TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.429316 %AT, 1437897 nt, 9022 terms. Intergenic: 0.483617 %AT, H2T: 176322 nt, 964 terms; T2T: 53930 nt, 689 terms; H2H: 78064 nt, 1097 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|118430835|ref|NC_000854.2| Aeropyrum pernix K1, complete genome (length 1669696) APE_0001 938 - 213 - | hypothetical protein TERM 1 786 - 748 - G 72 -4.6 -4.56607 | overlap 757 758 GCACCAACCACAAAA GATATTAAACTCGCTAAC AAA GTAAGCGAACCCAATAGC TTGCTCGCTTTAACC APE_0002 1276 - 938 - | PadR family transcriptional regulator APE_0004 2174 - 1260 - | hypothetical protein APE_0006.1 2270 - 2836 + | hypothetical protein TERM 2 3523 - 3512 - f 71 -2.2 -4.9181 | opp_overlap 3503 3517, overlap 3503 3505 ATATAAGAGCAAAAA CAGC TCTT GCTA ACAAGTAATATTACA APE_0007.1 3905 - 5440 + | hypothetical protein APE_0009.1 6058 - 5774 - | putative mercury ion binding protein APE_0010.1 7820 - 6213 - | putative amino acid transporter fba 8071 - 8889 + | fructose-bisphosphate aldolase TERM 3 9582 - 9570 - g 72 -9.1 -3.86194 | AATTGTTGTGATAAA GCTGG GAG CCAGC GGATCATACATCCTT APE_0012 8908 - 9840 + | ATP-dependent 6-phosphofructokinase ilvD 9991 - 11652 + | dihydroxy-acid dehydratase APE_0017.1 13907 - 12387 - | carbohydrate kinase APE_0020.1 15319 - 13925 - | putative pyridoxal-dependent decarboxylase APE_0023.1 15909 - 15391 - | hypothetical protein APE_0024.1 16419 - 16021 - | hypothetical protein APE_0025.1 16823 - 16416 - | TrmB family transcriptional regulator TERM 4 16844 - 16864 + H 77 -11.3 -3.23708 | opp_overlap 16844 16843, overlap 16843 16842 TACCCATGATTAAAT TTGTAACTC TCA GAGTTACAA TAGTTTTTCAACACA TERM 5 16864 - 16844 - H 75 -11.3 -2.87527 | opp_overlap 16843 16842 16844, overlap 16843 TACCCATGATTAAAT TTGTAACTC TCA GAGTTACAA TAGTTTTTCAACACA TERM 6 17050 - 17062 + GH 70 -4.7 -4.4767 | TTGAACACGGTTTAC CCGTG CCG CCCGG TTTTGTAGTAACTAC APE_0026 16932 - 18800 + | hypothetical protein APE_0028 18728 - 19384 + | hypothetical protein APE_0031.1 19396 - 20850 + | putative MFS transporter TERM 7 21715 - 21704 - g 75 -5.8 -4.62069 | opp_overlap 21704 TCCTGAGCTGAAAAA GCTG GAGC CAGC TGTCCTACACCCCGA pckA 20910 - 22379 + | phosphoenolpyruvate carboxykinase APE_0035.1 22506 - 23912 + | ABC transporter, substrate binding protein APE_0038.1 23927 - 24823 + | ABC transporter, permease protein APE_0040.1 24838 - 25698 + | ABC transporter, permease protein APE_0043.1 25706 - 26812 + | ABC transporter, ATP binding protein pstS 26994 - 28115 + | phosphate ABC transporter, phosphate binding protein pstC 28128 - 29060 + | phosphate ABC transporter, permease protein pstA 29053 - 29907 + | phosphate ABC transporter, permease protein pstB 29907 - 30668 + | phosphate ABC transporter, ATP binding protein TERM 8 30917 - 30871 - g 77 -10.8 -3.83205 | overlap 30872 30874 ATTCTTCATAGCAAA GTATCAGCCTCTAGGCCCCGAA CTC CTCGAGGCCAAGTCGCTGATAA GAACCTCCTATGATC TERM 9 30916 - 30872 - g 82 -14.3 -2.89602 | overlap 30871 30874 TTCTTCATAGCAAAG TATCAGCCTCTAGGCCCCGAA CTC CTCGAGGCCAAGTCGCTGATA AGAACCTCCTATGAT TERM 10 30914 - 30874 - g 74 -12.5 -2.99871 | overlap 30872 30871 CTTCATAGCAAAGTA TCAGCCTCTAGGCCCCGAA CTC CTCGAGGCCAAGTCGCTGA TAAGAACCTCCTATG APE_0051 30668 - 31273 + | phosphate transport system protein PhoU APE_0052.1 31922 - 31407 - | hypothetical protein APE_0053.1 32877 - 32017 - | fumarylacetoacetate hydrolase family protein TERM 11 33098 - 33078 - R 85 -8.3 -4.58395 | TTGACTTGCTAAAAA GCCTGGA CAGTAAT TCCAGGC ACACCCCAACCAGGC APE_0054.1 33588 - 33058 - | hypothetical protein APE_0055 34966 - 33674 - | hypothetical protein TERM 12 33952 - 33940 - G 77 -7.7 -4.29139 | GGAAAGTCAAAAGAA GAGCA TCA TGCTC TATAACAAGCGAGAG APE_0056.1 35787 - 35035 - | enoyl-CoA hydratase/isomerase family protein TERM 13 37074 - 37063 - g 75 -5.8 -4.71222 | opp_overlap 37062 37063 ATATTAAAACTAAAA CTCC CGCT GGAG GTTGTACTCGAGGGT TERM 14 38891 - 38914 + G 75 -10.4 -3.65902 | gap 1, overlap 38896 TATGTGTAGACTTGG TAGCATCCCCC CTC GGGGGAT-CTA TTTCACTCAGCTCCC TERM 15 38896 - 38910 + G 71 -11.4 -3.27408 | overlap 38891 GTAGACTTGGTAGCA TCCCCC CTC GGGGGA TCTATTTCACTCAGC APE_0057.1 35926 - 40392 + | hypothetical protein APE_0060.1 40405 - 41106 + | hypothetical protein TERM 16 41125 - 41147 + F 75 -7.2 -4.39568 | opp_overlap 41114 41128 AGTATACGCAATGCA TAATTTACAA TAA TTGTAAATTG TTTTGGTGTCTAGCT APE_0061.1 41221 - 42510 + | hypothetical protein APE_0063 42608 - 44086 + | ABC transporter, ATP binding protein APE_0065 44083 - 45018 + | ABC transporter, permease protein APE_0067.1 45034 - 45867 + | ABC transporter, permease protein APE_0067a 45961 - 46422 + | hypothetical protein dut 46629 - 47108 + | deoxyuridine 5'-triphosphate nucleotidohydrolase APE_0070.1 47677 - 47135 - | hypothetical protein APE_0071.1 48599 - 47940 - | hypothetical protein TERM 17 48792 - 48780 - H 76 -7.7 -4.20806 | GAGTTCAAAACTAAA CAGGT TGA ACCTG TCTCCAAGATATTCC APE_0072 49294 - 50331 + | heme exporter protein C APE_0073.1 50407 - 52197 + | hypothetical protein APE_0076.1 53010 - 52159 - | hypothetical protein mogA 53276 - 53791 + | molybdopterin biosynthesis protein MogA APE_0077a 54009 - 53788 - | hypothetical protein TERM 18 53935 - 53961 + g 78 -8 -4.46212 | opp_overlap 53938 CCATACATTTTTTGA GAAGGGCTCGAG ACT TTCAAGCTCTTC TTTTATACTCGCGAG speH 54129 - 54527 + | S-adenosylmethionine decarboxylase proenzyme APE_0080.1 56533 - 54512 - | hypothetical protein APE_0082.1 57759 - 56575 - | hypothetical protein TERM 19 57559 - 57571 + g 80 -4.8 -4.95618 | opp_overlap 57552, overlap 57555 GTAAACATCACCCAG GGAG CCTGC CTCC TTTATTTTTACTGTT APE_0084.1 58536 - 57823 - | NADH dehydrogenase APE_0085.1 59266 - 58607 - | hypothetical protein APE_0085a 59379 - 59825 + | hypothetical protein APE_0086 59910 - 60401 + | thiol peroxidase TERM 20 60419 - 60430 + T 72 -4.4 -4.66609 | opp_overlap 60419 TCTCAGCCTTTAACA GCTT CAAC AAGC TTTTTGGATAGAATG APE_0087.1 60720 - 60406 - | hypothetical protein TERM 21 60806 - 60824 + H 73 -9 -3.64103 | opp_overlap 60799, overlap 60795 60791 ATGTTAAACAGGGTT TGTTTAAC GCT GTTAAACA TTTAAAATCTAGATG TERM 22 61253 - 61263 + G 74 -6.8 -4.30034 | opp_overlap 61246, overlap 61246 TAAGATTAGCGTTTC CAGC AAC GCTG TTTTAATCGAGTTTT APE_0088.1 60867 - 61838 + | hypothetical protein TERM 23 63560 - 63538 - g 95 -13.4 -4.10188 | opp_overlap 63541 63542 63544 GATACTTATAAACAA GGGGGAGCTC GCG GAGCTCCTCC ACAGTAGGACTACCG APE_0089.1 62549 - 63997 + | peptidase APE_0091 64012 - 65361 + | peptidase APE_0092.1 66471 - 65371 - | hypothetical protein APE_0093.1 67616 - 66579 - | hypothetical protein APE_0096.1 67976 - 68473 + | hypothetical protein APE_0097.1 69124 - 68480 - | hypothetical protein TERM 24 69070 - 69044 - G 71 -10.8 -3.63068 | opp_overlap 69044, overlap 69010 69034 69045 GGACACCACGGCAAA GCCCCAGGAGGA CCT TCCTCCCGAGGG ATCTATGCCCGCGTA TERM 25 69069 - 69045 - G 80 -14.3 -2.7752 | opp_overlap 69044, overlap 69010 69034 69044 GACACCACGGCAAAG CCCCAGGAGGA CCT TCCTCCCGAGG GATCTATGCCCGCGT TERM 26 69195 - 69212 + r 71 -2.7 -4.81249 | overlap 69197 CGCTGAATATTTTGA TGTGGAG AAGA CTTCATA TTTTTGAGTTTCGGC APE_0099 72118 - 69239 - | DNA polymerase I TERM 27 69749 - 69770 + g 86 -5.9 -5.06414 | gap 1, overlap 69751 AATAACGATGTCTCC CT-CTTCGGT TAT ACCGAGGTAG TTTTTCTTCAGCCCG TERM 28 73223 - 73244 + G 78 -8.7 -4.18762 | AAGGTATGGTTGTAG CCCTCTACA GGTA TGGAGAGGG TTTTGAATCGCCCTT TERM 29 73612 - 73596 - g 80 -10.1 -3.95787 | CATGAGATGTACAAA CAGCTGC CCG GCAGCCG AGTCGGGCAAAGTCC APE_0101.1 72760 - 74778 + | putative iron-sulfur protein APE_0103.1 75242 - 74775 - | small heat shock protein APE_0104.1 76066 - 75287 - | hypothetical protein fdxA 76192 - 76416 + | ferredoxin APE_0105 76470 - 77261 + | putative GTP-binding protein APE_0106.1 77735 - 77364 - | hypothetical protein herA 79417 - 77777 - | bipolar DNA helicase APE_0109.1 80606 - 79401 - | 5' to 3' nuclease repair protein NurA TERM 30 79880 - 79865 - G 72 -9 -3.85698 | opp_overlap 79865 79863 TCGGCCCTCTACAAA TCTCGG TGCT CCGAGA TGTTTTCGCCACGAA TERM 31 80508 - 80494 - G 85 -11.4 -4.09739 | TCAATTGGTCTAAAA CCCAGG AGG CCTGGG CACATAATAGACTTC APE_0110 83392 - 80633 - | DNA double-strand break repair rad50 ATPase APE_0113 84628 - 83399 - | double-strand break repair protein MRE11 rpl40e 84934 - 84782 - | 50S ribosomal protein L40e fen 86056 - 85004 - | flap endonuclease-1 TERM 32 86517 - 86506 - g 70 -4.4 -4.42806 | TCAGGGTTAAACAAA GGTT CGAC AACC TAGACCTAAGCGACC APE_0116.1 86208 - 86765 + | hypothetical protein APE_0116a 86999 - 87286 + | hypothetical protein TERM 33 87495 - 87509 + T 70 -4.3 -4.4458 | GTCGTAGGCAGGGAG GCATA GGGTA TATGC TTTGTTGTGTGTGTA APE_0117.1 88800 - 87535 - | misacylated tRNAthr hydrolase radA 88998 - 89957 + | DNA repair and recombination protein RadA APE_0121 89933 - 90673 + | hypothetical protein TERM 34 91047 - 91036 - g 71 -7.2 -4.11484 | opp_overlap 91044 GTCAAGGCCCTAAAA CGCG TCTA CGCG CCCCACGGTTTTAAT APE_0122.1 90727 - 91260 + | hypothetical protein TERM 35 91979 - 91959 - g 89 -6.7 -5.03994 | TTCGACATACAAAAA CTTCAGGGG CCC CCCCAGTAG CAGCATGATAGGGGC APE_0124 91264 - 92262 + | hypothetical protein APE_0125.1 92399 - 93850 + | hypothetical protein APE_0126.1 93855 - 94856 + | hypothetical protein TERM 36 95222 - 95234 + GF 70 -4.1 -4.65078 | ACCGTGCTAATCCTC GTACT CAG AGTGC TTTTCTTGAGGCTAT APE_0127 94864 - 95808 + | hypothetical protein APE_0129.1 95774 - 96889 + | hypothetical protein TERM 37 97415 - 97428 + G 72 -9.5 -3.71124 | TTGGCCTGGGACTTT GCCGC TGCA GCGGC TTCTCTCTTCCTCGT APE_0130.1 96896 - 97999 + | hypothetical protein APE_0131.1 98646 - 98101 - | hypothetical protein TERM 38 98343 - 98357 + g 79 -12.8 -3.17794 | overlap 98342 98345 AGCTTATGAGGGCTG CGGGGC TAA GCCCCG TCTTGGTCCTGGATT APE_0132.1 98849 - 99163 + | hypothetical protein etfB 99284 - 100084 + | electron transfer flavoprotein beta-subunit etfA 100104 - 101030 + | electron transfer flavoprotein alpha-subunit APE_0136.1 101126 - 102256 + | hypothetical protein ggt 102380 - 103879 + | gamma-glutamyltranspeptidase TERM 39 104509 - 104479 - g 71 -7.6 -4.03234 | overlap 104489 CGGTGCCGACAGAAA CACCTCAAAATCTA TGA TAGACTATGCGGTG AACGCCGCTTCAACG APE_0140.1 103961 - 104827 + | ATP-dependent universal stress protein TERM 40 104881 - 104857 - f 76 -9.3 -3.79906 | CCACGCCGAGAACAA CCCCACCTC CTATGCT GAGGTGGAG GAGCCTGTGGTGGAA APE_0141.1 104888 - 106090 + | hypothetical protein APE_0142 106321 - 106863 + | DtxR family transcriptional regulator APE_0143.1 107722 - 107051 - | hypothetical protein TERM 41 107676 - 107696 + g 70 -3.9 -4.57341 | CCGACGGTCTCGGTT GTAGACTCC GGC GGATTCCAC TTTTTAGCCCAGCTT APE_0145 107854 - 108594 + | hypothetical protein APE_0146.1 109683 - 108844 - | pyrroline-5-carboxylate reductase APE_0147.1 109785 - 110336 + | hypothetical protein APE_0148.1 110774 - 110340 - | hypothetical protein nth 110845 - 111534 + | endonuclease III APE_0151.1 111498 - 112055 + | hypothetical protein APE_0152.1 112111 - 113343 + | origin recognition complex subunit 2 Orc2 APE_0152a 113367 - 113633 + | hypothetical protein APE_0153.1 114357 - 113611 - | TrmB family transcriptional regulator APE_0154 115851 - 114493 - | hypothetical protein APE_0155.1 116458 - 115928 - | hypothetical protein APE_0156.1 117632 - 116472 - | hypothetical protein TERM 42 117033 - 117022 - G 76 -4.4 -4.84359 | GCAGCCGCAGAAAAA GCTA AAGC TAGC GAAAAAGTAACTACT APE_0157 118445 - 117705 - | hypothetical protein TERM 43 117788 - 117807 + g 70 -4.9 -4.43501 | opp_overlap 117787 117790, overlap 117790 TCTCCGGCAGTATAC CAGGAGG CCTGGC CCCCCTG TTTTCTGCATGAATT APE_0158.1 119148 - 118438 - | hypothetical protein APE_0159 120096 - 119248 - | (S)-2,3-di-O-farnesylgeranylglyceryl synthase lysS 120221 - 121858 + | lysyl-tRNA synthetase APE_0162 122618 - 121827 - | DNA polymerase sliding clamp A APE_0163.1 124152 - 122824 - | hypothetical protein TERM 44 123139 - 123120 - G 71 -7.2 -4.12456 | gap 1 ATACTATTGGCAAAA CAGGGAATC TGG GAT-CCCTG GAAAGAACTATCGGA TERM 45 124338 - 124363 + r 70 -11.1 -2.73483 | gap 1 TACGGATCGCCGCGC CGGCC-AGGCGT GTG ACGCCCAGGCCG TAGTTAGCGTGCAAT APE_0166.1 124954 - 124412 - | ATP:cobalamin adenosyltransferase APE_0167 125249 - 125635 + | hypothetical protein APE_0168.1 126015 - 125632 - | hypothetical protein agt 127291 - 126080 - | alanine glyoxylate transaminase APE_0171.1 128419 - 127388 - | glyceraldehyde-3-phosphate dehydrogenase TERM 46 127774 - 127788 + g 76 -3.5 -4.96848 | TGAACGTTGTTGGCA CTGCT ACGGC GGCAG TTTTTATGTCAAGCC pgk 129679 - 128432 - | phosphoglycerate kinase TERM 47 130394 - 130412 + G 75 -10.3 -3.66178 | ACCTGACGTTCTATT CGTGCCT GTTGG AGGCACG TTTACCGTTAACGCC APE_0176.1 129984 - 130643 + | hypothetical protein moeA 131800 - 130640 - | molybdopterin biosynthesis protein MoeA TERM 48 131278 - 131289 + g 80 -4.4 -4.95155 | GCTCGGAGCCTACGG GCAT CACA ATGC TTTTTATCCTGTACA mobB 132212 - 131790 - | molybdopterin-guanine dinucleotide biosynthesis protein MobB mobA 133085 - 132240 - | molybdopterin-guanine dinucleotide biosynthesis protein MobA rpl38e 133178 - 133381 + | 50S ribosomal protein L38e APE_0181 134653 - 133391 - | putative exonuclease TERM 49 133527 - 133537 + g 76 -6.8 -4.4648 | TCAACCCCATTTACA CTCC TGA GGAG TTTTATAATGCCGCT APE_0182.1 134836 - 135162 + | hypothetical protein APE_0183.1 135205 - 136005 + | hypothetical protein APE_0184.1 137212 - 135956 - | putative MFS transporter TERM 50 137485 - 137465 - g 71 -10.5 -3.53012 | GCTGCGCCCGTCAAA GTGGTCTTC GTG AAAGACCAC CCACGCCTGCCCACC APE_0187 137399 - 137965 + | hypothetical protein APE_0188.1 137973 - 140066 + | minichromosome maintenance protein hjm 140110 - 142317 + | holliday junction migration helicase APE_0193.1 143373 - 142270 - | L-lysine 6-dehydrogenase APE_0193a 143898 - 143635 - | hypothetical protein TERM 51 144081 - 144061 - H 78 -11.1 -3.54424 | opp_overlap 144055 TCCCACCCGCTGAAA GCTCCTCAC ACC GGGAGGAGC TAGGTCCTCCCGGTT APE_0197.1 144240 - 145007 + | putative HTH-type transcriptional regulator nac 145344 - 144991 - | nascent polypeptide-associated complex protein APE_0199.1 145484 - 146704 + | hypothetical protein APE_0201.1 148433 - 147327 - | hypothetical protein APE_0200 146789 - 147379 + | hypothetical protein TERM 52 147474 - 147453 - Gf 91 -10.9 -4.15044 | gap 1, opp_overlap 147452 147451, overlap 147454 CTGGGCCCTAACAAA CCTCTCCCAG AAG CTGGGAG-GG AGACTCTTTAGGAGC TERM 53 147474 - 147454 - Gf 72 -11.1 -3.08812 | opp_overlap 147452 147451, overlap 147453 TGGGCCCTAACAAAC CTCTCCCAG AAG CTGGGAGGG AGACTCTTTAGGAGC TERM 54 147979 - 147959 - Gf 70 -6.7 -4.06491 | opp_overlap 147958 TGAAGTCGAGATAAA CGGTGTCGG GCT CCCACTCCG CCTTTGAATATACTC APE_0202.1 148526 - 148954 + | hypothetical protein APE_0203.1 149958 - 149164 - | hypothetical protein TERM 55 150275 - 150315 + r 74 -10.3 -3.4252 | gap 1 AACCCCGGACCACGG GGTCCCG-AGTCGGGCGG AGCCTC CCGCCCTCCAGCGGGACC TTCTGCTCCGTACCC kptA 151075 - 150413 - | RNA 2'-phosphotransferase-like protein APE_0207 151135 - 151524 + | hypothetical protein APE_0208 151606 - 152493 + | hypothetical protein APE_0209.1 153625 - 152483 - | peptidase APE_0211.1 154503 - 153667 - | hypothetical protein TERM 56 154913 - 154887 - g 70 -3.7 -4.57837 | gap 2, opp_overlap 154888 154889, overlap 154888 154889 AGAGTGGCTGAAAAA CTCTTCCTTGCGG TAT CCGCCAGG-AG-G CTTGTCGAGGGCGAG APE_0212.1 154581 - 155789 + | peptidase APE_0213.1 156478 - 155786 - | hypothetical protein APE_0214.1 157101 - 156511 - | hypothetical protein APE_0216.1 157667 - 157098 - | putative methyltransferase rpl2p 158482 - 157766 - | 50S ribosomal protein L2P APE_0219 159880 - 158495 - | hypothetical protein APE_0220 161259 - 159901 - | hypothetical protein APE_0220a 161528 - 161265 - | hypothetical protein APE_0222.1 162558 - 161632 - | putative carboxyvinyl-carboxyphosphonate phosphorylmutase TERM 57 162774 - 162800 + H 71 -2.3 -5.00616 | gap 2, overlap 162777 162783 GGGATAGCACAGCTG CGTCTGTAGGCTC TTG GAGCA-ACAG-CG TTTTTTGCACCAGCC APE_0226.1 162954 - 163766 + | hypothetical protein TERM 58 163906 - 163880 - f 78 -5.1 -4.82901 | opp_overlap 163895 163899 CTTTCTGTATAAAAA CGTGGGCC-CGAG ATA CTGGCGGCCC-CG GTCGTTTTGGAAGCG TERM 59 164490 - 164517 + G 74 -11.2 -3.53012 | opp_overlap 164492 164507 ACGTCAGGCTGATAG CAGCCAGCCAGC CAAA GCTTGCTGGCGG TTTGAGCAAGAAGAA rpl3p 164048 - 165082 + | 50S ribosomal protein L3P rpl4lp 165113 - 165931 + | 50S ribosomal protein L4P rpl23p 165928 - 166188 + | 50S ribosomal protein L23P APE_0230.1 167309 - 166380 - | MRP/NBP35 family protein APE_0231 168287 - 167424 - | hypothetical protein APE_0233 169309 - 168287 - | hypothetical protein TERM 60 168499 - 168509 + g 72 -4.6 -4.57569 | CCTCGCTCACCTTAC CGCT AGG GGCG TTTTTGAAAGCCTCG APE_0234 170182 - 169346 - | hypothetical protein thiL 171175 - 170246 - | putative thiamine-monophosphate kinase cobA 172085 - 171336 - | uroporphyrin-III C-methyltransferase APE_0237.1 172755 - 172120 - | hypothetical protein APE_0238 173447 - 173022 - | hypothetical protein APE_0239 173886 - 173560 - | hypothetical protein APE_0240 174555 - 174025 - | hypothetical protein APE_0240a 174775 - 175065 + | hypothetical protein APE_0242.1 175118 - 175429 + | hypothetical protein APE_0243 175883 - 175437 - | hypothetical protein pdxT 176968 - 176357 - | glutamine amidotransferase subunit PdxT pdxS 178026 - 176965 - | pyridoxine biosynthesis protein APE_0248.1 178979 - 178125 - | hypothetical protein APE_0249.1 179131 - 180279 + | hypothetical protein APE_0252 180303 - 181481 + | hypothetical protein APE_0254 181536 - 182243 + | hypothetical protein APE_0255.1 183073 - 182321 - | putative sugar-phosphate nucleotidyl transferase TERM 61 182498 - 182527 + g 88 -10 -4.45083 | overlap 182489 182500 GTCGAAGCTGGTTCC CAGGCCTTCTGC TGCCTC GCGGAAGGCCTC TTTTCTAAATATCGC TERM 62 182500 - 182525 + g 87 -12.6 -3.83188 | overlap 182489 182498 CGAAGCTGGTTCCCA GGCCTTCTGC TGCCTC GCGGAAGGCC TCTTTTCTAAATATC APE_0256 183717 - 183160 - | hypothetical protein rpoE2 183938 - 183720 - | DNA-directed RNA polymerase subunit E rpoE1 184505 - 183945 - | DNA-directed RNA polymerase subunit E' APE_0257a 184744 - 184574 - | hypothetical protein APE_0258.1 185778 - 184846 - | hypothetical protein pyrD 186763 - 185843 - | dihydroorotate dehydrogenase 1B pyrC 188012 - 186735 - | dihydroorotase APE_0262 188063 - 188755 + | hypothetical protein APE_0263.1 190091 - 188799 - | pernisine TERM 63 189512 - 189546 + g 71 -7 -4.10164 | TATCGTTGTCTATGG CGGCTACAGTGCCCGT TAC GTGTGTACCGTGGCCG TTTCTATCCTGGTAG APE_0264.1 191218 - 190586 - | hypothetical protein APE_0265 191705 - 192070 + | hypothetical protein TERM 64 192864 - 192921 + T 83 -9.9 -4.06419 | gap 1, overlap 192866 AGTAGTGTGTACCAT TATCCCTCCGTCCTGGTTAATCGCG-CC TGT GGATGTGATAAGCTGGGACGGGGGAGTA TTGTTTATCGGAAGA TERM 65 192866 - 192918 + T 73 -11.4 -2.77135 | overlap 192864 TAGTGTGTACCATTA TCCCTCCGTCCTGGTTAATCGCG-CC TGT GGATGTGATAAGCTGGGACGG-GGGA GTATTGTTTATCGGA APE_0267 193455 - 193024 - | hypothetical protein TERM 66 195245 - 195220 - g 82 -10.5 -4.22346 | GAAATTCACGGAAAA CCCTGTGCCTA AAGG TAAGCACAAGG GAGAAACAGCCGACG aor 193544 - 195373 + | tungsten-containing aldehyde ferredoxin oxidoreductase TERM 67 196079 - 196101 + F 81 -12.6 -3.14132 | overlap 196096 196097 ATGGCTGGGGGCGGA GGGTCGGCGG TGC CCTCCGGCCC TTCCTCGGGGGCGGG APE_0266a.1 196170 - 196424 + | hypothetical protein APE_0266b 196611 - 196429 - | hypothetical protein modB 197462 - 196677 - | molybdate ABC transporter, permease protein ModB modA 198250 - 197456 - | molybdate ABC transporter, molybdate-binding protein ModA precursor APE_0273 199091 - 198657 - | hypothetical protein APE_0273a 199290 - 199069 - | hypothetical protein APE_0274 199677 - 199327 - | hypothetical protein APE_0274a 200131 - 199916 - | hypothetical protein APE_0275.1 201218 - 200817 - | hypothetical protein APE_0275a 202152 - 201925 - | hypothetical protein APE_0275b.1 202748 - 202422 - | hypothetical protein APE_0276.1 203670 - 203152 - | hypothetical protein APE_0276a 203926 - 203657 - | hypothetical protein APE_0278 204756 - 204280 - | hypothetical protein TERM 68 204605 - 204624 + gr 78 -7.8 -4.36914 | TCTATTTCGTGTAGT GCCTTCTC TGAT GTGAAGGC TTTTATGCCGAGGAC APE_0278a 204920 - 204720 - | hypothetical protein APE_0279.1 205759 - 205301 - | hypothetical protein APE_0279a.1 205952 - 205752 - | hypothetical protein APE_0283.1 206858 - 208840 + | hypothetical protein APE_0283a 209469 - 209347 - | hypothetical protein TERM 69 209780 - 209796 + H 75 -4.3 -4.77438 | overlap 209782 AATGGATCTACGGAG CCGTTGG AAC CCAGCAG TTTTTCATCATAGCT APE_0287 209991 - 210578 + | protogloblin ApPgb APE_0288 210667 - 211257 + | MarR family transcriptional regulator APE_0290.1 211954 - 211409 - | ArsR family transcriptional regulator APE_0290a 212292 - 212077 - | hypothetical protein APE_0291 212566 - 212234 - | truncated thiol peroxidase TERM 70 212578 - 212596 + r 72 -4.6 -4.70353 | GCATTAGATGCTCGA CCAGTA GCTGACG TACTGG TTTTGATTTATTATG APE_0291a 213011 - 212733 - | hypothetical protein APE_0293 213313 - 213008 - | ArsR family transcriptional regulator TERM 71 213514 - 213492 - H 74 -10.8 -3.14132 | overlap 213503 GTTTTGGCGTAGGAA TTTGTATACA ATT TGTATACAAA GTTGGGAAATTGCTA APE_0294.1 213569 - 214009 + | hypothetical protein APE_0295 214838 - 214107 - | hypothetical protein APE_0295a 215152 - 214835 - | hypothetical protein APE_0297 215558 - 215139 - | hypothetical protein APE_0299.1 216021 - 215617 - | hypothetical protein APE_0300.1 217615 - 216356 - | ABC transporter, ATP binding protein APE_0301.1 218590 - 217622 - | ABC transporter, ATP binding protein APE_0302.1 219492 - 218587 - | ABC transporter, permease protein APE_0303 220534 - 219506 - | ABC transporter, permease protein APE_0304.1 