TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.413921 %AT, 5254971 nt, 55726 terms. Intergenic: 0.481313 %AT, H2T: 669698 nt, 6694 terms; T2T: 183307 nt, 4091 terms; H2H: 276554 nt, 5102 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|222102412|ref|NC_011981.1| Agrobacterium vitis S4 plasmid pAtS4e, complete sequence (length 631775) repA 70 - 1296 + | replication protein A TERM 1 1296 - 1276 - f 79 -3.9 -5.14563 | overlap 1277 TCTCTTATCAAAAAA GCATGGGGT AGA ACCACATGA GCCGGAAGCACATCC repB 1293 - 2306 + | replication protein B TERM 2 2361 - 2330 - f 100 -10.8 -5.13722 | opp_overlap 2330 GTCAGCAAAAGAAAA GAGCTCCCCCAACG TCGC CGTCGTGGAAGCCC TTCTGTCTCTCTAGC TERM 3 2507 - 2489 - g 71 -11.6 -3.28765 | AGACTGGAAATGTAA CGACGCCC TTC GGGCGGCG GGGTATGACGCTTGC TERM 4 3220 - 3204 - g 89 -2.1 -5.66684 | overlap 3206 3207 3208 TAATTCAGAAAAAAA TAGCGCC AAT GCCGCTC AAATTGAGCGGCACA TERM 5 3218 - 3206 - g 70 -4.7 -4.46105 | overlap 3204 3207 3208 ATTCAGAAAAAAATA GCGCC AAT GCCGC TCAAATTGAGCGGCA repC 2470 - 3684 + | replication protein C Avi_7004 5256 - 4003 - | Flavin-containing monooxygenase TERM 6 4160 - 4135 - G 70 -11.9 -2.79842 | opp_overlap 4133, overlap 4132 4137 4151 AAGACCGAGGAAGTA GAGGCCTCTCT CAGA AGAGACGCCTC GATGATGTCTAGGGC TERM 7 4977 - 4987 + g 78 -3.2 -5.09895 | overlap 4970 TTCCACTGCGTATTG GTGC GTT GTAC TTTTTTGCATAGGTC Avi_7005 5807 - 7513 + | GGDEF family protein Avi_7008 9118 - 7955 - | phage integrase family protein TERM 8 8917 - 8955 + g 100 -15.2 -3.82031 | opp_overlap 8898 8917 8916 CCGCCTCCACATAAT CGCGGGCGCGGCTCGCCA GGC TGGTGAGATGCGTCGGCG TTTGGTCCTCGTTGA Avi_7013 11645 - 11193 - | transcriptional regulator mdh 12985 - 11936 - | malate dehydrogenase Avi_7015 13283 - 14869 + | ABC transporter substrate binding protein (oligopeptide) TERM 9 15288 - 15267 - g 77 -12.3 -3.53811 | gap 1 GCGACGTCCTTGAAA TCCGGCGCGG CGA CCGCGC-GGA AATGTACAATCTGTT hyuA 14987 - 17008 + | hydantoin utilization protein hyuB 17011 - 18726 + | hydantoin utilization protein TERM 10 18734 - 18764 + G 75 -9 -4.07687 | overlap 18737 18762 CATTCTGAATCTCAT GAGCCGGAAGGGAT ACG ATTTCTCCCGGTTC TTTTCGCAAAGGAAT TERM 11 18737 - 18761 + G 71 -7.1 -4.17048 | overlap 18734 TCTGAATCTCATGAG CCGGAAGGGAT ACG ATTTCTCCCGG TTCTTTTCGCAAAGG TERM 12 19066 - 19081 + G 72 -4.6 -4.57073 | overlap 19067 19068 19077 TGCTTGGCGGGGGGC TTGGCC TGGT GGCCGG TTTTTCAGGCGGCTG dppC 18723 - 19625 + | ABC transporter membrane spanning protein (dipeptide) TERM 13 19920 - 19934 + G 72 -9.2 -3.65828 | AACGCCTGCCAGCTA GCGCGG AAC TCGCGC TTTACGCCTTTCTCT dppB 19628 - 20629 + | ABC transporter membrane spanning protein (dipeptide) TERM 14 20883 - 20873 - g 71 -8.2 -4.08216 | opp_overlap 20880, overlap 20880 CCATGCTGTTTAAAA GCCG AAA CGGC GAGGTCGATCTTGTG Avi_7020 20632 - 21648 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7021 21645 - 22625 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 15 22753 - 22779 + G 77 -12.3 -3.53811 | ATGTGATTGTCGGTG GCGTCTCACCC CCACC GGGTGACACGC TTTGGGAGCAGTCGC Avi_7022 22680 - 23708 + | hypothetical protein Avi_7026 25697 - 24717 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7027 26662 - 25694 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7028 27590 - 26664 - | ABC transporter membrane spanning protein (oligopeptide) TERM 16 26755 - 26745 - G 86 -4.6 -5.2204 | GATAATGAAGAAAAA CAGC GGT GCCG CCAGTTGCCACAAGG Avi_7029 28518 - 27595 - | ABC transporter membrane spanning protein (oligopeptide) TERM 17 28563 - 28539 - R 87 -14.3 -3.01791 | opp_overlap 28531 28540 ATCGCCCCGGTAAGA GGGGCAGCACA TGG TGTGCTGCCCT TTACAGCATTATTTG TERM 18 28540 - 28562 + r 100 -17.8 -3.59649 | opp_overlap 28539, overlap 28531 TCGCCCCGGTAAGAG GGGCAGCACA TGG TGTGCTGCCC TTTACAGCATTATTT Avi_7030 30185 - 28572 - | ABC transporter substrate binding protein (oligopeptide) TERM 19 29854 - 29842 - G 76 -3.3 -4.90525 | overlap 29843 CAAGCGTAAACAAAA TCGCC TGC GGTGA CGGGCGTGCCATCGG TERM 20 30459 - 30474 + H 85 -3.2 -5.37593 | opp_overlap 30459 AGGCGTTCATATAAT CCGAAT GATT ATCCGG TTTTTTCCTTTGCGC TERM 21 31010 - 31023 + G 70 -2.3 -4.81551 | TCTTGGCTCAACCTG GTCGC ATGA GCAAC TTTTTGATCTGGGTA Avi_7032 30546 - 31193 + | transcriptional regulator TetR family Avi_7033 31376 - 31669 + | hypothetical protein TERM 22 31786 - 31825 + T 74 -7.9 -4.13767 | gap 2, overlap 31787 31792 TCGAAGCTGTCCGGG TTGGAAGGGCGCTC--CCC AAGA GGGTCGAGCGCCCTTTCGC TTTTAAACTGCCCAG TERM 23 31787 - 31824 + T 75 -11.4 -3.08046 | gap 2, overlap 31786 31792 CGAAGCTGTCCGGGT TGGAAGGGCGCTC--CCC AAGA GGGTCGAGCGCCCTTTCG CTTTTAAACTGCCCA TERM 24 31792 - 31819 + T 81 -9.9 -3.93061 | gap 2, overlap 31787 31786 CTGTCCGGGTTGGAA GGGCGCTC--CCC AAGA GGGTCGAGCGCCC TTTCGCTTTTAAACT Avi_7034 33282 - 31828 - | hypothetical cytosolic protein TERM 25 32202 - 32220 + g 79 -5.2 -4.8622 | overlap 32204 CACAAAGACCGAATG CGCGCATT GTC GATGCGAG TTTTTCATTGCGCGA TERM 26 32853 - 32869 + g 89 -3.7 -5.54907 | ATCTCTCGTGTTCGG GAAAATC GGA GAGTTTC TTTTTGTTTTCTCCA TERM 27 34184 - 34196 + G 72 -9.1 -3.87373 | TCCGAGCCGGCAGAT CCGCA AGC TGCGG TTTCTGGCCAATATC parB 33780 - 35495 + | chromosome partitioning protein TERM 28 35521 - 35544 + F 100 -17.4 -5.27335 | opp_overlap 35521 AAGGATCTGAACCAA CGCCGCTGGC TGAT GCCGGCGGCG TTTTTGTTTCCAGCA TERM 29 35544 - 35521 - f 100 -15.2 -3.36557 | opp_overlap 35521 AAGGATCTGAACCAA CGCCGCTGGC TGAT GCCGGCGGCG TTTTTGTTTCCAGCA TERM 30 35841 - 35863 + G 77 -12 -3.57387 | overlap 35844 TATGAGGAGGATTGT GAATGGGCGA AGG TCGCCCATGC TTTCCCGCATCTATT TERM 31 35844 - 35860 + G 71 -12.3 -2.91322 | overlap 35841 GAGGAGGATTGTGAA TGGGCGA AGG TCGCCCA TGCTTTCCCGCATCT Avi_7036 35577 - 36239 + | hypothetical protein TERM 32 36783 - 36734 - g 78 -14.1 -2.52464 | opp_overlap 36691 CCTCGTCGCAAGGCA GGTCCGCGTCTGTCGCAGCCCGC AAGT GCGGGCAGCACCATCCGCAAACC ATCCTCGCTCCTCCT TERM 33 37488 - 37476 - g 85 -10.5 -4.26903 | overlap 37465 CTCAGTCGACCAAAA GGCCG CAA CGGCC CAGATGGCAGCATTC Avi_7038 36664 - 37509 + | hypothetical protein Avi_7039 38432 - 37605 - | short-chain dehydrogenase protein Avi_7040 38508 - 39440 + | transcriptional regulator AraC family Avi_7041 39943 - 39527 - | hypothetical protein hupT 40491 - 40213 - | HNS-type DNA binding protein Avi_7043 40592 - 41044 + | transposase Avi_7044 41041 - 41394 + | transposase TERM 34 42563 - 42542 - g 77 -2.1 -5.03314 | overlap 42543 CCGATCTCGAAAAAA GTGCGCGCG ACAG CAAGCGCAA TGGCAGGCCGATCTC Avi_7045 41440 - 43098 + | transposase Avi_7046 43312 - 43079 - | transposase Avi_7047 43663 - 43451 - | hypothetical protein Avi_7050 44465 - 43932 - | hypothetical protein Avi_7051 45033 - 44560 - | hypothetical protein Avi_7052 46090 - 45038 - | hypothetical protein Avi_7053 47153 - 46095 - | hypothetical protein TERM 35 46209 - 46187 - G 81 -14.9 -2.65264 | CCATGACCCATAGCA CGCCGTCGA TCGCC TCGACGGCG GAGACATCGTCGATG TERM 36 46516 - 46534 + g 83 -4.5 -5.07652 | TCGGTGATTTTCTCT CCGTCAA ACCAG TAGACGG TTTTCTTTTCCCCGG Avi_7054 48556 - 47162 - | hypothetical protein TERM 37 48409 - 48435 + g 74 -13.6 -2.50443 | overlap 48408 GCCCAGTCATATGCA CTGTCGCGGCCG TGC CGGCTGCGTCGG ATTGGTAGGCTATAA Avi_7055 49623 - 48553 - | hypothetical protein vgrG 51859 - 49634 - | vgrG protein Avi_7057 52570 - 52241 - | hypothetical protein Avi_7058 52872 - 52567 - | hypothetical protein traG 55315 - 53348 - | Ti-type conjugative transfer system protein TraG traD 55547 - 55302 - | conjugal transfer protein Dtr system traC 55818 - 55522 - | conjugal transfer protein Dtr system TERM 38 55914 - 55888 - H 77 -6.7 -4.58395 | gap 1, opp_overlap 55907 55909, overlap 55893 CGGATGCTCGAAAAA TGG-AATCTGCA GATC TGCAGATCGCCA AGGGCGATGCTTTCG TERM 39 58373 - 58352 - g 93 -13.7 -3.9444 | GAAACGCCAAGGAAA CCACGCTCG ATTA CGAGCGCGG AAACCTCTACCGCGA traA 56074 - 59376 + | Ti-type conjugative transfer relaxase TraA traF 59394 - 59903 + | conjugative transfer signal peptidase TraF TERM 40 60859 - 60834 - g 88 -13.3 -3.73224 | opp_overlap 60853 TGACCTTTTACGAAA TCCGACCGTCG ATAT CGACGGCCAGA AGATCGCGCCTTTGA traB 59974 - 61059 + | conjugal transfer protein Dtr system traH 61071 - 61721 + | conjugal transfer protein Dtr system Avi_7070 62486 - 63337 + | transcriptional regulator AraC family TERM 41 64068 - 64105 + G 70 -4.9 -4.55798 | gap 1 TCGTGATCGCTCAAT TTGGTG-TCGGCAGCA TTGCGGT TGATGCCGATCCCCAA TTTTGGTTTGCAGTC Avi_7072 63440 - 64354 + | hypothetical protein TERM 42 64583 - 64613 + F 100 -16.4 -3.28001 | opp_overlap 64589, overlap 64578 64589 GCTTCCTCCGCCTTA TACGAAGAGTCATT GAA AGTGACTCTTCGTA TTCCCTTTGAAAATA TERM 43 64620 - 64662 + F 72 -7.4 -3.89346 | CTCTTCGTATTCCCT TTGAAAATATCTCAAG CCTCTGATGCA TTTGAGATATTTTCAA TTTCTCAAGTCGAGG Avi_7073 64988 - 65404 + | transcriptional regulator Avi_7074 66239 - 65523 - | transposase TERM 44 66018 - 66037 + g 75 -9.2 -3.90112 | TTTGTCGCCAAGCTT TCCGGCTG AACG CCGCCGGA TTTCATTGGCAAAGC Avi_7075 67679 - 66567 - | major facilitator family transporter Avi_7076 68790 - 67729 - | zinc-binding dehydrogenase TERM 45 69203 - 69232 + r 76 -10.7 -3.37612 | opp_overlap 69194 69208, overlap 69205 69206 69208 AGACAACTCGGGCTG AACGAGGCGTGGA CGAA TCCACGCCTCATG TTGCTTAGGCTTCGA TERM 46 69205 - 69230 + r 85 -13.3 -3.25539 | opp_overlap 69194 69208, overlap 69203 69206 69208 ACAACTCGGGCTGAA CGAGGCGTGGA CGAA TCCACGCCTCA TGTTGCTTAGGCTTC TERM 47 69206 - 69229 + r 100 -16.8 -2.54841 | opp_overlap 69194 69208, overlap 69205 69203 69208 CAACTCGGGCTGAAC GAGGCGTGGA CGAA TCCACGCCTC ATGTTGCTTAGGCTT TERM 48 69208 - 69227 + r 85 -13.6 -2.80699 | opp_overlap 69208, overlap 69206 69205 69203 ACTCGGGCTGAACGA GGCGTGGA CGAA TCCACGCC TCATGTTGCTTAGGC TERM 49 69227 - 69208 - R 85 -13.6 -2.71011 | opp_overlap 69208 69206 69205 69203 ACTCGGGCTGAACGA GGCGTGGA CGAA TCCACGCC TCATGTTGCTTAGGC menG 69911 - 69237 - | demethylmenaquinone methyltransferase TERM 50 69799 - 69777 - G 71 -10.4 -3.48276 | opp_overlap 69776 CGGGCCCGTATAGAA CGGGCGCAGC GGC GCGCCGCCCG CTGTCATACGGGACA serA 70892 - 69942 - | D-3-phosphoglycerate dehydrogenase TERM 51 70932 - 70950 + H 72 -8.8 -3.82864 | CGCCGTTGATAGGTT TGCAGCAG CTT CCGCTGCA TTGATTTTGTTCACT TERM 52 71073 - 71051 - H 100 -13.6 -4.371 | opp_overlap 71051 TGTACTAGATGAAAA GATGTTGTAC CTA GTACAACATC TTTTTGAGGGAGGTT TERM 53 71051 - 71073 + H 100 -13.6 -4.57341 | opp_overlap 71051 TGTACTAGATGAAAA GATGTTGTAC CTA GTACAACATC TTTTTGAGGGAGGTT Avi_7080 71096 - 71791 + | Transcriptional regulator Avi_7081 71843 - 72802 + | hypothetical protein TERM 54 73087 - 73101 + G 77 -10 -3.91897 | GGATTTGCGTTTGCA GCCGAA CGC TTCGGC TTTGTCGCTGCAACC Avi_7082 72799 - 73260 + | hypothetical protein TERM 55 73624 - 73600 - g 78 -11.3 -3.7795 | opp_overlap 73592 CCAAATGGCACGAAA GGGCAGGGCGG GTG CCGCCTTGGCC ATTGCAGCGCTTGGC Avi_7083 73292 - 74800 + | hypothetical protein TERM 56 74808 - 74825 + F 100 -10.5 -4.74453 | opp_overlap 74808 AAGACTGACATAAAA GGGCGCC GAGA GGTGCCC TTTTTCACTGTCTTC TERM 57 74825 - 74808 - f 85 -8.3 -4.56961 | opp_overlap 74808 AAGACTGACATAAAA GGGCGCC GAGA GGTGCCC TTTTTCACTGTCTTC TERM 58 74918 - 74939 + G 73 -12.3 -3.13565 | overlap 74908 74914 CTTTTTGCTTCGGCG GGGCATCGC TTGC GCGATGTCC TATCTCTTGATGATT Avi_7084 74891 - 76069 + | dehydrogenase Avi_7085 76820 - 76152 - | transposase ameR 77577 - 76852 - | transcriptional regulator TetR family TERM 59 77798 - 77788 - g 72 -5.4 -4.52781 | overlap 77790 77797 GAACGACAATGAAAA GCTT AAC AAGC GCGGACCGGCTGTCG Avi_7087 77781 - 79088 + | ABC transporter substrate-binding protein rbsA 79081 - 79842 + | ABC transporter nucleotide binding/ATPase protein (ribose) Avi_7089 79820 - 80524 + | ABC transporter nucleotide binding/ATPase protein Avi_7090 80521 - 81390 + | ABC transporter membrane spanning protein (urea/amide) Avi_7091 81387 - 82346 + | ABC transporter nucleotide binding/ATPase protein TERM 60 82573 - 82554 - g 100 -13.6 -4.7373 | opp_overlap 82542 GCATTGCAGGAAAAA GCCTGCCA ATTT TGGCAGGC CTGCCGATGACCATC Avi_7092 82343 - 83800 + | amidase Avi_7093 83891 - 84262 + | transposase TERM 61 84602 - 84634 + G 78 -11.3 -3.6608 | opp_overlap 84600 AAGACCCATTGAACT TTCTCGCCGCTGTCA AAT TGGCAGCAGCAAGAA TTTGGATCAGATCGT Avi_7095 84346 - 84654 + | transposase Avi_7096 84694 - 85212 + | hypothetical protein rhtB 86114 - 85515 - | RhtB family transporter TERM 62 85888 - 85876 - G 75 -5.5 -4.67968 | GCAAGAAATAACAAA TAGGC TGC GCCCA AATATTTCACGACGG Avi_7100 86688 - 86119 - | hypothetical protein TERM 63 86309 - 86319 + g 83 -4.6 -5.03314 | ACGAGGATTGTGACC GGTG GTT CGCC TTTTTTGCCCGTGGC Avi_7103 88314 - 87943 - | Transposase and inactivated derivatives IS5 family Avi_7104 88640 - 88356 - | hypothetical protein Avi_7106 88930 - 90174 + | phosphoenolpyruvate synthase-related protein TERM 64 90353 - 90326 - g 75 -12 -3.28791 | opp_overlap 90314 90313 90323 90316 ATGGGTGCGGCACAA CGCAGCACCG TTGTTTTC CGGCGCTGCG CGGTCGGCATTTATT Avi_7108 90249 - 91325 + | hypothetical protein Avi_7109 91322 - 91936 + | hypothetical protein Avi_7110 91936 - 92706 + | transferase rhtB 92703 - 93350 + | RhtB family transporter Avi_7112 93419 - 94009 + | hypothetical protein TERM 65 94315 - 94303 - T 72 -6.9 -4.16016 | opp_overlap 94303 94304 94313, overlap 94304 CCATTTGGTAACAAA CGCCC GTA GGGCA TTTTCCGATGCATTG Avi_7114 95137 - 94454 - | transposase Avi_7117 95781 - 95236 - | transposase Avi_7120 96180 - 95854 - | transposase Avi_7121 97313 - 96351 - | transcriptional regulator LysR family TERM 66 97399 - 97386 - R 70 -3.9 -4.66833 | opp_overlap 97386 CGGCAAGTCTAAAAA TTGAT CAAA ATCAA TATTGTTCAAAATAT Avi_7122 98709 - 97429 - | MFS permease TERM 67 97561 - 97541 - G 76 -7.5 -4.5115 | TAGAAAAACGCAAAA GCCGTACCG ATG CAGCACAGC ACACCATTGGTGGAT Avi_7123 99611 - 98742 - | D-N-carbamoylase TERM 68 99480 - 99469 - G 71 -7.2 -4.25256 | GTGGCAGCAAAATAA GGCG TGAG CGCC AGTTCCGGCAACACC TERM 69 99727 - 99691 - R 91 -9.5 -4.65182 | opp_overlap 99689, overlap 99723 CATAAACGAAAGAAA GAGCATTTCCGCGTTTC CGT GAAAAGTTGAAATGCTC ACTGTTGAACATGGA Avi_7125 100434 - 99745 - | hydrolase TERM 70 100570 - 100585 + H 71 -3.2 -4.84359 | TGTTTTTAGGGTCAT CTCTTG CGGG CATGAG TTTTTCTCAAGGTGC TERM 71 101595 - 101573 - g 75 -4.1 -4.8048 | gap 1, opp_overlap 101591 GCGCCAGATCAAAAA TCCGCA-GCC AACC GGCATGCTGA AGCTGATCGGCTCCT Avi_7126 100680 - 101783 + | hypothetical protein TERM 72 101839 - 101794 - T 75 -11.3 -3.08813 | gap 1, opp_overlap 101797 101798, overlap 101828 CGTGAGGTGAACAGA TGCTTAGGTTCTGTCAGGTTCA GGT TGAACCAGACAGAACCTA-GTT TTGTGTTTTCGTGTG TERM 73 101797 - 101837 + T 100 -20.7 -4.91977 | opp_overlap 101794 101828, overlap 101798 GAGGTGAACAGATGC TTAGGTTCTGTCAGGTTCA GGT TGAACCAGACAGAACCTAG TTTTGTGTTTTCGTG TERM 74 101798 - 101836 + T 100 -22 -3.53559 | opp_overlap 101794 101828, overlap 101797 AGGTGAACAGATGCT TAGGTTCTGTCAGGTTCA GGT TGAACCAGACAGAACCTA GTTTTGTGTTTTCGT TERM 75 101966 - 101993 + T 72 -10 -3.32844 | opp_overlap 101963 101962, overlap 101967 CTGCTGCATAATTTT CTCTTTAAACCG ATTC CGGTTTAAAGAA TTATGCAGTAAGCGC TERM 76 101967 - 101992 + T 81 -13.5 -2.59564 | opp_overlap 101963 101962, overlap 101966 TGCTGCATAATTTTC TCTTTAAACCG ATTC CGGTTTAAAGA ATTATGCAGTAAGCG TERM 77 102034 - 102005 - T 89 -13.6 -3.20703 | opp_overlap 102001 102005 AGAATTATGCAGTAA GCGCCGTGCC TTGCTTATGC GGCACGGCGC TTTTTTGTGGAAGAC TERM 78 102005 - 102034 + T 100 -13.6 -5.24129 | opp_overlap 102005, overlap 102001 AGAATTATGCAGTAA GCGCCGTGCC TTGCTTATGC GGCACGGCGC TTTTTTGTGGAAGAC Avi_7127 103362 - 102052 - | hypothetical protein TERM 79 103745 - 103728 - g 77 -2 -5.06414 | gap 1 CTGCGTCAACAAAAA TGCCTCA GCGCA TG-GGCA TATCGAGCGCTCCGG Avi_7128 103570 - 104073 + | flavoprotein oxidoreductase Avi_7129 104155 - 105462 + | ABC transporter substrate binding protein (spermidine/putrescine) Avi_7130 105491 - 106360 + | ABC transporter membrane spanning protein (spermidine/putrescine) Avi_7131 106364 - 107209 + | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 80 107796 - 107824 + G 75 -3.8 -4.74706 | CAAAGGTTTTGCTGC TGGATGAGCCGC TATCC GCGCTTGATCCA TTTTTACGTATTACC Avi_7132 107237 - 108310 + | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) Avi_7134 109317 - 108406 - | Integrase catalytic core TERM 81 109211 - 109225 + g 88 -10 -4.47328 | opp_overlap 109211 GTCTGCGCGGGAAAA CAGTCC ACT GGACTG TTTTCTAATCCGCTT TERM 82 109225 - 109211 - G 80 -10 -4.07568 | opp_overlap 109211 GTCTGCGCGGGAAAA CAGTCC ACT GGACTG TTTTCTAATCCGCTT Avi_7135 109688 - 109395 - | hypothetical protein Avi_7136 109978 - 109685 - | hypothetical protein TERM 83 109961 - 109979 + g 74 -6.8 -4.29738 | GGAATCATATTCGAT TTTGGCAA AGT TTGTCAAA TTTTCCTACATCTGC Avi_7140 110468 - 110992 + | AraC-like transcriptional regulator Avi_7142 111121 - 111663 + | hypothetical protein TERM 84 112080 - 112058 - T 81 -10.6 -3.68988 | overlap 112053 CTGGATCGAAGACAA CGGTCGTCAC GCT ATGACAACCG ACGATAAGAAACAAA Avi_7144 113175 - 112177 - | OmpA family protein TERM 85 113268 - 113241 - H 90 -11.4 -4.00348 | opp_overlap 113249 CCGCAAGCAAGGAAA GGCAATTAGTAC TCTT GTGCTAATTGCC CGGCCCCTATCGTCA TERM 86 113320 - 113345 + H 73 -9 -3.62224 | ACCTCAATCTGCCCG TTGCTGCGGT GGCAAG ACCGCAGCCA TTGTTCGCCAGATAT TERM 87 113391 - 113368 - H 100 -12.4 -4.72846 | opp_overlap 113368 CCAGATATCGAAAAA GGCCGGAGGA ACGG TCGTCCGGCC TTCTCTTTCAGTTTC TERM 88 113368 - 113391 + H 93 -12.4 -3.87979 | opp_overlap 113368 CCAGATATCGAAAAA GGCCGGAGGA ACGG TCGTCCGGCC TTCTCTTTCAGTTTC TERM 89 114260 - 114284 + H 100 -2 -5.88565 | gap 1 GACGAAGATAAGGAA GGTCGGGTGCG ATTT CGC-TGCGGCC TTTTTTTGTTGTCGA Avi_7146 114361 - 114690 + | Restriction endonuclease Avi_7148 115490 - 114792 - | transposase TERM 90 115871 - 115911 + H 70 -10.6 -2.76911 | gap 1, overlap 115871 115901 CATACTGATTACCTA TTG-GTCCTCGGGAGTTTA ATTT TAAATTCCCGAGGACGCCG ATTCCTTGTTTAAAT TERM 91 115871 - 115912 + H 73 -9 -3.63326 | gap 2, overlap 115871 115901 CATACTGATTACCTA TTGG--TCCTCGGGAGTTTA ATTT TAAATTCCCGAGGACGCCGA TTCCTTGTTTAAATT TERM 92 116419 - 116435 + G 88 -5.2 -5.24129 | overlap 116409 TGCAACGGCTGTGTT TTGACA TCGGC TGTCAA TTTTTTCTCAAGACC virH2 115974 - 117344 + | P-450 monooxygenase Avi_7150 117341 - 118090 + | methyltransferase TERM 93 118479 - 118505 + G 78 -6.4 -4.56775 | overlap 118481 118495 AAAGGGATGTTGTTG GGCGATGATGGC CTT GCCCTCAGCGAC TTTTTGCGCAGGGAT Avi_7151 118131 - 118826 + | hypothetical protein Avi_7152 118848 - 119786 + | sulfotransferase Avi_7153 120803 - 119889 - | hypothetical protein TERM 94 120777 - 120761 - G 75 -9.4 -3.85698 | CTTTCGCTTGAGAAA CGTCGC GCGTT GCGACG GGCAGACTGCCAGAT Avi_7154 121797 - 121123 - | transposase TERM 95 123335 - 123347 + G 80 -10.5 -4.07877 | GTGGGGCGGGATTGG CGGCC TTG GGCCG TTGTTTGTGGGATCA Avi_7155 122247 - 123653 + | nitrilotriacetate monooxygenase TERM 96 123730 - 123707 - f 72 -6.7 -4.28254 | gap 1 GGCCAATATGCAAAA CGCCAC-GCC GATCG AGCTGTGGCG AAGGACTTTGTTTGT TERM 97 123911 - 123926 + G 74 -8.2 -4.24948 | overlap 123924 ATTGGTCCCAATGGT GCGGGC AAAA GCTCGC TTTTGAATATCCTCA Avi_7156 123779 - 124573 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) Avi_7157 124570 - 125451 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 98 126464 - 126491 + G 75 -12 -3.28122 | gap 1, overlap 126461 126460 126465 CGCGCCTGCTCGGTT TG-CGGCGTGCGC ATG GCGCACGTCGGCG TCTCTTTCCCTCCTA TERM 99 126465 - 126490 + G 74 -13.3 -2.56391 | gap 1, overlap 126464 126461 126460 GCGCCTGCTCGGTTT G-CGGCGTGCGC ATG GCGCACGTCGGC GTCTCTTTCCCTCCT Avi_7158 125455 - 126507 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 100 126887 - 126876 - g 70 -3.6 -4.56597 | GCCCTGCTGGAAAAA GCCG CAGC CGAC AAGATTCCGCTGATT Avi_7159 126525 - 127853 + | hypothetical protein TERM 101 127865 - 127891 + F 91 -11.5 -4.07568 | gap 1, overlap 127866 TTGATCCATTGAGAT CGGGCGCGCGCG GTAT CGC-CGCGCCCA TTTTGGGAACACAGG TERM 102 127866 - 127890 + F 93 -15 -3.04398 | gap 1, overlap 127865 TGATCCATTGAGATC GGGCGCGCGCG GTAT CGC-CGCGCCC ATTTTGGGAACACAG TERM 103 127940 - 127962 + G 83 -7.6 -4.66537 | opp_overlap 127940 127939 ATATTTTTGCGAAAT GCCCTTGCTG TCG CAGCATCGGC TTTTGTCTTCGCAAG Avi_7160 127916 - 129265 + | hypothetical protein TERM 104 129277 - 129300 + F 100 -16 -4.72486 | CTGATGGGTCATGCA CCGGAGCGGC CCCC GCTGCTCCGG TTTTTGGCGTTTGTC Avi_7161 129417 - 130217 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) Avi_7162 130257 - 131483 + | thermophilic desulfurizing enzyme TERM 105 131920 - 131937 + G 74 -11.3 -3.59698 | overlap 131904 GCTGCGACATCGCGT GGCCTTG ATGT CAAGGCC TTCTATCTGGCATCG tauA 131638 - 132648 + | taurine ABC transporter periplasmic binding protein TERM 106 132667 - 132697 + F 100 -14.1 -4.56597 | gap 1, overlap 132669 ATTGTTAGAGGCTTT C-ATCCCGCTGGCA CGAT TGCCGGCGGGATTG TTTTTGAAAGAGAAC TERM 107 132669 - 132694 + F 100 -16.9 -4.40561 | overlap 132667 TGTTAGAGGCTTTCA TCCCGCTGGCA CGAT TGCCGGCGGGA TTGTTTTTGAAAGAG Avi_7165 132716 - 133507 + | ABC transporter nucleotide binding/ATPase protein Avi_7166 133570 - 134355 + | taurine uptake ABC transporter permease protein TERM 108 134418 - 134384 - T 100 -10.1 -4.84017 | opp_overlap 134383 134381 134384 134386 AACGCTCTATAAAAA CATCACGAAGTCC TGTTGAGAT GGCCTTCGTGATG GTCTTGCTGTGAGCA ssuD 135508 - 134438 - | sulfonate monooxygenase TERM 109 135315 - 135291 - G 71 -6.9 -4.11751 | opp_overlap 135293 ATCAAGGCTTCAAAA CTGCGCGTGCG TGT CGCCAGCGCTG TTGCGACGGTGAATG Avi_7168 136652 - 135594 - | hypothetical protein Avi_7169 137269 - 136667 - | hypothetical protein TERM 110 137124 - 137111 - G 72 -9.5 -3.71649 | opp_overlap 137110, overlap 137109 CAGAAGAGAGAAATA GGGCG ATTT CGCCC GTGCCTTGTCCACCA Avi_7170 137860 - 137282 - | hypothetical protein TERM 111 137361 - 137344 - G 70 -4.9 -4.49958 | gap 1, overlap 137347 AGGCGAGGAAAGAAA TCA-GCTG CGA CAGCGTGA CAATGCCGGTGGTGC Avi_7171 138939 - 137893 - | monooxygenase Avi_7172 140579 - 138936 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 112 139490 - 139513 + g 72 -5.2 -4.5442 | gap 1, opp_overlap 139481 139484 139485, overlap 139491 GATAGACAAGCTGCA CCTTGCGC-CG GAA CGCGCGCAGGC TTTTGTGGTTCAGGC dppC 141454 - 140576 - | ABC transporter membrane spanning protein (dipeptide) TERM 113 141122 - 141103 - G 72 -5 -4.56597 | gap 1, overlap 141104 141112 TGGCTCCGGCAAAAA GGCCAAGCA GGG TGCCTG-CC ACCAGTCCCACGCCC TERM 114 141229 - 141244 + g 77 -11.8 -3.59979 | opp_overlap 141228 141226 141229 CCGTGCCGAGAAGAT GCGCCG CTGA CGGCGC TTTCAACTGCCCGCC dppB 142395 - 141451 - | ABC transporter membrane spanning protein (dipeptide) TERM 115 141953 - 141927 - G 75 -5.8 -4.61566 | GCCGAAACGAGAAAA TCTGGATCAGCA TAA TGCCCAGCCAGA ACACTGGAACCGAGA TERM 116 142447 - 142420 - R 95 -12.6 -4.16943 | CCGCAGATTTCAAAA CCGGGTGGCGGC TGTT GCTGTCACCCGG GTGCTGACCATTACT Avi_7175 144089 - 142458 - | ABC transporter substrate binding protein (oligopeptide) TERM 117 142722 - 142734 + g 72 -4.7 -4.63928 | overlap 142716 142716 ACCACCCTTCTGACG CAGCG CGT CGCGG TTTTTCGGGTAATAT TERM 118 143474 - 143509 + g 72 -6 -4.26903 | gap 1, opp_overlap 143456, overlap 143476 GCGATTTGCCAAGCG TC-TCGGCGCTGACCAC AAA GGGGCCGGAGCCGATGA TTTTGGTGGCATCGC TERM 119 144459 - 144417 - R 100 -13.4 -4.9645 | ACGACAACAAGAAAA GCGAGAGTCTGTCTGGTTCA ATC TGAACCTGGCATACTCGCGC AAGGAACCGATATTT acd 145972 - 144788 - | acyl-CoA dehydrogenase Avi_7180 147003 - 145969 - | desulfurizing enzyme Avi_7181 148698 - 147070 - | ABC transporter substrate binding protein (oligopeptide) TERM 120 147231 - 147241 + g 83 -8.2 -4.62783 | overlap 147230 GGATTTCCTTCCACT GCGC CAC GCGC TTTTTCGGATCAATC TERM 121 147529 - 147515 - G 78 -11.4 -3.71284 | GCTTGACGAATATAA TCCGCG CCA CGCGGA TAGCCTTCACCCGGT Avi_7182 148964 - 149953 + | ABC transporter membrane spanning protein (oligopeptide) Avi_7183 149950 - 150957 + | ABC transporter membrane spanning protein (oligopeptide) Avi_7185 150954 - 151952 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7187 151930 - 152871 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 122 153493 - 153517 + G 78 -9.9 -4.07687 | overlap 153494 GGGCTTGGTGTTGTG TCCTACTCGCC GCT GGCGCGTGGGG TTTTGACGGGCAAAT Avi_7188 152887 - 153936 + | aldo/keto reductase TERM 123 153945 - 153983 + F 77 -12.5 -2.74784 | gap 1, overlap 153940 153940 TGCCTGATCATGGAT GT-GGCAGCCGGGGTG AAGATGAA CACTCCGGCTGCCTGC TCAGTTTTGAAGGAT acd 153997 - 155235 + | acyl-CoA dehydrogenase TERM 124 155279 - 155237 - T 74 -9.9 -3.53012 | gap 1, opp_overlap 155237 155244, overlap 155238 GCCGGGTGTTCTAAA GTTTGATGCCTGTCTGGTGG AGAG CCACCAGACAGGCTTTAT-C AGGGCTTTACTTCAA TERM 125 155244 - 155273 + T 100 -22.3 -3.88583 | opp_overlap 155237 155238, overlap 155237 GTTCTAAAGTTTGAT GCCTGTCTGGTGG AGAG CCACCAGACAGGC TTTATCAGGGCTTTA Avi_7190 156047 - 155286 - | Nitroreductase TERM 126 156071 - 156050 - R 70 -7.3 -4.07687 | gap 1 AGCTGGGTGGCAAAA CACT-TGGCG GGA CGCCATAGCG GGCTTTGATGCGTTC Avi_7191 157852 - 156158 - | ABC transporter nucleotide binding/ATPase protein TERM 127 156966 - 156947 - G 72 -4.8 -4.56775 | overlap 156948 ATTTTTGCTGAAAAA CGGCAGGC CACC GCCACCCG GCAGGGCAAAATCGC TERM 128 157438 - 157485 + g 100 -19.2 -3.66646 | gap 1 GCAACAGGTCTATCG CCCTTTGCCG-CGCCTGCCCCTG ATC CAGCGGCAGGTGGCGGCGAATGG TTTCAATCAGCTGTT Avi_7192 158775 - 157849 - | ABC transporter membrane spanning protein (oligopeptide) Avi_7193 159760 - 158780 - | ABC transporter membrane spanning protein (oligopeptide) Avi_7194 161453 - 159867 - | ABC transporter substrate binding protein (oligopeptide) TERM 129 161698 - 161687 - R 77 -7.2 -4.58395 | opp_overlap 161694, overlap 161689 CGCACCTGGGAAAAA CCGG TTTT CCGG GCGCGGCAAGCCCAG Avi_7195 163000 - 161669 - | monooxygenase Avi_7196 163828 - 163043 - | sulfate ester transporter permease protein TERM 130 163842 - 163864 + r 70 -6.2 -4.18018 | ATGATCACGCCTCCT CCTGCTTCCA GCG TTGCAGCAGG TTTTCGGTGCGCCGC Avi_7197 164649 - 163831 - | ABC transporter membrane spanning protein (aliphatic sulphonate) Avi_7198 165746 - 164673 - | ABC transporter substrate binding protein (aliphatic sulfonate) ssuB 166649 - 165813 - | ABC transporter nucleotide binding/ATPase protein (nitrate/sulfonates) TERM 131 166661 - 166679 + r 83 -10.3 -4.08221 | opp_overlap 166660, overlap 166651 TCATGGATGGAATAT CTCCCTC GTTTG GAGGGAG TTTAGTTATATTCGA TERM 132 166733 - 166765 + r 100 -16.5 -3.15999 | opp_overlap 166731 166760 TAATTGTCGAACAGT TGTCGGATTTTCGTT TTT ACCGAAAATCCGACA TTGGCTGTGTCAGCC Avi_7200 168115 - 166775 - | nitrilotriacetate monooxygenase Avi_7201 169769 - 168138 - | ABC transporter nucleotide binding/ATPase protein (peptide) TERM 133 169499 - 169523 + g 70 -4.1 -4.56597 | opp_overlap 169487 169491 169472, overlap 169502 GCACAAAGCCCACCT TTGTGCCGCGC AAA GCGCGCCATTG TTTTTCACCAAAACC TERM 134 169502 - 169520 + g 85 -10.2 -4.40561 | opp_overlap 169491 169472, overlap 169499 CAAAGCCCACCTTTG TGCCGCGC AAA GCGCGCCA TTGTTTTTCACCAAA dppC 170638 - 169766 - | ABC transporter membrane spanning protein (dipeptide) Avi_7203 171681 - 170635 - | ABC transporter membrane spanning protein (dipeptide) Avi_7206 176063 - 175062 - | hypothetical protein TERM 135 175658 - 175674 + g 72 -4.4 -4.57569 | gap 1, overlap 175661 CCAGCTCTTCCAGTT GCGCCTC AAAC GAGG-GC TTTTTGGCCGGATCG Avi_7207 176317 - 176943 + | acetyltransferase Avi_7208 177000 - 178025 + | monooxygenase TERM 136 178182 - 178208 + G 71 -10.8 -3.53012 | opp_overlap 178205, overlap 178173 CGCCTCGATGGCGCA GCCAGCTTCCTG ACG CTGGAAGATGGC TTTGCCCGCGCCGAC Avi_7209 178062 - 179063 + | hypothetical protein TERM 137 180031 - 180012 - g 75 -4.2 -4.85129 | overlap 180013 ACGACAGACGAAAAA CTGGCACA GGGG CGCGCCAA CAATCTGGATGCAAA Avi_7210 179082 - 180416 + | monooxygenase TERM 138 181104 - 181076 - T 71 -11.1 -2.90798 | gap 1, opp_overlap 181076 181069, overlap 181071 181068 GGATAAACGAGGACA GCGCCACGAACC TTGAAT GGTTC-TGGCGC TGTAATGCTATTTGA TERM 139 181076 - 181104 + T 71 -11.1 -2.8789 | gap 1, opp_overlap 181071 181068 181076, overlap 181069 GGATAAACGAGGACA GCGCCACGAACC TTGAAT GGTTC-TGGCGC TGTAATGCTATTTGA TERM 140 181177 - 181156 - T 100 -13 -5.43866 | opp_overlap 181152 TAATGGGCAAAAAAA CAGGCCCC TTTGTC GGGGCCTG CTCAATGTTTAGCTG Avi_7212 182781 - 181186 - | ABC transporter substrate binding protein (oligopeptide) TERM 141 182331 - 182363 + g 71 -10.5 -3.55444 | opp_overlap 182325 GCTTGGAAAGGATGA GCTTTGCCACCAGCG GAT CGCTGGTATCAATGC TTTCCACGGTGGCAA TERM 142 182405 - 182382 - G 78 -6.6 -4.57569 | opp_overlap 182384, overlap 182384 CCACGGTGGCAAAAA TAGCCCGTCC CCGC GGATGGGCTT CCTTGAGGCGGAAAA TERM 143 182403 - 182384 - G 75 -9.2 -3.90316 | opp_overlap 182384, overlap 182382 ACGGTGGCAAAAATA GCCCGTCC CCGC GGATGGGC TTCCTTGAGGCGGAA TERM 144 182384 - 182403 + g 73 -11.4 -3.33696 | opp_overlap 182384 182382 ACGGTGGCAAAAATA GCCCGTCC CCGC GGATGGGC TTCCTTGAGGCGGAA TERM 145 182440 - 182428 - G 76 -6.9 -4.4267 | overlap 182430 GCGGAAAATCGAAAA GGCGA CAT CCGCC GATGTCAACGGCTTG TERM 146 182687 - 182661 - G 83 -8 -4.64861 | opp_overlap 182660 182677 GCTCGGGAAAATAAA CAATCTTCAGCG TTC CGCCGGAAATTG GCTCTTCTGCGGCGG Avi_7213 183137 - 182799 - | hypothetical protein Avi_7214 184789 - 183191 - | ABC transporter substrate binding protein (oligopeptide) TERM 147 183705 - 183687 - G 72 -8.8 -3.92075 | opp_overlap 183691, overlap 183688 AGCCGCAGGGAGAAA CGGATGCC ATT GGCATCCT TCGGATGTCCGGCCT TERM 148 183704 - 183688 - G 71 -12.3 -2.94924 | opp_overlap 183691, overlap 183687 GCCGCAGGGAGAAAC GGATGCC ATT GGCATCC TTCGGATGTCCGGCC TERM 149 184670 - 184684 + g 80 -9.2 -4.17556 | opp_overlap 184670 GCCCACGGCCACAAA GGTGGC AAT GCCGCC TTTCTTCGAGGTGTC Avi_7215 186025 - 184832 - | hippurate hydrolase TERM 150 184883 - 184871 - G 71 -6.9 -4.10161 | CACCAGCCGGGAAAA CAGGG TTG CCCCG ACGGGCAGAATGGCA TERM 151 184973 - 184961 - G 72 -4.7 -4.59773 | opp_overlap 184961, overlap 184962 GCCGAGGGTGAAAAA CGCAC CGG GGGCG TGCTTGAGCAAGTCG Avi_7216 187280 - 186111 - | monooxygenase TERM 152 186159 - 186149 - G 71 -6.8 -4.14472 | TCAACAGCGGCAAAA TGCG TTC CGCA AAATAATCGAGATCG TERM 153 187599 - 187586 - H 72 -8.1 -3.90766 | overlap 187581 TATTGAGAAATATAA CTCCC AATT GGGAG CCATGGGGCGATCAA TERM 154 188173 - 188163 - g 75 -5.4 -4.59773 | TCTGATCTTGAAAAA GCAA GGC TTGC TGGAAAAGGAATTTG Avi_7220 188026 - 188994 + | ABC transporter substrate binding protein (aliphatic sulfonate) Avi_7221 189020 - 189868 + | ABC transporter membrane spanning protein (nitrate/sulfonates) Avi_7222 189868 - 190605 + | ABC transporter nucleotide binding/ATPase protein nocT 190715 - 191488 + | ABC transporter substrate binding protein (nopaline) TERM 155 191536 - 191573 + F 100 -13.3 -4.08394 | opp_overlap 191541, overlap 191539 191541 191568 GCCCTATATTCACGT GAAGAGCGCCCGGCGGG ATTG TCTGCCGGGCGCATCTC TTTTGAGGAAGATGT TERM 156 191539 - 191571 + F 100 -15.6 -3.63922 | gap 1, opp_overlap 191541, overlap 191536 191541 191568 CTATATTCACGTGAA GA-GCGCCCGGCGGG ATTG TCTGCCGGGCGCATC TCTTTTGAGGAAGAT TERM 157 191568 - 191541 - f 95 -15.5 -3.06671 | opp_overlap 191539 191536 191541 ATATTCACGTGAAGA GCGCCCGGCGG GATTGT CTGCCGGGCGC ATCTCTTTTGAGGAA TERM 158 191541 - 191568 + F 100 -18.4 -2.63623 | opp_overlap 191541, overlap 191539 191536 ATATTCACGTGAAGA GCGCCCGGCGGG ATTG TCTGCCGGGCGC ATCTCTTTTGAGGAA TERM 159 191747 - 191761 + G 75 -4.2 -4.80455 | GGAGCGAAACCGGTG GCGG CGATTGC CCGC TTTTATGTTTGGGTC Avi_7225 191612 - 192271 + | ABC transporter membrane spanning protein (amino acid) TERM 160 192635 - 192622 - g 100 -9.5 -4.98531 | TGGCCAAAGGAAAAA GCGCG TCAG CGCGC CATTGAGCTGCTGAA TERM 161 192740 - 192754 + G 70 -2.1 -4.84311 | gap 1 TTGCCAGAGCCTTAG CAC-CG TCGC CGCGTG TTTTATTGTGTGACG nocP 192268 - 193029 + | ABC transporter nucleotide binding/ATPase protein (nopaline) TERM 162 193208 - 193176 - f 80 -11.5 -3.4052 | opp_overlap 193186, overlap 193186 GCCGAATTCAATTAA TCCACAAAAACAATA GAT TATTGTTCTTGAGGA ATGAAATTGTGCAAA TERM 163 193198 - 193186 - f 79 -4.9 -4.92314 | opp_overlap 193186, overlap 193176 ATTAATCCACAAAAA CAATA GAT TATTG TTCTTGAGGAATGAA Avi_7228 193369 - 194169 + | outer membrane lipoprotein TERM 164 194190 - 194229 + F 70 -10.6 -2.77222 | gap 1, overlap 194189 GAAAAGGCGTTTTAG TGGTG-AGGCGGCGAGGCT TTT GGCTCCGCCGCCTTCGCCC GTTTGGAGTGATAGT Avi_7230 194247 - 195314 + | ABC transporter nucleotide binding/ATPase protein Avi_7231 195319 - 195960 + | ABC transporter membrane spanning protein Avi_7233 196120 - 196920 + | outer membrane lipoprotein Avi_7234 196911 - 198065 + | ABC transporter nucleotide binding/ATPase protein TERM 165 198341 - 198351 + G 74 -2.4 -5.01732 | overlap 198323 198322 TGCCACTGTCGATCA GTGC CAC GCCC TTTTTTGCCCGCATT Avi_7235 198046 - 198699 + | ABC transporter membrane spanning protein TERM 166 199006 - 199032 + F 100 -8.7 -5.41746 | gap 1, overlap 199008 TAACCTTCACACTTC AAGGGCC-TCGG TTTT CCGATGGCCCTA TTTTTTTGACGCCTT TERM 167 199008 - 199030 + F 95 -11.3 -4.34482 | gap 1, overlap 199006 ACCTTCACACTTCAA GGGCC-TCGG TTTT CCGATGGCCC TATTTTTTTGACGCC TERM 168 199215 - 199234 + F 100 -10.6 -4.98531 | GCTTACCGAATTCTA GCGGTCCG CATG CGGTCCGC TTTTTCGTTTCACGG Avi_7237 199739 - 200020 + | transposase Avi_7238 200266 - 200940 + | transcriptional regulator GntR family TERM 169 201044 - 201021 - f 74 -2.4 -5.03747 | overlap 201024 201033 AAACGGCTCAAAAAA GAGGAAAAGT CATG ACGTTTCGTC GCATGGCCGCGTTGG nocT 201032 - 201883 + | ABC transporter substrate binding protein (nopaline) nocQ 201900 - 202670 + | ABC transporter membrane spanning protein (nopaline) nocM 202667 - 203359 + | ABC transporter membrane spanning protein (nopaline) ggt 203401 - 204996 + | gamma-glutamyltransferase Avi_7245 205568 - 205215 - | phospholipase/Carboxylesterase family protein Avi_7246 206186 - 205803 - | hypothetical protein Avi_7250 208208 - 207210 - | transcriptional regulator AraC family Avi_7251 209260 - 208262 - | hypothetical protein TERM 170 209048 - 209029 - G 77 -7.8 -4.26076 | overlap 209030 209041 TGACCTCGATGAAAA TGACTGCG AAAT CGCAGTCG TCGCGGTAGGCCGGA TERM 171 209224 - 209175 - G 71 -10.7 -3.57792 | gap 1, opp_overlap 209175 TCAGCGATTGGCAAA TGCGGCAGAAGCGGTCCGCCCC CGGCAAC GAGGCGGACAGGAT-TGCCGCA TGTATGGCTGTCGAT Avi_7252 210137 - 209280 - | ABC transporter membrane spanning protein Avi_7253 210982 - 210134 - | ABC transporter Avi_7254 212084 - 210993 - | ABC transporter nucleotide binding/ATPase protein TERM 172 211086 - 211061 - G 82 -13.3 -3.28712 | CGCGCGTGGTGACAA TGCCGATGACG TTGC CGTCCTCGGCA ATGGCCACGGCATCG TERM 173 212098 - 212115 + r 70 -6.9 -4.02581 | overlap 212099 ATCGCGTTCCCCGCG CGCCGGT ATTG ACCGGCA TTCTCTTTTGTGGAC TERM 174 212136 - 212167 + r 72 -8.5 -3.75686 | TTTTGTGGACGTCAG GGCCGGGCCGCCG CCATCA CGAAAGCCCGGCC TTCTCATTTTATTCA Avi_7255 213027 - 212176 - | ABC transporter substrate binding protein (glycine-betaine) TERM 175 212622 - 212641 + g 72 -5.6 -4.42639 | overlap 212626 CGATGCCGATGATCT TGCCGCCG AACT TGTCGGCA TTTTCGTTCAACTGT Avi_7256 214452 - 213106 - | oxidoreductase dhaL 215966 - 214449 - | aldehyde dehydrogenase TERM 176 214865 - 214879 + g 78 -8.6 -4.15565 | opp_overlap 214865 CCCCGCCATGGACAA CAGAGA GCT TCTCTG TTTTCGCATCATCGA dapA 216870 - 215959 - | dihydrodipicolinate synthase TERM 177 216238 - 216222 - G 75 -9.4 -3.86897 | CGCAGGCTTCATAAA GCGCGA CATGC TCGCGC GGCAGGAAGTTCGAG TERM 178 216259 - 216269 + g 70 -2.4 -4.72272 | GAAGTTCGAGCCAGC GCAG ACC CAGC TTTTTGCTCCCCAGG Avi_7259 217577 - 216867 - | transcriptional regulator GntR family TERM 179 217038 - 216992 - G 83 -13.6 -3.33798 | opp_overlap 216992 217035 CAAACACGAGATCAA CGACGGCATCTTCGTCACGCGC GCT GATCGCGGCGATAATGCCGTCG TGGTGTCCGACTGAT TERM 180 218092 - 218115 + G 88 -11 -4.11371 | GCGAGAAATATGGAC TGTCTCGCAC ACCT GTGCGTGACA TTTTCCGCCGTCTTG Avi_7262 217980 - 218669 + | transcriptional regulator GntR family Avi_7263 219026 - 218712 - | transposase Avi_7264 219073 - 219225 + | truncated Tnp Avi_7265 220255 - 219320 - | Ethanolamine kinase Avi_7266 221236 - 220271 - | aminoglycoside phosphotransferase TERM 181 220672 - 220656 - G 70 -2.2 -4.82901 | overlap 220660 TGGGCCGCACAAAAA TCAACG CCAGC CGCCGA AATGGCGGAGTAGAG amaB 222468 - 221233 - | N-carbamoyl-beta-alanine amidohydrolase TERM 182 222206 - 222192 - G 88 -11.4 -4.11692 | CACGCACCGCCAAAA CGGCCT CGC AGGCCG CAACGACGCCCAGTG Avi_7268 223282 - 222521 - | transcriptional regulator DeoR family TERM 183 223030 - 223045 + g 72 -4.6 -4.56775 | overlap 223031 CCATGGAGGCCGCAG CCTCGC CGAT GCGAGC TTTTTCCCGGGCGCT moaD 225182 - 223338 - | ABC transporter nucleotide binding/ATPase protein TERM 184 223588 - 223601 + g 78 -8.1 -4.53303 | TCCAGCGTTGGCATG GCGCT GAGC AGCGC TTTTGTGTAGGGATG TERM 185 224578 - 224558 - G 84 -4 -5.20222 | gap 1 AGGAAACAAACAAAA CGGCCGTAT CGAA AT-CAGCCG TCAGCTCTTTCATCA dppC 226102 - 225182 - | ABC transporter membrane spanning protein (dipeptide) Avi_7271 227079 - 226099 - | ABC transporter membrane spanning protein (oligopeptide) TERM 186 227108 - 227142 + r 72 -10.6 -3.09327 | GCTTCGGTCCTGATG GTCGCCGCACGCTGAA ATC TCCGGCGTGCGGCCAG TCTTACGTCCGGTGC Avi_7272 228748 - 227162 - | ABC-type dipeptide transport system, periplasmic component TERM 187 227689 - 227699 + g 76 -6.8 -4.44245 | overlap 227682 227681 CAGCTTCCGCCAGCA GTGC CTG GCAC TTTTCTGGATCGTAT Avi_7273 229181 - 230149 + | DNA topoisomerase TERM 188 233112 - 233124 + G 75 -9.1 -3.96148 | TAGCGTCGCGTTTTC TGGCG GCA CGCCA TTTGTCGTCGAAGGC Avi_7274 230317 - 233289 + | hypothetical protein Avi_7275 233913 - 233401 - | hypothetical protein TERM 189 234362 - 234372 + G 74 -8.2 -4.25104 | opp_overlap 234356 234357, overlap 234361 GGACGAACATGCGTT GCGC GAC GCGC TTTTGCTGACGGCGC Avi_7276 234111 - 235064 + | hypothetical protein Avi_7277 235067 - 235753 + | hypothetical protein Avi_7278 236444 - 235794 - | Transcriptional regulator Avi_7279 236582 - 238144 + | hypothetical protein TERM 190 238449 - 238475 + G 71 -8.1 -4.07568 | gap 2, overlap 238453 238454 AGCCGCGAGGCGATC GACAGCGCGAAGG CAT CCTTC-CGC-GTC TTTTCCCGCAAGGGG Avi_7280 238155 - 238655 + | Electron transport protein SCO1/SenC Avi_7281 239090 - 239491 + | hypothetical protein Avi_7282 239488 - 240621 + | HlyD family secretion protein TERM 191 242560 - 242532 - g 70 -3.9 -4.58685 | gap 1 AAAGCTTTGGAAAAA GTGCCCGGTCTC CGCCTT GAAAC-AGGCAC TGGCGGGAATGGCAC TERM 192 243099 - 243089 - g 83 -5.4 -4.91712 | GCCAAGCTATAAAAA CTTG CCA CAAG GGGTAAAATTTGTCG Avi_7283 240618 - 243674 + | Acr family transporter fecR 244750 - 243791 - | two component sensor kinase TERM 193 244042 - 244062 + g 72 -6.7 -4.2717 | overlap 244037 244035 GAGCGACGAGGCCGT CGACCGGCG TCA CGGCTGTCG TTTTCCTGGCGTAGT TERM 194 244699 - 244709 + g 71 -8.2 -4.07678 | GCAAAAGCCAGTCGG CCGC CTC GCGG TTTCGTCTTTTCCGA TERM 195 245091 - 245034 - R 70 -4.1 -4.68919 | gap 1, overlap 245043 245046 AAAGACAAACGAAAA CGAAAGAAACGAGAGTCAGTCTGGTTCA ATT TGAACCTGACTGACTCTAGAGAAT-CCG GTCAAGGCAATGGGC TERM 196 245083 - 245043 - R 100 -19.9 -4.67692 | overlap 245034 245046 CGAAAACGAAAGAAA CGAGAGTCAGTCTGGTTCA ATT TGAACCTGACTGACTCTAG AGAATCCGGTCAAGG TERM 197 245080 - 245046 - R 100 -20.2 -3.23149 | overlap 245043 245034 AAACGAAAGAAACGA GAGTCAGTCTGGTTCA ATT TGAACCTGACTGACTC TAGAGAATCCGGTCA Avi_7286 245622 - 245080 - | sigma factor fecE 246710 - 245916 - | ABC transporter nucleotide binding/ATPase protein (iron (III) dicitrate) fecD 247683 - 246700 - | ABC transporter TERM 198 247310 - 247299 - G 70 -3.6 -4.62336 | overlap 247301 AGGCGAGTGCAAAAA CGGC AAGG GCCA TGGCGCTGGCACCCA fecC 248708 - 247680 - | ABC transporter membrane spanning protein (iron(III) dicitrate) fecB 249640 - 248705 - | ABC transporter membrane spanning protein (iron(III) dicitrate) TERM 199 249256 - 249244 - G 78 -9.1 -4.10657 | opp_overlap 249242 CCATATGCTTGAAAA GCACC GTT GGTGC AATCTTGGCAGCCTG TERM 200 249691 - 249662 - R 100 -16.4 -4.35524 | overlap 249663 GCCGGAAATCGAAAA CGGCTGCGGGGG TAATGC CCCCCGCAGCCC GAGATAATCAGAACT TERM 201 249690 - 249663 - R 100 -19.9 -3.20832 | overlap 249662 CCGGAAATCGAAAAC GGCTGCGGGGG TAATGC CCCCCGCAGCC CGAGATAATCAGAAC Avi_7293 252206 - 249699 - | TonB-dependent receptor Avi_7294 253181 - 252303 - | hypothetical protein grsT 254032 - 253238 - | thioesterase mcyB 255603 - 254029 - | microcystin synthetase B Avi_7298 263449 - 255728 - | peptide synthetase TERM 202 258062 - 258084 + g 73 -3.3 -4.77896 | overlap 258076 AAGGCTCGGTGGCAG CGGTTCGCC CGCAA GGCAGACTG TTTTTGCCTTGGTTG TERM 203 258232 - 258214 - G 72 -6 -4.3129 | overlap 258216 CATCGACGATGAAAA TTCGCC CACCAGC GGCGAA CGTCACGAAAATTTC TERM 204 262424 - 262409 - G 86 -6 -4.94972 | overlap 262411 GAGCAGAACCAAAAA GGCCGG ATCG CCGGAC AGGTCGTTGCGAAAG Avi_7299 267846 - 263446 - | polyketide synthetase TERM 205 263709 - 263698 - G 74 -7.2 -4.4009 | GCCGAGTTCATAAAA GCCG TCAT CGGC CCCGATGGGTGACAG TERM 206 265194 - 265208 + g 82 -10 -4.18506 | AGAGGCCGGGGCCTT CAGCAG GTG CTGCTG TTCTTTTGGGCGTGG TERM 207 266697 - 266710 + g 75 -5.2 -4.56597 | overlap 266696 266695 CATAGTGGAGGCTTG CCGG AATCCG CCGG TTTTTCAGGGCCAGC Avi_7300 268440 - 267880 - | hypothetical protein Avi_7301 269015 - 268437 - | hypothetical protein mcyE 270652 - 269252 - | polyketide synthase and peptide synthetase Avi_7304 271539 - 270649 - | hypothetical protein Avi_7306 276040 - 271520 - | peptide synthetase TERM 208 272008 - 272026 + g 74 -8.1 -4.16842 | opp_overlap 271997 GATAGCCCTGCATGA GCCGGCA CAGGA TGTCGGC TTTGTTGAAAGTGCC TERM 209 272267 - 272252 - G 75 -11.8 -3.2661 | overlap 272247 272245 GGAAATAAGATGCAA GGGCCG TCCT CGGCCC ACCGCCGCCAGCCGG TERM 210 273056 - 273037 - G 71 -11.4 -3.21912 | GTGGCAAGCGATCAA GCCAGACG AAGG CGTCCGGC ACGAGGTAGCGGGGC TERM 211 277157 - 277172 + G 77 -10.4 -3.87815 | GCCTGCCTCGTTCCT GCGCAG GCCT CTGCGC TTTCTGGAGCTGGCA TERM 212 277195 - 277222 + G 87 -7.6 -4.72272 | opp_overlap 277193 AGCTGGCAAGCCATG TTCGCGCCACCG TCAT TGGCGGCCCGAA TTTTTCCTACGAGCA Avi_7308 276366 - 278633 + | polyketide synthetase TERM 213 279290 - 279310 + G 71 -11.1 -3.25823 | overlap 279297 GCGTTCAGGCGACTT GTGCCACGG CGC TCGTGGCGC TTCATCTCGCGGCAC TERM 214 279431 - 279450 + G 71 -10.7 -3.53811 | opp_overlap 279418 AAGGCATCGCCTCCC CGGACGG GGCATG CCGTCCG TTTGACGCCAATGCC TERM 215 281347 - 281317 - g 75 -5.3 -4.56597 | gap 1, overlap 281320 CTTGTTGCCGAAAAA GATGCAGGCCCGCG CCGC CGCGTGCC-ACTTC CAACCTACCCTTTTC TERM 216 281620 - 281610 - g 74 -6.8 -4.27617 | CATAGCCTATGAAAA TGCC GGG GGCA CGTATCACATCGACT Avi_7309 278797 - 283257 + | polyketide synthase TERM 217 283408 - 283432 + G 72 -9.9 -3.68619 | overlap 283409 ATGACAATGGCCTGA GCGCGCTCTGG GTG CCAGAGCGCCA TTTCCATGCCTTCGG TERM 218 283409 - 283431 + G 76 -13.4 -2.8085 | overlap 283408 TGACAATGGCCTGAG CGCGCTCTGG GTG CCAGAGCGCC ATTTCCATGCCTTCG Avi_7310 283302 - 284369 + | monooxygenase TERM 219 286433 - 286466 + G 74 -8.1 -4.11216 | gap 1 CACCTGCGCTCTATG GCCGTCTCGCCGGG GCTTGCG CCCGGTGAT-CGGC TTTTGGCAATCACCA TERM 220 288283 - 288298 + G 79 -6.8 -4.56597 | overlap 288271 288287 GCACGCTCTTGCCGA TCTGCC GCAA GGCGGA TTTTTGGGAGAGACA Avi_7311 284375 - 290926 + | peptide synthetase TERM 221 291867 - 291919 + G 71 -10.6 -3.53761 | gap 2 TGCTCGTCGGCTATC GCTGGGGCG-AAGGTC-GGCGGCAGG ACG CCTATCGTCAGGCGTTGCGCTCCAGC TTTGCGGCGACCTTG Avi_7312 290930 - 292306 + | hypothetical protein Avi_7313 292394 - 292912 + | hypothetical protein Avi_7315 294453 - 293638 - | hypothetical protein TERM 222 294280 - 294296 + g 73 -12.3 -3.14602 | opp_overlap 294279 294278, overlap 294278 ATCTTTTATGAAATT CGCCAGA ATA TCTGGCG TGTTGGTGAAATAGG Avi_7317 294815 - 294618 - | transposase TERM 223 295062 - 295072 + H 93 -8.2 -4.82901 | opp_overlap 295062 CTATATTACCGGAAA GCCC ATC GGGC TTTTTATGCAGGGAC TERM 224 296385 - 296370 - g 72 -4.6 -4.66609 | opp_overlap 296378 CATTGCAGTTAAAAA GAAGGC CATG GCCTGC ATCAAGGCGCTAGGT TERM 225 296655 - 296640 - g 72 -4.6 -4.57073 | opp_overlap 296648, overlap 296645 CATCGCCGTCAAAAA GAAGGC CATG GCCTGC ATCAAGGCGCTGGGT Avi_7320 295759 - 298083 + | methyl-accepting chemotaxis protein TERM 226 298225 - 298280 + T 72 -10.3 -3.38046 | overlap 298225 298230 298232 298233 TAGCGTCCCTGAGTA TCCTCGATCCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGGCTATTGGC TATTTGACGTAAGCG TERM 227 298230 - 298275 + T 100 -16.2 -3.24289 | overlap 298225 298225 298232 298233 TCCCTGAGTATCCTC GATCCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGGCTA TTGGCTATTTGACGT TERM 228 298232 - 298273 + T 100 -18.8 -3.182 | overlap 298230 298225 298225 298233 CCTGAGTATCCTCGA TCCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGGC TATTGGCTATTTGAC TERM 229 298233 - 298272 + T 100 -22.3 -2.50438 | overlap 298232 298230 298225 298225 CTGAGTATCCTCGAT CCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGG CTATTGGCTATTTGA asg 299899 - 298934 - | asparaginase TERM 230 299473 - 299485 + g 72 -4.8 -4.56597 | AGGACTGTTCCACCA TCGG CAGGC CCGA TTTTTGGGCAAAGGC Avi_7323 300754 - 299936 - | hypothetical protein dppC 301742 - 300840 - | ABC transporter membrane spanning protein (dipeptide) TERM 231 301687 - 301668 - G 71 -7.8 -4.08692 | GAATTTGCGCCAAAA TTCGCTCC AAGG GGTGCGAA CAGCGCGGCTGGTCT dppB 302670 - 301750 - | ABC transporter membrane spanning protein (dipeptide) TERM 232 302759 - 302792 + r 74 -7.4 -4.09511 | gap 1, opp_overlap 302760, overlap 302760 GAAATGCGTAAAAGG AGTG-TCTCGGCGCT AGATC AGCGCCGGGATCGCG TTTTCAGAAGGTGTT TERM 233 302760 - 302791 + r 72 -10.9 -3.05224 | gap 1, opp_overlap 302760, overlap 302759 AAATGCGTAAAAGGA GTG-TCTCGGCGCT AGATC AGCGCCGGGATCGC GTTTTCAGAAGGTGT dppA 304359 - 302806 - | ABC transporter substrate binding protein (dipeptide) TERM 234 303447 - 303415 - G 71 -12.8 -2.57132 | gap 1, overlap 303414 GCCTTCTGGCACAAC GCCTTCGGCGGGCTT GGCA AAGCC-GCTGAAGGC CACCTTGGCAAGGGC Avi_7329 306283 - 304403 - | ABC transporter nucleotide binding/ATPase protein TERM 235 304572 - 304583 + g 79 -5.8 -4.8048 | opp_overlap 304542, overlap 304542 304541 TCGGCAATCGGCACG GCTG CCAT CAGC TTTTTGGTATAGGGG TERM 236 304634 - 304618 - G 87 -9.4 -4.56597 | opp_overlap 304617 304618 GCGGGTTTTCAAAAA TGGCCC GGCGT GGGCCA ATTTCAACAATCTGC TERM 237 305428 - 305406 - G 72 -6.3 -4.371 | gap 2, overlap 305408 CCCACCAGATCAAAA GCGCGCGGACC ATC GGTCC-CG-GC CATGGCCCCAAGGCG TERM 238 305975 - 305936 - G 74 -11.6 -3.53224 | gap 1, opp_overlap 305972, overlap 305939 CATCGGCTCTTGAAA GATCATG-GCAATATCCGC ACC GCGAATACTGCGCATGGTC GGCGTATCGGCCTTT Avi_7330 307262 - 306321 - | transcriptional regulator Avi_7332 307726 - 308790 + | Transcriptional regulator/sugar kinase xylR 309997 - 308759 - | transcriptional regulator ROK family TERM 239 309234 - 309249 + g 75 -11.8 -3.29144 | opp_overlap 309213 AACGGTCTGGTTTCA CCGGCC AATG GGCCGG TTGTGACCGCCGTGG TERM 240 309388 - 309369 - G 85 -3.5 -5.48787 | AGAATATAGAAAAAA CTGCGCA TTTCGG TGCCCAG CCCATATTCAATCTC Avi_7334 313100 - 310077 - | alpha-D-mannosidase TERM 241 311313 - 311273 - G 71 -10.5 -3.61268 | gap 2, overlap 311276 CAGGCAATTGCGAAA GAATGGCATCGACGGCAGC TTTTT GC-GCCGCCG-CGCCATCC ATCAGCACCTGTTCA TERM 242 311310 - 311276 - G 72 -8.6 -3.94 | gap 2, overlap 311273 GCAATTGCGAAAGAA TGGCATCGACGGCAGC TTTTT GC-GCCGCCG-CGCCA TCCATCAGCACCTGT TERM 243 312479 - 312498 + g 72 -6.4 -4.2828 | opp_overlap 312481, overlap 312481 CAGGGTCGGCCTTTA AATCTGGC AGCT GCCAGATC TTTTGCTGCATCACC Avi_7335 313976 - 313134 - | ABC transporter membrane spanning protein (sugar) TERM 244 313896 - 313883 - G 79 -5.9 -4.78848 | overlap 313885 GCGCCAAAGACAAAA GCCAC AGCA GCGGC CATGCGAAAAAAGCA Avi_7336 314815 - 313973 - | ABC transporter, permease protein TERM 245 314956 - 314927 - R 95 -12.1 -4.02334 | overlap 314928 GATTCAGATCACAAA GCGCTGCGGAACC CTTT GGTCCCGCAGCAT CAAAGGGAGTTCAGT TERM 246 314955 - 314928 - R 95 -15.6 -3.00918 | overlap 314927 ATTCAGATCACAAAG CGCTGCGGAACC CTTT GGTCCCGCAGCA TCAAAGGGAGTTCAG Avi_7337 316262 - 314967 - | ABC transporter substrate binding protein TERM 247 315082 - 315118 + g 70 -12.1 -2.74322 | opp_overlap 315080 315092, overlap 315081 ATCTGATTGGAAATT TCGGGATAGACCGGCGC ACC GGGCCGGGCTTGCCCGA CTTTCAGGGCTTCCG Avi_7338 316447 - 317445 + | ABC transporter nucleotide binding/ATPase protein (sugar) attR 319251 - 317614 - | transacetylase TERM 248 317815 - 317837 + g 71 -12 -2.90075 | overlap 317817 AGTTGCGATTTCCAT CGCCTCGTCG CGG CGATGAGGTG TCTGCTTCAGGCAAA TERM 249 318048 - 318017 - G 78 -3.6 -4.95155 | gap 1, opp_overlap 318022, overlap 318020 318021 GTCAGACGATAAAAA CCA-TTGACCGGCTG CAA CAGCCCGTCTTCTGG TGTCACCGTACCCCA TERM 250 318022 - 318042 + g 73 -11.1 -3.4678 | opp_overlap 318021 318020 318017 ACGATAAAAACCATT GACCGGCTG CAA CAGCCCGTC TTCTGGTGTCACCGT Avi_7340 321104 - 319257 - | hypothetical protein TERM 251 319972 - 319994 + g 70 -4 -4.56597 | overlap 319973 319974 319989 ACGATATTGCCCGGC GTGTGCATGG CCA CCATGCCCGG TTTTTCGAGCGGCAC TERM 252 321165 - 321136 - R 76 -12.2 -2.60075 | opp_overlap 321134 321133, overlap 321135 CTGTTTCGAATGAAT TGGCCGCAGG AAGGTGTGAA CCTGCGGCCA GACTTGCTGTGGACT Avi_7341 322459 - 321179 - | sugar ABC transporter sugar-binding protein Avi_7342 323219 - 322509 - | hypothetical protein Avi_7343 324341 - 323232 - | ABC transporter nucleotide binding/ATPase protein Avi_7344 325528 - 324356 - | Unsaturated glucuronyl hydrolase TERM 253 325127 - 325177 + g 90 -16 -3.53091 | GTAGCGTTCGATCAG CTGGTCGGCGGCAAGGAGTGCCGC CTT GCGTCCATCCTCGTCGCCCACCAG TTTCCACGCGGCAAT Avi_7346 326369 - 325533 - | ABC transporter membrane spanning protein (sugar) TERM 254 326133 - 326114 - G 71 -7.2 -4.24123 | gap 1 TCAACAATTGCAAAA GCGTGACGA TGA TCGTCA-GC TTCGAGGTGTTGTAG TERM 255 326250 - 326240 - G 77 -2.4 -5.0916 | TCGGGAAGACAAAAA CGTC GCG GTCG AGCTTTAGCGAGGCC Avi_7347 327335 - 326373 - | ABC transporter membrane spanning protein (sugar) TERM 256 327416 - 327438 + H 70 -6.2 -4.24342 | GTTGCACCCGTCTCC CGATCCCTGC ATA GCATAGATCG TTTATTGGTCAAACA Avi_7349 327547 - 329352 + | hypothetical protein Avi_7350 329364 - 330149 + | hypothetical protein Avi_7351 331007 - 330153 - | transcriptional regulator GntR family TERM 257 330235 - 330248 + g 93 -9.5 -4.72986 | AGATGATCCTGCATA GCGGC GCGG GCCGC TTTTTCGTCGCCGTC TERM 258 330860 - 330877 + g 77 -7.7 -4.27316 | gap 1, overlap 330862 GTGCGACCAGGGAGC CA-GCGCC CTT GGCGCGTG TTTTCACTTGACCGG ych 331283 - 331026 - | hypothetical protein Avi_7353 331832 - 331392 - | hypothetical protein TERM 259 332172 - 332152 - H 73 -9.6 -3.60818 | GGAAAATCGCTTAAA CGGCGTGC GCAAG GCGCGCCG TCCTGGGAGGAGAAC Avi_7355 332202 - 333254 + | ABC transporter nucleotide binding/ATPase protein (sugars) TERM 260 333279 - 333318 + F 90 -11.4 -3.9392 | GGGAAAAGTGGAAGC CTGCTTTCGCCCGTCCAC GGGA GGGGACATGTGAAAGCAG TTATTTGACATAGGC TERM 261 334652 - 334631 - g 70 -4.3 -4.68512 | TGAGAAGAAAAAGAA GGCAGCC TGGAGTGC GGCGGCC CATCTCGGCGGCAAG Avi_7356 333642 - 335015 + | ABC transporter, binding protein TERM 262 335046 - 335023 - f 95 -12.4 -4.18018 | opp_overlap 335023 335027, overlap 335037 335038 GCGTTTGAGCCAAAA CCGACGGCAG GAAA CTGCCGTTGG TGTTCCCAAACGGCG TERM 263 335023 - 335046 + F 93 -14.6 -3.01712 | opp_overlap 335023 335037 335038, overlap 335027 GCGTTTGAGCCAAAA CCGACGGCAG GAAA CTGCCGTTGG TGTTCCCAAACGGCG TERM 264 335027 - 335042 + F 72 -10.4 -3.36273 | opp_overlap 335023 335037 335038, overlap 335023 TTGAGCCAAAACCGA CGGCAG GAAA CTGCCG TTGGTGTTCCCAAAC TERM 265 335093 - 335057 - f 71 -9.5 -3.53012 | gap 1, opp_overlap 335057 335060, overlap 335037 335038 335058 GTTGGTGTTCCCAAA CGG-CGTCAGGCGG CTTTCTCATT CCGCCTGACGTCCA TTCATCAGCCTAAAG TERM 266 335091 - 335058 - f 70 -11 -2.71712 | opp_overlap 335057 335060, overlap 335037 335038 335057 TTGGTGTTCCCAAAC GGCGTCAGGCGG CTTTCTCATT CCGCCTGACGTC CATTCATCAGCCTAA TERM 267 335060 - 335089 + F 76 -12.2 -2.56715 | opp_overlap 335037 335038 335058 335057, overlap 335057 GGTGTTCCCAAACGG CGTCAGGCGG CTTTCTCATT CCGCCTGACG TCCATTCATCAGCCT Avi_7357 335160 - 336269 + | ABC transporter membrane spanning protein (sugar) Avi_7358 336280 - 337200 + | ABC transporter membrane spanning protein Avi_7360 337242 - 337697 + | hypothetical protein rbsK 337708 - 338634 + | ribokinase TERM 268 338702 - 338686 - f 72 -8.1 -3.89346 | opp_overlap 338677 TTTTTACTTTACAAA TCACAAA TAT TTTGTGA AGTATGAAGTGTAGT Avi_7362 338738 - 339718 + | xylose isomerase TERM 269 339784 - 339766 - f 74 -8.8 -3.90291 | opp_overlap 339767, overlap 339767 ACCTTTGTAACCAAA GGCATGCC GGA GGCATGCT TGATGATACCACCTG TERM 270 339767 - 339783 + F 81 -12.3 -3.21218 | opp_overlap 339767 339766 CCTTTGTAACCAAAG GCATGCC GGA GGCATGC TTGATGATACCACCT TERM 271 339783 - 339767 - f 78 -12.3 -2.93853 | opp_overlap 339767, overlap 339766 CCTTTGTAACCAAAG GCATGCC GGA GGCATGC TTGATGATACCACCT Avi_7364 339924 - 340874 + | ABC transporter substrate binding protein TERM 272 340885 - 340915 + F 100 -19.8 -3.06696 | opp_overlap 340879 340876 340889 AATAATCGAGGTTAA CGCACTGCCAGCTT TCA GGGCTGGCAGTGCG TGTCTTGCAGGAGGA TERM 273 341307 - 341344 + G 71 -10.5 -3.53563 | gap 1, opp_overlap 341299 341301 GCAGGAACAGCGGGC CGCCGAAGC-GCTGTCGA TGA TCGACCGCAGCATCGACG TTTCCGCGCCCATCT TERM 274 341471 - 341521 + G 72 -6.4 -4.27843 | gap 4 TGACGCCGAGCGAGT TCGAC-CG--GCTGGCTGAGGTGATT GCC GATC-TCTCGGCCAGCGGCGTGTCGA TTATTTATGTTTCGC TERM 275 342066 - 342049 - g 93 -12.7 -4.13945 | opp_overlap 342048 342047 ATCCGCACCGGAAAA CTGCGCG CCAG CGCGCAG GATTTGCTGAAGCGT rbsA 340939 - 342459 + | ABC transporter nucleotide binding/ATPase protein (ribose) rbsC 342479 - 343456 + | ABC transporter membrane spanning protein (ribose) Avi_7367 343453 - 344328 + | transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) Avi_7369 344325 - 345224 + | ribokinase TERM 276 345326 - 345284 - T 78 -9.2 -3.97437 | overlap 345285 345288 345320 ACGAAAACAAGAGAA TTTAGAGTCTGTCTGGTTCA ATC TGAACGTGACAGACTCTAGG CTAAAGGTTTCACCC TERM 277 345325 - 345285 - T 78 -12.7 -2.96836 | overlap 345284 345288 345320 CGAAAACAAGAGAAT TTAGAGTCTGTCTGGTTCA ATC TGAACGTGACAGACTCTAG GCTAAAGGTTTCACC TERM 278 345322 - 345288 - T 90 -14.4 -2.69386 | overlap 345285 345284 345320 AAACAAGAGAATTTA GAGTCTGTCTGGTTCA ATC TGAACGTGACAGACTC TAGGCTAAAGGTTTC Avi_7370 346077 - 345322 - | transcriptional regulator Avi_7371 346190 - 347104 + | zinc-binding oxidoreductase TERM 279 347574 - 347588 + G 72 -8.6 -3.90318 | opp_overlap 347569 347567 ATTGAGAACATGGCC CCTTTG GAG CAAAGG TTTCTCCAGTCATCC Avi_7373 347511 - 348617 + | hypothetical protein Avi_7374 350341 - 348707 - | ribitol kinase TERM 280 350284 - 350252 - G 75 -9.7 -3.83205 | overlap 350254 350255 ACCGCTCAGATCAAA CAGGCCGGCACGGGC GCT GCCTGTGCCGACGTC GACGCCGATAATGTA TERM 281 350282 - 350254 - G 77 -12.3 -3.5032 | overlap 350252 350255 CGCTCAGATCAAACA GGCCGGCACGGGC GCT GCCTGTGCCGACG TCGACGCCGATAATG TERM 282 350281 - 350255 - G 84 -15.8 -2.69871 | overlap 350254 350252 GCTCAGATCAAACAG GCCGGCACGGGC GCT GCCTGTGCCGAC GTCGACGCCGATAAT TERM 283 350391 - 350411 + r 75 -11.9 -3.02144 | TGAGGATGAGGATGA GCGTCGATT AAA GATCGACGC TGTTGGGCACAATCA rdh 351126 - 350398 - | ribitol 2-dehydrogenase xylH 352411 - 351152 - | ABC transporter membrane spanning protein (xylose) xylG 353241 - 352408 - | ABC transporter nucleotide binding/ATPase protein (xylose) TERM 284 353315 - 353331 + r 70 -4.3 -4.57073 | opp_overlap 353316, overlap 353316 CAGATCAGAACAATT ACTGGGT GAT GCCCAGC TTTTTGCAGCCAGTG xylF 354359 - 353313 - | ABC transporter substrate binding protein (xylose) TERM 285 354152 - 354162 + g 77 -8.2 -4.2828 | GCTGAAGTGCGGTAT CGCC ATT GGCG TTTTGATAAATCACC TERM 286 354539 - 354504 - H 100 -17.8 -3.43217 | overlap 354495 TCCAAAGCCAACCAA CTTCATCGATTGAGCA ACGT TGCTCAATCGATGACG CAAGAATTGCCATCT TERM 287 354664 - 354680 + G 75 -8.7 -4.08064 | TGCGGGCACATCGGC CAGCGCT GTG AGTGCTG TTTTGAACGGCAATT TERM 288 355155 - 355144 - g 83 -4.4 -5.0538 | TCGTATTCTAAAAAA TTGC CACA GCAA GACCGGCAAGGCCGC Avi_7379 354596 - 355639 + | transcriptional regulator LacI family TERM 289 356019 - 356050 + F 72 -8.6 -3.81027 | gap 1, opp_overlap 356019 ATTCGTACTGAACAA CGCGCTCGCCCTACC CAT GGTTTGGCGGGC-CG TTTGCGTTGATTGCA Avi_7380 356152 - 356562 + | hypothetical protein Avi_7381 357940 - 356732 - | permease Avi_7382 358990 - 358001 - | transcriptional regulator AraC family TERM 290 359432 - 359452 + H 75 -5.4 -4.72272 | TCAACGATCGTGTCG TGCGGTTG AAAAG CGACTGCA TTTTTCCTGGGGAGA nrdH 359928 - 360227 + | glutaredoxin protein nrdI 360238 - 360654 + | nrdI protein Avi_7387 360696 - 362777 + | ribonucleoside-diphosphate reductase alpha subunit nrdF 362792 - 363781 + | ribonucleoside-diphosphate reductase 2 beta chain TERM 291 364041 - 363983 - T 85 -14 -2.75769 | gap 3, opp_overlap 363983, overlap 363979 CCTTCAAATTACAAC CGAGCCGGGCTG-CGATCAAC-CACCATG GGAC CACCGTGCGGTG-CCGTCAGCCCGGCTCG TCTGATACGGCCAGA Avi_7389 364340 - 364029 - | transcriptional regulator Avi_7390 364439 - 365530 + | xenobiotic reductase A TERM 292 365588 - 365556 - f 100 -17.2 -3.48395 | opp_overlap 365554 365553 365586, overlap 365559 365578 ACCGTCGCGACAGAA TAACCACCGCGATT AAGGA AACCGCGGTGGTTA CAGTTTGTAATCTCT TERM 293 365585 - 365559 - f 100 -14.5 -3.88232 | opp_overlap 365554 365553, overlap 365556 365578 GTCGCGACAGAATAA CCACCGCGATT AAGGA AACCGCGGTGG TTACAGTTTGTAATC TERM 294 365660 - 365627 - f 70 -4.5 -4.52589 | gap 1, opp_overlap 365629, overlap 365629 TGGCGCGATAGAAAA GAGCGGC-AGTCTTTG CGA CAGAGGCTCGCCGCTT CTGTCGCACGGTCCA TERM 295 365629 - 365658 + F 82 -11.5 -3.48593 | gap 1, opp_overlap 365627 365629 GCGCGATAGAAAAGA GCGGC-AGTCTTTG CGA CAGAGGCTCGCCGC TTCTGTCGCACGGTC gatA 366219 - 367574 + | glutamyl-tRNA amidotransferase subunit A Avi_7393 367608 - 368393 + | ABC transporter substrate binding protein (amino acid) TERM 296 368414 - 368433 + F 88 -8.5 -4.64676 | GAGTGAAGGGTTGGA GCCGGTC CTTCAT GGCCGGC TTTTCTTCAAACTCG Avi_7394 368464 - 369186 + | ABC transporter membrane spanning protein TERM 297 369776 - 369797 + G 75 -10.1 -3.66897 | opp_overlap 369775 ACCTTTCGAACCTAC GAGCCGCTG CTCG CAGCAGCTC TTGTCTACTTTGTCC Avi_7395 369188 - 369874 + | ABC transporter membrane spanning protein Avi_7396 369971 - 370864 + | Transcriptional regulator TERM 298 370861 - 370899 + T 100 -13.4 -4.13728 | opp_overlap 370865 370871 AGCCCTCAGCGAGCA GTAATACGAAGATTCATT GAA AATGACTCTTCGTATTCC TTTTGAAAATATCTC TERM 299 370895 - 370865 - T 81 -12.8 -3.22298 | opp_overlap 370861, overlap 370871 CTCAGCGAGCAGTAA TACGAAGATTCATT GAA AATGACTCTTCGTA TTCCTTTTGAAAATA Avi_7397 372187 - 371039 - | Selenocysteine lyase Avi_7398 373212 - 372196 - | ornithine cyclodeaminase Avi_7399 373498 - 374628 + | oxidoreductase TERM 300 374751 - 374770 + G 72 -5.6 -4.54821 | opp_overlap 374722 GGTCAGACCGAGCAG GTGCTGGC CAAG GCCAACGC TTTTCTCGTTAAGAT Avi_7400 374625 - 374975 + | hypothetical protein TERM 301 375210 - 375231 + F 100 -10.1 -4.94672 | ATGTCACGCCTCTTG GAACGGGGC AAGC GACCCGTTC TTTTTGGTCTTATTT TERM 302 375948 - 375961 + G 75 -9.5 -3.90291 | opp_overlap 375945 TCTGAGGATAAGGGC GCGCG CGAT CGCGC TTTCATTAAGGAGAT Avi_7402 375396 - 376295 + | Transcriptional regulator TERM 303 376346 - 376305 - f 100 -18.7 -3.16564 | opp_overlap 376305 376307 GCTTGATTGCATCAA TATGGCCCGCCCACGAGGG GTTT CCTTCGTGGGCGGCCCCTA TTGGCTCAGAGGAAG TERM 304 376305 - 376346 + F 100 -20.9 -3.05384 | opp_overlap 376305, overlap 376307 GCTTGATTGCATCAA TATGGCCCGCCCACGAGGG GTTT CCTTCGTGGGCGGCCCCTA TTGGCTCAGAGGAAG TERM 305 376307 - 376344 + F 100 -19.1 -3.08679 | opp_overlap 376305, overlap 376305 TTGATTGCATCAATA TGGCCCGCCCACGAGGG GTTT CCTTCGTGGGCGGCCCC TATTGGCTCAGAGGA Avi_7403 376370 - 377011 + | hypothetical protein TERM 306 377049 - 377091 + F 77 -8.9 -4.07568 | gap 2 CTGTTCGTATTCTAT TTTCGAATATCTC-AAT-CAT CTG ATGCATTTGAGATATTCGGAA TTTTGCAAGACGAGG TERM 307 377534 - 377544 + F 78 -5.4 -4.82901 | TATATATATTTATAT TCGA CAA TCGA TTTTTGTACGCACGA TERM 308 377721 - 377697 - g 83 -7.7 -4.70266 | AAGAGCACTCAAAAA CAGGGGACGCC ATT GGCGCAACCTG AACCCGGCCTCACAC Avi_7405 377643 - 378932 + | Acyl-CoA dehydrogenase Avi_7406 378983 - 379618 + | 4-hydroxyphenylacetate 3-monooxygenase reductase component TERM 309 379698 - 379734 + F 77 -11.7 -3.18264 | gap 1, opp_overlap 379697 379696, overlap 379700 TCACACTCTGAAAGC CG-TCACCGATCAGGG CGCGAC CCCTGATCGGTCATCG TTGATGAATGCAGGC TERM 310 379700 - 379731 + F 81 -13.1 -2.79098 | opp_overlap 379697 379696, overlap 379698 ACACTCTGAAAGCCG TCACCGATCAGGG CGCGAC CCCTGATCGGTCA TCGTTGATGAATGCA Avi_7407 379820 - 382147 + | ferrienterobactin-like protein TERM 311 382265 - 382306 + T 91 -9.4 -4.67943 | gap 1, opp_overlap 382265, overlap 382272 TCGCATTCGGAGAGA CCGCGTTTCGTCGTCCGGT TTACC GCCGGACGACGATTT-CGG TTTTGTGTCTTGCCC TERM 312 382272 - 382300 + T 100 -16.8 -3.98312 | opp_overlap 382265, overlap 382265 CGGAGAGACCGCGTT TCGTCGTCCGGT TTACC GCCGGACGACGA TTTCGGTTTTGTGTC Avi_7409 383233 - 382376 - | Transcriptional regulator TERM 313 383308 - 383325 + H 77 -6.9 -4.47551 | overlap 383310 CGCCCAAGAGCGGAC GGTGCCG ATAA CGGCAAC TTTTGTGGATTGGAT Avi_7410 383454 - 384209 + | arylmalonate decarboxylase TERM 314 385338 - 385356 + G 73 -12.4 -3.05384 | opp_overlap 385316, overlap 385332 385340 CGGCATGTCGCGGCA CGCCAGCG TTA CGCTGGTG TTGGGTCAGGAGGAC Avi_7411 384226 - 385377 + | Acetyl-CoA acetyltransferase TERM 315 386536 - 386513 - g 77 -12.4 -3.54129 | overlap 386515 CAGACGGTCGCCAAA TATCCGGCCC CTGC GGGCCGGATG GGCCGCCGTGCGCCA TERM 316 386534 - 386515 - g 87 -15 -3.34715 | overlap 386513 GACGGTCGCCAAATA TCCGGCCC CTGC GGGCCGGA TGGGCCGCCGTGCGC Avi_7413 385841 - 387226 + | ScoB Avi_7414 387340 - 387768 + | hypothetical protein TERM 317 387804 - 387825 + T 100 -17.3 -5.38958 | ACCGGGTCATTTGAA CCGCCGCTC GCAA GAGCGGCGG TTTTTCTTTGTGGAT TERM 318 388059 - 388103 + T 100 -18 -4.08651 | gap 1, opp_overlap 388049 388059 388067 AGCGACCTGCCCAAA CAGGAGAAGGCCGAC-CTGGC TTTC GCCACCGTCGACCTTCTCCTG TTGTTTCATTGCGAT TERM 319 388103 - 388059 - T 100 -20.2 -3.54543 | gap 1, opp_overlap 388059, overlap 388049 388067 AGCGACCTGCCCAAA CAGGAGAAGGCCGAC-CTGGC TTTC GCCACCGTCGACCTTCTCCTG TTGTTTCATTGCGAT Avi_7416 389435 - 388188 - | Permeases of the major facilitator superfamily Avi_7417 389768 - 390919 + | oxidoreductase Avi_7418 391027 - 391692 + | gamma-carboxymuconolactone decarboxylase subunit TERM 320 392169 - 392187 + G 78 -6.6 -4.58395 | overlap 392171 CCTCCCTGATGGTTT GTGTCGGT GAT GCCGACCC TTTTTCGCCGATGAG Avi_7419 391694 - 392398 + | hypothetical protein Avi_7421 392484 - 393329 + | oxidoreductase Avi_7422 393334 - 393894 + | hypothetical protein hpcE 393954 - 394808 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 321 394822 - 394812 - T 80 -5.4 -4.88736 | GAGCAGCTATAAAAA TCCT ATG AGGA CAATGATCGGATACG TERM 322 394885 - 394929 + T 74 -7.4 -4.02022 | gap 1, opp_overlap 394893, overlap 394888 394913 394921 AGGCTTATCTGTTTT CTATTATAGCGTTGTGCAC CATCGAGA GTGC-CAACGCTATAATGC TTTATAGTCGTTGCA TERM 323 394888 - 394926 + T 75 -11.3 -3.05238 | gap 1, opp_overlap 394893, overlap 394885 394913 394921 CTTATCTGTTTTCTA TTATAGCGTTGTGCAC CATCGAGA GTGC-CAACGCTATAA TGCTTTATAGTCGTT TERM 324 395036 - 394992 - T 90 -11.6 -3.94746 | CCAGATCCAATGAAA TTGAGGCCATTTAGCATC CAGATCGGT GACGCTGAACGGCCTCAA GAAGGCTGCCGATGG Avi_7425 396568 - 395057 - | monooxygenase FAD-binding Avi_7426 398033 - 396552 - | 2-methylcitrate dehydratase family protein Avi_7427 398288 - 398731 + | hypothetical protein Avi_7428 398827 - 399360 + | ring-cleavage extradiol dioxygenase TERM 325 399405 - 399461 + F 86 -12.4 -3.42658 | gap 2, overlap 399392 399452 TCGTGCGCGCGTTGA CGAGGC--ACTGGATTCTGTCCGGCTCA GAT TGAGCCGGACAGAGTCTAGGAAGCCGGG TTCCATTTTATCCTC Avi_7430 399505 - 400440 + | fumarylacetoacetate (FAA) hydrolase family protein Avi_7431 400596 - 401369 + | Transcriptional regulator Avi_7432 401388 - 401936 + | hypothetical protein Avi_7433 403052 - 401961 - | ABC transporter membrane spanning protein (branched chain amino acid) TERM 326 402557 - 402592 + g 77 -8 -4.27316 | opp_overlap 402543 402542 TCTCGCGGGTCGCCT CGCGTGGCAGCGACGC CCCG GTGCCGCCGCCCAGCG TTTTCCATTGGGCAA Avi_7434 403926 - 403063 - | ABC transporter membrane spanning protein (branched chain amino acid) TERM 327 403358 - 403335 - G 73 -11.1 -3.41051 | overlap 403316 CGATTGTGACCACAA CCATGGCAA GCCCTG TTGCCATGG CAAAGATACGGTGCG Avi_7436 404638 - 403913 - | ABC transporter TERM 328 404390 - 404368 - G 71 -6.9 -4.14739 | TGAGCGAGGGGAAAA GCTTGCGCC CTTCC GGCACCAGC GCAATGCCACGGGCC Avi_7437 405354 - 404635 - | ABC transporter nucleotide binding/ATPase protein TERM 329 405405 - 405375 - R 88 -10.5 -4.07568 | gap 2, opp_overlap 405375, overlap 405379 GGCTCCTGTTGAAAA CGCACCCGCTCCGCA GTG TG-GGAGCGGG-ACG TTTGCGCTCACGCGA TERM 330 405402 - 405379 - R 81 -13.2 -2.74605 | gap 1, opp_overlap 405375, overlap 405375 CCTGTTGAAAACGCA CCCGCTCCGCA GTG TG-GGAGCGGG ACGTTTGCGCTCACG Avi_7438 406807 - 405413 - | ABC transporter substrate-binding protein TERM 331 406144 - 406154 + g 74 -2.4 -4.87665 | opp_overlap 406144 406145 CATCATTGGGAAACA GGCC GCC GACC TTTTTGTCGGTCGCA TERM 332 406998 - 407020 + r 85 -13.5 -3.21912 | GAACTGGCATTCGAA TGGCACCGA TCATC TCGGTGCCA TTGCTGGCTTAGAGC TERM 333 407049 - 407084 + r 70 -9.7 -3.17212 | gap 1, opp_overlap 407044 407043 407057 GCGCCAAAATCTGCC GCAGCACAC-GGCGCA AGTCG TCCGCCGGTGTGCCGC TTGCTGCCGTGCTGC Avi_7439 408786 - 407029 - | 2,4-dichlorophenol hydroxylase TERM 334 408578 - 408543 - G 81 -8.4 -4.3739 | gap 1 GACTTTCGCAGAAAA TGTTTTCG-CCCATCAG TTC CTGATGCGTCGCAAACA AGTAGGCCTCGTCCT macA 409888 - 408815 - | maleylacetate reductase TERM 335 409525 - 409539 + g 72 -8.6 -3.86897 | opp_overlap 409538 CACTGCCCGCATAGG TCGTTG GAA CAACGA TTTGTGGCAGATCAC TERM 336 410279 - 410293 + G 75 -5.6 -4.67982 | overlap 410281 CGGGCCGATTGCGTC TGGGCG GAA CGCCAA TTTTCTTCGATGGCG Avi_7441 409990 - 410940 + | transcriptional regulator LysR family Avi_7442 411283 - 410951 - | hypothetical protein Avi_7443 412133 - 411297 - | dioxygenase TERM 337 412402 - 412413 + r 76 -3.6 -4.96845 | overlap 412392 GTGATCCAAGTGTTT TGGC TTCT GCCG TTTGTTTGTTTTTGT TERM 338 412519 - 412505 - R 79 -4.2 -5.09225 | ACTTCATCGAAAAAA TGTTGC CAA GCATCA AAGACTGGAGGCGCA Avi_7446 416144 - 413058 - | alpha-D-mannosidase TERM 339 414185 - 414208 + g 79 -5.4 -4.83615 | gap 1, overlap 414174 414186 CGGCGGGCAGGGGGC TTGCGCTTTCA ATC TGAAA-CGCAG TTTTTCTGGAGCCTG TERM 340 415104 - 415089 - G 72 -4.6 -4.58685 | opp_overlap 415089 415094 415095 415097, overlap 415091 AAACTGCCGCAAAAA GGCCTC TGCC GAGGGC ATGTTGGTATCACAC TERM 341 415189 - 415165 - G 74 -13 -2.87132 | opp_overlap 415162 415159 CGGCCTTCCGAGACA CGCTGTTTGA TCTCT TCAAACAGCG CCGGGTCTTCTTGCT Avi_7450 416575 - 417717 + | extracellular solute-binding protein TERM 342 417764 - 417790 + G 83 -13.7 -3.52896 | opp_overlap 417754, overlap 417749 AAGGATCGCGCTGGA CCGGATTGGCC TTTGT GGCCATTCCGG TTCTGTCCATCGTGA potB 417721 - 418590 + | ABC transporter membrane spanning protein TERM 343 418669 - 418680 + G 83 -5.8 -4.9725 | TCTTTATCGTTCTGC CCGT GCTC ACGG TTTTTCTCTGGGCCT TERM 344 418766 - 418791 + G 83 -13.9 -3.58269 | overlap 418786 CTGGTCTGCGGTCTT GGCCCGCCCGG ATGT CTGGGCGGCCC TTTGGACGTCGGTTG Avi_7452 418593 - 419408 + | ABC transporter membrane spanning protein afuC 419448 - 420491 + | ABC transporter nucleotide binding/ATPase protein (iron) Avi_7454 421757 - 420492 - | transcriptional regulator ROK family Avi_7455 422682 - 421804 - | hypothetical protein Avi_7457 422937 - 424013 + | hypothetical protein Avi_7458 424789 - 424178 - | hypothetical protein Avi_7459 425244 - 424795 - | transcriptional regulator TERM 345 425188 - 425160 - G 74 -11.1 -3.57144 | CCGCCGACGCGGAAA GCTCGACGATATT GCC AATATCGGCAAGC GAGCGGCGGGCGTCT Avi_7461 425609 - 425400 - | hypothetical protein TERM 346 427685 - 427698 + r 72 -6.7 -4.25104 | opp_overlap 427674 TACATGAACTACCTC CTTGG TGGT CCAAG TTTTCGTCCGCACCC Avi_7466 429228 - 427750 - | hypothetical protein TERM 347 427946 - 427972 + g 71 -8.1 -4.06502 | gap 2, opp_overlap 427944 427945 427942 GTGAGCGAAAACAGC GC-GATTG-CGCC CAT GGCGACAATCAGC TTTGGTTTCACCATC TERM 348 428734 - 428716 - G 78 -3 -5.03314 | overlap 428705 428718 CCGACGTTGAAAAAA CGGCGC GACACGT GCGACG ATAAAGTGGTCAGGC Avi_7467 430457 - 429225 - | hypothetical protein TERM 349 429301 - 429332 + g 90 -8 -5.00616 | gap 1 ATCAAGCGATGCGGC GTCCAGCC-CTCAGC GGT GATGAACGGCTGGAC TTTTTTGAGGGACAC Avi_7470 430710 - 431300 + | transposase TERM 350 431511 - 431497 - f 81 -10 -3.90112 | opp_overlap 431481 GCCTTGTCAATCAAA GCGTGA TAT TCACGC CGAAGCAACGATCGC TERM 351 432272 - 432294 + G 71 -6.9 -4.11216 | opp_overlap 432256 432286 CGGCAAGGCGGAGAA CTGGCCGGG CAACA TCTGGCCGG TTTTGGCCATAGCCA Avi_7472 431762 - 432781 + | transcriptional regulator LacI family Avi_7473 432816 - 433775 + | ABC transporter nucleotide binding/ATPase protein Avi_7475 433772 - 434587 + | ABC transporter nucleotide binding/ATPase protein Avi_7476 434584 - 435588 + | ABC transporter membrane spanning protein (sugar) Avi_7477 435592 - 436659 + | resiniferatoxin-binding phosphotriesterase-related protein TERM 352 436719 - 436703 - g 74 -2.2 -5.02323 | TCATGACAAAGAAAA TTCTCC TCGTG GGTGAA AGCTGGGTCAGCTCC Avi_7478 436690 - 437460 + | hypothetical protein rbsK 438362 - 437466 - | ribokinase TERM 353 437773 - 437785 + g 75 -10.5 -3.63805 | CGCAAGCATTGGGTG GCGGC TTC GCCGC TTTCACCTGTCAGCT Avi_7481 438409 - 439251 + | hypothetical protein amaB 439257 - 440552 + | N-carbamoyl-beta-alanine amidohydrolase Avi_7483 443673 - 440590 - | Acr family transporter Avi_7484 444725 - 443670 - | HlyD family secretion protein nodT 446260 - 444788 - | nodulation protein T precursor TERM 354 445335 - 445348 + g 72 -4.5 -4.57341 | GCGACATCGGCAAGC GAGGC GGCG GCTTC TTTTTCCAGCGCATT TERM 355 445422 - 445465 + g 74 -8.2 -4.23674 | overlap 445417 ACGGACAGTTTCGCA GGGCGCGGTATTTTCGACGA GCTT TTATTGAGAATATCGCGCAC TTTGTCTTCATCAAC chvI 446416 - 447102 + | two component response regulator Avi_7490 447102 - 448373 + | Signal transduction histidine kinase TERM 356 448849 - 448839 - T 72 -8.2 -3.7941 | overlap 448810 CATGTTGCAGAAGAA CCGC TTG GCGG CATCAAGATCGCGCT gstR 450397 - 449507 - | transcriptional regulator LysR family Avi_7498 451267 - 450527 - | hypothetical protein TERM 357 451547 - 451533 - R 100 -12.8 -4.42062 | opp_overlap 451545 CATCTGCCAAATAAA GCGGCG CTG CGCCGC CGTTCAGATAAAGGC Avi_7500 452448 - 451681 - | transposase pecM 453727 - 452804 - | regulator protein pecM orfB 455295 - 454438 - | IS3 family transposase TERM 358 454937 - 454960 + g 78 -9.6 -4.05788 | gap 1, overlap 454946 TCGTTCGAACGGGTG GCTGCGGTGCG GTC CG-ATCGCAGC TTTGCTTTGACGCGC Avi_7505 455677 - 455324 - | hypothetical protein nocM 456381 - 455701 - | ABC transporter membrane spanning protein (nopaline) nocQ 457096 - 456383 - | ABC transporter membrane spanning protein (nopaline) Avi_7508 457975 - 457157 - | ABC transporter substrate binding protein (amino acid) nocP 458790 - 458014 - | ABC transporter nucleotide binding/ATPase protein (nopaline) bioA 460212 - 458809 - | adenosylmethionine-8-amino-7-oxononanoate transaminase Avi_7513 460437 - 460913 + | transcriptional regulator AsnC family Avi_7514 461338 - 461610 + | transposase TERM 359 461873 - 461858 - f 77 -8.2 -4.08945 | overlap 461847 461844 461861 ATGACTGCTTGAAAA GCAGCG GCTG CGCCGC CTTGCAACCAATGCA TERM 360 461873 - 461861 - f 72 -10.5 -3.08211 | overlap 461858 461844 ACTGCTTGAAAAGCA GCGGC TGC GCCGC CTTGCAACCAATGCA Avi_7515 462221 - 463141 + | carboxyphosphonoenolpyruvate phosphonomutase (CPEP Phosphonomutase) TERM 361 464511 - 464483 - g 84 -13.2 -3.78034 | overlap 464500 CAGTGATACCAACAA GATCGTCCTGCA AATCA TGCAGGCCGATC TGGCCAAAGTCGGCA Avi_7516 463236 - 464933 + | ABC transporter substrate binding protein (oligopeptide) dppB 464930 - 465883 + | ABC transporter membrane spanning protein (dipeptide) dppC 465891 - 466778 + | ABC transporter membrane spanning protein (dipeptide) Avi_7520 466778 - 467803 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) moaD 467800 - 468792 + | ABC transporter nucleotide binding/ATPase protein Avi_7524 468870 - 470054 + | aromatic-amino-acid transaminase nocR 471931 - 470060 - | transcriptional regulator LysR family TERM 362 471148 - 471132 - G 71 -10.1 -3.5241 | overlap 471130 GATTCGCGATAAATA CGGCTGA TTC CCAGCCG ATTGGCCACCATGCT TERM 363 473408 - 473389 - g 83 -13.6 -3.57561 | opp_overlap 473384 473383 473381 GTTGAACTGGCGAAA TCCACCCG TATG CGGGTGGA TCGGGATATTCTGAT Avi_7527 472246 - 473613 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 364 474107 - 474087 - g 78 -11.2 -3.67188 | opp_overlap 474075, overlap 474085 ACCCAGCCCAAAACA CTGGCTGA TCTTG TCAGCCAG ACCGTTGGCCGAGCA Avi_7528 473610 - 474185 + | 3-polyprenyl-4-hydroxybenzoate decarboxylase TERM 365 474196 - 474224 + F 91 -9.6 -4.62471 | opp_overlap 474196 CTTGATCCATTGAAA CATTGGCCCCAA CGCTT TTGGGGCAGATG TTTTTCGCCGTTCAA TERM 366 474330 - 474314 - g 70 -2.2 -4.74453 | overlap 474315 TAATATATTGAAAAA TTGCGA AAATA TCGCAT CCAGATCTGTGCGCG TERM 367 474705 - 474729 + G 72 -9.9 -3.66178 | GTAAAATTCAACTGG GAGCGTCAGGC CAT GCCCGACACTC TTTCACCTTCGCAAG dppA 474294 - 475919 + | ABC transporter substrate binding protein (dipeptide) TERM 368 475962 - 475932 - f 72 -9.8 -3.28907 | gap 1, opp_overlap 475932 475933, overlap 475926 475930 475934 TAAGAAAATCCAATA GATCGGCGAACCG CAGGTT CGGTTCGCCAA-C GTTCTCCTCAAGGTG TERM 369 475961 - 475934 - f 85 -13.5 -3.19007 | opp_overlap 475933 475932, overlap 475926 475932 475930 AGAAAATCCAATAGA TCGGCGAACCG CAGGTT CGGTTCGCCAA CGTTCTCCTCAAGGT TERM 370 476308 - 476296 - gf 84 -10.5 -3.74693 | opp_overlap 476297 TCGCAGGCTAGCAAA GGCCG GAG CGGCC GCCATTCTGCTGGAA TERM 371 476764 - 476786 + GF 73 -3.4 -4.77036 | overlap 476727 AGGCTCGATGTACGG CATGATGG ATTTTGG CCGTCGTG TTTTTGCTGATCGCA Avi_7530 475985 - 476917 + | carboxyphosphonoenolpyruvate phosphonomutase TERM 372 477762 - 477783 + GF 70 -10.1 -3.17238 | gap 1, overlap 477768 GATTTCATTCAGGTG GC-GCGGGCC AAG GGCCTGCCGC TTGGCTATATCCTGT dppB 476889 - 478061 + | ABC transporter membrane spanning protein (dipeptide) TERM 373 478159 - 478195 + G 78 -9.3 -4.00038 | overlap 478153 GGCCAGATTGCGGCT GCCGGGTGCAAGCCCCT TTG AGCTGGTTGCGCTCGGC TTTCTGATACTGCTG dppC 478058 - 478978 + | ABC transporter membrane spanning protein (dipeptide) Avi_7533 478980 - 479993 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 374 480393 - 480358 - g 70 -11.8 -2.71712 | opp_overlap 480353, overlap 480357 CTGGGCGTTGCAAAG CCTGAGCGCGACAGGC GCGT GCGTGCGGCGCTCAAG GATGTGGGTTTTGAT Avi_7536 479986 - 480963 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 375 481031 - 481051 + G 72 -4.6 -4.7033 | gap 1, overlap 481031 481032 ATGTGCAATCTCTAT C-GCGCGCC GAAC GTCGCGCAG TTTTGTATTCGCTTG Avi_7537 480974 - 481495 + | hypothetical protein TERM 376 482065 - 482052 - g 74 -6.7 -4.48987 | TGTTCACAACGAAAA TGACG AATG CGTCA AGGTGTGGAGCGAAG Avi_7538 481492 - 482868 + | allantoinase protein amaB 482873 - 484132 + | N-carbamoyl-beta-alanine amidohydrolase hutH 484241 - 485854 + | histidine ammonia-lyase TERM 377 485855 - 485907 + F 89 -13.4 -3.39668 | opp_overlap 485860 485869 GGCCCTCTTCGCTGA GACGATCTGAACCATGGGCGAGGC ATTTA GCCTCGCTTACGGTTCAGTTGGCC TTGTAACGTTTACCG TERM 378 485902 - 485860 - f 76 -12.7 -2.62184 | opp_overlap 485855, overlap 485869 TCTTCGCTGAGACGA TCTGAACCATGGGCGAGGC ATTTA GCCTCGCTTACGGTTCAGT TGGCCTTGTAACGTT Avi_7541 485953 - 486312 + | transposase Avi_7543 488442 - 486526 - | hypothetical protein Avi_7544 489587 - 488445 - | von Willebrand factor type A (vWA) domain-containing protein aceF 493573 - 489584 - | dihydrolipoamide acetyltransferase TERM 379 490584 - 490608 + g 90 -7.9 -5.00884 | gap 1, overlap 490600 TCTTCCGGCGTCAGC TCGCGG-GCT TCGGCC AGCACCGCGA TTTTTTCACGGGCCT TERM 380 490638 - 490648 + g 70 -4 -4.58395 | overlap 490612 TTTTCCTGCAGGCCC TTGA ACT TCAA TTTTTCAGCGATGCC TERM 381 492818 - 492831 + g 81 -3.8 -5.14563 | opp_overlap 492818 TCTTAGGCACAACAG GTCG ACCGGG CGAC TTTTTTCATCGCCCC Avi_7548 495890 - 493596 - | hypothetical protein TERM 382 493684 - 493645 - G 88 -14.2 -3.5393 | gap 1, opp_overlap 493676 493676 ACCACTGCTTCCAAA GCCAGCGCCGCCGC-CTGA GTC TCTGTGCTGCTGCGCTGGC GCATCCATTGCATGG TERM 383 494757 - 494790 + g 74 -11.6 -3.62275 | gap 1, overlap 494759 494781 GTCGAGCAGTGGTGG CCGGCGGGTGCCGGC AGCAA GCCGGC-CGCGCCTG TTTCCGGTCATGGCT TERM 384 494759 - 494788 + g 79 -12.8 -3.39018 | gap 1, overlap 494757 494781 CGAGCAGTGGTGGCC GGCGGGTGCCGGC AGCAA GCCGGC-CGCGCC TGTTTCCGGTCATGG Avi_7549 496989 - 495898 - | moxR-like ATPase TERM 385 495954 - 495988 + g 75 -5.6 -4.66953 | ATGCTGCACCGGGCC GCTTCGACGCCTTCTG CTC CAGATAGCGTACAAGC TTTTTCAGGTCTTCC purA 498467 - 497289 - | adenylosuccinate synthetase TERM 386 498309 - 498255 - G 71 -7.1 -4.24413 | gap 1, overlap 498256 498304 GTTATGAATAAAGAA GCGCGA-CATGTAGGTAGTGGCACCC CGAA GGGCACCGCTGCCTACATGATGGAAC ACATGGCGTGTGCCA Avi_7551 499396 - 498464 - | hypothetical protein TERM 387 499157 - 499142 - G 76 -3.2 -5.0133 | gap 1, overlap 499144 GATGCTGGTAAAAAA CG-CGGG AAG CCCATCG CGAACCATATAGTCC TERM 388 499319 - 499329 + g 74 -8.2 -4.1899 | opp_overlap 499319 499318 499316 GCGACTGGAAAACAC CGCG TCC CGCG TTTTGCCTGCCGTAG Avi_7552 500414 - 499389 - | hypothetical protein TERM 389 499934 - 499944 + g 74 -8.2 -4.18018 | opp_overlap 499934 CACTCAGTCGGACAA GCCC AGC GGGC TTTTCCATCACCAGA TERM 390 500464 - 500494 + H 81 -6.2 -4.76041 | overlap 500466 ACGATATGCGCCTTC TGGACTTAGGCG TCAATAC CGTCTAAGTCTG TTTTTGCTGGCTATC TERM 391 500466 - 500492 + H 74 -8.8 -3.99327 | overlap 500464 GATATGCGCCTTCTG GACTTAGGCG TCAATAC CGTCTAAGTC TGTTTTTGCTGGCTA Avi_7553 500590 - 501249 + | hypothetical protein TERM 392 501797 - 501766 - T 100 -19.6 -3.65714 | opp_overlap 501773 501788, overlap 501754 AAACGAGACTTGAAA TCACGAAGGCCCGA AATT TCAGGCCTTCGTGA TAAGGCTATATCGGG Avi_7554 502559 - 501813 - | hypothetical protein vgrG 503466 - 505427 + | vgrG protein TERM 393 505675 - 505664 - g 100 -2.2 -6.11243 | AGTGAAGAAAAAAAA GAAG ATGT CTCC AGTAATTTCAGTCCA Avi_7558 505592 - 506602 + | hypothetical protein Avi_7559 506592 - 507974 + | phospholipase A1 Avi_7560 507987 - 509033 + | hypothetical protein Avi_7561 509109 - 509534 + | hypothetical protein Avi_7563 510786 - 510082 - | hypothetical protein Avi_7564 511328 - 510783 - | ECF family sigma factor Avi_7565 511533 - 512321 + | hypothetical protein TERM 394 512326 - 512362 + F 100 -18.8 -3.28924 | opp_overlap 512329 512335, overlap 512329 512335 CGGCGACCTGATACT GAAGAGCAAGGCGGGC GATGA GCCTGCCTTGCTCGTC TTGTGACGCGGCGTC TERM 395 512359 - 512329 - f 100 -16.9 -3.12999 | opp_overlap 512329 512326 512335, overlap 512335 CGACCTGATACTGAA GAGCAAGGCGGGC GATGA GCCTGCCTTGCTC GTCTTGTGACGCGGC TERM 396 512329 - 512359 + F 100 -19.1 -2.52623 | opp_overlap 512329 512335, overlap 512326 512335 CGACCTGATACTGAA GAGCAAGGCGGGC GATGA GCCTGCCTTGCTC GTCTTGTGACGCGGC tnp 512660 - 513391 + | transposase Avi_7569 514610 - 513930 - | hypothetical protein Avi_7570 515998 - 514622 - | glucose 6-phosphate dehydrogenase TERM 397 515036 - 515012 - G 71 -10.7 -3.53012 | opp_overlap 515025, overlap 514996 514997 GGGCGGGCGGCGAAA CCGCACGACAA CTT CTGTCGCACGG ACCGGCAGGTGCTTG TERM 398 515572 - 515582 + g 71 -8.2 -4.09685 | CGGAGGCAAGATCCC GCCC GAA GGGC TTTTCCACCATCAGC Avi_7571 517008 - 515995 - | 6-phosphogluconate dehydrogenase TERM 399 516875 - 516854 - G 77 -7.9 -4.37658 | overlap 516855 AATTTGGCGAGAAAA TCGGCGTAG CTCG CCGCGCCGA CAGCGCCTTCGGCCT Avi_7572 519432 - 517027 - | glucan 1,4-alpha-glucosidase Avi_7573 521025 - 519622 - | transcriptional regulator GntR family Avi_7575 521364 - 521846 + | hypothetical protein TERM 400 521880 - 521897 + F 85 -14.1 -2.71144 | TCAGCGCGCCCGGAA GGCGGGG CCAG CCCCGCC TCCTTCACCCCAATC Avi_7576 521926 - 522969 + | amidohydrolase Avi_7577 523043 - 524014 + | Biotin synthase-related enzyme TERM 401 524117 - 524134 + G 75 -5.5 -4.56597 | TTCGTCGGGATGTCT TCTGCCG CGAA CAGCAGA TTTTTGAAAGCGACG Avi_7578 524011 - 524553 + | GCN5 family N-acetyltransferase Avi_7579 524556 - 525542 + | selenophosphate synthetase-related protein Avi_7580 525563 - 526696 + | WbdA; mannosyl transferase A Avi_7582 526698 - 526976 + | hypothetical protein TERM 402 527281 - 527269 - g 72 -4.7 -4.56597 | opp_overlap 527269 TCGCTTCGTCAAAAA GGTCG ATG CGCCC GTTTTAGAAGGCACC Avi_7583 526988 - 528259 + | flavin-containing monooxygenase Avi_7584 528320 - 529129 + | yype IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV) B subunit TERM 403 529977 - 529966 - g 71 -7.2 -4.19371 | opp_overlap 529974 CAAACCGTCAACAAA GGCC TCGA GGCC GTCGGCATTTCCAGC Avi_7585 529444 - 530520 + | Catalase TERM 404 530553 - 530570 + G 81 -3.3 -5.32699 | overlap 530552 ACCATTTGGAGGCAT GGCTGTT TTAA AGCCGCC TTTTTTCCTCTTTAA TERM 405 530616 - 530603 - g 79 -5.2 -4.72007 | TCCCATCAAAAGAAA GGCC CGCCAT GGCC GACCCTATCGAGAAC fdhF 530551 - 532887 + | formate dehydrogenase H alpha subunit TERM 406 532934 - 532884 - T 70 -10.6 -2.78798 | overlap 532883 AGTCCGGATCGAAAC CTAGACTTTGCCAGGGAAAACCGG GTT CCACTTTTCCCTGATAAACTCTAA CGAACCAGCATCGAA Avi_7587 533443 - 532931 - | acetyltransferase Avi_7588 534329 - 533454 - | hypothetical protein Avi_7589 535175 - 534339 - | hypothetical protein TERM 407 535118 - 535131 + g 71 -8.1 -4.07885 | CCGCCTTCCAGTTTT CGACG AATA CGTCG TTTTGAGAGCCGATG TERM 408 535229 - 535275 + r 95 -13.7 -3.54424 | gap 1, overlap 535233 535239 AAGGCGCGGAGCACC GCAGGGCGGGGTCGGGCGCACC AAGG GGTGCGCCCGACTT-GCATTAC TTTGCCGCCATCACA TERM 409 535233 - 535271 + r 100 -15.3 -3.51411 | gap 1, overlap 535229 535239 CGCGGAGCACCGCAG GGCGGGGTCGGGCGCACC AAGG GGTGCGCCCGACTT-GCA TTACTTTGCCGCCAT TERM 410 535239 - 535266 + r 100 -22.8 -3.26596 | overlap 535233 535229 GCACCGCAGGGCGGG GTCGGGCGCACC AAGG GGTGCGCCCGAC TTGCATTACTTTGCC TERM 411 535291 - 535309 + r 77 -5.9 -4.62069 | opp_overlap 535291, overlap 535292 TTTGCCGCCATCACA CCCGCGA CATGC TCGCGGA TTTTTGGCATGGCAG Avi_7590 536615 - 535272 - | ABC transporter substrate binding protein (sugar) TERM 412 536571 - 536614 + g 83 -13.3 -3.5393 | gap 2, overlap 536578 AAGGTGGAGTGGTCT TGACTTTCGGACCTGCCCGGT GGCC GCCGGGCAGGTCCGTA--TCA TTTGACGCCGGTCAT TERM 413 536578 - 536609 + g 100 -23.8 -3.00525 | overlap 536571 AGTGGTCTTGACTTT CGGACCTGCCCGGT GGCC GCCGGGCAGGTCCG TATCATTTGACGCCG Avi_7591 537439 - 536612 - | ABC transporter membrane spanning protein Avi_7592 538359 - 537439 - | ABC transporter TERM 414 537926 - 537878 - G 93 -5.2 -5.42259 | gap 1 CCATCGGCAAAAAAA TCGAG-AGCCGGTAAGCCCAATG CGTC CAACAGGCTTGCCAGCGGCCCGA TATGGCCATTGAGCA Avi_7593 539536 - 538343 - | ABC transporter nucleotide binding/ATPase protein Avi_7595 539865 - 540536 + | transcriptional regulator TetR family TERM 415 540643 - 540590 - f 78 -7.6 -4.41494 | gap 1, opp_overlap 540592 540595, overlap 540591 540592 540594 GACTGCGAAGCAAAA TTGAGCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGG-TCTT TGTTTTACGCATTTG TERM 416 540642 - 540591 - f 74 -11.1 -3.24414 | gap 1, opp_overlap 540592 540595, overlap 540590 540592 540594 ACTGCGAAGCAAAAT TGAGCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGG-TCT TTGTTTTACGCATTT TERM 417 540592 - 540641 + F 100 -15.3 -4.66535 | gap 1, opp_overlap 540592 540591 540590 540594, overlap 540595 CTGCGAAGCAAAATT GAGCCTAGATCATTTCCGCGTTTT GTT GAATCGCTGAAATGATCTAGG-TC TTTGTTTTACGCATT TERM 418 540641 - 540592 - f 89 -14.6 -2.54166 | gap 1, opp_overlap 540592 540595, overlap 540591 540590 540594 CTGCGAAGCAAAATT GAGCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGG-TC TTTGTTTTACGCATT TERM 419 540640 - 540594 - f 85 -13.9 -2.80479 | opp_overlap 540592 540595, overlap 540592 540591 540590 GCGAAGCAAAATTGA GCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGGT CTTTGTTTTACGCAT TERM 420 540595 - 540639 + F 100 -18.1 -3.93868 | opp_overlap 540594 540592 540591 540590, overlap 540592 CGAAGCAAAATTGAG CCTAGATCATTTCCGCGTTTT GTT GAATCGCTGAAATGATCTAGG TCTTTGTTTTACGCA prxC 540758 - 541576 + | non-heme chloroperoxidase Avi_7599 542314 - 541652 - | hypothetical protein pepQ 543740 - 542316 - | proline dipeptidase Avi_7601 544590 - 543769 - | ABC transporter membrane spanning protein Avi_7602 545410 - 544583 - | ABC transporter membrane spanning protein TERM 421 545441 - 545468 + r 72 -8.5 -3.71848 | gap 1, opp_overlap 545444, overlap 545444 GGCGACGAGAGCATC GAACTG-GCGGA TCCAT TCCGCACGGTTC TTGTTGATCGCCGCC Avi_7603 546460 - 545420 - | ABC transporter substrate binding protein Avi_7604 547722 - 546481 - | ABC transporter nucleotide binding/ATPase protein TERM 422 547087 - 547064 - G 75 -10.2 -3.7108 | ACCTGCAGATCGAAA CGAAGCGCCC TGTC GAGCGCCCCG AACGGTTCATCGAGC Avi_7606 548168 - 549157 + | ABC transporter substrate binding protein (amino acid) Avi_7608 549161 - 550033 + | ABC transporter membrane spanning protein (amino acid) TERM 423 550034 - 550013 - f 88 -10.9 -4.03234 | gap 1, overlap 550015 GCCGGTGCACAGAAA GATCAGCCGC GAC GCGGCTGA-C GCACTGGCCGCTCGA TERM 424 550033 - 550015 - f 100 -14.6 -3.61232 | overlap 550013 CGGTGCACAGAAAGA TCAGCCGC GAC GCGGCTGA CGCACTGGCCGCTCG TERM 425 550575 - 550555 - g 71 -8.1 -4.08692 | opp_overlap 550556 550562 GAAGGTGCTGCAAAA GCTGGCGCC CGT GGCGCGTGC CAATGGTGTTCACCT Avi_7610 550112 - 551242 + | hypothetical protein TERM 426 551349 - 551398 + F 74 -8.3 -3.87149 | gap 4, opp_overlap 551357 AAGATCTGGATTTTG GTATTACAGCG-CC---GTGCGTTT TATA AAACGCACAAAGGACGCTGTAATAC TTTAAATTTAATGCA TERM 427 551421 - 551448 + F 72 -10 -3.32844 | opp_overlap 551418 551417, overlap 551422 TTAATGCATAATTTT CTCCTTAAATCG ATTC CGATTTAAGGAA TTATGCAGTAAGCGA TERM 428 551422 - 551447 + F 81 -13.5 -2.59564 | opp_overlap 551418 551417, overlap 551421 TAATGCATAATTTTC TCCTTAAATCG ATTC CGATTTAAGGA ATTATGCAGTAAGCG Avi_7611 551525 - 552277 + | transcriptional regulator GntR family Avi_7612 553261 - 552863 - | nikR protein TERM 429 553291 - 553301 + H 95 -6.8 -5.27923 | overlap 553283 TTGATGCTGATGTAT GGTG TAT CACC TTTTTTATCCGCTTC TERM 430 554927 - 554915 - g 79 -6.9 -4.56597 | overlap 554919 TGCCGTTGCCAAAAA GGAGC TTG GCCCC ATTCCGTTTGGGGCG nikA 553410 - 554990 + | nickel ABC transporter periplasmic nickel-binding protein nikB 554994 - 555938 + | nickel ABC transporter permease subunit NikB nikC 555935 - 556810 + | nickel ABC transporter permease subunit NikC nikD 556807 - 557595 + | nickel import ATP-binding protein NikD nikE 557592 - 558386 + | nickel import ATP-binding protein NikE Avi_7619 558560 - 558955 + | hypothetical protein fnrN 559070 - 559768 + | transcriptional activator Crp family Avi_7622 559787 - 561076 + | ABC transporter substrate binding protein (iron) Avi_7623 561073 - 562137 + | ABC transporter membrane spanning protein (iron) Avi_7625 562134 - 562919 + | ABC transporter Avi_7626 562916 - 563839 + | hypothetical protein sco1 563836 - 564495 + | electron transport protein TERM 431 564588 - 564600 + G 78 -6.2 -4.63527 | ACGCCACCCCCCTCA CCGG ATGGA CCGG TTTTTGCCATGCTGG TERM 432 564647 - 564660 + G 74 -8.1 -4.11216 | CCTGCTGGATCTGCT CGGTC CGAT GACCG TTTTCAACATCACCA Avi_7628 564492 - 565277 + | intracellular protease/amidase moaA 566639 - 565611 - | molybdenum cofactor biosynthesis protein A Avi_7630 567988 - 566633 - | hypothetical protein TERM 433 567018 - 567004 - G 76 -12.8 -3.12351 | overlap 566980 CCTCGTCATAGGCAA CGCCCG GAA CGGGCG CAGACCGTCTGCCGA fdxA 568290 - 567985 - | ferredoxin Avi_7633 570489 - 568363 - | reductase Avi_7634 570675 - 571589 + | transcriptional regulator AraC family TERM 434 572081 - 572062 - f 72 -4.3 -4.62069 | opp_overlap 572062, overlap 572064 TTGCTATCCCAAAAA TCCGCTT CCAGAT AAGCGAA TTTGGCGCATTTCTT Avi_7635 572212 - 573078 + | AraC-type DNA-binding domain-containing protein TERM 435 573122 - 573090 - T 100 -16.3 -3.67878 | opp_overlap 573082 573111, overlap 573091 ATGACCGCAACAGAA CCGCAGCTCTGCCGC TGT ACGGCAAAGCTGCGC TAGGCTTGATTATCG TERM 436 573121 - 573091 - T 100 -19.8 -2.80245 | opp_overlap 573082 573111, overlap 573090 TGACCGCAACAGAAC CGCAGCTCTGCCGC TGT ACGGCAAAGCTGCG CTAGGCTTGATTATC Avi_7637 574389 - 573139 - | Acyl-CoA dehydrogenase TERM 437 573618 - 573629 + g 70 -4.4 -4.43477 | opp_overlap 573618 CGGTCCAGGCGAAAT TCGT GGAA ACGA TTTTGATTCCGTCGC TERM 438 576846 - 576877 + G 83 -13.8 -3.33696 | gap 1 AAGGTTATATCTGTT CTCCGCCAC-TCCGA GAG TCAGACGTGGCGGAG TTCATTGCGCGAACG Avi_7641 574970 - 576937 + | hypothetical protein Avi_7643 578740 - 577013 - | sensory methylation accepting chemotaxis protein TERM 439 579736 - 579748 + G 71 -10.5 -3.53343 | TTTTGGTCAGATCTG GGCCG ATC CGGCC TTTCCCAAAACCCTT Avi_7645 579230 - 580588 + | hypothetical protein TERM 440 580855 - 580833 - g 71 -10.5 -3.53563 | opp_overlap 580833, overlap 580850 ACAGCCTTCGCCAAA CGCTCGTCG ACATA CGACGGGCG TTTGGCCCCTATCAA TERM 441 580833 - 580855 + G 81 -12.7 -3.56643 | opp_overlap 580833 580850 ACAGCCTTCGCCAAA CGCTCGTCG ACATA CGACGGGCG TTTGGCCCCTATCAA Avi_7646 580634 - 582223 + | TPR repeat-containing protein TERM 442 582573 - 582523 - f 83 -5.3 -5.10461 | gap 1, opp_overlap 582523, overlap 582527 TTTACTGAATAAAAA TGCAGCCTGGATGGGGCAAGATCG GTGC CGGTCATGCCCCATCCT-GCAAAA ATTTTTCATTTAAAA TERM 443 582569 - 582527 - f 78 -12.7 -2.92714 | gap 1, opp_overlap 582523, overlap 582523 CTGAATAAAAATGCA GCCTGGATGGGGCAAGATCG GTGC CGGTCATGCCCCATCCT-GC AAAAATTTTTCATTT TERM 444 582670 - 582653 - f 90 -9.1 -4.57837 | overlap 582654 ACAGGCCTTCAAAAA CGGCTCC ACAT GGAGCCA GCTAGGCCCAGCTTA TERM 445 582669 - 582654 - f 72 -10.4 -3.3422 | overlap 582653 CAGGCCTTCAAAAAC GGCTCC ACAT GGAGCC AGCTAGGCCCAGCTT TERM 446 584661 - 584686 + G 83 -14.7 -3.14132 | overlap 584663 TTGCCATGGCAATGT TTCCGAGGCGG CGCG CCGCCTCGGTA TTGATCGCACCACAA TERM 447 584663 - 584684 + G 91 -17.3 -3.13403 | overlap 584661 GCCATGGCAATGTTT CCGAGGCGG CGCG CCGCCTCGG TATTGATCGCACCAC acoR 582859 - 584745 + | transcriptional regulator TERM 448 585476 - 585510 + G 86 -6.2 -4.96848 | CATCGGCATGCTGAC GTTGCTTGCCGCGCGC GCG GCGGGCGCCACCCAGC TTTTTGTGTCCGACC Avi_7649 584910 - 585983 + | zinc-binding dehydrogenase TERM 449 587256 - 587290 + G 70 -4.1 -4.67353 | overlap 587257 CTCGGAAAGGGCGGT GCAGGGCGGCATGAC CACGC GTAAGGCCGACCTGA TTTTTGCATCCCTGC Avi_7650 586099 - 587901 + | flavin-containing monooxygenase TERM 450 587943 - 587903 - T 100 -16.1 -3.5393 | opp_overlap 587905 587906 587908, overlap 587904 ATCATCTGTCGTAAA GCCCATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATGATT GGTCCTGTAAGGTCG TERM 451 587942 - 587904 - T 100 -19.6 -2.72144 | opp_overlap 587905 587906 587908, overlap 587903 TCATCTGTCGTAAAG CCCATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATGAT TGGTCCTGTAAGGTC TERM 452 587905 - 587941 + T 100 -23.1 -3.24925 | opp_overlap 587904 587903, overlap 587906 587908 CATCTGTCGTAAAGC CCATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATGA TTGGTCCTGTAAGGT TERM 453 587906 - 587940 + T 100 -26.6 -2.54634 | opp_overlap 587904 587903, overlap 587905 587908 ATCTGTCGTAAAGCC CATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATG ATTGGTCCTGTAAGG TERM 454 587908 - 587938 + T 100 -23.4 -2.80988 | opp_overlap 587904 587903, overlap 587906 587905 CTGTCGTAAAGCCCA TAGGGGGCGCCAGC CTG GCTGGTGCCCCCTA TGATTGGTCCTGTAA menG 588877 - 588203 - | demethylmenaquinone methyltransferase TERM 455 589071 - 589054 - g 81 -4.1 -5.10461 | opp_overlap 589069, overlap 589055 TGGATGTAACAAAAA TGCGC TATTTTGC GCGCA TTGCAGAGCTAGGCT Avi_7653 589053 - 589952 + | Transcriptional regulator accB 590128 - 590547 + | acetyl-CoA carboxylase biotin carboxyl carrier protein accC 590544 - 591917 + | acetyl-CoA carboxylase biotin carboxylase Avi_7656 591914 - 592357 + | hypothetical protein Avi_7657 592357 - 593067 + | hypothetical protein Avi_7658 593064 - 594062 + | hypothetical protein Avi_7659 594078 - 594845 + | hypothetical protein TERM 456 595927 - 595915 - g 78 -9.1 -4.11216 | GCCTGATTGGCAAAA CCACC AAG GGTGG CCGCAAGATTGAAAA aatA 594894 - 596108 + | aspartate aminotransferase A TERM 457 596165 - 596127 - T 95 -11.9 -4.42386 | gap 1, overlap 596130 TGGCCATGTAGAAAA TAT-TGCACCATGCATCC CAAC GGATGCATGGCGCGCATA AACCGCTCTAATTCT TERM 458 596161 - 596130 - T 95 -15.2 -2.88788 | overlap 596127 CCATGTAGAAAATAT TGCACCATGCATCC CAAC GGATGCATGGCGCG CATAAACCGCTCTAA nac 597078 - 596173 - | transcriptional regulator LysR family Avi_7662 597318 - 598070 + | short-chain dehydrogenase Avi_7663 598067 - 598774 + | ABC transporter membrane spanning protein (amino acid) Avi_7664 598771 - 599523 + | ABC transporter membrane spanning protein (amino acid) TERM 459 599800 - 599810 + G 71 -6.8 -4.1891 | overlap 599809 TCAATGCCCTGCGCA GCCA GAT TGGC TTTGTATTCCAGAGC Avi_7665 599529 - 600296 + | ABC transporter nucleotide binding/ATPase protein Avi_7667 600370 - 601209 + | ABC transporter substrate binding protein (amino acid) TERM 460 601284 - 601241 - f 100 -16 -3.05816 | opp_overlap 601242 601245 TGATTGGGTATGTAA TTCTCCTTCACCGGCATGAC ATCC GTCACGCCGGTGAAGGTGCT TTCGCAAAGATTCCA TERM 461 601242 - 601283 + F 100 -17.3 -3.54459 | opp_overlap 601241, overlap 601245 GATTGGGTATGTAAT TCTCCTTCACCGGCATGAC ATCC GTCACGCCGGTGAAGGTGC TTTCGCAAAGATTCC TERM 462 601245 - 601280 + F 100 -22 -2.90615 | opp_overlap 601241, overlap 601242 TGGGTATGTAATTCT CCTTCACCGGCATGAC ATCC GTCACGCCGGTGAAGG TGCTTTCGCAAAGAT Avi_7669 601422 - 601793 + | transposase TERM 463 602133 - 602165 + G 78 -11.3 -3.6608 | opp_overlap 602131 AAGACCCATTGAACT TTCTCGCCGCTGTCA AAT TGGCAGCAGCAAGAA TTTGGATCAGATCGT Avi_7671 601790 - 602185 + | transposase Avi_7673 602615 - 602286 - | methyl-accepting chemotaxis protein Avi_7674 604411 - 602711 - | oxidoreductase Avi_7675 605730 - 604414 - | hypothetical protein Avi_7676 607205 - 605730 - | FAD dependent oxidoreductase Avi_7677 607733 - 608221 + | hypothetical protein TERM 464 608236 - 608219 - f 88 -5.5 -5.28176 | GCGATCCAGAAAAAA TGATGCC GACC GGCTTCA TGGAATTGGGAGCGA TERM 465 608281 - 608299 + F 81 -9 -4.11216 | opp_overlap 608278 608281 608283 GTGAAGTAAATATTA TAGTCAAT CTA ATTGACTA TTTTCAAAATGCCGA TERM 466 608406 - 608425 + F 81 -8.6 -4.39166 | GTATGATGCCGCGCC CTTTGGCG CGGG CGCTAAAG TTTTGATCTGTCCCC TERM 467 609177 - 609187 + G 71 -8.2 -4.08945 | opp_overlap 609163, overlap 609184 TCGCCCAATTCCGGT CGCG TGC CGCG TTTTGAACCCGTCGT TERM 468 609355 - 609365 + G 76 -3.2 -5.00616 | GCCTCATTCCGGCCC CGCT CGC AGTG TTTTTTGAAAAAAAG Avi_7679 608583 - 609776 + | Permeases of the major facilitator superfamily Avi_7680 609978 - 611372 + | porin B Avi_7681 612105 - 611605 - | CbaR Avi_7682 613373 - 612135 - | ferredoxin reductase TERM 469 613126 - 613162 + g 80 -4.4 -4.90778 | gap 1, opp_overlap 613136, overlap 613148 GTTCGCGTCACCCGA TCGATATGAATGGCCGG GTCC CCGGCTA-TCAGGCCGA TTTTGTTTCGGTGAA Avi_7683 614919 - 613702 - | cytochrome P450 hydroxylase Avi_7685 615505 - 615296 - | transposase TERM 470 615801 - 615776 - R 100 -16.1 -3.89346 | opp_overlap 615776 TCGTCATCGCACAAA GAGCGCGGCCC TTTC GAGCCGCGCCC ATAACGATGTTAAGC attK 617247 - 615820 - | NAD-dependent succinate aldehyde dehydrogenase TERM 471 616420 - 616447 + g 74 -7.8 -4.12942 | GACGCAGAATTGGGC GCTGTTCTGG AAGGCCGC CCAGAATAGC TTTTCGGCAGTTTCC fadD 618811 - 617309 - | long-chain-fatty-acid-CoA-ligase TERM 472 618922 - 618947 + r 77 -11.8 -3.25073 | overlap 618921 TGCAGGCCTCCCTCG CAGCCGCCCG CTCCTC CAGGCGGCTG TCTTGATCTTCGCAA Avi_7688 620067 - 619051 - | transcriptional regulatory protein TERM 473 619983 - 620008 + g 72 -6 -4.26903 | opp_overlap 619983, overlap 619973 619973 619978 TGCCTGCCGCGAGAA GCGCTGGCTG CTCTGT CATCCCGCGC TTTTGATAGGCTAAA TERM 474 620425 - 620435 + G 71 -8.2 -3.96148 | GATTGGTCAGCTTGC GGCC CAC GGCC TTTATGATGGCGAAG TERM 475 620803 - 620827 + G 72 -8.6 -3.85698 | GAGCGATGAGACGGT GATTGTGCGC GAACA GGGCACAATC TTTCTCGCAGGCCCG TERM 476 621278 - 621298 + G 72 -4.6 -4.57341 | overlap 621240 621290 ATTGAGCTTTGCGTT CAGCGCCG TATTC CGCTGCTG TTTTTGCAAAACATT mccB 620258 - 621793 + | 3-methylcrotonoyl-CoA carboxylase beta subunit TERM 477 621960 - 621979 + G 78 -6.4 -4.56597 | GTGCGCGTCCTTGTG CTGGCC GGTCGTGG GGCCAG TTTTTCCGCAGGCGC TERM 478 622059 - 622045 - g 79 -12.8 -3.21276 | opp_overlap 622054 622056, overlap 622043 CCCTTGCGGACAATA CGGCGG ATG CCGCCG CCATGGGGCGGATGT TERM 479 622583 - 622563 - g 72 -4.6 -4.56597 | GCCTTTCTGGAAAAA CGCAAACC CGGCT GGATCGCG GATCGGAAAGAAGGG Avi_7690 621801 - 622601 + | Enoyl-CoA hydratase/isomerase family protein TERM 480 624280 - 624305 + G 71 -11.3 -3.31726 | gap 1, overlap 624278 TTACGACGCGACGAT CATGATCGATGG GAA CCATCG-TCATG TGTTCTATACCGGAC accC 622613 - 624601 + | acetyl-CoA carboxylase biotin carboxylase hmgL 624612 - 625535 + | hydroxymethylglutaryl-CoA lyase Avi_7693 626932 - 626117 - | transcriptional regulator MerR family argD 627075 - 628355 + | acetylornithine aminotransferase Avi_7695 628708 - 628382 - | hypothetical protein TERM 481 628414 - 628448 + g 87 -18 -2.62184 | GAGTTGGCTTAGGCA TCGGACCGAAAAGTGG GAA CCGGTTTTCGGTCCGA TGCTCTAGGGCGAGC TERM 482 628604 - 628577 - G 88 -13.6 -3.66288 | opp_overlap 628583 CACTTCGGAATAGAA TGAGAATGCCGA AGCA TCGACATTCTCA ACACTCGCGAAATCG Avi_7698 629087 - 630115 + | IS1111A/IS1328/IS1533 family transposase orfB 631296 - 630217 - | IS3 family transposase TERM 483 630695 - 630718 + g 78 -9.6 -4.05788 | gap 1, overlap 630704 TCGTTCGAACGGGTG GCTGCGGTGCG GTG CG-ATCGCAGC TTTGCTTTGACGCGC TERM 484 630704 - 630735 + g 80 -9.4 -4.12599 | gap 1, overlap 630695 630730 CGGGTGGCTGCGGTG CGGTGCGATCGCAGC TTT GCTTTGA-CGCGCCG TTTTGGCACCTTGTT SEQUENCE gi|222080117|ref|NC_011982.1| Agrobacterium vitis S4 plasmid pTiS4, complete sequence (length 258824) TERM 1 621 - 610 - g 73 -3 -4.78107 | GATGACGAGCAAAAA TTCA TCTC TGAA GTCATCCAGCCCACC repA 136 - 1251 + | replication protein A repB 1336 - 2331 + | replication protein B TERM 2 2374 - 2347 - f 91 -2.7 -5.46706 | gap 2, opp_overlap 2366, overlap 2341 ACCGCAAAAGAAAAA GGCCCCCAAACGG TAAA CCGT--GGAAGCC TCTCTCGTATCTCTC repC 2487 - 3731 + | replication protein C TERM 3 4693 - 4704 + G 70 -4.4 -4.47707 | TCGGCAGCTATTGCG GTGT GATT ACAC TTCTTTTTGGTCCCG Avi_8003 3966 - 5258 + | hypothetical protein Avi_8004 6183 - 5296 - | hypothetical protein Avi_8005 6341 - 7270 + | hypothetical protein Avi_8006 8493 - 7357 - | integrase protein TERM 4 8539 - 8513 - H 100 -13.9 -4.89852 | CTATAGTGACAAAAA CGTCCGATAAT GCAAG ATTATCGGACG TAATAACACGACGAC TERM 5 8596 - 8560 - H 72 -10.9 -3.0371 | overlap 8581 ACACGACGACAGACA GTGCGGTTTATGTCG AAAGAAG CGGCTTAAACCGCAC ACCCGATTTACACTC TERM 6 9253 - 9267 + H 77 -8.5 -4.07687 | overlap 9253 ACGAGGCCGGGTTCG GCCGG GCGAG CCGGC TTTTCCAAAAGCCAT TERM 7 9613 - 9627 + G 75 -10 -3.72893 | opp_overlap 9611 AATCAAAAGAATCCC CAGGAC GAT GTCCTG TTTGATCGGGAGCTG Avi_8008 9562 - 10257 + | hypothetical protein Avi_8010 10919 - 10347 - | hypothetical protein Avi_8011 11011 - 11868 + | transposase protein TERM 8 12203 - 12218 + G 82 -6.1 -4.77567 | ATTGGCTCTGGCGCG CCGTC GATCAG GACGG TTTTGTTCTCGACGT Avi_8012 11908 - 12624 + | transposase protein Avi_8013 12803 - 13006 + | hypothetical protein Avi_8014 13035 - 13523 + | hypothetical protein Avi_8015 13818 - 14705 + | Ku protein Avi_8016 14709 - 15530 + | Ku protein ligD 18275 - 15594 - | DNA ligase D TERM 9 18211 - 18226 + g 83 -8.2 -4.65916 | overlap 18223 TTCACCCCGACTTCA CCGCTG GGCT CGGCGG TTTTCTTGAAGTCGC Avi_8018 19502 - 18618 - | transposase Avi_8019 19976 - 20953 + | dehydrogenase/flavin-dependent oxidoreductase protein Avi_8020 21013 - 22674 + | trehalose synthase Avi_8022 23997 - 23158 - | hypothetical protein TERM 10 23852 - 23864 + g 75 -10.5 -3.6445 | opp_overlap 23851 23850 TCCAGATCACGAACG CGGCG GAG CGCCG TTTCCCAATTCTTCT TERM 11 24337 - 24352 + H 81 -6.1 -4.77567 | ATTGGCTCTGGCGCG CCGTC GATCAG GACGG TTTTGTTCTCGACGT TERM 12 24400 - 24379 - H 71 -9.3 -3.53091 | opp_overlap 24384 ACGTGCTGGTGCAAA GCCGCCGCG ATGC CAAGGCGGC AAAGCGTTTGATGCG TERM 13 26309 - 26291 - g 72 -5.2 -4.42464 | opp_overlap 26291, overlap 26293 AAGCCGCCAAAGAAA TCGCCGTT CTT ATCGGCAA TTCTTCAAATGCGGT Avi_8025 24955 - 26739 + | sensory methylation accepting chemotaxis protein TERM 14 26844 - 26874 + T 71 -9.6 -3.53811 | opp_overlap 26844 26845, overlap 26845 ACTTTGTCTGCAAAA TCGCACCGAGAGTG GGG CATCCTCGGCGCGG TTTCACAGAGATGAC TERM 15 26874 - 26844 - T 81 -9.6 -4.07687 | opp_overlap 26844 26845, overlap 26845 ACTTTGTCTGCAAAA TCGCACCGAGAGTG GGG CATCCTCGGCGCGG TTTCACAGAGATGAC TERM 16 26845 - 26873 + T 70 -10.9 -2.72144 | opp_overlap 26844 26845, overlap 26844 CTTTGTCTGCAAAAT CGCACCGAGAGTG GGG CATCCTCGGCGCG GTTTCACAGAGATGA TERM 17 26873 - 26845 - T 83 -13.1 -3.04398 | opp_overlap 26845 26844, overlap 26844 CTTTGTCTGCAAAAT CGCACCGAGAGTG GGG CATCCTCGGCGCG GTTTCACAGAGATGA TERM 18 27042 - 27059 + T 75 -11.3 -3.09516 | CAACGTCAGCGCGGA GCCTCCT TTCT AGGAGGC TTACATCGTACCGCC Avi_8027 27371 - 27093 - | HNS-type DNA binding protein TERM 19 27503 - 27517 + H 85 -7.1 -4.82901 | GATTCGCGGACTTTT GCGGT ATTGC ACCGC TTTTTATCGACAACC nolR 28128 - 28448 + | transcriptional regulator ArsR family TERM 20 28870 - 28891 + F 71 -9.3 -3.53091 | opp_overlap 28864 CGCATCAAACGCTTT GCCGCCTTG GCAT CGCGGCGGC TTTGCACCAGCACGT TERM 21 28933 - 28918 - f 81 -6.1 -4.77567 | ACGTCGAGAACAAAA CCGTC CTGATC GACGG CGCGCTAGAGCCAAT TERM 22 29324 - 29349 + F 71 -9.1 -3.5032 | overlap 29322 ACTCGTCCTTTCCGA TTTGGTCCAAG ATGA TTTGGACCGAA TATTTGCTCTCGAAG Avi_8032 29340 - 30140 + | potential exonuclease TERM 23 30333 - 30310 - T 70 -6 -4.18506 | gap 1, opp_overlap 30323, overlap 30311 CCAGTTCCAAAACAA TC-CGCCGC GCCGCCT GCGGCGTGA CGTCCAGTGTCTTCG tnp 31265 - 30726 - | transposase TERM 24 31791 - 31772 - R 70 -5.7 -4.36914 | gap 1, opp_overlap 31783 31788 31790 GGCGGCGTGACAAAA GAGC-GGC CAAGC GCCTGCTC GTGGCGTTAATGAAG TERM 25 32011 - 31954 - R 81 -9.1 -4.11216 | gap 1, opp_overlap 31960, overlap 31955 CTGCCATTTCGAAAA CGGGAACGAACCA-TGCAGGGCCACCGA TCC CCGGGAGCATTGCAACGGTTCGTTTCCA TGCACTCCGCTACTC Avi_8042 33272 - 32520 - | transcriptional regulator AraC family TERM 26 33638 - 33653 + G 82 -6.1 -4.77567 | ATTGGCTCTGGCGCG CCGTC GATCAG GACGG TTTTGTTCTCGACGT Avi_8044 33343 - 34059 + | transposase traG 35393 - 34845 - | Ti-type conjugative transfer system protein TraG TERM 27 35231 - 35213 - G 70 -4.5 -4.43012 | gap 1 ACGCGAACAGGAAAA GCGTGCCG ATCG CAGC-CGC GGTCGCATAGGGCAG traD 35595 - 35380 - | conjugal transfer protein Dtr system traC 35896 - 35600 - | conjugal transfer protein Dtr system TERM 28 39017 - 38979 - R 100 -15.4 -3.53012 | GTTCCCGCCCTGAAA CGCGATCTCGCGCA ATATCTGCGGA TGCGCGAGACCGCG ACGCAACGCGTTGCG TERM 29 39431 - 39403 - R 95 -12.3 -4.2573 | overlap 39392 GAAACAAGCTGAAAA CCTGCGGCTGACG CAG CGCCAGTCGCCGG TGATGAAGCAGTGAA Avi_8059 41259 - 40885 - | transposase TERM 30 42082 - 42107 + r 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 31 43840 - 43803 - R 80 -12 -3.27525 | gap 1 CCTGGGCAAAGCTAA GGCCCGGATTGGCTCGC TTCTG GCTAG-CTATCCGGGCC TCCTAGATGCATGAA Avi_8066 44956 - 44012 - | hypothetical protein exsI 45393 - 44953 - | transcriptional regulator Avi_8068 47018 - 45390 - | GGDEF family protein TERM 32 47808 - 47820 + H 78 -9.1 -3.90112 | opp_overlap 47796 AAACCGAGTACGCCC GGTCC CAT GGACC TTTAGTTCGGAGGAA Avi_8070 47843 - 48883 + | transposase TERM 33 49621 - 49642 + T 71 -9.3 -3.53091 | opp_overlap 49615 CGCATCAAACGCTTT GCCGCCTTG GCAT CGCGGCGGC TTTGCACCAGCACGT TERM 34 49684 - 49669 - T 81 -6.1 -4.77567 | ACGTCGAGAACAAAA CCGTC CTGATC GACGG CGCGCCAGAGCTAAT Avi_8072 49979 - 49695 - | transposase Avi_8073 51265 - 49976 - | hypothetical protein Avi_8074 51682 - 51395 - | transcriptional regulator Avi_8075 52392 - 51718 - | hypothetical protein TERM 35 52138 - 52090 - G 88 -14.4 -3.55761 | gap 1, opp_overlap 52085 52092, overlap 52091 52094 CATCGATGCTCCAAA TGTATTCCATCTGTGGAATAT TTCAAGCG ATATTCCACAGATGGAATA-A CTCGATCGCTTTCGA TERM 36 52138 - 52091 - G 86 -16 -2.73243 | opp_overlap 52085 52092, overlap 52090 52094 ATCGATGCTCCAAAT GTATTCCATCTGTGGAATAT TTCAAGCG ATATTCCACAGATGGAATAA CTCGATCGCTTTCGA TERM 37 52135 - 52094 - G 87 -17.7 -2.64472 | opp_overlap 52092 52085, overlap 52090 52091 GATGCTCCAAATGTA TTCCATCTGTGGAATAT TTCAAGCG ATATTCCACAGATGGAA TAACTCGATCGCTTT TERM 38 52319 - 52293 - G 89 -6.5 -5.1101 | gap 1, overlap 52295 TTACTAGGCAAAAAA TAGGGCCACCGG AAAA CCGA-GGCCCTT GAAGTGTGAAGGTTA TERM 39 52317 - 52295 - G 78 -9.1 -4.1821 | gap 1, overlap 52293 ACTAGGCAAAAAATA GGGCCACCGG AAAA CCGA-GGCCC TTGAAGTGTGAAGGT TERM 40 52983 - 52966 - gH 70 -9.9 -3.22223 | GAACTCGATGACGAA GACGATC TGGA GATCGTC CATGAATATGTTCCG Avi_8076 52672 - 53013 + | hypothetical protein TERM 41 52998 - 53022 + GF 95 -12.1 -4.09685 | overlap 53002 CCATGAATATGTTCC GGGTGGGTCTC ATT GAGACCCTTCC TTTTCACAGGTGCCG TERM 42 53002 - 53018 + GF 88 -12.3 -3.67175 | overlap 52998 GAATATGTTCCGGGT GGGTCTC ATT GAGACCC TTCCTTTTCACAGGT TERM 43 53115 - 53100 - gf 78 -9 -3.87815 | CGGCATCGGCACAAA CCTGCA GATC TGCAGG TTGCCAGCCGCGCCC Avi_8077 52985 - 54193 + | hypothetical protein Avi_8078 54336 - 54938 + | hypothetical protein TERM 44 54979 - 55037 + F 85 -10.4 -4.26076 | gap 3 CTGCCACCGACGTTC GGGCTGTGTCGGTCCGTGGTCAGCGACGC ATCT GCG--GATTACCACGGA-CGACACGTCCC TTTTCATCAGCCTGA TERM 45 56186 - 56205 + G 76 -12.2 -3.38812 | overlap 56167 56183 TCGCGACGCCGGCAC GGATGTCG TCGT CGACATCC TGTTCTTCCGCAAGC Avi_8079 55167 - 56579 + | helicase SNF2 family Avi_8080 56800 - 57684 + | transposase TERM 46 58299 - 58312 + G 72 -4.5 -4.59773 | overlap 58292 58300 CACCGTTATCGCCGA TCTCG GCGG CGAGG TTTTTCGCGATCCCG TERM 47 58927 - 58941 + G 72 -9.2 -3.65699 | CATCTGAAACTCCCC GGTGCC TCT GGCGCC TTCGTTCTTTATGGG Avi_8083 57688 - 61323 + | helicase Avi_8085 64496 - 61659 - | hypothetical protein rzcA 65224 - 64493 - | rhizobiocin/RTX toxin Avi_8089 66406 - 65582 - | PEP phosphonomutase TERM 48 65628 - 65610 - G 76 -3 -5.00616 | overlap 65611 GTGCCGTTGAAAAAA CCTTCGAG CTC CGCGAAGC CCATAGCGTCCTCCG TERM 49 66301 - 66264 - G 100 -9 -4.9725 | overlap 66268 ACGCCGAGAGAAAAA GCCATCCCGGCGCTGG TGGTCG CGAGCGCCGGAAAGCC CAATGCTGCGAGAAT TERM 50 66527 - 66499 - H 79 -2.3 -5.28826 | overlap 66505 AAACCGGAGAAAAAA GAAAAAGCCTCTC ACA GATCGGCCTTCCC GCCGCCGCTTGCGCT TERM 51 66521 - 66505 - H 100 -2.1 -5.8096 | overlap 66499 GAGAAAAAAGAAAAA GCCTCTC ACA GATCGGC CTTCCCGCCGCCGCT TERM 52 67305 - 67324 + H 71 -9.3 -3.53091 | opp_overlap 67294 CGAACGCGCCGAGTG GCACACG ATCTCC CGTGTGC TTTCAAAGACCGCAT TERM 53 68527 - 68560 + H 93 -8.2 -5.03145 | gap 2, opp_overlap 68524, overlap 68530 CTTCCGGATGAACGT CCG--CCGCCGCTGGT CTCC ATCAGCGGCGGTTTGG TTTTTTACACCCTTA TERM 54 68530 - 68555 + H 100 -16.9 -4.42765 | opp_overlap 68524, overlap 68527 CCGGATGAACGTCCG CCGCCGCTGGT CTCC ATCAGCGGCGG TTTGGTTTTTTACAC Avi_8094 68595 - 69068 + | hypothetical protein TERM 55 69119 - 69102 - g 78 -14.1 -2.63631 | opp_overlap 69102 CCAACGTCGACAGCA CCCCCGG ATTT CCGGGGG TTTCTTTTGGGCGAT TERM 56 69102 - 69119 + G 100 -14.1 -4.65263 | opp_overlap 69102 CCAACGTCGACAGCA CCCCCGG ATTT CCGGGGG TTTCTTTTGGGCGAT Avi_8095 69065 - 69952 + | hypothetical protein Avi_8097 69949 - 70353 + | hypothetical protein TERM 57 70564 - 70519 - f 100 -13.9 -4.56597 | opp_overlap 70527 GCCGCTCTCGAAAAA GCAGGCACGCGGGCTTCGCAG GTCT CTGCAAGACCCGCTTTCCCGC ACACCGGCTTTGCTC TERM 58 70527 - 70556 + F 74 -9.9 -3.53012 | opp_overlap 70519 CGAAAAAGCAGGCAC GCGGGCTTCGCAG GTCT CTGCAAGACCCGC TTTCCCGCACACCGG TERM 59 70608 - 70621 + F 71 -9.5 -3.51232 | CGGACCCTGAACCGC CCGGC TTGC GCCGG TTCCTTTCGACCGCA Avi_8098 70699 - 71298 + | hypothetical protein TERM 60 71307 - 71326 + F 81 -12.8 -3.21912 | opp_overlap 71300 71301, overlap 71301 TGAGTAAACCACCGT GGCGGGGC TTTG GCTCCGCC TTCATCACTTCAAGG TERM 61 71339 - 71363 + F 85 -11.3 -3.64103 | overlap 71340 GCCTTCATCACTTCA AGGTCGCCCTC TTT GGGGGCGGCCC TTTGGCGTGTCGATC TERM 62 71340 - 71362 + F 90 -14.8 -2.7814 | overlap 71339 CCTTCATCACTTCAA GGTCGCCCTC TTT GGGGGCGGCC CTTTGGCGTGTCGAT TERM 63 71497 - 71481 - f 74 -10.1 -3.53444 | GGAGCCGGCGTCAAA GGCGCAA CGG CTGCGCC GTCCTCCACATGCGT ardC 71614 - 72540 + | antirestriction protein TERM 64 73142 - 73156 + T 77 -11.4 -3.14211 | CCGACCTTCTTCCCC TGCGGC TAT GCCGCA TTCCTCGCGAAACAT Avi_8103 73613 - 73428 - | transposase Avi_8104 74479 - 73595 - | transposase Avi_8105 75630 - 74734 - | IS1111A/IS1328/IS1533 family transposase TERM 65 75984 - 75931 - R 75 -5.4 -4.731 | gap 3, overlap 75932 75974 AATTGAGCAAGAAAA CGTGGCTGGTGACCTCTATTTCGCCGG GCA CCGGCGAGA-AGATGTCAC--GTCACA ACGTTGACGGTGGAG TERM 66 76482 - 76459 - R 70 -10.2 -3.182 | overlap 76457 TGGAAACATTGAAGA CCGGCGACGG GCGC CCATTGCCGG AGCACATGAAGAGGC TERM 67 77397 - 77411 + r 77 -11.4 -3.14211 | CCGACCTTCTTCCCC TGCGGC TAT GCCGCA TTCCTCGCGAAACAT TERM 68 77752 - 77769 + r 85 -8.3 -4.48877 | AGTCTTATGGCGGCG GCCCCAG TATT CCGGGGC TTTTGTGGCTGTTTC Avi_8111 78151 - 77849 - | hypothetical protein TERM 69 78177 - 78195 + H 72 -10.2 -3.31144 | CTGTGCTGTGTTCAA GCCCGCGA CCA TCGCGGCC TTGTGGCGATCGAGA Avi_8114 78540 - 79766 + | integrase/recombinase xerC 79742 - 80680 + | site-specific tyrosine recombinase XerC TERM 70 81286 - 81266 - g 74 -6 -4.41348 | opp_overlap 81267, overlap 81267 CGCTCTGGAAAGAAA CGGCCCGC GACGT GCGAGCCT GGCTTGCGGTGCGCG Avi_8116 80677 - 81684 + | integrase/recombinase TERM 71 81988 - 81970 - f 72 -10.2 -3.31144 | TCTCGATCGCCACAA GGCCGCGA TGG TCGCGGGC TTGAACACAGCACAG Avi_8119 82014 - 82316 + | hypothetical protein TERM 72 82413 - 82396 - f 85 -8.3 -4.48877 | GAAACAGCCACAAAA GCCCCGG AATA CTGGGGC CGCCGCCATAAGACT Avi_8120 82457 - 82654 + | hypothetical protein TERM 73 82702 - 82655 - f 100 -14.8 -3.61398 | gap 1, overlap 82668 CGCGGTGCCGAATAA GCCCCGGAT-ATGACGCCCCGCA CAC TGCGGGGCGTCGCCAGCCTAGGC CACTCGGCAGCTTAA TERM 74 82688 - 82668 - f 100 -18.3 -2.62515 | overlap 82655 AAGCCCCGGATATGA CGCCCCGCA CAC TGCGGGGCG TCGCCAGCCTAGGCC Avi_8121 82794 - 83042 + | hypothetical protein TERM 75 83138 - 83102 - T 85 -13 -3.16742 | gap 1, opp_overlap 83097 83094, overlap 83063 83104 TCGAACCGGGACTAA GACTGGAG-GCCCCGCC GCGA GGCGGGGCTCTCCACTA CCTGGATCACTTGTT TERM 76 83136 - 83104 - T 100 -15.6 -3.14527 | gap 1, opp_overlap 83097 83094, overlap 83063 83102 GAACCGGGACTAAGA CTGGAG-GCCCCGCC GCGA GGCGGGGCTCTCCAC TACCTGGATCACTTG Avi_8123 83423 - 83145 - | HNS-type DNA binding protein TERM 77 83478 - 83457 - R 73 -3.7 -4.78848 | gap 1, opp_overlap 83457 83462 TTGTCAAAGATAAAA TCCGTGTCAG CTT CTGACT-GGA TTGTCATCGGTGACG Avi_8126 83815 - 83507 - | hypothetical protein yci 84310 - 83870 - | nuclease traG 86271 - 84307 - | Ti-type conjugative transfer system protein TraG TERM 78 86109 - 86091 - G 70 -4.5 -4.43012 | gap 1 ACGCGAACAGGAAAA GCGTGCCG ATCG CAGC-CGC GGTCGCATAGGGCAG traD 86473 - 86258 - | conjugal transfer protein Dtr system traC 86774 - 86478 - | conjugal transfer protein Dtr system TERM 79 87656 - 87682 + G 73 -11.7 -3.14132 | gap 1 CCATCTGGCCCTCGG CGG-CATCGATC TCAG GATCGATGGCCG TTCCTACAAAAAGCA TERM 80 88462 - 88438 - g 93 -9.9 -4.77165 | TGCTCGACAATAAAA CCGTCTTCGTC ATG GACGAGGCCGG CATGGTGGCCTCGAA traA 87030 - 90332 + | Ti-type conjugative transfer relaxase TraA traF 90329 - 90859 + | conjugative transfer signal peptidase TraF TERM 81 91277 - 91311 + F 78 -5.5 -4.87133 | overlap 91279 GCCGCCCTTCGGCAT CACCGGCTGGGCGCA TCCGC TGACCGCAGCCGGCG TTTTGTTTCCCGGAT traH 92094 - 92723 + | conjugal transfer protein Dtr system Avi_8136 92879 - 93325 + | hypothetical protein Avi_8137 93351 - 93785 + | hypothetical protein traM 94123 - 94431 + | transcriptional repressor TERM 82 94494 - 94512 + T 72 -7.4 -3.96337 | overlap 94507 CCGCATTAGTCTTTG TCGTCGAG CCT CTCGAGGA TTTCGTAGTTTTTGA TERM 83 94573 - 94593 + T 88 -10.5 -4.08767 | CAAGCACAGCATCCG TCGAGATCG CGC TGATCTCGA TTTTAACAAGATGGA traR 95522 - 94839 - | transcriptional regulator TERM 84 95691 - 95711 + r 76 -7.5 -4.18401 | CGCCTTCATGCTCAT CGGCCTGCA GTT TGAAGGTCG TTTTCACATATGTCG alr 96776 - 95892 - | alanine racemase TERM 85 96908 - 96897 - H 77 -5.8 -4.68424 | overlap 96898 GAATGTATTGAAAAA CGGA GGAA TCCG CCATGTCCGCTCTGG Avi_8143 96911 - 97372 + | transcriptional regulator Avi_8145 98604 - 97789 - | transcriptional regulator IclR family TERM 86 99281 - 99271 - g 76 -4.6 -4.73682 | GCCTACAACACAAAA CACG TAT CGCG CGAGGAGGCTAAAAA TERM 87 99309 - 99298 - g 83 -4.4 -5.06451 | GAGGAGGCTAAAAAA CTTG GCTA CAAG CTCCTTTGGGACAAG Avi_8146 98782 - 99897 + | spermidine/putrescine binding protein of ABC transporter TERM 88 99932 - 99912 - f 71 -11.1 -2.87211 | AGCTTTTCGCACAGA TGGCCGCGT CAG AGGCGGCCA AATGCGAACCTCAGC Avi_8147 100330 - 101070 + | ABC transporter nucleotide binding/ATPase protein potB 101072 - 101953 + | ABC transporter membrane spanning protein TERM 89 102096 - 102115 + G 72 -4.9 -4.56597 | overlap 102092 CATGCAAGGGGTCGG GCTCCGC TGGTTC GCCGAGC TTTTTCAGAACGAGA Avi_8149 101950 - 102750 + | ABC transporter TERM 90 102755 - 102740 - f 82 -11.8 -3.56568 | opp_overlap 102732 GAATCAGGTCGCAAA GGCGGC TTTA GCCGCC ATCGCGCAAGCCGGT TERM 91 102758 - 102791 + F 70 -11 -2.70932 | GGCTTTAGCCGCCAT CGCGCAAGCCGG TCCGAAGTCT CCGGCTTGCGCC TACTTCAACGAAACA bioA 102871 - 104217 + | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 92 105025 - 105042 + G 72 -9.1 -3.87576 | ACTCGTTGCAGATTG CGGCGGT ATCG ACCGCTG TTTGCCTTCTTATCG potB 104805 - 105662 + | ABC transporter membrane spanning protein Avi_8156 105659 - 106453 + | ABC transporter potF 106492 - 107529 + | ABC transporter substrate binding protein (putrescine) TERM 93 107546 - 107584 + F 81 -11.1 -3.70902 | gap 1, opp_overlap 107569, overlap 107550 CACAAGCCGATCGTT TCA-TTCCGTGACAGGTC AACA GACCTGTCACGGATCTGC TTTGACTCTCGACAG TERM 94 107550 - 107579 + F 100 -20.9 -3.03038 | opp_overlap 107569, overlap 107546 AGCCGATCGTTTCAT TCCGTGACAGGTC AACA GACCTGTCACGGA TCTGCTTTGACTCTC TERM 95 108406 - 108418 + G 72 -4.8 -4.6902 | GCGAAAGTCGTGGAG CGTC AAGAC GACG TTTTTGAAGTTCTGG potG 107614 - 108747 + | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 96 109484 - 109503 + G 76 -7 -4.44448 | overlap 109487 GCTGTTCTTGCAGAG CGGGCCGG GCTG CCGGCTGG TTTGTTTAACGTCGT TERM 97 109591 - 109564 - g 78 -8.4 -4.21676 | opp_overlap 109570, overlap 109570 AGAATTCACCGAAAA CGACAAGGTCAG GAAG CTGACCTTTACG GGCTCAACAGATGTC attK 108866 - 110350 + | NAD-dependent succinate aldehyde dehydrogenase TERM 98 110426 - 110446 + F 100 -14.7 -4.02719 | opp_overlap 110426 TGGACTGTTAGAGAA GCGGGCGAG AAT TTCGCCCGC TTTCGTGTTTCCTGG TERM 99 110446 - 110426 - f 95 -14 -3.49475 | opp_overlap 110426 TGGACTGTTAGAGAA GCGGGCGA GAATT TCGCCCGC TTTCGTGTTTCCTGG TERM 100 110509 - 110519 + F 70 -6.8 -4.0371 | TCCTGATAGGGCCGT CGCA TAA TGCG TTTGTATGCAAGCTG dfpA 110875 - 112443 + | ABC transporter substrate binding protein (peptide) Avi_8163 113337 - 112588 - | transcriptional regulator IclR family Avi_8165 115041 - 113659 - | oxidoreductase TERM 101 114058 - 114026 - GR 77 -9.7 -3.67588 | overlap 114015 GAAACGCTACTCAAA GTCCACCGGGCCAGA GCC TCGGGCCCGGTTACC GCGAAGCGGCTGATC TERM 102 114916 - 114936 + gr 74 -11.1 -3.14463 | opp_overlap 114901 114900 GCCGGCGATGCCGCC GCCGATGAC GAC GACATCGGC TTGCTCGGGCAGCTT Avi_8166 115870 - 115013 - | hypothetical protein TERM 103 115918 - 115947 + r 76 -12.1 -2.59267 | gap 1, opp_overlap 115918, overlap 115917 TCTTTCATGACGAAA CGCGGTGC-GGACC CTT GGCCCTGCATCGCG ATTGCTCTGCTTCAG TERM 104 115947 - 115918 - R 91 -12.1 -3.78775 | gap 1, opp_overlap 115918 115917 TCTTTCATGACGAAA CGCGGTGC-GGACC CTT GGCCCTGCATCGCG ATTGCTCTGCTTCAG Avi_8168 117338 - 115983 - | hypothetical protein Avi_8169 118275 - 117493 - | ABC transporter membrane spanning protein potB 119141 - 118272 - | ABC transporter membrane spanning protein afuC 120235 - 119141 - | ABC transporter nucleotide binding/ATPase protein (iron) Avi_8173 121284 - 120250 - | ABC transporter substrate binding protein (spermidine/putrescine) TERM 105 120794 - 120820 + g 95 -13.6 -4.01939 | opp_overlap 120781 AAGGCCGCAATTTCG GGGGCAGGCCAC ATG GCGACCTGCCCC TTTAGTTCTGGCTTG TERM 106 121065 - 121087 + g 80 -9.9 -4.13767 | gap 1 GGGTCGGATTGTTCT TCTCGGCGCG GATA CG-GCCGAGA TTTTGCGCTGAAAGG hyuB 123072 - 121315 - | hydantoin utilization protein TERM 107 122161 - 122185 + g 71 -11.3 -3.18264 | opp_overlap 122160 122155 CGCGTAGAAGATAGC CGCCCAGGTCG TGG CGAGCGGGGCG TTGATCGGTCCGCGG hyuA 125130 - 123085 - | hydantoin utilization protein TERM 108 125154 - 125174 + H 71 -11.1 -2.85351 | CCGTTGACACTTGTT GTGGCGGCT TGC AGCCGCCAG TCTGCTGTCGGGGGA TERM 109 125382 - 125353 - H 72 -4.9 -4.65747 | CAAGCTCTAAGAAAA TCACGGATTGCCT TCGA AGGCGCTCTGTGA CCTGCCCATGTAGCT TERM 110 125562 - 125535 - H 93 -3.6 -5.54907 | gap 1, overlap 125558 TTTATAAAATAAAAA TCGTATCACATTA TGA TAACA-GATACGA CGCGCAGGCCGGGAG TERM 111 125610 - 125598 - g 70 -4.7 -4.43844 | TTATGAGTGAGAAAA GCGTC GAG GGCGC ACAGGTTATCGGCAA Avi_8178 125585 - 126352 + | Transcriptional regulator Avi_8180 126581 - 127522 + | ABC transporter membrane spanning protein (oligopeptide) Avi_8181 127519 - 128400 + | ABC transporter membrane spanning protein TERM 112 128823 - 128807 - g 87 -9.4 -4.64657 | GGAAATGCTTAAAAA GGTCGG TATCC CCGACC CGGAACGCCGGATTG TERM 113 130163 - 130141 - g 82 -9 -4.4261 | TTTGGAATATGAAAA GCGACGGGCA TTT CGTCCGCCGC ACCGCGCCATTGCTC Avi_8183 128400 - 130190 + | ABC transporter nucleotide binding/ATPase protein TERM 114 130369 - 130354 - g 83 -11.8 -3.86015 | opp_overlap 130354 TATCGCGGCCAGAAA GGCGGC TTAC GCCGCC TATGGTCAAGGTACG TERM 115 130354 - 130369 + G 70 -11.8 -2.79183 | opp_overlap 130354 TATCGCGGCCAGAAA GGCGGC TTAC GCCGCC TATGGTCAAGGTACG Avi_8184 130199 - 131530 + | MmgE/PrpD family protein TERM 116 131678 - 131697 + F 81 -10 -3.92522 | ATTTTCGGCGATGAG GCGACTTC CTGT GAGGTCGC TTTATCGACTTGAGC adhP 131825 - 132874 + | alcohol dehydrogenase TERM 117 132889 - 132903 + F 70 -7 -4.04927 | opp_overlap 132875 132871 ACCGCAGCTTCGAAC GCAGCG GCC CGCGGC TTCTTTCATGCTTCG Avi_8188 132911 - 134464 + | aldehyde dehydrogenase TERM 118 134530 - 134485 - f 100 -13.3 -4.20084 | gap 1, overlap 134486 AGCACTTATTGAAAA TCCC-CGCCTGAATGAGATCGC ACC GCGAGACCTTTCAGGCGAGGGA AGGATGTCGTCCGAT TERM 119 134528 - 134486 - f 93 -14.8 -3.11569 | overlap 134485 GCACTTATTGAAAAT CCCCGCCTGAATGAGATCGC ACC GCGAGACCTTTCAGGCGAGG GAAGGATGTCGTCCG TERM 120 134980 - 134992 + F 90 -9.1 -4.57073 | opp_overlap 134979 TCCGCCCGATACGAC GGGGA ACA TCCCC TTTTTGAGCAAGCTC TERM 121 135870 - 135895 + F 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 122 136338 - 136326 - f 72 -7.7 -3.99592 | ATCGATCACCAGAAA CGCAT CGG ATGCG CCAACGATCCTGTCC TERM 123 136925 - 136960 + F 81 -10.8 -3.65812 | opp_overlap 136925 136922 136930, overlap 136930 GCTTTTAGTATATTA TCAAACAATATTGAAT TATA ATTAAATATTGTTTGA TTATGTTCGAGCAGA TERM 124 137618 - 137589 - g 75 -12.3 -3.22618 | gap 1, opp_overlap 137588, overlap 137587 137591 CTTTTAGAGAAGAGA TATGCAAGCGAGAG ATC CTC-CGCTTGCACA ATAGTTTATCTTTCG TERM 125 137616 - 137591 - g 79 -12.7 -3.17443 | gap 1, opp_overlap 137588, overlap 137589 137587 TTTAGAGAAGAGATA TGCAAGCGAGAG ATC CTC-CGCTTGCA CAATAGTTTATCTTT Avi_8194 137201 - 137929 + | T-DNA oncoprotein TERM 126 138169 - 138188 + T 79 -2.2 -5.30575 | opp_overlap 138173, overlap 138173 TTTATTAAAATTTTA TAAATATG GCAT CATATGTA TTTTTTGGATTTTTG nos 139356 - 138220 - | D-nopaline dehydrogenase TERM 127 139929 - 139903 - H 86 -6.6 -4.96848 | opp_overlap 139921, overlap 139905 GGGGTGATACAAAAA TATGCAAACGTA TTT CACGTTCGCAGA TGCAGCGAGCTTGTG TERM 128 139927 - 139905 - H 81 -9.2 -4.11141 | opp_overlap 139921, overlap 139903 GGTGATACAAAAATA TGCAAACGTA TTT CACGTTCGCA GATGCAGCGAGCTTG TERM 129 140784 - 140759 - H 78 -9.1 -3.96148 | gap 1 TGCGTGGATGAGAAA TCGCAAATCCAG GCA CTGGAT-CGCGA GCAGCCGGTTCTGCC TERM 130 141601 - 141612 + H 77 -5.8 -4.64676 | opp_overlap 141598 AGTAAAAACTGACTT CCCT TGAA AGGG TTTTCTTCCGGCTCG TERM 131 142368 - 142330 - g 73 -11 -3.38224 | opp_overlap 142328, overlap 142328 ATGTGATCCGAAAGA CCTATTTCGCCGGGAT TGATTTG ATCCCGGCGAACCTGG AACTTATGGAGTATG TERM 132 142543 - 142557 + G 75 -9.2 -3.8062 | CTCTTGGCGCCCTAT GCGCTG CCA CGGCGC TTCTTATCACCATTC repA 141732 - 142943 + | replication protein A repB 142940 - 143977 + | replication protein B TERM 133 144031 - 144004 - f 81 -10.6 -3.69354 | CGCCAGAACCGGAAA GGGCCCATCGAC TGCA ATCGATAGACCC TTGAACTAGCGGCCA TERM 134 144521 - 144578 + G 71 -7.8 -4.03413 | gap 2, opp_overlap 144562 GGTAAATAGATGTAT CCGACGGCTAGTTGAAGCTGGTATCG CGGCTTAT CGAGAC-AGCT-CAACGGGCCGACGG TTTGTATACCGCAAT TERM 135 144988 - 145011 + G 83 -8 -4.56597 | opp_overlap 144987 144986, overlap 144989 AAAGTAATAAAATGC CGACCCGCTC TAAC GAGCGGGGCA TTTTTCAAGAAAACG TERM 136 144989 - 145010 + G 73 -11.5 -3.33744 | opp_overlap 144987 144986, overlap 144988 AAGTAATAAAATGCC GACCCGCTC TAAC GAGCGGGGC ATTTTTCAAGAAAAC TERM 137 145041 - 145025 - g 100 -15.1 -4.63932 | opp_overlap 145027 CATTTTTCAAGAAAA CGGCCGC TAC GCGGCCG AAGGGGCTTTTGAAA repC 144222 - 145484 + | replication protein C Avi_8202 146581 - 145481 - | transposase TERM 138 146019 - 146044 + g 75 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 139 147899 - 147909 + r 77 -8.2 -4.06384 | TCAACAGCGGCTCAC GGCC CTT GGCC TTTCTGGTCTTCAGG TERM 140 147996 - 148019 + r 77 -11.7 -3.18912 | opp_overlap 147996, overlap 147984 GACCCCGCCCATAGA GGCGGCTTG GCTCCG CGAGCCGCC TTCGTAGATCACTGA TERM 141 148049 - 148072 + r 78 -11 -3.52113 | opp_overlap 148048 148039, overlap 148047 ACAAAGCAAGCAATC GCCGGGAC CAGTCCGT GTCCCGGC TCTTTCTGGCAAGCT virD5 150673 - 148205 - | virA/G regulated protein TERM 142 149873 - 149893 + g 73 -3.3 -4.82667 | gap 1, overlap 149878 GAGATCTTCCCATCC TGGCTGCG CGGGCC CG-AGCCA TTTTTCGTATGCTAG TERM 143 150394 - 150407 + g 77 -8.1 -4.32579 | overlap 150392 CGGAACTGTCTATCG CGCTC ATGC GAGCG TTTATTATCGGATCT virD4 152772 - 150781 - | virA/G regulated protein TERM 144 152206 - 152196 - G 74 -8.2 -4.21936 | opp_overlap 152195 152196, overlap 152197 GCGAGAACTTGAAAA CGGC GTC GCCG CTTGATCTGCGCGCC virD3 155502 - 152830 - | virA/G regulated protein TERM 145 153839 - 153852 + g 87 -9.5 -4.63218 | overlap 153838 TCGAGAGCGACGGGT GCCGC CCGG GCGGC TTTTGTTCCCGAAAC virD2 156727 - 155516 - | endonuclease virD1 157200 - 156754 - | virA/G regulated topoisomerase TERM 146 157025 - 157012 - G 75 -9.5 -3.87994 | opp_overlap 157015 ATCGATCTCGAGAAA GCCGG CGAT CCGGC GGACCGCAATTCTTA virC1 157457 - 158152 + | virA/G regulated protein TERM 147 158209 - 158197 - g 72 -6.2 -4.4078 | GTCGGTGAAGCAAAA CGGC TTGCT GCCG CGCGACCGGAGATCG virC2 158149 - 158763 + | virA/G regulated protein virG 159610 - 158885 - | two component response regulator virB11 160875 - 159841 - | P-type DNA transfer ATPase VirB11 virB10 162030 - 160909 - | component of type IV secretion system virB9 162908 - 162030 - | P-type conjugative transfer protein VirB9 virB8 163618 - 162905 - | component of type IV secretion system virB7 163772 - 163605 - | VirB7 virB6 164687 - 163800 - | component of type IV secretion system virB5 165415 - 164747 - | component of type IV secretion system virB4 167812 - 165443 - | component of type IV secretion system virB3 168138 - 167812 - | VirB3 virB2 168500 - 168135 - | VirB2 virB1 169232 - 168516 - | component of type IV secretion system TERM 148 169458 - 169469 + H 72 -4.4 -4.63007 | GATCACGTTATGGCA TCAG GGAT CTGA TTTTCTCTGATTGTG TERM 149 170049 - 170074 + H 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 150 170210 - 170222 + H 76 -10.5 -3.28712 | GTTGTTGATGTCGCG CGCCG TCA CGGCG TTATAGCAAACCAGC Avi_8230 170524 - 170877 + | transposase Avi_8231 170939 - 172600 + | transposase TERM 151 172638 - 172588 - T 100 -15.6 -3.85698 | gap 1 TGCCGCCCGCATAAA GGCCTCACAATGAGCTCGTCAGA TACTCG TCGGT-GAGCTCATCGTGAGGCC CCAAAGGCAAAACTA TERM 152 172869 - 172881 + T 75 -4.8 -4.81083 | overlap 172867 GTTATGAAGTGAGCG TCCG GCGAA CGGA TTTTTGGTGGTTCGA Avi_8233 173212 - 172907 - | hypothetical protein Avi_8237 174439 - 174077 - | transposase Avi_8238 174783 - 174421 - | transposase TERM 153 174956 - 174944 - R 73 -9.1 -3.61398 | TCTGCTGCGGAAGAA CGTCG TGC CGACG TGCTACATCCGAAAC TERM 154 175154 - 175143 - R 72 -7.2 -4.25104 | TGCGCCCGACCAAAA CCGG CTCA CCGG ACGCTCACGTTATGA virE3 177296 - 175275 - | virA/G regulated protein TERM 155 175900 - 175917 + g 84 -4.1 -5.2015 | opp_overlap 175893, overlap 175914 GGTCGAAAGAGATGT CCTCG CCACTCAC CGAGG TTTTTCTCTTCTTGC virE2 179033 - 177363 - | exported virulence protein TERM 156 177880 - 177903 + g 78 -8.9 -4.14739 | CCCTCTTTCAAGGCT TGCGTCCAA GGGGAA TTGGGCGCA TTTTGAAATAGGTAG TERM 157 178279 - 178289 + g 73 -3.2 -4.85433 | CCAGCTTGAAACTCG TGCT CAT AGCG TTTTTGAATTTCTCT TERM 158 178407 - 178397 - G 91 -6.8 -5.252 | TAGTTTGATAAAAAA TGGC GGT GCCA GTAATACCCATCTCG virE1 179238 - 179047 - | protein secretion chaperone TERM 159 181458 - 181483 + H 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 160 181619 - 181631 + H 76 -10.5 -3.28712 | GTTGTTGATGTCGCG CGCCG TCA CGGCG TTATAGCAAACCAGC Avi_8248 181933 - 182286 + | transposase Avi_8249 182348 - 184009 + | transposase TERM 161 184047 - 183997 - T 100 -15.6 -3.85698 | gap 1 TGCCGCCCGCATAAA GGCCTCACAATGAGCTCGTCAGA TACTCG TCGGT-GAGCTCATCGTGAGGCC CCAAAGGCAAAACTA virA 186821 - 184278 - | two component sensor kinase TERM 162 184354 - 184365 + g 70 -3.6 -4.56597 | opp_overlap 184362 TAGGCGAGCGTCTTG GCTG AAAT CGGC TTTTTCAAAAAACGG TERM 163 184394 - 184378 - G 83 -5.7 -5.00616 | overlap 184362 184379 184380 GGCTTTTTCAAAAAA CGGGCAG ATC CCTCCCG ATCCGCCGAAAGGGG virH1 188221 - 187013 - | P-450 monooxygenase TERM 164 188467 - 188482 + H 77 -8.2 -4.14511 | overlap 188458 GGAGCGCAGCCTGAT CGGCGG ATTT TCGCCG TTTTCGGATAGGCTT Avi_8253 188557 - 189786 + | phage integrase family protein tnp 189783 - 190805 + | transposase TERM 165 191137 - 191164 + T 70 -10.7 -2.70936 | gap 1, opp_overlap 191134, overlap 191130 191134 191132 TGGTTTAAGTTATGC TGCCATAGCTGG TTCGT CCAGC-ATGGCA TAGTATCGTTCCTCG tnp 191570 - 191202 - | transposase Avi_8256 192522 - 191686 - | reverse transcriptase-like protein TERM 166 191905 - 191944 + g 71 -10 -3.48276 | opp_overlap 191911, overlap 191891 191890 191908 CGGTTCCGGGACCCT GAACCATTTCCGCATCAA GGGT TTGATGCGGGATCGGTAC TTGTGTCCCAGCCAA TERM 167 192370 - 192403 + g 74 -6.8 -4.3739 | gap 1, opp_overlap 192379, overlap 192371 AAAGTCGTCAGCGTA TCGGCAATAGGCAAC GGCCG GTTTCC-ATTGCCGG TTTTCTCGAACCGTA Avi_8257 192974 - 192645 - | integrase/recombinase Avi_8258 193862 - 192978 - | transposase Avi_8259 194823 - 194083 - | integrase/recombinase Avi_8260 195790 - 194813 - | integrase/recombinase Avi_8262 196767 - 195790 - | integrase/recombinase TERM 168 197058 - 197038 - R 71 -11.1 -2.90901 | opp_overlap 197033 ATATCTCCAATCACA GGCCCGACA CCG TGCCAGGCC AGGTGATCAATTTAT Avi_8264 197853 - 197080 - | 18S rRNA intron 1 protein TERM 169 197166 - 197116 - G 70 -4.1 -4.66318 | gap 2, opp_overlap 197083, overlap 197117 197132 197162 AGGAGCCCAACAAAA CCGCCCCTGCAACCAAGCACTGT GCATTTT ACAGCGCT-GGTCATAAGGG-GG TTTATGGTCAGCGGA TERM 170 197193 - 197162 - G 100 -21.8 -3.28924 | overlap 197116 197117 197189 CAGCGCTGGTCATAA GGGGGTTTATGGTC AGCG GACCATAAACCCCC TTGCGGAACACCCTC Avi_8265 197920 - 198693 + | hypothetical protein Avi_8266 199241 - 198912 - | hypothetical protein TERM 171 199371 - 199321 - H 100 -15.6 -3.85698 | gap 1 TGCCGCCCGCATAAA GGCCTCACAATGAGCTCGTCAGA TACTCG TCGGT-GAGCTCATCGTGAGGCC CCAAAGGCAAAACTA Avi_8269 200377 - 200997 + | protein 6b Avi_8271 202619 - 201537 - | D-vitopine dehydrogenase TERM 172 201820 - 201840 + g 75 -5.3 -4.65838 | AATTCCTTCCACTCG GTGGCCTGG CCG CCATACCAC TTTTTAGAATATGTG TERM 173 202396 - 202382 - G 70 -2.1 -4.84359 | overlap 202390 GTACCGTTAGAAAAA TGAAC TCAGC GTCCA AGATTGCCGCTTCAA Avi_8272 203032 - 203541 + | insertion sequence ATP-binding protein tnp 203849 - 204409 + | transposase Avi_8275 205056 - 206207 + | ATP-dependent DNA ligase Avi_8276 206633 - 206271 - | hypothetical protein Avi_8278 207335 - 207958 + | virP tnp 209580 - 208159 - | transposase Avi_8280 209856 - 210158 + | hypothetical protein Avi_8282 211389 - 210169 - | transposase for insertion sequence element isrm3 tms2 215015 - 213627 - | indole acetamide hydrolase TERM 174 213918 - 213902 - G 74 -2.1 -4.99947 | overlap 213905 CTGAAGGAAATAAAA CAGCGTC AAG GCCGTTG GAGGAGTAATAATTC TERM 175 216094 - 216068 - g 70 -2.3 -4.74504 | gap 1, overlap 216069 ATTCGAAGCCAAAAA CGTG-GTGGG AGGTAGAG CCCACACACA CTTCTTCAAAGGCGA TERM 176 217348 - 217312 - g 90 -10.1 -4.66163 | opp_overlap 217304 ACGTCTATTCAAAAA GGCTTTTCTTTCAGCCG CTT CGACTGAACGGAGAGCC TGATGGACGTGTCTG tms1 215346 - 217517 + | tryptophan 2-monooxygenase Avi_8291 219702 - 218818 - | transposase istA 220458 - 219847 - | IS21 family transposase ipt 221625 - 222335 + | isopentenyl transferase Avi_8295 223242 - 222853 - | D-vitopine dehydrogenase Avi_8296 223786 - 223484 - | D-vitopine dehydrogenase Avi_8298 224691 - 225107 + | hypothetical protein traR 225950 - 225258 - | transcriptional regulator noxA 227568 - 226174 - | D-nopaline dehydrogenase TERM 177 227727 - 227694 - R 80 -11.6 -3.40558 | opp_overlap 227717, overlap 227692 227713 GAGACAGTCGAAACA CACGCCCATGCCGC AGTAAG GCGCCCTGGGCGCG CCGCTTACCGGGGTC noxB 228921 - 227851 - | D-nopaline dehydrogenase TERM 178 227924 - 227904 - G 75 -11.8 -3.30635 | opp_overlap 227915 TAAAGGGGTCGAGAA CCGCCGGC CAATC GCCAGCGG CAATCGCTTCGGCTA TERM 179 228477 - 228498 + g 71 -13 -2.59475 | overlap 228476 TCGCTACCTTGTGAA GCGCTCCG AGCAGC CGGAGCGC ATTGATGTGTCCGTC TERM 180 228547 - 228565 + g 73 -3 -4.8048 | overlap 228542 228549 228550 ACCTACCACGTCCGG GCCGATGC CCG GCATCATC TTTTTCATCTGAGCA TERM 181 228723 - 228708 - G 100 -9 -5.14563 | GCCGGGAGTAAAAAA GAGGCA TCTC TGCCTC GTCCGAAAGCTCACT Avi_8304 229787 - 228990 - | ABC transporter attA2 230641 - 229784 - | ABC transporter membrane spanning protein (mannopine) TERM 182 230475 - 230452 - G 72 -4.6 -4.63932 | gap 1, opp_overlap 230452 230470 GAGTTCGGAAGAAAA TCTCCGCAAAG TAG CTGT-CGGAGA ATATTTCCCTGTAGT Avi_8306 231681 - 230638 - | ABC transporter nucleotide binding/ATPase protein TERM 183 231783 - 231816 + r 82 -11.7 -3.55582 | gap 1, overlap 231784 GATGAGGGCATAGTG AGCGTCTCCCAGCCAC TTC GTGGC-GGGAAACGCA TTGTGTCCCTGTTAT TERM 184 231784 - 231815 + r 95 -15.2 -2.72626 | gap 1, overlap 231783 ATGAGGGCATAGTGA GCGTCTCCCAGCCAC TTC GTGGC-GGGAAACGC ATTGTGTCCCTGTTA Avi_8307 232862 - 231828 - | ABC transporter substrate-binding protein TERM 185 232552 - 232540 - G 73 -3.3 -4.8667 | overlap 232544 TAGAGGGTAGAAAAA TCGAC GCC GGCGA TCGGGGCGCAGAAGC nocR 232967 - 233869 + | transcriptional regulator LysR family moaD 235884 - 234022 - | ABC transporter nucleotide binding/ATPase protein dppC 236738 - 235881 - | ABC transporter membrane spanning protein (dipeptide) Avi_8312 237688 - 236735 - | ABC transporter membrane spanning protein (oligopeptide) Avi_8313 239393 - 237843 - | ABC transporter substrate binding protein (oligopeptide) TERM 186 239470 - 239446 - H 88 -10.7 -4.0492 | opp_overlap 239462 GAAGCGCTACAGAAA CCGGAAGATAC CAG GTGCCTTCCGG GAGGCTGTCTTAAGC Avi_8314 239982 - 240278 + | uncharacterized NAD(FAD)-dependent dehydrogenase TERM 187 240794 - 240782 - g 76 -6.9 -4.50976 | overlap 240783 TTTCAGATGATAAAA GCGGG CGC CCCAC CAAGGGCGATCGTCG noxA 240275 - 241684 + | D-nopaline dehydrogenase Avi_8317 241677 - 242030 + | Endoribonuclease L-PSP TERM 188 242105 - 242126 + T 100 -11.5 -4.50159 | opp_overlap 242105 ACTGAATAACAAGAA CCCCGCGTT TGCT ATCGCGGGG TTTCTTTCGGTTCAC TERM 189 242126 - 242105 - T 91 -11.5 -4.10566 | opp_overlap 242105 ACTGAATAACAAGAA CCCCGCGTT TGCT ATCGCGGGG TTTCTTTCGGTTCAC TERM 190 242173 - 242186 + T 81 -9.5 -4.07687 | overlap 242152 GCGACGCGGCTAGTG CCGCG CCTC CGCGG TTTTGGAAGCGCCGT hyuB 243891 - 242167 - | hydantoin utilization protein TERM 191 243938 - 243916 - R 70 -10.6 -2.82635 | ACCTCGATGATCATA GTGCCTGTTG CAT CAACACGCAC AGACTGGCCAGGTTC hyuA 245924 - 243894 - | hydantoin utilization protein TERM 192 244194 - 244166 - G 78 -14.7 -2.64803 | opp_overlap 244171, overlap 244163 244162 244171 TGAGGCGCAAATTGA CGACATCAATGGC CCG GCCATCGATATCG TAGCCATATTCATGG TERM 193 245846 - 245862 + g 77 -10.1 -3.81027 | opp_overlap 245848, overlap 245841 245840 ACGAGGTTTTGTAAT GACTGGC CTC GCCGGTC TTTACGTTAATTGCG noxB 247160 - 246018 - | D-nopaline dehydrogenase nocR 247266 - 248156 + | transcriptional regulator LysR family trbI 249524 - 248211 - | conjugal transfer protein trbH 250013 - 249537 - | conjugal transfer protein TERM 194 250028 - 250040 + r 76 -4.1 -5.00196 | TCACCGCCCTCCCCT GGTGA TCG TTACC TTTTGTTGTTTCCAG trbG 250867 - 250013 - | P-type conjugative transfer protein TrbG trbF 251546 - 250884 - | conjugal transfer protein TERM 195 250991 - 251013 + g 85 -15.6 -3.05816 | overlap 250996 CAGTGGCAATGCCGC GGAAGCGGCG TGT CGCCGTTTCC TTGCCTCGCCGATCG TERM 196 250996 - 251008 + g 77 -10.5 -3.93288 | overlap 250991 GCAATGCCGCGGAAG CGGCG TGT CGCCG TTTCCTTGCCTCGCC trbL 252589 - 251561 - | P-type conjugative transfer protein TrbL trbK 252966 - 252739 - | entry-exclusion protein trbJ 253772 - 252963 - | P-type conjugative transfer protein TrbJ trbE 256206 - 253744 - | conjugal transfer protein TERM 197 253967 - 253916 - GR 75 -11.7 -3.07895 | gap 3, opp_overlap 253924 253933 GCCATGTCGAAGAGA CGACGGCC-CTCCG--GCGAGACGAC GTA GTAGTCTCGCTTCGGAATGGCGGTCG CGACGATCTCGATCT TERM 198 254939 - 254923 - GR 70 -5.7 -4.36914 | overlap 254925 GGCTGGCGGATAAAA CGGGCAC GGT GCGACCG CGCTTCCGGACCAGA trbD 256516 - 256217 - | conjugal transfer protein trbC 256913 - 256509 - | conjugal transfer protein trbB 257874 - 256903 - | P-type conjugative transfer ATPase TrbB traI 258509 - 257871 - | autoinducer synthesis protein SEQUENCE gi|222083145|ref|NC_011984.1| Agrobacterium vitis S4 plasmid pAtS4c, complete sequence (length 211620) repA 109 - 1308 + | replication protein A TERM 1 1345 - 1330 - f 82 -7.6 -4.45168 | opp_overlap 1330 CGGCGAAAATAGAAA GTTGTC GGGC GACAAC TTTTACCCCAATGCC TERM 2 1330 - 1345 + F 74 -7.6 -4.08767 | opp_overlap 1330 CGGCGAAAATAGAAA GTTGTC GGGC GACAAC TTTTACCCCAATGCC TERM 3 1760 - 1748 - g 71 -10.5 -3.53012 | opp_overlap 1748 CTGCGCGCTGTGAAA GCCGC CGG GCGGC TTGTCAAAGCGGCCA TERM 4 2086 - 2075 - g 75 -5.8 -4.56597 | GGTGTTTTGGAAAAA GTGC GCAC GCAC CTGCTAGGGCCACTG repB 1391 - 2368 + | replication protein B TERM 5 2406 - 2380 - f 100 -11.6 -5.33405 | CTGAGCAAAGAAAAA GCCCTCCGAAAC AGC GTTCCGAAAGGC CTCTCTCAGTTTGGT TERM 6 2479 - 2465 - f 77 -10 -3.69482 | opp_overlap 2458 2463, overlap 2458 GCAGTCAAGACATAA CTGTCG TTT CGACAG GCGCTTTTGCTTTGC TERM 7 2551 - 2533 - f 80 -11.6 -3.32997 | opp_overlap 2550 CTGCTATAAATGTAA CGACGCCC TTT GGGCGGCG GCCGATGACGCTCGG repC 2556 - 3833 + | replication protein C Avi_9004 4780 - 3839 - | DNA invertase TERM 8 5124 - 5151 + H 75 -5.4 -4.60255 | opp_overlap 5110 5111 ATCCTGCCAGCGCCG GACAGGCTCGCC ATTT GGGGTGGCTGTC TTTTTCGAGCGTTCT exsG 6113 - 7192 + | two component sensor kinase TERM 9 7404 - 7429 + T 100 -9 -5.40004 | opp_overlap 7403 7404 AGTCATAATCGAAAG CCCGGTGC ACCTCCTCCC GCACCGGG TTTTTTCGTTTCCTC Avi_9008 8633 - 7500 - | phage integrase family protein TERM 10 8689 - 8644 - H 89 -13 -3.29511 | gap 1, opp_overlap 8650 8653, overlap 8653 GCCATTTCTTCATAA TGAG-CATAATGTCCGATAAT GCAAG ATTATCGGACATTATTTCTCA CCGACAGGGCGTGCG TERM 11 8650 - 8682 + H 100 -15.2 -3.85698 | opp_overlap 8644 8653, overlap 8653 TCTTCATAATGAGCA TAATGTCCGATAAT GCAAG ATTATCGGACATTA TTTCTCACCGACAGG TERM 12 8679 - 8653 - H 86 -12.5 -3.48684 | opp_overlap 8650 8653, overlap 8644 TCATAATGAGCATAA TGTCCGATAAT GCAAG ATTATCGGACA TTATTTCTCACCGAC TERM 13 8653 - 8679 + H 95 -12.5 -4.06419 | opp_overlap 8653 8644, overlap 8650 TCATAATGAGCATAA TGTCCGATAAT GCAAG ATTATCGGACA TTATTTCTCACCGAC TERM 14 9009 - 9019 + G 83 -8.2 -4.65916 | opp_overlap 9002 GGAAGAAACCGGTAT CCGC GAC GCGG TTTTGTTGACGTCCG TERM 15 9495 - 9507 + G 75 -10.5 -3.63694 | AGTGGACATCGACCG CCGCG CTG CGCGG TTGTTGACCGTCGCT Avi_9009 8746 - 9711 + | hypothetical protein TERM 16 10385 - 10364 - g 100 -15.9 -4.85782 | CGGTTCAAAAAGAAA TCGCCGCCT CGGA AGGCGGCGA AAGCGACGCGGACGA Avi_9010 9973 - 10422 + | hypothetical protein Avi_9011 10786 - 10412 - | hypothetical protein TERM 17 10797 - 10829 + r 91 -11.3 -4.14392 | opp_overlap 10789, overlap 10790 GACATCACGTCACTC CAGATCGAGGGACTG CTT CAGTTCATCGATCCG TTTTGACGCTTCCGC Avi_9013 11003 - 10791 - | Translation initiation factor 2 (IF-2; GTPase) Avi_9014 11140 - 11832 + | hypothetical protein TERM 18 12299 - 12283 - T 72 -5.1 -4.51847 | overlap 12278 AAACAACGGATAAAA CGATCGT CGT ACTATCG CCAGATTACCTAAAC Avi_9019 14274 - 13900 - | transposase Avi_9020 15093 - 14326 - | integrase/recombinase TERM 19 15321 - 15301 - R 71 -11.1 -2.90901 | opp_overlap 15296 ATATCTCCAATCACA GGCCCGACA CCG TGCCAGGCC AGGTGATCAATTTAT TERM 20 15609 - 15578 - R 72 -8.1 -3.87994 | gap 1, opp_overlap 15579 ACGGATCGCGAGAAA CGGCAAT-GGAAAC CGGCT GTTGCCTATTGCCG ATACGCTGACGACTT TERM 21 16174 - 16160 - R 83 -10 -4.14013 | GAAAAGCGTTGAAAA GGCTTG TCT CAAGCC CCAAAGCGCAATTCC TERM 22 16371 - 16327 - R 90 -15 -2.74514 | gap 1, opp_overlap 16344, overlap 16344 TGAAAGGTGCAAGTA CGGTTCGGGGAGGAGAAGCGC ATCT GCGCTTCTCCTCCACTT-CCG ATGGCTCGCGGTTTT Avi_9026 17995 - 17042 - | sensory transduction histidine kinase TERM 23 17404 - 17377 - G 72 -9.1 -3.93136 | opp_overlap 17403 ACAGCGAGCGATAAA GCAGGGCGAGT GCCTCG ATCCGCCCTGC AAGCTGCGCAAACCG Avi_9028 18475 - 18104 - | two component sensor kinase/response regulator hybrid Avi_9030 19432 - 18707 - | hypothetical protein Avi_9035 22341 - 21766 - | transposase IS4 family protein Avi_9036 22726 - 22412 - | hypothetical protein Avi_9037 23098 - 24783 + | hypothetical protein Avi_9038 24776 - 25312 + | hypothetical protein Avi_9039 26138 - 25407 - | transposase TERM 24 25902 - 25921 + g 75 -9.2 -3.90112 | TTTGTCGCCAAGCTT TCCGGCCG ATCG CCGCCGGA TTTCATTGGCAAAGC cvgS 28268 - 26163 - | two component sensor kinase/response regulator hybrid TERM 25 28216 - 28189 - G 81 -12.8 -3.55622 | gap 1, overlap 28190 CCTAACCCCGTGAAA CTCCAGTCGATCG TGT CGATCGACCGG-G CCAGGTCCCCACGCC TERM 26 28216 - 28190 - G 73 -13 -2.73159 | overlap 28189 CTAACCCCGTGAAAC TCCAGTCGATCG TGT CGATCGACCGGG CCAGGTCCCCACGCC Avi_9042 29355 - 28639 - | transposase TERM 27 29060 - 29045 - G 82 -6.1 -4.77567 | ACGTCGAGAACAAAA CCGTC CTGATC GACGG CGCGCCAGAGCCAAT Avi_9043 29999 - 29502 - | hypothetical protein TERM 28 30058 - 30033 - R 84 -7.5 -4.69962 | GAGAGGAAAAAAGAA GCCAACCCTTT GTGG AGAGGGCCGGC AATGTTAACGGACGT Avi_9044 30977 - 30063 - | hypothetical protein TERM 29 30885 - 30869 - G 77 -7.9 -4.26076 | CCAGTCCGACGAAAA CGCCAGC AAG GATGGCG CCCCACGAGACTTTG Avi_9047 31510 - 30995 - | chemotaxis response regulator TERM 30 31103 - 31068 - G 71 -10.5 -3.53091 | opp_overlap 31068 31066 31065, overlap 31074 ACCGCGCGCCGTAAA TGAGAATGGCAGTGT GGGGTG ACACCGCCGCTCTCA TGCTTTTGAATGGAT TERM 31 31599 - 31616 + H 70 -3.5 -4.67234 | gap 1 GGCTGTCATCTTCGA TCATG-TC TTG GATCATGA TTTTTCGACTTCCGT TERM 32 31909 - 31889 - H 70 -11.1 -2.83403 | overlap 31888 CCCGCTGTATCAAAG GCAGACCGC GGC GCCGTCTGC ACAAGAGTATGATTG TERM 33 31962 - 31919 - H 77 -12.7 -2.80074 | opp_overlap 31929 31929, overlap 31916 GTCTGCACAAGAGTA TGATTGACTAGGAAACTTT CCTGAT ATAGTTTCCTTGTCAATCA CTGGAGAGCCCCATG Avi_9049 31975 - 32436 + | Transcriptional regulator Avi_9050 32650 - 32895 + | Phage envelope protein TERM 34 33912 - 33900 - g 75 -10.5 -3.64703 | TCGTTCGCAGCCAAA GCCCC GTT GGGGC ACTCCGGACCGTTCA TERM 35 34170 - 34154 - g 71 -11.5 -3.18681 | opp_overlap 34158 CGGCAAGGTTATCAA CGACGCG CTT CGCGCCG CAGGGCTAATTCGAT Avi_9052 33087 - 34187 + | polyhydroxybutyrate depolymerase Avi_9053 34433 - 35254 + | hypothetical protein Avi_9054 36870 - 35626 - | hypothetical protein Avi_9055 37198 - 36863 - | hypothetical protein TERM 36 37689 - 37711 + G 73 -12.6 -2.72461 | overlap 37688 CCTCGACGCCATCAT CCGCTGGCTC GGC GCGCCGGCGG CTTTGGAAGACGTTC TERM 37 39196 - 39209 + G 71 -8.1 -4.09685 | CGCCAGCTTCGGCTT TGCCC GCGT GGGCA TTTTCCGACGTCCGA Avi_9056 37429 - 39786 + | hypothetical protein TERM 38 39819 - 39794 - T 78 -12.5 -2.94099 | CCGCTTGATCAGAGA GGGTGGAGCAC TCTG GCGCTCCGCCC ACTCCGGCCGACAGA Avi_9057 40578 - 39913 - | hypothetical protein TERM 39 40921 - 40889 - g 88 -11.3 -4.14392 | opp_overlap 40881, overlap 40909 GCGGAAGCGTCAAAA CGGATCGATGAACTG AAG CAGTCCCTCGATCTG GAGTGACGTGATGTC Avi_9059 40715 - 40927 + | Translation initiation factor 2 (IF-2; GTPase) Avi_9061 40932 - 41306 + | hypothetical protein TERM 40 41323 - 41308 - T 70 -6.1 -4.21974 | opp_overlap 41319 GTATCATTCAATAAA GGACG CTCCTT CGTCC GCGTCGCTTTCGCCG TERM 41 41333 - 41354 + T 100 -15.9 -4.85782 | TCGTCCGCGTCGCTT TCGCCGCCT TCCG AGGCGGCGA TTTCTTTTTGAACCG TERM 42 41811 - 41798 - T 83 -5.2 -5.10461 | opp_overlap 41808, overlap 41787 GCGACGCAACAAAAA GGCG GCCAAG CGCC TGCTGGTGGCGTTGA TERM 43 42035 - 41980 - T 82 -7.5 -4.56597 | gap 1, overlap 41960 42010 TTCCGTTTCGAAAAA GGGAACGAACCA-TGCAGGGCCACCG ATCAA CGGGAGCATTGCAACGGTTCGTCTCC ATGCACTCCGCTACC mcpC 43698 - 42169 - | methyl-accepting chemotaxis protein TERM 44 43709 - 43727 + H 88 -11.6 -3.71848 | GTCATCTTTCTAAGT CGGCGCGC GCT GCCCGCCG TTGTTGATGCAACGC Avi_9066 43937 - 44251 + | IS298 transposase OrfA Avi_9067 44322 - 44717 + | transposase Avi_9068 45976 - 45005 - | transcriptional regulator AraC family Avi_9071 47027 - 46632 - | hypothetical protein Avi_9072 47412 - 47098 - | hypothetical protein Avi_9073 47521 - 48102 + | hypothetical protein TERM 45 48480 - 48461 - T 78 -12.2 -2.87132 | opp_overlap 48461, overlap 48463 48465 TGGGTCGCTGAGATA GACATGCC TCCT GGCATGTC TTCTGATCATGCCGC TERM 46 48461 - 48480 + T 86 -12.2 -3.44051 | opp_overlap 48461 48463 48465 TGGGTCGCTGAGATA GACATGCC TCCT GGCATGTC TTCTGATCATGCCGC Avi_9074 48798 - 48487 - | hypothetical protein Avi_9075 48919 - 50595 + | hypothetical protein TERM 47 51061 - 51087 + G 70 -11.7 -2.74605 | gap 1, overlap 51057 51057 ATGCTGGAGATGTCC TCCGGCAA-GTC TAAA GACCTTGCCGGA TACCTTTTCGGCCAC TERM 48 52399 - 52367 - g 75 -10.5 -3.73224 | overlap 52347 CCATGGTCGAGGAAA CCTCAGCCGCGAGCT TCG AGCTGGCAGCGGAAG CGAGAATACTGCAAG mcpC 50659 - 52497 + | methyl-accepting chemotaxis protein TERM 49 52604 - 52572 - f 86 -6.3 -5.08824 | GCCCTACTGAAAAAA TCACCTCCCCT AAGCAGCTAGA AGGGGTGGTGA AATCCAGATGCAGCA mcpA 52940 - 53986 + | methyl-accepting chemotaxis protein Avi_9079 54054 - 54428 + | transposase Avi_9083 58425 - 55855 - | bacteriophytochrome protein agpT 59395 - 58448 - | transcriptional regulator AraC family TERM 50 58701 - 58668 - G 79 -7.3 -4.65153 | overlap 58669 CGAGAGAAATGAAAA CGGCTAAGCCCGGCG ACGG CGGCCAGCTCAGCCA ATCCTATGGTTTCGT TERM 51 58849 - 58876 + g 86 -5.4 -5.03314 | CATGAAGTTCATCGA CTTGAGGCGCCC TTAC GAGCGCTGCGAG TTTTTTGAGCGTCGC TERM 52 59774 - 59749 - H 81 -10.5 -3.59202 | gap 1 GAGCTTCATAGATAA GAGCGGGTCCGA GGT TCA-ACCCGCTC AAGGCAAAGACGGCT TERM 53 60524 - 60507 - g 73 -3.3 -4.77757 | overlap 60501 60509 CGGTAAAAAGCAAAA CCGCAAG CGAC CTCGCCG TCATCCAGGCCGAAA TERM 54 62040 - 62064 + G 74 -6.9 -4.371 | overlap 62058 CCGGCGTCGAGGCAG CCCGGGCCGGC GAA GCAGGCAAGGG TTTTGCTGTCGTCGC mcpC 60362 - 62647 + | methyl-accepting chemotaxis protein TERM 55 62679 - 62704 + F 100 -11.1 -4.7254 | opp_overlap 62680, overlap 62680 GCTTTGACTTCCAGA AGCGGGGATGC TCAG GCATCTCCGCA TTTTTGATACGCCGT TERM 56 62680 - 62703 + F 100 -14.6 -3.43042 | opp_overlap 62680, overlap 62679 CTTTGACTTCCAGAA GCGGGGATGC TCAG GCATCTCCGC ATTTTTGATACGCCG TERM 57 62703 - 62680 - f 83 -12.4 -3.31144 | opp_overlap 62680 62679 CTTTGACTTCCAGAA GCGGGGATGC TCAG GCATCTCCGC ATTTTTGATACGCCG TERM 58 62789 - 62804 + F 82 -9 -4.25104 | AGTGCCGCTGATCTA CCACTG AAGG CAGTGG TTTTCGTGCGGCCAA TERM 59 63484 - 63509 + F 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 60 64414 - 64397 - f 72 -4.8 -4.62336 | overlap 64405 AGGCGAGCCGAAAAA GCCGAA AACGGG CTCGGC CACGCGCCCGCAGCA TERM 61 64424 - 64405 - f 93 -10.6 -4.31329 | overlap 64397 CGAAAAAGCCGAAAA CGGGCTCG GCCA CGCGCCCG CAGCACGCACCGTCG Avi_9093 64855 - 65088 + | hypothetical protein TERM 62 65604 - 65625 + T 74 -2.1 -5.03314 | overlap 65605 GAGATCGGCCTGCCA TTGCGCTTG CTGT CGCGCGCAC TTTTTTCGAGATCGG Avi_9096 67127 - 66774 - | transposition-related protein Avi_9097 67612 - 67124 - | TRm1a transposase Avi_9098 69096 - 67960 - | bacteriophytochrome protein cheB 69665 - 69096 - | protein-glutamate methylesterase TERM 63 69379 - 69401 + g 73 -12 -3.06501 | opp_overlap 69381 69383, overlap 69381 69383 ACTTCCTCGTCAGAC GACAGCGCGA TGG TCGCCCTGTC TTCGATCAACATGTG TERM 64 69577 - 69560 - G 77 -7.7 -4.32034 | GGACGACCACGAAAA CCGGATA TGGA TACCCGG ACGGAAGCGAGGGAA cheR 70495 - 69662 - | chemotaxis methyltransferase TERM 65 69776 - 69734 - G 82 -8.5 -4.4891 | overlap 69735 69769 CTCATGACGAGAAAA CCGCAAC-GTCTCCTTGGAGC CCA GC-CCGAGGAAACCGTTGCGC GGCAGCGCGTCCCTA TERM 66 69775 - 69735 - G 75 -12 -3.28864 | overlap 69734 69769 TCATGACGAGAAAAC CGCAAC-GTCTCCTTGGAGC CCA GC-CCGAGGAAACCGTTGCG CGGCAGCGCGTCCCT Avi_9103 73929 - 70492 - | multi-sensor hybrid histidine kinase TERM 67 71314 - 71304 - G 70 -4.6 -4.56133 | opp_overlap 71304 71309, overlap 71299 71298 CCTCAACAATCAAAA CGCG GCG CACG TTCTGCGATATTTTT Avi_9104 74206 - 74586 + | hypothetical protein Avi_9105 74603 - 75058 + | hypothetical protein Avi_9106 75091 - 75744 + | hypothetical protein TERM 68 75889 - 75872 - g 71 -6.9 -4.14243 | opp_overlap 75871 GACGCTATTCGAAAA GCGTCGG GGAG CCGAAGC ATTGATGAAGCGTGA Avi_9108 75741 - 76172 + | pilT protein, N-terminal Avi_9109 77067 - 76207 - | hypothetical protein Avi_9114 79436 - 79068 - | transposase protein TERM 69 79474 - 79494 + r 72 -5.3 -4.56597 | opp_overlap 79469 79468, overlap 79469 79475 CCGCGAGAACGGCCA AGGGCCTGA TCT TCAGCCCCC TTTTTGCGCCGGAGG Avi_9115 79828 - 79451 - | transposase protein moeB 79930 - 80811 + | molybdopterin biosynthesis protein TERM 70 80816 - 80845 + F 85 -2.8 -5.38047 | opp_overlap 80820, overlap 80820 CTGATAAATAATCAT GATATCCAGAAC GTTGAG GTTCTGGCTGAC TTTTTTCTGTGGGTA Avi_9117 80928 - 81428 + | hypothetical protein pykA 83116 - 81683 - | pyruvate kinase TERM 71 82877 - 82887 + g 71 -6.8 -4.11484 | CCCGTCGGCAATGGT TCCG ATC CGGA TTTTCGGGCCTTGGA Avi_9119 84358 - 83123 - | hydroxypyruvate reductase TERM 72 83469 - 83491 + g 83 -9.8 -4.32857 | opp_overlap 83465 83464 83469 83472, overlap 83465 CCGGAGAGAATGACA GCAGGACCGG AAA CCGGTTCTCC TTTCTGTTTCGCCGA Avi_9120 85476 - 84388 - | tartrate dehydrogenase Avi_9121 86796 - 85498 - | MFS permease Avi_9122 86920 - 87834 + | transcriptional regulator LysR family gntK 88753 - 88238 - | gluconokinase idnO 89671 - 88901 - | gluconate 5-dehydrogenase Avi_9125 91161 - 89674 - | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 73 90831 - 90880 + g 86 -12.2 -4.07885 | gap 2, opp_overlap 90852 CCGGCGATGGATCTA CCTTG-GGTC-GCGGCGAACCCAC GGCG GAGGCTTCGCGGCCGACCGCAAGG TTTTCAAGCACGGTC rbsC 92210 - 91158 - | ABC transporter membrane spanning protein (ribose) TERM 74 92332 - 92303 - R 76 -9.1 -3.74693 | opp_overlap 92303 92321 CTGGATTCTATTAAA GTGGGCGGCTCGC CGAA GCCAGCCGCCAGC GCTGGATTACTTTCC Avi_9127 93454 - 92339 - | sugar ABC transporter (sugar-binding protein) TERM 75 92862 - 92877 + g 71 -10.4 -3.50853 | TCCGGGCCGCCGCTA CCGAGG GCCA CCTCGG TTATGGTTAGCCGCA hyuA 93805 - 95847 + | hydantoin utilization protein hyuB 95913 - 97835 + | hydantoin utilization protein Avi_9130 97851 - 99242 + | aminotransferase Avi_9131 99284 - 100354 + | transcriptional regulator LacI family Avi_9132 101066 - 100905 - | transposase TERM 76 101102 - 101116 + r 77 -2.7 -5.13741 | opp_overlap 101092 101102 TGCAAGTGGCAAAAC GCCTC CATTA GCGGC TTTTTCTTGGGTTCG tnp 102495 - 101338 - | transposase TERM 77 102335 - 102360 + g 75 -9.1 -3.99324 | gap 1 GTCTTACCGCTACTG TCCTGCA-CCAC CAG GTGGCTGTAGGA TTTGTGATAGTCGAC Avi_9135 103074 - 102532 - | transposase Avi_9140 105196 - 104195 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 78 104537 - 104518 - G 78 -8.6 -4.23674 | opp_overlap 104528, overlap 104525 TCCGACCAAGATAAA GTACAACC ACCC GGTTGCAC AGGTGCTTCACGACC dppD 106836 - 105193 - | ABC transporter nucleotide binding/ATPase protein dppB 107954 - 107004 - | ABC transporter membrane spanning protein (dipeptide) TERM 79 107088 - 107073 - G 71 -7.6 -3.99592 | ATTGAGGAGCACAAA GACGAT CGAA ATCGTC ATGATGATGCCAACC TERM 80 108049 - 108020 - R 100 -19.3 -4.66535 | opp_overlap 108021 108023 AATGCCGAAAACAAA TCAGGCGACCGGC AGTA GCCGGCCGCCCGA CGCCTCGTTAACTAA Avi_9144 109584 - 108061 - | ABC transporter substrate binding protein (oligopeptide) TERM 81 109118 - 109132 + g 79 -5.6 -4.77036 | overlap 109119 GCCAGGAGTTGGGTC ACCGTC ACC GACGGG TTTTTCATGATGACC Avi_9145 110845 - 109964 - | transcriptional regulator GntR family TERM 82 111301 - 111284 - g 72 -8.4 -3.79747 | GGACTGACCACGAAA CCCGAG TCTGAG CTCGGG CAGGTCTCCGATTCA Avi_9146 110960 - 111943 + | yurP TERM 83 112076 - 112044 - f 100 -14.9 -3.61178 | GTGAGCGATGCGAAA CTGACCAGCCCCA CGATCTC TGGGGCTGGTCCG AAAGCCACCGAGGCG Avi_9147 112114 - 112980 + | Sugar kinase