TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.413921 %AT, 5254971 nt, 55726 terms. Intergenic: 0.481313 %AT, H2T: 669698 nt, 6694 terms; T2T: 183307 nt, 4091 terms; H2H: 276554 nt, 5102 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|222102412|ref|NC_011981.1| Agrobacterium vitis S4 plasmid pAtS4e, complete sequence (length 631775) repA 70 - 1296 + | replication protein A TERM 1 1296 - 1276 - f 79 -3.9 -5.14563 | overlap 1277 TCTCTTATCAAAAAA GCATGGGGT AGA ACCACATGA GCCGGAAGCACATCC repB 1293 - 2306 + | replication protein B TERM 2 2361 - 2330 - f 100 -10.8 -5.13722 | opp_overlap 2330 GTCAGCAAAAGAAAA GAGCTCCCCCAACG TCGC CGTCGTGGAAGCCC TTCTGTCTCTCTAGC TERM 3 2507 - 2489 - g 71 -11.6 -3.28765 | AGACTGGAAATGTAA CGACGCCC TTC GGGCGGCG GGGTATGACGCTTGC TERM 4 3220 - 3204 - g 89 -2.1 -5.66684 | overlap 3206 3207 3208 TAATTCAGAAAAAAA TAGCGCC AAT GCCGCTC AAATTGAGCGGCACA TERM 5 3218 - 3206 - g 70 -4.7 -4.46105 | overlap 3204 3207 3208 ATTCAGAAAAAAATA GCGCC AAT GCCGC TCAAATTGAGCGGCA repC 2470 - 3684 + | replication protein C Avi_7004 5256 - 4003 - | Flavin-containing monooxygenase TERM 6 4160 - 4135 - G 70 -11.9 -2.79842 | opp_overlap 4133, overlap 4132 4137 4151 AAGACCGAGGAAGTA GAGGCCTCTCT CAGA AGAGACGCCTC GATGATGTCTAGGGC TERM 7 4977 - 4987 + g 78 -3.2 -5.09895 | overlap 4970 TTCCACTGCGTATTG GTGC GTT GTAC TTTTTTGCATAGGTC Avi_7005 5807 - 7513 + | GGDEF family protein Avi_7008 9118 - 7955 - | phage integrase family protein TERM 8 8917 - 8955 + g 100 -15.2 -3.82031 | opp_overlap 8898 8917 8916 CCGCCTCCACATAAT CGCGGGCGCGGCTCGCCA GGC TGGTGAGATGCGTCGGCG TTTGGTCCTCGTTGA Avi_7013 11645 - 11193 - | transcriptional regulator mdh 12985 - 11936 - | malate dehydrogenase Avi_7015 13283 - 14869 + | ABC transporter substrate binding protein (oligopeptide) TERM 9 15288 - 15267 - g 77 -12.3 -3.53811 | gap 1 GCGACGTCCTTGAAA TCCGGCGCGG CGA CCGCGC-GGA AATGTACAATCTGTT hyuA 14987 - 17008 + | hydantoin utilization protein hyuB 17011 - 18726 + | hydantoin utilization protein TERM 10 18734 - 18764 + G 75 -9 -4.07687 | overlap 18737 18762 CATTCTGAATCTCAT GAGCCGGAAGGGAT ACG ATTTCTCCCGGTTC TTTTCGCAAAGGAAT TERM 11 18737 - 18761 + G 71 -7.1 -4.17048 | overlap 18734 TCTGAATCTCATGAG CCGGAAGGGAT ACG ATTTCTCCCGG TTCTTTTCGCAAAGG TERM 12 19066 - 19081 + G 72 -4.6 -4.57073 | overlap 19067 19068 19077 TGCTTGGCGGGGGGC TTGGCC TGGT GGCCGG TTTTTCAGGCGGCTG dppC 18723 - 19625 + | ABC transporter membrane spanning protein (dipeptide) TERM 13 19920 - 19934 + G 72 -9.2 -3.65828 | AACGCCTGCCAGCTA GCGCGG AAC TCGCGC TTTACGCCTTTCTCT dppB 19628 - 20629 + | ABC transporter membrane spanning protein (dipeptide) TERM 14 20883 - 20873 - g 71 -8.2 -4.08216 | opp_overlap 20880, overlap 20880 CCATGCTGTTTAAAA GCCG AAA CGGC GAGGTCGATCTTGTG Avi_7020 20632 - 21648 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7021 21645 - 22625 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 15 22753 - 22779 + G 77 -12.3 -3.53811 | ATGTGATTGTCGGTG GCGTCTCACCC CCACC GGGTGACACGC TTTGGGAGCAGTCGC Avi_7022 22680 - 23708 + | hypothetical protein Avi_7026 25697 - 24717 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7027 26662 - 25694 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7028 27590 - 26664 - | ABC transporter membrane spanning protein (oligopeptide) TERM 16 26755 - 26745 - G 86 -4.6 -5.2204 | GATAATGAAGAAAAA CAGC GGT GCCG CCAGTTGCCACAAGG Avi_7029 28518 - 27595 - | ABC transporter membrane spanning protein (oligopeptide) TERM 17 28563 - 28539 - R 87 -14.3 -3.01791 | opp_overlap 28531 28540 ATCGCCCCGGTAAGA GGGGCAGCACA TGG TGTGCTGCCCT TTACAGCATTATTTG TERM 18 28540 - 28562 + r 100 -17.8 -3.59649 | opp_overlap 28539, overlap 28531 TCGCCCCGGTAAGAG GGGCAGCACA TGG TGTGCTGCCC TTTACAGCATTATTT Avi_7030 30185 - 28572 - | ABC transporter substrate binding protein (oligopeptide) TERM 19 29854 - 29842 - G 76 -3.3 -4.90525 | overlap 29843 CAAGCGTAAACAAAA TCGCC TGC GGTGA CGGGCGTGCCATCGG TERM 20 30459 - 30474 + H 85 -3.2 -5.37593 | opp_overlap 30459 AGGCGTTCATATAAT CCGAAT GATT ATCCGG TTTTTTCCTTTGCGC TERM 21 31010 - 31023 + G 70 -2.3 -4.81551 | TCTTGGCTCAACCTG GTCGC ATGA GCAAC TTTTTGATCTGGGTA Avi_7032 30546 - 31193 + | transcriptional regulator TetR family Avi_7033 31376 - 31669 + | hypothetical protein TERM 22 31786 - 31825 + T 74 -7.9 -4.13767 | gap 2, overlap 31787 31792 TCGAAGCTGTCCGGG TTGGAAGGGCGCTC--CCC AAGA GGGTCGAGCGCCCTTTCGC TTTTAAACTGCCCAG TERM 23 31787 - 31824 + T 75 -11.4 -3.08046 | gap 2, overlap 31786 31792 CGAAGCTGTCCGGGT TGGAAGGGCGCTC--CCC AAGA GGGTCGAGCGCCCTTTCG CTTTTAAACTGCCCA TERM 24 31792 - 31819 + T 81 -9.9 -3.93061 | gap 2, overlap 31787 31786 CTGTCCGGGTTGGAA GGGCGCTC--CCC AAGA GGGTCGAGCGCCC TTTCGCTTTTAAACT Avi_7034 33282 - 31828 - | hypothetical cytosolic protein TERM 25 32202 - 32220 + g 79 -5.2 -4.8622 | overlap 32204 CACAAAGACCGAATG CGCGCATT GTC GATGCGAG TTTTTCATTGCGCGA TERM 26 32853 - 32869 + g 89 -3.7 -5.54907 | ATCTCTCGTGTTCGG GAAAATC GGA GAGTTTC TTTTTGTTTTCTCCA TERM 27 34184 - 34196 + G 72 -9.1 -3.87373 | TCCGAGCCGGCAGAT CCGCA AGC TGCGG TTTCTGGCCAATATC parB 33780 - 35495 + | chromosome partitioning protein TERM 28 35521 - 35544 + F 100 -17.4 -5.27335 | opp_overlap 35521 AAGGATCTGAACCAA CGCCGCTGGC TGAT GCCGGCGGCG TTTTTGTTTCCAGCA TERM 29 35544 - 35521 - f 100 -15.2 -3.36557 | opp_overlap 35521 AAGGATCTGAACCAA CGCCGCTGGC TGAT GCCGGCGGCG TTTTTGTTTCCAGCA TERM 30 35841 - 35863 + G 77 -12 -3.57387 | overlap 35844 TATGAGGAGGATTGT GAATGGGCGA AGG TCGCCCATGC TTTCCCGCATCTATT TERM 31 35844 - 35860 + G 71 -12.3 -2.91322 | overlap 35841 GAGGAGGATTGTGAA TGGGCGA AGG TCGCCCA TGCTTTCCCGCATCT Avi_7036 35577 - 36239 + | hypothetical protein TERM 32 36783 - 36734 - g 78 -14.1 -2.52464 | opp_overlap 36691 CCTCGTCGCAAGGCA GGTCCGCGTCTGTCGCAGCCCGC AAGT GCGGGCAGCACCATCCGCAAACC ATCCTCGCTCCTCCT TERM 33 37488 - 37476 - g 85 -10.5 -4.26903 | overlap 37465 CTCAGTCGACCAAAA GGCCG CAA CGGCC CAGATGGCAGCATTC Avi_7038 36664 - 37509 + | hypothetical protein Avi_7039 38432 - 37605 - | short-chain dehydrogenase protein Avi_7040 38508 - 39440 + | transcriptional regulator AraC family Avi_7041 39943 - 39527 - | hypothetical protein hupT 40491 - 40213 - | HNS-type DNA binding protein Avi_7043 40592 - 41044 + | transposase Avi_7044 41041 - 41394 + | transposase TERM 34 42563 - 42542 - g 77 -2.1 -5.03314 | overlap 42543 CCGATCTCGAAAAAA GTGCGCGCG ACAG CAAGCGCAA TGGCAGGCCGATCTC Avi_7045 41440 - 43098 + | transposase Avi_7046 43312 - 43079 - | transposase Avi_7047 43663 - 43451 - | hypothetical protein Avi_7050 44465 - 43932 - | hypothetical protein Avi_7051 45033 - 44560 - | hypothetical protein Avi_7052 46090 - 45038 - | hypothetical protein Avi_7053 47153 - 46095 - | hypothetical protein TERM 35 46209 - 46187 - G 81 -14.9 -2.65264 | CCATGACCCATAGCA CGCCGTCGA TCGCC TCGACGGCG GAGACATCGTCGATG TERM 36 46516 - 46534 + g 83 -4.5 -5.07652 | TCGGTGATTTTCTCT CCGTCAA ACCAG TAGACGG TTTTCTTTTCCCCGG Avi_7054 48556 - 47162 - | hypothetical protein TERM 37 48409 - 48435 + g 74 -13.6 -2.50443 | overlap 48408 GCCCAGTCATATGCA CTGTCGCGGCCG TGC CGGCTGCGTCGG ATTGGTAGGCTATAA Avi_7055 49623 - 48553 - | hypothetical protein vgrG 51859 - 49634 - | vgrG protein Avi_7057 52570 - 52241 - | hypothetical protein Avi_7058 52872 - 52567 - | hypothetical protein traG 55315 - 53348 - | Ti-type conjugative transfer system protein TraG traD 55547 - 55302 - | conjugal transfer protein Dtr system traC 55818 - 55522 - | conjugal transfer protein Dtr system TERM 38 55914 - 55888 - H 77 -6.7 -4.58395 | gap 1, opp_overlap 55907 55909, overlap 55893 CGGATGCTCGAAAAA TGG-AATCTGCA GATC TGCAGATCGCCA AGGGCGATGCTTTCG TERM 39 58373 - 58352 - g 93 -13.7 -3.9444 | GAAACGCCAAGGAAA CCACGCTCG ATTA CGAGCGCGG AAACCTCTACCGCGA traA 56074 - 59376 + | Ti-type conjugative transfer relaxase TraA traF 59394 - 59903 + | conjugative transfer signal peptidase TraF TERM 40 60859 - 60834 - g 88 -13.3 -3.73224 | opp_overlap 60853 TGACCTTTTACGAAA TCCGACCGTCG ATAT CGACGGCCAGA AGATCGCGCCTTTGA traB 59974 - 61059 + | conjugal transfer protein Dtr system traH 61071 - 61721 + | conjugal transfer protein Dtr system Avi_7070 62486 - 63337 + | transcriptional regulator AraC family TERM 41 64068 - 64105 + G 70 -4.9 -4.55798 | gap 1 TCGTGATCGCTCAAT TTGGTG-TCGGCAGCA TTGCGGT TGATGCCGATCCCCAA TTTTGGTTTGCAGTC Avi_7072 63440 - 64354 + | hypothetical protein TERM 42 64583 - 64613 + F 100 -16.4 -3.28001 | opp_overlap 64589, overlap 64578 64589 GCTTCCTCCGCCTTA TACGAAGAGTCATT GAA AGTGACTCTTCGTA TTCCCTTTGAAAATA TERM 43 64620 - 64662 + F 72 -7.4 -3.89346 | CTCTTCGTATTCCCT TTGAAAATATCTCAAG CCTCTGATGCA TTTGAGATATTTTCAA TTTCTCAAGTCGAGG Avi_7073 64988 - 65404 + | transcriptional regulator Avi_7074 66239 - 65523 - | transposase TERM 44 66018 - 66037 + g 75 -9.2 -3.90112 | TTTGTCGCCAAGCTT TCCGGCTG AACG CCGCCGGA TTTCATTGGCAAAGC Avi_7075 67679 - 66567 - | major facilitator family transporter Avi_7076 68790 - 67729 - | zinc-binding dehydrogenase TERM 45 69203 - 69232 + r 76 -10.7 -3.37612 | opp_overlap 69194 69208, overlap 69205 69206 69208 AGACAACTCGGGCTG AACGAGGCGTGGA CGAA TCCACGCCTCATG TTGCTTAGGCTTCGA TERM 46 69205 - 69230 + r 85 -13.3 -3.25539 | opp_overlap 69194 69208, overlap 69203 69206 69208 ACAACTCGGGCTGAA CGAGGCGTGGA CGAA TCCACGCCTCA TGTTGCTTAGGCTTC TERM 47 69206 - 69229 + r 100 -16.8 -2.54841 | opp_overlap 69194 69208, overlap 69205 69203 69208 CAACTCGGGCTGAAC GAGGCGTGGA CGAA TCCACGCCTC ATGTTGCTTAGGCTT TERM 48 69208 - 69227 + r 85 -13.6 -2.80699 | opp_overlap 69208, overlap 69206 69205 69203 ACTCGGGCTGAACGA GGCGTGGA CGAA TCCACGCC TCATGTTGCTTAGGC TERM 49 69227 - 69208 - R 85 -13.6 -2.71011 | opp_overlap 69208 69206 69205 69203 ACTCGGGCTGAACGA GGCGTGGA CGAA TCCACGCC TCATGTTGCTTAGGC menG 69911 - 69237 - | demethylmenaquinone methyltransferase TERM 50 69799 - 69777 - G 71 -10.4 -3.48276 | opp_overlap 69776 CGGGCCCGTATAGAA CGGGCGCAGC GGC GCGCCGCCCG CTGTCATACGGGACA serA 70892 - 69942 - | D-3-phosphoglycerate dehydrogenase TERM 51 70932 - 70950 + H 72 -8.8 -3.82864 | CGCCGTTGATAGGTT TGCAGCAG CTT CCGCTGCA TTGATTTTGTTCACT TERM 52 71073 - 71051 - H 100 -13.6 -4.371 | opp_overlap 71051 TGTACTAGATGAAAA GATGTTGTAC CTA GTACAACATC TTTTTGAGGGAGGTT TERM 53 71051 - 71073 + H 100 -13.6 -4.57341 | opp_overlap 71051 TGTACTAGATGAAAA GATGTTGTAC CTA GTACAACATC TTTTTGAGGGAGGTT Avi_7080 71096 - 71791 + | Transcriptional regulator Avi_7081 71843 - 72802 + | hypothetical protein TERM 54 73087 - 73101 + G 77 -10 -3.91897 | GGATTTGCGTTTGCA GCCGAA CGC TTCGGC TTTGTCGCTGCAACC Avi_7082 72799 - 73260 + | hypothetical protein TERM 55 73624 - 73600 - g 78 -11.3 -3.7795 | opp_overlap 73592 CCAAATGGCACGAAA GGGCAGGGCGG GTG CCGCCTTGGCC ATTGCAGCGCTTGGC Avi_7083 73292 - 74800 + | hypothetical protein TERM 56 74808 - 74825 + F 100 -10.5 -4.74453 | opp_overlap 74808 AAGACTGACATAAAA GGGCGCC GAGA GGTGCCC TTTTTCACTGTCTTC TERM 57 74825 - 74808 - f 85 -8.3 -4.56961 | opp_overlap 74808 AAGACTGACATAAAA GGGCGCC GAGA GGTGCCC TTTTTCACTGTCTTC TERM 58 74918 - 74939 + G 73 -12.3 -3.13565 | overlap 74908 74914 CTTTTTGCTTCGGCG GGGCATCGC TTGC GCGATGTCC TATCTCTTGATGATT Avi_7084 74891 - 76069 + | dehydrogenase Avi_7085 76820 - 76152 - | transposase ameR 77577 - 76852 - | transcriptional regulator TetR family TERM 59 77798 - 77788 - g 72 -5.4 -4.52781 | overlap 77790 77797 GAACGACAATGAAAA GCTT AAC AAGC GCGGACCGGCTGTCG Avi_7087 77781 - 79088 + | ABC transporter substrate-binding protein rbsA 79081 - 79842 + | ABC transporter nucleotide binding/ATPase protein (ribose) Avi_7089 79820 - 80524 + | ABC transporter nucleotide binding/ATPase protein Avi_7090 80521 - 81390 + | ABC transporter membrane spanning protein (urea/amide) Avi_7091 81387 - 82346 + | ABC transporter nucleotide binding/ATPase protein TERM 60 82573 - 82554 - g 100 -13.6 -4.7373 | opp_overlap 82542 GCATTGCAGGAAAAA GCCTGCCA ATTT TGGCAGGC CTGCCGATGACCATC Avi_7092 82343 - 83800 + | amidase Avi_7093 83891 - 84262 + | transposase TERM 61 84602 - 84634 + G 78 -11.3 -3.6608 | opp_overlap 84600 AAGACCCATTGAACT TTCTCGCCGCTGTCA AAT TGGCAGCAGCAAGAA TTTGGATCAGATCGT Avi_7095 84346 - 84654 + | transposase Avi_7096 84694 - 85212 + | hypothetical protein rhtB 86114 - 85515 - | RhtB family transporter TERM 62 85888 - 85876 - G 75 -5.5 -4.67968 | GCAAGAAATAACAAA TAGGC TGC GCCCA AATATTTCACGACGG Avi_7100 86688 - 86119 - | hypothetical protein TERM 63 86309 - 86319 + g 83 -4.6 -5.03314 | ACGAGGATTGTGACC GGTG GTT CGCC TTTTTTGCCCGTGGC Avi_7103 88314 - 87943 - | Transposase and inactivated derivatives IS5 family Avi_7104 88640 - 88356 - | hypothetical protein Avi_7106 88930 - 90174 + | phosphoenolpyruvate synthase-related protein TERM 64 90353 - 90326 - g 75 -12 -3.28791 | opp_overlap 90314 90313 90323 90316 ATGGGTGCGGCACAA CGCAGCACCG TTGTTTTC CGGCGCTGCG CGGTCGGCATTTATT Avi_7108 90249 - 91325 + | hypothetical protein Avi_7109 91322 - 91936 + | hypothetical protein Avi_7110 91936 - 92706 + | transferase rhtB 92703 - 93350 + | RhtB family transporter Avi_7112 93419 - 94009 + | hypothetical protein TERM 65 94315 - 94303 - T 72 -6.9 -4.16016 | opp_overlap 94303 94304 94313, overlap 94304 CCATTTGGTAACAAA CGCCC GTA GGGCA TTTTCCGATGCATTG Avi_7114 95137 - 94454 - | transposase Avi_7117 95781 - 95236 - | transposase Avi_7120 96180 - 95854 - | transposase Avi_7121 97313 - 96351 - | transcriptional regulator LysR family TERM 66 97399 - 97386 - R 70 -3.9 -4.66833 | opp_overlap 97386 CGGCAAGTCTAAAAA TTGAT CAAA ATCAA TATTGTTCAAAATAT Avi_7122 98709 - 97429 - | MFS permease TERM 67 97561 - 97541 - G 76 -7.5 -4.5115 | TAGAAAAACGCAAAA GCCGTACCG ATG CAGCACAGC ACACCATTGGTGGAT Avi_7123 99611 - 98742 - | D-N-carbamoylase TERM 68 99480 - 99469 - G 71 -7.2 -4.25256 | GTGGCAGCAAAATAA GGCG TGAG CGCC AGTTCCGGCAACACC TERM 69 99727 - 99691 - R 91 -9.5 -4.65182 | opp_overlap 99689, overlap 99723 CATAAACGAAAGAAA GAGCATTTCCGCGTTTC CGT GAAAAGTTGAAATGCTC ACTGTTGAACATGGA Avi_7125 100434 - 99745 - | hydrolase TERM 70 100570 - 100585 + H 71 -3.2 -4.84359 | TGTTTTTAGGGTCAT CTCTTG CGGG CATGAG TTTTTCTCAAGGTGC TERM 71 101595 - 101573 - g 75 -4.1 -4.8048 | gap 1, opp_overlap 101591 GCGCCAGATCAAAAA TCCGCA-GCC AACC GGCATGCTGA AGCTGATCGGCTCCT Avi_7126 100680 - 101783 + | hypothetical protein TERM 72 101839 - 101794 - T 75 -11.3 -3.08813 | gap 1, opp_overlap 101797 101798, overlap 101828 CGTGAGGTGAACAGA TGCTTAGGTTCTGTCAGGTTCA GGT TGAACCAGACAGAACCTA-GTT TTGTGTTTTCGTGTG TERM 73 101797 - 101837 + T 100 -20.7 -4.91977 | opp_overlap 101794 101828, overlap 101798 GAGGTGAACAGATGC TTAGGTTCTGTCAGGTTCA GGT TGAACCAGACAGAACCTAG TTTTGTGTTTTCGTG TERM 74 101798 - 101836 + T 100 -22 -3.53559 | opp_overlap 101794 101828, overlap 101797 AGGTGAACAGATGCT TAGGTTCTGTCAGGTTCA GGT TGAACCAGACAGAACCTA GTTTTGTGTTTTCGT TERM 75 101966 - 101993 + T 72 -10 -3.32844 | opp_overlap 101963 101962, overlap 101967 CTGCTGCATAATTTT CTCTTTAAACCG ATTC CGGTTTAAAGAA TTATGCAGTAAGCGC TERM 76 101967 - 101992 + T 81 -13.5 -2.59564 | opp_overlap 101963 101962, overlap 101966 TGCTGCATAATTTTC TCTTTAAACCG ATTC CGGTTTAAAGA ATTATGCAGTAAGCG TERM 77 102034 - 102005 - T 89 -13.6 -3.20703 | opp_overlap 102001 102005 AGAATTATGCAGTAA GCGCCGTGCC TTGCTTATGC GGCACGGCGC TTTTTTGTGGAAGAC TERM 78 102005 - 102034 + T 100 -13.6 -5.24129 | opp_overlap 102005, overlap 102001 AGAATTATGCAGTAA GCGCCGTGCC TTGCTTATGC GGCACGGCGC TTTTTTGTGGAAGAC Avi_7127 103362 - 102052 - | hypothetical protein TERM 79 103745 - 103728 - g 77 -2 -5.06414 | gap 1 CTGCGTCAACAAAAA TGCCTCA GCGCA TG-GGCA TATCGAGCGCTCCGG Avi_7128 103570 - 104073 + | flavoprotein oxidoreductase Avi_7129 104155 - 105462 + | ABC transporter substrate binding protein (spermidine/putrescine) Avi_7130 105491 - 106360 + | ABC transporter membrane spanning protein (spermidine/putrescine) Avi_7131 106364 - 107209 + | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 80 107796 - 107824 + G 75 -3.8 -4.74706 | CAAAGGTTTTGCTGC TGGATGAGCCGC TATCC GCGCTTGATCCA TTTTTACGTATTACC Avi_7132 107237 - 108310 + | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) Avi_7134 109317 - 108406 - | Integrase catalytic core TERM 81 109211 - 109225 + g 88 -10 -4.47328 | opp_overlap 109211 GTCTGCGCGGGAAAA CAGTCC ACT GGACTG TTTTCTAATCCGCTT TERM 82 109225 - 109211 - G 80 -10 -4.07568 | opp_overlap 109211 GTCTGCGCGGGAAAA CAGTCC ACT GGACTG TTTTCTAATCCGCTT Avi_7135 109688 - 109395 - | hypothetical protein Avi_7136 109978 - 109685 - | hypothetical protein TERM 83 109961 - 109979 + g 74 -6.8 -4.29738 | GGAATCATATTCGAT TTTGGCAA AGT TTGTCAAA TTTTCCTACATCTGC Avi_7140 110468 - 110992 + | AraC-like transcriptional regulator Avi_7142 111121 - 111663 + | hypothetical protein TERM 84 112080 - 112058 - T 81 -10.6 -3.68988 | overlap 112053 CTGGATCGAAGACAA CGGTCGTCAC GCT ATGACAACCG ACGATAAGAAACAAA Avi_7144 113175 - 112177 - | OmpA family protein TERM 85 113268 - 113241 - H 90 -11.4 -4.00348 | opp_overlap 113249 CCGCAAGCAAGGAAA GGCAATTAGTAC TCTT GTGCTAATTGCC CGGCCCCTATCGTCA TERM 86 113320 - 113345 + H 73 -9 -3.62224 | ACCTCAATCTGCCCG TTGCTGCGGT GGCAAG ACCGCAGCCA TTGTTCGCCAGATAT TERM 87 113391 - 113368 - H 100 -12.4 -4.72846 | opp_overlap 113368 CCAGATATCGAAAAA GGCCGGAGGA ACGG TCGTCCGGCC TTCTCTTTCAGTTTC TERM 88 113368 - 113391 + H 93 -12.4 -3.87979 | opp_overlap 113368 CCAGATATCGAAAAA GGCCGGAGGA ACGG TCGTCCGGCC TTCTCTTTCAGTTTC TERM 89 114260 - 114284 + H 100 -2 -5.88565 | gap 1 GACGAAGATAAGGAA GGTCGGGTGCG ATTT CGC-TGCGGCC TTTTTTTGTTGTCGA Avi_7146 114361 - 114690 + | Restriction endonuclease Avi_7148 115490 - 114792 - | transposase TERM 90 115871 - 115911 + H 70 -10.6 -2.76911 | gap 1, overlap 115871 115901 CATACTGATTACCTA TTG-GTCCTCGGGAGTTTA ATTT TAAATTCCCGAGGACGCCG ATTCCTTGTTTAAAT TERM 91 115871 - 115912 + H 73 -9 -3.63326 | gap 2, overlap 115871 115901 CATACTGATTACCTA TTGG--TCCTCGGGAGTTTA ATTT TAAATTCCCGAGGACGCCGA TTCCTTGTTTAAATT TERM 92 116419 - 116435 + G 88 -5.2 -5.24129 | overlap 116409 TGCAACGGCTGTGTT TTGACA TCGGC TGTCAA TTTTTTCTCAAGACC virH2 115974 - 117344 + | P-450 monooxygenase Avi_7150 117341 - 118090 + | methyltransferase TERM 93 118479 - 118505 + G 78 -6.4 -4.56775 | overlap 118481 118495 AAAGGGATGTTGTTG GGCGATGATGGC CTT GCCCTCAGCGAC TTTTTGCGCAGGGAT Avi_7151 118131 - 118826 + | hypothetical protein Avi_7152 118848 - 119786 + | sulfotransferase Avi_7153 120803 - 119889 - | hypothetical protein TERM 94 120777 - 120761 - G 75 -9.4 -3.85698 | CTTTCGCTTGAGAAA CGTCGC GCGTT GCGACG GGCAGACTGCCAGAT Avi_7154 121797 - 121123 - | transposase TERM 95 123335 - 123347 + G 80 -10.5 -4.07877 | GTGGGGCGGGATTGG CGGCC TTG GGCCG TTGTTTGTGGGATCA Avi_7155 122247 - 123653 + | nitrilotriacetate monooxygenase TERM 96 123730 - 123707 - f 72 -6.7 -4.28254 | gap 1 GGCCAATATGCAAAA CGCCAC-GCC GATCG AGCTGTGGCG AAGGACTTTGTTTGT TERM 97 123911 - 123926 + G 74 -8.2 -4.24948 | overlap 123924 ATTGGTCCCAATGGT GCGGGC AAAA GCTCGC TTTTGAATATCCTCA Avi_7156 123779 - 124573 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) Avi_7157 124570 - 125451 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 98 126464 - 126491 + G 75 -12 -3.28122 | gap 1, overlap 126461 126460 126465 CGCGCCTGCTCGGTT TG-CGGCGTGCGC ATG GCGCACGTCGGCG TCTCTTTCCCTCCTA TERM 99 126465 - 126490 + G 74 -13.3 -2.56391 | gap 1, overlap 126464 126461 126460 GCGCCTGCTCGGTTT G-CGGCGTGCGC ATG GCGCACGTCGGC GTCTCTTTCCCTCCT Avi_7158 125455 - 126507 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 100 126887 - 126876 - g 70 -3.6 -4.56597 | GCCCTGCTGGAAAAA GCCG CAGC CGAC AAGATTCCGCTGATT Avi_7159 126525 - 127853 + | hypothetical protein TERM 101 127865 - 127891 + F 91 -11.5 -4.07568 | gap 1, overlap 127866 TTGATCCATTGAGAT CGGGCGCGCGCG GTAT CGC-CGCGCCCA TTTTGGGAACACAGG TERM 102 127866 - 127890 + F 93 -15 -3.04398 | gap 1, overlap 127865 TGATCCATTGAGATC GGGCGCGCGCG GTAT CGC-CGCGCCC ATTTTGGGAACACAG TERM 103 127940 - 127962 + G 83 -7.6 -4.66537 | opp_overlap 127940 127939 ATATTTTTGCGAAAT GCCCTTGCTG TCG CAGCATCGGC TTTTGTCTTCGCAAG Avi_7160 127916 - 129265 + | hypothetical protein TERM 104 129277 - 129300 + F 100 -16 -4.72486 | CTGATGGGTCATGCA CCGGAGCGGC CCCC GCTGCTCCGG TTTTTGGCGTTTGTC Avi_7161 129417 - 130217 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) Avi_7162 130257 - 131483 + | thermophilic desulfurizing enzyme TERM 105 131920 - 131937 + G 74 -11.3 -3.59698 | overlap 131904 GCTGCGACATCGCGT GGCCTTG ATGT CAAGGCC TTCTATCTGGCATCG tauA 131638 - 132648 + | taurine ABC transporter periplasmic binding protein TERM 106 132667 - 132697 + F 100 -14.1 -4.56597 | gap 1, overlap 132669 ATTGTTAGAGGCTTT C-ATCCCGCTGGCA CGAT TGCCGGCGGGATTG TTTTTGAAAGAGAAC TERM 107 132669 - 132694 + F 100 -16.9 -4.40561 | overlap 132667 TGTTAGAGGCTTTCA TCCCGCTGGCA CGAT TGCCGGCGGGA TTGTTTTTGAAAGAG Avi_7165 132716 - 133507 + | ABC transporter nucleotide binding/ATPase protein Avi_7166 133570 - 134355 + | taurine uptake ABC transporter permease protein TERM 108 134418 - 134384 - T 100 -10.1 -4.84017 | opp_overlap 134383 134381 134384 134386 AACGCTCTATAAAAA CATCACGAAGTCC TGTTGAGAT GGCCTTCGTGATG GTCTTGCTGTGAGCA ssuD 135508 - 134438 - | sulfonate monooxygenase TERM 109 135315 - 135291 - G 71 -6.9 -4.11751 | opp_overlap 135293 ATCAAGGCTTCAAAA CTGCGCGTGCG TGT CGCCAGCGCTG TTGCGACGGTGAATG Avi_7168 136652 - 135594 - | hypothetical protein Avi_7169 137269 - 136667 - | hypothetical protein TERM 110 137124 - 137111 - G 72 -9.5 -3.71649 | opp_overlap 137110, overlap 137109 CAGAAGAGAGAAATA GGGCG ATTT CGCCC GTGCCTTGTCCACCA Avi_7170 137860 - 137282 - | hypothetical protein TERM 111 137361 - 137344 - G 70 -4.9 -4.49958 | gap 1, overlap 137347 AGGCGAGGAAAGAAA TCA-GCTG CGA CAGCGTGA CAATGCCGGTGGTGC Avi_7171 138939 - 137893 - | monooxygenase Avi_7172 140579 - 138936 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 112 139490 - 139513 + g 72 -5.2 -4.5442 | gap 1, opp_overlap 139481 139484 139485, overlap 139491 GATAGACAAGCTGCA CCTTGCGC-CG GAA CGCGCGCAGGC TTTTGTGGTTCAGGC dppC 141454 - 140576 - | ABC transporter membrane spanning protein (dipeptide) TERM 113 141122 - 141103 - G 72 -5 -4.56597 | gap 1, overlap 141104 141112 TGGCTCCGGCAAAAA GGCCAAGCA GGG TGCCTG-CC ACCAGTCCCACGCCC TERM 114 141229 - 141244 + g 77 -11.8 -3.59979 | opp_overlap 141228 141226 141229 CCGTGCCGAGAAGAT GCGCCG CTGA CGGCGC TTTCAACTGCCCGCC dppB 142395 - 141451 - | ABC transporter membrane spanning protein (dipeptide) TERM 115 141953 - 141927 - G 75 -5.8 -4.61566 | GCCGAAACGAGAAAA TCTGGATCAGCA TAA TGCCCAGCCAGA ACACTGGAACCGAGA TERM 116 142447 - 142420 - R 95 -12.6 -4.16943 | CCGCAGATTTCAAAA CCGGGTGGCGGC TGTT GCTGTCACCCGG GTGCTGACCATTACT Avi_7175 144089 - 142458 - | ABC transporter substrate binding protein (oligopeptide) TERM 117 142722 - 142734 + g 72 -4.7 -4.63928 | overlap 142716 142716 ACCACCCTTCTGACG CAGCG CGT CGCGG TTTTTCGGGTAATAT TERM 118 143474 - 143509 + g 72 -6 -4.26903 | gap 1, opp_overlap 143456, overlap 143476 GCGATTTGCCAAGCG TC-TCGGCGCTGACCAC AAA GGGGCCGGAGCCGATGA TTTTGGTGGCATCGC TERM 119 144459 - 144417 - R 100 -13.4 -4.9645 | ACGACAACAAGAAAA GCGAGAGTCTGTCTGGTTCA ATC TGAACCTGGCATACTCGCGC AAGGAACCGATATTT acd 145972 - 144788 - | acyl-CoA dehydrogenase Avi_7180 147003 - 145969 - | desulfurizing enzyme Avi_7181 148698 - 147070 - | ABC transporter substrate binding protein (oligopeptide) TERM 120 147231 - 147241 + g 83 -8.2 -4.62783 | overlap 147230 GGATTTCCTTCCACT GCGC CAC GCGC TTTTTCGGATCAATC TERM 121 147529 - 147515 - G 78 -11.4 -3.71284 | GCTTGACGAATATAA TCCGCG CCA CGCGGA TAGCCTTCACCCGGT Avi_7182 148964 - 149953 + | ABC transporter membrane spanning protein (oligopeptide) Avi_7183 149950 - 150957 + | ABC transporter membrane spanning protein (oligopeptide) Avi_7185 150954 - 151952 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_7187 151930 - 152871 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 122 153493 - 153517 + G 78 -9.9 -4.07687 | overlap 153494 GGGCTTGGTGTTGTG TCCTACTCGCC GCT GGCGCGTGGGG TTTTGACGGGCAAAT Avi_7188 152887 - 153936 + | aldo/keto reductase TERM 123 153945 - 153983 + F 77 -12.5 -2.74784 | gap 1, overlap 153940 153940 TGCCTGATCATGGAT GT-GGCAGCCGGGGTG AAGATGAA CACTCCGGCTGCCTGC TCAGTTTTGAAGGAT acd 153997 - 155235 + | acyl-CoA dehydrogenase TERM 124 155279 - 155237 - T 74 -9.9 -3.53012 | gap 1, opp_overlap 155237 155244, overlap 155238 GCCGGGTGTTCTAAA GTTTGATGCCTGTCTGGTGG AGAG CCACCAGACAGGCTTTAT-C AGGGCTTTACTTCAA TERM 125 155244 - 155273 + T 100 -22.3 -3.88583 | opp_overlap 155237 155238, overlap 155237 GTTCTAAAGTTTGAT GCCTGTCTGGTGG AGAG CCACCAGACAGGC TTTATCAGGGCTTTA Avi_7190 156047 - 155286 - | Nitroreductase TERM 126 156071 - 156050 - R 70 -7.3 -4.07687 | gap 1 AGCTGGGTGGCAAAA CACT-TGGCG GGA CGCCATAGCG GGCTTTGATGCGTTC Avi_7191 157852 - 156158 - | ABC transporter nucleotide binding/ATPase protein TERM 127 156966 - 156947 - G 72 -4.8 -4.56775 | overlap 156948 ATTTTTGCTGAAAAA CGGCAGGC CACC GCCACCCG GCAGGGCAAAATCGC TERM 128 157438 - 157485 + g 100 -19.2 -3.66646 | gap 1 GCAACAGGTCTATCG CCCTTTGCCG-CGCCTGCCCCTG ATC CAGCGGCAGGTGGCGGCGAATGG TTTCAATCAGCTGTT Avi_7192 158775 - 157849 - | ABC transporter membrane spanning protein (oligopeptide) Avi_7193 159760 - 158780 - | ABC transporter membrane spanning protein (oligopeptide) Avi_7194 161453 - 159867 - | ABC transporter substrate binding protein (oligopeptide) TERM 129 161698 - 161687 - R 77 -7.2 -4.58395 | opp_overlap 161694, overlap 161689 CGCACCTGGGAAAAA CCGG TTTT CCGG GCGCGGCAAGCCCAG Avi_7195 163000 - 161669 - | monooxygenase Avi_7196 163828 - 163043 - | sulfate ester transporter permease protein TERM 130 163842 - 163864 + r 70 -6.2 -4.18018 | ATGATCACGCCTCCT CCTGCTTCCA GCG TTGCAGCAGG TTTTCGGTGCGCCGC Avi_7197 164649 - 163831 - | ABC transporter membrane spanning protein (aliphatic sulphonate) Avi_7198 165746 - 164673 - | ABC transporter substrate binding protein (aliphatic sulfonate) ssuB 166649 - 165813 - | ABC transporter nucleotide binding/ATPase protein (nitrate/sulfonates) TERM 131 166661 - 166679 + r 83 -10.3 -4.08221 | opp_overlap 166660, overlap 166651 TCATGGATGGAATAT CTCCCTC GTTTG GAGGGAG TTTAGTTATATTCGA TERM 132 166733 - 166765 + r 100 -16.5 -3.15999 | opp_overlap 166731 166760 TAATTGTCGAACAGT TGTCGGATTTTCGTT TTT ACCGAAAATCCGACA TTGGCTGTGTCAGCC Avi_7200 168115 - 166775 - | nitrilotriacetate monooxygenase Avi_7201 169769 - 168138 - | ABC transporter nucleotide binding/ATPase protein (peptide) TERM 133 169499 - 169523 + g 70 -4.1 -4.56597 | opp_overlap 169487 169491 169472, overlap 169502 GCACAAAGCCCACCT TTGTGCCGCGC AAA GCGCGCCATTG TTTTTCACCAAAACC TERM 134 169502 - 169520 + g 85 -10.2 -4.40561 | opp_overlap 169491 169472, overlap 169499 CAAAGCCCACCTTTG TGCCGCGC AAA GCGCGCCA TTGTTTTTCACCAAA dppC 170638 - 169766 - | ABC transporter membrane spanning protein (dipeptide) Avi_7203 171681 - 170635 - | ABC transporter membrane spanning protein (dipeptide) Avi_7206 176063 - 175062 - | hypothetical protein TERM 135 175658 - 175674 + g 72 -4.4 -4.57569 | gap 1, overlap 175661 CCAGCTCTTCCAGTT GCGCCTC AAAC GAGG-GC TTTTTGGCCGGATCG Avi_7207 176317 - 176943 + | acetyltransferase Avi_7208 177000 - 178025 + | monooxygenase TERM 136 178182 - 178208 + G 71 -10.8 -3.53012 | opp_overlap 178205, overlap 178173 CGCCTCGATGGCGCA GCCAGCTTCCTG ACG CTGGAAGATGGC TTTGCCCGCGCCGAC Avi_7209 178062 - 179063 + | hypothetical protein TERM 137 180031 - 180012 - g 75 -4.2 -4.85129 | overlap 180013 ACGACAGACGAAAAA CTGGCACA GGGG CGCGCCAA CAATCTGGATGCAAA Avi_7210 179082 - 180416 + | monooxygenase TERM 138 181104 - 181076 - T 71 -11.1 -2.90798 | gap 1, opp_overlap 181076 181069, overlap 181071 181068 GGATAAACGAGGACA GCGCCACGAACC TTGAAT GGTTC-TGGCGC TGTAATGCTATTTGA TERM 139 181076 - 181104 + T 71 -11.1 -2.8789 | gap 1, opp_overlap 181071 181068 181076, overlap 181069 GGATAAACGAGGACA GCGCCACGAACC TTGAAT GGTTC-TGGCGC TGTAATGCTATTTGA TERM 140 181177 - 181156 - T 100 -13 -5.43866 | opp_overlap 181152 TAATGGGCAAAAAAA CAGGCCCC TTTGTC GGGGCCTG CTCAATGTTTAGCTG Avi_7212 182781 - 181186 - | ABC transporter substrate binding protein (oligopeptide) TERM 141 182331 - 182363 + g 71 -10.5 -3.55444 | opp_overlap 182325 GCTTGGAAAGGATGA GCTTTGCCACCAGCG GAT CGCTGGTATCAATGC TTTCCACGGTGGCAA TERM 142 182405 - 182382 - G 78 -6.6 -4.57569 | opp_overlap 182384, overlap 182384 CCACGGTGGCAAAAA TAGCCCGTCC CCGC GGATGGGCTT CCTTGAGGCGGAAAA TERM 143 182403 - 182384 - G 75 -9.2 -3.90316 | opp_overlap 182384, overlap 182382 ACGGTGGCAAAAATA GCCCGTCC CCGC GGATGGGC TTCCTTGAGGCGGAA TERM 144 182384 - 182403 + g 73 -11.4 -3.33696 | opp_overlap 182384 182382 ACGGTGGCAAAAATA GCCCGTCC CCGC GGATGGGC TTCCTTGAGGCGGAA TERM 145 182440 - 182428 - G 76 -6.9 -4.4267 | overlap 182430 GCGGAAAATCGAAAA GGCGA CAT CCGCC GATGTCAACGGCTTG TERM 146 182687 - 182661 - G 83 -8 -4.64861 | opp_overlap 182660 182677 GCTCGGGAAAATAAA CAATCTTCAGCG TTC CGCCGGAAATTG GCTCTTCTGCGGCGG Avi_7213 183137 - 182799 - | hypothetical protein Avi_7214 184789 - 183191 - | ABC transporter substrate binding protein (oligopeptide) TERM 147 183705 - 183687 - G 72 -8.8 -3.92075 | opp_overlap 183691, overlap 183688 AGCCGCAGGGAGAAA CGGATGCC ATT GGCATCCT TCGGATGTCCGGCCT TERM 148 183704 - 183688 - G 71 -12.3 -2.94924 | opp_overlap 183691, overlap 183687 GCCGCAGGGAGAAAC GGATGCC ATT GGCATCC TTCGGATGTCCGGCC TERM 149 184670 - 184684 + g 80 -9.2 -4.17556 | opp_overlap 184670 GCCCACGGCCACAAA GGTGGC AAT GCCGCC TTTCTTCGAGGTGTC Avi_7215 186025 - 184832 - | hippurate hydrolase TERM 150 184883 - 184871 - G 71 -6.9 -4.10161 | CACCAGCCGGGAAAA CAGGG TTG CCCCG ACGGGCAGAATGGCA TERM 151 184973 - 184961 - G 72 -4.7 -4.59773 | opp_overlap 184961, overlap 184962 GCCGAGGGTGAAAAA CGCAC CGG GGGCG TGCTTGAGCAAGTCG Avi_7216 187280 - 186111 - | monooxygenase TERM 152 186159 - 186149 - G 71 -6.8 -4.14472 | TCAACAGCGGCAAAA TGCG TTC CGCA AAATAATCGAGATCG TERM 153 187599 - 187586 - H 72 -8.1 -3.90766 | overlap 187581 TATTGAGAAATATAA CTCCC AATT GGGAG CCATGGGGCGATCAA TERM 154 188173 - 188163 - g 75 -5.4 -4.59773 | TCTGATCTTGAAAAA GCAA GGC TTGC TGGAAAAGGAATTTG Avi_7220 188026 - 188994 + | ABC transporter substrate binding protein (aliphatic sulfonate) Avi_7221 189020 - 189868 + | ABC transporter membrane spanning protein (nitrate/sulfonates) Avi_7222 189868 - 190605 + | ABC transporter nucleotide binding/ATPase protein nocT 190715 - 191488 + | ABC transporter substrate binding protein (nopaline) TERM 155 191536 - 191573 + F 100 -13.3 -4.08394 | opp_overlap 191541, overlap 191539 191541 191568 GCCCTATATTCACGT GAAGAGCGCCCGGCGGG ATTG TCTGCCGGGCGCATCTC TTTTGAGGAAGATGT TERM 156 191539 - 191571 + F 100 -15.6 -3.63922 | gap 1, opp_overlap 191541, overlap 191536 191541 191568 CTATATTCACGTGAA GA-GCGCCCGGCGGG ATTG TCTGCCGGGCGCATC TCTTTTGAGGAAGAT TERM 157 191568 - 191541 - f 95 -15.5 -3.06671 | opp_overlap 191539 191536 191541 ATATTCACGTGAAGA GCGCCCGGCGG GATTGT CTGCCGGGCGC ATCTCTTTTGAGGAA TERM 158 191541 - 191568 + F 100 -18.4 -2.63623 | opp_overlap 191541, overlap 191539 191536 ATATTCACGTGAAGA GCGCCCGGCGGG ATTG TCTGCCGGGCGC ATCTCTTTTGAGGAA TERM 159 191747 - 191761 + G 75 -4.2 -4.80455 | GGAGCGAAACCGGTG GCGG CGATTGC CCGC TTTTATGTTTGGGTC Avi_7225 191612 - 192271 + | ABC transporter membrane spanning protein (amino acid) TERM 160 192635 - 192622 - g 100 -9.5 -4.98531 | TGGCCAAAGGAAAAA GCGCG TCAG CGCGC CATTGAGCTGCTGAA TERM 161 192740 - 192754 + G 70 -2.1 -4.84311 | gap 1 TTGCCAGAGCCTTAG CAC-CG TCGC CGCGTG TTTTATTGTGTGACG nocP 192268 - 193029 + | ABC transporter nucleotide binding/ATPase protein (nopaline) TERM 162 193208 - 193176 - f 80 -11.5 -3.4052 | opp_overlap 193186, overlap 193186 GCCGAATTCAATTAA TCCACAAAAACAATA GAT TATTGTTCTTGAGGA ATGAAATTGTGCAAA TERM 163 193198 - 193186 - f 79 -4.9 -4.92314 | opp_overlap 193186, overlap 193176 ATTAATCCACAAAAA CAATA GAT TATTG TTCTTGAGGAATGAA Avi_7228 193369 - 194169 + | outer membrane lipoprotein TERM 164 194190 - 194229 + F 70 -10.6 -2.77222 | gap 1, overlap 194189 GAAAAGGCGTTTTAG TGGTG-AGGCGGCGAGGCT TTT GGCTCCGCCGCCTTCGCCC GTTTGGAGTGATAGT Avi_7230 194247 - 195314 + | ABC transporter nucleotide binding/ATPase protein Avi_7231 195319 - 195960 + | ABC transporter membrane spanning protein Avi_7233 196120 - 196920 + | outer membrane lipoprotein Avi_7234 196911 - 198065 + | ABC transporter nucleotide binding/ATPase protein TERM 165 198341 - 198351 + G 74 -2.4 -5.01732 | overlap 198323 198322 TGCCACTGTCGATCA GTGC CAC GCCC TTTTTTGCCCGCATT Avi_7235 198046 - 198699 + | ABC transporter membrane spanning protein TERM 166 199006 - 199032 + F 100 -8.7 -5.41746 | gap 1, overlap 199008 TAACCTTCACACTTC AAGGGCC-TCGG TTTT CCGATGGCCCTA TTTTTTTGACGCCTT TERM 167 199008 - 199030 + F 95 -11.3 -4.34482 | gap 1, overlap 199006 ACCTTCACACTTCAA GGGCC-TCGG TTTT CCGATGGCCC TATTTTTTTGACGCC TERM 168 199215 - 199234 + F 100 -10.6 -4.98531 | GCTTACCGAATTCTA GCGGTCCG CATG CGGTCCGC TTTTTCGTTTCACGG Avi_7237 199739 - 200020 + | transposase Avi_7238 200266 - 200940 + | transcriptional regulator GntR family TERM 169 201044 - 201021 - f 74 -2.4 -5.03747 | overlap 201024 201033 AAACGGCTCAAAAAA GAGGAAAAGT CATG ACGTTTCGTC GCATGGCCGCGTTGG nocT 201032 - 201883 + | ABC transporter substrate binding protein (nopaline) nocQ 201900 - 202670 + | ABC transporter membrane spanning protein (nopaline) nocM 202667 - 203359 + | ABC transporter membrane spanning protein (nopaline) ggt 203401 - 204996 + | gamma-glutamyltransferase Avi_7245 205568 - 205215 - | phospholipase/Carboxylesterase family protein Avi_7246 206186 - 205803 - | hypothetical protein Avi_7250 208208 - 207210 - | transcriptional regulator AraC family Avi_7251 209260 - 208262 - | hypothetical protein TERM 170 209048 - 209029 - G 77 -7.8 -4.26076 | overlap 209030 209041 TGACCTCGATGAAAA TGACTGCG AAAT CGCAGTCG TCGCGGTAGGCCGGA TERM 171 209224 - 209175 - G 71 -10.7 -3.57792 | gap 1, opp_overlap 209175 TCAGCGATTGGCAAA TGCGGCAGAAGCGGTCCGCCCC CGGCAAC GAGGCGGACAGGAT-TGCCGCA TGTATGGCTGTCGAT Avi_7252 210137 - 209280 - | ABC transporter membrane spanning protein Avi_7253 210982 - 210134 - | ABC transporter Avi_7254 212084 - 210993 - | ABC transporter nucleotide binding/ATPase protein TERM 172 211086 - 211061 - G 82 -13.3 -3.28712 | CGCGCGTGGTGACAA TGCCGATGACG TTGC CGTCCTCGGCA ATGGCCACGGCATCG TERM 173 212098 - 212115 + r 70 -6.9 -4.02581 | overlap 212099 ATCGCGTTCCCCGCG CGCCGGT ATTG ACCGGCA TTCTCTTTTGTGGAC TERM 174 212136 - 212167 + r 72 -8.5 -3.75686 | TTTTGTGGACGTCAG GGCCGGGCCGCCG CCATCA CGAAAGCCCGGCC TTCTCATTTTATTCA Avi_7255 213027 - 212176 - | ABC transporter substrate binding protein (glycine-betaine) TERM 175 212622 - 212641 + g 72 -5.6 -4.42639 | overlap 212626 CGATGCCGATGATCT TGCCGCCG AACT TGTCGGCA TTTTCGTTCAACTGT Avi_7256 214452 - 213106 - | oxidoreductase dhaL 215966 - 214449 - | aldehyde dehydrogenase TERM 176 214865 - 214879 + g 78 -8.6 -4.15565 | opp_overlap 214865 CCCCGCCATGGACAA CAGAGA GCT TCTCTG TTTTCGCATCATCGA dapA 216870 - 215959 - | dihydrodipicolinate synthase TERM 177 216238 - 216222 - G 75 -9.4 -3.86897 | CGCAGGCTTCATAAA GCGCGA CATGC TCGCGC GGCAGGAAGTTCGAG TERM 178 216259 - 216269 + g 70 -2.4 -4.72272 | GAAGTTCGAGCCAGC GCAG ACC CAGC TTTTTGCTCCCCAGG Avi_7259 217577 - 216867 - | transcriptional regulator GntR family TERM 179 217038 - 216992 - G 83 -13.6 -3.33798 | opp_overlap 216992 217035 CAAACACGAGATCAA CGACGGCATCTTCGTCACGCGC GCT GATCGCGGCGATAATGCCGTCG TGGTGTCCGACTGAT TERM 180 218092 - 218115 + G 88 -11 -4.11371 | GCGAGAAATATGGAC TGTCTCGCAC ACCT GTGCGTGACA TTTTCCGCCGTCTTG Avi_7262 217980 - 218669 + | transcriptional regulator GntR family Avi_7263 219026 - 218712 - | transposase Avi_7264 219073 - 219225 + | truncated Tnp Avi_7265 220255 - 219320 - | Ethanolamine kinase Avi_7266 221236 - 220271 - | aminoglycoside phosphotransferase TERM 181 220672 - 220656 - G 70 -2.2 -4.82901 | overlap 220660 TGGGCCGCACAAAAA TCAACG CCAGC CGCCGA AATGGCGGAGTAGAG amaB 222468 - 221233 - | N-carbamoyl-beta-alanine amidohydrolase TERM 182 222206 - 222192 - G 88 -11.4 -4.11692 | CACGCACCGCCAAAA CGGCCT CGC AGGCCG CAACGACGCCCAGTG Avi_7268 223282 - 222521 - | transcriptional regulator DeoR family TERM 183 223030 - 223045 + g 72 -4.6 -4.56775 | overlap 223031 CCATGGAGGCCGCAG CCTCGC CGAT GCGAGC TTTTTCCCGGGCGCT moaD 225182 - 223338 - | ABC transporter nucleotide binding/ATPase protein TERM 184 223588 - 223601 + g 78 -8.1 -4.53303 | TCCAGCGTTGGCATG GCGCT GAGC AGCGC TTTTGTGTAGGGATG TERM 185 224578 - 224558 - G 84 -4 -5.20222 | gap 1 AGGAAACAAACAAAA CGGCCGTAT CGAA AT-CAGCCG TCAGCTCTTTCATCA dppC 226102 - 225182 - | ABC transporter membrane spanning protein (dipeptide) Avi_7271 227079 - 226099 - | ABC transporter membrane spanning protein (oligopeptide) TERM 186 227108 - 227142 + r 72 -10.6 -3.09327 | GCTTCGGTCCTGATG GTCGCCGCACGCTGAA ATC TCCGGCGTGCGGCCAG TCTTACGTCCGGTGC Avi_7272 228748 - 227162 - | ABC-type dipeptide transport system, periplasmic component TERM 187 227689 - 227699 + g 76 -6.8 -4.44245 | overlap 227682 227681 CAGCTTCCGCCAGCA GTGC CTG GCAC TTTTCTGGATCGTAT Avi_7273 229181 - 230149 + | DNA topoisomerase TERM 188 233112 - 233124 + G 75 -9.1 -3.96148 | TAGCGTCGCGTTTTC TGGCG GCA CGCCA TTTGTCGTCGAAGGC Avi_7274 230317 - 233289 + | hypothetical protein Avi_7275 233913 - 233401 - | hypothetical protein TERM 189 234362 - 234372 + G 74 -8.2 -4.25104 | opp_overlap 234356 234357, overlap 234361 GGACGAACATGCGTT GCGC GAC GCGC TTTTGCTGACGGCGC Avi_7276 234111 - 235064 + | hypothetical protein Avi_7277 235067 - 235753 + | hypothetical protein Avi_7278 236444 - 235794 - | Transcriptional regulator Avi_7279 236582 - 238144 + | hypothetical protein TERM 190 238449 - 238475 + G 71 -8.1 -4.07568 | gap 2, overlap 238453 238454 AGCCGCGAGGCGATC GACAGCGCGAAGG CAT CCTTC-CGC-GTC TTTTCCCGCAAGGGG Avi_7280 238155 - 238655 + | Electron transport protein SCO1/SenC Avi_7281 239090 - 239491 + | hypothetical protein Avi_7282 239488 - 240621 + | HlyD family secretion protein TERM 191 242560 - 242532 - g 70 -3.9 -4.58685 | gap 1 AAAGCTTTGGAAAAA GTGCCCGGTCTC CGCCTT GAAAC-AGGCAC TGGCGGGAATGGCAC TERM 192 243099 - 243089 - g 83 -5.4 -4.91712 | GCCAAGCTATAAAAA CTTG CCA CAAG GGGTAAAATTTGTCG Avi_7283 240618 - 243674 + | Acr family transporter fecR 244750 - 243791 - | two component sensor kinase TERM 193 244042 - 244062 + g 72 -6.7 -4.2717 | overlap 244037 244035 GAGCGACGAGGCCGT CGACCGGCG TCA CGGCTGTCG TTTTCCTGGCGTAGT TERM 194 244699 - 244709 + g 71 -8.2 -4.07678 | GCAAAAGCCAGTCGG CCGC CTC GCGG TTTCGTCTTTTCCGA TERM 195 245091 - 245034 - R 70 -4.1 -4.68919 | gap 1, overlap 245043 245046 AAAGACAAACGAAAA CGAAAGAAACGAGAGTCAGTCTGGTTCA ATT TGAACCTGACTGACTCTAGAGAAT-CCG GTCAAGGCAATGGGC TERM 196 245083 - 245043 - R 100 -19.9 -4.67692 | overlap 245034 245046 CGAAAACGAAAGAAA CGAGAGTCAGTCTGGTTCA ATT TGAACCTGACTGACTCTAG AGAATCCGGTCAAGG TERM 197 245080 - 245046 - R 100 -20.2 -3.23149 | overlap 245043 245034 AAACGAAAGAAACGA GAGTCAGTCTGGTTCA ATT TGAACCTGACTGACTC TAGAGAATCCGGTCA Avi_7286 245622 - 245080 - | sigma factor fecE 246710 - 245916 - | ABC transporter nucleotide binding/ATPase protein (iron (III) dicitrate) fecD 247683 - 246700 - | ABC transporter TERM 198 247310 - 247299 - G 70 -3.6 -4.62336 | overlap 247301 AGGCGAGTGCAAAAA CGGC AAGG GCCA TGGCGCTGGCACCCA fecC 248708 - 247680 - | ABC transporter membrane spanning protein (iron(III) dicitrate) fecB 249640 - 248705 - | ABC transporter membrane spanning protein (iron(III) dicitrate) TERM 199 249256 - 249244 - G 78 -9.1 -4.10657 | opp_overlap 249242 CCATATGCTTGAAAA GCACC GTT GGTGC AATCTTGGCAGCCTG TERM 200 249691 - 249662 - R 100 -16.4 -4.35524 | overlap 249663 GCCGGAAATCGAAAA CGGCTGCGGGGG TAATGC CCCCCGCAGCCC GAGATAATCAGAACT TERM 201 249690 - 249663 - R 100 -19.9 -3.20832 | overlap 249662 CCGGAAATCGAAAAC GGCTGCGGGGG TAATGC CCCCCGCAGCC CGAGATAATCAGAAC Avi_7293 252206 - 249699 - | TonB-dependent receptor Avi_7294 253181 - 252303 - | hypothetical protein grsT 254032 - 253238 - | thioesterase mcyB 255603 - 254029 - | microcystin synthetase B Avi_7298 263449 - 255728 - | peptide synthetase TERM 202 258062 - 258084 + g 73 -3.3 -4.77896 | overlap 258076 AAGGCTCGGTGGCAG CGGTTCGCC CGCAA GGCAGACTG TTTTTGCCTTGGTTG TERM 203 258232 - 258214 - G 72 -6 -4.3129 | overlap 258216 CATCGACGATGAAAA TTCGCC CACCAGC GGCGAA CGTCACGAAAATTTC TERM 204 262424 - 262409 - G 86 -6 -4.94972 | overlap 262411 GAGCAGAACCAAAAA GGCCGG ATCG CCGGAC AGGTCGTTGCGAAAG Avi_7299 267846 - 263446 - | polyketide synthetase TERM 205 263709 - 263698 - G 74 -7.2 -4.4009 | GCCGAGTTCATAAAA GCCG TCAT CGGC CCCGATGGGTGACAG TERM 206 265194 - 265208 + g 82 -10 -4.18506 | AGAGGCCGGGGCCTT CAGCAG GTG CTGCTG TTCTTTTGGGCGTGG TERM 207 266697 - 266710 + g 75 -5.2 -4.56597 | overlap 266696 266695 CATAGTGGAGGCTTG CCGG AATCCG CCGG TTTTTCAGGGCCAGC Avi_7300 268440 - 267880 - | hypothetical protein Avi_7301 269015 - 268437 - | hypothetical protein mcyE 270652 - 269252 - | polyketide synthase and peptide synthetase Avi_7304 271539 - 270649 - | hypothetical protein Avi_7306 276040 - 271520 - | peptide synthetase TERM 208 272008 - 272026 + g 74 -8.1 -4.16842 | opp_overlap 271997 GATAGCCCTGCATGA GCCGGCA CAGGA TGTCGGC TTTGTTGAAAGTGCC TERM 209 272267 - 272252 - G 75 -11.8 -3.2661 | overlap 272247 272245 GGAAATAAGATGCAA GGGCCG TCCT CGGCCC ACCGCCGCCAGCCGG TERM 210 273056 - 273037 - G 71 -11.4 -3.21912 | GTGGCAAGCGATCAA GCCAGACG AAGG CGTCCGGC ACGAGGTAGCGGGGC TERM 211 277157 - 277172 + G 77 -10.4 -3.87815 | GCCTGCCTCGTTCCT GCGCAG GCCT CTGCGC TTTCTGGAGCTGGCA TERM 212 277195 - 277222 + G 87 -7.6 -4.72272 | opp_overlap 277193 AGCTGGCAAGCCATG TTCGCGCCACCG TCAT TGGCGGCCCGAA TTTTTCCTACGAGCA Avi_7308 276366 - 278633 + | polyketide synthetase TERM 213 279290 - 279310 + G 71 -11.1 -3.25823 | overlap 279297 GCGTTCAGGCGACTT GTGCCACGG CGC TCGTGGCGC TTCATCTCGCGGCAC TERM 214 279431 - 279450 + G 71 -10.7 -3.53811 | opp_overlap 279418 AAGGCATCGCCTCCC CGGACGG GGCATG CCGTCCG TTTGACGCCAATGCC TERM 215 281347 - 281317 - g 75 -5.3 -4.56597 | gap 1, overlap 281320 CTTGTTGCCGAAAAA GATGCAGGCCCGCG CCGC CGCGTGCC-ACTTC CAACCTACCCTTTTC TERM 216 281620 - 281610 - g 74 -6.8 -4.27617 | CATAGCCTATGAAAA TGCC GGG GGCA CGTATCACATCGACT Avi_7309 278797 - 283257 + | polyketide synthase TERM 217 283408 - 283432 + G 72 -9.9 -3.68619 | overlap 283409 ATGACAATGGCCTGA GCGCGCTCTGG GTG CCAGAGCGCCA TTTCCATGCCTTCGG TERM 218 283409 - 283431 + G 76 -13.4 -2.8085 | overlap 283408 TGACAATGGCCTGAG CGCGCTCTGG GTG CCAGAGCGCC ATTTCCATGCCTTCG Avi_7310 283302 - 284369 + | monooxygenase TERM 219 286433 - 286466 + G 74 -8.1 -4.11216 | gap 1 CACCTGCGCTCTATG GCCGTCTCGCCGGG GCTTGCG CCCGGTGAT-CGGC TTTTGGCAATCACCA TERM 220 288283 - 288298 + G 79 -6.8 -4.56597 | overlap 288271 288287 GCACGCTCTTGCCGA TCTGCC GCAA GGCGGA TTTTTGGGAGAGACA Avi_7311 284375 - 290926 + | peptide synthetase TERM 221 291867 - 291919 + G 71 -10.6 -3.53761 | gap 2 TGCTCGTCGGCTATC GCTGGGGCG-AAGGTC-GGCGGCAGG ACG CCTATCGTCAGGCGTTGCGCTCCAGC TTTGCGGCGACCTTG Avi_7312 290930 - 292306 + | hypothetical protein Avi_7313 292394 - 292912 + | hypothetical protein Avi_7315 294453 - 293638 - | hypothetical protein TERM 222 294280 - 294296 + g 73 -12.3 -3.14602 | opp_overlap 294279 294278, overlap 294278 ATCTTTTATGAAATT CGCCAGA ATA TCTGGCG TGTTGGTGAAATAGG Avi_7317 294815 - 294618 - | transposase TERM 223 295062 - 295072 + H 93 -8.2 -4.82901 | opp_overlap 295062 CTATATTACCGGAAA GCCC ATC GGGC TTTTTATGCAGGGAC TERM 224 296385 - 296370 - g 72 -4.6 -4.66609 | opp_overlap 296378 CATTGCAGTTAAAAA GAAGGC CATG GCCTGC ATCAAGGCGCTAGGT TERM 225 296655 - 296640 - g 72 -4.6 -4.57073 | opp_overlap 296648, overlap 296645 CATCGCCGTCAAAAA GAAGGC CATG GCCTGC ATCAAGGCGCTGGGT Avi_7320 295759 - 298083 + | methyl-accepting chemotaxis protein TERM 226 298225 - 298280 + T 72 -10.3 -3.38046 | overlap 298225 298230 298232 298233 TAGCGTCCCTGAGTA TCCTCGATCCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGGCTATTGGC TATTTGACGTAAGCG TERM 227 298230 - 298275 + T 100 -16.2 -3.24289 | overlap 298225 298225 298232 298233 TCCCTGAGTATCCTC GATCCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGGCTA TTGGCTATTTGACGT TERM 228 298232 - 298273 + T 100 -18.8 -3.182 | overlap 298230 298225 298225 298233 CCTGAGTATCCTCGA TCCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGGC TATTGGCTATTTGAC TERM 229 298233 - 298272 + T 100 -22.3 -2.50438 | overlap 298232 298230 298225 298225 CTGAGTATCCTCGAT CCAGACCGTGCTCTCGC CGCCAA GCAAGAGCACGGTCTGG CTATTGGCTATTTGA asg 299899 - 298934 - | asparaginase TERM 230 299473 - 299485 + g 72 -4.8 -4.56597 | AGGACTGTTCCACCA TCGG CAGGC CCGA TTTTTGGGCAAAGGC Avi_7323 300754 - 299936 - | hypothetical protein dppC 301742 - 300840 - | ABC transporter membrane spanning protein (dipeptide) TERM 231 301687 - 301668 - G 71 -7.8 -4.08692 | GAATTTGCGCCAAAA TTCGCTCC AAGG GGTGCGAA CAGCGCGGCTGGTCT dppB 302670 - 301750 - | ABC transporter membrane spanning protein (dipeptide) TERM 232 302759 - 302792 + r 74 -7.4 -4.09511 | gap 1, opp_overlap 302760, overlap 302760 GAAATGCGTAAAAGG AGTG-TCTCGGCGCT AGATC AGCGCCGGGATCGCG TTTTCAGAAGGTGTT TERM 233 302760 - 302791 + r 72 -10.9 -3.05224 | gap 1, opp_overlap 302760, overlap 302759 AAATGCGTAAAAGGA GTG-TCTCGGCGCT AGATC AGCGCCGGGATCGC GTTTTCAGAAGGTGT dppA 304359 - 302806 - | ABC transporter substrate binding protein (dipeptide) TERM 234 303447 - 303415 - G 71 -12.8 -2.57132 | gap 1, overlap 303414 GCCTTCTGGCACAAC GCCTTCGGCGGGCTT GGCA AAGCC-GCTGAAGGC CACCTTGGCAAGGGC Avi_7329 306283 - 304403 - | ABC transporter nucleotide binding/ATPase protein TERM 235 304572 - 304583 + g 79 -5.8 -4.8048 | opp_overlap 304542, overlap 304542 304541 TCGGCAATCGGCACG GCTG CCAT CAGC TTTTTGGTATAGGGG TERM 236 304634 - 304618 - G 87 -9.4 -4.56597 | opp_overlap 304617 304618 GCGGGTTTTCAAAAA TGGCCC GGCGT GGGCCA ATTTCAACAATCTGC TERM 237 305428 - 305406 - G 72 -6.3 -4.371 | gap 2, overlap 305408 CCCACCAGATCAAAA GCGCGCGGACC ATC GGTCC-CG-GC CATGGCCCCAAGGCG TERM 238 305975 - 305936 - G 74 -11.6 -3.53224 | gap 1, opp_overlap 305972, overlap 305939 CATCGGCTCTTGAAA GATCATG-GCAATATCCGC ACC GCGAATACTGCGCATGGTC GGCGTATCGGCCTTT Avi_7330 307262 - 306321 - | transcriptional regulator Avi_7332 307726 - 308790 + | Transcriptional regulator/sugar kinase xylR 309997 - 308759 - | transcriptional regulator ROK family TERM 239 309234 - 309249 + g 75 -11.8 -3.29144 | opp_overlap 309213 AACGGTCTGGTTTCA CCGGCC AATG GGCCGG TTGTGACCGCCGTGG TERM 240 309388 - 309369 - G 85 -3.5 -5.48787 | AGAATATAGAAAAAA CTGCGCA TTTCGG TGCCCAG CCCATATTCAATCTC Avi_7334 313100 - 310077 - | alpha-D-mannosidase TERM 241 311313 - 311273 - G 71 -10.5 -3.61268 | gap 2, overlap 311276 CAGGCAATTGCGAAA GAATGGCATCGACGGCAGC TTTTT GC-GCCGCCG-CGCCATCC ATCAGCACCTGTTCA TERM 242 311310 - 311276 - G 72 -8.6 -3.94 | gap 2, overlap 311273 GCAATTGCGAAAGAA TGGCATCGACGGCAGC TTTTT GC-GCCGCCG-CGCCA TCCATCAGCACCTGT TERM 243 312479 - 312498 + g 72 -6.4 -4.2828 | opp_overlap 312481, overlap 312481 CAGGGTCGGCCTTTA AATCTGGC AGCT GCCAGATC TTTTGCTGCATCACC Avi_7335 313976 - 313134 - | ABC transporter membrane spanning protein (sugar) TERM 244 313896 - 313883 - G 79 -5.9 -4.78848 | overlap 313885 GCGCCAAAGACAAAA GCCAC AGCA GCGGC CATGCGAAAAAAGCA Avi_7336 314815 - 313973 - | ABC transporter, permease protein TERM 245 314956 - 314927 - R 95 -12.1 -4.02334 | overlap 314928 GATTCAGATCACAAA GCGCTGCGGAACC CTTT GGTCCCGCAGCAT CAAAGGGAGTTCAGT TERM 246 314955 - 314928 - R 95 -15.6 -3.00918 | overlap 314927 ATTCAGATCACAAAG CGCTGCGGAACC CTTT GGTCCCGCAGCA TCAAAGGGAGTTCAG Avi_7337 316262 - 314967 - | ABC transporter substrate binding protein TERM 247 315082 - 315118 + g 70 -12.1 -2.74322 | opp_overlap 315080 315092, overlap 315081 ATCTGATTGGAAATT TCGGGATAGACCGGCGC ACC GGGCCGGGCTTGCCCGA CTTTCAGGGCTTCCG Avi_7338 316447 - 317445 + | ABC transporter nucleotide binding/ATPase protein (sugar) attR 319251 - 317614 - | transacetylase TERM 248 317815 - 317837 + g 71 -12 -2.90075 | overlap 317817 AGTTGCGATTTCCAT CGCCTCGTCG CGG CGATGAGGTG TCTGCTTCAGGCAAA TERM 249 318048 - 318017 - G 78 -3.6 -4.95155 | gap 1, opp_overlap 318022, overlap 318020 318021 GTCAGACGATAAAAA CCA-TTGACCGGCTG CAA CAGCCCGTCTTCTGG TGTCACCGTACCCCA TERM 250 318022 - 318042 + g 73 -11.1 -3.4678 | opp_overlap 318021 318020 318017 ACGATAAAAACCATT GACCGGCTG CAA CAGCCCGTC TTCTGGTGTCACCGT Avi_7340 321104 - 319257 - | hypothetical protein TERM 251 319972 - 319994 + g 70 -4 -4.56597 | overlap 319973 319974 319989 ACGATATTGCCCGGC GTGTGCATGG CCA CCATGCCCGG TTTTTCGAGCGGCAC TERM 252 321165 - 321136 - R 76 -12.2 -2.60075 | opp_overlap 321134 321133, overlap 321135 CTGTTTCGAATGAAT TGGCCGCAGG AAGGTGTGAA CCTGCGGCCA GACTTGCTGTGGACT Avi_7341 322459 - 321179 - | sugar ABC transporter sugar-binding protein Avi_7342 323219 - 322509 - | hypothetical protein Avi_7343 324341 - 323232 - | ABC transporter nucleotide binding/ATPase protein Avi_7344 325528 - 324356 - | Unsaturated glucuronyl hydrolase TERM 253 325127 - 325177 + g 90 -16 -3.53091 | GTAGCGTTCGATCAG CTGGTCGGCGGCAAGGAGTGCCGC CTT GCGTCCATCCTCGTCGCCCACCAG TTTCCACGCGGCAAT Avi_7346 326369 - 325533 - | ABC transporter membrane spanning protein (sugar) TERM 254 326133 - 326114 - G 71 -7.2 -4.24123 | gap 1 TCAACAATTGCAAAA GCGTGACGA TGA TCGTCA-GC TTCGAGGTGTTGTAG TERM 255 326250 - 326240 - G 77 -2.4 -5.0916 | TCGGGAAGACAAAAA CGTC GCG GTCG AGCTTTAGCGAGGCC Avi_7347 327335 - 326373 - | ABC transporter membrane spanning protein (sugar) TERM 256 327416 - 327438 + H 70 -6.2 -4.24342 | GTTGCACCCGTCTCC CGATCCCTGC ATA GCATAGATCG TTTATTGGTCAAACA Avi_7349 327547 - 329352 + | hypothetical protein Avi_7350 329364 - 330149 + | hypothetical protein Avi_7351 331007 - 330153 - | transcriptional regulator GntR family TERM 257 330235 - 330248 + g 93 -9.5 -4.72986 | AGATGATCCTGCATA GCGGC GCGG GCCGC TTTTTCGTCGCCGTC TERM 258 330860 - 330877 + g 77 -7.7 -4.27316 | gap 1, overlap 330862 GTGCGACCAGGGAGC CA-GCGCC CTT GGCGCGTG TTTTCACTTGACCGG ych 331283 - 331026 - | hypothetical protein Avi_7353 331832 - 331392 - | hypothetical protein TERM 259 332172 - 332152 - H 73 -9.6 -3.60818 | GGAAAATCGCTTAAA CGGCGTGC GCAAG GCGCGCCG TCCTGGGAGGAGAAC Avi_7355 332202 - 333254 + | ABC transporter nucleotide binding/ATPase protein (sugars) TERM 260 333279 - 333318 + F 90 -11.4 -3.9392 | GGGAAAAGTGGAAGC CTGCTTTCGCCCGTCCAC GGGA GGGGACATGTGAAAGCAG TTATTTGACATAGGC TERM 261 334652 - 334631 - g 70 -4.3 -4.68512 | TGAGAAGAAAAAGAA GGCAGCC TGGAGTGC GGCGGCC CATCTCGGCGGCAAG Avi_7356 333642 - 335015 + | ABC transporter, binding protein TERM 262 335046 - 335023 - f 95 -12.4 -4.18018 | opp_overlap 335023 335027, overlap 335037 335038 GCGTTTGAGCCAAAA CCGACGGCAG GAAA CTGCCGTTGG TGTTCCCAAACGGCG TERM 263 335023 - 335046 + F 93 -14.6 -3.01712 | opp_overlap 335023 335037 335038, overlap 335027 GCGTTTGAGCCAAAA CCGACGGCAG GAAA CTGCCGTTGG TGTTCCCAAACGGCG TERM 264 335027 - 335042 + F 72 -10.4 -3.36273 | opp_overlap 335023 335037 335038, overlap 335023 TTGAGCCAAAACCGA CGGCAG GAAA CTGCCG TTGGTGTTCCCAAAC TERM 265 335093 - 335057 - f 71 -9.5 -3.53012 | gap 1, opp_overlap 335057 335060, overlap 335037 335038 335058 GTTGGTGTTCCCAAA CGG-CGTCAGGCGG CTTTCTCATT CCGCCTGACGTCCA TTCATCAGCCTAAAG TERM 266 335091 - 335058 - f 70 -11 -2.71712 | opp_overlap 335057 335060, overlap 335037 335038 335057 TTGGTGTTCCCAAAC GGCGTCAGGCGG CTTTCTCATT CCGCCTGACGTC CATTCATCAGCCTAA TERM 267 335060 - 335089 + F 76 -12.2 -2.56715 | opp_overlap 335037 335038 335058 335057, overlap 335057 GGTGTTCCCAAACGG CGTCAGGCGG CTTTCTCATT CCGCCTGACG TCCATTCATCAGCCT Avi_7357 335160 - 336269 + | ABC transporter membrane spanning protein (sugar) Avi_7358 336280 - 337200 + | ABC transporter membrane spanning protein Avi_7360 337242 - 337697 + | hypothetical protein rbsK 337708 - 338634 + | ribokinase TERM 268 338702 - 338686 - f 72 -8.1 -3.89346 | opp_overlap 338677 TTTTTACTTTACAAA TCACAAA TAT TTTGTGA AGTATGAAGTGTAGT Avi_7362 338738 - 339718 + | xylose isomerase TERM 269 339784 - 339766 - f 74 -8.8 -3.90291 | opp_overlap 339767, overlap 339767 ACCTTTGTAACCAAA GGCATGCC GGA GGCATGCT TGATGATACCACCTG TERM 270 339767 - 339783 + F 81 -12.3 -3.21218 | opp_overlap 339767 339766 CCTTTGTAACCAAAG GCATGCC GGA GGCATGC TTGATGATACCACCT TERM 271 339783 - 339767 - f 78 -12.3 -2.93853 | opp_overlap 339767, overlap 339766 CCTTTGTAACCAAAG GCATGCC GGA GGCATGC TTGATGATACCACCT Avi_7364 339924 - 340874 + | ABC transporter substrate binding protein TERM 272 340885 - 340915 + F 100 -19.8 -3.06696 | opp_overlap 340879 340876 340889 AATAATCGAGGTTAA CGCACTGCCAGCTT TCA GGGCTGGCAGTGCG TGTCTTGCAGGAGGA TERM 273 341307 - 341344 + G 71 -10.5 -3.53563 | gap 1, opp_overlap 341299 341301 GCAGGAACAGCGGGC CGCCGAAGC-GCTGTCGA TGA TCGACCGCAGCATCGACG TTTCCGCGCCCATCT TERM 274 341471 - 341521 + G 72 -6.4 -4.27843 | gap 4 TGACGCCGAGCGAGT TCGAC-CG--GCTGGCTGAGGTGATT GCC GATC-TCTCGGCCAGCGGCGTGTCGA TTATTTATGTTTCGC TERM 275 342066 - 342049 - g 93 -12.7 -4.13945 | opp_overlap 342048 342047 ATCCGCACCGGAAAA CTGCGCG CCAG CGCGCAG GATTTGCTGAAGCGT rbsA 340939 - 342459 + | ABC transporter nucleotide binding/ATPase protein (ribose) rbsC 342479 - 343456 + | ABC transporter membrane spanning protein (ribose) Avi_7367 343453 - 344328 + | transcriptional repressor of rpiB expression; transcriptional repressor of ribose catabolism (RpiR/YebK family) Avi_7369 344325 - 345224 + | ribokinase TERM 276 345326 - 345284 - T 78 -9.2 -3.97437 | overlap 345285 345288 345320 ACGAAAACAAGAGAA TTTAGAGTCTGTCTGGTTCA ATC TGAACGTGACAGACTCTAGG CTAAAGGTTTCACCC TERM 277 345325 - 345285 - T 78 -12.7 -2.96836 | overlap 345284 345288 345320 CGAAAACAAGAGAAT TTAGAGTCTGTCTGGTTCA ATC TGAACGTGACAGACTCTAG GCTAAAGGTTTCACC TERM 278 345322 - 345288 - T 90 -14.4 -2.69386 | overlap 345285 345284 345320 AAACAAGAGAATTTA GAGTCTGTCTGGTTCA ATC TGAACGTGACAGACTC TAGGCTAAAGGTTTC Avi_7370 346077 - 345322 - | transcriptional regulator Avi_7371 346190 - 347104 + | zinc-binding oxidoreductase TERM 279 347574 - 347588 + G 72 -8.6 -3.90318 | opp_overlap 347569 347567 ATTGAGAACATGGCC CCTTTG GAG CAAAGG TTTCTCCAGTCATCC Avi_7373 347511 - 348617 + | hypothetical protein Avi_7374 350341 - 348707 - | ribitol kinase TERM 280 350284 - 350252 - G 75 -9.7 -3.83205 | overlap 350254 350255 ACCGCTCAGATCAAA CAGGCCGGCACGGGC GCT GCCTGTGCCGACGTC GACGCCGATAATGTA TERM 281 350282 - 350254 - G 77 -12.3 -3.5032 | overlap 350252 350255 CGCTCAGATCAAACA GGCCGGCACGGGC GCT GCCTGTGCCGACG TCGACGCCGATAATG TERM 282 350281 - 350255 - G 84 -15.8 -2.69871 | overlap 350254 350252 GCTCAGATCAAACAG GCCGGCACGGGC GCT GCCTGTGCCGAC GTCGACGCCGATAAT TERM 283 350391 - 350411 + r 75 -11.9 -3.02144 | TGAGGATGAGGATGA GCGTCGATT AAA GATCGACGC TGTTGGGCACAATCA rdh 351126 - 350398 - | ribitol 2-dehydrogenase xylH 352411 - 351152 - | ABC transporter membrane spanning protein (xylose) xylG 353241 - 352408 - | ABC transporter nucleotide binding/ATPase protein (xylose) TERM 284 353315 - 353331 + r 70 -4.3 -4.57073 | opp_overlap 353316, overlap 353316 CAGATCAGAACAATT ACTGGGT GAT GCCCAGC TTTTTGCAGCCAGTG xylF 354359 - 353313 - | ABC transporter substrate binding protein (xylose) TERM 285 354152 - 354162 + g 77 -8.2 -4.2828 | GCTGAAGTGCGGTAT CGCC ATT GGCG TTTTGATAAATCACC TERM 286 354539 - 354504 - H 100 -17.8 -3.43217 | overlap 354495 TCCAAAGCCAACCAA CTTCATCGATTGAGCA ACGT TGCTCAATCGATGACG CAAGAATTGCCATCT TERM 287 354664 - 354680 + G 75 -8.7 -4.08064 | TGCGGGCACATCGGC CAGCGCT GTG AGTGCTG TTTTGAACGGCAATT TERM 288 355155 - 355144 - g 83 -4.4 -5.0538 | TCGTATTCTAAAAAA TTGC CACA GCAA GACCGGCAAGGCCGC Avi_7379 354596 - 355639 + | transcriptional regulator LacI family TERM 289 356019 - 356050 + F 72 -8.6 -3.81027 | gap 1, opp_overlap 356019 ATTCGTACTGAACAA CGCGCTCGCCCTACC CAT GGTTTGGCGGGC-CG TTTGCGTTGATTGCA Avi_7380 356152 - 356562 + | hypothetical protein Avi_7381 357940 - 356732 - | permease Avi_7382 358990 - 358001 - | transcriptional regulator AraC family TERM 290 359432 - 359452 + H 75 -5.4 -4.72272 | TCAACGATCGTGTCG TGCGGTTG AAAAG CGACTGCA TTTTTCCTGGGGAGA nrdH 359928 - 360227 + | glutaredoxin protein nrdI 360238 - 360654 + | nrdI protein Avi_7387 360696 - 362777 + | ribonucleoside-diphosphate reductase alpha subunit nrdF 362792 - 363781 + | ribonucleoside-diphosphate reductase 2 beta chain TERM 291 364041 - 363983 - T 85 -14 -2.75769 | gap 3, opp_overlap 363983, overlap 363979 CCTTCAAATTACAAC CGAGCCGGGCTG-CGATCAAC-CACCATG GGAC CACCGTGCGGTG-CCGTCAGCCCGGCTCG TCTGATACGGCCAGA Avi_7389 364340 - 364029 - | transcriptional regulator Avi_7390 364439 - 365530 + | xenobiotic reductase A TERM 292 365588 - 365556 - f 100 -17.2 -3.48395 | opp_overlap 365554 365553 365586, overlap 365559 365578 ACCGTCGCGACAGAA TAACCACCGCGATT AAGGA AACCGCGGTGGTTA CAGTTTGTAATCTCT TERM 293 365585 - 365559 - f 100 -14.5 -3.88232 | opp_overlap 365554 365553, overlap 365556 365578 GTCGCGACAGAATAA CCACCGCGATT AAGGA AACCGCGGTGG TTACAGTTTGTAATC TERM 294 365660 - 365627 - f 70 -4.5 -4.52589 | gap 1, opp_overlap 365629, overlap 365629 TGGCGCGATAGAAAA GAGCGGC-AGTCTTTG CGA CAGAGGCTCGCCGCTT CTGTCGCACGGTCCA TERM 295 365629 - 365658 + F 82 -11.5 -3.48593 | gap 1, opp_overlap 365627 365629 GCGCGATAGAAAAGA GCGGC-AGTCTTTG CGA CAGAGGCTCGCCGC TTCTGTCGCACGGTC gatA 366219 - 367574 + | glutamyl-tRNA amidotransferase subunit A Avi_7393 367608 - 368393 + | ABC transporter substrate binding protein (amino acid) TERM 296 368414 - 368433 + F 88 -8.5 -4.64676 | GAGTGAAGGGTTGGA GCCGGTC CTTCAT GGCCGGC TTTTCTTCAAACTCG Avi_7394 368464 - 369186 + | ABC transporter membrane spanning protein TERM 297 369776 - 369797 + G 75 -10.1 -3.66897 | opp_overlap 369775 ACCTTTCGAACCTAC GAGCCGCTG CTCG CAGCAGCTC TTGTCTACTTTGTCC Avi_7395 369188 - 369874 + | ABC transporter membrane spanning protein Avi_7396 369971 - 370864 + | Transcriptional regulator TERM 298 370861 - 370899 + T 100 -13.4 -4.13728 | opp_overlap 370865 370871 AGCCCTCAGCGAGCA GTAATACGAAGATTCATT GAA AATGACTCTTCGTATTCC TTTTGAAAATATCTC TERM 299 370895 - 370865 - T 81 -12.8 -3.22298 | opp_overlap 370861, overlap 370871 CTCAGCGAGCAGTAA TACGAAGATTCATT GAA AATGACTCTTCGTA TTCCTTTTGAAAATA Avi_7397 372187 - 371039 - | Selenocysteine lyase Avi_7398 373212 - 372196 - | ornithine cyclodeaminase Avi_7399 373498 - 374628 + | oxidoreductase TERM 300 374751 - 374770 + G 72 -5.6 -4.54821 | opp_overlap 374722 GGTCAGACCGAGCAG GTGCTGGC CAAG GCCAACGC TTTTCTCGTTAAGAT Avi_7400 374625 - 374975 + | hypothetical protein TERM 301 375210 - 375231 + F 100 -10.1 -4.94672 | ATGTCACGCCTCTTG GAACGGGGC AAGC GACCCGTTC TTTTTGGTCTTATTT TERM 302 375948 - 375961 + G 75 -9.5 -3.90291 | opp_overlap 375945 TCTGAGGATAAGGGC GCGCG CGAT CGCGC TTTCATTAAGGAGAT Avi_7402 375396 - 376295 + | Transcriptional regulator TERM 303 376346 - 376305 - f 100 -18.7 -3.16564 | opp_overlap 376305 376307 GCTTGATTGCATCAA TATGGCCCGCCCACGAGGG GTTT CCTTCGTGGGCGGCCCCTA TTGGCTCAGAGGAAG TERM 304 376305 - 376346 + F 100 -20.9 -3.05384 | opp_overlap 376305, overlap 376307 GCTTGATTGCATCAA TATGGCCCGCCCACGAGGG GTTT CCTTCGTGGGCGGCCCCTA TTGGCTCAGAGGAAG TERM 305 376307 - 376344 + F 100 -19.1 -3.08679 | opp_overlap 376305, overlap 376305 TTGATTGCATCAATA TGGCCCGCCCACGAGGG GTTT CCTTCGTGGGCGGCCCC TATTGGCTCAGAGGA Avi_7403 376370 - 377011 + | hypothetical protein TERM 306 377049 - 377091 + F 77 -8.9 -4.07568 | gap 2 CTGTTCGTATTCTAT TTTCGAATATCTC-AAT-CAT CTG ATGCATTTGAGATATTCGGAA TTTTGCAAGACGAGG TERM 307 377534 - 377544 + F 78 -5.4 -4.82901 | TATATATATTTATAT TCGA CAA TCGA TTTTTGTACGCACGA TERM 308 377721 - 377697 - g 83 -7.7 -4.70266 | AAGAGCACTCAAAAA CAGGGGACGCC ATT GGCGCAACCTG AACCCGGCCTCACAC Avi_7405 377643 - 378932 + | Acyl-CoA dehydrogenase Avi_7406 378983 - 379618 + | 4-hydroxyphenylacetate 3-monooxygenase reductase component TERM 309 379698 - 379734 + F 77 -11.7 -3.18264 | gap 1, opp_overlap 379697 379696, overlap 379700 TCACACTCTGAAAGC CG-TCACCGATCAGGG CGCGAC CCCTGATCGGTCATCG TTGATGAATGCAGGC TERM 310 379700 - 379731 + F 81 -13.1 -2.79098 | opp_overlap 379697 379696, overlap 379698 ACACTCTGAAAGCCG TCACCGATCAGGG CGCGAC CCCTGATCGGTCA TCGTTGATGAATGCA Avi_7407 379820 - 382147 + | ferrienterobactin-like protein TERM 311 382265 - 382306 + T 91 -9.4 -4.67943 | gap 1, opp_overlap 382265, overlap 382272 TCGCATTCGGAGAGA CCGCGTTTCGTCGTCCGGT TTACC GCCGGACGACGATTT-CGG TTTTGTGTCTTGCCC TERM 312 382272 - 382300 + T 100 -16.8 -3.98312 | opp_overlap 382265, overlap 382265 CGGAGAGACCGCGTT TCGTCGTCCGGT TTACC GCCGGACGACGA TTTCGGTTTTGTGTC Avi_7409 383233 - 382376 - | Transcriptional regulator TERM 313 383308 - 383325 + H 77 -6.9 -4.47551 | overlap 383310 CGCCCAAGAGCGGAC GGTGCCG ATAA CGGCAAC TTTTGTGGATTGGAT Avi_7410 383454 - 384209 + | arylmalonate decarboxylase TERM 314 385338 - 385356 + G 73 -12.4 -3.05384 | opp_overlap 385316, overlap 385332 385340 CGGCATGTCGCGGCA CGCCAGCG TTA CGCTGGTG TTGGGTCAGGAGGAC Avi_7411 384226 - 385377 + | Acetyl-CoA acetyltransferase TERM 315 386536 - 386513 - g 77 -12.4 -3.54129 | overlap 386515 CAGACGGTCGCCAAA TATCCGGCCC CTGC GGGCCGGATG GGCCGCCGTGCGCCA TERM 316 386534 - 386515 - g 87 -15 -3.34715 | overlap 386513 GACGGTCGCCAAATA TCCGGCCC CTGC GGGCCGGA TGGGCCGCCGTGCGC Avi_7413 385841 - 387226 + | ScoB Avi_7414 387340 - 387768 + | hypothetical protein TERM 317 387804 - 387825 + T 100 -17.3 -5.38958 | ACCGGGTCATTTGAA CCGCCGCTC GCAA GAGCGGCGG TTTTTCTTTGTGGAT TERM 318 388059 - 388103 + T 100 -18 -4.08651 | gap 1, opp_overlap 388049 388059 388067 AGCGACCTGCCCAAA CAGGAGAAGGCCGAC-CTGGC TTTC GCCACCGTCGACCTTCTCCTG TTGTTTCATTGCGAT TERM 319 388103 - 388059 - T 100 -20.2 -3.54543 | gap 1, opp_overlap 388059, overlap 388049 388067 AGCGACCTGCCCAAA CAGGAGAAGGCCGAC-CTGGC TTTC GCCACCGTCGACCTTCTCCTG TTGTTTCATTGCGAT Avi_7416 389435 - 388188 - | Permeases of the major facilitator superfamily Avi_7417 389768 - 390919 + | oxidoreductase Avi_7418 391027 - 391692 + | gamma-carboxymuconolactone decarboxylase subunit TERM 320 392169 - 392187 + G 78 -6.6 -4.58395 | overlap 392171 CCTCCCTGATGGTTT GTGTCGGT GAT GCCGACCC TTTTTCGCCGATGAG Avi_7419 391694 - 392398 + | hypothetical protein Avi_7421 392484 - 393329 + | oxidoreductase Avi_7422 393334 - 393894 + | hypothetical protein hpcE 393954 - 394808 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 321 394822 - 394812 - T 80 -5.4 -4.88736 | GAGCAGCTATAAAAA TCCT ATG AGGA CAATGATCGGATACG TERM 322 394885 - 394929 + T 74 -7.4 -4.02022 | gap 1, opp_overlap 394893, overlap 394888 394913 394921 AGGCTTATCTGTTTT CTATTATAGCGTTGTGCAC CATCGAGA GTGC-CAACGCTATAATGC TTTATAGTCGTTGCA TERM 323 394888 - 394926 + T 75 -11.3 -3.05238 | gap 1, opp_overlap 394893, overlap 394885 394913 394921 CTTATCTGTTTTCTA TTATAGCGTTGTGCAC CATCGAGA GTGC-CAACGCTATAA TGCTTTATAGTCGTT TERM 324 395036 - 394992 - T 90 -11.6 -3.94746 | CCAGATCCAATGAAA TTGAGGCCATTTAGCATC CAGATCGGT GACGCTGAACGGCCTCAA GAAGGCTGCCGATGG Avi_7425 396568 - 395057 - | monooxygenase FAD-binding Avi_7426 398033 - 396552 - | 2-methylcitrate dehydratase family protein Avi_7427 398288 - 398731 + | hypothetical protein Avi_7428 398827 - 399360 + | ring-cleavage extradiol dioxygenase TERM 325 399405 - 399461 + F 86 -12.4 -3.42658 | gap 2, overlap 399392 399452 TCGTGCGCGCGTTGA CGAGGC--ACTGGATTCTGTCCGGCTCA GAT TGAGCCGGACAGAGTCTAGGAAGCCGGG TTCCATTTTATCCTC Avi_7430 399505 - 400440 + | fumarylacetoacetate (FAA) hydrolase family protein Avi_7431 400596 - 401369 + | Transcriptional regulator Avi_7432 401388 - 401936 + | hypothetical protein Avi_7433 403052 - 401961 - | ABC transporter membrane spanning protein (branched chain amino acid) TERM 326 402557 - 402592 + g 77 -8 -4.27316 | opp_overlap 402543 402542 TCTCGCGGGTCGCCT CGCGTGGCAGCGACGC CCCG GTGCCGCCGCCCAGCG TTTTCCATTGGGCAA Avi_7434 403926 - 403063 - | ABC transporter membrane spanning protein (branched chain amino acid) TERM 327 403358 - 403335 - G 73 -11.1 -3.41051 | overlap 403316 CGATTGTGACCACAA CCATGGCAA GCCCTG TTGCCATGG CAAAGATACGGTGCG Avi_7436 404638 - 403913 - | ABC transporter TERM 328 404390 - 404368 - G 71 -6.9 -4.14739 | TGAGCGAGGGGAAAA GCTTGCGCC CTTCC GGCACCAGC GCAATGCCACGGGCC Avi_7437 405354 - 404635 - | ABC transporter nucleotide binding/ATPase protein TERM 329 405405 - 405375 - R 88 -10.5 -4.07568 | gap 2, opp_overlap 405375, overlap 405379 GGCTCCTGTTGAAAA CGCACCCGCTCCGCA GTG TG-GGAGCGGG-ACG TTTGCGCTCACGCGA TERM 330 405402 - 405379 - R 81 -13.2 -2.74605 | gap 1, opp_overlap 405375, overlap 405375 CCTGTTGAAAACGCA CCCGCTCCGCA GTG TG-GGAGCGGG ACGTTTGCGCTCACG Avi_7438 406807 - 405413 - | ABC transporter substrate-binding protein TERM 331 406144 - 406154 + g 74 -2.4 -4.87665 | opp_overlap 406144 406145 CATCATTGGGAAACA GGCC GCC GACC TTTTTGTCGGTCGCA TERM 332 406998 - 407020 + r 85 -13.5 -3.21912 | GAACTGGCATTCGAA TGGCACCGA TCATC TCGGTGCCA TTGCTGGCTTAGAGC TERM 333 407049 - 407084 + r 70 -9.7 -3.17212 | gap 1, opp_overlap 407044 407043 407057 GCGCCAAAATCTGCC GCAGCACAC-GGCGCA AGTCG TCCGCCGGTGTGCCGC TTGCTGCCGTGCTGC Avi_7439 408786 - 407029 - | 2,4-dichlorophenol hydroxylase TERM 334 408578 - 408543 - G 81 -8.4 -4.3739 | gap 1 GACTTTCGCAGAAAA TGTTTTCG-CCCATCAG TTC CTGATGCGTCGCAAACA AGTAGGCCTCGTCCT macA 409888 - 408815 - | maleylacetate reductase TERM 335 409525 - 409539 + g 72 -8.6 -3.86897 | opp_overlap 409538 CACTGCCCGCATAGG TCGTTG GAA CAACGA TTTGTGGCAGATCAC TERM 336 410279 - 410293 + G 75 -5.6 -4.67982 | overlap 410281 CGGGCCGATTGCGTC TGGGCG GAA CGCCAA TTTTCTTCGATGGCG Avi_7441 409990 - 410940 + | transcriptional regulator LysR family Avi_7442 411283 - 410951 - | hypothetical protein Avi_7443 412133 - 411297 - | dioxygenase TERM 337 412402 - 412413 + r 76 -3.6 -4.96845 | overlap 412392 GTGATCCAAGTGTTT TGGC TTCT GCCG TTTGTTTGTTTTTGT TERM 338 412519 - 412505 - R 79 -4.2 -5.09225 | ACTTCATCGAAAAAA TGTTGC CAA GCATCA AAGACTGGAGGCGCA Avi_7446 416144 - 413058 - | alpha-D-mannosidase TERM 339 414185 - 414208 + g 79 -5.4 -4.83615 | gap 1, overlap 414174 414186 CGGCGGGCAGGGGGC TTGCGCTTTCA ATC TGAAA-CGCAG TTTTTCTGGAGCCTG TERM 340 415104 - 415089 - G 72 -4.6 -4.58685 | opp_overlap 415089 415094 415095 415097, overlap 415091 AAACTGCCGCAAAAA GGCCTC TGCC GAGGGC ATGTTGGTATCACAC TERM 341 415189 - 415165 - G 74 -13 -2.87132 | opp_overlap 415162 415159 CGGCCTTCCGAGACA CGCTGTTTGA TCTCT TCAAACAGCG CCGGGTCTTCTTGCT Avi_7450 416575 - 417717 + | extracellular solute-binding protein TERM 342 417764 - 417790 + G 83 -13.7 -3.52896 | opp_overlap 417754, overlap 417749 AAGGATCGCGCTGGA CCGGATTGGCC TTTGT GGCCATTCCGG TTCTGTCCATCGTGA potB 417721 - 418590 + | ABC transporter membrane spanning protein TERM 343 418669 - 418680 + G 83 -5.8 -4.9725 | TCTTTATCGTTCTGC CCGT GCTC ACGG TTTTTCTCTGGGCCT TERM 344 418766 - 418791 + G 83 -13.9 -3.58269 | overlap 418786 CTGGTCTGCGGTCTT GGCCCGCCCGG ATGT CTGGGCGGCCC TTTGGACGTCGGTTG Avi_7452 418593 - 419408 + | ABC transporter membrane spanning protein afuC 419448 - 420491 + | ABC transporter nucleotide binding/ATPase protein (iron) Avi_7454 421757 - 420492 - | transcriptional regulator ROK family Avi_7455 422682 - 421804 - | hypothetical protein Avi_7457 422937 - 424013 + | hypothetical protein Avi_7458 424789 - 424178 - | hypothetical protein Avi_7459 425244 - 424795 - | transcriptional regulator TERM 345 425188 - 425160 - G 74 -11.1 -3.57144 | CCGCCGACGCGGAAA GCTCGACGATATT GCC AATATCGGCAAGC GAGCGGCGGGCGTCT Avi_7461 425609 - 425400 - | hypothetical protein TERM 346 427685 - 427698 + r 72 -6.7 -4.25104 | opp_overlap 427674 TACATGAACTACCTC CTTGG TGGT CCAAG TTTTCGTCCGCACCC Avi_7466 429228 - 427750 - | hypothetical protein TERM 347 427946 - 427972 + g 71 -8.1 -4.06502 | gap 2, opp_overlap 427944 427945 427942 GTGAGCGAAAACAGC GC-GATTG-CGCC CAT GGCGACAATCAGC TTTGGTTTCACCATC TERM 348 428734 - 428716 - G 78 -3 -5.03314 | overlap 428705 428718 CCGACGTTGAAAAAA CGGCGC GACACGT GCGACG ATAAAGTGGTCAGGC Avi_7467 430457 - 429225 - | hypothetical protein TERM 349 429301 - 429332 + g 90 -8 -5.00616 | gap 1 ATCAAGCGATGCGGC GTCCAGCC-CTCAGC GGT GATGAACGGCTGGAC TTTTTTGAGGGACAC Avi_7470 430710 - 431300 + | transposase TERM 350 431511 - 431497 - f 81 -10 -3.90112 | opp_overlap 431481 GCCTTGTCAATCAAA GCGTGA TAT TCACGC CGAAGCAACGATCGC TERM 351 432272 - 432294 + G 71 -6.9 -4.11216 | opp_overlap 432256 432286 CGGCAAGGCGGAGAA CTGGCCGGG CAACA TCTGGCCGG TTTTGGCCATAGCCA Avi_7472 431762 - 432781 + | transcriptional regulator LacI family Avi_7473 432816 - 433775 + | ABC transporter nucleotide binding/ATPase protein Avi_7475 433772 - 434587 + | ABC transporter nucleotide binding/ATPase protein Avi_7476 434584 - 435588 + | ABC transporter membrane spanning protein (sugar) Avi_7477 435592 - 436659 + | resiniferatoxin-binding phosphotriesterase-related protein TERM 352 436719 - 436703 - g 74 -2.2 -5.02323 | TCATGACAAAGAAAA TTCTCC TCGTG GGTGAA AGCTGGGTCAGCTCC Avi_7478 436690 - 437460 + | hypothetical protein rbsK 438362 - 437466 - | ribokinase TERM 353 437773 - 437785 + g 75 -10.5 -3.63805 | CGCAAGCATTGGGTG GCGGC TTC GCCGC TTTCACCTGTCAGCT Avi_7481 438409 - 439251 + | hypothetical protein amaB 439257 - 440552 + | N-carbamoyl-beta-alanine amidohydrolase Avi_7483 443673 - 440590 - | Acr family transporter Avi_7484 444725 - 443670 - | HlyD family secretion protein nodT 446260 - 444788 - | nodulation protein T precursor TERM 354 445335 - 445348 + g 72 -4.5 -4.57341 | GCGACATCGGCAAGC GAGGC GGCG GCTTC TTTTTCCAGCGCATT TERM 355 445422 - 445465 + g 74 -8.2 -4.23674 | overlap 445417 ACGGACAGTTTCGCA GGGCGCGGTATTTTCGACGA GCTT TTATTGAGAATATCGCGCAC TTTGTCTTCATCAAC chvI 446416 - 447102 + | two component response regulator Avi_7490 447102 - 448373 + | Signal transduction histidine kinase TERM 356 448849 - 448839 - T 72 -8.2 -3.7941 | overlap 448810 CATGTTGCAGAAGAA CCGC TTG GCGG CATCAAGATCGCGCT gstR 450397 - 449507 - | transcriptional regulator LysR family Avi_7498 451267 - 450527 - | hypothetical protein TERM 357 451547 - 451533 - R 100 -12.8 -4.42062 | opp_overlap 451545 CATCTGCCAAATAAA GCGGCG CTG CGCCGC CGTTCAGATAAAGGC Avi_7500 452448 - 451681 - | transposase pecM 453727 - 452804 - | regulator protein pecM orfB 455295 - 454438 - | IS3 family transposase TERM 358 454937 - 454960 + g 78 -9.6 -4.05788 | gap 1, overlap 454946 TCGTTCGAACGGGTG GCTGCGGTGCG GTC CG-ATCGCAGC TTTGCTTTGACGCGC Avi_7505 455677 - 455324 - | hypothetical protein nocM 456381 - 455701 - | ABC transporter membrane spanning protein (nopaline) nocQ 457096 - 456383 - | ABC transporter membrane spanning protein (nopaline) Avi_7508 457975 - 457157 - | ABC transporter substrate binding protein (amino acid) nocP 458790 - 458014 - | ABC transporter nucleotide binding/ATPase protein (nopaline) bioA 460212 - 458809 - | adenosylmethionine-8-amino-7-oxononanoate transaminase Avi_7513 460437 - 460913 + | transcriptional regulator AsnC family Avi_7514 461338 - 461610 + | transposase TERM 359 461873 - 461858 - f 77 -8.2 -4.08945 | overlap 461847 461844 461861 ATGACTGCTTGAAAA GCAGCG GCTG CGCCGC CTTGCAACCAATGCA TERM 360 461873 - 461861 - f 72 -10.5 -3.08211 | overlap 461858 461844 ACTGCTTGAAAAGCA GCGGC TGC GCCGC CTTGCAACCAATGCA Avi_7515 462221 - 463141 + | carboxyphosphonoenolpyruvate phosphonomutase (CPEP Phosphonomutase) TERM 361 464511 - 464483 - g 84 -13.2 -3.78034 | overlap 464500 CAGTGATACCAACAA GATCGTCCTGCA AATCA TGCAGGCCGATC TGGCCAAAGTCGGCA Avi_7516 463236 - 464933 + | ABC transporter substrate binding protein (oligopeptide) dppB 464930 - 465883 + | ABC transporter membrane spanning protein (dipeptide) dppC 465891 - 466778 + | ABC transporter membrane spanning protein (dipeptide) Avi_7520 466778 - 467803 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) moaD 467800 - 468792 + | ABC transporter nucleotide binding/ATPase protein Avi_7524 468870 - 470054 + | aromatic-amino-acid transaminase nocR 471931 - 470060 - | transcriptional regulator LysR family TERM 362 471148 - 471132 - G 71 -10.1 -3.5241 | overlap 471130 GATTCGCGATAAATA CGGCTGA TTC CCAGCCG ATTGGCCACCATGCT TERM 363 473408 - 473389 - g 83 -13.6 -3.57561 | opp_overlap 473384 473383 473381 GTTGAACTGGCGAAA TCCACCCG TATG CGGGTGGA TCGGGATATTCTGAT Avi_7527 472246 - 473613 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 364 474107 - 474087 - g 78 -11.2 -3.67188 | opp_overlap 474075, overlap 474085 ACCCAGCCCAAAACA CTGGCTGA TCTTG TCAGCCAG ACCGTTGGCCGAGCA Avi_7528 473610 - 474185 + | 3-polyprenyl-4-hydroxybenzoate decarboxylase TERM 365 474196 - 474224 + F 91 -9.6 -4.62471 | opp_overlap 474196 CTTGATCCATTGAAA CATTGGCCCCAA CGCTT TTGGGGCAGATG TTTTTCGCCGTTCAA TERM 366 474330 - 474314 - g 70 -2.2 -4.74453 | overlap 474315 TAATATATTGAAAAA TTGCGA AAATA TCGCAT CCAGATCTGTGCGCG TERM 367 474705 - 474729 + G 72 -9.9 -3.66178 | GTAAAATTCAACTGG GAGCGTCAGGC CAT GCCCGACACTC TTTCACCTTCGCAAG dppA 474294 - 475919 + | ABC transporter substrate binding protein (dipeptide) TERM 368 475962 - 475932 - f 72 -9.8 -3.28907 | gap 1, opp_overlap 475932 475933, overlap 475926 475930 475934 TAAGAAAATCCAATA GATCGGCGAACCG CAGGTT CGGTTCGCCAA-C GTTCTCCTCAAGGTG TERM 369 475961 - 475934 - f 85 -13.5 -3.19007 | opp_overlap 475933 475932, overlap 475926 475932 475930 AGAAAATCCAATAGA TCGGCGAACCG CAGGTT CGGTTCGCCAA CGTTCTCCTCAAGGT TERM 370 476308 - 476296 - gf 84 -10.5 -3.74693 | opp_overlap 476297 TCGCAGGCTAGCAAA GGCCG GAG CGGCC GCCATTCTGCTGGAA TERM 371 476764 - 476786 + GF 73 -3.4 -4.77036 | overlap 476727 AGGCTCGATGTACGG CATGATGG ATTTTGG CCGTCGTG TTTTTGCTGATCGCA Avi_7530 475985 - 476917 + | carboxyphosphonoenolpyruvate phosphonomutase TERM 372 477762 - 477783 + GF 70 -10.1 -3.17238 | gap 1, overlap 477768 GATTTCATTCAGGTG GC-GCGGGCC AAG GGCCTGCCGC TTGGCTATATCCTGT dppB 476889 - 478061 + | ABC transporter membrane spanning protein (dipeptide) TERM 373 478159 - 478195 + G 78 -9.3 -4.00038 | overlap 478153 GGCCAGATTGCGGCT GCCGGGTGCAAGCCCCT TTG AGCTGGTTGCGCTCGGC TTTCTGATACTGCTG dppC 478058 - 478978 + | ABC transporter membrane spanning protein (dipeptide) Avi_7533 478980 - 479993 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 374 480393 - 480358 - g 70 -11.8 -2.71712 | opp_overlap 480353, overlap 480357 CTGGGCGTTGCAAAG CCTGAGCGCGACAGGC GCGT GCGTGCGGCGCTCAAG GATGTGGGTTTTGAT Avi_7536 479986 - 480963 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 375 481031 - 481051 + G 72 -4.6 -4.7033 | gap 1, overlap 481031 481032 ATGTGCAATCTCTAT C-GCGCGCC GAAC GTCGCGCAG TTTTGTATTCGCTTG Avi_7537 480974 - 481495 + | hypothetical protein TERM 376 482065 - 482052 - g 74 -6.7 -4.48987 | TGTTCACAACGAAAA TGACG AATG CGTCA AGGTGTGGAGCGAAG Avi_7538 481492 - 482868 + | allantoinase protein amaB 482873 - 484132 + | N-carbamoyl-beta-alanine amidohydrolase hutH 484241 - 485854 + | histidine ammonia-lyase TERM 377 485855 - 485907 + F 89 -13.4 -3.39668 | opp_overlap 485860 485869 GGCCCTCTTCGCTGA GACGATCTGAACCATGGGCGAGGC ATTTA GCCTCGCTTACGGTTCAGTTGGCC TTGTAACGTTTACCG TERM 378 485902 - 485860 - f 76 -12.7 -2.62184 | opp_overlap 485855, overlap 485869 TCTTCGCTGAGACGA TCTGAACCATGGGCGAGGC ATTTA GCCTCGCTTACGGTTCAGT TGGCCTTGTAACGTT Avi_7541 485953 - 486312 + | transposase Avi_7543 488442 - 486526 - | hypothetical protein Avi_7544 489587 - 488445 - | von Willebrand factor type A (vWA) domain-containing protein aceF 493573 - 489584 - | dihydrolipoamide acetyltransferase TERM 379 490584 - 490608 + g 90 -7.9 -5.00884 | gap 1, overlap 490600 TCTTCCGGCGTCAGC TCGCGG-GCT TCGGCC AGCACCGCGA TTTTTTCACGGGCCT TERM 380 490638 - 490648 + g 70 -4 -4.58395 | overlap 490612 TTTTCCTGCAGGCCC TTGA ACT TCAA TTTTTCAGCGATGCC TERM 381 492818 - 492831 + g 81 -3.8 -5.14563 | opp_overlap 492818 TCTTAGGCACAACAG GTCG ACCGGG CGAC TTTTTTCATCGCCCC Avi_7548 495890 - 493596 - | hypothetical protein TERM 382 493684 - 493645 - G 88 -14.2 -3.5393 | gap 1, opp_overlap 493676 493676 ACCACTGCTTCCAAA GCCAGCGCCGCCGC-CTGA GTC TCTGTGCTGCTGCGCTGGC GCATCCATTGCATGG TERM 383 494757 - 494790 + g 74 -11.6 -3.62275 | gap 1, overlap 494759 494781 GTCGAGCAGTGGTGG CCGGCGGGTGCCGGC AGCAA GCCGGC-CGCGCCTG TTTCCGGTCATGGCT TERM 384 494759 - 494788 + g 79 -12.8 -3.39018 | gap 1, overlap 494757 494781 CGAGCAGTGGTGGCC GGCGGGTGCCGGC AGCAA GCCGGC-CGCGCC TGTTTCCGGTCATGG Avi_7549 496989 - 495898 - | moxR-like ATPase TERM 385 495954 - 495988 + g 75 -5.6 -4.66953 | ATGCTGCACCGGGCC GCTTCGACGCCTTCTG CTC CAGATAGCGTACAAGC TTTTTCAGGTCTTCC purA 498467 - 497289 - | adenylosuccinate synthetase TERM 386 498309 - 498255 - G 71 -7.1 -4.24413 | gap 1, overlap 498256 498304 GTTATGAATAAAGAA GCGCGA-CATGTAGGTAGTGGCACCC CGAA