TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.576272 %AT, 1870735 nt, 14554 terms. Intergenic: 0.645063 %AT, H2T: 203851 nt, 2206 terms; T2T: 98800 nt, 2296 terms; H2H: 85814 nt, 1373 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|165975457|ref|NC_010278.1| Actinobacillus pleuropneumoniae serovar 3 str. JL03, complete genome (length 2242062) dnaA 2 - 1486 + | chromosomal replication initiator protein TERM 1 1493 - 1475 - f 76 -6 -4.56093 | AACTTAACCAGAAAA TTATCGTC ATA GGCGATAA GGGATTATTATGCAA dnaN 1503 - 2606 + | DNA polymerase III subunit beta TERM 2 3415 - 3429 + G 81 -7.1 -4.67038 | CTATACCATGATTGG TCCGC AAAAG GCGGA TTTTCGTTTTCGGGC recF 2666 - 3748 + | recombination protein F TERM 3 3771 - 3753 - T 100 -13.2 -5.68438 | opp_overlap 3753 TGACTAAATAAAAAA GGGATGTG TTA CACATCCC TTTTTTCATCGGTTT TERM 4 3753 - 3771 + T 100 -13.2 -5.19261 | opp_overlap 3753 TGACTAAATAAAAAA GGGATGTG TTA CACATCCC TTTTTTCATCGGTTT sodC 4376 - 3804 - | superoxide dismutase Cu-Zn TERM 5 4015 - 4028 + g 76 -8.1 -4.09503 | opp_overlap 4014, overlap 4017 TGTGCGTTATCAGAC CACGG ATAA CCGTG TTGTTTGGTCTCTTT TERM 6 4253 - 4265 + g 77 -6.3 -4.62336 | opp_overlap 4245, overlap 4245 GATCAAGTTGTTGTA CTTGT ACG ACAAG TTTTTCCACTGCGCT TERM 7 5437 - 5417 - g 73 -2.6 -5.22943 | gap 1 ATTAAATTGAAAAAA GATCTACCG TTAG CGG-AAATC GAGCAAATTATTGCG TERM 8 5549 - 5529 - g 71 -8.2 -3.51708 | opp_overlap 5516, overlap 5516 5514 CACCGGCGAAAGTAA CCGGTACG TTAAG CGTTCCGG TCGGTCGTTTACGTA asd 4559 - 5671 + | aspartate-semialdehyde dehydrogenase TERM 9 5696 - 5734 + T 90 -11.1 -4.21438 | opp_overlap 5696 5693 ATTAGAGACTAACAA GCGGTCGGGTTTTGCAA AAAAA TTGCAAATTTTGACCGC TTATTTATTGCAATA TERM 10 5754 - 5772 + T 100 -14.6 -4.67697 | opp_overlap 5754 TTATTGCAATAAAAA GCCCAAGC AAT GCTTGGGC TTTGTTGTTTTCGGA TERM 11 5772 - 5754 - T 100 -14.6 -5.08601 | opp_overlap 5754 TTATTGCAATAAAAA GCCCAAGC AAT GCTTGGGC TTTGTTGTTTTCGGA ompP2A1 6088 - 5798 - | outer membrane protein P2 TERM 12 5960 - 5974 + g 86 -5.7 -5.4111 | ATAGTATTCGGTACC CACCA TAAAT TGGTG TTTTTTCTCGTTATT TERM 13 6050 - 6030 - G 78 -10.5 -3.29144 | CTATTGGTTTTATAA GCGTACATA CCG TATGCACGC CAATCATCGGTTAAA ompP2A2 6928 - 6113 - | outer membrane protein P2 TERM 14 7414 - 7404 - g 71 -3.2 -5.06816 | ACCGTCGAAGAAAAA CTCA AAG CGAG CGGAATTAAAGCTAT TERM 15 7494 - 7483 - g 70 -5.8 -4.37092 | opp_overlap 7482 ATCGTGTTCAGAAAA TCGC ACGT GCGA CTAATTTAGTGTTGG lpxB 7077 - 8258 + | lipid-A-disaccharide synthase TERM 16 9049 - 9032 - g 82 -4.9 -5.34381 | AAAGGCAAACAAAAA TTCCAAC AAGA ATTGGAA GAAACTCACCAATTA TERM 17 9126 - 9114 - g 100 -9.1 -5.1287 | opp_overlap 9112 TGGATATTGAAAAAA TCGCC ACC GGCGA GCATTGGTTCGGTAA sohB 8288 - 9343 + | putative periplasmic protease TERM 18 9356 - 9400 + F 100 -18.9 -5.89921 | opp_overlap 9359 9378, overlap 9359 TAATCGAGTGTTAAG CAAGCGGTTCGATTTTGTGAA ATT TTTGCAAAATCGAACCGCTTA TTTTTTTGTTATGAT TERM 19 9359 - 9397 + F 100 -20.6 -4.98468 | opp_overlap 9359 9378, overlap 9356 TCGAGTGTTAAGCAA GCGGTTCGATTTTGTGAA ATT TTTGCAAAATCGAACCGC TTATTTTTTTGTTAT TERM 20 9397 - 9359 - f 100 -16.2 -3.34895 | opp_overlap 9359 9356, overlap 9378 TCGAGTGTTAAGCAA GCGGTTCGATTTTGTGAA ATT TTTGCAAAATCGAACCGC TTATTTTTTTGTTAT mraZ 9578 - 10036 + | cell division protein MraZ mraW 10062 - 11003 + | S-adenosyl-methyltransferase MraW ftsL 11016 - 11330 + | cell division protein TERM 21 12423 - 12410 - g 70 -8.1 -3.63515 | opp_overlap 12418 GGTTATTGCCAATAA TGCCG AATC CGGCA CGGCGGTGTTGGTTG TERM 22 12463 - 12482 + G 76 -9.2 -3.53012 | CCGGCGAAATTTTGG CGATGGCG AATG CGCCTTCG TTTAACCCGAACAAA TERM 23 13262 - 13280 + G 72 -8 -3.81848 | CGGACAATACTACGG CGGTTCGG TTT CCGCGCCG TTATTCTCGAGTATT ftsI 11334 - 13394 + | penicillin-binding protein 3 murE 13418 - 14920 + | UDP-N-acetylmuramyl-tripeptide synthetase murF 15135 - 16529 + | UDP-MurNAc-pentapeptide synthetase mraY 16634 - 17716 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 24 17722 - 17738 + F 100 -9.4 -4.74103 | opp_overlap 17722 ACTTCGTTAATCATA GGTGGG CTTGT CCCACC TTTTTCGCTTGCAAG TERM 25 17738 - 17722 - f 73 -9.4 -2.90194 | opp_overlap 17722 ACTTCGTTAATCATA GGTGGG CTTGT CCCACC TTTTTCGCTTGCAAG TERM 26 18327 - 18315 - g 75 -9.1 -3.72893 | opp_overlap 18314 18311 CACTTCGTCATTAAA TGCGG TGG CCGCA ACTATTTTAAATATT murD 17800 - 19110 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase ftsW 19112 - 20290 + | cell division protein TERM 27 20300 - 20338 + F 100 -15.4 -4.89063 | opp_overlap 20300 AGTTAAGATCAACAA GCGGTCGGAATTTGCAAA AAA TTTGCAAAAACTGACCGC TTTCTTTTTCCGTAA TERM 28 20338 - 20300 - f 100 -13.2 -3.82486 | opp_overlap 20300 AGTTAAGATCAACAA GCGGTCGGAATTTGCAAA AAA TTTGCAAAAACTGACCGC TTTCTTTTTCCGTAA murG 20445 - 21500 + | N-acetylglucosaminyl transferase murC 21552 - 22979 + | UDP-N-acetylmuramate--L-alanine ligase ddlB 23087 - 23998 + | D-alanine--D-alanine ligase TERM 29 24170 - 24194 + G 81 -10.7 -3.37464 | opp_overlap 24170 ATAGTTGGTTGGAAA GTCTGGATCGG AAC CCGATTCGGGC TTATGCACTTACTCA ftsQ 24103 - 24792 + | cell division protein TERM 30 25098 - 25112 + G 80 -10 -3.60627 | opp_overlap 25098 CTGCGTTGAACGAAA GCGGTA CCG TACCGC TTTCAGGTACGGTAA TERM 31 25112 - 25098 - g 84 -10 -3.90112 | opp_overlap 25098 CTGCGTTGAACGAAA GCGGTA CCG TACCGC TTTCAGGTACGGTAA TERM 32 25950 - 25936 - g 74 -7.8 -3.97674 | opp_overlap 25948 GGATTACGTAAATAA GCCGCA ATA TGCGAC AGTACTCGGTCTTTT ftsA 24818 - 26092 + | cell division protein TERM 33 26477 - 26491 + G 78 -9.2 -3.64487 | GCGGCGGTACGGGTA CCGGTG CGG CGCCGG TTATTGCCGATATCG ftsZ 26131 - 27309 + | cell division protein FtsZ TERM 34 27461 - 27446 - g 95 -7.6 -5.04385 | CACAGCGGTAAAAAA GTAACG CTAA CGTTAC GTCCCGCACCGGCTA lpxC 27377 - 28297 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 35 28347 - 28322 - f 89 -10.5 -4.12902 | opp_overlap 28322 GAATTAGTTTGAAAA TCCTCGTTGAT GAAA ATCAGCGAGGA TTTTTTTATGGTAAG TERM 36 28322 - 28347 + F 100 -12.7 -5.67063 | opp_overlap 28322 GAATTAGTTTGAAAA TCCTCGTTGAT GAAA ATCAGCGAGGA TTTTTTTATGGTAAG TERM 37 28430 - 28442 + G 71 -4.9 -4.62904 | opp_overlap 28421 GTAATAGTATATATC TATAC AGG GTATA TTTTTACAGGTGTTT TERM 38 29682 - 29672 - g 73 -5.4 -4.68994 | AGCATGATGCAAAAA GCTT ATC AAGC AACGGGGCTGATGTT recN 28384 - 30132 + | DNA repair protein TERM 39 30227 - 30169 - T 79 -8.5 -4.17906 | opp_overlap 30170 30170, overlap 30170 AATTAAACGAAATAA GCGGTCGTTTTTTTAG-AGAACAACGCAA TTT TTGCAAAGTTTTCCTAAAAAAACGACCG- CTTGTTGTTATGATT TERM 40 30170 - 30227 + T 100 -14.5 -3.02882 | gap 1, opp_overlap 30169 30170, overlap 30170 ATTAAACGAAATAAG CGGTCGTTTTTTTA-GAGAACAACGCAA TTT TTGCAAAGTTTTCCTAAAAAAACGACCG CTTGTTGTTATGATT TERM 41 30170 - 30228 + T 79 -8.5 -4.06611 | gap 2, opp_overlap 30169 30170, overlap 30170 ATTAAACGAAATAAG -CGGTCGTTTTTTTA-GAGAACAACGCAA TTT TTGCAAAGTTTTCCTAAAAAAACGACCGC TTGTTGTTATGATTC TERM 42 30227 - 30170 - T 100 -14.5 -3.09117 | gap 1, opp_overlap 30170 30170, overlap 30169 ATTAAACGAAATAAG CGGTCGTTTTTTTAG-AGAACAACGCAA TTT TTGCAAAGTTTTCCTAAAAAAACGACCG CTTGTTGTTATGATT APJL_0027 31677 - 30274 - | peptide transport system ATP-binding protein TERM 43 31365 - 31355 - G 71 -4 -4.78029 | opp_overlap 31355 GCAACAAAAGTAAAA CTTT CCC AAAG CTGTTTACCTATCGT APJL_0028 32462 - 31677 - | nickel transport system permease protein gsiC 33412 - 32465 - | glutathione permease protein TERM 44 33480 - 33443 - R 95 -7 -5.38951 | opp_overlap 33443 AATTCATATAAAAAA CACGGAAAGCGGCTTA AATTTG TATGCTGTTTTCCGTG TTTTTAATGCTAAAT TERM 45 33443 - 33480 + r 100 -11.4 -4.77438 | opp_overlap 33443 AATTCATATAAAAAA CACGGAAAGCGGCTTA AATTTG TATGCTGTTTTCCGTG TTTTTAATGCTAAAT APJL_0030 35080 - 33506 - | ABC-type dipeptide transport system, periplasmic protein TERM 46 35168 - 35149 - R 80 -2.2 -5.77632 | AAAACCATAAAAAAA TAATAGCT ATTA ATCTATTA AATCAATAAAAAAAT TERM 47 35266 - 35216 - R 100 -19.4 -2.90904 | opp_overlap 35223, overlap 35223 GGAGAATTAGAAGGA TAAAAAAGCGGTCATTTTGTCGAA TTT CTCTACAAAATGACCGCTTGTTTA GCAAAGATTAATGTT TERM 48 35223 - 35259 + r 100 -16.8 -3.90922 | opp_overlap 35216 35223 TAGAAGGATAAAAAA GCGGTCATTTTGTCGA ATTTC TCTACAAAATGACCGC TTGTTTAGCAAAGAT TERM 49 35259 - 35223 - R 100 -17.5 -5.39755 | opp_overlap 35223, overlap 35216 TAGAAGGATAAAAAA GCGGTCATTTTGTCGAA TTT CTCTACAAAATGACCGC TTGTTTAGCAAAGAT prfC 36854 - 35274 - | peptide chain release factor 3 TERM 50 36693 - 36716 + g 70 -5.2 -4.54727 | CATTTCCATCCAGTC GGATTTGGCG TGTG CGCTAGAGCC TTTTCCTTTCACCGA APJL_0032 37037 - 37504 + | membrane protein TERM 51 37919 - 37929 + G 71 -6.8 -4.08216 | GGAGTATGCGCTTTA CGGT TCA ACCG TTTTCGGCGGCATCG APJL_0033 37551 - 38066 + | membrane protein TERM 52 38109 - 38078 - f 80 -10.2 -3.56862 | opp_overlap 38081, overlap 38068 38081 ATAAATTCGGCGAAA TCAGGGCATTTTCC TTGT GGAAAATGCCCTTT TTGCCTACAATAATA TERM 53 38081 - 38106 + F 100 -16.3 -4.66609 | opp_overlap 38081 38078 38068 AATTCGGCGAAATCA GGGCATTTTCC TTGT GGAAAATGCCC TTTTTGCCTACAATA TERM 54 38106 - 38081 - f 100 -16.3 -2.90992 | opp_overlap 38081, overlap 38078 38068 AATTCGGCGAAATCA GGGCATTTTCC TTGT GGAAAATGCCC TTTTTGCCTACAATA pth 38193 - 38777 + | peptidyl-tRNA hydrolase TERM 55 38810 - 38826 + F 82 -6.5 -5.07107 | opp_overlap 38809 38810 CAGAATTATGATAAG CGGTCAA ATT TAGACCG TTTTTTACCAATTTA TERM 56 39187 - 39175 - g 70 -7.7 -3.57615 | CCAATATTCGTGAAA CCGAT GCG ATCGG TCACGTAGTGCGTTG TERM 57 39410 - 39426 + G 73 -8.7 -3.54408 | GGTGCTTGAAAATGC CGGAATG ATT CGTTCCG TTGATTTAGATAAAG engD 38886 - 39977 + | translation-associated GTPase TERM 58 39999 - 40028 + F 100 -9.4 -5.00884 | opp_overlap 39998 AAAATAACCGAAATT TGACCGCTTGTG AAAGAG TACAAGCGGTTA TTTTTTAGGAGAAAT TERM 59 40231 - 40218 - g 78 -5.9 -4.78848 | opp_overlap 40198 TTTTTAAAGAGAAAA CGGCA TTTA CGCCG AGAGATCCGACTCAA TERM 60 40268 - 40256 - g 80 -6.3 -4.7923 | opp_overlap 40255 40256 ACTCAAACAAATAAA CTTGT GGT ACAAG GTATTTATCGCGTAA APJL_0036 40049 - 40486 + | putative protein-S-isoprenylcysteine methyltransferase TERM 61 40496 - 40521 + T 70 -9.1 -3.00704 | opp_overlap 40501, overlap 40501 CTGTGAGAAAGATAA AAAAACCTCGA TTGC TCGAGGTTTTG TATAATTTCAACCGT TERM 62 40501 - 40516 + T 90 -9 -4.6468 | opp_overlap 40501, overlap 40496 AGAAAGATAAAAAAA CCTCGA TTGC TCGAGG TTTTGTATAATTTCA TERM 63 40516 - 40501 - T 100 -9 -5.90231 | opp_overlap 40501 40496 AGAAAGATAAAAAAA CCTCGA TTGC TCGAGG TTTTGTATAATTTCA APJL_0037 40811 - 40536 - | hypothetical protein lpp 41306 - 40842 - | outer membrane lipoprotein APJL_0039 41929 - 41333 - | hypothetical protein TERM 64 42243 - 42233 - g 73 -8.2 -3.72588 | opp_overlap 42232 TAATGCAGATTTAAA CGGC ATT GCCG ATAAATTAGAAATTG argS 42108 - 43754 + | arginyl-tRNA synthetase TERM 65 44339 - 44322 - g 70 -2.5 -5.00616 | overlap 44302 CGCCTCGTCAAAAAA CGAACGG TACA CCGGGCG AAAAACGTGATTTAT APJL_0041 43898 - 45073 + | GTPase ObgE TERM 66 45127 - 45090 - f 82 -10.7 -3.52652 | opp_overlap 45090 CCTAGCTAATGACAA GCGGTTGAATTTGCGAA AAAA TTTACAAATTCGACCGC TTTTTATTTGAGGAA TERM 67 45090 - 45127 + F 100 -12.9 -5.27335 | opp_overlap 45090 CCTAGCTAATGACAA GCGGTTGAATTTGCGAA AAAA TTTACAAATTCGACCGC TTTTTATTTGAGGAA APJL_0042 45148 - 45759 + | hypothetical protein APJL_0043 46602 - 45859 - | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 68 46666 - 46627 - R 100 -8 -5.63517 | overlap 46629 TTTGTAAATAAAAAA GACGGATAACAAAGTTTT ATAC AAATCTATGTTATCCGTG ATAAATCAAATAATT TERM 69 46664 - 46629 - R 95 -10.6 -4.45696 | overlap 46627 TGTAAATAAAAAAGA CGGATAACAAAGTTTT ATAC AAATCTATGTTATCCG TGATAAATCAAATAA pssA 48045 - 46681 - | phosphatidylserine synthase TERM 70 47084 - 47074 - G 73 -8.2 -3.61232 | opp_overlap 47083, overlap 47072 47075 TTTCTCATATAAATA CGGC AAT GCCG ATGCCATCGTAAATT TERM 71 48177 - 48159 - R 100 -14.6 -4.27316 | opp_overlap 48159 CTTTGTAATGTAAAA CCTCGCAC ATT GTGCGAGG TTATGTTACTTAAGC TERM 72 48159 - 48177 + r 100 -14.6 -3.76048 | opp_overlap 48159 CTTTGTAATGTAAAA CCTCGCAC ATT GTGCGAGG TTATGTTACTTAAGC ileS 50965 - 48197 - | isoleucyl-tRNA synthetase TERM 73 50390 - 50408 + g 74 -9.6 -3.33214 | opp_overlap 50390 50388 50386, overlap 50388 GCGAACATAAATAGA CGGAGACA CTT TGTCTTCG TATTCTACTTCCGCT TERM 74 50984 - 50972 - R 80 -9.1 -3.84825 | opp_overlap 50965 50970 CCCACGCATAGGAAA GCCTG TTT CAGGC AAATTTAAAGTGTTT ribF 52036 - 51074 - | riboflavin biosynthesis protein TERM 75 51382 - 51399 + g 71 -9.1 -3.30338 | TTAGCATAATATTGG CGGTCGG AAAA CCGATCG TTCTCCCGAGCTTAT TERM 76 51632 - 51603 - G 75 -7.1 -4.36127 | overlap 51596 51606 CGTAACAAGGCAAAA TCACCGGTTCGGT TTGC ACCGAAGCGGAAA TCGTCGCCTACGCTT TERM 77 51629 - 51606 - G 79 -11 -3.15579 | overlap 51603 51596 AACAAGGCAAAATCA CCGGTTCGGT TTGC ACCGAAGCGG AAATCGTCGCCTACG nadR 52369 - 53649 + | nicotinamide-nucleotide adenylyltransferase TERM 78 53889 - 53875 - g 76 -7.8 -4.15006 | overlap 53863 ATAGCGAGTGGAAAA CGCGCA GTT TGCACG GCAAAGTCGTAGATA APJL_0048 53646 - 54344 + | diadenosine tetraphosphatase and related serine/threonine protein phosphatase TERM 79 54913 - 54899 - g 73 -3.5 -5.00027 | ATGAAAAAGAGAAAA CGACG AAAGA CATCG TACAGACGGACAGCT arcA 54517 - 55233 + | two-component response regulator APJL_0050 55285 - 55803 + | hypothetical protein TERM 80 55821 - 55865 + T 100 -18.1 -5.84381 | opp_overlap 55824, overlap 55824 ATTTTTCCCTTATGA CAAGCGGTCGTTTCTTGCAAA AAA TTTGCGAAAAACGACCGCTTA TTTTTTTATTAATAC TERM 81 55824 - 55862 + T 100 -19.8 -4.96435 | opp_overlap 55824, overlap 55821 TTTCCCTTATGACAA GCGGTCGTTTCTTGCAAA AAA TTTGCGAAAAACGACCGC TTATTTTTTTATTAA TERM 82 55862 - 55824 - T 100 -19.8 -3.40403 | opp_overlap 55824 55821 TTTCCCTTATGACAA GCGGTCGTTTCTTGCAAA AAA TTTGCGAAAAACGACCGC TTATTTTTTTATTAA APJL_0051 56422 - 55886 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase TERM 83 57004 - 56994 - g 79 -3.2 -5.27779 | overlap 56986 TTGAACAGCAAAAAA TCGC GTT ACGA AAAATGCAGCAACTT APJL_0052 56477 - 57172 + | hypothetical protein typA 57319 - 59211 + | GTP-binding protein TERM 84 59232 - 59261 + F 100 -7.2 -5.51165 | gap 1, opp_overlap 59232 59233, overlap 59233 ATTAGTTTAATGAAA TGCTCGC-TGCTA TTACC TAGCAAGCGGGCG TTTTTTTAGGGTTTT TERM 85 59233 - 59260 + F 77 -8.5 -3.88259 | gap 1, opp_overlap 59233 59232, overlap 59232 TTAGTTTAATGAAAT GCTCGC-TGCTA TTACC TAGCAAGCGGGC GTTTTTTTAGGGTTT grxA 59370 - 59633 + | glutaredoxin 1 TERM 86 59691 - 59657 - T 89 -5.9 -5.38054 | gap 1, opp_overlap 59657 CGTTAGAAACAAAAA CGGCACAAGT-ATTTA ATTT TAATTTACTTATGCCG TTTATTTTTATAAAG TERM 87 59657 - 59691 + T 72 -3.7 -4.96501 | gap 1, opp_overlap 59657 CGTTAGAAACAAAAA CGGCACAAGT-ATTTA ATTT TAATTTACTTATGCCG TTTATTTTTATAAAG rph 60415 - 59699 - | ribonuclease PH TERM 88 60345 - 60334 - G 73 -5.8 -4.45664 | CGAATTCAACTAAAA CGGA ACCT TCCG CATAACGAGTATAGT TERM 89 60695 - 60707 + G 71 -3.3 -5.0133 | TGTGGGAAATCCGCT CGGTG AAT CAACG TTTTTTAGAGACCTA TERM 90 60996 - 60982 - g 70 -7.2 -3.82202 | GATGCTCAAACACAA GATTTG GAT CAAATC GGGCAAGACCTGTTA TERM 91 61163 - 61148 - g 70 -7.6 -3.60074 | CACAAATGCCGGAAA TTCTGC AATG GCAGAA AGATAAATTACAACA APJL_0056 60619 - 61482 + | hypothetical protein APJL_0057 61491 - 62378 + | hypothetical protein TERM 92 62386 - 62409 + T 100 -11.1 -5.61824 | opp_overlap 62386 ACGCATAATAAAAAA CGGAGAATG AATAGC CATTCTCCG TTTTTTTACATTTTA TERM 93 62409 - 62386 - T 100 -11.8 -5.56673 | opp_overlap 62386 ACGCATAATAAAAAA CGGAGAATGA ATAG CCATTCTCCG TTTTTTTACATTTTA fdx1 62688 - 62428 - | ferredoxin-like protein TERM 94 62828 - 62783 - R 85 -11.4 -3.3344 | opp_overlap 62787, overlap 62787 AGTTAAGCGGTACAA GTAAGCGGTTAAATTTGCCA CTTTTT TAGTAAATTTAACCGCTTGC TGGGATTAACCCTTT TERM 95 62787 - 62824 + r 80 -10.8 -3.18681 | opp_overlap 62783 62787 AAGCGGTACAAGTAA GCGGTTAAATTTGCCA CTTTTT TAGTAAATTTAACCGC TTGCTGGGATTAACC TERM 96 62824 - 62787 - R 82 -10.8 -3.4489 | opp_overlap 62787, overlap 62783 AAGCGGTACAAGTAA GCGGTTAAATTTGCCA CTTTTT TAGTAAATTTAACCGC TTGCTGGGATTAACC narP 63463 - 62834 - | nitrate/nitrite response regulator protein TERM 97 63536 - 63520 - H 72 -9.5 -2.73701 | opp_overlap 63523, overlap 63519 TCTCACTAAAGCAAG TTACCCA TTT TGGGTAA TTCAACTAATTTTTG TERM 98 64509 - 64497 - g 71 -4.8 -4.69622 | ACAGAATGCGAAAAA TGCC GGTGT GGCA CATTTAATTCAATGG TERM 99 65063 - 65037 - g 73 -5.1 -4.65895 | TGCCGCACCGAAAAA CATCGACGAAC AAAAA GCTCGCCAACG CTTACTGGATGCCGT APJL_0060 63667 - 65805 + | 23S rRNA m(2)G2445 methyltransferase TERM 100 65841 - 65812 - f 85 -12.3 -3.0274 | opp_overlap 65810, overlap 65809 65806 GAAAATTAACAATCA CGGAATACACGAA AAGT TTTGTGTATTCCG CCTATTGGATGGTAA APJL_0061 65863 - 66342 + | tRNA/rRNA methyltransferase TERM 101 66458 - 66439 - T 100 -12.2 -5.67967 | opp_overlap 66439 AGTAGCATAAAAAAA TCCCAAGC CTCA GCTTGGGA TTTTTGTTTCAATAA TERM 102 66439 - 66458 + T 100 -12.2 -5.30616 | opp_overlap 66439 AGTAGCATAAAAAAA TCCCAAGC CTCA GCTTGGGA TTTTTGTTTCAATAA mipB 67429 - 66482 - | transaldolase B TERM 103 67688 - 67733 + H 81 -2.6 -5.72254 | gap 1, overlap 67691 ATAATGCATCCCACA CAACGACGCACTGTTGTGAAC GAGAA GTAAATG-CAGTGCGTCGTTC TTTTTTGTTCTTTAA TERM 104 67691 - 67730 + H 71 -4.3 -4.86954 | gap 1, overlap 67688 ATGCATCCCACACAA CGACGCACTGTTGTGAAC GAGAA GTAAATG-CAGTGCGTCG TTCTTTTTTGTTCTT TERM 105 69434 - 69451 + H 70 -9.1 -3.07291 | opp_overlap 69434 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT TERM 106 69539 - 69527 - H 82 -7.7 -4.52347 | GAAAGAAGACGAAAA CGGAT ATA ATCCG GCATCCTTTTGGGTC TERM 107 71312 - 71298 - H 73 -5.7 -4.58213 | TAAGTAACGATAAAA CGAGT GAAAA ACTCG TTCGCCGGAAGACCA TERM 108 73016 - 72990 - H 76 -2.2 -5.57729 | AAAGAAGACAAAAAA CGAAAAAATCAG TGA CGGCTTGTTTCG AATTTAAGAAGAAAA TERM 109 73264 - 73224 - H 81 -9.2 -3.73399 | gap 1, opp_overlap 73224 73232, overlap 73232 GAAAGCGAAAACGAA GCAAGAAACCCTGTGGTTA GCGA TAACTACGGGGTTT-TTGC TTTTTTACAACAGAC TERM 110 73224 - 73264 + H 100 -13.6 -5.00616 | gap 1, opp_overlap 73224 73232, overlap 73232 GAAAGCGAAAACGAA GCAAGAAACCCTGTGGTTA GCGA TAACTACGGGGTTT-TTGC TTTTTTACAACAGAC TERM 111 73232 - 73257 + H 100 -10.5 -5.25735 | opp_overlap 73232 73224, overlap 73224 AAACGAAGCAAGAAA CCCTGTGGTTA GCGA TAACTACGGGG TTTTTGCTTTTTTAC TERM 112 73257 - 73232 - H 73 -6.1 -4.37247 | opp_overlap 73224 73232, overlap 73224 AAACGAAGCAAGAAA CCCTGTGGTTA GCGA TAACTACGGGG TTTTTGCTTTTTTAC dppA1 73587 - 75182 + | dipeptide transport protein TERM 113 75254 - 75205 - f 100 -19.7 -4.05193 | opp_overlap 75205 TAGTAAATACAATAA GCGGTCTAAATTTCGCGAAAATT TGCA AATTTTCGTTAAATTTAGACCGC TTTTGATTGAAAAAG TERM 114 75205 - 75254 + F 100 -21.9 -4.4078 | opp_overlap 75205 TAGTAAATACAATAA GCGGTCTAAATTTCGCGAAAATT TGCA AATTTTCGTTAAATTTAGACCGC TTTTGATTGAAAAAG dppA2 75349 - 76950 + | dipeptide transport protein dppB 77076 - 78080 + | dipeptide transport system permease protein TERM 115 78968 - 78980 + G 70 -7.7 -3.7014 | overlap 78931 78978 ACCATTCCGGGGCTT GCGAT TTT ATCGC TTGTATTAGCGTTTA dppC 78158 - 79048 + | dipeptide transport system permease protein dppD 79059 - 80045 + | dipeptide transporter ATP-binding subunit TERM 116 80105 - 80087 - g 73 -3.8 -4.95211 | overlap 80082 AAAAAACGAACAAAA CGCACC GCTTCTT GATGCG AAAAATCTGAAAAAA dppF 80058 - 81047 + | dipeptide transporter ATP-binding subunit TERM 117 81064 - 81108 + T 100 -18.1 -5.95946 | opp_overlap 81067 TAGTCTTAAGATAGC CAAGCGGTCGTTTCTTGCAAA AAA TTTGCGAAAAACAACCGCTTG TTTTTTTATTATTAG TERM 118 81105 - 81067 - T 100 -16.2 -3.19175 | opp_overlap 81064 TCTTAAGATAGCCAA GCGGTCGTTTCTTGCAAA AAA TTTGCGAAAAACAACCGC TTGTTTTTTTATTAT psiE1 81530 - 81120 - | phosphate-starvation-inducible protein PsiE APJL_0070 82240 - 81608 - | hypothetical protein APJL_0071 82639 - 82295 - | hypothetical protein TERM 119 82709 - 82665 - R 100 -16 -4.87133 | opp_overlap 82668 82677 ATGTTTGAAAGAAAA CAAGCGGTAGAAATTTGCAA AAAAA TTGCAAAATTTTACCGCTTG CATAGCTTAAATCGG TERM 120 82668 - 82706 + r 100 -14.1 -3.10112 | opp_overlap 82665, overlap 82677 TTTGAAAGAAAACAA GCGGTAGAAATTTGCAA AAAAA TTGCAAAATTTTACCGC TTGCATAGCTTAAAT ilvE 83763 - 82726 - | branched-chain amino acid aminotransferase TERM 121 83150 - 83169 + g 70 -9.3 -2.78547 | opp_overlap 83141 83144, overlap 83133 83141 83148 GCAAATTTACGGGTT GCCGTAC CTTGTT GTACGGC TAATTCGTGCGGTAA TERM 122 83477 - 83511 + g 72 -9.3 -3.1319 | gap 1 ACAAATAATTCGGTC GGCACTTC-CGCCATT AATA AACGGCGAGCAGTGCC TTGCATACGTTTTGC TERM 123 83887 - 83867 - R 100 -12.6 -5.60993 | opp_overlap 83864 83863, overlap 83846 83845 TTTTCGATAAAAAAA GCCCAAGC GAATT GCTTGGGC TAACTGTTTGTAAAA APJL_0073 84238 - 83906 - | glutaredoxin-like protein recR 84975 - 84310 - | recombination protein RecR TERM 124 84977 - 84943 - G 75 -8.8 -3.68767 | gap 1, opp_overlap 84946, overlap 84946 ATAGTTGAAAATTAA TAATGGATAG-CCGC AATAAA GCGAACTATCCATTA TCGCTAAATTAGAAT APJL_0075 85315 - 84986 - | hypothetical protein TERM 125 85373 - 85389 + r 76 -8 -4.03183 | TTTTACTTAAGCACT CCGCTT TAGGC AAGCGG TTATCTTTTGTCGAT TERM 126 85473 - 85452 - R 100 -13.1 -4.8622 | opp_overlap 85455 TGGCTTAAGTAAAAA TAAGCTCCC TTAC GGGAGCTTA TTGACAAGATTTATT TERM 127 85455 - 85470 + r 82 -10.4 -3.6279 | opp_overlap 85452 CTTAAGTAAAAATAA GCTCCC TTAC GGGAGC TTATTGACAAGATTT tonB2 86218 - 85484 - | TobB energy transducing protein TERM 128 86137 - 86155 + g 80 -11.6 -2.68545 | overlap 86136 86140 CGACTTCGACTTTCT CCGGCTCC GGC GGTGCCGG CTCTTCTTGTGCGAC exbD2 86740 - 86351 - | biopolymer transport protein exbB2 87228 - 86785 - | biopolymer transport protein pspE 87425 - 87751 + | rhodanese-related sulfur transferase APJL_0080 87795 - 88640 + | thioredoxin-like protein TERM 129 88685 - 88660 - T 100 -11.2 -5.27477 | opp_overlap 88660 ATTTGAAGCAAAAAA TGAGGCGGAA GAGTTA CTCCGCCTCA TTTTTTATTGGGTAA TERM 130 88660 - 88685 + T 100 -10.5 -5.4833 | opp_overlap 88660 ATTTGAAGCAAAAAA TGAGGCGGA AGAGTTAC TCCGCCTCA TTTTTTATTGGGTAA dhaM 89121 - 88714 - | PTS-dependent dihydroxyacetone kinase,phosphotransferase subunit dAK1 89756 - 89130 - | dihydroxyacetone kinase ADP-binding subunit dhaK 90828 - 89758 - | dihydroxyacetone kinase subunit DhaK trxB 90998 - 91951 + | thioredoxin reductase TERM 131 92026 - 92036 + F 73 -6.8 -4.25873 | opp_overlap 92025 CCATGTTGATTTAAG CGGA TGT TCCG TGTTTTTTATAAAGG TERM 132 92245 - 92229 - g 76 -10.9 -2.63164 | overlap 92224 92228 GGAGATTGAAGCAAC CGCCAAA GCG TTTGGCG CGGAAGTGTGCATGA kdsB 92059 - 92811 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 133 92867 - 92824 - f 95 -12.6 -3.56099 | opp_overlap 92823 92827, overlap 92827 92837 TAGAATCGGCGGAAA CAAGCGGTCAAAATTGCAAA AAAC TTTGCAAATCGGACCGCTTA ATTATCTAGGCTGAG TERM 134 92864 - 92827 - f 93 -12.1 -3.91488 | opp_overlap 92823 92827, overlap 92824 92837 AATCGGCGGAAACAA GCGGTCAAAATTGCAAA AAAC TTTGCAAATCGGACCGC TTAATTATCTAGGCT TERM 135 92827 - 92864 + F 80 -9.9 -3.49886 | opp_overlap 92827 92824 92837, overlap 92823 AATCGGCGGAAACAA GCGGTCAAAATTGCAAA AAAC TTTGCAAATCGGACCGC TTAATTATCTAGGCT TERM 136 92854 - 92837 - f 73 -7.1 -4.12599 | opp_overlap 92827 92823, overlap 92827 92824 AACAAGCGGTCAAAA TTGCAAA AAAC TTTGCAA ATCGGACCGCTTAAT TERM 137 92917 - 92904 - f 81 -4.5 -5.33405 | opp_overlap 92904 92905, overlap 92905 CTCAGTAAATAAAAA CGTGC TTAG GCACA TTTCTCGGAGTAAAC TERM 138 93144 - 93126 - g 86 -8 -4.71426 | overlap 93128 93130 TGCGGATGAAGAAAA CGCACCGG TAT CCGGCGAG CAAATCGCAAATGTA APJL_0086 92935 - 93360 + | hypothetical protein TERM 139 93393 - 93371 - T 100 -15 -5.27779 | opp_overlap 93371 GTTAATATTAAAAAA CAGGGAGAAT TTA ATTCTCCCTG TTTTTGTTTTGGCTT TERM 140 93371 - 93393 + T 100 -15 -5.49568 | opp_overlap 93371 GTTAATATTAAAAAA CAGGGAGAAT TTA ATTCTCCCTG TTTTTGTTTTGGCTT nudC 94203 - 93433 - | NADH pyrophosphatase rluB 94916 - 94221 - | pseudouridylate synthase TERM 141 94411 - 94432 + g 73 -3.7 -4.93365 | overlap 94412 94415 TCGTGGATTTTTAGC TCAATCCAA CTAG TTGGAATGG TTTTTCGTTCTCGAA TERM 142 94501 - 94520 + g 72 -7.8 -3.75153 | overlap 94503 ATCGCTTTCGCTTTT GCCGGCTT GGTT AAGCCGTC TTTCAATTCAACACC TERM 143 94503 - 94518 + g 73 -9 -3.46068 | overlap 94501 CGCTTTCGCTTTTGC CGGCTT GGTT AAGCCG TCTTTCAATTCAACA TERM 144 94569 - 94555 - G 80 -10 -3.68619 | opp_overlap 94554 TCTAACTTAGCTAAA TCCGCA GCT TGCGGA ATACCTTCCACCTGT TERM 145 94866 - 94883 + g 76 -2.7 -5.25976 | TTGCAAGTTCGGTTT GTTTGTT GCGG AACGAGC TTTATTTTTTTGATT APJL_0089 95738 - 94920 - | hypothetical protein APJL_0090 96232 - 95768 - | hypothetical protein APJL_0091 97637 - 96255 - | proline dipeptidase TERM 146 96934 - 96969 + g 70 -7.8 -3.66874 | gap 1, opp_overlap 96955 96956 TGTAAAATAGCCGAA TGTTGATTTATGGCAAT AAT ATTGCCATAAGGC-ACA TTTAAATCGGATTGC sirA 97673 - 97849 + | SirA protein TERM 147 97853 - 97841 - T 70 -3.3 -5.0133 | TATTGGGTCAAAAAA GGGCT TTA AGCAC AATAAAATAATCCCC TERM 148 97894 - 97856 - T 100 -13.5 -3.50853 | gap 1, opp_overlap 97864, overlap 97861 97864 GGGCTTTAAGCACAA TAAAATAATCCCCCACAC AAAT GTATGGGGGATT-TTTTA ACTATTAGTGACGTG TERM 149 97890 - 97861 - T 100 -11.5 -4.84492 | opp_overlap 97864, overlap 97856 97864 TTAAGCACAATAAAA TAATCCCCCACAC AAAT GTATGGGGGATTT TTTAACTATTAGTGA TERM 150 97887 - 97864 - T 100 -13.2 -4.5028 | opp_overlap 97864, overlap 97861 97856 AGCACAATAAAATAA TCCCCCACAC AAAT GTATGGGGGA TTTTTTAACTATTAG TERM 151 97864 - 97887 + T 100 -11 -5.1615 | opp_overlap 97864 97861 97856 AGCACAATAAAATAA TCCCCCACAC AAAT GTATGGGGGA TTTTTTAACTATTAG APJL_0093 98339 - 97899 - | hypothetical protein engB 98961 - 98341 - | GTPase EngB TERM 152 99038 - 99028 - R 70 -5.4 -4.41348 | GCGTTGCTAAAGAAA GTCT ATT AGAC AGTCTGGATTCCCTT TERM 153 99177 - 99218 + r 70 -9 -3.07455 | overlap 99180 TAGGGTTGCCTTTCT TTTGGTTACTTTTCTTTG GCAACG CAAAGAAAATTAACCTAA TATGATTTATAGTGC TERM 154 99180 - 99215 + r 76 -10.7 -2.74598 | overlap 99177 GGTTGCCTTTCTTTT GGTTACTTTTCTTTG GCAACG CAAAGAAAATTAACC TAATATGATTTATAG APJL_0095 99659 - 99243 - | hypothetical protein gufA 100527 - 99697 - | GufA-like protein TERM 155 100302 - 100259 - G 87 -5 -5.45652 | opp_overlap 100298, overlap 100260 100274 100299 ATCCGTAAGAAAAAA CCGCCGGCAAGGAAACCGAC CGCA GCCGGTAGCCACGCAAGCGA ACCGTAACTCGGTTC TERM 156 100590 - 100607 + r 79 -7.1 -4.37658 | opp_overlap 100570 AATTTGCTCGAATTT TTGCAAA TTAT TTTGCAA TTTTCTAGCGAAATT ilvD 102513 - 100678 - | dihydroxy-acid dehydratase ilvM 102849 - 102631 - | acetolactate synthase 2 regulatory subunit ilvG 104519 - 102867 - | acetohydroxy acid synthase II large subunit TERM 157 103503 - 103514 + g 70 -5.8 -4.28254 | opp_overlap 103502 TTGGAAATCCAAATC CGCT TTTA AGCG TTTTACGTCTTCACG TERM 158 104962 - 104938 - g 85 -7.1 -4.86621 | opp_overlap 104940, overlap 104942 ACGTTTAACTAAAAA CCTAGCAATGG CAA CCATTGCAATG TTGGGATGTTTATCA TERM 159 104958 - 104942 - g 77 -10.9 -2.88788 | opp_overlap 104940, overlap 104938 TTAACTAAAAACCTA GCAATGG CAA CCATTGC AATGTTGGGATGTTT nrfA 104918 - 106426 + | cytochrome c nitrite reductase TERM 160 106489 - 106468 - g 88 -10.1 -4.16681 | opp_overlap 106477 106482, overlap 106471 AACATTATCTCAAAA GCAGGGCGA GCAA TCGCCCTCC AAGCGGTCGCTTTTG TERM 161 106486 - 106471 - g 77 -10.4 -3.10098 | opp_overlap 106477 106482, overlap 106468 ATTATCTCAAAAGCA GGGCGA GCAA TCGCCC TCCAAGCGGTCGCTT TERM 162 106502 - 106519 + G 71 -8.5 -3.54424 | TCCAAGCGGTCGCTT TTGCAAG TTTT CTTGCAA TTTCAACCGCTAGCC nrfB 106447 - 107094 + | cytochrome c-type protein NrfB TERM 163 107218 - 107206 - g 88 -3.3 -5.86465 | overlap 107207 AAGAAGAGAAAAAAA TTCGC TAT GCGAT GGTGCACGATGAAAC TERM 164 107217 - 107207 - g 71 -6.8 -4.08219 | overlap 107206 AGAAGAGAAAAAAAT TCGC TAT GCGA TGGTGCACGATGAAA TERM 165 107509 - 107521 + G 82 -7.7 -4.42386 | overlap 107507 GTATCGCAGTTTGCC CGTAC CGT GTACG TTTTATCCATCCGGA nrfC 107094 - 107771 + | nitrate reductase, Fe-S protein TERM 166 107925 - 107914 - g 71 -2.2 -5.15117 | overlap 107916 107917 CAAAATTGCAAAAAA CAGC GATA ACTG GGTTATCCGTAGTGC TERM 167 108520 - 108535 + G 71 -9 -3.34233 | opp_overlap 108532 108533, overlap 108533 CGCAGATAAACAGTT GGCGTT ACAA AACGCC TTGTCAGGCTTCTGG nrfD 107771 - 108739 + | nitrate reductase, transmembrane protein TERM 168 108754 - 108811 + T 100 -15.4 -5.10767 | opp_overlap 108762, overlap 108762 GTTCTAATATCTTTT TAATAAAATCCGCATTTAAAATCAAA GTTAGG TTTGATTTTGAGTGCGGATTTTTTTG TTTTTATATTGAGTA TERM 169 108762 - 108803 + T 100 -14.8 -6.23317 | opp_overlap 108762, overlap 108754 ATCTTTTTAATAAAA TCCGCATTTAAAATCAAA GTTAGG TTTGATTTTGAGTGCGGA TTTTTTTGTTTTTAT TERM 170 108803 - 108762 - T 95 -10.4 -4.63486 | opp_overlap 108754 108762 ATCTTTTTAATAAAA TCCGCATTTAAAATCAAA GTTAGG TTTGATTTTGAGTGCGGA TTTTTTTGTTTTTAT TERM 171 115759 - 115745 - T 74 -4.2 -4.90778 | CTGATGCAAATAAAA CGGTAA GTC TAACCG AAACCGGCTTAAATA TERM 172 115932 - 115902 - T 72 -7.5 -3.7282 | overlap 115909 TGATGGTACGAATAA CACAGCAGTACCG GATAG CGGTACGGTTGCG GTAAAAGGTTCAGCG TERM 173 116294 - 116284 - T 73 -6.8 -4.32048 | opp_overlap 116284 116282, overlap 116285 CAAGAACAGTTAAAA TCCG TTT CGGA TGTTGTGCAAAACGG TERM 174 117511 - 117493 - T 71 -4.4 -4.7254 | ATCGTTTACGAAAAA CCGAACGG TGG CGGTACGG AAGAAATCGCAACGC TERM 175 121165 - 121200 + T 76 -10.6 -2.7224 | opp_overlap 121173, overlap 121173 TAACCTATAATTGAA TGAATAAATGCGACCT TTCG GGGTCGCATTTTTTTA TGATATGTAATCTAA TERM 176 121173 - 121192 + T 100 -10 -5.69473 | opp_overlap 121173, overlap 121165 AATTGAATGAATAAA TGCGACCT TTCG GGGTCGCA TTTTTTTATGATATG TERM 177 121192 - 121173 - T 86 -9.3 -4.34223 | opp_overlap 121173 121165 AATTGAATGAATAAA TGCGACC TTTCGG GGTCGCA TTTTTTTATGATATG TERM 178 121364 - 121308 - T 100 -11.2 -5.85178 | opp_overlap 121308 121329 AATATTTAAAAAAAA GCGGTCGAATTTC-CTAAATCTTTTGCA ATT TGCAAGTT-TTTAGTGAAATTCGACCGC TTGTTTTAGAATAGA TERM 179 121308 - 121364 + T 100 -13.4 -4.19746 | opp_overlap 121308, overlap 121329 AATATTTAAAAAAAA GCGGTCGAATTTC-CTAAATCTTTTGCA ATT TGCAAGTT-TTTAGTGAAATTCGACCGC TTGTTTTAGAATAGA TERM 180 121329 - 121343 + T 74 -5 -4.74801 | opp_overlap 121308, overlap 121308 GAATTTCCTAAATCT TTTGCA ATT TGCAAG TTTTTAGTGAAATTC uraA 122620 - 121391 - | uracil permease TERM 181 122752 - 122728 - R 100 -7.9 -5.60556 | AACAGAAAATAAAAA TCCCCTCAG TTTATGG CTAAGGGGA TAAATATTAAGCTGA putA 126384 - 122779 - | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 182 124873 - 124887 + g 70 -5.6 -4.2558 | opp_overlap 124883 CGGGTGCATGGTGCC GGCGGT AAT ACCGGC TTTTGCTACCGGATC TERM 183 126047 - 126059 + g 100 -9.1 -4.82128 | overlap 126036 ATATGTGATTTCCAG TCGCC TTT GGCGA TTTTGTCTTTAATCA TERM 184 126479 - 126454 - R 100 -15.5 -5.79595 | opp_overlap 126454 TTCGAAAACAAAAAA GCGACTTGCCG TTGC CGGCAAATCGC TTTGTCTTTATTGAA TERM 185 126454 - 126479 + r 100 -13.3 -4.46072 | opp_overlap 126454 TTCGAAAACAAAAAA GCGACTTGCCG TTGC CGGCAAATCGC TTTGTCTTTATTGAA putP 128001 - 126487 - | sodium/proline symporter, proline permease TERM 186 128504 - 128476 - R 74 -4.7 -4.85782 | overlap 128485 128488 TTTTTCAAAAAGAAA TCCACAAAG TTATCCACAGG CTTTGTGGA TAGAAAAAACACCTG APJL_0109 129361 - 128576 - | putative HTH-type transcriptional regulator APJL_0110 129933 - 129358 - | hypothetical protein APJL_0111 130524 - 130204 - | hypothetical protein APJL_0112 130602 - 131153 + | hypothetical protein TERM 187 131450 - 131475 + G 70 -3.9 -4.78237 | gap 1, overlap 131442 131451 131470 GACGTTACAGCCGCT ACGCCGCTATGC ATT GGAT-GCGGCGA TTTTATTCTCCGATA hemE 131259 - 132323 + | uroporphyrinogen-III decarboxylase APJL_0114 132437 - 133027 + | hypothetical protein hupA 133163 - 133435 + | DNA-binding protein HU TERM 188 133456 - 133474 + T 100 -8.9 -5.7827 | opp_overlap 133456 TGCAAAGTTTTTAAA GCCTAGA TTCAT TCTAGGC TTTTTTGTTTCTCTT TERM 189 133474 - 133456 - T 75 -8.9 -3.5936 | opp_overlap 133456 TGCAAAGTTTTTAAA GCCTAGA TTCAT TCTAGGC TTTTTTGTTTCTCTT thyA 134339 - 133488 - | thymidylate synthase TERM 190 134469 - 134482 + G 70 -8.1 -3.65046 | GTCTGCTTAACCTTG GCGGT TCTG ACCGC TTGTTCGAGTAAAAG APJL_0117 134427 - 135011 + | hypothetical protein TERM 191 135317 - 135303 - g 75 -7.1 -4.2558 | TACTTTCGATTAAAA CCGGA GGATG TCCGG AAGAATGCGAATATT bioB 135107 - 136117 + | biotin synthetase TERM 192 136151 - 136136 - T 100 -10.4 -5.32565 | opp_overlap 136136 GAAGGAATGAAAAAA GCCAGC ATTT GCTGGC TTTTAGATTCTTTAT TERM 193 136136 - 136151 + T 95 -10.4 -4.40311 | opp_overlap 136136 GAAGGAATGAAAAAA GCCAGC ATTT GCTGGC TTTTAGATTCTTTAT cspC 136390 - 136181 - | cold shock-like protein proQ 136753 - 137301 + | putative solute/DNA competence effector prc 137393 - 139405 + | carboxy-terminal protease TERM 194 139434 - 139455 + F 75 -7.3 -4.33854 | GTATTAAATTAGCTG CCGCTTAAT GAAA GTTAGGCGG TTTGCTTTTATTGAT TERM 195 140272 - 140262 - g 82 -2.4 -5.67711 | CAAAGAAAACAAAAA CGCC TGA GCCG GCAACGGCAACCGGT APJL_0122 139502 - 141067 + | hypothetical protein TERM 196 141080 - 141118 + F 81 -5.4 -5.15969 | opp_overlap 141084 141085, overlap 141084 141085 TAATTCACAAATATA AAAATTTCCGAGAAGT TTTACTT GCTTCTCGGAACTTTC TTTTTTAGATTAAAC TERM 197 141084 - 141114 + F 83 -6.2 -5.08015 | opp_overlap 141084 141085, overlap 141080 141085 TCACAAATATAAAAA TTTCCGAGAAGT TTTACTT GCTTCTCGGAAC TTTCTTTTTTAGATT TERM 198 141114 - 141084 - f 81 -5.5 -5.24799 | opp_overlap 141080 141084 141085, overlap 141085 TCACAAATATAAAAA TTTCCGAGAAG TTTTACTTG CTTCTCGGAAC TTTCTTTTTTAGATT TERM 199 141113 - 141085 - f 78 -9 -3.73253 | opp_overlap 141085 141084 141080, overlap 141084 CACAAATATAAAAAT TTCCGAGAAG TTTTACTTG CTTCTCGGAA CTTTCTTTTTTAGAT TERM 200 141085 - 141113 + F 80 -9.7 -3.62369 | opp_overlap 141084 141085, overlap 141084 141080 CACAAATATAAAAAT TTCCGAGAAGT TTTACTT GCTTCTCGGAA CTTTCTTTTTTAGAT TERM 201 141140 - 141159 + F 91 -9.4 -4.59342 | opp_overlap 141138 AGATTAAACCTAATG GGCTTATT ACTT AATAAGCC TTTATTTATGGTCGA TERM 202 141168 - 141212 + F 71 -8.9 -3.21218 | ATAAGCCTTTATTTA TGGTCGATAGTAAATAATTTG TGA TAAATCATTTACTATCAATCA TTACTCGTGAAGAAT APJL_0123 141239 - 141793 + | hypothetical protein TERM 203 142259 - 142247 - g 75 -3.3 -5.08255 | opp_overlap 142230 142229 142247, overlap 142248 ATTTTGAAAACAAAA TCGCT TTT AGCGG CGATGTGTTATTTAA APJL_0124 141811 - 142440 + | glyoxalase II family protein APJL_0125 143192 - 142443 - | hypothetical protein TERM 204 142474 - 142520 + g 100 -14.8 -3.81027 | opp_overlap 142487, overlap 142480 142481 142487 GTAAACCATAATTGA TTTAACTGATAAATGGCAGAAT GAT ATTCTGCCATTTTTCGTTTAAA TTTCCCTTCATTGAA TERM 205 142480 - 142514 + g 100 -13.8 -3.8698 | opp_overlap 142487, overlap 142474 142481 142487 CATAATTGATTTAAC TGATAAATGGCAGAAT GAT ATTCTGCCATTTTTCG TTTAAATTTCCCTTC TERM 206 142481 - 142513 + g 100 -15.1 -2.91465 | opp_overlap 142487, overlap 142480 142474 142487 ATAATTGATTTAACT GATAAATGGCAGAAT GAT ATTCTGCCATTTTTC GTTTAAATTTCCCTT TERM 207 142487 - 142507 + g 100 -12.7 -5.01042 | opp_overlap 142487, overlap 142481 142480 142474 GATTTAACTGATAAA TGGCAGAAT GAT ATTCTGCCA TTTTTCGTTTAAATT TERM 208 142507 - 142487 - G 100 -12.7 -3.98083 | opp_overlap 142481 142480 142474 142487 GATTTAACTGATAAA TGGCAGAAT GAT ATTCTGCCA TTTTTCGTTTAAATT TERM 209 142825 - 142809 - G 70 -3.7 -4.82901 | opp_overlap 142817 TTTTTGCCATAAAAA TTGACAA CGC TTGGCAA GATCGAGCTTTGGTA TERM 210 143103 - 143082 - G 100 -10.9 -4.64861 | gap 1, opp_overlap 143081, overlap 143084 TTGGCGTAAAACAAA TC-GCTCGCC GGA GGCGAGCTGA ATCTGTTGGCTGCAA TERM 211 143100 - 143084 - G 93 -13.7 -2.62579 | opp_overlap 143081, overlap 143082 GGCGTAAAACAAATC GCTCGCC GGA GGCGAGC TGAATCTGTTGGCTG APJL_0126 143563 - 143189 - | periplasmic lipoprotein APJL_0127 143930 - 143565 - | HIT-like protein TERM 212 143977 - 143999 + r 70 -6.4 -4.14392 | opp_overlap 143988 TAATAATTCTCTAAT TTTTTGGCAA ATT TTGCAAAAAA TTTTACCGCTTGCGC yfeD 144832 - 144002 - | iron (chelated) transport system membrane protein yfeC 145679 - 144825 - | iron (chelated) transport system membrane protein rnhB 146273 - 145680 - | ribonuclease HII TERM 213 145739 - 145729 - G 77 -8.2 -4.07568 | opp_overlap 145703 145718 CTCTTTCGGTGAAAA GGGG TTG CCCC GAATTGTTCCAGTTT APJL_0131 147330 - 146296 - | ribosome-associated GTPase TERM 214 147540 - 147556 + H 87 -12.3 -3.28712 | opp_overlap 147540 147554 TCTAAACGAAAAAAA CCGTCCA AAA TGGACGG TTATAAACCAAAAAG TERM 215 147556 - 147540 - H 100 -12.3 -5.72207 | opp_overlap 147540, overlap 147554 TCTAAACGAAAAAAA CCGTCCA AAA TGGACGG TTATAAACCAAAAAG gcvA 147840 - 148730 + | DNA-binding transcriptional activator GcvA APJL_0133 148730 - 149410 + | nucleotidase TERM 216 149625 - 149606 - g 71 -2 -5.24129 | opp_overlap 149608 149609, overlap 149608 CGGCGGGAGAAAAAA TTGTCGCG ATTG CGCGCGAA TTACTGGTAAAAGCG cysB 149410 - 150393 + | transcriptional regulator CysB TERM 217 150448 - 150467 + G 79 -7.8 -4.35116 | ATTTTTGCATTAATT TCAACCGC TTGG GCGGATGA TTTTAATATAAAATA APJL_0135 150394 - 151038 + | hypothetical protein TERM 218 151104 - 151055 - T 100 -18.9 -4.84359 | opp_overlap 151057 151060, overlap 151057 151096 151097 CGACGGTTACAAAAA GACAAGCGGTCTATTTTTCGCAA TTTT TTGCAAGAAATAGACCGCTTGTT TATAAGCGAAAACTA TERM 219 151102 - 151057 - T 100 -21.5 -4.04397 | opp_overlap 151057 151060, overlap 151055 151096 151097 ACGGTTACAAAAAGA CAAGCGGTCTATTTTTCGCAA TTTT TTGCAAGAAATAGACCGCTTG TTTATAAGCGAAAAC TERM 220 151057 - 151102 + T 100 -21.5 -3.85698 | opp_overlap 151057 151055 151096 151097, overlap 151060 ACGGTTACAAAAAGA CAAGCGGTCTATTTTTCGCAA TTTT TTGCAAGAAATAGACCGCTTG TTTATAAGCGAAAAC TERM 221 151060 - 151099 + T 100 -17.4 -4.06419 | opp_overlap 151057 151055 151096 151097, overlap 151057 GTTACAAAAAGACAA GCGGTCTATTTTTCGCAA TTTT TTGCAAGAAATAGACCGC TTGTTTATAAGCGAA ansB 152166 - 151117 - | L-asparaginase II pyrG 152470 - 154107 + | CTP synthetase TERM 222 154126 - 154150 + F 100 -10.8 -5.00884 | opp_overlap 154125 154126 154129 ACTATTGCTATAAAG TGAGGCGAGT TTTAT ACTCGCCTTA TTTTTTACAAAAAAT TERM 223 154147 - 154129 - f 76 -10.3 -2.70532 | opp_overlap 154126, overlap 154126 154125 ATTGCTATAAAGTGA GGCGAGT TTTAT ACTCGCC TTATTTTTTACAAAA TERM 224 154388 - 154405 + G 71 -4.1 -4.84529 | CACTTCATCTTTATC TTAAGCG ATTC CGCTTTA TTTTTCAGTTTGTCG APJL_0138 154207 - 154713 + | hypothetical protein TERM 225 154715 - 154748 + T 74 -9.8 -2.60512 | opp_overlap 154717 154725, overlap 154725 AATTTGAGGTTTAAT CATAAAAAAACGGC GTTTAA GCCGTTTTTTTATC TCAATTACTCTTAAC TERM 226 154746 - 154717 - T 83 -12.4 -2.72344 | opp_overlap 154715 154725, overlap 154725 TTTGAGGTTTAATCA TAAAAAAACGGC GTTTAA GCCGTTTTTTTA TCTCAATTACTCTTA TERM 227 154725 - 154738 + T 88 -5.2 -5.72616 | opp_overlap 154717 154725, overlap 154715 TTAATCATAAAAAAA CGGC GTTTAA GCCG TTTTTTTATCTCAAT TERM 228 154738 - 154725 - T 88 -5.2 -5.71983 | opp_overlap 154725 154715, overlap 154717 TTAATCATAAAAAAA CGGC GTTTAA GCCG TTTTTTTATCTCAAT leuD 155361 - 154759 - | isopropylmalate isomerase small subunit leuC 156781 - 155372 - | isopropylmalate isomerase large subunit TERM 229 157512 - 157497 - g 71 -9 -3.35597 | overlap 157495 TTTACTGGCGAAAGA GCGTTG GCAA CAACGC TACAAAGAAGAATTT APJL_0141 157123 - 158238 + | hypothetical protein TERM 230 158231 - 158273 + F 73 -3.2 -5.22768 | gap 1, opp_overlap 158262, overlap 158243 158263 TAGGCGCTTCCCTGT TAAAATAATTTGTATTTTT ATCTAA AAAGATGCAAAT-ATTTTA TTTGTTTTTTGTTCT TERM 231 158243 - 158268 + F 74 -2.7 -5.3472 | opp_overlap 158262, overlap 158231 158263 TGTTAAAATAATTTG TATTTTTATCT AAAA AGATGCAAATA TTTTATTTGTTTTTT TERM 232 158263 - 158277 + F 93 -5.8 -5.80727 | opp_overlap 158262, overlap 158243 158231 TTATCTAAAAAGATG CAAATA TTT TATTTG TTTTTTGTTCTTTTT APJL_0142 158366 - 159628 + | hypothetical protein TERM 233 160372 - 160405 + G 74 -6.5 -4.48713 | opp_overlap 160370, overlap 160362 160361 CGATTGCTAATCATG CCGGCGCCGGTGCGG CAGG CGGTATGGGCGGCGG TTTATTATTACTGCC grk 159639 - 160772 + | glycerate kinase APJL_0144 160791 - 161063 + | acylphosphatase TERM 234 161083 - 161132 + T 100 -13.2 -4.36433 | opp_overlap 161086 161089, overlap 161084 161086 161089 AGTGGAGTTTGAATC AGACAAGCGGTTAAATTTGCAA AAAATC TTGTAAATTTAACCGCTTGTGA TTTATTGCTCTTTGA TERM 235 161084 - 161131 + T 100 -16.7 -3.20775 | opp_overlap 161086 161089, overlap 161083 161086 161089 GTGGAGTTTGAATCA GACAAGCGGTTAAATTTGCAA AAAATC TTGTAAATTTAACCGCTTGTG ATTTATTGCTCTTTG TERM 236 161086 - 161129 + T 100 -19.3 -3.14616 | opp_overlap 161086 161089, overlap 161084 161083 161089 GGAGTTTGAATCAGA CAAGCGGTTAAATTTGCAA AAAATC TTGTAAATTTAACCGCTTG TGATTTATTGCTCTT TERM 237 161129 - 161086 - T 100 -17.8 -2.90723 | opp_overlap 161086 161084 161083 161089, overlap 161089 GGAGTTTGAATCAGA CAAGCGGTTAAATTTGCAAA AAAT CTTGTAAATTTAACCGCTTG TGATTTATTGCTCTT TERM 238 161126 - 161089 - T 100 -13.7 -3.59946 | opp_overlap 161086 161084 161083 161089, overlap 161086 GTTTGAATCAGACAA GCGGTTAAATTTGCAAA AAAT CTTGTAAATTTAACCGC TTGTGATTTATTGCT TERM 239 161089 - 161126 + T 100 -15.2 -3.69564 | opp_overlap 161089 161086, overlap 161086 161084 161083 GTTTGAATCAGACAA GCGGTTAAATTTGCAA AAAATC TTGTAAATTTAACCGC TTGTGATTTATTGCT APJL_0145 162693 - 161134 - | ATP-dependent endonuclease TERM 240 162035 - 162023 - G 73 -9.1 -3.53444 | opp_overlap 162023 162022 TTATTCTGTTTTAAA CGCTG GCA CAGCG ATTTGACTTTATTCC APJL_0146 164076 - 162697 - | Rossmann fold nucleotide-binding protein TERM 241 163632 - 163646 + g 71 -8.6 -3.56594 | opp_overlap 163626 163631 163629 AACAAACAATCAGAT TCGGAT CCG ATCCGA TTTCCAACGCTTTGG TERM 242 163853 - 163863 + g 75 -2.4 -5.33405 | GGGTTATGCAATTCG AGCG ATA CGCC TTTTTCTTTAGTAAG APJL_0147 165113 - 164136 - | tRNA-dihydrouridine synthase A TERM 243 164975 - 164995 + g 93 -11.9 -3.70902 | opp_overlap 164978 CGTATTTGGCGTGAA TGATCGCCG GTG CGGTGATCA TTTCGGTATAAAGCA TERM 244 165193 - 165138 - H 75 -5.6 -4.76311 | gap 1, opp_overlap 165141 CATAAATAAAAATAA CAAGCGGTGGAATTTAGCC-GATTTTT GGT AAATTTGGGGCTAAATTTGACCGCTTG TATAGAGTTCAAAAT TERM 245 165506 - 165490 - g 70 -5.1 -4.57341 | overlap 165491 AATCTCTTTGAAAAA CGCTTGA ATA TCAAGCC GTATGAATACCCCGA nrdB_1 165466 - 166443 + | ribonucleoside-diphosphate reductase beta subunit 1 TERM 246 167224 - 167234 + G 73 -5.4 -4.66814 | overlap 167220 GCCGTCAAGCTCGGA CGAA AGT TTCG TTTGTTGTTTATCTT TERM 247 167550 - 167567 + G 76 -7.7 -4.12198 | opp_overlap 167549 167550 AAGAATTAGCGAAAC GTTTCGG TGAA CCGGAAC TTTTAAAAGGTTATG nrdA_1 166430 - 168094 + | ribonucleotide-diphosphate reductase subunit alpha TERM 248 168135 - 168104 - T 90 -13.2 -2.89447 | opp_overlap 168104 168105 168111, overlap 168111 GGTTAATTAGAAGCA TTAAAAACACCACC GAAA GGTGGTGTTTTTAT ATCTGTCTTTAGCAT TERM 249 168104 - 168136 + T 84 -11.6 -3.19687 | gap 1, opp_overlap 168104 168111, overlap 168105 168111 GGTTAATTAGAAGCA T-TAAAAACACCACC GAAA GGTGGTGTTTTTATA TCTGTCTTTAGCATT TERM 250 168105 - 168134 + T 100 -16.7 -3.15257 | opp_overlap 168104 168111, overlap 168104 168111 GTTAATTAGAAGCAT TAAAAACACCACC GAAA GGTGGTGTTTTTA TATCTGTCTTTAGCA TERM 251 168128 - 168111 - T 100 -11.3 -4.8269 | opp_overlap 168105 168104 168111, overlap 168104 TAGAAGCATTAAAAA CACCACC GAAA GGTGGTG TTTTTATATCTGTCT TERM 252 168111 - 168128 + T 100 -11.3 -5.08178 | opp_overlap 168111 168104, overlap 168105 168104 TAGAAGCATTAAAAA CACCACC GAAA GGTGGTG TTTTTATATCTGTCT TERM 253 168204 - 168184 - T 100 -14.1 -5.52384 | opp_overlap 168178 168184 GCCCGATTAAAAAAA GCACGAGTA AAT TACTCGTGC TTTCCATTTATAACT TERM 254 168184 - 168204 + T 100 -14.1 -3.89617 | opp_overlap 168184, overlap 168178 GCCCGATTAAAAAAA GCACGAGTA AAT TACTCGTGC TTTCCATTTATAACT orfG 168828 - 168229 - | putative DNA uptake protein TERM 255 168788 - 168767 - G 75 -8.7 -3.63744 | overlap 168765 TGTTGCTCTAAAAGA CGGCGAAAA TGTG TTTGCGCCG CTTCCGAAATTGAAA TERM 256 168881 - 168895 + H 86 -5.6 -5.31275 | overlap 168882 TTTATCGGATATTCT ACGCCT TAC AGGCGA TTTTTTCTACTCAAA TERM 257 168882 - 168894 + H 78 -9.1 -3.78042 | overlap 168881 TTATCGGATATTCTA CGCCT TAC AGGCG ATTTTTTCTACTCAA TERM 258 169098 - 169114 + H 72 -3.7 -4.89519 | overlap 169101 AAGTGAGCCGATATT TAGGGTA AAA TACCTTG TTTATTTTATCTTGT TERM 259 169101 - 169111 + H 70 -5.4 -4.49673 | overlap 169098 TGAGCCGATATTTAG GGTA AAA TACC TTGTTTATTTTATCT TERM 260 169249 - 169229 - H 77 -10.5 -2.79452 | opp_overlap 169227 169229 169230 169232, overlap 169228 ACGGCTCAAGAGAAG CGATTGCGA TTT TCGCAATCA TATTTTTAACCCAAC TERM 261 169229 - 169249 + H 77 -8.3 -3.90048 | opp_overlap 169229 169228, overlap 169227 169230 169232 ACGGCTCAAGAGAAG CGATTGCGA TTT TCGCAATCA TATTTTTAACCCAAC TERM 262 169230 - 169248 + H 83 -11.8 -2.93708 | opp_overlap 169229 169228, overlap 169229 169227 169232 CGGCTCAAGAGAAGC GATTGCGA TTT TCGCAATC ATATTTTTAACCCAA TERM 263 169232 - 169246 + H 70 -8.6 -3.01831 | opp_overlap 169229 169228, overlap 169230 169229 169227 GCTCAAGAGAAGCGA TTGCGA TTT TCGCAA TCATATTTTTAACCC nqrA 169283 - 170632 + | Na(+)-translocating NADH-quinone reductase subunit A TERM 264 170664 - 170651 - g 73 -3.9 -5.01732 | opp_overlap 170640 AATGGGTTTAAAAAA TCTTT TTGA AAAGA TGGAACCTGCGTTTC nqrB 170637 - 171869 + | Na(+)-translocating NADH-quinone reductase subunit B nqrC 171872 - 172645 + | Na(+)-translocating NADH-quinone reductase subunit C nqrD 172645 - 173268 + | Na(+)-translocating NADH-quinone reductase subunit D nqrE 173270 - 173866 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 265 174787 - 174771 - g 73 -5.9 -4.45544 | overlap 174765 TTTGACCAATTAAAA CGTTTAA AAT CTAAACG TAAAATGTCATTCTG TERM 266 175092 - 175079 - g 70 -5.3 -4.4261 | opp_overlap 175072 175079, overlap 175073 TGTTGAAGACGAAAA CATCT TATT AGATG ATTTCGGTGGTTAAT nqrF 173877 - 175106 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 267 175138 - 175193 + F 100 -16.7 -3.8646 | opp_overlap 175147, overlap 175141 175154 GGGTAAATGTACCCT G-ATTTACAAGCGGTGTGATTTGCAAA GTCT TTTGTAAATCACACCGCTTG-AAGTGC TTTAAATTATTAGTG TERM 268 175141 - 175190 + F 100 -21.1 -2.99849 | opp_overlap 175147, overlap 175138 175154 TAAATGTACCCTGAT TTACAAGCGGTGTGATTTGCAAA GTCT TTTGTAAATCACACCGCTTGAAG TGCTTTAAATTATTA TERM 269 175184 - 175147 - f 100 -18.7 -3.35996 | opp_overlap 175141 175138 175154 TACCCTGATTTACAA GCGGTGTGATTTGCAAA GTCT TTTGTAAATCACACCGC TTGAAGTGCTTTAAA TERM 270 175194 - 175249 + F 85 -10.2 -3.85698 | opp_overlap 175200, overlap 175200 CACCGCTTGAAGTGC TTTAAATTATTAGTGAAAAAGTTTGT TTTT ACAGGCTTTTTCAATAGTAATTTTAA TTTATAAGGGCGGGC TERM 271 175200 - 175243 + F 91 -9.2 -4.61873 | opp_overlap 175200, overlap 175194 TTGAAGTGCTTTAAA TTATTAGTGAAAAAGTTTGT TTTT ACAGGCTTTTTCAATAGTAA TTTTAATTTATAAGG apbE 175313 - 176344 + | thiamine biosynthesis lipoprotein APJL_0158 176357 - 176602 + | hypothetical protein TERM 272 176619 - 176643 + F 85 -7.1 -5.00851 | overlap 176620 176621 TTTAAAATCTCCCCC ATCCCCTCTTT ATT AAAGAGGGGCG TTTTCTTTGATTAAT TERM 273 176620 - 176642 + F 82 -10.6 -3.58884 | overlap 176619 176621 TTAAAATCTCCCCCA TCCCCTCTTT ATT AAAGAGGGGC GTTTTCTTTGATTAA TERM 274 176621 - 176641 + F 93 -14.1 -2.74246 | overlap 176620 176619 TAAAATCTCCCCCAT CCCCTCTTT ATT AAAGAGGGG CGTTTTCTTTGATTA TERM 275 176730 - 176776 + F 78 -5.6 -4.99568 | gap 3, opp_overlap 176736, overlap 176733 176736 GGTAGGGGAGATTCA TAGCAAGCGGTG-AAAAG-CAAA AATT TTTGATTTTTTCACCGCTTG-TA TTTTATTTAATATTA TERM 276 176733 - 176774 + F 86 -9.8 -4.09862 | gap 2, opp_overlap 176736, overlap 176730 176736 AGGGGAGATTCATAG CAAGCGGTG-AAAAG-CAAA AATT TTTGATTTTTTCACCGCTTG TATTTTATTTAATAT trmU 176831 - 178000 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 277 178065 - 178017 - T 87 -12 -3.21924 | opp_overlap 178019, overlap 178019 178022 TGATTGTTTACAATA CATAAGCGGTCGTTTTTTGTTA GTTTT TAGCAAAAAATGACCGCTTATT TTTTAGATTAACGTA TERM 278 178063 - 178019 - T 100 -14.6 -3.17325 | opp_overlap 178019, overlap 178017 178022 ATTGTTTACAATACA TAAGCGGTCGTTTTTTGTTA GTTTT TAGCAAAAAATGACCGCTTA TTTTTTAGATTAACG TERM 279 178019 - 178063 + T 100 -19.7 -5.15969 | opp_overlap 178019 178017 178022 ATTGTTTACAATACA TAAGCGGTCGTTTTTTGTTAG TTT TTAGCAAAAAATGACCGCTTA TTTTTTAGATTAACG TERM 280 178060 - 178022 - T 93 -11.9 -3.72788 | opp_overlap 178019, overlap 178019 178017 GTTTACAATACATAA GCGGTCGTTTTTTGTTA GTTTT TAGCAAAAAATGACCGC TTATTTTTTAGATTA hcaT 179227 - 178073 - | putative 3-phenylpropionic acid transporter TERM 281 178128 - 178114 - G 71 -4.2 -4.91109 | TCGGCACGATAAAAA TTGCCG GCA CTGCAA TAATCGCCATCAGCC APJL_0161 180054 - 179224 - | pyrroline-5-carboxylate reductase TERM 282 179600 - 179631 + g 87 -5.3 -5.42259 | gap 1, opp_overlap 179616 GCGGACATTAGGCTC TCGGCAAATT-GAC AAGCG GTCGAATTTACCGA TTTTTTTGCAAATAA TERM 283 179657 - 179676 + g 74 -9.3 -3.26298 | overlap 179655 AATAACCCGGTCATT CCTTCGC CAATCA GCGAAGG TGTATTTGGCATGGT TERM 284 180065 - 180095 + H 70 -8.2 -3.32844 | CTCATAAAAATCTCC CCCAGCCCCTCTTT ATA AAAGAGGGGAGCGG TTCTCCAATCAGCCC TERM 285 180138 - 180116 - H 81 -8.6 -4.12902 | CAATCAGCCCTAAAA TTCCCTTTTT TAG AAAAAAGGAA GGGGAGATTTGATTA TERM 286 180362 - 180374 + G 72 -7.7 -3.85159 | TTGGTCGAGTCCGCT TTCCG GTT CGGAA TTATTGCATTTTTCA TERM 287 180666 - 180648 - g 80 -8.8 -3.91084 | opp_overlap 180647 GCAGGCTCAAGCAAA CGAGCGGA GGA TACGCTCG CATTATTGCGTAAAA rdgC 180216 - 181124 + | recombination associated protein APJL_0163 181134 - 181739 + | phosphatase/phosphohexomutase TERM 288 181875 - 181852 - T 100 -11 -5.26119 | opp_overlap 181849 GCTTCAAAAAGAAAA GGCACTAGTG AGGA CACTGGTGCC AGCATTTCAGTTTTA TERM 289 181957 - 181931 - T 78 -6.5 -4.67608 | overlap 181933 TATTTCAATAGAAAA CACTCTCTCCC CTTGT GGGAGAGAGAC AGTAAAAATTGCGTC TERM 290 181955 - 181933 - T 100 -13.5 -3.94773 | overlap 181931 TTTCAATAGAAAACA CTCTCTCCC CTTGT GGGAGAGAG ACAGTAAAAATTGCG APJL_0164 183775 - 181994 - | anaerobic ribonucleoside triphosphate reductase APJL_0165 184247 - 183780 - | organic radical activating protein rnfA 184629 - 185210 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 291 185259 - 185279 + G 100 -11.9 -4.20042 | overlap 185244 TTGCGATTGCCGTGA TCGCACTGA TTT TCGGTGCGA TTTTGGGCTATTCGT rnfB 185210 - 185821 + | electron transport complex protein RnfB TERM 292 186050 - 186036 - g 70 -5.6 -4.32049 | GATAACGTATTAAAA GGACAG CCG CTGACC AAAGGCGATAACTAT TERM 293 186069 - 186054 - g 75 -9 -3.72893 | CAGCCGCTGACCAAA GGCGAT AACT ATCGCC AGTTACCGGTACACG TERM 294 187912 - 187899 - g 71 -6.7 -4.23434 | GAAAATACCGGAAAA GTTGC AACC GCAAC AGAAGCGGAAGACCC rnfC 185814 - 188126 + | electron transport complex protein RnfC TERM 295 188312 - 188326 + G 80 -4.9 -5.08824 | overlap 188313 188324 TGCGTGATGTGATGA TCGGC AGTAC GCCGG TTTTTTGGATGAAGC APJL_0169 188119 - 188763 + | membrane protein TERM 296 189230 - 189252 + G 70 -7.6 -3.58518 | opp_overlap 189229 189233 189234, overlap 189233 ATTGATTTATTAAAC GAACCGCCGA CAT TCGGCGATGC TATTTCGTTAGTGTT TERM 297 189249 - 189233 - g 80 -10.1 -3.57418 | opp_overlap 189233 189230, overlap 189229 189234 GATTTATTAAACGAA CCGCCGA CAT TCGGCGA TGCTATTTCGTTAGT TERM 298 189248 - 189234 - g 81 -11.4 -2.73969 | opp_overlap 189233 189230, overlap 189233 189229 ATTTATTAAACGAAC CGCCGA CAT TCGGCG ATGCTATTTCGTTAG rnfD 188783 - 189829 + | electron transport complex protein RnfD TERM 299 189869 - 189886 + G 70 -7.7 -3.61371 | overlap 189872 AGTATGCGTTATTAT TAGGCGC GATT GCGCTTA TTTGCACTGCCGTTT TERM 300 189872 - 189883 + G 72 -7.2 -3.9392 | overlap 189869 ATGCGTTATTATTAG GCGC GATT GCGC TTATTTGCACTGCCG TERM 301 190249 - 190232 - g 75 -7.1 -4.3739 | opp_overlap 190231 GATTGGGCGATAAAA TTGAAAC ACGT GTTTCAA ATTGGATTTTGTCGT rnfG 189829 - 190461 + | electron transport complex protein RnfG rnfE 190473 - 191159 + | SoxR-reducing system protein RsxE TERM 302 191289 - 191315 + G 78 -5.9 -4.82901 | TTCTGGCTTATGTGC CGGCTCGTTTA CGTGA TAAATTAGCCG TTTTTGTCGGAAGAG TERM 303 192089 - 192107 + G 74 -10.2 -2.71125 | opp_overlap 192090, overlap 192088 192086 TTACGTTTACTCAAA ACTCGCCG AAA CGGCGAGG ATATTTATAAACGCT TERM 304 192106 - 192090 - g 100 -13.7 -4.18494 | opp_overlap 192089 192088 192086 TACGTTTACTCAAAA CTCGCCG AAA CGGCGAG GATATTTATAAACGC lpxM 191168 - 192124 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 305 192145 - 192162 + T 100 -12.7 -5.69473 | opp_overlap 192145 AACGATGATAAAAAA CCGAGCG TTTT CGCTCGG TTTTTTTGTCGTATG TERM 306 192162 - 192145 - T 100 -12.7 -5.33785 | opp_overlap 192145 AACGATGATAAAAAA CCGAGCG TTTT CGCTCGG TTTTTTTGTCGTATG APJL_0174 193170 - 192184 - | hypothetical protein TERM 307 192464 - 192476 + g 80 -4.8 -5.14563 | GCGATGACCATCATT TGCG AATCG CGCA TTTTTTGGTAGAGCA TERM 308 192986 - 192962 - G 78 -5.8 -4.84761 | gap 1 ATAGCTTGAGAAAAA CGACGG-TAAT AGTC ATCAACCGTCG AGTTACGTTTCACTT TERM 309 193235 - 193217 - H 91 -4.6 -5.81412 | opp_overlap 193217 193219 TTTAGGTAAAAAAAA GATCTC TAGCGAG GAGATC TGTTAAAAATTGAAA TERM 310 193294 - 193262 - H 93 -6.4 -5.49809 | gap 1, opp_overlap 193270 193273, overlap 193264 GAAATGCCAAAAAAA GAGCCAAGCACCATA GCGA TATGATGTTTGGC-C TAAATGAGTGTTTAA TERM 311 193293 - 193264 - H 91 -10.1 -4.36993 | opp_overlap 193270 193273, overlap 193262 AATGCCAAAAAAAGA GCCAAGCACCATA GCGA TATGATGTTTGGC CTAAATGAGTGTTTA TERM 312 193361 - 193377 + H 91 -9.5 -4.36914 | TCCTTTCTGGCACTA GGACTAT AGT ATAGTCC TTTTATCGGAAGAAA TERM 313 194029 - 194005 - g 75 -2.1 -5.40464 | overlap 194009 TACGATAAAGAAAAA TTAGCGAATCC GCC GAAATCGTTAA AAGAATTGGTGGAAC tbpA 193612 - 194577 + | thiamine-binding periplasmic protein TERM 314 194600 - 194621 + F 100 -11.7 -5.25699 | ATTCATCTTTTTTCA TGGCTAAAG GAAT CTTTAGCCA TTTTTCTTGTCTGCT TERM 315 194682 - 194658 - f 70 -2.9 -5.09245 | TGAAAATTATAAAAA TTTTTGCAAAT TCT AATTGCCAAAA GGGATTACATTTGCT dksA 194784 - 195233 + | dosage-dependent DnaK suppressor protein TERM 316 195265 - 195290 + F 95 -8.5 -4.95806 | gap 1, opp_overlap 195265 195267, overlap 195267 ATAAACGGCAATGAA TA-TGGACAATG TTA CATTGTCCATTA TTTTTATGATCATTT TERM 317 195289 - 195265 - f 78 -10.1 -3.39471 | opp_overlap 195265 195267, overlap 195267 ATAAACGGCAATGAA TATGGACAATG TTA CATTGTCCATT ATTTTTATGATCATT TERM 318 195267 - 195287 + F 100 -12.7 -4.56153 | opp_overlap 195265 195267, overlap 195265 AAACGGCAATGAATA TGGACAATG TTA CATTGTCCA TTATTTTTATGATCA TERM 319 195287 - 195267 - f 90 -12.7 -3.25941 | opp_overlap 195267 195265, overlap 195265 AAACGGCAATGAATA TGGACAATG TTA CATTGTCCA TTATTTTTATGATCA TERM 320 195590 - 195580 - g 76 -2.6 -5.26316 | TTATTGCACAAAAAA TTTA CAG TAAA TGCCGGACATTATGA pcnB 195376 - 196908 + | polyA polymerase TERM 321 196919 - 196940 + F 100 -8.7 -5.07652 | opp_overlap 196918 AATAAATTGAAGTAT GGCGCAAGT GAGA GCTTGTGCC TTTTCTTTTAGCAAG folK 196978 - 197448 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 322 197477 - 197450 - T 81 -11.4 -2.67747 | opp_overlap 197455, overlap 197455 TGGTCACATTATAAG TAAAATGCACGG CAAT CCGTGCATTTTT TTAACCTATTCTATC TERM 323 197472 - 197455 - T 95 -11.3 -4.51777 | opp_overlap 197455, overlap 197450 ACATTATAAGTAAAA TGCACGG CAAT CCGTGCA TTTTTTTAACCTATT TERM 324 197455 - 197472 + T 100 -11.3 -5.46629 | opp_overlap 197455 197450 ACATTATAAGTAAAA TGCACGG CAAT CCGTGCA TTTTTTTAACCTATT APJL_0179 197704 - 197483 - | hypothetical protein APJL_0180 200430 - 197701 - | hypothetical protein TERM 325 197880 - 197896 + g 76 -7.9 -4.15222 | CGTCCAATACCATTT CGCCGGT TGA ACCGACG TTTATTAAACCGCGT TERM 326 198080 - 198102 + g 76 -7 -4.47271 | CCCTCCAGCCAAAAC GGTAAAGTGG CAT TCGCTTTGCC TTTTAATTCAATTTG TERM 327 198205 - 198176 - G 83 -9.4 -3.92542 | GCCAGTTTTAAATAA GCGATTTGCGTT TGCGGC AAGGCAAATCGC TCGACATTCAATTCT TERM 328 200397 - 200362 - G 76 -7.6 -4.13767 | gap 1, overlap 200364 200365 TTGCTTACCTGAAAA CAGCGTTGCACCGCCGA CAA