ribokinase family TERM 84 114299 - 114270 - g 71 -12.9 -2.57881 | gap 1, overlap 114269 GAACTCGCTGAGAAG GCCC-TGAAGTCGG TTG CCGACCCCATGGGC AAGTCGATTGAGGCC hyuA 113085 - 115148 + | hydantoin utilization protein hyuB 115141 - 116841 + | hydantoin utilization protein TERM 85 116865 - 116853 - f 77 -6.9 -4.53439 | overlap 116855 116856 GTAAACGGAAACAAA CAGGC AAG GCCCG GCAGGCAGGTCTCGC Avi_9150 116912 - 117685 + | dinucleotide-utilizing enzyme ilvA 117724 - 118692 + | threonine dehydratase TERM 86 119056 - 119070 + G 72 -5.6 -4.41353 | TGATCATTACCCCCG GAACGC AAG GCGCTC TTTTCCTGTCTGTCG Avi_9152 118728 - 119957 + | Aspartate/tyrosine/aromatic aminotransferase Avi_9153 120104 - 120742 + | hypothetical protein Avi_9154 120739 - 121224 + | hypothetical protein TERM 87 121711 - 121726 + G 72 -6 -4.3467 | ACTGCACGCTTGAAC CGACCG AAGA CGGCCG TTTTGCTGTGCGGCT TERM 88 121803 - 121778 - g 77 -13.3 -2.93073 | gap 1, overlap 121775 GCTGGCGAACAAGCA CG-GGGCGGCAA TCG TCGCCGCCCGCG AGGATCAGCCGTTCG TERM 89 122319 - 122352 + G 74 -12.5 -2.87564 | gap 1, opp_overlap 122318 122319 ACCTTCGAGAAATAC CGCCGCGTCGTGCTTG GCG CAGGCATGAT-CGGCG TCTATGGCAAAATCC dnaE 121509 - 122600 + | DNA polymerase III alpha chain TERM 90 122657 - 122631 - f 100 -8.7 -5.40072 | gap 1, opp_overlap 122633, overlap 122633 TTCGCGCCAAAAAAA TAGGGCCATCGG AATA CCGA-GGCCCTT TAATTGTGAAGGTCA TERM 91 122633 - 122655 + F 90 -11.3 -3.99678 | gap 1, opp_overlap 122631 122633 CGCGCCAAAAAAATA GGGCCATCGG AATA CCGA-GGCCC TTTAATTGTGAAGGT TERM 92 122655 - 122633 - f 95 -11.3 -4.34482 | gap 1, opp_overlap 122633, overlap 122631 CGCGCCAAAAAAATA GGGCCATCGG AATA CCGA-GGCCC TTTAATTGTGAAGGT Avi_9156 123011 - 123358 + | Helicase subunit of the DNA excision repair complex TERM 93 123345 - 123365 + F 81 -12.5 -3.18199 | ATCCTTTCGCCTACG GGCCGGCTC ATT GAGCCGGCG TTGCCTTGCCGCTTG Avi_9158 123569 - 124531 + | hypothetical protein Avi_9160 124737 - 125276 + | hypothetical protein Avi_9161 125291 - 125692 + | hypothetical protein TERM 94 126376 - 126413 + G 71 -11.3 -3.18264 | gap 1, overlap 126385 GGCGCGGCGGCCGGG TGCTGGAACCGGGCATCG GCA CGG-GCCTGTTTCCGGCA TTGATGCCTGAAGAA TERM 95 126786 - 126799 + G 71 -8.1 -4.08216 | ATCGCGGCAATCCGT CTGCC CGAA GGCAG TTTTCGGCGGGATGC TERM 96 128388 - 128402 + G 93 -12.8 -4.18042 | CATCTTCAACTTCCG GGCGCC TCA GGCGCC TTTACTTTGTATGGC TERM 97 129874 - 129844 - g 75 -3.8 -4.81814 | opp_overlap 129851, overlap 129845 129849 AGGAGTACAAGAAAA CCGAAGCCAAGCAG CGC CTGTTTGGCGACGT CCGCGCCGGCAAGGT Avi_9162 125793 - 130886 + | helicase SNF2 family TERM 98 130925 - 130962 + T 95 -9.2 -4.85782 | opp_overlap 130930, overlap 130930 TTGTAGCGGTACCAC GAGAATGGCTATCTCC CGCGAA GGAGGCGGCCATTTTC TTTGTTTTTCAGCCG TERM 99 130930 - 130957 + T 91 -5.5 -5.3167 | opp_overlap 130930, overlap 130925 GCGGTACCACGAGAA TGGCTATCTCC CGCGAA GGAGGCGGCCA TTTTCTTTGTTTTTC Avi_9163 131879 - 131019 - | hypothetical protein TERM 100 133610 - 133620 + G 75 -5.4 -4.58466 | AGCAAACATGGGCTC GGAA GAT TTCC TTTTGTGCTTGTCGC parB 132159 - 133997 + | chromosome partitioning protein TERM 101 134029 - 134057 + F 100 -20.3 -4.19735 | opp_overlap 134025 CTTCCGAATGATCTG CCGCCGCCGATGG TCT CCATCCGCGGCGG TTTCGTTTTCAAACC Avi_9166 134098 - 134568 + | hypothetical protein TERM 102 134637 - 134591 - g 81 -13.1 -3.48276 | gap 1, opp_overlap 134629, overlap 134593 134594 134628 134629 TCTGTCCCCAGACAA TACCGCCG-GCTCTACCCCTGA ATAT TCAGGGGTAGAATTCGGCGTCA GTGCCGATGGCTTTC TERM 103 134635 - 134593 - g 82 -13.5 -3.31726 | gap 1, opp_overlap 134629, overlap 134591 134594 134628 134629 TGTCCCCAGACAATA CCGCCG-GCTCTACCCCTGA ATAT TCAGGGGTAGAATTCGGCGT CAGTGCCGATGGCTT TERM 104 134634 - 134594 - g 85 -17 -2.58822 | gap 1, opp_overlap 134629, overlap 134593 134591 134628 134629 GTCCCCAGACAATAC CGCCG-GCTCTACCCCTGA ATAT TCAGGGGTAGAATTCGGCG TCAGTGCCGATGGCT TERM 105 134722 - 134745 + G 71 -10.2 -3.55444 | GCGGGTTTCTGGCGA GCGCATGGCG TCAG CGCCGTCCGC TTTGCGACCTGACCC Avi_9167 134565 - 135455 + | hypothetical protein TERM 106 135628 - 135644 + G 74 -7.9 -4.14243 | AGGATCACGCTGGAC GCCGTCC GAC GAACGGC TTTTCCAGTCCCATC Avi_9168 135452 - 136147 + | hypothetical protein TERM 107 136563 - 136515 - f 91 -11.6 -4.07568 | gap 1, opp_overlap 136515 CCGCTCTCGGCAAAA CAGGTAAGCGGGCTTCGCAGGGC TATT GCCCCGCTT-GACCGCCCACCTG CTTTTCTCGATCTGG TERM 108 136600 - 136613 + F 71 -9.5 -3.51232 | CGGACCCTGAACCGC CCGGC TTGC GCCGG TTCCTTTCGACCGCA TERM 109 137263 - 137243 - g 82 -14.7 -2.87463 | AATCCCGGCCAGACA CTCGACCGC AAG GCGGCCGAG GCACAGATGGACGCT Avi_9171 136688 - 137287 + | hypothetical protein TERM 110 137297 - 137317 + F 100 -16.9 -4.72272 | GGCTGAGATTTATCC GGCGGAGCA CCT TGCTCCGCC TTTTTCGTGACGAGG TERM 111 137330 - 137354 + F 95 -9.2 -4.99035 | overlap 137331 GCCTTTTTCGTGACG AGGCCGCCTT ACTCC GAGGCGGCCA TTTTTGTGTCACTGC TERM 112 137331 - 137353 + F 88 -12.7 -3.58698 | overlap 137330 CCTTTTTCGTGACGA GGCCGCCTT ACTCC GAGGCGGCC ATTTTTGTGTCACTG TERM 113 137443 - 137410 - f 76 -11 -3.27828 | opp_overlap 137413, overlap 137406 137408 137413 AAAGAAATGAAGAGA GAACGGAACACGGC ATTGCG GCCCCGTCCCGTTC GTCGGACCTGCAGGA TERM 114 137547 - 137591 + F 77 -9.9 -3.57144 | gap 2 GCTCCTGCTTTCGGC CCTCCGCGAC-GG-GGCCGCG ATGGG CGCGGCCTCCTGACAAGGAGG TTTGGACATGACAAG TERM 115 137687 - 137676 - g 71 -7.2 -4.11216 | CGCTGACCTGGAAAA GGGC GTAC GCCC ATGGGTGCAGCCGTG TERM 116 138447 - 138474 + G 71 -12 -2.9176 | gap 1, overlap 138445 GGCGATCTTCAATGC GGCGGCGCATGCG CAG CGC-TGTGTCGCC TATCTGCATGACCTT ardC 137593 - 138525 + | antirestriction protein TERM 117 138661 - 138646 - g 71 -10.4 -3.57462 | opp_overlap 138638 CAGCGCATGGTGAAA TCGGGC TGAT GCCCGA CTGCGCGATCTTCGC TERM 118 138912 - 138939 + G 88 -13.4 -3.67792 | opp_overlap 138911 138910, overlap 138914 GAACTCGTCGAAATC GGGTCTCGCGCG ACAT CGCGCGAGACTG TTTCCATCGGTATGA TERM 119 138914 - 138937 + G 100 -18.2 -3.41836 | opp_overlap 138911 138910, overlap 138912 ACTCGTCGAAATCGG GTCTCGCGCG ACAT CGCGCGAGAC TGTTTCCATCGGTAT Avi_9174 138522 - 139493 + | hypothetical protein TERM 120 139929 - 139958 + F 72 -7.1 -4.1822 | gap 1, overlap 139930 GACGCCTTCGTCTCG ATCGCCT-TGGCCG CAA CGGCCATACGCGAC TTTCTTCCCCTGCCG TERM 121 139930 - 139957 + F 72 -10.6 -3.10611 | gap 1, overlap 139929 ACGCCTTCGTCTCGA TCGCCT-TGGCCG CAA CGGCCATACGCGA CTTTCTTCCCCTGCC Avi_9175 140093 - 140449 + | hypothetical protein TERM 122 140460 - 140483 + F 100 -16 -4.34402 | opp_overlap 140462 CCTGATCACTGCAAC GAGCTCCGCC GAAA GGCGGGGCTC TTTTCGTGTCGCGAG TERM 123 140481 - 140462 - f 70 -10.6 -2.74012 | opp_overlap 140460 TGATCACTGCAACGA GCTCCGCC GAAA GGCGGGGC TCTTTTCGTGTCGCG TERM 124 140504 - 140534 + F 100 -19.7 -4.62069 | GTGTCGCGAGGGAGA GCCGGGCGCAGGC ATCGA GCCTGCTCCCGGC TTTTTGGGGTGCCAC TERM 125 140858 - 140824 - g 78 -14.3 -2.52933 | gap 1, overlap 140823 GCCGAACTCAGGAAT GCCTGCGATCCGGCCG AGCG CCGCCAGATCGC-GGC GGAGCTAGAGATGGT Avi_9177 140770 - 140940 + | hypothetical protein TERM 126 140928 - 140945 + T 75 -11.3 -3.10715 | opp_overlap 140928, overlap 140908 CCGCGTCAGCACGAA GCCTCCT TTCT AGGAGGC TTCCATCATGCTGCC TERM 127 140945 - 140928 - T 77 -11.3 -3.21099 | opp_overlap 140908 140928 CCGCGTCAGCACGAA GCCTCCT TTCT AGGAGGC TTCCATCATGCTGCC TERM 128 140951 - 140976 + T 80 -13.3 -2.53213 | TCTAGGAGGCTTCCA TCATGCTGCCG CTTC CGGCAGCGTGG TCGCTTCAGCCGTTC Avi_9178 141260 - 140982 - | HNS-type DNA binding protein Avi_9182 141655 - 141398 - | hypothetical protein TERM 129 141796 - 141816 + r 74 -11.1 -3.18274 | opp_overlap 141800, overlap 141785 141801 TATGCGCAGGCGCAC CGAACCCGC CAT GCGGTTTCG TTCCATTCGGATAAC TERM 130 141801 - 141811 + r 74 -8.2 -3.95986 | opp_overlap 141800, overlap 141785 141796 GCAGGCGCACCGAAC CCGC CAT GCGG TTTCGTTCCATTCGG Avi_9184 142276 - 141893 - | nuclease protein Avi_9185 142671 - 142273 - | hypothetical protein traG 144638 - 142668 - | Ti-type conjugative transfer system protein TraG traD 144870 - 144625 - | conjugal transfer protein Dtr system TERM 131 144662 - 144679 + gr 73 -11.3 -2.77701 | opp_overlap 144646, overlap 144658 GCCTCCACGCCGATG GCGGTCA AACG TGACCGC TCGTCTTCGTCGCCT traC 145222 - 144845 - | conjugal transfer protein Dtr system TERM 132 145163 - 145190 + gH 100 -16.4 -3.16191 | TGGTTCTCCTTGAGA TTCTGGCGTTGC ACTC GCGACGCCAGAA TTCCTCCGGATGTCA TERM 133 145303 - 145318 + H 70 -10.4 -3.13403 | opp_overlap 145303, overlap 145301 AAGGGCGCAATTATA CGTCGC TGGC GCGACG TCTTGCTCAGACGCC TERM 134 146016 - 146042 + G 73 -11.7 -3.14132 | gap 1 CCATCTGGCCCTCGG CGG-CATCGATC TCAG GATCGATGGCCG TTCCTACAAAAAGCA TERM 135 146822 - 146798 - g 93 -9.9 -4.77165 | TGCTCGACAATAAAA CCGTCTTCGTC ATG GACGAGGCCGG CATGGTGGCCTCGAA TERM 136 148191 - 148167 - g 79 -13.5 -3.14344 | TATTCTGGCCAGCAA GACGGAGCGCG AGG CGCGCCGCGTC GCAGAGGTCAATGTT traA 145321 - 148692 + | Ti-type conjugative transfer relaxase TraA traF 148689 - 149219 + | conjugative transfer signal peptidase TraF traB 149236 - 150447 + | conjugal transfer protein Dtr system traH 150465 - 151091 + | conjugal transfer protein Dtr system traM 151405 - 151713 + | transcriptional repressor traR 152477 - 151773 - | transcriptional regulator TERM 137 152461 - 152476 + g 78 -3.2 -5.10497 | overlap 152463 AGATCGGTCAGCCTG TCCAGC CAGT GCTGCA TTTTTTCACTCCGTT Avi_9196 153658 - 152864 - | hypothetical protein Avi_9197 154812 - 153733 - | ABC transporter nucleotide binding/ATPase protein TERM 138 153801 - 153789 - G 71 -10.5 -3.53563 | opp_overlap 153789 ACAGGTCCGGGGAAA GGCGC ACC GCGCC TGTAGTGAGAGATTG TERM 139 154472 - 154456 - G 72 -5.1 -4.59773 | overlap 154457 CCCGATCTGCAAAAA TCGCG CCGTTTC CGCGA CACGCTGCGCGATCT Avi_9198 155693 - 154815 - | ABC transporter TERM 140 155019 - 155006 - G 78 -6.7 -4.56597 | TGCTGCCCGCAAAAA TCAGC CCGA GCTGA AAGTCGTTCCAGATG Avi_9199 156562 - 155690 - | ABC transporter membrane spanning protein (sugar) Avi_9200 157757 - 156633 - | ABC-type sugar transport system periplasmic component Avi_9201 157922 - 159064 + | transcriptional regulator GntR family Avi_9202 159826 - 160521 + | hypothetical protein TERM 141 161070 - 161085 + T 72 -6.8 -4.25104 | gap 1, opp_overlap 161070 161073 CCAGGCGGTATCAGA CGAGCCG AAA CGGC-CG TTTTGCTCACGCGGC fabG 162000 - 161260 - | 3-oxoacyl-(acyl-carrier protein) reductase Avi_9208 162929 - 161997 - | nucleoside-diphosphate-sugar epimerase TERM 142 163947 - 163974 + H 72 -7.6 -3.86015 | opp_overlap 163935 TGAGGTTGCTGCTCC CCTCGGCGGATG AGAG CATCTGCCCTGG TTTGTCGAAGAGCTA TERM 143 164249 - 164261 + G 79 -6.9 -4.57837 | opp_overlap 164241 164243, overlap 164243 GAAGAATGACCGTCA GTCGC TTG GCGGC TTTTTGGAGCGGTAT tnp 164040 - 165197 + | transposase Avi_9214 165466 - 166023 + | transposase for insertion sequence TERM 144 167803 - 167817 + G 72 -8.6 -3.88787 | GTTCTCACGATCATC GATCTC GCC GAGATC TTTATGGAAATCTAC Avi_9216 167092 - 168162 + | HlyD family secretion protein TERM 145 168541 - 168569 + G 72 -4.4 -4.68593 | gap 1, opp_overlap 168541 CCATTCGTACAGAGA GGCTGGC-GACCG CCAC CGGACTGCTCGCC TTTTTGGATCGTCCC TERM 146 169562 - 169580 + G 73 -13.2 -2.79098 | opp_overlap 169559 169556, overlap 169559 169564 TTTTATGAACGAGGC GATGCGGT GCG ACCGCATC TCGTTGATGCATGCC TERM 147 170641 - 170664 + G 74 -13.8 -2.65264 | opp_overlap 170635 170633, overlap 170651 TCACCAAGAGCCAGG TCGCCGCCGT CTTC GCGGCGGCGG TGCTGTCGCTACTGC Avi_9217 168165 - 170906 + | ABC transporter nucleotide binding/ATPase protein Avi_9218 170909 - 172033 + | ABC transporter TERM 148 172121 - 172104 - f 76 -10.5 -3.32159 | opp_overlap 172101, overlap 172099 TCACACCAAACGCAA CGCCCGA GTGA CCGGGCG AAGGATTTTCTATTC pntA 172654 - 173796 + | NAD(P) transhydrogenase alpha subunit Avi_9220 173793 - 174101 + | NAD/NADP transhydrogenase alpha subunit TERM 149 174523 - 174555 + G 76 -12.8 -3.05384 | overlap 174531 CACTCGCCGGCGCTT TGATCGGGTCGGTC TCTCT GACCGGTTCGATCA TTGCCTGGGCCAAGC TERM 150 174691 - 174713 + G 72 -9.9 -3.71848 | gap 1, opp_overlap 174675, overlap 174701 GTGCGGGTGGCGCCG CAGCACC-CC TCGT GGCGGTGCTG TTCTTCGTCGCCGCG pntB 174105 - 175538 + | NAD(P)+ transhydrogenase beta chain TERM 151 176271 - 176261 - g 86 -5.4 -5.03747 | opp_overlap 176269, overlap 176262 176265 AAAGCGCTGAAAAAA TCCA CCA TGGA GCTCGGCGGTGCCGA TERM 152 176393 - 176419 + G 75 -9.4 -3.86524 | overlap 176394 TCCTCCAAGCGCATG ATCGTCGTCGAC ACC GTCTACGACGAA TTTCTCGACCGCTAT TERM 153 176394 - 176418 + G 74 -12.9 -2.91593 | overlap 176393 CCTCCAAGCGCATGA TCGTCGTCGAC ACC GTCTACGACGA ATTTCTCGACCGCTA attK 175580 - 176971 + | NAD-dependent succinate aldehyde dehydrogenase adhP 176968 - 178011 + | alcohol dehydrogenase TERM 154 178376 - 178343 - T 75 -11.8 -3.03159 | gap 1, overlap 178332 178364 CGAAGCGGTGGAACA GCC-TGGCACGACTT GAAGG AAGCCGCGCCACGGC AGCCTGGGTGAAGGA Avi_9225 179215 - 178928 - | transposase Avi_9227 179709 - 179212 - | transcriptional regulator TERM 155 179679 - 179691 + g 70 -4.1 -4.70117 | GCCGGCTGCTAATAT GTGTA GTT TGCAC TTTCTTTGTTGACTT TERM 156 180716 - 180737 + G 76 -12.9 -3.14564 | GAAGCTGGCGGCGGT CGCGACCGG CGCG CCGGCCGCG TTGCTCGACAGCTAC Avi_9228 179754 - 181268 + | monooxygenase TERM 157 181373 - 181362 - T 77 -7.2 -4.57073 | overlap 181364 CAGGCTGTGCAAAAA CCCC ACCC GGGG GCGCCACCACAGCCA Avi_9229 182365 - 181736 - | transcriptional regulator TetR family TERM 158 182401 - 182367 - H 90 -14.4 -2.82635 | opp_overlap 182350, overlap 182370 ATGGCGACCACCATA CTATGGCGATCACCAT AGT ATGGTGGTCGCCATAT GAGGAGTTCGGCAAT TERM 159 182398 - 182370 - H 100 -16.1 -2.67515 | opp_overlap 182350, overlap 182367 GCGACCACCATACTA TGGCGATCACCAT AGT ATGGTGGTCGCCA TATGAGGAGTTCGGC TERM 160 182463 - 182485 + H 70 -9.8 -3.17075 | GCCGTCTTGGCAATG GGCGCAGCCA GCC TGGTTGCGGC TTCACTTCGCGCGGC Avi_9230 182583 - 183698 + | epoxide hydrolase Avi_9231 184567 - 183824 - | tetR-family regulatory protein TERM 161 184110 - 184062 - G 81 -12.5 -3.53012 | gap 1, opp_overlap 184060 184058, overlap 184063 GCTTCGTTGCGCAAA GCGCCGATCACGTAGGCGGCGA CGGTGT TCACCGCCTGCATGAT-GGCGT CCATGTCCTTGAACG TERM 162 184109 - 184063 - G 86 -16 -2.71712 | gap 1, opp_overlap 184060 184058, overlap 184062 CTTCGTTGCGCAAAG CGCCGATCACGTAGGCGGCGA CGGTGT TCACCGCCTGCATGAT-GGCG TCCATGTCCTTGAAC Avi_9233 184708 - 185838 + | Monooxygenase FAD-binding TERM 163 187158 - 187142 - T 72 -5.1 -4.56597 | overlap 187144 TTCTCGTCTCAAAAA GCCTTCA TAT TGAAGCC GTTCAGCGGAAGTCA Avi_9237 188836 - 188108 - | ABC transporter nucleotide binding/ATPase protein Avi_9239 189540 - 188833 - | ABC transporter membrane spanning protein (amino acid) TERM 164 188936 - 188918 - G 75 -3.9 -4.77896 | GAACTAAGTGAAAAA CAGATTA TGAAG TAACCTG CCGAAGTGATCGCGA Avi_9240 190220 - 189540 - | ABC transporter membrane spanning protein Avi_9241 191073 - 190255 - | ABC transporter substrate binding protein (amino acid) TERM 165 191204 - 191214 + H 77 -3.2 -5.04385 | AGCATGCAAAAATAA CGTT TCA AGCG TTTTTTCCCGGTATG Avi_9243 191370 - 192737 + | hypothetical protein TERM 166 192754 - 192800 + T 72 -6.7 -4.15044 | gap 1, overlap 192759 192782 CGCCGGACGGATGGT TGAGGTTCAT-GGCGACCGCTT TCGG AAGCGGTCGCTGATCAGATTCA TTTCTTCAGCCGACC Avi_9244 193478 - 192798 - | transcriptional regulator GntR family etfB 193815 - 194564 + | electron transfer flavoprotein beta subunit etfA 194588 - 195547 + | electron transfer flavoprotein alpha subunit TERM 167 195753 - 195773 + G 79 -14 -3.06183 | GTTGTCGAACCCGTG GGCGCGCT GCGGA AGCGCGCC TTGGATGCGGGTGCG proC 195555 - 196457 + | pyrroline-5-carboxylate reductase TERM 168 196725 - 196755 + T 76 -3.9 -4.94992 | AGAACCTACAGTTTC GCCTCCGAGACGT TGGCC ACGTTTAGGGAGC TTTTTATAGGTTTAA Avi_9251 197008 - 196892 - | transposase Avi_9252 197317 - 198570 + | phosphonoacetate hydrolase Avi_9253 199517 - 198594 - | transcriptional regulator LysR family Avi_9254 200544 - 200194 - | hypothetical protein trbI 202370 - 201057 - | conjugal transfer protein TERM 169 201124 - 201151 + g 75 -10.6 -3.68183 | overlap 201122 AACCTGTAGCCAGGT TGGATCTCCAGC GTCG GCTGGACGTCCA TGTTTCTCTGTATAG TERM 170 201816 - 201834 + g 71 -8 -4.05033 | GGAAACGCCATTCGT CGTCGCGG CCG CCGTGTCG TTTGTGTCCGCTCCC trbH 202858 - 202382 - | conjugal transfer protein TERM 171 202602 - 202620 + g 70 -12.4 -2.80816 | AGGGCCGCTTCCAGC GCTTGCCC GAA GGGCGAGC TATCCTGCCTCAGCG trbG 203748 - 202858 - | P-type conjugative transfer protein TrbG TERM 172 203647 - 203636 - G 87 -7.2 -4.93877 | overlap 203644 CGTGAGGAAAGAAAA GCCG AAAA CGGC ACGATGACGGCGAGG trbF 204392 - 203730 - | conjugal transfer protein trbL 205603 - 204407 - | P-type conjugative transfer protein TrbL trbK 205818 - 205597 - | entry-exclusion protein TERM 173 205696 - 205660 - G 75 -5.8 -4.58663 | gap 2, overlap 205661 205662 ATCACCGCCGAAAAA GCGCTCTCGATGCTCGCG CTG CGCG-GCACCC-GAGCCC GACGTCCCAGTCGAT trbJ 206624 - 205815 - | P-type conjugative transfer protein TrbJ TERM 174 206582 - 206593 + gr 72 -7.2 -4.25104 | TGGCCGTGATCATAG CGGC GCGC GCCG TTTTAATCGGCCGGG trbE 209064 - 206596 - | conjugal transfer protein TERM 175 207957 - 207982 + gr 76 -7.5 -4.25104 | CGAACCCTTCCGCCT GGATGAGGCGA CGGA TCGCCTCACAC TTTTCCTGAAGGCGC TERM 176 208175 - 208157 - GR 70 -5.9 -4.15222 | opp_overlap 208157 208156 AGCTGGTCGAAGAAA GGCCGCA CCTTC TGCTGCC ATTTCTTGCGGGTGC trbD 209374 - 209075 - | conjugal transfer protein trbC 209771 - 209367 - | conjugal transfer protein trbB 210732 - 209761 - | P-type conjugative transfer ATPase TrbB traI 211367 - 210729 - | autoinducer synthesis protein SEQUENCE gi|222102329|ref|NC_011986.1| Agrobacterium vitis S4 plasmid pAtS4a, complete sequence (length 78730) repA 206 - 1435 + | replication protein A repB 1481 - 2518 + | replication protein B TERM 1 2568 - 2528 - f 70 -6.2 -4.19953 | gap 1, overlap 2534 GACTGAACCGCAAAA GAAAAAGGC-CCCAAAACG ATAC CGTCGTGGAAGCCCTTCTC GATACTAAGCACATC TERM 2 2562 - 2534 - f 93 -3.8 -5.46706 | gap 1, overlap 2528 ACCGCAAAAGAAAAA GGC-CCCAAAACG ATAC CGTCGTGGAAGCC CTTCTCGATACTAAG TERM 3 2710 - 2692 - g 81 -11.6 -3.90949 | AAACAGGAAATATAA CGACGCCC TTT GGGCGGCG ACCGATGACACTCGC TERM 4 2909 - 2886 - g 72 -4.5 -4.59773 | overlap 2889 TTCTATCCGGAAAAA GAACTGCGC CAGGAC GCGCAGCTG GTGGTATTTCCCTCC TERM 5 2906 - 2889 - g 82 -8.4 -4.41633 | overlap 2886 TATCCGGAAAAAGAA CTGCGC CAGGAC GCGCAG CTGGTGGTATTTCCC TERM 6 3426 - 3404 - g 71 -12.8 -2.66733 | overlap 3409 3416 GGGTAATTCAGATGA TGTAAGCACC AAT GGTGCTCACA CAGAGCGCCACATAC repC 2673 - 3887 + | replication protein C Avi_9804 4503 - 4021 - | helix turn helix transcriptional regulator Avi_9805 5581 - 5117 - | hypothetical protein parA 6287 - 5586 - | chromosome partitioning protein TERM 7 6227 - 6238 + g 70 -2.2 -4.72272 | CTCCTGCTAGAAGAA TGAC AGCA GTCG TTTTTCCTGCGCCAC TERM 8 6625 - 6644 + H 70 -4.9 -4.50976 | opp_overlap 6625, overlap 6620 ATTCACATCTAAAAA CCACTCG ACTTAC CGTGTGG TTTTCTCGTGTGACC TERM 9 6644 - 6625 - H 75 -5.6 -4.71061 | opp_overlap 6625 6620 ATTCACATCTAAAAA CCACTCGA CTTA CCGTGTGG TTTTCTCGTGTGACC Avi_9807 6996 - 7397 + | mob protein TERM 10 10154 - 10134 - g 74 -11.1 -3.57418 | overlap 10135 GACGGAGCAAAGGAA GCGCGATCG AGA CGATCGCGA GCGGTGATGGGCCAT TERM 11 10153 - 10135 - g 80 -14.6 -2.73969 | overlap 10134 ACGGAGCAAAGGAAG CGCGATCG AGA CGATCGCG AGCGGTGATGGGCCA traA 7399 - 10161 + | Ti-type conjugative transfer relaxase TraA TERM 12 10393 - 10411 + T 74 -8.8 -3.92592 | CAGGTCGAAGTTTAT CGGCCC TGAGAGC GGGCCG TTTCATATTCAGGCT avhD4 12519 - 10420 - | conjugative coupling protein avhB11 13538 - 12516 - | type IV secretion protein AvhB11 avhB10 14727 - 13519 - | type IV secretion protein AvhB10 avhB9 15536 - 14727 - | type IV secretion protein AvhB9 avhB8 16225 - 15533 - | Type IV secretory pathway component VirB8 avhB6 17289 - 16261 - | type IV secretion protein AvhB6 TERM 13 16869 - 16856 - G 72 -5.9 -4.50583 | overlap 16845 16843 AACATGATCAGAAAA CCGAC CATA GCCGG AAGAACAGAAAAATA Avi_9817 17529 - 17302 - | hypothetical protein Avi_9818 18220 - 17522 - | hypothetical protein avhB1b 19321 - 18233 - | type IV system transglycosylase avhB4 21777 - 19318 - | type IV secretion protein AvhB4 TERM 14 19379 - 19409 + g 71 -11.8 -2.90075 | overlap 19382 GGCTCGTCTCCATAT TGTTCGCGGAGTGC GGC GCACTCCTCGATCG TCTCCTTACGCCCGG TERM 15 19382 - 19406 + g 78 -14.3 -2.69964 | overlap 19379 TCGTCTCCATATTGT TCGCGGAGTGC GGC GCACTCCTCGA TCGTCTCCTTACGCC TERM 16 19907 - 19891 - G 71 -10.1 -3.60098 | overlap 19899 ACTGGTCATGTCAAA GCCGAAC ACC GTCCGGC CAGAGAAGGACAGCA TERM 17 21637 - 21622 - G 75 -5.4 -4.56597 | TTCGGTCTGGAAAAA CAAGCC GTCG AGCTTG ATGACACTGGCGAGT avhB2 22431 - 22081 - | type IV secrection system pilin protein avhB1a 23412 - 22444 - | type IV system transglycosylase Avi_9825 23570 - 24178 + | hypothetical protein TERM 18 24209 - 24242 + G 75 -9.6 -3.84451 | gap 1, overlap 24201 24210 TTATGGCGGCATTGA T-GCCTTCCTGGGCT ATCGC AGCCCCGGAGGGCTA TTTCGATTTAAAGCC TERM 19 24210 - 24240 + G 88 -14.7 -3.50832 | overlap 24201 24209 TATGGCGGCATTGAT GCCTTCCTGGGCT ATCGC AGCCCCGGAGGGC TATTTCGATTTAAAG Avi_9826 24175 - 24714 + | hypothetical protein TERM 20 25368 - 25357 - g 83 -5.8 -4.93365 | TGGCAGAACGAAAAA GCGA AATC TCGC CGCCGTTTGCTGACG Avi_9827 24711 - 25415 + | Micrococcal nuclease (thermonuclease) Avi_9829 25416 - 25796 + | hypothetical protein TERM 21 25840 - 25856 + G 82 -10.1 -4.13767 | GCTCTATATTTTGTC GCCGCAG GTG TTGCGGC TTTTGCCATGACACC TERM 22 25950 - 25935 - g 78 -6.1 -4.58395 | opp_overlap 25936 CGCAGCGTCCAAAAA CCCCT CATGGC AGGGG GTTGGGTACTGCGTG TERM 23 26052 - 26038 - g 87 -12.8 -3.85389 | overlap 26048 TGCGAAGAAGCTAAA GCCGGG AAA CCCGGC CATGAACCTTTTGAA Avi_9830 25801 - 26397 + | hypothetical protein TERM 24 26428 - 26477 + G 80 -9.4 -4.25104 | CCAGAACATTCTACT CGTAA-TCGCTACCGGAGTTGGCA TTGC TGCCGGCTCCGGC-GCAACTTACG TTTTGATGCCGCAGC Avi_9831 26408 - 26833 + | hypothetical protein Avi_9832 27182 - 26850 - | hypothetical protein TERM 25 27330 - 27340 + H 79 -2.4 -5.24531 | overlap 27323 TCACCCACCCGAAGG GCCG CGT CGGA TTTTTTGTAGAAAAT Avi_9833 27576 - 28208 + | Resolvase Protein Avi_9834 29264 - 28344 - | hypothetical protein TERM 26 30243 - 30261 + G 74 -7.4 -4.3534 | opp_overlap 30242 30243 CATCCTCGGGACAAG CCGTCC GCGGAAG GGACGG TTTTAATCGTTGAGA tnp 29463 - 31016 + | transposase Avi_9836 31029 - 31805 + | transposase Avi_9837 32043 - 32372 + | transposase protein tnp 32369 - 33274 + | transposase Avi_9841 35170 - 33821 - | adenylate cyclase protein TERM 27 35216 - 35254 + r 100 -15.2 -4.04394 | opp_overlap 35214 35211, overlap 35217 ATCCGGAGAATGAGG TCGGACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCGC TTTACTTGATTTCCG TERM 28 35217 - 35253 + r 100 -18.7 -3.01914 | opp_overlap 35214 35211, overlap 35216 TCCGGAGAATGAGGT CGGACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCG CTTTACTTGATTTCC Avi_9842 35540 - 35256 - | hypothetical protein copC 36042 - 35563 - | copper tolerance protein TERM 29 36033 - 36021 - G 70 -2.7 -4.77157 | overlap 36010 36022 GGAATGCAGTAAAAA CTACT GTA AGTAA CGTTTTCATTGATTT Avi_9845 36451 - 36182 - | hypothetical protein Avi_9846 36644 - 37321 + | two component response regulator Avi_9847 37308 - 38681 + | two component sensor kinase TERM 30 38759 - 38798 + T 100 -13.6 -4.1958 | gap 1, overlap 38759 GATCACCAGGCGAAT C-TGAACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCGCG TTATTTGATTTCTGT TERM 31 38759 - 38797 + T 87 -13.8 -3.10121 | overlap 38759 GATCACCAGGCGAAT CTGAACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCGC GTTATTTGATTTCTG Avi_9848 39083 - 38799 - | hypothetical protein copC 39585 - 39106 - | copper tolerance protein copA 40967 - 39618 - | multicopper oxidase TERM 32 40085 - 40059 - G 71 -10 -3.53444 | opp_overlap 40059 GTATTTGGCGTCAAA CTCGTAGGCACG CAT CGCGCCGACGGG TATGTCGATGCTGAC TERM 33 40736 - 40764 + g 75 -10.1 -3.7282 | overlap 40724 CACGCTCCACCGGTT CGGCGACCAGGTG GAA CTCCTTGACGCCG TTGTTCATGCGGTGA copB 42441 - 40981 - | copper tolerance protein TERM 34 42306 - 42320 + g 73 -3.4 -4.87133 | overlap 42308 AAACGGTGTCCTTTC CCGTCG CCT CGGCCG TTTTGTTTGAAACGT Avi_9852 42707 - 42438 - | hypothetical protein Avi_9853 43141 - 42755 - | hypothetical protein Avi_9854 43389 - 43733 + | hypothetical protein Avi_9856 43776 - 44204 + | hypothetical protein Avi_9857 44214 - 44552 + | hypothetical protein TERM 35 44549 - 44596 + T 88 -11.4 -3.85698 | opp_overlap 44555, overlap 44554 CGCTAAAATGGCGGC CTGAAAGTTGGGGGAGAGCA CTCTCACA TGCTCTTCCCCAACACTTAG TTTATCAGGCGACAG TERM 36 44554 - 44591 + T 77 -12.1 -2.75997 | opp_overlap 44555, overlap 44549 AAATGGCGGCCTGAA AGTTGGGGGAGAGCA CTCTCACA TGCTCTTCCCCAACA CTTAGTTTATCAGGC TERM 37 44590 - 44555 - T 95 -14.1 -3.53343 | opp_overlap 44554 44549 AATGGCGGCCTGAAA GTTGGGGGAGAGCAC TCTCAC ATGCTCTTCCCCAAC ACTTAGTTTATCAGG Avi_9859 46864 - 44651 - | copper-translocating P-type ATPase TERM 38 44828 - 44816 - G 72 -4.8 -4.67904 | opp_overlap 44816 TATGAAGGCGAAAAA CAGG TTCTG CCTG ATATTGCTCATTGTC TERM 39 45890 - 45940 + g 74 -6.8 -4.28548 | gap 2, opp_overlap 45904, overlap 45879 CGCTCGCGAGCGCTG GGCGTCCGC-A-ACCATGCGGACG ATCTG CGACAGCATGGTATCGCGGCCGAC TTTTCCTGCCTCCAT Avi_9861 47299 - 47015 - | hypothetical protein TERM 40 47518 - 47500 - H 77 -5.9 -4.59773 | overlap 47502 47509 CGGGATGGTCAAAAA CAGGAGG AATAG CCTCCGG CAAAATGGAGTGTAG TERM 41 48070 - 48086 + G 71 -10.1 -3.59979 | TGCTTCAGACTTGCA CGTCGTG CCA CGCGACG TTTCGGGTCAAGACG Avi_9862 47523 - 48107 + | cytochrome C-like protein cueR 48562 - 48119 - | Cu(I)-responsive transcriptional regulator Avi_9864 51058 - 48578 - | heavy-metal transporting P-type ATPase TERM 42 50586 - 50610 + g 79 -12.9 -3.40522 | overlap 50574 50587 TCTCGACGATCCTCG TCGTTGTCCGT GGA ACGGACAGCGG TTATCCTGCGCACCT TERM 43 50587 - 50609 + g 78 -14.2 -2.64099 | overlap 50574 50586 CTCGACGATCCTCGT CGTTGTCCGT GGA ACGGACAGCG GTTATCCTGCGCACC Avi_9865 51414 - 51211 - | hypothetical protein TERM 44 51329 - 51345 + g 75 -9.3 -3.83169 | TCTACGGTGGCGACT GCAGCCG GAT CGGCGGC TTTGATGGCTTTCTC TERM 45 51921 - 51946 + G 76 -11.9 -3.40867 | TTGGGTCGCTCATCG GTTCCTCATGC CCCC GCATGGGGAGC TTGCTTCCTCACTGG Avi_9866 51607 - 51993 + | hypothetical protein TERM 46 52010 - 52063 + F 95 -15.2 -2.66272 | opp_overlap 52011, overlap 52008 CTCACGTCCTTGAAC ACGTCGTCGATTCAGCACGGCCGC AGGTTC GCGTCCGTGCTGTAGCGATGGCGA TCCATTTGACTGAGG TERM 47 52062 - 52011 - f 93 -15 -3.02144 | opp_overlap 52010 52008 TCACGTCCTTGAACA CGTCGTCGATTCAGCACGGCCGCA GGTT CGCGTCCGTGCTGTAGCGATGGCG ATCCATTTGACTGAG Avi_9867 52116 - 52520 + | hypothetical protein TERM 48 52543 - 52576 + G 77 -13.9 -3.01712 | gap 1 GCGCATCATTGCCAC GCTCTCCCTCGCCG CGATCGT CGGCGGGGGAG-GC TATTGGGCCGGGAAG Avi_9868 52517 - 53944 + | Membrane-fusion protein TERM 49 54858 - 54840 - g 82 -10.3 -4.18494 | GACCGTTATCGAAAA CGCCAAG GAAAG CTTGGCG GCGGTACAAAACAGT Avi_9869 53941 - 57102 + | AcrB/AcrD/AcrF family protein Avi_9870 57117 - 57572 + | hypothetical protein Avi_9871 58347 - 57784 - | hypothetical protein TERM 50 58510 - 58471 - R 100 -23 -2.93991 | opp_overlap 58479 58483, overlap 58477 GCCAACCCAATGAGA CCGAAATAGAGGCGCGGC TTAC GCCGCGCCCCTATCTCAG CGGCCCGCCGTGGGT TERM 51 58504 - 58477 - R 100 -19.2 -3.74158 | opp_overlap 58479 58483, overlap 58471 CCAATGAGACCGAAA TAGAGGCGCGGC TTAC GCCGCGCCCCTA TCTCAGCGGCCCGCC TERM 52 58479 - 58502 + r 95 -15.2 -2.87132 | opp_overlap 58477 58471, overlap 58483 AATGAGACCGAAATA GAGGCGCGGC TTAC GCCGCGCCCC TATCTCAGCGGCCCG TERM 53 58515 - 58530 + r 79 -2.4 -5.28176 | overlap 58483 58516 CCCTATCTCAGCGGC CCGCCG TGGG TGTCGG TTTTTTCTCCATCGA Avi_9872 58983 - 58507 - | hypothetical protein TERM 54 59311 - 59342 + r 100 -16.6 -5.38958 | opp_overlap 59331 CTGCCATGCCGGCAG GGGGCCGCTCTG CCTCGAAA CAGGGCGGCCCC TTTTTATTTCTGGGT Avi_9873 59786 - 59346 - | hypothetical protein TERM 55 59564 - 59583 + g 73 -12.8 -2.73364 | opp_overlap 59561, overlap 59561 59576 59578 ATTCTGGATCAACGT CGCCGCCG TTCC TGGCGGCG TCATTCCGCTCGCCG TERM 56 59824 - 59844 + H 77 -6 -4.72029 | CTCCGTCTTCGCCTT CGGGCGGG CGAAC CCCCTCCG TTTTATTCCCTTGCC Avi_9874 59946 - 60419 + | polysaccharide inhibition protein TERM 57 60509 - 60483 - f 71 -10.8 -2.95223 | GAATCGTAGCAGACA CCTTCGCCGCCA AGA TCGCGGTGAAGG ACATCGAGCATAATT Avi_9875 60578 - 61432 + | hypothetical protein TERM 58 61434 - 61408 - T 85 -13.1 -3.14463 | gap 1, opp_overlap 61413, overlap 61395 AACCGTCTTGAGCAA GATCA-GCGGCG CTAG CGCCGCTTGATC CTCCCAACACATTGA TERM 59 61413 - 61428 + T 77 -11.8 -3.21099 | opp_overlap 61408 61395 TCTTGAGCAAGATCA GCGGCG CTAG CGCCGC TTGATCCTCCCAACA Avi_9878 62087 - 61815 - | hypothetical protein TERM 60 62247 - 62228 - H 70 -3.5 -4.62069 | opp_overlap 62231, overlap 62231 CGCCGAGTTGAAAAA CAAGCGG ACAATG CCGCTTT TCAAATAGCCCCCTG TERM 61 62244 - 62231 - H 70 -5.2 -4.42748 | opp_overlap 62231, overlap 62228 CGAGTTGAAAAACAA GCGG ACAATG CCGC TTTTCAAATAGCCCC Avi_9879 62304 - 62609 + | hypothetical protein TERM 62 63138 - 63121 - f 75 -7 -4.4009 | overlap 63130 63133 GGGCAGCGTAGAAAA TGGCGA AATTGA TCGCCA GCAGGACGAACAGCG Avi_9881 63491 - 63730 + | hypothetical protein TERM 63 63910 - 63893 - g 71 -12.7 -2.52896 | GCATGGCCGAAGCGA CAGGCCG CGAC CGGCCTG CGACCCCTGACATGC Avi_9882 63730 - 64164 + | hypothetical protein Avi_9884 64832 - 64503 - | hypothetical protein TERM 64 65581 - 65606 + G 87 -3.9 -5.40464 | opp_overlap 65576 TTGTTAAGCAGGTCG GGTTCCTTTGG GCAC CCAACTGGACC TTTTTGTTTATGGTC Avi_9887 64947 - 66536 + | transmembrane protein Avi_9888 66526 - 67527 + | hypothetical protein TERM 65 67619 - 67595 - T 73 -11.3 -2.75957 | overlap 67586 CATCAAGTGCAATGA GGGGAGCCCCC TTC GGCGCCTCCCC TCAAACTCCCCTTCC Avi_9890 68315 - 67980 - | hypothetical protein TERM 66 68240 - 68208 - G 95 -14.2 -3.66429 | gap 1, opp_overlap 68215, overlap 68198 68214 68215 AACAAGCCTCAATAA GGCAAAGCCGCGCCC TTCG GGGCGCGGTTTT-CC ATCGCGCTCCCGATG TERM 67 68235 - 68214 - G 87 -12.9 -3.85389 | opp_overlap 68215, overlap 68208 68215 CCTCAATAAGGCAAA GCCGCGCCC TTCG GGGCGCGGT TTTCCATCGCGCTCC TERM 68 68215 - 68234 + g 100 -16.4 -4.18494 | opp_overlap 68215 68214 68208 CTCAATAAGGCAAAG CCGCGCCC TTCG GGGCGCGG TTTTCCATCGCGCTC TERM 69 68234 - 68215 - G 87 -16.4 -2.90751 | opp_overlap 68215, overlap 68214 68208 CTCAATAAGGCAAAG CCGCGCCC TTCG GGGCGCGG TTTTCCATCGCGCTC TERM 70 68387 - 68339 - H 70 -11 -2.76696 | gap 1, opp_overlap 68339 68352, overlap 68338 68349 TCTCCGCGCAATAAT GCGCAACCGAT-CAGGTTCGCGG TGGA CCGCGATCCTGTATCCGTCCCAC TTGATATCCCATGAC TERM 71 68352 - 68373 + H 75 -11.5 -2.91383 | opp_overlap 68349 68339 68338, overlap 68339 ATGCGCAACCGATCA GGTTCGCGG TGGA CCGCGATCC TGTATCCGTCCCACT TERM 72 69196 - 69217 + H 72 -10.1 -3.32963 | GGGCAGATCGATCCG GGGAACCGG CTTG CCGGTTCAC TTCTGGAATGAGCGT TERM 73 69225 - 69251 + H 100 -5.7 -5.64274 | opp_overlap 69229, overlap 69226 69227 CGGTTCACTTCTGGA ATGAGCGTCCG AGAAG CGGACGCACGA TTTTTTTATACATAC TERM 74 69226 - 69250 + H 78 -9.2 -3.9748 | opp_overlap 69229, overlap 69225 69227 GGTTCACTTCTGGAA TGAGCGTCCG AGAAG CGGACGCACG ATTTTTTTATACATA TERM 75 69227 - 69249 + H 71 -10.5 -2.97403 | opp_overlap 69229, overlap 69226 69225 GTTCACTTCTGGAAT GAGCGTCCG AGAAG CGGACGCAC GATTTTTTTATACAT TERM 76 69247 - 69229 - H 73 -11.7 -2.71364 | opp_overlap 69227 69226 69225 TCACTTCTGGAATGA GCGTCCG AGAAG CGGACGC ACGATTTTTTTATAC TERM 77 69410 - 69432 + H 72 -10.4 -3.33815 | GCTCCACCCCCTGAC GGGAGCGGGC TGC GCCCTCCCCC TTCGTTCCGCCGGAT TERM 78 70304 - 70314 + G 76 -4.6 -4.82901 | overlap 70296 AGAAGCTGGCAGCGG TGGC CGA GCCG TTTTTGTCGCAAGGC Avi_9896 69538 - 71475 + | transcriptional regulator Avi_9897 71979 - 71437 - | hypothetical protein TERM 79 71742 - 71774 + g 100 -17.8 -3.6471 | overlap 71737 GGTTGTCACCCGCGC CGCCCGTCTTTGGT CCGAT ACCAGAGGCGGGCG TTCTGTCATTTGCAA TERM 80 72220 - 72187 - R 76 -3.7 -4.94487 | gap 1, opp_overlap 72187 72192, overlap 72192 CCAGAAAAGAGAAAA CTGAACCG-CCCCGGC TTT GCCGGAGACCGTTTGG TTTAAGTTATGCGGC tnp 73132 - 72227 - | transposase Avi_9899 73458 - 73129 - | hypothetical protein TERM 81 73536 - 73511 - H 100 -14.7 -3.53012 | overlap 73496 73495 CCGGGGCGGTTCAAA CCGCTCCCGAG AAAA CCCGGAAGCGG TCTGCAAAAAACCAA TERM 82 73625 - 73606 - H 87 -4.3 -5.29445 | gap 1 TGTCAATAAGAAAAA CGCC-TTC TCGGT GAACGGCG AAGCCTTGTCTGGTC TERM 83 73678 - 73664 - g 80 -10 -4.04719 | AGGAGACAGGACAAA TGAGGG AAA CCCTCA CGAACAAGCGGCTAA TERM 84 73758 - 73720 - g 73 -12.4 -3.08869 | ATGACAAAGGAGAGA GCCGAGTTCCGGCGACTG GCA CAGTCAACGGAAGTCGGA ACGGTGACGCGCGGC TERM 85 73889 - 73859 - g 88 -16.1 -3.04461 | opp_overlap 73887 CAGTGATCGTCAACA CCGCCCGGGCCGA CGCCT TCGACACGGGCGG GCGACCCATTGTATT repC 73663 - 74943 + | replication protein C exoI 74940 - 75446 + | succinoglycan biosynthesis protein TERM 86 75764 - 75792 + F 77 -12.3 -2.7814 | overlap 75763 75786 75787 CCTTCCAGCCTCCTC CGCTGCGCTTCGG CCT CCGGTGCGCACCG CTTTCCGCTGTGCCT Avi_9904 75848 - 76183 + | hypothetical protein TERM 87 76214 - 76196 - f 82 -11.7 -3.48924 | TGATTGCGCAGAGAA GCCCGGT TCATG ACCGGGC ATCTCACCCCGAAAA TERM 88 76224 - 76271 + F 70 -10.2 -3.14878 | gap 2, opp_overlap 76230, overlap 76222 76229 76230 CCGGGCATCTCACCC CGAAAAG-GCTGAAAATCC-GC CAAATA GCTGGATTTTTGGCCCTTTTCG TGTTAGGTTCAACAG TERM 89 76229 - 76265 + F 70 -4.5 -4.44284 | gap 1, opp_overlap 76230, overlap 76224 76222 76230 CATCTCACCCCGAAA AGGCTGAAAATCC-GC CAAATA GCTGGATTTTTGGCCC TTTTCGTGTTAGGTT Avi_9906 76304 - 76510 + | hypothetical protein TERM 90 76541 - 76562 + F 100 -15.9 -5.24551 | CTCAAGAGGCTCAAG GCCGTCTGC TCGC GCAGACGGC TTTTTGTTGGTTTAC Avi_9907 76580 - 77644 + | cell filamentation protein ardC 77873 - 78730 + | antirestriction protein SEQUENCE gi|222106127|ref|NC_011988.1| Agrobacterium vitis S4 chromosome 2, complete genome (length 1283187) repA 287 - 1549 + | replication protein A TERM 1 1591 - 1560 - g 77 -2.3 -5.07053 | gap 1, opp_overlap 1568, overlap 1568 AATGATTGGAAAAAA CCGAAAA-AGCGAG TTGCG CGCGCTGTTTTCCG ATCCAGGATCGGGGG TERM 2 1580 - 1568 - g 80 -4.7 -4.95854 | opp_overlap 1568, overlap 1560 GAAAAAACCGAAAAA GCGAG TTG CGCGC GCTGTTTTCCGATCC TERM 3 2224 - 2213 - g 83 -5.8 -5.00616 | TTTCGGTGCAAAAAA GCGA GTTG TCGC GGCTTATTCAGGTCG TERM 4 2589 - 2604 + G 76 -11.8 -3.34398 | overlap 2587 CGAAACGCGTCTGGC GGCGGC TTAT GCCGCC TATTTGGACGGCGAA repB 1546 - 2628 + | replication protein B TERM 5 2638 - 2659 + F 88 -12.3 -3.58536 | GACTAGAATGGGTTT GCATCCGGC TTTT GCTGGATGC TTTAGACCTGCATTT TERM 6 2852 - 2824 - f 100 -4.6 -5.60689 | gap 1, opp_overlap 2847 CGAGACAAGAAAAAA GGC-CCCAAAACG TCAC CATTTCGGAAGCC CTCTTCTATGTAGCA TERM 7 3830 - 3840 + G 71 -8.2 -4.04188 | GCGCGAGCTGGATGG CCGG GAA CCGG TTATTGTCTTTCCGT TERM 8 4436 - 4426 - g 70 -4.6 -4.51097 | opp_overlap 4426, overlap 4428 GCAATGATCATAAAA CAGC GGA GCCG GTTTCACCTCCTCTC repC 3579 - 4796 + | replication protein C Avi_5003 5079 - 6632 + | phospholipase/phosphatidylserine synthase TERM 9 6658 - 6685 + T 100 -15.8 -4.96848 | overlap 6644 6653 TGAGCCCCACCGAGA GCTCTTGTGATT GGTA AATCACAAGAGC TTTTTCTATGGCGAG Avi_5004 7689 - 6736 - | hypothetical protein Avi_5005 7754 - 8491 + | hypothetical protein TERM 10 8572 - 8608 + T 70 -7.3 -4.08216 | opp_overlap 8578, overlap 8573 TGGGTGGGTTCATCT GTGAAATGCGAAGGG ATATCCA CCCCTCGCATTTCGA TTTTCCCACGGATGA TERM 11 8573 - 8607 + T 72 -10.8 -3.04715 | opp_overlap 8578, overlap 8572 GGGTGGGTTCATCTG TGAAATGCGAAGGG ATATCCA CCCCTCGCATTTCG ATTTTCCCACGGATG TERM 12 8602 - 8578 - T 71 -9.3 -3.55444 | opp_overlap 8573 8572 GGTTCATCTGTGAAA TGCGAAGGG ATATCCA CCCCTCGCA TTTCGATTTTCCCAC Avi_5006 9459 - 8635 - | hypothetical protein TERM 13 9295 - 9305 + g 77 -2.4 -5.03314 | GGGTCTGGCGATGAT CCAG GCG CGGG TTTTTTCCCAATGCG Avi_5007 9913 - 10218 + | hypothetical protein TERM 14 11073 - 11101 + G 74 -12.5 -3.01712 | opp_overlap 11065 GGCAATACCGCTCCA GCGCTGGCAATCA TCT TGATTGCTATCGC TCTTGCGGAACGCGA exoD 10581 - 11219 + | exoD protein Avi_5010 11717 - 11250 - | transcriptional regulator AsnC family nocP1 11880 - 12659 + | ABC transporter nucleotide binding/ATPase protein TERM 15 13173 - 13144 - g 80 -5.1 -4.98436 | gap 1, overlap 13138 13147 13148 CGAATATTACAAAAA GTATTTTGCCAAGG TGG CCTCGG-AAAAGAC CTATCAAACGCTGGA Avi_5014 12704 - 13474 + | ABC transporter substrate binding protein (amino acid) Avi_5015 13491 - 14213 + | ABC transporter membrane spanning protein Avi_5016 14222 - 14911 + | ABC transporter membrane spanning protein TERM 16 15401 - 15391 - g 83 -8.2 -4.58283 | opp_overlap 15391 15393, overlap 15392 15393 GAAGCCGTTCAAAAA GCGG TTG CCGC AACAGGCAAGCCCTT Avi_5017 14929 - 15834 + | S-methyltransferase Avi_5018 16827 - 15844 - | ABC transporter membrane spanning protein (iron (III)) TERM 17 16835 - 16797 - G 78 -11 -3.67296 | overlap 16833 CAGCACCCAGCGAAA TGCCGGCACTGACGACGA CGA TAATCGTCAGAACCAGCA GGATCGGCACAGATA Avi_5019 17832 - 16873 - | ABC transporter substrate binding protein (iron) Avi_5021 19009 - 17855 - | ABC transporter nucleotide binding/ATPase protein (iron) TERM 18 17897 - 17880 - G 70 -2.6 -4.86621 | overlap 17882 AGCGCGAAGGAAAAA TTGCGG GTGGCG CCGCCA TCCAGGCTGTGGACA TERM 19 18397 - 18425 + g 71 -13.2 -2.57564 | gap 1, overlap 18396 CCTGGACTACGACGG CGATCCGGCGGGC GACC GTCCG-CGGATCG ATTGTCCACACATCC TERM 20 19144 - 19099 - R 95 -12.8 -4.0098 | gap 1 GGTCAAGCTAAAGAA TGTGGATTTGTTCGG-TTGGC TTGGT GCCAAGCCGAACAAATCCGGA CCAAGCTTTACGGTT Avi_5022 20637 - 19201 - | amidohydrolase TERM 21 20311 - 20335 + g 81 -12.2 -3.65812 | gap 1 GTGGCCGCAGCCATG GCCG-TTGCCG CCTG CGGCAATCGGC TTATGTTCAGCGACG TERM 22 20701 - 20671 - R 95 -15.6 -2.72227 | opp_overlap 20676, overlap 20661 20676 AACACCCGCCAACCA TAAAAGCTTGGCGC TCA GCGGCAAGCTTTTA TCCGCTGTTTTACCA TERM 23 20696 - 20676 - R 95 -11.1 -4.5442 | opp_overlap 20676, overlap 20661 20671 CCGCCAACCATAAAA GCTTGGCGC TCA GCGGCAAGC TTTTATCCGCTGTTT TERM 24 20676 - 20696 + r 93 -11.1 -4.43221 | opp_overlap 20661 20676 20671 CCGCCAACCATAAAA GCTTGGCGC TCA GCGGCAAGC TTTTATCCGCTGTTT TERM 25 20759 - 20783 + r 90 -12.9 -3.54436 | AGTCATCCGGAAGGC CTGCTCTTCTG CTT CAGGAGAGCGG TTCTGTGCGTGTGTC Avi_5023 21050 - 20772 - | hypothetical protein glgA 22552 - 21047 - | glycogen synthase Avi_5025 22941 - 22624 - | hypothetical protein TERM 26 22765 - 22801 + g 85 -11.4 -4.09739 | gap 1 AGTTTGCGTTTTGGC GGCC-TGGCTCGCGCGC TTGA GCGCGCCTGCCTTGGCC TTTTGCGCAGATTGC Avi_5027 23186 - 23527 + | hypothetical protein TERM 27 23578 - 23555 - T 77 -8.2 -4.07568 | GGCGGTTGGCCAAAA GTTGACAGGT TGAC ATCTGTCAAC GCCGACTGAGGGGCC Avi_5028 24220 - 23627 - | hypothetical protein TERM 28 24255 - 24275 + H 71 -2.5 -4.99435 | CCTCATGAGACTCCT GTCCGGG TGATGGT TCTGGAC TTTTTGCTTGTTGCG TERM 29 24859 - 24882 + G 76 -4.4 -4.72272 | overlap 24865 ACCTTCGTGATCTTT CCTTTGCTCG GCCT CGGGCTGGGG TTTTTCGTGCAGGGC TERM 30 25469 - 25439 - g 93 -11.1 -4.63218 | gap 1, opp_overlap 25439 25438, overlap 25441 GCGGCTCGAAGAAAA GC-CTGGCCTCCGG CGTG CCGATGGCCAGCGC GATTTTTGCCGGGCA TERM 31 25466 - 25441 - g 71 -12.5 -2.62244 | opp_overlap 25439 25438, overlap 25439 GGCTCGAAGAAAAGC CTGGCCTCCGG CGTG CCGATGGCCAG CGCGATTTTTGCCGG Avi_5029 24625 - 25617 + | hypothetical protein TERM 32 25658 - 25633 - T 89 -13.3 -3.35813 | CGCCATTCTAATCAA GGCGAGGATGC TCGT GAATCCTCGCC TTGAAAGCACATTCA Avi_5030 26702 - 25671 - | zinc-binding dehydrogenase Avi_5031 27660 - 26713 - | 2-hydroxyacid dehydrogenase TERM 33 27908 - 27944 + G 71 -12.9 -2.68532 | opp_overlap 27906, overlap 27901 GCGATGAAGCTAAGC TTGCCGCCGCCGCCG CCCGGAT CGGCGACGGCTGCGA TAGTCTGGCTTTCGA idnO 27769 - 28527 + | gluconate 5-dehydrogenase TERM 34 28751 - 28730 - g 73 -12.3 -3.01924 | opp_overlap 28725 28724 GATGCGGTCGGAACA CGCCTTGCC GGGG GACAAGGCG TGACCATTATCGGGT gntK 28529 - 29032 + | gluconokinase garR 29035 - 29919 + | 2-hydroxy-3-oxopropionate reductase Avi_5036 29919 - 30251 + | hypothetical protein TERM 35 30270 - 30290 + F 73 -9.6 -3.57144 | GGCGCTCGTCGGGTC CCCTCCCC TGTTT GGGGTGGG TTTGCCGATGGGAAA Avi_5038 30378 - 31391 + | transcriptional regulator LacI family TERM 36 31424 - 31399 - T 100 -16.2 -3.69354 | opp_overlap 31396 31395 GTCTATAATGGTAAA GCCATGCGCC GGTGAA GGCGCATGGC AGGGTTATCAGCTCA Avi_5039 32531 - 31437 - | ABC-type sugar transport system, periplasmic component Avi_5041 33628 - 32570 - | ABC transporter membrane spanning protein (sugar) Avi_5042 35141 - 33645 - | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 37 33755 - 33738 - G 77 -7.7 -4.36914 | opp_overlap 33744, overlap 33740 TTGGCCGCGAGAAAA TACCAGC GCCC GCTGGCA GATATGGGCGATTTC TERM 38 35755 - 35766 + H 71 -2.2 -4.91109 | overlap 35747 CGTTTGGGGTCGAAC TCAG CGAC CTGG TTTTTATCATAGCGG TERM 39 36211 - 36269 + H 100 -18.5 -3.09058 | gap 1, overlap 36202 36212 36214 AAGGAGGCGTTTCTT GCGCTGTTGACAGCTGTCAACGTCAG AAAATGCG TTG-CGTTGACAGCTGTCAACAGTGA CTTTCTGTCTGCTGT TERM 40 36212 - 36270 + H 85 -10 -4.16301 | gap 3, overlap 36202 36211 36214 AGGAGGCGTTTCTTG --CGCTGTTGACAGCTGTCAACGTCAG AAAATGCG TTG-CGTTGACAGCTGTCAACAGTGAC TTTCTGTCTGCTGTA TERM 41 36214 - 36266 + H 100 -21 -2.74987 | gap 1, overlap 36211 36212 GAGGCGTTTCTTGCG CTGTTGACAGCTGTCAACGTCAG AAAATGCG TTG-CGTTGACAGCTGTCAACAG TGACTTTCTGTCTGC Avi_5044 36674 - 37006 + | hypothetical protein TERM 42 37130 - 37098 - f 70 -10 -3.19522 | gap 1, opp_overlap 37103, overlap 37118 TGATTCAAGATGCAA CAGGATGATGCGTGT GAAA AC-CGCATCATGCTG TAAGCGCATTCGGTC TERM 43 37783 - 37751 - f 88 -10.5 -4.07687 | opp_overlap 37750 37749 ATTGCCCTGGCAAAA GCTTGTTCTGCCGCT CGC AGCGGCAGGTGAAGC ACTTGTGCGTCTGGA Avi_5045 37788 - 38825 + | hypothetical protein TERM 44 38843 - 38861 + F 75 -11.8 -2.83894 | opp_overlap 38840 38843 38845, overlap 38845 GTGCAGTGGAAAGCA TATGCTGC AAT GCAGCATA TATAATACTACTAAT TERM 45 38861 - 38843 - f 75 -11.8 -2.92613 | opp_overlap 38843 38845, overlap 38840 38845 GTGCAGTGGAAAGCA TATGCTGC AAT GCAGCATA TATAATACTACTAAT TERM 46 38920 - 38935 + F 91 -5.4 -5.40072 | opp_overlap 38920 ATGAATTTAAGCAGA CGTCAT GGAG GTGACG TTTTTTTGGGAGGAC Avi_5046 38955 - 39917 + | ABC transporter substrate binding protein (ribose) TERM 47 39963 - 39931 - f 72 -11.2 -3.03038 | gap 1, opp_overlap 39926 39925 39956, overlap 39926 GATATCCAAACCAGA CCGCGTCCGGTTGCA GATA TGCG-CCGGGCGCGG ATTGCCCTTTTATCG Avi_5049 40001 - 41539 + | ABC transporter nucleotide binding/ATPase protein (ribose) Avi_5050 41536 - 42576 + | ABC transporter membrane spanning protein (ribose) Avi_5051 42573 - 43553 + | ABC transporter membrane spanning protein (ribose) Avi_5052 43550 - 44278 + | transcriptional regulator TERM 48 44302 - 44333 + T 100 -16.1 -3.50853 | opp_overlap 44323 CTCCAAGGCGGGTGT GATGGCATGCATT TTTGAC AATGCATGCCATC TTGTCATTCAACCCA vdh 45802 - 44354 - | vanillin: NAD oxidoreductase vdh 47408 - 45882 - | vanillin: NAD oxidoreductase TERM 49 46523 - 46503 - G 78 -6.7 -4.66163 | ACCCTGATTGAAAAA CGCCCCGAA GGT TGCGGCGCG GGCGGCCTGTTCGAG TERM 50 47154 - 47134 - G 71 -11.1 -3.21276 | overlap 47132 GCTTGTTCCAGAATA GTCTTGCGC ATG GCGCAAGGC GATGCTGACCAGCCA TERM 51 47467 - 47483 + H 90 -7.9 -4.88388 | opp_overlap 47467, overlap 47469 ACCATTGATCCGAAA CCGCCTG TTT CAGGCTG TTTTTCTGGAATTCT TERM 52 47469 - 47481 + H 81 -9.1 -4.05669 | opp_overlap 47467, overlap 47467 CATTGATCCGAAACC GCCTG TTT CAGGC TGTTTTTCTGGAATT Avi_5055 47628 - 48527 + | transcriptional regulator AraC family TERM 53 48599 - 48573 - T 76 -12.5 -2.62983 | opp_overlap 48564 48562 48560 TGCATCTGGAGAGCA TTTCAGCGTTT AACGG AAACGCTGAAA TGCGACACATGATAT Avi_5056 49390 - 48665 - | hypothetical protein ilvD 51144 - 49408 - | dihydroxy-acid dehydratase TERM 54 49824 - 49801 - G 72 -9.4 -3.76224 | GCCCCATTCAGGAAA GCCCGGCCCC CCCA GCGGCCCGGC ATTGCGCAACACCAG Avi_5058 52057 - 51188 - | ABC transporter permease protein TERM 55 51383 - 51364 - G 75 -10 -3.72576 | overlap 51365 CCTGTCCCGAGGAAA CGCCGAAC ACCA GTTCGGCA GCAATCAGCGTGCGC TERM 56 51756 - 51724 - G 70 -12 -2.73364 | TGTTGATGGCAAGCA CTGTCAGCAGCGCG GCAAG CACGGTGCCGACAG TATAGCCCATGAACA ssuB 52877 - 52062 - | ABC transporter nucleotide binding/ATPase protein (nitrate/sulfonates) TERM 57 52482 - 52504 + g 71 -7.6 -4.07568 | opp_overlap 52472 ATAATGGCGGGCCAG TGCCTCGGCT TCG GGCCTGGGCA TTTTACGGGCGACGA TERM 58 53055 - 53029 - R 93 -12.3 -3.9377 | opp_overlap 53041, overlap 53030 ACAAGCCTAAGGAAA GTGCAGCGGCA GGCGA TGCCGCTGCAT GGCGCGGCGCGGCTC TERM 59 53054 - 53030 - R 95 -15.8 -2.95539 | opp_overlap 53041, overlap 53029 CAAGCCTAAGGAAAG TGCAGCGGCA GGCGA TGCCGCTGCA TGGCGCGGCGCGGCT Avi_5060 54052 - 53069 - | ABC transporter substrate-binding protein Avi_5061 54302 - 55006 + | transcriptional regulator GntR family TERM 60 55123 - 55177 + F 100 -23.9 -3.727 | gap 1, opp_overlap 55156 55160, overlap 55119 GAAAATACCCTCGTC GCCTCTACAGCGTCGCTTGTGCGTTT TATA AAACGCACAAGCGACGCTGGA-ACGC TTTCAATCTCCTGCA TERM 61 55975 - 56006 + G 81 -13 -3.60098 | gap 1, opp_overlap 55975, overlap 55978 AATCCAGTGGGAAGA GGGGGGCG-TTCCCC ATC GGGGAATCGCCCTGC TTTCCCGTGACCAGT TERM 62 55978 - 56003 + G 84 -15.5 -2.92613 | gap 1, opp_overlap 55975, overlap 55975 CCAGTGGGAAGAGGG GGGCG-TTCCCC ATC GGGGAATCGCCC TGCTTTCCCGTGACC Avi_5062 55427 - 56710 + | possible oxidoreductase Avi_5063 56881 - 57480 + | NAD(P)H-flavin oxidoreductase TERM 63 57503 - 57551 + F 77 -3.2 -5.03314 | gap 2, opp_overlap 57509, overlap 57509 GCCTCTCTGTCGAGT GACATATGCGCAGCAG--CACCAA GCA TTGGTGAGCTGCTGCGCATTTAAA TTTTTTACCAATCCA TERM 64 57509 - 57545 + F 100 -15.4 -4.05875 | gap 2, opp_overlap 57509, overlap 57503 CTGTCGAGTGACATA TGCGCAGCAG--CACCAA GCA TTGGTGAGCTGCTGCGCA TTTAAATTTTTTACC TERM 65 57545 - 57509 - f 95 -15.4 -2.91264 | gap 2, opp_overlap 57509 57503 CTGTCGAGTGACATA TGCGCAGCAG--CACCAA GCA TTGGTGAGCTGCTGCGCA TTTAAATTTTTTACC Avi_5064 57596 - 57991 + | hypothetical protein TERM 66 58051 - 58096 + F 100 -14.9 -3.727 | overlap 58049 58052 TTTCTCACTGGGGGC ACGTTACATCGTCGTGCGTTT TGTA AAACGTACGGCGATGTAACAC TTTAAATCTGCTACA TERM 67 58052 - 58095 + F 100 -18.4 -2.83299 | overlap 58049 58051 TTCTCACTGGGGGCA CGTTACATCGTCGTGCGTTT TGTA AAACGTACGGCGATGTAACA CTTTAAATCTGCTAC TERM 68 59026 - 59011 - g 74 -2.5 -5.0133 | overlap 59012 59013 CAGCTTGCCAAAAAA CGGCA TCTGGC TGCCA AGCTGCTGATCGAGC cfa 58678 - 59781 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 69 61000 - 61016 + G 80 -4.4 -4.90778 | gap 1, overlap 61003 CGGTGTCCTGGTCGG CGTGCTG TTGT CAGC-CG TTTTCTTTGCCTGGA Avi_5067 59876 - 61366 + | sulfate permease uspA 61378 - 62232 + | Universal stress protein Avi_5070 62339 - 63541 + | Major facilitator superfamily permease protein Avi_5072 65487 - 63703 - | hypothetical protein Avi_5073 66572 - 65889 - | transcriptional regulator TetR family Avi_5074 66801 - 68207 + | oxidoreductase TERM 70 68386 - 68343 - g 78 -3.7 -5.00884 | opp_overlap 68326 AGTTGCTGCAAAAAA GCGCCTTCTTGTCGATTTC CAGGTC GACCTCGCCAAGATGGTGC GTGCCAATGCGGTTG Avi_5075 68212 - 68739 + | hypothetical protein TERM 71 68808 - 68836 + F 70 -9.7 -3.15503 | gap 1, opp_overlap 68808 68811, overlap 68806 68811 TTGTCTTTTAGAGAA GACGGTTGCCAG TTTCCC CTGGCAACC-TC TGTTGAGTGTTGAGC TERM 72 68836 - 68808 - f 74 -9.7 -3.48276 | gap 1, opp_overlap 68808 68806 68811, overlap 68811 TTGTCTTTTAGAGAA GACGGTTGCCAG TTTCCC CTGGCAACC-TC TGTTGAGTGTTGAGC TERM 73 68811 - 68834 + F 81 -12.5 -3.136 | opp_overlap 68808 68811, overlap 68808 68806 TCTTTTAGAGAAGAC GGTTGCCAG TTTCCC CTGGCAACC TCTGTTGAGTGTTGA TERM 74 68834 - 68811 - f 76 -12.5 -2.58822 | opp_overlap 68811 68808 68806, overlap 68808 TCTTTTAGAGAAGAC GGTTGCCAG TTTCCC CTGGCAACC TCTGTTGAGTGTTGA Avi_5076 69066 - 70604 + | major facilitator superfamily permease protein Avi_5077 70629 - 71237 + | nitrilotriacetate monooxygenase TERM 75 71593 - 71610 + G 78 -9.1 -4.11692 | AGGCCGTGCGGATCG TCGCTCC AGGG GGGGCGA TTTTCGAGGTGCATA Avi_5079 71280 - 72179 + | oxidoreductase TERM 76 72413 - 72389 - f 86 -12.8 -3.53224 | CAGCTTTTGGGTAAA CCCTTCCCCG CTATT CGGGGAGGGG TGGCGGATCGACCAG TERM 77 73042 - 73052 + G 71 -6.8 -4.14739 | TTGCTGTTTGCGACG GCTG CTC CAGC TTTTGCCATCGATCC TERM 78 74233 - 74246 + G 74 -2.3 -4.87665 | ATCGTTAATCCGAAC TCTGC TTTC GCTGA TTTTTCTACCTCAAG Avi_5080 72997 - 74346 + | Carbohydrate-selective porin Avi_5081 74593 - 75489 + | hypothetical protein TERM 79 75650 - 75669 + G 74 -6.4 -4.4767 | TTGAGACCGGCTTTG GAAGCGCT TGAT AGCCCTTC TTTTGTGCTGGCTGA Avi_5082 75500 - 76354 + | 2-hydroxyhepta-24-diene-1 Avi_5084 76833 - 77324 + | CMP/dCMP deaminase zinc-binding Avi_5085 78086 - 77346 - | transcriptional regulator GntR family TERM 80 78299 - 78331 + H 88 -2.6 -5.49568 | overlap 78289 CGGTTCCGCCTTTTT GCCGGTTTGCTC GGTCCGTTG GGGCAATGCGGC TTTTTGTTTTGAGTT TERM 81 79122 - 79097 - g 71 -10.5 -3.5594 | gap 1, opp_overlap 79089 79097 79098, overlap 79084 79098 AACCGATGCCGCAAA CGGCTTTG-GCG GTG CGCGCAAAGCCA TTCTGGATGAAATCC TERM 82 79121 - 79098 - g 70 -11.8 -2.73243 | gap 1, opp_overlap 79089 79097 79098, overlap 79084 79097 ACCGATGCCGCAAAC GGCTTTG-GCG GTG CGCGCAAAGCC ATTCTGGATGAAATC Avi_5086 78435 - 79988 + | ABC transporter substrate binding protein (dipeptide) TERM 83 80222 - 80272 + G 85 -11.1 -4.07568 | gap 1, opp_overlap 80211 80213 AAGACATCGCGCTGA TGCGCGGGCTTGGGGT-GAAGGCC TATC GGCTTTCCACCGCATGGCCACGCA TTTTCCCAAGCGGCA bgl 79990 - 81351 + | beta-glucosidase TERM 84 81633 - 81669 + G 76 -5 -4.72986 | gap 1 CTTTCTCGATATGCC GGTGGGTGCTGCCCTGT TGCA AC-GGGCCGAGCCAACC TTTTTCCTCACGCTA Avi_5088 81376 - 82317 + | ABC transporter membrane spanning protein (dipeptide) TERM 85 82522 - 82512 - g 78 -8.2 -4.43189 | opp_overlap 82514 ATGAACCGGATAAAA CCGC CGA GCGG AACCTATTGGTTTGG Avi_5089 82317 - 83198 + | ABC transporter membrane spanning protein (dipeptide) TERM 86 83954 - 83929 - g 76 -11.9 -3.33315 | gap 1 CGAAGACCTTTATAA CCTCGCCGAGCG CTG CGCT-GGCGAAG GAATCCGGCTGGATA TERM 87 84026 - 84037 + G 71 -7.2 -4.2349 | opp_overlap 84002, overlap 84014 84004 GCGGCCATCAAACGG GGGC TTTT GCCC TTTTCGATCTCCACC Avi_5090 83201 - 84412 + | hypothetical protein Avi_5091 84452 - 84943 + | hypothetical protein Avi_5093 85782 - 84955 - | transcriptional regulator selA 85879 - 87075 + | L-seryl-tRNA(ser) selenium transferase TERM 88 87166 - 87210 + F 82 -11.5 -3.44308 | overlap 87164 87167 TTTTATGCGATCACT CTTTCGAGTCTGTCAGGTTAA GGT TGAACCAGACAGACTCGAGGC TCTCTTGTTTTCGTT TERM 89 87167 - 87209 + F 90 -15 -2.64958 | overlap 87166 87164 TTTATGCGATCACTC TTTCGAGTCTGTCAGGTTAA GGT TGAACCAGACAGACTCGAGG CTCTCTTGTTTTCGT TERM 90 87673 - 87683 + G 71 -6.8 -4.25104 | overlap 87682 CTTGCCGTTTCGCTT CACC GAC GGTG TTTTCCTGGACACCC Avi_5096 87500 - 89038 + | GGDEF family protein TERM 91 89895 - 89909 + G 72 -8.5 -3.90588 | opp_overlap 89881, overlap 89876 89905 AGCGGCCCGGTCGCT CGGGC TCGCT GCCCG TTTCGTTACGGGCTA Avi_5097 89305 - 90198 + | hypothetical protein TERM 92 90636 - 90662 + G 83 -4.4 -5.07652 | overlap 90625 TATTGCGATACGGAC CGCCTTTCAG ATTTCGC CTGGAAGACG TTTTCTTTTACCCCC Avi_5101 90294 - 91097 + | Transglutaminase domain-containing protein Avi_5102 91405 - 92076 + | Permeases of the major facilitator superfamily Avi_5103 92361 - 92999 + | oxidoreductase with iron-sulfur subunit Avi_5106 92996 - 93946 + | oxidoreductase Avi_5107 93950 - 96148 + | dehydrogenase TERM 93 96290 - 96329 + F 81 -9.4 -4.06055 | overlap 96294 CGCTCACCGCAACTT GTTATGAGAAGGGTCATT GAAA AATGGCTCTTCTCATCCC TTTACTTTAGAGCCT TERM 94 96294 - 96325 + F 81 -13.2 -2.73676 | overlap 96290 CACCGCAACTTGTTA TGAGAAGGGTCATT GAAA AATGGCTCTTCTCA TCCCTTTACTTTAGA Avi_5108 96470 - 98164 + | two-component sensor TERM 95 99020 - 99010 - g 71 -6.8 -4.1964 | CGGAACATTTGAAAA CAGG GCG CCTG GTTCACGTCTTGCGA Avi_5109 98265 - 99164 + | transcriptional regulator LysR family Avi_5111 99906 - 99220 - | hypothetical protein TERM 96 99999 - 100034 + r 77 -10.2 -3.65199 | opp_overlap 100000 100004, overlap 100000 100005 ATCGACAACAAGAGA AGCGAGGCCGCGGCGG CTTT TCACCGCGGCCATGCC TTTGGATCAGGACTT TERM 97 100033 - 100000 - R 100 -13 -3.87364 | opp_overlap 99999 100000 100005, overlap 100004 TCGACAACAAGAGAA GCGAGGCCGCGGCG GCTTTT CACCGCGGCCATGC CTTTGGATCAGGACT TERM 98 100000 - 100033 + r 85 -13.7 -2.78798 | opp_overlap 100000 100004, overlap 99999 100005 TCGACAACAAGAGAA GCGAGGCCGCGGCGG CTTT TCACCGCGGCCATGC CTTTGGATCAGGACT TERM 99 100029 - 100004 - R 95 -15.4 -2.68784 | opp_overlap 100000 99999 100005, overlap 100000 CAACAAGAGAAGCGA GGCCGCGGCG GCTTTT CACCGCGGCC ATGCCTTTGGATCAG TERM 100 100005 - 100015 + r 77 -8.2 -4.07568 | opp_overlap 100004 100000, overlap 100000 99999 AACAAGAGAAGCGAG GCCG CGG CGGC TTTTCACCGCGGCCA Avi_5112 101228 - 100041 - | non-heme haloperoxidase TERM 101 101208 - 101180 - G 71 -11 -3.28712 | gap 1, opp_overlap 101170 101175 GGGTCTCGGCGACAA CCGCG-TCGCGAT GATT AACGCGAACGCGG CGACTTTTCCGGTTG fabG 101853 - 101290 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 102 101488 - 101506 + g 71 -8.1 -3.9712 | GTTTGGATCGCTCGC GATGGCG AGCTG CGCCGTC TTTGTCATGCCGTAA TERM 103 102741 - 102706 - g 73 -11.9 -3.13403 | opp_overlap 102717, overlap 102704 TCTTGGTGATCAAGA GCTTGAGATCACGGC TATCTC GCCGTGATCTGACGC GAGCGCAAAACGATG greB 102248 - 102733 + | transcription elongation factor TERM 104 102764 - 102752 - T 74 -7.7 -4.14243 | opp_overlap 102752 GACGCGAGCGCAAAA CGATG TGT CATCG TTTGCCCGTATCAGC TERM 105 102841 - 102869 + T 100 -16.9 -3.47227 | overlap 102842 TGGTTTTCCCTCGAG TCTGTCAGGTTCA ATC TGAACCTGACAGG TTGTCGTCATTACGC TERM 106 102842 - 102868 + T 100 -18.2 -2.68015 | overlap 102841 GGTTTTCCCTCGAGT CTGTCAGGTTCA ATC TGAACCTGACAG GTTGTCGTCATTACG melA 104240 - 102879 - | alpha-galactosidase TERM 107 104302 - 104285 - R 73 -9.1 -3.57144 | opp_overlap 104299 GTGGCGACGTTGAAA GCAGCTC TGAC GAGCCGC TGGGTGTAGGCGGTT Avi_5116 105933 - 104266 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5117 107067 - 105946 - | ABC transporter membrane spanning protein (oligopeptide) TERM 108 106725 - 106714 - G 70 -2.2 -4.7254 | overlap 106701 106700 ACCCTTGACGAAAAA GCCA AGGT TGAC GGGGTTTTCAAAGTC Avi_5118 108077 - 107064 - | ABC transporter membrane spanning protein (oligopeptide ) TERM 109 107632 - 107616 - G 70 -2.1 -4.72986 | CAGCGCCATCAAAAA GCGTGGC ACG GTCATGC CGAGAAACGAGATGC TERM 110 107833 - 107821 - G 71 -7.7 -4.07687 | AGGCTGTGGCCAAAA TCACC ACG GGTGA CAATGCCTGTGATCC TERM 111 108174 - 108193 + r 72 -5.7 -4.57569 | overlap 108171 GAGGTTTGTTTTCGC CCGGCTT GCCGGG AAGCTGG TTTTTGAACAGCTCA agpA 110238 - 108151 - | ABC transporter substrate binding protein (alpha-galactoside) TERM 112 110303 - 110340 + r 75 -11.3 -3.05993 | overlap 110305 CGCTCCCTCGCGGGT CATGTCATCCGGCCCCT CCTC AGAAACCGGATGACATG TCTATGTCTGGATCA melA 111825 - 110353 - | alpha-galactosidase TERM 113 110462 - 110472 + g 71 -8.2 -4.0098 | GTCTTGACGGTACCT CGGC TCA GCCG TTCTTTGGCTTCAGG TERM 114 112648 - 112665 + G 75 -5.5 -4.59511 | ACTGGCGGCAGTGTC TGGTCTC AGCC GAGCCCA TTTTTCACGGGTCTT agpT 112016 - 112960 + | transcriptional regulator AraC family Avi_5123 113461 - 113066 - | hypothetical protein Avi_5124 114028 - 113531 - | hypothetical protein phoP 114274 - 114942 + | two component response regulator TERM 115 115367 - 115349 - g 77 -2.4 -5.1101 | TGACCATGGAAAAAA GCTCTA TTTGCGT CAGAGC ACCCGTGATGTCGGT phoQ 114939 - 116309 + | two component sensor kinase TERM 116 116491 - 116479 - g 75 -5.5 -4.70659 | GTCGACACGTAAAAA GCCTG CTC CAGAC CGTGGATCGACAGGT TERM 117 117002 - 116959 - g 75 -8.9 -3.96216 | gap 1 TCCGGATGCAAATAA CGGCGATCGAAACTCCGAGG ATAAG CTTCAG-GCTTCGATCGACG CCCATAAAATCCTCA Avi_5127 116429 - 117037 + | molecular chaperone DnaJ family Avi_5128 118117 - 117104 - | zinc-binding dehydrogenase Avi_5129 119460 - 118171 - | hypothetical protein TERM 118 118833 - 118870 + g 78 -14.1 -2.62263 | overlap 118842 118843 GATTGAAACCCTGGT CGATGGCGTCCTGCGCC AGAC GGCGCAGCTTGTCATCG TCATATCCCAGCCAT TERM 119 118843 - 118860 + g 71 -12.7 -2.66692 | overlap 118842 118833 CTGGTCGATGGCGTC CTGCGCC AGAC GGCGCAG CTTGTCATCGTCATA TERM 120 119562 - 119605 + r 81 -10.6 -3.65425 | gap 1, opp_overlap 119560 119559 119571 119575 CTCACTTAAAAACGG GTCATTATACGAAGAGTCATT GAA AATGACTCTTCGTATACC-AC TTTAGAATATCTCAA TERM 121 119597 - 119571 - R 100 -16.8 -2.79312 | opp_overlap 119562, overlap 119560 119559 119575 AAACGGGTCATTATA CGAAGAGTCATT GAA AATGACTCTTCG TATACCACTTTAGAA TERM 122 119593 - 119575 - R 72 -10.4 -3.29471 | opp_overlap 119562, overlap 119571 119560 119559 GGGTCATTATACGAA GAGTCATT GAA AATGACTC TTCGTATACCACTTT Avi_5130 120515 - 119703 - | hypothetical protein TERM 123 120449 - 120474 + g 84 -7.5 -4.72272 | gap 1, overlap 120441 120440 GAATGGTGGCAAGTT CCGGTGGGGGCC ATT GGC-CTTGCCGG TTTTTCATGAGCCAG Avi_5131 121522 - 120518 - | oxidoreductase TERM 124 121583 - 121557 - R 100 -17.3 -3.5771 | opp_overlap 121554, overlap 121574 AAAAATCCGGGGAAA CGGCACGCGAG ATGAA CCCGCGTGCCG CAATTACATCAATAA rbsB 122533 - 121592 - | ABC transporter substrate binding protein (ribose) TERM 125 122111 - 122132 + g 87 -12.9 -3.8211 | CTGGATCATCGCCTT GGCCGCCAG TTCA CCGGCGGCC TTGTTGTCCGTCGCC rbsC 123681 - 122632 - | ABC transporter membrane spanning protein (ribose) TERM 126 123307 - 123262 - G 76 -11.7 -3.34192 | opp_overlap 123274 AAGGGTCGCAATGAA CGGCGGCAGCTTCAGCCTGGT AATG ACCAGGCCATTGATGACGCCG CAGGCCGTGCCGGTG rbsA 125248 - 123674 - | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 127 123950 - 123967 + g 71 -7 -4.15833 | AAAGAACATGATCTT TGGCTG CCGGAA CAGCCA TTTTCCAATAATGAT TERM 128 125056 - 125076 + g 80 -14.1 -2.75081 | overlap 125053 125052 CTCTCTGGTAGACGC CGCTGATGA TCT TCATCAGCG TGGATTTTCCGGCTC TERM 129 125315 - 125333 + H 70 -6.8 -4.11304 | opp_overlap 125318, overlap 125318 TAGGGCATGCTGCGA TAATTGGT CAA GCCAATTA TTCTTTCTCGCTTGC TERM 130 125730 - 125763 + G 83 -13.9 -3.34233 | gap 1, overlap 125732 125734 GTTATCGTCAAGGCC GCTGCCGCAATGACCG ATG CGGTTTTTGCGGC-GC TTGTCGGGATTGTCG TERM 131 125732 - 125762 + G 74 -14 -2.60219 | overlap 125730 125734 TATCGTCAAGGCCGC TGCCGCAATGACCG ATG CGGTTTTTGCGGCG CTTGTCGGGATTGTC TERM 132 125734 - 125751 + G 70 -4.1 -4.58283 | overlap 125732 125730 TCGTCAAGGCCGCTG CCGCA ATGACCGA TGCGG TTTTTGCGGCGCTTG Avi_5136 125415 - 126086 + | transcriptional regulator GntR family TERM 133 126746 - 126758 + G 72 -9.1 -3.86202 | ACCTTCACTTATGGC GACCG TAG CGGTC TTTGGTATGATACCG TERM 134 126807 - 126787 - g 75 -5.4 -4.62471 | gap 1, opp_overlap 126801 CGGAACCTTCAAAAA GGCAGGCAT CACC ACGCC-GCC TAAGGATTGGGCGCA Avi_5137 126281 - 127582 + | bacterial extracellular solute-binding protein TERM 135 127619 - 127632 + F 73 -9.5 -3.61398 | CACGGACGGGAGGGA GCGCC AGCC GGCGC TTCTTCCAGACGGAC TERM 136 127672 - 127684 + F 73 -9.1 -3.66742 | overlap 127670 GCTCTCGTCCTGCTG GCACC CAT GGTGC TGTTATTTCTGTGCG malF 127678 - 128505 + | ABC transporter membrane spanning protein (maltose) aglG 128502 - 129326 + | ABC transporter membrane spanning protein TERM 137 129373 - 129363 - f 85 -8.2 -4.56597 | TGTCCCGGCCAAAAA CCGG CCA CCGG GAGGAGAAATCATAT Avi_5140 129387 - 130469 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_5141 130508 - 132733 + | hypothetical protein Avi_5142 132809 - 134881 + | hypothetical protein Avi_5143 134941 - 135972 + | transcriptional regulator LacI family TERM 138 136773 - 136715 - f 70 -3.8 -4.68919 | overlap 136718 136723 AAAGACAAACGAAAA CAAGAGAACTTAGAGTCTGTCTGGTTCA ATA TGAAGCTGACAGACTCTAAGACCAGACA AGCACAGTAAATCGC TERM 139 136770 - 136718 - f 90 -9.9 -4.40882 | overlap 136715 136723 GACAAACGAAAACAA GAGAACTTAGAGTCTGTCTGGTTCA ATA TGAAGCTGACAGACTCTAAGACCAG ACAAGCACAGTAAAT TERM 140 136765 - 136723 - f 100 -19.4 -3.97437 | overlap 136718 136715 ACGAAAACAAGAGAA CTTAGAGTCTGTCTGGTTCA ATA TGAAGCTGACAGACTCTAAG ACCAGACAAGCACAG Avi_5146 136830 - 137720 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) TERM 141 138355 - 138373 + G 70 -4.5 -4.52781 | gap 1, overlap 138355 138356 CGGGCTCTTGTGGGG C-GCGCGC TCCG GCGTGCAG TTTTCCTTGTCCTTG Avi_5147 137717 - 138616 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 142 139438 - 139456 + G 83 -8 -4.56597 | TATCATTGGCGGTCT GGCCTCGC TGC GCGGCGCC TTTTTCGGGGCGGCC Avi_5148 138620 - 139675 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 143 139755 - 139731 - f 70 -9.9 -3.15996 | overlap 139729 CATCATCCATGAACA CGTCCGATGCG CAT CGCACCGGGCA ATACCAGGAGTGTAT TERM 144 140536 - 140525 - g 71 -7.2 -4.11773 | AAACAGCTGCCAAAA CCGG CTTT CCGG TGGACCATATCATTG TERM 145 141095 - 141074 - g 71 -10.9 -3.19178 | gap 1, overlap 141072 141064 ATAAAGGCATCAAGA TCCGCA-CGG CTG CCGATGCGGA TGGCGTTACCAATTA Avi_5149 139777 - 141111 + | hypothetical protein TERM 146 141199 - 141226 + F 72 -7 -4.19238 | opp_overlap 141200, overlap 141200 141202 GTTTGCCTTGGAAAA ACAGCCCATC GACAACGA GATGGGCTGA TTTTGCGGTTCAGCG TERM 147 141200 - 141225 + F 72 -10.5 -3.11222 | opp_overlap 141200, overlap 141199 141202 TTTGCCTTGGAAAAA CAGCCCATC GACAACGA GATGGGCTG ATTTTGCGGTTCAGC TERM 148 141225 - 141200 - f 95 -10.5 -4.56597 | opp_overlap 141200 141199 141202 TTTGCCTTGGAAAAA CAGCCCATC GACAACGA GATGGGCTG ATTTTGCGGTTCAGC TERM 149 141570 - 141538 - g 100 -15.6 -4.27617 | gap 1, opp_overlap 141541 TAGATGTCACCAAAA CAAGCCCGGCGGCGC TGGT GCGC-GCCGGCCTTG TACAGGTATTGGAAG TERM 150 141541 - 141567 + G 73 -11.5 -3.33315 | gap 1, opp_overlap 141538 ATGTCACCAAAACAA GCCCGGCGGCGC TGGT GCGC-GCCGGCC TTGTACAGGTATTGG TERM 151 141738 - 141719 - g 78 -4.2 -4.90778 | gap 1, overlap 141720 141721 CCGACTGAAAGAAAA GCGCCGGAC ACT GTCGGGC-C TCACCTCCGGTGGCG TERM 152 141907 - 141927 + G 71 -11.2 -3.27498 | GGCTATCCATTCTCG TCGCCGAA CAAAA TTCGGCGA TTGCTCTCACCTATG Avi_5150 141303 - 142076 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) TERM 153 142180 - 142210 + T 100 -17 -3.60814 | overlap 142171 GCTGTATCGTTGATA CCCTCTGACACG GTTTCCG CGTGTCAGAGGG TTATCTATACCATTT mcpC 144624 - 142294 - | methyl-accepting chemotaxis protein TERM 154 145685 - 145699 + G 71 -7.1 -4.24342 | AAATTTGCCGCGCGC CACGC CGAAT GCGTG TTTATTGGTGCCACG TERM 155 145871 - 145899 + G 79 -7.4 -4.56597 | gap 1, overlap 145873 GCGGATTATCGCCGC TATGCCAG-CCCG GAAG CGGGCCTGGCGCA TTTTTCGGCCGGAAG Avi_5152 144962 - 146326 + | nitrilotriacetate monooxygenase TERM 156 146322 - 146349 + F 75 -6.8 -4.42386 | opp_overlap 146322 146326, overlap 146324 ATCGACACACGGAAA GGTAGCGCCGCG ACAT CGCGGCGAGAAC TTTTATGCCTGGCAA TERM 157 146425 - 146439 + F 81 -6.4 -4.87665 | overlap 146421 146422 146435 CCATGACGAGTCCGC CGCATT GGC AGTGCG TTTTTCTCCATGGCC Avi_5154 146569 - 147972 + | nitrilotriacetate monooxygenase acd 148007 - 149275 + | acyl-CoA dehydrogenase TERM 158 149683 - 149697 + G 71 -7.1 -4.17316 | GCTCTCTGGTTCCGA TGCGC AGAAG GCGCA TTATTTTCAGCGGGT acd 149297 - 150559 + | acyl-CoA dehydrogenase TERM 159 150555 - 150567 + F 74 -6.3 -4.52589 | opp_overlap 150529 CACGCCACGGGGCCA TCTGA CGT TCAGA TTTTCTATCCGCCGG TERM 160 150577 - 150604 + F 100 -12.7 -4.64676 | overlap 150578 TTCAGATTTTCTATC CGCCGGGTGCA TACCTC TGCACCCGGCC TTTTCTTGACCATAG TERM 161 150578 - 150603 + F 100 -16.2 -3.38324 | overlap 150577 TCAGATTTTCTATCC GCCGGGTGCA TACCTC TGCACCCGGC CTTTTCTTGACCATA Avi_5157 150631 - 151674 + | hypothetical protein TERM 162 151688 - 151713 + T 100 -17.7 -4.35926 | opp_overlap 151688 AAGGACAAACAAAAA CGGCCTGAACA GAAA TGTTCAGGCCG TTTTACATTTCAGAT TERM 163 151713 - 151688 - T 100 -17.7 -5.4182 | opp_overlap 151688 AAGGACAAACAAAAA CGGCCTGAACA GAAA TGTTCAGGCCG TTTTACATTTCAGAT Avi_5158 152992 - 151739 - | hypothetical protein TERM 164 152014 - 152032 + g 80 -10.2 -3.95787 | TTTCATGCAGGTTAT GGGGGCCA AAA TGGCCGCC TTTCTGGGTGTAATC Avi_5159 154069 - 153026 - | ABC transporter binding protein rbsC 155147 - 154101 - | ABC transporter membrane spanning protein (ribose) TERM 165 154775 - 154761 - G 75 -4.2 -4.77036 | overlap 154762 154765 CTTGACGATCAAAAA GGCATT GGC AAAGCC AATCAACGCGCCAAA rbsA 156628 - 155147 - | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 166 156251 - 156273 + g 74 -6.1 -4.45544 | opp_overlap 156250 156251 CGCGTCACTCAAAAT GCGCGCTGC CTCAC GCCGCACGC TTTTGGTTGATAGAA TERM 167 156305 - 156293 - G 84 -2.6 -5.36441 | GGTTGATAGAAAAAA CGGC TGACG GCCA TCGATATAGTGATTG Avi_5162 156998 - 158044 + | ABC transporter binding protein TERM 168 158082 - 158105 + T 100 -16.8 -4.32903 | opp_overlap 158082 CTGCGCAGACAAAAA CGGAAGCACC TCAC GGTGCTTCCG TTTTCCATGTTTGAT TERM 169 158105 - 158082 - T 100 -16.8 -4.96848 | opp_overlap 158082 CTGCGCAGACAAAAA CGGAAGCACC TCAC GGTGCTTCCG TTTTCCATGTTTGAT Avi_5163 159442 - 158120 - | O-acetylhomoserine sulfhydrylase rbsB 159786 - 160799 + | ABC transporter substrate binding protein (ribose) TERM 170 162262 - 162299 + G 75 -5.6 -4.58395 | gap 1, opp_overlap 162287, overlap 162264 TCCTGTCGTCCGACC TGCCGGAA-CTGGTTGG CATAA CCGACCGGATTCTGGTG TTTTTCCGGGGTCGG rbsA 160872 - 162425 + | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 171 163324 - 163339 + G 74 -2.4 -4.89852 | overlap 163319 163325 163333 CCAACCATTCCCGGC ACGCTG GTTT CGGCGA TTTTTGTCGGTGTGC rbsC 162415 - 163464 + | ABC transporter membrane spanning protein (ribose) Avi_5169 163472 - 164473 + | ABC transporter membrane spanning protein (sugar) TERM 172 164733 - 164748 + G 74 -2.6 -4.88495 | gap 1, overlap 164733 TTGCCGCCACCATGA CC-AAGA CAA TCTTCGG TTTTGTTCTCTCTCT Avi_5170 164714 - 165550 + | ABC transporter substrate binding protein (amino acid) TERM 173 165636 - 165594 - f 89 -13.7 -3.23393 | opp_overlap 165603, overlap 165592 TTCGACTTCAGAAGA TTTCGAATATCTCAAACCC ATCAA AGGCTTGGGATATTCGAAA ATGAAATACGGCGCG TERM 174 165975 - 165987 + G 71 -7.7 -4.06384 | overlap 165966 165983 GCCGACGCTGGTACA GCTGA TGT TCAGC TTTCTGGTGTTGAAC TERM 175 166026 - 166053 + G 74 -2.7 -4.89339 | gap 2 GTCCAATCTTGTCGG TGGCG-C-GCAGA ACAA TCCGCTGACGCCA TTTTTCTGGGTGGTT Avi_5171 165712 - 166458 + | ABC transporter membrane spanning protein (amino acid) Avi_5172 166455 - 167237 + | ABC transporter membrane spanning protein (amino acid) Avi_5173 167250 - 168035 + | ABC transporter nucleotide binding/ATPase protein (amino acid) Avi_5175 168044 - 169405 + | hypothetical protein TERM 176 169496 - 169538 + G 71 -6.9 -4.15565 | gap 1 GGGCTGGCCACCATG TCTCCGGCTGGCGGCATCCG AATG CGGAAGCCGGCAGC-GAAAA TTTTGACCTGCTGCG Avi_5176 169438 - 170727 + | monooxygenase Avi_5177 171736 - 170735 - | Ketopantoate reductase Avi_5178 172917 - 171736 - | acyl-CoA dehydrogenase-related protein TERM 177 172965 - 173007 + r 84 -4.2 -5.27938 | gap 1, overlap 172968 AGCCGCCGGGTGAGG CT-TGAGCATCGTGCAG AAATTGGAAC CAGCACGATGCTCTCAG TTTTTGTTTGCGCAT TERM 178 172968 - 173003 + r 71 -10.5 -2.95994 | overlap 172965 CGCCGGGTGAGGCTT GAGCATCGTGCAG AAATTGGAAC CAGCACGATGCTC TCAGTTTTTGTTTGC ssuD 174173 - 173070 - | sulfonate monooxygenase Avi_5180 175425 - 174340 - | monooxygenase moaD 177158 - 175422 - | ABC transporter nucleotide binding/ATPase protein dppC 177985 - 177137 - | ABC transporter membrane spanning protein (dipeptide) TERM 179 177790 - 177805 + g 75 -5.4 -4.56597 | gap 1, opp_overlap 177783, overlap 177783 177791 CGAACCAATGCTGTG C-GCTGG GTG CCAGCAG TTTTTGAGCGGGAAC TERM 180 177911 - 177934 + g 83 -4.6 -5.09895 | gap 1, opp_overlap 177905 TGAGATGAACACCGT TGG-CGGCA TGTGGAC TGCCGACCA TTTTTTGGCTGCCTG Avi_5183 178992 - 177982 - | ABC transporter membrane spanning protein (oligopeptide) Avi_5184 180669 - 179017 - | ABC-type transporter, substrate binding protein TERM 181 179236 - 179263 + g 82 -10.6 -4.16921 | gap 1 TAGCTCATTGATCTT CTGG-TCGCTCTG GTC CAGCGCGAACCAG TTTTCGCCATTATTG TERM 182 180145 - 180157 + g 86 -9.1 -4.56775 | opp_overlap 180145, overlap 180152 GAGGGTTGGAATGAA GCCGA GCG TCGGC TTTTTGAAGACGACT TERM 183 181722 - 181697 - g 74 -6.1 -4.41494 | TACGGTCAATCAAAA CGGCACTCTCA ATAT CGAGAATGGCG GTACTGTCGACGCAA Avi_5186 181293 - 184463 + | outer membrane autotransporter TERM 184 184488 - 184521 + G 75 -5.2 -4.56597 | gap 1, opp_overlap 184468, overlap 184489 184491 CCAAAATTGTTGCGA TC-ATGGTGGCCGCG AATGC CGCGTCCACCGTCGC TTTTTCACAAGACAG invB 184463 - 184990 + | Invasion protein B TERM 185 185383 - 185401 + G 78 -3.8 -5.00616 | overlap 185386 TCCTTTCCCGCCCAG CATGTTCA TCC TGGACCTG TTTTTTGAGGGAAAC Avi_5188 185225 - 185887 + | two component response regulator Avi_5189 187477 - 185858 - | Signal transduction histidine kinase TERM 186 187902 - 187936 + r 100 -20.9 -2.80816 | gap 1 CAGGTCTGCCGGCAA TCTGATGGGACGCGGC ATCT GCCGCGTCCCATC-GA TGTCATCGATCAGAC katA 190129 - 187946 - | catalase TERM 187 190887 - 190857 - R 100 -16.2 -2.8785 | overlap 190849 TAATTAACCAGTAGA GCCTGTCTGGTTCA GCG CGAACCTGACAGGC GTCTAAGACGCTGTC Avi_5192 191459 - 190980 - | hypothetical protein dapA 192489 - 191548 - | dihydrodipicolinate synthase TERM 188 192515 - 192542 + r 75 -11.3 -2.87132 | TATTGGATTTCGAAT GCGCTTTCCGG TACAAT CCGGAAAGCGG TATGTCAGGGAAAGG Avi_5194 193880 - 192570 - | Permeases of the major facilitator superfamily TERM 189 192739 - 192756 + g 79 -6.9 -4.56597 | opp_overlap 192739 AAATTCTGCAGGGAA CCGAGTG ACGC CACCCGG TTTTTCGGAGCAACG TERM 190 192935 - 192949 + g 73 -3.4 -4.74215 | TGCGACGACCACGGA CCGGTG AAG CCTCGG TTTTCTTAATGATCT Avi_5195 194252 - 195328 + | transcriptional regulator LacI family TERM 191 196002 - 195986 - g 77 -7.9 -4.36914 | opp_overlap 195984 195987, overlap 195987 GCCTGCTTGACAAAA GCCCGGT CGA ACCGGGT GCTGTTGCCGCCGAT TERM 192 196001 - 195987 - g 71 -11.4 -3.21934 | opp_overlap 195984 195987, overlap 195986 CCTGCTTGACAAAAG CCCGGT CGA ACCGGG TGCTGTTGCCGCCGA TERM 193 196117 - 196135 + G 75 -12.4 -3.17685 | opp_overlap 196098 CCGGCGCTTGCCAGT TCGGCGCC AGA GGCGCTGA TTGCCTATCTCCTTG Avi_5196 195955 - 196950 + | hypothetical protein TERM 194 197055 - 197072 + G 79 -5.5 -4.75518 | overlap 197057 CATCCAAGCGTTCCC GCTGACG CCAG CGTCAAC TTTTCCTTTTATGTG TERM 195 198277 - 198265 - g 71 -10.5 -3.53012 | TGCCTTTCCGTGAAA GCCGC TAT GCGGC GACATCAGCTGACAA Avi_5198 197025 - 198317 + | monooxygenase TERM 196 198311 - 198359 + F 100 -11.1 -5.41746 | opp_overlap 198322 CACAACAAGGGCAGC CAGCTAGAGCATTTCCGCGTTTC CTG GAAACGCATGAATACTCTAACTG TTTTTTTAACGCATT Avi_5199 198440 - 199651 + | hippurate hydrolase Avi_5200 199667 - 200209 + | acetyltransferase Avi_5205 202072 - 203010 + | ABC transporter substrate binding protein TERM 197 203021 - 203049 + F 90 -7.4 -5.01732 | overlap 203023 CGTAACCTGTACAGC TTTGGGGCGG TCATCAGCT CCGCCCCATA TTTTTTCAGGAGGTT TERM 198 203023 - 203047 + F 83 -10 -4.13561 | overlap 203021 TAACCTGTACAGCTT TGGGGCGG TCATCAGCT CCGCCCCA TATTTTTTCAGGAGG Avi_5206 203068 - 204003 + | ABC transporter substrate binding protein TERM 199 204001 - 204020 + F 77 -8.6 -4.05033 | gap 1, opp_overlap 204005, overlap 204005 GGCCTGCCAAGCTAT TGAAGCGCC TGC GGCGC-TCA TTTCTCTCGCGTAAA TERM 200 204017 - 204005 - f 72 -10.5 -3.09933 | opp_overlap 204001 204005 TGCCAAGCTATTGAA GCGCC TGC GGCGC TCATTTCTCTCGCGT TERM 201 204005 - 204017 + F 72 -10.5 -3.06686 | opp_overlap 204005, overlap 204001 TGCCAAGCTATTGAA GCGCC TGC GGCGC TCATTTCTCTCGCGT TERM 202 204832 - 204866 + G 78 -9.1 -4.10161 | opp_overlap 204837 CGCTGGGCGCCTGGA GCGAACGCTGCACCC GAATG GGGAGCGCCGTACGC TTTTCCCGCGTGATC Avi_5208 204047 - 205126 + | monooxygenase envZ 206522 - 205200 - | two component sensor kinase TERM 203 206021 - 206005 - G 90 -2.9 -5.67283 | overlap 206015 AAGGCAAAGAAAAAA GCGATCA AGA CGACCAC GGCGATAAAGTAATA TERM 204 206176 - 206149 - G 78 -3.2 -5.08824 | gap 1, overlap 206150 206151 CGGCCATCCAAAAAA GCGCGCCAGCCGC CAA GGGGC-GGCTCTC CATCAGGCGGAAACA petR 207240 - 206515 - | two component response regulator Avi_5211 207483 - 208559 + | HlyD family secretion protein TERM 205 210161 - 210171 + G 74 -8.2 -4.1721 | TTGACGATCCTGTTT GCGG TTG CCGC TTTTGCCCTGTCCCT TERM 206 210489 - 210501 + G 75 -5.5 -4.65168 | overlap 210490 GCAAGATCGAAGCTG TGCTC AAT GAGCG TTTTTCGGATCTCGT Avi_5212 208556 - 211660 + | AcrB/AcrD/AcrF family protein Avi_5213 211816 - 212613 + | hypothetical protein Avi_5215 213627 - 212692 - | AraC-type DNA-binding domain-containing protein Avi_5216 213879 - 215264 + | nitrilotriacetate monooxygenase TERM 207 215269 - 215300 + F 100 -14.4 -3.91144 | gap 1, opp_overlap 215287 CTGCTGAATAATGTC GCAGGGGAGCCTGAC CAA GCCGGGCTCCCC-GC TTTGTCAGATCTGGA Avi_5217 215384 - 215833 + | flavoprotein oxidoreductase TERM 208 215961 - 215923 - T 100 -14.8 -3.55071 | opp_overlap 215927, overlap 215927 TGAGACCTTTTCAAA GGAATACCTGGAGTCATT TTC AATGACTCCAGGTATTAT GTAAATAAGCGTGCT TERM 209 215927 - 215957 + T 100 -20 -3.51924 | opp_overlap 215923 215927 ACCTTTTCAAAGGAA TACCTGGAGTCATT TTC AATGACTCCAGGTA TTATGTAAATAAGCG TERM 210 215957 - 215927 - T 100 -20 -3.51411 | opp_overlap 215927, overlap 215923 ACCTTTTCAAAGGAA TACCTGGAGTCATT TTC AATGACTCCAGGTA TTATGTAAATAAGCG Avi_5218 217585 - 216095 - | Permeases of the major facilitator superfamily TERM 211 216829 - 216809 - G 72 -6.7 -4.34267 | overlap 216811 GGAGATAAGCCAAAA GGCAGCGGG GAT CCCGATGAC GGCGATCGCGATTGC Avi_5219 218972 - 217671 - | oxidoreductase TERM 212 219085 - 219098 + r 70 -3.7 -4.65263 | opp_overlap 219085 AACTCCGGAGGAAGA CCCCC TACA GGTGG TTTGTTTTGCAAGGT Avi_5221 219827 - 219306 - | hypothetical protein TERM 213 219727 - 219740 + g 72 -9.5 -3.67918 | TCTGGCGATGGATCC GCCGC GACC GCGGC TTTGAACTCTTCGTT TERM 214 220098 - 220111 + r 70 -3.7 -4.67353 | overlap 220083 CTCCTTTGATTGATC GCACC CAAA GGCGC TTTTTAGATCAATCC Avi_5222 220856 - 220317 - | transcriptional regulator TERM 215 220821 - 220835 + g 75 -5.6 -4.58395 | overlap 220809 220823 AATGCCGCGCATGGT GACAGC AGC GCTGCC TTTTTGACCAATGAG TERM 216 221007 - 220993 - H 74 -2.8 -4.99134 | opp_overlap 220993 220994, overlap 220994 ACGCCAAAGTAAAAA TTGACA CAG TGTCAG CTTTTCTCAATTACC Avi_5223 221145 - 222434 + | oxidoreductase Avi_5224 222434 - 223600 + | hypothetical protein TERM 217 223583 - 223609 + T 70 -7.2 -4.05816 | overlap 223584 ATCGAAACCTGGCCC ACTCTTCCGCCG GGT TGACGGAAGAGG TTTGTGATCCTTTTA TERM 218 223584 - 223608 + T 72 -10.7 -3.02405 | overlap 223583 TCGAAACCTGGCCCA CTCTTCCGCCG GGT TGACGGAAGAG GTTTGTGATCCTTTT fadL 224841 - 223660 - | long-chain fatty acid transport protein TERM 219 224084 - 224052 - G 72 -9.7 -3.69434 | overlap 224055 TCAAGGAACCGTAAA CCAGCCAACCCGGCG CGA CGCCGGTCTGGGCAG AGAGCTTGATCGACT Avi_5226 226816 - 225377 - | aldehyde dehydrogenase TERM 220 226018 - 225990 - G 75 -3.8 -4.82901 | gap 1 TGTCGTGGATAAAAA GCCTCTG-CCTGA GAGA TCAGGGCGGATGC AAGGTCTCCAAGTTT Avi_5227 227971 - 226820 - | MFS permease TERM 221 227027 - 227042 + g 71 -6.8 -4.20531 | opp_overlap 227026, overlap 227028 GGTTCGTGACATCAC TGACCC GTCG GGGTCG TTTTCGGTCAGTATA TERM 222 227833 - 227850 + g 73 -11.3 -3.48064 | opp_overlap 227815, overlap 227812 CCGCGAGTTCCGCGC TGGCGAC GATT GTCGCCA TTGCTTCGTTATAGC Avi_5228 228408 - 229439 + | AraC-type DNA-binding domain-containing protein TERM 223 229470 - 229487 + F 81 -4.8 -5.09173 | CAAAGGACAGCTTCA CCGCTA CGCAAA TGGCGG TTTTTTCCCCTATTA TERM 224 231109 - 231123 + G 73 -12.8 -2.72829 | opp_overlap 231103, overlap 231108 TTCACGGAACTCCAT CGGCGC CTG GCGCCG CTTTACAAACGTCTG Avi_5229 229570 - 231168 + | xylulose kinase Avi_5230 231161 - 231814 + | L-fuculose-phosphate aldolase atrB 231816 - 233276 + | glutamate-1-semialdehyde aminotransferase TERM 225 233831 - 233806 - g 79 -6.9 -4.59109 | gap 1, opp_overlap 233811 GAGATCCTGGAAAAA TGCGC-TGAATG TTT CATTCTTGCGCA AAGTGCCACAGTCAA Avi_5232 233284 - 233967 + | hypothetical protein TERM 226 234020 - 234040 + F 70 -3.9 -4.65895 | GCAGGCCAATGGTGC GATTGCTGC GTG GAAGCTATC TTTTTGCATCGCCGG Avi_5234 234179 - 235228 + | hypothetical protein Avi_5235 235257 - 236084 + | oxidoreductase protein Avi_5237 236171 - 236833 + | hypothetical protein Avi_5238 238167 - 236944 - | hypothetical protein TERM 227 237925 - 237913 - G 78 -6.2 -4.67234 | opp_overlap 237924 ATGCAATCCGAAAAA GCCG TCGAG CGGC AGCACCGGCTTGTCG Avi_5240 239745 - 238171 - | hypothetical protein TERM 228 239049 - 239037 - G 74 -6.9 -4.2828 | GGTTATCGAGGAAAA CCAGC ATG GCCGG ATGGGTTTCGACCGC TERM 229 239297 - 239311 + g 74 -2.7 -4.87665 | overlap 239298 TAGGGACGCTTGGAG ACCGG CATAT CCGGC TTTTTGTCCATGGAC TERM 230 239746 - 239776 + r 73 -9.2 -3.57971 | gap 1 GTTGGAATTGGACAT GGCCGAT-ATGAA CTCCGT TTCATCATCGGCC TTTCAACGTCGCTAT Avi_5241 240271 - 239822 - | hypothetical protein TERM 231 240203 - 240188 - G 77 -2.4 -5.08178 | overlap 240190 ATAGAGATAGAAAAA CCCGGC ACCG GCAAGG GCGCAGATCAGGAAG Avi_5242 240705 - 240268 - | hypothetical protein sigW 241276 - 240698 - | ECF family sigma factor TERM 232 241566 - 241543 - R 95 -15.3 -3.01712 | opp_overlap 241533, overlap 241545 GCTGCCCCGGGAATA CAGGCCGGG TTTTCG CCCGGCCTG CCGATCATCAACGCT TERM 233 241564 - 241545 - R 79 -12.1 -3.06696 | opp_overlap 241533, overlap 241543 TGCCCCGGGAATACA GGCCGGG TTTTCG CCCGGCC TGCCGATCATCAACG phnA 241969 - 241574 - | alkylphosphonate uptake protein TERM 234 242247 - 242227 - g 77 -2.3 -5.06816 | overlap 242228 242229 ATGGTTCAACAAAAA GGCGCCCTC TCG GCGGTTGCC AAACTCTGGCTGATC Avi_5248 242212 - 244641 + | pyrroloquinoline-quinone-dependent quinate dehydrogenase TERM 235 244687 - 244662 - T 100 -16.1 -3.32914 | opp_overlap 244663, overlap 244653 244663 ATCCAATGACAGCAA TCCGCCCGGAG GCAG CTCCGGGCGGT TTCTATTTTCCCATC TERM 236 244663 - 244686 + T 100 -19.6 -4.45771 | opp_overlap 244662 244653 244663 TCCAATGACAGCAAT CCGCCCGGAG GCAG CTCCGGGCGG TTTCTATTTTCCCAT TERM 237 244686 - 244663 - T 100 -19.6 -2.59267 | opp_overlap 244663, overlap 244662 244653 TCCAATGACAGCAAT CCGCCCGGAG GCAG CTCCGGGCGG TTTCTATTTTCCCAT Avi_5249 245893 - 244751 - | transcriptional regulator ROK family TERM 238 246012 - 246026 + G 77 -10 -3.92522 | AATGCCTCGCCCTTC TCGCCA CCG TGGCGA TTTCTGCGCTTGCCA TERM 239 246973 - 246961 - g 72 -6.2 -4.36914 | opp_overlap 246961, overlap 246962 CCCGGCTGCAGAAAA GGGC GGCAA GCCC GCCAATCTTTCCCAC Avi_5250 245990 - 247363 + | ABC transporter substrate binding protein (sugar) TERM 240 247378 - 247408 + F 100 -14.6 -4.04295 | overlap 247379 AACTCGGCCCTGCTG CGTGCCGCCCGTCT CTT GGTCGGGCGGCACC TTTCATTCTCATTGG TERM 241 247379 - 247407 + F 100 -18.1 -3.01854 | overlap 247378 ACTCGGCCCTGCTGC GTGCCGCCCGTCT CTT GGTCGGGCGGCAC CTTTCATTCTCATTG TERM 242 247490 - 247513 + G 84 -3.8 -5.24129 | gap 1, overlap 247487 247491 ATTCTTTACCTCGCG C-CGGCAATCG CGC TGCTTGCCGTG TTTTTTCTGGCGCCG TERM 243 247491 - 247511 + G 74 -7.5 -4.25873 | overlap 247487 247490 TTCTTTACCTCGCGC CGGCAATCG CGC TGCTTGCCG TGTTTTTTCTGGCGC Avi_5252 247433 - 248344 + | ABC transporter membrane spanning protein (sugar) Avi_5253 248344 - 249408 + | ABC transporter membrane spanning protein (sugars) Avi_5254 249414 - 250526 + | ABC transporter nucleotide binding/ATPase protein (sugar) ugpQ 250539 - 251261 + | glycerophosphodiester phosphodiesterase Avi_5256 251366 - 252814 + | hypothetical protein Avi_5257 253247 - 252873 - | acetyltransferase TERM 244 253297 - 253321 + r 100 -13.6 -3.65199 | overlap 253298 AAATCTGGTTTCCCC TCCGCCCATG CAAGC CATGGGCGGG TTTCGATAAACAGTT TERM 245 253298 - 253320 + r 90 -14.9 -2.78798 | overlap 253297 AATCTGGTTTCCCCT CCGCCCATG CAAGC CATGGGCGG GTTTCGATAAACAGT Avi_5258 253761 - 253450 - | hypothetical protein Avi_5259 254432 - 253758 - | hypothetical protein TERM 246 254724 - 254747 + H 71 -9.5 -3.53091 | opp_overlap 254714 254724 ATAATGCTCGAATGA CGGGCGCCT TGTGGT GGGCGCTCG TTTCAAGGGCAGCGT TERM 247 257479 - 257499 + G 74 -13.3 -2.53263 | opp_overlap 257476 257474 CCGCGACCAATAGTG CCGGAACCG GGA CGGTTTCGG TCGCTTCGAACTCGG TERM 248 257971 - 258004 + G 71 -12.5 -2.53911 | gap 1 GCGCCTCTGCCAGGA TTCTTTCCGGCACGCC GTC GGC-TGCCGGAACGAG TAACTTCACGGTTAA Avi_5260 254829 - 260468 + | hypothetical protein TERM 249 260689 - 260712 + F 70 -3.8 -4.68919 | opp_overlap 260668 260689, overlap 260668 260662 CAGGTTCAGATTGAA CAAGACAGAC TTTA GCCTCTCTTG TTTTCGTTTGTCTTT Avi_5261 260885 - 262903 + | Valyl-tRNA synthetase TERM 250 262950 - 262912 - f 71 -10.8 -2.97021 | opp_overlap 262916, overlap 262905 262907 GCGTTAAAGACCAGA CTCTCACAGCCTCGCCGC AGG GCGACGGGGCTGTGTTTG ACGTCGTTGTGGCAG TERM 251 262916 - 262946 + F 100 -19 -3.64609 | opp_overlap 262912 262905 262907 TAAAGACCAGACTCT CACAGCCTCGCCGC AGG GCGACGGGGCTGTG TTTGACGTCGTTGTG TERM 252 263607 - 263643 + G 71 -8 -4.07568 | gap 1, opp_overlap 263590 TCGCCCCAGCAGGCT GTGCGGCTGCGGCGATC TCCC GATTACCG-GGCTGCAC TTTTCACCGAAGCGC Avi_5262 262944 - 264044 + | hypothetical protein phaG 264431 - 264063 - | potassium efflux system protein TERM 253 264250 - 264240 - G 93 -5.4 -5.47218 | TGCCACTGAAAAAAA GATC ATC GATC CAAGCATGATCCCGC phaF 264709 - 264428 - | PH Adaption potassium efflux system phaE 265182 - 264706 - | phaE protein TERM 254 264872 - 264887 + g 81 -9 -4.35518 | opp_overlap 264872 ATGACCGCCAGCACA GCCAGT GCGA ACTGGC TTTTGATCTCCAGTT phaD 266813 - 265182 - | pH adaption potassium efflux system protein phaC 267145 - 266810 - | pH adaption potassium efflux system protein phaA 270048 - 267145 - | pH adaption potassium efflux system protein TERM 255 267522 - 267509 - G 70 -2.3 -4.84017 | opp_overlap 267512, overlap 267512 AACCCCGCAGAAAAA CCACC GCCC GGCAG GTCATGTCCACGCAT TERM 256 269696 - 269676 - G 83 -13.3 -3.55071 | TGACATTGCCCGAAA GCACGATGC CAA GCATCGCGC CCATGAAGGCGAGCA Avi_5270 270661 - 271647 + | hypothetical protein TERM 257 271844 - 271900 + G 84 -13 -3.66666 | gap 1 CTGGATGCCAAGCCG CGCTCTGCCATGG-CCTTTGCAGGCGT GCCA ACGCTTGCAAAGGATCTGGGCGGGCCG TTTGCGGGTTTTCCG TERM 258 272973 - 272987 + G 74 -7.8 -4.11216 | TGCTGGCCCCGATGG GCAGTG AGC CGCTGC TTTTGCAACTGGCCG gatA 271655 - 273064 + | glutamyl-tRNA amidotransferase subunit A Avi_5272 273061 - 274581 + | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 259 275262 - 275273 + G 79 -7.2 -4.57569 | CGGCTGGCCTCAATC CGGC AGGT GCCG TTTTTGCAGGCGTCC Avi_5273 274571 - 275620 + | ABC transporter membrane spanning protein (sugar) TERM 260 276359 - 276382 + G 80 -4.4 -4.92239 | overlap 276356 CCTCATGGCGTCCGG GCCGGGCACT GCTG GGTGCGCTGC TTTTTGCATTTTTCG TERM 261 276425 - 276453 + G 76 -5.1 -4.72272 | overlap 276427 276428 TGCGCCTGCAAACCG CTCTCGGTGGGGC CGT GCCCTACCAACTG TTTTTGATGACCCCC Avi_5274 275617 - 276561 + | ABC transporter membrane spanning protein (sugar) TERM 262 276737 - 276747 + F 70 -6.8 -4.14739 | GTCAGCCCACCCTTT TGCG ATC CGCA TTTTCACATGGATGC Avi_5276 276755 - 277867 + | hydrolase Avi_5277 279468 - 277861 - | cytosine deaminase Avi_5278 280511 - 279465 - | hypothetical protein TERM 263 280253 - 280236 - G 84 -2.6 -5.44119 | opp_overlap 280248 280249, overlap 280238 TTCAGCGGAAAAAAA CAGCCG CAGATC CGGCTC CCGTTCCCGTTGGCC TERM 264 280384 - 280359 - G 86 -8.9 -4.71382 | opp_overlap 280357 280356 ATAATGATCGAAAAA GCGGCGCATCT GGGC AGGTGTGCCGC CAATTTCGGCCAGGG Avi_5280 281344 - 280508 - | creatinine amidohydrolase TERM 265 280819 - 280833 + g 75 -10 -3.70902 | GCTCAGGCGCGATTG CCAGCA TCA TGCTGG TTTCGATGTCGCCGC Avi_5281 282822 - 281341 - | oxidoreductase Avi_5282 283612 - 282815 - | ABC transporter potB 284487 - 283609 - | ABC transporter membrane spanning protein potG 285590 - 284484 - | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 266 285003 - 284983 - G 81 -11.1 -3.91196 | opp_overlap 284981 284979 GTGACATAGACGAAA GCAATGCCG AGG CGGCGTTGC AGGTCTTTCAGCTCG potF 286676 - 285594 - | ABC transporter substrate binding protein (putrescine) TERM 267 285984 - 285968 - G 70 -12.3 -2.8001 | opp_overlap 285965, overlap 285957 AGAAGGCGCAGGACA CTTCGCC TGT GGCGAAG AGATTGGTGAGGTCG TERM 268 286744 - 286770 + r 93 -12.4 -3.96148 | opp_overlap 286743 286748, overlap 286748 CAAACGGCCATAAGG CAAAGGCTATAG TGT CTATTGCCTTTG TTTGTGATGGGGCGG TERM 269 286748 - 286766 + r 84 -7.4 -4.59342 | opp_overlap 286748 286743, overlap 286744 CGGCCATAAGGCAAA GGCTATAG TGT CTATTGCC TTTGTTTGTGATGGG Avi_5286 287790 - 286789 - | transcriptional regulator LysR family Avi_5287 290641 - 287951 - | two component response regulator TERM 270 291379 - 291349 - g 76 -12.5 -3.01924 | opp_overlap 291344 CATGCTGGTGGAACA TGCGCTAACGCGG TCCGT CCGCGATAGCGCC GCCCTTCTGGATGCG gatA 290717 - 292138 + | glutamyl-tRNA amidotransferase subunit A Avi_5289 292179 - 293732 + | ABC transporter TERM 271 294412 - 294427 + G 75 -11.8 -3.20382 | opp_overlap 294404 GATTATATCCGCACG GCCCGC GCGC GCGGGC TTCGTGAGTATCAGG Avi_5290 293788 - 294711 + | ABC transporter membrane spanning protein (oligopeptide) dppC 294708 - 295556 + | ABC transporter membrane spanning protein (dipeptide) moaD 295553 - 296386 + | ABC transporter nucleotide binding/ATPase protein TERM 272 296774 - 296756 - g 70 -4.5 -4.46233 | opp_overlap 296756 296754 CCAATTGGAAAGAAA TCGGCGA GAGCG TTGCCGA TCTTCTAGAGAAAGT moaD 296383 - 297267 + | ABC transporter nucleotide binding/ATPase protein Avi_5294 297354 - 299003 + | ABC transporter nucleotide binding/ATPase protein (peptide) Avi_5296 299389 - 299838 + | transcriptional regulator MarR family TERM 273 300075 - 300063 - g 72 -4.7 -4.56597 | overlap 300064 GCGCTCTGCGAAAAA GGCGG CAT CGGCC ACGAACAGTCCAGCC TERM 274 300434 - 300407 - g 73 -11.2 -3.36492 | gap 1, opp_overlap 300428 CGCCGAACCGCAGAA GGCCGCACCCGCC ATT GCCGAG-GCGGCC CGCGACCGGGGCGCC TERM 275 300428 - 300449 + G 79 -12.9 -3.21099 | opp_overlap 300407 ACCCGCCATTGCCGA GGCGGCCCG CGAC CGGGGCGCC TTCATCCTCACCGAA Avi_5297 299916 - 301247 + | oxidoreductase TERM 276 301608 - 301634 + G 88 -11.6 -4.18494 | opp_overlap 301598 301597, overlap 301603 TCAAGGGACAGCTGA CTGTCGGCTTTT CCC AGGAGCCGACGG TTTTCAATCCGCATA Avi_5299 301451 - 303121 + | ABC transporter substrate binding protein (oligopeptide) TERM 277 303247 - 303216 - f 71 -10.7 -2.87132 | opp_overlap 303218 CTTTGTGCGCATATA TGGCGCACGGCGC TGTAGT GCGCCGGACGCCT CGGCGTCCGGCATGC TERM 278 304184 - 304206 + G 75 -9.8 -3.82191 | AGCCGTCTTCGCACT GATCGGCAGC CTT GTCGCCGATC TTCTTGTCGCATTCG Avi_5300 303297 - 304247 + | ABC transporter membrane spanning protein (oligopeptide) TERM 279 304814 - 304836 + G 71 -7.6 -3.9941 | overlap 304809 304815 ATTGTGGAAGCGGAG GTGCGTTCGC TGC GCGAGCGCGA TTTCGTTATGGCCGC Avi_5301 304280 - 305170 + | ABC transporter membrane spanning protein (oligopeptide) TERM 280 305219 - 305267 + F 100 -17.6 -5.00884 | opp_overlap 305222, overlap 305222 CAAACGAAAACAAGA AAAGCGAGAGTCTGTCAGGTCC AATCC GAACCTGACAGACTCTAGCTTC TTTTTTGAAAACCAT TERM 281 305264 - 305222 - f 100 -22.2 -5.10656 | opp_overlap 305219 305222 ACGAAAACAAGAAAA GCGAGAGTCTGTCAGGTCCA ATC CGAACCTGACAGACTCTAGC TTCTTTTTTGAAAAC TERM 282 305222 - 305264 + F 100 -19.3 -4.61482 | opp_overlap 305222, overlap 305219 ACGAAAACAAGAAAA GCGAGAGTCTGTCAGGTCC AATCC GAACCTGACAGACTCTAGC TTCTTTTTTGAAAAC xylR 305336 - 306475 + | transcriptional regulator ROK family Avi_5304 306472 - 307239 + | ABC transporter nucleotide binding/ATPase protein Avi_5305 307276 - 308316 + | ABC transporter, binding protein TERM 283 308328 - 308349 + F 100 -17.3 -3.80893 | GTGAACGGCCTTCAT TCCGGGGCC TGAT GGCCCCGGA TTTCCCTTCTCCAAT rbsC 308369 - 309373 + | ABC transporter membrane spanning protein (ribose) Avi_5308 309370 - 310140 + | dehydrogenase Avi_5309 310734 - 310237 - | Transcriptional regulator Avi_5310 310912 - 311457 + | flavoprotein oxidoreductase Avi_5311 311704 - 312987 + | indole dioxygenase Avi_5313 313060 - 314382 + | MFS permease Avi_5314 314409 - 315788 + | Carbohydrate-selective porin Avi_5315 315851 - 316270 + | hypothetical protein attY 316343 - 316933 + | glutathione S-transferase Avi_5318 316946 - 317845 + | oxidoreductase TERM 284 317929 - 317970 + F 74 -7.6 -4.09243 | gap 1, overlap 317928 317926 AGTTCGTATTCCGCT CTT-GAATATCTCAAGGCT TTGAT AGATTTGAGATATTCGAAG TTTTCCCAGGGTCTG Avi_5319 318061 - 318951 + | hypothetical protein TERM 285 319230 - 319189 - g 80 -5.1 -4.87665 | opp_overlap 319194 GCCGATCCACAAAAA TTCCTGGCCATCGGCATGA ATTA TCAGGCCCATGCCGAAGAA GCGGCTGCGGCGGGT Avi_5320 318967 - 319818 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 286 319952 - 319973 + F 86 -6.6 -4.96848 | overlap 319943 ATGCCTTCTTCAAGG CGAGGATG CGTTGA CATCTTCG TTTTTGTATGGGGAG Avi_5321 319994 - 321124 + | dehydrogenase Avi_5322 322455 - 321142 - | glycosylase TERM 287 321698 - 321683 - G 72 -5.4 -4.51196 | opp_overlap 321674, overlap 321685 GTGAAACTCAGAAAA TCCTGG GTTT CCAGAA GCTCCGAGCGGATCG Avi_5324 324770 - 322491 - | glycosyltransferase TERM 288 322592 - 322602 + g 78 -8.2 -4.43477 | opp_overlap 322578, overlap 322584 AGCAGAGCACGGATT CCGC TCC GCGG TTTTCGTTGGCTCGA Avi_5325 325237 - 324890 - | hypothetical protein TERM 289 325508 - 325526 + r 76 -7.4 -4.15044 | opp_overlap 325504, overlap 325504 CTCGAAAAGACTGTC GGAAGACA TGT TGTCCTCC TTTATTGGGGCCAGG TERM 290 325696 - 325728 + r 100 -17.2 -4.07568 | gap 1, overlap 325698 TAACCGTTTCTCGCT TG-GCGTAACCGCTG ACAT CAGCGGTTACGCTCA TTTTGGGAGCGGAGA TERM 291 325698 - 325725 + r 100 -20 -3.08032 | overlap 325696 ACCGTTTCTCGCTTG GCGTAACCGCTG ACAT CAGCGGTTACGC TCATTTTGGGAGCGG catE 327915 - 325759 - | catalase C TERM 292 328028 - 328002 - R 100 -15.2 -3.31322 | opp_overlap 328002 CGCAACCGGTCACAA TGCGACGCGG ACATCTG CCGCGTCGCA TTCCGTCACCATCAG TERM 293 328002 - 328028 + r 95 -15.2 -3.06183 | opp_overlap 328002 CGCAACCGGTCACAA TGCGACGCGG ACATCTG CCGCGTCGCA TTCCGTCACCATCAG Avi_5327 329682 - 328078 - | phosphate transporter TERM 294 328697 - 328707 + g 71 -6.8 -4.2349 | overlap 328683 328695 GTCTTGACGGCATCC GCCA CGG TGGC TTTTGCATCTGCGAC TERM 295 330064 - 330017 - H 83 -12.1 -3.28712 | GTTTGGCTGTCATAA TGCCGCCCCATTACACGCTCC GTCGAA GGAGCGCATAATGATGCAACA TTCTCTAAAACTGGC TERM 296 330347 - 330370 + G 75 -8.8 -3.97368 | gap 1, opp_overlap 330331 330347 330346 330344, overlap 330350 CGTGCGGCAGAACAT CGCCACA-CCG CTG CGGATGCGGCG TTTGTCGCTTGCGGG Avi_5328 330054 - 331229 + | ABC transporter nucleotide binding/ATPase protein TERM 297 331323 - 331334 + G 76 -7.2 -4.44797 | overlap 331305 GTGGTCTGTTGTTTG CGGC CCCG GCCG TTTTGCTGTTGCTGG TERM 298 331957 - 332014 + G 84 -12.8 -3.72632 | gap 1, opp_overlap 331990, overlap 331960 332003 ATCGATCTCGGCTTT CAAGGTTTTCGAGACGGTGGCGGTACT GACCA AGGGCCGGT-CCGGCTCGGAAACCTTG TTGTTCGATCTCTAT TERM 299 331960 - 332011 + G 75 -8.7 -3.98378 | gap 1, opp_overlap 331990, overlap 331957 332003 GATCTCGGCTTTCAA GGTTTTCGAGACGGTGGCGGTACT GACCA AGGGCCGGT-CCGGCTCGGAAACC TTGTTGTTCGATCTC Avi_5329 331226 - 332152 + | ABC transporter membrane spanning protein TERM 300 332340 - 332376 + G 75 -10.1 -3.67634 | opp_overlap 332324, overlap 332338 332342 GGCCGCCAGTCAGGT GCCGATGGCCCGCTTCA TGC TGAATGGGGTCATCGTC TGTTTTGGCATCCTG TERM 301 332342 - 332374 + G 73 -11.3 -3.41366 | opp_overlap 332324, overlap 332340 332338 CCGCCAGTCAGGTGC CGATGGCCCGCTTCA TGC TGAATGGGGTCATCG TCTGTTTTGGCATCC TERM 302 332617 - 332669 + G 87 -9.8 -4.58395 | gap 1, opp_overlap 332620, overlap 332620 ATCTTCCTGTTCCAC CAATCCTTCCGCAGCTATCCCGATG AAAT CATCGAGGCGGC-GCGGATGGATGG TTTTTCCGAGATGGA Avi_5330 332149 - 332973 + | ABC transporter TERM 303 333264 - 333284 + G 72 -5.3 -4.55697 | overlap 333266 333267 TCCTGCGCGCTGCCG TGACCGGCA ATC TGCCGGATG TTTATTTCTCAGGCT Avi_5331 333017 - 334312 + | ABC transporter substrate binding protein (sugar) TERM 304 334368 - 334395 + T 100 -13.4 -4.07568 | opp_overlap 334362, overlap 334369 CTTTGAAGACCGGCA AGGCTGCGGGGA ATGT TCTCCGCAGCCA TTTTCCAGAAAGACG TERM 305 334369 - 334394 + T 100 -16.9 -3.04398 | opp_overlap 334362, overlap 334368 TTTGAAGACCGGCAA GGCTGCGGGGA ATGT TCTCCGCAGCC ATTTTCCAGAAAGAC TERM 306 335333 - 335292 - T 100 -21.7 -3.54424 | opp_overlap 335293 335300, overlap 335293 335300 TTGCATTTTTCTAAA TCCAAAAACCGCACCGCTG TCTC CAGCGGTGCGGTTTCCGGT ATCGTCTTATCGCTG TERM 307 335332 - 335293 - T 100 -25.2 -2.72511 | opp_overlap 335293 335300, overlap 335292 335300 TGCATTTTTCTAAAT CCAAAAACCGCACCGCTG TCTC CAGCGGTGCGGTTTCCGG TATCGTCTTATCGCT TERM 308 335293 - 335332 + T 100 -20.8 -2.94993 | opp_overlap 335292 335293 335300, overlap 335300 TGCATTTTTCTAAAT CCAAAAACCGCACCGCTG TCTC CAGCGGTGCGGTTTCCGG TATCGTCTTATCGCT TERM 309 335325 - 335300 - T 100 -20.5 -4.81249 | opp_overlap 335300 335293, overlap 335293 335292 TTCTAAATCCAAAAA CCGCACCGCTG TCTC CAGCGGTGCGG TTTCCGGTATCGTCT TERM 310 335300 - 335325 + T 100 -20.5 -3.64866 | opp_overlap 335293 335292 335300, overlap 335293 TTCTAAATCCAAAAA CCGCACCGCTG TCTC CAGCGGTGCGG TTTCCGGTATCGTCT vdh 336872 - 335340 - | vanillin: NAD oxidoreductase TERM 311 335405 - 335418 + g 74 -2.3 -4.96848 | opp_overlap 335365 335404, overlap 335406 ATTTGCCATTAAAGC GTCCG AGAC CGGAG TTTTTCTCTCCACCA TERM 312 336289 - 336260 - G 71 -7.7 -4.08767 | TCGACGGTTTCAAAA CGACGGCGTTTCC AAGC GCAAGCGCCGGCG CGACAGAGCGGTTCG Avi_5336 338479 - 337043 - | glucokinase Avi_5337 339408 - 338494 - | aldolase TERM 313 340132 - 340147 + G 76 -6.8 -4.42386 | AGGCCGCCGATCAGT TGGGTG GCAG CGCCCA TTTTCTACATGCGCC Avi_5338 339684 - 340625 + | transcriptional regulator TERM 314 340630 - 340619 - f 71 -3 -4.83759 | AACGAAAGCGAAAAA GAAA TAAG TTTC TGAAAAAAATTTCTT TERM 315 341078 - 341063 - g 78 -6 -4.57569 | overlap 341065 GCAGCCGTTGAAAAA GGCCGC GGAT GCGGGC ATTCCAATGATCACG TERM 316 341704 - 341680 - g 70 -3.6 -4.71426 | gap 2, opp_overlap 341694 CTGTCATCAACAAAA GCAACGTGACTG ATC CAG-C-CGTCGC TCGGTTCATCTACGC rbsB 340737 - 341726 + | ABC transporter substrate binding protein (ribose) rbsC 341848 - 342894 + | ABC transporter membrane spanning protein (ribose) Avi_5342 342884 - 343633 + | ABC transporter cbr 343674 - 344402 + | carbonyl reductase dapE 345795 - 344389 - | succinyl-diaminopimelate desuccinylase TERM 317 344551 - 344533 - G 74 -13.2 -2.96249 | overlap 344527 344530 GCCTACTAACAAGGA GTCCATGC CGA GCATGGAC TGAAAGCTGCCGACA TERM 318 345522 - 345499 - G 71 -11 -3.28712 | GTCGTTTTGCCATAA GTTCAGCGGG TCCA CCGGCTGAAC ATCGTAATGGCCGTA mdeA 347010 - 345838 - | methionine gamma-lyase TERM 319 346128 - 346099 - G 74 -6.3 -4.49337 | gap 1, overlap 346101 346102 GAAGATGAAGGAAAA CAGCCCGGACGTGC CAT GCAGGCCCGG-CGG CAAGCCATTGTTCAG Avi_5347 347735 - 347007 - | transcriptional regulator GntR family TERM 320 347931 - 347919 - H 85 -3.3 -5.4251 | CGCACACATAAAAAA TGAGG GTG CCGCA AAGGCGCGAACAAAC TERM 321 348294 - 348272 - g 71 -10.6 -3.60792 | CGTTCAAGCTGGAAA GCTGGAATCG CGG CGATTCCATC ACCATGACCCGCAAC dppA 347965 - 349584 + | ABC transporter substrate binding protein (dipeptide) TERM 322 349623 - 349648 + F 79 -4.5 -4.88067 | overlap 349602 349627 GCTAGGCGTAAATGT CGGGCCCGGCG TGTC TGGCGGGGTCG TTTTTATACGTGGCT TERM 323 349825 - 349784 - f 72 -8.7 -3.73107 | gap 1, overlap 349791 349795 CGAGCAAAGGGTAAA CTCCAAAGCGATCTCCCCCC TTG AGGGGGAGAT-GCCCGGCAG GGCAGAGGGGGGTAT TERM 324 349818 - 349791 - f 91 -12.8 -3.71917 | gap 1, overlap 349784 349795 AGGGTAAACTCCAAA GCGATCTCCCCCC TTG AGGGGGAGAT-GC CCGGCAGGGCAGAGG TERM 325 349815 - 349795 - f 81 -13.3 -2.6704 | overlap 349791 349784 TAAACTCCAAAGCGA TCTCCCCCC TTG AGGGGGAGA TGCCCGGCAGGGCAG TERM 326 350064 - 350041 - g 70 -2.2 -4.83169 | opp_overlap 350042, overlap 350042 ATGCTGGGAGAAAAA GCCACCGCCG AGAC CTGCGCTGGT TTCATCACGCGCTAC TERM 327 350095 - 350106 + G 86 -5.8 -5.07011 | GGCTTCGATAAGCCG CTGC CAAC GCAG TTTTTCATTTATATG TERM 328 350327 - 350344 + G 71 -11.3 -3.25102 | overlap 350296 350319 350325 350334 350335 TGATTGTTGCCAATG CCGGCAT TTCC ATGCCGG TGTTCTGGCTGGGGT TERM 329 350412 - 350428 + G 71 -10.8 -3.55071 | overlap 350417 CACGCCCTTCTGGCT GCCGCC ATCCG GGCGGC TTTCCGCCGGTGTCA dppB 349915 - 350994 + | ABC transporter membrane spanning protein (dipeptide) dppC 351003 - 351956 + | ABC transporter membrane spanning protein (dipeptide) Avi_5352 351928 - 352980 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5354 352977 - 353951 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5355 353972 - 355117 + | proline dipeptidase Avi_5356 355234 - 355950 + | transcriptional regulator GntR family TERM 330 357043 - 357010 - g 88 -10.3 -4.4267 | gap 1, opp_overlap 357036, overlap 357011 357012 GTCGAAAAGGCAAAA GC-CCTGGTCAAAGCC GCT GGATTTGACCGGGTGC CGATTGAGTTGCAGG TERM 331 357040 - 357011 - g 71 -11.5 -3.24879 | gap 1, opp_overlap 357036, overlap 357010 357012 TCGAAAAGGCAAAAG CCCTGGTCAAAGCC GCT GGATTTGACC-GGG TGCCGATTGAGTTGC dppA 356002 - 357510 + | ABC transporter substrate binding protein (dipeptide) TERM 332 357548 - 357588 + F 71 -10.5 -2.93723 | gap 1, opp_overlap 357547 357551, overlap 357543 ATCCTGTCACGGAAG CGATCTTTGTCAGGCGGC AGGTCC GCCGCCTGACACAAA-CG TCTCATTCATCCGGA TERM 333 357586 - 357551 - f 90 -14.8 -2.54896 | opp_overlap 357548 357543, overlap 357547 CTGTCACGGAAGCGA TCTTTGTCAGGCGGCA GGTC CGCCGCCTGACACAAA CGTCTCATTCATCCG dppB 357611 - 358558 + | ABC transporter membrane spanning protein (dipeptide) dppC 358555 - 359424 + | ABC transporter membrane spanning protein (dipeptide) TERM 334 359918 - 359901 - g 70 -4.1 -4.60487 | TATTATGCCGAAAAA GGCCA TCCGGTTC TGGCC AGAGTTTCGGCCACC TERM 335 360687 - 360671 - g 74 -7.9 -4.1899 | opp_overlap 360664 GCATTTGAGCGAAAA GCGCGGT GAT ACCGTGC ATATCGATGTGATCG ggt 359472 - 361256 + | gamma-glutamyltransferase TERM 336 361410 - 361430 + G 71 -11.1 -3.28924 | opp_overlap 361422 TGTCATTTGATGTGA TGGCGGGTG AAA CGCTCGCCA TTGTCGGGGAGAGTG moaD 361301 - 363136 + | ABC transporter nucleotide binding/ATPase protein gsp 364318 - 363164 - | glutathionylspermidine synthetase TERM 337 364096 - 364109 + g 74 -8.1 -4.10657 | overlap 364090 GGATGGCTAGCCGGT CGAGG ACCT CCTCG TTTTCAACGATGTCA Avi_5364 364922 - 364320 - | hypothetical protein Avi_5365 365334 - 364933 - | hypothetical protein TERM 338 365009 - 365021 + g 78 -7.7 -4.4648 | opp_overlap 365009 AGGCCTGCGGCAATA TCACC GGC GGTGA TTTTCTCATGCAGAT Avi_5366 366021 - 365362 - | hypothetical protein Avi_5367 366301 - 366747 + | hypothetical protein Avi_5368 366720 - 367481 + | hypothetical protein TERM 339 367533 - 367566 + T 100 -13.2 -4.43879 | opp_overlap 367524 367534, overlap 367534 AGAGAACCCGAAACA ATCCGGGTGGAACG CTGATA TGTTCCACCCGGAA TTTTAATTAAATAAT TERM 340 367565 - 367534 - T 100 -16 -3.97689 | opp_overlap 367533 367534, overlap 367524 GAGAACCCGAAACAA TCCGGGTGGAAC GCTGATAT GTTCCACCCGGA ATTTTAATTAAATAA TERM 341 367534 - 367565 + T 100 -16.7 -3.25604 | opp_overlap 367524 367534, overlap 367533 GAGAACCCGAAACAA TCCGGGTGGAACG CTGATA TGTTCCACCCGGA ATTTTAATTAAATAA Avi_5370 368919 - 367573 - | dicarboxylate carrier protein fadD 370562 - 369048 - | long-chain-fatty-acid-CoA-ligase TERM 342 369424 - 369463 + g 72 -9.2 -3.64716 | opp_overlap 369396, overlap 369423 ATCTTGCCGAGATCG CCGCTGATGAAGAAACCG TCGG CGGTAAATTCAGCAGCGG TCTTTTCAGGCATCC Avi_5372 372056 - 370659 - | malonyl-CoA decarboxylase TERM 343 371230 - 371218 - G 74 -6.3 -4.46212 | TGCTTGATGAGAAAA TTTCC GAA GGAAA TGCCGCGAAGCCCGT TERM 344 372077 - 372101 + H 75 -4.8 -4.85396 | overlap 372078 ATTCCTCCGATCATC AGGACGGCGC CCCCC GCGCTGCCCC TTTTATTATCATTGT Avi_5373 372224 - 372874 + | transcriptional regulator GntR family TERM 345 374378 - 374400 + G 70 -4 -4.56597 | overlap 374379 TGGCCTATGAAAACG GCGAGCCAGC GGT GCTGCTTGGC TTTTTACAGGAAGAG TERM 346 374618 - 374638 + G 71 -10.3 -3.63569 | TGCAAAGCGGCAATT GCTGGGGCG ATG CGACCCGGC TTCTTGCGCCGTTGC Avi_5374 372952 - 375291 + | two component response regulator TERM 347 375891 - 375909 + G 72 -6.6 -4.3453 | ACTGTTTTCCATGGT CGGCGTCA CGG TGCCGTCG TTTCTGTTTGCCATT TERM 348 376003 - 376017 + G 81 -8.5 -4.28323 | overlap 376009 GATCTTCACGCCCCC GCCGG GCCAA CCGGC TTTCTGTTGGTTGAT Avi_5375 375466 - 376494 + | ABC transporter membrane spanning protein (dipeptide) TERM 349 377214 - 377234 + G 75 -5.3 -4.56597 | overlap 377215 CCAGACCTCGGCTCG ATGGTGGCC GAT GGCCGTCAG TTTTTGCCGGAAAAA Avi_5376 376491 - 377351 + | ABC transporter membrane spanning protein (dipeptide) Avi_5377 377354 - 379021 + | ABC transporter nucleotide binding/ATPase protein (dipeptide) TERM 350 380478 - 380468 - g 70 -2.4 -4.77157 | overlap 380469 GGAAGCCACGAAAAA CGCC GTT GCCG CAGGCGCTGATCCCA Avi_5378 379047 - 380600 + | hydantoinase TERM 351 381367 - 381343 - g 75 -5.6 -4.60041 | overlap 381349 AGCCATCTGCAAAAA GGAGAACGGC AAAAA GCTGTTCACC GGTAAAATCAGCGAT Avi_5379 380597 - 381721 + | hypothetical protein Avi_5380 381823 - 382800 + | hypothetical protein TERM 352 383660 - 383670 + G 80 -2.4 -5.27938 | opp_overlap 383635 383632 GTCCAGACCACACCA ACGG CCA CCGG TTTTTATTTGAAACT Avi_5381 382841 - 384415 + | ABC transporter substrate binding protein (dipeptide) Avi_5382 384910 - 384434 - | two-component system regulatory protein Avi_5383 387261 - 384907 - | Signal transduction histidine kinase TERM 353 385682 - 385667 - G 83 -4.6 -5.03715 | overlap 385669 AGCACTTGCAAAAAA CGGCGA CGAT CCACCG CAACAATAGTTTGGC narL 387911 - 387261 - | two component response regulator TERM 354 387563 - 387537 - G 72 -5 -4.65895 | overlap 387538 TCCGGTATCGAAAAA TTCCTGACCGTC CAG AACGGCCCGGAT CATCCGCAACAATGT Avi_5386 389003 - 387918 - | two component sensor kinase TERM 355 388599 - 388622 + g 81 -13.2 -3.61902 | gap 1, opp_overlap 388598 GCGCTCGGCAAGCAT CAGGAGCAGGG CTT CCC-GCTCCTG TTCTCTGTCATCGGC Avi_5387 389202 - 389666 + | hypothetical signal peptide protein TERM 356 389670 - 389725 + T 72 -7.9 -3.97834 | gap 3, opp_overlap 389668 389673, overlap 389670 389672 389673 CGCACGTCGTAAAGG CA-A-GTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGACATCTG TTTATGCTGCGGTTC TERM 357 389670 - 389723 + T 77 -9.7 -3.57674 | gap 1, opp_overlap 389668 389673, overlap 389670 389672 389673 CGCACGTCGTAAAGG CAAGTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGACATC TGTTTATGCTGCGGT TERM 358 389672 - 389721 + T 83 -12.3 -3.36228 | gap 1, opp_overlap 389668 389673, overlap 389670 389670 389673 CACGTCGTAAAGGCA AGTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGACA TCTGTTTATGCTGCG TERM 359 389720 - 389673 - T 100 -15.8 -3.27704 | gap 1, opp_overlap 389672 389670 389670 389673, overlap 389668 ACGTCGTAAAGGCAA GTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGAC ATCTGTTTATGCTGC TERM 360 389673 - 389720 + T 95 -15.8 -2.61255 | gap 1, opp_overlap 389673 389668, overlap 389672 389670 389670 ACGTCGTAAAGGCAA GTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGAC ATCTGTTTATGCTGC Avi_5388 391001 - 389727 - | glucose/galactose transporter TERM 361 391298 - 391315 + r 88 -8.3 -4.67354 | overlap 391295 GTGCAATTTGAGGGA CCGAGCC TTTC GGCCCGG TTTTCTCTATGTGTT TERM 362 391372 - 391418 + r 72 -10.1 -3.30243 | opp_overlap 391355 391370 391372 391373, overlap 391376 391377 GAAGATGTGTAAACA TCCTCCAGCATCGTGCGGT TTCCAGTTT GCCGCACGATGCTGGTGCC TTGTGACGCCTGGGT TERM 363 391417 - 391373 - R 81 -12.9 -2.62439 | opp_overlap 391372 391376 391377, overlap 391355 391372 391370 AAGATGTGTAAACAT CCTCCAGCATCGTGCGG TTTCCAGTTTG CCGCACGATGCTGGTGC CTTGTGACGCCTGGG TERM 364 391376 - 391414 + r 100 -18.3 -2.5955 | opp_overlap 391355 391373 391372 391370, overlap 391372 391377 ATGTGTAAACATCCT CCAGCATCGTGCGGT TTCCAGTTT GCCGCACGATGCTGG TGCCTTGTGACGCCT Avi_5390 392470 - 391433 - | ABC transporter nucleotide binding/ATPase protein cysW 393354 - 392485 - | sulfate ABC transporter permease protein CysW cysT 394198 - 393341 - | sulfate ABC transporter permease protein CysT TERM 365 394157 - 394121 - G 75 -10.8 -3.71687 | gap 1, overlap 394112 GTAAAACACCGTAAA GCCGAACG-TCAACCCG AATC CGGGAAGAACGCTCGGC TGACGGAATTGCCAC Avi_5393 395242 - 394226 - | ABC transporter substrate binding protein (sulfate) TERM 366 394899 - 394909 + g 71 -6.8 -4.20806 | overlap 394892 GTATAGGGCGAACTG CTGC TTG GCAG TTTGGTTTTCCAGTC thuR 396473 - 395436 - | transcriptional regulator LacI family Avi_5395 396927 - 397967 + | hypothetical protein Avi_5396 397974 - 398912 + | hypothetical protein TERM 367 399722 - 399690 - g 72 -4.8 -4.68994 | ATCATGACCGAAAAA CTGGCCTCGC CGGATACGCTAAC GCGCGGCCAG TGGGATTCGACCGGC Avi_5398 399009 - 400220 + | ABC transporter substrate binding protein (sugar) thuF 400358 - 401260 + | ABC transporter membrane spanning protein (sugar) Avi_5400 401257 - 402084 + | ABC transporter membrane spanning protein (sugar) Avi_5401 402081 - 403181 + | ABC transporter nucleotide binding/ATPase protein TERM 368 403198 - 403218 + F 70 -4 -4.61482 | AATTTTCCGCTTGTT GTGTTCTA TTTAT TAGAGCGC TTATTTTTTGACCGA TERM 369 403806 - 403835 + G 83 -13.7 -3.55444 | gap 1 GGCTGGATGTGACGA TTGCCTCGGGTCGA GGC TCGAC-CGAGGCGA TTTCGAAACTGGCGG Avi_5403 403631 - 404620 + | hypothetical protein Avi_5404 404626 - 405399 + | ABC transporter nucleotide binding/ATPase protein Avi_5406 405455 - 406210 + | ABC transporter membrane spanning protein Avi_5408 406328 - 407311 + | flavonol synthase/dioxygenase TERM 370 407384 - 407356 - f 100 -16.8 -3.05022 | gap 1 GTGGCCAGACAGACA GCG-GACAGGGGC AACC GCCCCTGTCGCGC GACGGGAACGCTGAT Avi_5409 407398 - 408300 + | LysR family protein TERM 371 409401 - 409436 + G 81 -3.8 -5.1287 | overlap 409386 409400 409405 CGCGCCGCCGGTATC CGCGTCGCGGTTGCTG GTGA CAATTGCCGCGATCCG TTTTTTGCCTATGGC Avi_5410 408372 - 409754 + | cytosine deaminase Avi_5411 412758 - 409732 - | beta-galactosidase TERM 372 413298 - 413272 - g 80 -4.5 -5.02074 | gap 1, overlap 413275 413288 GGATCTGGCAAAAAA GAC-TGGCCTAT CGAA ACAGACCATGTC CGAGGTCATACGCAC TERM 373 413395 - 413406 + G 76 -7.2 -4.48072 | GACCTATGAAGTCGC CCCG GATG CGGG TTTTGTCATCGGTAT TERM 374 414058 - 414093 + G 72 -8.8 -3.83102 | opp_overlap 414078 GGGCGACGCAAAGGC GCTGGCAACCGTGCAG GAAA CAGCGCGGCTGGCGGC TTTGCTGGTGGTTTC Avi_5412 413162 - 414352 + | transcriptional regulator ROK family Avi_5413 415171 - 414368 - | transporter formate/nitrite transporter family TERM 375 414665 - 414647 - G 86 -12.4 -4.07306 | overlap 414635 AGAGGCAATCAGAAA GCCTGCCG GGG CGGCAAGC AGCAATGTCGTTGCA TERM 376 415336 - 415354 + r 74 -8 -4.10161 | ACCCATTCGGTTCCA GCGGCAGC TAT GTCGCCGC TTTTCCGCGCTGATC Avi_5414 416759 - 415368 - | chlorohydrolase family protein Avi_5416 417603 - 416752 - | vanillate O-demethylase oxygenase subunit Avi_5417 418562 - 417627 - | ABC transporter membrane spanning protein (sugar/ribonucleotide) Avi_5418 419620 - 418574 - | ABC transporter membrane spanning protein (sugar) Avi_5419 421208 - 419613 - | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 377 421239 - 421263 + r 76 -10.7 -3.3487 | gap 1, overlap 421237 421235 421240 421253 ATGAGAGACTGCGAA G-GGCCGGGC ATCATC GCCCGGCCTC TATATTTGGTTGGGT TERM 378 421240 - 421261 + r 95 -14.4 -3.23456 | overlap 421239 421237 421235 421253 TGAGAGACTGCGAAG GGCCGGGC ATCATC GCCCGGCC TCTATATTTGGTTGG Avi_5420 422394 - 421282 - | lipoprotein TERM 379 421642 - 421659 + g 70 -4 -4.57073 | GTCGGTGTTCCACAT CGCAGC CCAGAC GCCGCG TTTTTCGGCGACCTG TERM 380 422153 - 422169 + g 75 -3.7 -4.8622 | TCGACCTCGAGGATC TTCTTCA GCT TGGGGAA TTTTTCCTTGACGGC TERM 381 422699 - 422661 - H 95 -6 -5.45726 | opp_overlap 422669, overlap 422663 CATAGTCGAAAAAAA TCGCTCAAGATGATGCGT GAA AGGCAACATCTTGACTGA AAAAAATGCTTGTAA TERM 382 422990 - 423000 + H 77 -8.2 -4.08706 | opp_overlap 422990, overlap 422979 GGCTTGCAGCGAAAA CCGC GTT GCGG TTTGTGTCATCGGGC TERM 383 423000 - 422990 - H 78 -8.2 -4.18018 | opp_overlap 422979 422990 GGCTTGCAGCGAAAA CCGC GTT GCGG TTTGTGTCATCGGGC Avi_5422 423154 - 423846 + | oxidoreductase protein Avi_5423 423846 - 424478 + | Gst12 glutathione-S-transferase ade 424533 - 426332 + | adenine deaminase TERM 384 426818 - 426851 + G 100 -16.1 -4.11216 | gap 1 GTGCCGCGTACCGTG CGCCGCATTGCCAGCG TGT CGCTGCCAAT-CGGCG TTTTGGCCCTGCCGG TERM 385 427135 - 427162 + G 71 -11.3 -3.26471 | TGTGCCGCTTTCCGA CAGCCGCTTGC CGAACC GCAAGCTGCTG TTGCTGTCGCGCTCC Avi_5425 426332 - 427282 + | Transcriptional regulator Avi_5426 427376 - 427876 + | Sulfopyruvate decarboxylase alpha subunit Avi_5427 427873 - 428481 + | thiamine pyrophosphate-requiring enzyme TERM 386 429833 - 429874 + F 72 -5.1 -4.49958 | gap 1, opp_overlap 429828, overlap 429829 429835 AGACACAAAACTGTC GAGGGACGGCC-TTCGGGAT TTC ATCCGTAACGGCTGTTCCAC TTTCTTTCATCCCGT TERM 387 430200 - 430178 - g 83 -7.6 -4.62783 | opp_overlap 430178, overlap 430180 CATGGATGCGAAAAA CAGCGTCATC TCT GATGGCGCGG TTGCTATTGAGGACG TERM 388 430198 - 430180 - g 72 -8.8 -3.92746 | opp_overlap 430178, overlap 430178 TGGATGCGAAAAACA GCGTCATC TCT GATGGCGC GGTTGCTATTGAGGA Avi_5431 430113 - 431513 + | chlorohydrolase TERM 389 431826 - 431859 + G 72 -6.7 -4.30014 | overlap 431812 431811 431809 TGCGGGCATCGGGCC TGCGTGTTGTCGAGA ATTT TCTCGATATGGCGCA TTTTCCCTTCGTGCA Avi_5432 431510 - 432376 + | phenylpropionate dioxygenase TERM 390 432963 - 432981 + G 77 -10.2 -3.83026 | opp_overlap 432933 TCGGGCGGGGCAGAG CCGTGTCG ATG CGGCGCGG TTTGCTGTCGGCGGC Avi_5433 432376 - 435522 + | dehydrogenase xdhA 435519 - 436004 + | xanthine dehydrogenase TERM 391 436070 - 436041 - g 72 -5 -4.57073 | gap 1, opp_overlap 436068, overlap 436044 TATCGGCCCGAAAAA CGACGGCGCCAAA GCCTT TCTGGC-CCACCG CCGTAAGCAGATCCT dhaS 436006 - 437520 + | aldehyde dehydrogenase pcaI 437682 - 438389 + | 3-oxoadipate CoA-transferase subunit A TERM 392 438541 - 438559 + G 71 -10.2 -3.53012 | opp_overlap 438516 CGAAAACGGAATGCT GGGGATCG GGC CGTTCCCC TTTGAGGGCGAAGAG pcaJ 438389 - 439036 + | 3-oxoadipate CoA-transferase subunit B TERM 393 439065 - 439098 + F 100 -25.5 -5.08088 | opp_overlap 439065 GCTAGTCATGCCAAA GCCCCTACAGCGTCT GATC AGACGCTGTAGGGGC TTTTTATTGGGCATT TERM 394 439098 - 439065 - f 100 -25.5 -3.61178 | opp_overlap 439065 GCTAGTCATGCCAAA GCCCCTACAGCGTCT GATC AGACGCTGTAGGGGC TTTTTATTGGGCATT TERM 395 439143 - 439155 + F 81 -6.3 -4.77157 | opp_overlap 439143, overlap 439135 AGATTGCTCATAAAA TTGGT CCT ACCAA TTTTTGATGAATTGG TERM 396 439155 - 439143 - f 72 -6.3 -4.38154 | opp_overlap 439135 439143 AGATTGCTCATAAAA TTGGT CCT ACCAA TTTTTGATGAATTGG TERM 397 439677 - 439687 + G 74 -8.2 -4.13945 | CAGAGCCAGGCGCGC GCCG ATG CGGC TTTTCACATGGCAAT Avi_5438 439260 - 440015 + | transcriptional regulator GntR family TERM 398 440685 - 440655 - g 85 -9.6 -4.4648 | opp_overlap 440659 440663 ATCGCCAGCAGAAAA CCAATCTGGCCGAC TAT GTCGGCTGGCTTGG TGAAAATTTCGACCC lldA 440012 - 441151 + | L-lactate dehydrogenase Avi_5440 441497 - 442336 + | hypothetical protein Avi_5441 442385 - 443236 + | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Avi_5443 443429 - 445072 + | 3-(3-hydroxyphenyl)propionate hydroxylase; 3-(3-hydroxy-phenyl)propionate hydroxylase FAD/NAD(P)-binding TERM 399 445338 - 445324 - f 74 -5.8 -4.55491 | opp_overlap 445326 TATTTAATTATAAAA TATCAT AAA ATGATA ATTAAAATTTTAAAT livJ 445697 - 446917 + | ABC transporter substrate binding protein (branched amino acid) livH 447089 - 447946 + | ABC transporter membrane spanning protein Avi_5446 447956 - 448954 + | ABC transporter membrane spanning protein (branched chain amino acid) Avi_5447 448951 - 449694 + | ABC transporter nucleotide binding/ATPase protein TERM 400 449941 - 449961 + G 83 -7.6 -4.59853 | gap 1, overlap 449944 GGCTTGGCATAGGCT TCGTGCCGC AGGA GCGGCA-GA TTTTTGCCACGTTGA TERM 401 450085 - 450074 - g 72 -4.4 -4.59853 | opp_overlap 450075, overlap 450075 CGAACGGCGGAAAAA TGGT GGCA ACCA GCTTTCCGGTGGAGA livF 449691 - 450398 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) hppD 452307 - 450460 - | 4-hydroxyphenylpyruvate dioxygenase Avi_5451 452505 - 453230 + | transcriptional regulator TetR family aroQ 453648 - 453205 - | 3-dehydroquinate dehydratase aroE 454514 - 453645 - | shikimate 5-dehydrogenase Avi_5456 455344 - 454586 - | ABC transporter nucleotide binding/ATPase protein (amino acid) TERM 402 455208 - 455255 + g 90 -17.1 -3.42257 | gap 1, opp_overlap 455225 GTCGATTTTCCGGAG CCGGACGGCCCGCAAAGGACGA TTTTT TCG-CCTTTGCGGACTGTCAGG TTGATGTCTTTCAGC Avi_5457 456197 - 455358 - | ABC transporter substrate binding protein (amino acid) TERM 403 455960 - 455943 - G 72 -8.4 -3.87815 | opp_overlap 455942 GGCCAGCGGCACAAA CTCGGC CTTGAC GCCGAG ATAGTCTGCATAGGC TERM 404 456301 - 456351 + r 90 -9.6 -4.51238 | overlap 456333 TGTATTGAGGAAAGC CGGTTTCTACACGTCGTCTGGTAA ACC TTACCGGGCGGCGGCTTGCAGCCG TTTCTCTTTTCTGGC TERM 405 456333 - 456357 + r 72 -6.3 -4.36914 | overlap 456301 CTGGTAAACCTTACC GGGCGGCGGCT TGC AGCCGTTTCTC TTTTCTGGCGCCCCA Avi_5458 456978 - 456328 - | ABC transporter membrane spanning protein (amino acid) TERM 406 456912 - 456886 - G 71 -7.8 -3.98804 | opp_overlap 456900 456903, overlap 456887 456901 GCAAAGGCCAAAGAA TCCGCCGCCGAC AAA GCCGATGGCGGT CAACGCCAGCGTCCA Avi_5459 457657 - 456989 - | ABC transporter membrane spanning protein (amino acid) TERM 407 458057 - 458095 + r 95 -12.6 -4.08692 | opp_overlap 458048 458067, overlap 458061 AATATAGACGCTCAT CTTATACGAAGAGTCATT GAA GATGACTCTTCGTATTCG TTTTGCAACGCCTTC TERM 408 458061 - 458091 + r 100 -16.4 -3.66908 | opp_overlap 458048 458067, overlap 458057 TAGACGCTCATCTTA TACGAAGAGTCATT GAA GATGACTCTTCGTA TTCGTTTTGCAACGC TERM 409 458189 - 458152 - R 77 -12.8 -2.78463 | opp_overlap 458157, overlap 458157 ATCCTTGGTATTATA CGAAAGCCCGACGATG TGTTGG CATCTTCGGGCTTTTG TATGCGGAGAAATTT TERM 410 458157 - 458184 + r 100 -12 -4.52589 | opp_overlap 458152 458157 TGGTATTATACGAAA GCCCGACGATGT GTTG GCATCTTCGGGC TTTTGTATGCGGAGA TERM 411 458184 - 458157 - R 90 -11.3 -3.86202 | opp_overlap 458157, overlap 458152 TGGTATTATACGAAA GCCCGACGATG TGTTGG CATCTTCGGGC TTTTGTATGCGGAGA Avi_5460 459175 - 458285 - | hypothetical protein TERM 412 459048 - 459032 - G 90 -4.4 -5.34857 | overlap 459034 CGAAAGAAAATAAAA TCCCTC AAATG GAGGAA TGGCGCCCGCGTAAA TERM 413 459316 - 459292 - R 73 -9.3 -3.58536 | opp_overlap 459292, overlap 459281 AAACGTATTTTTAAA TACCGCGCATC GTT GATGTGCAGTA TTGATGCCGTTATTG treZ 461528 - 459765 - | malto-oligosyltrehalose trehalohydrolase TERM 414 460233 - 460215 - G 76 -3.1 -4.89393 | opp_overlap 460222, overlap 460216 460221 GAAATCGCAGAAAAA CGGAAAG GGGGT CTTTGCG CCCCATTCCTCTCCC treY 461742 - 464273 + | malto-oligosyltrehalose synthase Avi_5463 464389 - 464820 + | osmotically inducible protein OsmC TERM 415 464843 - 464872 + F 100 -11.4 -4.76171 | CCCTGGGTAGTCTGG GTCCGGTCTGGC TTGAAT GCTAGGCCGGGC TTTTGTGCTTTTTTC TERM 416 465881 - 465843 - g 70 -2.2 -4.74706 | GCCAAGATCGAAAAA CTCGCCGCCCTGCATGGC CGT GGCATCCTGACCGACAAG GAATATCAAGACAAA Avi_5465 464859 - 465923 + | hypothetical protein Avi_5466 466285 - 467784 + | hypothetical protein Avi_5467 468664 - 467837 - | ABC transporter nucleotide binding/ATPase protein (aliphatic sulfonate) Avi_5468 469524 - 468670 - | ABC transporter membrane spanning protein (aliphatic sulphonate) TERM 417 469060 - 469048 - G 79 -6.9 -4.61633 | overlap 469051 ATAGATCGGGAAAAA CACGC CAA GCGCG ACAAGAAAGAGCTTG Avi_5469 470533 - 469565 - | ABC transporter substrate binding protein (aliphatic sulfonate) ssuA 470916 - 471881 + | ABC transporter substrate binding protein (aliphatic sulfonate) TERM 418 472838 - 472852 + G 73 -12.8 -2.84098 | overlap 472835 GGCTGGTGCGGGCAG GGGCCG GTA CGGCCC TCGTTGGTTCGCCGG ssuD 471907 - 473097 + | sulfonate monooxygenase TERM 419 473120 - 473157 + F 100 -9 -5.2189 | opp_overlap 473141, overlap 473121 473127 TAATTGTCGCTCATG CGCCATGCCGCTCCGG ATTAAG CCGGGGCGGTGTTGCC TTTTTTGATGCTTCC TERM 420 473121 - 473156 + F 91 -12.5 -3.72049 | opp_overlap 473141, overlap 473120 473127 AATTGTCGCTCATGC GCCATGCCGCTCCGG ATTAAG CCGGGGCGGTGTTGC CTTTTTTGATGCTTC TERM 421 473127 - 473150 + F 89 -13.1 -3.3244 | opp_overlap 473141, overlap 473121 473120 CGCTCATGCGCCATG CCGCTCCGG ATTAAG CCGGGGCGG TGTTGCCTTTTTTGA Avi_5475 473367 - 473834 + | hypothetical protein TERM 422 473967 - 473933 - T 100 -20.9 -4.2074 | opp_overlap 473933 CGTCGAATACAGAAA TCAGCCTGCCGGATC TGAAT AATCCGGCAGGCTGA TTTTTTGCTGTGGCC TERM 423 473933 - 473967 + T 100 -20.2 -5.21709 | opp_overlap 473933 CGTCGAATACAGAAA TCAGCCTGCCGGAT CTGAATA ATCCGGCAGGCTGA TTTTTTGCTGTGGCC Avi_5477 474537 - 473989 - | hypothetical protein TERM 424 474727 - 474769 + r 72 -8.4 -3.80094 | opp_overlap 474727 474726 TAATGTGCTATAAAC GGGAGAGCCTATCAGATTTG GAC TGAACCAGATGGGCTCTCAC TTCTCTTGGTTTCAG Avi_5479 476074 - 474902 - | FMNH2-dependent monooxygenase protein TERM 425 475212 - 475227 + g 87 -8.2 -4.7497 | overlap 475205 475213 AATCGCAGGGCGGCA TCGGCG ATGG CGCCGG TTTTTGATGGGTCAA TERM 426 476291 - 476276 - R 70 -6.2 -4.1552 | opp_overlap 476275 CAGGTGGGCAATAAA CGATAT TATC ATATCG ATAGATTTTGTATAG Avi_5481 477259 - 476348 - | transcriptional regulator LysR family TERM 427 477346 - 477325 - H 70 -3.7 -4.71828 | gap 1 AGTGTAGTAAGAAAA CGCCAGCTTG TTC CAAT-TGGCG AATAACAATAGATTT TERM 428 478032 - 478048 + G 95 -13.7 -4.19735 | CTCTGTTCGCGCCTT GCAGGCG TCG CGCCTGC TTTGGTTTTGAGCGC Avi_5482 477468 - 478265 + | lipase esterase mexE 478324 - 479514 + | HlyD family secretion protein TERM 429 479608 - 479578 - f 95 -15.5 -3.04144 | gap 1, opp_overlap 479577, overlap 479594 TCGTCAGGTCCAATA TCCT-CCCGGCAGC AAAG GCCGCCGGGCAGGA CTGTCATATCCATAT TERM 430 480998 - 480969 - g 77 -7.7 -4.28254 | GCGCAATATCGAAAA CGGCCTGTCGCCC CGTC AGGCGACCTACCG TGCCATGAAGGAAGT mexF 479695 - 482895 + | AcrB/AcrD/AcrF family protein TERM 431 482899 - 482943 + T 100 -15.7 -4.3821 | opp_overlap 482902, overlap 482901 482902 GCGGCCGAGTAAGGC AAACGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCGCTG TTTATGTTCTATTTT TERM 432 482901 - 482941 + T 100 -18.3 -3.75997 | opp_overlap 482902, overlap 482899 482902 GGCCGAGTAAGGCAA ACGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCGC TGTTTATGTTCTATT TERM 433 482902 - 482940 + T 100 -21.8 -2.83971 | opp_overlap 482902, overlap 482901 482899 GCCGAGTAAGGCAAA CGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCG CTGTTTATGTTCTAT TERM 434 482940 - 482902 - T 100 -17.4 -3.78329 | opp_overlap 482902 482901 482899 GCCGAGTAAGGCAAA CGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCG CTGTTTATGTTCTAT Avi_5485 483934 - 482978 - | transcriptional regulator LysR family TERM 435 484309 - 484258 - g 78 -8.6 -4.23213 | gap 1 GCGAGATCGAAGAAA TGTGCGCCCCGTTGCAGGAGGCGGC CAA GGCGCCTGATGCAGCCGGG-ACACA AGCGTTCCGCGAGAC TERM 436 484977 - 484967 - g 70 -2.4 -4.84359 | CGATGTTCAGAAAAA GCGC CTT GCCC GTGAGGGCAATCTCC Avi_5486 484167 - 485339 + | hypothetical protein Avi_5487 485336 - 486016 + | hypothetical protein Avi_5488 486049 - 486996 + | Glyoxalase/bleomycin resistance Avi_5489 487014 - 487373 + | ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase Avi_5490 487377 - 488507 + | monooxygenase FAD-binding TERM 437 488590 - 488614 + F 75 -7.2 -4.3739 | gap 1 AAAATATTTTCGACG GCGTTCCGATT GGGA GATCGGA-CGC TTTTGTCGGCGCATG TERM 438 488874 - 488910 + G 86 -2.8 -5.53991 | gap 1, overlap 488906 AGATGAACCAAAGGC GCTG-GGCCTCGACGGC TTTT GCCGTTGCCGCTGCCGC TTTTTTTGGTGCATC TERM 439 489243 - 489229 - g 75 -4.2 -4.84359 | TGAGCCGGAGAAAAA GCCC TTTAGCC GGGC AATGTGGTTCACGAT TERM 440 489394 - 489411 + G 86 -6.2 -5.00616 | overlap 489407 CGTCAACTTCATATT GCCGTC TCCACT GGCGGC TTTTTTGCAGACCCG Avi_5491 488651 - 489769 + | permease (MFS superfamily) TERM 441 490001 - 490028 + G 76 -3.4 -5.00616 | GCACGCGCATCCGTT TCGTCGATATTC CGCC GGATACCGAGGA TTTTTTGAAAACCGG Avi_5492 489766 - 490347 + | transcriptional regulator protein Avi_5493 490387 - 491364 + | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) TERM 442 491676 - 491699 + G 78 -11 -3.68827 | gap 1 CAAGGCGTCGCACTT CGCCAGCC-CG GCG CGAGGCTGGTG TTTGCCTCCTCCATC Avi_5494 491364 - 492284 + | Nucleoside-diphosphate-sugar epimerase Avi_5495 492281 - 493057 + | cyclase Avi_5496 494623 - 493283 - | ABC transporter nucleotide binding/ATPase protein Avi_5498 496345 - 494675 - | ABC-type anion transport system, duplicated permease component TERM 443 496063 - 496047 - G 77 -2.2 -5.14965 | overlap 496048 AGGTTGAGGAAAAAA GTGACG GTAAA CGTCAG AAAGCCGAGAATCGG TERM 444 496079 - 496067 - G 75 -9.1 -3.95219 | GGTAAACGTCAGAAA GCCGA GAA TCGGC ACCGATTGGAGGATA Avi_5501 496749 - 497819 + | two component sensor kinase TERM 445 498363 - 498327 - g 73 -10.9 -3.41738 | overlap 498325 GTCTCAACAAACAGA TTGCCGGCGATCTCGGT GTC AGCGAAATCACCGTCAA GGTTCGCCGCGCCCA nwsB 497816 - 498454 + | two component response regulator TERM 446 498488 - 498462 - T 75 -11.5 -2.8655 | opp_overlap 498460 CGGATTGAGAGGATA GCGCCGCGCCC TAGAC AAGCGCGGCAC CATTATCGGTCGTCA Avi_5503 499414 - 498509 - | hypothetical protein ugpC 500556 - 499411 - | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) TERM 447 499554 - 499525 - G 72 -8.5 -3.90744 | CTCGGCGTCAAAGAA GTGCAATTGCTGC TGCG GCAGCAACAGCCC GATCGTGTCACCGGC ugpE 501484 - 500597 - | ABC transporter membrane spanning protein (sn-Glycerol-3-phosphate) TERM 448 501197 - 501167 - G 70 -2.5 -4.83615 | overlap 501152 501169 CACGCCCCAGAAAAA CACGTGTTTCAGC GGCGT GCGGAAAAACACG ATGGCAAAGGCGGTC ugpA 502382 - 501492 - | ABC transporter membrane spanning protein (sn-Glycerol-3-phosphate) TERM 449 502083 - 502071 - G 82 -10.5 -4.10717 | opp_overlap 502069 GAAAAACCGAAAGAA GCCGG TTC CCGGC AGTTGCCTATCGACC TERM 450 502440 - 502408 - R 80 -11.9 -3.34522 | overlap 502411 502415 ATATGCTGGAATGAA GGAGGAAGCCTGCCG ATG CGGCAGGCTTCCGGG AGCAATGAGAGCTGA TERM 451 502437 - 502411 - R 100 -22.4 -2.84098 | overlap 502408 502415 TGCTGGAATGAAGGA GGAAGCCTGCCG ATG CGGCAGGCTTCC GGGAGCAATGAGAGC TERM 452 502433 - 502415 - R 100 -16 -3.30554 | overlap 502411 502408 GGAATGAAGGAGGAA GCCTGCCG ATG CGGCAGGC TTCCGGGAGCAATGA ugpB 503802 - 502459 - | ABC transporter substrate binding protein (glycerol 3-phosphate) TERM 453 503842 - 503858 + r 72 -7.9 -3.86194 | ACAATTCCGCTTTAC CCCCGGA AAT TCAGGGG TTTCTAGCGGGCATT Avi_5508 504830 - 503988 - | ABC transporter membrane spanning protein Avi_5510 505712 - 504834 - | ABC transporter, permease protein ugpC 506806 - 505709 - | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) TERM 454 506967 - 506925 - R 82 -11.8 -3.53012 | opp_overlap 506926 506928, overlap 506926 GCTCTGCGGGGCAAA GGCTCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGATCT TTTCGTCCCAGATGC TERM 455 506966 - 506926 - R 95 -15.3 -2.71712 | opp_overlap 506926 506928, overlap 506925 CTCTGCGGGGCAAAG GCTCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGATC TTTTCGTCCCAGATG TERM 456 506926 - 506966 + r 100 -17.5 -4.2558 | opp_overlap 506925 506926, overlap 506928 CTCTGCGGGGCAAAG GCTCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGATC TTTTCGTCCCAGATG TERM 457 506928 - 506964 + r 100 -18.7 -3.73042 | opp_overlap 506926 506925, overlap 506926 CTGCGGGGCAAAGGC TCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGA TCTTTTCGTCCCAGA Avi_5512 508126 - 506945 - | ABC transporter, periplasmic substrate-binding protein TERM 458 508286 - 508312 + r 87 -13.8 -3.03124 | opp_overlap 508283 508284 GGAGCCCCATAAGCC CGAAGAGCCATT GCT AATGGCTCCTCG TCTTAGGCGATGCGG Avi_5513 510060 - 508315 - | hypothetical protein Avi_5514 511075 - 510077 - | transcriptional regulator ROK family TERM 459 510160 - 510174 + g 72 -5.6 -4.41348 | overlap 510169 CAATCATCCCCGCCT GCACGC CGA GCCTGC TTTGTTTCAGCGGGC TERM 460 510943 - 510963 + g 70 -2.5 -4.82901 | TGATCTGCTCCTGGG TTCGGGC AATGCCG GCCAGAA TTTTTGTGCCGCCAA Avi_5515 511602 - 513503 + | ABC transporter substrate binding protein (oligopeptide) TERM 461 513504 - 513546 + F 77 -11.3 -3.17075 | gap 1, opp_overlap 513504 513501 TTCTTCAAGAAGTGA TCG-GTGCCGGTGGTCTGCT GAAC GGCAGGCCACCGGCAAGCAA TTGGATTACCAGAGA Avi_5516 513627 - 514613 + | ABC transporter membrane spanning protein (oligopeptide) TERM 462 515658 - 515639 - g 82 -10 -4.14472 | overlap 515630 GCAAGAGGCTCAAAA CCTGCGAA CAAT CTCGCAGG CGCCTTGGTTGCTGG Avi_5517 514623 - 515762 + | ABC transporter membrane spanning protein (oligopeptide) Avi_5518 515759 - 516805 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 463 517555 - 517541 - g 71 -10 -3.53444 | GCAGGCTGGTGGAAA TTGCCG ATA CGGCAA GCCTGTTCGACAAGC Avi_5520 516802 - 517833 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 464 518071 - 518057 - g 81 -11.4 -3.86194 | AAGGCCTTTGAGAAA CACGCC TAT GGCGTG GACCTGATGCGGGAT phoP 517991 - 518647 + | two component response regulator TERM 465 518847 - 518865 + G 77 -11.8 -3.57144 | opp_overlap 518830 CGGACAAGCCGATTG TCCAGATC CCC GATCTGGA TTTCAACATGGACGA Avi_5522 518651 - 520033 + | Signal transduction histidine kinase TERM 466 520069 - 520081 + F 70 -3.5 -4.65895 | opp_overlap 520069 GATGCAAATAAATGA TTATA AAG TATAA TTTTTAAGTCAACGA Avi_5523 520212 - 520916 + | phosphoserine phosphatase Avi_5524 520930 - 522342 + | 4 animobutyrate aminotransferase TERM 467 522545 - 522518 - g 76 -12.6 -3.13432 | opp_overlap 522517 522526 CGCAAGATCAGCCAA GCGGGACGGCAG GGGT CTGCCGAGCCGC GCCTCTGCTTCATGG Avi_5525 522401 - 523300 + | hypothetical protein Avi_5526 523297 - 523650 + | Permeases of the drug/metabolite transporter (DMT) superfamily Avi_5527 523647 - 524528 + | hypothetical protein TERM 468 525292 - 525303 + G 74 -2.2 -5.02074 | TCGGCACGTCGCCGA TCTG ACAG CGGA TTTTTTCGAGGCTCA Avi_5529 524525 - 525340 + | carboxylesterase Avi_5530 525402 - 526550 + | hypothetical protein Avi_5531 526547 - 526915 + | Permeases of the drug/metabolite transporter (DMT) superfamily Avi_5533 527754 - 526924 - | hypothetical protein celB 530242 - 527966 - | celB protein TERM 469 528602 - 528592 - G 71 -6.8 -4.25104 | CGGCTCCGATGAAAA TCGC ATT GCGA CCGGAAAAGCGTGGG celA 532506 - 530317 - | cellulose synthase TERM 470 531480 - 531468 - G 76 -3.3 -4.89852 | opp_overlap 531479, overlap 531469 GCATATCGACAAAAA TGCTG TTC CAGCC GCGCGAATGCAGTTC TERM 471 531618 - 531595 - G 70 -2.3 -4.84359 | CGATCCGCAGAAAAA GGCCGCG TTCCATTTGT CGAGGCC GCGCTGGATAATGCC TERM 472 532211 - 532200 - G 70 -2.2 -4.84761 | ACAGGCTGAGAAAAA GCAT CAGA ACGC TGTACATCTCGGCCA Avi_5536 533687 - 532608 - | cellulose biosynthesis protein TERM 473 535974 - 535984 + G 71 -6.8 -4.25283 | overlap 535967 CCTGATGCCGGAACC GCAG GAT CTGC TTTTGCTGCGGGGCT celG 533851 - 536133 + | cellulose synthesis protein TERM 474 536263 - 536211 - T 72 -7.7 -3.92659 | opp_overlap 536211 536220 536260, overlap 536216 536220 CGCTGAAAAGGCAAA CGAAAGCAAGAGCCTCTCGGGTTCA ATC TGAACCTGACAAACTCTAGTCTCCG GTTTCCTGGATTGTG Avi_5539 538287 - 536254 - | signal transduction histidine kinase TERM 475 536727 - 536746 + g 71 -7.8 -4.08216 | CATGCAGACGGGCCA GGAAGGCG TTGA CGGCTTCC TTTTCCGAGACGTCC TERM 476 537019 - 537034 + g 72 -4.6 -4.57353 | opp_overlap 537012 CGACGAAACCCCGAT GGAGGC ATAG GCATCC TTTTCTGTGGTCGGC TERM 477 537388 - 537399 + g 78 -3.6 -4.93365 | overlap 537385 CACGCCGACCATGCG GGTG ATCT CGCC TTTTTCGTTGTGAAC Avi_5540 538528 - 539763 + | sensory box histidine kinase TERM 478 540022 - 540040 + G 81 -12.4 -3.76402 | TCGTCACGGGCAATC TTCGGCGG ATA CCGCCGGA TTTCGTCGGTGCGGT Avi_5541 539787 - 540191 + | response regulator Avi_5544 541728 - 540688 - | hypothetical protein TERM 479 541033 - 541049 + g 77 -7.9 -4.36914 | overlap 541035 TCCCTTGGCATCGTG CTCGCGG ATG CCGCCAG TTTTCTGGGGCAGGC TERM 480 541856 - 541837 - H 100 -2.8 -5.63374 | GGAAGAGCAAAAAAA TGCCTGAA AATT CTAAGGCA AAAATTCCCCGAAAC TERM 481 542213 - 542255 + G 72 -9 -3.93695 | GGCAATTGCGGCGAT CTGATCCGGGGGCGGGATTG GCG CAATTCCAGCCTCGGGGCGG TTTGTCAATGGTCGG TERM 482 543049 - 543071 + G 75 -12 -3.21593 | opp_overlap 543035, overlap 543046 TCGCCGGTTTCGCAC CGCCATGGAC GCT GTCCATGGGG TATTGTGGACCAATG TERM 483 544500 - 544488 - g 72 -4.7 -4.62069 | CGGGTACCCTAAAAA GCCCG GAA CTGGC CCGCAAGGCCCGCGA cvgS 541988 - 545098 + | two component sensor kinase/response regulator hybrid galE 545185 - 546078 + | UDP-glucose 4-epimerase TERM 484 546272 - 546236 - T 100 -15.2 -3.73386 | gap 1, overlap 546238 AGACAATCAGCCAAA GACATC-CGCCGCCGGT TTGG ACCGGCGGCGTGACGTT CGCGTCAGGCGAAGC TERM 485 546270 - 546238 - T 100 -17.8 -3.44255 | gap 1, overlap 546236 ACAATCAGCCAAAGA CATC-CGCCGCCGGT TTGG ACCGGCGGCGTGACG TTCGCGTCAGGCGAA Avi_5548 547398 - 546277 - | oxidoreductase TERM 486 546807 - 546847 + g 85 -10.4 -4.3208 | gap 1, opp_overlap 546808 546837, overlap 546808 CCGCATCGGCAGGAT AGGTCGCACCGTTTGCTGC GCGA GCACCA-ACGGCGCGACCG TTTTCAATTATCACG TERM 487 546808 - 546846 + g 82 -13.9 -3.18766 | gap 1, opp_overlap 546808 546837, overlap 546807 CGCATCGGCAGGATA GGTCGCACCGTTTGCTGC GCGA GCACCA-ACGGCGCGACC GTTTTCAATTATCAC TERM 488 546846 - 546808 - G 86 -16.1 -2.79183 | gap 1, opp_overlap 546808 546807, overlap 546837 CGCATCGGCAGGATA GGTCGCACCGTTTGCTGC GCGA GCACCA-ACGGCGCGACC GTTTTCAATTATCAC Avi_5549 548443 - 547439 - | NAD binding oxidoreductase Avi_5550 549993 - 548470 - | glutamine ABC transporter TERM 489 549975 - 549965 - G 74 -6.8 -4.4009 | opp_overlap 549965 549943 TCCCAGTCGAGAAAA CTGC GAC GCAG TGTTTCAAGCCATTC glnH 550825 - 550073 - | ABC transporter substrate binding protein (glutamine) TERM 490 551077 - 551043 - H 95 -15.8 -3.08679 | opp_overlap 551022 551044, overlap 551046 551065 TCTTGTTATTGAATA TGAGACCGGTCTCTAT CTT AAAGAGACCGGTCTCT TTTGGTTTGACAATT TERM 491 551044 - 551076 + H 100 -19.3 -4.55128 | opp_overlap 551043 551046 551065, overlap 551022 CTTGTTATTGAATAT GAGACCGGTCTCTAT CTT AAAGAGACCGGTCTC TTTTGGTTTGACAAT TERM 492 551074 - 551046 - H 100 -16.1 -2.75992 | opp_overlap 551022 551044, overlap 551043 551065 TGTTATTGAATATGA GACCGGTCTCTAT CTT AAAGAGACCGGTC TCTTTTGGTTTGACA TERM 493 552144 - 552132 - g 74 -2.6 -5.011 | ATGGAAAGAATAAAA GGCG CAAAC CACC CAGCTCGGCATGTCA Avi_5553 551142 - 552212 + | transcriptional regulator LacI family TERM 494 552198 - 552212 + F 100 -8.6 -5.4387 | overlap 552195 CGCAGCTCCATTGCA TCAAGG CTG CCTTGA TTTTTTGATTTATAT mcpA 552490 - 554451 + | methyl-accepting chemotaxis protein cheW 554451 - 554924 + | chemotaxis protein TERM 495 554946 - 554978 + F 100 -20.7 -3.05522 | opp_overlap 554952, overlap 554946 554970 GAAATTTGTAGCAGG CCCAAAGCCCGGAAG TCT CTTCCGGGCTTTGGC GTTTTCAACCCATTG TERM 496 554946 - 554979 + F 100 -20.5 -4.09739 | gap 1, opp_overlap 554952, overlap 554946 554970 GAAATTTGTAGCAGG C-CCAAAGCCCGGAAG TCT CTTCCGGGCTTTGGCG TTTTCAACCCATTGC TERM 497 554972 - 554952 - f 100 -16.9 -3.58343 | opp_overlap 554946 554946 554970 TGTAGCAGGCCCAAA GCCCGGAAG TCT CTTCCGGGC TTTGGCGTTTTCAAC TERM 498 555227 - 555213 - g 75 -4.2 -4.731 | opp_overlap 555226, overlap 555214 555223 AACCTATGAAGAAAA TGACGA AGA TCGTCC TGGTCGGCCTGGTGC TERM 499 555523 - 555509 - g 71 -7.1 -4.18934 | CAGGACCTGAAGAAA GGCGA GTTGA TCGCC ACGCTGGATGACGCA Avi_5556 555203 - 556585 + | HlyD family secretion protein Avi_5557 556582 - 559680 + | AcrB/AcrD/AcrF family protein TERM 500 560846 - 560867 + G 71 -11.5 -3.22298 | CAATCTGTCGTTGAT GGCGCTGGC AGTG GCCAGCGGC TTCGTGGTGGATGAC TERM 501 560954 - 560925 - g 75 -4.2 -4.74706 | gap 1, overlap 560926 560933 560934 GCCAATATCGAAAAA GGCATGAAGCCGC TTGAG GCGGC-CCACGCG GGCGCCCGGCAGATC TERM 502 561466 - 561487 + G 80 -5 -5.00616 | opp_overlap 561466, overlap 561455 561467 CGGCGGTGCAGAGCA TCGGCGCC TCTGTT GGCGGCGG TTTTTTGGGAACAGC Avi_5558 559677 - 562784 + | AcrB/AcrD/AcrF family protein TERM 503 562971 - 562955 - g 71 -7.9 -4.0896 | overlap 562956 AAAGCCTCGGTAAAA CTGGCGG ATA CCGCCAC CCATGGTCGCCGTGC Avi_5559 562925 - 563683 + | transcriptional regulator GntR family gcvT 563807 - 565225 + | glycine cleavage system T protein aminomethyltransferase Avi_5561 567760 - 565487 - | P type cation (metal) transporter ATPase component TERM 504 567669 - 567693 + g 78 -6.3 -4.56597 | opp_overlap 567666, overlap 567670 567673 ACATCGGTAATACCG GCCACACGGCG CGC TGCCGTGTCGA TTTTTGCCGCGCAGG Avi_5562 567832 - 568251 + | transcriptional regulator TERM 505 568257 - 568300 + T 100 -10.5 -5.38958 | gap 1, opp_overlap 568262 568265, overlap 568260 568287 CCGGCACTGATGTCA CT-AGAGTATCGGGCCGA AAATAGGAA TCGGTCCGATGCTCTCAG TTTTTGTTTGTGCAT TERM 506 568260 - 568296 + T 78 -12.4 -2.96898 | opp_overlap 568262 568265, overlap 568257 568287 GCACTGATGTCACTA GAGTATCGGGCCGA AAATAGGAA TCGGTCCGATGCTC TCAGTTTTTGTTTGT glgB 570566 - 568359 - | 1,4-alpha-glucan branching enzyme aglA 573865 - 570563 - | alpha-glucosidase TERM 507 572945 - 572932 - G 72 -6.7 -4.2558 | opp_overlap 572932 GATTGCGCAGGAAAA TTGCC CATT GGCAA TTATCGGGGATCTCA Avi_5565 577125 - 573877 - | alpha-amylase-related protein TERM 508 575539 - 575523 - G 74 -2.2 -4.93365 | overlap 575524 575531 575534 GCTCATAATGAAAAA TCGCAA ACGGA TTGCGC CAAGCCTCGACGACA TERM 509 575802 - 575825 + g 77 -12.4 -3.57144 | gap 1 TCGCCAGACGCGGTG CGGCGGC-GGC CTC GCCTGCCGTCG TTTCAGGCTCGAACA TERM 510 576150 - 576132 - G 79 -5.9 -4.82901 | opp_overlap 576135, overlap 576135 GTTTTCCGAGAAAAA CATGCCG TTGTC CGGCTTG ATCATTGAGGGCGCG TERM 511 576569 - 576553 - G 72 -9.3 -3.65046 | CGTCCAGGCGAAGAA CCGGGCC GAC GGACCGG CGGCGATCAGGTCTC TERM 512 578400 - 578412 + G 78 -6.2 -4.64676 | overlap 578386 578345 GGCCGCCTTGCAGCC GGCG TTGAT CGCC TTTTCTTGCCGCTCG Avi_5566 577396 - 579210 + | 4-alpha-glucanotransferase cspA 579676 - 579888 + | cold shock protein TERM 513 579927 - 579948 + T 100 -13.7 -4.42851 | overlap 579935 GCGGATGATTTTGAA CGGCGTTCC GCAA GGAGCGCCG TTTTGCGTTTATTGC TERM 514 580021 - 580003 - T 95 -9.6 -5.00616 | GGCGTGTGCAAAAAA CCTGAAGC AAG ACTTCAGG CGGCCCGCACAGGCC Avi_5568 581042 - 580017 - | hypothetical protein Avi_5569 582072 - 581026 - | hypothetical protein TERM 515 581727 - 581698 - G 70 -4.2 -4.62069 | overlap 581707 GCCGCATTCGAAAAA CTGGAAATAGGG TTTCAC CCCCAGATCCAG CTCTCTGTGCGGCAA thuB 583302 - 582202 - | trehalose utilization-related protein TERM 516 583268 - 583237 - G 95 -17.4 -3.53811 | gap 1, overlap 583238 GCTATTGGTGGCAAA CTCGATGGCATGGCG GTT CGCCATGCCACCG-G TACCGAGAATGAGAA TERM 517 583268 - 583238 - G 89 -17.6 -2.72144 | overlap 583237 CTATTGGTGGCAAAC TCGATGGCATGGCG GTT CGCCATGCCACCGG TACCGAGAATGAGAA thuA 584084 - 583299 - | trehalose utilization-related protein TERM 518 584145 - 584124 - H 72 -4.3 -4.68593 | opp_overlap 584134, overlap 584125 584126 TCCATCAGTGAAAAA TCCGCAGCC TGAT GGCTGCAAG CCCCCTTGGTGCCGC TERM 519 584772 - 584807 + G 78 -11.2 -3.7108 | gap 1, overlap 584765 584773 GGAGGCAGTCGAGAG GCGCGATGTGCTGGCGA TGA TCGCCAGCA-ATCGGGA TTTCCATGTCGCCAT TERM 520 584773 - 584806 + G 80 -14.7 -2.82327 | gap 1, overlap 584765 584772 GAGGCAGTCGAGAGG CGCGATGTGCTGGCGA TGA TCGCCAGCA-ATCGGG ATTTCCATGTCGCCA Avi_5575 584380 - 585093 + | transcriptional regulator GntR family TERM 521 585786 - 585770 - g 78 -8.7 -4.14739 | CTATGCAGCCGAAAA CATCACC TCC GGCGATG ACGGCCTGATCCTGA dapA 585237 - 586178 + | dihydrodipicolinate synthase TERM 522 586165 - 586185 + T 75 -11.9 -2.85366 | opp_overlap 586168, overlap 586169 ACGAAGCCCGCTATC CAAGCCCTC GTT GAGGGTTTG CTTTAGAATTTTACG TERM 523 586169 - 586181 + T 81 -9.1 -4.08919 | opp_overlap 586168, overlap 586165 AGCCCGCTATCCAAG CCCTC GTT GAGGG TTTGCTTTAGAATTT Avi_5578 589271 - 586203 - | alpha-mannosidase TERM 524 586236 - 586259 + g 100 -9.6 -4.91873 | CGTCAGAATTTCGAA GGGCTGGA AGGCAAGA TCCAGCCC TTTTTCGTTAATGTC TERM 525 588558 - 588579 + g 83 -9.4 -4.26076 | opp_overlap 588537 ATCGATATGGGTGTG GCCGGTTG CCATCA CGACCGGC TTTTCCTCAAAATCA Avi_5579 590602 - 589337 - | hypothetical protein TERM 526 589465 - 589486 + g 86 -14.5 -3.29096 | opp_overlap 589451, overlap 589479 ACATGGCCCCAGCCC TTGCGCCAG CGCG CTGGCGCAA TTCGTCATTCATGCC TERM 527 591497 - 591474 - g 72 -4.6 -4.64766 | gap 1, overlap 591487 CCTATATGGGAAAAA CGCTGAAAATC GAC GATTT-CGGCG CCGCTAATATCGATG togB 591125 - 592408 + | ABC transporter/Periplasmic pectin oligomer binding protein TERM 528 592460 - 592435 - g 85 -15.5 -3.05816 | gap 1, opp_overlap 592437, overlap 592420 CCACTCGCGATGGAA TGGC-CGGCACC TCT GGTGCCGCGCCA GTGATGCAGCCTATC TERM 529 592497 - 592527 + G 74 -11 -3.57674 | overlap 592495 592499 592501 CCGTCGCCGTTCAGG GCCAGTCTGGCGCG CAA CGCGCCGGGCTATC TATTTCTCCTGCCCT TERM 530 592499 - 592525 + G 76 -12.2 -3.36228 | overlap 592497 592495 592501 GTCGCCGTTCAGGGC CAGTCTGGCGCG CAA CGCGCCGGGCTA TCTATTTCTCCTGCC TERM 531 592501 - 592523 + G 86 -14.8 -3.24406 | overlap 592499 592497 592495 CGCCGTTCAGGGCCA GTCTGGCGCG CAA CGCGCCGGGC TATCTATTTCTCCTG TERM 532 592794 - 592809 + G 78 -8.2 -4.42653 | GGCATTCGCGGCCTA CCGCTC TACC GGGCGG TTTTCTACCTGCCAT togM 592434 - 593378 + | ABC transporter membrane spanning protein (galacturonic acid) TERM 533 593433 - 593422 - g 84 -7.2 -4.72986 | opp_overlap 593415 CATGCGCAGGAAAAA CGGC GCTG GCCG GTGTCCCTTATCCTG togN 593371 - 594252 + | ABC transporter membrane spanning protein (galacturonic acid) Avi_5583 594281 - 595309 + | oxidoreductase Avi_5584 595302 - 596372 + | oxidoreductase TERM 534 596675 - 596659 - g 73 -3.5 -4.83615 | GACTGTTTATAAAAA CCTGGCC TTC GGTCTGG AAACGGCTGGCATGA togA 596372 - 597466 + | ABC transporter galacturonide binding/ATPase protein Avi_5586 597555 - 598229 + | hypothetical protein TERM 535 598440 - 598467 + T 100 -12 -4.57569 | opp_overlap 598440 TGAAGAAACAAAAAA GCCTGCCGCG GGAGGAGG TGCGGCAGGC TTTTTAAAAGAGTGA TERM 536 598467 - 598440 - T 100 -11.3 -5.80003 | opp_overlap 598440 TGAAGAAACAAAAAA GCCTGCCGC GGGAGGAGGT GCGGCAGGC TTTTTAAAAGAGTGA TERM 537 598751 - 598731 - T 100 -11.1 -4.70659 | opp_overlap 598731 TCCCAGACGCAAAAA CGCCCGC GTCATCG GCGGGCG TCGTTCAAGCAGCAA TERM 538 598731 - 598751 + T 70 -11.1 -2.70932 | opp_overlap 598731 TCCCAGACGCAAAAA CGCCCGC GTCATCG GCGGGCG TCGTTCAAGCAGCAA Avi_5587 598925 - 598779 - | hypothetical protein Avi_5588 599271 - 600128 + | dehydrogenase TERM 539 600227 - 600187 - f 71 -2.6 -4.89562 | gap 2, opp_overlap 600189 600193, overlap 600182 600178 600188 600189 GCAAAACCAAGAAAA GTTTTCGTCGGTCAGGTTCA GAT TGAACCTGACCGACTGT--C GTTTTGCGGTAGTGG TERM 540 600189 - 600228 + F 91 -10.8 -4.15565 | gap 1, opp_overlap 600182 600178 600187 600188 600189, overlap 600193 AAAACCAAGAAAAGT TTTC-GTCGGTCAGGTTCA GAT TGAACCTGACCGACTGTCG TTTTGCGGTAGTGGC TERM 541 600193 - 600223 + F 100 -22.8 -3.10537 | opp_overlap 600178 600187 600189 600188, overlap 600189 CCAAGAAAAGTTTTC GTCGGTCAGGTTCA GAT TGAACCTGACCGAC TGTCGTTTTGCGGTA Avi_5589 600415 - 602313 + | sensor histidine kinase TERM 542 602673 - 602645 - g 89 -6 -5.1101 | gap 1, overlap 602646 CCACCACGCAAAAAA GCTGCGATTGCCA GTAC CGGC-ATCGCAGG ACTGGACGAAATTCT TERM 543 602672 - 602646 - g 72 -9.5 -3.65883 | gap 1, overlap 602645 CACCACGCAAAAAAG CTGCGATTGCCA GTAC CGGC-ATCGCAG GACTGGACGAAATTC TERM 544 603515 - 603538 + G 82 -10.2 -4.1891 | overlap 603524 GCAACGGCAGCCCTC GAGCGCGGCG AAAG CGTCGCTCTC TTTCTGTTCGAGGAG Avi_5592 602627 - 604069 + | hypothetical protein TERM 545 604404 - 604417 + G 79 -5.2 -4.77165 | overlap 604406 ATTGCTTTCCGCCTG GCCG GGAGCG CGGC TTTTGTTCTACACAC TERM 546 604860 - 604883 + G 71 -10.2 -3.48598 | overlap 604858 TGCGATCAAATATGG CGCCCTGTCG GTCC CGGAAGGGCG TGTTTCCCTTCGTTG exsG 604066 - 605124 + | two component sensor kinase Avi_5594 605900 - 605184 - | hypothetical protein Avi_5595 607051 - 606008 - | zinc-binding oxidoreductase TERM 547 607008 - 607018 + g 72 -4.6 -4.7173 | GCTGCCTTCATCTCA TCGG TAT CCGG TTTTTCGCTATACTG TERM 548 607097 - 607113 + H 77 -12.3 -2.71791 | opp_overlap 607111, overlap 607096 GCCACATTCACCGAT GCCTTGG GCA CCAAGGC CTTTGGCGCGCCCGT Avi_5596 607468 - 607968 + | hypothetical protein TERM 549 607981 - 608000 + F 95 -12.2 -4.16842 | opp_overlap 607981 TGATCTCTGGACGAA CCTTTCGC TGTT GCGAAAGG TTTCTTCCCCCTGAA TERM 550 608000 - 607981 - f 81 -12.2 -3.14564 | opp_overlap 607981 TGATCTCTGGACGAA CCTTTCGC TGTT GCGAAAGG TTTCTTCCCCCTGAA TERM 551 608017 - 608034 + F 100 -9.8 -5.49569 | opp_overlap 608017 TTCTTCCCCCTGAAA GGCCGC CAATGT GCGGCC TTTTTTGTGTTCATG TERM 552 608034 - 608017 - f 74 -9.8 -3.53012 | opp_overlap 608017 TTCTTCCCCCTGAAA GGCCGC CAATGT GCGGCC TTTTTTGTGTTCATG ecfR 608151 - 608675 + | ECF family sigma factor TERM 553 609053 - 609063 + G 74 -2.4 -4.89393 | GGAGGGTCATTATCG CCTC GGC GCGG TTTTTATCGAATTTG Avi_5598 608877 - 609617 + | Transcriptional regulator TERM 554 609842 - 609853 + F 70 -7.2 -4.07885 | opp_overlap 609835 TTCATAATTCCTGGA GCCG GACT CGGC TTTTGGGGGGGCGTC Avi_5599 610125 - 611354 + | MFS permease Avi_5600 611477 - 612628 + | hypothetical protein TERM 555 612637 - 612665 + F 100 -21.9 -4.11404 | opp_overlap 612646 CTGGTAAGTGGCAGA CGGCGAAGATGGT TTG ACCATCTTCGCCG TTTCTATCCTCTGAA TERM 556 612790 - 612737 - f 100 -28.5 -3.06815 | opp_overlap 612737 ATCCTTGCGAATACA GCACGACAGTCTCTTTTGGGCGCTC GATA AAATGCCCAAAAGAGACTGTCGTGC TTTAATTTTTCTGCC TERM 557 612737 - 612790 + F 100 -27.8 -4.38116 | opp_overlap 612737 ATCCTTGCGAATACA GCACGACAGTCTCTTTTGGGCGCT CGATAA AATGCCCAAAAGAGACTGTCGTGC TTTAATTTTTCTGCC Avi_5601 613415 - 613921 + | hypothetical protein Avi_5602 613931 - 615901 + | GGDEF family protein TERM 558 616445 - 616463 + G 75 -9.6 -3.93659 | overlap 616429 CGTGAAGATGGATAT CTGCAAGG CTT CTTTGCAG TTTCATGATTTTCGT Avi_5603 616068 - 616898 + | metal dependant beta lactamase protein TERM 559 618324 - 618335 + G 71 -7.2 -4.11216 | opp_overlap 618315 AATTCATCGGCGATG GCGC GATG GCGC TTTTCGGCGTCACAG cyaA 617045 - 618760 + | adenylate cyclase TERM 560 618786 - 618776 - f 74 -3.2 -5.00616 | CCTGCGGCGAAAAAA TCCG ATG CGAA AACAAAACGACAGTA TERM 561 618809 - 618789 - f 70 -6.9 -4.14511 | overlap 618794 AATCCGATGCGAAAA CAAAACGAC AGT ATCGTCTTG ATTCCATTGTGTTGA TERM 562 618804 - 618794 - f 77 -3.2 -5.09259 | overlap 618789 GATGCGAAAACAAAA CGAC AGT ATCG TCTTGATTCCATTGT TERM 563 619493 - 619468 - g 82 -10.5 -4.18018 | gap 1, opp_overlap 619484, overlap 619471 619491 GCTGCGCATTCAAAA CCATCT-GGCGG TTG CCGCCAAAATGG CTGTACTCAGCAAGC TERM 564 619669 - 619658 - g 74 -7.2 -4.40561 | opp_overlap 619658 CTGGCCGAAAAAGAA GGCC GCCA GGCC TATATCGATACGTTG cyaA 618953 - 620305 + | adenylate cyclase TERM 565 620954 - 620964 + G 71 -8.2 -4.08216 | overlap 620958 AAGGACGAGGTCGAG CCGC TGG GCGG TTTTACCGGCGATGC Avi_5606 620486 - 623200 + | ABC transporter nucleotide binding/ATPase protein TERM 566 623265 - 623278 + G 72 -9.5 -3.6543 | overlap 623266 CGAAGTCGAAATGTT GCGGC GTGT GCCGC TGTTTTCCCAGATTG Avi_5607 623236 - 623700 + | cAMP-dependent protein kinase regulatory subunit TERM 567 624260 - 624270 + G 71 -6.8 -4.21194 | opp_overlap 624259 GGTTTATGACAGTAT GCTC GAT GAGC TTTTCAGTGCTGAAA suhB 623859 - 624698 + | extragenic suppressor protein SuhB Avi_5609 625546 - 624677 - | hypothetical protein TERM 568 624728 - 624760 + g 74 -11.3 -3.53012 | GATCAGCGCTTGAAG TCCGACCGGATCGTC AGT GGTGATCTGGTCGCA TTTCAGCGCCAGCAG TERM 569 625310 - 625339 + g 75 -9.9 -3.86015 | gap 1, opp_overlap 625285 625283 CTGGTCCACTGAGGC GCCGCGCGCCGGGC CTT GGCCGGT-CGTGGC TTTGTCCAAAACCTC Avi_5610 626615 - 625533 - | ABC transporter nucleotide binding/ATPase protein TERM 570 625629 - 625640 + g 79 -7.2 -4.56775 | overlap 625628 CCTGACCTGCAATTC GGCG CGGT CGCC TTTTTGCCAGCCGGT Avi_5611 627468 - 626659 - | ABC transporter membrane spanning protein (sugar) Avi_5612 628369 - 627479 - | spermidine/putrescine ABC transporter permease protein Avi_5613 629556 - 628369 - | ABC transporter substrate binding protein TERM 571 630154 - 630166 + G 71 -6.9 -4.17048 | GCGTCAGGGGACGTG CCGGG TAA TCCGG TTATTTTACCAGAGG TERM 572 630326 - 630304 - g 77 -13.4 -2.88544 | opp_overlap 630300, overlap 630309 GTCGATGTCGACACA CCAGACGCCA TTA TGGCGGCTGG CGGAGTGTTGAACGG Avi_5614 629788 - 630345 + | hypothetical protein uxuA 631372 - 630359 - | mannonate dehydratase Avi_5617 632154 - 633452 + | flavin-containing amine oxidase TERM 573 633507 - 633530 + F 70 -10.2 -3.15861 | AGATTTTCAGCGTAA GGCGCATGCG GCAT CGGGTGCGCC TTGCTAGAAGTCATA Avi_5618 633816 - 634274 + | hypothetical protein Avi_5619 634324 - 634605 + | polyketide synthase Avi_5621 634711 - 635541 + | Amino acid adenylation protein TERM 574 639195 - 639212 + G 79 -12.7 -3.28791 | opp_overlap 639157 639158 CTCCTGCTGCCGCAT CCGCTGC ACCA GCAGCGG TTGTCCGCGACACCT Avi_5624 635579 - 642925 + | polyketide synthase TERM 575 643036 - 643011 - g 87 -7.5 -5.00616 | gap 1, overlap 643012 CCTCCTTGCAAAAAA CGACTCCCGCTC GAC GGGCGGG-GTCA AGGACTTCCGGATCG TERM 576 647373 - 647385 + G 72 -4.8 -4.56597 | TCAGCGGATCGCCCA GGCT GTCGA AGCC TTTTTGCAGCGCCAG Avi_5625 642922 - 650028 + | polyketide synthase Avi_5626 650044 - 651624 + | hypothetical protein Avi_5627 651663 - 653309 + | Acyl-CoA dehydrogenase Avi_5628 653387 - 655198 + | Acyl-CoA dehydrogenase Avi_5629 656191 - 655247 - | formamidase Avi_5630 657195 - 656209 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5631 658217 - 657192 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5632 659191 - 658220 - | ABC transporter membrane spanning protein (oligopeptide) dppC 660255 - 659203 - | ABC transporter membrane spanning protein (dipeptide) TERM 577 660166 - 660180 + g 74 -2.7 -5.0133 | overlap 660163 GGCACGGTGCCACGG GCTGG CACCA CCCGC TTTTTTGCGGGGCTG Avi_5634 662039 - 660333 - | hypothetical protein Avi_5637 662988 - 662095 - | hydrolases or acyltransferases (alpha/beta hydrolase superfamily) TERM 578 662272 - 662317 + g 71 -11.2 -3.21416 | gap 1, opp_overlap 662268, overlap 662271 662282 GCCGGAAATCAGCAG GGTCGGGACA-TTGATGGTCG AGAGC CGACCCTCAATTGTCCAGTCC TTCATGGTGCCGATG Avi_5638 663625 - 663020 - | Response regulator antiterminator domain-containing protein TERM 579 663297 - 663313 + g 71 -7.9 -4.09685 | AGGGCGCTATAGGCA CCGGTAG AGC CGACCGG TTTTAGGAGATGGGC Avi_5639 664854 - 663622 - | ABC transporter substrate binding protein TERM 580 664895 - 664862 - H 100 -6 -5.60993 | gap 2, opp_overlap 664862 664861, overlap 664863 664864 TCGCGCATAAAAAAA GCCCCG--GCTCGTCC GGGA AGACGAGTGGCGGGGC GTGTTTGCCTGCGGC TERM 581 665837 - 665852 + G 70 -2.5 -4.83169 | TTTTCCAAGGCCGGT CTGGA GCTTGA TCCGG TTTTTGTGACGGGGT Avi_5640 665201 - 666103 + | transcriptional regulator LysR family TERM 582 666137 - 666107 - f 72 -9.7 -3.33419 | overlap 666105 666101 ATGGGGAAATGAAGA TGTGCGTGTAGCG TTTTG CGCTCCACGCAGA ACACAAAAAACCGCA TERM 583 666160 - 666148 - f 91 -3.3 -5.5208 | opp_overlap 666148, overlap 666139 GCAGAACACAAAAAA CCGCA TTG TGTGG TTGCTTGCGAAATGA Avi_5641 666247 - 667773 + | ABC transporter substrate binding protein (oligopeptide) Avi_5642 667892 - 668842 + | ABC transporter membrane spanning protein (oligopeptide) TERM 584 668876 - 668890 + G 83 -4.9 -5.06414 | opp_overlap 668865 CAAAGCCGTCTACCA GGCGG CTCAC CCGTC TTTTTCTTCGCCCGA Avi_5643 668839 - 669705 + | ABC transporter TERM 585 670557 - 670576 + G 75 -5.6 -4.58283 | GTTCCCGGGTTTGCG CAGCTGCC GGAA GGTTGCTG TTTTTCCGACCGTTG Avi_5644 669702 - 670697 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5646 670697 - 671689 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 586 672214 - 672168 - g 80 -9.3 -4.1899 | gap 2, overlap 672169 GGATCTCAGCCAAAA CCCCGGCGGCTCCAGTGCCGGTG CGG CAGCGGCAG-GG-GCTGCCGGGT TCGGACCGCTGCATA TERM 587 672213 - 672169 - g 76 -12.8 -3.11073 | gap 2, overlap 672168 GATCTCAGCCAAAAC CCCGGCGGCTCCAGTGCCGGTG CGG CAGCGGCAG-GG-GCTGCCGGG TTCGGACCGCTGCAT gatA 671716 - 673110 + | glutamyl-tRNA amidotransferase subunit A Avi_5649 674920 - 673127 - | Allophanate hydrolase TERM 588 673266 - 673243 - G 72 -6.6 -4.2828 | CGTCATCCAGGAAAA CCGTGCCGAT ACAC ATCGGCGAGG GGATCATGTTGACGA TERM 589 674752 - 674742 - G 83 -8.2 -4.56597 | overlap 674743 674744 GTCTCCGGCGAAAAA GCGC CGA GCGC CTGGGCCTGATCCAG Avi_5650 675268 - 674924 - | Allophanate hydrolase Avi_5651 675932 - 675261 - | hypothetical protein Avi_5652 677455 - 675929 - | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 590 676322 - 676332 + g 70 -2.4 -4.74504 | opp_overlap 676322 CGCCTTGGCATTCAA CCAG AAC CGGG TTTTTCCCTTGGCAT Avi_5653 678513 - 677452 - | cyanuric acid amidohydrolase TERM 591 678258 - 678243 - G 72 -4.6 -4.59773 | opp_overlap 678252 GTTCACGGGCAAAAA TCGTCC AATG GGGCGA CAGCGCCCCTTCCGT TERM 592 678252 - 678267 + g 73 -11.8 -3.05384 | opp_overlap 678243 CAAAAATCGTCCAAT GGGGCG ACAG CGCCCC TTCCGTGCCGCCGGA Avi_5654 679211 - 678510 - | hypothetical protein Avi_5655 680236 - 679220 - | amidohydrolase TERM 593 680294 - 680270 - R 90 -11.4 -3.90291 | gap 1 ATTTCGTCAAGGAAA GCGCCG-CCGG AGCG CCGGACAGCGC CCGTGTCGGTGACGA Avi_5656 681179 - 680253 - | ABC transporter membrane spanning protein (sugar) Avi_5657 682357 - 681179 - | ABC transporter membrane spanning protein (sugar) Avi_5659 683630 - 682362 - | lipoprotein TERM 594 682900 - 682886 - G 75 -8.6 -4.07687 | ATTCGCCCGTGAAAA TCACCT GGC AGGTGA TGGACGGATCGACGG TERM 595 683615 - 683630 + g 74 -7.6 -4.19506 | overlap 683608 CTCTGGTTGCTGCCA GTGCAT CTGT ATGCAC TTTTAAAATTCAGAT Avi_5660 683830 - 684513 + | transcriptional regulator GntR family Avi_5661 686193 - 684532 - | ABC transporter nucleotide binding/ATPase protein TERM 596 685775 - 685806 + g 71 -11.4 -3.27476 | opp_overlap 685783 685785 685786 TTGGGGAGGGACAGC GCCCGAAACAGCGC CACG GCGCGGGTGCGGGC TTCATCCTTCGACAT Avi_5662 687065 - 686190 - | ABC transporter membrane spanning protein Avi_5663 688018 - 687062 - | ABC transporter membrane spanning protein Avi_5666 689812 - 688199 - | ABC transporter substrate binding protein (oligopeptide) hadL 690614 - 689895 - | 2-haloalkanoic acid dehalogenase bioA 692233 - 690860 - | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 597 692271 - 692252 - R 77 -2.8 -5.04385 | gap 1, overlap 692253 CAGATCTCCAAAAAA TCAGCCGAG GGC CT-GGCTGG CGAGTGCGTAGGTTT Avi_5669 693097 - 692252 - | hypothetical protein dehII 693473 - 694141 + | haloacid dehalogenase type II TERM 598 694625 - 694641 + G 85 -2.2 -5.52986 | opp_overlap 694626, overlap 694626 CCATCGGAGTTAAAA AGTGAG GTTGG CTCACC TTTTTTTGGTGCCAT TERM 599 694640 - 694626 - g 75 -5.7 -4.66609 | opp_overlap 694625 694626 CATCGGAGTTAAAAA GTGAG GTTGG CTCAC CTTTTTTTGGTGCCA ordL 694145 - 695419 + | oxidoreductase Avi_5672 695605 - 695808 + | hypothetical protein TERM 600 695783 - 695825 + T 100 -9.8 -5.10656 | opp_overlap 