222950 - 220551 - | ABC transporter, substrate-binding protein precursor TERM 72 220736 - 220748 + g 78 -7.7 -4.48221 | overlap 220745 TCTGGGGATCCGTTT CAAGC GCT GCTTG TTTTATAAGTTCATC TERM 73 223009 - 223019 + H 74 -2.6 -5.1471 | opp_overlap 223009 CACCTCTATATAAAC TTTT TTG AAAA TTTATTTTTTATAAT APE_0306.1 223391 - 224818 + | putative carbohydrate kinase TERM 74 226045 - 226056 + GF 75 -5.8 -4.56597 | opp_overlap 226044 GGCCTGCTCAGGAAG CCCT ACCT AGGG TTTTTAGGCGGGAAC eapA 224734 - 226164 + | alkyldihydroxyacetonephosphate synthase APE_0309.1 226157 - 227260 + | putative oxidoreductase mcl 227383 - 228213 + | malyl-CoA lyase APE_0313.1 228321 - 228815 + | hypothetical protein APE_0314.1 228879 - 229709 + | D-aminopeptidase DppA APE_0316.1 230375 - 229719 - | hypothetical protein TERM 75 230244 - 230233 - G 75 -3.6 -4.84359 | opp_overlap 230242 CTACCCCTATAAAAA GACC TTAG GGCC CTGAGAGTGGCATAT TERM 76 230463 - 230485 + r 100 -16.2 -2.64616 | GGCCTCCCGTAGGGC GGGGGGCGCC GCT GCCGCCCCCC TCCTATAGCTGGAAG APE_0317.1 232005 - 230611 - | phospho-sugar mutase APE_0319 232765 - 232223 - | protease I TERM 77 232456 - 232481 + g 85 -11.1 -4.02817 | TTATCAGAACCTGGG GTCCGTGGCAA ATCG TAGCCACGGGC TTGTTCTTCTCGAAG TERM 78 232921 - 232946 + r 76 -10.5 -3.36327 | CCTACGTCTAGGCCT GTACGGGGT CCACCTTC ACCCCGTAC TTCTGCCTCCACTCC APE_0320.1 233245 - 232913 - | ferredoxin TERM 79 233368 - 233402 + H 79 -10 -3.78022 | opp_overlap 233380, overlap 233350 CGGAGGGAGGGCTCA CCCGGTATTATAGCCG GGC CGGCTGTAAGATAGGG TTTGGTGGGTCTAGG APE_0321.1 233419 - 233799 + | hypothetical protein APE_0322.1 235661 - 233796 - | putative DNA repair helicase Rad3 APE_0325 235836 - 236171 + | hypothetical protein TERM 80 236290 - 236312 + T 83 -12.7 -3.28712 | TAGGAGCCCTATGCT CAGCCCCCT TGGGC GGGGGGCTG TTGTGGCGGGCCCGC TERM 81 236426 - 236396 - T 72 -11 -3.03124 | CTCTACGGGTTAAGA GCCCGCCGCTCTAC CAG GCTGAGCTACGGGC CCGCTTGTGCCGGGG APE_0326.1 237863 - 236514 - | TATA box-binding protein-interacting protein TIP49 APE_0329.1 238698 - 238201 - | hypothetical protein APE_0330.1 239790 - 238786 - | hypothetical protein dcd 239967 - 240503 + | deoxycytidine triphosphate deaminase APE_0334 240819 - 240475 - | hypothetical protein APE_0336.1 243381 - 240826 - | penicillin acylase II precursor TERM 82 241837 - 241850 + g 72 -9.5 -3.68827 | opp_overlap 241837 241836, overlap 241847 TCCCGTGTTAACAAT CGGGC CGTA GCCCG TTTCAATAGTGGGTA TERM 83 243226 - 243189 - G 100 -14.1 -3.90112 | overlap 243190 CGTCGTCGAAGTAAA CCTTAGCCTCCCCTGGG ATAT CCTCGGGGAGGCTAAGC TCCCCCGATGGCGGG TERM 84 243225 - 243190 - G 90 -17.6 -2.93853 | overlap 243189 GTCGTCGAAGTAAAC CTTAGCCTCCCCTGGG ATAT CCTCGGGGAGGCTAAG CTCCCCCGATGGCGG APE_0337.1 244481 - 243483 - | dipeptidase APE_0338.1 244578 - 245948 + | hypothetical protein APE_0339.1 247036 - 245945 - | hypothetical protein APE_0340.1 249266 - 247047 - | hypothetical protein APE_0342.1 250500 - 249451 - | acyl coenzyme A thioester hydrolase rpl15p 251092 - 250616 - | 50S ribosomal protein L15P rpl30p 251585 - 251106 - | 50S ribosomal protein L30P rps5p 252287 - 251631 - | 30S ribosomal protein S5P rpl18p 252960 - 252316 - | 50S ribosomal protein L18P rpl19e 253448 - 252981 - | 50S ribosomal protein L19e TERM 85 253121 - 253135 + g 80 -10 -3.98627 | overlap 253116 CCTGCTTGTCCCTCA GGTACC TCA GGTACC TTCTTATCTTCCTAA rpl32e 253906 - 253469 - | 50S ribosomal protein L32e rpl6p 254454 - 253906 - | 50S ribosomal protein L6P rps8p 254976 - 254575 - | 30S ribosomal protein S8P rps14P 255157 - 254993 - | 30S ribosomal protein S14P rpl5p 255756 - 255178 - | 50S ribosomal protein L5P rps4e 256514 - 255753 - | 30S ribosomal protein S4e rpl24p 256956 - 256558 - | 50S ribosomal protein L24P rpl14p 257398 - 256976 - | 50S ribosomal protein L14P rps17p 257755 - 257411 - | 30S ribosomal protein S17P rnp1 258057 - 257725 - | ribonuclease P protein component 1 rpl29p 258253 - 258038 - | 50S ribosomal protein L29P rps3p 259013 - 258273 - | 30S ribosomal protein S3P rpl22p 259488 - 259018 - | 50S ribosomal protein L22P rps19p 259949 - 259515 - | 30S ribosomal protein S19P APE_0370 262029 - 260050 - | hypothetical protein APE_0372.1 262897 - 262022 - | hypothetical protein APE_0373 263760 - 263050 - | hypothetical protein ileS 266894 - 263700 - | isoleucyl-tRNA synthetase TERM 86 266960 - 266942 - R 81 -4.4 -5.07652 | CCGTTTAAAATAAAA GCGGGCTA TCA TGGCCTGC GGCCTTGGGGGTGGC APE_0374a 267232 - 266975 - | hypothetical protein APE_0381.1 267395 - 267823 + | hypothetical protein APE_0382 267935 - 268624 + | hypothetical protein APE_0383.1 268733 - 269209 + | hypothetical protein APE_0384 269349 - 270458 + | hypothetical protein APE_0385.1 272096 - 270465 - | acyl-CoA dehydrogenase APE_0389 272759 - 272277 - | putative acetyltransferase APE_0390 273245 - 272766 - | putative acetyltransferase APE_0392 274609 - 273269 - | malate dehydrogenase alkK 276331 - 274664 - | medium-chain-fatty-acid--CoA ligase TERM 87 276072 - 276052 - G 86 -14.7 -3.30771 | TGAGAGGGTGGAGAA CAGCCCCCA TCA TGGGGGCCG CGAAGTAGGTCTCAT APE_0399.1 276826 - 276419 - | hypothetical protein pyrH 277509 - 276832 - | uridylate kinase APE_0401a 277739 - 277987 + | hypothetical protein atpD 278651 - 278016 - | V-type ATP synthase subunit D TERM 88 278700 - 278721 + r 78 -12.3 -2.91452 | gap 1, overlap 278716 AGCATTTGATGCGGA GGGCAGGGCT TCT AGCCC-GCCC TGTACTTCGGGTGGT aptB 280102 - 278711 - | V-type ATP synthase subunit B TERM 89 279031 - 279065 + g 83 -12.3 -3.86346 | gap 1 TCCCGGGGCCTATAC CCTCCTTCATGAGCCT GGAG AGGCTCATG-AGGACG TTTATCGGCGGGTAG atpA 281937 - 280144 - | V-type ATP synthase subunit A atpE 282578 - 281976 - | V-type ATP synthase subunit E atpF 282902 - 282594 - | putative V-type ATP synthase subunit F TERM 90 284082 - 284116 + G 79 -13.4 -3.05384 | opp_overlap 284105 CTGGGGTCATCACGG TCTCCCCGGGGCTGCC TAC GGAAGCCCCTGGGGGC TTCCCTCGGGAACCC APE_0412 283068 - 284156 + | hypothetical protein APE_0413 287510 - 284391 - | hypothetical protein TERM 91 285387 - 285399 + g 73 -3.4 -4.72846 | opp_overlap 285387, overlap 285379 TAGTATCTTAGAAAA TGCT TCTCC AGCA TTTTTCAATGTCTCG APE_0414.1 288069 - 287521 - | hypothetical protein TERM 92 287696 - 287707 + g 74 -2.2 -4.91712 | AAAGCATTGAACCTC GCTT CTAA AGGC TTTTTATAAGTTGAA APE_0415 291639 - 288073 - | hypothetical protein APE_0416.1 294657 - 291643 - | hypothetical protein APE_0416a 295342 - 295518 + | hypothetical protein APE_0416b.1 295745 - 295572 - | hypothetical protein TERM 93 295763 - 295774 + r 76 -3.6 -4.97402 | CTGCCATTGAGTCTC CCCG GCTT TGGG TTTTTCTGGGTTTTG APE_0419 296676 - 295891 - | hypothetical protein APE_0419a 296761 - 297027 + | hypothetical protein APE_0420.1 297083 - 297421 + | hypothetical protein APE_0421 297397 - 298113 + | hypothetical protein APE_0423.1 298839 - 298099 - | putative deoxyribonuclease TERM 94 299031 - 299069 + G 76 -13.1 -3.05384 | gap 1 CCACCCTCTTTCCCC TCGCGGTGGCAGCCCTCT GGGT GGGGGGC-GCCGCCGCCA TTGCCTGGGGGAGGG TERM 95 299172 - 299204 + G 77 -13.3 -2.93723 | overlap 299167 GCGAGGGGGGTCTCC GCTGGGTGGCTGAGG TGT CCCTGGCCACCCTGC TGTGGTTCGTGGCGA APE_0424.1 298919 - 299269 + | hypothetical protein APE_0424a 299318 - 299524 + | hypothetical protein TERM 96 300017 - 300029 + G 71 -10.5 -3.63515 | CAGGAGGACCAGGGA CCCGG TCT CCGGG TTCTTCGCGGTGAAC TERM 97 300521 - 300556 + G 71 -12.6 -2.53012 | gap 1, overlap 300520 CCTCGCAGGCCTCCA CCCCCTCCTAT-CCCAG GCG CTGGGCATCGGAGCGGG CTTCATAGTAAACTT APE_0426.1 299517 - 300602 + | dolichol-phosphate mannosyltransferase TERM 98 300689 - 300727 + GT 86 -12.3 -3.56325 | gap 1 TCCACGCCACGAGGA CCCACGCGGTCCCCGGGG AGGG CCCCGGTGAG-GCGGGGG TTATGGTTGTGGGGG TERM 99 300831 - 300847 + GT 79 -12.3 -2.9914 | GCTCGAGCTCGCCGG CCTCTCC CGG GGAGAGG TGTATATCACGAATG APE_0428.1 303045 - 301243 - | hypothetical protein APE_0427.1 300613 - 301296 + | uracil-DNA glycosylase TERM 100 302910 - 302894 - Gf 77 -10.1 -3.62591 | GCCACAACCTTGAAA CCGCCTC CCG GAGACGG CTTGACACTCAGCGT APE_0429.1 303256 - 303786 + | hypothetical protein APE_0431 303833 - 304396 + | hypothetical protein APE_0433 304387 - 304911 + | hypothetical protein TERM 101 304918 - 304899 - T 77 -10 -3.61517 | ACTGGGGCTCAAGAA GGTCCCCT GGTG AGGAGACC CGCTATAAACACCAG TERM 102 305002 - 304960 - T 76 -11 -3.28745 | opp_overlap 304994, overlap 304955 GTTTTAAGAACGGAA CGCCCGAAGGCGGGGGGCGC GGG GGGCCCGCCGCGCTAGGGGG GTATGAGGCCTAGCT APE_0433a 305171 - 304995 - | small nucleolar RNP protein Nop10p aif2a 306025 - 305192 - | translation initiation factor IF-2 subunit alpha rps27e 306342 - 306121 - | 30S ribosomal protein S27e rpl44e 306646 - 306359 - | 50S ribosomal protein L44e APE_0437.1 307153 - 306674 - | hypothetical protein priA 308147 - 307119 - | DNA primase small subunit APE_0441.1 308907 - 308158 - | DNA polymerase sliding clamp B2 TERM 103 308989 - 308954 - R 76 -11.2 -3.40403 | gap 1, opp_overlap 308987 CGCCGCGGATTATAA GGGGGAGGACGCGCATA AAA CATACAC-CCCTCCCCC TAGCCCCCGGGGTTT APE_0441a.1 309219 - 308989 - | hypothetical protein tfs 309557 - 309201 - | transcription factor S APE_0442a 309918 - 309601 - | hypothetical protein rpoL 310214 - 309915 - | DNA-directed RNA polymerase subunit L APE_0444.1 310859 - 310227 - | hypothetical protein APE_0445 311559 - 310912 - | exosome complex RNA-binding protein Cs14 homologue TERM 104 311349 - 311365 + gr 88 -11.5 -3.8062 | CCACCTCGGAGCCCG GCCCCGG CGT CTGGGGC TTCTTGTGAGGCTTG APE_0446 312190 - 311531 - | hypothetical protein APE_0447.1 313279 - 312215 - | hypothetical protein TERM 105 312994 - 312946 - G 95 -14.4 -3.64198 | gap 1 CCCTCACATACACAA CCCTCCCCCGGGGCTCCAGGCCC TCGT GGGCC-AGCTCCGCGGGGTAGGG GGAGTGGCCCACGTG rpl10e 313902 - 313378 - | 50S ribosomal protein L10e moeA 313995 - 315728 + | molybdopterin biosynthesis protein MoeA APE_0450a 315986 - 315792 - | hypothetical protein APE_0452.1 316764 - 316237 - | hypothetical protein APE_0454 317542 - 316820 - | hypothetical protein APE_0457 317638 - 318996 + | 4-aminobutyrate aminotransferase APE_0459 319673 - 319335 - | hypothetical protein TERM 106 319695 - 319705 + H 72 -5.4 -4.56597 | opp_overlap 319691 CCACCCATAAGCCTG GCTT AGA AAGC TTTTTGAGCCCGGGG APE_0460.1 319751 - 320038 + | hypothetical protein APE_0461 320272 - 320703 + | holliday junction resolvase APE_0462 322241 - 320700 - | ATPase APE_0464.1 322389 - 323228 + | hypothetical protein thiI 324478 - 323288 - | thiamine biosynthesis protein ThiI TERM 107 323966 - 323978 + g 80 -10.5 -4.0162 | CCCCACCGGCAGCCC CCCGG GGC CCGGG TTTATGGTGTCGAAG APE_0468.1 324597 - 325049 + | hypothetical protein APE_0469.1 325165 - 325575 + | hypothetical protein TERM 108 325823 - 325839 + T 82 -9.3 -4.18367 | overlap 325824 GGGCCGGTGTGGTAA GCCCCGG GGG CCGGGGG TTTATCTATGTGATA TERM 109 325824 - 325838 + T 79 -12.8 -3.10297 | overlap 325823 GGCCGGTGTGGTAAG CCCCGG GGG CCGGGG GTTTATCTATGTGAT APE_0470.1 326744 - 325980 - | hypothetical protein APE_0470a 326778 - 327029 + | hypothetical protein APE_0471.1 327993 - 327082 - | ABC transporter, ATP binding protein APE_0471a 328667 - 328347 - | hypothetical protein APE_0471b 328912 - 328673 - | hypothetical protein APE_0471c 329092 - 328922 - | hypothetical protein TERM 110 329091 - 329072 - G 72 -5.8 -4.41309 | opp_overlap 329072 329075, overlap 329068 329084 AAATAATAACATAAA CGATATCA ATAC TGATATCA CTTATCATCAGATAT APE_0472 329651 - 329133 - | hypothetical protein APE_0472a 329833 - 329606 - | hypothetical protein APE_0472b.1 330058 - 329873 - | hypothetical protein APE_0472c 330150 - 330287 + | hypothetical protein APE_0473.1 331263 - 330289 - | hypothetical protein TERM 111 332028 - 332016 - g 75 -9.1 -4.07568 | TGGCTTCGTCGAAAA CCTGG AGC CCAGG GTCAAGAGCAGCCTC APE_0475.1 331447 - 332634 + | origin recognition complex subunit 1 Orc1 APE_0476.1 332708 - 333265 + | hypothetical protein APE_0477.1 333525 - 333223 - | hypothetical protein moaA 334708 - 333605 - | molybdenum cofactor biosynthesis protein MoaA APE_0481.1 335312 - 335016 - | hypothetical protein APE_0482 336677 - 335400 - | hypothetical protein APE_0485.1 336784 - 338289 + | hypothetical protein loxD 339842 - 338421 - | D-lactate dehydrogenase APE_0488.1 340218 - 340775 + | hypothetical protein TERM 112 341773 - 341761 - g 73 -3.3 -4.85599 | overlap 341763 CCGAGCCTACAAAAA GCTGG CGA CTAGC CCCCCGGAGAGGCCC APE_0489 340772 - 342148 + | pyruvate kinase APE_0490.1 342834 - 342145 - | purine phosphoribosyltransferase APE_0492.1 343190 - 343795 + | hypothetical protein APE_0493.1 344771 - 343821 - | hypothetical protein TERM 113 344331 - 344344 + g 78 -3.8 -4.91511 | overlap 344324 ATACACCTCCACACC CCCT ATGGTG AGGG TTTTTGTGATGAAGT rnhB 344887 - 345564 + | ribonuclease HII APE_0498 345570 - 346643 + | hypothetical protein APE_0500.1 346795 - 347679 + | hypothetical protein APE_0502 347685 - 348359 + | ribosome biogenesis protein APE_0503.1 348827 - 348396 - | hypothetical protein APE_0505 349293 - 348883 - | hypothetical protein nfi 350041 - 349385 - | endonuclease V psmB 350760 - 350149 - | proteasome beta subunit precursor TERM 114 350815 - 350827 + H 70 -10.5 -2.81564 | overlap 350814 AATATATTCTTGGGA CCGGC CCG GCCGG GTTTGAGTCACTTTC APE_0508.1 350952 - 351503 + | hypothetical protein TERM 115 352301 - 352287 - g 71 -12.8 -2.62263 | opp_overlap 352282 ACCCTGTGGAGAGGA GGGCGG CGG CCGCCC TCAGGCTATTGGACG APE_0510.1 351593 - 352618 + | putative GTP-binding protein rtcA 353700 - 352615 - | RNA 3'-terminal-phosphate cyclase nadM 354239 - 353721 - | nicotinamide-nucleotide adenylyltransferase APE_0514 354317 - 355375 + | RNA (cytosine-C(5)-)-methyltransferase APE_0516.1 355351 - 355875 + | hypothetical protein TERM 116 356371 - 356358 - g 71 -8.1 -3.96327 | overlap 356359 AGCGTCGAGGACAAA GCCAG GATC CTGGC GGCCAGAGCCCTAGG APE_0517 355875 - 356681 + | FKBP-type peptidyl-prolyl cis-trans isomerase APE_0519.1 357745 - 356687 - | glycerol-1-phosphate dehydrogenase TERM 117 357365 - 357388 + g 70 -12.4 -2.78384 | GAATGGCGATGTTAT CCCGTCGTGG CTAG CCACGGTGGG TATGCTGACGAAAAC psmB 357912 - 358571 + | proteasome beta subunit precursor TERM 118 359723 - 359699 - g 76 -7.2 -4.47328 | gap 2, overlap 359686 AACCTCATGAGAAAA GCTC-A-GGGGG AGC CCCCCTTCGAGC CGAGGGACGTTGAGA APE_0522.1 358808 - 360823 + | putative exonuclease APE_0525.1 361378 - 360842 - | hypothetical protein APE_0525a 361519 - 361752 + | small nucleolar RNP protein Sm rpl37e 361782 - 361970 + | 50S ribosomal protein L37e pepQ 362082 - 363203 + | Xaa-Pro dipeptidase APE_0528 364431 - 363298 - | acetamidase/formamidase TERM 119 364287 - 364301 + g 78 -11.4 -3.6502 | CCGTTATCTGCCCGT CCAGGG CAT CCCTGG TTTCGATAACAACTA APE_0531.1 365389 - 364487 - | ABC transporter, substrate binding protein TERM 120 365416 - 365395 - H 78 -7.9 -4.35116 | gap 1, overlap 365396 365398 TATTCGACACTAAAA CCACCCAGGG AGT CCCAGGG-GG TCTCGCTGGCTCTCG APE_0532.1 365508 - 366251 + | ABC transporter, ATP binding protein APE_0534.1 366299 - 367111 + | ABC transporter, permease protein APE_0535 367104 - 367490 + | hypothetical protein APE_0536.1 368600 - 367617 - | hypothetical protein TERM 121 368752 - 368738 - H 100 -4.2 -5.63236 | opp_overlap 368740, overlap 368740 368745 ACTCAAAAATAAAAA CAGCCA ACG TGGCTT AGTCCTCTGCAGCGG TERM 122 368750 - 368740 - H 75 -6.8 -4.43511 | opp_overlap 368740, overlap 368738 368745 TCAAAAATAAAAACA GCCA ACG TGGC TTAGTCCTCTGCAGC TERM 123 369450 - 369400 - H 74 -7.5 -4.07568 | gap 1, opp_overlap 369400 GCCTTGCCCCCAAAA GTG-ATGCTGTGGATCACGACCTC CTCG GAGGAGGGGAGCCTCAGCATACAC TTTATAATGAAGGCT TERM 124 369400 - 369450 + H 72 -7.5 -3.96327 | gap 1, opp_overlap 369400 GCCTTGCCCCCAAAA GTG-ATGCTGTGGATCACGACCTC CTCG GAGGAGGGGAGCCTCAGCATACAC TTTATAATGAAGGCT TERM 125 370163 - 370135 - g 74 -8 -4.11216 | opp_overlap 370157, overlap 370137 TTGGCATGCTGAAAA CACACCCCCTCT ACAGG AGCGGGGGCGAG GACCTGGTTCCAAGG TERM 126 370161 - 370137 - g 72 -9.2 -3.65542 | opp_overlap 370157, overlap 370135 GGCATGCTGAAAACA CACCCCCTCT ACAGG AGCGGGGGCG AGGACCTGGTTCCAA APE_0537.1 369558 - 370574 + | hypothetical protein rpl13e 370582 - 370857 + | 50S ribosomal protein L13e APE_0540.1 372043 - 370874 - | hypothetical protein APE_0542.1 372386 - 372760 + | hypothetical protein upp 374552 - 373908 - | uracil phosphoribosyltransferase APE_0543 372806 - 373963 + | hypothetical protein TERM 127 374172 - 374156 - Gf 95 -13.7 -3.29144 | GCATCGGGTCTAGAA CGACGGC GGG GCCGTCG AACATGCGGGGTAGC APE_0546.1 374633 - 375946 + | putative pseudouridine synthase PsuX TERM 128 375949 - 375926 - f 74 -11 -3.21099 | opp_overlap 375926 TGGGTGGAGCATGAA GCTCCAGCCG CACC CGGCTAAAGC TAAATTAAGCTGGGC rpl21e 375992 - 376315 + | 50S ribosomal protein L21e rpoF 376358 - 376699 + | DNA-directed RNA polymerase subunit F TERM 129 376844 - 376825 - gf 81 -12.8 -3.25823 | CCCCCGCGACAGGAA GCCCCCCC ACCA GGGGAGGC CGCAGCCCCACATCG TERM 130 377123 - 377103 - gf 77 -8.3 -4.12456 | overlap 377104 AGAGGAGGGTGAAAA GTGTTACCG TCG CGGTAACAT GCCTCCCCGGCCAGG TERM 131 377122 - 377104 - gf 75 -11.8 -3.06991 | overlap 377103 GAGGAGGGTGAAAAG TGTTACCG TCG CGGTAACA TGCCTCCCCGGCCAG APE_0550 376793 - 377773 + | hypothetical protein TERM 132 378068 - 378037 - gf 100 -14.4 -3.28712 | gap 1, opp_overlap 378051 378053 378056 GGGTGGCCGTGATAA CG-GGAGACGGCGTG AGC CACGCCGCCGCCTCG CAGGCGCCGCTGGTA ksgA 377718 - 378551 + | S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase TERM 133 379089 - 379099 + G 84 -6.8 -4.72272 | CCACCAGGATCCTGG CCTC GGA GAGG TTTTTCATGGAGAGG APE_0554.1 378554 - 379144 + | putative methyltransferase APE_0555.1 379132 - 379863 + | hypothetical protein TERM 134 380463 - 380489 + GT 75 -11.5 -3.02511 | CCATGTGCGGGGGAG GGACGGTGGCC GTGGA GGCCGCCCTCC TATTCGAGACGTCGA APE_0557 379829 - 380893 + | putative methyltransferase APE_0558.1 382289 - 380994 - | hypothetical protein TERM 135 381114 - 381126 + g 75 -10.5 -3.64703 | CCTCTCATTCTGGAG CCCCG TCT CGGGG TTTAGGTCGAAGGGG TERM 136 381898 - 381860 - G 84 -15.3 -2.87344 | GAGCGTCGCCATAGA CTATGGAGACCACCCCG TACCC CCGGGCGGCCTCCACAG CATCGACCAGGACGC APE_0560 382374 - 383825 + | hypothetical protein APE_0562.1 384628 - 383822 - | putative prephenate dehydrogenase aroQ 384869 - 384618 - | chorismate mutase aroC 386001 - 384859 - | chorismate synthase TERM 137 385248 - 385228 - G 76 -12.5 -3.14132 | GCTCCCCCTCATGAA GGCGAGGGC GAA GCCCTCCCC GAACTCGACAGCCTT aroA 387274 - 385991 - | 3-phosphoshikimate 1-carboxyvinyltransferase aroK 388104 - 387262 - | shikimate kinase aroE 388925 - 388104 - | shikimate dehydrogenase aroD 389590 - 388922 - | 3-dehydroquinate dehydratase TERM 138 389111 - 389084 - G 76 -13.4 -2.72344 | GCCTAGGGTGAAGGA GGTGGCGAAGCC CCCC GCCTCCGCCACC AGCCTGGCGGCGGCA aroB 390673 - 389597 - | 3-dehydroquinate synthase aroG 391467 - 390655 - | 3-deoxy-7-phosphoheptulonate synthase APE_0583 392455 - 391487 - | putative transketolase C-terminal section TERM 139 391727 - 391753 + g 74 -6.5 -4.50976 | gap 1 AGACCTCTCGGCAGC CTCGAGCACCAG CCTC CTGG-GCGCGGG TTTTATGCTGTAGAC APE_0586.1 393205 - 392495 - | putative transketolase N-terminal section TERM 140 393140 - 393090 - G 70 -11.8 -2.79302 | gap 2 AGCACGGCCAGTATA GGCAGGGCGGTGGTGCTCGAGTGG AGGTG CCACCCGAGC-CCGC-GCCCGGCG AGGATATGGAGCCTC TERM 141 396001 - 395957 - g 82 -13.6 -3.18274 | gap 2, opp_overlap 395963 395996, overlap 395983 GCTAGTCGAACCTAA GCCGCC-CCTCC-CGGAGGTTT ATA AAACCCCCTTGGCGGTGGCGGC CGCTGGAGCGGCAGC APE_0588.1 393471 - 396176 + | hypothetical protein APE_0591.1 397476 - 396676 - | enoyl-CoA hydratase/isomerase family protein TERM 142 397428 - 397448 + g 71 -7.6 -4.08394 | gap 1, opp_overlap 397422, overlap 397432 TGAAAACCAGCCAGC CCAGGGGTG GATC CACCC-TGG TTTTAACCAAACTAT APE_0593.1 398294 - 397737 - | hypothetical protein APE_0594.1 398532 - 399095 + | hypothetical protein APE_0594a.1 399070 - 399348 + | hypothetical protein APE_0595.1 399452 - 400603 + | putative dehydrogenase APE_0596 401341 - 400709 - | hypothetical protein TERM 143 401419 - 401393 - H 74 -5.8 -4.56597 | overlap 401395 401397 GGGGTGCTTTAAAAA CGGAGACTCACA AAT TGTGAGTACCTG GAAGCGCTATTCTAA APE_0597.1 401639 - 401890 + | hypothetical protein TERM 144 401988 - 401977 - T 72 -5.8 -4.30719 | opp_overlap 401986, overlap 401986 CTTTCCTAGAAGAAA GGCT AAAT AGCC GGAATAACCGTCTTC TERM 145 402224 - 402237 + T 73 -9.5 -3.64487 | TGTCTCCGGATTTTC CCGGC TAAC GCCGG TTATTAAACCTCTCG APE_0598 402964 - 402512 - | hypothetical protein TERM 146 402963 - 402936 - G 76 -13.5 -2.85712 | gap 1, overlap 402933 CGAGAGGGATAACTA TG-AGCCCCCGC GGCAG GCGGGGGCTGCA TCTAGGAGCCCCGGG APE_0600 403824 - 403297 - | hypothetical protein TERM 147 403668 - 403684 + gr 75 -11.5 -3.05384 | overlap 403670 TCGCTGCAGCCTCCA GGGGGGC CTC GCCCCTC TTCACTCCGCCCCCC TERM 148 403670 - 403682 + gr 72 -10.5 -3.08679 | overlap 403668 GCTGCAGCCTCCAGG GGGGC CTC GCCCC TCTTCACTCCGCCCC APE_0601 404342 - 403788 - | hypothetical protein APE_0601a 404463 - 404693 + | hypothetical protein TERM 149 404780 - 404737 - g 76 -13.8 -2.77658 | gap 1, overlap 404734 CACTATACTCAAGGA CGCCGCGGGGGCTGAG-AC GGTCAGG GTGCCCTGCCCCCCCGGCG GCGTCACCCTCGGGG APE_0603 404690 - 405439 + | molybdopterin converting factor APE_0604 405857 - 405399 - | hypothetical protein APE_0605.1 406503 - 405916 - | hypothetical protein APE_0606.1 406948 - 406481 - | hypothetical protein TERM 150 407369 - 407356 - R 77 -3.1 -5.03145 | opp_overlap 407345 407344, overlap 407357 TAACGGTTTAAAAAA CCCTT GTAT AAAGG ATTGGCCTGAGCCGC APE_0607 411387 - 407392 - | surface layer-associated protease precursor TERM 151 409926 - 409891 - G 75 -11.8 -3.21416 | gap 1, opp_overlap 409891 409910 409913 CACGTTTATGAGGAA GCTGCCTCCCGCGGCTA TCT TAGCCCCGGG-GGCCAC GCCCCTCAGGCTCGT APE_0609.1 416281 - 411629 - | surface layer protein TERM 152 416385 - 416365 - R 100 -16.1 -3.04144 | overlap 416377 CCCGGAGCCCCAAGA