TCAGCAGTGCAAC-CAA AGTCCCTATAACAAG TERM 329 200395 - 200364 - G 100 -12.4 -3.6692 | gap 1, overlap 200362 200365 GCTTACCTGAAAACA GCGTTGCACCGCCGA CAA TCAGCAGTGCAAC-C AAAGTCCCTATAACA TERM 330 200395 - 200365 - G 89 -12.6 -2.79831 | overlap 200364 200362 CTTACCTGAAAACAG CGTTGCACCGCCGA CAA TCAGCAGTGCAACC AAAGTCCCTATAACA APJL_0181 200951 - 200430 - | hypothetical protein TERM 331 200480 - 200493 + g 75 -3.1 -5.1517 | gap 1 ATAAGGTGGCTAATG TCCAGC CAA GC-GGA TTTTTAATTTGTTTT TERM 332 200707 - 200694 - G 71 -2.3 -5.2166 | overlap 200697 TAATAATTTAAAAAA GACGT CAAG ACGAC TTTTCGCCAACATTA TERM 333 200933 - 200921 - G 70 -7.7 -3.7076 | AATAAAAAAGACTAA GCATC AAA GATGC AACGCCGGCAAGTGC TERM 334 201208 - 201224 + H 81 -2.9 -5.76949 | overlap 201210 ATTGGTAAAAGTGCA TGTGTGG CAA CCTCATA TTTTTTTTCGGAATC gloA1 201352 - 201759 + | lactoylglutathione lyase TERM 335 201747 - 201735 - f 79 -3.4 -5.48213 | opp_overlap 201735 TATCGAAAATAAAAA TGCA CAGGC TGCA TTAGGTAACTAATCG TERM 336 201807 - 201856 + F 100 -8.9 -5.27335 | gap 1 ATTTTTATGGCGTAA GCGGTCAAATTTTGAGGA-AATTT TGC AAATTCTCTTTAAAATCCGACCGC TTTTTCTTTAGACGG rnt 201899 - 202555 + | ribonuclease T TERM 337 202568 - 202626 + T 84 -9.9 -3.6767 | gap 1, opp_overlap 202570, overlap 202570 202573 TAATATATTTAAAAA AACAAGCGGTCTATTTTCCTTATTGCTT TGCA AAAAAATC-GGAAAATAGACCGCTTGTG TATTTCTATCTGATT TERM 338 202570 - 202624 + T 93 -12.5 -3.40481 | gap 1, opp_overlap 202570, overlap 202568 202573 ATATATTTAAAAAAA CAAGCGGTCTATTTTCCTTATTGCTT TGCA AAAAAATC-GGAAAATAGACCGCTTG TGTATTTCTATCTGA TERM 339 202624 - 202570 - T 100 -14.7 -5.51402 | gap 1, opp_overlap 202570 202568 202573 ATATATTTAAAAAAA CAAGCGGTCTATTTTCCTTATTGCTT TGCA AAAAAATC-GGAAAATAGACCGCTTG TGTATTTCTATCTGA TERM 340 202573 - 202621 + T 74 -8.4 -3.81885 | gap 1, opp_overlap 202570, overlap 202570 202568 TATTTAAAAAAACAA GCGGTCTATTTTCCTTATTGCTT TGCA AAAAAATC-GGAAAATAGACCGC TTGTGTATTTCTATC APJL_0184 203925 - 202648 - | manganese transporter NRAMP TERM 341 204436 - 204400 - R 73 -6.6 -4.22346 | gap 1, opp_overlap 204404 204409 204434, overlap 204409 TAAATGTACTGAAAA CGATAC-AAAGGCTCCG ATAA CGGAGCCTTTCGCTTTG CTTTATAAGCGGTCT TERM 342 204404 - 204432 + r 79 -8.2 -4.13995 | gap 1, opp_overlap 204400 204409, overlap 204409 TGTACTGAAAACGAT AC-AAAGGCTCCG ATAA CGGAGCCTTTCGC TTTGCTTTATAAGCG TERM 343 204409 - 204426 + r 95 -12.7 -3.90943 | opp_overlap 204400 204409, overlap 204404 TGAAAACGATACAAA GGCTCCG ATAA CGGAGCC TTTCGCTTTGCTTTA TERM 344 204426 - 204409 - R 95 -12.7 -4.20797 | opp_overlap 204409 204404, overlap 204400 TGAAAACGATACAAA GGCTCCG ATAA CGGAGCC TTTCGCTTTGCTTTA TERM 345 204442 - 204497 + r 89 -10.9 -4.1023 | gap 1, opp_overlap 204445, overlap 204434 204445 TTTCGCTTTGCTTTA TAAGCGGTCTAATTTTTATTTCTTTT CGCAA AAAAGTA-TGGAAATTAGACCGCTTG TTATTATTTCCGATT TERM 346 204445 - 204494 + r 89 -10.4 -4.16033 | gap 1, opp_overlap 204445, overlap 204434 204442 CGCTTTGCTTTATAA GCGGTCTAATTTTTATTTCTTTT CGCAA AAAAGTA-TGGAAATTAGACCGC TTGTTATTATTTCCG tyrA 205622 - 204501 - | bifunctional chorismate mutase/prephenate dehydrogenase TERM 347 205344 - 205361 + g 71 -4.1 -4.78077 | overlap 205347 ATGAATATGCGGATT CGTGGTT TTAA AACCGTG TTTGTTTTCATTCAC TERM 348 205423 - 205445 + g 80 -9.8 -3.61398 | overlap 205422 TCTTCGATTAAGTCG GCGGGAACGC CTT GCTTTTCCGC TTCTTGACGGCGGGC TERM 349 205575 - 205591 + g 70 -5.9 -4.35483 | overlap 205577 CAGTCGGATTAATTG TTGATCA ACT TGATCGA TTTGTTCTCGTAAAG aroF 206796 - 205735 - | phospho-2-dehydro-3-deoxyheptonate aldolase APJL_0187 207884 - 206838 - | putative glycosyltransferase TERM 350 207950 - 207933 - R 100 -12.7 -4.88228 | opp_overlap 207933 AGCGAATAGTAAAAA CCCACGC TTTT GCGTGGG TTCGGTCTGATTAAA TERM 351 207933 - 207950 + r 90 -12.7 -3.16267 | opp_overlap 207933 AGCGAATAGTAAAAA CCCACGC TTTT GCGTGGG TTCGGTCTGATTAAA pykA 209312 - 207972 - | pyruvate kinase II TERM 352 209372 - 209383 + H 74 -3 -5.34365 | CGGTAGCTGGACCCA TTGT ACAA ACAA TTTTTGTTCTTCTGA sixA 209543 - 210034 + | phosphohistidine phosphatase TERM 353 210054 - 210070 + F 76 -2.4 -5.43866 | TAGGTTTTAGGGGGA TAAAAA AATTA TTTTTA TTTTTTTAGAAATTG TERM 354 210134 - 210118 - f 95 -10.9 -4.7078 | CCAATTATGTAAAAA GTGCGTA TCA TACGCAC CTCAAAATCAGCTGA TERM 355 210155 - 210142 - f 70 -6.7 -4.15006 | ATACGCACCTCAAAA TCAGC TGAA GCTGA CATAGATTGATTAAA TERM 356 210167 - 210198 + F 91 -11.8 -3.73386 | opp_overlap 210171 210173, overlap 210173 CTGACATAGATTGAT TAAAGAGTACGGTT TTTT AGCCGTACTTTTTA TTTGGATAGTTATCT TERM 357 210173 - 210192 + F 100 -8.6 -5.30616 | opp_overlap 210171 210173, overlap 210167 TAGATTGATTAAAGA GTACGGTT TTTT AGCCGTAC TTTTTATTTGGATAG TERM 358 210595 - 210582 - g 71 -3.1 -5.011 | gap 1, opp_overlap 210583 210583, overlap 210583 210584 AGGTAAACAAGAAAA TGGCGG GAT CCG-CA CTTTTACGCGAACCC APJL_0190 210257 - 211219 + | putative dehydrogenase fis 211247 - 211543 + | DNA-binding protein Fis TERM 359 211534 - 211556 + T 100 -8.6 -5.08824 | opp_overlap 211533 ATTAAAAAAATACGG TATGGGTTAA TTT TTAACTCATA TTTTTTCCATAAAAA TERM 360 211592 - 211573 - T 100 -10.8 -5.24129 | opp_overlap 211573 TTTTTCCATAAAAAA GGCTATTC CGTT GAATAGCC TTTTTTGTATTTTGT TERM 361 211573 - 211592 + T 100 -10.8 -5.65678 | opp_overlap 211573 TTTTTCCATAAAAAA GGCTATTC CGTT GAATAGCC TTTTTTGTATTTTGT APJL_0192 212966 - 211608 - | putative sodium-dependent transporter TERM 362 212911 - 212888 - G 76 -11 -2.72043 | overlap 212887 AAGTCGCCCCGAAAC CGACGGTCGC CCCT GCAACCGTCA TCACATAAGCCAATC dam 213864 - 213031 - | DNA adenine methylase TERM 363 213600 - 213584 - G 77 -3.6 -5.08601 | CGAGCGTAATAAAAA GAGGCG GTATT CGCTTC GGAAGCTAAAAAAAG TERM 364 213790 - 213767 - G 100 -12.4 -4.0825 | opp_overlap 213765 213764 213764 GGTTCAACGAAACAA GCCCCCTGAG CAGA CTTAGGGGGC AAATGTTTACGAATT aroB 214846 - 213857 - | 3-dehydroquinate synthase aroK 215552 - 215031 - | shikimate kinase mrcA 218381 - 215814 - | penicillin-binding protein 1A TERM 365 216365 - 216401 + g 84 -11.6 -3.13343 | opp_overlap 216362 216363 CGCCGCTGATAACGC GCGGCGCATAACGG GTTTCCGTA CCGTTTTGTGCCGC TTCGGTCATTAAACT TERM 366 217480 - 217493 + g 70 -3.7 -4.77157 | AAGTTCTCGCTTAAT GCGTC TTGC GCCGC TTTTTGGTCGGTTGA TERM 367 219129 - 219150 + G 80 -6.5 -4.78848 | opp_overlap 219129, overlap 219131 AAGCAGCTGGAATTA CCGGATTCG ATAA CGGATCCTG TTTTATATTTAACCG TERM 368 219131 - 219148 + G 74 -7.7 -4.00843 | opp_overlap 219129, overlap 219129 GCAGCTGGAATTACC GGATTCG ATAA CGGATCC TGTTTTATATTTAAC APJL_0197 218520 - 219200 + | Tfp pilus assembly protein APJL_0198 219182 - 219703 + | hypothetical protein APJL_0199 219706 - 220233 + | hypothetical protein APJL_0200 220226 - 220630 + | hypothetical protein hofQ 220642 - 221940 + | type II secretory protein nusB 222066 - 222479 + | transcription antitermination protein NusB TERM 369 222494 - 222517 + F 91 -6 -5.70829 | ATTTATGGATAAAAA GAAGGTGAGC GTAG GTTTGCCTTC TTTTTTTGTGCTGTT TERM 370 223134 - 223146 + G 70 -5.5 -4.46656 | overlap 223135 AGTCGAATTGGGGCT TGCTC TAC GAGCG TTTTCCTGTTGTGCG thiL 222547 - 223509 + | thiamin-monophosphate kinase TERM 371 223542 - 223530 - g 70 -3.5 -4.83593 | AATAACGATGAAAAA TTTTA ACT TAAAA AATCCGATTCATTTA pgpA 223522 - 223995 + | phosphatidylglycerophosphatase A TERM 372 224561 - 224572 + G 82 -2.2 -5.62288 | opp_overlap 224543, overlap 224543 224542 GCTATATTGATAATA TCGC CGGC GTGA TTTTTATTTTATTCG rhtB 224011 - 224634 + | threonine efflux protein TERM 373 224636 - 224673 + T 100 -20.9 -3.61268 | opp_overlap 224636 224642, overlap 224642 TAATCGGCGGTTAAA CTAAAACAGGCTTACGT TTTT GCGTAAGCCTGTTTTAG TTTCGAGATTAGATG TERM 374 224673 - 224636 - T 100 -20.2 -3.53761 | opp_overlap 224636 224642, overlap 224642 TAATCGGCGGTTAAA CTAAAACAGGCTTACG TTTTTG CGTAAGCCTGTTTTAG TTTCGAGATTAGATG TERM 375 224642 - 224667 + T 100 -14.1 -4.55128 | opp_overlap 224642 224636, overlap 224636 GCGGTTAAACTAAAA CAGGCTTACGT TTTT GCGTAAGCCTG TTTTAGTTTCGAGAT TERM 376 224667 - 224642 - T 100 -13.4 -4.54727 | opp_overlap 224636 224642, overlap 224636 GCGGTTAAACTAAAA CAGGCTTACG TTTTTG CGTAAGCCTG TTTTAGTTTCGAGAT APJL_0206 225719 - 224682 - | putative tRNA/rRNA methyltransferase TERM 377 224996 - 225028 + g 80 -10.5 -3.55444 | opp_overlap 224981 224995, overlap 224982 CGCCTTCGGCAACAC GTGCCGCAGCGCTTG AAT TAAGCGTATCGGCAC TTTCGACAATCACAC TERM 378 225425 - 225451 + g 93 -4.3 -5.88197 | overlap 225434 TTTTCTTAATTTTCT CCGGTGCGC GAGGAGAAA GCGGGCCGG TTTTTTTCTCTTTCA TERM 379 225929 - 225905 - g 80 -11.5 -2.64412 | opp_overlap 225892 225891, overlap 225891 225904 225902 CCCAATGTTAAACAT TGCTATTCGTG CTG CACGAAAAGCA GGCAATATTATTGCG suhB 225894 - 226697 + | inositol-1-monophosphatase TERM 380 226721 - 226774 + F 78 -9.8 -3.43071 | gap 1, opp_overlap 226721 226723 226739, overlap 226736 226739 TTAAACCATAGATTA CACGGATAAGGC-AAGTAAGCGG TCGAATTTT CCGCTTATTTTGCAATATCCGTG TTAATTCGTGTGGGA dxs 226818 - 228671 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 381 228694 - 228680 - T 85 -2.8 -5.80003 | overlap 228682 TCAATAAACAAAAAA GCTCAT CTT ATGATC TGACCCCAAAAAGTT TERM 382 228726 - 228758 + T 100 -12.1 -4.5852 | opp_overlap 228726 GACTGTTTAATTTAA GGACTGAGTTCTGTA TTG TACAGGGCTGAGTCC TTTTAATTTCACTTG APJL_0209 229535 - 228717 - | transposase TERM 383 229372 - 229354 - G 71 -2.4 -5.09225 | ATCGCACCCAAAAAA TCACGTAA CTT TAACGTAA TACGACGATAGCCGT APJL_0210 229891 - 229541 - | transposase and inactivated derivative APJL_0211 230053 - 229898 - | transposase and inactivated derivative glyA 231408 - 230143 - | serine hydroxymethyltransferase TERM 384 230709 - 230699 - G 79 -8.2 -4.14764 | GCGGAAAGAATTAAA CCGC CGC GCGG ACCGCCTAAAGTTTT TERM 385 231460 - 231439 - R 81 -7.3 -4.59342 | opp_overlap 231439, overlap 231440 TTGATGATAAATAAA GTTGCGCAA ACGT TTGCGCAAA TGAGTTTAACTGCAT TERM 386 231459 - 231440 - R 82 -10.8 -3.34882 | opp_overlap 231439, overlap 231439 TGATGATAAATAAAG TTGCGCAA ACGT TTGCGCAA ATGAGTTTAACTGCA TERM 387 231624 - 231606 - R 95 -10.3 -4.431 | TATTTACCGACAAAA GGCACTC GGACA GAGTGCC TAAGCGAAAAGAAAT pnnK 232526 - 231639 - | inorganic polyphosphate/ATP-NAD kinase APJL_0214 235964 - 232617 - | helicase TERM 388 233232 - 233250 + g 89 -3.8 -5.72622 | opp_overlap 233235, overlap 233235 ACCCGGGCGGCAGAA TATCGGTT CCG AGCCGTTA TTTTTTGTTTGTAAA TERM 389 233235 - 233247 + g 75 -5.5 -4.9072 | opp_overlap 233235, overlap 233232 CGGGCGGCAGAATAT CGGTT CCG AGCCG TTATTTTTTGTTTGT TERM 390 233297 - 233311 + g 82 -5.7 -5.00884 | opp_overlap 233296 233297 GTAGCAATAAAATAT TTGCC TGTGT GGCAA TTTTTTCAGGACGAT TERM 391 235518 - 235501 - G 82 -7.7 -4.43208 | opp_overlap 235504, overlap 235502 ATAGCTTCAAACAAA CGAGTGG AAAT CCACTCA TGTCGATAACAATCA TERM 392 235517 - 235502 - G 71 -9 -3.25202 | opp_overlap 235504, overlap 235501 TAGCTTCAAACAAAC GAGTGG AAAT CCACTC ATGTCGATAACAATC cas1 236917 - 235961 - | CRISPR-associated protein APJL_0216 239736 - 239167 - | hypothetical protein APJL_0217 240734 - 239739 - | CRISPR-associated protein TERM 393 240430 - 240452 + g 70 -7.8 -3.57971 | opp_overlap 240430 240446 TCATTACAAACATTA GGTTTACCTT CAA AAGGTAAAAC TTTACAGGTAAATCT APJL_0218 241695 - 240736 - | CRISPR-associated protein TERM 394 241270 - 241281 + g 78 -4.4 -5.09173 | ACCGGCAATTCGCTG TTGC ATAA GCAA TTTTTTACAATGTTC TERM 395 241420 - 241432 + g 95 -4.7 -5.75342 | opp_overlap 241421, overlap 241421 TTCCTCGATAATGGA AGGCG AAT CGCCA TTTTTTTTGAGAGGG TERM 396 241421 - 241431 + g 77 -8.2 -4.04482 | opp_overlap 241421, overlap 241420 TCCTCGATAATGGAA GGCG AAT CGCC ATTTTTTTTGAGAGG TERM 397 241602 - 241582 - G 76 -11.1 -2.50994 | overlap 241581 GCTAAGTGCATGAAT CGCACCGGT AAA ACCGGTGAG TGCAGGAAAACCATA APJL_0219 243041 - 241692 - | CRISPR-associated protein TERM 398 242872 - 242886 + g 71 -4.3 -4.77719 | opp_overlap 242872, overlap 242864 GCGGTATGAAGCCAA GTATC TAGCC GATAC TTTTCTTCGCTTTTG TERM 399 243136 - 243115 - H 70 -3.2 -4.99056 | overlap 243131 CAATATAATTAAAAA TTTAAATT AAAAAA AATTTAAA ATAAAGTGGATTAAT TERM 400 243141 - 243131 - H 90 -2.6 -6.02546 | overlap 243115 TTAAATTAAAAAAAA TTTA AAA TAAA GTGGATTAATTTTTG TERM 401 243177 - 243163 - H 87 -11.4 -3.53761 | TAATTTTTGGGGAAA CCGCTG ATA CAGCGG TGAAAGTTTTAGATA TERM 402 243252 - 243275 + H 80 -6 -5.03747 | opp_overlap 243252 243254, overlap 243257 243268 TCAGTCTACCGAATA TAGCTCGCTT ATAC AAGCGGTCTA TTTTTTGAGAAATTT TERM 403 243412 - 243425 + H 100 -8.1 -5.61881 | AAGATTCAAATCAGG CCGCT TGTC AGCGG TTTTTATTTTTAAAC TERM 404 243786 - 243763 - g 73 -5.3 -4.65895 | TCCCGGATGTAAAAA TGGCGATTG GCCCGA CAATCGACA ACGGTTTCTATTATG thrS 243489 - 245420 + | threonyl-tRNA synthetase TERM 405 245440 - 245457 + F 100 -11.3 -5.76237 | opp_overlap 245440 ATTATTTGTAAAAAA GCGGTCA AATT TGACCGC TTTTTTGTTTATGTA TERM 406 245457 - 245440 - f 100 -11.3 -5.03715 | opp_overlap 245440 ATTATTTGTAAAAAA GCGGTCA AATT TGACCGC TTTTTTGTTTATGTA APJL_0221 245562 - 246236 + | putative lipoprotein TERM 407 246457 - 246435 - g 72 -6.3 -4.28651 | gap 1 ATCAAAATGGCAAAA GATGCG-CAG AAAC CTGTCGCACC CGGCGTATACGGGCA APJL_0222 246267 - 246593 + | hypothetical protein APJL_0223 246605 - 247264 + | hypothetical protein TERM 408 247277 - 247302 + F 78 -7.7 -4.29845 | opp_overlap 247264 247277, overlap 247264 TAGCTGTATATTATA TAAGCTCTTAA CTTA TTAGGGGCTTA TTTTAACTTAGGTTC infC 247542 - 248021 + | translation initiation factor IF-3 TERM 409 248034 - 248069 + F 84 -9.8 -3.79419 | opp_overlap 248039 248059, overlap 248039 TAATTTATTCTTGCA TAAAACGGGCGGATCT TATA AAATCCGTCCGTTTTC TCTTTTGTAAAAAAG TERM 410 248039 - 248064 + F 100 -9.7 -4.94487 | opp_overlap 248039 248059, overlap 248034 TATTCTTGCATAAAA CGGGCGGATCT TATA AAATCCGTCCG TTTTCTCTTTTGTAA TERM 411 248064 - 248039 - f 91 -9.7 -4.3739 | opp_overlap 248039 248034, overlap 248059 TATTCTTGCATAAAA CGGGCGGATCT TATA AAATCCGTCCG TTTTCTCTTTTGTAA APJL_0225 248270 - 248467 + | 50S ribosomal protein L35 rplT 248535 - 248888 + | 50S ribosomal protein L20 TERM 412 248925 - 248908 - f 86 -12.7 -2.79106 | opp_overlap 248908, overlap 248905 248903 248899 AAAGAATAGAGATTA GGACGCC TTCG GGCGTCC TTTTTTATAGGATGC TERM 413 248908 - 248925 + F 100 -12.7 -5.26316 | opp_overlap 248908 248905 248903 248899 AAAGAATAGAGATTA GGACGCC TTCG GGCGTCC TTTTTTATAGGATGC APJL_0227 248937 - 249473 + | hypothetical protein TERM 414 249669 - 249659 - g 74 -4.6 -4.855 | GAAAAACAAAAACAA CGCG TGG CGCA ACAAATTGAGCCGGA APJL_0228 249506 - 249799 + | hypothetical protein APJL_0229 249878 - 250387 + | transposase and inactivated derivative TERM 415 250556 - 250574 + G 71 -2.4 -5.09225 | ACGGCTATCGTCGTA TTACGTTA AAG TTACGTGA TTTTTTGGGTGCGAT APJL_0230 250393 - 250716 + | putative transposase-like protein APJL_0231 250740 - 250880 + | transposase TERM 416 251078 - 251046 - g 100 -12.1 -4.5852 | opp_overlap 251046 CAAGTGAAATTAAAA GGACTCAGCCCTGTA CAA TACAGAACTCAGTCC TTAAATTAAACAGTC APJL_0232 250896 - 251087 + | transposase APJL_0233 252430 - 251135 - | hypothetical protein TERM 417 251294 - 251313 + g 75 -8.6 -3.89215 | overlap 251289 GCCGATGGTTTCATA GTTTTCCG CATT CGGGAAAC TTTCGATTTCTAACG TERM 418 251591 - 251609 + g 81 -5.2 -5.11613 | CAGTAATTTCGCATC CGTTAGCG ACA CGTTATCG TTTTTTAGGTACTGT TERM 419 252018 - 252030 + g 71 -3.3 -5.03314 | opp_overlap 252010, overlap 252019 ATCATAACGCCGATG GTGCG CAC CGCAA TTTTTTCCGGATAGG rluA 253124 - 252474 - | RNA pseudouridine synthase gpmB 253174 - 253806 + | phosphoglycerate mutase TERM 420 253865 - 253827 - T 74 -4.6 -4.95854 | opp_overlap 253826 253830 253855, overlap 253819 253828 253830 253855 CAAAAAATCCAAAAA TTAGACCGCTTATTTG CGTTGTT CAAATTAGCGGTCTTG CTATTTTTTATTGGG TERM 421 253864 - 253828 - T 72 -8.1 -3.55072 | opp_overlap 253826 253830 253855, overlap 253819 253827 253830 253855 AAAAAATCCAAAAAT TAGACCGCTTATTTG CGTTGTT CAAATTAGCGGTCTT GCTATTTTTTATTGG TERM 422 253830 - 253862 + T 86 -10.7 -3.7076 | opp_overlap 253819 253828 253827 253830 253855, overlap 253826 253855 AAAATCCAAAAATTA GACCGCTTATTTG CGTTGTT CAAATTAGCGGTC TTGCTATTTTTTATT TERM 423 253862 - 253830 - T 80 -10.7 -3.31103 | opp_overlap 253830 253826 253855, overlap 253819 253828 253827 253855 AAAATCCAAAAATTA GACCGCTTATTTG CGTTGTT CAAATTAGCGGTC TTGCTATTTTTTATT TERM 424 253855 - 253868 + T 79 -3.1 -5.4756 | opp_overlap 253830 253828 253827 253855, overlap 253830 253826 TTGCGTTGTTCAAAT TAGCG GTCT TGCTA TTTTTTATTGGGCTT APJL_0236 254286 - 253873 - | Holliday junction resolvase-like protein APJL_0237 254899 - 254339 - | hypothetical protein APJL_0238 255630 - 254899 - | hypothetical protein TERM 425 255215 - 255249 + g 80 -2.9 -5.47159 | gap 1, overlap 255217 255218 255219 CGTCCGCATTGTTCG CAAGCGGCAATCGCAA TTTT TTGCCATTGCTG-TAG TTTTTTGTCTTGGCG TERM 426 255219 - 255246 + g 76 -9.2 -3.50491 | overlap 255218 255217 255215 CGCATTGTTCGCAAG CGGCAATCGCAA TTTT TTGCCATTGCTG TAGTTTTTTGTCTTG APJL_0239 256396 - 255806 - | putative lipoprotein TERM 427 256171 - 256193 + g 71 -4.2 -4.82154 | overlap 256172 CGACTTCCGGGCTTG AGGTTAAATA AGT TATTTGACCG TTTTTCGTATAACTT TERM 428 256685 - 256702 + G 100 -11.3 -4.14004 | opp_overlap 256679 256683 AGGGAATAAGAACGG TCGCTCG TCAC CGAGCGA TTTATACTTGTCTTG bolA 256525 - 256836 + | putative transcriptional regulator TERM 429 257096 - 257107 + T 74 -3 -5.39221 | opp_overlap 257096 CTTGGTTAAGTTAAA GTAA TTAA TTAC TTTTTTAATTATTAT TERM 430 257128 - 257146 + T 100 -11.7 -5.60993 | TAATTATTATTTTCA TCCCCGG TTTTT CCGGGGA TTTTTTTATCCGGCG TERM 431 257168 - 257224 + T 81 -7.3 -4.59489 | opp_overlap 257184, overlap 257171 257180 257184 TATCCGGCGTATTGG CGTTCGATATGAAAAAGCCCGTAACAT CGA ATGCTACGGGCTTGGTTTTATCGGTTG TTTCTTATTTCACTT TERM 432 257171 - 257221 + T 91 -9.8 -4.38503 | opp_overlap 257184, overlap 257168 257180 257184 CCGGCGTATTGGCGT TCGATATGAAAAAGCCCGTAACAT CGA ATGCTACGGGCTTGGTTTTATCGG TTGTTTCTTATTTCA TERM 433 257180 - 257212 + T 82 -7.7 -4.51847 | opp_overlap 257184, overlap 257171 257168 257184 TGGCGTTCGATATGA AAAAGCCCGTAACAT CGA ATGCTACGGGCTTGG TTTTATCGGTTGTTT TERM 434 257184 - 257208 + T 95 -12.9 -3.76789 | opp_overlap 257184, overlap 257180 257171 257168 GTTCGATATGAAAAA GCCCGTAACAT CGA ATGCTACGGGC TTGGTTTTATCGGTT TERM 435 257208 - 257184 - T 100 -15.1 -4.8048 | opp_overlap 257184 257180 257171 257168 GTTCGATATGAAAAA GCCCGTAACAT CGA ATGCTACGGGC TTGGTTTTATCGGTT APJL_0241 257603 - 257229 - | putative lipoprotein APJL_0242 257931 - 257623 - | hypothetical protein APJL_0243 258034 - 258360 + | hypothetical protein TERM 436 259397 - 259422 + G 74 -7.7 -4.0098 | gap 1 CTTTATTACACCACG TTTATGCG-GCG TTA CGTGCGCATAAA TTATTTGAATTAAAC TERM 437 261169 - 261154 - g 73 -5.4 -4.64992 | overlap 261156 GGCAAAAAATACAAA CACTGC CACG GCAGTA AAGCAAGATATGCGT secA 258469 - 261186 + | preprotein translocase subunit SecA TERM 438 261196 - 261244 + F 100 -14.1 -5.18371 | opp_overlap 261225 GCGTAATTAGTCTAA GCGGTCGTTTTTTCTGAATTTTT GCA AAATTTTCTGAAAAAATGACCGC TTTTCTTTTATGAGG APJL_0245 261316 - 262503 + | TPR repeat-containing protein mutT1 262500 - 262898 + | mutator MutT protein TERM 439 262927 - 262906 - f 80 -8.8 -3.82528 | opp_overlap 262906, overlap 262902 AAGTTTAAAAATGAA CGGCATTT TATTAG AAATGCCG TTTTTTATGTCATAA TERM 440 262906 - 262927 + F 100 -9.5 -5.39721 | opp_overlap 262906 262902 AAGTTTAAAAATGAA CGGCATTTT ATTA GAAATGCCG TTTTTTATGTCATAA TERM 441 263038 - 263052 + F 81 -4.3 -5.35365 | opp_overlap 263038, overlap 263050 ACTTTTGATTAATTA TTCAC TTTAT GTGAA TTTTTATTCTGTTTT argC 263133 - 264086 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 264107 - 264961 + | acetylglutamate kinase argD2 264975 - 266156 + | acetylornithine aminotransferase TERM 442 266241 - 266215 - f 100 -13.8 -3.45768 | opp_overlap 266215, overlap 266205 TTTAAGACGAACGAA TCCCCTTAAGTG AAT CACTTAGGGGGA TTTTTTTATTATGTT TERM 443 266215 - 266241 + F 100 -16 -5.94214 | opp_overlap 266215 266205 TTTAAGACGAACGAA TCCCCTTAAGTG AAT CACTTAGGGGGA TTTTTTTATTATGTT TERM 444 266397 - 266385 - g 78 -4.1 -5.10029 | overlap 266375 ATGAATGTGAAAAAA TCACA AAT TGCGA TAGTAATAGCCGCAA TERM 445 267225 - 267209 - g 74 -9.5 -3.29649 | ACGCTACGATATTAA TGCCAAA TTA TTTGGCA ACCGTTTCCGCGGTA tbpB2 266370 - 268079 + | transferrin-binding protein 2 precursor TERM 446 268204 - 268180 - T 70 -5.7 -4.42238 | TTATGCGAAGCAAAA TGAAACGGAAT TAG ATACCGTTACA GTCAAAGCAAAAACG TERM 447 268230 - 268218 - T 76 -4.7 -5.00138 | CAGTCAAAGCAAAAA CGGAG ATA CACCG CCGACAAAACGAAGT TERM 448 268685 - 268663 - T 75 -5.7 -4.7373 | opp_overlap 268663 268670 GTATTCGAGTAAAAA TAAGCAATT TAGCG AATCGCTTA GTTTTGCAGGTCGTT TERM 449 268878 - 268865 - T 70 -8.1 -3.36273 | GTCTTTGAAGACGAA TGCCC GATC GGGCA AGGAAGTAATCCCGG TERM 450 269789 - 269779 - T 73 -3.2 -5.08255 | ATTGGTAAAAGAAAA GCAA TAG TCGC TCATAATAATTATTG TERM 451 270925 - 270900 - T 100 -14.9 -3.70636 | opp_overlap 270900, overlap 270904 AAGGAATAGATATAA TAAAGGCACTC AACA GAGTGCCTTTA TTTTTTATGAACGTT TERM 452 270900 - 270925 + T 100 -14.9 -5.25803 | opp_overlap 270900 270904 AAGGAATAGATATAA TAAAGGCACTC AACA GAGTGCCTTTA TTTTTTATGAACGTT TERM 453 270921 - 270904 - T 95 -11.3 -4.45484 | opp_overlap 270900, overlap 270900 AATAGATATAATAAA GGCACTC AACA GAGTGCC TTTATTTTTTATGAA rho 272192 - 270930 - | transcription termination factor Rho TERM 454 272314 - 272298 - R 74 -8.1 -3.76411 | GCAAAATCATCCAAA TTGCAAA TTC TTTGCAA AAATAGACCGCTTAC TERM 455 272350 - 272368 + r 73 -7.4 -4.07568 | opp_overlap 272350 TTTCTAAACGAAAAA TGCCGG CGTTATA CCGGCA TTTTAAAGAAAGAAG TERM 456 272368 - 272350 - R 95 -8.1 -4.98531 | opp_overlap 272350 TTTCTAAACGAAAAA TGCCGGC GTTAT ACCGGCA TTTTAAAGAAAGAAG cysK 273340 - 272390 - | cysteine synthase TERM 457 273526 - 273488 - R 100 -21.3 -5.2422 | opp_overlap 273488 AATCACACTAAAAAA GCGGTCGGATTTTACAA TTTTT TTGCAAAATCCGACCGC TTGTATAGGCTAAAT TERM 458 273488 - 273526 + r 100 -19.1 -3.50572 | opp_overlap 273488 AATCACACTAAAAAA GCGGTCGGATTTTACAA TTTTT TTGCAAAATCCGACCGC TTGTATAGGCTAAAT thrB 274502 - 273552 - | homoserine kinase TERM 459 274956 - 274969 + H 81 -3.8 -5.46706 | TCATCACGCGGATCC GGCT CGGTAA AGCC TTTTTCTTTTGCGAT TERM 460 275191 - 275218 + H 73 -5.6 -4.57581 | opp_overlap 275198, overlap 275193 275196 CTTCACGTAATTCTT GGTAATATCGGT AACT ACCGGTATTGGC TTTCTTGTTTGGGGT TERM 461 276249 - 276230 - H 73 -5.8 -4.44046 | gap 1, overlap 276246 TTGATTCTAAACAAA TCGCTTCAG GCA CT-AAGCGA GGGTCACAAGTATAA TERM 462 277026 - 277011 - H 100 -10.4 -5.71712 | opp_overlap 277011 277019 TTGGATATAAAAAAA CCCGCT TGCT AGCGGG TTCCGTTTGTTTCTT TERM 463 277011 - 277026 + H 80 -10.4 -3.44318 | opp_overlap 277011, overlap 277019 TTGGATATAAAAAAA CCCGCT TGCT AGCGGG TTCCGTTTGTTTCTT TERM 464 277258 - 277270 + H 88 -4.9 -5.72207 | opp_overlap 277258 AGTTTTATCAAGCGA TAGAA AAA TTCTA TTTTTTTGATTTAGA sodA 277366 - 278007 + | manganese superoxide dismutase TERM 465 278085 - 278042 - T 100 -14.8 -4.25681 | opp_overlap 278045, overlap 278045 ATCTAAGCGAATAAA TAAGCGGTCGTTTTTGCAAA TTTT CTTGTAAAAACGACCGCTTT TTATATGAATTATTC TERM 466 278045 - 278082 + T 100 -18 -5.00642 | opp_overlap 278045 278042 TAAGCGAATAAATAA GCGGTCGTTTTTGCAA ATTTTC TTGTAAAAACGACCGC TTTTTATATGAATTA TERM 467 278082 - 278045 - T 100 -16.5 -4.2416 | opp_overlap 278045, overlap 278042 TAAGCGAATAAATAA GCGGTCGTTTTTGCAAA TTTT CTTGTAAAAACGACCGC TTTTTATATGAATTA TERM 468 278126 - 278112 - T 90 -8.6 -4.66163 | opp_overlap 278112 278111 ATTCGTATTCAAAAA TTACCC GTG GGGTAA GTTTGGTAATCAATT alr 279219 - 278095 - | alanine racemase TERM 469 278593 - 278577 - G 77 -6.5 -4.66537 | opp_overlap 278584, overlap 278579 GTTTCCAATATAAAA TACCGCT CGA AGCGGAA ATACTGCGTTCGTGT TERM 470 278591 - 278579 - G 80 -9.1 -3.94773 | opp_overlap 278584, overlap 278577 TTCCAATATAAAATA CCGCT CGA AGCGG AAATACTGCGTTCGT TERM 471 278625 - 278645 + g 75 -5.4 -4.89966 | opp_overlap 278621 278618 TAGGATAAGGAGAGG TCGCCG CTTCAAATA CGGCGA TTTGTTTTTCGGTAT TERM 472 278739 - 278757 + g 77 -6.1 -4.61231 | GACAGGCCTTTAAGC GTTGATA GAACA TATCAAC TTTTTCGGGATGTAC TERM 473 278868 - 278886 + g 75 -8.9 -3.62522 | overlap 278883 CTTTTTGTTGTTCTT GTTGCCA TTCTT TGGCAAC TTGTTCGAGAAGTTC TERM 474 278999 - 279011 + g 86 -9.1 -4.29326 | ATTAATAAAATCTTG CCGGT GTA ACCGG TTTCTTGAATTTCGA TERM 475 279625 - 279608 - g 74 -4 -5.03747 | opp_overlap 279611, overlap 279609 AAATTTTGCAAAAAA TCGGCG GAATCA CGCCGC TTGAATGGCAGGACG TERM 476 279877 - 279866 - g 74 -4.4 -5.07107 | overlap 279868 TAAATTGGCAAAAAA TAGC GGTC GCTA CGGCTATCAAACAAA TERM 477 280255 - 280240 - g 71 -4.8 -4.74103 | TTCTTAATGGAAAAA TTAATG GCGG CATTAA AACCGAATACCCGAT recD 279340 - 281259 + | exodeoxyribonuclease V, alpha subunit TERM 478 281383 - 281428 + T 81 -2.6 -5.72254 | gap 1, overlap 281386 ATAATGCATCCCACA CAACGACGCACTGTTGTGAAC GAGAA GTAAATG-CAGTGCGTCGTTC TTTTTTGTTCTTTAA TERM 479 281386 - 281425 + T 71 -4.3 -4.86954 | gap 1, overlap 281383 ATGCATCCCACACAA CGACGCACTGTTGTGAAC GAGAA GTAAATG-CAGTGCGTCG TTCTTTTTTGTTCTT TERM 480 283131 - 283148 + T 70 -9.1 -3.07291 | opp_overlap 283131 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT TERM 481 283236 - 283224 - T 82 -7.7 -4.52347 | GAAAGAAGACGAAAA CGGAT ATA ATCCG GCATCCTTTTGGGTC TERM 482 284958 - 284944 - T 73 -5.7 -4.58213 | TAAGTAACGATAAAA CGAGT GAAAA ACTCG TTCGCCGGAAGACCA TERM 483 286662 - 286636 - T 76 -2.2 -5.57729 | AAAGAAGACAAAAAA CGAAAAAATCAG TGA CGGCTTGTTTCG AATTTAAACCGAATT TERM 484 286822 - 286847 + T 100 -10.5 -5.25735 | opp_overlap 286822 GAGAGACGAAGGGAA CCCTGTGGTTA GCGA TAACTACGGGG TTTTTGCTTTTTTAC TERM 485 287094 - 287131 + T 88 -5.6 -5.58074 | opp_overlap 287095 287101, overlap 287095 287101 AGAAATAAGATAGAA AGAAAAACGGCTAGAA GTAAAA TTCTAGCCGTTCTGCA TTTTTTTAGTAATTA TERM 486 287095 - 287130 + T 80 -9.1 -3.93218 | opp_overlap 287095 287101, overlap 287094 287101 GAAATAAGATAGAAA GAAAAACGGCTAGAA GTAAAA TTCTAGCCGTTCTGC ATTTTTTTAGTAATT TERM 487 287130 - 287095 - T 90 -11.3 -4.30477 | opp_overlap 287095 287094 287101, overlap 287101 GAAATAAGATAGAAA GAAAAACGGCTAGAA GTAAAA TTCTAGCCGTTCTGC ATTTTTTTAGTAATT TERM 488 287124 - 287101 - T 100 -11.1 -5.4433 | opp_overlap 287095 287094 287101, overlap 287095 AGATAGAAAGAAAAA CGGCTAGAA GTAAAA TTCTAGCCG TTCTGCATTTTTTTA TERM 489 287101 - 287124 + T 84 -11.1 -3.6185 | opp_overlap 287101 287095, overlap 287095 287094 AGATAGAAAGAAAAA CGGCTAGAA GTAAAA TTCTAGCCG TTCTGCATTTTTTTA pepD 288721 - 287144 - | aminoacyl-histidine dipeptidase TERM 490 288266 - 288241 - G 73 -8.9 -3.54902 | opp_overlap 288256 288257, overlap 288237 288242 CTAGGCAAGAAGCAA GCCCGATGCCG TTAT CGGCACCGAGA GTCGTGCCTTTGGCT TERM 491 288265 - 288242 - G 88 -12.4 -2.72459 | opp_overlap 288256 288257, overlap 288241 288237 TAGGCAAGAAGCAAG CCCGATGCCG TTAT CGGCACCGAG AGTCGTGCCTTTGGC TERM 492 288731 - 288748 + H 90 -2.6 -6.02914 | overlap 288732 ACGCAATTTTTTTAT TCGGTG CCTTGA CACCGC TTTTTTTTATCTAGG gpt 288771 - 289244 + | xanthine-guanine phosphoribosyltransferase TERM 493 289256 - 289286 + F 86 -9.9 -4.21462 | opp_overlap 289256, overlap 289284 GTAATTCGTGAATAA TGGAGAACTGATT AAAAA AATTGGTTCTCCA TTTTCAATGGTAACT gmk 289328 - 289948 + | guanylate kinase TERM 494 290829 - 290845 + G 74 -6.6 -4.28656 | GAATCAAGCGTTACC TACTCG TTATC CGAGTA TTTTAGGTGTTAAAT TERM 495 290987 - 290975 - g 82 -3.3 -5.47159 | CCGCAACAGAAAAAA GTTGG TTC CCGAC AGTTACGCTTGGCGG TERM 496 291303 - 291291 - g 70 -2.7 -4.94902 | TAACTATTATAAAAA TCGTT ATG AACAA GGCGTATCCGAGTTC APJL_0265 290050 - 291444 + | outer membrane protein TERM 497 291463 - 291484 + T 100 -9.5 -5.38348 | opp_overlap 291463 TGCGCTAACAAAAAA GCACGAAAT AAAA GTTTCGTGC TTTTTTACTATTTTT TERM 498 291484 - 291463 - T 100 -8.8 -5.4505 | opp_overlap 291463 TGCGCTAACAAAAAA GCACGAAA TAAAAG TTTCGTGC TTTTTTACTATTTTT APJL_0266 291788 - 291492 - | hypothetical protein APJL_0267 292215 - 291781 - | hypothetical protein modC 293318 - 292263 - | molybdate transporter ATP-binding protein modB 294011 - 293322 - | molybdate ABC transporter permease protein TERM 499 294060 - 294040 - R 72 -4 -4.95547 | overlap 294035 TTGATAAGAAGAAAA GGAATAAC TTTTG GCTATCCC TTTTGTAAGATTAAT modA 294829 - 294071 - | molybdate-binding periplasmic protein, ABC transporter APJL_0271 295686 - 294925 - | ABC-2 type transport system permease protein TERM 500 295160 - 295137 - G 82 -4.5 -5.28755 | AAATAGAGTAAAAAA CACCGCCTA AATAAG TGAGCGGTG TAAGTACGAAAGTCG APJL_0272 296598 - 295690 - | ABC-2 type transport system ATP-binding protein TERM 501 295873 - 295884 + g 85 -2.2 -5.76949 | TTTTATTTCAAGCGG TTGG TTTT CCGA TTTTTTTTGCAAATC dnaX 298664 - 296598 - | DNA polymerase III subunits gamma and tau TERM 502 298312 - 298322 + g 71 -6.8 -4.20025 | opp_overlap 298309, overlap 298309 TAAACTTTAAAGCGT CCGA CGG TCGG TTTGTATTGAACGTT apt 299261 - 298713 - | adenine phosphoribosyltransferase TERM 503 299047 - 299022 - G 71 -6.9 -4.24075 | gap 1, overlap 299039 ACGCACTAATACAAA CGGTA-CGCCTA ATG CAAGCGCTACCG GTGCGCCGAAGATAA TERM 504 299757 - 299743 - g 70 -5.7 -4.2558 | opp_overlap 299743 GATTTTTGACCAAAA CCAAC AGCTG GTTGG TGCTTTATGTATCAA APJL_0275 299462 - 300094 + | two-component response regulator involved in C4-dicarboxylate transport APJL_0278 300467 - 301561 + | threonine synthase APJL_0279 301576 - 302067 + | hypothetical protein TERM 505 302163 - 302143 - T 88 -5.4 -5.69023 | opp_overlap 302143 AAAATACGAAAAAAA GACCGC TTGTTTTTG GCGGTC TTTATCAATCTAATC yfeB 302933 - 302178 - | iron (chelated) transporter, ATP-binding protein TERM 506 302899 - 302865 - G 100 -13 -3.51365 | opp_overlap 302866, overlap 302866 302872 GGATACGTCATATAA GGCTAAATGCCCGTTA TTA TAACGGACACTTAGCT TTTCAACGGAAATAG TERM 507 302898 - 302866 - G 100 -16.5 -2.70498 | opp_overlap 302866, overlap 302865 302872 GATACGTCATATAAG GCTAAATGCCCGTTA TTA TAACGGACACTTAGC TTTTCAACGGAAATA TERM 508 302866 - 302898 + g 100 -12.1 -4.07885 | opp_overlap 302866 302865 302872 GATACGTCATATAAG GCTAAATGCCCGTTA TTA TAACGGACACTTAGC TTTTCAACGGAAATA TERM 509 302892 - 302872 - G 82 -10.5 -3.70811 | opp_overlap 302866, overlap 302866 302865 TCATATAAGGCTAAA TGCCCGTTA TTA TAACGGACA CTTAGCTTTTCAACG TERM 510 303303 - 303330 + r 78 -6.2 -4.82678 | overlap 303307 CCGGAATAACGGATA GCCGTTGGCGTA ACGG TTCGCCAATTGC TTTTACTTTTTCTGC APJL_0283 304252 - 303899 - | putative sulfite reductase TERM 511 304263 - 304246 - G 100 -11.3 -5.42975 | opp_overlap 304246 GCATATAAATAAAAA GTGCCAC GGAC GTGGCAC TTACTCTCAAATTTG TERM 512 304246 - 304263 + g 86 -11.3 -3.28708 | opp_overlap 304246 GCATATAAATAAAAA GTGCCAC GGAC GTGGCAC TTACTCTCAAATTTG APJL_0284 304951 - 304286 - | transport protein pgsA 305133 - 305684 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 513 305709 - 305725 + F 100 -10.9 -5.64274 | opp_overlap 305701 305709 ACCGAAACGATATAA GCGAGAT AAT ATCTCGC TTTTTTTATGCGTAA TERM 514 305725 - 305709 - f 88 -10.9 -3.65112 | opp_overlap 305709, overlap 305701 ACCGAAACGATATAA GCGAGAT AAT ATCTCGC TTTTTTTATGCGTAA TERM 515 307011 - 307001 - g 71 -6.8 -4.15044 | CTTGCCGGTAATAAA TCGG TAT CCGA TAAAAGATTAAATCC TERM 516 307036 - 307024 - g 76 -7.7 -4.10958 | opp_overlap 307024 307020 CGATAAAAGATTAAA TCCGA GTT TCGGA TTGATTTGGGACATT TERM 517 307567 - 307554 - g 71 -4.5 -4.58303 | gap 1, overlap 307555 307556 CTAAAGAGTATAAAA CGGGCG CTG CGC-CG AAAGTCGAAACGAGA frpB 305804 - 307774 + | iron-regulated outer membrane protein TERM 518 307804 - 307823 + F 100 -10 -5.38054 | opp_overlap 307804 AATAATTTTGCAAAA GCGGTTGT TTTT ACGACCGC TTTTTGTTTATGCAC TERM 519 307823 - 307804 - f 76 -7.8 -4.12599 | opp_overlap 307804 AATAATTTTGCAAAA GCGGTTGT TTTT ACGACCGC TTTTTGTTTATGCAC uvrC 307927 - 309759 + | excinuclease ABC subunit C TERM 520 309807 - 309764 - f 100 -21.4 -2.56273 | opp_overlap 309767, overlap 309767 AGCATAGCTAAGTGA CAAGCGGTCGAATTTACA GCATTTTT TGTAAATTCGACCGCTTG TAAATAGAGATGAGA TERM 521 309804 - 309767 - f 100 -17.3 -3.43117 | opp_overlap 309767, overlap 309764 ATAGCTAAGTGACAA GCGGTCGAATTTACA GCATTTTT TGTAAATTCGACCGC TTGTAAATAGAGATG TERM 522 309767 - 309804 + F 100 -18 -3.35996 | opp_overlap 309767 309764 ATAGCTAAGTGACAA GCGGTCGAATTTACAG CATTTT TTGTAAATTCGACCGC TTGTAAATAGAGATG APJL_0288 309828 - 310580 + | TatD family deoxyribonuclease rep 312735 - 310717 - | ATP-dependent DNA helicase potA 313069 - 314184 + | putrescine/spermidine ABC transporter ATPase protein TERM 523 314391 - 314407 + G 75 -3 -5.23644 | gap 1, opp_overlap 314391 GGAACTCGTTTAAAA TGTCTGC GATT GC-GACA TTTTTCTGTTTAATT potB 314171 - 315037 + | spermidine/putrescine ABC transporter membrane protein potC 315037 - 315804 + | spermidine/putrescine ABC transporter membrane protein TERM 524 315817 - 315838 + F 100 -8.7 -5.40072 | opp_overlap 315817 315819, overlap 315819 TAATTTGATTAAAAA TGGCTCGCT GATT AGCGGGCTA TTTTTTTGCAAAAAA TERM 525 315838 - 315817 - f 71 -4.3 -4.74801 | opp_overlap 315817 315819, overlap 315819 TAATTTGATTAAAAA TGGCTCGCT GATT AGCGGGCTA TTTTTTTGCAAAAAA TERM 526 315819 - 315836 + F 83 -9.1 -4.34482 | opp_overlap 315817 315819, overlap 315817 ATTTGATTAAAAATG GCTCGCT GATT AGCGGGC TATTTTTTTGCAAAA TERM 527 316186 - 316174 - f 78 -7.7 -4.30978 | GTGAATTGATTAAAA CCAAC GGT GTTGG GCCTAAATTAGCCCT TERM 528 316993 - 317027 + G 81 -9.2 -3.8647 | TGATCGGTGAAGGGC CGGCGGCACGTTCGAT TAA GTTGGACTTGCCTCCG TTTACTCTAGTCGGT ruvB 316686 - 317570 + | Holliday junction DNA helicase B TERM 529 317574 - 317617 + T 89 -11.3 -3.89334 | opp_overlap 317572 317574, overlap 317577 AAATTAGATTAAATA CAAGCGGTTGTTTTTGT AAGATTTTAG GCAAAAATAACCGCTTG TTTCCTATACTATTT TERM 530 317617 - 317574 - T 72 -8.4 -3.53452 | opp_overlap 317574 317577, overlap 317572 AAATTAGATTAAATA CAAGCGGTTGTTTTTG TAAGATTTTAGG CAAAAATAACCGCTTG TTTCCTATACTATTT TERM 531 317577 - 317614 + T 73 -7.2 -4.05877 | opp_overlap 317574 317572, overlap 317574 TTAGATTAAATACAA GCGGTTGTTTTTGT AAGATTTTAG GCAAAAATAACCGC TTGTTTCCTATACTA ubiG 318364 - 317627 - | 3-demethylubiquinone-9 3-methyltransferase TERM 532 318462 - 318482 + H 70 -5.4 -4.42806 | overlap 318464 AATCGAATGAATTTT TCGCCCTA ATGGA TAGGGCTA TTTCTTTAAACGTGA TERM 533 318464 - 318480 + H 72 -8 -3.81958 | overlap 318462 TCGAATGAATTTTTC GCCCTA ATGGA TAGGGC TATTTCTTTAAACGT TERM 534 319637 - 319624 - g 70 -8.1 -3.57561 | TTTGAATTGCGTAAA GCACG TGAA CGTGC GCATATCTTAGAAGG TERM 535 320242 - 320232 - g 78 -5.4 -4.99568 | overlap 320227 320220 TAAGATGAAAGAAAA CGAT TTC ATCG AGAAATTATTAATAG gyrA 318511 - 321201 + | DNA gyrase subunit A TERM 536 321266 - 321227 - f 100 -16.6 -3.96449 | opp_overlap 321227, overlap 321215 321247 TAAGACCCTAAATAA GCGGTCGGATTTTGGTAA AATT TTGCGAAAATCCGACCGC TTTTGATTATAAGCA TERM 537 321227 - 321266 + F 100 -18.8 -4.48987 | opp_overlap 321215 321227 321247 TAAGACCCTAAATAA GCGGTCGGATTTTGGTAA AATT TTGCGAAAATCCGACCGC TTTTGATTATAAGCA hsdM2 321238 - 322851 + | putative type I restriction-modification systemmethyltransferase subunit TERM 538 323067 - 323034 - g 73 -8.3 -3.71527 | gap 1, opp_overlap 323035, overlap 323036 323037 GGGGAATTAGTTAAA GATTCAGTTGTTGCAA ATT TTGCAACAACTGC-CC TTGATGGAAAAACCT TERM 539 323066 - 323036 - g 78 -9.8 -3.43853 | opp_overlap 323035, overlap 323034 323037 GGAATTAGTTAAAGA TTCAGTTGTTGCAA ATT TTGCAACAACTGCC CTTGATGGAAAAACC TERM 540 323065 - 323037 - g 93 -13.3 -2.6583 | opp_overlap 323035, overlap 323036 323034 GAATTAGTTAAAGAT TCAGTTGTTGCAA ATT TTGCAACAACTGC CCTTGATGGAAAAAC APJL_0299 322848 - 323849 + | hypothetical protein TERM 541 323971 - 323951 - f 77 -9.8 -3.17392 | opp_overlap 323951, overlap 323966 GAGGGCGGAATTGAA CTGTACGA AAAAA TCGTACAG TTTGCTGTCCTTCAA TERM 542 323951 - 323971 + F 85 -9.8 -3.889 | opp_overlap 323951 323966 GAGGGCGGAATTGAA CTGTACGA AAAAA TCGTACAG TTTGCTGTCCTTCAA TERM 543 323981 - 324015 + F 100 -13.8 -4.26019 | opp_overlap 323990, overlap 323982 GTACAGTTTGCTGTC CTTCAACTAGGGTATA ATT TGTACCCTAGTTGAAA TTTTAGATATGCTTG TERM 544 323982 - 324014 + F 100 -17.3 -3.14888 | opp_overlap 323990, overlap 323981 TACAGTTTGCTGTCC TTCAACTAGGGTATA ATT TGTACCCTAGTTGAA ATTTTAGATATGCTT APJL_0300 324067 - 324363 + | hypothetical protein APJL_0301 324400 - 324978 + | hypothetical protein TERM 545 325542 - 325528 - g 75 -7.2 -4.35926 | ATGGGAAATCCAAAA TTGATG AGC CATCAA ATGGAAAAAATCAGA APJL_0302 325144 - 326313 + | putative type I restriction enzyme specificity protein APJL_0303 326325 - 327440 + | anticodon nuclease TERM 546 329554 - 329566 + G 75 -5.5 -4.91109 | ACTTGCGTTATCACG GCTTG ATG CAGGC TTTTTCTCGTACGAA TERM 547 329610 - 329624 + G 75 -8.6 -3.8901 | opp_overlap 329599, overlap 329594 GCAACCAAAACATTT GGTAAC ATT GTTACC TTTCGTGATTTGGAG TERM 548 330531 - 330518 - g 81 -5.3 -5.19328 | opp_overlap 330518 330519 ACGTCATAAGAAAAA GGAAA CGGT TTTCC AAAAAATTGTTTCAT hsdR 327447 - 330584 + | type I site-specific deoxyribonuclease uup 330603 - 332546 + | ABC transporter ATPase component TERM 549 333233 - 333258 + G 70 -7.5 -3.8374 | overlap 333252 TGCGCAAACGGTTTC GGTGCGGTAAC GATG GTAACCGCAAC TTTCGGCTTTTTTGC APJL_0306 332546 - 333310 + | hypothetical protein TERM 550 333376 - 333344 - T 100 -17.3 -4.10453 | opp_overlap 333349, overlap 333349 TAAAGTTTTGGAAAA TAAAAGCCTCTGAAA AAT CTTCAGAGGCTTTTA TATAAATGAATATTA TERM 551 333349 - 333371 + T 100 -12.1 -4.55287 | opp_overlap 333344 333349 TTTTGGAAAATAAAA GCCTCTGAA AAATC TTCAGAGGC TTTTATATAAATGAA TERM 552 333371 - 333349 - T 100 -12.8 -5.07652 | opp_overlap 333349, overlap 333344 TTTTGGAAAATAAAA GCCTCTGAAA AAT CTTCAGAGGC TTTTATATAAATGAA APJL_0307 333721 - 333389 - | hypothetical protein cydA 334178 - 335728 + | cytochrome D ubiquinol oxidase, subunit I cydB 335742 - 336878 + | cytochrome D ubiquinol oxidase, subunit II APJL_0310 336891 - 336989 + | hypothetical protein TERM 553 337053 - 337029 - g 86 -10.1 -3.9093 | opp_overlap 337029 337033, overlap 337033 TCTATGACATAACAA GAAAGGGCT GGTTAAA AGCCCTTTC TTTCATATTGGCTTG TERM 554 337029 - 337053 + G 86 -10.1 -3.94853 | opp_overlap 337029 337033, overlap 337033 TCTATGACATAACAA GAAAGGGCT GGTTAAA AGCCCTTTC TTTCATATTGGCTTG TERM 555 337049 - 337033 - g 70 -5.1 -4.55093 | opp_overlap 337029 337033, overlap 337029 TGACATAACAAGAAA GGGCT GGTTAAA AGCCC TTTCTTTCATATTGG TERM 556 337033 - 337049 + G 70 -5.1 -4.56883 | opp_overlap 337033 337029, overlap 337029 TGACATAACAAGAAA GGGCT GGTTAAA AGCCC TTTCTTTCATATTGG APJL_0311 337001 - 337303 + | hypothetical protein TERM 557 337284 - 337318 + F 71 -5.1 -4.6313 | opp_overlap 337294, overlap 337292 TATATTTAATTTCTT TACGATTATATGGGC AATAA GCCCATATTATTCTA TTATTTTCTTTTCAA TERM 558 337292 - 337310 + F 81 -8.9 -4.07533 | opp_overlap 337294, overlap 337284 ATTTCTTTACGATTA TATGGGC AATAA GCCCATA TTATTCTATTATTTT TERM 559 337396 - 337412 + F 100 -8.7 -5.0925 | opp_overlap 337396 ATAGTCTGCAATTTA CGCCTAA TTT TTGGGCG TTTTTCATTTTGGCG APJL_0312 337446 - 337835 + | hypothetical protein tolQ 337870 - 338550 + | colicin transport protein TERM 560 338577 - 338598 + F 78 -9.5 -3.49653 | opp_overlap 338577 338574 338579 GAGTAATCATAAGTA GATCCGAAT ATAT GTTCGGATC TTATATCCCACTAAT tolR 338629 - 339069 + | colicin uptake protein TolR tolA1 339085 - 340356 + | colicin import membrane protein TERM 561 340895 - 340879 - g 71 -2.3 -5.20333 | CATTCAGAACAAAAA TTGCA TATGTAG TGCAA CGTGGTGTATCATCA tolB 340374 - 341654 + | colicin tolerance protein pal 341681 - 342139 + | peptidoglycan-associated outer membrane lipoprotein TERM 562 342166 - 342191 + F 100 -12.7 -4.55295 | opp_overlap 342166 342170, overlap 342170 TTACTGAATAGACAA TGAAGCCCTGA TTTT TCAGGGCTTTA TTTCTTTATAAGCGG TERM 563 342191 - 342166 - f 86 -10.5 -3.69482 | opp_overlap 342166 342170, overlap 342170 TTACTGAATAGACAA TGAAGCCCTGA TTTT TCAGGGCTTTA TTTCTTTATAAGCGG TERM 564 342170 - 342187 + F 100 -11.3 -4.83246 | opp_overlap 342166 342170, overlap 342166 TGAATAGACAATGAA GCCCTGA TTTT TCAGGGC TTTATTTCTTTATAA TERM 565 342187 - 342170 - f 84 -11.3 -3.54503 | opp_overlap 342170 342166, overlap 342166 TGAATAGACAATGAA GCCCTGA TTTT TCAGGGC TTTATTTCTTTATAA APJL_0318 342269 - 343123 + | putative permease TERM 566 343757 - 343768 + G 70 -3.6 -4.83615 | opp_overlap 343756, overlap 343756 343744 GGCGGCGCAACAATT CCGT TCCG GCGG TTTTTATCAACAATC djlA 343203 - 344063 + | Dna-J like membrane chaperone protein TERM 567 344074 - 344120 + F 90 -8.8 -4.66609 | opp_overlap 344073 344098, overlap 344078 AATAATAAAAACATC TCAAGCGGTCGTTTTTGGTAAA AAT TTTGCAAAAATCGACCGCTTAC TTTTTGAATCGAATA TERM 568 344078 - 344116 + F 100 -14 -3.83042 | opp_overlap 344073 344098, overlap 344074 ATAAAAACATCTCAA GCGGTCGTTTTTGGTAAA AAT TTTGCAAAAATCGACCGC TTACTTTTTGAATCG APJL_0320 344148 - 345110 + | putative nitrogen regulator protein APJL_0321 345162 - 346208 + | hypothetical protein TERM 569 346260 - 346303 + T 100 -22.1 -3.98804 | opp_overlap 346260 346263, overlap 346263 GTATGGAAATGAAAA TAAGCGGTAGGATTTGCAA AAAAAG TTGCAAATCCTACCGCTTG TTATTTGGAATTTCC TERM 570 346303 - 346260 - T 100 -19.9 -4.56914 | opp_overlap 346260 346263, overlap 346263 GTATGGAAATGAAAA TAAGCGGTAGGATTTGCAA AAAAAG TTGCAAATCCTACCGCTTG TTATTTGGAATTTCC TERM 571 346300 - 346263 - T 100 -21.6 -4.38472 | opp_overlap 346263 346260, overlap 346260 TGGAAATGAAAATAA GCGGTAGGATTTGCAA AAAAAG TTGCAAATCCTACCGC TTGTTATTTGGAATT TERM 572 346263 - 346300 + T 100 -21.6 -4.1023 | opp_overlap 346260 346263, overlap 346260 TGGAAATGAAAATAA GCGGTAGGATTTGCAA AAAAAG TTGCAAATCCTACCGC TTGTTATTTGGAATT TERM 573 346346 - 346368 + T 72 -8.4 -3.55444 | opp_overlap 346351, overlap 346347 GCTGCATTCTGCTTA ACCTAGTACG GAT CGTGCTAGGA TTTCGGAAATACGCC TERM 574 346347 - 346367 + T 83 -11.9 -2.73124 | opp_overlap 346351, overlap 346346 CTGCATTCTGCTTAA CCTAGTACG GAT CGTGCTAGG ATTTCGGAAATACGC APJL_0322 348312 - 346396 - | ABC transporter ATP-binding protein TERM 575 346729 - 346744 + g 71 -4 -4.84642 | gap 1 ATTTCCTGAATTTTT TGCAGCT TCC AGC-GCA TTTTGTTCGTTTAGC APJL_0323 348473 - 348715 + | hypothetical protein TERM 576 348863 - 348848 - f 90 -10.4 -4.26589 | opp_overlap 348842 348848 ATTAGATATTTAAAA GGGCGT ATTT ACGCCC TTTATCGTTTTATAC TERM 577 348848 - 348863 + F 90 -10.4 -4.2408 | opp_overlap 348848, overlap 348842 ATTAGATATTTAAAA GGGCGT ATTT ACGCCC TTTATCGTTTTATAC TERM 578 349117 - 349141 + F 74 -10.1 -2.70354 | overlap 349115 349115 TCGAGCGTTTAATCG TTGCCGGTAAA TCG TTTGCCGGTAA TCCGTTTATCGGCGA TERM 579 349576 - 349594 + F 73 -8.8 -3.34517 | overlap 349574 TTGGATTTTGGTATT CTACCGGA TGA TCCGGCAG TGTTTGAACAAACAT moeB 350149 - 350895 + | molybdopterin biosynthesis protein MoeB TERM 580 351158 - 351178 + T 100 -13.3 -5.29742 | opp_overlap 351156 351155 GAACAAAAGAATTTG CCCCGTAGG TTT TCTACGGGG TTTCTTTTTTTCTAT rumA 352620 - 351292 - | 23S rRNA 5-methyluridine methyltransferase TERM 581 352584 - 352596 + g 73 -5.5 -4.59773 | CCGATTTTTTTGCGT GCTGT TTT GCAGC TTTTTCAGAGTAGAA TERM 582 352689 - 352703 + G 70 -2.8 -5.02074 | opp_overlap 352702, overlap 352690 AAAGATGATTTCGAA TGTTTG GAC CGAACG TTTTTTGGCGGATAA dgt 352678 - 354003 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 583 354049 - 354068 + F 95 -10.8 -4.68908 | TTGTTTATTCGATAG CCGCTTTA TTTA TAAAGCGG TTTCTTTTCGCTGAA TERM 584 354834 - 354846 + G 71 -4.9 -4.63107 | overlap 354813 354842 TGAAATGTTACGTCG TTTCA ACT TGAAA TTTTCATTATTTGAT TERM 585 356820 - 356804 - g 73 -3.7 -4.91429 | overlap 356794 AAATGGCAAATAAAA TTGCG AAAATGG CGCAA GCGGATATTAAAAAA hepA 354175 - 357084 + | ATP-dependent helicase HepA TERM 586 357733 - 357782 + G 72 -6.5 -4.35044 | overlap 357736 TTAGGGCATCCGATT CTCGGCGATAAATTTTATGCTAG TCCG TTAGCTAAAAGTTTATCGCCTCG TTTGTGTTTGCATGC TERM 587 357736 - 357779 + G 79 -11.2 -3.15228 | overlap 357733 GGGCATCCGATTCTC GGCGATAAATTTTATGCTAG TCCG TTAGCTAAAAGTTTATCGCC TCGTTTGTGTTTGCA rluA 357199 - 357867 + | ribosomal large subunit pseudouridine synthase A TERM 588 358014 - 358036 + T 100 -9.9 -5.24129 | opp_overlap 358013, overlap 358015 TCATTCCTAATATAT TGGCTAGGA TTTAT TCCTAGCCG TTTTTTATGCCAAAC TERM 589 358015 - 358035 + T 88 -11.2 -3.73995 | opp_overlap 358013, overlap 358014 CATTCCTAATATATT GGCTAGGA TTTAT TCCTAGCC GTTTTTTATGCCAAA ampD 358611 - 358063 - | N-acetyl-anhydromuranmyl-L-alanine amidase APJL_0332 358751 - 359593 + | hypothetical protein TERM 590 359772 - 359792 + G 82 -7.6 -4.49556 | opp_overlap 359759 359772 ATCAGGCAGAAAAAG CCCGTATT TCTTT AATGCGGG TTTATTTAATACCGG pryE 359680 - 360321 + | orotate phosphoribosyltransferase APJL_0334 360460 - 361548 + | cobalamin-independent methionine synthase II TERM 591 361608 - 361573 - T 78 -10.7 -3.01745 | opp_overlap 361578, overlap 361578 GTCTGAATAACGAGA TAAAAGTGAATTAGG TGCAAC CCTAATTCACTTTTT TGTTACTTAAGCGAA TERM 592 361603 - 361578 - T 95 -10.6 -4.6391 | opp_overlap 361578, overlap 361573 AATAACGAGATAAAA GTGAATTAGG TGCAAC CCTAATTCAC TTTTTTGTTACTTAA TERM 593 361578 - 361603 + T 100 -10.6 -5.5604 | opp_overlap 361578 361573 AATAACGAGATAAAA GTGAATTAGG TGCAAC CCTAATTCAC TTTTTTGTTACTTAA metC1 362815 - 361625 - | cystathionine beta-lyase TERM 594 361701 - 361717 + g 70 -2.9 -4.94058 | overlap 361702 CCGACGTGAATACGG ATCAGTG TGC CGCTGAG TTTTCTTTCGATTGC TERM 595 362883 - 362844 - R 100 -14.4 -5.29782 | opp_overlap 362835 362844 TATAGTTATAAAAAA GCGGTCGGATTTCAGCAA AATT TTGCAAAAATTCGACCGC TTGTAAGATTATCTG TERM 596 362844 - 362883 + r 100 -14.4 -3.39005 | opp_overlap 362844, overlap 362835 TATAGTTATAAAAAA GCGGTCGGATTTCAGCAA AATT TTGCAAAAATTCGACCGC TTGTAAGATTATCTG dsbB 363431 - 362892 - | disulfide bond formation protein B TERM 597 363364 - 363344 - G 91 -8.3 -4.68908 | overlap 363346 CGTATTGAAAATAAA TGGCACTTG CTT CAAGTGCGA AAGCAACAAAAGCAA TERM 598 363362 - 363346 - G 76 -10.9 -2.6365 | overlap 363344 TATTGAAAATAAATG GCACTTG CTT CAAGTGC GAAAGCAACAAAAGC TERM 599 363497 - 363517 + r 79 -8.3 -4.03167 | opp_overlap 363497 GGTTTTCGTAAAAAA TCTCCCC ACTTTTA GGGGAGA TTCTTTGAATTATCG TERM 600 363517 - 363497 - R 95 -8.3 -5.00616 | opp_overlap 363497 GGTTTTCGTAAAAAA TCTCCCC ACTTTTA GGGGAGA TTCTTTGAATTATCG nhaB 365068 - 363527 - | sodium/proton antiporter TERM 601 364503 - 364515 + g 77 -3.5 -5.2189 | TGTTCGAGAATTTCT TTATT CGT AATAA TTTTTTCGTCATTAC TERM 602 365484 - 365474 - g 71 -8.2 -3.5393 | ATGACGTGTGGGAAA CGGC AGG GCCG AATATAATCAGCACG fadR 365233 - 365961 + | fatty acid metabolism regulator TERM 603 366340 - 366321 - g 79 -7.8 -4.27062 | TCAATTAAAACGAAA CGCGGTGT AATT AAACCGCG TGGAGAACATCAACA TERM 604 366557 - 366519 - g 73 -5.4 -4.58283 | opp_overlap 366507, overlap 366522 GAAGCGGGTGAAAAA TTAGGTTTTTTACCCG GTGATCT CGGGCAAAAAATCGAA CCCTATTTAAGACCG APJL_0339 365970 - 367040 + | PhoH-like ATP-binding protein TERM 605 367045 - 367078 + T 95 -12.6 -3.48924 | opp_overlap 367052, overlap 367052 AACAACTTTAAAATT GAAAAAAGCAGCGT TTTTAT ACGCTGCTTTTTAC TTATATCCAACCTAA TERM 606 367052 - 367071 + T 100 -9.3 -4.96646 | opp_overlap 367052, overlap 367045 TTAAAATTGAAAAAA GCAGCGT TTTTAT ACGCTGC TTTTTACTTATATCC TERM 607 367071 - 367052 - T 100 -9.3 -5.2696 | opp_overlap 367045 367052 TTAAAATTGAAAAAA GCAGCGT TTTTAT ACGCTGC TTTTTACTTATATCC APJL_0340 368056 - 367079 - | hypothetical protein TERM 608 367349 - 367362 + g 70 -8.1 -3.60475 | opp_overlap 367345 CGCATAAAGCACCAC GCGAG TGAG CTCGC TTTCCGCCGTTTGTT TERM 609 367868 - 367878 + g 79 -6.8 -4.60924 | opp_overlap 367868, overlap 367857 AAGATCTTTGGAATA GTCC AAC GGAC TTTTTACCACATTTA TERM 610 367982 - 367967 - G 74 -7.6 -3.91897 | GTCGTCATCCACAAA TTTGCG ACGG CGCAAA AAAATCCCTAATAAC TERM 611 368123 - 368079 - R 100 -13.9 -5.14563 | opp_overlap 368079 368082, overlap 368082 CTCCCGAGTAAAAAA TAAGCGGTCAAATTTGCAAAA TTT TTTTACAAATTCAACCGCTTG TAATTAAAGCCCCGC TERM 612 368079 - 368123 + r 72 -9.5 -2.70932 | opp_overlap 368079 368082, overlap 368082 CTCCCGAGTAAAAAA TAAGCGGTCAAATTTGCAAAA TTT TTTTACAAATTCAACCGCTTG TAATTAAAGCCCCGC TERM 613 368082 - 368120 + r 75 -9 -3.50853 | opp_overlap 368082 368079, overlap 368079 CCGAGTAAAAAATAA GCGGTCAAATTTGCAAAA TTT TTTTACAAATTCAACCGC TTGTAATTAAAGCCC TERM 614 368120 - 368082 - R 100 -15.6 -4.67552 | opp_overlap 368079 368082, overlap 368079 CCGAGTAAAAAATAA GCGGTCAAATTTGCAAAA TTT TTTTACAAATTCAACCGC TTGTAATTAAAGCCC prfB 369032 - 368127 - | peptide chain release factor 2 APJL_0342 369225 - 369148 - | hypothetical protein TERM 615 370210 - 370190 - g 88 -9.8 -4.15044 | GCCGGGCGGAACAAA CCGTAACT TTGAC AGTTACGG GCATCTAATTTCAGC selD 369438 - 370409 + | selenide, water dikinase ymfB 370414 - 370869 + | putative Nudix hydrolase ymfB TERM 616 371976 - 372002 + G 100 -12.4 -3.74238 | overlap 371968 ACTGTTTTCTTGCGA TTTCTTACCGCT ACA AGCGGTCAGAAA TTTAGGCTTATTTGC ubiH 370879 - 372078 + | UbiH protein (2-octaprenyl-6-methoxyphenol) TERM 617 372108 - 372082 - T 76 -9.5 -3.3761 | opp_overlap 372087, overlap 372087 GGTTGGCAATAAAAT TAAAAGGACGC ACTGG GCGTCCTTTTT TATAGTTGATATTTT TERM 618 372087 - 372103 + T 100 -9.4 -5.38249 | opp_overlap 372087 372082 GCAATAAAATTAAAA GGACGC ACTGG GCGTCC TTTTTTATAGTTGAT TERM 619 372103 - 372087 - T 100 -9.4 -4.78029 | opp_overlap 372087, overlap 372082 GCAATAAAATTAAAA GGACGC ACTGG GCGTCC TTTTTTATAGTTGAT APJL_0346 372584 - 372108 - | hypothetical protein TERM 620 372630 - 372611 - R 100 -10 -4.9792 | TATTGGAGATAAAAA CGGCTAGA AAAT CCTAGCCG CCAAGTTATACTATT APJL_0347 373396 - 372641 - | putative lipoprotein TERM 621 373425 - 373448 + r 91 -9.7 -4.57063 | opp_overlap 373425 TATGATGTGGAAAAA GGTTAGAAC CTTTCC GTTCTAACC TTTGTTATATTTTAA TERM 622 373448 - 373425 - R 91 -9.7 -4.60487 | opp_overlap 373425 TATGATGTGGAAAAA GGTTAGAAC CTTTCC GTTCTAACC TTTGTTATATTTTAA hlpB 373956 - 373477 - | lipoprotein HlpB visC 375237 - 374092 - | monoxygenase APJL_0350 376222 - 375362 - | hypothetical protein ptsN1 376768 - 376241 - | PTS system, nitrogen regulatory IIA-like protein APJL_0352 377528 - 376803 - | ABC transporter ATP-binding protein TERM 623 376958 - 376976 + g 70 -6 -4.27584 | opp_overlap 376958 TGTGATCGGTAATGA GAACGC CTAATCC GCGTTC TTTTAAATTCACGAT APJL_0353 378041 - 377538 - | hypothetical protein TERM 624 377789 - 377813 + g 71 -2.2 -5.09173 | gap 2 GTTGGAAAGTGACCG GAGAACCGCTTG CTT CGAG-GG-TCTC TTTTTTGCCCTCTTG APJL_0354 378662 - 378066 - | hypothetical protein TERM 625 378241 - 378271 + g 71 -2 -5.24129 | opp_overlap 378248, overlap 378248 GAAATATCTTGCGTA TTTAAATCGATA CGAAGTT TATCGGTTTCAA TTTTTTGTAAACGCG TERM 626 378771 - 378801 + r 100 -11.9 -5.25656 | opp_overlap 378771 AAACTTTCAGTGAAA TCAGACCGCTTGC TTAAC GTAAGCGGTCCGA TTTTTTCGTAATTTT TERM 627 378801 - 378771 - R 93 -11.9 -3.66095 | opp_overlap 378771 AAACTTTCAGTGAAA TCAGACCGCTTGC TTAAC GTAAGCGGTCCGA TTTTTTCGTAATTTT ppc 381461 - 378822 - | phosphoenolpyruvate carboxylase TERM 628 381602 - 381657 + r 100 -19.6 -3.36492 | gap 1, opp_overlap 381602 381605 381651, overlap 381605 TTTTAAATAAAAAAA TAAGCGGTTAAATTTTGG-AAGTTTTT TGC AAAGACTTTCCGAAATTTAACCGCTTG TTATCGGCTTAAAAG TERM 629 381657 - 381602 - R 100 -13 -5.95539 | gap 1, opp_overlap 381602 381605, overlap 381605 381651 TTTTAAATAAAAAAA TAAGCGGTTAAATTTTGGAA-GTTTTT TGC AAAGACTTTCCGAAATTTAACCGCTTG TTATCGGCTTAAAAG TERM 630 381654 - 381605 - R 100 -14.7 -5.01858 | gap 1, opp_overlap 381602 381605, overlap 381602 381651 TAAATAAAAAAATAA GCGGTTAAATTTTGGAA-GTTTTT TGC AAAGACTTTCCGAAATTTAACCGC TTGTTATCGGCTTAA TERM 631 381605 - 381654 + r 100 -19.1 -3.82191 | gap 1, opp_overlap 381605 381602 381651, overlap 381602 TAAATAAAAAAATAA GCGGTTAAATTTTGG-AAGTTTTT TGC AAAGACTTTCCGAAATTTAACCGC TTGTTATCGGCTTAA APJL_0356 382479 - 381676 - | beta-propeller domain-containing protein APJL_0357 382925 - 382476 - | hypothetical protein TERM 632 382895 - 382862 - G 75 -9 -3.71649 | gap 1, opp_overlap 382862 GTTCTAAATGTGAAA TTGCCTGTTCGATTC GTTGA GTATCGA-CAGGCAA TTTGTTCGAAAGAAA TERM 633 382862 - 382895 + g 83 -9 -4.15044 | gap 1, opp_overlap 382862 GTTCTAAATGTGAAA TTGCCTGTTCGATTC GTTGA GTATCGA-CAGGCAA TTTGTTCGAAAGAAA TERM 634 382983 - 382940 - R 90 -12.7 -3.21416 | gap 1, opp_overlap 382948 382949, overlap 382949 382951 TAGCGTTACCACTAA CACGGAAAACACGGAA-GAT TTCCG ATCATTCCGTGCTTTTCGTG GTAAGAGATTAATTA TERM 635 382974 - 382949 - R 75 -7 -4.29325 | gap 1, opp_overlap 382948 382949, overlap 382940 382951 CACTAACACGGAAAA CACGGAA-GAT TTCCG ATCATTCCGTG CTTTTCGTGGTAAGA TERM 636 382963 - 382951 - R 72 -7.7 -3.741 | opp_overlap 382949 382948, overlap 382949 382940 CTAACACGGAAAACA CGGAA GAT TTCCG ATCATTCCGTGCTTT lemA 383576 - 382992 - | LemA protein TERM 637 383180 - 383210 + g 93 -9 -4.41494 | CCGTACCTTCTAATT GCGCTTGAAGATTT AAG AAACCTTCGTGCGC TTTTAATTCAGGGTA TERM 638 383709 - 383692 - R 100 -11.3 -5.626 | opp_overlap 383692 TATTGGAGAAAAAAA CGGAGCT AAAA AGCTCCG TTTTTTTATCATCAA TERM 639 383692 - 383709 + r 100 -11.3 -5.67063 | opp_overlap 383692 TATTGGAGAAAAAAA CGGAGCT AAAA AGCTCCG TTTTTTTATCATCAA fruA 385391 - 383730 - | phosphotransferase system, fructose-specific IIC component TERM 640 383855 - 383845 - G 91 -8.2 -4.62622 | opp_overlap 383845 GGAATCACAAATAAA CCGC CGT GCGG TGCTTGAAGCGTAAT fruK 386420 - 385473 - | 1-phosphofructokinase ptsN2 387943 - 386435 - | bifunctional fructose-specific PTS IIA/HPr protein TERM 641 386724 - 386773 + g 100 -15.9 -3.29461 | overlap 386725 CCTTCCACCGTAGGC TCGGAAGCGGTCGGATTTGCAAA ATTT TTTGCAGATTCAACCGCTTGCGG TTGTGCCGCACCTTC TERM 642 386725 - 386772 + g 100 -17.2 -2.57463 | overlap 386724 CTTCCACCGTAGGCT CGGAAGCGGTCGGATTTGCAAA ATTT TTTGCAGATTCAACCGCTTGCG GTTGTGCCGCACCTT TERM 643 388054 - 388038 - H 81 -3.7 -5.47399 | opp_overlap 388040, overlap 388040 GCAAGCCGAAAAAAA TATCACA AAG TGTGATC TGGTTCGCATATCTC TERM 644 388052 - 388040 - H 73 -6.3 -4.36993 | opp_overlap 388040, overlap 388038 AAGCCGAAAAAAATA TCACA AAG TGTGA TCTGGTTCGCATATC glgB 388204 - 390537 + | glycogen branching enzyme TERM 645 391357 - 391335 - g 86 -11.3 -3.29263 | opp_overlap 391332 AGATTTGGTTTATAA CCATACCGC AGAGG GCGGTACGG ACAGTTTAACGCTAT glgX 390544 - 392529 + | glycogen operon protein TERM 646 392591 - 392611 + G 71 -6.9 -4.17762 | opp_overlap 392594, overlap 392592 392594 AATCTGGTCTCGATA TTACTAACG ATA CGTTAGTAC TTATTTTAGCGGGTG TERM 647 392592 - 392610 + G 77 -10.4 -3.10175 | opp_overlap 392594, overlap 392591 392594 ATCTGGTCTCGATAT TACTAACG ATA CGTTAGTA CTTATTTTAGCGGGT TERM 648 392774 - 392750 - g 70 -3.6 -4.77157 | gap 1, overlap 392733 392751 CCAATTTATTAAAAA TCGGCGTGATT ACGC AAT-ACGCCGC ACACTCGTTACTTCG glgC 392545 - 393861 + | glucose-1-phosphate adenylyltransferase TERM 649 393873 - 393905 + F 75 -5.6 -4.83615 | gap 2, overlap 393879 TTAATTAATCTGTTT AGCC--GAGGACGCAC ATT GTGCGTCCTTTAGGCG TTTTTATAAGCGGTC TERM 650 393879 - 393897 + F 100 -14.6 -3.69455 | overlap 393873 AATCTGTTTAGCCGA GGACGCAC ATT GTGCGTCC TTTAGGCGTTTTTAT TERM 651 394127 - 394115 - g 74 -4.1 -5.01732 | AAGTGGCGGAAAAAA TTGGC GAA ACCAA TGAAGTGGCGACCAT glgA 393991 - 395400 + | glycogen synthase TERM 652 395859 - 395883 + G 73 -10.1 -3.01712 | overlap 395861 ATTCCGGCGATCGGT TACGGTATTCG TTA CGAATACGGTA TGTTCCGCCAAGAAA TERM 653 397159 - 397148 - g 82 -5.8 -5.0538 | CCGTATCTTAAAAAA TCCG AATG CGGA TTGGACGCCTCGTGT TERM 654 397481 - 397497 + G 71 -6.7 -4.21194 | TCTTGATTGTGTCGG TAAAGAT AAT ATCTTTA TTTTCGGTAATACGG APJL_0366 395430 - 397934 + | glucan phosphorylase TERM 655 397946 - 397985 + T 95 -13 -3.52896 | opp_overlap 397941 397946 ATAGCAGAAATTTAA GCGGTCTGTTTTTCGTAA GATT TTGCAAGAAACGGACCGC TTGTATAAGTGATAA TERM 