695787, overlap 695784 695791 ACGGTGACGCCTCAA GCGAGCGCCTGTCGGGTTCA GAT TGAACCGGACAGATTCTCGA TTTTCTTGTTTTCGT TERM 601 695784 - 695824 + T 93 -13.3 -3.63953 | opp_overlap 695787, overlap 695783 695791 CGGTGACGCCTCAAG CGAGCGCCTGTCGGGTTCA GAT TGAACCGGACAGATTCTCG ATTTTCTTGTTTTCG TERM 602 695791 - 695817 + T 85 -13.8 -2.7246 | opp_overlap 695787, overlap 695784 695783 GCCTCAAGCGAGCGC CTGTCGGGTTCA GAT TGAACCGGACAG ATTCTCGATTTTCTT Avi_5673 697329 - 695899 - | aldehyde dehydrogenase TERM 603 696918 - 696884 - G 74 -7.8 -4.24404 | overlap 696877 696885 ATGGAAACCGGAAAA TTCCATGGCGTGATCG CTC CGACCACGCCATAAGG CTCGCTCATGATCAT Avi_5674 697743 - 697387 - | hypothetical protein argE 698889 - 697759 - | acetylornithine deacetylase Avi_5677 699689 - 699084 - | regulatory protein TERM 604 699895 - 699914 + G 74 -7.8 -4.19735 | GCGATTTCTTGTTGC GGGTTGCG CTAT TGCAGCCC TTTCCTTTTCCACCC Avi_5678 699866 - 701026 + | RND multidrug efflux membrane permease Avi_5679 701030 - 704185 + | AcrB/AcrD/AcrF family protein TERM 605 704213 - 704255 + F 100 -17.8 -3.71607 | opp_overlap 704215, overlap 704214 704217 AGCGTATCGTTTGAA AAGACCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGGTCAA TTTACGTGATATTCC TERM 606 704214 - 704254 + F 100 -21.3 -2.82482 | opp_overlap 704215, overlap 704213 704217 GCGTATCGTTTGAAA AGACCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGGTCA ATTTACGTGATATTC TERM 607 704253 - 704215 - f 100 -20.4 -4.08767 | opp_overlap 704214 704213 704217 CGTATCGTTTGAAAA GACCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGGTC AATTTACGTGATATT TERM 608 704217 - 704251 + F 100 -21.6 -2.66748 | opp_overlap 704215, overlap 704214 704213 TATCGTTTGAAAAGA CCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGG TCAATTTACGTGATA TERM 609 704366 - 704405 + F 73 -9.4 -3.60296 | opp_overlap 704374, overlap 704374 704375 TAAAATGTCTTTTCT GCATGATACCTTAAGCCG ATTC CGGTTTAAGCTTTTATGC TTTAAGGTCCGCGTG TERM 610 704374 - 704397 + F 77 -6 -4.61566 | opp_overlap 704374, overlap 704366 704375 CTTTTCTGCATGATA CCTTAAGCCG ATTC CGGTTTAAGC TTTTATGCTTTAAGG Avi_5680 704439 - 705971 + | propionyl-CoA carboxylase Avi_5681 706051 - 706428 + | hypothetical protein Avi_5682 706486 - 706842 + | hypothetical protein TERM 611 707654 - 707672 + G 75 -8.8 -3.97947 | opp_overlap 707654, overlap 707655 GGCGGTTGGATATTA TTCCGCCG GCA CGGTGGAG TTTATCGTCGATGGC accC 706845 - 708845 + | acetyl-CoA carboxylase biotin carboxylase Avi_5684 709237 - 708887 - | KluB Avi_5686 709508 - 709239 - | hypothetical protein TERM 612 710950 - 710895 - g 100 -19.6 -3.21099 | opp_overlap 710943, overlap 710876 710920 710921 GGGTGGCATGACCAA GGCGGTGGCTGACGGCCTGCCCAAAC GCCT GATCGAGGAGGCCGCCACCCGCCGCC AGGCGGCTGTGGACC mutA 709627 - 711765 + | methylmalonyl-CoA mutase Avi_5688 711870 - 712334 + | transcriptional regulator TERM 613 713198 - 713185 - g 74 -8.1 -4.2349 | overlap 713186 CGTCGAGACGGAAAA GGCTG GCGC CAGCC TGCTGGCTCGGATCA Avi_5689 712340 - 714415 + | hypothetical protein TERM 614 714580 - 714598 + F 70 -6.6 -4.13995 | overlap 714582 GATGTTGCGCTCTTT GTCCTGCT GAC GGCAGGTC TTTCCTTTCTAACAC Avi_5690 714627 - 715508 + | HlyD family secretion protein Avi_5691 716523 - 715681 - | fumarylacetoacetate (FAA) hydrolase family protein Avi_5692 717302 - 716568 - | oxidoreductase Avi_5693 718653 - 717517 - | Non-ribosomal peptide synthetase domain-containing protein TERM 615 718753 - 718782 + r 72 -10.7 -2.99319 | opp_overlap 718743 718753 718754 718756, overlap 718775 718776 GGATAGTGAGGACAA TCACGATGAAGCC AAAA GGCCTCGTCGTGG TCTATCTACGACATT TERM 616 718781 - 718754 - R 73 -12 -2.65774 | opp_overlap 718753 718775 718776, overlap 718743 718753 718756 GATAGTGAGGACAAT CACGATGAAGCC AAAA GGCCTCGTCGTG GTCTATCTACGACAT Avi_5694 719620 - 718853 - | hypothetical protein Avi_5696 720504 - 719755 - | calcium-binding protein TERM 617 720262 - 720237 - G 70 -4.6 -4.42386 | gap 1, opp_overlap 720237 720249, overlap 720239 TGTCGATGCAGAAAA GCCGC-CCGAG ATGGG CACGATGCGGC TCTATACTGCCGCAC Avi_5697 722318 - 720612 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 618 721194 - 721158 - G 74 -11 -3.53091 | gap 1, opp_overlap 721150 721147 721160, overlap 721186 ATGTGGGTCCTGAAA CACCATGCG-CATTTCC GTAT AGAGATGACGCATGGTG TTGCGCGATGCTTTG TERM 619 721798 - 721778 - G 73 -12.6 -2.79796 | overlap 721758 GCGGATTGCACGACA GCGCCATG GCGAT CATGGCGC GCTGGCGCATGCCGC TERM 620 722072 - 722082 + g 71 -8.2 -4.07568 | overlap 722064 722058 TGGCGATGTCGCGGT CGGC TTT GCCG TTTTCGCCAGCGAGA Avi_5698 723491 - 722328 - | ABC transporter membrane spanning protein (oligopeptide) Avi_5699 724471 - 723488 - | ABC transporter membrane spanning protein (oligopeptide) Avi_5700 726606 - 724690 - | ABC transporter substrate binding protein (oligopeptide) TERM 621 726667 - 726710 + r 100 -14 -4.09519 | opp_overlap 726677 726680, overlap 726671 726677 CTTCGCTGCATTTGC CAGCCGAAAAGAATAGACGC TCCC GGGTCTATTCTTTTCGTCAG TTGTTTCTCACTGCT TERM 622 726671 - 726706 + r 100 -16.4 -2.73799 | opp_overlap 726677 726680, overlap 726667 726677 GCTGCATTTGCCAGC CGAAAAGAATAGACGC TCCC GGGTCTATTCTTTTCG TCAGTTGTTTCTCAC TERM 623 726700 - 726677 - R 77 -8.2 -4.13767 | opp_overlap 726671 726667 726677, overlap 726680 TTTGCCAGCCGAAAA GAATAGACGC TCCC GGGTCTATTC TTTTCGTCAGTTGTT TERM 624 726677 - 726700 + r 81 -8.2 -4.32651 | opp_overlap 726677 726680, overlap 726671 726667 TTTGCCAGCCGAAAA GAATAGACGC TCCC GGGTCTATTC TTTTCGTCAGTTGTT Avi_5701 727623 - 726718 - | 5-dehydro-4-deoxyglucarate dehydratase Avi_5703 727834 - 728574 + | transcriptional regulator GntR family dapE 728657 - 730036 + | succinyl-diaminopimelate desuccinylase celI 730153 - 731040 + | hypothetical protein TERM 625 731401 - 731390 - g 74 -7.2 -4.25848 | AAGCGCCGATGAAAA CGGC ATGC GCCG CGATGTCATCGATCT Avi_5707 731250 - 732773 + | alpha-L-arabinofuranosidase Avi_5708 732821 - 733921 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_5709 733914 - 734864 + | ABC transporter membrane spanning protein (sugar) TERM 626 735238 - 735257 + G 71 -7.2 -4.14472 | gap 1, overlap 735219 GCCGGAGCAGGCGGT TCTGGTTGC CCG GCA-CCAGA TTTTCAGCATGTTGA Avi_5710 734861 - 735703 + | ABC transporter membrane spanning protein (sugar) Avi_5711 735746 - 737092 + | sugar uptake ABC transporter periplasmic solute-binding protein precursor TERM 627 737144 - 737096 - T 77 -6.2 -4.62471 | gap 2, opp_overlap 737105 737106 737108, overlap 737101 737103 737104 GGCAATCTGTAAAAA CAAGATAGGTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-C-TATTTTA CAGTGCCGATACCAG TERM 628 737139 - 737101 - T 72 -8.3 -3.80746 | gap 2, opp_overlap 737105 737106 737108, overlap 737096 737103 737104 TCTGTAAAAACAAGA TAGGTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-C-TA TTTTACAGTGCCGAT TERM 629 737138 - 737103 - T 71 -9 -3.47868 | gap 1, opp_overlap 737105 737106 737108, overlap 737101 737096 737104 TGTAAAAACAAGATA GGTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-CT ATTTTACAGTGCCGA TERM 630 737137 - 737104 - T 76 -12.5 -2.67636 | gap 1, opp_overlap 737105 737106 737108, overlap 737103 737101 737096 GTAAAAACAAGATAG GTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-C TATTTTACAGTGCCG TERM 631 737105 - 737139 + T 83 -10.2 -4.13945 | gap 2, opp_overlap 737104 737103 737101 737096, overlap 737106 737108 TAAAAACAAGATAGG T-G-AGCGCCCAAAGC CAAAA GCTTTGGGCGCTGCTA TTTTACAGTGCCGAT TERM 632 737106 - 737137 + T 100 -15.3 -3.6692 | gap 1, opp_overlap 737104 737103 737101 737096, overlap 737105 737108 AAAAACAAGATAGGT G-AGCGCCCAAAGC CAAAA GCTTTGGGCGCTGC TATTTTACAGTGCCG TERM 633 737108 - 737134 + T 100 -18.1 -2.94337 | opp_overlap 737104 737103 737101 737096, overlap 737106 737105 AAACAAGATAGGTGA GCGCCCAAAGC CAAAA GCTTTGGGCGC TGCTATTTTACAGTG Avi_5713 737618 - 737142 - | 6,7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (Lumazine synthase 2) (Riboflavin synthase 2 beta chain) Avi_5715 737732 - 737953 + | hypothetical protein TERM 634 737962 - 738010 + T 74 -7.6 -4.07568 | gap 2, overlap 737956 AGGTTAGTGGTCCGA TTCCGACATTTGC-CTC-CGTTTG CAG CACCCTCGAGAGCAAATGTCGGAA TTTTCAGGACCACGA Avi_5716 739014 - 738115 - | transcriptional regulator LysR family TERM 635 738750 - 738788 + g 77 -12.4 -3.53811 | opp_overlap 738771 GATTGGCCTTCAGCG TTAGCGATGCGGTGCTGA TAA TCCGCAGCGCATCGCGGA TTTCGCGGGCATAGA ordL 739229 - 740512 + | oxidoreductase Avi_5719 740572 - 742107 + | aldehyde dehydrogenase TERM 636 742156 - 742108 - T 85 -11.8 -3.63515 | gap 1, opp_overlap 742111 742112, overlap 742111 TTCGACGTCGAATAA TCAGTTGCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGA-TAC TTCAATCCTTTACGG TERM 637 742154 - 742111 - T 100 -18.2 -2.93549 | opp_overlap 742111 742112, overlap 742108 GACGTCGAATAATCA GTTGCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGAT ACTTCAATCCTTTAC TERM 638 742111 - 742156 + T 100 -16.4 -3.1634 | gap 2, opp_overlap 742111 742108, overlap 742112 GACGTCGAATAATCA GT-T-GCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGATAC TTCAATCCTTTACGG TERM 639 742112 - 742153 + T 100 -23.9 -2.7795 | opp_overlap 742111 742108, overlap 742111 ACGTCGAATAATCAG TTGCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGA TACTTCAATCCTTTA Avi_5720 743030 - 742158 - | oxidoredutase Avi_5722 743446 - 743027 - | hypothetical protein TERM 640 744175 - 744160 - g 73 -3.2 -4.7254 | AGCCCGGATGAAAAA CGGC TTTACGTG GCCG ATACTGGCCGTATGC Avi_5723 743611 - 744501 + | gluconolactonase precursor Avi_5724 745799 - 744522 - | Glycosyl transferase Avi_5725 746946 - 746023 - | DNA-binding HTH domain-containing protein lysA 748729 - 747479 - | diaminopimelate decarboxylase TERM 641 747937 - 747962 + g 79 -12.5 -3.29263 | opp_overlap 747935 747936, overlap 747934 747936 747940 CCGCCGTCAGAAACC GGCCCGGCTCG ATTT CGAGCCGGATC TTGTGGCGCAGATAT TERM 642 747940 - 747959 + g 81 -15 -2.52623 | opp_overlap 747935 747936, overlap 747934 747936 747937 CCGTCAGAAACCGGC CCGGCTCG ATTT CGAGCCGG ATCTTGTGGCGCAGA TERM 643 748843 - 748876 + r 73 -9.5 -3.64236 | gap 1, opp_overlap 748843 748845, overlap 748834 748845 GACATATGGCAAAAA T-ACCGGCGAAGCGCT ACA GGCGCGCCGCCGGTCA TTTGGCAGTTTCAAT TERM 644 748875 - 748843 - R 100 -12.6 -4.65838 | opp_overlap 748843 748834 748845, overlap 748845 GACATATGGCAAAAA TACCGGCGAAGCGC TACAG GCGCGCCGCCGGTC ATTTGGCAGTTTCAA TERM 645 748845 - 748873 + r 86 -13.7 -2.93381 | opp_overlap 748843 748845, overlap 748843 748834 CATATGGCAAAAATA CCGGCGAAGCGCT ACA GGCGCGCCGCCGG TCATTTGGCAGTTTC TERM 646 748873 - 748845 - R 100 -15.2 -3.93817 | opp_overlap 748845 748843 748834, overlap 748843 CATATGGCAAAAATA CCGGCGAAGCGC TACAG GCGCGCCGCCGG TCATTTGGCAGTTTC mdeA 750107 - 748920 - | methionine gamma-lyase TERM 647 749062 - 749083 + g 71 -10.1 -3.53012 | GAAATGCTGAGTGCC GCCTTGGCG GGAA CGACAAGGC TTTCCGGCCCACCCC Avi_5728 751516 - 750104 - | hypothetical protein TERM 648 750674 - 750646 - G 73 -11.8 -3.11291 | gap 1, overlap 750638 GGCAGAAGCCGAAGA CCGGC-AATTGCC CGAA GGCAATCAGCCGG ATGGCAATGGCAATG Avi_5729 752565 - 751516 - | acetylase TERM 649 753466 - 753504 + G 71 -10.2 -3.52963 | overlap 753469 753487 TGTCCTTGCATCCTC TTATCGGCGACCGGTCGG CAC TCGACCGGTTGGCGGTCG ATTTTCTTGTTGGAC TERM 650 753469 - 753501 + G 82 -14.1 -2.88634 | overlap 753466 753487 CCTTGCATCCTCTTA TCGGCGACCGGTCGG CAC TCGACCGGTTGGCGG TCGATTTTCTTGTTG TERM 651 753487 - 753505 + G 100 -10.3 -4.90079 | overlap 753469 753466 GCGACCGGTCGGCAC TCGACCG GTTGG CGGTCGA TTTTCTTGTTGGACT TERM 652 756176 - 756201 + G 82 -13.3 -3.18366 | gap 1, opp_overlap 756159, overlap 756174 756171 CGGGGCGATCTATCT GCGCCGCGACGG CGA CCGTC-CGGTGC TCTATTGCTTCCCGG Avi_5730 753003 - 756986 + | peptide synthetase TERM 653 756978 - 756994 + F 70 -3.6 -4.68908 | opp_overlap 756980, overlap 756980 CTGGCCATTCAAGTC AAGCCG TAATC CGGCTC TTTATTTTCCCTCCC Avi_5731 757042 - 758358 + | L-ornithine N5-oxygenase TERM 654 758461 - 758414 - f 100 -12.3 -4.80453 | gap 1, overlap 758415 758416 758459 CGATGAGAAAACAAA GTCCTATTGCATCGTACAGA TTCCAACGT TCAGTACGATGCAATAGG-C GGGGTCAATGCTGCC TERM 655 758461 - 758415 - f 86 -12.5 -3.47187 | overlap 758414 758416 758459 GATGAGAAAACAAAG TCCTATTGCATCGTACAGA TTCCAACGT TCAGTACGATGCAATAGGC GGGGTCAATGCTGCC TERM 656 758460 - 758416 - f 100 -16 -2.67228 | overlap 758414 758415 758459 ATGAGAAAACAAAGT CCTATTGCATCGTACAGA TTCCAACGT TCAGTACGATGCAATAGG CGGGGTCAATGCTGC pfrI 758734 - 759357 + | sigma factor Avi_5733 759503 - 759976 + | acetylase Avi_5734 760812 - 760027 - | iron reductase Avi_5735 761864 - 760929 - | transcriptional regulator AraC family TERM 657 761236 - 761257 + g 77 -2.3 -5.03314 | gap 1 ATCGTGTCAGGTGCG TGCT-CGC CGATGAA GCGCAGCA TTTTTTCCACATGCA TERM 658 761583 - 761568 - G 74 -7.5 -4.25527 | ATAAAGACAGATAAA GCGGG TGCCTT CCCGC CGGTCGATCACCTGA Avi_5736 762130 - 763362 + | ABC transporter, substrate-binding protein TERM 659 763375 - 763408 + F 100 -13.1 -4.18018 | overlap 763376 TAATCGGTTCTCCCG ACGGCCGGATGTCGC GCAA GTGGCATTCGGCCGA TTTTCAGTCACAGAA TERM 660 763376 - 763407 + F 100 -16.6 -3.10597 | overlap 763375 AATCGGTTCTCCCGA CGGCCGGATGTCGC GCAA GTGGCATTCGGCCG ATTTTCAGTCACAGA Avi_5738 763476 - 764384 + | ABC transporter membrane spanning protein (sugar) TERM 661 765148 - 765175 + G 70 -2.6 -4.77036 | TTCTGCCGGGTCGAT CGTCGCGGCC TTGCCACC GGTCGCCATG TTTTTCCTGATGCAG Avi_5739 764381 - 765235 + | ABC transporter membrane spanning protein Avi_5740 765232 - 767337 + | Alpha-galactosidase TERM 662 767693 - 767678 - g 89 -6.1 -5.1675 | GCACGGACCAAAAAA GCAGC CGAATT GCTGC AACTGGATGCGCTGA Avi_5741 767330 - 768427 + | ABC transporter nucleotide binding/ATPase protein Avi_5742 768427 - 770355 + | beta-galactosidase TERM 663 770391 - 770415 + T 100 -15.1 -3.36878 | opp_overlap 770391 770410, overlap 770407 770408 ATATTGTCGAGAAAA TGCGTCTCCTT TGC AAGGAGGCGCA TTCTCGATGCGTCGC TERM 664 770415 - 770391 - T 100 -12.9 -4.38154 | opp_overlap 770391 770407 770408, overlap 770410 ATATTGTCGAGAAAA TGCGTCTCCTT TGC AAGGAGGCGCA TTCTCGATGCGTCGC Avi_5743 771049 - 770519 - | hypothetical protein soxA 774005 - 771042 - | sarcosine oxidase alpha subunit TERM 665 771092 - 771080 - G 77 -2.6 -5.1356 | TGGGATCAACAAAAA CCGG GCTGA CCAG CTTGGCGGGCGTAAA TERM 666 771459 - 771470 + g 70 -3.6 -4.65895 | overlap 771468 ATTGATTTCATTGTG GGTC ACAT GGCC TTTTTCGATGCGCAG TERM 667 773149 - 773159 + g 71 -6.8 -4.2461 | TCCTCGGCACCCGTG GCCA AAA TGGC TTTCTTCGTCGCAAT TERM 668 773944 - 773920 - G 74 -7.1 -4.26076 | opp_overlap 773920 GTATCGCCAGCAAAA CCGTTCATGGC TTT GCCATCAAAGG TGAAGGCAAGCGCGG soxD 774274 - 774002 - | sarcosine oxidase delta subunit soxB 775536 - 774286 - | sarcosine oxidase beta subunit TERM 669 775424 - 775394 - G 79 -12.5 -3.27525 | overlap 775389 775396 GTTTTGGAAAGGTAA TAGGCGGTGGCCA GCCCA TGGCCACCGCCGC CAACAATCACCACAT TERM 670 775422 - 775396 - G 100 -19.5 -3.20349 | overlap 775394 775389 TTTGGAAAGGTAATA GGCGGTGGCCA GCCCA TGGCCACCGCC GCCAACAATCACCAC TERM 671 775471 - 775483 + g 78 -3.3 -5.06414 | overlap 775472 CTCCGGCTGTCGCCA ATGGG CGG CCCAG TTTTTATTGCCACGA TERM 672 775527 - 775515 - G 79 -5.5 -4.83615 | GACCGTTCAGAAAAA TCGAC AAA GCCGA ATAGCGCATGATGCC glxA 775665 - 776618 + | transcriptional regulator AraC family Avi_5748 776659 - 777318 + | transcriptional regulator purF 777408 - 778313 + | amidophosphoribosyltransferase fwdC 778324 - 779010 + | formyl-methanofuran dehydrogenase TERM 673 779085 - 779068 - f 83 -5.5 -5.0538 | overlap 779069 TGCGAGCGCAAAAAA GTGGGGT CCTG ACCCCAG GAGATCGCTATGAGC TERM 674 779084 - 779069 - f 73 -9 -3.62746 | overlap 779068 GCGAGCGCAAAAAAG TGGGGT CCTG ACCCCA GGAGATCGCTATGAG TERM 675 779922 - 779907 - g 78 -9 -4.18018 | opp_overlap 779913 TGTGTTTATCGAAAA TGTCGG CATG CCGACA CTGGCCTGTATTCGC TERM 676 780143 - 780127 - g 74 -2.2 -4.89233 | gap 1, opp_overlap 780135, overlap 780128 780129 GAGGAATATCAAAAA CTCGGCA CCAC CGCCG-G CGCTTATGATGACTG gltB 779095 - 780423 + | glutamate synthase large subunit TERM 677 780403 - 780417 + F 70 -7 -4.14739 | opp_overlap 780396, overlap 780404 GGCACCAACTGGTAT CCCGGC AAA GCCGGA TTTTAACATCCATGG TERM 678 780404 - 780416 + F 72 -10.5 -3.08522 | opp_overlap 780396, overlap 780403 GCACCAACTGGTATC CCGGC AAA GCCGG ATTTTAACATCCATG TERM 679 780431 - 780459 + F 74 -7.4 -4.06502 | overlap 780447 GATTTTAACATCCAT GGCCGCGC AAACCTCCCAAGG GCGCGGCC TTTCCTTTCAACATG glnA 780505 - 781812 + | glutamine synthetase tphA 783201 - 781855 - | MFS permease TERM 680 782550 - 782538 - G 76 -4.8 -4.7373 | GCATCTCAGCAAAAA CAGG GGTTT CCTG AAGCCAGCGGCGCAG lldA 784462 - 783302 - | L-lactate dehydrogenase TERM 681 784582 - 784554 - R 72 -7.4 -3.92869 | gap 1, opp_overlap 784557, overlap 784556 784557 784559 GTAGCCATTCACAAA GAGGACCGCCCAG ATTG CTGGACGG-CCTT TAAACTGTGTCGCGC TERM 682 784580 - 784556 - R 74 -10 -3.55378 | gap 1, opp_overlap 784557, overlap 784554 784557 784559 AGCCATTCACAAAGA GGACCGCCCAG ATTG CTGGACGG-CC TTTAAACTGTGTCGC TERM 683 784580 - 784557 - R 77 -12.4 -2.72745 | opp_overlap 784557, overlap 784556 784554 784559 GCCATTCACAAAGAG GACCGCCCAG ATTG CTGGACGGCC TTTAAACTGTGTCGC TERM 684 784578 - 784559 - R 75 -11.4 -2.90511 | opp_overlap 784557, overlap 784556 784557 784554 CATTCACAAAGAGGA CCGCCCAG ATTG CTGGACGG CCTTTAAACTGTGTC Avi_5755 785883 - 784606 - | ABC transporter substrate binding protein (sugar) TERM 685 784730 - 784740 + g 89 -2.4 -5.79595 | ATCTGCTGGTAAAGC GCCG AGC CGCC TTTTTTCTTTTCAAA TERM 686 786487 - 786525 + G 71 -7.5 -4.20531 | overlap 786490 GCGGATCTGGGTGAA TGGCG-CGGAGCAGGTTCG CTT CGAACC-GTTCCGGCGTAA TTTTGAATCCATGTC TERM 687 787146 - 787194 + G 75 -9.6 -3.89131 | gap 1, opp_overlap 787146 787160, overlap 787148 787192 CAGTGCTGGAGAAAC TCCTGAGCGATACACTCGCCG CCATCGAC CGGCGGGAGGATTGCTC-GGA TTTCGTCCTTGTTCC TERM 688 788338 - 788369 + G 72 -5.8 -4.5442 | gap 1, overlap 788345 GGGCTGGGTGGCCAT TGTCGGA-GCCGGGG ACG CGCCGGCTTTCGAGA TTTTCTGCTTGAAAG TERM 689 788345 - 788361 + G 72 -9.3 -3.67737 | overlap 788338 GTGGCCATTGTCGGA GCCGGGG ACG CGCCGGC TTTCGAGATTTTCTG TERM 690 788562 - 788577 + G 71 -10.4 -3.55378 | overlap 788560 GCGCCCAACCGGATC GGGGTG AAAT CACCCC TCTTTATCAGTAGAT Avi_5757 786074 - 788590 + | hypothetical protein TERM 691 789011 - 788977 - g 78 -6.4 -4.56775 | overlap 788979 ATGGCTGGTGAAAAA CCTGCCGAAAACCG AGGATGG CGGCTTCCAGCATG TGGTCAAGGAACGCC TERM 692 789248 - 789217 - g 75 -12.3 -3.28924 | gap 1, opp_overlap 789244 789247 TATCGGTCGTCATAA CTTTG-CCCGCGCC TTCTG GGCGCGGGGCAATG CCTGGATCACCGTGG Avi_5758 788603 - 789697 + | hypothetical protein Avi_5759 789772 - 791022 + | polygalacturonase Avi_5760 791046 - 792164 + | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 693 792552 - 792577 + G 83 -8.3 -4.57073 | gap 1, overlap 792557 792569 792570 TCACGGCGCTGATCC TCAACCGCGCCA TGG TGGCGCG-TGGA TTTTTCCGGGCGATG TERM 694 792557 - 792573 + G 76 -13.7 -2.83903 | overlap 792552 792569 792570 GCGCTGATCCTCAAC CGCGCCA TGG TGGCGCG TGGATTTTTCCGGGC Avi_5762 792206 - 793150 + | ABC transporter membrane spanning protein (sugar) Avi_5763 793152 - 794204 + | ABC transporter membrane spanning protein (sugar) purR 795232 - 794219 - | transcriptional regulator LacI family TERM 695 795209 - 795233 + g 79 -6.9 -4.60487 | CGAGGCGGTGCTGAT CGAGACGCCGG CGT CCAGCGCCACG TTTTTCAGGCTGATC Avi_5766 796454 - 795318 - | Patatin-like phospholipase domain-containing protein TERM 696 796571 - 796605 + r 100 -16.5 -3.78934 | opp_overlap 796576, overlap 796574 796576 GCTCTGCTTCATTCA TGAGATCCGTGCGCC GGTAA GGCGCACGGATCTGG TTATTATCAGGCGGC TERM 697 796574 - 796602 + r 100 -20.4 -2.98545 | opp_overlap 796576, overlap 796571 796576 CTGCTTCATTCATGA GATCCGTGCGCC GGTAA GGCGCACGGATC TGGTTATTATCAGGC TERM 698 796576 - 796600 + r 100 -17.2 -3.04443 | opp_overlap 796576, overlap 796574 796571 GCTTCATTCATGAGA TCCGTGCGCC GGTAA GGCGCACGGA TCTGGTTATTATCAG TERM 699 796600 - 796576 - R 100 -17.2 -2.80816 | opp_overlap 796576 796574 796571 GCTTCATTCATGAGA TCCGTGCGCC GGTAA GGCGCACGGA TCTGGTTATTATCAG adhP 797640 - 796612 - | alcohol dehydrogenase TERM 700 797724 - 797762 + r 81 -8.9 -4.30987 | gap 1, overlap 797720 GGACCCTAGTGCAGG GCGGGGC-GATTGCTTTT GATT GATATCAATCCGCCCCGC TTTGTTGTGGCAGGT dlhH 798669 - 797782 - | carboxymethylenebutenolidase TERM 701 798758 - 798702 - R 100 -15.4 -4.13767 | gap 1, opp_overlap 798711, overlap 798685 798706 798711 TTGTCCAGTCTAAAA GATAGAAAACCCGAACCGGCATCCAAT GTTC ATGGGAGGCCAATCCGGGTTTTC-ATC AACACTTATTCGTGA TERM 702 798755 - 798706 - R 100 -17.3 -3.41366 | opp_overlap 798711, overlap 798685 798702 798711 CCAGTCTAAAAGATA GAAAACCCGAACCGGCATCCAAT GTTC ATGGGAGGCCAATCCGGGTTTTC ATCAACACTTATTCG TERM 703 798750 - 798711 - R 100 -11.4 -4.78933 | opp_overlap 798711, overlap 798685 798706 798702 CTAAAAGATAGAAAA CCCGAACCGGCATCCAAT GTTC ATGGGAGGCCAATCCGGG TTTTCATCAACACTT guaB 800384 - 798786 - | inosine-5`-monophosphate dehydrogenase oxyR 801364 - 800441 - | transcriptional regulator LysR family TERM 704 800917 - 800870 - G 73 -3.2 -4.72986 | CACGGCCATGAAAAA CCGATCGACGAGCAGGCTGCGG CAGA CCAGAGCGTCCGCATCCACCGG TAGCGCCGCGACGAC TERM 705 801372 - 801408 + H 80 -12 -3.30243 | gap 1, opp_overlap 801372 801380, overlap 801370 GTCAGCATGATAGGA TTTCCAAATCGTATTTA AAAA TAAATACGA-TTGGAAA TTATCGGCCGTCAAT TERM 706 801408 - 801372 - H 73 -12 -2.67515 | gap 1, opp_overlap 801370 801372, overlap 801380 GTCAGCATGATAGGA TTTCCAAATCGTATTTA AAAA TAAATACGA-TTGGAAA TTATCGGCCGTCAAT TERM 707 801743 - 801703 - H 78 -10.5 -3.53444 | gap 1, opp_overlap 801703 801705, overlap 801704 GTATCTGTTTCGAAA GGGGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGAC-CCCCT GTTTTGTATGGGTTT TERM 708 801703 - 801744 + H 100 -11.6 -4.59081 | opp_overlap 801703 801704, overlap 801705 GTATCTGTTTCGAAA GGGGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGACCCCCTG TTTTGTATGGGTTTA TERM 709 801742 - 801704 - H 85 -14 -2.71924 | gap 1, opp_overlap 801703 801705, overlap 801703 TATCTGTTTCGAAAG GGGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGAC-CCCC TGTTTTGTATGGGTT TERM 710 801705 - 801742 + H 100 -16.4 -3.89301 | opp_overlap 801704 801703, overlap 801703 ATCTGTTTCGAAAGG GGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGACCCCC TGTTTTGTATGGGTT Avi_5773 801869 - 802495 + | transcriptional regulator TetR family Avi_5774 803546 - 802548 - | transcriptional regulator LysR family TERM 711 802827 - 802817 - G 70 -4.6 -4.45168 | overlap 802818 CCGGCAAAACAGAAA CGGC CAA GCCA GCCAGCACTGCGGCG TERM 712 803428 - 803396 - G 72 -9.7 -3.65351 | opp_overlap 803394 GCATCTGCATGGAAA CGGCTGATTGGGTCT TGA AGACCCGCCCTGCCG CCTTGGTAAAACTGC Avi_5775 803728 - 804027 + | hypothetical protein TERM 713 804086 - 804114 + T 100 -15.4 -5.71712 | gap 1, overlap 804081 804087 ATCGGCCCTGCTTTT G-CCCGGCAACAG TTCA CTGTTGCCGGGTC TTTTTTTGTGTGCCG TERM 714 804087 - 804112 + T 100 -19.1 -4.50122 | overlap 804081 804086 TCGGCCCTGCTTTTG CCCGGCAACAG TTCA CTGTTGCCGGG TCTTTTTTTGTGTGC Avi_5777 805062 - 804163 - | hypothetical protein Avi_5779 806708 - 805335 - | glutamate--cysteine ligase TERM 715 805964 - 805954 - G 76 -4.6 -4.82756 | overlap 805949 ACATAATCAATAAAA CCGA AAT CCGG TTTGAACACGAAGGG TERM 716 806723 - 806733 + r 77 -3.2 -5.09259 | TGAAGCCGACCTTGT TCTG CTA CAGG TTTTATTTTCGCATC TERM 717 806747 - 806781 + r 84 -13.6 -2.52543 | GGTTTTATTTTCGCA TCGGGCCGAAAACCGG TTT CCACTTTTCGGTCCGA TGCGTTACCGAGGGT Avi_5780 807624 - 806887 - | hypothetical protein pit 809146 - 807644 - | phosphate permease Avi_5783 809982 - 809494 - | NTP pyrophosphohydrolase MutT family TERM 718 809946 - 809917 - G 74 -11.5 -3.56594 | opp_overlap 809921, overlap 809908 GCAAAGCGCGGCAAA TTGCTGCTTCGGC GGGC GCCGAAACATCAA TTCCAAATCCGACAC TERM 719 811069 - 811089 + G 72 -9.7 -3.6608 | GCAACTTCTCCAGGA TCTTGCCGT GAA GCGGCAGGA TTTCGATGAGGTGAT Avi_5784 810440 - 811846 + | hypothetical protein TERM 720 813112 - 813100 - g 70 -4.1 -4.57569 | CTATGTTTTGAAAAA GACCT CGG AGATC ATTGACCGTTACGGC TERM 721 813311 - 813325 + G 75 -8.6 -4.08945 | opp_overlap 813304, overlap 813322 ATCGAAAAGCGCGAC CTGATG CGC CATCAG TTTTCCAAGGCTGAT glcD 811997 - 813430 + | glycolate oxidase subunit GlcD TERM 722 813679 - 813693 + G 74 -11.4 -3.53091 | opp_overlap 813679 GCGGTGACTGAGAAA GGCCAG TCG CTGGCC TTTGAACCGCCGGAT TERM 723 813693 - 813679 - g 81 -11.4 -3.91897 | opp_overlap 813679 GCGGTGACTGAGAAA GGCCAG TCG CTGGCC TTTGAACCGCCGGAT glcE 813427 - 814644 + | glycolate oxidase subunit glcF 814683 - 815978 + | glycolate oxidase iron-sulfur subunit TERM 724 816507 - 816471 - g 73 -11.7 -3.17075 | opp_overlap 816471 816474 GCGCCCGCAAGGCAA CAC-CCATCCCGCTGCC GCAGT GG-AGCGGGATGGTGCG TTGAATTGCAAACGT TERM 725 816474 - 816503 + G 81 -15.1 -2.57013 | gap 1, opp_overlap 816471, overlap 816471 CCCGCAAGGCAACAC CCATCCCGCTGCCG CAG TGG-AGCGGGATGG TGCGTTGAATTGCAA Avi_5790 816118 - 816528 + | hypothetical protein Avi_5791 817265 - 816555 - | glutathione S-transferase Avi_5793 817432 - 817878 + | hypothetical protein TERM 726 817981 - 817956 - T 100 -12.5 -4.40003 | opp_overlap 817957, overlap 817957 CGGGATAAATACAAA GGCCCGCCGGA GCGA TCCGACGGGCT TTTTGCTTTGAACGG TERM 727 817957 - 817980 + T 100 -13.8 -4.98531 | opp_overlap 817957 817956 GGGATAAATACAAAG GCCCGCCGGA GCGA TCCGACGGGC TTTTTGCTTTGAACG TERM 728 817980 - 817957 - T 100 -16 -3.23279 | opp_overlap 817957, overlap 817956 GGGATAAATACAAAG GCCCGCCGGA GCGA TCCGACGGGC TTTTTGCTTTGAACG TERM 729 818396 - 818410 + T 77 -2.9 -5.09895 | opp_overlap 818396 TTATTATGATTGAAA TATCA TTATT TGATA TTTTTTCCATAAATA TERM 730 818630 - 818655 + T 76 -7.5 -4.25566 | opp_overlap 818630 TTTTTCCGAAAAAAA GCCCAGCGTCT ATTC AGACCCTGAGC TTTTACGTCATTATT TERM 731 818655 - 818630 - T 100 -9.7 -5.40072 | opp_overlap 818630 TTTTTCCGAAAAAAA GCCCAGCGTCT ATTC AGACCCTGAGC TTTTACGTCATTATT hisG 819415 - 818723 - | ATP phosphoribosyltransferase hisS 820533 - 819415 - | histidyl-tRNA synthetase TERM 732 819547 - 819534 - G 78 -9.5 -4.09685 | opp_overlap 819521 CGCCACCGGCCAAAA CGGCG GTTT CGCCG GAGAGCGCCACTTCA TERM 733 820745 - 820729 - R 72 -8.7 -3.72788 | CTCCAGAATAGAGAA CCTACCA GTT TGGCAGG GAAAAGTGGACCCCG Avi_5796 821210 - 820860 - | hypothetical protein TERM 734 820949 - 820938 - G 71 -7.2 -4.25104 | opp_overlap 820925 820947 CTCCGCGCAGCAAAA GCGG TTTC CCGC AGCCTCACGATGAGG TERM 735 821180 - 821202 + g 70 -2.7 -4.84274 | gap 1, overlap 821182 821198 AGACGGTTGACAGCC GGTCGAA-CC ACGA GGCTTCGAGC TTTTTCATCTCGTTC TERM 736 821408 - 821428 + r 86 -14 -2.88999 | CTCGGCATTTCGTCA CCCTCGGG CTTGT CCCGAGGG TCTGCTGTCTCCGAA Avi_5797 821988 - 821548 - | hypothetical protein TERM 737 822054 - 822015 - H 91 -11.4 -4.09685 | overlap 822019 822020 TCCCACGCTTGAAAA CCAAGCGATCGCCAGAGA ACGG TCTCTGGCGATCGGGGAG GTAGAAAAGCCGCAC TERM 738 822050 - 822019 - H 100 -17.4 -3.67175 | overlap 822015 822020 ACGCTTGAAAACCAA GCGATCGCCAGAGA ACGG TCTCTGGCGATCGG GGAGGTAGAAAAGCC TERM 739 822049 - 822020 - H 100 -20.9 -2.79823 | overlap 822019 822015 CGCTTGAAAACCAAG CGATCGCCAGAGA ACGG TCTCTGGCGATCG GGGAGGTAGAAAAGC TERM 740 822167 - 822201 + H 95 -13.7 -3.51934 | gap 1, opp_overlap 822164, overlap 822165 CATATAGACATAGCC CACCGCCTCAGCCACA AACC TATGGCTGAGG-GGTG TCTTTATAACGACCG TERM 741 823111 - 823099 - H 76 -10.5 -3.35813 | CTGCATGGGAACCAA CCGGC GAG GCCGG CTGGTAAGTGCCTGA TERM 742 823158 - 823177 + G 100 -15 -5.02502 | TATTATGATGTTGCG GCGGTCGG AATT CCGACCGC TTTTTCTATAGTCTG TERM 743 823254 - 823227 - g 73 -12.8 -2.72626 | gap 1, opp_overlap 823212, overlap 823226 823215 GAACAGCCAGACAAG CCAGGGCAGGATC TGC GACCCTGCC-TGG TCAGGCGATCCTTTA TERM 744 823456 - 823466 + G 79 -6.8 -4.56597 | TTCTTCGGTTGGCTT GGAC TCG GTCC TTTTTCGGACCGGAC Avi_5800 823119 - 823568 + | hypothetical protein TERM 745 823652 - 823626 - T 100 -12.4 -4.34402 | overlap 823627 TTCGGCAGAGTAAAA TTTAGAGCATCG GTC CGATGCTCTAAC ATAGTACACGACGCA TERM 746 823651 - 823627 - T 100 -15.9 -3.2032 | overlap 823626 TCGGCAGAGTAAAAT TTAGAGCATCG GTC CGATGCTCTAA CATAGTACACGACGC TERM 747 823700 - 823747 + T 79 -4.9 -5.00196 | gap 3, opp_overlap 823734, overlap 823702 TTTACCCCCTCATCC CCCTGCC-GGGA-C-CTTCTCCCC GCT GGGGAGAAGAGATGCGAGGCAGCG TTTTGTTCTTTCAAC hisS 825620 - 823968 - | histidyl-tRNA synthetase TERM 748 824363 - 824376 + g 70 -3.7 -4.57073 | TCACCTCGTCAGCAC CCAGC TTGC GCAGG TTTTTCAAGGCCGTC TERM 749 825240 - 825252 + g 85 -10.5 -4.4078 | opp_overlap 825228 GAACTGGCGGAAGCG GCCCG GAC CGGGC TTTTCATTGCGGAAC TERM 750 825583 - 825600 + g 78 -4.1 -4.98616 | gap 1, overlap 825585 825586 CCACGCGGCAGGCGG GCTCTCAG TTT CTGGG-GC TTTTTGGTCTTTTCG Avi_5802 825733 - 826497 + | hypothetical protein Avi_5803 826535 - 827644 + | hypothetical protein TERM 751 827741 - 827779 + F 86 -12.5 -3.55444 | gap 1, overlap 827747 CTCTGGCTTATGCTG CCATGCCCGTCAGCGGCA TGGC TGCCACTGGCGG-TATGG TTTCGCCGATGACGA TERM 752 827747 - 827774 + F 83 -13.4 -3.00704 | overlap 827741 CTTATGCTGCCATGC CCGTCAGCGGCA TGGC TGCCACTGGCGG TATGGTTTCGCCGAT TERM 753 828240 - 828221 - g 83 -12.2 -3.82665 | GAGGACACTATGAAA GGCATGGA CCAT TCCATGCC GTCGAATACGACGTC Avi_5806 828146 - 828514 + | hypothetical protein TERM 754 829066 - 829046 - g 70 -2.4 -4.82901 | opp_overlap 829047 829051, overlap 829047 CGTCTCCGATAAAAA CGCCACCA CCTAT CGGCGGCT TTTTTCAAAGCACGG TERM 755 829047 - 829065 + G 76 -3 -5.00616 | opp_overlap 829046 829047, overlap 829051 GTCTCCGATAAAAAC GCCACC ACCTATC GGCGGC TTTTTTCAAAGCACG Avi_5807 828585 - 829286 + | hypothetical protein tag 829922 - 829275 - | 3-methyladenine-DNA glycosylase TERM 756 830751 - 830762 + G 71 -7.2 -4.21607 | CGGAAAATCCATTGG GCGC ACGG GCGC TTTATCTTGGCTCGA Avi_5810 830117 - 830917 + | hypothetical protein Avi_5811 831072 - 831743 + | hypothetical protein Avi_5812 834644 - 831960 - | transcriptional regulator LuxR family TERM 757 832426 - 832447 + g 70 -4.4 -4.50193 | overlap 832435 TCGAGAAGCGCCAGT TCCACGCT GCGAAG ATCGTGGA TTTTCGTTAGTTGCT Avi_5813 835520 - 834786 - | phosphopantetheinyl transferase Avi_5814 836141 - 835584 - | hypothetical protein TERM 758 836778 - 836800 + G 76 -13.4 -2.73771 | overlap 836777 CCCGTTAGTACCGCG CTCGGCGTGC TGG GCATGCCGGG ATTTACCGCCTATGC TERM 759 836988 - 836975 - g 70 -2.4 -4.72272 | overlap 836958 CGCTTTTATCAAAAA CGAA CTCGGT TTCG ATGCGGTGGTCGATC Avi_5815 836406 - 837431 + | quinone oxidoreductase Avi_5816 837926 - 837444 - | acetyltransferase TERM 760 837966 - 837947 - R 100 -10.7 -5.10163 | opp_overlap 837946 837957 AACCTCAAAAGAAAA GCAGGCC ATTTCG GGCCTGC CTGATATGTCGCTGA Avi_5817 838588 - 838010 - | hypothetical protein TERM 761 838848 - 838820 - R 77 -10.3 -3.63991 | overlap 838821 838823 CACCATCCTGAATAA TTATCAGGCGGCA TCT TCCCGCCTGATAG AAAATTCCGGCCAAT TERM 762 838847 - 838821 - R 85 -13.8 -2.78073 | overlap 838820 838823 ACCATCCTGAATAAT TATCAGGCGGCA TCT TCCCGCCTGATA GAAAATTCCGGCCAA TERM 763 838845 - 838823 - R 75 -12 -2.93549 | overlap 838821 838820 CATCCTGAATAATTA TCAGGCGGCA TCT TCCCGCCTGA TAGAAAATTCCGGCC ileS 841888 - 838925 - | isoleucyl-tRNA synthetase TERM 764 841635 - 841613 - G 72 -9.8 -3.74747 | GTAATTGCTATCAAA CCCGCGCATC TGG AATGAGCGGG TGATCACGTCTTTGA TERM 765 841706 - 841720 + g 70 -4.2 -4.56597 | overlap 841707 GGCGTAGGGAGGGCC ATCGTG CAG CACGAA TTTTTCGCGGCCAGC TERM 766 842016 - 841975 - R 100 -16 -4.13282 | gap 3 AGCACACGCCGAAAA CCCGGACCCTCCG-GCTGCTC CTA GAGC-GCGCGGAAGG-CCGGG CCAATAATTCGCCCG TERM 767 842368 - 842328 - R 78 -11.1 -3.52204 | gap 1, opp_overlap 842355, overlap 842331 GCACCGTCAAACGAA GCACCACCAGCGAGTCGG TAGAAG CCGCCGCGCTGGTGG-AC AATCTCACGCCCGCG TERM 768 842366 - 842331 - R 100 -16.1 -2.89569 | opp_overlap 842355, overlap 842328 CCGTCAAACGAAGCA CCACCAGCGAGTCGG TAGAAG CCGCCGCGCTGGTGG ACAATCTCACGCCCG Avi_5820 843848 - 842373 - | monocarboxylic acid permease Avi_5821 844035 - 843838 - | hypothetical protein Avi_5822 844437 - 844168 - | hypothetical protein TERM 769 844489 - 844459 - R 77 -12.8 -2.76322 | opp_overlap 844459 844465, overlap 844461 844464 TGACTGAAGAGATTA TACAAGGAGTCATT GAA AATGACTCTTTGTA TTCCTTTTGAAAATA TERM 770 844459 - 844489 + r 100 -15 -3.67622 | opp_overlap 844459 844461 844464, overlap 844465 TGACTGAAGAGATTA TACAAGGAGTCATT GAA AATGACTCTTTGTA TTCCTTTTGAAAATA TERM 771 844487 - 844461 - R 71 -11 -2.92442 | opp_overlap 844459 844465, overlap 844459 844464 ACTGAAGAGATTATA CAAGGAGTCATT GAA AATGACTCTTTG TATTCCTTTTGAAAA TERM 772 844465 - 844483 + r 90 -10.4 -4.3341 | opp_overlap 844464 844461 844459, overlap 844459 AAGAGATTATACAAG GAGTCATT GAA AATGACTC TTTGTATTCCTTTTG TERM 773 844496 - 844538 + r 84 -7.4 -4.62069 | CTCTTTGTATTCCTT TTGAAAATATCTCAAG CCTCTGACGCA TTTGAGATATTTTCAA TTTTTCAAGTCGAGG dapA 845492 - 844581 - | dihydrodipicolinate synthase Avi_5824 845925 - 845515 - | hypothetical protein ribF 847266 - 846286 - | riboflavin biosynthesis protein RibF TERM 774 847144 - 847100 - G 78 -9.9 -4.08216 | opp_overlap 847107 847109 847143, overlap 847104 847110 GGATGCGGCTCAAAA GTCAGAACCAGTGCGGGAACG CCG CGTTGCCGCGCCAGTTCCAGC GCGCGTTCTAGCACG TERM 775 847140 - 847104 - G 76 -13.7 -2.74605 | opp_overlap 847107 847109, overlap 847100 847110 GCGGCTCAAAAGTCA GAACCAGTGCGGGAACG CCG CGTTGCCGCGCCAGTTC CAGCGCGCGTTCTAG TERM 776 847232 - 847206 - G 75 -10 -3.65522 | opp_overlap 847203 TACCGATGGCAACAA CGCCGCCCTTCA GGC TGTCGGGCAGCG GGGTCTTCTTTTCAT Avi_5827 848130 - 847279 - | hypothetical protein Avi_5828 849628 - 848237 - | chromate transport protein chrA TERM 777 849701 - 849728 + H 75 -12 -2.96695 | gap 1, opp_overlap 849700 849699 849697, overlap 849699 849703 AGTGCTAACAATATC CATGCG-GGGCCG TTT CGGCCCGCGAATG TCATTTGATCGAGGG groES 849752 - 850048 + | 10 KD chaperonin (protein CPN10) TERM 778 851124 - 851102 - g 82 -8.4 -4.46615 | overlap 851105 CATCACCAAGGAAAA CACCACCATC GTT GATGGCGCTG GTCAGAAGTCCGACA groEL 850116 - 851759 + | chaperonin TERM 779 851812 - 851831 + F 100 -15 -4.49756 | TTCAGACTCTCTGAA GGGCGGCT TTAA AGCCGCCC TTTTGCTGTTTAAAA Avi_5832 852346 - 852762 + | hypothetical protein TERM 780 852946 - 852965 + F 77 -11.4 -3.1855 | overlap 852958 TGGCCTGAATTGGCA CCCTACCC GAAC GGGTGGGG TTGGGTCTTGCAACC TERM 781 853317 - 853333 + G 72 -5.1 -4.63218 | overlap 853291 CCGTTTCGGGGCGGA TATGGCC GAT GGCGATA TTTTGTTGACCAACG hyuB 853063 - 854754 + | hydantoin utilization protein TERM 782 855877 - 855891 + G 82 -6.4 -4.72986 | CGCTAACAGATGCAT TGCTGA CGC TCGGCA TTTTTGATCCCGCTA hyuA 854751 - 856814 + | hydantoin utilization protein TERM 783 857462 - 857478 + G 89 -6.5 -5.14563 | opp_overlap 857458 GCAGGATCGAACAGC TTGGCCG GCC CGACCAA TTTTTTCATGCGCCC TERM 784 857793 - 857822 + G 83 -13.7 -3.57144 | gap 1 AGACGGGCAGACCTT GACGGCG-ATCTGT GAT GCAGATGCGCCGTC TTTGACCGTCGGGCA potG 856816 - 857910 + | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 785 858188 - 858169 - g 87 -9.3 -4.59109 | GATATCGGTGAAAAA TGGGTGG AATTTG CCACCCA AAATGGTGTAAAGCC Avi_5836 857977 - 859155 + | ABC transporter substrate binding protein (spermidine/putrescine) TERM 786 859212 - 859269 + F 84 -7.4 -4.68919 | gap 3, opp_overlap 859218 859220, overlap 859213 859219 TCTGTGGTTTTGGGG CA--TAAATACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG-ATTCGCTTG TTTTCGTTTGTCTTT TERM 787 859213 - 859266 + F 100 -12.7 -4.40882 | gap 1, opp_overlap 859218 859220, overlap 859212 859219 CTGTGGTTTTGGGGC ATAAATACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG-ATTCGC TTGTTTTCGTTTGTC TERM 788 859261 - 859218 - f 100 -19.2 -3.85698 | gap 1, opp_overlap 859213 859212 859219, overlap 859220 GTTTTGGGGCATAAA TACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG-A TTCGCTTGTTTTCGT TERM 789 859219 - 859261 + F 100 -20.8 -3.38158 | opp_overlap 859218 859220, overlap 859213 859212 TTTTGGGGCATAAAT ACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAGA TTCGCTTGTTTTCGT TERM 790 859260 - 859220 - f 100 -24.3 -3.51934 | opp_overlap 859219 859213 859212, overlap 859218 TTTGGGGCATAAATA CTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG ATTCGCTTGTTTTCG TERM 791 859331 - 859359 + F 72 -10.9 -2.99473 | opp_overlap 859330 859326 859327 AAACTCTAAAGCCAG CCTATCGCCGTGT TTC GCCCGGCGACAGG TCTCTGATGATTTGA Avi_5839 859454 - 860320 + | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 792 860569 - 860530 - g 70 -12.3 -2.70932 | opp_overlap 860523 860534 860559 860560, overlap 860557 GCCCTTTGGCAATCA GCCAGCGTTGC-CCTGTTG ACGG CAACAGGCGCCACGCT-GC TATCGCTTATGGCGG TERM 793 860534 - 860566 + G 71 -12.8 -2.67705 | gap 1, opp_overlap 860530 860557, overlap 860523 860559 860560 TTTGGCAATCAGCCA GCGTTGC-CCTGTTG ACGG CAACAGGCGCCACGC TGCTATCGCTTATGG potI 860317 - 861114 + | ABC transporter membrane spanning protein (putrescine) metF 862011 - 861121 - | methylenetetrahydrofolate reductase TERM 794 862350 - 862335 - g 75 -10.4 -3.741 | opp_overlap 862308, overlap 862312 862333 CCAATATGGAAAAGA TCGCGC TTCT GCGCGA GACCTCCGGTGCCAA TERM 795 862674 - 862684 + G 74 -8.2 -4.11484 | overlap 862661 TTGACCTAGCCGATC CGGC CCG GCCG TTTTCGCGGCTTGGG TERM 796 862849 - 862823 - g 71 -10.8 -3.61654 | GACATCGAGGCGAAA TTCGGCTCGCTG CTG CATCGTGCCGAA TGGGTCAGCCTCGGT nspC 862274 - 863371 + | carboxynorspermidine decarboxylase TERM 797 863374 - 863361 - f 76 -8.1 -4.16842 | opp_overlap 863361 CGGACTTTGAACAAA GCCTC TCTT GAGGC TTCTGACGATTGGAC TERM 798 864587 - 864539 - g 75 -5.9 -4.65916 | opp_overlap 864557 864558, overlap 864541 GGGACGTGAAGAAAA TGGCCAATGTCGAGGAACTGCCG CCA CGGCCTTTCCTCAACATCCTCAA CCATATCGGCCTGCC Avi_5844 863410 - 864651 + | hypothetical protein Avi_5845 866456 - 864720 - | biotin carboxylase Avi_5847 868102 - 866477 - | hypothetical protein TERM 799 866678 - 866695 + g 79 -12.7 -3.18199 | overlap 866658 ATGCGGCACCTGAAT GGCACCG GTGG CGGTGCC TTCGCTTGGCAGTTC Avi_5849 868916 - 868110 - | hypothetical protein TERM 800 869035 - 868990 - R 95 -7.1 -5.45802 | gap 1, overlap 869027 TGCGTAAAACAAAAA CTTAAAGCGTGTTGCTTG AGGCTGATAAG CC-GCAACACGCTTTAAG CAGTTACAAATGGCT Avi_5851 869795 - 869031 - | hypothetical protein Avi_5852 871107 - 869830 - | hypothetical protein TERM 801 871191 - 871201 + H 76 -4 -4.96388 | opp_overlap 871191 ACAATTCCGTCAATA TTGT TGA ACAA TTTTATTTGATCGTT TERM 802 871466 - 871445 - g 81 -4.3 -5.07486 | overlap 871446 GACTGGTAACAAAAA TCCGCGATC AACT GATCGCCGG GGAGTTGAAGCCGGG Avi_5853 871393 - 872058 + | transcriptional regulator GntR family putR 872523 - 872059 - | transcriptional regulator AsnC family TERM 803 872454 - 872467 + g 76 -4.5 -4.82901 | overlap 872455 CGGCCAGTTCGGCAT TGGTC AGAC GACCG TTTTTCTGCAACAGG Avi_5856 872686 - 873699 + | 1-aminocyclopropane-1-carboxylate deaminase TERM 804 873735 - 873717 - T 81 -13.1 -2.65264 | opp_overlap 873708, overlap 873702 CCATCAGGTAGACGA CCGGCCC GAAAA GGGCCGG TCCGTAAACATGTTA Avi_5857 874230 - 873748 - | hypothetical protein Avi_5858 875441 - 874503 - | acetyltransferase TERM 805 876378 - 876406 + G 85 -10.2 -4.38712 | overlap 876363 GCGGCGTTGCTGGCT GCGCTCGAGAGC GGCCA GCTCGCCAGCGC TTTTCTCGACGTCAC Avi_5861 875679 - 876602 + | 2-hydroxyacid dehydrogenase TERM 806 876739 - 876717 - g 75 -9.8 -3.84017 | opp_overlap 876717 TAATCTCAAAGACAA GACCTTGCTG CGC CAGCAGGGCC TGATTGGCGGCGAAT attK2 876697 - 878154 + | succinate semialdehyde dehydrogenase Avi_5863 879084 - 878185 - | Transcriptional regulator Avi_5865 879364 - 880140 + | hypothetical protein Avi_5866 880153 - 880395 + | Biotin carboxyl carrier protein accC 880392 - 881780 + | acetyl-CoA carboxylase biotin carboxylase Avi_5869 881780 - 882655 + | Allophanate hydrolase subunit 1 TERM 807 883161 - 883195 + G 79 -13.6 -3.10245 | gap 1 GCGCTGCGCCGCCGT CCGGGCG-CACCTGC CGAACT GCGGGTGTTGCCCGG TCTCTATTGGGATCG Avi_5870 882645 - 883622 + | hypothetical protein Avi_5871 884653 - 883655 - | transcriptional regulator GntR family TERM 808 885822 - 885859 + G 71 -12 -2.88544 | GGTTCTGGTGCTGGA TCGTGGGCGGACTGCC CAGACC GGCAGTTCGGACACGA TCTATAACCGTCCCA TERM 809 886098 - 886125 + G 70 -2.7 -4.83169 | opp_overlap 886102, overlap 886099 CAGCTTTCTGGCTGA GGAATATACCG GTTCGG CGGTCTATTCG TTTTTCTCGGCCGAT Avi_5873 885184 - 886257 + | ABC transporter nucleotide binding/ATPase protein Avi_5874 886250 - 887149 + | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 810 887888 - 887906 + G 78 -8.1 -4.41494 | GAATGTCTTTGCCTT CGGCGTG CTGAC CACGCTG TTTTCCTTCGCGCTG Avi_5876 887151 - 887996 + | ABC transporter membrane spanning protein (spermidine/putrescine) Avi_5877 887993 - 888742 + | short chain fatty acid oxidoreductase Avi_5878 888762 - 889529 + | dehydrogenase TERM 811 889567 - 889555 - g 100 -10.5 -5.3798 | overlap 889563 CAACAACAACAAAAA CCGGC AAA GCCGG ATCGGGAACTCAAAA TERM 812 889812 - 889795 - g 74 -8.3 -4.19336 | AATGACTTCAAGAAA GCCTCCG GCGT CGGTGGC ACATCCGGCACGGCG Avi_5880 889516 - 890829 + | ABC transporter substrate binding protein (spermidine/putrescine) TERM 813 890877 - 890897 + F 85 -14 -2.78384 | GTTCACCCACCGTCA CCCTCGGG CTTGT CCCGAGGG TCTACTGCCGAGGGC Avi_5881 891039 - 892148 + | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) Avi_5882 892196 - 893077 + | polysaccharide deacetylase family protein TERM 814 893369 - 893344 - g 74 -11.2 -3.60296 | opp_overlap 893343 893346 893364 CAGCCTGACGGGAAA GACCGAGATC ATCGAG GATCTCGGCC ATCTCTGGTCGGTTG Avi_5883 893132 - 893464 + | hypothetical protein Avi_5884 893457 - 894473 + | hypothetical protein Avi_5885 894547 - 895764 + | ABC transporter substrate binding protein (spermidine/putrescine) gatA 895787 - 897166 + | glutamyl-tRNA amidotransferase subunit A lrp 897649 - 897173 - | transcriptional regulator AsnC family TERM 815 897347 - 897379 + g 83 -7.7 -4.56597 | opp_overlap 897355, overlap 897349 GTAATCATAGCCGCC GGAGACCAGGTGA CATTCGA TCACCTGGTCAAC TTTTTCAACCGCGGC Avi_5888 897873 - 899210 + | oxidoreductase TERM 816 900411 - 900426 + G 74 -6.8 -4.26344 | GGCGATCATGATCAT GGTGTC GATT GGCACC TTTTCATGGCGGTCT Avi_5890 899428 - 900909 + | sulfate permease TERM 817 901119 - 901158 + T 100 -19.5 -4.62904 | opp_overlap 901125, overlap 901125 TCGTTCGGTTCTTTT CGAAAAGCCTGCCGC ACCTCCTCCC GCGGCAGGCTTTTCG TTTTTGGAGGTGTTT TERM 818 901152 - 901125 - T 91 -12 -4.07568 | opp_overlap 901119 901125 GGTTCTTTTCGAAAA GCCTGCCGCA CCTCCTCC CGCGGCAGGC TTTTCGTTTTTGGAG TERM 819 901125 - 901152 + T 100 -11.3 -4.77757 | opp_overlap 901125, overlap 901119 GGTTCTTTTCGAAAA GCCTGCCGC ACCTCCTCCC GCGGCAGGC TTTTCGTTTTTGGAG cysG 902659 - 901178 - | siroheme synthase TERM 820 901947 - 901964 + gT 74 -9.8 -3.54424 | CCGACCAGTGTGACC CGCCCC AGTGCC GGGGCG TTTGCGAGCCTGGCG nasA 905288 - 902631 - | nitrate reductase large subunit TERM 821 902997 - 902973 - GR 79 -4.3 -5.00616 | gap 1 GCCTGCGTCAAAAAA TGCCAGCCGG ACATCG CCA-CTGGCA TGGTCGCTATAGCCG TERM 822 903880 - 903899 + gr 71 -9.2 -3.55761 | TGCCACCAGTCTGCC CTGGCCTC GCCG GGGGCCGG TTTGAAGGCTCGCTG TERM 823 904493 - 904470 - GR 70 -3.8 -4.62904 | gap 1, opp_overlap 904485, overlap 904458 AAACAGCTGGAAAAA CTGC-CGCAAC TGC ATGGCGGGCAG GCCGGTCTTCTCCAT TERM 824 904724 - 904740 + gr 74 -7.9 -4.07885 | TCACCACCACTTTCA GGCCGGG GCG CTTGGCC TTTTCCGCAGCAATC TERM 825 905304 - 905316 + r 73 -9.1 -3.67792 | overlap 905314 GATGCTCACTCCGCC GCCTG CAA CAGGC TTTCCGTGGCTATGG nirD 905629 - 905294 - | nitrite reductase small subunit TERM 826 905563 - 905589 + g 70 -12.2 -2.82015 | TGCCCTGAGGAGTTT TTACGCAGCGCG CGC CGCGCAGCGGAA TGTCGTCGATATGGC TERM 827 905644 - 905685 + r 71 -9.5 -3.50853 | gap 1 TGATCTCACTCCGCT GCCTGGGTGTAA-CCGATGG TCG CCATCGGCTTGAACTCATGC TTGTCCTTGCCGGAG nirB 908081 - 905634 - | nitrite reductase large subunit TERM 828 907658 - 907672 + g 86 -5.7 -5.03715 | CCCGGCCCTGGCCCT TGCTG ATCTC CAGCA TTTTTTCGACATCAT nrtC 908890 - 908087 - | ABC transporter nucleotide binding/ATPase protein (nitrate) nrtB 909792 - 908899 - | nitrate ABC transporter permease protein nrtA 911114 - 909816 - | ABC transporter substrate binding protein (nitrate) TERM 829 910642 - 910666 + g 71 -7.7 -3.98172 | overlap 910646 AAGGCGTCCTTCAGC TTGGCGGCGTC AAG GGCGACGCCGG TTTCTGCATATTCCT TERM 830 911214 - 911160 - R 100 -12.3 -5.91981 | gap 1, overlap 911205 AAAACGCAAAAAAAA CGCCGCGAAGATTCCTGCGCGGAC CGGGAGGT GTCCGCTCAAAAACCTT-GCGACG TCGATGTCTCAGGGA TERM 831 911246 - 911232 - R 85 -11.4 -3.6502 | opp_overlap 911230 911232 GATGTCTCAGGGAAA GCGCAG CGT CTGCGC TATTTCGCGTTGGTC TERM 832 911232 - 911246 + r 80 -11.4 -3.41936 | opp_overlap 911232, overlap 911230 GATGTCTCAGGGAAA GCGCAG CGT CTGCGC TATTTCGCGTTGGTC nrtC 912795 - 911524 - | ABC transporter nucleotide binding/ATPase protein (nitrate) TERM 833 912411 - 912374 - G 80 -14.1 -2.78463 | gap 1, opp_overlap 912381 ATGGTCTCCAGCACA CGGGCCAGCGC-CCGGAC ATT GTCCAGCGCGCTTGCCTG CGCTGCAACCAACCC nasT 913395 - 912808 - | two component response regulator TERM 834 914228 - 914243 + G 70 -4.6 -4.54047 | AGATGTCGGCAATGT CTGGAG TGGA CGCCAG TTTTGTCTCCGCTGA Avi_5902 913864 - 914589 + | hypothetical protein Avi_5904 915595 - 914636 - | hypothetical protein Avi_5905 915835 - 916485 + | hypothetical protein Avi_5907 917410 - 916493 - | transcriptional regulator LysR family TERM 835 916575 - 916550 - G 93 -12.5 -4.11692 | opp_overlap 916548 916550 CAGCCATTGTGAAAA GGCCGCCAGCG GCTT CGATAGCGGCC TGTTGTCGGGTGATA gcdH 917559 - 918734 + | glutaryl-CoA dehydrogenase TERM 836 919846 - 919826 - g 71 -12.5 -2.62983 | CCGAGCTTGAGACGA CGAGGCGCG CAC CGCGCCTGG GAGAGCATACGGCTG caiB 918745 - 919896 + | L-carnitine dehydratase TERM 837 920044 - 920054 + G 83 -8.2 -4.56597 | overlap 920042 920040 GCTGTCGCTCAGCCT CGCC TCG GGCG TTTTTGCACAGGAGC Avi_5910 920003 - 920491 + | hypothetical protein TERM 838 920529 - 920571 + F 75 -11.6 -3.06696 | gap 1, opp_overlap 920536, overlap 920536 CTGATCATATTCCTT TTGCAAATCTCTCAA-GCC CCGGCT GCCTTTGAGAGATTTGCAA TGTCTTCAAGGCGAG TERM 839 921466 - 921505 + G 73 -11.4 -3.3334 | GCTGCTTTGGCGGCC TTGCCCGCACTGGTGCTG CGCT CAGCAATGGTTCGGGCGA TTATGCACTGGCCTT Avi_5913 920703 - 921752 + | aminopeptidase dat 921780 - 922646 + | D-alanine aminotransferase Avi_5915 924473 - 922965 - | penicillin binding protein Avi_5916 924721 - 925755 + | dipeptidase TERM 840 926618 - 926669 + G 83 -5 -5.14965 | gap 1, opp_overlap 926630 926634 926637, overlap 926644 926645 TGGGCCGCGCCATCA TCCCGGCCAAT-ATCAACCACCCGG AAG CCGAGCCGATGATTATCGGCCGGAA TTTTTTGGTGAAGAT thiC 926047 - 927879 + | thiamine biosynthesis protein ThiC thiO 927881 - 928873 + | glycine oxidase ThiO thiS 928870 - 929067 + | thiamine biosynthesis protein ThiS thiG 929069 - 929842 + | thiamin biosynthesis ThiG Avi_5922 929839 - 930450 + | thiamine-phosphate pyrophosphorylase protein TERM 841 931574 - 931554 - f 74 -9.7 -3.5594 | opp_overlap 931553 931550, overlap 931545 AAGTCAGGGGTGAAA TCCCGCAGC TCA ACTGCGGAA CTGCCTTTGATACTG TERM 842 931951 - 931964 + F 82 -8.1 -4.54727 | overlap 931944 GACATCCTGTGACCG CCACG GAGA CGTGG TTTTCCTTTCGGGGA TERM 843 932508 - 932521 + F 72 -5.3 -4.57882 | GACTCCTTTTTAAGT GGTTT TGGC AAACC TTTCTTGTTCTTACG TERM 844 933256 - 933279 + F 76 -11 -3.29161 | opp_overlap 933254, overlap 933254 933257 933275 AGAAAAAATAAGGTT TGCACCGTTC TTAT GAACGGTGCC TGTTCTGGTACATTG TERM 845 933257 - 933278 + F 90 -14.5 -2.57014 | opp_overlap 933254, overlap 933256 933254 933275 GAAAAAATAAGGTTT GCACCGTTC TTAT GAACGGTGC CTGTTCTGGTACATT TERM 846 933453 - 933469 + F 70 -10.9 -2.81464 | overlap 933455 GGATCGTTCGTTGTT CATCGTC TTT GACGATG TCTGATGAATGATCA TERM 847 934053 - 934040 - f 80 -5.2 -4.88163 | TGAAGACAAAACAAA CCCC GAGTGT GGGG CGATAGGGTTCGGCA TERM 848 935237 - 935221 - f 81 -9.4 -4.08546 | ATGAGTAACGATAAA GGGGGT GAGAG ACCCCC TCGCCGAAAGACCAA TERM 849 935625 - 935612 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 850 936716 - 936741 + F 77 -11.3 -3.25204 | gap 1, overlap 936714 936713 936716 CGTTCTCATTGACCA TG-CTCATCGAC TTC GTCGATGAGCCA TCTGTTTAGCGCTCA TERM 851 936716 - 936740 + F 81 -12.9 -2.54801 | overlap 936716 936714 936713 CGTTCTCATTGACCA TGCTCATCGAC TTC GTCGATGAGCC ATCTGTTTAGCGCTC TERM 852 936904 - 936892 - f 100 -10.5 -4.97957 | overlap 936894 CACACAATAAGAAAA CGGGC AAT GCCCG CCAGCTTCTCATCAA TERM 853 937113 - 937101 - f 71 -9.1 -3.51934 | overlap 937099 CTTCTCTCATAAACA TCGGC CCC GCCGA AAACATAAAGGGTCG TERM 854 937123 - 937140 + F 91 -12.7 -3.73068 | opp_overlap 937123 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 855 937140 - 937123 - f 100 -12.7 -4.45168 | opp_overlap 937123 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 856 937285 - 937261 - f 95 -14.3 -3.30854 | opp_overlap 937261 AATAACTTACATCAA TCCCGCAGCCT TAA ACGCTGCGGGA TTTTTGCGTTTGGGG TERM 857 937261 - 937285 + F 100 -14.3 -4.81249 | opp_overlap 937261 AATAACTTACATCAA TCCCGCAGCCT TAA ACGCTGCGGGA TTTTTGCGTTTGGGG TERM 858 937486 - 937513 + F 73 -11.4 -2.72661 | overlap 937487 ACCATCAGTCATCTG TGTCTAGAAGGC TTAT GTCTTCTGGACA TAATTAAGGATGATG TERM 859 938127 - 938078 - g 74 -13.8 -2.62024 | gap 2, overlap 938075 938074 938085 GATGACGAGAAGGCA TGGACAATGATCTCCG--GCCACG TCCG CGCGGCGTCAGAGATCATTGGCCA TAAGCTGACCGTGTT TERM 860 938466 - 938491 + G 73 -11.9 -3.12668 | opp_overlap 938459 938484 CCGATACAGCGCTTG GTCTTTCGCCG CTAA CGACGAAAGAC TATTCCGATTTGGCA Avi_5923 937523 - 939031 + | pyruvate kinase TERM 861 939064 - 939097 + T 72 -10.9 -3.1207 | overlap 939062 CCATCATCTTGGGGA CTTGCCCCTCCCAGC AATA GCGAAGAGGGGCAAG TGTATTCCAATTTAC exoP 941474 - 939138 - | exopolysaccharide polymerization/transport protein TERM 862 939892 - 939905 + g 70 -3.7 -4.56597 | overlap 939874 CCAGGAACGACTGTC GCTCC CTTA GGCGC TTTTTGACGCCAACG exoO 943110 - 942115 - | succinoglycan biosynthesis glycosyltransferase exoM 944039 - 943107 - | succinoglycan biosynthesis protein exoA 945061 - 944036 - | succinoglycan biosynthesis protein exoL 946295 - 945051 - | succinoglycan biosynthesis protein TERM 863 946397 - 946376 - R 93 -13.1 -3.64703 | opp_overlap 946381 GCGTCTTCATGGAAA GGTAAGCCA CCCA TGGCTTACC TCGCCCCCTGTCGTG exoK 947331 - 946525 - | endo-1,3-1,4-beta-glycanase TERM 864 946800 - 946823 + g 100 -9.6 -5.26875 | gap 1 CGTTGAAGCCCTTGT TGGC-GCCGTT ATC GACGGCAGCCA TTTTTTCATTGCCAC TERM 865 946963 - 946952 - G 81 -3.6 -5.1361 | ATAAAGGTGAAAAAA GCCG AATT CAGC CCGGACGCATCGGCG exoH 948409 - 947333 - | succinoglycan biosynthesis protein TERM 866 947457 - 947432 - G 74 -7.6 -4.10161 | gap 1, overlap 947433 CATGACCCCGTAAAA TCCCGGCG-TC AGCCG GATCGCCAGGA AATGGGAGGCAAGCA TERM 867 948717 - 948734 + r 100 -4.1 -5.64274 | overlap 948720 GTAAAGCTATGTATC TATTCGC GTCT GCGACTA TTTTTTTGTCCATAG exoT 950334 - 948856 - | succinoglycan biosynthesis transport protein TERM 868 949412 - 949398 - G 71 -11.4 -3.21378 | overlap 949392 949396 CAAACAGCACCAACA TGGCCG GCT CGGCCA ATGCCCACATGCCGA TERM 869 950503 - 950485 - H 75 -11.8 -3.09834 | opp_overlap 950484 950487, overlap 950487 GATTGCATCATGGAA TATGGTGC AAG GCACCATA GTCTGATAGCGCAAG TERM 870 951417 - 951395 - g 86 -8.5 -4.57073 | gap 1 GACCGCTCGTAAAAA TGCCC-TCTG GGGT CAGATGGGCA TGGTAAAACGCCGTA exoW 950571 - 951530 + | succinoglycan biosynthesis protein exoV 951604 - 952569 + | succinoglycan biosynthesis protein TERM 871 952589 - 952617 + T 100 -12.5 -5.04601 | opp_overlap 952589 952588 GCAGGTGTATGAAAG TCTGTCCGGTTTA CTC TGAGCCGGGCAGA TTTTTCATTTATGCG exoU 953713 - 952697 - | succinoglycan biosynthesis glycosyltransferase TERM 872 953645 - 953669 + g 83 -7.7 -4.57073 | opp_overlap 953637 953641 953640 953644 CAAGGCAGAACGCAC CGCCCGTGCCA CAG TGGCGCTAGCG TTTTTGGCGGCAATA TERM 873 953739 - 953753 + r 74 -8.5 -3.96148 | CGTACTCTAATCTGA CGCGC AGGTA GCGCG TTTCTGATAAGAACA exoX 954261 - 953986 - | exopolysaccharide production repressor protein TERM 874 954919 - 954933 + H 70 -5.6 -4.37092 | overlap 954917 CTAATTGCTATCATT CCATCC TCT GGAAGG TTTTCTGCAAAGGGT TERM 875 955067 - 955080 + G 83 -5.2 -5.00616 | opp_overlap 955067 AGTCCGCGACAAGAT CGGC CAGTTC GCCG TTTTTTACGACCGCC TERM 876 955148 - 955168 + G 72 -9.7 -3.65812 | overlap 955158 GAGGGTTTGATATTT TCATCGCCA CCA TGGCGCTGA TTATGTTCAGCCCGA TERM 877 955411 - 955389 - g 80 -9.8 -4.14392 | opp_overlap 955389 955388 CCGTAAGCTGCAAAA CGATCCCCGC GTC ACGGCGATCG GTTCTGTGCTGCGTA exoY 955048 - 955725 + | structural protein exoF 955822 - 957102 + | exopolysaccharide production protein TERM 878 957202 - 957220 + G 100 -14.6 -3.93061 | overlap 957195 TTCGTTTTTGCCTAT TCTGCCCG TTT CGGGCAGA TTTCCATTTTGGCCT TERM 879 957654 - 957671 + G 72 -9.1 -3.84712 | gap 1, opp_overlap 957638 957637 CAGCATATGGATGCT GCC-GCCC GCT GGGCTGGC TTTGCTATCAGCTTA TERM 880 958040 - 958050 + G 74 -8.2 -4.20136 | AGTTCTACATCCCAA CCCG GGC CGGG TTTCATTTTCACAAT exoQ 957109 - 958386 + | exopolysaccharide production protein TERM 881 958410 - 958391 - f 95 -9.3 -5.1615 | opp_overlap 958394 GCAATATCTAAAAAA CAACGGC GCTGTA GCCGTTG TAAAAGAAGCGCTAC TERM 882 958921 - 958935 + G 86 -5.6 -5.15969 | AATGCATGCAGTCGT GGAACC TTA GGTGCC TTTTTTCACTTCAGG Avi_5941 958911 - 959270 + | hypothetical protein TERM 883 959442 - 959428 - g 75 -4.2 -4.72272 | CGTGCCCAGGAAAAA CTGGTG AAG CAGCAG GAAGGGCAGCAGGCG Avi_5942 959302 - 959598 + | hypothetical protein Avi_5943 960300 - 959653 - | hypothetical protein TERM 884 960392 - 960418 + r 100 -14.4 -4.43859 | overlap 960344 960373 960393 TTGCGACATTGTTTT GGCGGCGCGTTT CGC AAGCGCGCCGCA TTTTGTAGCATTCTG TERM 885 960393 - 960417 + r 100 -17.9 -3.25592 | overlap 960344 960373 960392 TGCGACATTGTTTTG GCGGCGCGTTT CGC AAGCGCGCCGC ATTTTGTAGCATTCT Avi_5945 961388 - 960435 - | dioxygenase TERM 886 960529 - 960541 + g 72 -9.1 -3.89881 | overlap 960537 TTCGGCAGCTTCAAG GCCTG ACC CAGGC TTTCTGCCGGTTCAT TERM 887 961623 - 961608 - H 78 -7.6 -4.30719 | TTGCGTTATAAGAAA CCAGAA TGCA TTCTGG AAATAAACGCGGAGG Avi_5946 961645 - 962583 + | transcriptional regulator LysR family pssN 962799 - 964019 + | exopolysaccharide export protein TERM 888 964106 - 964118 + T 72 -4.8 -4.62069 | AAGTTCTATAGGATT GCTC TTGGT GAGC TTTTTCGGGTAGCAG Avi_5949 964841 - 964089 - | transcriptional regulator TetR family TERM 889 964158 - 964170 + g 84 -6.9 -4.76041 | opp_overlap 964156, overlap 964147 964156 CTGGCGCAGGACATC GCCGT CCG GCGGC TTTTTCCTGCGTGTC TERM 890 964224 - 964235 + g 72 -5.8 -4.431 | TGCAGGGGCTTTCGG TCGC CGCC GCGA TTTTGTCGGTCCATA Avi_5950 964941 - 966407 + | crocetin dialdehyde TERM 891 966463 - 966424 - f 100 -15.8 -3.90112 | overlap 966427 GTCGCCTGAAGGAAA GTATCGGGCTGAAAGCCG GGAA CGATTTTCAGCCCGATGC ACGGATAGCAAGGCG TERM 892 966460 - 966427 - f 100 -16.1 -3.02166 | overlap 966424 GCCTGAAGGAAAGTA TCGGGCTGAAAGCCG GGAA CGATTTTCAGCCCGA TGCACGGATAGCAAG TERM 893 966740 - 966730 - g 88 -5.4 -5.28176 | CCCAGCGACAAAAAA CACA ACA TGTG GTGATGTAAACCGGT TERM 894 967083 - 967094 + G 70 -3.6 -4.63486 | TCTTTCGCCACTTCC GCTC CTAT GGGC TTTTATTGGCCGGCT Avi_5952 966710 - 968581 + | membrane protein vdh 968604 - 970085 + | vanillin: NAD oxidoreductase Avi_5954 970836 - 970177 - | transcriptional regulator TetR family Avi_5955 971513 - 970941 - | hypothetical protein TERM 895 971087 - 971107 + g 79 -12.7 -3.45849 | opp_overlap 971078 971100 CAATGACAGTGGCGT CACTGTTGA AAA TCAACAGTG TTGTGGTCATCTGGC TERM 896 971177 - 971167 - G 71 -8.2 -4.07687 | ATGGTGTGGCGAAAA CGGC CGC GCCG GGACATGATATTGAG hutU 973188 - 971515 - | urocanase hutG 973997 - 973191 - | N-formylglutamate amidohydrolase hutH 975536 - 973998 - | histidine ammonia-lyase TERM 897 974398 - 974414 + g 74 -2.2 -5.00616 | TCGGCAATCATCAGG CCGG AATTGAGGC CCGG TTTTTTCGCCAAAAA TERM 898 974478 - 974468 - G 74 -8.2 -4.25104 | TCGGGTCCACCAAAA GCGC AAT GCGC CGCTGGGCAATGGCC TERM 899 975022 - 975032 + g 79 -6.8 -4.60487 | CGTTCCAGCGCAATC CTGC CCG GCAG TTTTTCGCCCTGATA hutI 976772 - 975552 - | imidazolonepropionase TERM 900 975929 - 975900 - G 90 -10.7 -4.62475 | gap 1, opp_overlap 975911 ACGGATAAAGTAAAA GGCACC-CGGCAGC AGC ACCGCCACGGTGCC AGCTTTGGCCATGGC Avi_5960 976882 - 978231 + | hydrolase Avi_5962 979819 - 978458 - | nitrilotriacetate monooxygenase TERM 901 978702 - 978726 + g 74 -7.1 -4.38712 | overlap 978705 GCGATCTCAGTGGGG GTGCCGGTGAT GCC ATTGCCGGTGC TTTTCTCGGCGTAGA TERM 902 979672 - 979686 + g 75 -5.6 -4.59853 | opp_overlap 979664 ACATGAAGTCGAATT TCGCCG CTT CGGAGA TTTTTGCCACGTTCA Avi_5963 980589 - 979840 - | transcriptional regulator GntR family Avi_5964 981377 - 980586 - | ABC transporter nucleotide binding/ATPase protein Avi_5965 982042 - 981374 - | ABC transporter membrane spanning protein (amino acid) Avi_5966 982680 - 982039 - | ABC transporter membrane spanning protein (amino acid) Avi_5967 983794 - 982967 - | ABC-type amino acid transport/signal transduction periplasmic protein TERM 903 983008 - 983020 + g 73 -3.4 -4.75404 | CAGGCGTATCAAACT TGGT GCCAA ACCA TTTTTCCTGCAATTT frcK 984639 - 984004 - | pantothenate kinase TERM 904 984573 - 984605 + g 81 -11.9 -3.72576 | opp_overlap 984578, overlap 984576 CGGCAATGGCGATCA TGAAACGGCTGGCCC CTT GGGCCAGCCGCGTGA TTTCCTCAAGAAGGG TERM 905 984576 - 984602 + g 77 -13.6 -2.96695 | opp_overlap 984578, overlap 984573 CAATGGCGATCATGA AACGGCTGGCCC CTT GGGCCAGCCGCG TGATTTCCTCAAGAA TERM 906 984600 - 984578 - G 100 -20.6 -3.78953 | opp_overlap 984576 984573 ATGGCGATCATGAAA CGGCTGGCCC CTT GGGCCAGCCG CGTGATTTCCTCAAG frcA 985442 - 984636 - | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 907 984939 - 984918 - G 93 -13.7 -3.90588 | overlap 984905 CACCTTGGAACCAAA GGCTGCGGC ACGG GCCACAGCC ACACCCTGACGCTGA TERM 908 985196 - 985163 - G 74 -12.5 -2.87881 | gap 1, opp_overlap 985153 985152 CAAGGTTCTGATACA CCGTTTCGATACCCGC CTT GCGGGCATC-AATCGG TGAGCGGAAATTGAT frcC 986500 - 985418 - | ABC transporter membrane spanning protein (sugar) TERM 909 986669 - 986652 - R 95 -14.1 -3.40403 | opp_overlap 986643 986652 TGGCGCTTACCAGAA GGGCGGC CTGA GCCGCCC TTCCGTTGCAATATT TERM 910 986652 - 986669 + r 89 -14.1 -3.19018 | opp_overlap 986652, overlap 986643 TGGCGCTTACCAGAA GGGCGGC CTGA GCCGCCC TTCCGTTGCAATATT frcB 987721 - 986696 - | ABC transporter substrate binding protein (sugar) TERM 911 989083 - 989101 + G 86 -12.4 -4.09864 | TCATCGACTTTTCCG CCGCCGTC ATC GATGGCGG TTTTCCGCAATGGGT TERM 912 989220 - 989246 + G 70 -12.2 -2.8169 | overlap 989206 989219 989218 GTCGGCCACCAGGCC CGGTCGGTTGGC GGT GCCAGCCTGCCG CTGTTTTCCCGTTAT frcR 988071 - 989300 + | transcriptional regulator ROK family TERM 913 989618 - 989601 - g 71 -6.9 -4.21194 | opp_overlap 989611 GTCCATGAGCCAAAA CAGCCGG TCGT CCCGCTG CTGGGGCCGGATTTC Avi_5973 989301 - 989732 + | hypothetical protein TERM 914 989840 - 989811 - T 89 -13.5 -3.35679 | opp_overlap 989813, overlap 989813 GGTTTTGAGCCAGAA GAGGCCGTGCGGG GGGG CCTGCACGGCCTT TTCCATGCTCAAATC TERM 915 989813 - 989838 + T 100 -18.3 -4.21194 | opp_overlap 989811 989813 TTTTGAGCCAGAAGA GGCCGTGCGGG GGGG CCTGCACGGCC TTTTCCATGCTCAAA TERM 916 989838 - 989813 - T 100 -16.1 -3.24924 | opp_overlap 989813, overlap 989811 TTTTGAGCCAGAAGA GGCCGTGCGGG GGGG CCTGCACGGCC TTTTCCATGCTCAAA Avi_5975 990616 - 989849 - | NAD/NADP dependent oxidoreductase Avi_5976 991104 - 990658 - | transcriptional regulator AsnC family TERM 917 991555 - 991576 + G 80 -5.1 -4.95155 | gap 1, overlap 991552 GGGCTGGCGCGCCGG GCGG-CGG AACAAGG CCGACCGC TTTTTGTGCTCTGGC rocF 991228 - 992160 + | arginase ocd 992160 - 993215 + | ornithine cyclodeaminase Avi_5980 993302 - 993460 + | stress induced protein TERM 918 994211 - 994167 - g 74 -11.2 -3.57144 | GGGCCGATCCGCAAA CCGGCCTGTCGCCCGCCCAT TGGGC ACGGGCGATCGGCTGGCTGG CGATGGCCATGGTCG yteR 993593 - 994708 + | di-transpoly-cis-decaprenylcistransferase TERM 919 994687 - 994719 + T 73 -4.1 -4.82333 | gap 1, overlap 994688 TTGCGCGACACACTC CGCATCTCCCG-CA CTGGCC TGACGGGAGCTGCC TTTTTCGGTTGTTAT tonB 995684 - 994731 - | tonB protein exbD 996148 - 995681 - | TonB system transport protein ExbD TERM 920 995828 - 995851 + g 71 -7.4 -4.20918 | gap 1 GCCGACATTCTTATC GGCGCGCAGGA AAA TCC-GCGTGTC TTTATTGCCCTTGGA TERM 921 995879 - 995909 + g 76 -13.3 -2.70932 | opp_overlap 995883, overlap 995881 995883 GGAGACCTGTTCCAG CACAGTCGGCAGC CTGTC GCGGCTGACTGTG TCATTGCCAAGCGCC exbB 997178 - 996153 - | tonB-system energizer ExbB TERM 922 997209 - 997238 + H 70 -6.4 -4.18044 | gap 1, overlap 997210 TCCAAATCCATTGCC AGCA-TGTCCCGC GCATG GCGGGGCAGTGCC TTTAATTGTTTGTCG Avi_5986 997212 - 997766 + | hypothetical protein TERM 923 997851 - 997894 + T 100 -16.8 -3.85698 | overlap 997855 CCCCCCAAGGCGGGC GAAGCCGAAGTCCGCCGGAT CTCC AGCTGACGGACTTCGGTTTC TTTATGAGAAACGGC TERM 924 997855 - 997890 + T 100 -14 -4.55295 | overlap 997851 CCAAGGCGGGCGAAG CCGAAGTCCGCCGGAT CTCC AGCTGACGGACTTCGG TTTCTTTATGAGAAA TERM 925 997963 - 997940 - T 77 -3 -5.08601 | overlap 997941 997955 997956 997959 TGATCTCAACAAAAA TGCCGCTCAT ATAA ATGGACGGCG CATGACGCCATCGGG Avi_5989 998719 - 997946 - | transcriptional regulator CRP family TERM 926 998363 - 998335 - G 91 -4.6 -5.63645 | gap 2 CGAAAAGAGAAAAAA GCCGCTCT-CG-CT CAA AGACGCAGAGCCGC ATGGGTGTCAGCGCT Avi_5991 998861 - 999289 + | hypothetical protein TERM 927 999342 - 999293 - T 100 -14.4 -3.52475 | gap 1, opp_overlap 999299 999300, overlap 999298 CCGAACAGATGACAA GCAGATCTCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGATGT-TGT TATACCGCGAATGCG TERM 928 999338 - 999298 - T 100 -19.8 -2.98786 | opp_overlap 999299 999300, overlap 999293 CAGATGACAAGCAGA TCTCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGATG TTGTTATACCGCGAA TERM 929 999299 - 999338 + T 100 -23.1 -3.78934 | gap 1, opp_overlap 999298 999293, overlap 999300 AGATGACAAGCAGAT C-TCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGATG TTGTTATACCGCGAA TERM 930 999300 - 999336 + T 100 -26.8 -3.4811 | opp_overlap 999298 999293, overlap 999299 GATGACAAGCAGATC TCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGA TGTTGTTATACCGCG Avi_5992 999908 - 999342 - | ECF family sigma factor TERM 931 999549 - 999573 + g 72 -4.9 -4.63527 | overlap 999551 AATGGCTTCGCGCTG GTCGCTCGG CAGTTGA TCGAGCGCC TTTTTGAAGTCCTGA Avi_5993 1000540 - 1000704 + | hypothetical protein TERM 932 1000723 - 1000759 + G 93 -12.9 -4.3739 | opp_overlap 1000725 1000730, overlap 1000728 1000730 CTGCGAACTGGTAAC AACGACAGGGCCCGGCA AAT TGCCGGGCCCTATTGCG TTTTATCACCGGATG TERM 933 1000757 - 1000725 - g 100 -19.9 -3.65314 | opp_overlap 1000723 1000728 1000730, overlap 1000730 GCGAACTGGTAACAA CGACAGGGCCCGGCA AAT TGCCGGGCCCTATTG CGTTTTATCACCGGA TERM 934 1000728 - 1000754 + G 93 -18 -3.41587 | opp_overlap 1000725 1000730, overlap 1000723 1000730 AACTGGTAACAACGA CAGGGCCCGGCA AAT TGCCGGGCCCTA TTGCGTTTTATCACC TERM 935 1000730 - 1000752 + G 100 -20.6 -3.273 | opp_overlap 1000725 1000730, overlap 1000728 1000723 CTGGTAACAACGACA GGGCCCGGCA AAT TGCCGGGCCC TATTGCGTTTTATCA TERM 936 1000752 - 1000730 - g 100 -20.6 -3.01745 | opp_overlap 1000730 1000728 1000723, overlap 1000725 CTGGTAACAACGACA GGGCCCGGCA AAT TGCCGGGCCC TATTGCGTTTTATCA Avi_5995 1000715 - 1001182 + | hypothetical protein Avi_5998 1002391 - 1001324 - | hypothetical protein TERM 937 1001525 - 1001537 + g 70 -2.7 -4.72497 | opp_overlap 1001521 GGGGTCGAAATCGAC TTTGA CGG TCAGA TTTTGTTCATCGATG Avi_5999 1003641 - 1002646 - | two component sensor kinase Avi_6000 1004613 - 1003819 - | two component response regulator TERM 938 1005081 - 1005058 - H 70 -5.4 -4.43844 | gap 1 TCACTAGGGATAAAA GGGTT-TTGAT TCG ACCAACAACCC CTGGATTTCTAGAAT Avi_6001 1005428 - 1005559 + | hypothetical protein TERM 939 1005599 - 1005638 + T 100 -13.8 -3.61715 | opp_overlap 1005604, overlap 1005604 TGACGGGAAATATAG AAAAAGCGTCATGTGTTT TGCA AATCACATGACGCTTTTG TTGTTCAAACCGGTC TERM 940 1005604 - 1005633 + T 100 -13.7 -4.89477 | opp_overlap 1005604, overlap 1005599 GGAAATATAGAAAAA GCGTCATGTGTTT TGCA AATCACATGACGC TTTTGTTGTTCAAAC TERM 941 1005633 - 1005604 - T 100 -13.7 -5.14985 | opp_overlap 1005599 1005604 GGAAATATAGAAAAA GCGTCATGTGTTT TGCA AATCACATGACGC TTTTGTTGTTCAAAC Avi_6002 1006207 - 1005695 - | DNA-binding ferritin-like protein (oxidative damage protectant) Avi_6003 1006752 - 1006318 - | hypothetical protein TERM 942 1006685 - 1006651 - G 72 -4.9 -4.64383 | gap 1, opp_overlap 1006646, overlap 1006646 AATCAGAAAGCAAAA CCCGGCAATAGCGCCA GCGA TGGCGTTGC-GCCGAG CCTTGTCGATTCTTG Avi_6004 1007055 - 1006756 - | hypothetical protein Avi_6005 1007342 - 1007539 + | hypothetical protein TERM 943 1007584 - 1007617 + T 100 -16.1 -5.27923 | gap 1 TGTCGTCTTGCGGGT GCGGCGCTGGAAACCA TGA TGGTT-CTGGCGCCGC TTTTTTATGACGTTA Avi_6007 1009255 - 1007636 - | ATP-dependent DNA ligase Avi_6008 1010265 - 1009252 - | hypothetical protein TERM 944 1010625 - 1010575 - g 70 -11.9 -2.7263 | gap 1, opp_overlap 1010623, overlap 1010574 AGGACGTTGGCAAAT TCGTCAACGAACAGATTTCGGCCG TACC CGGC-GTGGTCCGTTCGCTGACGA CAATGACGTTTACCG Avi_6009 1010412 - 1010648 + | transcriptional regulator Lrp family Avi_6010 1013595 - 1010671 - | aminotransferase protein TERM 945 1011421 - 1011452 + g 85 -15.2 -3.02144 | gap 1, opp_overlap 1011412 GACATAGGCGGCAGC GCTATC-CGGCCCTC TAT GCGGGCCGCGATAGC TGTTGGGGGCGGTGA purU 1014758 - 1013874 - | formyltetrahydrofolate deformylase rfe 1017370 - 1016153 - | undecaprenyl-phosphate alpha N-acetylglucosaminyltransferase Avi_6012 1015119 - 1016210 + | endoglucanase precursor TERM 946 1016742 - 1016713 - GT 76 -9.3 -3.7941 | CATCGGCCAGAACAA TGCTGGTCATGGC CAGC GCCATGACGATCA GCCGCCACGGCATGG TERM 947 1016842 - 1016825 - GT 78 -9.1 -3.86015 | overlap 1016836 GACCGGTTCCAGAAA CACCGAG GACA CCCGGTG CTGGCCAAGAAAGGG Avi_6014 1019673 - 1017460 - | exopolysaccharide polymerization/transport protein TERM 948 1017855 - 1017887 + g 100 -11.3 -4.96848 | overlap 1017856 CGAGATCGGGCTGCT GCAATGCCTGGGCAA GGC TTGGCCGGGCATTGG TTTTTCTGTGCGAGC TERM 949 1017856 - 1017886 + g 88 -14.8 -3.57627 | overlap 1017855 GAGATCGGGCTGCTG CAATGCCTGGGCAA GGC TTGGCCGGGCATTG GTTTTTCTGTGCGAG TERM 950 1018015 - 1017994 - G 74 -7.9 -4.17556 | gap 1, overlap 1017995 CACATCGCCAATAAA GGCGCTGGCC ACC GGCCTGC-CC GCTGCAACAAACAGA TERM 951 1018119 - 1018073 - G 85 -9.4 -4.55491 | gap 3, opp_overlap 1018073 1018081 CATTCAATCAGAAAA CCGGCTGTGCTGGCGACCGCATG GGAC CAGGCG-CCGCCTGC-C-GCCGG TTGTGATGCGGTTGC TERM 952 1019131 - 1019160 + g 73 -12.1 -3.16935 | gap 1, opp_overlap 1019108, overlap 1019121 1019119 CGCCTGGAAGGCGGC GCTTGC-CCGGCGC GCT GCGTCGGAGCGGGC TTCGTCCACCTGTTT TERM 953 1019625 - 1019608 - G 78 -4.1 -5.0133 | gap 1, overlap 1019620 CAGCGCGGCAAAAAA CGCCAGGT AAT ACC-AGCG CCGTCGCAAGATCCC TERM 954 1020263 - 1020275 + G 75 -4.1 -4.85782 | CCGATCTTGTCCATG TCCAT GGG GTGGA TTTCTTTTTCGACGC TERM 955 1020320 - 1020347 + G 100 -10.6 -5.08824 | gap 1 GCTTCCTGCATGGCG CCCCCAT-GGTGG CGA CCACCCATGGCGG TTTTTTCCATACCCG Avi_6015 1019941 - 1021134 + | GumH protein Avi_6016 1021131 - 1022282 + | hypothetical protein TERM 956 1022512 - 1022523 + G 79 -5.8 -4.71776 | overlap 1022494 TGGTGGCGGAACTTG GCAC CGGT GTGC TTTTATTGCGTCTTC Avi_6017 1022337 - 1023857 + | polysaccharide efflux transporter TERM 957 1025656 - 1025646 - g 70 -2.4 -4.81249 | opp_overlap 1025647, overlap 1025647 TCGCAAAGCGAAAAA CGCC GCT GGTG CTGCTCTATAGCGAG Avi_6018 1024016 - 1025926 + | hypothetical protein Avi_6019 1028368 - 1025906 - | mannosidase TERM 958 1026705 - 1026684 - G 85 -15.1 -3.09491 | GACAGATGCAGGTAA CGCGCCGGA TTTT CCCGGCGCG GCCTGGCCGGATCGA Avi_6020 1029385 - 1028423 - | hypothetical protein TERM 959 1028526 - 1028547 + g 70 -4.3 -4.62471 | TTGCGGGTGACGGCA CGGGCCAGT TGGA ACTGAACCG TTTTTGCCAGTTCCG TERM 960 1028809 - 1028797 - G 71 -6.9 -4.24404 | overlap 1028790 AGTGAAAGGCGAAAA GCCGC TTG GCGAC GGCGCGCAGATGCGT Avi_6021 1030296 - 1029388 - | hypothetical protein acd 1031500 - 1030301 - | acyl-CoA dehydrogenase Avi_6023 1031751 - 1031500 - | hypothetical protein TERM 961 1031915 - 1031927 + r 79 -4.1 -5.03145 | CTTCTCGGCTTTTTT TGGGA TTA TCTCA TTTTTTAAAAAGTTG kamA 1033033 - 1031984 - | L-lysine 2,3-aminomutase TERM 962 1032585 - 1032568 - G 71 -10.5 -3.48276 | GGCGTGGCGACAGAA CCAGCGG ATCG CCGCCGG TAAAGATCACTTCCC poxA 1034103 - 1033030 - | lysyl-tRNA synthetase TERM 963 1034551 - 1034532 - g 74 -7.9 -4.15106 | CATGAACCCGGAAAA CTACGAC CAGATC GTCGTAG ATGTCGAGACCATGG efp 1034266 - 1034835 + | translation elongation factor P TERM 964 1034919 - 1034894 - T 100 -11.8 -4.45544 | opp_overlap 1034894 TTTGATTAAGGAAAA GCCCGGTTCG TTTTCG CGAGCCGGGC TTTTTGCTGTTATGC TERM 965 1034894 - 1034919 + T 100 -14.7 -4.90906 | opp_overlap 1034894 TTTGATTAAGGAAAA GCCCGGTTCGT TTTC GCGAGCCGGGC TTTTTGCTGTTATGC TERM 966 1035034 - 1035009 - T 100 -20.5 -5.52023 | opp_overlap 1035009 1035026 ACCATCAATAAAAAA CGCCCGGCGAT CAGG ATCGCCGGGCG TTTGCATAAAAAGTC TERM 967 1035009 - 1035034 + T 100 -20.5 -3.6502 | opp_overlap 1035009, overlap 1035026 ACCATCAATAAAAAA CGCCCGGCGAT CAGG ATCGCCGGGCG TTTGCATAAAAAGTC nodT 1036507 - 1035056 - | nodulation protein T precursor TERM 968 1035269 - 1035314 + g 72 -9.2 -3.64703 | opp_overlap 1035281, overlap 1035261 1035257 1035278 CAGGGACGACGCGCC GTCCTTATA-GGATGCGGTCGA AAGT TCGAGCGCTTCCTTATA-GGAC TTTACATAGGCGCGA TERM 969 1036604 - 1036580 - R 85 -10 -4.1585 | opp_overlap 1036579 1036578 CCACAATCTCGAAAA TGCCGCGC TTTTATTGG GCGCGGCA ACTGTTTCTTAACCT acrB 1039752 - 1036618 - | acriflavin resistance protein B acrA 1041032 - 1039797 - | acriflavin resistance protein A TERM 970 1040760 - 1040774 + g 71 -10 -3.56844 | opp_overlap 1040735, overlap 1040759 AGCCTTGACGAAGCT GCCTTC CTT GAAGGC TATTTCCTTGATCAC ameR 1041873 - 1041205 - | transcriptional regulator TetR family purC 1042829 - 1041879 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 971 1042260 - 1042247 - G 75 -9.5 -3.8512 | opp_overlap 1042247 TATCGACGAGAATAA GGCCG CGCT CGGCC GCCTTCTGTTGGCCG TERM 972 1043017 - 1042995 - R 100 -12.7 -5.63517 | gap 1, opp_overlap 1042990 TTTTCAAAGAAAAAA GCGCGCG-GC CATC GCACGCGCGC TTCCCATTCTCTTAA Avi_6032 1043698 - 1043045 - | membrane protein TERM 973 1045163 - 1045143 - H 74 -9.7 -3.5594 | opp_overlap 1045142 1045139, overlap 1045134 AAGTCAGGGGTGAAA TCCCGCAGC TCA ACTGCGGAA CTGCCTTTGATACTG TERM 974 1045540 - 1045553 + H 82 -8.1 -4.54727 | overlap 1045533 GACATCCTGTGACCG CCACG GAGA CGTGG TTTTCCTTTCGGGGA TERM 975 1046097 - 1046110 + H 72 -5.3 -4.57882 | GACTCCTTTTTAAGT GGTTT TGGC AAACC TTTCTTGTTCTTACG TERM 976 1046845 - 1046868 + H 76 -11 -3.29161 | opp_overlap 1046843, overlap 1046843 1046846 1046864 AGAAAAAATAAGGTT TGCACCGTTC TTAT GAACGGTGCC TGTTCTGGTACATTG TERM 977 1046846 - 1046867 + H 90 -14.5 -2.57014 | opp_overlap 1046843, overlap 1046845 1046843 1046864 GAAAAAATAAGGTTT GCACCGTTC TTAT GAACGGTGC CTGTTCTGGTACATT TERM 978 1047042 - 1047058 + H 70 -10.9 -2.81464 | overlap 1047044 GGATCGTTCGTTGTT CATCGTC TTT GACGATG TCTGATGAATGATCA TERM 979 1047642 - 1047629 - H 80 -5.2 -4.88163 | TGAAGACAAAACAAA CCCC GAGTGT GGGG CGATAGGGTTCGGCA TERM 980 1048822 - 1048806 - H 81 -9.4 -4.08546 | ATGAGTAACGATAAA GGGGGT GAGAG ACCCCC TCGCCGAAAGACCAA TERM 981 1049210 - 1049197 - H 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 982 1050301 - 1050325 + H 81 -12.9 -2.54801 | overlap 1050299 1050298 1050301 CGTTCTCATTGACCA TGCTCATCGAC TTC GTCGATGAGCC ATCTGTTTAGCGCTC TERM 983 1050301 - 1050326 + H 77 -11.3 -3.25204 | gap 1, overlap 1050301 1050299 1050298 CGTTCTCATTGACCA TG-CTCATCGAC TTC GTCGATGAGCCA TCTGTTTAGCGCTCA TERM 984 1050489 - 1050477 - H 100 -10.5 -4.97957 | overlap 1050479 CACACAATAAGAAAA CGGGC AAT GCCCG CCAGCTTCTCATCAA TERM 985 1050698 - 1050686 - H 71 -9.1 -3.51934 | overlap 1050684 CTTCTCTCATAAACA TCGGC CCC GCCGA AAACATAAAGGGTCG TERM 986 1050708 - 1050725 + H 91 -12.7 -3.73068 | opp_overlap 1050708 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 987 1050725 - 1050708 - H 100 -12.7 -4.45168 | opp_overlap 1050708 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 988 1050861 - 1050879 + H 93 -11.7 -4.26189 | opp_overlap 1050853 1050861 ATATCAATACGATAA GCCCTCC CAAAA GGAGGGC TTTTGGCGTTTCTGG TERM 989 1050879 - 1050861 - H 86 -12.4 -3.53933 | opp_overlap 1050861, overlap 1050853 ATATCAATACGATAA GCCCTCCC AAA AGGAGGGC TTTTGGCGTTTCTGG TERM 990 1051238 - 1051256 + H 100 -11 -5.25656 | opp_overlap 1051227 AATAGCCCCGAGTTT CGTAGCCC CCC GGGTTACG TTTTTTGCTGCTTTT TERM 991 1052252 - 1052269 + H 77 -6.3 -4.66953 | gap 1, overlap 1052254 1052255 AGCCTCGTTCGGTGA TCTGACGC ACA GCGTC-GA TTTTTAAACTCTTCG TERM 992 1052528 - 1052539 + H 79 -3.6 -5.11937 | overlap 1052517 TGAATGTCGTTTTTG CGGC ATTT GTCG TTTTTTACAATTGTT TERM 993 1053308 - 1053294 - g 70 -2.1 -4.75372 | overlap 1053301 ATGAGCGATGAAAAA CAGAA TATCG TCCTG CTGCCAGGCGACCAG TERM 994 1053732 - 1053711 - g 71 -7.9 -3.96327 | ACCGTTTACCAGAAA GTGCCGTCA ACAT CGGCGGCAC CTCTCCCTGGCTCCT bexD 1052613 - 1053755 + | polysaccharide export protein TERM 995 1053823 - 1053855 + T 100 -14.4 -3.90082 | AAAATTCGGGTCTTG GACATCTCAAATTC TTGAT GGATTTGAGATGTC TTTAATGCTTTGATG impN 1054809 - 1053904 - | serine/threonine protein kinase TERM 996 1054095 - 1054105 + g 75 -5.4 -4.63218 | TCGCCGCCGATGCCT TGCT GGA AGCA TTTTGTTCCGGGGCG impM 1056247 - 1054796 - | serine/threonine phosphoprotein phosphatase impL 1059842 - 1056348 - | IcmF family protein TERM 997 1056516 - 1056531 + g 70 -4.6 -4.4267 | opp_overlap 1056517, overlap 1056511 1056510 1056517 GTCAAACAGGCGGAA AGGCGA CCAG TCGCCA TTTTCGGTTTTGGCC TERM 998 1058375 - 1058365 - G 74 -6.8 -4.3898 | AGGACGCGCAGAAAA TCGG CAT CCGA CACATTGCGCACCGG impK 1061374 - 1059839 - | OmpA-type porin TERM 999 1061296 - 1061308 + g 70 -2.6 -4.7497 | overlap 1061281 1061301 CCTTGCGGGCGTTGT CGTC CTGGA GGCG TTTTTCCTCCGTGAC impJ 1062711 - 1061371 - | hypothetical protein impI 1063960 - 1062701 - | forkhead-type phosphopeptide-binding protein impH 1064967 - 1063957 - | hypothetical protein TERM 1000 1064468 - 1064455 - G 74 -2.3 -5.00884 | opp_overlap 1064466 ACGGTCGGCAAAAAA TCCGG AAAA CCGCA GGATCACATCTTCAT TERM 1001 1064539 - 1064554 + g 87 -7.6 -4.80178 | opp_overlap 1064539 GGTCAGCGATAGCAA CACCTT GCGG AAGGTG TTTTGTTCCTTGGTG TERM 1002 1065000 - 1064986 - R 91 -12.8 -3.83502 | CACCCCTACAGCAAA GGCCGC TCG GCGGCC CGGGCGGGCCAGCGG impG 1066757 - 1064976 - | hypothetical protein TERM 1003 1065360 - 1065371 + g 79 -5.8 -4.7497 | opp_overlap 1065353, overlap 1065352 GGAGACCAGCCGCCA CTGG CGCG CCAG TTTTTCATGGATACG TERM 1004 1066230 - 1066204 - G 81 -2.9 -5.28481 | gap 1, opp_overlap 1066227, overlap 1066208 GAGGCAATGAAAAAA GTCAGGCGCTTG ACGC CAAGC-CCGGCC ATGCTGTCCTGCTTG TERM 1005 1066309 - 1066277 - G 73 -11.9 -3.14125 | overlap 1066275 GGGACAGACGCAACA CGCCTGCTGCACC TGCAAAG GGTGCCGCTGGCG CATCGAGTGGCAAGC impF 1067259 - 1066750 - | hypothetical protein impE 1068079 - 1067252 - | hypothetical protein TERM 1006 1067694 - 1067725 + g 70 -12.2 -2.84098 | opp_overlap 1067704, overlap 1067691 CGGCTCGCTTCCAGT TCGGCAAGCAGGGC CACG GCCTCGCTTGCCGC TCCTTCCTTCAGGGC TERM 1007 1067891 - 1067920 + g 100 -15.1 -4.77036 | ATCCTGCGGCTGGAA GCGGACAGCCAAT TCGC ATTGGCTGTCGGC TTTTTCATAATCGCC impD 1069443 - 1068076 - | hypothetical protein TERM 1008 1069075 - 1069063 - G 70 -4.7 -4.48221 | overlap 1069064 GATGAAGGGACAAAA GGCCG CTG CGGCT ACCGTTGAAAGTCGT TERM 1009 1069533 - 1069507 - R 100 -16.6 -2.94416 | opp_overlap 1069507 GACGTTGACGATAGA GGTCTGCGCGAA GCA CCCGCGCAGACC TTTGATGATCGATCA TERM 1010 1069507 - 1069533 + r 100 -15.2 -3.79747 | opp_overlap 1069507 GACGTTGACGATAGA GGTCTGCGCG AAGCACC CGCGCAGACC TTTGATGATCGATCA impC 1071027 - 1069546 - | hypothetical protein impB 1071615 - 1071100 - | hypothetical protein TERM 1011 1071666 - 1071654 - R 81 -4.8 -5.14563 | opp_overlap 1071655 1071657 1071659 CTGGGCATCAAAAAA TCCG GTAGG CGGA TGCCGAAGCCTCCGC impA 1072767 - 1071691 - | hypothetical protein TERM 1012 1074018 - 1073995 - g 75 -5.9 -4.60889 | overlap 1073998 AAGTATTTCGAAAAA GACGCAGCG CTTACC CGCCGCTTC CAACCCGTGCATGTG TERM 1013 1075065 - 1075075 + G 72 -5.4 -4.54449 | overlap 1075059 1075058 CAAGGCGCATCCCGG TGTC CAG GACA TTTTCTATCAGGTCT TERM 1014 1075605 - 1075582 - g 75 -3.6 -4.77438 | ACCCATGATGAAAAA GGGTTCGGCG TTCG CGCCGGGGCC GCTGGGGAAAAAGAG clpB 1072987 - 1075698 + | ATP-dependent Clp protease ATP-binding subunit Avi_6054 1075761 - 1076237 + | hypothetical protein TERM 1015 1076254 - 1076281 + F 100 -14.8 -4.35483 | overlap 1076256 CCGCCTTTCTCCTGC AGCGGCACCGCC TTCG GGCGGTGCCGTA TTTGTTGTGATGCCG TERM 1016 1076256 - 1076279 + F 100 -19.6 -3.78004 | overlap 1076254 GCCTTTCTCCTGCAG CGGCACCGCC TTCG GGCGGTGCCG TATTTGTTGTGATGC Avi_6056 1076487 - 1076921 + | hypothetical protein secD 1077785 - 1080304 + | protein-export membrane protein SECD TERM 1017 1080348 - 1080309 - T 100 -16.4 -3.14931 | opp_overlap 1080309 1080313, overlap 1080311 1080313 TCGAGGCTTGATCAA CAGATCCCCGCTGCCGTC CACT GACGGCAGCGGGGCTATC GTTTATGCTGCGTCT TERM 1018 1080309 - 1080349 + T 100 -16.2 -3.99062 | gap 1, opp_overlap 1080309 1080311 1080313, overlap 1080313 TCGAGGCTTGATCAA C-AGATCCCCGCTGCCGTC CACT GACGGCAGCGGGGCTATCG TTTATGCTGCGTCTT TERM 1019 1080346 - 1080311 - T 100 -19 -3.1372 | opp_overlap 1080309 1080313, overlap 1080309 1080313 GAGGCTTGATCAACA GATCCCCGCTGCCGTC CACT GACGGCAGCGGGGCTA TCGTTTATGCTGCGT TERM 1020 1080313 - 1080344 + T 100 -21.6 -3.07455 | opp_overlap 1080311 1080309 1080313, overlap 1080309 GGCTTGATCAACAGA TCCCCGCTGCCGTC CACT GACGGCAGCGGGGC TATCGTTTATGCTGC TERM 1021 1080344 - 1080313 - T 100 -21.6 -3.12895 | opp_overlap 1080313 1080309, overlap 1080311 1080309 GGCTTGATCAACAGA TCCCCGCTGCCGTC CACT GACGGCAGCGGGGC TATCGTTTATGCTGC Avi_6060 1081715 - 1080351 - | hypothetical protein TERM 1022 1080876 - 1080858 - G 71 -7.3 -4.1721 | opp_overlap 1080866 ATGCACATCCCAAAA GGGGCGC AGATG GCGCACC AGGCGCCGCCTCTCA TERM 1023 1081773 - 1081743 - R 78 -11.2 -3.53012 | opp_overlap 1081743 GGCTGCTCCGGTAAA GCCGCCACCAAT GATGGCG ATTGTTGGCGGC TTTTTGGCCTGAGAC TERM 1024 1081743 - 1081773 + r 100 -11.2 -4.62069 | opp_overlap 1081743 GGCTGCTCCGGTAAA GCCGCCACCAAT GATGGCG ATTGTTGGCGGC TTTTTGGCCTGAGAC acd 1082863 - 1081883 - | acyl-CoA dehydrogenase TERM 1025 1082894 - 1082878 - R 72 -5.8 -4.30719 | opp_overlap 1082878 GCGTGGCATAAGAAA GCTCGG GGCCA CCGAAC TCCTTTGGGACATTG TERM 1026 1083081 - 1083094 + r 70 -3.7 -4.64657 | overlap 1083074 1083090 ATGGGACGCGGGATG GCAGG TATT CCGGC TTTTTCCGGCTTTGC Avi_6062 1084274 - 1083165 - | monooxygenase TERM 1027 1083561 - 1083574 + g 74 -8.1 -4.10429 | opp_overlap 1083550 GGCATTCATGCCAAT CCTGG TGCG CCAGG TTTTGCCGAATAGTT Avi_6064 1084565 - 1084936 + | transcriptional regulator ArsR family arsB 1084941 - 1086035 + | arsenical pump membrane protein arsC 1086032 - 1086454 + | arsenate reductase arsH 1086456 - 1087154 + | arsenical resistance protein ArsH TERM 1028 1088051 - 1088081 + G 79 -7.4 -4.63218 | TTGGCACTGGTTTCG GCGCTGCTGATGCC GGG GGCAGTTGCGGTGC TTTTGTTGACGGCGC TERM 1029 1088336 - 1088320 - g 83 -13.7 -3.33696 | opp_overlap 1088322 GGCTCTTGCAATCAA CACCGCC ATT GGCGGTG TTGCGGTCCTCGCCT Avi_6069 1087151 - 1088401 + | hypothetical protein kdpE 1089109 - 1088423 - | two component response regulator TERM 1030 1088465 - 1088488 + g 73 -3 -4.74706 | CCCGGCTTCGGTGAG GATGATTGCC GGTT GGCTTTCGTC TTTTTCAATCTTGGC kdpD 1091814 - 1089106 - | two component sensor kinase TERM 1031 1090437 - 1090418 - G 80 -5 -4.94262 | GAGATGAAAAAGAAA TTATAGGC CAGC GCCGATAA CACGGAGGTCAGAAC TERM 1032 1090641 - 1090651 + g 70 -2.4 -4.84146 | AAAAGGTTTTCGTCA GCCC GAC GCGC TTTGTTTTCTCTGGT TERM 1033 1091257 - 1091286 + g 71 -10 -3.53224 | CAGTTCTTCCGGTGG CAGGTCGATGAG CACGAC CACATCGGCCTG TTTCAACACCCGGTC TERM 1034 1091671 - 1091646 - G 87 -14.7 -3.34104 | CGATAACGATATCAA TGCCCGCCGTC TTTT GACCGCGGGCA CGTGATAACATGGCA kdpC 1092399 - 1091824 - | K+-transporting ATPase C subunit kdpB 1094465 - 1092402 - | K+-transporting ATPase B subunit TERM 1035 1092782 - 1092808 + g 76 -13 -3.04322 | opp_overlap 1092771 CAATCTCGATCAGCT TGGTCGGGCTGG AAT CCAGATCGACCA TATTGGCGGCTTCAC kdpA 1096193 - 1094484 - | K+-transporting ATPase A subunit TERM 1036 1096218 - 1096266 + r 78 -12.4 -2.86164 | gap 1, opp_overlap 1096211 1096209 1096253 CGGAAAGAGGGATTG CGTCCCACATCGTCGTCGCTACG AGAA TGAAGCAACG-CGGTGCGGGACG TCTGATGCTTGGCAG Avi_6076 1098482 - 1096680 - | membrane protein TERM 1037 1099562 - 1099582 + G 82 -8.9 -4.41616 | GTCGAGCGCGACCAG CCGCGCCAG CAG CTGCTGCGG TTTCTTTCCCGCCAT recQ 1098878 - 1100734 + | ATP-dependent DNA helicase RecQ Avi_6078 1100750 - 1102015 + | FAD-dependent monooxygenase dadA 1103294 - 1102029 - | D-amino acid dehydrogenase small subunit TERM 1038 1102964 - 1102978 + g 79 -5.6 -4.71828 | GGCTGTAATCGGCCA GCCGCA GCA TCCGGC TTTTGTTGATCGCGT alr 1104436 - 1103312 - | alanine racemase Avi_6081 1104593 - 1105027 + | transcriptional regulator Avi_6082 1105129 - 1105821 + | transcriptional regulator GntR family Avi_6083 1105923 - 1106525 + | hypothetical protein Avi_6084 1106540 - 1107376 + | hydrolase TERM 1039 1107940 - 1107900 - g 83 -8.2 -4.56597 | gap 1, opp_overlap 1107899 GCCCTTGCCGAAAAA GCGGTCAG-TGCCGCCAGC GATG GCCCGCTGCATCTGAGCGC CGTTATCGAGCGGGA Avi_6086 1107408 - 1108328 + | flavoprotein oxidoreductase Avi_6087 1108332 - 1109369 + | alkanal monooxygenase alpha chain dhaS 1109374 - 1110837 + | aldehyde dehydrogenase TERM 1040 1111049 - 1111036 - g 83 -8.1 -4.60487 | opp_overlap 1111036 CAGGACGTGCAAAAA TCCGC CTGG GCGGA TAAATTCACCGCCAA TERM 1041 1111250 - 1111278 + G 74 -2.4 -4.95167 | gap 1, overlap 1111252 CCACGCTCGATCCGC GTTTCGTGACGGA TTAT TCCGTCG-GCAGC TTTTATTATTCCTTC TERM 1042 1111702 - 1111718 + G 74 -10.9 -3.54424 | opp_overlap 1111699 1111702 AAGAACAAGGAAGCA GCGATGA AGT TCATCGC TTTCGCAACCTCGCC Avi_6089 1110919 - 1111929 + | ABC transporter substrate binding protein (polyamine) TERM 1043 1111987 - 1111947 - f 71 -9.6 -3.53745 | opp_overlap 1111930 1111929 1111975, overlap 1111930 1111944 1111943 1111951 CATACTCTAAAGTAA GGCATTTCCGGCACCGTA AACCA TACGGTGCCGGAGCGTCC TCAGCGTTACGGCAT TERM 1044 1111983 - 1111951 - f 73 -12 -2.6342 | opp_overlap 1111975, overlap 1111947 1111944 1111943 CTCTAAAGTAAGGCA TTTCCGGCACCGTA AACCA TACGGTGCCGGAGC GTCCTCAGCGTTACG Avi_6090 1112017 - 1112919 + | ABC transporter membrane spanning protein (polyamine) TERM 1045 1112976 - 1112992 + G 71 -7.9 -4.06384 | overlap 1112989 TTTTGCTGGTCATCA CGCTGCT GAC GGCGGCG TTTCTCCTGTTGCCA Avi_6091 1112921 - 1113721 + | ABC transporter membrane spanning protein (polyamine) Avi_6092 1113718 - 1114794 + | ABC transporter nucleotide binding/ATPase protein (polyamine) TERM 1046 1115032 - 1115057 + G 91 -12.5 -4.09685 | opp_overlap 1115015 GACGCTGCCGTTCAG GCGGCAATCGC GGCG GCGGATGCCGC TTTTCAACAATGGCG TERM 1047 1115645 - 1115635 - g 83 -5.4 -5.0133 | CAGGCTCTGAAAAAA TCCA CCA TGGA GTTGGGAGGAGCTGA attK 1114954 - 1116345 + | NAD-dependent succinate aldehyde dehydrogenase TERM 1048 1116407 - 1116361 - T 100 -13.8 -4.09685 | opp_overlap 1116366, overlap 1116366 TTTTAGCGCGTAAAA TCAAACGCTCACCTCGGTCT GTTTATA AGGTCGAGGTGGGCGTTTGA CGTAAAGGGACGTTG TERM 1049 1116402 - 1116366 - T 76 -7.9 -4.19735 | opp_overlap 1116366, overlap 1116361 GCGCGTAAAATCAAA CGCTCACCTCGGTCT GTTTATA AGGTCGAGGTGGGCG TTTGACGTAAAGGGA TERM 1050 1116366 - 1116402 + T 100 -14.5 -3.59979 | opp_overlap 1116361 1116366 GCGCGTAAAATCAAA CGCTCACCTCGGTCT GTTTATA AGGTCGAGGTGGGCG TTTGACGTAAAGGGA Avi_6094 1117271 - 1116447 - | hypothetical protein TERM 1051 1117118 - 1117138 + g 83 -13.3 -3.61398 | opp_overlap 1117130 1117131 CCTGGGTTTCCGCCG CCTGGACCA GAA TGGTCCGGG TTATTCCGGCCCGGC Avi_6095 1117717 - 1117292 - | hypothetical protein fdh 1118768 - 1117737 - | D-threo-aldose 1-dehydrogenase TERM 1052 1117824 - 1117834 + g 72 -4.6 -4.57569 | overlap 1117816 AATATTGGTGGAGAT CTGC TCT GCGG TTTTTGCGCCGATCA TERM 1053 1118527 - 1118541 + g 76 -3.5 -4.96848 | GTGCTGATCGTCCAG TCTCG TTGCT CGGGA TTTTTCTCTCGCAAC Avi_6097 1119792 - 1118785 - | ABC transporter membrane spanning protein (sugar) TERM 1054 1119487 - 1119459 - G 90 -16.7 -3.18735 | overlap 1119448 CCAACAGGCCAGCAA GACAGGCCATGGC CCA GCCCTGGCCTGCC GCAACCAGCGCTGCC rbsC 1120788 - 1119796 - | ABC transporter membrane spanning protein (ribose) rbsA 1122293 - 1120785 - | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 1055 1121243 - 1121231 - G 74 -7.7 -4.11216 | opp_overlap 1121237 GCGTCATGTTGAAAA TCACG TTG CGTGA CAGGGTCAGGCCTTC Avi_6100 1123402 - 1122365 - | carbohydrate binding protein Avi_6101 1124557 - 1123445 - | dehydrogenase Avi_6102 1124848 - 1125537 + | transcriptional regulator GntR family garD 1125534 - 1127066 + | D-galactarate dehydratase TERM 1056 1127510 - 1127522 + G 75 -10.5 -3.74872 | opp_overlap 1127498 GAAGGCGGCATTGCC CCGGC CTG GCCGG TTTCCTACGATGAGT Avi_6104 1127177 - 1128742 + | dehydrogenase Avi_6105 1128777 - 1129574 + | short-chain dehydrogenase/reductase Avi_6106 1129605 - 1130729 + | glycerol dehydrogenase protein tctE 1132157 - 1130754 - | two component sensor kinase tctD 1132834 - 1132154 - | two component response regulator TERM 1057 1133218 - 1133192 - g 70 -3.6 -4.62069 | overlap 1133193 CTTCCAGGCGAAAAA TCCCGATATCGC GGT GCGCTACGAGGA CATGCTGACCAGCGA Avi_6109 1132962 - 1134086 + | ABC transporter substrate binding protein (iron) Avi_6110 1134339 - 1135283 + | hypothetical protein TERM 1058 1135337 - 1135315 - g 95 -17.7 -3.54029 | opp_overlap 1135302 1135301 1135299 CTTGACCAATGAGAA GCGCCGCCC TGACT GGGCGGCGC TTGCAATCGCAGTGT Avi_6111 1135280 - 1135774 + | hypothetical protein TERM 1059 1136297 - 1136313 + G 70 -5 -4.45664 | CGGTGACTCGGCATT GCGCGG ATTGA CCTCGC TTTTCATTGGCTTCA Avi_6112 1135797 - 1137314 + | hypothetical protein TERM 1060 1137387 - 1137334 - f 100 -23.6 -4.07885 | gap 3, opp_overlap 1137345, overlap 1137338 1137345 CAGTCCGGGCGAAAA TG-AACAGCCAACAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTGTT--CTGTTTCA TTCGAGCAAATTCTC TERM 1061 1137382 - 1137338 - f 100 -24.6 -3.66908 | gap 2, opp_overlap 1137345, overlap 1137334 1137345 CCGGGCGAAAATGAA CAGCCAACAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTGTT--CTG TTTCATTCGAGCAAA TERM 1062 1137377 - 1137345 - f 100 -29.3 -3.2348 | opp_overlap 1137345, overlap 1137338 1137334 AAAATGAACAGCCAA CAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTG TTCTGTTTCATTCGA TERM 1063 1137345 - 1137377 + F 100 -29.3 -3.90298 | opp_overlap 1137345 1137338 1137334 AAAATGAACAGCCAA CAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTG TTCTGTTTCATTCGA Avi_6114 1137606 - 1137773 + | hypothetical protein TERM 1064 1137798 - 1137824 + T 100 -22.4 -5.18726 | opp_overlap 1137798, overlap 1137823 TATCCGCTTGTAAAA GCCCGCCAGTTG AAC CAACTGGCGGGC TTTTTGTTGTAGGAA TERM 1065 1137824 - 1137798 - T 100 -22.4 -4.07885 | opp_overlap 1137798 1137823 TATCCGCTTGTAAAA GCCCGCCAGTTG AAC CAACTGGCGGGC TTTTTGTTGTAGGAA TERM 1066 1137823 - 1137843 + T 71 -3.3 -4.73682 | opp_overlap 1137798, overlap 1137798 TGAACCAACTGGCGG GCTTTTTGT TGT AGGAAAAGC TTTTGTCTTATGCAG Avi_6115 1138929 - 1137868 - | hypothetical protein TERM 1067 1138441 - 1138458 + g 75 -4.1 -4.77036 | gap 1 ATGCTTTTCGATAAA GGCGATCC AAT GGA-CGTC TTTTTCCTGATCGAA TERM 1068 1138819 - 1138795 - G 70 -2.1 -4.84527 | gap 1, opp_overlap 1138804, overlap 1138797 CGCACAGATGAAAAA GACGC-TGGC CATGCC GCCAAGCGTG CCTGTCATGTTCCAG TERM 1069 1139293 - 1139272 - R 100 -10.9 -4.93696 | opp_overlap 1139272, overlap 1139266 GCTAAAGACGAAAAA GGTGGAGAA ATCA TCCTCCACC TTCATCTGTCGTCTT pcaF 1140531 - 1139326 - | beta-ketoadipyl CoA thiolase pcaJ 1141230 - 1140541 - | 3-oxoadipate CoA-transferase subunit B pcaI 1141934 - 1141227 - | 3-oxoadipate CoA-transferase subunit A TERM 1070 1142495 - 1142513 + G 82 -10.2 -4.25104 | overlap 1142496 CGCTTGCCAGCCTAT TCCGCCTC CAT GGGGCGGG TTTTGCTGGCCGGAG pcaR 1142036 - 1142842 + | transcriptional regulator IclR family pobR 1143743 - 1142817 - | transcriptional regulator AraC family TERM 1071 1142849 - 1142868 + g 83 -9.2 -4.32233 | CTGCGCTGATCTCTG CCTGCGCG CGGT CGCTCAGG TTTTGGAGTTTTTGT TERM 1072 1143691 - 1143703 + g 77 -2.6 -5.04385 | TGCAGCAAAAACTCA CCGG AAACC TCGG TTTTTTCGCCATATA TERM 1073 1144304 - 1144289 - g 84 -6.8 -4.7497 | GTCACCTATGAAAAA GATGGC GTAA GCCACC GGATCGACTGCGATT TERM 1074 1144880 - 1144914 + G 95 -13.7 -4.30576 | gap 1 GTGTGGAAGGCTGTG CGGTTC-TCATGGTGG ATGA CCACCATGATGCACCG TTTTCCTGATACCGG pobA 1143860 - 1145032 + | 4-hydroxybenzoate 3-monooxygenase pcaQ 1145895 - 1145041 - | pca operon transcription factor PcaQ TERM 1075 1145798 - 1145770 - G 70 -12.3 -2.81187 | overlap 1145761 AAAGACCTCACCATA GCGAGTGATGCGG ATG CCGCGCCCCTCGC GCTCAAACAGGCTGA TERM 1076 1146739 - 1146749 + G 83 -8.2 -4.57755 | TTGCGGCCTTGATTG CCGG TAG CCGG TTTTCTGTCGTGGCT pcaD 1146054 - 1146845 + | 3-oxoadipate enol-lactonase TERM 1077 1146871 - 1146861 - f 85 -6.8 -4.84182 | CCAAAAAACAACAAA CGAC ATC GTCG CGGAGACAGAGCGGA pcaC 1146888 - 1147298 + | 4-carboxymuconolactone decarboxylase pcaH 1147344 - 1148084 + | protocatechuate 3,4-dioxygenase beta subunit pcaG 1148086 - 1148703 + | protocatechuate 3,4-dioxygenase alpha subunit TERM 1078 1149251 - 1149277 + G 85 -10.8 -4.28432 | opp_overlap 1149250 GCAACGACACCAAGC CCGTCTGCGAGT TTT GCTCGCCGATGG TTTTGCCTTGCAATT pcaB 1148712 - 1149770 + | 3-carboxy-cis-cis-muconate cycloisomerase TERM 1079 1149834 - 1149845 + T 77 -7.2 -4.56597 | TCACATCAATCACCA CCCG GCCA CGGG TTTTTCCAGCAAGGA Avi_6131 1150806 - 1149811 - | zinc-binding alcohol dehydrogenase TERM 1080 1150326 - 1150296 - G 90 -11.1 -4.27316 | gap 1, overlap 1150317 CCTGCGAAGCCAAAA GGCTGACGGCCATG GAGC CAAGGCCGCC-GCC AGCCCCTGTTACCAG TERM 1081 1151993 - 1152018 + G 77 -2.5 -5.06451 | gap 1, overlap 1151978 1151965 1151981 1152001 CTGCGGTCGCTACAG CGCAGTTGTCGG TGT CCGATT-TTGCG TTTTTTGAAATGCTC TERM 1082 1152001 - 1152011 + G 76 -6.8 -4.5366 | overlap 1151965 1151981 1151993 GCTACAGCGCAGTTG TCGG TGT CCGA TTTTGCGTTTTTTGA ftsK 1151218 - 1154082 + | ftsK cell division protein TERM 1083 1154237 - 1154189 - T 100 -13.9 -5.22258 | opp_overlap 1154193, overlap 1154193 1154196 CAAACGAAAACAAAA GAAACAAGACTCTGTCTGGTTCA ATC TGAACCTGACAGAGTCTAGGCGC ATAATAGATACCAAC TERM 1084 1154233 - 1154193 - T 100 -19.9 -5.04377 | opp_overlap 1154193, overlap 1154189 1154196 CGAAAACAAAAGAAA CAAGACTCTGTCTGGTTCA ATC TGAACCTGACAGAGTCTAG GCGCATAATAGATAC TERM 1085 1154230 - 1154196 - T 100 -20.2 -4.53966 | opp_overlap 1154193, overlap 1154193 1154189 AAACAAAAGAAACAA GACTCTGTCTGGTTCA ATC TGAACCTGACAGAGTC TAGGCGCATAATAGA TERM 1086 1154252 - 1154278 + T 100 -16.6 -4.4267 | opp_overlap 1154252 CATAATAGATACCAA CGCCGTGCCTCT GCT AGGGGCATGGCG TTTTGCATTTTAACG TERM 1087 1154278 - 1154252 - T 83 -12.2 -3.38966 | opp_overlap 1154252 CATAATAGATACCAA CGCCGTGCCTCT GCT AGGGGCATGGCG TTTTGCATTTTAACG Avi_6134 1155355 - 1154309 - | ABC transporter Avi_6135 1156893 - 1155352 - | ABC transporter membrane spanning protein TERM 1088 1156587 - 1156577 - G 74 -6.8 -4.3739 | TAGCTGTGCACAAAA GCTG GAA CAGC AAGTGGCGTCACCAT TERM 1089 1157034 - 1157011 - R 100 -16.8 -5.05782 | overlap 1156997 ATTGACTCTAAAAAA GGCAATCGCC GATT GGCGATTGCC CTAAGCCTTTCTTGA Avi_6136 1158133 - 1157144 - | ABC transporter substrate binding protein (iron) TERM 1090 1157435 - 1157453 + g 72 -5.2 -4.42619 | overlap 1157448 ATGCTTGAAATAATG CAGTGCCA CGT TGCCGCTG TTTTCTGCGGTCTTG TERM 1091 1158339 - 1158351 + r 72 -6.2 -4.3739 | opp_overlap 1158339 GGCCGTGGGAATGAA GGGC TCGAT GCCC TTTTATCGCACGCTA Avi_6137 1160642 - 1158465 - | hypothetical protein TERM 1092 1159284 - 1159272 - G 70 -4.1 -4.57073 | overlap 1159273 TATGGTCTCGAAAAA CTTCC AGA GGAAA CCGCAGACAAAGGCG TERM 1093 1160757 - 1160781 + r 100 -14.3 -4.24123 | opp_overlap 1160757 ATTTTCATGCAAAAA TGGCGCGAAAC CGA GTCTCGCGCCA TTTTCCAGTTATTAG TERM 1094 1160781 - 1160757 - R 100 -16.5 -4.66163 | opp_overlap 1160757 ATTTTCATGCAAAAA TGGCGCGAAAC CGA GTCTCGCGCCA TTTTCCAGTTATTAG Avi_6139 1161277 - 1160804 - | hypothetical protein TERM 1095 1161761 - 1161740 - g 70 -3.7 -4.59773 | gap 1, opp_overlap 1161752, overlap 1161742 TGCGAGTTTCAAAAA TC-GACCGCA CCT TTCGGTCTGA CCAAATTCTGCATCT Avi_6140 1161500 - 1161862 + | hypothetical protein exsA 1162623 - 1164434 + | ABC transporter nucleotide binding/ATPase protein TERM 1096 1164510 - 1164454 - T 76 -3.8 -4.98255 | gap 2, opp_overlap 1164472, overlap 1164448 1164455 1164472 TTCCAACGACAAAAA TGC-TTTG-CGTCATACCAAGGGCCATT GAA AATGGCCCTTGGTATCAGGTCTGCCGCA TAGCGTTGTGGCATT TERM 1097 1164472 - 1164490 + T 89 -13.2 -3.27498 | opp_overlap 1164455 1164454 1164472 TTTGCGTCATACCAA GGGCCATT GAA AATGGCCC TTGGTATCAGGTCTG TERM 1098 1164490 - 1164472 - T 85 -13.2 -3.25823 | opp_overlap 1164472, overlap 1164455 1164454 TTTGCGTCATACCAA GGGCCATT GAA AATGGCCC TTGGTATCAGGTCTG Avi_6144 1165798 - 1164497 - | Signal transduction histidine kinase TERM 1099 1165812 - 1165779 - G 80 -2.3 -5.22794 | opp_overlap 1165789, overlap 1165768 1165789 ACAATGACGAAAAAA CGCCAGAAAAGCCGA GGCA TCAGCTATCCTGTAG CAGAATGTAACCCTG TERM 1100 1165802 - 1165789 - G 70 -4.5 -4.47485 | opp_overlap 1165789, overlap 1165779 AAAAACGCCAGAAAA GCCGA GGCA TCAGC TATCCTGTAGCAGAA Avi_6145 1166487 - 1165798 - | two component response regulator TERM 1101 1166949 - 1166961 + G 70 -2.6 -4.86861 | AAACTTTTGCTGATG GGGC TGCTC GCTC TTTGTTTCTTTCTTG Avi_6146 1166745 - 1167497 + | membrane protein TERM 1102 1167611 - 1167597 - T 83 -10 -4.08394 | AGATTCTGTTGAAAA CCAGAC AGA GTCTGG ATGTCGGAATACGGC TERM 1103 1167770 - 1167798 + T 90 -9.7 -4.31815 | opp_overlap 1167770 TAGTTACAAGCAAAA GTGTCAAACCT TTGGGTT GGGTTTGACAC TTTATGTTCTACTTT TERM 1104 1167798 - 1167770 - T 90 -9 -4.50058 | opp_overlap 1167770 TAGTTACAAGCAAAA GTGTCAAACC TTTGGGTTG GGTTTGACAC TTTATGTTCTACTTT Avi_6147 1168834 - 1167800 - | Integrase Avi_6148 1169101 - 1168847 - | hypothetical protein TERM 1105 1169718 - 1169733 + r 72 -10.4 -3.38812 | overlap 1169715 TAGAACTTTGCGTGC CGCCGA CATC TCGGCG TATTCTTGGCGGCGC TERM 1106 1170016 - 1170038 + r 70 -6.2 -4.27316 | overlap 1170002 1170001 CGCGCCAAAATTTGC GCTCGGTTTG CCT CATATCGGGC TTTTGCCTTGGCGGC Avi_6150 1170488 - 1170141 - | bacteriophage protein TERM 1107 1170174 - 1170195 + g 71 -7.3 -4.22748 | gap 1, opp_overlap 1170160, overlap 1170187 AGCGAATGCCCGCTT CGCCTGTTCG CGC CGAA-GGGCG TTTCGTTTCTTGGTG Avi_6151 1171625 - 1170804 - | hypothetical protein TERM 1108 1171468 - 1171479 + g 75 -3.6 -4.84359 | overlap 1171471 CCGATCAACTCGTAT GTGC TGCC GCGC TTTTTGTGGCGGTGC Avi_6152 1172365 - 1171622 - | hypothetical protein Avi_6153 1172892 - 1172347 - | hypothetical protein dnaN 1174021 - 1172885 - | DNA polymerase III beta subunit Avi_6155 1174587 - 1174222 - | hypothetical protein Avi_6157 1175061 - 1174738 - | hypothetical protein Avi_6158 1175548 - 1175228 - | hypothetical protein Avi_6161 1176852 - 1175980 - | transcriptional regulator Avi_6162 1177267 - 1176917 - | hypothetical protein TERM 1109 1176958 - 1176942 - G 78 -8.7 -4.11216 | GCTTGATTTTCAAAA GCGATGA CAT TCACCGC ATCAACCAAAGCTGA TERM 1110 1177121 - 1177135 + g 79 -7.1 -4.70659 | opp_overlap 1177111 GAGACCGGCGTTCTC GCTGC ATCGC GCAGC TTTTTCCATCTGCGC Avi_6163 1177459 - 1178076 + | hypothetical protein Avi_6164 1178083 - 1178481 + | hypothetical protein Avi_6165 1179360 - 1179028 - | hypothetical protein Avi_6166 1179433 - 1179627 + | hypothetical protein TERM 1111 1179684 - 1179719 + G 100 -13.2 -5.08601 | gap 1, overlap 1179685 GACTTGCGCGGTCAT TGCAGCCGGGCG-GGCG GAC CTTCACGCCCGGCTGCC TTTTTATTCCAATAC TERM 1112 1179685 - 1179718 + G 100 -16.7 -3.64438 | gap 1, overlap 1179684 ACTTGCGCGGTCATT GCAGCCGGGCG-GGCG GAC CTTCACGCCCGGCTGC CTTTTTATTCCAATA TERM 1113 1179849 - 1179887 + G 72 -8.8 -3.93782 | gap 1, overlap 1179849 ATCCTTCGCCGGGTT GTGG-TGCTGGCCGCGA CCGCCA TTGCGGCCAGCTTCCCC TTTGATCTTCGCTCC TERM 1114 1179931 - 1179958 + G 100 -17 -4.67353 | TGGGGCAATGCGCGA GCGGCCTGAGGC GATG GCTTCGGGCCGC TTTTTGCGTGGGTGG Avi_6167 1179624 - 1180028 + | hypothetical protein Avi_6168 1180097 - 1180555 + | hypothetical protein TERM 1115 1181504 - 1181519 + G 70 -2.4 -4.82667 | overlap 1181496 GGCGTTTGACGCTGG CGACGT GCAG GCGGCG TTTTTGCTGTCATCC TERM 1116 1181728 - 1181746 + G 84 -7.4 -4.74103 | opp_overlap 1181728 GCGGACGGCCCGAAA CGGTCC AAGGTGA GGACCG TTTTTCGCTTGAAGA Avi_6173 1181421 - 1183196 + | hypothetical protein Avi_6175 1183422 - 1183769 + | hypothetical protein Avi_6177 1183766 - 1184938 + | DNA-cytosine methyltransferase TERM 1117 1184952 - 1184926 - f 74 -10.8 -3.14132 | GCTTCTTGCTATGAA GGTGACGGCATG AGC CACGACGCCACC AATTGGGCCATTCGC TERM 1118 1185258 - 1185234 - g 100 -14.3 -4.386 | overlap 1185235 1185247 CAAGGTTTCAGAAAA GCCGTGTCCAG AAT CTGGACACGGA CAAGAGGACGCCGTG TERM 1119 1185257 - 1185235 - g 93 -17.8 -3.22678 | overlap 1185234 1185247 AAGGTTTCAGAAAAG CCGTGTCCAG AAT CTGGACACGG ACAAGAGGACGCCGT TERM 1120 1186102 - 1186130 + G 71 -12.3 -2.94872 | overlap 1186098 1186096 GCTGAGAACTTCCTC CCCTTCGTGCCGG ATA CCGGCGCGATGCG TGTGGTCTATTTCCC Avi_6178 1184935 - 1186230 + | hypothetical protein TERM 1121 1187019 - 1187037 + F 100 -11.7 -4.5442 | opp_overlap 1187019 ATGATTGACAGACAA GGCGACC AATGC GGTCGCC TTTTGTCGTTAAAGA TERM 1122 1187037 - 1187019 - f 88 -12.4 -3.60792 | opp_overlap 1187019 ATGATTGACAGACAA GGCGACCA ATG CGGTCGCC TTTTGTCGTTAAAGA Avi_6179 1187055 - 1187486 + | prophage LambdaSo holin Avi_6181 1187623 - 1188264 + | phage terminase small subunit P27 family Avi_6182 1188275 - 1190017 + | phage terminase-like protein large subunit TERM 1123 1190236 - 1190216 - g 74 -11.1 -3.57144 | opp_overlap 1190215 GCCTGCATTGCGAAA GCATCGGCA TGT TGCCGCTGC ATCTGATGTATCAGG Avi_6184 1190017 - 1191261 + | portal protein Avi_6185 1191239 - 1192093 + | ClpP-type protease Avi_6186 1192103 - 1193518 + | phage major capsid protein HK97 family TERM 1124 1193503 - 1193520 + F 72 -7.7 -3.91897 | opp_overlap 1193505 CATCAAGCTCCTGAA GATCGGC ACAA GCTGATC TTTCTCGGTCAGGCG Avi_6187 1193571 - 1194008 + | hypothetical protein TERM 1125 1193990 - 1194008 + F 70 -5.9 -4.21974 | overlap 1193991 TGGCTTCAACAATCC GCAGGCC AATCA GGCCTGA TTTATTCGATAATGG TERM 1126 1194022 - 1194047 + F 81 -10.3 -3.99592 | opp_overlap 1194021 1194022, overlap 1194023 GATTTATTCGATAAT GGCGGGGCCGG GTTT TCGGCCCTGCA TTTCTCCTGATGGGT TERM 1127 1194023 - 1194046 + F 87 -13.8 -2.99273 | opp_overlap 1194021 1194022, overlap 1194022 ATTTATTCGATAATG GCGGGGCCGG GTTT TCGGCCCTGC ATTTCTCCTGATGGG Avi_6188 1194071 - 1194667 + | hypothetical protein Avi_6189 1194667 - 1194987 + | Bacteriophage head-tail adaptor TERM 1128 1195194 - 1195207 + G 70 -3.7 -4.56597 | opp_overlap 1195194 GACAAAGTTGACCAA GCGCC AGGC GACGC TTTTTCAGAAGCAAA TERM 1129 1195295 - 1195305 + G 83 -8.2 -4.58395 | opp_overlap 1195294 GGAATGATGAACAGG CGGC GGA GCCG TTTTTGAGGCCTGCC Avi_6190 1194991 - 1195437 + | hypothetical protein Avi_6192 1195441 - 1195836 + | hypothetical protein TERM 1130 1195986 - 1195972 - g 78 -11.4 -3.75153 | CCCCGCCAAGCGAAA CCACCG ACA CGGTGG ATGTAACGCACCAGC TERM 1131 1196310 - 1196332 + G 74 -11.2 -3.61764 | overlap 1196328 GCGCCTGCTGTGGTC GGCACGCCGA CCG TTGGCGCGCC TTTGACGCTTGATCC Avi_6193 1195854 - 1196540 + | outer capsid protein Hoc Avi_6194 1196548 - 1196931 + | hypothetical protein TERM 1132 1197178 - 1197158 - g 86 -6.7 -5.00138 | overlap 1197160 CATCGAAAGCAAAAA GTCGGAGGC ACC GCCTGCGGC TGCTACCAAAAACGA Avi_6195 1196994 - 1197245 + | hypothetical protein TERM 1133 1197814 - 1197836 + G 73 -11.2 -3.41689 | opp_overlap 1197809, overlap 1197810 1197818 TCTTGCAATAGCGCA GGCTGGCGGC GCG GCTGGCAGCC TTGGTGTCTCTTTTG TERM 1134 1198064 - 1198053 - g 70 -2.2 -4.74706 | CGGAACAGCTAAAAA CCAA GATG TCGG GCCTGTCTGATGAAG Avi_6196 1197356 - 1199635 + | phage tail protein TERM 1135 1200231 - 1200242 + G 70 -3.6 -4.60889 | GCTGGTGCCTGTGCT GGCT ATGC GGCC TTTTTCCACGTCCTT Avi_6197 1199635 - 1200354 + | hypothetical protein TERM 1136 1200554 - 1200566 + G 71 -10.5 -3.53012 | CAGCATTGGCGCGGT GCGCG ATC CGCGC TTTGGCGAGGCGGCG Avi_6198 1200357 - 1200938 + | Transcription elongation factor Avi_6199 1201228 - 1200917 - | hypothetical protein TERM 1137 1201128 - 1201118 - G 77 -2.4 -5.14563 | GCGTTGATCAAAAAA CGCG GCT CGCT GCTGGATCTTTGGTC TERM 1138 1201228 - 1201250 + H 70 -6.2 -4.25104 | overlap 1201243 GCTTATCAATACACA TCTTGCCGGT GTT GTCGGCGGGA TTTTCGTCAAGCCGC TERM 1139 1202134 - 1202151 + G 78 -9.1 -4.14243 | gap 1, overlap 1202135 ATCATCCATGTGATG C-GCCGCG ATC CGCGGCTG TTTTCGCCTGACATG TERM 1140 1202135 - 1202149 + G 84 -12.8 -3.6692 | overlap 1202134 TCATCCATGTGATGC GCCGCG ATC CGCGGC TGTTTTCGCCTGACA Avi_6201 1201345 - 1203510 + | hypothetical protein TERM 1141 1204526 - 1204542 + G 74 -2.2 -4.93365 | overlap 1204528 CGTTATCATCGGAGA GGGAAG GAACA CTTCGC TTTTTAGTTATCCGA TERM 1142 1205165 - 1205181 + G 70 -12.3 -2.83403 | opp_overlap 1205168, overlap 1205164 GGTCTCCGGGTCAAG CGATGCC ATT GGCATCG ATTTGCTGCGGACGG TERM 1143 1205415 - 1205405 - g 71 -6.8 -4.10161 | overlap 1205406 GATCAGCGGGCAAAA CCGT GCG ACGG GCTGCACGACGGCGC dsd 1203654 - 1205477 + | D-serine deaminase TERM 1144 1205753 - 1205741 - f 82 -7.7 -4.45175 | GATTAAAAAAGGAAA CGATC ATG GATCG CGCGAAATTCTTCGC Avi_6204 1205746 - 1206354 + | hypothetical protein TERM 1145 1206407 - 1206431 + F 89 -14.3 -3.14132 | overlap 1206409 TTTCGCGCTCGCCTT TAGCGCCGGGA TTA TCCTGGCGCTG TTGATCGGCGGACAG TERM 1146 1206409 - 1206429 + F 95 -14.7 -3.13403 | overlap 1206407 TCGCGCTCGCCTTTA GCGCCGGGA TTA TCCTGGCGC TGTTGATCGGCGGAC TERM 1147 1206811 - 1206850 + F 70 -4.5 -4.44667 | opp_overlap 1206822, overlap 1206812 1206814 1206822 CGTACCGGCGGAATT TGA-TGACGAAACCAAGGA TGTT TCCATGGTTT-GTCACTCG TTTGTTGTTGACGGG emrA 1206952 - 1207353 + | multidrug resistance efflux pump TERM 1148 1207337 - 1207349 + F 74 -10.5 -3.25823 | opp_overlap 1207336 GGATGTCTAAGCGAT CGCGC CGC GCGCG TTGATATCGCCAGCG Avi_6209 1207610 - 1207930 + | hypothetical protein Avi_6210 1207932 - 1208453 + | hypothetical protein TERM 1149 1208660 - 1208649 - g 72 -5.8 -4.42062 | opp_overlap 1208649 1208656 TAGGCTGGAAAGAAA TCCG CGAC CGGA TTATTGCCGGTTCAT Avi_6211 1208459 - 1208752 + | hypothetical protein TERM 1150 1208787 - 1208810 + T 100 -18.2 -6.20267 | opp_overlap 1208787 TGGTTCAACGCAAAA GCCCCTACGG AATG CCGTAGGGGC TTTTTTTGTTTTTGC TERM 1151 1208810 - 1208787 - T 100 -18.2 -4.27316 | opp_overlap 1208787 TGGTTCAACGCAAAA GCCCCTACGG AATG CCGTAGGGGC TTTTTTTGTTTTTGC TERM 1152 1209014 - 1209042 + T 70 -5.5 -4.31815 | gap 1, overlap 1209010 TAGTTACACGTTGAA TTGTCAAAC-GA TTACGC TCGGTTTGACAA TTTATGTTCTCGTTT surf 1209897 - 1209145 - | SurF1 family protein TERM 1153 1209949 - 1209916 - R 100 -17.5 -3.54459 | opp_overlap 1209906 TCAACCGTCCTGAAA CGGATCGGGCGACAT GCAT ATGCCGCCCGATCGG ATATCGGCGTCCTTA cyoD 1210360 - 1209962 - | cytochrome o ubiquinol oxidase subunit IV cyoC 1210974 - 1210357 - | cytochrome o ubiquinol oxidase subunit III cyoB 1212982 - 1210979 - | cytochrome o ubiquinol oxidase subunit I cyoA 1214135 - 1213023 - | cytochrome o ubiquinol oxidase subunit II TERM 1154 1214556 - 1214537 - H 100 -3.6 -5.69068 | CAAAAACAGAAAAAA TTATTCGC ACCC GGGAATAA GAAAGGGTCCTCGTG Avi_6218 1214585 - 1215184 + | ECF family sigma factor Avi_6219 1215168 - 1215992 + | transcriptional regulator Avi_6220 1216088 - 1216804 + | hypothetical protein TERM 1155 1216846 - 1216883 + T 100 -19.3 -3.21595 | opp_overlap 1216848 1216852, overlap 1216848 1216852 AAATGCAATAGAGAC AATAAAGCCGCCGGTCC TGAG GGATCGGCGGCTTTATG TTGATAGTGGCCCTT TERM 1156 1216848 - 1216881 + T 100 -21.9 -3.17051 | opp_overlap 1216848 1216852, overlap 1216846 1216852 ATGCAATAGAGACAA TAAAGCCGCCGGTCC TGAG GGATCGGCGGCTTTA TGTTGATAGTGGCCC TERM 1157 1216881 - 1216848 - T 100 -19.7 -3.69364 | opp_overlap 1216848 1216846 1216852, overlap 1216852 ATGCAATAGAGACAA TAAAGCCGCCGGTCC TGAG GGATCGGCGGCTTTA TGTTGATAGTGGCCC TERM 1158 1216852 - 1216877 + T 100 -18.3 -4.24745 | opp_overlap 1216848 1216852, overlap 1216848 1216846 AATAGAGACAATAAA GCCGCCGGTCC TGAG GGATCGGCGGC TTTATGTTGATAGTG TERM 1159 1216877 - 1216852 - T 100 -16.1 -4.45484 | opp_overlap 1216852 1216848 1216846, overlap 1216848 AATAGAGACAATAAA GCCGCCGGTCC TGAG GGATCGGCGGC TTTATGTTGATAGTG Avi_6221 1217367 - 1216918 - | pseudoazurin TERM 1160 1217551 - 1217577 + H 73 -9.4 -3.6608 | overlap 1217552 TCAAGAAGCCTGGGG GTGCAAGGTCCA GAC TGGACCTCGCAG TTTCCCTGCGGTGAT TERM 1161 1217552 - 1217576 + H 81 -12.9 -2.79327 | overlap 1217551 CAAGAAGCCTGGGGG TGCAAGGTCCA GAC TGGACCTCGCA GTTTCCCTGCGGTGA nnrU 1217641 - 1218354 + | denitrification regulatory protein TERM 1162 1218927 - 1218950 + G 79 -7.4 -4.66537 | gap 1, overlap 1218927 1218929 TGGCAACGATGTCCT G-ATCGGCGGC GGC GGCGCCGATAC TTTTGTATTCAGCAG exsH 1218532 - 1219959 + | endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein TERM 1163 1219986 - 1220008 + T 100 -14.8 -5.95539 | opp_overlap 1219986 TTCCTCAAACAAAAA GCCCCGGCTG GAT TGGCCGGGGC TTTTTTTGTTTGCAC TERM 1164 1220008 - 1219986 - T 100 -13.4 -5.27335 | opp_overlap 1219986 TTCCTCAAACAAAAA GCCCCGGC TGGATTG GCCGGGGC TTTTTTTGTTTGCAC dctA 1221423 - 1220089 - | C4-dicarboxylate transport protein TERM 1165 1221389 - 1221404 + g 76 -11.8 -3.41229 | opp_overlap 1221380 TAAAATGGGAGCTTG CCGCCC TGCG GGGCGG TTGTGGTAGAAATAT TERM 1166 1221572 - 1221592 + H 74 -7.5 -4.0896 | opp_overlap 1221564 TTGAAAAGCCGCGTT TCAGCCATG ATC CGTGGCGGA TTTTCGCGCGAATTT TERM 1167 1222462 - 1222486 + G 70 -4.1 -4.56597 | CCAGGCAGCGGGATA CCGGACGAGCT TTT GGTGCGTACGG TTTTTCCCGGCGCCA TERM 1168 1222622 - 1222638 + G 86 -4.4 -5.32882 | gap 1 GGCGACTGTTGACCT TGGC-CC TGCT GGCGCCA TTTTTTCTGGTCGTC dctB 1221724 - 1223526 + | two component sensor kinase for C4-dicarboxylate transport dctD 1223523 - 1224899 + | two component response regulator for C4-dicarboxylate transport Avi_6229 1225648 - 1224926 - | transcriptional regulator TetR family Avi_6230 1225981 - 1226277 + | hypothetical protein Avi_6233 1227433 - 1226525 - | transcriptional regulator ROK family nagA 1228632 - 1227430 - | N-acetylglucosamine-6-phosphate deacetylase glmS 1229651 - 1228629 - | glucosamine--fructose-6-phosphate aminotransferase Avi_6236 1230432 - 1229680 - | transcriptional regulator GntR family Avi_6237 1230864 - 1232045 + | oxidoreductase malF 1232055 - 1232939 + | ABC transporter membrane spanning protein (maltose) malG 1232936 - 1233796 + | ABC transporter membrane spanning protein (maltose) TERM 1169 1233903 - 1233917 + G 71 -7.8 -4.08216 | overlap 1233876 GGCGCTGCTGGCAAG CTCGGC TCT GTCGAG TTTTGCGGCGGATAA TERM 1170 1234083 - 1234065 - g 73 -11 -3.41229 | opp_overlap 1234072 1234073 1234076, overlap 1234073 ACAGTGCCAGGACAA GGCAACCA CTT TGGCTGCC GCCGGGACGCCGGTT malE 1233853 - 1235076 + | ABC transporter substrate binding protein (maltose) TERM 1171 1235088 - 1235118 + F 100 -19.8 -5.29846 | opp_overlap 1235081 1235078 GTAAACATCGGGGCT CCGGCTGCGGATCA TCT TGGTTCGCAGCCGG TTTTTGTTTGGAATT malK 1235180 - 1236313 + | ABC transporter nucleotide binding/ATPase protein (maltose/maltodextrin) Avi_6243 1237440 - 1236340 - | hypothetical protein Avi_6244 1238746 - 1237442 - | hypothetical protein TERM 1172 1238144 - 1238158 + g 79 -5.6 -4.84642 | overlap 1238141 AAGGCCAAGTGTGCG GGCCAG CGC CTCGCC TTTTGTTGCTTTGCC Avi_6246 1239454 - 1238963 - | hypothetical protein TERM 1173 1239179 - 1239169 - G 70 -2.4 -4.86731 | TGGTGGTAAAGAAAA TCGC CGT GCGC GGGTCTTCACCGTGG TERM 1174 1239727 - 1239750 + G 78 -8.8 -4.18494 | opp_overlap 1239728, overlap 1239728 TCGAACAGAGCCATA AGGCGATCGG CAAC CTGATCGCCA TTTTGCATGAGGCTG TERM 1175 1239749 - 1239728 - g 73 -10.9 -3.42583 | gap 1, opp_overlap 1239728 1239727 CGAACAGAGCCATAA GGCGATC-GG CAA CCTGATCGCC ATTTTGCATGAGGCT TERM 1176 1239728 - 1239749 + G 73 -12.3 -3.10775 | opp_overlap 1239728, overlap 1239727 CGAACAGAGCCATAA GGCGATCGG CAAC CTGATCGCC ATTTTGCATGAGGCT Avi_6248 1239567 - 1239953 + | translation initiation inhibitor TERM 1177 1240107 - 1240130 + G 72 -4.4 -4.56775 | overlap 1240108 GGCCGAGCGGGCGCA AGTGTCGCCG CCGA CGGTGACCCG TTTTTGCCGCAGGCT Avi_6249 1239973 - 1240836 + | transcriptional regulator RpiR family Avi_6250 1240838 - 1241614 + | short-chain dehydrogenase TERM 1178 1241807 - 1241820 + G 74 -8.1 -4.25104 | opp_overlap 1241816 GAAGGACGACCCGGT CTGCG ACAA CGCAG TTTTCCTGCGACGCA TERM 1179 1242089 - 1242128 + G 71 -10.7 -3.60296 | gap 1 GCCTTTTTCGCTGCT GCCGTGGCCCGTCG-AGG CGAAC CTTGCGGCGGGCGATGGC TTTCCGGTGGCGATC Avi_6251 1241649 - 1243568 + | beta-N-acetylhexosaminidase TERM 1180 1243760 - 1243772 + G 71 -10.5 -3.53091 | CATGCCCGCGCCGTT CCGGG CGG CCCGG TTTCGCGCCAGACCT Avi_6252 1243580 - 1245046 + | hypothetical protein TERM 1181 1245129 - 1245103 - f 82 -11.5 -3.55444 | opp_overlap 1245103 GTCTCACTCCGCAAA GGTGCCGCCGG TGAAG CCAGCGGCAGC TTGTTTTCACAAAGA TERM 1182 1245103 - 1245129 + F 85 -10 -4.17048 | opp_overlap 1245103 GTCTCACTCCGCAAA GGTGCCGCCGGT GAA GCCAGCGGCAGC TTGTTTTCACAAAGA TERM 1183 1245171 - 1245215 + G 100 -8.6 -4.90079 | gap 1, opp_overlap 1245177, overlap 1245172 TGCCGCCAGTTCTCT CCATAATCGCCGCCAATCCGG GTAT CCGGATTAGCG-CGATTGCGA TTTTCTTCTTCGGCT TERM 1184 1245172 - 1245214 + G 77 -12.1 -3.52963 | gap 1, opp_overlap 1245177, overlap 1245171 GCCGCCAGTTCTCTC CATAATCGCCGCCAATCCGG GTAT CCGGATTAGCG-CGATTGCG ATTTTCTTCTTCGGC TERM 1185 1245209 - 1245177 - g 87 -15 -3.28924 | gap 1, opp_overlap 1245172 1245171 CAGTTCTCTCCATAA TCGCCGCCAATCCGG GTAT CCGGATTAGCG-CGA TTGCGATTTTCTTCT TERM 1186 1245763 - 1245775 + G 86 -3.3 -5.58074 | AAGGGCCGAACCCTC CGCAA GTC TGGCG TTTTTTTCATCCTTG TERM 1187 1246095 - 1246107 + G 71 -10.5 -3.53012 | ATGTCTATCTGCTTT CCGGC ATT GCCGG TTTCGGGGCGGCGGC Avi_6253 1245155 - 1246363 + | MFS permease cutC 1246388 - 1247143 + | copper homeostasis protein TERM 1188 1247171 - 1247183 + T 100 -10.5 -4.72272 | overlap 1247180 CTTCCGGTTCAACCT GGCGC GGC GCGCC TTTTTCGTCCAGCGC Avi_6255 1247540 - 1247148 - | acyl-CoA hydrolase Avi_6256 1248359 - 1247700 - | Transcriptional regulator TERM 1189 1249573 - 1249561 - g 83 -7.7 -4.56597 | opp_overlap 1249571 CTGCCGTTGGAAAAA GCTTC CCT GAAGC GTGTCGCGGTTATTG TERM 1190 1249797 - 1249833 + G 80 -4.4 -4.98255 | gap 1, overlap 1249798 1249799 CGTCAATTGTCAGGG TACTCCTGT-TGCAGCG GAAG CGGTGCAGACAGGGGAG TTTTTCTGGTTCGAA Avi_6257 1248589 - 1251060 + | hypothetical protein Avi_6258 1252391 - 1251069 - | two component sensor kinase TERM 1191 1251124 - 1251097 - G 81 -15.6 -2.52464 | opp_overlap 1251085 1251084 CGGGCCTCGAATCCA TCCTGTCGCCCG CTAG CGGGTGACAGGA TGTCGAAGCGGGCAT Avi_6259 1253050 - 1252388 - | two component response regulator TERM 1192 1252429 - 1252449 + g 70 -4 -4.63218 | CAACGCCGCGGACCG TTAGCAAG CGATC CTTGCCAA TTTTCTTGCGCAGCC TERM 1193 1253222 - 1253234 + H 71 -2.6 -4.92314 | ATAAAGGGCAGTCGC GTCG ATAAA CGGC TTTTTCTACGTTCGT Avi_6260 1253311 - 1253571 + | hypothetical protein TERM 1194 1253659 - 1253636 - T 100 -12.4 -5.75945 | ATTGGGCAAAAAAAA GCGCCGCG TTTTGAGG CGCGGCGC TAAAGCAATTCCCGA Avi_6262 1254616 - 1253825 - | hypothetical protein TERM 1195 1253902 - 1253924 + g 74 -7 -4.28361 | overlap 1253894 CCAAGCGCGCCCATT GATGGGCCAT CTG ATGGTCGATC TTTTCATGCAATTGG TERM 1196 1254597 - 1254567 - G 100 -13.3 -4.52589 | gap 1 GGCTCCGACAGAAAA GACCGGGCGCGACA AAAT TGCCGC-CCCGGCC CCCTGATGCATAGCT rhaI 1255946 - 1254654 - | L-rhamnose catabolism isomerase rhaD 1258096 - 1255985 - | rhamnulose-1-phosphate aldolase/alcohol dehydrogenase TERM 1197 1258559 - 1258546 - g 83 -9.5 -4.35091 | AATATCGATAAGAAA CGCGC AATT GCGCG CGCCGCTGTTGAACT Avi_6265 1258297 - 1259109 + | transcriptional regulator DeoR family TERM 1198 1259491 - 1259477 - g 71 -7 -4.15044 | CCTGCTCTGAAGAAA GCTGCG CAG CGCGGC ATCAAGGTGATTTCC rhaS 1259165 - 1260160 + | rhamnose ABC transporter rhamnose-binding protein TERM 1199 1260220 - 1260199 - f 100 -18.7 -3.20991 | opp_overlap 1260195 1260194 1260215 1260216 TCTAAGGCAATCGAA CCCGGCGGC AGCT GCCGCCGGG AACCCTTATCCGTTC Avi_6267 1260267 - 1261802 + | ABC transporter nucleotide binding/ATPase protein Avi_6268 1261812 - 1262813 + | ABC transporter membrane spanning protein TERM 1200 1263024 - 1263014 - g 79 -6.8 -4.67011 | opp_overlap 1263013 1263014 1263022 AATTTCACTGAAAAA GCGA TGA TCGC CTTTGCCATGGCGTT Avi_6269 1262810 - 1263823 + | ABC transporter membrane spanning protein rhaU 1263826 - 1264149 + | L-rhamnose 1-epimerase TERM 1201 1265245 - 1265270 + G 70 -11.9 -2.77899 | overlap 1265242 1265247 CGGCGAGCCTTTATA CGGCGATGATG ACGG CATCGTCGCTG TCGTTGATCGGCGCG Avi_6271 1264146 - 1265552 + | sugar kinase Avi_6272 1265676 - 1266527 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 1202 1266535 - 1266576 + TF 77 -12.4 -2.71712 | gap 1, opp_overlap 1266537 1266574, overlap 1266528 1266534 CGCTTTAAGGTTTAA GACCTTTTTGGGCGGG-CT TTATC GGTCCTGCCCAAAAAGGCC CTTTGCGGGGGCGCA TERM 1203 1266574 - 1266537 - Tf 75 -11.4 -3.06261 | opp_overlap 1266528 1266535 1266534 CTTTAAGGTTTAAGA CCTTTTTGGGCGGG CTTTATCGGT CCTGCCCAAAAAGG CCCTTTGCGGGGGCG TERM 1204 1266702 - 1266718 + TF 90 -4.4 -5.44119 | gap 1, opp_overlap 1266694, overlap 1266694 GAACAGAGCCGGGAG CCGCGCT TTCC AGC-CGG TTTTTTTGCGCTACA TERM 1205 1266871 - 1266855 - gT 83 -10.1 -4.10161 | overlap 1266845 1266843 1266842 CAGGATCTTGGAAAA GATCGCC AGA GGCGACC CCTTGGCAGAGACCG TERM 1206 1267541 - 1267519 - gT 78 -11.2 -3.53012 | opp_overlap 1267519 GGTTTGCGCCTGAAA GCGATGACGG ATT CCGACACCGC TTTCAGGCTCGGTGG TERM 1207 1267519 - 1267541 + GT 73 -9 -3.57792 | opp_overlap 1267519 GGTTTGCGCCTGAAA GCGATGACGG ATT CCGACACCGC TTTCAGGCTCGGTGG TERM 1208 1268316 - 1268330 + GT 70 -10 -3.23447 | overlap 1268314 TTTTGGCACCGGTTT TGCGTC CTT GACGCA TCTTCTGACCGTTCC Avi_6274 1269418 - 1268642 - | hydantoin Racemase Avi_6273 1266820 - 1268709 + | GGDEF family protein Avi_6275 1270261 - 1269443 - | ABC transporter membrane spanning protein (spermidine/putrescine) Avi_6277 1271170 - 1270265 - | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 1209 1270512 - 1270474 - G 85 -10.2 -4.31692 | AAGTGACGACGAAAA TTGTGCCGATAGCCATGC CGG GCTTGGCGAGCGGCAGAA TGACATTGGTGAGGA TERM 1210 1271202 - 1271233 + r 100 -13.8 -4.07868 | overlap 1271205 GTCTTCGGGGCTGCC ATATGTCTTCCCCG CGAA CGGGGAAGACATGG TTTCTATGGATATGA TERM 1211 1271205 - 1271230 + r 100 -17.7 -3.07132 | overlap 1271202 TTCGGGGCTGCCATA TGTCTTCCCCG CGAA CGGGGAAGACA TGGTTTCTATGGATA Avi_6278 1272538 - 1271249 - | ABC transporter substrate binding protein (spermidine/putrescine) TERM 1212 1272509 - 1272521 + g 73 -3.3 -4.81551 | opp_overlap 1272498, overlap 1272498 1272497 1272470 CGAACGGCGGGTCAC GCCGG ATT TTGGC TTTTTGGTATCAGTC Avi_6279 1273690 - 1272566 - | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) Avi_6280 1273920 - 1274630 + | transcriptional regulator GntR family Avi_6281 1274869 - 1275747 + | hypothetical protein TERM 1213 1276430 - 1276454 + G 93 -11.3 -4.60797 | opp_overlap 1276410 1276429 TGGATGTCATGCAAG CGCGGCGTGGC AAC GTGGCGCCGCG TTTTCTATGTGCAGG Avi_6283 1276132 - 1276680 + | DNA-3-methyladenine glycosylase attE 1276745 - 1277401 + | ABC transporter nucleotide binding/ATPase protein attG 1277401 - 1279809 + | ABC transporter membrane spanning protein TERM 1214 1280701 - 1280691 - g 72 -4.6 -4.64861 | overlap 1280692 CGGTGGTAAAACAAA CGCA GGT CGCG GGTCGCACCATGCCA Avi_6286 1279799 - 1280878 + | hypothetical protein TERM 1215 1281749 - 1281729 - g 73 -11.2 -3.33492 | opp_overlap 1281742 1281745 TGACCCATGTGACAA CCTCGATC CAGGC GATCGAGG CAGGCGCGCCGCTTG Avi_6287 1281038 - 1282435 + | ethanolamine ammonia-lyase large subunit Avi_6288 1282432 - 1283187 + | ethanolamine ammonia-lyase small subunit SEQUENCE gi|222147015|ref|NC_011989.1| Agrobacterium vitis S4 chromosome 1, complete genome (length 3726375) Avi_0001 203 - 1024 + | hypothetical protein maf 1056 - 1655 + | septum formation inhibitor protein aroE 1648 - 2508 + | shikimate 5-dehydrogenase TERM 1 3004 - 2993 - g 71 -7.2 -4.11216 | opp_overlap 2992 GCCGGATGCCGAAAA GCGC GCTC GCGC CGATTTTGTGATCGA coaE 2505 - 3092 + | dephospho-CoA kinase dnaQ 3187 - 3897 + | DNA polymerase III epsilon chain TERM 2 3938 - 3922 - T 100 -10.8 -5.60993 | opp_overlap 3922 CCTTCGATAAAAAAA GCCCGG ATCGA CCGGGC TTTTTTTTGCTGAGA TERM 3 3922 - 3938 + T 100 -10.8 -5.86061 | opp_overlap 3922 CCTTCGATAAAAAAA GCCCGG ATCGA CCGGGC TTTTTTTTGCTGAGA secB 4438 - 3977 - | protein-export protein SECB fxsA 5061 - 4528 - | hypothetical protein TERM 4 5308 - 5284 - g 70 -4.9 -4.41494 | overlap 5285 CACTGGCAATGAAAA GCCACCGAAAG ATC CTTTCGCCGGA CGCCCGGACGCTGCA Avi_0009 5183 - 5881 + | Membrane associated transporter protein mltA 5878 - 7023 + | membrane-bound lytic murein transglycosylase Avi_0011 7062 - 7601 + | DNA repair protein Avi_0012 7598 - 7993 + | transcriptional regulator gyrB 8119 - 10554 + | DNA gyrase subunit B TERM 5 10613 - 10576 - T 100 -14.3 -4.87592 | opp_overlap 10582, overlap 10577 10582 TCACAGATAACAAAA TTAAAAGGCCGTGCTTT GCAA AAAGCACGGCCTTTTTC GTGACTCACGTGAAA TERM 6 10612 - 10577 - T 100 -17.8 -3.5147 | opp_overlap 10582, overlap 10576 10582 CACAGATAACAAAAT TAAAAGGCCGTGCTTT GCAA AAAGCACGGCCTTTTT CGTGACTCACGTGAA TERM 7 10582 - 10607 + T 100 -17.7 -4.7497 | opp_overlap 10577 10576 10582 ATAACAAAATTAAAA GGCCGTGCTTT GCAA AAAGCACGGCC TTTTTCGTGACTCAC TERM 8 10607 - 10582 - T 100 -17.7 -4.79384 | opp_overlap 10582, overlap 10577 10576 ATAACAAAATTAAAA GGCCGTGCTTT GCAA AAAGCACGGCC TTTTTCGTGACTCAC Avi_0014 11311 - 10715 - | nitroreductase family protein TERM 9 10756 - 10741 - G 75 -5.4 -4.60041 | gap 1, opp_overlap 10741 ATTTACCCTCAAAAA CCAC-GG ATT CCAGTGG TTTGCGGTCATTGGG TERM 10 12590 - 12577 - g 78 -9.5 -3.9461 | TCTGGTGAAGAACAA CGGCG ATTC CGCCG AAAAGCACCGGGAAT depA 11732 - 13027 + | intracellular PHB depolymerase Avi_0017 13165 - 13611 + | hypothetical protein TERM 11 13657 - 13632 - f 90 -13.3 -3.55563 | opp_overlap 13633, overlap 13633 ATGTGATTTTGCAAA GGCCGAGATCC TTTT GGATCTCGGCT TTTTTTATGGCTCTC TERM 12 13656 - 13633 - f 100 -16.8 -2.73124 | opp_overlap 13633, overlap 13632 TGTGATTTTGCAAAG GCCGAGATCC TTTT GGATCTCGGC TTTTTTTATGGCTCT TERM 13 13633 - 13656 + F 100 -16.8 -5.65177 | opp_overlap 13632 13633 TGTGATTTTGCAAAG GCCGAGATCC TTTT GGATCTCGGC TTTTTTTATGGCTCT TERM 14 14123 - 14090 - g 71 -7.3 -4.23758 | opp_overlap 14114, overlap 14091 AGTGCAGATGGAAAA TGGCGAGCCGGTGAT CCGC ATCAGCGGCCTGCCG GAACACGCCGGTCGT Avi_0018 13722 - 14486 + | hypothetical protein TERM 15 14488 - 14507 + F 81 -10 -3.86283 | overlap 14506 TCGATTTTGACTGAT TTGGCTCG ACTC CGAGCCGA TTTCATGTCACTTCG trpF 14528 - 15202 + | N-(5prime-phosphoribosyl) anthranilate isomerase trpB 15199 - 16419 + | tryptophan synthase beta subunit trpA 16421 - 17260 + | tryptophan synthase alpha subunit TERM 16 17284 - 17324 + F 84 -11.2 -3.83378 | gap 1, opp_overlap 17293, overlap 17286 17290 AAATGGGCTATTGCC TT-GGAAGAAGCGGAGCCC GAGC GGGCTCCACCTCTTCCTGA TTGTCTGTTTTCAGC TERM 17 17286 - 17321 + F 100 -17.6 -2.98489 | opp_overlap 17293, overlap 17284 17290 ATGGGCTATTGCCTT GGAAGAAGCGGAGCCC GAGC GGGCTCCACCTCTTCC TGATTGTCTGTTTTC TERM 18 17290 - 17317 + F 76 -11.2 -3.32333 | opp_overlap 17293, overlap 17286 17284 GCTATTGCCTTGGAA GAAGCGGAGCCC GAGC GGGCTCCACCTC TTCCTGATTGTCTGT TERM 19 17314 - 17293 - f 100 -13.7 -3.61517 | opp_overlap 17290 17286 17284 ATTGCCTTGGAAGAA GCGGAGCCC GAGC GGGCTCCAC CTCTTCCTGATTGTC Avi_0022 17395 - 18315 + | acetyl-coenzyme A carboxyl transferase beta subunit TERM 20 18390 - 18364 - g 77 -12.2 -3.59262 | CCTGACATGCCTAAA GTCGGGAGCAGT TTT ACTGCACCCGGC CCTCAATACGAATTG TERM 21 19549 - 19513 - g 74 -11.6 -3.59979 | gap 1, opp_overlap 19501 CTTGGCTATTTCAAA GC-CTTTGAAGGCCTGG CCAT CCAGGCCTTCACCGTGC CAATCCGCGGCACCG folC 18355 - 19767 + | folylpolyglutamate synthase TERM 22 19960 - 19944 - f 76 -10.9 -3.40403 | opp_overlap 19926 19944 CGTTCGTCAGTACAA TCGATCC ACT GGATCGA TTGTTCGGCTGCGCC TERM 23 19944 - 19960 + F 81 -10.9 -3.65046 | opp_overlap 19944, overlap 19926 CGTTCGTCAGTACAA TCGATCC ACT GGATCGA TTGTTCGGCTGCGCC Avi_0025 20263 - 20913 + | hypothetical protein Avi_0027 21148 - 22152 + | hypothetical protein TERM 24 22350 - 22334 - T 100 -11.5 -5.63504 | overlap 22346 AACCCCACAAAAAAA GCCCGGC AAA ACCGGGC TCCCTCGCATCAGTA trxA 22699 - 22379 - | thioredoxin Avi_0030 23855 - 22899 - | hypothetical protein TERM 25 23922 - 23949 + r 81 -13.4 -2.64243 | GCCCTATTACGGCGA GCGGCCCTCCTT ATAG AGGGAGGGCCGG TGCTGTCGACTGTCG hslU 25336 - 24029 - | heat shock chaperone TERM 26 24787 - 24828 + g 88 -14.4 -3.48395 | opp_overlap 24775 24812 24813, overlap 24788 GAATGCCGACATTGG CCCCCGGCATGCCGGG AATCTCAAAG CCCGGCATGCCGGAGC TTGTCTCCGCAACCT TERM 27 24788 - 24827 + g 87 -17.9 -2.68823 | opp_overlap 24775 24812 24813, overlap 24787 AATGCCGACATTGGC CCCCGGCATGCCGGG AATCTCAAAG CCCGGCATGCCGGAG CTTGTCTCCGCAACC hslV 25934 - 25374 - | heat shock protein hslV TERM 28 26225 - 26238 + G 80 -4.5 -5.02476 | overlap 26226 26232 GGCACTTCGAAGATT TCGAC GGGG GTCGG TTTTTTCGACCATAT hisB 26129 - 26725 + | imidazoleglycerol-phosphate dehydratase TERM 29 27285 - 27300 + G 72 -6 -4.37886 | CCACGACCGACTATG GCGGCC CGAT GACCGC TTTTGTGGGACGTGA hisH 26753 - 27403 + | glutamine amidotransferase hisA 27428 - 28162 + | phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase hisF 28176 - 28970 + | imidazoleglycerol-phosphate synthase cyclase hisE 28983 - 29297 + | phosphoribosyl-ATP pyrophosphohydrolase panK 29303 - 30295 + | pantothenate kinase TERM 30 30407 - 30386 - g 82 -10.1 -4.18488 | gap 1, opp_overlap 30382 30386 30388 30388 ATTGATCCCAACAAA GCCGCGCCGG TTT CCGGCA-GGC GTGTGTTTCTTGGTG TERM 31 30537 - 30551 + G 78 -6.4 -4.66833 | opp_overlap 30537 TGCCCCGGACAGAAT TCGTCT ATG AGGCGA TTTTTACCCTTCAGG Avi_0040 30362 - 30940 + | hypothetical protein Avi_0041 31411 - 30977 - | Peptidyl 1-tRNA Hydrolase TERM 32 31537 - 31560 + r 100 -18.2 -3.56092 | opp_overlap 31537 TGCACCATAGAAAAA GCCCGGCGAT GATC ATCGCCGGGC TTTCCAAAATCGTCA TERM 33 31560 - 31537 - R 100 -18.2 -5.00895 | opp_overlap 31537 TGCACCATAGAAAAA GCCCGGCGAT GATC ATCGCCGGGC TTTCCAAAATCGTCA pckA 33198 - 31588 - | phosphoenolpyruvate carboxykinase TERM 34 32268 - 32278 + g 74 -8.2 -4.25104 | opp_overlap 32268 32267 AGCCATCGTTGAAAT CCGG AAC CCGG TTTTCATCCAGAACG TERM 35 33967 - 33951 - g 73 -12.3 -3.09492 | overlap 33931 CCGGCAATGTCAAGA CTGCTGC CGA GCAGCAG GCCCGCAACCTGGAG chvI 33554 - 34276 + | two component response regulator TERM 36 34295 - 34353 + F 95 -10.2 -4.68919 | overlap 34298 34303 CGCCTGCGGGCATTG CTTGCGGGTTGAGAGCCTGGCAGGTTCA GAT TGAACCAGGCATGCTCTCAATTCTCTTG TTTTCGTTTGTCTTT TERM 37 34298 - 34350 + F 100 -14.9 -4.40882 | overlap 34295 34303 CTGCGGGCATTGCTT GCGGGTTGAGAGCCTGGCAGGTTCA GAT TGAACCAGGCATGCTCTCAATTCTC TTGTTTTCGTTTGTC TERM 38 34303 - 34345 + F 100 -16.4 -3.97437 | overlap 34298 34295 GGCATTGCTTGCGGG TTGAGAGCCTGGCAGGTTCA GAT TGAACCAGGCATGCTCTCAA TTCTCTTGTTTTCGT TERM 39 34606 - 34616 + G 78 -8.2 -4.41548 | GATCAGACGCATCTT CGGC AAT GCCG TTTTCTCCAGTCTGA TERM 40 35260 - 35279 + G 74 -7 -4.34402 | overlap 35261 GCCGGTCCAGCGGTT CCGCGCCG TGCT CGGCGTGC TTTTGCTATCCACCC chvG 34514 - 36286 + | two-component sensor histidine kinase protein TERM 41 36405 - 36428 + G 71 -11.1 -3.21276 | opp_overlap 36403 36402, overlap 36403 CCTGCTGGAAAATGC GCGGCAAAA TGGCCT TTTTGCCGC TCTTGTGGCCGACGA Avi_0046 36283 - 36741 + | hypothetical protein Avi_0047 37102 - 37503 + | PTS system IIA component ptsH 37518 - 37793 + | phosphocarrier protein HPr ahcY 37838 - 39367 + | S-adenosylhomocysteine hydrolase TERM 42 39428 - 39393 - f 100 -17.8 -3.26387 | opp_overlap 39395, overlap 39395 39399 GATATACACAAGATA TAGAAATCGCAGCCTT GACA AAGGCTGCGATTTCTT TTTTTGTTTGCCCCT TERM 43 39426 - 39395 - f 100 -20.4 -3.18514 | opp_overlap 39395, overlap 39393 39399 TATACACAAGATATA GAAATCGCAGCCTT GACA AAGGCTGCGATTTC TTTTTTTGTTTGCCC TERM 44 39395 - 39426 + F 100 -20.4 -5.95539 | opp_overlap 39393 39395 39399 TATACACAAGATATA GAAATCGCAGCCTT GACA AAGGCTGCGATTTC TTTTTTTGTTTGCCC TERM 45 39422 - 39399 - f 100 -15.4 -4.22949 | opp_overlap 39395, overlap 39395 39393 CACAAGATATAGAAA TCGCAGCCTT GACA AAGGCTGCGA TTTCTTTTTTTGTTT TERM 46 39926 - 39959 + G 74 -7.3 -4.26903 | opp_overlap 39919 39922, overlap 39922 AGCGCAAACGATTGC CGTGCCGCAGCTG AATGCGGG CGGCATCGGCACG TTTTCATCCACTGAA TERM 47 40392 - 40405 + G 72 -9.5 -3.73775 | CGTGTTTCCGGGGGG CGGGC CTTT GCCCG TTTCGTGGCGCTCAA Avi_0050 39579 - 42314 + | two component sensor kinase Avi_0051 42311 - 43819 + | hypothetical protein Avi_0053 43973 - 44686 + | nucleotidyltransferase protein addB 44683 - 47871 + | double-strand break repair protein AddB TERM 48 48342 - 48356 + G 78 -9.2 -4.09685 | overlap 48340 CGGTGCTGGATGACC GCGCCG CCT CGGTGC TTTTGGCCGATGCCC TERM 49 50004 - 49979 - g 70 -3.9 -4.56597 | gap 1, overlap 49980 49981 GCTGGGTCGGAAAAA TGGCAGGCGGCC CTT GCCCGTCTGC-A CCGCTATGTGGCCTT TERM 50 51151 - 51133 - g 71 -11.6 -3.21276 | overlap 51131 51134 GCTTGGCGCAGAACA GCGCGCCG TCT CGGCGCGA GTGGACCGAATGGCG TERM 51 51150 - 51134 - g 81 -15.1 -2.52623 | overlap 51133 51131 CTTGGCGCAGAACAG CGCGCCG TCT CGGCGCG AGTGGACCGAATGGC uvrD 47864 - 51412 + | ATP-dependant DNA helicase TERM 52 52025 - 52043 + G 75 -5.9 -4.65895 | overlap 52030 GCGATATCGGCTATC TCCTGCC GGAAG GGCCGGA TTTTTCCGTGACGAC TERM 53 53543 - 53528 - g 78 -9 -4.16016 | GGACGCCGGAAGAAA TCCAGC GCGA GCTGGA TAACAATGCCCAGGG glcB 51760 - 53940 + | malate synthase G TERM 54 54080 - 54059 - T 100 -17.3 -5.64421 | opp_overlap 54059 ACGTGAAACAAAAAA GCCGCCGGA GCGA TCCGGCGGC TTTTTCATGGATGGT TERM 55 54059 - 54080 + T 100 -17.3 -4.75372 | opp_overlap 54059 ACGTGAAACAAAAAA GCCGCCGGA GCGA TCCGGCGGC TTTTTCATGGATGGT Avi_0061 54828 - 54130 - | hypothetical protein TERM 56 54697 - 54736 + g 73 -3.2 -4.80882 | opp_overlap 54717, overlap 54695 54721 GATCTGTGCTGTTTC GACCGAGGCTGGCGCGAC AACA GGCGCGGCCTCAGCGGTC TTTTTGCTGTCGGCT Avi_0062 54930 - 55490 + | hypothetical protein actR 56085 - 55510 - | two component response regulator TERM 57 56212 - 56154 - R 77 -6.1 -4.64657 | gap 2, overlap 56161 56162 56196 GGAAATGCGTAAAAA CGACGAAC--TAGAGCGTTGCTGCGATTC CAT GAAGAGCAGAAACGCTCTAACGTCCGCAG CGTTATTGCGCACTC TERM 58 56203 - 56161 - R 83 -12.8 -3.4158 | overlap 56154 56162 56196 CGTAAAAACGACGAA CTAGAGCGTTGCTGCGATTC CAT GAAGAGCAGAAACGCTCTAA CGTCCGCAGCGTTAT TERM 59 56202 - 56162 - R 84 -14.1 -2.64225 | overlap 56161 56154 56196 GTAAAAACGACGAAC TAGAGCGTTGCTGCGATTC CAT GAAGAGCAGAAACGCTCTA ACGTCCGCAGCGTTA actS 57548 - 56244 - | two component sensor kinase hrpB 60047 - 57585 - | DEAD box-like helicase TERM 60 57777 - 57801 + g 78 -6.4 -4.56597 | gap 1 CAGCAGCAGCGGCAA CCGTCC-GCCG CCAA TGGCCGGATGG TTTTTAAGGCCAAAC TERM 61 58562 - 58532 - G 78 -8.9 -4.20531 | gap 1, opp_overlap 58548 GATAGGCATGCAAAA GCAG-CACTCCGGC CAGC GCCGGGGTGGCAGC AGCCTGACGTTTCGG TERM 62 59328 - 59314 - G 77 -10 -3.90291 | AGCGGTGCAATCAAA GTTGCC GCT GGCAAC CGGCCCTCCAGCCGC TERM 63 59344 - 59359 + g 71 -10.4 -3.57144 | CGGCCCTCCAGCCGC TCCGCC ACGC GGCGGA TTTCGGCCTGACCGG TERM 64 59628 - 59587 - G 77 -11.8 -3.59583 | gap 3, overlap 59590 ACAATCAGCCGCAAA TCATCGCGC-AGCGC-GGATT GGC AATCCAGCGCCAGCGCGA-GA CCAAAATCCGCATCC TERM 65 59626 - 59590 - G 82 -14.6 -2.91873 | gap 2, overlap 59587 ATCAGCCGCAAATCA TCGCGC-AGCGC-GGATT GGC AATCCAGCGCCAGCGCGA GACCAAAATCCGCAT arcB 61086 - 60130 - | ornithine cyclodeaminase TERM 66 62301 - 62281 - R 74 -9.7 -3.5594 | opp_overlap 62280 62277, overlap 62272 AAGTCAGGGGTGAAA TCCCGCAGC TCA ACTGCGGAA CTGCCTTTGATACTG TERM 67 62678 - 62691 + r 82 -8.1 -4.54727 | overlap 62671 GACATCCTGTGACCG CCACG GAGA CGTGG TTTTCCTTTCGGGGA TERM 68 63235 - 63248 + r 72 -5.3 -4.57882 | GACTCCTTTTTAAGT GGTTT TGGC AAACC TTTCTTGTTCTTACG TERM 69 63983 - 64006 + r 76 -11 -3.29161 | opp_overlap 63981, overlap 63981 63984 64002 AGAAAAAATAAGGTT TGCACCGTTC TTAT GAACGGTGCC TGTTCTGGTACATTG TERM 70 63984 - 64005 + r 90 -14.5 -2.57014 | opp_overlap 63981, overlap 63983 63981 64002 GAAAAAATAAGGTTT GCACCGTTC TTAT GAACGGTGC CTGTTCTGGTACATT TERM 71 64180 - 64196 + r 70 -10.9 -2.81464 | overlap 64182 GGATCGTTCGTTGTT CATCGTC TTT GACGATG TCTGATGAATGATCA TERM 72 64780 - 64767 - R 80 -5.2 -4.88163 | TGAAGACAAAACAAA CCCC GAGTGT GGGG CGATAGGGTTCGGCA TERM 73 65960 - 65944 - R 81 -9.4 -4.08546 | ATGAGTAACGATAAA GGGGGT GAGAG ACCCCC TCGCCGAAAGACCAA TERM 74 66348 - 66335 - R 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 75 67439 - 67463 + r 81 -12.9 -2.54801 | overlap 67437 67436 67439 CGTTCTCATTGACCA TGCTCATCGAC TTC GTCGATGAGCC ATCTGTTTAGCGCTC TERM 76 67439 - 67464 + r 77 -11.3 -3.25204 | gap 1, overlap 67439 67437 67436 CGTTCTCATTGACCA TG-CTCATCGAC TTC GTCGATGAGCCA TCTGTTTAGCGCTCA TERM 77 67627 - 67615 - R 100 -10.5 -4.97957 | overlap 67617 CACACAATAAGAAAA CGGGC AAT GCCCG CCAGCTTCTCATCAA TERM 78 67836 - 67824 - R 71 -9.1 -3.51934 | overlap 67822 CTTCTCTCATAAACA TCGGC CCC GCCGA AAACATAAAGGGTCG TERM 79 67846 - 67863 + r 91 -12.7 -3.73068 | opp_overlap 67846 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 80 67863 - 67846 - R 100 -12.7 -4.45168 | opp_overlap 67846 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 81 67999 - 68017 + r 93 -11.7 -4.26189 | opp_overlap 67991 67999 ATATCAATACGATAA GCCCTCC CAAAA GGAGGGC TTTTGGCGTTTCTGG TERM 82 68017 - 67999 - R 86 -12.4 -3.53933 | opp_overlap 67999, overlap 67991 ATATCAATACGATAA GCCCTCCC AAA AGGAGGGC TTTTGGCGTTTCTGG TERM 83 68345 - 68305 - R 86 -6.8 -4.93296 | overlap 68313 CCATGAGTAGAAAAA TCGCCAAATGACTTGGCG GTGGT CGCCAAGCCATCCAGAGT AGCAGTGTCAGGGGG TERM 84 68337 - 68313 - R 88 -12.2 -3.69455 | overlap 68305 AGAAAAATCGCCAAA TGACTTGGCG GTGGT CGCCAAGCCA TCCAGAGTAGCAGTG Avi_0070 69735 - 68353 - | MFS permease TERM 85 69711 - 69699 - G 71 -10.5 -3.61398 | opp_overlap 69688, overlap 69700 CTTGCGGGTCAACAA GCGGC GCC GCCGC CGTGATCCGTTGTTC TERM 86 69950 - 69986 + r 70 -6 -4.1822 | gap 1, opp_overlap 69959, overlap 69953 TGGAATGCCCCCGCC TGA-TACGAACGATCAT TGAA ATGACCGTTCGTATTCC TTTGTTGCCCTCAAG TERM 87 69953 - 69982 + r 88 -12.3 -3.6914 | opp_overlap 69959, overlap 69950 AATGCCCCCGCCTGA TACGAACGATCAT TGAA ATGACCGTTCGTA TTCCTTTGTTGCCCT dapA 71003 - 70056 - | dihydrodipicolinate synthase TERM 88 71058 - 71083 + H 70 -6.1 -4.22407 | opp_overlap 71057, overlap 71049 GACCGGCGATAGGAT CGTTAATGGGA ACGT TCCCACTATCG TTTCTGATTTTACTG Avi_0072 71167 - 72198 + | transcriptional regulator LacI family Avi_0073 73248 - 72244 - | hypothetical protein TERM 89 72696 - 72653 - G 71 -13.2 -2.5547 | gap 1, opp_overlap 72648, overlap 72652 ATTCCCGAGACCAAT GCCGCCGCATGCCCGCCAA TTGCGCG TTGGCGGGCATT-GGCGGT CTCACCGGTTCCATC TERM 90 73420 - 73458 + r 82 -11.8 -3.54129 | opp_overlap 73426, overlap 73428 ATTGGCAACATGCGT TGCAAATAGCCGGGTTTT GGA AAAACCCGGCTATTAACC TTTGGAGACAATCTC TERM 91 73452 - 73426 - R 100 -18.2 -3.54307 | opp_overlap 73420 73428 AACATGCGTTGCAAA TAGCCGGGTTTT GGA AAAACCCGGCTA TTAACCTTTGGAGAC TERM 92 73428 - 73450 + r 100 -16.4 -3.12668 | opp_overlap 73426, overlap 73420 CATGCGTTGCAAATA GCCGGGTTTT GGA AAAACCCGGC TATTAACCTTTGGAG idhA 74465 - 73476 - | myo-inositol 2-dehydrogenase TERM 93 73700 - 73710 + g 70 -4.6 -4.46212 | CGATCTCGATGGAGA CCGG GCG CTGG TTTTCTGCTGCGACA TERM 94 74002 - 73967 - G 71 -6.8 -4.10657 | gap 1, overlap 73968 TCATATCGCGGAAAA TGCCGCCG-GAGACTTT GAT ATAGTCTGGCGGCGGCG CACCGGGATCACGAC TERM 95 74435 - 74453 + g 74 -6.7 -4.44448 | gap 1 CTTTGCCGATACGGC CTGCGCCC AGAA GGGC-CAG TTTCTTTACCATCGT TERM 96 74887 - 74898 + G 80 -4.4 -4.97402 | CTTTATGCGATTTTG CCAA ATAT TTGG TTTTTCTGGATTTTC TERM 97 75209 - 75195 - g 83 -5.6 -5.00884 | opp_overlap 75195 ATGCCTTTGAAAAAA TGGCAG TTC CGGCCA TGTTACACAGTGGCG Avi_0075 74678 - 75511 + | transcriptional regulator RpiR family TERM 98 75989 - 75971 - g 71 -7.3 -4.11216 | TTTCTACCGCGAAAA CTGCGCC GACAT GGCGCTG TGCGAGGATGATATT TERM 99 76310 - 76275 - g 75 -9 -3.97307 | overlap 76301 GGCACGGAAGAAGAA TTCCACATTGCCGGTG GCAG CACCAACACGGTGGAA GCACTGCGGGCCGTG iolC 75639 - 77543 + | myo-inositol catabolism IolC protein TERM 100 77656 - 77608 - f 71 -2.3 -5.0065 | opp_overlap 77609, overlap 77603 77609 77610 GATGCATAAACAAAA GGCTAGTGCACTATAGCATGAAC GAA GTGAATGCGTCAGTGCACTAGGA TTTCAGGGAGAGAGA iolD 77675 - 79498 + | acetolactate synthase TERM 101 79759 - 79745 - g 76 -7 -4.43681 | CATTGAAGACGAAAA GGCGGC GAT GCAGCC TGCCCTCGATCTGTT TERM 102 80190 - 80168 - g 74 -7.6 -4.25104 | GGTGCGCGATGAAAA GCTCTCCTTC CTT GAAGGCGTGC GTCGTGGCGTTTTCA iolE 79500 - 80402 + | hypothetical protein Avi_0079 80511 - 80717 + | hypothetical protein iolB 80714 - 81532 + | hypothetical protein Avi_0081 82008 - 81529 - | hypothetical protein TERM 103 81701 - 81732 + g 87 -9.6 -4.56597 | opp_overlap 81701 TTATCTATTAGAAAA GACAATAGTGCT GCGTCATA AGCGCTATTGTC TTTTTGACACACAGC TERM 104 81732 - 81701 - G 76 -7.4 -4.4767 | opp_overlap 81701 TTATCTATTAGAAAA GACAATAGTGCT GCGTCATA AGCGCTATTGTC TTTTTGACACACAGC TERM 105 82027 - 82051 + r 72 -7.7 -3.90328 | opp_overlap 82027 CCACCTCAGATTACA GGGATTGCCCG ATC CTGGCTGTCCC TTTCTGGCCATTATC Avi_0082 82423 - 82022 - | hypothetical protein TERM 106 82667 - 82688 + G 72 -8.7 -3.83205 | gap 1 CCAGGATGTGGCGAC GCTGTCGCGC CGT GCG-GACGGC TTTGATCTGACGGAT TERM 107 82931 - 82919 - g 72 -4.8 -4.56597 | GCTTCTGGCGAAAAA CAGC CGGTC GCTG ATGGGTTTCCTGTCG TERM 108 83202 - 83216 + G 70 -4.2 -4.64766 | overlap 83197 GACACGCTCACTCCC GCCC AGACCGG GGGC TTTTTCGCCTATGAC csgA 82554 - 83252 + | C factor Avi_0084 83320 - 83874 + | hypothetical protein TERM 109 84288 - 84276 - g 71 -10.5 -3.53012 | opp_overlap 84276 GTGGCGCGCGGCAAA GGCCG GAT CGGCC TTGTCGGTTCGGTCT idnO 83874 - 84644 + | gluconate 5-dehydrogenase TERM 110 84673 - 84692 + T 86 -9.2 -4.41494 | opp_overlap 84675, overlap 84675 TGTCATAACGTGAAA AAGGGGGC CTTC GCCCCCTC TTTTGATTGAAGATC TERM 111 84690 - 84675 - T 100 -11.8 -4.6902 | opp_overlap 84673 84675 TCATAACGTGAAAAA GGGGGC CTTC GCCCCC TCTTTTGATTGAAGA TERM 112 84675 - 84690 + T 88 -11.8 -3.8125 | opp_overlap 84675, overlap 84673 TCATAACGTGAAAAA GGGGGC CTTC GCCCCC TCTTTTGATTGAAGA Avi_0086 85928 - 84714 - | cyclopropane-fatty-acyl-phospholipid synthase Avi_0087 86728 - 85925 - | hypothetical protein Avi_0088 88032 - 86725 - | amine oxidase flavin-containing TERM 113 86877 - 86867 - G 74 -6.8 -4.25848 | opp_overlap 86876 AAGCCGCTACCAAAA TGCG CAC CGCA GAACCACGTCCTGTT Avi_0089 88139 - 88897 + | RNA polymerase sigma subunit protein Avi_0090 88897 - 89589 + | anti sigma factor protein TERM 114 89764 - 89712 - g 71 -11.1 -3.28712 | opp_overlap 89712 89710 GCTGGGTTTTTACAA GTCCCGCATCGGTGATATGATGCGG GAT CAGCCCAATTTCACCGCTGCGGGCC TGTTCTATCTATTTT Avi_0091 89617 - 90018 + | hypothetical protein glpR 90102 - 90872 + | transcriptional regulator DeoR family TERM 115 91806 - 91828 + G 74 -13.5 -2.58861 | overlap 91805 TGAGACGGATTTCAC CCTGATCGG CACGA CCGATCAGG ATTATCAAGGTGATC glpD 90949 - 92499 + | glycerol-3-phosphate dehydrogenase Avi_0095 92657 - 93760 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_0096 93764 - 94858 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_0097 94855 - 95742 + | ABC transporter membrane spanning protein (sugar) Avi_0098 95833 - 96558 + | ABC transporter membrane spanning protein (sugar) Avi_0099 96572 - 96853 + | hypothetical protein TERM 116 98190 - 98175 - g 75 -5.4 -4.65916 | opp_overlap 98175 TTGACGTGAAGAAAA GCCAGA CCGG TCTGAC TTTCATCCGTCAGTC Avi_0100 96896 - 98620 + | hypothetical protein TERM 117 98629 - 98670 + T 88 -12.3 -3.61398 | opp_overlap 98625 98627 98631 98634, overlap 98631 GAAGTAAGAAACATC AATGATCGATGCCGCGCAT CATG ATGCGCGGCATCGGAAATG TTCTTCACCGCAGCA TERM 118 98668 - 98631 - T 86 -12.7 -3.54984 | opp_overlap 98629 98631, overlap 98625 98627 98634 AGTAAGAAACATCAA TGATCGATGCCGCGCAT CATG ATGCGCGGCATCGGAAA TGTTCTTCACCGCAG TERM 119 98631 - 98668 + T 100 -14.9 -3.38812 | opp_overlap 98625 98631 98627 98634, overlap 98629 AGTAAGAAACATCAA TGATCGATGCCGCGCAT CATG ATGCGCGGCATCGGAAA TGTTCTTCACCGCAG TERM 120 98665 - 98634 - T 100 -18.8 -2.89094 | opp_overlap 98631 98629, overlap 98625 98631 98627 AAGAAACATCAATGA TCGATGCCGCGCAT CATG ATGCGCGGCATCGG AAATGTTCTTCACCG TERM 121 98698 - 98729 + T 100 -17.4 -3.04558 | opp_overlap 98703, overlap 98703 GCAAAATACGGTACA AAAAACGCCCGGCA ATGT TGCCGGGCGTTTTA TCTATATCATGCTTT TERM 122 98703 - 98724 + T 100 -17.3 -4.65446 | opp_overlap 98703, overlap 98698 ATACGGTACAAAAAA CGCCCGGCA ATGT TGCCGGGCG TTTTATCTATATCAT TERM 123 98724 - 98703 - T 100 -17.3 -5.26918 | opp_overlap 98703 98698 ATACGGTACAAAAAA CGCCCGGCA ATGT TGCCGGGCG TTTTATCTATATCAT cycM 99331 - 98774 - | cytochrome c TERM 124 99126 - 99094 - G 71 -7.6 -4.08767 | opp_overlap 99117 TGCATTTCTTGAAAA TGGCCTCGCCAGCC TTGAC GTCTGCCGATGCCA GCAGTTCCGCAATCG TERM 125 99965 - 99978 + G 70 -3.7 -4.64861 | opp_overlap 99965 99966, overlap 99950 99966 GCCGCTGTCGGACAA TCGCC TGCG GGCGC TTTATTTTACCCGCG kdsB 99408 - 100238 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase pheA 100306 - 101103 + | prephenate dehydratase TERM 126 101120 - 101138 + T 81 -12.4 -3.2614 | opp_overlap 101120 CATAGATTGGAACAA TGGCGGCG GGG TGCCGCCA TTGCTCTGCGCACTC TERM 127 101138 - 101120 - T 85 -11.7 -3.67558 | opp_overlap 101120 CATAGATTGGAACAA TGGCGGC GGGGT GCCGCCA TTGCTCTGCGCACTC TERM 128 101170 - 101188 + T 88 -8.8 -4.63527 | opp_overlap 101170 ATATGTCTGCGAATA GCCGATCT TGT AGAGCGGC TTTTTCGAATCATGC Avi_0107 103122 - 101152 - | beta-glucosidase protein TERM 129 101986 - 102004 + g 74 -8 -4.14392 | CGTATCGGGCCGGAT GATCGGCG TGT CGCCGGGC TTTTCGCCATTCAGG Avi_0108 104377 - 103412 - | mutT/nudix family protein TERM 130 103692 - 103703 + g 74 -7.2 -4.26079 | TCCTCATAGGTCTCG CGCC GCAC GGCG TTTTCGATGGTTTCC Avi_0109 104817 - 104374 - | hypothetical protein TERM 131 105922 - 105946 + G 71 -10 -3.60792 | gap 1 CTGTTTGGCCATATC GTGCT-CGGCG ATGT CGCCGCAGCGC TTTCGGAATTCAACA dnaX 105085 - 106980 + | DNA polymerase III subunits gamma and tau Avi_0111 107080 - 107403 + | hypothetical protein TERM 132 107451 - 107433 - T 85 -11.7 -3.60792 | opp_overlap 107433 TTCCGAATTCGTAAA GGCGAGG TCATT CCTCGCC TTTTTCCGTCTTGCC TERM 133 107433 - 107451 + T 100 -11.7 -4.74706 | opp_overlap 107433 TTCCGAATTCGTAAA GGCGAGG TCATT CCTCGCC TTTTTCCGTCTTGCC Avi_0112 107763 - 107440 - | hypothetical protein Avi_0113 107934 - 108122 + | hypothetical protein Avi_0114 108696 - 108172 - | acetyltransferase protein Avi_0115 109297 - 108713 - | transcriptional regulatory protein TERM 134 109520 - 109500 - H 72 -5.3 -4.51378 | ATTGAGATCAGAAAA CCGCAAATC GAG GAAATGCGG CCGAAGATTACCGTC ftsZ1 109515 - 110468 + | cell division protein lepA 110502 - 112379 + | GTP-binding protein LepA TERM 135 112441 - 112416 - T 100 -17.7 -4.31085 | opp_overlap 112416 TATATCAATGCAAAA GGCGGAAAACC GGGA GGTTTTCCGCC TTTTTTGTGAGAAAA TERM 136 112416 - 112441 + T 100 -17.7 -5.24129 | opp_overlap 112416 TATATCAATGCAAAA GGCGGAAAACC GGGA GGTTTTCCGCC TTTTTTGTGAGAAAA rnd 113091 - 112465 - | ribonuclease D Avi_0122 114716 - 113190 - | sulfatase protein TERM 137 114252 - 114277 + g 71 -8.2 -4.08216 | gap 1 CTGATGGAGTTCGCG CCCGG-GCCGC ACGCC GCCGCGCCGGG TTTTCAGCCAGCTCA Avi_0125 115156 - 114968 - | hypothetical protein TERM 138 115212 - 115244 + H 100 -13.5 -4.3208 | opp_overlap 115206 115214 GCCGATCAAGTTCAA GAGCCCGACGC ATCCTCCTCCC GCGTCGGGCTC TTTTGCGTTCTGGCC TERM 139 115242 - 115214 - H 72 -11 -3.10464 | opp_overlap 115212, overlap 115206 CGATCAAGTTCAAGA GCCCGACGCA TCCTCCTCC CGCGTCGGGC TCTTTTGCGTTCTGG noeK 115395 - 116840 + | phosphomannomutase TERM 140 117132 - 117142 + G 71 -8.2 -4.08394 | overlap 117131 GGGTCGCCTATTCCT GCGC CTC GCGC TTTTCCCAGCAATAT Avi_0127 117038 - 117499 + | Acyl-Coa thioester hydrolase protein TERM 141 117661 - 117686 + G 76 -12.5 -3.15663 | TCCTGCTGATTTTTT CCGGCTGGGCG CTGG TGCGCAGCCGG TTCCTGAACGTGGAT TERM 142 117786 - 117796 + G 72 -4.6 -4.62475 | CAGGCTGATTTTCAG GGTG CAT CGCC TTTTCGTTTGTGGAT TERM 143 117855 - 117870 + G 79 -6.8 -4.56597 | TGGACCATCGGCCAT CTCGTG GCGA CACGGG TTTTTGGCCGCGACC Avi_0128 117612 - 118559 + | permease Avi_0130 120830 - 118608 - | hypothetical protein TERM 144 120062 - 120082 + g 71 -10.3 -3.60296 | opp_overlap 120074 GTTCGGCTCGCGGTT GCGCGGTAG AGA CCGCCGCGC TTTGCGCTGCGAGTG TERM 145 121450 - 121464 + G 85 -11.4 -4.02132 | overlap 121459 TGGCACTATATTCTC TCCGCC CAT GGCGGA TTTCTGCCTTTGCGC TERM 146 121488 - 121503 + G 75 -10.4 -3.67597 | opp_overlap 121485 TTTGCGCATAGAGGC GCTGCC AGAG GGCAGC TTCTTGCATCGCGGC Avi_0131 121171 - 122589 + | Nicotinic acid phosphoribsyltransferase protein Avi_0132 123035 - 122643 - | hypothetical protein TERM 147 123221 - 123209 - H 84 -10.5 -3.80551 | GAAATACTGATGAAA CCGGC ATT GCCGG AAAGATATATTTTAC Avi_0134 123358 - 123717 + | hypothetical protein TERM 148 124011 - 123988 - g 95 -13.8 -4.2704 | GTCAGCATGAAGAAA CTGGCCGCCG CCAT CGGCGGCAAG CATGCCGCGATGATG TERM 149 124109 - 124096 - g 80 -2.3 -5.24129 | overlap 124097 TTCGGTCAGAAAAAA TCGGT GCCG ACCGT GATCGAGCTCTCGGC Avi_0136 123766 - 124239 + | hypothetical protein ampS 124437 - 125687 + | aminopeptidase TERM 150 125729 - 125691 - T 100 -14.6 -4.08692 | opp_overlap 125681 125667 125696 125697 GAATGGGCCTGAAAA TGCATTCGGCCTGCGTTT GAT AAACGCAGGCCGGTTTCA TCGAAATAGAGACCC TERM 151 125696 - 125724 + T 100 -19.7 -3.73775 | opp_overlap 125691, overlap 125681 125667 125697 GGCCTGAAAATGCAT TCGGCCTGCGTTT GAT AAACGCAGGCCGG TTTCATCGAAATAGA TERM 152 125697 - 125723 + T 100 -21 -2.84051 | opp_overlap 125691, overlap 125681 125667 125696 GCCTGAAAATGCATT CGGCCTGCGTTT GAT AAACGCAGGCCG GTTTCATCGAAATAG TERM 153 125767 - 125742 - T 85 -13.3 -3.20029 | overlap 125738 125736 125743 TCATCGAAATAGAGA CCCGCGCACCA AATG TGGTGCGCGAA AGTCGTCATAAATTT TERM 154 125766 - 125743 - T 89 -14.6 -2.51535 | overlap 125742 125738 125736 CATCGAAATAGAGAC CCGCGCACCA AATG TGGTGCGCGA AAGTCGTCATAAATT Avi_0138 126040 - 125849 - | hypothetical protein TERM 155 126026 - 126040 + g 70 -4.2 -4.67943 | overlap 126018 126016 CTCGGCTGCAAGCTG TTGCTG TTC CTGCAA TTTTGTCTGTTCGCG TERM 156 126254 - 126268 + r 72 -7.1 -4.18697 | CCAGTTGTAGATAGG GCCTG CAAAT CAGGC TTTTCGGGTCGTTTT Avi_0140 126529 - 126263 - | hypothetical protein TERM 157 126831 - 126851 + r 76 -11.1 -3.38316 | opp_overlap 126831 GCAGGCAATAAAAAA GGCCAGGCA AAC TGCCTGACC TTGGTTGGATCATGC TERM 158 126851 - 126831 - R 100 -13.3 -5.4833 | opp_overlap 126831 GCAGGCAATAAAAAA GGCCAGGCA AAC TGCCTGACC TTGGTTGGATCATGC cspA 127140 - 126916 - | cold shock protein xseA 129081 - 127450 - | exodeoxyribonuclease VII large subunit Avi_0147 131370 - 129493 - | hypothetical protein TERM 159 130722 - 130667 - G 76 -14 -2.79302 | AGCAGGGCGACGATA GCGCAGGTCG-TGGCAATCAGCGGGG TGGTCT CCGCGCCGATGGCCAGCG-CCAGCGC CGCCGCCGCACCAGC TERM 160 131388 - 131399 + H 70 -7.2 -4.08767 | GTATTTCCGGTTGTT CGGG GCCT CCCG TTTTGGAGGGATGCG exoA 131531 - 132535 + | succinoglycan biosynthesis protein Avi_0149 132532 - 132906 + | GtrA family protein Avi_0150 133912 - 132926 - | oxidoreductase Avi_0151 134057 - 135010 + | oxidoreductase Avi_0152 135947 - 135057 - | transcriptional regulator TERM 161 135300 - 135320 + g 93 -11.2 -4.66833 | AACATCAGGCACATC CACGGCAA TCTGC TTGCCGTG TTTTTCCAATTCCCA TERM 162 135577 - 135544 - G 71 -11.1 -3.21276 | opp_overlap 135546, overlap 135542 135545 CCCTTTTCGACAATA TCCTCGAACTGATCA TTGG TGATCAGTTCGAGTT GGATATCCGGATAGA TERM 163 135576 - 135545 - G 78 -14.6 -2.52623 | opp_overlap 135546, overlap 135544 135542 CCTTTTCGACAATAT CCTCGAACTGATCA TTGG TGATCAGTTCGAGT TGGATATCCGGATAG TERM 164 135546 - 135575 + g 100 -18.1 -3.12668 | opp_overlap 135545 135544 135542 CTTTTCGACAATATC CTCGAACTGATCA TTGG TGATCAGTTCGAG TTGGATATCCGGATA Avi_0153 136050 - 137051 + | aldo-keto reductase TERM 165 137043 - 137029 - T 77 -2.8 -5.03314 | GCTATCCCGAAAAAA TGGC GGCGATG GCCA ATAAGTAACCAAATC TERM 166 137104 - 137075 - T 100 -16.5 -5.252 | CATCGCCATAAAAAA TCTCCCCGGCATA GGGT TTTGCCGGGGAGA TGAAGACCGTAGACG Avi_0154 137698 - 137126 - | hypothetical protein Avi_0155 138480 - 137863 - | hypothetical protein recR 138537 - 139142 + | DNA recombination protein mltB 139194 - 140450 + | lytic murein transglycosylase TERM 167 140450 - 140489 + T 91 -9.3 -4.67755 | opp_overlap 140456, overlap 140456 GGCGAAATTGAAGTA AGAAAATGCCGCCGAGA CAGGGA TCTCGGCGGCATTTCGA TTTTTACATCAATGT TERM 168 140456 - 140483 + T 100 -17.1 -4.00407 | opp_overlap 140456, overlap 140450 ATTGAAGTAAGAAAA TGCCGCCGAGA CAGGGA TCTCGGCGGCA TTTCGATTTTTACAT TERM 169 140483 - 140456 - T 100 -17.8 -4.79174 | opp_overlap 140450 140456 ATTGAAGTAAGAAAA TGCCGCCGAGAC AGGG ATCTCGGCGGCA TTTCGATTTTTACAT Avi_0158 143930 - 140493 - | Hemolysin-type calcium-binding protein TERM 170 142060 - 142078 + g 75 -8.9 -4.01101 | ACATAGGTGTCATCT CCTTTGC CGCCT GCAAAGG TTATTGTTGAGTTTG TERM 171 144322 - 144364 + r 100 -14.3 -4.67755 | gap 1, opp_overlap 144319 144316, overlap 144323 144327 AAATCAAATTGACGC AGGAGCTTGTAGCCGGGATG AAAG CATCCCGGCTACAAG-TCGA TTTTTACATCAATGT TERM 172 144323 - 144363 + r 100 -17.8 -3.3993 | gap 1, opp_overlap 144319 144316, overlap 144322 144327 AATCAAATTGACGCA GGAGCTTGTAGCCGGGATG AAAG CATCCCGGCTACAAG-TCG ATTTTTACATCAATG TERM 173 144327 - 144360 + r 100 -24.1 -2.85361 | opp_overlap 144319 144316, overlap 144323 144322 AAATTGACGCAGGAG CTTGTAGCCGGGATG AAAG CATCCCGGCTACAAG TCGATTTTTACATCA Avi_0160 148540 - 144368 - | Hemolysin-type calcium-binding protein Avi_0161 148858 - 149907 + | hypothetical protein TERM 174 149933 - 149975 + T 70 -3.9 -4.67755 | gap 1, overlap 149934 149938 AAATCAAATTGACGC AGGAGCAGGTGGCCGGGGCG AAAG CACCCCGGCCACACG-TCGA TTTTTACATCAATGT TERM 175 149938 - 149971 + T 86 -13.7 -2.85361 | overlap 149934 149933 AAATTGACGCAGGAG CAGGTGGCCGGGGCG AAAG CACCCCGGCCACACG TCGATTTTTACATCA Avi_0162 152480 - 149979 - | Hemolysin-type calcium-binding protein Avi_0163 154192 - 152564 - | MFS permease TERM 176 153512 - 153500 - G 78 -3.3 -5.11112 | AAAGCCGAAGAAAAA GCCGC GAA ACAGC ACTTTCATCAAGTTG TERM 177 154338 - 154352 + H 72 -6.4 -4.41206 | opp_overlap 154338 ACATCTGCGTTTAAA GGCGAT TGG ATCGTC TTTTCTGAAATGCTT TERM 178 154446 - 154423 - H 70 -10.2 -3.26471 | opp_overlap 154423, overlap 154405 TGATCGCCAGATGAA GAGTGGGCCC GCAA GGACCCGCTC TTTTTTGTTGGCGAT TERM 179 154423 - 154446 + H 100 -10.2 -5.45652 | opp_overlap 154405 154423 TGATCGCCAGATGAA GAGTGGGCCC GCAA GGACCCGCTC TTTTTTGTTGGCGAT Avi_0164 154495 - 155109 + | hypothetical protein nusA 155168 - 156784 + | N-utilization substance protein A TERM 180 157123 - 157143 + G 87 -12.5 -3.86346 | opp_overlap 157122 157123 GCGGGAATGATGAAC CTGGCGCGC AAG GCGGGCCAG TTTGTAACCGGGTCG TERM 181 157143 - 157123 - g 71 -12.5 -2.56164 | opp_overlap 157123, overlap 157122 GCGGGAATGATGAAC CTGGCGCGC AAG GCGGGCCAG TTTGTAACCGGGTCG Avi_0168 156784 - 157479 + | hypothetical protein TERM 182 158287 - 158256 - g 72 -8.6 -3.85698 | gap 1, overlap 158257 CTCCGGTGGCAGAAA CGCCACGCGCCGCCG ATC CAGCGCCCCGTG-CG CCATCGCCTGCTGGT infB 157583 - 160363 + | translation initiation factor IF-2 TERM 183 160381 - 160408 + F 100 -16.4 -3.06492 | opp_overlap 160385, overlap 160385 AGCGGTTACCATCCA GAAAGGCCGCTT TTCG GAGCGGCCTTTC TGTTCACATACGTGA TERM 184 160385 - 160404 + F 93 -11.4 -4.20368 | opp_overlap 160385, overlap 160381 GTTACCATCCAGAAA GGCCGCTT TTCG GAGCGGCC TTTCTGTTCACATAC TERM 185 160404 - 160385 - f 86 -10.7 -3.93695 | opp_overlap 160385 160381 GTTACCATCCAGAAA GGCCGCT TTTCGG AGCGGCC TTTCTGTTCACATAC rbfA 160528 - 160941 + | ribosome-binding factor A truB 160946 - 161875 + | tRNA pseudouridine synthase B TERM 186 161854 - 161864 + F 77 -8.2 -4.14511 | overlap 161851 CGAGGGCGAGTTTCG CCCG AAG CGGG TTTTCGCCTGAAATT TERM 187 161921 - 161950 + F 85 -13.5 -3.19192 | opp_overlap 161910, overlap 161923 161948 GAAAGCCCCATGCTT GCGGCGCGGTCAG GTGG CTGAGCGCGCCTC TTCCCTTGGCTGCGG TERM 188 161923 - 161948 + F 95 -14.7 -3.1585 | opp_overlap 161910, overlap 161921 AAGCCCCATGCTTGC GGCGCGGTCAG GTGG CTGAGCGCGCC TCTTCCCTTGGCTGC rpsO 162080 - 162349 + | 30S ribosomal protein S15 TERM 189 162355 - 162393 + F 100 -11.8 -4.56775 | gap 2, opp_overlap 162354 162353 162351 162380 162383, overlap 162358 TCGCCGCTAAAGACT GGACCGGCGGG--CTTCC GATAA GGAAGGACCCGCCGGTAC TTTTTCCGGGGCGCT TERM 190 162358 - 162390 + F 81 -12.1 -3.23708 | gap 2, opp_overlap 162354 162353 162351 162380 162383, overlap 162355 CCGCTAAAGACTGGA CCGGCGGG--CTTCC GATAA GGAAGGACCCGCCGG TACTTTTTCCGGGGC TERM 191 162511 - 162495 - f 88 -10.9 -4.09864 | opp_overlap 162493 ATGGATCCGGGAAAA TCCATGC GAT GCATGGA GATGTTGCAACTTGC TERM 192 162588 - 162560 - f 74 -7.5 -4.08692 | overlap 162562 CAAGGCGTTGCAAAA CAGGCAGT-CCGG ATGGG CCGGTACTGCC-G ACGACAACCGATGGC TERM 193 162587 - 162562 - f 81 -11.2 -3.63922 | gap 1, overlap 162560 AGGCGTTGCAAAACA GGCAGT-CCGG ATGGG CCGGTACTGCC GACGACAACCGATGG TERM 194 162873 - 162831 - g 77 -12.1 -3.60792 | gap 2, opp_overlap 162841 162841 162862 CGCTGAAGCTGGAAA CCGGCAAGATC-GC-CCGTCA GGC TGACGGCGCCGTTCTCGCCAG CTACGGCGAGACCGT TERM 195 162862 - 162887 + G 75 -10.4 -3.78934 | opp_overlap 162831, overlap 162841 TCAGGCTGACGGCGC CGTTCTCGCC AGCTAC GGCGAGACCG TTGTTCTGGCCACCG TERM 196 163048 - 163033 - g 74 -7.6 -4.18018 | CCGTCCGAGCGAAAA GGAAAC CCTG GTTTCC CGCCTGATCGACCGC pnpA 162773 - 164917 + | polyribonucleotide nucleotidyltransferase TERM 197 164960 - 164939 - f 80 -11.5 -3.41602 | opp_overlap 164939 TTGATCCTATGACAA GGCGCGGGA GATT TTCCGCGCC TTTTTTTATCCGGGA TERM 198 164939 - 164960 + F 100 -13.7 -5.60993 | opp_overlap 