GGGCACCGCTGCCTACATGATGGAAC ACATGGCGTGTGCCA Avi_7551 499396 - 498464 - | hypothetical protein TERM 387 499157 - 499142 - G 76 -3.2 -5.0133 | gap 1, overlap 499144 GATGCTGGTAAAAAA CG-CGGG AAG CCCATCG CGAACCATATAGTCC TERM 388 499319 - 499329 + g 74 -8.2 -4.1899 | opp_overlap 499319 499318 499316 GCGACTGGAAAACAC CGCG TCC CGCG TTTTGCCTGCCGTAG Avi_7552 500414 - 499389 - | hypothetical protein TERM 389 499934 - 499944 + g 74 -8.2 -4.18018 | opp_overlap 499934 CACTCAGTCGGACAA GCCC AGC GGGC TTTTCCATCACCAGA TERM 390 500464 - 500494 + H 81 -6.2 -4.76041 | overlap 500466 ACGATATGCGCCTTC TGGACTTAGGCG TCAATAC CGTCTAAGTCTG TTTTTGCTGGCTATC TERM 391 500466 - 500492 + H 74 -8.8 -3.99327 | overlap 500464 GATATGCGCCTTCTG GACTTAGGCG TCAATAC CGTCTAAGTC TGTTTTTGCTGGCTA Avi_7553 500590 - 501249 + | hypothetical protein TERM 392 501797 - 501766 - T 100 -19.6 -3.65714 | opp_overlap 501773 501788, overlap 501754 AAACGAGACTTGAAA TCACGAAGGCCCGA AATT TCAGGCCTTCGTGA TAAGGCTATATCGGG Avi_7554 502559 - 501813 - | hypothetical protein vgrG 503466 - 505427 + | vgrG protein TERM 393 505675 - 505664 - g 100 -2.2 -6.11243 | AGTGAAGAAAAAAAA GAAG ATGT CTCC AGTAATTTCAGTCCA Avi_7558 505592 - 506602 + | hypothetical protein Avi_7559 506592 - 507974 + | phospholipase A1 Avi_7560 507987 - 509033 + | hypothetical protein Avi_7561 509109 - 509534 + | hypothetical protein Avi_7563 510786 - 510082 - | hypothetical protein Avi_7564 511328 - 510783 - | ECF family sigma factor Avi_7565 511533 - 512321 + | hypothetical protein TERM 394 512326 - 512362 + F 100 -18.8 -3.28924 | opp_overlap 512329 512335, overlap 512329 512335 CGGCGACCTGATACT GAAGAGCAAGGCGGGC GATGA GCCTGCCTTGCTCGTC TTGTGACGCGGCGTC TERM 395 512359 - 512329 - f 100 -16.9 -3.12999 | opp_overlap 512329 512326 512335, overlap 512335 CGACCTGATACTGAA GAGCAAGGCGGGC GATGA GCCTGCCTTGCTC GTCTTGTGACGCGGC TERM 396 512329 - 512359 + F 100 -19.1 -2.52623 | opp_overlap 512329 512335, overlap 512326 512335 CGACCTGATACTGAA GAGCAAGGCGGGC GATGA GCCTGCCTTGCTC GTCTTGTGACGCGGC tnp 512660 - 513391 + | transposase Avi_7569 514610 - 513930 - | hypothetical protein Avi_7570 515998 - 514622 - | glucose 6-phosphate dehydrogenase TERM 397 515036 - 515012 - G 71 -10.7 -3.53012 | opp_overlap 515025, overlap 514996 514997 GGGCGGGCGGCGAAA CCGCACGACAA CTT CTGTCGCACGG ACCGGCAGGTGCTTG TERM 398 515572 - 515582 + g 71 -8.2 -4.09685 | CGGAGGCAAGATCCC GCCC GAA GGGC TTTTCCACCATCAGC Avi_7571 517008 - 515995 - | 6-phosphogluconate dehydrogenase TERM 399 516875 - 516854 - G 77 -7.9 -4.37658 | overlap 516855 AATTTGGCGAGAAAA TCGGCGTAG CTCG CCGCGCCGA CAGCGCCTTCGGCCT Avi_7572 519432 - 517027 - | glucan 1,4-alpha-glucosidase Avi_7573 521025 - 519622 - | transcriptional regulator GntR family Avi_7575 521364 - 521846 + | hypothetical protein TERM 400 521880 - 521897 + F 85 -14.1 -2.71144 | TCAGCGCGCCCGGAA GGCGGGG CCAG CCCCGCC TCCTTCACCCCAATC Avi_7576 521926 - 522969 + | amidohydrolase Avi_7577 523043 - 524014 + | Biotin synthase-related enzyme TERM 401 524117 - 524134 + G 75 -5.5 -4.56597 | TTCGTCGGGATGTCT TCTGCCG CGAA CAGCAGA TTTTTGAAAGCGACG Avi_7578 524011 - 524553 + | GCN5 family N-acetyltransferase Avi_7579 524556 - 525542 + | selenophosphate synthetase-related protein Avi_7580 525563 - 526696 + | WbdA; mannosyl transferase A Avi_7582 526698 - 526976 + | hypothetical protein TERM 402 527281 - 527269 - g 72 -4.7 -4.56597 | opp_overlap 527269 TCGCTTCGTCAAAAA GGTCG ATG CGCCC GTTTTAGAAGGCACC Avi_7583 526988 - 528259 + | flavin-containing monooxygenase Avi_7584 528320 - 529129 + | yype IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV) B subunit TERM 403 529977 - 529966 - g 71 -7.2 -4.19371 | opp_overlap 529974 CAAACCGTCAACAAA GGCC TCGA GGCC GTCGGCATTTCCAGC Avi_7585 529444 - 530520 + | Catalase TERM 404 530553 - 530570 + G 81 -3.3 -5.32699 | overlap 530552 ACCATTTGGAGGCAT GGCTGTT TTAA AGCCGCC TTTTTTCCTCTTTAA TERM 405 530616 - 530603 - g 79 -5.2 -4.72007 | TCCCATCAAAAGAAA GGCC CGCCAT GGCC GACCCTATCGAGAAC fdhF 530551 - 532887 + | formate dehydrogenase H alpha subunit TERM 406 532934 - 532884 - T 70 -10.6 -2.78798 | overlap 532883 AGTCCGGATCGAAAC CTAGACTTTGCCAGGGAAAACCGG GTT CCACTTTTCCCTGATAAACTCTAA CGAACCAGCATCGAA Avi_7587 533443 - 532931 - | acetyltransferase Avi_7588 534329 - 533454 - | hypothetical protein Avi_7589 535175 - 534339 - | hypothetical protein TERM 407 535118 - 535131 + g 71 -8.1 -4.07885 | CCGCCTTCCAGTTTT CGACG AATA CGTCG TTTTGAGAGCCGATG TERM 408 535229 - 535275 + r 95 -13.7 -3.54424 | gap 1, overlap 535233 535239 AAGGCGCGGAGCACC GCAGGGCGGGGTCGGGCGCACC AAGG GGTGCGCCCGACTT-GCATTAC TTTGCCGCCATCACA TERM 409 535233 - 535271 + r 100 -15.3 -3.51411 | gap 1, overlap 535229 535239 CGCGGAGCACCGCAG GGCGGGGTCGGGCGCACC AAGG GGTGCGCCCGACTT-GCA TTACTTTGCCGCCAT TERM 410 535239 - 535266 + r 100 -22.8 -3.26596 | overlap 535233 535229 GCACCGCAGGGCGGG GTCGGGCGCACC AAGG GGTGCGCCCGAC TTGCATTACTTTGCC TERM 411 535291 - 535309 + r 77 -5.9 -4.62069 | opp_overlap 535291, overlap 535292 TTTGCCGCCATCACA CCCGCGA CATGC TCGCGGA TTTTTGGCATGGCAG Avi_7590 536615 - 535272 - | ABC transporter substrate binding protein (sugar) TERM 412 536571 - 536614 + g 83 -13.3 -3.5393 | gap 2, overlap 536578 AAGGTGGAGTGGTCT TGACTTTCGGACCTGCCCGGT GGCC GCCGGGCAGGTCCGTA--TCA TTTGACGCCGGTCAT TERM 413 536578 - 536609 + g 100 -23.8 -3.00525 | overlap 536571 AGTGGTCTTGACTTT CGGACCTGCCCGGT GGCC GCCGGGCAGGTCCG TATCATTTGACGCCG Avi_7591 537439 - 536612 - | ABC transporter membrane spanning protein Avi_7592 538359 - 537439 - | ABC transporter TERM 414 537926 - 537878 - G 93 -5.2 -5.42259 | gap 1 CCATCGGCAAAAAAA TCGAG-AGCCGGTAAGCCCAATG CGTC CAACAGGCTTGCCAGCGGCCCGA TATGGCCATTGAGCA Avi_7593 539536 - 538343 - | ABC transporter nucleotide binding/ATPase protein Avi_7595 539865 - 540536 + | transcriptional regulator TetR family TERM 415 540643 - 540590 - f 78 -7.6 -4.41494 | gap 1, opp_overlap 540592 540595, overlap 540591 540592 540594 GACTGCGAAGCAAAA TTGAGCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGG-TCTT TGTTTTACGCATTTG TERM 416 540642 - 540591 - f 74 -11.1 -3.24414 | gap 1, opp_overlap 540592 540595, overlap 540590 540592 540594 ACTGCGAAGCAAAAT TGAGCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGG-TCT TTGTTTTACGCATTT TERM 417 540592 - 540641 + F 100 -15.3 -4.66535 | gap 1, opp_overlap 540592 540591 540590 540594, overlap 540595 CTGCGAAGCAAAATT GAGCCTAGATCATTTCCGCGTTTT GTT GAATCGCTGAAATGATCTAGG-TC TTTGTTTTACGCATT TERM 418 540641 - 540592 - f 89 -14.6 -2.54166 | gap 1, opp_overlap 540592 540595, overlap 540591 540590 540594 CTGCGAAGCAAAATT GAGCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGG-TC TTTGTTTTACGCATT TERM 419 540640 - 540594 - f 85 -13.9 -2.80479 | opp_overlap 540592 540595, overlap 540592 540591 540590 GCGAAGCAAAATTGA GCCTAGATCATTTCCGCGTTT TGTTG AATCGCTGAAATGATCTAGGT CTTTGTTTTACGCAT TERM 420 540595 - 540639 + F 100 -18.1 -3.93868 | opp_overlap 540594 540592 540591 540590, overlap 540592 CGAAGCAAAATTGAG CCTAGATCATTTCCGCGTTTT GTT GAATCGCTGAAATGATCTAGG TCTTTGTTTTACGCA prxC 540758 - 541576 + | non-heme chloroperoxidase Avi_7599 542314 - 541652 - | hypothetical protein pepQ 543740 - 542316 - | proline dipeptidase Avi_7601 544590 - 543769 - | ABC transporter membrane spanning protein Avi_7602 545410 - 544583 - | ABC transporter membrane spanning protein TERM 421 545441 - 545468 + r 72 -8.5 -3.71848 | gap 1, opp_overlap 545444, overlap 545444 GGCGACGAGAGCATC GAACTG-GCGGA TCCAT TCCGCACGGTTC TTGTTGATCGCCGCC Avi_7603 546460 - 545420 - | ABC transporter substrate binding protein Avi_7604 547722 - 546481 - | ABC transporter nucleotide binding/ATPase protein TERM 422 547087 - 547064 - G 75 -10.2 -3.7108 | ACCTGCAGATCGAAA CGAAGCGCCC TGTC GAGCGCCCCG AACGGTTCATCGAGC Avi_7606 548168 - 549157 + | ABC transporter substrate binding protein (amino acid) Avi_7608 549161 - 550033 + | ABC transporter membrane spanning protein (amino acid) TERM 423 550034 - 550013 - f 88 -10.9 -4.03234 | gap 1, overlap 550015 GCCGGTGCACAGAAA GATCAGCCGC GAC GCGGCTGA-C GCACTGGCCGCTCGA TERM 424 550033 - 550015 - f 100 -14.6 -3.61232 | overlap 550013 CGGTGCACAGAAAGA TCAGCCGC GAC GCGGCTGA CGCACTGGCCGCTCG TERM 425 550575 - 550555 - g 71 -8.1 -4.08692 | opp_overlap 550556 550562 GAAGGTGCTGCAAAA GCTGGCGCC CGT GGCGCGTGC CAATGGTGTTCACCT Avi_7610 550112 - 551242 + | hypothetical protein TERM 426 551349 - 551398 + F 74 -8.3 -3.87149 | gap 4, opp_overlap 551357 AAGATCTGGATTTTG GTATTACAGCG-CC---GTGCGTTT TATA AAACGCACAAAGGACGCTGTAATAC TTTAAATTTAATGCA TERM 427 551421 - 551448 + F 72 -10 -3.32844 | opp_overlap 551418 551417, overlap 551422 TTAATGCATAATTTT CTCCTTAAATCG ATTC CGATTTAAGGAA TTATGCAGTAAGCGA TERM 428 551422 - 551447 + F 81 -13.5 -2.59564 | opp_overlap 551418 551417, overlap 551421 TAATGCATAATTTTC TCCTTAAATCG ATTC CGATTTAAGGA ATTATGCAGTAAGCG Avi_7611 551525 - 552277 + | transcriptional regulator GntR family Avi_7612 553261 - 552863 - | nikR protein TERM 429 553291 - 553301 + H 95 -6.8 -5.27923 | overlap 553283 TTGATGCTGATGTAT GGTG TAT CACC TTTTTTATCCGCTTC TERM 430 554927 - 554915 - g 79 -6.9 -4.56597 | overlap 554919 TGCCGTTGCCAAAAA GGAGC TTG GCCCC ATTCCGTTTGGGGCG nikA 553410 - 554990 + | nickel ABC transporter periplasmic nickel-binding protein nikB 554994 - 555938 + | nickel ABC transporter permease subunit NikB nikC 555935 - 556810 + | nickel ABC transporter permease subunit NikC nikD 556807 - 557595 + | nickel import ATP-binding protein NikD nikE 557592 - 558386 + | nickel import ATP-binding protein NikE Avi_7619 558560 - 558955 + | hypothetical protein fnrN 559070 - 559768 + | transcriptional activator Crp family Avi_7622 559787 - 561076 + | ABC transporter substrate binding protein (iron) Avi_7623 561073 - 562137 + | ABC transporter membrane spanning protein (iron) Avi_7625 562134 - 562919 + | ABC transporter Avi_7626 562916 - 563839 + | hypothetical protein sco1 563836 - 564495 + | electron transport protein TERM 431 564588 - 564600 + G 78 -6.2 -4.63527 | ACGCCACCCCCCTCA CCGG ATGGA CCGG TTTTTGCCATGCTGG TERM 432 564647 - 564660 + G 74 -8.1 -4.11216 | CCTGCTGGATCTGCT CGGTC CGAT GACCG TTTTCAACATCACCA Avi_7628 564492 - 565277 + | intracellular protease/amidase moaA 566639 - 565611 - | molybdenum cofactor biosynthesis protein A Avi_7630 567988 - 566633 - | hypothetical protein TERM 433 567018 - 567004 - G 76 -12.8 -3.12351 | overlap 566980 CCTCGTCATAGGCAA CGCCCG GAA CGGGCG CAGACCGTCTGCCGA fdxA 568290 - 567985 - | ferredoxin Avi_7633 570489 - 568363 - | reductase Avi_7634 570675 - 571589 + | transcriptional regulator AraC family TERM 434 572081 - 572062 - f 72 -4.3 -4.62069 | opp_overlap 572062, overlap 572064 TTGCTATCCCAAAAA TCCGCTT CCAGAT AAGCGAA TTTGGCGCATTTCTT Avi_7635 572212 - 573078 + | AraC-type DNA-binding domain-containing protein TERM 435 573122 - 573090 - T 100 -16.3 -3.67878 | opp_overlap 573082 573111, overlap 573091 ATGACCGCAACAGAA CCGCAGCTCTGCCGC TGT ACGGCAAAGCTGCGC TAGGCTTGATTATCG TERM 436 573121 - 573091 - T 100 -19.8 -2.80245 | opp_overlap 573082 573111, overlap 573090 TGACCGCAACAGAAC CGCAGCTCTGCCGC TGT ACGGCAAAGCTGCG CTAGGCTTGATTATC Avi_7637 574389 - 573139 - | Acyl-CoA dehydrogenase TERM 437 573618 - 573629 + g 70 -4.4 -4.43477 | opp_overlap 573618 CGGTCCAGGCGAAAT TCGT GGAA ACGA TTTTGATTCCGTCGC TERM 438 576846 - 576877 + G 83 -13.8 -3.33696 | gap 1 AAGGTTATATCTGTT CTCCGCCAC-TCCGA GAG TCAGACGTGGCGGAG TTCATTGCGCGAACG Avi_7641 574970 - 576937 + | hypothetical protein Avi_7643 578740 - 577013 - | sensory methylation accepting chemotaxis protein TERM 439 579736 - 579748 + G 71 -10.5 -3.53343 | TTTTGGTCAGATCTG GGCCG ATC CGGCC TTTCCCAAAACCCTT Avi_7645 579230 - 580588 + | hypothetical protein TERM 440 580855 - 580833 - g 71 -10.5 -3.53563 | opp_overlap 580833, overlap 580850 ACAGCCTTCGCCAAA CGCTCGTCG ACATA CGACGGGCG TTTGGCCCCTATCAA TERM 441 580833 - 580855 + G 81 -12.7 -3.56643 | opp_overlap 580833 580850 ACAGCCTTCGCCAAA CGCTCGTCG ACATA CGACGGGCG TTTGGCCCCTATCAA Avi_7646 580634 - 582223 + | TPR repeat-containing protein TERM 442 582573 - 582523 - f 83 -5.3 -5.10461 | gap 1, opp_overlap 582523, overlap 582527 TTTACTGAATAAAAA TGCAGCCTGGATGGGGCAAGATCG GTGC CGGTCATGCCCCATCCT-GCAAAA ATTTTTCATTTAAAA TERM 443 582569 - 582527 - f 78 -12.7 -2.92714 | gap 1, opp_overlap 582523, overlap 582523 CTGAATAAAAATGCA GCCTGGATGGGGCAAGATCG GTGC CGGTCATGCCCCATCCT-GC AAAAATTTTTCATTT TERM 444 582670 - 582653 - f 90 -9.1 -4.57837 | overlap 582654 ACAGGCCTTCAAAAA CGGCTCC ACAT GGAGCCA GCTAGGCCCAGCTTA TERM 445 582669 - 582654 - f 72 -10.4 -3.3422 | overlap 582653 CAGGCCTTCAAAAAC GGCTCC ACAT GGAGCC AGCTAGGCCCAGCTT TERM 446 584661 - 584686 + G 83 -14.7 -3.14132 | overlap 584663 TTGCCATGGCAATGT TTCCGAGGCGG CGCG CCGCCTCGGTA TTGATCGCACCACAA TERM 447 584663 - 584684 + G 91 -17.3 -3.13403 | overlap 584661 GCCATGGCAATGTTT CCGAGGCGG CGCG CCGCCTCGG TATTGATCGCACCAC acoR 582859 - 584745 + | transcriptional regulator TERM 448 585476 - 585510 + G 86 -6.2 -4.96848 | CATCGGCATGCTGAC GTTGCTTGCCGCGCGC GCG GCGGGCGCCACCCAGC TTTTTGTGTCCGACC Avi_7649 584910 - 585983 + | zinc-binding dehydrogenase TERM 449 587256 - 587290 + G 70 -4.1 -4.67353 | overlap 587257 CTCGGAAAGGGCGGT GCAGGGCGGCATGAC CACGC GTAAGGCCGACCTGA TTTTTGCATCCCTGC Avi_7650 586099 - 587901 + | flavin-containing monooxygenase TERM 450 587943 - 587903 - T 100 -16.1 -3.5393 | opp_overlap 587905 587906 587908, overlap 587904 ATCATCTGTCGTAAA GCCCATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATGATT GGTCCTGTAAGGTCG TERM 451 587942 - 587904 - T 100 -19.6 -2.72144 | opp_overlap 587905 587906 587908, overlap 587903 TCATCTGTCGTAAAG CCCATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATGAT TGGTCCTGTAAGGTC TERM 452 587905 - 587941 + T 100 -23.1 -3.24925 | opp_overlap 587904 587903, overlap 587906 587908 CATCTGTCGTAAAGC CCATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATGA TTGGTCCTGTAAGGT TERM 453 587906 - 587940 + T 100 -26.6 -2.54634 | opp_overlap 587904 587903, overlap 587905 587908 ATCTGTCGTAAAGCC CATAGGGGGCGCCAGC CTG GCTGGTGCCCCCTATG ATTGGTCCTGTAAGG TERM 454 587908 - 587938 + T 100 -23.4 -2.80988 | opp_overlap 587904 587903, overlap 587906 587905 CTGTCGTAAAGCCCA TAGGGGGCGCCAGC CTG GCTGGTGCCCCCTA TGATTGGTCCTGTAA menG 588877 - 588203 - | demethylmenaquinone methyltransferase TERM 455 589071 - 589054 - g 81 -4.1 -5.10461 | opp_overlap 589069, overlap 589055 TGGATGTAACAAAAA TGCGC TATTTTGC GCGCA TTGCAGAGCTAGGCT Avi_7653 589053 - 589952 + | Transcriptional regulator accB 590128 - 590547 + | acetyl-CoA carboxylase biotin carboxyl carrier protein accC 590544 - 591917 + | acetyl-CoA carboxylase biotin carboxylase Avi_7656 591914 - 592357 + | hypothetical protein Avi_7657 592357 - 593067 + | hypothetical protein Avi_7658 593064 - 594062 + | hypothetical protein Avi_7659 594078 - 594845 + | hypothetical protein TERM 456 595927 - 595915 - g 78 -9.1 -4.11216 | GCCTGATTGGCAAAA CCACC AAG GGTGG CCGCAAGATTGAAAA aatA 594894 - 596108 + | aspartate aminotransferase A TERM 457 596165 - 596127 - T 95 -11.9 -4.42386 | gap 1, overlap 596130 TGGCCATGTAGAAAA TAT-TGCACCATGCATCC CAAC GGATGCATGGCGCGCATA AACCGCTCTAATTCT TERM 458 596161 - 596130 - T 95 -15.2 -2.88788 | overlap 596127 CCATGTAGAAAATAT TGCACCATGCATCC CAAC GGATGCATGGCGCG CATAAACCGCTCTAA nac 597078 - 596173 - | transcriptional regulator LysR family Avi_7662 597318 - 598070 + | short-chain dehydrogenase Avi_7663 598067 - 598774 + | ABC transporter membrane spanning protein (amino acid) Avi_7664 598771 - 599523 + | ABC transporter membrane spanning protein (amino acid) TERM 459 599800 - 599810 + G 71 -6.8 -4.1891 | overlap 599809 TCAATGCCCTGCGCA GCCA GAT TGGC TTTGTATTCCAGAGC Avi_7665 599529 - 600296 + | ABC transporter nucleotide binding/ATPase protein Avi_7667 600370 - 601209 + | ABC transporter substrate binding protein (amino acid) TERM 460 601284 - 601241 - f 100 -16 -3.05816 | opp_overlap 601242 601245 TGATTGGGTATGTAA TTCTCCTTCACCGGCATGAC ATCC GTCACGCCGGTGAAGGTGCT TTCGCAAAGATTCCA TERM 461 601242 - 601283 + F 100 -17.3 -3.54459 | opp_overlap 601241, overlap 601245 GATTGGGTATGTAAT TCTCCTTCACCGGCATGAC ATCC GTCACGCCGGTGAAGGTGC TTTCGCAAAGATTCC TERM 462 601245 - 601280 + F 100 -22 -2.90615 | opp_overlap 601241, overlap 601242 TGGGTATGTAATTCT CCTTCACCGGCATGAC ATCC GTCACGCCGGTGAAGG TGCTTTCGCAAAGAT Avi_7669 601422 - 601793 + | transposase TERM 463 602133 - 602165 + G 78 -11.3 -3.6608 | opp_overlap 602131 AAGACCCATTGAACT TTCTCGCCGCTGTCA AAT TGGCAGCAGCAAGAA TTTGGATCAGATCGT Avi_7671 601790 - 602185 + | transposase Avi_7673 602615 - 602286 - | methyl-accepting chemotaxis protein Avi_7674 604411 - 602711 - | oxidoreductase Avi_7675 605730 - 604414 - | hypothetical protein Avi_7676 607205 - 605730 - | FAD dependent oxidoreductase Avi_7677 607733 - 608221 + | hypothetical protein TERM 464 608236 - 608219 - f 88 -5.5 -5.28176 | GCGATCCAGAAAAAA TGATGCC GACC GGCTTCA TGGAATTGGGAGCGA TERM 465 608281 - 608299 + F 81 -9 -4.11216 | opp_overlap 608278 608281 608283 GTGAAGTAAATATTA TAGTCAAT CTA ATTGACTA TTTTCAAAATGCCGA TERM 466 608406 - 608425 + F 81 -8.6 -4.39166 | GTATGATGCCGCGCC CTTTGGCG CGGG CGCTAAAG TTTTGATCTGTCCCC TERM 467 609177 - 609187 + G 71 -8.2 -4.08945 | opp_overlap 609163, overlap 609184 TCGCCCAATTCCGGT CGCG TGC CGCG TTTTGAACCCGTCGT TERM 468 609355 - 609365 + G 76 -3.2 -5.00616 | GCCTCATTCCGGCCC CGCT CGC AGTG TTTTTTGAAAAAAAG Avi_7679 608583 - 609776 + | Permeases of the major facilitator superfamily Avi_7680 609978 - 611372 + | porin B Avi_7681 612105 - 611605 - | CbaR Avi_7682 613373 - 612135 - | ferredoxin reductase TERM 469 613126 - 613162 + g 80 -4.4 -4.90778 | gap 1, opp_overlap 613136, overlap 613148 GTTCGCGTCACCCGA TCGATATGAATGGCCGG GTCC CCGGCTA-TCAGGCCGA TTTTGTTTCGGTGAA Avi_7683 614919 - 613702 - | cytochrome P450 hydroxylase Avi_7685 615505 - 615296 - | transposase TERM 470 615801 - 615776 - R 100 -16.1 -3.89346 | opp_overlap 615776 TCGTCATCGCACAAA GAGCGCGGCCC TTTC GAGCCGCGCCC ATAACGATGTTAAGC attK 617247 - 615820 - | NAD-dependent succinate aldehyde dehydrogenase TERM 471 616420 - 616447 + g 74 -7.8 -4.12942 | GACGCAGAATTGGGC GCTGTTCTGG AAGGCCGC CCAGAATAGC TTTTCGGCAGTTTCC fadD 618811 - 617309 - | long-chain-fatty-acid-CoA-ligase TERM 472 618922 - 618947 + r 77 -11.8 -3.25073 | overlap 618921 TGCAGGCCTCCCTCG CAGCCGCCCG CTCCTC CAGGCGGCTG TCTTGATCTTCGCAA Avi_7688 620067 - 619051 - | transcriptional regulatory protein TERM 473 619983 - 620008 + g 72 -6 -4.26903 | opp_overlap 619983, overlap 619973 619973 619978 TGCCTGCCGCGAGAA GCGCTGGCTG CTCTGT CATCCCGCGC TTTTGATAGGCTAAA TERM 474 620425 - 620435 + G 71 -8.2 -3.96148 | GATTGGTCAGCTTGC GGCC CAC GGCC TTTATGATGGCGAAG TERM 475 620803 - 620827 + G 72 -8.6 -3.85698 | GAGCGATGAGACGGT GATTGTGCGC GAACA GGGCACAATC TTTCTCGCAGGCCCG TERM 476 621278 - 621298 + G 72 -4.6 -4.57341 | overlap 621240 621290 ATTGAGCTTTGCGTT CAGCGCCG TATTC CGCTGCTG TTTTTGCAAAACATT mccB 620258 - 621793 + | 3-methylcrotonoyl-CoA carboxylase beta subunit TERM 477 621960 - 621979 + G 78 -6.4 -4.56597 | GTGCGCGTCCTTGTG CTGGCC GGTCGTGG GGCCAG TTTTTCCGCAGGCGC TERM 478 622059 - 622045 - g 79 -12.8 -3.21276 | opp_overlap 622054 622056, overlap 622043 CCCTTGCGGACAATA CGGCGG ATG CCGCCG CCATGGGGCGGATGT TERM 479 622583 - 622563 - g 72 -4.6 -4.56597 | GCCTTTCTGGAAAAA CGCAAACC CGGCT GGATCGCG GATCGGAAAGAAGGG Avi_7690 621801 - 622601 + | Enoyl-CoA hydratase/isomerase family protein TERM 480 624280 - 624305 + G 71 -11.3 -3.31726 | gap 1, overlap 624278 TTACGACGCGACGAT CATGATCGATGG GAA CCATCG-TCATG TGTTCTATACCGGAC accC 622613 - 624601 + | acetyl-CoA carboxylase biotin carboxylase hmgL 624612 - 625535 + | hydroxymethylglutaryl-CoA lyase Avi_7693 626932 - 626117 - | transcriptional regulator MerR family argD 627075 - 628355 + | acetylornithine aminotransferase Avi_7695 628708 - 628382 - | hypothetical protein TERM 481 628414 - 628448 + g 87 -18 -2.62184 | GAGTTGGCTTAGGCA TCGGACCGAAAAGTGG GAA CCGGTTTTCGGTCCGA TGCTCTAGGGCGAGC TERM 482 628604 - 628577 - G 88 -13.6 -3.66288 | opp_overlap 628583 CACTTCGGAATAGAA TGAGAATGCCGA AGCA TCGACATTCTCA ACACTCGCGAAATCG Avi_7698 629087 - 630115 + | IS1111A/IS1328/IS1533 family transposase orfB 631296 - 630217 - | IS3 family transposase TERM 483 630695 - 630718 + g 78 -9.6 -4.05788 | gap 1, overlap 630704 TCGTTCGAACGGGTG GCTGCGGTGCG GTG CG-ATCGCAGC TTTGCTTTGACGCGC TERM 484 630704 - 630735 + g 80 -9.4 -4.12599 | gap 1, overlap 630695 630730 CGGGTGGCTGCGGTG CGGTGCGATCGCAGC TTT GCTTTGA-CGCGCCG TTTTGGCACCTTGTT SEQUENCE gi|222080117|ref|NC_011982.1| Agrobacterium vitis S4 plasmid pTiS4, complete sequence (length 258824) TERM 1 621 - 610 - g 73 -3 -4.78107 | GATGACGAGCAAAAA TTCA TCTC TGAA GTCATCCAGCCCACC repA 136 - 1251 + | replication protein A repB 1336 - 2331 + | replication protein B TERM 2 2374 - 2347 - f 91 -2.7 -5.46706 | gap 2, opp_overlap 2366, overlap 2341 ACCGCAAAAGAAAAA GGCCCCCAAACGG TAAA CCGT--GGAAGCC TCTCTCGTATCTCTC repC 2487 - 3731 + | replication protein C TERM 3 4693 - 4704 + G 70 -4.4 -4.47707 | TCGGCAGCTATTGCG GTGT GATT ACAC TTCTTTTTGGTCCCG Avi_8003 3966 - 5258 + | hypothetical protein Avi_8004 6183 - 5296 - | hypothetical protein Avi_8005 6341 - 7270 + | hypothetical protein Avi_8006 8493 - 7357 - | integrase protein TERM 4 8539 - 8513 - H 100 -13.9 -4.89852 | CTATAGTGACAAAAA CGTCCGATAAT GCAAG ATTATCGGACG TAATAACACGACGAC TERM 5 8596 - 8560 - H 72 -10.9 -3.0371 | overlap 8581 ACACGACGACAGACA GTGCGGTTTATGTCG AAAGAAG CGGCTTAAACCGCAC ACCCGATTTACACTC TERM 6 9253 - 9267 + H 77 -8.5 -4.07687 | overlap 9253 ACGAGGCCGGGTTCG GCCGG GCGAG CCGGC TTTTCCAAAAGCCAT TERM 7 9613 - 9627 + G 75 -10 -3.72893 | opp_overlap 9611 AATCAAAAGAATCCC CAGGAC GAT GTCCTG TTTGATCGGGAGCTG Avi_8008 9562 - 10257 + | hypothetical protein Avi_8010 10919 - 10347 - | hypothetical protein Avi_8011 11011 - 11868 + | transposase protein TERM 8 12203 - 12218 + G 82 -6.1 -4.77567 | ATTGGCTCTGGCGCG CCGTC GATCAG GACGG TTTTGTTCTCGACGT Avi_8012 11908 - 12624 + | transposase protein Avi_8013 12803 - 13006 + | hypothetical protein Avi_8014 13035 - 13523 + | hypothetical protein Avi_8015 13818 - 14705 + | Ku protein Avi_8016 14709 - 15530 + | Ku protein ligD 18275 - 15594 - | DNA ligase D TERM 9 18211 - 18226 + g 83 -8.2 -4.65916 | overlap 18223 TTCACCCCGACTTCA CCGCTG GGCT CGGCGG TTTTCTTGAAGTCGC Avi_8018 19502 - 18618 - | transposase Avi_8019 19976 - 20953 + | dehydrogenase/flavin-dependent oxidoreductase protein Avi_8020 21013 - 22674 + | trehalose synthase Avi_8022 23997 - 23158 - | hypothetical protein TERM 10 23852 - 23864 + g 75 -10.5 -3.6445 | opp_overlap 23851 23850 TCCAGATCACGAACG CGGCG GAG CGCCG TTTCCCAATTCTTCT TERM 11 24337 - 24352 + H 81 -6.1 -4.77567 | ATTGGCTCTGGCGCG CCGTC GATCAG GACGG TTTTGTTCTCGACGT TERM 12 24400 - 24379 - H 71 -9.3 -3.53091 | opp_overlap 24384 ACGTGCTGGTGCAAA GCCGCCGCG ATGC CAAGGCGGC AAAGCGTTTGATGCG TERM 13 26309 - 26291 - g 72 -5.2 -4.42464 | opp_overlap 26291, overlap 26293 AAGCCGCCAAAGAAA TCGCCGTT CTT ATCGGCAA TTCTTCAAATGCGGT Avi_8025 24955 - 26739 + | sensory methylation accepting chemotaxis protein TERM 14 26844 - 26874 + T 71 -9.6 -3.53811 | opp_overlap 26844 26845, overlap 26845 ACTTTGTCTGCAAAA TCGCACCGAGAGTG GGG CATCCTCGGCGCGG TTTCACAGAGATGAC TERM 15 26874 - 26844 - T 81 -9.6 -4.07687 | opp_overlap 26844 26845, overlap 26845 ACTTTGTCTGCAAAA TCGCACCGAGAGTG GGG CATCCTCGGCGCGG TTTCACAGAGATGAC TERM 16 26845 - 26873 + T 70 -10.9 -2.72144 | opp_overlap 26844 26845, overlap 26844 CTTTGTCTGCAAAAT CGCACCGAGAGTG GGG CATCCTCGGCGCG GTTTCACAGAGATGA TERM 17 26873 - 26845 - T 83 -13.1 -3.04398 | opp_overlap 26845 26844, overlap 26844 CTTTGTCTGCAAAAT CGCACCGAGAGTG GGG CATCCTCGGCGCG GTTTCACAGAGATGA TERM 18 27042 - 27059 + T 75 -11.3 -3.09516 | CAACGTCAGCGCGGA GCCTCCT TTCT AGGAGGC TTACATCGTACCGCC Avi_8027 27371 - 27093 - | HNS-type DNA binding protein TERM 19 27503 - 27517 + H 85 -7.1 -4.82901 | GATTCGCGGACTTTT GCGGT ATTGC ACCGC TTTTTATCGACAACC nolR 28128 - 28448 + | transcriptional regulator ArsR family TERM 20 28870 - 28891 + F 71 -9.3 -3.53091 | opp_overlap 28864 CGCATCAAACGCTTT GCCGCCTTG GCAT CGCGGCGGC TTTGCACCAGCACGT TERM 21 28933 - 28918 - f 81 -6.1 -4.77567 | ACGTCGAGAACAAAA CCGTC CTGATC GACGG CGCGCTAGAGCCAAT TERM 22 29324 - 29349 + F 71 -9.1 -3.5032 | overlap 29322 ACTCGTCCTTTCCGA TTTGGTCCAAG ATGA TTTGGACCGAA TATTTGCTCTCGAAG Avi_8032 29340 - 30140 + | potential exonuclease TERM 23 30333 - 30310 - T 70 -6 -4.18506 | gap 1, opp_overlap 30323, overlap 30311 CCAGTTCCAAAACAA TC-CGCCGC GCCGCCT GCGGCGTGA CGTCCAGTGTCTTCG tnp 31265 - 30726 - | transposase TERM 24 31791 - 31772 - R 70 -5.7 -4.36914 | gap 1, opp_overlap 31783 31788 31790 GGCGGCGTGACAAAA GAGC-GGC CAAGC GCCTGCTC GTGGCGTTAATGAAG TERM 25 32011 - 31954 - R 81 -9.1 -4.11216 | gap 1, opp_overlap 31960, overlap 31955 CTGCCATTTCGAAAA CGGGAACGAACCA-TGCAGGGCCACCGA TCC CCGGGAGCATTGCAACGGTTCGTTTCCA TGCACTCCGCTACTC Avi_8042 33272 - 32520 - | transcriptional regulator AraC family TERM 26 33638 - 33653 + G 82 -6.1 -4.77567 | ATTGGCTCTGGCGCG CCGTC GATCAG GACGG TTTTGTTCTCGACGT Avi_8044 33343 - 34059 + | transposase traG 35393 - 34845 - | Ti-type conjugative transfer system protein TraG TERM 27 35231 - 35213 - G 70 -4.5 -4.43012 | gap 1 ACGCGAACAGGAAAA GCGTGCCG ATCG CAGC-CGC GGTCGCATAGGGCAG traD 35595 - 35380 - | conjugal transfer protein Dtr system traC 35896 - 35600 - | conjugal transfer protein Dtr system TERM 28 39017 - 38979 - R 100 -15.4 -3.53012 | GTTCCCGCCCTGAAA CGCGATCTCGCGCA ATATCTGCGGA TGCGCGAGACCGCG ACGCAACGCGTTGCG TERM 29 39431 - 39403 - R 95 -12.3 -4.2573 | overlap 39392 GAAACAAGCTGAAAA CCTGCGGCTGACG CAG CGCCAGTCGCCGG TGATGAAGCAGTGAA Avi_8059 41259 - 40885 - | transposase TERM 30 42082 - 42107 + r 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 31 43840 - 43803 - R 80 -12 -3.27525 | gap 1 CCTGGGCAAAGCTAA GGCCCGGATTGGCTCGC TTCTG GCTAG-CTATCCGGGCC TCCTAGATGCATGAA Avi_8066 44956 - 44012 - | hypothetical protein exsI 45393 - 44953 - | transcriptional regulator Avi_8068 47018 - 45390 - | GGDEF family protein TERM 32 47808 - 47820 + H 78 -9.1 -3.90112 | opp_overlap 47796 AAACCGAGTACGCCC GGTCC CAT GGACC TTTAGTTCGGAGGAA Avi_8070 47843 - 48883 + | transposase TERM 33 49621 - 49642 + T 71 -9.3 -3.53091 | opp_overlap 49615 CGCATCAAACGCTTT GCCGCCTTG GCAT CGCGGCGGC TTTGCACCAGCACGT TERM 34 49684 - 49669 - T 81 -6.1 -4.77567 | ACGTCGAGAACAAAA CCGTC CTGATC GACGG CGCGCCAGAGCTAAT Avi_8072 49979 - 49695 - | transposase Avi_8073 51265 - 49976 - | hypothetical protein Avi_8074 51682 - 51395 - | transcriptional regulator Avi_8075 52392 - 51718 - | hypothetical protein TERM 35 52138 - 52090 - G 88 -14.4 -3.55761 | gap 1, opp_overlap 52085 52092, overlap 52091 52094 CATCGATGCTCCAAA TGTATTCCATCTGTGGAATAT TTCAAGCG ATATTCCACAGATGGAATA-A CTCGATCGCTTTCGA TERM 36 52138 - 52091 - G 86 -16 -2.73243 | opp_overlap 52085 52092, overlap 52090 52094 ATCGATGCTCCAAAT GTATTCCATCTGTGGAATAT TTCAAGCG ATATTCCACAGATGGAATAA CTCGATCGCTTTCGA TERM 37 52135 - 52094 - G 87 -17.7 -2.64472 | opp_overlap 52092 52085, overlap 52090 52091 GATGCTCCAAATGTA TTCCATCTGTGGAATAT TTCAAGCG ATATTCCACAGATGGAA TAACTCGATCGCTTT TERM 38 52319 - 52293 - G 89 -6.5 -5.1101 | gap 1, overlap 52295 TTACTAGGCAAAAAA TAGGGCCACCGG AAAA CCGA-GGCCCTT GAAGTGTGAAGGTTA TERM 39 52317 - 52295 - G 78 -9.1 -4.1821 | gap 1, overlap 52293 ACTAGGCAAAAAATA GGGCCACCGG AAAA CCGA-GGCCC TTGAAGTGTGAAGGT TERM 40 52983 - 52966 - gH 70 -9.9 -3.22223 | GAACTCGATGACGAA GACGATC TGGA GATCGTC CATGAATATGTTCCG Avi_8076 52672 - 53013 + | hypothetical protein TERM 41 52998 - 53022 + GF 95 -12.1 -4.09685 | overlap 53002 CCATGAATATGTTCC GGGTGGGTCTC ATT GAGACCCTTCC TTTTCACAGGTGCCG TERM 42 53002 - 53018 + GF 88 -12.3 -3.67175 | overlap 52998 GAATATGTTCCGGGT GGGTCTC ATT GAGACCC TTCCTTTTCACAGGT TERM 43 53115 - 53100 - gf 78 -9 -3.87815 | CGGCATCGGCACAAA CCTGCA GATC TGCAGG TTGCCAGCCGCGCCC Avi_8077 52985 - 54193 + | hypothetical protein Avi_8078 54336 - 54938 + | hypothetical protein TERM 44 54979 - 55037 + F 85 -10.4 -4.26076 | gap 3 CTGCCACCGACGTTC GGGCTGTGTCGGTCCGTGGTCAGCGACGC ATCT GCG--GATTACCACGGA-CGACACGTCCC TTTTCATCAGCCTGA TERM 45 56186 - 56205 + G 76 -12.2 -3.38812 | overlap 56167 56183 TCGCGACGCCGGCAC GGATGTCG TCGT CGACATCC TGTTCTTCCGCAAGC Avi_8079 55167 - 56579 + | helicase SNF2 family Avi_8080 56800 - 57684 + | transposase TERM 46 58299 - 58312 + G 72 -4.5 -4.59773 | overlap 58292 58300 CACCGTTATCGCCGA TCTCG GCGG CGAGG TTTTTCGCGATCCCG TERM 47 58927 - 58941 + G 72 -9.2 -3.65699 | CATCTGAAACTCCCC GGTGCC TCT GGCGCC TTCGTTCTTTATGGG Avi_8083 57688 - 61323 + | helicase Avi_8085 64496 - 61659 - | hypothetical protein rzcA 65224 - 64493 - | rhizobiocin/RTX toxin Avi_8089 66406 - 65582 - | PEP phosphonomutase TERM 48 65628 - 65610 - G 76 -3 -5.00616 | overlap 65611 GTGCCGTTGAAAAAA CCTTCGAG CTC CGCGAAGC CCATAGCGTCCTCCG TERM 49 66301 - 66264 - G 100 -9 -4.9725 | overlap 66268 ACGCCGAGAGAAAAA GCCATCCCGGCGCTGG TGGTCG CGAGCGCCGGAAAGCC CAATGCTGCGAGAAT TERM 50 66527 - 66499 - H 79 -2.3 -5.28826 | overlap 66505 AAACCGGAGAAAAAA GAAAAAGCCTCTC ACA GATCGGCCTTCCC GCCGCCGCTTGCGCT TERM 51 66521 - 66505 - H 100 -2.1 -5.8096 | overlap 66499 GAGAAAAAAGAAAAA GCCTCTC ACA GATCGGC CTTCCCGCCGCCGCT TERM 52 67305 - 67324 + H 71 -9.3 -3.53091 | opp_overlap 67294 CGAACGCGCCGAGTG GCACACG ATCTCC CGTGTGC TTTCAAAGACCGCAT TERM 53 68527 - 68560 + H 93 -8.2 -5.03145 | gap 2, opp_overlap 68524, overlap 68530 CTTCCGGATGAACGT CCG--CCGCCGCTGGT CTCC ATCAGCGGCGGTTTGG TTTTTTACACCCTTA TERM 54 68530 - 68555 + H 100 -16.9 -4.42765 | opp_overlap 68524, overlap 68527 CCGGATGAACGTCCG CCGCCGCTGGT CTCC ATCAGCGGCGG TTTGGTTTTTTACAC Avi_8094 68595 - 69068 + | hypothetical protein TERM 55 69119 - 69102 - g 78 -14.1 -2.63631 | opp_overlap 69102 CCAACGTCGACAGCA CCCCCGG ATTT CCGGGGG TTTCTTTTGGGCGAT TERM 56 69102 - 69119 + G 100 -14.1 -4.65263 | opp_overlap 69102 CCAACGTCGACAGCA CCCCCGG ATTT CCGGGGG TTTCTTTTGGGCGAT Avi_8095 69065 - 69952 + | hypothetical protein Avi_8097 69949 - 70353 + | hypothetical protein TERM 57 70564 - 70519 - f 100 -13.9 -4.56597 | opp_overlap 70527 GCCGCTCTCGAAAAA GCAGGCACGCGGGCTTCGCAG GTCT CTGCAAGACCCGCTTTCCCGC ACACCGGCTTTGCTC TERM 58 70527 - 70556 + F 74 -9.9 -3.53012 | opp_overlap 70519 CGAAAAAGCAGGCAC GCGGGCTTCGCAG GTCT CTGCAAGACCCGC TTTCCCGCACACCGG TERM 59 70608 - 70621 + F 71 -9.5 -3.51232 | CGGACCCTGAACCGC CCGGC TTGC GCCGG TTCCTTTCGACCGCA Avi_8098 70699 - 71298 + | hypothetical protein TERM 60 71307 - 71326 + F 81 -12.8 -3.21912 | opp_overlap 71300 71301, overlap 71301 TGAGTAAACCACCGT GGCGGGGC TTTG GCTCCGCC TTCATCACTTCAAGG TERM 61 71339 - 71363 + F 85 -11.3 -3.64103 | overlap 71340 GCCTTCATCACTTCA AGGTCGCCCTC TTT GGGGGCGGCCC TTTGGCGTGTCGATC TERM 62 71340 - 71362 + F 90 -14.8 -2.7814 | overlap 71339 CCTTCATCACTTCAA GGTCGCCCTC TTT GGGGGCGGCC CTTTGGCGTGTCGAT TERM 63 71497 - 71481 - f 74 -10.1 -3.53444 | GGAGCCGGCGTCAAA GGCGCAA CGG CTGCGCC GTCCTCCACATGCGT ardC 71614 - 72540 + | antirestriction protein TERM 64 73142 - 73156 + T 77 -11.4 -3.14211 | CCGACCTTCTTCCCC TGCGGC TAT GCCGCA TTCCTCGCGAAACAT Avi_8103 73613 - 73428 - | transposase Avi_8104 74479 - 73595 - | transposase Avi_8105 75630 - 74734 - | IS1111A/IS1328/IS1533 family transposase TERM 65 75984 - 75931 - R 75 -5.4 -4.731 | gap 3, overlap 75932 75974 AATTGAGCAAGAAAA CGTGGCTGGTGACCTCTATTTCGCCGG GCA CCGGCGAGA-AGATGTCAC--GTCACA ACGTTGACGGTGGAG TERM 66 76482 - 76459 - R 70 -10.2 -3.182 | overlap 76457 TGGAAACATTGAAGA CCGGCGACGG GCGC CCATTGCCGG AGCACATGAAGAGGC TERM 67 77397 - 77411 + r 77 -11.4 -3.14211 | CCGACCTTCTTCCCC TGCGGC TAT GCCGCA TTCCTCGCGAAACAT TERM 68 77752 - 77769 + r 85 -8.3 -4.48877 | AGTCTTATGGCGGCG GCCCCAG TATT CCGGGGC TTTTGTGGCTGTTTC Avi_8111 78151 - 77849 - | hypothetical protein TERM 69 78177 - 78195 + H 72 -10.2 -3.31144 | CTGTGCTGTGTTCAA GCCCGCGA CCA TCGCGGCC TTGTGGCGATCGAGA Avi_8114 78540 - 79766 + | integrase/recombinase xerC 79742 - 80680 + | site-specific tyrosine recombinase XerC TERM 70 81286 - 81266 - g 74 -6 -4.41348 | opp_overlap 81267, overlap 81267 CGCTCTGGAAAGAAA CGGCCCGC GACGT GCGAGCCT GGCTTGCGGTGCGCG Avi_8116 80677 - 81684 + | integrase/recombinase TERM 71 81988 - 81970 - f 72 -10.2 -3.31144 | TCTCGATCGCCACAA GGCCGCGA TGG TCGCGGGC TTGAACACAGCACAG Avi_8119 82014 - 82316 + | hypothetical protein TERM 72 82413 - 82396 - f 85 -8.3 -4.48877 | GAAACAGCCACAAAA GCCCCGG AATA CTGGGGC CGCCGCCATAAGACT Avi_8120 82457 - 82654 + | hypothetical protein TERM 73 82702 - 82655 - f 100 -14.8 -3.61398 | gap 1, overlap 82668 CGCGGTGCCGAATAA GCCCCGGAT-ATGACGCCCCGCA CAC TGCGGGGCGTCGCCAGCCTAGGC CACTCGGCAGCTTAA TERM 74 82688 - 82668 - f 100 -18.3 -2.62515 | overlap 82655 AAGCCCCGGATATGA CGCCCCGCA CAC TGCGGGGCG TCGCCAGCCTAGGCC Avi_8121 82794 - 83042 + | hypothetical protein TERM 75 83138 - 83102 - T 85 -13 -3.16742 | gap 1, opp_overlap 83097 83094, overlap 83063 83104 TCGAACCGGGACTAA GACTGGAG-GCCCCGCC GCGA GGCGGGGCTCTCCACTA CCTGGATCACTTGTT TERM 76 83136 - 83104 - T 100 -15.6 -3.14527 | gap 1, opp_overlap 83097 83094, overlap 83063 83102 GAACCGGGACTAAGA CTGGAG-GCCCCGCC GCGA GGCGGGGCTCTCCAC TACCTGGATCACTTG Avi_8123 83423 - 83145 - | HNS-type DNA binding protein TERM 77 83478 - 83457 - R 73 -3.7 -4.78848 | gap 1, opp_overlap 83457 83462 TTGTCAAAGATAAAA TCCGTGTCAG CTT CTGACT-GGA TTGTCATCGGTGACG Avi_8126 83815 - 83507 - | hypothetical protein yci 84310 - 83870 - | nuclease traG 86271 - 84307 - | Ti-type conjugative transfer system protein TraG TERM 78 86109 - 86091 - G 70 -4.5 -4.43012 | gap 1 ACGCGAACAGGAAAA GCGTGCCG ATCG CAGC-CGC GGTCGCATAGGGCAG traD 86473 - 86258 - | conjugal transfer protein Dtr system traC 86774 - 86478 - | conjugal transfer protein Dtr system TERM 79 87656 - 87682 + G 73 -11.7 -3.14132 | gap 1 CCATCTGGCCCTCGG CGG-CATCGATC TCAG GATCGATGGCCG TTCCTACAAAAAGCA TERM 80 88462 - 88438 - g 93 -9.9 -4.77165 | TGCTCGACAATAAAA CCGTCTTCGTC ATG GACGAGGCCGG CATGGTGGCCTCGAA traA 87030 - 90332 + | Ti-type conjugative transfer relaxase TraA traF 90329 - 90859 + | conjugative transfer signal peptidase TraF TERM 81 91277 - 91311 + F 78 -5.5 -4.87133 | overlap 91279 GCCGCCCTTCGGCAT CACCGGCTGGGCGCA TCCGC TGACCGCAGCCGGCG TTTTGTTTCCCGGAT traH 92094 - 92723 + | conjugal transfer protein Dtr system Avi_8136 92879 - 93325 + | hypothetical protein Avi_8137 93351 - 93785 + | hypothetical protein traM 94123 - 94431 + | transcriptional repressor TERM 82 94494 - 94512 + T 72 -7.4 -3.96337 | overlap 94507 CCGCATTAGTCTTTG TCGTCGAG CCT CTCGAGGA TTTCGTAGTTTTTGA TERM 83 94573 - 94593 + T 88 -10.5 -4.08767 | CAAGCACAGCATCCG TCGAGATCG CGC TGATCTCGA TTTTAACAAGATGGA traR 95522 - 94839 - | transcriptional regulator TERM 84 95691 - 95711 + r 76 -7.5 -4.18401 | CGCCTTCATGCTCAT CGGCCTGCA GTT TGAAGGTCG TTTTCACATATGTCG alr 96776 - 95892 - | alanine racemase TERM 85 96908 - 96897 - H 77 -5.8 -4.68424 | overlap 96898 GAATGTATTGAAAAA CGGA GGAA TCCG CCATGTCCGCTCTGG Avi_8143 96911 - 97372 + | transcriptional regulator Avi_8145 98604 - 97789 - | transcriptional regulator IclR family TERM 86 99281 - 99271 - g 76 -4.6 -4.73682 | GCCTACAACACAAAA CACG TAT CGCG CGAGGAGGCTAAAAA TERM 87 99309 - 99298 - g 83 -4.4 -5.06451 | GAGGAGGCTAAAAAA CTTG GCTA CAAG CTCCTTTGGGACAAG Avi_8146 98782 - 99897 + | spermidine/putrescine binding protein of ABC transporter TERM 88 99932 - 99912 - f 71 -11.1 -2.87211 | AGCTTTTCGCACAGA TGGCCGCGT CAG AGGCGGCCA AATGCGAACCTCAGC Avi_8147 100330 - 101070 + | ABC transporter nucleotide binding/ATPase protein potB 101072 - 101953 + | ABC transporter membrane spanning protein TERM 89 102096 - 102115 + G 72 -4.9 -4.56597 | overlap 102092 CATGCAAGGGGTCGG GCTCCGC TGGTTC GCCGAGC TTTTTCAGAACGAGA Avi_8149 101950 - 102750 + | ABC transporter TERM 90 102755 - 102740 - f 82 -11.8 -3.56568 | opp_overlap 102732 GAATCAGGTCGCAAA GGCGGC TTTA GCCGCC ATCGCGCAAGCCGGT TERM 91 102758 - 102791 + F 70 -11 -2.70932 | GGCTTTAGCCGCCAT CGCGCAAGCCGG TCCGAAGTCT CCGGCTTGCGCC TACTTCAACGAAACA bioA 102871 - 104217 + | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 92 105025 - 105042 + G 72 -9.1 -3.87576 | ACTCGTTGCAGATTG CGGCGGT ATCG ACCGCTG TTTGCCTTCTTATCG potB 104805 - 105662 + | ABC transporter membrane spanning protein Avi_8156 105659 - 106453 + | ABC transporter potF 106492 - 107529 + | ABC transporter substrate binding protein (putrescine) TERM 93 107546 - 107584 + F 81 -11.1 -3.70902 | gap 1, opp_overlap 107569, overlap 107550 CACAAGCCGATCGTT TCA-TTCCGTGACAGGTC AACA GACCTGTCACGGATCTGC TTTGACTCTCGACAG TERM 94 107550 - 107579 + F 100 -20.9 -3.03038 | opp_overlap 107569, overlap 107546 AGCCGATCGTTTCAT TCCGTGACAGGTC AACA GACCTGTCACGGA TCTGCTTTGACTCTC TERM 95 108406 - 108418 + G 72 -4.8 -4.6902 | GCGAAAGTCGTGGAG CGTC AAGAC GACG TTTTTGAAGTTCTGG potG 107614 - 108747 + | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 96 109484 - 109503 + G 76 -7 -4.44448 | overlap 109487 GCTGTTCTTGCAGAG CGGGCCGG GCTG CCGGCTGG TTTGTTTAACGTCGT TERM 97 109591 - 109564 - g 78 -8.4 -4.21676 | opp_overlap 109570, overlap 109570 AGAATTCACCGAAAA CGACAAGGTCAG GAAG CTGACCTTTACG GGCTCAACAGATGTC attK 108866 - 110350 + | NAD-dependent succinate aldehyde dehydrogenase TERM 98 110426 - 110446 + F 100 -14.7 -4.02719 | opp_overlap 110426 TGGACTGTTAGAGAA GCGGGCGAG AAT TTCGCCCGC TTTCGTGTTTCCTGG TERM 99 110446 - 110426 - f 95 -14 -3.49475 | opp_overlap 110426 TGGACTGTTAGAGAA GCGGGCGA GAATT TCGCCCGC TTTCGTGTTTCCTGG TERM 100 110509 - 110519 + F 70 -6.8 -4.0371 | TCCTGATAGGGCCGT CGCA TAA TGCG TTTGTATGCAAGCTG dfpA 110875 - 112443 + | ABC transporter substrate binding protein (peptide) Avi_8163 113337 - 112588 - | transcriptional regulator IclR family Avi_8165 115041 - 113659 - | oxidoreductase TERM 101 114058 - 114026 - GR 77 -9.7 -3.67588 | overlap 114015 GAAACGCTACTCAAA GTCCACCGGGCCAGA GCC TCGGGCCCGGTTACC GCGAAGCGGCTGATC TERM 102 114916 - 114936 + gr 74 -11.1 -3.14463 | opp_overlap 114901 114900 GCCGGCGATGCCGCC GCCGATGAC GAC GACATCGGC TTGCTCGGGCAGCTT Avi_8166 115870 - 115013 - | hypothetical protein TERM 103 115918 - 115947 + r 76 -12.1 -2.59267 | gap 1, opp_overlap 115918, overlap 115917 TCTTTCATGACGAAA CGCGGTGC-GGACC CTT GGCCCTGCATCGCG