656 397985 - 397946 - T 73 -8.6 -3.34856 | opp_overlap 397946, overlap 397941 ATAGCAGAAATTTAA GCGGTCTGTTTTTCGTAA GATT TTGCAAGAAACGGACCGC TTGTATAAGTGATAA TERM 657 398027 - 398005 - T 100 -9.2 -5.3236 | opp_overlap 398005 ATAAGTGATAAAAAA GCCGTTTG TGTAAGG CAAACGGC TTTCTTTTTAGCTAT TERM 658 398005 - 398027 + T 100 -9.9 -4.89966 | opp_overlap 398005 ATAAGTGATAAAAAA GCCGTTTGT GTAAG GCAAACGGC TTTCTTTTTAGCTAT ndk 398462 - 398046 - | nucleoside diphosphate kinase TERM 659 398486 - 398504 + r 90 -7.4 -5.22312 | opp_overlap 398487, overlap 398487 CTTGTTCGCAAAAAA AGCGGTAA TTT TTACCGCC TTTTTTACTATAGCT TERM 660 398487 - 398503 + r 88 -10.9 -3.72302 | opp_overlap 398487, overlap 398486 TTGTTCGCAAAAAAA GCGGTAA TTT TTACCGC CTTTTTTACTATAGC TERM 661 398503 - 398487 - R 100 -10.9 -5.40072 | opp_overlap 398487 398486 TTGTTCGCAAAAAAA GCGGTAA TTT TTACCGC CTTTTTTACTATAGC metG 400569 - 398521 - | methionyl-tRNA synthetase TERM 662 400621 - 400597 - H 100 -8.6 -5.09426 | TGCAATCGGAAAAAA TCCCCCTTTT GTGTA AAGAGGGGGA ATAGGAAATTTAAAA TERM 663 401141 - 401127 - g 75 -5.6 -4.67038 | overlap 401128 TCGGCAAAATCAAAA TCGGCT TCG AGCCGG AAAAGGAAGGCGAGT TERM 664 401140 - 401128 - g 71 -9.1 -3.395 | overlap 401127 CGGCAAAATCAAAAT CGGCT TCG AGCCG GAAAAGGAAGGCGAG TERM 665 401195 - 401217 + G 100 -8.4 -4.8622 | overlap 401196 TTCCCACATCTTACC TTGCGTTTGG ATG CCAATCGCAG TTTTTCGTTGGCGCA TERM 666 401196 - 401216 + G 78 -9.7 -3.5125 | overlap 401195 TCCCACATCTTACCT TGCGTTTGG ATG CCAATCGCA GTTTTTCGTTGGCGC menC 400736 - 401698 + | O-succinylbenzoate synthase APJL_0370 401895 - 401734 - | hypothetical protein rsuA 402012 - 402704 + | ribosomal small subunit pseudouridine synthase A TERM 667 402872 - 402887 + G 71 -3.2 -5.00616 | overlap 402873 GTTTTTACCTTCGGT TTTGCC GTAG GGCAAC TTTTTTGGGGACCGA proP 402704 - 403900 + | bicyclomycin/multidrug efflux system TERM 668 403947 - 403914 - T 78 -6.7 -4.66609 | opp_overlap 403921, overlap 403916 403921 GATTTTATGTAAAAA CGGAAAAGCGGACAC TTAA GTGTCCGCTTTTTTT ACCAACAGGCATAAC TERM 669 403945 - 403916 - T 93 -13.7 -2.63208 | opp_overlap 403921, overlap 403914 403921 TTTTATGTAAAAACG GAAAAGCGGACAC TTAA GTGTCCGCTTTTT TTACCAACAGGCATA TERM 670 403940 - 403921 - T 100 -13.6 -4.4874 | opp_overlap 403921, overlap 403916 403914 TGTAAAAACGGAAAA GCGGACAC TTAA GTGTCCGC TTTTTTTACCAACAG TERM 671 403921 - 403940 + T 100 -13.6 -5.40072 | opp_overlap 403921 403916 403914 TGTAAAAACGGAAAA GCGGACAC TTAA GTGTCCGC TTTTTTTACCAACAG APJL_0373 404332 - 403946 - | hypothetical protein TERM 672 404104 - 404119 + g 89 -6.8 -5.38958 | opp_overlap 404104 CTTTTTTCTGATAAC GCTGAG TAAA CTCGGC TTTTTCTTTCTCGGT TERM 673 404392 - 404358 - R 95 -10.9 -4.57073 | opp_overlap 404345 404341 404362 TATTGCGCTTAAAAA TTAAGCGCTCTGAGT TTATC ACTCAAAGAGCTTAA ATCAATAGTATTATT APJL_0374 404972 - 404403 - | component of anaerobic dehydrogenase nfo 405030 - 405872 + | endonuclease IV nlpC 405993 - 406589 + | lipoprotein NlpC TERM 674 406631 - 406607 - T 86 -10.1 -4.3467 | opp_overlap 406607 ACGTTTATATGAAAA GTCGTCAAAGA GGC TATTTGACGAC TTTTTTCTATGCCGC TERM 675 406607 - 406631 + T 100 -10.1 -5.36441 | opp_overlap 406607 ACGTTTATATGAAAA GTCGTCAAAGA GGC TATTTGACGAC TTTTTTCTATGCCGC APJL_0377 407093 - 406638 - | SOS-response transcriptional repressors/RecA-mediated autopeptidase APJL_0378 407116 - 407241 + | hypothetical protein TERM 676 407294 - 407267 - T 100 -14.4 -3.61709 | opp_overlap 407274, overlap 407274 GTAAAACAGAAGCAA TAAAAAAGCACC CGAA GGTGCTTTTTTA AGAAAATGAACAGTA TERM 677 407287 - 407274 - T 100 -8.1 -5.57396 | opp_overlap 407274, overlap 407267 AGAAGCAATAAAAAA GCACC CGAA GGTGC TTTTTTAAGAAAATG TERM 678 407274 - 407287 + T 95 -8.1 -5.0133 | opp_overlap 407274 407267 AGAAGCAATAAAAAA GCACC CGAA GGTGC TTTTTTAAGAAAATG APJL_0379 407705 - 407319 - | autonomous glycyl radical cofactor GrcA ung 407911 - 408588 + | uracil-DNA glycosylase TERM 679 408655 - 408605 - T 100 -13.8 -3.34787 | gap 1, opp_overlap 408618, overlap 408607 408608 408618 AACAGTATTGCATAA TAT-TTACGTAAAAGACCAATCT AATAAA AGATTGGTCTTTTACGTAAGAGA AATAAATTTGTCTAG TERM 680 408652 - 408607 - T 100 -18 -3.23869 | opp_overlap 408618, overlap 408605 408608 408618 CAGTATTGCATAATA TTTACGTAAAAGACCAATCT AATAAA AGATTGGTCTTTTACGTAAG AGAAATAAATTTGTC TERM 681 408651 - 408608 - T 100 -21.5 -2.54 | opp_overlap 408618, overlap 408607 408605 408618 AGTATTGCATAATAT TTACGTAAAAGACCAATCT AATAAA AGATTGGTCTTTTACGTAA GAGAAATAAATTTGT TERM 682 408641 - 408618 - T 86 -9.7 -4.20932 | opp_overlap 408618, overlap 408608 408607 408605 AATATTTACGTAAAA GACCAATCT AATAAA AGATTGGTC TTTTACGTAAGAGAA TERM 683 408618 - 408641 + T 86 -9.7 -4.18018 | opp_overlap 408618 408608 408607 408605 AATATTTACGTAAAA GACCAATCT AATAAA AGATTGGTC TTTTACGTAAGAGAA APJL_0381 409558 - 408686 - | hypothetical protein TERM 684 409629 - 409605 - R 74 -9.3 -3.10935 | opp_overlap 409605 409604, overlap 409603 409612 AGTTAAAAGGATATA GGCACAAGC AAAGCAA GCCTGTGCC ACTTTTAGGTTTGGA APJL_0382 412451 - 409653 - | serotype-specific antigen 1 precursor TERM 685 409928 - 409954 + g 86 -11.8 -2.98072 | overlap 409922 409932 ATTTAACGGTGTATT TTAATTTCACAC TCG GTGTGAGATTAA TATCGTTATAGTGAA TERM 686 410154 - 410166 + g 74 -7.7 -3.91882 | CTGAGATTTTTTGTA CCAAC GGC GTTGG TTGTATTTCTGCTGC TERM 687 410750 - 410769 + g 71 -2.1 -5.21236 | AATAGAGATCTTGCA TTAAGCC TTTATT GGCTAAA TTTTTATTATCAATT hrpA 416502 - 412603 - | ATP-dependent RNA helicase HrpA TERM 688 413990 - 414006 + g 73 -5.2 -4.62471 | ACCGTATTGGCGTTT TCATTC ATTAA GAATGA TTTTTCAAAGTTGAG TERM 689 414143 - 414156 + g 71 -6.7 -4.19624 | opp_overlap 414141 414143 TCGTCCACTAAAATA TCTCG GCGG CGAGA TTTGTGTTCGAGGTC TERM 690 414387 - 414399 + g 71 -4.7 -4.70169 | opp_overlap 414380, overlap 414381 TCGACCAATGCGGTT CGCTG TAA CTGCG TTTTATTAAATGTCC TERM 691 414551 - 414578 + g 75 -3.4 -5.15381 | gap 1, overlap 414554 GGGAACACATAAAAA TGCGCATTTCTCG CCC CGAGGTA-GTGCA TTTTTTCGCTGTCTT TERM 692 415259 - 415238 - G 83 -8.7 -4.08216 | GGACGTGCGTTAAAA TCCTCCTCT GAAT AGAGGCGGA TACAAATCCCTTCGC APJL_0384 417090 - 416638 - | hypothetical protein grpE 417883 - 417287 - | heat shock protein TERM 693 418210 - 418199 - g 70 -3.6 -4.78572 | overlap 418206 418207 GTGTAATGAAGAAAA GCCA AAAG CGGC TGAAGCAGCGGCTCA TERM 694 418222 - 418206 - g 82 -7.9 -4.4836 | overlap 418199 418207 GAAGAAAAGCCAAAA GCGGCTG AAG CAGCGGC TCAACCGGCAGCAGC TERM 695 419105 - 419084 - g 70 -7.3 -3.77413 | overlap 419082 AACATTACCAAAAGA GATTACCGA AGAT CCGGCAATC TATCCGACAGCTGAT potD2 418128 - 419210 + | spermidine/putrescine-binding periplasmic protein TERM 696 419257 - 419232 - f 93 -11.9 -3.97636 | opp_overlap 419232 AGCCTAACGGATAAA GCCCTCGAGAA GCGA TTTTCGAGGGC TTTTCGTTTTTACAA TERM 697 419232 - 419257 + F 100 -14.1 -4.77757 | opp_overlap 419232 AGCCTAACGGATAAA GCCCTCGAGAA GCGA TTTTCGAGGGC TTTTCGTTTTTACAA norM 419354 - 420745 + | multidrug resistance protein recB 420761 - 424369 + | exodeoxyribonuclease V, beta subunit TERM 698 424429 - 424397 - T 95 -10.9 -4.67904 | opp_overlap 424397 424401, overlap 424401 CATTAAGCTGAAAAA TAAAGCACTAAAA TAATAAG TTTTAGTGCTTTA TTTTTTAAACAAGCG TERM 699 424397 - 424429 + T 100 -11.6 -5.00616 | opp_overlap 424397 424401, overlap 424401 CATTAAGCTGAAAAA TAAAGCACTAAAAT AATAA GTTTTAGTGCTTTA TTTTTTAAACAAGCG TERM 700 424401 - 424425 + T 89 -8 -5.04249 | opp_overlap 424397 424401, overlap 424397 AAGCTGAAAAATAAA GCACTAAAAT AATAA GTTTTAGTGC TTTATTTTTTAAACA TERM 701 424425 - 424401 - T 83 -7.3 -4.88293 | opp_overlap 424401 424397, overlap 424397 AAGCTGAAAAATAAA GCACTAAAA TAATAAG TTTTAGTGC TTTATTTTTTAAACA lnt 425958 - 424447 - | apolipoprotein N-acyltransferase TERM 702 426026 - 426007 - R 100 -9.3 -5.11389 | opp_overlap 426005 426003 426007 ATAACACAAACAAAA GGTGAGG ATAAAA CCTCACC TATATATTATTCTTC TERM 703 426007 - 426026 + r 75 -9.3 -3.23302 | opp_overlap 426007, overlap 426005 426003 ATAACACAAACAAAA GGTGAGG ATAAAA CCTCACC TATATATTATTCTTC corC 426926 - 426033 - | magnesium and cobalt efflux protein APJL_0391 427096 - 427698 + | hypothetical protein TERM 704 427740 - 427723 - f 84 -9.9 -3.76224 | opp_overlap 427723 TTTTTACGGACTAAA CCTCAAC TTCG GTTGAGG TTTTTTTGTCTGTTT TERM 705 427723 - 427740 + F 100 -9.9 -5.82281 | opp_overlap 427723 TTTTTACGGACTAAA CCTCAAC TTCG GTTGAGG TTTTTTTGTCTGTTT TERM 706 427836 - 427848 + F 70 -3.4 -5.04175 | overlap 427822 GCATTTTTCCGTTTG CGAA AAATG TTCG TTTTTATATAGTTCG TERM 707 428217 - 428237 + G 79 -6.7 -4.65182 | overlap 428221 CCCAATTTTTAGGTG CTTTCGCCG CAG CGGCGTTAG TTTATTTCCTTTATA TERM 708 428221 - 428233 + G 86 -10.5 -3.78394 | overlap 428217 ATTTTTAGGTGCTTT CGCCG CAG CGGCG TTAGTTTATTTCCTT glpF 427934 - 428716 + | glycerol uptake facilitator protein TERM 709 429028 - 429039 + G 72 -7.2 -3.97834 | opp_overlap 429028 TATGGGAAAAAGAAA CCGG TAAA CCGG TTTATAATGCGATTG TERM 710 429039 - 429028 - g 85 -7.2 -4.87389 | opp_overlap 429028 TATGGGAAAAAGAAA CCGG TAAA CCGG TTTATAATGCGATTG TERM 711 429224 - 429213 - g 90 -7.2 -5.0916 | opp_overlap 429218 GGCGCAAGAGAAAAA GCCG AGCG CGGC GAGCTGTTATTCGGT glpK 428751 - 430262 + | glycerol kinase TERM 712 430360 - 430338 - T 100 -15 -5.01422 | opp_overlap 430338 TTATAGAAAAACAAA GGGCTTCAAA TAA TTTGAAGCCC TTTTTACGTTATATT TERM 713 430338 - 430360 + T 100 -15 -4.8066 | opp_overlap 430338 TTATAGAAAAACAAA GGGCTTCAAA TAA TTTGAAGCCC TTTTTACGTTATATT TERM 714 430394 - 430408 + T 76 -2.1 -5.58209 | gap 1, overlap 430394 430395 ACGATTATTGAATCG C-CGCT TTTG AGCGAG TTTTTTTCACTTTAA lon 432791 - 430383 - | ATP-dependent protease LA TERM 715 430790 - 430802 + g 86 -7.7 -4.72986 | CGTCCGGCACGTGTA CGTGA ATA TCACG TTTTTCATAGAAGTC TERM 716 432336 - 432346 + g 78 -5.4 -5.06116 | opp_overlap 432336 TAACTTAGGTAGAAT TTCC GCC GGAA TTTTCTTGTTATTTT TERM 717 432758 - 432770 + g 87 -6.3 -5.20735 | GTAATGGAAGAAGTG GCAAT TCA ATTGC TTTCTTTTTTCTTGG TERM 718 432821 - 432840 + r 73 -5.7 -4.56597 | opp_overlap 432821 TTTTTCTATCAATGA TTAGCCC ATTATG GGGCTGA TTTTTGGAAAAACAA TERM 719 432910 - 432881 - R 100 -14.5 -5.1166 | opp_overlap 432876 432881 GATTAAAATTAAAAA GAGAGGAAATACC GAAT AGTATTTCCTCTC TTAAGTTTTAACGAT TERM 720 432881 - 432910 + r 100 -13.8 -3.37091 | opp_overlap 432881, overlap 432876 GATTAAAATTAAAAA GAGAGGAAATAC CGAATA GTATTTCCTCTC TTAAGTTTTAACGAT glpT 434253 - 432937 - | glycerol 3-phosphate transporter TERM 721 433694 - 433719 + g 73 -8.3 -3.72893 | opp_overlap 433700 CATTTTTCTACCGGC GGTAAACCGCA AGAT TGCGGTGTATC TTTCATCACGAAATA TERM 722 434430 - 434417 - H 80 -6.7 -4.88067 | opp_overlap 434418 434419, overlap 434419 ATTTATTGATAAAAA GTTCG ATTA CGAAC AATCGAGTATATTCT TERM 723 434466 - 434456 - H 86 -5.4 -5.37043 | ATTCTATATAAAAAA GAGT AAT ACTC CATAAAAATTATTCA TERM 724 436015 - 436045 + G 73 -8.3 -3.61922 | gap 1, overlap 436008 436039 GCGGCGCAACGGGAG CCG-GTATTGCGCG AGAT TGCGCATTACGCGG TTTAAAATGCGTATT TERM 725 436102 - 436078 - g 71 -9.3 -3.02739 | opp_overlap 436097 TTGAACGTAGAGACA TTGCAACCGGT GCG ACCGGTCGTAA TCACGGTTTACTACA glpA 435924 - 437609 + | sn-glycerol-3-phosphate dehydrogenase subunit A TERM 726 438688 - 438678 - g 77 -8.2 -4.07133 | TACTTGGACAAATAA CCGC TTT GCGG CACCTCAACCTTATC glpB 437599 - 438885 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B TERM 727 439054 - 439044 - g 71 -6.8 -4.17048 | CCGGGGCCAAAACAA TCCG GTC CGGA CGGCGAGCGTTTACG TERM 728 439661 - 439648 - g 71 -3.1 -5.04987 | AATATCTTGAAAAAA CCGTT AATA AACAG TTGGAAGTGATCGGT glpC 438882 - 440156 + | sn-glycerol-3-phosphate dehydrogenase subunit C APJL_0401 440407 - 440216 - | hypothetical protein TERM 729 440398 - 440373 - G 78 -10.5 -3.29144 | opp_overlap 440373 CTATCTTTTTTACAA GCCTTGAGATC GAAA GATTTCAAGGC TTTTTTCATCATTAG TERM 730 440373 - 440398 + g 100 -12.7 -5.2189 | opp_overlap 440373 CTATCTTTTTTACAA GCCTTGAGATC GAAA GATTTCAAGGC TTTTTTCATCATTAG TERM 731 441453 - 441442 - g 78 -7.2 -4.41817 | overlap 441443 GAAAACAAGCGAAAA CGCC AATC GGCG GCGAAGGTATTCAGC ribD 440466 - 441560 + | riboflavin-specific deaminase ribE 441685 - 442332 + | riboflavin synthase subunit alpha TERM 732 442767 - 442750 - g 75 -9.1 -3.70068 | opp_overlap 442765 GATGATAATGCTAAA GCAACGG ATTT CCGCTGC CCGGGGCATATGTTC ribA 442393 - 443598 + | riboflavin biosynthesis protein ribA TERM 733 443623 - 443643 + F 74 -9.7 -2.63913 | opp_overlap 443628 CCGTATGTAGTATTA GGGAAGCAA GCG TTGCGTCCC TACTATAGAATGATA TERM 734 444039 - 444028 - g 72 -7.2 -3.99324 | opp_overlap 444026 444028 CGGTAGCATTAGAAA CCGG TGTA CCGG TAATTTTCGGTGTAT ribH 443709 - 444170 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 735 444252 - 444290 + F 100 -12.6 -4.64766 | opp_overlap 444253, overlap 444253 AAAAGGTTGGTAAAA AGTGGGTTAAAGCCTTAT AGT ACAAGGCTTTAACCTACC TTTTTGAAATATGAA TERM 736 444289 - 444253 - f 100 -16.1 -4.58685 | opp_overlap 444252 444253 AAAGGTTGGTAAAAA GTGGGTTAAAGCCTTAT AGT ACAAGGCTTTAACCTAC CTTTTTGAAATATGA TERM 737 444253 - 444289 + F 100 -16.1 -3.38378 | opp_overlap 444253, overlap 444252 AAAGGTTGGTAAAAA GTGGGTTAAAGCCTTAT AGT ACAAGGCTTTAACCTAC CTTTTTGAAATATGA TERM 738 444541 - 444529 - g 70 -5.5 -4.45485 | opp_overlap 444529, overlap 444539 ACGATATTTAGAAAA GGCTC CTA AAGCC TTCTTAAAAGCCCCT APJL_0406 444440 - 445228 + | hypothetical protein greA1 445845 - 445357 - | transcription elongation factor GreB APJL_0408 446790 - 445855 - | phosphosugar isomerase pepB 448210 - 446918 - | aminopeptidase B TERM 739 447098 - 447068 - G 77 -3.9 -5.16206 | gap 1 AAAGTAAGATAAAAA GGCGGTTGCC-GTG CTTG CACCGGCACCAACC GGTACTGATCCGATA TERM 740 448298 - 448282 - R 100 -9.4 -5.4492 | opp_overlap 448284 GAGAGATAGAAAAAA GACCGC TTGTG GCGGTC TTCGGAAGTGAATTT ompP4 449140 - 448325 - | lipoprotein E precursor TERM 741 448500 - 448510 + g 79 -3.2 -5.28176 | ACAAAATCACGACGT TCCG CAT TGGA TTTTTTGTAGGTCGC APJL_0411 449313 - 450251 + | Na+-dependent transporter TERM 742 450258 - 450242 - T 95 -8.1 -4.72272 | CGCCTCGATTAAAAA CGAAAAA TAA TTTTTCG GACGATTTAATGTAA TERM 743 450274 - 450320 + T 100 -18.3 -4.30978 | opp_overlap 450275 450278, overlap 450275 GACGATTTAATGTAA ACAAGCGGTGGAAATTTACTA AAATA TTGTAAATTTCCACCGCTTGC TTTTAGTCAATTAGA TERM 744 450319 - 450275 - T 100 -21.8 -3.77219 | opp_overlap 450274 450275, overlap 450278 ACGATTTAATGTAAA CAAGCGGTGGAAATTTACTA AAATA TTGTAAATTTCCACCGCTTG CTTTTAGTCAATTAG TERM 745 450275 - 450319 + T 100 -21.8 -3.18105 | opp_overlap 450275 450278, overlap 450274 ACGATTTAATGTAAA CAAGCGGTGGAAATTTACTA AAATA TTGTAAATTTCCACCGCTTG CTTTTAGTCAATTAG TERM 746 450316 - 450278 - T 100 -17.7 -4.01381 | opp_overlap 450275 450274, overlap 450275 ATTTAATGTAAACAA GCGGTGGAAATTTACTA AAATA TTGTAAATTTCCACCGC TTGCTTTTAGTCAAT acrA1 451512 - 450331 - | membrane-fusion protein TERM 747 451030 - 451066 + g 81 -5.1 -5.12707 | overlap 451051 TTTAATTTGCGCTTT TACGTTATCTACCGTCG CTC TGGCGGAAGCTAAGGTA TTTTTTGCCGTTTCA APJL_0413 452424 - 451609 - | HAD superfamily hydrolase TERM 748 452889 - 452906 + H 100 -8.4 -5.98781 | ACTATCCACACTTTG CCCGCA CATTGA TGCGGG TTTTTTTTACTTATA TERM 749 453006 - 452994 - H 73 -6.3 -4.4017 | opp_overlap 452994 TGAATTCGGATAAAA GTGTT GAG AACAC TTAATGGAGAGCTTA leuA 453021 - 454562 + | 2-isopropylmalate synthase TERM 750 454639 - 454581 - f 89 -10.7 -4.08349 | opp_overlap 454586 454628 454629, overlap 454586 454628 454629 ATTTTAAAAAGATAA GATAAGCGGTCAGATTTGA-TGGAAATTT TGT AAAAATCCAGTAAAATCTGACCGCTT-TC AGTCATTAAATAAGA TERM 751 454586 - 454635 + F 91 -11.7 -3.71794 | gap 1, opp_overlap 454581 454586 454628 454629, overlap 454628 454629 AAAAAGATAAGATAA GCGGTCAGATTTGA-TGGAAATTT TGT AAAAATCCAGTAAAATCTGACCGC TTTCAGTCATTAAAT TERM 752 454635 - 454586 - f 91 -11.7 -3.90967 | gap 1, opp_overlap 454586 454628 454629, overlap 454581 454628 454629 AAAAAGATAAGATAA GCGGTCAGATTTGA-TGGAAATTT TGT AAAAATCCAGTAAAATCTGACCGC TTTCAGTCATTAAAT TERM 753 454817 - 454827 + F 72 -4 -5.06816 | AATTTATTCTTTATA TGAA CTT TTCA TTTTTGTTACACACT TERM 754 455306 - 455289 - g 76 -7 -4.56133 | overlap 455284 TCCGAAGAATTAAAA CGTGTC GTTTTT GACACG ATTGAAAATTTACCT rpoE 454905 - 455483 + | RNA polymerase sigma factor RpoE TERM 755 455568 - 455548 - g 74 -4 -5.05782 | ATGGACGGGAAAAAA GTTGATGA TGCGT TCATCGAC GAGTTATGCGAAAGT rseA 455503 - 456126 + | sigma-E factor negative regulatory protein TERM 756 456239 - 456190 - f 100 -16.2 -4.34737 | gap 1, opp_overlap 456190 CTACTAACGAAGAAA GCGGTAAGATT-TAGCGAATTTT TTGAG AAAATTTGCTACAATCTTACCGC TTTTTTTATTTTTCT TERM 757 456190 - 456239 + F 100 -19.1 -6.23317 | gap 1, opp_overlap 456190 CTACTAACGAAGAAA GCGGTAAGATT-TAGCGAATTTTT TGA GAAAATTTGCTACAATCTTACCGC TTTTTTTATTTTTCT rseC 456354 - 456779 + | sigma-E factor regulatory protein TERM 758 456812 - 456801 - g 75 -3 -5.11613 | opp_overlap 456801 ACAGTATGGAAAAAA TTTG GTTA CAAA ATTATCCTGAAGGCT lcfA 456791 - 458482 + | long-chain-fatty-acid--CoA ligase upp 458549 - 459175 + | uracil phosphoribosyltransferase TERM 759 459214 - 459196 - T 100 -11.8 -6.01725 | opp_overlap 459196 AATAAAAACAAAAAA CCTAAGAG AAT CTCTTAGG TTTTTTTATATCTAT TERM 760 459196 - 459214 + T 100 -11.8 -5.77988 | opp_overlap 459196 AATAAAAACAAAAAA CCTAAGAG AAT CTCTTAGG TTTTTTTATATCTAT TERM 761 459236 - 459273 + T 76 -9.3 -3.36968 | opp_overlap 459236, overlap 459245 TATATCTATGACTAA GCGGTGGAATTTGCAAA ATTT TTTACAAATTTAACCGC TTGTCAGATTAGATA TERM 762 459273 - 459236 - T 75 -9.3 -3.22774 | opp_overlap 459236 459245 TATATCTATGACTAA GCGGTGGAATTTGCAAA ATTT TTTACAAATTTAACCGC TTGTCAGATTAGATA ksgA 460151 - 459282 - | dimethyladenosine transferase TERM 763 460198 - 460176 - R 90 -11.3 -4.20834 | opp_overlap 460179 TTTAAAATAAGCAAA GAACCCCGC AAATA GCGAGGTTC TCAGATAAATCGTTA surA 461167 - 460217 - | survival SurA-like protein pyrR 461787 - 461248 - | pyrimidine regulatory protein PyrR TERM 764 461318 - 461341 + g 73 -3.8 -5.02074 | overlap 461320 GTTCGCACTTGTACT TGTTCCGTTC TTGC GGTCGGAATA TTTTTTCCGACATAA waaE 463233 - 461803 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase TERM 765 462066 - 462078 + g 83 -9.1 -4.17089 | opp_overlap 462057 TTAAATCGTTAATCG GGCGA GAT TCGCC TTTTAAACGTTTCAC TERM 766 463282 - 463254 - R 79 -7.3 -4.41047 | opp_overlap 463252 463257 463272, overlap 463256 463257 ATTTCTCAATTAAAA GATGGCGCTCGTC TGT GACGAGTGCCTTA AATCTTATTTAGATA TERM 767 463280 - 463256 - R 84 -9.9 -3.8125 | opp_overlap 463252 463257 463272, overlap 463254 463257 TTCTCAATTAAAAGA TGGCGCTCGTC TGT GACGAGTGCCT TAAATCTTATTTAGA TERM 768 463279 - 463257 - R 90 -13.4 -2.88268 | opp_overlap 463252 463257 463272, overlap 463256 463254 TCTCAATTAAAAGAT GGCGCTCGTC TGT GACGAGTGCC TTAAATCTTATTTAG TERM 769 463257 - 463279 + r 100 -15.6 -3.2661 | opp_overlap 463257 463256 463254, overlap 463252 463272 TCTCAATTAAAAGAT GGCGCTCGTC TGT GACGAGTGCC TTAAATCTTATTTAG engA 464867 - 463347 - | GTP-binding protein EngA TERM 770 463426 - 463437 + g 70 -7.2 -3.77953 | AGTTTATTTTTCTTA CCCG CAAA CGGG TTATTACCTTCTTGG TERM 771 463674 - 463687 + g 78 -2.3 -5.47159 | TAAAATACGCGTTAA CATCG AAGT CGAAG TTTTTTGTGTTGCAC TERM 772 464522 - 464533 + g 82 -5.8 -5.03314 | overlap 464507 CCGTTTTGTTGGCGA CCAC AACG GTGG TTTTTTCACGCTGAC TERM 773 464961 - 465006 + r 100 -14.9 -4.36372 | opp_overlap 464964, overlap 464964 GAAAAAGGATCAAAA AAAGCGGTCGATTTTCTGCAA AATT TTACCGAAAATCGACCGCTTG TTTATTGAGTTTTTT TERM 774 465003 - 464964 - R 100 -18.8 -5.5943 | opp_overlap 464961 464964 AAAGGATCAAAAAAA GCGGTCGATTTTCTGCAA AATT TTACCGAAAATCGACCGC TTGTTTATTGAGTTT TERM 775 464964 - 465003 + r 100 -16.6 -4.25064 | opp_overlap 464964, overlap 464961 AAAGGATCAAAAAAA GCGGTCGATTTTCTGCAA AATT TTACCGAAAATCGACCGC TTGTTTATTGAGTTT hemA 466335 - 465025 - | glutamyl-tRNA reductase TERM 776 466374 - 466362 - H 100 -9.1 -5.93252 | GCTAAAAACAAAAAA CGGCA AAA TGCCG TTGAAACCGACCTAT TERM 777 468576 - 468552 - H 72 -7.9 -3.75665 | GGAGAGGGTAGTAAA TGCACAATGGG GAA CGCATTATGCA AACGGCTTTAGTTTG TERM 778 468827 - 468870 + H 88 -5.3 -5.49729 | opp_overlap 468827 468830 TATCAAATTAAGTGA CAAGCGGTCGAATTTGTAA AAAAAA TCACAAAAAAGACCGCTTG TTTTTTTGAGTGATT TERM 779 468995 - 468967 - g 100 -13.3 -3.65812 | opp_overlap 468972, overlap 468972 GGTGGTGGAACAGAA CAAAACCGAATAC GAA GTATTCGGTTTGG TCGGCGGTAAAAATG TERM 780 468990 - 468972 - g 100 -11.8 -4.90381 | opp_overlap 468972, overlap 468967 TGGAACAGAACAAAA CCGAATAC GAA GTATTCGG TTTGGTCGGCGGTAA TERM 781 468972 - 468990 + G 93 -11.8 -3.73224 | opp_overlap 468967 468972 TGGAACAGAACAAAA CCGAATAC GAA GTATTCGG TTTGGTCGGCGGTAA dxr 468896 - 470086 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase APJL_0429 470959 - 470171 - | hypothetical protein TERM 782 470858 - 470870 + g 70 -5.5 -4.45485 | opp_overlap 470858, overlap 470847 AGGGGCTTTTAAGAA GGCTT TAG GAGCC TTTTCTAAATATCGT TERM 783 471147 - 471109 - R 100 -12.6 -4.64766 | opp_overlap 471110, overlap 471110 TTCATATTTCAAAAA GGTAGGTTAAAGCCTTGT ACT ATAAGGCTTTAACCCACT TTTTACCAACCTTTT TERM 784 471110 - 471146 + r 100 -16.1 -4.58685 | opp_overlap 471109 471110 TCATATTTCAAAAAG GTAGGTTAAAGCCTTGT ACT ATAAGGCTTTAACCCAC TTTTTACCAACCTTT TERM 785 471146 - 471110 - R 100 -16.1 -3.38378 | opp_overlap 471110, overlap 471109 TCATATTTCAAAAAG GTAGGTTAAAGCCTTGT ACT ATAAGGCTTTAACCCAC TTTTTACCAACCTTT TERM 786 471190 - 471227 + r 100 -15.1 -3.68024 | opp_overlap 471190 CAATTTATAAAAAAA GCGGTGTAATTTGTTAA AAAC TTTGCAAATTACACCGC TTGTCTATTCGGCCG TERM 787 471227 - 471190 - R 100 -12.9 -5.66684 | opp_overlap 471190 CAATTTATAAAAAAA GCGGTGTAATTTGTTAA AAAC TTTGCAAATTACACCGC TTGTCTATTCGGCCG TERM 788 471397 - 471423 + r 73 -7.3 -4.14392 | gap 1 ATTACGAATGGCGTG CATCGCTGGCTT ATCA AAGCC-GCGACG TTTTAAACCTTCCAA fabZ 472529 - 472065 - | (3R)-hydroxymyristoyl-acyl carrier protein dehydratase TERM 789 472585 - 472568 - R 91 -9.9 -4.40882 | overlap 472565 TATAAACTAAAATAA GGCTTAC AGCG GTAAGCC CATAAAAAATGCTTA lpxD 473623 - 472598 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 790 473127 - 473112 - G 74 -7.6 -4.00756 | opp_overlap 473111, overlap 473099 GATTGGATTAAACAA TCCGAA CCGA TTCGGA CGTTATGGTAAACCG TERM 791 473593 - 473551 - G 90 -10.7 -3.92522 | gap 1, opp_overlap 473559 473587, overlap 473553 473554 473559 CGGCAATGCTAGAAA TAGCCAAATCGGCGTTACCC CTTA GAGTACCGCCGATTT-GCTC CGCAAGTTCAATTAA TERM 792 473591 - 473553 - G 100 -13.3 -3.55191 | gap 1, opp_overlap 473559 473587, overlap 473551 473554 473559 GCAATGCTAGAAATA GCCAAATCGGCGTTACCC CTTA GAGTACCGCCGATTT-GC TCCGCAAGTTCAATT TERM 793 473591 - 473554 - G 93 -13.5 -2.72632 | opp_overlap 473559 473587, overlap 473553 473551 473559 CAATGCTAGAAATAG CCAAATCGGCGTTACCC CTTA GAGTACCGCCGATTTGC TCCGCAAGTTCAATT TERM 794 473586 - 473559 - G 100 -12 -3.83324 | opp_overlap 473559, overlap 473553 473554 473551 CTAGAAATAGCCAAA TCGGCGTTACCC CTTA GAGTACCGCCGA TTTGCTCCGCAAGTT TERM 795 473559 - 473586 + g 80 -9.8 -3.73072 | opp_overlap 473559 473553 473554 473551 CTAGAAATAGCCAAA TCGGCGTTACCC CTTA GAGTACCGCCGA TTTGCTCCGCAAGTT APJL_0434 474429 - 473623 - | outer membrane protein TERM 796 474549 - 474525 - R 80 -6.5 -4.84582 | overlap 474516 AAAAAATAGACAAAA TCTAACCGCTT GTT AATCGATTAGA ACGAGCTACCGATAC ompD 476926 - 474545 - | outer membrane protein D-15 TERM 797 474884 - 474916 + g 73 -8.8 -3.53811 | gap 1, opp_overlap 474891, overlap 474887 ATCGCTTGCATTCGT G-AATTTATTACTCT GCGT AGAGTAATAAATTGC TTTAGGACCAATCGC TERM 798 474887 - 474912 + g 83 -10.7 -3.51232 | opp_overlap 474891, overlap 474884 GCTTGCATTCGTGAA TTTATTACTCT GCGT AGAGTAATAAA TTGCTTTAGGACCAA ecfE 478301 - 476988 - | putative zinc metalloprotease TERM 799 477426 - 477452 + g 75 -2.2 -5.27923 | AGGCTCGTAGCTCGG GACGATACCGAT AAA ATAGCGATCGTC TTTTTTATCCGGTTG TERM 800 477925 - 477935 + g 79 -8.2 -4.15006 | TCCGGTAAAATCTGT CCGG TAA CCGG TTTTAGAGTCGGTAT cdsA 479177 - 478308 - | phosphatidate cytidylyltransferase TERM 801 478483 - 478469 - G 75 -8.6 -3.76373 | CGCCTAATACGGAAA TCGCAA CCG TTGCGA CGGAAACTAAAATAA uppS 479915 - 479202 - | undecaprenyl pyrophosphate synthetase TERM 802 479615 - 479634 + g 82 -6.6 -4.86033 | opp_overlap 479618 CACTCTTATTACCGA TAATATTC AAAC GAATATTA TTTTTATGCAGCTTT gloB 480795 - 480088 - | hydroxyacylglutathione hydrolase TERM 803 480841 - 480816 - R 100 -12.7 -4.96848 | opp_overlap 480819 480821 TTTCCTATATAAAAA GAATACACGGG AAGT CCCATGTATTC GGTAAAAACAAATTA APJL_0440 481771 - 480854 - | N-acetyl-D-glucosamine kinase pgpB 482511 - 481774 - | phosphatidylglycerophosphatase B TERM 804 482086 - 482102 + g 95 -8 -5.00616 | opp_overlap 482084 482086 482085, overlap 482084 TGATACGATAAAATC CGCATC ATTCG GATGCG TTTTTTCCGCAAGGG TERM 805 482549 - 482533 - R 76 -4.4 -5.24129 | gap 1, overlap 482535 TTTCCTCATAAAAAA GACCGCT TACA AGCGG-C AAGATTTGAATAAAA TERM 806 482548 - 482535 - R 81 -8.1 -4.25873 | overlap 482533 TCCTCATAAAAAAGA CCGCT TACA AGCGG CAAGATTTGAATAAA APJL_0442 482887 - 482570 - | putative RNA-binding protein APJL_0443 483009 - 483767 + | putative glycosyltransferase TERM 807 483823 - 483790 - T 100 -11.2 -5.4477 | gap 1, opp_overlap 483790 AAATTGCCAAAAAAA GACCGCTTGTA-ATG CTGAT CATGCACAAGCGGTC TTTTTCTTAAATATC TERM 808 483790 - 483823 + T 100 -9 -5.12068 | gap 1, opp_overlap 483790 AAATTGCCAAAAAAA GACCGCTTGT-AATG CTGAT CATGCACAAGCGGTC TTTTTCTTAAATATC waaQ 485772 - 484735 - | heptosyltransferase TERM 809 485255 - 485265 + g 71 -3.2 -5.06414 | overlap 485244 485241 485236 ATTTGCAGATTTTTT GCTA ATT TGGC TTTTTGTTGCGCAAG TERM 810 485323 - 485337 + g 85 -7.1 -4.82901 | opp_overlap 485325 485333 CGGATTAGGCTCAAC CACCG CAATA CGGTG TTTTTGTAGAAAAGC argG 486016 - 487347 + | argininosuccinate synthase TERM 811 487383 - 487416 + F 76 -4.5 -5.19261 | opp_overlap 487388, overlap 487388 AAACTTAGAATCAAT CAAAAGCCCCATAGT TTAC GCTTTGGGGCTTTAA TTTTTTCATCAGTTT TERM 812 487411 - 487388 - f 86 -8.1 -4.51197 | opp_overlap 487383 487388 TAGAATCAATCAAAA GCCCCATAG TTTACG CTTTGGGGC TTTAATTTTTTCATC TERM 813 487388 - 487411 + F 90 -8.8 -4.45175 | opp_overlap 487388, overlap 487383 TAGAATCAATCAAAA GCCCCATAGT TTAC GCTTTGGGGC TTTAATTTTTTCATC rnh 487469 - 487930 + | ribonuclease H TERM 814 487997 - 488011 + F 70 -2.8 -5.10077 | overlap 487998 GCTTGTAAATTTTTT GGCATA TAT TATGCA TTTTTTACGATGTTT TERM 815 488022 - 488040 + F 88 -5.3 -5.61277 | overlap 488023 ATGCATTTTTTACGA TGTTTGC TCTAC GCAAACG TTTTCTTTTTTTGTA cvpA 488087 - 488590 + | colicin V production protein purF 488604 - 490121 + | amidophosphoribosyltransferase TERM 816 490126 - 490181 + T 100 -8.4 -5.1485 | opp_overlap 490137 490140, overlap 490140 490174 490178 ACGAAAACTAAATTC AAGCATAAAAACAAGCCCTTGAGTCC GCGA GGATTCAAGGGCTTTTCTGTATGATA TTTTTATCTTACTTA TERM 817 490170 - 490137 - T 100 -12.5 -4.98857 | opp_overlap 490126 490140, overlap 490140 ATTCAAGCATAAAAA CAAGCCCTTGAGTCC GCGA GGATTCAAGGGCTTT TCTGTATGATATTTT TERM 818 490167 - 490140 - T 100 -14.2 -4.58563 | opp_overlap 490140 490126, overlap 490137 CAAGCATAAAAACAA GCCCTTGAGTCC GCGA GGATTCAAGGGC TTTTCTGTATGATAT TERM 819 490140 - 490167 + T 100 -16.4 -4.63586 | opp_overlap 490137 490140, overlap 490126 CAAGCATAAAAACAA GCCCTTGAGTCC GCGA GGATTCAAGGGC TTTTCTGTATGATAT APJL_0451 490645 - 490190 - | hypothetical protein TERM 820 490525 - 490539 + g 100 -8.6 -4.81359 | GTATAAGTATTTTTA TATCCG TTT CGGATA TTTTATATTTAACTT TERM 821 490724 - 490711 - R 95 -8.1 -4.85782 | opp_overlap 490711 TTGCGCAAAAAGAAA CCCTC CGAA GAGGG TTTATATTATATAAA TERM 822 490711 - 490724 + r 81 -8.1 -4.31164 | opp_overlap 490711 TTGCGCAAAAAGAAA CCCTC CGAA GAGGG TTTATATTATATAAA gdhA 492084 - 490744 - | glutamate dehydrogenase TERM 823 492133 - 492121 - R 73 -3.5 -5.10154 | ATTTAAAATGAAAAA TATTT ATC AAATA GTAGTGTGTTTAGCA TERM 824 492221 - 492202 - R 85 -3.7 -5.71638 | opp_overlap 492202 CAATAATTAAAAAAA TTTATCA AATATA TGATAAA AATTTATTATTTGGT TERM 825 492350 - 492369 + r 73 -9.3 -2.81291 | opp_overlap 492350, overlap 492349 AATGGGTAAAAGAAA GCCCACT ATATAA AGTGGGC GTTTGAAGTTGTCAA TERM 826 492369 - 492350 - R 91 -9.3 -4.66535 | opp_overlap 492350 492349 AATGGGTAAAAGAAA GCCCACT ATATAA AGTGGGC GTTTGAAGTTGTCAA smpA 492732 - 492388 - | small protein A ndpA 493804 - 492803 - | nucleoid-associated protein NdpA APJL_0455 493897 - 494286 + | putative translation initiation inhibitor APJL_0456 494314 - 495051 + | hypothetical protein APJL_0457 495471 - 495271 - | hypothetical protein leuB 495616 - 496698 + | 3-isopropylmalate dehydrogenase TERM 827 496720 - 496778 + T 100 -13.7 -3.94409 | gap 2, opp_overlap 496721 496724, overlap 496721 496724 AATTATTTCGTATAA -ACAAGCGGTCGAAATTTGAA-AATAATT TGC AAAAATTCTTCAAATTTCGACCGCTTGTC TTTATGCCTAATGTA TERM 828 496721 - 496776 + T 100 -18.8 -3.55824 | gap 1, opp_overlap 496721 496724, overlap 496720 496724 ATTATTTCGTATAAA CAAGCGGTCGAAATTTGAA-AATAATT TGC AAAAATTCTTCAAATTTCGACCGCTTG TCTTTATGCCTAATG TERM 829 496776 - 496721 - T 100 -21 -3.87075 | gap 1, opp_overlap 496720 496721 496724, overlap 496724 ATTATTTCGTATAAA CAAGCGGTCGAAATTTGAAAATAATTT GCA AAAAT-TCTTCAAATTTCGACCGCTTG TCTTTATGCCTAATG TERM 830 496773 - 496724 - T 100 -16.9 -4.06687 | gap 1, opp_overlap 496721 496720 496724, overlap 496721 ATTTCGTATAAACAA GCGGTCGAAATTTGAAAATAATTT GCA AAAAT-TCTTCAAATTTCGACCGC TTGTCTTTATGCCTA TERM 831 496724 - 496773 + T 100 -14.7 -3.90766 | gap 1, opp_overlap 496724 496721, overlap 496721 496720 ATTTCGTATAAACAA GCGGTCGAAATTTGAA-AATAATT TGC AAAAATTCTTCAAATTTCGACCGC TTGTCTTTATGCCTA msrB 497217 - 496822 - | methionine sulfoxide reductase B gapA 497440 - 498444 + | glyceraldehyde 3-phosphate dehydrogenase TERM 832 498468 - 498488 + F 100 -12.6 -5.96894 | opp_overlap 498453 GTCGCTTATTGCATA CGCCACTC CAAAA GAGTGGCG TTTTTTTGTTTAAAT TERM 833 498578 - 498595 + F 70 -5.6 -4.41512 | TTTACGCATAATTTT TTGCTC CATTGC GAGCAA TCTTTTTTATTATCG mreB 498640 - 499692 + | rod shape-determining protein TERM 834 499721 - 499757 + F 95 -12.6 -4.34488 | gap 1, opp_overlap 499717 499715 TGATATGAATATTTA CGATGGATAATGG-CAT TCGA ATGTCCATTATCCATTG TTTATTATCAATCTC mreC 499809 - 500858 + | rod shape-determining protein mreD 500858 - 501346 + | rod shape-determining protein TERM 835 501404 - 501436 + F 75 -9.8 -2.87211 | gap 1, opp_overlap 501414 GATTTTAGACCGCTG C-CCGCCAGAATGCG TCCA CGCACACTGGCGGAG TATATCGGGCAAGCT APJL_0464 501413 - 502699 + | recombination factor protein RarA TERM 836 502837 - 502850 + G 82 -8.1 -4.50976 | opp_overlap 502835 502836 CTGGCATTTATAACG GCACC GCTC GGTGC TTTTGTCGTATGGCG TERM 837 502907 - 502927 + G 84 -3.9 -5.43866 | TTTCTCATTCCGCCT TACTTGGCG TTG CGCTCGGTA TTTTTTTACAGATTG znuB 502780 - 503565 + | high-affinity zinc uptake system membrane protein TERM 838 503680 - 503712 + F 74 -4.7 -4.85599 | opp_overlap 503680, overlap 503686 TTTGCAACAATATAT CCGTTAGGCCAGC TAGACCT GCTGGCCTTTCTG TTTTTATAACCTACC TERM 839 503686 - 503706 + F 91 -9.7 -4.60808 | opp_overlap 503680, overlap 503680 ACAATATATCCGTTA GGCCAGC TAGACCT GCTGGCC TTTCTGTTTTTATAA TERM 840 503915 - 503929 + G 70 -7.8 -3.72893 | TCGACCGGGCGCATC TTCGCC GAT GGCGGA TTTAGTCGGACAATA APJL_0466 503745 - 504542 + | putative glutamine amidotransferase TERM 841 504593 - 504564 - T 88 -5 -5.63504 | opp_overlap 504565, overlap 504565 AATTCCATAAAAAAA TGACCGCTTG TTATTTATTG CAAGCGGTCT TTTTTTATCTGTTTT TERM 842 504592 - 504565 - T 77 -8.5 -3.96475 | opp_overlap 504565, overlap 504564 ATTCCATAAAAAAAT GACCGCTTG TTATTTATTG CAAGCGGTC TTTTTTTATCTGTTT TERM 843 504565 - 504592 + T 100 -10.6 -5.82281 | opp_overlap 504565 504564 ATTCCATAAAAAAAT GACCGCTTGTTA TTTA TTGCAAGCGGTC TTTTTTTATCTGTTT TERM 844 504608 - 504639 + T 71 -9 -3.2043 | gap 1, opp_overlap 504616, overlap 504616 TTTTTTTATCTGTTT TTAGCAAACGGAAAT TAG GTTTCCGTTTG-TAA TCCTTTTCTGATCAT TERM 845 504616 - 504632 + T 73 -7.3 -4.05816 | opp_overlap 504616, overlap 504608 TCTGTTTTTAGCAAA CGGAAAT TAG GTTTCCG TTTGTAATCCTTTTC mET2 505698 - 504622 - | homoserine O-acetyltransferase TERM 846 505687 - 505701 + g 72 -6.4 -4.28361 | opp_overlap 505681 TGAAAAAAGGGTAAT GCTATG CGC CATGGC TTTTCCTAAGGTTAC sanA 505990 - 506679 + | SanA protein TERM 847 506754 - 506774 + T 100 -10.5 -5.626 | CATTATTATTTTTAA GCTGATTCA GTT TGAATCGGC TTTTTTTATAAAGTG TERM 848 506902 - 506913 + T 77 -3 -5.44119 | opp_overlap 506893 506902 AATGCATATAAAGTA TAGA TAAA TCTA TTTTTTTGAAGTAAG TERM 849 510295 - 510281 - T 74 -4.2 -4.90778 | overlap 510283 CTGATGCAAATAAAA CGGTAA GTC TAACCG AAACCGGTTTGAATA TERM 850 510468 - 510438 - T 72 -7.5 -3.7282 | overlap 510445 TGATGGTACGAATAA CACAGCAGTACCG GATAG CGGTACGGTTGCG GTAAAAGGTTCAGCG TERM 851 512060 - 512050 - T 73 -6.8 -4.32048 | opp_overlap 512048 512050, overlap 512051 CAAGAACAGTTAAAA TCCG TTT CGGA TGTTGTGCAAAACGG TERM 852 513277 - 513259 - T 71 -4.4 -4.7254 | ATCGTTTACGAAAAA CCGAACGG TGG CGGTACGG AAGAAATCGCAACGC TERM 853 516932 - 516909 - T 73 -6.8 -4.32482 | AGTGATAACGGAAAA GTTATCTTGA AACT TCAAGGTAAC GCTAATACACGAGGC TERM 854 517011 - 517045 + T 79 -11.1 -3.03505 | gap 1, opp_overlap 517014 517020, overlap 517020 TCTTGTAGCTTAACT TAATAAAAATGCAGTC TTCG GACTGCATTTTT-TTA TGCTCTTTTTCGGTT TERM 855 517043 - 517014 - T 80 -10.9 -3.18274 | opp_overlap 517011 517020, overlap 517020 TGTAGCTTAACTTAA TAAAAATGCAGTC TTCG GACTGCATTTTTT TATGCTCTTTTTCGG TERM 856 517037 - 517020 - T 100 -9.9 -5.13741 | opp_overlap 517011 517020, overlap 517014 TTAACTTAATAAAAA TGCAGTC TTCG GACTGCA TTTTTTTATGCTCTT TERM 857 517020 - 517037 + T 100 -9.9 -5.70829 | opp_overlap 517020 517014, overlap 517011 TTAACTTAATAAAAA TGCAGTC TTCG GACTGCA TTTTTTTATGCTCTT TERM 858 517224 - 517267 + T 70 -9 -3.07132 | opp_overlap 517228, overlap 517221 517227 517228 GTTATTTGTAATAAA TAAACGGTCTGATTTGCAAA AAAT TTAACAAATCAGACCGCTTG TCATTTATCTCAGTA TERM 859 517227 - 517264 + T 74 -8.5 -3.67102 | opp_overlap 517228, overlap 517224 517221 517228 ATTTGTAATAAATAA ACGGTCTGATTTGCAAA AAAT TTAACAAATCAGACCGC TTGTCATTTATCTCA TERM 860 517228 - 517263 + T 84 -12 -2.79538 | opp_overlap 517228, overlap 517227 517224 517221 TTTGTAATAAATAAA CGGTCTGATTTGCAAA AAAT TTAACAAATCAGACCG CTTGTCATTTATCTC TERM 861 517263 - 517228 - T 100 -14.2 -4.67607 | opp_overlap 517227 517224 517221 517228 TTTGTAATAAATAAA CGGTCTGATTTGCAAA AAAT TTAACAAATCAGACCG CTTGTCATTTATCTC APJL_0471 517994 - 517296 - | hypothetical protein ykgF 519532 - 518123 - | iron-sulfur electron transport protein ykgE 520267 - 519542 - | putative dehydrogenase subunit TERM 862 519964 - 519942 - G 86 -12 -2.9348 | opp_overlap 519942 GTTAAATCGTATAGA CGTGCGGCAA TTT TTTCCGCACG TTTCGCCCATTCCGG TERM 863 519942 - 519964 + g 93 -12 -3.57561 | opp_overlap 519942 GTTAAATCGTATAGA CGTGCGGCAA TTT TTTCCGCACG TTTCGCCCATTCCGG TERM 864 520355 - 520323 - R 74 -5 -4.7416 | gap 1, opp_overlap 520326 520331, overlap 520314 520326 520331 TTAAAATGCCAAAAA TGACAAAAGGAAGTC AGCT GACTTCCTTTTA-CT TAATATAGGTAGAAA TERM 865 520326 - 520353 + r 73 -10 -2.5655 | opp_overlap 520314 520323 520326 520331, overlap 520331 AAATGCCAAAAATGA CAAAAGGAAGTC AGCT GACTTCCTTTTA CTTAATATAGGTAGA TERM 866 520353 - 520326 - R 87 -12.2 -3.26839 | opp_overlap 520326 520331, overlap 520314 520323 520331 AAATGCCAAAAATGA CAAAAGGAAGTC AGCT GACTTCCTTTTA CTTAATATAGGTAGA TERM 867 520331 - 520348 + r 91 -9.9 -4.4773 | opp_overlap 520331 520326 520323, overlap 520326 CCAAAAATGACAAAA GGAAGTC AGCT GACTTCC TTTTACTTAATATAG TERM 868 520348 - 520331 - R 100 -9.9 -4.72556 | opp_overlap 520326 520331, overlap 520326 520323 CCAAAAATGACAAAA GGAAGTC AGCT GACTTCC TTTTACTTAATATAG lctP 522032 - 520437 - | L-lactate permease TERM 869 522194 - 522210 + r 87 -2.3 -6.09196 | overlap 522184 AATAACCATTAAAAT TAGTGGA GTT TTTACTA TTTTTTTGTTTTAAC TERM 870 522483 - 522459 - R 100 -10.1 -6.11229 | opp_overlap 522459 AGTAAAATAAAAAAA CGGGATTAATA TTA TATTAGTCCCG TTTTTTATGATGAAA TERM 871 522459 - 522483 + r 100 -12.3 -5.31275 | opp_overlap 522459 AGTAAAATAAAAAAA CGGGATTAATA TTA TATTAGTCCCG TTTTTTATGATGAAA hns 522908 - 522501 - | DNA-binding protein H-NS TERM 872 522659 - 522686 + g 75 -8.6 -3.79113 | gap 1, overlap 522659 CACGTTTCTTGTGTT C-CGTGGCATTAT TCA ATAATGCTACGAG TTCTTCTGCCGAGAT APJL_0476 523465 - 524982 + | Na+/H+ antiporter TERM 873 525005 - 525048 + F 100 -21.4 -5.66229 | opp_overlap 525008 TGCAATCCTTTTTGA CAAGCGGTGAAATTTGTAAG AATT TTTGCAAATTTCACCGCTTG TTTTTTATTGTTGCT TERM 874 525045 - 525008 - f 100 -14.4 -3.29043 | opp_overlap 525005 AATCCTTTTTGACAA GCGGTGAAATTTGTAA GAATTT TTGCAAATTTCACCGC TTGTTTTTTATTGTT mglB 525188 - 526159 + | D-galactose transport system substrate-binding protein sucD 527166 - 526294 - | succinyl-CoA synthetase alpha chain sucC 528335 - 527169 - | succinyl-CoA synthetase beta chain TERM 875 528466 - 528448 - R 100 -9.6 -5.74086 | opp_overlap 528448 528446 AAATCAAAGAAAAAA GACCGCTT GTA AAACGGTC TGTTATTTATGGCTA lapB 529345 - 528479 - | hypothetical protein TERM 876 528912 - 528927 + g 78 -5.4 -5.07053 | gap 1, opp_overlap 528912, overlap 528926 AATGTTAATAAATAA GCGAGCC GGC GGCT-GC TTTTTTGGCGTAATT TERM 877 529204 - 529221 + g 73 -9.9 -2.93785 | CGGAAAGTTCAGGGT GTCGGTT TGCA AACCGAC TAAATTTTTTGACTT TERM 878 529466 - 529439 - R 100 -12.9 -5.00616 | overlap 529421 CTTTCTTGCAAAAAA TAACCGCTTGT TTAAGT ACAAGCGGTTA AAAATGAGTGTAAAA sucB 530717 - 529488 - | dihydrolipoamide succinyltransferase TERM 879 530199 - 530214 + g 70 -7.6 -3.71686 | opp_overlap 530201 ACGAGCGGAGTAAGC TACGGT ACTT ACCGTA TTGTGTTCGCTTGCC APJL_0482 533647 - 530837 - | alpha-ketoglutarate decarboxylase TERM 880 530982 - 531010 + g 74 -8.1 -3.9461 | opp_overlap 530990, overlap 530990 TCAAAATTATGTTTA CTGCAATACCATG CGC CTTGGTTTTGCGG TTCTTCTTGACACCA znuC 534690 - 533890 - | zinc ABC transporter, ATP-binding protein TERM 881 536047 - 536061 + G 71 -10 -2.72991 | overlap 536049 536057 GAACGCCGATTATCG CACCGT CGG ACGGTG TGGTTGAACATATCG APJL_0484 534894 - 536384 + | putative metalloprotease TERM 882 536945 - 536933 - g 76 -7.7 -4.1196 | AACCGATGCGGAAAA CGGTA CTT TACCG AAAGAAGTAAAAACA dsbC 536403 - 537098 + | thiol:disulfide interchange protein TERM 883 537160 - 537116 - f 93 -13.1 -3.03159 | opp_overlap 537116, overlap 537119 537138 TTAAGTCCTTGAATA CAAGCGGTCTGATTTTGTAAA ATT TTTGCAAAATGATACCGCTTG TTTTATTTATAACGA TERM 884 537116 - 537160 + F 100 -15.3 -4.99043 | opp_overlap 537116 537119 537138 TTAAGTCCTTGAATA CAAGCGGTCTGATTTTGTAAA ATT TTTGCAAAATGATACCGCTTG TTTTATTTATAACGA TERM 885 537157 - 537119 - f 78 -9 -3.65991 | opp_overlap 537116, overlap 537116 537138 AGTCCTTGAATACAA GCGGTCTGATTTTGTAAA ATT TTTGCAAAATGATACCGC TTGTTTTATTTATAA TERM 886 537579 - 537595 + G 79 -6.6 -4.67697 | TGCGGATTTGGTCAT TACCGT GGATA ACGGTA TTTCTTCTTTTGAAG recJ 537367 - 538905 + | single-stranded-DNA-specific exonuclease plpD 539039 - 539890 + | lipoprotein TERM 887 539924 - 539943 + F 100 -10.8 -5.24449 | opp_overlap 539923 539922 CTGGAGTAAAATAGG GGCTACTT TATA AAGTAGCC TTTTTTACGTTTATG APJL_0488 539972 - 540790 + | phosphatase TERM 888 541928 - 541947 + G 95 -7.8 -5.09426 | GAGAACTGCATGATT CGTTGGCG CAGT CGCTGACG TTTTTTAAAATTCAA TERM 889 542462 - 542448 - g 70 -3.5 -4.77438 | gap 1, opp_overlap 542448 ATTCAGTATTAAAAA CCGTCC GGAA GG-CGG TGTTGAAGTAGTGGT narQ 540790 - 542505 + | nitrate/nitrite sensor protein NarQ TERM 890 542720 - 542710 - g 87 -8.2 -4.46656 | GGTAGAAGATGAAAA CGGC ATT GCCG GCTGGTTTAGCTTTT APJL_0490 542528 - 543046 + | sortase and related acyltransferase APJL_0491 543087 - 543683 + | putative deoxyribonucleotide triphosphate pyrophosphatase APJL_0492 543711 - 544031 + | hypothetical protein TERM 891 544118 - 544100 - T 100 -11.7 -5.26316 | opp_overlap 544100 TTATCCTATAAAAAA TCCCCGC ATTTG GCGGGGA TTTTTGTAAGCGTTA TERM 892 544100 - 544118 + T 100 -11.7 -4.8543 | opp_overlap 544100 TTATCCTATAAAAAA TCCCCGC ATTTG GCGGGGA TTTTTGTAAGCGTTA fhs 545771 - 544137 - | formate--tetrahydrofolate ligase TERM 893 544259 - 544248 - G 72 -7.2 -4.06562 | AATCGCAACGATAAA GCCG GCAC CGGC AGAGACGCTAATACT TERM 894 545830 - 545841 + H 74 -4.4 -5.00616 | opp_overlap 545830 TCCAAAAAAATAAGC GCAA ACGT TTGC TTTTTTAAAACCCCG APJL_0494 545917 - 546363 + | hypothetical protein TERM 895 546366 - 546416 + F 100 -15.8 -4.17516 | opp_overlap 546369, overlap 546369 TGATGAGGTTTAAGC TAACAAGCGGTTGTATTTGGTGAA AAA TTTGCAAAATATGACCGCTTGTTA TTTATATGATTTAAA TERM 896 546369 - 546413 + F 100 -13.1 -4.19324 | opp_overlap 546369, overlap 546366 TGAGGTTTAAGCTAA CAAGCGGTTGTATTTGGTGAA AAA TTTGCAAAATATGACCGCTTG TTATTTATATGATTT TERM 897 546772 - 546749 - g 70 -7.6 -3.70331 | gap 1, opp_overlap 546749, overlap 546747 AACCGATTTAAAAGA TTGGTATCAGA TGA TC-GATACCAA TATTAAAGGGCTGGT APJL_0495 546453 - 547202 + | NADP-dependent dehydrogenase TERM 898 547215 - 547239 + F 83 -9.3 -3.95153 | overlap 547216 547236 TAATTTCTAACTTGT TACCCCTCTTT GCT AAAGAGGGGAG TTTATAACTCATTGA TERM 899 547216 - 547238 + F 78 -10.6 -2.9661 | overlap 547215 547236 AATTTCTAACTTGTT ACCCCTCTTT GCT AAAGAGGGGA GTTTATAACTCATTG TERM 900 547338 - 547363 + F 74 -8.5 -3.75817 | opp_overlap 547341, overlap 547336 TTGCATATCGTGAAG TTATGTACTAT TTTA ATAGTGCATAA TATTTATTATAGAGA TERM 901 547521 - 547504 - g 74 -9.9 -3.08032 | opp_overlap 547503 547504 TGCTGCGCAAAATGA TCCGCTT TTCC AAGCGGA ATTTACCGACTTACT TERM 902 547504 - 547521 + G 72 -9.9 -2.74501 | opp_overlap 547504, overlap 547503 TGCTGCGCAAAATGA TCCGCTT TTCC AAGCGGA ATTTACCGACTTACT trpB 547388 - 548578 + | tryptophan synthase subunit beta trpA 548580 - 549389 + | tryptophan synthase subunit alpha TERM 903 549462 - 549407 - T 75 -10 -2.76651 | gap 1, opp_overlap 549407 549410 549458, overlap 549410 AAAATATCTCAATGA CAAGCGGTTAAATTCTCCGAAAAATTT GCA AAATTTAAAGGGG-ATTTAACCGCTTG TGTTTAAGCTGCATT TERM 904 549407 - 549462 + T 89 -12.2 -3.3879 | gap 1, opp_overlap 549407 549410, overlap 549410 549458 AAAATATCTCAATGA CAAGCGGTTAAATTCTCCGAAAAATTT GCA AAATTTAAAGGGGA-TTTAACCGCTTG TGTTTAAGCTGCATT TERM 905 549410 - 549459 + T 77 -8.1 -3.82946 | gap 1, opp_overlap 549410 549407, overlap 549407 549458 ATATCTCAATGACAA GCGGTTAAATTCTCCGAAAAATTT GCA AAATTTAAAGGGGA-TTTAACCGC TTGTGTTTAAGCTGC APJL_0498 549759 - 549466 - | hypothetical protein APJL_0499 550052 - 549768 - | hypothetical protein TERM 906 552135 - 552124 - g 86 -5.8 -5.40072 | overlap 552128 CTGTCTTGAAAAAAA CACC GAAA GGTG CGCCTTCTACCAATG polA 550347 - 553106 + | DNA polymerase I TERM 907 553248 - 553238 - g 74 -6.8 -4.37886 | TGAGTTTTTAGAAAA GAGC GTA GCTC AAGGAATAAAAGATT APJL_0501 553161 - 553358 + | hypothetical protein APJL_0502 553348 - 553641 + | plasmid stabilization system protein protein lolA 553781 - 554422 + | outer-membrane lipoprotein carrier protein TERM 908 554436 - 554475 + F 91 -11.6 -4.20834 | opp_overlap 554456 AATCTAATTTTACTA GCGGTTTTATTTTCGCAA AATT TTGCCAAAATCAGACCGC TTTCCTTATTTTGGA APJL_0504 554497 - 554805 + | Trp operon repressor APJL_0505 554834 - 555595 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 909 555596 - 555643 + T 95 -13 -3.5774 | opp_overlap 555601, overlap 555601 TTAGAAAAACTATAG AAAAAGCGGTGGAATTTGCAAA AGAA TTTGTAAACTTCACCGCTTTTA TTTGGGGGATTCAAT TERM 910 555638 - 555601 - T 100 -10.7 -5.07941 | opp_overlap 555596 555601 AAAACTATAGAAAAA GCGGTGGAATTTGCAAA AGAA TTTGTAAACTTCACCGC TTTTATTTGGGGGAT TERM 911 555601 - 555638 + T 100 -12.9 -4.87133 | opp_overlap 555601, overlap 555596 AAAACTATAGAAAAA GCGGTGGAATTTGCAAA AGAA TTTGTAAACTTCACCGC TTTTATTTGGGGGAT APJL_0506 556000 - 555665 - | putative gamma-carboxymuconolactone decarboxylase subunit APJL_0507 557031 - 556027 - | putative inner membrane transport protein TERM 912 556583 - 556598 + g 76 -7.6 -4.11216 | opp_overlap 556595 GCCGGTGTTATTTGC GCCAAT TTAA ATTGGC TTTTGAAAATCCAGC APJL_0508 557387 - 557046 - | hypothetical protein APJL_0509 558741 - 557398 - | sulfide:quinone oxidoreductase APJL_0510 558998 - 558786 - | hypothetical protein APJL_0511 559153 - 559440 + | transcriptional regulator TERM 913 560181 - 560169 - g 74 -6.2 -4.48743 | opp_overlap 560168 AAAACCTTAAATAAA GCGG TGCGT CCGC ATATGTTACCGTTTT APJL_0512 559515 - 560225 + | nitroreductase A TERM 914 561067 - 561049 - g 80 -8.8 -3.91911 | GGTATTGGAAGTAAA TGCCAGCC CGG GGCTGGAA GGGATTGAACAGGCA rimK 560222 - 561136 + | ribosomal protein S6 modification protein APJL_0514 561929 - 561171 - | hypothetical protein TERM 915 563552 - 563533 - H 83 -9.3 -3.92716 | opp_overlap 563533 TTAAAATAATTGAAA GAGGCGA GATTAT TCGCCTC TTTTTGTTTTGCATT TERM 916 563533 - 563552 + H 100 -10 -5.49568 | opp_overlap 563533 TTAAAATAATTGAAA GAGGCGAG ATTA TTCGCCTC TTTTTGTTTTGCATT TERM 917 563595 - 563579 - H 76 -5.1 -5.0133 | CATTTTGGTAAAAAA GTGCGTA GAA TATGCAC TCGGCTTTTTCAGCC TERM 918 563628 - 563645 + H 88 -5.5 -5.47159 | opp_overlap 563616 563628 AATTATTTTGTGAAA TAGCTGG GTCG CCTGCTA TTTTTTATATTCACG TERM 919 563660 - 563674 + H 82 -6.4 -4.98531 | ATTTTTTATATTCAC GGAACG TTA TGTTCC TTTTTACTTTAAGAG rplY 563699 - 563986 + | 50S ribosomal protein L25 TERM 920 564014 - 564039 + F 100 -9.9 -5.63517 | opp_overlap 564014 564012 TGTGAATTAGTAAGA GGATTAAGTTT TTCG GAACTTAATCC TTTTTTATTTGCCAA TERM 921 564039 - 564014 - f 75 -9.2 -3.20227 | opp_overlap 564014, overlap 564012 TGTGAATTAGTAAGA GGATTAAGTT TTTCGG AACTTAATCC TTTTTTATTTGCCAA TERM 922 564046 - 564089 + F 76 -10.5 -2.74263 | opp_overlap 564058 564081, overlap 564045 ACTTAATCCTTTTTT ATTTGCCAATAATTAGCCG AACAAG CGGTTAAATATTGGCAAAA CTTTGCAAATCCGCT TERM 923 564518 - 564539 + F 100 -10.9 -5.8096 | opp_overlap 564518 TTATTTTTTAGGAAA GCGAACAGG GTAA CTTGTTCGC TTTTTGTTTTTTATA TERM 924 564539 - 564518 - f 78 -8.7 -3.73224 | opp_overlap 564518 TTATTTTTTAGGAAA GCGAACAGG GTAA CTTGTTCGC TTTTTGTTTTTTATA TERM 925 564672 - 564662 - g 81 -4 -5.27023 | ATCTTAAAAATAAAA TTCT AGT AGAA GGAACGAACCTGAAA APJL_0518 564565 - 565206 + | ABC-type uncharacterized transport system, periplasmic component TERM 926 565373 - 565385 + G 91 -7.7 -4.8667 | overlap 565352 AGCCGGTATTACCTT GCTGA TTA TCAGC TTTTTATACGGTGTA APJL_0519 565329 - 566192 + | putative nickel/cobalt efflux system TERM 927 567465 - 567452 - g 75 -5.3 -4.8048 | TCGTTATATCAAAAA CAAAC CTTG GTTTG TGTGGGCTTTCCGTG APJL_0520 566292 - 567740 + | putative sodium/alanine symporter TERM 928 567770 - 567795 + F 100 -9.1 -5.36441 | opp_overlap 567770 GCATTAGCTAAAGAA GCGATAATATC TTAT GGTGTTATCGC TTTTTTATATCCGGC TERM 929 567805 - 567822 + F 72 -4.1 -4.89562 | TATCGCTTTTTTATA TCCGG CGATAAGT CCGGA TTTTGTTAATTTTGA TERM 930 567869 - 567882 + F 86 -5.3 -5.40072 | overlap 567852 567861 TGCCGATTAAATCTG TGAGA TTTC TCTCA TTTTTTTAAGCAAAC APJL_0521 568131 - 568223 + | hypothetical protein nasD 568337 - 568861 + | ABC transporter, ATP-binding protein TERM 931 569013 - 569023 + G 71 -6.8 -4.08692 | overlap 569018 569019 TAATCTAAATTGTCG CACC GCC GGTG TTTTAGCACCGATTG thiF 568933 - 569154 + | putative thiamine biosynthesis protein thiS 569230 - 569430 + | thiamine biosynthesis protein TERM 932 569491 - 569475 - f 73 -2.2 -5.28826 | overlap 569476 AAACTTTAGAAAAAA TCCTTC ACTCG GAAGGC ATATAGATAAGGAAA thiG1 569511 - 569732 + | putative thiamine biosynthesis protein thiG2 569866 - 570276 + | putative thiamine biosynthesis protein TERM 933 571288 - 571271 - g 76 -7.7 -4.09685 | GCGCAGGCTCGAAAA CACAGCC GGGC GGCTATG CGGAAGAAGACGATA thiH 570286 - 571431 + | thiamine biosynthesis protein TERM 934 571613 - 571630 + G 71 -8.4 -3.51934 | opp_overlap 571608, overlap 571611 TCTTTATCAATATTG CCGAGC ATTATC GCTCGG TGTTTATAAAGCGGA TERM 935 571707 - 571718 + G 73 -5.8 -4.4767 | TTAAACGAGGTGGAA CTGC ACTT GCAG TTTTGTCGTGAATGG TERM 936 571778 - 571762 - g 72 -6.5 -4.24963 | opp_overlap 571762 571774 571776 571777 TAGAAGTACGTAAAA CGCCG GAAAGCT CGGCG TGTGTCGCTTATACG TERM 937 571846 - 571866 + G 71 -9.7 -2.57564 | overlap 571845 CCGATCTATTTATGG CGATAGCAC CTT GTGCAATCG GTTATGCGGAAATCG APJL_0528 571458 - 572108 + | putative transcription activator APJL_0529 572131 - 572931 + | sulfonate/nitrate/taurine transport system substrate-binding protein TERM 938 573446 - 573436 - f 72 -8.2 -3.59315 | opp_overlap 573435 573436, overlap 573428 GTAATGATCGCCAAA GGCG GTG CGCC GTTATTACAACAAAA TERM 939 574139 - 574196 + F 100 -13.1 -5.4588 | gap 1, opp_overlap 574143 574173, overlap 574140 TAATTTTTTACTTAT ACAAGCGGTC-TTTTTTCAAGATTTTTT TGC AAAATTTCTTGGAAAAACGACCGCTTGC TTTTTTGTGCTTTTC TERM 940 574140 - 574195 + F 100 -16.6 -3.85088 | gap 1, opp_overlap 574143 574173, overlap 574139 AATTTTTTACTTATA CAAGCGGTC-TTTTTTCAAGATTTTTT TGC AAAATTTCTTGGAAAAACGACCGCTTG CTTTTTTGTGCTTTT TERM 941 574192 - 574143 - f 82 -10.3 -3.51924 | gap 1, opp_overlap 574140 574139, overlap 574173 TTTTTACTTATACAA GCGGTC-TTTTTTCAAGATTTTTT TGC AAAATTTCTTGGAAAAACGACCGC TTGCTTTTTTGTGCT TERM 942 574856 - 574843 - g 91 -6.7 -5.42862 | overlap 574845 ACATCGTGAAAAAAA TTCCG GCAC CGGAA GGCGATCCCGATGCA lepA 574299 - 576098 + | GTP-binding protein LepA TERM 943 576653 - 576642 - g 70 -7.2 -3.76393 | AGACCTTAATTGAAA CCGG ACAT CCGG AACGTGGTGATGTGA lepB 576203 - 577162 + | signal peptidase I TERM 944 577182 - 577230 + F 95 -8.3 -4.85195 | opp_overlap 577182 577187, overlap 577184 TGAACGGGGTATATA TGCAAGCGGGTTTATTTTGTTAA AAA TCGGCAAAATATAACCGCTTGTA TTTTTACCTTGTTTT TERM 945 577184 - 577228 + F 81 -8.7 -4.01369 | opp_overlap 577182 577187, overlap 577182 AACGGGGTATATATG CAAGCGGGTTTATTTTGTTAA AAA TCGGCAAAATATAACCGCTTG TATTTTTACCTTGTT rnc 577258 - 577929 + | ribonuclease III era 577999 - 578913 + | GTP-binding protein Era TERM 946 579150 - 579140 - g 77 -8.2 -3.95042 | opp_overlap 579139 AAAACTTTAACCAAA GCGG AAC CCGC ATCATTAACCTTACC recO 578924 - 579646 + | DNA repair protein RecO TERM 947 579721 - 579684 - T 100 -13.1 -5.20781 | gap 1, opp_overlap 579684 TAGGACAAAATAAAA GCGATCTAATTTG-TAAA ACT CTTAGCAAATTAGATCGC TTATTTATATGAATA TERM 948 579684 - 579721 + T 100 -13.7 -4.15698 | opp_overlap 579684 TAGGACAAAATAAAA GCGATCTAATTTGTAAA ACTC TTAGCAAATTAGATCGC TTATTTATATGAATA tadG 581329 - 579740 - | Flp pilus assembly protein TERM 949 579896 - 579908 + g 82 -4.9 -5.30448 | opp_overlap 579896 ACCGAATTCGACAAA TACAA TTT TTGTA TTTTTGTCTTTATTT TERM 950 580462 - 580481 + g 77 -3.6 -5.20222 | gap 1, overlap 580465 AATTATTAATTAAAT CTGCTCGGT TAT ACTGAG-AG TTTTGTTTATTTAGT TERM 951 580690 - 580701 + g 90 -2.2 -6.0427 | ATATGCTTATTTTAC TTGG TTTA CCAG TTTTTTTTATCTCAT TERM 952 580777 - 580793 + g 77 -4.5 -4.91873 | CCATTAAATCAATTG GAATATT AAA AGTATTC TTTTTAATTGCTCTA tadF 582117 - 581353 - | tight adherence protein F TERM 953 581571 - 581583 + gr 77 -6.3 -4.64861 | TGTTAGTTGAATATT CTGAA GAT TTCAG TTTCTTTTCAGGACG tadE 582406 - 581921 - | tight adherence protein E TERM 954 582352 - 582329 - GR 86 -8.2 -4.37157 | AAGCACGAGAATAAA GAGTCCAATC GTTA GACTGAACTC AATAGTTGCAACGCC tadD 583161 - 582409 - | Flp pilus assembly protein tadC 583996 - 583151 - | Flp pilus assembly protein tadB 584883 - 583996 - | Flp pilus assembly protein TERM 955 584765 - 584791 + g 79 -3.1 -5.29742 | gap 1, overlap 584767 584768 584769 GTCGTTTTATTCAGT TTCTCGGTGAAA CCGG TTTCAC-GAGCA TTTATTTTTTTATGT tadA 586160 - 584883 - | tight adherence protein A TERM 956 585998 - 585988 - G 71 -8.2 -3.49102 | overlap 585977 585974 585989 AGACCCGCCATATAA GCGG CGT CCGC CGGTGTAAGATAAAT tadZ 587296 - 586169 - | Flp pilus assembly protein, ATPase TERM 957 586743 - 586777 + g 80 -2.9 -5.4251 | opp_overlap 586746, overlap 586762 AGATCCAAATCTTGA GAACCGTTATTAC CTTGAGCCA GTAATACCGGTAC TTTTTTCTCTGTAGA rcpB 587962 - 587459 - | rough colony protein B rcpA 589347 - 587959 - | Flp pilus assembly protein, secretin TERM 958 588546 - 588562 + g 72 -6.5 -4.36586 | TGGAAATATTCGGTT CGGCGAG AAT TTTGCCG TTGTTTTGATTATCT TERM 959 589217 - 589197 - G 74 -6.9 -4.24342 | opp_overlap 589196, overlap 589193 CTTCGGATGAAGAAA CGAAAATCG TAT CGATTTTGG CATTGGTTTTGATTA APJL_0549 589561 - 589337 - | hypothetical protein APJL_0550 589522 - 589779 + | hypothetical protein TERM 960 590521 - 590540 + G 79 -3.4 -5.25772 | AGAAGTTAATTAATT CGCCGCGT ATGT ACGGTGCG TTTTTATTGTGGTTT APJL_0551 589830 - 591329 + | ATPase TERM 961 591316 - 591332 + F 81 -8.1 -4.31397 | overlap 591314 GTGGGATTTTAGGCG CAATTAC TAA GTAATTG TTGTTTTATAGCGAT TERM 962 591356 - 591368 + F 76 -4.8 -4.90296 | opp_overlap 591362, overlap 591353 591356 591358 591359 TAGCGATATTATCTG CGAC AAGCG GTCG TTTTTGTGAAATTTT TERM 963 591356 - 591405 + F 100 -14.5 -4.66318 | opp_overlap 591362 591380, overlap 591353 591356 591358 591359 TAGCGATATTATCTG CGACAAGCGGTCGTTTTTGTGAA ATTT TTTGCAAAAACGACCGCTTGCTA TTTTATTGGAATGAT TERM 964 591358 - 591403 + F 100 -19.3 -3.94438 | opp_overlap 591362 591380, overlap 591353 591356 591356 591359 GCGATATTATCTGCG ACAAGCGGTCGTTTTTGTGAA ATTT TTTGCAAAAACGACCGCTTGC TATTTTATTGGAATG TERM 965 591359 - 591402 + F 100 -22.8 -2.9594 | opp_overlap 591362 591380, overlap 591353 591356 591358 591356 CGATATTATCTGCGA CAAGCGGTCGTTTTTGTGAA ATTT TTTGCAAAAACGACCGCTTG CTATTTTATTGGAAT TERM 966 591399 - 591362 - f 100 -14.3 -3.30441 | opp_overlap 591353 591356 591359 591358 591356, overlap 591380 TATTATCTGCGACAA GCGGTCGTTTTTGTGAA ATTT TTTGCAAAAACGACCGC TTGCTATTTTATTGG afuA2 591526 - 592557 + | iron(III) transport system substrate-binding protein TERM 967 592640 - 592663 + F 100 -9.7 -5.08824 | opp_overlap 592644 AAATTTAACCGCTTA TAAACCACG CTATGC CGTGGTTTA TTTTTTGAATAGCAC TERM 968 593096 - 593114 + G 82 -2.4 -5.58522 | GTGAGCTTGTTAGCG GTGGTATT AAC GATAGCAC TTTTTATTTTATATC TERM 969 593314 - 593326 + G 85 -4.1 -5.55698 | AAGCAAACGTACCCG CTTGC TCA GTAAG TTTTTTTCGGTTCTG TERM 970 593947 - 593957 + G 74 -6.8 -4.35518 | ACTCGCCGTGTGGGT CGGT TTT ACCG TTTTGCTGTACGGTT TERM 971 594269 - 594299 + G 78 -9.7 -3.54771 | overlap 594293 CTGGCGTTTAATCAT TCGCCGCTTTATC TTACC GGTACGGCGGCGA TTATCGTGTTGTCGA afuB2 592688 - 594688 + | iron(III) transport system permease protein TERM 972 594709 - 594764 + F 100 -13.9 -5.10029 | gap 2, opp_overlap 594709 594712, overlap 594747 TGTGCGTATTGATAA CAAGCGGTTATTTTTA-TTC-AAACTT TTGC AAGTTTTGGGCTAAAAATAACCGCTTG TTTTTTAGCATTGAT TERM 973 594764 - 594709 - f 76 -9.5 -3.35679 | gap 2, opp_overlap 594709 594747, overlap 594712 TGTGCGTATTGATAA CAAGCGGTTATTTTTA-TTC-AAACTT TTGC AAGTTTTGGGCTAAAAATAACCGCTTG TTTTTTAGCATTGAT TERM 974 595639 - 595610 - f 70 -5.7 -4.41302 | overlap 595613 GATGAAATGAATAAA GAATTGGCAATCG GTGC CGATTACCAAGGC GATAAATTACGTGTC TERM 975 595636 - 595613 - f 90 -10.4 -4.30104 | overlap 595610 GAAATGAATAAAGAA TTGGCAATCG GTGC CGATTACCAA GGCGATAAATTACGT TERM 976 596306 - 596296 - f 76 -2.4 -5.55695 | CAACAAGATAAAAAA GCCG GCA CGGA AGTCAAAGCGGATCG TERM 977 596986 - 597005 + F 83 -8.6 -4.1964 | gap 1, opp_overlap 596986 596987 597000, overlap 596986 596977 TACTGGCAAGTACAA C-GCGGTCA ATA TGACCGCAG TTTTGCCGTGTTAGG TERM 978 597004 - 596986 - f 84 -11 -3.51329 | opp_overlap 596986 596977 596986, overlap 596987 597000 TACTGGCAAGTACAA CGCGGTCA ATA TGACCGCA GTTTTGCCGTGTTAG TERM 979 596986 - 597004 + F 71 -8.8 -3.11302 | opp_overlap 596986 596987 597000, overlap 596977 596986 TACTGGCAAGTACAA CGCGGTCA ATA TGACCGCA GTTTTGCCGTGTTAG TERM 980 597003 - 596987 - f 83 -12.3 -2.70476 | opp_overlap 596986 596986 596977, overlap 596986 597000 ACTGGCAAGTACAAC GCGGTCA ATA TGACCGC AGTTTTGCCGTGTTA TERM 981 597076 - 597120 + F 100 -23.1 -5.70829 | opp_overlap 597065 TAAATAGCCATTTGG CAAGCGGTCGGATTTTGCAAA