164939 TTGATCCTATGACAA GGCGCGGGA GATT TTCCGCGCC TTTTTTTATCCGGGA TERM 199 165071 - 165033 - f 90 -7.5 -4.88288 | opp_overlap 165037, overlap 165039 GAAAACAAGAGAAAA TAGAGACTGTCTGTTTC GCCAT GAAACCGACAGAGTCTA ATCACGAGATTGCCG rsmC 165091 - 166107 + | ribosomal RNA small subunit methyltransferase TERM 200 166127 - 166150 + T 100 -16 -5.4833 | opp_overlap 166127 AACGATTACAAAAAA GGCGCCGGGA GAGA TCCTGGCGCC TTTTTTGTTCAATAG TERM 201 166150 - 166127 - T 100 -13.8 -5.33785 | opp_overlap 166127 AACGATTACAAAAAA GGCGCCGGGA GAGA TCCTGGCGCC TTTTTTGTTCAATAG fabI 166970 - 166176 - | enoyl-(acyl-carrier-protein) reductase TERM 202 166823 - 166807 - G 70 -2.1 -4.78237 | overlap 166808 166809 CACGGCAGAACAAAA TCCGAGC CGA GCTGGGC GGCTAGCGGCTTGAC TERM 203 166996 - 167021 + r 72 -9.7 -3.33696 | ATCGCTGTCATCCGT TATGACGCTGG AACA CCAGCGTCGCA TTCGTTCCACCAAAA fabB 168211 - 166988 - | 3-oxoacyl-(acyl-carrier-protein) synthase I TERM 204 167265 - 167283 + g 71 -8 -3.98282 | opp_overlap 167264 167266, overlap 167266 ATTTTGTCGCCAAAT ACGGTGCG GAT CGCGCCGA TTTCCTTGCTGTCGC TERM 205 167821 - 167838 + g 93 -8.4 -4.77165 | TCGGCACGGCGAACG GCCCGA TGCGCT TCGGGC TTTTGTTCTGGCGAG fabA 168761 - 168246 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA TERM 206 169134 - 169105 - g 72 -5.5 -4.41494 | opp_overlap 169118 169133, overlap 169107 GACGTGGAAGCAAAA CTGCGTCGGTCGG GCCT CAGGCCGACACGG CAGAGGGTTGCCTTG irr 169069 - 169485 + | transcriptional regulator Fur family Avi_0184 170185 - 169550 - | hypothetical protein TERM 207 169637 - 169614 - G 80 -9.6 -4.18762 | overlap 169618 AATGTCCAGCCAAAA TACAGTGCGC CGCC GCGCACCATA AATGCTGCCAGGACG Avi_0189 170989 - 170468 - | hypothetical protein TERM 208 170885 - 170862 - G 75 -8.8 -4.07568 | TTTTCGTGCTGAAAA TGCCGCCGCA TTTC TGCGACCGCA CCGATGGTCCGCAAT Avi_0190 172417 - 171038 - | ABC transporter membrane spanning protein (sugar) TERM 209 171092 - 171102 + g 83 -8.2 -4.63486 | CTCGTCCTTGGTGAT CGGC TTT GCCG TTTTGTTGCCCAGCT TERM 210 172314 - 172286 - G 83 -4.5 -5.14477 | TACAGATGGAAAAAA CAGCTGAGGAA AAACCAG TGCCGCAGCTG TGGCGTAAATGAAGA TERM 211 173072 - 173036 - R 100 -16.6 -5.1925 | opp_overlap 173032 TGACAAGCCAAAAAA TGCGCCCCCGGATGTT TTTTT ATCATCCGGGCGCGCA GAGCTGTTGAATCAG Avi_0191 173470 - 173084 - | hypothetical protein TERM 212 174027 - 174064 + G 71 -6.9 -4.18018 | gap 1 AAATCGCCGTCATGC CCG-CGGTGCGTCGCG CTCTGGT CGAGGCGCAGCGACGG TTTTCGCTGAAAGCC cmk 173741 - 174394 + | cytidylate kinase rpsA 174545 - 176266 + | 30S ribosomal protein S1 TERM 213 176317 - 176292 - f 100 -16.1 -4.90906 | opp_overlap 176292 TTAGAAGATTAAAAA CCCGCCGGGCA GCGA TGTCCGGCGGG TTTTTCTTTGGCTTG TERM 214 176292 - 176317 + F 100 -18.3 -5.33026 | opp_overlap 176292 TTAGAAGATTAAAAA CCCGCCGGGCA GCGA TGTCCGGCGGG TTTTTCTTTGGCTTG TERM 215 176373 - 176362 - f 70 -7.2 -4.10161 | opp_overlap 176354 GATGATTGCTGAAAA CGGC TCTT GCCG CCCATCGAGCAATGC Avi_0196 176428 - 177411 + | hypothetical protein TERM 216 177454 - 177428 - T 100 -10.9 -4.74132 | gap 1, opp_overlap 177428 ATAGTCCATGAAAAA GGCCTGGA-GCG TTTC CACATCCAGGCC TTTTGCCGATTGTCT TERM 217 177428 - 177454 + T 78 -8.7 -4.16251 | gap 1, opp_overlap 177428 ATAGTCCATGAAAAA GGCCTGGA-GCG TTTC CACATCCAGGCC TTTTGCCGATTGTCT Avi_0197 177991 - 177476 - | hypothetical protein Avi_0199 179074 - 178265 - | hypothetical protein infC 179359 - 179814 + | translation initiation factor IF-3 TERM 218 179860 - 179889 + F 100 -10.7 -5.09225 | opp_overlap 179860 ATCTGCCAGTTTAAA GCGACATGCGTTT TATC GAGCGCAGGTCGC TTTTTTACGTAAAGT TERM 219 180085 - 180121 + F 93 -13 -3.63073 | opp_overlap 180089 180106 GCTCTTAGCCTATTG GAAACTCCGCCGTCTC TAAAT GGAACGGCGGAGTTCC TTATTCGGGAGTGTG TERM 220 180117 - 180089 - f 88 -12.4 -3.60627 | opp_overlap 180085, overlap 180106 TTAGCCTATTGGAAA CTCCGCCGTCTC TAAAT GGAACGGCGGAG TTCCTTATTCGGGAG TERM 221 180134 - 180149 + F 70 -4.7 -4.53163 | TCCTTATTCGGGAGT GTGCA GATTTA TGCAC TTTTGTGGTCTATCC TERM 222 180221 - 180232 + F 82 -3 -5.2696 | opp_overlap 180211 180221 AGAAGTAAAATATAA TTTC AGTT GAAA TTTTTTGAATTTTGC TERM 223 181017 - 181029 + F 74 -3.3 -4.90266 | TGGATTTACGCTATC TCTCC AAC GGTGA TTTTTACTTGCTGAC Avi_0202 181269 - 181937 + | two component response regulator TERM 224 182698 - 182685 - g 74 -8.1 -4.19817 | overlap 182688 CGCATGGATTGAAAA CACCG CTGA CGGTG TTGGCGCAAATGGTG TERM 225 182875 - 182855 - g 72 -9.7 -3.7108 | AGCCTGATAGGCAAA CTGGTCAAG GTT CTTGACCCG ATTGCCCGGGCGCGA Avi_0203 181931 - 183286 + | two component sensor kinase TERM 226 183422 - 183453 + F 100 -13.1 -4.05446 | gap 1, opp_overlap 183412 183413, overlap 183425 183436 TATAAGCGCCCGTCC GAACGGTC-CGGCA GGGCA TGCCGTGGCCGTTC TTTATGCTTGAAAAC TERM 227 183425 - 183450 + F 82 -9 -4.1523 | gap 1, opp_overlap 183412 183413, overlap 183422 183436 AAGCGCCCGTCCGAA CGGTC-CGGCA GGGCA TGCCGTGGCCG TTCTTTATGCTTGAA rpmI 183514 - 183717 + | 50S ribosomal protein L35 TERM 228 183702 - 183728 + F 70 -3.6 -4.72386 | overlap 183708 183709 CATCAAGAACTACCT GCCTAACGGTCT CTG AGACCCTTTCGC TTTTTGGATCATTTA TERM 229 183786 - 183772 - g 71 -7 -4.11394 | overlap 183773 ATGTCACGCGTAAAA CGCGGC GTT GCCGCT CATGCCAAGCACAAA rplT 183757 - 184161 + | 50S ribosomal protein L20 TERM 230 184177 - 184140 - f 71 -10.8 -2.96249 | gap 2, opp_overlap 184172, overlap 184137 TGGCACCAAGAACGA GTTTGAGAC-CGC-GGTT AAGT AACCAGCGCGTCCCAAAC TGAAATTTGGTTATT TERM 231 184199 - 184223 + F 100 -12.8 -5.243 | opp_overlap 184199 TTGGTTATTGGGAAA CCCGCGCTGG GCAAA CTGGCGCGGG TTTTTTCATGGTTTA TERM 232 184445 - 184429 - g 74 -7.9 -4.16842 | opp_overlap 184430, overlap 184430 GCCATGGGCAAGAAA GGCTCGG TTT CCGAGCT TTTGAAAACGCTGGG TERM 233 184430 - 184444 + G 85 -11.4 -4.08216 | opp_overlap 184430 184429 CCATGGGCAAGAAAG GCTCGG TTT CCGAGC TTTTGAAAACGCTGG pheS 184324 - 185409 + | phenylalanyl-tRNA synthetase alpha-subunit pheT 185825 - 188248 + | phenylalanyl-tRNA synthetase beta chain TERM 234 188269 - 188290 + T 83 -5.8 -4.94902 | overlap 188271 ATCGTCAGGATCAGG TGGCGGGA ACTTTG TCCCGCTG TTTTTATCGTGATTG TERM 235 188271 - 188288 + T 77 -8.4 -4.08644 | overlap 188269 CGTCAGGATCAGGTG GCGGGA ACTTTG TCCCGC TGTTTTTATCGTGAT TERM 236 188312 - 188332 + T 100 -15.5 -4.39571 | opp_overlap 188312 TCGTGATTGTAAAAA CCCCTCGAA TAT TTCGAGGGG TTTTGCGTTTCTCAG TERM 237 188332 - 188312 - T 100 -15.5 -4.62069 | opp_overlap 188312 TCGTGATTGTAAAAA CCCCTCGAA TAT TTCGAGGGG TTTTGCGTTTCTCAG TERM 238 188457 - 188415 - T 84 -7.4 -4.62069 | CCTCGACTTGAAAAA TTGAAAATATCTCAAA TGCGCCAGAGG CTTGAGATATTTTCAA ATGGAATACGAAGTG Avi_0210 188942 - 188499 - | hypothetical protein TERM 239 189402 - 189418 + r 78 -9.5 -3.91897 | opp_overlap 189394 GCACCAATTCCCAAG CCAAATC TTT GATTTGG TTTATGAATACAAAA TERM 240 189460 - 189427 - R 100 -16.9 -3.14344 | opp_overlap 189429 189436, overlap 189429 189436 GATTTGGTTTATGAA TACAAAAAAGCCCGG TTCG CCGGGCTTTTTTGTT TTTAAGCGTCTTTTC TERM 241 189458 - 189429 - R 100 -19.5 -3.13403 | opp_overlap 189429 189436, overlap 189427 189436 TTTGGTTTATGAATA CAAAAAAGCCCGG TTCG CCGGGCTTTTTTG TTTTTAAGCGTCTTT TERM 242 189429 - 189458 + r 100 -19.5 -4.62904 | opp_overlap 189429 189427 189436, overlap 189436 TTTGGTTTATGAATA CAAAAAAGCCCGG TTCG CCGGGCTTTTTTG TTTTTAAGCGTCTTT TERM 243 189451 - 189436 - R 100 -11.8 -5.49569 | opp_overlap 189429 189436, overlap 189429 189427 TATGAATACAAAAAA GCCCGG TTCG CCGGGC TTTTTTGTTTTTAAG TERM 244 189436 - 189451 + r 100 -11.8 -5.93252 | opp_overlap 189436 189429 189427, overlap 189429 TATGAATACAAAAAA GCCCGG TTCG CCGGGC TTTTTTGTTTTTAAG Avi_0211 189866 - 189489 - | hypothetical protein TERM 245 189642 - 189628 - G 84 -7 -4.73108 | opp_overlap 189632 189637, overlap 189629 CCGAGAAAATGAAAA TCGCGG GTG CCGCGC CCTTGCATCAGCACG TERM 246 190246 - 190190 - R 100 -18.9 -4.41548 | opp_overlap 190201, overlap 190193 190195 190196 190244 GTACATGCGACAAAA TAAGAGCTAAAGCGTGTCGCAGTGAAT CCT ATTCACTGCGACACGCTTTAGAACCGG TCCGAGACGCGAATA TERM 247 190243 - 190193 - R 100 -27.2 -4.32067 | opp_overlap 190201, overlap 190190 190195 190196 CATGCGACAAAATAA GAGCTAAAGCGTGTCGCAGTGAAT CCT ATTCACTGCGACACGCTTTAGAAC CGGTCCGAGACGCGA TERM 248 190241 - 190195 - R 100 -28.4 -3.75581 | opp_overlap 190201, overlap 190193 190190 190196 TGCGACAAAATAAGA GCTAAAGCGTGTCGCAGTGAAT CCT ATTCACTGCGACACGCTTTAGA ACCGGTCCGAGACGC TERM 249 190240 - 190196 - R 100 -31.9 -2.84625 | opp_overlap 190201, overlap 190195 190193 190190 GCGACAAAATAAGAG CTAAAGCGTGTCGCAGTGAAT CCT ATTCACTGCGACACGCTTTAG AACCGGTCCGAGACG TERM 250 190201 - 190235 + r 100 -26 -3.53811 | opp_overlap 190196 190195 190193 190190 AAAATAAGAGCTAAA GCGTGTCGCAGTGAAT CCT ATTCACTGCGACACGC TTTAGAACCGGTCCG ctpI 191217 - 190237 - | component of type IV pilus TERM 251 191168 - 191148 - G 79 -7.5 -4.58685 | overlap 191137 AAAGGGTGGCAAAAA CCGCAATGG CCA CCAATACGG CGATCAGCAGGGTCG ctpH 192232 - 191228 - | component of type IV pilus TERM 252 191906 - 191882 - G 78 -3.6 -4.89852 | gap 1, overlap 191884 GCACAGGCAGAAAAA CACCAG-ACCA AGGG TGGTGCTGGCA ATGCTGAACTGGATG TERM 253 191939 - 191976 + g 81 -3.3 -5.18715 | gap 1, opp_overlap 191935, overlap 191940 191941 GCTGACATCAAGGCC GGTCTGGCCGAGCCGCTG TTT CAGCGACT-GGCTGGAGA TTTTCTTGTTTTTCT ctpG 193714 - 192236 - | component of type IV pilus ctpF 195050 - 193764 - | component of type IV pilus TERM 254 194000 - 193990 - G 71 -6.8 -4.15222 | opp_overlap 193989 193958 193995 AGCGGTTCGAAGAAA TCGC TGG GCGA AATTTCCGGCCGTTT ctpE 195667 - 195077 - | component of type IV pilus ctpD 197358 - 195781 - | component of type IV pilus TERM 255 196069 - 196038 - G 71 -10.1 -3.55444 | opp_overlap 196038, overlap 196023 196040 196041 TCGGGATTTTCGAAA TACCCGGCAGGCC GGACAT GGCCTGGCGGACA TTGTCCTGGACCAGA ctpC 198164 - 197355 - | component of type IV pilus ctpB 198793 - 198275 - | component of type IV pilus prepilin peptidase protein TERM 256 198965 - 198947 - R 100 -9.5 -5.32396 | opp_overlap 198945 198947 ACAGCAAAAAGAAAA GCCGCCC TTGCG AGGCGGC TCTTGTAGCCTTGAG ctpA 199182 - 198997 - | component of type 4 pilus pilin subunit protein ctpA 199555 - 199370 - | component of type 4 pilus pilin subunit protein pilQ 199899 - 200378 + | pilus subunit transmembrane protein Avi_0226 200605 - 201228 + | hypothetical protein TERM 257 201639 - 201659 + G 87 -7.6 -4.7497 | gap 1 GTGACGCTTCCGTCC GGCA-TGGC CGCC GCCAATGCC TTTTTCGTCCATGCG Avi_0228 201225 - 201809 + | hypothetical protein TERM 258 202657 - 202678 + G 70 -12.3 -2.8552 | overlap 202656 AATCGGAGGGATTAT TCGGTTCCG CCGC CGGAGCCGA CTTTGCTCGATCGGC deoB 201958 - 203178 + | phosphopentomutase add 203175 - 204173 + | adenosine deaminase upp 204258 - 204887 + | uracil phosphoribosyltransferase TERM 259 204940 - 204910 - f 75 -6.7 -4.35042 | opp_overlap 204911 204915, overlap 204907 204911 204915 TTCAGCATAAAAGAA TCGAACCCCGGTG CCTGT CGCCGGGGTTTGT TATTGAGGGGTGCTG TERM 260 204939 - 204911 - f 70 -10.2 -3.20302 | opp_overlap 204911 204915, overlap 204910 204907 204915 TCAGCATAAAAGAAT CGAACCCCGGTG CCTGT CGCCGGGGTTTG TTATTGAGGGGTGCT TERM 261 204911 - 204939 + F 100 -14.6 -3.62775 | opp_overlap 204911 204910 204907 204915, overlap 204915 TCAGCATAAAAGAAT CGAACCCCGGTG CCTGT CGCCGGGGTTTG TTATTGAGGGGTGCT TERM 262 204915 - 204935 + F 100 -11.8 -4.44667 | opp_overlap 204911 204910 204907 204915, overlap 204911 CATAAAAGAATCGAA CCCCGGTG CCTGT CGCCGGGG TTTGTTATTGAGGGG Avi_0232 204983 - 205504 + | hypothetical protein TERM 263 205541 - 205562 + F 77 -3 -5.1523 | opp_overlap 205538 TGCCGTATTGAAGGG CAAAGCCT GCCCTG AGCCTTTG TTTTTGTGTTGTGCA rhtB 205644 - 206273 + | RhtB family transporter TERM 264 206283 - 206316 + T 91 -11 -4.21275 | overlap 206284 ATCTGATTTTCTGCA ATGTGCCGCCCATG CAATTC CATGAGCGGCACAA TTTTAAATCGCTTAG TERM 265 206284 - 206315 + T 93 -14.5 -3.12283 | overlap 206283 TCTGATTTTCTGCAA TGTGCCGCCCATG CAATTC CATGAGCGGCACA ATTTTAAATCGCTTA TERM 266 206437 - 206386 - T 70 -5.2 -4.40882 | gap 1, opp_overlap 206392 206397, overlap 206391 206392 GACAAACGAAAACAA GAGAATCTAGAGTATGTCTGGTTCA ATC TGAACCTGACAAACTCTAG-TGAGC GCCGGACATGTCGCC TERM 267 206433 - 206391 - T 100 -15 -3.97437 | opp_overlap 206392 206397, overlap 206386 206392 ACGAAAACAAGAGAA TCTAGAGTATGTCTGGTTCA ATC TGAACCTGACAAACTCTAGT GAGCGCCGGACATGT TERM 268 206432 - 206392 - T 100 -18.5 -2.96836 | opp_overlap 206392 206397, overlap 206391 206386 CGAAAACAAGAGAAT CTAGAGTATGTCTGGTTCA ATC TGAACCTGACAAACTCTAG TGAGCGCCGGACATG TERM 269 206397 - 206427 + T 70 -11.2 -2.78384 | opp_overlap 206392 206391 206386, overlap 206392 ACAAGAGAATCTAGA GTATGTCTGGTTCA ATC TGAACCTGACAAAC TCTAGTGAGCGCCGG Avi_0235 207064 - 206429 - | Phosphoglycerate mutase 1 protein dapB 207912 - 207100 - | dihydrodipicolinate reductase Avi_0238 209788 - 207998 - | ABC transporter nucleotide binding/ATPase protein TERM 270 209836 - 209863 + r 70 -6.9 -4.11216 | overlap 209837 209839 ACCATCATGGCCGCG CCAGCCGGTCT ATAGCC AGTCCGGCTGC TTTTGACCATAGAGC glk 210915 - 209893 - | glucokinase TERM 271 210050 - 210065 + g 71 -11.8 -3.01712 | opp_overlap 210048 210047 TTGTCCTCGAAAGCG GCCCGG AAGA CCGGGC TCTTCAGCAAGGGGA TERM 272 210264 - 210286 + g 75 -12 -3.31144 | opp_overlap 210257 TCCATACAGGCTCAA TGCCATCGGC AGC GCAGATGGCA TTGTAGAGATGCAGG mgsA 211343 - 210963 - | methylglyoxal synthase TERM 273 211152 - 211168 + g 83 -9.3 -4.30576 | GCCGATTTGCTGGTC GCCGCCC AGA GGGCCGC TTTTCATCCTGAGAA mepA 212439 - 211429 - | penicillin-insensitive murein endopeptidase TERM 274 212112 - 212165 + g 70 -4.3 -4.58395 | gap 1 CATGGCCATTGGCCA TCGGCCCGCCGCG-CGGCTGGGCG ATATCGC CGACCAGCAGGCCCGGCCAACCGA TTTTTGGCGCATCGC TERM 275 214223 - 214201 - g 80 -4.9 -4.88388 | gap 1 ATAATCTGAGAAAAA TCGG-CATCG AGGT CAATGTCCGA AGCGTCGATTCCTCC Avi_0244 212727 - 214622 + | ABC transporter substrate binding protein (peptide) TERM 276 214673 - 214659 - f 73 -11.4 -2.80443 | opp_overlap 214656 214655 GCATAGGCGATCACA GCCTGC TTT GCAGGC CGCATTTCAGCCGCT Avi_0245 214795 - 215886 + | ABC transporter membrane spanning protein (peptide) Avi_0246 215886 - 217022 + | ABC transporter membrane spanning protein (peptide) TERM 277 218020 - 218047 + G 72 -8.4 -3.85817 | gap 1, overlap 218011 218005 TCTGGCGCTGGCGCG GCTGATCTCGTCC CGG GGCCG-GATCGGC TTTCTCGGCAAGAAT Avi_0247 217019 - 218647 + | ABC transporter nucleotide binding/ATPase protein (peptide) Avi_0248 218676 - 219638 + | 2-hydroxyacid dehydrogenase Avi_0249 219721 - 220002 + | hypothetical protein TERM 278 220069 - 220085 + F 77 -3 -5.09225 | gap 1, overlap 220061 TGAAGTTCCCAGCCA CTG-GAC TTTG GTCACAG TTTTTTCGATAAGGT TERM 279 220136 - 220113 - f 100 -15.4 -4.07568 | overlap 220098 220120 GGTTGGCCCTGAAAA GACCATAGCC ATCC GGCTATGGTC GTAATGGCGCGGCCA TERM 280 220359 - 220341 - g 73 -11.7 -3.15544 | overlap 220353 GTTTACGCTGATTAA CCGCACG ACAAG CGTGCGG ATTGCCGACGAGATC TERM 281 220770 - 220803 + G 71 -11.7 -2.87344 | TTCCGATTTCGGCAC CCGTCGTCGCCACAG TTTT CTGTGGCAAAGATGG TGTGTGGAAGCCCTG TERM 282 221052 - 221090 + G 74 -7.2 -4.32034 | CGGCACCTCGGCTTT CCTGCGCGATGCGCCGCC CTG GGTGGCGGATTGGACTGG TTTTCGTCCTGATAG pncB 220183 - 221487 + | nicotinate phosphoribosyltransferase Avi_0252 221995 - 221504 - | hypothetical protein Avi_0253 222659 - 222979 + | hypothetical protein TERM 283 222988 - 223039 + F 100 -30.8 -3.66803 | opp_overlap 223000 AGCCTGATATTCCCA TCTACTGCATAATTCCTTAAATCG GAAT CGATTTAAGGAATTATGCAGTAGA TTTAAAGTGTTACAG TERM 284 223027 - 223000 - f 100 -14.4 -3.33492 | opp_overlap 222988 CCATCTACTGCATAA TTCCTTAAATCG GAAT CGATTTAAGGAA TTATGCAGTAGATTT TERM 285 223334 - 223353 + F 100 -10 -4.93696 | opp_overlap 223334 223337 TAAAAATAGAGCAAA CAAGCCGT TGAT GCGGCTTG TTTTTCGTCTTTCAG TERM 286 223353 - 223334 - f 81 -9.3 -4.02999 | opp_overlap 223334, overlap 223337 TAAAAATAGAGCAAA CAAGCCG TTGATG CGGCTTG TTTTTCGTCTTTCAG TERM 287 224003 - 223982 - g 75 -8.7 -4.08216 | GTATGGCCTCCAAAA CCGGCAAAG TCAG CTTTGTCGG CGGCATGGACATTCC Avi_0256 223555 - 224547 + | membrane lipoprotein TERM 288 224589 - 224555 - f 88 -12.1 -3.6215 | gap 1, opp_overlap 224558, overlap 224558 CGAAGTGATCTGAAA CGAGGGCGCGA-GCGG CATT CCGCCTCGCGCCCTTT TCATGTCCGTTAGAG TERM 289 224558 - 224586 + F 100 -18.2 -4.36931 | gap 1, opp_overlap 224558 224555 AGTGATCTGAAACGA GGGCGCGA-GCGG CATT CCGCCTCGCGCCC TTTTCATGTCCGTTA TERM 290 224586 - 224558 - f 100 -18.2 -2.92792 | gap 1, opp_overlap 224558, overlap 224555 AGTGATCTGAAACGA GGGCGCGA-GCGG CATT CCGCCTCGCGCCC TTTTCATGTCCGTTA TERM 291 224607 - 224633 + F 100 -11 -4.82548 | ATGTCCGTTAGAGCG TTTTCGCTTTTC GCC GAACAGCGAAAA TTTTCTCTCTTTTTG Avi_0258 224789 - 226222 + | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) Avi_0259 226230 - 227360 + | ABC transporter membrane spanning protein (sugar/ribonucleotide) TERM 292 227508 - 227533 + G 73 -11.7 -3.14125 | opp_overlap 227506 227504, overlap 227506 227510 TTGGAAGGCAAGATG CTGGCCGGCGC TTTC GCGGCGGCCTG TGTTGCCTATCTCAC TERM 293 227510 - 227531 + G 76 -12.9 -3.12856 | opp_overlap 227506 227504, overlap 227508 227506 GGAAGGCAAGATGCT GGCCGGCGC TTTC GCGGCGGCC TGTGTTGCCTATCTC TERM 294 227778 - 227803 + G 70 -4.7 -4.44245 | gap 1 CCGATTGTGCTTCCA GGCAC-TGATGC CCT GCGTGACGTGCC TTTTCTCGGTCCTCT TERM 295 228078 - 228114 + G 73 -10.9 -3.35597 | gap 1, overlap 228060 228077 TTCATCCGCGATATG TCGGCG-GGCAAGGGC TATATC GCGCTTGCCGCGCTGA TCTTTGCCAAGTGGA Avi_0260 227373 - 228344 + | ABC transporter membrane spanning protein (sugar/ribonucleotide) cdd 228346 - 228738 + | cytidine deaminase TERM 296 229348 - 229373 + G 100 -15.5 -5.0538 | overlap 229333 CGGTCGGCATGTCCA CCGTGCCGGAA GTCA TTCTGGCACGG TTTTTTGGCCTGAAG Avi_0263 228735 - 229544 + | purine nucleotide phosphorylase deoC 229522 - 230310 + | deoxyribose-phosphate aldolase TERM 297 230896 - 230875 - g 75 -5.8 -4.57073 | CATTCTGTCCAAAAA GCTCGCCA GCGGAT TGGAGAGC CTGGTGATGGATGTG deoA 230312 - 231631 + | thymidine phosphorylase phnF 232352 - 231615 - | phosphonates metabolism transcriptional regulator PhnF TERM 298 232294 - 232337 + g 76 -4.5 -4.82901 | ACCCGGATTCGATCG GCAATCTGACGCCAGAGCG CCACGC CGGTCTGTCTTTCGATTGC TTTTTGTCCCGCCAC phnG 232452 - 232919 + | hypothetical protein TERM 299 233119 - 233164 + G 81 -12.6 -3.53091 | gap 2, opp_overlap 233142 CGATACCCGCGTCTG GCTGAG-C-GGCGGGCTTGGCA AAAG TGCCGTGCCCGCCTGGCTGAGC TTTCACACCGGCGCT TERM 300 233205 - 233215 + G 79 -6.8 -4.56597 | opp_overlap 233204 CCGACAAGACCGAAG CGCA GTT TGCG TTTTTCGAAGCAGGC phnH 232979 - 233524 + | hypothetical protein phnI 233525 - 234631 + | hypothetical protein TERM 301 234947 - 234920 - g 70 -12 -2.71712 | overlap 234919 TGCCTCGCGTGAAAT GCCAATGCCCTA TGGC TGGGGCACTGGC GGCGTACAGGTGACG phnJ 234774 - 235682 + | hypothetical protein phnK 235679 - 236455 + | phosphonate C-P lyase system protein PhnK TERM 302 237155 - 237197 + G 83 -7.6 -4.71463 | overlap 237156 GTCTCGCAATTCTCA CCTAGAGGCCGTCAGGTTCA GAT TGAACCAGCCATCCTCTAGC TTTCTTGTTTTCGTT TERM 303 237156 - 237196 + G 73 -11.1 -3.40437 | overlap 237155 TCTCGCAATTCTCAC CTAGAGGCCGTCAGGTTCA GAT TGAACCAGCCATCCTCTAG CTTTCTTGTTTTCGT phnL 236468 - 237196 + | phosphonate C-P lyase system protein PhnL Avi_0277 237272 - 237895 + | acetyltransferase phnC 238012 - 238851 + | phosphonate ABC transporter ATP-binding protein phnD 239008 - 239916 + | ABC transporter substrate binding protein (phosphonate) TERM 304 239961 - 239937 - f 75 -11.4 -2.97021 | opp_overlap 239932 239924, overlap 239932 239930 GCTGGAAACATGAGA GCCGCCGG GATAAACGA CCGGCGGC TTCCCCATTTGTCCA phnE 239993 - 240955 + | ABC transporter membrane spanning protein (phosphonate) phnE 240965 - 242464 + | ABC transporter membrane spanning protein (phosphonate) TERM 305 242577 - 242589 + G 72 -4.7 -4.64861 | CGCGATAGGATTGCT GTGCG TTA CGCCC TTTATTTTACACCGC Avi_0286 242577 - 243278 + | hypothetical protein TERM 306 243849 - 243870 + G 72 -8.7 -3.90112 | opp_overlap 243838 243837 243845, overlap 243845 243850 AGACCAAGAAGGGCT TGAGCGAGG AAGC CTTCGCTCG TTTCGTTGAAAAGCG phnM 243278 - 244429 + | phosphonate metabolism protein PhnM gmk 244489 - 245040 + | guanylate kinase TERM 307 245760 - 245779 + G 73 -12.1 -3.05022 | GGCGCTGGTCTTTTC CGCGCCG ATACCC CGGCGCG TCTATCTCTCAGCCA rhtB 245245 - 245874 + | RhtB family transporter Avi_0290 246668 - 245880 - | hypothetical protein TERM 308 246511 - 246496 - G 71 -6.8 -4.1523 | gap 1 TGCATGACAGACAAA GCCTGCG GCG CGC-GGC CGCCCATCTGCAACA TERM 309 246988 - 246977 - H 75 -4.4 -4.78848 | TCTTGAAAGATAAAA CCTT CACG AAGG AACCGATTCTAAGGA TERM 310 247731 - 247750 + G 73 -3.4 -4.72007 | opp_overlap 247733, overlap 247733 GGGCCACAAGAAGAT CACCCTGG TCGG CAAGGGAG TTTGTTTTGATACCG TERM 311 247837 - 247812 - g 73 -3.2 -4.72272 | overlap 247815 GTTGCTGATGAAAAA GGACATGGGC GGGGCT GCCAATGTGC TGGGCCTTGCCCTGA Avi_0292 247054 - 248442 + | leucine aminopeptidase Avi_0293 249043 - 249738 + | hypothetical protein Avi_0295 250049 - 251299 + | cytochrome b561 TERM 312 251319 - 251342 + F 70 -6.7 -4.0348 | gap 1 ATCCATCCATCACAG GTCCGGC-CT CTTGC AGTGCCGGGC TTTGTCATGTGATAT Avi_0296 251390 - 251740 + | hypothetical protein Avi_0297 251743 - 252603 + | hypothetical protein TERM 313 252707 - 252660 - T 77 -6.4 -4.65263 | gap 1, opp_overlap 252671, overlap 252662 ATGCGTTAAAACAAA GAGTTAGAGTATTTATGCGTTTC TAT GAAACGCGGAAATGCTCTAGC-C AATCCAATCAGGAGA TERM 314 252706 - 252662 - T 81 -10.1 -3.93868 | opp_overlap 252671, overlap 252660 GCGTTAAAACAAAGA GTTAGAGTATTTATGCGTTTC TAT GAAACGCGGAAATGCTCTAGC CAATCCAATCAGGAG polA 255707 - 252729 - | DNA polymerase I TERM 315 254565 - 254539 - G 74 -6.4 -4.42788 | TCGAAGGCGACAAAA CCGGCCTCCCGC GCC GCGGCAATCCAG CCTTCCAGGGTGGGA TERM 316 255476 - 255487 + g 72 -4.4 -4.58663 | ATTCGGGATAGAGAT CCTT GCGG AAGG TTTTTGACGAATAGT TERM 317 256014 - 255983 - H 100 -13.1 -4.25104 | opp_overlap 255983 CCCCTGTTACGAAAA GTCGTCACGGC GCCGCCTCCA GCCGTGACGAC TTTTTTGTTTGTGCC TERM 318 255983 - 256014 + H 100 -13.1 -5.72622 | opp_overlap 255983 CCCCTGTTACGAAAA GTCGTCACGGC GCCGCCTCCA GCCGTGACGAC TTTTTTGTTTGTGCC Avi_0300 256094 - 256543 + | transcriptional regulator MarR family TERM 319 256646 - 256679 + G 82 -10.3 -4.1585 | gap 1, opp_overlap 256654 CCCATTCTCGCCGAG GCCGA-CAAGGCGCTG CCA CAAAGCCTTGATCGGC TTTTCGACCTTGTGC dapE 256616 - 258004 + | succinyl-diaminopimelate desuccinylase TERM 320 258028 - 258048 + F 100 -14 -4.56914 | ACGCGATTGCGACGA CGCCCGGA CGAAC TCCGGGCG TTTTCATTTGGATCG TERM 321 258129 - 258109 - f 91 -7.5 -5.1417 | opp_overlap 258109 CCAGAAAAGCAAAAA GGCCGGG GAGTAAA CCCGACC TTTCCAAAACTCGCT TERM 322 258543 - 258529 - g 78 -11.4 -3.65351 | opp_overlap 258537 258538, overlap 258538 TCACCGTGATTGAAA CCGAGC AAA GCTCGG CCACCGTGCCTTTGG Avi_0303 258465 - 258923 + | hypothetical protein TERM 323 258983 - 258963 - T 100 -18.3 -5.48063 | opp_overlap 258963 ATCGAATACAAAAAA GGCGGCGCA GGA TGCGCCGCC TTTCCTCCTCGCCAT TERM 324 258963 - 258983 + T 100 -18.3 -3.78953 | opp_overlap 258963 ATCGAATACAAAAAA GGCGGCGCA GGA TGCGCCGCC TTTCCTCCTCGCCAT Avi_0304 259375 - 259052 - | hypothetical protein TERM 325 261416 - 261394 - g 73 -12 -3.03619 | opp_overlap 261388 261386, overlap 261407 AAGCAGCTGGCAAGA CCGGAACGAC ACA GTCGTTCCGC GACGCGCTGTTTGTC pbpC 259590 - 262091 + | penicillin-binding protein TERM 326 262520 - 262534 + G 75 -5.6 -4.57569 | opp_overlap 262503, overlap 262501 262519 GGGCGCGCGTACCAC GCCGTC CAT GGTGGC TTTTTCGGACGATGG dnaK 262413 - 264329 + | DNAK Protein Avi_0307 264329 - 264790 + | hypothetical protein TERM 327 264865 - 264852 - g 70 -2.3 -4.80882 | overlap 264863 ACCGCAGATGAAAAA GAGCT GAAA AGCGC CTTCCGCAAGCTGGC TERM 328 265886 - 265901 + G 72 -4.7 -4.57073 | opp_overlap 265880 265867 265886 GTCCAAGGAGAACAA TCCAG AATCGA CTGGA TTTTTCGCCCGGATG dnaJ 264795 - 265937 + | molecular chaperone DnaJ family TERM 329 265946 - 265968 + T 100 -17 -4.09864 | opp_overlap 265946 GGGTTGATGAAAAAA GGCCGGTGCG CTT CGCATCGGCC TTTTCCACGGTCAAT TERM 330 265968 - 265946 - T 100 -14.8 -5.14563 | opp_overlap 265946 GGGTTGATGAAAAAA GGCCGGTGCG CTT CGCATCGGCC TTTTCCACGGTCAAT Avi_0309 266203 - 265979 - | hypothetical protein TERM 331 266766 - 266791 + G 77 -10.3 -3.92373 | overlap 266753 TGGACGGTCTCTTCA CCGGCTCCTCT TCCG AGCGGCGCCGG TTTCTGGATCGGCTG recF 266366 - 267490 + | DNA replication and repair protein moeB 267526 - 268296 + | molybdopterin biosynthesis protein TERM 332 268784 - 268760 - g 76 -2.8 -5.00616 | gap 1, overlap 268764 TTGTCGGGGAAAAAA GCCATCCCGGT TATG ACCGGG-CAAC GTTCGTGCTGATGGA Avi_0313 268339 - 268815 + | hypothetical protein TERM 333 268812 - 268855 + T 100 -18.6 -3.56643 | gap 1, opp_overlap 268822 268825, overlap 268819 268822 268825 GGAAAAGCCACTCCT CTGATGATAAGAACAGCCATT GAA AATGGCTGTTCTTATT-TCAG TTTCGAACATCTCAA TERM 334 268819 - 268849 + T 100 -18.6 -3.84451 | opp_overlap 268822 268825, overlap 268812 268822 268825 CCACTCCTCTGATGA TAAGAACAGCCATT GAA AATGGCTGTTCTTA TTTCAGTTTCGAACA TERM 335 268822 - 268846 + T 100 -15.9 -4.05026 | opp_overlap 268822 268825, overlap 268819 268812 268825 CTCCTCTGATGATAA GAACAGCCATT GAA AATGGCTGTTC TTATTTCAGTTTCGA TERM 336 268846 - 268822 - T 100 -15.9 -3.40403 | opp_overlap 268822 268819 268812 268825, overlap 268825 CTCCTCTGATGATAA GAACAGCCATT GAA AATGGCTGTTC TTATTTCAGTTTCGA TERM 337 268825 - 268843 + T 91 -11.8 -4.13254 | opp_overlap 268822 268825, overlap 268822 268819 268812 CTCTGATGATAAGAA CAGCCATT GAA AATGGCTG TTCTTATTTCAGTTT TERM 338 268843 - 268825 - T 88 -11.8 -3.84406 | opp_overlap 268825 268822 268819 268812, overlap 268822 CTCTGATGATAAGAA CAGCCATT GAA AATGGCTG TTCTTATTTCAGTTT TERM 339 268946 - 268914 - T 77 -8.3 -4.07568 | opp_overlap 268905 268909 CGCGCCCCGGCAAAA CCCGGTTCGGTGGCC TGT GGCCATCGAAATAGG TGCGGATATTGATGA Avi_0314 269898 - 268894 - | D-isomer specific 2-hydroxyacid dehydrogenases family protein TERM 340 269956 - 269988 + H 82 -11.9 -3.56594 | overlap 269959 GGCGATGATTCCGGC CAGTCGTCGCGCGTC GCT GGCGCGGGACGGATG TTTCAAGAGGTTTCG TERM 341 269959 - 269985 + H 76 -12.2 -2.60992 | overlap 269956 GATGATTCCGGCCAG TCGTCGCGCGTC GCT GGCGCGGGACGG ATGTTTCAAGAGGTT Avi_0315 270187 - 270726 + | hypothetical protein Avi_0316 271762 - 270770 - | pfkB family carbohydrate kinase TERM 342 270930 - 270963 + g 70 -11.7 -2.82623 | gap 1, opp_overlap 270917 270930, overlap 270927 CCGGAGGCGAACAGA TCGCCAGCACCGGTCG TGT CGACCAGTTC-GGCGA TGGTTGTGGCAGGCA TERM 343 270963 - 270930 - G 79 -13.9 -3.08813 | gap 1, opp_overlap 270930 270927, overlap 270917 CCGGAGGCGAACAGA TCGCCAGCACCGGTCG TGT CGACCAGTTC-GGCGA TGGTTGTGGCAGGCA Avi_0317 273319 - 271874 - | GGDEF family protein TERM 344 273741 - 273693 - R 100 -18.3 -5.22258 | opp_overlap 273697, overlap 273696 273697 CAAACGAAAACAAAA GAATCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAGCCGC CAGTCCCGATTACAC TERM 345 273738 - 273696 - R 100 -20.8 -4.64486 | opp_overlap 273697, overlap 273693 273697 ACGAAAACAAAAGAA TCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAGC CGCCAGTCCCGATTA TERM 346 273737 - 273697 - R 100 -24.3 -3.36251 | opp_overlap 273697, overlap 273696 273693 CGAAAACAAAAGAAT CTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAG CCGCCAGTCCCGATT Avi_0319 276177 - 273751 - | hypothetical protein Avi_0320 277768 - 276197 - | NADH Dehydrogenase Protein TERM 347 277664 - 277693 + g 72 -4.9 -4.56775 | opp_overlap 277618 CGCTGCGGCCTGCGC CAGCCGAGGACTA TATC TGGGCCTTTGCTG TTTTTGAGCAAAGCT oxyR 277878 - 278762 + | transcriptional regulator LysR family Avi_0323 279959 - 278802 - | hypothetical protein Avi_0326 280369 - 281022 + | Transcriptional regulator protein TERM 348 281050 - 281077 + T 77 -11.3 -3.19026 | opp_overlap 281040 ACGAAGGCCGGTCTG CCAGCCGTACA TCCTTT TGCACGGCTGG TTCCGTCTTCGCCTG guaA 282742 - 281180 - | GMP synthase pfs 283465 - 282827 - | 5prime-methylthioadenosine/S-adenosylhomocysteine nucleosidase Avi_0329 283899 - 283462 - | hypothetical protein TERM 349 283630 - 283616 - G 84 -7 -4.78848 | opp_overlap 283617, overlap 283618 CCGCGAAACAGAAAA CGGTCG CCG CGCCCG GGCGACATCATGTTG tspO 284487 - 284023 - | tryptophan-rich sensory protein TERM 350 284557 - 284532 - R 86 -12.7 -3.52787 | gap 1, opp_overlap 284523 284536 GATGGAAGAGGATAA GC-CATCATCCG ATG CGGATGATGTGC TGGTCCCAGTTTACA TERM 351 284536 - 284552 + r 70 -10.9 -2.82635 | opp_overlap 284532, overlap 284523 GAAGAGGATAAGCCA TCATCCG ATG CGGATGA TGTGCTGGTCCCAGT Avi_0332 285609 - 284536 - | hypothetical protein TERM 352 285164 - 285148 - G 86 -12.3 -4.08767 | opp_overlap 285147 285145 GCCATGGGCTGAAAA TTCGCCG ATC CGGCGAA ATCTGTCTGTTGCAT TERM 353 285668 - 285640 - R 75 -4.4 -4.8622 | gap 1, overlap 285641 TCCGCGAAGGAAAAA CCGGCGCTGAGGC CGAC GCCGCCGC-CCAG CCCATCGCTGAGATC Avi_0333 286739 - 285615 - | hypothetical protein TERM 354 286256 - 286282 + g 74 -6.4 -4.46212 | AGAGCACATATTCCA GCGCGCCAAGCC CCT GGATTGCCACGC TTTTCTCATGCAGGG Avi_0334 288325 - 286739 - | hypothetical protein TERM 355 287765 - 287780 + g 74 -6 -4.50058 | opp_overlap 287755 287752 ATTCAGCGCCTTCAA GGCGGC AATC GCGGCC TTTTCCTTGTCGGTA TERM 356 288324 - 288295 - G 100 -18.6 -3.29144 | opp_overlap 288295 GCATCCCCGTGATAA TGGCCGCCGCCC GTTTGT GGGCAGCGGCCA TTTGTTTTCAATCCG TERM 357 288295 - 288324 + g 100 -17.1 -4.68908 | opp_overlap 288295 GCATCCCCGTGATAA TGGCCGCCGCCCG TTTG TGGGCAGCGGCCA TTTGTTTTCAATCCG Avi_0335 289620 - 288343 - | hypothetical protein TERM 358 289598 - 289584 - G 83 -9.2 -4.30978 | TGGAAGCGATGAAAA GCGCCA GAC CGGCGC CGATCATGAGTGATC sun 291024 - 289738 - | Sun protein Avi_0337 291768 - 291334 - | rare lipoprotein A TERM 359 291872 - 291859 - R 80 -5.3 -4.92314 | AGGAATTTAGAAAAA CTGTT TAAA AACAG CCTAAAAACGCAATA TERM 360 291895 - 291881 - R 88 -8.6 -4.69464 | AAAACAGCCTAAAAA CGCAAT AAT ATTGCG AGCTATGTGATTTTG Avi_0339 292939 - 292043 - | hypothetical protein TERM 361 292211 - 292166 - GR 70 -6.7 -4.13945 | gap 1, opp_overlap 292172, overlap 292169 ATTCTCACCGTAAAA GGACCGCGCCATCGGCGACAGC TCG GCTGTCTC-GAAGGCCTGTTCC GGCGGCGGCTCGACC TERM 362 292354 - 292376 + gr 83 -7.7 -4.56597 | CAATATCTTCGACGC GGATCCGGT TGAAC ACCTGATCC TTTTTCACCAGACGC Avi_0340 294084 - 292912 - | iron-sulfur cluster binding protein TERM 363 293862 - 293876 + gr 72 -8.5 -3.76224 | GCACTTTCGGATCGC CGCGC CGCTC GCGCG TTTCCTCCATCCAGG Avi_0341 294788 - 294096 - | glutathione S-transferase TERM 364 295507 - 295519 + G 87 -7.7 -4.80167 | GGGCACAGATAAGCG TTCGG CCG CCGAA TTTTCGTTTTTCCTG bacA 294962 - 295768 + | undecaprenyl pyrophosphate phosphatase TERM 365 295898 - 295856 - T 76 -12.7 -2.5655 | opp_overlap 295857 295858, overlap 295855 GTGACGCACACGAAT TCCTACAGCGCCGCGTGTT TTATG AACGCACGGCGCTGTAGTG TTTTTCAGAGAAAAA TERM 366 295857 - 295898 + T 100 -16.7 -4.56597 | gap 1, opp_overlap 295856 295855, overlap 295858 TGACGCACACGAATT C-CTACAGCGCCGCGTGTTT TAT GAACGCACGGCGCTGTAGTG TTTTTCAGAGAAAAA TERM 367 295858 - 295896 + T 100 -20.4 -3.90048 | opp_overlap 295856 295855, overlap 295857 GACGCACACGAATTC CTACAGCGCCGCGTGTTT TAT GAACGCACGGCGCTGTAG TGTTTTTCAGAGAAA TERM 368 295929 - 295914 - T 76 -4 -4.96848 | TTTTTCAGAGAAAAA TGGAAA CGCG CTTCCA GAAACGTAAACAAGA Avi_0343 297481 - 296504 - | NADH-ubiquinone oxidoreductase Avi_0345 297906 - 297616 - | hypothetical protein Avi_0346 298159 - 299310 + | hypothetical protein pyrF 300025 - 299330 - | orotidine 5prime-monophosphate Avi_0348 300612 - 300025 - | hypothetical protein Avi_0349 301219 - 300626 - | methyltransferase TERM 369 301433 - 301405 - R 100 -12.4 -4.46775 | gap 1, opp_overlap 301405 CAGGTAAAACAGAAA CGCCGCCCCG-GC TTGC GCACGAGACGGCG TTATTGATTGATGGC dnaN 302700 - 301462 - | DNA polymerase III beta subunit TERM 370 302636 - 302655 + g 71 -7 -4.15044 | overlap 302637 ATCGGCTTGCCTTGA TCCGGGCG ACGA TGCCCGGC TTTATTCGGACGGGC Avi_0352 302880 - 303800 + | tetrapyrrole methylase family protein Avi_0353 303797 - 304183 + | hypothetical protein ugpA 304331 - 305629 + | ABC transporter substrate binding protein (sn-glycerol 3-phosphate) TERM 371 305654 - 305683 + F 100 -17.9 -3.51976 | opp_overlap 305641, overlap 305651 305655 ATTGAGATCTGATCT CTCCCGGAGGCGA TCTA TCGCCTCCGGGAC TTGCTTTGAAAGGTT TERM 372 305655 - 305682 + F 100 -21.4 -2.70704 | overlap 305654 305651 TTGAGATCTGATCTC TCCCGGAGGCGA TCTA TCGCCTCCGGGA CTTGCTTTGAAAGGT ugpA 305705 - 306586 + | ABC transporter membrane spanning protein (sn-Glycerol-3-phosphate) TERM 373 307051 - 307063 + G 73 -3.3 -4.85782 | overlap 307040 307052 TGCCGCTGCTGGCGT CTGCC ACC GGCAC TTTCTTTTTCCGGCA ugpE 306597 - 307439 + | ABC transporter membrane spanning protein (sn-Glycerol-3-phosphate) ugpC 307451 - 308557 + | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) TERM 374 308566 - 308595 + F 76 -10.7 -3.39936 | opp_overlap 308561 GGCCTGAAAAGCCGG TCGGCTCACGC CATTGCCA GCGAGAGCCGA TTGTCACGTTTCCCT TERM 375 308689 - 308657 - f 89 -14.3 -3.16683 | ATGTGACTGGATTAA CCCGAATTTGATAGG GTT CCCATAAAATTCGGG GACATCATGGGGGAC TERM 376 308733 - 308755 + G 83 -13.4 -3.56594 | overlap 308749 AAGCTTTTGTTTGCA GCCATGGCCG GGG CCGCCATGGC TTTGCCACGGTTTAG Avi_0360 308709 - 309200 + | hypothetical protein gshB 309287 - 310234 + | glutathione synthase TERM 377 310286 - 310334 + F 100 -11.7 -5.22258 | overlap 310289 CCCCGCCACGTTGGG TTTGCGAGAGTCTGTCAGATTCA TAT TGAACCAGACAGACTCTCGCTTC TTTTGTTTTCGTTTG TERM 378 310289 - 310331 + F 100 -22.2 -4.64486 | overlap 310286 CGCCACGTTGGGTTT GCGAGAGTCTGTCAGATTCA TAT TGAACCAGACAGACTCTCGC TTCTTTTGTTTTCGT TERM 379 311905 - 311893 - g 83 -4.7 -5.0538 | overlap 311894 311895 TGGCAGCCGAAAAAA GCGCC GAT GTCGC CCGCCGCGTTGCCGT Avi_0363 310683 - 312215 + | hypothetical protein TERM 380 312383 - 312359 - T 74 -10 -3.44998 | overlap 312357 312361 TATTCAGCAACAACA GATCCTCGGG ACAAG CCCGAGGATG ACGAAATGCCGAGAT TERM 381 312381 - 312361 - T 83 -12.6 -3.29142 | overlap 312359 312357 TTCAGCAACAACAGA TCCTCGGG ACAAG CCCGAGGA TGACGAAATGCCGAG TERM 382 312446 - 312416 - T 91 -10.5 -4.15044 | gap 1, opp_overlap 312414 312409 312417 312418, overlap 312417 312420 GGGTTTGTCAACAAA CTGAGGGCTACACC TTAT GCTGTAGCCCTC-G TCTTCATTGTTTGAT TERM 383 312446 - 312417 - T 72 -10.7 -3.08812 | opp_overlap 312417 312414 312409 312418, overlap 312416 312420 GGTTTGTCAACAAAC TGAGGGCTACACC TTAT GCTGTAGCCCTCG TCTTCATTGTTTGAT TERM 384 312417 - 312446 + T 89 -12.9 -3.38738 | opp_overlap 312416 312417 312420, overlap 312414 312409 312418 GGTTTGTCAACAAAC TGAGGGCTACACC TTAT GCTGTAGCCCTCG TCTTCATTGTTTGAT TERM 385 312418 - 312445 + T 84 -14.2 -2.62158 | opp_overlap 312416 312417 312420, overlap 312417 312414 312409 GTTTGTCAACAAACT GAGGGCTACACC TTAT GCTGTAGCCCTC GTCTTCATTGTTTGA TERM 386 312443 - 312420 - T 70 -11 -2.75825 | opp_overlap 312418 312417 312414 312409, overlap 312416 312417 TTGTCAACAAACTGA GGGCTACACC TTAT GCTGTAGCCC TCGTCTTCATTGTTT cysK 313467 - 312499 - | cysteine synthase TERM 387 313588 - 313569 - R 84 -3.5 -5.24129 | overlap 313570 313571 TCCGGGGAGAAAAAA CCCGCTG CAAAAC CAGCGAA AACAAATGTTTATTT rhtB 314220 - 313603 - | RhtB family transporter rhtB 314351 - 314983 + | RhtB family transporter Avi_0367 315876 - 314986 - | acetyltransferase protein dut 316349 - 315885 - | deoxyuridine 5primetriphosphate nucleotidohydrolase TERM 388 316548 - 316510 - g 71 -8.1 -4.08767 | gap 1, overlap 316511 316513 CGGATGCTGGTAAAA CCACGCTGACCGAAAAGC TGCT GCTGTTCGG-CGGCGCGA TCCAGCTGGCCGGTG TERM 389 317143 - 317118 - g 76 -12.5 -3.14344 | opp_overlap 317117 317118 GAGCTGGCGCAGGAA GCCTGCCGCCC CTTC GACCGGCAGGC CTTTCTCGAAGGCCA prfC 316434 - 318017 + | peptide chain release factor 3 TERM 390 318017 - 317996 - T 70 -10.1 -3.27029 | opp_overlap 317993, overlap 317994 GGCCATCAAGGAATA TCACGTCGC CAAG GCGGCGTGA TCACTGTTGGAAAAG TERM 391 318029 - 318080 + T 83 -10.2 -4.09739 | opp_overlap 318032, overlap 318035 GTGATCACTGTTGGA AAAGCTTGAGACCGCATCACGATT GAAA GATCGTGATGTGGTCTCATTCTGG TTTTACGCCGCTTCG TERM 392 318077 - 318032 - T 100 -13.4 -4.08945 | opp_overlap 318029 318035 ATCACTGTTGGAAAA GCTTGAGACCGCATCACGAT TGAAAG ATCGTGATGTGGTCTCATTC TGGTTTTACGCCGCT TERM 393 318035 - 318074 + T 100 -21 -3.68359 | opp_overlap 318032, overlap 318029 ACTGTTGGAAAAGCT TGAGACCGCATCACGATT GAAA GATCGTGATGTGGTCTCA TTCTGGTTTTACGCC Avi_0370 319486 - 318083 - | OtsA trehalose-6-phosphate synthase protein Avi_0371 320316 - 319516 - | Trehalose-6-phosphatase protein TERM 394 319966 - 319955 - G 76 -7.2 -4.45083 | TTGACAGCCAGAAAA GCCG GGCT CGGC TCACTGCGGATGATG TERM 395 320243 - 320262 + g 78 -2.8 -5.13741 | gap 1, opp_overlap 320245 320247, overlap 320246 320247 GCCTGAAGAAGATCA AACAGCAGC GCT GCTGC-GTC TTTTTGTTCGGTTCG TERM 396 320853 - 320865 + G 71 -10.5 -3.54029 | opp_overlap 320852 GTGCTTTCAAGCCAT CCGGC AGT GCCGG TTATCCTTGATCCGG thiD 320529 - 321386 + | phosphomethylpyrimidine kinase Avi_0373 321802 - 321398 - | hypothetical protein Avi_0375 322530 - 321955 - | tyrosine/serine protein phosphatase Avi_0377 323560 - 322649 - | pirin protein TERM 397 323706 - 323690 - H 70 -5.1 -4.36914 | CCGCTCTTCACAAAA CACAATG CCG CACTGCG AAATGTGATTGCCGC TERM 398 323989 - 324007 + G 74 -11.6 -3.61774 | TGCCTGGTACGGCGA CCGGCCGG AGC CAGGCCGG TTTCGCGATGTTCTG TERM 399 324320 - 324339 + G 71 -7.8 -4.07687 | opp_overlap 324307 324304, overlap 324321 CATCGCCCGATTGCG GCGATGGC CGAG GCCATCGG TTTTGCCGAAAGGCT Avi_0378 323837 - 324652 + | glutamine amidotransferase TERM 400 324645 - 324703 + T 100 -19.8 -4.68919 | opp_overlap 324657 324680, overlap 324648 324653 GGGTGACGGAAATGG CCGGCTAATCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGATTCTCTTG TTTTCGTTTGTCTTT TERM 401 324648 - 324700 + T 100 -22.3 -4.40882 | opp_overlap 324657 324680, overlap 324645 324653 TGACGGAAATGGCCG GCTAATCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGATTCTC TTGTTTTCGTTTGTC TERM 402 324653 - 324695 + T 100 -25.2 -3.97437 | opp_overlap 324657 324680, overlap 324648 324645 GAAATGGCCGGCTAA TCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGA TTCTCTTGTTTTCGT TERM 403 324691 - 324657 - T 100 -20.2 -2.52464 | opp_overlap 324653 324648 324645, overlap 324680 TGGCCGGCTAATCTA GAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTC TAGATTCTCTTGTTT Avi_0380 325719 - 324790 - | transcriptional regulator LysR family chrA 325810 - 326409 + | chromate transport protein chrA 326406 - 326927 + | chromate transport protein coaBC 328141 - 326924 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase fsrR 329270 - 328236 - | two component sensor kinase Avi_0385 329723 - 329286 - | two component response regulator TERM 404 329324 - 329313 - G 93 -5.8 -5.48825 | CATCACGGAAAAAAA CAGC CCGA GCTG ACGAATGGCATTGGC TERM 405 329627 - 329646 + g 87 -4.2 -5.47218 | gap 1 GCACGATCTCATTGT TGACC-CCG GCC CGGCGGACA TTTTTTTCGATCAGG Avi_0386 331213 - 329726 - | two component sensor kinase ubiB 332803 - 331220 - | 2-polyprenylphenol 6-hydroxylase ubiE 333621 - 332845 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 406 333235 - 333267 + g 86 -4.7 -5.26316 | CAGGGCCTCGGCATT GGCCTCGACGAAGGT GAG ATTGTCGGAGAGGCC TTTTTTCTGGGCTCG mutM 333812 - 334705 + | formamidopyrimidine-DNA glycosylase rpsT 334931 - 335197 + | 30S ribosomal protein S20 TERM 407 335226 - 335245 + F 93 -11.4 -4.28651 | overlap 335218 TTAACATTTTGATCA GCCTGGCT TTTT AGCCGGGC TTTTCGCGTTTTGAT TERM 408 335743 - 335720 - f 72 -11.1 -3.12351 | opp_overlap 335716 GGTTCTCATACGGAA CTCGTTTCC ATTTCA GGAAACGAG AGTTGGAGTTTGTGT TERM 409 336627 - 336594 - g 74 -11.2 -3.53811 | gap 2 GTCAGGCGCCGCAAA GCATTGGCCAGATGGC ACCT GCCATC-G-CCAATGC CGCAGCACCGCAGCG dnaA 336131 - 337705 + | chromosomal replication initiator protein DnaA TERM 410 337753 - 337786 + F 100 -24.1 -4.95302 | CTTTATTGTAGATCG CAGCGCCATTCGTCA TCAC TGACGAATGGCGCTG TTTTGTTGTGTTTGG Avi_0392 337914 - 338819 + | ABC transporter membrane spanning protein Avi_0393 339579 - 338839 - | methyltransferase protein hemN 340801 - 339620 - | oxygen-independent coproporphyrinogen III oxidase TERM 411 339918 - 339931 + g 70 -2.3 -4.72272 | overlap 339919 TCCGGGTGCTTTTCC GTGGC GGTC GCCAG TTTTTCATGGCCGCG rdgB 341452 - 340808 - | non-canonical purine NTP pyrophosphatase rdgB/HAM1 family TERM 412 340878 - 340894 + g 77 -2.1 -5.06816 | overlap 340852 340880 AGCGCTTGCGCGTTG CCCGGCT TCC ATCCGTG TTTTTCTTCCGAGGT Avi_0396 341878 - 341462 - | lactoylglutathione lyase TERM 413 341896 - 341909 + r 70 -3.7 -4.59773 | TGATGCTCTCTTTAT CCGGC AATC GCCTG TTTTTGCAGGTCCAC rph 342611 - 341892 - | ribonuclease PH TERM 414 342820 - 342796 - H 77 -7.1 -4.54727 | overlap 342790 TTTTGCAAAGGAAAA GCCGGTATG GTCCGCT CAAACCGGC GCTTCCTCACCAAAA TERM 415 343761 - 343737 - g 72 -8.5 -3.91911 | opp_overlap 343749 343759 TGGAGCGTAAGGAAA GCCTGATCGAG ATT CTCAACCTGGC CGAAAGCGGGCCTGG hrcA 342899 - 343981 + | heat-inducible transcription repressor HrcA TERM 416 344315 - 344325 + G 74 -8.2 -4.11394 | GATGCCAAGTCCTAT GCGG TAA CCGC TTTTGCCCGTGACAT grpE 344081 - 344695 + | GRPE protein TERM 417 344812 - 344789 - T 100 -13.8 -5.46706 | opp_overlap 344789 ACTGGAAAAGAAAAA GCGCTGCGCA GTGA TGCGCGGCGC TTTTTGCGTAATACC TERM 418 344789 - 344812 + T 100 -16 -4.68593 | opp_overlap 344789 ACTGGAAAAGAAAAA GCGCTGCGCA GTGA TGCGCGGCGC TTTTTGCGTAATACC ptsN 345309 - 344845 - | PTS IIA-like nitrogen-regulatory protein PtsN TERM 419 345372 - 345345 - R 100 -20 -4.2828 | opp_overlap 345350 GCCGACGCATGAAAA GGAAAGCGGTGG TCGG CCACCGCTTTCC GAGGGCGTGTCAGCC TERM 420 345350 - 345367 + r 86 -12.7 -3.53563 | opp_overlap 345345 CGCATGAAAAGGAAA GCGGTGG TCGG CCACCGC TTTCCGAGGGCGTGT Avi_0402 345948 - 345382 - | sigma-54 modulation protein TERM 421 345682 - 345694 + g 82 -10.5 -4.19258 | CAGCTTGCGCTTGTA GCGCC GCA GGCGC TTTTCGATCCGCTCT rpoN 347731 - 346283 - | RNA polymerase sigma-54 factor TERM 422 346374 - 346397 + g 70 -3.8 -4.64657 | overlap 346373 TATTTGGCAACCGTG CGGCGG GCAAGCTCGACG CCGCCG TTTTTCAGGCTTTCG TERM 423 347827 - 347837 + r 70 -6.8 -4.07568 | GCTGCGGCGTCATCA CCAG AGA CTGG TTTTGGCGAAGGAAA TERM 424 348034 - 348047 + r 76 -8.1 -4.18197 | opp_overlap 348043 ACGCGAGGCTCTTTG CGGCA CAGA TGCCG TTTTCAATACGGCAT Avi_0405 348887 - 348081 - | ABC transporter nucleotide binding/ATPase protein TERM 425 348594 - 348561 - G 71 -12.3 -2.87132 | opp_overlap 348591, overlap 348543 TTCCTGCGGTAGATA GCCGACGCCCAGCCG TGAG CGGCGGTACATCGGC ATCGAGGTCACGTCA yhbN 349465 - 348902 - | cell envelope biogenesis protein YhbN Avi_0408 350140 - 349475 - | hypothetical protein TERM 426 350714 - 350757 + G 78 -6.6 -4.65895 | gap 1 GATGAAATCACCGAT GCGCTCGCGTCCGGCAA-TCG TGT CGAATTGCGGGGCTTCGGCGC TTTTTCGGTGAAAAA TERM 427 350810 - 350773 - g 79 -7 -4.56597 | opp_overlap 350792, overlap 350774 TTTTTCGGTGAAAAA CCGCCCGT-CGCGGACCG GGCG CAATCCCCGCACGGG-GG ATACGGTTTTCGTCG ihfB 350609 - 350920 + | integration host factor beta subunit Avi_0411 351154 - 351504 + | hypothetical protein Avi_0413 351808 - 353025 + | SAM dependent methyltransferase TERM 428 353170 - 353156 - g 73 -3.4 -4.82901 | overlap 353158 GCTTTCCCAGAAAAA GACCCG TGA CGAGAC GCGAACGTTTCTGGC TERM 429 353357 - 353339 - g 71 -7.4 -4.1899 | GGAGGTCAGCGAAAA GGTCATGG CGT CCATTACC CGCAAGGATAATCCG trmH 353022 - 353906 + | rRNA methylase lspA 353903 - 354394 + | signal peptidase II TERM 430 354491 - 354507 + F 90 -7.9 -5.00616 | GCTTCATGCCGTGAG CCGCTCG CCC CAAGCGG TTTTTTCACGCAGCA TERM 431 354767 - 354753 - f 100 -2.8 -5.82316 | opp_overlap 354764, overlap 354764 ACGATGGAAAAAAAA CACC GAACTAA GGTG GGTTTCATCCTCCTC barA 354824 - 356458 + | two component sensor kinase/response regulator hybrid Avi_0418 356612 - 357487 + | hypothetical protein Avi_0421 357869 - 357534 - | hypothetical protein Avi_0422 357905 - 358849 + | transcriptional regulator LysR family TERM 432 358840 - 358867 + F 73 -3.5 -4.82901 | gap 1, overlap 358840 358841 ATTTCTGAAAGGCGA G-TGCGGTTG ATTCTGGTC CAACCGCAGC TTTTTGTGGGCAGGC TERM 433 359064 - 359052 - f 72 -6.9 -4.16016 | TGACGTCGCAAGAAA GCCGC GCA ACGGC AACCCCGATGATGGA TERM 434 359821 - 359808 - g 77 -2.3 -5.03314 | opp_overlap 359816 CCTATGTGGAAAAAA CCCAG ATGT CCGAG CGTCCGCCGCTTGGG TERM 435 360325 - 360352 + G 70 -4.1 -4.56597 | overlap 360315 360326 GCAACTGGCGGAAGA TCTGCCATTGT TGAAAC GCGATGGCGGG TTTTTGAGAGAGGGC mutS 359072 - 361723 + | DNA mismatch repair protein MutS family TERM 436 361868 - 361849 - f 81 -7.1 -4.60797 | CCGTGACAGACAAAA GCCGCCT CATTCC AAGCGGC AGGGAACAGATAACC TERM 437 362077 - 362024 - g 83 -5.8 -5.00616 | overlap 362028 362029 362031 CCCTTGTTGAAAAAA GCAAGCATTGATGGCCGGGAGGCG GCCCTG CGCCATCTGACCACCAATGGCAGC GGGTTGGAATGCGCC glnD 361892 - 364717 + | protein-P-II uridylyltransferase TERM 438 364817 - 364838 + G 70 -5.1 -4.41241 | gap 1, overlap 364820 GGCGGCAGCGCTTGG CAC-TGGGCC GAT GGCCGATGTG TTTTATGCGGCTTTC TERM 439 365882 - 365872 - g 74 -2.4 -5.00895 | opp_overlap 365878, overlap 365873 365874 GCGAGGATACAAAAA CCCC GAT GCGG TTCACCGGCATTTCG mviN 364719 - 366317 + | integral membrane protein MviN TERM 440 366530 - 366508 - g 74 -2.6 -4.89852 | opp_overlap 366516 366518, overlap 366510 366521 366522 GCAGATGGAGAAAAA CAGCTGGCGA CAA TCGGCAACCA AACAGGTGGCCGGGT TERM 441 366516 - 366549 + G 84 -3.8 -5.24129 | gap 1, opp_overlap 366510 366508 366521 366522 366533, overlap 366518 AGAAAAACAGCTGGC GACAATC-GGCAACC AAACA GGTGGCCGGGTTGCC TTTTTTCTGGAAACG Avi_0426 366304 - 366708 + | hypothetical protein TERM 442 366826 - 366836 + G 78 -3.2 -5.03145 | AATCATGAGCGAATT TCAG CCG CTGG TTTTTTCCGGCGTTC trpS 366815 - 367879 + | tryptophan-tRNA ligase TERM 443 368351 - 368394 + G 72 -9.5 -3.66654 | gap 1, opp_overlap 368349, overlap 368332 GCTCGGCCAAGGATG GGCCTG-GCCCGCTGGTC TCGATGATC GCCGGGCGGGCACAGGCC TTTCCCATTCCCGTG Avi_0429 367969 - 368460 + | Universal stress protein TERM 444 369124 - 369147 + G 75 -9.6 -3.90291 | gap 1, opp_overlap 369124 CGCGACGCTGAAGCA TGGCGT-GCAG AAC CTGCTGCGCCA TTTCATTCCCGAAGT Avi_0430 368624 - 369184 + | hypothetical protein TERM 445 369195 - 369220 + F 100 -13.9 -3.67792 | overlap 369193 TTTGATACGGTTTGG GCGCGGCGTCC CTTA GGTTGCCGCGC TTTCGATAAATGTGA Avi_0432 369264 - 369953 + | hypothetical protein TERM 446 370559 - 370543 - g 72 -5 -4.56597 | opp_overlap 370543 CTTGGCTTTGAAAAA GCTGGC GAACG GCCCGC TTATTACGCCGATGC Avi_0433 370126 - 370623 + | acetyltransferase fur 370682 - 371089 + | ferric uptake regulator plsC 371121 - 371918 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase miaB 372009 - 373442 + | miaB protein phoH 373484 - 374557 + | phosphate starvation inducible protein Avi_0440 374594 - 375097 + | hypothetical protein Avi_0441 375110 - 376147 + | hemolysin TERM 447 376176 - 376218 + F 77 -9.8 -3.61398 | opp_overlap 376178 376181, overlap 376181 CATCACCTATGGTTA AAGACGAGGCGGCAGTTTGT AAA AAGAACTGCCGCCTCTTCGA TTCTTGCAGGCAGGG TERM 448 376216 - 376178 - f 100 -14.7 -3.57792 | opp_overlap 376176 376181, overlap 376181 TCACCTATGGTTAAA GACGAGGCGGCAGTT TGTAAAAAG AACTGCCGCCTCTTC GATTCTTGCAGGCAG TERM 449 376181 - 376213 + F 100 -17.1 -3.28745 | opp_overlap 376178 376181, overlap 376176 CCTATGGTTAAAGAC GAGGCGGCAGTTTGT AAA AAGAACTGCCGCCTC TTCGATTCTTGCAGG TERM 450 376213 - 376181 - f 90 -15 -2.61695 | opp_overlap 376181 376176, overlap 376178 CCTATGGTTAAAGAC GAGGCGGCAGTT TGTAAAAAG AACTGCCGCCTC TTCGATTCTTGCAGG TERM 451 377895 - 377905 + G 70 -4.6 -4.55093 | AAATGCAACTTTTGG GCGG TAA CTGC TTTGTTATTATCTGC lnt 376377 - 377963 + | apolipoprotein N-acyltransferase Avi_0443 378110 - 378532 + | transcriptional regulator TERM 452 378552 - 378583 + F 70 -10.3 -3.13639 | opp_overlap 378560, overlap 378551 378560 GACCCTTCAGGGCTC GAAAAAAAGCGGC GATTAA GCCGCTTTTTTTA TGTCTTGGTCACGTT TERM 453 378560 - 378575 + F 100 -7.5 -5.80248 | opp_overlap 378560, overlap 378552 378551 AGGGCTCGAAAAAAA GCGGC GATTAA GCCGC TTTTTTTATGTCTTG TERM 454 378575 - 378560 - f 100 -7.5 -5.40474 | opp_overlap 378560 378552 378551 AGGGCTCGAAAAAAA GCGGC GATTAA GCCGC TTTTTTTATGTCTTG metK 378706 - 379944 + | S-adenosylmethionine synthetase trmB 379950 - 380648 + | tRNA (guanine-N(7)-)-methyltransferase TERM 455 380668 - 380654 - T 70 -10 -3.19668 | overlap 380649 CAGGACCTAATCCAA GGCTCT TGA AGAGCC GCGAGTCTTCCTGAC TERM 456 380823 - 380849 + T 95 -10.9 -4.55689 | opp_overlap 380823 GAGTGCGAATCAAAA CACCCTGCG AATGCATGG CGCAGGGTG TTTTCTGTCAATCAT TERM 457 380849 - 380823 - T 93 -10.9 -4.41494 | opp_overlap 380823 GAGTGCGAATCAAAA CACCCTGCG AATGCATGG CGCAGGGTG TTTTCTGTCAATCAT Avi_0446 381135 - 380878 - | hypothetical protein hspH 381707 - 381279 - | small heat shock protein iunH 381919 - 382863 + | inosine-uridine preferring nucleoside hydrolase TERM 458 382900 - 382910 + F 77 -3.2 -5.07652 | TCCTTTTTGGTGTCT TGGT CCG GCCA TTTTCTTTTGGCCGG Avi_0449 382946 - 383698 + | hydrolase TERM 459 383787 - 383831 + F 100 -17.9 -3.15663 | opp_overlap 383797, overlap 383797 TGCCTATCCTCTCGA TATTGCAGAACACAGCCTGCC TTA GGCTGGCGGTGTTCTGCAACG TTGATACGGCTGCAT TERM 460 383821 - 383797 - f 80 -11.3 -3.34962 | opp_overlap 383797 383787 CTCGATATTGCAGAA CACAGCCTGCC TTA GGCTGGCGGTG TTCTGCAACGTTGAT TERM 461 383797 - 383821 + F 80 -11.3 -3.31501 | opp_overlap 383797, overlap 383787 CTCGATATTGCAGAA CACAGCCTGCC TTA GGCTGGCGGTG TTCTGCAACGTTGAT TERM 462 384264 - 384242 - g 91 -17.8 -3.16742 | CGCAAGTTCCATGAA GCACGCATGG AGG CCATGCGTGC CGACATGCCGAAGGC Avi_0450 383909 - 384709 + | hypothetical protein TERM 463 384763 - 384789 + T 100 -22.4 -5.41359 | opp_overlap 384763 AGGCCTCAATGAAAA TCGCCGTGCGTC AGA GACGCACGGCGA TTTTTTGGTTTAATT TERM 464 384789 - 384763 - T 100 -22.4 -4.41047 | opp_overlap 384763 AGGCCTCAATGAAAA TCGCCGTGCGTC AGA GACGCACGGCGA TTTTTTGGTTTAATT mcpC 386710 - 384842 - | methyl-accepting chemotaxis protein Avi_0453 388747 - 387323 - | two component sensor kinase TERM 465 388002 - 388023 + g 76 -7.1 -4.4767 | opp_overlap 388000 388001 TTGATCTTGGAAACG GCAAGGCCG AGAT CGGCCAGGC TTTTCTGCTGCCTCA TERM 466 389454 - 389426 - g 100 -16.8 -4.28375 | gap 1, opp_overlap 389426 TCAAGACATCCAAAA CTGTCGGGCGGCT GAAA AGCCGCCCG-CAG TTTCTTGCTGTTCGC TERM 467 389426 - 389454 + G 100 -16.8 -4.33153 | gap 1, opp_overlap 389426 TCAAGACATCCAAAA CTGTCGGGCGGCT GAAA AGCCGCCCG-CAG TTTCTTGCTGTTCGC TERM 468 389579 - 389568 - g 76 -4.4 -4.72986 | opp_overlap 389568 CACCGTCACGAAAAA GCAT GGCA ATGC TGTTGAGCGCAATCG rnpA 389401 - 389790 + | ribonuclease P protein component TERM 469 390338 - 390319 - g 75 -8.6 -3.98282 | gap 1 CCTATACCAATGAAA CCGGCCTGA CCT TCA-GCCGG AAGATCTCGGTCGAC Avi_0455 389787 - 391649 + | inner membrane insertion protein TERM 470 391690 - 391670 - f 78 -9.6 -3.8766 | opp_overlap 391671, overlap 391665 391671 CCAGATGACAGCAAA GCCCCGGC CTCGC GCCGGGGT TTTTGTTTGATCGGT TERM 471 391671 - 391689 + F 100 -13.1 -5.33405 | opp_overlap 391665 391670 391671 CAGATGACAGCAAAG CCCCGGC CTCGC GCCGGGG TTTTTGTTTGATCGG TERM 472 391689 - 391671 - f 82 -13.1 -2.92114 | opp_overlap 391671, overlap 391665 391670 CAGATGACAGCAAAG CCCCGGC CTCGC GCCGGGG TTTTTGTTTGATCGG cgpA 391736 - 392395 + | GTP-binding protein TERM 473 392514 - 392483 - T 100 -21 -5.69473 | gap 1 GAGATTATAAAAAAA GCCCGGCGGTAG-GT GGC ACTCTACCGCCGGGC ACTGCCGAAACTGCC Avi_0459 393144 - 392587 - | hypothetical protein TERM 474 392681 - 392696 + g 79 -5.4 -4.75776 | GCAACGCCGCCGGTC TCATCC GTCA GGGTGA TTTTTCCCTTGGATT Avi_0461 394121 - 393399 - | hypothetical protein sigK 394699 - 394118 - | sigma factor TERM 475 394164 - 394150 - G 88 -11.4 -4.19238 | opp_overlap 394149 CTCTCAATGCCAAAA GGCTGC GTC GCAGCC ATGTCCTCATCGTGT argB 394801 - 395688 + | acetylglutamate kinase rbsK 396645 - 395746 - | ribokinase Avi_0466 397970 - 396732 - | hypothetical protein flgE 398422 - 399657 + | flagellar hook protein TERM 476 399842 - 399878 + T 100 -16.8 -5.03314 | gap 1, opp_overlap 399848, overlap 399842 399848 CCGATGGCGATTCCC GG-AAAACCTGCCGTGT GCCC GCACGGCAGGTTTTTCC TTTTTTCCGCATAGG TERM 477 399842 - 399877 + T 100 -19.2 -3.61506 | opp_overlap 399848, overlap 399842 399848 CCGATGGCGATTCCC GGAAAACCTGCCGTGT GCCC GCACGGCAGGTTTTTC CTTTTTTCCGCATAG TERM 478 399871 - 399848 - T 100 -13.9 -4.08767 | opp_overlap 399848 399842 399842 GCGATTCCCGGAAAA CCTGCCGTG TGCCCG CACGGCAGG TTTTTCCTTTTTTCC TERM 479 399848 - 399871 + T 100 -14.6 -5.25735 | opp_overlap 399848, overlap 399842 399842 GCGATTCCCGGAAAA CCTGCCGTGT GCCC GCACGGCAGG TTTTTCCTTTTTTCC Avi_0471 400785 - 399907 - | hypothetical protein dapD 401052 - 401909 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 480 402227 - 402202 - g 71 -11.1 -3.31144 | opp_overlap 402191 402189 402186 402202 GCCGGATGTCGAGAA CCTCTATGCCC GGCT GGGCACGGAGG GGCCGCATCTGATGT dapE 402014 - 403228 + | succinyl-diaminopimelate desuccinylase Avi_0475 403215 - 403811 + | hypothetical protein TERM 481 403998 - 404032 + G 75 -5.6 -4.67982 | overlap 404000 CCTTGCTACGCCCGG TTTGCTGAGGGCCAAG GAG CTCGGTCCGCAGGAGA TTTTCTTCGATAAGG Avi_0476 403945 - 404541 + | Disulfide bonded thioredoxin protein TERM 482 405684 - 405650 - g 100 -15.1 -4.1899 | opp_overlap 405639 405653, overlap 405653 TGATGGCACGGAAAA CAATGCCGGTGCCTT TGCCG ATGGCACCAGCATTG TCAGGTTAAAACAAC TERM 483 405681 - 405653 - g 88 -11 -4.21812 | opp_overlap 405639 405653, overlap 405650 TGGCACGGAAAACAA TGCCGGTGCCTT TGCCG ATGGCACCAGCA TTGTCAGGTTAAAAC Avi_0477 404706 - 405830 + | hydroxypyruvate reductase hslO 406717 - 405842 - | chaperonin heat shock protein 33 TERM 484 406036 - 406024 - G 71 -10.5 -3.53012 | CTTGTGGTTCGTAAA CGCGG ACG CCGCG CTCGTGGAAAAGCCG TERM 485 406275 - 406241 - G 73 -12.1 -3.14881 | gap 1 GAATTGTGCGATCAA CCCGCCAG-CGCGCCA GCTG TGGCGCGGCTTGCCGG AACTGTCTCGATCAA argF 408040 - 407123 - | ornithine carbamoyltransferase TERM 486 407834 - 407822 - G 84 -6.9 -4.82901 | CGTGCCGGACAAAAA CAGCG TCT CGCCG CCCAGTTGACGCATG argD 409264 - 408056 - | acetylornithine aminotransferase Avi_0482 409434 - 409315 - | hypothetical protein TERM 487 409350 - 409367 + g 84 -12.7 -3.66803 | opp_overlap 409350 GGAAAAAATCAAAAA TGCCGCC TTTC GGCGGCA TTTGCACTATTCCGG TERM 488 409367 - 409350 - G 100 -12.7 -5.25735 | opp_overlap 409350 GGAAAAAATCAAAAA TGCCGCC TTTC GGCGGCA TTTGCACTATTCCGG TERM 489 409433 - 409407 - G 72 -5.1 -4.63218 | opp_overlap 409407, overlap 409409 GCGTTGTCAACAAAA CATCGGGGCAA AGGCA TTGCTCCGACA TGTCCTTGCAAGCGC Avi_0484 409694 - 410245 + | hypothetical protein TERM 490 410284 - 410301 + T 100 -12.7 -5.27477 | opp_overlap 410284 CATGTCATAAAAAAA GCGAGCC GCCC GGCTCGC TTTTTTCGTTCCACT TERM 491 410301 - 410284 - T 100 -12.7 -5.626 | opp_overlap 410284 CATGTCATAAAAAAA GCGAGCC GCCC GGCTCGC TTTTTTCGTTCCACT phoB 411033 - 410350 - | phosphate regulon transcriptional regulatory protein PhoB TERM 492 410528 - 410515 - G 74 -8.1 -4.13014 | overlap 410517 410518 TTGAGAGCGGGAAAA CACCC GGCC GGGTG AGGTCATCAGGAACT TERM 493 411269 - 411305 + r 76 -3.7 -4.98061 | overlap 411270 ATCTCCGTCATGGTT TCATACCGGCAGCCA CAGATCA TGGCTCTTGGTATGC TTTTCTTTGATATCT TERM 494 411357 - 411388 + r 95 -15.3 -2.64616 | opp_overlap 411350 411360, overlap 411360 TATCAACACGTCATG CAATGCGGGGATG GGTCAA CATCCTCGCATTG TCATCTCAATCGGCG TERM 495 411360 - 411385 + r 78 -11.2 -3.47573 | opp_overlap 411350 411360, overlap 411357 CAACACGTCATGCAA TGCGGGGATG GGTCAA CATCCTCGCA TTGTCATCTCAATCG phoU 412101 - 411394 - | phosphate transport system regulatory protein PhoU TERM 496 411864 - 411882 + g 74 -8 -4.15565 | TGATTTCGCGCAGAT CGGCGGCC ATG GGCTGACG TTTTGCGATGGTGAC pstB 412960 - 412145 - | phosphate ABC transporter ATP-binding protein pstA 414396 - 413059 - | phosphate ABC transporter permease protein pstC 415880 - 414393 - | phosphate ABC transporter permease protein TERM 497 414477 - 414467 - G 79 -6.8 -4.62069 | GCGTGATGGCAAAAA GGGT AAT ACCC AGTGCGAAGGCCACC TERM 498 414819 - 414801 - G 76 -13.2 -3.02947 | CAGGGAGGAGACATA GGGGATCA GCA TGATCCCC ATCACGAAGCCTGCC TERM 499 415767 - 415747 - G 81 -3.9 -5.11389 | overlap 415749 AGAATAGAAACAAAA CTGCCATGA TAG CCATAGCGG GAATGCAGGGCAGAC TERM 500 415963 - 416007 + r 100 -15.7 -3.33815 | opp_overlap 415954 415951 415948 415962 415965, overlap 415965 415966 CATCAACCGCAACAT CATGATGAGGCTGGCGCGGAC AGT GTTCGCGCCAGCCTCAAAGTC TTACTTGCCAGCGGT TERM 501 415965 - 416005 + r 100 -18.3 -3.23853 | opp_overlap 415954 415951 415948 415965 415962, overlap 415963 415966 TCAACCGCAACATCA TGATGAGGCTGGCGCGGAC AGT GTTCGCGCCAGCCTCAAAG TCTTACTTGCCAGCG TERM 502 416004 - 415965 - R 95 -15.8 -2.76046 | gap 1, opp_overlap 415963 415965 415966, overlap 415954 415951 415948 415962 TCAACCGCAACATCA TGATGAGGCTGGCGCGGAC AGT GTTCGCGCCAGCCTCAA-A GTCTTACTTGCCAGC TERM 503 415966 - 416004 + r 100 -19.6 -2.54098 | opp_overlap 415954 415951 415948 415965 415962, overlap 415965 415963 CAACCGCAACATCAT GATGAGGCTGGCGCGGAC AGT GTTCGCGCCAGCCTCAAA GTCTTACTTGCCAGC Avi_0495 417033 - 416008 - | ABC transporter substrate binding protein (phosphate) phoR 418486 - 417227 - | phosphate regulon sensor kinase PhoR TERM 504 418534 - 418549 + H 72 -5.4 -4.58395 | GAGAGATACCCTATT CCTGTT GCAT GACAGG TTTTTACCGCCTACG Avi_0497 418697 - 419581 + | hypothetical protein Avi_0499 420977 - 419688 - | hypothetical protein TERM 505 420152 - 420142 - G 83 -8.2 -4.64598 | opp_overlap 420141 CAATCATTGGAAAAA CCGC GTT GCGG ATCGATTGTCTTTGG TERM 506 421232 - 421253 + H 82 -8.1 -4.56597 | AGGTCTGCTAATCTT TTGACGTTT ACGC GAACGTCAA TTTTTCGAGGCCCAA TERM 507 421310 - 421324 + G 74 -6.4 -4.42287 | overlap 421309 TCACCTCAGACTTCC GGTGAT TGC ATCGCC TTTGTTCATTATTTC Avi_0500 421269 - 422234 + | hypothetical protein TERM 508 423140 - 423158 + G 74 -8.1 -4.11692 | ATGAGCTGTTGGAGC GCGTTGG CTTGA CCAGCGC TTTTGCAGATCGCTA Avi_0501 422779 - 423891 + | ABC transporter nucleotide binding/ATPase protein (proline/glycine/betaine) Avi_0502 423888 - 424538 + | ABC transporter membrane spanning protein (proline/glycine/betaine) TERM 509 424654 - 424664 + G 71 -8.2 -4.0371 | overlap 424642 CTGCCTGATCGGCTT GCCC GTC GGGC TTTATGTCGGACATA Avi_0503 424535 - 425212 + | ABC transporter Avi_0504 425276 - 426190 + | ABC transporter substrate binding protein (proline/glycine/betaine) TERM 510 426239 - 426191 - g 74 -13.8 -2.55551 | gap 1, opp_overlap 426209 CACAAGCTGAACTGA TGTGGGGTTGGCAGGCGAGCTGC ATCC GCTGTTCGCCTGCCAACGCC-CG GGGCCTACCAGCGAC TERM 511 426366 - 426393 + G 93 -17.8 -3.25823 | gap 1, opp_overlap 426358 426355 GAAAGATGCGGAGAT CG-GGCAGGAGGG CCA CCCTCCTGCCACG TTGCTCTCCGCCACG hutC 426190 - 427095 + | histidine utilization repressor TERM 512 428331 - 428348 + G 71 -11.3 -3.22298 | TTCCTCGCCACCGAT GCCGGAA GCCA TTCCGGC TTGATGATCGCTCAA hutH 427224 - 428711 + | histidine ammonia-lyase Avi_0507 428941 - 429258 + | hypothetical protein Avi_0508 430603 - 429371 - | aminotransferase Avi_0509 431892 - 430606 - | ABC transporter membrane spanning protein Avi_0510 432407 - 431889 - | ABC transporter membrane spanning protein TERM 513 432366 - 432387 + g 93 -12.3 -4.37886 | gap 1, opp_overlap 432366, overlap 432366 GATGCGCTTCAACCA CCCC-CACCC GCC GGGTGAGGGG TTTTCTGAAGAATGA TERM 514 432366 - 432386 + g 79 -12.5 -3.2241 | opp_overlap 432366, overlap 432366 GATGCGCTTCAACCA CCCCCACCC GCC GGGTGAGGG GTTTTCTGAAGAATG TERM 515 432386 - 432366 - G 80 -14.7 -2.71144 | opp_overlap 432366 432366 GATGCGCTTCAACCA CCCCCACCC GCC GGGTGAGGG GTTTTCTGAAGAATG Avi_0511 433413 - 432418 - | C4-dicarboxylate-binding protein TERM 516 433383 - 433394 + g 75 -5.8 -4.64676 | opp_overlap 433362, overlap 433379 433377 CGAGCATGATGGCCG GCAG CCGG CTGC TTTTGTTGAGAGTGA TERM 517 433920 - 433932 + G 75 -9.1 -4.07568 | CACTGTTCGGTACGG CGCTG ATG CAGCG TTTTGCGCCACAGCA Avi_0512 433595 - 434458 + | transcriptional regulator LysR family TERM 518 435182 - 435125 - g 85 -14.9 -3.14132 | gap 1, opp_overlap 435125, overlap 435149 TCTTTCGGCGAGGAA CAGGTGATGCCGCCACC-TCAGCAAGCC GGT GGCCTGCTGACAATGCTGGCAACACCCG TTTCCGTGCTCAGGG Avi_0513 434492 - 435784 + | MFS permease TERM 519 435822 - 435810 - f 76 -7.7 -4.18494 | opp_overlap 435809 435810 CATTGTCAGGGAAAA GGAGA GGC TCTCC GTTTCAAATAGGTCG Avi_0514 435922 - 436392 + | hypothetical protein TERM 520 436677 - 436663 - f 72 -5.8 -4.39386 | GGTAAATTATGAAAA TAACAT AAG ATGTTA CAATTGACGTGTTTA TERM 521 437548 - 437596 + G 81 -11 -3.91897 | gap 1, overlap 437553 GGGCTACGATCTCCA GCCGTTGCAGGCCGGGATCGGCA CCAT TGCCAATGCTGTCCTGC-ATGGC TTTATCGATACACCG Avi_0516 436775 - 438265 + | coenzyme A transferase Avi_0517 438328 - 439734 + | hypothetical protein TERM 522 440348 - 440364 + G 78 -7.9 -4.54047 | overlap 440349 CGAGATTCGTTTCGA TCTCGCC TAT GGCGGGG TTTTCTATGCGCTGG TERM 523 440416 - 440448 + G 84 -15.6 -3.01712 | gap 1, overlap 440420 TAACTATCGAGCCCG GCAATGCCCGCCGCC TGGT GGAGGCGGGCAT-GC TGTTAAAGGGCGAAA TERM 524 440420 - 440445 + G 86 -16.1 -2.73875 | overlap 440416 TATCGAGCCCGGCAA TGCCCGCCGCC TGGT GGAGGCGGGCA TGCTGTTAAAGGGCG Avi_0518 439842 - 440885 + | hypothetical protein Avi_0519 441222 - 441962 + | Fnr-like transcriptional activator TERM 525 442059 - 442048 - f 85 -3 -5.4593 | opp_overlap 442048 CTAAAACAAGAAAAA CTAA AATT TTAG CTTATTGCTTTAGTC TERM 526 442572 - 442586 + G 79 -7.1 -4.56597 | CAGGCCGCCCGTCAG GTCGG CATTA CCGAC TTTTTGACCAAGCCG pleD 442287 - 442688 + | two component response regulator Avi_0521 442685 - 443179 + | hypothetical protein TERM 527 445142 - 445125 - g 71 -11.3 -3.29471 | overlap 445138 TCTTGACGAGATTAA CGGGCTT GATG AAGCCCG TCATGACGAACTGGT TERM 528 445295 - 445271 - g 74 -11.5 -3.54459 | GCAATCCCCGCGAAA TCGATCGCGTG CTC CACACGATCAA GGGGGCTGCCGTCAA Avi_0522 443179 - 445434 + | two component sensor kinase/response regulator hybrid TERM 529 445824 - 445805 - g 76 -13.6 -2.71763 | opp_overlap 445808, overlap 445808 CCGACAAGGATATGA CAACGCGG ATGG CCGCGTTG AATGCCGGGGCTATC Avi_0523 445552 - 446631 + | Response regulator protein TERM 530 447435 - 447462 + G 82 -6.2 -4.8622 | gap 1 TCGCCTTGCCTTGCG CCGCGCTGCGACC TCG GGTGACAGC-CGG TTTTTCCTTGGCACG pyrC 446740 - 447792 + | dihydroorotase TERM 531 448157 - 448167 + G 77 -8.2 -4.27316 | CATGGTCGGAATTCT GGCC TAT GGCC TTTTCACTTCGACCC Avi_0525 448005 - 449180 + | GGDEF family protein pyrE 449446 - 450138 + | orotate phosphoribosyltransferase TERM 532 450148 - 450182 + F 77 -8.5 -4.14725 | opp_overlap 450155, overlap 450157 GGTTGAGGCTGCCTT GCGAAGATCCGCCAG AGTGG CTGGCATTTCTTCGC TTTCTGCTTTAAATC TERM 533 451093 - 451062 - g 81 -13 -3.59984 | overlap 451069 GCAAAATTGACAGAA GAGCAGATCGCCAA GGCC TTGGCGCTCGGCTC CAAAGCCGCAGCGGT scrK 450237 - 451163 + | fructokinase Avi_0533 451608 - 451216 - | hypothetical protein TERM 534 451565 - 451544 - G 71 -13.1 -2.53263 | opp_overlap 451544 451546 451549, overlap 451549 CCGAGGCCGAATTGA TAGAAGGGC CGAA GCCCTTCTA TGCTGTCAGTCGGTC TERM 535 451544 - 451565 + g 71 -13.1 -2.64933 | opp_overlap 451544 451549, overlap 451546 451549 CCGAGGCCGAATTGA TAGAAGGGC CGAA GCCCTTCTA TGCTGTCAGTCGGTC pgi 453236 - 451611 - | glucose-6-phosphate isomerase fadD 455116 - 453416 - | long-chain-fatty-acid-CoA-ligase TERM 536 454883 - 454899 + g 72 -6.5 -4.2717 | overlap 454877 GCTGAACCCTTCCGC TTGCAGC CAG GCGGCAA TTTTCGTCGCCTGCT TERM 537 455494 - 455480 - g 90 -11.4 -4.2558 | TATCGTTGAGGAAAA TCCGCC TCT GGCGGA GTTGGAAACGGCAGT Avi_0536 455424 - 455705 + | hypothetical protein TERM 538 455778 - 455746 - T 100 -17.1 -4.21974 | opp_overlap 455748 455752, overlap 455748 455752 GCACCACTCAATAAA TATAAAGGCCCGGGA AAA CCCCGGGCCTTTATC ATTTCAGTTGTGGTG TERM 539 455776 - 455748 - T 100 -19.7 -3.70709 | opp_overlap 455748 455752, overlap 455746 455752 ACCACTCAATAAATA TAAAGGCCCGGGA AAA CCCCGGGCCTTTA TCATTTCAGTTGTGG TERM 540 455748 - 455776 + T 100 -19 -2.98778 | opp_overlap 455748 455746 455752, overlap 455752 ACCACTCAATAAATA TAAAGGCCCGGG AAAAC CCCGGGCCTTTA TCATTTCAGTTGTGG TERM 541 455772 - 455752 - T 100 -16.1 -4.46072 | opp_overlap 455748 455752, overlap 455748 455746 CTCAATAAATATAAA GGCCCGGGA AAA CCCCGGGCC TTTATCATTTCAGTT TERM 542 455752 - 455772 + T 100 -15.4 -4.15328 | opp_overlap 455752 455748 455746, overlap 455748 CTCAATAAATATAAA GGCCCGGG AAAAC CCCGGGCC TTTATCATTTCAGTT glgX 457893 - 455806 - | glycogen debranching enzyme GlgX TERM 543 457677 - 457703 + g 75 -8.7 -3.98683 | gap 1, opp_overlap 457665 AGAGCGCACCCGGTT TCAGGC-CGGGT ACAA ACCCGTGCCAGA TTTCATTGGTGTAAT TERM 544 458715 - 458702 - g 83 -8.1 -4.70921 | GACAATACAAACAAA CGCTC TACT GAGCG GCTCGACATCCCACA Avi_0538 458087 - 458884 + | dehydrogenase exsF 459064 - 459447 + | two component response regulator truA 460254 - 459475 - | tRNA pseudouridine synthase A TERM 545 459564 - 459533 - G 100 -10.8 -5.03314 | gap 1, overlap 459535 459537 TCGACCTGCAAAAAA TACAGGCCCTGCGGC GGT GCCACCGGGCC-GCA GGCCTTGCGGTCGCG TERM 546 459562 - 459535 - G 88 -11.2 -4.14633 | gap 1, overlap 459533 459537 GACCTGCAAAAAATA CAGGCCCTGCGGC GGT GCCACCGGGCC-G CAGGCCTTGCGGTCG TERM 547 459561 - 459537 - G 95 -14.9 -3.66166 | overlap 459535 459533 CCTGCAAAAAATACA GGCCCTGCGGC GGT GCCACCGGGCC GCAGGCCTTGCGGTC fmt 461216 - 460254 - | methionyl-tRNA formyltransferase TERM 548 460770 - 460788 + g 73 -11.6 -3.43217 | GCGCGTCAGGGCGAC GGGGCCGG TGT CCAGCCCC TTGTCCATCTTCATC def 461865 - 461335 - | peptide deformylase apaG 462331 - 461939 - | apaG protein TERM 549 462654 - 462682 + r 100 -13.2 -4.14392 | overlap 462655 CTGCACCTTCATGCG GTTCAGGAGGCG CGTCA CGCCTCCTGAAA TTTTACGGCTTGAGA TERM 550 462655 - 462681 + r 100 -16.7 -3.08314 | overlap 462654 TGCACCTTCATGCGG TTCAGGAGGCG CGTCA CGCCTCCTGAA ATTTTACGGCTTGAG metZ 463919 - 462735 - | O-succinylhomoserine sulfhydrylase TERM 551 463970 - 463949 - H 100 -4.4 -5.80817 | gap 1, opp_overlap 463949 463963, overlap 463963 TCGAACACAAAAAAA CCGGTCGCG AAATA CG-GACCAG TTTGCACGTGTCCGA TERM 552 464740 - 464726 - g 74 -11.4 -3.62591 | TGCACAAGGCCGAAA CGCTGG TGG CCAGCG AGACGCCCAATGTCT dcd 464200 - 465276 + | 2prime-deoxycytidine 5prime-triphosphate deaminase TERM 553 465266 - 465283 + T 72 -8.4 -3.84514 | TCTCCAAGCATTTTC GCGCAG CCTGAT CTGCGC TTTCATGCTTGACAT Avi_0546 466264 - 465548 - | transposase TERM 554 466334 - 466367 + H 89 -13.4 -3.31322 | opp_overlap 466343, overlap 466343 TACAATATGCACATC TCGACATGATACGA TTGTTC TCGTATTATGTCGA TTATGAAGACTTACC Avi_0547 466361 - 466711 + | transcriptional regulator ArsR family Avi_0548 467278 - 466892 - | hypothetical protein TERM 555 467299 - 467317 + r 93 -8.8 -5.00884 | opp_overlap 467293 467292, overlap 467293 CGCGAGAACGGCCAA GGGCCTGA TCT TCAGCCCC TTTTTTGCGCCAGAT Avi_0549 467652 - 467275 - | hypothetical protein Avi_0550 468503 - 467802 - | polyketide biosynthesis associated protein TERM 556 467979 - 467961 - G 86 -3 -5.5762 | opp_overlap 467977, overlap 467977 ATCAAAGACAAAAAA GGGCACAC CGT GAATACCC ATGCCATGGGCCTGC Avi_0551 468621 - 469301 + | carboxylesterase protein gguC 470292 - 469399 - | hypothetical protein Avi_0553 471793 - 470432 - | hypothetical protein TERM 557 471886 - 471872 - H 82 -2.8 -5.24291 | AAAATTAAAATAAAA TTAACG TGG CGATAA CTATCAATTTCGTGA TERM 558 471903 - 471915 + H 70 -5.5 -4.42238 | TATCAATTTCGTGAT CGTGA AAA TCGCG TTTTGATTGAAATAC TERM 559 472460 - 472416 - g 73 -11.5 -3.4582 | opp_overlap 472415, overlap 472414 TGATGTCACCAAATA CAGGCGAAATTGTTCGGCTTG GAA CGATCGAAACAATTTCGCCCG ATTGCATCGACTCGC Avi_0554 472157 - 473032 + | transcriptional regulator LysR family Avi_0555 474115 - 473273 - | transcriptional regulator LysR family TERM 560 473722 - 473700 - G 76 -12.7 -3.09116 | overlap 473697 CCGAGAGACAAATCA GCCTCCCCC TTTTC GAGGGAGGC AACCGATGAGCTTGC attY 474389 - 474898 + | glutathione S-transferase Avi_0561 476132 - 476833 + | transposase protein TERM 561 477296 - 477276 - f 74 -7.6 -4.07568 | gap 1 TGCGGGCTTTCAAAA CCG-CTTGG TTTG CCAAGGCGG CACGCAAAGCTCGCA Avi_0563 477471 - 478187 + | transposase protein Avi_0566 479471 - 478470 - | hypothetical protein TERM 562 479291 - 479323 + g 79 -5.5 -4.75404 | CGATGACGTGAAGTC CAGTCGAACCGGTGT CCA AGATCGCCTCGACTG TTTTTGCTCCGATTT Avi_0567 480973 - 479498 - | secretion protein HlyD family Avi_0570 483123 - 480970 - | ABC transporter nucleotide binding/ATPase protein TERM 563 483143 - 483194 + r 100 -12.4 -4.68908 | gap 1, opp_overlap 483143 483144, overlap 483144 GCCTCCCACCAAGAA CTGCTGAGCCGGCT-TCGGTCAAAT TCA ATTTGACGGACATCCGGCCCAGCAC TTTGTTTTGAATCAG TERM 564 483194 - 483143 - R 100 -14.6 -3.71848 | gap 1, opp_overlap 483143 483144, overlap 483144 GCCTCCCACCAAGAA CTGCTGAGCCGGCT-TCGGTCAAAT TCA ATTTGACGGACATCCGGCCCAGCAC TTTGTTTTGAATCAG TERM 565 483193 - 483144 - R 100 -18.1 -2.82895 | gap 1, opp_overlap 483144 483143, overlap 483143 CCTCCCACCAAGAAC TGCTGAGCCGGCT-TCGGTCAAAT TCA ATTTGACGGACATCCGGCCCAGCA CTTTGTTTTGAATCA TERM 566 483144 - 483193 + r 100 -15.9 -3.40622 | gap 1, opp_overlap 483143 483144, overlap 483143 CCTCCCACCAAGAAC TGCTGAGCCGGCT-TCGGTCAAAT TCA ATTTGACGGACATCCGGCCCAGCA CTTTGTTTTGAATCA Avi_0571 491265 - 483217 - | hypothetical protein TERM 567 490778 - 490760 - G 86 -5.3 -5.0925 | gap 1, opp_overlap 490760 CCTGAAAATGAAAAA GGGTC-AC TCGA GTCGACCC TGCCTTCGTAACCAA TERM 568 490988 - 490976 - G 83 -5.5 -5.00616 | overlap 490977 490978 GCGGGCGGGAAAAAA CTGCC GGC AGCAG CACCAACGAAGGCGC Avi_0572 492924 - 491878 - | hypothetical protein TERM 569 492042 - 492070 + g 76 -4.5 -4.86731 | GACCTGCACGCCCCT GCCGGAAGAATCG CTC CGCTTGTTTTGGC TTTTCTTTGAAGCCA TERM 570 492790 - 492811 + g 71 -7.2 -4.11394 | overlap 492791 492793 CTTGTTTTTGATTGG CGACGCCG GTTCAA CGGCGTCA TTTTCGCGATCCGCT TERM 571 493009 - 492991 - R 84 -7.5 -4.65916 | opp_overlap 492991 TCTAGGCGAAGAAAA GGATGAA AACTA TTCATCC TTCATGTATATTATA Avi_0574 494532 - 494188 - | hypothetical protein Avi_0575 494844 - 494605 - | hypothetical protein TERM 572 495684 - 495706 + G 77 -7.6 -4.32857 | overlap 495686 CAGCCAGATCTCCCA CGCTCTGCTC TAT GAGCAGCGGG TTTATATTTCGGACG Avi_0576 495277 - 496407 + | hypothetical protein Avi_0577 498640 - 496646 - | glycosyltransferase TERM 573 498581 - 498602 + g 73 -12.9 -2.73701 | opp_overlap 498579 498578, overlap 498579 498580 TATATGTGAAAATGG CGCGGCGCG TTTC CTCGCCGCG ATTCCTTTGCTAAAC TERM 574 499247 - 499257 + G 75 -5.4 -4.57073 | CGGCGCAGGAGGCCA TGCT GAA AGCA TTTTTCCCGGCGATC TERM 575 499264 - 499279 + G 70 -11.8 -2.75081 | overlap 499262 499261 CTGAAAGCATTTTTC CCGGCG ATCA CGCCGG TGGGTTTTGCCGATC TERM 576 499353 - 499331 - g 100 -4.1 -5.88197 | gap 1, opp_overlap 499336, overlap 499335 TGAAACAGAAAAAAA TCCAGGCGGC CTTC GCCGA-TGGA TTGCAGCTCTCGTTT Avi_0578 498658 - 499578 + | ABC transporter substrate binding protein (amino acid) Avi_0579 500011 - 499598 - | hypothetical protein Avi_0583 500860 - 500186 - | bacteriophage repressor protein TERM 577 500790 - 500770 - G 73 -11.8 -3.1505 | ACGAGGTTGGATCAA GGCCGGCC TTTCG GGCCAGCC CGGACGGCGTCAGAT Avi_0584 501732 - 501085 - | two component response regulator Avi_0585 502096 - 502527 + | hypothetical protein pyrD 502524 - 503615 + | dihydroorotate dehydrogenase dinF 504934 - 503591 - | DNA-damage-inducible protein F Avi_0588 505547 - 504978 - | hypothetical protein Avi_0589 505836 - 505570 - | hypothetical protein TERM 578 505796 - 505753 - G 71 -7.7 -3.96624 | TATCCGCATGACAAA GCCG-ACGATCACCGAAAC GACGAGCA GTTT-GATGATCGTTCGGC CAATCGAATCGCCCA TERM 579 506127 - 506112 - g 77 -11.8 -3.53444 | GGATGCTCTCGGAAA GCGGCG ATCA CGCCGC TGCCGCAGAGCTGAT TERM 580 506611 - 506594 - g 75 -5.6 -4.63184 | AAGGCACGGGAAAAA CAGATC TACGAT GATCTG GCGATCGCGGATTTG Avi_0591 506006 - 506986 + | methyltransferase Avi_0592 507109 - 507753 + | hypothetical protein Avi_0593 507853 - 508815 + | hydrolase protein TERM 581 509582 - 509596 + G 76 -3.4 -4.92314 | overlap 509570 TTGGCCGAAGATCAG GCTCTG GTA CGGCGC TTTTTATGGATTGAT Avi_0596 509280 - 509831 + | hypothetical protein TERM 582 509846 - 509880 + T 100 -12.3 -4.41494 | gap 1, opp_overlap 509851 509852, overlap 509852 AACCCTATGACCACA TAAAAGCGGGGAGGCA TTTC TGCCTCCCCG-TTCTA TTTTGCTTGGCAATC TERM 583 509876 - 509851 - T 100 -14.7 -4.58424 | opp_overlap 509846 509852, overlap 509852 TATGACCACATAAAA GCGGGGAGGCA TTTC TGCCTCCCCGT TCTATTTTGCTTGGC TERM 584 509852 - 509875 + T 100 -18.2 -4.02762 | opp_overlap 509851 509852, overlap 509846 ATGACCACATAAAAG CGGGGAGGCA TTTC TGCCTCCCCG TTCTATTTTGCTTGG TERM 585 509875 - 509852 - T 100 -18.2 -3.34332 | opp_overlap 509852 509846, overlap 509851 ATGACCACATAAAAG CGGGGAGGCA TTTC TGCCTCCCCG TTCTATTTTGCTTGG fadB 512107 - 509894 - | enoyl-CoA hydratase TERM 586 510475 - 510494 + g 78 -8.6 -4.21194 | gap 1, opp_overlap 510469 GCGGACCAACCGGCA TGCCGGCGA ATT TCGC-GGCA TTTTCGATCATCACC Avi_0598 513331 - 512123 - | acyl-CoA thiolase acd 515200 - 513407 - | acyl-CoA dehydrogenase TERM 587 514747 - 514760 + g 82 -6.7 -4.72497 | CCTCGACCATTTTCG GCAGA TAGG TCTGC TTTTGTTGGTCGGTG TERM 588 515285 - 515260 - H 72 -6.3 -4.36914 | TTCTGTCTTACAAAA TATTGACGT GCGCGTAA ACGTCAATA CGCAAAAATGTGAAT TERM 589 516874 - 516836 - g 76 -13.1 -3.14344 | GATCTGGCGCACCAA CAGGCCGCCCAGCGGCT GGAAG AGCGGCTGGACGATCTG ACCCGCATGCTGGAA TERM 590 517483 - 517505 + G 76 -12.8 -3.14564 | CCGTACCGTCGAGGC TTTGCACCAG ACC CTGGTGCAGA TTGCTGAAAAACTCG TERM 591 518023 - 518003 - g 74 -7.6 -4.11216 | gap 1, opp_overlap 518002 GCGGCAGGTGTAAAA CCGG-CATC AGCG GATGACCGG ATGGATTTCATTGCC TERM 592 518804 - 518786 - g 70 -2.3 -4.72272 | overlap 518787 GGGCTTTATGAAAAA GGCACTG GCGTT CAGCGCG ACCTGACACGGGCGA Avi_0601 515606 - 519433 + | hypothetical protein TERM 593 520382 - 520409 + G 83 -13.4 -3.47322 | TTTCCTCGTCGGCGT GCTGACGCCGAT GGGC ATCGGCGGCGGC TTCATTCTGGTGCCA Avi_0602 519822 - 520745 + | hypothetical protein Avi_0603 520772 - 521560 + | hypothetical protein Avi_0605 521666 - 523420 + | alkaline phosphatase TERM 594 523469 - 523434 - f 70 -11.1 -2.78715 | gap 1, opp_overlap 523436 523437 AAGCCTGCTATGATA CTCGGCTCCGGGTGCG GATAT CGCATCCGGAGCCT-G TTCTATTGAGACTTC TERM 595 523436 - 523469 + F 100 -17.5 -3.67498 | gap 1, opp_overlap 523434, overlap 523437 GCCTGCTATGATACT C-GGCTCCGGGTGCGG ATA TCGCATCCGGAGCCTG TTCTATTGAGACTTC TERM 596 523437 - 523467 + F 100 -21.2 -3.41292 | opp_overlap 523434, overlap 523436 CCTGCTATGATACTC GGCTCCGGGTGCGG ATA TCGCATCCGGAGCC TGTTCTATTGAGACT TERM 597 523501 - 523517 + F 71 -9.5 -3.54256 | overlap 523499 ACCATTTGTTTTTAC GCATTTC CTG GAAATGC TCTATTTTTGAGGGT TERM 598 523790 - 523815 + G 87 -8.1 -4.77036 | TGCGCGGTTTTATGG CGCCGCCGCTG AAGG CGGAAGCGGCG TTTTTCGTGCTGACG Avi_0606 523576 - 524043 + | hypothetical protein Avi_0607 524050 - 524763 + | ABC transporter nucleotide binding/ATPase protein Avi_0608 524760 - 526037 + | permease component protein Avi_0609 526158 - 527543 + | acid phosphatase protein pleD 529601 - 527652 - | two component response regulator TERM 599 529291 - 529280 - G 72 -5.8 -4.48449 | overlap 529282 CCAGTAAAATAGAAA GAGC TCCG GCTC CAGCGCCGATCCCAC TERM 600 529974 - 529992 + G 77 -10.2 -3.80733 | GGCGGGCAGCATGCT GGCGGCGC TGG GCGTCGTC TTGTTGTCCAATGCC Avi_0612 529864 - 530511 + | hypothetical protein Avi_0614 530611 - 531381 + | ABC transporter substrate binding protein (amino acid) TERM 601 533163 - 533142 - g 74 -8 -4.15565 | opp_overlap 533141 533142 CGCAGGACCCGAAAA TTCCCGCC TATGCG GGCGGAAA ATTTCCGCTCTCGAC TERM 602 533423 - 533437 + G 77 -10 -3.85817 | overlap 533404 CTGGAGCGGTGGCGG GCCAAG CCG CTTGGC TTTGTGGCGACGGAT lhr 531452 - 533959 + | large atp-dependant helicase-related protein Avi_0616 533991 - 534719 + | hypothetical protein Avi_0617 536150 - 534741 - | serine/threonine protein kinase protein TERM 603 535205 - 535216 + g 71 -7.2 -4.13654 | overlap 535197 GTGCATTGGCCAGGG CCGC CGTG GCGG TTTGTGGTTTCAGCA TERM 604 535502 - 535514 + g 72 -6.2 -4.34402 | TCAGCCGCTGCGGAT CGCC AAAGG GGCG TTTTCCTGTGGCAAA Avi_0618 536922 - 536152 - | phosphoesterase protein TERM 605 537011 - 537044 + r 72 -8.9 -3.73775 | gap 1, opp_overlap 537014, overlap 537014 GTGAGGGGGCATGAA AAATCCCCTCTG-GCA CGA TGCGCAGAGGGGATGA TTTGGTAAGCCTGCC TERM 606 537014 - 537041 + r 90 -15 -2.96873 | gap 1, opp_overlap 537014, overlap 537011 AGGGGGCATGAAAAA TCCCCTCTG-GCA CGA TGCGCAGAGGGGA TGATTTGGTAAGCCT TERM 607 537041 - 537014 - R 100 -15 -4.7254 | gap 1, opp_overlap 537011 537014 AGGGGGCATGAAAAA TCCCCTCTG-GCA CGA TGCGCAGAGGGGA TGATTTGGTAAGCCT bapA 537695 - 537213 - | autotransporter protein TERM 608 537623 - 537633 + g 76 -4.6 -4.75174 | TGTAGTGGATGCGTA CGGT ATC GCCG TTTTTCGCTTGCGTC TERM 609 537998 - 538010 + r 91 -9.1 -4.66537 | opp_overlap 537962 537995 537998 CGCTTTGAGGAATTA TCCCG GAA CGGGA TTTTCTATTCCGCAG Avi_0620 541524 - 538015 - | two component sensor kinase/response regulator hybrid TERM 610 538827 - 538837 + g 70 -2.4 -4.82901 | TGGTCGGCAGCACCA CCAG TTT CAGG TTTTTCTCCAGCGCC TERM 611 539207 - 539219 + g 72 -9.1 -3.93026 | GTGCGCTCGCCCACC CGCTG TTC CAGCG TTTCATTGGCCTGTT TERM 612 540355 - 540342 - G 74 -8.1 -4.14472 | GCAACACCCCGAAAA TCGCC AGGC GGCGA ATGAGAAGCACGGTC mscL 541815 - 542249 + | large conductance mechanosensitive channel protein TERM 613 542383 - 542341 - f 100 -17.8 -2.93435 | opp_overlap 542342 542350 GCAATGAGGTAGAGA TGGCCTCGGCCCTTGG TGCAAGGGTTT CCACGGGCCGAGGCCA TCACCAGAATCGATT TERM 614 542350 - 542364 + F 74 -10 -3.53012 | opp_overlap 542341, overlap 542342 TAGAGATGGCCTCGG CCCTTG GTG CAAGGG TTTCCACGGGCCGAG TERM 615 542977 - 542966 - g 71 -7.2 -4.2349 | CGGGCAGATCGAAAA GGCG ATTA CGCC CAAAACCAAGGCGCT TERM 616 543032 - 543004 - g 73 -12.4 -3.13403 | overlap 542987 543002 CGCTGTTCATCAACA CGCCGTCCAACC CGACC GGCTGGACGGCC AGCCTCGATGATCTG TERM 617 543540 - 543526 - g 74 -7 -4.38154 | opp_overlap 543536 ATATCGTTGATAAAA CCGGCG TGG CGCTGG CGCCCGGGTCGGCGT aspB 542472 - 543659 + | aspartate transaminase TERM 618 543773 - 543793 + F 85 -14 -2.79183 | TTCGGCATTTCGTCA CCCTCGGG CTTGT CCCGAGGG TCTGCTGCCGCTGAA TERM 619 544029 - 543972 - f 100 -17.9 -4.68919 | gap 1, overlap 543975 543980 AAAGACAAACGAAAA CAAGAGAAGCTAGAGTCTGTCTGGTTCA ACC TGAACCTGACAGACTCTAGCCAC-CGCG CAATGCCGCTCAAAG TERM 620 544026 - 543975 - f 100 -20.4 -4.40882 | gap 1, overlap 543972 543980 GACAAACGAAAACAA GAGAAGCTAGAGTCTGTCTGGTTCA ACC TGAACCTGACAGACTCTAGCCAC-C GCGCAATGCCGCTCA TERM 621 544022 - 543980 - f 100 -26.6 -3.97437 | overlap 543975 543972 ACGAAAACAAGAGAA GCTAGAGTCTGTCTGGTTCA ACC TGAACCTGACAGACTCTAGC CACCGCGCAATGCCG TERM 622 544189 - 544206 + F 95 -12.7 -4.2349 | CCAGTTTGCGCATCT TGCCCGC CTGC GCGGGCA TTTTGCGTCTGAGAA rfbF 544304 - 545074 + | glucose-1-phosphate cytidylyltransferase TERM 623 545341 - 545362 + G 73 -12.3 -3.05596 | gap 1 ATCGTCTTCCATCTG GCCGC-CCAG CCG CTGGTGCGGC TTGGCTACCGCGATC rfbG 545059 - 546159 + | CDP-glucose 4,6-dehydratase TERM 624 546346 - 546316 - g 100 -14.8 -3.91911 | gap 1, opp_overlap 546314 546312 546343 TGCAGGTCAACGAAA CCG-GCACGGTGC AAAAAG GCACCGTGCGCGG CCTGCATTTTCAGCA rfbC 546156 - 546719 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 625 547219 - 547177 - g 70 -3.8 -4.56597 | GGCGCTGGCGAAAAA GCTGGTGGCCGACGGCTGGG CCG CCGATCTGACCGCCGCCAAC AATGTGCTGGCGCAT Avi_0629 546716 - 547945 + | hypothetical protein Avi_0631 548070 - 549410 + | glycosyltransferase protein TERM 626 549459 - 549506 + T 100 -13.4 -4.30833 | overlap 549460 549503 AAGTTACCTACCGTA GTGCGTCACCGTCGTGGTGGCT TTTC AGCCGTCCTGACGGTGAGGCAA TTTATTGCTCGTTTC TERM 627 549460 - 549505 + T 100 -16.9 -3.17416 | overlap 549459 549503 AGTTACCTACCGTAG TGCGTCACCGTCGTGGTGGCT TTTC AGCCGTCCTGACGGTGAGGCA ATTTATTGCTCGTTT TERM 628 549570 - 549611 + T 100 -30.5 -3.31248 | opp_overlap 549570, overlap 549577 CAGCAAATATAGAAA GCGACAACGCCATGCGTTT TATA AAACGCATGGCGTTGTCGC TTATCAAAGATCTTC TERM 629 549611 - 549570 - T 100 -30.5 -4.29493 | opp_overlap 549570 549577 CAGCAAATATAGAAA GCGACAACGCCATGCGTTT TATA AAACGCATGGCGTTGTCGC TTATCAAAGATCTTC TERM 630 549577 - 549604 + T 100 -18.6 -3.45054 | opp_overlap 549570, overlap 549570 TATAGAAAGCGACAA CGCCATGCGTTT TATA AAACGCATGGCG TTGTCGCTTATCAAA Avi_0632 550445 - 549633 - | cephalosporin protein TERM 631 550106 - 550139 + g 70 -2.3 -4.83615 | gap 1, overlap 550112 550113 CGATGCCGAGCACCT TGCGGCG-GCTGGACT TGG GGTCCAGCATTTCGCC TTTTTCTACAGCCTC Avi_0633 550669 - 551541 + | epimerase protein TERM 632 551661 - 551609 - T 100 -25.2 -4.38472 | opp_overlap 551615, overlap 551615 GGCAAATGAAAACAA GAAAAACGAGAGTCTGTCTGGTTC AATCA GAACCTGACAGACTCTCGTTTATC GCAACGCATTGAAGA TERM 633 551655 - 551615 - T 100 -22.8 -5.4593 | opp_overlap 551615, overlap 551609 TGAAAACAAGAAAAA CGAGAGTCTGTCTGGTTC AATCA GAACCTGACAGACTCTCG TTTATCGCAACGCAT TERM 634 551615 - 551655 + T 100 -22.8 -3.85817 | opp_overlap 551615 551609 TGAAAACAAGAAAAA CGAGAGTCTGTCTGGTTC AATCA GAACCTGACAGACTCTCG TTTATCGCAACGCAT TERM 635 552381 - 552365 - T 70 -4.3 -4.46112 | opp_overlap 552365, overlap 552361 TTCCAGTGAAAGAAA GCCTCGA GCA TCGGAGC CTTCTCAAATTCGGT TERM 636 552483 - 552498 + T 72 -4.7 -4.64861 | CACTCCATCCCAACG CATCC ACATGG GGATG TTTATTTTCCAGAGA Avi_0636 553458 - 553249 - | hypothetical protein Avi_0638 554135 - 553515 - | septum formation associated protein TERM 637 553995 - 554010 + g 79 -6.8 -4.57341 | overlap 553992 553983 CAAGCGGCGCGCCAG CGAGCG TGGC TGCTCG TTTTTCAAGGGGCTT infA 554370 - 554152 - | translation initiation factor IF-1 TERM 638 554243 - 554276 + g 75 -8.9 -3.99719 | overlap 554232 554246 AGCACGCGGATGCGG TTCTTGCGCATACGG CCAG CCGTATGGGCGATAA TTTCATGTTCGTTTT Avi_0641 554995 - 554492 - | hypothetical protein Avi_0642 555479 - 555006 - | hypothetical protein hisD 556781 - 555483 - | histidinol dehydrogenase TERM 639 555873 - 555892 + g 88 -13.6 -3.65351 | opp_overlap 555872 555871 CAGCGCGCCAAAATC CTGCCAGC TGGC GCTGGCAG TTTCGCTGCGGCTCA TERM 640 556437 - 556451 + g 71 -11.4 -3.20858 | opp_overlap 556404 GCGGGAGCCGAGGCC GACGCC GAT GGCGTC TTCGTAGATATCGTC TERM 641 556819 - 556838 + r 83 -12.8 -3.35344 | overlap 556813 CCCGCCTATTCCTCA GGCTCCGG GATG CCGGGGCC TTGATGTGGTTTCCC Avi_0644 557271 - 556816 - | hypothetical protein TERM 642 557104 - 557118 + g 70 -4.2 -4.56597 | overlap 557089 557088 GCGGCGAAAAATTCC GCCG CCTTTCC CGGC TTTTTCCCAGACGAA murA 558663 - 557371 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Avi_0646 559046 - 558798 - | hypothetical protein TERM 643 558883 - 558904 + g 91 -12.9 -4.08692 | overlap 558869 TCATCGGCGCCGCCA GCCCGGCGC GCCC GCGCCTGGC TTTTGCGGCGCATTA TERM 644 560223 - 560191 - g 75 -5.6 -4.69326 | gap 1 AGACCCAAGATAAAA TCGGTAGCCT-TAGC CAAG GCAAGAGCCTACCGA AAAACGCATACCGCG TERM 645 560238 - 560228 - g 72 -4.6 -4.66609 | GAGCCTACCGAAAAA CGCA TAC CGCG ACCACTGCCTGGGTT Avi_0647 559710 - 560363 + | hypothetical protein Avi_0648 561521 - 560424 - | transposase protein Avi_9910 562024 - 561680 - | hypothetical protein TERM 646 563041 - 563023 - g 74 -7.5 -4.386 | CAAGCTGGGATAAAA TCGTTCA GATCG TGAACGA GGATGGCGGCAACAG TERM 647 563770 - 563747 - g 76 -12.4 -3.41839 | overlap 563738 563740 CACAGATAGCTACAA GCTAGCGCGC CAGT GTGCGCTAGC GACCCCGAATTTGAG Avi_0649 562782 - 563984 + | hypothetical protein TERM 648 564783 - 564736 - g 74 -7.6 -4.18018 | CCGCCCGATGGAAAA GCGCGCAACGTCATCCTCGAGC AGAT ACTCGAGGCCAAGGTCGCAAGC CTGACGGCGCAGCCG Avi_0650 563971 - 566100 + | ATPase protein TERM 649 566401 - 566419 + T 86 -5.9 -5.14563 | overlap 566403 CGCTGAAGCCGATAT CGCCGAC TTCCT GTCGGAG TTTTTTGCTCGCCAG TERM 650 567239 - 567255 + T 78 -10.9 -3.5394 | overlap 567227 TACCAGGCGCTTACA GCGGAAA TGA TTTCCGC TTTGCGCCCCCGTTT Avi_0652 567950 - 567360 - | Transcriptional regulator protein Avi_0654 568071 - 568496 + | hypothetical protein TERM 651 568531 - 568517 - f 75 -5.6 -4.7254 | overlap 568519 568526 ACGTGCTAGCAAAAA CGCGGA AAA TCCGGG GCCGGACGCGGAATC TERM 652 568537 - 568526 - f 70 -5.8 -4.20883 | overlap 568519 568517 CAAAAACGCGGAAAA TCCG GGGC CGGA CGCGGAATCTGCCCG Avi_0656 568575 - 568970 + | hypothetical protein Avi_0658 569268 - 569900 + | phage integrase protein TERM 653 569903 - 569935 + F 100 -21.3 -3.64703 | GACCGAGATCTGATG GGGAGCGGCCCTACA CGT TGTGGGGCCGCGCCC TTTCGCTCGGGGAGC TERM 654 570136 - 570111 - f 100 -4.7 -5.76949 | CATTTTCAAAAAAAA TGGCCAATCGC GCGA ACGATTTACCA CCGATCGCCGCCGTT TERM 655 570222 - 570270 + F 100 -21.3 -2.73123 | opp_overlap 570250, overlap 570224 ATCGGCCGCTATTGA CACCGTAGGACGTTTGCCCTA ATAATTA TAGGTCAAATGTCCTACGGTG TGGTTCACGGCTTTT TERM 656 570224 - 570268 + F 100 -18.1 -2.90571 | opp_overlap 570250, overlap 570222 CGGCCGCTATTGACA CCGTAGGACGTTTGCCCTA ATAATTA TAGGTCAAATGTCCTACGG TGTGGTTCACGGCTT Avi_0659 570317 - 570907 + | transcriptional regulator TetR family Avi_0660 570927 - 571211 + | hypothetical protein tag 571215 - 571958 + | 3-methyladenine-DNA glycosylase Avi_0664 573107 - 572391 - | metal dependent hydrolase Avi_0666 573578 - 573252 - | hypothetical protein Avi_0667 574129 - 573584 - | hypothetical protein gcvA 574298 - 575197 + | transcriptional regulator LysR family Avi_0672 576663 - 576187 - | hypothetical protein TERM 657 576308 - 576322 + g 76 -2.8 -5.00616 | opp_overlap 576308 AGGCTGTCGATCAAA TCTTCG CGG CAAAGA TTTTTTGGACCGGCA Avi_0673 576893 - 577795 + | hypothetical protein Avi_0674 577838 - 578497 + | hypothetical protein TERM 658 578746 - 578756 + F 87 -4.6 -5.1925 | AGGACGCCGTGTATG GCCG ATT TGGC TTTTTTAACTTCTCC TERM 659 579769 - 579757 - g 76 -3.4 -4.87291 | TACGCCAACCAAAAA TCCA TCTTG TGGA TACTGGGATCGTCGC Avi_0676 578895 - 580172 + | ATPase, AAA+ superfamily protein Avi_0677 581183 - 580497 - | hypothetical protein TERM 660 581316 - 581300 - R 90 -9.5 -4.47217 | AATGAGCAAGGAAAA TCACAAC AGG GTTGTGA AATGAATGCTGTTCA Avi_0679 581999 - 581652 - | hypothetical protein Avi_0680 583660 - 581996 - | agrobacteirum virulence protein VirD4 TERM 661 584492 - 584479 - g 74 -8.1 -4.12188 | overlap 584488 TGAGCATTCGGAAAA GCGCA AGGA TGCGC GTCTAGCGCGGGAAT TERM 662 586804 - 586787 - g 72 -4.9 -4.56597 | gap 1, overlap 586788 CCGCTGGGTGAAAAA GGTTTGGA GAT TCCAA-CC GAGAAGGTCGCGCCA traA 584243 - 587560 + | Ti-type conjugative transfer relaxase TraA istA 587844 - 589361 + | IS21 family transposase istB 589351 - 590145 + | IS21 family transposase TERM 663 590486 - 590435 - f 76 -8.1 -4.25104 | gap 2, opp_overlap 590421 590434, overlap 590436 GCGCGGCGAGCAAAA TCCCGCG-GTTCTGCT-CGGATG GATACACT CATCCGCAACGGAACGCGCGGGC GCTTCTACAATGTCG TERM 664 590485 - 590436 - f 77 -11.6 -3.14848 | gap 2, opp_overlap 590421 590434, overlap 590435 CGCGGCGAGCAAAAT CCCGCG-GTTCTGCT-CGGATG GATACACT CATCCGCAACGGAACGCGCGGG CGCTTCTACAATGTC Avi_0686 590874 - 591326 + | transposase Avi_0687 591323 - 591676 + | transposase TERM 665 592845 - 592824 - g 77 -2.1 -5.03314 | overlap 592825 CCGATCTCGAAAAAA GTGCGCGCG ACAG CAAGCGCAA TGGCAGGCCGATCTC Avi_0688 591722 - 593380 + | transposase Avi_0689 593594 - 593361 - | hypothetical protein Avi_0692 593930 - 594283 + | transposase Avi_0693 594353 - 595966 + | transposase TERM 666 595969 - 595947 - f 72 -7.7 -3.90048 | overlap 595948 GGGCCTTCAAAAAGA TCGTCAAGC CCGCC GCTTGACGG GTTCAGCTCCACTGG TERM 667 595968 - 595948 - f 71 -11.2 -2.93708 | overlap 595947 GGCCTTCAAAAAGAT CGTCAAGC CCGCC GCTTGACG GGTTCAGCTCCACTG Avi_0695 595963 - 596295 + | hypothetical protein tnpA 596548 - 596751 + | ISL3 family transposase Avi_0697 598874 - 596793 - | subtilisin-like serine protease TERM 668 596970 - 596957 - G 70 -3.8 -4.57073 | overlap 596961 CAGCGTCGCTAAAAA GCAC GCGAAT GTGC CGATCGCCACCAAGA TERM 669 598856 - 598835 - G 76 -2.9 -4.92757 | overlap 598837 CCACGAATAACAAAA TCCAGGTGA GAGG TCGCCCGAA AGCTATTAATTTCGA Avi_9911 599650 - 598862 - | peptidase S1 (chymotrypsin) family protein TERM 670 598953 - 598938 - G 89 -6 -5.03145 | overlap 598939 CAACTTTGGAAAAAA GCCCGG CCGT CCGGGG AAAACGTGGCCGATA Avi_0698 600570 - 600364 - | transcriptional regulator protein TERM 671 600635 - 600647 + H 76 -9.1 -3.77464 | overlap 600626 600644 AGGAGGCGCTTCGGA CCACG ATG CGTGG TTTGATCACTGGTCT TERM 672 600716 - 600737 + H 80 -11.6 -3.36991 | overlap 600714 GCGGAGGGCCAGAGC GATCCCGC CCTTCA GCGGGATC TATTTGAAGATCATA TERM 673 600835 - 600851 + H 77 -6.5 -4.67755 | CGCGGTCGATCCGGC GCAGCTC ATA GAGATGC TTTTTGGGTCGCTGT TERM 674 600914 - 600931 + H 86 -6.3 -5.0916 | gap 1, overlap 600914 600915 GAACAATATGGGGAC GC-GCATC ATA GATGCGGC TTTTTGTCTTCAGGA Avi_0700 601327 - 601914 + | hypothetical protein Avi_0701 602606 - 602223 - | nucleic acid-binding protein Avi_0702 602803 - 602603 - | hypothetical protein Avi_0703 607426 - 604211 - | phosphohydrolase protein TERM 675 606918 - 606907 - G 78 -3 -5.17353 | AGACCGAGCAAAAAA TGTT CGCG AACA CGGTGCTGCTCTTCG parA 607855 - 608529 + | chromosome partitioning protein TERM 676 609460 - 609475 + F 76 -9 -3.79113 | overlap 609465 GCTGGCGGGACATGC CCGAAG ACCG CTTCGG TTCTTATCAAGCAGT TERM 677 609670 - 609637 - f 88 -8.7 -4.59773 | opp_overlap 609668 GCGGACGCCGAAAAA GGGGGGACCGCAAGC CCAG GCTCTCGGTCGCTCC AGAGGTGGATTTGGC TERM 678 609994 - 609978 - f 73 -11.5 -2.62246 | overlap 609977 CCAAGCTCAAGCAAT GGCGGCG TAT CGCCACC CGATATGACAAACTC TERM 679 610215 - 610234 + F 73 -3.6 -4.85267 | gap 1, opp_overlap 610207, overlap 610233 GCAAAATTGCAGATT TGC-AGTTG GAC CGACTCGCA TTTTTAATGGTTTAT TERM 680 611444 - 611462 + G 100 -11.7 -4.72986 | ATGCTGGCGAACTTG CCGCACC GTGAA GGTGCGG TTTTTCGTCGGCATG Avi_0710 610760 - 611791 + | Integrase protein Avi_0711 613340 - 612093 - | Capsule polysaccharide export protein TERM 681 613207 - 613190 - G 83 -8.3 -4.63928 | AGATGACGGCAAAAA CCCGGTC GCGT GTCCGGG GCGCTAGACCTGCAA Avi_0712 614051 - 613398 - | cell surface polysaccharide export ABC-2 transporter ATP-binding protein TERM 682 614012 - 613998 - G 71 -7 -4.19177 | opp_overlap 613996 613998 613999, overlap 613999 ATTGCGCAAGATAAA CCGGCG ATG CGCCGC TGTCTTGTAATATTT Avi_0713 615301 - 614054 - | capsule polysaccharide export inner-membrane protein TERM 683 614216 - 614196 - G 72 -8.4 -3.81948 | opp_overlap 614194 614200, overlap 614200 GAATCCGAGAAAATA GAAACGAA TGTGG TTCGTTTC AGTGCTGTGGATTTT Avi_0716 617987 - 619612 + | ABC transporter nucleotide binding/ATPase protein Avi_0717 620517 - 619621 - | transcriptional regulator protein TERM 684 620624 - 620612 - H 71 -9.1 -3.54307 | opp_overlap 620605, overlap 620601 AATACCTGCCGCAAA GGGCA GGC TGCCC ATCCGGTTTTCCGTG TERM 685 620644 - 620659 + H 74 -6 -4.57569 | overlap 620645 GGTTTTCCGTGTATA CGCCGC TTTA GCGGCC TTTTTACCCGGCTAC TERM 686 621528 - 621510 - g 74 -7.4 -4.29106 | opp_overlap 621511, overlap 621511 GGTGAGACCAAGAAA TGGATGGT TGC ACCATCCT TGAGTTGGAGTGGCG TERM 687 621511 - 621527 + G 71 -10.9 -3.18274 | opp_overlap 621511 621510 GTGAGACCAAGAAAT GGATGGT TGC ACCATCC TTGAGTTGGAGTGGC fhuA 620784 - 622958 + | hydroxamate-type ferrisiderophore receptor Avi_0719 623089 - 623967 + | hypothetical protein TERM 688 624036 - 624079 + T 100 -17.5 -3.66883 | opp_overlap 624033, overlap 624013 624041 624043 GGATGAGATAATGCC TGGCTCAGTTCCGTGCGCC ATATAA GGCGCACGGAACTGTGTAA TTTCGAATATCTTAC TERM 689 624041 - 624074 + T 100 -22.6 -3.01765 | opp_overlap 624033, overlap 624013 624036 624043 AGATAATGCCTGGCT CAGTTCCGTGCGCC ATATAA GGCGCACGGAACTG TGTAATTTCGAATAT TERM 690 624043 - 624072 + T 100 -19.4 -3.06037 | opp_overlap 624033, overlap 624041 624036 ATAATGCCTGGCTCA GTTCCGTGCGCC ATATAA GGCGCACGGAAC TGTGTAATTTCGAAT TERM 691 624168 - 624138 - T 100 -17 -3.64912 | opp_overlap 624133 624140 TATTGATATATAGAA TACCCAGGGTCATC AGC GATGACTCTGGGTA TAATCCCTTACATGA TERM 692 624140 - 624166 + T 100 -17.4 -2.83112 | opp_overlap 624138, overlap 624133 TTGATATATAGAATA CCCAGGGTCATC AGC GATGACTCTGGG TATAATCCCTTACAT Avi_0720 624619 - 624176 - | hypothetical protein flhB 625710 - 624625 - | flagellar biosynthetic protein TERM 693 625645 - 625655 + g 85 -2.4 -5.60993 | ATTGCCTTGTTCTGC CGCG TCC CGCA TTTTTTTCTCGGACG TERM 694 625878 - 625827 - R 72 -5.9 -4.36914 | gap 1, opp_overlap 625830 625845, overlap 625835 TCGTGTTTTATAAAA CGCACAAAGGCCGGAGCAGAAAGC TTAAC GCTCTCTATTCCGGCCTTCA-ACT CTTTCAGTCCATTCG TERM 695 625871 - 625835 - R 100 -15.2 -4.07786 | opp_overlap 625830 625845, overlap 625827 TATAAAACGCACAAA GGCCGGAGCAGAAAGC TTAAC GCTCTCTATTCCGGCC TTCAACTCTTTCAGT fliG 627025 - 625982 - | flagellar motor switch protein FliG fliN 627717 - 627055 - | flagellar motor switch protein FliN TERM 696 627546 - 627513 - G 84 -13.1 -3.71649 | gap 1, overlap 627506 627514 TTTCGAAATCGGAAA GGCCGCCAGCGGCATC GCC GAAGTCGCTGGCG-CC AGCGGCTGCGAAATC TERM 697 627552 - 627514 - G 80 -14.4 -2.82668 | overlap 627506 627513 TTCGAAATCGGAAAG GCCGCCAGCGGCATCGCC GAA GTCGCTGGCGCCAGCGGC TGCGAAATCCGTTCC TERM 698 627799 - 627778 - R 72 -7.3 -4.21462 | overlap 627779 ATGCAGCAGGGAAAA TCGTCATCT CATG AGATGACGT AAAAGCTCACTATCT TERM 699 627798 - 627779 - R 72 -10.8 -3.12395 | overlap 627778 TGCAGCAGGGAAAAT CGTCATCT CATG AGATGACG TAAAAGCTCACTATC fliM 628740 - 627781 - | flagellar motor switch protein motA 629612 - 628737 - | chemotaxis transmembrane protein TERM 700 630221 - 630251 + G 71 -7.4 -4.14243 | overlap 630235 TCAGCATCGATACGC CGGCCGGCCCGG CCCTGAC CCGTGACGGTCG TTTTACCATGACATC flgF 629938 - 630672 + | flagellar basal body rod protein fliI 630695 - 632089 + | flagellum-specific ATP synthase Avi_0732 632157 - 632642 + | hypothetical protein TERM 701 632727 - 632742 + F 100 -11.8 -4.74103 | opp_overlap 632727 AGTGTGTTTTTCAAA GCCGCC TATG GGCGGC TTTTTGCATTGGCGG TERM 702 632742 - 632727 - f 82 -11.8 -3.53091 | opp_overlap 632727 AGTGTGTTTTTCAAA GCCGCC TATG GGCGGC TTTTTGCATTGGCGG flgB 632932 - 633324 + | flagellar basal-body rod protein FlgB flgC 633328 - 633765 + | flagellar basal-body rod protein fliE 633762 - 634136 + | flagellar hook-basal body complex protein flgG 634155 - 634946 + | flagellar basal-body rod protein flgA 634964 - 635443 + | flagellar protein FLGA precursor flgI 635440 - 636555 + | flagellar P-ring protein precursor TERM 703 637073 - 637056 - g 72 -4.8 -4.60041 | gap 1 ATGGACCCCGAAAAA GCC-GCG CTCGT CGCTGGC ATCATGTCCAATGCC Avi_0743 636552 - 637121 + | hypothetical protein flgH 637118 - 637831 + | flagellar L-ring protein precursor TERM 704 637857 - 637883 + F 70 -10.9 -2.82933 | opp_overlap 637847 637843 637861, overlap 637849 637861 AGATACTGCCTTTTA CCAACGGCC TGTTTCTGT GGCCGTTGG TATGATGCGTTCCGG fliL 637997 - 638515 + | flagellar protein fliP 638512 - 639249 + | flagellar biosynthetic protein TERM 705 639312 - 639327 + F 84 -7.5 -4.70626 | CGTGTTCGCGCCTTG CGCCC CATCCT GGGCG TTTTTGGCGTTGTTA flaA 639514 - 640476 + | flagella associated protein TERM 706 640505 - 640525 + F 100 -11.8 -5.1971 | opp_overlap 640503 640499 640505 CATACGAAACCAAGA GGCCGGGC ATTCA GTCCGGCC TTTTTAATTTTTCAT TERM 707 640603 - 640616 + F 85 -6.7 -4.73448 | opp_overlap 640602 AATTAATCACGTAAT TCTCC ATTA GGAGA TTTTTAACTGTGTCT flaA 640763 - 641725 + | flagella associated protein TERM 708 641756 - 641778 + F 100 -11.3 -5.32396 | opp_overlap 641753 GCATCGAAACATCTA TAGCCGGGT GATGA GCCCGGCTA TTTTGTTTTTCGTAT flaA 642114 - 643076 + | flagella associated protein TERM 709 643107 - 643128 + F 100 -15.9 -5.86465 | opp_overlap 643104 643103 643107 GAATCACCAAATGCA TAGCCGGGC GAAA GCCCGGCTA TTTTTTTATCTTGTT TERM 710 643128 - 643107 - f 95 -15.9 -2.69489 | opp_overlap 643107, overlap 643104 643103 GAATCACCAAATGCA TAGCCGGGC GAAA GCCCGGCTA TTTTTTTATCTTGTT TERM 711 643832 - 643810 - g 70 -4.8 -4.48987 | opp_overlap 643822 643828, overlap 643812 643822 CGTGGACAAGGAAAA GATCAACAAG GAG CTGGTTGAGC TGAAGAACCAGCTGA flaA 643490 - 644452 + | flagella associated protein TERM 712 644520 - 644501 - f 100 -8.6 -5.79588 | opp_overlap 644504, overlap 644514 TGAAAATGAAAAAAA CAAGCCAC AGCA ATGGCTTG TAGGGTTCACAAAGC TERM 713 644607 - 644626 + F 100 -15 -5.1675 | opp_overlap 644607 ACGATGTTTATCAAA GCCGCAGC ACCC GCTGCGGC TTTTTTCATGCGTGC TERM 714 644626 - 644607 - f 100 -15 -3.73953 | opp_overlap 644607 ACGATGTTTATCAAA GCCGCAGC ACCC GCTGCGGC TTTTTTCATGCGTGC TERM 715 645161 - 645140 - g 75 -9.5 -3.87149 | gap 1 TCTATCAAATCCAAA CTGGTT-GCG GCG CGCGAACCAG GCGTGGACAAGGACA TERM 716 645215 - 645196 - g 71 -10 -3.59233 | opp_overlap 645194 CAACCAGGAAATCAA CGAGCTGA AGAA CCAGCTCG CCTCCATTGCCGAAT TERM 717 645680 - 645658 - g 72 -4.8 -4.57073 | opp_overlap 645669 TACGTTCGTTAAAAA CCTCAGCGAT ACG ATCGACAAGG GCGTCGGACGTCTGG flaB 644858 - 645820 + | flaB TERM 718 645890 - 645930 + F 81 -9.1 -4.08767 | gap 1, overlap 645893 645894 ATCGGCATCTGGTGG AATCGTTGGACCGCGCAA CTGCCC TGGCGCGGTCCAAC-ATA TTTTCAGGGGATGCA TERM 719 645893 - 645928 + F 93 -13.3 -3.6422 | overlap 645890 645894 GGCATCTGGTGGAAT CGTTGGACCGCGCAA CTGCCC TGGCGCGGTCCAACA TATTTTCAGGGGATG TERM 720 645894 - 645927 + F 100 -16.8 -2.78211 | overlap 645893 645890 GCATCTGGTGGAATC GTTGGACCGCGCAA CTGCCC TGGCGCGGTCCAAC ATATTTTCAGGGGAT Avi_0755 646296 - 646946 + | GTPase protein TERM 721 648186 - 648166 - g 77 -7.6 -4.36914 | gap 1, opp_overlap 648166 648165 CGGGCTCGCACAAAA CCGGATCAC CCAG GTG-TCCGG CTTTGCCGATCGCCG motB 646943 - 648277 + | flagellar motor protein Avi_0759 648282 - 649733 + | Chemotaxis protein TERM 722 650580 - 650564 - gf 72 -4.3 -4.5954 | GCAGAGGATACAAAA GACACTG CTG CAGAGCC AAAGGCAGCGACGGG Avi_0760 649730 - 651589 + | chemotaxis motility protein TERM 723 651658 - 651675 + GF 75 -11.3 -3.10344 | opp_overlap 651657 651654 CTGCGGCCAAATACG GGATCCC TGAA GGGATCC TCTATTCGGTCGGCC Avi_0761 651555 - 652103 + | hypothetical protein TERM 724 652514 - 652538 + G 84 -12.9 -3.76968 | opp_overlap 652513 652512 652510 ACGTGAAGGAATACC TTCGACCGGGT TTG ACCCGATCGAA TTTGGTGAATGGGTT TERM 725 652826 - 652836 + G 74 -8.2 -4.1822 | opp_overlap 652822 652816 CTATACCGAAATCGG CGCG ATC CGCG TTTATTCGGATGGCC TERM 726 653079 - 653051 - g 81 -11.7 -3.64283 | opp_overlap 653050 653049 653073 GAAACTGCGCAAGAA GCTTGGTGTCGAC CCG GTCGATTCCAAGC GGTTCCTTGGATATT Avi_0763 652440 - 653111 + | transcriptional regulator TERM 727 653115 - 653135 + F 100 -16.9 -3.30159 | opp_overlap 653115 GATTGGAAATAACAA TCTGGCGGC CAC GCCGCCAGA TTCTCAGGGCCTTGC TERM 728 653135 - 653115 - f 100 -16.9 -4.09628 | opp_overlap 653115 GATTGGAAATAACAA TCTGGCGGC CAC GCCGCCAGA TTCTCAGGGCCTTGC TERM 729 653160 - 653171 + F 71 -2.2 -5.00884 | CCTTGCAGCCAAATG TGCT CTTA AGCG TTTTTTCAAACAGCT flgE 653242 - 654498 + | flagellar hook protein flgK 654523 - 655977 + | flagellar-associated protein flgL 655981 - 657048 + | flagellar hook-associated protein flaF 657083 - 657430 + | FLAF protein flbT 657427 - 657876 + | FLBT protein flgD 657867 - 658322 + | hook formation protein TERM 730 658384 - 658423 + F 100 -13.9 -3.98083 | opp_overlap 658390, overlap 658390 AAGGCTTTAACGACT GTGAAATTCCTCAAATC GATTGG GATTTGAGGAATTTTGC TTTATCAATTGAGTC TERM 731 658390 - 658417 + F 100 -11.5 -4.62475 | opp_overlap 658390, overlap 658384 TTAACGACTGTGAAA TTCCTCAAATC GATTGG GATTTGAGGAA TTTTGCTTTATCAAT TERM 732 658417 - 658390 - f 85 -11.5 -3.59315 | opp_overlap 658390 658384 TTAACGACTGTGAAA TTCCTCAAATC GATTGG GATTTGAGGAA TTTTGCTTTATCAAT fliQ 658474 - 658740 + | flagellar biosynthetic protein TERM 733 659176 - 659196 + G 83 -13.3 -3.54919 | overlap 659189 CAGGGTCACGATGCG GCCGGCAGT GTC ATTGCCGGC TTTGCCAACCTGGTT TERM 734 659421 - 659436 + G 78 -6.1 -4.57073 | opp_overlap 659420 CCGGCGCAAGGAACT GGAGC AGGAAA GCTCC TTTTTCGGCGCGATG flhA 658864 - 660954 + | flagellar biosynthesis protein fliR 660951 - 661703 + | flagellar biosynthetic protein FLIR Avi_0774 661767 - 662180 + | hypothetical protein Avi_0776 662180 - 662812 + | hypothetical protein Avi_0777 662987 - 663352 + | hypothetical protein Avi_0778 663352 - 663882 + | hypothetical protein TERM 735 663917 - 663963 + F 73 -11.9 -2.71712 | overlap 663917 663919 GGCGGTTGGTACTCC GGTTTCGAATATTTCAAGCGT TTGAT GCATTTGAAATATTCGAAATC CTTTGAAGGGCGAGG TERM 736 663917 - 663964 + F 71 -9.5 -3.53012 | gap 1, overlap 663917 663919 GGCGGTTGGTACTCC GG-TTTCGAATATTTCAAGCGT TTGAT GCATTTGAAATATTCGAAATCC TTTGAAGGGCGAGGA TERM 737 663919 - 663961 + F 71 -10.9 -2.90496 | overlap 663917 663917 CGGTTGGTACTCCGG TTTCGAATATTTCAAGCGT TTGAT GCATTTGAAATATTCGAAA TCCTTTGAAGGGCGA TERM 738 663968 - 664003 + F 72 -9.8 -3.29144 | gap 1, overlap 663971 TATTCGAAATCCTTT GAAGG-GCGAGGATGCG GTT CACATCTTTGCGCCTTC TTATGAGAGGCATGG TERM 739 664825 - 664815 - g 73 -3.2 -4.72272 | overlap 664817 CCCTTGCAGGAAAAA TGGA TTG CCCA GCATATCAAGCCGCA TERM 740 664990 - 665001 + G 84 -3.6 -5.32599 | overlap 664962 GGCGCCGCTATCTGA TCGG TATT CCGG TTTTTCTCTTTTATG tagA 664230 - 665069 + | teichoic acid biosynthesis protein folD 665331 - 666122 + | methylenetetrahydrofolate dehydrogenase /cyclohydrolase aglR 667152 - 666124 - | transcriptional regulator repressor TERM 741 666988 - 666955 - G 73 -13.1 -2.7263 | overlap 666954 666977 ATGATCCGGGGAAAT CGGCATGACCAGTCC TAGC GAACCGGCCTTGCCG GTTGCCAGCCGCAGG TERM 742 667287 - 667309 + H 76 -4 -5.00884 | overlap 667290 667307 TCGCTGCTCCATTTT GAACGGGACA GAA TGGCTCGGTC TTTTTTGAAAAGGCT aglE 667443 - 668801 + | ABC transporter substrate binding protein (alpha-glucoside) TERM 743 668849 - 668812 - f 100 -17.1 -3.10876 | overlap 668804 668802 AATAACACCGCAATA GCCAGGTATCGCAGC CTCAATTT GCTGCGATGCCTGGC ATGCATATCGATAAG aglF 668865 - 669896 + | ABC transporter membrane spanning protein TERM 744 670956 - 670980 + G 70 -2.7 -4.77036 | GGCATCCGCCTTCAT CACCATTATCG TGC CGCTTTTGGTG TTTTTCGTGCTGCAA aglG 669898 - 671043 + | ABC transporter membrane spanning protein aglA 671120 - 672772 + | alpha-glucosidase TERM 745 672828 - 672790 - f 95 -11.9 -4.39696 | gap 2, overlap 672791 672792 GCTGAAACTAACAAA CGGTTATCTGTCCGGCTCA TGG CGAGCCGGACAGAT--CCA AAAACGAGGAGGGGG TERM 746 672827 - 672791 - f 85 -13.2 -3.23094 | gap 2, overlap 672790 672792 CTGAAACTAACAAAC GGTTATCTGTCCGGCTCA TGG CGAGCCGGACAGAT--CC AAAAACGAGGAGGGG TERM 747 672827 - 672792 - f 80 -13.4 -2.53134 | gap 1, overlap 672791 672790 TGAAACTAACAAACG GTTATCTGTCCGGCTCA TGG CGAGCCGGACAGATC-C AAAAACGAGGAGGGG TERM 748 673212 - 673171 - g 100 -12.3 -4.64861 | gap 1, opp_overlap 673182 GCCGGTGAAAACAAA CAGGAAATCGAGCGGCGG GTGCGCG CCGCCGC-CGCTATCCTG CAATTGGAGCCCTAT aglK 672850 - 673938 + | ABC transporter TERM 749 673967 - 674015 + F 70 -3.6 -4.7033 | opp_overlap 673977, overlap 673976 CCCATGCATTAACTA TGGTAAAAAAGGCAGGCTCGCC AAGGG GGCGGGCAGGCCGGTTTATCCA TTTTCTGTTAAGTTC TERM 750 674005 - 673977 - f 90 -7.2 -5.07053 | opp_overlap 673976 673967 AACTATGGTAAAAAA GGCAGGCTCGCC AAGGG GGCGGGCAGGCC GGTTTATCCATTTTC TERM 751 674224 - 674200 - g 75 -4.2 -4.74453 | gap 1 GAATATACCGAAAAA GGCATGA-GCC ATAT GGCGTCGCGCC GATGCGACATCATCC Avi_0790 674077 - 674484 + | hypothetical protein TERM 752 674563 - 674583 + F 100 -14 -4.4261 | opp_overlap 674576, overlap 674576 TATCAGACGCATTGG CGGGGAGC ATCAA GCTCCCCG TTTTGCTGTTCGCCG TERM 753 674619 - 674636 + F 71 -2.6 -4.90381 | overlap 674618 CTGCTTTGGGCCGCG GGATGG TGTATC CCTTCC TTTTCTTATCTTGCA TERM 754 674852 - 674866 + F 74 -8.6 -3.90856 | opp_overlap 674852 674851 GCGATGATAAAAACC GGGTTT TGT AAACCC TTTGGTTACCAAGTT TERM 755 675056 - 675072 + F 73 -9.4 -3.65827 | opp_overlap 675039 675038 GCGGCGTTGAGCCGC CAGCCG CTGAC CGGCTG TTTGGGTACGAGTTG Avi_0791 675093 - 676478 + | hypothetical protein TERM 756 676529 - 676500 - T 81 -13.5 -2.63301 | opp_overlap 676503, overlap 676489 GATATCTCGATATGA TCACGCCGCGCTG GCAA CAGCGCGGCGTTT TCGTGTTTAAACCAG TERM 757 676503 - 676526 + T 100 -19.6 -4.49756 | opp_overlap 676500 676489 ATCTCGATATGATCA CGCCGCGCTG GCAA CAGCGCGGCG TTTTCGTGTTTAAAC Avi_0792 677933 - 676536 - | Na+/citrate symporter protein mcpA 680409 - 678187 - | methyl-accepting chemotaxis protein TERM 758 678615 - 678589 - G 71 -10 -3.62096 | opp_overlap 678588, overlap 678590 GGCCACGACCGCAAA TCCCTTGCCGGC CTC GCCAGCACGGGC AGCTTCTACCCCGGC TERM 759 678614 - 678590 - G 76 -13.5 -2.77043 | opp_overlap 678588, overlap 678589 GCCACGACCGCAAAT CCCTTGCCGGC CTC GCCAGCACGGG CAGCTTCTACCCCGG TERM 760 679558 - 679572 + g 76 -3.5 -5.00616 | ATCGATGCGAGGGCC GAGCG TGTCC TGCTC TTTTTTCAGAACCAG TERM 761 680484 - 680474 - R 73 -4 -4.84642 | TGTAAATTAATAAAA TCTA ATG TAGA GAAAAATGAATTAAA TERM 762 680768 - 680718 - R 86 -6.7 -4.92777 | gap 1, opp_overlap 680718 680716 680715 AAGATTAACGAAAAA TTGTAATTTTTATATTCAATTTTC GATT GAAAATTGAATATG-AAATTAAAA TGATTTTGGTAATGC TERM 763 681213 - 681232 + r 70 -5.8 -4.22407 | CAGACTCTAACGTCT CTTGTTTT CGGA AAAACAGG TTTCTACTTTTCCTA edd 683074 - 681257 - | phosphogluconate dehydratase TERM 764 683102 - 683146 + r 100 -16.4 -3.05268 | gap 1 TCCTGAAAAGGGCAG GGGCG-GCGACCTTGGCGCTC GCTA GAGCGCTGCGGTCGCCCGCGC TATTGGGCCTCGTTC pgl 683937 - 683218 - | 6-phosphogluconolactonase zwf 685399 - 683930 - | glucose-6-phosphate 1-dehydrogenase TERM 765 684531 - 684546 + g 90 -6.8 -5.055 | opp_overlap 684519 GCACCGGCCTTGTAC TGGCCG CGAA CGGTCA TTTTTTCAACATTGG TERM 766 684954 - 684973 + g 72 -8.6 -3.79519 | gap 1 CGGCCAATCGGCTTT TCCACCACG ATG CG-GGTGGA TTTGGTGATCAGCTT TERM 767 685494 - 685483 - R 74 -2.2 -5.10497 | overlap 685474 685487 AATCGATTTAAAAAA GCCA GTCC TAGC GTTTCTAAAACGCCC ordL 686828 - 685545 - | oxidoreductase TERM 768 686815 - 686838 + g 75 -5.3 -4.68593 | gap 1, opp_overlap 686802, overlap 686802 686815 AGGCCGGGTGCAATC GG-GCTTTGC CACAT GCGAAGCTCC TTTTTGAATGCTGCA glnA 688335 - 686899 - | glutamine synthetase TERM 769 689304 - 689275 - g 71 -7.7 -4.08767 | gap 1, opp_overlap 689294 TGGATCTGTTGAAAA CCGCCCGGCGCGAC AAT GGC-CGTCAGGCGG TGCAGACGGTTTTGG Avi_0801 688464 - 689651 + | hypothetical protein Avi_0805 690309 - 691214 + | transcriptional regulator LysR family mclA 691473 - 694001 + | methyl-accepting chemotaxis protein TERM 770 694025 - 694046 + F 100 -13.7 -5.25803 | GTATGAGGTGAGAGG CGCCCGGTT GAGA GACCGGGCG TTTTTTATGAGCGTT Avi_0808 694467 - 694955 + | Phosphoserine phosphatase protein TERM 771 695111 - 695100 - f 72 -5.8 -4.31835 | AATCGTTAGAATAAA GCTC TCCT GAGC GGTCAAGTATCTGGT TERM 772 695748 - 695777 + G 79 -5.7 -4.7497 | overlap 695750 GCCAATCTGGCCTTC TTCGCGCGTCTTT TGAG GAAGACGCATGGA TTTTTCCTGGATCAC Avi_0811 695442 - 697097 + | ABC transporter nucleotide binding/ATPase protein TERM 773 697552 - 697588 + G 73 -11.5 -3.34609 | overlap 697555 697560 697564 TTTGCGCCGATCCTG GGATCGCTCAGTGATCG GCT CGGTCGCCGGCCGATCC TGTTGATTTCGCTGG TERM 774 697560 - 697590 + G 81 -12.7 -3.54408 | gap 2, overlap 697552 697555 697564 GATCCTGGGATCGCT CAGTGATCGGCTCGG TCG CCG-GCCGATC-CTG TTGATTTCGCTGGCG TERM 775 697564 - 697587 + G 71 -13.2 -2.60283 | gap 1, overlap 697552 697560 697555 CTGGGATCGCTCAGT GATCGGCTCGG TCG CCG-GCCGATC CTGTTGATTTCGCTG tetA 697369 - 698562 + | tetracycline resistance protein TERM 776 698579 - 698543 - T 70 -5.1 -4.4261 | gap 1, opp_overlap 698554 698577, overlap 698554 698557 GTCTCAAGACTAAAA CCAGCGGGAAAG-CAG TTTAGC CCGACCTTCCAGCCGG GCTAAACACGCTCGT TERM 777 698590 - 698554 - T 88 -12.4 -3.60431 | gap 1, opp_overlap 698554 698577, overlap 698543 698557 AAAACCAGCGGGAAA GCA-GTTTAGCCCGACC TTCC AGCCGGGCTAAACACGC TCGTTATGTGTATCT TERM 778 698586 - 698557 - T 90 -15.1 -2.91873 | opp_overlap 698554 698577, overlap 698543 698554 ACCAGCGGGAAAGCA GTTTAGCCCGACC TTCC AGCCGGGCTAAAC ACGCTCGTTATGTGT Avi_0814 698865 - 698605 - | hypothetical protein aceA 700307 - 699018 - | isocitrate lyase TERM 779 701847 - 701882 + G 100 -18.4 -3.53012 | gap 1 CGCCGGTGGAGATCG GACAGGCCTGCCGGATC TGC GAGC-GGCAGGCCTGTC TTTCCAGGGCCGAAC Avi_0818 700556 - 701965 + | transcriptional regulator TERM 780 702637 - 702597 - g 74 -7.7 -4.14392 | gap 1 CTTCAAGCCGGAAAA CGCCAAGAA-GCTCAAGC AGTGCG GCTTGAACATCCTCGACG CCTCGGATGAAACCT TERM 781 703084 - 703061 - g 83 -5.2 -5.00616 | TGGCCTCGCAAAAAA TGGTCAGCGC CGAT GTGCTGAACA ATCCCTCCGTCTATC potF 702088 - 703203 + | ABC transporter substrate binding protein (putrescine) TERM 782 703215 - 703232 + F 100 -12.7 -4.70583 | opp_overlap 703213 GTAAACGAGATGAGG CGGGGCA GAAA TGCCCCG TTTTCTATTGATGGG potG 703306 - 704454 + | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 783 704543 - 704559 + G 76 -3.5 -4.91852 | TTGATTGTCGTCCTC CCCTACC TCT GGCTGGG TTTGTTTTTCCTGGC potB 704528 - 705388 + | ABC transporter membrane spanning protein Avi_0825 705398 - 706213 + | ABC transporter membrane spanning protein Avi_0826 708178 - 706223 - | AsmA family protein TERM 784 707921 - 707947 + g 79 -7.3 -4.68593 | gap 1 TCCTGCGATCTCTAC GTCAT-GGCCGC TCCA GCGGCTGATGGC TTTTTCGATGCTGCC TERM 785 708029 - 708019 - G 73 -3.2 -4.85599 | GGGATGCGACAAAAA CGCA AAG TGCA ACCGCGATGACGGCA pleC 712508 - 708276 - | two component sensor kinase TERM 786 712675 - 712633 - H 95 -15.2 -2.83747 | opp_overlap 712632 712631, overlap 712630 712656 TAATCTCGACAATTA TTTTATTGTGCATCGCAACA TAA TATTGCAATGCACAATAAAC GCTGTTATATGGCCT Avi_0828 712743 - 713192 + | hypothetical protein TERM 787 713224 - 713242 + T 95 -9.5 -5.08601 | opp_overlap 713224 TTGATGAAGATGAGA GGGTCGG TTCGT CCGGCCC TTTTTATTGCCGTCG TERM 788 713322 - 713296 - T 81 -7.2 -4.66833 | GGGGAAGCGCAAAAA GGGGCTTGAAAA ATT CTCCCACGCCCC GTATGTGACCCCTCG ureJ 714166 - 713498 - | urease accessory protein TERM 789 714792 - 714802 + G 72 -4.6 -4.64766 | overlap 714783 ATGGCTGGCGCTGAC GGTC ATC GGCC TTTTTGCCATCTGCC TERM 790 714981 - 714997 + G 75 -5.7 -4.59982 | overlap 714983 TATTCCCGGCGGGCT GATCGCC ATC GGCGGCC TTTATTTCCTTGTGA ureJ 714409 - 715017 + | urease accessory protein TERM 791 715231 - 715265 + F 74 -8.4 -3.88985 | overlap 715225 715254 AATTTCCGAGACGGC GATTGCCGCTGGCTCT GCT GGTGCTGGCGGCAGGC TTTGTCGCCGGTTTT TERM 792 715254 - 715276 + F 93 -9.8 -4.52589 | overlap 715231 715267 CTGGCTCTGCTGGTG CTGGCGGCAG GCT TTGTCGCCGG TTTTGTCTGGCGCGA TERM 793 715440 - 715465 + F 72 -4.7 -4.62069 | CTGTTGCCGGTGCTT GGGATCGCT CTTTCGCT GGCGATCTC TTTTTCCGATCCAAG Avi_0833 715805 - 716425 + | ABC-type uncharacterized transport system, periplasmic component related protein Avi_0834 716851 - 716420 - | hypothetical protein TERM 794 716462 - 716447 - G 72 -9 -3.87373 | opp_overlap 716441 TAGAGTGGTCACAAA TTCCGG GCTG CCGGAA AGGGTGTTGCTAACG Avi_0835 717747 - 716866 - | transcriptional regulator LysR family mmsA 717850 - 719346 + | methylmalonate-semialdehyde dehydrogenase TERM 795 719488 - 719509 + F 100 -10.8 -5.1861 | opp_overlap 719488 AAAAATTATCACCAA GGCGGGTC TCCAAC GGCCCGCC TTTTTTCGTGATAAA TERM 796 719660 - 719646 - f 70 -5.7 -4.431 | TATGGACGGACAAAA TTGGC GCTTT GCCAA GGACCGCCAAGCGGC TERM 797 720151 - 720184 + G 70 -3.7 -4.65933 | gap 1, overlap 720153 720154 GTATCGAGGATCTGC CTCG-TCTGGCAGCTG CAC CGGCTGCCTGAGCCTG TTTGTTTTAAAAGTG aau3 719709 - 720179 + | hypothetical protein TERM 798 720211 - 720233 + F 95 -9 -5.05505 | overlap 720213 AGTGATGATGTAGAG CCCCCTGACC TCC GGTCCGGGCG TTTTTCGTTTGTGGT TERM 799 720648 - 720624 - g 70 -3.6 -4.63218 | gap 1, opp_overlap 720641, overlap 720628 CGTCGTTGAAGAAAA GCTATCGCG ACCTGCTG CGCGA-AGC GACTGGCAATCGCAC gntK 720329 - 720874 + | gluconokinase Avi_0842 721628 - 720891 - | CDPdiacylglycerol diphosphatase protein dadA 722984 - 721737 - | D-amino acid dehydrogenase small subunit TERM 800 721891 - 721863 - G 74 -11.1 -3.57263 | gap 1 ATGGGCATGGCCAAA CGCCA-GCCACA GCCCTT TGTGGCGTGGCG CCTGGCCAATCACCG TERM 801 723000 - 722990 - R 75 -6.8 -4.41353 | overlap 722993 CGACAGACATGAAAA GACC CAC GGTC AAGGATTACTGCCGT TERM 802 723057 - 723090 + r 90 -14.7 -2.74782 | opp_overlap 723063 GCAAATGAAAACTTT CTGAAATGGCAGGAT TTTT ATCCTGCCATTGCGG TGCTTCGGGCTTTCT TERM 803 723084 - 723063 - R 93 -13.1 -3.57309 | opp_overlap 723057 GAAAACTTTCTGAAA TGGCAGGAT TTTT ATCCTGCCA TTGCGGTGCTTCGGG Avi_0846 724242 - 723118 - | hypothetical protein Avi_0847 724472 - 724870 + | hypothetical protein Avi_0849 726278 - 724941 - | Two-component sensor histidine kinase protein TERM 804 725913 - 725945 + g 78 -11.2 -3.66286 | gap 1, opp_overlap 725906 725905, overlap 725915 725920 725920 725940 725940 CAGAATATTGCCATC TGGCAGGCGTCGCGC AACC GCGCG-CGCCCGCTG TTGTTGCGGTGGTGT TERM 805 725915 - 725943 + g 83 -13.8 -3.40878 | gap 1, opp_overlap 725906 725905, overlap 725913 725920 725920 725940 725940 GAATATTGCCATCTG GCAGGCGTCGCGC AACC GCGCG-CGCCCGC TGTTGTTGCGGTGGT Avi_0850 726984 - 726307 - | two component response regulator TERM 806 729005 - 728985 - g 76 -6.8 -4.44667 | gap 1 GTCCGCAATAACAAA GCCAG-GCG TCAG CGCACCGGC GGCAGACATCAAACG mqo 727483 - 729042 + | malate:quinone oxidoreductase TERM 807 730404 - 730429 + G 93 -8.4 -4.77165 | overlap 730406 GGTAGTCTCGCATGG TGGATATGGG GTCTCG CCCATATCTA TTTTCTTATCGGCAC TERM 808 730406 - 730427 + G 75 -8.8 -4.00512 | overlap 730404 TAGTCTCGCATGGTG GATATGGG GTCTCG CCCATATC TATTTTCTTATCGGC ndh 729285 - 730562 + | NADH dehydrogenase Avi_0854 730644 - 730778 + | hypothetical protein Avi_0855 731452 - 731021 - | hypothetical protein TERM 809 731466 - 731448 - G 76 -3 -4.9448 | overlap 731452 AGCCACGAAATAAAA TCCATGCG CGC CCCCTGGA ATGTCCCATTGCCAA TERM 810 732209 - 732224 + G 95 -10.4 -4.84527 | opp_overlap 732207 GTTGAGCAAATCAGT GGCGAC GAAT GTCGCC TTTTTCATCTCTCAA TERM 811 732484 - 732465 - g 78 -3.5 -5.08088 | opp_overlap 732465 732466, overlap 732466 AACGTGGAAGAAAAA GGTGGAC ACCGGA GTCCACG TTTAAAGGATAAAGC Avi_0857 732159 - 733097 + | prophage lambdaBa02 DNA replication protein TERM 812 733187 - 733203 + F 78 -5.2 -4.81163 | opp_overlap 733187 GGTACGCTCTATAAT TTTCTC AATTA GAGAAA TTTTCTTAATGTTTG Avi_0858 733305 - 734531 + | phage lambdaBa02, DNA replication protein Avi_0860 734925 - 735476 + | phage prohead protease, HK97 family Avi_0861 735478 - 736689 + | phage phi-C31 gp36 major capsid-like protein Avi_0862 736724 - 737110 + | hypothetical protein Avi_0864 737113 - 737475 + | Restriction endonuclease protein Avi_0865 737472 - 737960 + | hypothetical protein Avi_0866 737964 - 738434 + | hypothetical protein Avi_0867 738431 - 738742 + | hypothetical protein Avi_0868 738744 - 739661 + | hypothetical protein Avi_0869 739658 - 739969 + | Bacteriophage head-tail adaptor protein TERM 813 740261 - 740241 - g 82 -9 -4.41494 | gap 1, overlap 740245 CATTCTCAAGCAAAA CCCAGC-GG TCAG CCTGCTGGG CAAAGCGCAATCGGC Avi_0871 739966 - 740403 + | Phage terminase protein TERM 814 740633 - 740619 - g 71 -7 -4.19238 | GCGGCAACCGCAAAA CCTCGC TGG GCGCGG CACTGGCTCTTCTCC Avi_0872 740384 - 741976 + | Phage terminase-like protein TERM 815 743483 - 743468 - g 77 -10.4 -3.80014 | ATACGCAGGACGAAA TCCGCC AACG GGCGGA AGAGGCAAACCAATT Avi_0873 741976 - 744081 + | Methyl-accepting chemotaxis protein TERM 816 744372 - 744351 - g 85 -10.9 -3.96148 | gap 1, opp_overlap 744363 744369 CGTTTCCACCAGAAA CGCCAGTCCG TCC CGGA-TGGCG TGAAAACGCTTCCGC Avi_0874 744081 - 744440 + | hypothetical protein Avi_0876 744446 - 745375 + | hypothetical protein TERM 817 745397 - 745416 + T 71 -9.3 -3.49232 | opp_overlap 745397, overlap 745395 CCAAGGCGCGGAAAA CGGTCCA ATGTGA TGGACCG TATTGTCTTTAGGGA TERM 818 745416 - 745397 - T 81 -9.3 -4.09739 | opp_overlap 745397 745395 CCAAGGCGCGGAAAA CGGTCCA ATGTGA TGGACCG TATTGTCTTTAGGGA TERM 819 745463 - 745439 - T 100 -15.9 -3.1355 | opp_overlap 745452, overlap 745443 745452 TTTAGGGAGAGGTAA TCAAGTCGCAA ATT TTGCGACTTGA ACCGGAAGGCGGCAA TERM 820 745459 - 745443 - T 76 -10.9 -3.39142 | opp_overlap 745452, overlap 745439 745452 GGGAGAGGTAATCAA GTCGCAA ATT TTGCGAC TTGAACCGGAAGGCG Avi_0879 746129 - 745830 - | hypothetical protein Avi_0880 746730 - 746206 - | hypothetical protein TERM 821 746770 - 746826 + H 73 -9.1 -3.61178 | gap 3, opp_overlap 746787, overlap 746772 746787 GAAAAAACCAATACC GTCCTATTGATCACCAATTTGGTGCATG TTAG CTTGCACCAAATTGGTGA--AA-GGGGC TTTAACATGAATACA TERM 822 746772 - 746825 + H 70 -10.6 -2.76492 | gap 2, opp_overlap 746787, overlap 746770 746787 AAAAACCAATACCGT CCTATTGATCACCAATTTGGTGCATG TTAG CTTGCACCAAATTGGTGA--AAGGGG CTTTAACATGAATAC TERM 823 746787 - 746812 + H 74 -10.5 -3.14211 | opp_overlap 746787, overlap 746772 746770 CCTATTGATCACCAA TTTGGTGCATG TTAG CTTGCACCAAA TTGGTGAAAGGGGCT TERM 824 746812 - 746787 - H 74 -10.5 -3.22298 | opp_overlap 746772 746770 746787 CCTATTGATCACCAA TTTGGTGCATG TTAG CTTGCACCAAA TTGGTGAAAGGGGCT TERM 825 747018 - 746986 - H 80 -5.6 -4.95876 | gap 2, opp_overlap 747008 AATGAGAATGAAAAA GCCGACGCAACGGCCT CGT AAACC-C-GCGTCGGC TTTTTGAAAAACAAC TERM 826 747206 - 747250 + G 75 -3.6 -4.72556 | gap 1, overlap 747199 747207 747208 747210 CGTACGCTTTTTCGC GGCACGA-CTGCGGAAATTTT GACA AACATTCCCGCAGCTCGTGAG TTTTATCATTTTTCG Avi_0883 747050 - 747400 + | hypothetical protein TERM 827 747660 - 747686 + F 95 -9.4 -5.04601 | opp_overlap 747658 747655 747663 747665, overlap 747663 747681 TGCGGAATAACAACC ATAGAGTCGCCA GTC TGGCGACTCTTC TTTTTGGTTTCTCGA TERM 828 747663 - 747683 + F 100 -15.5 -4.60053 | opp_overlap 747658 747655 747663 747665, overlap 747660 747681 GGAATAACAACCATA GAGTCGCCA GTC TGGCGACTC TTCTTTTTGGTTTCT TERM 829 747683 - 747663 - f 95 -15.5 -3.0663 | opp_overlap 747663 747660 747681, overlap 747658 747655 747665 GGAATAACAACCATA GAGTCGCCA GTC TGGCGACTC TTCTTTTTGGTTTCT TERM 830 747681 - 747665 - f 79 -12.3 -3.07845 | opp_overlap 747663 747660, overlap 747663 747658 747655 AATAACAACCATAGA GTCGCCA GTC TGGCGAC TCTTCTTTTTGGTTT TERM 831 748233 - 748213 - g 81 -15.5 -2.53263 | opp_overlap 748213 GTGATCCTGAATTTA TGGCCGCAT ATA ATGCGGCCA TTTCTCGCAAGGTGG TERM 832 748213 - 748233 + G 100 -15.5 -3.86346 | opp_overlap 748213 GTGATCCTGAATTTA TGGCCGCAT ATA ATGCGGCCA TTTCTCGCAAGGTGG TERM 833 748972 - 748942 - g 71 -11 -3.22476 | overlap 748945 ACGACCTACGAGGAA CAGCCGTCACGCGC CTT GCGCTTGCCGGATG CACGGAAGCTGAAAT intD 748068 - 749117 + | phage-related integrase ppx 749556 - 751367 + | exopolyphosphatase TERM 834 752066 - 752028 - g 79 -7.5 -4.65895 | GGTGGCACGGAAAAA GACCTGCTCAACATGCT CAAGC AGAATTTCAAGCAGGTC ATCCATATCAAGCCC ftsJ 751452 - 752237 + | cell division protein Avi_0890 752249 - 752632 + | hypothetical protein Avi_0891 753961 - 752660 - | GGDEF family protein TERM 835 752767 - 752802 + g 75 -9.6 -3.83675 | gap 1, opp_overlap 752766 752768 752769, overlap 752768 GCCTGCCGAAATAAT AGC-CCTGGCCCATGGT GCA GCCGAGGGCCAGGAGCC TTGTTGCTTCGCTTA TERM 836 752768 - 752801 + g 74 -13.1 -2.89482 | gap 1, opp_overlap 752766 752768 752769, overlap 752767 CCTGCCGAAATAATA GC-CCTGGCCCATGGT GCA GCCGAGGGCCAGGAGC CTTGTTGCTTCGCTT TERM 837 752801 - 752768 - G 71 -10.2 -3.54488 | gap 1, opp_overlap 752768 752767, overlap 752766 752769 CCTGCCGAAATAATA GC-CCTGGCCCATGG TGCAG CCGAGGGCCAGGAGC CTTGTTGCTTCGCTT Avi_0893 755953 - 754289 - | two component sensor kinase TERM 838 754416 - 754374 - G 86 -16.2 -2.82516 | GGCTTGACGATGACA TCGTCCATGCCCGCGTCCAG GCA CCGGCCACGGTCATGGTCGA AGGCTGGCACCAGCA TERM 839 756239 - 756218 - H 95 -14.5 -3.16564 | TTGGTATTCGATTAA TGCCCCCTT AATG AAGGGGGCA AGAGGTCGGGAAAGA TERM 840 756269 - 756281 + H 74 -6.2 -4.44667 | ATCGCGGTGAATTGC GCCC TTGCC GGGC TTTCTTCTTGGCCGA TERM 841 757345 - 757365 + G 70 -3.9 -4.56597 | CATGCTGCGGGCCTT CCGCCCT GGTGCAA ATGGCGG TTTTTCCGAAGGCGC mutL 756317 - 758170 + | DNA mismatch repair protein MutL Avi_0896 758287 - 758517 + | hypothetical protein lpxK 759572 - 758535 - | tetraacyldisaccharide 4'-kinase TERM 842 758703 - 758727 + g 78 -6.3 -4.62069 | TAGCCGGGCCTGATC CTTGGCGGTGG TGA CCAGCGACAGG TTTTTGGCCTCAGCC Avi_0898 760323 - 759583 - | phosphatase kdtA 761639 - 760320 - | 3-deoxy-D-manno-octulosonic acid transferase-like protein Avi_0900 762042 - 761806 - | hypothetical protein TERM 843 762065 - 762087 + r 70 -4.8 -4.56775 | overlap 762069 TTCCCATCATCATTC TCCCGCAGAT GTC ATCTGCTTGA TTTTTACAGCAAGGT TERM 844 762069 - 762083 + r 72 -8.6 -3.80855 | overlap 762065 CATCATCATTCTCCC GCAGAT GTC ATCTGC TTGATTTTTACAGCA Avi_0902 762969 - 762157 - | inositol monophosphatase family protein TERM 845 762346 - 762361 + g 73 -3.2 -4.72272 | overlap 762347 GTCGGCTGCGGCCAA GTCCCA GTCA TGGGAG TTTTTCATCACCAGC Avi_0903 764358 - 763012 - | PmbA/TldD related protein TERM 846 763195 - 763181 - G 75 -9.2 -3.91897 | opp_overlap 763180 TTCTCGATCCAGAAA CCGGAG GCC CCCCGG CTGTAATCGCCGGTG TERM 847 764449 - 764496 + H 100 -17.2 -3.78409 | opp_overlap 764447 764446 AGCAGGGATAAAGTG CTATAGCGACCTGATTGCACTC GATA GGGTGCGATGACGTCGCTATAG TTTGCATTCCCTTCC kefB 764570 - 766396 + | glutathione-regulated potassium-efflux system protein Avi_0906 767425 - 766547 - | hypothetical protein TERM 848 767084 - 767066 - G 78 -6.6 -4.64766 | TCGAGATGGCAAAAA GGCGCGCA GAA TACGCTCC AGGTTGAACTGTCCG TERM 849 767384 - 767398 + g 70 -4.2 -4.66833 | overlap 767386 CGGCGTGCTGGGTCC TACCTC AAC GAGGGA TTTTTGGGATTGGAC Avi_0907 768155 - 767595 - | hypothetical protein TERM 850 767826 - 767799 - G 77 -12.2 -3.53012 | gap 1, overlap 767811 GGGCGGGTCGGCAAA CAGCA-GATGGAA CGG TTCCATCGTGCTG ACCGAACCGAGGTCG TERM 851 767886 - 767861 - G 71 -8.3 -4.07885 | gap 1, opp_overlap 767861 767853 767851 CATCGCGTCGCAAAA TCTTGGCGCGGC CAT GCAG-GCCAAGA TTGTCGATATTTTCC rluB 770276 - 768162 - | ribosomal large subunit pseudouridine synthase B codA 770349 - 770798 + | cytidine and deoxycytidylate deaminase TERM 852 770835 - 770807 - T 95 -13.8 -3.40775 | gap 1, overlap 770805 770808 ACGGTGACGGAAATA TCGCCGCGC-CCC GAAT GGGCGCGCGGCGG GCGGCGCGGCGCAAG TERM 853 770834 - 770808 - T 100 -17.3 -2.64144 | gap 1, overlap 770807 770805 CGGTGACGGAAATAT CGCCGCGC-CCC GAAT GGGCGCGCGGCG GGCGGCGCGGCGCAA Avi_0912 771735 - 770854 - | metallo-beta-lactamase superfamily protein TERM 854 772378 - 772389 + G 72 -5.8 -4.42238 | TGACGTCTTATATGG TGGC GCTT GCCA TTTTCATTCCGGTCA TERM 855 772650 - 772675 + G 93 -12.5 -4.3739 | overlap 772669 772671 CCCGGCCTTGTCGGT CCGCTGGCCGG GCCG CCGGTCGGTGG TTTTATCACCACCTA TERM 856 773513 - 773525 + G 76 -3.3 -4.87665 | overlap 773514 TTTTCATGTGGCCTT TGCCG TCG TGGCG TTTTTGTCGCTGGCC Avi_0914 772230 - 773651 + | MFS permease TERM 857 773670 - 773692 + T 85 -11.3 -3.68962 | gap 1, opp_overlap 773670 GTGGGCAATAAAAAA GGCGGGAGCC TTTC GG-TCCCGCC TTCTCTCTATTAACG TERM 858 773692 - 773670 - T 100 -11.3 -5.4505 | gap 1, opp_overlap 773670 GTGGGCAATAAAAAA GGCGGGAGCC TTTC GG-TCCCGCC TTCTCTCTATTAACG Avi_0915 774268 - 773735 - | hypothetical protein Avi_0916 775399 - 774518 - | calcium-binding protein regucalcin TERM 859 775837 - 775826 - H 77 -5.8 -4.60255 | opp_overlap 775825 AGAATTTTCTAAAAA CCTG GTTT CAGG CCTTGGTATTGGCAG avhR 776222 - 776914 + | transcriptional regulator LuxR family nrt 777059 - 778255 + | ABC transporter nucleotide binding/ATPase protein TERM 860 778682 - 778722 + F 100 -14 -4.89966 | gap 1, opp_overlap 778682 ATCGCCCTCACAAAA CGCCGCCTTAACCG-TGCC TCAG GGCAATGGTTTTGGCGGCG TTTGTTTTTGGCTCT TERM 861 778722 - 778682 - f 95 -11.8 -4.37092 | gap 1, opp_overlap 778682 ATCGCCCTCACAAAA CGCCGCCTTAACC-GTGCC TCAG GGCAATGGTTTTGGCGGCG TTTGTTTTTGGCTCT Avi_0923 778842 - 780002 + | mrp protein TERM 862 780054 - 780018 - f 83 -12.3 -3.34902 | opp_overlap 780046, overlap 780016 780021 GGTCAGCACAGAATA GAGCCGCCGTTGCAG ATTGATA CTGCAACGGCGAACC GCACCGTTGTAGGGT TERM 863 780051 - 780021 - f 89 -14.8 -2.53964 | opp_overlap 780046, overlap 780018 780016 CAGCACAGAATAGAG CCGCCGTTGCAG ATTGATA CTGCAACGGCGA ACCGCACCGTTGTAG TERM 864 780833 - 780891 + G 72 -8.6 -3.85698 | opp_overlap 780876, overlap 780834 CCGGTATGCGGGTCG ATGCGCTGTCCGGCGATGTGTTCGTC GATCGCA GCCGGACCAAGCGCCGGGCGGCGCGC TTTCTGGAGGACCGG TERM 865 780834 - 780890 + G 71 -12.1 -2.91276 | opp_overlap 780876, overlap 780833 CGGTATGCGGGTCGA TGCGCTGTCCGGCGATGTGTTCGTC GATCGCA GCCGGACCAAGCGCCGGGCGGCGCG CTTTCTGGAGGACCG corA 780400 - 781341 + | magnesium/cobalt transport protein TERM 866 782502 - 782529 + G 75 -10.6 -3.78329 | TATTTCCGTCACCGG CGCCATGGTCGT CACG ACAATCATGGCG TTTGAATTCGTGCGC Avi_0927 781357 - 783261 + | potassium uptake protein TERM 867 783331 - 783344 + F 75 -4.5 -4.73388 | gap 1, opp_overlap 783329, overlap 783329 TTCCGGGAATTCACC GCC-CG GAA CGCGGC TTTTTCATGCCACTT atpI 783570 - 783917 + | ATP synthase subunit I TERM 868 783941 - 783920 - f 77 -10.1 -3.60979 | overlap 783918 CAAAGGGAAATAACA CGGCGGATG CCTG CATCCGGCG GACGAGGTAAGGAAC TERM 869 784337 - 784357 + G 76 -3.2 -4.91109 | TCACCAGCCAGATCG TCGTCACC TTTGC GTTGGCGA TTTTTGTGATCGGCA atpB 783994 - 784746 + | ATP synthase atpC 784814 - 785041 + | ATP synthase C chain TERM 870 785091 - 785057 - f 76 -12.8 -2.53876 | opp_overlap 785058 TTTCAGCGCAATTCA GGATCACGGCCGGCCT TCG ATGTCGGCCGTGATCT TTTGTATTAGCAGGA TERM 871 785058 - 785090 + F 100 -18.5 -4.66537 | opp_overlap 785057 TTCAGCGCAATTCAG GATCACGGCCGGCCT TCG ATGTCGGCCGTGATC TTTTGTATTAGCAGG TERM 872 785203 - 785182 - g 78 -10.9 -3.72141 | gap 1 AGACCCACACGGAAA CCGGCGTTCC CGC GGAA-GCCGG ACATGGACGAGGCGT atpB 785121 - 785705 + | ATP synthase atpF 785710 - 786195 + | ATP synthase F0 B subunit TERM 873 786222 - 786238 + T 100 -11.5 -5.4251 | opp_overlap 786222 AAGGATGAATTGAAA GCCGGGT TCA GCCCGGC TTTTTTATGTCTGGG TERM 874 786238 - 786222 - T 84 -10.8 -3.79445 | opp_overlap 786222 AAGGATGAATTGAAA GCCGGG TTCAG CCCGGC TTTTTTATGTCTGGG rnhB 787191 - 786352 - | ribonuclease HII TERM 875 786784 - 786774 - G 77 -2.4 -5.08601 | opp_overlap 786773 GGATCTGAATAAAAA GCGC CTC GCGT TTGGCAGCGGTAAGC TERM 876 787322 - 787292 - R 100 -21.4 -3.37474 | opp_overlap 787298, overlap 787282 787298 GACAAGACGGCAGAA TACCAACAGCCACT GTT AGTGGCTGTTGGTA AAAGGCTTCGGCGTC TERM 877 787316 - 787298 - R 89 -13.2 -3.42013 | opp_overlap 787298, overlap 787292 787282 ACGGCAGAATACCAA CAGCCACT GTT AGTGGCTG TTGGTAAAAGGCTTC TERM 878 787298 - 787316 + r 85 -13.2 -3.14881 | opp_overlap 787298 787292 787282 ACGGCAGAATACCAA CAGCCACT GTT AGTGGCTG TTGGTAAAAGGCTTC Avi_0937 788747 - 787590 - | hypothetical protein TERM 879 788762 - 788775 + H 76 -9.5 -3.74693 | TTTGGAACTCCTGAC GGGCC AACC GGCCC TTTCATGAGCTCAGA Avi_0939 789018 - 789539 + | hypothetical protein moaB 790167 - 789619 - | molybdenum cofactor biosynthesis protein B ispE 791151 - 790279 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Avi_0942 793058 - 791199 - | hypothetical protein TERM 880 792627 - 792641 + g 88 -5.6 -5.22943 | overlap 792629 ATAGGCAAGGACTTT TTCCGC CGT GCGGTA TTTTTTGCCTTTGAT TERM 881 792629 - 792639 + g 74 -8.2 -4.23298 | overlap 792627 AGGCAAGGACTTTTT CCGC CGT GCGG TATTTTTTGCCTTTG TERM 882 793187 - 793169 - R 74 -10.2 -3.52652 | GCCAGCGAATCAGAA GGCTGCGA GGC TCGCTGCC AGCCAGGTCGCTGAG ispB 794449 - 793433 - | octaprenyl-diphosphate synthase TERM 883 793873 - 793896 + g 73 -12.4 -3.02144 | opp_overlap 793886 TAGGGCCGACTTCGG CGGCGGCG GCAAACAG CGCCGCCG TCTTGGCACGAATGA TERM 884 794733 - 794711 - g 84 -4 -5.30448 | overlap 794732 AAACAAACATAAAAA GCCGTTGGCG ACC CGGCAAGAGC GGAATTTCTCTATCC Avi_0944 794668 - 795006 + | hypothetical protein TERM 885 795192 - 795210 + G 88 -13.8 -3.77087 | overlap 795206 CTGCAGATCTGGGCG CTGGCGCC GGT GGCGCCGG TTTGGCTGTTGCCTC Avi_0945 795098 - 795826 + | hypothetical protein TERM 886 796102 - 796086 - g 72 -5.1 -4.57569 | overlap 796087 CCACTTCTGGAAAAA GCCTTCA AGT TGAAGGA CAGTCCGGCTGTGGT sohB 795933 - 796799 + | proteinase sohB Avi_0948 796899 - 797114 + | hypothetical protein Avi_0950 797651 - 798655 + | Signal transduction histidine kinase protein glyQ 798766 - 799737 + | glycyl-tRNA synthetase alpha subunit TERM 887 801184 - 801206 + G 93 -12.7 -4.13945 | gap 1 TCAGCGCTGCTGATG GCCGC-CCCG ATGG CGGGCGCGGC TTTTGAGGTGGAACT aroA 800635 - 801906 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 888 802246 - 802226 - g 78 -8.2 -4.48997 | GAAGGAAGAAAAGAA GGGGCCGA GCGTG TCGGCGCC AGAAAAGGCCATCGA TERM 889 803115 - 803101 - g 71 -10 -3.57144 | TGCCGGATCTGGAAA CGCTTG AAG CAAGCG CTGCAAAATTCGGCC TERM 890 803160 - 803144 - g 70 -3.6 -4.62069 | overlap 803145 CCTCGACCTGAAAAA GCCGCT CGACC AGCGGA TGGCCAAGCTGGATG TERM 891 804083 - 804071 - g 71 -6.9 -4.11394 | opp_overlap 804062 804061 ACTCGACGCCGAAAA GGCGC TTT ACGCC GCCATCGTGCAAGCC glyS 802014 - 804308 + | glycyl-tRNA synthetase beta chain TERM 892 804352 - 804314 - f 100 -13.8 -3.90112 | TGCCGGGTAAGGAAA GCAGGCGCAGACATGGAT AAA ATCCTGATCAGCGCCTGC CTGATGGGTCGCCCG Avi_0957 804326 - 804817 + | hypothetical protein TERM 893 804853 - 804820 - T 100 -16.1 -3.02043 | opp_overlap 804803 804826 804831, overlap 804826 AAGCGGCTCTTAATA GCAAAAGCCGCCGGA TTGC TCCGACGGCTTTTGT CTCGGGAGTGATCTG TERM 894 804847 - 804826 - T 100 -13.7 -4.4261 | opp_overlap 804803 804826 804831, overlap 804820 CTCTTAATAGCAAAA GCCGCCGGA TTGC TCCGACGGC TTTTGTCTCGGGAGT TERM 895 804826 - 804847 + T 100 -11.5 -4.52857 | opp_overlap 804820 804826, overlap 804803 804831 CTCTTAATAGCAAAA GCCGCCGGA TTGC TCCGACGGC TTTTGTCTCGGGAGT mcpA 806703 - 804871 - | methyl-accepting chemotaxis protein TERM 896 805406 - 805416 + g 75 -5.4 -4.66163 | ATGATCTTGGTGATT TCCT CGG AGGA TTTTTCGATGCCACT TERM 897 806335 - 806361 + g 72 -9.5 -3.69354 | overlap 806334 CAGTTCGTCGCGATA GGCAAAGCC CTTGCTGTC GGCTTTGCC TTTAAAGTTCTGCCC TERM 898 806399 - 806369 - G 70 -11.8 -2.71712 | overlap 806368 GCTTTGCCTTTAAAG TTCTGCCCGACCCG TTT CGGATCGGGATGAA ACAGCATGTTCACAT TERM 899 806781 - 806761 - R 86 -3.9 -5.41143 | opp_overlap 806762 CATTTGCTAAAAAAA GCCTAAAGA CAG TCCCTTGGC AGTTTTTTGGTTGTA Avi_0959 807353 - 806913 - | hypothetical protein purD 808709 - 807429 - | phosphoribosylamine--glycine ligase TERM 900 807930 - 807912 - G 83 -8.1 -4.57073 | overlap 807924 CAGCCCTGCGAAAAA CACGCCG GAAAA CGGCATG CCCAGTTCCGCCATG TERM 901 807948 - 807924 - G 71 -7.1 -4.11773 | overlap 807912 AAACACGCCGGAAAA CGGCATGCC CAGTTCC GCCATGCCG CGCATGGTCGGCTCG Avi_0961 809830 - 808763 - | hypothetical protein TERM 902 810442 - 810432 - g 79 -6.8 -4.56775 | ATTGCCCGCGAAAAA GGCT TGG AGCC GCTGGCCAATGCGAT TERM 903 811961 - 811937 - g 95 -13.5 -4.11216 | GGCTGAGCTGGAAAA GCCGGGCCGTG ACC CACGCCCCAGC TTCAAGACTGCCATC Avi_0962 810063 - 812375 + | hypothetical protein TERM 904 812448 - 812487 + F 100 -15.8 -4.08692 | opp_overlap 812449 812454, overlap 812449 812454 AACTATTGCGGGAAC ACAAAACACGCGCACATC CTGA GGTGAGCGCGTGTTTTGC TTTTCGGAAAAGTTC TERM 905 812449 - 812486 + F 100 -19.3 -3.04894 | opp_overlap 812449 812454, overlap 812448 812454 ACTATTGCGGGAACA CAAAACACGCGCACATC CTGA GGTGAGCGCGTGTTTTG CTTTTCGGAAAAGTT TERM 906 812486 - 812449 - f 100 -17.9 -3.0263 | gap 1, opp_overlap 812448 812449 812454, overlap 812454 ACTATTGCGGGAACA CAAAACACGCGCACATCC TGA GG-TGAGCGCGTGTTTTG CTTTTCGGAAAAGTT TERM 907 812481 - 812454 - f 100 -12 -4.66537 | gap 1, opp_overlap 812449 812448 812454, overlap 812449 TGCGGGAACACAAAA CACGCGCACATCC TGA GG-TGAGCGCGTG TTTTGCTTTTCGGAA TERM 908 812454 - 812481 + F 100 -13.4 -4.67038 | opp_overlap 812454 812449, overlap 812449 812448 TGCGGGAACACAAAA CACGCGCACATC CTGA GGTGAGCGCGTG TTTTGCTTTTCGGAA TERM 909 812711 - 812731 + G 77 -2.4 -5.08824 | overlap 812712 TTTCGGTGATGGTTC GGGACCGC CGATT GCGATCCA TTTTTTCGATGACGA TERM 910 813637 - 813657 + G 77 -10.3 -3.85817 | opp_overlap 813623 ACCGGTTCATGGCAC GCCGCGATG AGG CGGCGCGGC TTTATGACGAACGCT cfa 812610 - 813866 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 911 814418 - 814448 + G 86 -6.1 -4.91873 | gap 1 CGTGGTGATCTATCC CTTCG-CCAAGCGG TTTA CCGATTGGCCGCAG TTTTTCCTTGGTCTG ubiA 813939 - 814892 + | 4-hydroxybenzoate polyprenyl transferase Avi_0966 814967 - 815242 + | hypothetical protein TERM 912 815504 - 815524 + G 76 -3.2 -4.96848 | gap 1, overlap 815506 CGGATGGCTGGCATA TGGCCACCC ATGC GGG-GGCGA TTTTTGTGTCGGCGC Avi_0967 815239 - 816306 + | cation efflux system protein TERM 913 816396 - 816369 - T 82 -9.1 -4.19735 | opp_overlap 816371 CGCCTCAAAACGAAA CATGGCCCGCC TTTTCC GGTGAGCCATG TTAAAATATTCGCGT Avi_0968 817009 - 816428 - | hypothetical protein Avi_0969 817616 - 819799 + | hypothetical protein TERM 914 819824 - 819850 + F 90 -11.7 -3.91032 | opp_overlap 819824 TATCTGTTATCTAAA TCCCCTAGATC CTTCC GATTTAGGGGA TTTATACAGTCGTTC TERM 915 819850 - 819824 - f 73 -9.5 -3.6502 | opp_overlap 819824 TATCTGTTATCTAAA TCCCCTAGATC CTTCC GATTTAGGGGA TTTATACAGTCGTTC modA 819932 - 820750 + | molybdate ABC transporter periplasmic molybdate-binding protein TERM 916 821007 - 821021 + G 72 -8.5 -3.92869 | ACCTTCGGGCGGCGC GGCGC GGTCG GCGCC TTTCTGGATCAATGG TERM 917 821167 - 821193 + G 76 -12.2 -3.39784 | opp_overlap 821158, overlap 821164 TGGAAACGGCAGCAG CCACGCTCGGCG CAT CGCCGATCATGG TGTTCTTCACCGTGA modB 820782 - 821477 + | molybdate ABC transporter permease protein TERM 918 822080 - 822063 - g 71 -12.7 -2.56596 | overlap 822059 CGGTTGAGGAAGTCA CCCGGCT GGCC AGCCGGG TGGTGACAATGACCA modC 821474 - 822571 + | molybdate ABC transporter ATP-binding protein modE 823001 - 822603 - | molybdenum-binding transcriptional repressor TERM 919 822855 - 822815 - G 75 -8.8 -4.07568 | overlap 822819 TTTCGTCGGCCAAAA GCCAGGCACGGCGGTAGG ACATG CCCATCGCAGCGCCCGCC GCGCGGATCGAGCCA Avi_0975 824431 - 823001 - | FAD dependent oxidoreductase TERM 920 823100 - 823114 + g 74 -11.4 -3.59979 | GTCCGGTCTTGTCTG CGCCAG TTC CTGGCG TTTCAGCTGGCCGAC Avi_0976 825458 - 824487 - | hypothetical protein TERM 921 825979 - 825967 - g 73 -3.3 -4.81083 | opp_overlap 825967 CTCAACCAGGAAAAA CTGTC GCT GACCG ATTATGGCCGCCTGA Avi_0978 825667 - 826737 + | GGDEF family protein TERM 922 827010 - 827052 + F 100 -29.6 -4.8743 | opp_overlap 827016 AAATCGATGCGTCAA CCTAAAGTCTGTCAGGTTCA GAT TGAACCTGACAGACTTTAGG TTTCTTTGTTTTCGA TERM 923 827046 - 827016 - f 100 -21.4 -3.75332 | opp_overlap 827010 ATGCGTCAACCTAAA GTCTGTCAGGTTCA GAT TGAACCTGACAGAC TTTAGGTTTCTTTGT mcpC 827614 - 829449 + | methyl-accepting chemotaxis protein TERM 924 829534 - 829567 + F 90 -13.3 -3.51329 | gap 1, opp_overlap 829533 829536, overlap 829558 AAAATGGCAACAATT GACTCGCTA-TCCGAT GCT ATCGGATTGGCGGGTC TTGTCGTTGCGGGTA TERM 925 831055 - 831045 - g 74 -6.8 -4.2558 | GATTGTCGAGGAAAA TGCC TTC GGCA TCCGCTCTCCCGCTT Avi_0981 829915 - 831204 + | ring hydroxylating dioxygenase alpha-subunit TERM 926 831549 - 831559 + G 70 -2.4 -4.84527 | opp_overlap 831539 ATCAAGGCCTTCGGA CCGC TTG GCGA TTTTTCCTATGTGAA Avi_0982 831201 - 832289 + | ferredoxin I TERM 927 832279 - 832309 + T 85 -11.8 -3.68325 | opp_overlap 832279 832280, overlap 832280 CAGGCGATGTTGAAA TCGAGGTCTGATCC GAA GGATCGGTCCTCGC TTGTCTTACAGTCTG TERM 928 832309 - 832279 - T 73 -9.6 -3.57462 | opp_overlap 832279 832280, overlap 832280 CAGGCGATGTTGAAA TCGAGGTCTGATCC GAA GGATCGGTCCTCGC TTGTCTTACAGTCTG TERM 929 832280 - 832308 + T 95 -15.3 -2.80513 | opp_overlap 832280 832279, overlap 832279 AGGCGATGTTGAAAT CGAGGTCTGATCC GAA GGATCGGTCCTCG CTTGTCTTACAGTCT TERM 930 832308 - 832280 - T 81 -13.1 -2.74263 | opp_overlap 832279 832280, overlap 832279 AGGCGATGTTGAAAT CGAGGTCTGATCC GAA GGATCGGTCCTCG CTTGTCTTACAGTCT Avi_0983 833063 - 832458 - | hypothetical protein TERM 931 832495 - 832515 + g 72 -4.7 -4.56775 | gap 1, overlap 832492 CGCAGTGCCGAGGTG CGTGC-GC CCAAGA GCAGCACG TTTTTCAGCGCCACT Avi_0984 833389 - 833847 + | hypothetical protein Avi_0985 834900 - 833905 - | divalent cation transporter TERM 932 835308 - 835270 - g 81 -11 -3.90112 | gap 2, overlap 835271 TTGCCGCCAATGAAA TCGCG-CC-GCTGGCCGC AAATG GCGACCGGCAGGGCGCGA AACTGGTGGATGGCA TERM 933 835305 - 835271 - g 74 -12.7 -2.93853 | overlap 835270 TGCCGCCAATGAAAT CGCGCCGCTGGCCGC AAATG GCGACCGGCAGGGCG CGAAACTGGTGGATG TERM 934 835678 - 835664 - g 78 -8.6 -4.11216 | opp_overlap 835663 TGCCGAGCGCCAAAA CGATAG CAC CTATCG GATTTTCGGTCAGAA TERM 935 836284 - 836294 + G 72 -4.6 -4.57341 | overlap 836268 836279 CCCGCCACTGGCAGG CGCG TGC TGCG TTTTTGACGCCGATT mmgC 835119 - 836894 + | acyl-CoA dehydrogenase TERM 936 837036 - 837062 + G 76 -13 -3.14132 | opp_overlap 837029, overlap 837031 CTGAATGAGGCGCAG GGTGACGACACG GTG CGTGTCGTCGCG TTCCTCGGCACCGAA Avi_0987 836898 - 837656 + | enoyl-CoA hydratase/isomerase mcpA 839852 - 837765 - | methyl-accepting chemotaxis protein TERM 937 839165 - 839179 + g 71 -10 -3.53012 | opp_overlap 839164 TTTCCACCAAGCCAC CACCGA TTT TCGGTG TTTCAGCCGGAAAGA TERM 938 839344 - 839332 - G 71 -7.7 -4.05446 | GTTTTCAAGGAGAAA TCGCT GGC AGCGA CGCCATACAATTGGC TERM 939 839960 - 839950 - H 74 -8.2 -3.89881 | AGCAATGTGCACAAA GCCG GAT CGGC ACGTTGCTATCGCGT TERM 940 840381 - 840422 + H 100 -13.9 -4.9645 | gap 1, overlap 840384 840408 840414 TTATGCAGCAGTTCT CTT-GAGTCTGTCAGGTTCA GAT TGAACCAGACAGACACTAAG TTTTCTTGTTGTCGT TERM 941 840384 - 840418 + H 95 -15.8 -2.88634 | overlap 840381 840408 840414 TGCAGCAGTTCTCTT GAGTCTGTCAGGTTCA GAT TGAACCAGACAGACAC TAAGTTTTCTTGTTG Avi_0989 840527 - 840838 + | hypothetical protein rumA 842097 - 840841 - | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 942 842057 - 842096 + g 79 -13 -3.37796 | gap 1, overlap 842028 842026 GCAATGCCATCGCCC TGGGCGCCGAGGCTGTTGA TCG TCAAT-GTCTCGGTGCTCA TTCTGCATCCTCAGG Avi_0992 842885 - 842094 - | hemolysin A Avi_0993 843258 - 842941 - | hypothetical protein TERM 943 845210 - 845233 + G 72 -8.8 -3.83502 | gap 1 CGGCTCATCCTGTCT CCAG-CGCTGC ATC GCAGCGTCCGG TTTCCTCTCCGGCTC mcpG 843382 - 845331 + | methyl-accepting chemotaxis protein TERM 944 845622 - 845660 + F 70 -6.8 -4.13728 | opp_overlap 845632, overlap 845626 AACCTCCTCGCTACT TTTATACGAAGAGTCATT GAA GATGACTCTTCGTATTCC TTTTGCAAATATCTC TERM 945 845626 - 845656 + F 100 -16.4 -3.67622 | opp_overlap 845632, overlap 845622 TCCTCGCTACTTTTA TACGAAGAGTCATT GAA GATGACTCTTCGTA TTCCTTTTGCAAATA TERM 946 846800 - 846780 - g 78 -3.9 -5.01732 | AAGTGCTGCAAAAAA TGGATGCCA TTG TCGCGTCCA TGGTCAATCAGGAAA Avi_0996 846617 - 848560 + | methyl-accepting chemotaxis protein TERM 947 848594 - 848635 + T 100 -23.9 -3.60234 | opp_overlap 848597 848602, overlap 848597 848602 CTGGTGGGAGTATGA CAACAAAACGCCGCTGGCT TTCT GGCCAGCGGCGTTTTGCTG TTTCAGGCTGTCTGG TERM 948 848597 - 848632 + T 100 -24.2 -2.62171 | opp_overlap 848597 848602, overlap 848594 848602 GTGGGAGTATGACAA CAAAACGCCGCTGGCT TTCT GGCCAGCGGCGTTTTG CTGTTTCAGGCTGTC TERM 949 848632 - 848597 - T 100 -23.5 -3.44051 | opp_overlap 848597 848594 848602, overlap 848602 GTGGGAGTATGACAA CAAAACGCCGCTGGC TTTCTG GCCAGCGGCGTTTTG CTGTTTCAGGCTGTC TERM 950 848602 - 848627 + T 100 -18.3 -4.49756 | opp_overlap 848597 848602, overlap 848597 848594 AGTATGACAACAAAA CGCCGCTGGCT TTCT GGCCAGCGGCG TTTTGCTGTTTCAGG TERM 951 848627 - 848602 - T 100 -17.6 -4.81814 | opp_overlap 848602 848597 848594, overlap 848597 AGTATGACAACAAAA CGCCGCTGGC TTTCTG GCCAGCGGCG TTTTGCTGTTTCAGG dxs 850604 - 848685 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 952 850604 - 850617 + g 74 -2.3 -4.9218 | TTGGCTTCGATGTCA CAGGC TCCA GCCTC TTTTTCTCATCACTC xseB 851148 - 850897 - | exodeoxyribonuclease VII small subunit Avi_0999 852086 - 851151 - | deacetylase Avi_1002 852170 - 852571 + | hypothetical protein kka 853449 - 852574 - | aminoglycoside phosphotransferase bioY 854069 - 853506 - | biotin synthesis BioY protein TERM 953 853888 - 853830 - G 75 -9.6 -3.90744 | gap 3, overlap 853827 GGTGGCGCCAAACAA TGCGTTCAGGCCGCCGTGGCCGCCCGCCA GCAC TGGCAGGC--CCATGGCGACCAGCA-GCA CGACCAGCGCATAGG Avi_1006 854703 - 854083 - | ABC transporter membrane spanning protein TERM 954 854196 - 854170 - G 77 -7.8 -4.33248 | CAAGGCCAGAATAAA CAGCGGCCCCAG CAT CCGGTGCAGCCG CACGGGAATGCCACG Avi_1007 855377 - 854697 - | ABC transporter nucleotide binding/ATPase protein (cobalt) TERM 955 854932 - 854912 - G 71 -7.5 -4.18018 | TCGGTTCATCGAAAA TCACCAGAC CGG GCCGGGTGA CCAGAACAGCGGCCA speB 855514 - 856470 + | agmatinase TERM 956 856542 - 856516 - f 76 -10.9 -3.37119 | overlap 856512 856514 CAAAAAGAGAACATA CCCTATCGTCA GCTTA TGGCGATAGGG ATAGACAACAGGACG Avi_1010 856531 - 857724 + | hypothetical protein Avi_1011 858172 - 857714 - | hypothetical protein TERM 957 858252 - 858216 - R 85 -11.8 -3.61239 | gap 1, opp_overlap 858225, overlap 858217 858225 CATACCGAGAGATAA CGCAAAAAAGGGTGTGC CGCC ACACACCCTTCTTT-CG CATAGCCATGGCAAA TERM 958 858253 - 858217 - R 73 -11.8 -2.76261 | gap 1, opp_overlap 858225, overlap 858216 858225 ATACCGAGAGATAAC GCAAAA-AAGGGTGTGC CGCC ACACACCCTTCTTTCGC ATAGCCATGGCAAAG TERM 959 858244 - 858225 - R 100 -10 -5.20154 | opp_overlap 858225, overlap 858216 858217 AGATAACGCAAAAAA GGGTGTGC CGCC ACACACCC TTCTTTCGCATAGCC TERM 960 858225 - 858244 + r 78 -9.3 -3.9392 | opp_overlap 858225 858216 858217 AGATAACGCAAAAAA GGGTGTG CCGCCA CACACCC TTCTTTCGCATAGCC Avi_1012 858580 - 858275 - | hypothetical protein Avi_1013 859397 - 858819 - | hypothetical protein ribA 860587 - 859487 - | 34-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II aroC 861693 - 860599 - | chorismate synthase TERM 961 860702 - 860716 + g 75 -9.2 -3.88787 | opp_overlap 860702 CGGATGCCGACGCAA GGGTCG TGG CGGCCC TTTGTGCGAATATCG Avi_1017 864991 - 861836 - | GGDEF family protein TERM 962 863237 - 863252 + g 83 -7.6 -4.68424 | opp_overlap 863237 GGCCGTCACATCGAA GCTGAT GCCG ATCAGC TTTTTGCGTCCGTTA Avi_1019 865678 - 865938 + | hypothetical protein gpmB 866539 - 865949 - | phosphoglycerate mutase fabI 867464 - 866586 - | enoyl-(acyl-carrier-protein) reductase dnaJ 868884 - 867595 - | molecular chaperone DnaJ family TERM 963 868110 - 868122 + g 71 -10.5 -3.57792 | opp_overlap 868110 GGGCCTTTTCGAGAA CCGGC GGC GCCGG TTTGCGGATGCGTCG TERM 964 868334 - 868359 + g 78 -11.1 -3.6502 | overlap 868306 868335 868341 GCCGTTTCGGCGGTG TCGGGAGCCGC TTTC GCGGTTTCCGG TTTCGCTGCGGCCTG TERM 965 868335 - 868358 + g 70 -12.4 -2.78798 | overlap 868306 868334 868341 CCGTTTCGGCGGTGT CGGGAGCCGC TTTC GCGGTTTCCG GTTTCGCTGCGGCCT TERM 966 869231 - 869247 + r 70 -4.3 -4.56597 | opp_overlap 869232, overlap 869232 TAGTAAGTCATGGAA AGCCGGT GCA ATCGGCG TTTTTACAGCACGGA Avi_1024 869725 - 869273 - | hypothetical protein TERM 967 869679 - 869667 - G 81 -9.1 -4.38712 | opp_overlap 869671 869674 869675, overlap 869668 869671 GCCATGGCCATAAAA CGACC GCT GGTCG CCCAGCGTCCCTTTC pdxH 869788 - 870408 + | pyridoxamine 5'-phosphate oxidase Avi_1027 871486 - 870437 - | hypothetical protein TERM 968 870700 - 870678 - G 75 -10.6 -3.64103 | opp_overlap 870677 870676 TAGGGATAGGCGAAA CTGACCGG TCGCGTT CCGGTCAG GGTTTCGAGATAATC TERM 969 871206 - 871193 - G 78 -9.5 -3.95424 | opp_overlap 871193 ATCATCAAGAGTAAA GGCCG CAAA CGGCC TTTGACCTGGCCCTG Avi_1028 873186 - 871732 - | MFS permease TERM 970 872526 - 872538 + g 89 -6.2 -5.16472 | opp_overlap 872525, overlap 872507 CTATCGGCAAGCCAC CCGG ATTGG CCGG TTTTTTGCCATTTTT TERM 971 873258 - 873241 - H 72 -9.9 -3.32963 | ATCGCCACGCTACAA CCTCAAC CTAA GTTGAGG TAAAGAGGAAAAATG soxR 873271 - 873756 + | redox-sensitive transcriptional activator SoxR TERM 972 875114 - 875094 - g 71 -12.5 -2.52623 | overlap 875091 875093 GGTCCGCGACAAGAT CGGTGGGCC GCT GGCCGACCG CGATATCTATACCGA Avi_1030 873937 - 875265 + | D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) TERM 973 875309 - 875337 + F 100 -15.4 -3.14587 | overlap 875307 875304 CTATCCATATCCTTC GTGCCGTCTATC TCATC GATAGGCGGCAC TCTCGTTTTCTAGCC Avi_1032 875528 - 875857 + | hypothetical protein Avi_1033 876698 - 875934 - | FirrV-1-B8 Avi_1034 877516 - 876863 - | hydrolase Avi_1035 877954 - 877523 - | hypothetical protein tldD 879369 - 877954 - | TldD ialB 880191 - 879463 - | invasion associated locus B TERM 974 880448 - 880436 - H 95 -9.1 -4.77036 | overlap 880438 TGGGATGAGCAAAAA TGCCG CAG CGGCA TGGACGTACGGTTGT coxB 880584 - 881522 + | cytochrome c oxidase subunit II TERM 975 882478 - 882466 - g 78 -6.2 -4.57073 | opp_overlap 882466 GACCTTCTCGAAAAA GCCG GTTTT CGGC TATCTCGGCATGGCC ctaD 881537 - 883216 + | cytochrome c oxidase subunit I TERM 976 883268 - 883228 - f 100 -2.3 -5.77988 | overlap 883229 883230 883236 883249 ATAGACATAAAAAAA GCCATCAACGCCGTGGATG AAG CCGCTGCGGCGTTGAGAAC ATGACAGGTCAGGAC TERM 977 883354 - 883374 + G 95 -13.3 -4.07568 | overlap 883368 GTCTGTCCGAAGCGG GCGCGAAGG ATT TCTTCGCGC TTTTAAAGCCGCGGG cyoE 883269 - 884246 + | protoheme IX farnesyltransferase Avi_1043 884246 - 884383 + | hypothetical protein TERM 978 884564 - 884590 + G 75 -4.2 -4.75174 | CAAGCGGGAGAGCGG CGCGGCAAGGGC AAG GACCTGACCGTG TTTTTCGCTTGCCTG coxG 884528 - 885145 + | cytochrome C oxidase assembly protein TERM 979 886056 - 886099 + G 77 -7.8 -4.35524 | gap 3, opp_overlap 886077 886078, overlap 886059 886089 ATCTTCCTGTTGGTC TGCCTGTTTCGGGCGCTGAAA GGCGA TTTCA-C-CCCGAAACAG-CA TTTTGGCTTTGAGGC coxC 885336 - 886214 + | cytochrome c oxidase subunit III TERM 980 886289 - 886309 + F 91 -11.8 -4.08557 | opp_overlap 886289 886288 GCTGGAATTAACAAG GGCGGCGT CAAGA GCGCCGCC TTCTTGTTTGCAACA TERM 981 886309 - 886289 - f 71 -11.1 -2.88366 | opp_overlap 886289, overlap 886288 GCTGGAATTAACAAG GGCGGCG TCAAGAG CGCCGCC TTCTTGTTTGCAACA TERM 982 886431 - 886387 - f 70 -7.1 -4.03321 | overlap 886380 AGACGAAACACGAAA CGCGAGAGTTTGTGTGGTTTA ATC TGAACCTCACAAACTCAGGAG TGAAAAGAGGATCTC Avi_1046 886453 - 886833 + | hypothetical protein TERM 983 887109 - 887121 + G 72 -4.7 -4.70659 | overlap 887110 TCCTGGCGACCTATG ACGGC GAT GCCGG TTTTTACATCTACAC TERM 984 887356 - 887392 + G 80 -2.7 -5.28176 | TCTTGATGCCATGGC CGCCAGCACCGGGATCG ATA CGGCCAAGGTTCTGCCG TTTTTTCTGGATGCA Avi_1048 886835 - 887560 + | cytochrome oxidase complex biogenesis factor transmembrane protein TERM 985 887626 - 887602 - f 100 -13 -4.13014 | TGGATATTGTCAAAA TGCTTGAACC CAATC GGTTCAAGCA TAGATGCGCAATCCA TERM 986 888057 - 888070 + G 77 -2.3 -5.1166 | overlap 888055 TCCAGGCCGCGCCGG CAGCG ATTG CCCTG TTTTTGGTTTTACTG Avi_1051 887723 - 888094 + | hypothetical protein TERM 987 888166 - 888182 + G 83 -7.9 -4.57837 | CCATTGACGATCCGG CTGTGCG GTC CGCGCGG TTTTTGCGCCGGTGT ispH 888097 - 889131 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Avi_1053 890046 - 889159 - | beta-lactamase class D TERM 988 889458 - 889468 + g 71 -6.8 -4.15044 | GAACGGGCAGCTGAT GCTG GAC CAGC TTTCTTAGGAAGGCG Avi_1054 891865 - 890102 - | hypothetical protein Avi_1055 892499 - 891897 - | hypothetical protein aatA 893768 - 892566 - | aspartate aminotransferase A TERM 989 892683 - 892694 + g 84 -7.2 -4.72272 | overlap 892669 GGCGGAGCCGTGAAC GGCG GCGA CGCC TTTTTCCTCCAGCAA Avi_1057 894364 - 893894 - | hypothetical protein TERM 990 895152 - 895137 - g 77 -11.8 -3.53012 | GGCGCTGTGGCCAAA GGCGCG CGCC CGCGCC GATGAGGTCTCTCCC thrB 894676 - 895641 + | homoserine kinase TERM 991 895911 - 895898 - g 78 -3.1 -5.06414 | gap 1 CGGCTGGAAGAAAAA CGG-CT GGA AGACCG CTGACAAGAAGCCGG TERM 992 895959 - 895934 - g 100 -13.3 -4.58283 | GAAGCCGGTGAAAAA CGGCGAGCTGT GGCA ACAGCTCGACG CCGCCAACCAGCGTC Avi_1060 895638 - 896102 + | ribonuclease H Avi_1061 896129 - 896437 + | hypothetical protein Avi_1062 897398 - 896502 - | ABC transporter substrate binding protein Avi_1063 898286 - 897414 - | ABC transporter membrane spanning protein TERM 993 897523 - 897492 - G 71 -7.2 -4.10657 | gap 1, overlap 897480 897494 GGACAGGCCGTAAAA CAGCGCCG-CGACCA GGA TGATCGTCGGCCCGG AGGCCAGTTCCAGAT Avi_1065 899080 - 898283 - | ABC transporter nucleotide binding/ATPase protein TERM 994 899338 - 899317 - R 100 -13.7 -5.64274 | opp_overlap 899316 899314 899317 GCACTCATAAAAAAA CCCGGAAGC ATGA GCCTCCGGG GTCTTTGTCTTGATG TERM 995 899317 - 899338 + r 73 -11.5 -2.82253 | opp_overlap 899317, overlap 899316 899314 GCACTCATAAAAAAA CCCGGAAGC ATGA GCCTCCGGG GTCTTTGTCTTGATG Avi_1067 899885 - 899400 - | peroxiredoxin TERM 996 899967 - 899929 - R 70 -6.7 -4.07885 | gap 1, opp_overlap 899962 CAGTCTGTTCCAAAA GCGCAGCCC-GCCAGC GGCCATTG ACTGTCAGGGCTGCAC TATAGGGCGGGTTGT Avi_1068 900837 - 899956 - | hypothetical protein TERM 997 901133 - 901167 + G 85 -11.4 -4.08394 | TTTCTCGACGGCCAT TTCCTGATCGCCATGC CCG GCATGGCGGACGGCAA TTTTACCCGCAGTGT Avi_1069 901079 - 901684 + | hypothetical protein Avi_1070 902617 - 901685 - | hypothetical protein TERM 998 901862 - 901828 - G 86 -5.7 -5.06414 | gap 1, overlap 901830 GTTCCCCAAGAAAAA TCGCGCCGATGCCGAC CCCG ATCGGCACCCGCA-GA TAGGCCTGGGATGTG Avi_1071 902767 - 903450 + | transcriptional regulator ArsR family TERM 999 903467 - 903457 - T 81 -6.8 -4.63486 | overlap 903458 903460 ATGGCGTGAAGAAAA CCAG GGC CTGG AACAGCCCCGCCCAC Avi_1072 906448 - 903491 - | hypothetical protein rimJ 907059 - 906445 - | ribosomal-protein (S5)-alanine N-acetyltransferase TERM 1000 906824 - 906814 - G 91 -4.6 -5.56264 | GCGAAACAGAAAAAA CGGC ACG GCCA GCCCACAGGCATATT TERM 1001 906940 - 906926 - G 72 -4.9 -4.63932 | opp_overlap 906911 CAGGGCTGAAGAAAA GCCCG GCTTT CGGAC CGTAGCCTGTACCAT Avi_1074 908490 - 907186 - | peptidase family M16 TERM 1002 907753 - 907733 - G 76 -3.1 -4.87665 | overlap 907734 907735 907748 TGCGAGGCATAAAAA TCGCGCGCA TGA TAAGCGCGG CCTTCGAAACCGAGC thrC 909818 - 908511 - | threonine synthase Avi_1078 910172 - 910843 + | hypothetical protein Avi_1079 910891 - 911817 + | hypothetical protein Avi_1080 912544 - 911855 - | hypothetical protein TERM 1003 913042 - 913023 - g 71 -11.4 -3.25823 | GCGCTGCTAGACGAA GCGGAGGC CGCG ACCTCCGC CTGCGATCGCGCCGA TERM 1004 913316 - 913348 + G 93 -12.6 -4.21936 | gap 1 GATTGGCCGGGCGCC CGCGCCGCGCCGCGG TGAG CCGCAGC-CGGAGCG TTTTGCGATTGTCGG Avi_1081 912699 - 913367 + | transcriptional regulator GntR family Avi_1083 913473 - 913904 + | hypothetical protein TERM 1005 915051 - 915016 - g 70 -4.1 -4.58395 | opp_overlap 915036, overlap 915017 CTGAGCTGCGAAAAA CGTCGCCAT-AGCGC CATCATCC GCGCCGATGGC-ACG CTGGTGTCCGGCACG ccrM 914089 - 915222 + | cell cycle regulated site-specific DNA-methyltransferase protein TERM 1006 915282 - 915304 + F 79 -4 -5.10767 | TCTTAATCATCGGCG CCGATGCTGA CTA TCTTCGTCGG TTTTTGTATTCAGTC TERM 1007 915369 - 915329 - f 100 -16.1 -3.73224 | opp_overlap 915336, overlap 915336 TCAGTCCCGATGAAA GTGACAATGCCCGGCACGG TTT CCGCGCCGGGCATTTTGGC CTTGCCTCAAGTACG TERM 1008 915362 - 915336 - f 100 -21.6 -3.48807 | opp_overlap 915336, overlap 915329 CGATGAAAGTGACAA TGCCCGGCACGG TTT CCGCGCCGGGCA TTTTGGCCTTGCCTC TERM 1009 915336 - 915362 + F 100 -19.4 -4.19953 | opp_overlap 915336 915329 CGATGAAAGTGACAA TGCCCGGCACGG TTT CCGCGCCGGGCA