CCCCCCGGG AAA CCCGGGGGA AACCCAGGGGAGCCT TERM 153 416406 - 416388 - R 74 -10.2 -3.54935 | overlap 416377 GAAACCCGGGGGAAA CCCAGGGG AGC CTCCTGGG GAGGCGTGGGCTTCA APE_0614.1 418210 - 416585 - | hypothetical protein APE_0618.1 419557 - 418295 - | hypothetical protein APE_0620.1 425475 - 419623 - | hypothetical protein TERM 154 423964 - 423988 + g 73 -11.3 -3.41051 | TATGGACTGGGGGGC CGGCTTGCCGG AGG CCGGGTAGCCG TTGTCGTCGAGGTAG APE_0620a 425604 - 425870 + | hypothetical protein APE_0621.1 426631 - 425867 - | geranylgeranylglyceryl phosphate synthase-like protein APE_0623.1 426917 - 426579 - | hypothetical protein ahcY 427181 - 428431 + | S-adenosyl-L-homocysteine hydrolase APE_0628.1 428911 - 429201 + | hypothetical protein APE_0630 429341 - 429961 + | hypothetical protein APE_0632.1 431186 - 429927 - | succinyl-diaminopimelate desuccinylase APE_0636 431450 - 432202 + | putative metal dependent hydrolase TERM 155 432246 - 432269 + T 100 -15.2 -3.92592 | overlap 432247 432253 GGACTAGGCTCCGCG ACCCCCCGGC GGGC GCCGGGGGGA TTTACTATTCCAGGT TERM 156 432247 - 432268 + T 100 -18.7 -2.95073 | overlap 432246 432253 GACTAGGCTCCGCGA CCCCCCGGC GGGC GCCGGGGGG ATTTACTATTCCAGG speH 432666 - 432274 - | S-adenosylmethionine decarboxylase proenzyme TERM 157 432688 - 432709 + H 93 -13 -3.62591 | TCTCACCCCCTACTT TGCCCCGG TGTTCT CCGGGGCA TTTAAGGGTTATACG APE_0640 432769 - 433542 + | hypothetical protein APE_0641 434604 - 433555 - | thioredoxin APE_0644.1 434871 - 435854 + | hypothetical protein APE_0648.1 435875 - 436312 + | hypothetical protein TERM 158 436315 - 436354 + T 76 -12.2 -2.67456 | overlap 436314 CGTCAGGCCCTAGAG CCTGGAGAGCCTGGAG CCCAGCTC CTCCAGCCTCTCCAGC ATTATCCTCCTCTCT ppsA 438771 - 436309 - | phosphoenolpyruvate synthase secG 439117 - 438938 - | preprotein translocase SecG subunit APE_0654.1 440357 - 439311 - | hypothetical protein APE_0656.1 441755 - 440385 - | hypothetical protein TERM 159 441434 - 441395 - G 100 -19.5 -3.61517 | gap 1 ACTCCCTGTCAAGAA CCCCGGCTAGAGCCCTCT TGTAC AGA-GACTCTAGCCGGGG CCTGTAGGGGTCTCC APE_0656a 442045 - 441794 - | hypothetical protein APE_0661.1 442140 - 442481 + | hypothetical protein TERM 160 442919 - 442935 + G 88 -13.7 -3.66921 | opp_overlap 442913 TGGACAGTATCGACG CCCTGGG GCT CCCAGGG TTTAGGGTTAGGGTT hisS 442462 - 443769 + | histidyl-tRNA synthetase APE_0663 444116 - 443766 - | hypothetical protein rpiA 444837 - 444124 - | ribose 5-phosphate isomerase TERM 161 445507 - 445529 + H 100 -13.4 -4.06491 | overlap 445490 GCCTAGCCGCGTCCT CGACACGCCC CGG GGCCGTGTCG TTTCTGTGCCGTTGC priB 445535 - 446722 + | putative DNA primase large subunit tenA 447528 - 446854 - | transcriptional activator TenA-like protein APE_0671 447602 - 448753 + | putative MFS transporter mdh 449870 - 448944 - | malate dehydrogenase atpI 450010 - 452067 + | V-type ATP synthase subunit I TERM 162 452155 - 452211 + G 79 -13.7 -3.14132 | gap 1 ATAGATGCCGTGAGG GAGAGGCTGGCCCG-GGAGGGCAG GGACGTCATA CTGCTCTCCACGGGCCAGCCCGGC TTCCTCCCACCCACG aspC 452083 - 453288 + | aspartate aminotransferase APE_0675.1 453668 - 453318 - | tRNA-binding protein TERM 163 453749 - 453774 + r 72 -9.7 -3.31322 | opp_overlap 453749 CCAGGCGACACTGAA CACCCCCGG AAGGGAGC CTGGGGGTG TTGTGAGGAGTTCAG panB 454639 - 453815 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase panE 455590 - 454661 - | 2-dehydropantoate 2-reductase TERM 164 455837 - 455851 + H 70 -4.2 -4.62069 | opp_overlap 455834, overlap 455834 GTGGCCGTAAAACCC CTGGGG GCT CTCTAG TTTTTGAGGTGGACG APE_0680.1 455870 - 456316 + | hypothetical protein APE_0680a.1 456385 - 456681 + | hypothetical protein APE_0681.1 457094 - 456708 - | hypothetical protein APE_0682.1 457605 - 457084 - | hypothetical protein APE_0682a.1 457695 - 457901 + | hypothetical protein APE_0683 457930 - 458598 + | phosphoserine phosphatase APE_0685 458574 - 459086 + | hypothetical protein mtnA 459143 - 460255 + | putative methylthioribose-1-phosphate isomerase APE_0688 461257 - 460283 - | hypothetical protein APE_0689.1 461515 - 462813 + | isocitrate dehydrogenase TERM 165 462932 - 462880 - T 100 -14.9 -4.08767 | gap 4 GCCAGGTCCTCAAAA CGCCCGGGGC-CCAG-GCCC-CCCGGC TCT ACAGGGCGGGCGCCGGAGCCCCG-GCG GCCGCGTAGGCTAGG APE_0691 464341 - 462905 - | hypothetical protein APE_0695.1 465761 - 464346 - | hypothetical protein TERM 166 465271 - 465300 + g 72 -9.1 -3.86524 | AGCCCCTCGGCCAGG GGCTGGGCGAGGC TGAG GCTCCTCCCGGCC TTTCTGGCAAGCTGT APE_0697 466223 - 465795 - | hypothetical protein dys 466315 - 467247 + | putative deoxyhypusine synthase APE_0700 467744 - 467244 - | hypothetical protein TERM 167 467568 - 467558 - G 74 -6.8 -4.34402 | overlap 467537 CGTTCCACACGAAAA GGCT GAT AGCC TCCCTCTCGTTGAGT TERM 168 468013 - 468029 + H 71 -10.9 -2.97747 | TTATCTTTAAATTCT CCGGATA CAA TATCCGG TCTATAATATGGGGG APE_0702.1 468122 - 468535 + | hypothetical protein top6A 469720 - 468551 - | DNA topoisomerase VI subunit A top6B 471445 - 469739 - | DNA topoisomerase VI subunit B TERM 169 471299 - 471323 + g 85 -11.4 -3.9461 | GTAGAGAGCCCTCGT GGGGTTGGCG AAACC CGCCAGCTCC TTGTTCTTCGCGAAG APE_0708.1 471745 - 474039 + | aldehyde dehydrogenase, large subunit APE_0708a 474062 - 474271 + | hypothetical protein TERM 170 474416 - 474442 + G 73 -13 -2.83271 | overlap 474414 TGGCAGGGGAGATTG GGGCTGGTAAGG CGG CCCTATCAGCCC TCCTTGTGGGGCTCG APE_0710.1 474277 - 475143 + | N-glycosylase/DNA lyase menC 476245 - 475118 - | O-succinylbenzoate synthase TERM 171 477399 - 477419 + G 100 -18.3 -2.88999 | opp_overlap 477392, overlap 477401 GCCTAACAGCCTTGT CAGCGGCGG CGG CCGCCGCTG TATGGTATATAGACC TERM 172 477401 - 477417 + G 84 -15.1 -2.99545 | opp_overlap 477392, overlap 477399 CTAACAGCCTTGTCA GCGGCGG CGG CCGCCGC TGTATGGTATATAGA trkH 476501 - 478012 + | Trk system potassium uptake protein TrkH APE_0716.1 478168 - 479115 + | hypothetical protein TERM 173 479230 - 479259 + T 100 -8.5 -5.28176 | gap 1 AGCCGCTTAGGCTAT GACGGAGCGGTGAC CTG GAC-CCGCTACGTC TTTTTTGTCCCTGGA TERM 174 479297 - 479326 + T 100 -14.3 -4.15543 | opp_overlap 479297, overlap 479322 479323 CCCACCCCCCAATTA GTCCTGTAGGCCC ATTT GGGCCTATAGGCC TTTTGGCCATGTTTG TERM 175 479326 - 479297 - T 77 -12.1 -2.71731 | opp_overlap 479297 479322 479323 CCCACCCCCCAATTA GTCCTGTAGGCCC ATTT GGGCCTATAGGCC TTTTGGCCATGTTTG APE_0718 479799 - 479413 - | hypothetical protein APE_0718a 480055 - 479786 - | hypothetical protein APE_0720 480400 - 480059 - | hypothetical protein APE_0720a 480652 - 480407 - | hypothetical protein TERM 176 480625 - 480606 - G 80 -5 -5.00616 | gap 1, overlap 480610 TTCTCCCTCAAAAAA CGCAGAGCC CTA AGCTCT-CG GACGGAAAGCCTGTC APE_0722a 481620 - 481345 - | hypothetical protein APE_0722 480774 - 481433 + | hypothetical protein APE_0722b 482151 - 481978 - | hypothetical protein APE_0722c 482580 - 482257 - | hypothetical protein APE_0725.1 484669 - 482633 - | hypothetical protein APE_0727 485614 - 484760 - | hypothetical protein TERM 177 485758 - 485742 - R 79 -2.2 -5.1861 | opp_overlap 485742 GCTAGCAGGAAAAAA GAGTAG TGCTG CTTCTC TTCTCACGGCTACCT APE_0728 486436 - 485768 - | hypothetical protein TERM 178 486454 - 486417 - G 78 -9.1 -4.15006 | gap 1 ATAGCTATTGCAAAA GCGACTAGTGGGAGCTTC ATG GTAACCCCCTCTAG-CGC GGTTTATGTGAAGCT APE_0728a 486715 - 486458 - | hypothetical protein APE_0728b 486804 - 487088 + | hypothetical protein APE_0730 487541 - 487176 - | hypothetical protein APE_0730a 488331 - 487552 - | hypothetical protein APE_0731 489571 - 488396 - | hypothetical protein APE_0734 489628 - 490233 + | hypothetical protein APE_0735.1 490226 - 490624 + | hypothetical protein APE_0736 490641 - 491384 + | hypothetical protein APE_0737 491368 - 491670 + | hypothetical protein APE_0739 492098 - 493135 + | acyl-CoA dehydrogenase APE_0741 493787 - 493143 - | superoxide dismutase APE_0743 494244 - 493933 - | hypothetical protein TERM 179 496451 - 496436 - g 75 -11.8 -3.18239 | TACAGAGGCCAGCAA CCCGGG GAGG CCCGGG CGTGGATGTGGCCGG APE_0745.1 494656 - 496827 + | hypothetical protein APE_0748.1 496894 - 497982 + | hypothetical protein APE_0748a 498000 - 498335 + | translation initiation factor 1A APE_0751 498332 - 499132 + | hypothetical protein APE_0754.1 499129 - 499716 + | putative RNA-processing protein APE_0756.1 499774 - 500649 + | putative dehydrogenase APE_0759.1 500636 - 501706 + | hypothetical protein APE_0760.1 502217 - 502624 + | hypothetical protein APE_0761.1 502674 - 502949 + | hypothetical protein APE_0762.1 503269 - 503018 - | hypothetical protein TERM 180 504415 - 504429 + G 78 -9.2 -4.03413 | CATGCTGGTATGCAC CCGCCT GAG GGGCGG TTTGTGTAGGGGGCT APE_0763.1 503669 - 504637 + | hypothetical protein APE_0766 505327 - 504608 - | phosphoglycolate phosphatase speE 505445 - 506389 + | spermidine synthase TERM 181 506781 - 506831 + G 70 -11.7 -2.80056 | opp_overlap 506781 506783, overlap 506780 506783 CGAGATGGCCAAGGA GAGGGGCTGGCTGGTAGCCCGCC TCCCC GGCGGGATACTGCCCCGCGTCTC GTTTCCGTGGATGCT APE_0768.1 506419 - 507420 + | bifunctional phosphoglucose/phosphomannose isomerase APE_0771.1 507521 - 508675 + | hypothetical protein APE_0772 508748 - 509086 + | signal recognition particle 19 kDa protein APE_0773.1 509317 - 509676 + | hypothetical protein TERM 182 509905 - 509891 - g 71 -11.4 -3.2178 | overlap 509889 509887 GGAGACTACAATACA CTCGGG CCG CCCGAG GGCTTGGAGGACGCT APE_0774.1 509660 - 510844 + | hypothetical protein APE_0775 511570 - 510839 - | protein-disulfide oxidoreductase APE_0776 511794 - 512183 + | hypothetical protein APE_0777 513100 - 512300 - | serine/threonine protein phosphatase APE_0778 513376 - 514365 + | putative HTH-type transcriptional regulator APE_0781.1 514511 - 515131 + | hypothetical protein TERM 183 515717 - 515695 - gT 70 -4.1 -4.57569 | gap 1, opp_overlap 515703, overlap 515696 515697 GGAGCGTCTCAAAAA CTCCCGTCTC CAAG GAGACCGG-G TTGAGGGTGCTCCTG TERM 184 516007 - 515992 - gT 70 -10.4 -3.25823 | opp_overlap 515992 CTGCTTGGATAGGAA GCCTGG GAGA CCAGGC TTTCCTTGAGGCTAT TERM 185 515992 - 516007 + GT 81 -10.4 -3.91352 | opp_overlap 515992 CTGCTTGGATAGGAA GCCTGG GAGA CCAGGC TTTCCTTGAGGCTAT trm1 515091 - 516314 + | N(2),N(2)-dimethylguanosine tRNA methyltransferase APE_0784.1 516687 - 516322 - | hypothetical protein APE_0785.1 516952 - 518844 + | hypothetical protein TERM 186 519349 - 519320 - g 80 -9.9 -4.16016 | opp_overlap 519321, overlap 519321 519331 GTACCCCCCAAGAAA CCCCCCAGGAAGG GAGC CCCTCGCAGGGGG TCTTCCAGGGGGCGT TERM 187 519349 - 519321 - g 73 -12.3 -3.09288 | opp_overlap 519321, overlap 519320 519331 TACCCCCCAAGAAAC CCCCCAGGAAGGG AGC CCCTCGCAGGGGG TCTTCCAGGGGGCGT APE_0786.1 518996 - 519397 + | small nucleolar RNP protein Gar1p tfb 519505 - 520416 + | putative transcription initiation factor IIB APE_0788.1 520535 - 521128 + | hypothetical protein rps8e 521170 - 521580 + | 30S ribosomal protein S8e APE_0790 522867 - 521974 - | hypothetical protein APE_0791.1 523771 - 522983 - | GTPase TERM 188 524455 - 524472 + H 73 -11.3 -2.61264 | overlap 524454 524458 GTGGGGGCATTGCTC CAAGCCC TGCA GGGCTTG CTTGTAGATGGGAGC TERM 189 525471 - 525455 - g 76 -5 -4.84359 | GCATGTGGATAAAAA CCCCTG ACGAG CCGGGG AAGGTGTATAACGCC aoxA 524923 - 525633 + | cytochrome c oxidase (aa3-type) subunit II aoxB 525646 - 528093 + | cytochrome c oxidase (aa3-type) subunit I+III aoxC 528108 - 528419 + | cytochrome c oxidase (aa3-type) subunit IV APE_0796.1 528673 - 529365 + | putative SCO1 protein APE_0797 529921 - 529343 - | hypothetical protein APE_0798 530002 - 530595 + | hypothetical protein APE_0800.1 531679 - 530597 - | hypothetical protein surE 531813 - 532616 + | 5'(3')-nucleotidase SurE APE_0803.1 533801 - 532575 - | hypothetical protein APE_0805 534953 - 533865 - | tyrosine recombinase XerC/XerD APE_0807.1 535148 - 536770 + | delta-1-pyrroline-5-carboxylate dehydrogenase thrS 536937 - 538352 + | threonyl-tRNA synthetase APE_0812 538405 - 539388 + | hypothetical protein APE_0813.1 539402 - 540478 + | hypothetical protein APE_0815.1 540892 - 541725 + | hypothetical protein APE_0816 541718 - 542284 + | hypothetical protein APE_0816a.1 542666 - 542538 - | hypothetical protein APE_0818.1 542891 - 544132 + | hypothetical protein APE_0818a 544129 - 544380 + | hypothetical protein TERM 190 544442 - 544456 + F 76 -7.8 -4.20712 | GGGTGTGCCTGGGTG GGGGTT AGA GACCCC TTTTCCGGTGTTCTG APE_0820.1 544519 - 544908 + | hypothetical protein APE_0821 544909 - 545889 + | hypothetical protein APE_0824 546649 - 545948 - | hypothetical protein APE_0825.1 547079 - 548005 + | hypothetical protein TERM 191 548447 - 548399 - T 74 -9.7 -3.48593 | gap 1, overlap 548446 TAGGCTCGGAGACAA GGTGTTAGAGAAC-GGTTAGCC TGGGTT GCCTGTCCTGTTCTCTAACACC CTGGAGTCTAGGGTC APE_0826 549350 - 548559 - | hypothetical protein APE_0826a 549567 - 549731 + | hypothetical protein APE_0826b 549704 - 549979 + | hypothetical protein APE_0827.1 549957 - 550436 + | hypothetical protein APE_0830 550445 - 551401 + | hypothetical protein APE_0832.1 551405 - 551809 + | hypothetical protein APE_0833.1 551865 - 552668 + | hypothetical protein APE_0836 552807 - 553472 + | hypothetical protein APE_0837 553499 - 554215 + | hypothetical protein TERM 192 555073 - 555097 + G 74 -11.3 -3.63073 | GACGCCCGGGGCGGC CGTCCTCCTGG AGG CCCGGAGGCCG TTGTTGAGGGGTGTG TERM 193 555233 - 555269 + G 77 -12.2 -3.49653 | gap 1, overlap 555261 555266 GGTTTGGAGGGTGGT GCCGCTGGGCGGCCTGC TGAG GCGGG-TGCCCGGGGGC TTGTGTCCGGGTCCT APE_0840 554231 - 555496 + | hypothetical protein APE_0840a 555521 - 555811 + | hypothetical protein TERM 194 558477 - 558503 + G 79 -13.7 -3.13403 | gap 1, overlap 558475 CGGCCCCCGTGTTTG CCCTGGCC-GCC GCCG GGCTGGCCGGGG TGTTCGTCGCCAGCG APE_0843.1 555824 - 558604 + | hypothetical protein APE_0847.1 558639 - 559010 + | hypothetical protein APE_0848.1 559007 - 559300 + | hypothetical protein APE_0850 559331 - 559648 + | hypothetical protein APE_0850a 559676 - 559942 + | hypothetical protein APE_0852.1 559993 - 561267 + | hypothetical protein APE_0855.1 561264 - 561488 + | hypothetical protein APE_0856 561510 - 562358 + | hypothetical protein APE_0858 562446 - 564050 + | hypothetical protein APE_0859 564324 - 564830 + | hypothetical protein APE_0860 564811 - 565827 + | hypothetical protein APE_0862.1 565904 - 566224 + | hypothetical protein TERM 195 566411 - 566381 - g 74 -13.2 -2.91912 | opp_overlap 566369 GGAGGGATGCAGAGA GGCTCGCCCCCCTT GTT ATGAGGGGCGAGCT GACGGTCTCGGAGGC TERM 196 566636 - 566668 + G 73 -12.5 -2.78596 | CTAAGCGCCGGAGGA GGCGGGGCGGCCGGG AGC CCGGGCAGCCTCCCC TGTGGTGAGAGCATC APE_0864.1 566269 - 566676 + | hypothetical protein APE_0865.1 566712 - 567041 + | hypothetical protein TERM 197 567975 - 567954 - g 75 -8.7 -4.09685 | gap 1, overlap 567955 GTCTACGTGTCAAAA CCGCCGGAGA GGC TCCCCGG-GG AGGCGAGGGACCTGC APE_0867.1 567135 - 568112 + | hypothetical protein APE_0867a 568103 - 568360 + | hypothetical protein TERM 198 568384 - 568362 - f 79 -10.4 -3.78953 | opp_overlap 568365 ACGCCGAGCACTAAA CCCCCCAGGG TCT CCCGGGGTGG ATTCCGAACTTGGCG APE_0867b 568627 - 568878 + | hypothetical protein APE_0870.1 568890 - 569357 + | hypothetical protein APE_0871.1 570364 - 569321 - | hypothetical protein APE_0871a.1 570844 - 571044 + | hypothetical protein APE_0872.1 571041 - 572450 + | DNA (cytosine-5-)-methyltransferase APE_0874.1 573504 - 572452 - | hypothetical protein TERM 199 573570 - 573592 + H 74 -9.8 -3.5511 | overlap 573569 TTTTAACAGGTTTAG GCTTAGCTGG TGT CCAGCTGTGC TCTTTCTGGATAAAG APE_0875.1 573589 - 574260 + | U/G and T/G mismatch-specific DNA glycosylase APE_0878 574307 - 574792 + | hypothetical protein TERM 200 574987 - 574997 + G 76 -6.8 -4.46212 | opp_overlap 574984 574986 574987, overlap 574984 574993 AAAAAGTACAAAGAG GAGG CCG CCTC TTTTATAATAGAGGC APE_0879.1 574798 - 576231 + | hypothetical protein APE_0880 576234 - 577838 + | hypothetical protein APE_0880a 578191 - 577907 - | hypothetical protein APE_0880b 578331 - 578576 + | hypothetical protein APE_0880c 578583 - 578834 + | hypothetical protein APE_0883 578834 - 579262 + | hypothetical protein APE_0883a 579279 - 579509 + | hypothetical protein APE_0883b 579522 - 579803 + | hypothetical protein APE_0883c 579791 - 580021 + | hypothetical protein TERM 201 580095 - 580114 + G 78 -9.2 -4.00756 | overlap 580096 AACGCCTTAACTCCA GCCCAGGC CAAG GCCTGGGA TTATTTGGTGGAATA TERM 202 580096 - 580113 + G 74 -12.7 -2.99972 | overlap 580095 ACGCCTTAACTCCAG CCCAGGC CAAG GCCTGGG ATTATTTGGTGGAAT APE_0885.1 580035 - 580361 + | hypothetical protein APE_0885a 580367 - 580612 + | hypothetical protein APE_0885b 581448 - 581194 - | hypothetical protein APE_0887.1 582673 - 581840 - | mannosyl-3-phosphoglycerate phosphatase mpgs 583872 - 582706 - | mannosyl-3-phosphoglycerate synthase APE_0890 584727 - 584257 - | hypothetical protein APE_0890a.1 585035 - 584796 - | hypothetical protein APE_0891 585788 - 586276 + | hypothetical protein APE_0892.1 586409 - 587476 + | hypothetical protein APE_0895.1 587604 - 588800 + | hypothetical protein APE_0896.1 589628 - 588816 - | hypothetical protein TERM 203 592195 - 592176 - g 72 -8.6 -3.83502 | gap 1 CATCTTCATAGTAAA CCCAG-CGA GCA TCGACTGGG GCTACAATGGCGGAG APE_0898.1 589726 - 592311 + | hypothetical protein APE_0900.1 592653 - 593039 + | hypothetical protein APE_0902 593801 - 593115 - | hypothetical protein APE_0903.1 594001 - 594750 + | misacylated tRNAala hydrolase AlaX APE_0906 594850 - 595206 + | hypothetical protein APE_0907.1 595386 - 597050 + | thermosome alpha subunit APE_0912 597205 - 597987 + | putative dehydrogenase rpoK 598062 - 598373 + | DNA-directed RNA polymerase subunit K ocd 600330 - 599458 - | putative ornithine cyclodeaminase APE_0915.1 598442 - 599509 + | hypothetical protein livK 600515 - 602017 + | branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein precursor TERM 204 602113 - 602089 - f 77 -9.9 -3.57462 | opp_overlap 602090 602107 602110 TATGCTATTTTTAAA CGCCCCCGG GTCATCT CCGCGGGCG GCTGGGTTCGCCTCT livG 602220 - 602984 + | branched-chain amino acid ABC transporter, ATP binding protein livF 602987 - 603700 + | branched-chain amino acid ABC transporter, ATP binding protein livH 603714 - 604778 + | branched-chain amino acid ABC transporter, permease protein TERM 205 605889 - 605873 - g 80 -9.4 -4.12475 | overlap 605883 TATAGAGGAGATAAA GGCCAG GACAG CTGGCC AGACCGGCTCCGAGA livM 604791 - 605954 + | branched-chain amino acid ABC transporter, permease protein APE_0928.1 606207 - 606680 + | hypothetical protein APE_0929.1 606787 - 607980 + | acetyl-CoA acetyltransferase TERM 206 608084 - 608061 - g 79 -13.2 -3.214 | opp_overlap 608065, overlap 608059 CCGAGGAGATGAAGA GGAGCATGGG CCTG CCCATACTCC TAGACCAGAAGACGG APE_0930.1 607994 - 608533 + | hypothetical protein TERM 207 608544 - 608561 + T 74 -2.6 -5.11033 | overlap 608536 608535 GCTGACAGGCTACAC GGGCTC CATGTA GACCCC TTTTTTACAGTTCTC dphB 609422 - 608538 - | diphthine synthase APE_0932.1 610360 - 609398 - | hypothetical protein TERM 208 610475 - 610452 - H 81 -11 -3.57263 | opp_overlap 610440 ATGGGCAGCCCCAAA CCCCCGTG GGCGCGGA CACGGGGG GTGAGGAGGCCTTGT APE_0934 610658 - 611482 + | hypothetical protein APE_0935 612995 - 611982 - | putative glutamate synthase subunit beta APE_0938.1 613826 - 613140 - | hypothetical protein APE_0939 614140 - 613838 - | hypothetical protein APE_0940 615140 - 614127 - | hypothetical protein TERM 209 615087 - 615100 + g 70 -3.7 -4.57073 | TATCAGAACCCTACC CCCCG CCTC CAGGG TTTTTAGGAGGCCTG APE_0941 615984 - 615181 - | spermidine/putrescine ABC transporter, permease protein APE_0943 616758 - 615985 - | spermidine/putrescine ABC transporter, permease protein APE_0944.1 617770 - 616742 - | spermidine/putrescine ABC transporter, ATP binding protein APE_0945.1 619079 - 617865 - | spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein precursor TERM 210 619171 - 619157 - R 71 -3.4 -4.74706 | overlap 619158 GTTAACAGTGAAAAA CCCCGG GGA CCGTGA CACAATATCATGGAG sdhB 620204 - 619287 - | succinate dehydrogenase iron-sulfur subunit TERM 211 619437 - 619455 + g 76 -13.2 -3.05596 | GTTTATCCTCTTCTT GTACAGGC CTA GCCTGTAC TTGAGTAGGAGGCTC TERM 212 619942 - 619965 + g 75 -11.7 -3.23216 | overlap 619943 TGGGCCACCTGGGTC TGGCACGCC AGCCTG GGCGTGCCG TTAATGGTCATGCCG TERM 213 619943 - 619964 + g 71 -13 -2.53715 | overlap 619942 GGGCCACCTGGGTCT GGCACGCC AGCCTG GGCGTGCC GTTAATGGTCATGCC sdhD 620579 - 620226 - | putative succinate dehydrogenase subunit D sdhC 620952 - 620593 - | succinate dehydrogenase subunit C sdhA 622891 - 621140 - | succinate dehydrogenase flavoprotein subunit gcvH 623413 - 622982 - | glycine cleavage system protein H hxlA 623521 - 624243 + | hexulose-6-phosphate synthase APE_0954 624234 - 624947 + | hypothetical protein APE_0954a 624975 - 625256 + | hypothetical protein APE_0955 626217 - 625330 - | voltage-gated potassium channel TERM 214 626264 - 626227 - H 74 -7.7 -4.09864 | opp_overlap 626257 ACTCACTCTTCAAAA GGACCCACCCCCTAT TAGGTGGG ATAGAGGGCTGGCCC GGGGGGTAGGCTGAT TERM 215 626954 - 626985 + G 74 -11.6 -3.54543 | gap 1 ATATCTCGGATGCCG CGCGTAGGCTCCTAG AAT CTAGGGGCCT-CGAG TTTAGGAGGGTGGAT APE_0957 626278 - 627063 + | hypothetical protein APE_0957a 627365 - 627081 - | putative small nucleolar RNP protein Sm ogt 627918 - 627391 - | methylated-DNA-protein-cysteine methyltransferase APE_0960 629115 - 627961 - | hypothetical protein APE_0962 629980 - 629165 - | hypothetical protein APE_0964.1 631010 - 630141 - | hypothetical protein TERM 216 632079 - 632118 + G 70 -12 -2.85668 | TGGGTTCCATGCGGA CTCCCCCGTGTTGGGCGT CGTG GCCTCCTACACGGGGGCG TATCCTCTAGCACTA TERM 217 632190 - 632200 + G 71 -8.2 -4.067 | TCTCTACACCGCGCT CGCC GCA GGCG TTGTTGTTGCTTTCG APE_0965.1 631540 - 632403 + | hypothetical protein APE_0966.1 634603 - 632429 - | hypothetical protein TERM 218 632810 - 632826 + g 71 -11.5 -3.31269 | CTTAATCCCCTCCAT CCCGGGC ACT GCCTGGG TTCGTATCATGTAGA TERM 219 634707 - 634719 + H 73 -9.1 -3.63515 | opp_overlap 634706 634705 CTGTGTCTGGAAACG GAGGG AGG CCCTC TTATTAGCCCTAGAG APE_0969.1 634776 - 635978 + | hypothetical protein APE_0972.1 636199 - 637671 + | sodium/solute symporter APE_0973.1 637739 - 638755 + | hypothetical protein APE_0973a 639105 - 638752 - | hypothetical protein APE_0973b 639257 - 639430 + | hypothetical protein APE_0974.1 639585 - 640484 + | hypothetical protein APE_0975 641381 - 640593 - | hypothetical protein TERM 220 641030 - 641051 + g 72 -8.7 -3.91897 | CTAGAAGCGTTTCAA CCTTCATCC TCGC GGTTGAAGG TTTCTCGGTCAAAAG rpl14e 642008 - 641706 - | 50S ribosomal protein L14e TERM 221 641901 - 641921 + g 70 -11.9 -2.86177 | overlap 641903 GCTCTTAGGCCCGGT GACGAGGAC GAA GTTCTCGTC TATAATATCCACTAT cmk 642577 - 642059 - | cytidylate kinase rpl34e 642846 - 642574 - | 50S ribosomal protein L34e APE_0979.1 644184 - 642889 - | putative amidase APE_0980 644707 - 644279 - | hypothetical protein adkA 645346 - 644738 - | adenylate kinase secY 646722 - 645349 - | preprotein translocase subunit SecY TERM 222 646407 - 646425 + g 76 -3 -4.90381 | overlap 646409 ACTTCCTCCTGCCCT CGGGGTCT GCC AGGTCCAG TTTTATTATCTTAGC TERM 223 646827 - 646792 - H 72 -4.6 -4.62069 | gap 1, opp_overlap 646794 646811 646813, overlap 646793 646794 646796 GTCGGAGGTTAAAAA CTGAGTGTCCCCCCGCT GGC AG-AGGGGCACCCTCTG TATCATACGGCCCGG TERM 224 646811 - 646827 + H 77 -12.3 -2.78384 | opp_overlap 646796 646794 646793 646792, overlap 646794 646813 GTGTCCCCCCGCTGG CAGAGGG GCA CCCTCTG TATCATACGGCCCGG APE_0985.1 647069 - 648070 + | hypothetical protein ribB 648195 - 648911 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase ribC 648886 - 649353 + | riboflavin synthase APE_0989.1 649439 - 650541 + | H/ACA RNA-protein complex component Cbf5p mtaP 650565 - 651299 + | S-methyl-5-thioadenosine phosphorylase TERM 225 651860 - 651837 - g 73 -13.1 -2.70932 | CCTCTCCCTCAAGTA CCCGCCCCC CAGCTC GAGGGCGGG CGTGCTGCTCCTCCT APE_0994 651358 - 652134 + | hypothetical protein APE_0996.1 653442 - 652096 - | glycerate kinase TERM 226 652456 - 652483 + g 79 -13.4 -3.05384 | gap 1 CGTGACGGTTGTCTC GCCTCCCGCCAGC AGG GCTG-CGGGTGGC TTCACTGGCACACCC TERM 227 652892 - 652921 + g 71 -7.7 -4.08144 | CCGAGGACCCTGGCT GGGTAGGCGGTTG CAGC CAGCCTCCCGCCC TTTATCCTTGATAGG APE_0996a 653780 - 653484 - | hypothetical protein TERM 228 653752 - 653718 - G 79 -13.4 -3.05384 | opp_overlap 653718 GGGTTCCCGAGGGAA GCCCCCAGGGGCTTCC GTA GGCAGCCCCGGGGAGA CCGTGATGAACCCAG APE_1000.1 654242 - 653787 - | hypothetical protein TERM 229 654255 - 654279 + r 91 -9.1 -4.61633 | opp_overlap 654244 654248 CAAACCCAGGACCCC CCCGGGGCCAC ATT GGGGGCTCGGG TTTTTAGGGCTGTCT APE_1001.1 655446 - 654283 - | hypothetical protein APE_1003.1 657056 - 655464 - | hypothetical protein TERM 230 657747 - 657709 - g 73 -12.2 -3.05596 | CAGGCCGCTAGGGAA GCCGGGGCTCCGCTCCAC CTG GTGGTGCTGGACCACGGC GGCGGGGGGCCCCTG APE_1007.1 657145 - 658074 + | hypothetical protein APE_1007a 658128 - 658400 + | hypothetical protein APE_1009.1 658938 - 658432 - | hypothetical protein TERM 231 658979 - 658969 - H 74 -8.2 -3.97307 | CTCAGCCAACAACAA CCCC CCA GGGG CGGACCCGCGGCCTC pcm 659066 - 659848 + | protein-L-isoaspartate O-methyltransferase APE_1013.1 660504 - 659992 - | hypothetical protein APE_1014.1 661536 - 660661 - | hypothetical protein leuS 664422 - 661543 - | leucyl-tRNA synthetase TERM 232 661670 - 661646 - G 83 -14.3 -3.07222 | ACCACCACCTTAACA CCCAGCTCCTC CTG GAGTAGCTGGG CAGCGTCCCTCAGGG dapA 664563 - 665474 + | putative dihydrodipicolinate synthase helA 665527 - 666162 + | heme exporter protein A helB 666180 - 666842 + | heme exporter protein B APE_1031.1 668230 - 666839 - | hypothetical protein TERM 233 667250 - 667220 - G 88 -15.5 -3.61715 | opp_overlap 667225 667226 TACGCTGTCGAAGAA CCTGGCGGAGAAC CTCCT GTTCTCGGCCAGG CTCCTCCTGAAGAGG APE_1035.1 669407 - 668268 - | hypothetical protein TERM 234 668504 - 668514 + g 71 -6.8 -4.20368 | CCTCGAGCTCCCTGA GGAC CCT GTCC TTTGTCTTGAGCTCC cdd 669553 - 669963 + | cytidine deaminase APE_1040.1 670032 - 670700 + | hypothetical protein APE_1041 670773 - 671204 + | hypothetical protein APE_1042.1 671680 - 671246 - | hypothetical protein TERM 235 671622 - 671646 + g 79 -12.9 -3.27475 | opp_overlap 671629 671630, overlap 671620 GCCTCGTAGTTCTCC TCCACAAGCTC TAG GAGCTTGAGGA TCTTCTCATCCCCGA APE_1043.1 672843 - 671698 - | putative dehydrogenase TERM 236 672989 - 672977 - H 76 -4.1 -4.92239 | TGAAAAACTCAAAAA CAGCA CAA TACTG ACAATTCCACGATAA APE_1044 673174 - 673923 + | NADH dehydrogenase htpX 674898 - 673939 - | zinc metalloprotease HtpX TERM 237 675745 - 675789 + G 80 -9.2 -4.15565 | gap 1 AGCTGGGCACACTAC CCCTGGCAGCCTCAGCCGCCG CGCT CGGT-GTAGAGGCTGTCGCGG TTTTCGAATCCTACA APE_1047.1 675165 - 676019 + | putative translation initiation factor eIF-2B subunit APE_1049.1 676058 - 677530 + | putative ABC transporter, substrate binding protein APE_1053.1 677527 - 678489 + | putative ABC transporter, permease protein APE_1055.1 678476 - 679225 + | putative ABC transporter, ATP binding protein APE_1056.1 680019 - 679324 - | hypothetical protein TERM 238 680124 - 680147 + r 100 -15.3 -3.64822 | GGCGCACTCCTCCTC GCCCAGCCC GCTGTG GGGCTGGGC TTTCGGTGACGAGGT APE_1059 681249 - 680209 - | tRNA-modifying enzyme TERM 239 681247 - 681262 + g 87 -7.6 -4.74453 | overlap 681241 CAGCCACTTCTCCGG CATACC CTGG GGTATG TTTTTAAGTATGTTC APE_1061.1 682329 - 681316 - | thioredoxin reductase APE_1063 682727 - 682380 - | hypothetical protein APE_1064 683563 - 682835 - | hypothetical protein TERM 240 683081 - 683029 - G 71 -11.2 -3.29144 | gap 1, overlap 683032 CGACGCCGTTTACAA GTAGGGCCAGGGGGTCGCGGTAGGC GTAT GCC-ACCGAAACCCCCTCAACCTCC TCCCCCGCCCCTCCG TERM 241 684586 - 684568 - g 75 -10.2 -3.78934 | overlap 684569 TCGGCGGCATAACAA GGGGCGAC GAG GTCGCCCG CGGGATAGTGGCGGC TERM 242 684585 - 684569 - g 77 -13.7 -2.87146 | overlap 684568 CGGCGGCATAACAAG GGGCGAC GAG GTCGCCC GCGGGATAGTGGCGG sucC 683610 - 684746 + | succinyl-CoA synthetase beta chain sucD 684768 - 685646 + | succinyl-CoA synthetase alpha chain APE_1073 687290 - 685671 - | putative DNA repair helicase APE_1078 687789 - 687298 - | hypothetical protein APE_1080.1 688007 - 688714 + | hypothetical protein APE_1081.1 689794 - 688868 - | signal recognition particle protein pfdA 690344 - 689889 - | prefoldin subunit alpha rplX 690616 - 690350 - | 50S ribosomal protein LX APE_1085 691314 - 690613 - | translation initiation factor IF-6 rpl31e 691721 - 691407 - | 50S ribosomal protein L31e rpl39e 691895 - 691740 - | 50S ribosomal protein L39e APE_1087b 692294 - 691947 - | DNA-binding protein rps19e 692832 - 692371 - | 30S ribosomal protein S19e APE_1091 693161 - 692838 - | hypothetical protein rnp4 693552 - 693061 - | ribonuclease P protein component 4 TERM 243 693206 - 693225 + gr 73 -11.4 -2.55668 | gap 1, opp_overlap 693206, overlap 693206 693218 693220 GCCGGCGGGGATATA GGCGCCCCG CCC CGGGG-GCC CTTCCTGTAGGGGTA TERM 244 693225 - 693206 - GR 75 -11.4 -2.87132 | gap 1, opp_overlap 693206 693206 693218 693220 GCCGGCGGGGATATA GGCGCCCCG CCC CGGGG-GCC CTTCCTGTAGGGGTA APE_1094.1 695335 - 693527 - | ATP-dependent DNA ligase TERM 245 694220 - 694234 + gH 72 -7.8 -4.00124 | CTTGAGCCTCCTGCG CCTCTC GGG GAGGGG TTTGCTTGTGAGGTC TERM 246 695492 - 695522 + H 90 -14.6 -2.64616 | opp_overlap 695450 GTCCGAGCGCCGTCA CCCCCCGCCTGGGG CAG CTCTGGGCGGGGGA TGCTATGAGTGGAAG TERM 247 695800 - 695823 + G 84 -13.2 -3.76839 | gap 1 GCAGCCTGCTAGCCA GCCTGGAGAGG CCT CCTC-CCAGGC TTTACGTTAGGGTTA APE_1098 695697 - 696863 + | RNA (cytosine-C(5)-)-methyltransferase APE_1102 697279 - 696860 - | hypothetical protein ppnK 698084 - 697242 - | inorganic polyphosphate/ATP-NAD kinase APE_1106.1 698190 - 699224 + | hypothetical protein fbpA 700434 - 699271 - | fructose-1,6-bisphosphatase TERM 248 700606 - 700620 + H 74 -7.8 -4.07568 | overlap 700607 CGGTAGCCCCCCGGC TGCTGG GGT CCAGCG TTTTCAACGGCCGCC APE_1113 700662 - 701186 + | hypothetical protein APE_1114.1 702131 - 701208 - | methionine aminopeptidase APE_1117 702212 - 702940 + | hypothetical protein APE_1119.1 704815 - 702971 - | putative ATPase RIL TERM 249 703340 - 703358 + g 71 -11.6 -3.32343 | CGCCTCCCTGGCTAG GGCGGCCG CCA CGGCCACC TTCTGCAGCTCTCCC APE_1123.1 705007 - 706125 + | hypothetical protein APE_1127 706125 - 706454 + | hypothetical protein TERM 250 707142 - 707130 - g 75 -9.1 -4.04149 | overlap 707121 GAAGTACAGCATAAA CTGGG TGG CCCAG GGTCTCAAGCCAAGG TERM 251 707890 - 707858 - g 76 -13.4 -2.86124 | overlap 707853 CCTACCTAAACAGGA CCCAGCCCTGGAAG CTCCT CTCCCAGGACAGGG AGGAGGGTGTAAGGG metG 706474 - 708192 + | methionyl-tRNA synthetase rps24e 708256 - 708612 + | 30S ribosomal protein S24e rps27ae 708619 - 708810 + | 30S ribosomal protein S27Ae TERM 252 708849 - 708804 - f 72 -8.5 -3.71848 | gap 4, opp_overlap 708817 708844 708846, overlap 708807 708818 GTTCGTCACCAAGAA GAAGTAGCAGGCAAGCCCCCGCC CCCG GGCGGGGG---GCCT-CTACTCC AGGGTCTGGGGTCTT TERM 253 708839 - 708818 - f 83 -12.9 -3.11955 | opp_overlap 708817, overlap 708807 708804 AGAAGTAGCAGGCAA GCCCCCGCC CCCG GGCGGGGGG CCTCTACTCCAGGGT APE_1135 708868 - 709917 + | O-sialoglycoprotein endopeptidase APE_1136.1 709878 - 710573 + | putative protein kinase ntpA 710566 - 711132 + | nucleoside-triphosphatase rps15p 711198 - 711650 + | 30S ribosomal protein S15P lysC 711862 - 713226 + | aspartate kinase TERM 254 713492 - 713526 + G 74 -7.1 -4.38712 | gap 1, overlap 713493 CCAGGCGGCCGCGGA GCT-GGAGCCCGCCCT TGCC AGGGAGGGCTTCGAGG TTTTCTCCAACTCGA asd 713223 - 714272 + | aspartate-semialdehyde dehydrogenase hom 714269 - 715267 + | homoserine dehydrogenase APE_1147.1 715292 - 716599 + | hypothetical protein APE_1147a 716569 - 716826 + | hypothetical protein TERM 255 717119 - 717135 + F 82 -9.3 -4.18367 | overlap 717120 GGGCCGGTGTGGTAA GCCCCGG GGG CCGGGGG TTTATCTATGTGATA TERM 256 717120 - 717134 + F 79 -12.8 -3.10297 | overlap 717119 GGCCGGTGTGGTAAG CCCCGG GGG CCGGGG GTTTATCTATGTGAT rps3ae 719079 - 719723 + | 30S ribosomal protein S3Ae TERM 257 719736 - 719726 - f 72 -8.2 -3.84712 | GAAGGTCACATGAAA CCCC TGA GGGG GTGCCCCGGCACGGC TERM 258 720283 - 720250 - g 76 -12.5 -3.16881 | gap 1, opp_overlap 720256 CATGGAGTGGAGGAA GATGAGGGGGAAGCAC CCA GT-CCTCCCCCTCCTC TCCAGGGTTGCCGTC APE_1156.1 719783 - 720841 + | hypothetical protein APE_1158.1 720834 - 722402 + | hypothetical protein rnp2 722770 - 722399 - | ribonuclease P protein component 2 TERM 259 723030 - 723069 + r 75 -11.3 -3.07013 | opp_overlap 723026 GGGGGTATAAGGGGA GGGGTAGCCGCCGGC TCTACCTCTT GCCGGCGGCGGCCAC TATCTTCACAACATC APE_1164 724278 - 723046 - | translation-associated GTPase APE_1167.1 725056 - 724355 - | putative RNA-associated protein TERM 260 724493 - 724548 + g 73 -11.8 -3.07962 | gap 1, overlap 724495 CCAGTCCGCCTTCTT TACCTCCCCCATCCTCATG-AGGGCCT GGT ATGCCCTGCCCGAGTGTGGGGGCGGTA TCTTCACCTCTAACA APE_1169.1 725871 - 725116 - | hypothetical protein TERM 261 726233 - 726200 - R 76 -12.5 -2.53759 | gap 1, overlap 726187 AACAGTGGCAACCCA CTGGCTACGGCCAAGG TAC CCTCGGCC-TATCCAG TAACACCAACATACT APE_1169a 726815 - 726552 - | hypothetical protein TERM 262 726774 - 726732 - G 76 -13.2 -3.15861 | CAGGAGGGCCATGAA GGCTAGGGCGAAGGGGCCCC CGG GGTTCTCCCCCGCCCAAGCC AGAATCTCCCGCAGC APE_1173.1 727887 - 726823 - | hypothetical protein APE_1177.1 728049 - 729443 + | hypothetical protein rfbC 730712 - 730149 - | dTDP-4-dehydrorhamnose 3,5-epimerase rfbD 731618 - 730716 - | dTDP-4-dehydrorhamnose reductase rfbB 732619 - 731627 - | dTDP-glucose 4,6-dehydratase rfbA 733699 - 732632 - | glucose-1-phosphate thymidylyltransferase TERM 263 733772 - 733741 - R 72 -5.2 -4.48713 | overlap 733744 GGGATCAACAATAAA TAGCGTCCATGCTA GCAG TAGCACAAACGTTA TTAGGTTTATTCCTA APE_1182 735953 - 734385 - | hypothetical protein APE_1183 737633 - 736704 - | hypothetical protein APE_1184 739288 - 738215 - | glycosyl transferase family protein TERM 264 738280 - 738270 - G 71 -6.8 -4.21936 | overlap 738245 CCCAGAAGGCTAAAA GCTC TAA GAGC CGGGTGCAATGACTT APE_1186.1 740559 - 739270 - | hypothetical protein TERM 265 739756 - 739768 + g 70 -4.9 -4.44046 | GGTAATAATAGCAGC TCTTA TGT TAAGA TTTCTTTCAGCTAAA APE_1187.1 742859 - 740556 - | hypothetical protein APE_1188 744016 - 742865 - | glycosyl transferase, group 1 TERM 266 743270 - 743280 + g 84 -4 -5.23316 | GTTAATTTCGCCAAT TCTT TCA AAGA TTTTTTCATATAATA APE_1189.1 744864 - 744013 - | glycosyl transferase family protein TERM 267 744096 - 744113 + g 81 -3.3 -5.26119 | opp_overlap 744098, overlap 744098 AGCTATCTGGATGCA AACCGGG TTTT CTCGGTA TTTTCTTTTTAGAAA APE_1190.1 745524 - 744904 - | hypothetical protein APE_1191 746786 - 745695 - | glycosyl transferase, group 1 APE_1192 747663 - 746791 - | glycosyl transferase family protein APE_1193.1 748187 - 747756 - | hypothetical protein TERM 268 748167 - 748177 + g 71 -8.2 -3.99315 | TCTAGTAGTTGTAAC GCCC CCC GGGC TTCTTTCCATGTAGT APE_1194.1 748753 - 748448 - | hypothetical protein cysC 749425 - 748874 - | adenylyl-sulfate kinase TERM 269 749008 - 749023 + g 74 -6.8 -4.30719 | CAGTGAAGTTTTCCA GCTCTC CCTT GAGGGC TTTCTTGTAAAGGCC APE_1196.1 749853 - 750650 + | hypothetical protein TERM 270 750794 - 750807 + G 71 -8.1 -3.96148 | CCCGGGGGGTTTTCA GCCCT CTCG AGGGC TTTATGGTCGAGGAC sat 750640 - 751791 + | sulfate adenylyltransferase APE_1199 753192 - 751816 - | hypothetical protein TERM 271 753427 - 753482 + G 76 -12.7 -3.01924 | gap 1, opp_overlap 753462, overlap 753429 753436 TGTTCTTGCTGGCGG TAGGGGGGAGAGGCTTTGGCCT-GTT AGTGA GACTAGGGCTAAGCCTCTCGTCCCTA TCTTGGGGGAGCCTC TERM 272 753860 - 753894 + G 71 -12.1 -2.92667 | opp_overlap 753859 753860, overlap 753865 753870 GGGGTTGTTGAGAAG CCCAGGGAGCCCCGG GGGGG CTGGGTTTTCCTGGG TGGTTTCAAGGTTGA APE_1202.1 753392 - 754642 + | putative nucleotidyl transferase glmS 754817 - 756670 + | isomerizing glucosamine--fructose-6-phosphate aminotransferase APE_1208.1 756713 - 757804 + | putative nucleotidyl transferase APE_1209 759475 - 758678 - | hypothetical protein TERM 273 758795 - 758811 + g 70 -4.3 -4.62471 | overlap 758797 GCACGGGGCGATTCC TAGCGCC TGA GTCGCTG TTTTCTCTGTGACTT APE_1209a 759592 - 759789 + | truncated acyl-CoA dehydrogenase APE_1209b 760274 - 759849 - | hypothetical protein APE_1209c.1 760476 - 760255 - | hypothetical protein TERM 274 760519 - 760501 - H 84 -3.8 -5.31456 | opp_overlap 760501 CCAACCCATAAAAAA GGTTTAGA CCC CCTAAGCC TTTATCCTAGCATGC APE_1209d 760551 - 760721 + | hypothetical protein APE_1209e 760854 - 761129 + | truncated acyl-CoA dehydrogenase APE_1209f 761133 - 761231 + | truncated acyl-CoA dehydrogenase TERM 275 761436 - 761451 + F 83 -5.4 -5.08824 | gap 1, overlap 761436 AGCTCTCGGCGTGGG CCC-GAG ACA CTCTGGG TTTTTTGCATCAACC APE_1210.1 761487 - 763202 + | hypothetical protein APE_1211.1 763296 - 763670 + | hypothetical protein TERM 276 768027 - 767988 - g 75 -10 -3.75665 | gap 1, overlap 767991 CTACAGGCTAGGAAA CCACGTCTCCACCCC-GCT GGG AGCAGGGGTAGAGGCGTAC CACCGGGAGGGCGGC TERM 277 768024 - 767991 - g 77 -13.9 -2.97171 | gap 1, overlap 767988 CAGGCTAGGAAACCA CGTCTCCACCCC-GCT GGG AGCAGGGGTAGAGGCG TACCACCGGGAGGGC APE_1213.1 764194 - 768282 + | surface layer-associated protease precursor TERM 278 768291 - 768316 + F 70 -6.7 -4.07885 | opp_overlap 768285 GGGCTAACACCCCCC CAGAGGGCGGC CCAG GATGCCCCCTG TTTTCCCCGCGCCTG TERM 279 768452 - 768471 + G 93 -11.4 -4.46212 | gap 1 GCGGGGGGCGGTGCT GCCG-GGGC CCA GCCCTCGGC TTTTGTAGTGGGCCC APE_1216 768368 - 769969 + | surface layer protein APE_1219.1 771226 - 770147 - | hypothetical protein APE_1220 771388 - 772323 + | hypothetical protein APE_1221 772391 - 773461 + | hypothetical protein APE_1223.1 773611 - 774780 + | cystathionine beta-synthase metC 774777 - 775931 + | cystathionine gamma-lyase APE_1228.1 776754 - 776023 - | putative CRISPR-associated protein APE_1230 777886 - 776762 - | CRISPR-associated protein APE_1231 778748 - 777900 - | CRISPR-associated protein TERM 280 778482 - 778494 + g 72 -9.1 -3.84674 | ATACTGAACTCGCCC GCGCA TTA TGCGC TTCTTCTGATAAGCT cas3 780457 - 778745 - | CRISPR-associated helicase Cas3 APE_1234.1 781283 - 780435 - | CRISPR-associated protein APE_1235 782373 - 781330 - | CRISPR-associated negative autoregulator APE_1236.1 782776 - 782381 - | putative CRISPR-associated protein APE_1237.1 783666 - 782944 - | putative CRISPR-associated DNA-binding protein cas4 784235 - 783636 - | putative CRISPR-associated Cas4 family protein cas2 784515 - 784237 - | CRISPR-associated Cas2 family protein cas1 785502 - 784519 - | putative CRISPR-associated Cas1 family protein APE_1241.1 786281 - 785499 - | putative CRISPR-associated protein TERM 281 789463 - 789434 - R 90 -9.9 -4.4261 | gap 1, opp_overlap 789434 789434 789429 789435, overlap 789436 789438 CGGGGAAGAGTAAAA CACACCAGGGGCTC CGG GGGCCCCTGGGG-G CTGTGTTTACATGGT TERM 282 789435 - 789463 + r 76 -12.3 -2.56391 | opp_overlap 789434 789436 789438, overlap 789434 789434 789429 GGGGAAGAGTAAAAC ACACCAGGGGCTC CGG GGGCCCCTGGGGG CTGTGTTTACATGGT TERM 283 789462 - 789436 - R 100 -13.6 -3.81853 | opp_overlap 789435 789434 789434 789429, overlap 789434 789438 GGGAAGAGTAAAACA CACCAGGGGCTC CGG GGGCCCCTGGGG GCTGTGTTTACATGG TERM 284 789460 - 789438 - R 100 -14.8 -3.48465 | opp_overlap 789435 789434 789434 789429, overlap 789436 789434 GAAGAGTAAAACACA CCAGGGGCTC CGG GGGCCCCTGG GGGCTGTGTTTACAT APE_1241a 789757 - 789491 - | hypothetical protein TERM 285 789743 - 789776 + g 100 -13.7 -4.82819 | overlap 789745 GGGCATCTCACCCTG CTCCCCAGCCCCCAC AGGC GCGGGGGCTGGCGTG TTTTATTGTACTGTG TERM 286 789745 - 789774 + g 100 -14.9 -4.02119 | overlap 789743 GCATCTCACCCTGCT CCCCAGCCCCCAC AGGC GCGGGGGCTGGCG TGTTTTATTGTACTG APE_1244.1 791551 - 789800 - | hypothetical protein TERM 287 790059 - 790015 - G 71 -12 -3.0094 | gap 1 CGGCAGCTACAGAGA CCCCCCTGCCGGCGGCTAGCA GGTA CGCG-GCGGCCAGCAGGGGTG AGAGGGCTGCCGAGA TERM 288 791595 - 791575 - R 100 -13.9 -4.83615 | opp_overlap 791574 791573 791571 CACCCTCCACAAAAA CCCGGCCGC CAA GAGGCCGGG CGTGTATTGTTTTAT APE_1245.1 792700 - 791720 - | putative zinc-binding dehydrogenase TERM 289 792758 - 792776 + H 81 -6.7 -4.66163 | gap 1, opp_overlap 792749, overlap 792762 TATTAACGTGGCCTC CCAGCCGG CAGC CCGG-TGG TTTTTGAGTGACGGT TERM 290 794657 - 794688 + G 80 -9.4 -4.18697 | gap 1 CTCTATAGTCTCCGT CCTGCT-GGGGTTGC ACG GCGACCCCGAGGGGG TTTTGGAATGGTTTT TERM 291 795267 - 795305 + G 74 -13.7 -2.59431 | CTCATGCTATACTCC GCGGCCGCGGGTCTCGC AGCGG GCGTGATCGGCGGCCTC TCCATTCTAGCCACG APE_1248 792891 - 795506 + | hypothetical protein APE_1253 795518 - 796438 + | hypothetical protein APE_1255.1 796462 - 797211 + | hypothetical protein APE_1257 797208 - 798527 + | hypothetical protein APE_1258.1 798962 - 799516 + | hypothetical protein APE_1260 799541 - 800170 + | hypothetical protein czrB 800283 - 801143 + | cation efflux protein CzrB TERM 292 801676 - 801700 + G 75 -9.1 -3.99324 | overlap 801677 AGAGCGTCGCCTTCA AGCTCGCCGCC CTC GGCGCCGGGCC TTTCTACTACTACAG TERM 293 801677 - 801699 + G 74 -12.6 -2.99273 | overlap 801676 GAGCGTCGCCTTCAA GCTCGCCGCC CTC GGCGCCGGGC CTTTCTACTACTACA TERM 294 801831 - 801806 - g 74 -11.1 -3.59738 | overlap 801808 CATGATACTCGTAAA CAGCCTCCCCC TCAC GGGGGAGACCA GGGGTCTCGTCACAG TERM 295 801829 - 801808 - g 83 -13.7 -3.37487 | overlap 801806 TGATACTCGTAAACA GCCTCCCCC TCAC GGGGGAGAC CAGGGGTCTCGTCAC APE_1265.1 801192 - 802235 + | putative glyoxylate reductase APE_1267.1 803518 - 802232 - | putative oxidoreductase APE_1270.1 804066 - 803617 - | hypothetical protein APE_1272.1 804472 - 804053 - | hypothetical protein TERM 296 804529 - 804548 + r 100 -16.4 -3.65199 | overlap 804540 804541 ACGCGCTCCTCACGC CCCCCCGG GTTG CCGGGGGG TTTGGCTCCCGGATT APE_1273.1 805758 - 804586 - | nicotinate phosphoribosyltransferase TERM 297 806599 - 806578 - g 72 -9.5 -3.75292 | gap 1, opp_overlap 806581, overlap 806581 AGTTATCACTAACAA TAC-GGCTGG AGG CCAGCCTGTA TCCATGGATAACGTG tnaA 806006 - 807409 + | tryptophanase APE_1275a 807504 - 807785 + | hypothetical protein TERM 298 807942 - 807889 - gf 81 -13.1 -2.63079 | gap 1, opp_overlap 807900, overlap 807899 CCCCCATATAATGGA GCCTCAGACAGCGGGGGAGACCCG TTACTCC CGCG-CTCCCACGCCACCCGAGGC TGCCAGTATGGAGCC APE_1275b 807668 - 807964 + | hypothetical protein APE_1275c 808068 - 808184 + | hypothetical protein APE_1276 808208 - 809323 + | hypothetical protein APE_1277 809886 - 809320 - | hypothetical protein APE_1278 810268 - 809861 - | hypothetical protein APE_1279.1 810966 - 810304 - | pyrimidine nucleotide reductase APE_1279a 811275 - 810982 - | hypothetical protein TERM 299 811034 - 811061 + g 77 -7.6 -4.34402 | gap 1, overlap 811030 CCCGCTATATGCTCC GCCGCC-TCCCGG AGG CTGGGGTGGAGGC TTTTCCTCTCGAGCA APE_1281 811531 - 813462 + | hypothetical protein APE_1284.1 813545 - 814045 + | hypothetical protein APE_1285.1 814096 - 815097 + | hypothetical protein APE_1286 816503 - 815094 - | hypothetical protein TERM 300 820667 - 820699 + G 87 -9.9 -4.58663 | gap 1, opp_overlap 820663 820666 820667 TACCTACACGACAAG CTAGGCGCCAAGGC ACCCCA GCCT-GGAGCCTAG TTTTTACGGGGTGGT narG 816848 - 820699 + | nitrate reductase, alpha subunit TERM 301 821473 - 821455 - g 71 -11.7 -3.00298 | opp_overlap 821457, overlap 821457 CTTCCCAAGGATAGA GACGGGC CAGCC GCCCGTC TGTGCACTGACCTGC narH 820739 - 822133 + | nitrate reductase, beta subunit APE_1297 822153 - 823118 + | putative nitrate reductase, gamma subunit APE_1298 823345 - 824079 + | hypothetical protein narJ 824082 - 824618 + | nitrate reductase delta subunit APE_1301.1 825397 - 824615 - | ABC transporter, ATP binding protein APE_1303.1 826688 - 825405 - | ABC transporter, substrate binding protein TERM 302 826052 - 826073 + g 85 -9.4 -4.55295 | AGTCGCCAACCACCT GCAGCCCT AGAGAG GGGGCTGC TTTCTTTATAGCCCC APE_1304.1 827819 - 