ATTGCTCTGCTTCAG TERM 104 115947 - 115918 - R 91 -12.1 -3.78775 | gap 1, opp_overlap 115918 115917 TCTTTCATGACGAAA CGCGGTGC-GGACC CTT GGCCCTGCATCGCG ATTGCTCTGCTTCAG Avi_8168 117338 - 115983 - | hypothetical protein Avi_8169 118275 - 117493 - | ABC transporter membrane spanning protein potB 119141 - 118272 - | ABC transporter membrane spanning protein afuC 120235 - 119141 - | ABC transporter nucleotide binding/ATPase protein (iron) Avi_8173 121284 - 120250 - | ABC transporter substrate binding protein (spermidine/putrescine) TERM 105 120794 - 120820 + g 95 -13.6 -4.01939 | opp_overlap 120781 AAGGCCGCAATTTCG GGGGCAGGCCAC ATG GCGACCTGCCCC TTTAGTTCTGGCTTG TERM 106 121065 - 121087 + g 80 -9.9 -4.13767 | gap 1 GGGTCGGATTGTTCT TCTCGGCGCG GATA CG-GCCGAGA TTTTGCGCTGAAAGG hyuB 123072 - 121315 - | hydantoin utilization protein TERM 107 122161 - 122185 + g 71 -11.3 -3.18264 | opp_overlap 122160 122155 CGCGTAGAAGATAGC CGCCCAGGTCG TGG CGAGCGGGGCG TTGATCGGTCCGCGG hyuA 125130 - 123085 - | hydantoin utilization protein TERM 108 125154 - 125174 + H 71 -11.1 -2.85351 | CCGTTGACACTTGTT GTGGCGGCT TGC AGCCGCCAG TCTGCTGTCGGGGGA TERM 109 125382 - 125353 - H 72 -4.9 -4.65747 | CAAGCTCTAAGAAAA TCACGGATTGCCT TCGA AGGCGCTCTGTGA CCTGCCCATGTAGCT TERM 110 125562 - 125535 - H 93 -3.6 -5.54907 | gap 1, overlap 125558 TTTATAAAATAAAAA TCGTATCACATTA TGA TAACA-GATACGA CGCGCAGGCCGGGAG TERM 111 125610 - 125598 - g 70 -4.7 -4.43844 | TTATGAGTGAGAAAA GCGTC GAG GGCGC ACAGGTTATCGGCAA Avi_8178 125585 - 126352 + | Transcriptional regulator Avi_8180 126581 - 127522 + | ABC transporter membrane spanning protein (oligopeptide) Avi_8181 127519 - 128400 + | ABC transporter membrane spanning protein TERM 112 128823 - 128807 - g 87 -9.4 -4.64657 | GGAAATGCTTAAAAA GGTCGG TATCC CCGACC CGGAACGCCGGATTG TERM 113 130163 - 130141 - g 82 -9 -4.4261 | TTTGGAATATGAAAA GCGACGGGCA TTT CGTCCGCCGC ACCGCGCCATTGCTC Avi_8183 128400 - 130190 + | ABC transporter nucleotide binding/ATPase protein TERM 114 130369 - 130354 - g 83 -11.8 -3.86015 | opp_overlap 130354 TATCGCGGCCAGAAA GGCGGC TTAC GCCGCC TATGGTCAAGGTACG TERM 115 130354 - 130369 + G 70 -11.8 -2.79183 | opp_overlap 130354 TATCGCGGCCAGAAA GGCGGC TTAC GCCGCC TATGGTCAAGGTACG Avi_8184 130199 - 131530 + | MmgE/PrpD family protein TERM 116 131678 - 131697 + F 81 -10 -3.92522 | ATTTTCGGCGATGAG GCGACTTC CTGT GAGGTCGC TTTATCGACTTGAGC adhP 131825 - 132874 + | alcohol dehydrogenase TERM 117 132889 - 132903 + F 70 -7 -4.04927 | opp_overlap 132875 132871 ACCGCAGCTTCGAAC GCAGCG GCC CGCGGC TTCTTTCATGCTTCG Avi_8188 132911 - 134464 + | aldehyde dehydrogenase TERM 118 134530 - 134485 - f 100 -13.3 -4.20084 | gap 1, overlap 134486 AGCACTTATTGAAAA TCCC-CGCCTGAATGAGATCGC ACC GCGAGACCTTTCAGGCGAGGGA AGGATGTCGTCCGAT TERM 119 134528 - 134486 - f 93 -14.8 -3.11569 | overlap 134485 GCACTTATTGAAAAT CCCCGCCTGAATGAGATCGC ACC GCGAGACCTTTCAGGCGAGG GAAGGATGTCGTCCG TERM 120 134980 - 134992 + F 90 -9.1 -4.57073 | opp_overlap 134979 TCCGCCCGATACGAC GGGGA ACA TCCCC TTTTTGAGCAAGCTC TERM 121 135870 - 135895 + F 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 122 136338 - 136326 - f 72 -7.7 -3.99592 | ATCGATCACCAGAAA CGCAT CGG ATGCG CCAACGATCCTGTCC TERM 123 136925 - 136960 + F 81 -10.8 -3.65812 | opp_overlap 136925 136922 136930, overlap 136930 GCTTTTAGTATATTA TCAAACAATATTGAAT TATA ATTAAATATTGTTTGA TTATGTTCGAGCAGA TERM 124 137618 - 137589 - g 75 -12.3 -3.22618 | gap 1, opp_overlap 137588, overlap 137587 137591 CTTTTAGAGAAGAGA TATGCAAGCGAGAG ATC CTC-CGCTTGCACA ATAGTTTATCTTTCG TERM 125 137616 - 137591 - g 79 -12.7 -3.17443 | gap 1, opp_overlap 137588, overlap 137589 137587 TTTAGAGAAGAGATA TGCAAGCGAGAG ATC CTC-CGCTTGCA CAATAGTTTATCTTT Avi_8194 137201 - 137929 + | T-DNA oncoprotein TERM 126 138169 - 138188 + T 79 -2.2 -5.30575 | opp_overlap 138173, overlap 138173 TTTATTAAAATTTTA TAAATATG GCAT CATATGTA TTTTTTGGATTTTTG nos 139356 - 138220 - | D-nopaline dehydrogenase TERM 127 139929 - 139903 - H 86 -6.6 -4.96848 | opp_overlap 139921, overlap 139905 GGGGTGATACAAAAA TATGCAAACGTA TTT CACGTTCGCAGA TGCAGCGAGCTTGTG TERM 128 139927 - 139905 - H 81 -9.2 -4.11141 | opp_overlap 139921, overlap 139903 GGTGATACAAAAATA TGCAAACGTA TTT CACGTTCGCA GATGCAGCGAGCTTG TERM 129 140784 - 140759 - H 78 -9.1 -3.96148 | gap 1 TGCGTGGATGAGAAA TCGCAAATCCAG GCA CTGGAT-CGCGA GCAGCCGGTTCTGCC TERM 130 141601 - 141612 + H 77 -5.8 -4.64676 | opp_overlap 141598 AGTAAAAACTGACTT CCCT TGAA AGGG TTTTCTTCCGGCTCG TERM 131 142368 - 142330 - g 73 -11 -3.38224 | opp_overlap 142328, overlap 142328 ATGTGATCCGAAAGA CCTATTTCGCCGGGAT TGATTTG ATCCCGGCGAACCTGG AACTTATGGAGTATG TERM 132 142543 - 142557 + G 75 -9.2 -3.8062 | CTCTTGGCGCCCTAT GCGCTG CCA CGGCGC TTCTTATCACCATTC repA 141732 - 142943 + | replication protein A repB 142940 - 143977 + | replication protein B TERM 133 144031 - 144004 - f 81 -10.6 -3.69354 | CGCCAGAACCGGAAA GGGCCCATCGAC TGCA ATCGATAGACCC TTGAACTAGCGGCCA TERM 134 144521 - 144578 + G 71 -7.8 -4.03413 | gap 2, opp_overlap 144562 GGTAAATAGATGTAT CCGACGGCTAGTTGAAGCTGGTATCG CGGCTTAT CGAGAC-AGCT-CAACGGGCCGACGG TTTGTATACCGCAAT TERM 135 144988 - 145011 + G 83 -8 -4.56597 | opp_overlap 144987 144986, overlap 144989 AAAGTAATAAAATGC CGACCCGCTC TAAC GAGCGGGGCA TTTTTCAAGAAAACG TERM 136 144989 - 145010 + G 73 -11.5 -3.33744 | opp_overlap 144987 144986, overlap 144988 AAGTAATAAAATGCC GACCCGCTC TAAC GAGCGGGGC ATTTTTCAAGAAAAC TERM 137 145041 - 145025 - g 100 -15.1 -4.63932 | opp_overlap 145027 CATTTTTCAAGAAAA CGGCCGC TAC GCGGCCG AAGGGGCTTTTGAAA repC 144222 - 145484 + | replication protein C Avi_8202 146581 - 145481 - | transposase TERM 138 146019 - 146044 + g 75 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 139 147899 - 147909 + r 77 -8.2 -4.06384 | TCAACAGCGGCTCAC GGCC CTT GGCC TTTCTGGTCTTCAGG TERM 140 147996 - 148019 + r 77 -11.7 -3.18912 | opp_overlap 147996, overlap 147984 GACCCCGCCCATAGA GGCGGCTTG GCTCCG CGAGCCGCC TTCGTAGATCACTGA TERM 141 148049 - 148072 + r 78 -11 -3.52113 | opp_overlap 148048 148039, overlap 148047 ACAAAGCAAGCAATC GCCGGGAC CAGTCCGT GTCCCGGC TCTTTCTGGCAAGCT virD5 150673 - 148205 - | virA/G regulated protein TERM 142 149873 - 149893 + g 73 -3.3 -4.82667 | gap 1, overlap 149878 GAGATCTTCCCATCC TGGCTGCG CGGGCC CG-AGCCA TTTTTCGTATGCTAG TERM 143 150394 - 150407 + g 77 -8.1 -4.32579 | overlap 150392 CGGAACTGTCTATCG CGCTC ATGC GAGCG TTTATTATCGGATCT virD4 152772 - 150781 - | virA/G regulated protein TERM 144 152206 - 152196 - G 74 -8.2 -4.21936 | opp_overlap 152195 152196, overlap 152197 GCGAGAACTTGAAAA CGGC GTC GCCG CTTGATCTGCGCGCC virD3 155502 - 152830 - | virA/G regulated protein TERM 145 153839 - 153852 + g 87 -9.5 -4.63218 | overlap 153838 TCGAGAGCGACGGGT GCCGC CCGG GCGGC TTTTGTTCCCGAAAC virD2 156727 - 155516 - | endonuclease virD1 157200 - 156754 - | virA/G regulated topoisomerase TERM 146 157025 - 157012 - G 75 -9.5 -3.87994 | opp_overlap 157015 ATCGATCTCGAGAAA GCCGG CGAT CCGGC GGACCGCAATTCTTA virC1 157457 - 158152 + | virA/G regulated protein TERM 147 158209 - 158197 - g 72 -6.2 -4.4078 | GTCGGTGAAGCAAAA CGGC TTGCT GCCG CGCGACCGGAGATCG virC2 158149 - 158763 + | virA/G regulated protein virG 159610 - 158885 - | two component response regulator virB11 160875 - 159841 - | P-type DNA transfer ATPase VirB11 virB10 162030 - 160909 - | component of type IV secretion system virB9 162908 - 162030 - | P-type conjugative transfer protein VirB9 virB8 163618 - 162905 - | component of type IV secretion system virB7 163772 - 163605 - | VirB7 virB6 164687 - 163800 - | component of type IV secretion system virB5 165415 - 164747 - | component of type IV secretion system virB4 167812 - 165443 - | component of type IV secretion system virB3 168138 - 167812 - | VirB3 virB2 168500 - 168135 - | VirB2 virB1 169232 - 168516 - | component of type IV secretion system TERM 148 169458 - 169469 + H 72 -4.4 -4.63007 | GATCACGTTATGGCA TCAG GGAT CTGA TTTTCTCTGATTGTG TERM 149 170049 - 170074 + H 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 150 170210 - 170222 + H 76 -10.5 -3.28712 | GTTGTTGATGTCGCG CGCCG TCA CGGCG TTATAGCAAACCAGC Avi_8230 170524 - 170877 + | transposase Avi_8231 170939 - 172600 + | transposase TERM 151 172638 - 172588 - T 100 -15.6 -3.85698 | gap 1 TGCCGCCCGCATAAA GGCCTCACAATGAGCTCGTCAGA TACTCG TCGGT-GAGCTCATCGTGAGGCC CCAAAGGCAAAACTA TERM 152 172869 - 172881 + T 75 -4.8 -4.81083 | overlap 172867 GTTATGAAGTGAGCG TCCG GCGAA CGGA TTTTTGGTGGTTCGA Avi_8233 173212 - 172907 - | hypothetical protein Avi_8237 174439 - 174077 - | transposase Avi_8238 174783 - 174421 - | transposase TERM 153 174956 - 174944 - R 73 -9.1 -3.61398 | TCTGCTGCGGAAGAA CGTCG TGC CGACG TGCTACATCCGAAAC TERM 154 175154 - 175143 - R 72 -7.2 -4.25104 | TGCGCCCGACCAAAA CCGG CTCA CCGG ACGCTCACGTTATGA virE3 177296 - 175275 - | virA/G regulated protein TERM 155 175900 - 175917 + g 84 -4.1 -5.2015 | opp_overlap 175893, overlap 175914 GGTCGAAAGAGATGT CCTCG CCACTCAC CGAGG TTTTTCTCTTCTTGC virE2 179033 - 177363 - | exported virulence protein TERM 156 177880 - 177903 + g 78 -8.9 -4.14739 | CCCTCTTTCAAGGCT TGCGTCCAA GGGGAA TTGGGCGCA TTTTGAAATAGGTAG TERM 157 178279 - 178289 + g 73 -3.2 -4.85433 | CCAGCTTGAAACTCG TGCT CAT AGCG TTTTTGAATTTCTCT TERM 158 178407 - 178397 - G 91 -6.8 -5.252 | TAGTTTGATAAAAAA TGGC GGT GCCA GTAATACCCATCTCG virE1 179238 - 179047 - | protein secretion chaperone TERM 159 181458 - 181483 + H 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 160 181619 - 181631 + H 76 -10.5 -3.28712 | GTTGTTGATGTCGCG CGCCG TCA CGGCG TTATAGCAAACCAGC Avi_8248 181933 - 182286 + | transposase Avi_8249 182348 - 184009 + | transposase TERM 161 184047 - 183997 - T 100 -15.6 -3.85698 | gap 1 TGCCGCCCGCATAAA GGCCTCACAATGAGCTCGTCAGA TACTCG TCGGT-GAGCTCATCGTGAGGCC CCAAAGGCAAAACTA virA 186821 - 184278 - | two component sensor kinase TERM 162 184354 - 184365 + g 70 -3.6 -4.56597 | opp_overlap 184362 TAGGCGAGCGTCTTG GCTG AAAT CGGC TTTTTCAAAAAACGG TERM 163 184394 - 184378 - G 83 -5.7 -5.00616 | overlap 184362 184379 184380 GGCTTTTTCAAAAAA CGGGCAG ATC CCTCCCG ATCCGCCGAAAGGGG virH1 188221 - 187013 - | P-450 monooxygenase TERM 164 188467 - 188482 + H 77 -8.2 -4.14511 | overlap 188458 GGAGCGCAGCCTGAT CGGCGG ATTT TCGCCG TTTTCGGATAGGCTT Avi_8253 188557 - 189786 + | phage integrase family protein tnp 189783 - 190805 + | transposase TERM 165 191137 - 191164 + T 70 -10.7 -2.70936 | gap 1, opp_overlap 191134, overlap 191130 191134 191132 TGGTTTAAGTTATGC TGCCATAGCTGG TTCGT CCAGC-ATGGCA TAGTATCGTTCCTCG tnp 191570 - 191202 - | transposase Avi_8256 192522 - 191686 - | reverse transcriptase-like protein TERM 166 191905 - 191944 + g 71 -10 -3.48276 | opp_overlap 191911, overlap 191891 191890 191908 CGGTTCCGGGACCCT GAACCATTTCCGCATCAA GGGT TTGATGCGGGATCGGTAC TTGTGTCCCAGCCAA TERM 167 192370 - 192403 + g 74 -6.8 -4.3739 | gap 1, opp_overlap 192379, overlap 192371 AAAGTCGTCAGCGTA TCGGCAATAGGCAAC GGCCG GTTTCC-ATTGCCGG TTTTCTCGAACCGTA Avi_8257 192974 - 192645 - | integrase/recombinase Avi_8258 193862 - 192978 - | transposase Avi_8259 194823 - 194083 - | integrase/recombinase Avi_8260 195790 - 194813 - | integrase/recombinase Avi_8262 196767 - 195790 - | integrase/recombinase TERM 168 197058 - 197038 - R 71 -11.1 -2.90901 | opp_overlap 197033 ATATCTCCAATCACA GGCCCGACA CCG TGCCAGGCC AGGTGATCAATTTAT Avi_8264 197853 - 197080 - | 18S rRNA intron 1 protein TERM 169 197166 - 197116 - G 70 -4.1 -4.66318 | gap 2, opp_overlap 197083, overlap 197117 197132 197162 AGGAGCCCAACAAAA CCGCCCCTGCAACCAAGCACTGT GCATTTT ACAGCGCT-GGTCATAAGGG-GG TTTATGGTCAGCGGA TERM 170 197193 - 197162 - G 100 -21.8 -3.28924 | overlap 197116 197117 197189 CAGCGCTGGTCATAA GGGGGTTTATGGTC AGCG GACCATAAACCCCC TTGCGGAACACCCTC Avi_8265 197920 - 198693 + | hypothetical protein Avi_8266 199241 - 198912 - | hypothetical protein TERM 171 199371 - 199321 - H 100 -15.6 -3.85698 | gap 1 TGCCGCCCGCATAAA GGCCTCACAATGAGCTCGTCAGA TACTCG TCGGT-GAGCTCATCGTGAGGCC CCAAAGGCAAAACTA Avi_8269 200377 - 200997 + | protein 6b Avi_8271 202619 - 201537 - | D-vitopine dehydrogenase TERM 172 201820 - 201840 + g 75 -5.3 -4.65838 | AATTCCTTCCACTCG GTGGCCTGG CCG CCATACCAC TTTTTAGAATATGTG TERM 173 202396 - 202382 - G 70 -2.1 -4.84359 | overlap 202390 GTACCGTTAGAAAAA TGAAC TCAGC GTCCA AGATTGCCGCTTCAA Avi_8272 203032 - 203541 + | insertion sequence ATP-binding protein tnp 203849 - 204409 + | transposase Avi_8275 205056 - 206207 + | ATP-dependent DNA ligase Avi_8276 206633 - 206271 - | hypothetical protein Avi_8278 207335 - 207958 + | virP tnp 209580 - 208159 - | transposase Avi_8280 209856 - 210158 + | hypothetical protein Avi_8282 211389 - 210169 - | transposase for insertion sequence element isrm3 tms2 215015 - 213627 - | indole acetamide hydrolase TERM 174 213918 - 213902 - G 74 -2.1 -4.99947 | overlap 213905 CTGAAGGAAATAAAA CAGCGTC AAG GCCGTTG GAGGAGTAATAATTC TERM 175 216094 - 216068 - g 70 -2.3 -4.74504 | gap 1, overlap 216069 ATTCGAAGCCAAAAA CGTG-GTGGG AGGTAGAG CCCACACACA CTTCTTCAAAGGCGA TERM 176 217348 - 217312 - g 90 -10.1 -4.66163 | opp_overlap 217304 ACGTCTATTCAAAAA GGCTTTTCTTTCAGCCG CTT CGACTGAACGGAGAGCC TGATGGACGTGTCTG tms1 215346 - 217517 + | tryptophan 2-monooxygenase Avi_8291 219702 - 218818 - | transposase istA 220458 - 219847 - | IS21 family transposase ipt 221625 - 222335 + | isopentenyl transferase Avi_8295 223242 - 222853 - | D-vitopine dehydrogenase Avi_8296 223786 - 223484 - | D-vitopine dehydrogenase Avi_8298 224691 - 225107 + | hypothetical protein traR 225950 - 225258 - | transcriptional regulator noxA 227568 - 226174 - | D-nopaline dehydrogenase TERM 177 227727 - 227694 - R 80 -11.6 -3.40558 | opp_overlap 227717, overlap 227692 227713 GAGACAGTCGAAACA CACGCCCATGCCGC AGTAAG GCGCCCTGGGCGCG CCGCTTACCGGGGTC noxB 228921 - 227851 - | D-nopaline dehydrogenase TERM 178 227924 - 227904 - G 75 -11.8 -3.30635 | opp_overlap 227915 TAAAGGGGTCGAGAA CCGCCGGC CAATC GCCAGCGG CAATCGCTTCGGCTA TERM 179 228477 - 228498 + g 71 -13 -2.59475 | overlap 228476 TCGCTACCTTGTGAA GCGCTCCG AGCAGC CGGAGCGC ATTGATGTGTCCGTC TERM 180 228547 - 228565 + g 73 -3 -4.8048 | overlap 228542 228549 228550 ACCTACCACGTCCGG GCCGATGC CCG GCATCATC TTTTTCATCTGAGCA TERM 181 228723 - 228708 - G 100 -9 -5.14563 | GCCGGGAGTAAAAAA GAGGCA TCTC TGCCTC GTCCGAAAGCTCACT Avi_8304 229787 - 228990 - | ABC transporter attA2 230641 - 229784 - | ABC transporter membrane spanning protein (mannopine) TERM 182 230475 - 230452 - G 72 -4.6 -4.63932 | gap 1, opp_overlap 230452 230470 GAGTTCGGAAGAAAA TCTCCGCAAAG TAG CTGT-CGGAGA ATATTTCCCTGTAGT Avi_8306 231681 - 230638 - | ABC transporter nucleotide binding/ATPase protein TERM 183 231783 - 231816 + r 82 -11.7 -3.55582 | gap 1, overlap 231784 GATGAGGGCATAGTG AGCGTCTCCCAGCCAC TTC GTGGC-GGGAAACGCA TTGTGTCCCTGTTAT TERM 184 231784 - 231815 + r 95 -15.2 -2.72626 | gap 1, overlap 231783 ATGAGGGCATAGTGA GCGTCTCCCAGCCAC TTC GTGGC-GGGAAACGC ATTGTGTCCCTGTTA Avi_8307 232862 - 231828 - | ABC transporter substrate-binding protein TERM 185 232552 - 232540 - G 73 -3.3 -4.8667 | overlap 232544 TAGAGGGTAGAAAAA TCGAC GCC GGCGA TCGGGGCGCAGAAGC nocR 232967 - 233869 + | transcriptional regulator LysR family moaD 235884 - 234022 - | ABC transporter nucleotide binding/ATPase protein dppC 236738 - 235881 - | ABC transporter membrane spanning protein (dipeptide) Avi_8312 237688 - 236735 - | ABC transporter membrane spanning protein (oligopeptide) Avi_8313 239393 - 237843 - | ABC transporter substrate binding protein (oligopeptide) TERM 186 239470 - 239446 - H 88 -10.7 -4.0492 | opp_overlap 239462 GAAGCGCTACAGAAA CCGGAAGATAC CAG GTGCCTTCCGG GAGGCTGTCTTAAGC Avi_8314 239982 - 240278 + | uncharacterized NAD(FAD)-dependent dehydrogenase TERM 187 240794 - 240782 - g 76 -6.9 -4.50976 | overlap 240783 TTTCAGATGATAAAA GCGGG CGC CCCAC CAAGGGCGATCGTCG noxA 240275 - 241684 + | D-nopaline dehydrogenase Avi_8317 241677 - 242030 + | Endoribonuclease L-PSP TERM 188 242105 - 242126 + T 100 -11.5 -4.50159 | opp_overlap 242105 ACTGAATAACAAGAA CCCCGCGTT TGCT ATCGCGGGG TTTCTTTCGGTTCAC TERM 189 242126 - 242105 - T 91 -11.5 -4.10566 | opp_overlap 242105 ACTGAATAACAAGAA CCCCGCGTT TGCT ATCGCGGGG TTTCTTTCGGTTCAC TERM 190 242173 - 242186 + T 81 -9.5 -4.07687 | overlap 242152 GCGACGCGGCTAGTG CCGCG CCTC CGCGG TTTTGGAAGCGCCGT hyuB 243891 - 242167 - | hydantoin utilization protein TERM 191 243938 - 243916 - R 70 -10.6 -2.82635 | ACCTCGATGATCATA GTGCCTGTTG CAT CAACACGCAC AGACTGGCCAGGTTC hyuA 245924 - 243894 - | hydantoin utilization protein TERM 192 244194 - 244166 - G 78 -14.7 -2.64803 | opp_overlap 244171, overlap 244163 244162 244171 TGAGGCGCAAATTGA CGACATCAATGGC CCG GCCATCGATATCG TAGCCATATTCATGG TERM 193 245846 - 245862 + g 77 -10.1 -3.81027 | opp_overlap 245848, overlap 245841 245840 ACGAGGTTTTGTAAT GACTGGC CTC GCCGGTC TTTACGTTAATTGCG noxB 247160 - 246018 - | D-nopaline dehydrogenase nocR 247266 - 248156 + | transcriptional regulator LysR family trbI 249524 - 248211 - | conjugal transfer protein trbH 250013 - 249537 - | conjugal transfer protein TERM 194 250028 - 250040 + r 76 -4.1 -5.00196 | TCACCGCCCTCCCCT GGTGA TCG TTACC TTTTGTTGTTTCCAG trbG 250867 - 250013 - | P-type conjugative transfer protein TrbG trbF 251546 - 250884 - | conjugal transfer protein TERM 195 250991 - 251013 + g 85 -15.6 -3.05816 | overlap 250996 CAGTGGCAATGCCGC GGAAGCGGCG TGT CGCCGTTTCC TTGCCTCGCCGATCG TERM 196 250996 - 251008 + g 77 -10.5 -3.93288 | overlap 250991 GCAATGCCGCGGAAG CGGCG TGT CGCCG TTTCCTTGCCTCGCC trbL 252589 - 251561 - | P-type conjugative transfer protein TrbL trbK 252966 - 252739 - | entry-exclusion protein trbJ 253772 - 252963 - | P-type conjugative transfer protein TrbJ trbE 256206 - 253744 - | conjugal transfer protein TERM 197 253967 - 253916 - GR 75 -11.7 -3.07895 | gap 3, opp_overlap 253924 253933 GCCATGTCGAAGAGA CGACGGCC-CTCCG--GCGAGACGAC GTA GTAGTCTCGCTTCGGAATGGCGGTCG CGACGATCTCGATCT TERM 198 254939 - 254923 - GR 70 -5.7 -4.36914 | overlap 254925 GGCTGGCGGATAAAA CGGGCAC GGT GCGACCG CGCTTCCGGACCAGA trbD 256516 - 256217 - | conjugal transfer protein trbC 256913 - 256509 - | conjugal transfer protein trbB 257874 - 256903 - | P-type conjugative transfer ATPase TrbB traI 258509 - 257871 - | autoinducer synthesis protein SEQUENCE gi|222083145|ref|NC_011984.1| Agrobacterium vitis S4 plasmid pAtS4c, complete sequence (length 211620) repA 109 - 1308 + | replication protein A TERM 1 1345 - 1330 - f 82 -7.6 -4.45168 | opp_overlap 1330 CGGCGAAAATAGAAA GTTGTC GGGC GACAAC TTTTACCCCAATGCC TERM 2 1330 - 1345 + F 74 -7.6 -4.08767 | opp_overlap 1330 CGGCGAAAATAGAAA GTTGTC GGGC GACAAC TTTTACCCCAATGCC TERM 3 1760 - 1748 - g 71 -10.5 -3.53012 | opp_overlap 1748 CTGCGCGCTGTGAAA GCCGC CGG GCGGC TTGTCAAAGCGGCCA TERM 4 2086 - 2075 - g 75 -5.8 -4.56597 | GGTGTTTTGGAAAAA GTGC GCAC GCAC CTGCTAGGGCCACTG repB 1391 - 2368 + | replication protein B TERM 5 2406 - 2380 - f 100 -11.6 -5.33405 | CTGAGCAAAGAAAAA GCCCTCCGAAAC AGC GTTCCGAAAGGC CTCTCTCAGTTTGGT TERM 6 2479 - 2465 - f 77 -10 -3.69482 | opp_overlap 2458 2463, overlap 2458 GCAGTCAAGACATAA CTGTCG TTT CGACAG GCGCTTTTGCTTTGC TERM 7 2551 - 2533 - f 80 -11.6 -3.32997 | opp_overlap 2550 CTGCTATAAATGTAA CGACGCCC TTT GGGCGGCG GCCGATGACGCTCGG repC 2556 - 3833 + | replication protein C Avi_9004 4780 - 3839 - | DNA invertase TERM 8 5124 - 5151 + H 75 -5.4 -4.60255 | opp_overlap 5110 5111 ATCCTGCCAGCGCCG GACAGGCTCGCC ATTT GGGGTGGCTGTC TTTTTCGAGCGTTCT exsG 6113 - 7192 + | two component sensor kinase TERM 9 7404 - 7429 + T 100 -9 -5.40004 | opp_overlap 7403 7404 AGTCATAATCGAAAG CCCGGTGC ACCTCCTCCC GCACCGGG TTTTTTCGTTTCCTC Avi_9008 8633 - 7500 - | phage integrase family protein TERM 10 8689 - 8644 - H 89 -13 -3.29511 | gap 1, opp_overlap 8650 8653, overlap 8653 GCCATTTCTTCATAA TGAG-CATAATGTCCGATAAT GCAAG ATTATCGGACATTATTTCTCA CCGACAGGGCGTGCG TERM 11 8650 - 8682 + H 100 -15.2 -3.85698 | opp_overlap 8644 8653, overlap 8653 TCTTCATAATGAGCA TAATGTCCGATAAT GCAAG ATTATCGGACATTA TTTCTCACCGACAGG TERM 12 8679 - 8653 - H 86 -12.5 -3.48684 | opp_overlap 8650 8653, overlap 8644 TCATAATGAGCATAA TGTCCGATAAT GCAAG ATTATCGGACA TTATTTCTCACCGAC TERM 13 8653 - 8679 + H 95 -12.5 -4.06419 | opp_overlap 8653 8644, overlap 8650 TCATAATGAGCATAA TGTCCGATAAT GCAAG ATTATCGGACA TTATTTCTCACCGAC TERM 14 9009 - 9019 + G 83 -8.2 -4.65916 | opp_overlap 9002 GGAAGAAACCGGTAT CCGC GAC GCGG TTTTGTTGACGTCCG TERM 15 9495 - 9507 + G 75 -10.5 -3.63694 | AGTGGACATCGACCG CCGCG CTG CGCGG TTGTTGACCGTCGCT Avi_9009 8746 - 9711 + | hypothetical protein TERM 16 10385 - 10364 - g 100 -15.9 -4.85782 | CGGTTCAAAAAGAAA TCGCCGCCT CGGA AGGCGGCGA AAGCGACGCGGACGA Avi_9010 9973 - 10422 + | hypothetical protein Avi_9011 10786 - 10412 - | hypothetical protein TERM 17 10797 - 10829 + r 91 -11.3 -4.14392 | opp_overlap 10789, overlap 10790 GACATCACGTCACTC CAGATCGAGGGACTG CTT CAGTTCATCGATCCG TTTTGACGCTTCCGC Avi_9013 11003 - 10791 - | Translation initiation factor 2 (IF-2; GTPase) Avi_9014 11140 - 11832 + | hypothetical protein TERM 18 12299 - 12283 - T 72 -5.1 -4.51847 | overlap 12278 AAACAACGGATAAAA CGATCGT CGT ACTATCG CCAGATTACCTAAAC Avi_9019 14274 - 13900 - | transposase Avi_9020 15093 - 14326 - | integrase/recombinase TERM 19 15321 - 15301 - R 71 -11.1 -2.90901 | opp_overlap 15296 ATATCTCCAATCACA GGCCCGACA CCG TGCCAGGCC AGGTGATCAATTTAT TERM 20 15609 - 15578 - R 72 -8.1 -3.87994 | gap 1, opp_overlap 15579 ACGGATCGCGAGAAA CGGCAAT-GGAAAC CGGCT GTTGCCTATTGCCG ATACGCTGACGACTT TERM 21 16174 - 16160 - R 83 -10 -4.14013 | GAAAAGCGTTGAAAA GGCTTG TCT CAAGCC CCAAAGCGCAATTCC TERM 22 16371 - 16327 - R 90 -15 -2.74514 | gap 1, opp_overlap 16344, overlap 16344 TGAAAGGTGCAAGTA CGGTTCGGGGAGGAGAAGCGC ATCT GCGCTTCTCCTCCACTT-CCG ATGGCTCGCGGTTTT Avi_9026 17995 - 17042 - | sensory transduction histidine kinase TERM 23 17404 - 17377 - G 72 -9.1 -3.93136 | opp_overlap 17403 ACAGCGAGCGATAAA GCAGGGCGAGT GCCTCG ATCCGCCCTGC AAGCTGCGCAAACCG Avi_9028 18475 - 18104 - | two component sensor kinase/response regulator hybrid Avi_9030 19432 - 18707 - | hypothetical protein Avi_9035 22341 - 21766 - | transposase IS4 family protein Avi_9036 22726 - 22412 - | hypothetical protein Avi_9037 23098 - 24783 + | hypothetical protein Avi_9038 24776 - 25312 + | hypothetical protein Avi_9039 26138 - 25407 - | transposase TERM 24 25902 - 25921 + g 75 -9.2 -3.90112 | TTTGTCGCCAAGCTT TCCGGCCG ATCG CCGCCGGA TTTCATTGGCAAAGC cvgS 28268 - 26163 - | two component sensor kinase/response regulator hybrid TERM 25 28216 - 28189 - G 81 -12.8 -3.55622 | gap 1, overlap 28190 CCTAACCCCGTGAAA CTCCAGTCGATCG TGT CGATCGACCGG-G CCAGGTCCCCACGCC TERM 26 28216 - 28190 - G 73 -13 -2.73159 | overlap 28189 CTAACCCCGTGAAAC TCCAGTCGATCG TGT CGATCGACCGGG CCAGGTCCCCACGCC Avi_9042 29355 - 28639 - | transposase TERM 27 29060 - 29045 - G 82 -6.1 -4.77567 | ACGTCGAGAACAAAA CCGTC CTGATC GACGG CGCGCCAGAGCCAAT Avi_9043 29999 - 29502 - | hypothetical protein TERM 28 30058 - 30033 - R 84 -7.5 -4.69962 | GAGAGGAAAAAAGAA GCCAACCCTTT GTGG AGAGGGCCGGC AATGTTAACGGACGT Avi_9044 30977 - 30063 - | hypothetical protein TERM 29 30885 - 30869 - G 77 -7.9 -4.26076 | CCAGTCCGACGAAAA CGCCAGC AAG GATGGCG CCCCACGAGACTTTG Avi_9047 31510 - 30995 - | chemotaxis response regulator TERM 30 31103 - 31068 - G 71 -10.5 -3.53091 | opp_overlap 31068 31066 31065, overlap 31074 ACCGCGCGCCGTAAA TGAGAATGGCAGTGT GGGGTG ACACCGCCGCTCTCA TGCTTTTGAATGGAT TERM 31 31599 - 31616 + H 70 -3.5 -4.67234 | gap 1 GGCTGTCATCTTCGA TCATG-TC TTG GATCATGA TTTTTCGACTTCCGT TERM 32 31909 - 31889 - H 70 -11.1 -2.83403 | overlap 31888 CCCGCTGTATCAAAG GCAGACCGC GGC GCCGTCTGC ACAAGAGTATGATTG TERM 33 31962 - 31919 - H 77 -12.7 -2.80074 | opp_overlap 31929 31929, overlap 31916 GTCTGCACAAGAGTA TGATTGACTAGGAAACTTT CCTGAT ATAGTTTCCTTGTCAATCA CTGGAGAGCCCCATG Avi_9049 31975 - 32436 + | Transcriptional regulator Avi_9050 32650 - 32895 + | Phage envelope protein TERM 34 33912 - 33900 - g 75 -10.5 -3.64703 | TCGTTCGCAGCCAAA GCCCC GTT GGGGC ACTCCGGACCGTTCA TERM 35 34170 - 34154 - g 71 -11.5 -3.18681 | opp_overlap 34158 CGGCAAGGTTATCAA CGACGCG CTT CGCGCCG CAGGGCTAATTCGAT Avi_9052 33087 - 34187 + | polyhydroxybutyrate depolymerase Avi_9053 34433 - 35254 + | hypothetical protein Avi_9054 36870 - 35626 - | hypothetical protein Avi_9055 37198 - 36863 - | hypothetical protein TERM 36 37689 - 37711 + G 73 -12.6 -2.72461 | overlap 37688 CCTCGACGCCATCAT CCGCTGGCTC GGC GCGCCGGCGG CTTTGGAAGACGTTC TERM 37 39196 - 39209 + G 71 -8.1 -4.09685 | CGCCAGCTTCGGCTT TGCCC GCGT GGGCA TTTTCCGACGTCCGA Avi_9056 37429 - 39786 + | hypothetical protein TERM 38 39819 - 39794 - T 78 -12.5 -2.94099 | CCGCTTGATCAGAGA GGGTGGAGCAC TCTG GCGCTCCGCCC ACTCCGGCCGACAGA Avi_9057 40578 - 39913 - | hypothetical protein TERM 39 40921 - 40889 - g 88 -11.3 -4.14392 | opp_overlap 40881, overlap 40909 GCGGAAGCGTCAAAA CGGATCGATGAACTG AAG CAGTCCCTCGATCTG GAGTGACGTGATGTC Avi_9059 40715 - 40927 + | Translation initiation factor 2 (IF-2; GTPase) Avi_9061 40932 - 41306 + | hypothetical protein TERM 40 41323 - 41308 - T 70 -6.1 -4.21974 | opp_overlap 41319 GTATCATTCAATAAA GGACG CTCCTT CGTCC GCGTCGCTTTCGCCG TERM 41 41333 - 41354 + T 100 -15.9 -4.85782 | TCGTCCGCGTCGCTT TCGCCGCCT TCCG AGGCGGCGA TTTCTTTTTGAACCG TERM 42 41811 - 41798 - T 83 -5.2 -5.10461 | opp_overlap 41808, overlap 41787 GCGACGCAACAAAAA GGCG GCCAAG CGCC TGCTGGTGGCGTTGA TERM 43 42035 - 41980 - T 82 -7.5 -4.56597 | gap 1, overlap 41960 42010 TTCCGTTTCGAAAAA GGGAACGAACCA-TGCAGGGCCACCG ATCAA CGGGAGCATTGCAACGGTTCGTCTCC ATGCACTCCGCTACC mcpC 43698 - 42169 - | methyl-accepting chemotaxis protein TERM 44 43709 - 43727 + H 88 -11.6 -3.71848 | GTCATCTTTCTAAGT CGGCGCGC GCT GCCCGCCG TTGTTGATGCAACGC Avi_9066 43937 - 44251 + | IS298 transposase OrfA Avi_9067 44322 - 44717 + | transposase Avi_9068 45976 - 45005 - | transcriptional regulator AraC family Avi_9071 47027 - 46632 - | hypothetical protein Avi_9072 47412 - 47098 - | hypothetical protein Avi_9073 47521 - 48102 + | hypothetical protein TERM 45 48480 - 48461 - T 78 -12.2 -2.87132 | opp_overlap 48461, overlap 48463 48465 TGGGTCGCTGAGATA GACATGCC TCCT GGCATGTC TTCTGATCATGCCGC TERM 46 48461 - 48480 + T 86 -12.2 -3.44051 | opp_overlap 48461 48463 48465 TGGGTCGCTGAGATA GACATGCC TCCT GGCATGTC TTCTGATCATGCCGC Avi_9074 48798 - 48487 - | hypothetical protein Avi_9075 48919 - 50595 + | hypothetical protein TERM 47 51061 - 51087 + G 70 -11.7 -2.74605 | gap 1, overlap 51057 51057 ATGCTGGAGATGTCC TCCGGCAA-GTC TAAA GACCTTGCCGGA TACCTTTTCGGCCAC TERM 48 52399 - 52367 - g 75 -10.5 -3.73224 | overlap 52347 CCATGGTCGAGGAAA CCTCAGCCGCGAGCT TCG AGCTGGCAGCGGAAG CGAGAATACTGCAAG mcpC 50659 - 52497 + | methyl-accepting chemotaxis protein TERM 49 52604 - 52572 - f 86 -6.3 -5.08824 | GCCCTACTGAAAAAA TCACCTCCCCT AAGCAGCTAGA AGGGGTGGTGA AATCCAGATGCAGCA mcpA 52940 - 53986 + | methyl-accepting chemotaxis protein Avi_9079 54054 - 54428 + | transposase Avi_9083 58425 - 55855 - | bacteriophytochrome protein agpT 59395 - 58448 - | transcriptional regulator AraC family TERM 50 58701 - 58668 - G 79 -7.3 -4.65153 | overlap 58669 CGAGAGAAATGAAAA CGGCTAAGCCCGGCG ACGG CGGCCAGCTCAGCCA ATCCTATGGTTTCGT TERM 51 58849 - 58876 + g 86 -5.4 -5.03314 | CATGAAGTTCATCGA CTTGAGGCGCCC TTAC GAGCGCTGCGAG TTTTTTGAGCGTCGC TERM 52 59774 - 59749 - H 81 -10.5 -3.59202 | gap 1 GAGCTTCATAGATAA GAGCGGGTCCGA GGT TCA-ACCCGCTC AAGGCAAAGACGGCT TERM 53 60524 - 60507 - g 73 -3.3 -4.77757 | overlap 60501 60509 CGGTAAAAAGCAAAA CCGCAAG CGAC CTCGCCG TCATCCAGGCCGAAA TERM 54 62040 - 62064 + G 74 -6.9 -4.371 | overlap 62058 CCGGCGTCGAGGCAG CCCGGGCCGGC GAA GCAGGCAAGGG TTTTGCTGTCGTCGC mcpC 60362 - 62647 + | methyl-accepting chemotaxis protein TERM 55 62679 - 62704 + F 100 -11.1 -4.7254 | opp_overlap 62680, overlap 62680 GCTTTGACTTCCAGA AGCGGGGATGC TCAG GCATCTCCGCA TTTTTGATACGCCGT TERM 56 62680 - 62703 + F 100 -14.6 -3.43042 | opp_overlap 62680, overlap 62679 CTTTGACTTCCAGAA GCGGGGATGC TCAG GCATCTCCGC ATTTTTGATACGCCG TERM 57 62703 - 62680 - f 83 -12.4 -3.31144 | opp_overlap 62680 62679 CTTTGACTTCCAGAA GCGGGGATGC TCAG GCATCTCCGC ATTTTTGATACGCCG TERM 58 62789 - 62804 + F 82 -9 -4.25104 | AGTGCCGCTGATCTA CCACTG AAGG CAGTGG TTTTCGTGCGGCCAA TERM 59 63484 - 63509 + F 78 -9.1 -3.96148 | gap 1 GGCAGAACCGGCTGC TCGCG-ATCCAG TGC CTGGATTTGCGA TTTCTCATCCACGCA TERM 60 64414 - 64397 - f 72 -4.8 -4.62336 | overlap 64405 AGGCGAGCCGAAAAA GCCGAA AACGGG CTCGGC CACGCGCCCGCAGCA TERM 61 64424 - 64405 - f 93 -10.6 -4.31329 | overlap 64397 CGAAAAAGCCGAAAA CGGGCTCG GCCA CGCGCCCG CAGCACGCACCGTCG Avi_9093 64855 - 65088 + | hypothetical protein TERM 62 65604 - 65625 + T 74 -2.1 -5.03314 | overlap 65605 GAGATCGGCCTGCCA TTGCGCTTG CTGT CGCGCGCAC TTTTTTCGAGATCGG Avi_9096 67127 - 66774 - | transposition-related protein Avi_9097 67612 - 67124 - | TRm1a transposase Avi_9098 69096 - 67960 - | bacteriophytochrome protein cheB 69665 - 69096 - | protein-glutamate methylesterase TERM 63 69379 - 69401 + g 73 -12 -3.06501 | opp_overlap 69381 69383, overlap 69381 69383 ACTTCCTCGTCAGAC GACAGCGCGA TGG TCGCCCTGTC TTCGATCAACATGTG TERM 64 69577 - 69560 - G 77 -7.7 -4.32034 | GGACGACCACGAAAA CCGGATA TGGA TACCCGG ACGGAAGCGAGGGAA cheR 70495 - 69662 - | chemotaxis methyltransferase TERM 65 69776 - 69734 - G 82 -8.5 -4.4891 | overlap 69735 69769 CTCATGACGAGAAAA CCGCAAC-GTCTCCTTGGAGC CCA GC-CCGAGGAAACCGTTGCGC GGCAGCGCGTCCCTA TERM 66 69775 - 69735 - G 75 -12 -3.28864 | overlap 69734 69769 TCATGACGAGAAAAC CGCAAC-GTCTCCTTGGAGC CCA GC-CCGAGGAAACCGTTGCG CGGCAGCGCGTCCCT Avi_9103 73929 - 70492 - | multi-sensor hybrid histidine kinase TERM 67 71314 - 71304 - G 70 -4.6 -4.56133 | opp_overlap 71304 71309, overlap 71299 71298 CCTCAACAATCAAAA CGCG GCG CACG TTCTGCGATATTTTT Avi_9104 74206 - 74586 + | hypothetical protein Avi_9105 74603 - 75058 + | hypothetical protein Avi_9106 75091 - 75744 + | hypothetical protein TERM 68 75889 - 75872 - g 71 -6.9 -4.14243 | opp_overlap 75871 GACGCTATTCGAAAA GCGTCGG GGAG CCGAAGC ATTGATGAAGCGTGA Avi_9108 75741 - 76172 + | pilT protein, N-terminal Avi_9109 77067 - 76207 - | hypothetical protein Avi_9114 79436 - 79068 - | transposase protein TERM 69 79474 - 79494 + r 72 -5.3 -4.56597 | opp_overlap 79469 79468, overlap 79469 79475 CCGCGAGAACGGCCA AGGGCCTGA TCT TCAGCCCCC TTTTTGCGCCGGAGG Avi_9115 79828 - 79451 - | transposase protein moeB 79930 - 80811 + | molybdopterin biosynthesis protein TERM 70 80816 - 80845 + F 85 -2.8 -5.38047 | opp_overlap 80820, overlap 80820 CTGATAAATAATCAT GATATCCAGAAC GTTGAG GTTCTGGCTGAC TTTTTTCTGTGGGTA Avi_9117 80928 - 81428 + | hypothetical protein pykA 83116 - 81683 - | pyruvate kinase TERM 71 82877 - 82887 + g 71 -6.8 -4.11484 | CCCGTCGGCAATGGT TCCG ATC CGGA TTTTCGGGCCTTGGA Avi_9119 84358 - 83123 - | hydroxypyruvate reductase TERM 72 83469 - 83491 + g 83 -9.8 -4.32857 | opp_overlap 83465 83464 83469 83472, overlap 83465 CCGGAGAGAATGACA GCAGGACCGG AAA CCGGTTCTCC TTTCTGTTTCGCCGA Avi_9120 85476 - 84388 - | tartrate dehydrogenase Avi_9121 86796 - 85498 - | MFS permease Avi_9122 86920 - 87834 + | transcriptional regulator LysR family gntK 88753 - 88238 - | gluconokinase idnO 89671 - 88901 - | gluconate 5-dehydrogenase Avi_9125 91161 - 89674 - | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 73 90831 - 90880 + g 86 -12.2 -4.07885 | gap 2, opp_overlap 90852 CCGGCGATGGATCTA CCTTG-GGTC-GCGGCGAACCCAC GGCG GAGGCTTCGCGGCCGACCGCAAGG TTTTCAAGCACGGTC rbsC 92210 - 91158 - | ABC transporter membrane spanning protein (ribose) TERM 74 92332 - 92303 - R 76 -9.1 -3.74693 | opp_overlap 92303 92321 CTGGATTCTATTAAA GTGGGCGGCTCGC CGAA GCCAGCCGCCAGC GCTGGATTACTTTCC Avi_9127 93454 - 92339 - | sugar ABC transporter (sugar-binding protein) TERM 75 92862 - 92877 + g 71 -10.4 -3.50853 | TCCGGGCCGCCGCTA CCGAGG GCCA CCTCGG TTATGGTTAGCCGCA hyuA 93805 - 95847 + | hydantoin utilization protein hyuB 95913 - 97835 + | hydantoin utilization protein Avi_9130 97851 - 99242 + | aminotransferase Avi_9131 99284 - 100354 + | transcriptional regulator LacI family Avi_9132 101066 - 100905 - | transposase TERM 76 101102 - 101116 + r 77 -2.7 -5.13741 | opp_overlap 101092 101102 TGCAAGTGGCAAAAC GCCTC CATTA GCGGC TTTTTCTTGGGTTCG tnp 102495 - 101338 - | transposase TERM 77 102335 - 102360 + g 75 -9.1 -3.99324 | gap 1 GTCTTACCGCTACTG TCCTGCA-CCAC CAG GTGGCTGTAGGA TTTGTGATAGTCGAC Avi_9135 103074 - 102532 - | transposase Avi_9140 105196 - 104195 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 78 104537 - 104518 - G 78 -8.6 -4.23674 | opp_overlap 104528, overlap 104525 TCCGACCAAGATAAA GTACAACC ACCC GGTTGCAC AGGTGCTTCACGACC dppD 106836 - 105193 - | ABC transporter nucleotide binding/ATPase protein dppB 107954 - 107004 - | ABC transporter membrane spanning protein (dipeptide) TERM 79 107088 - 107073 - G 71 -7.6 -3.99592 | ATTGAGGAGCACAAA GACGAT CGAA ATCGTC ATGATGATGCCAACC TERM 80 108049 - 108020 - R 100 -19.3 -4.66535 | opp_overlap 108021 108023 AATGCCGAAAACAAA TCAGGCGACCGGC AGTA GCCGGCCGCCCGA CGCCTCGTTAACTAA Avi_9144 109584 - 108061 - | ABC transporter substrate binding protein (oligopeptide) TERM 81 109118 - 109132 + g 79 -5.6 -4.77036 | overlap 109119 GCCAGGAGTTGGGTC ACCGTC ACC GACGGG TTTTTCATGATGACC Avi_9145 110845 - 109964 - | transcriptional regulator GntR family TERM 82 111301 - 111284 - g 72 -8.4 -3.79747 | GGACTGACCACGAAA CCCGAG TCTGAG CTCGGG CAGGTCTCCGATTCA Avi_9146 110960 - 111943 + | yurP TERM 83 112076 - 112044 - f 100 -14.9 -3.61178 | GTGAGCGATGCGAAA CTGACCAGCCCCA CGATCTC TGGGGCTGGTCCG AAAGCCACCGAGGCG Avi_9147 112114 - 112980 + | Sugar kinase ribokinase family TERM 84 114299 - 114270 - g 71 -12.9 -2.57881 | gap 1, overlap 114269 GAACTCGCTGAGAAG GCCC-TGAAGTCGG TTG CCGACCCCATGGGC AAGTCGATTGAGGCC hyuA 113085 - 115148 + | hydantoin utilization protein hyuB 115141 - 116841 + | hydantoin utilization protein TERM 85 116865 - 116853 - f 77 -6.9 -4.53439 | overlap 116855 116856 GTAAACGGAAACAAA CAGGC AAG GCCCG GCAGGCAGGTCTCGC Avi_9150 116912 - 117685 + | dinucleotide-utilizing enzyme ilvA 117724 - 118692 + | threonine dehydratase TERM 86 119056 - 119070 + G 72 -5.6 -4.41353 | TGATCATTACCCCCG GAACGC AAG GCGCTC TTTTCCTGTCTGTCG Avi_9152 118728 - 119957 + | Aspartate/tyrosine/aromatic aminotransferase Avi_9153 120104 - 120742 + | hypothetical protein Avi_9154 120739 - 121224 + | hypothetical protein TERM 87 121711 - 121726 + G 72 -6 -4.3467 | ACTGCACGCTTGAAC CGACCG AAGA CGGCCG TTTTGCTGTGCGGCT TERM 88 121803 - 121778 - g 77 -13.3 -2.93073 | gap 1, overlap 121775 GCTGGCGAACAAGCA CG-GGGCGGCAA TCG TCGCCGCCCGCG AGGATCAGCCGTTCG TERM 89 122319 - 122352 + G 74 -12.5 -2.87564 | gap 1, opp_overlap 122318 122319 ACCTTCGAGAAATAC CGCCGCGTCGTGCTTG GCG CAGGCATGAT-CGGCG TCTATGGCAAAATCC dnaE 121509 - 122600 + | DNA polymerase III alpha chain TERM 90 122657 - 122631 - f 100 -8.7 -5.40072 | gap 1, opp_overlap 122633, overlap 122633 TTCGCGCCAAAAAAA TAGGGCCATCGG AATA CCGA-GGCCCTT TAATTGTGAAGGTCA TERM 91 122633 - 122655 + F 90 -11.3 -3.99678 | gap 1, opp_overlap 122631 122633 CGCGCCAAAAAAATA GGGCCATCGG AATA CCGA-GGCCC TTTAATTGTGAAGGT TERM 92 122655 - 122633 - f 95 -11.3 -4.34482 | gap 1, opp_overlap 122633, overlap 122631 CGCGCCAAAAAAATA GGGCCATCGG AATA CCGA-GGCCC TTTAATTGTGAAGGT Avi_9156 123011 - 123358 + | Helicase subunit of the DNA excision repair complex TERM 93 123345 - 123365 + F 81 -12.5 -3.18199 | ATCCTTTCGCCTACG GGCCGGCTC ATT GAGCCGGCG TTGCCTTGCCGCTTG Avi_9158 123569 - 124531 + | hypothetical protein Avi_9160 124737 - 125276 + | hypothetical protein Avi_9161 125291 - 125692 + | hypothetical protein TERM 94 126376 - 126413 + G 71 -11.3 -3.18264 | gap 1, overlap 126385 GGCGCGGCGGCCGGG TGCTGGAACCGGGCATCG GCA CGG-GCCTGTTTCCGGCA TTGATGCCTGAAGAA TERM 95 126786 - 126799 + G 71 -8.1 -4.08216 | ATCGCGGCAATCCGT CTGCC CGAA GGCAG TTTTCGGCGGGATGC TERM 96 128388 - 128402 + G 93 -12.8 -4.18042 | CATCTTCAACTTCCG GGCGCC TCA GGCGCC TTTACTTTGTATGGC TERM 97 129874 - 129844 - g 75 -3.8 -4.81814 | opp_overlap 129851, overlap 129845 129849 AGGAGTACAAGAAAA CCGAAGCCAAGCAG CGC CTGTTTGGCGACGT CCGCGCCGGCAAGGT Avi_9162 125793 - 130886 + | helicase SNF2 family TERM 98 130925 - 130962 + T 95 -9.2 -4.85782 | opp_overlap 130930, overlap 130930 TTGTAGCGGTACCAC GAGAATGGCTATCTCC CGCGAA GGAGGCGGCCATTTTC TTTGTTTTTCAGCCG TERM 99 130930 - 130957 + T 91 -5.5 -5.3167 | opp_overlap 130930, overlap 130925 GCGGTACCACGAGAA TGGCTATCTCC CGCGAA GGAGGCGGCCA TTTTCTTTGTTTTTC Avi_9163 131879 - 131019 - | hypothetical protein TERM 100 133610 - 133620 + G 75 -5.4 -4.58466 | AGCAAACATGGGCTC GGAA GAT TTCC TTTTGTGCTTGTCGC parB 132159 - 133997 + | chromosome partitioning protein TERM 101 134029 - 134057 + F 100 -20.3 -4.19735 | opp_overlap 134025 CTTCCGAATGATCTG CCGCCGCCGATGG TCT CCATCCGCGGCGG TTTCGTTTTCAAACC Avi_9166 134098 - 134568 + | hypothetical protein TERM 102 134637 - 134591 - g 81 -13.1 -3.48276 | gap 1, opp_overlap 134629, overlap 134593 134594 134628 134629 TCTGTCCCCAGACAA TACCGCCG-GCTCTACCCCTGA ATAT TCAGGGGTAGAATTCGGCGTCA GTGCCGATGGCTTTC TERM 103 134635 - 134593 - g 82 -13.5 -3.31726 | gap 1, opp_overlap 134629, overlap 134591 134594 134628 134629 TGTCCCCAGACAATA CCGCCG-GCTCTACCCCTGA ATAT TCAGGGGTAGAATTCGGCGT CAGTGCCGATGGCTT TERM 104 134634 - 134594 - g 85 -17 -2.58822 | gap 1, opp_overlap 134629, overlap 134593 134591 134628 134629 GTCCCCAGACAATAC CGCCG-GCTCTACCCCTGA ATAT TCAGGGGTAGAATTCGGCG TCAGTGCCGATGGCT TERM 105 134722 - 134745 + G 71 -10.2 -3.55444 | GCGGGTTTCTGGCGA GCGCATGGCG TCAG CGCCGTCCGC TTTGCGACCTGACCC Avi_9167 134565 - 135455 + | hypothetical protein TERM 106 135628 - 135644 + G 74 -7.9 -4.14243 | AGGATCACGCTGGAC GCCGTCC GAC GAACGGC TTTTCCAGTCCCATC Avi_9168 135452 - 136147 + | hypothetical protein TERM 107 136563 - 136515 - f 91 -11.6 -4.07568 | gap 1, opp_overlap 136515 CCGCTCTCGGCAAAA CAGGTAAGCGGGCTTCGCAGGGC TATT GCCCCGCTT-GACCGCCCACCTG CTTTTCTCGATCTGG TERM 108 136600 - 136613 + F 71 -9.5 -3.51232 | CGGACCCTGAACCGC CCGGC TTGC GCCGG TTCCTTTCGACCGCA TERM 109 137263 - 137243 - g 82 -14.7 -2.87463 | AATCCCGGCCAGACA CTCGACCGC AAG GCGGCCGAG GCACAGATGGACGCT Avi_9171 136688 - 137287 + | hypothetical protein TERM 110 137297 - 137317 + F 100 -16.9 -4.72272 | GGCTGAGATTTATCC GGCGGAGCA CCT TGCTCCGCC TTTTTCGTGACGAGG TERM 111 137330 - 137354 + F 95 -9.2 -4.99035 | overlap 137331 GCCTTTTTCGTGACG AGGCCGCCTT ACTCC GAGGCGGCCA TTTTTGTGTCACTGC TERM 112 137331 - 137353 + F 88 -12.7 -3.58698 | overlap 137330 CCTTTTTCGTGACGA GGCCGCCTT ACTCC GAGGCGGCC ATTTTTGTGTCACTG TERM 113 137443 - 137410 - f 76 -11 -3.27828 | opp_overlap 137413, overlap 137406 137408 137413 AAAGAAATGAAGAGA GAACGGAACACGGC ATTGCG GCCCCGTCCCGTTC GTCGGACCTGCAGGA TERM 114 137547 - 137591 + F 77 -9.9 -3.57144 | gap 2 GCTCCTGCTTTCGGC CCTCCGCGAC-GG-GGCCGCG ATGGG CGCGGCCTCCTGACAAGGAGG TTTGGACATGACAAG TERM 115 137687 - 137676 - g 71 -7.2 -4.11216 | CGCTGACCTGGAAAA GGGC GTAC GCCC ATGGGTGCAGCCGTG TERM 116 138447 - 138474 + G 71 -12 -2.9176 | gap 1, overlap 138445 GGCGATCTTCAATGC GGCGGCGCATGCG CAG CGC-TGTGTCGCC TATCTGCATGACCTT ardC 137593 - 138525 + | antirestriction protein TERM 117 138661 - 138646 - g 71 -10.4 -3.57462 | opp_overlap 138638 CAGCGCATGGTGAAA TCGGGC TGAT GCCCGA CTGCGCGATCTTCGC TERM 118 138912 - 138939 + G 88 -13.4 -3.67792 | opp_overlap 138911 138910, overlap 138914 GAACTCGTCGAAATC GGGTCTCGCGCG ACAT CGCGCGAGACTG TTTCCATCGGTATGA TERM 119 138914 - 138937 + G 100 -18.2 -3.41836 | opp_overlap 138911 138910, overlap 138912 ACTCGTCGAAATCGG GTCTCGCGCG ACAT CGCGCGAGAC TGTTTCCATCGGTAT Avi_9174 138522 - 139493 + | hypothetical protein TERM 120 139929 - 139958 + F 72 -7.1 -4.1822 | gap 1, overlap 139930 GACGCCTTCGTCTCG ATCGCCT-TGGCCG CAA CGGCCATACGCGAC TTTCTTCCCCTGCCG TERM 121 139930 - 139957 + F 72 -10.6 -3.10611 | gap 1, overlap 139929 ACGCCTTCGTCTCGA TCGCCT-TGGCCG CAA CGGCCATACGCGA CTTTCTTCCCCTGCC Avi_9175 140093 - 140449 + | hypothetical protein TERM 122 140460 - 140483 + F 100 -16 -4.34402 | opp_overlap 140462 CCTGATCACTGCAAC GAGCTCCGCC GAAA GGCGGGGCTC TTTTCGTGTCGCGAG TERM 123 140481 - 140462 - f 70 -10.6 -2.74012 | opp_overlap 140460 TGATCACTGCAACGA GCTCCGCC GAAA GGCGGGGC TCTTTTCGTGTCGCG TERM 124 140504 - 140534 + F 100 -19.7 -4.62069 | GTGTCGCGAGGGAGA GCCGGGCGCAGGC ATCGA GCCTGCTCCCGGC TTTTTGGGGTGCCAC TERM 125 140858 - 140824 - g 78 -14.3 -2.52933 | gap 1, overlap 140823 GCCGAACTCAGGAAT GCCTGCGATCCGGCCG AGCG CCGCCAGATCGC-GGC GGAGCTAGAGATGGT Avi_9177 140770 - 140940 + | hypothetical protein TERM 126 140928 - 140945 + T 75 -11.3 -3.10715 | opp_overlap 140928, overlap 140908 CCGCGTCAGCACGAA GCCTCCT TTCT AGGAGGC TTCCATCATGCTGCC TERM 127 140945 - 140928 - T 77 -11.3 -3.21099 | opp_overlap 140908 140928 CCGCGTCAGCACGAA GCCTCCT TTCT AGGAGGC TTCCATCATGCTGCC TERM 128 140951 - 140976 + T 80 -13.3 -2.53213 | TCTAGGAGGCTTCCA TCATGCTGCCG CTTC CGGCAGCGTGG TCGCTTCAGCCGTTC Avi_9178 141260 - 140982 - | HNS-type DNA binding protein Avi_9182 141655 - 141398 - | hypothetical protein TERM 129 141796 - 141816 + r 74 -11.1 -3.18274 | opp_overlap 141800, overlap 141785 141801 TATGCGCAGGCGCAC CGAACCCGC CAT GCGGTTTCG TTCCATTCGGATAAC TERM 130 141801 - 141811 + r 74 -8.2 -3.95986 | opp_overlap 141800, overlap 141785 141796 GCAGGCGCACCGAAC CCGC CAT GCGG TTTCGTTCCATTCGG Avi_9184 142276 - 141893 - | nuclease protein Avi_9185 142671 - 142273 - | hypothetical protein traG 144638 - 142668 - | Ti-type conjugative transfer system protein TraG traD 144870 - 144625 - | conjugal transfer protein Dtr system TERM 131 144662 - 144679 + gr 73 -11.3 -2.77701 | opp_overlap 144646, overlap 144658 GCCTCCACGCCGATG GCGGTCA AACG TGACCGC TCGTCTTCGTCGCCT traC 145222 - 144845 - | conjugal transfer protein Dtr system TERM 132 145163 - 145190 + gH 100 -16.4 -3.16191 | TGGTTCTCCTTGAGA TTCTGGCGTTGC ACTC GCGACGCCAGAA TTCCTCCGGATGTCA TERM 133 145303 - 145318 + H 70 -10.4 -3.13403 | opp_overlap 145303, overlap 145301 AAGGGCGCAATTATA CGTCGC TGGC GCGACG TCTTGCTCAGACGCC TERM 134 146016 - 146042 + G 73 -11.7 -3.14132 | gap 1 CCATCTGGCCCTCGG CGG-CATCGATC TCAG GATCGATGGCCG TTCCTACAAAAAGCA TERM 135 146822 - 146798 - g 93 -9.9 -4.77165 | TGCTCGACAATAAAA CCGTCTTCGTC ATG GACGAGGCCGG CATGGTGGCCTCGAA TERM 136 148191 - 148167 - g 79 -13.5 -3.14344 | TATTCTGGCCAGCAA GACGGAGCGCG AGG CGCGCCGCGTC GCAGAGGTCAATGTT traA 145321 - 148692 + | Ti-type conjugative transfer relaxase TraA traF 148689 - 149219 + | conjugative transfer signal peptidase TraF traB 149236 - 150447 + | conjugal transfer protein Dtr system traH 150465 - 151091 + | conjugal transfer protein Dtr system traM 151405 - 151713 + | transcriptional repressor traR 152477 - 151773 - | transcriptional regulator TERM 137 152461 - 152476 + g 78 -3.2 -5.10497 | overlap 152463 AGATCGGTCAGCCTG TCCAGC CAGT GCTGCA TTTTTTCACTCCGTT Avi_9196 153658 - 152864 - | hypothetical protein Avi_9197 154812 - 153733 - | ABC transporter nucleotide binding/ATPase protein TERM 138 153801 - 153789 - G 71 -10.5 -3.53563 | opp_overlap 153789 ACAGGTCCGGGGAAA GGCGC ACC GCGCC TGTAGTGAGAGATTG TERM 139 154472 - 154456 - G 72 -5.1 -4.59773 | overlap 154457 CCCGATCTGCAAAAA TCGCG CCGTTTC CGCGA CACGCTGCGCGATCT Avi_9198 155693 - 154815 - | ABC transporter TERM 140 155019 - 155006 - G 78 -6.7 -4.56597 | TGCTGCCCGCAAAAA TCAGC CCGA GCTGA AAGTCGTTCCAGATG Avi_9199 156562 - 155690 - | ABC transporter membrane spanning protein (sugar) Avi_9200 157757 - 156633 - | ABC-type sugar transport system periplasmic component Avi_9201 157922 - 159064 + | transcriptional regulator GntR family Avi_9202 159826 - 160521 + | hypothetical protein TERM 141 161070 - 161085 + T 72 -6.8 -4.25104 | gap 1, opp_overlap 161070 161073 CCAGGCGGTATCAGA CGAGCCG AAA CGGC-CG TTTTGCTCACGCGGC fabG 162000 - 161260 - | 3-oxoacyl-(acyl-carrier protein) reductase Avi_9208 162929 - 161997 - | nucleoside-diphosphate-sugar epimerase TERM 142 163947 - 163974 + H 72 -7.6 -3.86015 | opp_overlap 163935 TGAGGTTGCTGCTCC CCTCGGCGGATG AGAG CATCTGCCCTGG TTTGTCGAAGAGCTA TERM 143 164249 - 164261 + G 79 -6.9 -4.57837 | opp_overlap 164241 164243, overlap 164243 GAAGAATGACCGTCA GTCGC TTG GCGGC TTTTTGGAGCGGTAT tnp 164040 - 165197 + | transposase Avi_9214 165466 - 166023 + | transposase for insertion sequence TERM 144 167803 - 167817 + G 72 -8.6 -3.88787 | GTTCTCACGATCATC GATCTC GCC GAGATC TTTATGGAAATCTAC Avi_9216 167092 - 168162 + | HlyD family secretion protein TERM 145 168541 - 168569 + G 72 -4.4 -4.68593 | gap 1, opp_overlap 168541 CCATTCGTACAGAGA GGCTGGC-GACCG CCAC CGGACTGCTCGCC TTTTTGGATCGTCCC TERM 146 169562 - 169580 + G 73 -13.2 -2.79098 | opp_overlap 169559 169556, overlap 169559 169564 TTTTATGAACGAGGC GATGCGGT GCG ACCGCATC TCGTTGATGCATGCC TERM 147 170641 - 170664 + G 74 -13.8 -2.65264 | opp_overlap 170635 170633, overlap 170651 TCACCAAGAGCCAGG TCGCCGCCGT CTTC GCGGCGGCGG TGCTGTCGCTACTGC Avi_9217 168165 - 170906 + | ABC transporter nucleotide binding/ATPase protein Avi_9218 170909 - 172033 + | ABC transporter TERM 148 172121 - 172104 - f 76 -10.5 -3.32159 | opp_overlap 172101, overlap 172099 TCACACCAAACGCAA CGCCCGA GTGA CCGGGCG AAGGATTTTCTATTC pntA 172654 - 173796 + | NAD(P) transhydrogenase alpha subunit Avi_9220 173793 - 174101 + | NAD/NADP transhydrogenase alpha subunit TERM 149 174523 - 174555 + G 76 -12.8 -3.05384 | overlap 174531 CACTCGCCGGCGCTT TGATCGGGTCGGTC TCTCT GACCGGTTCGATCA TTGCCTGGGCCAAGC TERM 150 174691 - 174713 + G 72 -9.9 -3.71848 | gap 1, opp_overlap 174675, overlap 174701 GTGCGGGTGGCGCCG CAGCACC-CC TCGT GGCGGTGCTG TTCTTCGTCGCCGCG pntB 174105 - 175538 + | NAD(P)+ transhydrogenase beta chain TERM 151 176271 - 176261 - g 86 -5.4 -5.03747 | opp_overlap 176269, overlap 176262 176265 AAAGCGCTGAAAAAA TCCA CCA TGGA GCTCGGCGGTGCCGA TERM 152 176393 - 176419 + G 75 -9.4 -3.86524 | overlap 176394 TCCTCCAAGCGCATG ATCGTCGTCGAC ACC GTCTACGACGAA TTTCTCGACCGCTAT TERM 153 176394 - 176418 + G 74 -12.9 -2.91593 | overlap 176393 CCTCCAAGCGCATGA TCGTCGTCGAC ACC GTCTACGACGA ATTTCTCGACCGCTA attK 175580 - 176971 + | NAD-dependent succinate aldehyde dehydrogenase adhP 176968 - 178011 + | alcohol dehydrogenase TERM 154 178376 - 178343 - T 75 -11.8 -3.03159 | gap 1, overlap 178332 178364 CGAAGCGGTGGAACA GCC-TGGCACGACTT GAAGG AAGCCGCGCCACGGC AGCCTGGGTGAAGGA Avi_9225 179215 - 178928 - | transposase Avi_9227 179709 - 179212 - | transcriptional regulator TERM 155 179679 - 179691 + g 70 -4.1 -4.70117 | GCCGGCTGCTAATAT GTGTA GTT TGCAC TTTCTTTGTTGACTT TERM 156 180716 - 180737 + G 76 -12.9 -3.14564 | GAAGCTGGCGGCGGT CGCGACCGG CGCG CCGGCCGCG TTGCTCGACAGCTAC Avi_9228 179754 - 181268 + | monooxygenase TERM 157 181373 - 181362 - T 77 -7.2 -4.57073 | overlap 181364 CAGGCTGTGCAAAAA CCCC ACCC GGGG GCGCCACCACAGCCA Avi_9229 182365 - 181736 - | transcriptional regulator TetR family TERM 158 182401 - 182367 - H 90 -14.4 -2.82635 | opp_overlap 182350, overlap 182370 ATGGCGACCACCATA CTATGGCGATCACCAT AGT ATGGTGGTCGCCATAT GAGGAGTTCGGCAAT TERM 159 182398 - 182370 - H 100 -16.1 -2.67515 | opp_overlap 182350, overlap 182367 GCGACCACCATACTA TGGCGATCACCAT AGT ATGGTGGTCGCCA TATGAGGAGTTCGGC TERM 160 182463 - 182485 + H 70 -9.8 -3.17075 | GCCGTCTTGGCAATG GGCGCAGCCA GCC TGGTTGCGGC TTCACTTCGCGCGGC Avi_9230 182583 - 183698 + | epoxide hydrolase Avi_9231 184567 - 183824 - | tetR-family regulatory protein TERM 161 184110 - 184062 - G 81 -12.5 -3.53012 | gap 1, opp_overlap 184060 184058, overlap 184063 GCTTCGTTGCGCAAA GCGCCGATCACGTAGGCGGCGA CGGTGT TCACCGCCTGCATGAT-GGCGT CCATGTCCTTGAACG TERM 162 184109 - 184063 - G 86 -16 -2.71712 | gap 1, opp_overlap 184060 184058, overlap 184062 CTTCGTTGCGCAAAG CGCCGATCACGTAGGCGGCGA CGGTGT TCACCGCCTGCATGAT-GGCG TCCATGTCCTTGAAC Avi_9233 184708 - 185838 + | Monooxygenase FAD-binding TERM 163 187158 - 187142 - T 72 -5.1 -4.56597 | overlap 187144 TTCTCGTCTCAAAAA GCCTTCA TAT TGAAGCC GTTCAGCGGAAGTCA Avi_9237 188836 - 188108 - | ABC transporter nucleotide binding/ATPase protein Avi_9239 189540 - 188833 - | ABC transporter membrane spanning protein (amino acid) TERM 164 188936 - 188918 - G 75 -3.9 -4.77896 | GAACTAAGTGAAAAA CAGATTA TGAAG TAACCTG CCGAAGTGATCGCGA Avi_9240 190220 - 189540 - | ABC transporter membrane spanning protein Avi_9241 191073 - 190255 - | ABC transporter substrate binding protein (amino acid) TERM 165 191204 - 191214 + H 77 -3.2 -5.04385 | AGCATGCAAAAATAA CGTT TCA AGCG TTTTTTCCCGGTATG Avi_9243 191370 - 192737 + | hypothetical protein TERM 166 192754 - 192800 + T 72 -6.7 -4.15044 | gap 1, overlap 192759 192782 CGCCGGACGGATGGT TGAGGTTCAT-GGCGACCGCTT TCGG AAGCGGTCGCTGATCAGATTCA TTTCTTCAGCCGACC Avi_9244 193478 - 192798 - | transcriptional regulator GntR family etfB 193815 - 194564 + | electron transfer flavoprotein beta subunit etfA 194588 - 195547 + | electron transfer flavoprotein alpha subunit TERM 167 195753 - 195773 + G 79 -14 -3.06183 | GTTGTCGAACCCGTG GGCGCGCT GCGGA AGCGCGCC TTGGATGCGGGTGCG proC 195555 - 196457 + | pyrroline-5-carboxylate reductase TERM 168 196725 - 196755 + T 76 -3.9 -4.94992 | AGAACCTACAGTTTC GCCTCCGAGACGT TGGCC ACGTTTAGGGAGC TTTTTATAGGTTTAA Avi_9251 197008 - 196892 - | transposase Avi_9252 197317 - 198570 + | phosphonoacetate hydrolase Avi_9253 199517 - 198594 - | transcriptional regulator LysR family Avi_9254 200544 - 200194 - | hypothetical protein trbI 202370 - 201057 - | conjugal transfer protein TERM 169 201124 - 201151 + g 75 -10.6 -3.68183 | overlap 201122 AACCTGTAGCCAGGT TGGATCTCCAGC GTCG GCTGGACGTCCA TGTTTCTCTGTATAG TERM 170 201816 - 201834 + g 71 -8 -4.05033 | GGAAACGCCATTCGT CGTCGCGG CCG CCGTGTCG TTTGTGTCCGCTCCC trbH 202858 - 202382 - | conjugal transfer protein TERM 171 202602 - 202620 + g 70 -12.4 -2.80816 | AGGGCCGCTTCCAGC GCTTGCCC GAA GGGCGAGC TATCCTGCCTCAGCG trbG 203748 - 202858 - | P-type conjugative transfer protein TrbG TERM 172 203647 - 203636 - G 87 -7.2 -4.93877 | overlap 203644 CGTGAGGAAAGAAAA GCCG AAAA CGGC ACGATGACGGCGAGG trbF 204392 - 203730 - | conjugal transfer protein trbL 205603 - 204407 - | P-type conjugative transfer protein TrbL trbK 205818 - 205597 - | entry-exclusion protein TERM 173 205696 - 205660 - G 75 -5.8 -4.58663 | gap 2, overlap 205661 205662 ATCACCGCCGAAAAA GCGCTCTCGATGCTCGCG CTG CGCG-GCACCC-GAGCCC GACGTCCCAGTCGAT trbJ 206624 - 205815 - | P-type conjugative transfer protein TrbJ TERM 174 206582 - 206593 + gr 72 -7.2 -4.25104 | TGGCCGTGATCATAG CGGC GCGC GCCG TTTTAATCGGCCGGG trbE 209064 - 206596 - | conjugal transfer protein TERM 175 207957 - 207982 + gr 76 -7.5 -4.25104 | CGAACCCTTCCGCCT GGATGAGGCGA CGGA TCGCCTCACAC TTTTCCTGAAGGCGC TERM 176 208175 - 208157 - GR 70 -5.9 -4.15222 | opp_overlap 208157 208156 AGCTGGTCGAAGAAA GGCCGCA CCTTC TGCTGCC ATTTCTTGCGGGTGC trbD 209374 - 209075 - | conjugal transfer protein trbC 209771 - 209367 - | conjugal transfer protein trbB 210732 - 209761 - | P-type conjugative transfer ATPase TrbB traI 211367 - 210729 - | autoinducer synthesis protein SEQUENCE gi|222102329|ref|NC_011986.1| Agrobacterium vitis S4 plasmid pAtS4a, complete sequence (length 78730) repA 206 - 1435 + | replication protein A repB 1481 - 2518 + | replication protein B TERM 1 2568 - 2528 - f 70 -6.2 -4.19953 | gap 1, overlap 2534 GACTGAACCGCAAAA GAAAAAGGC-CCCAAAACG ATAC CGTCGTGGAAGCCCTTCTC GATACTAAGCACATC TERM 2 2562 - 2534 - f 93 -3.8 -5.46706 | gap 1, overlap 2528 ACCGCAAAAGAAAAA GGC-CCCAAAACG ATAC CGTCGTGGAAGCC CTTCTCGATACTAAG TERM 3 2710 - 2692 - g 81 -11.6 -3.90949 | AAACAGGAAATATAA CGACGCCC TTT GGGCGGCG ACCGATGACACTCGC TERM 4 2909 - 2886 - g 72 -4.5 -4.59773 | overlap 2889 TTCTATCCGGAAAAA GAACTGCGC CAGGAC GCGCAGCTG GTGGTATTTCCCTCC TERM 5 2906 - 2889 - g 82 -8.4 -4.41633 | overlap 2886 TATCCGGAAAAAGAA CTGCGC CAGGAC GCGCAG CTGGTGGTATTTCCC TERM 6 3426 - 3404 - g 71 -12.8 -2.66733 | overlap 3409 3416 GGGTAATTCAGATGA TGTAAGCACC AAT GGTGCTCACA CAGAGCGCCACATAC repC 2673 - 3887 + | replication protein C Avi_9804 4503 - 4021 - | helix turn helix transcriptional regulator Avi_9805 5581 - 5117 - | hypothetical protein parA 6287 - 5586 - | chromosome partitioning protein TERM 7 6227 - 6238 + g 70 -2.2 -4.72272 | CTCCTGCTAGAAGAA TGAC AGCA GTCG TTTTTCCTGCGCCAC TERM 8 6625 - 6644 + H 70 -4.9 -4.50976 | opp_overlap 6625, overlap 6620 ATTCACATCTAAAAA CCACTCG ACTTAC CGTGTGG TTTTCTCGTGTGACC TERM 9 6644 - 6625 - H 75 -5.6 -4.71061 | opp_overlap 6625 6620 ATTCACATCTAAAAA CCACTCGA CTTA CCGTGTGG TTTTCTCGTGTGACC Avi_9807 6996 - 7397 + | mob protein TERM 10 10154 - 10134 - g 74 -11.1 -3.57418 | overlap 10135 GACGGAGCAAAGGAA GCGCGATCG AGA CGATCGCGA GCGGTGATGGGCCAT TERM 11 10153 - 10135 - g 80 -14.6 -2.73969 | overlap 10134 ACGGAGCAAAGGAAG CGCGATCG AGA CGATCGCG AGCGGTGATGGGCCA traA 7399 - 10161 + | Ti-type conjugative transfer relaxase TraA TERM 12 10393 - 10411 + T 74 -8.8 -3.92592 | CAGGTCGAAGTTTAT CGGCCC TGAGAGC GGGCCG TTTCATATTCAGGCT avhD4 12519 - 10420 - | conjugative coupling protein avhB11 13538 - 12516 - | type IV secretion protein AvhB11 avhB10 14727 - 13519 - | type IV secretion protein AvhB10 avhB9 15536 - 14727 - | type IV secretion protein AvhB9 avhB8 16225 - 15533 - | Type IV secretory pathway component VirB8 avhB6 17289 - 16261 - | type IV secretion protein AvhB6 TERM 13 16869 - 16856 - G 72 -5.9 -4.50583 | overlap 16845 16843 AACATGATCAGAAAA CCGAC CATA GCCGG AAGAACAGAAAAATA Avi_9817 17529 - 17302 - | hypothetical protein Avi_9818 18220 - 17522 - | hypothetical protein avhB1b 19321 - 18233 - | type IV system transglycosylase avhB4 21777 - 19318 - | type IV secretion protein AvhB4 TERM 14 19379 - 19409 + g 71 -11.8 -2.90075 | overlap 19382 GGCTCGTCTCCATAT TGTTCGCGGAGTGC GGC GCACTCCTCGATCG TCTCCTTACGCCCGG TERM 15 19382 - 19406 + g 78 -14.3 -2.69964 | overlap 19379 TCGTCTCCATATTGT TCGCGGAGTGC GGC GCACTCCTCGA TCGTCTCCTTACGCC TERM 16 19907 - 19891 - G 71 -10.1 -3.60098 | overlap 19899 ACTGGTCATGTCAAA GCCGAAC ACC GTCCGGC CAGAGAAGGACAGCA TERM 17 21637 - 21622 - G 75 -5.4 -4.56597 | TTCGGTCTGGAAAAA CAAGCC GTCG AGCTTG ATGACACTGGCGAGT avhB2 22431 - 22081 - | type IV secrection system pilin protein avhB1a 23412 - 22444 - | type IV system transglycosylase Avi_9825 23570 - 24178 + | hypothetical protein TERM 18 24209 - 24242 + G 75 -9.6 -3.84451 | gap 1, overlap 24201 24210 TTATGGCGGCATTGA T-GCCTTCCTGGGCT ATCGC AGCCCCGGAGGGCTA TTTCGATTTAAAGCC TERM 19 24210 - 24240 + G 88 -14.7 -3.50832 | overlap 24201 24209 TATGGCGGCATTGAT GCCTTCCTGGGCT ATCGC AGCCCCGGAGGGC TATTTCGATTTAAAG Avi_9826 24175 - 24714 + | hypothetical protein TERM 20 25368 - 25357 - g 83 -5.8 -4.93365 | TGGCAGAACGAAAAA GCGA AATC TCGC CGCCGTTTGCTGACG Avi_9827 24711 - 25415 + | Micrococcal nuclease (thermonuclease) Avi_9829 25416 - 25796 + | hypothetical protein TERM 21 25840 - 25856 + G 82 -10.1 -4.13767 | GCTCTATATTTTGTC GCCGCAG GTG TTGCGGC TTTTGCCATGACACC TERM 22 25950 - 25935 - g 78 -6.1 -4.58395 | opp_overlap 25936 CGCAGCGTCCAAAAA CCCCT CATGGC AGGGG GTTGGGTACTGCGTG TERM 23 26052 - 26038 - g 87 -12.8 -3.85389 | overlap 26048 TGCGAAGAAGCTAAA GCCGGG AAA CCCGGC CATGAACCTTTTGAA Avi_9830 25801 - 26397 + | hypothetical protein TERM 24 26428 - 26477 + G 80 -9.4 -4.25104 | CCAGAACATTCTACT CGTAA-TCGCTACCGGAGTTGGCA TTGC TGCCGGCTCCGGC-GCAACTTACG TTTTGATGCCGCAGC Avi_9831 26408 - 26833 + | hypothetical protein Avi_9832 27182 - 26850 - | hypothetical protein TERM 25 27330 - 27340 + H 79 -2.4 -5.24531 | overlap 27323 TCACCCACCCGAAGG GCCG CGT CGGA TTTTTTGTAGAAAAT Avi_9833 27576 - 28208 + | Resolvase Protein Avi_9834 29264 - 28344 - | hypothetical protein TERM 26 30243 - 30261 + G 74 -7.4 -4.3534 | opp_overlap 30242 30243 CATCCTCGGGACAAG CCGTCC GCGGAAG GGACGG TTTTAATCGTTGAGA tnp 29463 - 31016 + | transposase Avi_9836 31029 - 31805 + | transposase Avi_9837 32043 - 32372 + | transposase protein tnp 32369 - 33274 + | transposase Avi_9841 35170 - 33821 - | adenylate cyclase protein TERM 27 35216 - 35254 + r 100 -15.2 -4.04394 | opp_overlap 35214 35211, overlap 35217 ATCCGGAGAATGAGG TCGGACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCGC TTTACTTGATTTCCG TERM 28 35217 - 35253 + r 100 -18.7 -3.01914 | opp_overlap 35214 35211, overlap 35216 TCCGGAGAATGAGGT CGGACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCG CTTTACTTGATTTCC Avi_9842 35540 - 35256 - | hypothetical protein copC 36042 - 35563 - | copper tolerance protein TERM 29 36033 - 36021 - G 70 -2.7 -4.77157 | overlap 36010 36022 GGAATGCAGTAAAAA CTACT GTA AGTAA CGTTTTCATTGATTT Avi_9845 36451 - 36182 - | hypothetical protein Avi_9846 36644 - 37321 + | two component response regulator Avi_9847 37308 - 38681 + | two component sensor kinase TERM 30 38759 - 38798 + T 100 -13.6 -4.1958 | gap 1, overlap 38759 GATCACCAGGCGAAT C-TGAACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCGCG TTATTTGATTTCTGT TERM 31 38759 - 38797 + T 87 -13.8 -3.10121 | overlap 38759 GATCACCAGGCGAAT CTGAACGGGCCGAGCGTT TGG AAGGCTCGGCCCGATCGC GTTATTTGATTTCTG Avi_9848 39083 - 38799 - | hypothetical protein copC 39585 - 39106 - | copper tolerance protein copA 40967 - 39618 - | multicopper oxidase TERM 32 40085 - 40059 - G 71 -10 -3.53444 | opp_overlap 40059 GTATTTGGCGTCAAA CTCGTAGGCACG CAT CGCGCCGACGGG TATGTCGATGCTGAC TERM 33 40736 - 40764 + g 75 -10.1 -3.7282 | overlap 40724 CACGCTCCACCGGTT CGGCGACCAGGTG GAA CTCCTTGACGCCG TTGTTCATGCGGTGA copB 42441 - 40981 - | copper tolerance protein TERM 34 42306 - 42320 + g 73 -3.4 -4.87133 | overlap 42308 AAACGGTGTCCTTTC CCGTCG CCT CGGCCG TTTTGTTTGAAACGT Avi_9852 42707 - 42438 - | hypothetical protein Avi_9853 43141 - 42755 - | hypothetical protein Avi_9854 43389 - 43733 + | hypothetical protein Avi_9856 43776 - 44204 + | hypothetical protein Avi_9857 44214 - 44552 + | hypothetical protein TERM 35 44549 - 44596 + T 88 -11.4 -3.85698 | opp_overlap 44555, overlap 44554 CGCTAAAATGGCGGC CTGAAAGTTGGGGGAGAGCA CTCTCACA TGCTCTTCCCCAACACTTAG TTTATCAGGCGACAG TERM 36 44554 - 44591 + T 77 -12.1 -2.75997 | opp_overlap 44555, overlap 44549 AAATGGCGGCCTGAA AGTTGGGGGAGAGCA CTCTCACA TGCTCTTCCCCAACA CTTAGTTTATCAGGC TERM 37 44590 - 44555 - T 95 -14.1 -3.53343 | opp_overlap 44554 44549 AATGGCGGCCTGAAA GTTGGGGGAGAGCAC TCTCAC ATGCTCTTCCCCAAC ACTTAGTTTATCAGG Avi_9859 46864 - 44651 - | copper-translocating P-type ATPase TERM 38 44828 - 44816 - G 72 -4.8 -4.67904 | opp_overlap 44816 TATGAAGGCGAAAAA CAGG TTCTG CCTG ATATTGCTCATTGTC TERM 39 45890 - 45940 + g 74 -6.8 -4.28548 | gap 2, opp_overlap 45904, overlap 45879 CGCTCGCGAGCGCTG GGCGTCCGC-A-ACCATGCGGACG ATCTG CGACAGCATGGTATCGCGGCCGAC TTTTCCTGCCTCCAT Avi_9861 47299 - 47015 - | hypothetical protein TERM 40 47518 - 47500 - H 77 -5.9 -4.59773 | overlap 47502 47509 CGGGATGGTCAAAAA CAGGAGG AATAG CCTCCGG CAAAATGGAGTGTAG TERM 41 48070 - 48086 + G 71 -10.1 -3.59979 | TGCTTCAGACTTGCA CGTCGTG CCA CGCGACG TTTCGGGTCAAGACG Avi_9862 47523 - 48107 + | cytochrome C-like protein cueR 48562 - 48119 - | Cu(I)-responsive transcriptional regulator Avi_9864 51058 - 48578 - | heavy-metal transporting P-type ATPase TERM 42 50586 - 50610 + g 79 -12.9 -3.40522 | overlap 50574 50587 TCTCGACGATCCTCG TCGTTGTCCGT GGA ACGGACAGCGG TTATCCTGCGCACCT TERM 43 50587 - 50609 + g 78 -14.2 -2.64099 | overlap 50574 50586 CTCGACGATCCTCGT CGTTGTCCGT GGA ACGGACAGCG GTTATCCTGCGCACC Avi_9865 51414 - 51211 - | hypothetical protein TERM 44 51329 - 51345 + g 75 -9.3 -3.83169 | TCTACGGTGGCGACT GCAGCCG GAT CGGCGGC TTTGATGGCTTTCTC TERM 45 51921 - 51946 + G 76 -11.9 -3.40867 | TTGGGTCGCTCATCG GTTCCTCATGC CCCC GCATGGGGAGC TTGCTTCCTCACTGG Avi_9866 51607 - 51993 + | hypothetical protein TERM 46 52010 - 52063 + F 95 -15.2 -2.66272 | opp_overlap 52011, overlap 52008 CTCACGTCCTTGAAC ACGTCGTCGATTCAGCACGGCCGC AGGTTC GCGTCCGTGCTGTAGCGATGGCGA TCCATTTGACTGAGG TERM 47 52062 - 52011 - f 93 -15 -3.02144 | opp_overlap 52010 52008 TCACGTCCTTGAACA CGTCGTCGATTCAGCACGGCCGCA GGTT CGCGTCCGTGCTGTAGCGATGGCG ATCCATTTGACTGAG Avi_9867 52116 - 52520 + | hypothetical protein TERM 48 52543 - 52576 + G 77 -13.9 -3.01712 | gap 1 GCGCATCATTGCCAC GCTCTCCCTCGCCG CGATCGT CGGCGGGGGAG-GC TATTGGGCCGGGAAG Avi_9868 52517 - 53944 + | Membrane-fusion protein TERM 49 54858 - 54840 - g 82 -10.3 -4.18494 | GACCGTTATCGAAAA CGCCAAG GAAAG CTTGGCG GCGGTACAAAACAGT Avi_9869 53941 - 57102 + | AcrB/AcrD/AcrF family protein Avi_9870 57117 - 57572 + | hypothetical protein Avi_9871 58347 - 57784 - | hypothetical protein TERM 50 58510 - 58471 - R 100 -23 -2.93991 | opp_overlap 58479 58483, overlap 58477 GCCAACCCAATGAGA CCGAAATAGAGGCGCGGC TTAC GCCGCGCCCCTATCTCAG CGGCCCGCCGTGGGT TERM 51 58504 - 58477 - R 100 -19.2 -3.74158 | opp_overlap 58479 58483, overlap 58471 CCAATGAGACCGAAA TAGAGGCGCGGC TTAC GCCGCGCCCCTA TCTCAGCGGCCCGCC TERM 52 58479 - 58502 + r 95 -15.2 -2.87132 | opp_overlap 58477 58471, overlap 58483 AATGAGACCGAAATA GAGGCGCGGC TTAC GCCGCGCCCC TATCTCAGCGGCCCG TERM 53 58515 - 58530 + r 79 -2.4 -5.28176 | overlap 58483 58516 CCCTATCTCAGCGGC CCGCCG TGGG TGTCGG TTTTTTCTCCATCGA Avi_9872 58983 - 58507 - | hypothetical protein TERM 54 59311 - 59342 + r 100 -16.6 -5.38958 | opp_overlap 59331 CTGCCATGCCGGCAG GGGGCCGCTCTG CCTCGAAA CAGGGCGGCCCC TTTTTATTTCTGGGT Avi_9873 59786 - 59346 - | hypothetical protein TERM 55 59564 - 59583 + g 73 -12.8 -2.73364 | opp_overlap 59561, overlap 59561 59576 59578 ATTCTGGATCAACGT CGCCGCCG TTCC TGGCGGCG TCATTCCGCTCGCCG TERM 56 59824 - 59844 + H 77 -6 -4.72029 | CTCCGTCTTCGCCTT CGGGCGGG CGAAC CCCCTCCG TTTTATTCCCTTGCC Avi_9874 59946 - 60419 + | polysaccharide inhibition protein TERM 57 60509 - 60483 - f 71 -10.8 -2.95223 | GAATCGTAGCAGACA CCTTCGCCGCCA AGA TCGCGGTGAAGG ACATCGAGCATAATT Avi_9875 60578 - 61432 + | hypothetical protein TERM 58 61434 - 61408 - T 85 -13.1 -3.14463 | gap 1, opp_overlap 61413, overlap 61395 AACCGTCTTGAGCAA GATCA-GCGGCG CTAG CGCCGCTTGATC CTCCCAACACATTGA TERM 59 61413 - 61428 + T 77 -11.8 -3.21099 | opp_overlap 61408 61395 TCTTGAGCAAGATCA GCGGCG CTAG CGCCGC TTGATCCTCCCAACA Avi_9878 62087 - 61815 - | hypothetical protein TERM 60 62247 - 62228 - H 70 -3.5 -4.62069 | opp_overlap 62231, overlap 62231 CGCCGAGTTGAAAAA CAAGCGG ACAATG CCGCTTT TCAAATAGCCCCCTG TERM 61 62244 - 62231 - H 70 -5.2 -4.42748 | opp_overlap 62231, overlap 62228 CGAGTTGAAAAACAA GCGG ACAATG CCGC TTTTCAAATAGCCCC Avi_9879 62304 - 62609 + | hypothetical protein TERM 62 63138 - 63121 - f 75 -7 -4.4009 | overlap 63130 63133 GGGCAGCGTAGAAAA TGGCGA AATTGA TCGCCA GCAGGACGAACAGCG Avi_9881 63491 - 63730 + | hypothetical protein TERM 63 63910 - 63893 - g 71 -12.7 -2.52896 | GCATGGCCGAAGCGA CAGGCCG CGAC CGGCCTG CGACCCCTGACATGC Avi_9882 63730 - 64164 + | hypothetical protein Avi_9884 64832 - 64503 - | hypothetical protein TERM 64 65581 - 65606 + G 87 -3.9 -5.40464 | opp_overlap 65576 TTGTTAAGCAGGTCG GGTTCCTTTGG GCAC CCAACTGGACC TTTTTGTTTATGGTC Avi_9887 64947 - 66536 + | transmembrane protein Avi_9888 66526 - 67527 + | hypothetical protein TERM 65 67619 - 67595 - T 73 -11.3 -2.75957 | overlap 67586 CATCAAGTGCAATGA GGGGAGCCCCC TTC GGCGCCTCCCC TCAAACTCCCCTTCC Avi_9890 68315 - 67980 - | hypothetical protein TERM 66 68240 - 68208 - G 95 -14.2 -3.66429 | gap 1, opp_overlap 68215, overlap 68198 68214 68215 AACAAGCCTCAATAA GGCAAAGCCGCGCCC TTCG GGGCGCGGTTTT-CC ATCGCGCTCCCGATG TERM 67 68235 - 68214 - G 87 -12.9 -3.85389 | opp_overlap 68215, overlap 68208 68215 CCTCAATAAGGCAAA GCCGCGCCC TTCG GGGCGCGGT TTTCCATCGCGCTCC TERM 68 68215 - 68234 + g 100 -16.4 -4.18494 | opp_overlap 68215 68214 68208 CTCAATAAGGCAAAG CCGCGCCC TTCG GGGCGCGG TTTTCCATCGCGCTC TERM 69 68234 - 68215 - G 87 -16.4 -2.90751 | opp_overlap 68215, overlap 68214 68208 CTCAATAAGGCAAAG CCGCGCCC TTCG GGGCGCGG TTTTCCATCGCGCTC TERM 70 68387 - 68339 - H 70 -11 -2.76696 | gap 1, opp_overlap 68339 68352, overlap 68338 68349 TCTCCGCGCAATAAT GCGCAACCGAT-CAGGTTCGCGG TGGA CCGCGATCCTGTATCCGTCCCAC TTGATATCCCATGAC TERM 71 68352 - 68373 + H 75 -11.5 -2.91383 | opp_overlap 68349 68339 68338, overlap 68339 ATGCGCAACCGATCA GGTTCGCGG TGGA CCGCGATCC TGTATCCGTCCCACT TERM 72 69196 - 69217 + H 72 -10.1 -3.32963 | GGGCAGATCGATCCG GGGAACCGG CTTG CCGGTTCAC TTCTGGAATGAGCGT TERM 73 69225 - 69251 + H 100 -5.7 -5.64274 | opp_overlap 69229, overlap 69226 69227 CGGTTCACTTCTGGA ATGAGCGTCCG AGAAG CGGACGCACGA TTTTTTTATACATAC TERM 74 69226 - 69250 + H 78 -9.2 -3.9748 | opp_overlap 69229, overlap 69225 69227 GGTTCACTTCTGGAA TGAGCGTCCG AGAAG CGGACGCACG ATTTTTTTATACATA TERM 75 69227 - 69249 + H 71 -10.5 -2.97403 | opp_overlap 69229, overlap 69226 69225 GTTCACTTCTGGAAT GAGCGTCCG AGAAG CGGACGCAC GATTTTTTTATACAT TERM 76 69247 - 69229 - H 73 -11.7 -2.71364 | opp_overlap 69227 69226 69225 TCACTTCTGGAATGA GCGTCCG AGAAG CGGACGC ACGATTTTTTTATAC TERM 77 69410 - 69432 + H 72 -10.4 -3.33815 | GCTCCACCCCCTGAC GGGAGCGGGC TGC GCCCTCCCCC TTCGTTCCGCCGGAT TERM 78 70304 - 70314 + G 76 -4.6 -4.82901 | overlap 70296 AGAAGCTGGCAGCGG TGGC CGA GCCG TTTTTGTCGCAAGGC Avi_9896 69538 - 71475 + | transcriptional regulator Avi_9897 71979 - 71437 - | hypothetical protein TERM 79 71742 - 71774 + g 100 -17.8 -3.6471 | overlap 71737 GGTTGTCACCCGCGC CGCCCGTCTTTGGT CCGAT ACCAGAGGCGGGCG TTCTGTCATTTGCAA TERM 80 72220 - 72187 - R 76 -3.7 -4.94487 | gap 1, opp_overlap 72187 72192, overlap 72192 CCAGAAAAGAGAAAA CTGAACCG-CCCCGGC TTT GCCGGAGACCGTTTGG TTTAAGTTATGCGGC tnp 73132 - 72227 - | transposase Avi_9899 73458 - 73129 - | hypothetical protein TERM 81 73536 - 73511 - H 100 -14.7 -3.53012 | overlap 73496 73495 CCGGGGCGGTTCAAA CCGCTCCCGAG AAAA CCCGGAAGCGG TCTGCAAAAAACCAA TERM 82 73625 - 73606 - H 87 -4.3 -5.29445 | gap 1 TGTCAATAAGAAAAA CGCC-TTC TCGGT GAACGGCG AAGCCTTGTCTGGTC TERM 83 73678 - 73664 - g 80 -10 -4.04719 | AGGAGACAGGACAAA TGAGGG AAA CCCTCA CGAACAAGCGGCTAA TERM 84 73758 - 73720 - g 73 -12.4 -3.08869 | ATGACAAAGGAGAGA GCCGAGTTCCGGCGACTG GCA CAGTCAACGGAAGTCGGA ACGGTGACGCGCGGC TERM 85 73889 - 73859 - g 88 -16.1 -3.04461 | opp_overlap 73887 CAGTGATCGTCAACA CCGCCCGGGCCGA CGCCT TCGACACGGGCGG GCGACCCATTGTATT repC 73663 - 74943 + | replication protein C exoI 74940 - 75446 + | succinoglycan biosynthesis protein TERM 86 75764 - 75792 + F 77 -12.3 -2.7814 | overlap 75763 75786 75787 CCTTCCAGCCTCCTC CGCTGCGCTTCGG CCT CCGGTGCGCACCG CTTTCCGCTGTGCCT Avi_9904 75848 - 76183 + | hypothetical protein TERM 87 76214 - 76196 - f 82 -11.7 -3.48924 | TGATTGCGCAGAGAA GCCCGGT TCATG ACCGGGC ATCTCACCCCGAAAA TERM 88 76224 - 76271 + F 70 -10.2 -3.14878 | gap 2, opp_overlap 76230, overlap 76222 76229 76230 CCGGGCATCTCACCC CGAAAAG-GCTGAAAATCC-GC CAAATA GCTGGATTTTTGGCCCTTTTCG TGTTAGGTTCAACAG TERM 89 76229 - 76265 + F 70 -4.5 -4.44284 | gap 1, opp_overlap 76230, overlap 76224 76222 76230 CATCTCACCCCGAAA AGGCTGAAAATCC-GC CAAATA GCTGGATTTTTGGCCC TTTTCGTGTTAGGTT Avi_9906 76304 - 76510 + | hypothetical protein TERM 90 76541 - 76562 + F 100 -15.9 -5.24551 | CTCAAGAGGCTCAAG GCCGTCTGC TCGC GCAGACGGC TTTTTGTTGGTTTAC Avi_9907 76580 - 77644 + | cell filamentation protein ardC 77873 - 78730 + | antirestriction protein SEQUENCE gi|222106127|ref|NC_011988.1| Agrobacterium vitis S4 chromosome 2, complete genome (length 1283187) repA 287 - 1549 + | replication protein A TERM 1 1591 - 1560 - g 77 -2.3 -5.07053 | gap 1, opp_overlap 1568, overlap 1568 AATGATTGGAAAAAA CCGAAAA-AGCGAG TTGCG CGCGCTGTTTTCCG ATCCAGGATCGGGGG TERM 2 1580 - 1568 - g 80 -4.7 -4.95854 | opp_overlap 1568, overlap 1560 GAAAAAACCGAAAAA GCGAG TTG CGCGC GCTGTTTTCCGATCC TERM 3 2224 - 2213 - g 83 -5.8 -5.00616 | TTTCGGTGCAAAAAA GCGA GTTG TCGC GGCTTATTCAGGTCG TERM 4 2589 - 2604 + G 76 -11.8 -3.34398 | overlap 2587 CGAAACGCGTCTGGC GGCGGC TTAT GCCGCC TATTTGGACGGCGAA repB 1546 - 2628 + | replication protein B TERM 5 2638 - 2659 + F 88 -12.3 -3.58536 | GACTAGAATGGGTTT GCATCCGGC TTTT GCTGGATGC TTTAGACCTGCATTT TERM 6 2852 - 2824 - f 100 -4.6 -5.60689 | gap 1, opp_overlap 2847 CGAGACAAGAAAAAA GGC-CCCAAAACG TCAC CATTTCGGAAGCC CTCTTCTATGTAGCA TERM 7 3830 - 3840 + G 71 -8.2 -4.04188 | GCGCGAGCTGGATGG CCGG GAA CCGG TTATTGTCTTTCCGT TERM 8 4436 - 4426 - g 70 -4.6 -4.51097 | opp_overlap 4426, overlap 4428 GCAATGATCATAAAA CAGC GGA GCCG GTTTCACCTCCTCTC repC 3579 - 4796 + | replication protein C Avi_5003 5079 - 6632 + | phospholipase/phosphatidylserine synthase TERM 9 6658 - 6685 + T 100 -15.8 -4.96848 | overlap 6644 6653 TGAGCCCCACCGAGA GCTCTTGTGATT GGTA AATCACAAGAGC TTTTTCTATGGCGAG Avi_5004 7689 - 6736 - | hypothetical protein Avi_5005 7754 - 8491 + | hypothetical protein TERM 10 8572 - 8608 + T 70 -7.3 -4.08216 | opp_overlap 8578, overlap 8573 TGGGTGGGTTCATCT GTGAAATGCGAAGGG ATATCCA CCCCTCGCATTTCGA TTTTCCCACGGATGA TERM 11 8573 - 8607 + T 72 -10.8 -3.04715 | opp_overlap 8578, overlap 8572 GGGTGGGTTCATCTG TGAAATGCGAAGGG ATATCCA CCCCTCGCATTTCG ATTTTCCCACGGATG TERM 12 8602 - 8578 - T 71 -9.3 -3.55444 | opp_overlap 8573 8572 GGTTCATCTGTGAAA TGCGAAGGG ATATCCA CCCCTCGCA TTTCGATTTTCCCAC Avi_5006 9459 - 8635 - | hypothetical protein TERM 13 9295 - 9305 + g 77 -2.4 -5.03314 | GGGTCTGGCGATGAT CCAG GCG CGGG TTTTTTCCCAATGCG Avi_5007 9913 - 10218 + | hypothetical protein TERM 14 11073 - 11101 + G 74 -12.5 -3.01712 | opp_overlap 11065 GGCAATACCGCTCCA GCGCTGGCAATCA TCT TGATTGCTATCGC TCTTGCGGAACGCGA exoD 10581 - 11219 + | exoD protein Avi_5010 11717 - 11250 - | transcriptional regulator AsnC family nocP1 11880 - 12659 + | ABC transporter nucleotide binding/ATPase protein TERM 15 13173 - 13144 - g 80 -5.1 -4.98436 | gap 1, overlap 13138 13147 13148 CGAATATTACAAAAA GTATTTTGCCAAGG TGG CCTCGG-AAAAGAC CTATCAAACGCTGGA Avi_5014 12704 - 13474 + | ABC transporter substrate binding protein (amino acid) Avi_5015 13491 - 14213 + | ABC transporter membrane spanning protein Avi_5016 14222 - 14911 + | ABC transporter membrane spanning protein TERM 16 15401 - 15391 - g 83 -8.2 -4.58283 | opp_overlap 15391 15393, overlap 15392 15393 GAAGCCGTTCAAAAA GCGG TTG CCGC AACAGGCAAGCCCTT Avi_5017 14929 - 15834 + | S-methyltransferase Avi_5018 16827 - 15844 - | ABC transporter membrane spanning protein (iron (III)) TERM 17 16835 - 16797 - G 78 -11 -3.67296 | overlap 16833 CAGCACCCAGCGAAA TGCCGGCACTGACGACGA CGA TAATCGTCAGAACCAGCA GGATCGGCACAGATA Avi_5019 17832 - 16873 - | ABC transporter substrate binding protein (iron) Avi_5021 19009 - 17855 - | ABC transporter nucleotide binding/ATPase protein (iron) TERM 18 17897 - 17880 - G 70 -2.6 -4.86621 | overlap 17882 AGCGCGAAGGAAAAA TTGCGG GTGGCG CCGCCA TCCAGGCTGTGGACA TERM 19 18397 - 18425 + g 71 -13.2 -2.57564 | gap 1, overlap 18396 CCTGGACTACGACGG CGATCCGGCGGGC GACC GTCCG-CGGATCG ATTGTCCACACATCC TERM 20 19144 - 19099 - R 95 -12.8 -4.0098 | gap 1 GGTCAAGCTAAAGAA TGTGGATTTGTTCGG-TTGGC TTGGT GCCAAGCCGAACAAATCCGGA CCAAGCTTTACGGTT Avi_5022 20637 - 19201 - | amidohydrolase TERM 21 20311 - 20335 + g 81 -12.2 -3.65812 | gap 1 GTGGCCGCAGCCATG GCCG-TTGCCG CCTG CGGCAATCGGC TTATGTTCAGCGACG TERM 22 20701 - 20671 - R 95 -15.6 -2.72227 | opp_overlap 20676, overlap 20661 20676 AACACCCGCCAACCA TAAAAGCTTGGCGC TCA GCGGCAAGCTTTTA TCCGCTGTTTTACCA TERM 23 20696 - 20676 - R 95 -11.1 -4.5442 | opp_overlap 20676, overlap 20661 20671 CCGCCAACCATAAAA GCTTGGCGC TCA GCGGCAAGC TTTTATCCGCTGTTT TERM 24 20676 - 20696 + r 93 -11.1 -4.43221 | opp_overlap 20661 20676 20671 CCGCCAACCATAAAA GCTTGGCGC TCA GCGGCAAGC TTTTATCCGCTGTTT TERM 25 20759 - 20783 + r 90 -12.9 -3.54436 | AGTCATCCGGAAGGC CTGCTCTTCTG CTT CAGGAGAGCGG TTCTGTGCGTGTGTC Avi_5023 21050 - 20772 - | hypothetical protein glgA 22552 - 21047 - | glycogen synthase Avi_5025 22941 - 22624 - | hypothetical protein TERM 26 22765 - 22801 + g 85 -11.4 -4.09739 | gap 1 AGTTTGCGTTTTGGC GGCC-TGGCTCGCGCGC TTGA GCGCGCCTGCCTTGGCC TTTTGCGCAGATTGC Avi_5027 23186 - 23527 + | hypothetical protein TERM 27 23578 - 23555 - T 77 -8.2 -4.07568 | GGCGGTTGGCCAAAA GTTGACAGGT TGAC ATCTGTCAAC GCCGACTGAGGGGCC Avi_5028 24220 - 23627 - | hypothetical protein TERM 28 24255 - 24275 + H 71 -2.5 -4.99435 | CCTCATGAGACTCCT GTCCGGG TGATGGT TCTGGAC TTTTTGCTTGTTGCG TERM 29 24859 - 24882 + G 76 -4.4 -4.72272 | overlap 24865 ACCTTCGTGATCTTT CCTTTGCTCG GCCT CGGGCTGGGG TTTTTCGTGCAGGGC TERM 30 25469 - 25439 - g 93 -11.1 -4.63218 | gap 1, opp_overlap 25439 25438, overlap 25441 GCGGCTCGAAGAAAA GC-CTGGCCTCCGG CGTG CCGATGGCCAGCGC GATTTTTGCCGGGCA TERM 31 25466 - 25441 - g 71 -12.5 -2.62244 | opp_overlap 25439 25438, overlap 25439 GGCTCGAAGAAAAGC CTGGCCTCCGG CGTG CCGATGGCCAG CGCGATTTTTGCCGG Avi_5029 24625 - 25617 + | hypothetical protein TERM 32 25658 - 25633 - T 89 -13.3 -3.35813 | CGCCATTCTAATCAA GGCGAGGATGC TCGT GAATCCTCGCC TTGAAAGCACATTCA Avi_5030 26702 - 25671 - | zinc-binding dehydrogenase Avi_5031 27660 - 26713 - | 2-hydroxyacid dehydrogenase TERM 33 27908 - 27944 + G 71 -12.9 -2.68532 | opp_overlap 27906, overlap 27901 GCGATGAAGCTAAGC TTGCCGCCGCCGCCG CCCGGAT CGGCGACGGCTGCGA TAGTCTGGCTTTCGA idnO 27769 - 28527 + | gluconate 5-dehydrogenase TERM 34 28751 - 28730 - g 73 -12.3 -3.01924 | opp_overlap 28725 28724 GATGCGGTCGGAACA CGCCTTGCC GGGG GACAAGGCG TGACCATTATCGGGT gntK 28529 - 29032 + | gluconokinase garR 29035 - 29919 + | 2-hydroxy-3-oxopropionate reductase Avi_5036 29919 - 30251 + | hypothetical protein TERM 35 30270 - 30290 + F 73 -9.6 -3.57144 | GGCGCTCGTCGGGTC CCCTCCCC TGTTT GGGGTGGG TTTGCCGATGGGAAA Avi_5038 30378 - 31391 + | transcriptional regulator LacI family TERM 36 31424 - 31399 - T 100 -16.2 -3.69354 | opp_overlap 31396 31395 GTCTATAATGGTAAA GCCATGCGCC GGTGAA GGCGCATGGC AGGGTTATCAGCTCA Avi_5039 32531 - 31437 - | ABC-type sugar transport system, periplasmic component Avi_5041 33628 - 32570 - | ABC transporter membrane spanning protein (sugar) Avi_5042 35141 - 33645 - | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 37 33755 - 33738 - G 77 -7.7 -4.36914 | opp_overlap 33744, overlap 33740 TTGGCCGCGAGAAAA TACCAGC GCCC GCTGGCA GATATGGGCGATTTC TERM 38 35755 - 35766 + H 71 -2.2 -4.91109 | overlap 35747 CGTTTGGGGTCGAAC TCAG CGAC CTGG TTTTTATCATAGCGG TERM 39 36211 - 36269 + H 100 -18.5 -3.09058 | gap 1, overlap 36202 36212 36214 AAGGAGGCGTTTCTT GCGCTGTTGACAGCTGTCAACGTCAG AAAATGCG TTG-CGTTGACAGCTGTCAACAGTGA CTTTCTGTCTGCTGT TERM 40 36212 - 36270 + H 85 -10 -4.16301 | gap 3, overlap 36202 36211 36214 AGGAGGCGTTTCTTG --CGCTGTTGACAGCTGTCAACGTCAG AAAATGCG TTG-CGTTGACAGCTGTCAACAGTGAC TTTCTGTCTGCTGTA TERM 41 36214 - 36266 + H 100 -21 -2.74987 | gap 1, overlap 36211 36212 GAGGCGTTTCTTGCG CTGTTGACAGCTGTCAACGTCAG AAAATGCG TTG-CGTTGACAGCTGTCAACAG TGACTTTCTGTCTGC Avi_5044 36674 - 37006 + | hypothetical protein TERM 42 37130 - 37098 - f 70 -10 -3.19522 | gap 1, opp_overlap 37103, overlap 37118 TGATTCAAGATGCAA CAGGATGATGCGTGT GAAA AC-CGCATCATGCTG TAAGCGCATTCGGTC TERM 43 37783 - 37751 - f 88 -10.5 -4.07687 | opp_overlap 37750 37749 ATTGCCCTGGCAAAA GCTTGTTCTGCCGCT CGC AGCGGCAGGTGAAGC ACTTGTGCGTCTGGA Avi_5045 37788 - 38825 + | hypothetical protein TERM 44 38843 - 38861 + F 75 -11.8 -2.83894 | opp_overlap 38840 38843 38845, overlap 38845 GTGCAGTGGAAAGCA TATGCTGC AAT GCAGCATA TATAATACTACTAAT TERM 45 38861 - 38843 - f 75 -11.8 -2.92613 | opp_overlap 38843 38845, overlap 38840 38845 GTGCAGTGGAAAGCA TATGCTGC AAT GCAGCATA TATAATACTACTAAT TERM 46 38920 - 38935 + F 91 -5.4 -5.40072 | opp_overlap 38920 ATGAATTTAAGCAGA CGTCAT GGAG GTGACG TTTTTTTGGGAGGAC Avi_5046 38955 - 39917 + | ABC transporter substrate binding protein (ribose) TERM 47 39963 - 39931 - f 72 -11.2 -3.03038 | gap 1, opp_overlap 39926 39925 39956, overlap 39926 GATATCCAAACCAGA CCGCGTCCGGTTGCA GATA TGCG-CCGGGCGCGG ATTGCCCTTTTATCG Avi_5049 40001 - 41539 + | ABC transporter nucleotide binding/ATPase protein (ribose) Avi_5050 41536 - 42576 + | ABC transporter membrane spanning protein (ribose) Avi_5051 42573 - 43553 + | ABC transporter membrane spanning protein (ribose) Avi_5052 43550 - 44278 + | transcriptional regulator TERM 48 44302 - 44333 + T 100 -16.1 -3.50853 | opp_overlap 44323 CTCCAAGGCGGGTGT GATGGCATGCATT TTTGAC AATGCATGCCATC TTGTCATTCAACCCA vdh 45802 - 44354 - | vanillin: NAD oxidoreductase vdh 47408 - 45882 - | vanillin: NAD oxidoreductase TERM 49 46523 - 46503 - G 78 -6.7 -4.66163 | ACCCTGATTGAAAAA CGCCCCGAA GGT TGCGGCGCG GGCGGCCTGTTCGAG TERM 50 47154 - 47134 - G 71 -11.1 -3.21276 | overlap 47132 GCTTGTTCCAGAATA GTCTTGCGC ATG GCGCAAGGC GATGCTGACCAGCCA TERM 51 47467 - 47483 + H 90 -7.9 -4.88388 | opp_overlap 47467, overlap 47469 ACCATTGATCCGAAA CCGCCTG TTT CAGGCTG TTTTTCTGGAATTCT TERM 52 47469 - 47481 + H 81 -9.1 -4.05669 | opp_overlap 47467, overlap 47467 CATTGATCCGAAACC GCCTG TTT CAGGC TGTTTTTCTGGAATT Avi_5055 47628 - 48527 + | transcriptional regulator AraC family TERM 53 48599 - 48573 - T 76 -12.5 -2.62983 | opp_overlap 48564 48562 48560 TGCATCTGGAGAGCA TTTCAGCGTTT AACGG AAACGCTGAAA TGCGACACATGATAT Avi_5056 49390 - 48665 - | hypothetical protein ilvD 51144 - 49408 - | dihydroxy-acid dehydratase TERM 54 49824 - 49801 - G 72 -9.4 -3.76224 | GCCCCATTCAGGAAA GCCCGGCCCC CCCA GCGGCCCGGC ATTGCGCAACACCAG Avi_5058 52057 - 51188 - | ABC transporter permease protein TERM 55 51383 - 51364 - G 75 -10 -3.72576 | overlap 51365 CCTGTCCCGAGGAAA CGCCGAAC ACCA GTTCGGCA GCAATCAGCGTGCGC TERM 56 51756 - 51724 - G 70 -12 -2.73364 | TGTTGATGGCAAGCA CTGTCAGCAGCGCG GCAAG CACGGTGCCGACAG TATAGCCCATGAACA ssuB 52877 - 52062 - | ABC transporter nucleotide binding/ATPase protein (nitrate/sulfonates) TERM 57 52482 - 52504 + g 71 -7.6 -4.07568 | opp_overlap 52472 ATAATGGCGGGCCAG TGCCTCGGCT TCG GGCCTGGGCA TTTTACGGGCGACGA TERM 58 53055 - 53029 - R 93 -12.3 -3.9377 | opp_overlap 53041, overlap 53030 ACAAGCCTAAGGAAA GTGCAGCGGCA GGCGA TGCCGCTGCAT GGCGCGGCGCGGCTC TERM 59 53054 - 53030 - R 95 -15.8 -2.95539 | opp_overlap 53041, overlap 53029 CAAGCCTAAGGAAAG TGCAGCGGCA GGCGA TGCCGCTGCA TGGCGCGGCGCGGCT Avi_5060 54052 - 53069 - | ABC transporter substrate-binding protein Avi_5061 54302 - 55006 + | transcriptional regulator GntR family TERM 60 55123 - 55177 + F 100 -23.9 -3.727 | gap 1, opp_overlap 55156 55160, overlap 55119 GAAAATACCCTCGTC GCCTCTACAGCGTCGCTTGTGCGTTT TATA AAACGCACAAGCGACGCTGGA-ACGC TTTCAATCTCCTGCA TERM 61 55975 - 56006 + G 81 -13 -3.60098 | gap 1, opp_overlap 55975, overlap 55978 AATCCAGTGGGAAGA GGGGGGCG-TTCCCC ATC GGGGAATCGCCCTGC TTTCCCGTGACCAGT TERM 62 55978 - 56003 + G 84 -15.5 -2.92613 | gap 1, opp_overlap 55975, overlap 55975 CCAGTGGGAAGAGGG GGGCG-TTCCCC ATC GGGGAATCGCCC TGCTTTCCCGTGACC Avi_5062 55427 - 56710 + | possible oxidoreductase Avi_5063 56881 - 57480 + | NAD(P)H-flavin oxidoreductase TERM 63 57503 - 57551 + F 77 -3.2 -5.03314 | gap 2, opp_overlap 57509, overlap 57509 GCCTCTCTGTCGAGT GACATATGCGCAGCAG--CACCAA GCA TTGGTGAGCTGCTGCGCATTTAAA TTTTTTACCAATCCA TERM 64 57509 - 57545 + F 100 -15.4 -4.05875 | gap 2, opp_overlap 57509, overlap 57503 CTGTCGAGTGACATA TGCGCAGCAG--CACCAA GCA TTGGTGAGCTGCTGCGCA TTTAAATTTTTTACC TERM 65 57545 - 57509 - f 95 -15.4 -2.91264 | gap 2, opp_overlap 57509 57503 CTGTCGAGTGACATA TGCGCAGCAG--CACCAA GCA TTGGTGAGCTGCTGCGCA TTTAAATTTTTTACC Avi_5064 57596 - 57991 + | hypothetical protein TERM 66 58051 - 58096 + F 100 -14.9 -3.727 | overlap 58049 58052 TTTCTCACTGGGGGC ACGTTACATCGTCGTGCGTTT TGTA AAACGTACGGCGATGTAACAC TTTAAATCTGCTACA TERM 67 58052 - 58095 + F 100 -18.4 -2.83299 | overlap 58049 58051 TTCTCACTGGGGGCA CGTTACATCGTCGTGCGTTT TGTA AAACGTACGGCGATGTAACA CTTTAAATCTGCTAC TERM 68 59026 - 59011 - g 74 -2.5 -5.0133 | overlap 59012 59013 CAGCTTGCCAAAAAA CGGCA TCTGGC TGCCA AGCTGCTGATCGAGC cfa 58678 - 59781 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 69 61000 - 61016 + G 80 -4.4 -4.90778 | gap 1, overlap 61003 CGGTGTCCTGGTCGG CGTGCTG TTGT CAGC-CG TTTTCTTTGCCTGGA Avi_5067 59876 - 61366 + | sulfate permease uspA 61378 - 62232 + | Universal stress protein Avi_5070 62339 - 63541 + | Major facilitator superfamily permease protein Avi_5072 65487 - 63703 - | hypothetical protein Avi_5073 66572 - 65889 - | transcriptional regulator TetR family Avi_5074 66801 - 68207 + | oxidoreductase TERM 70 68386 - 68343 - g 78 -3.7 -5.00884 | opp_overlap 68326 AGTTGCTGCAAAAAA GCGCCTTCTTGTCGATTTC CAGGTC GACCTCGCCAAGATGGTGC GTGCCAATGCGGTTG Avi_5075 68212 - 68739 + | hypothetical protein TERM 71 68808 - 68836 + F 70 -9.7 -3.15503 | gap 1, opp_overlap 68808 68811, overlap 68806 68811 TTGTCTTTTAGAGAA GACGGTTGCCAG TTTCCC CTGGCAACC-TC TGTTGAGTGTTGAGC TERM 72 68836 - 68808 - f 74 -9.7 -3.48276 | gap 1, opp_overlap 68808 68806 68811, overlap 68811 TTGTCTTTTAGAGAA GACGGTTGCCAG TTTCCC CTGGCAACC-TC TGTTGAGTGTTGAGC TERM 73 68811 - 68834 + F 81 -12.5 -3.136 | opp_overlap 68808 68811, overlap 68808 68806 TCTTTTAGAGAAGAC GGTTGCCAG TTTCCC CTGGCAACC TCTGTTGAGTGTTGA TERM 74 68834 - 68811 - f 76 -12.5 -2.58822 | opp_overlap 68811 68808 68806, overlap 68808 TCTTTTAGAGAAGAC GGTTGCCAG TTTCCC CTGGCAACC TCTGTTGAGTGTTGA Avi_5076 69066 - 70604 + | major facilitator superfamily permease protein Avi_5077 70629 - 71237 + | nitrilotriacetate monooxygenase TERM 75 71593 - 71610 + G 78 -9.1 -4.11692 | AGGCCGTGCGGATCG TCGCTCC AGGG GGGGCGA TTTTCGAGGTGCATA Avi_5079 71280 - 72179 + | oxidoreductase TERM 76 72413 - 72389 - f 86 -12.8 -3.53224 | CAGCTTTTGGGTAAA CCCTTCCCCG CTATT CGGGGAGGGG TGGCGGATCGACCAG TERM 77 73042 - 73052 + G 71 -6.8 -4.14739 | TTGCTGTTTGCGACG GCTG CTC CAGC TTTTGCCATCGATCC TERM 78 74233 - 74246 + G 74 -2.3 -4.87665 | ATCGTTAATCCGAAC TCTGC TTTC GCTGA TTTTTCTACCTCAAG Avi_5080 72997 - 74346 + | Carbohydrate-selective porin Avi_5081 74593 - 75489 + | hypothetical protein TERM 79 75650 - 75669 + G 74 -6.4 -4.4767 | TTGAGACCGGCTTTG GAAGCGCT TGAT AGCCCTTC TTTTGTGCTGGCTGA Avi_5082 75500 - 76354 + | 2-hydroxyhepta-24-diene-1 Avi_5084 76833 - 77324 + | CMP/dCMP deaminase zinc-binding Avi_5085 78086 - 77346 - | transcriptional regulator GntR family TERM 80 78299 - 78331 + H 88 -2.6 -5.49568 | overlap 78289 CGGTTCCGCCTTTTT GCCGGTTTGCTC GGTCCGTTG GGGCAATGCGGC TTTTTGTTTTGAGTT TERM 81 79122 - 79097 - g 71 -10.5 -3.5594 | gap 1, opp_overlap 79089 79097 79098, overlap 79084 79098 AACCGATGCCGCAAA CGGCTTTG-GCG GTG CGCGCAAAGCCA TTCTGGATGAAATCC TERM 82 79121 - 79098 - g 70 -11.8 -2.73243 | gap 1, opp_overlap 79089 79097 79098, overlap 79084 79097 ACCGATGCCGCAAAC GGCTTTG-GCG GTG CGCGCAAAGCC ATTCTGGATGAAATC Avi_5086 78435 - 79988 + | ABC transporter substrate binding protein (dipeptide) TERM 83 80222 - 80272 + G 85 -11.1 -4.07568 | gap 1, opp_overlap 80211 80213 AAGACATCGCGCTGA TGCGCGGGCTTGGGGT-GAAGGCC TATC GGCTTTCCACCGCATGGCCACGCA TTTTCCCAAGCGGCA bgl 79990 - 81351 + | beta-glucosidase TERM 84 81633 - 81669 + G 76 -5 -4.72986 | gap 1 CTTTCTCGATATGCC GGTGGGTGCTGCCCTGT TGCA AC-GGGCCGAGCCAACC TTTTTCCTCACGCTA Avi_5088 81376 - 82317 + | ABC transporter membrane spanning protein (dipeptide) TERM 85 82522 - 82512 - g 78 -8.2 -4.43189 | opp_overlap 82514 ATGAACCGGATAAAA CCGC CGA GCGG AACCTATTGGTTTGG Avi_5089 82317 - 83198 + | ABC transporter membrane spanning protein (dipeptide) TERM 86 83954 - 83929 - g 76 -11.9 -3.33315 | gap 1 CGAAGACCTTTATAA CCTCGCCGAGCG CTG CGCT-GGCGAAG GAATCCGGCTGGATA TERM 87 84026 - 84037 + G 71 -7.2 -4.2349 | opp_overlap 84002, overlap 84014 84004 GCGGCCATCAAACGG GGGC TTTT GCCC TTTTCGATCTCCACC Avi_5090 83201 - 84412 + | hypothetical protein Avi_5091 84452 - 84943 + | hypothetical protein Avi_5093 85782 - 84955 - | transcriptional regulator selA 85879 - 87075 + | L-seryl-tRNA(ser) selenium transferase TERM 88 87166 - 87210 + F 82 -11.5 -3.44308 | overlap 87164 87167 TTTTATGCGATCACT CTTTCGAGTCTGTCAGGTTAA GGT TGAACCAGACAGACTCGAGGC TCTCTTGTTTTCGTT TERM 89 87167 - 87209 + F 90 -15 -2.64958 | overlap 87166 87164 TTTATGCGATCACTC TTTCGAGTCTGTCAGGTTAA GGT TGAACCAGACAGACTCGAGG CTCTCTTGTTTTCGT TERM 90 87673 - 87683 + G 71 -6.8 -4.25104 | overlap 87682 CTTGCCGTTTCGCTT CACC GAC GGTG TTTTCCTGGACACCC Avi_5096 87500 - 89038 + | GGDEF family protein TERM 91 89895 - 89909 + G 72 -8.5 -3.90588 | opp_overlap 89881, overlap 89876 89905 AGCGGCCCGGTCGCT CGGGC TCGCT GCCCG TTTCGTTACGGGCTA Avi_5097 89305 - 90198 + | hypothetical protein TERM 92 90636 - 90662 + G 83 -4.4 -5.07652 | overlap 90625 TATTGCGATACGGAC CGCCTTTCAG ATTTCGC CTGGAAGACG TTTTCTTTTACCCCC Avi_5101 90294 - 91097 + | Transglutaminase domain-containing protein Avi_5102 91405 - 92076 + | Permeases of the major facilitator superfamily Avi_5103 92361 - 92999 + | oxidoreductase with iron-sulfur subunit Avi_5106 92996 - 93946 + | oxidoreductase Avi_5107 93950 - 96148 + | dehydrogenase TERM 93 96290 - 96329 + F 81 -9.4 -4.06055 | overlap 96294 CGCTCACCGCAACTT GTTATGAGAAGGGTCATT GAAA AATGGCTCTTCTCATCCC TTTACTTTAGAGCCT TERM 94 96294 - 96325 + F 81 -13.2 -2.73676 | overlap 96290 CACCGCAACTTGTTA TGAGAAGGGTCATT GAAA AATGGCTCTTCTCA TCCCTTTACTTTAGA Avi_5108 96470 - 98164 + | two-component sensor TERM 95 99020 - 99010 - g 71 -6.8 -4.1964 | CGGAACATTTGAAAA CAGG GCG CCTG GTTCACGTCTTGCGA Avi_5109 98265 - 99164 + | transcriptional regulator LysR family Avi_5111 99906 - 99220 - | hypothetical protein TERM 96 99999 - 100034 + r 77 -10.2 -3.65199 | opp_overlap 100000 100004, overlap 100000 100005 ATCGACAACAAGAGA AGCGAGGCCGCGGCGG CTTT TCACCGCGGCCATGCC TTTGGATCAGGACTT TERM 97 100033 - 100000 - R 100 -13 -3.87364 | opp_overlap 99999 100000 100005, overlap 100004 TCGACAACAAGAGAA GCGAGGCCGCGGCG GCTTTT CACCGCGGCCATGC CTTTGGATCAGGACT TERM 98 100000 - 100033 + r 85 -13.7 -2.78798 | opp_overlap 100000 100004, overlap 99999 100005 TCGACAACAAGAGAA GCGAGGCCGCGGCGG CTTT TCACCGCGGCCATGC CTTTGGATCAGGACT TERM 99 100029 - 100004 - R 95 -15.4 -2.68784 | opp_overlap 100000 99999 100005, overlap 100000 CAACAAGAGAAGCGA GGCCGCGGCG GCTTTT CACCGCGGCC ATGCCTTTGGATCAG TERM 100 100005 - 100015 + r 77 -8.2 -4.07568 | opp_overlap 100004 100000, overlap 100000 99999 AACAAGAGAAGCGAG GCCG CGG CGGC TTTTCACCGCGGCCA Avi_5112 101228 - 100041 - | non-heme haloperoxidase TERM 101 101208 - 101180 - G 71 -11 -3.28712 | gap 1, opp_overlap 101170 101175 GGGTCTCGGCGACAA CCGCG-TCGCGAT GATT AACGCGAACGCGG CGACTTTTCCGGTTG fabG 101853 - 101290 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 102 101488 - 101506 + g 71 -8.1 -3.9712 | GTTTGGATCGCTCGC GATGGCG AGCTG CGCCGTC TTTGTCATGCCGTAA TERM 103 102741 - 102706 - g 73 -11.9 -3.13403 | opp_overlap 102717, overlap 102704 TCTTGGTGATCAAGA GCTTGAGATCACGGC TATCTC GCCGTGATCTGACGC GAGCGCAAAACGATG greB 102248 - 102733 + | transcription elongation factor TERM 104 102764 - 102752 - T 74 -7.7 -4.14243 | opp_overlap 102752 GACGCGAGCGCAAAA CGATG TGT CATCG TTTGCCCGTATCAGC TERM 105 102841 - 102869 + T 100 -16.9 -3.47227 | overlap 102842 TGGTTTTCCCTCGAG TCTGTCAGGTTCA ATC TGAACCTGACAGG TTGTCGTCATTACGC TERM 106 102842 - 102868 + T 100 -18.2 -2.68015 | overlap 102841 GGTTTTCCCTCGAGT CTGTCAGGTTCA ATC TGAACCTGACAG GTTGTCGTCATTACG melA 104240 - 102879 - | alpha-galactosidase TERM 107 104302 - 104285 - R 73 -9.1 -3.57144 | opp_overlap 104299 GTGGCGACGTTGAAA GCAGCTC TGAC GAGCCGC TGGGTGTAGGCGGTT Avi_5116 105933 - 104266 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5117 107067 - 105946 - | ABC transporter membrane spanning protein (oligopeptide) TERM 108 106725 - 106714 - G 70 -2.2 -4.7254 | overlap 106701 106700 ACCCTTGACGAAAAA GCCA AGGT TGAC GGGGTTTTCAAAGTC Avi_5118 108077 - 107064 - | ABC transporter membrane spanning protein (oligopeptide ) TERM 109 107632 - 107616 - G 70 -2.1 -4.72986 | CAGCGCCATCAAAAA GCGTGGC ACG GTCATGC CGAGAAACGAGATGC TERM 110 107833 - 107821 - G 71 -7.7 -4.07687 | AGGCTGTGGCCAAAA TCACC ACG GGTGA CAATGCCTGTGATCC TERM 111 108174 - 108193 + r 72 -5.7 -4.57569 | overlap 108171 GAGGTTTGTTTTCGC CCGGCTT GCCGGG AAGCTGG TTTTTGAACAGCTCA agpA 110238 - 108151 - | ABC transporter substrate binding protein (alpha-galactoside) TERM 112 110303 - 110340 + r 75 -11.3 -3.05993 | overlap 110305 CGCTCCCTCGCGGGT CATGTCATCCGGCCCCT CCTC AGAAACCGGATGACATG TCTATGTCTGGATCA melA 111825 - 110353 - | alpha-galactosidase TERM 113 110462 - 110472 + g 71 -8.2 -4.0098 | GTCTTGACGGTACCT CGGC TCA GCCG TTCTTTGGCTTCAGG TERM 114 112648 - 112665 + G 75 -5.5 -4.59511 | ACTGGCGGCAGTGTC TGGTCTC AGCC GAGCCCA TTTTTCACGGGTCTT agpT 112016 - 112960 + | transcriptional regulator AraC family Avi_5123 113461 - 113066 - | hypothetical protein Avi_5124 114028 - 113531 - | hypothetical protein phoP 114274 - 114942 + | two component response regulator TERM 115 115367 - 115349 - g 77 -2.4 -5.1101 | TGACCATGGAAAAAA GCTCTA TTTGCGT CAGAGC ACCCGTGATGTCGGT phoQ 114939 - 116309 + | two component sensor kinase TERM 116 116491 - 116479 - g 75 -5.5 -4.70659 | GTCGACACGTAAAAA GCCTG CTC CAGAC CGTGGATCGACAGGT TERM 117 117002 - 116959 - g 75 -8.9 -3.96216 | gap 1 TCCGGATGCAAATAA CGGCGATCGAAACTCCGAGG ATAAG CTTCAG-GCTTCGATCGACG CCCATAAAATCCTCA Avi_5127 116429 - 117037 + | molecular chaperone DnaJ family Avi_5128 118117 - 117104 - | zinc-binding dehydrogenase Avi_5129 119460 - 118171 - | hypothetical protein TERM 118 118833 - 118870 + g 78 -14.1 -2.62263 | overlap 118842 118843 GATTGAAACCCTGGT CGATGGCGTCCTGCGCC AGAC GGCGCAGCTTGTCATCG TCATATCCCAGCCAT TERM 119 118843 - 118860 + g 71 -12.7 -2.66692 | overlap 118842 118833 CTGGTCGATGGCGTC CTGCGCC AGAC GGCGCAG CTTGTCATCGTCATA TERM 120 119562 - 119605 + r 81 -10.6 -3.65425 | gap 1, opp_overlap 119560 119559 119571 119575 CTCACTTAAAAACGG GTCATTATACGAAGAGTCATT GAA AATGACTCTTCGTATACC-AC TTTAGAATATCTCAA TERM 121 119597 - 119571 - R 100 -16.8 -2.79312 | opp_overlap 119562, overlap 119560 119559 119575 AAACGGGTCATTATA CGAAGAGTCATT GAA AATGACTCTTCG TATACCACTTTAGAA TERM 122 119593 - 119575 - R 72 -10.4 -3.29471 | opp_overlap 119562, overlap 119571 119560 119559 GGGTCATTATACGAA GAGTCATT GAA AATGACTC TTCGTATACCACTTT Avi_5130 120515 - 119703 - | hypothetical protein TERM 123 120449 - 120474 + g 84 -7.5 -4.72272 | gap 1, overlap 120441 120440 GAATGGTGGCAAGTT CCGGTGGGGGCC ATT GGC-CTTGCCGG TTTTTCATGAGCCAG Avi_5131 121522 - 120518 - | oxidoreductase TERM 124 121583 - 121557 - R 100 -17.3 -3.5771 | opp_overlap 121554, overlap 121574 AAAAATCCGGGGAAA CGGCACGCGAG ATGAA CCCGCGTGCCG CAATTACATCAATAA rbsB 122533 - 121592 - | ABC transporter substrate binding protein (ribose) TERM 125 122111 - 122132 + g 87 -12.9 -3.8211 | CTGGATCATCGCCTT GGCCGCCAG TTCA CCGGCGGCC TTGTTGTCCGTCGCC rbsC 123681 - 122632 - | ABC transporter membrane spanning protein (ribose) TERM 126 123307 - 123262 - G 76 -11.7 -3.34192 | opp_overlap 123274 AAGGGTCGCAATGAA CGGCGGCAGCTTCAGCCTGGT AATG ACCAGGCCATTGATGACGCCG CAGGCCGTGCCGGTG rbsA 125248 - 123674 - | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 127 123950 - 123967 + g 71 -7 -4.15833 | AAAGAACATGATCTT TGGCTG CCGGAA CAGCCA TTTTCCAATAATGAT TERM 128 125056 - 125076 + g 80 -14.1 -2.75081 | overlap 125053 125052 CTCTCTGGTAGACGC CGCTGATGA TCT TCATCAGCG TGGATTTTCCGGCTC TERM 129 125315 - 125333 + H 70 -6.8 -4.11304 | opp_overlap 125318, overlap 125318 TAGGGCATGCTGCGA TAATTGGT CAA GCCAATTA TTCTTTCTCGCTTGC TERM 130 125730 - 125763 + G 83 -13.9 -3.34233 | gap 1, overlap 125732 125734 GTTATCGTCAAGGCC GCTGCCGCAATGACCG ATG CGGTTTTTGCGGC-GC TTGTCGGGATTGTCG TERM 131 125732 - 125762 + G 74 -14 -2.60219 | overlap 125730 125734 TATCGTCAAGGCCGC TGCCGCAATGACCG ATG CGGTTTTTGCGGCG CTTGTCGGGATTGTC TERM 132 125734 - 125751 + G 70 -4.1 -4.58283 | overlap 125732 125730 TCGTCAAGGCCGCTG CCGCA ATGACCGA TGCGG TTTTTGCGGCGCTTG Avi_5136 125415 - 126086 + | transcriptional regulator GntR family TERM 133 126746 - 126758 + G 72 -9.1 -3.86202 | ACCTTCACTTATGGC GACCG TAG CGGTC TTTGGTATGATACCG TERM 134 126807 - 126787 - g 75 -5.4 -4.62471 | gap 1, opp_overlap 126801 CGGAACCTTCAAAAA GGCAGGCAT CACC ACGCC-GCC TAAGGATTGGGCGCA Avi_5137 126281 - 127582 + | bacterial extracellular solute-binding protein TERM 135 127619 - 127632 + F 73 -9.5 -3.61398 | CACGGACGGGAGGGA GCGCC AGCC GGCGC TTCTTCCAGACGGAC TERM 136 127672 - 127684 + F 73 -9.1 -3.66742 | overlap 127670 GCTCTCGTCCTGCTG GCACC CAT GGTGC TGTTATTTCTGTGCG malF 127678 - 128505 + | ABC transporter membrane spanning protein (maltose) aglG 128502 - 129326 + | ABC transporter membrane spanning protein TERM 137 129373 - 129363 - f 85 -8.2 -4.56597 | TGTCCCGGCCAAAAA CCGG CCA CCGG GAGGAGAAATCATAT Avi_5140 129387 - 130469 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_5141 130508 - 132733 + | hypothetical protein Avi_5142 132809 - 134881 + | hypothetical protein Avi_5143 134941 - 135972 + | transcriptional regulator LacI family TERM 138 136773 - 136715 - f 70 -3.8 -4.68919 | overlap 136718 136723 AAAGACAAACGAAAA CAAGAGAACTTAGAGTCTGTCTGGTTCA ATA TGAAGCTGACAGACTCTAAGACCAGACA AGCACAGTAAATCGC TERM 139 136770 - 136718 - f 90 -9.9 -4.40882 | overlap 136715 136723 GACAAACGAAAACAA GAGAACTTAGAGTCTGTCTGGTTCA ATA TGAAGCTGACAGACTCTAAGACCAG ACAAGCACAGTAAAT TERM 140 136765 - 136723 - f 100 -19.4 -3.97437 | overlap 136718 136715 ACGAAAACAAGAGAA CTTAGAGTCTGTCTGGTTCA ATA TGAAGCTGACAGACTCTAAG ACCAGACAAGCACAG Avi_5146 136830 - 137720 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) TERM 141 138355 - 138373 + G 70 -4.5 -4.52781 | gap 1, overlap 138355 138356 CGGGCTCTTGTGGGG C-GCGCGC TCCG GCGTGCAG TTTTCCTTGTCCTTG Avi_5147 137717 - 138616 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 142 139438 - 139456 + G 83 -8 -4.56597 | TATCATTGGCGGTCT GGCCTCGC TGC GCGGCGCC TTTTTCGGGGCGGCC Avi_5148 138620 - 139675 + | ABC transporter membrane spanning protein (branched chain amino acid) TERM 143 139755 - 139731 - f 70 -9.9 -3.15996 | overlap 139729 CATCATCCATGAACA CGTCCGATGCG CAT CGCACCGGGCA ATACCAGGAGTGTAT TERM 144 140536 - 140525 - g 71 -7.2 -4.11773 | AAACAGCTGCCAAAA CCGG CTTT CCGG TGGACCATATCATTG TERM 145 141095 - 141074 - g 71 -10.9 -3.19178 | gap 1, overlap 141072 141064 ATAAAGGCATCAAGA TCCGCA-CGG CTG CCGATGCGGA TGGCGTTACCAATTA Avi_5149 139777 - 141111 + | hypothetical protein TERM 146 141199 - 141226 + F 72 -7 -4.19238 | opp_overlap 141200, overlap 141200 141202 GTTTGCCTTGGAAAA ACAGCCCATC GACAACGA GATGGGCTGA TTTTGCGGTTCAGCG TERM 147 141200 - 141225 + F 72 -10.5 -3.11222 | opp_overlap 141200, overlap 141199 141202 TTTGCCTTGGAAAAA CAGCCCATC GACAACGA GATGGGCTG ATTTTGCGGTTCAGC TERM 148 141225 - 141200 - f 95 -10.5 -4.56597 | opp_overlap 141200 141199 141202 TTTGCCTTGGAAAAA CAGCCCATC GACAACGA GATGGGCTG ATTTTGCGGTTCAGC TERM 149 141570 - 141538 - g 100 -15.6 -4.27617 | gap 1, opp_overlap 141541 TAGATGTCACCAAAA CAAGCCCGGCGGCGC TGGT GCGC-GCCGGCCTTG TACAGGTATTGGAAG TERM 150 141541 - 141567 + G 73 -11.5 -3.33315 | gap 1, opp_overlap 141538 ATGTCACCAAAACAA GCCCGGCGGCGC TGGT GCGC-GCCGGCC TTGTACAGGTATTGG TERM 151 141738 - 141719 - g 78 -4.2 -4.90778 | gap 1, overlap 141720 141721 CCGACTGAAAGAAAA GCGCCGGAC ACT GTCGGGC-C TCACCTCCGGTGGCG TERM 152 141907 - 141927 + G 71 -11.2 -3.27498 | GGCTATCCATTCTCG TCGCCGAA CAAAA TTCGGCGA TTGCTCTCACCTATG Avi_5150 141303 - 142076 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) TERM 153 142180 - 142210 + T 100 -17 -3.60814 | overlap 142171 GCTGTATCGTTGATA CCCTCTGACACG GTTTCCG CGTGTCAGAGGG TTATCTATACCATTT mcpC 144624 - 142294 - | methyl-accepting chemotaxis protein TERM 154 145685 - 145699 + G 71 -7.1 -4.24342 | AAATTTGCCGCGCGC CACGC CGAAT GCGTG TTTATTGGTGCCACG TERM 155 145871 - 145899 + G 79 -7.4 -4.56597 | gap 1, overlap 145873 GCGGATTATCGCCGC TATGCCAG-CCCG GAAG CGGGCCTGGCGCA TTTTTCGGCCGGAAG Avi_5152 144962 - 146326 + | nitrilotriacetate monooxygenase TERM 156 146322 - 146349 + F 75 -6.8 -4.42386 | opp_overlap 146322 146326, overlap 146324 ATCGACACACGGAAA GGTAGCGCCGCG ACAT CGCGGCGAGAAC TTTTATGCCTGGCAA TERM 157 146425 - 146439 + F 81 -6.4 -4.87665 | overlap 146421 146422 146435 CCATGACGAGTCCGC CGCATT GGC AGTGCG TTTTTCTCCATGGCC Avi_5154 146569 - 147972 + | nitrilotriacetate monooxygenase acd 148007 - 149275 + | acyl-CoA dehydrogenase TERM 158 149683 - 149697 + G 71 -7.1 -4.17316 | GCTCTCTGGTTCCGA TGCGC AGAAG GCGCA TTATTTTCAGCGGGT acd 149297 - 150559 + | acyl-CoA dehydrogenase TERM 159 150555 - 150567 + F 74 -6.3 -4.52589 | opp_overlap 150529 CACGCCACGGGGCCA TCTGA CGT TCAGA TTTTCTATCCGCCGG TERM 160 150577 - 150604 + F 100 -12.7 -4.64676 | overlap 150578 TTCAGATTTTCTATC CGCCGGGTGCA TACCTC TGCACCCGGCC TTTTCTTGACCATAG TERM 161 150578 - 150603 + F 100 -16.2 -3.38324 | overlap 150577 TCAGATTTTCTATCC GCCGGGTGCA TACCTC TGCACCCGGC CTTTTCTTGACCATA Avi_5157 150631 - 151674 + | hypothetical protein TERM 162 151688 - 151713 + T 100 -17.7 -4.35926 | opp_overlap 151688 AAGGACAAACAAAAA CGGCCTGAACA GAAA TGTTCAGGCCG TTTTACATTTCAGAT TERM 163 151713 - 151688 - T 100 -17.7 -5.4182 | opp_overlap 151688 AAGGACAAACAAAAA CGGCCTGAACA GAAA TGTTCAGGCCG TTTTACATTTCAGAT Avi_5158 152992 - 151739 - | hypothetical protein TERM 164 152014 - 152032 + g 80 -10.2 -3.95787 | TTTCATGCAGGTTAT GGGGGCCA AAA TGGCCGCC TTTCTGGGTGTAATC Avi_5159 154069 - 153026 - | ABC transporter binding protein rbsC 155147 - 154101 - | ABC transporter membrane spanning protein (ribose) TERM 165 154775 - 154761 - G 75 -4.2 -4.77036 | overlap 154762 154765 CTTGACGATCAAAAA GGCATT GGC AAAGCC AATCAACGCGCCAAA rbsA 156628 - 155147 - | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 166 156251 - 156273 + g 74 -6.1 -4.45544 | opp_overlap 156250 156251 CGCGTCACTCAAAAT GCGCGCTGC CTCAC GCCGCACGC TTTTGGTTGATAGAA TERM 167 156305 - 156293 - G 84 -2.6 -5.36441 | GGTTGATAGAAAAAA CGGC TGACG GCCA TCGATATAGTGATTG Avi_5162 156998 - 158044 + | ABC transporter binding protein TERM 168 158082 - 158105 + T 100 -16.8 -4.32903 | opp_overlap 158082 CTGCGCAGACAAAAA CGGAAGCACC TCAC GGTGCTTCCG TTTTCCATGTTTGAT TERM 169 158105 - 158082 - T 100 -16.8 -4.96848 | opp_overlap 158082 CTGCGCAGACAAAAA CGGAAGCACC TCAC GGTGCTTCCG TTTTCCATGTTTGAT Avi_5163 159442 - 158120 - | O-acetylhomoserine sulfhydrylase rbsB 159786 - 160799 + | ABC transporter substrate binding protein (ribose) TERM 170 162262 - 162299 + G 75 -5.6 -4.58395 | gap 1, opp_overlap 162287, overlap 162264 TCCTGTCGTCCGACC TGCCGGAA-CTGGTTGG CATAA CCGACCGGATTCTGGTG TTTTTCCGGGGTCGG rbsA 160872 - 162425 + | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 171 163324 - 163339 + G 74 -2.4 -4.89852 | overlap 163319 163325 163333 CCAACCATTCCCGGC ACGCTG GTTT CGGCGA TTTTTGTCGGTGTGC rbsC 162415 - 163464 + | ABC transporter membrane spanning protein (ribose) Avi_5169 163472 - 164473 + | ABC transporter membrane spanning protein (sugar) TERM 172 164733 - 164748 + G 74 -2.6 -4.88495 | gap 1, overlap 164733 TTGCCGCCACCATGA CC-AAGA CAA TCTTCGG TTTTGTTCTCTCTCT Avi_5170 164714 - 165550 + | ABC transporter substrate binding protein (amino acid) TERM 173 165636 - 165594 - f 89 -13.7 -3.23393 | opp_overlap 165603, overlap 165592 TTCGACTTCAGAAGA TTTCGAATATCTCAAACCC ATCAA AGGCTTGGGATATTCGAAA ATGAAATACGGCGCG TERM 174 165975 - 165987 + G 71 -7.7 -4.06384 | overlap 165966 165983 GCCGACGCTGGTACA GCTGA TGT TCAGC TTTCTGGTGTTGAAC TERM 175 166026 - 166053 + G 74 -2.7 -4.89339 | gap 2 GTCCAATCTTGTCGG TGGCG-C-GCAGA ACAA TCCGCTGACGCCA TTTTTCTGGGTGGTT Avi_5171 165712 - 166458 + | ABC transporter membrane spanning protein (amino acid) Avi_5172 166455 - 167237 + | ABC transporter membrane spanning protein (amino acid) Avi_5173 167250 - 168035 + | ABC transporter nucleotide binding/ATPase protein (amino acid) Avi_5175 168044 - 169405 + | hypothetical protein TERM 176 169496 - 169538 + G 71 -6.9 -4.15565 | gap 1 GGGCTGGCCACCATG TCTCCGGCTGGCGGCATCCG AATG CGGAAGCCGGCAGC-GAAAA TTTTGACCTGCTGCG Avi_5176 169438 - 170727 + | monooxygenase Avi_5177 171736 - 170735 - | Ketopantoate reductase Avi_5178 172917 - 171736 - | acyl-CoA dehydrogenase-related protein TERM 177 172965 - 173007 + r 84 -4.2 -5.27938 | gap 1, overlap 172968 AGCCGCCGGGTGAGG CT-TGAGCATCGTGCAG AAATTGGAAC CAGCACGATGCTCTCAG TTTTTGTTTGCGCAT TERM 178 172968 - 173003 + r 71 -10.5 -2.95994 | overlap 172965 CGCCGGGTGAGGCTT GAGCATCGTGCAG AAATTGGAAC CAGCACGATGCTC TCAGTTTTTGTTTGC ssuD 174173 - 173070 - | sulfonate monooxygenase Avi_5180 175425 - 174340 - | monooxygenase moaD 177158 - 175422 - | ABC transporter nucleotide binding/ATPase protein dppC 177985 - 177137 - | ABC transporter membrane spanning protein (dipeptide) TERM 179 177790 - 177805 + g 75 -5.4 -4.56597 | gap 1, opp_overlap 177783, overlap 177783 177791 CGAACCAATGCTGTG C-GCTGG GTG CCAGCAG TTTTTGAGCGGGAAC TERM 180 177911 - 177934 + g 83 -4.6 -5.09895 | gap 1, opp_overlap 177905 TGAGATGAACACCGT TGG-CGGCA TGTGGAC TGCCGACCA TTTTTTGGCTGCCTG Avi_5183 178992 - 177982 - | ABC transporter membrane spanning protein (oligopeptide) Avi_5184 180669 - 179017 - | ABC-type transporter, substrate binding protein TERM 181 179236 - 179263 + g 82 -10.6 -4.16921 | gap 1 TAGCTCATTGATCTT CTGG-TCGCTCTG GTC CAGCGCGAACCAG TTTTCGCCATTATTG TERM 182 180145 - 180157 + g 86 -9.1 -4.56775 | opp_overlap 180145, overlap 180152 GAGGGTTGGAATGAA GCCGA GCG TCGGC TTTTTGAAGACGACT TERM 183 181722 - 181697 - g 74 -6.1 -4.41494 | TACGGTCAATCAAAA CGGCACTCTCA ATAT CGAGAATGGCG GTACTGTCGACGCAA Avi_5186 181293 - 184463 + | outer membrane autotransporter TERM 184 184488 - 184521 + G 75 -5.2 -4.56597 | gap 1, opp_overlap 184468, overlap 184489 184491 CCAAAATTGTTGCGA TC-ATGGTGGCCGCG AATGC CGCGTCCACCGTCGC TTTTTCACAAGACAG invB 184463 - 184990 + | Invasion protein B TERM 185 185383 - 185401 + G 78 -3.8 -5.00616 | overlap 185386 TCCTTTCCCGCCCAG CATGTTCA TCC TGGACCTG TTTTTTGAGGGAAAC Avi_5188 185225 - 185887 + | two component response regulator Avi_5189 187477 - 185858 - | Signal transduction histidine kinase TERM 186 187902 - 187936 + r 100 -20.9 -2.80816 | gap 1 CAGGTCTGCCGGCAA TCTGATGGGACGCGGC ATCT GCCGCGTCCCATC-GA TGTCATCGATCAGAC katA 190129 - 187946 - | catalase TERM 187 190887 - 190857 - R 100 -16.2 -2.8785 | overlap 190849 TAATTAACCAGTAGA GCCTGTCTGGTTCA GCG CGAACCTGACAGGC GTCTAAGACGCTGTC Avi_5192 191459 - 190980 - | hypothetical protein dapA 192489 - 191548 - | dihydrodipicolinate synthase TERM 188 192515 - 192542 + r 75 -11.3 -2.87132 | TATTGGATTTCGAAT GCGCTTTCCGG TACAAT CCGGAAAGCGG TATGTCAGGGAAAGG Avi_5194 193880 - 192570 - | Permeases of the major facilitator superfamily TERM 189 192739 - 192756 + g 79 -6.9 -4.56597 | opp_overlap 192739 AAATTCTGCAGGGAA CCGAGTG ACGC CACCCGG TTTTTCGGAGCAACG TERM 190 192935 - 192949 + g 73 -3.4 -4.74215 | TGCGACGACCACGGA CCGGTG AAG CCTCGG TTTTCTTAATGATCT Avi_5195 194252 - 195328 + | transcriptional regulator LacI family TERM 191 196002 - 195986 - g 77 -7.9 -4.36914 | opp_overlap 195984 195987, overlap 195987 GCCTGCTTGACAAAA GCCCGGT CGA ACCGGGT GCTGTTGCCGCCGAT TERM 192 196001 - 195987 - g 71 -11.4 -3.21934 | opp_overlap 195984 195987, overlap 195986 CCTGCTTGACAAAAG CCCGGT CGA ACCGGG TGCTGTTGCCGCCGA TERM 193 196117 - 196135 + G 75 -12.4 -3.17685 | opp_overlap 196098 CCGGCGCTTGCCAGT TCGGCGCC AGA GGCGCTGA TTGCCTATCTCCTTG Avi_5196 195955 - 196950 + | hypothetical protein TERM 194 197055 - 197072 + G 79 -5.5 -4.75518 | overlap 197057 CATCCAAGCGTTCCC GCTGACG CCAG CGTCAAC TTTTCCTTTTATGTG TERM 195 198277 - 198265 - g 71 -10.5 -3.53012 | TGCCTTTCCGTGAAA GCCGC TAT GCGGC GACATCAGCTGACAA Avi_5198 197025 - 198317 + | monooxygenase TERM 196 198311 - 198359 + F 100 -11.1 -5.41746 | opp_overlap 198322 CACAACAAGGGCAGC CAGCTAGAGCATTTCCGCGTTTC CTG GAAACGCATGAATACTCTAACTG TTTTTTTAACGCATT Avi_5199 198440 - 199651 + | hippurate hydrolase Avi_5200 199667 - 200209 + | acetyltransferase Avi_5205 202072 - 203010 + | ABC transporter substrate binding protein TERM 197 203021 - 203049 + F 90 -7.4 -5.01732 | overlap 203023 CGTAACCTGTACAGC TTTGGGGCGG TCATCAGCT CCGCCCCATA TTTTTTCAGGAGGTT TERM 198 203023 - 203047 + F 83 -10 -4.13561 | overlap 203021 TAACCTGTACAGCTT TGGGGCGG TCATCAGCT CCGCCCCA TATTTTTTCAGGAGG Avi_5206 203068 - 204003 + | ABC transporter substrate binding protein TERM 199 204001 - 204020 + F 77 -8.6 -4.05033 | gap 1, opp_overlap 204005, overlap 204005 GGCCTGCCAAGCTAT TGAAGCGCC TGC GGCGC-TCA TTTCTCTCGCGTAAA TERM 200 204017 - 204005 - f 72 -10.5 -3.09933 | opp_overlap 204001 204005 TGCCAAGCTATTGAA GCGCC TGC GGCGC TCATTTCTCTCGCGT TERM 201 204005 - 204017 + F 72 -10.5 -3.06686 | opp_overlap 204005, overlap 204001 TGCCAAGCTATTGAA GCGCC TGC GGCGC TCATTTCTCTCGCGT TERM 202 204832 - 204866 + G 78 -9.1 -4.10161 | opp_overlap 204837 CGCTGGGCGCCTGGA GCGAACGCTGCACCC GAATG GGGAGCGCCGTACGC TTTTCCCGCGTGATC Avi_5208 204047 - 205126 + | monooxygenase envZ 206522 - 205200 - | two component sensor kinase TERM 203 206021 - 206005 - G 90 -2.9 -5.67283 | overlap 206015 AAGGCAAAGAAAAAA GCGATCA AGA CGACCAC GGCGATAAAGTAATA TERM 204 206176 - 206149 - G 78 -3.2 -5.08824 | gap 1, overlap 206150 206151 CGGCCATCCAAAAAA GCGCGCCAGCCGC CAA GGGGC-GGCTCTC CATCAGGCGGAAACA petR 207240 - 206515 - | two component response regulator Avi_5211 207483 - 208559 + | HlyD family secretion protein TERM 205 210161 - 210171 + G 74 -8.2 -4.1721 | TTGACGATCCTGTTT GCGG TTG CCGC TTTTGCCCTGTCCCT TERM 206 210489 - 210501 + G 75 -5.5 -4.65168 | overlap 210490 GCAAGATCGAAGCTG TGCTC AAT GAGCG TTTTTCGGATCTCGT Avi_5212 208556 - 211660 + | AcrB/AcrD/AcrF family protein Avi_5213 211816 - 212613 + | hypothetical protein Avi_5215 213627 - 212692 - | AraC-type DNA-binding domain-containing protein Avi_5216 213879 - 215264 + | nitrilotriacetate monooxygenase TERM 207 215269 - 215300 + F 100 -14.4 -3.91144 | gap 1, opp_overlap 215287 CTGCTGAATAATGTC GCAGGGGAGCCTGAC CAA GCCGGGCTCCCC-GC TTTGTCAGATCTGGA Avi_5217 215384 - 215833 + | flavoprotein oxidoreductase TERM 208 215961 - 215923 - T 100 -14.8 -3.55071 | opp_overlap 215927, overlap 215927 TGAGACCTTTTCAAA GGAATACCTGGAGTCATT TTC AATGACTCCAGGTATTAT GTAAATAAGCGTGCT TERM 209 215927 - 215957 + T 100 -20 -3.51924 | opp_overlap 215923 215927 ACCTTTTCAAAGGAA TACCTGGAGTCATT TTC AATGACTCCAGGTA TTATGTAAATAAGCG TERM 210 215957 - 215927 - T 100 -20 -3.51411 | opp_overlap 215927, overlap 215923 ACCTTTTCAAAGGAA TACCTGGAGTCATT TTC AATGACTCCAGGTA TTATGTAAATAAGCG Avi_5218 217585 - 216095 - | Permeases of the major facilitator superfamily TERM 211 216829 - 216809 - G 72 -6.7 -4.34267 | overlap 216811 GGAGATAAGCCAAAA GGCAGCGGG GAT CCCGATGAC GGCGATCGCGATTGC Avi_5219 218972 - 217671 - | oxidoreductase TERM 212 219085 - 219098 + r 70 -3.7 -4.65263 | opp_overlap 219085 AACTCCGGAGGAAGA CCCCC TACA GGTGG TTTGTTTTGCAAGGT Avi_5221 219827 - 219306 - | hypothetical protein TERM 213 219727 - 219740 + g 72 -9.5 -3.67918 | TCTGGCGATGGATCC GCCGC GACC GCGGC TTTGAACTCTTCGTT TERM 214 220098 - 220111 + r 70 -3.7 -4.67353 | overlap 220083 CTCCTTTGATTGATC GCACC CAAA GGCGC TTTTTAGATCAATCC Avi_5222 220856 - 220317 - | transcriptional regulator TERM 215 220821 - 220835 + g 75 -5.6 -4.58395 | overlap 220809 220823 AATGCCGCGCATGGT GACAGC AGC GCTGCC TTTTTGACCAATGAG TERM 216 221007 - 220993 - H 74 -2.8 -4.99134 | opp_overlap 220993 220994, overlap 220994 ACGCCAAAGTAAAAA TTGACA CAG TGTCAG CTTTTCTCAATTACC Avi_5223 221145 - 222434 + | oxidoreductase Avi_5224 222434 - 223600 + | hypothetical protein TERM 217 223583 - 223609 + T 70 -7.2 -4.05816 | overlap 223584 ATCGAAACCTGGCCC ACTCTTCCGCCG GGT TGACGGAAGAGG TTTGTGATCCTTTTA TERM 218 223584 - 223608 + T 72 -10.7 -3.02405 | overlap 223583 TCGAAACCTGGCCCA CTCTTCCGCCG GGT TGACGGAAGAG GTTTGTGATCCTTTT fadL 224841 - 223660 - | long-chain fatty acid transport protein TERM 219 224084 - 224052 - G 72 -9.7 -3.69434 | overlap 224055 TCAAGGAACCGTAAA CCAGCCAACCCGGCG CGA CGCCGGTCTGGGCAG AGAGCTTGATCGACT Avi_5226 226816 - 225377 - | aldehyde dehydrogenase TERM 220 226018 - 225990 - G 75 -3.8 -4.82901 | gap 1 TGTCGTGGATAAAAA GCCTCTG-CCTGA GAGA TCAGGGCGGATGC AAGGTCTCCAAGTTT Avi_5227 227971 - 226820 - | MFS permease TERM 221 227027 - 227042 + g 71 -6.8 -4.20531 | opp_overlap 227026, overlap 227028 GGTTCGTGACATCAC TGACCC GTCG GGGTCG TTTTCGGTCAGTATA TERM 222 227833 - 227850 + g 73 -11.3 -3.48064 | opp_overlap 227815, overlap 227812 CCGCGAGTTCCGCGC TGGCGAC GATT GTCGCCA TTGCTTCGTTATAGC Avi_5228 228408 - 229439 + | AraC-type DNA-binding domain-containing protein TERM 223 229470 - 229487 + F 81 -4.8 -5.09173 | CAAAGGACAGCTTCA CCGCTA CGCAAA TGGCGG TTTTTTCCCCTATTA TERM 224 231109 - 231123 + G 73 -12.8 -2.72829 | opp_overlap 231103, overlap 231108 TTCACGGAACTCCAT CGGCGC CTG GCGCCG CTTTACAAACGTCTG Avi_5229 229570 - 231168 + | xylulose kinase Avi_5230 231161 - 231814 + | L-fuculose-phosphate aldolase atrB 231816 - 233276 + | glutamate-1-semialdehyde aminotransferase TERM 225 233831 - 233806 - g 79 -6.9 -4.59109 | gap 1, opp_overlap 233811 GAGATCCTGGAAAAA TGCGC-TGAATG TTT CATTCTTGCGCA AAGTGCCACAGTCAA Avi_5232 233284 - 233967 + | hypothetical protein TERM 226 234020 - 234040 + F 70 -3.9 -4.65895 | GCAGGCCAATGGTGC GATTGCTGC GTG GAAGCTATC TTTTTGCATCGCCGG Avi_5234 234179 - 235228 + | hypothetical protein Avi_5235 235257 - 236084 + | oxidoreductase protein Avi_5237 236171 - 236833 + | hypothetical protein Avi_5238 238167 - 236944 - | hypothetical protein TERM 227 237925 - 237913 - G 78 -6.2 -4.67234 | opp_overlap 237924 ATGCAATCCGAAAAA GCCG TCGAG CGGC AGCACCGGCTTGTCG Avi_5240 239745 - 238171 - | hypothetical protein TERM 228 239049 - 239037 - G 74 -6.9 -4.2828 | GGTTATCGAGGAAAA CCAGC ATG GCCGG ATGGGTTTCGACCGC TERM 229 239297 - 239311 + g 74 -2.7 -4.87665 | overlap 239298 TAGGGACGCTTGGAG ACCGG CATAT CCGGC TTTTTGTCCATGGAC TERM 230 239746 - 239776 + r 73 -9.2 -3.57971 | gap 1 GTTGGAATTGGACAT GGCCGAT-ATGAA CTCCGT TTCATCATCGGCC TTTCAACGTCGCTAT Avi_5241 240271 - 239822 - | hypothetical protein TERM 231 240203 - 240188 - G 77 -2.4 -5.08178 | overlap 240190 ATAGAGATAGAAAAA CCCGGC ACCG GCAAGG GCGCAGATCAGGAAG Avi_5242 240705 - 240268 - | hypothetical protein sigW 241276 - 240698 - | ECF family sigma factor TERM 232 241566 - 241543 - R 95 -15.3 -3.01712 | opp_overlap 241533, overlap 241545 GCTGCCCCGGGAATA CAGGCCGGG TTTTCG CCCGGCCTG CCGATCATCAACGCT TERM 233 241564 - 241545 - R 79 -12.1 -3.06696 | opp_overlap 241533, overlap 241543 TGCCCCGGGAATACA GGCCGGG TTTTCG CCCGGCC TGCCGATCATCAACG phnA 241969 - 241574 - | alkylphosphonate uptake protein TERM 234 242247 - 242227 - g 77 -2.3 -5.06816 | overlap 242228 242229 ATGGTTCAACAAAAA GGCGCCCTC TCG GCGGTTGCC AAACTCTGGCTGATC Avi_5248 242212 - 244641 + | pyrroloquinoline-quinone-dependent quinate dehydrogenase TERM 235 244687 - 244662 - T 100 -16.1 -3.32914 | opp_overlap 244663, overlap 244653 244663 ATCCAATGACAGCAA TCCGCCCGGAG GCAG CTCCGGGCGGT TTCTATTTTCCCATC TERM 236 244663 - 244686 + T 100 -19.6 -4.45771 | opp_overlap 244662 244653 244663 TCCAATGACAGCAAT CCGCCCGGAG GCAG CTCCGGGCGG TTTCTATTTTCCCAT TERM 237 244686 - 244663 - T 100 -19.6 -2.59267 | opp_overlap 244663, overlap 244662 244653 TCCAATGACAGCAAT CCGCCCGGAG GCAG CTCCGGGCGG TTTCTATTTTCCCAT Avi_5249 245893 - 244751 - | transcriptional regulator ROK family TERM 238 246012 - 246026 + G 77 -10 -3.92522 | AATGCCTCGCCCTTC TCGCCA CCG TGGCGA TTTCTGCGCTTGCCA TERM 239 246973 - 246961 - g 72 -6.2 -4.36914 | opp_overlap 246961, overlap 246962 CCCGGCTGCAGAAAA GGGC GGCAA GCCC GCCAATCTTTCCCAC Avi_5250 245990 - 247363 + | ABC transporter substrate binding protein (sugar) TERM 240 247378 - 247408 + F 100 -14.6 -4.04295 | overlap 247379 AACTCGGCCCTGCTG CGTGCCGCCCGTCT CTT GGTCGGGCGGCACC TTTCATTCTCATTGG TERM 241 247379 - 247407 + F 100 -18.1 -3.01854 | overlap 247378 ACTCGGCCCTGCTGC GTGCCGCCCGTCT CTT GGTCGGGCGGCAC CTTTCATTCTCATTG TERM 242 247490 - 247513 + G 84 -3.8 -5.24129 | gap 1, overlap 247487 247491 ATTCTTTACCTCGCG C-CGGCAATCG CGC TGCTTGCCGTG TTTTTTCTGGCGCCG TERM 243 247491 - 247511 + G 74 -7.5 -4.25873 | overlap 247487 247490 TTCTTTACCTCGCGC CGGCAATCG CGC TGCTTGCCG TGTTTTTTCTGGCGC Avi_5252 247433 - 248344 + | ABC transporter membrane spanning protein (sugar) Avi_5253 248344 - 249408 + | ABC transporter membrane spanning protein (sugars) Avi_5254 249414 - 250526 + | ABC transporter nucleotide binding/ATPase protein (sugar) ugpQ 250539 - 251261 + | glycerophosphodiester phosphodiesterase Avi_5256 251366 - 252814 + | hypothetical protein Avi_5257 253247 - 252873 - | acetyltransferase TERM 244 253297 - 253321 + r 100 -13.6 -3.65199 | overlap 253298 AAATCTGGTTTCCCC TCCGCCCATG CAAGC CATGGGCGGG TTTCGATAAACAGTT TERM 245 253298 - 253320 + r 90 -14.9 -2.78798 | overlap 253297 AATCTGGTTTCCCCT CCGCCCATG CAAGC CATGGGCGG GTTTCGATAAACAGT Avi_5258 253761 - 253450 - | hypothetical protein Avi_5259 254432 - 253758 - | hypothetical protein TERM 246 254724 - 254747 + H 71 -9.5 -3.53091 | opp_overlap 254714 254724 ATAATGCTCGAATGA CGGGCGCCT TGTGGT GGGCGCTCG TTTCAAGGGCAGCGT TERM 247 257479 - 257499 + G 74 -13.3 -2.53263 | opp_overlap 257476 257474 CCGCGACCAATAGTG CCGGAACCG GGA CGGTTTCGG TCGCTTCGAACTCGG TERM 248 257971 - 258004 + G 71 -12.5 -2.53911 | gap 1 GCGCCTCTGCCAGGA TTCTTTCCGGCACGCC GTC GGC-TGCCGGAACGAG TAACTTCACGGTTAA Avi_5260 254829 - 260468 + | hypothetical protein TERM 249 260689 - 260712 + F 70 -3.8 -4.68919 | opp_overlap 260668 260689, overlap 260668 260662 CAGGTTCAGATTGAA CAAGACAGAC TTTA GCCTCTCTTG TTTTCGTTTGTCTTT Avi_5261 260885 - 262903 + | Valyl-tRNA synthetase TERM 250 262950 - 262912 - f 71 -10.8 -2.97021 | opp_overlap 262916, overlap 262905 262907 GCGTTAAAGACCAGA CTCTCACAGCCTCGCCGC AGG GCGACGGGGCTGTGTTTG ACGTCGTTGTGGCAG TERM 251 262916 - 262946 + F 100 -19 -3.64609 | opp_overlap 262912 262905 262907 TAAAGACCAGACTCT CACAGCCTCGCCGC AGG GCGACGGGGCTGTG TTTGACGTCGTTGTG TERM 252 263607 - 263643 + G 71 -8 -4.07568 | gap 1, opp_overlap 263590 TCGCCCCAGCAGGCT GTGCGGCTGCGGCGATC TCCC GATTACCG-GGCTGCAC TTTTCACCGAAGCGC Avi_5262 262944 - 264044 + | hypothetical protein phaG 264431 - 264063 - | potassium efflux system protein TERM 253 264250 - 264240 - G 93 -5.4 -5.47218 | TGCCACTGAAAAAAA GATC ATC GATC CAAGCATGATCCCGC phaF 264709 - 264428 - | PH Adaption potassium efflux system phaE 265182 - 264706 - | phaE protein TERM 254 264872 - 264887 + g 81 -9 -4.35518 | opp_overlap 264872 ATGACCGCCAGCACA GCCAGT GCGA ACTGGC TTTTGATCTCCAGTT phaD 266813 - 265182 - | pH adaption potassium efflux system protein phaC 267145 - 266810 - | pH adaption potassium efflux system protein phaA 270048 - 267145 - | pH adaption potassium efflux system protein TERM 255 267522 - 267509 - G 70 -2.3 -4.84017 | opp_overlap 267512, overlap 267512 AACCCCGCAGAAAAA CCACC GCCC GGCAG GTCATGTCCACGCAT TERM 256 269696 - 269676 - G 83 -13.3 -3.55071 | TGACATTGCCCGAAA GCACGATGC CAA GCATCGCGC CCATGAAGGCGAGCA Avi_5270 270661 - 271647 + | hypothetical protein TERM 257 271844 - 271900 + G 84 -13 -3.66666 | gap 1 CTGGATGCCAAGCCG CGCTCTGCCATGG-CCTTTGCAGGCGT GCCA ACGCTTGCAAAGGATCTGGGCGGGCCG TTTGCGGGTTTTCCG TERM 258 272973 - 272987 + G 74 -7.8 -4.11216 | TGCTGGCCCCGATGG GCAGTG AGC CGCTGC TTTTGCAACTGGCCG gatA 271655 - 273064 + | glutamyl-tRNA amidotransferase subunit A Avi_5272 273061 - 274581 + | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 259 275262 - 275273 + G 79 -7.2 -4.57569 | CGGCTGGCCTCAATC CGGC AGGT GCCG TTTTTGCAGGCGTCC Avi_5273 274571 - 275620 + | ABC transporter membrane