TTTTGGCCTTGCCTC TERM 1010 916534 - 916552 + G 75 -11.7 -3.29626 | GATGACGATCAGGCC GCTGCCG CCATA CGGCAGC TTGATCTCGATATTC Avi_1086 915517 - 917415 + | hypothetical protein TERM 1011 918068 - 918031 - g 79 -6.9 -4.61231 | overlap 918033 CCAGATCCTGAAAAA CATCGTCAACGGCTTCG ATGG CGAAGCCTATGACCAGG AATTGCCCGAGCGGT Avi_1087 917495 - 918103 + | hypothetical protein Avi_1088 918129 - 919829 + | hypothetical protein TERM 1012 919854 - 919879 + T 73 -11.9 -2.81464 | opp_overlap 919848 919860, overlap 919857 GAGGAAATAGGCTGG AGATCAGGGCT ATCA AGCCCTGATCG TATAATCCCTGGTAA TERM 1013 919857 - 919876 + T 76 -12.2 -2.66964 | opp_overlap 919848 919860, overlap 919854 GAAATAGGCTGGAGA TCAGGGCT ATCA AGCCCTGA TCGTATAATCCCTGG Avi_1089 920141 - 919866 - | hypothetical protein TERM 1014 920009 - 919990 - G 87 -7 -5.00196 | overlap 919991 TCCGAAACAAGAAAA CGCCCGGC GACA GTCGGGCA GGCTTCGACGTTGAA Avi_1090 920749 - 920141 - | hydrolase mutY 921919 - 920753 - | A/G-specific adenine glycosylase TERM 1015 921133 - 921155 + g 81 -12 -3.69283 | opp_overlap 921129 921128 921139, overlap 921135 GAGCGATGAAGGCGG CACCAAGCCG CAC CGGCTTGGTC TTCTTCGCTGCCTTG TERM 1016 921135 - 921153 + g 87 -14.6 -3.42256 | opp_overlap 921129 921128 921139, overlap 921133 GCGATGAAGGCGGCA CCAAGCCG CAC CGGCTTGG TCTTCTTCGCTGCCT TERM 1017 922209 - 922186 - g 78 -14.6 -2.62616 | overlap 922199 CTATGCCGGACAGGA TTCGGGCCAG AAAT CCGGCCCGAA GTCGAGTGCGCCTGC TERM 1018 922320 - 922333 + G 75 -5.2 -4.64766 | AGGGCGAGTTGATTG CCCG CATCAA CGGG TTTTTCGGCTATCCG Avi_1091 921992 - 922540 + | hypothetical protein Avi_1093 922739 - 923422 + | hypothetical protein TERM 1019 923469 - 923443 - f 70 -10.1 -3.14602 | gap 1, opp_overlap 923443, overlap 923441 CGCATCCGATCAAGA CGGGCG-GTGGC GAAA GCCATGCGCCCG TTTTTTTGTGGTCGG TERM 1020 923443 - 923469 + F 100 -12.3 -5.67063 | gap 1, opp_overlap 923443 923441 CGCATCCGATCAAGA CGGGCG-GTGGC GAAA GCCATGCGCCCG TTTTTTTGTGGTCGG TERM 1021 925277 - 925257 - g 74 -8.2 -4.13304 | opp_overlap 925264 925265, overlap 925258 AAACCATTGCCAAAA TGCTGGCC TCTTC GGCCAGCG CCGGAGAATTTTCGC TERM 1022 925276 - 925258 - g 73 -11.7 -3.07259 | opp_overlap 925264 925265, overlap 925257 AACCATTGCCAAAAT GCTGGCC TCTTC GGCCAGC GCCGGAGAATTTTCG TERM 1023 925571 - 925557 - g 71 -7 -4.14511 | AACCGGATCTGAAAA CCGGCC AGC GGCTGG TGACGCGCGAAGGGG smc 923756 - 927217 + | chromosome segregation protein Avi_1096 927239 - 927580 + | hypothetical protein Avi_1098 927668 - 928084 + | hypothetical protein TERM 1024 928389 - 928410 + G 77 -2.2 -5.1286 | gap 1, overlap 928390 928392 CTGTCGACAACATCG CGA-CCGGG CTCGT CCCGGATCA TTTTTCTGGTTTTTC TERM 1025 928507 - 928523 + G 70 -5 -4.49377 | overlap 928509 TCTTCGGGCTGACAC CCGCCC AGATG GGGCTG TTCTTTTCTTCTGCC Avi_1099 928359 - 929621 + | MFS permease Avi_1100 930392 - 929673 - | hypothetical protein TERM 1026 929741 - 929714 - G 78 -14.1 -2.63112 | opp_overlap 929711 929709 929708 AAACGCCCCAGACCA GGCCCTGCCGG ACAAAG CCGGAAGGGCC ACCTCGTTCTACCGA Avi_1101 930913 - 930410 - | hypothetical protein TERM 1027 931022 - 931042 + H 70 -9.8 -3.17763 | opp_overlap 931022 AATTGGTTGAGCCAA TTTGCGAC ATTCC GTCGCAAA TTCGTGAAATATCAA TERM 1028 931042 - 931022 - H 72 -10.5 -3.05715 | opp_overlap 931022 AATTGGTTGAGCCAA TTTGCGACA TTC CGTCGCAAA TTCGTGAAATATCAA TERM 1029 932608 - 932618 + G 71 -6.8 -4.18018 | CATCGAGCCGGCGTC GCTG GAC CAGC TTTTGCATCCCACCA ppdK 931448 - 934132 + | phosphate dikinase Avi_1104 934298 - 935749 + | hypothetical protein TERM 1030 936057 - 936074 + G 74 -8.3 -4.19624 | overlap 936041 936059 CGCGCCAGTGCGCTT CTGGCCG GTTT CGGCCTG TTTCTGTTGGCCGTG TERM 1031 936059 - 936072 + G 72 -9.5 -3.6944 | overlap 936041 936057 CGCCAGTGCGCTTCT GGCCG GTTT CGGCC TGTTTCTGTTGGCCG Avi_1105 935847 - 936890 + | hypothetical protein Avi_1106 937817 - 936897 - | transcriptional regulator LysR family TERM 1032 938017 - 938047 + G 76 -3.3 -4.89838 | gap 1, opp_overlap 937991 938017, overlap 938012 CCAATGTGACCAATA TCGATGTC-TGCCA ACAG TTGCATGACTTCGA TTTTGTGTTTCTTGA Avi_1108 937962 - 938720 + | hypothetical protein TERM 1033 938762 - 938722 - f 72 -6 -4.41348 | gap 1, opp_overlap 938731, overlap 938723 938726 TCCGCCGCAAATAAA TGCAGATGTCAGCCGCGCG GAAC CGCGCGGCTGTTGTCGG-A TCCGGAGCCCACATA TERM 1034 938759 - 938726 - f 77 -12.3 -2.80589 | opp_overlap 938731, overlap 938722 938723 CCGCAAATAAATGCA GATGTCAGCCGCGCG GAAC CGCGCGGCTGTTGTC GGATCCGGAGCCCAC TERM 1035 938731 - 938754 + F 100 -19.6 -3.32844 | opp_overlap 938726 938722 938723 AATAAATGCAGATGT CAGCCGCGCG GAAC CGCGCGGCTG TTGTCGGATCCGGAG rhtB 938781 - 939410 + | RhtB family transporter Avi_1112 939407 - 940078 + | chain B structure of phosphate complex of Thrh TERM 1036 940112 - 940155 + T 100 -25.6 -4.24948 | opp_overlap 940122 ATCATGCTAGAGTTT CCTTACAGCACCGTGCGTTT TATA AAACGCACGGTGCTGTAACG TTTTAAATCTGCTGC TERM 1037 940145 - 940122 - T 95 -15.4 -2.62263 | opp_overlap 940112 AGTTTCCTTACAGCA CCGTGCGTTT TATA AAACGCACGG TGCTGTAACGTTTTA TERM 1038 940214 - 940163 - T 100 -22 -3.57561 | opp_overlap 940175, overlap 940164 CTGTAACGTTTTAAA TCTGCTGCATAATTCCTTAAATCG ACTC CGATTTAAGGAATTATGCATCAGC GTCACCGCTCCCGGA TERM 1039 940213 - 940164 - T 100 -25.5 -2.74322 | opp_overlap 940175, overlap 940163 TGTAACGTTTTAAAT CTGCTGCATAATTCCTTAAATCG ACTC CGATTTAAGGAATTATGCATCAG CGTCACCGCTCCCGG TERM 1040 940175 - 940202 + T 100 -14.4 -3.35996 | opp_overlap 940164 940163 AAATCTGCTGCATAA TTCCTTAAATCG ACTC CGATTTAAGGAA TTATGCATCAGCGTC rspE 941604 - 940216 - | ABC transporter membrane spanning protein (bacteriocin) TERM 1041 941355 - 941323 - G 75 -11.9 -3.21099 | opp_overlap 941336 CTCCTTGACCAGCAA GTCCTGCACGATGCC ACC GGCCTGGTGCTGGAC CACCTGACGGTTGGT prsD 943411 - 941615 - | rhiziobicin secretion TERM 1042 942745 - 942706 - G 90 -16.5 -3.19026 | gap 2, opp_overlap 942723 CATCCGAATAGGCAA TGCTGGC-GGCGA-GCGCC GTGT GGCGCGTCGCCTGCCAGCG GGTCGCCGCACTCTT TERM 1043 943027 - 942991 - G 78 -6.6 -4.67234 | ATGGAATGTCAAAAA CCGCAAAAATCGCCGA GGACG CCAGCATTTTTTGCAG GGCGTCCAGATCGCG TERM 1044 943552 - 943541 - H 85 -3 -5.3236 | ATAATGCAGAAAAAA CATA TTAT TATG ACGACAGTTGGTAAC TERM 1045 943648 - 943671 + H 81 -12.6 -3.1916 | overlap 943639 CAATTCCCTCCACCA TGCAGGATTT AAAA AAATCCTGCA TATTACAATTTTTTC Avi_1115 944270 - 944686 + | hypothetical protein TERM 1046 944782 - 944806 + F 100 -14.3 -5.14563 | opp_overlap 944782 ACGAAGATGGATGAA GGCGAGGTTGT CAG GCGACCTCGCC TTTTTTGGTGGGGGC TERM 1047 944806 - 944782 - f 77 -11.4 -3.22448 | opp_overlap 944782 ACGAAGATGGATGAA GGCGAGGTTG TCAGG CGACCTCGCC TTTTTTGGTGGGGGC TERM 1048 945085 - 945071 - f 83 -10 -4.1196 | AATCTATCGTTAAAA CACCCA TGA TGGGTG GCCTGTCGCACTCTT TERM 1049 945186 - 945196 + F 74 -3.2 -5.02074 | AGTTTTAAGAGGCGA GGCA TAA TGTC TTTTTTAGCCAATGC mcpA 945192 - 947165 + | methyl-accepting chemotaxis protein TERM 1050 947282 - 947248 - f 73 -11.4 -2.77899 | opp_overlap 947236 947253, overlap 947250 947253 CCTTGTTATCAAGGA TATTACGCCGGGAAGC CTT GCTTTCCGGCGTTTTA GTTTGGCCGACATTT TERM 1051 947277 - 947253 - f 95 -15.7 -2.70936 | opp_overlap 947236 947253, overlap 947250 947248 TTATCAAGGATATTA CGCCGGGAAGC CTT GCTTTCCGGCG TTTTAGTTTGGCCGA TERM 1052 947253 - 947277 + F 100 -17.9 -4.54727 | opp_overlap 947253 947250 947248, overlap 947236 TTATCAAGGATATTA CGCCGGGAAGC CTT GCTTTCCGGCG TTTTAGTTTGGCCGA cysH 947609 - 948358 + | phosphoadenosine phosphosulfate reductase cysD 948522 - 949472 + | sulfate adenylate transferase subunit 2 TERM 1053 950616 - 950603 - g 78 -9.5 -4.08767 | GCTACTGGCTGAAAA GCGGC TCGC GCCGC CAGCGCGTCCAGGTC cysN 949474 - 951012 + | sulfate adenylate transferase subunit 1 TERM 1054 951081 - 951054 - T 100 -20 -3.20901 | opp_overlap 951054 ACCCGATGAATTGAA GCCGTCATGCGT TTCA ACGCATGACGGC TTTTGTTTTTGGTTC TERM 1055 951054 - 951081 + T 100 -20 -5.34655 | opp_overlap 951054 ACCCGATGAATTGAA GCCGTCATGCGT TTCA ACGCATGACGGC TTTTGTTTTTGGTTC TERM 1056 951180 - 951144 - T 89 -13.7 -3.25942 | opp_overlap 951148, overlap 951146 951147 ATTTCGCGATACGAA TATGTGATCGGGGCCGA AGG CCGGCCCCGATCATTCA TTCCCTAAAATAGGT TERM 1057 951178 - 951146 - T 89 -14.1 -3.19602 | opp_overlap 951148, overlap 951144 951147 TTCGCGATACGAATA TGTGATCGGGGCCGA AGG CCGGCCCCGATCATT CATTCCCTAAAATAG TERM 1058 951177 - 951147 - T 100 -17.6 -2.51547 | opp_overlap 951148, overlap 951146 951144 TCGCGATACGAATAT GTGATCGGGGCCGA AGG CCGGCCCCGATCAT TCATTCCCTAAAATA TERM 1059 951148 - 951176 + T 100 -20.4 -3.37522 | opp_overlap 951147 951146 951144 CGCGATACGAATATG TGATCGGGGCCG AAGGC CGGCCCCGATCA TTCATTCCCTAAAAT Avi_1123 952174 - 951185 - | amidohydrolase TERM 1060 951849 - 951861 + g 70 -4.8 -4.46112 | overlap 951854 TCGAAGCGGGTCCAA TCGG AAGGG CCGA TTTCTTTCGGTCCGA cytR 953571 - 952540 - | transcriptional repressor LacI family TERM 1061 954314 - 954332 + H 75 -4.4 -4.78764 | opp_overlap 954306, overlap 954315 TTGAAAACTGACACT GCCAGGTC ATC GACCGGGG TTTTTGATGCCTTTG TERM 1062 954476 - 954503 + G 100 -9 -4.88736 | TCGTCCCGTTTCAAT CGCCGCCCGCTG GGCC TGGCGGCTGGCG TTTTTGTCCCTGCTG TERM 1063 954702 - 954714 + G 75 -10.5 -3.68351 | CGGGCGTTGGTCATT GCGGC TCT GCCGC TTTCGGTGCTGGGGC TERM 1064 955103 - 955051 - g 71 -7.7 -4.03234 | gap 3 TCTCCGGGACACAAA CCGGGCCTGCACCCGT-G-C-CGGTG CCAA CCCCGCGTCCACAGCCGCAGGCCCAG GATCTTATTCCCGAT Avi_1126 954444 - 955343 + | hypothetical protein Avi_1127 956241 - 955384 - | metallo-beta-lactamase superfamily protein TERM 1065 955965 - 955990 + g 71 -10.3 -3.54424 | opp_overlap 955930 GCAAGGGGCGCGCCA GCCGGTGTCGG CCCT CCGCCACCAGC TTTGCGCCGGTCAGG Avi_1128 956660 - 956364 - | hypothetical protein TERM 1066 956776 - 956752 - R 100 -10.8 -4.65263 | gap 1, opp_overlap 956749 956748 956752 ACGCGCCAAAAGAAA GCACCCCGTTC CAGG GAA-GGGGTGC TCCATTTTTCAGATG TERM 1067 956752 - 956776 + r 78 -12.1 -2.84617 | opp_overlap 956752, overlap 956749 956748 ACGCGCCAAAAGAAA GCACCCCGTTC CAG GGAAGGGGTGC TCCATTTTTCAGATG pfpI 957362 - 956802 - | proteinase TERM 1068 957742 - 957754 + H 70 -6.9 -4.07568 | opp_overlap 957750 TTTTGCTGGACGAAC GCCTG AAA CGGGC TTTTGAAAGCCCGCC TERM 1069 957767 - 957750 - H 85 -11.3 -3.58037 | opp_overlap 957742 GACGAACGCCTGAAA CGGGCTT TTGA AAGCCCG CCCTCTCAAAAAATA Avi_1133 958086 - 958952 + | hypothetical protein Avi_1135 959390 - 958980 - | hypothetical protein Avi_1136 960829 - 959381 - | hypothetical protein TERM 1070 959441 - 959451 + g 72 -4.6 -4.60977 | overlap 959448 CTGACCCAGGGATTT GCTG CTG CGGC TTTTGTCGTTGTCTT fla 961465 - 962430 + | flagellin Avi_1139 963756 - 962434 - | chloride channel protein TERM 1071 962553 - 962597 + g 84 -13 -3.69323 | gap 1 TCGCATAGCCCAGCA TGGCTG-CGGTCATGATGGCG ATGG CGCTATCATGGCTGGCGGTCA TTTCCATGATGATCA TERM 1072 962845 - 962815 - G 90 -8.3 -5.00616 | gap 2, opp_overlap 962824 962842, overlap 962817 CTTTTGCGCAAAAAA CAGCAGCGGCAGGGC CTG GCCCT-CCACCGC-G CCGCGCGCCTGTTCA TERM 1073 962844 - 962817 - G 90 -12 -4.13561 | gap 1, opp_overlap 962824 962842, overlap 962815 TTTGCGCAAAAAACA GCAGCGGCAGGGC CTG GCCCT-CCACCGC GCCGCGCGCCTGTTC TERM 1074 963462 - 963445 - G 79 -12.7 -3.2794 | overlap 963395 CCGCATTGACAGCAA CCGGCTG CGCC CAGCCGG ATCATCGATATGACG Avi_1140 964066 - 965355 + | hypothetical protein Avi_1141 965428 - 965640 + | hypothetical protein Avi_1142 965634 - 965999 + | nucleic acid-binding protein betA 967659 - 966004 - | choline dehydrogenase TERM 1075 967814 - 967793 - g 83 -5.8 -4.91511 | ACCGGATGACAAAAA GCATTCGC TTGAGC GCGATTGC CGTGATTGCTACGGC Avi_1146 967743 - 968084 + | hypothetical protein betB 969558 - 968092 - | betaine aldehyde dehydrogenase Avi_1148 970196 - 969555 - | Glutathione S-transferase protein betC 971689 - 970199 - | choline sulfatase Avi_1151 972261 - 971713 - | transcriptional regulator TetR family Avi_1154 972549 - 974360 + | hypothetical protein qor 975478 - 976647 + | quinone oxidoreductase Avi_1157 976771 - 977142 + | transposase TERM 1076 977482 - 977514 + G 78 -11.3 -3.6608 | opp_overlap 977480 AAGACCCATTGAACT TTCTCGCCGCTGTCA AAT TGGCAGCAGCAAGAA TTTGGATCAGATCGT Avi_1158 977118 - 977534 + | transposase mcpA 977756 - 979771 + | methyl-accepting chemotaxis protein TERM 1077 979991 - 980014 + F 79 -12.4 -3.08679 | CTGATCCCATCTTCC TTCGGCGGCA GCTG TGCCGCCGGG TCTTCAGTCAGGCCA TERM 1078 980069 - 980086 + F 100 -10.5 -4.88228 | opp_overlap 980069 AAGGCCAGGAGGAAA GGGTCGC GAAA GCGGCCC TTTTTGCTGTTCCGT TERM 1079 980086 - 980069 - f 72 -8.3 -3.79519 | opp_overlap 980069 AAGGCCAGGAGGAAA GGGTCGC GAAA GCGGCCC TTTTTGCTGTTCCGT TERM 1080 980929 - 980939 + G 83 -8.2 -4.57073 | ATGATGAGCGTGAGG CGGC AAA GCCG TTTTTCGGAGCGCTC TERM 1081 981779 - 981791 + G 70 -4.8 -4.41348 | GTCGGCAACCGATCT GGTG CTCGA CACC TTTATTTACAACGGC Avi_1160 980307 - 982199 + | hypothetical protein Avi_1161 982186 - 984099 + | hypothetical protein Avi_1162 984228 - 986129 + | hypothetical protein Avi_1163 986234 - 987241 + | hypothetical protein Avi_1164 988027 - 987272 - | transcriptional regulator DeoR family Avi_1165 988099 - 988500 + | hypothetical protein TERM 1082 988569 - 988542 - T 76 -11.2 -3.40191 | opp_overlap 988548 CGTAGAACAGACGAA CCGAAGCCGGGC ATTT GCCCGGTTTTGG CCGGTGATCATAAAG TERM 1083 988548 - 988563 + T 91 -11.8 -4.10161 | opp_overlap 988542 ACAGACGAACCGAAG CCGGGC ATTT GCCCGG TTTTGGCCGGTGATC TERM 1084 989130 - 989081 - T 74 -10.1 -3.53012 | gap 1, opp_overlap 989089, overlap 989082 989089 989106 CTTGCCCTCGCCAAA GTACGTAAGCTCTGGCCACCGGAA ATC TGCCGAGAGCCAGAGCTTA-GTAG CATCACATCGGCGGC TERM 1085 989129 - 989082 - T 85 -13.6 -2.71712 | gap 1, opp_overlap 989089, overlap 989081 989089 989106 TTGCCCTCGCCAAAG TACGTAAGCTCTGGCCACCGGAA ATC TGCCGAGAGCCAGAGCTTA-GTA GCATCACATCGGCGG TERM 1086 989123 - 989089 - T 81 -12.8 -3.1634 | opp_overlap 989089, overlap 989082 989081 989106 CGCCAAAGTACGTAA GCTCTGGCCACCGGAA ATC TGCCGAGAGCCAGAGC TTAGTAGCATCACAT Avi_1166 989762 - 989133 - | hypothetical protein TERM 1087 989190 - 989201 + g 79 -7.2 -4.62471 | GCTTGAGGCGATTGT GCCG TCCT CGGC TTTTTCGGCATTGAC Avi_1167 991547 - 989874 - | hypothetical protein Avi_1168 992251 - 991751 - | hypothetical protein TERM 1088 991925 - 991948 + g 74 -8.1 -4.19704 | ATAGGTGGGCAGGGC GGCCATGGC TGCCGT GCCATAGCC TTTTCCCTGAAATTG TERM 1089 992042 - 992031 - G 74 -7.2 -4.27316 | opp_overlap 992031 992030 TCCGCCAAGTCAAAA CCGG TAAG CCGG GTATTATAGTCCCTG gst 992908 - 992255 - | glutathione S-transferase TERM 1090 993119 - 993084 - H 100 -19.4 -3.33162 | opp_overlap 993084 CATCCTACTGCATAA TTTTCTCTTTAAACCG GAAT CGGTTTAAAGAGAAAA TTATGCAGTAGGTAT TERM 1091 993084 - 993119 + H 100 -19.4 -3.33671 | opp_overlap 993084 CATCCTACTGCATAA TTTTCTCTTTAAACCG GAAT CGGTTTAAAGAGAAAA TTATGCAGTAGGTAT TERM 1092 993205 - 993249 + H 75 -11.4 -2.87564 | gap 1 CACGGCACGCTTTAT TGCGCCCGCTGGCAGGACGGT GGTT ACCGGCATGGCA-TGGGCGCA TCTATCGAAGGATAA TERM 1093 993772 - 993753 - g 88 -15 -3.53091 | opp_overlap 993748 ACCGGCGGGTGGAAA GGCGTCCG CCGC CGGACGCC CTGGCCTTGATCGGC Avi_1172 993269 - 993793 + | hypothetical protein TERM 1094 993792 - 993850 + T 91 -9.6 -4.68919 | opp_overlap 993827, overlap 993795 993800 993801 CCTTGATCGGCCTGT GACGGCGGCCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGATTCTCTTG TTTTCGTTTGTCTTT TERM 1095 993795 - 993847 + T 100 -15.7 -4.40882 | opp_overlap 993827, overlap 993792 993800 993801 TGATCGGCCTGTGAC GGCGGCCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGATTCTC TTGTTTTCGTTTGTC TERM 1096 993800 - 993842 + T 100 -20.8 -3.97437 | opp_overlap 993827, overlap 993795 993792 993801 GGCCTGTGACGGCGG CCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGA TTCTCTTGTTTTCGT TERM 1097 993801 - 993841 + T 100 -24.3 -2.96836 | opp_overlap 993827, overlap 993800 993795 993792 GCCTGTGACGGCGGC CTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAG ATTCTCTTGTTTTCG ggt 995698 - 993932 - | gamma-glutamyltransferase TERM 1098 994051 - 994073 + g 73 -12.6 -2.71364 | opp_overlap 994046 994045 CGACCAGAATGCCAG CGGCCTGGCC CCA GACCGGGCCG TCATTGCCGCCATCC Avi_1175 996409 - 995951 - | transcriptional regulator MarR family TERM 1099 996764 - 996780 + G 78 -11.5 -3.67296 | opp_overlap 996764, overlap 996776 CCGCCGCTCCCAAGA CGGTGGC GCC GCCGCCG TTTCAGTCGCTGGTC TERM 1100 997424 - 997444 + G 77 -7.6 -4.28774 | gap 1 TGACCAGCGTGGTGT TCTGGGCCG ATAG CGGC-CAGA TTTTCGGTTCACTGG TERM 1101 997712 - 997730 + G 73 -12.4 -3.17075 | overlap 997724 997725 997727 TGTTCATTGCGGTCA CCGGTGGC ATC GCCATCGG TTCGCTTAGCAGCGG Avi_1177 996724 - 998286 + | MFS permease TERM 1102 998349 - 998301 - f 72 -10.3 -3.28791 | opp_overlap 998301, overlap 998302 ATTTGCCCGGTATAA GGGTGCTATGCTACCACAGAGCA AAG CACTCTTTGGTAGCATAGCGAGC ATGGCCCCGGTACAC TERM 1103 998349 - 998302 - f 76 -12.2 -2.57132 | gap 1, opp_overlap 998301, overlap 998301 TTTGCCCGGTATAAG GGT-GCTATGCTACCACAGAGCA AAG CACTCTTTGGTAGCATAGCGAGC ATGGCCCCGGTACAC TERM 1104 998446 - 998460 + G 72 -8.5 -3.86897 | GAGGAGCCTTTTACC GCCCG TGATC CGGGC TTTCTGGGCGATGAG TERM 1105 999132 - 999156 + G 75 -4.2 -4.86001 | overlap 999123 CCCTTGCCTCGTCTC CAGGTTTGGC AAACC GTCCAGCCTG TTTTTGTACGCTGGT Avi_1178 998308 - 999375 + | hypothetical protein Avi_1179 1000036 - 999404 - | nitroreductase TERM 1106 999917 - 999905 - G 78 -9.1 -4.24963 | GACAAGCACGGAAAA CGGCT GCA AGCCG CTGGAGGTCGGTGCC TERM 1107 1000123 - 1000095 - R 90 -7.3 -5.06414 | overlap 1000096 1000097 CGCCTGGAAGAAAAA TTGCCTGCCCG ATGTAGG CGGGCAGGCGG TCATCCGCAACGGGC TERM 1108 1000122 - 1000096 - R 81 -10.8 -3.63367 | overlap 1000095 1000097 GCCTGGAAGAAAAAT TGCCTGCCCG ATGTAGG CGGGCAGGCG GTCATCCGCAACGGG TERM 1109 1000121 - 1000097 - R 85 -14.3 -2.77538 | overlap 1000096 1000095 CCTGGAAGAAAAATT GCCTGCCCG ATGTAGG CGGGCAGGC GGTCATCCGCAACGG Avi_1180 1001092 - 1000202 - | hypothetical protein TERM 1110 1000648 - 1000662 + g 72 -5.6 -4.42238 | overlap 1000650 TCAGCCGGTAATTGG CGCTGG CCT CCAGGG TTTTGGTTGAAATCG TERM 1111 1001242 - 1001258 + r 77 -11.5 -3.18383 | overlap 1001246 GTGGTGGCCGGAGAC GGCGCGG CCT CTGCGCC TTGATCCGTGGCCGT Avi_1183 1002456 - 1001875 - | hypothetical protein TERM 1112 1002516 - 1002489 - R 76 -4 -5.00138 | gap 1, overlap 1002490 1002491 CATGGAAATGAAAAA CCCCGA-CGCCGC AAT GCGGCGCTCGATC AGGCGGCTGTGGATT TERM 1113 1002514 - 1002491 - R 70 -11 -2.74314 | gap 1, overlap 1002490 1002489 TGGAAATGAAAAACC CCGA-CGCCGC AAT GCGGCGCTCGA TCAGGCGGCTGTGGA Avi_1184 1003069 - 1002515 - | hypothetical protein Avi_1186 1003348 - 1004112 + | hypothetical protein TERM 1114 1004452 - 1004416 - g 73 -12.1 -3.13403 | overlap 1004414 TCCGGTGTATGAACA GGGGTCGCTGGGCGGCA TGG TGCAGCCCACGGGCCCC ATGGCCCCATCCACG Avi_1187 1004264 - 1005019 + | hypothetical protein TERM 1115 1005017 - 1005075 + T 100 -15.4 -4.68919 | opp_overlap 1005026 1005027, overlap 1005020 1005026 1005029 ATCATCGTCCTGCAA TAGGGATAACGAGAGTCTGTCGGGTTCA GAT TGAGCCGGACAGACTCTCAATTTCCTTG TTTTCCTTTGTCTTT TERM 1116 1005020 - 1005072 + T 100 -17.1 -4.40882 | opp_overlap 1005026 1005027, overlap 1005017 1005026 1005029 ATCGTCCTGCAATAG GGATAACGAGAGTCTGTCGGGTTCA GAT TGAGCCGGACAGACTCTCAATTTCC TTGTTTTCCTTTGTC TERM 1117 1005066 - 1005026 - T 100 -17.7 -3.42503 | opp_overlap 1005020 1005017 1005026 1005029, overlap 1005027 CTGCAATAGGGATAA CGAGAGTCTGTCGGGTTCA GAT TGAGCCGGACAGACTCTCA ATTTCCTTGTTTTCC TERM 1118 1005026 - 1005066 + T 100 -17.7 -3.11416 | opp_overlap 1005026 1005027, overlap 1005020 1005017 1005029 CTGCAATAGGGATAA CGAGAGTCTGTCGGGTTCA GAT TGAGCCGGACAGACTCTCA ATTTCCTTGTTTTCC TERM 1119 1005065 - 1005027 - T 100 -19 -2.6518 | opp_overlap 1005026 1005020 1005017 1005029, overlap 1005026 TGCAATAGGGATAAC GAGAGTCTGTCGGGTTCA GAT TGAGCCGGACAGACTCTC AATTTCCTTGTTTTC TERM 1120 1005029 - 1005063 + T 100 -18 -2.7411 | opp_overlap 1005027 1005026, overlap 1005026 1005020 1005017 CAATAGGGATAACGA GAGTCTGTCGGGTTCA GAT TGAGCCGGACAGACTC TCAATTTCCTTGTTT Avi_1189 1005590 - 1005114 - | transcriptional regulator MarR family TERM 1121 1005644 - 1005629 - H 79 -2.6 -5.31456 | GCAATGTACAAAAAA CAATTG CGTA CAATTA AATTGCGTGATACCA Avi_1190 1005742 - 1006164 + | organic hydroperoxide resistance protein TERM 1122 1006182 - 1006218 + T 100 -16 -3.53224 | gap 1, opp_overlap 1006182 1006189, overlap 1006184 1006189 CTGGGGTTAAGGATA TG-CGAAAGGCCGGTCT GGCG GGACCGGCCTTTCGTCG TTTGGGGGAGGGGTA TERM 1123 1006217 - 1006182 - T 82 -13.3 -2.90075 | opp_overlap 1006182 1006184 1006189, overlap 1006189 CTGGGGTTAAGGATA TGCGAAAGGCCGGTC TGGCGG GACCGGCCTTTCGTC GTTTGGGGGAGGGGT TERM 1124 1006184 - 1006215 + T 100 -21 -2.90496 | opp_overlap 1006182 1006189, overlap 1006182 1006189 GGGGTTAAGGATATG CGAAAGGCCGGTCT GGCG GGACCGGCCTTTCG TCGTTTGGGGGAGGG TERM 1125 1006210 - 1006189 - T 93 -13 -3.65313 | opp_overlap 1006184 1006182 1006189, overlap 1006182 TAAGGATATGCGAAA GGCCGGTC TGGCGG GACCGGCC TTTCGTCGTTTGGGG TERM 1126 1006189 - 1006210 + T 100 -13.7 -3.8901 | opp_overlap 1006189 1006182, overlap 1006184 1006182 TAAGGATATGCGAAA GGCCGGTCT GGCG GGACCGGCC TTTCGTCGTTTGGGG setA 1007733 - 1006396 - | MFS permease TERM 1127 1007948 - 1007961 + G 80 -9.5 -4.25104 | GCTCCGCAAGTCTTC GGCCC TAGA GGGCC TTTTCATGCCAAAGA TERM 1128 1008029 - 1008041 + G 74 -7.7 -4.14627 | CGTGGTGGTGTCTTC CAACG AAC CGTTG TTGTTTCTGTCGGAC Avi_1193 1007844 - 1009019 + | sensory transduction regulatory protein Avi_1195 1009190 - 1009582 + | Two component sensor kinase/response regulator hybrid protein Avi_1197 1010108 - 1009575 - | hypothetical protein Avi_1199 1010836 - 1010300 - | pyrE protein Avi_1200 1013188 - 1011002 - | methyl-accepting chemotaxis protein TERM 1129 1011179 - 1011203 + g 82 -14.3 -3.01712 | overlap 1011168 CTGGTCGCCAGCGGC GGTGACTTCGC GTA GCGAGGTCGCC TGTTCGCGGGCGGCG TERM 1130 1011578 - 1011592 + g 71 -12.8 -2.57132 | overlap 1011577 CCGGGCGACGATGTC GCCGCC CTT GGCGGC ATTGTCGCGGGCGGC TERM 1131 1013332 - 1013358 + r 73 -9.4 -3.56675 | opp_overlap 1013328 1013334, overlap 1013330 1013334 AAACCGCGAAAGCGA AATGCCGCCG AGTCATC CGGCGGCATC TATTTGCTTACCTTA TERM 1132 1013356 - 1013334 - R 91 -12.7 -3.84719 | opp_overlap 1013332 1013330 1013334, overlap 1013328 ACCGCGAAAGCGAAA TGCCGCCGA GTCAT CCGGCGGCA TCTATTTGCTTACCT TERM 1133 1013334 - 1013356 + r 80 -12 -3.3487 | opp_overlap 1013328 1013334, overlap 1013332 1013330 ACCGCGAAAGCGAAA TGCCGCCG AGTCATC CGGCGGCA TCTATTTGCTTACCT Avi_1201 1015583 - 1013397 - | methyl-accepting chemotaxis protein TERM 1134 1013836 - 1013812 - G 78 -9.1 -4.15565 | GCCACCACGGCAAAA CCCTTGCCGGA TTC CCCGGCGCGGG CCGCTTCCACCCCTG TERM 1135 1015319 - 1015338 + g 93 -12.8 -4.19817 | opp_overlap 1015318 GCGAGGCGATGACAT CGGCGCGG CTGC CTGCGCCG TTTTCAATCAATCCC TERM 1136 1015773 - 1015729 - R 77 -12.4 -2.71731 | opp_overlap 1015737, overlap 1015737 CCCAGCTTTGAAGGA TTTGCAAATATCTCAAACGC ATCGG GTGCTTGAGATATTTGCAAG GAGAGCATGACAGGT Avi_1202 1016183 - 1015794 - | hypothetical protein TERM 1137 1016118 - 1016100 - G 75 -5.2 -4.56597 | TTCGCGCTGCAAAAA GCCCAGCA TCA TGCCAAGC GCCTTTTCCGCCGTG Avi_1204 1016473 - 1018056 + | hypothetical protein TERM 1138 1018249 - 1018237 - f 74 -3.4 -4.88067 | ATGCAGTCACAAAAA GACA GAGTT TGTC CTGAACGATCGATGT TERM 1139 1018334 - 1018312 - f 84 -11.2 -3.71848 | opp_overlap 1018312 1018309 1018307, overlap 1018288 TCGCCCGATGAATAA GCCACCGGTC TCT AACCGGGGGC GTATATTTATGAACA TERM 1140 1018739 - 1018707 - g 81 -4.3 -5.10767 | opp_overlap 1018707 1018717 1018722 TATTTAATACAAAAA TACCAAAAATTATAT TAT ATATTATATTCGGTA TTTTTCTTGGGCCGT TERM 1141 1018707 - 1018739 + G 77 -2.1 -5.06816 | opp_overlap 1018707, overlap 1018717 1018722 TATTTAATACAAAAA TACCAAAAATTATAT TAT ATATTATATTCGGTA TTTTTCTTGGGCCGT Avi_1205 1018604 - 1019881 + | Integral membrane transporter protein pykA 1019915 - 1021318 + | pyruvate kinase Avi_1207 1021318 - 1022250 + | permease mcpC 1024090 - 1022276 - | methyl-accepting chemotaxis protein TERM 1142 1023225 - 1023257 + g 88 -11.2 -4.21936 | TGCAATTTCTTCTGT GCGGCGGCTTCGGC TTCCT GCTGAAGGCGCAGC TTTTCGGATTCTGCC TERM 1143 1024579 - 1024602 + G 80 -10.2 -4.07885 | gap 1 GTGCCAGCGCTGCTG GGCTG-GCCCG ATC CGGGCGCTGCC TTTTCAGCCGCCATG Avi_1209 1024432 - 1025304 + | undecaprenol kinase Avi_1210 1026115 - 1025330 - | ABC transporter xylH 1027446 - 1026133 - | ABC transporter membrane spanning protein (xylose) TERM 1144 1027636 - 1027684 + r 78 -8.3 -4.26344 | gap 4, overlap 1027679 CGCCGCCCCCTCATC CGGCTGCCGC-CA-C-CTTCTCCCC GCT GGGGAGAAGAGATATGTGGC-GCCG TTTTGCTCGCCATCT xylF 1028938 - 1027898 - | ABC transporter substrate binding protein (xylose) TERM 1145 1029019 - 1029050 + H 85 -7.3 -4.83615 | opp_overlap 1029025 1029048 ACTGCCTCTGTTCCC CAATCATCAGGCT CTTTCA AGCCAGACGATTG TTTTTCTCGACAGTC TERM 1146 1029255 - 1029217 - H 80 -5.2 -4.96848 | overlap 1029218 TGGGTCATAGAAAAA TCAGACCCTGCTGGTTCA GGA TGACCCAGAAGGATATGG GCGTTGCAGTGAAAC TERM 1147 1029608 - 1029636 + G 75 -8.8 -4.07687 | overlap 1029592 TCGGTCAGGATTTCC TCCGACCGGCTG AATTA CACCCTGTCGGA TTTTCGCGGCAAGCT TERM 1148 1030243 - 1030227 - g 70 -5 -4.45083 | overlap 1030228 1030229 CCGAGATGGACAAAA TCGCGC TCTCG GCGCGC CAGGGCAATCGCATG Avi_1214 1029338 - 1030540 + | transcriptional regulator TERM 1149 1030583 - 1030597 + T 78 -8.6 -4.19735 | opp_overlap 1030560 AGGTTCAGCCCCGCT TGGTCA CAC TGACCA TTTGCTTTTCAACCA Avi_1215 1030934 - 1030572 - | hypothetical protein Avi_1217 1031911 - 1031420 - | hypothetical protein TERM 1150 1032038 - 1032065 + r 91 -10.6 -4.16301 | opp_overlap 1032038 1032037 CACCAGCGAATGAAC GCGTGACAGC CCTCATTC GCTGTCGCGC TTTATATCTGCTCTA Avi_1218 1032860 - 1032105 - | ABC transporter Avi_1219 1033936 - 1032854 - | ABC transporter membrane spanning protein (iron) Avi_1220 1035084 - 1033933 - | ABC transporter substrate binding protein (iron) TERM 1151 1034666 - 1034676 + g 70 -2.4 -4.72272 | overlap 1034665 ACGACCTGAATGCCC GCCG CTG CCGC TTTTTCCTCCAGCCC TERM 1152 1034829 - 1034857 + g 70 -3.7 -4.61231 | overlap 1034830 TCTCAGGGAAGCGCT CGACATAGGCGGC GTA GCTGTCTGGGTCC TTTTTCACCATGTCA TERM 1153 1035133 - 1035106 - R 100 -14.2 -4.03413 | opp_overlap 1035104 1035103 ACCTCTTGATATAAA TTCCGGCGGC AAGTGCCA GCCGCCGGAA GCCTTTGAAAGTATT TERM 1154 1035141 - 1035192 + r 100 -14 -4.84353 | gap 1, opp_overlap 1035144 1035147, overlap 1035144 1035147 CGCCGGAAGCCTTTG AAAGTATTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGTCTCTAA-ACTTC TTTGTTTTCGTTTGT TERM 1155 1035189 - 1035144 - R 100 -15.7 -3.55622 | gap 1, opp_overlap 1035144 1035141 1035147, overlap 1035147 CGGAAGCCTTTGAAA GTATTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGTCTCTAA-AC TTCTTTGTTTTCGTT TERM 1156 1035144 - 1035189 + r 100 -15.7 -4.47163 | gap 1, opp_overlap 1035144 1035147, overlap 1035141 1035147 CGGAAGCCTTTGAAA GTATTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGTCTCTAA-AC TTCTTTGTTTTCGTT TERM 1157 1035147 - 1035187 + r 100 -18.5 -2.53888 | opp_overlap 1035144 1035147, overlap 1035144 1035141 AAGCCTTTGAAAGTA TTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGTCTCTAA ACTTCTTTGTTTTCG TERM 1158 1035187 - 1035147 - R 100 -18.5 -2.90992 | opp_overlap 1035147 1035144 1035141, overlap 1035144 AAGCCTTTGAAAGTA TTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGTCTCTAA ACTTCTTTGTTTTCG Avi_1221 1036468 - 1035248 - | ABC transporter substrate binding protein (iron) TERM 1159 1035880 - 1035908 + g 71 -7.3 -4.20106 | overlap 1035882 CCTTGCCATAGAGCT TGCCGATCAGCCG CAT CGACGGATCGGTG TTTTCCATGGCCTTT TERM 1160 1035882 - 1035906 + g 72 -9.9 -3.69483 | overlap 1035880 TTGCCATAGAGCTTG CCGATCAGCCG CAT CGACGGATCGG TGTTTTCCATGGCCT TERM 1161 1036335 - 1036311 - G 86 -15.8 -2.79183 | TTGATCTTCACCAGA TCTCCGGCGT TTGCG ACGCCGGAGA TCAGCGCGAGCGAAA Avi_1222 1036563 - 1037381 + | methyltransferase TERM 1162 1038100 - 1038075 - g 95 -13.3 -4.07568 | opp_overlap 1038067 1038078 GGCCGCTCTGGAAAA CCAGCAGGCTG GAGC CAGCTTGCTGG GCATGCAATTGTTGA Avi_1223 1037535 - 1038449 + | transcriptional regulator LysR family TERM 1163 1038486 - 1038463 - T 73 -11.8 -2.58249 | overlap 1038462 1038465 GACATGTTTTATAAG GACAGGATCA TTGC TGATCCTGCC TCTGGGCTGGGCTGA TERM 1164 1038484 - 1038465 - T 70 -10.8 -2.8294 | overlap 1038462 1038463 CATGTTTTATAAGGA CAGGATCA TTGC TGATCCTG CCTCTGGGCTGGGCT Avi_1224 1039717 - 1038470 - | MFS permease TERM 1165 1038908 - 1038882 - G 74 -7.2 -4.37658 | overlap 1038883 AATTTGCCGATAAAA GGGGCTGAAAGG GTT CCTATCAACCCA GCAAATCCGAATGCC Avi_1225 1040855 - 1039707 - | peptide synthetase TERM 1166 1041224 - 1041252 + H 100 -15.4 -3.54459 | gap 1, opp_overlap 1041229, overlap 1041229 1041231 GACAGATCACCATGT CAAC-AGGCCGCC GTCA GGCGGCCTTGTTG TTTGAACGAGCTTCC TERM 1167 1041229 - 1041246 + H 100 -14.1 -4.08557 | opp_overlap 1041229, overlap 1041224 1041231 ATCACCATGTCAACA GGCCGCC GTCA GGCGGCC TTGTTGTTTGAACGA TERM 1168 1041246 - 1041229 - H 87 -14.1 -3.07222 | opp_overlap 1041229 1041224 1041231 ATCACCATGTCAACA GGCCGCC GTCA GGCGGCC TTGTTGTTTGAACGA TERM 1169 1041231 - 1041277 + H 100 -15.9 -3.34398 | opp_overlap 1041229, overlap 1041229 1041224 CACCATGTCAACAGG CCGCCGTCAGGCGGCCTTGTT GTTTG AACGAGCTTCCCTGACGGCGG TATTTCAAGAGGGAA Avi_1227 1041338 - 1041787 + | acetyltransferase TERM 1170 1042564 - 1042579 + GF 76 -3.2 -4.89339 | opp_overlap 1042539 ATCGTTGGCTATCGA CAAGCC GACA GGCTTA TTTTTGTGCATGGTT Avi_1231 1042375 - 1042761 + | hypothetical protein Avi_1232 1042733 - 1043035 + | transcriptional regulator protein TERM 1171 1043101 - 1043119 + F 71 -2.3 -4.88736 | overlap 1043103 1043104 ATTTCTCGATTCTAA TGCCCGC TCTTT GCGGATA TTTTTGTAAATGCTC TERM 1172 1043352 - 1043318 - f 86 -13.7 -2.90496 | gap 1, opp_overlap 1043316 1043315, overlap 1043315 1043320 TCGGTCGTTAAATGA CACC-CCTCAGCCATA GGTT TGTGGCTGAGGCGGTG GGTCATGTCTATATG TERM 1173 1043349 - 1043320 - f 72 -10.7 -3.00525 | opp_overlap 1043316 1043315, overlap 1043318 1043315 GGTCGTTAAATGACA CCCCTCAGCCATA GGTT TGTGGCTGAGGCG GTGGGTCATGTCTAT TERM 1174 1043468 - 1043506 + F 83 -9.7 -4.09685 | gap 1, overlap 1043470 TGCGACTTTTCTACT C-CCCGATCACCAGAGTT TGCA AACTCTGGTGATCGCTCG TTTTCCGGCGTGGGA TERM 1175 1043470 - 1043503 + F 100 -16.9 -3.08508 | overlap 1043468 CGACTTTTCTACTCC CCGATCACCAGAGTT TGCA AACTCTGGTGATCGC TCGTTTTCCGGCGTG Avi_1233 1043532 - 1044023 + | hypothetical protein Avi_1234 1044983 - 1044069 - | hypothetical protein TERM 1176 1045035 - 1045013 - R 100 -18.4 -3.88498 | opp_overlap 1045013 TCTTTATATATCAAA CCCGCCCGGG TGG CCCGGACGGG TCTCTACATGGGATG TERM 1177 1045013 - 1045035 + r 100 -16.2 -2.91582 | opp_overlap 1045013 TCTTTATATATCAAA CCCGCCCGGG TGG CCCGGACGGG TCTCTACATGGGATG Avi_1236 1045527 - 1045054 - | cytochrome C-556 Avi_1238 1046561 - 1045701 - | hypothetical protein Avi_1239 1046666 - 1047181 + | acetyltransferase TERM 1178 1047922 - 1047951 + T 74 -2.3 -5.07053 | gap 1, opp_overlap 1047928, overlap 1047922 1047926 1047928 1047929 TGCAGGATAGCGCTG TT-AATATGCAGAA TTC TTCTGCGTGTTCGA TTTTTTGGGATGCTT TERM 1179 1048170 - 1048140 - T 100 -6.9 -5.4833 | opp_overlap 1048140 1048138 CTATTTAAGAAAAAA GGCCAAAGGAA TATGTAAAG TACCTTTGGCC TATTTATCATAAAGC TERM 1180 1048140 - 1048170 + T 73 -9 -3.57406 | opp_overlap 1048140, overlap 1048138 CTATTTAAGAAAAAA GGCCAAAGGAATAT GTA AAGTACCTTTGGCC TATTTATCATAAAGC acpD 1048814 - 1048194 - | acyl-carrier-protein phosphodiesterase Avi_1242 1048855 - 1049334 + | hypothetical protein Avi_1244 1049773 - 1049321 - | acetyltransferase protein TERM 1181 1049680 - 1049696 + g 83 -13.7 -3.50853 | overlap 1049682 CTGCCCGTTTTAACG CCTCGCC CTC GGCGAGG TTATAATTGAGGGCG TERM 1182 1049830 - 1049855 + r 100 -14 -3.8512 | gap 1, opp_overlap 1049830 CTGCTCCATGAAAAA GGCCCGGC-GC ATCAA GCTGCCGGGCC TTATTATCGTCGGTA TERM 1183 1049855 - 1049830 - R 100 -14 -4.72272 | gap 1, opp_overlap 1049830 CTGCTCCATGAAAAA GGCCCGGC-GC ATCAA GCTGCCGGGCC TTATTATCGTCGGTA sodB 1050488 - 1049886 - | superoxide dismutase TERM 1184 1050753 - 1050731 - R 74 -6.2 -4.52143 | opp_overlap 1050736, overlap 1050736 CCGAAACACAATAAA GCAAACAGGC GAA GCCTGTTATC AGTCATAGACGTCCG TERM 1185 1050748 - 1050736 - R 82 -9.1 -4.25325 | opp_overlap 1050736, overlap 1050731 ACACAATAAAGCAAA CAGGC GAA GCCTG TTATCAGTCATAGAC Avi_1247 1051105 - 1050752 - | hypothetical protein Avi_1248 1051251 - 1052051 + | hypothetical protein Avi_1249 1052222 - 1053157 + | GGDEF family protein ilvE 1054064 - 1053183 - | branched-chain-amino-acid transaminase TERM 1186 1054154 - 1054136 - H 77 -6.6 -4.52142 | AGGAGAAAATACAAA GGGCATGC AGC ACTTGCCC CCAAAAATGGCCGGT Avi_1253 1054360 - 1056537 + | Polyphenol oxidase protein TERM 1187 1056649 - 1056623 - f 76 -7.8 -4.2349 | overlap 1056625 CCCCGAGACTGAAAA TAGCGGGTGGCA GAC CGCCGCCCGCCG ATTACCCCGACCTGC TERM 1188 1056647 - 1056625 - f 91 -12.6 -3.71913 | overlap 1056623 CCGAGACTGAAAATA GCGGGTGGCA GAC CGCCGCCCGC CGATTACCCCGACCT Avi_1256 1056968 - 1057282 + | hypothetical protein TERM 1189 1057441 - 1057429 - f 84 -4.1 -5.28176 | CTTAGGTAGAAAAAA CAGAA TGC TTCCG CTATTGATGGGCCGC TERM 1190 1057449 - 1057476 + F 100 -17 -4.11371 | TGCTTCCGCTATTGA TGGGCCGCGCAA GTTT TGGCGCGGCCCA TTTTGGAGGATATTA Avi_1257 1057491 - 1057964 + | hypothetical protein TERM 1191 1057983 - 1058008 + T 100 -14.7 -3.80174 | GCCAAGTTGCATTTG CCGCTCCCTGT CTTG GCAGGGGGCGG TTCTTATCCGGATCT ptrB 1060200 - 1058071 - | protease II Avi_1259 1060423 - 1060812 + | hypothetical protein TERM 1192 1060829 - 1060846 + T 91 -11.3 -4.13014 | GAGCAACAAGCCGTG GGGTGAC GCCT GTCACCC TTTTCACCCTGTCAC TERM 1193 1060855 - 1060869 + T 70 -6.4 -4.28774 | GTCACCCTTTTCACC CTGTCA CCC TGGCAG TTTTGGCTTCGGTGC Avi_1260 1061958 - 1060858 - | hypothetical protein TERM 1194 1062389 - 1062408 + H 74 -2.8 -4.89852 | overlap 1062391 GGCATTTTGAGTCTG CATCCATG GAGA TATGGAGG TTTTTGTAACTATCC Avi_1261 1062615 - 1064393 + | xanthan lyase protein TERM 1195 1064450 - 1064467 + F 70 -6.3 -4.15044 | opp_overlap 1064450 GGCAGCACGATAGAA GCGTTTT TCCC GAAACGC TTTCTTCAAGGCAGG TERM 1196 1064980 - 1065012 + G 70 -4.6 -4.46212 | opp_overlap 1064981, overlap 1064981 GTTGCCGAGGAAGTG ACCGGCGGCGCGGA CGCCA TGCGGGCCGCAGGA TTTTCTCCTCCGCGC Avi_1263 1064557 - 1065336 + | hypothetical protein Avi_1264 1066224 - 1065340 - | hypothetical protein Avi_1265 1066481 - 1066891 + | hypothetical protein dskA 1066932 - 1067249 + | dnaK suppressor protein Avi_1267 1067654 - 1067277 - | hypothetical protein TERM 1197 1067344 - 1067358 + g 79 -7 -4.62069 | opp_overlap 1067342 ACCCAGGAAATCAGC GCGCCG GGA CCGCGC TTTTTGGCATCCGCA Avi_1271 1068026 - 1068676 + | Hemolysin III Avi_1273 1069508 - 1068777 - | cAMP-binding protein TERM 1198 1068831 - 1068855 + g 100 -7.7 -5.40072 | TATCTCGAGCTTCCT CGGCCCCTTTC GCT GGACGAGGCCG TTTTTTTCCAGCAGC Avi_1274 1070084 - 1070590 + | Phosphinothricin acetyltransferase Avi_1275 1071328 - 1070591 - | hypothetical protein TERM 1199 1070930 - 1070895 - G 75 -5.4 -4.58395 | gap 1, opp_overlap 1070905, overlap 1070896 TTGACGGTGGAAAAA TCGCCATCAAGGCCG ATGCGGG CGGCCTTC-TGGCGG ATCAGCACGGCAGAT TERM 1200 1071131 - 1071144 + g 75 -9.5 -3.92869 | CTCGCCTGTCAGGGT GGCCG TCAG CGGCC TTTCTGGATCGGTGG TERM 1201 1071577 - 1071591 + G 81 -11.4 -3.80841 | GCAGGAGGACGCCCC GGCCTC CGC GAGGCC TTTCCTGCTGCTGCT Avi_1276 1071419 - 1072561 + | transcriptional regulator AraC family TERM 1202 1072735 - 1072708 - T 100 -10.6 -4.64383 | AATCACAAAGCAAAA TTCCGCAAGCCT TATG AGGCCCACGGAA TTGAGGTCTGACTAT TERM 1203 1072764 - 1072803 + T 76 -11.1 -3.33696 | gap 2, opp_overlap 1072764 1072770 1072771, overlap 1072768 ATCGAATGGCATGAA TACCAA-T-TCGAAGATGC TCAC GCATCTTCGAGACTTGGTA TTACTTGGCGCGGCG TERM 1204 1072803 - 1072764 - T 74 -11.1 -3.1886 | gap 2, opp_overlap 1072764 1072768, overlap 1072770 1072771 ATCGAATGGCATGAA TACCAA-T-TCGAAGATGC TCAC GCATCTTCGAGACTTGGTA TTACTTGGCGCGGCG TERM 1205 1072795 - 1072770 - T 76 -10.5 -3.39449 | opp_overlap 1072768 1072764, overlap 1072764 1072771 TGGCATGAATACCAA TTCGAAGATGC TCAC GCATCTTCGAG ACTTGGTATTACTTG TERM 1206 1072794 - 1072771 - T 84 -14 -2.63348 | opp_overlap 1072768 1072764, overlap 1072770 1072764 GGCATGAATACCAAT TCGAAGATGC TCAC GCATCTTCGA GACTTGGTATTACTT ros 1073235 - 1072804 - | transcriptional regulator TERM 1207 1073369 - 1073339 - R 72 -5.3 -4.53303 | opp_overlap 1073341, overlap 1073340 1073341 1073343 TACCCCCACATAAAA TCCACTGCCAGCC AGCCA GGATGGCAGTGTT ATATTAGATATTTAC TERM 1208 1073341 - 1073367 + r 91 -12.3 -3.7212 | opp_overlap 1073340 1073339 1073341 1073343 CCCCCACATAAAATC CACTGCCAGCC AGCCA GGATGGCAGTG TTATATTAGATATTT TERM 1209 1073367 - 1073341 - R 76 -12.3 -2.58418 | opp_overlap 1073341, overlap 1073340 1073339 1073343 CCCCCACATAAAATC CACTGCCAGCC AGCCA GGATGGCAGTG TTATATTAGATATTT mnhG 1074014 - 1073649 - | Na+/H+ antiporter mnhF 1074427 - 1074014 - | Na+/H+ antiporter mnhE 1074912 - 1074439 - | Na+/H+ antiporter TERM 1210 1074674 - 1074648 - G 75 -4.3 -4.81249 | gap 1, overlap 1074640 1074649 GCGGAAAGGCAAAAA TGCC-GGGCTTG ATAT CGAGCCCTGGCG AAAGCACCATGATCG mnhD 1076513 - 1074909 - | Na+/H+ antiporter mnhC 1076941 - 1076564 - | Na+/H+ antiporter mnhB 1077360 - 1076941 - | Na+/H+ antiporter mnhA 1079735 - 1077357 - | Na+/H+ antiporter TERM 1211 1078580 - 1078557 - G 77 -10.2 -3.85698 | overlap 1078565 TTCCTTGGCGAGAAA GCCGAACAGC GGCG GCAGTCCGGC CATGGACAGCCCGGC TERM 1212 1078761 - 1078739 - G 78 -9.9 -4.08706 | gap 1 GGGCGACCAGATAAA GCACG-GCTG CCGA CAGCGCGTGC GGTGAGCCGAAGCCG Avi_1286 1080161 - 1080586 + | transcriptional regulator Avi_1287 1080909 - 1081274 + | hypothetical protein Avi_1289 1081258 - 1082109 + | hypothetical protein TERM 1213 1082087 - 1082128 + T 76 -7.4 -4.15044 | overlap 1082088 GGCAAAGCGATTATC GTCCGCCTATCTCAAG GCCTTAAACA CTTGAGATAGCCGGAA TTTGTTCAAAGCCAG TERM 1214 1082088 - 1082127 + T 72 -10.9 -3.08812 | overlap 1082087 GCAAAGCGATTATCG TCCGCCTATCTCAAG GCCTTAAACA CTTGAGATAGCCGGA ATTTGTTCAAAGCCA TERM 1215 1082210 - 1082198 - T 74 -10.5 -3.14344 | CACCGGGCTTATTAA GCGGC TCC GCCGC CGGGCAGATCGAGTT Avi_1291 1082856 - 1082194 - | hypothetical protein TERM 1216 1083320 - 1083262 - H 100 -14.6 -4.3487 | opp_overlap 1083271, overlap 1083265 1083268 1083270 ACATACAATCGAAAA CAAGAATAGCTAGAGTCTGTCTGGTTCA ATA TGAACCTGACAGACTCTAGCGTCGCGCG TTGGGCACCCTCTCA TERM 1217 1083317 - 1083265 - H 100 -17.1 -4.27465 | opp_overlap 1083271, overlap 1083262 1083268 1083270 TACAATCGAAAACAA GAATAGCTAGAGTCTGTCTGGTTCA ATA TGAACCTGACAGACTCTAGCGTCGC GCGTTGGGCACCCTC TERM 1218 1083314 - 1083268 - H 100 -19.6 -4.23379 | opp_overlap 1083271, overlap 1083265 1083262 1083270 AATCGAAAACAAGAA TAGCTAGAGTCTGTCTGGTTCA ATA TGAACCTGACAGACTCTAGCGT CGCGCGTTGGGCACC TERM 1219 1083312 - 1083270 - H 100 -26.6 -3.69534 | opp_overlap 1083271, overlap 1083268 1083265 1083262 TCGAAAACAAGAATA GCTAGAGTCTGTCTGGTTCA ATA TGAACCTGACAGACTCTAGC GTCGCGCGTTGGGCA Avi_1295 1083647 - 1084864 + | efflux protein Avi_1296 1084868 - 1086811 + | ABC transporter nucleotide binding/ATPase protein TERM 1220 1086839 - 1086815 - T 80 -11.4 -3.41053 | opp_overlap 1086815, overlap 1086829 1086832 TCAAAGGATTGAGAA GGCGGGGC AAAAGAGAA GCCCCGCC TTCTTGCCGGACCGG TERM 1221 1086815 - 1086839 + T 85 -11.4 -3.61398 | opp_overlap 1086815 1086829 1086832 TCAAAGGATTGAGAA GGCGGGGC AAAAGAGAA GCCCCGCC TTCTTGCCGGACCGG Avi_1297 1088738 - 1086912 - | acylase and diesterase protein TERM 1222 1088504 - 1088514 + g 72 -4.6 -4.59773 | overlap 1088499 1088501 TGCCGCCTTCGCGGT GGGT ACT GCCC TTTTTGAGAATGAAG TERM 1223 1089130 - 1089114 - g 78 -9.3 -4.07885 | CACTTCGGCTCAAAA GCCGCCC TAT GGGAGGC ATGCCTCGAACGCAT TERM 1224 1089405 - 1089425 + G 78 -6.1 -4.59853 | CTGGGACTGGTCCAC CGGCAGG ATGCATC CCTGCTG TTTTTCACCCATTCC Avi_1298 1088907 - 1089614 + | transcriptional regulator TetR family TERM 1225 1090016 - 1089990 - T 100 -12.3 -5.38549 | opp_overlap 1089987 1089986 TCGAAATAACAAAAA GGCGAAGCATC TTTTT GAAGCTTCGCC TCGCTATTGCTGTTA Avi_1301 1091606 - 1090098 - | Growth regulating protein TERM 1226 1091879 - 1091835 - R 100 -3.5 -5.72622 | overlap 1091836 1091864 TGCATAAACAAAAAA TTAGTGCACGAAAGCATGAAC GAA GTGAATGCGTCAGTGCACTAG AGCGCCGCGCAGAAA TERM 1227 1091878 - 1091836 - R 70 -7 -4.01946 | overlap 1091835 1091864 GCATAAACAAAAAAT TAGTGCACGAAAGCATGAAC GAA GTGAATGCGTCAGTGCACTA GAGCGCCGCGCAGAA Avi_1302 1092508 - 1092089 - | hypothetical protein Avi_1303 1093097 - 1092633 - | hypothetical protein TERM 1228 1093955 - 1093978 + GH 74 -11 -3.25802 | gap 1, opp_overlap 1093954 1093953, overlap 1093945 1093958 GCGCGGGTAGAAACC GTCGGCGGGCG CGA TGCCCGC-GAC TTCCTGCCTTTCCTG TERM 1229 1094662 - 1094648 - gH 73 -3.4 -4.72986 | CAGGCGCAGGAAAAA GGCGTG AAG CTCACC AGCCGCATTGGCCGC Avi_1305 1093529 - 1095328 + | two component sensor kinase TERM 1230 1095338 - 1095358 + GT 70 -4.6 -4.4891 | gap 1, opp_overlap 1095339, overlap 1095339 GCCTGATAAAAGAAA ACCGGC-CC GCAA GGAGCCGGG TTTTCTGATGATGGC TERM 1231 1095357 - 1095339 - gT 100 -9.5 -5.18371 | opp_overlap 1095339 1095338 CCTGATAAAAGAAAA CCGGCCC GCAAG GAGCCGG GTTTTCTGATGATGG Avi_1306 1095300 - 1096424 + | hypothetical protein Avi_1307 1097822 - 1096491 - | hypothetical protein Avi_1308 1100934 - 1097824 - | AcrB/AcrD/AcrF family protein TERM 1232 1100244 - 1100224 - G 76 -6.8 -4.41348 | gap 1, overlap 1100225 1100226 GTCTTCCGAAATAAA GCGC-CCGC CGAC GCGAAGCGC GATCCGCTCCGGCCC Avi_1309 1102025 - 1100931 - | efflux protein TERM 1233 1101714 - 1101687 - G 83 -13.4 -3.57144 | gap 1, opp_overlap 1101680 CTGCGCATTCTCAAA GGCCG-CCTGGGC ATT GCGCAGGTCGGCC TCGGCGCTGTTGACG Avi_1311 1103100 - 1102027 - | HlyD family secretion protein TERM 1234 1103730 - 1103744 + G 75 -5.6 -4.56597 | overlap 1103731 CTGGTGGAGGGGGGC GTCGCC GCC GGCGAA TTTTTGCCAGGCCCG Avi_1313 1103274 - 1103915 + | transcriptional regulator TetR family TERM 1235 1104286 - 1104301 + G 70 -4.7 -4.44915 | GTGGAAATCGAGATT GACCA GTTGGA TGGTC TTTTGTCGCTGGTTG Avi_1314 1103974 - 1104330 + | hypothetical protein Avi_1315 1105448 - 1104402 - | hypothetical protein TERM 1236 1105300 - 1105284 - G 73 -2.9 -4.7254 | ACTGGCGATGAAAAA TGCCACA GCT TCCGGCA CATTGGGCGATTGCG TERM 1237 1105633 - 1105650 + H 72 -6.9 -4.2558 | CATATCCTTGCGTGA GCGTTGC AGCG GCATCGC TTTTACTCGGAAATG TERM 1238 1105796 - 1105786 - H 70 -6.8 -4.07568 | CTTTGCTGCCCAAAA CAGC AAG GCTG GATGTGCTGGCCCCT Avi_1318 1105862 - 1106062 + | hypothetical protein Avi_1319 1106704 - 1107129 + | exopolysaccharide production repressor protein Avi_1320 1108368 - 1107271 - | transcriptional regulator Avi_1321 1109147 - 1108596 - | hypothetical protein TERM 1239 1108663 - 1108642 - G 72 -4.4 -4.63218 | gap 1, opp_overlap 1108648 GCGTTTGTAAGAAAA GCCT-GCGC ATCGG GCGCGAAGC TGGCTTGAGGCACAA Avi_1322 1109787 - 1109140 - | hypothetical protein Avi_1323 1111960 - 1109837 - | penicillin binding protein TERM 1240 1111581 - 1111565 - G 72 -5 -4.60924 | opp_overlap 1111575 1111576, overlap 1111555 1111567 GAAATGGTCGAAAAA CCGCCG GTCTT CGGTGG CCAGCACCGCTTTGA Avi_1324 1112202 - 1112681 + | hypothetical protein Avi_1325 1114017 - 1112920 - | hypothetical protein Avi_1327 1114516 - 1115568 + | hypothetical protein cueR 1115984 - 1116412 + | Cu(I)-responsive transcriptional regulator TERM 1241 1116962 - 1116979 + F 71 -3.3 -4.8066 | CGGAAATCTGCGGCT TCGGTCC TTCC GGTTCGA TTTTTACGTTCTCTT TERM 1242 1117415 - 1117399 - g 74 -2.1 -5.02074 | overlap 1117400 GCACGCTGGAAAAAA TCGATGC GCT GCAACGG CAATTGGTCCGTGAC Avi_1329 1117080 - 1117622 + | hypothetical protein TERM 1243 1118064 - 1118052 - g 86 -9.1 -4.56597 | TCGGCTGGTGAAAAA TCCGC TGT GCGGA TTGCACTGGTGGGCG TERM 1244 1118924 - 1118949 + G 75 -5.3 -4.56597 | opp_overlap 1118940 1118942, overlap 1118916 1118925 1118941 1118942 GCGGGCCGAGCCTGT GGCGGCTCTCT ATGA ACAGGGCCGCG TTTTTCACGCAGCCC TERM 1245 1118941 - 1118965 + G 71 -7 -4.13014 | opp_overlap 1118940 1118942, overlap 1118925 1118924 1118942 CGGCTCTCTATGAAC AGGGCCGCGT TTTTC ACGCAGCCCG TTTTGCCGATCTGGA TERM 1246 1118964 - 1118942 - g 76 -12.7 -3.13403 | opp_overlap 1118925 1118924 1118941 1118942, overlap 1118940 GGCTCTCTATGAACA GGGCCGCGT TTTTC ACGCAGCCC GTTTTGCCGATCTGG Avi_1330 1117734 - 1119113 + | large terminase TERM 1247 1119758 - 1119783 + G 73 -11.9 -3.14132 | gap 1, opp_overlap 1119777 CGCGCCTATGCAGCG GGC-CGCTTGCC CCA GGTAAGCGCGCC TTACTGGCGGCCGGA Avi_1332 1119497 - 1120105 + | hypothetical protein TERM 1248 1120515 - 1120498 - g 70 -4 -4.68124 | overlap 1120499 CCAACACAGACAAAA GCGGGG ATACGA CCCCGT GCAGGATTGGAAATG TERM 1249 1120609 - 1120660 + G 75 -10.6 -3.64915 | overlap 1120642 TTTCTCGGCAATCCG GTGGCGCATCGGGCGGTGCGGCTG GTGG CGGAGGCAGCGGCCGCTGTGCCGC TTCTGCTTTATCAGG TERM 1250 1120722 - 1120763 + G 77 -2.7 -5.03715 | gap 1, opp_overlap 1120690, overlap 1120715 1120723 1120724 CGAGCATCCGGCGCT GGCGCTTCTGGC-CCGGCCC AAT GGGCGGGCGACGGGGGCGGA TTTTTTCGAAATGCT Avi_1334 1120420 - 1121622 + | phage portal protein HK97 family Avi_1335 1121812 - 1122129 + | hypothetical protein Avi_1337 1122178 - 1122747 + | phage prohead protease HK97 family TERM 1251 1123286 - 1123268 - g 86 -8.8 -4.56597 | CGCGGTGCTGAAAAA GCCGTTTG CCC CAAGCGGC ATGGCCTCCGGCTGG TERM 1252 1123584 - 1123604 + G 81 -12.5 -3.53012 | opp_overlap 1123573 AAGATCGGCTTCAAG GCGACCGGC GCT GCCGGTGGC TTTGCCGCAAGCGGG Avi_1338 1122759 - 1124021 + | phage major capsid protein HK97 family Avi_1339 1124126 - 1124695 + | hypothetical protein Avi_1340 1124710 - 1125033 + | hypothetical protein Avi_1343 1125187 - 1125585 + | hypothetical protein Avi_1344 1126819 - 1125575 - | MFS permease TERM 1253 1126883 - 1126897 + H 72 -8.6 -3.78962 | TTCAAGACACGGCTG TGTCTG GTC CAGACA TTTACATCTGTTTGC Avi_1345 1127172 - 1127582 + | hypothetical protein Avi_1346 1127579 - 1127998 + | hypothetical protein TERM 1254 1128016 - 1128069 + F 73 -9.5 -3.62096 | gap 1, opp_overlap 1128030 1128031 GCCGCAGCGGGTCGA TCCGACACGGCAAAGCCGCCTCCC TTTCCCT GGGAGGCGGTGATGCA-TGCCGGA TTTCACCTGCTGCGG TERM 1255 1128056 - 1128030 - f 81 -10.8 -3.63805 | opp_overlap 1128016, overlap 1128031 ATCCGACACGGCAAA GCCGCCTCCC TTTCCCT GGGAGGCGGT GATGCATGCCGGATT TERM 1256 1128055 - 1128031 - f 85 -14.3 -2.77962 | opp_overlap 1128016, overlap 1128030 TCCGACACGGCAAAG CCGCCTCCC TTTCCCT GGGAGGCGG TGATGCATGCCGGAT Avi_1347 1128058 - 1128246 + | gene transfer agent (GTA) orfg10 TERM 1257 1128593 - 1128616 + G 79 -13.2 -3.36694 | gap 1, overlap 1128588 1128592 ACGCCTTTTGCCTCT GGTGGGG-TGG TGT CCAGCCCCACC TATTTCGGCATGGAT Avi_1349 1128257 - 1128856 + | hypothetical protein TERM 1258 1129340 - 1129353 + G 70 -2.4 -4.72497 | overlap 1129331 ACCACCGGGCTAGTG TCCT TCAATC AGGA TTTTATTCCTGCCTC Avi_1350 1128866 - 1129501 + | hypothetical protein TERM 1259 1129648 - 1129659 + GF 70 -7.2 -4.07687 | GGTACACTGTTTCAT GCCG CCAG CGGC TTTTCCGCCAGCGAT Avi_1351 1129498 - 1130388 + | hypothetical protein Avi_1352 1130363 - 1130731 + | hypothetical protein TERM 1260 1131337 - 1131317 - g 77 -10.3 -3.90922 | ATTGCCGCCAAACAA GGCGAGGGC AAT GCGCCCGCC TATCGCGGCGTCGCC TERM 1261 1134008 - 1134021 + G 76 -4.5 -4.72986 | CGTCTGAGTGTCACC CTGTC CTAT GGCAG TTTTTCCTCCGGCTC TERM 1262 1134283 - 1134340 + G 82 -10.7 -4.14243 | gap 4, opp_overlap 1134274 1134332 CGAAATCGGCCTGAC GCTGAACTGGATCGCCGAGGCCGC-AGGC ACCA GCCTTGCGGCCAAGG-GA-CCGG-TCAGC TTTTCCGGTGGCGTG Avi_1354 1130903 - 1134694 + | gene transfer agent (GTA) orfg15 Avi_1355 1134738 - 1134977 + | hypothetical protein TERM 1263 1135075 - 1135027 - f 100 -14.9 -3.89215 | opp_overlap 1135023, overlap 1135021 1135028 TCTCATAAATTGAAA TGCTTGGCCTGTCGCA-GATCTG TCATG CAGATCGTGCCACAGGCCAAG-A TTACCATGCATTCAT TERM 1264 1135075 - 1135028 - f 100 -16.5 -2.93047 | gap 1, opp_overlap 1135023, overlap 1135027 1135021 CTCATAAATTGAAAT GCTTGGCCTGTCGCA-GATCTG TCATG CAGATCGTGCCACAGGCCAAGA TTACCATGCATTCAT Avi_1357 1135157 - 1135525 + | hypothetical protein phoP 1135659 - 1136333 + | two component response regulator popQ 1136334 - 1137749 + | two component sensor kinase lipA 1137981 - 1138400 + | lipoic acid synthetase TERM 1265 1138632 - 1138592 - f 95 -6.9 -5.25803 | overlap 1138594 1138596 AATGCGTACAAAAAA GAGATAGAGTTTTTCAGCG TTT CGCTGAAAAACTCTAGGGA GCCTTATGCTGTTCT TERM 1266 1138630 - 1138594 - f 100 -13.9 -4.25873 | overlap 1138592 1138596 TGCGTACAAAAAAGA GATAGAGTTTTTCAGCG TTT CGCTGAAAAACTCTAGG GAGCCTTATGCTGTT TERM 1267 1138628 - 1138596 - f 100 -20.9 -3.72236 | overlap 1138594 1138592 CGTACAAAAAAGAGA TAGAGTTTTTCAGCG TTT CGCTGAAAAACTCTA GGGAGCCTTATGCTG TERM 1268 1138673 - 1138688 + G 77 -2.4 -5.07486 | overlap 1138674 TGCTGTTCTGACCTT TGCCGT TGCT GCGGCC TTTTTATTGCCGCTG TERM 1269 1139163 - 1139147 - g 70 -3.6 -4.64676 | opp_overlap 1139154 CTATCTGCAACAAAA CCGCAT GGGCG AGGCGG AACTGGCCTTTCGCA cycH 1138638 - 1139786 + | cycH protein cycJ 1139783 - 1140232 + | cytochrome-c biosynthesis heme-carrier protein cycJ TERM 1270 1141586 - 1141599 + G 70 -2.3 -4.8083 | overlap 1141582 TTCTGTCCGTGCTGG GGCTG GCCG CAGGC TTTTTCCTGATGTTC ccmF 1140229 - 1142232 + | cytochrome c-type biogenesis protein CcmF cycL 1142229 - 1142687 + | cycL protein TERM 1271 1142878 - 1142904 + F 70 -3.6 -4.71061 | opp_overlap 1142879, overlap 1142879 GAAAAGCATGACACG ACGATCGGTTAT CGC GTTACCGGTCGA TTTTTCCATATAGAT dop 1143352 - 1144827 + | serine protease DO-like protease TERM 1272 1144838 - 1144873 + F 100 -16.2 -3.01924 | opp_overlap 1144818 GCTGATGATCAGGCC TCTGGCGGCGGCTGGA CCAT TTCAGTCGCCGCCAAA TCTTCCGGCAGGATG TERM 1273 1145075 - 1145106 + G 71 -11.4 -3.17319 | overlap 1145072 CGAGGCGGGGATCAT GGCCGACCACGCCA GCGA TGGCGAGGCGGGCC TGTTCATGGGTTGCG ragA 1144917 - 1145675 + | two component response regulator ragB 1145685 - 1147091 + | two component sensor kinase TERM 1274 1147535 - 1147556 + G 90 -7.2 -5.14965 | overlap 1147537 TGATGAGCCGGTTGC GTCAGGCC AAGCGG GGCCTGTC TTTTTTGCTGGCACT TERM 1275 1147537 - 1147554 + G 78 -8.4 -4.20707 | overlap 1147535 ATGAGCCGGTTGCGT CAGGCC AAGCGG GGCCTG TCTTTTTTGCTGGCA TERM 1276 1148046 - 1148085 + G 75 -9.8 -3.86822 | opp_overlap 1148046 GGCCGCCTTTATCAA GGCCCGGGCGCTGGCAGG GGAT CTTGCCGCCGGTCAGGCC TTTCTCAAGGAATTG TERM 1277 1149764 - 1149751 - g 75 -5.9 -4.71061 | ATCGATAGCGAAAAA CCGCC GAAG GACGG ATGGGACTTGAAGCT glnE 1147159 - 1150170 + | glutamate-ammonia-ligase adenylyltransferase pleC 1152515 - 1150143 - | two component sensor kinase TERM 1278 1150955 - 1150965 + g 70 -2.4 -4.82901 | ACAGTTCCGCCTTTT GCCG TTC CAGC TTTTTCTGCGACGAA TERM 1279 1151267 - 1151307 + g 70 -2.3 -4.82901 | opp_overlap 1151272 1151281, overlap 1151268 TATCGGGCAGGCCGT AGACATGCTGGAAATGGGC ATT GCACATCACCAGCCGGTCG TTTTTGTCCCAGAGC TERM 1280 1152773 - 1152748 - R 100 -17.5 -5.24129 | opp_overlap 1152748 CTTGCGCAGAAAAAA GGGGCGGACGC ATGT GCGACCGCCCC TTTGGGAAGACCAAA TERM 1281 1152748 - 1152773 + r 100 -17.5 -3.53012 | opp_overlap 1152748 CTTGCGCAGAAAAAA GGGGCGGACGC ATGT GCGACCGCCCC TTTGGGAAGACCAAA pepN 1155479 - 1152801 - | aminopeptidase N TERM 1282 1155668 - 1155657 - R 87 -4.4 -5.30339 | opp_overlap 1155657, overlap 1155627 ACGAAAACAGAAAAA TGAG CTAT CTCA TTGTTTTCAAAGATT mcpA 1156916 - 1155804 - | methyl-accepting chemotaxis protein TERM 1283 1158038 - 1158058 + G 74 -7.6 -4.25104 | gap 1 TGGCCTTTGCGGGGA TCTGCGGCG GCCT CGCC-CAGA TTTTGCTGACGGAAA Avi_1379 1157341 - 1158294 + | permease Avi_1380 1159538 - 1158306 - | MFS permease TERM 1284 1158780 - 1158746 - G 74 -11.5 -3.51329 | overlap 1158729 CAGCGCCAACCATAA CGCGGCGGCGGTCC-AT GCG ATCGGACAGCCGCC-CG AGCGGCATCTGCGCG Avi_1381 1160177 - 1161106 + | hypothetical protein TERM 1285 1161165 - 1161182 + T 73 -11.3 -2.65354 | opp_overlap 1161161 1161159, overlap 1161161 AGATGAAAACCGCCG TCCCGCT TTCA AGCGGGA TCACTTTAAAATGGA TERM 1286 1161303 - 1161291 - T 72 -10.5 -3.02511 | TGGATCTGTTGAATA GCCCG CAT CGGGC GGATTGCGAGGCGTC Avi_1384 1162616 - 1161708 - | DNA polymerase Avi_1385 1163967 - 1162675 - | molecular chaperone Hsp70 family TERM 1287 1164176 - 1164141 - R 100 -17 -2.90212 | opp_overlap 1164146, overlap 1164146 CTACGACTTGACAGA TGAAAGCGCCGCGTTC GGTC AAACGCGGCGCTTTGA AGCGGCAATTATGAA TERM 1288 1164146 - 1164171 + r 100 -16.2 -3.53343 | opp_overlap 1164141 1164146 ACTTGACAGATGAAA GCGCCGCGTT CGGTCA AACGCGGCGC TTTGAAGCGGCAATT TERM 1289 1164171 - 1164146 - R 100 -16.9 -3.88766 | opp_overlap 1164146, overlap 1164141 ACTTGACAGATGAAA GCGCCGCGTTC GGTC AAACGCGGCGC TTTGAAGCGGCAATT Avi_1387 1164405 - 1164202 - | hypothetical protein Avi_1388 1167551 - 1164420 - | AcrB/AcrD/AcrF family protein TERM 1290 1164772 - 1164789 + g 78 -3.5 -5.07486 | gap 1, overlap 1164772 1164773 AATTCCACCGCCACG T-CGATCA TCA TGATCGCA TTTTTCTTGACGATG TERM 1291 1166894 - 1166917 + g 73 -12.4 -3.05844 | ACTGATTTGCCATCT GCAAGGTGCC GATT GGCACCTGGC TATTGGCATCGGCAA TERM 1292 1167476 - 1167464 - G 71 -6.9 -4.11216 | overlap 1167472 1167473 CGGCCACCGGCAAAA GCCGA TAA CCGGC CAATCCAGCCAGGAC Avi_1389 1168855 - 1167548 - | HlyD family secretion protein TERM 1293 1168329 - 1168362 + g 79 -13.9 -3.07222 | overlap 1168319 CGCGTCAAGGCAGCC TCGTATTCGGCCAGG CTGG CCTGGTCGGAAACGA TATTGGCCTGGTCCT TERM 1294 1168828 - 1168846 + g 81 -3.1 -5.24989 | overlap 1168830 CAAGGATTGCGATGA TGCTGGA GGCGG TCCAGAA TTTTTTCATGTGTCA Avi_1391 1169831 - 1169046 - | NAD/NADP dependent oxidoreductase TERM 1295 1169160 - 1169176 + g 72 -6.5 -4.27192 | TTCCACCTTGCCAAG CCGTCCT ATC GGGATGG TTTTGATCGAGCTTT Avi_1392 1170115 - 1171776 + | electrotransfer ubiquinone oxidoreductase TERM 1296 1171792 - 1171756 - f 77 -12.3 -2.74488 | overlap 1171747 CAAGGAGGCGAAGGA CCGGTTTACCCGAACAT GTA ATGTTCGGGTAGGGCGG TCCGCACGGACCTCC TERM 1297 1171865 - 1171829 - f 70 -10.9 -2.71731 | opp_overlap 1171799 GGGAGCGGCGAAGGA CCGGTTTATCCGAACAT GTA ATGTTCGGGTAAGGCGG TCCGCACGGACCTCC TERM 1298 1172223 - 1172195 - f 78 -10.5 -3.5032 | opp_overlap 1172194 1172193 1172192 1172199, overlap 1172193 CGTCTATACGAAACA TCAATAGGTCA GCAATAT TGACCTATTGA CTGATTTGAGGAGAT TERM 1299 1172325 - 1172352 + G 73 -12 -3.01924 | opp_overlap 1172315 1172313 GCAGAGCGCCTTGAG GCGTTCCAGAGC CTGG GCTTTGGTACGC TGTTCAGCGACCATA TERM 1300 1172853 - 1172819 - g 100 -15.6 -4.07568 | opp_overlap 1172848 1172849, overlap 1172822 CTGGGTTTCGGAAAA CTACACCCGCGCAGCC CCC GGCGGCACGGGTGCCG CCAAATGCGGCGGCA TERM 1301 1172850 - 1172822 - g 100 -18.1 -3.08032 | opp_overlap 1172848 1172849, overlap 1172819 GGTTTCGGAAAACTA CACCCGCGCAGCC CCC GGCGGCACGGGTG CCGCCAAATGCGGCG TERM 1302 1173176 - 1173145 - g 74 -8 -4.13945 | gap 1, opp_overlap 1173172, overlap 1173162 AGGCGGATGCCAAAA GCGGCAAGCTGAAAG AAG CCTTC-GCCTGCGGC ACGGCCGCTGTGGTG Avi_1393 1172247 - 1173350 + | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase protein TERM 1303 1173358 - 1173377 + F 95 -9.2 -4.99056 | opp_overlap 1173358 GCGTCTGATACAAAA GGCCGGTA GTGA TCCCGGCC TTTTTAATTATATTC TERM 1304 1173377 - 1173358 - f 90 -9.2 -4.52589 | opp_overlap 1173358 GCGTCTGATACAAAA GGCCGGTA GTGA TCCCGGCC TTTTTAATTATATTC cfa 1173648 - 1174940 + | cyclopropane-fatty-acyl-phospholipid synthase Avi_1396 1175216 - 1174953 - | hypothetical protein Avi_1397 1176167 - 1175298 - | hypothetical protein TERM 1305 1176409 - 1176367 - R 70 -10.1 -3.26031 | overlap 1176363 1176365 CTCACTTTAAAGAGA TTTCGAATATCTCAAATGC ATGAA GGGCTTGAGATATTCGAAA ACGGAATGCGAAGAG TERM 1306 1176450 - 1176411 - R 85 -10.2 -4.18401 | gap 1, opp_overlap 1176424, overlap 1176416 TGAGATATTCGAAAA CGGAATGCGAAGAGTCATT GAA AATGACTCTTCGCATAA-G ACATAGCAGTGTAAG TERM 1307 1176446 - 1176416 - R 100 -20 -3.37537 | opp_overlap 1176424, overlap 1176411 TATTCGAAAACGGAA TGCGAAGAGTCATT GAA AATGACTCTTCGCA TAAGACATAGCAGTG mgtE 1177885 - 1176509 - | magnesium transport protein Avi_1399 1179467 - 1178385 - | MFS permease Avi_1401 1180059 - 1180913 + | hypothetical protein TERM 1308 1180947 - 1180929 - T 100 -13.1 -4.2717 | opp_overlap 1180918 1180929 AGCATGTCATGAAAA CGCCCGG ACGAG CCGGGCG TTTAAACTGTGACAT TERM 1309 1180929 - 1180947 + T 93 -13.1 -3.63805 | opp_overlap 1180929, overlap 1180918 AGCATGTCATGAAAA CGCCCGG ACGAG CCGGGCG TTTAAACTGTGACAT Avi_1402 1182581 - 1180977 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 1310 1182543 - 1182564 + g 72 -6.5 -4.30441 | overlap 1182546 TGTGACCTTCAGGTC CTTGACGGT CAGC ACCGTCTGG TTTTCGGTCTTGTCC Avi_1403 1183705 - 1182584 - | ABC transporter membrane spanning protein (oligopeptide) Avi_1404 1184621 - 1183698 - | ABC transporter membrane spanning protein (oligopeptide) TERM 1311 1184674 - 1184629 - R 77 -10.4 -3.58343 | gap 1, opp_overlap 1184633 1184634 1184636, overlap 1184631 1184632 TTGATCATGGTCAAA TAG-CCGACGCGCGACGGACC GGATT GGCCCATCGCGCGTCATTCTC CTGTTCGACGTTACT TERM 1312 1184671 - 1184631 - R 89 -13.2 -3.36991 | opp_overlap 1184633 1184634 1184636, overlap 1184629 1184632 GATCATGGTCAAATA GCCGACGCGCGACGGACC GGATT GGCCCATCGCGCGTCATT CTCCTGTTCGACGTT TERM 1313 1184670 - 1184632 - R 100 -16.7 -2.61873 | opp_overlap 1184633 1184634 1184636, overlap 1184631 1184629 ATCATGGTCAAATAG CCGACGCGCGACGGACC GGATT GGCCCATCGCGCGTCAT TCTCCTGTTCGACGT TERM 1314 1184633 - 1184669 + r 95 -14.3 -3.52073 | opp_overlap 1184632 1184631 1184629, overlap 1184634 1184636 TCATGGTCAAATAGC CGACGCGCGACGGACCG GAT TGGCCCATCGCGCGTCA TTCTCCTGTTCGACG TERM 1315 1184634 - 1184668 + r 100 -17.8 -2.70923 | opp_overlap 1184632 1184631 1184629, overlap 1184633 1184636 CATGGTCAAATAGCC GACGCGCGACGGACCG GAT TGGCCCATCGCGCGTC ATTCTCCTGTTCGAC TERM 1316 1184636 - 1184666 + r 90 -14.6 -2.89527 | opp_overlap 1184632 1184631 1184629, overlap 1184634 1184633 TGGTCAAATAGCCGA CGCGCGACGGACCG GAT TGGCCCATCGCGCG TCATTCTCCTGTTCG Avi_1405 1186283 - 1184685 - | ABC transporter substrate binding protein (oligopeptide) TERM 1317 1184931 - 1184961 + g 71 -6.8 -4.11216 | GCTGTAGTTGAAGGT CGTGTTGGTGCTGA TCG TCAGCGCCAGGAAG TTTTCCGGGTCGGCA glnA 1187943 - 1186588 - | glutamine synthetase TERM 1318 1188183 - 1188152 - g 70 -2.2 -4.84274 | opp_overlap 1188162 CAATGACACCAAAAA GCTGAATGAGGCAG GTGT CCGCATTATTGAGC GGGCCGAAGGCGTCC TERM 1319 1189293 - 1189335 + G 82 -14.2 -2.93623 | gap 1, opp_overlap 1189293, overlap 1189290 1189290 1189324 CAGGTGCGTAATCAA TGC-GTTGCGGGTGGCGTG ATTGTC CGCGCCACCGGCGACCGCA TGCTGTTTTCGCCGC bioA 1188069 - 1189439 + | adenosylmethionine-8-amino-7-oxononanoate transaminase Avi_1408 1189734 - 1189447 - | hypothetical protein Avi_1409 1190351 - 1189737 - | transcriptional regulator protein TERM 1320 1189930 - 1189960 + g 70 -3.8 -4.58395 | overlap 1189913 1189934 CGGGCGATGGCAATC TCTACCGCTTCGGC ATT GTCGTCGAGGTGGA TTTTTCCAGCCTCGG Avi_1410 1191970 - 1190444 - | hypothetical protein Avi_1411 1192880 - 1191972 - | glycosyltransferase transmembrane protein TERM 1321 1193163 - 1193174 + G 75 -3.6 -4.82901 | overlap 1193155 CCTTTATCGCCATTG CCGC TTAT GTGG TTTTTGTCGAAGCCG TERM 1322 1193794 - 1193808 + G 78 -9.2 -4.07687 | opp_overlap 1193793 CCTGATGCAGGTAAC GCCGCT ATC GGCGGC TTTTGGCGGAGCACT Avi_1413 1193084 - 1194055 + | hypothetical protein TERM 1323 1194081 - 1194061 - T 71 -10.5 -2.91888 | opp_overlap 1194064, overlap 1194049 1194064 1194075 1194076 AAAGCCCTGAAACGA CAAGGCATC AAA GATGCCTTA CTGGAAGGCCGTCTC TERM 1324 1194078 - 1194064 - T 77 -10 -3.60151 | opp_overlap 1194064, overlap 1194049 1194061 1194075 1194076 GCCCTGAAACGACAA GGCATC AAA GATGCC TTACTGGAAGGCCGT TERM 1325 1194064 - 1194078 + T 70 -10 -3.14211 | opp_overlap 1194049 1194064 1194061 1194075 1194076 GCCCTGAAACGACAA GGCATC AAA GATGCC TTACTGGAAGGCCGT amn 1195593 - 1194079 - | AMP nucleosidase TERM 1326 1194683 - 1194707 + g 73 -12.2 -3.04792 | TGGTCGGTGATTGTC TTGGCGTTGG ACGGG CCAACGCCGA TATTGACCATGGTAA TERM 1327 1195055 - 1195067 + g 72 -9.1 -3.83409 | overlap 1195063 1195065 GCTGGCGGCTCATAT TCGCC ATT GGCGA TTTCATCGTCTGTGG TERM 1328 1195902 - 1195852 - H 70 -10.6 -2.78463 | opp_overlap 1195844, overlap 1195884 ATGTCTCTCATGATA TCCCCCGATAGCTTGATGGTTT TGATATG AAACGATCAAGCTATCGCGAGG CTGGAATTCTGGCTG Avi_1416 1196008 - 1196700 + | glutathione S-transferase TERM 1329 1196750 - 1196727 - T 100 -16.7 -3.10589 | overlap 1196719 CAAAAATGGTCAATA CCGCGCCGG TATGAT CCGGCGCGG CGAAATATTACAGTC Avi_1419 1197096 - 1196758 - | hypothetical protein Avi_1420 1197626 - 1197892 + | hypothetical protein TERM 1330 1197948 - 1197977 + T 100 -8.6 -5.45802 | gap 1, opp_overlap 1197948 TACCAAACTATTCAA CCGCGACCAGC AGGAACAAG GCTGG-CGCGG TTTTTGTTTTCAAAC hisC 1199081 - 1198008 - | histidinol-phosphate aminotransferase Avi_1424 1199691 - 1199278 - | hypothetical protein Avi_1425 1200215 - 1199862 - | hypothetical protein TERM 1331 1201653 - 1201642 - g 72 -4.4 -4.59773 | TGTCACGGCCAAAAA GCTT CTGG AAGC CGGCGGGTCCGCCGA Avi_1426 1200503 - 1201720 + | ferredoxin reductase TERM 1332 1202086 - 1202065 - T 100 -13.7 -5.5074 | opp_overlap 1202063 1202062 CAAGGCAATAAAAAA CCTCCGGGC GTAA ACCCGGAGG CAATTGTCAACTGAA Avi_1427 1203150 - 1202116 - | outer membrane protein TERM 1333 1203231 - 1203262 + r 100 -17.4 -3.44844 | overlap 1203223 GCCCCCCGGCATACT GACTAGGCCCCG AATTCCAA CGGGGCCTAGTC TTAGTCTTATCTCCT Avi_1428 1204333 - 1203287 - | outer membrane protein TERM 1334 1204720 - 1204738 + r 73 -9.6 -3.63922 | opp_overlap 1204719, overlap 1204718 CGATCTGCAGCAGAG TCGCTTCA AGG TGAGGCGA TGTTTTCAACAGCCT Avi_1430 1206159 - 1205272 - | hypothetical protein Avi_1431 1208331 - 1206202 - | soluble lytic transglycosylase TERM 1335 1206282 - 1206302 + g 75 -9.6 -3.85698 | GGTAGTTTTCCATGA CGCGCTGC ACATA GCCGCGCG TTTCTGGGAAGGGGA TERM 1336 1207843 - 1207854 + g 79 -7.2 -4.62471 | overlap 1207829 GGCTGGTGGGTTTTC GCGC AACA GCGC TTTTTCCGAATTGGC dapA 1208519 - 1209403 + | dihydrodipicolinate synthase TERM 1337 1209424 - 1209447 + F 76 -9.6 -3.73068 | gap 1, opp_overlap 1209417 TCAATTGAGGGCTGG GCCGGAGTACA CAT TG-GCTCCGGC TTCTTCCATTACGGG TERM 1338 1209939 - 1209916 - g 83 -5.2 -4.87291 | gap 1 TATTTCAACGAAAAA GGCC-GCGCCA AGC TGGAACTGGCC TTGGCCAAGGGCAAG smpB 1209556 - 1210032 + | SSRA-binding protein TERM 1339 1210171 - 1210115 - T 91 -9.6 -4.68919 | gap 2, opp_overlap 1210119 1210120 1210129, overlap 1210118 1210120 1210123 AAAGACAAACGAAAA CAAGAGCATCGAGAGTCTGTCTGGTTCA ATT TGAACCTGACAGACTCTCG-TACGGC-G TTTTGGCAGGCATGG TERM 1340 1210169 - 1210118 - T 100 -14.6 -4.40882 | gap 1, opp_overlap 1210119 1210120 1210129, overlap 1210115 1210120 1210123 GACAAACGAAAACAA GAGCATCGAGAGTCTGTCTGGTTCA ATT TGAACCTGACAGACTCTCG-TACGG CGTTTTGGCAGGCAT TERM 1341 1210119 - 1210171 + T 95 -12.2 -4.08216 | gap 2, opp_overlap 1210118 1210115 1210120 1210123, overlap 1210120 1210129 ACAAACGAAAACAAG AGC-AT-CGAGAGTCTGTCTGGTTCA ATT TGAACCTGACAGACTCTCGTACGGCG TTTTGGCAGGCATGG TERM 1342 1210167 - 1210120 - T 100 -21.6 -3.78172 | gap 1, opp_overlap 1210120 1210119 1210129, overlap 1210118 1210115 1210123 CAAACGAAAACAAGA GCATCGAGAGTCTGTCTGGTTCA ATT TGAACCTGACAGACTCTCG-TAC GGCGTTTTGGCAGGC TERM 1343 1210120 - 1210170 + T 95 -15.7 -3.04715 | gap 2, opp_overlap 1210118 1210115 1210120 1210123, overlap 1210119 1210129 CAAACGAAAACAAGA GC-AT-CGAGAGTCTGTCTGGTTCA ATT TGAACCTGACAGACTCTCGTACGGC GTTTTGGCAGGCATG TERM 1344 1210165 - 1210123 - T 100 -22.2 -2.94958 | opp_overlap 1210120 1210119 1210129, overlap 1210120 1210118 1210115 ACGAAAACAAGAGCA TCGAGAGTCTGTCTGGTTCA ATT TGAACCTGACAGACTCTCGT ACGGCGTTTTGGCAG TERM 1345 1210129 - 1210159 + T 100 -17 -2.79312 | opp_overlap 1210123 1210120 1210118 1210115, overlap 1210120 1210119 ACAAGAGCATCGAGA GTCTGTCTGGTTCA ATT TGAACCTGACAGAC TCTCGTACGGCGTTT ada 1211779 - 1210706 - | methylated-DNA--protein-cysteinemethyltransferase TERM 1346 1211608 - 1211588 - G 81 -12.5 -3.60792 | opp_overlap 1211583 1211581 CTTGCAAGGGCGAAA GCCGCCTTC AAG GCAGGCGGC GATGGTCTCTGTGAA TERM 1347 1211840 - 1211823 - R 100 -11.3 -4.56597 | opp_overlap 1211823 TCCGCCGCCGAAAAA CGGGCAT GGAT ATGCCCG TTTTCAAAAATGTTC TERM 1348 1211823 - 1211840 + r 91 -11.3 -4.11371 | opp_overlap 1211823 TCCGCCGCCGAAAAA CGGGCAT GGAT ATGCCCG TTTTCAAAAATGTTC mcpV 1213404 - 1211890 - | methyl-accepting chemotaxis protein TERM 1349 1213957 - 1213989 + r 95 -14.2 -3.29144 | GTGACCGACCGTGGT TGAGGGGACCCTGG CTGAC CCAGGGTCGTCTCA TTGTGCAACAAATAA TERM 1350 1214028 - 1214007 - R 83 -5.1 -5.09762 | gap 1, overlap 1214020 GTGCAACAAATAAAA GCGCTACAGC GAA GCTG-AGTGC GCCATATTTGGCACG Avi_1440 1214635 - 1214057 - | hypothetical protein rpoZ 1214947 - 1215345 + | DNA-directed RNA polymerase omega subunit TERM 1351 1215406 - 1215431 + F 100 -9.7 -5.45802 | overlap 1215427 TCTTTCAAACTCTCT GTGCGTCAATC GGAA GGTTGGCGCGC TTTTTCTTTTGAGAG TERM 1352 1216706 - 1216742 + G 78 -11.5 -3.71645 | CACTCCGAAGGGCAA GTTGATCGCCCTGCCGC GCG GCGCCACGCCGATCGAC TTTGCCTATGCCGTT Avi_1443 1215504 - 1217744 + | GTP pyrophosphohydrolases/synthetases RelA/SpoT family Avi_1445 1218046 - 1218198 + | hypothetical protein TERM 1353 1218714 - 1218702 - f 74 -7.7 -4.11838 | opp_overlap 1218701 AAACGACTAGAGAAA CGTCA GAC TGACG AATTATGAAAGAGAC TERM 1354 1219445 - 1219455 + G 71 -6.8 -4.18702 | TGGCCGTCCAATATG CGGT GGG ACCG TTTGTTCAAGGTTGT lepB 1218734 - 1219477 + | signal peptidase I TERM 1355 1219539 - 1219516 - g 83 -8 -4.70626 | opp_overlap 1219516 GAAGAACGCGAAAAA GTGGAGGCCG TGAT CGGCTACCAC TTTATTGGCAAGGAA TERM 1356 1219516 - 1219539 + G 82 -10.2 -4.15044 | opp_overlap 1219516 GAAGAACGCGAAAAA GTGGAGGCCG TGAT CGGCTACCAC TTTATTGGCAAGGAA TERM 1357 1219640 - 1219664 + G 80 -9.3 -4.17958 | TCCTGGGCGACCGGG TGCTTGGCC TTTGCGT GGCCGAGCA TTTGTTCAAGGTGTT TERM 1358 1220184 - 1220161 - g 75 -9.6 -3.81488 | gap 1 TTGCTGGAAAGAGAA GGCGTGTGGAC GAG ATCCAC-CGCC TCAGATTGATTGGAT rnc 1219474 - 1220193 + | ribonuclease III era 1220204 - 1221187 + | GTP-binding protein Era Avi_1451 1222408 - 1221200 - | hypothetical protein TERM 1359 1221746 - 1221719 - G 90 -6.9 -5.14965 | gap 1, opp_overlap 1221718, overlap 1221724 AGTTTCAGGAAAAAA CACCAGGGGCGG CGGCT CCGCTCC-GGCG ATATTGAAGACGAAG TERM 1360 1222247 - 1222277 + g 76 -4.7 -4.82154 | gap 2, overlap 1222250 GGATGGAAGCGCTGT CAGCCGACCATCGCC CAA GGCGG-GTTCGG-TG TTTTTCGTGTCCATT TERM 1361 1223179 - 1223190 + Gr 75 -7.2 -4.30995 | CCTGCAACAGGCCTT CCGG CTGA CCGG TTATTTTCTACAAAG TERM 1362 1223250 - 1223219 - gR 77 -11.6 -3.1637 | gap 1, opp_overlap 1223219 1223216 AGACATGTGTATGAA CCGCGCG-GGCTC ACGGCTG GAGCCGCGCGCGA TGGTTTCTGTCAGGC Avi_1453 1223529 - 1223260 - | hypothetical protein recO 1222547 - 1223341 + | DNA repair protein RecO TERM 1363 1223716 - 1223737 + Tr 89 -14.5 -2.52676 | overlap 1223712 TACCTCCTTGCCAGG GAGCCGGTT ATGG AACCGGCTC TAGATTGAACACGTG TERM 1364 1223880 - 1223866 - TR 71 -2.9 -4.8622 | CGCTCCAATCAAAAA CAAAA TATAT TTTTG TGATCGATTGAATAT Avi_1456 1224905 - 1224054 - | hypothetical protein TERM 1365 1224845 - 1224868 + g 72 -4.4 -4.58395 | gap 1, overlap 1224845 1224846 GACGAATGTCGGCTT G-GCCCAGGGC GAT GCCCCGCGCGC TTTTTAAAGGATAGA Avi_1457 1225611 - 1224910 - | hypothetical protein TERM 1366 1225324 - 1225351 + g 74 -7.7 -4.18018 | overlap 1225333 CTTTGCGGCAAGGCG GGACGCATCCG CACGGT TGGGTGCGTTC TTTTCCATGGAGACG Avi_1459 1225915 - 1226535 + | hypothetical protein Avi_1460 1227287 - 1226751 - | hypothetical protein TERM 1367 1226814 - 1226828 + g 77 -2.1 -5.14563 | gap 1 ATTGCCATCGGCGTC CT-GGC CACG GCCTAG TTTTTTCATCGCCGC TERM 1368 1227099 - 1227113 + g 71 -10 -3.53091 | opp_overlap 1227109, overlap 1227112 ATGCACATCTTGCGG GGCGAT GAG ATCGCC TTTACCGGCAAAGGT TERM 1369 1227294 - 1227304 + r 82 -2.4 -5.4588 | ATAGCTCATGGCGCA CCCG TAC CGGA TTTTTTGTGATTTTC Avi_1461 1227931 - 1227284 - | hypothetical protein gcvT 1228772 - 1227933 - | glycine cleavage system T protein aminomethyltransferase TERM 1370 1228892 - 1228927 + r 73 -11.4 -2.71791 | gap 1, overlap 1228891 TTGACGCCGTTTGCC TTGTC-GGGAAAAGC GGGTTGG GCTTTTCCCTGACAA CTTTAAGGCAAACAT Avi_1463 1229726 - 1228950 - | hypothetical protein TERM 1371 1229531 - 1229545 + g 72 -9.2 -3.67976 | TGTCGGTTGGCAGGC CCGGCT GCT GGCCGG TTTGCGGTTGCTGCC Avi_1464 1230001 - 1229744 - | hypothetical protein Avi_1465 1230550 - 1230101 - | hypothetical protein nudF 1231045 - 1230605 - | ADP-Ribose Pyrophosphatase Avi_1467 1231136 - 1231891 + | hypothetical protein Avi_1469 1231888 - 1232232 + | hypothetical protein pssA 1233240 - 1232332 - | phosphatidylserine synthase TERM 1372 1232662 - 1232638 - G 100 -14.3 -3.85909 | GGACGCAAAGGCAAA TCCGGGCGTGG CTT CCACACCCAGA AAGCCGAGATAGATC TERM 1373 1233013 - 1232984 - G 70 -4.9 -4.42653 | gap 1, overlap 1232985 1232986 ATGCCATCGAGAAAA GC-GGCGACCAGCA CCA TGCCGACCGCAAGC TCGAAACGTCCTTCG psd 1233976 - 1233278 - | phosphatidylserine decarboxylase TERM 1374 1233625 - 1233647 + g 71 -11.2 -3.26471 | opp_overlap 1233617 AGACAACCTGGCGGA TTGCGCCGCG TAC CGGGGCGCGA TTGATATGGACATCG Avi_1472 1235984 - 1234098 - | ABC transporter nucleotide binding/ATPase protein TERM 1375 1236082 - 1236061 - R 100 -11.5 -5.02476 | opp_overlap 1236063, overlap 1236063 AGAGGCGGCAAAAAA GAGGCGGCC CTGA GGCCGCCTT TGTTATGTGCTGATA TERM 1376 1236080 - 1236063 - R 100 -14.1 -4.13963 | opp_overlap 1236063, overlap 1236061 AGGCGGCAAAAAAGA GGCGGCC CTGA GGCCGCC TTTGTTATGTGCTGA TERM 1377 1236063 - 1236080 + r 100 -14.1 -4.41114 | opp_overlap 1236061 1236063 AGGCGGCAAAAAAGA GGCGGCC CTGA GGCCGCC TTTGTTATGTGCTGA TERM 1378 1236183 - 1236197 + r 81 -5 -5.10029 | GCTTGTGCTCCAGCA TCCATT TAC GATGGA TTTTTTCGGCTTCGT Avi_1474 1238154 - 1236163 - | hypothetical protein TERM 1379 1236371 - 1236345 - G 77 -12.2 -3.53563 | opp_overlap 1236336 AGACTCGCCGGGAAA TCTGCCAGAGCG TAT CGCCCCGGCGGA TGATCACCGCATTCT TERM 1380 1238294 - 1238279 - H 83 -10.4 -4.14739 | opp_overlap 1238271 TGACCCAGCTCAAAA CCGCAG ACCG CTGCGG TACTACGGACTTGGC TERM 1381 1238357 - 1238382 + H 78 -9.1 -3.89524 | GCATTTTGGTCCGAT CTCTTACATCC ATAA GGATTTAAGAG TTTATGCAGTAACGT TERM 1382 1238631 - 1238680 + G 76 -12.7 -3.01924 | opp_overlap 1238652 TCATGGCCTGCGCCT CGTCTATGGCGGCGGCACCAAGG GCAT CATGGGTGCCGTTGCCAGCGGCG TGTTGGACGCGGGTG Avi_1475 1238503 - 1239123 + | hypothetical protein Avi_1476 1240035 - 1239112 - | hypothetical protein TERM 1383 1239722 - 1239697 - G 73 -11.1 -3.46647 | gap 1, overlap 1239695 CGGATTGATGAAATA GCCAAGCGC-GG TAT CCAGCGCGTGGC CGGCACCGATGGCCC TERM 1384 1240008 - 1239981 - G 79 -7 -4.70879 | gap 1, opp_overlap 1239986, overlap 1239985 1239986 CCGAAAGCGCAAAAA GAAAGCCGCG-CA GGC TGTCGCGGTTCTC AGTCACTGGCGCTGC TERM 1385 1240004 - 1239985 - G 78 -4.2 -4.88293 | gap 1, opp_overlap 1239986, overlap 1239981 1239986 AAGCGCAAAAAGAAA GCCGCG-CA GGC TGTCGCGGT TCTCAGTCACTGGCG Avi_1477 1241798 - 1240182 - | isopropylmalate synthase protein TERM 1386 1241408 - 1241436 + g 77 -8.1 -4.36411 | overlap 1241432 CCGCAGCCACCACGG CCTTGACACTGTC GCG GATGGAGTCGAGG TTTTCCTCATTGGTG TERM 1387 1241600 - 1241612 + g 84 -2.6 -5.40072 | opp_overlap 1241587, overlap 1241599 ACGCCGTGAAGCGGG CGCG GCTGG TGCG TTTTTTTGAGAAAAA pip 1242787 - 1241822 - | proline iminopeptidase TERM 1388 1242549 - 1242574 + g 73 -11.9 -3.14132 | gap 1 GCGTCCAGATGGGCA TGCGGC-GTGGA TTT TCCACAGCCGCG TTGATCGAACAGGAC Avi_1480 1243274 - 1242780 - | hypothetical protein TERM 1389 1243047 - 1243032 - G 82 -6 -4.74706 | overlap 1243034 GGGAATATCGAAAAA CAGCGG TGTG CCGCAG GCGGCGCAAAAGCCG Avi_1482 1243738 - 1243271 - | hypothetical protein TERM 1390 1243503 - 1243516 + g 70 -3.7 -4.56597 | overlap 1243504 GGGTGTTGGTAGGTC AGCGG TGTG CCGCA TTTTTCGCAAAAGCC Avi_1483 1244223 - 1243735 - | hypothetical protein Avi_1484 1244652 - 1244227 - | hypothetical protein Avi_1485 1244894 - 1244649 - | SpoVT/AbrB family protein Avi_1486 1245374 - 1244985 - | Lactoylglutathione lyase cysS 1247270 - 1245504 - | cysteinyl-tRNA synthetase TERM 1391 1245683 - 1245693 + g 78 -3.2 -5.1287 | CGGCAGATAGATCAT TGGT CTC GCCA TTTTTTAGCTCTAGG TERM 1392 1245958 - 1245970 + g 73 -3.3 -4.79756 | AACATCTTTTCTGCT GCGTT GCT ATCGC TTTTTGCGTTCTCTC TERM 1393 1247230 - 1247220 - G 70 -4.6 -4.44819 | overlap 1247222 TACAAGAGACGAAAA CGGC CGG GCCA GCGAATGCGCTAGCG peh 1247490 - 1249124 + | Polygalacturonase/Pectinase rfbC 1249308 - 1249871 + | dTDP-4-dehydrorhamnose 3,5-epimerase rffB 1249926 - 1250984 + | dTDP-D-glucose-46-dehydratase rfbD 1250981 - 1251886 + | dTDP-4-dehydrorhamnose reductase Avi_1494 1251964 - 1252827 + | glucose-1-phosphate thymidylyltransferase TERM 1394 1252850 - 1252895 + F 82 -9.2 -4.1523 | gap 3, opp_overlap 1252839 1252858 1252860 AAACCGGACGCGTAT CTGCAATACAGCGCCACGCACCT GAG AGG-GTGTGGCGCTGTAA--CAG TTTATATATGCTGCA TERM 1395 1252889 - 1252858 - f 95 -15.2 -3.04144 | gap 1, opp_overlap 1252850, overlap 1252839 1252860 CGCGTATCTGCAATA CAGCGCCACGCACCT GAG AGG-GTGTGGCGCTG TAACAGTTTATATAT TERM 1396 1252887 - 1252860 - f 75 -12 -3.07895 | gap 1, opp_overlap 1252850, overlap 1252839 1252858 CGTATCTGCAATACA GCGCCACGCACCT GAG AGG-GTGTGGCGC TGTAACAGTTTATAT TERM 1397 1253828 - 1253846 + G 71 -7.3 -4.15044 | GATTGCCTGATCTGT CACCCGC AGGCG GCGGGGG TTTATTGCGACGAGG Avi_1495 1253108 - 1255006 + | glycosyltransferase protein Avi_1496 1255003 - 1256085 + | glycosyl transferase group 1/2 family protein Avi_1497 1256882 - 1256142 - | NAD/NADP dependent oxidoreductase TERM 1398 1256671 - 1256651 - G 78 -9.7 -4.08767 | CCCAGCGCTCGAAAA TCGATCCGC CCA GCGCATCGA TGGCGCCCATGTCGG purF 1258516 - 1256927 - | amidophosphoribosyltransferase TERM 1399 1258379 - 1258342 - G 71 -11.4 -3.30124 | gap 1, opp_overlap 1258308 1258339 CCTGATGGCCCAGAA TGCCGAACACGCCGCAT TCTTC ATGCAGCGTG-TCGCCA TCGAGGTCTTCAAGG cvpA 1259236 - 1258637 - | colicin V production protein ugdH 1260743 - 1259427 - | UDP-glucose 6-dehydrogenase galE 1261830 - 1260856 - | UDP-glucose 4-epimerase TERM 1400 1260989 - 1260969 - G 88 -14.7 -3.57144 | CGCCGGAGGCGTAAA GAGCTGGCG CAT CGCCAGCCC GCCTTGGCGCATATT TERM 1401 1261515 - 1261492 - G 74 -7.4 -4.26076 | GCAGGTCGAGGAAAA CACAATGGTG TCAA CGCCATTGCG GCGCATGGCATCCAA Avi_1505 1262822 - 1261827 - | dTDP-glucose 4-6-dehydratase radA 1264360 - 1262960 - | DNA repair protein TERM 1402 1263480 - 1263490 + g 90 -8.2 -4.87291 | opp_overlap 1263473 1263476, overlap 1263476 CCAGCAAACACCGCA GCGC CCG GCGC TTTTTCATTGCGCTC alr 1265651 - 1264488 - | alanine racemase TERM 1403 1265484 - 1265504 + g 85 -11.1 -4.07568 | GCCTGAATCCTCGAT GCCGATGCC GTA GCCATCGGC TTTTACCACGGCACC Avi_1509 1265738 - 1266592 + | transcriptional regulator AraC family Avi_1510 1267262 - 1266603 - | ABC transporter membrane spanning protein TERM 1404 1266922 - 1266952 + g 81 -11.8 -3.64703 | GCTTCCCACTGGCCT TTTGGCACGGCTTC GAC GCAGCCGCGCCAGA TTTCAGTCAGGAAAG Avi_1512 1267930 - 1267259 - | ABC transporter membrane spanning protein TERM 1405 1267991 - 1268016 + r 89 -13.3 -3.4178 | opp_overlap 1267991 ATCTGGCCTGCACAA TCACCTCAGCC ACAC GGCTGCGGTGA TTGTGCTGAAATGGT TERM 1406 1268016 - 1267991 - R 89 -13.3 -3.28791 | opp_overlap 1267991 ATCTGGCCTGCACAA TCACCTCAGCC ACAC GGCTGCGGTGA TTGTGCTGAAATGGT Avi_1513 1268833 - 1268051 - | ABC transporter substrate binding protein (amino acid) TERM 1407 1268913 - 1268895 - R 100 -11.7 -4.68593 | opp_overlap 1268894 1268889 GCCACTATGCAAAAA GCCGCCT GGAAA AGGCGGC CCTTGGTTCTGTCTG dnaB 1270478 - 1268982 - | replicative DNA helicase TERM 1408 1270686 - 1270704 + r 100 -16 -3.1082 | opp_overlap 1270686 ATCCGCACAAAAAAA CGCCCGGA AAA TCCGGGCG TCTCTTCAATCGATA TERM 1409 1270704 - 1270686 - R 100 -16 -5.61596 | opp_overlap 1270686 ATCCGCACAAAAAAA CGCCCGGA AAA TCCGGGCG TCTCTTCAATCGATA rplI 1271307 - 1270732 - | 50S ribosomal protein L9 Avi_1518 1272368 - 1271367 - | hypothetical protein TERM 1410 1272494 - 1272470 - R 84 -13.6 -2.52896 | gap 1 CCATCGCGGAAGGGA GACGGCTCCCG AAAA CGGGAGCCG-C AAAGTCACGTCAGCT rpsR 1272762 - 1272514 - | 30S ribosomal protein S18 rpsF 1273236 - 1272775 - | 30S ribosomal protein S6 TERM 1411 1272861 - 1272918 + g 78 -14.8 -2.62463 | overlap 1272861 1272916 GATCACCACGATCAC CGCGGTCGCCACGATCCGGACG-GTCGC CATC GCGGCGCGGACGG-TCGTCGCGGTCGCG CTTCTGCATCATGGC Avi_1523 1274936 - 1273881 - | extracellular metalloprotease precursor protein TERM 1412 1274466 - 1274448 - G 85 -10.2 -4.36914 | GGCGCTCTCACAAAA CGGGGTGA AAA TCTCCCCG TCGCCATCGCCATAG rzcA 1275984 - 1275079 - | rhizobiocin/RTX toxin TERM 1413 1276117 - 1276096 - R 100 -10.1 -5.26875 | opp_overlap 1276094 1276096 CGGTTAACGAAAAAA GGGGCAGGA TATC TCCCACCCC TATGTGTATTCTTGG Avi_1526 1277196 - 1276153 - | aldo/keto reductase TERM 1414 1277981 - 1277967 - g 86 -8.5 -4.65895 | CTTGCGATGGAAAAA GGCGC CAAGC GCGCC ATCATGCTGCCAGTC fabD 1277403 - 1278347 + | malonyl CoA-acyl carrier protein transacylase fabG 1278479 - 1279216 + | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 1415 1279461 - 1279483 + F 75 -5.5 -4.66938 | GGCGCAAAACAGGGT GGGAACGTC ATCAC GGCATTCCC TTTTATATTAGAGGT acpP 1279512 - 1279748 + | acyl carrier protein fabF 1279992 - 1281254 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1416 1281422 - 1281388 - f 77 -6.5 -4.60487 | gap 1, overlap 1281390 1281392 1281393 GACCAGTCGGAAAAA TAGATCCCCTGCCTTT TCTG AAAGGCAGGGG-TAGA GTATGAAGCTCTGCC TERM 1417 1281420 - 1281390 - f 78 -9.1 -3.91506 | gap 1, overlap 1281388 1281392 1281393 CCAGTCGGAAAAATA GATCCCCTGCCTTT TCTG AAAGGCAGGGG-TA GAGTATGAAGCTCTG TERM 1418 1281419 - 1281392 - f 95 -14.2 -3.54256 | overlap 1281390 1281388 1281393 AGTCGGAAAAATAGA TCCCCTGCCTTT TCTG AAAGGCAGGGGT AGAGTATGAAGCTCT TERM 1419 1281418 - 1281393 - f 100 -17.7 -2.71831 | overlap 1281392 1281390 1281388 GTCGGAAAAATAGAT CCCCTGCCTTT TCTG AAAGGCAGGGG TAGAGTATGAAGCTC Avi_1532 1281588 - 1282832 + | hypothetical protein Avi_1534 1282888 - 1283778 + | hypothetical protein gmk 1283782 - 1284444 + | guanylate kinase TERM 1420 1284839 - 1284874 + G 79 -5.4 -4.78764 | gap 1, overlap 1284839 1284840 1284869 CACCTATGTCGGTGA C-GTGATGCGACCGCAG CCG CTGCCGTCGGATTGCCG TTTTTCGTCAATTTC Avi_1536 1284507 - 1285193 + | hypothetical protein ksgA 1286049 - 1285222 - | rRNA-adenine N6N6-dimethyltransferase pdxA 1287089 - 1286049 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1421 1286627 - 1286637 + g 71 -8.2 -4.07568 | CAGGCATGACCGGGT GGCC TGT GGCC TTTTCGGCAAGAGCG TERM 1422 1286710 - 1286680 - G 100 -14.8 -4.12188 | opp_overlap 1286685, overlap 1286685 GTATGACCTGGAAAA CCAAATCCGCCCTC ATA GAGCACGGATTTGG CGACGGGATTGGTCA TERM 1423 1286705 - 1286685 - G 71 -7.5 -4.20136 | opp_overlap 1286685, overlap 1286680 ACCTGGAAAACCAAA TCCGCCCTC ATA GAGCACGGA TTTGGCGACGGGATT TERM 1424 1287013 - 1286973 - G 88 -14.8 -3.50335 | gap 2, opp_overlap 1286987, overlap 1286969 1286967 GCCCAGAAACAGGAA TGGCGGCA-GGTCGA-GCGC CTT GCGCTTCGTCCATGCCACCA AGGCGATATCCGGGC Avi_1539 1288045 - 1287098 - | hypothetical protein TERM 1425 1287518 - 1287508 - G 74 -6.8 -4.35682 | opp_overlap 1287507 1287505 1287500 1287508 GTACAACGAAAATAA CCTG TTT CAGG GTGTATTCTGTCGTC TERM 1426 1288018 - 1287996 - G 86 -12 -4.08485 | GTCACGCAAACCAAA GCCACCGTTG CAA CAACAGCGGC GCGCAAAGTTTTATT TERM 1427 1288204 - 1288152 - R 82 -11.7 -3.53012 | gap 1, overlap 1288153 1288194 TTTTTTCCCGGTAAA CTCTGCTGCATAATTTCTTAAATC GGCAAT GATTCAAAGAATTATGCAGCAG-G CACAGCATATTGGAG TERM 1428 1288204 - 1288153 - R 73 -11.9 -2.71712 | overlap 1288152 1288194 TTTTTCCCGGTAAAC TCTGCTGCATAATTTCTTAAATC GGCAAT GATTCAAAGAATTATGCAGCAGG CACAGCATATTGGAG TERM 1429 1288526 - 1288483 - R 100 -6.7 -5.46706 | opp_overlap 1288483 1288481 1288484, overlap 1288484 ATGTGAAAATAAAAA CCAATAGCATCGTGCCGAA TCCAGT CTCCGCCCGGTGCTATTGA TATTTTGGATCAATA TERM 1430 1288525 - 1288484 - R 72 -8 -3.86397 | opp_overlap 1288484 1288483 1288481, overlap 1288483 TGTGAAAATAAAAAC CAATAGCATCGTGCCGAA TCCAGT CTCCGCCCGGTGCTATTG ATATTTTGGATCAAT TERM 1431 1288582 - 1288547 - R 73 -11.8 -2.63348 | opp_overlap 1288547, overlap 1288542 1288546 TGGATCAATAGGAAC GTGGCCCGCCGCTTTC CAGG GAAAACAGCGGGCGTC TAAAGGCGAGACAGA ostA 1290931 - 1288598 - | organic solvent tolerance protein TERM 1432 1288967 - 1288979 + g 74 -7.7 -4.25104 | CGAATCCGTCCGCGC GACCT CAA AGGTC TTTTCATCGAACCGC Avi_1542 1292019 - 1290931 - | hypothetical protein Avi_1543 1293215 - 1292016 - | hypothetical protein TERM 1433 1292737 - 1292755 + g 86 -5.2 -5.1675 | overlap 1292738 TGCACATAAAGGCCG TCTTCCAC CTT GCGGAAGG TTTTTTCCTCGATCA Avi_1544 1294262 - 1293327 - | hypothetical protein TERM 1434 1294957 - 1294935 - g 72 -5.5 -4.51224 | AAGACGAAGAAGAAA GACGATGAC GATAA GGCACCGTC CGCAGTCCAGATCAC TERM 1435 1295815 - 1295801 - g 75 -4.2 -4.8048 | opp_overlap 1295803 CGCCGATATGAAAAA TACTGG TGG CCGGTA TGGTGGTTCGATCAC pepA 1294503 - 1295996 + | cytosol aminopeptidase Avi_1546 1296011 - 1296460 + | hypothetical protein TERM 1436 1296549 - 1296580 + T 70 -10.2 -3.14132 | opp_overlap 1296547 1296552 1296554, overlap 1296552 1296554 TGACCGCTTGAAACG AGATATTGACGCGG TTTC CCGCGTCAATATGA TTGGTGGGACGCAGG TERM 1437 1296552 - 1296577 + T 100 -16.3 -2.77899 | opp_overlap 1296552 1296547 1296554, overlap 1296549 1296554 CCGCTTGAAACGAGA TATTGACGCGG TTTC CCGCGTCAATA TGATTGGTGGGACGC TERM 1438 1296577 - 1296552 - T 100 -16.3 -3.00525 | opp_overlap 1296549 1296552 1296554, overlap 1296547 1296554 CCGCTTGAAACGAGA TATTGACGCGG TTTC CCGCGTCAATA TGATTGGTGGGACGC TERM 1439 1296575 - 1296554 - T 93 -14.5 -3.05769 | opp_overlap 1296552 1296549 1296554, overlap 1296552 1296547 GCTTGAAACGAGATA TTGACGCGG TTTC CCGCGTCAA TATGATTGGTGGGAC TERM 1440 1296554 - 1296575 + T 90 -14.5 -2.93723 | opp_overlap 1296554 1296552 1296547, overlap 1296552 1296549 GCTTGAAACGAGATA TTGACGCGG TTTC CCGCGTCAA TATGATTGGTGGGAC mcpA 1298513 - 1296606 - | methyl-accepting chemotaxis protein TERM 1441 1297948 - 1297977 + g 72 -6.3 -4.2828 | opp_overlap 1297937 1297935 1297934 1297966, overlap 1297949 ACCAGGCCATTCAGC AGCAGCGACAGCT GAAA GGCTGATGCTGCA TTTTCATACATGCGG TERM 1442 1298673 - 1298661 - R 77 -6.2 -4.62471 | AATGGATATATAAAA GCCG GAGAG CGGC TGAACCTGCTGACAG Avi_1549 1301046 - 1299127 - | ABC transporter nucleotide binding/ATPase protein TERM 1443 1299313 - 1299337 + g 78 -2.9 -5.11063 | TGTCTCCAGTTTCTT GGTCAATGA TTCGATT TCGTTGATC TTTTTCTTCAGTGGT TERM 1444 1299410 - 1299425 + g 100 -3.2 -5.80727 | overlap 1299404 1299412 GCTTTTTTCCCGGCT TCGACG GTTA CGTCAA TTTTTTCTTCTTTTT ligE 1301170 - 1301850 + | lignin degradation protein ndk 1301981 - 1302379 + | nucleoside diphosphate kinase TERM 1445 1302488 - 1302431 - T 100 -12.9 -4.68919 | gap 1, opp_overlap 1302437 1302440 1302475 1302481, overlap 1302434 1302439 1302440 AAAGACAAACGAAAA CAAGAGAATCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGGCTCTAGGC-CTCTTC GAGGCTTTTACTTTG TERM 1446 1302485 - 1302434 - T 100 -14.6 -4.40882 | gap 1, opp_overlap 1302437 1302440 1302475 1302481, overlap 1302431 1302439 1302440 GACAAACGAAAACAA GAGAATCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGGCTCTAGGC-CTC TTCGAGGCTTTTACT TERM 1447 1302437 - 1302483 + T 87 -13.8 -3.06009 | opp_overlap 1302434 1302431 1302439 1302440, overlap 1302440 1302475 1302481 AAACGAAAACAAGAG AATCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGGCTCTAGGCC TCTTCGAGGCTTTTA TERM 1448 1302481 - 1302439 - T 100 -16.4 -3.97437 | opp_overlap 1302437 1302440 1302475, overlap 1302434 1302431 1302440 ACGAAAACAAGAGAA TCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGGCTCTAGG CCTCTTCGAGGCTTT TERM 1449 1302480 - 1302440 - T 100 -19.9 -2.96836 | opp_overlap 1302440 1302437 1302475, overlap 1302439 1302434 1302431 CGAAAACAAGAGAAT CTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGGCTCTAG GCCTCTTCGAGGCTT TERM 1450 1302481 - 1302493 + T 90 -9.1 -4.54727 | opp_overlap 1302434 1302431, overlap 1302437 1302475 CCTGACAGGCTCTAG GCCTC TTC GAGGC TTTTACTTTGAAGAG TERM 1451 1302541 - 1302522 - T 81 -6.3 -4.81685 | opp_overlap 1302522 AGCAACTATCAAAAA CCGGGGC TGAGAG GCTCCGG TTTTTTTATGTCCAC TERM 1452 1302522 - 1302541 + T 100 -9.2 -5.71712 | opp_overlap 1302522 AGCAACTATCAAAAA CCGGGGCT GAGA GGCTCCGG TTTTTTTATGTCCAC moaE 1303005 - 1302547 - | molybdopterin converting factor large subunit Avi_1555 1303267 - 1303010 - | molybdopterin converting factor subunit 1 pgsA 1303854 - 1303264 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase uvrC 1306039 - 1303967 - | excinuclease ABC C subunit TERM 1453 1305314 - 1305338 + g 70 -12.2 -2.8552 | gap 1, overlap 1305313 1305316 CTTGGCTTCCTTCAC CAGC-ACGCCG TAAT CGGCGTCGCTG ATTTCATGGGTGCAG Avi_1559 1306815 - 1306036 - | dehydrogenase TERM 1454 1306311 - 1306323 + g 74 -7.7 -4.13728 | opp_overlap 1306285 TGGTTCTCGTCGCCG TCCAC AGG GTGGA TTTTGACAATGTATA TERM 1455 1306915 - 1306933 + H 77 -6 -4.68103 | overlap 1306905 1306916 CATGGCGCGACTTAT TGAAGGTC AGC GATCTTCG TTTTCTTCACCTTGA ropB 1307228 - 1307866 + | outer membrane protein TERM 1456 1307916 - 1307891 - T 100 -16.2 -3.60296 | opp_overlap 1307891 1307894, overlap 1307894 TATTGTGATCTGAAA GAAGCCCGGC CTTAGC GCCGGGCTTC TTGATTCTGGGAAGG TERM 1457 1307891 - 1307916 + T 100 -16.2 -3.44146 | opp_overlap 1307891 1307894, overlap 1307894 TATTGTGATCTGAAA GAAGCCCGGC CTTAGC GCCGGGCTTC TTGATTCTGGGAAGG TERM 1458 1307894 - 1307913 + T 93 -12.1 -3.8591 | opp_overlap 1307891 1307894, overlap 1307891 TGTGATCTGAAAGAA GCCCGGC CTTAGC GCCGGGC TTCTTGATTCTGGGA TERM 1459 1307913 - 1307894 - T 93 -12.1 -3.9392 | opp_overlap 1307894 1307891, overlap 1307891 TGTGATCTGAAAGAA GCCCGGC CTTAGC GCCGGGC TTCTTGATTCTGGGA Avi_1562 1308550 - 1307954 - | glutathione S-transferase related protein Avi_1564 1309434 - 1308583 - | hypothetical protein TERM 1460 1310119 - 1310109 - g 79 -6.8 -4.56597 | opp_overlap 1310115 GGCGGCCCGCAAAAA TCGC GGC GCGA AAATCGTCGTTGTCG TERM 1461 1310430 - 1310449 + G 75 -10 -3.6682 | gap 1 CGGCTATGGTTTTAC CCGCAGCCG TAA CGG-TGCGG TTTCCATGCATGCCG TERM 1462 1311202 - 1311220 + G 71 -8 -4.09685 | CTGGGGTCTCTGGGG CCGGTGGC CGC GCTTCCGG TTTTCCCCGATCAGA Avi_1565 1309510 - 1311624 + | reductase Avi_1566 1311621 - 1312205 + | NTP pyrophosphohydrolase MutT family TERM 1463 1312261 - 1312293 + F 75 -12 -3.05819 | overlap 1312268 1312269 TCATCGTTTTGAGGG GCCGGGAGGACGCA AGACC TGCGTCATTCTGGC TCTTGCGCCTCTATC Avi_1568 1312321 - 1313640 + | metallo-beta-lactamase superfamily protein Avi_1569 1313634 - 1313978 + | transcriptional regulator ArsR family Avi_1570 1313975 - 1314385 + | hypothetical protein Avi_1572 1314382 - 1314816 + | hypothetical protein TERM 1464 1315251 - 1315262 + G 79 -7.2 -4.62471 | overlap 1315246 1315245 GCGCTGGTATCGGGT GCCG CCTC CGGC TTTTTCGGGATTGGC TERM 1465 1315520 - 1315505 - g 70 -2.5 -4.82901 | CGGCGCGCATAAAAA CACCC TCAACC GGATG TTTGCGGCGATGGTT Avi_1573 1314813 - 1315592 + | hypothetical protein purN 1316271 - 1315582 - | phosphoribosylglycinamide formyltransferase TERM 1466 1316003 - 1316019 + g 82 -13.7 -3.21595 | opp_overlap 1315980 1315964 TGTACCTGATCCAGC GCCGCCA GAA TGGCGGC TTCGTGGTCAGCCTT garS 1317341 - 1316268 - | 5prime-phosphoribosyl-5-aminoimidazole synthetase TERM 1467 1316502 - 1316487 - G 81 -9 -4.29738 | CGACAGCCACGAAAA CACGGT GGGA ACCGTG ATCGACGCGAGGTCG TERM 1468 1317421 - 1317435 + H 78 -5.6 -4.86773 | overlap 1317414 GATGCAAGCGCAAGG GCCGGA AAC TCCCGC TTTTTCGTCGTTTTC TERM 1469 1317674 - 1317689 + G 84 -6.8 -4.74801 | overlap 1317670 CGGCATCGGCACGCT GGCGGT GGTC ATCGCC TTTTTGCTGACCTTC Avi_1577 1317612 - 1318751 + | permease Avi_1578 1318752 - 1319474 + | hypothetical protein TERM 1470 1319570 - 1319599 + F 100 -12.9 -4.03234 | TTATCGGGTGGAAGG GGCTGGTGCATCA TGGA TGATGCGCCAACC TTTATATGCCGGAAG ppk 1319582 - 1321843 + | polyphosphate kinase TERM 1471 1323042 - 1323057 + G 70 -3.9 -4.7173 | GCTTGCAGAGTGGTC CGGCG CGATGA TGCCG TTTTTCGATGTCGTG TERM 1472 1323098 - 1323112 + G 71 -11.4 -3.30771 | overlap 1323084 AGGAGGCTCGCTATC GGCAGG CCG CCTGCC TTCTGGCCGATCTGA ppx 1322020 - 1323540 + | exopolyphosphatase Avi_1583 1324052 - 1323561 - | transcriptional regulator LysR family TERM 1473 1323741 - 1323758 + g 73 -3.3 -4.83615 | overlap 1323734 1323743 AGTCTCGTGCCGCTC CCGGCTT TCCC GAGCCAG TTTTTCTCCGGCCTG mntH 1324330 - 1325691 + | manganese transport protein Avi_1585 1326694 - 1325675 - | hypothetical protein TERM 1474 1325879 - 1325843 - G 74 -7.1 -4.4009 | opp_overlap 1325863, overlap 1325844 TGCCAGCGCATAAAA GCACCAGGCCCGGCTGA GGT TCAGCCCGTCCAGATGG GCGATCTTGCCATCG Avi_1586 1327671 - 1326694 - | hypothetical protein Avi_1587 1328179 - 1327727 - | hypothetical protein rnd 1329375 - 1328221 - | ribonuclease D Avi_1589 1331023 - 1329611 - | cu-oxidase multicopper oxidase protein TERM 1475 1329688 - 1329676 - G 74 -6.9 -4.27316 | opp_overlap 1329676, overlap 1329680 TGTGGCAATGCAAAA CCCAG TCG CCGGG ATTGTCGGCCACCAA Avi_1591 1332346 - 1331111 - | MFS permease TERM 1476 1333600 - 1333571 - g 88 -15.7 -3.16267 | opp_overlap 1333576, overlap 1333575 GTCAAGCACACGGAA GCAACCGGCGCGA TTGG CCGCGCCGTTTGC GACCGCATGAATGCC TERM 1477 1333576 - 1333595 + G 77 -12.1 -3.53444 | opp_overlap 1333575 1333571 GCACACGGAAGCAAC CGGCGCG ATTGGC CGCGCCG TTTGCGACCGCATGA TERM 1478 1333936 - 1333924 - g 73 -3.4 -4.72497 | GAGCGAGGAAGAAAA GAAG ATCGA CTTC GCCCACAACCCGTTC Avi_1592 1332566 - 1334371 + | aspartyl-tRNA synthetase TERM 1479 1334421 - 1334452 + G 100 -27.4 -4.91109 | GATGCCTTCAGCCAC GCGACCGCCGCAGC TTTA GCTGCGGCGGTCGC TTTTTATGGTGCCCA TERM 1480 1334476 - 1334493 + G 70 -4.1 -4.57569 | overlap 1334470 1334469 GTGCCCACTGGCTGT TCGGC CACCAGCA GCCGA TTTTTGCCGCCATAG Avi_1593 1334376 - 1334906 + | hypothetical protein TERM 1481 1334934 - 1334960 + T 85 -13.8 -2.75975 | opp_overlap 1334939, overlap 1334939 TAACGCATTCCACAA AAAAAGCCGCCA GTC TGGCGGCTTTTA TCGTCTATGTTCGAG TERM 1482 1334955 - 1334939 - T 100 -13.7 -5.626 | opp_overlap 1334934 1334939 CATTCCACAAAAAAA GCCGCCA GTC TGGCGGC TTTTATCGTCTATGT TERM 1483 1334939 - 1334955 + T 100 -13.7 -4.53765 | opp_overlap 1334939, overlap 1334934 CATTCCACAAAAAAA GCCGCCA GTC TGGCGGC TTTTATCGTCTATGT Avi_1594 1336210 - 1334987 - | hypothetical protein TERM 1484 1335948 - 1335988 + g 72 -9.5 -3.68619 | overlap 1335949 CTCATTTTCACGTCG CCGATGGAGACTGGCGCGG CAT CCGGGCCGGTATCCGACGC TTTGGCTGGCTTCAG TERM 1485 1335949 - 1335987 + g 73 -13 -2.8085 | overlap 1335948 TCATTTTCACGTCGC CGATGGAGACTGGCGCGG CAT CCGGGCCGGTATCCGACG CTTTGGCTGGCTTCA parC 1336410 - 1338686 + | DNA topoisomerase IV A subunit TERM 1486 1338691 - 1338731 + T 72 -9.7 -3.37091 | gap 1, overlap 1338720 TCAGCGGCTGATTGC CCGTTTCGTCCTGCGCAC CATGTA GTGCGCAGGACCGC-CGG TTCCGTTTTGCCAAT TERM 1487 1338794 - 1338838 + T 77 -8.6 -4.08958 | opp_overlap 1338795 1338800 1338815, overlap 1338795 AGAAACGTTGAATGC ACTAGAGCATCGGACCGA AAATAGGAA TCGGAACGATGCTCTAGG TTCTTGTTTAGGCAT TERM 1488 1338837 - 1338795 - T 76 -12.1 -2.54387 | opp_overlap 1338795 1338794, overlap 1338800 1338815 GAAACGTTGAATGCA CTAGAGCATCGGACCGA AAATAGGAA TCGGAACGATGCTCTAG GTTCTTGTTTAGGCA TERM 1489 1338795 - 1338837 + T 79 -12.1 -3.04652 | opp_overlap 1338795 1338800 1338815, overlap 1338794 GAAACGTTGAATGCA CTAGAGCATCGGACCGA AAATAGGAA TCGGAACGATGCTCTAG GTTCTTGTTTAGGCA Avi_1597 1340921 - 1338897 - | GGDEF family protein TERM 1490 1339880 - 1339903 + g 86 -6 -5.02476 | gap 1 CGTTGATGCCATCCT TG-CGCTGATC ATG GACCAGCGACA TTTTTTCCACGGTAT TERM 1491 1341349 - 1341330 - g 82 -10 -4.23045 | overlap 1341344 TAACGATGGAAGAAA CAGCGATC TCAA GACCGCTG AGGCAGAACTTGCGA Avi_1598 1341232 - 1342278 + | hypothetical protein TERM 1492 1342457 - 1342490 + F 100 -16.9 -4.18018 | overlap 1342461 1342488 ACTGGTTGTGGTTCC CCAAGCCCAGAATTC TTCT GAATTCTGGGCTTTG TTTTGCATGAAAACA TERM 1493 1342461 - 1342486 + F 100 -16.3 -4.68908 | overlap 1342457 GTTGTGGTTCCCCAA GCCCAGAATTC TTCT GAATTCTGGGC TTTGTTTTGCATGAA Avi_1600 1342748 - 1344532 + | GGDEF family protein TERM 1494 1344630 - 1344594 - T 95 -14 -3.54741 | gap 1, opp_overlap 1344592 1344606 GAGGAGGCTGCCAAA GGCATACGAAGAGTAAT CTTT ATTACTCTTCG-ACGCC GCTCTCTGGCTCATA Avi_1601 1345377 - 1344616 - | arginine-tRNA-protein transferase TERM 1495 1345533 - 1345491 - R 70 -10.1 -3.14931 | CTCACCTTGCAGGAA TTTCGAATATCTCAAATGC ATCAA GTGCTTGAGATATTCGAAA GTGCAATGCCAGAAG Avi_1602 1346171 - 1345713 - | hypothetical protein hemB 1347307 - 1346294 - | delta-aminolevulinic acid dehydratase Avi_1604 1347490 - 1347927 + | hypothetical protein mucS 1348076 - 1348588 + | exopolysaccharide II synthesis transcriptional activator ExpG TERM 1496 1350302 - 1350292 - g 71 -6.8 -4.25104 | TGGCGTGGAGCAAAA TCCG GGC CGGA TTGAGGACGACAATT Avi_1609 1349096 - 1350328 + | hypothetical protein TERM 1497 1350328 - 1350344 + F 71 -2.9 -4.82901 | opp_overlap 1350329, overlap 1350329 CAATTTGCCGCAGTA AGTCTTG GCA CAAGGCA TTTTTATCAAGGGCC TERM 1498 1350379 - 1350355 - f 70 -9.9 -3.15663 | opp_overlap 1350356 AGGCATTTTTATCAA GGGCCGCGC TCAAGTT GCGCGGCCT TTTGTGTTTTTACGC TERM 1499 1350356 - 1350378 + F 100 -13.4 -4.98672 | opp_overlap 1350355 GGCATTTTTATCAAG GGCCGCGC TCAAGTT GCGCGGCC TTTTGTGTTTTTACG glyA 1350531 - 1351820 + | serine hydroxymethyltransferase Avi_1612 1351830 - 1352306 + | hypothetical protein ribD 1352309 - 1353409 + | bifunctional riboflavin deaminase-reductase ribc 1353406 - 1354020 + | riboflavin synthase alpha chain TERM 1500 1354073 - 1354045 - T 84 -7.4 -4.63218 | gap 1, overlap 1354046 CGCTTTGTAAGAAAA GGCGGAAGG-GCC GGGC AGCTCCTTCCGCA CATATCCATCAAGCC TERM 1501 1354072 - 1354046 - T 76 -10.9 -3.3761 | gap 1, overlap 1354045 GCTTTGTAAGAAAAG GCGGAAGG-GCC GGGC AGCTCCTTCCGC ACATATCCATCAAGC Avi_1616 1354459 - 1354082 - | hypothetical protein ribH 1354990 - 1355448 + | 6,7-dimethyl-8-ribityllumazine synthase nusB 1355453 - 1355935 + | transcription antitermination factor NusB TERM 1502 1356780 - 1356792 + G 70 -4.1 -4.56597 | GCATGTCATCGCCAT GTTTG CGC CAAGC TTTTTCACCGGACGG Avi_1621 1355962 - 1357188 + | MFS permease TERM 1503 1358245 - 1358268 + G 72 -4.5 -4.63218 | overlap 1358244 ATGCGGTCTCCGTGG TTGCCACCA TGGTGC TGGCGGCGA TTTTCTTCGCAGGCA TERM 1504 1358633 - 1358607 - g 85 -10.8 -4.32951 | ACCGGAACCAACAAA CGCCCGGTCAAT TCC ATCGCCCAGGCG TCGGTGACTGGTCAC Avi_1622 1357527 - 1359665 + | V-type H(+)-translocating pyrophosphatase TERM 1505 1359728 - 1359687 - T 100 -16.7 -3.11072 | opp_overlap 1359697, overlap 1359697 CTGATCCAACATAGA CATAGAAAAACCCGCGACC GTGA GGCCGCGGGTTTTTGTTTG ATATCGAGGCTCTGC TERM 1506 1359718 - 1359697 - T 100 -15.1 -5.08178 | opp_overlap 1359697, overlap 1359687 ATAGACATAGAAAAA CCCGCGACC GTGA GGCCGCGGG TTTTTGTTTGATATC TERM 1507 1359697 - 1359718 + T 100 -12.9 -5.35815 | opp_overlap 1359697 1359687 ATAGACATAGAAAAA CCCGCGACC GTGA GGCCGCGGG TTTTTGTTTGATATC Avi_1624 1360436 - 1359744 - | hypothetical protein Avi_1626 1360585 - 1361139 + | hypothetical protein Avi_1627 1361136 - 1361699 + | hypothetical protein TERM 1508 1361791 - 1361774 - f 77 -8.5 -4.07885 | TATTTTGGCCGAAAA TTTCACC TGGG GGTGAAA AAGAAGGGATTAAGA plsX 1361834 - 1362877 + | fatty acid/phospholipid synthesis protein PlsX TERM 1509 1363571 - 1363557 - g 71 -10 -3.57561 | opp_overlap 1363564 1363565 CGTGAAGTCTTCAAA CATGCC GTC GGCATG ATCGCCGATGTGATC fabH 1362897 - 1363868 + | 3-oxoacyl-(acyl-carrier-protein) synthase III ihfA 1363966 - 1364304 + | integration host factor alpha subunit Avi_1633 1364498 - 1365043 + | hypothetical protein Avi_1634 1365608 - 1365156 - | hypothetical protein Avi_1635 1365718 - 1366509 + | hypothetical protein exsG 1367090 - 1368118 + | two component sensor kinase TERM 1510 1368217 - 1368193 - T 80 -5.7 -4.88295 | AAAGAAAGTCAAAAA CTCTAAGTGAA CCT TGCTCTTAGAG CGGGTCGGGGCGTAG Avi_1637 1368796 - 1368272 - | integrase TERM 1511 1368451 - 1368483 + g 70 -12 -2.78384 | gap 1, overlap 1368480 1368481 CGCGGAGGTTTGACG CGCGCAGCACA-CGG GTCG CCGCTGTGTAGCGCG TGTCGTGGAAACGGA TERM 1512 1368523 - 1368540 + g 75 -5.5 -4.56775 | CGCCCGCATTTGGCA CCGCC CGGCGCAT GGCGG TTTTTAAACCGGCCT istB 1369804 - 1369010 - | IS21 family transposase istA 1371311 - 1369794 - | IS21 family transposase Avi_1641 1373079 - 1371367 - | Subtilisin-like serine protease protein TERM 1513 1372464 - 1372495 + g 71 -10.8 -3.53012 | opp_overlap 1372444 1372463 1372464 1372490 CTGCACCGCGATAAC GGCTGAGGAGCTCG CCGC CGAACTCATCGGCC TTTCGGGCGACACGA Avi_1642 1374018 - 1373092 - | AAA-family ATPase Avi_1644 1375255 - 1374593 - | transcriptional regulator TERM 1514 1374993 - 1375008 + g 72 -6 -4.31293 | GTCTTCGCTTGCGCC CGCACG AAGT CGAGCG TTTCTTCGTCTGTCA Avi_1645 1375343 - 1376326 + | transcriptional regulator AraC family TERM 1515 1376640 - 1376657 + F 79 -4.9 -4.89562 | overlap 1376617 TGATTGAGACAGGCT TAATTCG CCCT CGAATTG TTTTGTTGATTTTCG vgrG 1376696 - 1379098 + | vgrG protein TERM 1516 1379804 - 1379794 - g 87 -6.8 -4.90455 | overlap 1379800 AGAGATCGAGAAAAA CGAG AAT CTCG CTCTAGGCGAAAAAT Avi_1647 1379102 - 1379833 + | hypothetical protein Avi_1649 1380667 - 1381299 + | hypothetical protein Avi_1650 1381581 - 1381865 + | hypothetical protein attM 1382860 - 1382144 - | Zn-dependent hydrolase Avi_1655 1383757 - 1382942 - | hypothetical protein Avi_1658 1384843 - 1385871 + | hypothetical protein TERM 1517 1385951 - 1385908 - T 100 -31.4 -4.08144 | opp_overlap 1385918 CGCATGAATTATAAA GCCTTACAGAGCTGTGCGTT TTAA AACGCACAGCTCTGTAAGGC AAACGCGCGGGCTGG TERM 1518 1385918 - 1385941 + T 95 -15.4 -2.87132 | opp_overlap 1385908 ATAAAGCCTTACAGA GCTGTGCGTT TTAA AACGCACAGC TCTGTAAGGCAAACG TERM 1519 1385982 - 1385996 + T 85 -11.4 -3.58343 | AGATTATTTCTGTTC GACGGC GAC GCCGTC TTTGCCAATGCTGAG Avi_1659 1386119 - 1385970 - | hypothetical protein Avi_1661 1387490 - 1386231 - | glycosyl transferase Avi_1662 1388748 - 1387522 - | hypothetical protein TERM 1520 1388112 - 1388100 - G 70 -4.7 -4.49756 | CGCTAAACAGGAAAA GCGCC CAG GCCGC CCGTGAAAACGACAG Avi_1663 1390295 - 1388745 - | polysaccharide biosynthesis glycosyltransferase TERM 1521 1390034 - 1389995 - G 76 -3.4 -4.98436 | gap 1, overlap 1389998 1390008 TGAACAGGATAAAAA CCACCGCACCAAGGGCGCC AAA GGCACCAATG-TGCAGGAG AGTGTCAATCGGTCC Avi_1664 1391532 - 1390396 - | glycosyl transferase gumB 1392101 - 1391532 - | polysaccharide export protein TERM 1522 1392503 - 1392491 - g 71 -6.9 -4.12188 | TTACGATGCGGAAAA CGCCA AAT CGGCG GCCTCGGAACCGGTG exoP 1392279 - 1394522 + | exopolysaccharide polymerization/transport protein Avi_1667 1395788 - 1394574 - | hypothetical protein Avi_1668 1396116 - 1395868 - | hypothetical protein TERM 1523 1397104 - 1397151 + G 76 -13.3 -2.85297 | gap 1, opp_overlap 1397098, overlap 1397101 1397098 TCTATCACATGGTCT CGTCGCTGCGGGCCGCACCGGG AACGA CCCA-TGCGCGCCGCAGCGTCG TGCTGTTTGCCATCG TERM 1524 1397271 - 1397288 + G 71 -10.5 -3.55714 | CTGCTCGGCTTTACG GTCGCGC ATCT GCGCGGC TTCTATGGTGCCTAT cox15 1396233 - 1397327 + | cytochrome oxidase assembly factor Avi_1671 1398134 - 1397307 - | hypothetical protein strB 1399063 - 1398197 - | streptomycin resistance protein TERM 1525 1399057 - 1399018 - G 72 -9.2 -3.63627 | opp_overlap 1399018 GCCTGATATGCGAAA GCCCCCATGTCTCCATCA GAGA TGGAGGAAAGACGGGGGC TTTCAAAAGGTTGTT argC 1400012 - 1399080 - | N-acetyl-gamma-glutamyl-phosphate reductase speB 1401035 - 1400082 - | agmatinase Avi_1676 1401939 - 1401094 - | hypothetical protein TERM 1526 1401159 - 1401193 + g 74 -7.7 -4.1899 | overlap 1401139 CGCGGGCGATGATGC GCTGCCGTGCGAGCC TTTCC GGGTCGCGCACCAGC TTTTCCGTGACATCG Avi_1678 1402903 - 1402058 - | hypothetical protein Avi_1679 1403337 - 1402975 - | hypothetical protein TERM 1527 1403423 - 1403406 - R 100 -10.5 -5.67063 | opp_overlap 1403406 TCGATCATAAAAAAA GCGGAGC CGAA GCCCCGC TTTTCCAATGTAAAA TERM 1528 1403406 - 1403423 + r 78 -8.3 -4.16943 | opp_overlap 1403406 TCGATCATAAAAAAA GCGGAGC CGAA GCCCCGC TTTTCCAATGTAAAA rpsI 1403920 - 1403453 - | 30S ribosomal protein S9 rplM 1404387 - 1403923 - | 50S ribosomal protein L13 TERM 1529 1404504 - 1404480 - H 80 -5.5 -4.89852 | opp_overlap 1404496, overlap 1404483 TCACACGCACAAAAA GAATGCGGTCC ATA GGGCCGCAAGC TGCCGGCTTTATAGT TERM 1530 1404501 - 1404483 - g 88 -10.2 -4.5448 | opp_overlap 1404496, overlap 1404480 CACGCACAAAAAGAA TGCGGTCC ATA GGGCCGCA AGCTGCCGGCTTTAT Avi_1683 1404482 - 1404712 + | hypothetical protein TERM 1531 1405490 - 1405502 + F 88 -2 -5.50723 | TCTTCAGGGTAGCTT TTCA TGCTT TGAA TTTTTGTTTTGCTGC TERM 1532 1405599 - 1405586 - f 72 -8.1 -3.86015 | GATTGTCTGGAGAAA CGGCT GTCA AGCCG GGAAGGATAAGCCAT TERM 1533 1405980 - 1405970 - g 71 -8.2 -4.07885 | opp_overlap 1405947 GACGCGGCGGCAAAA GCCG AGG CGGC AGGCATCGCTGTCGT Avi_1684 1405613 - 1406077 + | hypothetical protein TERM 1534 1406091 - 1406126 + T 75 -11.9 -3.04799 | opp_overlap 1406094 1406100, overlap 1406100 GATACCAAGCTGCAC CAACGATAATCGCGC TGCCTT GCGCGATTATCGCCG TCTTGCGGGCTTATC TERM 1535 1406123 - 1406094 - T 100 -16.6 -3.16921 | opp_overlap 1406091 1406100, overlap 1406100 ACCAAGCTGCACCAA CGATAATCGCGC TGCCTT GCGCGATTATCG CCGTCTTGCGGGCTT Avi_1686 1406527 - 1406159 - | hypothetical protein TERM 1536 1406537 - 1406524 - G 79 -5.3 -4.72986 | TATCTCCATCAAAAA GCATT TGCC AATGC CTATAGCATGTCGCG TERM 1537 1406537 - 1406582 + H 100 -17.1 -5.46706 | opp_overlap 1406546 AAGCATTTGCCAATG CCTATAGCATGTCGCGTGATT CCGG ATTCACCCGACATGTTATAGG TTTTTGTTTTCGCAT TERM 1538 1406922 - 1406938 + G 72 -5.1 -4.68424 | opp_overlap 1406922, overlap 1406925 GCAGGCGGGAAAGGA CATTCTG AGG CAGACTG TTTTTGCGTCGCTTG Avi_1687 1406746 - 1407198 + | hypothetical protein TERM 1539 1408334 - 1408364 + G 88 -11.1 -4.19238 | gap 1, opp_overlap 1408324 1408336 AACCATGCGCTGCAA CAGCGCTACGCGCC GAGA GGCGC-TGGCGCCG TTTTCACCTTCGGGC Avi_1690 1407338 - 1408621 + | O-acetylhomoserine sulfhydrylase Avi_1691 1409817 - 1408687 - | hypothetical protein Avi_1693 1410204 - 1410548 + | hypothetical protein Avi_1694 1411804 - 1410560 - | cytochrome P450 hydroxylase TERM 1540 1411747 - 1411734 - G 78 -3.7 -5.02074 | overlap 1411735 GGAGCTTCGAAAAAA CCGGG ATGA CCCGT GTCGAGACTGACCGA Avi_1695 1413111 - 1411849 - | GGDEF family protein clpP 1413481 - 1414113 + | ATP-dependent Clp protease proteolytic subunit ClpP clpX 1414402 - 1415679 + | ATP-dependent Clp protease ATP-binding subunit TERM 1541 1415682 - 1415661 - f 72 -4.3 -4.71426 | overlap 1415662 TCGCCAGGAAGAAAA GGCCAACGC TTCG GCGTGAACC TCCGCAATCTCTGAA TERM 1542 1415701 - 1415731 + F 91 -11.1 -4.16842 | opp_overlap 1415700 GCAATCTCTGAACAG CTTTGAAGCCCGC CGCGT GCGGGCTTCGGCG TTTCTTCGGGGTGGG TERM 1543 1415963 - 1416013 + F 76 -3.6 -4.95167 | overlap 1415997 GGAATGCCTGGCGTG CGCATCAGGGTAGGGCGGCTTCGG TCG CCGTGGTCGGGCAGCGCCGGTGCG TTTTGTTGTTGCTTG TERM 1544 1417121 - 1417106 - g 72 -4.7 -4.62069 | overlap 1417120 TGCGGAGCTGAAAAA GCTCA AGCATA TGAGC CCGATGTCGGCGGAA TERM 1545 1417243 - 1417231 - g 90 -7.7 -5.00884 | opp_overlap 1417231 ACGCGGCTGAAAAAA TCCTC GAC GAGGA TCATTTCGGTCTCGA TERM 1546 1418320 - 1418337 + G 72 -9.9 -3.68351 | overlap 1418313 1418323 CGTCGGCTGGCGTGG CAATGGC AACC GCCATTG TTTCGATCATGACGG TERM 1547 1418507 - 1418492 - g 79 -6.8 -4.63932 | overlap 1418501 GATCCCGGAAGAAAA CGCCAA GGAT CTGGCG GATATTCCAGACAAT lon 1416084 - 1418687 + | ATP-dependent protease La TERM 1548 1418735 - 1418754 + F 100 -15 -5.24129 | opp_overlap 1418735 GGAAAACTTCGAAAA GGCTGGCC TTCG GGCCAGCC TTTTTTGTGCAAACA TERM 1549 1418754 - 1418735 - f 100 -15 -4.19276 | opp_overlap 1418735 GGAAAACTTCGAAAA GGCTGGCC TTCG GGCCAGCC TTTTTTGTGCAAACA hupA 1419015 - 1419290 + | HU-like DNA-binding protein alpha subunit TERM 1550 1419320 - 1419351 + F 100 -13.8 -3.90048 | opp_overlap 1419312 1419327, overlap 1419327 AACATACCAGTTCTA CCGAAAACCCGGCT CTCA AGCCGGGTTTTTTG TCTTTTTGCAGGAAG TERM 1551 1419327 - 1419344 + F 100 -12.7 -5.69068 | opp_overlap 1419327, overlap 1419320 CAGTTCTACCGAAAA CCCGGCT CTCA AGCCGGG TTTTTTGTCTTTTTG TERM 1552 1419344 - 1419327 - f 95 -12.7 -4.18494 | opp_overlap 1419320 1419327 CAGTTCTACCGAAAA CCCGGCT CTCA AGCCGGG TTTTTTGTCTTTTTG TERM 1553 1419461 - 1419439 - f 75 -5.5 -4.67608 | gap 1 GAGTTCAATACAAAA TGGCTGC-CG CAAA CGAGCTGCCA ATGGTCCATCAGAGA TERM 1554 1419525 - 1419539 + F 85 -11.4 -3.60627 | GACCAAGCTCTGCGT GGCCTG TCA CAGGCC TTTCGCGTGGCGTAA TERM 1555 1420384 - 1420394 + G 70 -2.4 -4.80736 | TGGCCAATGCCATCC CCGC TTC GCTG TTTCTTTATTTCGTC Avi_1702 1419666 - 1421003 + | Na+/melibiose symporter and related transporter protein Avi_1703 1421522 - 1421004 - | transcriptional regulator MarR family fadD 1421742 - 1423340 + | long-chain-fatty-acid-CoA-ligase TERM 1556 1423380 - 1423370 - g 73 -3.2 -4.84761 | overlap 1423371 ACAGTTGCAGAAAAA TCCG ACG CAGA CACCGTGTTGGTCGA fadB 1423352 - 1424185 + | enoyl-CoA hydratase TERM 1557 1424221 - 1424244 + T 100 -11.7 -5.40474 | opp_overlap 1424221 TTCATAGGAATGAAA GACCCGCGG AATCAC CTGCGGGTC TTTTTTTGCCGAGCT TERM 1558 1424244 - 1424221 - T 81 -10.3 -3.98282 | gap 1, opp_overlap 1424221 TTCATAGGAATGAAA GACCCGC-GG AATCA CCTGCGGGTC TTTTTTTGCCGAGCT Avi_1707 1425574 - 1424777 - | hypothetical protein Avi_1708 1426308 - 1425616 - | hypothetical protein TERM 1559 1426387 - 1426370 - H 100 -4 -5.62045 | overlap 1426371 1426372 ATAGACAAGAAAAAA CCCGCC GAGAGT GTCGGG GCCGCGCCTAGAGCG TERM 1560 1427044 - 1427060 + H 100 -3.7 -6.47325 | GTCGCTGAAAAAACC GCAAGAG GGT TTTTTGC TTTTTTTTGTTTTTT TERM 1561 1427595 - 1427576 - H 72 -5 -4.72272 | overlap 1427577 TCCTGGTACTAAAAA GTGAATGG CTTT CCATTCAG ATGCCCTTGACACGG nuoA 1427916 - 1428290 + | NADH ubiquinone oxidoreductase chain A TERM 1562 1428857 - 1428840 - g 75 -4.1 -4.77165 | gap 1, overlap 1428842 TGCTTCAGAAGAAAA TC-CGCCG CAC CGGCACGA TCGAGCGCTAAGGCG nuoB 1428281 - 1428868 + | NADH ubiqionone oxidoreductase chain B nuoC 1428886 - 1429488 + | NADH ubiquinone oxidoreductase chain C nouD 1429508 - 1430698 + | NADH ubiquinone oxidoreductase chain D nuoE 1430956 - 1431756 + | NADH dehydrogenase I chain E nuoF 1431760 - 1433064 + | NADH dehydrogenase I chain F TERM 1563 1433580 - 1433556 - g 78 -4.2 -5.00616 | gap 1 CGTTCGGCCAAAAAA CCGACAGTCGC GCCT GTGAC-GCCGG TAGAGGAGCCCGAAG Avi_1719 1433109 - 1433840 + | hypothetical protein Avi_1720 1434123 - 1436204 + | NADH-quinone oxidoreductase chain G nuoH 1436217 - 1437260 + | NADH ubiquinone oxidoreductase I chain H nuoI 1437301 - 1437792 + | NADH ubiquinone oxidoreductase chain I TERM 1564 1438029 - 1438041 + G 70 -2.6 -4.73613 | ATTTCGTCACGCAAT CCGG TTCAT TCGG TTTTGTTCCTCATCC nuoJ 1437948 - 1438562 + | NADH ubiquinone oxidoreductase chain J TERM 1565 1438798 - 1438829 + G 75 -12.3 -3.31157 | gap 1 CGCGCTGTTTATCCT GACCG-TCGCGGCT GCGGA AGCCGCGATCGGCC TTGCTATCCTCGTTG nuoK 1438595 - 1438903 + | NADH ubiquinone oxidoreductase chain K TERM 1566 1439936 - 1439958 + GF 71 -6.8 -4.14472 | overlap 1439937 GTTCGTGGCGCTCGG CGTCGGCGCC TAT GGCGCTGCCA TTTTCCACCTGTTCA TERM 1567 1440623 - 1440609 - gf 72 -7.1 -4.19371 | opp_overlap 1440609 1440605 1440610 GAAACGCCGAAGAAA CTGGC ACAAA GCCAG TGGCTTCTCTACCAA nuoL 1438911 - 1440902 + | NADH ubiquinone oxidoreductase chain L TERM 1568 1441493 - 1441465 - gf 72 -11.7 -2.54193 | opp_overlap 1441462 GATTATGGCAATGTA CTGGGATGCCGGC ACG ACCGACATCGCAG CGCTTCTGGCTCATA nuoM 1440875 - 1442413 + | NADH dehydrogenase I chain M nuoN 1442431 - 1443870 + | NADH ubiquinone oxidoreductase chain N TERM 1569 1443888 - 1443916 + G 83 -14.6 -3.05844 | GACTATTCCACCCAT CGTCGGAAGGCG CTCGA CGCCTTCCGACA TATTGCGCTGGACGA birA 1443867 - 1444655 + | birA bifunctional protein TERM 1570 1445335 - 1445350 + G 72 -6.1 -4.27617 | AACAGCAGAGGGGCG CGTGG CGATCA CCACG TTTTCCTCCAATGTC TERM 1571 1445629 - 1445639 + G 81 -3.2 -5.21709 | overlap 1445612 GGCGCTGACCAAAGG CGAC ACA GTTG TTTTTTCGTCTCGCG Avi_1731 1444652 - 1446319 + | metal dependent hydrolase TERM 1572 1446420 - 1446378 - f 72 -8.5 -3.73647 | gap 1, opp_overlap 1446386, overlap 1446379 1446382 CTCAGCTATCAACAA GGCATAGAGCGCCAGTCATC TTGT GATGG-TGGCGCTCTATGGG CGCAGATATGGGAGA TERM 1573 1446419 - 1446379 - f 75 -12 -2.83867 | gap 1, opp_overlap 1446386, overlap 1446378 1446382 TCAGCTATCAACAAG GCATAGAGCGCCAGTCATC TTGT GATGG-TGGCGCTCTATGG GCGCAGATATGGGAG TERM 1574 1446416 - 1446382 - f 76 -12.3 -2.67428 | gap 1, opp_overlap 1446386, overlap 1446379 1446378 GCTATCAACAAGGCA TAGAGCGCCAGTCATC TTGT GATGG-TGGCGCTCTA TGGGCGCAGATATGG gloA 1446441 - 1446845 + | lactoylglutathione lyase Avi_1735 1447274 - 1446876 - | hypothetical protein TERM 1575 1447486 - 1447467 - g 74 -7.2 -4.29396 | gap 1, overlap 1447481 AACCATGGAGGAAAA CCGCA-TCA AAT TGATTGCGG CAGGCCGAAAAGCCT TERM 1576 1447563 - 1447573 + G 71 -8.2 -4.00476 | overlap 1447562 TGCTGCGGGGCTGAC GCGC GGT GCGC TTTATCATAACTTTG Avi_1736 1447432 - 1448025 + | transcriptional regulator TetR family Avi_1737 1448181 - 1448450 + | hypothetical protein TERM 1577 1448536 - 1448519 - f 100 -7.7 -6.07627 | opp_overlap 1448519 ATGGGCAAAAAAAAA CAAGGCC CGAA GACCTTG TTATTGAAATGTCGC TERM 1578 1449501 - 1449530 + G 75 -4.1 -4.72272 | gap 1, opp_overlap 1449496, overlap 1449501 1449502 CGTGATGAGATCAGG C-CGCGCTTCGGCA CGA TGCGGTCGCGCGAG TTTTTGATGAAAGAC TERM 1579 1450226 - 1450255 + G 72 -9.3 -3.74747 | gap 1, opp_overlap 1450219, overlap 1450229 1450250 CGACGATACCGATGA TCGCGCCGGTGCGA AAT TCGCACTCGC-CGA TTTGATCGGCGTTCC TERM 1580 1450250 - 1450266 + G 73 -12.3 -3.12999 | opp_overlap 1450219, overlap 1450229 1450226 TGCGAAATTCGCACT CGCCGAT TTG ATCGGCG TTCCCTATCAGGTGA proS 1448895 - 1450391 + | prolyl-tRNA synthetase Avi_1740 1450411 - 1451718 + | ABC transporter membrane spanning protein TERM 1581 1452181 - 1452234 + G 71 -11.8 -3.01712 | opp_overlap 1452188 1452191, overlap 1452186 CCGAACTTTCTGGCG GCGAACAGCAGCGCG-TGGCCATTGC CCGT GCGGTTGCCAATGCGCCGCTGTT-GC TGTTGGCGGACGAGC TERM 1582 1452186 - 1452230 + G 73 -11.4 -3.36273 | gap 1, opp_overlap 1452188 1452191, overlap 1452181 CTTTCTGGCGGCGAA CAGCAGCGCG-TGGCCATTGC CCGT GCGGTTGCCAATGCGCCGCTG TTGCTGTTGGCGGAC lolD 1451733 - 1452422 + | ABC transporter nucleotide binding/ATPase protein (lipoprotein) TERM 1583 1452468 - 1452491 + F 100 -14.6 -4.8048 | opp_overlap 1452468 TCAGCGATATCAAAA CCCGTCGATC ATCT GATCGGCGGG TTTTTCGTATGGCGC TERM 1584 1452491 - 1452468 - f 100 -12.4 -4.3586 | opp_overlap 1452468 TCAGCGATATCAAAA CCCGTCGATC ATCT GATCGGCGGG TTTTTCGTATGGCGC TERM 1585 1452584 - 1452565 - f 71 -2.2 -5.01732 | overlap 1452567 AACTCCGGGAAAAAA TATCTGTT GACG AACAAACA AAAGGAGAACAAAAT TERM 1586 1453329 - 1453343 + G 71 -12.8 -2.57564 | overlap 1453328 CCATTGTGCTTCTCG CCGCCG ATC CGGCGG GTTATGAGCGGCTGG TERM 1587 1455451 - 1455434 - g 84 -6.9 -4.74706 | GCCAATACCGAAAAA CTGGTGG ATTT CCGCCAG GATGCCGGGCGTCTC dnaE 1452953 - 1456492 + | DNA polymerase III alpha chain Avi_1744 1457801 - 1456566 - | hypothetical protein TERM 1588 1457954 - 1457928 - R 74 -8 -4.07786 | overlap 1457920 TATAAAATGCACAAA GGATGCAGCC GCGTGCA GGCTGAATCC TAAAATAAACGTCGA dinP 1459336 - 1458050 - | DNA-damage inducible protein TERM 1589 1458509 - 1458535 + g 72 -9.4 -3.65351 | overlap 1458499 TTTGGCCGGGTCATT GGTATGGACGTC CCG GTCGTCTATGCC TTTCGATAGCCGTGC TERM 1590 1459120 - 1459088 - G 83 -14.1 -3.08679 | opp_overlap 1459118 GCGGGCCACGTAACA GGCGGTGGAAACCAC ACC GCGCTTACCACCGCC AATGATCAATGGCTT TERM 1591 1459389 - 1459405 + r 76 -12.3 -2.64735 | overlap 1459374 GGGTTTTCAGTGCCT GCAAGGG GAA CCCTTGC TAATCTCCATGGCCT Avi_1747 1460092 - 1459445 - | hypothetical protein Avi_1748 1460400 - 1460092 - | hypothetical protein TERM 1592 1460337 - 1460348 + g 71 -7.2 -4.1711 | overlap 1460344 CTAGCCAACCCAGTA CGGC AATC GCCG TTTGTTCGGCGTGCT divK 1460643 - 1461014 + | two component response regulator TERM 1593 1461855 - 1461882 + G 73 -11.2 -3.40141 | GCTGCGCCTGTGTTC GCAGCTGCGGTC GCTG GACCGCACCCGC TTCATTCCGATTTTG pleD 1461199 - 1462572 + | two component response regulator TERM 1594 1462891 - 1462926 + T 83 -6.2 -5.00884 | opp_overlap 1462901, overlap 1462892 GTTATGTTTTTCGAA TTGTTGATAACGACGA TTTT TCGTCGATATCGAGAG TTTTTTAGAGAAAAT TERM 1595 1463356 - 1463381 + T 100 -14 -4.35524 | AACGCCGCTTCCCAA CGCCGCTTCC TTGTCC GGAGGCGGCG TTTTGCGTTTCGCGG TERM 1596 1463583 - 1463564 - T 100 -8.5 -5.63504 | opp_overlap 1463563 1463564 AACGGCATAAAAAAA GCGCGCC GGATGG AGCGCGC CTTTCAATCTTCTTA TERM 1597 1463606 - 1463625 + T 74 -8.6 -3.91911 | opp_overlap 1463606 TCTTCTTACGAAGAA CCAGGATC ACTT GATCTTGG TTTCCTTAAACTCGA rpmG 1463779 - 1463612 - | 50S ribosomal protein L33 TERM 1598 1463836 - 1463810 - R 72 -6.5 -4.3587 | gap 1, overlap 1463804 CATGAATAACACAAA GCCGTGACGACC TTCA GGGC-CCACGGC AAATCTGGGCGGAAA Avi_1753 1465057 - 1463873 - | MFS permease TERM 1599 1464164 - 1464134 - G 75 -11.9 -3.29144 | GCAGCCGCCCCAGAA TAGCAGGATGACG GCCAT CGCCATCCAGCTA TGGGAGATCAGCGGC TERM 1600 1464534 - 1464499 - G 79 -12.6 -3.23853 | overlap 1464497 TGCGGGCAACGAAGA TCGGCACCGCTGCCAT GAGG ATGGCAACCGCACCGA TGGCAAAGGGCAATA TERM 1601 1464591 - 1464575 - G 81 -8.7 -4.3208 | GCCGACAATCGAAAA CAGCAAG GGG CCTGCTG CAAAACCGACCGATA TERM 1602 1465118 - 1465078 - R 71 -3.2 -4.77165 | gap 1, overlap 1465079 1465080 1465087 GTCCTTAGAAGAAAA TGCACGCAATGCGCGGTGA AGGA TAACAGCGCAAGGCGT-CA TGCCAGGGCAACAAA Avi_1754 1465766 - 1465311 - | hypothetical protein rnr 1468291 - 1465913 - | ribonuclease R TERM 1603 1465999 - 1466010 + g 79 -5.8 -4.72029 | opp_overlap 1465999, overlap 1466007 TGTGGAAGGAACGGA TGCC GGTC GGCA TTTTCTTGCCTTCGC TERM 1604 1467495 - 1467511 + g 74 -2.2 -4.91109 | CCATGGGCATGGATG GCGATC ATCGA GATGGC TTTTTCTGATGCCAC TERM 1605 1467734 - 1467724 - G 74 -8.2 -4.13014 | opp_overlap 1467724, overlap 1467725 GGTAGACGCCCAAAA GCGC GCC GCGC CGCTTGTCGATCACT topA 1471002 - 1468288 - | DNA topoisomerase I TERM 1606 1469524 - 1469557 + g 70 -2.4 -4.72986 | gap 2 CAGCGTTGCGGCATA GGTGG-AGGGC-CGGC CAAT GCCAAGCTCTTCCATC TTTTTGATCAGGGTC TERM 1607 1470436 - 1470457 + g 74 -8.1 -4.11216 | gap 1, overlap 1470430 GTTCCAGTATTCTTC CGAGA-CGAA TCG TTCGATCTCG TTTTCCCGGTCGCAA TERM 1608 1471474 - 1471452 - R 70 -6.3 -4.2354 | overlap 1471449 CAAACGCCAAAAGAA CGCTTTGAA AATCG TTCAAGGCG CTGATGAGCGAAGTC dprA 1472646 - 1471495 - | DNA protecting protein DprA TERM 1609 1471791 - 1471810 + g 72 -5 -4.58395 | gap 1 GAATATCCCGGGCCT CGGTGGTGA TCG TCGC-ACCG TTTTTCAACAGTCCA Avi_1760 1473282 - 1472653 - | hypothetical protein TERM 1610 1473357 - 1473315 - R 72 -4.8 -4.68124 | gap 3, opp_overlap 1473349, overlap 1473317 TCAAGACAGAGAAAA CACCGGACG-GCC--CGCCAC ATAG GTGGCGACAGCGCGGCCGGAG AAGCGGGCGTCTTCA pyrC 1474592 - 1473300 - | dihydroorotase pyrB 1475545 - 1474589 - | aspartate carbamoyl transferase TERM 1611 1475404 - 1475448 + g 72 -5.1 -4.62872 | gap 2, overlap 1475407 1475441 AAAGGTTGATCTGGG TCAGACCGCGCAGGGTGGAGG TCTTT TTTTCACGCTG-GCGG-CTGA TTTTTACCGCTTCGT TERM 1612 1475407 - 1475426 + g 85 -2.8 -5.42259 | gap 1, overlap 1475404 GGTTGATCTGGGTCA GACCGCGCA GGG TG-GAGGTC TTTTTTTCACGCTGG acd 1475853 - 1477496 + | acyl-CoA dehydrogenase Avi_1764 1477557 - 1477985 + | Histone acetyltransferase protein TERM 1613 1478154 - 1478166 + F 83 -5.5 -5.15117 | overlap 1478163 ATATGTGGCACTGGG CGTCA TGA TGGCG TTTTTTGCCGTTTTG Avi_1767 1478316 - 1478636 + | hypothetical protein Avi_1768 1479067 - 1478591 - | holliday junction resolvase protein TERM 1614 1479101 - 1479141 + H 95 -9.8 -4.66318 | gap 1, opp_overlap 1479107, overlap 1479102 GAATAGTGTGTTCAT G-CCAAACTGTGTGGATAC GGGG GTATCCTCGCCGTTTGGTC TTTTCTTGCGCTGCT TERM 1615 1479102 - 1479139 + H 100 -13.5 -3.94438 | opp_overlap 1479107, overlap 1479101 AATAGTGTGTTCATG CCAAACTGTGTGGATAC GGGG GTATCCTCGCCGTTTGG TCTTTTCTTGCGCTG Avi_1769 1479212 - 1479916 + | metal dependent hydrolase gatC 1480080 - 1480367 + | glutamyl-tRNA-Gln-amidotransferase chain C TERM 1616 1480903 - 1480949 + G 71 -10 -3.54424 | gap 1, overlap 1480937 TGAGGAAAAGCTGGT GCCGGGCGGCT-CATCCGGCG GTTCGG CGGCGGCTGTGGCTGCACGGC TTTGCGCGGGTGCCA gatA 1480439 - 1481920 + | glutamyl-tRNA amidotransferase subunit A Avi_1774 1481925 - 1482404 + | acetyltransferase TERM 1617 1482857 - 1482871 + G 84 -2.7 -5.40072 | overlap 1482864 AACCCATGCCCGCAA CCGTC AGGCC GTCGG TTTTTTTGAACACCA Avi_1775 1482501 - 1483019 + | acetyltransferase Avi_1776 1484474 - 1483032 - | hypothetical protein TERM 1618 1483194 - 1483176 - G 71 -12.4 -2.87132 | overlap 1483178 GGCTCCGGTCACATA CAGCACGG TTT CCGTGCCG AGCGCCGAGGTCAGC Avi_1777 1484813 - 1484490 - | Lipid A biosynthesis protein Avi_1778 1485573 - 1484806 - | dolichol-phosphate mannosyltransferase TERM 1619 1485758 - 1485772 + H 95 -11.4 -4.30719 | AATGCTGCTTCGTCT TGCGCG TTC CGCGCA TTTGTTCTAACCGGG gatB 1485920 - 1487422 + | glutamyl-tRNA amidotransferase subunit B Avi_1782 1487429 - 1487947 + | acetyltransferase Avi_1783 1487987 - 1488448 + | acetyltransferase Avi_1784 1488549 - 1488947 + | hypothetical protein TERM 1620 1488962 - 1488990 + F 70 -10.4 -3.15366 | gap 1 ACAGAGATTTTGTGA GCGCATGACG-GT GTTA ACGCGTTATGCGC TCTTCCGGTTTTGGC TERM 1621 1489029 - 1489050 + F 71 -3 -4.86385 | overlap 1489031 TCCGGTACATGGGTT TGTCAGCG TTTTCC TGCTGATA TTTGTTTTTGCGCAT Avi_1785 1489079 - 1489594 + | hypothetical protein aat 1490263 - 1489625 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 1622 1489993 - 1490020 + g 75 -9.8 -3.85698 | gap 1 GGTTGATCCAGGTGC TGGGCCG-GTCCG GTG CGGGCTCGGCGCA TTTGTCCAGAACCGC accC 1491625 - 1490273 - | acetyl-CoA carboxylase biotin carboxylase TERM 1623 1491378 - 1491402 + g 77 -13.5 -2.90496 | overlap 1491375 GAGAGGAAGCCGTAG CCGGGATGGAC GGC GTCCGCCCCGG TGATTTCGCAGGCGG accB 1492118 - 1491630 - | acetyl-CoA carboxylase biotin carboxyl carrier protein aroQ 1492581 - 1492144 - | 3-dehydroquinate dehydratase Avi_1790 1493531 - 1492707 - | outer membrane protein aspB 1493776 - 1494933 + | aspartate transaminase Avi_1793 1495057 - 1495629 + | hypothetical protein TERM 1624 1495676 - 1495711 + T 100 -18.4 -2.60496 | opp_overlap 1495663 1495677 1495683, overlap 1495683 AACGCTTACCATTAA ACGAAAACGGCCACGC TGGA GCGTGGCCGTTTTTGA ATGTTTAAGACGCAA TERM 1625 1495710 - 1495677 - T 100 -19.7 -3.78953 | opp_overlap 1495676 1495683, overlap 1495663 1495683 ACGCTTACCATTAAA CGAAAACGGCCACGC TGGA GCGTGGCCGTTTTTG AATGTTTAAGACGCA TERM 1626 1495704 - 1495683 - T 100 -17.3 -4.59376 | opp_overlap 1495676 1495683, overlap 1495677 ACCATTAAACGAAAA CGGCCACGC TGGA GCGTGGCCG TTTTTGAATGTTTAA TERM 1627 1495683 - 1495704 + T 100 -17.3 -4.77986 | opp_overlap 1495683 1495677, overlap 1495676 ACCATTAAACGAAAA CGGCCACGC TGGA GCGTGGCCG TTTTTGAATGTTTAA rne 1498841 - 1495734 - | ribonuclease E amiA 1499498 - 1500802 + | N-acetylmuramoyl-L-alanine amidase TERM 1628 1503558 - 1503578 + G 91 -12.5 -4.07687 | opp_overlap 1503551 GTCAACCAGGCCGTT CAGTCCGGG ACG CCCGGCCTG TTTTAACAGAACGAT mrcA 1501128 - 1503584 + | penicillin-binding protein 1a TERM 1629 1503602 - 1503639 + F 83 -12.1 -3.28712 | gap 1, opp_overlap 1503597 1503598 GAACGATCAAGCTTG TCGCC-ATGCCCCGGA CTTTACT TCCGGGGCATCGGCAA TTATGGACCGGGCAC TERM 1630 1503746 - 1503723 - f 72 -8.2 -3.72695 | gap 1, opp_overlap 1503737 1503738, overlap 1503727 1503738 ATGTCGTCGACGAAA TCAAGCAGGCC ATA AGCCTGC-TGA GGAGGCATCTTTGAC TERM 1631 1503743 - 1503727 - f 77 -10.1 -3.56704 | opp_overlap 1503737 1503738, overlap 1503723 1503738 CGTCGACGAAATCAA GCAGGCC ATA AGCCTGC TGAGGAGGCATCTTT prfB 1503783 - 1504817 + | peptide chain release factor 2 TERM 1632 1504876 - 1504899 + F 100 -11 -5.74122 | opp_overlap 1504876 GCAGTGAAATGCAAA CCGTCTGAGC TTCT GTTCAGGCGG TTTTTTTGTATAATG Avi_1801 1504948 - 1505847 + | orotidine 5-phosphate decarboxylase protein Avi_1802 1506399 - 1505854 - | hypothetical protein Avi_1804 1507143 - 1506442 - | hypothetical protein Avi_1808 1507746 - 1507597 - | hypothetical protein Avi_1810 1509282 - 1508401 - | tRNA/rRNA metyltransferase TERM 1633 1509144 - 1509162 + g 75 -5.2 -4.66833 | overlap 1509131 GTGGCGGTGTCCAAT CGGCGT TGGACTT GCGCCG TTTTTGCGGTTGCGG TERM 1634 1511029 - 1511002 - g 78 -6.2 -4.67982 | gap 1, overlap 1510997 CGCCATGGAAGAAAA GCTGCGCTTCGCG ATC CGCGAAG-GTGGC CGTACCGTCGGCGCC tuf 1509896 - 1511071 + | translation elongation factor Tu TERM 1635 1511121 - 1511102 - f 100 -15 -3.30701 | opp_overlap 1511102, overlap 1511097 GGGGATGAAATGGAA CCCCGCTG GCAA CAGCGGGG TTTTTGCGTTTAGGA TERM 1636 1511102 - 1511121 + F 100 -15 -4.81249 | opp_overlap 1511102 1511097 GGGGATGAAATGGAA CCCCGCTG GCAA CAGCGGGG TTTTTGCGTTTAGGA TERM 1637 1511244 - 1511217 - f 77 -7 -4.49981 | opp_overlap 1511217, overlap 1511219 GAGACCATGAGAAAA TCTGCAAAACGG CAAG CCGTACTGCAAA TTCTTGGTGGCTAAT Avi_1814 1511339 - 1512028 + | hypothetical protein Avi_1815 1512154 - 1512888 + | CMP KDO transferase protein TERM 1638 1513231 - 1513201 - g 74 -6.8 -4.27316 | opp_overlap 1513203, overlap 1513203 CCTTTGAACCGAAAA TAGGTGTCGATACC TCT GTTATCGCCACCAA GAGCGGGCAGGTGGA TERM 1639 1513229 - 1513203 - g 72 -9.4 -3.7398 | opp_overlap 1513203, overlap 1513201 TTTGAACCGAAAATA GGTGTCGATACC TCT GTTATCGCCACC AAGAGCGGGCAGGTG Avi_1816 1513026 - 1513679 + | hypothetical protein secE 1514059 - 1514259 + | secretion protein Avi_1818 1514276 - 1514806 + | transcription antitermination protein TERM 1640 1514813 - 1514830 + F 88 -12.7 -3.60296 | AAGGTCTGATTGCTG CGGGAGG GTAA CCTCCCG TTTCGCGTGGGAGTG rplK 1514953 - 1515384 + | 50S Ribosomal Protein L11 rplA 1515387 - 1516082 + | 50S ribosomal protein L1 TERM 1641 1516088 - 1516104 + F 87 -13.7 -3.04322 | CACAGCTTAATTTTT CGGGGTG TTC CACCCCG TATTCAAGAATTCCC TERM 1642 1516109 - 1516145 + F 78 -8 -4.37658 | gap 1, opp_overlap 1516115, overlap 1516111 1516141 GTTCCACCCCGTATT CAAGA-ATTCCCGGTCC TTCG GGGCCGGGAATGTCCGG TTTTATAACCGGATT TERM 1643 1516138 - 1516115 - f 88 -12.4 -3.67597 | opp_overlap 1516111 1516109 CCCCGTATTCAAGAA TTCCCGGTCC TTCG GGGCCGGGAA TGTCCGGTTTTATAA TERM 1644 1516141 - 1516158 + F 79 -9.9 -3.83205 | opp_overlap 1516155, overlap 1516111 1516109 TCGGGGCCGGGAATG TCCGGTT TTAT AACCGGA TTTCCTGTCCGAGAT rplJ 1516426 - 1516944 + | 50S ribosomal Protein L10 TERM 1645 1516937 - 1516949 + F 81 -6.2 -4.75308 | opp_overlap 1516937, overlap 1516946 CCAAGAAGGACGAAG CCGC GTAAG GCGG TTTTTCGCTGTTCAT rplL 1517013 - 1517387 + | 50S ribosomal protein L7/L12 TERM 1646 1517398 - 1517433 + F 100 -21.2 -3.40403 | opp_overlap 1517389 AGTAATTCATACTTT CGGCTCCGGCGAGGGT GCAA ACTCTCTCCGGAGCCG TTCTCCTGACGGAAA TERM 1647 1517448 - 1517489 + F 89 -13.2 -3.29144 | opp_overlap 1517449 1517452 1517462, overlap 1517452 1517462 GTTCTCCTGACGGAA ATTATTACCCAAAAGCCG GTAAAA CGGCTTTTGGGTAATGGG TTCTCAAGAGGATGG TERM 1648 1517488 - 1517449 - f 88 -12.3 -3.64703 | opp_overlap 1517448 1517452 1517462, overlap 1517452 1517462 TTCTCCTGACGGAAA TTATTACCCAAAAGCCG GTAAAA CGGCTTTTGGGTAATGG GTTCTCAAGAGGATG TERM 1649 1517452 - 1517485 + F 100 -18.4 -2.59431 | opp_overlap 1517449 1517452 1517462, overlap 1517448 1517462 TCCTGACGGAAATTA TTACCCAAAAGCCG GTAAAA CGGCTTTTGGGTAA TGGGTTCTCAAGAGG TERM 1650 1517485 - 1517452 - f 100 -18.4 -2.94144 | opp_overlap 1517452 1517448 1517462, overlap 1517449 1517462 TCCTGACGGAAATTA TTACCCAAAAGCCG GTAAAA CGGCTTTTGGGTAA TGGGTTCTCAAGAGG TERM 1651 1517741 - 1517717 - g 75 -9.3 -3.90328 | CAGAAGTCGCAGAAA TGCCGAACCTC ATC GAGGTTCAGAA GGCATCCTACGATCA TERM 1652 1520053 - 1520004 - g 75 -10.5 -3.64487 | CGATATTCTGAACAA GGGCGATATCATCGCGGACGGTC CGTC GACCGACCTCGGCGACCTCGCGC TTGGCCGTAACGCGC rpoB 1517641 - 1521780 + | DNA-directed RNA polymerase beta subunit TERM 1653 1521819 - 1521856 + F 83 -9.9 -4.11484 | gap 1, opp_overlap 1521784 1521783 1521781, overlap 1521784 1521783 TTCGATGCGCGCGCC GTCCTC-CGCCAGTTG TAAACAT CAACCGGCGTGGGGAC TTTTGCCGCATTCAG rpoC 1521965 - 1526176 + | DNA-directed RNA polymerase beta subunit TERM 1654 1526195 - 1526232 + T 100 -14.9 -4.55023 | opp_overlap 1526202, overlap 1526197 1526202 GTGCAGCAATCGAAA TAAAAAAGCCGCCCGGA GCGA TCCGGGCGGCTTTTCCG TTTTATGATGTTGCC TERM 1655 1526197 - 1526230 + T 100 -19.7 -2.58651 | opp_overlap 1526202, overlap 1526195 1526202 GCAGCAATCGAAATA AAAAAGCCGCCCGGA GCGA TCCGGGCGGCTTTTC CGTTTTATGATGTTG TERM 1656 1526202 - 1526225 + T 100 -19.6 -4.4595 | opp_overlap 1526202, overlap 1526197 1526195 AATCGAAATAAAAAA GCCGCCCGGA GCGA TCCGGGCGGC TTTTCCGTTTTATGA TERM 1657 1526225 - 1526202 - T 100 -19.6 -5.67283 | opp_overlap 1526202 1526197 1526195 AATCGAAATAAAAAA GCCGCCCGGA GCGA TCCGGGCGGC TTTTCCGTTTTATGA Avi_1829 1526760 - 1526326 - | NTP pyrophosphohydrolase MutT family Avi_1830 1527064 - 1526771 - | hypothetical protein rpsL 1527507 - 1528115 + | 30S ribosomal protein S12 rpsG 1528198 - 1528668 + | 30S ribosomal protein S7 fusA 1528703 - 1530802 + | translation elongation factor G TERM 1658 1532007 - 1531980 - g 78 -6.2 -4.67982 | gap 1, overlap 1531975 CGCCATGGAAGAAAA GCTGCGCTTCGCG ATC CGCGAAG-GTGGC CGTACCGTCGGCGCC tuf 1530874 - 1532049 + | translation elongation factor Tu TERM 1659 1532070 - 1532096 + F 100 -15.2 -4.41616 | opp_overlap 1532073, overlap 1532073 CTTCATACAGACGAA TAAGCGCGGCAT TCA ATGCCGCGCTTC TTTATTTCCGGGAAT TERM 1660 1532093 - 1532073 - f 100 -16.9 -3.81089 | opp_overlap 1532073 1532070 CATACAGACGAATAA GCGCGGCAT TCA ATGCCGCGC TTCTTTATTTCCGGG TERM 1661 1532073 - 1532093 + F 100 -16.9 -4.32678 | opp_overlap 1532073, overlap 1532070 CATACAGACGAATAA GCGCGGCAT TCA ATGCCGCGC TTCTTTATTTCCGGG TERM 1662 1532184 - 1532158 - f 76 -9.4 -3.71848 | opp_overlap 1532162 CCCCGCCACGAACAA GGAAGAGCAGCG TAT CGCTCCTCTTTC CTCTGGCTCTGCTAA TERM 1663 1532162 - 1532180 + F 72 -8.8 -3.85539 | opp_overlap 1532158 GCCACGAACAAGGAA GAGCAGCG TAT CGCTCCTC TTTCCTCTGGCTCTG TERM 1664 1532252 - 1532279 + F 70 -4.1 -4.59773 | overlap 1532258 CCTGATGCAGTAAGG TGACATGGACG TCGAAC CGTCCTTGTGA TTTTTGACAATACGG rpsJ 1532371 - 1532679 + | 30S ribosomal protein S10 TERM 1665 1532806 - 1532825 + F 100 -13.6 -4.34402 | AAACAAAGAGGCGGG CAAGGGCC ATAG GGCCCTTG TTTTACTCTCAAGAG rplC 1532851 - 1533492 + | 50S ribosomal protein L3 rplD 1533505 - 1534125 + | 50S ribosomal protein L4 TERM 1666 1534379 - 1534361 - g 75 -10.2 -3.66732 | GAAGGATGTGAAGAA GGCGATCG TTA CGCTCGCC GAGGGTCAGTCCATC rplW 1534122 - 1534415 + | 50S ribosomal protein L23 rplB 1534427 - 1535263 + | 50S ribosomal protein L2 rpsS 1535279 - 1535557 + | 30S ribosomal protein S19 TERM 1667 1535587 - 1535575 - g 74 -6.9 -4.27584 | ATGGGCAAGGCAAAA GCCGA ACG CCGGC TGAAGGATAACGAGG rplV 1535560 - 1535949 + | 50S ribosomal protein L22 TERM 1668 1536226 - 1536199 - g 77 -13.6 -2.88758 | opp_overlap 1536206, overlap 1536206 AGAAGGGTGCAGACA TCGAAAAGCTTC GCAA GAAGCTTTCCGA GATGACCAATTCCGA TERM 1669 1536219 - 1536206 - g 72 -6.7 -4.26188 | opp_overlap 1536206, overlap 1536199 TGCAGACATCGAAAA GCTTC GCAA GAAGC TTTCCGAGATGACCA TERM 1670 1536268 - 1536244 - g 88 -15.1 -3.61764 | TGACCAATTCCGAAA CGCACCTCAAC ATT GTTGAAGTGCG CAAGCCGGAAGTCGA rpsC 1535982 - 1536662 + | 30S ribosomal protein S3 rplP 1536700 - 1537113 + | 50S ribosomal protein L16 rpmC 1537124 - 1537324 + | 50S ribosomal protein L29 rpsQ 1537340 - 1537576 + | 30S ribosomal protein S17 TERM 1671 1537640 - 1537673 + F 82 -11.8 -3.53012 | opp_overlap 1537629 1537649, overlap 1537646 AGAAGCACCGCAACG GCGCAAGAACGCTC CATCGA GAGCGTTCTTTTGC TTTGAGCGCAGGGAA TERM 1672 1537646 - 1537667 + F 93 -10.2 -4.54727 | opp_overlap 1537649, overlap 1537640 ACCGCAACGGCGCAA GAACGCTC CATCGA GAGCGTTC TTTTGCTTTGAGCGC rplN 1537810 - 1538178 + | 50S ribosomal protein L14 rplX 1538194 - 1538502 + | 50S ribosomal protein L24 rplE 1538495 - 1539052 + | 50S ribosomal protein L5 rpsN 1539086 - 1539391 + | 30S ribosomal protein S14 rpsH 1539404 - 1539802 + | 30S ribosomal protein S8 rplF 1539845 - 1540378 + | 50S ribosomal protein L6 rplR 1540391 - 1540753 + | 50S ribosomal protein L18 TERM 1673 1540791 - 1540758 - f 76 -10.9 -3.33696 | opp_overlap 1540761, overlap 1540760 1540761 TGTCGTTCTAAGGAA TAGCCGCCCGGATGC TCTT GTATCCGGGCGGTTT CGCGGCTTTGCCGCA TERM 1674 1540789 - 1540760 - f 85 -13.5 -3.23853 | opp_overlap 1540761, overlap 1540758 1540761 TCGTTCTAAGGAATA GCCGCCCGGATGC TCTT GTATCCGGGCGGT TTCGCGGCTTTGCCG TERM 1675 1540761 - 1540788 + F 100 -19.2 -3.5936 | opp_overlap 1540760 1540758 1540761 CGTTCTAAGGAATAG CCGCCCGGATGC TCTT GTATCCGGGCGG TTTCGCGGCTTTGCC TERM 1676 1540788 - 1540761 - f 95 -17 -2.54098 | opp_overlap 1540761, overlap 1540760 1540758 CGTTCTAAGGAATAG CCGCCCGGATGC TCTT GTATCCGGGCGG TTTCGCGGCTTTGCC TERM 1677 1540996 - 1541020 + G 70 -4.1 -4.56914 | overlap 1540999 1541000 CCATCAATCGCGTCG CCAAGGTCGTC AAG GGCGGCCGTCG TTTTGGTTTCGCTGC rpsE 1540899 - 1541468 + | 30s ribosomal protein S5 Avi_1861 1541480 - 1541683 + | 50S ribosomal protein L30 rplO 1541700 - 1542179 + | 50S ribosomal protein L15 TERM 1678 1542222 - 1542190 - f 77 -11.9 -3.18434 | opp_overlap 1542193, overlap 1542188 1542193 AATAATCGATTAATA TTATCGCCCGGGGTG CTT CACACCGGGCGATTT TTCTACCATATGTGT TERM 1679 1542219 - 1542193 - f 100 -18 -2.78266 | opp_overlap 1542193, overlap 1542190 1542188 AATCGATTAATATTA TCGCCCGGGGTG CTT CACACCGGGCGA TTTTTCTACCATATG TERM 1680 1542193 - 1542219 + F 100 -18 -4.8667 | opp_overlap 1542190 1542188 1542193 AATCGATTAATATTA TCGCCCGGGGTG CTT CACACCGGGCGA TTTTTCTACCATATG TERM 1681 1542258 - 1542314 + F 100 -29.1 -4.68593 | overlap 1542254 1542259 GCGACCCATTGGCGG CTCCTGTGTCGCTTTCTCCCCAAATCA TCC TGGTTTGGGGAGAAAGCGACACAGCAC TTTTTGAGTGATAAA TERM 1682 1542259 - 1542313 + F 100 -32.6 -3.40674 | overlap 1542254 1542258 CGACCCATTGGCGGC TCCTGTGTCGCTTTCTCCCCAAATCA TCC TGGTTTGGGGAGAAAGCGACACAGCA CTTTTTGAGTGATAA prlA 1542521 - 1543861 + | Preprotein translocase SECY subunit adk 1543858 - 1544508 + | adenylate kinase rpsM 1544738 - 1545106 + | 30S ribosomal protein S13 TERM 1683 1545130 - 1545151 + F 100 -13.7 -3.73106 | GTATGGCGAGCTTGA GGCTGGCAC GTCA GTGCCGGCC TTGTTGCAGTTTTGG rpsK 1545239 - 1545628 + | 30S ribosomal protein S11 rpoA 1545728 - 1546738 + | DNA-directed RNA polymerase alpha subunit TERM 1684 1546820 - 1546810 - f 72 -8.2 -3.73224 | GTATGTGTCAGGAAA CGGC AGG GCCG CAACAAGCGCGGGAA rplQ 1546858 - 1547283 + | 50S ribosomal protein L17 TERM 1685 1547315 - 1547338 + F 100 -18.2 -5.41787 | AGTCGTTTGTTTCAG GGCCGGATGG GAAA CCATCCGGCC TTTTTCTGTTTTTTG TERM 1686 1547347 - 1547369 + F 82 -7.8 -4.57073 | TCCGGCCTTTTTCTG TTTTTTGGCT TGC AGCCGGAAAA TTTTTCGAGGGAGTC Avi_1872 1547496 - 1548590 + | Purine nucleoside permease protein TERM 1687 1548657 - 1548646 - f 82 -3 -5.18726 | GCTCCACAATAAAAA TCAA GGCA TTGA GGACGCGGTGTGTTT TERM 1688 1548920 - 1548910 - f 91 -5.4 -5.38951 | AAGCCATATAAAAAA TCCT ATG AGGA TAAATGCCACAAACA Avi_1875 1549719 - 1550102 + | hypothetical protein TERM 1689 1550200 - 1550160 - T 100 -16.3 -2.57013 | overlap 1550156 GCTGAACTGAATGGA TTCGAGCCTGTCGGGTTCA ATC TAAACCTGACAGGCTTGAA GACGAATTGACCGGC Avi_1877 1551660 - 1550227 - | thiosulfate sulfurtransferase alaS 1552415 - 1551678 - | alanyl-tRNA synthetase cysK 1553458 - 1552421 - | cysteine synthase TERM 1690 1552830 - 1552842 + g 75 -9.1 -4.07687 | GCGGCTCCTTCGGGA TCGGC AAG GCCGA TTTTGACGCCGGGCT TERM 1691 1553462 - 1553495 + r 72 -6.9 -4.2349 | GTGGAATGCCATGAG CGCACTTTCTGTT TCCCGAAC AATAGAAAGTGTG TTTTCGGTCTACAAG Avi_1880 1555054 - 1553603 - | DNA photolyase TERM 1692 1553638 - 1553655 + g 70 -4.8 -4.50976 | overlap 1553635 ATTTATAAGCCTCAA GGGCCA CGGCTC TGGCTC TTTTGTGATCTACCA TERM 1693 1555193 - 1555204 + r 75 -7.2 -4.30576 | GCGCCACCCGCTCTG CCGG CCTG CCGG TTTTGCTCCTGGCGG Avi_1882 1556857 - 1555565 - | membrane protein associated metalloendopeptidase Avi_1883 1557780 - 1556998 - | hypothetical protein bcp 1558355 - 1557882 - | bacterioferritin comigratory protein Avi_1887 1558576 - 1562001 + | hypothetical protein Avi_1888 1563234 - 1562062 - | hypothetical protein avsI 1564070 - 1563426 - | autoinducer synthesis protein TERM 1694 1563647 - 1563624 - G 75 -5.4 -4.57073 | gap 1 CATCCGCTCCAAAAA CACATCTGTCA CGG TGAC-GATATG CGTAAGCCCCGATGC TERM 1695 1564154 - 1564117 - R 85 -2.7 -5.44721 | opp_overlap 1564128, overlap 1564119 1564128 ATGAGTGTAAAAAAA TCCCAATAAAACTGACG GTAG CGACAGTTTAACTGACA AGAATTGACCGTTAA TERM 1696 1564143 - 1564128 - R 72 -4.6 -4.70613 | opp_overlap 1564128, overlap 1564119 1564117 AAAATCCCAATAAAA CTGACG GTAG CGACAG TTTAACTGACAAGAA avsR 1565111 - 1564371 - | transcriptional regulator LuxR family TERM 1697 1565262 - 1565240 - R 86 -12.8 -3.42503 | TTCGAACACCGACAA CTCCGTTTCC CAA GGAAACAGAG CAAGGGAAACAGAGC TERM 1698 1565427 - 1565399 - R 100 -17.6 -5.82316 | opp_overlap 1565402 AGCAGGCAAAAAAAA TCACCCAGGTTC GGAAT GAACCTGGGTGA TTACAGAATACGAAA TERM 1699 1565402 - 1565424 + r 85 -14.2 -2.71731 | opp_overlap 1565399 AGGCAAAAAAAATCA CCCAGGTTCG GAA TGAACCTGGG TGATTACAGAATACG maeB 1567764 - 1565458 - | NADP-dependent malic enzyme TERM 1700 1566454 - 1566436 - G 71 -13.2 -2.61695 | opp_overlap 1566413, overlap 1566435 1566433 1566451 TGCATTGGCAAAGAT CGGCTTCA TGA TGAAGCCG GAGCGGAACACGAAA TERM 1701 1568175 - 1568156 - g 72 -8.6 -3.86015 | gap 1 GATGTGGTGCAGAAA TTGCTGCGC AAG GCGC-GCAA GGGGACAAGAATTGT TERM 1702 1568542 - 1568513 - g 77 -10.8 -3.9398 | gap 1, overlap 1568528 GGAGAATTCCAGAAA GTCGTTGCCGACG AAGCG CGCCG-CAACGAC GTGCATGGGGTGATC Avi_1892 1567946 - 1568806 + | hypothetical protein Avi_1893 1568994 - 1570124 + | ABC transporter membrane spanning protein TERM 1703 1570988 - 1570972 - g 75 -9.3 -3.86835 | opp_overlap 1570962, overlap 1570941 1570973 CCAAACATCAGGAAA TGCGCGG CAC CCGCGCG ATTGCCGGCACGATT TERM 1704 1570987 - 1570973 - g 74 -12.8 -2.91378 | opp_overlap 1570962, overlap 1570941 1570972 CAAACATCAGGAAAT GCGCGG CAC CCGCGC GATTGCCGGCACGAT Avi_1894 1570149 - 1571009 + | ABC transporter nucleotide binding/ATPase protein Avi_1895 1571016 - 1572383 + | ABC transporter substrate binding protein Avi_1896 1572413 - 1573027 + | hypothetical protein Avi_1897 1574470 - 1573046 - | transcriptional regulator GntR family Avi_1898 1575479 - 1574922 - | hypothetical protein TERM 1705 1575450 - 1575437 - G 72 -5.2 -4.49756 | opp_overlap 1575439, overlap 1575439 TCGTAAACAGTAAAA GGCC GGTCAA GGCC GGTGCTTTTATCGAA TERM 1706 1575493 - 1575522 + r 70 -7.2 -4.06903 | gap 1, opp_overlap 1575492 ATTATTATTCAAATT CCTCGTTCGAATC CCGAT GATTCGC-CGAGG TTTAATTTGCCAATT Avi_1901 1575974 - 1575630 - | hypothetical protein purQ 1576735 - 1576061 - | phosphoribosylformylglycinamidine synthase I TERM 1707 1576115 - 1576129 + g 76 -12.8 -3.09681 | GCCCCGACCGTCATT GCCGCC ATG GGCGGC TTCGATCAGGTTTTC purS 1577174 - 1576932 - | phosphoribosylformylglycinamidine synthase purS protein purC 1577955 - 1577191 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1708 1577219 - 1577230 + g 70 -4.4 -4.46615 | opp_overlap 1577206 1577205, overlap 1577210 ACCGGGCCGGTGCCG CGAA CGGG TTCG TTTTCATTGATGATG TERM 1709 1578246 - 1578223 - R 72 -8.9 -3.84246 | TGCCGAACCACGAAA TCCATGGCC GTAGAA AGCCATGGA TAAGTCAGTCCTCGG Avi_1908 1578811 - 1578251 - | hypothetical protein Avi_1909 1578954 - 1580624 + | hypothetical protein TERM 1710 1580670 - 1580681 + F 75 -7.2 -4.30719 | CTTTCCCCTTTCCAG GCCG ATAG CGGC TTTGTTATGAAGGCA TERM 1711 1580686 - 1580729 + F 100 -23.5 -4.44915 | opp_overlap 1580693, overlap 1580714 1580727 CCGATAGCGGCTTTG TTATGAAGGCATCGCGCAT TTTCAC ATGCGCGATGCCTTCATGA TTTTATAAATCATTC TERM 1712 1580722 - 1580693 - f 100 -18 -3.14132 | opp_overlap 1580686 1580714 CGGCTTTGTTATGAA GGCATCGCGCAT TTTCAC ATGCGCGATGCC TTCATGATTTTATAA Avi_1910 1581106 - 1582347 + | GGDEF family protein TERM 1713 1582370 - 1582410 + T 100 -12.5 -4.7254 | overlap 1582373 1582374 1582375 AAAATTGCTGGTAAG GGGAATGCCAAGCGCCATC TTT GAGGGCGCTTGGCAAATTC TTTTTCATCAGAGGT TERM 1714 1582373 - 1582407 + T 100 -12.8 -4.47707 | overlap 1582370 1582374 1582375 ATTGCTGGTAAGGGG AATGCCAAGCGCCATC TTT GAGGGCGCTTGGCAAA TTCTTTTTCATCAGA TERM 1715 1582374 - 1582406 + T 100 -16.3 -3.27901 | overlap 1582373 1582370 1582375 TTGCTGGTAAGGGGA ATGCCAAGCGCCATC TTT GAGGGCGCTTGGCAA ATTCTTTTTCATCAG TERM 1716 1582375 - 1582405 + T 100 -19.8 -2.56018 | overlap 1582374 1582373 1582370 TGCTGGTAAGGGGAA TGCCAAGCGCCATC TTT GAGGGCGCTTGGCA AATTCTTTTTCATCA gst 1583081 - 1582458 - | glutathione S-transferase TERM 1717 1583233 - 1583203 - R 81 -6.2 -4.78237 | overlap 1583206 TATTCGACAATAAAA TACGGAAAGTCATT TTC AATGGCTCTCCCTA TAACGCGAAAACCCG TERM 1718 1583269 - 1583237 - R 76 -10.7 -3.28712 | gap 1, opp_overlap 1583245, overlap 1583238 1583245 TGGCTCTCCCTATAA CGCGAAAACCCGGC GCGATG GCCGGGTTTT-GCA AAACGTGTGACGGCT TERM 1719 1583268 - 1583238 - R 73 -12 -2.57132 | gap 1, opp_overlap 1583245, overlap 1583237 1583245 GGCTCTCCCTATAAC GCGAAAACCCGGC GCGATG GCCGGGTTTT-GC AAAACGTGTGACGGC TERM 1720 1583245 - 1583262 + r 83 -9.8 -4.08394 | opp_overlap 1583238 1583237 1583245 CCTATAACGCGAAAA CCCGGC GCGATG GCCGGG TTTTGCAAAACGTGT TERM 1721 1583262 - 1583245 - R 85 -9.8 -4.21936 | opp_overlap 1583245, overlap 1583238 1583237 CCTATAACGCGAAAA CCCGGC GCGATG GCCGGG TTTTGCAAAACGTGT icdA 1584498 - 1583284 - | isocitrate dehydrogenase TERM 1722 1584752 - 1584769 + G 72 -8.4 -3.84406 | GCGAGCGCGAGCTTA TCGCCG AGGGAC CGGCGA TTATTCTGGTGGAAC TERM 1723 1585098 - 1585082 - g 74 -2.2 -5.00616 | TGGCTGGTGAAAAAA CCGGAA TTCTG TTCGGG CGGGAAAAATCCGGC lasT 1584721 - 1585581 + | tRNA/rRNA methyltransferase murI 1585562 - 1586371 + | glutamate racemase Avi_1917 1586884 - 1586402 - | hypothetical protein TERM 1724 1587312 - 1587324 + H 77 -3.3 -5.14163 | GGTCTTTGTAGGGCT CATCC TAG GGTTG TTTTTCTTGATAAAT tlyC 1587694 - 1588986 + | hemolysin Avi_1920 1589063 - 1590643 + | hypothetical protein TERM 1725 1591656 - 1591616 - g 74 -8.3 -4.12188 | opp_overlap 1591620, overlap 1591604 1591617 GGAGCATGGGGAAAA CGCC-CAGGCCGCCGGTGC TCTGG ACACCGGCG-CTTGAGGCA TGGATGCGGGACCAC Avi_1921 1590700 - 1591683 + | hypothetical protein TERM 1726 1591675 - 1591733 + T 93 -13.3 -3.64049 | opp_overlap 1591675, overlap 1591691 ATGCGGGACCACAAT CTGATTTGATCCAGCATCGTACCGAAA CCGGT TTTCGGTACGATGCTATAGCGCGTCAG TTTGCCCGTTCTTCC TERM 1727 1591691 - 1591717 + T 84 -13.9 -2.62616 | opp_overlap 1591675, overlap 1591675 TGATTTGATCCAGCA TCGTACCGAAA CCGGT TTTCGGTACGA TGCTATAGCGCGTCA Avi_1922 1592965 - 1591730 - | Peptidase T protein TERM 1728 1592388 - 1592399 + g 75 -5.8 -4.62069 | opp_overlap 1592388, overlap 1592372 ATGGTGTAGCCAAAA GCTG CGCC CAGC TTTTTCAGGTCGACC Avi_1923 1593763 - 1594467 + | Carbonic anhydrase protein TERM 1729 1594575 - 1594604 + G 71 -11.4 -3.29144 | overlap 1594558 CTATCGCTTCCGGTG TGCCGGTGGCGA TGGGCC TCGTCTCCGGCA TTGTCGGCGGCATCG Avi_1925 1594472 - 1595998 + | hypothetical protein TERM 1730 1596028 - 1596056 + T 100 -11.7 -4.68724 | opp_overlap 1596031, overlap 1596031 AGATCCAGACACAGA AAAGGGGCGGC CCATAAA GCCGCCCCTTC TTTTATGTTGGCTGG TERM 1731 1596031 - 1596053 + T 100 -13.4 -4.44211 | opp_overlap 1596031, overlap 1596028 TCCAGACACAGAAAA GGGGCGGC CCATAAA GCCGCCCC TTCTTTTATGTTGGC TERM 1732 1596053 - 1596031 - T 100 -14.8 -4.64844 | opp_overlap 1596031 1596028 TCCAGACACAGAAAA GGGGCGGCCC ATA AAGCCGCCCC TTCTTTTATGTTGGC Avi_1926 1597138 - 1596080 - | transporter TERM 1733 1597037 - 1597021 - G 73 -3 -4.78572 | gap 1 CTGCAAGGAAGAAAA GCC-ACA TCCA TGTTGGC TTGCCCATAAAATCA TERM 1734 1597243 - 1597264 + H 100 -11.5 -4.59109 | TAGAGACCCCTCCAA CGCCGGGTG GAAA CGCCCGGTG TTTTTACGACATGTC TERM 1735 1597282 - 1597294 + H 83 -5.5 -5.1287 | TTTACGACATGTCCC GTGGA GGC TCCGC TTTTTTAGGTGTGAG rpsD 1597402 - 1598019 + | 30S ribosomal protein S4 TERM 1736 1598034 - 1598067 + F 100 -14.7 -3.53012 | opp_overlap 1598042, overlap 1598036 1598042 ATTTCGATCTGAAAT TGGAAAAAGCCGCCT TTAC GGGCGGCTTTTTCTG TTTGCAGCGCAGCAA TERM 1737 1598036 - 1598065 + F 100 -17.3 -3.34398 | opp_overlap 1598042, overlap 1598034 1598042 TTCGATCTGAAATTG GAAAAAGCCGCCT TTAC GGGCGGCTTTTTC TGTTTGCAGCGCAGC TERM 1738 1598042 - 1598059 + F 100 -10.5 -5.19879 | opp_overlap 1598042, overlap 1598036 1598034 CTGAAATTGGAAAAA GCCGCCT TTAC GGGCGGC TTTTTCTGTTTGCAG TERM 1739 1598059 - 1598042 - f 95 -9.8 -4.70879 | opp_overlap 1598042 1598036 1598034 CTGAAATTGGAAAAA GCCGCC TTTACG GGCGGC TTTTTCTGTTTGCAG TERM 1740 1599072 - 1599087 + G 72 -4.6 -4.62872 | overlap 1599071 1599074 GAACTGCTGGCAACC CGGACC GGCT GGTCGG TTTTTGGAAATTGAT glsA 1598175 - 1599101 + | glutaminase A Avi_1930 1599254 - 1600036 + | hypothetical protein TERM 1741 1600564 - 1600546 - g 72 -5.9 -4.41494 | opp_overlap 1600546 1600544 CATCGTCAAGGAAAA GGTCCCG GCGGG CGGCACC TATTGTTCGCTCTGC Avi_1931 1600133 - 1601020 + | hypothetical protein Avi_1933 1601064 - 1601900 + | inositol monophosphatase family protein TERM 1742 1602353 - 1602342 - g 70 -3.6 -4.59853 | overlap 1602343 GCAATCGTTGAAAAA GGCA GTGG CGCC TGGCTCTGCAAACCC Avi_1934 1601928 - 1602749 + | inositol monophosphatase family protein TERM 1743 1602799 - 1602775 - T 100 -21.5 -5.626 | opp_overlap 1602775 TACCCCATAAAAAAA GCCACGGCAGG TGA CCTGCCGTGGC TTTTTTGTTCGGATA TERM 1744 1602775 - 1602799 + T 100 -21.5 -5.46657 | opp_overlap 1602775 TACCCCATAAAAAAA GCCACGGCAGG TGA CCTGCCGTGGC TTTTTTGTTCGGATA Avi_1935 1604028 - 1602823 - | MFS permease TERM 1745 1604097 - 1604119 + r 76 -10.5 -3.34043 | opp_overlap 1604098, overlap 1604098 TCCTGGAAAATCAAA AGGCGTCGC AAGGC GCGACGCCC TTATCAGATACTGCA TERM 1746 1604098 - 1604118 + r 84 -14 -2.60212 | opp_overlap 1604098, overlap 1604097 CCTGGAAAATCAAAA GGCGTCGC AAGGC GCGACGCC CTTATCAGATACTGC TERM 1747 1604118 - 1604098 - R 100 -14.7 -4.67038 | opp_overlap 1604098 1604097 CCTGGAAAATCAAAA GGCGTCGCA AGG CGCGACGCC CTTATCAGATACTGC TERM 1748 1604252 - 1604270 + r 74 -8.8 -3.92522 | opp_overlap 1604252, overlap 1604267 GGTCGATGGGGACAA GCCCGG AATACCA CCGGGC TTTATCCAGTTCGCG grlA 1604621 - 1604286 - | glutaredoxin-related protein TERM 1749 1604541 - 1604529 - G 75 -9.1 -4.07885 | GACCTGGCCCGAAAA TCCGC ATT GCGGA AACTGGGGCGTGCCC Avi_1939 1605175 - 1604939 - | BolA/YrbA family protein purL 1607451 - 1605214 - | phosphoribosylformylglycinamidine synthetase II TERM 1750 1606722 - 1606743 + g 87 -8 -4.7497 | gap 1 TTTCGGTGAAGGGGT CG-CCGACC TGTAC GGTCGGGCG TTTTTCCTCGATGGA TERM 1751 1607119 - 1607097 - G 74 -7.7 -4.11216 | gap 1, overlap 1607109 CGCCCATGGTGAAAA CGTCGCGCAG AATG CCGC-CGACG CCGGTCGCAGCACCT dnaJ 1607799 - 1608410 + | molecular chaperone DnaJ family TERM 1752 1609593 - 1609579 - g 75 -10 -3.69323 | opp_overlap 1609573, overlap 1609562 GCAGCATGATCGAAA TCCTGC ACC GCAGGA TTGGCGATTTGGAGC Avi_1947 1608993 - 1609625 + | transcriptional regulator protein TERM 1753 1609620 - 1609652 + T 73 -11.3 -2.74244 | opp_overlap 1609626, overlap 1609615 1609618 GAGCAGCGGTCCAGC CGATAATGGGTGCCT TTC AGGCGCCAATTACCG TGGCTTTATATGCTG lipB 1610378 - 1609647 - | lipoyltransferase TERM 1754 1610982 - 1610966 - H 84 -10.8 -3.7282 | opp_overlap 1610966 CGACCGCACCAAGAA CCCGGC TTTAG GCCGGG TTTTTCTTTTTTGTT TERM 1755 1610966 - 1610982 + H 100 -11.5 -5.84011 | opp_overlap 1610966 CGACCGCACCAAGAA CCCGGCT TTA GGCCGGG TTTTTCTTTTTTGTT TERM 1756 1611009 - 1611033 + H 79 -12.3 -2.98823 | TGTTCAACGGGTTAA GTTTTGATGTG TCC CACGTCAAAAC TATGTGTGGGACACA Avi_1950 1611291 - 1612052 + | polysialic acid transport protein intD 1613108 - 1612077 - | phage-related integrase TERM 1757 1612621 - 1612637 + g 88 -5.7 -5.28176 | TCGGCTGATTTCCAG GGCGTTG CCC CGTCGCC TTTTTTATAGATCCG TERM 1758 1614070 - 1614050 - R 100 -8.3 -5.40072 | CTTTGCTGAAAAAAA TGCCGGA GTTCCTG TCCGGCA AGTGGAGTCTTATGC Avi_1952 1615162 - 1614155 - | hypothetical protein Avi_1954 1616190 - 1615576 - | Phage repressor protein TERM 1759 1616584 - 1616627 + H 74 -8.9 -3.85909 | gap 1, overlap 1616584 1616587 CCTCCCAGCCACGCG C-AGCCCGCACCAGGTTG TTTAGCGTC CGATCTGGTGCGGGCAAG TTTCGGTTTGCATGC TERM 1760 1616726 - 1616708 - H 91 -9.5 -4.63527 | opp_overlap 1616715 1616716 1616717 CCACCACGGGAAAAA CGCCGGA GATTT CCCGGCG CGGGAAAGGTTTTGT TERM 1761 1616715 - 1616735 + H 84 -3.9 -5.18371 | opp_overlap 1616708, overlap 1616716 1616717 GGGAAAAACGCCGGA GATTTCCCG GCG CGGGAAAGG TTTTGTTTTATGCAC TERM 1762 1616717 - 1616733 + H 70 -10.9 -2.80878 | opp_overlap 1616708, overlap 1616716 1616715 GAAAAACGCCGGAGA TTTCCCG GCG CGGGAAA GGTTTTGTTTTATGC Avi_1955 1616745 - 1617242 + | hypothetical protein TERM 1763 1617507 - 1617523 + F 90 -11.5 -3.87576 | AGTCAAGTTTCCCAA GCCCGGT TCT GCCGGGC TTTCCCTTATTCTCG Avi_1959 1617561 - 1618121 + | hypothetical protein Avi_1961 1618118 - 1618411 + | hypothetical protein Avi_1963 1618408 - 1619691 + | hypothetical protein Avi_1964 1619678 - 1620334 + | Transcription antiterminator protein TERM 1764 1620506 - 1620523 + F 100 -10.5 -4.74103 | GATGAATGATGACGA GGCGGCC AGAT GGTCGCC TTTTTGCGTTCAAGG Avi_1966 1621003 - 1621470 + | Phage terminase protein Avi_1967 1621454 - 1623268 + | Phage terminase protein TERM 1765 1624491 - 1624479 - gf 71 -9.1 -3.51924 | GTGTCATCGACACAA GTGCC CCC GGCAC AAATGCGATGGGCGA Avi_1968 1623281 - 1624588 + | hypothetical protein Avi_1969 1624563 - 1625159 + | prohead protease protein Avi_1970 1625195 - 1626472 + | major capsid-like protein TERM 1766 1626510 - 1626462 - f 81 -12.6 -3.15574 | gap 2, opp_overlap 1626485 1626486, overlap 1626452 1626460 TCAAGGCCATGAAGA CGG-CGGC-CTGATCGCGCC TGGTCACGGTC GGCGCAATCAGCGCCGACCG GTTTCCTGATTGGAG TERM 1767 1626485 - 1626511 + F 100 -15.1 -3.84246 | opp_overlap 1626460 1626462, overlap 1626486 TGATCGCGCCTGGTC ACGGTCGGCGC AATCA GCGCCGACCGG TTTCCTGATTGGAGA TERM 1768 1626486 - 1626510 + F 100 -18.6 -2.90227 | opp_overlap 1626460 1626462, overlap 1626485 GATCGCGCCTGGTCA CGGTCGGCGC AATCA GCGCCGACCG GTTTCCTGATTGGAG Avi_1973 1626811 - 1627359 + | hypothetical protein Avi_1977 1627890 - 1628351 + | hypothetical protein Avi_1978 1628348 - 1628755 + | hypothetical protein Avi_1979 1628782 - 1629225 + | hypothetical protein TERM 1769 1629580 - 1629566 - T 77 -7 -4.54727 | overlap 1629568 CGCGGCAAATCAAAA GGGGGC AAT GCCCTC GACGACCTTCCCAAC TERM 1770 1629940 - 1629896 - T 88 -12.2 -3.58905 | gap 1, overlap 1629897 ACGTTGCATATATAA GCCGCTACAGCGCCCCGCACG CTTT CATGCAAGTCGCTGTAACG-C AGATGCGCATGTGAA TERM 1771 1629940 - 1629897 - T 77 -12.4 -2.75022 | overlap 1629896 CGTTGCATATATAAG CCGCTACAGCGCCCCGCACG CTTT CATGCAAGTCGCTGTAACGC AGATGCGCATGTGAA rfbA 1630828 - 1629965 - | glucose-1-phosphate thymidylyltransferase TERM 1772 1630878 - 1630888 + r 72 -6.8 -4.18018 | opp_overlap 1630878 1630877 GTCTTTTGAGGAAAG CTGG CGA CCAG TTTTCCCTAGACAAA rfbD 1631811 - 1630906 - | dTDP-4-dehydrorhamnose reductase rfbB 1632866 - 1631808 - | dTDP-glucose 4,6-dehydratase rfbC 1633484 - 1632921 - | dTDP-4-dehydrorhamnose 3,5-epimerase Avi_1989 1633850 - 1633668 - | endo-polygalacturonase precursor protein TERM 1773 1635780 - 1635754 - g 74 -7.8 -4.13014 | overlap 1635757 CCGATACCGGCAAAA CGACCGCCGCGC CGA GAGCGACGGCAG ATGACCGGCTCGACA TERM 1774 1635894 - 1635881 - g 85 -9.5 -4.4261 | overlap 1635883 CCGTCAACAGGAAAA GCGCC GCAT GGCGC TCGATCTCGAACAGC Avi_1990 1633917 - 1636664 + | tail component of prophage protein Avi_1991 1636661 - 1637287 + | hypothetical protein TERM 1775 1637442 - 1637475 + G 93 -12.5 -4.11216 | gap 1, overlap 1637466 CTCTGCCGAGGTCGT GCATCCTGACACCGGC AAC GCTGATGTCAGGA-GC TTTTACGGCTCCGGC Avi_1992 1637287 - 1637973 + | hypothetical protein TERM 1776 1639960 - 1639944 - g 71 -7.9 -3.97947 | opp_overlap 1639944, overlap 1639947 GGGAGCGATTATAAA CCACCGG TCA CCGGCAG TGTGTCCAGCGGCGT TERM 1777 1642299 - 1642330 + G 95 -13.8 -4.14874 | AAGCTTGCGGCCAAT TCCGTCACCGCCAA GCAG TTGGTGCTGACGGA TTTTACCAATCTTGT TERM 1778 1642716 - 1642672 - g 83 -13.9 -3.40403 | gap 3, opp_overlap 1642665 1642678, overlap 1642679 GCGTCGTCACGACAA CCATCA-A-CCTGA-CTGCGCC CGCT GGCGCAGTTCAGGCTGTGATGG CCGCTTACGTGTGGC TERM 1779 1642678 - 1642708 + G 70 -11.9 -2.79133 | gap 1, opp_overlap 1642672 1642679, overlap 1642665 TCACGACAACCATCA ACCTGA-CTGCGCC CGCT GGCGCAGTTCAGGC TGTGATGGCCGCTTA TERM 1780 1642707 - 1642679 - g 87 -15.4 -3.31188 | gap 1, opp_overlap 1642678 1642665, overlap 1642672 CACGACAACCATCAA CCTGA-CTGCGCC CGCT GGCGCAGTTCAGG CTGTGATGGCCGCTT Avi_1994 1638261 - 1642955 + | phage tail fiber protein TERM 1781 1643133 - 1643110 - g 70 -12.4 -2.79803 | gap 1, opp_overlap 1643125, overlap 1643109 CAACGCCATCCAAAC CGGGGCGACCG GAA CGA-CGCCCCG CGGCTACTATCCGTC Avi_1995 1642952 - 1644448 + | hypothetical protein Avi_1996 1644464 - 1645069 + | hypothetical protein Avi_1998 1645676 - 1645317 - | hypothetical protein Avi_2000 1645931 - 1645680 - | hypothetical protein TERM 1782 1646480 - 1646501 + G 78 -3 -5.08824 | gap 1, overlap 1646483 1646488 TGAGCGACGGCCTGT TCA-CCGGC GTCAA GCTGGCTGA TTTTTTCCATGGCAC Avi_2001 1646008 - 1646625 + | hypothetical protein TERM 1783 1647023 - 1646999 - g 72 -8.6 -3.90744 | gap 1 TCGTCGCTGAAAGAA GCTGGCCGGAC TGAG ATCCG-CCAGC AATGGGCAGAGGCTC Avi_2003 1646861 - 1647298 + | HlyD family secretion protein TERM 1784 1647431 - 1647410 - f 73 -9.4 -3.70149 | gap 1 GGGACAGGACCGAAA GGCGCTGGC CGATT GCC-GCGCC ACAAATGCCGCGAAG TERM 1785 1647509 - 1647497 - g 81 -9.1 -4.26188 | GTGACAGACGGAAAA GTGGC AAC GCCAC CGAAATACAATATCA Avi_2005 1647482 - 1647868 + | hypothetical protein TERM 1786 1647900 - 1647877 - T 78 -11 -3.42056 | opp_overlap 1647878, overlap 1647878 ACGCTGAATCCAGAA GGCCGGAAGA TCGC TCTTCCGGCT TTTTATGTCACTTGG TERM 1787 1647878 - 1647899 + T 100 -14.5 -5.00642 | opp_overlap 1647877 1647878 CGCTGAATCCAGAAG GCCGGAAGA TCGC TCTTCCGGC TTTTTATGTCACTTG TERM 1788 1647899 - 1647878 - T 90 -14.5 -2.64912 | opp_overlap 1647878, overlap 1647877 CGCTGAATCCAGAAG GCCGGAAGA TCGC TCTTCCGGC TTTTTATGTCACTTG Avi_2007 1649505 - 1647964 - | hypothetical protein TERM 1789 1648547 - 1648532 - G 74 -2.4 -4.92757 | overlap 1648534 GCATCAATAAGAAAA GGCGCA ATGT CGCGGC CTCTGTTCTCGACCA TERM 1790 1648995 - 1648969 - G 71 -8 -4.08767 | GCGATCCTCCGAAAA GCCCCAATGCAT ATA ATGCATAAAGGC TCCAGCAGGTGTCAT TERM 1791 1649470 - 1649436 - G 100 -23.2 -5.26875 | opp_overlap 1649436 TCTTCAATGAAAAAA TAGAGTTCGCCACATT GAA AATGTGGCGAACTCTA TTTAATTGAAATATA TERM 1792 1649436 - 1649470 + g 100 -23.2 -3.92625 | opp_overlap 