826782 - | ABC transporter, permease protein TERM 303 827726 - 827710 - G 72 -9.3 -3.78775 | TTGCCTATTACGAAA GGCGCGG CGA CCGCGGC AACCACGGCGAGTAT APE_1305 828720 - 827836 - | ABC transporter, permease protein APE_1307 830682 - 828727 - | putative fatty-acid--CoA ligase APE_1308 831438 - 830686 - | ABC transporter, ATP binding protein TERM 304 831911 - 831889 - g 86 -12.1 -4.03234 | CGTCCTTCATAGAAA GGATTGGAG GCTGG CTCCAATCC AAAGGTGTCAGCCAT APE_1310 831654 - 833243 + | putative fatty-acid--CoA ligase APE_1313.1 833304 - 833840 + | hypothetical protein TERM 305 834602 - 834640 + GF 90 -14.4 -2.82015 | opp_overlap 834597 ACTTCAAGTACGGAC AGGCCCTCGCCGGGCTAG CCG CGGTTCCGGCGAGGGCCC TCTCCTCCATGTGGG TERM 306 834860 - 834808 - gf 81 -13.4 -2.78596 | gap 1, opp_overlap 834808, overlap 834810 GAGGCTGCGAGGAGA GACCCCATCCTGAGGGCCGC-CCTA ACCT TCGGTGTGGCCCTCAGGTTAAGGCC TCTTAGACGCCTCCT TERM 307 834858 - 834810 - gf 78 -12.4 -2.94099 | gap 1, opp_overlap 834808, overlap 834808 GGCTGCGAGGAGAGA CCCCATCCTGAGGGCCGC-CCTA ACCT TCGGTGTGGCCCTCAGGTTAAGG CCTCTTAGACGCCTC APE_1315 833830 - 834936 + | hypothetical protein TERM 308 835242 - 835254 + GF 70 -4.1 -4.65078 | ACCGTGCTAATCCTC GTACT CAG AGTGC TTTTCTTGAGGCTAT APE_1317 834911 - 835831 + | hypothetical protein APE_1319.1 835856 - 837103 + | hypothetical protein APE_1322.1 837100 - 837822 + | hypothetical protein APE_1322a 837843 - 838043 + | hypothetical protein TERM 309 838086 - 838104 + T 70 -6.6 -4.11235 | opp_overlap 838068 838084 838086 GTGTTACATAACACA CGCTGGCT TGG AGCCCGTG TTTCTATCCTCGTTG APE_1322b 838290 - 838120 - | hypothetical protein TERM 310 838481 - 838463 - H 81 -7.3 -4.68124 | GCAACAGATATAAAA GGCCTGG ATACA CCTGGCC AAGTGGAGCATGAGG APE_1323.1 838501 - 838956 + | single-strand DNA-binding protein TERM 311 839061 - 839086 + T 85 -13.3 -3.27051 | overlap 839059 CAATTTTTGGAATCC CGTCTCCTCGG CTTG CCGGGGAGATG TCTTGTCACCTTTCT APE_1324 839616 - 839092 - | hypothetical protein TERM 312 839568 - 839583 + g 70 -11.8 -2.78384 | GCTTATCCCTGTCAC CGGGGC AGAG GCCCCG TATCCTCACGCGGCG TERM 313 839681 - 839704 + r 70 -3.8 -4.60258 | overlap 839684 GAGGATTGGGGGTGC AACTGGAGGA CGCC TCCTCCATTA TTTGTTCTTTCCTGG TERM 314 839684 - 839701 + r 90 -9.9 -4.38503 | overlap 839681 GATTGGGGGTGCAAC TGGAGGA CGCC TCCTCCA TTATTTGTTCTTTCC APE_1326.1 840876 - 839725 - | hypothetical protein TERM 315 839899 - 839916 + g 74 -11.3 -3.55071 | GCGGGCCACCTCCCT CTCCCCT GCGG AGGGGAG TTTCGACAGGTCTCC TERM 316 842483 - 842468 - g 75 -11.8 -3.23447 | opp_overlap 842468, overlap 842466 TCAAGGGTGATAATA CCCCCG TTCC CGGGGG TGTTCAGCGCTCTGG TERM 317 842468 - 842483 + G 73 -11.8 -3.03771 | opp_overlap 842468 842466 TCAAGGGTGATAATA CCCCCG TTCC CGGGGG TGTTCAGCGCTCTGG hyuA 841037 - 843079 + | hydantoin utilization protein A TERM 318 844631 - 844617 - g 71 -7.1 -4.12532 | opp_overlap 844623 CGGTCTACATACAAA CGCCT GGGGG AGGCG GCTACGGCGACCCCT hyuB 843086 - 844774 + | hydantoin utilization protein B APE_1333 844836 - 845147 + | hypothetical protein APE_1335.1 845231 - 846256 + | N-terminal deblocking aminopeptidase APE_1336.1 847902 - 846253 - | putative phytoene dehydrogenase APE_1337.1 848063 - 848746 + | hypothetical protein APE_1339.1 848760 - 849434 + | hypothetical protein rgy 849477 - 853589 + | reverse gyrase APE_1343 853593 - 854513 + | hypothetical protein APE_1343a.1 854634 - 854909 + | hypothetical protein TERM 319 855262 - 855292 + G 100 -16.8 -3.82218 | opp_overlap 855246 CCCTAGCTCCACGCG GCGGCCTCGAGGTG GGG CTCCTGGAGGCCGC TTTGATACTCTACGT APE_1345 854925 - 855518 + | hypothetical protein acsA 857503 - 855533 - | acetyl-coenzyme A synthetase TERM 320 857585 - 857575 - H 72 -4.6 -4.614 | overlap 857577 TTGAAGGATATAAAA GCCG GCT CGAC CGCTCCCCACCCTAT APE_1346a 857703 - 857975 + | hypothetical protein moaC 858445 - 858005 - | putative molybdenum cofactor biosynthesis protein C TERM 321 858513 - 858536 + H 85 -10.2 -4.17023 | TATCGGCGAGGTACA CCTCCCTCCG AGAC CGCAGGGGGG TTTTGACCTAATTAG TERM 322 859366 - 859330 - g 81 -11.6 -3.91716 | gap 1, opp_overlap 859338 859340 GTAGCGTTGAAATAA GGAG-GTCGGCGGCG GAGGTCGT CGCCTCCGACGCTCC CCGACTCTTCTTCAG APE_1353.1 858609 - 862574 + | ATP-dependent helicase APE_1357 863328 - 862807 - | hypothetical protein APE_1358.1 864237 - 863530 - | hypothetical protein APE_1360.1 864838 - 864317 - | PadR family transcriptional regulator APE_1361.1 865029 - 865811 + | putative oxidoreductase APE_1362.1 866293 - 865808 - | hypothetical protein TERM 323 866222 - 866235 + g 70 -3.9 -4.58663 | GCCGCTACGACTGTT TATTC CTCT GAATA TTTTTGACGCCTCGT APE_1363.1 866512 - 867333 + | hypothetical protein APE_1364.1 868097 - 867372 - | hypothetical protein APE_1365.1 868863 - 868138 - | GTP cyclohydrolase III ribH 869355 - 868912 - | riboflavin synthase subunit beta APE_1367 869642 - 871822 + | cell division protein CDC48 APE_1372.1 872365 - 872895 + | hypothetical protein TERM 324 873676 - 873690 + G 75 -10 -3.78775 | opp_overlap 873669 GCTTAGAATAGCTGG GCTAGG CCT CCTAGC TTTACTAGTGGGGGG APE_1373 872882 - 874243 + | hypothetical protein APE_1373a 874305 - 874568 + | hypothetical protein TERM 325 876910 - 876895 - g 70 -4.6 -4.55491 | TACTCAACTATAAAA CGCTGT CTCG ACTGCG GAGCCCAGCACACAT TERM 326 877201 - 877185 - g 74 -8 -4.12942 | GGAAAGCGTGGAAAA GAGCCT TATAG AGGCTC AGAAGGTCAGGAGGA TERM 327 877250 - 877219 - g 83 -15.3 -2.83012 | opp_overlap 877208, overlap 877224 877226 AAGGTCAGGAGGATA GTAGACAGGTGGA TAGGAT TCCACCTGTCCAC ACACCTCAAGCTTAA rgy 874786 - 878433 + | reverse gyrase APE_1380.1 878476 - 879414 + | hypothetical protein APE_1381.1 879395 - 880318 + | hypothetical protein APE_1382 880421 - 881773 + | NCS1 nucleoside transporter uppS 882694 - 882035 - | undecaprenyl pyrophosphate synthetase APE_1386.1 882909 - 884165 + | NADP-dependent glutamate dehydrogenase APE_1387.1 884766 - 884182 - | hypothetical protein APE_1388.1 885631 - 884744 - | hypothetical protein APE_1390.1 885826 - 888072 + | ABC transporter, substrate-binding protein precursor APE_1395.1 888217 - 889215 + | ABC transporter, permease protein APE_1396 889217 - 890380 + | ABC transporter, permease protein APE_1399 890388 - 891389 + | ABC transporter, ATP binding protein TERM 328 892300 - 892288 - g 78 -9.1 -4.1021 | GCGCATAAGGATAAA GGGTG AAC CACCC AGCCCTATAAATCCG APE_1402.1 891404 - 892438 + | ABC transporter, ATP binding protein aroA 893724 - 892465 - | 3-phosphoshikimate 1-carboxyvinyltransferase APE_1405.1 893970 - 894296 + | hypothetical protein APE_1406.1 894303 - 895343 + | hypothetical protein APE_1406a 895512 - 895781 + | hypothetical protein APE_1407.1 895833 - 896633 + | hypothetical protein APE_1408 897626 - 896868 - | hypothetical protein APE_1409.1 898628 - 897633 - | hypothetical protein APE_1409a 899073 - 898978 - | hypothetical protein APE_1410.1 900631 - 899246 - | NADH dehydrogenase subunit N APE_1411.1 902750 - 900645 - | NuoL-like protein APE_1415 904316 - 902775 - | NuoM-like protein TERM 329 903195 - 903209 + g 71 -11.4 -3.21276 | overlap 903193 CCTGGCGATGTTCCT GAGGCC GTG GGCCTC TGTTATGAAGACGCC APE_1417.1 904627 - 904322 - | NuoK-like protein APE_1418.1 905120 - 904638 - | NuoJ-like protein APE_1419.1 905670 - 905110 - | NADH dehydrogenase subunit I APE_1421.1 906830 - 905703 - | NADH dehydrogenase subunit H APE_1422 908107 - 906863 - | NADH dehydrogenase subunit D APE_1426 908661 - 908092 - | NuoC-like protein APE_1428.1 909273 - 908674 - | NuoB-like protein TERM 330 909130 - 909175 + g 90 -17 -3.28924 | gap 2, overlap 909132 GCAGCAGCTGGTTGT GA-GGTGGAC-GGGCCACAGGC TGAA GCTGGTGGCCCAGTCCACCATC TTGTCGAGGGGGATC TERM 331 909132 - 909172 + g 100 -19.8 -2.52623 | gap 1, overlap 909130 AGCAGCTGGTTGTGA GGTGGAC-GGGCCACAGGC TGAA GCTGGTGGCCCAGTCCACC ATCTTGTCGAGGGGG TERM 332 909300 - 909331 + r 72 -10.2 -3.3452 | opp_overlap 909297, overlap 909305 CCTACTACACTACCC GAGTATCCAGGC CTCGAGCC GCCTGGATTCTC TTATCCCGTAGTATA APE_1430.1 909710 - 909294 - | NADH dehydrogenase subunit A fusA 912063 - 909853 - | elongation factor EF-2 APE_1436.1 912860 - 912114 - | repair endonuclease XPF APE_1437.1 914008 - 912962 - | hypothetical protein TERM 333 913703 - 913693 - GR 70 -6.8 -4.07568 | opp_overlap 913696 913697 GCGCCGCCCTGAAAA GGCT CTC AGCC CCCGCTATCTGGCTG TERM 334 913918 - 913893 - GR 76 -11.1 -3.27475 | gap 1, opp_overlap 913892 913893, overlap 913891 TCGCGGACGACAAGA GCCG-CACCGAC GGC GTCGGGGTCGGC GTTCCTATGTGTTAT APE_1437a 914255 - 913923 - | hypothetical protein pfdB 914604 - 914233 - | prefoldin beta subunit APE_1440a 914911 - 914630 - | hypothetical protein mscS 915750 - 914908 - | small conductance mechanosensitive channel MscS APE_1442 916477 - 915758 - | hypothetical protein APE_1443.1 917031 - 916489 - | hypothetical protein rpl37ae 917469 - 917209 - | 50S ribosomal protein L37Ae APE_1445 918316 - 917486 - | exosome complex RNA-binding protein Rrp42 TERM 335 918292 - 918280 - G 75 -9.1 -3.9461 | CCTCCCTAACAATAA CCGGT GCA ACCGG TAGCCTATGAGGCGT APE_1447 919053 - 918313 - | exosome complex exonuclease Rrp41 APE_1448 919765 - 919058 - | exosome complex RNA-binding protein Rrp4 psmA 920680 - 919904 - | proteasome subunit alpha TERM 336 920201 - 920224 + g 73 -3 -4.78237 | opp_overlap 920198, overlap 920196 920200 920203 GAAGCTGAAGTACTG GCCTCCAGGG TCTG TCCTGTAGAC TTTTGTTGTGCCATC rnp3 921478 - 920843 - | ribonuclease P protein component 3 APE_1451.1 921950 - 921489 - | hypothetical protein rpl15e 922735 - 922058 - | 50S ribosomal protein L15e APE_1454.1 923066 - 925582 + | cation-transporting ATPase APE_1457 926422 - 925901 - | hypothetical protein APE_1458 927922 - 926537 - | mercuric reductase lysM 928503 - 928078 - | HTH-type transcriptional regulator LysM lysZ 929312 - 928500 - | acetylglutamate kinase lysY 930400 - 929333 - | N-acetyl-gamma-aminoadipyl-phosphate reductase/N-acetyl-gamma-glutamyl-phosphate reductase TERM 337 930413 - 930435 + H 90 -7.8 -4.85599 | overlap 930415 CATACATATGTACCC CAGGTTTAGT GAT ACTAAACCTC TTTTTATAGCATCCG TERM 338 930415 - 930433 + H 83 -10.4 -4.05067 | overlap 930413 TACATATGTACCCCA GGTTTAGT GAT ACTAAACC TCTTTTTATAGCATC lysW 930565 - 930735 + | lysine biosynthesis protein LysW TERM 339 931127 - 931158 + G 84 -13 -3.71527 | opp_overlap 931130, overlap 931130 GTTCCCCGCGGTATT CAAGCCTGCCCGAG GAAG CTGGGGCAAGCTTG TTTCCCTCCTTAGGG TERM 340 931130 - 931155 + G 75 -8.9 -3.98745 | opp_overlap 931130, overlap 931127 CCCCGCGGTATTCAA GCCTGCCCGAG GAAG CTGGGGCAAGC TTGTTTCCCTCCTTA lysX 930732 - 931592 + | lysine biosynthesis protein LysX/ribosomal protein S6 modification protein RimK lysJ 931616 - 932782 + | acetyl-lysine aminotransferase/acetylornithine aminotransferase lysK 932742 - 933794 + | acetyl-lysine deacetylase TERM 341 933889 - 933903 + F 79 -12.8 -3.05463 | opp_overlap 933880 933878 CACAGACTGCCGAAG CCCCGG CAC CCGGGG TTCCATGGGGAGGGT APE_1470.1 934072 - 934881 + | hypothetical protein APE_1471.1 934913 - 935218 + | putative GTP cyclohydrolase I APE_1472 936176 - 935247 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta TERM 342 935766 - 935792 + g 93 -12.3 -4.3739 | gap 1 CTTCGTCTTGACCCA GGCT-GGCAGCG TCGG CGCTGCCTGGCC TTTTGTGAGGCCGTA APE_1473.1 938094 - 936166 - | 2-oxoacid:ferredoxin oxidoreductase alpha subunit TERM 343 937071 - 937087 + g 73 -12.3 -3.15544 | TCTCTGCCTCCACGG CGAGGCT AAC AGCCTCG TTCATCAGGCTGAAG APE_1473a 938453 - 938145 - | hypothetical protein APE_1477 939481 - 938555 - | hypothetical protein APE_1478.1 939776 - 940441 + | hypothetical protein nudF 940590 - 941132 + | ADP-ribose pyrophosphatase APE_1483.1 941110 - 941949 + | hypothetical protein TERM 344 942220 - 942209 - T 72 -4.4 -4.62069 | CGCGGAGGGCAAAAA TCCA GGGG TGGA GGCTTTTTAGGAGGG APE_1484.1 944258 - 942249 - | 3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA dehydratase APE_1484a 944400 - 944666 + | hypothetical protein thrC 944849 - 945871 + | threonine synthase sirC 945886 - 946548 + | precorrin-2 dehydrogenase hemD 946526 - 947248 + | putative uroporphyrinogen-III synthase APE_1494 947824 - 947216 - | hypothetical protein APE_1495.1 948806 - 947826 - | hypothetical protein TERM 345 948906 - 948888 - H 78 -9.5 -3.93658 | opp_overlap 948888 948887 948885 AACACCGCTAAACAA CCGCCCC AGGAG GGGGCAG CTTGTATATAGGGTG APE_1495a 949095 - 949331 + | hypothetical protein APE_1497.1 950456 - 949482 - | hypothetical protein APE_1498.1 951794 - 950559 - | threonine dehydratase APE_1501.1 952180 - 951779 - | ribonuclease UK114 TERM 346 952118 - 952095 - G 75 -8.8 -4.06185 | opp_overlap 952097 952108 GAGACAAACATGAAA CAGCCCGACT CGAC AGCCTGGCTG TATGGTCCCACAGGC APE_1503.1 952510 - 953004 + | hypothetical protein TERM 347 953774 - 953757 - g 72 -8.5 -3.94409 | GAGATCACTGATAAA GGGATAA TAGT TTATCCC GACAAGGTCGTGAGG APE_1505.1 953070 - 953816 + | hypothetical protein guaB 953850 - 955151 + | inosine-5'-monophosphate dehydrogenase TERM 348 955390 - 955376 - g 78 -11.4 -3.63805 | opp_overlap 955375 ACTGTAGACGTTAAA CCTCCC GAG GGGAGG GTGATTGAGGTTGCA APE_1509.1 955172 - 955633 + | hypothetical protein APE_1510.1 956407 - 955640 - | hypothetical protein TERM 349 956050 - 956023 - G 88 -14.2 -3.62224 | AGACCGGTGTAAGAA GCTCCCCAGGCT CTAT AGCCTGGAGAAC ATCCCAACTTGTGAA TERM 350 956879 - 956893 + G 78 -9.2 -3.99405 | GTGGGCACACTCCTA GCCGTC CAC GGCGGC TTTGTCCTGGATTCA TERM 351 957401 - 957385 - g 71 -10.9 -3.20858 | overlap 957388 GACGAGACCCAGGAA CAAGGGT CTA ACCCTTG AGGTGGGGATGGATG APE_1512 956501 - 957424 + | hypothetical protein APE_1514.1 957417 - 958160 + | hypothetical protein APE_1516.1 958144 - 958782 + | putative CDP-alcohol phosphatidyltransferase ino1 958933 - 960111 + | inositol-3-phosphate synthase APE_1517a 960434 - 960108 - | hypothetical protein APE_1520.1 960949 - 960539 - | hypothetical protein rfc 961097 - 962074 + | replication factor C small subunit rfcL 962079 - 963518 + | replication factor C large subunit APE_1525 963989 - 963669 - | hypothetical protein APE_1526.1 964570 - 963986 - | putative CDP-alcohol phosphatidyltransferase TERM 352 965751 - 965721 - g 79 -13.2 -3.33696 | GTGGCTTTCAAGCAA CTACGAGCTGGCGG CGT CGGCCAGCGCGCAG CTCTACAGCTACGCG APE_1528.1 964696 - 965865 + | hypothetical protein APE_1529.1 966188 - 965862 - | hypothetical protein APE_1530.1 967590 - 966238 - | MiaB-like protein TERM 353 966641 - 966617 - G 71 -12.8 -2.57683 | opp_overlap 966637, overlap 966616 ACAGTGTTCCAGAAC GCCTCCCAGG TCTCG CCTGGGTGGC CGACGATAATGTCGG aif2b 967716 - 968162 + | translation initiation factor IF-2 subunit beta TERM 354 968209 - 968181 - T 70 -6.6 -4.11394 | AGCCTACCCGGAAAA TCCCGCGAGCCC CTAGC GAGCCCATGGGA GCCTGGCCTCTAGAA APE_1534 969059 - 968193 - | hypothetical protein TERM 355 969146 - 969119 - H 77 -12 -3.16564 | gap 1 TCTGGAGGCCATCAA CCCAC-CAGGGCC CTG GACCCCGGGTGGG CCTGCCTAGTCAACG APE_1535.1 969343 - 970440 + | PflX-like protein tpiA 970493 - 971164 + | triosephosphate isomerase APE_1539.1 972489 - 971170 - | hypothetical protein TERM 356 971536 - 971520 - G 72 -8.7 -3.88291 | overlap 971510 GATCAGGCTTATAAA CCTCCCT GTA AAGGAGG ACTAGCCTATGCTCC APE_1543 974691 - 972541 - | hypothetical protein TERM 357 974941 - 974951 + G 74 -6.8 -4.36554 | TCATCCCGTTTCTGA GCCT CAT AGGC TTTGTTCTCGTGCTA TERM 358 975154 - 975167 + G 71 -8.1 -4.04209 | overlap 975165 CTGCCGGGATCGGCT CCCTG CTGG CAGGG TTTGTAATCCTTTAC APE_1545.1 974847 - 975443 + | hypothetical protein APE_1546 975822 - 975427 - | hypothetical protein APE_1547.1 977615 - 975879 - | acylamino-acid-releasing enzyme APE_1548.1 977887 - 978789 + | ABC transporter, ATP binding protein TERM 359 979031 - 979043 + G 72 -9.1 -3.9122 | GGTGGAGGAGTACGG CTCCC TGG GGGAG TTGTTTGAGGACCTC APE_1550.1 978786 - 979910 + | ABC transporter, permease protein TERM 360 979972 - 980004 + T 100 -19.9 -2.87344 | TCTCTGGGGTGCGCC TCCTCCGGGAGCCCG AGC CGGCCTCCTGGAGGA TGTATGCGAGCGCTG APE_1552 980908 - 979949 - | hypothetical protein TERM 361 980316 - 980339 + gT 78 -9.5 -3.86524 | TTCAACACACTCTCG GCCGGTGTG TCGTGC CTCACCGGC TTTATACCGCCGTCT TERM 362 980742 - 980707 - GT 73 -11.8 -2.70932 | gap 1, opp_overlap 980695 980741, overlap 980722 GTGCCCCCCCAAGGA GCCCCGGCGCGAA-GAC CCC GCCGCTCCCGCCGGAGC CTATGGAGAGGCTTG APE_1555.1 981771 - 980764 - | hypothetical protein TERM 363 981244 - 981216 - GH 81 -13.1 -2.62184 | CCCTCTTGTAGAGGA CCTCGGCGGCG AAGAAGG CGCTGCCGAGG GGTGAGTGGAATAGG APE_1557.1 982136 - 983074 + | putative alcohol dehydrogenase APE_1558 983868 - 984707 + | hypothetical protein APE_1558a 984884 - 985168 + | hypothetical protein APE_1558b 985215 - 985499 + | hypothetical protein APE_1558c 985860 - 985687 - | hypothetical protein APE_1559.1 986224 - 987150 + | hypothetical protein APE_1559a 987259 - 987438 + | hypothetical protein APE_1561 987537 - 987953 + | hypothetical protein APE_1563.1 988626 - 987907 - | hypothetical protein APE_1564.1 989260 - 988616 - | hypothetical protein APE_1567.1 990454 - 989297 - | hypothetical protein APE_1568.1 990858 - 990526 - | hypothetical protein APE_1569 991461 - 990988 - | hypothetical protein ubiA 992545 - 991691 - | prenyltransferase ubiD 994061 - 992598 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 364 994134 - 994120 - R 73 -11.4 -2.57463 | opp_overlap 994119, overlap 994108 994119 AACGGGGGGTATAAG CCCCTC TAG GAGGGG ATAGTCTCGCCTAGC APE_1573 996075 - 994465 - | hypothetical protein TERM 365 996213 - 996225 + H 72 -4.8 -4.65933 | CTTGGGCTTTCAGTG CACC TTCAC GGTG TTTATTTTGGCGGTG APE_1574.1 996232 - 996798 + | hypothetical protein APE_1574a 997563 - 997282 - | hypothetical protein APE_1576 998728 - 997595 - | oligopeptide ABC transporter, ATP binding protein APE_1578 999705 - 998731 - | oligopeptide ABC transporter, ATP binding protein APE_1581.1 1001277 - 999712 - | oligopeptide ABC transporter, permease protein TERM 366 1000663 - 1000684 + g 75 -5.8 -4.57073 | GCTCTTGAGGCTGAA GCTGACGG AAGAGC CCTTCAGC TTTTTAAGCGGCATC APE_1582 1002405 - 1001314 - | oligopeptide ABC transporter, permease protein TERM 367 1001408 - 1001424 + g 77 -12.3 -3.61654 | opp_overlap 1001403 ACTGTCAGAACCCAT GTGCTGG CGA CCAGCAC TTTGGCGTCGCTCTG oppA 1005441 - 1002694 - | oligopeptide ABC transporter, oligopeptide binding protein APE_1585 1005597 - 1006037 + | hypothetical protein cysK 1006081 - 1007250 + | cysteine synthase APE_1586a 1007607 - 1007461 - | truncated acyl-CoA dehydrogenase APE_1586b 1007754 - 1007647 - | truncated acyl-CoA dehydrogenase APE_1588 1008187 - 1007789 - | hypothetical protein TERM 368 1008376 - 1008391 + H 74 -3.2 -4.9218 | GTGTTTATATTTCGC CCTCTC CACT GACAGG TTTTTATACTACCTC APE_1588a 1008527 - 1008760 + | truncated phosphoenolpyruvate synthase APE_1588b 1008781 - 1008873 + | truncated phosphoenolpyruvate synthase APE_1591.1 1008897 - 1009202 + | putative acylphosphatase cysS 1009252 - 1010670 + | cysteinyl-tRNA synthetase APE_1594 1010655 - 1011458 + | putative ATP-dependent adenyltransferase TERM 369 1011526 - 1011514 - f 70 -5.5 -4.42974 | overlap 1011517 GGCATAGAGAATAAA CCACT CGG AGCGG GCCCGTAGCTCAGCC APE_1594a 1011725 - 1012030 + | hypothetical protein mat 1012110 - 1013330 + | S-adenosylmethionine synthetase APE_1599.1 1015330 - 1013327 - | hypothetical protein APE_1602.1 1016249 - 1015344 - | putative kinase APE_1602a 1016484 - 1016747 + | ArsR family transcriptional regulator pyrG 1018378 - 1016762 - | CTP synthetase APE_1605.1 1018476 - 1019279 + | putative phosphatase APE_1605a 1019293 - 1019532 + | hypothetical protein APE_1609.1 1020326 - 1019529 - | hypothetical protein APE_1610.1 1020978 - 1020289 - | hypothetical protein APE_1611 1023051 - 1021099 - | hypothetical protein APE_1614 1023617 - 1023135 - | hypothetical protein TERM 370 1023524 - 1023538 + g 100 -11.4 -5.02439 | opp_overlap 1023524 CGGAAGCTCCGAAGA GCCTGC CAA GCAGGC TTTTTATACTTCTCT APE_1615 1024727 - 1023672 - | hypothetical protein apgM 1026048 - 1024774 - | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase APE_1617 1026440 - 1026886 + | hypothetical protein citB 1029620 - 1026909 - | aconitate hydratase APE_1622.1 1030845 - 1029676 - | hypothetical protein TERM 371 1030078 - 1030090 + g 71 -10.5 -3.53012 | AGGGTAGAGTCCACC GCCGC TCA GCGGC TTTACCAGCCCACCA APE_1623 1032718 - 1031072 - | cytochrome c oxidase (ba3-type) subunit I APE_1626 1033222 - 1032893 - | hypothetical protein APE_1627 1034011 - 1033310 - | hypothetical protein APE_1629 1034462 - 1034157 - | translation initiation factor Sui1 APE_1629a.1 1034627 - 1034848 + | hypothetical protein APE_1630.1 1035051 - 1036484 + | ABC transporter, substrate binding protein APE_1632 1036628 - 1037494 + | ABC transporter, permease protein TERM 372 1038112 - 1038126 + G 72 -6.4 -4.26903 | overlap 1038113 TGTTCACCTTCCTCC TCTCGT GGA ACGAGG TTTTCATGGCGTCAG APE_1633 1037502 - 1038314 + | ABC transporter, permease protein APE_1635.1 1038321 - 1039379 + | ABC transporter, ATP binding protein speB 1040457 - 1039519 - | agmatinase glyS 1040568 - 1042319 + | glycyl-tRNA synthetase APE_1644.1 1042393 - 1042818 + | hypothetical protein APE_1645.1 1042889 - 1043326 + | hypothetical protein endA 1043365 - 1043925 + | tRNA-splicing endonuclease subunit alpha APE_1647 1044515 - 1043922 - | aromatic acid decarboxylase APE_1648.1 1045054 - 1044485 - | hypothetical protein APE_1649.1 1046354 - 1045071 - | hypothetical protein APE_1652 1046534 - 1047703 + | PqqE-like protein APE_1655 1047693 - 1048904 + | PqqE-like protein APE_1657.1 1048988 - 1049587 + | aldolase class II protein APE_1659 1049590 - 1050597 + | oxidoreductase APE_1660.1 1051040 - 1050594 - | hypothetical protein TERM 373 1051375 - 1051394 + G 72 -9.2 -3.72576 | TATAGCAAGGCTGTG GAGGAGGG CCTG CCCGCCTC TTTCGTCAGGGACGC pth 1051138 - 1051512 + | peptidyl-tRNA hydrolase pyrI 1052008 - 1051529 - | aspartate carbamoyltransferase