AAA TTTGCCAATTCCGACCGCTTG TTTTTTTATGCTCTT rpsB 599064 - 599780 + | 30S ribosomal protein S2 TERM 982 599816 - 599840 + F 100 -10.8 -4.86822 | gap 1 TTAAATCACTTTGGA GCAGGGGCGAT TTTT ATC-CCCCTGC TTTTCTTATCTAATT tsf 599876 - 600727 + | elongation factor Ts TERM 983 600769 - 600740 - T 87 -12.3 -3.18199 | opp_overlap 600747, overlap 600747 TAATTCTCAATTTAA TAAAAAAGCAGGC ATTA GCCTGCTTTTTTT CTGTCTGTTGCTATG TERM 984 600747 - 600762 + T 100 -10.4 -5.77988 | opp_overlap 600747 600740 CAATTTAATAAAAAA GCAGGC ATTA GCCTGC TTTTTTTCTGTCTGT TERM 985 600762 - 600747 - T 100 -10.4 -5.5074 | opp_overlap 600747, overlap 600740 CAATTTAATAAAAAA GCAGGC ATTA GCCTGC TTTTTTTCTGTCTGT TERM 986 600878 - 600888 + T 79 -8.2 -4.09511 | opp_overlap 600873, overlap 600883 ATCGGAATCACAATC GCCG GAT CGGC TTTTGCCGGAATCTT APJL_0561 602409 - 600856 - | membrane protein pyrH 602521 - 603234 + | uridylate kinase TERM 987 603298 - 603255 - f 78 -11.2 -2.70022 | opp_overlap 603239 603255, overlap 603254 CGTATGCGATACAAG CGGTCTGTATTCTTTACTTA TTTG CAAATAAAGAAAGCAGACCG TTTTTTGTTTGCTCG TERM 988 603255 - 603298 + F 100 -10.5 -5.68438 | opp_overlap 603255 603254, overlap 603239 CGTATGCGATACAAG CGGTCTGTATTCTTTACTT ATTTGC AAATAAAGAAAGCAGACCG TTTTTTGTTTGCTCG frr 603418 - 603975 + | ribosome recycling factor TERM 989 604014 - 603997 - T 100 -11.3 -5.1963 | opp_overlap 603997 CTGAATGAAGAAAAA GGCACGT GTTT ACGTGCC TTTATTTTTGCAAAA TERM 990 603997 - 604014 + T 100 -11.3 -4.85782 | opp_overlap 603997 CTGAATGAAGAAAAA GGCACGT GTTT ACGTGCC TTTATTTTTGCAAAA APJL_0564 605453 - 604053 - | transcriptional regulator APJL_0565 605540 - 606427 + | pyridoxine biosynthesis protein TERM 991 606814 - 606826 + G 71 -3.3 -5.06414 | opp_overlap 606802, overlap 606802 AAAGGATTTGCTGAT CCGTT TCC GGCGG TTTTTATTCGCGCAC APJL_0566 606427 - 607002 + | glutamine amidotransferase subunit PdxT TERM 992 607044 - 607016 - T 82 -10.4 -3.60098 | opp_overlap 607011 607021 AGTTTTTATCGTAAA TCTAAGGACATC ATTTA GGTGTCCTTAGA TCGAATTGCATTTTG APJL_0567 607666 - 607076 - | tRNA-specific adenosine deaminase TERM 993 607665 - 607648 - G 93 -9.1 -4.4261 | opp_overlap 607648 GTTCTAATAGCAAAA TGCCCCA AAAT CGGGGCA TTTATTAACGGGATC TERM 994 607648 - 607665 + g 79 -8.4 -4.1552 | opp_overlap 607648 GTTCTAATAGCAAAA TGCCCC AAAATC GGGGCA TTTATTAACGGGATC deaD 609542 - 607683 - | cold-shock DEAD box protein-A TERM 995 608852 - 608830 - G 71 -7 -4.16842 | TCCACTTCTAAGAAA CGCAATAACG CAT CGTTTTTACG GAAGCCGTTTACTAA TERM 996 609753 - 609715 - R 100 -15.5 -3.52073 | opp_overlap 609715 GTCCCAAGAGTATAA GCGGTCCGTTTTTACAA GAAAT TTGTAAAACCAGACCGC TTCATTCGTCCTAAT TERM 997 609715 - 609753 + r 100 -14 -3.41961 | opp_overlap 609715 GTCCCAAGAGTATAA GCGGTCCGTTTTTACAAG AAA TTTGTAAAACCAGACCGC TTCATTCGTCCTAAT nlpI 610705 - 609764 - | lipoprotein NlpI TERM 998 609888 - 609912 + g 77 -5 -5.04868 | gap 1, opp_overlap 609888 TTTGCAAGAGAGAGA CGGA-AAAGCG TAAT CGCTTCATCCG TTTTATTTAATTTGA TERM 999 610724 - 610762 + r 100 -12 -4.70659 | opp_overlap 610727, overlap 610727 GTAAATCGCCTATGA GAAGATATCTACCTTCAA GAA TTGAAAGTAGATATCTTA TTTTTAAATCTCAGC TERM 1000 610727 - 610759 + r 100 -13.7 -4.46215 | opp_overlap 610727, overlap 610724 AATCGCCTATGAGAA GATATCTACCTTCAA GAA TTGAAAGTAGATATC TTATTTTTAAATCTC TERM 1001 610759 - 610727 - R 100 -15.9 -3.40899 | opp_overlap 610724 610727 AATCGCCTATGAGAA GATATCTACCTTCAA GAA TTGAAAGTAGATATC TTATTTTTAAATCTC pnp 612913 - 610766 - | polynucleotide phosphorylase/polyadenylase TERM 1002 611101 - 611127 + g 79 -6.6 -4.62336 | GAGCCATTACCGCTT TCGCCGCA TTATTATCGGT TGCGGCGA TTTTTACGGTACCGT TERM 1003 613435 - 613416 - g 84 -2.8 -5.63645 | gap 1, opp_overlap 613420 613427, overlap 613417 GCAAAATATAAAAAA TCCGC-ACG TAC CGTCGGGGA CGTGTTAGGTAAATT TERM 1004 613495 - 613505 + G 71 -4.6 -4.65078 | opp_overlap 613482 613487, overlap 613487 AAGCAATGGTGCTCA TGGC GCA GCCG TTTTCTTACCGCTAT TERM 1005 614020 - 613974 - g 71 -4.5 -4.61482 | gap 2 GTGTGGAAAAAAGAA GACGGAGAAATTGTGATTTCGGC ATT GCCGCA-TCA-AGCTTCACCGTC AAAAGTGATTGAGCA parC 613251 - 615461 + | DNA topoisomerase IV subunit A TERM 1006 615478 - 615522 + F 100 -18.9 -5.73563 | opp_overlap 615481, overlap 615481 TATTTTCTCATCAGA CAAGCGGTCAAATTTCGTAAA AAC TTTGCGGAATTTGACCGCTTC TTTTTTTGATTTCGT TERM 1007 615481 - 615519 + F 100 -20.6 -4.90519 | opp_overlap 615481, overlap 615478 TTTCTCATCAGACAA GCGGTCAAATTTCGTAAA AAC TTTGCGGAATTTGACCGC TTCTTTTTTTGATTT TERM 1008 615519 - 615481 - f 100 -16.2 -3.54475 | opp_overlap 615478 615481 TTTCTCATCAGACAA GCGGTCAAATTTCGTAAA AAC TTTGCGGAATTTGACCGC TTCTTTTTTTGATTT TERM 1009 615754 - 615766 + G 71 -3.4 -5.00412 | overlap 615748 GAGCTTTTAGAAAGT GATC TTATT GATC TTTTTCGTTATGTTT mukF 615601 - 616932 + | condesin subunit F mukE 617012 - 617725 + | condesin subunit E mukB 617746 - 622236 + | cell division protein MukB TERM 1010 622248 - 622294 + F 100 -9.5 -5.00884 | opp_overlap 622249 622252 622263, overlap 622252 ATAAAGCGTGAACTT ACAAGCGGTCAGAAATTGCAA AAAAG TTGCAAAATCTGACCGCTTAA TTTTTTAGGAAGAAT TERM 1011 622293 - 622249 - f 95 -15.2 -2.54387 | opp_overlap 622248 622252, overlap 622252 622263 TAAAGCGTGAACTTA CAAGCGGTCAGAAATTGCAA AAAAG TTGCAAAATCTGACCGCTTA ATTTTTTAGGAAGAA TERM 1012 622252 - 622290 + F 100 -14.7 -3.93166 | opp_overlap 622249 622252 622263, overlap 622248 AGCGTGAACTTACAA GCGGTCAGAAATTGCAA AAAAG TTGCAAAATCTGACCGC TTAATTTTTTAGGAA TERM 1013 622290 - 622252 - f 100 -14.7 -3.42056 | opp_overlap 622252 622248, overlap 622249 622263 AGCGTGAACTTACAA GCGGTCAGAAATTGCAA AAAAG TTGCAAAATCTGACCGC TTAATTTTTTAGGAA APJL_0575 622313 - 623488 + | sugar efflux transporter TERM 1014 623530 - 623505 - T 100 -13.5 -4.79352 | opp_overlap 623510, overlap 623510 TTAGGCACAATAAAA GAAAATGGGAT TGTT ATCCCATTTTC AGTTACCGCTTATTT TERM 1015 623525 - 623510 - T 95 -7.6 -5.31091 | opp_overlap 623510, overlap 623505 CACAATAAAAGAAAA TGGGAT TGTT ATCCCA TTTTCAGTTACCGCT TERM 1016 623510 - 623525 + T 78 -7.6 -4.27584 | opp_overlap 623505 623510 CACAATAAAAGAAAA TGGGAT TGTT ATCCCA TTTTCAGTTACCGCT APJL_0576 625279 - 623540 - | putative sulphatase APJL_0577 625503 - 625282 - | hypothetical protein TERM 1017 625541 - 625525 - H 84 -3.1 -5.63504 | overlap 625527 AATTTCATAAAAAAA TATTAAT AAT ATTAACA TAAAATTTAATGGAG TERM 1018 626087 - 626110 + G 79 -6.8 -4.63218 | opp_overlap 626087 626088 626090, overlap 626088 ATGCCGAATAATGAA TGATTCCGAA TTTA TTTGGAATCG TTTTGTTGAAGAAGG APJL_0578 625713 - 626291 + | putative HTH-type transcriptional regulator TERM 1019 626457 - 626447 - g 75 -2.4 -5.27477 | ATTGCAAGTAAAAAA GCGG AAG CGGC GGCAAATATGCCGGA TERM 1020 627278 - 627263 - g 71 -9 -3.30124 | CTTTATGTCTTACAA CCGCTT TCCG AAGCGG ATAAACAATTAGCGA APJL_0579 626324 - 627529 + | membrane-fusion protein TERM 1021 627922 - 627958 + G 79 -10.9 -2.99204 | overlap 627924 627928 TATTGACGATCCGTC CATTAGCGTTTCGTCCG GTT CGAACGATGCGTTAATG TATATCCGTTTCGTT TERM 1022 628942 - 628954 + G 70 -5.5 -4.42464 | GTTTGCACTAACGCT TGCCG GTG CGGTA TTTATTTCAGGGATT APJL_0580 627542 - 630661 + | acriflavine resistance protein TERM 1023 630681 - 630701 + F 100 -8.2 -5.53079 | opp_overlap 630681 TTAAATGGTTGAAAA GCTCCGTC AATAC GTCGGAGC TTTTTTATATCTTTT TERM 1024 630701 - 630681 - f 81 -8.9 -4.12942 | opp_overlap 630681 TTAAATGGTTGAAAA GCTCCGTCA ATA CGTCGGAGC TTTTTTATATCTTTT glmU 630879 - 632243 + | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 1025 632319 - 632268 - T 100 -14.6 -5.28983 | opp_overlap 632271 632272, overlap 632272 632275 CTCAAAATATAAAAA TTAACAAGCGGTCGTTTTCGCAGA TTTT TTTGCAAAAACGACCGCTTGCTTT TTTGATATTTATATG TERM 1026 632271 - 632316 + T 100 -18.5 -5.34055 | opp_overlap 632268 632272 632275, overlap 632272 AAAATATAAAAATTA ACAAGCGGTCGTTTTCGCAGA TTTT TTTGCAAAAACGACCGCTTGC TTTTTTGATATTTAT TERM 1027 632315 - 632272 - T 100 -22 -3.95047 | opp_overlap 632271 632272, overlap 632268 632275 AAATATAAAAATTAA CAAGCGGTCGTTTTCGCAGA TTTT TTTGCAAAAACGACCGCTTG CTTTTTTGATATTTA TERM 1028 632272 - 632315 + T 100 -22 -3.77993 | opp_overlap 632272 632268 632275, overlap 632271 AAATATAAAAATTAA CAAGCGGTCGTTTTCGCAGA TTTT TTTGCAAAAACGACCGCTTG CTTTTTTGATATTTA TERM 1029 632312 - 632275 - T 100 -17.9 -4.0498 | opp_overlap 632272 632271, overlap 632272 632268 TATAAAAATTAACAA GCGGTCGTTTTCGCAGA TTTT TTTGCAAAAACGACCGC TTGCTTTTTTGATAT APJL_0582 632667 - 632350 - | hypothetical protein APJL_0583 633291 - 632671 - | exopolysaccharide biosynthesis protein TERM 1030 634877 - 634902 + G 74 -10.5 -2.6914 | opp_overlap 634876 634879, overlap 634876 634879 GTTGCAAGACGCAAT CACCGATTTCA ATAA TGAATTCGGTG CTTATGTAAGCGGTC TERM 1031 635002 - 634983 - g 77 -10.7 -2.80344 | opp_overlap 634983, overlap 634964 634982 GCGTTACGCAACAAC CCGCCGA GTGCAA TCGGCGG TTTCAACGTAGCTCA TERM 1032 634983 - 635002 + G 84 -10.7 -3.57792 | opp_overlap 634964 634982 634983 GCGTTACGCAACAAC CCGCCGA GTGCAA TCGGCGG TTTCAACGTAGCTCA yhxB 633585 - 635243 + | phosphomannomutase TERM 1033 635259 - 635276 + T 88 -11.3 -3.73294 | opp_overlap 635259 TTAGCATAAAGAAAA GCCCTGT GTTT ACAGGGC TTTGAGCTATTTTTG TERM 1034 635276 - 635259 - T 100 -11.3 -5.02323 | opp_overlap 635259 TTAGCATAAAGAAAA GCCCTGT GTTT ACAGGGC TTTGAGCTATTTTTG TERM 1035 635340 - 635364 + T 76 -10.7 -2.62184 | opp_overlap 635339 TTATTCCCACTCAAT CGTTGCAGGCG GTT TGCCTGAAACG TCATATACCACGCGA guaA 636896 - 635325 - | bifunctional GMP synthase/glutamine amidotransferase protein APJL_0586 637225 - 636911 - | hypothetical protein TERM 1036 637200 - 637217 + g 71 -2.1 -5.15526 | gap 1, opp_overlap 637200, overlap 637192 CCCGATAGTAATAAT GTTA-CTA ATG TAGATAAC TTTTTCATTTTATAT TERM 1037 637309 - 637263 - R 100 -16.8 -3.82604 | opp_overlap 637267, overlap 637264 TTATTTAAGGAATAA TCAAGCGGTCAAATTTTGCAAA AAA TTGGCAAAATCCGACCGCTTGT CAAGATTAACCCATA TERM 1038 637308 - 637264 - R 100 -20.3 -2.89081 | opp_overlap 637267, overlap 637263 TATTTAAGGAATAAT CAAGCGGTCAAATTTTGCAAA AAA TTGGCAAAATCCGACCGCTTG TCAAGATTAACCCAT TERM 1039 637267 - 637305 + r 85 -11.8 -3.33261 | opp_overlap 637264 637263 TTAAGGAATAATCAA GCGGTCAAATTTTGCAAA AAA TTGGCAAAATCCGACCGC TTGTCAAGATTAACC guaB 638778 - 637315 - | inositol-5-monophosphate dehydrogenase TERM 1040 638370 - 638360 - G 74 -6.8 -4.39002 | AAATCTCTTACAAAA CGTG TAT CACG TCCGGTAATAATACC TERM 1041 638501 - 638481 - G 70 -7.5 -3.89501 | opp_overlap 638492, overlap 638482 TAAGATCCGGAGAAA CCGTTACCG GCT CGGAAACGA TACCGCTTTCGAATT TERM 1042 638877 - 638888 + H 76 -4.4 -5.11112 | TAAATTTGAATTTTG GCAA ACGA TTGC TTTTTGTTGAAATTT TERM 1043 639303 - 639291 - g 71 -9.1 -3.32498 | TATTTTAGATATGAA CCCGA TTG TCGGG GTGGACTTTCTACAA TERM 1044 639512 - 639545 + G 80 -9 -3.91984 | CTAAAGGCAGTTTTG TCGTCAAAGTGTTC CAAGGT GAAGGCTTTGACGA TTATTTAAGAGATAT ftsJ 639031 - 639657 + | 23S rRNA methyltransferase J TERM 1045 639663 - 639701 + F 74 -8.2 -3.65046 | opp_overlap 639663 TAAAGGTTGAGATAA GCGGTCAAGTTTTGCAGA AAT TTTGTAAAATCCGACCGC TTGTTAAAATGAAGA TERM 1046 640707 - 640728 + G 80 -10.2 -3.56643 | opp_overlap 640722 CTCGTCCGGGACGTT TCGACCGT CAAGTA ACGGTCGA TTTACCGAATGTAAA ftsH 639761 - 641683 + | cell division protein TERM 1047 641706 - 641729 + F 100 -13.2 -5.36441 | opp_overlap 641706 TCATAAATGAATAAA GCCGAGAAGC GAAA GTTTCTCGGC TTTTTTGTGTAAGAA TERM 1048 641729 - 641706 - f 95 -11 -4.42976 | opp_overlap 641706 TCATAAATGAATAAA GCCGAGAAGC GAAA GTTTCTCGGC TTTTTTGTGTAAGAA tyrP1 641990 - 643135 + | tyrosine-specific transport protein TERM 1049 643786 - 643798 + G 71 -3.3 -5.00851 | AATCTGTTTGTTGTT TCAGC CGT GCCGA TTTTCTTTACTTCGT tyrP2 643300 - 644448 + | tyrosine-specific transport protein TERM 1050 644505 - 644457 - f 71 -8.9 -3.19634 | opp_overlap 644462 644502, overlap 644456 644458 AGGTTAAATATAAAT GCCAAGCGGTCAGAAATTGCAGA AAT TTTGCAAATTCTGACCGCTTTTT TATATGATAAAGATG TERM 1051 644504 - 644458 - f 82 -12.4 -2.51057 | opp_overlap 644462 644502, overlap 644457 644456 GGTTAAATATAAATG CCAAGCGGTCAGAAATTGCAGA AAT TTTGCAAATTCTGACCGCTTTT TTATATGATAAAGAT TERM 1052 644462 - 644500 + F 100 -19.8 -5.39721 | opp_overlap 644458 644457 644456 AAATATAAATGCCAA GCGGTCAGAAATTGCAGA AAT TTTGCAAATTCTGACCGC TTTTTTATATGATAA TERM 1053 645252 - 645276 + G 72 -6.3 -4.29176 | opp_overlap 645247, overlap 645247 AGGAATTGAATAGCG CGCAAGCGGTA TTA TTCCGTATGCG TTTTGCCTTACATCT glnD 644555 - 647107 + | PII uridylyl-transferase TERM 1054 647109 - 647131 + T 93 -12 -3.76641 | overlap 647110 647112 AATTGTCGGAGTAGT GTAGAGGGCG TAA CGCCCTCTAA TTTAAGTATTAAGAT TERM 1055 647110 - 647130 + T 100 -15.5 -2.85503 | overlap 647109 647112 ATTGTCGGAGTAGTG TAGAGGGCG TAA CGCCCTCTA ATTTAAGTATTAAGA TERM 1056 647112 - 647128 + T 100 -13.7 -2.974 | overlap 647110 647109 TGTCGGAGTAGTGTA GAGGGCG TAA CGCCCTC TAATTTAAGTATTAA APJL_0593 647538 - 647140 - | hypothetical protein rplM 647844 - 648272 + | 50S ribosomal protein L13 rpsI 648289 - 648684 + | 30S ribosomal protein S9 TERM 1057 648717 - 648749 + F 100 -12.2 -4.95155 | gap 1, opp_overlap 648725, overlap 648725 ATACGAAAGTATTAT CAGCAGAAGGCAGGA TTAT TCCTGCCTTTT-CTG TTTTTATCGTCTGAC TERM 1058 648742 - 648725 - f 82 -11.3 -3.45023 | opp_overlap 648725 648717 GTATTATCAGCAGAA GGCAGGA TTAT TCCTGCC TTTTCTGTTTTTATC TERM 1059 648725 - 648742 + F 100 -11.3 -5.02287 | opp_overlap 648725, overlap 648717 GTATTATCAGCAGAA GGCAGGA TTAT TCCTGCC TTTTCTGTTTTTATC APJL_0596 648806 - 649588 + | hypothetical protein APJL_0597 649588 - 650133 + | hypothetical protein TERM 1060 650608 - 650589 - g 71 -3.4 -5.07486 | opp_overlap 650590 650594 650599, overlap 650590 TAGCTTTAACAAAAA GTCCGGCG ATTG CGGCGGAT TCGCTGCATTATCAA TERM 1061 650599 - 650616 + G 71 -9.1 -3.2964 | opp_overlap 650590 650589, overlap 650590 650594 AAAAAGTCCGGCGAT TGCGGCG GATT CGCTGCA TTATCAAACCGATTT TERM 1062 650981 - 650996 + G 74 -7.6 -3.99374 | AAAATTCTGGCGATT TTTCCG CGTT CGGAAA TTATTATTCATCAAG fieF 650159 - 651082 + | cation-efflux pump FieF TERM 1063 651655 - 651667 + G 82 -3.3 -5.42164 | AGCTTGAAGCGATCA GTGGG GTG CCGAC TTTTTATTATTTATA APJL_0599 651063 - 651833 + | hypothetical protein TERM 1064 651879 - 651908 + F 93 -6.5 -5.60689 | gap 1, opp_overlap 651884, overlap 651884 AAGTTGTATTGAAAC GATAAGGCGAGAGT TAT ATGCTCGCCTT-TC TTTTTTATTGTGTGG TERM 1065 651884 - 651904 + F 93 -7.5 -5.22768 | opp_overlap 651884, overlap 651879 GTATTGAAACGATAA GGCGAGAGT TAT ATGCTCGCC TTTCTTTTTTATTGT APJL_0600 651932 - 653257 + | proton glutamate symport protein TERM 1066 653313 - 653340 + T 85 -11.4 -3.29649 | opp_overlap 653315 653320, overlap 653320 GCTTGCAGCAGAAAA TAGAAAAGGGGC ATTA GCCCCTTTTTTG TTGCTATAGTCGAAT TERM 1067 653338 - 653315 - T 83 -9.6 -3.84183 | opp_overlap 653313 653320, overlap 653320 TTGCAGCAGAAAATA GAAAAGGGGC ATTA GCCCCTTTTT TGTTGCTATAGTCGA TERM 1068 653333 - 653320 - T 100 -9.5 -4.94487 | opp_overlap 653313 653320, overlap 653315 GCAGAAAATAGAAAA GGGGC ATTA GCCCC TTTTTTGTTGCTATA TERM 1069 653320 - 653333 + T 100 -9.5 -5.5353 | opp_overlap 653320 653315, overlap 653313 GCAGAAAATAGAAAA GGGGC ATTA GCCCC TTTTTTGTTGCTATA APJL_0601 654021 - 653359 - | putative NAD(P)H nitroreductase TERM 1070 653788 - 653825 + g 70 -2.6 -5.02074 | overlap 653789 653790 653822 TAAATGACTCATTTC GTGCATCGGGTGCTTG ATACCC CAAGAAACCGGTGCGA TTTTTTCACGAATCG TERM 1071 654352 - 654364 + G 70 -7.7 -3.68619 | GAAGTGCTTTAGACG CCTTG GAT CAAGG TTTAGATGCGTTAGA pheS 654303 - 655289 + | phenylalanyl-tRNA synthetase subunit alpha TERM 1072 655491 - 655509 + G 100 -12.4 -3.60006 | AGAAGTCGATGATGC TGCGCCGG TTG CCGGTGCA TTTAGCGGTGTGGTT pheT 655387 - 657774 + | phenylalanyl-tRNA synthetase subunit beta ihfA 657792 - 658088 + | integration host factor, alpha chain TERM 1073 658129 - 658093 - f 73 -7.4 -4.11304 | gap 1, opp_overlap 658095, overlap 658095 TGAAGGCATAAATAA GACATTCCATA-GCCTC TATT GGGGCTTATGGAATGTT TTTTATAGGTAACCT TERM 1074 658127 - 658095 - f 80 -10 -3.64369 | gap 1, opp_overlap 658095, overlap 658093 AAGGCATAAATAAGA CATTCCATA-GCCTC TATT GGGGCTTATGGAATG TTTTTTATAGGTAAC TERM 1075 658095 - 658127 + F 100 -12.2 -5.28176 | gap 1, opp_overlap 658095 658093 AAGGCATAAATAAGA CATTCCAT-AGCCTC TATT GGGGCTTATGGAATG TTTTTTATAGGTAAC APJL_0605 658148 - 658672 + | lipoprotein TERM 1076 658681 - 658696 + T 76 -6.2 -4.56597 | opp_overlap 658681 TTTATAATGATTTAA TGTGAA GTAG TTCACA TTTTTAAGAAAAAGA TERM 1077 658825 - 658842 + T 100 -8.4 -5.63504 | TTTGCTTTCCGAGTA GCCCCT AAGTTG AGGGGC TTTTTTTATGCCGTT TERM 1078 658986 - 658954 - T 71 -9.1 -3.17392 | opp_overlap 658954 GACTGTTTAATTTAA GGACTGAGTTCTGTA TTG TACAGGGCTCGGTCC TTTTAATTTCACTTG TERM 1079 658954 - 658986 + T 100 -15.7 -4.5852 | opp_overlap 658954 GACTGTTTAATTTAA GGACTGAGTTCTGTA TTG TACAGGGCTCGGTCC TTTTAATTTCACTTG APJL_0606 659292 - 658945 - | transposase APJL_0607 659639 - 659316 - | putative transposase-like protein TERM 1080 659476 - 659458 - G 71 -2.4 -5.09225 | ATCGCACCCAAAAAA TCACGTAA CTT TAACGTAA TACGACGATAGCCGT APJL_0608 660154 - 659645 - | transposase and inactivated derivative bioD1 660946 - 660227 - | dithiobiotin synthetase mlc 662190 - 661000 - | transcriptional regulator/sugar kinase TERM 1081 662159 - 662171 + g 71 -4.1 -4.77165 | AGGCGATAAATTGTG CCTAA GTG TTGGG TTTTATTATCAGAAA TERM 1082 662301 - 662330 + H 95 -11 -4.45168 | CACAACTGTTTTATG TTAATTCTGTGA ATTAGC TCACAGAATTAA TTTATCTTTTAAAAA TERM 1083 662449 - 662421 - g 75 -3.1 -5.1971 | ACGAAAAATTAAAAA CGGTTTGCGAGAA CGC TTGTCGGAAATCG GCAGTGGCATTGGAT TERM 1084 663092 - 663071 - g 71 -4.5 -4.70626 | GAAGAAGCGGAAAAA CGAGATTTA GCAT TAAATTTCG TCGTGAAAGAAAATT rnd 662369 - 663484 + | ribonuclease D lrp 663569 - 664051 + | leucine-responsive transcriptional regulator TERM 1085 664424 - 664436 + G 71 -9.1 -3.25177 | overlap 664422 664420 TTATAGCCGGTTTAG CCGGA CTG TCCGG TGTGATTTTTTCAAA TERM 1086 665176 - 665159 - g 70 -5.6 -4.40601 | overlap 665132 AATCGATAGAAGAAA CCGTTT TCAAGC AAACGG AAGAAACCGAAACGG TERM 1087 665659 - 665639 - g 73 -8.3 -3.73224 | overlap 665644 TTACTCGTTATGAAA TTAAACCGG CTG CCGGTGTAA AAGCGGCGAAAGTAG TERM 1088 665654 - 665644 - g 79 -8.2 -4.10552 | overlap 665639 CGTTATGAAATTAAA CCGG CTG CCGG TGTAAAAGCGGCGAA ftsK 664117 - 666933 + | cell division protein TERM 1089 666966 - 667019 + F 91 -9.9 -4.63932 | gap 1, opp_overlap 666964 666968, overlap 666968 TTATTTTTATAAAGC AAGCGGTTGAATTTTTCCCTAAATTT GCA AACTTTAAGG-AAAATTCGACCGCTC TTTTATTGCCGACTA TERM 1090 667017 - 666968 - f 95 -12.5 -3.60798 | gap 1, opp_overlap 666966 666968, overlap 666964 ATTTTTATAAAGCAA GCGGTTGAATTTTTCCCTAAATTT GCA AACTTTAAGGAAAA-TTCGACCGC TCTTTTATTGCCGAC TERM 1091 666968 - 667017 + F 95 -12.5 -3.93367 | gap 1, opp_overlap 666968 666964, overlap 666966 ATTTTTATAAAGCAA GCGGTTGAATTTTTCCCTAAATTT GCA AACTTTAAGG-AAAATTCGACCGC TCTTTTATTGCCGAC TERM 1092 667485 - 667507 + G 71 -4 -4.77165 | ATACGGCTTCCGGAA CGGGTCAATC TGC GATGGGGCCG TTTTATTGTCCGGCG TERM 1093 667700 - 667683 - g 86 -9.1 -4.37157 | overlap 667670 AACGAGCACAACAAA CCGCTCG CAAT CAAGCGG CGGCTAATAAAATTT APJL_0614 667118 - 667981 + | hypothetical protein TERM 1094 667992 - 668023 + F 75 -8.9 -3.64609 | opp_overlap 667992 668011 GTTAATTCAGATAAA TGGTTTTGTACTA GTAAAA TAGTTCAAAACCA TTTGACATACTTCTC TERM 1095 668023 - 667992 - f 81 -8.9 -4.09108 | opp_overlap 667992, overlap 668011 GTTAATTCAGATAAA TGGTTTTGTACTA GTAAAA TAGTTCAAAACCA TTTGACATACTTCTC aroG 668104 - 669177 + | phospho-2-dehydro-3-deoxyheptonate aldolase APJL_0616 669281 - 669973 + | M22 peptidase-like protein TERM 1096 670021 - 670042 + T 85 -3 -5.86976 | opp_overlap 670014 670021, overlap 670014 AAAAAATATGAGAAA GGTACG CATAAAAAAA CGTACC TTTTTTATTTTGTAA TERM 1097 670402 - 670365 - T 79 -3.5 -5.48623 | opp_overlap 670366, overlap 670366 AAAGATAAAGAAAAA GCGGTTGTTTTCGTAAA AATT TTTGTAAAAACAACCGT TTATAAATTAGATTA TERM 1098 670401 - 670366 - T 71 -7 -3.85514 | opp_overlap 670366, overlap 670365 AAGATAAAGAAAAAG CGGTTGTTTTCGTAAA AATT TTTGTAAAAACAACCG TTTATAAATTAGATT TERM 1099 670366 - 670401 + T 83 -9.2 -3.98484 | opp_overlap 670366 670365 AAGATAAAGAAAAAG CGGTTGTTTTCGTAAA AATT TTTGTAAAAACAACCG TTTATAAATTAGATT tdk 670906 - 670415 - | thymidine kinase TERM 1100 671017 - 671036 + r 88 -10.8 -3.65812 | opp_overlap 671017 TATACAAATAAAAAA CGGCTAAT GCAA ATTAGCCG TTCTATTGAAAAGGA TERM 1101 671036 - 671017 - R 100 -10.8 -5.76237 | opp_overlap 671017 TATACAAATAAAAAA CGGCTAAT GCAA ATTAGCCG TTCTATTGAAAAGGA APJL_0618 671274 - 671056 - | hypothetical protein TERM 1102 671569 - 671548 - g 85 -7.2 -4.85599 | overlap 671550 TCGAGGTGATAAAAA TGCCGCCG ACGATG CGGCGGTA AAAGCGATGCGCTTA TERM 1103 671567 - 671550 - g 71 -9.8 -2.70044 | overlap 671548 GAGGTGATAAAAATG CCGCCG ACGATG CGGCGG TAAAAGCGATGCGCT glpX 671459 - 672457 + | fructose 1,6-bisphosphatase II TERM 1104 672493 - 672472 - T 100 -8.8 -5.16237 | opp_overlap 672467 672472 AATCCCAGTAAAAAA GTCGTATC TTTTCC GATACGAC TTTTGCATTTTAGGT TERM 1105 672472 - 672493 + T 90 -8.8 -4.43272 | opp_overlap 672472, overlap 672467 AATCCCAGTAAAAAA GTCGTATC TTTTCC GATACGAC TTTTGCATTTTAGGT APJL_0620 673293 - 672520 - | hypothetical protein TERM 1106 672793 - 672779 - G 70 -10 -2.56596 | opp_overlap 672775, overlap 672775 TTTCGGATTAATTTA TGCGGA TAA TCCGCA ATAAATTCATGGCAC APJL_0621 675303 - 673381 - | putative ABC transporter ATP-binding protein TERM 1107 675065 - 675041 - G 86 -5.8 -5.26119 | gap 1 CGTTGAAAAATAAAA CCGAACTTACG CTGA CGTAAAT-CGG AAAGTTCGTCGGACG APJL_0622 676847 - 675447 - | two-component sensor protein TERM 1108 676895 - 676877 - R 100 -10.3 -5.29885 | opp_overlap 676877 AATTTAAAAAGAAAA TCCCTCG ATAAG CGAGGGA TTTCAAAGAAAAGGA TERM 1109 676877 - 676895 + r 82 -10.3 -3.53012 | opp_overlap 676877 AATTTAAAAAGAAAA TCCCTCG ATAAG CGAGGGA TTTCAAAGAAAAGGA cpxR 677586 - 676912 - | transcriptional regulatory protein CpxR mazG 678459 - 677680 - | MazG protein APJL_0625 678593 - 678694 + | hypothetical protein accD 678798 - 679691 + | acetyl-CoA carboxylase subunit beta TERM 1110 679713 - 679729 + F 100 -12.3 -4.85782 | opp_overlap 679708 679713 TTAAGCATAACTTAA GCCACGT AAT ACGTGGC TTTCTTTTTGAGAAC TERM 1111 679729 - 679713 - f 87 -12.3 -3.2653 | opp_overlap 679713, overlap 679708 TTAAGCATAACTTAA GCCACGT AAT ACGTGGC TTTCTTTTTGAGAAC TERM 1112 680915 - 680897 - g 71 -4.6 -4.72272 | overlap 680898 GCGGTCTATCAAAAA CTGGCAAA TGT TTTACCAA ATTCGACCGCTTGTT folC 679748 - 681052 + | folylpolyglutamate synthase/dihydrofolate synthase TERM 1113 681225 - 681250 + F 100 -13.5 -5.23292 | CAACCAGTTTTAAGG CTCACAGTTTT GTTT AAAACTGTGAG TTTTGTTTTATATAG TERM 1114 681331 - 681352 + F 81 -3 -5.64274 | gap 2, opp_overlap 681331, overlap 681331 681331 ACAAACCGCTTAAAG CCCC--ACGG TTTT CCGTCTGGGG TTTTTTTGTGGCTGG TERM 1115 681389 - 681404 + F 81 -2.5 -5.77988 | ATAATCGTATCAAAA GAGCT GGTTAA GGCTC TTTTTTTATATCTGT APJL_0628 681436 - 681897 + | hypothetical protein nusA 681914 - 683395 + | transcription elongation factor NusA TERM 1116 683828 - 683810 - g 84 -3.8 -5.5074 | overlap 683813 GAAGCGAAGAAAAAA GAAGAAGC TGA ACTTCGTC GTAAACAAGAAGAAT TERM 1117 683825 - 683813 - g 71 -4.1 -4.81306 | overlap 683810 GCGAAGAAAAAAGAA GAAGC TGA ACTTC GTCGTAAACAAGAAG infB 683417 - 685942 + | translation initiation factor IF-2 TERM 1118 685960 - 686015 + F 100 -16.7 -4.74504 | gap 2, opp_overlap 685963 TCGTTTCATTACTCA CAAGCGGTCAGATTTCTGCATAAATTT GCAA AAATTTA-GTGGAAA-CTGACCGCTTG TTTTTGGCTTAACAT TERM 1119 686012 - 685963 - f 70 -8.2 -3.37796 | gap 2, opp_overlap 685960 TTTCATTACTCACAA GCGGTCAGATTTCTGCATAAATTT GCAA AAATTTA-GTGGAAA-CTGACCGC TTGTTTTTGGCTTAA TERM 1120 686072 - 686094 + F 77 -8.4 -3.92659 | overlap 686073 ATCCCAACAAAATTT TGAGGCGCTT TTG GAGTGCCTCG TTTGCATTTTGGAGA TERM 1121 686073 - 686093 + F 76 -9.7 -2.95113 | overlap 686072 TCCCAACAAAATTTT GAGGCGCTT TTG GAGTGCCTC GTTTGCATTTTGGAG rbfA 686114 - 686497 + | ribosome-binding factor A TERM 1122 686537 - 686519 - g 71 -3 -5.02476 | opp_overlap 686519 686520, overlap 686520 AGACCTCGTAAAAAA GGGCGTGA TGT TCACGGCG TATTTTTATTAGATA TERM 1123 686611 - 686597 - g 72 -7.8 -3.76413 | TTGCAAAAGGTTAAA CGCCTG TTT CAAGCG AATAAAGCGGGGCAT truB 686498 - 687415 + | tRNA pseudouridine synthase B TERM 1124 688516 - 688526 + G 71 -6.8 -4.08216 | CAGCATCGGTAAGTT TGCG GAT CGCA TTTTAGAAAGCGTGG APJL_0633 687461 - 688549 + | membrane-bound lytic murein transglycosylase B TERM 1125 688597 - 688583 - f 70 -8.6 -2.99268 | overlap 688582 AGATACGTAAATAAG CGGTAA TTT TTACCG AATAAATTGCAATTT APJL_0634 688678 - 688863 + | hypothetical protein TERM 1126 688872 - 688891 + T 100 -7.8 -5.60993 | opp_overlap 688872 688867 688874 AGCATAATGAGAAAA GTCCTGTG ATAT CGCAGGGC TTTTTTTGTGGCAAA TERM 1127 688962 - 688945 - T 100 -11.3 -5.67967 | opp_overlap 688937 688945 ATCAGCATAAAAAAA TGCCCTC ATTT GAGGGCA TTTCGCTATTTGTAA TERM 1128 688945 - 688962 + T 89 -11.3 -3.83324 | opp_overlap 688945, overlap 688937 ATCAGCATAAAAAAA TGCCCTC ATTT GAGGGCA TTTCGCTATTTGTAA pta 691121 - 688983 - | phosphate acetyltransferase TERM 1129 691006 - 691031 + g 70 -2.7 -5.06414 | overlap 691004 ATAGGTTGCGCGATT GGTTTTAAA AAGCCGAC TTTAGAACC TTTTTGTTCCAAAGC TERM 1130 691169 - 691153 - R 100 -12.3 -4.49756 | opp_overlap 691147 TGTGAAATAGTAAAA GGGCAGA ATA TCTGCCC TTGGAAATTATAGTG ackA 692385 - 691177 - | acetate kinase TERM 1131 693010 - 693000 - g 91 -8.2 -4.62203 | opp_overlap 692999 GCTAAACAAGGAAAA GCCG ATC CGGC AATTGCTACTTTAAA TERM 1132 693234 - 693223 - g 71 -4.4 -4.86385 | ACGGTCAAAAACAAA CGAT TAAA ATCG GCTATATCGGCTTTG ushA 692682 - 694658 + | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 1133 694912 - 694923 + T 76 -5.8 -4.60041 | overlap 694922 TTCTTCAACCCGTCA TCCG TTTT CGGA TTTTTAAAAATCGCT TERM 1134 695545 - 695567 + T 100 -10.6 -5.06103 | opp_overlap 695545 TTAAGAAAACAAAAA CCCCAATAGT TTT ACTACTGGGG TTTTTTAAAGCTTAT TERM 1135 695567 - 695545 - T 100 -12.8 -5.62288 | opp_overlap 695545 TTAAGAAAACAAAAA CCCCAATAGT TTT ACTACTGGGG TTTTTTAAAGCTTAT ompP2B 696678 - 695602 - | outer membrane protein P2-like protein TERM 1136 696491 - 696502 + g 85 -2.2 -5.77571 | CCAGCATTACGTAAT TGTG AATG CGCA TTTTTATTTTTTACT APJL_0640 697136 - 697669 + | hypothetical protein TERM 1137 697666 - 697690 + T 81 -8.6 -4.05027 | opp_overlap 697665 697667 697670, overlap 697667 697670 AAAACTATCTAAAAT ATAAGGACGC TAATT GCGTCCTTAG TTATTCTTGGTTATA TERM 1138 697667 - 697689 + T 85 -12.1 -3.01932 | opp_overlap 697665 697667 697670, overlap 697666 697670 AAACTATCTAAAATA TAAGGACGC TAATT GCGTCCTTA GTTATTCTTGGTTAT TERM 1139 697689 - 697667 - T 93 -12.1 -3.72347 | opp_overlap 697667 697666 697670, overlap 697665 697670 AAACTATCTAAAATA TAAGGACGC TAATT GCGTCCTTA GTTATTCTTGGTTAT TERM 1140 697670 - 697686 + T 78 -9.4 -3.62857 | opp_overlap 697667 697665 697670, overlap 697667 697666 CTATCTAAAATATAA GGACGC TAATT GCGTCC TTAGTTATTCTTGGT TERM 1141 697686 - 697670 - T 83 -9.4 -3.97622 | opp_overlap 697670 697667 697666, overlap 697667 697665 CTATCTAAAATATAA GGACGC TAATT GCGTCC TTAGTTATTCTTGGT galU 698588 - 697701 - | UTP-glucose-1-phosphate uridylyltransferase TERM 1142 697904 - 697915 + g 73 -5.8 -4.57755 | GGATCTCATCGCCTA CACC AACC GGTG TTTTCTCTAATAAAT TERM 1143 698617 - 698605 - R 73 -9.1 -3.34501 | opp_overlap 698604 698605 ACATAATCCTTACAA GGTGC ATA GCACC GTTTAAATCAAATAT TERM 1144 698654 - 698677 + r 85 -12.4 -3.00138 | opp_overlap 698654, overlap 698651 698656 GTATCACATAATAAA GACCGCTCGC ATAA GCAAGCGGTC TAATTTCATCTAAAT TERM 1145 698677 - 698654 - R 100 -14.6 -4.41114 | opp_overlap 698654 698651 698656 GTATCACATAATAAA GACCGCTCGC ATAA GCAAGCGGTC TAATTTCATCTAAAT TERM 1146 698656 - 698675 + r 74 -9.2 -3.05159 | opp_overlap 698654, overlap 698654 698651 ATCACATAATAAAGA CCGCTCGC ATAA GCAAGCGG TCTAATTTCATCTAA manB 700059 - 698701 - | phosphomannomutase csrA 700288 - 700094 - | carbon storage regulator alaS 702991 - 700367 - | alanyl-tRNA synthetase TERM 1147 701616 - 701628 + g 70 -7.7 -3.66921 | opp_overlap 701615 TCTAGATTATCATAG CCGAT AAA ATCGG TTTGACCTTCCACTT TERM 1148 703166 - 703130 - R 100 -12.6 -5.18357 | gap 1, opp_overlap 703129 703128 703133 TAATTTATTAAAAAA CAACCGCTTGAAAAGCT AAAG AACTTTT-AAGCGGTTG AGTTTAAGGTTATTT uspA 703642 - 703217 - | universal stress protein A TERM 1149 703417 - 703440 + g 71 -9.6 -2.94598 | opp_overlap 703406 703417, overlap 703416 703435 AAACCGGATAATTCA CTTTAGCCGA TAAT TCGGCTAACG CTTTAGTGGTTTCTT TERM 1150 703759 - 703741 - H 70 -3.2 -5.02074 | opp_overlap 703732 703743, overlap 703743 TCATTTTTGAAAAAA CATTTCAA TGT CTGAAATA TTTTTTAATTCGGAG hlyX 703906 - 704673 + | fumarate/nitrate reduction transcriptional regulator TERM 1151 704715 - 704692 - T 100 -11.2 -5.69262 | opp_overlap 704692 TTATAAAAACAAAAA TACCACTATT TTCT AATAGTGGTA TTTTTTTGTTCGGAA TERM 1152 704692 - 704715 + T 100 -11.2 -5.7946 | opp_overlap 704692 TTATAAAAACAAAAA TACCACTATT TTCT AATAGTGGTA TTTTTTTGTTCGGAA sspB 705188 - 704772 - | ClpXP protease specificity-enhancing factor sspA 705832 - 705188 - | stringent starvation protein A purE 706051 - 706545 + | phosphoribosylaminoimidazole carboxylasecatalytic subunit APJL_0650 706555 - 707520 + | L-asparaginase purK 707630 - 708718 + | phosphoribosylaminoimidazole carboxylase ATPase subunit aspC 708850 - 710046 + | aromatic amino acid aminotransferase TERM 1153 710064 - 710121 + T 82 -7.8 -4.46215 | opp_overlap 710064 ACTATTTTGGTAAAA CCACGGACTACACAGAATACACGGAA AATTTA TTCTGTGAACACTATGTAGTTTGTGG TTATTTTTACGTATA pepP 711516 - 710230 - | Xaa-Pro aminopeptidase TERM 1154 711638 - 711617 - R 100 -8.7 -5.00616 | opp_overlap 711619, overlap 711619 TTTTCCTCTAAAAAA TAGGCACGA AAAT TCGTGCCTT ATTATTTAATTCACT TERM 1155 711636 - 711619 - R 89 -11.3 -4.13561 | opp_overlap 711619, overlap 711617 TTCCTCTAAAAAATA GGCACGA AAAT TCGTGCC TTATTATTTAATTCA TERM 1156 711619 - 711636 + r 89 -11.3 -4.15884 | opp_overlap 711619 711617 TTCCTCTAAAAAATA GGCACGA AAAT TCGTGCC TTATTATTTAATTCA APJL_0654 714661 - 711644 - | type III restriction-modification system restriction subunit TERM 1157 713124 - 713137 + g 70 -5.3 -4.45771 | opp_overlap 713124 GTTTTCTCACCAAAA GAAAG TAAT CTTTC TTTGTCTTTTAAAAT TERM 1158 714441 - 714473 + g 78 -4.4 -5.16132 | gap 2 AAAGGTAAATTTTGG TTTGCTTGC-A-CGTT TTG AATGTTGGCAAGCAAA TTTTGTTTTACTGTG APJL_0655 716537 - 714681 - | type III restriction-modification system methyltransferase TERM 1159 715756 - 715776 + g 76 -2.6 -5.36441 | opp_overlap 715756 GTCCTTGGTAATCTA TTCAAAGT TAAAT ACTCTGAA TTTTTTGTATAACAA TERM 1160 716511 - 716521 + g 70 -5.4 -4.4874 | TTGTGCTGTTAAGTC TGCA CTG TGCA TTTTGAGTTTTTGCA APJL_0656 717244 - 716552 - | hypothetical protein APJL_0657 720522 - 717247 - | hypothetical protein TERM 1161 720651 - 720613 - R 86 -9.2 -4.27584 | opp_overlap 720617, overlap 720617 ACTCGCAACGGAAAA TTCAGTTTAATTTAAGAT ACT ATCGTAAATTAAACTTAA ATATACCAAACTGGC TERM 1162 720617 - 720647 + r 77 -10 -3.12351 | opp_overlap 720613 720617 GCAACGGAAAATTCA GTTTAATTTAAGAT ACT ATCGTAAATTAAAC TTAAATATACCAAAC TERM 1163 720647 - 720617 - R 75 -10 -2.77861 | opp_overlap 720617, overlap 720613 GCAACGGAAAATTCA GTTTAATTTAAGAT ACT ATCGTAAATTAAAC TTAAATATACCAAAC APJL_0658 721871 - 720648 - | hypothetical protein TERM 1164 721917 - 721879 - R 86 -8.5 -4.37534 | AAATTCATAGGAAAA TTCAGTTTAATTTAAGA TATTG TCGTAAATTAAACTAAA AAATATGATAAAAGT TERM 1165 721943 - 721979 + r 100 -10.5 -4.74706 | opp_overlap 721943 AAAGTAAAGAAAAAA TTAGTTTAATTTAAGGT ATA ATCGTAAATTAAACTAA TTTTTGGGTGTTGAG TERM 1166 721979 - 721943 - R 100 -8.3 -5.74086 | opp_overlap 721943 AAAGTAAAGAAAAAA TTAGTTTAATTTAAGGT ATA ATCGTAAATTAAACTAA TTTTTGGGTGTTGAG APJL_0659 722396 - 722007 - | hypothetical protein APJL_0660 722657 - 722397 - | hypothetical protein TERM 1167 722818 - 722796 - H 100 -13.5 -3.54475 | opp_overlap 722792 CCGCTTATTAGATAA CTCTCTCCC CTTGT GGGAGAGAG ACAGATTTGAGCAAA TERM 1168 723704 - 723689 - g 70 -2.6 -5.04082 | CAAAGAAGAACAAAA TTTCCT AGAT AAGAAA TTAAGAGAACAACAT APJL_0661 723003 - 723839 + | hypothetical protein TERM 1169 723849 - 723864 + T 81 -8.2 -4.22678 | opp_overlap 723849 AAATAATTAATTAAA GCCCGG CTAT TCGGGC TTTCTATTAGATCTC TERM 1170 723864 - 723849 - T 76 -7.5 -4.05045 | opp_overlap 723849 AAATAATTAATTAAA GCCCG GCTATT CGGGC TTTCTATTAGATCTC uvrB 725892 - 723871 - | excinuclease ABC subunit B TERM 1171 724916 - 724932 + g 70 -5.7 -4.36914 | opp_overlap 724881, overlap 724919 TAGTCGAATAATGTC GGAGGCG GTT CGCCCTC TTTTCTGCCCGACAG TERM 1172 725032 - 725046 + g 70 -2.9 -4.98352 | overlap 725031 GCGTTGAGTAATACG TTGTT CTTCC AACAA TTTATTTTCTTTGAT TERM 1173 726509 - 726496 - g 71 -6.7 -4.10429 | opp_overlap 726495 726504 AATTACGCGCTAAAA TTCCG ACGG CGGAA GTTACTCCCGAATTA APJL_0663 726069 - 726881 + | lipoprotein precursor TERM 1174 726946 - 726934 - g 71 -3.4 -5.02074 | opp_overlap 726944 TGATTTTCTAAAAAA TACC GCATT GGTA GGAGCTGGCTTATTG TERM 1175 726944 - 726972 + G 100 -11 -4.55798 | opp_overlap 726934 AAAAATACCGCATTG GTAGGAGCTGGC TTATT GTCGGCTCCTGC TTTTGCTTTAGAATC ywbN 726896 - 728086 + | putative peroxidase YwbN precursor TERM 1176 728509 - 728521 + G 75 -9.1 -3.65827 | opp_overlap 728503 728509 TTAAGCAAATCAGAA TGGCG GCA CGCCA TTTCGGTAAAAATTG TERM 1177 728521 - 728509 - g 75 -9.1 -3.65036 | opp_overlap 728509, overlap 728503 TTAAGCAAATCAGAA TGGCG GCA CGCCA TTTCGGTAAAAATTG APJL_0665 728097 - 728717 + | high-affinity Fe2+/Pb2+ permease TERM 1178 728754 - 728728 - T 100 -13.8 -4.10781 | opp_overlap 728733, overlap 728733 AATAATTCAGATAAA GCAAAGGGCGTT TAA AACGCCCTTTTC CCTTAAAACAAATCC TERM 1179 728749 - 728733 - T 93 -12.3 -4.18042 | opp_overlap 728733, overlap 728728 TTCAGATAAAGCAAA GGGCGTT TAA AACGCCC TTTTCCCTTAAAACA TERM 1180 728733 - 728749 + T 93 -12.3 -4.27316 | opp_overlap 728733 728728 TTCAGATAAAGCAAA GGGCGTT TAA AACGCCC TTTTCCCTTAAAACA trpH 729575 - 728757 - | metal-dependent phosphoesterase APJL_0667 730169 - 729579 - | Mug protein sbcB 731730 - 730186 - | exonuclease I TERM 1181 730639 - 730627 - G 75 -5.5 -4.82901 | TGCCGGTGAGAAAAA GCCGT CAT ACAGC GTGGTTTCCACATTC TERM 1182 731620 - 731599 - G 85 -7.3 -4.77165 | opp_overlap 731601, overlap 731577 731601 TTGCTTACAATAAAA CATCACCGG CTCA CCGATGATA TTAAAATCACTATCG TERM 1183 731618 - 731601 - G 74 -7.7 -4.00512 | opp_overlap 731601, overlap 731577 731599 GCTTACAATAAAACA TCACCGG CTCA CCGATGA TATTAAAATCACTAT TERM 1184 731661 - 731645 - G 72 -9.4 -3.14051 | overlap 731643 CTATCGGTACGAATA CCGGCA AACTG TGCCGG ACGATCTAACGCCGG TERM 1185 731857 - 731832 - R 100 -10.4 -5.60993 | GCGGGCATAAAAAAA CCCGGCACCA AGAAAG CGATGCCGGG GGAGGTCTTACCTAA eriC 733252 - 731972 - | chloride channel protein TERM 1186 732328 - 732306 - G 70 -7.6 -3.57792 | overlap 732308 GCACCTATTGTTAAA GACGGCGTAA ATA TTCCGCCGGC AATACCCGTCCAATA TERM 1187 732326 - 732308 - G 71 -8.8 -3.36694 | overlap 732306 ACCTATTGTTAAAGA CGGCGTAA ATA TTCCGCCG GCAATACCCGTCCAA asnS 733586 - 734989 + | asparaginyl-tRNA synthetase TERM 1188 735007 - 735028 + T 100 -13.1 -4.2349 | opp_overlap 735007 GAGACTAACAAAAAA GGGCGAATA ATCT TATTCGCCC TTTTGCATATAAGCG TERM 1189 735028 - 735007 - T 100 -13.1 -5.5353 | opp_overlap 735007 GAGACTAACAAAAAA GGGCGAATA ATCT TATTCGCCC TTTTGCATATAAGCG TERM 1190 735079 - 735041 - T 82 -10.4 -3.48276 | opp_overlap 735041, overlap 735051 CCCTTTTGCATATAA GCGGTCAAAATTTGCAAA AAA TCAGCAAAATTTAACCGC TTGTTGAACTATCCT APJL_0671 736094 - 735093 - | hypothetical protein TERM 1191 736163 - 736146 - R 100 -11.3 -5.69262 | overlap 736156 GTAGAAAAACAAAAA GGGCGTA AGAT TACGCCC TCCGCAAAATTAGAA APJL_0672 736744 - 736181 - | hypothetical protein efp 736822 - 737460 + | elongation factor P TERM 1192 737527 - 737477 - f 93 -12 -3.82191 | opp_overlap 737482, overlap 737482 CTAATTTTATAAGAA TTTAAGCGGTCGAATTTCTTGCAA ATT TTGCAAACAATTCGACCGCTTTTT TATTTCTCTCTGTTT TERM 1193 737522 - 737482 - f 100 -20.7 -3.31443 | opp_overlap 737482, overlap 737477 TTTATAAGAATTTAA GCGGTCGAATTTCTTGCAA ATT TTGCAAACAATTCGACCGC TTTTTTATTTCTCTC TERM 1194 737482 - 737522 + F 100 -18.5 -5.76237 | opp_overlap 737482 737477 TTTATAAGAATTTAA GCGGTCGAATTTCTTGCAA ATT TTGCAAACAATTCGACCGC TTTTTTATTTCTCTC TERM 1195 738661 - 738649 - g 70 -5.5 -4.57516 | overlap 738650 AGATTTAAACGAAAA CGCAC CAC GTGCA ATGGCAGTAATCAAC glnS 737615 - 739285 + | glutaminyl-tRNA synthetase TERM 1196 739298 - 739315 + G 87 -6.2 -5.09173 | opp_overlap 739298 TAATTTTGATAATAA GCGGTC AAAAAC GGCCGC TTTTTTACACTATTC APJL_0675 739288 - 739482 + | hypothetical protein TERM 1197 739516 - 739490 - T 74 -8.1 -3.75229 | opp_overlap 739496, overlap 739496 TAAACTAGATTTAAA CAAAAACGGTC ATTAA GACCGTTTTTT ATGCTTGTTTACTAT TERM 1198 739496 - 739510 + T 95 -7.1 -5.4111 | opp_overlap 739490 739496 AGATTTAAACAAAAA CGGTC ATTAA GACCG TTTTTTATGCTTGTT TERM 1199 739510 - 739496 - T 95 -7.1 -5.31519 | opp_overlap 739496, overlap 739490 AGATTTAAACAAAAA CGGTC ATTAA GACCG TTTTTTATGCTTGTT APJL_0676 740906 - 739515 - | putative transport protein TERM 1200 740080 - 740070 - G 71 -2.4 -5.10208 | TAACGGTAATAAAAA CGGG ATA CCGG AACCGCTTAACCGAA TERM 1201 740233 - 740212 - G 78 -5.1 -4.97957 | gap 1 CAGATAAGAATAAAA CCG-ACCGTT AAA ATCGGTACGG CTCTCATAACATTAT TERM 1202 740479 - 740459 - G 71 -6.7 -4.08945 | overlap 740448 740460 ACCAGCCGCCTAAAA TCGGCCCGA GGA TCGGTCCGG TTAAACCTGCCATCG TERM 1203 740478 - 740460 - G 76 -10.2 -3.05046 | overlap 740448 740459 CCAGCCGCCTAAAAT CGGCCCGA GGA TCGGTCCG GTTAAACCTGCCATC TERM 1204 740679 - 740669 - G 86 -6.8 -5.06472 | overlap 740670 740671 ATACAAATAACAAAA TCGC ACT GCGA AATACTCGCAATGTA TERM 1205 741077 - 741056 - R 91 -6.6 -5.42259 | opp_overlap 741056 CTATCGCTAAAAAAA GCAAGTAG GTTAAT CCACTTGC TTTTCAAACTTAGTA APJL_0677 743195 - 741087 - | putative soluble lytic murein transglycosylase hpt 743843 - 743304 - | hypoxanthine phosphoribosyl transferase TERM 1206 743945 - 743909 - R 91 -9.8 -4.71222 | gap 1, opp_overlap 743908 743905 743914, overlap 743913 743914 ATACTAAAATCAAAA TAAATTTGGCATAACAC CAAA ATGTTATGCC-AATTTA CTTATTTTAGTTGTC TERM 1207 743942 - 743913 - R 100 -8.7 -4.86613 | opp_overlap 743908 743905 743914, overlap 743909 743914 TAAAATCAAAATAAA TTTGGCATAACAC CAAA ATGTTATGCCAAT TTACTTATTTTAGTT TERM 1208 743941 - 743914 - R 90 -12.2 -3.49527 | opp_overlap 743908 743905 743914, overlap 743913 743909 AAAATCAAAATAAAT TTGGCATAACAC CAAA ATGTTATGCCAA TTTACTTATTTTAGT TERM 1209 743914 - 743941 + r 91 -11.5 -4.21737 | opp_overlap 743914 743913 743909, overlap 743908 743905 AAAATCAAAATAAAT TTGGCATAACA CCAAAA TGTTATGCCAA TTTACTTATTTTAGT metB 745083 - 743947 - | cystathionine gamma-synthase dapB 746006 - 745197 - | dihydrodipicolinate reductase APJL_0681 746640 - 746065 - | hypothetical protein TERM 1210 746150 - 746133 - G 70 -2.7 -5.01845 | overlap 746142 746143 TAGAACAACGAAAAA TAGCCAT AACT ACAGCTA TCATAGATGTAATAG APJL_0682 747557 - 746640 - | hypothetical protein mtfA 748667 - 747582 - | putative RNA 2'-O-ribose methyltransferase TERM 1211 748808 - 748860 + r 82 -7.9 -4.43879 | gap 1, opp_overlap 748826, overlap 748826 TGAAAACAATAGGTG GCAGGGAGAATGCAAAAATCCCTG CGGCAA CAGGGATT-TTGTGTTTGACCTGC TTTTGATTAACTCAT TERM 1212 748843 - 748826 - R 88 -7.7 -4.78149 | opp_overlap 748808 748826 GGGAGAATGCAAAAA TCCCTGC GGCA ACAGGGA TTTTGTGTTTGACCT TERM 1213 748826 - 748843 + r 83 -7 -4.79451 | opp_overlap 748826, overlap 748808 GGGAGAATGCAAAAA TCCCTG CGGCAA CAGGGA TTTTGTGTTTGACCT TERM 1214 749022 - 749046 + r 100 -10 -5.41143 | opp_overlap 749006 CAAAAACAATGTTTT CCGCCTATTC TAACT GATTAGGCGG TTTTTTTAGCACGTA APJL_0684 749443 - 749039 - | membrane protein TERM 1215 749120 - 749102 - G 100 -8.8 -5.31877 | opp_overlap 749106 ACCGATCATAAAAAA TACGCCGC CAA GCGGTGTA CTCCACACAAATAAT TERM 1216 749419 - 749405 - G 73 -2.7 -5.10968 | AGCAATACAGAAAAA GCCGC TAATT GCTGC AAATAAGATAAATTT TERM 1217 749481 - 749462 - H 78 -3.6 -5.40072 | overlap 749465 TTCTCCTTAAAAAAA TAATGCTA AATA TAGCATAA AATTTATTACACATT TERM 1218 749478 - 749465 - H 75 -5.3 -4.79949 | overlap 749462 TCCTTAAAAAAATAA TGCTA AATA TAGCA TAAAATTTATTACAC TERM 1219 750544 - 750522 - g 80 -4.8 -5.14563 | opp_overlap 750522 TGGGTCATTAAAAAA TTCGGTACGC ACT GGTTACCGAA ATTATTCGCCTTAAA dld 749547 - 751238 + | D-lactate dehydrogenase TERM 1220 751321 - 751357 + T 70 -6.8 -4.13271 | opp_overlap 751326, overlap 751326 AGTTAATATAAATAT AAAAACGCACTAAA TCCCTTCAC TTTAGTGCGTTTTG TTTACTTATTCTATA TERM 1221 751352 - 751326 - T 91 -6.7 -5.26155 | opp_overlap 751321 751326 ATATAAATATAAAAA CGCACTAAA TCCCTTCAC TTTAGTGCG TTTTGTTTACTTATT TERM 1222 751326 - 751352 + T 82 -6.7 -5.03713 | opp_overlap 751326, overlap 751321 ATATAAATATAAAAA CGCACTAAA TCCCTTCAC TTTAGTGCG TTTTGTTTACTTATT torZ 753850 - 751376 - | trimethylamine-N-oxide reductase 2 TERM 1223 751417 - 751431 + g 81 -11.4 -2.74645 | overlap 751415 751414 TAAATACGGTTACTT CCGGTG CAA CACCGG TAAATTTCTCTACTT TERM 1224 751524 - 751540 + g 72 -7.3 -3.93216 | AACACATTTGGATTA CCGTTTT TAC AAAGCGG TTGTTCTGATTTACC TERM 1225 752138 - 752152 + g 73 -7.2 -4.16033 | overlap 752134 CCAATCCATTTCCGA TTTACC TTC GGTAAA TTCTTGTTCTTTACC TERM 1226 753424 - 753442 + g 83 -8.8 -4.17878 | opp_overlap 753413 AAATTGCACTTGGGC CATGTGCG TCA CGCACACG TTTCATTTCGTTTGC torY 755164 - 754046 - | cytochrome c-type protein TorY TERM 1227 755847 - 755834 - g 75 -3.1 -5.16237 | AACGGCATTAAAAAA GTAGC TTTG ACTAC TAACGGTTATCGTAT moaA 755516 - 756538 + | molybdenum cofactor biosynthesis protein A TERM 1228 757151 - 757139 - g 73 -9.1 -3.51708 | CACTGTGCAAATTAA CCGGT AAA ACCGG TGTGGAAATGGAAGC moaC 756823 - 757299 + | molybdenum cofactor biosynthesis protein C moaD 757321 - 757566 + | molybdopterin converting factor, small subunit moaE 757567 - 758022 + | molybdopterin converting factor subunit 2 TERM 1229 758041 - 758081 + F 93 -6.4 -5.47431 | ACGCCCTTAGATTCA CGGAATG-TGTCAGAAAGTT TAT AATATTC-GACAACATTCCG TTTTTTATATATTGA TERM 1230 758149 - 758131 - g 83 -9.6 -3.92869 | TTATTGATTTACAAA TCGCTGCT GAG AACAGCGA AAATCTCCCGTCTTT APJL_0692 758103 - 758594 + | putative metalloprotease TERM 1231 758622 - 758642 + G 89 -10.4 -3.99374 | opp_overlap 758622 TGATTTTAGCTGAAA TGCCTCCG CTTGA CGGGGGCA TTGTTATTCATAGCG TERM 1232 758642 - 758622 - g 75 -8.9 -3.60627 | opp_overlap 758622 TGATTTTAGCTGAAA TGCCTCCGC TTG ACGGGGGCA TTGTTATTCATAGCG APJL_0693 758606 - 760396 + | acetyltransferase TERM 1233 760416 - 760446 + T 85 -12.7 -2.7464 | opp_overlap 760422, overlap 760422 TTGCAAATCGCTATA AAAAAACCACCGC TTATT GCGGTGGTTTTTC ATTTACGAATACATT TERM 1234 760440 - 760422 - T 100 -11.7 -5.61596 | opp_overlap 760416 760422 ATCGCTATAAAAAAA CCACCGC TTATT GCGGTGG TTTTTCATTTACGAA TERM 1235 760422 - 760440 + T 100 -11.7 -4.98531 | opp_overlap 760422, overlap 760416 ATCGCTATAAAAAAA CCACCGC TTATT GCGGTGG TTTTTCATTTACGAA topA 763069 - 760460 - | DNA topoisomerase I TERM 1236 760677 - 760693 + g 76 -7.9 -4.12198 | overlap 760678 TCGGCAACTTTTGGC GCGCGTG TTT CACGCGA TTTTGGGAAATTATG TERM 1237 760678 - 760692 + g 83 -11.4 -3.06837 | overlap 760677 CGGCAACTTTTGGCG CGCGTG TTT CACGCG ATTTTGGGAAATTAT TERM 1238 760805 - 760823 + g 79 -6.6 -4.62302 | CGTCGGCTCTTCGCG CGGCGGAG CCA CTTCACCG TTTTTCAGAATCTTA TERM 1239 761881 - 761893 + g 100 -9.1 -4.69027 | opp_overlap 761881 AAATAAGATCATACA GACGC TCT GCGTC TTTTTCCATACCTTT TERM 1240 762202 - 762227 + g 80 -6.1 -4.90455 | opp_overlap 762202 762196 TTGAAGTAATAAACG GCGGACTTGCT TTTG AGGAAGTCGGC TTTTTATCAATCTCT TERM 1241 762279 - 762247 - G 84 -10.7 -3.58037 | opp_overlap 762247 762255, overlap 762254 TATCAATCTCTGAAA CGATAAATTCGCTAC CTT GTAACGATTTTACCG CTTCATCCGCTTGTT APJL_0695 763211 - 764107 + | putative HTH-type transcriptional regulator TERM 1242 764169 - 764146 - T 100 -8.9 -5.18371 | TCTTACAAAATAAAA CGTCTCTCC TTTTAC GGAAAGACG TTCGCAGATATTTAG argA 765512 - 764199 - | N-acetylglutamate synthase TERM 1243 765609 - 765646 + r 100 -15.1 -3.86481 | opp_overlap 765609, overlap 765598 TCTATCCATAAAAAA GCGGTTGGATTTGCAAA TTTT TTTACAAATTCAACCGC TTATTATCGCTTGTT TERM 1244 765646 - 765609 - R 100 -15.1 -5.28176 | opp_overlap 765598 765609 TCTATCCATAAAAAA GCGGTTGGATTTGCAAA TTTT TTTACAAATTCAACCGC TTATTATCGCTTGTT aroA 766958 - 765660 - | 3-phosphoshikimate 1-carboxyvinyltransferase hisC1 768066 - 766972 - | histidinol-phosphate aminotransferase TERM 1245 768247 - 768210 - R 95 -12.9 -3.85698 | opp_overlap 768213, overlap 768213 TCTTCCCTTCATAAA CAAGCGGTCGTAAGTCT AGGA AAATTTACGACCGCTTA TACATTCATATTAAG TERM 1246 768244 - 768213 - R 93 -12.4 -4.06419 | opp_overlap 768213, overlap 768210 TCCCTTCATAAACAA GCGGTCGTAAGTCT AGGA AAATTTACGACCGC TTATACATTCATATT TERM 1247 768213 - 768244 + r 89 -12.4 -3.44792 | opp_overlap 768213 768210 TCCCTTCATAAACAA GCGGTCGTAAGTCT AGGA AAATTTACGACCGC TTATACATTCATATT metC2 769534 - 768266 - | putative cystathionine beta-lyase TERM 1248 769715 - 769697 - R 100 -11 -5.42259 | opp_overlap 769697 CGATCTGTAAAAAAA CCACCTGC ACG GCAGATGG TTTCTTTTTATATAC TERM 1249 769697 - 769715 + r 100 -8.8 -5.01422 | opp_overlap 769697 CGATCTGTAAAAAAA CCACCTGC ACG GCAGATGG TTTCTTTTTATATAC serC 770828 - 769740 - | phosphoserine aminotransferase TERM 1250 770874 - 770891 + r 79 -8.5 -4.13304 | opp_overlap 770863 CTGATTTAGCCATTC TAGCGAA AATA TTCGCTA TTTTAAAAGTACTTT TERM 1251 771659 - 771645 - R 100 -8.6 -4.93365 | TCGCATAATCAAAAA CCAATG TCG CATTGG GCGTATGGGCATTTA TERM 1252 773761 - 773781 + r 72 -7.5 -3.75229 | opp_overlap 773760 773761 773757, overlap 773762 TTGAGTGCAAATAAT GCCGCATCA ATC TGGTGCGGA TTTAAATCTACTTTG TERM 1253 773762 - 773780 + r 79 -11 -2.84414 | opp_overlap 773760 773761 773757, overlap 773761 TGAGTGCAAATAATG CCGCATCA ATC TGGTGCGG ATTTAAATCTACTTT APJL_0703 777208 - 773891 - | potential type III restriction enzyme TERM 1254 775062 - 775077 + g 76 -2.6 -5.3671 | gap 1 AGCTGTACCATTTCT TGGCGTT TAA AAC-CCA TTTTTTGGTTATCTT TERM 1255 775594 - 775604 + g 71 -2.4 -5.12617 | opp_overlap 775594 CTCCCACATTAATCA GTGC AAA GCTC TTTTTTAGATCATTA TERM 1256 776230 - 776249 + g 70 -3.5 -4.88405 | GGATTTTTTGTACAT CGGCTTT TTTAGT AATGCCG TTTTCTTTACCGATT TERM 1257 776461 - 776450 - G 70 -3.6 -4.81249 | GTTTAAATCCAAAAA GCGA TCAA CCGC TACCGTCAGTTCGCC TERM 1258 776530 - 776545 + g 77 -4.6 -4.96501 | opp_overlap 776525 TATCATTAAACAAGC CCGTGC CTTG GAACGG TTTATTTTTATCAAA APJL_0704 780498 - 777610 - | methylation subunit, type III restriction-modification system TERM 1259 779734 - 779723 - G 71 -3 -4.96848 | opp_overlap 779703 779723, overlap 779724 TTTTTGATATAAAAA TCAA GCTC TTGA TTTAAAAACTTGCCG TERM 1260 780740 - 780701 - R 89 -11.1 -3.87075 | opp_overlap 780707, overlap 780707 AGCACCGCTTATAAA TAAAAATCCTTGTAATT GATAAA AATTACAAGGATTTTAA TAGAATTTAGTTAAG TERM 1261 780707 - 780734 + r 86 -10.1 -4.29432 | opp_overlap 780707 780701 GCTTATAAATAAAAA TCCTTGTAATT GATAAA AATTACAAGGA TTTTAATAGAATTTA TERM 1262 780734 - 780707 - R 100 -10.1 -5.38054 | opp_overlap 780707, overlap 780701 GCTTATAAATAAAAA TCCTTGTAATT GATAAA AATTACAAGGA TTTTAATAGAATTTA APJL_0705 781695 - 780823 - | putative HTH-type transcriptional regulator TERM 1263 781062 - 781082 + g 76 -7.6 -4.08216 | overlap 781075 781077 TAATCGCAATGGTTT TCGCATGA TTTTT TCGTGCGA TTTTCAACGCACTGA TERM 1264 781606 - 781627 + g 73 -5.9 -4.44277 | opp_overlap 781594 781611, overlap 781611 AATTTCAGGCTGAGC CAAAATCGC CGAT GCGATTTTC TTTTCCGTTTTGGTC TERM 1265 781611 - 781622 + g 85 -5.8 -5.14698 | opp_overlap 781611, overlap 781606 CAGGCTGAGCCAAAA TCGC CGAT GCGA TTTTCTTTTCCGTTT APJL_0706 782172 - 781705 - | hypothetical protein TERM 1266 782341 - 782362 + r 87 -11.7 -3.53811 | opp_overlap 782329 AATTTTATACCACGC GAGGCATAA ATAT TTATGCCTC TTTGACAGGACTAAC ppx 783881 - 782373 - | exopolyphosphatase APJL_0708 784090 - 784425 + | hypothetical protein TERM 1267 786289 - 786337 + T 100 -16.3 -3.64703 | opp_overlap 786291 786330, overlap 786290 786294 TAAACTCCAAATATA AACAAGCGGTTGATTTTTGTAAA AAT TTAACAAAAATCAACCGCTTGCA TTTCGATAGAAGCGC TERM 1268 786290 - 786336 + T 100 -19.8 -2.78679 | opp_overlap 786291 786330, overlap 786289 786294 AAACTCCAAATATAA ACAAGCGGTTGATTTTTGTAAA AAT TTAACAAAAATCAACCGCTTGC ATTTCGATAGAAGCG TERM 1269 786335 - 786291 - T 100 -23.3 -4.3453 | opp_overlap 786290 786289 786294, overlap 786330 AACTCCAAATATAAA CAAGCGGTTGATTTTTGTAAA AAT TTAACAAAAATCAACCGCTTG CATTTCGATAGAAGC TERM 1270 786294 - 786332 + T 100 -19.2 -3.29324 | opp_overlap 786291 786330, overlap 786290 786289 TCCAAATATAAACAA GCGGTTGATTTTTGTAAA AAT TTAACAAAAATCAACCGC TTGCATTTCGATAGA APJL_0711 786845 - 786396 - | transcriptional regulator NrdR APJL_0712 787132 - 786845 - | hypothetical protein dnaB2 788585 - 787104 - | replicative DNA helicase TERM 1271 788247 - 788260 + gH 76 -9.5 -3.42256 | opp_overlap 788246 788245, overlap 788245 ATAAGCAAGAATATT CGCCG CACT CGGCG TGTTCTTAGATAACT TERM 1272 788894 - 788880 - g 71 -10 -2.64144 | opp_overlap 788878 788880, overlap 788879 CGTTTACTCAAACAC CGGCTA AGT TAGCCG TCTTTGATGCGGTTG TERM 1273 788880 - 788894 + G 78 -10 -3.46534 | opp_overlap 788880 788879, overlap 788878 CGTTTACTCAAACAC CGGCTA AGT TAGCCG TCTTTGATGCGGTTG APJL_0714 788765 - 789673 + | ABC-type enterochelin transport system,periplasmic component TERM 1274 789729 - 789704 - f 89 -10.6 -4.17296 | opp_overlap 789701 789704 CGTTAGATAGATAAA TGGCACATAT CTCAAT ATATGTGCCA TCGTTGATTATTAAT TERM 1275 789704 - 789729 + F 77 -10.6 -2.90373 | opp_overlap 789704, overlap 789701 CGTTAGATAGATAAA TGGCACATAT CTCAAT ATATGTGCCA TCGTTGATTATTAAT APJL_0715 789760 - 790707 + | iron(III) transport system permease protein APJL_0716 790707 - 791648 + | iron(III) transport system permease protein APJL_0717 791650 - 792408 + | iron(III) transport system ATP-binding protein APJL_0718 792597 - 793277 + | phosphate transport regulator TERM 1276 793432 - 793449 + G 71 -4.1 -4.81249 | TTACCGCCCGCCAGG CTATCGT AATT GCGATGG TTTTTGAATTTGCCG APJL_0719 793287 - 794549 + | putative phosphate permease TERM 1277 794562 - 794590 + F 85 -9.8 -3.83026 | gap 1, opp_overlap 794569 TAATTTTATCGTTCG GGGAAAG-TATGT TTAA ACATATCTTTCCC TTTCATCTAAAAGGA APJL_0720 794613 - 795218 + | SH3 domain-containing protein TERM 1278 795230 - 795274 + T 95 -11 -4.60487 | opp_overlap 795234, overlap 795231 795234 ATAGTCTTCTATCAA TTAAGCGGTTATTTTTGCAA AAAGC TTGTAAAAACAACCGCTTAC TTTTTGCGAATACTC TERM 1279 795231 - 795273 + T 100 -14.5 -3.3581 | opp_overlap 795234, overlap 795230 795234 TAGTCTTCTATCAAT TAAGCGGTTATTTTTGCAA AAAGC TTGTAAAAACAACCGCTTA CTTTTTGCGAATACT TERM 1280 795270 - 795234 - T 93 -12.5 -3.39895 | opp_overlap 795234 795231 795230 TCTTCTATCAATTAA GCGGTTATTTTTGCAAA AAG CTTGTAAAAACAACCGC TTACTTTTTGCGAAT TERM 1281 795234 - 795270 + T 91 -11.8 -3.81256 | opp_overlap 795234, overlap 795231 795230 TCTTCTATCAATTAA GCGGTTATTTTTGCAA AAAGC TTGTAAAAACAACCGC TTACTTTTTGCGAAT APJL_0721 795498 - 795271 - | hypothetical protein APJL_0722 796020 - 795505 - | hypothetical protein TERM 1282 796077 - 796056 - R 100 -10.9 -4.83169 | overlap 796026 796042 ACCCTTTGATAAAAA GGCACAAGC CTAA ACTTGTGCC ATAAAAAATTTGGAA tgt 797241 - 796093 - | queuine tRNA-ribosyltransferase TERM 1283 797133 - 797153 + g 73 -9 -3.54307 | gap 1 CCGTACCGTAGGTAC CGACCGGCA TAAA TGCCGG-CG TTTCAACCACATATT TERM 1284 797195 - 797222 + g 78 -5.5 -4.92777 | gap 1, opp_overlap 797195 CGAGAAAACGTTAAA CGACC-GCGACG CGCAT TGCCGCTGGTCG TTTTTAATTCATATT APJL_0724 797489 - 797313 - | hypothetical protein APJL_0725 797564 - 798136 + | hypothetical protein cspD 798244 - 798450 + | cold shock-like protein CspD TERM 1285 798506 - 798470 - f 100 -19.7 -3.37071 | opp_overlap 798470, overlap 798459 AAACCCGATTTACAA GCGGTCGAATTTGTATA ATT TTTACAAATTCGACCGC TTTTTTATTCTATGC TERM 1286 798470 - 798506 + F 100 -19.7 -5.60689 | opp_overlap 798459 798470 AAACCCGATTTACAA GCGGTCGAATTTGTATA ATT TTTACAAATTCGACCGC TTTTTTATTCTATGC TERM 1287 799318 - 799297 - f 81 -7.4 -4.67011 | opp_overlap 799292 799297 AACCGTATTTAAAAA TAGTGTGA TAAATC TCACACTA TTTCCTTTTCTCACT TERM 1288 799297 - 799318 + F 75 -7.4 -4.27483 | opp_overlap 799297, overlap 799292 AACCGTATTTAAAAA TAGTGTGA TAAATC TCACACTA TTTCCTTTTCTCACT TERM 1289 800205 - 800193 - g 71 -3.3 -4.99134 | overlap 800203 AGGGCAAATTAAAAA GGCAT TAA AAGCC CTATTAGTGGCAAAA TERM 1290 800649 - 800628 - g 82 -5.8 -5.03747 | opp_overlap 800632, overlap 800629 AAATCTTGCAAAAAA TCAAGCGG ATTTGA CCGCTTGG TGGCAACAGATTAAT TERM 1291 800648 - 800629 - g 78 -9.3 -3.61164 | opp_overlap 800632, overlap 800628 AATCTTGCAAAAAAT CAAGCGG ATTTGA CCGCTTG GTGGCAACAGATTAA ilvI 799600 - 801324 + | acetolactate synthase 3 catalytic subunit TERM 1292 801752 - 801741 - g 75 -5.8 -4.67697 | CGGTAAAACAAGAAA CGAC AATA GTCG AAATCGTACGATCCG ilvH 801317 - 801808 + | acetolactate synthase 3 regulatory subunit TERM 1293 801819 - 801837 + T 100 -11 -5.10933 | TATAACATTTTACAG GGCGAACG CAT TGTTCGCC TTTTGTTTTAACTGA TERM 1294 801916 - 801893 - T 100 -12.6 -5.40072 | opp_overlap 801893 TTTTTTGTAAAAAAA TAGCTAATCC TTTC GGATTAGCTA TTTGAACCTAACGAA TERM 1295 801893 - 801916 + T 95 -12.6 -3.57144 | opp_overlap 801893 TTTTTTGTAAAAAAA TAGCTAATCC TTTC GGATTAGCTA TTTGAACCTAACGAA pmbA 803427 - 802078 - | antibiotic maturation factor PmbA APJL_0732 803535 - 804065 + | hypothetical protein APJL_0733 804110 - 804481 + | hypothetical protein TERM 1296 804490 - 804528 + F 100 -13.3 -3.84394 | opp_overlap 804490 804500 ACGCTAATCTTATAA GCGGTCAAAATTTGCAA TTTTT TTGCAAAATTCGACCGC TTTCCATTATCTATG TERM 1297 804528 - 804490 - f 100 -15.5 -3.36671 | opp_overlap 804490, overlap 804500 ACGCTAATCTTATAA GCGGTCAAAATTTGCAA TTTTT TTGCAAAATTCGACCGC TTTCCATTATCTATG TERM 1298 804658 - 804635 - f 72 -8.2 -3.57144 | CGCTTGATGTGGAAA CCCATTTAGT ACTC ACTAAAGGGG CGGAAATGACTCGTT ubiX 804664 - 805113 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 1299 805553 - 805563 + G 73 -5.4 -4.60889 | GATTTTAGATTTCTT TACC GCC GGTA TTTTTGCCGCTACTT yqgA 805116 - 805829 + | putative inner membrane protein TERM 1300 805839 - 805861 + F 79 -8.4 -4.09243 | opp_overlap 805839 805841, overlap 805841 805860 GCTTAATAGATACAA CATCCCACTG TTA CGGTGGGATA TTTTAAAAGAATATA TERM 1301 805861 - 805839 - f 74 -8.4 -3.68962 | opp_overlap 805839 805841 805860, overlap 805841 GCTTAATAGATACAA CATCCCACTG TTA CGGTGGGATA TTTTAAAAGAATATA TERM 1302 805841 - 805859 + F 84 -11 -3.6422 | opp_overlap 805839 805841, overlap 805839 TTAATAGATACAACA TCCCACTG TTA CGGTGGGA TATTTTAAAAGAATA TERM 1303 805859 - 805841 - f 73 -8.8 -3.42083 | opp_overlap 805841 805839, overlap 805839 TTAATAGATACAACA TCCCACTG TTA CGGTGGGA TATTTTAAAAGAATA APJL_0736 805876 - 806325 + | hypothetical protein TERM 1304 806335 - 806311 - T 76 -4.4 -5.19879 | gap 1, opp_overlap 806303, overlap 806303 806305 806312 806313 TGGGAAAGAGAAAAA GTCTCGTTTTC CTAA GAAAACAAG-C GGTCAGATTTCACTC TERM 1305 806353 - 806363 + T 74 -2.6 -5.33866 | TCAGATTTCACTCAT TTTT TGT AAAA TTTTTTCTAAATTTC APJL_0737 806709 - 806398 - | translation initiation factor Sui1 TERM 1306 806769 - 806750 - R 100 -8.5 -5.50723 | opp_overlap 806750 CGATTAAAACAAAAA GGCGGGC AAAAAA GCCCACC TTATTTAATCCGTGA pyrF 807481 - 806789 - | orotidine 5'-phosphate decarboxylase TERM 1307 807154 - 807133 - G 83 -8.8 -4.10657 | opp_overlap 807124 CCATACTGGTTAAAA CCGTTACT GCAATA AGTAACGG CGCATCTTTACCATA APJL_0739 808702 - 807506 - | hypothetical protein APJL_0740 808992 - 808702 - | hypothetical protein ihfB 809342 - 809061 - | integration host factor, beta subunit TERM 1308 809399 - 809364 - R 84 -9.9 -3.68351 | opp_overlap 809369, overlap 809369 CTCTGATTATTTAAA TTAAAGCGGATATGT CTTTCC ACATACCCGCTTTTA ATTAGAAAGGCTCTA TERM 1309 809394 - 809369 - R 86 -9.8 -4.08887 | opp_overlap 809369, overlap 809364 ATTATTTAAATTAAA GCGGATATGT CTTTCC ACATACCCGC TTTTAATTAGAAAGG TERM 1310 809369 - 809394 + r 82 -7.6 -4.4078 | opp_overlap 809369 809364 ATTATTTAAATTAAA GCGGATATGT CTTTCC ACATACCCGC TTTTAATTAGAAAGG rpsA 811080 - 809416 - | 30S ribosomal protein S1 TERM 1311 811168 - 811148 - R 77 -10.5 -2.8474 | overlap 811145 GGTTAGTGATAATGA CCGAACACA TCC TATGTTCGG CGAATAAATTATAAT cmkA 811851 - 811177 - | cytidylate kinase 1 degS 812912 - 812097 - | protease DegS TERM 1312 813048 - 813027 - R 100 -9.5 -5.66684 | opp_overlap 813027 TAAGTTATAAAAAAA GCCCTAATC TTAC GATTAAGGC TTTATATATGGTGCT TERM 1313 813027 - 813048 + r 73 -7.3 -4.15632 | opp_overlap 813027 TAAGTTATAAAAAAA GCCCTAATC TTAC GATTAAGGC TTTATATATGGTGCT secG 813487 - 813161 - | preprotein translocase subunit SecG topB2 815535 - 813619 - | DNA topoisomerase III TERM 1314 814431 - 814449 + g 79 -3.1 -5.40464 | overlap 814434 AACGATTACGAATTT CCGGA TTAACCGCC TCCGG TTTTTCTTTATACTC TERM 1315 815230 - 815253 + g 82 -3 -5.4477 | overlap 815222 TTCTCGGTCCGGGTC GCCGGCGTTT ACCA ATACGTCCGC TTTTTTTACCAATTT TERM 1316 817060 - 817050 - g 79 -8.2 -4.1964 | opp_overlap 817043 CTTAACATTGCAAAA CCGG AAG CCGG CTTAGGCACTTACTA APJL_0747 815718 - 817163 + | alkaline phosphatase TERM 1317 817204 - 817182 - T 100 -12.1 -5.18355 | opp_overlap 817182 TTCAAAAACTAAAAA CGCACCTTA GTATT TAAGGTGCG TTTTTTGTTAGTTCA TERM 1318 817182 - 817204 + T 100 -12.8 -5.5604 | opp_overlap 817182 TTCAAAAACTAAAAA CGCACCTTAG TAT TTAAGGTGCG TTTTTTGTTAGTTCA mepA 818042 - 817212 - | penicillin-insensitive murein endopeptidase TERM 1319 817741 - 817726 - G 71 -2.4 -5.08601 | overlap 817727 TGACCTGAAGAAAAA CGCCCG CCCG CCGGCA TCCCCATATCACCGA TERM 1320 817766 - 817781 + g 71 -6.8 -4.13748 | overlap 817769 CACCGATTAAGATTG GCGGTA AGCC TGCCGC TTTCGTATTTTTGGC TERM 1321 818119 - 818076 - R 100 -18.5 -5.87996 | opp_overlap 818079 CAATGAATAAAAAAA CAAGCGGTCTTTTTTGC AGCATTTTTA GCAAAAAAGACCGCTTG TTCGGATTATACCCG TERM 1322 818079 - 818116 + r 100 -14.4 -3.6968 | opp_overlap 818076 TGAATAAAAAAACAA GCGGTCTTTTTTGC AGCATTTTTA GCAAAAAAGACCGC TTGTTCGGATTATAC aroC 819219 - 818137 - | chorismate synthase kefA1 822549 - 819241 - | potassium efflux protein KefA TERM 1323 820960 - 820928 - G 73 -9.1 -3.5594 | AACGTACTTGGTAAA GCCAGTAGCAATGTC CAA AACATAGCTTCCGGC GTGTACCAATGGCTG TERM 1324 821017 - 821031 + g 70 -3.5 -4.88293 | GGCAATTTTAAACAA GCGGT CTTTT ATCGC TTTCTTTTTCCAATT TERM 1325 821091 - 821075 - G 82 -2.2 -5.66229 | overlap 821076 821086 821089 ATCAATAAGAAAAAA GCGGTA AATAA TACCGT AGGTAACAGATTCTT TERM 1326 822047 - 822064 + g 70 -5.6 -4.29396 | TTTAAGCGGGTAATT TCTTGC GTTCTG GCAAGA TTTTCATCGGTAATT TERM 1327 822205 - 822223 + g 73 -3.8 -5.02074 | overlap 822207 TAATTCATCAAGCGA GAGCGTAT CAA ATGCGCTA TTTTTTAACGAATCC kefA2 825911 - 822567 - | potassium efflux protein KefA TERM 1328 823406 - 823390 - G 88 -9.5 -4.31837 | AATAAATTCAATAAA GTAATGG ATT CCATTAC CACGCCTTGTGCGGT TERM 1329 824330 - 824318 - G 77 -4.7 -5.02074 | opp_overlap 824318 824319, overlap 824319 TCACCGTCCAAAAAA TCGCC GCC GGCGT ATTCCATTGACTGTC TERM 1330 824329 - 824319 - G 73 -8.2 -3.60762 | opp_overlap 824318 824319, overlap 824318 CACCGTCCAAAAAAT CGCC GCC GGCG TATTCCATTGACTGT menE 827322 - 825892 - | O-succinylbenzoic acid--CoA ligase TERM 1331 826327 - 826342 + g 85 -4 -5.44119 | gap 1, opp_overlap 826327 TTCTTGGTTCACAAG CGGTCGA ATT TC-ACCG TTTTTTTGCAATGCG seqA 827900 - 827340 - | replication initiation regulator SeqA APJL_0754 828024 - 828809 + | putative esterase/lipase APJL_0755 828817 - 829542 + | SAM-dependent methyltransferase TERM 1332 829669 - 829687 + F 100 -9.6 -4.83243 | GATAAAATCTCGTAG GGGCGTAT CGA ATACGTCC TTTATTTTATATGAA TERM 1333 829974 - 829964 - g 74 -6.8 -4.32201 | CGAATCAATCCAAAA CTGC TTT GCAG AATTAAGCAAAAAAT fabI 829746 - 830534 + | enoyl-[acyl-carrier-protein] reductase TERM 1334 830563 - 830582 + F 100 -10.7 -5.72622 | opp_overlap 830563 TATAAGTATGTAAAA CGGACGC AATTTA GCGTCCG TTTTTTATTTCTGCG TERM 1335 830582 - 830563 - f 90 -10.7 -4.24963 | opp_overlap 830563 TATAAGTATGTAAAA CGGACGC AATTTA GCGTCCG TTTTTTATTTCTGCG APJL_0757 830729 - 831007 + | hypothetical protein APJL_0758 830982 - 831260 + | hypothetical protein TERM 1336 831269 - 831318 + F 100 -14.7 -3.82083 | gap 1, opp_overlap 831269 ATTATAAAATGATAA GCGGTTGGATTTAGTTGATTTTTT ACA AAAAATTCAGC-AAATCTAACCGC TTTCCGTTATAATCC TERM 1337 831318 - 831269 - f 86 -10.3 -3.73008 | gap 1, opp_overlap 831269 ATTATAAAATGATAA GCGGTTGGATTTAGTTGATTTTTT ACA AAAAATTCAGC-AAATCTAACCGC TTTCCGTTATAATCC TERM 1338 831348 - 831366 + F 100 -6 -5.98675 | CCTATCAAATTTCAT GGTGCA ACGATAC TGCACC TTTTTTATTTTTATA TERM 1339 831694 - 831671 - g 76 -7.6 -4.15044 | GTGCGTTTTAACAAA GACAATAAAT TACA ACTTATTGTC GATCATCCAAGCATT TERM 1340 832635 - 832659 + G 70 -5.7 -4.25104 | opp_overlap 832635 CGGACAATGCTAAAA CCGGCGT ATTTAATACCC ACGCCGG TTTTGATCCGAAAAA TERM 1341 833249 - 833231 - g 75 -2.4 -5.31275 | overlap 833234 833243 CTTCACGATAAAAAA GAAGAAAT GGA ATTCCGTC CGGAAGAAATCGCAC rnb 831392 - 833368 + | exoribonuclease II TERM 1342 833376 - 833425 + F 73 -8.9 -3.32963 | gap 1, opp_overlap 833395, overlap 833395 TTATCTAATCGGCAA GCGGTCAAATTTCGA-GAATTTTT TGC AAAATTTCCTACAAATTTGACCGC TTATCACATGAGGCT lrgA1 833443 - 833814 + | putative effector of murein hydrolase LrgA lrgB 833811 - 834497 + | putative effector of murein hydrolase apaH 834522 - 835334 + | diadenosine tetraphosphatase TERM 1343 835486 - 835507 + T 100 -13.1 -5.60993 | opp_overlap 835481 ACCATCAAATTCCAA TCCCTTGTC GAAA GACAAGGGA TTTTTTTATGCCAAA TERM 1344 835587 - 835548 - T 100 -16 -5.4756 | opp_overlap 835548 AATGCTAATAAAAAA GCCCATTTAAAATTGCTC GTCT GAACATTTTTAAATGGGC TTTCGCTTCTCTCAT TERM 1345 835548 - 835587 + T 100 -13.8 -3.83724 | opp_overlap 835548 AATGCTAATAAAAAA GCCCATTTAAAATTGCTC GTCT GAACATTTTTAAATGGGC TTTCGCTTCTCTCAT APJL_0763 835765 - 835523 - | hypothetical protein APJL_0764 835933 - 836688 + | SAM-dependent methyltransferase TERM 1346 836717 - 836697 - f 100 -6.9 -5.43514 | opp_overlap 836697 AAAATAAGTAAAAAA TCCTTCTTT GGC ATAGAAGGA TTTTTCAGCAATATA TERM 1347 836697 - 836717 + F 81 -6.9 -4.59109 | opp_overlap 836697 AAAATAAGTAAAAAA TCCTTCTTT GGC ATAGAAGGA TTTTTCAGCAATATA perM 836747 - 837808 + | putative permease APJL_0766 837838 - 838767 + | hypothetical protein TERM 1348 838768 - 838794 + F 90 -8.6 -4.60255 | opp_overlap 838768 838772, overlap 838772 GCATTGTTACATTAA CCTACTGCCCCG TTT TGGGGCAGTTGA TTTTTAGAGGATTAT TERM 1349 838794 - 838768 - f 77 -10.1 -3.26471 | opp_overlap 838768 838772, overlap 838772 GCATTGTTACATTAA CCTACTGCCCC GTTTT GGGGCAGTTGA TTTTTAGAGGATTAT TERM 1350 838772 - 838790 + F 93 -12.4 -3.80855 | opp_overlap 838768 838772, overlap 838768 TGTTACATTAACCTA CTGCCCCG TTT TGGGGCAG TTGATTTTTAGAGGA TERM 1351 838790 - 838772 - f 81 -11.7 -2.58714 | opp_overlap 838772 838768, overlap 838768 TGTTACATTAACCTA CTGCCCC GTTTT GGGGCAG TTGATTTTTAGAGGA TERM 1352 839203 - 839178 - g 73 -9.1 -3.55622 | gap 1, opp_overlap 839178 839177 839174 GGTAACGGTTTTAAA GCGATCATGACA GCT CGTCATGA-CGC CTTGTTTGAATTACA queA 838815 - 839900 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 1353 839909 - 839929 + T 100 -14.1 -5.53079 | CCCATAATCTCAATT GCCACGTTT TAC AAACGTGGC TTTTTTATCTATTTT rec2 842228 - 839934 - | recombination protein 2 TERM 1354 840503 - 840487 - G 74 -7.9 -3.91798 | opp_overlap 840483 TAAGCGTTAAGTAAA TCCGCCG CTC CGCCGGA ATGATCATTATCGTC APJL_0769 843542 - 842328 - | serine/threonine transporter SstT TERM 1355 843593 - 843570 - H 100 -14 -5.27779 | TGTAAGACTAAAAAA GGATATACGG CAAA CCGTATATCC GCCAAAATATGAAGT dgkA 843791 - 844153 + | diacylglycerol kinase TERM 1356 844161 - 844203 + F 100 -10.1 -4.99035 | opp_overlap 844161 844163 TTTTTTAAGGAGATA TAGGTGATAGATAATCAGT GTAAA ACGGATTATTTACCACCTA TTTTTATATCAATCA TERM 1357 844203 - 844161 - f 76 -10.1 -3.00298 | opp_overlap 844161, overlap 844163 TTTTTTAAGGAGATA TAGGTGATAGATAATCAGT GTAAA ACGGATTATTTACCACCTA TTTTTATATCAATCA TERM 1358 844976 - 844991 + G 71 -6.8 -4.11216 | TTATCGGCGGGCATA CGCACG ATAC CGTGTG TTTTGACGATAAAGG TERM 1359 845824 - 845809 - g 71 -3.4 -5.04385 | GATATGTTGAAAAAA TATTTT GAAG AAAATA AAGTCATCGACGCAA APJL_0771 844234 - 845877 + | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 1360 845914 - 845896 - f 100 -11.8 -5.55698 | opp_overlap 845896 CACAAGTCAAAAAAA GCTAAGCA ATA TGCTTAGC TTTTTTATTAGCTCA TERM 1361 845896 - 845914 + F 100 -11.8 -5.4833 | opp_overlap 845896 CACAAGTCAAAAAAA GCTAAGCA ATA TGCTTAGC TTTTTTATTAGCTCA APJL_0772 845956 - 846255 + | hypothetical protein APJL_0773 846384 - 846749 + | hypothetical protein TERM 1362 846763 - 846782 + T 79 -5 -5.24796 | AGCTGTTTTTCCGAA TCCCAC GTTTACTA GTGGGA TTTTTATTATATACA TERM 1363 847156 - 847172 + T 78 -10.9 -2.62616 | opp_overlap 847135 TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 1364 847431 - 847393 - T 100 -11.9 -5.28983 | opp_overlap 847393 TCTAAAATAGAAAAA GCGGTCGAAATTTGCTA TTTTT TTACAAATTTCAACCGC TTGCATAAATAAGTT lpdA 848882 - 847458 - | dihydrolipoamide dehydrogenase TERM 1365 848175 - 848192 + g 81 -4.2 -5.33866 | CGCAGTTACTTTAGT TTCAAG CATTAA CTTGAA TTTTTTCTCGATTTG TERM 1366 848973 - 848930 - R 86 -12.7 -2.78384 | opp_overlap 848933, overlap 848933 848967 GCGCCCCCTACGATA CAAGCGGTCGATTTTACAA CATTTT TTGTAAATTCAACCGCTTA CCTATTACATAACTA TERM 1367 848933 - 848970 + r 77 -10 -3.19522 | opp_overlap 848930 848933 848967 CCCCCTACGATACAA GCGGTCGATTTTACAA CATTTT TTGTAAATTCAACCGC TTACCTATTACATAA TERM 1368 848970 - 848933 - R 90 -12.2 -3.54475 | opp_overlap 848933, overlap 848930 848967 CCCCCTACGATACAA GCGGTCGATTTTACAA CATTTT TTGTAAATTCAACCGC TTACCTATTACATAA aceF 850876 - 848978 - | dihydrolipoamide acetyltransferase TERM 1369 850899 - 850930 + r 88 -8 -4.79955 | opp_overlap 850901 850904, overlap 850901 850904 ATCCTTCATTTGATA AATTATTCTCCCCC ATAA GGGGGAGAATGCTA TTTTCTTATGCGTAT TERM 1370 850928 - 850901 - R 77 -8.4 -3.89346 | opp_overlap 850899 850901 850904, overlap 850904 CCTTCATTTGATAAA TTATTCTCCCCC ATAA GGGGGAGAATGC TATTTTCTTATGCGT TERM 1371 850901 - 850928 + r 89 -10.6 -4.01115 | opp_overlap 850901 850904, overlap 850899 850904 CCTTCATTTGATAAA TTATTCTCCCCC ATAA GGGGGAGAATGC TATTTTCTTATGCGT TERM 1372 850925 - 850904 - R 100 -14.5 -3.01918 | opp_overlap 850901 850899 850904, overlap 850901 TCATTTGATAAATTA TTCTCCCCC ATAA GGGGGAGAA TGCTATTTTCTTATG TERM 1373 850904 - 850925 + r 100 -14.5 -3.0404 | opp_overlap 850904 850901, overlap 850901 850899 TCATTTGATAAATTA TTCTCCCCC ATAA GGGGGAGAA TGCTATTTTCTTATG aceE 853590 - 850936 - | pyruvate dehydrogenase subunit E1 TERM 1374 853937 - 853920 - R 74 -4.9 -4.85599 | opp_overlap 853920 TTCATTTCACAAAAA CGATTAA ATAT TTAACCG CTTACTATTAACGCA pyrD 854952 - 853945 - | dihydroorotate dehydrogenase 2 TERM 1375 855019 - 854991 - R 100 -13.2 -4.0683 | opp_overlap 854987 854985 854995, overlap 854992 854995 AAAGAAACGGATAAA TTAAGGGCGGGT ATCAA ACCCGCCCTTAC TGGATATTATGCATC TERM 1376 855018 - 854992 - R 100 -16.7 -3.02471 | opp_overlap 854987 854985 854995, overlap 854991 854995 AAGAAACGGATAAAT TAAGGGCGGGT ATCAA ACCCGCCCTTA CTGGATATTATGCAT TERM 1377 855015 - 854995 - R 100 -14 -3.63662 | opp_overlap 854995 854987 854985, overlap 854992 854991 AAACGGATAAATTAA GGGCGGGT ATCAA ACCCGCCC TTACTGGATATTATG TERM 1378 854995 - 855015 + r 100 -14 -3.22894 | opp_overlap 854992 854991 854995, overlap 854987 854985 AAACGGATAAATTAA GGGCGGGT ATCAA ACCCGCCC TTACTGGATATTATG prsA 855976 - 855026 - | ribose-phosphate pyrophosphokinase TERM 1379 855249 - 855259 + g 79 -8.2 -4.19577 | opp_overlap 855242 855237 855244 TAAGCGAATACGCGA CGCG CAC CGCG TTCTTTTAACGCTTC ispE 856845 - 855988 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase lolB 857487 - 856855 - | outer membrane lipoprotein LolB TERM 1380 857589 - 857573 - R 100 -9.4 -5.27335 | GTCTTCAAAGAAAAA GGCACC TTATC GGTGCC TGCAATAAAATAGCC msbA 859364 - 857616 - | lipid transporter ATP-binding/permease protein TERM 1381 858846 - 858828 - G 79 -11 -3.16039 | overlap 858815 AACGATGCCGATTAA GACACCGA TAA TCGGTGCC ATCACAAATAAAACC APJL_0782 860155 - 859469 - | putative effector of murein hydrolase TERM 1382 859719 - 859746 + g 73 -8.4 -3.65351 | opp_overlap 859714 859712, overlap 859713 859720 GCAACTAATACGCCT ACGGCGGTAATT GCCG AACTACCGCCGA TTTGAGTGGCGATAG TERM 1383 859720 - 859745 + g 83 -11.9 -2.78996 | opp_overlap 859714 859712, overlap 859713 859719 CAACTAATACGCCTA CGGCGGTAATT GCCG AACTACCGCCG ATTTGAGTGGCGATA lrgA2 860524 - 860165 - | putative effector of murein hydrolase LrgA TERM 1384 860542 - 860585 + r 82 -7.6 -4.51847 | opp_overlap 860545, overlap 860536 AAGTATCCTCCGTAA TAAGCGGTTAAATTTACAAA AAAT TTTGCAAAATCAACCGCTTG TTTTCTCACTTATTT TERM 1385 860582 - 860545 - R 87 -11.5 -3.61715 | opp_overlap 860536 860542 TATCCTCCGTAATAA GCGGTTAAATTTACAAA AAAT TTTGCAAAATCAACCGC TTGTTTTCTCACTTA APJL_0784 862513 - 860591 - | ATP-dependent helicase TERM 1386 861127 - 861092 - G 71 -4 -4.85129 | overlap 861096 861099 AGTACAGAGCAAAAA GCAACGACCGTTATTG GCTT CAATAACGGGCATCAA CATTTTGCCTAGTTC TERM 1387 861123 - 861096 - G 81 -9.2 -3.86508 | overlap 861092 861099 CAGAGCAAAAAGCAA CGACCGTTATTG GCTT CAATAACGGGCA TCAACATTTTGCCTA TERM 1388 861120 - 861099 - G 83 -11.7 -2.98982 | overlap 861096 861092 AGCAAAAAGCAACGA CCGTTATTG GCTT CAATAACGG GCATCAACATTTTGC APJL_0785 862635 - 862847 + | hypothetical protein TERM 1389 862967 - 862912 - T 100 -17.2 -4.77036 | opp_overlap 862915 862925 862966, overlap 862915 GTCTATTATTAAAAA CTAGCGGTCTGATTTTCTAAGAAATT TGCA AATTTCCTGCAAAATCAGACCGCTTG TTAAACACCGTTTGG TERM 1390 862915 - 862964 + T 100 -17.5 -3.61894 | opp_overlap 862912 862915, overlap 862925 TATTATTAAAAACTA GCGGTCTGATTTTCTAAGAAATT TGCA AATTTCCTGCAAAATCAGACCGC TTGTTAAACACCGTT TERM 1391 862964 - 862915 - T 100 -17.5 -3.29543 | opp_overlap 862915 862925, overlap 862912 TATTATTAAAAACTA GCGGTCTGATTTTCTAAGAAATT TGCA AATTTCCTGCAAAATCAGACCGC TTGTTAAACACCGTT uvrA 865814 - 862986 - | excinuclease ABC subunit A TERM 1392 863735 - 863746 + g 70 -7.2 -3.78022 | TTGAACGTGGTGTAC GCCC AATC GGGC TTTGGTCGATATCAA TERM 1393 865409 - 865423 + g 70 -7.2 -3.85698 | CCATTACTCTATCCA CCATTT GCG AAATGG TTTGTGCCGCCAACG TERM 1394 865724 - 865702 - G 89 -10.6 -4.05026 | opp_overlap 865714 TCGAAAGCTAAAGAA GACTTACCCG ATC CGGATAAGCC GGTAATTACAATAAA TERM 1395 866248 - 866237 - g 73 -5.8 -4.43012 | opp_overlap 866237 ATGGCAAGACCAAAA CGGT CAAG ACCG TTATACCACCGAAAT ssb 865965 - 866489 + | single-strand DNA-binding protein TERM 1396 866525 - 866555 + T 81 -9.3 -3.75332 | gap 1, opp_overlap 866525 866532, overlap 866532 TCGAATATTTACAAA TAAAAAA-CGGAAG CTTA CTTCCGTTTTTTTA TTTAGGTTAAAGAAT TERM 1397 866554 - 866525 - T 89 -10.9 -3.9777 | opp_overlap 866525 866532, overlap 866532 TCGAATATTTACAAA TAAAAAACGGAAG CTTA CTTCCGTTTTTTT ATTTAGGTTAAAGAA TERM 1398 866532 - 866547 + T 100 -9 -5.96894 | opp_overlap 866525 866532, overlap 866525 TTTACAAATAAAAAA CGGAAG CTTA CTTCCG TTTTTTTATTTAGGT TERM 1399 866547 - 866532 - T 100 -9 -5.72622 | opp_overlap 866532 866525, overlap 866525 TTTACAAATAAAAAA CGGAAG CTTA CTTCCG TTTTTTTATTTAGGT APJL_0788 867471 - 866653 - | hypothetical protein TERM 1400 867695 - 867719 + r 95 -12.9 -4.16842 | opp_overlap 867693 867691 867695 867696, overlap 867696 AATTGTAAGAAGAGA TGCCGTCTGGA AGT TTCAGACGGCG TTTATTAGAGCTAAA TERM 1401 867696 - 867718 + r 100 -14.2 -3.09784 | opp_overlap 867695 867693 867691 867696, overlap 867695 ATTGTAAGAAGAGAT GCCGTCTGGA AGT TTCAGACGGC GTTTATTAGAGCTAA TERM 1402 867718 - 867696 - R 82 -12 -2.55813 | opp_overlap 867696 867695, overlap 867695 867693 867691 ATTGTAAGAAGAGAT GCCGTCTGGA AGT TTCAGACGGC GTTTATTAGAGCTAA APJL_0789 869785 - 867794 - | hypothetical protein TERM 1403 869331 - 869352 + g 80 -10.1 -3.60899 | opp_overlap 869331, overlap 869327 ATGAATGACATAAAA CTCCGAACC GATG GGGTCGGAG TTGCTTTACCTTTTA TERM 1404 869352 - 869331 - G 100 -10.1 -4.62002 | opp_overlap 869331 869327 ATGAATGACATAAAA CTCCGAACC GATG GGGTCGGAG TTGCTTTACCTTTTA APJL_0790 870210 - 869782 - | hypothetical protein APJL_0791 871295 - 870207 - | hypothetical protein APJL_0792 872688 - 871396 - | putative ATPase APJL_0793 873883 - 872996 - | transcriptional regulator APJL_0794 873988 - 874962 + | dioxygenase TERM 1405 876878 - 876895 + T 100 -9.9 -5.52909 | opp_overlap 876878 TAAACTCGTGAGAAA CCTAGCA GAAA TGCTAGG TTTTTTTACATATTA TERM 1406 876895 - 876878 - T 85 -9.9 -3.88583 | opp_overlap 876878 TAAACTCGTGAGAAA CCTAGCA GAAA TGCTAGG TTTTTTTACATATTA APJL_0798 877675 - 876908 - | hypothetical protein TERM 1407 876989 - 877009 + g 82 -4.7 -5.27923 | AACGCCAAATGCTCG GAGTTTCTC TCG GGGAAGTTC TTTTTTATCAAATTC TERM 1408 877170 - 877182 + g 74 -6.3 -4.41348 | overlap 877180 ACCAGATCGCCTACC GCAAT ATT ATTGC TTTGTTTCCAAAGAA sapD 878732 - 877758 - | peptide transport system ATP binding protein sapC 879696 - 878809 - | peptide transport system permease protein sapB 880648 - 879686 - | peptide transport system permease protein sapA 882345 - 880648 - | peptide transport periplasmic protein TERM 1409 881636 - 881619 - G 72 -7.7 -3.89346 | overlap 881621 TGCTCAGTTGATAAA CACCGGT TCCG ACCGGTA ATAAATCTAGTTGTG tyrR 883503 - 882355 - | transcriptional regulatory protein lpcA 883708 - 884292 + | phosphoheptose isomerase TERM 1410 884333 - 884360 + T 100 -7.1 -5.72118 | gap 1, opp_overlap 884333 AATTAATCTATTTAA GGGCTGATATCG TTTTC CGAT-TCAGCTC TTTTTTATATTTTTT pckA 886135 - 884525 - | phosphoenolpyruvate carboxykinase ftsB 886408 - 886686 + | cell division protein FtsB TERM 1411 886803 - 886822 + G 82 -5 -5.41143 | opp_overlap 886794 886803 ACAAAATAAAACGAT TTTAGAGC ATAC GCTCGAAA TTTTTTTAGCACATC ispD 886702 - 887388 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 1412 887610 - 887597 - g 71 -2.3 -5.10767 | TATGCAATACAAAAA TGCGG ATAG CCGTA AATTACTGATTGAAG ispF 887385 - 887861 + | hypothetical protein TERM 1413 887906 - 887874 - T 100 -13.7 -2.82289 | opp_overlap 887880, overlap 887880 TAAAATAGCGGAAAT TAAAAAGGCTAAACA TCA TGTTTAGCCTTTTGA TAAGCATAATGAATA TERM 1414 887880 - 887900 + T 95 -12.7 -4.26076 | opp_overlap 887874 887880 AGCGGAAATTAAAAA GGCTAAACA TCA TGTTTAGCC TTTTGATAAGCATAA TERM 1415 887900 - 887880 - T 100 -12.7 -4.99134 | opp_overlap 887880, overlap 887874 AGCGGAAATTAAAAA GGCTAAACA TCA TGTTTAGCC TTTTGATAAGCATAA APJL_0809 888014 - 887895 - | hypothetical protein TERM 1416 888498 - 888442 - R 86 -6.8 -5.10933 | opp_overlap 888442 TCACGCAAAATAAAA GCGGTTAAATTCCAGTTAAAATTTAC GACTT GCAAATTTATTGTGAAATTTAACCGC TTGTTACGATTTTTT APJL_0810 890506 - 888530 - | hypothetical protein TERM 1417 890457 - 890438 - G 80 -2.8 -5.46657 | opp_overlap 890443 890445, overlap 890421 890440 890443 GATCCCAACAAAAAA CAGTATTG GGAA CAACACAG AACGGCGTTGTTCCA TERM 1418 890524 - 890501 - G 100 -9.6 -4.74598 | gap 1 TAAATTTAAAATAAA GCGCATACCGA TAA TCGGC-TGCGC GAATAATATAGAATG ycbX 891332 - 890544 - | putative Fe-S protein TERM 1419 891681 - 891671 - g 80 -4.6 -5.10461 | CTTACTCAATAAAAA CGAC CAA GCCG AACTTTCCGATTACG APJL_0812 891477 - 891701 + | exodeoxyribonuclease VII small subunit ispA 891710 - 892603 + | geranyltranstransferase TERM 1420 892651 - 892669 + T 100 -10.3 -5.5454 | opp_overlap 892651 CTTAAAGCATATAAA GGCGAGA ATGAC TCTCGCC TTTTTGTTTATTTAC TERM 1421 892669 - 892651 - T 89 -11 -4.17516 | opp_overlap 892651 CTTAAAGCATATAAA GGCGAGAA TGA CTCTCGCC TTTTTGTTTATTTAC APJL_0814 893031 - 892687 - | hypothetical protein TERM 1422 893093 - 893110 + r 100 -9.9 -5.1287 | opp_overlap 893093 TATAAGATCAAAAAA GCACACT CGAA AGTGTGC TTTTTTCCGTATCAA TERM 1423 893110 - 893093 - R 100 -9.9 -5.30189 | opp_overlap 893093 TATAAGATCAAAAAA GCACACT CGAA AGTGTGC TTTTTTCCGTATCAA lysS 894634 - 893132 - | lysyl-tRNA synthetase TERM 1424 894764 - 894709 - R 93 -12.3 -3.72695 | gap 2, opp_overlap 894722, overlap 894712 ATTTTTGGTAGGAAA CAAGCGGTCGGATTTTCGCAAAAAGTT GCAA AACTTTC-GT-AAAATCCGACCGCTTA CCCATTACATCACGA TERM 1425 894761 - 894712 - R 91 -11.8 -4.00042 | gap 2, opp_overlap 894722, overlap 894709 TTTGGTAGGAAACAA GCGGTCGGATTTTCGCAAAAAGTT GCAA AACTTTC-GT-AAAATCCGACCGC TTACCCATTACATCA cafA 896244 - 894769 - | ribonuclease G TERM 1426 894984 - 894995 + g 70 -5.8 -4.30576 | opp_overlap 894982 894984 GAATTTCATAACACA CGGT TTCA ACCG TTTTAATCGTACCAC TERM 1427 896626 - 896640 + G 71 -10 -2.71918 | overlap 896625 896623 GGTGCATATTCGTGA TGCGGA TTG TCCGCA ATGTTTCTCGAATGG TERM 1428 897859 - 897842 - g 77 -4.9 -4.93296 | gap 1, opp_overlap 897842 TTAGTAGCAGAAAAA GGTTATGC AAT GCA-AACC TTACGTATCGGTGAG APJL_0817 896474 - 898237 + | hypothetical protein TERM 1429 898267 - 898248 - T 78 -9.2 -3.55622 | opp_overlap 898249, overlap 898249 GTTAAGCTTTTCAAA TGGTGGGC GAAA GCCCACCT TATTATCTACTATAT TERM 1430 898266 - 898249 - T 85 -12.7 -2.73159 | opp_overlap 898249, overlap 898248 TTAAGCTTTTCAAAT GGTGGGC GAAA GCCCACC TTATTATCTACTATA TERM 1431 898249 - 898266 + T 95 -12.7 -3.92001 | opp_overlap 898249 898248 TTAAGCTTTTCAAAT GGTGGGC GAAA GCCCACC TTATTATCTACTATA APJL_0818 900882 - 898270 - | type III restriction enzyme TERM 1432 898877 - 898889 + g 84 -6.2 -5.07652 | TTACAAAGCGTTTCA CGGG TTAGT CCCG TTTTCTTTTGGAGCA TERM 1433 899094 - 899108 + g 78 -5.7 -4.84539 | opp_overlap 899093 CAGCTTGTGCAAACG CCACT CGATA AGTGG TTTTATATTTGATTC TERM 1434 899175 - 899193 + g 71 -3.1 -5.00388 | opp_overlap 899175, overlap 899171 AATCTTTCCGATAAC GCACAAC CTTAC GTTCTGC TTTATTTTTGATTTG TERM 1435 900993 - 901013 + r 100 -14.1 -4.56914 | GCCAAATCTCCCCTT CCCCTCTTT GCT AAAGAGGGG TTTTAATTTAAATCA TERM 1436 901048 - 901036 - R 78 -4.1 -5.42265 | TTAAATCACAAAAAA TGCAA TAT TCGCA TCTTTCATCTGCAAT APJL_0819 902868 - 901021 - | adenine specific DNA methylase Mod TERM 1437 902990 - 903011 + H 73 -9.5 -2.87622 | overlap 902989 TAGGCATTATGATGT CCCTTTGAA AAAA TTCAAGGGG CTTATTCTACAAATC APJL_0820 903123 - 904085 + | hypothetical protein TERM 1438 904107 - 904124 + F 75 -7 -4.21471 | opp_overlap 904107 TACCTATCTGCTAAA GCCTCA CATTGC TGAGGC TTATTCTTTTGAACT APJL_0821 904231 - 904566 + | hypothetical protein TERM 1439 904618 - 904574 - T 100 -14.5 -3.24245 | opp_overlap 904577, overlap 904577 904587 GTATCTAGAAGCTAA CAAGCGGTCAAAATTTGCAAA TCT TTTGCAAAAATCAACCGCTTG TGTACGATGAGTAAT TERM 1440 904615 - 904577 - T 86 -10.4 -3.75766 | opp_overlap 904577, overlap 904574 904587 TCTAGAAGCTAACAA GCGGTCAAAATTTGCAAA TCT TTTGCAAAAATCAACCGC TTGTGTACGATGAGT TERM 1441 904605 - 904587 - T 81 -9 -4.12599 | opp_overlap 904577, overlap 904577 904574 AACAAGCGGTCAAAA TTTGCAAA TCT TTTGCAAA AATCAACCGCTTGTG mltA 905730 - 904633 - | murein transglycosylase A TERM 1442 906021 - 906041 + r 100 -15.5 -5.56264 | opp_overlap 906017 906016 CAACCAAAATTCCTA GCCCTCGAT AAT ATCGAGGGC TTTTTTGTATTTGCA TERM 1443 906495 - 906479 - R 74 -4.4 -4.99435 | TTGAACAATTAAAAA TGAAGC TGGCC GCCTCA GGGCTTTTTGCACAA TERM 1444 907677 - 907717 + r 100 -15 -4.4078 | opp_overlap 907685, overlap 907678 TTATACTCTATATTG TTCACGAAGTTATCCACA ATTAA TGTGAATAACTTCGTGAG TTTTGATTGCAAAAG TERM 1445 907678 - 907716 + r 100 -16.3 -3.24146 | opp_overlap 907685, overlap 907677 TATACTCTATATTGT TCACGAAGTTATCCACA ATTAA TGTGAATAACTTCGTGA GTTTTGATTGCAAAA TERM 1446 907874 - 907894 + r 76 -9.7 -3.06501 | CGAAATCGGTAGACG CAGCGGATT CAA AATCCGCCG TTGAATAAACGTGTC APJL_0825 908388 - 907975 - | transthyretin-like periplasmic protein TERM 1447 908912 - 908897 - g 84 -6.2 -5.03715 | opp_overlap 908895 908897 ACGAGCCGGAAAAAA TCCAAA ACCA TTTGGA TATGTTAATTAAAAA purR1 908587 - 909597 + | DNA-binding transcriptional repressor PurR APJL_0827 909620 - 910222 + | DedA family integral membrane protein TERM 1448 910254 - 910235 - T 100 -8.6 -4.74801 | opp_overlap 910235, overlap 910249 TAATTTGATGAAAAA GACCACTT ACAC AAGCGGTC TTTTTTTACATAAAA TERM 1449 910235 - 910254 + T 93 -6.4 -5.47218 | opp_overlap 910235 910249 TAATTTGATGAAAAA GACCACTT ACAC AAGCGGTC TTTTTTTACATAAAA TERM 1450 910316 - 910271 - T 93 -12.9 -3.31232 | gap 1, opp_overlap 910282, overlap 910249 910282 TTTTTTACATAAAAT GCCAAA-ACAAACCCCAAAGCA AAA TACTTTGGGGTTTTTATTTAGC TTAGATTAAATATCT TERM 1451 910304 - 910282 - T 100 -12.8 -4.69559 | opp_overlap 910282, overlap 910249 910271 AAATGCCAAAACAAA CCCCAAAGCA AAA TACTTTGGGG TTTTTATTTAGCTTA TERM 1452 910282 - 910304 + T 100 -10.6 -5.33026 | opp_overlap 910249 910282 910271 AAATGCCAAAACAAA CCCCAAAGCA AAA TACTTTGGGG TTTTTATTTAGCTTA gyrB 912754 - 910322 - | DNA gyrase subunit B TERM 1453 912952 - 912912 - R 84 -3.4 -5.68438 | gap 1 TTAGGAAATAAAAAA GCGGCT-AACTTTCTTGGA AAAA TCTCAGAAAATTCAACCGC TTACTCTTTTTGCAT ubiA 913848 - 912967 - | 4-hydroxybenzoate octaprenyltransferase glpR 914609 - 913848 - | glycerol-3-phosphate regulon repressor TERM 1454 914642 - 914661 + r 100 -12.2 -4.75776 | opp_overlap 914642 AAGTTTTCAAAAAAA TGACCGCT TACC AGCGGTCA TTTTTAACTTAAATT TERM 1455 914661 - 914642 - R 100 -12.2 -5.41746 | opp_overlap 914642 AAGTTTTCAAAAAAA TGACCGCT TACC AGCGGTCA TTTTTAACTTAAATT purB 916044 - 914677 - | adenylosuccinate lyase TERM 1456 916075 - 916099 + r 88 -10.8 -3.77014 | opp_overlap 916066 916077, overlap 916067 916078 AATAAATGTTCGGAA CAGGTTCTCC ATTAC GGAGAACTTG TTTAAATACTTTTGT TERM 1457 916078 - 916096 + r 80 -8.9 -3.99347 | opp_overlap 916077, overlap 916075 916067 AAATGTTCGGAACAG GTTCTCC ATTAC GGAGAAC TTGTTTAAATACTTT APJL_0832 916733 - 916101 - | hypothetical protein TERM 1458 916782 - 916772 - R 72 -4 -4.98103 | opp_overlap 916772, overlap 916779 TAAGAAAAGATAAAA TCAA AAA TTGA TTGTCAATATAACAC TERM 1459 916789 - 916779 - R 74 -4 -5.15526 | opp_overlap 916772, overlap 916772 AGATAAAATCAAAAA TTGA TTG TCAA TATAACACTTTTTTG TERM 1460 916855 - 916880 + r 76 -7.5 -4.11371 | opp_overlap 916856, overlap 916856 916858 TGAAAAGAATAGAAA AGACGCCAACG TAAC CGTTTGCGTCC TTTTAAAGCGTATTG TERM 1461 916879 - 916856 - R 100 -11 -4.88288 | opp_overlap 916856 916855 916858 GAAAAGAATAGAAAA GACGCCAACG TAAC CGTTTGCGTC CTTTTAAAGCGTATT TERM 1462 916856 - 916879 + r 79 -11 -3.06341 | opp_overlap 916856, overlap 916855 916858 GAAAAGAATAGAAAA GACGCCAACG TAAC CGTTTGCGTC CTTTTAAAGCGTATT cydC 918565 - 916898 - | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 1463 917681 - 917667 - G 77 -3.5 -5.22039 | CCTAAATGTAAAAAA GCCAA GCCAA TCGGC ATTAAAATTTCCGCC TERM 1464 918423 - 918409 - G 73 -5.6 -4.48792 | overlap 918411 AGAAGTTAAAAATAA TTGCCG AAC CGGCTA AAAATGATGCCGATA TERM 1465 918532 - 918516 - G 82 -7.9 -4.47456 | ATACCTAATAACAAA CGTCCCC AAT GGGTACG ATAAAGAGAGAGGAA cydD 920249 - 918576 - | cysteine/glutathione ABC transporter membrane/ATP-binding component APJL_0835 920503 - 920336 - | hypothetical protein TERM 1466 920458 - 920415 - GR 100 -12.6 -5.08824 | opp_overlap 920418, overlap 920418 GGTTGATCGAAAAAA TAAGCGGTCCGTTTTGCCAA AAAA TTCACAAAACGAACCGCTTG CTCAAAATAGTTGAT TERM 1467 920418 - 920455 + gr 77 -9.9 -3.16039 | opp_overlap 920415 920418 TGATCGAAAAAATAA GCGGTCCGTTTTGCCAA AAAA TTCACAAAACGAACCGC TTGCTCAAAATAGTT TERM 1468 920455 - 920418 - GR 100 -14.3 -4.64763 | opp_overlap 920418, overlap 920415 TGATCGAAAAAATAA GCGGTCCGTTTTGCCAA AAAA TTCACAAAACGAACCGC TTGCTCAAAATAGTT APJL_0836 924437 - 920478 - | hypothetical protein TERM 1469 922943 - 922912 - GR 75 -8.6 -3.59979 | opp_overlap 922913, overlap 922913 CCTTTCGACTGTAAA CCGCCGGAAAGTAC CGCC GTCCATTCCGGCGC AAGCGATTTGGTATT TERM 1470 922942 - 922913 - GR 84 -12.1 -2.75844 | opp_overlap 922913, overlap 922912 CTTTCGACTGTAAAC CGCCGGAAAGTAC CGCC GTCCATTCCGGCG CAAGCGATTTGGTAT TERM 1471 923257 - 923246 - GR 79 -7.2 -4.37211 | opp_overlap 923246, overlap 923235 TAAACGGATAAGAAA CCGC ATCA GCGG TTAAATGCAGATTAA TERM 1472 923722 - 923732 + gr 70 -6.8 -4.05788 | overlap 923704 GTCAATAGCGGTTGA GCCA ATT TGGC TTTAATTTCCGCCCA TERM 1473 924469 - 924486 + r 77 -9.9 -3.15292 | opp_overlap 924469 924479 CCTGATACGAAGAAA GCGGATA AATT TATCCGC TTGAATAATATTTAT TERM 1474 924486 - 924469 - R 86 -9.9 -4.29106 | opp_overlap 924469, overlap 924479 CCTGATACGAAGAAA GCGGATA AATT TATCCGC TTGAATAATATTTAT APJL_0837 926324 - 924498 - | putative outer membrane protein TERM 1475 924640 - 924650 + g 70 -5.4 -4.41348 | CCGGCGTGTAAATCT TTCG TTT CGAA TTTATTTGAAGCCAG TERM 1476 925354 - 925373 + g 75 -3.4 -5.09426 | GATTCAATATTATGA CCGCGGCT ATTC AGCCAAGG TTTTTTCCAGTTCAA APJL_0838 927020 - 926340 - | hypothetical protein TERM 1477 926748 - 926732 - G 71 -2.3 -5.09762 | TGTCAAGAAAGAAAA GTTGT TGTTTAG ACAAC TCCGTCATTAAATGC TERM 1478 927131 - 927092 - R 76 -9.4 -3.42996 | overlap 927128 TATCATCTATCACAA TCGCTAATTTTCCCGCTT GAGC AAGCGGTGAAATCAGCAA CAAAATTTGCCAAAA APJL_0839 928387 - 927188 - | membrane-bound metallopeptidase TERM 1479 927786 - 927806 + g 77 -6.2 -4.68612 | gap 1, opp_overlap 927785 GTTTTATTAATTGAG CGCAACGTG GTTT CACGTT-CG TTTTGTACTTTCTTT TERM 1480 927991 - 927975 - G 72 -7.9 -3.80174 | opp_overlap 927975 927974 ATATGCGCATAATAA GCGGTCA TTC TGTCCGC ATTTTTAGCACTTTC gpmA 928566 - 929249 + | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase TERM 1481 929297 - 929274 - T 100 -11 -5.27335 | opp_overlap 929274 TTCCTCAAACAAAAA CGCTCGAAGC CAAA ACTCCGAGCG TTTCTTTTTGCAAAA TERM 1482 929274 - 929297 + T 95 -8.1 -4.85782 | opp_overlap 929274 TTCCTCAAACAAAAA CGCTCGAAG CCAAAA CTCCGAGCG TTTCTTTTTGCAAAA APJL_0841 930064 - 929333 - | lysine efflux permease udk 930086 - 930739 + | uridine kinase TERM 1483 931303 - 931290 - g 75 -3.1 -5.19879 | gap 1, opp_overlap 931291 931299, overlap 931284 931291 CGCCAAATATAAAAA CCAGCA AAG TGC-GG TTTCCAGCCGAATTA dcd 930748 - 931332 + | deoxycytidine triphosphate deaminase APJL_0844 931955 - 931401 - | transcriptional regulator TERM 1484 932032 - 932051 + H 76 -2.1 -5.51165 | TATATTGATTATTAT TGATTGC AGATAA GCGGTCA TTTTTTTAGAATTTT acrA2 932096 - 933157 + | membrane-fusion protein TERM 1485 933450 - 933477 + G 88 -9.3 -4.25283 | gap 1, overlap 933453 GCAAAAATCTCTATC TC-ACGTTGTCG ATTTA CGACAACGTCGA TTTTCATGCGCGCCT TERM 1486 933453 - 933473 + G 77 -11.2 -2.77781 | overlap 933450 AAAATCTCTATCTCA CGTTGTCG ATTTA CGACAACG TCGATTTTCATGCGC TERM 1487 934046 - 934066 + G 77 -10.5 -3.21912 | GTCAGTTTTGAGATT GCCAAAGGT GAA ATCTTTGGC TTCCTCGGTTCAAAC ccmA1 933161 - 935902 + | ABC-type multidrug transport system, ATPase component TERM 1488 936410 - 936425 + G 72 -7.6 -3.86015 | opp_overlap 936404 TTTATATAACCCTAA CCATTC AAGC GAATGG TTTATGGGAACGGTA APJL_0847 935904 - 937028 + | ABC-type multidrug transport system, permease component tolC 937045 - 938439 + | outer membrane protein TERM 1489 938505 - 938476 - T 100 -9.5 -4.89838 | opp_overlap 938483, overlap 938483 GTAATAAATACAAAA CAAAAAAGAGATC CGAA GATCTCTTTTTTT ATGTCGCTGGATTAG TERM 1490 938498 - 938483 - T 100 -7.6 -5.8901 | opp_overlap 938483, overlap 938476 ATACAAAACAAAAAA GAGATC CGAA GATCTC TTTTTTTATGTCGCT TERM 1491 938483 - 938498 + T 100 -7.6 -5.72616 | opp_overlap 938483 938476 ATACAAAACAAAAAA GAGATC CGAA GATCTC TTTTTTTATGTCGCT pntB 939965 - 938517 - | pyridine nucleotide transhydrogenase pntA 941514 - 939976 - | NAD(P) transhydrogenase subunit alpha TERM 1492 940586 - 940574 - G 70 -7.7 -3.66095 | opp_overlap 940574 940570 AAACGTGCAGGGAAA TCGGT ATA ACCGA TAACTTTTACTTGAT APJL_0851 941719 - 942447 + | tRNA/rRNA methyltransferase TERM 1493 942454 - 942507 + T 95 -11.4 -4.63928 | opp_overlap 942459, overlap 942459 GGAAAATAAAGTATA AAAAACTCCAATTAACCTTTTATA AATTAG TTTAAAAGGTTAATTGGAGTTTAA TTTTTGCGGTAATCT TERM 1494 942459 - 942502 + T 100 -15.7 -4.32649 | opp_overlap 942459, overlap 942454 ATAAAGTATAAAAAA CTCCAATTAACCTTTTATA AATTAG TTTAAAAGGTTAATTGGAG TTTAATTTTTGCGGT TERM 1495 942502 - 942459 - T 100 -15.7 -5.43621 | opp_overlap 942454 942459 ATAAAGTATAAAAAA CTCCAATTAACCTTTTATA AATTAG TTTAAAAGGTTAATTGGAG TTTAATTTTTGCGGT APJL_0852 943631 - 942540 - | hypothetical protein APJL_0853 944791 - 943700 - | hypothetical protein TERM 1496 944687 - 944700 + g 76 -6.7 -4.56358 | AGATAAATGGTTGTT CGTTG AGTG CAACG TTTTCTGTAAGTGTA APJL_0854 945843 - 945004 - | 7-cyano-7-deazaguanine reductase TERM 1497 945485 - 945509 + g 72 -10.1 -2.81727 | overlap 945484 945487 ACTTGACCGCTTGCA CATTGGCTGAG ATC TTTAGCCAATG CTTGTTCCACTTGTT TERM 1498 945724 - 945740 + g 70 -9.5 -2.78679 | overlap 945723 TTGTTCGGTAATCCC TAAACCG TCA CGGTTTA ATTTACGTGGAACAG APJL_0855 946481 - 945933 - | D,D-heptose 1,7-bisphosphate phosphatase TERM 1499 946000 - 946010 + g 71 -8.2 -3.57144 | TTCGCTTCGCCTTCT GCGG TAA CCGC TTTACCGGTACGCAC bcp 946951 - 946481 - | thioredoxin-dependent thiol peroxidase TERM 1500 947000 - 946973 - R 100 -14.3 -5.4477 | opp_overlap 946970 AAATTCCTAAAAAAA GACCGCTTGTA TTCTAC TACAAGCGGTC AAATCTTAAAATGAA APJL_0857 947225 - 947016 - | hypothetical protein APJL_0858 948495 - 947338 - | coproporphyrinogen III oxidase TERM 1501 948703 - 948687 - H 74 -3.7 -5.22039 | TTTAAATCTAAAAAA GAACACT ATC ATTGTTC AGATTAAGGTTGTGC TERM 1502 948815 - 948847 + G 77 -10.5 -3.182 | overlap 948843 ATGAAGCTTCTTGCC GGTGTCGGAGCAGGC TTT GCATTCTCCGGTACC TTAGGTACTTTCTCT TERM 1503 948843 - 948855 + G 76 -7.7 -4.10164 | overlap 948815 GCTTTGCATTCTCCG GTACC TTA GGTAC TTTCTCTAATAATGC TERM 1504 950010 - 950024 + G 72 -9.2 -3.08798 | overlap 949990 AAGTGGTTATCGCAC CGGGCG ATC CGTCCG TATTCGGTAACGACT APJL_0859 948758 - 950332 + | putative ABC transporter periplasmic binding protein TERM 1505 950345 - 950373 + F 73 -8.9 -3.43338 | opp_overlap 950345 950347, overlap 950347 TAACCTCTAATAAAA TGCCCTTTGTCGT CCA AAGGCAAAGGGTA TTACTTAATATAACT TERM 1506 950366 - 950345 - f 71 -5.1 -4.65747 | opp_overlap 950345 950347, overlap 950347 TAACCTCTAATAAAA TGCCCTTTG TCGT CCAAAGGCA AAGGGTATTACTTAA TERM 1507 950347 - 950371 + F 75 -9.3 -3.28487 | opp_overlap 950345 950347, overlap 950345 ACCTCTAATAAAATG CCCTTTGTCGT CCA AAGGCAAAGGG TATTACTTAATATAA APJL_0860 950431 - 951384 + | ABC transporter, permease protein TERM 1508 952855 - 952810 - g 71 -3.4 -5.03314 | gap 2 TCGATCCGGAAAAAA CGCTTAACCGTTATCCACACGA GCTT TCAGGCGGACAAC-GTCA-GCG AGTCTTAATTGCCAT APJL_0861 951384 - 953357 + | ABC transporter, ATP-binding protein and permease protein APJL_0862 953361 - 954167 + | ABC transporter, ATP-binding subunit TERM 1509 954181 - 954199 + F 100 -11.7 -5.02323 | AATTTATGCTACTCA GGGCAGG TTTAT CCTGCCC TTTTATTTATACTGA sdhA 954217 - 955815 + | succinate dehydrogenase/fumarate reductase,flavoprotein subunit TERM 1510 955859 - 955831 - T 100 -13.3 -5.34632 | opp_overlap 955835, overlap 955835 AACAAAATACAAAAA TAAAGGGCAAGAT TTT ATCTTGCCCTTTT GATCATCCGTTTAGC TERM 1511 955855 - 955835 - T 100 -14.1 -5.0707 | opp_overlap 955835, overlap 955831 AAATACAAAAATAAA GGGCAAGAT TTT ATCTTGCCC TTTTGATCATCCGTT TERM 1512 955835 - 955855 + T 100 -14.1 -4.31692 | opp_overlap 955835 955831 AAATACAAAAATAAA GGGCAAGAT TTT ATCTTGCCC TTTTGATCATCCGTT APJL_0864 957025 - 955877 - | methionine synthase II TERM 1513 956183 - 956172 - G 73 -5.8 -4.45738 | overlap 956181 TACTCTAAGAAGAAA CCGT CAAT ACGG CAGGTACCGAATAAA TERM 1514 956572 - 956616 + g 95 -8 -5.24129 | opp_overlap 956572 956570 956587 TAATTAAATGTAACA TTGACGGCGAAG-GAATGGTGA ATT TCACC-TCCGTTTCGCCGGCAA TTTTTTGTAGCGAAC TERM 1515 957929 - 957915 - g 82 -5 -5.4111 | AACAATTACAAAAAA TGGCAA AAA TTACCA ATGTTAAAGTACCGC metF 957254 - 958135 + | 5,10-methylenetetrahydrofolate reductase TERM 1516 958177 - 958142 - T 91 -11.4 -3.84185 | opp_overlap 958147, overlap 958147 CCGACCTAAATAGAA CAAAACGCACTAAATC CTAA AATTTAGTGCGTTTTT AAGTAACAACAAGCG TERM 1517 958172 - 958147 - T 100 -11.3 -4.95302 | opp_overlap 958147, overlap 958142 CTAAATAGAACAAAA CGCACTAAATC CTAA AATTTAGTGCG TTTTTAAGTAACAAC TERM 1518 958147 - 958172 + T 95 -10.6 -4.65895 | opp_overlap 958147 958142 CTAAATAGAACAAAA CGCACTAAAT CCTAAA ATTTAGTGCG TTTTTAAGTAACAAC TERM 1519 958366 - 958330 - T 93 -14 -2.66733 | opp_overlap 958335, overlap 958333 TGCTAATTGACACCA TAAGACCTCCATAAAC ATACA GTTTATCGAGGTCTTA ACAAAAAAGCTGAGA TERM 1520 958363 - 958333 - T 84 -11.3 -3.48288 | opp_overlap 958335, overlap 958330 TAATTGACACCATAA GACCTCCATAAAC ATACA GTTTATCGAGGTC TTAACAAAAAAGCTG hbpA1 960006 - 958414 - | heme-binding protein A precursor TERM 1521 960177 - 960165 - H 76 -3.5 -5.40004 | overlap 960158 GAGGAAAGTAAAAAA TTTAA CGC TTAAA AAACAAAGTTAAGCA TERM 1522 961404 - 961417 + G 79 -8.1 -4.39002 | opp_overlap 961403 961404 GTAGCAACCATTAAC CCGAG TATT CTCGG TTTTATCGAAAGTTT sdaC 960363 - 961592 + | serine transporter TERM 1523 961625 - 961660 + F 78 -6.4 -4.62336 | gap 1 CCTTTCCAATTTTCA GGCAATAAAC-CTAA TATATCT TTGGTGTTTATTGCC TTTTTAACATAGAGT sdaA 961688 - 963067 + | L-serine dehydratase TERM 1524 963110 - 963138 + T 83 -7.4 -4.78597 | opp_overlap 963114, overlap 963114 CGACTTATGATTTGA AGAACTGAGCGG ATTAA CCGCTCAGTTGA TTTATTTCTTATTAG TERM 1525 963134 - 963114 - T 95 -12.6 -3.66018 | opp_overlap 963110 963114 TTATGATTTGAAGAA CTGAGCGG ATTAA CCGCTCAG TTGATTTATTTCTTA TERM 1526 963114 - 963134 + T 95 -12.6 -3.81574 | opp_overlap 963114, overlap 963110 TTATGATTTGAAGAA CTGAGCGG ATTAA CCGCTCAG TTGATTTATTTCTTA TERM 1527 963204 - 963235 + T 100 -11.8 -5.85178 | opp_overlap 963209 TAGGATAATGAATTA AAAAACCTCGAATA TCAT TATTCGAGGTTTTG TTTTTTTTAACTATT TERM 1528 963230 - 963209 - T 100 -11.7 -5.32565 | opp_overlap 963204 TAATGAATTAAAAAA CCTCGAATA TCAT TATTCGAGG TTTTGTTTTTTTTAA APJL_0869 965261 - 963246 - | 5-methylaminomethyl-2-thiouridine methyltransferase TERM 1529 964840 - 964876 + g 89 -6.6 -5.252 | gap 1, opp_overlap 964838 TCGAAATGATAACGC TGACAGCCTGTTTGGCG AGGT TGCCAA-CAAGCGGTCA TTTTTTGTGAAAGTG TERM 1530 965321 - 965270 - R 100 -13.1 -4.21974 | opp_overlap 965270 965277 965277, overlap 965277 TTACCACGGAATAAA CGGAAAAGCACGGAAGTTACTGA TAACAT TCTGTGCTTTCCGTGCTTTTCCG CAGTAACAGATTAGA TERM 1531 965270 - 965311 + r 79 -11.2 -3.08508 | opp_overlap 965270 965277, overlap 965277 965277 TTACCACGGAATAAA CGGAAAAGCACGGAA-GTTA CTGA TAACATTCTGTGC-TTTCCG TGCTTTTCCGCAGTA TERM 1532 965277 - 965314 + r 73 -7 -4.09685 | opp_overlap 965277 965270, overlap 965277 965270 GGAATAAACGGAAAA GCACGGAAGTTACTGA TAACAT TCTGTGCTTTCCGTGC TTTTCCGCAGTAACA TERM 1533 965277 - 965305 + r 72 -7.6 -3.76411 | gap 1, opp_overlap 965277 965270, overlap 965270 965277 GGAATAAACGGAAAA GCACGGAA-GTTA CTGA TAACATTCTGTGC TTTCCGTGCTTTTCC TERM 1534 965305 - 965277 - R 70 -5.4 -4.42851 | gap 1, opp_overlap 965270 965277 965277, overlap 965270 GGAATAAACGGAAAA GCACGGAA-GTTA CTGA TAACATTCTGTGC TTTCCGTGCTTTTCC trpCF 966874 - 965465 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase APJL_0871 967052 - 967717 + | filamentation induced by cAMP protein Fic-like protein APJL_0872 967725 - 968036 + | hypothetical protein TERM 1535 968630 - 968617 - g 80 -4.5 -5.15969 | opp_overlap 968617 968618, overlap 968618 CTTTAACCGAAAAAA CCGGT TGCG ACCGA TTAATGCTACATTCG TERM 1536 968702 - 968674 - g 93 -11.1 -4.14739 | opp_overlap 968673, overlap 968693 TTACGCACCCGAAAA CGGCGCAAAAAAT CGA AATTTTTGCACCG CTTGATAAACAATGG APJL_0873 968037 - 968780 + | tRNA pseudouridine synthase C APJL_0874 968782 - 968946 + | hypothetical protein APJL_0875 968943 - 969395 + | hypothetical protein TERM 1537 969432 - 969397 - T 71 -4.8 -4.59212 | gap 1, opp_overlap 969399 969402, overlap 969402 AAGTAACCAAATAAA GCAAACGCCACTATGCA CGA TG-ATAGTGGCGTTCTT TTTATTTTAGTTTTT TERM 1538 969399 - 969430 + T 100 -9.6 -5.56372 | gap 1, opp_overlap 969397 969402, overlap 969402 GTAACCAAATAAAGC AAACGCCACTATGCA CGA TG-ATAGTGGCGTTC TTTTTATTTTAGTTT TERM 1539 969427 - 969402 - T 90 -11.3 -4.28115 | gap 1, opp_overlap 969399 969402, overlap 969397 ACCAAATAAAGCAAA CGCCACTATGCA CGA TG-ATAGTGGCG TTCTTTTTATTTTAG TERM 1540 969402 - 969427 + T 100 -11.3 -4.80077 | gap 1, opp_overlap 969402 969397, overlap 969399 ACCAAATAAAGCAAA CGCCACTATGCA CGA TG-ATAGTGGCG TTCTTTTTATTTTAG APJL_0876 970278 - 969439 - | hypothetical protein TERM 1541 970387 - 970370 - H 78 -6.3 -4.75954 | overlap 970371 AAAATCCAAAACAAA CTGCACA AATT TGTGCAA CGCGGTTTAGACAAT TERM 1542 971439 - 971454 + G 71 -6.8 -4.14472 | gap 1, opp_overlap 971438 971439 AATTAGTGCAAGAAG GCGGACG ACA CG-CCGC TTTTGACGGTATTGA APJL_0877 970382 - 971755 + | hypothetical protein TERM 1543 971759 - 971808 + F 79 -10.9 -2.79823 | opp_overlap 971765, overlap 971758 971756 971762 971765 971772 ATGTTGGAATAGTCA TCACAAGCGGTTATTTTTGCAAA ATTT TTCGCAAATTTAACCGCTTGTCA CTTGATTTTAAACGG TERM 1544 971762 - 971805 + F 85 -12.6 -2.66118 | opp_overlap 971765, overlap 971759 971758 971756 971765 971772 TTGGAATAGTCATCA CAAGCGGTTATTTTTGCAAA ATTT TTCGCAAATTTAACCGCTTG TCACTTGATTTTAAA TERM 1545 971802 - 971765 - f 80 -10.7 -3.44206 | opp_overlap 971762 971759 971758 971756 971765 971772 GAATAGTCATCACAA GCGGTTATTTTTGCAAA ATTT TTCGCAAATTTAACCGC TTGTCACTTGATTTT TERM 1546 971765 - 971802 + F 70 -8.5 -3.46808 | opp_overlap 971765, overlap 971762 971759 971758 971756 971772 GAATAGTCATCACAA GCGGTTATTTTTGCAAA ATTT TTCGCAAATTTAACCGC TTGTCACTTGATTTT APJL_0878 971810 - 971935 + | hypothetical protein TERM 1547 972302 - 972285 - g 75 -2 -5.2696 | gap 1, overlap 972288 GCAAAAGGTAAAAAA CTACACG ATAAA CGTG-AG GACATTAAAGACCGT smpB 971928 - 972368 + | SsrA-binding protein, small major protein B TERM 1548 972406 - 972422 + F 70 -3 -5.1287 | gap 1, opp_overlap 972405 972406, overlap 972406 972407 CAAGCACGGAACAAG C-GGTCA AATT TGACCCG TTTTTTGCCTCTCCG serS 972486 - 973793 + | seryl-tRNA synthetase TERM 1549 973814 - 973848 + T 90 -7.3 -5.09173 | opp_overlap 973814 973819, overlap 973819 973847 TATTCTTATCAAGTA GAAAAGCCAACTC AAATTTGCC GAGTTGGCTTTTA TTTTTTCAAATATTC TERM 1550 973819 - 973843 + T 95 -7.2 -5.42198 | opp_overlap 973814 973819, overlap 973814 TTATCAAGTAGAAAA GCCAACTC AAATTTGCC GAGTTGGC TTTTATTTTTTCAAA TERM 1551 973843 - 973819 - T 90 -8.6 -4.56607 | opp_overlap 973819 973814, overlap 973814 TTATCAAGTAGAAAA GCCAACTCAA ATTTG CCGAGTTGGC TTTTATTTTTTCAAA APJL_0881 975132 - 973864 - | aminobenzoyl-glutamate utilization protein TERM 1552 974432 - 974445 + g 74 -9.5 -3.30771 | ACTTGCGGAGCCGCA CCGGC ATGA GCCGG TTGTCCGAAATATCG TERM 1553 974767 - 974752 - G 70 -7.6 -3.71794 | opp_overlap 974751 ATTTAATGATGCAAA TCCCAA TTGA TTGGGA ATATGTGTATCCGAC APJL_0882 976518 - 975226 - | C4-dicarboxylate transporter TERM 1554 976289 - 976269 - G 71 -9.7 -2.68279 | opp_overlap 976267 976265 976269, overlap 976274 TAGTCAGCAAATGCA CCAAATGCG TAT CGCATTGGG TATATTTCATTACAT TERM 1555 976269 - 976289 + g 76 -9.7 -3.3487 | opp_overlap 976269 976274, overlap 976267 976265 TAGTCAGCAAATGCA CCAAATGCG TAT CGCATTGGG TATATTTCATTACAT pepE 977233 - 976529 - | peptidase E TERM 1556 977112 - 977134 + g 83 -9.2 -4.03078 | CGTACTCCCGCATAC GGTACGAAAG CGA CTTTCTTACC TTTATAATCTGCTAA TERM 1557 977334 - 977301 - H 76 -3.3 -5.36689 | opp_overlap 977302, overlap 977302 AAAGCAAAAACAAAA CTTCTATTTTTTGAC AGTT GTCACAAAATAAAAT ACGTTTCCTATAAAT TERM 1558 977816 - 977831 + G 75 -5.4 -4.79352 | ATATATGAAAGGTCA GCTCAA AATG TTGGGC TTTTCTTATGACTGG TERM 1559 979939 - 979923 - g 73 -8.7 -3.5394 | opp_overlap 979917 979916, overlap 979927 AAAGTTCGTGGTAAA GTTACCG TTT CGGCAAC AGCAACCGAAGATGA leuS 977484 - 980069 + | leucyl-tRNA synthetase TERM 1560 980100 - 980076 - f 70 -8.5 -3.38361 | opp_overlap 980079, overlap 980079 AAAGCCTAATAGCAA TGAGGGCGAAC TAT GTTCGCCCTTT ATTGTGAATATTACG TERM 1561 980079 - 980097 + F 100 -14.6 -4.35091 | opp_overlap 980076 980079 GCCTAATAGCAATGA GGGCGAAC TAT GTTCGCCC TTTATTGTGAATATT TERM 1562 980097 - 980079 - f 100 -14.6 -2.84723 | opp_overlap 980079, overlap 980076 GCCTAATAGCAATGA GGGCGAAC TAT GTTCGCCC TTTATTGTGAATATT rlpB 980169 - 980663 + | rare lipoprotein B holA 980772 - 981797 + | DNA polymerase III subunit delta yacG 982062 - 981874 - | zinc-binding protein coaE 982682 - 982044 - | dephospho-CoA kinase hopD 983342 - 982704 - | leader peptidase HopD TERM 1563 982862 - 982850 - G 70 -2.7 -4.92757 | CGATCAATAATAAAA GAAAA ACC TCTTC CAATGAGAATAAGGG hofC 984571 - 983369 - | protein transport protein HofC-like protein TERM 1564 983842 - 983860 + g 75 -2.4 -5.40072 | overlap 983845 ACATCCCGTTTTTTA TAGCGGTT AAA AATCGATA TTTTTTTGCAAAAAA TERM 1565 984076 - 984089 + g 100 -3.9 -5.92399 | TCAAAGTGACGACAG GATAA AACA TTATC TTTTTTATTTTCTTA hofB 985949 - 984555 - | protein transport protein HofB-like protein, pili/fimbriae biogenesis protein apfA 986413 - 985967 - | prepilin peptidase dependent protein D radA 986595 - 987974 + | DNA repair protein RadA TERM 1566 988009 - 987977 - T 78 -10.7 -3.06261 | opp_overlap 987983, overlap 987983 CGGCAATCTCTAATA CAAAAACAGACCG TGATAAG CGGTCTGTTTTAG TTAAAATCTTACGAA TERM 1567 987983 - 988003 + T 90 -9 -4.42639 | opp_overlap 987977 987983 TCTCTAATACAAAAA CAGACCGT GATAA GCGGTCTG TTTTAGTTAAAATCT TERM 1568 988003 - 987983 - T 100 -8.3 -5.0916 | opp_overlap 987983, overlap 987977 TCTCTAATACAAAAA CAGACCG TGATAAG CGGTCTG TTTTAGTTAAAATCT APJL_0894 988251 - 988018 - | hypothetical protein TERM 1569 988359 - 988375 + r 83 -5.9 -5.24647 | overlap 988360 TAAAGATTAATTGTT TGCTTAT AAA ATAAGCG TTTTATTTTCTCTCT folA 988866 - 988378 - | dihydrofolate reductase TERM 1570 989550 - 989537 - g 70 -9.5 -2.73619 | overlap 989536 AATCACGCCTGAAAT CCGCC AAAT GGCGG GCGGTAGCGTCACCG proB 988953 - 990044 + | gamma-glutamyl kinase TERM 1571 990512 - 990530 + G 100 -12.4 -5.15969 | TTATGACGGTATGTT CGGACCGG CAA CCGGTTCG TTTTTTACCTTAGCC TERM 1572 990651 - 990670 + G 70 -3.6 -4.81814 | overlap 990652 TTTATGTTGGGCGGT GCGATTTT ATGG AAAATCGG TTTTATTATGATGAT APJL_0897 990057 - 990833 + | permease TERM 1573 991006 - 990981 - g 100 -9.7 -4.4448 | AAAGGGGTAAATAAA GCGACCGATAA ATTG TTTCCGGTCGC TAACACGCCGCAAGC nth 990834 - 991433 + | endonuclease III TERM 1574 991488 - 991543 + F 100 -15.8 -2.74525 | opp_overlap 991491, overlap 991491 CTCTGTCTTGCGTAA CAAGCGGTGATATTTTCCCGAGGTTT TGCA AAATATTGTGAAAATATCATCGCTTG TCGTATATCATTTCA TERM 1575 991491 - 991540 + F 87 -11.7 -3.50893 | opp_overlap 991491, overlap 991488 TGTCTTGCGTAACAA GCGGTGATATTTTCCCGAGGTTT TGCA AAATATTGTGAAAATATCATCGC TTGTCGTATATCATT TERM 1576 992724 - 992735 + G 75 -5.8 -4.62069 | opp_overlap 992724 992731 GCCAGCCAAATATTA GCGA ACAT TCGC TTTTTCGAATCGGAC fadI 991677 - 992981 + | acetyl-CoA acetyltransferase fadJ 992991 - 995108 + | fatty oxidation complex, alpha subunit TERM 1577 995126 - 995147 + F 84 -4.4 -5.46657 | opp_overlap 995126 TACTTGACTAAAAAA CCGGAC TTTTACAATC GTCCGG TTTTTTATTAGAATC TERM 1578 995147 - 995126 - f 76 -4.4 -5.15634 | opp_overlap 995126 TACTTGACTAAAAAA CCGGAC TTTTACAATC GTCCGG TTTTTTATTAGAATC TERM 1579 995458 - 995443 - g 89 -6.2 -5.30686 | AAGACGGAGAAAAAA CCTTTA CGTT TAAAGG TAACGATAAAGTTTA TERM 1580 996006 - 995995 - g 70 -5.8 -4.25283 | ATTTTTCGATTAAAA CGGA TTGG TCCG AAGGTAACAAAACTG APJL_0901 995199 - 996614 + | hypothetical protein TERM 1581 996632 - 996689 + T 100 -15.3 -4.66537 | gap 1, opp_overlap 996633 996636, overlap 996633 ACTGAAAAGCCATAA ACAAGCGGTCTGTTTTAGGAAAGTATTT GCA AAATA-TTTCACAAAACAGACCGCTTGC TTTTGTCTTAAAGCC TERM 1582 996688 - 996633 - T 100 -21 -4.06179 | gap 1, opp_overlap 996632 996633, overlap 996636 CTGAAAAGCCATAAA CAAGCGGTCTGTTTTAGGAAAGTATTT GCA AAATA-TTTCACAAAACAGACCGCTTG CTTTTGTCTTAAAGC TERM 1583 996633 - 996688 + T 100 -18.8 -3.3944 | gap 1, opp_overlap 996633 996636, overlap 996632 CTGAAAAGCCATAAA CAAGCGGTCTGTTTTAGGAAAGTATTT GCA AAATA-TTTCACAAAACAGACCGCTTG CTTTTGTCTTAAAGC TERM 1584 996685 - 996636 - T 100 -16.9 -4.13814 | gap 1, opp_overlap 996633 996632, overlap 996633 AAAAGCCATAAACAA GCGGTCTGTTTTAGGAAAGTATTT GCA AAATA-TTTCACAAAACAGACCGC TTGCTTTTGTCTTAA APJL_0902 997629 - 996697 - | permease fdhD 998437 - 997631 - | formate dehydrogenase formation protein TERM 1585 998032 - 998051 + g 81 -4.2 -5.40474 | overlap 998033 998035 CGAATATTTGCGGAT TTACCGCT TGCA AGCGGTCG TTTTTTTGCAAAAAT bisC1 998857 - 999444 + | formate dehydrogenase, alpha subunit TERM 1586 999655 - 999665 + G 74 -6.8 -4.27519 | overlap 999645 TTTAACCGTACGGCA TCCG TTG CGGA TTTCTATTCTCCGAT TERM 1587 1000027 - 1000011 - g 70 -8.1 -3.59252 | overlap 1000009 CGGTACCAAACAAGA CAAATTC TTA GAATTTG CTCAAACCATCGCAT bisC2 999493 - 1001916 + | formate dehydrogenase, alpha subunit TERM 1588 1002463 - 1002451 - g 76 -7.7 -4.09685 | opp_overlap 1002451 CGGCATGTGTGAAAA CCTGT CCG ACAGG TGCTATTCGTTTCGG hybA1 1001916 - 1002815 + | formate dehydrogenase, beta subunit TERM 1589 1002854 - 1002827 - g 70 -7.1 -3.76534 | opp_overlap 1002834, overlap 1002830 GTAAGAAATTTGAAA TTACGAACGAT ACCAAA ATCGTTCGTCA TAAACCGCTTGCCCG fdnI 1002808 - 1003479 + | formate dehydrogenase, gamma subunit TERM 1590 1003485 - 1003529 + F 100 -14.8 -2.80784 | gap 1, opp_overlap 1003481 1003498, overlap 1003498 AAATAACTAATTCTT TTTAAAGATACAAGTGCGGTA AACT TACCGCACTT-TATTTTTAAA TACTTGCTAAATTTC TERM 1591 1003498 - 1003517 + F 100 -12.2 -4.89063 | opp_overlap 1003498, overlap 1003485 TTTTTAAAGATACAA GTGCGGTA AACT TACCGCAC TTTATTTTTAAATAC TERM 1592 1003517 - 1003498 - f 93 -12.2 -3.76232 | opp_overlap 1003485 1003498 TTTTTAAAGATACAA GTGCGGTA AACT TACCGCAC TTTATTTTTAAATAC TERM 1593 1003531 - 1003569 + F 75 -9.1 -3.53012 | opp_overlap 1003530 1003532, overlap 1003532 ACTTTATTTTTAAAT ACTTGCTAAATTTCTTT TGACT AAGGGAATTTAGCAAGA TTTAACGAGAGAACA TERM 1594 1003532 - 1003568 + F 85 -12.6 -2.71712 | opp_overlap 1003532 1003530, overlap 1003531 CTTTATTTTTAAATA CTTGCTAAATTTCTTT TGACT AAGGGAATTTAGCAAG ATTTAACGAGAGAAC TERM 1595 1003568 - 1003532 - f 70 -8.2 -3.36515 | opp_overlap 1003531 1003532, overlap 1003530 CTTTATTTTTAAATA CTTGCTAAATTTCTTT TGACT AAGGGAATTTAGCAAG ATTTAACGAGAGAAC fdhE 1003589 - 1004506 + | formate dehydrogenase accessory protein FdhE TERM 1596 1004523 - 1004546 + F 100 -14 -4.34402 | opp_overlap 1004523 1004526 CCCTTCCTTTACTAA TAAGCGGTCA AATT TGACCGCTTA TTTTCATCTAAACAG TERM 1597 1004546 - 1004523 - f 100 -14 -3.14132 | opp_overlap 1004523, overlap 1004526 CCCTTCCTTTACTAA TAAGCGGTCA AATT TGACCGCTTA TTTTCATCTAAACAG TERM 1598 1004543 - 1004526 - f 88 -11.3 -3.71848 | opp_overlap 1004523, overlap 1004523 TTCCTTTACTAATAA GCGGTCA AATT TGACCGC TTATTTTCATCTAAA folD 1005109 - 1005966 + | methylenetetrahydrofolate dehydrogenase (NADP+)/ methenyltetrahydrofolate cyclohydrolase TERM 1599 1005990 - 1006011 + F 100 -11.7 -5.19261 | opp_overlap 1005990 TTATTCCGCAATTAA GCCTCTTTT GAAA AAAAGAGGC TTTTTTACTGAATTT TERM 1600 1006011 - 1005990 - f 85 -11.7 -3.34344 | opp_overlap 1005990 TTATTCCGCAATTAA GCCTCTTTT GAAA AAAAGAGGC TTTTTTACTGAATTT APJL_0910 1006111 - 1007649 + | putative oxalate/formate antiporter TERM 1601 1007701 - 1007718 + T 95 -8.4 -4.83246 | opp_overlap 1007701 TTATCTAACAAAAAA CCCCGT TATATC ACGGGG TTTCTTTCTTTATCG TERM 1602 1007718 - 1007701 - T 100 -8.4 -5.4833 | opp_overlap 1007701 TTATCTAACAAAAAA CCCCGT TATATC ACGGGG TTTCTTTCTTTATCG dapA 1008634 - 1007747 - | dihydrodipicolinate synthase TERM 1603 1008790 - 1008758 - R 100 -10 -5.65927 | opp_overlap 1008758 1008762 TACGGAAAGAAAAAA TAAACCCGACACTA TTAAT TCATGTCGGGTTTA TTTTAATCGTATAAA TERM 1604 1008758 - 1008790 + r 78 -7.9 -4.33274 | opp_overlap 1008758, overlap 1008762 TACGGAAAGAAAAAA TAAACCCGACA CTATTAATTCA TGTCGGGTTTA TTTTAATCGTATAAA TERM 1605 1008762 - 1008786 + r 71 -4.3 -4.73614 | opp_overlap 1008758, overlap 1008758 GAAAGAAAAAATAAA CCCGACA CTATTAATTCA TGTCGGG TTTATTTTAATCGTA lpxL 1009734 - 1008793 - | lipid A biosynthesis lauroyl acyltransferase TERM 1606 1009788 - 1009776 - H 70 -3.4 -4.94972 | opp_overlap 1009776 GATTATAATCAAAAA CACT AAAAA AGTG TTAAGTAGATCAAAT APJL_0913 1009899 - 1010213 + | putative sigma 54 modulation protein TERM 1607 1010240 - 1010262 + T 100 -12.8 -5.28481 | opp_overlap 1010240 ACAATTGAAGATAAA GCCAAATCGA ATT TCGGTTTGGC TTTTTTAATTAACTA TERM 1608 1010262 - 1010240 - T 90 -10.6 -4.24397 | opp_overlap 1010240 ACAATTGAAGATAAA GCCAAATCGA ATT TCGGTTTGGC TTTTTTAATTAACTA truA 1011059 - 1010271 - | tRNA pseudouridine synthase A TERM 1609 1010376 - 1010355 - G 70 -7.1 -3.86653 | ATCCACCAAATATAA GCCTTCCGC CTTT GCGGTCGGC GCCGCTAAGGTACGA TERM 1610 1010941 - 1010963 + g 73 -8.4 -3.66028 | opp_overlap 1010932 AAAACCTCTATCGGC GCGTTGGCGA CAA TCGACAATGC TTCTTCCAGCTTCTG TERM 1611 1011130 - 1011082 - R 100 -10.6 -5.21709 | gap 1, opp_overlap 1011084 1011087 1011096 CTCTACATCAAAAAA GATAAGCGGTTAAATTTT-GCAA AAAT TTGCCAAAATCAGACCGCTTATC CGTTCAATTATTTAT folE 1011794 - 1011138 - | GTP cyclohydrolase I TERM 1612 1011211 - 1011194 - G 71 -4.7 -4.63218 | overlap 1011196 TGTCTTCTAAGAAAA CGCCGCC GAAT GCCGACG TTACCGTATAGCTAT kdkA 1011895 - 1012599 + | 3-deoxy-D-manno-octulosonic-acid kinase TERM 1613 1012640 - 1012616 - T 84 -4.4 -5.5112 | opp_overlap 1012616 1012619 GCTATTAATAAAAAA GAAGAAAG TTTTAAAGG CTTTCTTC TTTAGCTATTTGAAA TERM 1614 1012616 - 1012640 + T 78 -8.7 -3.81137 | opp_overlap 1012616, overlap 1012619 GCTATTAATAAAAAA GAAGAAAGTTT TAA AGGCTTTCTTC TTTAGCTATTTGAAA APJL_0917 1013017 - 1012679 - | hypothetical protein wbbJ 1013651 - 1013076 - | acetyltransferase TERM 1615 1013733 - 1013675 - R 100 -18.6 -4.56597 | opp_overlap 1013677 1013680, overlap 1013680 TCCGGTTTTCAAAAA GATAAGCGGTCAAATTCCTCTAATTTTT GCA AAAATTTAGAGAAATTTGACCGCTTGTT ATTATTTCAAGTTAG TERM 1616 1013677 - 1013731 + r 100 -21.2 -4.1023 | opp_overlap 1013675 1013680, overlap 1013680 CGGTTTTCAAAAAGA TAAGCGGTCAAATTCCTCTAATTTTT GCA AAAATTTAGAGAAATTTGACCGCTTG TTATTATTTCAAGTT TERM 1617 1013728 - 1013680 - R 100 -22.9 -4.07746 | opp_overlap 1013680 1013677, overlap 1013675 TTTTCAAAAAGATAA GCGGTCAAATTCCTCTAATTTTT GCA AAAATTTAGAGAAATTTGACCGC TTGTTATTATTTCAA TERM 1618 1013680 - 1013728 + r 100 -20.7 -4.16033 | opp_overlap 1013675 1013680, overlap 1013677 TTTTCAAAAAGATAA GCGGTCAAATTCCTCTAATTTTT GCA AAAATTTAGAGAAATTTGACCGC TTGTTATTATTTCAA APJL_0919 1014877 - 1013735 - | alpha/beta fold family hydrolase TERM 1619 1014855 - 1014838 - G 70 -5.5 -4.51197 | opp_overlap 1014838 1014839, overlap 1014839 TAGAACTAAGTAAAA GCGCACT AGAA AGTGCGG TTAATTTAGTACGAA TERM 1620 1014854 - 1014839 - G 71 -9 -3.29634 | opp_overlap 1014839 1014838, overlap 1014838 AGAACTAAGTAAAAG CGCACT AGAA AGTGCG GTTAATTTAGTACGA TERM 1621 1015225 - 1015237 + G 93 -9.1 -4.57073 | opp_overlap 1015224 TTATCACTAACTCAC GCTGG TAA CCAGC TTTTTCAAACCGCTG APJL_0920 1015036 - 1015920 + | putative transcriptional regulator TERM 1622 1015965 - 1015923 - T 81 -7.3 -4.67982 | gap 1, opp_overlap 1015923 GCTTAGGGAATAAAA TAAGCGGT-AATTTTTGCAA CAAT CTACAAAATTTTACCGCTTA TCGTTTATTACCAGC plpB 1016791 - 1015973 - | outer membrane lipoprotein 2 precursor TERM 1623 1016876 - 1016821 - R 95 -7.2 -5.25803 | gap 1, opp_overlap 1016821 1016854 AATCTGGATAAAAAA CAAGCGGTAAAATTT-TCCTATACTTT TGC AAAATTTAGTTTAAATTTCACCGCTTG TTTAACGATACTTGT hlpA 1017726 - 1016905 - | outer membrane lipoprotein precursor TERM 1624 1017173 - 1017183 + g 73 -2.6 -5.15117 | GAAGTATCTACTTCT TTAA TGT TTAA TTTTTTCGGATTTTC APJL_0923 1018429 - 1017752 - | ABC transporter permease protein TERM 1625 1018220 - 1018205 - G 75 -5.4 -4.76233 | gap 1, opp_overlap 1018205 TAACAAAATAATAAA CGGTACG GAA CG-ACCG ATATTAATAATCACA metN 1019453 - 1018419 - | DL-methionine transporter ATP-binding subunit TERM 1626 1019588 - 1019633 + r 72 -7.7 -3.82117 | opp_overlap 1019592, overlap 1019586 1019592 CATTCTAAGAACGAA AAAAGCGGTTGGATTTGCAAG ATTT TTTACAAATTCAACCGCTTGC TATTTTATCGCTAAG TERM 1627 1019629 - 1019592 - R 100 -12.2 -5.37865 | opp_overlap 1019588 1019586 1019592 CTAAGAACGAAAAAA GCGGTTGGATTTGCAA GATTTT TTACAAATTCAACCGC TTGCTATTTTATCGC TERM 1628 1019592 - 1019629 + r 95 -12.9 -3.57825 | opp_overlap 1019592, overlap 1019588 1019586 CTAAGAACGAAAAAA GCGGTTGGATTTGCAAG ATTT TTTACAAATTCAACCGC TTGCTATTTTATCGC cysS 1021030 - 1019651 - | cysteinyl-tRNA synthetase TERM 1629 1021271 - 1021252 - g 80 -5 -5.09426 | GGTAACCGCAAAAAA CTTTGAAG ATTA CTGCAAAG AAGGCTTCTATAACG ppiB 1021175 - 1021684 + | peptidyl-prolyl cis-trans isomerase B TERM 1630 1021736 - 1021704 - f 100 -14.3 -4.01078 | opp_overlap 1021704, overlap 1021693 AAAATCCATTAGAAA TTTGACCGCTTGCAC TCA ACACAAGCGGTCAAA TTTTTTATCATTCTG TERM 1631 1021704 - 1021736 + F 100 -12.2 -5.39755 | opp_overlap 1021693 1021704 AAAATCCATTAGAAA TTTGACCGCTTG CACTCAACA CAAGCGGTCAAA TTTTTTATCATTCTG TERM 1632 1021913 - 1021929 + G 78 -2.2 -5.47218 | overlap 1021911 AGGTTATCAGCAAGT CGGCAA TGACT TTCCCG TTTTTTTACATCCAA cca 1021713 - 1022951 + | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase APJL_0928 1023096 - 1023605 + | transposase and inactivated derivative TERM 1633 1023774 - 1023792 + G 71 -2.4 -5.09225 | ACGGCTATCGTCGTA TTACGTTA AAG TTACGTGA TTTTTTGGGTGCGAT TERM 1634 1024420 - 1024388 - g 100 -17.9 -4.5852 | opp_overlap 1024388 CAAGTGAAATTAAAA GGACTGAGCCCTGTA CAA TACAGAACTCAGTCC TTAAATTAAACAGTC TERM 1635 1024388 - 1024420 + G 100 -13.5 -3.17392 | opp_overlap 1024388 CAAGTGAAATTAAAA GGACTGAGCCCTGTA CAA TACAGAACTCAGTCC TTAAATTAAACAGTC APJL_0929 1023617 - 1024429 + | transposase irp 1026847 - 1024475 - | iron-regulated outer membrane protein TERM 1636 1026643 - 1026656 + g 82 -6.7 -4.77896 | CAAGCGCATTGCCCA GCGTT GCCG AACGC TTTTTAAATTCCTTA TERM 1637 1027037 - 1027048 + G 85 -7.2 -4.82863 | TTAAACTTACTCTTG CCGC AATT GCGG TTTCTTTTGTGATTA TERM 1638 1027234 - 1027204 - g 100 -11.8 -4.2828 | opp_overlap 1027213 CCTGAGCTACCAAAA CCGGTGCAACCGGC TAA ACCGGTTACTCCAG CCGAAACACCAAAAC APJL_0931 1027009 - 1028265 + | hypothetical protein TERM 1639 1028274 - 1028263 - f 71 -4.4 -4.87318 | GTGAAAACTGAAAAA TAGG CTCG CCTA GCTAAAAGGGCTGGT TERM 1640 1028277 - 1028302 + F 100 -10.5 -4.84359 | opp_overlap 1028282, overlap 1028282 ATAGGCTCGCCTAGC TAAAAGGGCTG GTAA CAGCCCTTTTC TTTTTCTAAGGATAA TERM 1641 1028297 - 1028282 - f 89 -10.4 -4.18018 | opp_overlap 1028282 1028277 CTCGCCTAGCTAAAA GGGCTG GTAA CAGCCC TTTTCTTTTTCTAAG TERM 1642 1028282 - 1028297 + F 100 -10.4 -5.35224 | opp_overlap 1028282, overlap 1028277 CTCGCCTAGCTAAAA GGGCTG GTAA CAGCCC TTTTCTTTTTCTAAG APJL_0932 1028321 - 1029736 + | hypothetical protein TERM 1643 1029727 - 1029754 + T 70 -8.7 -3.00525 | opp_overlap 1029727 1029726 TCTGATCATCGAAAG TCGTTTTTAAT CTAATA ATTAAAAACGA TATGATTTGCCCCAA TERM 1644 1029754 - 1029727 - T 73 -9.4 -2.80796 | opp_overlap 1029727, overlap 1029726 TCTGATCATCGAAAG TCGTTTTTAATC TAAT AATTAAAAACGA TATGATTTGCCCCAA TERM 1645 1029810 - 1029830 + T 78 -7.5 -4.20106 | AAAGGCTGAGCCTCG GGATTGAGC AGG GCCCAGTCC TTTTAAATCCAGTTT TERM 1646 1030063 - 1030074 + T 73 -5.8 -4.43477 | overlap 1030060 ATAATGAATAATCGG GCCA TCCG TGGC TTTTAATTGACTCAG TERM 1647 1030750 - 1030733 - T 76 -4.9 -5.06816 | opp_overlap 1030733 AGTTGCGAACAAAAA CTAAAAC TTTC GCTTTAG GTTTTTACAGATTAT APJL_0933 1030956 - 1030762 - | hypothetical protein fdx2 1031297 - 1030956 - | ferredoxin hscA 1033271 - 1031418 - | chaperone protein HscA TERM 1648 1031762 - 1031782 + g 90 -11.3 -3.64822 | opp_overlap 1031767, overlap 1031767 TAACTTCTTCGTCAG TTAAACCGT AAG ACGGTTTAA TTTGAATCGAAGCCT TERM 1649 1031767 - 1031777 + g 71 -6.8 -4.08485 | opp_overlap 1031767, overlap 1031762 TCTTCGTCAGTTAAA CCGT AAG ACGG TTTAATTTGAATCGA TERM 1650 1031896 - 1031864 - G 73 -9.1 -3.45118 | CCACTTGATAAGTAA CACGAATCGTCGCCG CAC CGGCAACCATCGGTG GAATGCCTCGTAACG TERM 1651 1033218 - 1033255 + g 73 -8.3 -3.62096 | opp_overlap 1033219, overlap 1033219 ACCGACGGCTAAACG ATGCTGATGCGGCGCAG CCGT CTGCCCCGGCTCAGCAA TTTGAAGTAATGCCA TERM 1652 1033254 - 1033219 - G 86 -11.8 -2.91695 | opp_overlap 1033219 1033218 CCGACGGCTAAACGA TGCTGATGCGGCGCAG CCGT CTGCCCCGGCTCAGCA ATTTGAAGTAATGCC TERM 1653 1033219 - 1033254 + g 83 -11.8 -2.77043 | opp_overlap 1033219, overlap 1033218 CCGACGGCTAAACGA TGCTGATGCGGCGCAG CCGT CTGCCCCGGCTCAGCA ATTTGAAGTAATGCC TERM 1654 1033263 - 1033273 + g 80 -2.6 -5.46276 | CTCAGCAATTTGAAG TAAT GCC ATTA TTTTTTATCTCTCTT APJL_0936 1034022 - 1033390 - | hypothetical protein TERM 1655 1033900 - 1033912 + g 76 -10.5 -3.04461 | opp_overlap 1033900 1033884 CTGCATTCCGACTAA CGCCG CAC CGGCG TCTTCCGGATAGCTC TERM 1656 1033912 - 1033900 - G 77 -10.5 -3.15544 | opp_overlap 1033900, overlap 1033884 CTGCATTCCGACTAA CGCCG CAC CGGCG TCTTCCGGATAGCTC APJL_0937 1034502 - 1034050 - | hypothetical protein TERM 1657 1034221 - 1034203 - G 82 -2.4 -5.68489 | GACAATAATAAAAAA CAGCAT ATTGGTA ATGCCG ATTTTAGGTGCTAAA hscB 1035071 - 1034550 - | co-chaperone HscB TERM 1658 1034652 - 1034662 + g 71 -6.8 -4.21319 | TTGTTGCCATTGTTG CGCT TCC AGCG TTTGTTGCAGTTGCT TERM 1659 1034884 - 1034904 + g 71 -6.9 -4.128 | overlap 1034888 CGTAGAATCGGATCT TTAAGCGTT TGT AACGCTGAA TTTATATCTGCCGAT iscA 1035404 - 1035081 - | iron-binding protein iscU 1035929 - 1035546 - | scaffold protein TERM 1660 1035647 - 1035660 + g 70 -3.7 -4.8622 | GTAATTCCAATTCTT CTGCG ATGT CGCTG TTTTTAATTGCGCCC TERM 1661 1035746 - 1035765 + g 74 -10 -3.10796 | opp_overlap 1035740 TTGCAGAACCGCAAC CGTACGCT TTAA AGCGTGCG TCTTCAATAATACCC TERM 1662 1035956 - 1035974 + r 87 -11.8 -3.54935 | opp_overlap 1035952 TCTGTTAAATATTCC CCCTCTTT AGT AAAGAGGG TTTAGGGGAGATTTG iscS 1037289 - 1036063 - | cysteine desulfurase APJL_0942 1037796 - 1037344 - | putative HTH-type transcriptional regulator TERM 1663 1037876 - 1037858 - H 73 -9.6 -2.89742 | opp_overlap 1037856 GTGAATTTTGATATA CCTGACTG TTA CAGTCAAG AATTTTACACTTATC TERM 1664 1038239 - 1038222 - H 76 -4.9 -4.99861 | overlap 1038213 1038224 TAGCAATCATAAAAA TATGAAC GACA GTTCACA AAAATGGCCTTTTAT ompP1 1038286 - 1039677 + | outer membrane protein P1 TERM 1665 1039715 - 1039737 + F 100 -12.1 -5.41941 | opp_overlap 1039715 TACGAAGATGCCAAA GGCGTGTAA ACTGA TTACACGCC TTTTTATTTACTTTA TERM 1666 1039737 - 1039715 - f 93 -12.1 -3.67517 | opp_overlap 1039715 TACGAAGATGCCAAA GGCGTGTAA ACTGA TTACACGCC TTTTTATTTACTTTA ogt 1039763 - 1040326 + | methylated-DNA--protein-cysteine S-methyltransferase TERM 1667 1040339 - 1040312 - T 88 -4.8 -5.56264 | opp_overlap 1040312 1040313, overlap 1040313 CCGAAACATAAAAAA TGGGATAAAGCC TAAA GACGTTATCCCC TTTCGATTAGTAATT TERM 1668 1040338 - 1040313 - T 77 -8.3 -3.92132 | opp_overlap 1040313 1040312, overlap 1040312 CGAAACATAAAAAAT GGGATAAAGCC TAAA GACGTTATCCC CTTTCGATTAGTAAT arcB 1042196 - 1040346 - | sensor histidine kinase TERM 1669 1042245 - 1042217 - R 100 -8.3 -5.07652 | opp_overlap 1042212 1042217 CCCCTTAAAAGAAAA TCCTTTCTATCGT TTA AAAATAGAAAGGA TTTATTATAGCTTAA APJL_0946 1043165 - 1042302 - | putative integral membrane protein TERM 1670 1042360 - 1042372 + g 89 -3.5 -5.63517 | AAGACACCTAAGTAG TTAAT TTT ATTAA TTTTTTCTTTAAAAA TERM 1671 1043274 - 1043227 - R 100 -15 -3.08912 | opp_overlap 1043228 1043231, overlap 1043231 1043251 TATGAGATAGATAGA TCAAGCGGTCGGATCTGTGCAA AATT TTGCAAAAATACGACCGCTTGT TATGCTCTATTTACG TERM 1672 1043228 - 1043273 + r 100 -16.3 -3.54662 | opp_overlap 1043227 1043231 1043251, overlap 1043231 ATGAGATAGATAGAT CAAGCGGTCGGATCTGTGCAA AATT TTGCAAAAATACGACCGCTTG TTATGCTCTATTTAC TERM 1673 1043231 - 1043270 + r 93 -12.2 -3.88777 | opp_overlap 1043231 1043227 1043251, overlap 1043228 AGATAGATAGATCAA GCGGTCGGATCTGTGCAA AATT TTGCAAAAATACGACCGC TTGTTATGCTCTATT TERM 1674 1043270 - 1043231 - R 100 -14.4 -3.37057 | opp_overlap 1043228 1043231, overlap 1043227 1043251 AGATAGATAGATCAA GCGGTCGGATCTGTGCAA AATT TTGCAAAAATACGACCGC TTGTTATGCTCTATT APJL_0947 1043823 - 1043281 - | hypothetical protein bioD2 1044457 - 1043813 - | dithiobiotin synthetase bioC 1045227 - 1044457 - | biotin synthesis protein APJL_0950 1045874 - 1045215 - | hypothetical protein TERM 1675 1045280 - 1045296 + g 100 -8.7 -5.0916 | opp_overlap 1045280, overlap 1045268 GCTCACCTTTAGATA GGTGTGT CAT ACGCACC TTTTTATCTTGCCAA bioF 1047047 - 1045884 - | 8-amino-7-oxononanoate synthase TERM 1676 1046205 - 1046190 - G 76 -2.5 -5.27335 | CCGCTCAAATAAAAA TGCCG TCCACG CGACA TTTAGTGGCGGTAAT TERM 1677 1046350 - 1046338 - G 87 -6.3 -5.1675 | GTACCGACTAAAAAA TCGAT CTC ATCGA TACAGCCTAATACTT bioA 1048372 - 1047074 - | adenosylmethionine--8-amino-7-oxononanoate transaminase TERM 1678 1048505 - 1048521 + G 83 -10.9 -3.54459 | opp_overlap 1048500 GAAGAAATTACCGAG TCATCCG CAG CGGATGA TTTAAAAACGATTCA APJL_0953 1048463 - 1049407 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase TERM 1679 1049466 - 1049418 - T 100 -11.9 -5.15381 | opp_overlap 1049413 1049418 1049436 AATAGACCTAAAAAA GCGGTCATATTTCTTCCTTTTTT ACA AAATTTTGAAGAAATATGACCGC TTAACTTTATACGGA TERM 1680 1049418 - 1049466 + T 89 -11.9 -3.32997 | opp_overlap 1049418, overlap 1049413 1049436 AATAGACCTAAAAAA GCGGTCATATTTCTTCCTTTTTT ACA AAATTTTGAAGAAATATGACCGC TTAACTTTATACGGA greA2 1049965 - 1049489 - | transcription elongation factor GreA TERM 1681 1049813 - 1049831 + g 81 -5.2 -5.10933 | overlap 1049808 1049816 1049827 ACCTTGCTGTTCACG TGCCGCGT GGT ATTCGGCA TTTTCTTTTAAATCG TERM 1682 1050223 - 1050235 + G 73 -2.7 -5.0916 | CAAATTATTACACAA TATCA AAG TGATG TTTTTATGTTGCCGG TERM 1683 1050378 - 1050364 - g 74 -4.2 -4.91987 | AACGGAATAATAAAA GGTGAT TTA ATCGCC AAATTCACAGGTGAT dacB 1050049 - 1051491 + | D-alanyl-D-alanine carboxypeptidase/endopeptidase TERM 1684 1051497 - 1051527 + T 82 -11.3 -3.36968 | opp_overlap 1051503, overlap 1051498 1051503 TAACGAATAATTTCC CTAAAAGGCACTC CTGAC GAGTGCCTTTTAC TTATGCAATTAAATC TERM 1685 1051498 - 1051526 + T 95 -14.8 -2.6186 | opp_overlap 1051503, overlap 1051497 1051503 AACGAATAATTTCCC TAAAAGGCACTC CTGAC GAGTGCCTTTTA CTTATGCAATTAAAT TERM 1686 1051503 - 1051521 + T 95 -10.3 -4.49389 | opp_overlap 1051503, overlap 1051498 1051497 ATAATTTCCCTAAAA GGCACTC CTGAC GAGTGCC TTTTACTTATGCAAT TERM 1687 1051521 - 1051503 - T 89 -10.3 -4.10007 | opp_overlap 1051503 1051498 1051497 ATAATTTCCCTAAAA GGCACTC CTGAC GAGTGCC TTTTACTTATGCAAT APJL_0956 1051797 - 1051528 - | acetyltransferase TERM 1688 1051932 - 1051952 + r 100 -12.7 -4.65263 | CAGTAAAATTTTTGA TGCCCTTAA TCG TTAAGGGCA TTTATTTTGGCAAAT APJL_0957 1053237 - 1052116 - | hypothetical protein TERM 1689 1053315 - 1053294 - R 75 -8.7 -3.48985 | overlap 1053292 AGACATAAAAAATCA CCCACCTGA ATTT TCAGGTCGG CTCAAAGCGTTTTGC TERM 1690 1053573 - 1053554 - R 100 -10.8 -5.63517 | opp_overlap 1053530 1053554 1053558 CTGTCAAATAAAAAA GCAACTCA TTGC TGAGTTGC TGTGAGAAAGCTAAT TERM 1691 1053637 - 1053608 - R 85 -9.5 -4.1523 | gap 1, overlap 1053610 1053631 TCGAATTATAAACAA TA-GGAGTTCATCT AAA AGACGAACTCCATA AATGGGGATAATTAT TERM 1692 1053634 - 1053610 - R 100 -13.7 -3.66489 | overlap 1053608 1053631 GAATTATAAACAATA GGAGTTCATCT AAA AGACGAACTCC ATAAATGGGGATAAT APJL_0958 1053996 - 1053649 - | hypothetical protein TERM 1693 1055046 - 1055028 - g 78 -7.4 -4.48333 | ACACATCAAGGAAAA GTGTGCTG TGG CAGAACAC CGATGGCAACATTAC APJL_0959 1054068 - 1055108 + | hypothetical protein APJL_0960 1056181 - 1055147 - | hypothetical protein TERM 1694 1055281 - 1055260 - G 71 -4.6 -4.59773 | opp_overlap 1055246 1055260 1055257 TTTCATTTTCAAAAA GAATTAAA TAATTG TTTAATTC TTCTTTATTTAGCTC APJL_0961 1056737 - 1056174 - | Zn peptidase TERM 1695 1056763 - 1056783 + r 93 -12.7 -3.46285 | opp_overlap 1056763, overlap 1056758 TAATATAGTCCACAA CCACGTATT AGG AATACGTGG TTCATATTTAAAATC TERM 1696 1056783 - 1056763 - R 93 -12.7 -3.36648 | opp_overlap 1056763 1056758 TAATATAGTCCACAA CCACGTATT AGG AATACGTGG TTCATATTTAAAATC APJL_0962 1057199 - 1056891 - | hypothetical protein TERM 1697 1057390 - 1057356 - g 72 -7.9 -3.82261 | opp_overlap 1057355, overlap 1057352 CTGCAAGAAAATTAA GTCCGCTTAAGATAG CTCGT CTATCTGATGCAGAC GCATTTTCTTTATTG APJL_0963 1057262 - 1058347 + | putative transposase APJL_0964 1058347 - 1058781 + | ATPase involved in DNA repair APJL_0965 1059171 - 1058782 - | hypothetical protein TERM 1698 1059276 - 1059235 - R 79 -3.1 -5.5353 | gap 1 GAGAGCAAGAAAAAA TGTAGCAGAAACACTAA-AT TAA ATCTTTGTGCAACTGCTACA TAATACCGGAAAATT apxIIB 1059785 - 1059213 - | leukotoxin translocation ATP-binding protein TERM 1699 1059838 - 1059805 - R 100 -9.1 -5.40072 | opp_overlap 1059805 1059826 TCTCCTTTAAAAAAA TAACAATCCTATAAT TTAC ACCATAGGATTGCTA TGATTTGAATATTAA apxIIA 1062720 - 1059850 - | hemolysin A TERM 1700 1061231 - 1061243 + g 74 -6.3 -4.49337 | GCATCCACATAAGCT TTTCC ACT GGAAA TTTTATCCGTTCTAC apxIIC 1063241 - 1062759 - | hemolysin-activating lysine-acyltransferase HlyC APJL_0969 1065286 - 1063418 - | hypothetical protein TERM 1701 1063460 - 1063478 + g 86 -6 -5.30348 | TTGTACCAACGTTCT GTAATGGT TAA GCCATTGC TTTTTGTTGTTGGGT TERM 1702 1063891 - 1063903 + g 82 -3.4 -5.46706 | opp_overlap 1063891 TCACCGAAATAAAAT CAAC AAGCG GTTG TTTTTGTTTTGAAAT TERM 1703 1065280 - 1065270 - G 73 -5.4 -4.64676 | GCACCTTCAAGAAAA TCAG GTG CTGA AGTCAAAATAACGAG APJL_0970 1065807 - 1065316 - | putative metalloprotease TERM 1704 1066055 - 1066096 + H 100 -14.6 -4.04579 | gap 1, opp_overlap 1066057 1066058 1066061, overlap 1066046 1066058 AGTTGATTTTAGGAA AATTTATGTAGGGGCGGGG TTTAT CCCCGCCCCTACG-AAATA TTTAATGTTTGTGCA TERM 1705 1066094 - 1066057 - H 100 -15 -4.26903 | gap 1, opp_overlap 1066055 1066058, overlap 1066058 1066061 TTGATTTTAGGAAAA TTTATGTAGGGGCGGGG TTTAT CCCCGCCCCTACG-AAA TATTTAATGTTTGTG TERM 1706 1066058 - 1066094 + H 100 -18.8 -3.60737 | opp_overlap 1066057 1066058 1066061, overlap 1066055 TGATTTTAGGAAAAT TTATGTAGGGGCGGGG TTTAT CCCCGCCCCTACGAAA TATTTAATGTTTGTG TERM 1707 1066094 - 1066058 - H 100 -16.6 -3.1582 | opp_overlap 1066055 1066058, overlap 1066057 1066061 TGATTTTAGGAAAAT TTATGTAGGGGCGGGG TTTAT CCCCGCCCCTACGAAA TATTTAATGTTTGTG TERM 1708 1066091 - 1066061 - H 100 -18.3 -2.77781 | opp_overlap 1066058 1066055, overlap 1066057 1066058 TTTTAGGAAAATTTA TGTAGGGGCGGGG TTTAT CCCCGCCCCTACG AAATATTTAATGTTT TERM 1709 1066178 - 1066167 - H 81 -4.4 -5.26875 | opp_overlap 1066167 TTGCCAATGAAAAAA GCAA ACGT TTGC GTTATACTAGAAAAG purH 1066230 - 1067819 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1710 1068906 - 1068888 - g 78 -7.4 -4.48333 | ACACATCAAGGAAAA GTGTGCTG TGG CAGAACAC CGATGGCAACATTAC APJL_0972 1067928 - 1068968 + | hypothetical protein TERM 1711 1069141 - 1069173 + T 76 -10.2 -3.07443 | gap 1, opp_overlap 1069136 1069150, overlap 1069150 GTTTAATGTAGCCTT TATAAAAAAGCGAGA TTTC TCTCGCTTTTTT-TA TTCAATCGCATGTAA TERM 1712 1069165 - 1069150 - T 100 -9 -5.24531 | opp_overlap 1069141 1069150, overlap 1069136 AGCCTTTATAAAAAA GCGAGA TTTC TCTCGC TTTTTTTATTCAATC TERM 1713 1069150 - 1069165 + T 100 -9 -5.8187 | opp_overlap 1069136 1069150, overlap 1069141 AGCCTTTATAAAAAA GCGAGA TTTC TCTCGC TTTTTTTATTCAATC APJL_0973 1069573 - 1069217 - | hypothetical protein TERM 1714 1069484 - 1069466 - G 71 -4.6 -4.63218 | TGCTGGTGAATAAAA TTGCTTAC CTG GTAACCAA ACATAATAAGCTTTC APJL_0974 1069892 - 1069587 - | hypothetical protein APJL_0975 1070148 - 1069984 - | hypothetical protein APJL_0976 1070625 - 1070293 - | hypothetical protein APJL_0977 1070834 - 1070622 - | large exoprotein involved in heme utilizationor adhesion APJL_0978 1071303 - 1071004 - | hypothetical protein APJL_0979 1079093 - 1071300 - | large exoprotein involved in heme utilizationor adhesion TERM 1715 1072387 - 1072399 + g 72 -7.7 -3.81137 | AGTACCTTTTGTGCC TCCGA CTC TCGGA TTTGAATATTTGCCG TERM 1716 1072732 - 1072742 + g 79 -6.8 -4.74504 | overlap 1072736 AATCGGTTATATCCT GCTG CTT CAGC TTTTTCAGTTGAAGT TERM 1717 1075036 - 1075046 + g 73 -2.6 -5.10077 | opp_overlap 1075043 AAGCCTATGCCGACT TTTA AAT TAAA TTTTTTAGCGTATTT TERM 1718 1076749 - 1076731 - G 71 -4.6 -4.68724 | TTATTTAACACAAAA CTGTCTTT CAA AAAGATAG AAAGATCTCCGGCCG TERM 1719 1077743 - 1077755 + g 75 -9.1 -3.71924 | CTTGTGCCGAGAGCC GGCGA GTT TCGCC TTGTTGCGTACTTTG TERM 1720 1078989 - 1078941 - G 100 -11.1 -4.32131 | opp_overlap 1078946, overlap 1078946 GCAAAATAAACTAAA GGTAAGCGGTCTGATTTTGCAAA TTT TCTGCGAAATCACACCGCTTGTC ATACCCGCTTCATTT TERM 1721 1078984 - 1078946 - G 100 -14 -3.36188 | opp_overlap 1078946, overlap 1078941 ATAAACTAAAGGTAA GCGGTCTGATTTTGCAAA TTT TCTGCGAAATCACACCGC TTGTCATACCCGCTT TERM 1722 1078946 - 1078984 + g 100 -14 -3.40899 | opp_overlap 1078946 1078941 ATAAACTAAAGGTAA GCGGTCTGATTTTGCAAA TTT TCTGCGAAATCACACCGC TTGTCATACCCGCTT APJL_0980 1080913 - 1079141 - | hemolysin activation/secretion protein TERM 1723 1080373 - 1080363 - G 71 -6.8 -4.17089 | TGTAAAGGGGTAAAA CGAG GTA CTCG ACCGTTATCCATCAC TERM 1724 1081052 - 1081022 - R 100 -9.2 -5.24647 | gap 1, opp_overlap 1081022 ATATATAAAATAAAA GAGTCGATCACTA TCATTC TAG-GATCGACTC TTAATACATAAAATA TERM 1725 1081022 - 1081052 + r 75 -9.2 -3.18582 | gap 1, opp_overlap 1081022 ATATATAAAATAAAA GAGTCGATCACTA TCATTC TAG-GATCGACTC TTAATACATAAAATA imp 1083432 - 1081096 - | organic solvent tolerance protein TERM 1726 1082956 - 1082973 + g 82 -8.5 -4.3953 | overlap 1082945 ACAGGCGGTAAAGGT CGCATTT TTTA AAATGCG TTTATTGTGATTAAA hemN 1084856 - 1083489 - | coproporphyrinogen III oxidase TERM 1727 1084532 - 1084516 - G 83 -9.3 -3.96216 | GCTTCATCCAAATAA GTCGGCG TAC CGCCGCC CCAGTGAATTTGAGT APJL_0983 1085353 - 1084886 - | putative coproporphyrinogen III oxidase TERM 1728 1085163 - 1085131 - G 77 -10.7 -2.89569 | opp_overlap 1085131 1085132, overlap 1085128 1085124 GTTTTAAACGAAGTA CGCCTTCCGAAAAAT CAC ATTGTTCGGAAAGCA TTGCTCTTGTAATGA TERM 1729 1085132 - 1085162 + g 71 -9.8 -2.6544 | opp_overlap 1085131 1085128 1085124, overlap 1085131 TTTTAAACGAAGTAC GCCTTCCGAAAAAT CAC ATTGTTCGGAAAGC ATTGCTCTTGTAATG APJL_0984 1085947 - 1085369 - | hypothetical protein TERM 1730 1085486 - 1085497 + g 74 -4.4 -4.93696 | opp_overlap 1085486, overlap 1085480 1085476 GATACGATCCAAACA TTCG TCTA CGAA TTTTTGATCTTTCGC TERM 1731 1086080 - 1086027 - R 100 -11.9 -4.70353 | opp_overlap 1086043 1086049 1086075, overlap 1086071 GAGAAGAAATGAAAA TAGCGGTCGGATTCATTGAGAATTT TACA AAAATCTCGTTAAATTCGACCGCTA TCGATGATGACGGAT APJL_0985 1087754 - 1086096 - | hypothetical protein TERM 1732 1087845 - 1087832 - H 73 -6.7 -4.21631 | AACTGATTCAAGAAA TTCGC AATT GCGAA GCGGATAATATGATC TERM 1733 1087880 - 1087892 + H 76 -4.9 -4.98255 | TCAAAAAATTTTTAA CTTAT ATG ATAAG TTTTTCTAATTCCAA TERM 1734 1088255 - 1088270 + G 70 -2.5 -4.91712 | overlap 1088253 CCTTCTTCTCATCCG TCGGT TTATCC GCCGA TTTTTCTCGCTTAAA gltS 1088017 - 1089234 + | sodium/glutamate symporter TERM 1735 1089284 - 1089252 - T 100 -12.7 -4.78326 | opp_overlap 1089254 1089257, overlap 1089257 GTTTAAACAAATAAA GCAAAGGGGCAACCG TTA CGGTTGCCCCTTCTT TGTTTTATTACTTAA TERM 1736 1089254 - 1089282 + T 100 -17.5 -4.91657 | opp_overlap 1089252 1089257, overlap 1089257 TTAAACAAATAAAGC AAAGGGGCAACCG TTA CGGTTGCCCCTTC TTTGTTTTATTACTT TERM 1737 1089257 - 1089279 + T 100 -19.2 -4.51933 | opp_overlap 1089257 1089252, overlap 1089254 AACAAATAAAGCAAA GGGGCAACCG TTA CGGTTGCCCC TTCTTTGTTTTATTA TERM 1738 1089279 - 1089257 - T 100 -19.2 -4.30977 | opp_overlap 1089254 1089257, overlap 1089252 AACAAATAAAGCAAA GGGGCAACCG TTA CGGTTGCCCC TTCTTTGTTTTATTA APJL_0987 1089681 - 1089304 - | hypothetical protein TERM 1739 1089730 - 1089767 + r 87 -11.5 -3.60348 | opp_overlap 1089730 TATAGCGGAAAACAA GCGGTTAAATTGACAAA ATTT TTTGCAAATTTAACCGC TTCTCTGATCTTAGC TERM 1740 1089767 - 1089730 - R 100 -13.7 -4.20817 | opp_overlap 1089730 TATAGCGGAAAACAA GCGGTTAAATTGACAAA ATTT TTTGCAAATTTAACCGC TTCTCTGATCTTAGC glnE 1092657 - 1089778 - | glutamate ammonia ligase adenylyltransferase TERM 1741 1092688 - 1092715 + r 79 -8.4 -4.08767 | opp_overlap 1092690, overlap 1092690 AAATCGGACGAGAAA AAGGCACAAACG GAAT CGCTTGTGCCTG TTTTAACAAAATAAG TERM 1742 1092690 - 1092713 + r 84 -11 -3.6422 | opp_overlap 1092690, overlap 1092688 ATCGGACGAGAAAAA GGCACAAACG GAAT CGCTTGTGCC TGTTTTAACAAAATA TERM 1743 1092713 - 1092690 - R 100 -13.2 -4.91511 | opp_overlap 1092690 1092688 ATCGGACGAGAAAAA GGCACAAACG GAAT CGCTTGTGCC TGTTTTAACAAAATA APJL_0989 1093013 - 1092732 - | YciI-like protein APJL_0990 1093515 - 1093024 - | putative acyl CoA thioester hydrolase ispZ 1094053 - 1093502 - | intracellular septation protein A APJL_0992 1094792 - 1094055 - | hypothetical protein APJL_0993 1094951 - 1095385 + | membrane protein APJL_0994 1095398 - 1095556 + | hypothetical protein TERM 1744 1095644 - 1095662 + G 75 -8.2 -3.74158 | GTTTACGCCGTAATG TCGGTAAT GCG ATTGCCGA TTTCAATATGATTGA TERM 1745 1095823 - 1095811 - g 74 -6.2 -4.50988 | TTAGACCAAAAACAA CCGG GCTTT CCGG AACACATTTTGCCTG APJL_0995 1095553 - 1096509 + | hypothetical protein TERM 1746 1096538 - 1096517 - f 91 -11.7 -3.72051 | opp_overlap 1096517 TTCAATAATCCTAAA GAGCAAACT TTTA AGTTTGCTC TTTTTTCTATAACTT TERM 1747 1096517 - 1096538 + F 100 -11.7 -5.38951 | opp_overlap 1096517 TTCAATAATCCTAAA GAGCAAACT TTTA AGTTTGCTC TTTTTTCTATAACTT TERM 1748 1096944 - 1096931 - g 70 -9.5 -2.84841 | opp_overlap 1096929, overlap 1096928 AACCGCAATGAACTA CGCCG TACT CGGCG CATTTGCCGTAGCCT TERM 1749 1097350 - 1097364 + G 74 -10 -3.16093 | overlap 1097348 CTAAAGCGATGGCGG TACCGG TTG CCGGTA TGATTTTAGGTTTAC TERM 1750 1098020 - 1098032 + G 70 -7.7 -3.71321 | CCATATTTGGGATTC TGTCG TAC CGACA TTCTTACACTTTAAT APJL_0996 1096716 - 1098092 + | permease xthA 1098144 - 1098986 + | exonuclease III TERM 1751 1099046 - 1098991 - T 89 -10.3 -4.01603 | gap 2, opp_overlap 1098991 1098990 1098994, overlap 1098994 TATTCAAATAGCAAA CAAGCGGTCAAATTTAGCAAAAAATTT ACAA AAAATTCTT--TAAATTTGACCGCTTG TCTTTAATCTTTCGG TERM 1752 1098991 - 1099046 + T 78 -9.4 -3.5913 | gap 1, opp_overlap 1098991 1098994, overlap 1098990 1098994 TATTCAAATAGCAAA CAAGCGGTCAAATTTAGCAAAAAATTT ACA AAAAATTCT-TTAAATTTGACCGCTTG TCTTTAATCTTTCGG lysR1 1099934 - 1099050 - | DNA-binding transcriptional regulator IlvY TERM 1753 1099451 - 1099439 - G 74 -6.3 -4.56133 | overlap 1099447 GTGCAATAATCAAAA GATGA ATA TCATC AATATAATGAAACAC APJL_0999 1100975 - 1099935 - | putative D-glycero-D-manno-heptosyltransferase lbgA 1101660 - 1100977 - | lipooligosaccharide galactosyltransferase I TERM 1754 1101249 - 1101261 + g 76 -7.7 -4.21194 | overlap 1101235 GTGGACGTGTTATCG GCCAA TAT TTGGC TTTTCCGTGGTCAAA TERM 1755 1102610 - 1102632 + G 83 -9.2 -3.91959 | GCGGTGGTGTTCACA TGGCTTGC GCTTATG GCAAGCCA TTATTATCATTCTAT APJL_1001 1101769 - 1102830 + | hypothetical protein TERM 1756 1102879 - 1102848 - T 100 -14.6 -4.24948 | opp_overlap 1102851 1102856, overlap 1102856 CCAGGACATTTAAAA CAACAAAACCCCGC ATTG GCGGGGTTTTATTA ATAATTCGAAAATTA TERM 1757 1102851 - 1102876 + T 87 -11.9 -3.27298 | opp_overlap 1102848 1102856, overlap 1102856 GGACATTTAAAACAA CAAAACCCCGC ATTG GCGGGGTTTTA TTAATAATTCGAAAA TERM 1758 1102871 - 1102856 - T 100 -11.8 -5.093 | opp_overlap 1102851 1102856, overlap 1102848 TTTAAAACAACAAAA CCCCGC ATTG GCGGGG TTTTATTAATAATTC TERM 1759 1102856 - 1102871 + T 100 -11.8 -4.75219 | opp_overlap 1102856 1102848, overlap 1102851 TTTAAAACAACAAAA CCCCGC ATTG GCGGGG TTTTATTAATAATTC rpL31_2 1103104 - 1102892 - | 50S ribosomal protein L31 TERM 1760 1103357 - 1103374 + H 71 -4.2 -4.87893 | ACTTTCTCATCTTTT TTGTGA AGAAGA TCACAA TTTTTACTTGAGATT TERM 1761 1103507 - 1103521 + G 77 -8.6 -3.9534 | opp_overlap 1103504 GAACGTAAAGTATTA GCGAAT GCA ATTCGC TTTCTAAGTATGGAT TERM 1762 1103657 - 1103624 - g 76 -8.1 -4.09685 | opp_overlap 1103646 1103649 CGCGATTTTTTAAAA CACAATCCGACCAAT CCTA AGTGGGCGGATCGCG ACCGTTTCGTACTTT tktA 1103486 - 1105492 + | transketolase TERM 1763 1105517 - 1105534 + T 100 -11.3 -5.2197 | opp_overlap 1105517 GACATTAAAGACAAA GGCGAGA AGAT TCTCGCC TTTTTAATTTTTGTA TERM 1764 1105534 - 1105517 - T 95 -11.3 -4.3851 | opp_overlap 1105517 GACATTAAAGACAAA GGCGAGA AGAT TCTCGCC TTTTTAATTTTTGTA TERM 1765 1105576 - 1105616 + T 72 -9.4 -2.6732 | gap 1, opp_overlap 1105582 1105589, overlap 1105582 1105589 AAATCAGACCTCTTA GTAAAACAAAAAAGCTATC TTTC GATAGCTTTTTT-TGTTAC ATATTTAGATTAACC TERM 1766 1105582 - 1105612 + T 75 -9.3 -3.25137 | gap 1, opp_overlap 1105582 1105589, overlap 1105576 1105589 GACCTCTTAGTAAAA CAAAAAA-GCTATC TTTC GATAGCTTTTTTTG TTACATATTTAGATT TERM 1767 1105611 - 1105582 - T 86 -9.5 -4.2558 | opp_overlap 1105582 1105576 1105589, overlap 1105589 GACCTCTTAGTAAAA CAAAAAAGCTATC TTTC GATAGCTTTTTTT GTTACATATTTAGAT TERM 1768 1105589 - 1105604 + T 100 -7.6 -5.8187 | opp_overlap 1105589 1105582, overlap 1105582 1105576 TAGTAAAACAAAAAA GCTATC TTTC GATAGC TTTTTTTGTTACATA TERM 1769 1105604 - 1105589 - T 100 -7.6 -5.83211 | opp_overlap 1105582 1105576 1105589, overlap 1105582 TAGTAAAACAAAAAA GCTATC TTTC GATAGC TTTTTTTGTTACATA htpG 1107503 - 1105626 - | heat shock protein 90 TERM 1770 1107067 - 1107079 + g 72 -6.2 -4.24606 | opp_overlap 1107050 ACGGCTTGTGTTTCG CCCG CCGCA CGGG TTTTCACTGTCACTT TERM 1771 1107549 - 1107529 - H 74 -2.5 -5.31456 | overlap 1107532 TTAATTTACAAAAAA TAAGCGG AATTTCA CCGCTTG CAAATGTGTTAGTAA TERM 1772 1107546 - 1107532 - H 71 -4.2 -4.73105 | overlap 1107529 ATTTACAAAAAATAA GCGG AATTTCA CCGC TTGCAAATGTGTTAG TERM 1773 1108615 - 1108601 - g 70 -2.9 -5.00884 | ATCTGGTCGAAAAAA GATTA TCCGT TAATC GAAGTGGGCGTGATG katA 1107731 - 1109257 + | catalase APJL_1006 1109424 - 1109603 + | transposase and inactivated derivative TERM 1774 1109920 - 1109952 + G 100 -13.5 -3.17392 | opp_overlap 1109920 CAAGTGAAATTAAAA GGACTGAGCCCTGTA CAA TACAGAACTCAGTCC TTAAATTAAACAGTC TERM 1775 1109952 - 1109920 - g 100 -17.9 -4.5852 | opp_overlap 1109920 CAAGTGAAATTAAAA GGACTGAGCCCTGTA CAA TACAGAACTCAGTCC TTAAATTAAACAGTC APJL_1007 1109623 - 1109961 + | transposase APJL_1008 1110074 - 1111153 + | phosphohydrolase nrdA 1111367 - 1113637 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1776 1113718 - 1113706 - f 71 -9.1 -3.11291 | CGGAGAATTTTAACA GCCAC AGC GTGGC TCACTCAATCGAAGG TERM 1777 1113770 - 1113747 - f 70 -8.1 -3.44051 | GGCTGATGATCATAA CCACGTACG GCTTGT CGTGCGTGG GCTACAAGCGGTTGA TERM 1778 1113888 - 1113910 + F 78 -10.5 -3.02371 | overlap 1113885 CGAAGAAAAGTCTGT CCCTCTCCC ACAAG GGGCGAGGG TAATTATTTAAAAAG nrdB 1113934 - 1115064 + | ribonucleotide-diphosphate reductase subunit beta TERM 1779 1115127 - 1115072 - f 95 -7.8 -5.29846 | gap 1, opp_overlap 1115075, overlap 1115066 AACTTTAAAGAAAAA CAAGCGGTCG-CTTTTCCATTATTTTT TGC AAAAAAGAGGGAAAATTCGACCGCTTA CTTAAATCGAAATCC TERM 1780 1115075 - 1115124 + F 76 -9.5 -3.37344 | gap 1, opp_overlap 1115066 1115072 TTTAAAGAAAAACAA GCGGTCG-CTTTTCCATTATTTTT TGC AAAAAAGAGGGAAAATTCGACCGC TTACTTAAATCGAAA galT 1115326 - 1116375 + | galactose-1-phosphate uridylyltransferase galK 1116403 - 1117557 + | galactokinase TERM 1781 1117568 - 1117600 + F 100 -14.4 -3.53761 | gap 1, opp_overlap 1117575, overlap 1117571 1117575 1117596 TTTAATCGTTCATCT GC-AGAAATCACGGA AATT TCCGTGATTTCTTGC TTTCGGAGCAAGTTA TERM 1782 1117571 - 1117596 + F 100 -14.9 -3.51232 | opp_overlap 1117575, overlap 1117568 1117575 AATCGTTCATCTGCA GAAATCACGGA AATT TCCGTGATTTC TTGCTTTCGGAGCAA TERM 1783 1117575 - 1117592 + F 91 -9.9 -4.39696 | opp_overlap 1117575, overlap 1117571 1117568 GTTCATCTGCAGAAA TCACGGA AATT TCCGTGA TTTCTTGCTTTCGGA TERM 1784 1117592 - 1117575 - f 85 -9.9 -3.87815 | opp_overlap 1117575 1117571 1117568 GTTCATCTGCAGAAA TCACGGA AATT TCCGTGA TTTCTTGCTTTCGGA galM 1117615 - 1118583 + | aldose 1-epimerase TERM 1785 1118714 - 1118702 - g 83 -9.1 -4.08823 | ATCAACAGAATGAAA CCGCT TTA AGCGG TAAGCGCGAACAATC TERM 1786 1119909 - 1119895 - g 73 -3.5 -5.00616 | opp_overlap 1119881 CCGCTGTTCAAAAAA GCGAT TTTAG ACCGC CAACAAGCCAATGTG lacZ 1118608 - 1121628 + | beta-galactosidase/beta-glucuronidase TERM 1787 1121737 - 1121700 - T 90 -10.7 -4.3467 | opp_overlap 1121705, overlap 1121705 ATTCTTACACTAAAA TCAAATCGGCACAGTTC AAAA AAACTGTGCCGATTTCT TTCGTATGTTATAAA TERM 1788 1121705 - 1121732 + T 100 -14.3 -4.56113 | opp_overlap 1121700 1121705 TACACTAAAATCAAA TCGGCACAGTT CAAAAA AACTGTGCCGA TTTCTTTCGTATGTT TERM 1789 1121732 - 1121705 - T 100 -15 -4.25388 | opp_overlap 1121705, overlap 1121700 TACACTAAAATCAAA TCGGCACAGTTC AAAA AAACTGTGCCGA TTTCTTTCGTATGTT TERM 1790 1124332 - 1124297 - T 76 -3.3 -5.27779 | gap 2, opp_overlap 1124326, overlap 1124298 1124299 TCTAACACTAAAAAA CCGTCATCCGCAGCGAG CCAG CCCGTTGCGG-T-ACGA ATACCTTTTCCTTCA APJL_1017 1126810 - 1126340 - | hypothetical protein TERM 1791 1126922 - 1126965 + r 100 -15.6 -4.55544 | opp_overlap 1126925, overlap 1126925 AATCGTACTAATAAA AAAGCGGTAGAATTTGCA ACTTTTTC TGCAAATTCTACCGCTTG TTTTCCTTCTGTGTT TERM 1792 1126962 - 1126925 - R 100 -18 -5.5112 | opp_overlap 1126922 1126925 CGTACTAATAAAAAA GCGGTAGAATTTGCAA CTTTTT CTGCAAATTCTACCGC TTGTTTTCCTTCTGT TERM 1793 1126925 - 1126962 + r 100 -17.3 -4.36586 | opp_overlap 1126925, overlap 1126922 CGTACTAATAAAAAA GCGGTAGAATTTGCA ACTTTTTC TGCAAATTCTACCGC TTGTTTTCCTTCTGT mrp 1128104 - 1127007 - | putative ATPase APJL_1019 1129658 - 1128108 - | putative oligopeptide transporter,periplasmic-binding protein TERM 1794 1129279 - 1129289 + g 73 -8.2 -3.66178 | AACACGATATCTTGT GCGG TAA CCGC TTTACCGTTAGACCA APJL_1020 1130326 - 1129673 - | hypothetical protein TERM 1795 1130422 - 1130397 - R 100 -7.6 -5.60556 | opp_overlap 1130397 AAGACAAAACAAAAA CGCCTAGAAC ATATCA GTTTTAGGCG TTTTTAAATATCAAT TERM 1796 1130397 - 1130422 + r 91 -9.8 -4.71061 | opp_overlap 1130397 AAGACAAAACAAAAA CGCCTAGAAC ATATCA GTTTTAGGCG TTTTTAAATATCAAT ppiD 1132325 - 1130448 - | peptidyl-prolyl cis-trans isomerase D TERM 1797 1131507 - 1131524 + g 84 -9.9 -3.75169 | opp_overlap 1131503 CGCTAACTGAATATG GGCGAAA CGAG TTTCGCC TTTAGTCGCGTAATC nhaP 1132554 - 1133867 + | Na+/H+ antiporter rpsO 1133989 - 1134258 + | 30S ribosomal protein S15 TERM 1798 1134281 - 1134298 + F 100 -11.3 -5.66684 | opp_overlap 1134280 1134278 1134281 TTGAAATCAGAAGAG CCGAGCT ATTT AGCTCGG TTTTTTTATAAATTC TERM 1799 1134298 - 1134281 - f 78 -11.3 -2.62144 | opp_overlap 1134281, overlap 1134280 1134278 TTGAAATCAGAAGAG CCGAGCT ATTT AGCTCGG TTTTTTTATAAATTC TERM 1800 1134755 - 1134741 - g 70 -5.6 -4.33927 | opp_overlap 1134741 1134740 AAAGATAAAATTAAA GGTGCG ATT CGTACC GATTTTATTTTGTCG APJL_1024 1134336 - 1135205 + | inner membrane protein TERM 1801 1135223 - 1135246 + T 100 -9.6 -5.31275 | opp_overlap 1135223 CATACCCGCAAAAAA GCCGCTTATC TTTC GATAAACGGC TTTTTTATCGTCCGA TERM 1802 1135246 - 1135223 - T 100 -11.8 -5.04385 | opp_overlap 1135223 CATACCCGCAAAAAA GCCGCTTATC TTTC GATAAACGGC TTTTTTATCGTCCGA TERM 1803 1135257 - 1135271 + T 71 -4.2 -4.74103 | ACGGCTTTTTTATCG TCCGAA TTA TACGGA TTTTTCAATTAACGC hemY 1136513 - 1135263 - | HemY protein hemX 1137865 - 1136525 - | putative uroporphyrinogen IIIC-methyltransferase TERM 1804 1137334 - 1137324 - G 88 -6.8 -5.14563 | opp_overlap 1137324 TTGTTGAGTAAAAAA TCCG CAT CGGA TAATTTCCAAACAAC hemD 1138588 - 1137875 - | uroporphyrinogen-III synthase hemC 1139592 - 1138648 - | porphobilinogen deaminase TERM 1805 1140169 - 1140185 + G 71 -10.1 -2.62616 | opp_overlap 1140168 1140169, overlap 1140171 CGGTATTACCGAAAT CGCCGAC CCT GTCGGTG TCGTATGCGGCATAA TERM 1806 1140867 - 1140850 - g 70 -2.7 -4.91852 | GCCACCAAAAACAAA CATCCTA CTTG CAGAATG TGCGTTTGTCGGTGA adh2 1139846 - 1142461 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 1807 1142534 - 1142515 - T 87 -12.2 -3.25802 | opp_overlap 1142515 GATGAAATGTACCAA GGGCTAAC AAAA GTTAGCCC TTTTTTTCATATTTT TERM 1808 1142515 - 1142534 + T 100 -12.2 -5.69023 | opp_overlap 1142515 GATGAAATGTACCAA GGGCTAAC AAAA GTTAGCCC TTTTTTTCATATTTT TERM 1809 1142582 - 1142607 + T 87 -11.9 -3.14344 | opp_overlap 1142584, overlap 1142584 GATATAATATAAAAA AACCTCCGAGA AATT TCTCGGAGGTC TTAATGAACAAACTA TERM 1810 1142584 - 1142605 + T 100 -14.5 -3.13403 | opp_overlap 1142584, overlap 1142582 TATAATATAAAAAAA CCTCCGAGA AATT TCTCGGAGG TCTTAATGAACAAAC TERM 1811 1142605 - 1142584 - T 100 -14.5 -5.84432 | opp_overlap 1142584 1142582 TATAATATAAAAAAA CCTCCGAGA AATT TCTCGGAGG TCTTAATGAACAAAC groEL 1144278 - 1142635 - | 60 kDa chaperonin TERM 1812 1143647 - 1143657 + g 82 -8.2 -4.25056 | TCTAATTCAACCGTA CCGG CTT CCGG TTTGTTGATGAAGTA groES 1144628 - 1144338 - | 10 kDa chaperonin TERM 1813 1144785 - 1144810 + r 85 -9.7 -3.90318 | opp_overlap 1144785 TTTTAGACAAAAAAA TCCTCCGAGCT TTTC AGCTCAGGGGA TTTGTAAAGTAATAC TERM 1814 1144810 - 1144785 - R 100 -9.7 -5.71712 | opp_overlap 1144785 TTTTAGACAAAAAAA TCCTCCGAGCT TTTC AGCTCAGGGGA TTTGTAAAGTAATAC deoD 1145562 - 1144840 - | purine-nucleoside phosphorylase deoC 1146397 - 1145621 - | deoxyribose-phosphate aldolase TERM 1815 1146518 - 1146488 - R 76 -7.7 -4.11692 | gap 1, opp_overlap 1146494, overlap 1146494 TACTTAGCTCTAAAA CGACAACACCACTG TTTC CAGTGGTGTT-TCT ATAAATCAATTGCGA TERM 1816 1146494 - 1146513 + r 93 -12.2 -4.06678 | opp_overlap 1146488 1146494 GCTCTAAAACGACAA CACCACTG TTTC CAGTGGTG TTTCTATAAATCAAT TERM 1817 1146513 - 1146494 - R 93 -12.2 -3.68359 | opp_overlap 1146494, overlap 1146488 GCTCTAAAACGACAA CACCACTG TTTC CAGTGGTG TTTCTATAAATCAAT APJL_1034 1147802 - 1146534 - | nucleoside permease APJL_1035 1148016 - 1148660 + | hypothetical protein TERM 1818 1148648 - 1148705 + T 80 -10.2 -3.51329 | opp_overlap 1148694, overlap 1148649 1148699 TTTAGTACGCTATTT TCAAGCGGTCTGATTTTGCAC-GCTTTT TGCA AAAAGCAGAG-AAAATCAAACCGCTTGC TTGTAATTAAGCGTG TERM 1819 1148649 - 1148704 + T 93 -13.7 -2.70476 | opp_overlap 1148694, overlap 1148648 1148699 TTAGTACGCTATTTT CAAGCGGTCTGATTTTGCAC-GCTTTT TGCA AAAAGCAGAG-AAAATCAAACCGCTTG CTTGTAATTAAGCGT eda 1149353 - 1148712 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase rbsK1 1150282 - 1149368 - | sugar kinase uxaC 1150915 - 1150325 - | glucuronate isomerase APJL_1039 1151217 - 1152695 + | alpha-glucosidase APJL_1040 1152699 - 1152935 + | transcriptional regulator APJL_1041 1152910 - 1153338 + | hypothetical protein APJL_1042 1153582 - 1154088 + | peptide methionine sulfoxide reductase TERM 1820 1154120 - 1154093 - T 100 -7 -5.5604 | opp_overlap 1154097, overlap 1154097 GTAATCAATAAAAAA TTAAGGCGTATC ATTG GATACGCCTTTT TATTATTTACGCATT TERM 1821 1154097 - 1154116 + T 100 -12.2 -5.38549 | opp_overlap 1154093 1154097 TCAATAAAAAATTAA GGCGTATC ATTG GATACGCC TTTTTATTATTTACG TERM 1822 1154116 - 1154097 - T 93 -12.2 -4.04157 | opp_overlap 1154097, overlap 1154093 TCAATAAAAAATTAA GGCGTATC ATTG GATACGCC TTTTTATTATTTACG lsgF 1154923 - 1154123 - | putative UDP-galactose--lipooligosaccharide galactosyltransferase lsgE 1155804 - 1154923 - | putative lipooligosaccharide galactosyltransferase APJL_1045 1156996 - 1155797 - | hypothetical protein TERM 1823 1156084 - 1156074 - G 71 -4.6 -4.63218 | overlap 1156075 GCTTGGCGAATAAAA CCGG AAT CCGA TCCGCCGTAATAACT TERM 1824 1156473 - 1156461 - G 82 -3.3 -5.46657 | TATGCCAATAAAAAA TGCAG TAA CAGCA TATAGAAAATACTTA lsgD 1157767 - 1156997 - | glycosyltransferase involved in LPS biosynthesis TERM 1825 1157470 - 1157442 - G 84 -9.8 -3.76224 | gap 1, overlap 1157463 TTTTCATTGAGTAAA GCGGTCAAATTTT GCTG AAAATTTG-CCGC AAATAAACAGTCATC APJL_1047 1158897 - 1157764 - | hypothetical protein TERM 1826 1158094 - 1158070 - G 86 -5.7 -5.34309 | overlap 1158075 ACTACTAAAGAAAAA GCTAATTACCG GCT CGGCAAGTAAC GGTACTAACACAATT TERM 1827 1158447 - 1158434 - G 82 -6.7 -4.83243 | GCCAGATAAAACAAA CAAGC GATC GCTTG AATGGAACTGAATAA TERM 1828 1158906 - 1158887 - G 77 -5 -5.07652 | overlap 1158890 TGCGCCAAAATAAAA GAACTTAC CATG GTAAGCCC CATACTCAAGACGGT TERM 1829 1158903 - 1158890 - G 73 -5.3 -4.6313 | overlap 1158887 GCCAAAATAAAAGAA CTTAC CATG GTAAG CCCCATACTCAAGAC APJL_1048 1159915 - 1158950 - | exopolysaccharide biosynthesis protein TERM 1830 1158990 - 1159010 + g 80 -4.7 -5.08824 | TCAATATCTTTTGTC CATTGGTTG TAA TAACCGGTG TTTTTTCCGTAGGAG TERM 1831 1159509 - 1159531 + g 80 -6.2 -4.77896 | opp_overlap 1159498 1159497, overlap 1159509 1159511 1159514 1159515 AAATGGCAATCTTTG TGTGCGGCAA AAA TTGCCGCCGA TTTTTGCATTGCTTC TERM 1832 1159686 - 1159699 + g 71 -2.4 -5.23016 | overlap 1159696 CAAAGAATCGTTGAA TTCG GCGTGA CGAA TTTTTTCGCTTCTTT TERM 1833 1159793 - 1159775 - G 71 -3 -5.02476 | ATAGTCCTTAAAAAA CTGTTCCG TAC CGGCATAG ATCAATAAATCCCCT TERM 1834 1159826 - 1159803 - G 82 -8.2 -4.31293 | GCATAGATCAATAAA TCCCCTACAT TTAA ATGCAGAGGA TAGTCAAAATACAGT TERM 1835 1160180 - 1160192 + G 75 -3.4 -5.1287 | opp_overlap 1160180 ATTTAAAAAAAATCA GCTA CAGTT TAGC TTTTTTAGGTATCGG APJL_1049 1160071 - 1160811 + | hypothetical protein TERM 1836 1160871 - 1160822 - T 87 -11.7 -3.54146 | opp_overlap 1160822, overlap 1160818 AATAGCCTAAATGAA GCGGTCTGATTTTCGTTATTTTT TGTA AAAAATATGGAAAATCAGGCCAC TTGTCGTATGAATCC TERM 1837 1160822 - 1160871 + T 87 -11.7 -3.47573 | opp_overlap 1160818 1160822 AATAGCCTAAATGAA GCGGTCTGATTTTCGTTATTTTT TGTA AAAAATATGGAAAATCAGGCCAC TTGTCGTATGAATCC priA 1163131 - 1160891 - | primosome assembly protein PriA TERM 1838 1161029 - 1161043 + g 74 -4.2 -5.03314 | opp_overlap 1161029 AATTAATAAAAGCCA GCGG TAATGCC CCGC TTTTTTAGCCATCGG TERM 1839 1161991 - 1162001 + g 70 -5.4 -4.44974 | GCTCAATAAACTTAC CGTT TTG AACG TTTTGTACGCTTTCC TERM 1840 1162679 - 1162693 + g 77 -5 -5.01732 | TTCTGCCAGTTTCGC CAGTAA ATC TTGCTG TTTTTTGGCCCGCTT TERM 1841 1163156 - 1163121 - G 100 -8.4 -5.57396 | opp_overlap 1163126 1163148 ATAATCAATAAAAAA CGAAAGGACAATAGCT TATT ATCTATTGCCCTTTGG GGTTTTGCAAAAAAA pheA 1164349 - 1163192 - | prephenate dehydratase / chorismate mutase TERM 1842 1164457 - 1164410 - R 100 -11.5 -5.94713 | opp_overlap 1164415 1164424, overlap 1164412 1164415 AGTCGATAAAAAAAA GATAAGCGGTCGAATTTGCAA GATTTT TTGCAAATTTGACCGCTTGTA AGAATAGAAAGGGGT TERM 1843 1164455 - 1164412 - R 100 -14.1 -4.62054 | opp_overlap 1164415 1164424, overlap 1164410 1164415 TCGATAAAAAAAAGA TAAGCGGTCGAATTTGCAA GATTTT TTGCAAATTTGACCGCTTG TAAGAATAGAAAGGG TERM 1844 1164452 - 1164415 - R 100 -15.8 -4.36984 | opp_overlap 1164415 1164424, overlap 1164412 1164410 ATAAAAAAAAGATAA GCGGTCGAATTTGCAA GATTTT TTGCAAATTTGACCGC TTGTAAGAATAGAAA TERM 1845 1164415 - 1164452 + r 100 -18.7 -3.31144 | opp_overlap 1164412 1164410 1164415, overlap 1164424 ATAAAAAAAAGATAA GCGGTCGAATTTGCAAG ATTT TTTGCAAATTTGACCGC TTGTAAGAATAGAAA prlC 1166505 - 1164472 - | oligopeptidase A TERM 1846 1166638 - 1166590 - R 100 -15.5 -5.27335 | opp_overlap 1166586 TCTTTCAAATAAAAA GCGGACGGAATTAGTGCATTTTT TAC AAAAATAGACTAAATCCGACCGC TGAATGATTAGTATT pflA 1167383 - 1166646 - | pyruvate formate lyase-activating enzyme 1 TERM 1847 1167490 - 1167446 - R 100 -18.1 -4.34759 | overlap 1167449 CAGAATATCAATAAA GAAGCGGTCAGATTCCGCAAA AAT TTTGCAAAATCCGACCGCTTA AAAGAATGCAATGTG TERM 1848 1167487 - 1167449 - R 100 -19.8 -4.26924 | overlap 1167446 AATATCAATAAAGAA GCGGTCAGATTCCGCAAA AAT TTTGCAAAATCCGACCGC TTAAAAGAATGCAAT pflB 1169823 - 1167511 - | formate acetyltransferase focA 1170740 - 1169916 - | formate transporter TERM 1849 1170277 - 1170295 + g 71 -4.6 -4.73682 | CCGAGGGTAAAAGCC TCCATC CAAGTAT GATGGA TTTTATGTTGTGCCG APJL_1056 1170946 - 1171428 + | hypothetical protein TERM 1850 1171435 - 1171487 + T 72 -8.5 -3.52234 | opp_overlap 1171442, overlap 1171442 TGGTTTTAAGGCCAG TAAAAAAGCGGTCTGTTCTTGCAAG TTT TTTGCAAAATCAGACCGCTTGTCGA TTATAAGTTTCTTAA TERM 1851 1171480 - 1171442 - T 100 -16.9 -5.16237 | opp_overlap 1171442 1171435 AAGGCCAGTAAAAAA GCGGTCTGTTCTTGCAA GTTTT TTGCAAAATCAGACCGC TTGTCGATTATAAGT TERM 1852 1171442 - 1171480 + T 100 -15.4 -3.45321 | opp_overlap 1171442, overlap 1171435 AAGGCCAGTAAAAAA GCGGTCTGTTCTTGCAAG TTT TTTGCAAAATCAGACCGC TTGTCGATTATAAGT htpX 1172357 - 1171488 - | heat shock protein HtpX dinP 1173515 - 1172445 - | DNA polymerase IV APJL_1059 1173622 - 1174530 + | hypothetical protein TERM 1853 1174562 - 1174533 - T 91 -9.4 -4.38712 | opp_overlap 1174538, overlap 1174538 CTTAGCCGGATAAAA CAAAATGGCAGG GTTATA CCTGCCATTTTT TGTTTCTTAATCCAC TERM 1854 1174538 - 1174557 + T 100 -9.3 -5.80003 | opp_overlap 1174538 1174533 CCGGATAAAACAAAA TGGCAGG GTTATA CCTGCCA TTTTTTGTTTCTTAA TERM 1855 1174557 - 1174538 - T 100 -9.3 -5.18371 | opp_overlap 1174538, overlap 1174533 CCGGATAAAACAAAA TGGCAGG GTTATA CCTGCCA TTTTTTGTTTCTTAA menF 1175849 - 1174569 - | menaquinone-specific isochorismate synthase APJL_1061 1176013 - 1177230 + | aminotransferase AlaT TERM 1856 1177238 - 1177257 + F 100 -15 -3.19789 | overlap 1177252 AATCTTAATCTTTTC TCCGCCCC TATT GGGGCGGA TTACGTCTTACCTAT TERM 1857 1177421 - 1177444 + G 81 -5.4 -5.22039 | CTATTTTTTGCGATT TTCGTGTT AAAGAAAC AACACGAA TTTTTTGCGTTTGCC APJL_1062 1177274 - 1178167 + | permease rarD 1178168 - 1179034 + | permease APJL_1064 1179031 - 1179648 + | putative threonine efflux protein TERM 1858 1179720 - 1179693 - T 100 -9.9 -5.00616 | opp_overlap 1179693 TTTTTTTGTAAAAAA TCCCCGAGAGT TTGTCC ACTTTCGGGGA TTTTTTTATTAGAAA TERM 1859 1179693 - 1179720 + T 100 -12.1 -5.7946 | opp_overlap 1179693 TTTTTTTGTAAAAAA TCCCCGAGAGT TTGTCC ACTTTCGGGGA TTTTTTTATTAGAAA hgbA 1182575 - 1179729 - | hemoglobin and hemoglobin-haptoglobin-binding protein 4 precursor TERM 1860 1182427 - 1182442 + g 80 -2.6 -5.5112 | overlap 1182437 AGTTGTTTTGCAGAT TTTTTG ATTT CAGAAA TTTTTTGTTGCTGAA TERM 1861 1182623 - 1182600 - R 100 -11.8 -5.84432 | opp_overlap 1182597 GACAAGATAAAAAAA CTGTGCTAGC CAAA ACTAGCACAG TAAATGTTTAATTAT hugZ 1183156 - 1182635 - | putative heme iron utilization protein TERM 1862 1182729 - 1182713 - G 81 -9.5 -3.75461 | opp_overlap 1182702 1182701 1182713 1182712, overlap 1182702 GAAAGCTTTACCAAA GCCTTTT ACG AAAAGGC CTTGTGTCGGTCTAA TERM 1863 1183341 - 1183318 - R 100 -9.6 -5.31275 | opp_overlap 1183318 TTGGAGCATAAAAAA GGAGCAATCC GTTA AGATTGCCCC TCTCTCATCACTTGA nrfG 1184106 - 1183360 - | formate-dependent nitrite reductase complex NrfG subunit nrfF 1184518 - 1184084 - | formate-dependent nitrite reductase complex NrfF subunit dsbE2 1185051 - 1184518 - | thiol:disulfide interchange protein TERM 1864 1184573 - 1184583 + g 75 -3.2 -5.1356 | overlap 1184563 TCCTGCTCGAAATCC GGGT TAT ATCC TTTTTGTTGGTAACG nfrE 1186969 - 1185053 - | cytochrome c-type biogenesis protein TERM 1865 1185298 - 1185284 - G 72 -9.2 -3.10028 | overlap 1185276 ACGAATATCGTAATA GCGGCG CTC CGCCAC TACCGTCGCAAGCGT TERM 1866 1185877 - 1185864 - G 71 -4.5 -4.58663 | overlap 1185853 ATCATCGGGTAAAAA GTCCC GAGT AGGAC AACCGAAGTCGCTAC TERM 1867 1187096 - 1187081 - R 95 -10.4 -4.56914 | opp_overlap 1187081 TTATGTAAACGAAAA GGGCGA TAAC TCGCCC TTTGTTGTTAAGATA TERM 1868 1187081 - 1187096 + r 95 -10.4 -4.45738 | opp_overlap 1187081 TTATGTAAACGAAAA GGGCGA TAAC TCGCCC TTTGTTGTTAAGATA kefB 1189005 - 1187140 - | glutathione-regulated potassium-efflux system protein TERM 1869 1188511 - 1188481 - G 82 -7.6 -4.56597 | gap 1 TTCCGGCGCCAAAAA GGCAATCGTCGCC AACAAA GGC-ACGATAGCC AAATCTTCAAATAAT TERM 1870 1188939 - 1188959 + g 75 -5.4 -4.81083 | overlap 1188941 GCACAATCGTAATAC TGGTAGCG AGTAA CGCTACGA TTTTTGCTAATTCCG cyaA 1191622 - 1189094 - | adenylate cyclase TERM 1871 1191375 - 1191363 - G 71 -6.9 -4.24002 | opp_overlap 1191370 TCGGAAAGTTCAAAA GCGGC GAT ACCGC TCGGTGCGTTTTTTA fabB 1191877 - 1193097 + | 3-oxoacyl-(acyl carrier protein) synthase I TERM 1872 1193144 - 1193112 - f 79 -10.8 -3.08671 | opp_overlap 1193112 1193120, overlap 1193120 GACAACCATATAAAG TAAAAAAAGTGCGT TTAAT ACGCACTTTTTTAA TATCCTAAGCGGTCG TERM 1873 1193112 - 1193144 + F 79 -10.8 -2.78816 | opp_overlap 1193112 1193120, overlap 1193120 GACAACCATATAAAG TAAAAAAAGTGCGT TTAAT ACGCACTTTTTTAA TATCCTAAGCGGTCG TERM 1874 1193120 - 1193136 + F 93 -8 -5.23316 | opp_overlap 1193112 1193120, overlap 1193112 TATAAAGTAAAAAAA GTGCGT TTAAT ACGCAC TTTTTTAATATCCTA TERM 1875 1193136 - 1193120 - f 100 -8 -5.75822 | opp_overlap 1193120 1193112, overlap 1193112 TATAAAGTAAAAAAA GTGCGT TTAAT ACGCAC TTTTTTAATATCCTA APJL_1074 1193289 - 1193798 + | transposase and inactivated derivative TERM 1876 1193967 - 1193985 + G 71 -2.4 -5.09225 | ACGGCTATCGTCGTA TTACGTTA AAG TTACGTGA TTTTTTGGGTGCGAT TERM 1877 1194613 - 1194581 - g 100 -25.1 -4.5852 | opp_overlap 1194581 CAAGTGAAATTAAAA GGACTGAGCCCTGTA CAA TACAGGGCTCAGTCC TTAAATTAAACAGTC TERM 1878 1194581 - 1194613 + G 100 -25.1 -3.17392 | opp_overlap 1194581 CAAGTGAAATTAAAA GGACTGAGCCCTGTA CAA TACAGGGCTCAGTCC TTAAATTAAACAGTC APJL_1075 1193804 - 1194622 + | transposase APJL_1076 1194769 - 1195116 + | hypothetical protein APJL_1077 1195172 - 1195768 + | hypothetical protein APJL_1078 1195809 - 1196183 + | hypothetical protein TERM 1879 1196482 - 1196494 + G 70 -5.5 -4.4261 | opp_overlap 1196482 TGGCGTAAAGAAAAT CTGGA TAT TCCGG TTTTAATCTTAACCG ygiX 1196221 - 1196937 + | transcriptional regulatory protein TERM 1880 1197317 - 1197283 - g 71 -5 -4.59109 | CAGAGGCTTTAAAAA CGTCCGCTTAATCG AACACGA CGATGAAGAAGACG AAGTGGATACATGGC ygiY 1196930 - 1198306 + | sensor protein TERM 1881 1198325 - 1198345 + T 100 -7.6 -5.82036 | opp_overlap 1198319 1198325 AGCCGAAGAGAAAAA GACGAAGT TTTCC GCTTCGTC TTTTTTATTTATTGT TERM 1882 1198345 - 1198325 - T 90 -6.9 -5.09762 | opp_overlap 1198325, overlap 1198319 AGCCGAAGAGAAAAA GACGAAG TTTTCCG CTTCGTC TTTTTTATTTATTGT APJL_1081 1198914 - 1198354 - | hypothetical protein TERM 1883 1198899 - 1198887 - G 70 -5.5 -4.46617 | AAAACAAACCGAAAA CGACC GCT AGTCG AGTGATTTTTCTCAC TERM 1884 1199046 - 1199063 + H 72 -4.1 -4.89567 | opp_overlap 1199045 1199041 TTTTAAACACCAATT TTCCCAT TCAT ACGGGAA TTTTGTCTTTTCAAC yajC 1199108 - 1199404 + | preprotein translocase subunit YajC TERM 1885 1199581 - 1199567 - g 79 -11.4 -2.56596 | overlap 1199563 GCGGTCAGCAAGCGA CGAGCG AAA CGCTCG TTCAAGTACAGGGAA TERM 1886 1199650 - 1199626 - g 78 -9.4 -3.59087 | gap 1, opp_overlap 1199626 1199629, overlap 1199629 AATATCACCCCGAAA TC-AGCCGTTC TCGA GAACGGCTCGA TTTTAGTGCGTTTAG TERM 1887 1199626 - 1199650 + G 88 -9.4 -4.33165 | gap 1, opp_overlap 1199626 1199629, overlap 1199629 AATATCACCCCGAAA TC-AGCCGTTC TCGA GAACGGCTCGA TTTTAGTGCGTTTAG TERM 1888 1199646 - 1199629 - g 83 -11.3 -2.91873 | opp_overlap 1199629 1199626, overlap 1199626 ATCACCCCGAAATCA GCCGTTC TCGA GAACGGC TCGATTTTAGTGCGT TERM 1889 1199629 - 1199646 + G 81 -11.3 -2.78049 | opp_overlap 1199626 1199629, overlap 1199626 ATCACCCCGAAATCA GCCGTTC TCGA GAACGGC TCGATTTTAGTGCGT TERM 1890 1199955 - 1199941 - g 74 -4.2 -5.03747 | AAAGCGGTTAAAAAA GGCGAA AAT TTTGCC ACGGTAATTGAATTT secD 1199464 - 1201278 + | preprotein translocase subunit SecD secF 1201289 - 1202263 + | preprotein translocase subunit SecF TERM 1891 1202340 - 1202309 - f 85 -11.6 -3.29056 | opp_overlap 1202310 1202314, overlap 1202310 1202314 AATCAATACAATATA TCAAAGGGGTGGAA GTTT TTCCGCCCCTTTGT CGTATCCGGATTTCG TERM 1892 1202339 - 1202310 - f 95 -15.1 -2.56349 | opp_overlap 1202310 1202314, overlap 1202309 1202314 ATCAATACAATATAT CAAAGGGGTGGAA GTTT TTCCGCCCCTTTG TCGTATCCGGATTTC TERM 1893 1202310 - 1202339 + F 100 -17.3 -2.64107 | opp_overlap 1202309 1202310 1202314, overlap 1202314 ATCAATACAATATAT CAAAGGGGTGGAA GTTT TTCCGCCCCTTTG TCGTATCCGGATTTC TERM 1894 1202335 - 1202314 - f 85 -10.1 -3.96051 | opp_overlap 1202314 1202310, overlap 1202310 1202309 ATACAATATATCAAA GGGGTGGAA GTTT TTCCGCCCC TTTGTCGTATCCGGA TERM 1895 1202314 - 1202335 + F 93 -12.3 -4.0162 | opp_overlap 1202310 1202309 1202314, overlap 1202310 ATACAATATATCAAA GGGGTGGAA GTTT TTCCGCCCC TTTGTCGTATCCGGA TERM 1896 1202447 - 1202429 - g 91 -6.1 -5.55769 | TGTTACAACAAAAAA TCATTGA TAAAC TCAATGA ACAAATTAACTTAGA TERM 1897 1202517 - 1202535 + G 70 -7.4 -3.84246 | opp_overlap 1202516 1202515, overlap 1202518 GTGCTCAAAAAACGG TTTTGCCG GTG CGGCAAAC TTCTTACTTCGTCAT TERM 1898 1202518 - 1202534 + G 77 -10.9 -2.89824 | opp_overlap 1202516 1202515, overlap 1202517 TGCTCAAAAAACGGT TTTGCCG GTG CGGCAAA CTTCTTACTTCGTCA ftnA 1202413 - 1202919 + | ferritin-like protein 1 ftnB 1202919 - 1203416 + | ferritin-like protein 2 TERM 1899 1203476 - 1203514 + F 88 -8.2 -4.57341 | opp_overlap 1203475 1203477 1203479, overlap 1203479 1203510 1203513 TTGTGACCACAGAAT ACACGGGCTTCACAAAAA TTA TTTTAGTGAAGTCCGTTC TTTTTAAGAAAGATT TERM 1900 1203513 - 1203477 - f 76 -9.5 -3.34902 | opp_overlap 1203476 1203479 1203510, overlap 1203475 1203479 TGTGACCACAGAATA CACGGGCTTCACAAAAA TTA TTTTAGTGAAGTCCGTT CTTTTTAAGAAAGAT TERM 1901 1203511 - 1203479 - f 87 -12.1 -3.24076 | opp_overlap 1203479 1203476 1203510, overlap 1203477 1203475 TGACCACAGAATACA CGGGCTTCACAAAAA TTA TTTTAGTGAAGTCCG TTCTTTTTAAGAAAG TERM 1902 1203479 - 1203511 + F 100 -14.3 -4.40561 | opp_overlap 1203477 1203475 1203479, overlap 1203476 1203510 TGACCACAGAATACA CGGGCTTCACAAAAA TTA TTTTAGTGAAGTCCG TTCTTTTTAAGAAAG TERM 1903 1203945 - 1203959 + G 91 -8.6 -4.71426 | GTATCTCGATTCCGG TTGCAC TCG GTGCAA TTTTCTTGATGGGGG APJL_1087 1203656 - 1204957 + | putative xanthine/uracil permease TERM 1904 1205004 - 1204968 - T 83 -5.8 -5.09426 | opp_overlap 1204968 1204966 TTTAATTCGAAAAAA GACCGCTTGTTGGCTC TGTTC AAGGTTACAAGCGGTC TAATTTTTTAAAAAA APJL_1088 1205602 - 1205012 - | putative MAF protein APJL_1089 1205758 - 1206300 + | putative macrophage infectivity potentiator-related protein thiI 1207793 - 1206396 - | thiamine biosynthesis protein ThiI TERM 1905 1207882 - 1207919 + r 89 -10.9 -4.08394 | gap 1, opp_overlap 1207882 AAGTTGCCCAAACAA GCAGTTAAATTTCGCTAA AAA TTTGC-AAATTTAACTGC TTTTCAGACAAGTAT TERM 1906 1207919 - 1207882 - R 89 -10.9 -3.91488 | gap 1, opp_overlap 1207882 AAGTTGCCCAAACAA GCAGTTAAATTTCGCTAA AAA TTTGC-AAATTTAACTGC TTTTCAGACAAGTAT TERM 1907 1208003 - 1207945 - R 100 -19.9 -4.68456 | gap 1, opp_overlap 1207958, overlap 1207946 AGTATCAAAAAACAA TTACCACGGAAAGCACGGAATACACAGA AAAT TCCGTGAACTCCGTGTTTTCCGTGGTA- AGAAAACAACTTAAA TERM 1908 1208003 - 1207946 - R 100 -25.9 -3.39447 | opp_overlap 1207958, overlap 1207945 GTATCAAAAAACAAT TACCACGGAAAGCACGGAATACACAGA AAAT TCCGTGAACTCCGTGTTTTCCGTGGTA AGAAAACAACTTAAA TERM 1909 1207958 - 1207991 + r 81 -8.1 -4.21194 | opp_overlap 1207945 1207946 AATTACCACGGAAAG CACGGAATACACAGA AAAT TCCGTGAACTCCGTG TTTTCCGTGGTAAGA purA 1209329 - 1208031 - | adenylosuccinate synthetase TERM 1910 1208283 - 1208299 + g 74 -4.5 -4.74706 | TTCACCGTTTGGCAT TTTGTAT GCA GTACAAA TTTTTAACTCTTCAA TERM 1911 1208914 - 1208950 + g 82 -4.5 -5.2853 | gap 3, overlap 1208939 CGAGCCACTTTATCC TC-GTACG-CCGGAC-CG ATAC CGCGACCGGTCGTACCGA TTTTGTTTTTACCTA TERM 1912 1209507 - 1209478 - R 88 -5.2 -5.76237 | gap 2, opp_overlap 1209486, overlap 1209484 GAGAGAAATAAAAAA GTTAAAGACCCGAT ATAG ATCGGGTC-TT-AC GGATACAATTATTTT TERM 1913 1209503 - 1209484 - R 93 -12.2 -4.0964 | opp_overlap 1209486, overlap 1209478 AATAAAAAAGTTAAA GACCCGAT ATAG ATCGGGTC TTACGGATACAATTA TERM 1914 1209486 - 1209501 + r 70 -9 -3.04263 | opp_overlap 1209484 1209478 TAAAAAAGTTAAAGA CCCGAT ATAG ATCGGG TCTTACGGATACAAT hflC 1210403 - 1209516 - | HflC protein TERM 1915 1209763 - 1209779 + g 75 -3 -5.10208 | gap 1, overlap 1209759 1209766 TTCTTATCTACTTCG GCACGAA TAAT TTCG-GC TTTTTCTTCACCTTG TERM 1916 1209933 - 1209947 + g 78 -7.1 -4.57569 | overlap 1209926 TTCGGCACCGTCATC GCCGT CATTT ACGGC TTTTTGCGCACCTGC hflK 1211596 - 1210406 - | HflK protein TERM 1917 1210499 - 1210509 + g 71 -4.6 -4.62471 | opp_overlap 1210499 TTGCTGGACTACAAT CGGC GCC GCTG TTTTTGCCGGTTCGG TERM 1918 1211755 - 1211736 - R 100 -8.5 -5.27335 | TTTTGCAAATAAAAA GGGCGAG AAATTA CCCGCCC CGATTTATAAATTAA trxA 1212091 - 1211774 - | thioredoxin TERM 1919 1212144 - 1212127 - R 100 -8.4 -5.10163 | opp_overlap 1212127 AATCCGAAAAGAAAA CGCCAC TTGACC GTGGCG TTAAGTTACACCGTA APJL_1095 1213519 - 1212227 - | putative xanthine permease TERM 1920 1212834 - 1212857 + g 76 -6.6 -4.57569 | opp_overlap 1212826 1212830 CCGAAATGCAACGGC TGCGGAATCG CAAA CGTATCCGCA TTTTTCACCGCATCA TERM 1921 1213652 - 1213609 - R 100 -17.8 -5.18561 | opp_overlap 1213612, overlap 1213612 TAAACAGTTAAAAAA TAAGCGGTTGAATTTACAAA TTTC TCTGTAAATTCAACCGCTTT ATATTAATTAAACTA TERM 1922 1213649 - 1213612 - R 100 -19.5 -4.65666 | opp_overlap 1213612, overlap 1213609 ACAGTTAAAAAATAA GCGGTTGAATTTACAAA TTTC TCTGTAAATTCAACCGC TTTATATTAATTAAA TERM 1923 1213612 - 1213649 + r 100 -17.3 -4.2772 | opp_overlap 1213609 1213612 ACAGTTAAAAAATAA GCGGTTGAATTTACAAA TTTC TCTGTAAATTCAACCGC TTTATATTAATTAAA metK 1214832 - 1213681 - | S-adenosylmethionine synthetase APJL_1097 1215052 - 1215945 + | homocysteine/selenocysteine methylase(S-methylmethionine-dependent) TERM 1924 1216656 - 1216668 + G 70 -7.7 -3.59262 | overlap 1216635 AAACACGATGTTGAT TACCC TTT GGGTA TTTACCGGTGTGGAA arcD1 1216036 - 1217451 + | putative arginine/ornithine antiporter TERM 1925 1217462 - 1217487 + F 100 -8.3 -5.98675 | opp_overlap 1217460 1217462 GCTAAAAAGATAATA TCCTCTCGTGC TTCG GCATTAGAGGA TTTTTTATTTTTATG TERM 1926 1217681 - 1217700 + G 71 -5 -4.70772 | overlap 1217684 ACTCAGCGGTTGGCT TATTACCG GTAT CGGTATTA TTTTCTTAGGTCTAT TERM 1927 1217684 - 1217697 + G 76 -6.7 -4.44914 | overlap 1217681 CAGCGGTTGGCTTAT TACCG GTAT CGGTA TTATTTTCTTAGGTC TERM 1928 1218062 - 1218072 + G 82 -8.2 -4.38116 | GCTCTTTTTATTTAT CGGC TTA GCCG TTTGGTTTTTCTCAC TERM 1929 1218814 - 1218827 + G 71 -2.3 -5.16133 | TTGTACTCTACGTAC CGGGG CTTG CTCTG TTTTTCTATTCTCGT arcD2 1217547 - 1218953 + | putative arginine/ornithine antiporter protein TERM 1930 1219180 - 1219198 + G 74 -8.1 -3.91984 | overlap 1219161 1219160 CGTGTTTTATACACT CGCCGAG TTTGT TTCGGCG TTATTTAGCGAATCT APJL_1100 1218962 - 1219741 + | hypothetical protein argE 1219756 - 1220898 + | acetylornithine deacetylase TERM 1931 1220954 - 1220936 - T 100 -11.7 -5.18726 | opp_overlap 1220936 TTTTTACAACAAAAA GGGAGCG ATTAA CGCTCCC TTTCTCATAACAGTT TERM 1932 1220936 - 1220954 + T 91 -11.7 -3.96892 | opp_overlap 1220936 TTTTTACAACAAAAA GGGAGCG ATTAA CGCTCCC TTTCTCATAACAGTT ompW 1221626 - 1220979 - | outer membrane protein ompW precursor TERM 1933 1221676 - 1221661 - H 88 -3.3 -5.93252 | opp_overlap 1221661 CTTAAAAATAAAAAA GTAAC CAATTC GTTAC GTTAATAACATTCTA TERM 1934 1223170 - 1223150 - g 75 -8.3 -3.77219 | ATTATTCAACTTAAA TTGGAACGC CAA GCGTTACAA AAAGAGGAAGATGAA clpB 1221887 - 1224460 + | ATP-dependant Clp protease chain B TERM 1935 1224509 - 1224473 - T 100 -16.7 -4.08948 | opp_overlap 1224473 TAATTCCATAAACAA GCGGTCGAGTTTGCAGA AAT TTTGCAAATTCGACCGC TTTTCTTTTAGGCGT TERM 1936 1224473 - 1224509 + T 100 -21.1 -5.08255 | opp_overlap 1224473 TAATTCCATAAACAA GCGGTCGAGTTTGCAGA AAT TTTGCAAATTCGACCGC TTTTCTTTTAGGCGT acr3 1225518 - 1224517 - | arsenite efflux pump ACR3 arsC 1225934 - 1225530 - | arsenate reductase TERM 1937 1225981 - 1226005 + r 78 -8.7 -3.66654 | opp_overlap 1225981 TGTTAAGGTAAAAAA TTTTGTGGG CATTTCA CCCACAAAA TTTGCAATTCGGATC TERM 1938 1226005 - 1225981 - R 100 -10.1 -5.15969 | opp_overlap 1225981 TGTTAAGGTAAAAAA TTTTGTGGGCA TTT CACCCACAAAA TTTGCAATTCGGATC APJL_1106 1226308 - 1225994 - | putative transcriptional regulator TERM 1939 1226366 - 1226325 - R 89 -11.3 -3.89893 | opp_overlap 1226335 1226337, overlap 1226322 1226326 ACAATATTATAACAA GCTTATTGAATATTTCAAT AACC ATTGAAATATTCAATAAAA AAATAGCGGTCGTCT TERM 1940 1226365 - 1226326 - R 100 -14.8 -2.92851 | opp_overlap 1226335 1226337, overlap 1226322 1226325 CAATATTATAACAAG CTTATTGAATATTTCAAT AACC ATTGAAATATTCAATAAA AAAATAGCGGTCGTC TERM 1941 1226410 - 1226370 - R 91 -4.8 -5.8187 | gap 1, opp_overlap 1226372, overlap 1226372 TATTCAATAAAAAAA TAGCGGTCGT-CTTTGCAA AAAA TAACAAAATACGACCGCTT GTCAGTTTATAAAAC TERM 1942 1226408 - 1226372 - R 81 -7.4 -4.54306 | gap 1, opp_overlap 1226372, overlap 1226370 TTCAATAAAAAAATA GCGGTCGT-CTTTGCAA AAAA TAACAAAATACGACCGC TTGTCAGTTTATAAA aspA 1227863 - 1226436 - | aspartate ammonia-lyase TERM 1943 1227938 - 1227953 + r 73 -6.2 -4.4009 | opp_overlap 1227938 TTGTATAAAAAGAAA TGTGAT TTAG ATCACA TTTTATAGACTGCGA TERM 1944 1227953 - 1227938 - R 80 -6.2 -4.96501 | opp_overlap 1227938 TTGTATAAAAAGAAA TGTGAT TTAG ATCACA TTTTATAGACTGCGA APJL_1108 1228285 - 1228004 - | hypothetical protein TERM 1945 1228308 - 1228334 + r 81 -11.6 -2.71593 | opp_overlap 1228309, overlap 1228305 AACTCCTAGAAAAAA ACCGCTTGTAGT ATA GCTACAAGCGGC TCGATTTCTGAATGT TERM 1946 1228333 - 1228309 - R 100 -14.4 -5.61596 | opp_overlap 1228308 1228305 ACTCCTAGAAAAAAA CCGCTTGTAG TATAG CTACAAGCGG CTCGATTTCTGAATG purM 1229396 - 1228359 - | phosphoribosylaminoimidazole synthetase TERM 1947 1230422 - 1230449 + G 72 -6.3 -4.28049 | gap 1, opp_overlap 1230422 1230421 GACGTGAAATAAGAG CCGATTTGCCCG AACTG CTGGCAAA-CGG TTTTAAGGTTTTAAA dspB 1229611 - 1230744 + | N-acetyl-beta-hexosaminidase TERM 1948 1230822 - 1230784 - f 73 -8.9 -3.29263 | opp_overlap 1230784 ATAGCCTCTCGACAA GCGGTCTCTTTTTGCAA AAAAA TTGCAAATTCAGACCGC TTATTCTTTCGTGGT TERM 1949 1230784 - 1230822 + F 81 -8.9 -4.13206 | opp_overlap 1230784 ATAGCCTCTCGACAA GCGGTCTCTTTTTGCAA AAAAA TTGCAAATTCAGACCGC TTATTCTTTCGTGGT queC 1230892 - 1231560 + | queuosine biosynthesis protein QueC TERM 1950 1231920 - 1231907 - g 70 -3.7 -4.7657 | opp_overlap 1231908, overlap 1231908 GAAAAACTGGAAAAA GCCGG TTTA CCGGT CAGTTTAATTCGCCT APJL_1112 1231553 - 1231975 + | 6-pyruvoyltetrahydrobiopterin synthase APJL_1113 1232068 - 1232700 + | organic radical activating enzyme TERM 1951 1232740 - 1232716 - T 78 -9.4 -3.64103 | gap 1, opp_overlap 1232716 TATTCATATGGTAAA GGCATC-GAAG ATTT CTTCCGATGCC TTTTTTGTTTTTAGG TERM 1952 1232716 - 1232740 + T 100 -9.4 -5.93252 | gap 1, opp_overlap 1232716 TATTCATATGGTAAA GGCATC-GAAG ATTT CTTCCGATGCC TTTTTTGTTTTTAGG TERM 1953 1232829 - 1232800 - T 80 -11.1 -3.13908 | opp_overlap 1232802, overlap 1232792 AAGTTAATCACTTAA TATTCTTATTTTT TACC AAAAATAAGAATA TATAAATAGAACTAA TERM 1954 1232802 - 1232827 + T 73 -9.3 -2.91383 | opp_overlap 1232800 1232792 GTTAATCACTTAATA TTCTTATTTTT TACC AAAAATAAGAA TATATAAATAGAACT APJL_1114 1233398 - 1232841 - | hypothetical protein APJL_1115 1233723 - 1233454 - | hypothetical protein TERM 1955 1233765 - 1233796 + r 70 -8.3 -3.3549 | opp_overlap 1233782, overlap 1233763 ATAAAAATCACTATG CTGTTAATAAAAT CAGATA ATTTTATTAACGG TATTACTCTTTTATA TERM 1956 1234038 - 1234013 - R 100 -10.5 -5.10461 | opp_overlap 1234013 TCTATTGAACAAAAA GCCCTCAAATA TCAC TACCTGAGGGC TTGTAAATTTTTATG pepA 1235566 - 1234067 - | aminopeptidase A/I TERM 1957 1234653 - 1234624 - G 71 -8.7 -3.31792 | gap 1, opp_overlap 1234624 1234623 CCAGCACGCCGATAA CGTTCAGCGGTAAT TTC ATTTCCGCT-AACG CTTTCATCGTACCGT TERM 1958 1235953 - 1235943 - g 78 -4 -5.22312 | ATTGATATGAAAAAA TTAC TCC GTAA CGTTCTTCTCTCCGG TERM 1959 1236311 - 1236280 - g 71 -2.3 -5.23943 | gap 1 CATCAAAAAAACAAA CGGCACC-GTTAAT TACCC ATAAACCGGTTCCG GAGCAATTTATCGGA APJL_1117 1235934 - 1236749 + | hypothetical protein TERM 1960 1236913 - 1236929 + F 81 -11.5 -2.62735 | overlap 1236901 TTTTGTTTGATAGTC GCCGCTG AAT CGGCGGC TAATATGAGAGATAT APJL_1118 1237047 - 1238051 + | permease APJL_1119 1238052 - 1239134 + | permease TERM 1961 1239184 - 1239145 - f 100 -16 -3.97645 | opp_overlap 1239145, overlap 1239165 1239177 1239181 ATTAATACATAACAA GCGGTTAAATTTCTGCAA AATT TTGCAAAAAATTAACCGC TTTACCACGCACGAG TERM 1962 1239145 - 1239184 + F 100 -13.8 -3.53012 | opp_overlap 1239145 1239165 1239177 1239181 ATTAATACATAACAA GCGGTTAAATTTCTGCAA AATT TTGCAAAAAATTAACCGC TTTACCACGCACGAG TERM 1963 1239221 - 1239177 - f 72 -4.1 -5.03747 | opp_overlap 1239145 1239189 1239206, overlap 1239145 1239181 AAATTTTGCAAAAAA TTAACCGCTTTACCACGCACG AGC CGTACGTGGTTATGAGGCTCT TCGAGCCAGCTGAGC TERM 1964 1239217 - 1239181 - f 91 -11.5 -3.93166 | opp_overlap 1239145 1239189 1239206, overlap 1239145 1239177 TTTGCAAAAAATTAA CCGCTTTACCACGCACG AGC CGTACGTGGTTATGAGG CTCTTCGAGCCAGCT TERM 1965 1239189 - 1239209 + F 82 -11.1 -3.33315 | opp_overlap 1239181 1239177, overlap 1239206 AAATTAACCGCTTTA CCACGCACG AGC CGTACGTGG TTATGAGGCTCTTCG TERM 1966 1239540 - 1239530 - g 74 -6.8 -4.25104 | opp_overlap 1239520 GGTTCCGGATTAAAA CCGA TTA TCGG TGCGGATATTTTCGT TERM 1967 1239941 - 1239911 - g 80 -6.2 -4.82901 | opp_overlap 1239911 CCTTTTTCACAAAAA CATCAATTACCG TTAGTTG CGGTAAATGACG TGGTATTCTTGAAAG dnaE 1239341 - 1242817 + | DNA polymerase III subunit alpha TERM 1968 1242898 - 1242935 + T 70 -8.7 -2.94925 | opp_overlap 1242889 1242903, overlap 1242903 ATTATATTTTATACT AAAAAGGGTATTGAT TTTATATC ATCAATACCCTTTTC TATATACTCACCTAT TERM 1969 1242930 - 1242903 - T 100 -8.6 -4.80882 | opp_overlap 1242903 1242898 ATTTTATACTAAAAA GGGTATTGAT TTTATATC ATCAATACCC TTTTCTATATACTCA TERM 1970 1242903 - 1242930 + T 90 -8.6 -4.62984 | opp_overlap 1242903, overlap 1242898 ATTTTATACTAAAAA GGGTATTGAT TTTATATC ATCAATACCC TTTTCTATATACTCA TERM 1971 1243546 - 1243525 - T 81 -4.5 -5.33026 | overlap 1243526 GAACTTAAAGAAAAA CTTTGCGAT CTAA ATCACAAAA ATATATTTATAACTA APJL_1121 1243668 - 1243573 - | hypothetical protein TERM 1972 1243661 - 1243639 - G 100 -8.5 -5.5074 | opp_overlap 1243639 GAATTGAATAAAAAA TACTAGCGG TTTAT CCACTAGTA TTTTCATAAAAAAGA TERM 1973 1243639 - 1243661 + g 72 -6.3 -4.25104 | opp_overlap 1243639 GAATTGAATAAAAAA TACTAGCGG TTTAT CCACTAGTA TTTTCATAAAAAAGA purT1 1244068 - 1243682 - | phosphoribosylglycinamide formyltransferase 2 TERM 1974 1244395 - 1244360 - R 83 -12.2 -2.62265 | opp_overlap 1244360 1244365, overlap 1244365 1244384 ATTCATATACAATAT TGAAAGATTAGCTTAT TTTA ATAAGCTAATCTTTTA TTAGCTATAAATCTC TERM 1975 1244360 - 1244395 + r 100 -14.4 -3.14026 | opp_overlap 1244360 1244365 1244384, overlap 1244365 ATTCATATACAATAT TGAAAGATTAGCTTAT TTTA ATAAGCTAATCTTTTA TTAGCTATAAATCTC TERM 1976 1244365 - 1244390 + r 100 -12.1 -4.70169 | opp_overlap 1244360 1244365 1244384, overlap 1244360 TATACAATATTGAAA GATTAGCTTAT TTTA ATAAGCTAATC TTTTATTAGCTATAA TERM 1977 1244390 - 1244365 - R 93 -12.1 -3.80142 | opp_overlap 1244365 1244360, overlap 1244360 1244384 TATACAATATTGAAA GATTAGCTTAT TTTA ATAAGCTAATC TTTTATTAGCTATAA TERM 1978 1244440 - 1244424 - R 78 -3.7 -5.33405 | opp_overlap 1244423, overlap 1244408 TCCATTAAATAAAAA GGTTTAT TTA ATGAACC AGTATTCTCCTTAAA TERM 1979 1244907 - 1244932 + r 100 -9.3 -4.8543 | overlap 1244886 AATCATAGATTTTAT TATTTTCTAAT CATT ATTAGAAAATA TTTTTATAAAAATTA APJL_1123 1246135 - 1244945 - | hypothetical protein APJL_1124 1246304 - 1246113 - | hypothetical protein TERM 1980 1246945 - 1246923 - R 100 -12.2 -5.73339 | opp_overlap 1246923 ATAAGGATAAAAAAA GAGAGATATT GCT AATATCTCTC TTTATAAAAGGAATT TERM 1981 1246923 - 1246945 + r 93 -12.2 -3.86194 | opp_overlap 1246923 ATAAGGATAAAAAAA GAGAGATATT GCT AATATCTCTC TTTATAAAAGGAATT purT2 1248189 - 1247008 - | phosphoribosylglycinamide formyltransferase 2 TERM 1982 1248234 - 1248285 + r 100 -14.2 -4.70659 | gap 1, opp_overlap 1248241, overlap 1248238 1248241 TTTGCGCAGATTATA TAATAAAGCGGTAAGATTTTGTAAA AAT TTTGCAAAATCTTACCGCTT-GTTC TTTTTAAGTATCGGA TERM 1983 1248238 - 1248282 + r 100 -19.7 -4.46215 | opp_overlap 1248241, overlap 1248234 1248241 CGCAGATTATATAAT AAAGCGGTAAGATTTTGTAAA AAT TTTGCAAAATCTTACCGCTTG TTCTTTTTAAGTATC TERM 1984 1248279 - 1248241 - R 100 -19.2 -4.41716 | opp_overlap 1248241 1248238 1248234 AGATTATATAATAAA GCGGTAAGATTTTGTAAA AAT TTTGCAAAATCTTACCGC TTGTTCTTTTTAAGT TERM 1985 1248241 - 1248279 + r 100 -21.4 -4.32491 | opp_overlap 1248241, overlap 1248238 1248234 AGATTATATAATAAA GCGGTAAGATTTTGTAAA AAT TTTGCAAAATCTTACCGC TTGTTCTTTTTAAGT plsB 1250786 - 1248312 - | glycerol-3-phosphate acyltransferase TERM 1986 1249112 - 1249128 + g 73 -5.8 -4.57569 | opp_overlap 1249112 TCGGTACGATAACAT CGTCGG AATAA CTGACG TTTTTAAACAGCTGC lexA 1250943 - 1251575 + | LexA repressor TERM 1987 1251718 - 1251744 + G 72 -8.1 -3.85909 | opp_overlap 1251717 1251718, overlap 1251719 TACGCTGGGTGAAAT CGCACATCAAT TAAAT ATTGATGTGCC TTTGGATTTGCGTCG TERM 1988 1251719 - 1251743 + G 83 -11.6 -2.91063 | opp_overlap 1251718 1251717, overlap 1251718 ACGCTGGGTGAAATC GCACATCAAT TAAAT ATTGATGTGC CTTTGGATTTGCGTC TERM 1989 1251812 - 1251792 - g 84 -9.7 -3.81027 | overlap 1251810 GGCAATTAATCGAAA CGGCTTTAG GTG CAAAAGCCG GCAGCAAGCCCGAAC TERM 1990 1252035 - 1252046 + G 70 -5.8 -4.37658 | overlap 1252017 TTGCCGAACGCCATA TCGG TCAG CCGA TTTTATGGGCGCCTT mutH 1251635 - 1252315 + | DNA mismatch repair protein APJL_1129 1252401 - 1253132 + | hypothetical protein TERM 1991 1253140 - 1253161 + F 90 -7.3 -5.21709 | overlap 1253157 AAGCGTAATAAATCG GCCTTTGAT GAAA ATCAGGGGC TTTTTTAATGTAAAA nagZ 1253247 - 1254284 + | beta-hexosaminidase trmA1 1254365 - 1255540 + | 23S rRNA methyluridine methyltransferase TERM 1992 1256801 - 1256786 - g 74 -7.6 -3.98173 | TCAAATTCAACCAAA TCGGTT CATT AACCGA AACTTTAGCGGCAAT eno 1255747 - 1257057 + | phosphopyruvate hydratase TERM 1993 1257083 - 1257104 + G 100 -13.1 -5.1286 | opp_overlap 1257083 TTCGTAAGTAATAAA TGCCACAGA AATT TCTGTGGCA TTTTTGTAATTTTTA TERM 1994 1257104 - 1257083 - g 100 -13.1 -4.3255 | opp_overlap 1257083 TTCGTAAGTAATAAA TGCCACAGA AATT TCTGTGGCA TTTTTGTAATTTTTA APJL_1133 1257082 - 1257762 + | hypothetical protein TERM 1995 1258025 - 1258036 + G 86 -5.8 -5.29445 | opp_overlap 1258024 1258025 TGTTGGTCGGAAAAC GGCT ATCA AGCC TTTTTATTGTTAAAC APJL_1134 1257776 - 1258186 + | hypothetical protein TERM 1996 1258191 - 1258243 + T 100 -13.7 -4.18702 | opp_overlap 1258195 1258198, overlap 1258195 GGCTAGGCTAATCAC CAAACAAGCGGTTAAATTTCGCTAA TTT TTAACAAAATTTAACCGCTTGTCCG TTTATTGGCGATTAT TERM 1997 1258239 - 1258195 - T 100 -21.9 -3.84514 | opp_overlap 1258195 1258191, overlap 1258198 AGGCTAATCACCAAA CAAGCGGTTAAATTTCGCTAA TTT TTAACAAAATTTAACCGCTTG TCCGTTTATTGGCGA TERM 1998 1258195 - 1258239 + T 100 -17.5 -2.75825 | opp_overlap 1258195 1258198, overlap 1258191 AGGCTAATCACCAAA CAAGCGGTTAAATTTCGCTAA TTT TTAACAAAATTTAACCGCTTG TCCGTTTATTGGCGA TERM 1999 1258236 - 1258198 - T 100 -17.8 -4.04927 | opp_overlap 1258195 1258191, overlap 1258195 CTAATCACCAAACAA GCGGTTAAATTTCGCTAA TTT TTAACAAAATTTAACCGC TTGTCCGTTTATTGG recQ 1260053 - 1258245 - | ATP-dependent DNA helicase TERM 2000 1259086 - 1259098 + g 72 -6.2 -4.2704 | GGTAAATCATCACGT CCGG CACGC CCGG TTTCTTGATAGTAGG TERM 2001 1260133 - 1260090 - R 90 -12.6 -3.11522 | opp_overlap 1260093, overlap 1260085 1260093 TAAAAAAAGACTAGA CAAGCGGTCAAATTTGCAAA ATAT TTTGCAAAAGCGACCGCTTA TTGATTAAAAACTGA TERM 2002 1260130 - 1260093 - R 93 -12.1 -3.65046 | opp_overlap 1260093, overlap 1260090 1260085 AAAAAGACTAGACAA GCGGTCAAATTTGCAAA ATAT TTTGCAAAAGCGACCGC TTATTGATTAAAAAC TERM 2003 1260093 - 1260130 + r 84 -9.9 -3.81146 | opp_overlap 1260090 1260085 1260093 AAAAAGACTAGACAA GCGGTCAAATTTGCAAA ATAT TTTGCAAAAGCGACCGC TTATTGATTAAAAAC cyaY 1260443 - 1260138 - | frataxin-like protein TERM 2004 1260455 - 1260465 + r 70 -2.6 -5.10033 | overlap 1260453 TCATAAGGTCCTCTA TTTA AAA TAAA TTTTCTTTCTCTTAA lpsA1 1260922 - 1260452 - | lipooligosaccharide biosynthesis protein lpsA2 1261228 - 1260926 - | lipooligosaccharide biosynthesis protein TERM 2005 1261154 - 1261131 - G 100 -8.2 -4.98672 | TCGAAAAACACAAAA GGAATATGCT GTTT AGCAAATTCC GACATCATATGATTT gcp 1262312 - 1261269 - | O-sialoglycoprotein endopeptidase TERM 2006 1261343 - 1261353 + g 71 -3.2 -5.03314 | opp_overlap 1261340 TGATGCTTAAATCGC TGGT TTC ACCG TTTTTTAAGCGTAAA TERM 2007 1262366 - 1262341 - R 95 -12.7 -3.73107 | TTATGAAATGGGAAA GGGGCATTATT CAAA AATAACGCCCC TAAAATTGCAAAACT APJL_1140 1263180 - 1262404 - | putative lipoprotein TERM 2008 1262436 - 1262446 + g 84 -5.4 -5.28414 | ATTCAGGCTTAATCG CTTC AGG GAAG TTTTTATCTTTATTC TERM 2009 1263372 - 1263355 - g 76 -9.8 -3.37018 | opp_overlap 1263354 1263353 AACAAATGACATTAA CGGCGG AAGTCA CCGCCG ACTTATTAGGCTGTC TERM 2010 1263937 - 1263918 - g 72 -7.8 -3.74693 | overlap 1263919 CGCCATCCGACCAAA CGCACCGC AATG GCGGTACA CCCGATGGGTAAGCC rluD 1263333 - 1264310 + | 23S rRNA pseudouridine synthase D TERM 2011 1264319 - 1264344 + T 100 -11.2 -5.61881 | opp_overlap 1264319 1264314 TTATTAATGAGAAAA GTCCGTAGCC TTAAAC GGTTACGGAC TTTTTATTTTTACGG TERM 2012 1264344 - 1264319 - T 90 -9 -4.56607 | opp_overlap 1264319, overlap 1264314 TTATTAATGAGAAAA GTCCGTAGCC TTAAAC GGTTACGGAC TTTTTATTTTTACGG APJL_1142 1265067 - 1264354 - | hypothetical protein TERM 2013 1264986 - 1264964 - G 70 -2.6 -5.01042 | opp_overlap 1264968, overlap 1264968 1264978 AACGCAAACCAAAAA TGAAGCGGAC TAA ATCCGCTTTT AAAACCGGCATATAA TERM 2014 1264982 - 1264968 - G 72 -7.8 -3.90592 | opp_overlap 1264968, overlap 1264964 1264978 CAAACCAAAAATGAA GCGGAC TAA ATCCGC TTTTAAAACCGGCAT TERM 2015 1264968 - 1264982 + g 73 -7.1 -4.07687 | opp_overlap 1264968 1264964 1264978 CAAACCAAAAATGAA GCGGA CTAAA TCCGC TTTTAAAACCGGCAT TERM 2016 1265109 - 1265091 - R 100 -13.2 -5.2853 | opp_overlap 1265088 1265087 TACCTAAAAACAAAA GGCGACTA ACA TAGTCGCC TCGGTATTCTAAGGA pfkA 1266102 - 1265128 - | 6-phosphofructokinase TERM 2017 1265370 - 1265382 + g 73 -9.1 -3.45088 | overlap 1265362 1265366 1265373 TTGCGCGCGTTTCAT GACCG AAG CGGTC TTCGATTTCTTTTGC TERM 2018 1265738 - 1265756 + g 74 -10.4 -2.66272 | opp_overlap 1265741, overlap 1265734 1265741 ATACCGATACACGGA TAACCGAA TTC TTCGGTTA TAAGTTTCGCTCCCA nifS 1267414 - 1266212 - | cysteine desulfurase TERM 2019 1266742 - 1266729 - G 70 -8.1 -3.63744 | overlap 1266727 TTTCCGGTTAAAACA CCGAC ACCG GTCGG GCCATACATTTTATG APJL_1145 1268112 - 1267414 - | putative endonuclease precursor TERM 2020 1267557 - 1267584 + g 73 -8.4 -3.66658 | opp_overlap 1267557 1267556 1267560, overlap 1267560 ACACTTTATGACAAT CTACCGCTTTCT CTTT AGCAAGCGGTCG TGTTTTAGCCCTATT TERM 2021 1268145 - 1268126 - R 100 -7.9 -5.8901 | opp_overlap 1268126 ATACAAAATAAAAAA GTGTAGG TATTAC CCTACAC TTTAACAGATTTTCA APJL_1146 1269545 - 1268178 - | Na+/alanine symporter TERM 2022 1269926 - 1269937 + r 81 -4.4 -5.33848 | opp_overlap 1269906 AAAACATATTTTTAA GCAA ACGT TTGC TTTTTTGCTTATAGT TERM 2023 1269973 - 1270001 + r 76 -5.9 -4.70879 | opp_overlap 1269973 CAATCCAATAAAAAA GCGACCGCTGTTA TGA TATTGGCGATCGC TTTTTCACCTTTAAC TERM 2024 1270001 - 1269973 - R 81 -3.7 -5.5074 | opp_overlap 1269973 CAATCCAATAAAAAA GCGACCGCTGTTA TGA TATTGGCGATCGC TTTTTCACCTTTAAC APJL_1147 1271064 - 1270012 - | hypothetical protein TERM 2025 1270380 - 1270370 - G 75 -3.2 -5.18357 | TAATTCAGTAAAAAA GCAA GTG TCGC CCAAAGCACCGCATA TERM 2026 1271149 - 1271128 - R 100 -13.1 -4.56367 | CATTGCATAAACAAA GAGGCGATT ATTC AATCGCCTC TCCCATGATTACTTA cytB562 1271532 - 1271158 - | soluble cytochrome b562 APJL_1149 1271681 - 1273078 + | putative protease TERM 2027 1273198 - 1273215 + F 100 -8.4 -5.61913 | opp_overlap 1273195 CCATAATAAATTTCA CCCCTC AGGAAC GAGGGG TTTTTTATGTTTATT APJL_1150 1273222 - 1274571 + | hypothetical protein TERM 2028 1274723 - 1274711 - g 82 -10.5 -3.61764 | opp_overlap 1274710 1274709, overlap 1274704 TCATGAATTGGCAAA GCCCG TAG CGGGC GGTATTATCGTGCAT waaA 1274571 - 1275851 + | 3-deoxy-D-manno-octulosonic-acid transferase coaD 1275853 - 1276329 + | phosphopantetheine adenylyltransferase APJL_1153 1276332 - 1276886 + | oligoribonuclease TERM 2029 1276949 - 1276932 - g 70 -5.6 -4.25104 | opp_overlap 1276937, overlap 1276937 TTTTCCCGATGAAAA CCGAAT GTTGCA ATTCGG GCAACAATTTGCCAA TERM 2030 1276997 - 1277008 + G 70 -5.8 -4.32678 | TTGAACAAGATTCCG CGCA TTGT TGCG TTATTTATTTAAACG APJL_1154 1276894 - 1277385 + | ATP-binding protein TERM 2031 1278382 - 1278372 - g 70 -5.4 -4.4267 | GGCGAAAAGTTAAAA GAAG AAT CTTC ATCTAAACGCCCGGA amiB 1277409 - 1278554 + | N-acetylmuramoyl-L-alanine amidase TERM 2032 1278603 - 1278562 - T 100 -18.4 -4.87389 | opp_overlap 1278562 TACGGTAAAAATAAA TAGCGGTCATTTTTACAA AATAAA TTGCAAAAATGACCGCTA TTGCTTGGTATTAAA TERM 2033 1278562 - 1278603 + T 100 -16.2 -3.45768 | opp_overlap 1278562 TACGGTAAAAATAAA TAGCGGTCATTTTTACAA AATAAA TTGCAAAAATGACCGCTA TTGCTTGGTATTAAA pgi 1280273 - 1278633 - | glucose-6-phosphate isomerase TERM 2034 1279998 - 1279980 - G 86 -11.8 -3.11955 | opp_overlap 1279977 1279995, overlap 1279994 AGAACGATTACGTAA TGCGGTAT GCA ATACCGCA CGATTCTCCGTACGA APJL_1157 1280561 - 1280310 - | hypothetical protein TERM 2035 1280638 - 1280624 - R 74 -4.4 -4.96468 | opp_overlap 1280624 GAAAGCTAAAGAAAA TAATAA GGA TTATTA TGTATAAATCAAAAA TERM 2036 1280783 - 1280769 - R 95 -4.3 -6.09196 | opp_overlap 1280769 CCCAAAAGAAAAAAA CTAAC CTAAC GTTAG CTTATTCGGTGTGAT aroE 1282069 - 1281245 - | shikimate 5-dehydrogenase APJL_1159 1282630 - 1282076 - | hypothetical protein TERM 2037 1282343 - 1282389 + g 70 -8.1 -3.5936 | gap 1, opp_overlap 1282342 CAAATATTGAGGAAC CGCCTTTTTAGCGGGC-ATTAC CCAA GTAATCGCTCGTTCCGAAGGCG TTTCAAAAATTTGCC TERM 2038 1282569 - 1282554 - G 78 -9 -3.82083 | GGATTACAACCTAAA CCGAAG ACCG CTTCGG TAGGATAAGCAACCA APJL_1160 1283156 - 1282623 - | DNA topoisomerase I-related protein APJL_1161 1283473 - 1283153 - | hypothetical protein recX 1283925 - 1283524 - | regulatory protein RecX-like protein TERM 2039 1283607 - 1283595 - G 82 -7.7 -4.56597 | GTTTTTTCTCAAAAA CTTGC TCG GCAAG TATAAACCAATCAAT TERM 2040 1283975 - 1283942 - R 100 -13.3 -5.51046 | opp_overlap 1283945, overlap 1283945 TAAATATATAAAAAA CAATGCGGTTTCTAC CTTC GCAGAAACCGCATTT CTATTATAGTTCTTC TERM 2041 1283945 - 1283972 + r 95 -12.8 -4.30911 | opp_overlap 1283945 1283942 ATATATAAAAAACAA TGCGGTTTCTAC CTTC GCAGAAACCGCA TTTCTATTATAGTTC TERM 2042 1283972 - 1283945 - R 100 -15 -4.78477 | opp_overlap 1283945, overlap 1283942 ATATATAAAAAACAA TGCGGTTTCTAC CTTC GCAGAAACCGCA TTTCTATTATAGTTC recA 1285109 - 1283979 - | recombinase A TERM 2043 1284026 - 1284061 + g 78 -4 -5.09173 | gap 1 CAAAGTCATTCACAT CATCGGCATCTAGCACA TTT TGTTC-ACCTGCCGATG TTTTTTCCGGTGTTG TERM 2044 1285154 - 1285142 - R 76 -4.8 -5.00884 | opp_overlap 1285142 ACTTTTCTGAAAAAA CGAC CGCTT GTCG TCAATTAACTGTGTA APJL_1164 1285828 - 1285223 - | hypothetical protein pabB 1286774 - 1285806 - | para-aminobenzoate synthase component I TERM 2045 1286733 - 1286718 - G 70 -2.6 -4.97312 | overlap 1286724 AAAATCAATTAAAAA GAAAAA CGGG CTTTTC TGTTGCCCGAGTTGA TERM 2046 1286742 - 1286724 - G 91 -4.5 -5.67529 | overlap 1286718 AATTAAAAAGAAAAA CGGGC TTTTCTGTT GCCCG AGTTGATTGGCGGTT TERM 2047 1287327 - 1287316 - g 73 -5.8 -4.46267 | ACAATTTAATCAAAA TGCG CTTT CGCA TAAAGAACGTGAAAG TERM 2048 1287756 - 1287738 - g 71 -3.1 -4.91987 | AAGGTAACAATAAAA TCGCC GGTAATTGG GGCGA AGTACAGCTTGAATC rmuC 1286909 - 1288543 + | DNA recombination protein RmuC-like protein trpG 1288527 - 1289126 + | para-aminobenzoate synthase component II APJL_1168 1289198 - 1289647 + | periplasmic protein TERM 2049 1289661 - 1289715 + F 78 -5.5 -4.98522 | gap 2, opp_overlap 1289668 1289687, overlap 1289665 1289668 AACTTTTCCAATTAA TAAATA-AGCGGTC-ATTTTTTAGTAA ATT TTGTTACAAAATCGACCGCTTTATTTG TTTTTATCTCCAATT TERM 2050 1289665 - 1289711 + F 72 -4.1 -5.01422 | gap 2, opp_overlap 1289668 1289687, overlap 1289661 1289668 TTTCCAATTAATAAA TA-AGCGGTC-ATTTTTTAGTAA ATT TTGTTACAAAATCGACCGCTTTA TTTGTTTTTATCTCC TERM 2051 1289668 - 1289707 + F 85 -7.4 -4.96845 | gap 1, opp_overlap 1289668 1289687, overlap 1289665 1289661 CCAATTAATAAATAA GCGGTC-ATTTTTTAGTAA ATT TTGTTACAAAATCGACCGC TTTATTTGTTTTTAT TERM 2052 1290004 - 1289980 - g 100 -12.3 -3.57406 | opp_overlap 1289978, overlap 1289978 1289981 CTTTGACGAGAAAGA CGAAGCGATTT TCA AAATCGCTTCA AGCCTACGTTCGGAA TERM 2053 1290003 - 1289981 - g 93 -13.6 -2.74122 | opp_overlap 1289978, overlap 1289980 1289978 TTTGACGAGAAAGAC GAAGCGATTT TCA AAATCGCTTC AAGCCTACGTTCGGA aspS 1289819 - 1291594 + | aspartyl-tRNA synthetase TERM 2054 1292057 - 1292083 + G 82 -8 -4.57569 | opp_overlap 1292053 1292058, overlap 1292058 1292059 ATTGCAAAATATTTA ACTCCCCTCTTT AGA AAAGAGGGGAAC TTTTTCAAAACATAA TERM 2055 1292082 - 1292058 - g 100 -13.7 -3.28785 | opp_overlap 1292058 1292057 1292059, overlap 1292053 TTGCAAAATATTTAA CTCCCCTCTTT AGA AAAGAGGGGAA CTTTTTCAAAACATA TERM 2056 1292058 - 1292082 + G 86 -11.5 -3.3422 | opp_overlap 1292053 1292058, overlap 1292057 1292059 TTGCAAAATATTTAA CTCCCCTCTTT AGA AAAGAGGGGAA CTTTTTCAAAACATA TERM 2057 1292059 - 1292081 + G 100 -15 -2.60211 | opp_overlap 1292058 1292053, overlap 1292058 1292057 TGCAAAATATTTAAC TCCCCTCTTT AGA AAAGAGGGGA ACTTTTTCAAAACAT mutT2 1291694 - 1292098 + | dATP pyrophosphohydrolase APJL_1171 1292122 - 1292862 + | hypothetical protein TERM 2058 1292874 - 1292897 + F 100 -14 -4.77759 | CTAATTTCTTTCCCT TAAGCCAACC TTTC GGTTGGCTTA TTTTTAGTAACTTAT TERM 2059 1293141 - 1293157 + G 78 -9.4 -3.60627 | opp_overlap 1293130, overlap 1293132 AAAAGACGGTGCTTC CGCCGT ATCTA ACGGCG TTTCAAATACGGTGA APJL_1172 1292995 - 1293519 + | hypothetical protein TERM 2060 1293538 - 1293581 + F 100 -20.6 -4.4959 | opp_overlap 1293541 ATTGATTCGTTTAGA TAAGCGGGCGGATTTGTAAA ATTT TTTGCAAATCTGCCCGCTTG TTTTCATTCATTGGA TERM 2061 1293578 - 1293541 - f 100 -15.7 -3.48593 | opp_overlap 1293538 GATTCGTTTAGATAA GCGGGCGGATTTGTAAA ATTT TTTGCAAATCTGCCCGC TTGTTTTCATTCATT TERM 2062 1294115 - 1294104 - g 78 -5.8 -4.76041 | overlap 1294093 CAGAGCGACCAAAAA GTCG GTAG CGAC AAAGAACAAATCCTC ruvC 1293579 - 1294181 + | Holliday junction resolvase TERM 2063 1294189 - 1294212 + T 84 -11.2 -3.63627 | opp_overlap 1294189 AAGGGTAAAAATAAA GAGTAATCAA TCGC TTGATTACTC TTTCCGCTCTAAGGA TERM 2064 1294212 - 1294189 - T 100 -11.2 -4.88293 | opp_overlap 1294189 AAGGGTAAAAATAAA GAGTAATCAA TCGC TTGATTACTC TTTCCGCTCTAAGGA TERM 2065 1294235 - 1294258 + T 84 -5.2 -5.39755 | gap 1 TCTAAGGATTTTTTT CGGTAGCCGGC TGA GTCG-CTTCCG TTTTTTCTACTTCTG APJL_1174 1295735 - 1294221 - | putative zinc protease TERM 2066 1295815 - 1295860 + r 100 -15 -4.386 | opp_overlap 1295810 TAACAAATAATTGTC GCAAGCGGTCTAATTTGC CTATTTTTTT GCAAATTAAACCGCTTGC TTTTATGAAAAATTA metE 1298166 - 1295893 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 2067 1298368 - 1298325 - R 100 -17.1 -5.72616 | opp_overlap 1298328 ATCTATATAAAAAAA CAAGCGGTCAAATTTGCAT TTTTTT ATACAAATTTGACCGCTTA AATCATTTATCACAT TERM 2068 1298328 - 1298365 + r 100 -14.4 -3.17798 | opp_overlap 1298325 TATATAAAAAAACAA GCGGTCAAATTTGCAT TTTTTT ATACAAATTTGACCGC TTAAATCATTTATCA citT 1299719 - 1298397 - | di- and tricarboxylate transporter TERM 2069 1299660 - 1299642 - G 74 -9.6 -3.27476 | ACCGCTAATCACTAA TGCGACTA AAG TAGCCGCA CCCATAGGCATTGCT lysR2 1300082 - 1301011 + | transcriptional regulator TERM 2070 1301067 - 1301030 - T 100 -12.3 -4.78029 | gap 1, opp_overlap 1301030, overlap 1301064 TGAATAAAATTAAAA GCGGTAGAATTTGT-TAA AAT TTATACAAAATCTACCGC TTTGCGTATTAAATC TERM 2071 1301030 - 1301067 + T 93 -12.3 -3.77087 | gap 1, opp_overlap 1301030 1301064 TGAATAAAATTAAAA GCGGTAGAATTTGT-TAA AAT TTATACAAAATCTACCGC TTTGCGTATTAAATC APJL_1178 1302225 - 1301089 - | hypothetical protein TERM 2072 1302182 - 1302152 - G 72 -7.6 -3.76169 | TTAATATCAATAGAA TGGTTCTTACTGCC ACA AGCGGTAATAACCA ATCCGGCTAATAAAG TERM 2073 1302342 - 1302322 - R 100 -8.4 -5.56264 | opp_overlap 1302322 TGTAAAGATAAAAAA GCCAATAT TTCTC ATATTGGC TTATCTAGGTTTGTT TERM 2074 1302322 - 1302342 + r 72 -8.4 -3.59471 | opp_overlap 1302322 TGTAAAGATAAAAAA GCCAATAT TTCTC ATATTGGC TTATCTAGGTTTGTT APJL_1179 1303407 - 1302358 - | pseudouridine synthase TERM 2075 1303366 - 1303384 + g 100 -11.8 -5.64421 | opp_overlap 1303365 1303364 ATTTTTAGAAAATTT TGCCGATT TCG AATCGGCA TTTTTTGTTTGAAAT TERM 2076 1303422 - 1303435 + r 70 -8.1 -3.37755 | overlap 1303420 TTAAGATTCCTTTGT CGCTC TCAC GAGCG TCTTTAAAAATATAT APJL_1180 1304096 - 1303479 - | putative translation factor TERM 2077 1304142 - 1304120 - R 100 -10 -5.40474 | opp_overlap 1304120 ATCCTTCGAAAAAAA TGTTGATGTA TTA TACACCAACA TTCTTATATTCTCTA TERM 2078 1304120 - 1304142 + r 76 -7.8 -4.02093 | opp_overlap 1304120 ATCCTTCGAAAAAAA TGTTGATGTA TTA TACACCAACA TTCTTATATTCTCTA APJL_1181 1304525 - 1304295 - | hypothetical protein APJL_1182 1305537 - 1304641 - | iron-dependent peroxidase TERM 2079 1306081 - 1306105 + G 71 -4.9 -4.59773 | overlap 1306073 1306083 ACCAGCACCGTGTTT GACGGTTTACG TTG TGTGAGCCGAC TTTTTGCCGATAAAG TERM 2080 1307059 - 1307044 - g 80 -4.6 -5.16841 | opp_overlap 1307055 1307055, overlap 1307046 GTAGAGCAACAAAAA CGCCAC AGTT ACGGCG GTGCTGTCGGTTACT trpE 1305709 - 1307259 + | anthranilate synthase component I pabA 1307273 - 1307860 + | anthranilate synthase component II trpD 1307917 - 1308921 + | anthranilate phosphoribosyltransferase TERM 2081 1308928 - 1308943 + F 100 -10.4 -5.252 | opp_overlap 1308926 TACCAGTAACATATC GCCCAC ATTT GTGGGC TTTTTTATAGGAATA TERM 2082 1309487 - 1309471 - g 70 -3.7 -4.88129 | AAAAATGAGCAAAAA CAACAAG TTG CTTATCG TTTAAATTTCTATCG APJL_1186 1308964 - 1309719 + | SAM-dependent methyltransferase TERM 2083 1309739 - 1309716 - T 100 -10.4 -5.81412 | opp_overlap 1309720 GGCAGTTAAAAAAAA TTAAGCAGCC AATC GACTGCTTAA TACTCCTTATGAAAG APJL_1187 1310831 - 1309746 - | hypothetical protein APJL_1188 1311027 - 1311242 + | hypothetical protein TERM 2084 1311287 - 1311308 + T 100 -13.1 -3.79445 | opp_overlap 1311287 TAATATATAAAAAAA TACCCAGCT AAAA AGCTGGGTA TTTCAGTTAATCATT TERM 2085 1311308 - 1311287 - T 100 -13.1 -5.80248 | opp_overlap 1311287 TAATATATAAAAAAA TACCCAGCT AAAA AGCTGGGTA TTTCAGTTAATCATT rplI 1311780 - 1311331 - | 50S ribosomal protein L9 rpsR 1312025 - 1311798 - | 30S ribosomal protein S18 priB 1312374 - 1312000 - | primosomal replication protein N rpsF 1312723 - 1312349 - | 30S ribosomal protein S6 TERM 2086 1312975 - 1312986 + H 71 -4.4 -4.87052 | TTCTAGTACAATTAC GCAA ACGT TTGC TTTTATTAATTTATA TERM 2087 1313161 - 1313146 - g 74 -4.6 -4.88711 | opp_overlap 1313159, overlap 1313147 AGAAGATATCAAAAA TGTGGC GATA GCCGCA ACCGATGTTCCCGCA purD 1313012 - 1314298 + | phosphoribosylamine--glycine ligase TERM 2088 1314371 - 1314326 - T 100 -13.5 -5.27779 | opp_overlap 1314327, overlap 1314327 GCTAACAGCAAAAAA TCAAGCGGTCTAATTGGTAAA ATAT TTTGCAAATTAGACCGCTTGT TATTTGTTGATAAAA TERM 2089 1314370 - 1314327 - T 100 -17 -3.75583 | opp_overlap 1314327, overlap 1314326 CTAACAGCAAAAAAT CAAGCGGTCTAATTGGTAAA ATAT TTTGCAAATTAGACCGCTTG TTATTTGTTGATAAA TERM 2090 1314327 - 1314370 + T 100 -19.2 -4.24413 | opp_overlap 1314327 1314326 CTAACAGCAAAAAAT CAAGCGGTCTAATTGGTAAA ATAT TTTGCAAATTAGACCGCTTG TTATTTGTTGATAAA APJL_1194 1315082 - 1314390 - | nicotinamide mononucleotide transporter TERM 2091 1315203 - 1315182 - R 100 -10.9 -5.90231 | opp_overlap 1315182 ATAAATATAAAAAAA TAGGGCTGC ACAA ACAGCCCTA TTTCGATTATAGATT TERM 2092 1315182 - 1315203 + r 84 -10.2 -3.81741 | opp_overlap 1315182 ATAAATATAAAAAAA TAGGGCTG CACAAA CAGCCCTA TTTCGATTATAGATT APJL_1195 1315833 - 1315210 - | hypothetical protein hisS 1317090 - 1315849 - | histidyl-tRNA synthetase APJL_1197 1317233 - 1317141 - | hypothetical protein ispG 1318360 - 1317248 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 2093 1317281 - 1317300 + g 78 -5.8 -4.87893 | gap 1, overlap 1317277 1317275 AATTCGATTGTGTTG TTCG-GCAA CTC TTGCTCGAA TTTTTGCTTCCAGTT TERM 2094 1317501 - 1317489 - G 70 -7.7 -3.58731 | opp_overlap 1317488 1317489 AAAATATCTTCCAAA CGTTG TTC CAACG CATTTACCGTAGCAA TERM 2095 1318293 - 1318276 - G 73 -8.4 -3.65902 | overlap 1318277 TCGACTGCACCGAAA TCGGCG CATCGC CGCCGA CTGCGACATTCCCCA TERM 2096 1318289 - 1318277 - G 75 -10.5 -2.79327 | overlap 1318276 CGACTGCACCGAAAT CGGCG CAT CGCCG CCGACTGCGACATTC APJL_1199 1319338 - 1318370 - | hypothetical protein APJL_1200 1319618 - 1321174 + | integral membrane sulfate transportor TERM 2097 1321249 - 1321295 + T 100 -18.3 -3.22951 | opp_overlap 1321250, overlap 1321250 1321253 GTAGGCTACAAATAA ACAAGCGGTCTGATTTTGCAA ATTTC TTACAAAATCAGACCGCTTGA TCTTATCCAAATCTC TERM 2098 1321250 - 1321294 + T 100 -21.8 -2.53449 | opp_overlap 1321250, overlap 1321249 1321253 TAGGCTACAAATAAA CAAGCGGTCTGATTTTGCAA ATTTC TTACAAAATCAGACCGCTTG ATCTTATCCAAATCT TERM 2099 1321294 - 1321250 - T 100 -24.7 -4.56367 | opp_overlap 1321250 1321249 1321253 TAGGCTACAAATAAA CAAGCGGTCTGATTTTGCAAA TTT CTTACAAAATCAGACCGCTTG ATCTTATCCAAATCT TERM 2100 1321253 - 1321291 + T 100 -17.7 -3.41745 | opp_overlap 1321250, overlap 1321250 1321249 GCTACAAATAAACAA GCGGTCTGATTTTGCAA ATTTC TTACAAAATCAGACCGC TTGATCTTATCCAAA TERM 2101 1321398 - 1321376 - T 86 -8.4 -4.53225 | AGTAAAAAAATTAAA GGCACTCGTC AAA GACTAGTACC ATCACAAAGTGTTCT TERM 2102 1321476 - 1321458 - T 74 -10.2 -2.73364 | opp_overlap 1321437 1321441 GGCTGATCGTAACCA CGTACGGC TTT GCCGTGCG TGGTAAAACTAAGCC argH 1322861 - 1321485 - | argininosuccinate lyase TERM 2103 1322261 - 1322251 - G 73 -8.2 -3.68569 | CGATCGATTGAATAA GCCG TAC CGGC TAATGCGCCTGAACC TERM 2104 1322970 - 1322985 + r 84 -4.6 -5.49809 | ATTATCTATTGCAAG CGGTGA AATT TCCCCG TTTTTTTGCAATTTG TERM 2105 1323122 - 1323085 - R 100 -14.3 -5.13722 | opp_overlap 1323085 TTTAGCAAAACAAAA GCGGTCGAATCTGCAAA ATTT TTTGCAAATCCCACCGC TTGTCATCTCAAATT TERM 2106 1323085 - 1323122 + r 80 -9.9 -3.47345 | opp_overlap 1323085 TTTAGCAAAACAAAA GCGGTCGAATCTGCAAA ATTT TTTGCAAATCCCACCGC TTGTCATCTCAAATT APJL_1202 1324182 - 1323142 - | putative oxidoreductase TERM 2107 1325619 - 1325607 - g 70 -2.7 -5.00616 | CTCGTTTGCAAAAAA TTGAC GAA ATCAA ACCGCATGATCATAT kefBC 1324433 - 1326238 + | glutathione-regulated potassium-efflux system protein TERM 2108 1326289 - 1326258 - f 76 -9.5 -3.37028 | opp_overlap 1326258 AGGAATACTCTACAA GCGGTCGTAAATC GTCAAA AATTTACGGCCGC TTATTTCGATGAGGG TERM 2109 1326258 - 1326289 + F 89 -11 -3.96216 | opp_overlap 1326258 AGGAATACTCTACAA GCGGTCGTAAAT CGTCAAAA ATTTACGGCCGC TTATTTCGATGAGGG TERM 2110 1326452 - 1326488 + F 74 -7.7 -3.97602 | gap 1, opp_overlap 1326460, overlap 1326460 AACTTTTGGTAATTT CTTA-AAAAGTTTCAA TCGTAC TTGAAACTTTTTTAAG TTTGTAGATATATTG TERM 2111 1326460 - 1326479 + F 79 -5.1 -5.24449 | opp_overlap 1326460, overlap 1326452 GTAATTTCTTAAAAA GTTTCAA TCGTAC TTGAAAC TTTTTTAAGTTTGTA TERM 2112 1326479 - 1326460 - f 71 -5.1 -4.59853 | opp_overlap 1326460 1326452 GTAATTTCTTAAAAA GTTTCAA TCGTAC TTGAAAC TTTTTTAAGTTTGTA APJL_1204 1326591 - 1326815 + | hypothetical protein TERM 2113 1327425 - 1327441 + G 73 -5.2 -4.71776 | opp_overlap 1327411 1327417 1327425, overlap 1327420 ATTCAAATCAAAAAA TGATTC AAACA GAATCA TTTTCTTAAATATTC TERM 2114 1327441 - 1327425 - g 84 -5.2 -5.38497 | opp_overlap 1327425 1327420, overlap 1327411 1327417 ATTCAAATCAAAAAA TGATTC AAACA GAATCA TTTTCTTAAATATTC APJL_1205 1326832 - 1327929 + | hypothetical protein TERM 2115 1327942 - 1327971 + T 73 -5.9 -4.46615 | gap 1, opp_overlap 1327942, overlap 1327937 TAATGTGTTAAAAAA TACCGTCTGAAATA TTG TA-TTCAGACAGTA TTTTCATTCCTACTA TERM 2116 1327971 - 1327942 - T 95 -8.1 -5.03145 | gap 1, opp_overlap 1327942 1327937 TAATGTGTTAAAAAA TACCGTCTGAAATA TTG TA-TTCAGACAGTA TTTTCATTCCTACTA APJL_1206 1328927 - 1328034 - | putative HTH-type transcriptional regulator TERM 2117 1328089 - 1328074 - G 81 -5.4 -5.14563 | TCTTCCACTAAAAAA TCCACA AAGC TGCGGA CGGTTTTGGGGAGTT TERM 2118 1328602 - 1328590 - G 71 -3.3 -5.00616 | overlap 1328591 TGTTTGGCTAAAAAA GTGCG AAT CGCAT TGAGCAAATGGGTGC APJL_1207 1329051 - 1329503 + | hypothetical protein TERM 2119 1329547 - 1329535 - T 76 -6.3 -4.58283 | CAAGCGGTCGAAAAA CCAAA AAG TTTGG GATAGTGGACAAAAT TERM 2120 1329587 - 1329618 + T 85 -7.4 -4.91473 | opp_overlap 1329587 TTTCCCCATGATATA GCCATAATGGAC ATTTTTGA GTCTGTTATGGC TTTATTTTTAACTTC APJL_1208 1330261 - 1329626 - | hypothetical protein TERM 2121 1330547 - 1330583 + H 100 -16.1 -3.93984 | opp_overlap 1330547, overlap 1330537 TCATTTTTATAAAAA GTGGGTTAAAGCCTTAT AGT ACAAGGTTTTAACCCAC TTTGTGACTCAATTT TERM 2122 1330583 - 1330547 - H 100 -16.1 -4.84359 | opp_overlap 1330547 1330537 TCATTTTTATAAAAA GTGGGTTAAAGCCTTAT AGT ACAAGGTTTTAACCCAC TTTGTGACTCAATTT yqhC 1330598 - 1331449 + | putative HTH-type transcriptional regulator nahR 1332407 - 1331508 - | HTH-type transcriptional activator TERM 2123 1332604 - 1332644 + H 79 -7.1 -4.4715 | opp_overlap 1332599 1332587 CGGCAACAGACGGTG TGCCAAT-ATTCGGCAACA GACGG TGT-GCCGAACGATTGGCA TTTTGTGCATTACAC APJL_1211 1332628 - 1333584 + | NADPH dehydrogenase (xenobioticreductase) TERM 2124 1333630 - 1333600 - f 95 -12.8 -3.50447 | opp_overlap 1333600 TTAACGTCTATACAA GCGGTGTAAAAA GAAGCAT TTTTTACACCGC TTTTTCTTATTTATC TERM 2125 1333600 - 1333630 + F 100 -13.5 -5.42164 | opp_overlap 1333600 TTAACGTCTATACAA GCGGTGTAAAAAG AAGCA TTTTTTACACCGC TTTTTCTTATTTATC TERM 2126 1334676 - 1334656 - g 100 -8.3 -5.15167 | opp_overlap 1334659 TACGATGAACAAAAA CAAGCGAAA TCT TATCGCTTG TTAAAAGAAATCGTA APJL_1212 1333654 - 1334703 + | putative oxidoreductase TERM 2127 1334743 - 1334712 - T 100 -15.4 -5.10767 | gap 1, opp_overlap 1334712 TATGTAATATAAAAA GCGGTCGTAAATTCT TAA AGA-TTTACGACCGC TTGTTTATGCGAATC TERM 2128 1334712 - 1334743 + T 100 -15.4 -4.07133 | gap 1, opp_overlap 1334712 TATGTAATATAAAAA GCGGTCGTAAATTCT TAA AGA-TTTACGACCGC TTGTTTATGCGAATC APJL_1213 1335631 - 1334762 - | 3-hydroxyisobutyrate dehydrogenase TERM 2129 1334893 - 1334921 + g 81 -11.2 -3.36694 | gap 1, overlap 1334892 CTTTTTCCAGTTCTC CGCAAGC-AAGAT TAAG ATCTTTGCTTGCG TGTTTGAGCATAAAT nfnB 1335942 - 1336595 + | putative NAD(P)H nitroreductase TERM 2130 1336621 - 1336648 + F 89 -7.8 -4.99435 | opp_overlap 1336621 CTTTGATACATTAAA CGGTATGAGATC CTCT GATTTCATAGCG TTTTTACTTATTACC marC 1336758 - 1337375 + | MarC family integral membrane protein APJL_1216 1337406 - 1338017 + | hypothetical protein TERM 2131 1338078 - 1338020 - T 100 -15 -4.56736 | opp_overlap 1338030 1338049 ATTTAATAACTAAAA TCACAAACAAGCGGTCAAAATTTGCAAA TTT TTTGTAAAATTTAACCGCTTACTTGTAA TCAGTATTCTTCTTA TERM 2132 1338030 - 1338068 + T 84 -11.2 -3.4759 | opp_overlap 1338020, overlap 1338049 TAAAATCACAAACAA GCGGTCAAAATTTGCAAA TTT TTTGTAAAATTTAACCGC TTACTTGTAATCAGT APJL_1217 1338948 - 1338091 - | putative esterase APJL_1218 1339757 - 1338963 - | putative GST-like protein TERM 2133 1339884 - 1339916 + r 84 -11.5 -3.15249 | opp_overlap 1339889, overlap 1339889 GTATAGGACGGAGAT AAAAATAGGCAGAGT TTC ATTCTGCCTATTTTG TTGGTGGAAAATGTG TERM 2134 1339889 - 1339911 + r 95 -11.4 -4.71426 | opp_overlap 1339889, overlap 1339884 GGACGGAGATAAAAA TAGGCAGAGT TTC ATTCTGCCTA TTTTGTTGGTGGAAA TERM 2135 1339911 - 1339889 - R 100 -9.2 -4.99035 | opp_overlap 1339889 1339884 GGACGGAGATAAAAA TAGGCAGAGT TTC ATTCTGCCTA TTTTGTTGGTGGAAA pilT 1340352 - 1339933 - | PilT domain-containing protein APJL_1220 1340619 - 1340362 - | antitoxin of toxin-antitoxin stability system TERM 2136 1340551 - 1340566 + g 79 -8.2 -4.24002 | opp_overlap 1340544 GGTGATAATTACAGG GGCGGT AAGT GCCGCC TTTTGAGCTTTGCCA TERM 2137 1340755 - 1340742 - R 100 -9.5 -5.32396 | opp_overlap 1340742 ATAGGAAAAACAAAA GGGGC TTAC GCCCC TTATTTAATGAAATT TERM 2138 1340742 - 1340755 + r 85 -9.5 -4.01158 | opp_overlap 1340742 ATAGGAAAAACAAAA GGGGC TTAC GCCCC TTATTTAATGAAATT adh1 1341887 - 1340769 - | putative alcohol dehydrogenase class III APJL_1222 1344069 - 1342042 - | choline-glycine betaine transporter TERM 2139 1343917 - 1343902 - G 77 -4.7 -4.91977 | GACTAAAATATAAAA CCAAC TGAAAT GTTGG AAAATTGTCGCTTTT TERM 2140 1344208 - 1344235 + H 74 -5 -4.7416 | opp_overlap 1344204, overlap 1344204 1344230 TAAAACCAATATACC TTAGCATAAGAT ATCA ATTTTATGCAAA TTTTTAGCATTTTAA TERM 2141 1344517 - 1344500 - g 74 -4.9 -4.77986 | opp_overlap 1344500 GGAAATACTGAAAAA TCCTCAA TATC TTGAAGA TCTCTGGCAACTTTA APJL_1223 1344366 - 1345076 + | hypothetical protein TERM 2142 1345683 - 1345673 - g 71 -8.2 -3.54424 | overlap 1345657 1345681 CCGCATTGGTGGAAA GCGG AAA CCGC TCAACAACGACACGA APJL_1224 1345076 - 1345912 + | hypothetical protein tehA 1346938 - 1345991 - | potassium-tellurite ethidium and proflavin transporter TERM 2143 1346519 - 1346499 - G 77 -6.1 -4.71426 | TTGGCACTAACAAAA TTCGCCGCC ACC AACGGCAAA TAAAGTACCGGTGTG TERM 2144 1347027 - 1346981 - R 100 -16.9 -4.29326 | gap 1, opp_overlap 1346977 TTCAAACCGAATAAA TG-CGCAAACGGTCGTAAATTT TGCC AGATTTACGACCGCTTGCGACA AAATGTAAATTAAAG APJL_1226 1347687 - 1347037 - | hypothetical protein TERM 2145 1347792 - 1347805 + r 70 -3.1 -5.00616 | ACGATCAAAAAGCGG TCTGA TTTA TCGGA TTTTTTGCAAAAAAA TERM 2146 1347841 - 1347821 - R 89 -6.2 -5.40072 | TTTTTTGCAAAAAAA TACCTTGC GATAT ACAAGGTA TAAAATAAACAGAAT TERM 2147 1347869 - 1347882 + r 80 -2.4 -5.72118 | overlap 1347860 AATCCGGCAGATTAT TGCT TCATAC AGCA TTTTTTGTATTTTTT APJL_1227 1348488 - 1347925 - | flavin reductase domain-containing protein TERM 2148 1348571 - 1348528 - R 100 -11.2 -4.99947 | opp_overlap 1348531, overlap 1348531 TCTAAGTAAATAAAA CAAGCGGTCAGATTTACAAA ATTT TCTACAAATCCGACCGCTTT CGATTAATGAATATC TERM 2149 1348568 - 1348531 - R 100 -12.9 -4.57791 | opp_overlap 1348531, overlap 1348528 AAGTAAATAAAACAA GCGGTCAGATTTACAAA ATTT TCTACAAATCCGACCGC TTTCGATTAATGAAT APJL_1228 1350419 - 1348575 - | ABC transporter, putative ATP-binding protein TERM 2150 1350343 - 1350330 - G 91 -8.1 -4.85782 | opp_overlap 1350329 1350330 CGCTTCAAAAATAAA CGGGA TTAT TCCCG ATTTGGGCGTTTTCG TERM 2151 1350464 - 1350438 - R 74 -4.4 -5.00884 | overlap 1350444 ACTTTCCTGAAAAAA CTAAAAGACGCC ATA AGCGTCTGTCAA AGGTTAAAATATATT TERM 2152 1350458 - 1350444 - R 88 -7.8 -4.86862 | overlap 1350438 CTGAAAAAACTAAAA GACGCC ATA AGCGTC TGTCAAAGGTTAAAA TERM 2153 1350513 - 1350494 - R 95 -7.2 -5.29445 | opp_overlap 1350494 1350496 1350512 TTTTAAGAAGAAAAA GACGTAAT AAAC ATTACGCC TTTTTGAAGGATTAT TERM 2154 1350494 - 1350513 + r 71 -5 -4.60255 | opp_overlap 1350494, overlap 1350496 1350512 TTTTAAGAAGAAAAA GACGTAAT AAAC ATTACGCC TTTTTGAAGGATTAT luxS 1351034 - 1350525 - | S-ribosylhomocysteinase TERM 2155 1351078 - 1351060 - R 80 -8.9 -3.94333 | opp_overlap 1351059 AATTTAAAACTTAAA GGGGTAA GGTGA TTACCCC ATATCTGAAATTATT APJL_1230 1353617 - 1351089 - | hypothetical protein TERM 2156 1351969 - 1351990 + g 73 -5.8 -4.431 | opp_overlap 1351956, overlap 1351957 AGCTCGGCAGACACC GCCGGTTC AATCCA GAAACGGC TTTTATCACTGAGTA TERM 2157 1352213 - 1352223 + g 71 -4.6 -4.74103 | opp_overlap 1352213 CAACATCTTTATAAA GCGG ATA CTGC TTTTTCGCTTCGCCC TERM 2158 1353293 - 1353308 + g 72 -7.5 -3.94877 | opp_overlap 1353281, overlap 1353281 AATCGCCGTCGGTTA CCGCC ACTGTC GGCGG TTCTTCTTCCGCAAT TERM 2159 1353868 - 1353846 - R 100 -10.6 -4.76963 | opp_overlap 1353844 1353846 TTAGATAACACAAAA CCGAAGGCCT GCA AAACCTTCGG TATATGTCTGCTTTA fur 1354352 - 1353903 - | ferric uptake regulation protein fldA 1354905 - 1354381 - | flavodoxin FldA APJL_1233 1355220 - 1354927 - | LexA regulated protein TERM 2160 1355418 - 1355402 - R 77 -2.9 -5.4588 | TAAAATTACAAAAAA CGGTAAA AAT TCGACCG CTTATTCCTCCTTAA APJL_1234 1355896 - 1355420 - | hypothetical protein TERM 2161 1355659 - 1355677 + g 75 -7.4 -4.27584 | CCACTTTTTTCACGC CGAGCG CACTTGC CGCTCG TTTTAAATTCAAGGT TERM 2162 1356567 - 1356557 - g 74 -6.8 -4.25104 | opp_overlap 1356557 TCCGTTTGATGAAAA TGCG GAG CGCA TCGCATTTGATACCG APJL_1235 1355988 - 1356989 + | aspartate-semialdehyde dehydrogenase TERM 2163 1356999 - 1357024 + F 100 -11.2 -4.8743 | TATTAACTTTATCCG CTGCGGAACG TAAAAT CGTTCCGTAG TTTCTTTCTTTTACC APJL_1236 1357050 - 1358345 + | xanthine/uracil family permease APJL_1237 1358455 - 1358805 + | putative uncharacterized protein involved inoxidation of intracellular sulfur TERM 2164 1358836 - 1358848 + G 77 -6.2 -4.64861 | overlap 1358831 TCGTGATCATCGGTG CCGG CGCAT CCGG TTTATTTTGCGCCGC TERM 2165 1359941 - 1359958 + G 76 -6.9 -4.48987 | overlap 1359955 1359956 CGGCTATAATTTCCA GTGGGCG TGGT CGTCCGC TTTTGCTTGTGCGGA APJL_1238 1358805 - 1359992 + | flavoprotein TERM 2166 1360010 - 1360063 + T 100 -12.7 -4.42238 | opp_overlap 1360025, overlap 1360011 1360025 TTGATGATTGCTGCT ACCCAAAACAAAAAACGGAAGCTGA TTTC TCAACTTCCGTTTTTTGTTTTAAGC TTTTAATTAACGTGC TERM 2167 1360011 - 1360062 + T 100 -16.2 -3.2486 | opp_overlap 1360025, overlap 1360010 1360025 TGATGATTGCTGCTA CCCAAAACAAAAAACGGAAGCTGA TTTC TCAACTTCCGTTTTTTGTTTTAAG CTTTTAATTAACGTG TERM 2168 1360048 - 1360025 - T 100 -11.8 -5.80951 | opp_overlap 1360011 1360010 1360025 ACCCAAAACAAAAAA CGGAAGCTGA TTTC TCAACTTCCG TTTTTTGTTTTAAGC TERM 2169 1360025 - 1360048 + T 100 -9.6 -5.79595 | opp_overlap 1360025, overlap 1360011 1360010 ACCCAAAACAAAAAA CGGAAGCTGA TTTC TCAACTTCCG TTTTTTGTTTTAAGC infA 1360288 - 1360070 - | translation initiation factor IF-1 TERM 2170 1360189 - 1360205 + g 74 -6.5 -4.5442 | TACCTGAAATATGTG CGGTAAC AAC GTGACCG TTTTCTAATTCCACA aphA 1361042 - 1360380 - | AphA (smp-like) protein TERM 2171 1360995 - 1361012 + g 70 -2.6 -4.93177 | overlap 1360997 GCATAACACGCTAAT TCCGGC GAGCAA GCCGAA TTTTATTAATTTTTC TERM 2172 1361478 - 1361457 - g 71 -10.1 -2.72344 | gap 1, opp_overlap 1361456 TTGTATCGGCAATTA CCGCCAGCGC AAT GCGC-GGCGA ATTGGATTTCGAGCA serB 1361135 - 1362004 + | phosphoserine phosphatase TERM 2173 1362001 - 1362030 + F 75 -7.3 -4.21194 | gap 1, opp_overlap 1362001 1362004 CTATGTATCATCCAA CTA-GGCTAATGCA AAC TGTGTTAGCCGTAG TTTTCAATAATGAGG APJL_1242 1362054 - 1362545 + | nucleotide-binding protein APJL_1243 1362594 - 1362791 + | hypothetical protein TERM 2174 1362805 - 1362833 + F 100 -10.4 -5.8187 | gap 1, opp_overlap 1362805 AGTCCTACTAATAAA TCCTCCCTGACTA ATTT TAG-CGGGGAGGA TTTTTTTATTCAGTG TERM 2175 1362833 - 1362805 - f 81 -8.2 -4.2461 | gap 1, opp_overlap 1362805 AGTCCTACTAATAAA TCCTCCCTGACTA ATTT TAG-CGGGGAGGA TTTTTTTATTCAGTG glgP 1362899 - 1365298 + | glucan phosphorylase TERM 2176 1365324 - 1365308 - T 100 -13.7 -4.76191 | opp_overlap 1365308 AGATAGCAAAACAAA CGTGGGC AAT GCCCACG TTTTTTCTTTCTTCT TERM 2177 1365308 - 1365324 + T 100 -13.7 -5.82036 | opp_overlap 1365308 AGATAGCAAAACAAA CGTGGGC AAT GCCCACG TTTTTTCTTTCTTCT malT 1368093 - 1365376 - | ATP-dependent transcriptional regulator TERM 2178 1367768 - 1367747 - G 71 -6.7 -4.16301 | AACTGAGAGAAATAA TCTACCAAA TTAT TTTGGTAAA CAATTCCGGAAAAAG TERM 2179 1368184 - 1368165 - R 100 -12.2 -5.95539 | GTGGAAATAAAAAAA GCCACTGA CAAT TCAGTGGC AAAAGGATAAAGATA APJL_1246 1369092 - 1368208 - | maltose regulon periplasmic protein TERM 2180 1368300 - 1368310 + g 73 -2.6 -5.2189 | AATTCATTGCTTTAC TAAT ATC ATTA TTTTTTAATGCTTGC TERM 2181 1369152 - 1369132 - R 95 -12.6 -3.91144 | GTTACATCGTATAAA GGGGCGTA ATACA TACGCCCC AAATGGCTCAATTAC APJL_1247 1370456 - 1369164 - | maltoporin TERM 2182 1370519 - 1370503 - R 75 -9.5 -3.18024 | overlap 1370502 TTTCATTATTAAAAT TTAAGGG AAA CCCTTAA GAACATTTATACGCC malK 1371665 - 1370526 - | maltose/maltodextrin transporter ATP-binding protein TERM 2183 1371693 - 1371707 + H 81 -7.2 -4.64992 | TCGCTTTAAATTTGT TACGTA GTT TACGTA TTTCTCTTTTTTCCA TERM 2184 1371798 - 1371832 + H 87 -11.6 -3.53224 | opp_overlap 1371798, overlap 1371785 TATTTTTTTGTGAAA CGGATCACAAAAAACA TCC TCTATTTTGTGATCCG TTTCACAAAAACATC TERM 2185 1371832 - 1371798 - H 87 -11.6 -3.53224 | opp_overlap 1371785 1371798 TATTTTTTTGTGAAA CGGATCACAAAAAACA TCC TCTATTTTGTGATCCG TTTCACAAAAACATC malE 1371996 - 1373180 + | maltose ABC transporter periplasmic protein TERM 2186 1374240 - 1374251 + G 78 -7.2 -4.55849 | TTAATTTTACCTTAC GCCG TACC CGGC TTTATTTCGATTTTA malF 1373259 - 1374809 + | maltose transporter membrane protein malG 1374860 - 1375750 + | maltose transporter permease TERM 2187 1375753 - 1375771 + F 78 -9.6 -3.53811 | opp_overlap 1375753 1375751 CGTAAAAGGATAACA TTGGAGGA GCC TCCTCCGA TTTGCAAAAAATAAA malQ 1375841 - 1377859 + | 4-alpha-glucanotransferase TERM 2188 1377891 - 1377857 - f 84 -7.5 -4.71307 | gap 2, opp_overlap 1377865 1377888, overlap 1377861 1377865 CAAAAACGAAATAAA TAAGGATATAGCCACAA AGA TTGTGGCTAT-TC-TTA TAAATTATAAGTTAT TERM 2189 1377888 - 1377861 - f 80 -10.8 -3.21394 | gap 1, opp_overlap 1377865, overlap 1377857 1377865 AACGAAATAAATAAG GATATAGCCACAA AGA TTGTGGCTAT-TC TTATAAATTATAAGT TERM 2190 1377885 - 1377865 - f 88 -12.7 -3.11207 | opp_overlap 1377865, overlap 1377861 1377857 AAATAAATAAGGATA TAGCCACAA AGA TTGTGGCTA TTCTTATAAATTATA TERM 2191 1377865 - 1377885 + F 95 -12.7 -3.85879 | opp_overlap 1377865 1377861 1377857 AAATAAATAAGGATA TAGCCACAA AGA TTGTGGCTA TTCTTATAAATTATA TERM 2192 1378031 - 1378020 - f 71 -7.2 -4.00084 | opp_overlap 1378019 1378020 ATTACTAAAATACAA CGCC TTTT GGCG ATTTGTGATTTCCAA TERM 2193 1378183 - 1378173 - g 75 -3.2 -5.10029 | ATTAACCCCAAAAAA GCAA CAC CTGC TTATACAATGAATGA APJL_1253 1378077 - 1379663 + | carbon starvation protein, membrane protein TERM 2194 1379702 - 1379684 - f 100 -13.2 -4.28651 | opp_overlap 1379684 ATTAAAACGTTAAAA GCGAGGAA AAT TTCCTCGC TTTTTTATTTTTAAC TERM 2195 1379684 - 1379702 + F 100 -13.2 -5.93252 | opp_overlap 1379684 ATTAAAACGTTAAAA GCGAGGAA AAT TTCCTCGC TTTTTTATTTTTAAC APJL_1254 1379729 - 1380523 + | putative deoxyribonuclease TERM 2196 1380552 - 1380521 - T 100 -14 -3.86346 | opp_overlap 1380528, overlap 1380528 TTATTTTGGTATAAA TAAAAAACGGATAC CTTA GTATCCGTTTTTCA AATTAAAATCGCTTG TERM 2197 1380545 - 1380528 - T 100 -9.9 -5.72622 | opp_overlap 1380528, overlap 1380521 GGTATAAATAAAAAA CGGATAC CTTA GTATCCG TTTTTCAAATTAAAA TERM 2198 1380528 - 1380545 + T 91 -9.9 -4.66833 | opp_overlap 1380528 1380521 GGTATAAATAAAAAA CGGATAC CTTA GTATCCG TTTTTCAAATTAAAA lpd 1381955 - 1380585 - | glutathione reductase TERM 2199 1380896 - 1380880 - G 78 -10.1 -3.53012 | TGCGGTTCGGTTAAA CCGACCG TAC CGATCGG CGGATGGCTAAAGAT TERM 2200 1382010 - 1381982 - R 73 -6.1 -4.41158 | opp_overlap 1381987, overlap 1381987 TACATAAATAAAGAA TAAAAGCGGTT CAATTCT AACCGCTTTTG GTAAAAATGCATTAA TERM 2201 1382005 - 1381987 - R 83 -6 -5.10765 | opp_overlap 1381987, overlap 1381982 AAATAAAGAATAAAA GCGGTT CAATTCT AACCGC TTTTGGTAAAAATGC APJL_1256 1382559 - 1382041 - | hypothetical protein TERM 2202 1382134 - 1382144 + g 81 -5.4 -5.14965 | opp_overlap 1382130, overlap 1382130 GTGGATAATCACCTG CCAT TGC ATGG TTTTTTCATCCAAAT TERM 2203 1382377 - 1382395 + g 82 -8.2 -4.30978 | opp_overlap 1382379 GTCAATTAAGTTTAA CACCGTTA GCA TAATGGTG TTTTCATCCATTACG TERM 2204 1382640 - 1382591 - R 86 -6.7 -5.2112 | gap 1, opp_overlap 1382591 1382609 AATAGCACTAAAAAA GCGGTCTAATTT-TAGCAACTTTT TGC AAAAGTTTTAAGAAATCAGACCGC TTGTTTAACAAATAT APJL_1257 1383299 - 1382661 - | putative NAD(P)H nitroreductase TERM 2205 1383461 - 1383408 - R 100 -12.7 -4.63527 | opp_overlap 1383416, overlap 1383413 1383416 GCACTAGTTCAAAAA TACAACAAGCGGTTAAATTCGCTAA AAAA TTTGCAAATTTAACCGCTTGCTCAA CTAAAAGATTGCTCG TERM 2206 1383456 - 1383413 - R 100 -19.2 -4.08349 | opp_overlap 1383416, overlap 1383408 1383416 AGTTCAAAAATACAA CAAGCGGTTAAATTCGCTAA AAAA TTTGCAAATTTAACCGCTTG CTCAACTAAAAGATT TERM 2207 1383453 - 1383416 - R 100 -15.1 -4.14576 | opp_overlap 1383416, overlap 1383413 1383408 TCAAAAATACAACAA GCGGTTAAATTCGCTAA AAAA TTTGCAAATTTAACCGC TTGCTCAACTAAAAG TERM 2208 1383416 - 1383453 + r 90 -12.9 -3.16564 | opp_overlap 1383416 1383413 1383408 TCAAAAATACAACAA GCGGTTAAATTCGCTAA AAAA TTTGCAAATTTAACCGC TTGCTCAACTAAAAG APJL_1258 1383755 - 1383462 - | hypothetical protein APJL_1259 1384414 - 1383755 - | AzlC family protein TERM 2209 1384203 - 1384224 + g 71 -8.7 -3.25539 | opp_overlap 1384200, overlap 1384201 TACAGTGACAACGCT GCCCCCATA ATTA TATGGCGGC TGTTAATTAACATTG TERM 2210 1384417 - 1384404 - G 70 -3.8 -4.84642 | CCTAAAGGAATAAAA CCGA ACATCA TCGG GGATACTTCTTTGAT sapF 1385288 - 1384488 - | peptide transport system ATP-binding protein TERM 2211 1385248 - 1385232 - G 70 -7.9 -3.73953 | overlap 1385221 1385234 ATCATGCTTACGAAA CAGACCG ATC CGGTCGG TAAAATGTTTATTCA TERM 2212 1385246 - 1385234 - G 73 -9.1 -3.45324 | overlap 1385232 CATGCTTACGAAACA GACCG ATC CGGTC GGTAAAATGTTTATT TERM 2213 1385380 - 1385351 - R 83 -12.3 -2.58677 | opp_overlap 1385357, overlap 1385357 TATACAATTATCAAC GAAAAAGACCGCT AACA AGCGGTCTTTTTT ACTAAAGTTTTTACA TERM 2214 1385374 - 1385357 - R 100 -11.3 -4.90869 | opp_overlap 1385357, overlap 1385351 ATTATCAACGAAAAA GACCGCT AACA AGCGGTC TTTTTTACTAAAGTT TERM 2215 1385357 - 1385374 + r 100 -11.3 -5.16237 | opp_overlap 1385357 1385351 ATTATCAACGAAAAA GACCGCT AACA AGCGGTC TTTTTTACTAAAGTT fba 1386480 - 1385404 - | fructose-bisphosphate aldolase TERM 2216 1386539 - 1386505 - R 71 -8.6 -3.18452 | opp_overlap 1386502 1386513, overlap 1386525 CCTTTAAATAAATGA TTCAGTAGGGGCGTAT TAC ATACGCCCTTAATGGA GAGTTTTAGGACGTA TERM 2217 1386513 - 1386531 + r 95 -13.2 -3.16323 | opp_overlap 1386505 1386525, overlap 1386502 TAAATGATTCAGTAG GGGCGTAT TAC ATACGCCC TTAATGGAGAGTTTT pgk 1387756 - 1386581 - | phosphoglycerate kinase TERM 2218 1386831 - 1386846 + g 73 -5.4 -4.64657 | AATACACCGACCGGA CCGTTC CAAA GAATGG TTTTTGCCGATTTGA TERM 2219 1387898 - 1387911 + r 79 -8.1 -4.07885 | opp_overlap 1387897 1387898 TAAACCGCCCAAAAC GCTCC AAAT GGAGC TTTTACCACCACGTC APJL_1263 1389302 - 1387914 - | hypothetical protein TERM 2220 1388086 - 1388071 - G 71 -4.6 -4.66938 | ATCGGCAACATAAAA GCGGCA GACG CACCGC AAGCGATAATCGCCG TERM 2221 1388120 - 1388096 - G 100 -12.9 -3.42354 | overlap 1388111 CACCGCAAGCGATAA TCGCCGCCAAT GAA ATCGGCGGCAA GCCAAGTGAATTGGC TERM 2222 1388168 - 1388150 - G 79 -3 -5.30616 | overlap 1388151 CGACGGAAATAAAAA TCGGCATC ATC AACGCCGC ACTAGCCGTATTAGA TERM 2223 1389508 - 1389459 - R 100 -8.9 -5.31519 | gap 1, opp_overlap 1389459 ATAGTGAAAGAAAAA GCGGTTAAATTTCC-GAAAAACCT TGC AAGTTCTTATGAAAATTCAACCGC TTATTTAATCTGTTA APJL_1264 1390809 - 1389535 - | di- and tricarboxylate transporter TERM 2224 1390308 - 1390298 - G 82 -3.2 -5.50499 | GCATATTCAAAAAAA CCGA ATT TCAG ACCGGTTTGCGCTAA TERM 2225 1391024 - 1391054 + r 91 -6.3 -5.66338 | gap 1, opp_overlap 1391024 TTACAAACAAAAAAA GGTGCATTTTGTTA GTTC TAACAAAC-GCACC TTTTTTATTCTATTT TERM 2226 1391054 - 1391024 - R 100 -8.5 -6.02919 | gap 1, opp_overlap 1391024 TTACAAACAAAAAAA GGTGCATTTTGTTA GTTC TAACAAA-CGCACC TTTTTTATTCTATTT APJL_1265 1392505 - 1391114 - | di- and tricarboxylate transporter TERM 2227 1392624 - 1392588 - R 100 -9.7 -4.90296 | AAAATGTTATAAAAA TGTGAACTTCTTCAAAA AAT TTTTAACGAAATTCACA TAAATACAAGCGGTC TERM 2228 1392686 - 1392631 - R 75 -8.6 -3.64364 | gap 1, opp_overlap 1392630 1392634, overlap 1392629 1392634 AAATTCACATAAATA CAAGCGGTCGTTTTTCAGCATATTTTT GCA AAAAATCTAA-AAAAACCGACCGCTTG AATATTCTATCAAAT parE 1394614 - 1392701 - | DNA topoisomerase IV subunit B TERM 2229 1393051 - 1393036 - G 77 -8.2 -3.93236 | TATCAATCCGATAAA GCGGCG GCAT CGCCAC ATAAACGTGACCGTT TERM 2230 1393326 - 1393304 - G 72 -9.2 -3.11222 | opp_overlap 1393303 1393302, overlap 1393303 TCGTAACGGCAAAAT CGCTTGATAA TCT TTATCACGCG CCTGTTTCGCCGAAC TERM 2231 1394115 - 1394134 + g 73 -3.6 -5.00884 | gap 1, opp_overlap 1394119, overlap 1394118 1394119 GGGTTAGGATAGAAA CGAA-CGGT CGT ACCGGTTTG TTTTTTCGGACAGCT TERM 2232 1394118 - 1394130 + g 71 -3.3 -5.04249 | opp_overlap 1394119, overlap 1394115 1394119 TTAGGATAGAAACGA ACGGT CGT ACCGG TTTGTTTTTTCGGAC TERM 2233 1394708 - 1394721 + r 74 -3.8 -5.1861 | TAAGGATTTTTTGTT TCGC CGAGCA GCGA TTTTTTGATGATAAA phoR 1395984 - 1394692 - | phosphate regulon sensor protein TERM 2234 1395138 - 1395116 - G 75 -3.4 -5.08824 | opp_overlap 1395103 CTCTGATTTAAAAAA TCCGCATT TTTTTGT AAAGCGGA AATCATCGCCGACAT TERM 2235 1395507 - 1395522 + g 75 -3.4 -5.09173 | overlap 1395484 GCGGTCTGTTTTTCT TATTTT GATG AAAATA TTTTTTAAACTCTTC TERM 2236 1395934 - 1395919 - G 100 -9 -5.10208 | TAAGCCGAATAAAAA TGCCGT CGCA ACGGCA AGCATCGCTTCGATA phoB 1396625 - 1395984 - | phosphate regulon transcriptional regulatory protein TERM 2237 1396780 - 1396731 - R 100 -15.3 -3.28712 | opp_overlap 1396731 1396774, overlap 1396752 1396761 TTTCTGCTCTGATAA GCGGTCGAATTTCACCAAAAATT TGCA AAATTTTAGCAAAATCCGACCGC TTGCGTCGATTCATT TERM 2238 1396770 - 1396752 - R 71 -4.6 -4.74801 | opp_overlap 1396731, overlap 1396731 1396761 GAATTTCACCAAAAA TTTGCAAA ATT TTAGCAAA ATCCGACCGCTTGCG pstB 1397579 - 1396800 - | phosphate transport ATP-binding protein pstA 1398439 - 1397588 - | phosphate transport system permease pstC 1399392 - 1398439 - | phosphate transport system permease protein TERM 2239 1399176 - 1399160 - G 83 -8.7 -4.15669 | overlap 1399170 1399171 AACGCAGAAATCAAA GTACCGA TAA CCGGTAC CAGCGCACCGAAATT TERM 2240 1399522 - 1399478 - R 100 -9.5 -5.38839 | opp_overlap 1399478 CACACAAAAACAAAA GCGGCTGAATCTAAAGTTT ACAAAAA ACACTTCAAATTCAACCGC TTATTTCTTATTTAA pstS 1400584 - 1399541 - | phosphate-binding periplasmic protein precursor APJL_1273 1401092 - 1400706 - | heavy metal-dependent transcriptional regulator APJL_1274 1401178 - 1401630 + | metal-binding protein APJL_1275 1401648 - 1401848 + | cation transport ATPase TERM 2241 1401902 - 1401878 - f 85 -7.1 -4.92385 | overlap 1401879 1401880 GATATTCAAAGAAAA TCCCCCTCTTT AGC AAAGAGGGGTG GGGGAGATTTGGCAG TERM 2242 1401901 - 1401879 - f 82 -10.6 -3.54346 | overlap 1401878 1401880 ATATTCAAAGAAAAT CCCCCTCTTT AGC AAAGAGGGGT GGGGGAGATTTGGCA TERM 2243 1401900 - 1401880 - f 93 -14.1 -2.71523 | overlap 1401879 1401878 TATTCAAAGAAAATC CCCCTCTTT AGC AAAGAGGGG TGGGGGAGATTTGGC TERM 2244 1402062 - 1402049 - f 72 -3.8 -5.0432 | AACAAAAATATAAAA CCAC CATTCC GTGG TTAAACTTACCGGAA copA 1402087 - 1404237 + | copper-transporting P-type ATPase TERM 2245 1404312 - 1404273 - T 72 -7.9 -3.80855 | opp_overlap 1404272 1404273 1404274, overlap 1404269 1404274 1404276 TTCTGCAAAAACTAA CCACGGAATACACGGAA ATATTA TTCGGTGTAATCCGTGT ATTCCATGGTTTTAT TERM 2246 1404273 - 1404321 + T 82 -7.6 -4.50583 | gap 1, opp_overlap 1404273 1404269 1404274 1404276, overlap 1404272 1404274 TTCTGCAAAAACTAA CCACGGAATACACGGA-AATATT ATTC GGTGTAATCCGTGTATTCCATGG TTTTATAATGCTATT TERM 2247 1404274 - 1404311 + T 84 -11.4 -3.15124 | opp_overlap 1404274 1404273 1404269 1404276, overlap 1404272 1404273 TCTGCAAAAACTAAC CACGGAATACACGGAA ATATTA TTCGGTGTAATCCGTG TATTCCATGGTTTTA TERM 2248 1404311 - 1404274 - T 82 -11.4 -2.88031 | opp_overlap 1404272 1404273 1404274, overlap 1404273 1404269 1404276 TCTGCAAAAACTAAC CACGGAATACACGGAA ATATTA TTCGGTGTAATCCGTG TATTCCATGGTTTTA APJL_1277 1405156 - 1404335 - | putative oxidoreductase APJL_1278 1405747 - 1405184 - | nitroreductase TERM 2249 1405488 - 1405523 + g 82 -3.2 -5.53991 | gap 1, opp_overlap 1405475 1405474, overlap 1405462 1405489 ATGCCGATCACCATC GGCG-CTTGGCCGGAAA GTT TTTCCGCCTTAGCCGCA TTTTTTTCGTCCATA TERM 2250 1406289 - 1406276 - g 77 -3.7 -5.1848 | opp_overlap 1406277, overlap 1406277 1406286 AACGAATTTAAAAAA TCGGG TAAA CCCGT CATTGCCGTCGGCGA sppA 1405862 - 1407718 + | protease IV, signal peptide peptidase