1649436 TCTTCAATGAAAAAA TAGAGTTCGCCACATT GAA AATGTGGCGAACTCTA TTTAATTGAAATATA TERM 1793 1649509 - 1649491 - G 82 -9 -4.52143 | TTGAAATATAATAAA TCTTATGA AAT TCATAAGA CAACTACACTCGCTT Avi_2009 1651945 - 1649513 - | glycosyl transferase Avi_2010 1654316 - 1652280 - | hypothetical protein TERM 1794 1653335 - 1653345 + g 71 -6.8 -4.16814 | CAAGTGTGCCTTCTA GCTC ATT GAGC TTGTTTGTATGATGA TERM 1795 1653410 - 1653426 + g 72 -5.8 -4.55209 | CGCGGTCTCGGACAG CCGCTT CCAAA GAGCGG TTTGTTTCCTCTATG TERM 1796 1654773 - 1654789 + r 100 -11.5 -5.84011 | opp_overlap 1654773 CGACCGCACCAAGAA CCCGGCT TTA GGCCGGG TTTTTCTTTTTTGTT TERM 1797 1654789 - 1654773 - R 84 -10.8 -3.7282 | opp_overlap 1654773 CGACCGCACCAAGAA CCCGGC TTTAG GCCGGG TTTTTCTTTTTTGTT Avi_2012 1656101 - 1655088 - | transposase TERM 1798 1655928 - 1655904 - G 71 -7.8 -4.08216 | gap 1 TGATGTTGCCGAAAA CTCGG-CGCGG CATT CCGCCTCCGAG CAACGAAATCGGCGT TERM 1799 1656418 - 1656381 - H 83 -12.9 -3.03771 | opp_overlap 1656381 1656384, overlap 1656384 GGATAGTTTCTAACA TAATCCCATCCTCCGCT CACC AGAAGAAGATGGGATTA TGCTGTCAATCCACC TERM 1800 1656415 - 1656384 - H 77 -10.2 -3.66288 | opp_overlap 1656381 1656384, overlap 1656381 TAGTTTCTAACATAA TCCCATCCTCCGCT CACC AGAAGAAGATGGGA TTATGCTGTCAATCC pemI 1656524 - 1656787 + | plasmid stable inheritance protein I pemK 1656784 - 1657146 + | plasmid stable inheritance protein K Avi_2013 1658366 - 1657659 - | hypothetical protein TERM 1801 1658326 - 1658312 - G 77 -7.8 -4.30576 | overlap 1658313 GGTTGATGATTAAAA CCGCAG TTC CTGCGA GCAGGATGCCGATGA Avi_2014 1658567 - 1658370 - | hypothetical protein Avi_2016 1659356 - 1658577 - | cobalamin 5'-phosphate synthase TERM 1802 1659232 - 1659197 - G 73 -12.4 -3.14051 | opp_overlap 1659215, overlap 1659195 1659218 TTAGGGCGAGCAACA GGCCCGCCGGGGCGGT AATG ACCGCACCGGCCAGCG GAAAGGCGCGTGGCG TERM 1803 1659413 - 1659428 + H 72 -6 -4.39989 | opp_overlap 1659412, overlap 1659415 TCCTGGAGGGAAACC GTGCCG AATC CGGCTC TTTTCATGGTTTGAT TERM 1804 1660500 - 1660520 + G 74 -11.1 -3.53811 | TTGCCTGATCGGCCA TGTCTCGGC GGA GCCGGGGCA TTTGAAGGCGATCGA Avi_2018 1659670 - 1660692 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyl transferase TERM 1805 1661070 - 1661090 + G 77 -13.3 -3.00022 | overlap 1661059 CGTTTGCAGTGTTCT GCCTGTTGG TCG CCAACGGGC TCTATATCGGCTGGG dgk 1660676 - 1661125 + | diacylglycerol kinase Avi_2021 1661157 - 1661399 + | hypothetical protein TERM 1806 1661461 - 1661484 + F 100 -18.2 -5.54885 | TTTCTGAATTTTTCA GCGCTTCCGG GAAA CCGGAAGCGC TTTTTTATTGGTGTT Avi_2022 1661670 - 1661987 + | hypothetical protein TERM 1807 1662115 - 1662093 - f 93 -13.4 -3.66999 | ATTGACTGAGCCAAA GCGCGCGG TAGGAGG CCGCGCGC TCCATCTACCAGAGG Avi_2023 1662142 - 1663575 + | Carbohydrate-selective porin protein TERM 1808 1663653 - 1663624 - T 72 -8.6 -3.78934 | gap 1, overlap 1663627 CCCTCGGCATAACAA GCACCATCAGTCC TCGTC GGGCTGATGG-GC ATCGACCCCCATGGC Avi_2024 1664217 - 1663630 - | hypothetical protein TERM 1809 1664206 - 1664189 - G 71 -12.7 -2.62263 | ATTTGGTTCATATCA TCCCCGG TAGT CCGGGGA TTCCAGGCCATCCGG def 1664745 - 1664245 - | peptide deformylase fnrN 1665489 - 1664764 - | transcriptional activator Crp family TERM 1810 1665239 - 1665260 + g 80 -10.1 -4.09739 | opp_overlap 1665237, overlap 1665242 TGCAGGCCAACGATC TGTTGGCGG CCAT CCGCCATCA TTTTCGACAGCTTGA TERM 1811 1666556 - 1666546 - g 73 -3.2 -4.72272 | CCCCTGGATGAAAAA GCAT CAA ACGC TGATTCCCGAGAGCG TERM 1812 1666609 - 1666639 + G 70 -11.8 -2.80994 | overlap 1666636 CTATGAACAGATGGT GCGGGCCTCTGCCA TGC TGGTGGAGGCTGGC TATGATGCCATTGGC hemN 1665809 - 1667161 + | oxygen-independent coproporphyrinogen III oxidase acpP 1667269 - 1667547 + | acyl carrier protein TERM 1813 1667707 - 1667757 + G 72 -9.2 -3.72695 | gap 3, opp_overlap 1667722 1667724 1667725, overlap 1667712 1667722 1667745 1667746 CTTGAAGGCCCAATC GGTGGTGC-CGGAAAATAGCCC-CG TCTT CGAGGGCCATTTTCCGGGCAT-GCC TTTGGTGCCCGGCGT TERM 1814 1667712 - 1667753 + G 71 -13.2 -2.67803 | gap 2, opp_overlap 1667722 1667724 1667725, overlap 1667707 1667722 1667745 1667746 AGGCCCAATCGGTGG TGC-CGGAAAATAGCCC-CG TCTT CGAGGGCCATTTTCCGGGCA TGCCTTTGGTGCCCG Avi_2030 1667630 - 1668103 + | hydroxymyristoyl-acyl carrier protein dehydratase TERM 1815 1668267 - 1668220 - f 73 -9.3 -3.5944 | gap 1, opp_overlap 1668230 1668233 1668251, overlap 1668221 1668233 AGTGAGATCTTTAAA GTTTCGTCAATAAGGCCGCG GCTTTTGTG CGCGGCCTTATTG-CGTAAA GCCGTCTGTCGGAGT TERM 1816 1668266 - 1668221 - f 77 -12.8 -2.75343 | gap 1, opp_overlap 1668230 1668233 1668251, overlap 1668220 1668233 GTGAGATCTTTAAAG TTTCGTCAATAAGGCCGCG GCTTTTGTG CGCGGCCTTATTG-CGTAA AGCCGTCTGTCGGAG TERM 1817 1668230 - 1668258 + F 75 -11.8 -3.05596 | gap 1, opp_overlap 1668221 1668220 1668233, overlap 1668233 1668251 TTAAAGTTTCGTCAA TAAGGCCGCG-GC TTTT GTGCGCGGCCTTA TTGCGTAAAGCCGTC TERM 1818 1668255 - 1668233 - f 73 -9.1 -3.61894 | opp_overlap 1668230 1668233 1668251, overlap 1668221 1668220 AAGTTTCGTCAATAA GGCCGCG GCTTTTGTG CGCGGCC TTATTGCGTAAAGCC TERM 1819 1668233 - 1668255 + F 73 -9.1 -3.67597 | gap 1, opp_overlap 1668233 1668221 1668220, overlap 1668230 1668251 AAGTTTCGTCAATAA GGCCGCG-GC TTTT GTGCGCGGCC TTATTGCGTAAAGCC TERM 1820 1669383 - 1669350 - g 71 -8.1 -4.07568 | opp_overlap 1669341 TTCTGCCCGGGAAAA GACCGCGCTTGAAAA AGCC TTTCCAGGTGCGGCC ATTCGCGGTTTCGCT Avi_2033 1668394 - 1669599 + | 3-oxoacyl-(acyl-carrier-protein) synthase II fabF 1669610 - 1670911 + | 3-oxoacyl-(acyl-carrier-protein) synthase II TERM 1821 1671887 - 1671872 - g 78 -9 -4.18018 | CTGCCGGATGGAAAA CATGGC CAAT GCCATG CAGAAAATGGCTCGC Avi_2036 1670988 - 1672016 + | NADPH:quinone reductase TERM 1822 1672245 - 1672235 - g 79 -6.8 -4.56597 | GCCTTTCCGGAAAAA TCCG AGG CGGA AATCGAGACCGTCGC TERM 1823 1672452 - 1672478 + G 71 -7.8 -4.04206 | opp_overlap 1672450, overlap 1672450 1672453 GCAATTTCGAAATGC TGCCGGTGGCGG GCG CTGCCTTCGGCC TTTATGTAACGGTGC msbB 1672019 - 1672951 + | lipid A biosynthesis lauroyl acyltransferase Avi_2038 1673915 - 1672935 - | hypothetical protein nadE 1674583 - 1676262 + | NAD synthetase tolB 1676270 - 1677103 + | periplasmic component of the Tol biopolymer transport system TERM 1824 1677403 - 1677422 + G 87 -7.8 -4.82901 | GACTTAGTGAACGAT GCTCTGGT GTCT GCCGGAGC TTTTTCTGCCGAAGA Avi_2042 1677382 - 1678068 + | nitroreductase TERM 1825 1678059 - 1678074 + T 70 -4.6 -4.50976 | overlap 1678054 TGAGGGGTGGCAAGG TGCCGG ATGA CGGGCA TTTTGTAATATCGAA Avi_2043 1678730 - 1678146 - | transcriptional regulatory protein TERM 1826 1678776 - 1678766 - H 77 -6.8 -4.45083 | overlap 1678767 1678769 TGGATACCCATAAAA GGAC GGA GTCC GATTCCGGCGAGTAA TERM 1827 1678899 - 1678914 + G 70 -4.6 -4.42118 | TCCTTTTGTTTCTAT CCGTTC TGTG GGGCGG TTCTTTCTTCTTTTC Avi_2044 1678862 - 1679776 + | ABC transporter membrane spanning protein ada 1679773 - 1680279 + | methylated-DNA--protein-cysteinemethyltransferase tyrS 1681617 - 1680361 - | tyrosyl-tRNA synthetase TERM 1828 1680508 - 1680540 + g 88 -15.5 -3.57144 | GCCTTGCACATGGCG GCGGGCTTCGCCGTT GGA GGCGGCGAGGCCGGC TTTGACGATCAGGGC TERM 1829 1681302 - 1681322 + g 72 -6.2 -4.37886 | gap 1 CGAAGCAGCGCTTGA TCGAGG-CA ATAT TGTCCTCGA TTTTGTCCACGGTCA TERM 1830 1682871 - 1682896 + G 74 -8.3 -4.25283 | gap 1, opp_overlap 1682870, overlap 1682855 CGGTGTCCATCAGAT GCCGCT-GGTCT GCG AGACGGAGCGGC TTTTGCTGACCCCAT Avi_2047 1681789 - 1683378 + | hypothetical protein Avi_2049 1683774 - 1683430 - | hypothetical protein TERM 1831 1683818 - 1683797 - H 100 -14.5 -5.71712 | opp_overlap 1683797 TCGGATAGAAAAAAA GCCGGATCA GAAA TGATCCGGC TTTATAATGTCAGCT TERM 1832 1683797 - 1683818 + H 100 -14.5 -4.01888 | opp_overlap 1683797 TCGGATAGAAAAAAA GCCGGATCA GAAA TGATCCGGC TTTATAATGTCAGCT Avi_2050 1684098 - 1684409 + | hypothetical protein Avi_2051 1685964 - 1684429 - | two component sensor kinase exoI 1686095 - 1686610 + | succinoglycan biosynthesis protein Avi_2054 1686607 - 1687242 + | hypothetical protein TERM 1833 1687240 - 1687258 + F 72 -8.2 -3.74747 | overlap 1687241 GATCACTGTCTGCGG TGAAAGCA TTT TGCTTTCG TTTGCTCCAAATTGC Avi_2055 1687308 - 1687796 + | transcriptional regulator AsnC family TERM 1834 1687794 - 1687836 + T 100 -11.6 -4.56597 | gap 2, opp_overlap 1687794 1687797, overlap 1687794 1687799 1687800 AAGTCTGGCGAAGAA TGATGA--TTGGGGGAGCCT GAGAG AGGCTCCCCCAAATTCATTA TTTTTCCAGCCGGGC TERM 1835 1687794 - 1687833 + T 100 -12.3 -4.40561 | gap 1, opp_overlap 1687794 1687797, overlap 1687794 1687799 1687800 AAGTCTGGCGAAGAA TGATGATTGGGGGAGCCT GAGAG AGGCTCCCCCAAAT-TCA TTATTTTTCCAGCCG TERM 1836 1687833 - 1687794 - T 77 -10.1 -3.61894 | gap 1, opp_overlap 1687794 1687794 1687799 1687800, overlap 1687797 AAGTCTGGCGAAGAA TGATGATTGGGGGAGCCT GAGAG AGGCTCCCCCAAAT-TCA TTATTTTTCCAGCCG TERM 1837 1687833 - 1687797 - T 71 -11.1 -2.93073 | gap 2, opp_overlap 1687794 1687794 1687799 1687800, overlap 1687794 TCTGGCGAAGAATGA TGA--TTGGGGGAGCCT GAGAG AGGCTCCCCCAAATTCA TTATTTTTCCAGCCG TERM 1838 1687799 - 1687829 + T 100 -15.5 -3.74868 | opp_overlap 1687794 1687797, overlap 1687794 1687794 1687800 TGGCGAAGAATGATG ATTGGGGGAGCCT GAGAG AGGCTCCCCCAAA TTCATTATTTTTCCA TERM 1839 1687800 - 1687828 + T 100 -19 -2.83836 | opp_overlap 1687794 1687797, overlap 1687799 1687794 1687794 GGCGAAGAATGATGA TTGGGGGAGCCT GAGAG AGGCTCCCCCAA ATTCATTATTTTTCC mmsB 1688703 - 1687834 - | 3-hydroxyisobutyrate dehydrogenase TERM 1840 1688571 - 1688585 + g 74 -11.4 -3.60792 | opp_overlap 1688563 CAAGCGACCCGCCGT GCTGGG CTA CCCAGC TTTCGGCCTTGGCCG pip 1689783 - 1688809 - | proline iminopeptidase Avi_2059 1690530 - 1689805 - | hypothetical protein TERM 1841 1690182 - 1690201 + g 71 -7.8 -4.08216 | CGTAAAGGTCTTTCT CATGGGCG ATCT CGACCATG TTTTCCGAAAGATCG usg 1691118 - 1690810 - | usg protein Avi_2064 1692140 - 1691310 - | ABC transporter membrane spanning protein (amino acid) Avi_2065 1692940 - 1692137 - | ABC transporter membrane spanning protein (amino acid) TERM 1842 1692954 - 1692973 + r 100 -5.6 -5.58522 | overlap 1692956 ATTTAGCCAATTCCC CTTGCGGT CTTT GCCGCATG TTTTTGTTTTGTCTG TERM 1843 1692956 - 1692971 + r 75 -6.8 -4.39746 | overlap 1692954 TTAGCCAATTCCCCT TGCGGT CTTT GCCGCA TGTTTTTGTTTTGTC TERM 1844 1692990 - 1693022 + r 100 -16.4 -3.03635 | gap 1 TTTTGTTTTGTCTGT TGTGCGTGATCCGGG TAGG CCCGGATCACGC-CG TCTTAAACCGATTTA Avi_2066 1693811 - 1693035 - | ABC transporter substrate binding protein (amino acid) TERM 1845 1693601 - 1693621 + g 80 -9.8 -4.15044 | CCCAATCATTGGTCT TGAAGGTG CATGT CACCTTCA TTTCTTCGCAAAGCG TERM 1846 1694083 - 1694067 - H 74 -8.7 -3.99494 | overlap 1694068 CGAATTCAAGAACAA CGAGGCA AAA TGCCTCA ACTGCGAGGAAAACC TERM 1847 1694649 - 1694637 - g 77 -2.6 -5.10208 | GAACCGCAAGAAAAA CCGG TGAAG CCGA AGAAGAACGAAGCTC Avi_2068 1694076 - 1696718 + | OmpA family protein TERM 1848 1696762 - 1696739 - T 100 -18.2 -3.24747 | opp_overlap 1696739 CTCGGATATCATCAA TGCCGCCGGA GCGA TCCGGCGGCA TTTTTATTTGCAAAG TERM 1849 1696739 - 1696762 + T 100 -18.2 -5.27335 | opp_overlap 1696739 CTCGGATATCATCAA TGCCGCCGGA GCGA TCCGGCGGCA TTTTTATTTGCAAAG mobB 1697293 - 1696766 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 1850 1696923 - 1696941 + g 78 -8.8 -4.11394 | GCGCCGTTCTTTGCG TCCAGGCG TCG CGCCTCGA TTTTCGGGATGGCCT mobA 1697921 - 1697280 - | molybdopterin-guanine dinucleotide biosynthesis protein A Avi_2071 1698829 - 1697936 - | hypothetical protein moaA 1699921 - 1698932 - | molybdenum cofactor biosynthesis protein A Avi_2074 1700376 - 1700741 + | hypothetical protein Avi_2075 1701764 - 1700760 - | GGDEF protein TERM 1851 1702014 - 1701956 - R 81 -10 -3.87956 | gap 3, opp_overlap 1701969, overlap 1701947 1701959 AAAATCCACAGTAAA CT-ATCGT--AGTCCACGTGCAAAGCCAA ATTG TTGCCTTTGCACGTGGATTAAACGATCAG AGGTTGAATTCCTGG TERM 1852 1702007 - 1701959 - R 75 -12 -3.00138 | gap 1, opp_overlap 1701969, overlap 1701947 1701956 ATCCACAGTAAACTA TCGTAGTCCACGTGCAAAGCCAA ATTG TTGCCTTTGCACGTGGATTA-AA CGATCAGAGGTTGAA TERM 1853 1701969 - 1701998 + r 84 -13.7 -2.52896 | opp_overlap 1701947 1701959 1701956 AACTATCGTAGTCCA CGTGCAAAGCCAA ATTG TTGCCTTTGCACG TGGATTAAACGATCA Avi_2076 1703615 - 1702011 - | fumarate hydratase protein class I TERM 1854 1703336 - 1703355 + g 70 -4.2 -4.57569 | opp_overlap 1703335 ACATCGGTAGCACAC CGCCAGCA GCGA TATTGGCG TTTTTCAACAGGTCA fumC 1705135 - 1703744 - | fumarate hydratase TERM 1855 1705409 - 1705421 + H 70 -6.3 -4.17023 | TTAAAGTTGACCCTC TGCTT TTC AAGCA TTTTAGCATGGTTAA TERM 1856 1705460 - 1705446 - H 77 -10 -3.57561 | GGTTAACTTTCCAAA GCCGAT GCA ATCGGC TAGGGAACCGGCTAA TERM 1857 1706761 - 1706783 + G 72 -5.6 -4.44667 | gap 1, overlap 1706751 GCCATGAAGGTCGTG GTC-GGTGC GCCGCA GCACCAGAC TTTCTTCTTCCAGAA Avi_2078 1705531 - 1707375 + | hypothetical protein TERM 1858 1707399 - 1707431 + T 85 -9.9 -4.24404 | opp_overlap 1707406, overlap 1707401 1707406 AAGCAAGGCATATTA GGCAAAAGGCCCG GTCGACA CGGGCCTTTTGTG TTTTGGAATTTCAGT TERM 1859 1707401 - 1707429 + T 100 -14.7 -3.71804 | opp_overlap 1707406, overlap 1707399 1707406 GCAAGGCATATTAGG CAAAAGGCCCG GTCGACA CGGGCCTTTTG TGTTTTGGAATTTCA TERM 1860 1707424 - 1707406 - T 78 -8.8 -4.22652 | opp_overlap 1707401 1707399 1707406 GCATATTAGGCAAAA GGCCCG GTCGACA CGGGCC TTTTGTGTTTTGGAA TERM 1861 1707406 - 1707424 + T 93 -8.8 -4.89567 | opp_overlap 1707406, overlap 1707401 1707399 GCATATTAGGCAAAA GGCCCG GTCGACA CGGGCC TTTTGTGTTTTGGAA gph 1708155 - 1707442 - | phosphoglycolate phosphatase bacterial TERM 1862 1707950 - 1707930 - G 74 -11.1 -3.54543 | ACGCATCCTCGGAAA TCGGCCTGC CGC GCAGGCTGA AGGCCCGCTCGATCA TERM 1863 1708233 - 1708247 + H 72 -8.6 -3.75153 | opp_overlap 1708222 AAGATTGGACGGCGT CGAAAG GGG CTTTCG TTTGGCTTGCGACCC rpiA 1708377 - 1709075 + | ribose 5-phosphate isomerase Avi_2083 1709748 - 1709161 - | hypothetical protein TERM 1864 1709870 - 1709817 - H 83 -12.7 -3.32844 | gap 2, opp_overlap 1709827 1709833, overlap 1709819 1709833 GCCTTGATCTGATAA TACCGATCA-ACGA-AAAGCCCGGA CCTGGT TCCGGGCTTTATCGTCTGGTCGGTC GGGAACGATCCGGCG TERM 1865 1709868 - 1709819 - H 100 -15.3 -3.23393 | gap 2, opp_overlap 1709827 1709833, overlap 1709817 1709833 CTTGATCTGATAATA CCGATCA-ACGA-AAAGCCCGGA CCTGGT TCCGGGCTTTATCGTCTGGTCGG TCGGGAACGATCCGG TERM 1866 1709827 - 1709859 + H 81 -12.9 -2.80816 | gap 1, opp_overlap 1709819 1709817 1709833, overlap 1709833 GATAATACCGATCAA CGA-AAAGCCCGGA CCTGGT TCCGGGCTTTATCG TCTGGTCGGTCGGGA TERM 1867 1709852 - 1709833 - H 95 -10.7 -4.45945 | opp_overlap 1709833 1709827, overlap 1709819 1709817 ACCGATCAACGAAAA GCCCGGA CCTGGT TCCGGGC TTTATCGTCTGGTCG TERM 1868 1709833 - 1709852 + H 88 -10.7 -4.03078 | opp_overlap 1709819 1709817 1709833, overlap 1709827 ACCGATCAACGAAAA GCCCGGA CCTGGT TCCGGGC TTTATCGTCTGGTCG TERM 1869 1709906 - 1709934 + H 88 -8.2 -4.72556 | overlap 1709909 CCGTTGTCGTTGTTA TGATCCATTCCC ATATA GGGGATGGATGA TTTTATGGTTTTTGG TERM 1870 1709909 - 1709931 + H 70 -9.9 -3.24725 | overlap 1709906 TTGTCGTTGTTATGA TCCATTCCC ATATA GGGGATGGA TGATTTTATGGTTTT TERM 1871 1710610 - 1710630 + G 77 -13.3 -2.94099 | ATATCTTCCATGGTC TCGGCGTCG ATA CGACGCTGA TCTATCGTGGCAAGG TERM 1872 1711045 - 1711031 - g 71 -7.8 -3.97022 | overlap 1711026 GGAATACAAAGACAA TCCGAC CTC GCCGGA TCATGATCTGATCGC gor 1710036 - 1711424 + | glutathione-disulfide reductase TERM 1873 1711474 - 1711449 - f 83 -13.3 -3.06815 | opp_overlap 1711449, overlap 1711436 1711451 ATCCCCCTTAAGATA CAGGGAGGCAG GTTA CTGCTTCCCTG TTGTCCAAAATCCTT TERM 1874 1711449 - 1711474 + F 100 -15.5 -3.30619 | opp_overlap 1711436 1711449 1711451 ATCCCCCTTAAGATA CAGGGAGGCAG GTTA CTGCTTCCCTG TTGTCCAAAATCCTT TERM 1875 1711586 - 1711601 + F 86 -6.8 -4.90778 | gap 1, overlap 1711580 CCAATCCGAGCGGCC CGCAGGC ATG GCC-GCG TTTTGTTTAGGTGAA TERM 1876 1711738 - 1711719 - f 76 -3.5 -5.00895 | gap 1, opp_overlap 1711687 CGCAGCAGAGAAAAA GCTGGCGA CCTAT CCGCC-GC TGGTCTTTGCTGGTG TERM 1877 1712739 - 1712706 - g 70 -11.7 -2.72661 | opp_overlap 1712714, overlap 1712712 CATCACGCTCAACCA CTACAAGACCCGGCC CTTT GACCGGATCCTGTCG GAAGTGGAAAGCTTC dhs 1711720 - 1712997 + | 2-dehydro-3-deoxyphosphoheptonate aldolase Avi_2088 1713662 - 1713156 - | hypothetical protein TERM 1878 1714295 - 1714278 - H 78 -5.5 -4.82901 | opp_overlap 1714278 1714277 1714280, overlap 1714280 GCGCTGTCAGAAAAA CGTTCCG GCAA CGGAATG GCTTTTCTCATGGAG TERM 1879 1714481 - 1714502 + G 75 -4.3 -4.8269 | overlap 1714482 CTATGACAGCCTGTT TGCTGCCCA TATG TGGGTGGCC TTTTTCGTGCTTCTG ccoN 1714386 - 1716035 + | cytochrome c oxidase cbb3-type subunit I ccoO 1716046 - 1716777 + | cytochrome c oxidase cbb3-type subunit II fixQ 1716752 - 1716949 + | cytochrome c oxidase FixQ chain TERM 1880 1717500 - 1717454 - g 83 -13.7 -3.57792 | gap 1 CGAGTGATCCGGAAA CCCGGGCGTCGGAAATGCCGGC CTTC GCCGACA-TCCTGAAGCCCGAG GAAATCCGCCAGGTC ccoP 1716952 - 1717815 + | cytochrome c oxidase cbb3-type subunit III TERM 1881 1717820 - 1717851 + T 93 -14.4 -3.02568 | opp_overlap 1717819 1717820 1717822, overlap 1717817 1717822 GCGGGGAGTGATAAC GAGCCGCCGGGGCT CAAT AGTTCCGGCAGCTC TCCTTTGATCTTGCA TERM 1882 1717851 - 1717820 - T 76 -12.2 -2.61264 | opp_overlap 1717820 1717817 1717822, overlap 1717819 1717822 GCGGGGAGTGATAAC GAGCCGCCGGGGCT CAAT AGTTCCGGCAGCTC TCCTTTGATCTTGCA TERM 1883 1717822 - 1717849 + T 72 -11.2 -3.0623 | opp_overlap 1717820 1717819 1717822, overlap 1717820 1717817 GGGGAGTGATAACGA GCCGCCGGGGCT CAAT AGTTCCGGCAGC TCTCCTTTGATCTTG Avi_2097 1718286 - 1717933 - | glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein TERM 1884 1718356 - 1718328 - H 76 -11.2 -3.28712 | gap 1, opp_overlap 1718326 TTTCCTGCTGCACAA TC-CCTTAAACCG GTTG CGGTTTAAGGCGA AAATTATGCGGCACT TERM 1885 1718419 - 1718441 + H 73 -12 -2.8294 | opp_overlap 1718396, overlap 1718415 ATAGGGTGCATTGAG TGCGTGACGG TTC CCGTGACGCA TAATTCTAAGACGTG TERM 1886 1718515 - 1718499 - H 76 -7.9 -4.18197 | ATTTCTTACCGAAAA GGCGCAA TCT TAGCGCC AAGCTCGTAAAAACA TERM 1887 1718541 - 1718529 - H 70 -4.1 -4.59853 | CCAAGCTCGTAAAAA CACAA TTA TTGCG CCTAGTTTGAAGAAT TERM 1888 1719585 - 1719633 + G 78 -3.8 -5.00884 | gap 1, overlap 1719586 1719590 1719606 GTCCATGGTTCCTAT TGCCGTCCATGGCACTCAGGTCA GTCC TGGTTTGAGCGCCG-GGATTGCG TTTTTTCCCGACCAT Avi_2098 1718632 - 1720569 + | GGDEF family protein TERM 1889 1720564 - 1720549 - f 87 -4.6 -5.28176 | overlap 1720550 CTGAGTGAGAAAAAA TCACGG CGCG CCGTGG CCTGAGGGAGGCCAG uvrB 1720710 - 1723715 + | excinuclease ABC B subunit TERM 1890 1723893 - 1723854 - T 100 -19.6 -4.41353 | opp_overlap 1723859 1723864 1723887, overlap 1723856 CCAGATAGATGAAAA CAGGATTCAACCGAAAAG CCCC CCTTTCGGTTGAATCCTA TAGCATCGTGTAAAA TERM 1891 1723891 - 1723856 - T 100 -20 -3.80595 | opp_overlap 1723859 1723864 1723887, overlap 1723854 AGATAGATGAAAACA GGATTCAACCGAAAAG CCCC CCTTTCGGTTGAATCC TATAGCATCGTGTAA TERM 1892 1723859 - 1723888 + T 76 -12.3 -2.63913 | opp_overlap 1723856 1723854, overlap 1723864 1723887 TAGATGAAAACAGGA TTCAACCGAAAAG CCCC CCTTTCGGTTGAA TCCTATAGCATCGTG ggt 1725626 - 1724004 - | gamma-glutamyltransferase TERM 1893 1724711 - 1724691 - G 74 -11.1 -3.57144 | GGGTTGATCGGCAAA GTCCGGATC GGC GATCCGGTC GCGGGTCAGGAAAGC TERM 1894 1725412 - 1725385 - G 72 -6.3 -4.31397 | gap 1, overlap 1725382 1725386 ATCCCCATAAAACAA GTCTGG-CGACC TTGCC GGTCGGCCAGAA TCCAGACTGAGTCGC TERM 1895 1725959 - 1725937 - g 76 -4.9 -4.74103 | gap 2, opp_overlap 1725939, overlap 1725938 1725939 GTTTCAACGGAAAAA CCGCGCATCGA TGC TCGA-G-GCGG TCTGGTCCTGCCGGG Avi_2101 1725811 - 1727010 + | hydrolase Avi_2102 1727106 - 1728326 + | aminohydrolase protein Avi_2104 1728426 - 1729106 + | hypothetical protein TERM 1896 1729935 - 1729959 + G 85 -10.6 -4.32857 | opp_overlap 1729915, overlap 1729944 CGGCATTACCGTCCC GGCCGCGCCC GGACA GGGCGTTGCC TTTCTGTTTGAGGAG Avi_2106 1729135 - 1729986 + | hypothetical protein TERM 1897 1730488 - 1730473 - g 86 -5.4 -5.09225 | opp_overlap 1730481 ATGTCATGGAAAAAA TTACCC TCTC GGGCAA TCCCAATGTGATGCT kdsA 1729983 - 1730837 + | 3-deoxy-8-phosphooctulonate synthase eno 1730924 - 1732198 + | enolase TERM 1898 1732243 - 1732268 + F 100 -15.4 -4.74103 | CCGCCCTTCTCTCAA GCCCGCGCCG CGCAAA CGGTGCGGGC TTTTTGCATTGAGGG Avi_2110 1732380 - 1732691 + | hypothetical protein pdhA 1732893 - 1733939 + | pyruvate dehydrogenase alpha subunit pdhB 1733960 - 1735345 + | pyruvate dehydrogenase beta subunit Avi_2115 1735361 - 1736695 + | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 1899 1737763 - 1737746 - g 78 -14.1 -2.53271 | overlap 1737745 1737743 CGATGCTGACAATAC CCGCGCC ATCG GGCGCGG TCTGGAGCCGGTGGT ada 1737162 - 1737800 + | methylated-DNA--protein-cysteinemethyltransferase Avi_2119 1737898 - 1738164 + | hypothetical protein lpdA 1738242 - 1739687 + | dihydrolipoamide dehydrogenase Avi_2122 1739758 - 1740006 + | hypothetical protein lipA 1740045 - 1741016 + | lipoic acid synthetase TERM 1900 1741049 - 1741072 + F 100 -13.8 -3.78775 | overlap 1741067 CTTGCCGATATTGGA GCCCGTCGCT TATA AGCGTCGGGC TTTCATGCTCAAAGG Avi_2124 1741098 - 1741673 + | hypothetical protein Avi_2125 1741676 - 1742245 + | hypothetical protein Avi_2127 1743588 - 1742263 - | ABC transporter membrane spanning protein (sugar) TERM 1901 1743349 - 1743339 - G 74 -8.2 -4.12942 | CGAAATGGCCGAAAA GGGC TGC GCCC ACCATGCGCGACAGA Avi_2128 1743832 - 1744284 + | hypothetical protein Avi_2129 1745024 - 1744269 - | hypothetical protein cinA 1745654 - 1745148 - | competence-damage associated protein TERM 1902 1745195 - 1745229 + g 83 -9.2 -4.31692 | overlap 1745196 1745198 AGGCGAGCGCGGTTC TTATGGTCGCTAGGCG GAT CGCTTCGCGCCCATGG TTTTCATAGTGCATT TERM 1903 1745688 - 1745674 - R 74 -7.8 -4.07568 | overlap 1745649 1745677 GCTTTCCCTGGAAAA CCACCG TGG CAGTGG CAATGGCTGCAATAC ispD 1746874 - 1745651 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 1904 1746519 - 1746509 - G 79 -6.8 -4.66609 | overlap 1746511 CAGCTGATCGAAAAA CGGT CGC ACCG CGTCATGGATCAGCA TERM 1905 1747028 - 1747004 - H 91 -9.3 -4.59773 | opp_overlap 1746994 TTTTATGTCTAAAAA TCGGGCAAATT AGT ATCTTGCCCGA AAGTTAGACATTTGC TERM 1906 1747736 - 1747767 + G 86 -15.8 -2.80816 | GCGATTATGCTGGGG CGCGCCTGCCAGGG GCGT CCCTGGCATGCGGG TGTGCTGGCTGGCCA nifR 1747040 - 1748038 + | nitrogen regulation protein ntrB 1748035 - 1749180 + | two component sensor kinase TERM 1907 1749558 - 1749548 - g 91 -8.2 -5.08601 | overlap 1749549 CGAGCCGAAGAAAAA GCCG GCG CGGC TGGGCGATGACATGC TERM 1908 1750449 - 1750467 + G 71 -7.3 -4.1899 | overlap 1750442 1750441 GATAACCTGCCGCCG CCCGGCC TTTAC GACCGGG TTTTGACTGAAATGG ntrC 1749177 - 1750628 + | nitrogen regulation protein NR(I) TERM 1909 1750870 - 1750842 - g 72 -6.5 -4.27617 | GAGACTGGATGAAAA CGCGGCGGCCTGC GGG GCAGACCGAAGAG GAAGCAGCACTGACA ntrY 1750835 - 1753114 + | two component sensor kinase TERM 1910 1753663 - 1753682 + G 73 -12.1 -3.15663 | opp_overlap 1753659 1753658 TGATCCACAAGCGCT CGGCCCG CGCCGC CGGGCCG TTCGTGACGCTGAAT ntrX 1753104 - 1754468 + | two component response regulator hfq 1754575 - 1754904 + | RNA chaperone Hfq hflx 1755062 - 1756396 + | GTP-binding protein HFLX Avi_2143 1757488 - 1756418 - | hypothetical protein TERM 1911 1757603 - 1757632 + r 100 -15.1 -4.08767 | GTTCTGCGACCATGT GCGCAATCGCATC CACC GATACGATTGCGC TTTTAAGGAAATCCA mazG 1758542 - 1757700 - | hypothetical protein Avi_2145 1759153 - 1758566 - | hypothetical protein TERM 1912 1759769 - 1759741 - g 76 -3.1 -5.02074 | opp_overlap 1759742 1759753, overlap 1759742 CTAGGCTGCAAAAAA TTCCGGCCAAT GCCGTCG ATCAGCCGGAT TATTGCGATTTTTAT TERM 1913 1760602 - 1760634 + G 80 -14.7 -2.72463 | overlap 1760602 TTGCCGTCTATATGG GCCGCACGGTGGCGG CTT CCGTCGCCGAACGGC TGATTGCCGGTGGAT TERM 1914 1760713 - 1760684 - g 71 -7.7 -4.07568 | TGCCGTGGTGGAAAA TGCTGGACGCGGC GACC GCCGCCTGCTGCA TGGCACGCTGCGGGA cysG 1759428 - 1760885 + | siroheme synthase Avi_2147 1760888 - 1761202 + | hypothetical protein TERM 1915 1761306 - 1761260 - f 100 -2.2 -5.85244 | overlap 1761262 AACGAAAACAAAAAA GATCTAGAGTTTGTTTGGTTCA ATC TGAACCTGACCGACTATAGAGC CTGAGGAAAGACATG TERM 1916 1761776 - 1761792 + G 72 -5.8 -4.45544 | TCCTGCGGCAATGGT CTTCGG TCCAC CCGGAG TTTTCCTTCCTGCCG cysI 1761319 - 1762992 + | sulfite reductase (NADPH) hemoprotein beta-component Avi_2149 1763004 - 1763510 + | hypothetical protein TERM 1917 1763867 - 1763878 + G 79 -7.2 -4.5852 | CCGCTTCCGGATGAC CCGG CCTG CCGG TTTTCGTTTCCGTTC mvrA 1763751 - 1764563 + | ferredoxin NADP+ reductase TERM 1918 1764740 - 1764779 + G 73 -12 -3.04792 | AAGTTGCTGTTGTTA CGGCTGGCGGAAGCGGCA TGGG TGCCGAATGCGCCAGACG TCTTGCCGCTGATGG TERM 1919 1765327 - 1765337 + G 74 -6.8 -4.4009 | opp_overlap 1765314 1765313, overlap 1765323 AGCGCGGAGATCGCC GCGA CCG TCGC TTTTCTGGCGTCCGA fabG 1764712 - 1765416 + | 3-oxoacyl-(acyl carrier protein) reductase rlpA 1765636 - 1766784 + | rare lipoprotein A TERM 1920 1766997 - 1767012 + G 81 -9 -4.36914 | GATAGAAAGATTGTT GTGCTG CTTG CAGCAC TTTTCTACGGAGCAA dacF 1766928 - 1768163 + | D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein TERM 1921 1768321 - 1768265 - f 81 -6.8 -4.68919 | gap 2, opp_overlap 1768274, overlap 1768268 1768270 1768273 AAATACAAACGAAAA CAAGAGTAGCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAG--AGCGTCG GACCGAAACGTGGGA TERM 1922 1768320 - 1768268 - f 100 -13.5 -4.40882 | opp_overlap 1768274, overlap 1768265 1768270 1768273 TACAAACGAAAACAA GAGTAGCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAGAGCGTC GGACCGAAACGTGGG TERM 1923 1768317 - 1768270 - f 100 -13.6 -3.78172 | gap 1, opp_overlap 1768274, overlap 1768268 1768265 1768273 CAAACGAAAACAAGA GTAGCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAGAG-C GTCGGACCGAAACGT TERM 1924 1768315 - 1768273 - f 100 -20.8 -2.94958 | opp_overlap 1768274, overlap 1768270 1768268 1768265 ACGAAAACAAGAGTA GCTAGAGTCTGTCTGGTTCA ATC TGAACCTGACAGACTCTAGA GCGTCGGACCGAAAC tmk 1768385 - 1769050 + | thymidylate kinase holB 1769034 - 1770074 + | DNA polymerase III delta prime subunit Avi_2157 1770852 - 1770082 - | permease TERM 1925 1770884 - 1770872 - H 74 -3.3 -4.98531 | GGGTCAAACGAAAAA CCGGT CAG AACGG CACCTCCTCGGATTC metS 1771057 - 1772634 + | methionyl-tRNA synthetase Avi_2159 1772734 - 1773420 + | hypothetical protein TERM 1926 1773904 - 1773938 + G 80 -10.1 -3.96483 | CGCAGGCGGGCGCAT TG-CGCTCATGCCGCTG GAA CAGCAGCATG-GCGACA TTATTTCACTCGGCT Avi_2160 1773428 - 1774246 + | metal dependent hydrolase TERM 1927 1774612 - 1774593 - g 86 -5.7 -5.08011 | overlap 1774594 1774597 AAAACCCGTAAAAAA CCGATGG TGGACC CCATCGA GGCCAACGCATTGCA TERM 1928 1775579 - 1775590 + G 71 -7.2 -4.13767 | GTTCGGCTATTCCTT CGCC ACCT GGCG TTTTCACCTGCGCGG clc 1774281 - 1776065 + | chloride channel protein TERM 1929 1776528 - 1776553 + G 83 -5.3 -5.02476 | overlap 1776531 TGAAGCGGTAGCGGT TGACCGGCGGG CGCG CTCGGCGGTGA TTTTTTCGGCCCTGT TERM 1930 1777098 - 1777126 + G 78 -8.3 -4.55287 | gap 1, opp_overlap 1777097 1777098, overlap 1777101 CTGGTTCCAGCAAAG CTT-TCCGATCC TGTCAC GGATCGGATAAG TTTTCTGTCCATCAC ccdA 1776379 - 1777125 + | cytochrome c-type biogenesis protein ubiH 1778358 - 1777150 - | 2-octaprenyl-6-methoxyphenol hydroxylase pcs 1778556 - 1779281 + | phosphatidylcholine synthase Avi_2166 1779451 - 1781049 + | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 1931 1781070 - 1781059 - g 71 -7.2 -4.19953 | opp_overlap 1781062 1781063 CATTGAACTGGAAAA GCGC GCCC GCGC TTCCGGGCTGTTTAC TERM 1932 1781633 - 1781644 + G 74 -7.2 -4.33928 | overlap 1781641 GAAGACTCAGGGCGT GCCC ATTG GGGC TTTGTCTTTGCCCTG Avi_2167 1781033 - 1782136 + | ABC transporter membrane spanning protein (sugar) TERM 1933 1782265 - 1782275 + G 74 -8.2 -4.11692 | overlap 1782267 ATGATGGTCATGGGC GCGG TTG CCGC TTTTGCGACTGCCTA TERM 1934 1782916 - 1782927 + G 70 -2.2 -4.84017 | overlap 1782908 GCTTTCGGCATCGGA TTGC CGTC GCAG TTTTTATCAGCACTT Avi_2168 1782133 - 1783050 + | ABC transporter membrane spanning protein (sugar) Avi_2169 1783104 - 1784177 + | lipoprotein TERM 1935 1784204 - 1784221 + F 100 -10.5 -4.86621 | GTGGAATGATTGAGA GGGCGTC TTCG GGCGCCC TTTTTCATTGCCGAT TERM 1936 1784528 - 1784549 + G 85 -11.5 -4.07568 | opp_overlap 1784527 1784523 TTCGTGCAAACCGAG CGGCTTGGC ACCG GCCATGCCG TTTTGACAGCGCGCG glmU 1784291 - 1785649 + | UDP-N-acetylglucosamine pyrophosphorylase glmS 1785821 - 1787647 + | glucosamine--fructose-6-phosphate aminotransferase Avi_2172 1787764 - 1788471 + | hypothetical protein TERM 1937 1789359 - 1789339 - g 78 -6.7 -4.59853 | overlap 1789340 1789354 TGAAGGCGGCAAAAA GCCGGACCC GAA GGACCCGGA TACCGGTCGCCAGAA Avi_2173 1788629 - 1790104 + | hypothetical protein TERM 1938 1790167 - 1790129 - T 100 -21.9 -3.1876 | opp_overlap 1790130 1790134, overlap 1790130 1790134 AAGGTTACTTACCAA TGAAACGCCGTGCATCC GAATG GGATGCACGGCGTTTCT GTTTCTGGATCATCG TERM 1939 1790166 - 1790130 - T 100 -25.4 -2.50935 | opp_overlap 1790130 1790134, overlap 1790129 1790134 AGGTTACTTACCAAT GAAACGCCGTGCATCC GAATG GGATGCACGGCGTTTC TGTTTCTGGATCATC TERM 1940 1790130 - 1790166 + T 100 -25.4 -3.55824 | opp_overlap 1790130 1790129 1790134, overlap 1790134 AGGTTACTTACCAAT GAAACGCCGTGCATCC GAATG GGATGCACGGCGTTTC TGTTTCTGGATCATC TERM 1941 1790162 - 1790134 - T 100 -20.4 -3.96298 | opp_overlap 1790130 1790134, overlap 1790130 1790129 TACTTACCAATGAAA CGCCGTGCATCC GAATG GGATGCACGGCG TTTCTGTTTCTGGAT TERM 1942 1790134 - 1790162 + T 100 -20.4 -4.40605 | opp_overlap 1790134 1790130 1790129, overlap 1790130 TACTTACCAATGAAA CGCCGTGCATCC GAATG GGATGCACGGCG TTTCTGTTTCTGGAT Avi_2174 1791175 - 1790360 - | hypothetical protein Avi_2178 1792143 - 1791277 - | ABC transporter membrane spanning protein Avi_2179 1792994 - 1792140 - | ABC transporter membrane spanning protein Avi_2180 1794034 - 1792994 - | ABC transporter nucleotide binding/ATPase protein Avi_2181 1795297 - 1794068 - | ABC transporter substrate binding protein TERM 1943 1796556 - 1796574 + G 75 -3.8 -4.86731 | overlap 1796558 TTGGTGCAGCGCTCC TGCCGC TCAAGAT GCGGTA TTTTATTTAAACCAA Avi_2182 1795436 - 1796584 + | transcriptional regulator ROK family Avi_2183 1797811 - 1796597 - | hypothetical protein TERM 1944 1796964 - 1796939 - G 76 -3.1 -4.87665 | gap 1, overlap 1796941 GGCCAGCCAGAAAAA GCCCTTGGCGCG GAT CACGCCC-GGCC AGTCGCTGTCGATAA TERM 1945 1797852 - 1797882 + r 77 -12.7 -2.82856 | opp_overlap 1797858, overlap 1797858 TACATTGATGGTTCT GAAAAAGGCGAGC AGGGC GCTCGCCTTTTTG GTTGTTGCGTCTGTC TERM 1946 1797858 - 1797876 + r 100 -11.7 -4.99435 | opp_overlap 1797858, overlap 1797852 GATGGTTCTGAAAAA GGCGAGC AGGGC GCTCGCC TTTTTGGTTGTTGCG TERM 1947 1797876 - 1797858 - R 100 -12.4 -4.57073 | opp_overlap 1797858 1797852 GATGGTTCTGAAAAA GGCGAGCA GGG CGCTCGCC TTTTTGGTTGTTGCG znuA 1798822 - 1797896 - | ABC transporter substrate binding protein (zinc) znuC 1799008 - 1799958 + | ABC transporter nucleotide binding/ATPase protein (zinc) TERM 1948 1800555 - 1800565 + G 74 -8.2 -4.18018 | overlap 1800550 TCATTCCGGCCGCCA CCGC CCG GCGG TTTTCCATGACGCCG znuB 1799948 - 1800760 + | ABC transporter membrane spanning protein (zinc) zur 1800765 - 1801166 + | transcriptional regulator Fur family TERM 1949 1801305 - 1801255 - T 95 -9 -4.84353 | opp_overlap 1801260 1801267, overlap 1801259 1801260 ACAAACGAAAACAAA TGAATCTAGAGACCGTCTGGTTCA ATA TGAACCTGACAGTCTCTAGCAAAA CGCTGCCAGTTGGCG TERM 1950 1801301 - 1801259 - T 100 -18.6 -3.82857 | opp_overlap 1801260 1801267, overlap 1801255 1801260 ACGAAAACAAATGAA TCTAGAGACCGTCTGGTTCA ATA TGAACCTGACAGTCTCTAGC AAAACGCTGCCAGTT TERM 1951 1801300 - 1801260 - T 100 -22.1 -2.88088 | opp_overlap 1801260 1801267, overlap 1801259 1801255 CGAAAACAAATGAAT CTAGAGACCGTCTGGTTCA ATA TGAACCTGACAGTCTCTAG CAAAACGCTGCCAGT Avi_2190 1801805 - 1801260 - | hypothetical protein Avi_2191 1802292 - 1801924 - | hypothetical protein TERM 1952 1802409 - 1802440 + r 77 -12.4 -2.79302 | gap 1, opp_overlap 1802429 GATTGGATTAATTCT TCGTCATGTTCGCTG AGA CAGCGGACATG-CGG TCTGCTCAAACTCGT Avi_2192 1802762 - 1802475 - | hypothetical protein dacF 1804307 - 1802853 - | D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein Avi_2196 1805312 - 1804557 - | hypothetical protein TERM 1953 1805514 - 1805481 - R 100 -10.2 -5.07107 | opp_overlap 1805485 1805508 1805513, overlap 1805482 1805483 1805485 CAAATTTCCAAAAAA GTGAGCCGGCTCCG TGGCAG CGGAACCGGCTCTT GGCCTTGGTCGGACG TERM 1954 1805513 - 1805482 - R 100 -13.7 -3.6318 | opp_overlap 1805485 1805508, overlap 1805481 1805483 1805485 AAATTTCCAAAAAAG TGAGCCGGCTCCG TGGCAG CGGAACCGGCTCT TGGCCTTGGTCGGAC TERM 1955 1805512 - 1805483 - R 100 -17.2 -2.76823 | opp_overlap 1805485 1805508, overlap 1805482 1805481 1805485 AATTTCCAAAAAAGT GAGCCGGCTCCG TGGCAG CGGAACCGGCTC TTGGCCTTGGTCGGA TERM 1956 1805510 - 1805485 - R 86 -14 -2.92111 | opp_overlap 1805485 1805508, overlap 1805483 1805482 1805481 TTTCCAAAAAAGTGA GCCGGCTCCG TGGCAG CGGAACCGGC TCTTGGCCTTGGTCG TERM 1957 1805485 - 1805510 + r 79 -12.5 -3.10464 | opp_overlap 1805485 1805483 1805482 1805481, overlap 1805508 TTTCCAAAAAAGTGA GCCGGCTCCGT GGCA GCGGAACCGGC TCTTGGCCTTGGTCG Avi_2198 1806121 - 1805600 - | hypothetical protein Avi_2200 1807445 - 1806834 - | hypothetical protein TERM 1958 1807660 - 1807610 - R 100 -11.1 -4.73092 | opp_overlap 1807613, overlap 1807615 ACAAGCGAAAACAAA GGAAACGGTAGCCTGCCTGGTTC TATCC GAACCTGACAGGCTACCGGCTAT TGGGCTTATCCTTCG TERM 1959 1807613 - 1807657 + r 79 -12.8 -3.11559 | opp_overlap 1807610 1807615 AGCGAAAACAAAGGA AACGGTAGCCTGCCTGGTTC TATCC GAACCTGACAGGCTACCGGC TATTGGGCTTATCCT TERM 1960 1807655 - 1807615 - R 100 -22 -4.32131 | opp_overlap 1807613, overlap 1807610 CGAAAACAAAGGAAA CGGTAGCCTGCCTGGTTC TATCC GAACCTGACAGGCTACCG GCTATTGGGCTTATC Avi_2201 1809591 - 1807666 - | serine protease Avi_2202 1809879 - 1810670 + | hypothetical protein Avi_2203 1810809 - 1811243 + | hypothetical protein TERM 1961 1811315 - 1811339 + T 100 -11.4 -4.52589 | CTGCGTGAATAGTGG GTCTGCCTGG TTTGT CCGGGCAGGC TTTTCTATGCGAGCG Avi_2204 1812367 - 1811417 - | hypothetical protein hisI 1813128 - 1812670 - | phosphoribosyl c-AMP cyclohydrolase TERM 1962 1813184 - 1813157 - R 93 -6.3 -5.24449 | opp_overlap 1813157 1813160 TACAAAGGCAAAAAA TAACGCACTGC GGCGAA ACGGTGCGTTA TTGTATTCCATCAAA folE 1813832 - 1813227 - | GTP cyclohydrolase I TERM 1963 1814039 - 1814023 - H 70 -6.5 -4.18401 | CGACATACGCCAAAA CGCGACA CAG TGTTGCG TAAATATGGATAATC nifU 1814105 - 1814548 + | NIFU-like protein TERM 1964 1814595 - 1814582 - g 74 -8.1 -4.12188 | CCAGCACTGCGAAAA CCTCG ACGA CGAGG AGGACGAAAGGCCGC Avi_2209 1814562 - 1814948 + | hypothetical protein thrS 1815138 - 1817138 + | threonyl-tRNA synthetase TERM 1965 1817180 - 1817152 - T 90 -13.2 -3.53343 | opp_overlap 1817156 AAGGGTTTTTCCAAA GCAAGGGGCG GGGTGTTTT CGCCCCTTGC TGATCCCGTTAATGA Avi_2213 1817725 - 1817189 - | hypothetical protein TERM 1966 1818431 - 1818466 + G 75 -4 -4.86621 | gap 1, opp_overlap 1818436, overlap 1818434 1818436 GTGGGCAGTGGCCGA TAGCAGCCGGCGC GAACATCGCCA GCGCCGGCT-CGA TTTTTCCTTCGGGCT TERM 1967 1818462 - 1818436 - g 74 -13.6 -2.62396 | opp_overlap 1818434 1818431 1818436 CAGTGGCCGATAGCA GCCGGCGCGAAC ATC GCCAGCGCCGGC TCGATTTTTCCTTCG Avi_2214 1817955 - 1818908 + | hypothetical protein nadA 1819078 - 1820049 + | quinolinate synthetase complex A subunit TERM 1968 1820699 - 1820712 + G 72 -5.9 -4.41548 | opp_overlap 1820675, overlap 1820697 CATCATGCTCGCTGC CCGCG CCGG TGCGG TTTTGTCGGATATGG nadB 1820046 - 1821596 + | L-aspartate oxidase nadC 1821598 - 1822455 + | nicotinate-nucleotide pyrophosphorylase Avi_2219 1823448 - 1822462 - | hypothetical protein TERM 1969 1823932 - 1823898 - g 73 -3.5 -4.82901 | overlap 1823925 GGCGCTGGAGAAAAA GCCCGAACTGGATGA GGAGA TGATCAAGGTCGAGC GCGCCCGCTTTACCC Avi_2220 1823671 - 1824255 + | nitroreductase family protein TERM 1970 1824392 - 1824425 + G 72 -6 -4.26903 | overlap 1824395 GCCCTATTCCTTTTT CAACGCCATTTCCG ACAAGC CGAAAATGGTGATG TTTTCCTCGGCTGGC Avi_2221 1824255 - 1824860 + | hypothetical protein Avi_2222 1825574 - 1824849 - | hypothetical protein TERM 1971 1825081 - 1825094 + g 87 -8.1 -4.72272 | GTCTCGGACTGGATG GCGGT GACG ACCGC TTTTTCATCCAAGCC Avi_2223 1825637 - 1826785 + | hypothetical protein Avi_2224 1827221 - 1826823 - | hypothetical protein TERM 1972 1827697 - 1827681 - g 70 -3.7 -4.70266 | overlap 1827670 1827673 AAGACCAGGCAAAAA CGCTT GGCCTTG AAGCG TTGCGCCTCGAGACG Avi_2225 1827359 - 1827844 + | acetyltransferase TERM 1973 1827839 - 1827821 - T 88 -8.8 -4.65895 | opp_overlap 1827821 CTTTTCATGGAAAAA CGTCTGGA AAA TCCAGTCG TTTGAATCGCTAAGC gyrB 1829984 - 1827876 - | DNA gyrase subunit B TERM 1974 1827938 - 1827921 - G 71 -7 -4.15044 | opp_overlap 1827920 CCGCTCCTGAATAAA CCGGAA TCGGGC TTCCGG CTTAGTCCCCATCAA TERM 1975 1828389 - 1828406 + g 75 -5.5 -4.58395 | overlap 1828376 GATCAGGTCGGCGAT CTGCTGG TTGG CCATCAG TTTTTCACGGCTGGC TERM 1976 1829030 - 1829040 + g 70 -4.6 -4.4267 | overlap 1829035 ATTCCATCGCGCCAT GGCC GCC GGTC TTTTCGGTTTTGCCA TERM 1977 1829256 - 1829246 - G 71 -6.8 -4.11216 | GGGCCATGCGGAAAA TCCG GCC CGGA TCGAATTTTGCGTGA Avi_2227 1830302 - 1831195 + | hypothetical protein TERM 1978 1831181 - 1831204 + T 70 -3.8 -4.64383 | overlap 1831183 CGCGCCGTGCTCAAC TGGCTGATTC GCTA GAATCTGCTG TTTTGGTTTGTCATT Avi_2229 1832432 - 1831236 - | GGDEF domain protein TERM 1979 1831860 - 1831848 - G 77 -10.5 -3.79419 | overlap 1831846 GTGTTCGAGAAAATA GGCGC CTA GCGCC AGGAAAATCGCGATC TERM 1980 1832484 - 1832504 + H 72 -9.7 -3.28924 | overlap 1832476 1832475 CCGCATACGCCGAAT CGGTGCTTT GGA GAAGCGCCG TTATCGAGAAACATC TERM 1981 1832633 - 1832655 + H 90 -7.6 -5.00616 | opp_overlap 1832633 1832632 TCTGCATGAATTAAC GGCATGCTGC ATT GCAACTTGCC TTTTTTGCCGCCACG tpiA 1832793 - 1833563 + | triosephosphate isomerase TERM 1982 1833584 - 1833620 + F 76 -8.1 -4.25859 | overlap 1833587 GTTGAAAAGGGCTTT CTTTGCGGCGGCTC-CT CGTGT AGAGAGCCGCCG-AATG TTGTTTTGACTTGGC TERM 1983 1833587 - 1833618 + F 84 -10.9 -3.72228 | gap 1, overlap 1833584 GAAAAGGGCTTTCTT TGCGGCGGCTC-CT CGTGT AGAGAGCCGCCGAA TGTTGTTTTGACTTG secG 1833661 - 1834047 + | protein-export membrane protein SECG TERM 1984 1834069 - 1834093 + F 100 -17.2 -5.4433 | TCGTTCATCTTCGCT CCGGCGGACT TAAAC AGTCCGCCGG TTTTTCTTTGTGTGT TERM 1985 1835791 - 1835773 - g 71 -13.2 -2.57683 | opp_overlap 1835772 1835768, overlap 1835772 AGAGCTTTGTAGAAG CGGCTTTG GAG CAAAGCCG GCTCGTTTGAGGTCG pyrG 1834134 - 1835801 + | CTP synthase TERM 1986 1835861 - 1835824 - f 73 -4.1 -4.74215 | gap 1, opp_overlap 1835829 1835830 1835835, overlap 1835828 1835835 AGATCATCAAGAAAA TGCAGACAAAACCCGCCC GTA AGGCGGGTTTTG-CTTTT GGATGGCGGAAAAGA TERM 1987 1835857 - 1835828 - f 86 -13.7 -2.85912 | gap 1, opp_overlap 1835829 1835830 1835835, overlap 1835824 1835835 CATCAAGAAAATGCA GACAAAACCCGCCC GTA AGGCGGGTTTTG-C TTTTGGATGGCGGAA TERM 1988 1835829 - 1835857 + F 100 -13.2 -4.18018 | opp_overlap 1835828 1835824 1835835, overlap 1835830 1835835 ATCAAGAAAATGCAG ACAAAACCCGCC CGTAA GGCGGGTTTTGC TTTTGGATGGCGGAA TERM 1989 1835830 - 1835856 + F 100 -16.7 -3.10597 | opp_overlap 1835828 1835824 1835835, overlap 1835829 1835835 TCAAGAAAATGCAGA CAAAACCCGCC CGTAA GGCGGGTTTTG CTTTTGGATGGCGGA TERM 1990 1835851 - 1835835 - f 100 -11.5 -4.59984 | opp_overlap 1835835 1835830 1835829, overlap 1835828 1835824 AAAATGCAGACAAAA CCCGCCC GTA AGGCGGG TTTTGCTTTTGGATG TERM 1991 1835835 - 1835851 + F 100 -10.8 -4.68645 | opp_overlap 1835828 1835824 1835835, overlap 1835830 1835829 AAAATGCAGACAAAA CCCGCC CGTAA GGCGGG TTTTGCTTTTGGATG TERM 1992 1836379 - 1836359 - g 86 -6.1 -4.9725 | ACCGTGACAGAAAAA CAAGCGACG GTG CGTGACTTG CTGATGGCGAGATCA Avi_2236 1835984 - 1837006 + | amide hydrolase Avi_2237 1837030 - 1837941 + | agmatinase TERM 1993 1838012 - 1837978 - T 90 -11.5 -3.9279 | opp_overlap 1837980 1837985, overlap 1837980 1837985 ATTGAACTTTACAAA CACAAAACCCCGGAG TTGCG CTTCGGGGTTTTGTT CATATTCAGATATTC TERM 1994 1838010 - 1837980 - T 95 -14.1 -3.55191 | opp_overlap 1837980 1837985, overlap 1837978 1837985 TGAACTTTACAAACA CAAAACCCCGGAG TTGCG CTTCGGGGTTTTG TTCATATTCAGATAT TERM 1995 1837980 - 1838010 + T 100 -17 -3.37513 | opp_overlap 1837980 1837978 1837985, overlap 1837985 TGAACTTTACAAACA CAAAACCCCGGAGT TGC GCTTCGGGGTTTTG TTCATATTCAGATAT TERM 1996 1838005 - 1837985 - T 93 -8.2 -4.84918 | opp_overlap 1837980 1837985, overlap 1837980 1837978 TTTACAAACACAAAA CCCCGGAG TTGCG CTTCGGGG TTTTGTTCATATTCA TERM 1997 1837985 - 1838005 + T 100 -11.1 -4.78753 | opp_overlap 1837985 1837980 1837978, overlap 1837980 TTTACAAACACAAAA CCCCGGAGT TGC GCTTCGGGG TTTTGTTCATATTCA Avi_2239 1844794 - 1838036 - | hypothetical protein TERM 1998 1839896 - 1839931 + g 73 -3.2 -4.7497 | overlap 1839894 TTCGACGGCATCGCG GCCAACCTGGGCGT ATTGCTCG ACGGTCGGCTTGGC TTTTTCCTCGATAAG TERM 1999 1843550 - 1843568 + g 78 -6 -4.67943 | CTGGCGAGCGCGATC GTTCAGTG CCG CATTGAGC TTTTCTGTGTTGGCG TERM 2000 1844321 - 1844305 - G 78 -9.3 -4.09685 | overlap 1844306 CCGGATTGGCGAAAA TGGCGGC AGC GCCGCCG CTCCAGATCTGGGAG TERM 2001 1844320 - 1844306 - G 76 -12.8 -3.05597 | overlap 1844305 CGGATTGGCGAAAAT GGCGGC AGC GCCGCC GCTCCAGATCTGGGA TERM 2002 1844560 - 1844581 + g 76 -3.5 -4.89009 | overlap 1844565 TGGCAGCTTTTGCCT GGGCCGCGG CCCG CAGCCGCTC TTTTTCATTGGCTGT TERM 2003 1844565 - 1844579 + g 75 -8.5 -4.06004 | overlap 1844560 GCTTTTGCCTGGGCC GCGGC CCGCA GCCGC TCTTTTTCATTGGCT TERM 2004 1844762 - 1844780 + g 73 -3 -4.72986 | overlap 1844764 CTGGAAAGCGCTATC GTCAATCG ACT CGCTTGTC TTTTTGGTCGCCATA Avi_2241 1845289 - 1845657 + | hypothetical protein TERM 2005 1845760 - 1845779 + F 100 -15 -3.7282 | opp_overlap 1845736, overlap 1845742 CCTGACGGCTGCGCC GGCCGCTG ATAT CAGCGGCC TTGTTCATCCGGTCA fdx 1845873 - 1846193 + | ferrodoxin Avi_2245 1846940 - 1846266 - | hypothetical protein TERM 2006 1846557 - 1846578 + g 72 -5.1 -4.58395 | overlap 1846558 1846559 CCAGATCAATCCCAG TTGCGGATT GGCC GATCCGCGG TTTTTCCAGCGTGGC TERM 2007 1846699 - 1846681 - G 71 -8 -4.07687 | ATGGTGCCGCCAAAA CGGATGCG GGT CGCGCCCG GGTGGCGGGTTCCGG TERM 2008 1846890 - 1846907 + g 81 -4.1 -5.08255 | GCGGGAGACGAGCGC GGCAC AAACCAGA GTGCC TTTTCTTTTGGCCAT folP 1847201 - 1848094 + | dihydropteroate synthase folB 1848087 - 1848455 + | dihydroneopterin aldolase TERM 2009 1848632 - 1848673 + G 76 -7 -4.43283 | opp_overlap 1848632 CGGATTTCTTCAATA GCTGCGCGCTGGTCAGCA CCACAT TGCCGCCCTCCGCGCTGC TTTCTGTTTGTCTGG folK 1848466 - 1848966 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 2010 1849011 - 1848969 - T 75 -12 -3.04248 | opp_overlap 1848969 1848970 GAAGAGGGGCTAATA CCTGGAGTCTGTCAGGCCCA CAC TGAACCAGGCAAACTCCAGA TTCTTTTGTTTTCGT TERM 2011 1848969 - 1849011 + T 75 -5.4 -4.64486 | opp_overlap 1848969, overlap 1848970 GAAGAGGGGCTAATA CCTGGAGTCTGTCAGGCCCA CAC TGAACCAGGCAAACTCCAGA TTCTTTTGTTTTCGT TERM 2012 1849144 - 1849116 - T 95 -11.8 -4.34402 | opp_overlap 1849114 1849116 TCCTTCATAGGAAAA GGTCGACAAAGC TTCCG ACTTTGCCGACC TCTTTATAGAGCCTA TERM 2013 1849798 - 1849778 - T 70 -5.5 -4.43351 | overlap 1849779 ACAGTTCAAAAACAA CCCAAAATA GCA TATTTTGGC GGTAACATTGTCCTT TERM 2014 1849863 - 1849819 - T 95 -14.9 -3.14344 | opp_overlap 1849819 1849849, overlap 1849822 CATTGTCCTTATGAA GCATCGGCCCTGCCGCCCG ACGTAAG CGGGCGGCAGGGTCGAAAA TCTATGTCCTGCCGT TERM 2015 1849819 - 1849863 + T 93 -14.9 -3.02649 | opp_overlap 1849819 1849822, overlap 1849849 CATTGTCCTTATGAA GCATCGGCCCTGCCGCCCG ACGTAAG CGGGCGGCAGGGTCGAAAA TCTATGTCCTGCCGT TERM 2016 1849860 - 1849822 - T 100 -23.2 -2.77899 | opp_overlap 1849819 1849849, overlap 1849819 TGTCCTTATGAAGCA TCGGCCCTGCCGCCCG ACGTAAG CGGGCGGCAGGGTCGA AAATCTATGTCCTGC gcvP 1852742 - 1849878 - | glycine cleavage system protein P2 TERM 2017 1851699 - 1851747 + g 75 -8.7 -4.07885 | CACCGCATACATCGA GGCCATCACCGCCAGCAGCAC TTGGGCT GTGCAGATGTTGGAGGTGGCC TTTTCGCGGCGGATA TERM 2018 1852467 - 1852493 + g 83 -5.1 -5.12987 | opp_overlap 1852467 GATGGTGCCGTAATA GCCCTGACC GATCAGCGA GGTCAGAGC TTTGTTTTTGTTTGC gcvH 1853101 - 1852739 - | glycine cleavage system component H TERM 2019 1852934 - 1852915 - G 74 -7.2 -4.32177 | gap 1, opp_overlap 1852914 1852915 CCAGCGGACAATAAA CGTCAGAGG CTG CCT-TGACG CTTTCAACCGTTGCG gcvT 1854257 - 1853118 - | glycine cleavage system T protein aminomethyltransferase TERM 2020 1853929 - 1853908 - G 79 -7.3 -4.59944 | ACCACCACAAACAAA TGATCGCCA CGAT TGGTGATCA TCAGATCATCCAGAA TERM 2021 1854196 - 1854184 - G 74 -6.9 -4.29738 | TCATAGCCAGCAAAA CCCAC CAT GCGGG CACCAAGCGACAGGT TERM 2022 1854564 - 1854576 + H 76 -9.1 -3.72576 | overlap 1854563 GCCAAATTTTTGTCG CAGCG CAG CGCTG TTTGATCCAGGGCAA Avi_2255 1854760 - 1855272 + | hypothetical protein TERM 2023 1855296 - 1855275 - T 100 -15.1 -4.18197 | opp_overlap 1855272, overlap 1855261 ACGCGGCAGGTAAAA CGCCGCGCC AATG GACGCGGCG CCAGTTCATTTCGAT TERM 2024 1855409 - 1855435 + T 90 -10 -4.38712 | overlap 1855411 TTGGCCCATCTTGTT CCCCTGGCAGGG TTC CACTGCCGGGCG TTTTCTCCCGGTCGA Avi_2257 1856097 - 1855792 - | hypothetical protein crcB 1856306 - 1856683 + | camphor resistance protein TERM 2025 1856689 - 1856703 + F 79 -4.2 -5.03314 | overlap 1856690 GCTTTTCTGATGGCC TGTCTG TTT CAGGCG TTTTTTCACAATCGC rluC 1856814 - 1857806 + | ribosomal large subunit pseudouridine synthase C Avi_2262 1857803 - 1858474 + | hydrolase TERM 2026 1858562 - 1858547 - g 73 -3.2 -4.81551 | opp_overlap 1858547 GATCCAGATGAAAAA GCCCTT GCCG AAGCGC TTCTATAAAGACGTG Avi_2263 1858467 - 1859252 + | hypothetical protein Avi_2265 1859577 - 1859272 - | hypothetical protein TERM 2027 1859858 - 1859883 + r 100 -18.3 -4.75404 | gap 1, overlap 1859867 CCCAACCTCTGGTTA CCCCGCCCAGGC TAT GCC-GGGCGGGG TTTTTCATAGCCTTT kgtP 1861250 - 1859931 - | MFS permease TERM 2028 1860249 - 1860228 - G 76 -4.4 -4.78107 | overlap 1860229 GATGATGATGAAAAA GGCTTCCA GCGCAT TGGAAGCG GTGCTCAGCGTGGTT TERM 2029 1861472 - 1861491 + H 88 -8.6 -4.58773 | GCGGTGTGGTTCCGT GCTGGAAT TGCA GTTCCAGC TTTTCCTTTAATCGG TERM 2030 1862109 - 1862150 + G 70 -2.7 -4.8622 | overlap 1862112 1862113 TTCGCAGCATTATTT GCAGGCGCGGGTCTCGCCG ATAC CGGCGAAGTCAGCCCGTTC TTTTTGGTTGCAGGG Avi_2268 1861713 - 1862339 + | hypothetical protein flgE 1862729 - 1862403 - | flagellar hook protein radC 1863686 - 1862850 - | DNA repair protein TERM 2031 1863528 - 1863546 + g 87 -8 -4.74801 | ATGTTCAGACTGCTT GGCACTGG TGT CCGGCGCC TTTTTCATCGCCTTC map 1864526 - 1863690 - | methionine aminopeptidase type I Avi_2273 1865536 - 1864652 - | transcriptional regulator LysR family TERM 2032 1865019 - 1864982 - G 71 -12.7 -2.57132 | overlap 1864964 1864981 GGGCGTGGCCAGAAT CGCCGCTGGCATATCCA CGGC TGGATCTGCCAGCGGAT GGCCACATGGGACGA Avi_2274 1865754 - 1866668 + | hypothetical protein sfsA 1867392 - 1866685 - | sugar fermentation stimulation protein phbC 1869387 - 1867417 - | poly-beta-hydroxybutyrate synthase TERM 2033 1869826 - 1869843 + G 75 -5.5 -4.57341 | overlap 1869803 1869827 TGCGGCTTATACCAC GCCGGAT GGTT ATCCGGA TTTTTCACGGCCCTT Avi_2277 1869608 - 1870030 + | hypothetical protein TERM 2034 1870099 - 1870057 - f 74 -9.9 -3.53012 | gap 1, opp_overlap 1870059 1870064 1870096, overlap 1870059 1870096 CCGCCCGTCTGTAAA TAGCCCTTGCCTTGCAGGGC ATTT GGCC-GCAAAGCAAAGGCAA TGTGACAGTTGCATT TERM 2035 1870097 - 1870059 - f 83 -12.5 -3.34398 | gap 1, opp_overlap 1870059 1870064 1870096, overlap 1870057 1870096 GCCCGTCTGTAAATA GCCCTTGCCTTGCAGGGC ATTT GGCC-GCAAAGCAAAGGC AATGTGACAGTTGCA TERM 2036 1870275 - 1870265 - f 70 -6.8 -4.13767 | overlap 1870266 TGCTGCATTGGAAAA CGGA TCG TCCG CAAGGCGGGGAGCCT Avi_2278 1870311 - 1871528 + | aminotransferase class I TERM 2037 1871511 - 1871529 + F 93 -8.9 -4.82901 | CACAATGTCGTATCG CTCAACG CTCAC CGTTGAG TTTTTATCGGAGCGG TERM 2038 1871539 - 1871561 + F 91 -12 -4.14472 | GTTGAGTTTTTATCG GAGCGGCC CATTCGT GGCCGCTC TTTTCCGAATATTGA TERM 2039 1872572 - 1872562 - g 74 -8.2 -4.13014 | CCGATATCGCCAAAA GCCG TCC CGGC GCGCAGATGGTTCCG hom 1871598 - 1872920 + | homoserine dehydrogenase recJ 1872961 - 1874763 + | single-stranded-DNA-specific exonuclease TERM 2040 1875572 - 1875557 - T 81 -6.8 -4.61231 | opp_overlap 1875557 TGACAGCCTGAAAAA CGAGCT AGTC AGCCCG TCATTTGCGTATTTT Avi_2282 1876499 - 1875573 - | OmpA family protein TERM 2041 1876445 - 1876467 + g 75 -8.4 -4.07568 | opp_overlap 1876445 TAGCACCCTTCGAAA GCCTAGGATT GGC AGTCCAAGGC TTTTGCCCGAACAGA gloA 1877101 - 1876661 - | lactoylglutathione lyase TERM 2042 1876703 - 1876718 + g 100 -11.8 -4.84017 | AAGCCAAGGCTCTGC CGGCGC TAGT GCGCCG TTTTTCTGGAGGATT cspA 1877410 - 1877988 + | cold shock protein TERM 2043 1878033 - 1878047 + G 100 -9.2 -5.80248 | opp_overlap 1878033 TGGTTTTTTCTAGAA GCGCCT TTT GGGCGC TTTTTTTCTATATTG Avi_2287 1878014 - 1878481 + | hypothetical protein Avi_2288 1878740 - 1879045 + | hypothetical protein TERM 2044 1879206 - 1879240 + T 79 -4.4 -4.90013 | opp_overlap 1879215, overlap 1879201 1879215 1879216 TCGATTGAAGCGGTT TGGAGAAATTTCCAAA CGG TTTGGAGCTTTGTTCA TTTTTCATTCGCTTC intD 1880278 - 1879238 - | phage-related integrase TERM 2045 1879429 - 1879445 + g 100 -11.5 -5.19261 | GATCGTGGAATGTCA GGCCGGT TAT GCCGGCC TTTTTTGCTGCCTTT Avi_2291 1880944 - 1880498 - | hypothetical protein TERM 2046 1880560 - 1880589 + g 74 -12.9 -2.93783 | gap 1, opp_overlap 1880578, overlap 1880557 1880570 1880587 GATGCGCCGCCAGAT TCGTC-CCGGCGTG ACA TACGCCGGCGACGG TGATTTCACAGTTTT TERM 2047 1880822 - 1880836 + g 71 -7.8 -4.08216 | CAAACTTTGCCGACA CGCGGT GCA ACCGTG TTTTGCACAGAATCC TERM 2048 1881997 - 1881957 - R 71 -11 -2.85996 | opp_overlap 1881956 1881956 1881954, overlap 1881956 CACTAGGCAGGAAAG CGCCGCAAGCGGATGACC TGTTG GGTCAATCGTCCGCGGCG GCTGTTTCCGTCAAC dnaE 1885514 - 1882221 - | DNA polymerase III alpha chain TERM 2049 1883629 - 1883648 + g 87 -7.8 -4.72201 | ACGGCTTCCAGTTCC GGCGTCGG ATAG TCGACGTC TTCTTTTTTCTCCCG TERM 2050 1884590 - 1884580 - G 86 -5.4 -5.04987 | opp_overlap 1884580, overlap 1884567 AACACCGTCAAAAAA TACG GCG CGTA TTTCATCTTATGAAT Avi_2295 1886929 - 1885511 - | hypothetical protein Avi_2296 1887695 - 1886943 - | hypothetical protein TERM 2051 1887860 - 1887838 - R 77 -6.3 -4.72272 | overlap 1887841 1887859 GTTTTTTAGCAAAAA GAAGATTCG CAAAT CGAATCATC GGACTAGATGGTGAT TERM 2052 1887857 - 1887841 - R 77 -6.6 -4.47707 | overlap 1887838 TTTTAGCAAAAAGAA GATTCG CAAAT CGAATC ATCGGACTAGATGGT Avi_2298 1889130 - 1888270 - | gas vesicle protein TERM 2053 1889141 - 1889118 - G 88 -14 -3.64703 | opp_overlap 1889107 CGCTTGCTACGGAAA CCTTTTGCAG CATT CTGCAAAAGG GGTTGGCGTACGGGG Avi_2300 1890024 - 1889611 - | hypothetical protein TERM 2054 1889687 - 1889672 - G 74 -2.5 -4.91712 | opp_overlap 1889673, overlap 1889673 GTCAAGCCAGAAAAA CGGAC CCAATC GTCCA TATTTTGCGCTGTAG Avi_2301 1891022 - 1890441 - | hypothetical protein TERM 2055 1891009 - 1890992 - G 74 -2.5 -4.9218 | overlap 1890993 1890994 CAGCCAGCAGAAAAA GCGCGGC AACA GCCGCTG AAATGCGTTGCATCT TERM 2056 1891056 - 1891029 - H 88 -12.1 -3.59979 | opp_overlap 1891031 GCGTTGCATCTGAAA TACCCCTTGCC CCCAAT GGCAAGGGATA GTTGCAACATTAGGT TERM 2057 1891136 - 1891164 + H 73 -11.7 -2.62184 | TCTGCTTTCAGCATT TTGCCTCGGGGGT CAA GCCTCCAAGGCAA TGGTCTGACCGCCAC TERM 2058 1891315 - 1891338 + H 74 -11 -3.25823 | overlap 1891299 1891297 TTCGCTGGTATGCGA GGACCGCGAA GTGT TTGGCGGTCC TTCATATGAGACAAG Avi_2303 1891841 - 1892251 + | Prophage antirepressor TERM 2059 1892587 - 1892602 + F 100 -10.4 -5.00616 | GCCGTCCTTTCGTGA TGCGCG CTCG CGCGCA TTTTTTCAAAGCCGC Avi_2306 1893402 - 1894172 + | hypothetical protein TERM 2060 1894261 - 1894299 + F 70 -4.5 -4.58395 | gap 1, opp_overlap 1894268, overlap 1894263 1894268 ACACTGAAAAAGGTA AGAAAAACCCGCTG-GCG GAAA CGCTCGGCGGGTTTTGAG TTTTTGCGAACTCGG TERM 2061 1894263 - 1894297 + F 73 -11.5 -2.60508 | gap 1, opp_overlap 1894268, overlap 1894261 1894268 ACTGAAAAAGGTAAG AAAAACCCGCTG-GCG GAAA CGCTCGGCGGGTTTTG AGTTTTTGCGAACTC TERM 2062 1894268 - 1894292 + F 100 -11.4 -4.4874 | gap 1, opp_overlap 1894268, overlap 1894263 1894261 AAAAGGTAAGAAAAA CCCGCTG-GCG GAAA CGCTCGGCGGG TTTTGAGTTTTTGCG TERM 2063 1894292 - 1894268 - f 100 -9.2 -5.17507 | gap 1, opp_overlap 1894263 1894261 1894268 AAAAGGTAAGAAAAA CCCGCTG-GCG GAAA CGCTCGGCGGG TTTTGAGTTTTTGCG TERM 2064 1895353 - 1895371 + G 72 -5.2 -4.46112 | opp_overlap 1895351 1895353, overlap 1895349 GTGTCATACATGAGA TCGGGTAT CTG ATCCCCGG TTTCTTTGAATAAAA Avi_2308 1894755 - 1895384 + | hypothetical protein TERM 2065 1895439 - 1895394 - f 70 -6.9 -4.13123 | opp_overlap 1895408, overlap 1895395 1895408 GAATAAAAACAAAGA CTTGAAGGTGAAAACGTTGCA TTTT TGCATCGATTTCAACCCCAAA AGCCGGGTGTGGCAA TERM 2066 1895470 - 1895441 - f 70 -6.3 -4.19506 | ATTTCAACCCCAAAA GCCGGGTGTGGCA ACCC TGCCACATCCCCC CCCCCGGTCTAGGGA Avi_2309 1895629 - 1896231 + | hypothetical protein Avi_2311 1896228 - 1898243 + | Phage terminase large subunit (gp15) TERM 2067 1899856 - 1899843 - g 71 -8.1 -3.95584 | CCGGCAGCAATGAAA CTGGC GCGA GCCAG GAACAGACGGCAGGT Avi_2312 1898240 - 1899877 + | Bacteriophage capsid protein TERM 2068 1899926 - 1899943 + F 76 -7.7 -4.20783 | gap 1 ATCAGGACGATCCTT GCGCGCTG TTT CAG-GCGC TTTATTCGGTGAAAT TERM 2069 1900130 - 1900098 - f 95 -12.7 -4.25104 | gap 1, overlap 1900100 CGCCTGCCACGAAAA GACCACCGGACGGC GGCTTA GCCG-CCGGTGGAC CCTCAAGTATTAGAG TERM 2070 1900128 - 1900100 - f 100 -13.9 -3.73042 | gap 1, overlap 1900098 CCTGCCACGAAAAGA CCACCGGACGGC GGCTTA GCCG-CCGGTGG ACCCTCAAGTATTAG Avi_2314 1900153 - 1901073 + | Periplasmic serine proteases (ClpP class) Avi_2316 1901078 - 1901671 + | lytic murein transglycosylase Avi_2317 1901675 - 1902037 + | hypothetical protein TERM 2071 1902061 - 1902047 - f 70 -10 -3.21684 | opp_overlap 1902045, overlap 1902045 CGATAAGGAGCAATA CCATGG CAT CCATGG ACATTTTCAGGGACG Avi_2319 1902049 - 1903065 + | hypothetical protein TERM 2072 1903078 - 1903112 + F 100 -11.5 -4.46112 | gap 1, opp_overlap 1903087, overlap 1903081 1903082 1903087 TAATCTTCCATCCGA GATC-GGAAAGGCGGG GTGA CCCGCCTTTTCAGTTC TTTGTTTGCCTGGAA TERM 2073 1903081 - 1903108 + F 77 -12 -3.19486 | opp_overlap 1903087, overlap 1903078 1903082 1903087 TCTTCCATCCGAGAT CGGAAAGGCGGG GTGA CCCGCCTTTTCA GTTCTTTGTTTGCCT TERM 2074 1903082 - 1903107 + F 93 -15.5 -2.50607 | opp_overlap 1903087, overlap 1903081 1903078 1903087 CTTCCATCCGAGATC GGAAAGGCGGG GTGA CCCGCCTTTTC AGTTCTTTGTTTGCC TERM 2075 1903087 - 1903102 + F 95 -11.8 -4.40311 | opp_overlap 1903087, overlap 1903082 1903081 1903078 ATCCGAGATCGGAAA GGCGGG GTGA CCCGCC TTTTCAGTTCTTTGT TERM 2076 1903102 - 1903087 - f 85 -11.8 -3.63805 | opp_overlap 1903087 1903082 1903081 1903078 ATCCGAGATCGGAAA GGCGGG GTGA CCCGCC TTTTCAGTTCTTTGT Avi_2321 1903143 - 1903622 + | membrane spanning protein Avi_2322 1903626 - 1903997 + | hypothetical protein Avi_2324 1904782 - 1905324 + | hypothetical protein Avi_2326 1905321 - 1905716 + | baseplate protein Avi_2327 1905720 - 1906577 + | Phage-related baseplate assembly protein TERM 2077 1907304 - 1907326 + G 75 -8.5 -3.98009 | gap 1, opp_overlap 1907292 1907299 1907300, overlap 1907291 1907288 CAACCATGAAGGCAT GGCTG-CTGT TGCA ACAGACAGCC TTTCTCGCATTTTAT Avi_2328 1906574 - 1907707 + | Phage protein gp27 TERM 2078 1908166 - 1908152 - g 74 -11.4 -3.63515 | GGTTATGGCGAAGAA GGTGCG GTG CGCACC AATATGGCGATCACC Avi_2330 1907720 - 1910929 + | Virulence-associated protein TERM 2079 1911011 - 1910995 - g 74 -7.3 -4.323 | GCCAAACATCGAAAA CACCATG GCG CATGATG TTGCCAGGCTGATCA Avi_2331 1910939 - 1912096 + | bacteriophage tail fiber protein TERM 2080 1912341 - 1912357 + F 100 -10.8 -5.61596 | overlap 1912354 GACCCATCCGTTCCA GCCGCC TTTCT GGCGGC TTTTTTTATGGCCGT Avi_2334 1912417 - 1913679 + | phage tail sheath protein Avi_2335 1913706 - 1914239 + | phage major tail tube protein Avi_2336 1914236 - 1914706 + | hypothetical protein TERM 2081 1916404 - 1916389 - g 72 -6.1 -4.36914 | TGCTGTCTGACAAAA TCGCC GAGGGT GGCGA CAAGGCTGCTACGGC Avi_2337 1914789 - 1916588 + | Phage tail tape measure protein TERM 2082 1916661 - 1916683 + F 76 -4 -4.90266 | opp_overlap 1916661 1916664, overlap 1916663 GCGGTTAATGCATAA GATCGGGTAT TTG ATCCCCGGCC TTTTTGATTGATCGA TERM 2083 1916915 - 1916934 + F 86 -13.6 -2.87564 | overlap 1916897 1916871 1916894 TGCGATTATTTCTCG CCGCCTCA TCTT TGAGGCGG TCTCTCAAGCCATCG TERM 2084 1917014 - 1917004 - f 77 -6.8 -4.56607 | overlap 1917006 CGATCAACCATAAAA GGCT ATG AGCC ATAAAATATCGCTTG TERM 2085 1917272 - 1917239 - f 70 -3.9 -4.70319 | CGACGAAAATGAAAA GAGCGGGAAAA AGGCCTCGTAAA CCTTCCCGCTC TTTCTGATACGTAAA Avi_2340 1917311 - 1917619 + | hypothetical protein Avi_2342 1917885 - 1918676 + | Prophage antirepressor protein Avi_2343 1918767 - 1919702 + | hypothetical protein TERM 2086 1919726 - 1919754 + F 95 -15.9 -2.89797 | opp_overlap 1919724 1919723, overlap 1919723 1919721 AAAAACCTGAAATTT GCACCCTGCCGGG TCT CTCGGCGGGGCGC TCGTGTTTGTGGCCA TERM 2087 1920025 - 1920009 - g 78 -6.5 -4.57341 | overlap 1919997 1920013 AACCCTGCTGAAAAA CCAGGTG CCG CAACTGG TGCTGCGCGGCGATG TERM 2088 1920162 - 1920147 - g 79 -6.8 -4.63184 | AATCGAGCTGAAAAA GTCCGA TGCA CCGGAC GGCGAAAGTTACTTC Avi_2344 1919785 - 1920204 + | phage tail assembly protein TERM 2089 1920545 - 1920487 - g 70 -2.3 -4.72272 | gap 2, opp_overlap 1920464, overlap 1920489 1920524 1920537 GGTGGTGACGAAAAA CTTCCTGCCCGTCTTGCTGTCCGCCTCGA TCA CCAAGGGCGTCGACAAGACGG-C-GGATG CGGCGCAGTTCGACC TERM 2090 1920994 - 1921009 + G 71 -10.4 -3.59979 | overlap 1920976 1920956 1920988 CAAGGGTGTGACCGG GGCCGA TCTT TCGGCC TTTACCGTCACGCGG Avi_2347 1920434 - 1921447 + | hypothetical protein TERM 2091 1921481 - 1921469 - f 74 -7.7 -4.08823 | ACGAACATAAGGAAA CGATC ATG GATCG CGAAGAACTCTTCGT TERM 2092 1921803 - 1921822 + G 71 -7.8 -4.011 | overlap 1921808 1921810 GATTGCTGGTATCGT CGCCATTG CGAC CGGTGGCG TTGTTTCCGTCTTCG Avi_2350 1921744 - 1922322 + | phage related lysozyme protein Avi_2351 1922665 - 1923069 + | hypothetical protein Avi_2353 1923308 - 1923904 + | hypothetical protein Avi_2354 1923960 - 1924298 + | hypothetical protein Avi_2356 1924481 - 1926400 + | variable tail fibre protein Avi_2357 1927704 - 1927306 - | hypothetical protein TERM 2093 1928336 - 1928359 + r 100 -16.8 -5.24129 | opp_overlap 1928336 GAAACTTAGACAAAA GGCCGGAAGA GTGA TCTTCCGGCC TTTTTTATAGCGCAG TERM 2094 1928359 - 1928336 - R 100 -16.8 -4.59081 | opp_overlap 1928336 GAAACTTAGACAAAA GGCCGGAAGA GTGA TCTTCCGGCC TTTTTTATAGCGCAG Avi_2360 1929855 - 1928626 - | hypothetical protein TERM 2095 1930215 - 1930225 + r 81 -6.8 -4.66002 | AGTGACGAGAGTTTG GAGC TTT GCTC TTGTTTTTATTGGTC TERM 2096 1930405 - 1930433 + r 100 -11.7 -5.21709 | TTCAGTTTCGTTGCC GCCGCCTGTGAGA GTT TCTTACGGTCGGC TTTTTTAGTATAAAG Avi_2361 1930857 - 1930618 - | hypothetical protein TERM 2097 1930790 - 1930813 + g 72 -5.2 -4.42748 | gap 1, opp_overlap 1930803, overlap 1930791 GACGCTTGGCGCATA TCGC-CCGGCA CAA TACCGGCGCGG TTCTTTTTGAACTGC Avi_2362 1931309 - 1931091 - | hypothetical protein TERM 2098 1931133 - 1931153 + g 72 -9 -3.9226 | gap 1 GTTCTTGACCTGTGA GCCG-AGCG TGGG CGCTACGGC TTTATCAACTGTCTT recG 1933707 - 1931335 - | ATP-dependent DNA helicase RecG TERM 2099 1933871 - 1933861 - H 72 -5.4 -4.46212 | overlap 1933862 CGGTCTACGAGAAAA TTCG ATG CGAA GCCAAGAGGTTCAGC Avi_2364 1933908 - 1934255 + | hypothetical protein TERM 2100 1934554 - 1934576 + G 71 -7.6 -4.03888 | GGGGCTGATTGCCCA TGCCCGAAAG CCA CATCCGGGCA TTGTTCTTGTCACTG TERM 2101 1935699 - 1935747 + G 76 -4.4 -4.87133 | gap 1 GCGAGCAGGATATCC TCGGC-GACCGCATGGTGCGC CGGTCCAA GCGTCGCAAGCGGGCAGCCGA TTTTATTTCGGAAGT TERM 2102 1936268 - 1936242 - g 77 -13.6 -3.01712 | opp_overlap 1936246 TCGGCTTCGGCAAGA CGGAGGTGGCGC TGC GCGCCGCCTTCG TGGCAGCGATGAACG TERM 2103 1936246 - 1936264 + G 79 -13.8 -3.14344 | opp_overlap 1936242 CTTCGGCAAGACGGA GGTGGCGC TGC GCGCCGCC TTCGTGGCAGCGATG mfd 1934252 - 1937779 + | transcription-repair coupling factor Avi_2367 1937845 - 1938822 + | hypothetical protein Avi_2368 1939802 - 1938867 - | hypothetical protein Avi_2369 1940566 - 1939895 - | polyketide biosynthesis associated protein TERM 2104 1940612 - 1940632 + r 85 -14 -2.80398 | overlap 1940609 TGACACGCCGCAGAT CCGTGCGC AGTCA GCGCACGG TGGTTGAATTCATTG Avi_2370 1942489 - 1940642 - | ABC transporter substrate binding protein (peptide) TERM 2105 1942852 - 1942841 - g 71 -7.2 -4.22652 | opp_overlap 1942844 1942849 TTACAGCAGCCAAAA CCGC GCGT GCGG CACTCTCCGCTCTCG TERM 2106 1942901 - 1942943 + G 76 -12.4 -3.34013 | CTGGCGCATCTTTTG CCCAGCAGCAGCCCGCTGGC GAT GCCGGCTTGCCGCCGCAGGG TTGGTTCAAGACCTG Avi_2372 1942819 - 1943454 + | hypothetical protein TERM 2107 1943506 - 1943485 - T 100 -13.7 -5.47218 | opp_overlap 1943485 CTTCATTGAAAAAAA GCCCCGGTC GTTA AACCGGGGC TTTTTTTATAGGACA TERM 2108 1943485 - 1943506 + T 100 -13 -5.60993 | opp_overlap 1943485 CTTCATTGAAAAAAA GCCCCGGT CGTTAA ACCGGGGC TTTTTTTATAGGACA Avi_2374 1943913 - 1943536 - | hypothetical protein TERM 2109 1943633 - 1943644 + g 72 -4.4 -4.63218 | GGTTCGCCGCTTTCG TCTG TCTC CAGA TTTTGTTCGGAGACG TERM 2110 1944038 - 1944018 - R 100 -14 -5.46657 | opp_overlap 1944018 TACTGCAATAAAAAA GCCGGCAG GGTTG CTGCCGGC TTTGGTTTCGATCTG TERM 2111 1944018 - 1944038 + r 100 -14 -4.09556 | opp_overlap 1944018 TACTGCAATAAAAAA GCCGGCAG GGTTG CTGCCGGC TTTGGTTTCGATCTG glnA 1945464 - 1944055 - | glutamine synthetase glnB 1945864 - 1945526 - | nitrogen regulatory protein PII TERM 2112 1945639 - 1945658 + g 77 -7.8 -4.26903 | CGGCATTGCGGATCG CGTCGATG ACTG CCTCGACG TTTTCATCGGCTAGC TERM 2113 1945844 - 1945856 + g 87 -7.7 -4.72272 | CTTGAAAGGCTTTAT GATCG CTT CGATC TTTTTCATGAGAAAA TERM 2114 1946192 - 1946214 + H 76 -7.8 -4.2717 | TTCGGCTTTCGATTT GATATTTGCA TGA TGCAAACATC TTTTCATCACCTGAT TERM 2115 1947021 - 1947047 + G 77 -10.1 -3.8211 | overlap 1947022 CCGGGGCCGGGCTGG TGACACTGGCC TCACC GGCCAGTGCCG TTCTTGTCAATGCCG Avi_2378 1946201 - 1947682 + | hypothetical protein Avi_2379 1948218 - 1947679 - | acetyltransferase Avi_2380 1949029 - 1948226 - | hypothetical protein TERM 2116 1948312 - 1948298 - G 73 -3.5 -4.72272 | GCCCGTGATGAAAAA CGCAA AGACA TCGCG TGGTTTTTTATCCAC uvrA 1951972 - 1949051 - | excinuclease ABC A subunit TERM 2117 1951670 - 1951700 + g 74 -7.4 -4.2828 | TTCGGTGACAGTGCC GACCGTCGAGCGCG GAT TGCGCGAGGTGGTC TTTTGCTCGATGGAG ssb 1952252 - 1952782 + | single-strand DNA binding protein TERM 2118 1953124 - 1953143 + T 79 -12.2 -3.06183 | overlap 1953118 GTTTCGGTTTTGCAA TGGCGATG CCTT CATCGCCA TTGCATGGGCATCAA Avi_2385 1953784 - 1953155 - | hypothetical protein TERM 2119 1953492 - 1953502 + g 72 -4.6 -4.58663 | GAGGTCTTTTCCTTA CGCT CCT GGCG TTTTTCGAAGATCAT gyrA 1954063 - 1956855 + | DNA gyrase A subunit TERM 2120 1956871 - 1956926 + T 71 -9.4 -3.51934 | gap 3, opp_overlap 1956878 1956879, overlap 1956870 1956878 1956878 1956881 GGGATCTCCTTTAGG TTA--AAAAC-CAGAAGGCCATGGCGT TATCC GCGCCATGGCCTTCTGCGTTCTGATAA TCTTTGTGCCAAAAA TERM 2121 1956916 - 1956878 - T 100 -19 -4.62069 | opp_overlap 1956878 1956878 1956871 1956870 1956881, overlap 1956879 CCTTTAGGTTAAAAA CCAGAAGGCCATGGCG TTATCCG CGCCATGGCCTTCTGC GTTCTGATAATCTTT TERM 2122 1956878 - 1956916 + T 100 -19.7 -2.68304 | opp_overlap 1956878 1956879, overlap 1956871 1956870 1956878 1956881 CCTTTAGGTTAAAAA CCAGAAGGCCATGGCGT TATCC GCGCCATGGCCTTCTGC GTTCTGATAATCTTT TERM 2123 1956878 - 1956917 + T 100 -19.5 -3.48378 | gap 1, opp_overlap 1956878 1956879, overlap 1956878 1956871 1956870 1956881 CCTTTAGGTTAAAAA C-CAGAAGGCCATGGCGT TATCC GCGCCATGGCCTTCTGCG TTCTGATAATCTTTG TERM 2124 1956915 - 1956879 - T 100 -22.5 -3.3692 | opp_overlap 1956878 1956878 1956871 1956870 1956881, overlap 1956878 CTTTAGGTTAAAAAC CAGAAGGCCATGGCG TTATCCG CGCCATGGCCTTCTG CGTTCTGATAATCTT TERM 2125 1956881 - 1956913 + T 100 -20 -2.62024 | opp_overlap 1956879 1956878, overlap 1956878 1956878 1956871 1956870 TTAGGTTAAAAACCA GAAGGCCATGGCGT TATCC GCGCCATGGCCTTC TGCGTTCTGATAATC Avi_2388 1959439 - 1956980 - | heavy-metal transporting P-type ATPase TERM 2126 1959137 - 1959157 + g 72 -4.7 -4.56597 | gap 1, opp_overlap 1959136 CGCAGCTAAACTGAC GCC-TGGC ACGGCG GCCAAGGC TTTTTCCACGCGCCG TERM 2127 1959347 - 1959359 + g 75 -9.1 -4.07568 | opp_overlap 1959337 CGATACGCCCGGCAC GGCGA CAA TCGCC TTTTCGACCCGCCGC TERM 2128 1959617 - 1959601 - H 70 -3.7 -4.62069 | GCGGGACGTGAAAAA CCTCT GATAACG AGAGG TGCCGTTATGACGAG TERM 2129 1960430 - 1960398 - g 80 -14.1 -2.8474 | overlap 1960395 CGTGACCTATAATGA TTGGCGCGGCGAGCC ACG GACCCGTCACGCCAA GAAAGTCGCCGCAGC ccoG 1959625 - 1961211 + | cytochrome c oxidase accessory protein CcoG TERM 2130 1961226 - 1961209 - g 84 -2.7 -5.36441 | gap 1, overlap 1961212 TCTGGAGAGAAAAAA TGAGTGCT GAC AGC-CCCA AAACCTTTACTTTCA fixH 1961208 - 1961702 + | nitrogen fixation protein FixH TERM 2131 1962319 - 1962347 + G 72 -4.6 -4.63952 | gap 1, overlap 1962319 1962320 1962323 CCGGCGCACCAATAT G-GATGTGCCGAT TGCC ATCGGCATCTCGC TTTCTTATTTCTCGT fixI 1961699 - 1964062 + | nitrogen fixation protein FixI ccoS 1964059 - 1964208 + | cytochrome oxidase maturation protein cbb3-type TERM 2132 1965296 - 1965284 - g 71 -6.9 -4.10453 | opp_overlap 1965283 GAAACCCGTCGAAAA GCCGC ATG ACGGC ATGGCTTTCCTAGCC gnd 1964340 - 1965776 + | phosphogluconate dehydrogenase decarboxylating TERM 2133 1965830 - 1965803 - f 72 -8.3 -3.82261 | opp_overlap 1965804, overlap 1965799 1965804 TTGCAATAAAAGCAA TGCCTCGCTGC TTCACC GCAGCGGGGCT TTTTTGAGGGCGTTG TERM 2134 1965829 - 1965804 - f 75 -11.8 -2.88634 | opp_overlap 1965804, overlap 1965803 1965799 TGCAATAAAAGCAAT GCCTCGCTGC TTCACC GCAGCGGGGC TTTTTTGAGGGCGTT TERM 2135 1965804 - 1965829 + F 100 -14 -5.01732 | opp_overlap 1965803 1965799 1965804 TGCAATAAAAGCAAT GCCTCGCTGC TTCACC GCAGCGGGGC TTTTTTGAGGGCGTT Avi_2397 1965851 - 1966702 + | metallo-beta-lactamase Avi_2398 1967787 - 1966738 - | transcriptional regulator LacI family TERM 2136 1968045 - 1968026 - H 75 -5 -4.7497 | TTTATTGAGGAAAAA CAGCCTAA AATA TCAGACTG CATTGCGATAAATCC TERM 2137 1968056 - 1968074 + H 70 -3.8 -4.72486 | opp_overlap 1968058, overlap 1968058 1968067 GACTGCATTGCGATA AATCCTGA TTT TCGGGATG TTTTTCCGATTTATG TERM 2138 1969373 - 1969350 - g 77 -2.4 -5.10154 | opp_overlap 1969356, overlap 1969353 1969356 ACGCAAAAGCAAAAA GAAGACCTGT TTTC ACAGTTCTTT GCCAACCCCGCCATG TERM 2139 1969370 - 1969353 - g 70 -4.1 -4.62313 | opp_overlap 1969356, overlap 1969350 1969356 CAAAAGCAAAAAGAA GACCTGT TTTC ACAGTTC TTTGCCAACCCCGCC Avi_2399 1968207 - 1969442 + | ABC transporter substrate binding protein (sugar) TERM 2140 1969483 - 1969503 + F 86 -14 -2.87132 | CTCCATCTGTCGTCA CCCTCGGG CTTCT CCCGAGGG TCTGTCGCCACAAAA Avi_2400 1969699 - 1970601 + | ABC transporter membrane spanning protein (sugar) Avi_2402 1970579 - 1971532 + | ABC transporter membrane spanning protein TERM 2141 1971943 - 1971995 + G 74 -13.9 -2.5185 | overlap 1971942 1971940 GCCAGCCGAGCTTTC CGGTGGCCAGCGCCAGCGCGTGGCC ATT GGCCGGGCGCTGGTGCGCGATGTCG ATGTCTTCCTGTTTG TERM 2142 1972235 - 1972257 + G 78 -8.5 -4.15044 | CTGTTCGTGGCTGGC TTCATCGGC TCGCC GTCGATGAA TTTCTTCAAGGGCGA Avi_2404 1971536 - 1972627 + | ABC transporter nucleotide binding/ATPase protein TERM 2143 1973197 - 1973222 + G 74 -8.3 -4.21275 | gap 1, opp_overlap 1973196 CCAGCATCAAGGCAG GGGCTGAGCG GCAGGCG CGC-CAGCCC TTTTACGTGCCTTAC TERM 2144 1973433 - 1973392 - g 74 -11.5 -3.58343 | gap 1, overlap 1973395 TCGAGCATGTCGAAA CCAGCCAGCTGCACCATGCC GAT GGCCGGGTGGAGCTGAC-GG TCAAGGCAACGATCT TERM 2145 1973431 - 1973395 - g 74 -12.9 -2.91873 | overlap 1973392 AGCATGTCGAAACCA GCCAGCTGCACCATGCC GAT GGCCGGGTGGAGCTGAC GGTCAAGGCAACGAT manA 1972806 - 1975253 + | beta-mannosidase precursor Avi_2406 1975317 - 1976078 + | hypothetical protein TERM 2146 1976430 - 1976390 - g 71 -7.5 -4.11216 | gap 1 TGTCTATTCGGAAAA GCCGCTGGTGCTCAGCCT GGAAGA AGG-TGAGAGCCTGCGGC GGATCGCCAAAGACA Avi_2407 1976106 - 1977239 + | hypothetical protein TERM 2147 1977353 - 1977306 - f 100 -10 -4.86385 | gap 1, opp_overlap 1977314, overlap 1977308 1977309 ATGCGTAAAAACAAA GAGCTAGAGCATCTCCGCGATTC AAC GAAACGCGGAAATGCTTTAG-TG GAATGAATTTGACAT TERM 2148 1977352 - 1977308 - f 100 -15.1 -4.04587 | opp_overlap 1977314, overlap 1977306 1977309 GCGTAAAAACAAAGA GCTAGAGCATCTCCGCGATTC AAC GAAACGCGGAAATGCTTTAGT GGAATGAATTTGACA TERM 2149 1977351 - 1977309 - f 100 -18.6 -3.01668 | opp_overlap 1977314, overlap 1977308 1977306 CGTAAAAACAAAGAG CTAGAGCATCTCCGCGATTC AAC GAAACGCGGAAATGCTTTAG TGGAATGAATTTGAC TERM 2150 1977314 - 1977346 + F 100 -14.9 -3.74872 | opp_overlap 1977309 1977308 1977306 AAACAAAGAGCTAGA GCATCTCCGCGATTC AAC GAAACGCGGAAATGC TTTAGTGGAATGAAT TERM 2151 1977522 - 1977546 + F 73 -11.3 -2.71924 | opp_overlap 1977523, overlap 1977521 CGGACCACTAGACAA AGGCGGCGGCG TAA TGCCGTCGCCC ATTTCAAGGAGCATA TERM 2152 1977545 - 1977523 - f 91 -11.9 -4.10164 | opp_overlap 1977522 1977521 GGACCACTAGACAAA GGCGGCGGC GTAAT GCCGTCGCC CATTTCAAGGAGCAT TERM 2153 1977599 - 1977587 - g 75 -9.1 -4.09739 | GCAACCGGCTGAAAA CCGCT ATG AGCGG ATGACCTATAATCGT Avi_2408 1977564 - 1978595 + | hypothetical protein TERM 2154 1978809 - 1978832 + F 100 -15.4 -4.46212 | TTGTCAGCAGTCAGT CTCTTCGCCT TTCA AGGCGAAGAG TTTTCTCGTGGAGGA Avi_2409 1978854 - 1980479 + | hypothetical protein Avi_2410 1982338 - 1980464 - | hypothetical protein TERM 2155 1981035 - 1981064 + g 78 -6.3 -4.62783 | opp_overlap 1981045, overlap 1981045 TTGGCCTTGAGGATG CGCGCCCAAAGCC GCAA GGTTTCCGGCGTG TTTTTCGACTGGCTA Avi_2411 1984083 - 1982335 - | hypothetical protein TERM 2156 1984129 - 1984119 - R 74 -8.2 -3.87815 | GGCCACTGTCATAAA GGCG TTT CGCC TCCTGGAGGGGGGCG Avi_2412 1984954 - 1984301 - | hypothetical protein Avi_2413 1985898 - 1984951 - | hypothetical protein TERM 2157 1985164 - 1985176 + g 70 -4.8 -4.53303 | CAGAATGTTCCAGGT GCAG GGAGG CTGC TTTTCTGTGAGGGTA ilvD 1986157 - 1987992 + | dihydroxy-acid dehydratase TERM 2158 1988016 - 1988055 + T 88 -8.8 -4.63932 | gap 2, overlap 1988017 1988017 1988019 TATTTGAAATGTTCC TGA-A-CGCCGTCGCAAA ATTGCC TTTGCGACGGCGCTGTCG TTTTATTCACAACTC TERM 2159 1988017 - 1988054 + T 72 -10.1 -3.37877 | gap 2, overlap 1988017 1988016 1988019 ATTTGAAATGTTCCT GA-A-CGCCGTCGCAAA ATTGCC TTTGCGACGGCGCTGTC GTTTTATTCACAACT TERM 2160 1988017 - 1988052 + T 77 -11.9 -3.25538 | overlap 1988016 1988017 1988019 ATTTGAAATGTTCCT GAACGCCGTCGCAAA ATTGCC TTTGCGACGGCGCTG TCGTTTTATTCACAA TERM 2161 1988019 - 1988050 + T 95 -14.5 -3.18634 | overlap 1988017 1988017 1988016 TTGAAATGTTCCTGA ACGCCGTCGCAAA ATTGCC TTTGCGACGGCGC TGTCGTTTTATTCAC TERM 2162 1988633 - 1988616 - T 72 -9.9 -3.29263 | opp_overlap 1988611 1988608 ATAGTGTTTGTAGAA CCTCAAC TTAA GTTGAGG TCAATAGTGTCTCTA Avi_2415 1989714 - 1988710 - | hypothetical protein TERM 2163 1989021 - 1989004 - G 73 -3.4 -4.75174 | gap 1, opp_overlap 1989005 1989007, overlap 1989007 CACGTAATTCAAAAA CAAGGCG CGCAT CGCCT-G TTTGGGAATATCCAG TERM 2164 1989019 - 1989007 - G 74 -6.2 -4.47888 | opp_overlap 1989005 1989007, overlap 1989004 GTAATTCAAAAACAA GGCG CGCAT CGCC TGTTTGGGAATATCC rhtB 1990516 - 1989884 - | RhtB family transporter purB 1992044 - 1990743 - | adenylosuccinate lyase Avi_2418 1992837 - 1992133 - | hypothetical protein rpe 1993538 - 1992861 - | ribulose-phosphate 3-epimerase TERM 2165 1993881 - 1993900 + G 71 -10 -3.55071 | gap 1, opp_overlap 1993857 1993881 1993879 CCTGATGGAGCAACA GGGCC-GCA ACG TGCTGGCCC TTTCCGCCGATGTCG Avi_2420 1993732 - 1994493 + | gluconate dehydrogenase Avi_2422 1995589 - 1994504 - | ABC transporter substrate binding protein (amino acid) Avi_2423 1995793 - 1996245 + | flavoprotein oxidoreductase Avi_2425 1996267 - 1996611 + | hypothetical protein TERM 2166 1996956 - 1996942 - f 74 -8.6 -3.9344 | opp_overlap 1996942 1996939 AACCTGAAGACTAAA GCATCA TGG TGATGC TGATTTCCGACAATG TERM 2167 1998287 - 1998258 - g 80 -4.9 -5.0133 | opp_overlap 1998258 1998273 1998277, overlap 1998259 TAGCCGGTGAAAAAA CGGCATCGGCG GTTCGTCT CGACGATGCCT CGTCGGCGCTTTTCG Avi_2427 1997177 - 1998697 + | polyphenol oxidase b precursor (catechol oxidase) oxidoreductase protein Avi_2428 1998703 - 1999548 + | hypothetical protein Avi_2429 1999944 - 1999540 - | mutT like protein rhlE 2001496 - 1999946 - | ATP-dependent RNA helicase TERM 2168 2000519 - 2000487 - G 85 -16.9 -2.53382 | opp_overlap 2000477 ACCAGCGTGAACGCA CGGCCGGAGCGACCG GCA CGGCCGGTACGGCCG ATGCGGTGGACATAG rhtB 2002285 - 2001662 - | RhtB family transporter TERM 2169 2002388 - 2002368 - R 100 -16.9 -5.26316 | opp_overlap 2002368 CTATGCCACAAAAAA CGCCGGTTG AAA CAACCGGCG TTTTTATTTGGAAAG TERM 2170 2002368 - 2002388 + r 100 -16.9 -5.27335 | opp_overlap 2002368 CTATGCCACAAAAAA CGCCGGTTG AAA CAACCGGCG TTTTTATTTGGAAAG Avi_2433 2003095 - 2002418 - | hypothetical protein TERM 2171 2003289 - 2003268 - H 77 -2.9 -5.11112 | opp_overlap 2003268 AAATTTCAAGAAAAA TGCATCTTC TAAG GCTGATGCA TGATTTTCTCCGAAA TERM 2172 2003548 - 2003538 - g 77 -8.2 -4.36914 | opp_overlap 2003541, overlap 2003539 2003540 CGCCCTGGTAGAAAA GGCG CGC CGCC AGGTGGCGGAACTTG TERM 2173 2004275 - 2004293 + G 78 -3.1 -5.03314 | opp_overlap 2004277, overlap 2004277 ACGGCGCAGGTCAGA CACGTAT CGGCA ATACGAG TTTTTTCACGCTGCC nifS 2003392 - 2004555 + | cysteine desulfurase TERM 2174 2004745 - 2004719 - g 74 -7.3 -4.30719 | gap 1, overlap 2004722 CTGCCGTACAAGAAA CGATCGATCAGG TCCG CCAGATCGA-CG TCGATCAGTACAAGT sufB 2004700 - 2006169 + | ABC transporter subunit TERM 2175 2006211 - 2006180 - f 72 -7.3 -4.21194 | GGTGATGATGGAAAA GAGGCAGCGAC AAGTAAAGCA GTCGATGCCTC TCCAAGTCGATGAGT TERM 2176 2006682 - 2006692 + G 74 -6.8 -4.28361 | overlap 2006678 CCCGGCGGAACGCGC TGCC AAG GGCA TTTTCCTGGCCTTCC sufC 2006449 - 2007204 + | ABC transporter nucleotide binding/ATPase protein sufD 2007228 - 2008502 + | transport system Avi_2439 2008495 - 2008887 + | glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein Avi_2440 2008877 - 2010127 + | aminotransferase Avi_2441 2010154 - 2010534 + | hypothetical protein TERM 2177 2010540 - 2010565 + F 74 -11.1 -3.18054 | opp_overlap 2010539 2010540, overlap 2010538 2010534 CTGGTATTAAGTAAG GGCGGCTTGCT GAAA GGCGAGCTGCC TATTACATTGTCAAC TERM 2178 2010657 - 2010636 - f 83 -5.1 -5.05782 | gap 1, overlap 2010638 ACCCACTTTAAAAAA CA-CCGGGCC TTG AACCCGGCTG TGAAAAGGAGAAAGC TERM 2179 2010654 - 2010638 - f 76 -7.9 -4.15748 | overlap 2010636 CCACTTTAAAAAACA CCGGGCC TTG AACCCGG CTGTGAAAAGGAGAA sufA 2010675 - 2011061 + | FeS assembly scaffold SufA TERM 2180 2011136 - 2011100 - f 100 -19 -4.88388 | gap 1, opp_overlap 2011104, overlap 2011104 ATAATGTCACAAAAA GAAACGCCTCGC-TTTC AGAT GAAAGGCGAGGCGTTTC TCATAGATCCGGGTA TERM 2181 2011132 - 2011104 - f 100 -14 -4.96501 | gap 1, opp_overlap 2011104, overlap 2011100 TGTCACAAAAAGAAA CGCCTCGC-TTTC AGAT GAAAGGCGAGGCG TTTCTCATAGATCCG TERM 2182 2011104 - 2011132 + F 100 -14 -3.97947 | gap 1, opp_overlap 2011100 2011104 TGTCACAAAAAGAAA CGCCTCGC-TTTC AGAT GAAAGGCGAGGCG TTTCTCATAGATCCG TERM 2183 2011271 - 2011283 + F 77 -6.3 -4.66057 | opp_overlap 2011270 2011271 GAGCACGCCGAGAAG CAAGA ACA TCTTG TTTTCCTTTGTGTCT coaD 2011967 - 2012461 + | pantetheine-phosphate adenylyltransferase ppiB 2012489 - 2013067 + | peptidyl prolyl cis-trans isomerase ppiB 2013204 - 2013677 + | peptidyl prolyl cis-trans isomerase TERM 2184 2013696 - 2013725 + F 100 -20.7 -4.24002 | CGGCTTTTCTGTCAG CCCGCTCCGGTGC TTCG GCGCCGGGGCGGG TTTTCGCGTTTCCAA TERM 2185 2013820 - 2013837 + G 78 -9.8 -4.02022 | CTGCGCCCGGCCAAT CCGCGC GATCAA GCGCGG TTTCTGATCGTTCGC TERM 2186 2014347 - 2014375 + G 70 -11.8 -2.84051 | overlap 2014346 GCCTGCCCTGTTCGA GGCGCTCGAT AAAGCCGGG ATCGAGCGCC ATTTCGTAACGCTGC queA 2013757 - 2014815 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 2014818 - 2015948 + | queuine tRNA-ribosyltransferase Avi_2452 2016249 - 2015962 - | hypothetical protein Avi_2453 2016588 - 2017343 + | hypothetical protein Avi_2454 2017444 - 2018031 + | hypothetical protein Avi_2455 2019111 - 2018179 - | hypothetical protein TERM 2187 2018594 - 2018577 - G 78 -3.3 -5.05601 | gap 1, overlap 2018578 GACCAGACAGAAAAA CCCGCGCC CTT GG-GCGGT AGACCGTGACGAAAT TERM 2188 2018815 - 2018800 - G 79 -6.8 -4.7173 | overlap 2018801 CACGATATCGAAAAA CGGCGA TCCT TCGCCA AACAATACGTGGCGA TERM 2189 2019140 - 2019168 + r 100 -20.4 -3.54307 | TCTTTCCCTTCGCCA TACCGTCGGCGC AGGTA GCGCCGACGGTA TTTACGGGAAGTCTT Avi_2456 2021477 - 2019186 - | dehydrogenase Avi_2457 2022457 - 2021474 - | oxidoreductase Avi_2459 2022930 - 2022457 - | oxidoreductase with iron-sulfur subunit TERM 2190 2022996 - 2022967 - H 72 -11.5 -2.51509 | overlap 2022966 2022964 TAAAAGAGTGAATAG GCACCATGCGTTT GCTT AAACGCATTGCGC TTGCCGTCTCGGACG TERM 2191 2023860 - 2023835 - g 95 -14.1 -3.64703 | opp_overlap 2023829 CGGCGTGGACCGAAA CCTGGAAACTG AAAA CAGCTTCCAGG ATCGATAGTATGCGT Avi_2460 2023173 - 2023868 + | transcriptional regulator TetR family Avi_2461 2024747 - 2023875 - | hypothetical protein TERM 2192 2024039 - 2024057 + g 75 -5.2 -4.59109 | overlap 2024040 GCAAGGATAGGTTGA TGCCGGAA GGT TTCTGGCC TTTTTGCAGCATCTG TERM 2193 2024971 - 2025006 + r 82 -11.8 -3.5485 | opp_overlap 2024977, overlap 2024973 2024974 2024977 CAACTCTCGATCCGC GCACAATCACGCGCCC CATC GAGCGCGTGATTGATC TTCCTATTTTCAATC TERM 2194 2024973 - 2025004 + r 89 -13 -3.33884 | opp_overlap 2024977, overlap 2024971 2024974 2024977 ACTCTCGATCCGCGC ACAATCACGCGCCC CATC GAGCGCGTGATTGA TCTTCCTATTTTCAA TERM 2195 2024974 - 2025003 + r 100 -16.5 -2.59607 | opp_overlap 2024977, overlap 2024973 2024971 2024977 CTCTCGATCCGCGCA CAATCACGCGCCC CATC GAGCGCGTGATTG ATCTTCCTATTTTCA TERM 2196 2024977 - 2025000 + r 86 -12.4 -3.42581 | opp_overlap 2024977, overlap 2024974 2024973 2024971 TCGATCCGCGCACAA TCACGCGCCC CATC GAGCGCGTGA TTGATCTTCCTATTT TERM 2197 2025000 - 2024977 - R 100 -14.6 -3.29511 | opp_overlap 2024974 2024973 2024971 2024977 TCGATCCGCGCACAA TCACGCGCCC CATC GAGCGCGTGA TTGATCTTCCTATTT cckA 2027650 - 2025032 - | two component sensor kinase TERM 2198 2027471 - 2027458 - G 77 -2.3 -5.03227 | overlap 2027459 AGACCAGAAAGAAAA TGCCA ACAA TGGCC AGGACGCCGAGCACC TERM 2199 2027605 - 2027642 + g 71 -8.3 -4.06904 | TACTCGGCCTGCGAT CCACCAGCGGGCCTACG CTTT CGTCTGTCTGCTGCTGG TTTGTCATTCGGTCC Avi_2465 2028093 - 2029565 + | hypothetical protein TERM 2200 2029986 - 2030005 + T 77 -5.8 -4.62783 | gap 1 GGGTGACTATTTGAC GTCTATTCG TCG CGA-TAGAC TTTTTCGCGTCGCTC dksA 2030428 - 2029988 - | RNA polymerase-binding protein DksA TERM 2201 2030470 - 2030483 + H 70 -6.7 -4.10085 | opp_overlap 2030470, overlap 2030477 AAAGGTCGCATTCAA GCCTT ACTC AAGGC TTTCCTTGATTTTTA TERM 2202 2030477 - 2030492 + H 90 -7.6 -4.74453 | opp_overlap 2030470, overlap 2030470 2030491 GCATTCAAGCCTTAC TCAAGG CTTT CCTTGA TTTTTAAATCTGTTA Avi_2469 2030704 - 2031204 + | hypothetical protein Avi_2470 2031344 - 2032813 + | hypothetical protein TERM 2203 2032850 - 2032860 + G 74 -8.2 -4.18018 | opp_overlap 2032835, overlap 2032847 GCCCGATGCCACGCC GGCC TGC GGCC TTTTCGCTAGAGGAA TERM 2204 2033059 - 2033094 + G 86 -16.2 -2.73721 | gap 1, overlap 2033064 CGCCGCTTCTCCTTC GGCAAGCTCGCCG-GTG CAG CATTCGGCGCGCTTGCC TCCTTCGCCATTGGT TERM 2205 2033345 - 2033378 + G 70 -12.3 -2.78384 | gap 1 ACGTCGAGGATCTGA C-CCAGCACCGGGCGG AAA CCGCCCGGGGTAGGAG TGTGCTGAAAGCCGC Avi_2471 2032810 - 2033907 + | hypothetical protein TERM 2206 2034295 - 2034311 + G 71 -7.9 -4.07885 | overlap 2034298 TCAAGCTGGGCGGGA CGTGCCG GGT CGGCGTG TTTTCCCAACCGATG Avi_2472 2034060 - 2034608 + | hypothetical protein TERM 2207 2034641 - 2034663 + T 100 -9.1 -5.38054 | GCAACAGTTTCCAGA CCCGGCATT GAAAG ATTGCCGGG TTTTTATTTATGGAA TERM 2208 2034688 - 2034704 + T 82 -7.9 -4.50193 | opp_overlap 2034688 2034687 2034683 ATGGAATAAATAGAC CTCCACC TTC GGGGGAG TTTTAGTTCCTTCAT speB 2035837 - 2034782 - | agmatinase aspB 2037044 - 2035863 - | aspartate transaminase TERM 2209 2035992 - 2035974 - G 78 -6.6 -4.62069 | overlap 2035976 CCGCGACCCGAAAAA TCCGCCGG GAA CCGCCAGA ATGCCCGCTCGCCGC sthA 2037474 - 2038898 + | soluble pyridine nucleotide transhydrogenase Avi_2477 2039708 - 2038956 - | exported protein TERM 2210 2039854 - 2039839 - R 100 -8.2 -5.9873 | opp_overlap 2039834 2039839 TCAGCATAAAAAAAA CCGCCC CGAA AGGCGG TTTTATCATTACCGA TERM 2211 2039839 - 2039854 + r 82 -7.5 -4.5442 | opp_overlap 2039839, overlap 2039834 TCAGCATAAAAAAAA CCGCC CCGAAA GGCGG TTTTATCATTACCGA tig 2041368 - 2039887 - | trigger factor TERM 2212 2041453 - 2041476 + r 74 -7.4 -4.09685 | gap 1, overlap 2041455 2041467 AGCCGGTTCTTATCG TC-TCGGCTGC GAG GCAGCCGGTGG TTTTCCACAGTGCCG TERM 2213 2041455 - 2041473 + r 79 -12.4 -3.08508 | overlap 2041453 2041467 CCGGTTCTTATCGTC TCGGCTGC GAG GCAGCCGG TGGTTTTCCACAGTG TERM 2214 2041584 - 2041534 - R 100 -17.8 -3.66803 | opp_overlap 2041546, overlap 2041535 CTGTAACACTTTAAA TTCGCTGCATAATTCCTTGAGCCA ATC CGGTTCAAGGAATTATGCAGCCAG CACGCCCTCCGCTGA TERM 2215 2041583 - 2041535 - R 100 -21.3 -2.7976 | opp_overlap 2041546, overlap 2041534 TGTAACACTTTAAAT TCGCTGCATAATTCCTTGAGCCA ATC CGGTTCAAGGAATTATGCAGCCA GCACGCCCTCCGCTG TERM 2216 2041546 - 2041572 + r 80 -11.7 -3.28712 | opp_overlap 2041535 2041534 AAATTCGCTGCATAA TTCCTTGAGCC AATCC GGTTCAAGGAA TTATGCAGCCAGCAC TERM 2217 2041733 - 2041700 - R 93 -11.7 -4.21142 | opp_overlap 2041698 2041702, overlap 2041703 2041704 ACCCTAACATACAAA CAATGGGCCGGAATG CACG CATTCCCGCCCTCTG CCTTGCTGCCTTACG TERM 2218 2041730 - 2041703 - R 85 -9.8 -4.21954 | opp_overlap 2041702 2041698, overlap 2041700 2041704 CTAACATACAAACAA TGGGCCGGAATG CACG CATTCCCGCCCT CTGCCTTGCTGCCTT TERM 2219 2041729 - 2041704 - R 83 -13.3 -3.12088 | opp_overlap 2041702 2041698, overlap 2041703 2041700 TAACATACAAACAAT GGGCCGGAATG CACG CATTCCCGCCC TCTGCCTTGCTGCCT TERM 2220 2041868 - 2041850 - R 73 -11.8 -2.65298 | opp_overlap 2041866, overlap 2041849 GCGATCCATCAGAAC GTCATGCA CTT TGCATGAC CCCGCCGGAGCGCGG Avi_2479 2042551 - 2041970 - | hypothetical protein Avi_2480 2043660 - 2042548 - | membrane protein TERM 2221 2043998 - 2044033 + H 93 -11.9 -4.18908 | opp_overlap 2043998 2044001, overlap 2044001 GTCGCCCATTTCAAA TGACGCCCGCCGG ATCTCCTCCC CCGGTGGGCGTTA TTGTTTTCAGCCTCT TERM 2222 2044001 - 2044030 + H 93 -11.4 -4.20868 | opp_overlap 2044001 2043998, overlap 2043998 GCCCATTTCAAATGA CGCCCGCCGG ATCTCCTCCC CCGGTGGGCG TTATTGTTTTCAGCC Avi_2481 2044292 - 2044441 + | hypothetical protein TERM 2223 2044475 - 2044514 + T 100 -14.5 -4.35644 | opp_overlap 2044479, overlap 2044479 GCTTGAATTTACATT TAAAGCGTCGAACATTC CCTTCA GGGTGTTCGGCGCTTTA TTGTTTTATAATGCT TERM 2224 2044479 - 2044510 + T 100 -10.9 -4.72617 | opp_overlap 2044479, overlap 2044475 GAATTTACATTTAAA GCGTCGAACATTC CCTTCA GGGTGTTCGGCGC TTTATTGTTTTATAA TERM 2225 2044589 - 2044603 + T 78 -8.5 -4.16842 | opp_overlap 2044582 CACAAGAACGACCGT GCCGC AAAAA GCGGC TTTCTTCCCCATAAG Avi_2483 2045184 - 2044645 - | hypothetical protein Avi_2484 2046493 - 2045186 - | ATPase AAA family protein TERM 2226 2045714 - 2045689 - G 72 -5.3 -4.42974 | gap 1, opp_overlap 2045703 GGCAGAGATAATAAA GCGCCGCATCCG GGT CCGA-GCCGCGC ACGGATTTATGCAGC TERM 2227 2046184 - 2046155 - G 77 -10.1 -3.92373 | gap 1, overlap 2046157 2046161 2046176 2046178 GATCTCATCGACAAA CAGCA-ATGTCTGG CGA CCAGACATGCGCCG GGCGCGGGCGCCCTC TERM 2228 2046180 - 2046157 - G 71 -10.4 -3.5511 | gap 1, overlap 2046155 2046161 2046176 2046178 TCTCATCGACAAACA GCAATGTCTGG CGA CCAGACA-TGC GCCGGGCGCGGGCGC TERM 2229 2046177 - 2046161 - G 74 -10.9 -3.50737 | overlap 2046157 2046155 2046176 ATCGACAAACAGCAA TGTCTGG CGA CCAGACA TGCGCCGGGCGCGGG htrA 2047893 - 2046490 - | serine protease TERM 2230 2048053 - 2048040 - H 70 -3.7 -4.59414 | overlap 2048041 2048042 2048044 CGACAATAATGAAAA CCGAG ACGC CACGG CCCATCAAACCGGGG TERM 2231 2048296 - 2048279 - g 79 -5.6 -4.82154 | overlap 2048293 AAGGCAGACGAAAAA GCGATT TGCGAC AATCGC GATCTGAACGATCTC Avi_2487 2048213 - 2048512 + | hypothetical protein Avi_2489 2048602 - 2049111 + | hypothetical protein TERM 2232 2049565 - 2049532 - g 73 -11.1 -3.40522 | gap 1, opp_overlap 2049552 2049555, overlap 2049536 2049540 ACTGTGCTAGCACAA CTCAGCAAGCCGGTGA TCC TCACCGGCTCAC-AAG TGCCGCTGTTTCATT TERM 2233 2049562 - 2049536 - g 81 -15.2 -2.61548 | opp_overlap 2049552 2049555, overlap 2049532 2049540 TGCTAGCACAACTCA GCAAGCCGGTGA TCC TCACCGGCTCAC AAGTGCCGCTGTTTC TERM 2234 2049558 - 2049540 - g 86 -14.6 -3.23979 | opp_overlap 2049552 2049555, overlap 2049536 2049532 AGCACAACTCAGCAA GCCGGTGA TCC TCACCGGC TCACAAGTGCCGCTG TERM 2235 2049945 - 2049921 - g 71 -7.1 -4.21773 | opp_overlap 2049921 GTCCAACATAAACAA GGCCCCG GTCATCACTCT CGGGGCC TTTCCCGCCTGGTAC TERM 2236 2050539 - 2050525 - g 81 -4.2 -5.0925 | overlap 2050526 GGTGAAAATGAAAAA GCCG CCCTGCC CGGC CGGTTGCAGATCCGC Avi_2490 2049163 - 2050764 + | hypothetical protein TERM 2237 2050808 - 2050822 + F 77 -11.4 -3.25823 | overlap 2050787 CGTCTGACGTGGCGG GCGGCT TTG AGCCGC TTGATGTAAGCGGGA Avi_2491 2050914 - 2051249 + | hypothetical protein TERM 2238 2052319 - 2052302 - g 70 -4.1 -4.56597 | opp_overlap 2052288 TTCCCGGTCCAAAAA CCTGG GATGGTGT CCAGG GTGCCGATCCGCTCA cpdB 2051413 - 2053416 + | 2prime3prime-cyclic-nucleotide 2prime-phosphodiesterase TERM 2239 2053470 - 2053436 - T 100 -25.2 -3.61356 | opp_overlap 2053443, overlap 2053443 ACGATCCAGCTGAAA CGCAAAACGCCCGGAC CAA ATCCGGGCGTTTTGCG TGAAAAATGATCCCT TERM 2240 2053443 - 2053463 + T 100 -14 -4.18197 | opp_overlap 2053436 2053443 AGCTGAAACGCAAAA CGCCCGGA CCAAA TCCGGGCG TTTTGCGTGAAAAAT TERM 2241 2053463 - 2053443 - T 100 -14.7 -4.35926 | opp_overlap 2053443, overlap 2053436 AGCTGAAACGCAAAA CGCCCGGAC CAA ATCCGGGCG TTTTGCGTGAAAAAT Avi_2493 2053819 - 2053493 - | hypothetical protein Avi_2495 2054996 - 2053959 - | glycosyl transferase family 2 ilvA 2055687 - 2056937 + | threonine dehydratase Avi_2497 2057302 - 2058375 + | possible taurine transport system protein Avi_2498 2058449 - 2059267 + | ABC transporter membrane spanning protein (aliphatic sulphonate) TERM 2242 2059951 - 2059936 - gf 76 -4.6 -4.72272 | overlap 2059938 CGGCCCGAGGAAAAA CAGCGC TACG GCGCCA CCATCACCAAGGACA Avi_2499 2059240 - 2060079 + | ABC transporter nucleotide binding/ATPase protein TERM 2243 2060223 - 2060196 - g 78 -9.8 -4.07568 | gap 1, overlap 2060162 2060197 CCTTGCCGGGCAAAA GCC-CGCTGCCCG CAC CGGACATCGAGGC GACAGACCTTATCCA Avi_2500 2060090 - 2060917 + | hypothetical protein Avi_2501 2060929 - 2061579 + | hypothetical protein TERM 2244 2064762 - 2064778 + G 79 -7.2 -4.56597 | opp_overlap 2064761 2064773 CCAGATGTGGAACAC CTGGCG GCAAA CGCCGG TTTTTACCCGCGACA TERM 2245 2064970 - 2064954 - g 71 -8 -4.08216 | GGAGCTGGCTGAAAA TGCCGA AAGCA TCGGCA CGTTCAAGCGTCAGC pccA 2061583 - 2065314 + | propionyl-coenzyme A carboxylase alpha polypeptide TERM 2246 2065336 - 2065378 + F 93 -10 -4.46212 | opp_overlap 2065338, overlap 2065337 2065338 CCGCCTCAGCGACAC AATGACCGGATATATGGAAT GAA ATTTCATTTATCCGGTCAAA TTTTCTACTAAAAAA TERM 2247 2065337 - 2065377 + F 85 -13.5 -3.27406 | opp_overlap 2065338, overlap 2065336 2065338 CGCCTCAGCGACACA ATGACCGGATATATGGAAT GAA ATTTCATTTATCCGGTCAA ATTTTCTACTAAAAA TERM 2248 2065376 - 2065338 - f 100 -14.8 -3.51924 | opp_overlap 2065338 2065337 2065336 GCCTCAGCGACACAA TGACCGGATATATGGAAT GAA ATTTCATTTATCCGGTCA AATTTTCTACTAAAA TERM 2249 2065338 - 2065376 + F 100 -17 -2.56122 | opp_overlap 2065338, overlap 2065337 2065336 GCCTCAGCGACACAA TGACCGGATATATGGAAT GAA ATTTCATTTATCCGGTCA AATTTTCTACTAAAA Avi_2503 2065518 - 2066159 + | hypothetical protein TERM 2250 2066602 - 2066618 + G 77 -10.1 -3.91897 | AGCCCTTCATCCTGA CAGCGCT GTC GGCGCTG TTTCTGGGTGACAAG Avi_2504 2066253 - 2067191 + | permease TERM 2251 2067225 - 2067206 - f 79 -3.6 -5.15381 | opp_overlap 2067206 2067209, overlap 2067209 AATACACCCAAAAAA GAGCAAAT CCAT ATTTGGTC TTTTACTATTCGAAT Avi_2505 2067393 - 2067926 + | hypothetical protein adhC 2068014 - 2069141 + | alcohol dehydrogenase class III TERM 2252 2069161 - 2069201 + G 81 -11.2 -3.9398 | gap 1 AAATATGCCTTATCG GGTTGACGTGCGGAGACTG GATG CATTCTCCGCACGA-GACC TTTATGACCTTCTGA Avi_2507 2069138 - 2069614 + | acetyltransferase protein TERM 2253 2069945 - 2069909 - g 70 -12.4 -2.78816 | gap 1, opp_overlap 2069904, overlap 2069913 2069915 GGATGTTCGATGAGA CCAATATCG-GCATGGC AACT GCCATGCGCGATCTCGG TGCCCATTTGCGCGA Avi_2508 2069620 - 2070084 + | hypothetical protein TERM 2254 2070521 - 2070550 + G 80 -10 -4.07568 | gap 1, opp_overlap 2070521 TCATCTGACAAGCAA TCCCGACC-CCGG CCCTT CCGGCGGTCTGGA TTTTCCCGACACGCC Avi_2509 2070081 - 2070752 + | hypothetical protein TERM 2255 2070808 - 2070792 - g 71 -7.9 -4.07885 | opp_overlap 2070807, overlap 2070777 2070794 TATTCTGTCGCAAAA CACCGCC TTT GGCGGCA TGCAGGGCGTGTTTT TERM 2256 2070806 - 2070794 - g 75 -10.5 -3.63744 | overlap 2070792 TTCTGTCGCAAAACA CCGCC TTT GGCGG CATGCAGGGCGTGTT fghA 2070781 - 2071602 + | S-formylglutathione hydrolase TERM 2257 2071628 - 2071655 + T 72 -10 -3.33162 | opp_overlap 2071625 2071624, overlap 2071629 CTGCTGCATAATTTT CTCCTTAAATCG ATTC CGATTTAAGGAA TTATGCAGTAGGCTA TERM 2258 2071629 - 2071654 + T 81 -13.5 -2.59683 | opp_overlap 2071625 2071624, overlap 2071628 TGCTGCATAATTTTC TCCTTAAATCG ATTC CGATTTAAGGA ATTATGCAGTAGGCT lpxB 2072850 - 2071675 - | lipid A-disaccharide synthase TERM 2259 2071719 - 2071739 + g 100 -11.1 -5.01546 | CCAGCACGATCTCCG CCCCCGC TTCACCC GCGGGGG TTTTTGTCTGCATTT Avi_2512 2073766 - 2072894 - | hypothetical protein TERM 2260 2073732 - 2073712 - G 82 -14.7 -2.98823 | CTTCGGCGACATAGA CCGGCAGCA TAC CGCTGCCGG CAATGATGGCGAGAC lpxA 2074585 - 2073770 - | acyl-(acyl carrier protein)-UDP-N-acetylglucosamine O-acyltransferase fabZ 2075046 - 2074582 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase lpxD 2076110 - 2075043 - | UDP glucosamine N-acyltransferase omp1 2078495 - 2076159 - | group 1 outer membrane protein precursor Avi_2518 2079811 - 2078690 - | zinc metallopeptidase TERM 2261 2078914 - 2078896 - G 70 -4.5 -4.51196 | overlap 2078888 2078897 TGGAAACCGACAAAA CTGCCGC CAATT GCAGCAA AGCTACAACACCAAG TERM 2262 2079471 - 2079436 - G 70 -2.6 -4.73108 | gap 1, opp_overlap 2079463 2079464 CCGAGAAAATTAAAA TTGCCAGCAGG-AAATT TGC AATTGGCCCGGCGGCAA CAGTGGCTGCCCTTT cdsA 2080765 - 2079923 - | phosphatidate cytidylyltransferase TERM 2263 2080506 - 2080492 - G 70 -4.2 -4.64495 | ATGTAAGAAAAACAA GCGTCA AAG TGAAGC CGGACAGCAAGGGTA TERM 2264 2080814 - 2080789 - R 73 -9 -3.62775 | gap 2 ACGATCCGGCAACAA CGGCGG-C-GGC TGGT GCCAGACCGCCG AATCGCCGACTGCGG uppS 2081518 - 2080772 - | undecaprenyl pyrophosphate synthase TERM 2265 2081068 - 2081088 + g 71 -12.5 -2.66316 | opp_overlap 2081047, overlap 2081065 CCTGCACATCGCGCA CCAGGGCTG AAA CTGCCCTGG TCATCTCATCGCGCG frr 2082123 - 2081563 - | ribosome recycling factor pyrH 2082933 - 2082211 - | uridylate kinase TERM 2266 2082571 - 2082543 - G 71 -6.8 -4.18018 | gap 1 TGCCGCCAGCGAAAA TCACCACCCTGCC CTGC GACAGG-TGATGA ACCGCGACGCGCTGC TERM 2267 2083039 - 2083023 - R 70 -3.6 -4.62471 | CGCAATGGTGAAAAA CGTCAC GAAGT GTGCCG CAGCGAACAAGAAGC TERM 2268 2083081 - 2083113 + r 78 -8.4 -4.17023 | gap 1, opp_overlap 2083084, overlap 2083081 2083084 CAATGCCGGATACAC G-AAGGGCACCGCGT TGTC ACGCGATGCCCTGAC TTTTCCCATGATTGG TERM 2269 2083084 - 2083109 + r 90 -14.7 -2.75577 | opp_overlap 2083084, overlap 2083081 2083081 TGCCGGATACACGAA GGGCACCGCGT TGTC ACGCGATGCCC TGACTTTTCCCATGA TERM 2270 2083109 - 2083084 - R 100 -16.9 -3.32022 | opp_overlap 2083084 2083081 2083081 TGCCGGATACACGAA GGGCACCGCGT TGTC ACGCGATGCCC TGACTTTTCCCATGA tsf 2084077 - 2083151 - | translation elongation factor Ts TERM 2271 2084353 - 2084335 - R 100 -16 -3.85698 | GCTGGCCTTTACAAA GGGCGGGT CAC ACCCGCCC TCATCCGGTCAAGGC rpsB 2085116 - 2084370 - | 30S ribosomal protein S2 TERM 2272 2085127 - 2085140 + r 79 -3.8 -5.09245 | opp_overlap 2085125 2085127, overlap 2085126 2085125 CGCATGCTAAAATCA GGCA ATGCCA TGCC TTTTTCTCCTTTTCC TERM 2273 2085206 - 2085195 - R 70 -7.2 -4.07568 | overlap 2085180 2085178 GCGTCTTTTTCAAAA CGCC ACCG GGCG GAACGGACCGGATGT TERM 2274 2085390 - 2085335 - R 78 -5.6 -4.78848 | gap 1, opp_overlap 2085359 2085364, overlap 2085345 2085349 2085351 2085353 2085364 TGTTTAAAGAGAAAA TTATGCAACACATATAGAGCCACAGCG AAC CATTGTG-CGCTATATATGGCGCACAA TGGTTCGCTGTGGGG TERM 2275 2085407 - 2085349 - R 100 -20.5 -3.11339 | gap 1, opp_overlap 2085359 2085364, overlap 2085345 2085335 2085351 2085353 2085364 ATTATGCAACACATA TAGAGCCACAGCGAACCATTGTGCGCTA TATA TGGCGCACAATGGTTCGCTGTGGGGCC- AAGAAAAAGCCTGCA TERM 2276 2085406 - 2085351 - R 100 -27.8 -3.11207 | opp_overlap 2085359 2085364, overlap 2085345 2085335 2085349 2085353 2085364 TATGCAACACATATA GAGCCACAGCGAACCATTGTGCGCTA TATA TGGCGCACAATGGTTCGCTGTGGGGC CAAGAAAAAGCCTGC TERM 2277 2085404 - 2085353 - R 100 -29 -3.10895 | opp_overlap 2085359 2085364, overlap 2085345 2085335 2085351 2085349 2085364 TGCAACACATATAGA GCCACAGCGAACCATTGTGCGCTA TATA TGGCGCACAATGGTTCGCTGTGGG GCCAAGAAAAAGCCT TERM 2278 2085364 - 2085393 + r 100 -17.3 -3.12351 | opp_overlap 2085345 2085335 2085364 2085353 2085351 2085349, overlap 2085359 TAGAGCCACAGCGAA CCATTGTGCGCTA TATA TGGCGCACAATGG TTCGCTGTGGGGCCA TERM 2279 2085393 - 2085364 - R 95 -15.1 -3.14026 | opp_overlap 2085359 2085364, overlap 2085345 2085335 2085353 2085351 2085349 TAGAGCCACAGCGAA CCATTGTGCGCTA TATA TGGCGCACAATGG TTCGCTGTGGGGCCA TERM 2280 2085447 - 2085416 - R 74 -2.3 -5.06414 | gap 2 TGGGGCCAAGAAAAA GCCTGCAATTGCTAC TTTT GC-GCC-TTGCAGGC CGTCGGTGGCAGCAA Avi_2529 2086245 - 2085427 - | hypothetical protein Avi_2531 2086370 - 2086840 + | hypothetical protein Avi_2532 2086837 - 2087562 + | glycerophosphoryl diester phosphodiesterase Avi_2533 2087580 - 2088788 + | hypothetical protein Avi_2534 2088844 - 2089269 + | HIT family protein TERM 2281 2089263 - 2089307 + T 100 -5.8 -5.69262 | opp_overlap 2089254, overlap 2089264 AAAGATTATCGCAGC GCTATAGCATCGTGCAGA ACACTGGAG TCAGCAGGATGCTATAGG TTTTTGTTTTTATGC TERM 2282 2089264 - 2089306 + T 78 -9.3 -3.99117 | opp_overlap 2089254, overlap 2089263 AAGATTATCGCAGCG CTATAGCATCGTGCAGA ACACTGGAG TCAGCAGGATGCTATAG GTTTTTGTTTTTATG Avi_2535 2089698 - 2089366 - | hypothetical protein Avi_2536 2090417 - 2089695 - | branched-chain amino acid permease TERM 2283 2089974 - 2089944 - G 86 -4.5 -5.24129 | overlap 2089951 CGGCGTGAGAAAAAA CAGCAAACCGGCG ACAAG CGGCGGCAGGCTG GAGACAAGGCCATAG TERM 2284 2090538 - 2090566 + r 100 -17.5 -2.63112 | opp_overlap 2090542, overlap 2090542 GCGCTTCCGCTCATG ACAATGCCGGGCA AAC TGCCCGGCATTGA TGCTGTCAAAAATTT TERM 2285 2090562 - 2090542 - R 100 -16.9 -3.40403 | opp_overlap 2090542 2090538 TTCCGCTCATGACAA TGCCGGGCA AAC TGCCCGGCA TTGATGCTGTCAAAA TERM 2286 2090542 - 2090562 + r 100 -16.9 -3.24747 | opp_overlap 2090542, overlap 2090538 TTCCGCTCATGACAA TGCCGGGCA AAC TGCCCGGCA TTGATGCTGTCAAAA clpA 2093093 - 2090601 - | ATP-dependent Clp protease ATP-binding subunit TERM 2287 2092493 - 2092506 + g 72 -5.9 -4.43309 | overlap 2092470 TCAGCGGATCGATCC GGCCG GTCT TGGCC TTTTCATTGAGGTTG Avi_2538 2093451 - 2093098 - | hypothetical protein TERM 2288 2093499 - 2093487 - R 70 -6.9 -4.13767 | CGCTTCATCGCAAAA GGCGA ATC CCGCC AGACCTCACAGATTC TERM 2289 2093830 - 2093809 - R 100 -17.3 -4.90869 | AGTACCAACGAAAAA CGGCCGTCC CACA GGACGGCCG CTTGCAGCGACATCA TERM 2290 2093870 - 2093883 + r 71 -9.5 -3.55622 | opp_overlap 2093858 GATCAGGCAGCCGTG GCGGC GGAC GCCGC TTTCGAAGCCTTGGC Avi_2539 2094210 - 2093857 - | hypothetical protein TERM 2291 2094351 - 2094328 - R 100 -11.6 -5.66229 | opp_overlap 2094328 ATCAATAACAAAAAA GGGCGACCCC ATAC GCGGCCGCCC TTCATTATCAAATAT TERM 2292 2094328 - 2094351 + r 71 -9.4 -3.45386 | opp_overlap 2094328 ATCAATAACAAAAAA GGGCGACCCC ATAC GCGGCCGCCC TTCATTATCAAATAT TERM 2293 2094392 - 2094374 - R 70 -5.3 -4.36433 | TCAAATATCAATAAA TGCATCC CTTAT GAATGCA ACCTGCGATCAAAGA Avi_2541 2094736 - 2094401 - | hypothetical protein cysE 2095776 - 2094952 - | serine acetyltransferase fad 2095849 - 2096652 + | enoyl-CoA hydratase Avi_2545 2097444 - 2096659 - | hydrolase TERM 2294 2097186 - 2097170 - G 72 -9.3 -3.77464 | opp_overlap 2097169 2097166 AGATGATCGAGCAAA GCTGCGG CAT CCGCTGC CATGTTTTCAGGGTG Avi_2547 2097847 - 2098092 + | hypothetical protein TERM 2295 2098344 - 2098319 - f 70 -6.7 -4.07568 | opp_overlap 2098330 CGGTGTTCTCGAAAA CCTGCGCACGC GCTG GCATGAGCCGG ATGTGGTGGCGCTCG TERM 2296 2098438 - 2098468 + F 72 -9.7 -3.38991 | overlap 2098429 2098437 GGCAGGCGCCTTACG GCGTGTTGCATCG CGCAA CGCTGCAACAGGC TCTTCTTGAGGCCGT TERM 2297 2099275 - 2099316 + G 100 -18.9 -3.33969 | overlap 2099279 GCGATCTCGACTGGC TCTATGGCTACCGGCCTGT CTTG ACAGACCGGTAGCCATAAA TTGTCCGATGCCTTC TERM 2298 2099279 - 2099312 + G 95 -19.7 -2.60079 | overlap 2099275 TCTCGACTGGCTCTA TGGCTACCGGCCTGT CTTG ACAGACCGGTAGCCA TAAATTGTCCGATGC nah 2098644 - 2099309 + | salicylate hydroxylase metC 2100550 - 2099360 - | cystathionine beta lyase TERM 2299 2099583 - 2099565 - G 70 -4.4 -4.43501 | overlap 2099566 2099569 AAGGCATCGAGAAAA GCATGCGC CTT GCGCTTGA ACTGCGCCGGATCGC Avi_2551 2100990 - 2102015 + | ABC transporter substrate binding protein (amino acid) TERM 2300 2102624 - 2102647 + GF 100 -13.2 -3.75937 | gap 1 CGCCATTCTGCCGCA GGC-GCGCGAT TCC ATCGCGCTGCC TTTCGATATCTATCT Avi_2552 2102148 - 2103344 + | ABC transporter membrane spanning protein (amino acid) TERM 2301 2104259 - 2104223 - gf 75 -6.6 -4.38712 | opp_overlap 2104224, overlap 2104224 GCTACTGGCAGAAAA TCCGGCT-GATCGTCCTG CCG CAGG-CGATCAAGCTGGT CATTCCGGGTATCGT TERM 2302 2104224 - 2104258 + GF 77 -12.3 -2.72991 | opp_overlap 2104223 2104224 CTACTGGCAGAAAAT CCGGCT-GATCGTCCTG CCG CAGG-CGATCAAGCTGG TCATTCCGGGTATCG TERM 2303 2104258 - 2104224 - gf 70 -10.1 -3.22906 | opp_overlap 2104224, overlap 2104223 CTACTGGCAGAAAAT CCGGCT-GATCGTCCTG CCG CAGG-CGATCAAGCTGG TCATTCCGGGTATCG Avi_2553 2103316 - 2104503 + | ABC transporter membrane spanning protein (amino acid) Avi_2554 2104615 - 2105385 + | ABC transporter nucleotide binding/ATPase protein (amino acid) TERM 2304 2105487 - 2105445 - T 100 -23 -3.80697 | overlap 2105436 2105446 2105449 ACGAAACTAAGAGAA GCAAGAGTCTGTCTGGTTCA ATC TGAACCAGACAGACTCTCGG ATCTGACCAGTCTCG TERM 2305 2105486 - 2105446 - T 100 -26.5 -2.87334 | overlap 2105445 2105436 2105449 CGAAACTAAGAGAAG CAAGAGTCTGTCTGGTTCA ATC TGAACCAGACAGACTCTCG GATCTGACCAGTCTC TERM 2306 2105483 - 2105449 - T 100 -24.6 -3.56056 | overlap 2105446 2105445 2105436 AACTAAGAGAAGCAA GAGTCTGTCTGGTTCA ATC TGAACCAGACAGACTC TCGGATCTGACCAGT TERM 2307 2105519 - 2105548 + T 93 -14.5 -3.10344 | opp_overlap 2105519 CCGTTTGTCTGAAAA GCCATGACGAATT GCAG AATTTGTCATGGC TGTATTCGATAGAGC TERM 2308 2105548 - 2105519 - T 95 -12.3 -4.07568 | opp_overlap 2105519 CCGTTTGTCTGAAAA GCCATGACGAATT GCAG AATTTGTCATGGC TGTATTCGATAGAGC alaS 2109770 - 2107107 - | alanyl-tRNA synthetase TERM 2309 2108460 - 2108492 + g 74 -13.4 -2.58663 | gap 1, overlap 2108459 2108488 TTCCATCGCCTTGTC GCCGGAGCCCG-ACC AACT GGCACGGGCTTCGGC CTTCTGACGCTGCAT TERM 2310 2109894 - 2109869 - R 100 -13.3 -4.90778 | CCTATCGAAAGAAAA GGGCCGGAGAT GTAA ATCCCCAGCCC GCAACAATGAACAGA recA 2111028 - 2109940 - | RecA protein Avi_2559 2111275 - 2112240 + | carbohydrate kinase Avi_2560 2112237 - 2113160 + | hypothetical protein TERM 2311 2113297 - 2113309 + F 77 -6.3 -4.70534 | CGCAATTTCACGTCT TCGAT AGT ATCGA TTTTCTCTATCTTTC lexA 2113551 - 2114270 + | LexA repressor Avi_2562 2117274 - 2114251 - | hypothetical protein TERM 2312 2117215 - 2117235 + g 70 -3.8 -4.68593 | opp_overlap 2117197, overlap 2117218 ACTATCCCATGGCAA GCCGCGCG CCGGA CGCGCTTC TTTTTGCCTGATCAG TERM 2313 2117218 - 2117232 + g 82 -8.5 -4.4521 | opp_overlap 2117197, overlap 2117215 ATCCCATGGCAAGCC GCGCG CCGGA CGCGC TTCTTTTTGCCTGAT TERM 2314 2117692 - 2117716 + G 71 -10.7 -3.52906 | overlap 2117691 GAAGCGGCACGATCG GCCCCGATGTT ATC GACATCGGCGC TCTTTATAAGCATAC TERM 2315 2117879 - 2117859 - g 70 -3.9 -4.57073 | opp_overlap 2117864, overlap 2117860 CAGCTGGCTGAAAAA GGCGACTTC CTG GAAGTCTGC TACCTGCTGCTCTAC TERM 2316 2117981 - 2117924 - g 70 -2.2 -4.83169 | gap 3, overlap 2117927 2117953 AGTCGCTCAGAAAAA GGACTTCGATCA-CCGCGTCACGCATCAC ACC ATGGTGCATGA-GCAGATG-TCGAAATTC TTCTCAGGCTACCGT cisY 2117619 - 2118908 + | citrate synthase TERM 2317 2118956 - 2118934 - f 100 -16.3 -3.64703 | opp_overlap 2118934 CCTGTCTTATGCAAA GCCCGGCGA TCAAT TCGCCGGGC TTTTTCGTGGGCCTG TERM 2318 2118934 - 2118956 + F 100 -16.3 -4.72986 | opp_overlap 2118934 CCTGTCTTATGCAAA GCCCGGCGA TCAAT TCGCCGGGC TTTTTCGTGGGCCTG TERM 2319 2120601 - 2120591 - g 74 -8.2 -4.12254 | GAGCAGCAGAAACAA GCGC TGG GCGC CAAGGTGGAGCAGTT ppiD 2119106 - 2120995 + | peptidyl-prolyl cis-trans isomerase trpD 2121017 - 2122039 + | anthranilate phosphoribosyltransferase trpC 2122036 - 2122851 + | indole-3-glycerol-phosphate synthase moaC 2122848 - 2123333 + | molybdenum cofactor biosynthesis protein C TERM 2320 2123547 - 2123577 + G 70 -11.8 -2.83522 | opp_overlap 2123543, overlap 2123546 CGGGGAGTGAATTGT CCGTGGTCGGCC AATCGGC GGCCGGGCACGG CTTTGATGGCAGGGT moeA 2123333 - 2124550 + | molybdopterin biosynthesis protein Avi_2570 2124646 - 2125329 + | hypothetical protein cbiP 2126784 - 2125330 - | cobyric acid synthase TERM 2321 2125549 - 2125533 - G 71 -7.9 -4.00038 | TACCATCAGCAGAAA TCGCCCC ATC GGCGCGA CCACGGATCGTCAGG TERM 2322 2127596 - 2127577 - g 88 -10.7 -4.4959 | opp_overlap 2127590 CTCAATGAACGAAAA GGGCGAG CCGGAT CTCGCCC CTGAGCTTTGGGTCA Avi_2573 2127353 - 2128351 + | ABC transporter substrate binding protein TERM 2323 2128451 - 2128403 - f 77 -11.9 -3.20723 | gap 1, opp_overlap 2128412 2128417, overlap 2128406 CCGTGATGAATTCAA TCACT-CGCACATGACGATAGA CATGTC TCTAACGTCATGTGCGCAGCGG CTTGGCCATGCCACC TERM 2324 2128448 - 2128406 - f 90 -14.4 -2.79684 | gap 1, opp_overlap 2128412 2128417, overlap 2128403 TGATGAATTCAATCA CT-CGCACATGACGATAGA CATGTC TCTAACGTCATGTGCGCAG CGGCTTGGCCATGCC Avi_2574 2128554 - 2129468 + | ABC transporter membrane spanning protein Avi_2575 2129461 - 2130513 + | ABC transporter nucleotide binding/ATPase protein TERM 2325 2130566 - 2130515 - T 72 -7.3 -4.18934 | gap 2, opp_overlap 2130519 2130521, overlap 2130516 2130518 TAGCAGCGGAATAAA TGATCTTGGCGGCAA-GCAG-GAGA TCGT CCCCACTGCCTTGCCGCCATGTTCT TCAATTCAGAATCGC TERM 2326 2130565 - 2130516 - T 72 -10.8 -3.10878 | gap 2, opp_overlap 2130519 2130521, overlap 2130515 2130518 AGCAGCGGAATAAAT GATCTTGGCGGCAA-GCAG-GAGA TCGT CCCCACTGCCTTGCCGCCATGTTC TTCAATTCAGAATCG TERM 2327 2130519 - 2130562 + T 72 -8.2 -3.73068 | gap 2, opp_overlap 2130518 2130516 2130515, overlap 2130521 AGCGGAATAAATGAT CTTGGCGGCAA-GCAG-GAG ATCGTC CCCACTGCCTTGCCGCCATG TTCTTCAATTCAGAA TERM 2328 2130521 - 2130560 + T 71 -9.4 -3.44686 | gap 2, opp_overlap 2130518 2130516 2130515, overlap 2130519 CGGAATAAATGATCT TGGCGGCAA-GCAG-GAG ATCGTC CCCACTGCCTTGCCGCCA TGTTCTTCAATTCAG Avi_2576 2131661 - 2130609 - | glycosyltransferase protein TERM 2329 2131585 - 2131555 - G 75 -5.2 -4.56597 | overlap 2131559 CGCGCCTCGCAAAAA GCAAGCGCACTGTC GAT GGCAGCGCGCGAAC CGTCGAGCGGGCGAT TERM 2330 2131581 - 2131559 - G 81 -11.2 -3.80855 | overlap 2131555 CCTCGCAAAAAGCAA GCGCACTGTC GAT GGCAGCGCGC GAACCGTCGAGCGGG TERM 2331 2131673 - 2131650 - G 77 -2.3 -5.04987 | AACACTCCGAAAAAA TGCGGGCCC CATGAC AAGCCCCCA TTGCAGAAAATAGCA Avi_2578 2132039 - 2132386 + | hypothetical protein TERM 2332 2132497 - 2132485 - g 76 -3.3 -5.02074 | CCACTTTTGAAAAAA CGTCC ACC GGATG CCAATATGCTGCTGG TERM 2333 2132829 - 2132841 + G 75 -5.5 -4.59773 | CAAGATGCGAGAGGG TGCTG ATC CGGCA TTTTTCAACATCGAC TERM 2334 2133003 - 2132993 - g 84 -2.4 -5.40474 | ATTTCGGGAAAAAAA TCCG TGT CGGT TATCTTTCGTCGGAT Avi_2579 2132383 - 2134149 + | hypothetical protein Avi_2581 2134996 - 2134172 - | hypothetical protein TERM 2335 2135269 - 2135323 + r 80 -11.7 -3.33509 | gap 2, opp_overlap 2135278, overlap 2135273 2135275 ACTCCTCTTCCCTCT CCCGA-AGCAGCTTTGCTTCAT-CCCT TGA AGGGCGTGAAGCAAAACTGCTGTTAGG TTGCGTTATTTAGCA TERM 2336 2135273 - 2135318 + r 85 -13.5 -3.22106 | gap 1, opp_overlap 2135278, overlap 2135269 2135275 CTCTTCCCTCTCCCG AAGCAGCTTTGCTTCAT-CCCT TGA AGGGCGTGAAGCAAAACTGCTG TTAGGTTGCGTTATT TERM 2337 2135275 - 2135316 + r 100 -16.1 -3.16564 | gap 1, opp_overlap 2135278, overlap 2135273 2135269 CTTCCCTCTCCCGAA GCAGCTTTGCTTCAT-CCCT TGA AGGGCGTGAAGCAAAACTGC TGTTAGGTTGCGTTA TERM 2338 2135313 - 2135278 - R 70 -10.6 -2.70932 | gap 1, opp_overlap 2135275 2135273 2135269 CCCTCTCCCGAAGCA GCTTTGCTTCA-TCCCT TGA AGGGCGTGAAGCAAAAC TGCTGTTAGGTTGCG Avi_2583 2135487 - 2135329 - | Entericidin B signal peptide protein Avi_2584 2135740 - 2136483 + | hypothetical protein cyc 2137879 - 2136500 - | cytochrome P450 Avi_2586 2138953 - 2137979 - | transcriptional regulator LysR family Avi_2589 2139284 - 2139568 + | hypothetical protein TERM 2339 2139585 - 2139570 - f 77 -10.4 -3.65425 | opp_overlap 2139572 2139580, overlap 2139573 GCGACATAGTTTAAA CAGCCC AAAA GGGCTG CTTCGGGCCTCGTTC Avi_2590 2139821 - 2140834 + | transcriptional regulator AraC family TERM 2340 2140830 - 2140817 - f 82 -9.5 -4.19238 | opp_overlap 2140812, overlap 2140802 2140803 CTGGCAACGGCAAAA GCGGC GGTT GCCGC ATAAGTATAATTCGC TERM 2341 2140862 - 2140910 + F 100 -14.8 -4.26903 | gap 1, opp_overlap 2140868 2140870 2140899, overlap 2140870 2140899 ACAGCCTACCGGTTT TTACAACACGCCCTCGTGCACCA TATT TGGTACACGAGGGCGT-TTCTGA TTTTCATGGAATCGC TERM 2342 2140905 - 2140868 - f 100 -20.7 -3.28924 | opp_overlap 2140862 2140870 2140899, overlap 2140870 2140899 TACCGGTTTTTACAA CACGCCCTCGTGCACCA TATT TGGTACACGAGGGCGTT TCTGATTTTCATGGA TERM 2343 2140870 - 2140903 + F 100 -21.1 -4.22407 | opp_overlap 2140868 2140870 2140899, overlap 2140862 2140899 CCGGTTTTTACAACA CGCCCTCGTGCACCA TATT TGGTACACGAGGGCG TTTCTGATTTTCATG TERM 2344 2140903 - 2140870 - f 100 -23.3 -3.21276 | opp_overlap 2140870 2140862 2140899, overlap 2140868 2140899 CCGGTTTTTACAACA CGCCCTCGTGCACCA TATT TGGTACACGAGGGCG TTTCTGATTTTCATG TERM 2345 2140899 - 2140935 + F 75 -4.3 -4.86385 | opp_overlap 2140870 2140868 2140899, overlap 2140870 2140862 ATATTTGGTACACGA GGGCGTTTCTGATTTTC ATG GAATCGCAGCAACGCTC TTTGTTTTTGCCCAT Avi_2591 2141142 - 2142338 + | hypothetical protein Avi_2593 2142390 - 2143022 + | hypothetical protein TERM 2346 2143298 - 2143280 - g 83 -11.8 -3.82202 | CACGCTCAAACAGAA GATGACCT ATC AGGTCATC GTCGAAAAATGCCAA TERM 2347 2143533 - 2143514 - g 81 -15 -2.53876 | overlap 2143499 2143496 CCTGACGGCAATCGA CCGGCTGC AATT GCAGCCGG AGGAATGCCTGATCC Avi_2594 2143053 - 2143682 + | hydrolase TERM 2348 2144944 - 2144920 - g 74 -2.7 -4.88918 | opp_overlap 2144932 2144933 TGAGGTGAAAGAAAA GGTGGCGATTT CCG ACAACGCGACC GTTGGCATCTATTAT exoN 2143679 - 2145163 + | UTP-glucose-1-phosphate uridylyltransferase TERM 2349 2145324 - 2145352 + G 81 -11.7 -3.72231 | opp_overlap 2145317, overlap 2145325 GGATTACATCTTCGT CATCCGCGAGGTT CCA AACCTCGCGGAGC TTGTTGAATATCTGC TERM 2350 2145325 - 2145351 + G 83 -15.2 -2.82856 | opp_overlap 2145317, overlap 2145324 GATTACATCTTCGTC ATCCGCGAGGTT CCA AACCTCGCGGAG CTTGTTGAATATCTG TERM 2351 2145670 - 2145657 - g 71 -8.1 -4.09685 | GGTGATCTCGGAAAA CGCCT CCGC AGGCG TATACATGTTCCGAA Avi_2596 2145169 - 2145864 + | dolichyl-phosphate mannose synthase sipf 2146999 - 2146046 - | prokaryotic type I signal peptidase TERM 2352 2146929 - 2146917 - G 86 -5.5 -5.0916 | overlap 2146920 CTGCCAAGATAAAAA CAGCC AAT AGCTG GAGAAAGAACAAGAG TERM 2353 2147016 - 2146994 - G 72 -4.9 -4.59993 | overlap 2146986 AAAGGCAGAAACAAA TTTCAACGG CTACT CCTTTGAAA AAGACTGAATATGAG TERM 2354 2147040 - 2147065 + r 95 -12 -4.41348 | opp_overlap 2147040 ATATGAGTCAAAAAA GCTGTGATGA AATTAA TCATCACAGC TTTCTTTGGAAAGAC TERM 2355 2147065 - 2147040 - R 100 -12 -5.11613 | opp_overlap 2147040 ATATGAGTCAAAAAA GCTGTGATGA AATTAA TCATCACAGC TTTCTTTGGAAAGAC nrdE 2150900 - 2147130 - | ribonucleoside-diphosphate reductase 2 alpha chain TERM 2356 2149375 - 2149387 + g 79 -5.5 -4.75472 | ACGGCATGTTCGTAA TCGGC AAT GTCGA TTTTCTTGGTATCGG TERM 2357 2151114 - 2151099 - H 70 -5.4 -4.32177 | gap 1 TCATGCCAGAACAAA TGGCCGC AGC GCG-CCA GAAAAATTCACAAGG TERM 2358 2151989 - 2151963 - g 75 -9.3 -3.89336 | overlap 2151957 2151964 CCAAGGAAACCGAAA CGCGCTCCAGC GAAAT GCTGGCGCGCC TGCCAAAGATCGCGG TERM 2359 2151988 - 2151964 - g 74 -12.8 -2.92878 | overlap 2151963 2151957 CAAGGAAACCGAAAC GCGCTCCAGC GAAAT GCTGGCGCGC CTGCCAAAGATCGCG TERM 2360 2152179 - 2152169 - g 74 -2.4 -4.87665 | CTTGACGGACAAAAA GCGG TGA CGGC GGCGGTCAAGGTCTA TERM 2361 2153176 - 2153199 + G 70 -11.7 -2.78015 | gap 1, opp_overlap 2153143 2153174, overlap 2153175 2153182 TGGTGTCGAAGCAGC CCGCG-CCGG AGAGG CCGGACGCGG CTTTGCCGTCGTTGC mcpA 2151704 - 2153605 + | methyl-accepting chemotaxis protein TERM 2362 2153687 - 2153646 - T 100 -15.3 -5.2696 | opp_overlap 2153653, overlap 2153648 2153653 CCAAAAGCTAAAAAA TCCAAAAGCCCCTGTGCTT GAAA AAGCGCAGGGGCTTTTTAA TTCAGGGATGCAATG TERM 2363 2153685 - 2153648 - T 95 -15.7 -2.83103 | opp_overlap 2153653, overlap 2153646 2153653 AAAAGCTAAAAAATC CAAAAGCCCCTGTGCTT GAAA AAGCGCAGGGGCTTTTT AATTCAGGGATGCAA TERM 2364 2153653 - 2153680 + T 100 -17.8 -4.8622 | opp_overlap 2153648 2153646 2153653 CTAAAAAATCCAAAA GCCCCTGTGCTT GAAA AAGCGCAGGGGC TTTTTAATTCAGGGA TERM 2365 2153680 - 2153653 - T 100 -15.6 -4.5366 | opp_overlap 2153653, overlap 2153648 2153646 CTAAAAAATCCAAAA GCCCCTGTGCTT GAAA AAGCGCAGGGGC TTTTTAATTCAGGGA Avi_2601 2154301 - 2153723 - | hypothetical protein gpt 2154898 - 2154401 - | xanthine-guanine phosphoribosyltransferase TERM 2366 2154966 - 2154936 - R 77 -8.2 -4.08872 | opp_overlap 2154945 AAAGACAGAAGGAAA GGCAACCGAAGCGC TTC GCGTTTCAACCGCC CGCCGCGTCATCGCA TERM 2367 2155193 - 2155158 - R 100 -16.4 -3.5627 | gap 1, opp_overlap 2155164, overlap 2155146 2155160 AGAGGATGCCGGAAA CAGTAAGGCATCCGGTT AGA AACCGAATGCCTTAC-G TCAACACATTTTTCA TERM 2368 2155192 - 2155160 - R 100 -20.1 -3.35775 | opp_overlap 2155164, overlap 2155146 2155158 AGGATGCCGGAAACA GTAAGGCATCCGGTT AGA AACCGAATGCCTTAC GTCAACACATTTTTC TERM 2369 2155164 - 2155188 + r 83 -12.9 -3.05715 | opp_overlap 2155146 2155160 2155158 TGCCGGAAACAGTAA GGCATCCGGTT AGA AACCGAATGCC TTACGTCAACACATT Avi_2605 2156060 - 2155221 - | hypothetical protein cinA 2157090 - 2156308 - | competence-damage associated protein TERM 2370 2156975 - 2156990 + g 71 -10.4 -3.52995 | opp_overlap 2156975, overlap 2156973 GCCAGGGTCAGCACA TCGGCC AGAT GGCCGA TATTCTTGTCCTTGG TERM 2371 2157297 - 2157307 + r 79 -2.4 -5.2189 | opp_overlap 2157286 GAGAGACGAAATTAT CGGC TAC GCCA TTTTTTCGTCCTTGC TERM 2372 2157400 - 2157358 - R 100 -15.7 -3.55444 | gap 1, overlap 2157360 2157361 2157364 CCTCCATCCGCCAAA CAGCAAGCCGCCCTGCGT GAGAGAAA ACGCAGGGCGGCTTGA-G CAACAAGACGATAGA TERM 2373 2157399 - 2157360 - R 100 -19.4 -3.35597 | overlap 2157358 2157361 2157364 TCCATCCGCCAAACA GCAAGCCGCCCTGCGT GAGAGAAA ACGCAGGGCGGCTTGA GCAACAAGACGATAG TERM 2374 2157398 - 2157361 - R 100 -22.9 -2.61144 | overlap 2157360 2157358 2157364 CCATCCGCCAAACAG CAAGCCGCCCTGCGT GAGAGAAA ACGCAGGGCGGCTTG AGCAACAAGACGATA TERM 2375 2157395 - 2157364 - R 100 -18.8 -3.45571 | overlap 2157361 2157360 2157358 TCCGCCAAACAGCAA GCCGCCCTGCGT GAGAGAAA ACGCAGGGCGGC TTGAGCAACAAGACG TERM 2376 2157453 - 2157428 - R 77 -8.3 -4.08279 | opp_overlap 2157438 AGAGCCGAGAAATAA GCACCGGTTTT CGGA AAATCCGATGC TGTCACAGGGTCTTA mcpA 2159433 - 2157466 - | methyl-accepting chemotaxis protein TERM 2377 2158610 - 2158626 + g 75 -5.7 -4.59773 | overlap 2158606 ACTTCACTCATGTCG CGGACCG CAG CGGCCTG TTTTTCCAGCTCGCG TERM 2378 2160275 - 2160230 - R 100 -3.5 -5.61881 | gap 1, overlap 2160231 GTGTAAAAACAAAAA CTTAAAGCGTGTTGCTTG AGGCTGATAAG CC-GCAACACGCTTTAAA AACATTAATCTGAAG TERM 2379 2160423 - 2160396 - R 100 -17 -4.19817 | GCCATCTATGCAAAA CGCCCCGGACCG AGGT CGGTCCAGAGCG TCAAAGTAAACAGGC cheW 2160953 - 2160480 - | chemotaxis protein Avi_2611 2161907 - 2161470 - | hypothetical protein sdaA 2163356 - 2161953 - | L-serine dehydratase TERM 2380 2162480 - 2162493 + g 87 -8.1 -4.78572 | overlap 2162479 GCGCCGTCACCACCC TGCCG CCAG CGGCA TTTTCTTCGTTGACA TERM 2381 2163345 - 2163335 - G 71 -6.8 -4.11216 | TGCCGATCTTGAAAA CGTC GAA GACG GAAAGAAACATGCAA TERM 2382 2163504 - 2163478 - H 100 -18 -5.46706 | opp_overlap 2163480 ACCGCAAAACAAAAA CAGCGCGGCTCG TCT CCAGCCGCGCTG TCGTCCCCCGCCGTA TERM 2383 2163480 - 2163502 + H 90 -14.8 -2.78384 | opp_overlap 2163478 CGCAAAACAAAAACA GCGCGGCTCG TCT CCAGCCGCGC TGTCGTCCCCCGCCG Avi_2613 2163844 - 2164617 + | hypothetical protein Avi_2615 2164746 - 2165714 + | hypothetical protein Avi_2616 2165726 - 2166202 + | Transmembrane protein TERM 2384 2166265 - 2166235 - T 100 -12.6 -4.79223 | opp_overlap 2166234 2166235, overlap 2166236 TGAGATTAGCAAAAA GGGTGTCGGCTCAC TCT ATGAACCGACACCA ATTTCCACCAGACGG TERM 2385 2166264 - 2166236 - T 100 -16.1 -3.46811 | opp_overlap 2166235 2166234, overlap 2166235 GAGATTAGCAAAAAG GGTGTCGGCTCAC TCT ATGAACCGACACC AATTTCCACCAGACG Avi_2617 2166642 - 2166250 - | transcriptional regulator MerR family TERM 2386 2166681 - 2166696 + r 77 -3.3 -5.08601 | opp_overlap 2166675 ATAATCATATTAACT TTGAC GTAAAA GTCAA TTTTTGTTCACCTCA mgtE 2168217 - 2166802 - | magnesium transport protein cobD 2169310 - 2168339 - | cobalamin biosynthesis protein CobD TERM 2387 2168974 - 2168960 - G 78 -11.4 -3.67597 | GCCCTCATGCAACAA GCCGTC GGC GACGGC CTTCACATGGTCCAG cobC 2170320 - 2169307 - | cobalamin biosynthetic protein TERM 2388 2170127 - 2170115 - G 75 -5.5 -4.56597 | overlap 2170116 2170117 CCGCTGCCGTAAAAA TCGCG CGC CGCAA GCCGGGCTGCGTCCT cobB 2171627 - 2170317 - | cobyrinic acid a TERM 2389 2171512 - 2171490 - G 78 -11.3 -3.72576 | opp_overlap 2171476 2171507, overlap 2171506 2171507 TGCCGCCGCATGAAA GGCCGGATC GATAT AATCCGGCC CGGCCTTGCCCGGCG cobA 2172466 - 2171624 - | uroporphyrin-III C-methyltransferase cbiD 2172675 - 2173736 + | cobalamin biosynthetic protein cobK 2173720 - 2174409 + | precorrin-6x reductase cheD 2175027 - 2174470 - | chemotaxis protein Avi_2631 2175945 - 2175523 - | acetyltransferase protein TERM 2390 2175898 - 2175860 - G 73 -11.9 -3.05963 | gap 1, opp_overlap 2175860 ATCCGCAGCGCAATA TCTT-CGACCGAACTGGG ATAG CCGAGTTCGGTCATAAGA TTTGCCAGCGTCGGA TERM 2391 2175909 - 2175921 + g 77 -7.7 -4.38154 | opp_overlap 2175917 TAAGATTTGCCAGCG TCGGA AAG TCCGA TTTTATCGCAGGTCT iunH 2177000 - 2176041 - | inosine-uridine preferring nucleoside hydrolase TERM 2392 2176456 - 2176439 - G 71 -10.5 -3.56558 | CAAGACCAACCACAA CCACCGG CCAG CCGGCGG TGAAGACGATATCGG TERM 2393 2176728 - 2176678 - G 88 -13.3 -3.78775 | gap 2, opp_overlap 2176677 GTCTCGACGATGAAA CGATGCGCCGGGCGCGGATGGAGCG GCA CG-TCCA-CGGCATCCGGCACACCG ATATTGCCAAGTCCG cobM 2177880 - 2177089 - | precorrin-4 C11-methyltransferase cobJ 2179720 - 2177882 - | precorrin-3B C17-methyltransferase TERM 2394 2178205 - 2178182 - G 82 -10.2 -4.14243 | TACCGGATTGTAAAA GGCGATGACG AAAT CGCCCTCGCC CGCCGCCTTCACCCG TERM 2395 2178437 - 2178421 - G 83 -12.3 -3.89346 | TCGCCATGGCATAAA TTCCGGC ATC GCCGGAA CAGACCAGCGCCACT TERM 2396 2178464 - 2178496 + g 83 -11.9 -3.81146 | CACTGTCTTGCCCTC GCCCGCCAGTTCCAT CGC ATGGACCACGCGGGC TTCTTCCTTGCCAAG cobI 2180454 - 2179720 - | precorrin-2 C20-methyltransferase cobL 2181677 - 2180451 - | precorrin-6y methyltransferase cobH 2183169 - 2181670 - | precorrin isomerase TERM 2397 2182139 - 2182092 - G 83 -14 -3.50393 | overlap 2182093 2182133 CCGCATCGCAGAGAA TGGGCGCACCGGCGGCAAGTGC CGCA GCACCTGCCTCAAACGCGCCCT GCGAAAACACGATGT TERM 2398 2182138 - 2182093 - G 87 -17.5 -2.70022 | overlap 2182092 2182133 CGCATCGCAGAGAAT GGGCGCACCGGCGGCAAGTGC CGCA GCACCTGCCTCAAACGCGCCC TGCGAAAACACGATG Avi_2641 2184653 - 2183322 - | hypothetical protein Avi_2642 2184990 - 2185775 + | hypothetical protein Avi_2643 2185840 - 2186088 + | hypothetical protein TERM 2399 2186082 - 2186071 - f 71 -2.2 -4.88407 | TCACTCAATGAAAAA CTCG ACCG CGAA CAATGAGCGGCAAAA TERM 2400 2186171 - 2186161 - g 73 -3.2 -4.75472 | GTTACACCAACAAAA CCTG GGG CAAG CGTCAGAGAAACGAT Avi_2644 2186085 - 2186387 + | plasmid stabilization protein cobO 2187066 - 2186422 - | cob(I)alamin adenosyltransferase TERM 2401 2186973 - 2186983 + g 77 -2.4 -5.08088 | TCGCCATGATCTTGT CGCG CGC CGCC TTTTTCTTCGCCATT cobN 2190845 - 2187063 - | cobaltochelatase CobN subunit TERM 2402 2187795 - 2187816 + g 71 -7.1 -4.25104 | overlap 2187797 2187802 CCCGAACACCCGGTA GCCCGCCCG GCGG CTGGCGGTC TTTTCGTCCAGCCCC TERM 2403 2190515 - 2190472 - G 87 -9.5 -4.58395 | gap 1, opp_overlap 2190480 2190481 2190493 TCCAGGTTTGAAAAA GCC-TCCAGCCCGGCATC CGGCTTGTC GTCGCCGGGCAGGACGGC AATTTTGATCCCATG cobW 2191922 - 2190849 - | cobalamin biosynthesis protein CobW cobU 2192453 - 2191926 - | cobinamide kinase/cobinamide phosphate guanylyltransferase Avi_2651 2192760 - 2192458 - | hypothetical protein TERM 2404 2192706 - 2192694 - G 73 -3.3 -4.7629 | overlap 2192697 GCAGCAACGCAAAAA CCAGC GCC GCCAG CACAAGCAGAGCTAA TERM 2405 2192812 - 2192799 - R 70 -5.9 -4.16943 | CGGCATACTGCAAAA CGGCC AAAA GACCG TGGAGCGGAGGCTGG TERM 2406 2193063 - 2193076 + r 74 -8.1 -4.14739 | CCGGCAGATCGCTTT GCCAC TCCA GTGGC TTTTCCGGTCCGTCC TERM 2407 2193178 - 2193155 - R 76 -7.4 -4.20106 | gap 1, opp_overlap 2193173 AAACCGGATGGAAAA CCCTCG-CTGT TCT ACAGTCGCGGG GTCGGCTGCGTTTGG Avi_2652 2193794 - 2193330 - | hypothetical protein Avi_2653 2194245 - 2194388 + | hypothetical protein TERM 2408 2194426 - 2194442 + F 100 -11.5 -4.84918 | opp_overlap 2194426 AATTGACTGTATGAA CGGCGCT TTT GGCGCCG TTTTCTATTTCTGGA TERM 2409 2194442 - 2194426 - f 74 -10.8 -3.1706 | opp_overlap 2194426 AATTGACTGTATGAA CGGCGC TTTTG GCGCCG TTTTCTATTTCTGGA TERM 2410 2195019 - 2195036 + G 86 -9.1 -4.57073 | opp_overlap 2195018, overlap 2195000 2194997 ATCCGCTCGGAAACC GGCGAGG ATGC CCTTGCC TTTTTCGACGCCATC gidA 2194542 - 2195999 + | glucose inhibited division protein A Avi_2655 2196715 - 2196071 - | hypothetical protein crtB 2197591 - 2196779 - | phytoene synthase TERM 2411 2197667 - 2197679 + r 81 -10.5 -3.61517 | opp_overlap 2197663 CTGCAATCAATGCGG CGGCC ACG GGCCG TTCTTCCGCCAGCAT Avi_2657 2198033 - 2197647 - | hypothetical protein secD 2200607 - 2198037 - | protein-export membrane protein SECD TERM 2412 2200803 - 2200776 - R 100 -10.4 -5.35459 | opp_overlap 2200777, overlap 2200777 2200778 2200780 AGACAGCAGAAAAAA GTCAGGCCGCCC TGTT GGGCGGCCCGGT GTTCAAACTTGGGTC TERM 2413 2200777 - 2200802 + r 87 -13.9 -3.0644 | opp_overlap 2200777 2200776 2200778 2200780 GACAGCAGAAAAAAG TCAGGCCGCCC TGTT GGGCGGCCCGG TGTTCAAACTTGGGT TERM 2414 2200802 - 2200777 - R 100 -13.9 -3.79649 | opp_overlap 2200777, overlap 2200776 2200778 2200780 GACAGCAGAAAAAAG TCAGGCCGCCC TGTT GGGCGGCCCGG TGTTCAAACTTGGGT TERM 2415 2200801 - 2200778 - R 100 -17.4 -2.86705 | opp_overlap 2200777, overlap 2200777 2200776 2200780 ACAGCAGAAAAAAGT CAGGCCGCCC TGTT GGGCGGCCCG GTGTTCAAACTTGGG TERM 2416 2200799 - 2200780 - R 100 -16.4 -2.9676 | opp_overlap 2200777, overlap 2200778 2200777 2200776 AGCAGAAAAAAGTCA GGCCGCCC TGTT GGGCGGCC CGGTGTTCAAACTTG yajC 2201188 - 2200817 - | preprotein tranlocase protein Avi_2661 2201398 - 2202264 + | hypothetical protein TERM 2417 2202324 - 2202297 - T 100 -16.4 -3.1506 | opp_overlap 2202301, overlap 2202301 AAAGCCCCTTATGAA GAAAGGCCCGGA TTGC TCCGAGCCTTTC TCAACTTTCCTGAAA TERM 2418 2202301 - 2202320 + T 78 -9.2 -3.95621 | opp_overlap 2202297 2202301 CCCCTTATGAAGAAA GGCCCGGA TTGC TCCGAGCC TTTCTCAACTTTCCT TERM 2419 2202320 - 2202301 - T 93 -11.4 -4.24342 | opp_overlap 2202301, overlap 2202297 CCCCTTATGAAGAAA GGCCCGGA TTGC TCCGAGCC TTTCTCAACTTTCCT Avi_2662 2203996 - 2202380 - | lipoprotein pcm 2204901 - 2204248 - | protein-L-isoaspartate O-methyltransferase TERM 2420 2204863 - 2204874 + g 72 -5.8 -4.40963 | opp_overlap 2204862 CAGCCGCAATACCAG GGCT GCAA AGCC TTCTTTTTCAAGCAT surE 2205668 - 2204898 - | 5'/3'-nucleotidase SurE serS 2207086 - 2205803 - | seryl-tRNA synthetase tatC 2207940 - 2207128 - | SEC-independent protein translocase protein TERM 2421 2207583 - 2207608 + g 73 -3.1 -4.82901 | opp_overlap 2207587, overlap 2207584 2207587 CCGGAGAGGCGACCA GGAACGGCAGG AAGG CCTGGCGCTCG TTTTTATAAAGGCCC TERM 2422 2207726 - 2207716 - G 77 -2.4 -5.10461 | CTGAGTGAAGAAAAA CTCC TGC GGTG CCGTATAAATCAGCT tatB 2208887 - 2207937 - | SEC-independent protein translocase protein TERM 2423 2208365 - 2208383 + g 86 -8.8 -4.62336 | CCGACTTTGGCTTTC GCACCCGT TTC ACCGGTGC TTTTTCCACTGGGGT TERM 2424 2208963 - 2208936 - R 81 -9.8 -3.89822 | overlap 2208938 GACCCATTCCAGAAA CAGACCGGCGCC GTCG GGCACCGATCTC ACTCAATTCCAAGCG TERM 2425 2208961 - 2208938 - R 86 -12.4 -3.53733 | overlap 2208936 CCCATTCCAGAAACA GACCGGCGCC GTCG GGCACCGATC TCACTCAATTCCAAG tatA 2209197 - 2208982 - | SEC-independent protein translocase protein Avi_2670 2210108 - 2209392 - | hypothetical protein Avi_2671 2210935 - 2210114 - | hypothetical protein Avi_2673 2212011 - 2210995 - | glycosyl hydrolase TERM 2426 2212121 - 2212095 - R 100 -15.2 -4.06719 | AAAAAGCAGCAGAAA GGGCGCTATTCT TAG AGAAAAGCGCCC TGAAACGAAGTCACA TERM 2427 2212167 - 2212147 - R 72 -7.5 -3.94746 | TCACATTCAATCAAA GGGAACCGT AAA AAGGCTCCC CTATGCCTTTAGCGC Avi_2674 2214911 - 2212176 - | hypothetical protein TERM 2428 2214166 - 2214152 - G 71 -7 -4.11371 | CAACAGGCTGGAAAA GCGGCG GTT CGCGGC GCTGGGCGACAGCAT TERM 2429 2214305 - 2214347 + g 76 -12.7 -3.14132 | gap 1 CGGCTGCCTCAACCG GAGCAGGCTCCATCACCGGC TCTT GCCGCTGGCGG-GTCTGCTC TTCATGGCGAGCCGC argS 2216695 - 2214938 - | arginyl-tRNA synthetase dgt 2217975 - 2216758 - | deoxyguanosinetriphosphate triphosphohydrolase Avi_2678 2218170 - 2218502 + | hypothetical protein TERM 2430 2218588 - 2218540 - f 90 -13.2 -3.53091 | gap 1 ATTCTCCGTGGCAAA CGGCAGGCTTTCCGTTAGAACCG GGGC CTGAACCAA-GGAAAGCCTGCCG ATGAAAATTGCCACC Avi_2680 2218589 - 2219383 + | exonuclease III exoR 2220222 - 2219407 - | exopolysaccharide production negative regulator TERM 2431 2220872 - 2220905 + r 84 -11 -3.75169 | opp_overlap 2220872 GCTCCATTAGGCAAA TGGCACGATCGCTC ATTTAA GAGCAACCGTGCCA TTTCATAGAGTCATG TERM 2432 2220905 - 2220872 - R 100 -15.4 -3.68351 | opp_overlap 2220872 GCTCCATTAGGCAAA TGGCACGATCGCTC ATTTAA GAGCAACCGTGCCA TTTCATAGAGTCATG fadL 2221966 - 2220929 - | long-chain fatty acid transport protein TERM 2433 2222451 - 2222430 - R 100 -7.9 -5.1861 | TTCACGATCAAAAAA CCGAGGGCG TTTC CACCTTCGG GTACAATCACAATGG TERM 2434 2222523 - 2222563 + r 100 -16.4 -4.90906 | opp_overlap 2222529, overlap 2222524 ATCACACACGGCCAC AGAAAACCTGTCTGGTTT TGATT GAACCAGACAGGTTTTCA TTTTTCCTATTATCG TERM 2435 2222524 - 2222562 + r 100 -19.9 -3.53459 | opp_overlap 2222529, overlap 2222523 TCACACACGGCCACA GAAAACCTGTCTGGTTT TGATT GAACCAGACAGGTTTTC ATTTTTCCTATTATC TERM 2436 2222557 - 2222529 - R 100 -13.3 -4.53303 | opp_overlap 2222524 2222523 CACGGCCACAGAAAA CCTGTCTGGTT TTGATTG AACCAGACAGG TTTTCATTTTTCCTA valS 2225476 - 2222633 - | valyl-tRNA synthetase TERM 2437 2223878 - 2223888 + g 76 -3.2 -5.00616 | CGGATAATAGCGCGC CACT TCC GGTG TTTTTTCCGGCCAGC TERM 2438 2224054 - 2224068 + g 75 -9.2 -3.83705 | GATAATGTTGAATGG CGGCGT GAA GCGCCG TTTCCTCGTCCTTTT TERM 2439 2225622 - 2225602 - R 91 -7.5 -5.05577 | opp_overlap 2225602 2225611 AAAGGAAAGCAAAAA GCCGCCC ATTCACA AGGCGGC TTCTGATTGTTCCAG Avi_2684 2226613 - 2225690 - | hypothetical protein Avi_2686 2228337 - 2226919 - | Outer membrane secretion protein TERM 2440 2228538 - 2228522 - R 71 -10.9 -2.90054 | opp_overlap 2228521, overlap 2228517 CATCAAACGACGACA GCCCTTA TTC TAAGGGC CTAGATTGCGTGAAG TERM 2441 2228933 - 2228895 - R 70 -6 -4.26188 | opp_overlap 2228896 2228896, overlap 2228851 2228896 2228899 2228905 CTGAGATATTCAAAA TGGATACGAACGATCATT CAC AATGACCGTTCGCAAACC TTCTGCCGCGATGAT TERM 2442 2228929 - 2228899 - R 85 -14.2 -2.77118 | opp_overlap 2228896 2228896, overlap 2228896 2228895 2228905 GATATTCAAAATGGA TACGAACGATCATT CAC AATGACCGTTCGCA AACCTTCTGCCGCGA pcm 2229571 - 2228948 - | protein-L-isoaspartate O-methyltransferase Avi_2689 2230167 - 2230682 + | hypothetical protein Avi_2691 2231338 - 2231841 + | hypothetical protein accG 2232997 - 2232179 - | arabinose phosphate phosphatase accF 2233790 - 2232990 - | agrocinopine phosphodiesterase TERM 2443 2233288 - 2233305 + g 72 -4.9 -4.60924 | gap 1, opp_overlap 2233279 ATCAGACCGACGGTC GGCACATC AGG GAT-TGCC TTTTTCACCGCTTTC accE 2234673 - 2233807 - | ABC transporter membrane spanning protein (agrocinopine) accD 2235592 - 2234675 - | ABC transporter membrane spanning protein (agrocinopine) accC 2236638 - 2235589 - | ABC transporter nucleotide binding/ATPase protein (agrocinopine) accB 2237570 - 2236635 - | ABC transporter nucleotide binding/ATPase protein (agrocinopine) accA 2239203 - 2237638 - | ABC transporter substrate binding protein (agrocinopine) accR 2240064 - 2239252 - | transcriptional regulator TERM 2444 2240176 - 2240161 - R 78 -7.6 -4.42653 | opp_overlap 2240161 ATGCTAGGGAGAAAA TGATCG AAAA CGATCA TTCATAAAGGCCTTT Avi_2704 2241691 - 2240777 - | Transcriptional regulator Avi_2705 2241807 - 2242835 + | ABC transporter substrate binding protein (spermidine/putrescine) Avi_2706 2242904 - 2243947 + | ABC transporter nucleotide binding/ATPase protein attA2 2244031 - 2244810 + | ABC transporter membrane spanning protein (mannopine) Avi_2708 2244820 - 2245614 + | ABC transporter membrane spanning protein (polyamine) noxB 2245618 - 2246712 + | D-nopaline dehydrogenase Avi_2710 2246705 - 2246998 + | hypothetical protein noxA 2247001 - 2248395 + | D-nopaline dehydrogenase TERM 2445 2248682 - 2248655 - T 77 -8.4 -4.07568 | overlap 2248656 2248659 GTGGGTGCCTGAAAA TCAAGCGCCAGC GCGC GCTTGCGCTCAA GCAAAACTGGCTAGA TERM 2446 2248678 - 2248659 - T 73 -9.2 -3.66908 | overlap 2248656 2248655 GTGCCTGAAAATCAA GCGCCAGC GCGC GCTTGCGC TCAAGCAAAACTGGC Avi_2713 2250571 - 2249072 - | hypothetical protein TERM 2447 2249902 - 2249912 + g 78 -3.2 -5.14965 | overlap 2249890 TGATCGCCGTGATCT TCTC AGC GAGG TTTTTTGCTCGCGGT TERM 2448 2249995 - 2250017 + g 72 -8.4 -3.86897 | TGTACTCGGTCAGCC GTTCGTCCGC CTC GCGGATAAAC TTTGTCAGAGCTGCC TERM 2449 2250420 - 2250387 - G 71 -10.3 -3.54424 | opp_overlap 2250415, overlap 2250416 CCGGATGCCTGCAAA TCCAGCCCATCGATG AAGG CTTCGATGAACCGGA CCGGGTTGTCCGGGC Avi_9914 2250589 - 2251116 + | kinase TERM 2450 2251162 - 2251141 - T 72 -5.7 -4.56133 | overlap 2251143 CCTCAATAAGGAAAA CGTGCCCAG ACCT CGGGGCAAG AAGTGGCACGATACC Avi_2714 2252676 - 2251648 - | hypothetical protein Avi_2715 2252792 - 2252926 + | IS3 family transposase TERM 2451 2253020 - 2253037 + F 78 -8.4 -4.20806 | ATGAATTATTTCAAC GGGGCA CGTCAA TGCCCC TTTCCTTTTGAAATC Avi_2717 2253106 - 2253273 + | hypothetical protein TERM 2452 2253317 - 2253275 - T 90 -12.9 -3.53012 | gap 1, opp_overlap 2253285, overlap 2253285 TTGCGGTGTTCTAAA TCA-CAAAAAACCCCGTCAG GATG CTGCCGGGGTTTTTGGCTGA TCATCGCTCATAGGG TERM 2453 2253306 - 2253285 - T 100 -11.5 -5.42265 | opp_overlap 2253285, overlap 2253275 CTAAATCACAAAAAA CCCCGTCAG GATG CTGCCGGGG TTTTTGGCTGATCAT TERM 2454 2253285 - 2253306 + T 100 -11.5 -4.68994 | opp_overlap 2253275 2253285 CTAAATCACAAAAAA CCCCGTCAG GATG CTGCCGGGG TTTTTGGCTGATCAT Avi_2719 2253599 - 2253318 - | hypothetical protein TERM 2455 2254010 - 2253998 - H 70 -5.5 -4.386 | GAAGGCTCGACAAAA GCTGA TTG CCAGC GGGACTATGTCGCTC Avi_2721 2254484 - 2254744 + | dehydrogenase Avi_2722 2255619 - 2254858 - | ABC transporter membrane spanning protein Avi_2723 2256542 - 2255616 - | ABC transporter nucleotide binding/ATPase protein TERM 2456 2255734 - 2255720 - G 75 -8.5 -4.09739 | overlap 2255730 CCAACGCCGTCAAAA GCGCC ATCAA GGCGC CGGGCGTTGCCTGCG Avi_2724 2256890 - 2256663 - | GGDEF family protein TERM 2457 2256989 - 2256948 - R 100 -14.7 -3.55444 | TGTTTAGCGCTTAAA TCCGTCATTCCTTAAATCC GAAT AGATCTAAGGAATGACGCA GAATATAGAAAGCGT rrpX 2257925 - 2257092 - | two component response regulator TERM 2458 2258058 - 2258026 - R 100 -17.9 -3.95324 | opp_overlap 2258032, overlap 2258032 TATGCTTAATAAGAA CAAAAAGGCGGCC CAGAGGT GGCCGCCTTTTTG GATAGATTCAGCGCG TERM 2459 2258052 - 2258032 - R 100 -11.1 -5.3798 | opp_overlap 2258032, overlap 2258026 TAATAAGAACAAAAA GGCGGCC CAGAGGT GGCCGCC TTTTTGGATAGATTC TERM 2460 2258032 - 2258052 + r 100 -11.1 -4.68424 | opp_overlap 2258026 2258032 TAATAAGAACAAAAA GGCGGCC CAGAGGT GGCCGCC TTTTTGGATAGATTC Avi_2727 2260821 - 2258182 - | dimethylglycine dehydrogenase TERM 2461 2259402 - 2259425 + g 70 -3.8 -4.56597 | gap 1, overlap 2259403 2259405 CGGCACCCATCTTCT TCA-ACCGGTC ATA GACCGGCGTGG TTTTTAACGGACGGG TERM 2462 2260422 - 2260393 - G 71 -7.1 -4.2074 | gap 1, opp_overlap 2260394 GGCGTAATACATAAA CTCGTCC-CAGCGA TCC TTGCTGCGGGCGAG ACGAATATTGGAGAC Avi_2728 2261779 - 2260931 - | DNA-binding protein Avi_2729 2262038 - 2262832 + | SAM-dependent methyltransferase TERM 2463 2262931 - 2262885 - T 77 -11.5 -3.14564 | gap 1, opp_overlap 2262890 2262930, overlap 2262888 2262891 GCAGTTGCCGATCAA GAAGCAGGCGATGGTGGCAGCG GTGC CGCTGCCGCCA-CGACATCTTC CGCATCAGCGGCTTC TERM 2464 2262890 - 2262926 + T 72 -10.8 -3.04144 | gap 1, opp_overlap 2262888 2262885 2262891 TGCCGATCAAGAAGC AGGCGATGGTGGCAGCG GTGC CGCTGCCGCCA-CGACA TCTTCCGCATCAGCG TERM 2465 2262925 - 2262891 - T 78 -12.1 -2.96249 | gap 1, opp_overlap 2262890, overlap 2262888 2262885 GCCGATCAAGAAGCA GGCGATGGTGGCAGCG GTGC CGCTGCCGCCA-CGAC ATCTTCCGCATCAGC kefA 2265358 - 2262881 - | potassium efflux system KEFA TERM 2466 2264961 - 2264977 + g 77 -10.1 -3.90744 | overlap 2264962 GCAGGCTGGCCGTCC TTCGGCG GAT CGCCGAG TTCTTTCAAGCGAGC TERM 2467 2265731 - 2265708 - R 100 -13.8 -5.1166 | CAGCAAAAGCAAAAA GCCGCCGGGA ACGT TTCCGGCGGC TAAGCAAAGCTCTAG Avi_2731 2266315 - 2265782 - | hypothetical protein Avi_2732 2266664 - 2266323 - | hypothetical protein TERM 2468 2266747 - 2266691 - H 82 -11.9 -3.53224 | gap 1, opp_overlap 2266691 2266706, overlap 2266692 CACGTTGGCTGGAAA TGCGATGCTGCATAATTCCTCAAACC GGAATT GGCTTGAGGAATTATGCAGCAG-ATA GAAAGCGTTACAGCG TERM 2469 2266745 - 2266692 - H 77 -12.1 -2.71791 | gap 2, opp_overlap 2266691 2266706, overlap 2266691 ACGTTGGCTGGAAAT GCGATGCTGCATAATTCCTCAAACC GGAATT GGCTTGAGGAATTATGCAGCA--GA TAGAAAGCGTTACAG hmuT 2266953 - 2267891 + | ABC transporter substrate binding protein (hemin) TERM 2470 2268909 - 2268920 + G 78 -3.6 -4.98436 | TCGTCACAGCACTGA TCGG CGCG CCGG TTTTTCTGCTCTTGC hmuU 2267888 - 2268973 + | ABC transporter membrane spanning protein (hemin) hmuV 2269003 - 2269791 + | ABC transporter nucleotide binding/ATPase protein (hemin) Avi_2737 2270925 - 2270008 - | hypothetical protein TERM 2471 2271379 - 2271347 - H 72 -7.2 -4.19238 | gap 1, opp_overlap 2271346 2271368, overlap 2271350 GTCTGAATTGTAAAA TGATTTCCACAGAAA TGCC CCTCTGTGGAAA-CA CTGATATCTCCTCTC Avi_2738 2272121 - 2273560 + | hypothetical flagellin TERM 2472 2273725 - 2273772 + G 80 -10.7 -4.07568 | gap 3 ACGGGATCCAACGTG GGAGCT-GGGC-GGTCGG-CGTTG GAG CAACGGCCGGCCCGCTCAAGGTCC TTTTCGAAACCGGCC TERM 2473 2274885 - 2274914 + G 100 -19.4 -3.03124 | opp_overlap 2274869, overlap 2274887 CCGATGGATGATCCA TACGGCGGCGAG CATCTA CTCGCCGCCGTA TATTCGGCAATCCGA TERM 2474 2274887 - 2274912 + G 91 -17.6 -3.07344 | opp_overlap 2274869, overlap 2274885 GATGGATGATCCATA CGGCGGCGAG CATCTA CTCGCCGCCG TATATTCGGCAATCC Avi_2739 2273622 - 2275577 + | hypothetical protein Avi_2740 2276103 - 2276972 + | hypothetical protein Avi_2741 2277591 - 2277965 + | DNA G:T-mismatch repair endonuclease Avi_2742 2277962 - 2279440 + | DNA methylase TERM 2475 2280214 - 2280231 + G 78 -7.7 -4.46212 | overlap 2280230 GGGGTCTGGAGCACT GGCGGTA CGGG TATCGCC TTTTGTGATGCCGCA Avi_2743 2279501 - 2280985 + | hypothetical protein Avi_2744 2280978 - 2283734 + | hypothetical protein Avi_2745 2283731 - 2284714 + | hypothetical protein Avi_2746 2284711 - 2286810 + | hypothetical protein Avi_2747 2286807 - 2287643 + | hypothetical protein Avi_2748 2287616 - 2290348 + | hypothetical protein TERM 2476 2291117 - 2291137 + T 100 -10.5 -4.77757 | opp_overlap 2291106 ATGACGACTAGGGAC TAGCCGATG CGG CATTGGCTA TTTTACTTTTTGCCC Avi_2750 2293045 - 2291198 - | hypothetical protein TERM 2477 2291574 - 2291584 + g 71 -6.8 -4.15106 | overlap 2291570 2291580 TGCTGTGCCCTTGCC GACG AGG CGTC TTTTGACGCTTGCTC tnp 2293347 - 2293637 + | transposase tnp 2293634 - 2294494 + | transposase TERM 2478 2294686 - 2294663 - T 70 -6 -4.18506 | gap 1, opp_overlap 2294673, overlap 2294664 CGAGCTCCAAAACAA TC-CGCCGC GCCGCCT GCGGCGTGA CGTCCAGCGTCTTCG TERM 2479 2295188 - 2295212 + T 100 -14.9 -3.37056 | overlap 2295205 TTTCCGCCGCGCCGC CGCGGCCGGGC CGG GCCGGGTCGCG TTCTCGATCCCTGCT Avi_2756 2296357 - 2295920 - | hypothetical protein Avi_2757 2296588 - 2296908 + | hypothetical protein vgrG 2297488 - 2299812 + | vgrG protein Avi_2759 2299818 - 2300891 + | hypothetical protein Avi_2760 2300884 - 2302506 + | hypothetical protein Avi_2761 2303112 - 2303699 + | hypothetical protein Avi_2762 2303735 - 2304241 + | hypothetical protein Avi_2763 2304771 - 2304307 - | hypothetical protein Avi_2764 2305652 - 2304990 - | transcription antitermination protein Avi_2765 2307105 - 2305639 - | hypothetical protein TERM 2480 2306547 - 2306592 + g 100 -18.3 -3.12999 | opp_overlap 2306539 2306538 2306565, overlap 2306550 TACTAAGGGCCGATT TTCCCGGCGCCGGTAAAACCG GCGA CGGTTCTGCCGGCGACGGCAA TTCAGTCTGCGGTAG TERM 2481 2306550 - 2306574 + g 90 -17.1 -3.28712 | opp_overlap 2306539 2306538 2306565, overlap 2306547 TAAGGGCCGATTTTC CCGGCGCCGGT AAA ACCGGCGACGG TTCTGCCGGCGACGG TERM 2482 2306589 - 2306565 - G 75 -8.4 -4.07568 | opp_overlap 2306550 2306547, overlap 2306539 2306538 CCGGCGCCGGTAAAA CCGGCGACGG TTCTG CCGGCGACGG CAATTCAGTCTGCGG TERM 2483 2307169 - 2307149 - H 70 -10.5 -2.78495 | overlap 2307146 2307144 GGAGGATGAAGATCA TCTGCGCAT ATT ATGCGCAAA CAGATATCATGAAAA Avi_2767 2307238 - 2307813 + | transcriptional regulator TERM 2484 2307849 - 2307860 + F 74 -2.2 -5.1244 | ATCCAAAAATAATTA TGTG TTCG CGCA TTTTTATCTTGCTCA Avi_2770 2308160 - 2308333 + | hypothetical protein intD 2308878 - 2309813 + | phage-related integrase Avi_2772 2311007 - 2310090 - | phenazine antibiotic biosynthesis related protein TERM 2485 2310432 - 2310418 - G 85 -11.4 -4.03234 | GCGCCGTCACAGAAA GGAGCG GCC CGCTCC CAGAGTTGCGGATCG Avi_2774 2311837 - 2311082 - | hypothetical protein TERM 2486 2312066 - 2312032 - R 100 -14.3 -5.58454 | opp_overlap 2312035 2312036, overlap 2312037 TGGATAGCAAAAAAA CAAAACGCCGCGCGC ATGGA GCGCACGGCGCCTTA TTGAACACCAATAGA TERM 2487 2312036 - 2312062 + r 70 -10.7 -2.76696 | opp_overlap 2312032 2312037, overlap 2312035 TAGCAAAAAAACAAA ACGCCGCGCGC ATGGA GCGCACGGCGC CTTATTGAACACCAA TERM 2488 2312061 - 2312037 - R 100 -16.4 -5.57888 | opp_overlap 2312036 2312035, overlap 2312032 AGCAAAAAAACAAAA CGCCGCGCGC ATGGA GCGCACGGCG CCTTATTGAACACCA mcpA 2313770 - 2312094 - | methyl-accepting chemotaxis protein Avi_2776 2314181 - 2315053 + | transcriptional regulator TERM 2489 2315057 - 2315095 + T 100 -21.3 -3.34192 | gap 1, opp_overlap 2315063, overlap 2315063 GAAAGCTTCTGACGC GATAAAGCGCCGCATGTC GGCT GACA-GCGGCGCTTTATC TTCGTTGCGGACCTT TERM 2490 2315063 - 2315089 + T 100 -14.5 -4.2772 | gap 1, opp_overlap 2315063, overlap 2315057 TTCTGACGCGATAAA GCGCCGCATGTC GGCT GACA-GCGGCGC TTTATCTTCGTTGCG TERM 2491 2315089 - 2315063 - T 100 -14.5 -3.89346 | gap 1, opp_overlap 2315057 2315063 TTCTGACGCGATAAA GCGCCGCATGTC GGCT GACA-GCGGCGC TTTATCTTCGTTGCG TERM 2492 2315284 - 2315271 - T 93 -2.4 -5.72616 | ACGCAGACAAAAAAA CTTG GATCGT CAAG AACCGTTCACGCTGA TERM 2493 2315388 - 2315373 - T 100 -3.2 -5.72616 | overlap 2315374 ATGCAGACAAAAAAA GCTTGG AGCG CCAAGA ACATTCAAGGTTAAT TERM 2494 2315387 - 2315374 - T 70 -6.7 -4.01943 | overlap 2315373 TGCAGACAAAAAAAG CTTGG AGCG CCAAG AACATTCAAGGTTAA ilvC 2316422 - 2315403 - | ketol-acid reductoisomerase TERM 2495 2315831 - 2315853 + g 70 -12 -2.82749 | opp_overlap 2315831, overlap 2315830 GACCGCCGCACAGAA CGACCTGCTC GCC GAACAGGTCG GTTTCGCATTCTTCC TERM 2496 2315853 - 2315831 - G 88 -14.2 -3.48593 | opp_overlap 2315831 2315830 GACCGCCGCACAGAA CGACCTGCTC GCC GAACAGGTCG GTTTCGCATTCTTCC Avi_2780 2317118 - 2316480 - | transcriptional regulator TetR family TERM 2497 2316522 - 2316534 + g 71 -10.5 -3.48276 | opp_overlap 2316522 2316524 GTGCAACACAAGAAA GGCGG ACA CCGCC TTGTGTGCGCGGGCG TERM 2498 2316534 - 2316522 - G 88 -10.5 -4.46073 | opp_overlap 2316522, overlap 2316524 GTGCAACACAAGAAA GGCGG ACA CCGCC TTGTGTGCGCGGGCG TERM 2499 2317143 - 2317155 + r 72 -7.7 -3.9461 | opp_overlap 2317140 2317143 CCTTCAATCTAAGTA CCGTA CGG TACGG TTCTTGTTAACGCGC TERM 2500 2317315 - 2317293 - R 77 -8.4 -4.14472 | opp_overlap 2317292 2317301, overlap 2317302 2317305 GGAATACTTTGAAAA CGCAGAAAAG AAG CATTTCCGCG CTTCACTGAAAAGCG TERM 2501 2317339 - 2317302 - R 100 -12.9 -4.54477 | gap 1, opp_overlap 2317292 2317301, overlap 2317293 2317305 TGAAAACGCAGAAAA GAAGCATTTCCGCGCTTC ACT GAAAAGCGGAAATGCT-C AATGATCTCAGGCGA TERM 2502 2317337 - 2317305 - R 100 -15.7 -4.35693 | opp_overlap 2317292 2317301, overlap 2317293 2317302 AAACGCAGAAAAGAA GCATTTCCGCGCTTC ACT GAAAAGCGGAAATGC TCAATGATCTCAGGC Avi_2782 2317926 - 2317417 - | peptide methionine sulfoxide reductase TERM 2503 2318668 - 2318642 - R 100 -15.2 -4.27617 | opp_overlap 2318642 2318639 TATATCGCATGAAAA TGGCCACCCTGA TCC CCAGGATGGCCA TAATATCGTATTTAA TERM 2504 2318642 - 2318668 + r 77 -12.3 -2.7169 | opp_overlap 2318642, overlap 2318639 TATATCGCATGAAAA TGGCCACCCTG ATCCC CAGGATGGCCA TAATATCGTATTTAA Avi_2784 2319037 - 2318741 - | hypothetical protein TERM 2505 2319429 - 2319413 - R 75 -4.3 -4.85177 | overlap 2319414 AAAGCACAGCAAAAA CGCCCAG ATT CCAGGCA TCGAACCAAATAGTT TERM 2506 2319767 - 2319753 - R 72 -8.5 -3.84825 | opp_overlap 2319753 2319746 GTCATTGATACGAAA CGCCG GTCTG CGGCG TTTCGCCTGCTCTCA Avi_2786 2320244 - 2319780 - | transcriptional regulator AsnC family Avi_2787 2320419 - 2321132 + | aspartate racemase TERM 2507 2321138 - 2321165 + F 100 -11.4 -5.33921 | opp_overlap 2321138, overlap 2321134 GATCGCCTGAACGCA TTGACTGCGGTT TGTT GATCGCAGTCAA TTTTTTGCTTGATTT TERM 2508 2321788 - 2321812 + G 93 -12.8 -4.13767 | overlap 2321809 GAAGACGAGATGCAG GCCGTGGCGC AAGCG GCGCTGCGGC TTTTGGACTGAGCCG Avi_2789 2321203 - 2321823 + | transcriptional regulator Avi_2790 2321980 - 2323200 + | MFS permease mcpA 2325141 - 2323273 - | methyl-accepting chemotaxis protein TERM 2509 2323991 - 2324007 + g 72 -6.5 -4.30978 | opp_overlap 2323991 GTCGATGCCGAATGA CGGGC TTCTTCT GCCCG TTTTGATGCATTCGA TERM 2510 2325395 - 2325434 + r 100 -15 -4.18674 | opp_overlap 2325415 2325417, overlap 2325398 GCGGGGTCTTGGCAC CCATAGCGCCGTGCTCAA TATA TGGCGCACGGCGCTATAG TTCTTTATATCTGCG TERM 2511 2325398 - 2325431 + r 95 -15.3 -3.09925 | opp_overlap 2325415 2325417, overlap 2325395 GGGTCTTGGCACCCA TAGCGCCGTGCTCAA TATA TGGCGCACGGCGCTA TAGTTCTTTATATCT Avi_2792 2325916 - 2325506 - | hypothetical protein TERM 2512 2326439 - 2326421 - g 83 -13.8 -3.44051 | CGTCGAGCAGCACAA GGCAGCGG TTG CCGCCGCC GCCAATGCCAAGGTC TERM 2513 2326825 - 2326800 - g 83 -8.3 -4.56597 | gap 1, overlap 2326801 GCCCTGGCCGAAAAA GCCACGGGCAAG CCG CTTGC-CGTGGT CGACATCACCGACCA TERM 2514 2326824 - 2326801 - g 76 -11.8 -3.33744 | gap 1, overlap 2326800 CCCTGGCCGAAAAAG CCACGGGCAAG CCG CTTGC-CGTGG TCGACATCACCGACC Avi_2793 2326155 - 2327030 + | hypothetical protein pdxJ 2327911 - 2327159 - | pyridoxal phosphate biosynthetic protein PdxJ TERM 2515 2328460 - 2328440 - H 72 -8.3 -3.75653 | overlap 2328438 AACGAATTGAAAATA TTTCCCGAT ATT ATCGGGACA AGGGGGACTTATCGC Avi_2795 2328476 - 2329168 + | transcriptional regulator Avi_2796 2330330 - 2329200 - | exodeoxyribonuclease V rhtB 2330972 - 2330379 - | RhtB family transporter TERM 2516 2331235 - 2331224 - g 70 -3.6 -4.56597 | overlap 2331226 GCGGCCGCGGAAAAA GACG AAAT CGCC GCCGTGAATCATGCC Avi_2798 2331122 - 2331967 + | aldo/keto reductase TERM 2517 2332018 - 2331999 - T 71 -9.2 -3.54741 | CATCAGCCCTTCAAA CAGGCCTG CAGG CTGGCCTG GCTAGCCGCCTCACC Avi_2799 2332300 - 2331986 - | hypothetical protein TERM 2518 2332471 - 2332441 - R 100 -21.2 -4.64861 | opp_overlap 2332436 TCTGGGGAAAACAAA GGGCGCATCCGGAT TGA AGCCGGATGCGCCC CCAAATAGTTCAGCA ilvN 2333074 - 2332502 - | acetolactate synthase small subunit ilvI 2334853 - 2333096 - | acetolactate synthase III large subunit TERM 2519 2333826 - 2333837 + g 70 -3.6 -4.56597 | CATTCCGCAGTCTGC GCTG CATC CGGC TTTTTCGCCAGCGCA TERM 2520 2334399 - 2334411 + g 71 -6.9 -4.11216 | TCGACGACGACAGGG CCGGG ACG TCCGG TTTTGGCAATACGGA TERM 2521 2334948 - 2334932 - H 100 -10.1 -5.60993 | opp_overlap 2334932 TTGGCCATAAAAAAA GGCCCCT GGA AGGAGCC TGTCTGTCGCGCATG TERM 2522 2335099 - 2335085 - H 70 -3.5 -4.66833 | gap 1, overlap 2335086 2335094 CGTCAACGGCAAAAA GCCTGC AAAT GC-GGC AGGAGGCGCACATTT TERM 2523 2336201 - 2336187 - g 71 -7 -4.25283 | AGGCCGCGACGAAAA GCCCGC CCT GCGGTC GCTGAAAATGCGGAT TERM 2524 2336834 - 2336815 - g 71 -10.7 -3.54424 | CGCCACCTCCCCAAA GCCAGCG GCAGCA CGCTGGC CCCCTCCGAAGACAT Avi_2804 2335231 - 2337312 + | hypothetical protein Avi_2805 2337316 - 2338452 + | hypothetical protein miaA 2339757 - 2338843 - | tRNA delta(2)-isopentenylpyrophosphate TERM 2525 2339166 - 2339201 + gF 74 -10.4 -3.53012 | CGACCAGTTTTCTGG CCCGTTGCGGATCAAT GATC ATTGGCCCGGAGCGGG TTTGAAAGACGGAAA TERM 2526 2339454 - 2339464 + gF 77 -8.2 -4.13014 | opp_overlap 2339451 TGCCGCCAACGATCA CCGG CAA CCGG TTTTGCGCCTGTAGA serB 2339756 - 2340646 + | phosphoserine phosphatase Avi_2810 2340656 - 2341222 + | acetyltransferase TERM 2527 2341249 - 2341227 - T 70 -10.6 -2.7419 | overlap 2341218 ACATCACTTGAAGTA GCGGATTCAA GCT CTGAACCCGC TGCCATAAACCGCTG htrA 2342871 - 2341285 - | serine protease TERM 2528 2343113 - 2343092 - R 100 -15.1 -4.99638 | opp_overlap 2343092 ATACCCATAGAAAAA GGGGCCGGA ATGA CCCGGCCCC TTTGACTTTAAAGAT TERM 2529 2343092 - 2343113 + r 100 -14.4 -3.84719 | opp_overlap 2343092 ATACCCATAGAAAAA GGGGCCGG AATGAC CCGGCCCC TTTGACTTTAAAGAT hflC 2344053 - 2343136 - | HFLC protein hflK 2345206 - 2344055 - | HFLK protein folA 2345937 - 2345416 - | dihydrofolate reductase TERM 2530 2346026 - 2346002 - R 100 -18.6 -4.73388 | overlap 2346016 AACGTCCATGAAAAA GGCCGCCGTC AACAG GACGGCGGCC CGAAATACATCCCTT Avi_2820 2346443 - 2346051 - | hypothetical protein thyA 2347473 - 2346679 - | thymidylate synthase TERM 2531 2347772 - 2347752 - H 75 -5.4 -4.72272 | opp_overlap 2347752 2347755, overlap 2347754 CGCCTCCACCAAAAA CCGGTC GGTCTTTGT GACCGG CTTTTGATGGGGGCG TERM 2532 2347755 - 2347773 + H 76 -8.1 -4.25104 | opp_overlap 2347752 2347754, overlap 2347752 CTCCACCAAAAACCG GTCGGTC TTTGT GACCGGC TTTTGATGGGGGCGA TERM 2533 2348249 - 2348216 - H 83 -10.3 -4.06687 | overlap 2348220 ATGGCTTATAAACAA CAGACACGCGCATCA TCCG TGATGCACATGACCG GACGCAGAAGAAAGA TERM 2534 2348245 - 2348220 - H 76 -10.5 -3.38699 | overlap 2348216 CTTATAAACAACAGA CACGCGCATCA TCCG TGATGCACATG ACCGGACGCAGAAGA Avi_2824 2348274 - 2348783 + | hypothetical protein TERM 2535 2348885 - 2348875 - g 75 -5.4 -4.68645 | opp_overlap 2348878, overlap 2348877 2348878 CACCGAAAAGGAAAA GATC GCG GATC AGAACCGCGTGAGTT Avi_2825 2348810 - 2349022 + | hypothetical protein Avi_2826 2349130 - 2349372 + | hypothetical protein Avi_2827 2349705 - 2349983 + | hypothetical protein TERM 2536 2350014 - 2350044 + T 100 -14 -5.63645 | overlap 2350017 CTCTATCGAGACGCA GCACCGCTCTGCCA TGA TGGCATAGCGGTAC TTTTTTGTCTTTTCG TERM 2537 2350017 - 2350041 + T 95 -14.3 -3.51847 | overlap 2350014 TATCGAGACGCAGCA CCGCTCTGCCA TGA TGGCATAGCGG TACTTTTTTGTCTTT Avi_2828 2353804 - 2350112 - | hypothetical protein TERM 2538 2352240 - 2352268 + g 78 -14.5 -2.6072 | overlap 2352237 2352236 2352260 AGCAGCGCATCATCG CTGGCATCGCCGG ACA CCAGCGACGCCAG TGCCTTCGTTGCATC TERM 2539 2352681 - 2352703 + g 77 -12 -3.57144 | TCCCGGATCACGGTA TCGCCAGCGA CAA TCGCTGGCAA TTTCAAGCTGGCACG TERM 2540 2353750 - 2353732 - G 77 -8 -4.26903 | overlap 2353744 TCCAGTTGACGAAAA GCGGCGCC AGA AGCGCGGC AAACAGCGCCACCAC Avi_2829 2355289 - 2353880 - | FAD dependent oxidoreductase pstB 2356246 - 2355410 - | phosphate ABC transporter ATP-binding protein TERM 2541 2356075 - 2356100 + g 75 -4 -4.7373 | gap 1, opp_overlap 2356065, overlap 2356074 TAAAGGCGGTGACCG TG-CGATCACG CAGGC CGAGATCGACA TTTTTGATCGCCTGA pstA 2357098 - 2356247 - | phosphate ABC transporter permease protein TERM 2542 2356713 - 2356701 - G 72 -9.1 -3.88787 | GCATAGCCGGAGAAA TGCCG GAA CGGCA CGACCAGCAGCGTAT pstC 2358082 - 2357108 - | phosphate ABC transporter permease protein TERM 2543 2358154 - 2358132 - R 84 -11.2 -3.81137 | opp_overlap 2358132 GTTCAAATATGCAAA CAGCGGGCGA TGA CCGTCCGCTG TTGTTGTAGAAGAAA TERM 2544 2358132 - 2358154 + r 91 -12.7 -3.78934 | opp_overlap 2358132 GTTCAAATATGCAAA CAGCGGGCG ATGAC CGTCCGCTG TTGTTGTAGAAGAAA Avi_2833 2359231 - 2358182 - | periplasmic phosphate-binding protein (PBP) TERM 2545 2359193 - 2359214 + g 70 -2.1 -4.72986 | opp_overlap 2359187 2359188, overlap 2359195 2359196 GACCGAAAAGGCGGC AAGCGCCGC ACCC GTGGCGATC TTTTTCATGAAAGTC TERM 2546 2360221 - 2360178 - g 90 -10.1 -4.57569 | opp_overlap 2360177 2360180 2360209 2360214 2360215, overlap 2360181 CGACGGCTGGAAAAA CAAGGGCCTCGACCCCGCG CAGATC CCCGAGGGCGACGCCCGTG CCTTTGGCAATGGCA TERM 2547 2360218 - 2360181 - g 85 -10.4 -4.40561 | opp_overlap 2360180 2360177 2360209 2360214 2360215, overlap 2360178 CGGCTGGAAAAACAA GGGCCTCGACCCCGCG CAGATC CCCGAGGGCGACGCCC GTGCCTTTGGCAATG TERM 2548 2361578 - 2361538 - g 78 -11 -3.71848 | opp_overlap 2361528 2361576 GCGCTGGAGGAAGAA CGGCGGCTGGCCTATGTC GGCCT GACGCGGGCCAAGCGCCG CTGCCACCTGTGGTT TERM 2549 2361948 - 2361964 + G 75 -4.3 -4.80882 | opp_overlap 2361945, overlap 2361953 TGAACCGTCAAAGTT CTCCGTC GGC GACCGGG TTTTTCATATCAAAT pcrA 2359507 - 2362083 + | DNA helicase II TERM 2550 2362719 - 2362703 - g 70 -2.1 -4.78326 | opp_overlap 2362709, overlap 2362705 CCCTAAAGAAATAAA CGTGCTG TTT CCGCATG GAACGTTGTTTATAT Avi_2837 2362149 - 2363147 + | hypothetical protein Avi_2838 2363285 - 2363551 + | Antitoxin of toxin-antitoxin stability system Avi_2839 2363548 - 2363970 + | nucleic acid-binding protein contains PIN domain TERM 2551 2364410 - 2364382 - T 91 -11 -4.17316 | gap 1, opp_overlap 2364399 2364400, overlap 2364384 ATTGTTCCAAAAGAA GACCCCTCCCGGT CAAA ACCGGCAGGGG-C TGGATGTTTGGAAAG TERM 2552 2364409 - 2364384 - T 100 -14.7 -3.68435 | opp_overlap 2364399 2364400, overlap 2364382 TGTTCCAAAAGAAGA CCCCTCCCGGT CAAA ACCGGCAGGGG CTGGATGTTTGGAAA TERM 2553 2364529 - 2364576 + T 70 -4.7 -4.52873 | opp_overlap 2364540, overlap 2364530 CCTTCGGACCCCCGC TGGGGAGAGGAGGCAACAAGC GTTGCG GCTCCTGCCCTCTTCTCCCCC TTCTTTTTCTGAGGA gcd 2367038 - 2364705 - | glucose dehydrogenase TERM 2554 2367000 - 2366946 - G 95 -13.4 -4.21194 | overlap 2366971 2366973 GGCGATGAGGTAAAA CGGGCTACCGCCGAGCGACAGGAG ATAGCCG CCCCCGCCGCCGAGCGCGAGCCCG ATGACGGCGAAGACG pncA 2367241 - 2367867 + | pyrazinamidase/nicotinamidase panC 2367912 - 2368781 + | pantoate--beta-alanine ligase panB 2368778 - 2369602 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 2555 2369611 - 2369658 + T 85 -12 -3.57144 | gap 1, opp_overlap 2369611 2369613 2369615, overlap 2369614 2369615 ATCGTAACCGCTAAA GAGACGGTAGCGCCTCCCGCC TTCATCT GGCGCGAGGCGCTA-CGGCTA TTTGACGATGACAAG TERM 2556 2369658 - 2369611 - T 85 -12 -3.60971 | gap 1, opp_overlap 2369611 2369614 2369615, overlap 2369613 2369615 ATCGTAACCGCTAAA GAGACGGTAGCGCCTCCCGCC TTCATCT GGCGCGAGGCGCTA-CGGCTA TTTGACGATGACAAG TERM 2557 2369656 - 2369613 - T 100 -14.6 -3.38314 | gap 1, opp_overlap 2369611 2369614 2369615, overlap 2369611 2369615 CGTAACCGCTAAAGA GACGGTAGCGCCTCCCGCC TTCATCT GGCGCGAGGCGCTA-CGGC TATTTGACGATGACA TERM 2558 2369614 - 2369656 + T 100 -14.8 -3.36515 | opp_overlap 2369613 2369611 2369615, overlap 2369611 2369615 GTAACCGCTAAAGAG ACGGTAGCGCCTCCCGCC TTCATCT GGCGCGAGGCGCTACGGC TATTTGACGATGACA TERM 2559 2369615 - 2369655 + T 100 -18.3 -2.61695 | opp_overlap 2369615 2369613 2369611, overlap 2369614 2369611 TAACCGCTAAAGAGA CGGTAGCGCCTCCCGCC TTCATCT GGCGCGAGGCGCTACGG CTATTTGACGATGAC TERM 2560 2369655 - 2369615 - T 100 -18.3 -3.25918 | opp_overlap 2369614 2369611 2369615, overlap 2369613 2369611 TAACCGCTAAAGAGA CGGTAGCGCCTCCCGCC TTCATCT GGCGCGAGGCGCTACGG CTATTTGACGATGAC Avi_2848 2370390 - 2369656 - | hypothetical protein TERM 2561 2370277 - 2370237 - G 86 -14.2 -3.30771 | gap 1, opp_overlap 2370248, overlap 2370222 2370248 GGACATTGGTGACAA CCATGACCA-AAGCTGTCC CTTG GGCCAGCTTCTGGTCATAG GCAGCAAACAGCACG nadB 2372009 - 2370402 - | L-aspartate oxidase TERM 2562 2371482 - 2371500 + g 73 -3.1 -4.84359 | gap 1, opp_overlap 2371451 2371482 CTTCGGGTCGATCAA CACC-GCG CCAA TGCAGGTG TTTTTCTCGGCGTCG TERM 2563 2372211 - 2372194 - R 90 -4.8 -5.31877 | overlap 2372196 ATTTATCAGAAAAAA TACGCC CACCAT GGCGCA AACCTCAAGACGCCC Avi_2851 2372490 - 2372227 - | hypothetical protein TERM 2564 2372681 - 2372729 + H 95 -11.9 -4.41616 | opp_overlap 2372692, overlap 2372684 CCCAAGACATATGCC CATTTAGAGAATTTCCGCGTTTC ATA GAAACGCATAAATACTCTAACTG TTTGTTTCAACACAT TERM 2565 2372684 - 2372726 + H 78 -12.2 -2.88452 | opp_overlap 2372692, overlap 2372681 AAGACATATGCCCAT TTAGAGAATTTCCGCGTTTC ATA GAAACGCATAAATACTCTAA CTGTTTGTTTCAACA Avi_2852 2372799 - 2373509 + | hypothetical protein Avi_2853 2373506 - 2373814 + | hypothetical protein TERM 2566 2374296 - 2374319 + T 100 -11 -5.08824 | opp_overlap 2374296 2374286 ACGAACATGCCCAAA GCGAAGATGC CTCT GCATCCTCGC TTTTTTACATACAGA TERM 2567 2374319 - 2374296 - T 93 -13.2 -3.61328 | opp_overlap 2374296, overlap 2374286 ACGAACATGCCCAAA GCGAAGATGC CTCT GCATCCTCGC TTTTTTACATACAGA TERM 2568 2374398 - 2374425 + T 72 -10 -3.28712 | opp_overlap 2374395 