regulatory subunit pyrB 1052940 - 1052014 - | aspartate carbamoyltransferase catalytic subunit APE_1666 1053786 - 1052980 - | hypothetical protein APE_1668 1054113 - 1053793 - | CutA-like protein pdhD 1055591 - 1054197 - | dihydrolipoyl dehydrogenase TERM 374 1055420 - 1055394 - G 73 -11.7 -3.14132 | gap 1 GCTGCCCTTGACGAA CTTG-AGCCTCG CTAG CGAGGCTACAAG ACCTGCGGGGTGTAG pdhC 1056923 - 1055685 - | branched-chain alpha-keto acid dehydrogenase subunit E2 pdhB 1057916 - 1056939 - | pyruvate dehydrogenase E1 component, beta subunit pdhA 1059064 - 1057931 - | pyruvate dehydrogenase E1 component, alpha subunit TERM 375 1059817 - 1059829 + G 71 -10.5 -3.57144 | CTAGGCTGGCTAAGG GCGCC ATA GGCGC TTTCGCCCTCACCGA APE_1681.1 1059450 - 1060619 + | acyl-CoA dehydrogenase APE_1683.1 1061616 - 1060648 - | transport system kinase APE_1686.1 1062088 - 1061603 - | coenzyme B12-dependent mutase APE_1687 1063763 - 1062066 - | coenzyme B12-dependent mutase TERM 376 1063688 - 1063710 + g 83 -12 -3.90922 | opp_overlap 1063686 TTCTCTCAAGCCATT GTGGGAGGGT CTC GCTCTCCCAC TTCTTTAAAGAGGCT APE_1688.1 1063899 - 1064723 + | ABC transporter, substrate binding protein APE_1689 1065211 - 1064720 - | hypothetical protein APE_1690.1 1065809 - 1065177 - | hypothetical protein APE_1691 1066643 - 1065834 - | zinc transporter TERM 377 1066299 - 1066284 - G 71 -10.4 -3.53224 | GACTTTTCTCCTAAA CGAGGG CGGC CCCTCG TACCCCTTGATCAGG TERM 378 1067138 - 1067160 + G 84 -16.3 -2.5955 | overlap 1067134 ACGTTCTAGTTATTA GCCGGGAGC CCGTT GCTCCCGGC TCGCTTATAGAGGCT APE_1692.1 1066912 - 1067442 + | inorganic pyrophosphatase APE_1693.1 1067486 - 1068244 + | hypothetical protein APE_1694.1 1068309 - 1068761 + | cytochrome AA3 controlling protein gcvT 1068974 - 1070101 + | glycine cleavage system aminomethyltransferase T APE_1697 1070118 - 1070468 + | hypothetical protein APE_1698.1 1071034 - 1070483 - | hypothetical protein APE_1699 1071567 - 1071064 - | hypothetical protein APE_1701.1 1072304 - 1071552 - | hypothetical protein sufC 1072393 - 1073154 + | ATPase involved in Fe-S cluster formation SufC sufB 1073223 - 1074653 + | FeS assembly protein SufB sufD 1074701 - 1075876 + | FeS assembly protein SufD APE_1708 1078317 - 1075942 - | hypothetical protein APE_1711 1078509 - 1079468 + | Lrp family transcriptional regulator gltA 1079589 - 1080773 + | citrate synthase citG 1081738 - 1080845 - | 2-(5'-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase APE_1716 1081809 - 1082123 + | hypothetical protein TERM 379 1083501 - 1083521 + G 71 -11.1 -3.29461 | GGCTAGGGGAGAGGC TGCTGGCGG GCG CCGCCAACA TTATAGAAGACCTTA gatA 1082120 - 1083565 + | glutamyl-tRNA(Gln) amidotransferase subunit A gatB 1083562 - 1085022 + | aspartyl/glutamyl-tRNA amidotransferase subunit B APE_1719.1 1085136 - 1085708 + | hypothetical protein TERM 380 1085793 - 1085783 - f 76 -4 -4.98436 | TTAACACTATAAAAA CATA TTT TATG GGCGCGGGAAGCATA APE_1720 1085947 - 1086537 + | cytochrome c oxidase (ba3-type) subunit II TERM 381 1087197 - 1087181 - g 78 -3.7 -5.02074 | overlap 1087182 CTATTGTGTAAAAAA CGATG GCAGCAT CATCG ACGAGTTAACCTATG APE_1721 1086648 - 1087412 + | putative SCO1 protein APE_1722 1087480 - 1088649 + | thioredoxin APE_1722a 1088728 - 1089204 + | hypothetical protein APE_1723.1 1089816 - 1089211 - | hypothetical protein soxL 1090031 - 1090828 + | Rieske iron-sulfur protein TERM 382 1090963 - 1090987 + G 77 -10.7 -3.8211 | opp_overlap 1090961 CACGCTCGACATATG GCTGGGAGCTA TAG TAGCCTCCAGC TTCTTCTGGCTCGCC soxC 1090850 - 1092565 + | cytochrome b APE_1727.1 1092687 - 1093130 + | hypothetical protein APE_1728 1093177 - 1094730 + | ABC transporter, substrate binding protein APE_1730.1 1094740 - 1096524 + | ABC transporter, permease protein TERM 383 1097532 - 1097553 + G 73 -11.5 -3.35679 | opp_overlap 1097530 CCCGCGTAGAGCACC CCTCCCCGG CCAG CCGGTGAGG TTCTACATAGACCCC APE_1732 1096531 - 1097607 + | ABC transporter, ATP binding protein APE_1734.1 1098128 - 1097604 - | hypothetical protein APE_1735 1099473 - 1098148 - | signal recognition 54 kDa protein TERM 384 1099610 - 1099658 + H 75 -11.6 -3.05384 | gap 1, overlap 1099621 TGTGAGGCCGTTCCG GCGG-CTCCGGAGCCGCTGGGGT TACA GCCTCGGCGGCTGTGTGGACCGC TTCGCTGGGCCGAGC TERM 385 1099621 - 1099646 + H 78 -12.5 -2.87881 | overlap 1099610 TCCGGCGGCTCCGGA GCCGCTGGGGT TACA GCCTCGGCGGC TGTGTGGACCGCTTC rps13p 1099724 - 1100176 + | 30S ribosomal protein S13P rps4p 1100197 - 1100712 + | 30S ribosomal protein S4 rps11p 1100729 - 1101130 + | 30S ribosomal protein S11P rpoD 1101210 - 1102070 + | DNA-directed RNA polymerase subunit D rpl18e 1102067 - 1102429 + | 50S ribosomal protein L18e rpl13p 1102462 - 1102929 + | 50S ribosomal protein L13P rps9p 1102926 - 1103399 + | 30S ribosomal protein S9P TERM 386 1103445 - 1103466 + G 90 -15.9 -3.56099 | opp_overlap 1103443 CACATGCGGAAGACC CCTGGGCCA CCTG TGGCCCAGG TTTAGGGAGCTTGTA rpoN 1103407 - 1103640 + | DNA-directed RNA polymerase subunit N rps2P 1103649 - 1104266 + | 30S ribosomal protein S2 APE_1751 1104813 - 1104361 - | hypothetical protein APE_1753.1 1105360 - 1104797 - | hypothetical protein APE_1754.1 1106544 - 1105369 - | putative aminotransferase argS 1108695 - 1106761 - | arginyl-tRNA synthetase TERM 387 1107357 - 1107371 + g 73 -11.4 -3.34088 | TCCTGCTGCTCATCC GCCTCC CGG GGAGGC TTACTATCTCGTAGT APE_1758.1 1108968 - 1110413 + | hypothetical protein APE_1761.1 1110970 - 1110410 - | hypothetical protein APE_1763 1111662 - 1111126 - | hypothetical protein fgs 1112661 - 1111663 - | farnesylgeranyl diphosphate synthase fni 1113861 - 1112734 - | isopentenyl pyrophosphate isomerase APE_1768.1 1114607 - 1113858 - | isopentenyl phosphate kinase APE_1769.1 1115385 - 1114600 - | hypothetical protein APE_1771 1116235 - 1115390 - | hypothetical protein APE_1773.1 1117625 - 1116297 - | MatE efflux family protein APE_1775.1 1119188 - 1117686 - | carboxypeptidase APE_1777 1120883 - 1119726 - | hypothetical protein APE_1779.1 1121285 - 1121722 + | hypothetical protein TERM 388 1122419 - 1122402 - g 72 -9.9 -3.64703 | CCGCTTGCAGCCAAA GAGAGTG GAGC CACTCTC ATAAACGTGAATCCC npdA 1121796 - 1122533 + | NAD-dependent deacetylase APE_1783.1 1122958 - 1122659 - | hypothetical protein TERM 389 1123107 - 1123125 + r 74 -8.8 -3.91897 | GACACGCGGGCGTCT GCGGGG TGGAGGT CCCCGC TTTATAAATGGAGAG APE_1785.1 1123636 - 1123181 - | hypothetical protein TERM 390 1123880 - 1123861 - R 90 -4.4 -5.36441 | overlap 1123863 CGGGCATATAAAAAA TATTATCA TAAT TGATAACA CCCACAAAGTTAAAA gapN 1125523 - 1123991 - | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 391 1124710 - 1124686 - G 75 -12.2 -3.28712 | gap 1, overlap 1124689 CGGCGTCGGCTAGAA CTATGGCGGGG TCTC CCCCGCCA-AG CTCCATAATCAGCTG TERM 392 1124708 - 1124689 - G 83 -15 -2.82623 | overlap 1124686 CGTCGGCTAGAACTA TGGCGGGG TCTC CCCCGCCA AGCTCCATAATCAGC TERM 393 1125779 - 1125791 + H 72 -6.2 -4.37658 | CATAGCTTCCGGGAG GGGG CGCGA CCCC TTTTGTCCCCGCATT APE_1789.1 1125853 - 1126215 + | hypothetical protein APE_1790.1 1126859 - 1126212 - | hypothetical protein TERM 394 1126645 - 1126602 - G 75 -8.9 -3.95073 | gap 3, opp_overlap 1126602 1126630, overlap 1126603 CGCCATAGCTATAAA CTCCTCACCGTAGCCGTACACC TCC GGCG--CGGCTCCGGCGAGG-G CTGCTTTCTCAGCAA cca 1128256 - 1126859 - | tRNA nucleotidyltransferase ligT 1128807 - 1128277 - | 2'-5' RNA ligase topA 1129033 - 1131054 + | DNA topoisomerase III APE_1796.1 1131531 - 1131088 - | signal peptidase APE_1797 1131680 - 1132369 + | hypothetical protein fbpA 1132369 - 1133172 + | fructose-1,6-bisphosphatase TERM 395 1133387 - 1133404 + G 73 -12.7 -2.74488 | CTAGCCCCCCATCTA GCCTGGC ATTC GCCAGGC TAGTTGGCCTCGTTG APE_1799.1 1133176 - 1134036 + | hypothetical protein APE_1799a 1134244 - 1134483 + | hypothetical protein pelA 1135540 - 1134470 - | pelota-like protein APE_1804 1136833 - 1135577 - | hypothetical protein valS 1139385 - 1136914 - | valyl-tRNA synthetase TERM 396 1139932 - 1139922 - g 76 -4.6 -4.7889 | opp_overlap 1139922 AGAAAGACTCAAAAA CCCC AGT GGAG ATTAATAGTGAGAAC APE_1807 1139471 - 1140001 + | hypothetical protein APE_1808 1140655 - 1140164 - | hypothetical protein TERM 397 1140743 - 1140722 - H 70 -10.2 -3.18118 | overlap 1140720 1140718 TTACCGTACAATATA CGCTGCTT GCCGTG AAGCAGCG GCCAGGCTATGGAAG TERM 398 1142328 - 1142312 - g 70 -2.1 -4.75372 | overlap 1142313 1142314 AGCATCTAGGAAAAA CGCCAGC ATC GCTGGTC TAGCGAGAGAGATCT APE_1810 1140810 - 1142486 + | hypothetical protein APE_1813.1 1142953 - 1142483 - | hypothetical protein TERM 399 1142875 - 1142863 - G 72 -9.1 -3.79849 | overlap 1142867 GAACCAGAGGAACAA GGCAG GAC CTGCC GAGGCCGATTTCAGC APE_1814.1 1143873 - 1142968 - | hypothetical protein TERM 400 1144853 - 1144838 - g 81 -9 -4.39426 | TATACTGGCAGAAAA GACTGG TATA CCAGTC AAACCTGCTGCCAGC TERM 401 1144857 - 1144871 + G 71 -10 -3.59262 | opp_overlap 1144857 GGTATACCAGTCAAA CCTGCT GCC AGCAGG TTTAGAGCTATGAGG TERM 402 1144871 - 1144857 - g 75 -10 -3.70149 | opp_overlap 1144857 GGTATACCAGTCAAA CCTGCT GCC AGCAGG TTTAGAGCTATGAGG fumC 1144161 - 1145495 + | fumarate hydratase APE_1817.1 1145492 - 1145920 + | hypothetical protein rpl7ae 1146016 - 1146399 + | 50S ribosomal protein L7Ae TERM 403 1146754 - 1146739 - g 79 -5.4 -4.83169 | gap 1, opp_overlap 1146752 ATCTTGTCAGAAAAA GGC-TGC TTA GCACGCC GACAGCCGCAAGCGT truD 1146561 - 1147652 + | tRNA pseudouridine synthase D APE_1820 1149069 - 1147657 - | putative oxidoreductase TERM 404 1148532 - 1148555 + g 75 -12.4 -3.22102 | overlap 1148530 GCAGCCCCCAGAGCT CCCTGGGAAG AAGC CTCCCCAGGG TCTTGTCGAACCTCT albA 1149646 - 1149338 - | chromatin protein APE_1824 1149779 - 1150936 + | hypothetical protein APE_1825.1 1152115 - 1150985 - | hypothetical protein APE_1827.1 1152936 - 1152112 - | hypothetical protein APE_1828.1 1153778 - 1152933 - | hypothetical protein APE_1829 1154830 - 1153793 - | putative ABC transporter, ATP binding protein TERM 405 1153868 - 1153900 + g 73 -12.2 -3.08371 | gap 1, opp_overlap 1153865 1153878 1153879, overlap 1153865 1153878 AGCAACAAACACGTC CTCGAGA-GAAGGCT CGAG AGCCTTTATCTCGAG TATCTTAAACCTGTA gyaR 1155170 - 1156177 + | glyoxylate reductase TERM 406 1156345 - 1156359 + G 73 -11.4 -3.42395 | overlap 1156343 AGTGTAAGTCCTGAG GGCGAC AAG GTCGCC TATTTAGCTACTAAG APE_1832 1156264 - 1158243 + | acylamino-acid-releasing enzyme albA 1158313 - 1158597 + | chromatin protein prs 1158697 - 1159626 + | ribose-phosphate pyrophosphokinase APE_1835 1159626 - 1160678 + | putative methyltransferase rnz 1160671 - 1161603 + | ribonuclease Z TERM 407 1161726 - 1161742 + T 86 -13.7 -2.96183 | opp_overlap 1161728, overlap 1161720 1161720 1161728 CTAGCCAGGCTAGAC GACGGCC CCT GGCCGTC TATCGTGTTCTATAC TERM 408 1161728 - 1161740 + T 72 -10.5 -3.02782 | opp_overlap 1161728, overlap 1161726 1161720 1161720 AGCCAGGCTAGACGA CGGCC CCT GGCCG TCTATCGTGTTCTAT APE_1838.1 1162204 - 1161797 - | hypothetical protein APE_1840.1 1162357 - 1163478 + | hypothetical protein rps10p 1164101 - 1163787 - | 30S ribosomal protein S10P TERM 409 1164363 - 1164350 - R 70 -3.7 -4.62069 | opp_overlap 1164350 1164358 1164359, overlap 1164358 1164359 TGGTGAGCCTAAAAA CAGGG AAAG CCCGG GTTTAATCCGGGGTT tuf 1165747 - 1164434 - | elongation factor 1-alpha rps7p 1166438 - 1165821 - | 30S ribosomal protein S7P APE_1848.1 1166531 - 1167001 + | hypothetical protein rps12P 1167540 - 1167097 - | 30S ribosomal protein S12P APE_1850 1168064 - 1167630 - | transcription elongation factor NusA-like protein rpl30e 1168368 - 1168066 - | 50S ribosomal protein L30e rpoA2 1169627 - 1168404 - | DNA-directed RNA polymerase subunit A'' rpoA1 1172317 - 1169642 - | DNA-directed RNA polymerase subunit alpha TERM 410 1172369 - 1172380 + r 74 -5.8 -4.46212 | overlap 1172372 GGGTAATCATGTATA GTCG CCGA CGAC TTTTCTGATGACGGA rpoB 1175869 - 1172360 - | DNA-directed RNA polymerase subunit beta rpoH 1176143 - 1175871 - | DNA-directed RNA polymerase subunit H TERM 411 1176269 - 1176299 + H 100 -14.6 -4.09685 | opp_overlap 1176257 AGAGGCCGGGAGTGG GCCCGTAGCTCAGC CCG GCAGAGCGGCGGGC TTTTAACCCGTAGAG TERM 412 1176404 - 1176383 - H 76 -10.8 -3.28712 | opp_overlap 1176398 1176403 GCGGGCCCGCCACAA CAGCCCCC GCCCAA GGGGGCCG AGCATAGGGCTCCTC APE_1861.1 1176718 - 1177470 + | hypothetical protein tbp 1178163 - 1177552 - | transcription factor TERM 413 1177740 - 1177765 + g 78 -8.9 -4.13728 | opp_overlap 1177740 GTTCCGGCTCATATA GGCTGTTCTCG AACT CGAGTGCGGCC TTTTCAAGATCTATA APE_1864.1 1178791 - 1178318 - | hypothetical protein APE_1865.1 1179057 - 1180157 + | PflA-like protein APE_1866.1 1180992 - 1180288 - | hypothetical protein mscS 1182053 - 1181193 - | small conductance mechanosensitive channel MscS APE_1868.1 1182823 - 1182068 - | hypothetical protein hmgA 1184155 - 1182890 - | 3-hydroxy-3-methylglutaryl-coenzyme A reductase APE_1871.1 1184528 - 1184127 - | hypothetical protein APE_1872.1 1185674 - 1184541 - | putative 3-ketoacyl-CoA thiolase APE_1873.1 1186800 - 1185715 - | hypothetical protein TERM 414 1185988 - 1186021 + g 72 -4.5 -4.60924 | gap 1 GAAGGGTGTTACCAG GCCGGGCTTCAC-CTG CTC CATAGTGAACCCCAGC TTTTTAGCAACTTTA APE_1874.1 1186917 - 1187987 + | hypothetical protein APE_1876 1188128 - 1188865 + | hypothetical protein APE_1877.1 1189632 - 1188871 - | subfamily S26B peptidase ctaB 1189799 - 1190716 + | protoheme IX farnesyltransferase APE_1880.1 1190742 - 1191521 + | hypothetical protein APE_1882.1 1193994 - 1191556 - | hypothetical protein TERM 415 1191605 - 1191583 - G 70 -12 -2.80959 | overlap 1191582 GAATGCTAACACAAC CCCTCCTAGC CCA GCTAGTAGGG CCAGCACGCTAAGGC APE_1882a 1194127 - 1194252 + | hypothetical protein APE_1885 1194314 - 1195141 + | 5'-methylthioadenosine phosphorylase II APE_1886.1 1195116 - 1195973 + | hypothetical protein APE_1887.1 1196027 - 1197316 + | hypothetical protein APE_1889 1197316 - 1197990 + | hypothetical protein APE_1889a 1198068 - 1198322 + | hypothetical protein APE_1891.1 1199065 - 1198319 - | ABC transporter, ATP binding protein TERM 416 1198558 - 1198536 - G 83 -14.9 -2.80074 | opp_overlap 1198535 1198534, overlap 1198533 1198531 GCCTCTAGAACATCA GCCCTCGAC TCCGG GTCGAGGGC GCTTGTAGGCTCGTC APE_1892 1199734 - 1199072 - | ABC transporter, permease protein APE_1893.1 1200689 - 1199838 - | ABC transporter, substrate binding protein APE_1894 1200817 - 1201536 + | hypothetical protein APE_1895.1 1203273 - 1201618 - | flagellar protein J-like protein APE_1896.1 1205020 - 1203290 - | flagellar protein I-like protein APE_1898 1205772 - 1205035 - | flagellar accessory protein FlaH APE_1899 1206328 - 1205780 - | hypothetical protein APE_1901 1206820 - 1206335 - | hypothetical protein TERM 417 1206443 - 1206433 - G 71 -6.8 -4.17048 | GGGGGTTCAAAACAA GCTC TAT GAGC TCCCCTACCTCCCAT APE_1902.1 1207581 - 1206802 - | hypothetical protein TERM 418 1207075 - 1207050 - G 72 -4.6 -4.57569 | overlap 1207051 TTATCTTCTCAAAAA CCTCGGGAGG CATACT CTCCCCGAGA CTCCAGAGGGTCTTA APE_1905 1208331 - 1207720 - | flagellin-like protein APE_1907 1209093 - 1208353 - | flagellin-like protein APE_1908.1 1209888 - 1209319 - | hypothetical protein APE_1909.1 1210682 - 1209942 - | hypothetical protein APE_1911.1 1211578 - 1210694 - | hypothetical protein TERM 419 1210837 - 1210886 + g 91 -17.1 -3.62096 | gap 1 CTCCCAGCCCGTCCT CCCTGGCCTCGAACCCGAGGCTCC TGA GGAGC-TCGGCGGCGAGGCTGGGG TTTGAGGTCCTCAGC APE_1914.1 1212812 - 1211628 - | putative MFS transporter APE_1917 1214175 - 1212850 - | peptidase TERM 420 1214248 - 1214220 - R 74 -9.8 -3.53012 | gap 1, opp_overlap 1214229, overlap 1214221 1214224 CCGCGGGTTGTTAAA GCTAGAGTATAGC CTAG GCTATACTCTA-C AATGACTACTGCGTA TERM 421 1214245 - 1214224 - R 73 -11.7 -2.64155 | opp_overlap 1214229, overlap 1214220 1214221 GGGTTGTTAAAGCTA GAGTATAGC CTAG GCTATACTC TACAATGACTACTGC TERM 422 1214492 - 1214467 - R 77 -12.5 -2.7035 | overlap 1214464 CGCAGCCATACACCA TGCTGCCCGCC CCCA GGCGAGCAGCC TACGGCCTCGGGCGA TERM 423 1214589 - 1214636 + r 74 -7.5 -4.07687 | gap 1, opp_overlap 1214575, overlap 1214592 1214618 ACCCCGTCTTCTACG GGAGCCCTCG-TGGACGCCGGC ACCAG GCCGGCGCCCAACGGCCGCCTC TTTTCGGGGAGGGGT TERM 424 1214618 - 1214634 + r 73 -9.3 -3.63744 | overlap 1214592 1214589 CGCCGGCACCAGGCC GGCGCCC AAC GGCCGCC TCTTTTCGGGGAGGG TERM 425 1214927 - 1214962 + r 76 -11 -3.29144 | CGAGGTAGCAAACCG CGGGGTCGATGGGGGC TCTC GCCCGCGACGACTCTG TTATCCCCGGGGTAA TERM 426 1214962 - 1214978 + r 77 -7.3 -4.57353 | GCCCGCGACGACTCT GTTATCC CCG GGGTAAC TTTTCTGTCGTGCCC TERM 427 1215032 - 1215078 + r 76 -7.8 -4.19506 | CGTGCGCTAGGCCAC GGTTTCCCGGCCGGACCCCT TGCTTTC AGGGGTCCGGTCAGGCCGGC TTTTGCCCTTGCACT TERM 428 1215192 - 1215236 + r 78 -12.7 -2.87501 | opp_overlap 1215174 1215175, overlap 1215193 1215195 CCCACCCGACGCTGT CCCCCGCCCACCCGGGG CGGGGTTAGGC CCCCGGGCGGGGGTGGG TGGTGTTTCATGGAC TERM 429 1215193 - 1215241 + r 79 -10.1 -3.72893 | gap 1, opp_overlap 1215174 1215175, overlap 1215192 1215195 CCACCCGACGCTGTC CCCCGCCCACCC-GGGGCGGGG TTAGGC CCCCGGGCGGGGGTGGGTGGTG TTTCATGGACGCCTC TERM 430 1215195 - 1215239 + r 82 -11.3 -3.44848 | gap 1, opp_overlap 1215174 1215175, overlap 1215192 1215193 ACCCGACGCTGTCCC CCGCCCACCC-GGGGCGGGG TTAGGC CCCCGGGCGGGGGTGGGTGG TGTTTCATGGACGCC APE_1921 1215983 - 1215480 - | homing endonuclease I-ApeII TERM 431 1216369 - 1216395 + r 83 -10 -4.07568 | GTCGGTTCTCGGTAC GGGCGCGGGGGA TCC TTCCCCACCCCC TTTTCAAGGGCCCCA TERM 432 1217578 - 1217614 + r 73 -11.4 -2.66272 | gap 1, overlap 1217576 1217576 GGCCCTATTAGGACC CCGCCCCTC-GCCGGGG TCGC CCCCGGCTGCGGGCCTG TCGGTTTCCCTGCGC TERM 433 1217727 - 1217740 + r 78 -9.5 -3.90856 | overlap 1217733 ATCCCCCTCGTACTC CCCGG TCGC CCGGG TTTCCTTCGGGGGTT TERM 434 1217750 - 1217762 + r 71 -9.1 -3.53012 | overlap 1217733 CCCGGGTTTCCTTCG GGGGT TTC ACCCC TTTCGGGCCGCACCG TERM 435 1217811 - 1217822 + r 72 -7.2 -4.2354 | CAGGCTCTTTTCACC CCCC TCCC GGGG TTCTTTTCAGCTTTC TERM 436 1218068 - 1218100 + r 81 -11.2 -3.63627 | overlap 1218072 1218073 CAGGGCCGCAACCCC TCATCCCCCCACGG TCCTC CCGTGGGGGATTGG TTTGGGCTCTCCCCC TERM 437 1218072 - 1218096 + r 86 -12.8 -3.53745 | overlap 1218068 1218073 GCCGCAACCCCTCAT CCCCCCACGG TCCTC CCGTGGGGGA TTGGTTTGGGCTCTC TERM 438 1218073 - 1218095 + r 100 -16.3 -2.71765 | overlap 1218072 1218068 CCGCAACCCCTCATC CCCCCACGG TCCTC CCGTGGGGG ATTGGTTTGGGCTCT TERM 439 1218133 - 1218145 + r 76 -9.1 -3.73387 | overlap 1218120 TCGGTCGCCCCTACT CAGGG GAT CCCTG TTGGTTTCTTCTCCT TERM 440 1218872 - 1218892 + r 74 -11.1 -3.16742 | opp_overlap 1218857 GCAGGGACGTATTCA CCGCGCG ATGATGA CGCGCGG TTACTAGGGATTCCA APE_1929.1 1219953 - 1219285 - | homing endonuclease I-ApeI TERM 441 1220351 - 1220309 - H 73 -12 -2.62983 | gap 2, opp_overlap 1220319 1220320 CCTAGCCCGACAGTA TCCCCGCC--ACTCCCCGGG TTGAG CCCGGGGCTTTAGGCGGGGA CTTGTCGAGCCGGCT TERM 442 1220319 - 1220339 + H 74 -10.3 -3.53343 | opp_overlap 1220309, overlap 1220320 CAGTATCCCCGCCAC TCCCCGGGT TGA GCCCGGGGC TTTAGGCGGGGACTT TERM 443 1220320 - 1220338 + H 85 -13.8 -2.71791 | opp_overlap 1220309, overlap 1220319 AGTATCCCCGCCACT CCCCGGGT TGA GCCCGGGG CTTTAGGCGGGGACT TERM 444 1220498 - 1220482 - H 100 -15.1 -4.10657 | TTACAGCGGGGAAAA GCCCCCC CAA GGGGGGC ACTCGGGGTAGCCCC TERM 445 1220685 - 1220715 + H 71 -9.5 -3.53012 | opp_overlap 1220702 1220703, overlap 1220686 AGCCCCATCCTCGGG CGGACCGCGGGCG ATAAC CCCCCGCGGCCCC TTTCGGCGGAGGACC TERM 446 1220686 - 1220714 + H 81 -13 -2.71712 | opp_overlap 1220702 1220703, overlap 1220685 GCCCCATCCTCGGGC GGACCGCGGGCG ATAAC CCCCCGCGGCCC CTTTCGGCGGAGGAC APE_1930 1221723 - 1222481 + | hypothetical protein TERM 447 1222758 - 1222730 - T 82 -11.7 -3.52102 | AGGTCACGCAGATAA CCCTGCCAACGGC TAA ACCATTGGTAGGG GGCTGTGAAGAGGAT APE_1932.1 1224056 - 1222836 - | ABC transporter, permease protein APE_1934.1 1224820 - 1224053 - | ABC transporter, ATP binding protein APE_1936.1 1224924 - 1225562 + | hypothetical protein APE_1937.1 1226303 - 1225515 - | hypothetical protein APE_1939.1 1227213 - 1226374 - | hypothetical protein hxlB 1227331 - 1227969 + | 6-phospho-3-hexuloisomerase APE_1941 1227966 - 1228826 + | hypothetical protein APE_1943.1 1228845 - 1229777 + | hypothetical protein APE_1946.1 1229879 - 1230226 + | hypothetical protein APE_1947 1230384 - 1230845 + | hypothetical protein APE_1948 1231048 - 1231395 + | hypothetical protein APE_1949.1 1232069 - 1231434 - | zinc-finger protein ZPR1-like protein APE_1950.1 1232723 - 1232193 - | small heat shock protein TERM 448 1233707 - 1233693 - g 75 -5.6 -4.56961 | opp_overlap 1233694, overlap 1233694 AATACCTAGACAAAA GGCCTG ACA CAGGCA GAGTTGTTAGGCTTC TERM 449 1233833 - 1233820 - g 75 -9.5 -3.91196 | overlap 1233815 CGCATATACAGTAAA CCCCG TCCA CGGGG GCGGTATGGGCTATG APE_1952.1 1232924 - 1234315 + | hypothetical protein APE_1954 1234939 - 1234364 - | N-terminal acetyltransferase TERM 450 1235269 - 1235255 - g 87 -7.1 -4.87665 | CCCCATCGATAAAAA TCCGC GGCAG GCGGA TAAGCCTCGAGGACG APE_1955.1 1235083 - 1235430 + | hypothetical protein APE_1956 1236639 - 1235437 - | hypothetical protein APE_1956a.1 1236819 - 1237019 + | hypothetical protein TERM 451 1237619 - 1237650 + T 95 -13.6 -3.28924 | overlap 1237621 1237623 CCTAGCCCGTGGAGA GGCCGTAGGCCCGG CTTC CCGGGCCGATGGGC TTGTCGAGCCGGATC nadE 1238565 - 1237705 - | NH(3)-dependent NAD(+) synthetase TERM 452 1237832 - 1237850 + g 78 -8.8 -4.15044 | overlap 1237834 ACCTTAGCTCTCTCT AACCCCGT TGC ACGGGGTA TTTCTTCCCAGGGGA TERM 453 1237834 - 1237848 + g 78 -11.4 -3.6761 | overlap 1237832 CTTAGCTCTCTCTAA CCCCGT TGC ACGGGG TATTTCTTCCCAGGG dfp 1239883 - 1238645 - | coenzyme A biosynthesis bifunctional protein CoaBC TERM 454 1239022 - 1238994 - G 71 -10.1 -3.53091 | ATCTTGCCCTCGAAA GCCCCGGCTGGCC TGA AGTCTACCGGGGC AGCCGCTGCAACCAC TERM 455 1239577 - 1239615 + g 73 -10.9 -3.3382 | CCAGGGTGGAGAGTG TAGCCGGAGCCACAACC ATGGC GGAGGCGGCTCTGGCTA TTGATATGTGCTCGA APE_1961 1240728 - 1239910 - | oxidoreductase