TERM 2251 1407776 - 1407718 - f 77 -8.3 -3.84183 | gap 1, opp_overlap 1407726 1407729, overlap 1407729 CGGTACGATAAAATA GCATGTTACAAGCGGTCGGATTTGCAAA TTTT TTCGCAAATCCGACCGCTTATTTTTT-C TTCCCTCACCTCTCT TERM 2252 1407726 - 1407769 + F 100 -19.8 -5.4833 | opp_overlap 1407718 1407729, overlap 1407729 TAAAATAGCATGTTA CAAGCGGTCGGATTTGCAAA TTTT TTCGCAAATCCGACCGCTTA TTTTTTCTTCCCTCA TERM 2253 1407766 - 1407729 - f 100 -23.7 -3.34787 | opp_overlap 1407726 1407729, overlap 1407718 AATAGCATGTTACAA GCGGTCGGATTTGCAAA TTTT TTCGCAAATCCGACCGC TTATTTTTTCTTCCC TERM 2254 1407729 - 1407766 + F 100 -21.5 -4.81306 | opp_overlap 1407729 1407718, overlap 1407726 AATAGCATGTTACAA GCGGTCGGATTTGCAAA TTTT TTCGCAAATCCGACCGC TTATTTTTTCTTCCC APJL_1280 1407877 - 1408620 + | ribonuclease precursor TERM 2255 1408771 - 1408727 - g 100 -13 -4.65916 | gap 1, opp_overlap 1408736 GTTATTTCAATAAAA CTTTTACACCGCCGACGGTCA GTTA TG-CCGTACGCGGCGTAAAAG CCGGTGTCGCTTATC sprT 1408651 - 1409142 + | hypothetical protein ndh 1409247 - 1410533 + | NADH dehydrogenase TERM 2256 1410636 - 1410579 - T 91 -11.4 -3.93166 | opp_overlap 1410579, overlap 1410543 TTTGCAAAAAATTAA CCACGGAATACACAGATTACTCGGAA ATTTTA TTCGGTGTAATTAGTGTGTTCCGTGG TTTTATTTAAGCTAT TERM 2257 1410579 - 1410636 + T 100 -15.8 -4.89521 | opp_overlap 1410543 1410579 TTTGCAAAAAATTAA CCACGGAATACACAGATTACTCGGAA ATTTTA TTCGGTGTAATTAGTGTGTTCCGTGG TTTTATTTAAGCTAT APJL_1283 1413062 - 1410723 - | transcriptional accessory protein TERM 2258 1411275 - 1411306 + g 74 -4.4 -5.00616 | gap 1, opp_overlap 1411275 TGCATTGCCCATTAA TTCGGCAAGAG-TCG AGT CGGTCGCTTGCAGAA TTTTTTCCACCACCG pilF 1413685 - 1413137 - | putative fimbrial biogenesis and twitching motility protein PilF-like protein TERM 2259 1413731 - 1413706 - R 70 -9 -3.09273 | TCTCCTCAAGATATA CTCCCCTCAC TTAGTT GCGAAGGGAG AAATTAGTTAATGGT APJL_1285 1414920 - 1413739 - | hypothetical protein TERM 2260 1415800 - 1415789 - H 72 -3.6 -5.00616 | CTTTTGTTTAAAAAA GCCA ATCA CGGC AAATCATTTAATAGG TERM 2261 1416589 - 1416578 - g 70 -7.2 -3.78018 | CAAAAATTATCGAAA CGCC ACGG GGCG GTAAGCGTAATGCAA gltX 1415825 - 1417264 + | glutamyl-tRNA synthetase TERM 2262 1417284 - 1417308 + F 81 -8.6 -4.10657 | CTATTGACAGTTACA GTGGCTACAT TTATT ATGTCGCCAC TTTTCGGGGATATAG TERM 2263 1417451 - 1417427 - f 74 -9.3 -3.07307 | opp_overlap 1417427 TAAACGTCTACGCAA GCCTTATAGCA CAA CGCTTTAAGGC TTTTTTATTATCTCT TERM 2264 1417427 - 1417451 + F 100 -8.6 -5.62045 | opp_overlap 1417427 TAAACGTCTACGCAA GCCTTATAGC ACAAC GCTTTAAGGC TTTTTTATTATCTCT APJL_1287 1417602 - 1417853 + | antitoxin YefM yoeB 1417850 - 1418110 + | toxin YoeB TERM 2265 1418119 - 1418142 + T 100 -8.2 -5.45652 | opp_overlap 1418119 TCAGTAATTTAAAAC GCCTTATTCA GAAA TGGATAGGGC TTTTTTATTACCAAT APJL_1289 1418435 - 1418268 - | hypothetical protein lpxK 1419417 - 1418437 - | tetraacyldisaccharide 4'-kinase TERM 2266 1418708 - 1418692 - G 87 -6.5 -5.2422 | AAGCATATTAAAAAA TCGGGGA GGA TGCCCGA TTCCGGCAATCGCCA TERM 2267 1418923 - 1418909 - G 71 -2.1 -5.10933 | overlap 1418910 GCAGGCAAAACAAAA CCGTT ACCAA AACGA CGTATGCCATCAACC TERM 2268 1419476 - 1419498 + r 89 -10.7 -4.12902 | opp_overlap 1419476 TACAGATAAAACAAA TGGACAATG AAGAA CATTGTCCA TTTTAGCGATGCTTA TERM 2269 1419498 - 1419476 - R 100 -10.7 -4.85653 | opp_overlap 1419476 TACAGATAAAACAAA TGGACAATG AAGAA CATTGTCCA TTTTAGCGATGCTTA clpX 1420647 - 1419511 - | ATP-dependent protease ATP-binding subunit clpP 1421360 - 1420770 - | ATP-dependent Clp protease proteolytic subunit sufE 1421484 - 1421876 + | hypothetical protein TERM 2270 1421922 - 1421903 - T 100 -12.2 -5.50313 | opp_overlap 1421903 TATAAAACGAAAAAA GCCTCTGA TTTC TCAGAGGC TTTTTCTTGAAAAAG TERM 2271 1421903 - 1421922 + T 100 -12.2 -5.06414 | opp_overlap 1421903 TATAAAACGAAAAAA GCCTCTGA TTTC TCAGAGGC TTTTTCTTGAAAAAG dnaQ 1423008 - 1422235 - | DNA polymerase III epsilon chain TERM 2272 1423087 - 1423029 - R 74 -8.5 -3.8125 | gap 1, opp_overlap 1423034, overlap 1423034 TGCCTAATCAAAAGA TGCAAGCGGTCGAATTTCAAGGAAAATT TGCA AATTTTCACTAAAATCCGACCGCTTAT- TCACGTATTACTTCG TERM 2273 1423034 - 1423083 + r 88 -10.9 -3.68302 | opp_overlap 1423034 1423029 AATCAAAAGATGCAA GCGGTCGAATTTCAAGGAAAATT TGCA AATTTTCACTAAAATCCGACCGC TTATTCACGTATTAC TERM 2274 1423083 - 1423034 - R 100 -17.5 -3.30459 | opp_overlap 1423034, overlap 1423029 AATCAAAAGATGCAA GCGGTCGAATTTCAAGGAAAATT TGCA AATTTTCACTAAAATCCGACCGC TTATTCACGTATTAC TERM 2275 1423091 - 1423109 + r 73 -6 -4.36903 | CCGACCGCTTATTCA CGTATTAC TTC GCAATACG TTTATATTTGATACG APJL_1295 1424765 - 1423095 - | putative ABC transporter ATP-binding protein TERM 2276 1423185 - 1423205 + g 75 -8.3 -3.78329 | opp_overlap 1423185 TTCATAATCAGAGAA GTTACCTTC GTA GAAGGTCAC TTTACCTTCATCGCC TERM 2277 1423205 - 1423185 - G 73 -8.3 -3.62644 | opp_overlap 1423185 TTCATAATCAGAGAA GTTACCTTC GTA GAAGGTCAC TTTACCTTCATCGCC TERM 2278 1424700 - 1424679 - G 77 -4.5 -5.03314 | overlap 1424680 TGCACCCGGAAAAAA GCTTAAAGA AATA TCTTTAAGG ATATGACGCTTCGGC TERM 2279 1424699 - 1424680 - G 70 -8 -3.61506 | overlap 1424679 GCACCCGGAAAAAAG CTTAAAGA AATA TCTTTAAG GATATGACGCTTCGG APJL_1296 1424930 - 1425268 + | putative gamma-carboxymuconolactone decarboxylase subunit APJL_1297 1425261 - 1425629 + | rhodanese-related sulfurtransferase APJL_1298 1425738 - 1426058 + | hypothetical protein TERM 2280 1426068 - 1426098 + T 100 -15.7 -3.54424 | opp_overlap 1426074, overlap 1426074 ATGTAATTTTGCCTA TAAAAATGACCGC TTGAT GCGGTCATTTTTA TTTAAAACAGTAGGA TERM 2281 1426092 - 1426074 - T 100 -10.3 -4.82901 | opp_overlap 1426068 1426074 TTTTGCCTATAAAAA TGACCGC TTGAT GCGGTCA TTTTTATTTAAAACA TERM 2282 1426074 - 1426092 + T 100 -10.3 -5.27335 | opp_overlap 1426074, overlap 1426068 TTTTGCCTATAAAAA TGACCGC TTGAT GCGGTCA TTTTTATTTAAAACA murA 1427390 - 1426116 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 2283 1426408 - 1426393 - G 74 -6.2 -4.4727 | opp_overlap 1426393 GGAATATGCATAAAA CGATTT TCAA AAATCG TTTCGGTAATACGGC TERM 2284 1427478 - 1427447 - R 78 -8.8 -3.77773 | opp_overlap 1427450, overlap 1427445 1427450 GAATAACTCAAAATA CAAGCGGTCATTTT TGCA AAAGCGACCGCTTA ATCATTCATTATCTT TERM 2285 1427450 - 1427475 + r 70 -8.3 -3.30956 | opp_overlap 1427450 1427447 1427445 TAACTCAAAATACAA GCGGTCATTTT TGCA AAAGCGACCGC TTAATCATTCATTAT TERM 2286 1427475 - 1427450 - R 77 -8.3 -3.99228 | opp_overlap 1427450, overlap 1427447 1427445 TAACTCAAAATACAA GCGGTCATTTT TGCA AAAGCGACCGC TTAATCATTCATTAT APJL_1300 1427770 - 1427510 - | transcriptional regulator APJL_1301 1428136 - 1427783 - | putative anti-sigma factor B antagonist TERM 2287 1428054 - 1428018 - G 100 -12.3 -5.24129 | opp_overlap 1428024, overlap 1428022 TTCGGCGATAAAAAA GAAGCACGCTGCCTCCA AAG CGGAAGCAACGTGTCTC GAGTTAATTCACCGG TERM 2288 1428050 - 1428022 - G 100 -13.9 -3.42236 | opp_overlap 1428024, overlap 1428018 GCGATAAAAAAGAAG CACGCTGCCTCCA AAG CGGAAGCAACGTG TCTCGAGTTAATTCA APJL_1302 1428784 - 1428146 - | ABC-type transport system involved in resistance to organic solvents, auxiliary component APJL_1303 1429383 - 1428856 - | ABC-type transport system involved in resistance to organic solvents, periplasmic component APJL_1304 1430178 - 1429402 - | permease APJL_1305 1430974 - 1430171 - | ABC transporter ATP binding protein degP 1431235 - 1432629 + | periplasmic serine protease TERM 2289 1432673 - 1432637 - T 95 -12.5 -3.9407 | opp_overlap 1432647, overlap 1432638 1432647 TTCAATAAAAACGAA GCATAAAAAATCCCACC GTT GGTGGGATTTTTTATTT AAGCATTTGCACAAA TERM 2290 1432672 - 1432638 - T 100 -16 -2.95358 | opp_overlap 1432647, overlap 1432637 1432647 TCAATAAAAACGAAG CATAAAAAATCCCACC GTT GGTGGGATTTTTTATT TAAGCATTTGCACAA TERM 2291 1432647 - 1432663 + T 100 -12.3 -5.63517 | opp_overlap 1432638 1432637 1432647 ACGAAGCATAAAAAA TCCCACC GTT GGTGGGA TTTTTTATTTAAGCA TERM 2292 1432663 - 1432647 - T 100 -12.3 -5.38249 | opp_overlap 1432647, overlap 1432638 1432637 ACGAAGCATAAAAAA TCCCACC GTT GGTGGGA TTTTTTATTTAAGCA APJL_1307 1433555 - 1432668 - | hypothetical protein TERM 2293 1433201 - 1433185 - G 75 -5.1 -4.83615 | GATTCGGTATAAAAA TTATCCG ATA CGGCTAA ATCACCGTAAAATCC argR 1434016 - 1433555 - | arginine repressor mdh 1434210 - 1435163 + | malate dehydrogenase TERM 2294 1435206 - 1435169 - f 89 -11 -4.02542 | gap 1, opp_overlap 1435171 1435179, overlap 1435179 AAATCCATAATGAAA TATAAATAAAGGGTTGA GTTAT TCAACCCTTT-TTTATA TGCTCAAAGCGGTTG TERM 2295 1435171 - 1435204 + F 75 -9.9 -2.78463 | gap 1, opp_overlap 1435169 1435179, overlap 1435179 ATCCATAATGAAATA TAAATAAAGGGTTGAG TTA TTCAACCCTTT-TTTA TATGCTCAAAGCGGT TERM 2296 1435197 - 1435179 - f 100 -8.9 -4.73432 | opp_overlap 1435171 1435179, overlap 1435169 TGAAATATAAATAAA GGGTTGA GTTAT TCAACCC TTTTTTATATGCTCA TERM 2297 1435179 - 1435197 + F 100 -9.6 -5.39721 | opp_overlap 1435179 1435169, overlap 1435171 TGAAATATAAATAAA GGGTTGAG TTA TTCAACCC TTTTTTATATGCTCA APJL_1310 1435253 - 1435522 + | hypothetical protein TERM 2298 1435569 - 1435535 - T 100 -13.1 -5.80248 | opp_overlap 1435538, overlap 1435538 TAAGATATAAAAAAA CAAGCGGTTGATTTT AATAA AAAATCAACCGCTTT TTCATATTTATTTAG TERM 2299 1435538 - 1435566 + T 100 -14.8 -4.97461 | opp_overlap 1435535 1435538 GATATAAAAAAACAA GCGGTTGATTTT AATAA AAAATCAACCGC TTTTTCATATTTATT TERM 2300 1435566 - 1435538 - T 100 -14.8 -4.92669 | opp_overlap 1435538, overlap 1435535 GATATAAAAAAACAA GCGGTTGATTTT AATAA AAAATCAACCGC TTTTTCATATTTATT adk 1436234 - 1435590 - | adenylate kinase TERM 2301 1436310 - 1436276 - R 84 -4.3 -5.57396 | overlap 1436277 1436281 ATAACGAATAAAAAA GCTAAGGCAGTAACC TTACC GATTACTGCCTGAAA TTGCAAATTTTTTAT TERM 2302 1436309 - 1436277 - R 74 -7.8 -3.91997 | overlap 1436276 1436281 TAACGAATAAAAAAG CTAAGGCAGTAACC TTACC GATTACTGCCTGAA ATTGCAAATTTTTTA TERM 2303 1436305 - 1436281 - R 84 -10.8 -3.57867 | overlap 1436277 1436276 GAATAAAAAAGCTAA GGCAGTAACC TTACC GATTACTGCC TGAAATTGCAAATTT TERM 2304 1436332 - 1436364 + r 83 -9.2 -3.95653 | opp_overlap 1436332, overlap 1436324 1436335 ATTTTTTATGAAAAA TAACCGCTTGCAAG AAGCC CTCACAAGCGGTTA TTTATACACTTATTT TERM 2305 1436364 - 1436332 - R 100 -14.3 -4.7254 | opp_overlap 1436332 1436324 1436335 ATTTTTTATGAAAAA TAACCGCTTGCAAGA AGC CCTCACAAGCGGTTA TTTATACACTTATTT TERM 2306 1436335 - 1436361 + r 70 -6.5 -4.08948 | opp_overlap 1436332, overlap 1436332 1436324 TTTTATGAAAAATAA CCGCTTGCAAG AAGCC CTCACAAGCGG TTATTTATACACTTA APJL_1312 1438509 - 1436386 - | iron-regulated outer membrane protein TERM 2307 1437560 - 1437574 + g 70 -7.2 -3.74224 | TGAGTCGTAATACGG TAACGA GGA TCGTTA TTTGCATCATTTGCA TERM 2308 1438667 - 1438624 - R 100 -15.1 -3.85296 | gap 1, opp_overlap 1438632, overlap 1438632 GTTATAACTAAAACA TATAAAAATGCCCTCTTATA AAAAA TATAAGAGGGCATTTT-ATA AGTAACTAGTTAATT TERM 2309 1438660 - 1438632 - R 100 -14.8 -5.186 | opp_overlap 1438632, overlap 1438624 TAAAACATATAAAAA TGCCCTCTTATA AAAAA TATAAGAGGGCA TTTTATAAGTAACTA TERM 2310 1438632 - 1438660 + r 100 -14.8 -4.431 | opp_overlap 1438624 1438632 TAAAACATATAAAAA TGCCCTCTTATA AAAAA TATAAGAGGGCA TTTTATAAGTAACTA ampG 1439966 - 1438686 - | permease and signal transducer TERM 2311 1438910 - 1438897 - G 73 -5.9 -4.42386 | TCGCGAGCCATAAAA GCGAC AAAT GCCGC CGTACCTAAACCAAC TERM 2312 1439158 - 1439136 - G 72 -6.3 -4.27617 | gap 1, opp_overlap 1439128 1439155, overlap 1439137 1439139 GATACTGCACCAAAA CGA-GGTGGT TTTT ACCACCGCCG CGATATGCGACTTGG TERM 2313 1439660 - 1439649 - G 90 -7.2 -5.15634 | TACCGGATCAAAAAA GCCG AATC CGGC TAAAATTACCAATAA TERM 2314 1439928 - 1439900 - G 82 -8.3 -4.32857 | opp_overlap 1439908, overlap 1439921 CGGTGTAAAGACAAA GCAACATATTTTT GGT AAAAATTTGTCGC CAAATTGAGGGTTGA TERM 2315 1440085 - 1440062 - R 100 -8.9 -5.4251 | opp_overlap 1440062 TTCAGAGATAAAAAA GGCACAAAC CTAAAC GCTTGTGCC TTCGTTTAACTAATG TERM 2316 1440115 - 1440129 + r 84 -4.3 -5.43866 | GCTTGTTAGCCTTTA TAACC GTTCG GGTTA TTTTTTTGCCAATTC galE 1441121 - 1440105 - | UDP-glucose-4-epimerase ligA 1443235 - 1441187 - | NAD-dependent DNA ligase LigA TERM 2317 1441673 - 1441685 + g 74 -4.1 -4.92239 | overlap 1441667 TGCAAATAGGAAACG TGCCA AAG TGGTA TTTTTCGCTTTTTCG TERM 2318 1441928 - 1441914 - G 70 -5.6 -4.38927 | overlap 1441915 GCGCCACAGAATAAA CCGCCG GTA CAGCGA GCAACCGCTTCACCT TERM 2319 1441984 - 1441995 + g 90 -2.2 -5.91981 | AGACCGGGCAAGCGG TCGG AAAT TCGA TTTTTTTTGCATTTT TERM 2320 1442182 - 1442199 + g 78 -10.5 -3.29511 | GCTCTAATTTTGCGA CCGGGGT AATC GCCCCGG TTCTGCCCACCTGAA TERM 2321 1443256 - 1443276 + r 85 -9.7 -3.96892 | opp_overlap 1443257, overlap 1443257 1443259 AATTCTCGATAAAAA AGACCGCTT AAC AAGCGGTCG TTTATGCTAAAAGTT TERM 2322 1443257 - 1443275 + r 93 -13.2 -2.97653 | opp_overlap 1443257, overlap 1443256 1443259 ATTCTCGATAAAAAA GACCGCTT AAC AAGCGGTC GTTTATGCTAAAAGT TERM 2323 1443275 - 1443257 - R 100 -13.2 -5.24531 | opp_overlap 1443256 1443257 1443259 ATTCTCGATAAAAAA GACCGCTT AAC AAGCGGTC GTTTATGCTAAAAGT TERM 2324 1443259 - 1443273 + r 76 -10 -3.04122 | opp_overlap 1443257, overlap 1443257 1443256 TCTCGATAAAAAAGA CCGCTT AAC AAGCGG TCGTTTATGCTAAAA zipA 1444309 - 1443299 - | cell division protein ZipA TERM 2325 1443699 - 1443709 + g 80 -4.6 -5.08601 | GTAAGCATATTATTT TCGG CAA CCGG TTTTTGTTCCGCTAC TERM 2326 1443855 - 1443841 - G 73 -10 -3.02511 | opp_overlap 1443849, overlap 1443846 1443849 CCGATTGTTCTAACA CGGAAG TAG CTTCCG CAATCGGTGATTGCG cysZ 1444429 - 1445310 + | putative sulfate transport protein CysZ TERM 2327 1445365 - 1445342 - T 71 -5.2 -4.56597 | opp_overlap 1445344 1445345, overlap 1445345 TGTTTTTTGCAAAAA GAAGCCTCTC TTTC GAGAGGCATT TTAGTTATTTGGTTT TERM 2328 1445344 - 1445363 + T 84 -7.8 -4.63107 | opp_overlap 1445342 1445345, overlap 1445345 TTTTTTGCAAAAAGA AGCCTCTC TTTC GAGAGGCA TTTTAGTTATTTGGT TERM 2329 1445362 - 1445345 - T 95 -11.3 -4.40561 | opp_overlap 1445345 1445344, overlap 1445342 TTTTTGCAAAAAGAA GCCTCTC TTTC GAGAGGC ATTTTAGTTATTTGG TERM 2330 1445345 - 1445362 + T 82 -11.3 -3.36237 | opp_overlap 1445342 1445345, overlap 1445344 TTTTTGCAAAAAGAA GCCTCTC TTTC GAGAGGC ATTTTAGTTATTTGG APJL_1318 1445696 - 1445370 - | hypothetical protein TERM 2331 1445725 - 1445748 + r 95 -11.1 -4.60255 | opp_overlap 1445725 TTTGAGTTAAAAAAA GCGGGTAAT TCATTT ATTACCCGC TTTTTAGAAGCTTCT TERM 2332 1445748 - 1445725 - R 100 -11.1 -5.47218 | opp_overlap 1445725 TTTGAGTTAAAAAAA GCGGGTAAT TCATTT ATTACCCGC TTTTTAGAAGCTTCT gnd 1447242 - 1445788 - | 6-phosphogluconate dehydrogenase TERM 2333 1447312 - 1447275 - R 82 -10.8 -3.30124 | opp_overlap 1447275 TTTGATTCGTTACAA GCGGTTAAATTTGCAA GATTTT TTGTAAATTCAACCGC TTGCTACTCCCCACA TERM 2334 1447275 - 1447312 + r 84 -11.5 -3.21099 | opp_overlap 1447275 TTTGATTCGTTACAA GCGGTTAAATTTGCAAG ATTT TTTGTAAATTCAACCGC TTGCTACTCCCCACA TERM 2335 1447424 - 1447443 + r 73 -8.6 -3.4285 | opp_overlap 1447424, overlap 1447421 CAACACTATATATAA CCTAGTAC GTAA GTGCTAGG TTGTCACTTCACTAA APJL_1320 1447955 - 1447455 - | hypothetical protein TERM 2336 1447661 - 1447648 - G 71 -2.3 -5.12987 | TGAAATAAAAAGAAA GCCCC CCAA GAAGC CCTTTCAAACCCTTT racX 1448783 - 1448094 - | RacX protein TERM 2337 1448839 - 1448801 - R 78 -10.5 -3.05384 | gap 1, opp_overlap 1448803 TTTCTCCTTACGCAA GC-GGTCGAATTTGCAGA AAAG TTTGCAAATTCGACCTAC TTAGAAATGCCTAAA TERM 2338 1448803 - 1448836 + r 100 -17.7 -2.72463 | opp_overlap 1448801 TCTCCTTACGCAAGC GGTCGAATTTGCAGA AAAG TTTGCAAATTCGACC TACTTAGAAATGCCT TERM 2339 1448855 - 1448872 + r 79 -11.3 -3.10908 | opp_overlap 1448847 1448855 TTAGAAATGCCTAAA GGTGGGA GTAT TCCCACC TTAAATAATGAGTTT TERM 2340 1448872 - 1448855 - R 88 -11.3 -3.65426 | opp_overlap 1448855, overlap 1448847 TTAGAAATGCCTAAA GGTGGGA GTAT TCCCACC TTAAATAATGAGTTT APJL_1322 1450205 - 1448886 - | putative transport protein TERM 2341 1450329 - 1450311 - R 72 -7.6 -3.81461 | opp_overlap 1450314 AAATATTAAGCTAAA TTATGAAT TTC ATTCATAA TCTACAAACTATAAC nagB1 1451036 - 1450338 - | 6-phosphogluconolactonase/glucosamine-6-phosphateisomerase/deaminase TERM 2342 1450376 - 1450386 + g 82 -6.8 -4.82855 | GGTCTAAGTACCACT CGGT TAC ACCG TTTTTCGCTTTGATA zwf 1452610 - 1451123 - | glucose-6-phosphate 1-dehydrogenase TERM 2343 1451308 - 1451286 - G 100 -13.4 -3.65581 | ACGAATTTCCAACAA GCGTGTACCG CAT CGGTACGCGC GAATAAAGTCGCATC TERM 2344 1451360 - 1451349 - G 73 -5.8 -4.46854 | opp_overlap 1451348 GCATCTAATAATAAA CGCT CATA AGCG GTTAATAGGCTGGAA TERM 2345 1451676 - 1451686 + g 71 -2.4 -5.20333 | TCTGTATTTGAATCC GCCG GTA CGCC TTTTTCTTCTAAATA cysQ 1453497 - 1452682 - | 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase TERM 2346 1453054 - 1453069 + g 73 -5.4 -4.63486 | gap 1, opp_overlap 1453054, overlap 1453045 CTGATGTCCGACAAG CGGTCGA ATT TCG-CCG TTTTCTTGCAAAAAT TERM 2347 1453205 - 1453189 - G 100 -9.5 -4.58424 | opp_overlap 1453189 1453186 GATTACCACAGAAAA TTGATCG GTA CGATCAA TAAATTGTTGCGTCC APJL_1326 1454067 - 1453510 - | ADP-ribose diphosphatase NudE TERM 2348 1454392 - 1454367 - g 73 -8.3 -3.60818 | GCAAAACGGTCGAAA TCGGCGCAACT ATCA AGCTACGCCAA GGTAACGATGAAAAA hslR 1454210 - 1454614 + | heat shock protein 15-like protein TERM 2349 1454648 - 1454675 + F 100 -9.8 -5.07652 | overlap 1454651 TATTGAACTCGATTT GACGGCACACAG TTTA CGGTGTGCCTTC TTTTATTTTAACAAG TERM 2350 1454651 - 1454672 + F 91 -10.1 -4.6313 | overlap 1454648 TGAACTCGATTTGAC GGCACACAG TTTA CGGTGTGCC TTCTTTTATTTTAAC TERM 2351 1454809 - 1454795 - g 71 -7 -4.14739 | opp_overlap 1454800 CTATTTATTCCAAAA CCGTGC CGT GCGCGG CGAATGGGTTCGTTT hslO 1454745 - 1455635 + | Hsp33-like chaperonin TERM 2352 1455644 - 1455690 + T 100 -15.4 -4.23045 | opp_overlap 1455645, overlap 1455645 1455648 TTTATAACGCAAAAA ATAAGCGGTTCGATTTTGTATA AAT TTTACTAAATCGAACCGCTTAC TTTATTGAGTCATTA TERM 2353 1455689 - 1455645 - T 100 -18.9 -5.1925 | opp_overlap 1455644 1455645 1455648 TTATAACGCAAAAAA TAAGCGGTTCGATTTTGTATA AAT TTTACTAAATCGAACCGCTTA CTTTATTGAGTCATT TERM 2354 1455645 - 1455689 + T 100 -18.9 -3.13104 | opp_overlap 1455645, overlap 1455644 1455648 TTATAACGCAAAAAA TAAGCGGTTCGATTTTGTATA AAT TTTACTAAATCGAACCGCTTA CTTTATTGAGTCATT TERM 2355 1455648 - 1455686 + T 100 -16.2 -3.69809 | opp_overlap 1455645, overlap 1455645 1455644 TAACGCAAAAAATAA GCGGTTCGATTTTGTATA AAT TTTACTAAATCGAACCGC TTACTTTATTGAGTC dcuB2 1457037 - 1455703 - | anaerobic C4-dicarboxylate transporter TERM 2356 1456650 - 1456632 - G 71 -8.8 -3.35867 | CTAATTGCGAAGCAA CCGATGCC GCC GCCATCGG GCGTTCAGGACGAAT APJL_1330 1457267 - 1457437 + | hypothetical protein TERM 2357 1457555 - 1457544 - f 70 -3 -5.14698 | AAATGCAAAATAAAA GAAT TATT ATTC ATGCATAAATTTAGA argF 1457902 - 1458906 + | ornithine carbamoyltransferase arcC 1458928 - 1459875 + | carbamate kinase TERM 2358 1459959 - 1459907 - T 71 -4.9 -4.57837 | opp_overlap 1459893 1459924, overlap 1459924 AGATTTTGCTAAAAA TCTGTAATATCAAGTAAGGGCGTAC CGA GTACGCCCTTTTTTAATACAATTGA TTGGTTACGGTAATA TERM 2359 1459942 - 1459924 - T 100 -14.6 -3.45768 | opp_overlap 1459924, overlap 1459907 TGTAATATCAAGTAA GGGCGTAC CGA GTACGCCC TTTTTTAATACAATT TERM 2360 1459924 - 1459942 + T 100 -14.6 -5.16237 | opp_overlap 1459907 1459924 TGTAATATCAAGTAA GGGCGTAC CGA GTACGCCC TTTTTTAATACAATT TERM 2361 1460103 - 1460068 - T 74 -7.6 -3.96148 | opp_overlap 1460064 1460069 1460073, overlap 1460069 1460073 CGCTTGTAGCATAAA CGAAAGCCCATAAACC TTAC GCTTTAGGGGCTTTCT CTATTGTTTTATCGC TERM 2362 1460102 - 1460069 - T 79 -11.1 -2.97475 | opp_overlap 1460069 1460064 1460073, overlap 1460068 1460073 GCTTGTAGCATAAAC GAAAGCCCATAAACC TTAC GCTTTAGGGGCTTTC TCTATTGTTTTATCG TERM 2363 1460069 - 1460102 + T 82 -11.1 -3.45078 | opp_overlap 1460068 1460069 1460073, overlap 1460064 1460073 GCTTGTAGCATAAAC GAAAGCCCATAAACC TTAC GCTTTAGGGGCTTTC TCTATTGTTTTATCG ptsB 1461544 - 1460123 - | phosphotransferase system enzyme II,sucrose-specific, factor IIBC TERM 2364 1461082 - 1461100 + g 70 -7.4 -3.90112 | opp_overlap 1461084, overlap 1461084 TGATAAAATCAATCA GATCCGCA AAT TGCGGATA TTTACTTGCAACCGA TERM 2365 1461098 - 1461084 - G 73 -10 -3.02386 | opp_overlap 1461082 1461084 ATAAAATCAATCAGA TCCGCA AAT TGCGGA TATTTACTTGCAACC TERM 2366 1461084 - 1461098 + g 78 -10 -3.54146 | opp_overlap 1461084, overlap 1461082 ATAAAATCAATCAGA TCCGCA AAT TGCGGA TATTTACTTGCAACC TERM 2367 1461594 - 1461639 + r 91 -9.3 -4.47551 | opp_overlap 1461588 1461600, overlap 1461600 ATGATTATATTTTAA CTAAAACGTTTTAGCTAAA ACAGAAAA TTCTGCTAAAACGTTTTAG TTTTGTCGATTAGAT thiQ 1462378 - 1461734 - | thiamin ABC transporter,ATP-binding protein thiP1 1464000 - 1462375 - | thiamine transporter membrane protein ptsH 1464237 - 1464494 + | PTS system phosphocarrier protein HPr TERM 2368 1464572 - 1464524 - f 80 -9.8 -3.56092 | gap 1, opp_overlap 1464525 1464528, overlap 1464525 1464527 TTATTATGTTGTAAA GCAGCCCTATTGCCATTCCTATT AAAA AATAGGGATGG-AATAGGGTTGT ATTGTGCTATATGAG TERM 2369 1464525 - 1464571 + F 100 -17.7 -3.32109 | gap 1, opp_overlap 1464525 1464524 1464527, overlap 1464528 TATTATGTTGTAAAG CAGCCCTATTGCCATTCCTATT AAAA AATAGGGATGG-AATAGGGTTG TATTGTGCTATATGA TERM 2370 1464571 - 1464525 - f 88 -13.3 -2.73441 | gap 1, opp_overlap 1464525 1464528, overlap 1464524 1464527 TATTATGTTGTAAAG CAGCCCTATTGCCATTCCTATT AAAA AATAGGGATGG-AATAGGGTTG TATTGTGCTATATGA TERM 2371 1464569 - 1464527 - f 75 -10.1 -2.91144 | gap 1, opp_overlap 1464525 1464528, overlap 1464525 1464524 TTATGTTGTAAAGCA GCCCTATTGCCATTCCTATT AAAA AATAGGGATGG-AATAGGGT TGTATTGTGCTATAT TERM 2372 1464528 - 1464568 + F 100 -15.8 -3.78879 | gap 1, opp_overlap 1464527 1464525 1464524, overlap 1464525 TATGTTGTAAAGCAG CCCTATTGCCATTCCTATT AAAA AATAGGGATGG-AATAGGG TTGTATTGTGCTATA TERM 2373 1465485 - 1465514 + G 71 -6.6 -4.09519 | gap 2, overlap 1465487 1465488 TTACGTAACGGCGGC GAAT-CGGT-CGGT TTAT ACCGTACCGAATTC TTATTTATGGATCGT ptsI 1464618 - 1466339 + | phosphoenolpyruvate-protein phosphotransferase TERM 2374 1466360 - 1466400 + F 72 -7.7 -3.65046 | opp_overlap 1466362, overlap 1466362 1466369 1466371 AATAAATGGCATACA AAGACAAGATTCTCGTATA GAA TGTACGGGTATTTTGTCTA TTATTAAAATAACGG TERM 2375 1466362 - 1466398 + F 80 -10.3 -3.40611 | opp_overlap 1466362, overlap 1466360 1466369 1466371 TAAATGGCATACAAA GACAAGATTCTCGTATA GAA TGTACGGGTATTTTGTC TATTATTAAAATAAC crr 1466424 - 1466924 + | glucose-specific PTS system component TERM 2376 1466971 - 1466949 - f 79 -10.6 -3.22818 | opp_overlap 1466949, overlap 1466947 1466945 ACAAAGAAAAGCATA TGCCACGGTA CTA TATCGTGGCA TTTTTGTTTGCTAAT TERM 2377 1466949 - 1466971 + F 100 -12.8 -5.34309 | opp_overlap 1466947 1466945 1466949 ACAAAGAAAAGCATA TGCCACGGTA CTA TATCGTGGCA TTTTTGTTTGCTAAT TERM 2378 1467041 - 1467064 + F 100 -11.8 -5.29885 | ATAAACCGAATTTGT GCGTAAAGGG ATTC CTCTTTACGC TTTTATTTTTAACTT TERM 2379 1468196 - 1468184 - g 80 -2.6 -5.55695 | overlap 1468185 GAAGAAGAGAAAAAA GCGC GTTTA GCAC GTTTACAACAACGTA APJL_1339 1467146 - 1468537 + | bifunctional enzyme involved in thiolation andmethylation of tRNA TERM 2380 1468546 - 1468577 + F 100 -14.7 -4.80882 | opp_overlap 1468549 TCTATAATACTCATT CAAGCAGATCTTA TTAAAT TAAGATCTGCTTG TTTTTCATATACAAT TERM 2381 1468574 - 1468549 - f 78 -10.6 -3.10255 | opp_overlap 1468546 ATAATACTCATTCAA GCAGATCTTA TTAAAT TAAGATCTGC TTGTTTTTCATATAC uvrD 1468739 - 1470937 + | DNA-dependent helicase II TERM 2382 1470963 - 1470987 + F 100 -10.2 -5.88197 | ATAGGGTGAATATCG GCATATATGA TTTAT TCATATATGC TTTTTTTCTATTTAA TERM 2383 1471856 - 1471837 - g 71 -5 -4.59773 | TTCGATTTGGAAAAA TGTATTGC CTAT GCAAAACA AGTGAATCCGAATAT hypB 1471141 - 1471950 + | hydrogenase nickel incorporation protein HypB hypD 1471962 - 1473077 + | hydrogenase maturation factor hypE 1473151 - 1474092 + | hydrogenase maturation factor TERM 2384 1474374 - 1474341 - T 80 -10.5 -3.29109 | opp_overlap 1474341, overlap 1474339 1474337 CAAAGAGATAATATA GTTGCTAATAGATAT TTTA ACTTCTATTAGCAAC TCTCCTTAAATAACG apxIIID 1475865 - 1474432 - | RTX-III toxin determinant D TERM 2385 1475436 - 1475450 + g 86 -2.8 -5.76237 | CTAATCTTTCCAATC CTAACG ATA CTTTAG TTTTTTGTTTGTCTG apxIIIB 1478000 - 1475877 - | toxin RTX-III translocation ATP-binding protein (RTX-III toxin determinant B) TERM 2386 1475984 - 1475994 + g 88 -6.8 -5.21709 | opp_overlap 1475984 TTTCCATAACAATAA TGCG ATC CGCA TTTTTTACTGTAGAA TERM 2387 1477450 - 1477440 - G 70 -5.4 -4.43189 | overlap 1477444 ATTAAGTGTAGAAAA TCCA CGA TGGA CAAGAACTTTATCCA TERM 2388 1477537 - 1477517 - G 87 -5.5 -5.4477 | AAAGCTGCAAAAAAA TAGAAACAA TAA TAGTTTCTA CAAAAATTTTACGGT TERM 2389 1478021 - 1478051 + r 72 -8.5 -3.53712 | opp_overlap 1478021, overlap 1478017 ACTCCATAAATAAAA TAGCAATCCTA GAATAGCCA TAGGATTGCTA TTGATTATTGCAGAT TERM 2390 1478051 - 1478021 - R 95 -8.5 -4.99645 | gap 1, opp_overlap 1478021 1478017 ACTCCATAAATAAAA TAGCAATCCTA-GA ATAG CCATAGGATTGCTA TTGATTATTGCAGAT apxIIIA 1481227 - 1478069 - | RTX-III toxin determinant A from serotype 8 apxIIIC 1481647 - 1481231 - | hemolysin-activating lysine-acyltransferase HlyC TERM 2391 1481723 - 1481738 + r 74 -4.8 -4.88736 | AGTTGTAAAATCATC TGTTAA ATTT TTAACA TTTTTATAACTCATA TERM 2392 1481829 - 1481815 - R 76 -5.8 -4.65916 | CGGATTTTAACAAAA TTTCTT ACA AAGAAA ATATAGAAATCTTTT TERM 2393 1482034 - 1482047 + r 81 -3.9 -5.45726 | TATACTGGCATGACC TTACT AATT AGTAA TTTTTTTACCATGTA TERM 2394 1482178 - 1482156 - R 100 -12.8 -4.68132 | opp_overlap 1482156 TAAGATATAAATAAA GCCTTGCACA ATT TATGCAAGGC TTATTTGAAAGCGCA TERM 2395 1482156 - 1482178 + r 88 -10.6 -3.90744 | opp_overlap 1482156 TAAGATATAAATAAA GCCTTGCACA ATT TATGCAAGGC TTATTTGAAAGCGCA hypF 1484498 - 1482195 - | hydrogenase maturation factor TERM 2396 1483478 - 1483489 + g 72 -7.2 -4.07246 | CGTTATCCAGCACTG GCGG CAAT CCGC TTTGGTTTGCACTGG TERM 2397 1483649 - 1483669 + g 89 -3.9 -5.64873 | overlap 1483651 1483654 ATAACACAATCGGCG CGGCACTAC TTT GTAGTTGCG TTTTTTCTTCTTCGG TERM 2398 1485133 - 1485144 + G 73 -7.2 -4.10657 | TATATTGTATGATTG CGGG TAAA CCCG TTTTAGAACATATCA TERM 2399 1485332 - 1485344 + G 71 -9.1 -3.28304 | overlap 1485330 1485328 TCCTCATAATTTCTT GGCGA CCG TCGCC TATATTATTACCTAT TERM 2400 1485489 - 1485505 + G 80 -8.7 -3.95219 | opp_overlap 1485489 1485491, overlap 1485501 TACGGCGATGAAGGA CACCGAC AAG GTTGGTG TTTATACCATTTAGG hyaA 1484733 - 1485875 + | hydrogenase 2 small subunit TERM 2401 1485968 - 1485985 + G 76 -9.9 -3.25906 | overlap 1485966 1485949 AAAATCGTCCTCGGA TACCGAC TGCC GTCGGTA TGTTGTACGATTCTA TERM 2402 1486211 - 1486198 - g 75 -3.1 -5.21709 | GCTTACATTAAAAAA CAATG TATG CACTG TGTTGAACCCAATTG hybA2 1485868 - 1486905 + | hydrogenase 2 protein HybA cytB 1486898 - 1488079 + | putative hydrogenase 2 b cytochrome subunit TERM 2403 1489284 - 1489270 - g 73 -8.6 -3.6288 | AAATTAACCGTGAAA CACTTC AAT GAAGTG AAAAACTTATATAAA TERM 2404 1489474 - 1489462 - g 83 -9.1 -4.18494 | opp_overlap 1489470, overlap 1489469 1489470 GATGCTTACTTAAAA GCGGA AAT TCCGC CGACAGGCGAATTTA hyaB 1488076 - 1489785 + | hydrogenase 2 large subunit TERM 2405 1489884 - 1489872 - g 75 -3.3 -5.10208 | GAACTGGAACAAAAA CCGGA ACT TACGG CGTTCTTAGATATTG hyaD 1489785 - 1490282 + | hydrogenase 2 maturation endopeptidase hybE 1490275 - 1490778 + | hydrogenase 2-specific chaperone hypC 1490806 - 1491084 + | hydrogenase 2 accessory protein HypG TERM 2406 1491151 - 1491114 - T 91 -5.7 -5.90231 | gap 1, opp_overlap 1491114, overlap 1491126 ATAAATAGAAAAAAA GCCGAATAA-AAAGTGTT TAT AACACAACGTTATTCGGC TTTCTTATACCAATC TERM 2407 1491138 - 1491126 - T 83 -6.3 -5.11112 | opp_overlap 1491114, overlap 1491114 AAAGCCGAATAAAAA GTGTT TAT AACAC AACGTTATTCGGCTT hybF 1491520 - 1491179 - | hydrogenase nickel incorporation protein hybF TERM 2408 1491675 - 1491691 + r 78 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 2409 1491826 - 1491804 - R 76 -10.6 -2.72511 | opp_overlap 1491795 1491808, overlap 1491803 GGCACGCCCCGAAAG GCGAGGGATT TTA AATCCCTTGC GTCTACCGATTCCGC TERM 2410 1491808 - 1491822 + r 71 -8.6 -3.12847 | opp_overlap 1491804 1491803, overlap 1491795 CGCCCCGAAAGGCGA GGGATT TTA AATCCC TTGCGTCTACCGATT TERM 2411 1491945 - 1491923 - R 76 -10.6 -2.72511 | opp_overlap 1491914 1491927, overlap 1491922 GGCACGCCCCGAAAG GCGAGGGATT TTA AATCCCTTGC GTCTACCGATTCCGC TERM 2412 1491927 - 1491941 + r 71 -8.6 -3.12847 | opp_overlap 1491923 1491922, overlap 1491914 CGCCCCGAAAGGCGA GGGATT TTA AATCCC TTGCGTCTACCGATT TERM 2413 1492025 - 1492041 + r 78 -10.9 -2.62616 | opp_overlap 1492004 TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 2414 1492156 - 1492134 - R 76 -10.6 -2.72511 | opp_overlap 1492125 1492138, overlap 1492133 GGCACGCCCCGAAAG GCGAGGGATT TTA AATCCCTTGC GTCTACCGATTCCGC TERM 2415 1492138 - 1492152 + r 71 -8.6 -3.12847 | opp_overlap 1492134 1492133, overlap 1492125 CGCCCCGAAAGGCGA GGGATT TTA AATCCC TTGCGTCTACCGATT TERM 2416 1492225 - 1492241 + r 78 -10.9 -2.62616 | opp_overlap 1492204 TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 2417 1492295 - 1492276 - R 100 -9.3 -5.06414 | opp_overlap 1492275 1492276 TTCCCGCAATAAAAA CGCTACG TTATTT CGTAGCG ATTTATGTGCCGTAT TERM 2418 1492276 - 1492295 + r 74 -9.3 -3.02966 | opp_overlap 1492276, overlap 1492275 TTCCCGCAATAAAAA CGCTACG TTATTT CGTAGCG ATTTATGTGCCGTAT mfd 1495884 - 1492435 - | transcription repair coupling factor TERM 2419 1493661 - 1493673 + g 75 -9.1 -3.73914 | TCTCTTTTTGACGCA CACCG AAG CGGTG TTCTTCATCAATAAT TERM 2420 1494988 - 1495002 + g 77 -6.4 -4.58395 | TTGTTCAGTATCCTT GTGGAA CTG TTCCGC TTTTTCCGCAATACC TERM 2421 1495360 - 1495328 - G 91 -6.2 -5.55664 | overlap 1495333 TCATCATCAAAAAAA TCCAAGCGGAACGG GCTTT CCGCTCCCATCGGA TAGAGGTCAAGTAAT TERM 2422 1498456 - 1498479 + G 76 -7.6 -4.11281 | CACAAGTCGCATCAC GTTTAATCGA ACCG TTGATTAAAC TTTCTCGTTATGATA pepN 1495986 - 1498595 + | aminopeptidase N protein TERM 2423 1498620 - 1498641 + T 95 -11.7 -4.66953 | opp_overlap 1498620 GAGACAGATAAAAAA GCCTAATTC GTAA GAATTAGGC TTTTTACCATATTGC TERM 2424 1498641 - 1498620 - T 100 -11.7 -5.4492 | opp_overlap 1498620 GAGACAGATAAAAAA GCCTAATTC GTAA GAATTAGGC TTTTTACCATATTGC TERM 2425 1498717 - 1498662 - T 78 -9.4 -3.56821 | gap 1, opp_overlap 1498665, overlap 1498665 1498711 ACCATATTGCTTAAA CAAGCGGTTGGATTAAATGA-AATTTT TGT AAACTTCTCATTAAATTCAACCGCTTA TTCAATCGGAATCTT TERM 2426 1498714 - 1498665 - T 80 -8.9 -3.91984 | gap 1, opp_overlap 1498665, overlap 1498662 1498711 ATATTGCTTAAACAA GCGGTTGGATTAAATGA-AATTTT TGT AAACTTCTCATTAAATTCAACCGC TTATTCAATCGGAAT TERM 2427 1498665 - 1498714 + T 88 -11.1 -3.67775 | gap 1, opp_overlap 1498662 1498665 1498711 ATATTGCTTAAACAA GCGGTTGGATTAAATGA-AATTTT TGT AAACTTCTCATTAAATTCAACCGC TTATTCAATCGGAAT APJL_1359 1499323 - 1498733 - | putative glycerol-3-phosphate acyltransferase PlsY folB 1499395 - 1499748 + | dihydroneopterin aldolase TERM 2428 1500103 - 1500123 + G 75 -5.3 -4.86731 | TATGTGGGAGCGGTT GCAATCGGG GAA TCCGGTCGC TTTTATTTCGGGGCG cdd 1499857 - 1500750 + | cytidine deaminase TERM 2429 1500788 - 1500760 - T 88 -8.4 -4.6902 | gap 1, opp_overlap 1500761 1500768, overlap 1500761 1500768 GTATAATCGCAAAAA TGAAAAAAGCACC TTAG GGTGCTTTTTT-A TATATTGATTAGTAT TERM 2430 1500761 - 1500788 + T 77 -10 -3.20226 | opp_overlap 1500760 1500761 1500768, overlap 1500768 TATAATCGCAAAAAT GAAAAAAGCACC TTAG GGTGCTTTTTTA TATATTGATTAGTAT TERM 2431 1500788 - 1500761 - T 78 -10 -3.40689 | opp_overlap 1500761 1500768, overlap 1500760 1500768 TATAATCGCAAAAAT GAAAAAAGCACC TTAG GGTGCTTTTTTA TATATTGATTAGTAT TERM 2432 1500781 - 1500768 - T 100 -8.1 -5.54079 | opp_overlap 1500761 1500768, overlap 1500760 1500761 GCAAAAATGAAAAAA GCACC TTAG GGTGC TTTTTTATATATTGA TERM 2433 1500768 - 1500781 + T 100 -8.1 -5.47431 | opp_overlap 1500768 1500760 1500761, overlap 1500761 GCAAAAATGAAAAAA GCACC TTAG GGTGC TTTTTTATATATTGA fstX 1501735 - 1500797 - | cell division protein FtsX fstE 1502311 - 1501745 - | cell division ATP-binding protein TERM 2434 1501944 - 1501930 - G 71 -4.2 -4.89477 | CGGCTAATAATAAAA TCGGAC GAT GTACGA TCGCACGGGCAATAT ftsY 1504210 - 1502489 - | cell division protein TERM 2435 1502745 - 1502764 + g 71 -2.1 -5.14563 | overlap 1502744 1502747 GTGAGCATAATTTCG TGCGGTG CGCTTT CATCGTA TTTTTTCGTCACGCG APJL_1365 1504288 - 1504881 + | putative methylase APJL_1366 1504946 - 1505257 + | dsDNA-mimic protein hpaC 1505273 - 1505785 + | 4-hydroxyphenylacetic acid hydroxylase putative coupling protein TERM 2436 1505811 - 1505827 + F 100 -10.9 -5.4833 | opp_overlap 1505811 GTATTTTTGATATAA CCGACTA TTT TAGTCGG TTTTTTATTGCCTAG TERM 2437 1505827 - 1505811 - f 84 -10.9 -3.48924 | opp_overlap 1505811 GTATTTTTGATATAA CCGACTA TTT TAGTCGG TTTTTTATTGCCTAG TERM 2438 1506745 - 1506735 - g 74 -6.8 -4.28361 | opp_overlap 1506725 GCAACCGTATTAAAA TGCG TTT CGCA ACCATGTTAGCCAAG tehB 1505900 - 1506772 + | tellurite resistance protein TehB TERM 2439 1506795 - 1506850 + T 100 -18.6 -3.32022 | opp_overlap 1506795 1506798, overlap 1506798 TTTTTATCCTAACAA CAAGCGGTCTGATTTATCGGGAAATT TGCA AATTTCTCTCAAAATCAGACCGCTTG TTCGTATATAAAAAA TERM 2440 1506850 - 1506795 - T 100 -16.4 -3.65046 | opp_overlap 1506795 1506798, overlap 1506798 TTTTTATCCTAACAA CAAGCGGTCTGATTTATCGGGAAATT TGCA AATTTCTCTCAAAATCAGACCGCTTG TTCGTATATAAAAAA TERM 2441 1506798 - 1506847 + T 100 -14.5 -3.80018 | opp_overlap 1506798 1506795, overlap 1506795 TTATCCTAACAACAA GCGGTCTGATTTATCGGGAAATT TGCA AATTTCTCTCAAAATCAGACCGC TTGTTCGTATATAAA TERM 2442 1506847 - 1506798 - T 93 -12.3 -3.96068 | opp_overlap 1506795 1506798, overlap 1506795 TTATCCTAACAACAA GCGGTCTGATTTATCGGGAAATT TGCA AATTTCTCTCAAAATCAGACCGC TTGTTCGTATATAAA TERM 2443 1506888 - 1506866 - T 100 -16.4 -5.36441 | opp_overlap 1506857 TTCGTATATAAAAAA GGTACTCGTC AGA GACGAGTACC ATCGCTAAAATTTAC artM1 1507583 - 1506900 - | arginine transporter permease subunit ArtM TERM 2444 1507339 - 1507329 - G 75 -5.4 -4.85599 | CGCATCGGATAAAAA TTGC CAA GCAA AGCTATCGACAATCC artQ 1508254 - 1507583 - | arginine transporter permease subunit ArtQ TERM 2445 1508223 - 1508194 - G 73 -10.2 -2.55544 | gap 1, overlap 1508190 CTATCAGGGAAGTCA GTGCCAACCCTAA GGTCA TTAGGGTTG-CAC TATAAATAAGCGGAA artI 1508979 - 1508260 - | ABC-type amino acid transport system,periplasmic component artP 1509733 - 1508999 - | arginine transporter ATP-binding subunit TERM 2446 1509839 - 1509871 + r 100 -9.2 -4.84017 | opp_overlap 1509839 AATTTTTATAAAGAA CGACCGCTTGTCAT TCAAT ATAACAAGCAGTCG TTTTTCTCCGAAGTT TERM 2447 1509871 - 1509839 - R 100 -13.6 -4.07535 | opp_overlap 1509839 AATTTTTATAAAGAA CGACCGCTTGTCAT TCAAT ATAACAAGCAGTCG TTTTTCTCCGAAGTT APJL_1373 1510455 - 1509958 - | phospholipid-binding protein TERM 2448 1510103 - 1510126 + g 73 -8.2 -3.64049 | gap 1, opp_overlap 1510103, overlap 1510095 1510105 TAACGATGTTTACAA TT-CGGCGGTG CCA TACCGCCGTAA TTTGAAGCTTCTTCG TERM 2449 1510125 - 1510103 - G 71 -9.1 -3.32268 | opp_overlap 1510103 1510095 1510105 TAACGATGTTTACAA TTCGGCGGT GCCAT ACCGCCGTA ATTTGAAGCTTCTTC TERM 2450 1510105 - 1510123 + g 93 -12.4 -2.92935 | opp_overlap 1510103, overlap 1510103 1510095 ACGATGTTTACAATT CGGCGGTG CCA TACCGCCG TAATTTGAAGCTTCT APJL_1374 1510528 - 1511490 + | putative sodium/calcium exchange protein TERM 2451 1511566 - 1511509 - T 100 -15.9 -4.87892 | gap 1, opp_overlap 1511510 1511513, overlap 1511510 GCCGAATAAAATAAA TCAAGCGGTCGTTTTTCTTGGAGACTTT GCA AAAATCTTCG-GAAAAACGACCGCTTGT TTTAACGTACCGTTT TERM 2452 1511510 - 1511565 + T 100 -21.6 -4.14511 | gap 1, opp_overlap 1511509 1511510, overlap 1511513 CCGAATAAAATAAAT CAAGCGGTCGTTTTTCTTGGAGACTTT GCA AAAATCTTCG-GAAAAACGACCGCTTG TTTTAACGTACCGTT TERM 2453 1511565 - 1511510 - T 100 -19.4 -3.5165 | gap 1, opp_overlap 1511510 1511513, overlap 1511509 CCGAATAAAATAAAT CAAGCGGTCGTTTTTCTTGGAGACTTT GCA AAAATCTTCG-GAAAAACGACCGCTTG TTTTAACGTACCGTT TERM 2454 1511513 - 1511562 + T 100 -17.5 -4.19746 | gap 1, opp_overlap 1511510 1511509, overlap 1511510 AATAAAATAAATCAA GCGGTCGTTTTTCTTGGAGACTTT GCA AAAATCTTCG-GAAAAACGACCGC TTGTTTTAACGTACC APJL_1375 1511861 - 1511568 - | transcriptional regulator TERM 2455 1511657 - 1511642 - G 77 -10.4 -3.11178 | CAAGCAACTTTAATA CCGTCG CCAA CGACGG ATTAACCGAGCCTTT APJL_1376 1512213 - 1511842 - | hypothetical protein TERM 2456 1512355 - 1512341 - H 75 -10 -2.76696 | opp_overlap 1512340 1512333, overlap 1512340 1512343 TTTTGCTGTAAGAAG CAGGCA TTT TGCCTG ACCTTACTTATTTAT TERM 2457 1513379 - 1513395 + G 76 -10.8 -2.62255 | overlap 1513378 1513390 TCGCCTTGTACTTCG GCGCCG TTATC CGGCGC ATTGCTGTATGTTGC dsbD 1512443 - 1514158 + | thiol:disulfide interchange protein precursor TERM 2458 1514164 - 1514188 + F 93 -6.4 -5.5112 | overlap 1514165 TCAGTTATAATCTCA CGGCACAAGT TGATC GCTTGTGCCA TTTTTTATTAATCAC TERM 2459 1514165 - 1514187 + F 85 -9.9 -3.89587 | overlap 1514164 CAGTTATAATCTCAC GGCACAAGT TGATC GCTTGTGCC ATTTTTTATTAATCA APJL_1378 1514216 - 1514785 + | hypothetical protein TERM 2460 1514788 - 1514826 + T 100 -12 -4.48987 | opp_overlap 1514790 1514793, overlap 1514790 1514793 GGCGAGAATCTAACA AATAAGCGGTTAAATTTT TAG GAAATTTAACCGCTTGTA TTTTAGTTATCGGAA TERM 2461 1514790 - 1514824 + T 100 -14.6 -3.85296 | opp_overlap 1514790 1514793, overlap 1514788 1514793 CGAGAATCTAACAAA TAAGCGGTTAAATTTT TAG GAAATTTAACCGCTTG TATTTTAGTTATCGG TERM 2462 1514824 - 1514790 - T 91 -11.7 -4.27467 | opp_overlap 1514788 1514790 1514793, overlap 1514793 CGAGAATCTAACAAA TAAGCGGTTAAATTT TTAGG AAATTTAACCGCTTG TATTTTAGTTATCGG TERM 2463 1514793 - 1514821 + T 100 -14.1 -4.03665 | opp_overlap 1514790 1514793, overlap 1514790 1514788 GAATCTAACAAATAA GCGGTTAAATTTT TAG GAAATTTAACCGC TTGTATTTTAGTTAT TERM 2464 1514821 - 1514793 - T 100 -13.4 -4.2416 | opp_overlap 1514793 1514790 1514788, overlap 1514790 GAATCTAACAAATAA GCGGTTAAATTT TTAGG AAATTTAACCGC TTGTATTTTAGTTAT APJL_1379 1515683 - 1514829 - | hypothetical protein TERM 2465 1515531 - 1515516 - G 75 -3.2 -5.15969 | GTGTAAGGCAAAAAA CGGTTT TTTG ATACCG TAATGGCTAAGTAAT TERM 2466 1515826 - 1515841 + GH 89 -6.2 -5.40072 | CGCTTTTTCTTTCTG CTTGTA CCGG TACAAG TTTTTTTGAAAACCC APJL_1380 1515756 - 1517504 + | hypothetical protein TERM 2467 1517508 - 1517522 + G 77 -8.6 -4.07568 | opp_overlap 1517496 1517507 AACGCTAACTAAACG TTCGCA AGG TGCGAA TTTTGAACAAAAAGC TERM 2468 1517734 - 1517719 - g 81 -5.4 -5.24551 | gap 1, opp_overlap 1517729 1517731 CGAAAGCAACAAAAA TGGCTGG ACG CC-GCCA ATATGTGGCTGTTTA TERM 2469 1517825 - 1517837 + G 84 -6.3 -5.07053 | opp_overlap 1517815, overlap 1517831 GAAATGATCCGCCTC TTTGG ATC CCAAA TTTTTTAGGATAGTT APJL_1381 1517479 - 1517850 + | hypothetical protein APJL_1382 1517859 - 1518437 + | phosphoheptose isomerase TERM 2470 1518962 - 1518929 - g 71 -6.9 -4.21462 | gap 1, opp_overlap 1518917 1518915, overlap 1518919 AGTCATTACCGAAAA CGGTGA-AGTCTTC TTAATCG GAAAACTCTCACCG GCACAAGCGGATGCC TERM 2471 1519037 - 1519017 - g 73 -5.6 -4.41348 | CGCGGGGTAAATAAA GTAATTAA AGTGA TTAATTAC GTACAATAACCGATA APJL_1383 1518459 - 1519046 + | hypothetical protein TERM 2472 1519060 - 1519079 + T 100 -12.2 -5.40072 | opp_overlap 1519060 AACCGATATGAAAAA CCGCCTTT AACA AAAGGCGG TTTTTTTACAAAAAA TERM 2473 1519079 - 1519060 - T 100 -12.2 -4.82154 | opp_overlap 1519060 AACCGATATGAAAAA CCGCCTTT AACA AAAGGCGG TTTTTTTACAAAAAA TERM 2474 1519107 - 1519095 - T 70 -2.7 -5.24129 | TTTTTTTACAAAAAA CAAAT GAA ATTCG ACCGCTTACTATTCC APJL_1384 1520565 - 1519258 - | hypothetical protein TERM 2475 1520241 - 1520226 - G 71 -6.8 -4.09739 | opp_overlap 1520235, overlap 1520235 TTAAGCGTTGTAAAA TCGGCA ATAC CGCCGA ACCGGCAGGTATGAT TERM 2476 1520249 - 1520235 - G 72 -9.2 -3.09518 | opp_overlap 1520235, overlap 1520226 GTAAAATCGGCAATA CCGCCG AAC CGGCAG GTATGATCAAATCAC TERM 2477 1520289 - 1520301 + g 89 -6.9 -5.36441 | opp_overlap 1520289 CCGACAGTTTATAAG GGCGG TTA CTGCC TTTTTTATATACGAC TERM 2478 1521480 - 1521430 - R 95 -7.1 -5.25735 | gap 1, opp_overlap 1521430 1521448 TTAAAAAAGTAAAAA GCGGTCATTTTCGGA-TCACTATT TTGC AATAGTTTCTCTAAAAATGACCGC TTATCTATTAAAGCA ccmF 1523445 - 1521496 - | cytochrome c-type biogenesis protein ccmE 1523990 - 1523445 - | cytochrome c-type biogenesis protein CcmE TERM 2479 1523540 - 1523552 + g 79 -7.7 -4.40882 | CTTCGGAAATACCTG CAGCA CCA TGCTG TTCTTTTAATTTATC TERM 2480 1524025 - 1524009 - R 81 -8.7 -4.10429 | AATCACCTTCTAAAA GTATGCC GAC GGCACAC AATATTAAATAATCG ccmD 1524371 - 1524174 - | heme exporter protein D ccmC 1525115 - 1524384 - | cytochrome c-type biogenesis protein TERM 2481 1525148 - 1525138 - R 78 -4 -5.42265 | CCAAATTACAAAAAA GATT AAA AATC TCACCGCTTTTCATT ccmB 1525828 - 1525166 - | cytochrome c-type biogenesis protein ccmA2 1526460 - 1525825 - | cytochrome c biogenesis protein CcmA yfgE 1527311 - 1526601 - | DNA replication initiation factor TERM 2482 1527522 - 1527482 - H 100 -13.6 -4.4874 | gap 1, opp_overlap 1527482 1527489, overlap 1527489 GCTAAAAAGCCAAAA GCAA-AAACCCCGTAGTTA TCGC TAACCACAGGGTTTCTTGC TTCGTTTTCGCTTTC TERM 2483 1527482 - 1527522 + H 81 -9.2 -3.73399 | gap 1, opp_overlap 1527482 1527489, overlap 1527489 GCTAAAAAGCCAAAA GCAA-AAACCCCGTAGTTA TCGC TAACCACAGGGTTTCTTGC TTCGTTTTCGCTTTC TERM 2484 1527489 - 1527514 + H 73 -6.1 -4.37247 | opp_overlap 1527489 1527482, overlap 1527482 AGCCAAAAGCAAAAA CCCCGTAGTTA TCGC TAACCACAGGG TTTCTTGCTTCGTTT TERM 2485 1527514 - 1527489 - H 100 -10.5 -5.10154 | opp_overlap 1527482 1527489, overlap 1527482 AGCCAAAAGCAAAAA CCCCGTAGTTA TCGC TAACCACAGGG TTTCTTGCTTCGTTT TERM 2486 1527730 - 1527756 + H 76 -2.2 -5.57729 | TTTTCTTCTTAAATT CGAAACAAGCCG TCA CTGATTTTTTCG TTTTTTGTCTTCTTT TERM 2487 1529434 - 1529448 + H 73 -5.7 -4.58213 | TGGTCTTCCGGCGAA CGAGT TTTTC ACTCG TTTTATCGTTACTTA TERM 2488 1531207 - 1531219 + H 82 -7.7 -4.52347 | GACCCAAAAGGATGC CGGAT TAT ATCCG TTTTCGTCTTCTTTC TERM 2489 1531312 - 1531295 - H 70 -9.1 -3.07291 | opp_overlap 1531295 AAGGAGGTGATCCAA CCGCAGG TTCC CCTACGG TTACCTTGTTACGAC TERM 2490 1533060 - 1533015 - H 81 -2.6 -5.72254 | gap 1, overlap 1533018 TTAAAGAACAAAAAA GAACGACGCACTG-CATTTAC TTCTC GTTCACAACAGTGCGTCGTTG TGTGGGATGCATTAT TERM 2491 1533057 - 1533018 - H 71 -4.3 -4.86954 | gap 1, overlap 1533015 AAGAACAAAAAAGAA CGACGCACTG-CATTTAC TTCTC GTTCACAACAGTGCGTCG TTGTGTGGGATGCAT TERM 2492 1533165 - 1533195 + H 71 -8.6 -3.28368 | ACAATTCGAGTGTTT TTTATTACTTTTCT GAT AAAAAAGTAATAAA TCTTATAAGTTAGCT TERM 2493 1533698 - 1533682 - g 91 -6.5 -5.45802 | TTGTGAAAAGAAAAA TTGGGGC AAT GCCTCAA AAGGGATCTCTGAGA APJL_1392 1533305 - 1534138 + | hypothetical protein APJL_1393 1534313 - 1534579 + | oxaloacetate decarboxylase subunit gamma TERM 2494 1534835 - 1534820 - g 84 -2.6 -5.63103 | gap 1 CGTGAATTAAAAAAA GCG-ATT CCG AATACGC CGTTACAAATGTTAC TERM 2495 1535599 - 1535573 - g 74 -9.5 -3.29829 | gap 1 GATATTGTGTTACAA GAGATCC-CGCG CGTC CGCGAAGATCTC GGTAACATCCCGCTT oadA 1534595 - 1536397 + | pyruvate carboxylase subunit B TERM 2496 1536815 - 1536827 + G 71 -9.1 -3.31691 | overlap 1536809 AGTGGCGATTGGCTA CGGTG TTG CACCG TTAATCATCTTTATG oadB 1536414 - 1537718 + | oxaloacetate decarboxylase beta chain TERM 2497 1537736 - 1537793 + F 100 -13.1 -4.89393 | gap 1, opp_overlap 1537740, overlap 1537737 1537740 GCTATATTTACATCA TTAAGCGGTCGTTTTTGAGGA-AATTTT TGC AAATTTATCTTCAAAACCGACCGCTTAC TTTTTATGGCGTTTC TERM 2498 1537737 - 1537792 + F 100 -16.6 -3.52551 | gap 1, opp_overlap 1537740, overlap 1537736 1537740 CTATATTTACATCAT TAAGCGGTCGTTTTTGAGGA-AATTTT TGC AAATTTATCTTCAAAACCGACCGCTTA CTTTTTATGGCGTTT TERM 2499 1537789 - 1537740 - f 84 -11.7 -3.25223 | gap 1, opp_overlap 1537737 1537736 1537740 TATTTACATCATTAA GCGGTCGTTTTTGAGGA-AATTTT TGC AAATTTATCTTCAAAACCGACCGC TTACTTTTTATGGCG TERM 2500 1537740 - 1537789 + F 100 -13.9 -3.88001 | gap 1, opp_overlap 1537740, overlap 1537737 1537736 TATTTACATCATTAA GCGGTCGTTTTTGAGGA-AATTTT TGC AAATTTATCTTCAAAACCGACCGC TTACTTTTTATGGCG phnA 1537851 - 1538174 + | alkylphosphonate uptake protein TERM 2501 1538203 - 1538220 + F 100 -9.1 -5.38326 | opp_overlap 1538203 TCGACTCATTTTAAA CGCTCAC TTCG GTGGGCG TTTTTCTTTCATTGC TERM 2502 1538379 - 1538390 + G 72 -7.2 -4.00465 | TCGGCAATTGCCGCC GCCG GCAT CGGC TATTTTTCACTTGTG mauG 1538346 - 1539746 + | cytochrome c peroxidase TERM 2503 1539752 - 1539738 - T 85 -7.2 -4.93547 | CTAACTAATGAAAAA GTGAAA TAA TTTCAC ATAAACAAGCGGTGG TERM 2504 1539800 - 1539761 - T 100 -20.2 -4.15029 | opp_overlap 1539761 ATTTCACATAAACAA GCGGTGGGATTTCTGCAA AATT TTGCAAACATCCCACCGC TTTCTATTTATTCAC TERM 2505 1539761 - 1539800 + T 100 -18 -4.46072 | opp_overlap 1539761 ATTTCACATAAACAA GCGGTGGGATTTCTGCAA AATT TTGCAAACATCCCACCGC TTTCTATTTATTCAC APJL_1398 1540108 - 1539812 - | hypothetical protein TERM 2506 1540082 - 1540060 - G 89 -6.3 -5.40072 | gap 1, opp_overlap 1540060 1540079 TCGGCTGTAAAAAAA TCCGCA-GGC GGAT GCCGTACGGA TTTTCAATACGTTCT APJL_1399 1540643 - 1540110 - | integral membrane protein TERM 2507 1540712 - 1540750 + r 89 -11.9 -3.35798 | opp_overlap 1540693 1540691 1540712, overlap 1540721 CCCTCATGATAGAAA GCGGTCGGATTTTGCAA TTTTT TTGCAAAATTTAACCGC TTGTCGCTAAAGCAT TERM 2508 1540750 - 1540712 - R 86 -9.7 -4.08706 | opp_overlap 1540712 1540721, overlap 1540693 1540691 CCCTCATGATAGAAA GCGGTCGGATTTTGCAA TTTTT TTGCAAAATTTAACCGC TTGTCGCTAAAGCAT APJL_1400 1541106 - 1540765 - | hypothetical protein APJL_1401 1541914 - 1541162 - | tRNA (guanine-N(7))-methyltransferase fabH 1542912 - 1541962 - | 3-oxoacyl-(acyl carrier protein) synthase III plsX 1543958 - 1542924 - | putative glycerol-3-phosphate acyltransferase PlsX TERM 2509 1543923 - 1543906 - G 93 -12.7 -3.19602 | overlap 1543904 GCCGGGATAGTAATA CGGGGAC CAAA GTCCCCG CCCATCACATCTAAC APJL_1404 1544153 - 1543983 - | 50S ribosomal protein L32 APJL_1405 1544695 - 1544171 - | hypothetical protein TERM 2510 1544641 - 1544653 + g 80 -9.1 -4.06678 | CTTCGTAATCCATTC GACGC TGA GCGTC TTTATATGGGTCAAT TERM 2511 1545042 - 1545014 - g 80 -4.6 -5.24531 | opp_overlap 1545013 1545014 1545035 1545038 1545040 ACCGGTGATAAAAAA CCGAATCTTAAA GCGGT TTTTGGATTCGG CTTACTTGCCGTATT APJL_1406 1544915 - 1545706 + | inner membrane protein APJL_1407 1545802 - 1547064 + | hypothetical protein TERM 2512 1547118 - 1547081 - f 100 -15.8 -3.48276 | opp_overlap 1547081 CCTCGTCTTATACAA GCGGTGGAATTTGCAA AAAATG TTGTAAATTCCACCGC TTTTTTATTAACCAG TERM 2513 1547081 - 1547118 + F 100 -18 -5.4505 | opp_overlap 1547081 CCTCGTCTTATACAA GCGGTGGAATTTGCAA AAAATG TTGTAAATTCCACCGC TTTTTTATTAACCAG TERM 2514 1547246 - 1547232 - f 83 -5.8 -5.10064 | opp_overlap 1547234 1547238, overlap 1547226 CCTAACAGATAAAAA TAGTTT TTT AAACTA AATTATCAACATAAA TERM 2515 1547671 - 1547683 + G 74 -6.2 -4.41616 | GGGCATCGTCACCGT GCGG CGGCT CCGC TTTCTTTCCGCCGCT TERM 2516 1547778 - 1547791 + G 74 -8.1 -3.95555 | TTATGCCGTCGTACT CGGCT GGGC AGCCG TTTATACCTACTTCT TERM 2517 1548282 - 1548295 + G 70 -9.5 -2.84126 | opp_overlap 1548281, overlap 1548281 1548274 GGTATTGGCAGGAAT CGGCG TATT CGCCG CTTTAGGCTTTATGG APJL_1408 1547443 - 1548957 + | SNF family Na(+)-dependent transporter APJL_1409 1548968 - 1549060 + | hypothetical protein TERM 2518 1549081 - 1549125 + F 91 -11.7 -3.75571 | opp_overlap 1549085 1549089, overlap 1549089 TCATATCTATATCTT CAAACGAATACCGTTATTCCT TAT AAGAATAGCGGTATTTTTTTG TGTTTTACTCACTTC TERM 2519 1549117 - 1549089 - f 80 -9.7 -3.52472 | opp_overlap 1549081 1549089, overlap 1549085 ATATCTTCAAACGAA TACCGTTATTCCT TAT AAGAATAGCGGTA TTTTTTTGTGTTTTA TERM 2520 1549089 - 1549117 + F 100 -9.7 -5.9362 | opp_overlap 1549089 1549085, overlap 1549081 ATATCTTCAAACGAA TACCGTTATTCCT TAT AAGAATAGCGGTA TTTTTTTGTGTTTTA TERM 2521 1550230 - 1550220 - g 74 -4 -5.0133 | GATGCCTTCAAAAAA TTAG ACG CTAA AGGCATTGAGCTGGA APJL_1410 1549344 - 1550315 + | phosphotransferase system enzyme II,mannose-specific, factor IIAB TERM 2522 1550485 - 1550470 - g 75 -6 -4.65895 | opp_overlap 1550470 TGGGTGATGTAAAAA CCGGCG TTAT CGTCGG CGGTTCTCTGGAATT APJL_1411 1550328 - 1551128 + | PTS system, mannose-specific IIC component APJL_1412 1551142 - 1551978 + | mannose-specific PTS system protein IID TERM 2523 1551995 - 1552050 + F 90 -7.2 -5.18409 | gap 1, opp_overlap 1551991 1551998 1552027, overlap 1551991 AAATATCTAAACCAC TAAGCGGTCATATTTTTATCAAATTTT GCA AATTTTTGACGAAAA-ATGACCGCTTG TTTCTTTTTATTTTC APJL_1413 1552077 - 1552535 + | hypothetical protein TERM 2524 1552859 - 1552840 - g 86 -7.8 -4.7373 | TCACCCGACTAAAAA CGAAGCCG AGTA CGGATTCG AACAAGAAAATTTAC manA 1552532 - 1553737 + | mannose-6-phosphate isomerase TERM 2525 1553894 - 1553878 - g 100 -9.5 -4.72029 | CTGAAGGCAATAAAA TTCAACC GAC GGTTGAA CATAAATCAGTAACG APJL_1415 1553799 - 1554311 + | hypothetical protein TERM 2526 1554324 - 1554361 + F 100 -7.3 -5.88476 | opp_overlap 1554326, overlap 1554318 TAACTTCTCCGATAG CAGTCGAATTTTT AATTAATTATGC AAAAATTCGACTG TTTTTTATTTATTTT TERM 2527 1554798 - 1554787 - g 78 -5.8 -4.80853 | opp_overlap 1554786, overlap 1554773 AGCGGAAAAAAATAA TCCG CAAG CGGA CGTTTGGTACGGCGG TERM 2528 1555283 - 1555271 - g 71 -4.1 -4.83615 | TATGCGTTAGAAAAA GAACA GGG TGCTC CGCTTGAAATGGTTG afuA1 1554557 - 1555597 + | AfuA protein TERM 2529 1555613 - 1555668 + F 100 -9.8 -5.186 | opp_overlap 1555616 1555649 1555651, overlap 1555649 1555651 1555653 TTATTCGCCTTTTGA TAAGCGGTCGTTTTTCGCAAAAAATT TGCA AAAAATCAGCGAAAAACGACCGCTTG TTTTTCTCTATTTTA TERM 2530 1555665 - 1555616 - f 84 -11.5 -3.28712 | opp_overlap 1555613 1555649 1555651 1555653, overlap 1555649 1555651 TTCGCCTTTTGATAA GCGGTCGTTTTTCGCAAAAAATT TGCA AAAAATCAGCGAAAAACGACCGC TTGTTTTTCTCTATT TERM 2531 1556449 - 1556467 + G 71 -4.5 -4.67755 | TTTAATGCTTGGTCG TTCGGGC TATGT GACCGAA TTTTTAGATACCTAT afuB1 1555703 - 1557766 + | ABC-type thiamine transport system, permease component afuC 1557792 - 1558859 + | ferric transporter ATP-binding subunit TERM 2532 1558923 - 1558946 + T 100 -14.6 -2.7728 | opp_overlap 1558921 CCACTTTAAGATATT GTAGGGCGGG AATA TCCGCCCTAC TCGTTAAGCTTTCAA mpl 1560314 - 1558950 - | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-diaminopimelate ligase TERM 2533 1559425 - 1559389 - G 76 -9.4 -3.46824 | gap 1 GCATTAATGAATGAA CCGAGCGCATCGCAAGC ACCT GCTACCGATACGC-CGG CGTGATGTGCCGCGG fbp 1560437 - 1561441 + | fructose-1,6-bisphosphatase TERM 2534 1561462 - 1561483 + T 100 -8.7 -5.80817 | opp_overlap 1561462 AGATAAAACAAAAAA CCGAACGCT TTAA AACGTTCGG TTTTTTTATATTAAG TERM 2535 1561483 - 1561462 - T 100 -10.9 -5.8901 | opp_overlap 1561462 AGATAAAACAAAAAA CCGAACGCT TTAA AACGTTCGG TTTTTTTATATTAAG APJL_1421 1562385 - 1561597 - | hypothetical protein TERM 2536 1562284 - 1562296 + g 70 -5.5 -4.45485 | opp_overlap 1562284, overlap 1562273 AGGGGCTTTTAAGAA GGCTT TAG GAGCC TTTTCTAAATATCGT TERM 2537 1562573 - 1562535 - R 100 -12.6 -4.64766 | opp_overlap 1562536, overlap 1562536 TTCATATTTCAAAAA GGTAGGTTAAAGCCTTGT ACT ATAAGGCTTTAACCCACT TTTTACCAACCTTTT TERM 2538 1562572 - 1562536 - R 100 -16.1 -3.38378 | opp_overlap 1562536, overlap 1562535 TCATATTTCAAAAAG GTAGGTTAAAGCCTTGT ACT ATAAGGCTTTAACCCAC TTTTTACCAACCTTT TERM 2539 1562536 - 1562572 + r 100 -16.1 -4.58685 | opp_overlap 1562536 1562535 TCATATTTCAAAAAG GTAGGTTAAAGCCTTGT ACT ATAAGGCTTTAACCCAC TTTTTACCAACCTTT TERM 2540 1562632 - 1562613 - R 100 -10 -5.79595 | opp_overlap 1562608 1562613 TGCCAAAACAAAAAA GGCGTGTC TTTC AACACGCC TTCTCTTTTAGCATT TERM 2541 1562613 - 1562632 + r 83 -9.3 -3.97108 | opp_overlap 1562613, overlap 1562608 TGCCAAAACAAAAAA GGCGTGT CTTTCA ACACGCC TTCTCTTTTAGCATT tufB1 1563860 - 1562676 - | elongation factor Tu TERM 2542 1563904 - 1563883 - R 73 -7.2 -4.06419 | opp_overlap 1563883 GCTTCCTAGAAATAA GCCTCTGC CCTATT GCCGAGGC TTTAGTTAAAAGATA TERM 2543 1563883 - 1563904 + r 71 -7.2 -3.90588 | opp_overlap 1563883 GCTTCCTAGAAATAA GCCTCTGC CCTATT GCCGAGGC TTTAGTTAAAAGATA TERM 2544 1565302 - 1565319 + r 83 -7.1 -4.77896 | TTCTTCTTCGGTTAA TTCTTCA CCGC TGAAGAA TTTTTCCATTAATTC TERM 2545 1566110 - 1566072 - R 74 -9.6 -2.96298 | opp_overlap 1566068, overlap 1566071 ATGAGTTTAAATAAG GGTAAGGCTTCATCGCAA ATT TTGTGATGAAGCCCTGCA AGCATATTGCTAAAC rpsG 1566598 - 1566128 - | 30S ribosomal protein S7 rpsL 1567109 - 1566735 - | 30S ribosomal protein S12 TERM 2546 1567174 - 1567151 - R 93 -6.8 -5.52347 | overlap 1567153 AATAAAATTAAAAAA TATCCTTTCA AAGA CGAAAGGACA GTAAATTCTAGTGTT TERM 2547 1567172 - 1567153 - R 75 -7.2 -4.35313 | overlap 1567151 TAAAATTAAAAAATA TCCTTTCA AAGA CGAAAGGA CAGTAAATTCTAGTG rfaC 1568190 - 1567231 - | ADP-heptose:LPS heptosyl transferase I TERM 2548 1567499 - 1567524 + g 74 -6.8 -4.28791 | overlap 1567517 GTCACATTGGTATTC GCTTGCGCCA AACGTA TCGCGCGAGC TTTCTCTTGTGCATT TERM 2549 1568151 - 1568168 + g 73 -5.5 -4.66833 | opp_overlap 1568151 1568153 GCAAAGTATGAATCA CATCCCC CATC GAGGATG TTTTTACAATTAAAA rfaF 1569302 - 1568265 - | ADP-heptose LPS heptosyltransferase TERM 2550 1568416 - 1568394 - G 72 -9.9 -2.84636 | overlap 1568371 1568393 1568396 AATTAAGCGAATAAT CACCGCTTT ATCGG AAAGCGGCG GCGTATATTGCGGGC TERM 2551 1568757 - 1568775 + g 79 -11 -3.07029 | opp_overlap 1568752 CGGGCAGAAGCCGAT TGCCGGAC GCT GTTCGGCA TATTCAAACTGTTTG APJL_1429 1569836 - 1569384 - | hypothetical protein TERM 2552 1569876 - 1569898 + r 74 -9.2 -3.02508 | opp_overlap 1569846 1569876, overlap 1569878 ATATTAAAAGAAAAA GAGCAACG GCTATAG CGTTGCTC TGTGATATTTCTTAT TERM 2553 1569898 - 1569876 - R 100 -9.2 -5.52079 | opp_overlap 1569876 1569878, overlap 1569846 ATATTAAAAGAAAAA GAGCAACG GCTATAG CGTTGCTC TGTGATATTTCTTAT oapA 1571301 - 1569910 - | opacity associated protein A TERM 2554 1571263 - 1571275 + g 71 -9.1 -3.35046 | overlap 1571261 ATTTGCGGACGGCTC GCCGA ATG TCGGC TCTTTACGGAGATGA APJL_1431 1571602 - 1571946 + | DNA uptake protein and related DNA-binding protein TERM 2555 1571964 - 1571952 - f 88 -3.3 -5.88565 | opp_overlap 1571956 GTTAGAATAAAAAAA TCCGC TGA GCCGA CCGTCAATACTCATA psd 1572097 - 1572987 + | phosphatidylserine decarboxylase TERM 2556 1573013 - 1573042 + F 100 -14.5 -3.25378 | opp_overlap 1573018, overlap 1573018 CGTAAAATGTATTTA TAAAAGGCGTAAG GTAA CTTACGCCTTTTG CTTTTCTAAATAAAT TERM 2557 1573037 - 1573018 - f 100 -12.2 -4.43501 | opp_overlap 1573013 1573018 AATGTATTTATAAAA GGCGTAAG GTAA CTTACGCC TTTTGCTTTTCTAAA TERM 2558 1573018 - 1573037 + F 100 -12.2 -4.73108 | opp_overlap 1573018, overlap 1573013 AATGTATTTATAAAA GGCGTAAG GTAA CTTACGCC TTTTGCTTTTCTAAA TERM 2559 1573095 - 1573071 - f 81 -11.6 -2.62263 | ATCTTTCTGATATTA TTCCGATAAG AGAAA CTTATCGGAA GGAAAGCCATGTTTA TERM 2560 1574216 - 1574202 - g 88 -10 -4.18494 | GATTGCGACTTAAAA GGTTGG CGA CCAACC AAAGGTTTAACCGAC TERM 2561 1575051 - 1575037 - g 70 -10 -2.52834 | overlap 1575036 1575046 CATCTTATGAGCAAT TCCAGC AAA GCTGGA CTACAAGCGGTGAGA TERM 2562 1575142 - 1575122 - g 86 -6.9 -5.06414 | opp_overlap 1575122 1575127 TCTGCGGAAGAAAAA TCAATTTGG TAG CCAATTTGA TGATTATGACATTAT APJL_1433 1573104 - 1575446 + | Type I restriction enzyme EcoEI R protein TERM 2563 1575453 - 1575505 + F 73 -6.5 -4.19307 | opp_overlap 1575455, overlap 1575455 1575464 TCTGATTAATTTTAT AAGCGGTTAGATTTTATAAGAAATT TGT AAAATTTTCTAAAATCTGACCGCTC TTTCTCGTTTATATA TERM 2564 1575455 - 1575503 + F 78 -9.1 -3.67823 | opp_overlap 1575455, overlap 1575453 1575464 TGATTAATTTTATAA GCGGTTAGATTTTATAAGAAATT TGT AAAATTTTCTAAAATCTGACCGC TCTTTCTCGTTTATA hsdM 1575530 - 1576999 + | Type I restriction-modification system M subunit APJL_1435 1577008 - 1578003 + | putative DNA binding protein TERM 2565 1578274 - 1578288 + G 70 -7.2 -3.87373 | AAGCTGGAAGG