2374394, overlap 2374399 TTGCTGCATAATTTT CTCTTTAAACCG ATCT CGGTTTAAAGAA TTATGCAGCAGCGGA TERM 2569 2374399 - 2374424 + T 81 -13.5 -2.57132 | opp_overlap 2374395 2374394, overlap 2374398 TGCTGCATAATTTTC TCTTTAAACCG ATCT CGGTTTAAAGA ATTATGCAGCAGCGG Avi_2855 2376273 - 2374426 - | aminopeptidase P TERM 2570 2376544 - 2376529 - R 74 -3.2 -4.89521 | overlap 2376530 ACATGCTAAACAAAA CCGAAG AGAC CTCCGA TGACCAGCCCGATCC TERM 2571 2376878 - 2376859 - R 100 -10.7 -4.87665 | opp_overlap 2376859 CCTGATCGAGAAAAA GGCGGCA TGGCGG TGCCGCC TTTTTTGTTTTTTGT TERM 2572 2376859 - 2376878 + r 100 -11.4 -6.07374 | opp_overlap 2376859 CCTGATCGAGAAAAA GGCGGCAT GGCG GTGCCGCC TTTTTTGTTTTTTGT prmA 2377899 - 2377027 - | ribosomal protein L11 methyltransferase Avi_2858 2378618 - 2378019 - | cytochrome c oxidase assembly factor transmembrane protein TERM 2573 2380858 - 2380828 - g 74 -7.5 -4.2828 | overlap 2380853 GGTCACGCAGCAAAA TGCCGCCATGGTC GAAGA AACCAATGCGGCA AGTCATACGCTTGCC mcpG 2379122 - 2381128 + | methyl-accepting chemotaxis protein cheW 2381132 - 2381596 + | chemotaxis protein TERM 2574 2381649 - 2381699 + F 81 -13.4 -2.81559 | opp_overlap 2381650 2381653, overlap 2381652 2381657 TGAAAAGTCGAAAAA ACAAGAAACCGCCGGTTCGG ACGTGATGGCA CCGAACCGGTGGTTTCGTGC GTTTAAAATTATGAT TERM 2575 2381698 - 2381650 - f 100 -14.7 -5.15117 | gap 1, opp_overlap 2381649 2381652 2381657, overlap 2381653 GAAAAGTCGAAAAAA CAAGAAACCGCCGGTTCGG-AC GTGATG GCACCGAACCGGTGGTTTCGTG CGTTTAAAATTATGA TERM 2576 2381652 - 2381696 + F 84 -13.7 -2.66593 | opp_overlap 2381650 2381653, overlap 2381649 2381657 AAAGTCGAAAAAACA AGAAACCGCCGGTTCGG ACGTGATGGCA CCGAACCGGTGGTTTCG TGCGTTTAAAATTAT TERM 2577 2381695 - 2381653 - f 100 -15 -4.63993 | gap 1, opp_overlap 2381652 2381649 2381657, overlap 2381650 AAGTCGAAAAAACAA GAAACCGCCGGTTCGG-AC GTGATG GCACCGAACCGGTGGTTTC GTGCGTTTAAAATTA TERM 2578 2381657 - 2381691 + F 91 -12.2 -3.82097 | opp_overlap 2381653 2381650, overlap 2381652 2381649 CGAAAAAACAAGAAA CCGCCGGTTCGG ACGTGATGGCA CCGAACCGGTGG TTTCGTGCGTTTAAA TERM 2579 2382233 - 2382215 - g 71 -10.2 -3.53444 | opp_overlap 2382214, overlap 2382216 TCATTTGGGTGCAAA CCGCCGCC AAT GGCGGCAA GATCGTTTACGTCAA Avi_2863 2381908 - 2382252 + | hypothetical protein TERM 2580 2382433 - 2382385 - T 100 -22.7 -4.80959 | overlap 2382388 GAACCGAGAACAAAA CAATCGAGAGTGTGTCCGGTTCA ATC TGAACTGGACACACTCTCGAATA TAGAAGTCCACCCCG TERM 2581 2382430 - 2382388 - T 100 -26.6 -4.49377 | overlap 2382385 CCGAGAACAAAACAA TCGAGAGTGTGTCCGGTTCA ATC TGAACTGGACACACTCTCGA ATATAGAAGTCCACC TERM 2582 2382681 - 2382628 - T 78 -8.1 -4.31835 | gap 1, opp_overlap 2382644 AAGCGTTACAACAAA CCCATGACGCTG-CAACTCCCCAGCG CCC CGCTGGGGATTAATCTGCACCATAAG GGCGCACCAATAAAG TERM 2583 2382644 - 2382664 + T 100 -16.9 -3.2614 | opp_overlap 2382628 CCATGACGCTGCAAC TCCCCAGCG CCC CGCTGGGGA TTAATCTGCACCATA TERM 2584 2382797 - 2382774 - T 100 -13.2 -3.72576 | opp_overlap 2382773 2382772 TTGGCGTTCATCAAA GCAAGCCCTA CAAT CAGGGCTTGC CATTCTTCCAAGTTA Avi_2864 2383275 - 2382787 - | hypothetical protein Avi_2865 2383982 - 2383359 - | DNA polymerase III epsilon subunit-like 3-5 exonuclease Avi_2868 2384035 - 2384676 + | hypothetical protein mcpG 2386561 - 2384732 - | methyl-accepting chemotaxis protein Avi_2870 2387083 - 2387565 + | acetyltransferase TERM 2585 2388455 - 2388440 - g 70 -4.6 -4.48987 | opp_overlap 2388451, overlap 2388452 2388453 TGCCGACAAGGAAAA CGCGAT CATC AACGCG CTGCGCTTTTATGAA TERM 2586 2389618 - 2389587 - g 87 -3.7 -5.4505 | gap 2, overlap 2389588 2389592 TCCTTCAAGAAAAAA TCCAATGCCGCTGGC GACA GCC-GCAGC-TGGGA CAAGCCCAAGGCCGA deaD 2387742 - 2389763 + | cold-shock dead-box protein A TERM 2587 2389778 - 2389835 + F 100 -5.5 -6.06723 | opp_overlap 2389787 2389790, overlap 2389779 2389780 2389790 ATTATTACCCGCCAT TTTGATAGATCAGCAGCCCGGAAATCA CACC TGATTTCCGGGCTGCTGCGTTGAAGGC TTTTTTTTTCGAGAA TERM 2588 2389779 - 2389834 + F 82 -9 -4.22949 | opp_overlap 2389787 2389790, overlap 2389778 2389780 2389790 TTATTACCCGCCATT TTGATAGATCAGCAGCCCGGAAATCA CACC TGATTTCCGGGCTGCTGCGTTGAAGG CTTTTTTTTTCGAGA TERM 2589 2389826 - 2389787 - f 100 -23.8 -2.88544 | opp_overlap 2389780 2389779 2389778 2389790, overlap 2389790 CGCCATTTTGATAGA TCAGCAGCCCGGAAATCA CACC TGATTTCCGGGCTGCTGC GTTGAAGGCTTTTTT TERM 2590 2389790 - 2389823 + F 100 -24.1 -2.53392 | opp_overlap 2389787 2389790, overlap 2389780 2389779 2389778 CATTTTGATAGATCA GCAGCCCGGAAATCA CACC TGATTTCCGGGCTGC TGCGTTGAAGGCTTT TERM 2591 2389823 - 2389790 - f 100 -24.1 -2.69468 | opp_overlap 2389790 2389780 2389779 2389778, overlap 2389787 CATTTTGATAGATCA GCAGCCCGGAAATCA CACC TGATTTCCGGGCTGC TGCGTTGAAGGCTTT TERM 2592 2391294 - 2391312 + G 73 -3 -4.81249 | opp_overlap 2391279 2391280 2391294, overlap 2391295 CGGCTGGCCGGAAAG CCGAACAG GCC CAGTTCGA TTTTTGCATTTCCAC Avi_2873 2390036 - 2391976 + | amine oxidase flavin-containing TERM 2593 2392012 - 2391982 - f 76 -12.4 -2.60244 | opp_overlap 2391983 2391984, overlap 2391978 CTTCCAATGAACCGA TCGCCGCCGGGACC TGT GTTCCCGGCGGCCT TTCAAACAACGGTTC TERM 2594 2391983 - 2392011 + F 100 -15.9 -3.53343 | opp_overlap 2391982 2391978, overlap 2391984 TTCCAATGAACCGAT CGCCGCCGGGACC TGT GTTCCCGGCGGCC TTTCAAACAACGGTT TERM 2595 2391984 - 2392010 + F 100 -19.4 -2.71791 | opp_overlap 2391982 2391978, overlap 2391983 TCCAATGAACCGATC GCCGCCGGGACC TGT GTTCCCGGCGGC CTTTCAAACAACGGT TERM 2596 2392105 - 2392091 - f 78 -8.6 -4.19678 | GCACATGCCAATAAA GTTGCA TCA TGCAAC CAATATGGAACTGGT Avi_2874 2392121 - 2393062 + | hypothetical protein TERM 2597 2393161 - 2393122 - T 100 -8.8 -5.85244 | gap 1, opp_overlap 2393127, overlap 2393123 2393125 2393127 AACGAAAACAAAAAA CGAGAGTCTGTCAGGTT TCATTTG AACCTGACAGACTTT-G TATACTGGCAGAGCA TERM 2598 2393161 - 2393123 - T 81 -9 -4.07486 | opp_overlap 2393127, overlap 2393122 2393125 2393127 ACGAAAACAAAAAAC GAGAGTCTGTCAGGTT TCATTTG AACCTGACAGACTTTG TATACTGGCAGAGCA TERM 2599 2393159 - 2393125 - T 85 -11.6 -3.59406 | opp_overlap 2393127, overlap 2393122 2393123 2393127 GAAAACAAAAAACGA GAGTCTGTCAGGTT TCATTTG AACCTGACAGACTT TGTATACTGGCAGAG TERM 2600 2393157 - 2393127 - T 95 -14.2 -3.32223 | opp_overlap 2393127, overlap 2393125 2393122 2393123 AAACAAAAAACGAGA GTCTGTCAGGTT TCATTTG AACCTGACAGAC TTTGTATACTGGCAG TERM 2601 2393127 - 2393157 + T 100 -14.9 -4.08706 | opp_overlap 2393125 2393122 2393123 2393127 AAACAAAAAACGAGA GTCTGTCAGGTTT CATTT GAACCTGACAGAC TTTGTATACTGGCAG Avi_2875 2393573 - 2393235 - | hypothetical protein TERM 2602 2393518 - 2393491 - G 70 -4 -4.70583 | overlap 2393495 TTGACGAACAGAAAA CGATGGCTGCCG GAAG CAGCAGAAACCG TCGAGGCCATAGCCA Avi_2876 2395981 - 2393822 - | DNA ligase Avi_2877 2396876 - 2396043 - | hypothetical protein TERM 2603 2396289 - 2396254 - G 71 -8.2 -4.09511 | gap 1 AACAGCGGCTCAAAA CGGGTGA-GCGCCGAGC CCG GCCCGACACGCCACTCG TTGAAATCCCCCATC TERM 2604 2396389 - 2396353 - G 78 -11.6 -3.78953 | gap 1 AGCTTCAGGATGAAA TCCGCCTGCTGACGCCG CGCC CAGCG-CAACAGGCCGA GATGGGCAGCAATGA cls 2398363 - 2396915 - | cardiolipin synthase TERM 2605 2397706 - 2397656 - G 78 -6.1 -4.57073 | CATGCCGCCGAAAAA GCCGA-CCGCGCCATCCACCACCAG AAT CTTGCGATGGGTG-CGCAGATTGGC ATAGGGCAGCCTCAA TERM 2606 2398406 - 2398389 - R 95 -10.5 -4.4768 | TATGAAGAGAATAAA GCCGCGC GGAC GCGCAGC ATGCGGCAAAACGAA recN 2400187 - 2398514 - | DNA repair protein RecN TERM 2607 2398601 - 2398630 + g 73 -12.1 -3.06679 | overlap 2398622 2398624 CCGGGCGATTTCCTC GCGGCGGTGGTCG GGGC CGATCATCGCCAC TTGGGTGGCGATCTT TERM 2608 2398622 - 2398643 + g 82 -8.7 -4.4715 | overlap 2398601 2398624 GTGGTCGGGGCCGAT CATCGCCAC TTGG GTGGCGATC TTTTCTGCGTTGCCG TERM 2609 2398624 - 2398641 + g 81 -11.3 -3.84304 | overlap 2398601 2398622 GGTCGGGGCCGATCA TCGCCAC TTGG GTGGCGA TCTTTTCTGCGTTGC TERM 2610 2399920 - 2399939 + g 71 -7.8 -4.07885 | GACGGAAAATCAGGT CGCCATCG TCAT CGATGCCG TTTTCGCGCAGCATG Avi_2880 2401103 - 2400234 - | hypothetical protein TERM 2611 2401394 - 2401413 + r 86 -10.6 -3.92178 | opp_overlap 2401395, overlap 2401395 ACCGAACGCACGAAA ACGGCGCC TACC GGCGCCGC TTTAATTCAACTGAT TERM 2612 2401395 - 2401412 + r 86 -14.1 -2.94825 | opp_overlap 2401395, overlap 2401394 CCGAACGCACGAAAA CGGCGCC TACC GGCGCCG CTTTAATTCAACTGA TERM 2613 2401412 - 2401395 - R 100 -14.1 -4.30978 | opp_overlap 2401395 2401394 CCGAACGCACGAAAA CGGCGCC TACC GGCGCCG CTTTAATTCAACTGA lpxC 2402387 - 2401482 - | UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase TERM 2614 2402726 - 2402716 - R 72 -5.4 -4.44667 | TGTCTCAACAAGAAA TCAG CAT CTGA AACAGCCATTATAAA TERM 2615 2402775 - 2402744 - R 100 -16 -4.9218 | opp_overlap 2402750, overlap 2402746 CAGCCATTATAAAAA CAGAAACCCGGATC GTTC GATCCGGGTTTCCA AAACGCATCTCTGGC TERM 2616 2402773 - 2402746 - R 100 -18.6 -4.08042 | opp_overlap 2402750, overlap 2402744 GCCATTATAAAAACA GAAACCCGGATC GTTC GATCCGGGTTTC CAAAACGCATCTCTG TERM 2617 2402750 - 2402769 + r 95 -13.6 -3.53224 | opp_overlap 2402746 2402744 TTATAAAAACAGAAA CCCGGATC GTTC GATCCGGG TTTCCAAAACGCATC TERM 2618 2402838 - 2402797 - R 90 -14.5 -2.87211 | gap 1, opp_overlap 2402797 2402798 2402799, overlap 2402780 ATCTCTGGCGAGAGA CTCAGGGGCTGGCAGGTTCA AAT TGAACCCGCCAGACACTG-G ATTTTTGTATCGTTT TERM 2619 2402797 - 2402839 + r 100 -11.2 -5.06585 | opp_overlap 2402780 2402797, overlap 2402798 2402799 ATCTCTGGCGAGAGA CTCAGGGGCTGGCAGGTTCA AAT TGAACCCGCCAGACACTGGA TTTTTGTATCGTTTG TERM 2620 2402798 - 2402838 + r 100 -14.7 -3.62324 | opp_overlap 2402780 2402797, overlap 2402797 2402799 TCTCTGGCGAGAGAC TCAGGGGCTGGCAGGTTCA AAT TGAACCCGCCAGACACTGG ATTTTTGTATCGTTT TERM 2621 2402799 - 2402837 + r 100 -16 -2.75768 | opp_overlap 2402797, overlap 2402798 2402797 CTCTGGCGAGAGACT CAGGGGCTGGCAGGTTCA AAT TGAACCCGCCAGACACTG GATTTTTGTATCGTT ftsZ2 2404756 - 2402897 - | cell division protein ftsA 2406139 - 2404814 - | cell division protein ftsQ 2407065 - 2406136 - | cell division protein ddl 2407964 - 2407062 - | D-alanine:D-alanine ligase TERM 2622 2407260 - 2407216 - G 93 -9.1 -4.84359 | opp_overlap 2407247 CCATCTTCAGAAAAA CGGTCGTCGTAACGGAAGTCG GAC CGACTGACGCCACGGCACCCG ATCGCGTTATGGGCC TERM 2623 2408044 - 2408062 + H 77 -11.6 -3.15544 | CTTTGCGCCCGACTT GCGGCGCG AAT CGCGCCGG TTCATGCACCTGACA TERM 2624 2408126 - 2408140 + H 71 -2.9 -4.8543 | ACAGGTGTTAACGAG CAAAA ATTAC TTTTG TTTTTCTGGGAGTTA TERM 2625 2408261 - 2408238 - H 80 -5.2 -5.02074 | overlap 2408241 CGATGGGTGAAAAAA GAAGACAGCC TACC GGCTACCGTC AGCGACATGAGGGCC TERM 2626 2408258 - 2408241 - H 75 -5.5 -4.61482 | overlap 2408238 TGGGTGAAAAAAGAA GACAGCC TACC GGCTACC GTCAGCGACATGAGG TERM 2627 2408329 - 2408290 - H 79 -2.3 -5.29445 | gap 3 CCGGAACAACAAAAA GCCGTGCTG---AGGGAC AGACGAG ATCCCTGTGCAGCACGGC TTCGAATTCATCGAT TERM 2628 2409007 - 2408991 - H 70 -4.3 -4.50058 | overlap 2408993 2408994 GATTGACAAGGAAAA CACCGCT TAT AGCGCCG AAATAAGCAGAACCA Avi_2888 2409142 - 2410446 + | ABC transporter membrane spanning protein (sugar) TERM 2629 2410538 - 2410512 - T 100 -22.4 -5.64873 | opp_overlap 2410512 CTGAACAATAAAAAA CGCCGCCAAGTG ATT CACTTGGCGGCG TTTTTTATTAATTAG TERM 2630 2410512 - 2410538 + T 100 -22.4 -5.5604 | opp_overlap 2410512 CTGAACAATAAAAAA CGCCGCCAAGTG ATT CACTTGGCGGCG TTTTTTATTAATTAG murB 2411537 - 2410563 - | UDP-N-acetylenolpyruvoylglucosamine reductase murC 2412949 - 2411534 - | UDP-N-acetylmuramate-alanine ligase murG 2414067 - 2412946 - | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 2631 2414045 - 2414021 - G 100 -12.8 -4.42806 | overlap 2414023 TCAGCCGGAAACAAA TGGCCGCCGG TTCCC CCGGCGGCAA GAAGAATGAGACCCT TERM 2632 2414043 - 2414023 - G 81 -15.4 -2.54639 | overlap 2414021 AGCCGGAAACAAATG GCCGCCGG TTCCC CCGGCGGC AAGAAGAATGAGACC ftsW 2415240 - 2414086 - | cell division protein murD 2416657 - 2415242 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase mraY 2417765 - 2416665 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 2419251 - 2417818 - | UDP-MurNAc-pentapeptide synthetase TERM 2633 2418358 - 2418370 + g 76 -6.9 -4.41548 | opp_overlap 2418345, overlap 2418342 ACGGGCAGCGCCCAG CGCCG CCA TGGCG TTTTCTGCGATATGG murE 2420708 - 2419248 - | UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase TERM 2634 2419317 - 2419299 - G 74 -8.1 -4.13767 | gap 1 GGCGTGATCGGAAAA CGGCAGCG TCTG CGC-GCCG ACAATCTGGCCCTCT TERM 2635 2420692 - 2420680 - G 78 -9.1 -4.13014 | opp_overlap 2420687 GTCAGATCCCCAAAA TCGCC GCT GGCGA GATCTCGCAATTTCA Avi_2897 2422524 - 2420773 - | penicillin binding protein 2 TERM 2636 2422024 - 2422044 + g 73 -11.1 -3.34895 | opp_overlap 2422012 2422011 2422007 AATGCCGGGAATGCC CAGCGCCAG GAT CTGGCTCTG TTGCTTGGGCGTCAA Avi_2898 2422940 - 2422521 - | hypothetical protein mraW 2423969 - 2422944 - | S-adenosyl-methyltransferase MraW TERM 2637 2423980 - 2424030 + r 72 -9.8 -3.28269 | opp_overlap 2423992, overlap 2423984 ACCATTCCGCTTCTC CGCCTTAGACTATCTCCCTTTTTC TTT GAAAAAGGGAGATAGTCCACATCA TTGCATTTGCGCATT TERM 2638 2423984 - 2424027 + r 100 -16.4 -2.81888 | gap 1, opp_overlap 2423992, overlap 2423980 TTCCGCTTCTCCGCC T-TAGACTATCTCCCTTTTTC TTT GAAAAAGGGAGATAGTCCACA TCATTGCATTTGCGC TERM 2639 2424018 - 2423992 - R 100 -16.8 -2.62184 | opp_overlap 2423984 2423980 CTCCGCCTTAGACTA TCTCCCTTTTTC TTT GAAAAAGGGAGA TAGTCCACATCATTG Avi_2899 2424526 - 2424086 - | hypothetical protein Avi_2901 2426600 - 2425407 - | sarcosine oxidase TERM 2640 2426718 - 2426660 - R 78 -12.2 -2.88249 | gap 4, opp_overlap 2426644 2426680 2426684, overlap 2426680 2426683 2426693 CAGACTTGCCACATA GTTTGATTGATCTGACGCAAGAACCGGCAG AAA CTGC-GGTTCTTGCGT--GATCG-TCAAAC CCGATCACCCCACAA TERM 2641 2426749 - 2426759 + r 72 -6.8 -4.23434 | GATCGGCAGAGGGGA CGCT GTC AGCG TTTTCAGCTATTTTC slt 2427356 - 2426763 - | soluble lytic transglycosylase TERM 2642 2427377 - 2427364 - R 74 -2.3 -5.14563 | GTTTTCATGAAAAAA GTCAG TCTC CAGAC AAAGGGGCGGACACG TERM 2643 2427675 - 2427663 - R 70 -10.5 -2.75963 | overlap 2427662 ATCCTCAGCTGAAAC GCGGC AAC GCCGC CAGCAGACGATGCAG Avi_2906 2428410 - 2427652 - | N-acetylmuramoyl-L-alanine amidase djlA 2429144 - 2428407 - | molecular chaperone DnaJ family TERM 2644 2429012 - 2428993 - G 83 -7.8 -4.66163 | opp_overlap 2428997 2429011 ATCGCCACGGAAAAA GACACGCG CCTG CGCGTTTC CGGATCGCCCTCAAA pfp 2429465 - 2430679 + | pyrophosphate--fructose-6-phosphate 1-phosphotransferase TERM 2645 2430802 - 2430841 + F 83 -10 -4.0371 | gap 1, overlap 2430804 2430806 2430807 2430809 TGACAGACTATTTAT TGTGACAGCGCCG-GTGCC AAG GGCATGCGGCGCTGCTATG TTTATATCGGGAGTG TERM 2646 2430804 - 2430839 + F 88 -12.6 -3.61232 | gap 1, overlap 2430802 2430806 2430807 2430809 ACAGACTATTTATTG TGACAGCGCCG-GTGCC AAG GGCATGCGGCGCTGCTA TGTTTATATCGGGAG TERM 2647 2430806 - 2430837 + F 89 -13 -3.38294 | gap 1, overlap 2430804 2430802 2430807 2430809 AGACTATTTATTGTG ACAGCGCCG-GTGCC AAG GGCATGCGGCGCTGC TATGTTTATATCGGG TERM 2648 2430807 - 2430836 + F 100 -16.5 -2.62495 | gap 1, overlap 2430806 2430804 2430802 2430809 GACTATTTATTGTGA CAGCGCCG-GTGCC AAG GGCATGCGGCGCTG CTATGTTTATATCGG TERM 2649 2430809 - 2430834 + F 82 -13.3 -2.8459 | gap 1, overlap 2430807 2430806 2430804 2430802 CTATTTATTGTGACA GCGCCG-GTGCC AAG GGCATGCGGCGC TGCTATGTTTATATC TERM 2650 2431348 - 2431364 + G 85 -10.1 -4.38712 | ATCACATCGGGCTTT TCGCCGT TCA GCGGCGA TTTTCTGACCATGGA Avi_2910 2430919 - 2431554 + | hypothetical protein TERM 2651 2431759 - 2431784 + F 88 -12.5 -3.64703 | CCGATGTTAATAGTT CGTGCGTTGCC TGTG GGCAGCGCTCG TTTCAATAGCCGACG Avi_2912 2431809 - 2432915 + | lytic murein transglycosylase Avi_2913 2434349 - 2432970 - | Hydrolatse transmembrane protein TERM 2652 2434546 - 2434529 - H 77 -7 -4.58663 | ATGACGGTTGAAAAA CCATGG GATTTT CCATGG GCGCACAGCCCAGCC Avi_2914 2434642 - 2435889 + | hypothetical protein Avi_2916 2435952 - 2436572 + | O-methyltransferase lyc 2436794 - 2437597 + | glycosyl hydrolase/lysozyme TERM 2653 2437764 - 2437776 + G 71 -10.5 -3.53012 | GTTGAGCGGCCTTAT GGCCG GCA CGGCC TTTGCCCAGGCACCG TERM 2654 2437799 - 2437814 + G 70 -4.6 -4.42653 | overlap 2437789 AGGCACCGCAATGCG GCGGTG ATCT CAGCGC TTTTCTGGCTGGCGT mltB 2437714 - 2438904 + | lytic murein transglycosylase TERM 2655 2438932 - 2438957 + F 100 -19.1 -4.77036 | ATTCCGGTTGTTTTA GCCGCGCATTC TCAT GAATGCGCGGC TTTTTCATGCTCGAC Avi_2922 2439106 - 2439672 + | hydrolase TERM 2656 2439800 - 2439771 - g 73 -12.2 -3.05816 | GCAGGGCCGATGGAA GTCCTGCGCAAG GCCAAT CTTGAGCAGGAC AGTGTGCGATTCACG Avi_2923 2439678 - 2440679 + | transcriptional regulator AraC family TERM 2657 2441072 - 2441101 + T 100 -16.4 -5.06414 | opp_overlap 2441073, overlap 2441073 TCAACGATGCTAAAA ACGCCGTGCGCC CTCGAT GGCGCACGGCGG TTTTTATTGAGCGAG TERM 2658 2441100 - 2441073 - T 100 -19.9 -4.64598 | opp_overlap 2441072 2441073 CAACGATGCTAAAAA CGCCGTGCGCC CTCGAT GGCGCACGGCG GTTTTTATTGAGCGA TERM 2659 2441073 - 2441100 + T 100 -19.9 -3.63367 | opp_overlap 2441073, overlap 2441072 CAACGATGCTAAAAA CGCCGTGCGCC CTCGAT GGCGCACGGCG GTTTTTATTGAGCGA metF 2442176 - 2441259 - | methylenetetrahydrofolate reductase Avi_2926 2443201 - 2442176 - | transcriptional regulator ArsR family TERM 2660 2443319 - 2443292 - R 100 -14.8 -5.1963 | opp_overlap 2443293, overlap 2443293 GTGAATCAACAAAAA TCCGCCGGTGAC GAGT GCCACCGGCGGT ATTGAAAGCCCTGCG TERM 2661 2443293 - 2443318 + r 100 -16.1 -3.02144 | opp_overlap 2443293 2443292 TGAATCAACAAAAAT CCGCCGGTGAC GAGT GCCACCGGCGG TATTGAAAGCCCTGC TERM 2662 2443318 - 2443293 - R 100 -18.3 -3.70694 | opp_overlap 2443293, overlap 2443292 TGAATCAACAAAAAT CCGCCGGTGAC GAGT GCCACCGGCGG TATTGAAAGCCCTGC mcpC 2445596 - 2443404 - | methyl-accepting chemotaxis protein TERM 2663 2444374 - 2444320 - G 72 -9.1 -3.83205 | opp_overlap 2444368 2444369 ATTTCGCAGAGCAAA TCACCCGCTGCCAGCTG-GCGCAGCCC TGA GGCCAGGGCACCGGTGGC-GCGGGCGA GACGCTCATTTGCCT TERM 2664 2445798 - 2445772 - R 74 -7.4 -4.03234 | TTTGCGTCATATAAA TCGAAAAATGCC CTT GAGATTTTTCGA GCACAATTCTCTCAA TERM 2665 2445875 - 2445858 - R 90 -4.7 -5.45652 | opp_overlap 2445858 2445864 ACCTTGAACAAAAAA GCCCCAC CTGA GCGGTGC AGGCTTTTCTGGGTT mcpC 2448279 - 2445901 - | methyl-accepting chemotaxis protein TERM 2666 2448395 - 2448364 - R 100 -15.3 -3.93004 | opp_overlap 2448367, overlap 2448367 ACAATATCGGACAAA CAACCCTGAGATG AAAAAA CACCTCAGGGTTG TCAATAATCACAATT TERM 2667 2448392 - 2448367 - R 88 -11.2 -4.08279 | opp_overlap 2448367, overlap 2448364 ATATCGGACAAACAA CCCTGAGATG AAAAAA CACCTCAGGG TTGTCAATAATCACA chvD 2450058 - 2448409 - | ABC transporter nucleotide binding/ATPase protein Avi_2930 2450927 - 2450205 - | Ribonuclease protein TERM 2668 2450835 - 2450812 - G 72 -4.4 -4.56597 | opp_overlap 2450825, overlap 2450813 2450828 TTGGTTTCGCAAAAA CCCGGCTGCC AACT GACGGCCAGA ATGCTAGTCGTCCTG Avi_2931 2451115 - 2452065 + | hypothetical protein TERM 2669 2452141 - 2452127 - g 77 -7.8 -4.34345 | GACAGACGATCAAAA GCGAGA CAA TCCCGC ATGTCCACTCCACCG Avi_2932 2452085 - 2453113 + | permease iivG 2453144 - 2454796 + | acetolactate synthase large subunit Avi_2934 2455333 - 2454857 - | Transcriptional regulator protein TERM 2670 2455509 - 2455495 - g 82 -10 -4.14739 | TTAGCGATGGGAAAA GCTGTC GAT GACAGC GGCCTCGAAAAAGAA Avi_2935 2455429 - 2455869 + | hypothetical protein TERM 2671 2455906 - 2455883 - T 100 -14.6 -4.15881 | opp_overlap 2455899, overlap 2455886 AAATATGACAAACAA GAAGGCCGGC TTCC ACCGGCCTTC AAGGTTAAAGGCAGT TERM 2672 2455903 - 2455886 - T 91 -10.5 -4.17309 | opp_overlap 2455899, overlap 2455883 TATGACAAACAAGAA GGCCGGC TTCC ACCGGCC TTCAAGGTTAAAGGC Avi_2936 2456266 - 2455925 - | hypothetical protein TERM 2673 2456321 - 2456300 - R 100 -13 -4.51363 | opp_overlap 2456296 TATGAAACACGAAAA CGCTGCGG GTTTTG CCGCAGCG TGGGTAGGTTTTTTG Avi_2938 2456677 - 2456342 - | hypothetical protein TERM 2674 2456715 - 2456697 - R 70 -6.7 -4.08216 | GCATCCTTTTCAAAA CCGGCTT AATCG AAACCGG CCAAACATTTACGAT Avi_2941 2457611 - 2456781 - | hypothetical protein Avi_2943 2458074 - 2459345 + | hypothetical protein TERM 2675 2459338 - 2459355 + T 77 -8.5 -4.08216 | opp_overlap 2459338 TCACTGTGGAATTCA TTGACTG AGTG CAGTCAA TTTTAAGCACAATAA TERM 2676 2459373 - 2459402 + T 83 -6.4 -5.00642 | gap 2, opp_overlap 2459368 2459373 TTAAGCACAATAAAA CGCCCCGCCGACGG TTGT CC-TAG-CGGGGCG TTTTTATGTGGCTTC TERM 2677 2459402 - 2459373 - T 93 -8.6 -4.84492 | gap 2, opp_overlap 2459373, overlap 2459368 TTAAGCACAATAAAA CGCCCCGCC--GAC GGTT GTCCTAGCGGGGCG TTTTTATGTGGCTTC Avi_2944 2460149 - 2459433 - | ParA chromosome partitioning protein Avi_2945 2461471 - 2460326 - | dehydrogenase TERM 2678 2461691 - 2461673 - R 77 -6.6 -4.49644 | opp_overlap 2461673, overlap 2461674 2461675 ATCAAAAAGGGAAAA TCGGTGGC TTC GCCACCAC AATTTCAAATTTCAA TERM 2679 2461690 - 2461674 - R 72 -10.1 -3.28159 | opp_overlap 2461673, overlap 2461673 2461675 TCAAAAAGGGAAAAT CGGTGGC TTC GCCACCA CAATTTCAAATTTCA TERM 2680 2461689 - 2461675 - R 73 -11.4 -2.55811 | opp_overlap 2461673, overlap 2461674 2461673 CAAAAAGGGAAAATC GGTGGC TTC GCCACC ACAATTTCAAATTTC TERM 2681 2461767 - 2461740 - R 70 -6.9 -4.0641 | opp_overlap 2461740 2461742, overlap 2461742 TTTCATTTAGATAAA CAGAGGCCGCC GATCCG GGCGACCCCTC TTCGTATCAGGTCAG TERM 2682 2461765 - 2461742 - R 73 -9.5 -3.6269 | opp_overlap 2461740 2461742, overlap 2461740 TCATTTAGATAAACA GAGGCCGCC GATCCG GGCGACCCC TCTTCGTATCAGGTC Avi_2946 2463359 - 2461788 - | Amino acid permease protein TERM 2683 2463396 - 2463376 - H 72 -11.1 -3.06302 | opp_overlap 2463394 ATGACCCCCAGTTAA GCCGAGGCA AAA CACCTCGGC AGCCTCTGCCTTTCG TERM 2684 2463394 - 2463406 + H 76 -9.1 -3.84719 | opp_overlap 2463376 GAGGCAAAACACCTC GGCAG CCT CTGCC TTTCGGTTTGCCGGT TERM 2685 2463943 - 2463930 - H 70 -5.9 -4.15044 | TCTTTGCGCAATAAA CCGGC AAAG ACCGG AGGGGAACAATCGAC Avi_2948 2464230 - 2465330 + | ABC transporter substrate binding protein TERM 2686 2465362 - 2465395 + F 71 -10.9 -2.90496 | overlap 2465362 AAATTTCACTCCACC TTTGCGCAGGCCGGT TTTT ACCGGCCTGCGTGCC TAATTTGAAGGGAAA Avi_2949 2465418 - 2466410 + | ABC transporter membrane spanning protein Avi_2950 2466407 - 2467258 + | ABC transporter TERM 2687 2468064 - 2468043 - g 70 -3.6 -4.60487 | overlap 2468033 GATCAGCCTGAAAAA GCCGCTGG GCAAGG CCAATGGC GAAACCGTCACCGTG Avi_2951 2467255 - 2468313 + | ABC transporter nucleotide binding/ATPase protein TERM 2688 2468831 - 2468808 - g 82 -10.3 -4.10007 | overlap 2468797 ACAAGGTCGTGAAAA TCGCAACCG ACATAA CGGCTGCGA AGACCAAAACCATGG TERM 2689 2469061 - 2469035 - g 71 -10.8 -3.54382 | overlap 2469031 CCTGAATACAAGCAA TTCTGGCGCAGC CTC GCTGCGGCCGAA TATCAGAGCAACGAA Avi_2952 2468453 - 2470180 + | sensory methylation accepting chemotaxis protein TERM 2690 2470217 - 2470243 + F 72 -7.3 -4.20136 | opp_overlap 2470217, overlap 2470213 2470212 ACCACCTTTCAGCAA CACATTGGCGA AAACA TCGGCAGTGTG TTTCGTTTTCGGCAT TERM 2691 2470841 - 2470809 - g 83 -13.3 -3.36749 | overlap 2470810 GAGCGTGAACAGCAA GCCGCCCGCGCCC ATGTGGA GCGGGCGGGCGGC ATCGGTGCAAGCGGC TERM 2692 2470836 - 2470810 - g 85 -16.5 -2.61728 | overlap 2470809 AGCGTGAACAGCAAG CCGCCCGCGCC CATGT GGAGCGGGCGG GCGGCATCGGTGCAA TERM 2693 2470935 - 2470919 - g 70 -4.4 -4.43012 | gap 1, opp_overlap 2470919 2470923 ACGCGAACAGCAAAA CAC-GCC CGGT GGCAGTG TCTGGTCTCTGGGTC Avi_2954 2470335 - 2471228 + | hypothetical protein hisC 2472289 - 2471231 - | histidinol-phosphate aminotransferase TERM 2694 2472592 - 2472577 - H 78 -7.6 -4.30231 | AACAAGTAATATAAA CCCATT AAAA AATGGG GGTAGCCATGACTAA TERM 2695 2472963 - 2472945 - g 75 -3.9 -4.7254 | gap 1 AGCCGTGACGAAAAA TGG-CTGA TGGA TCAGGCCA AGGAGTTTTTTGTCA Avi_2957 2472612 - 2473343 + | transcriptional regulator protein TERM 2696 2473852 - 2473811 - g 74 -2.7 -4.96106 | overlap 2473820 CATAAATATGAAAAA GGCATCAACGGCATGAGCG CCAG CAGACTTGCCGCTGCAGCC ACTCTCTTGGGAATG Avi_2958 2473658 - 2474062 + | transcriptional regulator HTH family nodX 2474403 - 2475572 + | sugar acetylase TERM 2697 2475612 - 2475580 - T 100 -15.1 -4.53303 | CAGCGTGACATAAAA GCATTTCTGCGAT CCACCCC ATCGCAGAAATGC ACCCTCAAACAGGCT Avi_2961 2476099 - 2475617 - | acetyltransferase protein Avi_2962 2476566 - 2476186 - | transcriptional regulator TERM 2698 2477108 - 2477126 + G 74 -6.6 -4.42386 | GCAAAGCCGTTGAAC GTGGCTTC GAC GATGCCGC TTTTCTGGATACCAA Avi_2963 2476609 - 2477460 + | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase protein TERM 2699 2477513 - 2477484 - T 72 -5.8 -4.41241 | gap 1, opp_overlap 2477491, overlap 2477486 2477487 2477489 2477502 CAAAGCGGGAGAAAA TATCATAGGCTGC AATAA GCAGCCTATG-TG GCTCCCATCGACCTA TERM 2700 2477512 - 2477486 - T 84 -10.9 -3.80535 | opp_overlap 2477491, overlap 2477484 2477487 2477489 2477502 AAGCGGGAGAAAATA TCATAGGCTGC AATAA GCAGCCTATGT GGCTCCCATCGACCT TERM 2701 2477511 - 2477487 - T 90 -14.4 -2.87598 | opp_overlap 2477491, overlap 2477486 2477484 2477489 2477502 AGCGGGAGAAAATAT CATAGGCTGC AATAA GCAGCCTATG TGGCTCCCATCGACC TERM 2702 2477509 - 2477489 - T 72 -11.2 -2.98387 | opp_overlap 2477491, overlap 2477487 2477486 2477484 2477502 CGGGAGAAAATATCA TAGGCTGC AATAA GCAGCCTA TGTGGCTCCCATCGA Avi_2964 2478137 - 2477565 - | hypothetical protein TERM 2703 2477800 - 2477774 - G 77 -8 -4.32905 | overlap 2477771 AAAAACCCAAAACAA GCTTTGCCACGC TTG GCGTATCAAAAC GGAGAAACGCGCTTC TERM 2704 2478200 - 2478157 - R 95 -12.6 -4.27584 | overlap 2478199 ACCTCCAAGGCAAAA GGTTGCTATGCCACATCATA TCGC TTTGATGCAGCACAACAACC GATACGCCTTGAGGC metH 2481990 - 2478217 - | methionine synthase TERM 2705 2479009 - 2479027 + g 78 -8.1 -4.4261 | gap 1, overlap 2479011 ATCGGCATAGAGCGC GC-GGGCG GCTT CGCCCTGC TTTTCATCTTCCAGA TERM 2706 2479720 - 2479735 + g 87 -6.8 -4.91084 | gap 1 CTCGCGCTCGCCTGT GC-CGCC ATT GGCGCGC TTTTCTTCTTCCATG TERM 2707 2481615 - 2481572 - G 85 -10.2 -4.37886 | gap 1, opp_overlap 2481606, overlap 2481606 2481607 GCACCGGCCACAAAA CGGCGCTTGCCATCTTCGCGC TCG GCACGAAGA-AGCGCGCGGCG CACGACCTGCGCCCC TERM 2708 2482327 - 2482341 + G 88 -11.4 -4.21141 | AAATGGCTGCTGGAT CAGGCC AAT GGCCTG TTTGATTTCTTCCAG TERM 2709 2482691 - 2482667 - g 85 -11.4 -4.07568 | CCTCTTCGGCCAAAA CCGTCGGCCA TCCGC TGGCCGACCG GCTGCTGGAAGACAT Avi_2967 2482249 - 2483505 + | hypothetical protein TERM 2710 2483533 - 2483557 + F 100 -17.2 -2.89323 | opp_overlap 2483523, overlap 2483555 AAGCACCTGTTGCAA GCCCGCCTTC AATCC GAAGGCGGGC TATCTAGGCCATTTT TERM 2711 2483712 - 2483728 + G 70 -4.3 -4.58395 | overlap 2483714 TCGATTTCAAAACTG GCCGCGA ATT TCGTGCC TTTTTGCAGCGTGCC TERM 2712 2483968 - 2483956 - g 90 -10.5 -4.70887 | CCATGAAGAAATAAA GGCCG GAG CGGCC ATCGCTATGCAGGCT TERM 2713 2484254 - 2484223 - g 75 -8.8 -3.97088 | gap 2 TGGTAGAAGACGAAA CTGCCGCGA-G-CC TTGCGT GGTCATCGCGGCAG AATAAGAGCGGCCAT Avi_2969 2483627 - 2484259 + | hypothetical protein Avi_2970 2484638 - 2484306 - | hypothetical protein TERM 2714 2484812 - 2484855 + r 70 -6 -4.1958 | gap 1, opp_overlap 2484812 2484813, overlap 2484816 GGCACAGAAAAAACA TC-CGGAGTGTGTCAGGTTCA GAT TGAGCCAGACACACTCTTAGC TTCTTTCGTTTGTCT TERM 2715 2484816 - 2484850 + r 100 -18 -3.35183 | opp_overlap 2484813 2484812, overlap 2484812 CAGAAAAAACATCCG GAGTGTGTCAGGTTCA GAT TGAGCCAGACACACTC TTAGCTTCTTTCGTT yci 2485734 - 2484913 - | nuclease TERM 2716 2485119 - 2485085 - G 85 -17.2 -2.66964 | opp_overlap 2485077, overlap 2485090 GCACTGAGCAGATCA CGCAACCGGACCTTTG CAG CAAAGCCCCGGTCGCG CTCGGATTTGCATTT TERM 2717 2485668 - 2485683 + g 74 -6 -4.41348 | overlap 2485670 GTTTTGCTCTCGTCC CACCGG ATGA CCGGCG TTTGTTTGCGCCCCC TERM 2718 2485883 - 2485866 - R 100 -12.7 -4.84527 | opp_overlap 2485866 CGCAGACATGAAAAA GCCCGCA ACGC TGCGGGC TTATCATTAAGAGGC TERM 2719 2485866 - 2485883 + r 86 -12.7 -3.50853 | opp_overlap 2485866 CGCAGACATGAAAAA GCCCGCA ACGC TGCGGGC TTATCATTAAGAGGC copC 2486351 - 2485920 - | copper tolerance protein Avi_2977 2487835 - 2486432 - | transcriptional regulator GntR family TERM 2720 2486653 - 2486635 - G 80 -4.4 -5.02502 | overlap 2486636 GACACCACAGAAAAA GTCCCGCC TTC GGCTGGAG CCAGGGCGTGAAGCC TERM 2721 2487274 - 2487263 - G 84 -3.6 -5.24129 | CGGCTCCAGAAAAAA CCGG CAGA CCAG ATCGATGGCATGGGT TERM 2722 2487632 - 2487620 - G 76 -4.7 -4.72272 | overlap 2487621 2487622 CGCCGCCACGAAAAA CCCGG AGC CCGGC CGCGAGCGGATCAAC Avi_2978 2487943 - 2488806 + | conserved hypothetical protein membrane protein TERM 2723 2488867 - 2488824 - f 95 -15.4 -2.96321 | gap 1, opp_overlap 2488833, overlap 2488819 2488833 2488835 2488839 TTCACCAAAACACCA GCCAGGAAATA-CCAAGGCGC TGA GCGCCCTGGGCATTCCCTGCC CCCAATAACTAAAAA TERM 2724 2488858 - 2488833 - f 72 -8.3 -3.77464 | gap 1, opp_overlap 2488833, overlap 2488824 2488819 2488835 2488839 ACACCAGCCAGGAAA TA-CCAAGGCGC TGA GCGCCCTGGGCA TTCCCTGCCCCCAAT TERM 2725 2488855 - 2488835 - f 100 -14.7 -3.46914 | opp_overlap 2488833, overlap 2488833 2488824 2488819 2488839 ACCAGCCAGGAAATA CCAAGGCGC TGA GCGCCCTGG GCATTCCCTGCCCCC TERM 2726 2488851 - 2488839 - f 78 -10.5 -3.48269 | opp_overlap 2488833, overlap 2488835 2488833 2488824 2488819 GCCAGGAAATACCAA GGCGC TGA GCGCC CTGGGCATTCCCTGC omp 2489104 - 2489742 + | outer membrane protein TERM 2727 2489786 - 2489759 - T 78 -12.7 -2.87683 | opp_overlap 2489760, overlap 2489762 AGACTGCCTCAGACA TCAGCCCCGGT TTAACG ACCGGGGCTGT TTTTGTGATTGCTGA TERM 2728 2489760 - 2489785 + T 100 -16.9 -4.99861 | opp_overlap 2489759 2489762 GACTGCCTCAGACAT CAGCCCCGGTT TAAC GACCGGGGCTG TTTTTGTGATTGCTG TERM 2729 2489783 - 2489762 - T 81 -13 -2.69151 | opp_overlap 2489760, overlap 2489759 CTGCCTCAGACATCA GCCCCGGT TTAACG ACCGGGGC TGTTTTTGTGATTGC Avi_2980 2490548 - 2489802 - | hypothetical conserved membrane protein Avi_2981 2491890 - 2491006 - | hypothetical protein TERM 2730 2492634 - 2492645 + G 85 -2.2 -5.64421 | CTTTGGCATAGGATT CGAG ATAG TTCG TTTTTTCTTTGAGAT TERM 2731 2492878 - 2492866 - g 80 -4.7 -4.88407 | CCAGCCAACGAAAAA GCCGC CGA GCCGC AGCTTCCAAAGGTTG Avi_2982 2492032 - 2492922 + | hypothetical protein Avi_2983 2495816 - 2493561 - | hypothetical protein Avi_2984 2499160 - 2495825 - | tail fiber protein Avi_2985 2499576 - 2499157 - | tail assembly protein TERM 2732 2499210 - 2499196 - G 75 -5.6 -4.57073 | opp_overlap 2499196 GAGGTGCCTTAAAAA CCGCTT CAA ACGCGG TTTCCAGACCCCATT TERM 2733 2499612 - 2499593 - R 81 -6.3 -4.81083 | opp_overlap 2499594, overlap 2499594 GCCAACCATGAAAAA GGCCGGG AAGTGA CCCGGCT GGATTGGAGGCATCA TERM 2734 2499611 - 2499594 - R 74 -9.8 -3.47927 | opp_overlap 2499594, overlap 2499593 CCAACCATGAAAAAG GCCGGG AAGTGA CCCGGC TGGATTGGAGGCATC TERM 2735 2499722 - 2499704 - R 71 -3 -4.7497 | TGGAGGGACGAAAAA GCCCTACA CTA TTTCGGGC GGGCTTGCCAGTATC Avi_2988 2500682 - 2500260 - | hypothetical protein Avi_2989 2504485 - 2500679 - | hypothetical protein TERM 2736 2501890 - 2501939 + g 82 -13.6 -3.21416 | gap 3 CCGCCGTGTTGGTGT TGGCGGCTTGAAGCCCGG-CCGGCG CAA TGCCGGTCCCGGC--CACGCCGCCA TTGATCATGACCGTG Avi_2990 2504841 - 2504482 - | hypothetical protein Avi_2992 2505018 - 2505308 + | hypothetical protein Avi_2995 2506249 - 2505323 - | hypothetical protein Avi_2996 2506835 - 2506419 - | hypothetical protein Avi_2997 2507407 - 2506832 - | Mu-like prophage protein Avi_2998 2507846 - 2507409 - | hypothetical protein TERM 2737 2507477 - 2507506 + g 78 -11.3 -3.68619 | opp_overlap 2507439 GGACCTGACCGCCGC CCGGCGCTGGCGG CACT TCGCCCGTGTCGG TTTCGATCAGTTGAA Avi_3000 2508199 - 2507858 - | hypothetical protein TERM 2738 2508243 - 2508231 - R 77 -6.9 -4.56597 | opp_overlap 2508231, overlap 2508239 GTTCCTGGTGAAAAA GCCGA AAC CCGGC TCTTGCATCAGGAAC TERM 2739 2508277 - 2508258 - R 77 -11.4 -3.21099 | opp_overlap 2508258, overlap 2508239 CTCTTGCATCAGGAA CCGCCAGC CGAA GCTGACGG TCTCTTGCCCTGGGA Avi_3001 2509203 - 2508307 - | major head subunit protein Avi_3002 2509623 - 2509216 - | hypothetical protein Avi_3003 2510591 - 2509620 - | I protein TERM 2740 2509796 - 2509786 - G 74 -6.8 -4.3129 | opp_overlap 2509791 GATGCATCAGCAAAA GCCT TGA AGGC TGCGGCATCTTTCTT TERM 2741 2510757 - 2510736 - R 88 -8.7 -4.61873 | opp_overlap 2510735 2510738, overlap 2510739 CCCGATAAAGTAAAA CAGCCGGTA GGGT TACCGGGTG AGTTGCTTGCCGTGA Avi_3005 2512363 - 2511068 - | prophage MuSo2 F protein Avi_3006 2513913 - 2512360 - | hypothetical protein Avi_3008 2515556 - 2513913 - | hypothetical protein TERM 2742 2514203 - 2514220 + g 75 -8.4 -4.07568 | opp_overlap 2514201 2514200 TGGAAATGGAAATTG CCGCGT CTTCAA ACGCGG TTTTAAGCGGCGGCA TERM 2743 2515425 - 2515403 - G 75 -10.6 -3.76048 | TCTCAACGAAGAGAA CCTTGCAAGC CGA GCTTTCAAGG AGACCAACTGTCCGC Avi_3009 2516137 - 2515553 - | methyl-accepting chemotaxis protein TERM 2744 2515752 - 2515765 + g 80 -2.3 -5.26875 | overlap 2515741 GCGGCGATGCCTTTC GGATC GATT GTTCC TTTTTTGGTTCGGGC Avi_3010 2516457 - 2516140 - | hypothetical protein clpB 2516821 - 2516438 - | ATP-dependent Clp protease ATP-binding subunit TERM 2745 2516707 - 2516717 + g 71 -6.8 -4.17762 | CCGCTTTGACCATCC GCTC TTC GAGC TTCTTTTCACCGGTC Avi_3012 2517129 - 2516818 - | hypothetical protein Avi_3013 2517213 - 2517590 + | hypothetical protein TERM 2746 2518003 - 2517970 - T 77 -7.3 -4.46514 | AGCGACGGAAACAAA CAGGTAGACGGCG ACAAACAG CGCCGTCATCCCG ATCTTGCGCTTGAGG Avi_3017 2518532 - 2518026 - | Membrane-bound lytic murein transglycosylase B protein TERM 2747 2518224 - 2518208 - G 75 -10.8 -3.67564 | opp_overlap 2518215 AAGCATGCATGGAAA GCGCGG ACTTG CCGCGC ATCTGCCGCCAGTTA TERM 2748 2518572 - 2518557 - R 100 -7.5 -5.65927 | opp_overlap 2518557 2518562 CAGCTAAAGAAAAAA GCCGG GCAAGA CCGGC TTTGCTGAGGACGAG Avi_3018 2518993 - 2518634 - | hypothetical protein Avi_3019 2519127 - 2519456 + | hypothetical protein Avi_3023 2519467 - 2520090 + | hypothetical protein Avi_3025 2520688 - 2520041 - | hypothetical protein Avi_3027 2520975 - 2520685 - | hypothetical protein TERM 2749 2521610 - 2521587 - R 81 -9.5 -4.00868 | opp_overlap 2521585 2521587 CTACGTAGAACCAAA GCTGCTGGG TATAGC CCCAGCCGC TCTTCCATGTGTCGG Avi_3030 2522585 - 2521932 - | hypothetical protein TERM 2750 2522529 - 2522559 + g 72 -4.7 -4.63932 | overlap 2522529 2522530 GGCCATGTATTCTTT GCC-GTTGACGAGCG TAA CGC-CGTCGGTGGGC TTTTCTTCGAGAATA TERM 2751 2522646 - 2522666 + r 79 -10.3 -3.75665 | opp_overlap 2522649 CCTGTGAGGCGGCAA GGAGGGCGT TCA GCGCCCGCC TTTCATCGCGTGTCC Avi_3033 2524461 - 2523430 - | hypothetical protein TERM 2752 2524501 - 2524526 + r 74 -3.1 -5.00616 | overlap 2524504 CCATTCGGGCCAGTT ATCGGGCAGTC TTCG GACTGCCCTTC TTTTTTCCGGAACCG TERM 2753 2524504 - 2524523 + r 100 -13.6 -4.61482 | overlap 2524501 TTCGGGCCAGTTATC GGGCAGTC TTCG GACTGCCC TTCTTTTTTCCGGAA Avi_3035 2526571 - 2524499 - | transposase protein TERM 2754 2524717 - 2524685 - G 73 -12.8 -2.75963 | gap 1, overlap 2524671 2524684 ATGTTGATCCGAAAT CGCATCCA-CAGGTG CTTC CACCTGCTGGCTGCG GGTGATCAGGCGGGT Avi_3037 2527232 - 2526771 - | hypothetical protein Avi_3038 2528056 - 2527229 - | transcriptional regulator protein TERM 2755 2527374 - 2527397 + g 70 -3.8 -4.62336 | TCGGCCTGCACCTTG GGTTCTGCCA TGTA TGACAAAACC TTTTTGACGTCCGGT TERM 2756 2527659 - 2527631 - G 88 -13.3 -3.72576 | opp_overlap 2527633, overlap 2527612 2527633 2527638 TTTGCCGGGAGCAAA GATCAAAGGGCAA TCA TTGCCCTTTGATT TTTTGTCACCACCAC TERM 2757 2527633 - 2527657 + g 100 -15.9 -5.24129 | opp_overlap 2527612 2527631 2527633 2527638 TGCCGGGAGCAAAGA TCAAAGGGCAA TCA TTGCCCTTTGA TTTTTTGTCACCACC TERM 2758 2527657 - 2527633 - G 89 -15.9 -3.44848 | opp_overlap 2527633, overlap 2527612 2527631 2527638 TGCCGGGAGCAAAGA TCAAAGGGCAA TCA TTGCCCTTTGA TTTTTTGTCACCACC TERM 2759 2527652 - 2527638 - G 80 -10 -4.02719 | opp_overlap 2527633, overlap 2527633 2527631 GGAGCAAAGATCAAA GGGCAA TCA TTGCCC TTTGATTTTTTGTCA Avi_3040 2528674 - 2528315 - | hypothetical protein TERM 2760 2528679 - 2528691 + r 76 -9.1 -3.75461 | ATGGAAACCATGCCC GCCTC AAA GAGGC TTTCGTGACAATTTC Avi_3041 2529201 - 2528881 - | hypothetical protein TERM 2761 2529244 - 2529225 - H 73 -11.4 -2.64616 | opp_overlap 2529225 CCTTGATCCAGATGA GGAGGCCC TGGC AGGCCTCC TTTTTTGGGGTGGCG TERM 2762 2529225 - 2529244 + H 100 -10.7 -5.0538 | opp_overlap 2529225 CCTTGATCCAGATGA GGAGGCC CTGGCA GGCCTCC TTTTTTGGGGTGGCG TERM 2763 2529335 - 2529279 - H 100 -16.9 -4.2074 | opp_overlap 2529283 2529285, overlap 2529316 CTGTGAACACAGAAA GGTATAGCCAGAAATGGCCATTATA TCAAATG CAAAATGGCCACTTCTGGCTATATC CACGTAAATGACTGA TERM 2764 2529285 - 2529329 + H 75 -11.6 -2.88663 | opp_overlap 2529279 2529316, overlap 2529283 ACACAGAAAGGTATA GCCAGAAATGGCCATTAT ATCAAATGC AAAATGGCCACTTCTGGC TATATCCACGTAAAT Avi_9915 2530549 - 2530770 + | phage-related gp54 protein TERM 2765 2530841 - 2530819 - f 72 -10.8 -3.00121 | opp_overlap 2530819 2530824, overlap 2530821 2530824 ATCATAAATACCAGA GATAATTTCA GCG TGAAATTATC TAAATTGGATTTTTG Avi_3042 2531426 - 2531923 + | hypothetical protein TERM 2766 2532917 - 2532904 - g 78 -3.1 -5.07652 | TCGGTCAAAACAAAA GTTCC AGCC GAAAC CTATAGTCTTGCCTT Avi_3043 2531920 - 2533056 + | hypothetical protein istA 2533365 - 2534882 + | IS21 family transposase istB 2534872 - 2535666 + | IS21 family transposase Avi_3047 2538404 - 2536851 - | hypothetical protein TERM 2767 2536933 - 2536969 + g 75 -10.3 -3.73224 | gap 3, opp_overlap 2536926 ACAAAAGCGTTGACG CCCATGGCGCTCACCTGG GCTG CCAGG--AGCGCC-TGGG TTTCCTCCAGCGTCG Avi_3048 2539762 - 2538404 - | hypothetical protein Avi_3049 2540358 - 2539759 - | hypothetical protein Avi_3052 2541042 - 2540659 - | kinesin protein Avi_3053 2541257 - 2541039 - | DnaK suppressor protein Avi_3055 2541805 - 2541452 - | hypothetical protein pntB 2542074 - 2541802 - | NAD(P)+ transhydrogenase beta chain Avi_3058 2542786 - 2542247 - | Membrane-bound lytic murein transglycosylase B protein TERM 2768 2542795 - 2542776 - G 76 -4.9 -4.81212 | opp_overlap 2542778, overlap 2542778 CCCAGCATAAGAAAA CAGCCGG GCAAGA CCGGCTT TGCTGAGGACGATTC Avi_3060 2543859 - 2543206 - | hypothetical protein Avi_3062 2544757 - 2544104 - | hypothetical protein TERM 2769 2544612 - 2544634 + g 78 -8.5 -4.20025 | gap 1 GCGTATTTCATGATC TTGC-GGACG GTCT CGTCCTGCAA TTTGTCTTCCGGCTT TERM 2770 2544783 - 2544797 + H 83 -10 -4.07568 | CCTGATGGTTTTGAC GGCGTT TCG AACGCC TTTTGAAGCCGCCAG Avi_3065 2545274 - 2545495 + | hypothetical protein Avi_3067 2546690 - 2545647 - | hypothetical protein TERM 2771 2545890 - 2545900 + g 74 -8.2 -4.13945 | CCGTTGCAGACGCTT GCCG ATT CGGC TTTTCAGCTGGGCAT TERM 2772 2546730 - 2546755 + r 74 -3.1 -5.00616 | overlap 2546733 CCATTCGGGCCTGTT ATCGGGCAGTC CTAG GACTGCCCTTC TTTTTTCCGGAACCG TERM 2773 2546733 - 2546752 + r 100 -13.6 -4.61482 | overlap 2546730 TTCGGGCCTGTTATC GGGCAGTC CTAG GACTGCCC TTCTTTTTTCCGGAA Avi_3068 2548794 - 2546728 - | transposase protein Avi_3069 2549255 - 2548791 - | hypothetical protein TERM 2774 2549134 - 2549147 + g 80 -9.5 -4.19735 | CATTCGCGGATGGCG CGGGC CATC GCCCG TTTGATTTTGGCGCG TERM 2775 2549685 - 2549715 + r 100 -14.8 -3.72051 | opp_overlap 2549693, overlap 2549688 2549689 AAATTTGCTCATCCC CGACCGAAGCGACA ACT TGTCGCTTCGATTG TTTGAGGTTATTGGC TERM 2776 2549688 - 2549712 + r 100 -12.9 -3.98291 | opp_overlap 2549693, overlap 2549685 2549689 TTTGCTCATCCCCGA CCGAAGCGACA ACT TGTCGCTTCGA TTGTTTGAGGTTATT TERM 2777 2549689 - 2549711 + r 100 -16.4 -2.9789 | opp_overlap 2549693, overlap 2549688 2549685 TTGCTCATCCCCGAC CGAAGCGACA ACT TGTCGCTTCG ATTGTTTGAGGTTAT Avi_3073 2550458 - 2550108 - | hypothetical genomic island protein TERM 2778 2550302 - 2550285 - G 71 -7.7 -3.96148 | overlap 2550296 TTTGGGGATCAGAAA CACCCGA ACCA TCAGGTG AATAACCACCTGCCG TERM 2779 2550482 - 2550503 + r 70 -5.8 -4.28774 | overlap 2550485 CCCGATTTTCGCGGT CACCCGGT AACCCA ACCGGCTG TTTTGAATTGGGTAA TERM 2780 2550672 - 2550635 - R 70 -11.2 -2.80291 | opp_overlap 2550637 AATCAGTGGAGCATA GCGGTCTCGGAGCTGC CCAAAC GCAGCGCCGAGACCTG TCATCACCCCGCAAC TERM 2781 2550637 - 2550670 + r 100 -18.2 -2.78384 | opp_overlap 2550635 TCAGTGGAGCATAGC GGTCTCGGAGCTGC CCAAAC GCAGCGCCGAGACC TGTCATCACCCCGCA TERM 2782 2550765 - 2550777 + r 71 -9.1 -3.54919 | AAAGGTGTTCGCGAG GCCGA TGC TCGGC TTTGGCGGCATCCTT Avi_3074 2551268 - 2550909 - | hypothetical protein Avi_3075 2551637 - 2551299 - | hypothetical protein TERM 2783 2551660 - 2551679 + H 100 -10.7 -4.75372 | opp_overlap 2551643 CCTCGTTGTGAACGG GGAGGCC CTGACT GGCCTCC TTTTTCATGGGTGAT TERM 2784 2551816 - 2551801 - H 72 -4.6 -4.67011 | opp_overlap 2551811 AAGTCGATCCAAAAA CGCCCA TGGC TGCGCG TCTCCGCGAATTTCG Avi_3076 2551806 - 2552465 + | transcriptional regulator TERM 2785 2552606 - 2552627 + G 77 -12.3 -3.58162 | overlap 2552603 TCTCAGAAAATTTGC CGCTGTGGC CATT GCTACAGCG TTCGTTTCGTCGTGC Avi_3077 2552586 - 2553059 + | hypothetical protein TERM 2786 2553097 - 2553062 - T 100 -21.4 -4.21194 | opp_overlap 2553064 2553071, overlap 2553064 2553071 GCCGACGAGTTAAAA CATCCAAAAGGCCGCT TAAT AGCGGCCTTTTGGATA CATTGAATGGCGAAG TERM 2787 2553095 - 2553064 - T 100 -21.8 -3.70674 | opp_overlap 2553064 2553071, overlap 2553062 2553071 CGACGAGTTAAAACA TCCAAAAGGCCGCT TAAT AGCGGCCTTTTGGA TACATTGAATGGCGA TERM 2788 2553064 - 2553095 + T 100 -21.8 -2.54896 | opp_overlap 2553064 2553062 2553071, overlap 2553071 CGACGAGTTAAAACA TCCAAAAGGCCGCT TAAT AGCGGCCTTTTGGA TACATTGAATGGCGA TERM 2789 2553071 - 2553088 + T 95 -12.7 -4.21275 | opp_overlap 2553064 2553062 2553071, overlap 2553064 TTAAAACATCCAAAA GGCCGCT TAAT AGCGGCC TTTTGGATACATTGA TERM 2790 2553088 - 2553071 - T 100 -12.7 -4.35581 | opp_overlap 2553071 2553064, overlap 2553064 2553062 TTAAAACATCCAAAA GGCCGCT TAAT AGCGGCC TTTTGGATACATTGA Avi_3078 2555780 - 2553264 - | possible heat shock protein Avi_3079 2558097 - 2556154 - | hypothetical protein TERM 2791 2556721 - 2556738 + g 70 -4.1 -4.70659 | opp_overlap 2556695 CACCGCTGTCATGCG GGAGAGG TTGC CCTTTTC TTTTTCGATCTCAGG Avi_3084 2560581 - 2559373 - | hypothetical protein TERM 2792 2559507 - 2559522 + g 76 -4.6 -4.7373 | opp_overlap 2559507 CAGCCCGGTAACATA GAGCGG CCTT CAGCTC TTTTTGCTGAAGTAG Avi_3085 2561389 - 2560634 - | Site-specific DNA methylase protein TERM 2793 2561435 - 2561396 - R 100 -23.2 -3.63627 | gap 1, opp_overlap 2561397 2561399 2561411, overlap 2561399 2561411 TTCGCACAGGCTAAA CGATCGGACCGAAAAGTGG TTG CCACTTTTCGGTCCGAT-G CTTTAGGAAAAGATC TERM 2794 2561397 - 2561436 + r 100 -23.2 -3.53444 | gap 1, opp_overlap 2561396 2561399 2561411, overlap 2561399 2561411 TCGCACAGGCTAAAC G-ATCGGACCGAAAAGTGG TTG CCACTTTTCGGTCCGATGC TTTAGGAAAAGATCG TERM 2795 2561399 - 2561433 + r 100 -26 -2.90496 | opp_overlap 2561396 2561399 2561411, overlap 2561397 2561411 GCACAGGCTAAACGA TCGGACCGAAAAGTGG TTG CCACTTTTCGGTCCGA TGCTTTAGGAAAAGA TERM 2796 2561433 - 2561399 - R 100 -26 -2.93585 | opp_overlap 2561399 2561397 2561411, overlap 2561396 2561411 GCACAGGCTAAACGA TCGGACCGAAAAGTGG TTG CCACTTTTCGGTCCGA TGCTTTAGGAAAAGA TERM 2797 2561421 - 2561411 - R 72 -6.8 -4.1899 | opp_overlap 2561411 2561399 2561397, overlap 2561399 2561396 CGATCGGACCGAAAA GTGG TTG CCAC TTTTCGGTCCGATGC TERM 2798 2561411 - 2561421 + r 72 -6.8 -4.1899 | opp_overlap 2561399 2561396 2561411, overlap 2561399 2561397 CGATCGGACCGAAAA GTGG TTG CCAC TTTTCGGTCCGATGC cspA 2561773 - 2561570 - | cold shock protein TERM 2799 2562028 - 2562007 - R 81 -10.9 -3.64822 | opp_overlap 2562017 ATCGCCTTATCCAAA CACAGATCG GTGA CGATCTGCG TCAGCTTGGCATTGT glf 2563227 - 2562124 - | UDP-galactopyranose mutase TERM 2800 2563378 - 2563395 + H 74 -2.1 -5.055 | gap 1, opp_overlap 2563378 ATTTCCAGAGCAACA CATT-CAA CAA TTGCAATG TTTTTTGAGAATTGC ina 2563810 - 2565369 + | ice nucleation protein TERM 2801 2565457 - 2565419 - f 91 -11.7 -4.03978 | opp_overlap 2565422 2565426, overlap 2565406 2565421 2565422 2565426 AACCTTCGATACAAA GACCAGATGCGGCGCCT CATAC AGGCGCCGCATTTGCTT TTACAGGCTCCATTC TERM 2802 2565455 - 2565421 - f 100 -14.3 -3.61232 | opp_overlap 2565422 2565426, overlap 2565419 2565422 2565426 CCTTCGATACAAAGA CCAGATGCGGCGCCT CATAC AGGCGCCGCATTTGC TTTTACAGGCTCCAT TERM 2803 2565454 - 2565422 - f 100 -17.8 -2.76418 | opp_overlap 2565422 2565426, overlap 2565421 2565419 2565426 CTTCGATACAAAGAC CAGATGCGGCGCCT CATAC AGGCGCCGCATTTG CTTTTACAGGCTCCA TERM 2804 2565422 - 2565454 + F 100 -20 -3.05597 | opp_overlap 2565422 2565421 2565419 2565426, overlap 2565426 CTTCGATACAAAGAC CAGATGCGGCGCCT CATAC AGGCGCCGCATTTG CTTTTACAGGCTCCA TERM 2805 2565450 - 2565426 - f 100 -17.2 -3.0079 | opp_overlap 2565422 2565426, overlap 2565422 2565421 2565419 GATACAAAGACCAGA TGCGGCGCCT CATAC AGGCGCCGCA TTTGCTTTTACAGGC TERM 2806 2565426 - 2565450 + F 100 -17.2 -4.19735 | opp_overlap 2565426 2565422 2565421 2565419, overlap 2565422 GATACAAAGACCAGA TGCGGCGCCT CATAC AGGCGCCGCA TTTGCTTTTACAGGC Avi_3091 2565675 - 2567717 + | hypothetical protein TERM 2807 2567838 - 2567794 - T 88 -10.6 -4.12532 | gap 1, opp_overlap 2567795 2567798 2567799 2567800 2567802, overlap 2567795 TGCGGCACATATAAA GCGCTACAGCGCCGCCCGCCA AATC TGGCGGACGGCGCTGCT-CTA TTTTCTGCCGAAGAC TERM 2808 2567837 - 2567795 - T 87 -14.1 -3.07198 | gap 1, opp_overlap 2567795 2567798 2567799 2567800 2567802, overlap 2567794 GCGGCACATATAAAG CGCTACAGCGCCGCCCGCCA AATC TGGCGGACGGCGCTGCT-CT ATTTTCTGCCGAAGA TERM 2809 2567795 - 2567838 + T 81 -8.6 -4.36914 | opp_overlap 2567794 2567795, overlap 2567798 2567799 2567800 2567802 GCGGCACATATAAAG CGCTACAGCGCCGCCCGCCA AATC TGGCGGACGGCGCTGCTCTA TTTTCTGCCGAAGAC TERM 2810 2567798 - 2567836 + T 100 -15.3 -3.79419 | gap 1, opp_overlap 2567795 2567794, overlap 2567795 2567799 2567800 2567802 GCACATATAAAGCGC TA-CAGCGCCGCCCGCCA AATC TGGCGGACGGCGCTGCTC TATTTTCTGCCGAAG TERM 2811 2567799 - 2567834 + T 100 -20.4 -3.48115 | opp_overlap 2567795 2567794, overlap 2567798 2567795 2567800 2567802 CACATATAAAGCGCT ACAGCGCCGCCCGCCA AATC TGGCGGACGGCGCTGC TCTATTTTCTGCCGA TERM 2812 2567800 - 2567833 + T 100 -23.9 -2.68387 | opp_overlap 2567795 2567794, overlap 2567799 2567798 2567795 2567802 ACATATAAAGCGCTA CAGCGCCGCCCGCCA AATC TGGCGGACGGCGCTG CTCTATTTTCTGCCG TERM 2813 2567802 - 2567831 + T 100 -20.7 -2.87772 | opp_overlap 2567795 2567794, overlap 2567800 2567799 2567798 2567795 ATATAAAGCGCTACA GCGCCGCCCGCCA AATC TGGCGGACGGCGC TGCTCTATTTTCTGC Avi_3092 2569105 - 2567867 - | peptidase protein TERM 2814 2569416 - 2569373 - R 70 -7.3 -4.10164 | gap 1, opp_overlap 2569376 2569377 2569378, overlap 2569374 2569381 CGATCACCAGACAAA CGTAGATACGGCGCGCGTCC TGTCG GGACGCGCGCCGCCAAT-CA TTTAAAATAACTCTT TERM 2815 2569376 - 2569416 + r 73 -9 -3.61922 | gap 2, opp_overlap 2569374 2569373 2569381, overlap 2569377 2569378 TCACCAGACAAACGT AGA-T-ACGGCGCGCGTCCT GTC GGGACGCGCGCCGCCAATCA TTTAAAATAACTCTT TERM 2816 2569377 - 2569415 + r 77 -12.5 -2.76671 | gap 2, opp_overlap 2569374 2569373 2569381, overlap 2569376 2569378 CACCAGACAAACGTA GA-T-ACGGCGCGCGTCCT GTC GGGACGCGCGCCGCCAATC ATTTAAAATAACTCT TERM 2817 2569378 - 2569413 + r 75 -11.8 -2.92792 | gap 1, opp_overlap 2569374 2569373 2569381, overlap 2569377 2569376 ACCAGACAAACGTAG AT-ACGGCGCGCGTCCT GTC GGGACGCGCGCCGCCAA TCATTTAAAATAACT TERM 2818 2569409 - 2569381 - R 100 -23.2 -2.99948 | opp_overlap 2569378 2569377 2569376, overlap 2569374 2569373 AGACAAACGTAGATA CGGCGCGCGTCC TGTCG GGACGCGCGCCG CCAATCATTTAAAAT Avi_3093 2569900 - 2569454 - | hypothetical protein TERM 2819 2569888 - 2569902 + g 76 -2.8 -4.91109 | GAGCTGTTTTCGCAA AAATGC TTC GCATTG TTTTTCTCCTCGAAG Avi_3095 2570522 - 2570142 - | hypothetical protein TERM 2820 2570258 - 2570279 + g 70 -5.1 -4.52589 | gap 1, opp_overlap 2570258 CCACCGGAATACCAA TCGACACCTG CGT CAGG-GCCGA TTTTATATGGGCAGG TERM 2821 2570512 - 2570494 - G 72 -6 -4.37886 | opp_overlap 2570497 GCATGCCTGACAAAA TCACCGAC CTG ATCGGTAA ATTCGTACAGACCCT Avi_3097 2572154 - 2570619 - | GGDEF family protein TERM 2822 2571834 - 2571818 - G 75 -8.7 -4.0156 | opp_overlap 2571830 2571831, overlap 2571821 CCATATCAACAAGAA CAACCGT AAC ACGGTCG CCTCGAAGGCGGCTC TERM 2823 2571831 - 2571821 - G 71 -6.8 -4.1157 | opp_overlap 2571830, overlap 2571818 TATCAACAAGAACAA CCGT AAC ACGG TCGCCTCGAAGGCGG Avi_3098 2572705 - 2572154 - | Guanylate cyclase-related protein oriC 2573730 - 2572825 - | transcriptional regulator LysR family TERM 2824 2574028 - 2574050 + G 83 -9.8 -4.32579 | overlap 2574029 CCGCTTTTGAGCCGG TGCTGCGCTA TGG TGGCGCGGCG TTTCTTCTGGCCTAT TERM 2825 2574029 - 2574049 + G 71 -11.1 -3.18824 | overlap 2574028 CGCTTTTGAGCCGGT GCTGCGCTA TGG TGGCGCGGC GTTTCTTCTGGCCTA lysE 2573817 - 2574422 + | LysE family transporter Avi_3101 2575523 - 2574426 - | hypothetical protein TERM 2826 2575655 - 2575617 - H 82 -13.4 -2.91383 | gap 1, overlap 2575620 ACTTCCAGGCAGACA CAATGGCGT-GCTAACA GACGCA TGTCAGCCACGCCATTG CGGAGCCACCATGTT TERM 2827 2575652 - 2575620 - H 73 -9.3 -3.60525 | gap 1, overlap 2575617 TCCAGGCAGACACAA TGGCGT-GCTAACA GACGCA TGTCAGCCACGCCA TTGCGGAGCCACCAT celE 2575666 - 2576829 + | cellulose synthesis protein TERM 2828 2577532 - 2577542 + G 75 -4 -4.84359 | opp_overlap 2577532 2577537 CGTTCGACGACAGAA GAAA TCA TTTC TTTTTATCGAAATGG Avi_3103 2576878 - 2577855 + | hypothetical protein TERM 2829 2577897 - 2577880 - T 100 -14.1 -5.49234 | opp_overlap 2577880 2577895 AGATTTAACAAAAAA CCCGGCG TTTC CGCCGGG TTTTCAACTCTTAGC TERM 2830 2577880 - 2577897 + T 100 -14.1 -4.1964 | opp_overlap 2577880, overlap 2577895 AGATTTAACAAAAAA CCCGGCG TTTC CGCCGGG TTTTCAACTCTTAGC rpoD 2579970 - 2577925 - | RNA polymerase sigma factor RpoD TERM 2831 2579278 - 2579290 + g 86 -9.1 -4.70319 | overlap 2579267 2579266 GTCTTCGCTGGAGCG GACCC GGC GGGTC TTTTCCTTTTCCTCG TERM 2832 2579591 - 2579616 + g 74 -6 -4.47456 | AGATACATGCGCACC GGGTCGTCCG TGCGGT CGGTCGGCTC TTTCTTCTTGGCTGT dnaG 2582693 - 2580657 - | DNA primase mnhA 2582996 - 2583574 + | Na+/H+ antiporter bioB 2583571 - 2584557 + | biotin synthase TERM 2833 2584574 - 2584563 - T 73 -3.6 -4.73677 | CGCAGAATAAACAAA GCAG GAAG CCGC TATAGATATAAAGCG TERM 2834 2584600 - 2584629 + T 82 -12.9 -2.87463 | AAGCGCAGTAGCGAC TTGTTGTGCGCCA TCCA TGGCGCACAACGC TGTATACGGAGGCTT Avi_3109 2585105 - 2584650 - | hypothetical protein carA 2585443 - 2586663 + | carbamoyl phosphate synthetase small chain TERM 2835 2586720 - 2586689 - T 100 -14.6 -4.74132 | opp_overlap 2586691 2586694, overlap 2586691 ACAGCCGATGAAAAA CATAAGCCGACCAA TCAC TTGGTCGGCTTATT TGATTCTCATGCAGA TERM 2836 2586718 - 2586691 - T 100 -17.2 -3.98658 | opp_overlap 2586691 2586694, overlap 2586689 AGCCGATGAAAAACA TAAGCCGACCAA TCAC TTGGTCGGCTTA TTTGATTCTCATGCA TERM 2837 2586691 - 2586718 + T 100 -17.2 -4.02108 | opp_overlap 2586691 2586689, overlap 2586694 AGCCGATGAAAAACA TAAGCCGACCAA TCAC TTGGTCGGCTTA TTTGATTCTCATGCA TERM 2838 2586694 - 2586715 + T 100 -14.5 -4.12899 | opp_overlap 2586691 2586689, overlap 2586691 CGATGAAAAACATAA GCCGACCAA TCAC TTGGTCGGC TTATTTGATTCTCAT Avi_3112 2588157 - 2586760 - | multidrug efflux protein TERM 2839 2588209 - 2588181 - R 100 -6.1 -5.79588 | gap 2 CCAAAACGAAAAAAA GCCGCT--TCCAG TCTGG CTGGACGAGCGGC GGGATTTCAGCATCG Avi_3113 2589319 - 2588417 - | transcriptional regulator LysR family TERM 2840 2588473 - 2588458 - G 74 -6.8 -4.32049 | TATAATCGACGAAAA CCCGCA AGGG TACGGG CATGTGGCGACGGCT Avi_3114 2589423 - 2590412 + | aldo-keto reductase Avi_3115 2591318 - 2590419 - | hypothetical protein TERM 2841 2590874 - 2590851 - G 78 -6.7 -4.57341 | AAGCTCGGTGAAAAA CGCGGTATC GAGATA GATACGGCG ATCCCCAGGGCAGTA TERM 2842 2591395 - 2591367 - R 100 -16.8 -4.72986 | gap 1 CATGTTCAGCAAAAA CTGCCGCCG-TGC AACA GCAACGGCGGCAG GCTGGTAACGGCTTG Avi_3116 2592164 - 2591481 - | Glutathione S-transferase protein Avi_3120 2593451 - 2592717 - | hypothetical protein TERM 2843 2593166 - 2593154 - G 85 -10.5 -4.36914 | opp_overlap 2593153 CCTTTGGCCAGAAAA CGGCG GTG CGCCG ATATTCGATAATGCC TERM 2844 2593612 - 2593594 - H 78 -5.2 -4.84359 | TTATCCGTAGAAAAA GCGAAAAC GGG GGTTCCGC TGATCGCCACAATTC carB 2593840 - 2597214 + | carbamoylphosphate synthase large subunit TERM 2845 2597377 - 2597358 - f 82 -9.3 -4.28762 | ATAATGCTATGAAAA CCCCTTG ATCTGG CAAGGGG ACAGCGTGGGCAAAA TERM 2846 2597870 - 2597852 - g 74 -11 -3.57263 | overlap 2597853 AGCGGCATGGCGAAA CGGCTGAC ATC GTCAGCCA CTCGGCACCCTCCGC TERM 2847 2597869 - 2597853 - g 70 -12.3 -2.74144 | overlap 2597852 GCGGCATGGCGAAAC GGCTGAC ATC GTCAGCC ACTCGGCACCCTCCG Avi_3124 2597362 - 2598648 + | hypothetical protein TERM 2848 2599016 - 2599044 + F 100 -13.1 -5.13722 | overlap 2599018 GAGTTGGATATGTGG CTGGTTCCGTAGC TTT GCTTCGGAACCTG TTTTATTTTCATGGC TERM 2849 2599018 - 2599042 + F 100 -14.3 -4.18807 | overlap 2599016 GTTGGATATGTGGCT GGTTCCGTAGC TTT GCTTCGGAACC TGTTTTATTTTCATG TERM 2850 2599433 - 2599406 - g 84 -4 -5.1861 | overlap 2599407 2599410 CCGACGAGGAAAAAA TCTACCAGATCG TCGG CGATCAGGAAGC CGATGTGAAGGCTGG greA 2599096 - 2599572 + | transcription elongation facto TERM 2851 2599598 - 2599618 + F 100 -11.1 -5.38047 | opp_overlap 2599598 2599600 CTGCTATTGAAAAAA GGCGCGCCT TGC AGGTGCGTC TTTTTTCTGTGAGTG TERM 2852 2599618 - 2599598 - f 90 -6.7 -5.08824 | opp_overlap 2599598, overlap 2599600 CTGCTATTGAAAAAA GGCGCGCCT TGC AGGTGCGTC TTTTTTCTGTGAGTG lpcC 2599653 - 2600756 + | lipopolysaccharide core biosynthesis mannosyltransferase Avi_3129 2600767 - 2601594 + | glycosyl transferase Avi_3131 2601581 - 2602387 + | hypothetical protein TERM 2853 2603060 - 2603027 - g 71 -8.1 -4.08706 | TTGGCATTACAGAAA TCACCCTCGCCGG GCAGGGAA CCGTCAAGGGCGA TCCGGTAAAAATTAT TERM 2854 2603498 - 2603482 - g 75 -8.7 -3.98214 | opp_overlap 2603486 ACTACCGATCATAAA CCCGTGA TTG TCACAGG ACCAATCAATTCGTG Avi_3134 2602690 - 2603619 + | hypothetical protein TERM 2855 2603731 - 2603753 + F 78 -12.1 -2.91264 | ATGACGTCAGATGTA GGGATCAAG ATGAA CTTGATCCC TCTATCGATGCGGGA Avi_3135 2603850 - 2604509 + | hypothetical protein TERM 2856 2604594 - 2604554 - f 93 -15.7 -2.52464 | opp_overlap 2604560, overlap 2604560 CTCGCCGTGAAGGCA CGCAAATATCTCAAACGCT TGC ATCGCTTGAGATATTTGCA AAAATGATGGGTGCG TERM 2857 2604588 - 2604560 - f 77 -9.7 -3.68619 | opp_overlap 2604560, overlap 2604554 GTGAAGGCACGCAAA TATCTCAAACGCT TGC ATCGCTTGAGATA TTTGCAAAAATGATG TERM 2858 2604665 - 2604654 - f 70 -4.4 -4.52589 | overlap 2604657 CTGTTTGAGATAAAA TCAG GGCG CTGA CCGTAAGCAGAACAG TERM 2859 2605076 - 2605042 - g 81 -2.8 -5.25803 | gap 1 AATTGCCACAAAAAA CGGCATG-GGACCTC TGTTGC GCGATCTTCATGCCG CCGGCTATCCGGTTC Avi_3137 2604704 - 2605696 + | hypothetical protein lrp 2606221 - 2605754 - | transcriptional regulator AsnC family trxB 2606412 - 2607428 + | thioredoxin-disulfide reductase Avi_3141 2607436 - 2608350 + | transcriptional regulator LysR family TERM 2860 2608549 - 2608516 - f 84 -4 -5.26316 | TCACTGCACAAAAAA CCACCATATCGC-TCA TAGC TGATGC-ACACGGTGG CTTCCTCCCAGTTCC TERM 2861 2608613 - 2608639 + F 100 -6.5 -5.91981 | gap 1, overlap 2608614 AACCTTCACACTTTA AGGGCC-CTGGA GTAA TCCGGTGGCCCC TTTTTTTTGGCTTTT TERM 2862 2608614 - 2608638 + F 83 -10 -4.11528 | gap 1, overlap 2608613 ACCTTCACACTTTAA GGGCC-CTGGA GTAA TCCGGTGGCCC CTTTTTTTTGGCTTT TERM 2863 2608752 - 2608764 + F 84 -4.1 -5.30686 | overlap 2608738 ATAGTTGCGGAGAAA CTATC ATT GGTAG TTTTTTGTAGCTGTT TERM 2864 2608814 - 2608831 + F 100 -9.1 -5.75945 | ACCTTCACACTTGAA GCATCCG TTCG CGGGTGC TTTTTTTTGGCCGCT TERM 2865 2609194 - 2609207 + G 78 -8.1 -4.52857 | TACAAGCGGGACGAG GCAGC CATT GCTGC TTTTCTATCCCGGCT Avi_3142 2608951 - 2609238 + | transcriptional regulator ArsR family Avi_3143 2609284 - 2610399 + | oxidoreductase TERM 2866 2610441 - 2610417 - T 100 -18.6 -3.09785 | opp_overlap 2610417, overlap 2610419 GTAGACCTTAATATA GACCCCGCCG CCATC CGGCGGGGTC TTTTTGCATTATTGC TERM 2867 2610417 - 2610441 + T 100 -18.6 -4.8143 | opp_overlap 2610417 2610419 GTAGACCTTAATATA GACCCCGCCG CCATC CGGCGGGGTC TTTTTGCATTATTGC TERM 2868 2610439 - 2610419 - T 95 -15.4 -3.10513 | opp_overlap 2610417, overlap 2610417 AGACCTTAATATAGA CCCCGCCG CCATC CGGCGGGG TCTTTTTGCATTATT Avi_3144 2611562 - 2610450 - | hypothetical protein TERM 2869 2611630 - 2611619 - H 71 -2.2 -4.9792 | CATGCTATACAAAAA TGCA TGAA CGCA GATCAACTGAGTTGG Avi_3145 2611622 - 2612524 + | transcriptional regulator LysR family TERM 2870 2612544 - 2612567 + T 72 -11 -3.0792 | opp_overlap 2612543 GACCGCTCAATGCAG TCCTGGTTCG CAAG CGAACCTGGA TTGCGTAACCTGTTA Avi_3146 2612880 - 2612617 - | hypothetical protein TERM 2871 2613051 - 2613014 - H 100 -10.7 -4.65838 | gap 1, opp_overlap 2613024, overlap 2613018 GAGATATTCGAAAAA GGAACACCAACGGCCATT TTC AATG-CCGTTGGTGTAAC TATCGCATCTTGAGG TERM 2872 2613047 - 2613018 - H 100 -14.5 -3.81926 | gap 1, opp_overlap 2613024, overlap 2613014 TATTCGAAAAAGGAA CACCAACGGCCATT TTC AATG-CCGTTGGTG TAACTATCGCATCTT chaA 2613239 - 2614396 + | Ca2+/H+ antiporter TERM 2873 2614549 - 2614529 - f 81 -6.7 -4.67904 | overlap 2614530 GATGAAGGGCAAAAA CCGACCTGC TGG GCAGGACGC GAACCGGGAGCCGGG TERM 2874 2614548 - 2614530 - f 72 -10.2 -3.40019 | overlap 2614529 ATGAAGGGCAAAAAC CGACCTGC TGG GCAGGACG CGAACCGGGAGCCGG Avi_3149 2614595 - 2615800 + | hypothetical protein TERM 2875 2615825 - 2615861 + T 100 -22.5 -2.92889 | opp_overlap 2615830, overlap 2615830 CCGATAGATCAATAG AAAAAGGGCGGGATGGT ATC ACCATCCCGCCCTTTTA TGTGCTGTCTTGCTA TERM 2876 2615856 - 2615830 - T 100 -22.4 -5.13344 | opp_overlap 2615825 2615830 AGATCAATAGAAAAA GGGCGGGATGGT ATC ACCATCCCGCCC TTTTATGTGCTGTCT TERM 2877 2615830 - 2615856 + T 100 -22.4 -4.60143 | opp_overlap 2615830, overlap 2615825 AGATCAATAGAAAAA GGGCGGGATGGT ATC ACCATCCCGCCC TTTTATGTGCTGTCT aatA 2617083 - 2615881 - | aspartate aminotransferase A TERM 2878 2616014 - 2615978 - G 100 -20.9 -3.0264 | opp_overlap 2615978, overlap 2615966 2615983 AAATTCGGGCCAAGA CCGAAGGCGCTGCCATG CAC CACGGCCACGCCTTCGG TTTCCAGCAGTTCGG TERM 2879 2615978 - 2616014 + g 91 -16.5 -3.55622 | opp_overlap 2615966 2615978 2615983 AAATTCGGGCCAAGA CCGAAGGCGCTGCCATG CAC CACGGCCACGCCTTCGG TTTCCAGCAGTTCGG TERM 2880 2616009 - 2615983 - G 75 -12.2 -3.1855 | opp_overlap 2615978, overlap 2615978 CGGGCCAAGACCGAA GGCGCTGCCATG CAC CACGGCCACGCC TTCGGTTTCCAGCAG TERM 2881 2617180 - 2617199 + H 71 -3.4 -4.77567 | opp_overlap 2617158 2617177 2617184, overlap 2617183 2617184 TGCCCGGATCAAGCG GAAACGGC CAGT GCCGATGC TTTTCTTGTCACCGT Avi_3152 2617245 - 2617835 + | hypothetical protein Avi_3154 2618003 - 2618893 + | permease cspA 2619353 - 2619568 + | cold shock protein TERM 2882 2619603 - 2619621 + T 100 -14.6 -5.27923 | CATTTCGCCCAGCGG CCCGGCAA GTT TTGCCGGG TTTTTTCTACCCTTC Avi_3159 2620294 - 2619647 - | hydrolase petP 2621036 - 2621500 + | transcriptional regulator MarR family TERM 2883 2621661 - 2621641 - g 71 -11.1 -3.18681 | GCTGAAGCGCAGGAA GCCCGCC GCAAGCT GGCGGGC CTGGCCTATGACCTG petR 2621506 - 2622204 + | two component response regulator TERM 2884 2622289 - 2622263 - f 100 -12.5 -5.27938 | opp_overlap 2622246 2622264 ATGCGCAAACAAAAA TTTAGAGCATC GTTCT GATGCTCTAAA GGCTGCATCCGACCA envZ 2622390 - 2623712 + | two component sensor kinase csaA 2624110 - 2623751 - | secretion chaperone proC 2624928 - 2624107 - | pyrroline-5-carboxylate reductase TERM 2885 2624255 - 2624297 + g 88 -14.9 -3.59979 | gap 1, overlap 2624256 CGCAGCGTGGCGGCA TCGTC-CGGGGACTGGTGCA ACAT TTCACCAGCCCCCGCGACGG TTTCCCGTGCGAGAC TERM 2886 2624256 - 2624296 + g 86 -16.2 -2.75844 | gap 1, overlap 2624255 GCAGCGTGGCGGCAT CGTC-CGGGGACTGGTGCA ACAT TTCACCAGCCCCCGCGACG GTTTCCCGTGCGAGA Avi_3169 2625431 - 2624931 - | hypothetical protein TERM 2887 2625839 - 2625818 - R 100 -13.7 -5.45652 | opp_overlap 2625838 ACGCGCAATAAAAAA CGGCTGCGC GTGA GCGCAACCG CTGGATAGCGTGATT Avi_3170 2626191 - 2625916 - | hypothetical protein TERM 2888 2627201 - 2627216 + G 83 -5.4 -4.90296 | GTATTTATCTGCGGC TATGCG TTGG CGCGTA TTTTTGTCGAATTTT lgt 2626523 - 2627386 + | prolipoprotein diacylglyceryl transferase Avi_3172 2627383 - 2628516 + | hypothetical protein TERM 2889 2628623 - 2628566 - f 90 -15.1 -2.91264 | overlap 2628569 CCCTGGATTGACAGA TTAC-CGCAGTGATGGTCACATCCGGC CAAATC GCCGGATCTGACCA-CGCTGCGGGCAA AATCCTGGACATAAT TERM 2890 2628619 - 2628569 - f 100 -20.6 -2.7035 | gap 1, overlap 2628566 TGGATTGACAGATTA CCGCAGTGATGGTCACATCCGGC CAAATC GCCGGATCTGACCA-CGCTGCGG GCAAAATCCTGGACA TERM 2891 2628768 - 2628785 + G 70 -4.1 -4.56775 | gap 1, overlap 2628758 GCTCCCTGCGGATCG GCCG-GAG TCG TTCACGGC TTTTTCACCCGGCAT Avi_3173 2628678 - 2629508 + | hypothetical protein pepQ 2629505 - 2630659 + | proline dipeptidase TERM 2892 2631647 - 2631631 - g 75 -10.1 -3.68529 | ACCGTACCAGGTAAA GCCCAAG ACC CCTGGGC CGCCGTCCCCGCCTC Avi_3175 2630800 - 2631732 + | hypothetical protein TERM 2893 2632287 - 2632307 + F 86 -14 -2.8655 | CTCGGCATTTCGTCA CCCTCGGG CTTGT CCCGAGGG TCTGCTGTCGCTCAA prsA 2632801 - 2633733 + | ribose-phosphate pyrophosphokinase Avi_3178 2634104 - 2634937 + | hypothetical protein Avi_3179 2635341 - 2634964 - | hypothetical protein aldA 2637138 - 2635624 - | aldehyde dehydrogenase TERM 2894 2637282 - 2637323 + r 85 -13.2 -3.2218 | opp_overlap 2637270, overlap 2637287 CAAGCTTCGCAATGC CGCAGCGCA-CAGTGTCGCA TCCC TGCGACACTGCTGCG-TGCA TTAGTGAATATTAAA TERM 2895 2637287 - 2637319 + r 100 -17.2 -2.57423 | gap 1, overlap 2637282 TTCGCAATGCCGCAG CGCA-CAGTGTCGCA TCCC TGCGACACTGCTGCG TGCATTAGTGAATAT acoR 2638280 - 2637324 - | transcriptional regulator TERM 2896 2638390 - 2638379 - H 81 -7.2 -4.72272 | opp_overlap 2638379 GCCTTGCAGCAAAAA CCGG TGGT CCGG TTCCGTCCTATGCTC TERM 2897 2638979 - 2638950 - g 71 -10.7 -3.53012 | gap 1, opp_overlap 2638950 2638954 GCGCGTTTCGGCAAA CAGCCAGGTCACGG TTG CCGTG-CCTGTCCG TTTCGTCAATGAAGA rplY 2638648 - 2639250 + | 50S ribosomal protein L25 TERM 2898 2639300 - 2639281 - f 93 -12.1 -3.92869 | opp_overlap 2639281 GGAGCGATCGATAAA CCCGCCC CTTACC GGGCGGG TTTTTTTGTGCCTTC TERM 2899 2639281 - 2639300 + F 100 -12.1 -5.66684 | opp_overlap 2639281 GGAGCGATCGATAAA CCCGCCC CTTACC GGGCGGG TTTTTTTGTGCCTTC TERM 2900 2641240 - 2641267 + G 72 -4.8 -4.57073 | opp_overlap 2641233, overlap 2641233 2641241 GCAAATGATCGAGCA GGCATTGAGCAA CGAC TGGCTCGATGCG TTTTTGCAACCAATC Avi_3187 2639645 - 2642047 + | GGDEF family protein Avi_3188 2642170 - 2642856 + | ABC transporter substrate binding protein (amino acid) pth 2642934 - 2643638 + | peptidyl-tRNA hydrolase Avi_3191 2643642 - 2644205 + | hypothetical protein Avi_3192 2644220 - 2644669 + | acetyltransferase Avi_3193 2644984 - 2644673 - | hypothetical protein TERM 2901 2644817 - 2644827 + g 74 -8.2 -4.21974 | AGCGGTCATCATCAC CCGG TTG CCGG TTTCTTCGCTCATGC Avi_3194 2645139 - 2646242 + | GTP-binding protein TERM 2902 2646276 - 2646303 + F 93 -8.4 -5.10163 | opp_overlap 2646276 AACAATCAATCACAA GCGGGACGCT CATTCAAA AGCATCCCGC TTTTATTTTGCCCTT TERM 2903 2646303 - 2646276 - f 85 -11.3 -3.584 | opp_overlap 2646276 AACAATCAATCACAA GCGGGACGCTC ATTCAA AAGCATCCCGC TTTTATTTTGCCCTT Avi_3195 2646397 - 2647893 + | hypothetical protein Avi_3196 2647942 - 2648412 + | hypothetical protein TERM 2904 2648788 - 2648759 - g 74 -7.1 -4.4009 | gap 1 CCTGACGGCACAAAA CAGCCGTG-CGC TCAGATC GCGTCCCGGCTG GCACCTCCACGCCAG TERM 2905 2648836 - 2648859 + G 81 -13.2 -3.61398 | gap 1, overlap 2648834 2648831 ACCAACAGGGCGAGC CGGTGCTG-CG TTT CGTCAGCACCG TTCTTGAACAGGAGA Avi_3197 2648409 - 2648894 + | hypothetical protein Avi_3198 2648881 - 2649360 + | Glutathione peroxidase protein Avi_3200 2650561 - 2649656 - | hypothetical protein apt 2651066 - 2650593 - | adenine phosphoribosyltransferase TERM 2906 2650870 - 2650880 + g 71 -6.8 -4.16842 | overlap 2650851 CGCACCGTCGTGTGC GGCA GCT TGCC TTTCTTGCGGATCGG TERM 2907 2651276 - 2651309 + r 95 -15.3 -2.80796 | opp_overlap 2651276 2651278, overlap 2651284 CACATTCACAAAAAA CAGCAAAAGGCGGCC CGAA GGCCGCCTTTTGCGA ATTTGCGTCATACCA TERM 2908 2651308 - 2651276 - R 100 -18.6 -5.29782 | gap 1, opp_overlap 2651276 2651284, overlap 2651278 CACATTCACAAAAAA CAGCAAAAGGCGGCC CGAA GGCCGCCTTTTGC-G AATTTGCGTCATACC TERM 2909 2651307 - 2651278 - R 100 -22.3 -4.2748 | opp_overlap 2651276 2651284, overlap 2651276 CATTCACAAAAAACA GCAAAAGGCGGCC CGAA GGCCGCCTTTTGC GAATTTGCGTCATAC TERM 2910 2651284 - 2651301 + r 100 -14.1 -4.17089 | opp_overlap 2651278 2651276, overlap 2651276 CAAAAAACAGCAAAA GGCGGCC CGAA GGCCGCC TTTTGCGAATTTGCG fbcC 2652187 - 2651333 - | cytochrome c1 fbcB 2653481 - 2652213 - | ubiquinol-cytochrome c reductase cytochrome b subunit petA 2654148 - 2653495 - | ubiquinol-cytochrome c reductase iron-sulfur subunit TERM 2911 2654396 - 2654375 - H 80 -5.7 -4.89339 | opp_overlap 2654377, overlap 2654363 2654376 2654377 AACCAGGGATAAAAA TTCCCCTGC AATT GCAGGGGTT TGCGCTTTATCAAGA TERM 2912 2654395 - 2654376 - H 71 -9.2 -3.52519 | opp_overlap 2654377, overlap 2654363 2654375 2654377 ACCAGGGATAAAAAT TCCCCTGC AATT GCAGGGGT TTGCGCTTTATCAAG TERM 2913 2654394 - 2654377 - H 77 -12.7 -2.70788 | opp_overlap 2654377, overlap 2654363 2654376 2654375 CCAGGGATAAAAATT CCCCTGC AATT GCAGGGG TTTGCGCTTTATCAA TERM 2914 2654377 - 2654394 + H 91 -12.7 -3.74347 | opp_overlap 2654363 2654376 2654375 2654377 CCAGGGATAAAAATT CCCCTGC AATT GCAGGGG TTTGCGCTTTATCAA TERM 2915 2654727 - 2654713 - H 72 -5.7 -4.46072 | overlap 2654725 2654726 TGCAACAAATAGAAA GCGTT ATAGA AACGC AGTCTGCACCCTATA Avi_3207 2654780 - 2655721 + | hypothetical protein Avi_3208 2658022 - 2656145 - | ABC transporter nucleotide binding/ATPase protein Avi_3210 2658207 - 2658659 + | aminoglycoside N6'-acetyltransferase TERM 2916 2658772 - 2658723 - T 100 -18.8 -3.10344 | gap 1 CCTTCATTCAAGATA GTCAGCGATGTCAGATGCTCGGC ACCTG GCCGAGCATCTGACATCGG-GAA TGAGAGCGTCTGTCA TERM 2917 2658813 - 2658796 - T 93 -12.7 -4.00042 | opp_overlap 2658794 2658796 TCTGTCAGCAAAGAA CGGCGGA TCAC TCCGCCG CCGTTTCCTGCACCT Avi_3213 2660662 - 2658803 - | ABC transporter nucleotide binding/ATPase protein TERM 2918 2658866 - 2658852 - G 80 -4.9 -5.00616 | TCGTCGGCCAAAAAA CCACC CGACT GGCGG TTCCATAGATCGGCA Avi_3216 2661130 - 2661615 + | tRNA/rRNA methyltransferase TERM 2919 2661732 - 2661761 + F 71 -2.1 -4.90266 | opp_overlap 2661732 CGTGCTATCATTGAA GCTGGATTTGC AATCATGA GCCAATACAGC TTTTTCGTTAGTGCA TERM 2920 2662163 - 2662202 + G 71 -10.6 -3.54129 | gap 1 GGTGCGGGCCATGGC GGTGGCCGGCATTGGCGGC TCA GCCGCTGGGGCTG-CCGCC TTTGCCCGCAATGTC TERM 2921 2662251 - 2662300 + G 83 -7.7 -4.56978 | gap 1 CCGGTCTGCGCGGTG GTGTCCGGCTATGGACTGGGCGAT GTC GTCGCCGAGGCCTTGGGCGG-CGC TTTCTTCTTTGGCCC TERM 2922 2662603 - 2662625 + G 71 -7.7 -4.08692 | gap 2 TCATCACCTTCAGCA CGCGCGTCGGG CTG CCCG-CGC-CG TTTTCGCCACCCTTG Avi_3218 2661855 - 2663261 + | OmpA family protein flaA 2664257 - 2663298 - | flagella associated protein Avi_3220 2664722 - 2664444 - | hypothetical protein TERM 2923 2665484 - 2665522 + G 75 -5.4 -4.65916 | gap 2, opp_overlap 2665504 GCGAGGAATATTTCT TTCTGCCGCATCGCCAGG AACCG CGTGGC-AT-CGGCGGAA TTTTCTTCGACTGGC hemF 2664895 - 2665809 + | coproporphyrinogen III oxidase TERM 2924 2665866 - 2665851 - f 78 -5.4 -4.7373 | opp_overlap 2665835 2665851 TGATCGCAGCAAAAA CCCCAT AATT ATAGGG TCTTTTGCTGCGATA TERM 2925 2665925 - 2665915 - f 77 -3.2 -5.1356 | CTTGATTAACAAAAA CTGC ATT ACAG GCCCGTTAATCGAAA Avi_3224 2665988 - 2666293 + | hypothetical protein TERM 2926 2666379 - 2666365 - T 78 -8.5 -4.28375 | opp_overlap 2666365 2666367, overlap 2666358 GCAAGAGAGCGAAAA GCCGC CAGGC GCGGC GTTTAGCAAGCTTCA TERM 2927 2666472 - 2666417 - T 70 -11.2 -2.72639 | gap 1, overlap 2666403 2666416 ATTCCTAAATAACAG GAAGCACTGAC-CTTTGAGGGGTCGTT GCC AACGCCCCCTCACCGCAGCAATGCTTC GGGAGGAAAGAACCA papS 2667989 - 2666727 - | poly(A) polymerase Avi_3227 2668642 - 2667986 - | NTP pyrophosphohydrolase MutT family Avi_3228 2669211 - 2668639 - | hypothetical protein TERM 2928 2669151 - 2669137 - G 78 -9.2 -4.09243 | GATATCGCCGCAAAA CGCCGG GTT CCAGCG CTCAACCGGTGGAAG TERM 2929 2669521 - 2669505 - g 70 -2.1 -4.72272 | GCGCTCGATGAAAAA GCCATCG TCG CTCTGGC TGAACAGGCCCTGGC moxR 2669463 - 2670491 + | MoxR family protein TERM 2930 2670579 - 2670568 - g 74 -7.2 -4.37886 | opp_overlap 2670567 2670568 GGATCGTCGAGAAAA CCCC GACC GGGG ATGTTCTGGCCCGCG Avi_3231 2670507 - 2671469 + | hypothetical protein TERM 2931 2671737 - 2671754 + G 77 -10.5 -3.84406 | overlap 2671722 GCGGCACATCGGTTG CCGGCGG TGGG CCGCTGG TTCTTGTCATCGACA Avi_3232 2671469 - 2674297 + | hypothetical protein TERM 2932 2675303 - 2675252 - g 100 -14.4 -4.13767 | opp_overlap 2675264 TCGGCCACCGGAAAA GCAGGATGGCACGCCGATCAACGA GTTG TCGCTGATCGCCTTTCCAACCCGC GAGCTATTTGTCGAA Avi_3233 2674299 - 2676368 + | hypothetical protein TERM 2933 2676482 - 2676468 - g 76 -3.5 -5.00616 | gap 1, opp_overlap 2676468 TTTGGGCTGAAAAAA GCC-GG TCAA CCTGGC TTGTACGGTGGTACA TERM 2934 2676689 - 2676670 - g 75 -4.2 -4.72986 | gap 1, opp_overlap 2676681, overlap 2676671 GATTTTCACGAAAAA TCC-GCTGC CTG GCGGCTGGA CTGCTGCATTTTTGA Avi_3234 2676368 - 2676874 + | ABC transporter membrane spanning protein (polyamine) Avi_3235 2676883 - 2677311 + | acetyltransferase Avi_3236 2677343 - 2677759 + | acetyltransferase Avi_3238 2677800 - 2678633 + | metallo-beta-lactamase TERM 2935 2678726 - 2678678 - T 100 -14.7 -3.36581 | opp_overlap 2678681 2678681, overlap 2678668 2678667 2678680 2678681 GAAACCGCTAACCAA TATGGTTACGCTGCCATGCGTTT TAA AAACGTATGGCAGCGTAACACTT TAAATCTGCTGTAGT TERM 2936 2678723 - 2678680 - T 100 -19.2 -3.24597 | gap 1, opp_overlap 2678681 2678681, overlap 2678668 2678667 2678678 2678681 AACCGCTAACCAATA TGGTTACGCTGCCATGCGTTT TAA AAACGTATGGCAGCGTAAC-A CTTTAAATCTGCTGT TERM 2937 2678681 - 2678724 + T 100 -22.8 -3.73414 | gap 1, opp_overlap 2678668 2678667 2678680 2678678 2678681, overlap 2678681 ACCGCTAACCAATAT G-GTTACGCTGCCATGCGTTT TAA AAACGTATGGCAGCGTAACAC TTTAAATCTGCTGTA TERM 2938 2678681 - 2678723 + T 100 -23 -2.83566 | opp_overlap 2678668 2678667 2678680 2678681 2678678, overlap 2678681 ACCGCTAACCAATAT GGTTACGCTGCCATGCGTTT TAA AAACGTATGGCAGCGTAACA CTTTAAATCTGCTGT TERM 2939 2678723 - 2678681 - T 100 -20.8 -2.54276 | opp_overlap 2678681 2678681, overlap 2678668 2678667 2678680 2678678 ACCGCTAACCAATAT GGTTACGCTGCCATGCGTTT TAA AAACGTATGGCAGCGTAACA CTTTAAATCTGCTGT Avi_3239 2679321 - 2678746 - | acetyltransferase Avi_3241 2679626 - 2680594 + | hypothetical protein Avi_3242 2680974 - 2680576 - | hypothetical protein TERM 2940 2681057 - 2681033 - H 83 -12.9 -3.05596 | overlap 2681038 CATTTTTTCACGGAA CTCAACCGGCT GTC ATCCGGTTGAG ACCCTGATGGATACA Avi_3243 2681119 - 2682027 + | hypothetical protein clpP 2682260 - 2682841 + | ATP-dependent Clp protease proteolytic subunit ClpP TERM 2941 2682864 - 2682887 + F 100 -16 -5.23292 | opp_overlap 2682864 ACCATGACGATACAA CCCCGTCGGA GCAA TCCGGCGGGG TTTTGTTTTATGTGC TERM 2942 2682887 - 2682864 - f 95 -13.8 -3.56541 | opp_overlap 2682864 ACCATGACGATACAA CCCCGTCGGA GCAA TCCGGCGGGG TTTTGTTTTATGTGC TERM 2943 2683244 - 2683280 + G 86 -8.5 -4.56775 | GGTCGACGCCCGGTG CCGCTCTGCTGGTCACC GCC GGTGTGCCGCAAGGCGG TTTTTCAGCAGCAGT TERM 2944 2684004 - 2684019 + G 74 -8.2 -4.11692 | overlap 2684009 2684010 ATCGGTCGCGGGTCT GGCGCT GATC GGCGCC TTTTCCGGGTCGATC Avi_3247 2683015 - 2684199 + | benzoate transport protein TERM 2945 2685738 - 2685727 - g 71 -7.2 -4.14392 | opp_overlap 2685727 TCCCAATCGGGAAAA GGCG GCAT CGCC TATATCCTGCAACAG leuA 2684548 - 2686254 + | 2-isopropylmalate synthase TERM 2946 2686297 - 2686260 - T 100 -19.4 -3.794 | opp_overlap 2686265, overlap 2686265 GGCGAAGTGATTAAA TCAAACACGGCGGGAA ATAAAA TTCCCGCCGTGTTTAA AAACCACCTTTATGA TERM 2947 2686265 - 2686292 + T 100 -17.1 -3.53343 | opp_overlap 2686265 2686260 AGTGATTAAATCAAA CACGGCGGGAA ATAAAA TTCCCGCCGTG TTTAAAAACCACCTT TERM 2948 2686292 - 2686265 - T 100 -17.1 -4.10953 | opp_overlap 2686265, overlap 2686260 AGTGATTAAATCAAA CACGGCGGGAA ATAAAA TTCCCGCCGTG TTTAAAAACCACCTT Avi_9916 2687340 - 2686729 - | hypothetical protein Avi_3250 2687910 - 2687449 - | transcriptional regulator AsnC family Avi_3251 2688003 - 2689124 + | dehydrogenase Avi_3252 2689239 - 2689679 + | hypothetical protein TERM 2949 2691040 - 2691022 - g 77 -10.2 -3.79251 | CATCGCACCACCAAA CGCCCCCG CAT CGAAGGCG CGCAGGTGGCCATTG TERM 2950 2691558 - 2691541 - g 75 -5.5 -4.63048 | GTCACAAACAACAAA TCCTCCT ATAC AGGTGGA AATCATGAAATAAAC vgrG 2689885 - 2692017 + | vgrG protein Avi_3255 2692028 - 2692864 + | hypothetical protein Avi_3256 2692871 - 2693338 + | hypothetical protein Avi_3257 2693463 - 2693768 + | phospholipase Avi_3258 2693922 - 2694692 + | hypothetical protein TERM 2951 2694836 - 2694859 + F 100 -8.1 -5.49569 | gap 1, opp_overlap 2694836 GACGATTGACCCAAA GCCGCC-CGG ATTTC CTGAGGCGGC TTTTTTGTGTTCATG TERM 2952 2696043 - 2696025 - g 70 -4.4 -4.54821 | overlap 2696026 ACCGCAACGACAAAA GCCGGGTC TGC GAGCCGGG CTCCGTCAAGGTGAT TERM 2953 2696261 - 2696235 - g 76 -7.2 -4.47328 | gap 1, overlap 2696236 AAGCCCATGAGAAAA GCGCGCGCGCC TGGTAT GGCG-GCGCGG TCGGCATGGTCGGCT trpEG 2694914 - 2697103 + | anthranilate synthase components I and II Avi_3260 2697100 - 2697606 + | acetyltransferase TERM 2954 2697746 - 2697720 - f 74 -8.7 -3.98661 | gap 1, opp_overlap 2697720 GAGACCCATCATAAA CCGTCC-AGCCT TTGC AGGCTTGGGCGG TTTTGCCGTCTTAAG TERM 2955 2697720 - 2697746 + F 91 -10.9 -4.1964 | gap 1, opp_overlap 2697720 GAGACCCATCATAAA CCGTCC-AGCCT TTGC AGGCTTGGGCGG TTTTGCCGTCTTAAG Avi_3261 2697806 - 2698723 + | cation efflux system protein Avi_3262 2698720 - 2699184 + | hypothetical protein Avi_3264 2699311 - 2699754 + | GTP cyclohydrolase I Avi_3266 2701037 - 2700207 - | hypothetical protein TERM 2956 2701141 - 2701174 + r 82 -9.5 -4.28774 | opp_overlap 2701148, overlap 2701134 2701148 2701170 TGTTCTGGTCCACGA CGAAAAACGGCGGGA TTTC TCCCGCCGTTGCTGG TTTTAGCTTGAATGA TERM 2957 2701148 - 2701167 + r 100 -15 -3.37935 | opp_overlap 2701148, overlap 2701134 2701141 GTCCACGACGAAAAA CGGCGGGA TTTC TCCCGCCG TTGCTGGTTTTAGCT TERM 2958 2701167 - 2701148 - R 100 -15 -4.77036 | opp_overlap 2701134 2701141 2701148 GTCCACGACGAAAAA CGGCGGGA TTTC TCCCGCCG TTGCTGGTTTTAGCT ureJ 2701772 - 2701194 - | urease accessory protein Avi_3269 2701972 - 2703423 + | hypothetical protein Avi_3270 2703568 - 2704527 + | hypothetical protein Avi_3271 2706729 - 2704543 - | outer membrane heme receptor TERM 2959 2706907 - 2706889 - R 81 -6.1 -4.87626 | opp_overlap 2706889 TGTCAAGATTAAAAA CATGATT AAATA AATCATG TTATATTTTGCACTT Avi_3272 2708620 - 2706953 - | Formate Tetrahydrofolate Ligase Protein avxR 2709484 - 2710209 + | transcriptional regulator LuxR family Avi_3275 2710249 - 2710698 + | hypothetical protein TERM 2960 2710734 - 2710699 - T 100 -16.9 -3.52652 | gap 1, overlap 2710701 2710703 TTCATCGAATTATAA GAC-ATGGCCCGGCGG TCTGC CCGCCGGGCCATTGAC AATCAGCGCTGCAGA TERM 2961 2710731 - 2710701 - T 100 -18.3 -3.33661 | overlap 2710699 2710703 CATCGAATTATAAGA CATGGCCCGGCGG TCTGC CCGCCGGGCCATT GACAATCAGCGCTGC TERM 2962 2710729 - 2710703 - T 100 -20.9 -3.2302 | overlap 2710701 2710699 TCGAATTATAAGACA TGGCCCGGCGG TCTGC CCGCCGGGCCA TTGACAATCAGCGCT Avi_3276 2711846 - 2710737 - | hypothetical protein TERM 2963 2711622 - 2711607 - G 72 -9 -3.84451 | overlap 2711601 GTCGGCAAAGCCAAA GGCCTT GGCA AAGGCC GGATCAAAGCCATAC TERM 2964 2711674 - 2711661 - G 75 -3.7 -4.82901 | CGTGCGCCACAAAAA CTGCC CATA GGCCG CAATCAGCACCAGCA tdk 2712616 - 2712038 - | thymidine kinase TERM 2965 2712393 - 2712367 - G 84 -7.2 -4.82901 | overlap 2712368 CCTCGTCGACAAAAA CGCAGGCAATCG GCT CGCTTGCATGCA TGGCCTCGACCACGG Avi_3281 2713065 - 2714066 + | ABC transporter substrate binding protein (proline/glycine betaine) Avi_3282 2714173 - 2715018 + | ABC transporter membrane spanning protein (proline/glycine betaine) TERM 2966 2715709 - 2715674 - g 77 -2.5 -5.1675 | gap 1, overlap 2715676 2715677 GCATCGACTAAAAAA GAC-CATCCTGTTCGT CAGCC ACGATCTGGATGAGGC CTTCCGGATTGGCAA Avi_3283 2715015 - 2716058 + | ABC transporter nucleotide binding/ATPase protein (proline/glycine betaine) TERM 2967 2716842 - 2716822 - g 100 -8.3 -5.42265 | overlap 2716824 GCAAATCATAAAAAA TCCCCCTTA TCA TAAGGGGCA AAAGCCGAAGGGAAA TERM 2968 2716882 - 2716894 + G 93 -5.5 -5.44119 | CTGCGGGTTGGATGC GTCGG GAA TCGAC TTTTTTTGGGGTAAA Avi_3284 2716250 - 2716981 + | hypothetical protein nolR 2717119 - 2717436 + | transcriptional regulator ArsR family TERM 2969 2717506 - 2717475 - f 90 -6.6 -5.13343 | gap 1, opp_overlap 2717475 TAATCTAAAATAAAA GGCGGCTTGATGT TAAAAAT ACATCG-GCCGCC TATCCTATTCTTGAC TERM 2970 2717737 - 2717704 - f 73 -11.7 -2.66316 | opp_overlap 2717728, overlap 2717706 2717708 CCGGCCAGCAGATGA CAGACCCCGAACCAC CAAT GCAGTTCGGAGCCCG CTCTCTTCAAAAAAA TERM 2971 2717735 - 2717706 - f 71 -10.7 -2.87468 | opp_overlap 2717728, overlap 2717704 2717708 GGCCAGCAGATGACA GACCCCGAACCAC CAAT GCAGTTCGGAGCC CGCTCTCTTCAAAAA bioA 2718297 - 2719634 + | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 2972 2719682 - 2719662 - f 100 -13.9 -4.04318 | opp_overlap 2719662 GTTAGACATGATAAA GGCGGCGGG TTT CCTGCCGCC TTTTTTAGGCCGTAG TERM 2973 2719662 - 2719682 + F 100 -16.1 -5.02074 | opp_overlap 2719662 GTTAGACATGATAAA GGCGGCGGG TTT CCTGCCGCC TTTTTTAGGCCGTAG TERM 2974 2719752 - 2719720 - f 85 -11.3 -3.6608 | opp_overlap 2719718 ACGATCTGATCCAAA TTCTTGCTGCTGCCA ATT TGACAGCGGCGAGAA AGTTCAATGGGTCTT TERM 2975 2721368 - 2721346 - g 71 -11.2 -3.28924 | opp_overlap 2721347, overlap 2721347 CACCCGGCCGGACAA TGTCGCGACC ATC GGCCGCGACT TCTTTCCGGGAGCGA TERM 2976 2721347 - 2721367 + G 87 -12.5 -3.90744 | opp_overlap 2721346 2721347 ACCCGGCCGGACAAT GTCGCGACC ATC GGCCGCGAC TTCTTTCCGGGAGCG TERM 2977 2721367 - 2721347 - g 78 -14.7 -2.57211 | opp_overlap 2721347, overlap 2721346 ACCCGGCCGGACAAT GTCGCGACC ATC GGCCGCGAC TTCTTTCCGGGAGCG Avi_3290 2720786 - 2721745 + | hypothetical protein TERM 2978 2723044 - 2723026 - g 70 -2.4 -4.84492 | overlap 2723028 TCAAGGACAAGAAAA TCGCCATC CTC AATGACAA GGGCCAGTATGGCAA braC 2722539 - 2723645 + | ABC transporter substrate binding protein (branched chain amino acid) TERM 2979 2723758 - 2723797 + F 81 -9.2 -4.05033 | overlap 2723759 2723768 ACACTTTTGCGCGAC ATGCTCTAGACGCGGATG TCAC CATCCGCGTCTAATGCCG TTTATGTGCCATGAA TERM 2980 2723759 - 2723796 + F 79 -12.7 -3.02698 | overlap 2723758 2723768 CACTTTTGCGCGACA TGCTCTAGACGCGGATG TCAC CATCCGCGTCTAATGCC GTTTATGTGCCATGA TERM 2981 2723768 - 2723787 + F 85 -13.6 -2.82234 | overlap 2723759 2723758 GCGACATGCTCTAGA CGCGGATG TCAC CATCCGCG TCTAATGCCGTTTAT Avi_3295 2723929 - 2724798 + | Aldose 1-epimerase protein Avi_3296 2724795 - 2725457 + | chloramphenicaol phosphotransferase protein TERM 2982 2725660 - 2725682 + G 83 -9.8 -4.36914 | opp_overlap 2725660 2725652, overlap 2725661 GAGGAAATCGACATA TCCGGCAAGA TCG TCGTGCCGGG TTTTATCGACACGCA TERM 2983 2725661 - 2725681 + G 71 -11.1 -3.21934 | opp_overlap 2725660 2725652, overlap 2725660 AGGAAATCGACATAT CCGGCAAGA TCG TCGTGCCGG GTTTTATCGACACGC TERM 2984 2726824 - 2726811 - g 70 -3.7 -4.56597 | overlap 2726812 CTTCGGGCTGAAAAA GGGCG CCAT CGCCT CCACCGTCGGCCATG TERM 2985 2727051 - 2727072 + G 70 -4.3 -4.59773 | GGCCGCTTACGCGCT CGGCACC ACCTTGCA GGAGCCG TTTTTGCAGGTCGCC ade 2725477 - 2727171 + | adenine deaminase Avi_3298 2727226 - 2727489 + | hypothetical protein Avi_3299 2727493 - 2727759 + | addiction module toxin Txe/YoeB family aglA 2729434 - 2727767 - | alpha-glucosidase TERM 2986 2729595 - 2729649 + H 95 -13.6 -3.53224 | GCGGGGGCTTCTGCG TGATTCCCCGGCGAAATGGCACCC GATATCA GGCTCTCGTTTCGCCGGGGGAGCA TTTCAAGCGGGACTA TERM 2987 2729971 - 2730004 + G 85 -11.6 -4.08394 | GCCGCTGGGTCTATT GGCGCGGCGCTGGT GCCTGA GCCAGGGCCTCGCC TTTTCCACCAGCTAT Avi_3301 2729711 - 2730778 + | glycosyltransferase engA 2732222 - 2730798 - | GTP-binding protein TERM 2988 2732101 - 2732125 + g 73 -12.7 -2.78384 | overlap 2732096 TTGGCCTCACCGGGC CGCCGGTCGCG GGT CACGCCCGGCG TGTCATCGACAAGCG TERM 2989 2732323 - 2732279 - R 75 -11.4 -2.94337 | overlap 2732274 GACTTTAAAACAGTA GCGCATCGGAGCGAAACCTG TGAAG CGGTTTTCGATCCGATGCGT GATGGCATGTCGGGC Avi_3303 2733046 - 2732375 - | hypothetical protein TERM 2990 2732917 - 2732905 - G 82 -10.5 -4.14257 | TGTAATAATCATAAA GCCGG TAT CCGGC GGTGCCAACCACGAT TERM 2991 2733320 - 2733305 - R 70 -4 -4.72272 | gap 1, overlap 2733306 2733316 TCTCCCCATCAAAAA GCGCGAT TAC ATCG-GC AATGGCGAGACGCCA Avi_3305 2733916 - 2733311 - | hypothetical protein TERM 2992 2735129 - 2735097 - g 78 -8.4 -4.16943 | gap 1, opp_overlap 2735096 2735100 2735102, overlap 2735103 GGCGATATTGGAAAA GCAGA-ACGGCCGGA AAAA TCCGGCCGGGTCTTC GTTTTAGGGAATTTG TERM 2993 2735122 - 2735103 - g 95 -15 -3.68761 | opp_overlap 2735102 2735100 2735096, overlap 2735097 ATTGGAAAAGCAGAA CGGCCGGA AAAA TCCGGCCG GGTCTTCGTTTTAGG Avi_3306 2734027 - 2735136 + | hypothetical protein TERM 2994 2735156 - 2735198 + T 100 -16.4 -3.97437 | opp_overlap 2735151, overlap 2735151 2735157 2735160 TTTGAAGGCAGCCCT CCTAGAGTCTGTCAGGTTCA GAC TGAACCAGACAGACTCTCGA TTCTCTTGTTTTCGT TERM 2995 2735157 - 2735197 + T 100 -19.9 -2.96836 | opp_overlap 2735151, overlap 2735156 2735151 2735160 TTGAAGGCAGCCCTC CTAGAGTCTGTCAGGTTCA GAC TGAACCAGACAGACTCTCG ATTCTCTTGTTTTCG TERM 2996 2735160 - 2735194 + T 100 -20.2 -2.69386 | opp_overlap 2735151, overlap 2735157 2735156 2735151 AAGGCAGCCCTCCTA GAGTCTGTCAGGTTCA GAC TGAACCAGACAGACTC TCGATTCTCTTGTTT Avi_3309 2736535 - 2735285 - | bacteroid development protein Avi_3310 2737910 - 2736705 - | MFS permease TERM 2997 2737861 - 2737821 - G 72 -6 -4.4078 | gap 1, overlap 2737822 2737830 GGGGGTGAAGGAAAA CCGGC-CAAAGCCCATGGC CGCC GCCATGGCCAGCGCACCGG CAAGGGCGGTAAATG TERM 2998 2737851 - 2737830 - G 71 -10.1 -3.60818 | overlap 2737822 2737821 GGAAAACCGGCCAAA GCCCATGGC CGCC GCCATGGCC AGCGCACCGGCAAGG Avi_3311 2738055 - 2738339 + | hypothetical protein TERM 2999 2738366 - 2738379 + T 70 -5.3 -4.3586 | opp_overlap 2738366 AATGGACGGCGAAAA GTCAT TGAA ATGAC TTTTGGTCTCACTCC map 2739137 - 2738388 - | methionine aminopeptidase type I Avi_3314 2740235 - 2739177 - | monooxygenase TERM 3000 2739292 - 2739254 - G 74 -11.6 -3.53012 | opp_overlap 2739256 2739289 2739290 CCTTTGTGCCGTAAA GCTCAATGCCGCGCATGA TAT CCTTGTGCGGCATCGGGC CGATGGCCATTTGCA TERM 3001 2739866 - 2739848 - G 70 -2.4 -4.86731 | TTTCGGCAAACAAAA GATCATAA TCA TCAAGATC ATAGCCGAACAATGG glpK 2742039 - 2740546 - | glycerol kinase TERM 3002 2741726 - 2741714 - G 78 -6.2 -4.56775 | AGCGTTTCGCAAAAA GCCG ATGTG CGGC GATCCTGCCAGACGA bdhA 2742307 - 2743077 + | d-beta-hydroxybutyrate dehydrogenase xdhA 2743108 - 2744580 + | xanthine dehydrogenase TERM 3003 2745327 - 2745279 - g 93 -11.6 -4.4891 | gap 1, overlap 2745280 TTCAGCACTAGAAAA TGGCGCGCCGCTCGTCA-CCCCA GGCA TGGTGCTGAAGCGCGGCACGCCG GAAAGCGAGCTGGAC TERM 3004 2745326 - 2745280 - g 87 -15.1 -3.28864 | gap 1, overlap 2745279 TCAGCACTAGAAAAT GGCGCGCCGCTCGTCA-CCCCA GGCA TGGTGCTGAAGCGCGGCACGCC GGAAAGCGAGCTGGA xdhB 2744833 - 2747178 + | xanthine dehydrogenase molybdopterin binding subunit TERM 3005 2747377 - 2747361 - g 87 -7.9 -4.74103 | CTGGCAATTGAAAAA GCCCGCA CCA TGCTGGC AGGAGGCGAAGATGA TERM 3006 2747504 - 2747541 + G 72 -4.7 -4.56597 | gap 1 GGCTCTACTGGCTGG CGAGGATCAGGCACGCCG GGC CGG-GCCCCAGGTCTTCG TTTTTGGCGCAGGCC xdhC 2747175 - 2747978 + | xanthine dehydrogenase accessory protein XdhC TERM 3007 2749353 - 2749381 + G 71 -7.4 -4.17958 | gap 1, opp_overlap 2749353, overlap 2749360 GATCGTCATTATGAA GCGCG-ATCCGCT GGCC AGCGGCTTTGCGC TTTATTCCAGCTATT Avi_3323 2748043 - 2749779 + | TPR repeat protein TERM 3008 2749940 - 2749928 - f 79 -4.8 -5.0133 | CATCGTGCTAAAAAA CCTC TCAAT GAGG CATGACAATGCTTTC Avi_3324 2750125 - 2751042 + | transcriptional regulator LysR family TERM 3009 2751856 - 2751874 + G 70 -2.3 -4.79223 | overlap 2751858 2751859 GCTGCACAACAACTA CCTGACG CTTCC CGTCGTG TTTTTCATGCTGTCC Avi_3325 2751167 - 2752399 + | hypothetical protein guaD 2752399 - 2753706 + | guanine deaminase TERM 3010 2753695 - 2753716 + F 83 -5.1 -5.04385 | opp_overlap 2753695, overlap 2753698 GGCGTGGCGTCGAAA CCGCGGATT TAAC AATCCGTTG TTTTTTCGCCCTCTG TERM 3011 2753698 - 2753713 + F 84 -7.6 -4.62085 | opp_overlap 2753695, overlap 2753695 GTGGCGTCGAAACCG CGGATT TAAC AATCCG TTGTTTTTTCGCCCT TERM 3012 2754078 - 2754068 - g 71 -6.8 -4.11216 | opp_overlap 2754068, overlap 2754069 CGTCGATGCCGAAAA CCAG CTT CTGG CCGGTGCTGTGCACG Avi_3327 2753943 - 2754854 + | ABC transporter substrate binding protein TERM 3013 2754861 - 2754889 + F 100 -13 -3.91087 | AAGTTCTGATTTTCA GGGCCGCCAGTC ACTTG GCCGGGCGGCCC TTTCCTCTCCTTTAA Avi_3328 2754948 - 2755766 + | ABC transporter nucleotide binding/ATPase protein Avi_3330 2755780 - 2756667 + | ABC transporter membrane spanning protein TERM 3014 2756704 - 2756729 + T 100 -14.7 -4.98616 | ACTCCTCCCGGCAAG CCGCTCGCGAC GTAA GTTGCGGGCGG TTTTTGATATTTTGA TERM 3015 2756865 - 2756845 - T 77 -12.6 -2.78384 | overlap 2756824 GCTGGCGGTAGCAGA CCCTTGGG ACAAG CCCAAGGG TGACGGAAGAAGACG argG 2758151 - 2756922 - | argininosuccinate synthase lrp 2758278 - 2758745 + | transcriptional regulator AsnC family Avi_3334 2758851 - 2759075 + | hypothetical protein TERM 3016 2759113 - 2759096 - g 91 -12.7 -4.09685 | opp_overlap 2759096 GGCGATCTTGTAAAA GTCGCCG TGCC CGGCGAC TTTGGTAAGCCGCGC TERM 3017 2759096 - 2759113 + G 84 -12.7 -3.72576 | opp_overlap 2759096 GGCGATCTTGTAAAA GTCGCCG TGCC CGGCGAC TTTGGTAAGCCGCGC Avi_3335 2759072 - 2759395 + | hypothetical protein tctE 2760853 - 2759432 - | two component sensor kinase tctD 2761534 - 2760869 - | two component response regulator Avi_3339 2762380 - 2761634 - | hypothetical protein TERM 3018 2762279 - 2762265 - G 70 -4.3 -4.56775 | overlap 2762268 2762270 AGCGGCCCGGAAAAA CAATC GCCGA GATTG ACGACATGGTCATAG pucM 2762740 - 2762384 - | hydroxyisourate hydrolase allA 2763246 - 2762737 - | ureidoglycolate hydrolase TERM 3019 2763368 - 2763409 + r 80 -11.5 -3.37796 | overlap 2763373 GCAAACCTGATTTCG CTATTTTATCCGCCCCGCG ATAG CGCGGGGCGGATAATTCAA TTGTCGATGCTGGAA TERM 3020 2763373 - 2763404 + r 100 -24.6 -3.24245 | overlap 2763368 CCTGATTTCGCTATT TTATCCGCCCCGCG ATAG CGCGGGGCGGATAA TTCAATTGTCGATGC Avi_3342 2767438 - 2763434 - | peptide synthetase TERM 3021 2764518 - 2764529 + g 71 -7.2 -4.11692 | opp_overlap 2764518 ATCTCACACCACAAG GCGG CAAG CCGC TTTTCAGCATCGGTC TERM 3022 2767513 - 2767487 - R 74 -2.3 -5.07971 | gap 1, overlap 2767491 2767492 2767494 2767505 GAAAACAATCAAAAA GCAAGCACAATC AAAC GATTGCGAT-GC TAGGAAACGCAAAAA Avi_3343 2767811 - 2767575 - | hypothetical protein TERM 3023 2767710 - 2767693 - G 71 -7 -4.19024 | CAAACTATATACAAA TCAGGC GCACAA GCCTGA AAACGTGAGACAATG TERM 3024 2768624 - 2768581 - R 95 -14.6 -3.22114 | overlap 2768579 2768582 TACACGATATCAAGA GCGCTTGCGCCCAGATCCGA TGGA TCAAGTCTGGGCGCAAGCAG AGAGGATCAGGCGGC TERM 3025 2768623 - 2768582 - R 100 -18.1 -2.52786 | overlap 2768581 2768579 ACACGATATCAAGAG CGCTTGCGCCCAGATCCGA TGGA TCAAGTCTGGGCGCAAGCA GAGAGGATCAGGCGG glnA 2769665 - 2768631 - | glutamine synthetase TERM 3026 2769822 - 2769847 + H 74 -6.3 -4.55118 | gap 1, opp_overlap 2769822, overlap 2769822 GCCATATTCAAAACA CC-TTAAAAGCC ACG GGTTTTTAACGG TTTTGTGTCAGATTG TERM 3027 2769918 - 2769907 - H 86 -5.8 -5.08255 | ATTTGCAAAATAAAA GGCA GCAA TGCC CGGTGGATAGCAGCG TERM 3028 2769975 - 2769948 - H 71 -2 -5.0133 | opp_overlap 2769970, overlap 2769950 GATGGCGTGAAAAAA CAGCCCAAAA TGATTTAT TTTTGGGCAA ATTGCACTTTCTATG TERM 3029 2769973 - 2769950 - H 70 -6.8 -4.13561 | opp_overlap 2769970, overlap 2769948 TGGCGTGAAAAAACA GCCCAAAA TGATTTAT TTTTGGGC AAATTGCACTTTCTA Avi_3346 2770014 - 2770244 + | glutamine synthetase translation inhibitor TERM 3030 2770307 - 2770277 - T 71 -9 -3.52073 | opp_overlap 2770283 2770304, overlap 2770280 TTGGCAACACCACAA TCAGCAGGATCATG CTG CATGACCCTGCTTC GGCTGCGCGCCAGAG TERM 3031 2770304 - 2770280 - T 90 -15.1 -2.89527 | opp_overlap 2770283, overlap 2770277 GCAACACCACAATCA GCAGGATCATG CTG CATGACCCTGC TTCGGCTGCGCGCCA TERM 3032 2770310 - 2770366 + T 84 -7.4 -4.68919 | gap 2, opp_overlap 2770325 2770343, overlap 2770304 2770312 2770316 ATGACCCTGCTTCGG C-TG-CGCGCCAGAGTATGTCAGGTTCA GAG TGAACCAGACATACTCTAGCTTGTCTTG TTTTCGTTTGTCTTT TERM 3033 2770312 - 2770363 + T 100 -14.6 -4.40882 | gap 1, opp_overlap 2770325 2770343, overlap 2770304 2770310 2770316 GACCCTGCTTCGGCT G-CGCGCCAGAGTATGTCAGGTTCA GAG TGAACCAGACATACTCTAGCTTGTC TTGTTTTCGTTTGTC TERM 3034 2770316 - 2770358 + T 100 -20.8 -3.97437 | opp_overlap 2770325 2770343, overlap 2770304 2770312 2770310 CTGCTTCGGCTGCGC GCCAGAGTATGTCAGGTTCA GAG TGAACCAGACATACTCTAGC TTGTCTTGTTTTCGT TERM 3035 2770349 - 2770325 - T 73 -11.5 -2.62184 | opp_overlap 2770316 2770312 2770310, overlap 2770343 CTGCGCGCCAGAGTA TGTCAGGTTCA GAG TGAACCAGACA TACTCTAGCTTGTCT TERM 3036 2770462 - 2770507 + T 90 -6.7 -5.09426 | gap 1, overlap 2770463 GGCACTCATTCTTGA CCG-GCACCTTCGGCTGGCAGC ATT GCTTCGAGCCGAAGGCGGGCGA TTTTTTCGACTTGAA TERM 3037 2770463 - 2770506 + T 77 -10.2 -3.64933 | gap 1, overlap 2770462 GCACTCATTCTTGAC CG-GCACCTTCGGCTGGCAGC ATT GCTTCGAGCCGAAGGCGGGCG ATTTTTTCGACTTGA Avi_3347 2770961 - 2770452 - | hypothetical protein adh 2771186 - 2772232 + | NADP-dependent alcohol dehydrogenase TERM 3038 2772335 - 2772310 - T 100 -16.9 -5.12971 | AACAGCGAACAAAAA CATCCCCCGGC CAAG ACCGGGGGATG CACAAACCTCACATC Avi_3350 2772889 - 2772365 - | hypothetical protein TERM 3039 2772911 - 2772930 + r 71 -9.2 -3.54741 | overlap 2772899 2772928 TTCCTTTCCGCTGTT GCGGACCG TTTC CGGTCCCC TTTCGCAAGGTGGTA TERM 3040 2772972 - 2772996 + r 100 -15.7 -3.84406 | CCGAATGTGTTTCAC CGGCAGCCACG CGG CGTGGCTACCG TTATTATCGTACAAC Avi_3352 2773240 - 2773073 - | hypothetical protein TERM 3041 2774088 - 2774070 - g 72 -6 -4.25658 | overlap 2774072 AGTGCAGGAAAACAA CAGCAAAA GCG TTTTGCAG AGCCTGGACCTGGTT TERM 3042 2774160 - 2774199 + G 85 -10.7 -4.27617 | gap 1 CAGTTTGGCCTATAT CGGCCCGGATGGTCGGCT GATTG AGTCGACC-TCCGATCCG TTTTCATCGGGTCTC TERM 3043 2775553 - 2775537 - g 74 -2.1 -4.92783 | overlap 2775539 AATCCACCAGAAAAA CCTGCCC TGG GGTCATG TGACCGTCAGCATCG Avi_3353 2773831 - 2775711 + | GGDEF family protein TERM 3044 2775694 - 2775726 + T 93 -11.9 -4.28375 | overlap 2775697 TTCGATGAGAATTTG TCAGCCGCGGCGGCC TGA GGCTGTCGCGACTCA TTTTCAATATCTTGG TERM 3045 2775697 - 2775723 + T 89 -13.6 -3.13068 | overlap 2775694 GATGAGAATTTGTCA GCCGCGGCGGCC TGA GGCTGTCGCGAC TCATTTTCAATATCT Avi_3355 2776737 - 2775817 - | hypothetical protein Avi_3356 2777526 - 2776819 - | hypothetical protein TERM 3046 2777937 - 2777918 - R 74 -10 -3.4594 | opp_overlap 2777915 TAAAAGCAATATCAA GGCCGGTT TATC AACCGACC GGGTTTTCCAACGGT Avi_3358 2779181 - 2777928 - | oxidoreductase TERM 3047 2778750 - 2778760 + g 71 -8.2 -4.0896 | CTTCCAGGCAAATTG CCGG TCA CCGG TTTTCCAGGCGGTTT TERM 3048 2779309 - 2779333 + G 78 -8.5 -4.25104 | overlap 2779311 TTTTACTGCCAGACC GATGGCCGCCT GGA ATGCGGCCATG TTTTCCTCGAGGGCA TERM 3049 2779311 - 2779331 + G 78 -11.1 -3.73042 | overlap 2779309 TTACTGCCAGACCGA TGGCCGCCT GGA ATGCGGCCA TGTTTTCCTCGAGGG TERM 3050 2779784 - 2779817 + G 88 -13.7 -3.72576 | opp_overlap 2779781 2779782 ACCAGCTGACAACGC CCGGCGGCCGCTTCG CCAC CTATGCCGCCGCCGG TTTCGTACGCCGCAA Avi_3359 2779264 - 2779923 + | hypothetical protein Avi_3360 2783810 - 2779962 - | two component sensor kinase/response regulator hybrid TERM 3051 2780373 - 2780359 - G 81 -4.2 -5.08824 | GCCTGATGGAAAAAA TGACGC TCC GCTTCA CCGGCATCCAGCACC TERM 3052 2781626 - 2781652 + g 72 -9.3 -3.77464 | overlap 2781627 GCAATTCCGTCATGC CCAGCACGCCG CTCAT CGGCGTGCGGA TTTCATGGCTCATAT TERM 3053 2781627 - 2781651 + g 73 -12.8 -2.85996 | overlap 2781626 CAATTCCGTCATGCC CAGCACGCCG CTCAT CGGCGTGCGG ATTTCATGGCTCATA Avi_3361 2784185 - 2784508 + | hypothetical protein TERM 3054 2784591 - 2784551 - f 100 -16.1 -4.03078 | opp_overlap 2784551 2784553, overlap 2784553 2784554 GGATTATAGTAGAAA TATTCAGCGCCCGCCCGTC CAT GATGGGCGGGCGCTTGACA TTTGGCCGCAAAACG TERM 3055 2784551 - 2784591 + F 100 -18.3 -3.53012 | opp_overlap 2784551 2784553 2784554, overlap 2784553 GGATTATAGTAGAAA TATTCAGCGCCCGCCCGTC CAT GATGGGCGGGCGCTTGACA TTTGGCCGCAAAACG TERM 3056 2784553 - 2784590 + F 100 -18.5 -2.71712 | gap 1, opp_overlap 2784551 2784553 2784554, overlap 2784551 ATTATAGTAGAAATA TTC-AGCGCCCGCCCGTC CAT GATGGGCGGGCGCTTGAC ATTTGGCCGCAAAAC TERM 3057 2784589 - 2784553 - f 100 -16.5 -3.60505 | opp_overlap 2784553 2784551, overlap 2784551 2784554 ATTATAGTAGAAATA TTCAGCGCCCGCCCGTC CAT GATGGGCGGGCGCTTGA CATTTGGCCGCAAAA TERM 3058 2784589 - 2784554 - f 100 -19.8 -2.7558 | gap 1, opp_overlap 2784553 2784551, overlap 2784553 2784551 TTATAGTAGAAATAT TC-AGCGCCCGCCCGTC CAT GATGGGCGGGCGCTTGA CATTTGGCCGCAAAA TERM 3059 2784737 - 2784720 - f 75 -11.3 -2.87132 | TGGGTGCTTCATATA TGACCGC ATCA GCGGTCA AACGCACCGAAAGTC TERM 3060 2785599 - 2785615 + G 74 -8 -4.25104 | CCTTGCCGATCATCC CGATGG CCGTT CCATCG TTTTCCTGCGCACCA rhlE 2784817 - 2786271 + | ATP-dependent RNA helicase TERM 3061 2786289 - 2786316 + T 82 -12 -3.53012 | opp_overlap 2786295, overlap 2786295 GTCCTCTGTGATTTT GCGAAAGGCCGG TTTT CCGGCCTTTTTC TTTGACCAGAAGACA TERM 3062 2786310 - 2786295 - T 82 -11.8 -3.54424 | opp_overlap 2786295 2786289 TGTGATTTTGCGAAA GGCCGG TTTT CCGGCC TTTTTCTTTGACCAG TERM 3063 2786295 - 2786310 + T 100 -11.8 -5.27335 | opp_overlap 2786295, overlap 2786289 TGTGATTTTGCGAAA GGCCGG TTTT CCGGCC TTTTTCTTTGACCAG TERM 3064 2786386 - 2786357 - T 100 -20.9 -4.87318 | opp_overlap 2786357 CTGAAAATGGAAAAA GGGCCGTGTGTTT CATC AAACACACGGCCC TTTGTTATGTTATCA TERM 3065 2786357 - 2786386 + T 100 -20.9 -4.49353 | opp_overlap 2786357 CTGAAAATGGAAAAA GGGCCGTGTGTTT CATC AAACACACGGCCC TTTGTTATGTTATCA Avi_3364 2788658 - 2786442 - | hypothetical protein TERM 3066 2788707 - 2788751 + r 100 -15.7 -3.80697 | opp_overlap 2788710 2788711 2788713, overlap 2788711 AGGAATACGAGGTTC AAAGCAGGCCTGTCCGGTCCG GAT CGCACCGGACAGGTCTGTTCA TTCTCTTGGTTTGCT TERM 3067 2788748 - 2788710 - R 100 -17.4 -3.59087 | opp_overlap 2788707 2788711, overlap 2788711 2788713 AATACGAGGTTCAAA GCAGGCCTGTCCGGTCCG GAT CGCACCGGACAGGTCTGT TCATTCTCTTGGTTT TERM 3068 2788711 - 2788747 + r 100 -23.1 -3.56056 | opp_overlap 2788710 2788711 2788713, overlap 2788707 ATACGAGGTTCAAAG CAGGCCTGTCCGGTCCG GAT CGCACCGGACAGGTCTG TTCATTCTCTTGGTT TERM 3069 2788747 - 2788711 - R 100 -20.9 -2.7497 | opp_overlap 2788711 2788707, overlap 2788710 2788713 ATACGAGGTTCAAAG CAGGCCTGTCCGGTCCG GAT CGCACCGGACAGGTCTG TTCATTCTCTTGGTT TERM 3070 2788745 - 2788713 - R 100 -17.7 -2.91873 | opp_overlap 2788711 2788707, overlap 2788711 2788710 ACGAGGTTCAAAGCA GGCCTGTCCGGTCCG GAT CGCACCGGACAGGTC TGTTCATTCTCTTGG Avi_3366 2789996 - 2788821 - | Glycine/serine hydroxymethyltransferase Avi_3369 2790804 - 2790469 - | hypothetical protein TERM 3071 2791395 - 2791380 - g 71 -10.4 -3.55761 | CATTGACCCGGTAAA GACCGC CGAA GCGGTC AATATGCCCGAGGGA Avi_3370 2790949 - 2791548 + | NAD(P)H-flavin oxidoreductase Avi_3371 2791568 - 2791969 + | hypothetical protein TERM 3072 2793316 - 2793264 - g 84 -14.9 -3.01712 | overlap 2793266 CCCTCCCCGTCAAGA GATTCCATGGCGTGGGACCCGCC ACGGCCG AGCGGATGCAACGCCATGGGATC GAAACCGGGCTCGAT TERM 3073 2793314 - 2793266 - g 73 -11.7 -3.06696 | overlap 2793264 CTCCCCGTCAAGAGA TTCCATGGCGTGGGACCCGCC ACGGCCG AGCGGATGCAACGCCATGGGA TCGAAACCGGGCTCG TERM 3074 2793780 - 2793759 - g 71 -7.2 -4.254 | opp_overlap 2793775, overlap 2793768 TGAACACCGAAGAAA GCGAGCAG ACACCG CAGCTCGC GCTCGAACTCTGATG dinP 2792636 - 2793793 + | DNA-damage-inducible protein TERM 3075 2793851 - 2793811 - T 91 -11.3 -4.08216 | gap 1, opp_overlap 2793818, overlap 2793818 CGACGGCCCTGAAAA CGAAAAAGCCTGCCGC GGGAGGAGGT GCGGCAGGC-TTTCCG AAAAGAACCGAACAA TERM 3076 2793845 - 2793818 - T 100 -11.3 -5.0925 | opp_overlap 2793818, overlap 2793811 CCTGAAAACGAAAAA GCCTGCCGC GGGAGGAGGT GCGGCAGGC TTTCCGAAAAGAACC TERM 3077 2793818 - 2793845 + T 82 -12 -3.53012 | opp_overlap 2793818 2793811 CCTGAAAACGAAAAA GCCTGCCGCG GGAGGAGG TGCGGCAGGC TTTCCGAAAAGAACC TERM 3078 2794121 - 2794101 - T 100 -11.1 -5.03994 | opp_overlap 2794101 GGCCACATACAAAAA CGCCCGC GTCATCA GCGGGCG TAGTATCAATTCAAT TERM 3079 2794162 - 2794149 - T 72 -4.5 -4.59511 | gap 1, overlap 2794138 2794150 AATAGCTTGGAAAAA GC-CGC TTA GCGAGC AACCGACTGGCGGGC Avi_3375 2794300 - 2794154 - | hypothetical protein Avi_3376 2795452 - 2794472 - | polymerase epsilon subunit TERM 3080 2796249 - 2796235 - g 78 -8.5 -4.17089 | overlap 2796226 CGGAAACGCTGAAAA CGCCG TTCTT CGGCG CGCTCGTGGATTACG Avi_3377 2795811 - 2798168 + | ornithine decarboxylase protein TERM 3081 2798220 - 2798205 - f 71 -9 -3.44527 | GATGGACCAGGACAA CCGGAT GGTC ATCCGG CCGTCGCGCGACGCA Avi_3378 2798209 - 2798751 + | acetyltransferase Avi_3380 2799289 - 2799056 - | hypothetical protein Avi_3381 2800466 - 2799426 - | hypothetical protein Avi_3382 2801516 - 2800542 - | hypothetical protein Avi_3383 2802587 - 2801580 - | hypothetical protein TERM 3082 2802313 - 2802325 + g 78 -6.3 -4.59109 | opp_overlap 2802304 TAATAATCAATTGGA TCGAT TTT ATCGA TTTTTCGGCGATGTC Avi_3385 2803573 - 2802599 - | hypothetical protein Avi_3386 2804633 - 2803578 - | beta-ketoacyl synthase domain-containing protein Avi_3387 2805646 - 2804630 - | hypothetical protein Avi_3388 2805965 - 2805657 - | hypothetical protein Avi_3389 2807364 - 2806093 - | hypothetical protein TERM 3083 2806263 - 2806240 - G 81 -12.4 -3.64703 | overlap 2806224 GCCTGCTGATGCAAA CAGGCTCAGG CGGA CCTGTGCCTG TCCACCGCTATCTGC TERM 3084 2808082 - 2808055 - R 100 -4.4 -5.86061 | opp_overlap 2808055 2808076 TGCCATTAAAAAAAA TAAAAAAATAAA TTTA TTGATTTTTTTA TTTTTTTTAATAAAT TERM 3085 2808055 - 2808082 + r 100 -4.4 -5.86965 | opp_overlap 2808055, overlap 2808076 TGCCATTAAAAAAAA TAAAAAAATAAA TTTA TTGATTTTTTTA TTTTTTTTAATAAAT Avi_3390 2808746 - 2808108 - | hypothetical protein TERM 3086 2808552 - 2808517 - G 70 -4 -4.56914 | overlap 2808520 2808521 TTAGCTAAACCAAAA CCATCAGTGGACAC GGCCGAAA ATGTCCACTGGCAG GCGAATTTATCTTCT Avi_3391 2810013 - 2808748 - | phage prohead protease HK97 family TERM 3087 2810003 - 2809993 - G 86 -5.4 -5.14563 | CGGTCTATCAAAAAA GCTT CTC AAGC GATCTGACATGATTT vgrG 2812115 - 2810028 - | vgrG protein TERM 3088 2810958 - 2810978 + g 93 -13.9 -3.83502 | AACGATCGCCACCTG CGCCCCCTC AAT GCGGGGGCG TTTCGTGTCACGATG TERM 3089 2812784 - 2812806 + G 72 -5.5 -4.44667 | gap 1, overlap 2812785 CGTGGACCGATGCCC TGCGCGG-CA CCCA TGACCGCGCC TTTGTTATTGCAGGC Avi_3394 2812606 - 2813421 + | divalent cation transporter Avi_3398 2814414 - 2813803 - | hypothetical protein TERM 3090 2814138 - 2814126 - G 73 -3.3 -4.78839 | AACCGCAGAAGAAAA GGCCA TCG TTGCC GCCGCCAGCCAGTCC TERM 3091 2814587 - 2814570 - R 71 -9.1 -3.55866 | GGACATCGAAATCAA GTGCCGC CGCT GCGACAC CATCAATCACTTGAG Avi_3401 2815048 - 2814590 - | hypothetical protein TERM 3092 2814745 - 2814706 - G 71 -10.6 -3.53779 | overlap 2814702 2814700 CCCCGAAAAGACCAA GCAGCCCGATGCGACC GTGCGTGT GGCCGCGACGGGCTAC GAGGCAACGGTGATG TERM 3093 2814978 - 2814955 - G 72 -5.1 -4.64048 | overlap 2814957 GACGATATAAACAAA CCGGGCGGC GACATG GCCGACCTG ACAAATTTAAGTTTT istB 2816293 - 2815499 - | IS21 family transposase istA 2817800 - 2816283 - | IS21 family transposase Avi_9917 2818008 - 2817856 - | hypothetical protein TERM 3094 2819096 - 2819113 + G 72 -4.7 -4.67608 | overlap 2819093 CACATCAACTGATGA GGCGTGG GCCG TCTCGCC TTTTATCTTGAAATA Avi_3404 2818905 - 2820044 + | hypothetical protein TERM 3095 2820574 - 2820585 + F 70 -7.2 -4.07687 | opp_overlap 2820573 GAACGTCAAGCGAAT GCGC AGGT GCGC TTTTCGCGGGAGCAT Avi_3406 2820659 - 2820892 + | hypothetical protein Avi_3407 2822531 - 2820873 - | transposase TERM 3096 2821408 - 2821429 + g 77 -2.1 -5.03314 | overlap 2821409 GAGATCGGCCTGCCA TTGCGCTTG CTGT CGCGCGCAC TTTTTTCGAGATCGG Avi_3408 2822930 - 2822577 - | IS66 family transposase Avi_3409 2823379 - 2822927 - | hypothetical protein Avi_3410 2823477 - 2824499 + | hypothetical protein TERM 3097 2825304 - 2825280 - g 72 -5 -4.57353 | gap 1, opp_overlap 2825300 TGGGAGGACACAAAA GCGAG-TACGA TTTA TCGTGGCTCGC ACGGCAAGATTACTC Avi_3411 2825054 - 2826250 + | gamma butyrobetaine hydroxylase protein TERM 3098 2826470 - 2826493 + G 73 -12.4 -3.06492 | opp_overlap 2826468 2826465 GAGACAATAATGAGG CGTCGTGGAC ACAA GTCCTCGACG TCTTGGAGTACATGG Avi_3412 2826262 - 2827248 + | PEP phosphonomutase protein Avi_3414 2827256 - 2828398 + | phosphonopyruvate decarboxylase protein Avi_3415 2829349 - 2828432 - | transcriptional regulator LysR family Avi_3416 2830256 - 2829426 - | hypothetical protein TERM 3099 2829703 - 2829689 - G 70 -4.2 -4.56597 | GCTTTCCGCGAAAAA CCCTGA ATG TTAGGG GTAAAAGTATTCCGT Avi_3418 2830834 - 2830253 - | transcriptional regulator protein TERM 3100 2830554 - 2830532 - G 74 -6.2 -4.46155 | overlap 2830533 2830534 TACACAGCCATAAAA CTCGCTGGTT TTG AACCAGCGCT CGTACCAACAGAATA TERM 3101 2830552 - 2830534 - G 71 -13.2 -2.55459 | overlap 2830533 2830532 CACAGCCATAAAACT CGCTGGTT TTG AACCAGCG CTCGTACCAACAGAA Avi_3419 2831623 - 2831462 - | hypothetical protein Avi_3420 2832827 - 2832165 - | transcription antitermination protein Avi_3421 2834268 - 2832814 - | hypothetical protein TERM 3102 2833763 - 2833732 - G 74 -13.8 -2.53164 | opp_overlap 2833740 2833743, overlap 2833731 2833758 TGAGTTATTACTAAG GGCCGATTTTACCG GCGC CGGTAAAACCGGCG ACGGTTCTGCCGGCG TERM 3103 2833740 - 2833785 + g 100 -18.3 -3.12999 | opp_overlap 2833732 2833731 2833758, overlap 2833743 TACTAAGGGCCGATT TTACCGGCGCCGGTAAAACCG GCGA CGGTTCTGCCGGCGACGGCAA TTCAGTCTGCGGTCG TERM 3104 2833743 - 2833767 + g 90 -17.1 -3.28712 | opp_overlap 2833732 2833731 2833758, overlap 2833740 TAAGGGCCGATTTTA CCGGCGCCGGT AAA ACCGGCGACGG TTCTGCCGGCGACGG TERM 3105 2833782 - 2833758 - G 75 -8.4 -4.07568 | opp_overlap 2833743 2833740, overlap 2833732 2833731 CCGGCGCCGGTAAAA CCGGCGACGG TTCTG CCGGCGACGG CAATTCAGTCTGCGG Avi_3423 2834533 - 2835108 + | bacteriophage repressor protein C1 TERM 3106 2835144 - 2835155 + T 74 -2.2 -5.1244 | ACCGAAAAATAATTA TGTG TTTG CGCA TTTTTATCTTGCTCA TERM 3107 2835615 - 2835594 - T 83 -12.3 -3.30203 | gap 1, overlap 2835589 2835598 CCACCAACAAGCCAA CGCAG-CCGC ACA GCGGACTGCG ATCGATGATCCGTGC TERM 3108 2836029 - 2836008 - T 70 -7.3 -4.13903 | gap 1, overlap 2836021 TAGACAATGAAATAA TCTCCCGCGA AAA TCGCAGG-GA TACGATCAGCCGCGC Avi_3428 2837385 - 2836063 - | phage integrase protein TERM 3109 2838130 - 2838109 - g 72 -5.1 -4.56702 | gap 1, overlap 2838105 2838110 2838113 CCGGAATGAAACAAA GCGA-CGTCG CCT CGACGCTGGC GATCCAGCGGGCCAA TERM 3110 2838213 - 2838179 - g 72 -9.3 -3.65812 | gap 1, opp_overlap 2838204 CGGGCTGGAAGACAA GGGCCTTAT-CGAGCG CCGT CGCTCGGATACGGACC GCCGCGTCTATTTTC Avi_3429 2837898 - 2838371 + | transcriptional regulator MarR family TERM 3111 2838384 - 2838413 + T 100 -15.1 -3.36671 | opp_overlap 2838384 TAATGGTCAATCAGA CTCAGGTCCGG TGTCATAT CCGGACCTGAG TTATCGCATTGAAAT TERM 3112 2838413 - 2838384 - T 90 -15.1 -2.91199 | opp_overlap 2838384 TAATGGTCAATCAGA CTCAGGTCCGG TGTCATAT CCGGACCTGAG TTATCGCATTGAAAT Avi_3431 2839010 - 2838543 - | hypothetical protein qor 2840063 - 2839101 - | quinone oxidoreductase TERM 3113 2839388 - 2839376 - G 71 -6.9 -4.12188 | overlap 2839379 CCACCAGTCCGAAAA CACGC ACG GCGCG CAGGCTTCCGGCAAG Avi_3433 2840228 - 2841121 + | transcriptional regulator LysR family TERM 3114 2841207 - 2841163 - T 88 -11.6 -3.727 | gap 1, overlap 2841164 2841192 2841195 TCCAGCAGACTTAAA GTGTTACAGCGCCGCACGTTT TATA AAACGCACGGCGCTGCAA-AG AGAGCCTCCCACCGC TERM 3115 2841206 - 2841164 - T 90 -15.1 -2.83299 | gap 1, overlap 2841163 2841192 2841195 CCAGCAGACTTAAAG TGTTACAGCGCCGCACGTTT TATA AAACGCACGGCGCTGCAA-A GAGAGCCTCCCACCG Avi_3435 2842068 - 2841244 - | hypothetical protein Avi_3436 2843048 - 2842083 - | hypothetical protein Avi_3437 2844424 - 2843030 - | hypothetical protein TERM 3116 2844573 - 2844559 - H 82 -2.8 -5.19916 | overlap 2844551 AAAACAGCCAAAAAA CTGG GCGTTCG CCAG CGCTGTGACCAACCT TERM 3117 2845209 - 2845253 + G 73 -11.1 -3.35775 | opp_overlap 2845178 2845203, overlap 2845208 CAAGCAATACTGACG CGGCGCGGACTGCTTGGCGGC ATT GCAGCCACACTGGCCGCACCG TCTTTCGCACATGCT Avi_3439 2845122 - 2846096 + | hypothetical protein Avi_3440 2846741 - 2846175 - | invertase/recombinase protein Avi_3442 2847503 - 2846997 - | hypothetical protein TERM 3118 2847398 - 2847383 - G 87 -6.8 -5.00616 | opp_overlap 2847392, overlap 2847385 CCCCTTCCGAAAAAA CAGCAG CGCG CTGCCG GTAAATACCGGCACC TERM 3119 2847421 - 2847385 - G 80 -9.4 -4.13561 | gap 1, opp_overlap 2847392, overlap 2847383 CCTTCCGAAAAAACA GCAGCGC-GCTGCCGGT AAAT ACCGGCACCTATGCTGC AATCAACAACATGGA TERM 3120 2847786 - 2847825 + H 89 -13.6 -3.16668 | CTTTGCGGCTGAGCT TCGGCGGTCAGCATCC CCACCCCT GCGTGCTGACCGCCGG TTGATCGAAATATTC Avi_3443 2847919 - 2848161 + | hypothetical protein TERM 3121 2848267 - 2848242 - f 100 -16.2 -3.14132 | GTGCCGGCCGAGCAA GGTTCGGCGG TAATAG CCGCCGAACC ACACAACCCCGCCTG TERM 3122 2848599 - 2848630 + G 82 -8.6 -4.48221 | opp_overlap 2848589 2848593, overlap 2848611 ATGAAGCGATCGGCG GCGATGCGACCGTG AAGG CGCTGGTGCATCGC TTTTATCAGTTGATG Avi_3444 2848556 - 2848948 + | hypothetical protein TERM 3123 2849097 - 2849115 + G 85 -11.6 -4.0371 | ATTGCGCTCACCCAT GCCCCCGC CTT GCTGGGGC TTTATCTGGCCGGTG TERM 3124 2849242 - 2849257 + G 73 -11.8 -3.07222 | opp_overlap 2849214 GCCTGTTTCCTATGG CCGCCC CAAC GGGCGG TATTGCGATGATGGT TERM 3125 2849288 - 2849300 + G 72 -4.7 -4.56597 | overlap 2849274 2849289 CGGTTGGGCGCTGTT GGCGC TCG GCGCA TTTTTGCCGCGCAGC Avi_3445 2848953 - 2849318 + | hypothetical protein Avi_3447 2850013 - 2849609 - | hypothetical protein TERM 3126 2851484 - 2851468 - g 70 -12.3 -2.80994 | overlap 2851445 2851446 CGGAAGGCCAGGACA GCCTTGC GAT GCAAGGC GGCAAGATCGCTGTG Avi_3448 2850237 - 2851664 + | glutamate synthase beta chain protein TERM 3127 2852481 - 2852500 + G 70 -4.2 -4.59773 | gap 1, overlap 2852481 2852482 TCGGCGGCATCACCA C-CTGGCGC GAT GCGGCAGAG TTTTTGGCGCTCGGC Avi_3449 2851682 - 2852995 + | dihydroorotate dihydrogenase protein TERM 3128 2853065 - 2853107 + F 100 -17.2 -6.02919 | opp_overlap 2853065 TTAAATTGGCAGCAA CTGAGAGTCTTTCGGGTTCA GAT TGAACCAGACAGATTCTCAG TTTTTTTGTTTGTCA TERM 3129 2853107 - 2853065 - f 95 -15 -3.17714 | opp_overlap 2853065 TTAAATTGGCAGCAA CTGAGAGTCTTTCGGGTTCA GAT TGAACCAGACAGATTCTCAG TTTTTTTGTTTGTCA TERM 3130 2854234 - 2854209 - g 81 -12.5 -3.53012 | opp_overlap 2854209 TTGCCGTGCTTGAAA CCGAGCCGGAC ATGA GTCAGGCCCGG TTTTCCGCCATTGGC TERM 3131 2854209 - 2854234 + G 82 -10.3 -4.11484 | opp_overlap 2854209 TTGCCGTGCTTGAAA CCGAGCCGGAC ATGA GTCAGGCCCGG TTTTCCGCCATTGGC Avi_3451 2853956 - 2856685 + | GGDEF family protein TERM 3132 2857248 - 2857237 - g 74 -7.2 -4.37886 | opp_overlap 2857244 TGATGCGCCAGAAAA CCCG TGGC CGGG TGATGGTCAGCCTGG Avi_3452 2856810 - 2857763 + | membrane protein Avi_3453 2858419 - 2857778 - | transcriptional regulator TetR family amaB 2858743 - 2859972 + | N-carbamoyl-beta-alanine amidohydrolase Avi_3456 2860041 - 2860568 + | hypothetical protein dht 2860788 - 2862242 + | dihydropyrimidinase Avi_3458 2862783 - 2863574 + | ABC transporter nucleotide binding/ATPase protein (nitrate) Avi_3459 2863564 - 2864430 + | ABC transporter TERM 3133 2865028 - 2865041 + G 70 -3.7 -4.65263 | opp_overlap 2865017 TCAAGCTCCGGCTTC CCGCC GCCT GGCCG TTTATTTTCAACGCT Avi_3460 2864427 - 2865293 + | ABC transporter membrane spanning protein TERM 3134 2865511 - 2865488 - g 75 -9.6 -3.8591 | overlap 2865466 2865508 TTCTATAAGGAAGAA GGCCTTGATG TGGA CATCAAGCCC GGCGGCCCGGACATT TERM 3135 2865862 - 2865850 - g 75 -9.1 -4.07568 | opp_overlap 2865850 2865849 TCCGTTGTTGCAAAA GCAGG CGG CCTGC ATTTCCACCATGACC Avi_3461 2865326 - 2866318 + | ABC transporter substrate binding protein (nitrate/sulfonate/taurine/bicarbonate) Avi_3463 2866966 - 2868102 + | HlyD family secretion protein TERM 3136 2870024 - 2869999 - g 78 -8.9 -4.15222 | opp_overlap 2869996 ACCGTGGTCAACAAA CTGATCGGCGG CCTG CCGCTGATCGG CCCTTACCTGCCGAA Avi_3464 2868115 - 2871420 + | Acr family transporter TERM 3137 2871489 - 2871446 - f 75 -11.8 -3.10935 | opp_overlap 2871454 2871481, overlap 2871454 ATTGAAAATGACAGA TCCCACAAGGCGATACGGCA GCCA TAGCGTATCGCCTTGTGCCA GGTTCGGTTTTCCAT TERM 3138 2871481 - 2871454 - f 76 -10.6 -3.35934 | opp_overlap 2871454, overlap 2871446 TGACAGATCCCACAA GGCGATACGGCA GCCA TAGCGTATCGCC TTGTGCCAGGTTCGG Avi_3466 2871771 - 2872478 + | regulator of Biofilm formation Fnr Family Avi_3467 2873468 - 2872650 - | metal dependent hydrolase ureG 2874081 - 2873470 - | urease accessory protein UreG ureF 2874828 - 2874136 - | urease accessory protein ureE 2875392 - 2874835 - | urease accessory protein Avi_3471 2876222 - 2875494 - | GGDEF family protein TERM 3139 2876593 - 2876561 - R 88 -12.8 -3.68351 | opp_overlap 2876569, overlap 2876569 CGCGCATCACCGAAA CGAAAAAACCCGGC ACGCA GCCGGGTTTTTCTG GTCACGCAGACGTGT TERM 3140 2876585 - 2876569 - R 100 -10.8 -5.38497 | opp_overlap 2876569, overlap 2876561 ACCGAAACGAAAAAA CCCGGC ACGCA GCCGGG TTTTTCTGGTCACGC TERM 3141 2876569 - 2876585 + r 100 -10.8 -4.91109 | opp_overlap 2876569 2876561 ACCGAAACGAAAAAA CCCGGC ACGCA GCCGGG TTTTTCTGGTCACGC Avi_3473 2877190 - 2876651 - | hypothetical protein TERM 3142 2877335 - 2877308 - H 74 -6.4 -4.46212 | gap 1, overlap 2877289 2877287 2877310 CGGCGCAGCATAAAA CAG-CATGCTG GACGCCG CAGCATGCCTG ACATGCGCATAGTGC TERM 3143 2877332 - 2877310 - H 76 -9.2 -3.84183 | overlap 2877289 2877287 2877308 GCGCAGCATAAAACA GCATGCTG GACGCCG CAGCATGC CTGACATGCGCATAG TERM 3144 2878608 - 2878620 + G 72 -9.1 -3.93695 | opp_overlap 2878606 AAGTGCTGAAAATCC TGCGC AAT GCGCA TTTCTCGCTGCTGAC Avi_3475 2877785 - 2879068 + | glycosyltransferase protein TERM 3145 2879171 - 2879195 + T 72 -9.9 -3.37091 | opp_overlap 2879168 2879172, overlap 2879168 ATTTAAAGGGAAGGT AGAGGTGGGCT ATC AGCCCACCACA TTCGCTTTTCCGCCT TERM 3146 2879194 - 2879172 - T 81 -13.4 -2.58812 | opp_overlap 2879171 2879168, overlap 2879168 TTTAAAGGGAAGGTA GAGGTGGGCT ATC AGCCCACCAC ATTCGCTTTTCCGCC Avi_3476 2879749 - 2879183 - | hypothetical protein TERM 3147 2879699 - 2879680 - G 72 -8.6 -3.83568 | opp_overlap 2879696 GCAGACCGACAAGAA CTTGCAGA CTGT CCTGCAAG AAGGCTTGATTTTCA TERM 3148 2879870 - 2879832 - R 81 -9 -4.13728 | overlap 2879836 GAGATATTTGCAAAA GGAATACGATGAACCATT TTC AATGACTCATCGTATAAC TCCCATCAAAACAAG TERM 3149 2879866 - 2879836 - R 88 -12.8 -3.67622 | overlap 2879832 TATTTGCAAAAGGAA TACGATGAACCATT TTC AATGACTCATCGTA TAACTCCCATCAAAA TERM 3150 2879907 - 2879889 - R 75 -5.2 -4.70107 | overlap 2879891 CATCAAAACAAGAAA TACCGCTG TGC CATCGGCA AAACAGTGGCCGGTT ureC 2881588 - 2879876 - | urease alpha subunit TERM 3151 2880025 - 2880035 + g 80 -4.6 -5.00616 | opp_overlap 2880023, overlap 2880023 ACGCCTTGGAAATGC CGCC GCG GGTG TTTTTTACCGCCAGC Avi_3478 2882235 - 2881591 - | urease accessory protein Avi_3481 2882661 - 2882251 - | hypothetical protein ureB 2882963 - 2882658 - | urease beta subunit Avi_3484 2883312 - 2883058 - | hypothetical protein ureA 2883619 - 2883317 - | urease gamma subunit ureD 2884479 - 2883643 - | urease accessory protein TERM 3152 2883884 - 2883872 - G 71 -6.9 -4.11751 | overlap 2883858 2883876 AGCAATGTGGCAAAA GCGAC CCT GCCGC CCAGCACCGCTTTTT Avi_3487 2885482 - 2884484 - | hypothetical protein TERM 3153 2885565 - 2885542 - R 88 -2.5 -5.46698 | gap 1 TGCAAAATGAAAAAA TCTGGCACAT GCTGG ATGCGC-AGA CGAGTGTCTGTCAGG TERM 3154 2885603 - 2885569 - R 76 -12.2 -2.62983 | overlap 2885592 2885601 TGGATGCGCAGACGA GTGTCTGTCAGGGTCA GAT CGAACCTGACAGACAG AACCTAAGGCATCTG Avi_3488 2886976 - 2885633 - | hypothetical protein TERM 3155 2886958 - 2886939 - G 74 -2.7 -5.00616 | opp_overlap 2886940, overlap 2886940 GTTCGCGCGAAAAAA CCCGGCC GCCGCA GGCCAGT CAGTTCATCGAATGT Avi_3489 2887873 - 2887178 - | ABC transporter Avi_3490 2888640 - 2887885 - | ABC transporter nucleotide binding/ATPase protein (urea/amide) TERM 3156 2887959 - 2887934 - G 70 -2.5 -4.86731 | gap 1 TCGTTCGAAACAAAA TCGAT-CGAGCC TTC GGCCAGCACCGA GCCTTCGGCCAGACA TERM 3157 2888190 - 2888200 + g 72 -4.6 -4.57073 | CGTGGGACAGGTTGG CGGC GAG GTCG TTTTTGCGGGCGGTG Avi_3491 2889804 - 2888644 - | ABC transporter membrane spanning protein (urea/amide) Avi_3492 2891429 - 2889801 - | ABC transporter membrane spanning protein (urea/amide) TERM 3158 2891496 - 2891470 - R 100 -15.9 -4.93318 | opp_overlap 2891468 2891467 GACAAGGGAGAAAAA GCTGCGGATGC TTTAT GCACCCGCAGC AAGTTTCAGGCTGGG Avi_3494 2892805 - 2891516 - | ABC transporter substrate binding protein (urea/amide) Avi_3495 2893086 - 2893667 + | heme oxygenase protein Avi_3496 2893645 - 2896203 + | bacteriophytochrome protein TERM 3159 2896257 - 2896215 - T 100 -25.1 -3.69083 | opp_overlap 2896221, overlap 2896221 CTAACATAGAGAGAA GCGAAAGCCTGTCTGGTTC AATCA GAACCTGACAGGCTTTCGC GGATATCCCGGACTA TERM 3160 2896221 - 2896251 + T 100 -15.5 -3.56643 | opp_overlap 2896215 2896221 TAGAGAGAAGCGAAA GCCTGTCTGGTTC AATCA GAACCTGACAGGC TTTCGCGGATATCCC TERM 3161 2896251 - 2896221 - T 100 -15.5 -3.84394 | opp_overlap 2896221, overlap 2896215 TAGAGAGAAGCGAAA GCCTGTCTGGTTC AATCA GAACCTGACAGGC TTTCGCGGATATCCC Avi_3497 2897127 - 2896297 - | aspartyl/asparaginyl beta-hydroxylase TERM 3162 2896723 - 2896747 + g 73 -11.3 -3.37245 | overlap 2896706 GGGAATGGCCTGCAT GGCCTTCCAGG TTT CCGGGCAGGCC TTGATATTGGCCTCG Avi_3498 2897425 - 2900802 + | two component sensor kinase Avi_3499 2901073 - 2902011 + | transcriptional regulator LuxR family TERM 3163 2902559 - 2902546 - f 71 -9.5 -3.48593 | opp_overlap 2902556 GATGTTGGGATAGAA GCGGC AATC GCCGC ACAGATGCGAGTATT Avi_3501 2902709 - 2903242 + | hypothetical protein Avi_3502 2903822 - 2903337 - | protein kinase C substrate protein TERM 3164 2903884 - 2903848 - R 77 -8.8 -4.09685 | gap 1, opp_overlap 2903848, overlap 2903851 TCCCACGCTGGAAAA CGAGCGATCACCAGAGA ACTG TCTCTGGTGATCGGG-G AGTTCGTAAGCCGGT TERM 3165 2903882 - 2903851 - R 100 -16 -3.08508 | opp_overlap 2903848, overlap 2903848 CACGCTGGAAAACGA GCGATCACCAGAGA ACTG TCTCTGGTGATCGG GGAGTTCGTAAGCCG TERM 3166 2903999 - 2904037 + r 81 -6.7 -4.59773 | gap 1, opp_overlap 2903980 2903998, overlap 2904001 ACCGTATAGACACAG TTCACCGCCTCAGCCACA AACC TATGGCTGAGG-GGTGTC TTTTTAACGATCGAC TERM 3167 2904001 - 2904035 + r 100 -13.7 -3.91506 | gap 1, opp_overlap 2903980 2903998, overlap 2903999 CGTATAGACACAGTT CACCGCCTCAGCCACA AACC TATGGCTGAGG-GGTG TCTTTTTAACGATCG TERM 3168 2904261 - 2904277 + r 81 -10.9 -3.65046 | opp_overlap 2904261 CGTTCGTCAGTACAA TCGATCC ACT GGATCGA TTGTTCGGCTGCGCC TERM 3169 2904277 - 2904261 - R 76 -10.9 -3.40403 | opp_overlap 2904261 CGTTCGTCAGTACAA TCGATCC ACT GGATCGA TTGTTCGGCTGCGCC pemK 2904804 - 2904493 - | plasmid stable inheritance protein K pemI 2905081 - 2904824 - | plasmid stable inheritance protein I Avi_3505 2906155 - 2905175 - | hypothetical protein TERM 3170 2906741 - 2906759 + r 74 -8.2 -3.97674 | opp_overlap 2906736 2906740 AAAGGAGAAGCCAAT TTCGTTTG GAC CAAGCGAA TTGTTTACGTGATCA TERM 3171 2907061 - 2907038 - R 100 -11 -4.95302 | overlap 2907047 TGAAATACAAGAAAA GCCGCAAAGC ATCC ACTCTGCGGC TGTAAAATCTCACAC minE 2907373 - 2907113 - | cell division topological specificity factor minD 2908185 - 2907370 - | cell division inhibitor minC 2909118 - 2908318 - | bacterial septum site-determining protein TERM 3172 2909316 - 2909298 - R 100 -13.1 -4.74103 | opp_overlap 2909298 CGTGCAATGCAAAAA GCCCGGC GCAAG GCCGGGC TTTCGTCTCCACTGG TERM 3173 2909298 - 2909316 + r 100 -13.1 -3.83998 | opp_overlap 2909298 CGTGCAATGCAAAAA GCCCGGC GCAAG GCCGGGC TTTCGTCTCCACTGG Avi_3510 2910462 - 2909347 - | ABC transporter substrate binding protein (amino acid) Avi_3511 2910949 - 2910596 - | hypothetical protein TERM 3174 2910957 - 2910967 + r 77 -8.2 -4.03995 | CCCTGCATGTCTTTT CCCC TCC GGGG TCTTTTTATCCGCAG Avi_3512 2911735 - 2911004 - | ABC transporter nucleotide binding/ATPase protein TERM 3175 2911145 - 2911183 + g 93 -12.5 -4.25056 | TGCAAACGCATTCTG CTCGACCAGGAACACGG TCAGC CCCTCTTCCTGGTTGAG TTTCTTGATCGCCTC Avi_3513 2912610 - 2911732 - | ABC transporter nucleotide binding/ATPase protein TERM 3176 2912317 - 2912329 + g 93 -9.1 -4.79223 | ATTCTGGAAGGTTCT GGCCA CCT TGGCC TTTTTGGTGATCTCG Avi_3514 2913998 - 2912607 - | ABC transporter membrane spanning protein (branched chain amino acid) TERM 3177 2913844 - 2913874 + g 79 -12.6 -3.24825 | opp_overlap 2913846 2913848, overlap 2913841 CCCCAGCGCGTATAC CAGACCAGGGCATT GTT GATGTCCTGGTCGG TCTTGATTCCGATGA livH 2914905 - 2914003 - | ABC transporter membrane spanning protein TERM 3178 2914770 - 2914756 - G 75 -9.2 -3.83403 | CAAAAAAACAATCAA GGCGGC AAA ACCGCC GAGCATGAAAATATC Avi_3517 2915794 - 2915168 - | transcriptional regulator protein Avi_3518 2916112 - 2917317 + | MFS permease TERM 3179 2917450 - 2917425 - f 70 -9.7 -3.14218 | overlap 2917422 2917423 2917427 TATGCAGTAAAACGA GAGGGCAAGCA TTGC CGCTTGCCCTT GACAGCTCCTGTTTA TERM 3180 2917448 - 2917427 - f 79 -12.3 -3.12521 | overlap 2917425 2917422 2917423 TGCAGTAAAACGAGA GGGCAAGCA TTGC CGCTTGCCC TTGACAGCTCCTGTT TERM 3181 2917507 - 2917490 - f 78 -5.5 -4.74504 | opp_overlap 2917493 ATTGCAAGCTAAAAA GCTGTGC GCAT GCATAGC GATGCTGCCCGCCTT TERM 3182 2917603 - 2917631 + F 70 -5.4 -4.30014 | opp_overlap 2917603, overlap 2917605 TATTTAACTTTCAAA TGCCTCAAAC CACTGATAA GTTTGAGGTA TTTTACATTGATCAA Avi_3519 2917796 - 2918425 + | adenylate sulfate kinase protein pssB 2918499 - 2919281 + | exopolysaccharide production protein PssB TERM 3183 2919390 - 2919435 + F 83 -9.7 -4.08767 | gap 1, overlap 2919391 GATAATGGCGCGAGC CCTGGAGCCTGGCCTA-CCGAT TCC ATCGGCTCAGCTAGGCTCCGGA TTTTGACAGGATGCG TERM 3184 2919391 - 2919434 + F 83 -13.2 -3.05046 | gap 1, overlap 2919390 ATAATGGCGCGAGCC CTGGAGCCTGGCCTA-CCGAT TCC ATCGGCTCAGCTAGGCTCCGG ATTTTGACAGGATGC TERM 3185 2920033 - 2920001 - g 73 -11.3 -3.40625 | opp_overlap 2919995 2919994, overlap 2919995 2919989 AAAGCAATACAGCAA CGCTGCTTTACCAAT CCA ATTGGCAAGGCCGCG CCGAAATGGGGCTGG Avi_3522 2919538 - 2920548 + | hypothetical protein TERM 3186 2920820 - 2920779 - f 71 -10.9 -2.89081 | gap 1, overlap 2920771 2920778 CACGCAACCAAGAAT CTGGAACAGTCGACACCGGT ATA ATCGGC-TCGGCTGCTCCAG GAGGGACGAGGCTGG TERM 3187 2921127 - 2921075 - g 76 -7 -4.4891 | gap 1, overlap 2921076 2921089 2921123 GCGACCAGCAGAAAA TCCGC-ATCTACAAATTCCGCACCA TGTA TGCTGCGGAATGTGACGATAGCGGC GTGCGGCAAACCACC TERM 3188 2921112 - 2921089 - g 75 -9.6 -3.92075 | overlap 2921076 2921075 ATCCGCATCTACAAA TTCCGCACCA TGTA TGCTGCGGAA TGTGACGATAGCGGC TERM 3189 2921410 - 2921427 + G 78 -7.7 -4.55689 | opp_overlap 2921402 GCCAAAGCCCGCGCC CGGATCG CCGC CGATCTG TTTTATGTGGATAAT Avi_3523 2920837 - 2921517 + | exopolysaccharide production protein Avi_3524 2922069 - 2922344 + | hypothetical protein TERM 3190 2922497 - 2922454 - T 100 -15.6 -3.33696 | opp_overlap 2922461 2922470, overlap 2922461 CCTGCCTTGAAGGAA TTGCAAATATCTCAGATGCC TCAG GGTATTTGAGATATTTGCAA AGCCCTACGATCAGC TERM 3191 2922461 - 2922490 + T 78 -10.9 -3.53444 | opp_overlap 2922461 2922454, overlap 2922470 TGAAGGAATTGCAAA TATCTCAGATGCC TCAG GGTATTTGAGATA TTTGCAAAGCCCTAC TERM 3192 2923022 - 2922997 - T 95 -12.7 -4.25104 | gap 1 GGTCGCGGATGAAAA GGCCGTTC-CAT TCC ATGTGAACGGCC AGGCAATGAAACCAT Avi_3526 2923446 - 2923096 - | hypothetical protein TERM 3193 2923567 - 2923555 - H 86 -4.1 -5.4505 | overlap 2923556 GGCGTTAACAAAAAA CTACC TTT GGTAA CCTTTCGTTTACGGG ctrA 2923892 - 2924593 + | two component response regulator TERM 3194 2924636 - 2924613 - T 76 -11 -3.28712 | GGTTTGTCGTTACAA CGGGGCGTTA TTCG TAACGCCTCG CCGTAAATCCCCACC TERM 3195 2924690 - 2924708 + T 100 -10.2 -5.15969 | opp_overlap 2924690 TATGATCTCAAAAAA GTCCCTGC ATT GCCGGGAC TTTTTTGCGTTGAAG TERM 3196 2924708 - 2924690 - T 100 -10.2 -5.06451 | opp_overlap 2924690 TATGATCTCAAAAAA GTCCCTGC ATT GCCGGGAC TTTTTTGCGTTGAAG petR 2925197 - 2924838 - | two component response regulator TERM 3197 2925290 - 2925270 - R 74 -10.3 -3.53779 | opp_overlap 2925269 2925267 2925270, overlap 2925264 2925266 TTTCCAAAAGAGCAA GCGGCGCGC CCC GTGCACCGC GTCTTTACCCATTGT TERM 3198 2925465 - 2925431 - R 72 -11.2 -3.05384 | opp_overlap 2925428 CTGGTGGGGACGGAA TGCGGCGCCCGAAGCC TGA GACACCGGGCGCCGTC GAGCATCTTTATGCG Avi_3529 2926134 - 2925484 - | hypothetical protein Avi_3530 2926314 - 2926901 + | hypothetical protein Avi_3531 2927065 - 2927787 + | hypothetical protein Avi_3532 2927784 - 2928092 + | hypothetical protein Avi_3534 2928989 - 2928150 - | RNA methylase Avi_3535 2929382 - 2929002 - | hypothetical protein rluD 2929463 - 2930491 + | ribosomal large subunit pseudouridine synthase RluD subfamily Avi_3537 2930528 - 2931811 + | oxidoreductase TERM 3199 2932241 - 2932230 - g 80 -4.4 -5.0133 | CAGGCTGTCAAAAAA TTCG ATCC CGAA CGCGGCTTCCGGCTT rpoH 2931954 - 2932856 + | alternative sigma factor RpoH TERM 3200 2933182 - 2933197 + G 75 -5.4 -4.62622 | opp_overlap 2933170 CAATGGAAAGCCCTT CCCAAT TGGC GTTGGG TTTCTTTGTCATTCA Avi_3539 2933115 - 2933696 + | ABC transporter membrane spanning protein arsB 2935028 - 2933754 - | arsenical pump membrane protein Avi_3541 2935203 - 2936498 + | MFS permease TERM 3201 2936581 - 2936533 - T 100 -16.2 -4.24075 | overlap 2936535 2936537 ATTCATCAATAGAAA TAGACAGGGCATATCCGTGTTT GCACG AAACACGGATATGCCCTGGTGA CATCTCAGATCAGAC TERM 3202 2936579 - 2936535 - T 100 -18.8 -3.71627 | overlap 2936533 2936537 TCATCAATAGAAATA GACAGGGCATATCCGTGTTT GCACG AAACACGGATATGCCCTGGT GACATCTCAGATCAG TERM 3203 2936577 - 2936537 - T 100 -25.8 -3.42943 | overlap 2936535 2936533 ATCAATAGAAATAGA CAGGGCATATCCGTGTTT GCACG AAACACGGATATGCCCTG GTGACATCTCAGATC TERM 3204 2936601 - 2936617 + T 79 -10.1 -3.81951 | TCAGATCAGACGCTG CTCGGCT CAA GGCCGAG TTTAGTCGTCTGCGA Avi_3542 2938786 - 2936639 - | hypothetical protein TERM 3205 2937730 - 2937749 + g 70 -4.2 -4.65895 | gap 1, overlap 2937730 2937733 AATTGCTTCGGTCTG GCG-CGGCG GCG CGCTGTTGC TTTTTAGCTGCCGCC TERM 3206 2938544 - 2938515 - G 82 -13.5 -3.31144 | opp_overlap 2938495 2938498 2938506 2938506 GGCTCAGGTTCATAA GCCGGTGCTGGTT CATA AACCGGCTCCGGC TCATAGACATCCTCT purA 2940144 - 2938846 - | adenylosuccinate synthetase TERM 3207 2939295 - 2939275 - G 88 -11.1 -4.15044 | TTTTTCCCCAAGAAA CTGGCCGAC CTC GTCGGTCAG CTCGGTCGGGAACGG TERM 3208 2940480 - 2940423 - H 73 -11.5 -2.79452 | opp_overlap 2940438 2940440, overlap 2940422 2940438 2940469 ACGGTGCAACACAAT TTTACGATTGCATAATTCCTGAAATCG ATTC CGGTTTCAGGAATTATGCAGTAGTCAC ACTGCATCGAAATTG TERM 3209 2940438 - 2940465 + H 95 -13.6 -3.34043 | opp_overlap 2940422 2940423 2940438, overlap 2940440 TTTACGATTGCATAA TTCCTGAAATCG ATTC CGGTTTCAGGAA TTATGCAGTAGTCAC TERM 3210 2940465 - 2940438 - H 80 -11.4 -3.34043 | opp_overlap 2940438 2940440, overlap 2940422 2940423 TTTACGATTGCATAA TTCCTGAAATCG ATTC CGGTTTCAGGAA TTATGCAGTAGTCAC Avi_3545 2940522 - 2941415 + | hypothetical protein prp1 2942204 - 2941425 - | serine/threonine protein phosphatase I TERM 3211 2941831 - 2941817 - G 74 -7 -4.29106 | TGCCATAGGAATAAA GCGTGG CCG CCGCGC CGAAATCCAGCCAGC TERM 3212 2943007 - 2942987 - g 74 -6.8 -4.30576 | TTCCGAGCATGAAAA CCGCTATG GCATT CATGGCGG CGAAGTGGAAACCTC Avi_3547 2942508 - 2943308 + | creatinine amidohydrolase Avi_3548 2944249 - 2943293 - | transcriptional regulator LysR family TERM 3213 2943648 - 2943673 + g 93 -9.7 -4.72272 | gap 1 ATGACATTGCGCAGG CTGGTGCCAGGC TCG GCCAG-CACCAG TTTTTCCTGCACCAC Avi_3549 2944489 - 2945508 + | ABC transporter substrate-binding protein TERM 3214 2945552 - 2945528 - f 72 -11.4 -2.53228 | overlap 2945527 2945525 2945523 2945546 GAAGAAGCAAGACAG GGCGGCGC ACCGGATAA GCGCCGCC ACAGCATCCGGATGA TERM 3215 2945705 - 2945739 + F 90 -7.8 -5.011 | overlap 2945707 GAGAGCCAGCAGTAG CGGGATGATGAGGATG CTC CTTCCTCCTCATCCTA TTTTCTTGTTTGCGT TERM 3216 2945707 - 2945737 + F 95 -12.6 -4.11503 | overlap 2945705 GAGCCAGCAGTAGCG GGATGATGAGGATG CTC CTTCCTCCTCATCC TATTTTCTTGTTTGC Avi_3551 2945709 - 2946683 + | ABC transporter nucleotide binding/ATPase protein Avi_3552 2946680 - 2947537 + | ABC transporter membrane spanning protein Avi_3553 2947534 - 2948868 + | cytosine deaminase protein Avi_3554 2948872 - 2950278 + | hypothetical protein TERM 3217 2950482 - 2950463 - f 93 -10.6 -4.37092 | overlap 2950441 2950440 ATGTTTTTGACAAAA CCCTCCGG GGCA CCGGCGGG CGCAAACCAGGGACT Avi_3555 2950503 - 2951084 + | NAD(P)H dehydrogenase protein Avi_3556 2951810 - 2951094 - | two component sensor kinase TERM 3218 2951884 - 2951859 - R 100 -16.1 -5.15969 | CTCCAACGCAAAAAA GCCCCACTGGC GTAA GCCGGTGGGGC AAGATGACTGGAGAG Avi_3557 2952311 - 2951910 - | hypothetical protein TERM 3219 2952472 - 2952453 - R 93 -2.2 -5.74122 | CAGTATACAAAAAAA CCAAAAAT ACTC ATTTTTTG AAATGTAAAGAAATG TERM 3220 2952555 - 2952523 - R 81 -12.1 -3.24021 | overlap 2952518 2952516 2952526 TTTCTAAACACGGAA TTATTCCGGCTCGAC AAA ATCAAGCCGGAAAAA ATTCAAAATGATTTA TERM 3221 2952552 - 2952526 - R 85 -13.8 -2.80438 | overlap 2952518 2952516 2952523 CTAAACACGGAATTA TTCCGGCTCGAC AAA ATCAAGCCGGAA AAAATTCAAAATGAT Avi_3558 2952947 - 2952558 - | hypothetical protein Avi_3559 2954371 - 2952944 - | aldehyde dehydrogenase TERM 3222 2954215 - 2954202 - G 75 -5.2 -4.7173 | overlap 2954204 GACCACAGCGAAAAA CGGG TGAAAG CCCG CTTGGCAGCCGCCAC ung 2955283 - 2954582 - | uracil-DNA glycosylase TERM 3223 2954678 - 2954666 - G 75 -9.1 -4.07568 | opp_overlap 2954666 GTTGGCTTTGGAAAA CGGCT TTG AGCCG AAAAAGCCGTTATGG TERM 3224 2955061 - 2955041 - G 76 -6.8 -4.52589 | overlap 2955044 GGGCTGGACAGAAAA GCACAGGC CGTGC GCCTGTCC TGCGCCGTGATAGGG Avi_3561 2956106 - 2955309 - | aldolase TERM 3225 2956224 - 2956245 + H 77 -5.8 -4.72272 | TCCCCTTTGCCTCTA CCTCATCC ACCAAG GGAAGAGG TTTTTAATGGCACGC Avi_3563 2956252 - 2957205 + | hypothetical protein Avi_3564 2959090 - 2957165 - | bifunctional enzyme including aminotransferase and chitin synthase protein TERM 3226 2957874 - 2957861 - G 71 -8.1 -4.07568 | CTCGTCTTGCCAAAA CCCTG ATGT CAGGG AGACAAGCAGGGCCA TERM 3227 2959050 - 2959022 - G 70 -11.8 -2.71731 | overlap 2959024 2959026 2959038 GTCATCCTGCAACGA GACAGGC-GCGCGC AAA GCG-GCAGCCTGTC CGGCTGCACTGTCAC TERM 3228 2959178 - 2959168 - R 72 -8.2 -3.7941 | CAGGCTCTAGAACAA CGCC AGA GGCG CAAAGCCCTGTGCGG Avi_3565 2960391 - 2959159 - | hypothetical protein Avi_3566 2962428 - 2960422 - | hypothetical protein TERM 3229 2962405 - 2962383 - G 70 -4.8 -4.53685 | opp_overlap 2962386, overlap 2962386 AAAGGACAAGCAAAA CCATCGGC AAAACAA GCCGATTG AATAAACAATTCGCG TERM 3230 2962632 - 2962615 - H 71 -2.1 -4.90477 | opp_overlap 2962629, overlap 2962627 2962629 CACAAAAAATTAAAA TATATAT AGCA ACATATA TGAATATATATATTT TERM 3231 2963249 - 2963228 - g 75 -12.3 -3.28712 | CGTGCTGCGCCAGAA GGTGACCAC CGAT GTGGCCACC AAAGGCGGCCAGTAT Avi_3567 2963028 - 2964347 + | ABC transporter substrate binding protein (sorbitol) TERM 3232 2964822 - 2964834 + G 80 -4.7 -5.0133 | TTACGAATATTTCCT CACCG ATC CGGCG TTTTTTGCAGCCCTC TERM 3233 2964962 - 2964975 + G 76 -4.5 -4.77036 | overlap 2964963 GCATTGTCCGCATTC TGGTG ATTT CACCG TTTTTCATCATGCCA Avi_3568 2964643 - 2965515 + | ABC transporter membrane spanning protein (sorbitol/mannitol) TERM 3234 2965654 - 2965631 - g 90 -11.8 -4.12188 | gap 1, opp_overlap 2965631 2965632 2965652 TCACCAGTTTCAAAA GCGAGGGCGAT GCT ATCGC-CTCGC CTCCGGTGTTTTTGT TERM 3235 2965652 - 2965662 + G 86 -4.6 -5.29445 | opp_overlap 2965631, overlap 2965632 2965631 GCGATGCTATCGCCT CGCC TCC GGTG TTTTTGTTCTTCCAC Avi_3569 2965519 - 2966349 + | ABC transporter membrane spanning protein (sorbitol/mannitol) TERM 3236 2966728 - 2966700 - g 87 -7.4 -4.89852 | CGAGATTGACAAAAA GGTCACGGATGC CGCCC GCATCCTCAACC TCACGGATTATCTCG Avi_3570 2966362 - 2967360 + | ABC transporter nucleotide binding/ATPase protein (sorbitol/mannitol) Avi_3571 2967357 - 2968133 + | dehydrogenase TERM 3237 2968344 - 2968310 - f 80 -11.5 -3.33162 | overlap 2968311 CATGGGACCGTACAA CCTGCC-TCTTCTCCCC AGC GGGGAGAAGGTGGC-GG CAGCCGGATGAGGGG TERM 3238 2968344 - 2968311 - f 73 -11.7 -2.59683 | gap 1, overlap 2968310 ATGGGACCGTACAAC CTGCC-TCTTCTCCCC AGC GGGGAGAAGGTGGCGG CAGCCGGATGAGGGG TERM 3239 2969765 - 2969749 - g 78 -3.6 -5.00884 | opp_overlap 2969762 2969762 AGCGTCTGCAAAAAA CCGCCA TTGCC TCGCGG CAAGATCCGCTGCTA TERM 3240 2969837 - 2969853 + G 74 -10.9 -3.57561 | TGAAGTGTTCAGGCA GCGCTTT GCA AAAGCGC TTTCACACCTTCGCA mtlK 2968440 - 2969927 + | mannitol 2-dehydrogenase Avi_3573 2969939 - 2970613 + | hypothetical protein TERM 3241 2971336 - 2971312 - g 86 -12.1 -4.07568 | opp_overlap 2971332 TTGCGGTCGGCAAAA GCGTCGGCACC CTC AGCACCGACGC TGCGGACGCGCTGGG Avi_3574 2970639 - 2972210 + | ribitol kinase trmU 2972422 - 2973630 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 3242 2973670 - 2973688 + F 100 -11 -5.2696 | opp_overlap 2973670 2973668 TCACATAATGCAACA GGACCGTT ACC AGCGGTCC TTTTTTGCATTTTGC TERM 3243 2973893 - 2973906 + F 81 -4.5 -5.07652 | opp_overlap 2973893 2973894, overlap 2973894 CCAGACCTTTAAATA TCAGC CATG GCTGG TTTTATTTTGGCGAC TERM 3244 2973948 - 2973990 + F 72 -7 -4.18018 | opp_overlap 2973984 2973985, overlap 2973952 CCGGCATCTACTTCA CTGAGAGTCTGTCAGGTTTA GAT TGAGCCAGACAAACTCTAGG TTTTCCCTGAAAACC TERM 3245 2974029 - 2974004 - f 70 -7 -4.07568 | opp_overlap 2974004, overlap 2973985 2973984 GGTTTTCCCTGAAAA CCTCTAAAAG CTCTAT CTTTTAAAGG CATTTTTAAACAAAT fhuA 2974161 - 2976317 + | hydroxamate-type ferrisiderophore receptor TERM 3246 2976353 - 2976378 + T 100 -16.9 -4.59773 | opp_overlap 2976349 CACAAATCAACTGGA CCGGCGGCTTC GAAA GAAGTCGCCGG TTTTTGCACGTGCCG Avi_3578 2976883 - 2976503 - | hypothetical protein fhuB 2978935 - 2976956 - | ABC transporter TERM 3247 2978131 - 2978113 - G 90 -11.6 -4.371 | overlap 2978115 TCGACCAGACCAAAA GCGCGCCG GAG CGCCGCGC GCCGGTCAACCGGGC TERM 3248 2978236 - 2978205 - G 72 -9.4 -3.72576 | gap 1, overlap 2978175 GCGCTGGTGACGAAA GCCGCCAGCAGCACC GCA AGCG-TGATGGCGGC GGCGCGCAGATGGCC fhuD 2979765 - 2978932 - | ABC transporter substrate binding protein (ferrichrome) TERM 3249 2979053 - 2979068 + g 83 -8.2 -4.56597 | TTTGCCATCGGCAAG GCCTGC CAGA GCGGGC TTTTTGCCAGCACCG fhuC 2980636 - 2979821 - | ABC transporter nucleotide binding/ATPase protein (ferrichrome) TERM 3250 2979937 - 2979918 - G 75 -10.6 -3.72576 | opp_overlap 2979916 TCGCGGGTCATCAAA GCCGTGGG GGAG CCCTCGGC AATCAATTGCCCGGC TERM 3251 2980395 - 2980374 - G 71 -7.9 -4.07687 | gap 1, overlap 2980375 ACCTTGCGGGCAAAA TCGCGCGCGC CAA GCGCGC-CGG CATCCGCCCCGGCAA Avi_3583 2980829 - 2981710 + | transcriptional regulator AraC family Avi_3585 2981989 - 2984145 + | ferrichrome iron receptor TERM 3252 2984163 - 2984195 + T 76 -11.2 -3.28924 | opp_overlap 2984159 2984161 2984162, overlap 2984167 TTTTATCAGAACACC TATCGCGCCGCCTG CACCA CAGGCGGCGCTGGA TTATCGCAACAGATC TERM 3253 2984167 - 2984191 + T 100 -18.6 -2.59431 | opp_overlap 2984159 2984161 2984162, overlap 2984163 ATCAGAACACCTATC GCGCCGCCTG CACCA CAGGCGGCGC TGGATTATCGCAACA Avi_3586 2984921 - 2984196 - | hypothetical protein Avi_3587 2985225 - 2985809 + | hypothetical protein TERM 3254 2986305 - 2986284 - T 100 -12.3 -5.14563 | opp_overlap 2986283 CGGCGCATGAAAAAA CCCCCGATC TTGC GATCGGAGG CTCTCATAACTCTTG Avi_3590 2987157 - 2986345 - | hypothetical protein Avi_3592 2988603 - 2987599 - | Cytochrome bd type quinol oxidase subunit 2 protein Avi_3593 2990011 - 2988593 - | Bacterial cytochrome ubiquinol oxidase subunit 1 transmembrane protein TERM 3255 2990160 - 2990199 + r 100 -19.4 -3.14344 | opp_overlap 2990161 2990166, overlap 2990166 ATAGAACGCCAGACA ACAAAAGCCCGGCAGGGA TTTC TCCATGCCGGGCTTTTGC TTGGTAAAAAGACTG TERM 3256 2990198 - 2990161 - R 100 -22.9 -3.52906 | opp_overlap 2990160 2990166, overlap 2990166 TAGAACGCCAGACAA CAAAAGCCCGGCAGGGA TTTC TCCATGCCGGGCTTTTG CTTGGTAAAAAGACT TERM 3257 2990166 - 2990193 + r 100 -17 -4.45544 | opp_overlap 2990161 2990166, overlap 2990160 CGCCAGACAACAAAA GCCCGGCAGGGA TTTC TCCATGCCGGGC TTTTGCTTGGTAAAA TERM 3258 2990193 - 2990166 - R 100 -17 -4.84311 | opp_overlap 2990166 2990160, overlap 2990161 CGCCAGACAACAAAA GCCCGGCAGGGA TTTC TCCATGCCGGGC TTTTGCTTGGTAAAA serA 2991814 - 2990219 - | D-3-phosphoglycerate dehydrogenase TERM 3259 2991663 - 2991700 + g 70 -4.9 -4.42513 | gap 1, opp_overlap 2991664, overlap 2991661 2991664 TTGGTGGCCGAACGG ATGGCC-AGACCATCG TAATTGC CGATGATCTCGGCCAG TTTATCTTTATCCTT TERM 3260 2991888 - 2991867 - R 100 -15.9 -4.183 | TGAATGGGGAAGAAA GGTTCCGCC CTGT GGCGGAACC GTAAGAGGATTTAGG serC 2993077 - 2991899 - | phosphoserine aminotransferase TERM 3261 2993249 - 2993264 + rH 82 -9 -4.15222 | AAAAACGTGCGCCAA GTTGCG TCTC CGCAAC TTTATTGACCGAGAT TERM 3262 2993859 - 2993871 + Gr 70 -6.9 -4.08692 | TTCGCTGTTCTGGAC CGGCG GTG CGCTG TTTTACGCGGCCTTC Avi_3600 2994860 - 2993874 - | hypothetical protein Avi_3598 2993347 - 2993937 + | hypothetical protein TERM 3263 2994281 - 2994271 - GT 72 -8.2 -3.73953 | overlap 2994272 AGGATGCCGATGAAA GCGG TGG CCGC ACCGACCCAGAGAAA TERM 3264 2995018 - 2995047 + Tr 95 -9.9 -4.59773 | opp_overlap 2995019 2995020, overlap 2995019 2995020 ATGAAAAACAACAAA ATGCCGTGCGTCC TTTC GAACGCACGGCGC TTTTTCAAAATCGAG TERM 3265 2995019 - 2995046 + Tr 89 -13.4 -3.35542 | opp_overlap 2995019 2995020, overlap 2995018 2995020 TGAAAAACAACAAAA TGCCGTGCGTCC TTTC GAACGCACGGCG CTTTTTCAAAATCGA TERM 3266 2995046 - 2995019 - TR 100 -13.4 -5.16681 | opp_overlap 2995019 2995018 2995020, overlap 2995020 TGAAAAACAACAAAA TGCCGTGCGTCC TTTC GAACGCACGGCG CTTTTTCAAAATCGA TERM 3267 2995020 - 2995045 + Tr 90 -14.7 -2.61004 | opp_overlap 2995019 2995020, overlap 2995019 2995018 GAAAAACAACAAAAT GCCGTGCGTCC TTTC GAACGCACGGC GCTTTTTCAAAATCG TERM 3268 2995045 - 2995020 - TR 100 -16.9 -3.67569 | opp_overlap 2995020 2995019 2995018, overlap 2995019 GAAAAACAACAAAAT GCCGTGCGTCC TTTC GAACGCACGGC GCTTTTTCAAAATCG Avi_3602 2995926 - 2995108 - | outer surface protein TERM 3269 2995960 - 2995933 - R 72 -7.6 -3.96148 | opp_overlap 2995953 2995954, overlap 2995951 TCTTTTCATGAGAAA GGCCCCAAAATC AAAG GATGACGGGGCC ACGCCCCAGGTTTCA Avi_3603 2997080 - 2996064 - | flavin dependant oxidoreductase TERM 3270 2997221 - 2997232 + H 71 -3 -4.79075 | ACTCCCAATCCACAG CAAA TGTT TTTG TTTTGTTCACTTTTT ruvC 2997286 - 2997795 + | Holliday Junction Resolvase RuvC TERM 3271 2998059 - 2998085 + G 75 -8.6 -4.08216 | overlap 2998060 TGCAAAGCGTGCAGG GCGTCGGTGCCA AGG TGGCGCTGGCGA TTTTGGCCACCCTCA TERM 3272 2998060 - 2998084 + G 73 -12.1 -3.04715 | overlap 2998059 GCAAAGCGTGCAGGG CGTCGGTGCCA AGG TGGCGCTGGCG ATTTTGGCCACCCTC ruvA 2997821 - 2998438 + | Holliday junction DNA helicase RuvA Avi_3606 2998493 - 2998801 + | Regulators of stationary/sporulation gene expression protein TERM 3273 2999804 - 2999776 - g 70 -12.3 -2.71712 | opp_overlap 2999789, overlap 2999775 CGGGGCGCGCGAAAT TGCCAGGCGCGCC CGC GGCACGCCGCGCA TTGCAGGACGGCTGC TERM 3274 2999869 - 2999899 + G 88 -13.9 -3.72027 | CGCCCCTGCCGTCAC CCGCGAGATCGCC GATGA GGCGCTCACGCGG TTGTTAGTGGACAAT ruvB 2999147 - 3000190 + | Holliday junction DNA helicase RuvB Avi_3610 3000187 - 3001077 + | Phosphohydrolase protein mutT 3001088 - 3001597 + | MutT/nudix family protein mutT 3001594 - 3002103 + | MutT/nudix family protein Avi_3614 3002093 - 3002653 + | hypothetical protein ybgC 3002665 - 3003114 + | tol-pal system-associated acyl-CoA thioesterase tolQ 3003566 - 3004285 + | protein TolQ tolR 3004335 - 3004793 + | protein TolR TERM 3275 3004982 - 3004971 - g 91 -7.2 -5.252 | CAGGGGGATAAAAAA GCGC CGAA GCGC GAAAAATCGGCCCCC tolA 3004803 - 3005972 + | hypothetical protein TERM 3276 3006456 - 3006484 + G 71 -11.7 -2.87564 | opp_overlap 3006473, overlap 3006463 GCCTGAAAACTGGCG TCGCGTCGCCCAT ATC ATCGCCGACGCGA TCTATGAGCGCATCA tolB 3006025 - 3007332 + | periplasmic component of the Tol biopolymer transport system TERM 3277 3007337 - 3007373 + F 100 -16 -3.73224 | gap 1, opp_overlap 3007335 3007332, overlap 3007341 TTCTCGAATAGCACT TTC-ATCGCCTTCCGGC TCCC GCCGGAAGGCGATTGCA TTTGATGACCGGTCG TERM 3278 3007341 - 3007368 + F 100 -21.4 -3.30701 | opp_overlap 3007335 3007332, overlap 3007337 CGAATAGCACTTTCA TCGCCTTCCGGC TCCC GCCGGAAGGCGA TTGCATTTGATGACC TERM 3279 3007480 - 3007459 - f 73 -11.7 -2.71483 | overlap 3007447 AGAGTTCGGCAACCA CGATTGACA CCAG TGTCAATCG GCACTGCTCACACGG pal 3007564 - 3008097 + | peptidoglycan-associated lipoprotein TERM 3280 3008154 - 3008131 - f 74 -8 -4.0942 | opp_overlap 3008133, overlap 3008133 CATTCATGACAGAAA CAGGGCGGTC TTCG GGCCGCCCTT TTGTTTTCTTCACAC TERM 3281 3008133 - 3008152 + F 100 -12.8 -5.27476 | opp_overlap 3008133 3008131 TTCATGACAGAAACA GGGCGGTC TTCG GGCCGCCC TTTTGTTTTCTTCAC TERM 3282 3008152 - 3008133 - f 81 -10.6 -3.6393 | opp_overlap 3008133, overlap 3008131 TTCATGACAGAAACA GGGCGGTC TTCG GGCCGCCC TTTTGTTTTCTTCAC TERM 3283 3008771 - 3008735 - g 100 -17.2 -3.90586 | overlap 3008756 AGATCATCGGAGAAA CCGCTGGCAGCCAGGC AACAA GCCCGGCTGGCGGCGG GCGCTCCGCTGCACC TERM 3284 3008933 - 3008921 - g 70 -4.7 -4.42639 | overlap 3008922 AGAGCGGAACCAAAA CCGCG TCG CTCGG CGGCGAGCAGGATCT TERM 3285 3009050 - 3009038 - g 82 -10.5 -4.13767 | GCCGCTATCCGAAAA GCGGC AAG GCCGC CGACGCCAATTTCTG ygbF 3008314 - 3009315 + | tol-pal system protein YbgF TERM 3286 3010583 - 3010595 + G 72 -9.1 -3.86822 | CACGCCTGTGATTGC CCCCT ACC AGGGG TTTCTCCCGGGGTTC Avi_3626 3009315 - 3010679 + | hypothetical protein TERM 3287 3011162 - 3011174 + G 70 -2.6 -4.7497 | CATGCTGCTCATTCT CGGC GTCTG GCTG TTTTTCATGCGTCAG ftsH 3010686 - 3012731 + | metalloprotease TERM 3288 3012800 - 3012780 - f 77 -6.7 -4.53034 | opp_overlap 3012781, overlap 3012781 GTCACAGAACGAAAA GCCGCCCTT TGA ACGGGCGGT TTTTTTATGTGGTAA TERM 3289 3012781 - 3012799 + F 100 -10.2 -5.74122 | opp_overlap 3012780 3012781 TCACAGAACGAAAAG CCGCCCTT TGA ACGGGCGG TTTTTTTATGTGGTA TERM 3290 3012799 - 3012781 - f 72 -10.2 -3.31097 | opp_overlap 3012781, overlap 3012780 TCACAGAACGAAAAG CCGCCCTT TGA ACGGGCGG TTTTTTTATGTGGTA glmM 3013000 - 3014352 + | phosphoglucosamine mutase TERM 3291 3014348 - 3014336 - T 72 -10.5 -3.04144 | overlap 3014313 GCGTGATCGCCAACA GCCGC GAA GCGGC GTAAAATCTCATCTT TERM 3292 3014370 - 3014408 + T 100 -15.6 -3.39162 | gap 1, opp_overlap 3014377, overlap 3014377 TCTCATCTTTACACC TG-AAAAAGCCCGGCTA AATCCA TAGCCGGGCTTTTTGCA TTGCGTTCTTTTCTA TERM 3293 3014400 - 3014377 - T 100 -13.9 -4.64766 | opp_overlap 3014370 3014377 TTTACACCTGAAAAA GCCCGGCTA AATCCA TAGCCGGGC TTTTTGCATTGCGTT TERM 3294 3014377 - 3014400 + T 100 -13.9 -4.75776 | opp_overlap 3014377, overlap 3014370 TTTACACCTGAAAAA GCCCGGCTA AATCCA TAGCCGGGC TTTTTGCATTGCGTT Avi_3631 3015198 - 3014452 - | hypothetical protein TERM 3295 3014827 - 3014809 - G 81 -13.2 -3.52652 | CTTATCGAAGGAGAA GGAAACCG ATC CGGTTTCC CCCAGTGCCCCACCA Avi_3632 3015463 - 3015966 + | hypothetical protein TERM 3296 3015990 - 3016014 + T 100 -11.4 -5.0133 | opp_overlap 3015990 ATGTGCCGTTTAGAA GCCGCTGAGC ACCAG GATCAGCGGC TTTTTTGGCAGGCTG TERM 3297 3016014 - 3015990 - T 80 -11.4 -3.28791 | opp_overlap 3015990 ATGTGCCGTTTAGAA GCCGCTGAGC ACCAG GATCAGCGGC TTTTTTGGCAGGCTG Avi_3633 3016856 - 3015984 - | hypothetical protein Avi_3634 3018875 - 3016995 - | Na+/H+ antiporter TERM 3298 3018429 - 3018405 - G 72 -9.1 -3.82084 | TCGCAACAGGAAGAA CACCGCCGCCG CAT CGGTGGAGGCG ACGATGGAGCCAAGC Avi_3635 3021301 - 3019703 - | hypothetical protein TERM 3299 3021085 - 3021103 + g 75 -5.3 -4.57569 | gap 1, overlap 3021085 GGAGGGGCGCTGGAC GG-CAGTC AAAA GACTGTCC TTTTTCAAGGGCTGG TERM 3300 3021446 - 3021434 - R 74 -3.3 -4.91473 | overlap 3021435 3021436 GAATTTAAAAATAAA CCGGA GCC TCCGT CTCCAAATAGATCGT Avi_3636 3021991 - 3021548 - | hypothetical protein TERM 3301 3022055 - 3022021 - R 74 -10 -3.48924 | overlap 3022022 GCACTTGTGAGACAA GCGATCACCGGAGG ATTTTGA CCTCTGGTGATCGG GGAGTTCGAAAGCCG TERM 3302 3022054 - 3022022 - R 81 -13.5 -2.6914 | overlap 3022021 CACTTGTGAGACAAG CGATCACCGGAGG ATTTTGA CCTCTGGTGATCG GGGAGTTCGAAAGCC TERM 3303 3022171 - 3022205 + r 86 -13.7 -2.90496 | gap 1, opp_overlap 3022168, overlap 3022169 3022174 CGTATAGACATAGTC CACCGCCTCAGCCACA AACC TATGGCTGAGG-GGTG TCATTTAACGACCGA TERM 3304 3022174 - 3022203 + r 72 -10.7 -3.00525 | opp_overlap 3022168, overlap 3022171 3022169 ATAGACATAGTCCAC CGCCTCAGCCACA AACC TATGGCTGAGGGG TGTCATTTAACGACC TERM 3305 3022668 - 3022689 + r 100 -17.3 -3.58365 | opp_overlap 3022668 CAAGCAAACAAAAAA GCGGACCGG TTTC CCGGTCCGC TTCTATCATATCGTC TERM 3306 3022689 - 3022668 - R 100 -17.3 -5.72053 | opp_overlap 3022668 CAAGCAAACAAAAAA GCGGACCGG TTTC CCGGTCCGC TTCTATCATATCGTC gapA 3023728 - 3022721 - | Glyceraldehyde 3-Phosphate Dehydrogenase TERM 3307 3022933 - 3022959 + g 77 -7.9 -4.34737 | overlap 3022934 3022937 CCTTCAACTCGCCTT CCGACGCTGCC TTGAT GGCGGCGTTGA TTTCTTCCTTGGTGA TERM 3308 3022934 - 3022958 + g 71 -11.4 -3.20119 | overlap 3022933 3022937 CTTCAACTCGCCTTC CGACGCTGCC TTGAT GGCGGCGTTG ATTTCTTCCTTGGTG TERM 3309 3022937 - 3022955 + g 72 -9.5 -3.72532 | overlap 3022934 3022933 CAACTCGCCTTCCGA CGCTGCC TTGAT GGCGGCG TTGATTTCTTCCTTG TERM 3310 3023913 - 3023895 - R 77 -10.2 -3.67498 | opp_overlap 3023895, overlap 3023883 CAAGCCCGAAGAGAA GCGGGCCC GCC AGACCCGC TCTTGAACCCTCTTC tktA 3025903 - 3023927 - | transketolase TERM 3311 3026151 - 3026130 - H 70 -5.8 -4.26589 | ATGACACAGTGAAAA GCTGGGGT TTGTTG ACGCCAGC TACAGGCAATGACTA Avi_3640 3026354 - 3026623 + | hypothetical protein TERM 3312 3026791 - 3026781 - g 71 -6.8 -4.14739 | TCAGCCATCTCAAAA GCCA GTT TGGC GAAATCGGCGACCTG TERM 3313 3026997 - 3026983 - g 74 -7.8 -4.22346 | overlap 3026984 3026987 CAAACTGACCGAAAA GCCACA GGC TGCGGC CAGCCCGACGGAAAA Avi_3642 3026660 - 3027025 + | hypothetical protein TERM 3314 3027584 - 3027604 + G 71 -11.1 -3.17763 | CAGGCCATCGATGCG GGAGACGAG GTT CTCGTCGCC TTCATGGGCTCTGAC Avi_3644 3027371 - 3028009 + | transcriptional regulator protein TERM 3315 3028142 - 3028099 - T 72 -8.9 -3.8535 | opp_overlap 3028098, overlap 3028097 TAAGCGAAAGAAATA TCGAGGCAGCTTCCATCCT GTCGAA ACGATAGAAGCTGCCGCTA CTGCTTAAAACTCTT mclA 3030189 - 3028147 - | methyl-accepting chemotaxis protein TERM 3316 3029039 - 3029078 + g 72 -9.1 -3.91084 | opp_overlap 3029029 AGAGAGGCTGCCTGC TGCTCGGTGCGGCTGGC CAGCGC GCCTGCGGCGCTGCGCA TTTCATTACCGCTGG TERM 3317 3030924 - 3030937 + G 72 -9.5 -3.64703 | GCAGGCCATTACGAC CGGGC GATT GCCCG TTTGCATCAGAAAGG Avi_3649 3030501 - 3031079 + | 5,10-methenyltetrahydrofolate synthetase Avi_3650 3031093 - 3031917 + | hypothetical protein TERM 3318 3031915 - 3031931 + F 71 -10.9 -2.86164 | CCCGCTTTCTGGGCT TGAAGCC TTC GGCTTCA TATCCTGATTGCGCC pgk 3032037 - 3033239 + | phosphoglycerate kinase TERM 3319 3033255 - 3033289 + F 100 -15.9 -4.64861 | opp_overlap 3033255 CAACCTGCGAAAAAA TTCAGGTGCGGCA CGGAACAAA TGCCGCACCTGAA TTTCTTTTAAAAAAG TERM 3320 3033289 - 3033255 - f 100 -16.6 -5.03145 | opp_overlap 3033255 CAACCTGCGAAAAAA TTCAGGTGCGGCAC GGAACAA ATGCCGCACCTGAA TTTCTTTTAAAAAAG TERM 3321 3033319 - 3033339 + F 73 -9.1 -3.68619 | opp_overlap 3033319, overlap 3033313 GATTGAATTTTAAAA CGATTGAAG TGA TTTCAATCG TTTCAATGACTTAAC TERM 3322 3033339 - 3033319 - f 78 -8.4 -4.19953 | opp_overlap 3033319 3033313 GATTGAATTTTAAAA CGATTGAA GTGAT TTCAATCG TTTCAATGACTTAAC Avi_3652 3033424 - 3034449 + | fructose bisphosphate aldolase TERM 3323 3034487 - 3034508 + F 100 -18.7 -5.18726 | ATCCTGCATCTTGAA GCCCCGCCG CACC CGGCGGGGC TTTTTCTTGTCACCC TERM 3324 3034513 - 3034531 + F 74 -8.2 -3.98816 | CCCGGCGGGGCTTTT TCTTGTCA CCC TGACAGGA TTTCATCTTCATTTC TERM 3325 3035656 - 3035685 + G 76 -4.4 -4.74132 | gap 2, opp_overlap 3035628 3035629, overlap 3035629 3035628 3035662 CTCGGCGCGGCGCTG GGCATTCTGGTGAC TGGC GTCATCAG--TGCC TTTTTGCTGGGATAT Avi_3655 3035557 - 3036726 + | hypothetical protein TERM 3326 3036745 - 3036733 - f 71 -2.7 -4.87807 | GCAAGATAGGAAAAA TCCTT GAG AAGAA CGCTTCGTATCAGGC TERM 3327 3036762 - 3036819 + F 100 -14.9 -4.7329 | opp_overlap 3036771 3036776, overlap 3036768 3036769 GCTTCGTATCAGGCC AGCAGCACATTACAGCGCCGTGCGCCA TATA TGGTGCACGGCGCTGTAATGCTTTATA TTTTTGCATAATTTT TERM 3328 3036768 - 3036813 + F 100 -27.1 -4.56791 | opp_overlap 3036771 3036776, overlap 3036762 3036769 TATCAGGCCAGCAGC ACATTACAGCGCCGTGCGCCA TATA TGGTGCACGGCGCTGTAATGC TTTATATTTTTGCAT TERM 3329 3036769 - 3036812 + F 100 -30.6 -3.32448 | opp_overlap 3036771 3036776, overlap 3036768 3036762 ATCAGGCCAGCAGCA CATTACAGCGCCGTGCGCCA TATA TGGTGCACGGCGCTGTAATG CTTTATATTTTTGCA TERM 3330 3036810 - 3036771 - f 100 -25.2 -2.82834 | opp_overlap 3036769 3036768 3036762, overlap 3036776 CAGGCCAGCAGCACA TTACAGCGCCGTGCGCCA TATA TGGTGCACGGCGCTGTAA TGCTTTATATTTTTG TERM 3331 3036805 - 3036776 - f 100 -19.3 -2.87944 | opp_overlap 3036769 3036768 3036762, overlap 3036771 CAGCAGCACATTACA GCGCCGTGCGCCA TATA TGGTGCACGGCGC TGTAATGCTTTATAT TERM 3332 3036835 - 3036862 + F 72 -10 -3.32844 | opp_overlap 3036832 3036831, overlap 3036836 TTTTTGCATAATTTT CTCTTTAAACCG ATTC CGGTTTAAAGAA TTATGCAATAAGGCC TERM 3333 3036836 - 3036861 + F 81 -13.5 -2.59564 | opp_overlap 3036832 3036831, overlap 3036835 TTTTGCATAATTTTC TCTTTAAACCG ATTC CGGTTTAAAGA ATTATGCAATAAGGC Avi_3656 3036931 - 3037257 + | hypothetical protein Avi_3657 3037532 - 3037377 - | hypothetical protein Avi_3661 3037820 - 3039103 + | MFS permease TERM 3334 3039262 - 3039245 - g 70 -2.6 -4.81249 | overlap 3039237 CTCGAAACGGAAAAA TCCAGC AAGATG GCGGGA AAAGCGGCAGCTGAA Avi_3662 3039107 - 3039301 + | hypothetical protein TERM 3335 3039368 - 3039385 + F 70 -5.5 -4.39166 | GGGAACCCTCGCATG CGGCG GCAAGCAA CGCCG TTTTGATCTATCGCG TERM 3336 3039522 - 3039539 + F 100 -12.7 -5.68039 | CCTGTTTTACCTTGA GAGCCGC TTTT GCGGCTC TTTTTTTATGCGTTT Avi_3663 3039710 - 3040225 + | hypothetical protein TERM 3337 3040315 - 3040291 - T 100 -17.1 -3.57462 | opp_overlap 3040291 CATCGGATTTCTAAA CCCGGCTCTGC CCA GCAGTGCCGGG TTTTTCGCGTAAAAT TERM 3338 3040291 - 3040315 + T 100 -17.1 -4.62336 | opp_overlap 3040291 CATCGGATTTCTAAA CCCGGCTCTGC CCA GCAGTGCCGGG TTTTTCGCGTAAAAT TERM 3339 3040363 - 3040346 - T 74 -6.3 -4.58395 | gap 1, overlap 3040347 CCGATGTGCCAAAAA GGCGCTGA AAA TCAGC-CC AAACCAAAAAGGCCC TERM 3340 3040374 - 3040395 + T 100 -17.3 -4.56775 | opp_overlap 3040374 AGCCCAAACCAAAAA GGCCCGGTC ACAA GACCGGGCC TTTTTGGAAAGACAT TERM 3341 3040395 - 3040374 - T 100 -17.3 -4.99134 | opp_overlap 3040374 AGCCCAAACCAAAAA GGCCCGGTC ACAA GACCGGGCC TTTTTGGAAAGACAT rpmE 3040644 - 3040423 - | 50S ribosomal protein L31 TERM 3342 3041445 - 3041464 + G 71 -10 -3.53091 | gap 1, opp_overlap 3041445 GCCTTGCCCAGGACA GGCTAGCGG AGG CCGC-AGCC TTTGCAGGCGAGAGT TERM 3343 3042228 - 3042215 - g 72 -9.5 -3.72893 | GAGGCCGTCATCAAA GCGGC TCGC GCCGC CCAGGCCACGGAATT Avi_3667 3040811 - 3042637 + | ABC transporter nucleotide binding/ATPase protein Avi_3668 3044300 - 3042642 - | hypothetical protein TERM 3344 3044166 - 3044148 - G 76 -4.4 -4.7254 | overlap 3044151 ACTGTCGATGAAAAA CAAGCCGC CCA GCGACCAG AAAGCCTGCCCGCCC TERM 3345 3044163 - 3044151 - G 76 -6.9 -4.47707 | overlap 3044148 GTCGATGAAAAACAA GCCGC CCA GCGAC CAGAAAGCCTGCCCG motB 3045674 - 3044643 - | flagellar motor protein TERM 3346 3045135 - 3045154 + g 70 -4.2 -4.71061 | gap 1, overlap 3045136 CAGCGCCACATTCAG CCGCCG-TC CGA GATCGGCGA TTTTTGCCTGTGAAT Avi_3671 3046691 - 3045678 - | hypothetical protein TERM 3347 3045822 - 3045876 + g 75 -4.2 -4.82667 | gap 3, opp_overlap 3045822, overlap 3045823 3045824 GATGCCATCCGACAA G-CCGCTCAGCGCGGCTGCCGACCGGT CGGA GCCGGA-GGCAGGC-TGCTGGGCGATC TTTTTCATCTGCTCC TERM 3348 3045823 - 3045874 + g 71 -7.9 -4.02905 | gap 2, opp_overlap 3045822, overlap 3045822 3045824 ATGCCATCCGACAAG CCGCTCAGCGCGGCTGCCGACCGGT CGGA GCCGGA-GGCAGGC-TGCTGGGCGA TCTTTTTCATCTGCT TERM 3349 3046849 - 3046826 - R 100 -13.2 -4.29845 | overlap 3046819 3046827 GAATTGAAGCGAAAA CCGGCGCTTT TGCG AAAGCGCCGA AAAAGCCATGCTGGC TERM 3350 3046848 - 3046827 - R 95 -14.5 -3.17184 | overlap 3046819 3046826 AATTGAAGCGAAAAC CGGCGCTTT TGCG AAAGCGCCG AAAAAGCCATGCTGG TERM 3351 3046864 - 3046854 - R 81 -6.8 -4.60924 | overlap 3046856 GAAAGCGCCGAAAAA GCCA TGC TGGC GCTTGAGCCAATCAA suhB 3047676 - 3046876 - | extragenic suppressor protein SuhB TERM 3352 3047739 - 3047749 + r 77 -8.2 -4.08767 | overlap 3047735 AACAGGATGGAGGTC GGGC GCG GCCC TTTTAGCGGCGTGCA enhC 3049442 - 3047820 - | enhanced entry protein thiE 3050122 - 3049439 - | thiamine-phosphate pyrophosphorylase TERM 3353 3050199 - 3050215 + H 85 -7.3 -4.78848 | overlap 3050187 AGGTGCTGTAGCACG TCATGTC TGC GGCATGA TTTTCTCTTTAAACC TERM 3354 3050637 - 3050671 + G 87 -7.6 -4.8269 | overlap 3050638 TGGATCTGGTCGCGC TGCACGCCTGGCGCCA CCA TGGCGACTGGCGCACG TTTTTCCTGCTTCTG TERM 3355 3050861 - 3050846 - g 75 -9 -4.09739 | overlap 3050851 GCAAGGCCGGCAAAA CCACAG CGCG CTGTGG CCGCCACGGGTTGGG TERM 3356 3050914 - 3050926 + G 75 -10.5 -3.65425 | CTTTGTCGCGCATGC CGGCG GTC CGCCG TTTGAAATCTATGCC Avi_3677 3050453 - 3051220 + | hypothetical protein Avi_3678 3051403 - 3051663 + | transcriptional regulator ArsR family TERM 3357 3051805 - 3051834 + T 70 -10 -3.24924 | gap 1, opp_overlap 3051805, overlap 3051803 ACAGCCCACGAAAAA GGCCCCGAAG-GC AATCG GCGCTTCGGAGCC TGTTCTCGGTCAAGA TERM 3358 3051834 - 3051805 - T 100 -12.2 -4.74132 | gap 1, opp_overlap 3051805 3051803 ACAGCCCACGAAAAA GGCCCCGAAG-GC AATCG GCGCTTCGGAGCC TGTTCTCGGTCAAGA Avi_3680 3052177 - 3052004 - | hypothetical protein Avi_3681 3052488 - 3052721 + | hypothetical protein TERM 3359 3052874 - 3052889 + G 72 -4.6 -4.57569 | overlap 3052875 CCGCCCATCGCACCC CCGACC GCAT GGTCGC TTTTTCCAAGGGTGC purE 3052738 - 3053238 + | phosphoribosylaminoimidazole carboxylase catalytic subunit TERM 3360 3053288 - 3053311 + G 71 -11 -3.25823 | gap 1 CCATTGGAATTATCG GCG-GCGGCCA GCT TGGCCGCATGC TTGCTATGGCCGCAG purK 3053266 - 3054321 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 3361 3054405 - 3054420 + F 93 -8.2 -4.76041 | opp_overlap 3054394 3054402 3054404 3054405, overlap 3054402 CCAACCCTGAAACAG CGCGCC CAGC GGTGCG TTTTTCGTCGATATA rpmJ 3054484 - 3054609 + | ribosomal protein L36 TERM 3362 3054685 - 3054731 + F 100 -19.1 -4.32951 | gap 2, opp_overlap 3054679 3054690, overlap 3054690 TCGCAGAATTCGGTT TGAAACAGAGCGCATGCACGGTA GAT TACC-TGCATGCGCTCTGTT-CG TTTGTTCATTCACCT TERM 3363 3054690 - 3054727 + F 100 -22.3 -3.72532 | gap 1, opp_overlap 3054679 3054690, overlap 3054685 GAATTCGGTTTGAAA CAGAGCGCATGCACGGTA GAT TACC-TGCATGCGCTCTG TTCGTTTGTTCATTC TERM 3364 3054727 - 3054690 - f 100 -22.3 -3.53761 | gap 1, opp_overlap 3054690 3054685, overlap 3054679 GAATTCGGTTTGAAA CAGAGCGCATGCACGGTA GAT TACC-TGCATGCGCTCTG TTCGTTTGTTCATTC Avi_3687 3054718 - 3055503 + | hypothetical protein Avi_3689 3055765 - 3056772 + | hypothetical protein TERM 3365 3057001 - 3056968 - T 73 -11.9 -2.6415 | opp_overlap 3056968, overlap 3056971 3056975 TAAATTATTTATAAG TAATAAAGTCGCCTC TCCC AAGGCGGCTTTATTA TTTTATTGTATCTAT TERM 3366 3056968 - 3057001 + T 100 -13.4 -4.88495 | opp_overlap 3056968 3056971 3056975 TAAATTATTTATAAG TAATAAAGTCGCCT CTCCCA AGGCGGCTTTATTA TTTTATTGTATCTAT TERM 3367 3056998 - 3056971 - T 71 -9.2 -3.46212 | opp_overlap 3056968, overlap 3056968 3056975 ATTATTTATAAGTAA TAAAGTCGCCTC TCCC AAGGCGGCTTTA TTATTTTATTGTATC TERM 3368 3056994 - 3056975 - T 70 -5.6 -4.36596 | opp_overlap 3056968, overlap 3056971 3056968 TTTATAAGTAATAAA GTCGCCTC TCCC AAGGCGGC TTTATTATTTTATTG TERM 3369 3057279 - 3057252 - T 100 -15.6 -4.72272 | opp_overlap 3057271 CCCTGTCACGAAAAA CGCCGCCCGTCA TCCC TGACAAGCGGCG CTAGAATTTTTCGGA pykA 3058861 - 3057422 - | pyruvate kinase TERM 3370 3058083 - 3058116 + g 81 -13.1 -3.53091 | opp_overlap 3058082 3058083 CAGGCGCGAATCAAC TGCTTCTGGATGCCG GGAA CGGCCTCCAGCGGCA TTTCCACGCCAAGGT Avi_3691 3059472 - 3058858 - | hypothetical protein TERM 3371 3059092 - 3059127 + g 73 -12.6 -2.70932 | gap 1, opp_overlap 3059080 GTAGCGCGATTTCAG CTCGCCTTCGATCAGCG TTG CGCAGGTCGAAG-CGGG TACTTGCCACCAGCC TERM 3372 3059638 - 3059581 - H 73 -11.6 -2.7263 | opp_overlap 3059584 3059585, overlap 3059580 3059596 AGCATCCTTTTAAAT CCGCCTGCTGCATAATTCCTTAAATC CAACCC GATTTAAGGAATTATGCAGCAAATTT GAAGGGCGACGGCCT TERM 3373 3059584 - 3059635 + H 100 -17.7 -3.53012 | opp_overlap 3059580 3059581 3059596, overlap 3059585 ATCCTTTTAAATCCG CCTGCTGCATAATTCCTTAAATC CAACCC GATTTAAGGAATTATGCAGCAAA TTTGAAGGGCGACGG TERM 3374 3059585 - 3059634 + H 100 -21.2 -2.71712 | opp_overlap 3059580 3059581 3059596, overlap 3059584 TCCTTTTAAATCCGC CTGCTGCATAATTCCTTAAATC CAACCC GATTTAAGGAATTATGCAGCAA ATTTGAAGGGCGACG TERM 3375 3059623 - 3059596 - H 72 -10.1 -3.28712 | opp_overlap 3059585 3059584, overlap 3059580 3059581 CCGCCTGCTGCATAA TTCCTTAAATC CAACCC GATTTAAGGAA TTATGCAGCAAATTT Avi_3692 3059829 - 3060632 + | hypothetical protein Avi_3693 3060629 - 3060955 + | hypothetical protein Avi_3695 3061183 - 3061446 + | hypothetical protein TERM 3376 3061727 - 3061712 - T 100 -11.8 -4.86133 | opp_overlap 3061712 TACAGATACGAAAAA CCCGCG GTTA CGCGGG TTTTTTATGCAGCCC TERM 3377 3061712 - 3061727 + T 100 -11.8 -5.24129 | opp_overlap 3061712 TACAGATACGAAAAA CCCGCG GTTA CGCGGG TTTTTTATGCAGCCC Avi_3697 3062168 - 3061767 - | hypothetical protein TERM 3378 3061897 - 3061870 - G 73 -12.6 -2.78384 | opp_overlap 3061873 GCCTGGGTTACGACA CGCCCGCCACGG CCAG CCTTGGCTGGCG GCTCGATGCGGTTCT Avi_3698 3063658 - 3062165 - | hypothetical protein TERM 3379 3064064 - 3064025 - R 95 -12.8 -4.16943 | opp_overlap 3064031, overlap 3064031 CCTTATAGCCCAAAA TGACAACGCCGCCCACCC TGTC AGGTGCGCGGCGTGTTCA AATCTTCAGCCGGGC TERM 3380 3064058 - 3064031 - R 100 -14.8 -3.68761 | opp_overlap 3064031, overlap 3064025 AGCCCAAAATGACAA CGCCGCCCACCC TGTC AGGTGCGCGGCG TGTTCAAATCTTCAG TERM 3381 3064031 - 3064058 + r 87 -14.1 -3.0976 | opp_overlap 3064031 3064025 AGCCCAAAATGACAA CGCCGCCCACC CTGTCA GGTGCGCGGCG TGTTCAAATCTTCAG Avi_3699 3065427 - 3064108 - | sigma 54 dependent transcriptional activator TERM 3382 3065091 - 3065069 - G 85 -10.5 -4.38712 | TTGACCGTGACAAAA GGCCGCGAC GCACG GTCGCTGCC CGACTGGATAGCCCG TERM 3383 3067339 - 3067370 + G 70 -12.2 -2.74144 | gap 1, overlap 3067359 GGCGGCTGGATCGAT GCGCCCGCCCGCCCT GGC AAGGCGC-CGGGCGC CTTTGCCCATCCGAC TERM 3384 3067359 - 3067371 + G 71 -10.5 -3.57144 | overlap 3067339 CGCCCGCCCTGGCAA GGCGC CGG GCGCC TTTGCCCATCCGACC pepF 3066232 - 3068091 + | oligoendopeptidase F TERM 3385 3069226 - 3069236 + G 74 -8.2 -4.24204 | opp_overlap 3069209 3069226 3069225 GGGGCTTTTCAAAAG CCGC CGG GCGG TTTTCAATGTCGGTG TERM 3386 3069241 - 3069260 + G 73 -2.8 -4.8622 | CCGCCGGGCGGTTTT CAATGTCG GTGG CGGGATTG TTTTTGATTCGAAGC pabB 3068111 - 3069346 + | para-aminobenzoate synthase component I Avi_3704 3069331 - 3069975 + | hypothetical protein TERM 3387 3070003 - 3070044 + F 81 -6.5 -4.7416 | opp_overlap 3070007 3070012, overlap 3070004 3070007 GAAAAAACAATAGCA ACAACAGGATCGACCGTTT GATC GAACGGATGGTCCTGGTGG TTTTTACGATTTTAG TERM 3388 3070004 - 3070043 + F 74 -10 -3.43411 | opp_overlap 3070007 3070012, overlap 3070003 3070007 AAAAAACAATAGCAA CAACAGGATCGACCGTTT GATC GAACGGATGGTCCTGGTG GTTTTTACGATTTTA TERM 3389 3070472 - 3070454 - g 86 -5.8 -5.14563 | opp_overlap 3070454 3070456, overlap 3070455 3070456 CGCGGCAGGAAAAAA TGCCCGGC TTG GCCGGGTC CTTTCCTTGATACGG TERM 3390 3070471 - 3070455 - g 72 -9.3 -3.68256 | opp_overlap 3070454 3070456, overlap 3070454 3070456 GCGGCAGGAAAAAAT GCCCGGC TTG GCCGGGT CCTTTCCTTGATACG TERM 3391 3070456 - 3070470 + G 76 -12.8 -3.03624 | opp_overlap 3070455 3070454 3070456, overlap 3070454 CGGCAGGAAAAAATG CCCGGC TTG GCCGGG TCCTTTCCTTGATAC TERM 3392 3070470 - 3070456 - g 73 -12.8 -2.80472 | opp_overlap 3070456 3070454, overlap 3070455 3070454 CGGCAGGAAAAAATG CCCGGC TTG GCCGGG TCCTTTCCTTGATAC Avi_3705 3070209 - 3071330 + | hypothetical protein TERM 3393 3072712 - 3072684 - g 78 -8.9 -4.25104 | TGTTCTCGACGAAAA CGAACTGGTCGAT GGC ATCGACGAGTTGG GCGTGCTGCTCTACG Avi_3707 3071611 - 3073053 + | homospermidine synthase TERM 3394 3073147 - 3073115 - f 90 -11.8 -3.91488 | overlap 3073134 AATGGCCTGAAATAA CGGCGCCGCGCATC GAAAA GCAGCGCGGCGCTG AGAACAACATGGCAC Avi_3710 3073391 - 3073783 + | outer membrane lipoprotein TERM 3395 3073811 - 3073829 + F 95 -9.5 -4.90906 | opp_overlap 3073811, overlap 3073826 TCCACGCTTGGCAAA GCCGGTC CATGA GGCCGGC TTTTTGCTGTTCTGG Avi_3711 3073967 - 3075883 + | 5prime-nucleotidase TERM 3396 3075940 - 3075926 - f 70 -5.6 -4.4009 | opp_overlap 3075930, overlap 3075927 3075928 CCGCATGCGACAAAA GGTCCG GCC CGGAGC AATCCGGGCCGTTTT TERM 3397 3075930 - 3075951 + F 100 -17.3 -4.93365 | opp_overlap 3075926 3075928 3075927 ATGCGACAAAAGGTC CGGCCCGGA GCAA TCCGGGCCG TTTTTCATTCTGGAC hemH 3076032 - 3077066 + | ferrochelatase TERM 3398 3077177 - 3077127 - T 100 -18.4 -3.81741 | opp_overlap 3077132, overlap 3077128 AACCGATAAGGGAAA CTCTAGCATCGAGCCGAAAACCGG TTT CCCCTTTCCGGCTCGATGCTTGAA TACACGTTACTTGGC TERM 3399 3077176 - 3077128 - T 100 -19.7 -2.88321 | opp_overlap 3077132, overlap 3077127 ACCGATAAGGGAAAC TCTAGCATCGAGCCGAAAACCGG TTT CCCCTTTCCGGCTCGATGCTTGA ATACACGTTACTTGG TERM 3400 3077132 - 3077172 + T 100 -16.9 -3.06831 | opp_overlap 3077128 3077127 ATAAGGGAAACTCTA GCATCGAGCCGAAAACCGG TTT CCCCTTTCCGGCTCGATGC TTGAATACACGTTAC Avi_3713 3078425 - 3077184 - | hypothetical protein TERM 3401 3078468 - 3078457 - H 72 -5.8 -4.42088 | AAAATGAGAAAACAA CACC TATG GGTG CAATATACCTTACAT TERM 3402 3078706 - 3078727 + G 83 -9.5 -4.28361 | gap 1, overlap 3078708 CTCGGCTTTGCCGCA TCCCTGATCG GGG CGATC-GGGA TTTTCGTGACATTGC mcpA 3078652 - 3080691 + | methyl-accepting chemotaxis protein TERM 3403 3080813 - 3080760 - T 93 -5.9 -5.26875 | overlap 3080765 GGTTTAAGGAAAAAA TGAGAGGTTGGCGGTCACAGAGAAG CAAT CTTGTCCGTAAGCGCCACCCAACCA CCAGGCTCCATGATC TERM 3404 3080808 - 3080765 - T 76 -11 -3.27687 | overlap 3080760 AAGGAAAAAATGAGA GGTTGGCGGTCACAGAGAAG CAAT CTTGTCCGTAAGCGCCACCC AACCACCAGGCTCCA Avi_3715 3081988 - 3080774 - | hypothetical protein exsD 3082844 - 3082077 - | radical activating protein exsC 3083179 - 3082823 - | 6-pyruvoyl tetrahydropterin synthase exsB 3083891 - 3083184 - | succinoglycan biosynthesis regulator TERM 3405 3083753 - 3083771 + g 81 -3 -5.252 | opp_overlap 3083765, overlap 3083755 GCCGCTTGGCCGCGA GTGCTGCA AAA TCCAGCTC TTTTTTATGACGCTG Avi_3720 3084089 - 3085123 + | hypothetical protein Avi_3721 3085130 - 3085588 + | hypothetical protein kpsF 3086828 - 3085833 - | capsule expression protein TERM 3406 3086743 - 3086703 - G 75 -8.9 -4.07885 | opp_overlap 3086737 GATTGCGTTGCAAAA CGGCCCGGCAAGATACCCT GCC AAAGCCTCTTCCAGGGCCG CCAGCCCGCTTTGTT Avi_3723 3087036 - 3088553 + | hypothetical protein TERM 3407 3088590 - 3088558 - T 100 -17.1 -3.91716 | opp_overlap 3088563, overlap 3088563 TGAGGCGGTAAACAA GAAAACGCCGCGCGT TGG ACGCACGGCGTTTTA AGTTTCAGTCCGTTT TERM 3408 3088585 - 3088563 - T 100 -17 -5.00196 | opp_overlap 3088563, overlap 3088558 CGGTAAACAAGAAAA CGCCGCGCGT TGG ACGCACGGCG TTTTAAGTTTCAGTC TERM 3409 3088563 - 3088585 + T 100 -14.8 -4.36595 | opp_overlap 3088563 3088558 CGGTAAACAAGAAAA CGCCGCGCGT TGG ACGCACGGCG TTTTAAGTTTCAGTC TERM 3410 3088629 - 3088612 - T 70 -7 -4.07687 | opp_overlap 3088600 AGTCCGTTTGCAAAA CCGCTT ACTTCA AAGCGG CCAGCAACGCCTTCA galU 3089503 - 3088616 - | UTP-glucose-1-phosphate uridylyltransferase mltB 3089761 - 3090978 + | lytic murein transglycosylase Avi_3728 3091024 - 3092250 + | hypothetical protein TERM 3411 3092292 - 3092254 - T 85 -10.4 -4.16033 | overlap 3092256 CCGAAACAATAATAA GAGCGTCTGTCAGGTT TAGATGG AACCTGACAGACTCTA AGACAAACCCTTATA TERM 3412 3092290 - 3092256 - T 93 -13 -3.66055 | overlap 3092254 GAAACAATAATAAGA GCGTCTGTCAGGTT TAGATGG AACCTGACAGACTC TAAGACAAACCCTTA TERM 3413 3092593 - 3092628 + T 100 -17.8 -3.4072 | gap 1, opp_overlap 3092605, overlap 3092594 CACGCGCCCAGCGGT TCTTTCCAGGAAGACGG GGT CCGTC-TCCTGGAAAGG TTATCGTCAAAAATC TERM 3414 3092594 - 3092627 + T 100 -19.1 -2.64218 | gap 1, opp_overlap 3092605, overlap 3092593 ACGCGCCCAGCGGTT CTTTCCAGGAAGACGG GGT CCGTC-TCCTGGAAAG GTTATCGTCAAAAAT Avi_3729 3094569 - 3092635 - | methyl-accepting chemotaxis protein TERM 3415 3093179 - 3093155 - G 80 -9.9 -4.15565 | GCCACCACGGCAAAA CCCTTGCCAGC TTC ACCGGCACGGG CGGCCTCAACACCAG TERM 3416 3093712 - 3093729 + g 75 -10.5 -3.66908 | overlap 3093708 ATCCTTGGCTCGTTG CGCGTCG CGCT CGGCGCG TTCCTTTTCCGACAA TERM 3417 3094883 - 3094899 + r 95 -13.7 -3.31144 | opp_overlap 3094883 ATAGCCAACAAAAAA GGGGGCT GAA AGCCCCC TTATAGAGATCCGAA TERM 3418 3094899 - 3094883 - R 100 -13.7 -5.49234 | opp_overlap 3094883 ATAGCCAACAAAAAA GGGGGCT GAA AGCCCCC TTATAGAGATCCGAA gltD 3096379 - 3094925 - | glutamate synthase small subunit TERM 3419 3095916 - 3095869 - G 76 -12.6 -3.08197 | gap 1 GCTCATAGACATACA CGTCATGCCCGGC-GCGGCCAAG CTG CTGGGCAGCGGCCATGCCTGACG GGCCAGACCCAATGA Avi_3732 3096966 - 3096568 - | nucleic acid-binding protein Avi_3733 3097265 - 3096963 - | Virulence-associated protein gltB 3102011 - 3097290 - | glutamate synthase large subunit TERM 3420 3097657 - 3097678 + g 83 -13.7 -3.53012 | opp_overlap 3097643 ACACCGCCGGACATG CCGGCTGCA AAGT TGCGGCCGG TTTCGCCCAGCACCA TERM 3421 3098932 - 3098950 + g 73 -12.4 -3.02144 | opp_overlap 3098922 3098921 3098924, overlap 3098924 GAAATCAGGCCGACG CCCGGCGT TGA ATGCCGGG TCTTGGCAACGGTCG TERM 3422 3100320 - 3100344 + g 73 -12.1 -3.16564 | GCTCATCACCAGCTC CTCGCGGATCG GAT CGATCGGCGGG TTGGTGACCTGGGCA TERM 3423 3102367 - 3102335 - H 77 -6.9 -4.56367 | overlap 3102336 TATGGCAGAAACAAA TCGGCTTCGCAAGCC ATC GGCTCAAAAAGCCGG GCGATGACGCGACAG TERM 3424 3102366 - 3102336 - H 72 -10.4 -3.33097 | overlap 3102335 ATGGCAGAAACAAAT CGGCTTCGCAAGCC ATC GGCTCAAAAAGCCG GGCGATGACGCGACA TERM 3425 3102378 - 3102390 + H 91 -7.7 -5.04385 | GCCGGGCGATGACGC GACAG AAT CTGTC TTTTTTAGCGATCTG TERM 3426 3102521 - 3102492 - H 73 -11.3 -2.76696 | overlap 3102491 CGCGCGGGCAATAAT CGGTCCGTCCTGC GACG GCTGATCGGACCG GATTGAACACGGCGG TERM 3427 3102644 - 3102602 - H 76 -12.3 -2.62184 | opp_overlap 3102609, overlap 3102609 CTCGCCTTGACAGCA TTGCAAATATCTCAAATGC GGCAG ACGCTTGAGATATTTGCAA AGGGAATACCAAGAG TERM 3428 3102681 - 3102651 - H 80 -11.3 -3.28001 | opp_overlap 3102657, overlap 3102646 TATTTGCAAAGGGAA TACCAAGAGTCAT GTTCA ATGCCTCTTGGTA CTACGCCCATGGACA TERM 3429 3103569 - 3103551 - g 72 -5.9 -4.47707 | overlap 3103554 TCTCAGCAAAAACAA CAAGGCC CGTCT GGCCTGG CAAACCGAGAGCAAT TERM 3430 3103566 - 3103554 - g 72 -6.2 -4.33997 | overlap 3103551 CAGCAAAAACAACAA GGCC CGTCT GGCC TGGCAAACCGAGAGC Avi_3736 3102724 - 3103770 + | threonine aldolase TERM 3431 3103838 - 3103808 - T 85 -14 -2.80474 | opp_overlap 3103814, overlap 3103814 GAGAACACCCCAAAC GCAAAAGGGCGGCC CCA AGCCGCCCTTCTTC ATGTCTTCCAGACCC TERM 3432 3103814 - 3103832 + T 100 -13.1 -3.82205 | opp_overlap 3103808 3103814 ACCCCAAACGCAAAA GGGCGGC CCCAA GCCGCCC TTCTTCATGTCTTCC TERM 3433 3103832 - 3103814 - T 100 -13.8 -4.35926 | opp_overlap 3103814, overlap 3103808 ACCCCAAACGCAAAA GGGCGGCC CCA AGCCGCCC TTCTTCATGTCTTCC ibpA 3104324 - 3103857 - | small heat shock protein TERM 3434 3104620 - 3104666 + H 100 -14 -5.26875 | gap 2 TCTTCAGTGCCTGTT GCCGCCCATTTGTCTTGAAGAC TAATC GTCTTGAAG-CAA-TGGGCGGC TTTTTTCCTTGACCC TERM 3435 3105074 - 3105041 - g 83 -13.3 -3.3514 | opp_overlap 3105040 3105039 3105047 3105048, overlap 3105048 ACCCAGAGGGGATAA GGAAAAACGCTGG GGCCATGT CCAGCGCTTTTCC GATTATGAGCGGGAT TERM 3436 3105067 - 3105048 - g 86 -6.4 -4.93365 | opp_overlap 3105048 3105047 3105040 3105039, overlap 3105041 GGGGATAAGGAAAAA CGCTGG GGCCATGT CCAGCG CTTTTCCGATTATGA pldB 3104754 - 3105752 + | lysophospholipase TERM 3437 3106587 - 3106613 + G 72 -5 -4.56597 | opp_overlap 3106587, overlap 3106595 AACCTGATCACGACA GCGATTCACGAA CAA TTCGTGTTCCGC TTTTTCCCCAAGGAA Avi_3741 3105969 - 3107018 + | hypothetical protein TERM 3438 3107028 - 3107001 - T 70 -7 -4.08485 | GCCATCGAAAGCAAA GTCGCAGTGCTT GGCT AAACACAACGAC ACAATAGAATGCTAC TERM 3439 3107077 - 3107038 - T 91 -12.1 -3.81548 | overlap 3107039 AACGACACAATAGAA TGCTACCGGTGGCCATG GAAATT CATGGACACCGGTGGCG ATCAATCGACCAAAA TERM 3440 3107076 - 3107039 - T 95 -15.6 -2.87844 | overlap 3107038 ACGACACAATAGAAT GCTACCGGTGGCCATG GAAATT CATGGACACCGGTGGC GATCAATCGACCAAA Avi_3743 3107852 - 3107079 - | inositol monophosphatase family protein TERM 3441 3107924 - 3107900 - R 70 -5.6 -4.4009 | overlap 3107901 TCTTACGGCATAAAA CGCCGGATCG GAATT CGCTCCAGCA TAAATTTATCAGGAC TERM 3442 3108038 - 3108020 - R 93 -3.9 -5.55664 | opp_overlap 3108020 TCATGATTAAAAAAA TGTCAAA ATCGA CTTGACA TTTGTGCAATGCAAA TERM 3443 3108119 - 3108135 + r 100 -10.8 -5.87688 | TCCTCCCTAGACTTG CCGCGC CTCGA GCGCGG TTTTTTTTGCCTTAT Avi_3744 3109101 - 3108205 - | hypothetical protein TERM 3444 3109298 - 3109243 - H 83 -12.5 -3.37975 | opp_overlap 3109252, overlap 3109244 ATGCAGCAGTTATAA TGTGCTACAGCGACCTGTCTGCGCC GCCAAA GACGCGGACAGGTCGCTGTAGTGGC GAAAAATCACACCCG TERM 3445 3109297 - 3109244 - H 100 -16 -2.62463 | opp_overlap 3109252, overlap 3109243 TGCAGCAGTTATAAT GTGCTACAGCGACCTGTCTGCGCC GCCAAA GACGCGGACAGGTCGCTGTAGTGG CGAAAAATCACACCC TERM 3446 3109252 - 3109289 + H 100 -19.2 -2.78384 | opp_overlap 3109244 3109243 TTATAATGTGCTACA GCGACCTGTCTGCGCC GCCAAA GACGCGGACAGGTCGC TGTAGTGGCGAAAAA Avi_3746 3109401 - 3109766 + | chemotaxis response regulator TERM 3447 3109894 - 3109868 - f 71 -10.8 -2.90496 | overlap 3109865 CGGCTCGGCAAATGA TGCATGCGCCAG GTT CTGGCGCATGGT AGATCACGACAGTGA TERM 3448 3109956 - 3109935 - f 72 -7.2 -4.17089 | overlap 3109927 CGTAAACCCGGAAAA GCCAGCGG ATACAA CCGCTTGC CGAATTCTTGATCCA TERM 3449 3110146 - 3110164 + F 70 -11 -2.76453 | TTTGAATGCCATTTC GGCTTGTC GAT GACAGGCC TGGTTCCGATTATGA TERM 3450 3110249 - 3110265 + F 74 -8.7 -3.8679 | TTAAGAACCGTTACC GGGCAAG TTT TTTGCCC TTTCCCTATTTTCTA Avi_3749 3110309 - 3111451 + | Small-conductance mechanosensitive ion channel TERM 3451 3111481 - 3111503 + F 70 -7 -4.0896 | opp_overlap 3111483 3111499, overlap 3111499 ACCGCCAACGGGAAT GACCATTGTC TGC GATAATGGGC TTTTCAGCGCCATTT TERM 3452 3112685 - 3112716 + G 78 -2.9 -5.14163 | gap 1, overlap 3112702 CGTACAGGGCATGGA CGGCGTC-GCGGTG ATTGC CAGCGAAGATGCCG TTTTTGTTGGTCGGT Avi_3751 3111723 - 3113150 + | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 3453 3113810 - 3113791 - g 81 -3.4 -5.28176 | overlap 3113792 GCGATCTACAAAAAA CCGGAGCC GGAC AGCCCCGC CCTCGATTCCTATCT TERM 3454 3114256 - 3114237 - g 76 -3.5 -4.91511 | opp_overlap 3114238, overlap 3114238 ACCGCATTACAAAAA CGCCG CCCCGATTTC CGGCG GCTATTTCGGGCAAG Avi_3752 3113434 - 3116778 + | hypothetical protein Avi_3754 3117015 - 3119429 + | hypothetical protein TERM 3455 3119731 - 3119753 + G 80 -9.9 -4.20042 | gap 1 GGATTTTTCGCCACT GCTCGAACGG CTAG CCGT-CGAGC TTTTCGAATATTGGT Avi_3755 3119444 - 3120322 + | hypothetical protein TERM 3456 3120448 - 3120482 + F 81 -9.4 -4.14598 | gap 1, opp_overlap 3120452, overlap 3120438 3120450 GATGCGGATCGTCAA GC-CACGGTCCTGTT GCAGGA AACACGACCGTGTGC TTTCGTTTCGTTGAA TERM 3457 3120450 - 3120479 + F 72 -10.8 -3.08604 | opp_overlap 3120452, overlap 3120438 3120448 TGCGGATCGTCAAGC CACGGTCCTGTT GCAGGA AACACGACCGTG TGCTTTCGTTTCGTT Avi_3756 3120501 - 3121814 + | hypothetical protein Avi_3757 3121907 - 3122119 + | hypothetical protein TERM 3458 3123429 - 3123416 - g 74 -2.3 -5.02074 | CGACCTGCCAAAAAA GGTGG CGAT CCAGC TCAACGACACCCATC TERM 3459 3124642 - 3124665 + G 71 -11.6 -3.23393 | overlap 3124639 3124640 GCGAACTGTCCCAGG CGCTGGCCGC CATT GCGTCCGGCG TGTTCTCGCCTGACG glgP 3122436 - 3124904 + | glycogen phosphorylase TERM 3460 3124928 - 3124972 + G 82 -13.6 -3.21593 | gap 1, opp_overlap 3124920, overlap 3124927 ACAACCAGGCAGACG CAGGT-ATCAGCCGAGAGCGG CCAT CCGCCCTCCGCTGACCACCTG TCTTCTGCCGAGATC glgB 3124904 - 3127153 + | 1,4-alpha-glucan branching enzyme TERM 3461 3127324 - 3127342 + G 79 -13.1 -3.27408 | opp_overlap 3127337, overlap 3127321 3127319 AAGGAGCTGACCGAC CGGCGGG CAAAA CCCGCCG TCTATTTCGGTGGCA TERM 3462 3127812 - 3127794 - g 71 -8 -4.07568 | TGCCTTCGTCGAAAA GCCCGCCG ATC CACCGGGC ATTCCCGGCAACGAG glgC 3127228 - 3128493 + | glucose-1-phosphate adenylyltransferase glgA 3128499 - 3129935 + | glycogen synthase pgm 3129943 - 3131571 + | phosphoglucomutase glgX 3131586 - 3133535 + | glycogen debranching enzyme GlgX TERM 3463 3133630 - 3133640 + F 73 -4 -4.82901 | overlap 3133627 GATAAGCGCCCACAT TCAT TGA ATGA TTTTTATAGAAAACG nodN 3133839 - 3134327 + | nodulation protein N Avi_3766 3134329 - 3135378 + | hypothetical protein TERM 3464 3135381 - 3135407 + T 79 -12.4 -3.12668 | opp_overlap 3135385 3135387, overlap 3135373 3135385 CTGGACGGCCTGATA CGAAGAGTCATT GAA AATGACACTTCG TATTCCCCTTTCGAA Avi_3768 3137487 - 3135958 - | hypothetical protein TERM 3465 3136501 - 3136481 - G 95 -6.7 -5.34055 | overlap 3136485 3136486 ACAAACACCAAAAAA CCAACCGGA CCG CCCGGCAGG CCCGACAGCATATGC Avi_3769 3138036 - 3137497 - | hypothetical protein TERM 3466 3138159 - 3138202 + H 75 -6.8 -4.35524 | opp_overlap 3138159, overlap 3138161 CAAGTTCGCCTAAAG TTCTACGGCATGATACGTTT CATC AAGCGAATGATGCTGTAGCA TTTTAAATTTGCCGC Avi_3770 3138301 - 3138525 + | hypothetical protein TERM 3467 3138572 - 3138556 - T 100 -15.1 -4.3208 | opp_overlap 3138556 CTCCAGAACTGAAAA GGCCGGC AAT GCCGGCC TTTTGTATCGAACTG TERM 3468 3138556 - 3138572 + T 100 -15.1 -4.53303 | opp_overlap 3138556 CTCCAGAACTGAAAA GGCCGGC AAT GCCGGCC TTTTGTATCGAACTG Avi_3772 3139410 - 3138601 - | O-linked GlcNAc transferase TERM 3469 3139746 - 3139736 - R 78 -8.2 -4.21402 | overlap 3139732 ACCGAAAAGTAGAAA CCGG TTT CCGG ATAAATCCGATACGA TERM 3470 3139904 - 3139879 - R 100 -11.8 -4.88228 | ATTTAACACGAAAAA GCGGCCGCGA ACTTGA TCGCTGCCGC TCAATCGGATCATGT rpsU 3140189 - 3139950 - | 30S ribosomal protein S21 soxB 3140646 - 3141899 + | sarcosine oxidase beta subunit soxD 3141916 - 3142236 + | sarcosine oxidase delta subunit soxA 3142233 - 3145226 + | sarcosine oxidase alpha subunit TERM 3471 3145344 - 3145369 + G 72 -9.7 -3.737 | gap 1, overlap 3145315 3145331 ACGCATCTCGCTGCG GGCCGGAG-CGG ATG CTGTCTCCGGTC TTTCCTCAGCCCTTG soxG 3145219 - 3145785 + | sarcosine oxidase gamma subunit Avi_3779 3147169 - 3146108 - | nucleoside-diphosphate-sugar epimerase protein TERM 3472 3146594 - 3146562 - G 72 -9.7 -3.68073 | opp_overlap 3146562 3146575 CATTGCACGGAAGAA CCGGGGAAACGGAAG GGT CGCCCGGTTTCCCGG CAGAGCGTCGCATAG TERM 3473 3147528 - 3147552 + G 75 -9.3 -3.86015 | gap 1, opp_overlap 3147528 ACCCGCCGTCGAATA CCGGCTGACC CCGCTC GG-CAGCCGG TTTATCGAGCCGGTC Avi_3780 3147268 - 3147660 + | transcriptional regulator protein Avi_3781 3147998 - 3147717 - | hypothetical protein Avi_3782 3148245 - 3147985 - | DNA-damage-inducible protein Avi_3784 3148402 - 3148650 + | hypothetical protein Avi_3785 3148640 - 3148930 + | stability protein StbE TERM 3474 3149028 - 3148993 - f 75 -11.9 -2.91144 | opp_overlap 3148990 3148990, overlap 3148990 3149020 TTATGCGCTAAACCA TCCCCAGGATCGGTT GTAACG AACCGATCCCGGAGC GTCGAACCTCCGCAA TERM 3475 3149108 - 3149070 - f 70 -6.7 -4.07568 | gap 1, opp_overlap 3149094, overlap 3149072 TGTCGGTCGTTAAAA GACACC-CCTCAGCCATA GGTT TGTGGCTGAGGCGGTGGA CCATGCCTATATGGT TERM 3476 3149106 - 3149072 - f 100 -13.7 -3.63744 | gap 1, opp_overlap 3149094, overlap 3149070 TCGGTCGTTAAAAGA CACC-CCTCAGCCATA GGTT TGTGGCTGAGGCGGTG GACCATGCCTATATG TERM 3477 3149624 - 3149612 - g 80 -4.7 -4.91511 | overlap 3149599 AGCGGAGCATAAAAA CCCCG AAA CGCGG CAGCAGATTGAACAG Avi_3786 3149289 - 3149756 + | hypothetical protein Avi_3787 3149874 - 3150146 + | hypothetical protein Avi_3788 3150187 - 3150393 + | hypothetical protein Avi_3789 3151534 - 3150428 - | periplasmic mannitol-binding protein TERM 3478 3150890 - 3150904 + g 75 -5.6 -4.56597 | overlap 3150881 GCCGATCCATTCGGC GGCGTC GAT GGTGCC TTTTTCCAGCGCCGG Avi_3790 3151736 - 3152500 + | hypothetical protein Avi_3791 3153610 - 3152651 - | dehydrogenase pckR 3154648 - 3153623 - | transcriptional regulator LacI family TERM 3479 3153868 - 3153840 - G 71 -12.4 -2.91264 | gap 1, opp_overlap 3153833 CCGGTGACGGATATA TCGCG-GCCCGGC ACCA GCCCGGCACGCGA TATGCCATTCATCAA TERM 3480 3153915 - 3153926 + g 74 -7.2 -4.36914 | opp_overlap 3153913, overlap 3153913 TCGTTCCAGCACACC GCCG CCGT CGGC TTTTGTGGCAGCGAC Avi_3793 3155298 - 3154756 - | transcriptional regulator MarR family Avi_3794 3155388 - 3156209 + | creatinine amidohydrolase Avi_3796 3156258 - 3157355 + | hypothetical protein Avi_3798 3157411 - 3158397 + | hypothetical protein TERM 3481 3158430 - 3158447 + F 100 -12.7 -5.72254 | opp_overlap 3158430 ACCATGCCAAGAAAA CCAGGGC TAAT GCCCTGG TTTTTTATTATTTAA TERM 3482 3158447 - 3158430 - f 100 -12.7 -4.66318 | opp_overlap 3158430 ACCATGCCAAGAAAA CCAGGGC TAAT GCCCTGG TTTTTTATTATTTAA TERM 3483 3159451 - 3159429 - g 75 -9 -4.07568 | overlap 3159430 TGCCGGCCTGGAAAA GCGCCGCCTG GAG CAGGAGGCGG ATGCCAGCCGCGCCA TERM 3484 3159450 - 3159430 - g 76 -12.5 -3.04398 | overlap 3159429 GCCGGCCTGGAAAAG CGCCGCCTG GAG CAGGAGGCG GATGCCAGCCGCGCC TERM 3485 3160384 - 3160356 - g 79 -13.1 -3.37493 | opp_overlap 3160373, overlap 3160332 3160357 GGTCGAAGAGACCAA TGCCATCAGCCAG ACG CTGGCCGACGGCG CCATCTCACTGGCAG TERM 3486 3160383 - 3160357 - g 85 -16.6 -2.62175 | opp_overlap 3160373, overlap 3160332 3160356 GTCGAAGAGACCAAT GCCATCAGCCAG ACG CTGGCCGACGGC GCCATCTCACTGGCA Avi_3799 3158647 - 3160452 + | methyl-accepting chemotaxis protein TERM 3487 3160533 - 3160553 + T 93 -11.1 -4.41956 | opp_overlap 3160533 GCTCAGAAACAAAAA TGGCGGCCA CTT TAGCCGCCA TTTTCCTATGTATCT TERM 3488 3160553 - 3160533 - T 100 -13.3 -5.38054 | opp_overlap 3160533 GCTCAGAAACAAAAA TGGCGGCCA CTT TAGCCGCCA TTTTCCTATGTATCT Avi_3800 3161279 - 3160578 - | outer membrane protein TERM 3489 3161411 - 3161437 + H 91 -8 -5.07011 | CCGCCAGTATTCAAG GATGAAGTGTGG CTT CCATGCATCATC TTTTTGATTTCTATC TERM 3490 3161441 - 3161454 + H 79 -3.9 -5.06414 | CCATGCATCATCTTT TTGAT TTCT ATCAA TTTTTCTTCGAACAA TERM 3491 3162905 - 3162888 - g 78 -9.1 -4.15788 | overlap 3162898 AATGTCGTCAACAAA CTCCAGC AATC GCCGGAG TGGAAGGACACCGCC Avi_3801 3161700 - 3163328 + | Phospholipase C protein TERM 3492 3163884 - 3163921 + G 76 -7 -4.41241 | overlap 3163915 CATGTTCTGGGATGG GC-GCGCCGACAGTCTGG AAGA CCAGGC-GTTGGGGCCGC TTTTGTCGCCCTTTG TERM 3493 3164211 - 3164200 - g 81 -3.6 -5.06451 | GACGATCCGAAAAAA GGCA ATTG CGCC TCCTGCCACCTGGAC Avi_3802 3163354 - 3164718 + | hypothetical protein Avi_3804 3165520 - 3164930 - | acetyltransferase TERM 3494 3165593 - 3165565 - R 89 -13.2 -3.322 | overlap 3165583 ATGGTGAGAGAGCAA TCCTGCCGGG GAAAATTAG CCCGGCAGGA GCACGATCAGATCAC TERM 3495 3165642 - 3165612 - R 79 -12.6 -2.98719 | CGATCAGATCACATA GGCTTTCAGCGGTT CGA AACCGTTGAACGCC ACCGCCGAATAGGTG speF 3166733 - 3165600 - | ornithine decarboxylase TERM 3496 3166769 - 3166757 - H 71 -3.4 -4.8048 | overlap 3166759 CTTCCATAGTAAAAA GGTT ACCGG AACC CAAAGAGCTCCGGAT TERM 3497 3167179 - 3167205 + H 100 -4.4 -5.82281 | opp_overlap 3167183, overlap 3167183 AACTCGCCGTCATAA TCAAGCGGTTTT TGC AAGCCCGCTTCA TTTTTTTATGTGTTT ptxR 3167282 - 3168211 + | transcriptional regulator LysR family Avi_3809 3168419 - 3169078 + | hypothetical protein Avi_3811 3169072 - 3170241 + | hypothetical protein Avi_3812 3170435 - 3170223 - | hypothetical protein Avi_3813 3171121 - 3170432 - | acetyltransferase TERM 3498 3170803 - 3170813 + g 77 -2.4 -5.08824 | CAACCGATCCAACCT CGAC CAC GCCG TTTTTTGGATCAGGC TERM 3499 3171333 - 3171313 - R 86 -14 -2.88999 | TTCGGAGACAGCAGA CCCTCGGG ACAGG CCCGAGGG TGACGACGTGCCGAG TERM 3500 3171372 - 3171394 + r 100 -14.9 -4.64676 | opp_overlap 3171369 TTGTCAATAAACTGG GCAACGGCG ATTTC CGCCGTTGC TTTTGTTGGGCGTCA Avi_3814 3172117 - 3171413 - | hypothetical protein TERM 3501 3172186 - 3172158 - R 100 -19.6 -3.38297 | AGCAAGAGATAGGAA CGCCCGCGCCCT TTCCC AAGGCGCGGGCG TCAAATTACGACATA Avi_3816 3172856 - 3172218 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase Avi_3819 3173016 - 3173510 + | hypothetical protein Avi_3820 3173488 - 3174414 + | hypothetical protein Avi_3821 3174425 - 3175123 + | hypothetical protein Avi_3822 3175220 - 3175597 + | hypothetical protein TERM 3502 3175775 - 3175820 + G 72 -9.7 -3.67175 | gap 1, overlap 3175757 3175771 GTTCGAAAGCTTCCG CGAACCGCTTGATGCGCTCTGC AAG GCGCAGGGCGTCAAG-GGTACG TTGCTTTTGGCCCAT Avi_3823 3175674 - 3176618 + | hypothetical protein Avi_3825 3177420 - 3176671 - | hypothetical protein Avi_3826 3177992 - 3177534 - | hypothetical protein bgl 3179362 - 3177989 - | beta-glucosidase Avi_3829 3179599 - 3180645 + | hypothetical protein Avi_3830 3181885 - 3180704 - | NAD binding oxidoreductase TERM 3503 3181701 - 3181720 + g 77 -10 -3.86897 | gap 1, opp_overlap 3181693 GGATCAAGCCCCAGA TCCC-GGCC CGA GGCCAGGGA TTTCTCCGGCGTGGA Avi_3831 3182956 - 3181904 - | hypothetical protein TERM 3504 3182944 - 3182930 - G 70 -4.2 -4.58685 | AAACTGGCCCAAAAA CAAGGC AGG GCCTTT AATCGTCTTCATAAA TERM 3505 3183041 - 3183011 - R 100 -14.2 -4.9448 | ATCTAGCAAAGAAAA CTGACAGGGAAA ACCTCCA TTTCCCTGTCAG CGCATCAACGCGATC xylA 3184362 - 3183055 - | xylose isomerase TERM 3506 3184002 - 3184012 + g 83 -5.4 -4.98616 | opp_overlap 3183999 3184002, overlap 3183996 CAAAGTAATCGACAA TCTC ATT GAGA TTTTTGGTATTTTCC xylB 3185869 - 3184400 - | xylulokinase Avi_3834 3186933 - 3185893 - | transcriptional regulator LacI family TERM 3507 3186772 - 3186756 - G 82 -10.1 -4.16443 | AGATGAAAGGATAAA TCCGGCC TTT GGCCAGA TTGGCAGCCGCCAAA TERM 3508 3187050 - 3187029 - R 100 -10.1 -5.68039 | opp_overlap 3187027 AAACGCACAAAAAAA GGCCGCC TGTTGAGG GGCGGCC AAGTTTCTGCGGTGG TERM 3509 3187107 - 3187080 - R 72 -10 -3.34013 | GATCGCGGGAATTAA TGGTCAGGTAAA AACC TCTACCTAACCA GAATGACGGGGGGTC emrB 3188751 - 3187174 - | MFS permease TERM 3510 3188277 - 3188248 - G 74 -12.9 -2.87931 | gap 1 GGCATGGCTGATATA GCCGCCAACCGTCG GGC CGATGGTTGGCG-C AAGCGTTGCGACAAG emrA 3189963 - 3188788 - | multidrug resistance efflux pump TERM 3511 3190017 - 3190033 + H 76 -9.3 -3.85698 | overlap 3190018 GATCCTGTGCATCGA CGGCGCG GAT CGCGCCC TTTCTGGGAGAAACA TERM 3512 3190018 - 3190032 + H 78 -12.8 -2.91276 | overlap 3190017 ATCCTGTGCATCGAC GGCGCG GAT CGCGCC CTTTCTGGGAGAAAC TERM 3513 3190106 - 3190084 - H 78 -9.2 -3.95071 | opp_overlap 3190084 CAAAGGCGGAAACAA TCGAACGGAA CCG TTCGGTTCGA TTTGACATAGGCCAA TERM 3514 3190084 - 3190106 + H 73 -9.2 -3.59979 | opp_overlap 3190084 CAAAGGCGGAAACAA TCGAACGGAA CCG TTCGGTTCGA TTTGACATAGGCCAA Avi_3838 3190215 - 3190907 + | transcriptional regulator TetR family TERM 3515 3191071 - 3191092 + G 75 -12.3 -3.22653 | overlap 3191069 TTACCTATTTGCTCA GCGATCCGG CGGC CTGGATCGC TCTTGTGACGCTGAT Avi_3839 3191046 - 3191810 + | hypothetical protein TERM 3516 3191816 - 3191851 + F 93 -14.8 -3.01712 | opp_overlap 3191825 3191829, overlap 3191828 GCTGCATTGACATTG ATCGAGAGAGCAAGGG GCTC CCCTTGCTCTCTCAAC TCTTGCACAGCGGCA TERM 3517 3191842 - 3191825 - f 75 -11.3 -2.92091 | opp_overlap 3191816 3191828, overlap 3191829 ACATTGATCGAGAGA GCAAGGG GCTC CCCTTGC TCTCTCAACTCTTGC TERM 3518 3192077 - 3192090 + G 75 -5.9 -4.56597 | TCTTCTATCTTTGGC CCTGG TTTG CCGGG TTTTTCCCCGCAACG Avi_3841 3191947 - 3192654 + | hypothetical protein nth 3193398 - 3192634 - | endonuclease III TERM 3519 3193580 - 3193593 + G 77 -2.3 -5.07486 | TCCTGACGACCGGTG CCTGG CCAA TCGGG TTTTTCTTCGGGCTG Avi_3844 3193477 - 3193920 + | hypothetical protein ada 3194002 - 3194889 + | methylated-DNA--protein-cysteinemethyltransferase Avi_3846 3195015 - 3195461 + | hypothetical protein Avi_3848 3195670 - 3196662 + | hypothetical protein Avi_3849 3197724 - 3196747 - | transcriptional regulator TERM 3520 3197475 - 3197485 + g 74 -8.2 -4.24002 | CCACGGCTTCATCCA GGCC GAA GGCC TTTTCCAGTTTCACG tal 3197936 - 3198892 + | transaldolase TERM 3521 3198976 - 3198996 + T 86 -14 -2.8655 | CTCGGCATTTCGTCA CCCTCGGG CCTGT CCCGAGGG TCTGCTGTCGCTGAA TERM 3522 3199112 - 3199133 + T 100 -15.1 -4.8622 | TTGTCAGCAGTCTGA GGGCGCGGC AAAG GCTGCGCCC TTTTTCGTTACCGCG hflK 3199747 - 3199154 - | HFLK protein TERM 3523 3199696 - 3199682 - G 70 -2.1 -4.81734 | gap 1, overlap 3199683 AAATACCAGGAAAAA CGCCAG CATG CTG-CG CCCGGTCATTCGGCT TERM 3524 3199771 - 3199782 + H 70 -7.2 -4.0371 | opp_overlap 3199771 CCTGTTGCTGGAAAA GGCC TGCT GGCC TTTCTGTGGGCGGTG TERM 3525 3199782 - 3199771 - H 70 -7.2 -4.07568 | opp_overlap 3199771 CCTGTTGCTGGAAAA GGCC TGCT GGCC TTTCTGTGGGCGGTG TERM 3526 3199787 - 3199807 + H 74 -7.6 -4.1466 | gap 1 GCCTGCTGGCCTTTC TGTGG-GCG GTGA CGCGCCACA TTTTCACGGTTACAT TERM 3527 3200693 - 3200712 + G 90 -10 -4.68593 | gap 1 ATGTTGGCGCTGTGC TGCACCGGC ATT GCCGG-GCA TTTTTCGCTGATCAA Avi_3854 3200048 - 3200953 + | hypothetical protein TERM 3528 3201915 - 3201903 - g 71 -6.9 -4.1891 | GGCGCTGAAGAGAAA CCGGC AGC ACCGG CACATGACGCCGCCC Avi_3855 3201075 - 3202325 + | hypothetical protein TERM 3529 3202383 - 3202348 - T 82 -12 -3.54638 | opp_overlap 3202343 3202353 AGAATCGCCCCGAAA TAGCATCGTGCAGA ACACGCAA TCGGCACGATGCTA TAGGGCTTTTCAGCC lysS 3203915 - 3202419 - | lysyl-tRNA synthetase TERM 3530 3203835 - 3203852 + g 87 -12.7 -3.85698 | GACATCGCCGATCTG CTGGCGC AGCA GCGCCAG TTTCTGGCGGCGCAC TERM 3531 3203986 - 3204010 + r 73 -9.2 -3.70902 | opp_overlap 3203975 3203986 AAACGGCTATGATAA GCCCTCCCTC ATAAA GGGGGAGAGC TTTAGCTGTCAGGCC gltX 3205473 - 3204019 - | glutamyl-tRNA synthetase TERM 3532 3205782 - 3205819 + r 95 -15.8 -2.72829 | gap 1, opp_overlap 3205790, overlap 3205790 AAACCCCCGTCCCCC GCTTGAAAGCCTGCGTT CCGCC AACGCAGGCTTTCG-GC ATTTCAGGCCCTCTA TERM 3533 3205790 - 3205812 + r 93 -13.5 -3.63968 | opp_overlap 3205790, overlap 3205782 GTCCCCCGCTTGAAA GCCTGCGTT CCGCC AACGCAGGC TTTCGGCATTTCAGG TERM 3534 3205812 - 3205790 - R 90 -13.5 -3.53012 | opp_overlap 3205790 3205782 GTCCCCCGCTTGAAA GCCTGCGTT CCGCC AACGCAGGC TTTCGGCATTTCAGG Avi_3860 3207620 - 3205860 - | transporter TERM 3535 3206694 - 3206712 + g 70 -11.7 -2.71712 | overlap 3206693 3206696 CGATCCCGGCCCGAC CACCGCC TCGAT GGCGGTG ATTTCACCGCCCGAA Avi_3861 3209152 - 3207815 - | TPR repeat protein Avi_3862 3210519 - 3209149 - | secretion protein-like protein TERM 3536 3209255 - 3209282 + gr 83 -9.8 -4.13945 | opp_overlap 3209262 ACCAGCGTCATCCCG GCAATCAGGCTG AAAT CCGCCGGATTGC TTTTCAGATGCGGGT Avi_3863 3212701 - 3210491 - | ABC transporter nucleotide binding/ATPase protein Avi_3864 3212981 - 3214183 + | glycosyltransferase protein Avi_3865 3215678 - 3214167 - | TPR repeat protein Avi_3866 3220708 - 3215675 - | TPR repeat protein Avi_3867 3221279 - 3220890 - | hypothetical protein TERM 3537 3221354 - 3221316 - R 78 -11 -3.55219 | opp_overlap 3221330, overlap 3221330 AATGCCACGATACAA CACCGAACCGAAAACAGG GAA CCGGTTTTCGATGCCGTG CAGTGCTCGTACACA Avi_3869 3226136 - 3221418 - | Ca 2+ binding protein TERM 3538 3225552 - 3225571 + g 87 -7.8 -4.79352 | overlap 3225549 GGAACCGAGATCCAC GCGGCG CGTCTGGT CGCCGC TTTTATTCTCCATAA TERM 3539 3225901 - 3225866 - G 77 -8.3 -4.4009 | opp_overlap 3225895, overlap 3225894 3225897 TGGTATCGTAGAAAA TCGAATCCGCACCGG TGCCGC CCAAAACGGATTCGA CATTGGACAATGTCA Avi_3870 3226938 - 3226300 - | uncharacterized ABC-type transport system permease protein TERM 3540 3226816 - 3226802 - G 80 -9.2 -4.11751 | overlap 3226792 ATCAACGCGCCAAAA GCCCGG TCG CCGAGC GCCTCGAAAATATCA TERM 3541 3226990 - 3226975 - R 77 -6.1 -4.66833 | overlap 3226977 GCGGAACCCGAAAAA CGCTC CGCCGC GAGCG GCATATGGAAAGTCC Avi_3871 3228902 - 3227049 - | ABC transporter nucleotide binding/ATPase protein Avi_3872 3230145 - 3228982 - | hippurate hydrolase TERM 3542 3229310 - 3229272 - G 71 -13 -2.57211 | opp_overlap 3229304 3229307, overlap 3229271 3229275 AGCCCCGGTGATAAT GCACTTCGGCGATAGCGC CAT GCGCCATGGCCGTGGCGC TTGCCACTTCCTGCA TERM 3543 3229649 - 3229629 - G 73 -12.5 -2.76261 | opp_overlap 3229628 3229628, overlap 3229628 TGCGAATGGCGAAAT CGCCAAGCG GCA CGCCCGGCG CATTGTGCATGCCGA Avi_3874 3230389 - 3232146 + | ABC transporter substrate binding protein (oligopeptide) TERM 3544 3232180 - 3232206 + F 78 -10.8 -3.54459 | CATATTGATACGCGA CATGCTGACGCC ACT GACGCCAGCATG TTTGAAGCGCCTTGC TERM 3545 3232474 - 3232459 - f 71 -3.2 -4.77165 | overlap 3232460 GCTGCCAGAAGAAAA CTCTCG ACCA CGAGAT TAACAAGGGAACAGC Avi_3875 3232495 - 3234201 + | ABC transporter substrate binding protein (oligopeptide) TERM 3546 3234244 - 3234206 - f 71 -10.8 -2.88366 | opp_overlap 3234204 3234202, overlap 3234202 3234205 GCGCCAAGTAACAAG CGCCTTGCCGGACCCGCA TGA CGCGGGTCCGGTGAGCTG GCGGTTATCGGCACC TERM 3547 3234792 - 3234813 + G 72 -8.7 -3.9122 | CACCTTCGTCTCTAT GGTCGGC TATTCCGT GCCGACC TTCTTTACCGGCGTG Avi_3876 3234328 - 3235338 + | ABC transporter membrane spanning protein (oligopeptide) TERM 3548 3235806 - 3235820 + G 74 -7 -4.32034 | overlap 3235807 TGCGCGCCGCGTTCG GCCCGG AAG CCGGGA TTTTCATCCTGATCG TERM 3549 3235958 - 3235909 - g 72 -4.7 -4.60041 | ACTGACGGTGAAAAA CCAGGAATTCGTGCTGGCCGCCA AGGC CAGCGGCATGCGGGAATACCGGG TGATCCTCAAGCATA Avi_3878 3235331 - 3236248 + | ABC transporter membrane spanning protein (oligopeptide) TERM 3550 3236225 - 3236250 + T 86 -9 -4.4009 | ATCCGTGATGCGCTC GATCCGCGCT CGATGA AGCGCTGATC TTTTATCCGGTCAGG Avi_3879 3237326 - 3236274 - | ABC transporter Avi_3880 3240145 - 3237401 - | ABC transporter nucleotide binding/ATPase protein TERM 3551 3239942 - 3239900 - G 77 -13.4 -2.87132 | gap 1 GCCCTGTGGCATATA GGCGATGCGCGGCTGCACG TCGGTG CGCGCACCGGCGC-TCGCC ATATCCGCCCCAAGC TERM 3552 3239965 - 3239979 + g 95 -4.2 -5.75342 | overlap 3239957 3239953 CCCCAAGCGCCGTGA TCCGGC CTT GTTGGA TTTTTTTTGCGCCCG Avi_3881 3241197 - 3240157 - | HlyD family secretion protein TERM 3553 3240232 - 3240260 + g 73 -11.7 -3.05844 | overlap 3240249 CAGATCGGATTGCAG CCGATCCGGCC AGACCGC GGCCGCATCGG TCTTCACATAGCCAA Avi_3882 3241399 - 3242400 + | hypothetical protein phnM 3242513 - 3243679 + | phosphonate metabolism protein PhnM dfpD 3244435 - 3243683 - | ABC transporter Avi_3885 3245265 - 3244432 - | ABC transporter Avi_3886 3246167 - 3245262 - | ABC transporter membrane spanning protein (oligopeptide) TERM 3554 3245571 - 3245559 - G 71 -10.5 -3.62572 | CAGCACGATGCGAAA GGGCG AAG CGCCC ATCAGCTTGACGGCA Avi_3887 3247252 - 3246185 - | ABC transporter membrane spanning protein (oligopeptide) TERM 3555 3247198 - 3247231 + g 84 -13.1 -3.77808 | overlap 3247201 CTGCCTTGAACCCTC TTAACTGCCGGTCGC GCCT GCGACCGGCAGATGC TTGTGTTGTGGTGAG TERM 3556 3247201 - 3247228 + g 88 -17 -2.97393 | overlap 3247198 CCTTGAACCCTCTTA ACTGCCGGTCGC GCCT GCGACCGGCAGA TGCTTGTGTTGTGGT TERM 3557 3247274 - 3247286 + r 70 -4.1 -4.67904 | opp_overlap 3247282 TGCTCCTGATCAATC CTTGG AAA TCAAG TTTTTGAGGTTGCTG Avi_3888 3248920 - 3247268 - | ABC transporter substrate binding protein (oligopeptide) Avi_3889 3250021 - 3248969 - | dipeptidase TERM 3558 3249895 - 3249880 - G 73 -11.8 -3.1637 | AGAGACCGCCACCAA GCCCGC CCCG GCGGGC GCGTGGCGCATCGAT kdgK 3251180 - 3250266 - | 2-dehydro-3-deoxygluconokinase Avi_3891 3251891 - 3251196 - | transcriptional regulator GntR family Avi_3892 3252176 - 3253576 + | Glucuronate isomerase protein TERM 3559 3253845 - 3253835 - f 70 -4.6 -4.52345 | ACAGCACCAAAGAAA GCGC TGG ACGC CACTGCAAGTCTCTT kdgF 3253964 - 3254305 + | pectin degradation protein TERM 3560 3255035 - 3255008 - g 72 -4.7 -4.56597 | overlap 3255015 TCTGGTGCTGAAAAA CGAGGAAGGCG CGATTT CGCCGCCCTGG TCGATCCATTCGGGT Avi_3894 3254325 - 3255146 + | deoxyuronase TERM 3561 3255414 - 3255435 + G 71 -10.1 -3.53012 | opp_overlap 3255404 ACAATGCCGGTATCA TCCGCCGCG CCGA TGCGGTGGA TTTCACCGAAGCCGA kduD 3255143 - 3255889 + | 2-deoxy-D-gluconate 3-dehydrogenase uxuB 3255867 - 3257336 + | Altronate oxidoreductase TERM 3562 3257709 - 3257719 + G 71 -8.2 -4.07687 | overlap 3257697 TTGCGCGCGGCGGCA CCGC CTT GCGG TTTTCCGAACCGCAT uxuA 3257333 - 3258526 + | mannonate dehydratase TERM 3563 3259109 - 3259119 + G 74 -2.4 -4.89852 | CACCCATCCCAATGT CGGC GCT GCGG TTTTTGTCGGTCTGG TERM 3564 3259665 - 3259626 - g 72 -4.8 -4.58663 | gap 1, overlap 3259628 3259647 ACCATTCTGGAAAAA TC-GCTGGGCGCTTCCGCC AAA GCCGGCAGCACGCCGCTGA CCGACGTGCTGAACT uxaA 3258519 - 3260051 + | uronate isomerase TERM 3565 3260082 - 3260063 - T 100 -15 -4.68593 | opp_overlap 3260063 GTGAGGATTCAAAAA GCCGGGTG TTTC CACCCGGC TTTCCATCTCTCAAA TERM 3566 3260063 - 3260082 + T 100 -15 -3.74077 | opp_overlap 3260063 GTGAGGATTCAAAAA GCCGGGTG TTTC CACCCGGC TTTCCATCTCTCAAA pntB 3261542 - 3260109 - | NAD(P)+ transhydrogenase beta chain pntA 3263136 - 3261559 - | NAD(P) transhydrogenase alpha subunit gbpR 3264367 - 3263435 - | transcriptional regulator LysR family chvE 3264594 - 3265658 + | sugar binding protein TERM 3567 3265664 - 3265700 + F 100 -10.2 -5.18726 | opp_overlap 3265665 3265667, overlap 3265668 GCTGAAGTAACAAAA AGCGGCCGGAACTTTT CAAGC AAAAGTTCCGGCTTCC TTTTTATTGTCGCCC TERM 3568 3265699 - 3265665 - f 100 -11.5 -5.1963 | opp_overlap 3265664 3265668, overlap 3265667 CTGAAGTAACAAAAA GCGGCCGGAACTTTT CAAGC AAAAGTTCCGGCTTC CTTTTTATTGTCGCC TERM 3569 3265697 - 3265667 - f 77 -12.7 -2.81332 | opp_overlap 3265664 3265668, overlap 3265665 GAAGTAACAAAAAGC GGCCGGAACTTTT CAAGC AAAAGTTCCGGCT TCCTTTTTATTGTCG TERM 3570 3265668 - 3265696 + F 100 -16.2 -3.96481 | opp_overlap 3265667 3265665, overlap 3265664 AAGTAACAAAAAGCG GCCGGAACTTTT CAAGC AAAAGTTCCGGC TTCCTTTTTATTGTC gguA 3265805 - 3267319 + | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 3571 3267420 - 3267432 + G 75 -5.5 -4.6902 | overlap 3267407 GTTGATCGCGCTCGT CGCCA TCA TGGTG TTTTTCCAGTTCTAC gguB 3267319 - 3268518 + | ABC transporter membrane spanning protein (sugar) TERM 3572 3269005 - 3268985 - g 71 -11.1 -3.21276 | overlap 3268983 CGGCCCGTGACAATA TGCATGCCG ACA CGGCAGGCA TGAGCGACTCGATGA gguC 3268696 - 3269661 + | hypothetical protein TERM 3573 3269686 - 3269654 - f 87 -14.2 -3.01712 | CCTTTGCCGTCAAGA CGCTTTGATGCCGC AATCG GCGGCATCAATACG GCCTGAATAATAGAA ilvD 3269792 - 3271501 + | dihydroxy-acid dehydratase TERM 3574 3271512 - 3271548 + F 72 -10.8 -3.05384 | ATTGATCCATCTCTC TCCCGTCAAGCGCGCC CCAAA GGCGCGCTTGACACCA TTCAATGACGAGACA TERM 3575 3272439 - 3272477 + G 77 -10.8 -3.85698 | opp_overlap 3272438 3272437 3272441 CGCAGCCGCGAAAGC GACGTCGATTTCCAGCCG CTT CGGCTGGTTGCCGACGCC TTTCTGACGGCGGAG Avi_3910 3271575 - 3272522 + | dehydrogenase TERM 3576 3273410 - 3273432 + G 72 -9 -3.89212 | overlap 3273411 3273413 TCGGCTTTACCGGCT CGCTGCGCGG TGG CCGCGCGCTG TTTGATCTCTGCGTG TERM 3577 3273411 - 3273430 + G 74 -11.4 -3.53018 | gap 1, overlap 3273410 3273413 CGGCTTTACCGGCTC GCTGCGCGG TGG CCGCGC-GC TGTTTGATCTCTGCG Avi_3912 3272692 - 3274206 + | dehydrogenase TERM 3578 3274292 - 3274241 - f 72 -8.5 -3.83323 | opp_overlap 3274239, overlap 3274253 CTGACATAACCGAAA CGGGTGCAGAGATCGGCCAGCCC TTCGTT GGGCTTGCCGATTGGGGCACCAG CAATTTCCGCCTCTG TERM 3579 3274280 - 3274253 - f 78 -12.7 -2.8806 | opp_overlap 3274239, overlap 3274241 AAACGGGTGCAGAGA TCGGCCAGCCC TTCGTT GGGCTTGCCGA TTGGGGCACCAGCAA TERM 3580 3274410 - 3274436 + G 85 -15.2 -3.07222 | opp_overlap 3274408 3274410 CGTGTTGGAAGAACA TCTGGAGGCGCT GTC AGCGCCTCTGGA TCTTCCGGTGGTGAT TERM 3581 3274441 - 3274478 + G 73 -11.9 -3.05384 | gap 1, overlap 3274464 GCGCCTCTGGATCTT CCGGTGGTGATCGCCGGC ATG GCGGGCGCTCGC-GCCGG TTGGCTGGAAGCGCC dgoK 3274309 - 3275163 + | 2-dehydro-3-deoxygalactonate kinase TERM 3582 3275491 - 3275520 + G 71 -10.7 -3.53012 | gap 1, overlap 3275478 3275492 ATTGGCCAGGCCGCC CG-GCTGGGCATGG TCT CCATGCCCGGCGCC TTTACGCCGACAGAA TERM 3583 3275492 - 3275519 + G 80 -14.2 -2.71712 | gap 1, overlap 3275478 3275491 TTGGCCAGGCCGCCC G-GCTGGGCATGG TCT CCATGCCCGGCGC CTTTACGCCGACAGA Avi_3915 3275179 - 3275826 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase Avi_3917 3275958 - 3276320 + | hypothetical protein Avi_3918 3277181 - 3276324 - | hypothetical protein TERM 3584 3276838 - 3276823 - G 72 -5.4 -4.45485 | gap 1, opp_overlap 3276827 ATCACACCGATAAAA CCGACCA CGA TGG-CGG TGATGCGCCGCCAGC TERM 3585 3277371 - 3277337 - H 100 -19 -3.30338 | opp_overlap 3277340 3277348, overlap 3277340 3277348 ATAAGTGTGCGACAA CAATTGATAAAGTCAT CGG ATGACTTTATCAATTG TCCCATGAGACCTCT TERM 3586 3277368 - 3277340 - H 100 -14.9 -3.79113 | opp_overlap 3277340 3277348, overlap 3277337 3277348 AGTGTGCGACAACAA TTGATAAAGTCAT CGG ATGACTTTATCAA TTGTCCCATGAGACC TERM 3587 3277340 - 3277368 + H 100 -14.9 -3.32844 | opp_overlap 3277337 3277340 3277348, overlap 3277348 AGTGTGCGACAACAA TTGATAAAGTCAT CGG ATGACTTTATCAA TTGTCCCATGAGACC TERM 3588 3277411 - 3277395 - g 74 -2.2 -5.0133 | overlap 3277400 GACCTCTGCAAAAAA CCAATC TGGCC GATGGG GCCGCCGAACGTATT Avi_3919 3277376 - 3278071 + | transcriptional regulator GntR family Avi_3920 3278068 - 3279348 + | cynate permease protein TERM 3589 3280282 - 3280269 - g 70 -2.3 -4.83169 | AGCGCTGGAGAAAAA CGAGA ATTT TCGCG CTGCACTGAACGCCT TERM 3590 3281627 - 3281614 - g 86 -5.9 -5.0538 | overlap 3281615 GTCGATCCGAAAAAA CCGGC CATT GCCGA AAAGACCTTTCTCGT TERM 3591 3282697 - 3282653 - g 74 -11.5 -3.53091 | ATCGTCCGGGCGAAA GCCAGGAGAC-CCGTATGCCG ATGCG CGCCAT-CGGCGTCACCTGGC TCAGTGTCGATCCGG TERM 3592 3283662 - 3283700 + G 74 -13 -2.92667 | overlap 3283660 GGCCGATAGCGTGCT GCAAGGCGCGTCGCTGAG CAT CTCGGTGTCGCGCAGTGC TAATTTCGACATTGC Avi_3921 3279601 - 3285120 + | hypothetical protein TERM 3593 3285978 - 3285963 - g 77 -2.5 -5.13473 | gap 1, overlap 3285965 3285966 ACCACACTCAAAAAA GACGCG CAGGC CGCG-C TGGAAACCGTGGCGA TERM 3594 3286520 - 3286546 + G 70 -12.2 -2.73875 | opp_overlap 3286507 CAGCGCCATCCGACT GCGCGACTGCGC TAT GCCCAGTGGCGC TCATGTTCAGCCCGG TERM 3595 3286782 - 3286748 - g 79 -12.8 -3.30124 | opp_overlap 3286742 TGGCAGGGCGGATAA CAGTGCCATTCCCGGC CTG ACCGGCTATGGCACCG CAGCCCCTGTTTTGT TERM 3596 3287177 - 3287190 + G 74 -6.7 -4.43477 | TGCGAGCGGGCGTAG TGCCA GCGT TGGCA TTTTCCTTCAATAAC pbpC 3285117 - 3287204 + | penicillin-binding protein TERM 3597 3287475 - 3287461 - f 78 -9.2 -3.90856 | AATCGCTCAACCAAA CGCGCC AAA GACGCG TATCCGGCCAGGCGA TERM 3598 3288221 - 3288209 - g 72 -4.8 -4.67697 | CCGGAAAAGAACAAA TCCG CCGCC CGGA CCATTGAGACCATCG TERM 3599 3288560 - 3288549 - g 75 -5.8 -4.56597 | overlap 3288551 TCGCCGGGTTAAAAA CAGC GCTC GCTG CACTCAAAGGCACAT TERM 3600 3289129 - 3289088 - g 70 -3.7 -4.60889 | gap 1, opp_overlap 3289095, overlap 3289090 AACGATGCGGAAAAA CAGGCGGTCGACCGACAGAT CGA ATTTGCCG-TCAACGCCCTG GCGGGGGGATTGGGG TERM 3601 3289403 - 3289389 - g 75 -10 -3.72893 | opp_overlap 3289387 CAGCCGTCGATGAAA TCACCG TGA CGGTGA AATCTTCGACCGAAC TERM 3602 3289494 - 3289458 - g 74 -2.2 -4.96848 | gap 1, overlap 3289459 TTGCCGAGACAAAAA CCGCTGCCGA-TACCTC CTCC AAGGTCGTCGCCAGCGC CATTGATGCCATGGG TERM 3603 3289771 - 3289753 - g 71 -10.2 -3.53012 | opp_overlap 3289740 3289738 CGCCGCCGGTGCAAA GCTGGTGC AGC GCACCGGC GAGGTTCTTTCGGAA mclA 3287516 - 3290047 + | methyl-accepting chemotaxis protein TERM 3604 3290942 - 3290926 - g 72 -6.5 -4.2828 | TCCCAGCGAGGAAAA CCGGG TCCGCAC CCCGG AAAACCTGGATACGC TERM 3605 3291087 - 3291072 - g 78 -9 -4.20696 | overlap 3291064 CGACCAAGCGCAAAA TGCTGC CGAT GCAGCA GGGTGACGTGCCACG lspL 3290207 - 3291226 + | UDP-glucuronic acid epimerase redA 3292466 - 3291366 - | hypothetical protein TERM 3606 3291547 - 3291531 - G 71 -10.1 -3.53012 | GCCGCCCGCCGCAAA CGGCACC AGC AGTGCCG GGCATCTGGCCCGCA TERM 3607 3292287 - 3292263 - G 74 -7.7 -4.17657 | GACCAGACCGGAAAA GCCCGTGGCTG AGA CAACGGCGGGC AATTGCACATGCTCG redB 3293814 - 3292579 - | glucosyltransferase TERM 3608 3293576 - 3293558 - G 74 -8 -4.10007 | overlap 3293547 AGAACCGGGCGAAAA CCGGGCAG ACG CCGCACGG CCCACAGGGCTTTCA Avi_3927 3295027 - 3293819 - | hypothetical protein Avi_3928 3296317 - 3295133 - | ABC transporter membrane spanning protein (oligopeptide) Avi_3929 3297312 - 3296314 - | ABC transporter membrane spanning protein (oligopeptide) Avi_3931 3299189 - 3297309 - | ABC transporter substrate binding protein (oligopeptide) TERM 3609 3297838 - 3297796 - G 72 -9.3 -3.67068 | opp_overlap 3297789, overlap 3297789 ACGAAAAGCCGGAAA CCGATCTTGC-GGAAGTGATC GGT GATCAGTTCCAGCACG-TCGG AATCGAAGGAGCTTT Avi_3932 3301114 - 3299228 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 3610 3300929 - 3300901 - G 84 -7.5 -4.77036 | gap 1 GCGGATCATTAAAAA CAACCCGGC-CA TTGATC TGTGCCAGGTTG GACTCGATCCCCATG Avi_3933 3301431 - 3302270 + | hypothetical protein Avi_3934 3303018 - 3302275 - | hypothetical protein Avi_3935 3304111 - 3303011 - | glycosyltransferase TERM 3611 3303348 - 3303317 - G 74 -13 -2.87132 | gap 1, overlap 3303322 CTGCGCCTCCAGATA GGCAAGGCCATAGGC TTC GCC-ATGGCCCGGCC ATACATAGACTGATG TERM 3612 3305368 - 3305358 - g 81 -3.2 -5.18726 | overlap 3305359 3305360 GGCCTACAAGAAAAA CGTC CCC GACA TCAGGGAGAGCCCGT Avi_3939 3304162 - 3305679 + | UDP-glucose/GDP-mannose dehydrogenase TERM 3613 3305948 - 3305962 + G 75 -9.2 -3.92075 | opp_overlap 3305931 GGCCAGGACTTCACC GGCTGC GGC GCGGCC TTTGTCCATGCCGAT Avi_3940 3305684 - 3306166 + | hypothetical protein Avi_3942 3306726 - 3306262 - | cAMP-dependent protein kinase regulatory subunit Avi_3943 3309486 - 3306766 - | ABC transporter nucleotide binding/ATPase protein TERM 3614 3306982 - 3306993 + g 71 -7.2 -4.17556 | AACACGCGCGTCGAG GCCC GGCA GGGC TTTGTTGAAGATATA TERM 3615 3309607 - 3309585 - H 95 -14.2 -3.53444 | overlap 3309569 CCAGGCTGCCGGAAA GCCATCCTGC CCA GCAGGATAGC AAAAAAACCAAACCG Avi_3945 3309827 - 3310966 + | ATP-dependent dsDNA exonuclease protein TERM 3616 3311426 - 3311408 - g 78 -3.1 -5.0538 | overlap 3311411 TGGTACGCGAAAAAA TCACCGA TCTGC TCGGTTA CGGTCCTGAACAGTT sbcC 3310963 - 3314037 + | exonuclease protein TERM 3617 3314066 - 3314092 + T 100 -16.8 -5.42862 | opp_overlap 3314069 CTCATCCGCTTTATA CGATGAGTCATT GAA AATGACTCATCG TTTTTTTGCAAATGT TERM 3618 3314089 - 3314069 - T 73 -11.3 -2.62263 | opp_overlap 3314066 ATCCGCTTTATACGA TGAGTCATT GAA AATGACTCA TCGTTTTTTTGCAAA TERM 3619 3314133 - 3314105 - T 71 -9 -3.53012 | opp_overlap 3314105 TCGTTTTTTTGCAAA TGTCTCAAACAC TTGAT GCATTTGAGACA TTGATAAGCTGCTGA Avi_3947 3316044 - 3314185 - | methyl-accepting chemotaxis protein TERM 3620 3315754 - 3315769 + g 83 -4.6 -5.04385 | GCTGAACTCCTGAAC GCAGGC CATC GCCTTC TTTTTTACCGATATA TERM 3621 3316549 - 3316573 + H 95 -14.3 -3.30854 | opp_overlap 3316549 CCAGAAACGCAAAAA TCCCGCAGCGT TTA AGGCTGCGGGA TTGATGTAAGTTATT TERM 3622 3316573 - 3316549 - H 100 -14.3 -4.84529 | opp_overlap 3316549 CCAGAAACGCAAAAA TCCCGCAGCGT TTA AGGCTGCGGGA TTGATGTAAGTTATT TERM 3623 3316694 - 3316711 + H 100 -12.7 -4.45168 | opp_overlap 3316694 TCGTTAACGGAATAA GGGTCGC TTGA GCGACCC TTTATGTTTTCGGCG TERM 3624 3316711 - 3316694 - H 91 -12.7 -3.73068 | opp_overlap 3316694 TCGTTAACGGAATAA GGGTCGC TTGA GCGACCC TTTATGTTTTCGGCG TERM 3625 3316721 - 3316733 + H 71 -9.1 -3.51934 | overlap 3316719 CGACCCTTTATGTTT TCGGC GGG GCCGA TGTTTATGAGAGAAG TERM 3626 3316930 - 3316942 + H 100 -10.5 -4.97957 | overlap 3316928 TTGATGAGAAGCTGG CGGGC ATT GCCCG TTTTCTTATTGTGTG TERM 3627 3317118 - 3317093 - H 77 -11.3 -3.25204 | gap 1, overlap 3317091 3317089 3317094 TGAGCGCTAAACAGA TGGCTCATCGAC GAA GTCGATGAG-CA TGGTCAATGAGAACG TERM 3628 3317118 - 3317094 - H 81 -12.9 -2.54801 | overlap 3317093 3317091 3317089 GAGCGCTAAACAGAT GGCTCATCGAC GAA GTCGATGAGCA TGGTCAATGAGAACG TERM 3629 3318209 - 3318222 + H 72 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTGATAAACAGT TERM 3630 3318597 - 3318613 + H 81 -9.4 -4.08546 | TTGGTCTTTCGGCGA GGGGGT CTCTC ACCCCC TTTATCGTTACTCAT TERM 3631 3319777 - 3319790 + H 80 -5.2 -4.88163 | TGCCGAACCCTATCG CCCC ACACTC GGGG TTTGTTTTGTCTTCA TERM 3632 3320377 - 3320361 - H 70 -10.9 -2.81464 | overlap 3320363 TGATCATTCATCAGA CATCGTC AAA GACGATG AACAACGAACGATCC TERM 3633 3320574 - 3320551 - H 76 -11 -3.29161 | opp_overlap 3320549, overlap 3320540 3320549 3320552 CAATGTACCAGAACA GGCACCGTTC ATAA GAACGGTGCA AACCTTATTTTTTCT TERM 3634 3320573 - 3320552 - H 90 -14.5 -2.57014 | opp_overlap 3320549, overlap 3320540 3320551 3320549 AATGTACCAGAACAG GCACCGTTC ATAA GAACGGTGC AAACCTTATTTTTTC TERM 3635 3321322 - 3321309 - H 72 -5.3 -4.57882 | CGTAAGAACAAGAAA GGTTT GCCA AAACC ACTTAAAAAGGAGTC TERM 3636 3321879 - 3321866 - H 82 -8.1 -4.54727 | overlap 3321870 TCCCCGAAAGGAAAA CCACG TCTC CGTGG CGGTCACAGGATGTC TERM 3637 3322256 - 3322276 + H 74 -9.7 -3.5594 | opp_overlap 3322255 3322252, overlap 3322273 CAGTATCAAAGGCAG TTCCGCAGT TGA GCTGCGGGA TTTCACCCCTGACTT TERM 3638 3323402 - 3323428 + H 74 -10.9 -3.22924 | opp_overlap 3323401, overlap 3323399 TCAAACCAGATATAG GGTGTGGAATG GTCTA CATTCCGCGCC TATTCCTCATTTGGA TERM 3639 3323682 - 3323652 - H 71 -9.6 -3.51365 | overlap 3323653 GCAGATGGTATACAA CGGCGCCCAAAGGC ATA GCCTCGAAGCGCCA GACTGATGCGATCTG TERM 3640 3323681 - 3323653 - H 70 -10.9 -2.70498 | overlap 3323652 CAGATGGTATACAAC GGCGCCCAAAGGC ATA GCCTCGAAGCGCC AGACTGATGCGATCT TERM 3641 3325063 - 3325051 - g 75 -10.5 -3.72576 | CGGCTGCGGATGAAA GCGGC AAG GCCGC GGCGGATTCAGAACT Avi_3949 3323754 - 3325700 + | hypothetical protein TERM 3642 3325693 - 3325676 - T 90 -7.7 -4.83615 | opp_overlap 3325663, overlap 3325678 CAGTGCCGAGAAAAA TCGGCAG CTTG CTGCCAA CAATTGAAAACCCAA TERM 3643 3325745 - 3325726 - T 100 -15 -3.72968 | ACGATGATATGGAAA TGGCGGCC AGAA GGCCGCCA TCAAAGCGTTATGAA TERM 3644 3325794 - 3325765 - T 70 -6.3 -4.2461 | AGCGTTATGAAGAAA GGGGCTGCCTGAT CGTA ATCAGGCTGCGAC CTGATCCATCGGCTT clpB 3328389 - 3325783 - | ATP-dependent Clp protease ATP-binding subunit TERM 3645 3325878 - 3325912 + g 74 -11.4 -3.5511 | opp_overlap 3325872 3325887, overlap 3325875 CGTCAAGCACTTCGC CTGACAGGATCTGCTC GGC GAGCGGGTCCTGCAAG TATTTCTGGATCACC TERM 3646 3328650 - 3328623 - R 100 -9.1 -6.04324 | opp_overlap 3328621 3328623 TCAAAAAATAAAAAA GCCCCTGCTCC AGAAAA GGAAAAGGGGC TGATTTTGGTCATCA Avi_3953 3329604 - 3328720 - | hypothetical protein hemK 3330912 - 3330031 - | protoporphyrinogen oxidase TERM 3647 3330521 - 3330498 - G 85 -11.6 -4.09243 | GACATTCCTGCAAAA GCGCCAGGGC AATT GCCCCGGTGC CCGTCCCCATATCCA prfA 3331988 - 3330909 - | peptide chain release factor 1 TERM 3648 3331636 - 3331657 + g 83 -4.4 -5.14563 | GACCCACCCGTTCCA GCGCGA ATTTCCAGGA TCGCGC TTTTTTCGTCGGCGG ptsI 3334280 - 3332016 - | phosphoenolpyruvate-protein phosphotransferase TERM 3649 3332678 - 3332694 + g 75 -3.6 -4.73613 | opp_overlap 3332645, overlap 3332679 3332685 ACAGCCGGATGGCGC GCCAGC CGAGA GCTGGG TTTTCTTCCTCATGG TERM 3650 3334329 - 3334307 - R 100 -15.6 -3.56325 | TCCCGATAATGACAA TCCAGGCGCA AAA TGCGCCCGGA GGTAGTGATCAAGGG lysC 3335640 - 3334366 - | aspartate kinase alpha and beta subunit TERM 3651 3336003 - 3335965 - H 95 -10.4 -4.65838 | opp_overlap 3335964 3335975, overlap 3335969 GAGATATTCGAAAAA GGAATACCAACTGCCATT TTT AATGGCAGTTGGTATAAG ATTTACCGCATATTT TERM 3652 3335999 - 3335969 - H 100 -20 -3.81926 | opp_overlap 3335964 3335975, overlap 3335965 TATTCGAAAAAGGAA TACCAACTGCCATT TTT AATGGCAGTTGGTA TAAGATTTACCGCAT TERM 3653 3335975 - 3335993 + H 80 -11.8 -3.28708 | opp_overlap 3335969 3335965, overlap 3335964 AAAAAGGAATACCAA CTGCCATT TTT AATGGCAG TTGGTATAAGATTTA TERM 3654 3336119 - 3336092 - H 81 -7 -4.60797 | gap 1, overlap 3336094 GCGCTACATATAAAA TGCC-GCCGCG TACCGGT CGCGGCAGACA AAAGCAGTCAATGAA TERM 3655 3336893 - 3336914 + G 91 -8 -5.08169 | gap 1, opp_overlap 3336893, overlap 3336883 GCTCTTGCCGGAACA GGCC-GCCA TTTCC TGGCCGGCC TTTTTTGCGATCTAT TERM 3656 3337155 - 3337138 - g 100 -14.1 -4.15565 | GTCATTATTCCAAAA CCCCGGC ACTG GCCGGGG TCGGACGCACCGCAG lpiA 3336147 - 3338759 + | Protein regulated by acid pH TERM 3657 3339976 - 3339960 - g 73 -3.5 -4.72272 | overlap 3339961 3339963 3339964 GGCTGGGAGCAAAAA GCAGCGG CGC CGGCGGC GATCCCACCAAGGAA acvB 3338756 - 3340183 + | virulance and acid tolerance protein TERM 3658 3340203 - 3340193 - T 72 -6.8 -4.15066 | overlap 3340188 3340195 GATTGATAAAGCAAA GAGC GTT GCTC ACGCCCTGCTCGACC TERM 3659 3340289 - 3340271 - T 100 -16 -5.16237 | opp_overlap 3340271 AACCGCATGAAAAAA GGGCCGCT TAA AGCGGCCC TTTCCAATATCTGTA TERM 3660 3340271 - 3340289 + T 100 -16 -3.66139 | opp_overlap 3340271 AACCGCATGAAAAAA GGGCCGCT TAA AGCGGCCC TTTCCAATATCTGTA Avi_3964 3341186 - 3340323 - | hypothetical protein TERM 3661 3340833 - 3340822 - G 75 -5.8 -4.56597 | CGTTCGCGGTAAAAA TCGC GGCC GCGA TAATAGCGATCCCAA ubiG 3341526 - 3342308 + | ubiquinone biosynthesis O-methyltransferase Avi_3966 3342896 - 3342315 - | hypothetical protein Avi_3967 3343327 - 3342899 - | hypothetical protein Avi_3968 3344181 - 3343324 - | amidohydrolase TERM 3662 3344086 - 3344125 + g 72 -8.6 -3.79906 | gap 1 ATAGATCGCCCCTGC TGCTGCTGCC-TCGCGC ACCAGAC GCGCCATGGTAGCGGCA TTCTTCTCAAGATCG grxC 3344445 - 3344191 - | glutaredoxin 3 comF 3345207 - 3344497 - | competence protein F TERM 3663 3346245 - 3346259 + G 73 -3.4 -4.72272 | opp_overlap 3346245, overlap 3346223 GCCCGCAGCCGCAAA CCGCTG ACC CGGCAG TTTTTCCTGCGCGCC Avi_3971 3345570 - 3346439 + | methyltransferase TERM 3664 3346500 - 3346452 - T 87 -13.9 -3.09834 | gap 1 TAGGGGATCATTCAA GCCTTTGCCGCAAGCCTGAACG CATTGC CGGTCAGGCTTGCGGTAT-GGC GGCAATGATGGAATC pilA 3346671 - 3346483 - | fimbriae associated protein TERM 3665 3346704 - 3346687 - R 91 -11.3 -4.13945 | ACCCCTAGCCTAAAA CCATGCG CCCC CGCATGG GTGATCGAAGCGAAC Avi_3974 3347124 - 3346804 - | hypothetical protein TERM 3666 3347207 - 3347238 + r 76 -7.4 -4.25283 | opp_overlap 3347207 3347228 CGACCACATAGATCA GGAGGTTTGCAT CATTGAAC ATGCAAAACTCC TTTTGCTCACCCCAT Avi_3976 3348040 - 3347633 - | NTP pyrophosphohydrolase MutT family Avi_3977 3348840 - 3348037 - | acetyltransferase argJ 3350081 - 3348840 - | arginine biosynthesis bifunctional protein TERM 3667 3350161 - 3350119 - R 91 -9 -4.63172 | opp_overlap 3350159, overlap 3350124 GACGAAACGACAAAA GGAAACCGCCGCATCGCG TCCTATG CGCGATGCGGCGGAATGA GCGCTTGCTTATGGC TERM 3668 3350156 - 3350124 - R 100 -22.1 -4.29391 | overlap 3350119 AACGACAAAAGGAAA CCGCCGCATCGCG TCCTATG CGCGATGCGGCGG AATGAGCGCTTGCTT ppiD 3351045 - 3350170 - | peptidyl-prolyl cis-trans isomerase TERM 3669 3350510 - 3350535 + g 75 -3.9 -4.8622 | gap 1, overlap 3350511 AAACCGAGATCACCG CCGTCCGA-TCC GCT GGAATCGGTCGA TTTTTCCTTGGCAAG TERM 3670 3350775 - 3350795 + g 87 -7.5 -5.02074 | AAGCCATGCGCTGCT TGTAGGCCG GAT CGTCCTGCA TTTTTTCGCCGATGG TERM 3671 3352391 - 3352381 - g 71 -6.8 -4.11692 | GATCCAGCCGGAAAA CCAG ACG CTGG CCTCGATTACCTTCC secA 3351308 - 3354007 + | preprotein translocase SECA subunit TERM 3672 3354043 - 3354019 - f 100 -11.4 -4.56314 | opp_overlap 3354019 3354039 GTAAGACAATCAAAA TCGGCCAGCC GGATG GGTTGGCCGA TTTCTCACAGGCATA TERM 3673 3354019 - 3354043 + F 100 -13.6 -3.86015 | opp_overlap 3354019, overlap 3354039 GTAAGACAATCAAAA TCGGCCAGCC GGATG GGTTGGCCGA TTTCTCACAGGCATA TERM 3674 3355473 - 3355505 + G 71 -8.3 -4.05026 | opp_overlap 3355477, overlap 3355478 GAAGCGATCTTGTTA CACATTGCCGTGCGC TAT GCGCTTGGCATTGTC TTATTTGCATTTGCC TERM 3675 3355478 - 3355500 + G 81 -11.2 -3.91066 | opp_overlap 3355477, overlap 3355473 GATCTTGTTACACAT TGCCGTGCGC TAT GCGCTTGGCA TTGTCTTATTTGCAT Avi_3983 3354156 - 3355559 + | polysaccharide biosynthesis associated protein Avi_3984 3355580 - 3356863 + | hypothetical protein Avi_3985 3358532 - 3356877 - | AMP-(fatty) acid ligase protein TERM 3676 3357394 - 3357407 + g 71 -8.1 -3.98214 | CCGACCTTGCCGACT GGCAG CTCC CTGCC TTTGTCATCGATAAT TERM 3677 3358599 - 3358617 + H 93 -8.8 -4.85599 | overlap 3358616 ATTCAGAGAGTTTGC CGCAGATC CAG GATCAGCG TTTTTGTCAAATAGA TERM 3678 3359104 - 3359078 - H 70 -7.3 -4.07568 | gap 1 TTTCCTGGTTTAAAA GCTCACGCACTT CAAA ACGTGCG-GAGC ATAAAAGGAGGATAC TERM 3679 3359354 - 3359397 + H 70 -10.4 -3.18383 | gap 1, opp_overlap 3359357 3359361 3359365, overlap 3359342 3359359 GATTCTGTCTTGATA CAAGGTAGATATTGCCCGTTC AAT GAGCGGGCAATATCC-CTGTG TTGGTGAATGGCCAT TERM 3680 3359393 - 3359357 - H 71 -9.6 -3.48276 | gap 2, opp_overlap 3359342 3359354 3359359, overlap 3359361 3359365 TCTGTCTTGATACAA GGTAGATATTGCCCGTTC AAT GAGCGGGCAATATC--CC TGTGTTGGTGAATGG TERM 3681 3359359 - 3359393 + H 81 -12.2 -3.13867 | opp_overlap 3359357 3359361 3359365, overlap 3359342 3359354 TGTCTTGATACAAGG TAGATATTGCCCGTTC AAT GAGCGGGCAATATCCC TGTGTTGGTGAATGG TERM 3682 3359391 - 3359361 - H 100 -17 -2.63079 | opp_overlap 3359342 3359359 3359354, overlap 3359357 3359365 TCTTGATACAAGGTA GATATTGCCCGTTC AAT GAGCGGGCAATATC CCTGTGTTGGTGAAT TERM 3683 3359387 - 3359365 - H 75 -12 -2.97425 | opp_overlap 3359359 3359354, overlap 3359361 3359357 GATACAAGGTAGATA TTGCCCGTTC AAT GAGCGGGCAA TATCCCTGTGTTGGT pleD 3359601 - 3360491 + | two component response regulator Avi_3989 3361361 - 3360864 - | IS3 family transposase kka 3362857 - 3361958 - | aminoglycoside phosphotransferase TERM 3684 3362930 - 3362940 + r 72 -5.4 -4.58395 | AAATGAGATCGTCTC CAGT CTG ACTG TTTTTCGAGCGTAAA TERM 3685 3363365 - 3363375 + r 79 -2.4 -5.26918 | GGTACTTCAGCGCGT CGAC GAT GGCG TTTTTTGTCACCTAT Avi_3992 3364939 - 3363572 - | hypothetical protein TERM 3686 3363747 - 3363712 - G 79 -6.8 -4.58663 | overlap 3363739 ACGATTCGCCAAAAA TGAGCTGCCCGGTTGC CTTC ACAACGAGACCGCTCA GGAGGTCGCTAATCA TERM 3687 3365399 - 3365446 + r 87 -13.6 -3.00525 | opp_overlap 3365431, overlap 3365396 CGTCTCTTGCCGTCG TTGATCCCGTTACCCTTGTTTG CGAT CAAACAGGGGAAAGCGGATCAA TCTGATTTACCCCCA Avi_3993 3366550 - 3365453 - | oxidoreductase Avi_3994 3366660 - 3367553 + | transcriptional regulator LysR family Avi_3996 3368285 - 3368764 + | transcriptional regulator protein Avi_3998 3369474 - 3370064 + | hypothetical protein Avi_4000 3370088 - 3370600 + | hypothetical protein Avi_4001 3371154 - 3370597 - | hypothetical protein TERM 3688 3370663 - 3370631 - G 75 -10.6 -3.68962 | TCCCAATAGAGATAA TCCACCCAGCTTTC ATGCA GATAGTTGGGTGGA AACGACCGGCCATTA alkA 3371906 - 3371253 - | DNA-3-methyladenine glycosidase II TERM 3689 3371657 - 3371639 - G 75 -10.2 -3.68908 | overlap 3371630 3371627 AAAGACCGAGCGAAA GCGCTGCG TCA CCCAGCGC CAAATAGGCGGCGGG gltX 3371945 - 3372847 + | glutamyl-tRNA Synthetase Avi_4005 3373702 - 3372806 - | ribonuclease transmembrane protein Avi_4006 3373813 - 3374646 + | short chain dehydrogenase Avi_4007 3374683 - 3374880 + | hypothetical protein TERM 3690 3374953 - 3374908 - f 79 -12.7 -3.02144 | opp_overlap 3374921, overlap 3374921 CCACTTTTCCTAACA GTCTGTCCAAAAATTGCCGCT GGCC AGCAGCAATTCTTGAGCAGGC TGTCAGGCAAACTCT TERM 3691 3374940 - 3374921 - f 85 -8.6 -4.57073 | opp_overlap 3374921, overlap 3374908 CAGTCTGTCCAAAAA TTGCCGCT GGCC AGCAGCAA TTCTTGAGCAGGCTG TERM 3692 3374975 - 3374989 + F 90 -11.4 -3.85817 | opp_overlap 3374974 3374975 GCAAACTCTCATAAT GCGGGT ACC ACCCGC TTTCTCAAGACGAAT TERM 3693 3374989 - 3374975 - f 73 -11.4 -2.60714 | opp_overlap 3374975, overlap 3374974 GCAAACTCTCATAAT GCGGGT ACC ACCCGC TTTCTCAAGACGAAT TERM 3694 3375526 - 3375560 + G 72 -5.6 -4.431 | opp_overlap 3375546, overlap 3375529 TTTCCTGTTCGTCGC CGCCCGCTATGCCAAT GAG ATTGGCAAGGCCGATG TTTTGTGGGTGCCTG Avi_4008 3375011 - 3375589 + | hypothetical protein etfB 3375990 - 3376739 + | electron transfer flavoprotein beta subunit etfA 3376764 - 3377693 + | electron transfer flavoprotein alpha subunit TERM 3695 3377700 - 3377684 - T 70 -6.5 -4.19238 | opp_overlap 3377684 GCCGGAATTTGAAAA GGCGC TTTGATC GCGCC TTGATCAACGAAATT TERM 3696 3377751 - 3377724 - T 77 -12.8 -2.74196 | opp_overlap 3377729, overlap 3377729 CGAAATTTAGACAAG GAAAAGGCCGCA GACA TGCGGCCTTTTT GCTTTTCAGGGATTA TERM 3697 3377746 - 3377729 - T 100 -12.7 -4.53034 | opp_overlap 3377729, overlap 3377724 TTTAGACAAGGAAAA GGCCGCA GACA TGCGGCC TTTTTGCTTTTCAGG TERM 3698 3377729 - 3377746 + T 100 -12.7 -5.0925 | opp_overlap 3377724 3377729 TTTAGACAAGGAAAA GGCCGCA GACA TGCGGCC TTTTTGCTTTTCAGG mcpG 3380056 - 3377786 - | methyl-accepting chemotaxis protein TERM 3699 3380279 - 3380265 - H 85 -11.4 -3.6682 | GTGCATCGATCCAAA CGGCTG CCT CAGCCG GGCTTGAACAATCGA TERM 3700 3380571 - 3380617 + H 74 -10.1 -3.55622 | gap 2, opp_overlap 3380579 CTTTATCACTGTCGG CCAGGACACGC-CGGAG-GAGCC ATA GGCACACTCTGCGCGCGTCATGG TTTGCAAGGCTTAAG hbdA 3380694 - 3381566 + | 3-hydroxybutyryl-CoA dehydrogenase TERM 3701 3381584 - 3381614 + T 100 -21.4 -3.12351 | opp_overlap 3381592 GTTCTGGCTGGGTCA TGCGAAGAGCCATT GAG AATGGCTCTTCGCA TTCCCTATGAAAAAA dsbE 3382433 - 3381771 - | thiol:disulfide interchange protein argH 3382458 - 3383861 + | argininosuccinate lyase Avi_4018 3383956 - 3384147 + | hypothetical protein lysA 3384158 - 3385429 + | diaminopimelate decarboxylase TERM 3702 3385654 - 3385641 - g 75 -3.8 -4.72272 | TTCCGGCACGAAAAA GAGC CAAGTT GCTC TAAACGGCGATCAAA TERM 3703 3385782 - 3385797 + G 76 -3.2 -5.00616 | gap 1 CGCCATTTTCCTGTC GCTG-GC CTG GCTCGGC TTTTTTCGCGAGGCA Avi_4021 3385594 - 3388338 + | hypothetical protein Avi_4023 3388805 - 3388446 - | two component response regulator TERM 3704 3388693 - 3388666 - G 70 -12.2 -2.84634 | gap 1, opp_overlap 3388673, overlap 3388672 TCCGACAGCAGCAGA TCGAAATTGCTGG TAG CCAGC-ATTTCGA GACCCTCGGCGCCGT TERM 3705 3388673 - 3388687 + g 71 -10 -3.53811 | opp_overlap 3388672 3388666 GCAGCAGATCGAAAT TGCTGG TAG CCAGCA TTTCGAGACCCTCGG hpt 3389686 - 3389138 - | hypoxanthine phosphoribosyltransferase Avi_4026 3390444 - 3389755 - | hypothetical protein ftsE 3390762 - 3391385 + | cell division ATP-binding protein ftsX 3391504 - 3392454 + | cell division protein Avi_4029 3392498 - 3393238 + | hypothetical protein plsC 3393210 - 3394121 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase Avi_4031 3394655 - 3394116 - | transporter TERM 3706 3395113 - 3395131 + G 75 -5.2 -4.56597 | GGATCCTCAGGCGCC TTCCGGTC ATC GGCCGAAA TTTTTCGGCCCGGCA Avi_4032 3394834 - 3395841 + | hypothetical protein tyrC 3396793 - 3395858 - | prephenate dehydrogenase hisC 3397887 - 3396793 - | histidinol-phosphate aminotransferase Avi_4035 3398732 - 3397971 - | hypothetical protein TERM 3707 3398131 - 3398114 - G 71 -8.3 -4.02817 | overlap 3398125 3398126 CCTCGACAACAATAA CGCCGGC AAAA GCCGGTG ACAGCATGCGACCGA gloB 3398836 - 3399606 + | glyoxalase II TERM 3708 3399807 - 3399819 + G 75 -10.5 -3.66654 | CATTATTATGCTGGC GCGCC GCT GGCGC TTTACCGTTCGAATG TERM 3709 3399961 - 3399977 + G 71 -7.9 -4.06055 | ACACACTGGTTGGCT GCACGGT CGC ACCGGGC TTTACTTTCGACGCT Avi_4037 3399606 - 3400037 + | hypothetical protein Avi_4038 3400142 - 3400708 + | cytochrome B561 protein Avi_4039 3401596 - 3400712 - | Premeases of the drub/metabolic transporter protein Avi_4040 3402413 - 3401622 - | hypothetical protein rpmB 3402637 - 3402927 + | 50S ribosomal protein L28 TERM 3710 3402961 - 3402986 + F 91 -11.2 -4.27316 | opp_overlap 3402955 TTGACATAACGAATG GGCTTGAACG GTAAAA CGTTCGAGCC TTTTCGCTTGGGCCG TERM 3711 3403119 - 3403109 - g 90 -3.2 -5.67063 | CCCAGGATAAAAAAA TGCG GAT CACA CGGCACATCTTCGTC TERM 3712 3403309 - 3403332 + G 75 -8.9 -3.96624 | TTCGGCCCGTCCACG GCCCGCAAA GTGGTG TTTGTGGGC TTTCTGGTGGGCGTG Avi_4043 3403108 - 3403740 + | hypothetical protein Avi_4044 3404771 - 3403752 - | hypothetical protein TERM 3713 3404632 - 3404644 + g 72 -4.9 -4.63527 | TGGTCCGAGGCCGGA TTGAA ATA TTCAA TTTTTCGGCTACTCA cobT 3406669 - 3404768 - | cobaltochelatase CobT subunit TERM 3714 3405902 - 3405926 + g 81 -8.5 -4.35461 | ATCGGCGGGCGCGCT TTCAGAGCCGG CTT CCTGCTCGGAA TTTTCCTGCTCTTCC TERM 3715 3406600 - 3406636 + g 77 -12.2 -3.60475 | gap 1, overlap 3406630 CGCAGCCGGTAATCG CCCGGCGCAACGGTTCG GTAT CGA-CCGCCGTGCCGGG TTTCGCCTGGGAATT cobS 3407679 - 3406687 - | cobaltochelatase CobS subunit dnaJ 3408440 - 3407769 - | molecular chaperone DnaJ family TERM 3716 3407855 - 3407867 + g 76 -3.4 -5.0133 | TGTCTCCGCCATTTG CATC TGGAT GATG TTTTTTGACAAGCTC bolA 3408515 - 3408811 + | stress induced morphogen aroB 3409959 - 3408814 - | 3-dehydroquinate synthase TERM 3717 3409381 - 3409333 - G 80 -2.2 -5.28481 | gap 1, opp_overlap 3409336 3409337, overlap 3409335 CAGCCAATCAAAAAA CTCCGGCT-TGTCGATCAGGCCA TATT TCGCCACTTCGGCATAGCCGGCG CGAAACTCTCTTTCG aroK 3410549 - 3409956 - | shikimate kinase Avi_4054 3410896 - 3411048 + | hypothetical signal peptide protein TERM 3718 3411423 - 3411408 - g 78 -6 -4.61231 | CGATACCCCGAAAAA GGGCCG GCCT CTGCCC AAGACCCTGTCGATT xerD 3411091 - 3412089 + | tyrosine recombinase XerD TERM 3719 3412669 - 3412648 - g 76 -4.4 -4.7254 | gap 1, overlap 3412663 ATCGGCCAGGAAAAA GGCAGCGAC ACCAA ATCGC-GCC TGAAGCACAATTTCG accA 3412294 - 3413250 + | acetyl-CoA carboxylase carboxyl transferase alpha subunit TERM 3720 3413327 - 3413368 + F 95 -14 -3.28712 | gap 1, overlap 3413328 AATGTTTCAATCGGG C-CTTATACCGACAGTCAT AACCA AAGACTGTCGGTATAAGTG TTGTGAACGACAAAA TERM 3721 3413328 - 3413366 + F 100 -17.7 -3.21276 | overlap 3413327 ATGTTTCAATCGGGC CTTATACCGACAGTCAT AACCA AAGACTGTCGGTATAAG TGTTGTGAACGACAA TERM 3722 3413968 - 3413919 - g 73 -12.7 -2.74334 | opp_overlap 3413920, overlap 3413918 3413914 CGAAAGAGAAGGAAG GCGACCGGCAGGCGCCGGAGGGT TTCT ACGCCCTGACGCCCGCCAATCTC AATCCCTATTCAAAA Avi_4058 3413603 - 3414940 + | hypothetical protein Avi_4059 3414916 - 3415188 + | hypothetical protein Avi_4060 3416400 - 3415213 - | hypothetical protein TERM 3723 3416533 - 3416507 - R 100 -7.2 -5.79595 | opp_overlap 3416525, overlap 3416508 3416524 3416525 TTCGAAAAGAAAAAA CGGACTGCCATT ATC AATGGCGCCCCG CATTACATTTGCGGG TERM 3724 3416531 - 3416508 - R 77 -8.2 -4.0613 | gap 1, opp_overlap 3416525, overlap 3416507 3416524 3416525 TCGAAAAGAAAAAAC GGACTGCCATT ATC AATGGC-GCCC CGCATTACATTTGCG dac 3417636 - 3416536 - | penicillin-binding protein Avi_4062 3417813 - 3418976 + | amidohydrolase TERM 3725 3419243 - 3419255 + F 70 -5.5 -4.35524 | TGCTGAAGTTATCAT GCTTC AGA GAGGC TTTTGGATTTCGGAG TERM 3726 3419394 - 3419421 + G 72 -6.2 -4.26475 | overlap 3419378 3419390 3419394 GGCCGCGCGCTGGCT GCTGCTGGCCGT CTTG ATGGCTAGCGCC TATTTTTTCTACGGT Avi_4064 3419362 - 3420411 + | permease agrR 3421251 - 3420496 - | transcriptional regulator LuxR family luxR 3422133 - 3421387 - | transcriptional regulator LuxR family TERM 3727 3422319 - 3422348 + r 72 -9.9 -3.39784 | opp_overlap 3422320, overlap 3422317 3422320 CCGCACCATACAAAA ATGCTGCGCCGAC TTTC GCTGGCGCAGCAC TGTTATTGCCCGTGA TERM 3728 3422320 - 3422347 + r 81 -13.4 -2.63549 | opp_overlap 3422320, overlap 3422319 3422317 CGCACCATACAAAAA TGCTGCGCCGAC TTTC GCTGGCGCAGCA CTGTTATTGCCCGTG TERM 3729 3422347 - 3422320 - R 100 -13.4 -5.00895 | opp_overlap 3422320 3422319 3422317 CGCACCATACAAAAA TGCTGCGCCGAC TTTC GCTGGCGCAGCA CTGTTATTGCCCGTG fliF 3424078 - 3422372 - | flagellar M-ring protein TERM 3730 3423974 - 3423941 - G 84 -3.7 -5.28176 | overlap 3423958 CTTATTGATAAAAAA CGCCGCACCGATAAC CAGC GCCACCGAAACGACG CCAACACCCGCAAGG TERM 3731 3424215 - 3424193 - R 73 -9.1 -3.67175 | overlap 3424189 3424179 ACGTCCCAAAACGAA GATCGCCCC GGAAA GGAGCGACC TGAACACTTTAGTAT Avi_4070 3424695 - 3424339 - | hypothetical protein cheD 3425558 - 3425004 - | chemotaxis protein cheY 3425944 - 3425555 - | chemotaxis receiver protein cheB 3426981 - 3425944 - | protein-glutamate methylesterase TERM 3732 3426061 - 3426073 + g 70 -4.8 -4.49389 | opp_overlap 3426061 GCGAGGCATACCATA GACC ACACA GGTC TTTTCGTTCTGCCCT cheR 3427886 - 3426978 - | chemotaxis methyltransferase cheW 3428350 - 3427883 - | chemotaxis protein cheA 3430343 - 3428355 - | Chemotaxis protein histidine kinase TERM 3733 3429009 - 3429042 + g 71 -11.1 -3.28791 | gap 1, overlap 3429013 3429020 CTCGTCGGACAGATT GGC-GTCGGCAGCGAT GAT ATCGTTGTCGATTGCC TTCTGGCGGACCCGT TERM 3734 3429013 - 3429037 + g 71 -11.5 -3.23274 | overlap 3429009 3429020 TCGGACAGATTGGCG TCGGCAGCGAT GAT ATCGTTGTCGA TTGCCTTCTGGCGGA cheY 3430988 - 3430623 - | chemotaxis receiver protein TERM 3735 3430687 - 3430713 + g 71 -7.8 -4.02817 | opp_overlap 3430671 GGCTTGACGATCCAG CCGGTAGCGCCA GCC TGGCGCGCACGG TTCTTCTTCTCAGCA Avi_4080 3431317 - 3430985 - | hypothetical protein TERM 3736 3431062 - 3431079 + g 78 -6.3 -4.57533 | overlap 3431051 3431048 TGAAAGCGTCTGACG CCTTCTT TATC GAGAAGG TTTTCTGGTCTTCTT Avi_4081 3433088 - 3431418 - | methyl-accepting chemotaxis protein TERM 3737 3431470 - 3431458 - G 78 -3.3 -5.14965 | ATCGGCACTAAAAAA TCGTG CCC CCCGA AGTCCTCGGAAAAAG TERM 3738 3431499 - 3431485 - G 87 -9.2 -4.57341 | opp_overlap 3431493, overlap 3431487 AAGTCCTCGGAAAAA GCCGCC ATC GGCAGC TCTGCCGTTTGCGCT TERM 3739 3432910 - 3432897 - G 77 -2.3 -5.03145 | opp_overlap 3432897 CAACTTGCGAAAAAA CGCGT GCAG ACCCG TTTCCACGTCAGTCT TERM 3740 3433215 - 3433234 + H 70 -10 -3.20858 | gap 1 TGGCATCATGCCGAG TGGGACGCG CAA CGCG-CCCA TTCCTCCGTGTCCTA TERM 3741 3433562 - 3433590 + H 77 -3.1 -5.04325 | opp_overlap 3433563 3433565, overlap 3433563 3433565 TTAACCCGCGCATGA AGAGCAGTCTTAC CTA GTAAAACTGCTGG TTTTTGTCGTTTCCA TERM 3742 3433587 - 3433565 - H 77 -11.4 -3.13522 | opp_overlap 3433565 3433563 3433562, overlap 3433563 ACCCGCGCATGAAGA GCAGTCTTAC CTA GTAAAACTGC TGGTTTTTGTCGTTT TERM 3743 3434810 - 3434820 + G 74 -6.8 -4.36914 | GCCGCCGAAGAATGT GCCT TTG AGGC TTTTGTCGAGGAAAA dxr 3433799 - 3434992 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Avi_4084 3436291 - 3435059 - | esterase (beta-lactamase family) TERM 3744 3435994 - 3436005 + g 70 -3.6 -4.56597 | opp_overlap 3435993 TGATGGCGGCAAACG TGCC GGCG GGCG TTTTTGGCCGGAACC TERM 3745 3436340 - 3436315 - R 100 -15.5 -5.07652 | TCCGCTAAAACAAAA TGCGGGCCATG TGAC CATGACCCGCA CAACCTGCGCAAGAG hemA 3437583 - 3436369 - | 5-aminolevulinate synthase TERM 3746 3437355 - 3437374 + g 73 -3.4 -4.7373 | opp_overlap 3437334 3437333 3437331 TGCCTCCAGCACCCG CGCCACAG TGAT CGATGGCG TTTTTCATCGCCTCG TERM 3747 3438356 - 3438337 - g 72 -6.3 -4.36595 | opp_overlap 3438352, overlap 3438338 CACGGAAACCGAAAA GGGCGCC GGCATT GGCGCCG CGTCGGGTGCCATCA Avi_4087 3438272 - 3438535 + | hypothetical protein TERM 3748 3438624 - 3438595 - f 76 -10.8 -3.31726 | opp_overlap 3438594 3438603, overlap 3438593 3438603 GGTGGCCATACAATA CCGGAAAAGTTC ACCGAG GAACTGTTCCGG CTATAATCGCAGATG TERM 3749 3439027 - 3439015 - g 71 -10.5 -3.58184 | opp_overlap 3439013 ACAGGAGAAGGACAA GCCGG TCT CCGGC GATCTTGGCGTGGTC Avi_4088 3438803 - 3440665 + | hypothetical protein TERM 3750 3444560 - 3444582 + G 78 -9 -4.17316 | CGCCCCCGCCCTGCC GCAGGACGAG GTC CTCGCCCAGC TTATTTTCGGCCAGT Avi_4089 3440709 - 3444923 + | hypothetical protein TERM 3751 3445394 - 3445408 + F 81 -10 -3.92373 | CTTGACGTCGCACGA GCCAAC ACA GTTGGC TTTATGCATAGGCTC TERM 3752 3446882 - 3446906 + G 71 -6.9 -4.17023 | overlap 3446898 CCGGAGTTGAAGCCG CCCGCGCGGGC GAG GCCGGCAAGGG TTTTGCCGTCGTTGC TERM 3753 3447216 - 3447203 - g 74 -8.1 -4.16016 | overlap 3447184 CCATGGTGGAAGAAA GCTCG GCGG CGAGC CATGGCCTTGCCCAA mcpA 3445543 - 3447321 + | methyl-accepting chemotaxis protein cheW 3447435 - 3447914 + | chemotaxis protein TERM 3754 3447939 - 3447956 + T 100 -10.5 -5.98675 | opp_overlap 3447934 3447939 ACGATAATATCAAAA GCGGCCT CATC GGGCCGC TTTTTTGTTTTTGTG TERM 3755 3447956 - 3447939 - T 93 -9.8 -4.47259 | opp_overlap 3447939, overlap 3447934 ACGATAATATCAAAA GCGGCC TCATCG GGCCGC TTTTTTGTTTTTGTG TERM 3756 3448033 - 3448006 - T 100 -21.4 -4.72272 | opp_overlap 3447999 GGCTCGGATCAAAAA TGCCGCCCTGCT TTTA AGCAGGGCGGCA TGACGAGATCGGTTA TERM 3757 3448070 - 3448055 - T 73 -9 -3.6502 | GATCGGTTAGCCAAA CAGCAC AAGC GTGCTG CGCAGAGTGACCCAA Avi_4093 3449704 - 3448046 - | MFS permease TERM 3758 3449358 - 3449340 - G 80 -4.4 -4.87803 | overlap 3449341 3449342 CAGGCCGAAACAAAA CCGGCACG ACG CGGGCCAA CCCGCTCCAGCCAAC TERM 3759 3449824 - 3449780 - R 100 -4.4 -5.63517 | TGCTCAAACAAAAAA CCAGCGC-ATGATGGCATGAAC AAA GTGAATG-CATCACGGCACTGG TTAGCTTGTCTATTC fdsD 3450257 - 3449985 - | NAD-dependent formate dehydrogenase delta subunit TERM 3760 3450210 - 3450230 + g 78 -6.1 -4.59109 | GAAGAATTGAGCGAT CTGGTTTGC CAT GCGGATCAG TTTTTCAGCAATATG fdhD 3451071 - 3450247 - | formate dehydrogenase family accessory protein FdhD fdhA 3453994 - 3451115 - | formate dehydrogenase, alpha subunit TERM 3761 3451471 - 3451499 + g 73 -10.9 -3.40403 | CATGCCAGACGGTGT TTTCGGTGCGCCG CGT CTGCGCGCCGACA TTATACTGCGACAGA TERM 3762 3451783 - 3451794 + g 72 -5.8 -4.43501 | TCCAGCCTAGCCCCA TGGC CTCA GCCA TTTTCTGGGTCACTT TERM 3763 3453252 - 3453277 + g 70 -3.9 -4.67755 | gap 1 GTCACCAGCGAATGC TCCGGC-TGGCC AAT GGCGATGACGGA TTTTTCCGTCAGTGT nuoF 3455556 - 3454000 - | NADH dehydrogenase I chain F nuoE 3456044 - 3455565 - | NADH dehydrogenase I chain E Avi_4101 3457072 - 3456137 - | transcriptional regulator LysR family TERM 3764 3456413 - 3456395 - G 76 -7.4 -4.50976 | opp_overlap 3456398 TCGGATATGAGAAAA CAACACGA TCA TCGAGTTG GATTCCAGTGTCGGT Avi_4102 3457422 - 3457150 - | transcriptional regulator ArsR family TERM 3765 3457436 - 3457452 + r 81 -10.1 -3.92641 | opp_overlap 3457436 3457434 AGGGCCTTCAGAAGA GCAGCGG CGC CTGCTGC TTTCTGCATGAAGTT mdh 3458527 - 3457595 - | malate dehydrogenase TERM 3766 3459318 - 3459302 - R 100 -10.8 -5.67063 | GTTATCACAAAAAAA GCGGCC ACGAG GGCCGC CTTGAAAACCGAAAA atpC 3459757 - 3459350 - | ATP synthase C chain TERM 3767 3459749 - 3459760 + g 77 -2.2 -5.04601 | TTCGAAATTGAAATT GTCA GCCA TGGC TTTTTACTTTCTAAC TERM 3768 3459786 - 3459812 + r 72 -10.9 -3.08133 | opp_overlap 3459785 3459784 3459789, overlap 3459789 CTAACGCTGGAAACT GAACGCACGAT CATAA ACCGTGCGTTC TTCGATCCATGGATC TERM 3769 3459809 - 3459789 - R 72 -9.7 -3.27704 | opp_overlap 3459789 3459786, overlap 3459785 3459784 ACGCTGGAAACTGAA CGCACGATC ATA AACCGTGCG TTCTTCGATCCATGG atpD 3461283 - 3459826 - | ATP synthase F1, beta subunit atpG 3462189 - 3461308 - | ATP synthase F1, gamma subunit TERM 3770 3462136 - 3462163 + g 78 -6.2 -4.652 | CGCTTTGGTAATTTT CTGCGTCGCCTT GACG GAGGCGATCCGG TTTTTCAGATCCTTT atpA 3463746 - 3462220 - | ATP synthase F1, alpha subunit atpH 3464327 - 3463746 - | ATP synthase F1, delta subunit TERM 3771 3464383 - 3464353 - R 70 -6.1 -4.19704 | gap 1, opp_overlap 3464369 GAATGTTACTCAAAA CTGTCGCATGCGCC GGCT GGCGCA-ACACCAG TTTGATATCGTTTAA Avi_4111 3464974 - 3464579 - | hypothetical protein priA 3467386 - 3465167 - | primosomal protein N' TERM 3772 3466096 - 3466082 - G 72 -8.6 -3.91897 | opp_overlap 3466081 3466078 CCGCCGATTGAGAAA CAACAG TGC CTGTTG CTGCTTTTCCACCGT TERM 3773 3466166 - 3466148 - G 72 -5.2 -4.45117 | overlap 3466137 3466149 3466150 GAGAGGCGAAAGAAA CCCGCC CCGTTCC GGCGGA TGGCGGCGCATGTCG TERM 3774 3466448 - 3466438 - G 90 -8.2 -4.89393 | overlap 3466440 CAAAGGGTAGAAAAA GCGC CGA GCGC GCACCGGCAACCACC TERM 3775 3466472 - 3466495 + g 83 -8 -4.58395 | opp_overlap 3466470, overlap 3466474 AACCACCCGAATATC GCCTGTCGCC GTTT GGCGCCAGAC TTTTTCCCGCGTCCG Avi_4113 3469822 - 3467486 - | methyl-accepting chemotaxis protein TERM 3776 3469933 - 3469910 - H 70 -6 -4.28375 | overlap 3469901 TTAATATATTCAAAA TATCCCCTCA ATAT CGAGGGCATA AAACCAAAGTATAGA TERM 3777 3470610 - 3470630 + G 91 -8.2 -5.02715 | overlap 3470611 ACGAGGAGCCTTGGA TCGCGGCG CGGGA CGCTGCGG TTTTTGCTTTGCTCT xerC 3470135 - 3471103 + | site-specific tyrosine recombinase XerC TERM 3778 3471909 - 3471893 - g 74 -7.9 -4.10657 | GCAGATTGCCGAAAA TGCCGCC AAG GCCGGCA AGCGGGTGGTCGGAT Avi_4115 3471198 - 3472313 + | hypothetical protein TERM 3779 3472350 - 3472324 - T 100 -21 -4.71401 | AATAAAATCAGAAAA GCCGTGGCTTGA ACA TCAAGCCACGGC CTCAAGATTGCAAAA TERM 3780 3472368 - 3472388 + T 72 -6.9 -4.17762 | opp_overlap 3472367 CAAGATTGCAAAACG GTGATAACT GCG AGTTCTCAC TTCTTTTAGAGCATC lpdA 3473869 - 3472463 - | dihydrolipoamide dehydrogenase rhtB 3474620 - 3473979 - | RhtB family transporter Avi_4119 3475073 - 3474654 - | hypothetical protein TERM 3781 3475049 - 3475039 - G 77 -2.4 -5.03715 | ATCAGCGGCAAAAAA GGCG AAG CGGC AAGAAAAGTCGGTTG sucB 3476413 - 3475181 - | dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex TERM 3782 3476489 - 3476454 - R 88 -12.4 -3.65351 | GGATTTCGAGCGAAA GGGTGGACCCGGCGGC ATCA GCCGCCGAGTGCGTCC TCCAGGAAGGCTTGC sucA 3479467 - 3476471 - | oxoglutarate dehydrogenase E1 component TERM 3783 3478806 - 3478819 + g 89 -6.7 -5.08088 | GGGCCTTCGATGCGC TCCTG AATC CAGGA TTTTTCTTCCGGATT TERM 3784 3479079 - 3479052 - G 71 -10.7 -3.53091 | gap 1, overlap 3479055 AGCTTGGCGTGCAAA TGA-CCGCGCAT GCGAT ATGCGCGGATCA TCATGATGGCGCGCA TERM 3785 3479075 - 3479055 - G 74 -12.6 -2.90496 | overlap 3479052 TTGGCGTGCAAATGA CCGCGCAT GCGAT ATGCGCGG ATCATCATGATGGCG TERM 3786 3479268 - 3479294 + g 70 -4.2 -4.63184 | overlap 3479269 AGCGGCCAATTGCTC CGCTGCCAGGAG GCT CCCTTGGCCGCC TTTTTCACATCGCTT TERM 3787 3479590 - 3479626 + r 79 -12.2 -3.07534 | opp_overlap 3479587 3479586, overlap 3479593 TGGACTTGAAATGCC TGCACGGGCAGACGCC ATAAA GACGTCTGCCCGCTCA TCTCTATGTGGTCTC TERM 3788 3479593 - 3479623 + r 77 -12.5 -2.74865 | opp_overlap 3479587 3479586, overlap 3479590 ACTTGAAATGCCTGC ACGGGCAGACGCC ATAAA GACGTCTGCCCGC TCATCTCTATGTGGT sucD 3480542 - 3479640 - | succinyl-CoA synthetase alpha chain Avi_4126 3480922 - 3480542 - | hypothetical protein sucC 3482123 - 3480927 - | succinyl-CoA synthetase beta chain TERM 3789 3482191 - 3482246 + r 72 -10.2 -3.33696 | opp_overlap 3482194 3482197, overlap 3482192 CTTAGAACTGCGTTA AAACCATGCGCGGCTGCGCCATCATC CGCA GATGAAGGCGCAGCCGCCAAAGGCGA TTACTTAAGAGCCGG TERM 3790 3482192 - 3482245 + r 84 -13.7 -2.60075 | opp_overlap 3482194 3482197, overlap 3482191 TTAGAACTGCGTTAA AACCATGCGCGGCTGCGCCATCATC CGCA GATGAAGGCGCAGCCGCCAAAGGCG ATTACTTAAGAGCCG TERM 3791 3482243 - 3482194 - R 100 -20.7 -4.10007 | opp_overlap 3482192 3482191, overlap 3482197 AGAACTGCGTTAAAA CCATGCGCGGCTGCGCCATCATC CGCA GATGAAGGCGCAGCCGCCAAAGG CGATTACTTAAGAGC TERM 3792 3482239 - 3482197 - R 100 -22.9 -3.08211 | gap 1, opp_overlap 3482192 3482191, overlap 3482194 ACTGCGTTAAAACCA TGCGCGGCTGCGCCATCATC CGCA GATGAAGGCGCAGCCGC-CA AAGGCGATTACTTAA mdh 3483209 - 3482247 - | malate dehydrogenase Avi_4130 3484552 - 3483389 - | hypothetical protein TERM 3793 3483745 - 3483711 - G 73 -12.9 -2.73635 | overlap 3483710 CAAAGCTCGGCAAAC GTGAAGCGCGCCATT TTTCC AACGGCTCGCCTCAC CGGCAAAAGCCTGCC TERM 3794 3484115 - 3484168 + g 74 -6.5 -4.53705 | gap 1, opp_overlap 3484112 3484117 3484119, overlap 3484117 TTCATCGAAGCACAA AAGCCCGGCTTC-AGCAGCCAGTTGC TCC GCAACCGGCGGCACGGGGTCGGCCTG TTTTGTCTCGCCATT TERM 3795 3484166 - 3484117 - G 76 -6.9 -4.55491 | gap 1, opp_overlap 3484115 3484117, overlap 3484112 3484119 CATCGAAGCACAAAA GCCCGGCTTCA-GCAGCCAGTTGC TCC GCAACCGGCGGCACGGGGTCGGCC TGTTTTGTCTCGCCA TERM 3796 3484117 - 3484166 + g 72 -9.1 -3.87627 | gap 1, opp_overlap 3484112 3484117 3484119, overlap 3484115 CATCGAAGCACAAAA GCCCGGCTTC-AGCAGCCAGTTGC TCC GCAACCGGCGGCACGGGGTCGGCC TGTTTTGTCTCGCCA TERM 3797 3484616 - 3484633 + r 77 -8.4 -4.09685 | opp_overlap 3484612 3484616 AGAAATCAGAATGAA GGGTGG CTCAGC CCACCC TTTTACCGGCTGAGG Avi_4132 3485148 - 3484636 - | hypothetical protein TERM 3798 3484856 - 3484899 + g 83 -13.3 -3.40371 | gap 1, opp_overlap 3484849 GTCAGGAACATGTCG CAGCTGGATTGGCCATTGGC CACAC GCCAATTGCCAA-CCATCTG TTCCTTGGTGAAATC TERM 3799 3485374 - 3485357 - R 75 -11.3 -2.88861 | overlap 3485344 TAGCACCGCCAGAGA CTGTCGC AACC GCGACAG CAGCCCGCCCGCGCC sdhB 3486318 - 3485539 - | succinate dehydrogenase iron-sulfur TERM 3800 3485869 - 3485885 + g 71 -7.9 -4.07687 | CTTCCATTCCTTAAC CGGCGTC GGA GACACCG TTTTCAGCCAGGGCT sdhA 3488190 - 3486334 - | succinate dehydrogenase flavoprotein subunit TERM 3801 3488072 - 3488048 - G 74 -11.3 -3.53224 | overlap 3488049 CAGGCGGTCTTGAAA CCCTGCTCGGC CAT GCCGAGCGTGG CGCGCAGGCCAGCGC sdhD 3488577 - 3488197 - | succinate dehydrogenase hydrophobic membrane anchor sdhC 3488982 - 3488590 - | succinate dehydrogenase cytochrome B-556 subunit Avi_4138 3489277 - 3489636 + | hypothetical protein Avi_4139 3490310 - 3489651 - | hypothetical protein Avi_4141 3490738 - 3490307 - | hypothetical protein Avi_4142 3491037 - 3490744 - | hypothetical protein gpsA 3492045 - 3491056 - | glycerol-3-phosphate dehydrogenase gcp 3493139 - 3492042 - | O-sialoglycoprotein endopeptidase TERM 3802 3492815 - 3492800 - G 84 -7.5 -4.8048 | GGTTGATAGCAAAAA GCGGC TTTCCC GCCGC CCGGGCAATCGCCTT TERM 3803 3493082 - 3493104 + g 70 -12 -2.78679 | opp_overlap 3493076, overlap 3493069 3493081 3493084 GGCGCAGAACGATAG CGGCTGCGGT TTC ATCGCAGCTG GTTTCGATGCCGAGA TERM 3804 3494122 - 3494133 + G 79 -7.2 -4.57569 | opp_overlap 3494122 3494121 3494116 AAGGTAAGAGACAAG GCCG GACC CGGC TTTTTCGAGGGATGG hemC 3493225 - 3494154 + | porphobilinogen deaminase Avi_4146 3494159 - 3494875 + | hypothetical protein Avi_4147 3494970 - 3496355 + | hypothetical protein TERM 3805 3496394 - 3496410 + G 70 -2.1 -4.77157 | TATATCCTGATCGTC CTGGCGC TTG GCTTCGG TTTTTCCTGGCTTGC Avi_4148 3496361 - 3497941 + | hypothetical protein TERM 3806 3498254 - 3498244 - g 71 -6.8 -4.25104 | CCGTCTTGATGAAAA CCAG AGG CTGG AACTGGTCAGCGTGC Avi_4149 3497951 - 3498460 + | hypothetical protein TERM 3807 3499110 - 3499141 + G 70 -4.4 -4.45485 | gap 1, overlap 3499112 GAAGGACGCATGCTG TTCGAT-GCCCCGCT CAA AGCCTGGCTATCGGA TTTTCTCGATCTGGT guaA 3498453 - 3499217 + | GMP synthase Avi_4151 3500456 - 3499224 - | MFS permease TERM 3808 3500652 - 3500663 + G 86 -5.8 -5.17353 | ATACCTGGATCCTGA TCGC CAGC GCGA TTTTTTCCTGGCTCT Avi_4152 3500594 - 3500884 + | hypothetical protein TERM 3809 3501158 - 3501131 - g 100 -17.8 -5.36441 | opp_overlap 3501131 CCGCCAGACAAAAAA TCCTCCGGATCG ATGG CGACCCGGAGGA TTTGATTGGTAGGCT TERM 3810 3501131 - 3501158 + G 100 -15.6 -3.95852 | opp_overlap 3501131 CCGCCAGACAAAAAA TCCTCCGGATCG ATGG CGACCCGGAGGA TTTGATTGGTAGGCT Avi_4153 3500881 - 3501195 + | hypothetical protein ppa 3501735 - 3501202 - | inorganic pyrophosphatase Avi_4155 3502376 - 3501870 - | acetyltransferase TERM 3811 3502585 - 3502566 - R 100 -16.4 -5.64274 | opp_overlap 3502566 CTATGCACAAAAAAA CCCCGGCC AACA GGCCGGGG TTGATGATCTCTCAG TERM 3812 3502566 - 3502585 + r 100 -16.4 -3.26545 | opp_overlap 3502566 CTATGCACAAAAAAA CCCCGGCC AACA GGCCGGGG TTGATGATCTCTCAG typA 3504489 - 3502624 - | GTP-binding tyrosin phosphorylated protein TERM 3813 3504226 - 3504200 - G 74 -13.1 -2.86728 | gap 1, opp_overlap 3504189 ACCATCGACAGGATA CGCTCGACTTCG CCGC CGAAGTCG-GCG TGGCCGGGGGTATCG TERM 3814 3504566 - 3504598 + r 74 -7.6 -4.07687 | opp_overlap 3504567 3504569 3504575, overlap 3504567 TTTTGCATTTGCGAA AGAGGCAAAGCGTC TTGAT GACGCTCTGCCGCA TTTTCACCGCAGAAT TERM 3815 3504597 - 3504567 - R 90 -13.3 -3.55444 | opp_overlap 3504567 3504566, overlap 3504569 3504575 TTTGCATTTGCGAAA GAGGCAAAGCGTC TTGAT GACGCTCTGCCGC ATTTTCACCGCAGAA TERM 3816 3504567 - 3504597 + r 72 -11.1 -3.04398 | opp_overlap 3504567 3504569 3504575, overlap 3504566 TTTGCATTTGCGAAA GAGGCAAAGCGTC TTGAT GACGCTCTGCCGC ATTTTCACCGCAGAA TERM 3817 3504595 - 3504569 - R 100 -14.5 -3.35597 | opp_overlap 3504567 3504566, overlap 3504567 3504575 TGCATTTGCGAAAGA GGCAAAGCGTC TTGAT GACGCTCTGCC GCATTTTCACCGCAG Avi_4157 3506193 - 3504613 - | secreted alkaline phosphatase protein TERM 3818 3505040 - 3505056 + g 78 -7.9 -4.44667 | overlap 3505033 3505042 CCATTATGGCCCTGG GCCACGG CTT CCGTGCC TTTCTTGTTGAGAAA TERM 3819 3506092 - 3506073 - G 80 -10.6 -4.07885 | CACCGTGGGTGAAAA CGGGGCGG TCCG CCGCCCGG GCATAAAACGGGAGC TERM 3820 3506241 - 3506214 - R 100 -13.5 -4.56597 | CTCTCCTTGGAAAAA CGACGCCGGTT GCATAG AACCGACGTCG GAGCCAAACAGAGAG dcp 3508407 - 3506323 - | peptidyl-dipeptidase TERM 3821 3507383 - 3507368 - G 73 -3.2 -4.82901 | TTCTCGGCATAAAAA CGCC AATCCCAG GGCG CAACCGCGTGATTCT Avi_4159 3508655 - 3509833 + | MFS permease TERM 3822 3509861 - 3509838 - T 100 -13.8 -5.45652 | opp_overlap 3509838 AGGTCCAATAAAAAA CCGCCGCCAG TCTC CCGGCGACGG TTTCAAATCTTTCAA TERM 3823 3509838 - 3509861 + T 73 -9.4 -3.695 | opp_overlap 3509838 AGGTCCAATAAAAAA CCGCCGCCAG TCTC CCGGCGACGG TTTCAAATCTTTCAA argG 3511109 - 3509880 - | argininosuccinate synthase TERM 3824 3511381 - 3511405 + H 77 -8.6 -4.08216 | opp_overlap 3511381 CGATAGAATTGGAAA GGTTCATGCT CTTCC AGCATGGGCC TTTTCCGAGCCATCA TERM 3825 3512083 - 3512069 - g 73 -3.4 -4.78237 | GAGCGGACAACAAAA CCTGAC GCG GCCTGG ACCCCGGAACAGACG Avi_4162 3511433 - 3512287 + | oxidoreductase TERM 3826 3512308 - 3512351 + F 84 -13.8 -2.64274 | overlap 3512302 CTTTATATGTTAAGC GTCAGGCTGTGACAGTTGGC TCTC GACATCTGCCACGGCCTGGC TAAATTTACGAGAAT TERM 3827 3512816 - 3512794 - g 71 -12 -2.93361 | opp_overlap 3512784, overlap 3512783 3512784 AAAACGGCAACGACA GCGCCTTTGA CGG TCAAGGGCGC AGCCGGATATGCCTT Avi_4163 3512425 - 3513240 + | hypothetical protein TERM 3828 3513265 - 3513295 + F 93 -8.2 -4.80882 | opp_overlap 3513264 3513265 3513268, overlap 3513268 CCGCTTGCTGAAAAG GGATCGCGGATCGT AAC ATGGCCCGCGATAC TTTTTCATATGCCAT rhtB 3513322 - 3513963 + | RhtB family transporter TERM 3829 3514052 - 3514039 - T 71 -3.1 -4.8083 | gap 1, overlap 3514040 GAAGAGCATGAAAAA GCC-GA TCA TCAGGC CACCGATGGGCATGA Avi_4167 3514319 - 3514095 - | Amino acid transporter protein Avi_4168 3515566 - 3514334 - | Fe-S-cluster redox protein TERM 3830 3515787 - 3515771 - R 100 -15.1 -4.87318 | opp_overlap 3515771 CCCAAAACGCAAAAA GGCCGGG AGA CCCGGCC TTCGTCGCATCATGA TERM 3831 3515771 - 3515787 + r 95 -15.1 -3.17212 | opp_overlap 3515771 CCCAAAACGCAAAAA GGCCGGG AGA CCCGGCC TTCGTCGCATCATGA Avi_4170 3516320 - 3515811 - | hypothetical protein TERM 3832 3516591 - 3516555 - R 74 -10.9 -3.20435 | opp_overlap 3516563 GGAATCAGGCAGGAA TTGGACTATGGCGCAAG AGA CTGGCGCCATAGTTGAA AATGTCGCAATCAGC TERM 3833 3516563 - 3516583 + r 70 -11.1 -2.72991 | opp_overlap 3516555 GCAGGAATTGGACTA TGGCGCAAG AGA CTGGCGCCA TAGTTGAAAATGTCG Avi_4172 3517042 - 3516602 - | hypothetical protein Avi_4174 3517412 - 3517110 - | 4a-hydroxytetrahydrobiopterin dehydratase Avi_4176 3518115 - 3517528 - | 2'-5' RNA ligase TERM 3834 3517698 - 3517672 - G 100 -12.3 -4.8622 | TCTTGGAACGAAAAA GGGCGCGGT CTGGAAATT ACCGCGCCC TGATAAATAATGAAC Avi_4178 3518949 - 3518182 - | esterase TERM 3835 3518644 - 3518661 + g 70 -4.1 -4.60041 | gap 1, overlap 3518646 GATACTGACATTCAT GCCCTTGT CAT GCA-GGGC TTTTTCCAGCTGGCT Avi_4180 3519126 - 3519761 + | ABC transporter nucleotide binding/ATPase protein TERM 3836 3519804 - 3519832 + G 78 -3.7 -4.91977 | opp_overlap 3519786, overlap 3519786 3519785 3519805 CCTTGCGTCTCAGCG CCCGCGAAATGCG CGG CGGGTTTGGCGGA TTTTATATTTTCCTG Avi_4181 3519758 - 3522304 + | hypothetical protein Avi_4182 3522493 - 3523263 + | hypothetical protein TERM 3837 3523292 - 3523311 + F 100 -12.8 -4.7254 | opp_overlap 3523290 AACAGGATAACATCG GGGCGGCC TTCG GGTCGCCC TTTTTCATGCGCCGT TERM 3838 3523382 - 3523360 - g 72 -8.5 -3.93782 | CTATGCAAGACGAAA TCTACACTG TTTCT CAGCGTAGA AAGTCCTATGCCCGT Avi_4184 3523318 - 3523947 + | acetyltransferase Avi_4185 3524374 - 3523955 - | hypothetical protein Avi_4186 3525493 - 3524705 - | hypothetical protein TERM 3839 3525842 - 3525875 + r 76 -8 -4.18762 | opp_overlap 3525847, overlap 3525844 3525847 AGCGAAGAGAAAACA AAAAAGCCGCCGGC ATTTGC GCCGGCGGCTGGTA TTTTCAATAGGAATT TERM 3840 3525844 - 3525873 + r 81 -10.6 -3.69216 | opp_overlap 3525847, overlap 3525842 3525847 CGAAGAGAAAACAAA AAAGCCGCCGGC ATTTGC GCCGGCGGCTGG TATTTTCAATAGGAA TERM 3841 3525847 - 3525870 + r 100 -16.7 -2.95081 | opp_overlap 3525847, overlap 3525844 3525842 AGAGAAAACAAAAAA GCCGCCGGC ATTTGC GCCGGCGGC TGGTATTTTCAATAG TERM 3842 3525870 - 3525847 - R 100 -17.4 -5.8901 | opp_overlap 3525847 3525844 3525842 AGAGAAAACAAAAAA GCCGCCGGCA TTTG CGCCGGCGGC TGGTATTTTCAATAG acnA 3528591 - 3525898 - | aconitate hydratase ccmA 3528843 - 3529508 + | heme ABC exporter, ATP-binding protein CcmA ccmB 3529505 - 3530164 + | heme exporter protein CcmB ccmC 3530233 - 3531015 + | ABC transporter membrane spanning protein (heme) Avi_4192 3531012 - 3531182 + | hypothetical protein TERM 3843 3531233 - 3531257 + G 79 -7 -4.63527 | GGGCTTTCCCGTTAC CTGCTGGCGG CCATT CCGCTTGCGG TTTTTGCGCTGATCG TERM 3844 3531750 - 3531739 - g 72 -5.8 -4.54047 | GCAGTCGATAGAAAA GGGT CTTT ACCC GGCTATCGATAGGGC ccmG 3531182 - 3531808 + | thiol:disulfide interchange protein Avi_4194 3532373 - 3531783 - | hypothetical protein TERM 3845 3531916 - 3531891 - G 75 -5.5 -4.67904 | gap 1, overlap 3531893 3531894 3531906 CAGCAACTCGAAAAA TACGGC-AACGA CAA TCGTTAGCCACA CCGGCACACGGGCTG ispZ 3533020 - 3532370 - | intracellular septation protein fstY 3534458 - 3533094 - | cell division particle TERM 3846 3534352 - 3534365 + g 75 -3.7 -4.72272 | TGTGGCTCGCTCTCG GCGGC AATG GCAGC TTTTTCCTCGGCGGA TERM 3847 3534414 - 3534434 + g 81 -3.9 -5.1675 | TGTTTCGCTTGGCTT GTCCTTGCC AAA GGTGAAGAC TTTTTTGATGAATCC Avi_4197 3535755 - 3534481 - | hypothetical protein dapF 3536663 - 3535752 - | diaminopimelate epimerase Avi_4200 3537730 - 3536735 - | hypothetical protein TERM 3848 3537017 - 3537032 + g 70 -11.8 -2.78547 | overlap 3537014 GAACCCTCCATATTT CCGGGC CGCA GCCCGG TAATTGATGCCATCG Avi_4202 3538441 - 3537791 - | hypothetical protein TERM 3849 3538574 - 3538604 + H 100 -11 -4.81851 | opp_overlap 3538577, overlap 3538575 AGTTCCCGGAGGTCA ACACCCGACAGCGC GAT GCGCCCTCGGGTGA TTTTTGGCTTTGCGT TERM 3850 3538575 - 3538603 + H 100 -14.5 -3.48026 | opp_overlap 3538577, overlap 3538574 GTTCCCGGAGGTCAA CACCCGACAGCGC GAT GCGCCCTCGGGTG ATTTTTGGCTTTGCG TERM 3851 3538601 - 3538577 - H 83 -13.5 -3.05844 | opp_overlap 3538575 3538574 TCCCGGAGGTCAACA CCCGACAGCGC GAT GCGCCCTCGGG TGATTTTTGGCTTTG TERM 3852 3539642 - 3539624 - g 71 -7.3 -4.11692 | overlap 3539612 TATTGACGCCGAAAA GGCCGCC GCCAT GGCCGCC AAGATGGCCAAGGGC ffh 3538680 - 3540260 + | signal recognition particle protein tyrA 3540273 - 3540605 + | chorismate mutase TERM 3853 3540613 - 3540596 - f 74 -10.5 -3.21063 | overlap 3540580 3540594 CAGTCAAACGGAACA GACCGCC TGAC GGCGGCC TCAACAACAGACCGG rpsP 3540670 - 3541041 + | 30S ribosomal protein S16 TERM 3854 3541058 - 3541097 + F 100 -17.2 -4.48713 | opp_overlap 3541056, overlap 3541059 CGGTTTGAAATGATT TGACCGACGGGCGGCATG GTTT CATGTCGCCCGTTTGTCG TTTATTCTTCCTCCG TERM 3855 3541059 - 3541096 + F 100 -18.5 -3.28505 | opp_overlap 3541056, overlap 3541058 GGTTTGAAATGATTT GACCGACGGGCGGCATG GTTT CATGTCGCCCGTTTGTC GTTTATTCTTCCTCC TERM 3856 3541592 - 3541571 - gf 70 -5.7 -4.4078 | opp_overlap 3541571 3541574, overlap 3541574 CTGCTGGAAGTAAAA GGACCGGGC AAGC GCCCCGTTC TTGTGCCATTTTCCG rimM 3541073 - 3541738 + | 16S rRNA processing protein RimM trmD 3541710 - 3542459 + | tRNA (guanine-N1)-methyltransferase Avi_4209 3543184 - 3542441 - | hypothetical protein rplS 3543459 - 3544001 + | 50S ribosomal protein L19 TERM 3857 3544026 - 3544043 + F 100 -10.5 -5.46657 | opp_overlap 3544026 AGTCTTTCTGAAAAA GGCGGTC TTCG GGCCGCC TTTTTTGTTGCCATC TERM 3858 3544043 - 3544026 - f 85 -8.3 -4.56775 | opp_overlap 3544026 AGTCTTTCTGAAAAA GGCGGTC TTCG GGCCGCC TTTTTTGTTGCCATC TERM 3859 3544125 - 3544103 - f 84 -10.5 -3.78778 | GCAGCACAGGAATAA CCCTGCGGC CACGC GACGCAGGG CCGTTGCCAGATAAT Avi_4212 3544225 - 3544629 + | hypothetical protein TERM 3860 3544909 - 3544923 + G 86 -5.6 -5.07652 | opp_overlap 3544899, overlap 3544910 GAAAAGCCGGTAGCA GCCTCG ACC CGAGGA TTTTATTTTGCCGCC TERM 3861 3545156 - 3545179 + G 74 -8.1 -4.14392 | CTCAATATATCGCGC CAGCCACAC CAGAAA GTGTGGCGG TTTTCCGGGTTAACC TERM 3862 3545610 - 3545596 - g 71 -10 -3.57144 | opp_overlap 3545596 TTCCCGATTGGCAAA TGGAGC GAT GCTCCA TTATCCGATGCGACC Avi_4213 3544867 - 3546279 + | integral membrane protein Avi_4214 3546344 - 3546721 + | Cu resistance protein TERM 3863 3546764 - 3546794 + G 82 -9 -4.55287 | gap 1, overlap 3546748 3546760 3546764 3546766 GCCTGGTGTTCGACG CC-TGCGCGCTCT TCCTCT GGGGCGCGCATGG TTTTCTGTGGCTCGC Avi_4216 3546718 - 3547596 + | Cu resistance protein TERM 3864 3548296 - 3548260 - g 87 -9.3 -4.59109 | overlap 3548261 TACAGGCCCTAAAAA CCGGCGATGTCGATCTG GTT CTGACCGACAGCACCGC TGGCAAAGGCTATGT TERM 3865 3548295 - 3548261 - g 79 -12.8 -3.34984 | overlap 3548260 ACAGGCCCTAAAAAC CGGCGATGTCGATCTG GTT CTGACCGACAGCACCG CTGGCAAAGGCTATG Avi_4217 3547701 - 3548498 + | ABC type amino acid transport system periplasmic component protein TERM 3866 3549210 - 3549223 + G 75 -5.9 -4.57837 | overlap 3549222 GAAAGATCTATGCCT CCGGG TCCT TCCGG TTTTTCGAGACCTAT Avi_4218 3548516 - 3549340 + | ABC transporter membrane spanning protein (amino acid) Avi_4222 3550480 - 3552264 + | glycosyltransferase TPR domain-containing protein TERM 3867 3552389 - 3552421 + F 90 -9.9 -4.41616 | opp_overlap 3552401 3552404 CGCGCCTGACATATT CGTGCTGCAAGAC CACAAGC GTCTTCCGGCACG TTTCTTTGCGCGCGT leuC 3552573 - 3553982 + | 3-isopropylmalate dehydratase large subunit TERM 3868 3554005 - 3554030 + T 100 -17.7 -4.22214 | opp_overlap 3554009, overlap 3554009 TCGAACTTTTGATCA GAAAGGCGGCT CTTG AGCCGCCTTTC TTGTTTTCACTCAAT TERM 3869 3554026 - 3554009 - T 93 -12.7 -3.96327 | opp_overlap 3554005 3554009 ACTTTTGATCAGAAA GGCGGCT CTTG AGCCGCC TTTCTTGTTTTCACT TERM 3870 3554009 - 3554026 + T 100 -12.7 -4.68601 | opp_overlap 3554009, overlap 3554005 ACTTTTGATCAGAAA GGCGGCT CTTG AGCCGCC TTTCTTGTTTTCACT yafB 3554889 - 3554059 - | oxidoreductase Avi_4226 3555604 - 3555044 - | hypothetical protein TERM 3871 3555105 - 3555079 - G 77 -10 -3.90744 | overlap 3555061 3555076 TGGCCTGTGAAACAA CCGCCAGCAGGC GGC GCATGTCGGCGG GGCTAATCGCCACGC TERM 3872 3556233 - 3556181 - g 86 -8.4 -4.6759 | gap 2, overlap 3556182 AAGATGGCAAGAAAA TCCGGCTGACGGAAAAGGAAGCGG CCATCAT CCGCTACCTCTACCG-C-GCCGGG CAAAAAGTCGTCACC TERM 3873 3556232 - 3556182 - g 76 -11.9 -3.39469 | gap 2, overlap 3556181 AGATGGCAAGAAAAT CCGGCTGACGGAAAAGGAAGCGG CCATCAT CCGCTACCTCTACCG-C-GCCGG GCAAAAAGTCGTCAC mtrA 3555724 - 3556407 + | two component response regulator Avi_4229 3556445 - 3556900 + | hypothetical protein Avi_4231 3558129 - 3557221 - | nucleotidyltransferase TERM 3874 3557436 - 3557454 + g 79 -5.2 -4.73635 | opp_overlap 3557436 GACGAGTATCCAAAC TTTCGGCC AGC GGTCGCAA TTTTCTTAAATTGTG TERM 3875 3557596 - 3557581 - G 76 -4.6 -4.8622 | GCGCTCAATCAAAAA TCCGGC TGCG GCCTGA AAGGCGTCGGCACTC xth 3558961 - 3558158 - | exodeoxyribonuclease III TERM 3876 3559065 - 3559040 - R 93 -11.9 -4.2349 | TTTTGACAGTGAAAA GGCCCGAAACC TCCA GATTTCGAGCC TCGATCCAGTAGAGA Avi_4235 3559758 - 3559096 - | possible lolA type protein Avi_4236 3562521 - 3559879 - | ftsK cell division protein TERM 3877 3562451 - 3562423 - G 72 -8.7 -3.8186 | overlap 3562429 CAGCCCAAGGAACAA GGCAAAGCCGAGC AGA GCAAGGCATTGCC GCATGATGAAACCCA TERM 3878 3562734 - 3562760 + r 82 -7.9 -4.46212 | opp_overlap 3562738, overlap 3562738 ATTTTCCAGAATCAA AAAACCCGGGC ACGAG GCCCGGGTTGG TTTTCTGATAACGAA TERM 3879 3562756 - 3562738 - R 100 -13.1 -5.32944 | opp_overlap 3562734 3562738 TCCAGAATCAAAAAA CCCGGGC ACGAG GCCCGGG TTGGTTTTCTGATAA TERM 3880 3562738 - 3562756 + r 100 -13.1 -3.77302 | opp_overlap 3562738, overlap 3562734 TCCAGAATCAAAAAA CCCGGGC ACGAG GCCCGGG TTGGTTTTCTGATAA amt 3564170 - 3562812 - | ammonium transporter glnK 3564549 - 3564199 - | nitrogen regulatory protein PII tesB 3565652 - 3564768 - | acyl-CoA thioesterase II Avi_4242 3565817 - 3566953 + | FAD-dependent monooxygenase Avi_4243 3567192 - 3567004 - | hypothetical protein lonD 3567900 - 3567226 - | ATP-dependent protease LA 2 trx 3569082 - 3568078 - | thioredoxin Avi_4247 3569770 - 3569261 - | hypothetical protein TERM 3881 3569810 - 3569843 + r 72 -6.1 -4.386 | opp_overlap 3569818 3569819 3569821 CTCAGTGGCATGCTG CGGTTAAACGATATC AAGC GATATCCTTCAACTG TTTTGTGCGCCATTC Avi_4248 3571632 - 3570337 - | MFS permease TERM 3882 3570974 - 3570987 + g 83 -8.1 -4.60041 | overlap 3570971 TCGGCATCCAGCCGG GCCTG AAGC CAGGC TTTTTCCGCGTCCGT TERM 3883 3571027 - 3571010 - G 74 -2.6 -5.00616 | overlap 3571012 GCGTCCGTCAAAAAA TGCGCC TTGGCT GGCGTA TCGGCGAGATAAAAC TERM 3884 3571277 - 3571265 - G 72 -5.5 -4.41616 | overlap 3571266 3571267 ACGCCCGGAAAGAAA CCTGC CTC GCAGA CACCCAGCAGAAAGC galM 3572794 - 3571733 - | aldose 1-epimerase TERM 3885 3571890 - 3571854 - G 80 -9.4 -4.12532 | gap 1, opp_overlap 3571887, overlap 3571887 GTTTCCAGACAGAAA CCGG-CATAAGCGCCGT AGCG ACGGCCCTCAAGACCGG AAACCGGTATATTCA Avi_4250 3574108 - 3572921 - | hypothetical protein TERM 3886 3573771 - 3573799 + g 76 -6.8 -4.4768 | gap 1, overlap 3573774 AGCGTTTCCATCAGC CTG-TCGAAACCA CCCA TGGCTTCGATCAG TTTCTTGTCTTCGTC Avi_4251 3574567 - 3574115 - | Histone acetyl transferase protein TERM 3887 3574523 - 3574487 - G 78 -9.4 -4.07568 | overlap 3574496 TTCCGTTTCGTAAAA GGCGAGATAGGCGC-GCC ACA GGCGGCGCCAGTCT-GCC TCGTCGTCAACAGTC metA 3575493 - 3574564 - | homoserine O-succinyltransferase TERM 3888 3575695 - 3575683 - R 81 -9.1 -4.02762 | TCAATGAAAACATAA GCTGC ACC GCAGC ACGGATCAGCGCCCG Avi_4254 3576567 - 3575701 - | ATPase protein TERM 3889 3576802 - 3576814 + H 100 -9.1 -5.4251 | opp_overlap 3576794 GACTGAACTGCAAGG CCGGA CGT TCCGG TTTTTTGTCTGTGCC TERM 3890 3577292 - 3577280 - g 86 -6.2 -4.98672 | overlap 3577282 CTCAAAAACACAAAA GGCC GGCGG GGCC TGGGCAACGCCAGTC Avi_4257 3577050 - 3577319 + | cold shock protein rpsU 3577355 - 3577603 + | 30S ribosomal protein S21 TERM 3891 3577674 - 3577644 - f 72 -6.2 -4.36914 | gap 1, opp_overlap 3577643 CCCTTGGCCATAAAA TCGAGACCAGGCA AATCCG TG-CAGGTCTCGA ATCCCTTGTTCCATG TERM 3892 3577759 - 3577721 - f 91 -11.7 -4.14511 | opp_overlap 3577728 3577756 3577757 AATCGGACTGGAAAA TGCCGCAGGCGTTCCGT TGATC ACGGAACGCCTTTTGCA TTTGGCCTCAGATGC TERM 3893 3577728 - 3577752 + F 100 -15.8 -4.35926 | opp_overlap 3577721 CTGGAAAATGCCGCA GGCGTTCCGT TGATC ACGGAACGCC TTTTGCATTTGGCCT Avi_4260 3577783 - 3578442 + | thiamine pyrophosphokinase Avi_4261 3578446 - 3580275 + | ABC transporter nucleotide binding/ATPase protein TERM 3894 3580319 - 3580357 + T 70 -6.8 -4.13728 | opp_overlap 3580329, overlap 3580323 AGATCGCTGTAGCGC TTTATACGAAGAGTCATT GAA GATGACTCTTCGTATTCC TTTTGCAAATATCTC TERM 3895 3580323 - 3580353 + T 100 -16.4 -3.67622 | opp_overlap 3580329, overlap 3580319 CGCTGTAGCGCTTTA TACGAAGAGTCATT GAA GATGACTCTTCGTA TTCCTTTTGCAAATA TERM 3896 3580527 - 3580584 + T 77 -6.3 -4.68919 | gap 1, opp_overlap 3580523 3580561, overlap 3580516 3580530 3580534 3580535 GCATCACTACAGCGC TGTGCG-CCCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGATTCTCTTG TTTTCGTTTGTCTTT TERM 3897 3580530 - 3580581 + T 100 -12.4 -4.40882 | gap 1, opp_overlap 3580523 3580561, overlap 3580516 3580527 3580534 3580535 TCACTACAGCGCTGT GCG-CCCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGATTCTC TTGTTTTCGTTTGTC TERM 3898 3580534 - 3580576 + T 100 -20.8 -3.97437 | opp_overlap 3580561, overlap 3580516 3580530 3580527 3580535 TACAGCGCTGTGCGC CCTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAGA TTCTCTTGTTTTCGT TERM 3899 3580535 - 3580575 + T 100 -24.3 -2.96836 | opp_overlap 3580561, overlap 3580516 3580534 3580530 3580527 ACAGCGCTGTGCGCC CTAGAGTCTGTCAGGTTCA GAT TGAACCAGACAGACTCTAG ATTCTCTTGTTTTCG Avi_4263 3581121 - 3580834 - | hypothetical protein TERM 3900 3581274 - 3581238 - R 100 -8.2 -6.06723 | gap 2 GCCTTGAAAAAAAAA CGACCATCCCAAGTGCCT TAA AGGC--TTGAGATAGTCG CAACGGAATACCGAC exsE 3583316 - 3581544 - | ABC transporter nucleotide binding/ATPase protein Avi_4265 3584215 - 3583550 - | hypothetical protein TERM 3901 3585056 - 3585071 + G 78 -6 -4.56597 | opp_overlap 3585056 AATCTCACCGAGGAA GCCAGG CAGA CCGGGC TTTTTGCGCCCCACG TERM 3902 3585400 - 3585424 + G 72 -6.3 -4.34402 | AGCCTATGGCCTGTT CACCAAGGGCG AAG TGCCGATGGTG TTTTCCTATACGACC thiB 3584780 - 3585781 + | ABC transporter substrate binding protein (thiamine) TERM 3903 3585839 - 3585850 + G 75 -3.6 -4.84529 | overlap 3585836 3585835 CTGGCGGGATCATCG GCCT TGCC GGGC TTTTTGCCTTTATCG TERM 3904 3585990 - 3586034 + G 93 -13.6 -3.86346 | gap 1 GACTTTGCTGTCCAT TACCTTTGCCCTGCCGGTGGC TCTG GCC-CTGGCGCGGCAAAGGCA TTTCTGGGGCCGTCG thiP 3585790 - 3587418 + | thiamine/thiamine pyrophosphate ABC transporter permease protein thiQ 3587415 - 3588164 + | thiamine ABC transporter ATP-binding protein Avi_4269 3588525 - 3590066 + | hypothetical protein TERM 3905 3590117 - 3590067 - T 100 -18.1 -3.61517 | gap 1, opp_overlap 3590067 3590068 3590078, overlap 3590068 3590071 ATCGTCTCGGAATAA CCTA-TGCATAATTCCTTAAATCG GAAT CGATTTAAGGAATTATGCAGCAGA TTTAAAGCGTTACAG TERM 3906 3590067 - 3590117 + T 100 -13.7 -3.57561 | gap 1, opp_overlap 3590067 3590068 3590071, overlap 3590068 3590078 ATCGTCTCGGAATAA CCT-ATGCATAATTCCTTAAATCG GAAT CGATTTAAGGAATTATGCAGCAGA TTTAAAGCGTTACAG TERM 3907 3590068 - 3590116 + T 100 -17.2 -2.74322 | gap 1, opp_overlap 3590067 3590068 3590071, overlap 3590067 3590078 TCGTCTCGGAATAAC CT-ATGCATAATTCCTTAAATCG GAAT CGATTTAAGGAATTATGCAGCAG ATTTAAAGCGTTACA TERM 3908 3590116 - 3590068 - T 100 -19.4 -2.76696 | gap 1, opp_overlap 3590068 3590067 3590078, overlap 3590067 3590071 TCGTCTCGGAATAAC CTA-TGCATAATTCCTTAAATCG GAAT CGATTTAAGGAATTATGCAGCAG ATTTAAAGCGTTACA TERM 3909 3590112 - 3590071 - T 100 -23.5 -2.6563 | opp_overlap 3590068 3590067 3590078, overlap 3590068 3590067 TCTCGGAATAACCTA TGCATAATTCCTTAAATCG GAAT CGATTTAAGGAATTATGCA GCAGATTTAAAGCGT TERM 3910 3590078 - 3590105 + T 100 -14.4 -3.2964 | opp_overlap 3590071 3590068 3590067, overlap 3590068 3590067 ATAACCTATGCATAA TTCCTTAAATCG GAAT CGATTTAAGGAA TTATGCAGCAGATTT TERM 3911 3590177 - 3590124 - T 100 -22.7 -3.727 | opp_overlap 3590124 3590125, overlap 3590125 TGCAGCAGATTTAAA GCGTTACAGCCTCCTTTGTGCGTTT TATA AAACGCACAAAGGAGGCTGTAGAGA TTTGGTTCGATCTAT TERM 3912 3590124 - 3590177 + T 100 -24.9 -3.95148 | opp_overlap 3590124 3590125, overlap 3590125 TGCAGCAGATTTAAA GCGTTACAGCCTCCTTTGTGCGTTT TATA AAACGCACAAAGGAGGCTGTAGAGA TTTGGTTCGATCTAT TERM 3913 3590125 - 3590176 + T 100 -28.4 -2.96366 | opp_overlap 3590124 3590125, overlap 3590124 GCAGCAGATTTAAAG CGTTACAGCCTCCTTTGTGCGTTT TATA AAACGCACAAAGGAGGCTGTAGAG ATTTGGTTCGATCTA TERM 3914 3590176 - 3590125 - T 100 -26.2 -2.83299 | opp_overlap 3590125 3590124, overlap 3590124 GCAGCAGATTTAAAG CGTTACAGCCTCCTTTGTGCGTTT TATA AAACGCACAAAGGAGGCTGTAGAG ATTTGGTTCGATCTA rpoH 3591059 - 3590202 - | alternative sigma factor RpoH TERM 3915 3591373 - 3591354 - H 77 -2.9 -5.05782 | gap 1, overlap 3591359 ACGCAGCGCAAAAAA GCGA-ATG TCGAT CATCTCGC CAACATCCCAGCTCT TERM 3916 3592678 - 3592660 - g 72 -4.4 -4.56775 | overlap 3592662 ACCTCCGTGGAAAAA CTGGCCCA GAA CGAGCCGG AAACCTACAAGACGC Avi_4272 3591544 - 3593475 + | chaperonine hsp90 protein TERM 3917 3593472 - 3593460 - T 88 -10.5 -4.07687 | ACGGCTGCTCGAAAA GGCGC TTC GCGCC TGATAAGTGCACAAT TERM 3918 3593522 - 3593495 - T 100 -19.2 -4.73677 | opp_overlap 3593495 TGCACAATAAACAAA GGCCCGGTTCGC ATCT GCAAACCGGGCC TTTTTTGATGAAGGA TERM 3919 3593495 - 3593522 + T 100 -17 -5.14563 | opp_overlap 3593495 TGCACAATAAACAAA GGCCCGGTTCGC ATCT GCAAACCGGGCC TTTTTTGATGAAGGA bfr 3594026 - 3593541 - | bacterioferritin TERM 3920 3594291 - 3594275 - R 100 -10.8 -5.04601 | CGCACAAACGAAAAA CCCCGC ACGAA GCGGGG TAGAAAAGGCAAGAG Avi_4276 3594814 - 3594473 - | hypothetical protein TERM 3921 3594726 - 3594744 + g 79 -7.4 -4.57482 | opp_overlap 3594726 TCCTGCTCAAGAAAT TCCGTGAT CGT GTCGCGGA TTTCTTTCTCGGTGA Avi_4277 3595388 - 3594906 - | hypothetical protein Avi_4278 3595965 - 3595552 - | hypothetical protein nadD 3596708 - 3596052 - | nicotinate-nucleotide adenylyltransferase TERM 3922 3596399 - 3596413 + gr 73 -11.4 -2.74192 | overlap 3596396 AGCTCGTCCCCAGCT CCGCCT CAA AGGCGG TGATCTTCAGGCGTG TERM 3923 3596696 - 3596718 + gr 77 -9.8 -3.65902 | overlap 3596698 CGTCAGGGCCGGATC TGCCCGGTGC CAT GCACCCGGTA TTTGAATGAGGTCAA TERM 3924 3596698 - 3596716 + gr 72 -10.2 -3.41073 | overlap 3596696 TCAGGGCCGGATCTG CCCGGTGC CAT GCACCCGG TATTTGAATGAGGTC proA 3597966 - 3596683 - | gamma-glutamyl phosphate reductase TERM 3925 3597967 - 3597977 + r 90 -4.6 -5.40464 | GACTGTGTCAAGCAT GGGC CTC GTCC TTTTTCTTTGTACTC proB 3599137 - 3597959 - | glutamate 5-kinase TERM 3926 3598879 - 3598902 + g 80 -9.4 -4.183 | opp_overlap 3598877 GCGCCAGAGCAATTT GCCCGACGGC TGCC GCCGCCTGGC TTTCTTCCAGCTTCA cgtA 3600234 - 3599134 - | GTP-binding protein TERM 3927 3599332 - 3599359 + g 74 -6.2 -4.42748 | CATCATTGGCTTCTT GCTGCAGGCCTT TTGC AGGGCCTTGAGC TTCTTTTTCAGCTCA TERM 3928 3600430 - 3600399 - g 78 -6.4 -4.60487 | CAGGATCGCCAAAAA CCTCGAGGGTGCCG ATGT CATCGCCCTCCAGG AAGTCACCCGCGGTT TERM 3929 3600709 - 3600666 - g 74 -8 -4.11484 | overlap 3600678 CCGAACCTTCGAAAA GCTCAACAATCAGCGCGCCG CCAC CGAAGCGGTGATCGATGCGC CCGGCGGGGCGCTCC Avi_4283 3600322 - 3601182 + | Metal-dependent exonuclease protein TERM 3930 3601181 - 3601217 + T 100 -18.1 -3.56594 | gap 1, overlap 3601171 3601184 GGGTGGAATTGGATT GA-GGGTGCGGCGGCC CTGTCC GGCCGCCGCACCTGTC TTTAAAACGCTTTCG TERM 3931 3601184 - 3601213 + T 100 -22.2 -3.24411 | overlap 3601181 3601171 TGGAATTGGATTGAG GGTGCGGCGGCC CTGTCC GGCCGCCGCACC TGTCTTTAAAACGCT TERM 3932 3601243 - 3601262 + T 77 -10 -3.57462 | gap 1, opp_overlap 3601243 TTTCGCTCTCTGAAA CCCGTCCTG CGT CAGG-CGGG TTTCAACATGCGGTG TERM 3933 3601262 - 3601243 - T 74 -10 -3.53012 | gap 1, opp_overlap 3601243 TTTCGCTCTCTGAAA CCCGTCCTG CGT CAGG-CGGG TTTCAACATGCGGTG Avi_4284 3601806 - 3601219 - | acetyltransferase Avi_4286 3602438 - 3601806 - | acetyltransferase TERM 3934 3602469 - 3602496 + r 100 -11.4 -4.99035 | gap 1, opp_overlap 3602469 GGAGGTAAGAAAAAA GGGAAGA-GAGGT GGC GCCTCATCTTCCC TTTTTGTCTGACTGA TERM 3935 3602496 - 3602469 - R 100 -10.7 -5.4833 | gap 1, opp_overlap 3602469 GGAGGTAAGAAAAAA GGGAAGA-GAGG TGGCG CCTCATCTTCCC TTTTTGTCTGACTGA TERM 3936 3602523 - 3602548 + r 74 -11.2 -3.14132 | gap 1, opp_overlap 3602540, overlap 3602541 CTGAACCTGTACGCT CAGCCGG-GTC GATGA GACGCCGGCTG TTGGTAAACGACCGG TERM 3937 3602541 - 3602564 + r 81 -8.8 -4.31835 | opp_overlap 3602540, overlap 3602523 CCGGGTCGATGAGAC GCCGGCTGTT GGTA AACGACCGGC TTTATTCTGCGGCTT TERM 3938 3602574 - 3602585 + r 70 -7.2 -4.11216 | overlap 3602572 ACCGGCTTTATTCTG CGGC TTCC GCCG TTTTCGGCATGACGG rpmA 3602838 - 3602566 - | 50S ribosomal protein L27 rplU 3603191 - 3602877 - | 50S ribosomal protein L21 TERM 3939 3603234 - 3603247 + r 73 -3.7 -4.87665 | opp_overlap 3603234, overlap 3603216 TTCTGACCGGCAAAT GCCGG ACGA CCGTC TTTTTGTCAGTCGGA rkpJ 3605084 - 3603780 - | capsular polysaccharide biosynthesis protein TERM 3940 3604012 - 3604033 + g 81 -10.9 -3.79747 | gap 1 TCAGGCAATTCGGGT GCCT-GCCAG AAG CTGGCGAGGC TTTGCTGGTGCGTGA TERM 3941 3604962 - 3604939 - G 80 -4.6 -4.94243 | overlap 3604940 CGAAAAAAATCAAAA GGCCATTTTC TCCA GAAAATGACA TCACCTGAACAAAAA TERM 3942 3605340 - 3605350 + G 70 -2.4 -4.73682 | CACCATGTGAATTTT ACGC TGG GCGA TTTTCTGTTCTGGCG Avi_4291 3605220 - 3606572 + | capsular polysaccharide biosynthesis protein TERM 3943 3606632 - 3606613 - T 70 -5.7 -4.35042 | opp_overlap 3606613, overlap 3606610 3606629 GCCATCATAAAACAA GGCCTTC ATAAAA AAAGGCC TTCATAAAAAAAGGG TERM 3944 3606686 - 3606629 - T 100 -7.8 -5.60993 | gap 1, opp_overlap 3606613 3606645, overlap 3606613 3606610 3606645 GCCTTCATAAAAAAA GGCCTTCATAAAAAAAGGGCGCGGAGT GAAAA ACTCCGCGCCCTTTTTG-ACGACTAAC AGCAATCAATGCCGG TERM 3945 3606671 - 3606645 - T 100 -19.5 -5.60993 | opp_overlap 3606645, overlap 3606629 GCCTTCATAAAAAAA GGGCGCGGAGT GAAAA ACTCCGCGCCC TTTTTGACGACTAAC TERM 3946 3606645 - 3606671 + T 100 -19.5 -4.58395 | opp_overlap 3606645 3606629 GCCTTCATAAAAAAA GGGCGCGGAGT GAAAA ACTCCGCGCCC TTTTTGACGACTAAC purH 3608251 - 3606692 - | bifunctional purine biosynthesis protein Avi_4294 3610017 - 3608461 - | hypothetical protein TERM 3947 3610072 - 3610043 - R 100 -12.1 -4.58395 | gap 1, opp_overlap 3610043, overlap 3610017 3610063 CGCAGCCGCGAAAAA GCAGCGCGCACCGG CAA CCAGC-CGCGCCGC TTCCATCGCCGCCAG TERM 3948 3610236 - 3610186 - R 81 -8.5 -4.36914 | gap 1, opp_overlap 3610187 3610189, overlap 3610187 3610189 3610190 CCTTGCGCGATAAAA CTATGAGGCTGATAAACCGAAATC GAAG GATGTCAGTTTATCAGCCGC-CAA TTGTGTAAAGATTTA TERM 3949 3610236 - 3610187 - R 70 -10.1 -3.21934 | opp_overlap 3610187 3610189, overlap 3610186 3610189 3610190 CTTGCGCGATAAAAC TATGAGGCTGATAAACCGAAATC GAAG GATGTCAGTTTATCAGCCGCCAA TTGTGTAAAGATTTA TERM 3950 3610235 - 3610189 - R 85 -13.3 -3.1733 | gap 1, opp_overlap 3610187 3610189, overlap 3610186 3610187 3610190 TGCGCGATAAAACTA TGA-GGCTGATAAACCGAAATC GAAG GATGTCAGTTTATCAGCCGCCA ATTGTGTAAAGATTT TERM 3951 3610233 - 3610190 - R 95 -16.2 -2.50077 | opp_overlap 3610189 3610187, overlap 3610189 3610186 3610187 GCGCGATAAAACTAT GAGGCTGATAAACCGAAATC GAAG GATGTCAGTTTATCAGCCGC CAATTGTGTAAAGAT sun 3611734 - 3610253 - | Sun protein TERM 3952 3610305 - 3610283 - G 72 -5.5 -4.42653 | overlap 3610270 ACGGCAGGCATAAAA GCCATCCAG CCCGC CCGCATGGC TATCGCCGCCCGGTA htpx 3612753 - 3611725 - | protease heat shock protein TERM 3953 3612654 - 3612628 - G 76 -7.3 -4.43012 | gap 1, overlap 3612630 3612631 ATTCCAATAGGAAAA CAGGTTCATCGC CCCA GCGATG-ACCAG CGCGATCATCATCCC TERM 3954 3612652 - 3612630 - G 72 -8.5 -3.81853 | gap 1, overlap 3612628 3612631 TCCAATAGGAAAACA GGTTCATCGC CCCA GCGATG-ACC AGCGCGATCATCATC Avi_4297 3612863 - 3613093 + | hypothetical protein Avi_4298 3613288 - 3613515 + | hypothetical protein TERM 3955 3613574 - 3613606 + F 100 -17.7 -4.20367 | GTGATTGTTCAAGCT GAGGCCCGCACGTGG ACA TCACGTGTGGGCCAC TTCTTTATTGAGAAG TERM 3956 3614258 - 3614233 - g 71 -6.8 -4.18506 | overlap 3614234 CGATGGCGAAAAGAA GCTGGCGGAC TATGGG GTCCGCCAAG ACGTCATCCATAAAT TERM 3957 3615056 - 3615094 + G 87 -15.5 -3.24747 | gap 1, opp_overlap 3615053, overlap 3615075 3615078 3615079 GGATATCACATAGTT TTGTCCGGCATGGACCGT GTCA ACG-TGCATGCCGGACAA TTCGTGCTGTCCGGC Avi_4299 3613799 - 3615274 + | hypothetical protein Avi_4300 3615264 - 3616598 + | carboxy-terminal protease TERM 3958 3616622 - 3616641 + F 100 -15 -4.8622 | opp_overlap 3616622 TGACGGTCCTCGAAA TGCCGGCC TCAT GGCCGGCA TTTTTCGTTGACAGC TERM 3959 3616641 - 3616622 - f 100 -15 -3.53444 | opp_overlap 3616622 TGACGGTCCTCGAAA TGCCGGCC TCAT GGCCGGCA TTTTTCGTTGACAGC Avi_4301 3616776 - 3617972 + | hypothetical protein ialA 3618012 - 3618539 + | invasion protein A parA 3619304 - 3618546 - | chromosome partitioning protein Avi_4304 3619550 - 3619909 + | hypothetical protein Avi_4305 3619906 - 3620478 + | hypothetical protein TERM 3960 3620540 - 3620563 + G 76 -3 -4.87786 | overlap 3620550 TGGCATTCGTTGCAA CGACGGGACT GATT GGTGCAGTCG TTTTTCTAACATTGG Avi_4307 3620512 - 3621219 + | hypothetical protein TERM 3961 3621382 - 3621367 - f 90 -11.8 -3.8709 | opp_overlap 3621367 AAACTCCTCTACAAA CGGCCG GTGT CGGCCG TTAAATGACACCCCT TERM 3962 3621367 - 3621382 + F 75 -11.8 -3.05463 | opp_overlap 3621367 AAACTCCTCTACAAA CGGCCG GTGT CGGCCG TTAAATGACACCCCT TERM 3963 3621425 - 3621391 - f 86 -13.7 -2.90496 | gap 1, opp_overlap 3621388 3621388 3621416, overlap 3621388 3621393 TCGGCCGTTAAATGA CACC-CCTCAGCCATA GGTT TGTGGCTGAGGCGGTG GGCCATGTTTATATG TERM 3964 3621422 - 3621393 - f 72 -10.7 -3.00525 | opp_overlap 3621388 3621388 3621416, overlap 3621391 3621388 GGCCGTTAAATGACA CCCCTCAGCCATA GGTT TGTGGCTGAGGCG GTGGGCCATGTTTAT TERM 3965 3621516 - 3621529 + F 71 -3.1 -4.87665 | overlap 3621505 TAAAGGTCGGGGCGG TCGTT TTGT AGCGA TTTTTCTAGCTCCCC TERM 3966 3621543 - 3621576 + F 90 -14.5 -2.64803 | overlap 3621539 GATTTTTCTAGCTCC CCGGCCACCAGAGGC TCAC GCCTCCGGTGGTCGA TCGGTTTCCAGGTGC Avi_4308 3621605 - 3622177 + | hypothetical protein cheB 3623646 - 3622552 - | protein-glutamate methylesterase TERM 3967 3623034 - 3623054 + g 87 -7.5 -5.00884 | GCTGCACGATGACGA TGCCTGGCG CGT TGGCAGGCA TTTTTTCCAGGAACT TERM 3968 3623145 - 3623178 + g 74 -6.7 -4.50627 | gap 1 TGGCCATGGCACGGC CTGACGGTGG-TGGCA GCA TGGCATCCGCAGTCAG TTTCTTTGCTGGCTC cheR 3624535 - 3623654 - | chemotaxis methyltransferase TERM 3969 3623770 - 3623792 + g 73 -3.2 -4.84359 | overlap 3623772 GGCAATCGCATAGGC GTCGCAGCAC ATT GAACTGCGTC TTTTTATCAAAATAA TERM 3970 3624375 - 3624344 - G 71 -10.1 -3.57561 | opp_overlap 3624331 GTCGAAGTCCGTAAA GCCGGTGGCGC GCAAGCGCCT GCGCAACCGGC CTTCCAGCATCGTCG cheW 3625026 - 3624532 - | chemotaxis protein Avi_4312 3626848 - 3625028 - | methyl-accepting chemotaxis protein TERM 3971 3625168 - 3625203 + g 74 -13.2 -2.94218 | opp_overlap 3625195 TTGCCGGTGCAGCCG TCCGGGCTGGCGCTGC GCGA GCAGCAACAGTCCGGG TCTGTGGTGCAGGCT Avi_4313 3628862 - 3626934 - | methyl-accepting chemotaxis protein TERM 3972 3627959 - 3627973 + g 74 -11.4 -3.54459 | CATTGGCAATCTTAT CGGCAG TAG CTGCCG TTTCACGCAGATTGA TERM 3973 3628127 - 3628149 + g 72 -9.2 -3.71792 | opp_overlap 3628133, overlap 3628124 TCCCGTTAATCGTCG TGACAAGATC CTT GATCTCGTCA TTGGTTTTCACTTCA Avi_4314 3630710 - 3629016 - | methyl-accepting chemotaxis protein cheW 3631246 - 3630719 - | chemotaxis protein cheA 3633300 - 3631243 - | Chemotaxis protein histidine kinase cheY 3633665 - 3633297 - | chemotaxis receiver protein TERM 3974 3633374 - 3633390 + g 76 -4.4 -4.8048 | gap 1 TCCAGCCGGTCGCAC CAGCGGC CTTG GCC-CTG TTTTTCATGTCGGCG Avi_4318 3633996 - 3633670 - | hypothetical protein Avi_4319 3635141 - 3633993 - | Metal dependent phosphohydrolase with a response regulator receiver protein Avi_4321 3636743 - 3635571 - | hypothetical protein TERM 3975 3636260 - 3636227 - G 70 -11.7 -2.73124 | gap 1, overlap 3636226 TGGCAGGCTTGAAAT CCGTGACTGCAACGCC GGT GCCGC-GCAGCCACGG CACCCAGGCGGCGTC Avi_4322 3640395 - 3636859 - | bifunctional: proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydogenase protein TERM 3976 3637509 - 3637485 - G 70 -12.1 -2.70932 | overlap 3637500 GCGGCTTTTCAACCA GGCGGCCCA GATAGAG CGGGCCGCC AGCCTTCGGCCCGGT TERM 3977 3637804 - 3637777 - G 71 -10.6 -3.60348 | gap 1 CTTAAGATCAGACAA TGCGCCGATC-TC GAT GATGGTCGGCGCA ACGAAGGTGCCGTGC TERM 3978 3639939 - 3639974 + g 71 -10.3 -3.55444 | opp_overlap 3639922 3639928 GAAAGCCCCTGACTT CCAGCGGGCGGGCGC GTTTCA GCGCCTCCTCGATGG TTTCGCCGGTGACGA putR 3640712 - 3641182 + | transcriptional regulator AsnC family TERM 3979 3641494 - 3641510 + G 71 -7.9 -3.96148 | overlap 3641495 GGCCTATCCTGTTTC CCCGGGA TCA TCCCGGC TTTCTGCTGGCAGCG Avi_4326 3641316 - 3641630 + | hypothetical protein Avi_4327 3641776 - 3642375 + | hypothetical protein Avi_4328 3643174 - 3642386 - | short chain dehydrogenase protein Avi_4329 3644553 - 3643186 - | Aminotransferase protein Avi_4330 3652239 - 3644668 - | polyketide synthetase protein TERM 3980 3644746 - 3644769 + g 70 -2.2 -4.72272 | overlap 3644750 CGCCTCATCCTTATC GCCCGTCCGC CCGC GCAGACTGAC TTTTTCATAGAGGCG TERM 3981 3646323 - 3646345 + g 82 -6.2 -4.84311 | overlap 3646324 3646336 ACACATGGTCCGCCC CCAGCGTTTC CAG GAAACGCCGC TTTTCTTCTGTGCCA Avi_4331 3652769 - 3653923 + | MFS permease TERM 3982 3654544 - 3654514 - g 79 -12.5 -3.4252 | GTTGATGGACGAGAA CCAGGCCAAGGGC TTTCC GCTCTCGGCCCGG CAGGTAACACGTGAA ispG 3654011 - 3655261 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase ompA 3655368 - 3656033 + | porin TERM 3983 3656090 - 3656067 - T 100 -16.8 -4.44046 | opp_overlap 3656067 3656071, overlap 3656071 CCCAGTCGAAACAAA GAAAGCCGCC GAAA GGCGGCTTTC TTGTTAAAGGCTGGC TERM 3984 3656067 - 3656090 + T 100 -16.8 -3.62597 | opp_overlap 3656067 3656071, overlap 3656071 CCCAGTCGAAACAAA GAAAGCCGCC GAAA GGCGGCTTTC TTGTTAAAGGCTGGC TERM 3985 3656086 - 3656071 - T 100 -11.8 -4.78326 | opp_overlap 3656067 3656071, overlap 3656067 GTCGAAACAAAGAAA GCCGCC GAAA GGCGGC TTTCTTGTTAAAGGC TERM 3986 3656071 - 3656086 + T 100 -11.8 -4.44667 | opp_overlap 3656071 3656067, overlap 3656067 GTCGAAACAAAGAAA GCCGCC GAAA GGCGGC TTTCTTGTTAAAGGC rhtB 3656762 - 3656124 - | RhtB family transporter ispA 3657702 - 3656851 - | geranyltranstransferase mtgA 3658037 - 3658702 + | monofunctional biosynthetic peptidoglycan transglycosylase Avi_4340 3658776 - 3659435 + | glutathione S-transferase TERM 3987 3659515 - 3659504 - f 95 -5.8 -5.44721 | overlap 3659505 3659506 ACGATGTCAAAAAAA TCCC GCCG GGGA CTGGTCAAACCCCTG rpmF 3659634 - 3659819 + | 50S ribosomal protein L32 TERM 3988 3659812 - 3659823 + T 90 -7.2 -5.04597 | opp_overlap 3659812 TGACGCCGAAGGAAA GCGC ATAA GCGC TTTTTCTATCTGACT TERM 3989 3659843 - 3659871 + T 88 -11.8 -3.8374 | opp_overlap 3659849, overlap 3659849 TCTATCTGACTATAT AAAAAAGGCCGG TTTTT CCGGCCTTTTTC TTTGCCATTTTTTGA TERM 3990 3659865 - 3659849 - T 100 -10.8 -5.39721 | opp_overlap 3659843 3659849 TGACTATATAAAAAA GGCCGG TTTTT CCGGCC TTTTTCTTTGCCATT TERM 3991 3659849 - 3659865 + T 100 -10.8 -5.29846 | opp_overlap 3659849, overlap 3659843 TGACTATATAAAAAA GGCCGG TTTTT CCGGCC TTTTTCTTTGCCATT TERM 3992 3659963 - 3659928 - T 81 -9.6 -4.05389 | overlap 3659959 3659960 TACAGATATTACAAA CCGCGCGGTGCAGGAA AACA CCCCTGCACAACGCCG TTGCGGCACCAGTTG Avi_4343 3660554 - 3659979 - | hypothetical protein TERM 3993 3660592 - 3660608 + H 70 -10.9 -2.78816 | GTCGTTATTATTGCT CTTCCCT GAG AGGGAAG TGTAATCGCAAATCG phbA 3660749 - 3661975 + | acetyl-CoA acetyltransferase TERM 3994 3661986 - 3662019 + F 100 -19.7 -2.78816 | opp_overlap 3661992, overlap 3661989 3661992 TCTGAGCCTATCGAG CCAGAAGCCCGATGG GGAA CCATCGGGCTTCTGA TATCGTAAACGGTGA TERM 3995 3661989 - 3662016 + F 100 -20 -2.66316 | opp_overlap 3661992, overlap 3661986 3661992 GAGCCTATCGAGCCA GAAGCCCGATGG GGAA CCATCGGGCTTC TGATATCGTAAACGG TERM 3996 3661992 - 3662013 + F 100 -15.9 -3.484 | opp_overlap 3661992, overlap 3661989 3661986 CCTATCGAGCCAGAA GCCCGATGG GGAA CCATCGGGC TTCTGATATCGTAAA TERM 3997 3662013 - 3661992 - f 100 -15.9 -3.36878 | opp_overlap 3661992 3661989 3661986 CCTATCGAGCCAGAA GCCCGATGG GGAA CCATCGGGC TTCTGATATCGTAAA TERM 3998 3662148 - 3662130 - f 70 -4.4 -4.46073 | opp_overlap 3662132, overlap 3662133 CGCCAAGACAATAAA CGAGCCGG GAA CCGATCCG GCCATATTTTACCTG phbB 3662322 - 3663047 + | acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis TERM 3999 3663123 - 3663092 - T 100 -17.4 -4.1822 | opp_overlap 3663097, overlap 3663097 CCTTATCCCAACAAA CAAAAGCCGCCGGA TCGC TCCGGCGGCTTTTC GCATTCAAATCTATG TERM 4000 3663118 - 3663097 - T 100 -17.3 -5.09762 | opp_overlap 3663097, overlap 3663092 TCCCAACAAACAAAA GCCGCCGGA TCGC TCCGGCGGC TTTTCGCATTCAAAT TERM 4001 3663097 - 3663118 + T 100 -17.3 -4.19506 | opp_overlap 3663097 3663092 TCCCAACAAACAAAA GCCGCCGGA TCGC TCCGGCGGC TTTTCGCATTCAAAT TERM 4002 3663151 - 3663137 - T 73 -11.4 -2.66272 | opp_overlap 3663146, overlap 3663134 3663133 TCGCATTCAAATCTA TGCCGC TTA GCGGCA GCGGCGCTCGTATTG Avi_4346 3663590 - 3663435 - | hypothetical protein TERM 4003 3663988 - 3664010 + H 70 -7.1 -4.11394 | gap 1, opp_overlap 3663991, overlap 3663991 TGTGTGGTCCCGAAG GAAGATAGGC TGTT GCC-ATCTTC TTTTGACAGTGCAGT TERM 4004 3666492 - 3666451 - g 72 -9.3 -3.66497 | gap 1, overlap 3666487 3666490 GAAGAAATCCTGAAA GGCCTCGGCTACCGCG-CCG ATG CGGTCAAGGCAGAAGAGGCC CAGGCCTTCCTTGGC TERM 4005 3666904 - 3666882 - g 81 -12.6 -3.55444 | TCCGCAGGGTGCAAA GCGCGCCCCG CAG CAGGGCGAGC AGAAGCCGGACGCTC mgpS 3664054 - 3667197 + | ATP-dependent helicase TERM 4006 3667213 - 3667254 + G 100 -9.3 -5.01732 | opp_overlap 3667213 GCCATGAGCGAACAA CAGCCACTCGCCGGACCCT CTCA ACGGATCGACAAGTGGCTG TTTTTTGCGCGAATT TERM 4007 3667254 - 3667213 - g 81 -11.7 -3.69395 | gap 1, opp_overlap 3667213 GCCATGAGCGAACAA CAGCCACTCGCCGGACCC TCTCAAC GGATC-GACAAGTGGCTG TTTTTTGCGCGAATT Avi_4348 3667201 - 3667602 + | hypothetical protein fdxA 3667944 - 3668294 + | ferredoxin TERM 4008 3668288 - 3668276 - f 81 -9.1 -4.08216 | TTATTTCTCGGAAAA GCCTG GCA CAGGC GACTGATTGGCGAAT TERM 4009 3668513 - 3668503 - f 75 -6.8 -4.38154 | opp_overlap 3668503 3668502 AGACTTGGGATAAAA CTGC ATA GCAG CTTCTGTTTTTTATG TERM 4010 3669244 - 3669254 + G 79 -6.8 -4.71426 | opp_overlap 3669251 GGAATGCGCAAGCTT TCGG AAA CCGA TTTTGTTGATCGGGC Avi_4352 3668926 - 3669597 + | transcriptional regulator CarD family TERM 4011 3669611 - 3669649 + T 100 -18.4 -3.31461 | opp_overlap 3669622 3669623, overlap 3669613 3669623 AAGCTTGCTCACTCC AACATAAAAAAGCCCGGC ATT GCCGGGTTTTTTTATGTC TTCTGCACATCCATG TERM 4012 3669613 - 3669647 + T 100 -21 -3.22475 | opp_overlap 3669622 3669623, overlap 3669611 3669623 GCTTGCTCACTCCAA CATAAAAAAGCCCGGC ATT GCCGGGTTTTTTTATG TCTTCTGCACATCCA TERM 4013 3669638 - 3669622 - T 100 -9.3 -5.47159 | opp_overlap 3669613 3669611 3669623, overlap 3669623 CTCCAACATAAAAAA GCCCGGC ATT GCCGGGT TTTTTTATGTCTTCT TERM 4014 3669623 - 3669637 + T 100 -12.8 -5.80248 | opp_overlap 3669622 3669623, overlap 3669613 3669611 TCCAACATAAAAAAG CCCGGC ATT GCCGGG TTTTTTTATGTCTTC TERM 4015 3669637 - 3669623 - T 93 -12.8 -3.87211 | opp_overlap 3669623 3669613 3669611, overlap 3669622 TCCAACATAAAAAAG CCCGGC ATT GCCGGG TTTTTTTATGTCTTC TERM 4016 3669723 - 3669781 + T 100 -9.6 -5.48623 | overlap 3669726 3669730 3669731 ATGTCCAGATCCCGA TGCGATGCTTTAGCGTCTGCCAGGTTCA TAT TGAACCAGACAGACGCTAAACTCTCTTG TTTTTATTTGTCTTT TERM 4017 3669726 - 3669778 + T 100 -15.7 -4.76311 | overlap 3669723 3669730 3669731 TCCAGATCCCGATGC GATGCTTTAGCGTCTGCCAGGTTCA TAT TGAACCAGACAGACGCTAAACTCTC TTGTTTTTATTTGTC TERM 4018 3669730 - 3669774 + T 100 -17.3 -3.51633 | overlap 3669726 3669723 3669731 GATCCCGATGCGATG CTTTAGCGTCTGCCAGGTTCA TAT TGAACCAGACAGACGCTAAAC TCTCTTGTTTTTATT TERM 4019 3669731 - 3669773 + T 100 -20.8 -2.6854 | overlap 3669730 3669726 3669723 ATCCCGATGCGATGC TTTAGCGTCTGCCAGGTTCA TAT TGAACCAGACAGACGCTAAA CTCTCTTGTTTTTAT Avi_4353 3671561 - 3669834 - | methyl-accepting chemotaxis protein TERM 4020 3669947 - 3669973 + g 74 -6.5 -4.42386 | opp_overlap 3669940 3669938, overlap 3669940 3669948 GATGAATATCGCGCT CCTGCGCCATC GTGTA GATGGCGAAGA TTTTCTGGCTGAGCG Avi_4355 3671937 - 3671722 - | hypothetical protein citE 3672833 - 3671934 - | citrate lyase beta subunit Avi_4357 3672945 - 3673196 + | hypothetical protein leuD 3673325 - 3673930 + | 3-isopropylmalate dehydratase small subunit TERM 4021 3673933 - 3673978 + F 100 -2.7 -5.61881 | gap 1, overlap 3673907 3673935 CCCCTGGGCCTGATC CCTAAAGCGTGTTGC-GG CTTATCAGCCT CAAGCAACACGCTTTAAG TTTTTGTTTTTACGC TERM 4022 3674101 - 3674120 + F 100 -13.6 -5.28942 | GGCAGTCATCGCTAA GGCGGAAC GCAG GTTCCGCC TTTTTCTTTGCCATG leuB 3674236 - 3675348 + | 3-isopropylmalate dehydrogenase TERM 4023 3675400 - 3675368 - f 90 -14.9 -2.8474 | overlap 3675365 CGGGATTGATAAGGA TTTCCAGCGCAAGAC ACA GGCTTGCGCTGGAAC AGGATTACAGTGTCA Avi_4360 3675483 - 3676289 + | lipid A 1-phosphatase protein TERM 4024 3676335 - 3676308 - T 100 -21.4 -4.48713 | TGCAGCAATAAGAAA GGCGCCCGGAAA GTGA TTTCCGGGCGCC TTGACGTGTGACGGG mtbA 3678241 - 3676358 - | MFS permease TERM 4025 3678050 - 3678032 - G 78 -9.5 -3.96327 | overlap 3678044 AGGCCGCACCAGAAA GCCGGCG GCAAA CGCCAGC AGCGTGAAAATATTG TERM 4026 3678699 - 3678676 - H 100 -14.6 -3.28924 | overlap 3678680 CACGGCCGGGGACAA GGAAGACGCG GTCA CGCGCCTTCC CCCTCAAAAAACCGA asd 3678740 - 3679774 + | aspartate-semialdehyde dehydrogenase TERM 4027 3679792 - 3679817 + G 93 -12.5 -4.27316 | ACGGGATTTCGGCAA CGGCTGGACGC AATC GCGCTCAGCCG TTTTGCCTTGCCCGA TERM 4028 3680179 - 3680169 - g 70 -2.4 -4.77157 | TGAATTCATGAAAAA GCGC GGT GGGC AAACCATCATCAGCC Avi_4364 3679771 - 3680721 + | hypothetical protein TERM 4029 3680734 - 3680764 + F 81 -9 -4.0641 | opp_overlap 3680733 TGAGACCTACAGCAC CGTAGAGAAAACCG GCA TGGTTTTCGCTTCG TTTCTATAGATGAGA TERM 4030 3680823 - 3680796 - f 80 -12 -3.41581 | opp_overlap 3680797, overlap 3680797 CAATCCATGAATGAA GGGCGGCGCATT GGAA AATGCACCGCCT TTTTGTTTGGAAGTG TERM 4031 3680822 - 3680797 - f 95 -15.5 -2.64466 | opp_overlap 3680797, overlap 3680796 AATCCATGAATGAAG GGCGGCGCATT GGAA AATGCACCGCC TTTTTGTTTGGAAGT TERM 4032 3680797 - 3680822 + F 100 -13.3 -5.27938 | opp_overlap 3680797 3680796 AATCCATGAATGAAG GGCGGCGCATT GGAA AATGCACCGCC TTTTTGTTTGGAAGT Avi_4365 3680921 - 3682795 + | hypothetical protein TERM 4033 3682847 - 3682819 - T 100 -18.2 -4.53602 | GCCACAGCAAACAAA CAACGGGACCGG TTTAT CCGGTCCCGCTG CATAGAAGAGGCTCT cah 3683550 - 3682909 - | carbonate dehydratase pdxK 3684500 - 3683622 - | pyridoxamine kinase TERM 4034 3684575 - 3684593 + H 85 -6.7 -4.75063 | gap 1 AAATTTTGATGGCTA GCGG-CGA AAAT TCGACCGC TTTTTGGGATTTTGT TERM 4035 3686860 - 3686847 - g 72 -4.5 -4.57341 | AAGCTTTCTGAAAAA TCGCG TCCG CGCAA ACTGGCGGAACTGCG TERM 4036 3687538 - 3687553 + G 75 -11.8 -3.28712 | ACGACGCTTTCGCGT CCGGCG GTTC CGCCGG TTATGACCACAAGAA TERM 4037 3687796 - 3687786 - g 75 -5.4 -4.70659 | CCGGACATGGAAAAA TCCT TCC AGGA ACGCAAGCGGATGTT gdh 3684738 - 3689543 + | NAD-glutamate dehydrogenase TERM 4038 3689554 - 3689588 + F 85 -13.6 -2.80113 | opp_overlap 3689564 CGTGAAAGGCTCGTT GCTTTAATGAGGCCGG TTT CCAGCCCCATTGAAGC TGTCATGAGATAATG TERM 4039 3689640 - 3689602 - f 74 -10.4 -3.54475 | gap 2 GCTGTCATGAGATAA TGCCAGTGTCGCCGCCGA GATCA TCGGCTGCGACA--GGCA CGACAATGCAATCAG TERM 4040 3689962 - 3689979 + G 79 -6.9 -4.63527 | overlap 3689952 3689965 TGCTCTGGCAAGCCG TCCCCGG CTCA CCGGTGA TTTTTCCGCTGGTGC Avi_4369 3689700 - 3691022 + | hypothetical protein TERM 4041 3691094 - 3691049 - T 100 -17.1 -2.56046 | opp_overlap 3691055 3691060, overlap 3691060 TCAAATCTGAATGCA GCATAAAAAAACCGGCTGAGA TCAC TCTCAGCCGGTTTTCTTGTGT CAAATAATGAAGGTT TERM 4042 3691055 - 3691088 + T 100 -16.9 -3.50869 | opp_overlap 3691049 3691060, overlap 3691060 CTGAATGCAGCATAA AAAAACCGGCTGAGA TCAC TCTCAGCCGGTTTTC TTGTGTCAAATAATG TERM 4043 3691060 - 3691083 + T 100 -16.8 -4.84311 | opp_overlap 3691049 3691060, overlap 3691055 TGCAGCATAAAAAAA CCGGCTGAGA TCAC TCTCAGCCGG TTTTCTTGTGTCAAA TERM 4044 3691083 - 3691060 - T 100 -16.8 -5.67063 | opp_overlap 3691060 3691055, overlap 3691049 TGCAGCATAAAAAAA CCGGCTGAGA TCAC TCTCAGCCGG TTTTCTTGTGTCAAA chvB 3699611 - 3691110 - | beta (1-->2) glucan biosynthesis protein TERM 4045 3691829 - 3691856 + g 70 -4 -4.56597 | opp_overlap 3691825, overlap 3691831 CATCGAAATAGCCAC GGCGGTAGTGAT CGCC ATCCCAACCGGC TTTTTCCAGCGCAGC TERM 4046 3692953 - 3692976 + g 76 -12.4 -3.34947 | opp_overlap 3692968, overlap 3692968 3692969 GTTTCCGCATCATGG GACGGCAGCA CGAA TGCCGCCGTC TTCTGCGGATTGTTG TERM 4047 3695260 - 3695286 + g 76 -4.9 -4.7416 | opp_overlap 3695240 3695259 TCATGGAAACCATAG GCGCCAAGCGC GCCAA GCGCCCGGAGC TTTTTCAGGTTTTCA TERM 4048 3695837 - 3695826 - G 71 -7.2 -4.22346 | overlap 3695827 GAAATCCATGGAAAA CGCG AGGT CGCG GCTGCGGTCACGCAG TERM 4049 3697503 - 3697466 - G 100 -17.1 -3.64103 | opp_overlap 3697471 CATCGACATGGTAAA GGCCCTTACCGGTGAAG CTGC CTTCACCGGTAATGTCC TGATAGACATCAGAA TERM 4050 3697471 - 3697498 + g 87 -17.2 -2.82635 | opp_overlap 3697466 ACATGGTAAAGGCCC TTACCGGTGAAG CTGC CTTCACCGGTAA TGTCCTGATAGACAT TERM 4051 3698554 - 3698578 + g 77 -7.8 -4.36914 | overlap 3698542 3698542 TTCGACAGATCGATG GCGATCTGGG CTATT TCCAGCTCGC TTTTGTCGGAACGGC TERM 4052 3699398 - 3699417 + g 70 -4.8 -4.48987 | opp_overlap 3699398 CGGTGGTGCGATAAA CGCGCAGG ATTT CCCGCTCG TTTTCCTTATGCCGG TERM 4053 3699852 - 3699810 - H 72 -11.6 -2.52464 | opp_overlap 3699817, overlap 3699817 3699830 CTCGCCTTGAAGGCA TTGCAAATATCTCAAATG CATCAAT CGCTTGAGATATTTGCAA ACGGAATACGAAGAG TERM 4054 3699889 - 3699859 - H 72 -9.8 -3.28001 | opp_overlap 3699859, overlap 3699865 TATTTGCAAACGGAA TACGAAGAGTCATC TTC AATGACTCCACGTA TTAATCCGTCAATCC hipO 3700210 - 3701349 + | hippurate hydrolase TERM 4055 3701433 - 3701408 - T 100 -18.3 -5.05113 | opp_overlap 3701408 TGCAGACAAACAAAA GGCGCGGCTCC CTGC GGAACCGCGCC TTTCTTCAACAGATA TERM 4056 3701408 - 3701433 + T 100 -16.1 -4.1552 | opp_overlap 3701408 TGCAGACAAACAAAA GGCGCGGCTCC CTGC GGAACCGCGCC TTTCTTCAACAGATA chvA 3703214 - 3701463 - | beta (1-->2) glucan export ATP-binding protein aviR 3703490 - 3704230 + | transcriptional regulator LuxR family TERM 4057 3707182 - 3707171 - g 71 -7.2 -4.1466 | ATTGAAGGGCGAAAA GCCG TATA CGGC TGTGCCGGGCTCACT TERM 4058 3707432 - 3707418 - g 75 -4.2 -4.81249 | overlap 3707420 GCCGAAATCGAAAAA GGCAAG ACA CTTGTC ATCGTCAATCAGGCA pycA 3704337 - 3707798 + | pyruvate carboxylase TERM 4059 3707913 - 3707942 + T 73 -9.1 -3.66556 | opp_overlap 3707914, overlap 3707914 CACGGCGCTGTAGAG AGGTGGCGCGCCC ATCA GGATGCGCCGCCC TTATCTTGGAAACTT TERM 4060 3707914 - 3707941 + T 77 -12.6 -2.79452 | opp_overlap 3707914, overlap 3707913 ACGGCGCTGTAGAGA GGTGGCGCGCCC ATCA GGATGCGCCGCC CTTATCTTGGAAACT Avi_4376 3708423 - 3707980 - | hypothetical protein TERM 4061 3708627 - 3708653 + r 71 -2.3 -4.95167 | opp_overlap 3708627 AAAATGCTGGTAATA TGAACTGCC ATTGAAGCC GACAGTTCA TTTTCTTATTCGTTC TERM 4062 3708699 - 3708721 + r 74 -10.4 -3.53811 | GAGCGACTTGGTGAA GGGGGCGGAG AGA CCCCGACCCC TTTGCAAAGACTGAG acs 3710702 - 3708747 - | acetyl-coenzyme A synthetase TERM 4063 3710301 - 3710315 + g 74 -7.8 -4.1552 | opp_overlap 3710300 CATGGGCATATAGAT GGTGAC GCG GTCGCC TTTCTTGACGCCATG TERM 4064 3710417 - 3710446 + g 71 -7.1 -4.13945 | gap 1, opp_overlap 3710426 AGGGATTGTCCCCTT CCCA-GATGATCGC GGT GCGCTCACCATGGG TTTTCAGATGGCGGT Avi_4378 3710992 - 3711687 + | hypothetical protein TERM 4065 3711744 - 3711711 - T 83 -10.3 -4.09685 | gap 1, opp_overlap 3711712 3711717, overlap 3711712 3711717 TTTCATTGTGGAAAA TTCAAACCCCGGTGGC TCC GCC-CCGGGGTTTTAT TCTGCGGGTTTTATT TERM 4066 3711743 - 3711712 - T 87 -13.8 -3.05597 | gap 1, opp_overlap 3711712 3711717, overlap 3711711 3711717 TTCATTGTGGAAAAT TCAAACCCCGGTGGC TCC GCC-CCGGGGTTTTA TTCTGCGGGTTTTAT TERM 4067 3711712 - 3711743 + T 95 -13.8 -3.36919 | gap 1, opp_overlap 3711711 3711712 3711717, overlap 3711717 TTCATTGTGGAAAAT TCAAACCCCGGTGGC TCC GCC-CCGGGGTTTTA TTCTGCGGGTTTTAT TERM 4068 3711738 - 3711717 - T 100 -13.7 -3.92659 | gap 1, opp_overlap 3711717 3711712, overlap 3711712 3711711 TGTGGAAAATTCAAA CCCCGGTGGC TCC GCC-CCGGGG TTTTATTCTGCGGGT TERM 4069 3711717 - 3711738 + T 100 -13.7 -4.77567 | gap 1, opp_overlap 3711712 3711711 3711717, overlap 3711712 TGTGGAAAATTCAAA CCCCGGTGGC TCC GCC-CCGGGG TTTTATTCTGCGGGT Avi_4380 3712579 - 3711920 - | hypothetical protein TERM 4070 3714718 - 3714693 - g 79 -6.9 -4.66833 | opp_overlap 3714696 3714698, overlap 3714678 3714679 3714698 GTCGAAGTCGAAAAA GAACGTCATCG ACCC CGATGATATTC TGGGCTCCTACGGCG leuS 3712780 - 3715410 + | leucyl-tRNA synthetase Avi_4382 3715400 - 3715924 + | hypothetical protein TERM 4071 3716096 - 3716140 + F 72 -8 -3.87149 | gap 1, opp_overlap 3716096 3716097, overlap 3716097 3716099 ACTTTCACTGACAAA CT-CCAGGGCATCATGCGTTT AATC AAACGCATGATGCCCTATCAC TTTAAATTTGCTGCA TERM 4072 3716139 - 3716096 - f 100 -14 -3.92075 | opp_overlap 3716096 3716097 3716099, overlap 3716097 ACTTTCACTGACAAA CTCCAGGGCATCATGCGTTT AATC AAACGCATGATGCCCTATCA CTTTAAATTTGCTGC TERM 4073 3716097 - 3716139 + F 75 -11.5 -2.91807 | gap 1, opp_overlap 3716097 3716096, overlap 3716096 3716099 CTTTCACTGACAAAC T-CCAGGGCATCATGCGTTT AATC AAACGCATGATGCCCTATCA CTTTAAATTTGCTGC TERM 4074 3716138 - 3716097 - f 95 -15.3 -2.94924 | opp_overlap 3716096 3716097 3716099, overlap 3716096 CTTTCACTGACAAAC TCCAGGGCATCATGCGTTT AATC AAACGCATGATGCCCTATC ACTTTAAATTTGCTG TERM 4075 3716099 - 3716136 + F 100 -20.1 -2.69528 | opp_overlap 3716097 3716096, overlap 3716097 3716096 TTCACTGACAAACTC CAGGGCATCATGCGTTT AATC AAACGCATGATGCCCTA TCACTTTAAATTTGC holA 3716198 - 3717241 + | DNA polymerase III, delta subunit parB 3718218 - 3717340 - | chromosome partitioning protein TERM 4076 3717731 - 3717702 - G 78 -8.6 -4.15106 | gap 1, opp_overlap 3717702 3717727, overlap 3717693 CAGGAAGCTTCAAAA GCCGCAGGC-TGT TGGCC ACATGGCTGCGGC TCTTGCCGATAATCT parA 3719117 - 3718323 - | chromosome partitioning protein TERM 4077 3719046 - 3719072 + g 95 -10.2 -4.86621 | gap 1, opp_overlap 3719046 3719045 GGTTGCAAGATTAAT GGCGGTCGTCG TCTTGC CGAC-ACCGCC TTTTTGATTGGCAAT gidB 3719771 - 3719136 - | glucose inhibited division protein TERM 4078 3719342 - 3719327 - G 79 -5.4 -4.74285 | AGGCATAAGAGAAAA GCAGAT CGAG ATCCGC AAGCGCTCGTGCCGA gidA 3721641 - 3719776 - | glucose inhibited division protein A trmE 3722986 - 3721676 - | tRNA modification GTPase TrmE TERM 4079 3721736 - 3721717 - G 71 -7.8 -4.08394 | overlap 3721696 3721694 AGATTTTGCCCAAAA GCGTTTCG GTAT CGATACGC CCAACCAGGCGACCC TERM 4080 3721846 - 3721834 - G 75 -5.5 -4.58308 | overlap 3721830 GATCAATGAAAGAAA CTGCA TTT CGCAG GCATTCAATATGTCG TERM 4081 3723097 - 3723076 - R 100 -13.7 -4.35524 | overlap 3723070 GCCTCAAATGCAAAA CCCCCGACC TTGC GGTCGGAGG TTGAAACTATGAATC rho 3724400 - 3723135 - | transcription termination factor Rho Avi_4392 3725135 - 3724596 - | hypothetical protein TERM 4082 3725077 - 3725066 - G 86 -5.8 -5.1101 | CGATCAGGCAAAAAA TGGC AAGG GCCA CCAGGGCCCGCAGGC hemE 3726177 - 3725137 - | uroporphyrinogen decarboxylase SEQUENCE gi|222109117|ref|NC_011991.1| Agrobacterium vitis S4 plasmid pAtS4b, complete sequence (length 130435) TERM 1 337 - 319 - g 72 -4.5 -4.59773 | CTGCAGCCGGAAAAA TCGAACG CGTTT CGATCGA CAAGACCATTGCTGA repA 279 - 1496 + | replication protein A repB 1493 - 2491 + | replication protein B TERM 2 2576 - 2548 - f 86 -6 -5.10163 | gap 1 AACCGCAAAAGAAAA GGCCCCCA-AACG TCGC CGTCGTGGAAGCC CTTCTTATAGTGTCG TERM 3 2726 - 2708 - g 71 -11.6 -3.28765 | opp_overlap 2724 ACACGGGAAATGTAA CGACGCCC TTT GGGCGGCG GCCGATGACGCTTGC repC 2674 - 3903 + | replication protein C Avi_9504 4750 - 3932 - | alpha/beta hydrolase protein Avi_9505 4953 - 5690 + | GGDEF domain-containing protein TERM 4 5963 - 5947 - g 73 -12.3 -3.07443 | CTACATCTCACCCAA GCGCCTT TCC AAGGCGC TCGGCGTCCCGGTAA Avi_9506 5858 - 6244 + | hypothetical protein Avi_9507 6241 - 6768 + | hypothetical protein TERM 5 6899 - 6914 + G 74 -6 -4.46926 | overlap 6897 6900 GCGATACCGGCCAGG CCGGCC GGGC GGCCGA TTTTGTCCTAGCATG Avi_9508 6832 - 7143 + | hypothetical protein intX 8302 - 7190 - | phage-related integrase Avi_9511 8765 - 8346 - | nucleic acid-binding protein TERM 6 9038 - 9060 + H 72 -4.9 -4.63542 | gap 1, overlap 9037 9038 9039 GTATGGGTCTCTTGT C-GTGCAGAC GGTA GTTTGCACCG TTTTTCGACATTCTG Avi_9513 9238 - 10335 + | hypothetical protein Avi_9514 10969 - 10397 - | hypothetical protein TERM 7 10545 - 10555 + g 74 -8.2 -4.12532 | opp_overlap 10545 TCGTTGTAACATATA GCGC GGA GCGC TTTATATATAGGAGG rpsB 11903 - 10980 - | 30S ribosomal protein S2 TERM 8 11343 - 11391 + g 72 -4.9 -4.5774 | gap 4, opp_overlap 11360 11361, overlap 11361 GCAGTTGGTGTCGAT GATCGC-AACGACAGGAATGCCAAG ACG CTTGGC-TTC-T-TCGATCGCGATC TTTTCCTTGTTGGTG TERM 9 11361 - 11375 + g 75 -10 -3.67775 | opp_overlap 11361 11360, overlap 11343 CGCAACGACAGGAAT GCCAAG ACG CTTGGC TTCTTCGATCGCGAT TERM 10 12338 - 12322 - g 77 -12.3 -3.54459 | overlap 12311 GTAAGGCCTCGGAAA CTGACGG CCC CCGTCAG CTGGGCATCGTCGAG Avi_9517 12111 - 15983 + | hypothetical protein TERM 11 16205 - 16226 + T 70 -6.7 -4.08216 | gap 1 AACGACAGCATGTGG TGCCT-AGAT TCT ATCTCAGGCA TTTTACACAACCTGA Avi_9519 16715 - 16434 - | hypothetical protein Avi_9520 16828 - 17115 + | hypothetical protein Avi_9521 17350 - 18660 + | hypothetical protein Avi_9522 18787 - 19353 + | hypothetical protein Avi_9524 19826 - 20632 + | hypothetical protein Avi_9525 20632 - 22509 + | hypothetical protein Avi_9526 24360 - 22615 - | hypothetical protein Avi_9527 25332 - 24544 - | hypothetical protein TERM 12 26197 - 26211 + G 73 -2.8 -4.72986 | opp_overlap 26199, overlap 26199 GAGACTGACCCAACC AAGCAA TTT TTGCTC TTTTTCATCGCGCTG Avi_9528 25510 - 26523 + | hypothetical protein Avi_9529 26662 - 27747 + | hypothetical protein Avi_9530 29846 - 28041 - | hypothetical protein Avi_9531 33256 - 29843 - | helicase ATP-binding protein TERM 13 30193 - 30235 + g 78 -3.8 -4.90778 | ATACAAAGTTTCCGT CGGCCCTCGGACTCGCGAAA CCC TGTAGCGTGCCGGCGGGCTG TTTTATTTGCCTGCC TERM 14 30622 - 30636 + g 84 -2.1 -5.4251 | TGTTCACGAAACGGC TGACG CGCCC CGTTA TTTTTTCTCTCTCGC TERM 15 30939 - 30921 - G 70 -11.7 -2.82516 | opp_overlap 30899 30919 TTTCCCAGCAGGAGA GCGCCGA TCATT TCGGCGC CATTGGCTCTGGCCG TERM 16 33423 - 33411 - R 76 -7.7 -4.25104 | opp_overlap 33417 CCCGGCCTATCAAAA TTCGC AAG GCGAA GCCGCTTATCGAGAA pbpB2 35573 - 33816 - | penicillin-binding protein TERM 17 34682 - 34694 + g 79 -5.5 -4.81734 | overlap 34680 TCGCGTTGCTCATCC GGTTG AAC CAGCC TTTTTCATACTCTTT TERM 18 35606 - 35595 - R 79 -2.2 -5.26316 | gap 1, overlap 35597 TCACTCGACAAAAAA GCGCG GCC CG-GC AACTTGTTGCGGAAC Avi_9533 36209 - 35784 - | transcriptional regulator Cro/CI family TERM 19 35947 - 35937 - G 78 -8.2 -4.52589 | opp_overlap 35937, overlap 35938 GCGGGTGATAGAAAA CGCC GCT GGCG TGGCAGTGTGATGGA Avi_9535 36512 - 36246 - | hypothetical transcription regulator protein Avi_9536 36609 - 36917 + | hypothetical protein Avi_9537 36960 - 37943 + | hypothetical protein Avi_9538 37940 - 38665 + | hypothetical protein Avi_9539 38678 - 38971 + | hypothetical protein TERM 20 40229 - 40241 + G 76 -4.7 -4.79352 | overlap 40230 TCAACCGCTGGTTTG CCCGG CAC CCGGA TTTTGTTCTGGGTGA TERM 21 41659 - 41673 + G 81 -8.5 -4.38927 | opp_overlap 41619 41618 CATCTGAAACTTCCC GGCGC ATCGA GCGCC TTTGTTCTGTACGGG Avi_9541 39073 - 44178 + | helicase SNF2 family TERM 22 44229 - 44242 + T 72 -8.1 -3.96483 | opp_overlap 44226 CAGAGGGAAGAAGCT TGGCG AACT CGCCA TTCTTTCAATACGCT Avi_9542 44698 - 44261 - | hypothetical protein Avi_9545 45192 - 45626 + | hypothetical protein Avi_9546 45642 - 45941 + | CspA-like protein Avi_9549 46520 - 46023 - | hypothetical protein Avi_9550 46876 - 46526 - | hypothetical protein TERM 23 46579 - 46562 - G 81 -11.3 -3.92373 | opp_overlap 46544 GACCGCATCGATAAA GTCGAGG ACAT CCTCGAC CCGGCCGGTGCGAAC Avi_9551 47209 - 46925 - | hypothetical protein parB 47213 - 49003 + | chromosome partitioning protein TERM 24 49039 - 49061 + F 100 -22 -5.07652 | TTCCGATCGCCATCC CCGCCGCCGG TTT CCGGCGGCGG TTTTCTTTTCCACGC Avi_9554 49097 - 49573 + | hypothetical protein TERM 25 49818 - 49836 + G 90 -11.6 -4.258 | GGTCCAGAGGGGCCG GGCGCCAG ACC CCGGCGCC TTTCTTGATCGGTAC Avi_9555 49570 - 50034 + | hypothetical protein Avi_9556 50031 - 50450 + | hypothetical protein Avi_9557 51065 - 50580 - | hypothetical protein Avi_9558 51064 - 51651 + | hypothetical protein TERM 26 51661 - 51680 + FH 100 -15 -4.13767 | GGCTAGCGGTATGTG GGCGGGAC TTCG GTCCCGCC TTTTCCGCTGGCAGA Avi_9559 51766 - 52245 + | hypothetical protein TERM 27 53314 - 53353 + F 74 -7.7 -4.08767 | gap 1 CCCGTCGCTTTGAGG CCGCCGTAACG-GGCCGC ATGGG GCGGCCTTGAAACGGAGG TTTTAAGGAAATGAC ardC 53364 - 54290 + | antirestriction protein Avi_9566 54290 - 54841 + | hypothetical protein TERM 28 54957 - 54988 + G 76 -5 -4.77036 | overlap 54959 ACTGATGGCAGCGCA TGGCGAGATCGGAC CCAT GCCCGATTGCGCGA TTTTTGCTGATACCG Avi_9567 54838 - 55782 + | hypothetical protein Avi_9569 56224 - 55940 - | hypothetical protein Avi_9570 56896 - 56381 - | hypothetical protein TERM 29 56518 - 56498 - G 75 -8.9 -4.08064 | opp_overlap 56516 56517 AAGCCCGCTGGAAAA CGCTCCGGG CAC CCCATAGCG CGCGAAGTGCGGTTT TERM 30 57215 - 57239 + H 70 -9.9 -3.14132 | opp_overlap 57199, overlap 57217 CCCACACGACCAGTC GAGCGGGGACC CCG GGTCGCCGCTA TTCCTCGCGCGACAA TERM 31 57217 - 57237 + H 81 -12.5 -3.13403 | opp_overlap 57199, overlap 57215 CACACGACCAGTCGA GCGGGGACC CCG GGTCGCCGC TATTCCTCGCGCGAC TERM 32 57296 - 57321 + H 72 -9.7 -3.36515 | gap 1, overlap 57310 TTCGTTTCAGCCCCT CCGGGGTGCGGT CCG ATCGT-CCCCGG TCTTTGCGACTGCCA Avi_9572 57378 - 57695 + | hypothetical protein TERM 33 58260 - 58304 + F 78 -9.5 -3.92373 | gap 1 ATCCAAATCGACGCT TGCCTGAGGAC-GTTTTGCA GGTCCA TGCAAAACTGTTCTCGAGCA TTTATCCATGGGCTG Avi_9577 58430 - 59485 + | hypothetical protein TERM 34 59728 - 59705 - f 89 -14.6 -2.53876 | opp_overlap 59721 59723 CCCTATCGGAACCCA CCCCACTCGA CCAG TCGAGCGGGG ACCCCGGGTCGCCGC TERM 35 59721 - 59745 + F 70 -9.9 -3.14931 | opp_overlap 59705, overlap 59723 CCCACTCGACCAGTC GAGCGGGGACC CCG GGTCGCCGCTA TTCCTCGCGGGTCAA TERM 36 59723 - 59743 + F 81 -12.5 -3.1372 | opp_overlap 59705, overlap 59721 CACTCGACCAGTCGA GCGGGGACC CCG GGTCGCCGC TATTCCTCGCGGGTC TERM 37 60249 - 60205 - g 82 -10 -4.20516 | gap 2, opp_overlap 60215, overlap 60208 CCGGGACTGAACAAA GATC--GCCAACGGCCCCGCCC GAC AGGCGGGGCCTCTGTCCCGATC GGCAACCGCATCGAT TERM 38 60244 - 60208 - g 70 -12.1 -2.81702 | opp_overlap 60215, overlap 60205 GGACTGAACAAAGAT CGCCAACGGCCCCGCCC GAC AGGCGGGGCCTCTGTCC CGATCGGCAACCGCA TERM 39 60215 - 60237 + G 90 -17.7 -2.88544 | opp_overlap 60208 60205 ACAAAGATCGCCAAC GGCCCCGCC CGACA GGCGGGGCC TCTGTCCCGATCGGC Avi_9580 59884 - 60285 + | hypothetical protein Avi_9583 60785 - 60465 - | hypothetical protein TERM 40 60686 - 60711 + g 93 -12.6 -4.37886 | opp_overlap 60691 CGCCTGACATCGAGA GCAGAGGCGG CTTCGT CCGCCTTTGC TTTTCTGCAGAGTAG TERM 41 60999 - 61029 + H 100 -24.1 -3.21747 | AAGTCTGAACGTGAA GCCGGAGGTGGGC ATCGA GCCCACCTCCGGC TTACTGGTGCCATAC Avi_9585 61091 - 61414 + | hypothetical protein TERM 42 61420 - 61403 - T 83 -12.7 -3.36878 | opp_overlap 61397 GTCATCGACGCAGAA CCGCCCT TCTG AGGGCGG CACCACCTTTGCCGA Avi_9587 62268 - 61930 - | hypothetical protein Avi_9588 62570 - 62265 - | hypothetical protein TERM 43 62490 - 62502 + g 78 -9.1 -4.12532 | overlap 62479 AGCGGTCGCGCCTTT CAGCC GCA GGCTG TTTGTCTCTCCGAAC traG 64638 - 62749 - | Ti-type conjugative transfer system protein TraG TERM 44 63588 - 63613 + g 80 -9.7 -4.11371 | gap 1 TTTCAGGCTGGGCGA GCCGCTTGCGCA CCA TGCGC-AGCGAC TTTTCGCCCGTCTTG TERM 45 64187 - 64170 - G 81 -12.7 -3.50853 | opp_overlap 64167 TTTCTCCAACGACAA TCCCGCC GATC GGCGGGA AAAGCTTTGCGGCGT traD 64903 - 64625 - | conjugal transfer protein Dtr system traC 65156 - 64932 - | conjugal transfer protein Dtr system TERM 46 65269 - 65251 - H 76 -12.4 -2.62425 | opp_overlap 65251 65254, overlap 65250 AATCAACTTTACAAG GCACCGGC CTT GCCGGTAC TTTTTGGTCTGTTTC TERM 47 65251 - 65269 + H 100 -10.2 -4.90217 | opp_overlap 65250 65251, overlap 65254 AATCAACTTTACAAG GCACCGGC CTT GCCGGTAC TTTTTGGTCTGTTTC TERM 48 65254 - 65266 + H 76 -10.5 -3.31261 | opp_overlap 65251 65250, overlap 65251 CAACTTTACAAGGCA CCGGC CTT GCCGG TACTTTTTGGTCTGT TERM 49 65301 - 65315 + H 79 -10 -3.83026 | opp_overlap 65290 65301 65299 AACAGCGCAGTAATA CGTTGC TGC GCAACG TTTGCTCTACGCGCC TERM 50 65315 - 65301 - H 70 -10 -3.15346 | opp_overlap 65301, overlap 65290 65299 AACAGCGCAGTAATA CGTTGC TGC GCAACG TTTGCTCTACGCGCC TERM 51 65991 - 66023 + G 73 -11.4 -3.40403 | gap 1, opp_overlap 65982 65980, overlap 65994 CAAACATCTGCGCTT GAACGGCCAT-GACA TTCA TGTCGACGGCCGTTC TTATGCTGAGCGCGG TERM 52 67278 - 67288 + G 72 -5.4 -4.41494 | AAATTTTAGCCCCGG CGAT CAG ATCG TTTTCCTTAAAAATG TERM 53 67698 - 67657 - g 81 -2.9 -5.26875 | gap 1, opp_overlap 67666, overlap 67658 GCTGGAATGAAAAAA TTCCGC-GAAGGCGACGA TGTGAAG CCGACGCCTTATGCGGAC CTGCTGGACGCAGCT TERM 54 69246 - 69234 - g 74 -7.7 -4.25104 | GGTGCTCGATGAAAA GTTCG GCG CGAAC ACCTTCAGCAGCGCC traA 65368 - 69438 + | Ti-type conjugative transfer relaxase TraA traF 69435 - 69968 + | conjugative transfer signal peptidase TraF traB 69985 - 71127 + | conjugal transfer protein Dtr system traH 71566 - 72201 + | conjugal transfer protein Dtr system Avi_9601 73140 - 72574 - | hypothetical protein Avi_9603 73695 - 73516 - | hypothetical protein Avi_9605 73734 - 74039 + | hypothetical protein Avi_9606 75141 - 74455 - | hypothetical protein hisC 76346 - 75240 - | histidinol-phosphate aminotransferase Avi_9608 77671 - 76409 - | isopropylmalate/homocitrate/citramalate synthase TERM 55 77095 - 77078 - G 100 -9.1 -5.01732 | AAGTTCGTCAAAAAA CCATCGG CTTT CCGACGG AAAAAACTGCCCCAC mmsB 78636 - 77770 - | 3-hydroxyisobutyrate dehydrogenase Avi_9610 80637 - 78790 - | ABC transporter nucleotide binding/ATPase protein Avi_9611 81372 - 80698 - | hypothetical protein Avi_9612 82090 - 81422 - | transcriptional regulatory protein TERM 56 82848 - 82835 - g 91 -4.5 -5.64274 | TCAGCCATAAAAAAA GCCTG CGGG CAAGC GAGCTGTCAATGCCG Avi_9615 82444 - 82893 + | Transposase istB 83491 - 82904 - | IS21 family transposase Avi_9617 84449 - 83757 - | transposase TERM 57 84323 - 84279 - G 100 -32.4 -2.72661 | gap 1, overlap 84314 GAGTATCGGCAATGA CGCGCCGCTGGTCTTCCGGGG CGCG CCCCGGAAGACCAGCGGC-CG CAGCACCTGGGGAAG Avi_9618 84516 - 84752 + | Transposase Avi_9620 84801 - 85253 + | hypothetical protein Avi_9622 85269 - 85622 + | transposase TERM 58 85610 - 85635 + F 93 -12.5 -3.90038 | GGTGACGGCGCCGTC GGCGGCAGGGT GAAT ATCCGGCCGCC TTTGCATTGTTTAAT Avi_9623 85686 - 87305 + | transposase TERM 59 87497 - 87484 - T 71 -2.3 -5.00616 | overlap 87485 TCGCCTTTCAAAAAA GTCCG CGAG CGGAA GAATTGGTCAAGGCG Avi_9626 89086 - 87689 - | glycosyltransferase TERM 60 88195 - 88183 - G 74 -6.9 -4.4078 | opp_overlap 88183 CTGTCGCAACTAAAA GGCGA TAT CCGCC TTTCACCCCGACCCC TERM 61 88621 - 88641 + g 73 -11.8 -3.02511 | AAAGTGCTAGGATGG CCGCGCGG CTGGT CCGCGTGG TCTTGGGGCAATAGC cysN 91069 - 89159 - | sulfate adenylate transferase subunit 1 TERM 62 89687 - 89711 + g 70 -2 -4.80167 | gap 1 ACCAGCGCCGGACAG GCCGGT-GAAC CAAA GCACGACCGGC TTTTGGTTTTTGATG Avi_9630 91971 - 91069 - | sulfate adenylate transferase subunit 2 TERM 63 91144 - 91157 + g 70 -3.8 -4.56914 | overlap 91136 GCGACCCTGACGCTC CGAC ATTCTA GTCG TTTTCATTTCCCTAA TERM 64 91161 - 91175 + g 85 -2.9 -5.40072 | ACATTCTAGTCGTTT TCATT TCCCT AATGA TTTTTTTGACCGAGG Avi_9632 92989 - 92048 - | hypothetical protein TERM 65 92204 - 92178 - G 75 -5.2 -4.56597 | gap 1, overlap 92179 92180 GTCGTTCCCCAAAAA CCTGCGAACTC ATCGGG GAGTTCGC-GA CTGTCGGGTACAGAG leuD 93779 - 93081 - | 3-isopropylmalate dehydratase small subunit leuC 95125 - 93776 - | 3-isopropylmalate dehydratase large subunit TERM 66 96242 - 96254 + G 75 -10.5 -3.76224 | CTTTTCGACGAGTTC CGCCG CCG CGGCG TTTCATACGTCAGAA Avi_9638 95783 - 96763 + | SyrP-like protein TERM 67 99207 - 99179 - g 77 -11.8 -3.53444 | gap 2, opp_overlap 99175 CCAGTGTTTGGGAAA TGTGGC-CCGC-GC TAT GCAGCGGCGCCACA CTAGTGCTTCCGCCT TERM 68 99929 - 99905 - g 78 -2.8 -5.14563 | gap 1, opp_overlap 99928, overlap 99906 TGCCGGAGCAAAAAA CGCTCA-CCGC CGGC GCGGATGAACT GCGGGCTTACCTCCG TERM 69 105563 - 105552 - g 79 -7.2 -4.63527 | CTACTATCCGAAAAA CCGG GGCA CCGG TACGCCACTGACCAC TERM 70 105843 - 105868 + G 78 -6.1 -4.58395 | gap 1, opp_overlap 105838, overlap 105844 105844 GCACATAAAACCGTG GCT-CACCGGGG GAT CTCCGGTGAAGA TTTTTAACGAGTACG TERM 71 106736 - 106716 - g 72 -5.3 -4.43309 | overlap 106720 CAAGTTGAATGAAAA GGTACGGCT TAT AACCGCTCC GGCCCACGATCTTTC Avi_9641 96775 - 108060 + | peptide synthetase Avi_9643 108053 - 115738 + | peptide synthetase Avi_9644 115923 - 116480 + | Phosphopantetheinyl transferase Avi_9645 116565 - 117056 + | hypothetical protein Avi_9646 118068 - 117454 - | hypothetical protein TERM 72 117511 - 117533 + g 78 -11.3 -3.78953 | CCAATCCTTGCGGTT CCAGACGTG TAAAC CGCGTCTGG TTTGATCATCGGCAT TERM 73 117706 - 117744 + g 88 -14.4 -3.551 | opp_overlap 117700, overlap 117676 CAGAAAATTGTGGCT GCCGCCCCGGGTGTTGGG GAA TCCGACCACCGGCGCGGC TTCTGTGAGTTCGCC trbI 119406 - 118069 - | conjugal transfer protein TERM 74 118262 - 118280 + g 71 -11 -3.22777 | overlap 118266 GTCGGATCGTTCTGC GTGACGCC GAA GGCGTTAC TGTTGCTCTCTGGCA TERM 75 118950 - 118966 + g 83 -13.7 -3.40403 | overlap 118963 118965 CCTGTGCTTGCATCG CCGCCAG CCT CTGGCGG TTCTGCTCGCGCAAC trbH 119875 - 119420 - | conjugal transfer protein trbG 120700 - 119879 - | P-type conjugative transfer protein TrbG TERM 76 120490 - 120510 + g 74 -11.1 -3.53091 | opp_overlap 120478 120479 AAAGCTGCAAGGGTG CGCAGACGA CGG TCGGCTGCG TTTCGCCAAACAGAT trbF 121384 - 120719 - | conjugal transfer protein trbL 122531 - 121425 - | P-type conjugative transfer protein TrbL TERM 77 121623 - 121571 - G 73 -11.2 -3.35798 | gap 2 AGGCCTGACCCAGAA TGCCAGCGCCGGCG--GCCTTGGCAG TAC CTGCCGCTGCGACGCCAGCGCCGACA CCCGCGACCGTCGAA TERM 78 122633 - 122652 + r 76 -10.6 -3.36273 | CGCGTGCGCTCGGCC GCGGCTGC CCGC GCCGCCGC TTCCTCTTCCGCAAG trbJ 123592 - 122804 - | P-type conjugative transfer protein TrbJ trbE 125630 - 123567 - | conjugal transfer protein TERM 79 124066 - 124080 + gr 78 -8.5 -4.18018 | ATGATAAGGCTGGGC GCGCC GGTCA GGCGC TTTTCGATGCGCCGG trbD 126308 - 126009 - | conjugal transfer protein trbC 126666 - 126301 - | conjugal transfer protein TERM 80 126613 - 126601 - G 75 -10.5 -3.72576 | overlap 126602 TCCCCCGGCAGCAAA GGCCG GTT CGGCC ATCATCATCGAGATG trbB 127646 - 126684 - | P-type conjugative transfer ATPase TrbB Avi_9665 128401 - 129123 + | two-component transcriptional regulator LuxR family Avi_9666 129203 - 129871 + | autoinducer (acylhomoserine lactone) synthase