spanning protein (sugar) TERM 260 276359 - 276382 + G 80 -4.4 -4.92239 | overlap 276356 CCTCATGGCGTCCGG GCCGGGCACT GCTG GGTGCGCTGC TTTTTGCATTTTTCG TERM 261 276425 - 276453 + G 76 -5.1 -4.72272 | overlap 276427 276428 TGCGCCTGCAAACCG CTCTCGGTGGGGC CGT GCCCTACCAACTG TTTTTGATGACCCCC Avi_5274 275617 - 276561 + | ABC transporter membrane spanning protein (sugar) TERM 262 276737 - 276747 + F 70 -6.8 -4.14739 | GTCAGCCCACCCTTT TGCG ATC CGCA TTTTCACATGGATGC Avi_5276 276755 - 277867 + | hydrolase Avi_5277 279468 - 277861 - | cytosine deaminase Avi_5278 280511 - 279465 - | hypothetical protein TERM 263 280253 - 280236 - G 84 -2.6 -5.44119 | opp_overlap 280248 280249, overlap 280238 TTCAGCGGAAAAAAA CAGCCG CAGATC CGGCTC CCGTTCCCGTTGGCC TERM 264 280384 - 280359 - G 86 -8.9 -4.71382 | opp_overlap 280357 280356 ATAATGATCGAAAAA GCGGCGCATCT GGGC AGGTGTGCCGC CAATTTCGGCCAGGG Avi_5280 281344 - 280508 - | creatinine amidohydrolase TERM 265 280819 - 280833 + g 75 -10 -3.70902 | GCTCAGGCGCGATTG CCAGCA TCA TGCTGG TTTCGATGTCGCCGC Avi_5281 282822 - 281341 - | oxidoreductase Avi_5282 283612 - 282815 - | ABC transporter potB 284487 - 283609 - | ABC transporter membrane spanning protein potG 285590 - 284484 - | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 266 285003 - 284983 - G 81 -11.1 -3.91196 | opp_overlap 284981 284979 GTGACATAGACGAAA GCAATGCCG AGG CGGCGTTGC AGGTCTTTCAGCTCG potF 286676 - 285594 - | ABC transporter substrate binding protein (putrescine) TERM 267 285984 - 285968 - G 70 -12.3 -2.8001 | opp_overlap 285965, overlap 285957 AGAAGGCGCAGGACA CTTCGCC TGT GGCGAAG AGATTGGTGAGGTCG TERM 268 286744 - 286770 + r 93 -12.4 -3.96148 | opp_overlap 286743 286748, overlap 286748 CAAACGGCCATAAGG CAAAGGCTATAG TGT CTATTGCCTTTG TTTGTGATGGGGCGG TERM 269 286748 - 286766 + r 84 -7.4 -4.59342 | opp_overlap 286748 286743, overlap 286744 CGGCCATAAGGCAAA GGCTATAG TGT CTATTGCC TTTGTTTGTGATGGG Avi_5286 287790 - 286789 - | transcriptional regulator LysR family Avi_5287 290641 - 287951 - | two component response regulator TERM 270 291379 - 291349 - g 76 -12.5 -3.01924 | opp_overlap 291344 CATGCTGGTGGAACA TGCGCTAACGCGG TCCGT CCGCGATAGCGCC GCCCTTCTGGATGCG gatA 290717 - 292138 + | glutamyl-tRNA amidotransferase subunit A Avi_5289 292179 - 293732 + | ABC transporter TERM 271 294412 - 294427 + G 75 -11.8 -3.20382 | opp_overlap 294404 GATTATATCCGCACG GCCCGC GCGC GCGGGC TTCGTGAGTATCAGG Avi_5290 293788 - 294711 + | ABC transporter membrane spanning protein (oligopeptide) dppC 294708 - 295556 + | ABC transporter membrane spanning protein (dipeptide) moaD 295553 - 296386 + | ABC transporter nucleotide binding/ATPase protein TERM 272 296774 - 296756 - g 70 -4.5 -4.46233 | opp_overlap 296756 296754 CCAATTGGAAAGAAA TCGGCGA GAGCG TTGCCGA TCTTCTAGAGAAAGT moaD 296383 - 297267 + | ABC transporter nucleotide binding/ATPase protein Avi_5294 297354 - 299003 + | ABC transporter nucleotide binding/ATPase protein (peptide) Avi_5296 299389 - 299838 + | transcriptional regulator MarR family TERM 273 300075 - 300063 - g 72 -4.7 -4.56597 | overlap 300064 GCGCTCTGCGAAAAA GGCGG CAT CGGCC ACGAACAGTCCAGCC TERM 274 300434 - 300407 - g 73 -11.2 -3.36492 | gap 1, opp_overlap 300428 CGCCGAACCGCAGAA GGCCGCACCCGCC ATT GCCGAG-GCGGCC CGCGACCGGGGCGCC TERM 275 300428 - 300449 + G 79 -12.9 -3.21099 | opp_overlap 300407 ACCCGCCATTGCCGA GGCGGCCCG CGAC CGGGGCGCC TTCATCCTCACCGAA Avi_5297 299916 - 301247 + | oxidoreductase TERM 276 301608 - 301634 + G 88 -11.6 -4.18494 | opp_overlap 301598 301597, overlap 301603 TCAAGGGACAGCTGA CTGTCGGCTTTT CCC AGGAGCCGACGG TTTTCAATCCGCATA Avi_5299 301451 - 303121 + | ABC transporter substrate binding protein (oligopeptide) TERM 277 303247 - 303216 - f 71 -10.7 -2.87132 | opp_overlap 303218 CTTTGTGCGCATATA TGGCGCACGGCGC TGTAGT GCGCCGGACGCCT CGGCGTCCGGCATGC TERM 278 304184 - 304206 + G 75 -9.8 -3.82191 | AGCCGTCTTCGCACT GATCGGCAGC CTT GTCGCCGATC TTCTTGTCGCATTCG Avi_5300 303297 - 304247 + | ABC transporter membrane spanning protein (oligopeptide) TERM 279 304814 - 304836 + G 71 -7.6 -3.9941 | overlap 304809 304815 ATTGTGGAAGCGGAG GTGCGTTCGC TGC GCGAGCGCGA TTTCGTTATGGCCGC Avi_5301 304280 - 305170 + | ABC transporter membrane spanning protein (oligopeptide) TERM 280 305219 - 305267 + F 100 -17.6 -5.00884 | opp_overlap 305222, overlap 305222 CAAACGAAAACAAGA AAAGCGAGAGTCTGTCAGGTCC AATCC GAACCTGACAGACTCTAGCTTC TTTTTTGAAAACCAT TERM 281 305264 - 305222 - f 100 -22.2 -5.10656 | opp_overlap 305219 305222 ACGAAAACAAGAAAA GCGAGAGTCTGTCAGGTCCA ATC CGAACCTGACAGACTCTAGC TTCTTTTTTGAAAAC TERM 282 305222 - 305264 + F 100 -19.3 -4.61482 | opp_overlap 305222, overlap 305219 ACGAAAACAAGAAAA GCGAGAGTCTGTCAGGTCC AATCC GAACCTGACAGACTCTAGC TTCTTTTTTGAAAAC xylR 305336 - 306475 + | transcriptional regulator ROK family Avi_5304 306472 - 307239 + | ABC transporter nucleotide binding/ATPase protein Avi_5305 307276 - 308316 + | ABC transporter, binding protein TERM 283 308328 - 308349 + F 100 -17.3 -3.80893 | GTGAACGGCCTTCAT TCCGGGGCC TGAT GGCCCCGGA TTTCCCTTCTCCAAT rbsC 308369 - 309373 + | ABC transporter membrane spanning protein (ribose) Avi_5308 309370 - 310140 + | dehydrogenase Avi_5309 310734 - 310237 - | Transcriptional regulator Avi_5310 310912 - 311457 + | flavoprotein oxidoreductase Avi_5311 311704 - 312987 + | indole dioxygenase Avi_5313 313060 - 314382 + | MFS permease Avi_5314 314409 - 315788 + | Carbohydrate-selective porin Avi_5315 315851 - 316270 + | hypothetical protein attY 316343 - 316933 + | glutathione S-transferase Avi_5318 316946 - 317845 + | oxidoreductase TERM 284 317929 - 317970 + F 74 -7.6 -4.09243 | gap 1, overlap 317928 317926 AGTTCGTATTCCGCT CTT-GAATATCTCAAGGCT TTGAT AGATTTGAGATATTCGAAG TTTTCCCAGGGTCTG Avi_5319 318061 - 318951 + | hypothetical protein TERM 285 319230 - 319189 - g 80 -5.1 -4.87665 | opp_overlap 319194 GCCGATCCACAAAAA TTCCTGGCCATCGGCATGA ATTA TCAGGCCCATGCCGAAGAA GCGGCTGCGGCGGGT Avi_5320 318967 - 319818 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 286 319952 - 319973 + F 86 -6.6 -4.96848 | overlap 319943 ATGCCTTCTTCAAGG CGAGGATG CGTTGA CATCTTCG TTTTTGTATGGGGAG Avi_5321 319994 - 321124 + | dehydrogenase Avi_5322 322455 - 321142 - | glycosylase TERM 287 321698 - 321683 - G 72 -5.4 -4.51196 | opp_overlap 321674, overlap 321685 GTGAAACTCAGAAAA TCCTGG GTTT CCAGAA GCTCCGAGCGGATCG Avi_5324 324770 - 322491 - | glycosyltransferase TERM 288 322592 - 322602 + g 78 -8.2 -4.43477 | opp_overlap 322578, overlap 322584 AGCAGAGCACGGATT CCGC TCC GCGG TTTTCGTTGGCTCGA Avi_5325 325237 - 324890 - | hypothetical protein TERM 289 325508 - 325526 + r 76 -7.4 -4.15044 | opp_overlap 325504, overlap 325504 CTCGAAAAGACTGTC GGAAGACA TGT TGTCCTCC TTTATTGGGGCCAGG TERM 290 325696 - 325728 + r 100 -17.2 -4.07568 | gap 1, overlap 325698 TAACCGTTTCTCGCT TG-GCGTAACCGCTG ACAT CAGCGGTTACGCTCA TTTTGGGAGCGGAGA TERM 291 325698 - 325725 + r 100 -20 -3.08032 | overlap 325696 ACCGTTTCTCGCTTG GCGTAACCGCTG ACAT CAGCGGTTACGC TCATTTTGGGAGCGG catE 327915 - 325759 - | catalase C TERM 292 328028 - 328002 - R 100 -15.2 -3.31322 | opp_overlap 328002 CGCAACCGGTCACAA TGCGACGCGG ACATCTG CCGCGTCGCA TTCCGTCACCATCAG TERM 293 328002 - 328028 + r 95 -15.2 -3.06183 | opp_overlap 328002 CGCAACCGGTCACAA TGCGACGCGG ACATCTG CCGCGTCGCA TTCCGTCACCATCAG Avi_5327 329682 - 328078 - | phosphate transporter TERM 294 328697 - 328707 + g 71 -6.8 -4.2349 | overlap 328683 328695 GTCTTGACGGCATCC GCCA CGG TGGC TTTTGCATCTGCGAC TERM 295 330064 - 330017 - H 83 -12.1 -3.28712 | GTTTGGCTGTCATAA TGCCGCCCCATTACACGCTCC GTCGAA GGAGCGCATAATGATGCAACA TTCTCTAAAACTGGC TERM 296 330347 - 330370 + G 75 -8.8 -3.97368 | gap 1, opp_overlap 330331 330347 330346 330344, overlap 330350 CGTGCGGCAGAACAT CGCCACA-CCG CTG CGGATGCGGCG TTTGTCGCTTGCGGG Avi_5328 330054 - 331229 + | ABC transporter nucleotide binding/ATPase protein TERM 297 331323 - 331334 + G 76 -7.2 -4.44797 | overlap 331305 GTGGTCTGTTGTTTG CGGC CCCG GCCG TTTTGCTGTTGCTGG TERM 298 331957 - 332014 + G 84 -12.8 -3.72632 | gap 1, opp_overlap 331990, overlap 331960 332003 ATCGATCTCGGCTTT CAAGGTTTTCGAGACGGTGGCGGTACT GACCA AGGGCCGGT-CCGGCTCGGAAACCTTG TTGTTCGATCTCTAT TERM 299 331960 - 332011 + G 75 -8.7 -3.98378 | gap 1, opp_overlap 331990, overlap 331957 332003 GATCTCGGCTTTCAA GGTTTTCGAGACGGTGGCGGTACT GACCA AGGGCCGGT-CCGGCTCGGAAACC TTGTTGTTCGATCTC Avi_5329 331226 - 332152 + | ABC transporter membrane spanning protein TERM 300 332340 - 332376 + G 75 -10.1 -3.67634 | opp_overlap 332324, overlap 332338 332342 GGCCGCCAGTCAGGT GCCGATGGCCCGCTTCA TGC TGAATGGGGTCATCGTC TGTTTTGGCATCCTG TERM 301 332342 - 332374 + G 73 -11.3 -3.41366 | opp_overlap 332324, overlap 332340 332338 CCGCCAGTCAGGTGC CGATGGCCCGCTTCA TGC TGAATGGGGTCATCG TCTGTTTTGGCATCC TERM 302 332617 - 332669 + G 87 -9.8 -4.58395 | gap 1, opp_overlap 332620, overlap 332620 ATCTTCCTGTTCCAC CAATCCTTCCGCAGCTATCCCGATG AAAT CATCGAGGCGGC-GCGGATGGATGG TTTTTCCGAGATGGA Avi_5330 332149 - 332973 + | ABC transporter TERM 303 333264 - 333284 + G 72 -5.3 -4.55697 | overlap 333266 333267 TCCTGCGCGCTGCCG TGACCGGCA ATC TGCCGGATG TTTATTTCTCAGGCT Avi_5331 333017 - 334312 + | ABC transporter substrate binding protein (sugar) TERM 304 334368 - 334395 + T 100 -13.4 -4.07568 | opp_overlap 334362, overlap 334369 CTTTGAAGACCGGCA AGGCTGCGGGGA ATGT TCTCCGCAGCCA TTTTCCAGAAAGACG TERM 305 334369 - 334394 + T 100 -16.9 -3.04398 | opp_overlap 334362, overlap 334368 TTTGAAGACCGGCAA GGCTGCGGGGA ATGT TCTCCGCAGCC ATTTTCCAGAAAGAC TERM 306 335333 - 335292 - T 100 -21.7 -3.54424 | opp_overlap 335293 335300, overlap 335293 335300 TTGCATTTTTCTAAA TCCAAAAACCGCACCGCTG TCTC CAGCGGTGCGGTTTCCGGT ATCGTCTTATCGCTG TERM 307 335332 - 335293 - T 100 -25.2 -2.72511 | opp_overlap 335293 335300, overlap 335292 335300 TGCATTTTTCTAAAT CCAAAAACCGCACCGCTG TCTC CAGCGGTGCGGTTTCCGG TATCGTCTTATCGCT TERM 308 335293 - 335332 + T 100 -20.8 -2.94993 | opp_overlap 335292 335293 335300, overlap 335300 TGCATTTTTCTAAAT CCAAAAACCGCACCGCTG TCTC CAGCGGTGCGGTTTCCGG TATCGTCTTATCGCT TERM 309 335325 - 335300 - T 100 -20.5 -4.81249 | opp_overlap 335300 335293, overlap 335293 335292 TTCTAAATCCAAAAA CCGCACCGCTG TCTC CAGCGGTGCGG TTTCCGGTATCGTCT TERM 310 335300 - 335325 + T 100 -20.5 -3.64866 | opp_overlap 335293 335292 335300, overlap 335293 TTCTAAATCCAAAAA CCGCACCGCTG TCTC CAGCGGTGCGG TTTCCGGTATCGTCT vdh 336872 - 335340 - | vanillin: NAD oxidoreductase TERM 311 335405 - 335418 + g 74 -2.3 -4.96848 | opp_overlap 335365 335404, overlap 335406 ATTTGCCATTAAAGC GTCCG AGAC CGGAG TTTTTCTCTCCACCA TERM 312 336289 - 336260 - G 71 -7.7 -4.08767 | TCGACGGTTTCAAAA CGACGGCGTTTCC AAGC GCAAGCGCCGGCG CGACAGAGCGGTTCG Avi_5336 338479 - 337043 - | glucokinase Avi_5337 339408 - 338494 - | aldolase TERM 313 340132 - 340147 + G 76 -6.8 -4.42386 | AGGCCGCCGATCAGT TGGGTG GCAG CGCCCA TTTTCTACATGCGCC Avi_5338 339684 - 340625 + | transcriptional regulator TERM 314 340630 - 340619 - f 71 -3 -4.83759 | AACGAAAGCGAAAAA GAAA TAAG TTTC TGAAAAAAATTTCTT TERM 315 341078 - 341063 - g 78 -6 -4.57569 | overlap 341065 GCAGCCGTTGAAAAA GGCCGC GGAT GCGGGC ATTCCAATGATCACG TERM 316 341704 - 341680 - g 70 -3.6 -4.71426 | gap 2, opp_overlap 341694 CTGTCATCAACAAAA GCAACGTGACTG ATC CAG-C-CGTCGC TCGGTTCATCTACGC rbsB 340737 - 341726 + | ABC transporter substrate binding protein (ribose) rbsC 341848 - 342894 + | ABC transporter membrane spanning protein (ribose) Avi_5342 342884 - 343633 + | ABC transporter cbr 343674 - 344402 + | carbonyl reductase dapE 345795 - 344389 - | succinyl-diaminopimelate desuccinylase TERM 317 344551 - 344533 - G 74 -13.2 -2.96249 | overlap 344527 344530 GCCTACTAACAAGGA GTCCATGC CGA GCATGGAC TGAAAGCTGCCGACA TERM 318 345522 - 345499 - G 71 -11 -3.28712 | GTCGTTTTGCCATAA GTTCAGCGGG TCCA CCGGCTGAAC ATCGTAATGGCCGTA mdeA 347010 - 345838 - | methionine gamma-lyase TERM 319 346128 - 346099 - G 74 -6.3 -4.49337 | gap 1, overlap 346101 346102 GAAGATGAAGGAAAA CAGCCCGGACGTGC CAT GCAGGCCCGG-CGG CAAGCCATTGTTCAG Avi_5347 347735 - 347007 - | transcriptional regulator GntR family TERM 320 347931 - 347919 - H 85 -3.3 -5.4251 | CGCACACATAAAAAA TGAGG GTG CCGCA AAGGCGCGAACAAAC TERM 321 348294 - 348272 - g 71 -10.6 -3.60792 | CGTTCAAGCTGGAAA GCTGGAATCG CGG CGATTCCATC ACCATGACCCGCAAC dppA 347965 - 349584 + | ABC transporter substrate binding protein (dipeptide) TERM 322 349623 - 349648 + F 79 -4.5 -4.88067 | overlap 349602 349627 GCTAGGCGTAAATGT CGGGCCCGGCG TGTC TGGCGGGGTCG TTTTTATACGTGGCT TERM 323 349825 - 349784 - f 72 -8.7 -3.73107 | gap 1, overlap 349791 349795 CGAGCAAAGGGTAAA CTCCAAAGCGATCTCCCCCC TTG AGGGGGAGAT-GCCCGGCAG GGCAGAGGGGGGTAT TERM 324 349818 - 349791 - f 91 -12.8 -3.71917 | gap 1, overlap 349784 349795 AGGGTAAACTCCAAA GCGATCTCCCCCC TTG AGGGGGAGAT-GC CCGGCAGGGCAGAGG TERM 325 349815 - 349795 - f 81 -13.3 -2.6704 | overlap 349791 349784 TAAACTCCAAAGCGA TCTCCCCCC TTG AGGGGGAGA TGCCCGGCAGGGCAG TERM 326 350064 - 350041 - g 70 -2.2 -4.83169 | opp_overlap 350042, overlap 350042 ATGCTGGGAGAAAAA GCCACCGCCG AGAC CTGCGCTGGT TTCATCACGCGCTAC TERM 327 350095 - 350106 + G 86 -5.8 -5.07011 | GGCTTCGATAAGCCG CTGC CAAC GCAG TTTTTCATTTATATG TERM 328 350327 - 350344 + G 71 -11.3 -3.25102 | overlap 350296 350319 350325 350334 350335 TGATTGTTGCCAATG CCGGCAT TTCC ATGCCGG TGTTCTGGCTGGGGT TERM 329 350412 - 350428 + G 71 -10.8 -3.55071 | overlap 350417 CACGCCCTTCTGGCT GCCGCC ATCCG GGCGGC TTTCCGCCGGTGTCA dppB 349915 - 350994 + | ABC transporter membrane spanning protein (dipeptide) dppC 351003 - 351956 + | ABC transporter membrane spanning protein (dipeptide) Avi_5352 351928 - 352980 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5354 352977 - 353951 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5355 353972 - 355117 + | proline dipeptidase Avi_5356 355234 - 355950 + | transcriptional regulator GntR family TERM 330 357043 - 357010 - g 88 -10.3 -4.4267 | gap 1, opp_overlap 357036, overlap 357011 357012 GTCGAAAAGGCAAAA GC-CCTGGTCAAAGCC GCT GGATTTGACCGGGTGC CGATTGAGTTGCAGG TERM 331 357040 - 357011 - g 71 -11.5 -3.24879 | gap 1, opp_overlap 357036, overlap 357010 357012 TCGAAAAGGCAAAAG CCCTGGTCAAAGCC GCT GGATTTGACC-GGG TGCCGATTGAGTTGC dppA 356002 - 357510 + | ABC transporter substrate binding protein (dipeptide) TERM 332 357548 - 357588 + F 71 -10.5 -2.93723 | gap 1, opp_overlap 357547 357551, overlap 357543 ATCCTGTCACGGAAG CGATCTTTGTCAGGCGGC AGGTCC GCCGCCTGACACAAA-CG TCTCATTCATCCGGA TERM 333 357586 - 357551 - f 90 -14.8 -2.54896 | opp_overlap 357548 357543, overlap 357547 CTGTCACGGAAGCGA TCTTTGTCAGGCGGCA GGTC CGCCGCCTGACACAAA CGTCTCATTCATCCG dppB 357611 - 358558 + | ABC transporter membrane spanning protein (dipeptide) dppC 358555 - 359424 + | ABC transporter membrane spanning protein (dipeptide) TERM 334 359918 - 359901 - g 70 -4.1 -4.60487 | TATTATGCCGAAAAA GGCCA TCCGGTTC TGGCC AGAGTTTCGGCCACC TERM 335 360687 - 360671 - g 74 -7.9 -4.1899 | opp_overlap 360664 GCATTTGAGCGAAAA GCGCGGT GAT ACCGTGC ATATCGATGTGATCG ggt 359472 - 361256 + | gamma-glutamyltransferase TERM 336 361410 - 361430 + G 71 -11.1 -3.28924 | opp_overlap 361422 TGTCATTTGATGTGA TGGCGGGTG AAA CGCTCGCCA TTGTCGGGGAGAGTG moaD 361301 - 363136 + | ABC transporter nucleotide binding/ATPase protein gsp 364318 - 363164 - | glutathionylspermidine synthetase TERM 337 364096 - 364109 + g 74 -8.1 -4.10657 | overlap 364090 GGATGGCTAGCCGGT CGAGG ACCT CCTCG TTTTCAACGATGTCA Avi_5364 364922 - 364320 - | hypothetical protein Avi_5365 365334 - 364933 - | hypothetical protein TERM 338 365009 - 365021 + g 78 -7.7 -4.4648 | opp_overlap 365009 AGGCCTGCGGCAATA TCACC GGC GGTGA TTTTCTCATGCAGAT Avi_5366 366021 - 365362 - | hypothetical protein Avi_5367 366301 - 366747 + | hypothetical protein Avi_5368 366720 - 367481 + | hypothetical protein TERM 339 367533 - 367566 + T 100 -13.2 -4.43879 | opp_overlap 367524 367534, overlap 367534 AGAGAACCCGAAACA ATCCGGGTGGAACG CTGATA TGTTCCACCCGGAA TTTTAATTAAATAAT TERM 340 367565 - 367534 - T 100 -16 -3.97689 | opp_overlap 367533 367534, overlap 367524 GAGAACCCGAAACAA TCCGGGTGGAAC GCTGATAT GTTCCACCCGGA ATTTTAATTAAATAA TERM 341 367534 - 367565 + T 100 -16.7 -3.25604 | opp_overlap 367524 367534, overlap 367533 GAGAACCCGAAACAA TCCGGGTGGAACG CTGATA TGTTCCACCCGGA ATTTTAATTAAATAA Avi_5370 368919 - 367573 - | dicarboxylate carrier protein fadD 370562 - 369048 - | long-chain-fatty-acid-CoA-ligase TERM 342 369424 - 369463 + g 72 -9.2 -3.64716 | opp_overlap 369396, overlap 369423 ATCTTGCCGAGATCG CCGCTGATGAAGAAACCG TCGG CGGTAAATTCAGCAGCGG TCTTTTCAGGCATCC Avi_5372 372056 - 370659 - | malonyl-CoA decarboxylase TERM 343 371230 - 371218 - G 74 -6.3 -4.46212 | TGCTTGATGAGAAAA TTTCC GAA GGAAA TGCCGCGAAGCCCGT TERM 344 372077 - 372101 + H 75 -4.8 -4.85396 | overlap 372078 ATTCCTCCGATCATC AGGACGGCGC CCCCC GCGCTGCCCC TTTTATTATCATTGT Avi_5373 372224 - 372874 + | transcriptional regulator GntR family TERM 345 374378 - 374400 + G 70 -4 -4.56597 | overlap 374379 TGGCCTATGAAAACG GCGAGCCAGC GGT GCTGCTTGGC TTTTTACAGGAAGAG TERM 346 374618 - 374638 + G 71 -10.3 -3.63569 | TGCAAAGCGGCAATT GCTGGGGCG ATG CGACCCGGC TTCTTGCGCCGTTGC Avi_5374 372952 - 375291 + | two component response regulator TERM 347 375891 - 375909 + G 72 -6.6 -4.3453 | ACTGTTTTCCATGGT CGGCGTCA CGG TGCCGTCG TTTCTGTTTGCCATT TERM 348 376003 - 376017 + G 81 -8.5 -4.28323 | overlap 376009 GATCTTCACGCCCCC GCCGG GCCAA CCGGC TTTCTGTTGGTTGAT Avi_5375 375466 - 376494 + | ABC transporter membrane spanning protein (dipeptide) TERM 349 377214 - 377234 + G 75 -5.3 -4.56597 | overlap 377215 CCAGACCTCGGCTCG ATGGTGGCC GAT GGCCGTCAG TTTTTGCCGGAAAAA Avi_5376 376491 - 377351 + | ABC transporter membrane spanning protein (dipeptide) Avi_5377 377354 - 379021 + | ABC transporter nucleotide binding/ATPase protein (dipeptide) TERM 350 380478 - 380468 - g 70 -2.4 -4.77157 | overlap 380469 GGAAGCCACGAAAAA CGCC GTT GCCG CAGGCGCTGATCCCA Avi_5378 379047 - 380600 + | hydantoinase TERM 351 381367 - 381343 - g 75 -5.6 -4.60041 | overlap 381349 AGCCATCTGCAAAAA GGAGAACGGC AAAAA GCTGTTCACC GGTAAAATCAGCGAT Avi_5379 380597 - 381721 + | hypothetical protein Avi_5380 381823 - 382800 + | hypothetical protein TERM 352 383660 - 383670 + G 80 -2.4 -5.27938 | opp_overlap 383635 383632 GTCCAGACCACACCA ACGG CCA CCGG TTTTTATTTGAAACT Avi_5381 382841 - 384415 + | ABC transporter substrate binding protein (dipeptide) Avi_5382 384910 - 384434 - | two-component system regulatory protein Avi_5383 387261 - 384907 - | Signal transduction histidine kinase TERM 353 385682 - 385667 - G 83 -4.6 -5.03715 | overlap 385669 AGCACTTGCAAAAAA CGGCGA CGAT CCACCG CAACAATAGTTTGGC narL 387911 - 387261 - | two component response regulator TERM 354 387563 - 387537 - G 72 -5 -4.65895 | overlap 387538 TCCGGTATCGAAAAA TTCCTGACCGTC CAG AACGGCCCGGAT CATCCGCAACAATGT Avi_5386 389003 - 387918 - | two component sensor kinase TERM 355 388599 - 388622 + g 81 -13.2 -3.61902 | gap 1, opp_overlap 388598 GCGCTCGGCAAGCAT CAGGAGCAGGG CTT CCC-GCTCCTG TTCTCTGTCATCGGC Avi_5387 389202 - 389666 + | hypothetical signal peptide protein TERM 356 389670 - 389725 + T 72 -7.9 -3.97834 | gap 3, opp_overlap 389668 389673, overlap 389670 389672 389673 CGCACGTCGTAAAGG CA-A-GTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGACATCTG TTTATGCTGCGGTTC TERM 357 389670 - 389723 + T 77 -9.7 -3.57674 | gap 1, opp_overlap 389668 389673, overlap 389670 389672 389673 CGCACGTCGTAAAGG CAAGTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGACATC TGTTTATGCTGCGGT TERM 358 389672 - 389721 + T 83 -12.3 -3.36228 | gap 1, opp_overlap 389668 389673, overlap 389670 389670 389673 CACGTCGTAAAGGCA AGTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGACA TCTGTTTATGCTGCG TERM 359 389720 - 389673 - T 100 -15.8 -3.27704 | gap 1, opp_overlap 389672 389670 389670 389673, overlap 389668 ACGTCGTAAAGGCAA GTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGAC ATCTGTTTATGCTGC TERM 360 389673 - 389720 + T 95 -15.8 -2.61255 | gap 1, opp_overlap 389673 389668, overlap 389672 389670 389670 ACGTCGTAAAGGCAA GTTATGGACATGTCGCCGCGC TGGGAAC GCACGGCGACATGT-CATGAC ATCTGTTTATGCTGC Avi_5388 391001 - 389727 - | glucose/galactose transporter TERM 361 391298 - 391315 + r 88 -8.3 -4.67354 | overlap 391295 GTGCAATTTGAGGGA CCGAGCC TTTC GGCCCGG TTTTCTCTATGTGTT TERM 362 391372 - 391418 + r 72 -10.1 -3.30243 | opp_overlap 391355 391370 391372 391373, overlap 391376 391377 GAAGATGTGTAAACA TCCTCCAGCATCGTGCGGT TTCCAGTTT GCCGCACGATGCTGGTGCC TTGTGACGCCTGGGT TERM 363 391417 - 391373 - R 81 -12.9 -2.62439 | opp_overlap 391372 391376 391377, overlap 391355 391372 391370 AAGATGTGTAAACAT CCTCCAGCATCGTGCGG TTTCCAGTTTG CCGCACGATGCTGGTGC CTTGTGACGCCTGGG TERM 364 391376 - 391414 + r 100 -18.3 -2.5955 | opp_overlap 391355 391373 391372 391370, overlap 391372 391377 ATGTGTAAACATCCT CCAGCATCGTGCGGT TTCCAGTTT GCCGCACGATGCTGG TGCCTTGTGACGCCT Avi_5390 392470 - 391433 - | ABC transporter nucleotide binding/ATPase protein cysW 393354 - 392485 - | sulfate ABC transporter permease protein CysW cysT 394198 - 393341 - | sulfate ABC transporter permease protein CysT TERM 365 394157 - 394121 - G 75 -10.8 -3.71687 | gap 1, overlap 394112 GTAAAACACCGTAAA GCCGAACG-TCAACCCG AATC CGGGAAGAACGCTCGGC TGACGGAATTGCCAC Avi_5393 395242 - 394226 - | ABC transporter substrate binding protein (sulfate) TERM 366 394899 - 394909 + g 71 -6.8 -4.20806 | overlap 394892 GTATAGGGCGAACTG CTGC TTG GCAG TTTGGTTTTCCAGTC thuR 396473 - 395436 - | transcriptional regulator LacI family Avi_5395 396927 - 397967 + | hypothetical protein Avi_5396 397974 - 398912 + | hypothetical protein TERM 367 399722 - 399690 - g 72 -4.8 -4.68994 | ATCATGACCGAAAAA CTGGCCTCGC CGGATACGCTAAC GCGCGGCCAG TGGGATTCGACCGGC Avi_5398 399009 - 400220 + | ABC transporter substrate binding protein (sugar) thuF 400358 - 401260 + | ABC transporter membrane spanning protein (sugar) Avi_5400 401257 - 402084 + | ABC transporter membrane spanning protein (sugar) Avi_5401 402081 - 403181 + | ABC transporter nucleotide binding/ATPase protein TERM 368 403198 - 403218 + F 70 -4 -4.61482 | AATTTTCCGCTTGTT GTGTTCTA TTTAT TAGAGCGC TTATTTTTTGACCGA TERM 369 403806 - 403835 + G 83 -13.7 -3.55444 | gap 1 GGCTGGATGTGACGA TTGCCTCGGGTCGA GGC TCGAC-CGAGGCGA TTTCGAAACTGGCGG Avi_5403 403631 - 404620 + | hypothetical protein Avi_5404 404626 - 405399 + | ABC transporter nucleotide binding/ATPase protein Avi_5406 405455 - 406210 + | ABC transporter membrane spanning protein Avi_5408 406328 - 407311 + | flavonol synthase/dioxygenase TERM 370 407384 - 407356 - f 100 -16.8 -3.05022 | gap 1 GTGGCCAGACAGACA GCG-GACAGGGGC AACC GCCCCTGTCGCGC GACGGGAACGCTGAT Avi_5409 407398 - 408300 + | LysR family protein TERM 371 409401 - 409436 + G 81 -3.8 -5.1287 | overlap 409386 409400 409405 CGCGCCGCCGGTATC CGCGTCGCGGTTGCTG GTGA CAATTGCCGCGATCCG TTTTTTGCCTATGGC Avi_5410 408372 - 409754 + | cytosine deaminase Avi_5411 412758 - 409732 - | beta-galactosidase TERM 372 413298 - 413272 - g 80 -4.5 -5.02074 | gap 1, overlap 413275 413288 GGATCTGGCAAAAAA GAC-TGGCCTAT CGAA ACAGACCATGTC CGAGGTCATACGCAC TERM 373 413395 - 413406 + G 76 -7.2 -4.48072 | GACCTATGAAGTCGC CCCG GATG CGGG TTTTGTCATCGGTAT TERM 374 414058 - 414093 + G 72 -8.8 -3.83102 | opp_overlap 414078 GGGCGACGCAAAGGC GCTGGCAACCGTGCAG GAAA CAGCGCGGCTGGCGGC TTTGCTGGTGGTTTC Avi_5412 413162 - 414352 + | transcriptional regulator ROK family Avi_5413 415171 - 414368 - | transporter formate/nitrite transporter family TERM 375 414665 - 414647 - G 86 -12.4 -4.07306 | overlap 414635 AGAGGCAATCAGAAA GCCTGCCG GGG CGGCAAGC AGCAATGTCGTTGCA TERM 376 415336 - 415354 + r 74 -8 -4.10161 | ACCCATTCGGTTCCA GCGGCAGC TAT GTCGCCGC TTTTCCGCGCTGATC Avi_5414 416759 - 415368 - | chlorohydrolase family protein Avi_5416 417603 - 416752 - | vanillate O-demethylase oxygenase subunit Avi_5417 418562 - 417627 - | ABC transporter membrane spanning protein (sugar/ribonucleotide) Avi_5418 419620 - 418574 - | ABC transporter membrane spanning protein (sugar) Avi_5419 421208 - 419613 - | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 377 421239 - 421263 + r 76 -10.7 -3.3487 | gap 1, overlap 421237 421235 421240 421253 ATGAGAGACTGCGAA G-GGCCGGGC ATCATC GCCCGGCCTC TATATTTGGTTGGGT TERM 378 421240 - 421261 + r 95 -14.4 -3.23456 | overlap 421239 421237 421235 421253 TGAGAGACTGCGAAG GGCCGGGC ATCATC GCCCGGCC TCTATATTTGGTTGG Avi_5420 422394 - 421282 - | lipoprotein TERM 379 421642 - 421659 + g 70 -4 -4.57073 | GTCGGTGTTCCACAT CGCAGC CCAGAC GCCGCG TTTTTCGGCGACCTG TERM 380 422153 - 422169 + g 75 -3.7 -4.8622 | TCGACCTCGAGGATC TTCTTCA GCT TGGGGAA TTTTTCCTTGACGGC TERM 381 422699 - 422661 - H 95 -6 -5.45726 | opp_overlap 422669, overlap 422663 CATAGTCGAAAAAAA TCGCTCAAGATGATGCGT GAA AGGCAACATCTTGACTGA AAAAAATGCTTGTAA TERM 382 422990 - 423000 + H 77 -8.2 -4.08706 | opp_overlap 422990, overlap 422979 GGCTTGCAGCGAAAA CCGC GTT GCGG TTTGTGTCATCGGGC TERM 383 423000 - 422990 - H 78 -8.2 -4.18018 | opp_overlap 422979 422990 GGCTTGCAGCGAAAA CCGC GTT GCGG TTTGTGTCATCGGGC Avi_5422 423154 - 423846 + | oxidoreductase protein Avi_5423 423846 - 424478 + | Gst12 glutathione-S-transferase ade 424533 - 426332 + | adenine deaminase TERM 384 426818 - 426851 + G 100 -16.1 -4.11216 | gap 1 GTGCCGCGTACCGTG CGCCGCATTGCCAGCG TGT CGCTGCCAAT-CGGCG TTTTGGCCCTGCCGG TERM 385 427135 - 427162 + G 71 -11.3 -3.26471 | TGTGCCGCTTTCCGA CAGCCGCTTGC CGAACC GCAAGCTGCTG TTGCTGTCGCGCTCC Avi_5425 426332 - 427282 + | Transcriptional regulator Avi_5426 427376 - 427876 + | Sulfopyruvate decarboxylase alpha subunit Avi_5427 427873 - 428481 + | thiamine pyrophosphate-requiring enzyme TERM 386 429833 - 429874 + F 72 -5.1 -4.49958 | gap 1, opp_overlap 429828, overlap 429829 429835 AGACACAAAACTGTC GAGGGACGGCC-TTCGGGAT TTC ATCCGTAACGGCTGTTCCAC TTTCTTTCATCCCGT TERM 387 430200 - 430178 - g 83 -7.6 -4.62783 | opp_overlap 430178, overlap 430180 CATGGATGCGAAAAA CAGCGTCATC TCT GATGGCGCGG TTGCTATTGAGGACG TERM 388 430198 - 430180 - g 72 -8.8 -3.92746 | opp_overlap 430178, overlap 430178 TGGATGCGAAAAACA GCGTCATC TCT GATGGCGC GGTTGCTATTGAGGA Avi_5431 430113 - 431513 + | chlorohydrolase TERM 389 431826 - 431859 + G 72 -6.7 -4.30014 | overlap 431812 431811 431809 TGCGGGCATCGGGCC TGCGTGTTGTCGAGA ATTT TCTCGATATGGCGCA TTTTCCCTTCGTGCA Avi_5432 431510 - 432376 + | phenylpropionate dioxygenase TERM 390 432963 - 432981 + G 77 -10.2 -3.83026 | opp_overlap 432933 TCGGGCGGGGCAGAG CCGTGTCG ATG CGGCGCGG TTTGCTGTCGGCGGC Avi_5433 432376 - 435522 + | dehydrogenase xdhA 435519 - 436004 + | xanthine dehydrogenase TERM 391 436070 - 436041 - g 72 -5 -4.57073 | gap 1, opp_overlap 436068, overlap 436044 TATCGGCCCGAAAAA CGACGGCGCCAAA GCCTT TCTGGC-CCACCG CCGTAAGCAGATCCT dhaS 436006 - 437520 + | aldehyde dehydrogenase pcaI 437682 - 438389 + | 3-oxoadipate CoA-transferase subunit A TERM 392 438541 - 438559 + G 71 -10.2 -3.53012 | opp_overlap 438516 CGAAAACGGAATGCT GGGGATCG GGC CGTTCCCC TTTGAGGGCGAAGAG pcaJ 438389 - 439036 + | 3-oxoadipate CoA-transferase subunit B TERM 393 439065 - 439098 + F 100 -25.5 -5.08088 | opp_overlap 439065 GCTAGTCATGCCAAA GCCCCTACAGCGTCT GATC AGACGCTGTAGGGGC TTTTTATTGGGCATT TERM 394 439098 - 439065 - f 100 -25.5 -3.61178 | opp_overlap 439065 GCTAGTCATGCCAAA GCCCCTACAGCGTCT GATC AGACGCTGTAGGGGC TTTTTATTGGGCATT TERM 395 439143 - 439155 + F 81 -6.3 -4.77157 | opp_overlap 439143, overlap 439135 AGATTGCTCATAAAA TTGGT CCT ACCAA TTTTTGATGAATTGG TERM 396 439155 - 439143 - f 72 -6.3 -4.38154 | opp_overlap 439135 439143 AGATTGCTCATAAAA TTGGT CCT ACCAA TTTTTGATGAATTGG TERM 397 439677 - 439687 + G 74 -8.2 -4.13945 | CAGAGCCAGGCGCGC GCCG ATG CGGC TTTTCACATGGCAAT Avi_5438 439260 - 440015 + | transcriptional regulator GntR family TERM 398 440685 - 440655 - g 85 -9.6 -4.4648 | opp_overlap 440659 440663 ATCGCCAGCAGAAAA CCAATCTGGCCGAC TAT GTCGGCTGGCTTGG TGAAAATTTCGACCC lldA 440012 - 441151 + | L-lactate dehydrogenase Avi_5440 441497 - 442336 + | hypothetical protein Avi_5441 442385 - 443236 + | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Avi_5443 443429 - 445072 + | 3-(3-hydroxyphenyl)propionate hydroxylase; 3-(3-hydroxy-phenyl)propionate hydroxylase FAD/NAD(P)-binding TERM 399 445338 - 445324 - f 74 -5.8 -4.55491 | opp_overlap 445326 TATTTAATTATAAAA TATCAT AAA ATGATA ATTAAAATTTTAAAT livJ 445697 - 446917 + | ABC transporter substrate binding protein (branched amino acid) livH 447089 - 447946 + | ABC transporter membrane spanning protein Avi_5446 447956 - 448954 + | ABC transporter membrane spanning protein (branched chain amino acid) Avi_5447 448951 - 449694 + | ABC transporter nucleotide binding/ATPase protein TERM 400 449941 - 449961 + G 83 -7.6 -4.59853 | gap 1, overlap 449944 GGCTTGGCATAGGCT TCGTGCCGC AGGA GCGGCA-GA TTTTTGCCACGTTGA TERM 401 450085 - 450074 - g 72 -4.4 -4.59853 | opp_overlap 450075, overlap 450075 CGAACGGCGGAAAAA TGGT GGCA ACCA GCTTTCCGGTGGAGA livF 449691 - 450398 + | ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) hppD 452307 - 450460 - | 4-hydroxyphenylpyruvate dioxygenase Avi_5451 452505 - 453230 + | transcriptional regulator TetR family aroQ 453648 - 453205 - | 3-dehydroquinate dehydratase aroE 454514 - 453645 - | shikimate 5-dehydrogenase Avi_5456 455344 - 454586 - | ABC transporter nucleotide binding/ATPase protein (amino acid) TERM 402 455208 - 455255 + g 90 -17.1 -3.42257 | gap 1, opp_overlap 455225 GTCGATTTTCCGGAG CCGGACGGCCCGCAAAGGACGA TTTTT TCG-CCTTTGCGGACTGTCAGG TTGATGTCTTTCAGC Avi_5457 456197 - 455358 - | ABC transporter substrate binding protein (amino acid) TERM 403 455960 - 455943 - G 72 -8.4 -3.87815 | opp_overlap 455942 GGCCAGCGGCACAAA CTCGGC CTTGAC GCCGAG ATAGTCTGCATAGGC TERM 404 456301 - 456351 + r 90 -9.6 -4.51238 | overlap 456333 TGTATTGAGGAAAGC CGGTTTCTACACGTCGTCTGGTAA ACC TTACCGGGCGGCGGCTTGCAGCCG TTTCTCTTTTCTGGC TERM 405 456333 - 456357 + r 72 -6.3 -4.36914 | overlap 456301 CTGGTAAACCTTACC GGGCGGCGGCT TGC AGCCGTTTCTC TTTTCTGGCGCCCCA Avi_5458 456978 - 456328 - | ABC transporter membrane spanning protein (amino acid) TERM 406 456912 - 456886 - G 71 -7.8 -3.98804 | opp_overlap 456900 456903, overlap 456887 456901 GCAAAGGCCAAAGAA TCCGCCGCCGAC AAA GCCGATGGCGGT CAACGCCAGCGTCCA Avi_5459 457657 - 456989 - | ABC transporter membrane spanning protein (amino acid) TERM 407 458057 - 458095 + r 95 -12.6 -4.08692 | opp_overlap 458048 458067, overlap 458061 AATATAGACGCTCAT CTTATACGAAGAGTCATT GAA GATGACTCTTCGTATTCG TTTTGCAACGCCTTC TERM 408 458061 - 458091 + r 100 -16.4 -3.66908 | opp_overlap 458048 458067, overlap 458057 TAGACGCTCATCTTA TACGAAGAGTCATT GAA GATGACTCTTCGTA TTCGTTTTGCAACGC TERM 409 458189 - 458152 - R 77 -12.8 -2.78463 | opp_overlap 458157, overlap 458157 ATCCTTGGTATTATA CGAAAGCCCGACGATG TGTTGG CATCTTCGGGCTTTTG TATGCGGAGAAATTT TERM 410 458157 - 458184 + r 100 -12 -4.52589 | opp_overlap 458152 458157 TGGTATTATACGAAA GCCCGACGATGT GTTG GCATCTTCGGGC TTTTGTATGCGGAGA TERM 411 458184 - 458157 - R 90 -11.3 -3.86202 | opp_overlap 458157, overlap 458152 TGGTATTATACGAAA GCCCGACGATG TGTTGG CATCTTCGGGC TTTTGTATGCGGAGA Avi_5460 459175 - 458285 - | hypothetical protein TERM 412 459048 - 459032 - G 90 -4.4 -5.34857 | overlap 459034 CGAAAGAAAATAAAA TCCCTC AAATG GAGGAA TGGCGCCCGCGTAAA TERM 413 459316 - 459292 - R 73 -9.3 -3.58536 | opp_overlap 459292, overlap 459281 AAACGTATTTTTAAA TACCGCGCATC GTT GATGTGCAGTA TTGATGCCGTTATTG treZ 461528 - 459765 - | malto-oligosyltrehalose trehalohydrolase TERM 414 460233 - 460215 - G 76 -3.1 -4.89393 | opp_overlap 460222, overlap 460216 460221 GAAATCGCAGAAAAA CGGAAAG GGGGT CTTTGCG CCCCATTCCTCTCCC treY 461742 - 464273 + | malto-oligosyltrehalose synthase Avi_5463 464389 - 464820 + | osmotically inducible protein OsmC TERM 415 464843 - 464872 + F 100 -11.4 -4.76171 | CCCTGGGTAGTCTGG GTCCGGTCTGGC TTGAAT GCTAGGCCGGGC TTTTGTGCTTTTTTC TERM 416 465881 - 465843 - g 70 -2.2 -4.74706 | GCCAAGATCGAAAAA CTCGCCGCCCTGCATGGC CGT GGCATCCTGACCGACAAG GAATATCAAGACAAA Avi_5465 464859 - 465923 + | hypothetical protein Avi_5466 466285 - 467784 + | hypothetical protein Avi_5467 468664 - 467837 - | ABC transporter nucleotide binding/ATPase protein (aliphatic sulfonate) Avi_5468 469524 - 468670 - | ABC transporter membrane spanning protein (aliphatic sulphonate) TERM 417 469060 - 469048 - G 79 -6.9 -4.61633 | overlap 469051 ATAGATCGGGAAAAA CACGC CAA GCGCG ACAAGAAAGAGCTTG Avi_5469 470533 - 469565 - | ABC transporter substrate binding protein (aliphatic sulfonate) ssuA 470916 - 471881 + | ABC transporter substrate binding protein (aliphatic sulfonate) TERM 418 472838 - 472852 + G 73 -12.8 -2.84098 | overlap 472835 GGCTGGTGCGGGCAG GGGCCG GTA CGGCCC TCGTTGGTTCGCCGG ssuD 471907 - 473097 + | sulfonate monooxygenase TERM 419 473120 - 473157 + F 100 -9 -5.2189 | opp_overlap 473141, overlap 473121 473127 TAATTGTCGCTCATG CGCCATGCCGCTCCGG ATTAAG CCGGGGCGGTGTTGCC TTTTTTGATGCTTCC TERM 420 473121 - 473156 + F 91 -12.5 -3.72049 | opp_overlap 473141, overlap 473120 473127 AATTGTCGCTCATGC GCCATGCCGCTCCGG ATTAAG CCGGGGCGGTGTTGC CTTTTTTGATGCTTC TERM 421 473127 - 473150 + F 89 -13.1 -3.3244 | opp_overlap 473141, overlap 473121 473120 CGCTCATGCGCCATG CCGCTCCGG ATTAAG CCGGGGCGG TGTTGCCTTTTTTGA Avi_5475 473367 - 473834 + | hypothetical protein TERM 422 473967 - 473933 - T 100 -20.9 -4.2074 | opp_overlap 473933 CGTCGAATACAGAAA TCAGCCTGCCGGATC TGAAT AATCCGGCAGGCTGA TTTTTTGCTGTGGCC TERM 423 473933 - 473967 + T 100 -20.2 -5.21709 | opp_overlap 473933 CGTCGAATACAGAAA TCAGCCTGCCGGAT CTGAATA ATCCGGCAGGCTGA TTTTTTGCTGTGGCC Avi_5477 474537 - 473989 - | hypothetical protein TERM 424 474727 - 474769 + r 72 -8.4 -3.80094 | opp_overlap 474727 474726 TAATGTGCTATAAAC GGGAGAGCCTATCAGATTTG GAC TGAACCAGATGGGCTCTCAC TTCTCTTGGTTTCAG Avi_5479 476074 - 474902 - | FMNH2-dependent monooxygenase protein TERM 425 475212 - 475227 + g 87 -8.2 -4.7497 | overlap 475205 475213 AATCGCAGGGCGGCA TCGGCG ATGG CGCCGG TTTTTGATGGGTCAA TERM 426 476291 - 476276 - R 70 -6.2 -4.1552 | opp_overlap 476275 CAGGTGGGCAATAAA CGATAT TATC ATATCG ATAGATTTTGTATAG Avi_5481 477259 - 476348 - | transcriptional regulator LysR family TERM 427 477346 - 477325 - H 70 -3.7 -4.71828 | gap 1 AGTGTAGTAAGAAAA CGCCAGCTTG TTC CAAT-TGGCG AATAACAATAGATTT TERM 428 478032 - 478048 + G 95 -13.7 -4.19735 | CTCTGTTCGCGCCTT GCAGGCG TCG CGCCTGC TTTGGTTTTGAGCGC Avi_5482 477468 - 478265 + | lipase esterase mexE 478324 - 479514 + | HlyD family secretion protein TERM 429 479608 - 479578 - f 95 -15.5 -3.04144 | gap 1, opp_overlap 479577, overlap 479594 TCGTCAGGTCCAATA TCCT-CCCGGCAGC AAAG GCCGCCGGGCAGGA CTGTCATATCCATAT TERM 430 480998 - 480969 - g 77 -7.7 -4.28254 | GCGCAATATCGAAAA CGGCCTGTCGCCC CGTC AGGCGACCTACCG TGCCATGAAGGAAGT mexF 479695 - 482895 + | AcrB/AcrD/AcrF family protein TERM 431 482899 - 482943 + T 100 -15.7 -4.3821 | opp_overlap 482902, overlap 482901 482902 GCGGCCGAGTAAGGC AAACGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCGCTG TTTATGTTCTATTTT TERM 432 482901 - 482941 + T 100 -18.3 -3.75997 | opp_overlap 482902, overlap 482899 482902 GGCCGAGTAAGGCAA ACGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCGC TGTTTATGTTCTATT TERM 433 482902 - 482940 + T 100 -21.8 -2.83971 | opp_overlap 482902, overlap 482901 482899 GCCGAGTAAGGCAAA CGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCG CTGTTTATGTTCTAT TERM 434 482940 - 482902 - T 100 -17.4 -3.78329 | opp_overlap 482902 482901 482899 GCCGAGTAAGGCAAA CGAAGTGCCGTTGCGCTT CTG AGGCGCAGCGGCACGTCG CTGTTTATGTTCTAT Avi_5485 483934 - 482978 - | transcriptional regulator LysR family TERM 435 484309 - 484258 - g 78 -8.6 -4.23213 | gap 1 GCGAGATCGAAGAAA TGTGCGCCCCGTTGCAGGAGGCGGC CAA GGCGCCTGATGCAGCCGGG-ACACA AGCGTTCCGCGAGAC TERM 436 484977 - 484967 - g 70 -2.4 -4.84359 | CGATGTTCAGAAAAA GCGC CTT GCCC GTGAGGGCAATCTCC Avi_5486 484167 - 485339 + | hypothetical protein Avi_5487 485336 - 486016 + | hypothetical protein Avi_5488 486049 - 486996 + | Glyoxalase/bleomycin resistance Avi_5489 487014 - 487373 + | ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase Avi_5490 487377 - 488507 + | monooxygenase FAD-binding TERM 437 488590 - 488614 + F 75 -7.2 -4.3739 | gap 1 AAAATATTTTCGACG GCGTTCCGATT GGGA GATCGGA-CGC TTTTGTCGGCGCATG TERM 438 488874 - 488910 + G 86 -2.8 -5.53991 | gap 1, overlap 488906 AGATGAACCAAAGGC GCTG-GGCCTCGACGGC TTTT GCCGTTGCCGCTGCCGC TTTTTTTGGTGCATC TERM 439 489243 - 489229 - g 75 -4.2 -4.84359 | TGAGCCGGAGAAAAA GCCC TTTAGCC GGGC AATGTGGTTCACGAT TERM 440 489394 - 489411 + G 86 -6.2 -5.00616 | overlap 489407 CGTCAACTTCATATT GCCGTC TCCACT GGCGGC TTTTTTGCAGACCCG Avi_5491 488651 - 489769 + | permease (MFS superfamily) TERM 441 490001 - 490028 + G 76 -3.4 -5.00616 | GCACGCGCATCCGTT TCGTCGATATTC CGCC GGATACCGAGGA TTTTTTGAAAACCGG Avi_5492 489766 - 490347 + | transcriptional regulator protein Avi_5493 490387 - 491364 + | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) TERM 442 491676 - 491699 + G 78 -11 -3.68827 | gap 1 CAAGGCGTCGCACTT CGCCAGCC-CG GCG CGAGGCTGGTG TTTGCCTCCTCCATC Avi_5494 491364 - 492284 + | Nucleoside-diphosphate-sugar epimerase Avi_5495 492281 - 493057 + | cyclase Avi_5496 494623 - 493283 - | ABC transporter nucleotide binding/ATPase protein Avi_5498 496345 - 494675 - | ABC-type anion transport system, duplicated permease component TERM 443 496063 - 496047 - G 77 -2.2 -5.14965 | overlap 496048 AGGTTGAGGAAAAAA GTGACG GTAAA CGTCAG AAAGCCGAGAATCGG TERM 444 496079 - 496067 - G 75 -9.1 -3.95219 | GGTAAACGTCAGAAA GCCGA GAA TCGGC ACCGATTGGAGGATA Avi_5501 496749 - 497819 + | two component sensor kinase TERM 445 498363 - 498327 - g 73 -10.9 -3.41738 | overlap 498325 GTCTCAACAAACAGA TTGCCGGCGATCTCGGT GTC AGCGAAATCACCGTCAA GGTTCGCCGCGCCCA nwsB 497816 - 498454 + | two component response regulator TERM 446 498488 - 498462 - T 75 -11.5 -2.8655 | opp_overlap 498460 CGGATTGAGAGGATA GCGCCGCGCCC TAGAC AAGCGCGGCAC CATTATCGGTCGTCA Avi_5503 499414 - 498509 - | hypothetical protein ugpC 500556 - 499411 - | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) TERM 447 499554 - 499525 - G 72 -8.5 -3.90744 | CTCGGCGTCAAAGAA GTGCAATTGCTGC TGCG GCAGCAACAGCCC GATCGTGTCACCGGC ugpE 501484 - 500597 - | ABC