TERM 456 1240734 - 1240722 - G 71 -6.9 -4.23758 | AGTCGATAGGGAAAA GCGGC ATG ACCGC AACCCCAAGTATAAT TERM 457 1241465 - 1241445 - g 73 -12.5 -2.76696 | overlap 1241444 GCTGGGGCTAATAAT GGGTGGGGC CTG GCCCAACCC CCTGGAAAGGGGGGC glyA 1240810 - 1242129 + | serine hydroxymethyltransferase APE_1963.1 1242464 - 1243636 + | alcohol dehydrogenase APE_1964.1 1243671 - 1244072 + | hypothetical protein APE_1965.1 1244545 - 1244183 - | hypothetical protein TERM 458 1244461 - 1244477 + g 74 -7.3 -4.32177 | GGCTGCCCAACCTGC GTTTGAG CCT CTCAAGC TTTATTATAACGTCC APE_1966 1245053 - 1244724 - | hypothetical protein APE_1967.1 1245775 - 1245179 - | hypothetical protein APE_1968 1246866 - 1245916 - | carbamate kinase APE_1971.1 1248250 - 1246898 - | hypothetical protein APE_1973.1 1248422 - 1250533 + | hypothetical protein APE_1975.1 1250612 - 1251112 + | hypothetical protein TERM 459 1251163 - 1251145 - f 72 -10.2 -3.30124 | GTCCACCGTTCACAA GCCCCCCC GCC AGGGAGGC CTCCCCCTGGCTAGG serS 1251310 - 1252692 + | seryl-tRNA synthetase APE_1977.1 1253012 - 1252689 - | hypothetical protein APE_1979.1 1253466 - 1253050 - | hypothetical protein TERM 460 1253501 - 1253512 + r 72 -7.2 -4.18018 | AACTGTTAAAACCCG GGGG TTAT CCCC TTTTCCCTCCCCGAA APE_1979a 1253723 - 1253505 - | hypothetical protein APE_1980.1 1254495 - 1253689 - | competence damage-inducible protein A APE_1984.1 1254742 - 1255326 + | hypothetical protein APE_1984a 1255428 - 1255667 + | hypothetical protein APE_1985.1 1256009 - 1255662 - | hypothetical protein nadM 1256097 - 1256615 + | nicotinamide-nucleotide adenylyltransferase prf1 1257733 - 1256612 - | peptide chain release factor 1 TERM 461 1257897 - 1257915 + H 72 -11.8 -2.53876 | TCTTTGGGGTGCCGG GATGGTAG AGG CTACCATC TACGTTGGCATAGAC APE_1990 1257898 - 1258233 + | hypothetical protein argF 1259174 - 1258230 - | ornithine carbamoyltransferase APE_1995.1 1259549 - 1260130 + | hypothetical protein APE_1996.1 1261167 - 1260400 - | hypothetical protein TERM 462 1261385 - 1261401 + r 76 -10.8 -3.33265 | overlap 1261380 GGCTTCCCTCGGGAA CCCCGG GGTCA CCGGGG TTAGGTTTATGAACT APE_1998 1262843 - 1261611 - | hypothetical protein TERM 463 1261715 - 1261728 + g 70 -3.7 -4.56775 | overlap 1261708 CGAGGGCGTCCAGCT CGCCC GGCT GGGGG TTTTTGGCGAGGGGT APE_1999 1263992 - 1262844 - | hypothetical protein APE_2001.1 1264446 - 1263976 - | hypothetical protein APE_2002 1265435 - 1264452 - | cytosine-specific DNA methylase APE_2004.1 1265979 - 1265410 - | transcription factor E APE_2006.1 1266514 - 1265963 - | tRNA ribose 2'-O-methylase hflX 1267679 - 1266561 - | putative GTP-binding protein HflX APE_2011.1 1268184 - 1267669 - | putative HTH-type transcriptional regulator pan 1268322 - 1269551 + | proteasome-activating nucleotidase TERM 464 1269575 - 1269603 + T 100 -13 -3.9398 | TTCAACCCTCCCACC CCCACCAGGGGC CGCGC GCCCCCGGGGGG TTTATGGGCTTCTAG TERM 465 1269611 - 1269623 + T 70 -5.5 -4.29829 | overlap 1269618 CCGGGGGGTTTATGG GCTTC TAG GAGGC TTTCTTCCTGCTTCT APE_2015.1 1269980 - 1269615 - | hypothetical protein APE_2017 1270066 - 1271604 + | 7-cyano-7-deazaguanine tRNA-ribosyltransferase APE_2018.1 1272340 - 1271606 - | hypothetical protein APE_2020 1272798 - 1272358 - | hypothetical protein APE_2021.1 1272982 - 1273401 + | FUR family transcriptional regulator APE_2021a 1273480 - 1273758 + | hypothetical protein APE_2022 1273917 - 1275101 + | hypothetical protein APE_2022a 1275199 - 1275546 + | hypothetical protein csd 1277044 - 1275809 - | cysteine desulfurase TERM 466 1275954 - 1276005 + g 93 -13.1 -4.14739 | gap 2 GCGCAGTGTAGGCCT GTCCTCACG-GCTATGCC-CCTCCT GTCG AGGAGGAGGCCTAGCTCGTCGGGGC TTTTCAGGTGGGTGG TERM 467 1277090 - 1277058 - H 80 -11.9 -3.2789 | overlap 1277056 1277054 1277059 ATAAGGCTAAAGACA CCCCCGGACAGCGGC TAG GCCGCTAACCAGGAA GAATAGTATGAACCA TERM 468 1277089 - 1277059 - H 81 -13.2 -2.56011 | overlap 1277058 1277056 1277054 TAAGGCTAAAGACAC CCCCGGACAGCGGC TAG GCCGCTAACCAGGA AGAATAGTATGAACC TERM 469 1278615 - 1278599 - H 82 -9.3 -4.18367 | overlap 1278600 TATCACATAGATAAA CCCCCGG CCC CCGGGGC TTACCACACCGGCCC TERM 470 1278614 - 1278600 - H 79 -12.8 -3.10297 | overlap 1278599 ATCACATAGATAAAC CCCCGG CCC CCGGGG CTTACCACACCGGCC TERM 471 1278651 - 1278624 - H 85 -14 -2.78384 | CCGGGGCTTACCACA CCGGCCCCCGGC CTGT GCCGGGGGCCTC GCCATAAGGGGGGTT APE_2029.1 1278941 - 1280023 + | hypothetical protein APE_2032.1 1280039 - 1281112 + | hypothetical protein cobY 1281109 - 1281660 + | nucleoside triphosphate:adenosylcobinamide-phosphate guanylyltransferase TERM 472 1281704 - 1281680 - gf 86 -12.8 -3.54741 | GAGTAGCCCCTCAAA CCCCCTGGGC CCCCC GCCCAGGGTG GACAACATTATCCTA cobD 1281627 - 1282691 + | threonine-phosphate decarboxylase cobS 1282673 - 1283458 + | cobalamin synthase cbiB 1283451 - 1284413 + | cobalamin biosynthesis protein APE_2041.1 1284410 - 1285366 + | putative asparagine synthetase TERM 473 1285918 - 1285951 + G 70 -3.7 -4.56775 | overlap 1285918 1285919 CGTTGCGGGGGAGTA CGGCGAGTTCCACAC GCTC GTGTATAACGCGCCC TTTTTCCAAGAGCCT APE_2042.1 1285370 - 1286068 + | hypothetical protein hypE 1287059 - 1286022 - | putative hydrogenase expression/formation protein HypE metE 1288038 - 1287040 - | methionine synthase APE_2050.1 1289051 - 1288041 - | putative methylcobalamin:homocysteine methyltransferase APE_2052.1 1289226 - 1290395 + | GTP-binding protein APE_2054.1 1290404 - 1291081 + | hypothetical protein APE_2055.1 1292027 - 1291128 - | putative carbon-nitrogen hydrolase TERM 474 1291609 - 1291589 - G 73 -3.1 -4.82901 | overlap 1291590 CCCCTCCCAGAAAAA GCTCCAAGG CGG CCTCGGGGA AACTCCAGAAGTCGG TERM 475 1292263 - 1292236 - R 71 -10.6 -2.9162 | gap 1, overlap 1292225 1292224 1292233 GAATCCGGGAAACGA TCCCGGGAAGGCA TGT TGCCT-CCGGGGA TGAGTGAGGCGAACT APE_2056.1 1292745 - 1292290 - | putative NUDIX hydrolase APE_2057.1 1292832 - 1293155 + | hypothetical protein APE_2058 1293511 - 1293131 - | hypothetical protein APE_2059.1 1293666 - 1294301 + | hypothetical protein APE_2060.1 1295473 - 1294298 - | ABC transporter, ATP binding protein APE_2062.1 1296197 - 1299136 + | ribonucleotide reductase, B12-dependent thyX 1299240 - 1300217 + | thymidylate synthase ThyX TERM 476 1300311 - 1300289 - T 72 -9.8 -3.38046 | overlap 1300287 GCTCCACTCTAAACA GACCGCCGAG GCA CTCGACAGCC AGCCGGCTGTGCGGG APE_2065.1 1300590 - 1300336 - | hypothetical protein TERM 477 1300561 - 1300525 - G 79 -13.5 -3.05384 | opp_overlap 1300525 GGGTTCCCGAGGGAA GCCCCCCAGGGGCTTCC GTA GGCGGCCCCGGGGAGAC CGTGATGAACCCAGC APE_2066.1 1301818 - 1300661 - | glycosyl transferase, group 1 thrB 1301965 - 1302906 + | homoserine kinase metB 1302913 - 1304082 + | cystathionine gamma-synthase APE_2069.1 1304198 - 1304530 + | hypothetical protein APE_2070 1305008 - 1304586 - | hypothetical protein APE_2071.1 1305546 - 1305010 - | purine phosphoribosyltransferase TERM 478 1305944 - 1305958 + r 85 -11.4 -3.66844 | overlap 1305951 1305952 1305953 TGTGGAGTGGAGGAG CCCTGG GTA CCAGGG TTGTTGAACTCTGGA rps17E 1306210 - 1305986 - | 30S ribosomal protein S17e TERM 479 1306097 - 1306113 + g 73 -2.9 -4.81212 | ACTTCTATACTCTAT GAGCTGT GAC ACGACTC TTTTATTATGCTCAA APE_2072.1 1306374 - 1308020 + | thermosome beta subunit TERM 480 1308021 - 1308039 + F 77 -6 -4.66953 | opp_overlap 1308022, overlap 1308022 1308038 GGAGAGGAGGAGTAA ACCGTTAA ACA TTAACGGG TTTTTAAACTATTAA TERM 481 1308038 - 1308022 - f 76 -9.5 -3.81287 | opp_overlap 1308022 1308021 GAGAGGAGGAGTAAA CCGTTAA ACA TTAACGG GTTTTTAAACTATTA tyrS 1308214 - 1309299 + | tyrosyl-tRNA synthetase APE_2075 1310715 - 1309321 - | hypothetical protein TERM 482 1309632 - 1309649 + g 74 -6.9 -4.39426 | TCTCATCGTATCTGA GGGGCGG TCTT TTGCCCC TTTTCTCAGACTCTC APE_2077.1 1311165 - 1311890 + | hypothetical protein APE_2078 1311872 - 1313185 + | hypothetical protein nudF 1313206 - 1313676 + | ADP-ribose pyrophosphatase APE_2081.1 1313751 - 1314869 + | aminopeptidase APE_2084.1 1315983 - 1314943 - | hypothetical protein APE_2085.1 1316110 - 1316529 + | translation initiation factor IF-5A APE_2086 1317499 - 1316504 - | hypothetical protein APE_2086a 1317716 - 1317492 - | hypothetical protein TERM 483 1318585 - 1318570 - g 77 -11.8 -3.48924 | opp_overlap 1318576 CGATGGTTCACATAA CCGGGG TGAC CCCCGG GGACCCTGGTGACAT APE_2087.1 1317807 - 1319015 + | putative aconitase, subunit APE_2089 1319045 - 1319443 + | putative aconitase, subunit tmk 1320049 - 1319423 - | thymidylate kinase APE_2091.1 1321043 - 1320081 - | ATP-dependent glucokinase APE_2093 1321206 - 1322750 + | hypothetical protein APE_2094.1 1323302 - 1322709 - | hypothetical protein APE_2096.1 1324630 - 1323371 - | DNA primase APE_2098.1 1327163 - 1324752 - | DNA polymerase II TERM 484 1327169 - 1327189 + r 72 -9.7 -3.32844 | opp_overlap 1327165 1327166, overlap 1327170 AACCCTTCAAACCCG CCCCCCAAT TCT ATTGGGGGC TTGTGGGGTGGAAAA TERM 485 1327170 - 1327188 + r 81 -13.2 -2.59564 | opp_overlap 1327165 1327166, overlap 1327169 ACCCTTCAAACCCGC CCCCCAAT TCT ATTGGGGG CTTGTGGGGTGGAAA APE_2102 1327557 - 1327231 - | hypothetical protein TERM 486 1327381 - 1327371 - G 74 -6.8 -4.26076 | CCAGCTGGACGAAAA GCTG GGG CAGC CATGTCATCCCGAGA APE_2104.1 1328454 - 1327612 - | endonuclease IV udp 1328521 - 1329369 + | uridine phosphorylase TERM 487 1329870 - 1329856 - g 71 -7.1 -4.14472 | opp_overlap 1329856, overlap 1329847 1329857 TCAAGAGGCCGAAAA GCCTG TGGAG CAGGC TCCCCCGGGTTGACT APE_2106.1 1329354 - 1330274 + | ATP-dependent 6-phosphofructokinase APE_2108 1331479 - 1330271 - | acetyl-CoA acetyltransferase APE_2109 1332894 - 1331551 - | hypothetical protein APE_2110 1333121 - 1333864 + | hypothetical protein TERM 488 1334116 - 1334091 - g 88 -16.9 -2.94099 | GGGTGTCAGGATAGA GCCTCCCCCCA TACC TGGGGAGAGGC TGGCCTCAGTCCTAG APE_2112.1 1333897 - 1334295 + | hypothetical protein APE_2113 1334718 - 1334284 - | hypothetical protein TERM 489 1334895 - 1334867 - H 70 -6.8 -4.10566 | gap 2 ATATTATTACACAAA GCAGCGCCTCTCAC GAG GC-AGAGGC-CTGC GACACCTCGTGGTGA APE_2115.1 1334977 - 1336152 + | hypothetical protein APE_2118.1 1336444 - 1336118 - | hypothetical protein APE_2119.1 1338215 - 1336767 - | hypothetical protein gcvPB 1340504 - 1338942 - | glycine dehydrogenase subunit 2 gcvPA 1341907 - 1340510 - | glycine dehydrogenase subunit 1 TERM 490 1342344 - 1342314 - g 73 -12.7 -2.77167 | overlap 1342305 1342320 CAAGAAGTTTAAGGA TGAGAACAGGCTG GCCTT CAACCTGCTCTCA GACTATAACAGGGAG bcp 1342066 - 1342551 + | thiol peroxidase TERM 491 1342562 - 1342529 - f 75 -5.1 -4.65916 | gap 1, overlap 1342531 GGGAGGCTAACAAAA TAGCGGGG-GAGCTGG TGG CCTGACCTCCCCGCAA GCAGCTTCCAGCTTC TERM 492 1342560 - 1342531 - f 72 -7.7 -3.94438 | gap 1, overlap 1342529 GAGGCTAACAAAATA GCGGGG-GAGCTGG TGG CCTGACCTCCCCGC AAGCAGCTTCCAGCT TERM 493 1344824 - 1344803 - g 75 -10.1 -3.65714 | AAAGTATATTTTAAA GTGGACGGG GAGG CCCGTCTAC CTACACGAGCTCGTG APE_2126.1 1342983 - 1344902 + | 2-oxoacid:ferredoxin oxidoreductase alpha subunit APE_2128 1344892 - 1345848 + | 2-oxoglutarate ferredoxin oxidoreductase subunit beta APE_2129.1 1345885 - 1346352 + | hypothetical protein TERM 494 1346363 - 1346345 - T 73 -3.9 -4.82901 | gap 1 TCCTGGCTATAAAAA CGCCT-TA GTGG TAGAGGCG GAGCGGCCGGTTCCC hemL 1347689 - 1346397 - | glutamate-1-semialdehyde aminotransferase TERM 495 1346874 - 1346888 + g 72 -6.4 -4.28762 | CGCCGCAACAGGCAT GCCGTT TGC AATGGC TTTTCCTACAGTTGT TERM 496 1348440 - 1348454 + G 72 -6.4 -4.26903 | TGGGGATACTGCTTC CAGCTA TAA TGGCTG TTTTCGTGGCCTACG TERM 497 1349066 - 1349019 - g 70 -4.1 -4.6759 | gap 2, opp_overlap 1349052 1349062, overlap 1349020 1349031 AAGAGTCTAAGAAAA GGCGCCTGAAAGG-GCT-GCCCG ATAG CGAGCTACCGCCTCTCAGGCCTC TCCTCGTCAGGCTCT APE_2133 1347941 - 1350136 + | hypothetical protein TERM 498 1350414 - 1350439 + G 73 -12.5 -2.75844 | opp_overlap 1350411, overlap 1350413 ATGGGTACAGGATCG CCCGGCGGGAT TTAC AACCCGCTGGG GTTTAAGATAGCAGA APE_2136.1 1350291 - 1351271 + | TRAP transporter, solute-binding component APE_2138 1351676 - 1351308 - | hypothetical protein APE_2139.1 1352417 - 1351746 - | hypothetical protein APE_2139a 1352739 - 1352524 - | twin arginine-targeting protein translocase glnA 1354205 - 1352829 - | glutamine synthetase TERM 499 1353073 - 1353084 + g 74 -2.2 -5.02074 | overlap 1353068 TCATAGGGATCTGGC GGAG CGAG CTTC TTTTTTACACCGTCG APE_2144.1 1354540 - 1357245 + | ATP-dependent helicase TERM 500 1357595 - 1357576 - f 80 -11.4 -3.30771 | GCAGACTCGTCACAA CCCTCCCC AGCT AGGGAGGG CTCGACTCCCGGCTA APE_2146.1 1357720 - 1358931 + | hypothetical protein prpD 1360353 - 1358977 - | 2-methylcitrate dehydratase TERM 501 1359680 - 1359666 - G 85 -11.4 -4.07687 | opp_overlap 1359668 ACTTGCCCTCGAAAA CAGGGC TAG GCCCTG TCATCCCCTTCCATG APE_2149.1 1360739 - 1361551 + | ribulose-1,5-biphosphate synthetase APE_2151.1 1363059 - 1361548 - | serine protease TERM 502 1363040 - 1363027 - G 70 -2.3 -4.76312 | opp_overlap 1363027, overlap 1363017 1363019 GAGAAGAGGTAAAAA CCGCT TCAG ACCGG CTTTCCCCATACTTT APE_2153.1 1363879 - 1363064 - | erythrocyte band 7 integral membrane protein APE_2154.1 1364030 - 1364887 + | twin-arginine translocation protein, TatC APE_2154a 1365070 - 1364891 - | twin arginine-targeting protein translocase APE_2154b 1365604 - 1365837 + | hypothetical protein APE_2155.1 1365828 - 1366559 + | hypothetical protein APE_2156.1 1367484 - 1366570 - | hypothetical protein APE_2157.1 1367629 - 1368375 + | hypothetical protein APE_2158.1 1369680 - 1368481 - | acyl-CoA dehydrogenase APE_2161 1371393 - 1369924 - | hypothetical protein APE_2161a 1371639 - 1371860 + | hypothetical protein cstA 1371873 - 1373681 + | carbon starvation protein A APE_2163 1373731 - 1374054 + | hypothetical protein APE_2164.1 1374097 - 1374468 + | arsenical pump-driving ATPase APE_2165 1374459 - 1375052 + | arsenical pump-driving ATPase alaS 1377768 - 1375066 - | alanyl-tRNA synthetase rpl12p 1378332 - 1377997 - | 50S ribosomal protein L12P TERM 503 1378108 - 1378150 + g 80 -14.6 -2.72379 | opp_overlap 1378139, overlap 1378107 TGCTGCTGGTGCCGC TGCCGGGGCGGCCGCTGCGG CTG CCACAGGAGCCGCCACGGCC TGCTTCAGCACTTCC rplP0 1379411 - 1378386 - | acidic ribosomal protein P0 TERM 504 1378641 - 1378656 + g 73 -11.8 -3.1355 | GGCAGCTAGGGCGGA GGCGGC GAGA GCCGCC TTCACTATGGCTGAC rpl1P 1380078 - 1379425 - | 50S ribosomal protein L1P rpl11p 1380450 - 1380124 - | 50S ribosomal protein L11P nusG 1380988 - 1380533 - | transcription antitermination protein NusG secE 1381177 - 1380995 - | preprotein translocase SecE subunit APE_2177.1 1381716 - 1381201 - | hypothetical protein TERM 505 1381820 - 1381832 + r 85 -3.4 -5.4505 | GGAACTGCGGTTGAG GAGT TAGCT ACTC TTTTTTGTTAACAGG APE_2178.1 1382665 - 1381823 - | hypothetical protein TERM 506 1383227 - 1383213 - g 72 -8.5 -3.85817 | ATCTCCTTGCAGAAA CCGCC AGGAA GGCGG GCCTCGTCATAGCTG APE_2180.1 1382732 - 1383484 + | hypothetical protein TERM 507 1383563 - 1383549 - f 81 -12.8 -3.21912 | GCCTTAACCGATGAA CCGCGG CAT CCGCGG CGGGCTACAATCAGG TERM 508 1383937 - 1383895 - g 70 -4.7 -4.51196 | gap 1 GCGAAAGTGAGAAAA GCTAGGC-GCCGACCAACAC CTAC GCGGTAGCCGGGAGCCGAGC TCGGCATAACCTAGC APE_2180a 1383688 - 1383924 + | hypothetical protein APE_2182 1384703 - 1383948 - | DNA polymerase sliding clamp B1 APE_2184.1 1384821 - 1385216 + | hypothetical protein APE_2185.1 1385795 - 1385358 - | hypothetical protein TERM 509 1385447 - 1385457 + g 80 -2.4 -5.24416 | TAGACTTAGTTTTCT GGGC TAC GGCC TTTTTCTTCTCCTTC TERM 510 1385814 - 1385840 + r 72 -10.2 -3.34517 | overlap 1385812 GAGCCGCACCCTTAA GGTGGATAGGCT TCA AGCCTATTCAAC TCTTTCCACACCCGT APE_2187.1 1386677 - 1385832 - | hypothetical protein APE_2188.1 1386886 - 1389732 + | putative ATP-dependent helicase TERM 511 1390022 - 1389998 - g 73 -12.1 -3.10531 | opp_overlap 1389997 1389999, overlap 1389996 CCAAAAGTACAGAGA GGCCTTCCCCC ACA AGGGGAAGGCT GTTGTGGAGATGGAG TERM 512 1389999 - 1390021 + G 87 -14.9 -3.22475 | opp_overlap 1389998 1389996, overlap 1389997 CAAAAGTACAGAGAG GCCTTCCCC CACAA GGGGAAGGC TGTTGTGGAGATGGA APE_2190 1389894 - 1390958 + | hypothetical protein aspS 1392837 - 1391509 - | aspartyl-tRNA synthetase APE_2195 1393363 - 1392938 - | hypothetical protein APE_2196 1394093 - 1393392 - | fibrillarin TERM 513 1394129 - 1394158 + r 75 -11.3 -3.07043 | overlap 1394141 CCTGCCTCCTCTTCT CCTCCTAGGCGGG CGGC CCCTCCTGGGCGG TCTTGCCCTCCTGGG APE_2199.1 1395367 - 1394108 - | snoRNA binding protein TERM 514 1394141 - 1394183 + g 74 -6.8 -4.30809 | gap 1, overlap 1394129 1394177 TCTCCTCCTAGGCGG GCGGCCCC-TCCTGGGCGG TCTTGC CCTCCTGGGCTGGGGCGGC TTTTCCTCCCTCTTC TERM 515 1394471 - 1394492 + g 71 -10.9 -3.29511 | gap 1 TAGGACCTGGATAGT GCTCG-CAGG CAT CCTGGCGAGC TTGTCGAGGCCTCCC rps30e 1395525 - 1395677 + | 30S ribosomal protein S30e TERM 516 1397181 - 1397159 - g 70 -4.9 -4.42062 | GATGTTCCAAAGAAA TCTCGCT GGAGAGGTT AGCGAGA GGCACATACTGAGGC gatD 1395939 - 1397222 + | glutamyl-tRNA(Gln) amidotransferase subunit D TERM 517 1398584 - 1398608 + G 72 -9.9 -3.65046 | CTATCCATGGCCGAG CCTCTGGTGCC GGA GCCTCCAGAGG TTGTTGCGATGAGGC gatE 1397225 - 1399153 + | glutamyl-tRNA(Gln) amidotransferase subunit E TERM 518 1399189 - 1399202 + T 82 -9.5 -4.15044 | opp_overlap 1399189, overlap 1399197 1399198 GCTCCCCCAGACATA GGCCC TCTA GGGCC TTTCTTAAAGGCCAA APE_2206.1 1400127 - 1399273 - | hypothetical protein APE_2207.1 1401128 - 1400130 - | hypothetical protein APE_2208.1 1402920 - 1401178 - | protein kinase APE_2211.1 1403490 - 1403056 - | hypothetical protein APE_2212.1 1403677 - 1404555 + | hypothetical protein APE_2213 1404724 - 1405215 + | aldehyde dehydrogenase, small subunit APE_2216.1 1405218 - 1407575 + | aldehyde dehydrogenase, large subunit TERM 519 1407626 - 1407610 - g 83 -12.3 -3.83026 | GGTCCTCATACCAAA GAGCCTC GAT GAGGCTC TGGACATGCTGGAGA APE_2219 1407575 - 1408453 + | aldehyde dehydrogenase, middle subunit APE_2220.1 1408580 - 1409476 + | CoxD-like protein APE_2221.1 1409484 - 1410569 + | CoxE-like protein APE_2223 1411157 - 1410540 - | PucB-like protein APE_2225.1 1411329 - 1411772 + | CoxG-like protein TERM 520 1412042 - 1412082 + G 74 -11.1 -3.55444 | gap 1, opp_overlap 1412064 TGTCAGGGGGTGGCT GGGCGGGTG-GTGCAGCG AGAACG CGCTGCTCACAGTCGCCC TTTCAGCCCTGAAGG APE_2227 1411860 - 1412756 + | CoxF-like protein APE_2229.1 1415082 - 1413181 - | DNA polymerase II APE_2235 1415934 - 1415284 - | hypothetical protein TERM 521 1415910 - 1415865 - G 76 -11.7 -3.32819 | gap 1 CATAGACCTCCACAA CCCAGCCCGAGCTGGGCACCGG GCT CAGGAGCCTATC-CAGGCTGGG CACGCCGGTGACACT APE_2236 1416798 - 1416064 - | hypothetical protein APE_2238.1 1417521 - 1416931 - | hypothetical protein adh 1419441 - 1418407 - | NAD-dependent alcohol dehydrogenase APE_2240 1419723 - 1420697 + | putative amidohydrolase APE_2242.1 1420761 - 1421600 + | hypothetical protein APE_2242a 1421968 - 1421663 - | hypothetical protein APE_2242b 1422199 - 1422029 - | hypothetical protein TERM 522 1422284 - 1422295 + H 70 -7.2 -4.0896 | opp_overlap 1422275, overlap 1422281 GTAACAGCCGCTCCC GCCC CACC GGGC TTTTAGAAGGACTTT TERM 523 1422863 - 1422875 + H 76 -10.5 -3.29511 | opp_overlap 1422860 1422857 GATAGCAGATCATCG CCCCC AAG GGGGG TTGTGGGGGGCTCAA TERM 524 1423145 - 1423169 + G 73 -12.1 -3.14132 | overlap 1423139 CAGGCGTCACCCCTG GGCCTCCAGGG ATA CTCTGGAGGGC TTCCTCAGGGGGCGC TERM 525 1423527 - 1423489 - g 74 -13 -2.91582 | opp_overlap 1423522 1423525, overlap 1423492 TACTCGATCGAGACA GTATCGTGGAGCACCGGG GGA CCAGGTGCGCCTCGATGC TGGGCGGGCCTAGCA TERM 526 1423524 - 1423492 - g 74 -13.3 -2.7035 | opp_overlap 1423522, overlap 1423489 TCGATCGAGACAGTA TCGTGGAGCACCGGG GGA CCAGGTGCGCCTCGA TGCTGGGCGGGCCTA APE_2246.1 1423014 - 1423550 + | hypothetical protein APE_2247 1424121 - 1423537 - | 3-methyladenine DNA glycosylase TERM 527 1423760 - 1423719 - G 88 -14.5 -3.53091 | AGCCCCGCTCGTAAA CCGGAGCCCCGTCCACA CCCCTATC TATGGACAGGGCTCTGG CTAGCCTCCCAGGCC aspC 1425372 - 1424155 - | aspartate aminotransferase APE_2249.1 1425438 - 1425995 + | hypothetical protein APE_2252.1 1427238 - 1426330 - | ABC transporter permease APE_2253.1 1428182 - 1427238 - | ABC transporter permease APE_2254.1 1429925 - 1428198 - | ABC transporter substrate-binding protein TERM 528 1429398 - 1429432 + g 75 -12.3 -3.26649 | gap 1 GGCGTTAGCGTAGTC CGTTATGTCAAGGAGG TATC CCTCCTTGGCG-AACG TTGATATCCACCTGT APE_2256.1 1431318 - 1430398 - | hypothetical protein dppA 1431510 - 1433057 + | dipeptide ABC transporter, dipeptide-binding protein DppA dppB 1433184 - 1434203 + | dipeptide ABC transporter, permease protein DppB dppC 1434224 - 1435066 + | dipeptide ABC transporter, permease protein DppC dppD 1435086 - 1436036 + | dipeptide ABC transporter, ATP-binding protein DppD dppF 1436055 - 1437080 + | dipeptide ABC transporter, ATP-binding protein DppF APE_2265.1 1437125 - 1438003 + | hypothetical protein TERM 529 1438081 - 1438115 + F 83 -13.4 -3.05384 | opp_overlap 1438104 CTGGGTTCATCACGG TCTCCCCGGGGCTGCC TAC GGAAGCCCCTGGGGGC TTCCCTCGGGAACCC APE_2265a 1438193 - 1438303 + | hypothetical protein APE_2267.1 1438427 - 1439806 + | putative pyridoxal-dependent decarboxylase APE_2269.1 1439803 - 1440951 + | putative MFS transporter APE_2271.1 1442641 - 1440998 - | hypothetical protein TERM 530 1441304 - 1441317 + g 72 -5.3 -4.45083 | TCCACTTCCTGGTTC TTCTC CAGA GAGAA TTTTCTGGATATCAC APE_2272.1 1444749 - 1442776 - | hypothetical protein TERM 531 1444729 - 1444760 + g 70 -5 -4.45577 | overlap 1444720 AAAAGGCCTCATGAG GGGAGGGTTGTGAG AGGA CACACAATACACCC TTTTCTAGAGTTTCT APE_2273.1 1445578 - 1446762 + | thioredoxin APE_2274 1446781 - 1449780 + | putative cytochrome C-type biogenesis protein APE_2275 1449914 - 1452151 + | hypothetical protein TERM 532 1452191 - 1452211 + F 73 -3.9 -4.84359 | overlap 1452189 ATCTATATAAACTTT GAGTCAAGC CCG GCTCAACTC TTTTTCTCAGGGTGG APE_2277.1 1452336 - 1453142 + | putative hydrolase APE_2278 1453440 - 1454192 + | thioredoxin peroxidase APE_2279.1 1456183 - 1454279 - | hypothetical protein APE_2281.1 1457064 - 1456324 - | putative cytidylyltransferase APE_2283.1 1457744 - 1457124 - | hypothetical protein fadD 1457923 - 1459575 + | long-chain-fatty-acid--CoA ligase APE_2284a 1459828 - 1459592 - | hypothetical protein thrC 1461125 - 1459944 - | threonine synthase TERM 533 1461164 - 1461210 + H 75 -11.8 -2.87132 | opp_overlap 1461166, overlap 1461166 CTACAACCTCGTCAA TAGTCTCATCCCCACTAT AGCCGAGAAGG ATAGTGGGGAGGAGGCTA TATATAAGAGGAGCG APE_2288 1461402 - 1461968 + | hypothetical protein APE_2289.1 1462549 - 1463037 + | hypothetical protein APE_2290.1 1464944 - 1463025 - | acylamino-acid-releasing enzyme TERM 534 1463076 - 1463091 + g 80 -2.5 -5.18371 | gap 1 CCCTTTATCGCTTGT GC-CGG AGAGA CCGAGC TTTTCTTTTATCCAC TERM 535 1463466 - 1463484 + g 75 -8.8 -4.0162 | TGCTCTGAACCTGCT CGTCTTCG TTA CGATGACG TTTGTCATGTAACCG APE_2291 1465852 - 1465133 - | putative sugar-phosphate nucleotidyl transferase APE_2292.1 1467603 - 1466017 - | hypothetical protein TERM 536 1466433 - 1466475 + g 71 -7.8 -4.09292 | gap 2, opp_overlap 1466433, overlap 1466422 TCTCGCCTCTCAAGA GGCTCCTCTCAACTGCGCTC AGATC GGGCG-AGTTG-GAGGGGAC TTTCCTTGTTAACTT APE_2295.1 1468875 - 1467895 - | hypothetical protein TERM 537 1468936 - 1468946 + r 77 -6.8 -4.56597 | TAACCCCGCATCACC CGGT GCT ACCG TTTTTAAACCCGGAG hemA 1470181 - 1468931 - | glutamyl-tRNA reductase hemC 1471104 - 1470181 - | hydroxymethylbilane synthase hemL 1472390 - 1471101 - | glutamate-1-semialdehyde aminotransferase hemB 1473496 - 1472435 - | delta-aminolevulinic acid dehydratase TERM 538 1474602 - 1474589 - g 75 -3.7 -4.82901 | overlap 1474590 GTCTCTGGATAAAAA GCCCC AGGC GGGGT GACCTCTCAGGCTAC pheS 1473724 - 1475190 + | phenylalanyl-tRNA synthetase subunit alpha pheT 1475192 - 1476838 + | phenylalanyl-tRNA synthetase subunit beta APE_2308 1476820 - 1477671 + | hypothetical protein TERM 539 1478800 - 1478786 - g 76 -12.8 -3.15078 | overlap 1478784 GACACGCTATCAAGA GCCGGG CTG CCCGGC GAGGTTAGCAGGGAG APE_2310.1 1477802 - 1478953 + | hypothetical protein APE_2311.1 1478938 - 1479837 + | hypothetical protein APE_2311a 1480092 - 1479850 - | hypothetical protein TERM 540 1480237 - 1480218 - R 72 -10.7 -3.10715 | overlap 1480220 CTCACCAGGACCCAA GACGCCC CAGACC GGGCGTC TGAGCCCCTCGGTAG APE_2314 1480776 - 1480336 - | hypothetical protein APE_2315 1481153 - 1480782 - | hypothetical protein TERM 541 1481093 - 1481053 - G 71 -10.4 -3.61268 | gap 1 TAGTCAAGCTGGAAA GCCCC-CTCGTTGACGTCG GCGG CGAAGTCATAGAGCGGGGC GGCAGCAATGGCTGT TERM 542 1481201 - 1481186 - R 72 -11.8 -2.53263 | opp_overlap 1481184 TCTAGGGGCAATTCA CCCCCG CTCC CGGGGG CATCCTCTAAAGAGA APE_2315a 1481464 - 1481183 - | hypothetical protein trpB 1482921 - 1481572 - | tryptophan synthase subunit beta gltX 1484715 - 1482991 - | glutamyl-tRNA synthetase APE_2322.1 1484778 - 1485377 + | hypothetical protein APE_2323 1485406 - 1486074 + | hypothetical protein rpl35ae 1486374 - 1486090 - | 50S ribosomal protein L35Ae TERM 543 1486802 - 1486837 + G 74 -13.4 -2.67705 | gap 1, opp_overlap 1486802 GGGTGGAGAGCATAA TCAGGTCTGGAGTGCCC GAC GGGCGCTCTAGGC-TGA TACTCTACGTTATAA APE_2325 1486624 - 1487097 + | phospholipase A2/esterase TERM 544 1487138 - 1487127 - f 70 -3.6 -4.62471 | overlap 1487099 GTTAAGTGGTAAAAA CAGG GTTT CCCG CCTGCTGGAGGGGGA atpP 1487204 - 1487512 + | V-type ATP synthase subunit K proS 1487592 - 1489049 + | prolyl-tRNA synthetase rps26e 1489115 - 1489402 + | 30S ribosomal protein S26e TERM 545 1489394 - 1489377 - f 75 -11.3 -2.9155 | overlap 1489372 GGCCTGAAGAGCAGA GGAAGCC CAAG GGCTTCC AGCTGTGAACCCACA APE_2330 1489508 - 1489990 + | hypothetical protein TERM 546 1490253 - 1490233 - gT 75 -6.7 -4.3739 | overlap 1490235 GAGGCGGCTAGAAAA CTCGCCGAG AAG CTGGGCGTG GAGCTCATCGTCCTA APE_2333.1 1489951 - 1490592 + | hypothetical protein APE_2333a 1490917 - 1490741 - | hypothetical protein TERM 547 1490946 - 1490956 + r 81 -6.8 -4.65895 | ATACCTATCCTGGCA GCCA CTA TGGC TTTTTACCTCCCGGA TERM 548 1490962 - 1490974 + r 71 -3.3 -4.80882 | overlap 1490963 CCACTATGGCTTTTT ACCTC CCG GAGGC TTTTTACTCTCCCCT APE_2334.1 1491697 - 1490978 - | hypothetical protein APE_2335.1 1491794 - 1492291 + | hypothetical protein APE_2336.1 1493703 - 1492288 - | RNA-loop binding protein FAU-1 TERM 549 1492480 - 1492495 + g 74 -6.8 -4.35044 | overlap 1492478 1492478 CAACCCCTGGAAGCC CACCTC CGGG GGGGTG TTTATGTTTGCATAC TERM 550 1493019 - 1493005 - G 71 -12.8 -2.52623 | opp_overlap 1493009, overlap 1493004 1493002 CCCCCGGGACAATAC GGCGGG CTC CCCGCC CGGGCCTTCCCTCCA APE_2336a 1494045 - 1493770 - | hypothetical protein APE_2338 1494263 - 1495213 + | hypothetical protein TERM 551 1495246 - 1495261 + T 81 -9 -4.09685 | ATCTGGCATGAAGCC GAGGCT GTGT AGCCTC TTTTCCGGAGTCGGC APE_2340.1 1495687 - 1495304 - | hypothetical protein TERM 552 1495944 - 1495962 + r 100 -16 -3.25823 | ATGGCGGAGTCATGA CGCCTCCC GGC GGGAGGCG TTGATGTGCAGGCCG lipB 1496792 - 1495998 - | lipoate-protein ligase TERM 553 1496357 - 1496377 + g 74 -11.1 -3.61398 | ACAGGAGGGTCGCGT GGGCTAGGG TGG CTCTGGCCC TTATTGCGGCGGCGC lipB 1497598 - 1496804 - | lipoate-protein ligase lipA 1498448 - 1497567 - | lipoyl synthase APE_2347.1 1498701 - 1498423 - | hypothetical protein TERM 554 1498576 - 1498590 + gH 73 -11.4 -2.57344 | overlap 1498575 CTCAATCTCAATCTC GGCGAG GAC CTCGCC CTTCTCCACGAGATC TERM 555 1499286 - 1499321 + G 75 -11.8 -3.29461 | CCAGAAGAGTTGAGC CCTGGGGTGTCGTGGC GCCG GCTACGAGGCCCGAGG TTGTCGCCAGGGTTA pyrF 1498826 - 1499560 + | orotidine 5'-phosphate decarboxylase pyrE 1499602 - 1500162 + | orotate phosphoribosyltransferase APE_2350.1 1500388 - 1501011 + | putative hydrolase APE_2352.1 1501948 - 1500995 - | hypothetical protein APE_2354 1502076 - 1503293 + | acyl-CoA dehydrogenase APE_2356.1 1503682 - 1503290 - | hypothetical protein TERM 556 1504305 - 1504283 - g 75 -9 -3.9712 | GGACCTCATGATAAA CGGGGGCCTC TTC GAGGCAGCCG CCACCCCCGAGTGCA APE_2357.1 1503759 - 1504442 + | hypothetical protein TERM 557 1504736 - 1504707 - g 79 -13.5 -3.04461 | TATCGAGGGCGAAGA GGGAGGCCGAGGC CAGG GCCTTCGCCTCCC TCCCCCTGAGCGAGG APE_2359.1 1504439 - 1504996 + | hypothetical protein APE_2360.1 1504993 - 1505589 + | hypothetical protein APE_2361.1 1506396 - 1505557 - | putative hydrolase APE_2362.1 1507925 - 1506426 - | hypothetical protein TERM 558 1507845 - 1507829 - G 71 -7.9 -4.0492 | opp_overlap 1507829 1507841 GAAGCTCGATAGAAA CCCCGAG GTT CTCGGCG TTGATCTCGAACGCC APE_2365.1 1508430 - 1507987 - | hypothetical protein aif2g 1509641 - 1508397 - | translation initiation factor IF-2 subunit gamma rps6e 1510424 - 1509717 - | 30S ribosomal protein S6e infB 1510540 - 1512393 + | translation initiation factor IF-2 ndk 1512836 - 1512411 - | nucleoside diphosphate kinase APE_2379 1513583 - 1512918 - | hypothetical protein rpl24e 1513832 - 1513641 - | 50S ribosomal protein L24e rps28e 1513919 - 1514167 + | 30S ribosomal protein S28e APE_2380.1 1514454 - 1514215 - | hypothetical protein APE_2381.1 1515659 - 1514430 - | hypothetical protein TERM 559 1516404 - 1516371 - g 71 -7.3 -4.09963 | overlap 1516372 GGCTAAGAACAAGAA CGCGGGGCTCTCC AACCCCCG GGCGAGCCACGCA GCCCCGGTGACGCTG APE_2382.1 1515862 - 1517019 + | acetyl-CoA acetyltransferase APE_2384 1517046 - 1518230 + | acetyl-CoA acetyltransferase APE_2389 1518245 - 1518790 + | hypothetical protein APE_2390.1 1518804 - 1519268 + | hypothetical protein TERM 560 1520888 - 1520898 + GF 71 -6.8 -4.13014 | opp_overlap 1520887 CGAGGGCGAGGAGAC GCTG AGG CAGC TTTTCGGCATCTACG APE_2392.1 1519491 - 1521938 + | hypothetical protein APE_2397 1521874 - 1522977 + | putative translation factor thiDN 1524383 - 1523001 - | phosphomethylpyrimidine kinase TERM 561 1524503 - 1524485 - R 72 -6.7 -4.26076 | gap 1, overlap 1524486 GGAGGCCCAGCAAAA GCCCTCCC GCCA GGGAGG-C GAGCACCGCTGCAGC APE_2403.1 1525100 - 1524465 - | hypothetical protein TERM 562 1525075 - 1525052 - G 71 -7.4 -4.14874 | overlap 1525070 ATAATAGGGTGAAAA CAGCGGCTAT CGCT AGAACCGCTG TAACCGGGTGTAGCC APE_2406.1 1525777 - 1525097 - | hypothetical protein APE_2408.1 1526487 - 1525774 - | hypothetical protein TERM 563 1526089 - 1526103 + g 71 -10 -3.54638 | GGCGACCCTCTGCCT CTCTCC CGC GGAGAG TTTGGAGACCCTTCT APE_2409 1526993 - 1526484 - | hypothetical protein APE_2411.1 1527498 - 1526944 - | hypothetical protein APE_2413 1527910 - 1528260 + | hypothetical protein APE_2414.1 1530205 - 1528778 - | MatE efflux family protein APE_2417.1 1530289 - 1530723 + | hypothetical protein etfB 1530855 - 1531697 + | electron transfer flavoprotein beta-subunit etfA 1531704 - 1532822 + | electron transfer flavoprotein alpha-subunit APE_2421 1532843 - 1534153 + | FixC protein APE_2423 1534231 - 1535379 + | aspartate aminotransferase APE_2424 1536030 - 1535368 - | hypothetical protein APE_2425 1536119 - 1537099 + | hypothetical protein napA 1538187 - 1537096 - | Na(+)/H(+) antiporter TERM 564 1538065 - 1538053 - G 78 -9.1 -4.16943 | CTTTACACCCCAAAA CGCCA GCA TGGCG CCCATAATTATCTCA APE_2430.1 1539107 - 1538628 - | thioredoxin APE_2431.1 1539157 - 1539741 + | hypothetical protein APE_2435 1541906 - 1541139 - | hypothetical protein APE_2433.1 1539725 - 1541194 + | phospho-sugar mutase TERM 565 1541588 - 1541574 - Gf 72 -10 -3.29381 | CCAGAAGAGTATGAA GTAGGC CAG GCCTAC GATCATAATGAGATT APE_2436 1542022 - 1543149 + | putative hydrolase APE_2436a 1543479 - 1543135 - | hypothetical protein deoC 1543645 - 1544352 + | deoxyribose-phosphate aldolase APE_2438 1544370 - 1545917 + | hypothetical protein mvk 1545901 - 1546875 + | mevalonate kinase APE_2441.1 1546920 - 1548707 + | acylamino-acid-releasing enzyme TERM 566 1549565 - 1549540 - g 81 -9.1 -4.25658 | overlap 1549561 AGGCGATCAAAATAA TAGACCTTTCC CGCA AGAAAGGCCTA ACCGCAGGTAAGGAT tfb 1548801 - 1549769 + | transcription initiation factor IIB APE_2444 1550951 - 1549881 - | hypothetical protein APE_2446 1551618 - 1552715 + | hypothetical protein APE_2447 1553167 - 1552739 - | hypothetical protein APE_2448 1554445 - 1553582 - | BtpA-like protein pepA 1555927 - 1554449 - | leucine aminopeptidase TERM 567 1554649 - 1554632 - G 71 -7.7 -3.9461 | gap 1, opp_overlap 1554646 CCTCTCTAAGAATAA GGCGCCGA AGA TCG-CGCC GCCATACCTCTGGGC guaA 1556182 - 1557720 + | bifunctional GMP synthase/glutamine amidotransferase protein APE_2454.1 1558059 - 1557763 - | hypothetical protein APE_2455.1 1558912 - 1558052 - | hypothetical protein trkA 1559655 - 1558993 - | Trk system potassium uptake protein TrkA TERM 568 1559169 - 1559183 + g 82 -8.5 -4.49556 | CGTCCCGTAGCCTCT GCCCC CTTAC GGGGC TTTGTTTAGTAACCG TERM 569 1561015 - 1560990 - g 72 -9.1 -3.80279 | CCTAGAAATAGAGAA CATATTAGGCT ACTC AGCCGAATATG CAGGTCCAGAACTAC eno 1559755 - 1561053 + | enolase APE_2458a 1561136 - 1561474 + | hypothetical protein APE_2460.1 1561548 - 1561826 + | FixX protein trpS 1561896 - 1563014 + | tryptophanyl-tRNA synthetase TERM 570 1563426 - 1563463 + F 100 -18.6 -3.53444 | gap 1 GGCTCTCCGCCCCCA GGGTGCTCCAAGGCGGT GGGGG GCCGCCTTGGAG-ACCC TTTCGGAGCCCCTCC TERM 571 1563515 - 1563543 + F 79 -12.4 -3.08706 | gap 1, overlap 1563535 CTGCTTTGCTCGGAG CCCCGCCTGCGCT CTCT AGCCC-GGCGGGG TATTGCCCTCTGGTT APE_2462.1 1563741 - 1564178 + | hypothetical protein APE_2463.1 1564331 - 1564648 + | hypothetical protein APE_2464.1 1565825 - 1564662 - | hypothetical protein TERM 572 1565028 - 1565018 - G 74 -6.8 -4.32034 | TGACCACGACTAAAA CGTC TGG GACG TGATCGCTCTCTATA TERM 573 1567169 - 1567143 - g 75 -3.7 -4.83615 | overlap 1567145 1567160 CACGCGCTAGAAAAA TGGGGGAAC CTTGAAATC GTTCCCCTA AACGGCCCCTACGAC APE_2465.1 1565922 - 1567277 + | RNA (cytosine-C(5)-)-methyltransferase APE_2466 1567393 - 1568580 + | putative MFS transporter APE_2467 1568927 - 1568577 - | hypothetical protein TERM 574 1568774 - 1568784 + g 78 -8.2 -4.53163 | CGCCAAGAAGAGTGC CGCC TAG GGCG TTTTCTGGTATGTCA APE_2468.1 1569012 - 1570676 + | putative propionate CoA-transferase rps25e 1570727 - 1571038 + | 30S ribosomal protein S25e TERM 575 1571355 - 1571367 + G 71 -6.9 -4.18018 | opp_overlap 1571355 CCTGAGAATTTTAAA CCCTG TAG CGGGG TTTTCGCTCCCCCCA APE_2472.1 1571101 - 1571976 + | hypothetical protein APE_2473.1 1572672 - 1571959 - | hypothetical protein TERM 576 1572627 - 1572573 - G 75 -12.1 -3.23853 | gap 1, opp_overlap 1572579 1572580, overlap 1572571 1572580 CTCCCGCAAGCAAGA CCATACACGGCTCATCGCCTCGCCAG GATC CCGCCGCGGCGATGAGCAG-GTTTAG ATAGCGTGGTGAGTG TERM 577 1572579 - 1572622 + g 78 -11.6 -3.6608 | gap 1, opp_overlap 1572573 1572571 1572580, overlap 1572580 CAAGCAAGACCATAC ACGGCTCATCGCCTCGCCAGG ATC CC-GCCGCGGCGATGAGCAGG TTTAGATAGCGTGGT TERM 578 1572621 - 1572580 - G 89 -16.5 -3.02038 | opp_overlap 1572579 1572580, overlap 1572573 1572571 AAGCAAGACCATACA CGGCTCATCGCCTCGCCAG GATC CCGCCGCGGCGATGAGCAG GTTTAGATAGCGTGG TERM 579 1572580 - 1572621 + g 83 -15.1 -2.79327 | gap 1, opp_overlap 1572580 1572573 1572571, overlap 1572579 AAGCAAGACCATACA CGGCTCATCGCCTCGCCAGG ATC CC-GCCGCGGCGATGAGCAG GTTTAGATAGCGTGG APE_2473a 1573110 - 1572859 - | hypothetical protein APE_2474.1 1575359 - 1573146 - | cell division protein CDC48 ef1B 1575925 - 1575653 - | elongation factor 1-beta APE_2480a 1576145 - 1575939 - | hypothetical protein APE_2481.1 1577354 - 1576185 - | hypothetical protein sixA 1577445 - 1577912 + | phosphohistidine phosphatase SixA APE_2485.1 1577921 - 1578475 + | hypothetical protein APE_2486.1 1578513 - 1579274 + | tRNA (m1A) methyltransferase APE_2489.1 1579358 - 1579804 + | hypothetical protein APE_2490.1 1579914 - 1580744 + | FTR1 family protein APE_2491.1 1581694 - 1580861 - | hypothetical protein APE_2493.1 1583481 - 1581850 - | hypothetical protein APE_2495.1 1584057 - 1583608 - | HIT family protein trxA 1584179 - 1584610 + | thioredoxin snatA 1584634 - 1585233 + | small neutral amino acid transporter APE_2499.1 1585302 - 1585706 + | hypothetical protein TERM 580 1588411 - 1588444 + G 71 -7.6 -4.08064 | gap 3, overlap 1588409 CACTTCTAGTGGTCG CTGGCCTGGCGGGCGTA TAC TACGC-CGCCA--CCAG TTTTGAAGGGAGCTT APE_2500.1 1585809 - 1589351 + | hypothetical protein TERM 581 1589664 - 1589648 - g 83 -12.3 -3.80279 | overlap 1589643 1589650 TCCACAAACACAGAA GAGGTCC TGA GGACCTC AGGGCCTGCAGAAGC TERM 582 1589670 - 1589650 - g 73 -11.1 -3.47615 | overlap 1589643 1589648 CACAAACACAGAAGA GGTCCTGAG GAC CTCAGGGCC TGCAGAAGCGTCGAA APE_2502.1 1589338 - 1590303 + | hypothetical protein fabG 1590404 - 1591156 + | 3-oxoacyl-[acyl-carrier-protein] reductase APE_2505 1591678 - 1591217 - | ArsR family transcriptional regulator APE_2507.1 1591842 - 1592843 + | putative glyoxylate reductase TERM 583 1593139 - 1593161 + G 76 -12.7 -3.02043 | opp_overlap 1593132 GCTAAGGACAGGGTG CCCCTGCTG CTGGT CAGCGGGGG TGTTAGGAGGAGGTT APE_2509 1592860 - 1594530 + | putative acetolactate synthase APE_2512 1595363 - 1594557 - | ABC transporter, permease protein APE_2514 1596216 - 1595389 - | ABC transporter, permease protein APE_2516 1597184 - 1596213 - | ABC transporter, ATP binding protein APE_2517.1 1597746 - 1597339 - | HxlR family transcriptional regulator TERM 584 1598339 - 1598325 - g 72 -5.6 -4.42653 | AGGCTAGTGACAAAA CCTCTG GAT CCGAGG GCGCTGACTATGGGA APE_2519.1 1597929 - 1598675 + | glyoxalase family protein maiA 1599845 - 1599132 - | maleate cis-trans isomerase livK 1599950 - 1601233 + | branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein precursor TERM 585 1601445 - 1601457 + G 70 -4.8 -4.51097 | TGGAGATCATTAACT TCGC GCATG GCGA TTTTATGATGCTTGG livH 1601330 - 1602199 + | branched-chain amino acid ABC transporter, permease protein livM 1602265 - 1603194 + | branched-chain amino acid ABC transporter, permease protein livG 1603191 - 1603910 + | branched-chain amino acid ABC transporter, ATP binding protein livF 1603910 - 1604632 + | branched-chain amino acid ABC transporter, ATP binding protein hyuA 1604644 - 1606692 + | hydantoin utilization protein A TERM 586 1607666 - 1607651 - g 71 -8.2 -4.0371 | GATCGTCGAGATAAA GGCGCC CGAG GGCACC CTAGTCAACCCTCTG hyuB 1606695 - 1608353 + | hydantoin utilization protein B TERM 587 1608405 - 1608392 - T 81 -9.5 -4.11216 | opp_overlap 1608392 CTGGCACTGCTAAAA CCCGG ATAT CCGGG TTTAGTCTCGACAAT TERM 588 1608392 - 1608405 + T 76 -9.5 -3.83205 | opp_overlap 1608392 CTGGCACTGCTAAAA CCCGG ATAT CCGGG TTTAGTCTCGACAAT APE_2533.1 1611141 - 1609075 - | hypothetical protein APE_2535.1 1611784 - 1611212 - | hypothetical protein TERM 589 1612090 - 1612067 - g 86 -6.6 -5.0133 | overlap 1612054 1612069 TATGCTGTGAAAAAA CACAGGAAGC CGGT GCTGCCTGGG GGGGTTGACCTATTA TERM 590 1612088 - 1612069 - g 74 -7.8 -4.13561 | overlap 1612054 1612067 TGCTGTGAAAAAACA CAGGAAGC CGGT GCTGCCTG GGGGGGTTGACCTAT APE_2537.1 1611863 - 1612831 + | hypothetical protein APE_2538 1614940 - 1613261 - | Na(+)/H(+) antiporter APE_2540.1 1615416 - 1615871 + | putative ala-tRNApro hydrolase ProX APE_2541 1615901 - 1616233 + | hypothetical protein APE_2542.1 1618041 - 1616239 - | TRAP transporter, membrane-spanning component APE_2545.1 1619182 - 1618073 - | TRAP transporter, solute-binding component trpC 1620145 - 1619360 - | indole-3-glycerol phosphate synthase trpF 1620789 - 1620142 - | N-(5'-phosphoribosyl) anthranilate isomerase trpB 1622066 - 1620783 - | tryptophan synthase subunit beta trpA 1622830 - 1622072 - | tryptophan synthase subunit alpha TERM 591 1622607 - 1622625 + g 86 -8.8 -4.60041 | overlap 1622608 GCCTCTTGAGAAGCC TCCTCGGC TAG GCTGAGGG TTTTTGGCCCTGAGT TERM 592 1623520 - 1623506 - g 71 -7.8 -4.05446 | opp_overlap 1623505 GCCTGTAAGGAGAAA GCTCGC TAC GCGAAC GATATTTAACCTAGT trpD 1622982 - 1624019 + | anthranilate phosphoribosyltransferase trpE 1624023 - 1625339 + | anthranilate synthase component I trpG 1625332 - 1625922 + | anthranilate synthase component II APE_2556.1 1629112 - 1626092 - | arsenite oxidase large subunit APE_2563 1629744 - 1629112 - | arsenite oxidase small subunit precursor APE_2565.1 1630719 - 1630099 - | AsnC/Lrp family transcriptional regulator APE_2567 1631426 - 1630773 - | hypothetical protein APE_2568.1 1632005 - 1631433 - | hypothetical protein nikR 1632808 - 1632422 - | nickel responsive regulator APE_2571.1 1633001 - 1634758 + | cation-transporting P-type ATPase APE_2574 1636161 - 1634989 - | hypothetical protein aspC 1637468 - 1636275 - | aspartate aminotransferase TERM 593 1637117 - 1637105 - G 72 -4.7 -4.64676 | GCATGTCGAATAAAA CCCTG TCC CCGGG GGCTACTAGGGATAT APE_2577.1 1637549 - 1638424 + | hypothetical protein APE_2578 1639284 - 1638433 - | ABC transporter, permease protein APE_2579.1 1640278 - 1639286 - | ABC transporter, ATP binding protein APE_2580 1640463 - 1641254 + | putative flavoredoxin APE_2581 1641439 - 1642656 + | hypothetical protein APE_2583.1 1643947 - 1642673 - | proton glutamate symport protein TERM 594 1643012 - 1643030 + g 81 -8.8 -4.30719 | TGCTACCGCCTGGTA CATGGCCG TGC CGTCCATG TTTATTGTGGCGCCG TERM 595 1643622 - 1643643 + g 75 -10.1 -3.65812 | GCCTCCCCAGCCAGC TCCAGCCCG CGGC CAGGCTGGA TTATGTTGGCCACAA TERM 596 1645006 - 1644990 - g 70 -12.3 -2.70932 | opp_overlap 1644990 1644989 1644987 TCCTCTTGGCAAGTA TCTCGCC CTC GGCGAGA CTCTTTCACACCTAA APE_2585 1644100 - 1645146 + | hypothetical protein APE_2586.1 1646201 - 1645287 - | ABC transporter, permease protein APE_2587.1 1647288 - 1646209 - | ABC transporter, permease protein APE_2588 1648777 - 1647281 - | ABC transporter, ATP binding protein TERM 597 1647658 - 1647675 + g 74 -7.7 -4.10925 | overlap 1647659 GGTCCTCTAGCCTGC TCCTCCT CAAG AGGAGGG TTTTGGAGGCTGTGT TERM 598 1648919 - 1648896 - R 71 -3.1 -4.82901 | gap 1 CGGTTGCGATAAAAA GAGTGTGAGC GGCTG GC-CGCACTC GGCCTAAGACTCAAG APE_2592.1 1650266 - 1648923 - | membrane lipoprotein family protein APE_2592a 1650660 - 1650463 - | hypothetical protein APE_2595.1 1651586 - 1650717 - | thiosulfate sulfurtransferase TERM 599 1651685 - 1651658 - R 93 -8.4 -4.77757 | opp_overlap 1651666 TTGGAAAAATCAAAA CTCTCCCGGCCA CTTT TGAGCAGGAGAG GCTGCTTAAAGTAGC TERM 600 1651725 - 1651714 - R 70 -3.6 -4.64861 | opp_overlap 1651720 1651722, overlap 1651699 GCTGCTTAAAATAAA CCGC ACTT GCAG AATAACTGCTATGTT APE_2598 1653632 - 1651800 - | hypothetical protein TERM 601 1651933 - 1651943 + g 76 -6.8 -4.56093 | TCGTACTTCTCGCCC GGGT TGA ACCC TTTTATCCTTAGGTT APE_2598a 1654082 - 1653840 - | hypothetical protein APE_2601.1 1654196 - 1655008 + | NG,NG-dimethylarginine dimethylaminohydrolase APE_2602 1655992 - 1655438 - | hypothetical protein acsA 1657629 - 1656088 - | acetyl-coenzyme A synthetase acsA 1658052 - 1657630 - | acetyl-coenzyme A synthetase APE_2605.1 1658356 - 1659057 + | molybdopterin oxidoreductase, iron-sulfur binding subunit APE_2607 1659074 - 1660288 + | molybdopterin oxidoreductase, membrane subunit TERM 602 1663582 - 1663561 - g 91 -13.1 -3.96068 | CGAGCTCAAGAAGAA GGTGCTCTT CACA AAGAGCACC CCAGCATACTATAAC APE_2610 1660295 - 1663792 + | molybdopterin oxidoreductase, molybdopterin binding subunit TERM 603 1663793 - 1663770 - f 73 -9 -3.6581 | gap 1, overlap 1663768 ACGAGTTCGAAAAGA CCTATCCATAC ATA GTATGG-TAGG GAGGATCATAGCCTT APE_2612.1 1663807 - 1664391 + | hypothetical protein APE_2615.1 1665538 - 1664408 - | hypothetical protein APE_2616 1666418 - 1665993 - | hypothetical protein APE_2616a 1666640 - 1666446 - | hypothetical protein APE_2617.1 1667311 - 1666868 - | hypothetical protein APE_2617a 1667546 - 1667286 - | hypothetical protein TERM 604 1667680 - 1667710 + r 70 -10.5 -2.73459 | opp_overlap 1667680, overlap 1667667 1667679 1667677 GCCGCTCTTGAAGAA CGTTTCCAGTTGA TGGTT TCCGCTGGAAACG CTGTTTATAAGTCTC APE_2617b 1668156 - 1667914 - | hypothetical protein APE_2617c 1668539 - 1668321 - | hypothetical protein APE_2617d 1669138 - 1668839 - | hypothetical protein APE_2617e.1 1669421 - 1669179 - | hypothetical protein