transporter membrane spanning protein (sn-Glycerol-3-phosphate) TERM 448 501197 - 501167 - G 70 -2.5 -4.83615 | overlap 501152 501169 CACGCCCCAGAAAAA CACGTGTTTCAGC GGCGT GCGGAAAAACACG ATGGCAAAGGCGGTC ugpA 502382 - 501492 - | ABC transporter membrane spanning protein (sn-Glycerol-3-phosphate) TERM 449 502083 - 502071 - G 82 -10.5 -4.10717 | opp_overlap 502069 GAAAAACCGAAAGAA GCCGG TTC CCGGC AGTTGCCTATCGACC TERM 450 502440 - 502408 - R 80 -11.9 -3.34522 | overlap 502411 502415 ATATGCTGGAATGAA GGAGGAAGCCTGCCG ATG CGGCAGGCTTCCGGG AGCAATGAGAGCTGA TERM 451 502437 - 502411 - R 100 -22.4 -2.84098 | overlap 502408 502415 TGCTGGAATGAAGGA GGAAGCCTGCCG ATG CGGCAGGCTTCC GGGAGCAATGAGAGC TERM 452 502433 - 502415 - R 100 -16 -3.30554 | overlap 502411 502408 GGAATGAAGGAGGAA GCCTGCCG ATG CGGCAGGC TTCCGGGAGCAATGA ugpB 503802 - 502459 - | ABC transporter substrate binding protein (glycerol 3-phosphate) TERM 453 503842 - 503858 + r 72 -7.9 -3.86194 | ACAATTCCGCTTTAC CCCCGGA AAT TCAGGGG TTTCTAGCGGGCATT Avi_5508 504830 - 503988 - | ABC transporter membrane spanning protein Avi_5510 505712 - 504834 - | ABC transporter, permease protein ugpC 506806 - 505709 - | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) TERM 454 506967 - 506925 - R 82 -11.8 -3.53012 | opp_overlap 506926 506928, overlap 506926 GCTCTGCGGGGCAAA GGCTCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGATCT TTTCGTCCCAGATGC TERM 455 506966 - 506926 - R 95 -15.3 -2.71712 | opp_overlap 506926 506928, overlap 506925 CTCTGCGGGGCAAAG GCTCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGATC TTTTCGTCCCAGATG TERM 456 506926 - 506966 + r 100 -17.5 -4.2558 | opp_overlap 506925 506926, overlap 506928 CTCTGCGGGGCAAAG GCTCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGATC TTTTCGTCCCAGATG TERM 457 506928 - 506964 + r 100 -18.7 -3.73042 | opp_overlap 506926 506925, overlap 506926 CTGCGGGGCAAAGGC TCGGCGGGGCAAAGGGC TCA GCCCTTGGCTGCGCCGA TCTTTTCGTCCCAGA Avi_5512 508126 - 506945 - | ABC transporter, periplasmic substrate-binding protein TERM 458 508286 - 508312 + r 87 -13.8 -3.03124 | opp_overlap 508283 508284 GGAGCCCCATAAGCC CGAAGAGCCATT GCT AATGGCTCCTCG TCTTAGGCGATGCGG Avi_5513 510060 - 508315 - | hypothetical protein Avi_5514 511075 - 510077 - | transcriptional regulator ROK family TERM 459 510160 - 510174 + g 72 -5.6 -4.41348 | overlap 510169 CAATCATCCCCGCCT GCACGC CGA GCCTGC TTTGTTTCAGCGGGC TERM 460 510943 - 510963 + g 70 -2.5 -4.82901 | TGATCTGCTCCTGGG TTCGGGC AATGCCG GCCAGAA TTTTTGTGCCGCCAA Avi_5515 511602 - 513503 + | ABC transporter substrate binding protein (oligopeptide) TERM 461 513504 - 513546 + F 77 -11.3 -3.17075 | gap 1, opp_overlap 513504 513501 TTCTTCAAGAAGTGA TCG-GTGCCGGTGGTCTGCT GAAC GGCAGGCCACCGGCAAGCAA TTGGATTACCAGAGA Avi_5516 513627 - 514613 + | ABC transporter membrane spanning protein (oligopeptide) TERM 462 515658 - 515639 - g 82 -10 -4.14472 | overlap 515630 GCAAGAGGCTCAAAA CCTGCGAA CAAT CTCGCAGG CGCCTTGGTTGCTGG Avi_5517 514623 - 515762 + | ABC transporter membrane spanning protein (oligopeptide) Avi_5518 515759 - 516805 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 463 517555 - 517541 - g 71 -10 -3.53444 | GCAGGCTGGTGGAAA TTGCCG ATA CGGCAA GCCTGTTCGACAAGC Avi_5520 516802 - 517833 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 464 518071 - 518057 - g 81 -11.4 -3.86194 | AAGGCCTTTGAGAAA CACGCC TAT GGCGTG GACCTGATGCGGGAT phoP 517991 - 518647 + | two component response regulator TERM 465 518847 - 518865 + G 77 -11.8 -3.57144 | opp_overlap 518830 CGGACAAGCCGATTG TCCAGATC CCC GATCTGGA TTTCAACATGGACGA Avi_5522 518651 - 520033 + | Signal transduction histidine kinase TERM 466 520069 - 520081 + F 70 -3.5 -4.65895 | opp_overlap 520069 GATGCAAATAAATGA TTATA AAG TATAA TTTTTAAGTCAACGA Avi_5523 520212 - 520916 + | phosphoserine phosphatase Avi_5524 520930 - 522342 + | 4 animobutyrate aminotransferase TERM 467 522545 - 522518 - g 76 -12.6 -3.13432 | opp_overlap 522517 522526 CGCAAGATCAGCCAA GCGGGACGGCAG GGGT CTGCCGAGCCGC GCCTCTGCTTCATGG Avi_5525 522401 - 523300 + | hypothetical protein Avi_5526 523297 - 523650 + | Permeases of the drug/metabolite transporter (DMT) superfamily Avi_5527 523647 - 524528 + | hypothetical protein TERM 468 525292 - 525303 + G 74 -2.2 -5.02074 | TCGGCACGTCGCCGA TCTG ACAG CGGA TTTTTTCGAGGCTCA Avi_5529 524525 - 525340 + | carboxylesterase Avi_5530 525402 - 526550 + | hypothetical protein Avi_5531 526547 - 526915 + | Permeases of the drug/metabolite transporter (DMT) superfamily Avi_5533 527754 - 526924 - | hypothetical protein celB 530242 - 527966 - | celB protein TERM 469 528602 - 528592 - G 71 -6.8 -4.25104 | CGGCTCCGATGAAAA TCGC ATT GCGA CCGGAAAAGCGTGGG celA 532506 - 530317 - | cellulose synthase TERM 470 531480 - 531468 - G 76 -3.3 -4.89852 | opp_overlap 531479, overlap 531469 GCATATCGACAAAAA TGCTG TTC CAGCC GCGCGAATGCAGTTC TERM 471 531618 - 531595 - G 70 -2.3 -4.84359 | CGATCCGCAGAAAAA GGCCGCG TTCCATTTGT CGAGGCC GCGCTGGATAATGCC TERM 472 532211 - 532200 - G 70 -2.2 -4.84761 | ACAGGCTGAGAAAAA GCAT CAGA ACGC TGTACATCTCGGCCA Avi_5536 533687 - 532608 - | cellulose biosynthesis protein TERM 473 535974 - 535984 + G 71 -6.8 -4.25283 | overlap 535967 CCTGATGCCGGAACC GCAG GAT CTGC TTTTGCTGCGGGGCT celG 533851 - 536133 + | cellulose synthesis protein TERM 474 536263 - 536211 - T 72 -7.7 -3.92659 | opp_overlap 536211 536220 536260, overlap 536216 536220 CGCTGAAAAGGCAAA CGAAAGCAAGAGCCTCTCGGGTTCA ATC TGAACCTGACAAACTCTAGTCTCCG GTTTCCTGGATTGTG Avi_5539 538287 - 536254 - | signal transduction histidine kinase TERM 475 536727 - 536746 + g 71 -7.8 -4.08216 | CATGCAGACGGGCCA GGAAGGCG TTGA CGGCTTCC TTTTCCGAGACGTCC TERM 476 537019 - 537034 + g 72 -4.6 -4.57353 | opp_overlap 537012 CGACGAAACCCCGAT GGAGGC ATAG GCATCC TTTTCTGTGGTCGGC TERM 477 537388 - 537399 + g 78 -3.6 -4.93365 | overlap 537385 CACGCCGACCATGCG GGTG ATCT CGCC TTTTTCGTTGTGAAC Avi_5540 538528 - 539763 + | sensory box histidine kinase TERM 478 540022 - 540040 + G 81 -12.4 -3.76402 | TCGTCACGGGCAATC TTCGGCGG ATA CCGCCGGA TTTCGTCGGTGCGGT Avi_5541 539787 - 540191 + | response regulator Avi_5544 541728 - 540688 - | hypothetical protein TERM 479 541033 - 541049 + g 77 -7.9 -4.36914 | overlap 541035 TCCCTTGGCATCGTG CTCGCGG ATG CCGCCAG TTTTCTGGGGCAGGC TERM 480 541856 - 541837 - H 100 -2.8 -5.63374 | GGAAGAGCAAAAAAA TGCCTGAA AATT CTAAGGCA AAAATTCCCCGAAAC TERM 481 542213 - 542255 + G 72 -9 -3.93695 | GGCAATTGCGGCGAT CTGATCCGGGGGCGGGATTG GCG CAATTCCAGCCTCGGGGCGG TTTGTCAATGGTCGG TERM 482 543049 - 543071 + G 75 -12 -3.21593 | opp_overlap 543035, overlap 543046 TCGCCGGTTTCGCAC CGCCATGGAC GCT GTCCATGGGG TATTGTGGACCAATG TERM 483 544500 - 544488 - g 72 -4.7 -4.62069 | CGGGTACCCTAAAAA GCCCG GAA CTGGC CCGCAAGGCCCGCGA cvgS 541988 - 545098 + | two component sensor kinase/response regulator hybrid galE 545185 - 546078 + | UDP-glucose 4-epimerase TERM 484 546272 - 546236 - T 100 -15.2 -3.73386 | gap 1, overlap 546238 AGACAATCAGCCAAA GACATC-CGCCGCCGGT TTGG ACCGGCGGCGTGACGTT CGCGTCAGGCGAAGC TERM 485 546270 - 546238 - T 100 -17.8 -3.44255 | gap 1, overlap 546236 ACAATCAGCCAAAGA CATC-CGCCGCCGGT TTGG ACCGGCGGCGTGACG TTCGCGTCAGGCGAA Avi_5548 547398 - 546277 - | oxidoreductase TERM 486 546807 - 546847 + g 85 -10.4 -4.3208 | gap 1, opp_overlap 546808 546837, overlap 546808 CCGCATCGGCAGGAT AGGTCGCACCGTTTGCTGC GCGA GCACCA-ACGGCGCGACCG TTTTCAATTATCACG TERM 487 546808 - 546846 + g 82 -13.9 -3.18766 | gap 1, opp_overlap 546808 546837, overlap 546807 CGCATCGGCAGGATA GGTCGCACCGTTTGCTGC GCGA GCACCA-ACGGCGCGACC GTTTTCAATTATCAC TERM 488 546846 - 546808 - G 86 -16.1 -2.79183 | gap 1, opp_overlap 546808 546807, overlap 546837 CGCATCGGCAGGATA GGTCGCACCGTTTGCTGC GCGA GCACCA-ACGGCGCGACC GTTTTCAATTATCAC Avi_5549 548443 - 547439 - | NAD binding oxidoreductase Avi_5550 549993 - 548470 - | glutamine ABC transporter TERM 489 549975 - 549965 - G 74 -6.8 -4.4009 | opp_overlap 549965 549943 TCCCAGTCGAGAAAA CTGC GAC GCAG TGTTTCAAGCCATTC glnH 550825 - 550073 - | ABC transporter substrate binding protein (glutamine) TERM 490 551077 - 551043 - H 95 -15.8 -3.08679 | opp_overlap 551022 551044, overlap 551046 551065 TCTTGTTATTGAATA TGAGACCGGTCTCTAT CTT AAAGAGACCGGTCTCT TTTGGTTTGACAATT TERM 491 551044 - 551076 + H 100 -19.3 -4.55128 | opp_overlap 551043 551046 551065, overlap 551022 CTTGTTATTGAATAT GAGACCGGTCTCTAT CTT AAAGAGACCGGTCTC TTTTGGTTTGACAAT TERM 492 551074 - 551046 - H 100 -16.1 -2.75992 | opp_overlap 551022 551044, overlap 551043 551065 TGTTATTGAATATGA GACCGGTCTCTAT CTT AAAGAGACCGGTC TCTTTTGGTTTGACA TERM 493 552144 - 552132 - g 74 -2.6 -5.011 | ATGGAAAGAATAAAA GGCG CAAAC CACC CAGCTCGGCATGTCA Avi_5553 551142 - 552212 + | transcriptional regulator LacI family TERM 494 552198 - 552212 + F 100 -8.6 -5.4387 | overlap 552195 CGCAGCTCCATTGCA TCAAGG CTG CCTTGA TTTTTTGATTTATAT mcpA 552490 - 554451 + | methyl-accepting chemotaxis protein cheW 554451 - 554924 + | chemotaxis protein TERM 495 554946 - 554978 + F 100 -20.7 -3.05522 | opp_overlap 554952, overlap 554946 554970 GAAATTTGTAGCAGG CCCAAAGCCCGGAAG TCT CTTCCGGGCTTTGGC GTTTTCAACCCATTG TERM 496 554946 - 554979 + F 100 -20.5 -4.09739 | gap 1, opp_overlap 554952, overlap 554946 554970 GAAATTTGTAGCAGG C-CCAAAGCCCGGAAG TCT CTTCCGGGCTTTGGCG TTTTCAACCCATTGC TERM 497 554972 - 554952 - f 100 -16.9 -3.58343 | opp_overlap 554946 554946 554970 TGTAGCAGGCCCAAA GCCCGGAAG TCT CTTCCGGGC TTTGGCGTTTTCAAC TERM 498 555227 - 555213 - g 75 -4.2 -4.731 | opp_overlap 555226, overlap 555214 555223 AACCTATGAAGAAAA TGACGA AGA TCGTCC TGGTCGGCCTGGTGC TERM 499 555523 - 555509 - g 71 -7.1 -4.18934 | CAGGACCTGAAGAAA GGCGA GTTGA TCGCC ACGCTGGATGACGCA Avi_5556 555203 - 556585 + | HlyD family secretion protein Avi_5557 556582 - 559680 + | AcrB/AcrD/AcrF family protein TERM 500 560846 - 560867 + G 71 -11.5 -3.22298 | CAATCTGTCGTTGAT GGCGCTGGC AGTG GCCAGCGGC TTCGTGGTGGATGAC TERM 501 560954 - 560925 - g 75 -4.2 -4.74706 | gap 1, overlap 560926 560933 560934 GCCAATATCGAAAAA GGCATGAAGCCGC TTGAG GCGGC-CCACGCG GGCGCCCGGCAGATC TERM 502 561466 - 561487 + G 80 -5 -5.00616 | opp_overlap 561466, overlap 561455 561467 CGGCGGTGCAGAGCA TCGGCGCC TCTGTT GGCGGCGG TTTTTTGGGAACAGC Avi_5558 559677 - 562784 + | AcrB/AcrD/AcrF family protein TERM 503 562971 - 562955 - g 71 -7.9 -4.0896 | overlap 562956 AAAGCCTCGGTAAAA CTGGCGG ATA CCGCCAC CCATGGTCGCCGTGC Avi_5559 562925 - 563683 + | transcriptional regulator GntR family gcvT 563807 - 565225 + | glycine cleavage system T protein aminomethyltransferase Avi_5561 567760 - 565487 - | P type cation (metal) transporter ATPase component TERM 504 567669 - 567693 + g 78 -6.3 -4.56597 | opp_overlap 567666, overlap 567670 567673 ACATCGGTAATACCG GCCACACGGCG CGC TGCCGTGTCGA TTTTTGCCGCGCAGG Avi_5562 567832 - 568251 + | transcriptional regulator TERM 505 568257 - 568300 + T 100 -10.5 -5.38958 | gap 1, opp_overlap 568262 568265, overlap 568260 568287 CCGGCACTGATGTCA CT-AGAGTATCGGGCCGA AAATAGGAA TCGGTCCGATGCTCTCAG TTTTTGTTTGTGCAT TERM 506 568260 - 568296 + T 78 -12.4 -2.96898 | opp_overlap 568262 568265, overlap 568257 568287 GCACTGATGTCACTA GAGTATCGGGCCGA AAATAGGAA TCGGTCCGATGCTC TCAGTTTTTGTTTGT glgB 570566 - 568359 - | 1,4-alpha-glucan branching enzyme aglA 573865 - 570563 - | alpha-glucosidase TERM 507 572945 - 572932 - G 72 -6.7 -4.2558 | opp_overlap 572932 GATTGCGCAGGAAAA TTGCC CATT GGCAA TTATCGGGGATCTCA Avi_5565 577125 - 573877 - | alpha-amylase-related protein TERM 508 575539 - 575523 - G 74 -2.2 -4.93365 | overlap 575524 575531 575534 GCTCATAATGAAAAA TCGCAA ACGGA TTGCGC CAAGCCTCGACGACA TERM 509 575802 - 575825 + g 77 -12.4 -3.57144 | gap 1 TCGCCAGACGCGGTG CGGCGGC-GGC CTC GCCTGCCGTCG TTTCAGGCTCGAACA TERM 510 576150 - 576132 - G 79 -5.9 -4.82901 | opp_overlap 576135, overlap 576135 GTTTTCCGAGAAAAA CATGCCG TTGTC CGGCTTG ATCATTGAGGGCGCG TERM 511 576569 - 576553 - G 72 -9.3 -3.65046 | CGTCCAGGCGAAGAA CCGGGCC GAC GGACCGG CGGCGATCAGGTCTC TERM 512 578400 - 578412 + G 78 -6.2 -4.64676 | overlap 578386 578345 GGCCGCCTTGCAGCC GGCG TTGAT CGCC TTTTCTTGCCGCTCG Avi_5566 577396 - 579210 + | 4-alpha-glucanotransferase cspA 579676 - 579888 + | cold shock protein TERM 513 579927 - 579948 + T 100 -13.7 -4.42851 | overlap 579935 GCGGATGATTTTGAA CGGCGTTCC GCAA GGAGCGCCG TTTTGCGTTTATTGC TERM 514 580021 - 580003 - T 95 -9.6 -5.00616 | GGCGTGTGCAAAAAA CCTGAAGC AAG ACTTCAGG CGGCCCGCACAGGCC Avi_5568 581042 - 580017 - | hypothetical protein Avi_5569 582072 - 581026 - | hypothetical protein TERM 515 581727 - 581698 - G 70 -4.2 -4.62069 | overlap 581707 GCCGCATTCGAAAAA CTGGAAATAGGG TTTCAC CCCCAGATCCAG CTCTCTGTGCGGCAA thuB 583302 - 582202 - | trehalose utilization-related protein TERM 516 583268 - 583237 - G 95 -17.4 -3.53811 | gap 1, overlap 583238 GCTATTGGTGGCAAA CTCGATGGCATGGCG GTT CGCCATGCCACCG-G TACCGAGAATGAGAA TERM 517 583268 - 583238 - G 89 -17.6 -2.72144 | overlap 583237 CTATTGGTGGCAAAC TCGATGGCATGGCG GTT CGCCATGCCACCGG TACCGAGAATGAGAA thuA 584084 - 583299 - | trehalose utilization-related protein TERM 518 584145 - 584124 - H 72 -4.3 -4.68593 | opp_overlap 584134, overlap 584125 584126 TCCATCAGTGAAAAA TCCGCAGCC TGAT GGCTGCAAG CCCCCTTGGTGCCGC TERM 519 584772 - 584807 + G 78 -11.2 -3.7108 | gap 1, overlap 584765 584773 GGAGGCAGTCGAGAG GCGCGATGTGCTGGCGA TGA TCGCCAGCA-ATCGGGA TTTCCATGTCGCCAT TERM 520 584773 - 584806 + G 80 -14.7 -2.82327 | gap 1, overlap 584765 584772 GAGGCAGTCGAGAGG CGCGATGTGCTGGCGA TGA TCGCCAGCA-ATCGGG ATTTCCATGTCGCCA Avi_5575 584380 - 585093 + | transcriptional regulator GntR family TERM 521 585786 - 585770 - g 78 -8.7 -4.14739 | CTATGCAGCCGAAAA CATCACC TCC GGCGATG ACGGCCTGATCCTGA dapA 585237 - 586178 + | dihydrodipicolinate synthase TERM 522 586165 - 586185 + T 75 -11.9 -2.85366 | opp_overlap 586168, overlap 586169 ACGAAGCCCGCTATC CAAGCCCTC GTT GAGGGTTTG CTTTAGAATTTTACG TERM 523 586169 - 586181 + T 81 -9.1 -4.08919 | opp_overlap 586168, overlap 586165 AGCCCGCTATCCAAG CCCTC GTT GAGGG TTTGCTTTAGAATTT Avi_5578 589271 - 586203 - | alpha-mannosidase TERM 524 586236 - 586259 + g 100 -9.6 -4.91873 | CGTCAGAATTTCGAA GGGCTGGA AGGCAAGA TCCAGCCC TTTTTCGTTAATGTC TERM 525 588558 - 588579 + g 83 -9.4 -4.26076 | opp_overlap 588537 ATCGATATGGGTGTG GCCGGTTG CCATCA CGACCGGC TTTTCCTCAAAATCA Avi_5579 590602 - 589337 - | hypothetical protein TERM 526 589465 - 589486 + g 86 -14.5 -3.29096 | opp_overlap 589451, overlap 589479 ACATGGCCCCAGCCC TTGCGCCAG CGCG CTGGCGCAA TTCGTCATTCATGCC TERM 527 591497 - 591474 - g 72 -4.6 -4.64766 | gap 1, overlap 591487 CCTATATGGGAAAAA CGCTGAAAATC GAC GATTT-CGGCG CCGCTAATATCGATG togB 591125 - 592408 + | ABC transporter/Periplasmic pectin oligomer binding protein TERM 528 592460 - 592435 - g 85 -15.5 -3.05816 | gap 1, opp_overlap 592437, overlap 592420 CCACTCGCGATGGAA TGGC-CGGCACC TCT GGTGCCGCGCCA GTGATGCAGCCTATC TERM 529 592497 - 592527 + G 74 -11 -3.57674 | overlap 592495 592499 592501 CCGTCGCCGTTCAGG GCCAGTCTGGCGCG CAA CGCGCCGGGCTATC TATTTCTCCTGCCCT TERM 530 592499 - 592525 + G 76 -12.2 -3.36228 | overlap 592497 592495 592501 GTCGCCGTTCAGGGC CAGTCTGGCGCG CAA CGCGCCGGGCTA TCTATTTCTCCTGCC TERM 531 592501 - 592523 + G 86 -14.8 -3.24406 | overlap 592499 592497 592495 CGCCGTTCAGGGCCA GTCTGGCGCG CAA CGCGCCGGGC TATCTATTTCTCCTG TERM 532 592794 - 592809 + G 78 -8.2 -4.42653 | GGCATTCGCGGCCTA CCGCTC TACC GGGCGG TTTTCTACCTGCCAT togM 592434 - 593378 + | ABC transporter membrane spanning protein (galacturonic acid) TERM 533 593433 - 593422 - g 84 -7.2 -4.72986 | opp_overlap 593415 CATGCGCAGGAAAAA CGGC GCTG GCCG GTGTCCCTTATCCTG togN 593371 - 594252 + | ABC transporter membrane spanning protein (galacturonic acid) Avi_5583 594281 - 595309 + | oxidoreductase Avi_5584 595302 - 596372 + | oxidoreductase TERM 534 596675 - 596659 - g 73 -3.5 -4.83615 | GACTGTTTATAAAAA CCTGGCC TTC GGTCTGG AAACGGCTGGCATGA togA 596372 - 597466 + | ABC transporter galacturonide binding/ATPase protein Avi_5586 597555 - 598229 + | hypothetical protein TERM 535 598440 - 598467 + T 100 -12 -4.57569 | opp_overlap 598440 TGAAGAAACAAAAAA GCCTGCCGCG GGAGGAGG TGCGGCAGGC TTTTTAAAAGAGTGA TERM 536 598467 - 598440 - T 100 -11.3 -5.80003 | opp_overlap 598440 TGAAGAAACAAAAAA GCCTGCCGC GGGAGGAGGT GCGGCAGGC TTTTTAAAAGAGTGA TERM 537 598751 - 598731 - T 100 -11.1 -4.70659 | opp_overlap 598731 TCCCAGACGCAAAAA CGCCCGC GTCATCG GCGGGCG TCGTTCAAGCAGCAA TERM 538 598731 - 598751 + T 70 -11.1 -2.70932 | opp_overlap 598731 TCCCAGACGCAAAAA CGCCCGC GTCATCG GCGGGCG TCGTTCAAGCAGCAA Avi_5587 598925 - 598779 - | hypothetical protein Avi_5588 599271 - 600128 + | dehydrogenase TERM 539 600227 - 600187 - f 71 -2.6 -4.89562 | gap 2, opp_overlap 600189 600193, overlap 600182 600178 600188 600189 GCAAAACCAAGAAAA GTTTTCGTCGGTCAGGTTCA GAT TGAACCTGACCGACTGT--C GTTTTGCGGTAGTGG TERM 540 600189 - 600228 + F 91 -10.8 -4.15565 | gap 1, opp_overlap 600182 600178 600187 600188 600189, overlap 600193 AAAACCAAGAAAAGT TTTC-GTCGGTCAGGTTCA GAT TGAACCTGACCGACTGTCG TTTTGCGGTAGTGGC TERM 541 600193 - 600223 + F 100 -22.8 -3.10537 | opp_overlap 600178 600187 600189 600188, overlap 600189 CCAAGAAAAGTTTTC GTCGGTCAGGTTCA GAT TGAACCTGACCGAC TGTCGTTTTGCGGTA Avi_5589 600415 - 602313 + | sensor histidine kinase TERM 542 602673 - 602645 - g 89 -6 -5.1101 | gap 1, overlap 602646 CCACCACGCAAAAAA GCTGCGATTGCCA GTAC CGGC-ATCGCAGG ACTGGACGAAATTCT TERM 543 602672 - 602646 - g 72 -9.5 -3.65883 | gap 1, overlap 602645 CACCACGCAAAAAAG CTGCGATTGCCA GTAC CGGC-ATCGCAG GACTGGACGAAATTC TERM 544 603515 - 603538 + G 82 -10.2 -4.1891 | overlap 603524 GCAACGGCAGCCCTC GAGCGCGGCG AAAG CGTCGCTCTC TTTCTGTTCGAGGAG Avi_5592 602627 - 604069 + | hypothetical protein TERM 545 604404 - 604417 + G 79 -5.2 -4.77165 | overlap 604406 ATTGCTTTCCGCCTG GCCG GGAGCG CGGC TTTTGTTCTACACAC TERM 546 604860 - 604883 + G 71 -10.2 -3.48598 | overlap 604858 TGCGATCAAATATGG CGCCCTGTCG GTCC CGGAAGGGCG TGTTTCCCTTCGTTG exsG 604066 - 605124 + | two component sensor kinase Avi_5594 605900 - 605184 - | hypothetical protein Avi_5595 607051 - 606008 - | zinc-binding oxidoreductase TERM 547 607008 - 607018 + g 72 -4.6 -4.7173 | GCTGCCTTCATCTCA TCGG TAT CCGG TTTTTCGCTATACTG TERM 548 607097 - 607113 + H 77 -12.3 -2.71791 | opp_overlap 607111, overlap 607096 GCCACATTCACCGAT GCCTTGG GCA CCAAGGC CTTTGGCGCGCCCGT Avi_5596 607468 - 607968 + | hypothetical protein TERM 549 607981 - 608000 + F 95 -12.2 -4.16842 | opp_overlap 607981 TGATCTCTGGACGAA CCTTTCGC TGTT GCGAAAGG TTTCTTCCCCCTGAA TERM 550 608000 - 607981 - f 81 -12.2 -3.14564 | opp_overlap 607981 TGATCTCTGGACGAA CCTTTCGC TGTT GCGAAAGG TTTCTTCCCCCTGAA TERM 551 608017 - 608034 + F 100 -9.8 -5.49569 | opp_overlap 608017 TTCTTCCCCCTGAAA GGCCGC CAATGT GCGGCC TTTTTTGTGTTCATG TERM 552 608034 - 608017 - f 74 -9.8 -3.53012 | opp_overlap 608017 TTCTTCCCCCTGAAA GGCCGC CAATGT GCGGCC TTTTTTGTGTTCATG ecfR 608151 - 608675 + | ECF family sigma factor TERM 553 609053 - 609063 + G 74 -2.4 -4.89393 | GGAGGGTCATTATCG CCTC GGC GCGG TTTTTATCGAATTTG Avi_5598 608877 - 609617 + | Transcriptional regulator TERM 554 609842 - 609853 + F 70 -7.2 -4.07885 | opp_overlap 609835 TTCATAATTCCTGGA GCCG GACT CGGC TTTTGGGGGGGCGTC Avi_5599 610125 - 611354 + | MFS permease Avi_5600 611477 - 612628 + | hypothetical protein TERM 555 612637 - 612665 + F 100 -21.9 -4.11404 | opp_overlap 612646 CTGGTAAGTGGCAGA CGGCGAAGATGGT TTG ACCATCTTCGCCG TTTCTATCCTCTGAA TERM 556 612790 - 612737 - f 100 -28.5 -3.06815 | opp_overlap 612737 ATCCTTGCGAATACA GCACGACAGTCTCTTTTGGGCGCTC GATA AAATGCCCAAAAGAGACTGTCGTGC TTTAATTTTTCTGCC TERM 557 612737 - 612790 + F 100 -27.8 -4.38116 | opp_overlap 612737 ATCCTTGCGAATACA GCACGACAGTCTCTTTTGGGCGCT CGATAA AATGCCCAAAAGAGACTGTCGTGC TTTAATTTTTCTGCC Avi_5601 613415 - 613921 + | hypothetical protein Avi_5602 613931 - 615901 + | GGDEF family protein TERM 558 616445 - 616463 + G 75 -9.6 -3.93659 | overlap 616429 CGTGAAGATGGATAT CTGCAAGG CTT CTTTGCAG TTTCATGATTTTCGT Avi_5603 616068 - 616898 + | metal dependant beta lactamase protein TERM 559 618324 - 618335 + G 71 -7.2 -4.11216 | opp_overlap 618315 AATTCATCGGCGATG GCGC GATG GCGC TTTTCGGCGTCACAG cyaA 617045 - 618760 + | adenylate cyclase TERM 560 618786 - 618776 - f 74 -3.2 -5.00616 | CCTGCGGCGAAAAAA TCCG ATG CGAA AACAAAACGACAGTA TERM 561 618809 - 618789 - f 70 -6.9 -4.14511 | overlap 618794 AATCCGATGCGAAAA CAAAACGAC AGT ATCGTCTTG ATTCCATTGTGTTGA TERM 562 618804 - 618794 - f 77 -3.2 -5.09259 | overlap 618789 GATGCGAAAACAAAA CGAC AGT ATCG TCTTGATTCCATTGT TERM 563 619493 - 619468 - g 82 -10.5 -4.18018 | gap 1, opp_overlap 619484, overlap 619471 619491 GCTGCGCATTCAAAA CCATCT-GGCGG TTG CCGCCAAAATGG CTGTACTCAGCAAGC TERM 564 619669 - 619658 - g 74 -7.2 -4.40561 | opp_overlap 619658 CTGGCCGAAAAAGAA GGCC GCCA GGCC TATATCGATACGTTG cyaA 618953 - 620305 + | adenylate cyclase TERM 565 620954 - 620964 + G 71 -8.2 -4.08216 | overlap 620958 AAGGACGAGGTCGAG CCGC TGG GCGG TTTTACCGGCGATGC Avi_5606 620486 - 623200 + | ABC transporter nucleotide binding/ATPase protein TERM 566 623265 - 623278 + G 72 -9.5 -3.6543 | overlap 623266 CGAAGTCGAAATGTT GCGGC GTGT GCCGC TGTTTTCCCAGATTG Avi_5607 623236 - 623700 + | cAMP-dependent protein kinase regulatory subunit TERM 567 624260 - 624270 + G 71 -6.8 -4.21194 | opp_overlap 624259 GGTTTATGACAGTAT GCTC GAT GAGC TTTTCAGTGCTGAAA suhB 623859 - 624698 + | extragenic suppressor protein SuhB Avi_5609 625546 - 624677 - | hypothetical protein TERM 568 624728 - 624760 + g 74 -11.3 -3.53012 | GATCAGCGCTTGAAG TCCGACCGGATCGTC AGT GGTGATCTGGTCGCA TTTCAGCGCCAGCAG TERM 569 625310 - 625339 + g 75 -9.9 -3.86015 | gap 1, opp_overlap 625285 625283 CTGGTCCACTGAGGC GCCGCGCGCCGGGC CTT GGCCGGT-CGTGGC TTTGTCCAAAACCTC Avi_5610 626615 - 625533 - | ABC transporter nucleotide binding/ATPase protein TERM 570 625629 - 625640 + g 79 -7.2 -4.56775 | overlap 625628 CCTGACCTGCAATTC GGCG CGGT CGCC TTTTTGCCAGCCGGT Avi_5611 627468 - 626659 - | ABC transporter membrane spanning protein (sugar) Avi_5612 628369 - 627479 - | spermidine/putrescine ABC transporter permease protein Avi_5613 629556 - 628369 - | ABC transporter substrate binding protein TERM 571 630154 - 630166 + G 71 -6.9 -4.17048 | GCGTCAGGGGACGTG CCGGG TAA TCCGG TTATTTTACCAGAGG TERM 572 630326 - 630304 - g 77 -13.4 -2.88544 | opp_overlap 630300, overlap 630309 GTCGATGTCGACACA CCAGACGCCA TTA TGGCGGCTGG CGGAGTGTTGAACGG Avi_5614 629788 - 630345 + | hypothetical protein uxuA 631372 - 630359 - | mannonate dehydratase Avi_5617 632154 - 633452 + | flavin-containing amine oxidase TERM 573 633507 - 633530 + F 70 -10.2 -3.15861 | AGATTTTCAGCGTAA GGCGCATGCG GCAT CGGGTGCGCC TTGCTAGAAGTCATA Avi_5618 633816 - 634274 + | hypothetical protein Avi_5619 634324 - 634605 + | polyketide synthase Avi_5621 634711 - 635541 + | Amino acid adenylation protein TERM 574 639195 - 639212 + G 79 -12.7 -3.28791 | opp_overlap 639157 639158 CTCCTGCTGCCGCAT CCGCTGC ACCA GCAGCGG TTGTCCGCGACACCT Avi_5624 635579 - 642925 + | polyketide synthase TERM 575 643036 - 643011 - g 87 -7.5 -5.00616 | gap 1, overlap 643012 CCTCCTTGCAAAAAA CGACTCCCGCTC GAC GGGCGGG-GTCA AGGACTTCCGGATCG TERM 576 647373 - 647385 + G 72 -4.8 -4.56597 | TCAGCGGATCGCCCA GGCT GTCGA AGCC TTTTTGCAGCGCCAG Avi_5625 642922 - 650028 + | polyketide synthase Avi_5626 650044 - 651624 + | hypothetical protein Avi_5627 651663 - 653309 + | Acyl-CoA dehydrogenase Avi_5628 653387 - 655198 + | Acyl-CoA dehydrogenase Avi_5629 656191 - 655247 - | formamidase Avi_5630 657195 - 656209 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5631 658217 - 657192 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5632 659191 - 658220 - | ABC transporter membrane spanning protein (oligopeptide) dppC 660255 - 659203 - | ABC transporter membrane spanning protein (dipeptide) TERM 577 660166 - 660180 + g 74 -2.7 -5.0133 | overlap 660163 GGCACGGTGCCACGG GCTGG CACCA CCCGC TTTTTTGCGGGGCTG Avi_5634 662039 - 660333 - | hypothetical protein Avi_5637 662988 - 662095 - | hydrolases or acyltransferases (alpha/beta hydrolase superfamily) TERM 578 662272 - 662317 + g 71 -11.2 -3.21416 | gap 1, opp_overlap 662268, overlap 662271 662282 GCCGGAAATCAGCAG GGTCGGGACA-TTGATGGTCG AGAGC CGACCCTCAATTGTCCAGTCC TTCATGGTGCCGATG Avi_5638 663625 - 663020 - | Response regulator antiterminator domain-containing protein TERM 579 663297 - 663313 + g 71 -7.9 -4.09685 | AGGGCGCTATAGGCA CCGGTAG AGC CGACCGG TTTTAGGAGATGGGC Avi_5639 664854 - 663622 - | ABC transporter substrate binding protein TERM 580 664895 - 664862 - H 100 -6 -5.60993 | gap 2, opp_overlap 664862 664861, overlap 664863 664864 TCGCGCATAAAAAAA GCCCCG--GCTCGTCC GGGA AGACGAGTGGCGGGGC GTGTTTGCCTGCGGC TERM 581 665837 - 665852 + G 70 -2.5 -4.83169 | TTTTCCAAGGCCGGT CTGGA GCTTGA TCCGG TTTTTGTGACGGGGT Avi_5640 665201 - 666103 + | transcriptional regulator LysR family TERM 582 666137 - 666107 - f 72 -9.7 -3.33419 | overlap 666105 666101 ATGGGGAAATGAAGA TGTGCGTGTAGCG TTTTG CGCTCCACGCAGA ACACAAAAAACCGCA TERM 583 666160 - 666148 - f 91 -3.3 -5.5208 | opp_overlap 666148, overlap 666139 GCAGAACACAAAAAA CCGCA TTG TGTGG TTGCTTGCGAAATGA Avi_5641 666247 - 667773 + | ABC transporter substrate binding protein (oligopeptide) Avi_5642 667892 - 668842 + | ABC transporter membrane spanning protein (oligopeptide) TERM 584 668876 - 668890 + G 83 -4.9 -5.06414 | opp_overlap 668865 CAAAGCCGTCTACCA GGCGG CTCAC CCGTC TTTTTCTTCGCCCGA Avi_5643 668839 - 669705 + | ABC transporter TERM 585 670557 - 670576 + G 75 -5.6 -4.58283 | GTTCCCGGGTTTGCG CAGCTGCC GGAA GGTTGCTG TTTTTCCGACCGTTG Avi_5644 669702 - 670697 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) Avi_5646 670697 - 671689 + | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 586 672214 - 672168 - g 80 -9.3 -4.1899 | gap 2, overlap 672169 GGATCTCAGCCAAAA CCCCGGCGGCTCCAGTGCCGGTG CGG CAGCGGCAG-GG-GCTGCCGGGT TCGGACCGCTGCATA TERM 587 672213 - 672169 - g 76 -12.8 -3.11073 | gap 2, overlap 672168 GATCTCAGCCAAAAC CCCGGCGGCTCCAGTGCCGGTG CGG CAGCGGCAG-GG-GCTGCCGGG TTCGGACCGCTGCAT gatA 671716 - 673110 + | glutamyl-tRNA amidotransferase subunit A Avi_5649 674920 - 673127 - | Allophanate hydrolase TERM 588 673266 - 673243 - G 72 -6.6 -4.2828 | CGTCATCCAGGAAAA CCGTGCCGAT ACAC ATCGGCGAGG GGATCATGTTGACGA TERM 589 674752 - 674742 - G 83 -8.2 -4.56597 | overlap 674743 674744 GTCTCCGGCGAAAAA GCGC CGA GCGC CTGGGCCTGATCCAG Avi_5650 675268 - 674924 - | Allophanate hydrolase Avi_5651 675932 - 675261 - | hypothetical protein Avi_5652 677455 - 675929 - | ABC transporter nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 590 676322 - 676332 + g 70 -2.4 -4.74504 | opp_overlap 676322 CGCCTTGGCATTCAA CCAG AAC CGGG TTTTTCCCTTGGCAT Avi_5653 678513 - 677452 - | cyanuric acid amidohydrolase TERM 591 678258 - 678243 - G 72 -4.6 -4.59773 | opp_overlap 678252 GTTCACGGGCAAAAA TCGTCC AATG GGGCGA CAGCGCCCCTTCCGT TERM 592 678252 - 678267 + g 73 -11.8 -3.05384 | opp_overlap 678243 CAAAAATCGTCCAAT GGGGCG ACAG CGCCCC TTCCGTGCCGCCGGA Avi_5654 679211 - 678510 - | hypothetical protein Avi_5655 680236 - 679220 - | amidohydrolase TERM 593 680294 - 680270 - R 90 -11.4 -3.90291 | gap 1 ATTTCGTCAAGGAAA GCGCCG-CCGG AGCG CCGGACAGCGC CCGTGTCGGTGACGA Avi_5656 681179 - 680253 - | ABC transporter membrane spanning protein (sugar) Avi_5657 682357 - 681179 - | ABC transporter membrane spanning protein (sugar) Avi_5659 683630 - 682362 - | lipoprotein TERM 594 682900 - 682886 - G 75 -8.6 -4.07687 | ATTCGCCCGTGAAAA TCACCT GGC AGGTGA TGGACGGATCGACGG TERM 595 683615 - 683630 + g 74 -7.6 -4.19506 | overlap 683608 CTCTGGTTGCTGCCA GTGCAT CTGT ATGCAC TTTTAAAATTCAGAT Avi_5660 683830 - 684513 + | transcriptional regulator GntR family Avi_5661 686193 - 684532 - | ABC transporter nucleotide binding/ATPase protein TERM 596 685775 - 685806 + g 71 -11.4 -3.27476 | opp_overlap 685783 685785 685786 TTGGGGAGGGACAGC GCCCGAAACAGCGC CACG GCGCGGGTGCGGGC TTCATCCTTCGACAT Avi_5662 687065 - 686190 - | ABC transporter membrane spanning protein Avi_5663 688018 - 687062 - | ABC transporter membrane spanning protein Avi_5666 689812 - 688199 - | ABC transporter substrate binding protein (oligopeptide) hadL 690614 - 689895 - | 2-haloalkanoic acid dehalogenase bioA 692233 - 690860 - | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 597 692271 - 692252 - R 77 -2.8 -5.04385 | gap 1, overlap 692253 CAGATCTCCAAAAAA TCAGCCGAG GGC CT-GGCTGG CGAGTGCGTAGGTTT Avi_5669 693097 - 692252 - | hypothetical protein dehII 693473 - 694141 + | haloacid dehalogenase type II TERM 598 694625 - 694641 + G 85 -2.2 -5.52986 | opp_overlap 694626, overlap 694626 CCATCGGAGTTAAAA AGTGAG GTTGG CTCACC TTTTTTTGGTGCCAT TERM 599 694640 - 694626 - g 75 -5.7 -4.66609 | opp_overlap 694625 694626 CATCGGAGTTAAAAA GTGAG GTTGG CTCAC CTTTTTTTGGTGCCA ordL 694145 - 695419 + | oxidoreductase Avi_5672 695605 - 695808 + | hypothetical protein TERM 600 695783 - 695825 + T 100 -9.8 -5.10656 | opp_overlap 695787, overlap 695784 695791 ACGGTGACGCCTCAA GCGAGCGCCTGTCGGGTTCA GAT TGAACCGGACAGATTCTCGA TTTTCTTGTTTTCGT TERM 601 695784 - 695824 + T 93 -13.3 -3.63953 | opp_overlap 695787, overlap 695783 695791 CGGTGACGCCTCAAG CGAGCGCCTGTCGGGTTCA GAT TGAACCGGACAGATTCTCG ATTTTCTTGTTTTCG TERM 602 695791 - 695817 + T 85 -13.8 -2.7246 | opp_overlap 695787, overlap 695784 695783 GCCTCAAGCGAGCGC CTGTCGGGTTCA GAT TGAACCGGACAG ATTCTCGATTTTCTT Avi_5673 697329 - 695899 - | aldehyde dehydrogenase TERM 603 696918 - 696884 - G 74 -7.8 -4.24404 | overlap 696877 696885 ATGGAAACCGGAAAA TTCCATGGCGTGATCG CTC CGACCACGCCATAAGG CTCGCTCATGATCAT Avi_5674 697743 - 697387 - | hypothetical protein argE 698889 - 697759 - | acetylornithine deacetylase Avi_5677 699689 - 699084 - | regulatory protein TERM 604 699895 - 699914 + G 74 -7.8 -4.19735 | GCGATTTCTTGTTGC GGGTTGCG CTAT TGCAGCCC TTTCCTTTTCCACCC Avi_5678 699866 - 701026 + | RND multidrug efflux membrane permease Avi_5679 701030 - 704185 + | AcrB/AcrD/AcrF family protein TERM 605 704213 - 704255 + F 100 -17.8 -3.71607 | opp_overlap 704215, overlap 704214 704217 AGCGTATCGTTTGAA AAGACCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGGTCAA TTTACGTGATATTCC TERM 606 704214 - 704254 + F 100 -21.3 -2.82482 | opp_overlap 704215, overlap 704213 704217 GCGTATCGTTTGAAA AGACCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGGTCA ATTTACGTGATATTC TERM 607 704253 - 704215 - f 100 -20.4 -4.08767 | opp_overlap 704214 704213 704217 CGTATCGTTTGAAAA GACCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGGTC AATTTACGTGATATT TERM 608 704217 - 704251 + F 100 -21.6 -2.66748 | opp_overlap 704215, overlap 704214 704213 TATCGTTTGAAAAGA CCGGATCGGAGATTGC AAC GCAGTTTCCGATCCGG TCAATTTACGTGATA TERM 609 704366 - 704405 + F 73 -9.4 -3.60296 | opp_overlap 704374, overlap 704374 704375 TAAAATGTCTTTTCT GCATGATACCTTAAGCCG ATTC CGGTTTAAGCTTTTATGC TTTAAGGTCCGCGTG TERM 610 704374 - 704397 + F 77 -6 -4.61566 | opp_overlap 704374, overlap 704366 704375 CTTTTCTGCATGATA CCTTAAGCCG ATTC CGGTTTAAGC TTTTATGCTTTAAGG Avi_5680 704439 - 705971 + | propionyl-CoA carboxylase Avi_5681 706051 - 706428 + | hypothetical protein Avi_5682 706486 - 706842 + | hypothetical protein TERM 611 707654 - 707672 + G 75 -8.8 -3.97947 | opp_overlap 707654, overlap 707655 GGCGGTTGGATATTA TTCCGCCG GCA CGGTGGAG TTTATCGTCGATGGC accC 706845 - 708845 + | acetyl-CoA carboxylase biotin carboxylase Avi_5684 709237 - 708887 - | KluB Avi_5686 709508 - 709239 - | hypothetical protein TERM 612 710950 - 710895 - g 100 -19.6 -3.21099 | opp_overlap 710943, overlap 710876 710920 710921 GGGTGGCATGACCAA GGCGGTGGCTGACGGCCTGCCCAAAC GCCT GATCGAGGAGGCCGCCACCCGCCGCC AGGCGGCTGTGGACC mutA 709627 - 711765 + | methylmalonyl-CoA mutase Avi_5688 711870 - 712334 + | transcriptional regulator TERM 613 713198 - 713185 - g 74 -8.1 -4.2349 | overlap 713186 CGTCGAGACGGAAAA GGCTG GCGC CAGCC TGCTGGCTCGGATCA Avi_5689 712340 - 714415 + | hypothetical protein TERM 614 714580 - 714598 + F 70 -6.6 -4.13995 | overlap 714582 GATGTTGCGCTCTTT GTCCTGCT GAC GGCAGGTC TTTCCTTTCTAACAC Avi_5690 714627 - 715508 + | HlyD family secretion protein Avi_5691 716523 - 715681 - | fumarylacetoacetate (FAA) hydrolase family protein Avi_5692 717302 - 716568 - | oxidoreductase Avi_5693 718653 - 717517 - | Non-ribosomal peptide synthetase domain-containing protein TERM 615 718753 - 718782 + r 72 -10.7 -2.99319 | opp_overlap 718743 718753 718754 718756, overlap 718775 718776 GGATAGTGAGGACAA TCACGATGAAGCC AAAA GGCCTCGTCGTGG TCTATCTACGACATT TERM 616 718781 - 718754 - R 73 -12 -2.65774 | opp_overlap 718753 718775 718776, overlap 718743 718753 718756 GATAGTGAGGACAAT CACGATGAAGCC AAAA GGCCTCGTCGTG GTCTATCTACGACAT Avi_5694 719620 - 718853 - | hypothetical protein Avi_5696 720504 - 719755 - | calcium-binding protein TERM 617 720262 - 720237 - G 70 -4.6 -4.42386 | gap 1, opp_overlap 720237 720249, overlap 720239 TGTCGATGCAGAAAA GCCGC-CCGAG ATGGG CACGATGCGGC TCTATACTGCCGCAC Avi_5697 722318 - 720612 - | ABC transporter nucleotide binding/ATPase protein (oligopeptide) TERM 618 721194 - 721158 - G 74 -11 -3.53091 | gap 1, opp_overlap 721150 721147 721160, overlap 721186 ATGTGGGTCCTGAAA CACCATGCG-CATTTCC GTAT AGAGATGACGCATGGTG TTGCGCGATGCTTTG TERM 619 721798 - 721778 - G 73 -12.6 -2.79796 | overlap 721758 GCGGATTGCACGACA GCGCCATG GCGAT CATGGCGC GCTGGCGCATGCCGC TERM 620 722072 - 722082 + g 71 -8.2 -4.07568 | overlap 722064 722058 TGGCGATGTCGCGGT CGGC TTT GCCG TTTTCGCCAGCGAGA Avi_5698 723491 - 722328 - | ABC transporter membrane spanning protein (oligopeptide) Avi_5699 724471 - 723488 - | ABC transporter membrane spanning protein (oligopeptide) Avi_5700 726606 - 724690 - | ABC transporter substrate binding protein (oligopeptide) TERM 621 726667 - 726710 + r 100 -14 -4.09519 | opp_overlap 726677 726680, overlap 726671 726677 CTTCGCTGCATTTGC CAGCCGAAAAGAATAGACGC TCCC GGGTCTATTCTTTTCGTCAG TTGTTTCTCACTGCT TERM 622 726671 - 726706 + r 100 -16.4 -2.73799 | opp_overlap 726677 726680, overlap 726667 726677 GCTGCATTTGCCAGC CGAAAAGAATAGACGC TCCC GGGTCTATTCTTTTCG TCAGTTGTTTCTCAC TERM 623 726700 - 726677 - R 77 -8.2 -4.13767 | opp_overlap 726671 726667 726677, overlap 726680 TTTGCCAGCCGAAAA GAATAGACGC TCCC GGGTCTATTC TTTTCGTCAGTTGTT TERM 624 726677 - 726700 + r 81 -8.2 -4.32651 | opp_overlap 726677 726680, overlap 726671 726667 TTTGCCAGCCGAAAA GAATAGACGC TCCC GGGTCTATTC TTTTCGTCAGTTGTT Avi_5701 727623 - 726718 - | 5-dehydro-4-deoxyglucarate dehydratase Avi_5703 727834 - 728574 + | transcriptional regulator GntR family dapE 728657 - 730036 + | succinyl-diaminopimelate desuccinylase celI 730153 - 731040 + | hypothetical protein TERM 625 731401 - 731390 - g 74 -7.2 -4.25848 | AAGCGCCGATGAAAA CGGC ATGC GCCG CGATGTCATCGATCT Avi_5707 731250 - 732773 + | alpha-L-arabinofuranosidase Avi_5708 732821 - 733921 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_5709 733914 - 734864 + | ABC transporter membrane spanning protein (sugar) TERM 626 735238 - 735257 + G 71 -7.2 -4.14472 | gap 1, overlap 735219 GCCGGAGCAGGCGGT TCTGGTTGC CCG GCA-CCAGA TTTTCAGCATGTTGA Avi_5710 734861 - 735703 + | ABC transporter membrane spanning protein (sugar) Avi_5711 735746 - 737092 + | sugar uptake ABC transporter periplasmic solute-binding protein precursor TERM 627 737144 - 737096 - T 77 -6.2 -4.62471 | gap 2, opp_overlap 737105 737106 737108, overlap 737101 737103 737104 GGCAATCTGTAAAAA CAAGATAGGTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-C-TATTTTA CAGTGCCGATACCAG TERM 628 737139 - 737101 - T 72 -8.3 -3.80746 | gap 2, opp_overlap 737105 737106 737108, overlap 737096 737103 737104 TCTGTAAAAACAAGA TAGGTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-C-TA TTTTACAGTGCCGAT TERM 629 737138 - 737103 - T 71 -9 -3.47868 | gap 1, opp_overlap 737105 737106 737108, overlap 737101 737096 737104 TGTAAAAACAAGATA GGTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-CT ATTTTACAGTGCCGA TERM 630 737137 - 737104 - T 76 -12.5 -2.67636 | gap 1, opp_overlap 737105 737106 737108, overlap 737103 737101 737096 GTAAAAACAAGATAG GTGAGCGCCCAAAGCC AAA AGCTTTGGGCGCTG-C TATTTTACAGTGCCG TERM 631 737105 - 737139 + T 83 -10.2 -4.13945 | gap 2, opp_overlap 737104 737103 737101 737096, overlap 737106 737108 TAAAAACAAGATAGG T-G-AGCGCCCAAAGC CAAAA GCTTTGGGCGCTGCTA TTTTACAGTGCCGAT TERM 632 737106 - 737137 + T 100 -15.3 -3.6692 | gap 1, opp_overlap 737104 737103 737101 737096, overlap 737105 737108 AAAAACAAGATAGGT G-AGCGCCCAAAGC CAAAA GCTTTGGGCGCTGC TATTTTACAGTGCCG TERM 633 737108 - 737134 + T 100 -18.1 -2.94337 | opp_overlap 737104 737103 737101 737096, overlap 737106 737105 AAACAAGATAGGTGA GCGCCCAAAGC CAAAA GCTTTGGGCGC TGCTATTTTACAGTG Avi_5713 737618 - 737142 - | 6,7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (Lumazine synthase 2) (Riboflavin synthase 2 beta chain) Avi_5715 737732 - 737953 + | hypothetical protein TERM 634 737962 - 738010 + T 74 -7.6 -4.07568 | gap 2, overlap 737956 AGGTTAGTGGTCCGA TTCCGACATTTGC-CTC-CGTTTG CAG CACCCTCGAGAGCAAATGTCGGAA TTTTCAGGACCACGA Avi_5716 739014 - 738115 - | transcriptional regulator LysR family TERM 635 738750 - 738788 + g 77 -12.4 -3.53811 | opp_overlap 738771 GATTGGCCTTCAGCG TTAGCGATGCGGTGCTGA TAA TCCGCAGCGCATCGCGGA TTTCGCGGGCATAGA ordL 739229 - 740512 + | oxidoreductase Avi_5719 740572 - 742107 + | aldehyde dehydrogenase TERM 636 742156 - 742108 - T 85 -11.8 -3.63515 | gap 1, opp_overlap 742111 742112, overlap 742111 TTCGACGTCGAATAA TCAGTTGCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGA-TAC TTCAATCCTTTACGG TERM 637 742154 - 742111 - T 100 -18.2 -2.93549 | opp_overlap 742111 742112, overlap 742108 GACGTCGAATAATCA GTTGCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGAT ACTTCAATCCTTTAC TERM 638 742111 - 742156 + T 100 -16.4 -3.1634 | gap 2, opp_overlap 742111 742108, overlap 742112 GACGTCGAATAATCA GT-T-GCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGATAC TTCAATCCTTTACGG TERM 639 742112 - 742153 + T 100 -23.9 -2.7795 | opp_overlap 742111 742108, overlap 742111 ACGTCGAATAATCAG TTGCCGCCATACTCCCGGT AGAG ACGGGGAGTATGGCGGCGA TACTTCAATCCTTTA Avi_5720 743030 - 742158 - | oxidoredutase Avi_5722 743446 - 743027 - | hypothetical protein TERM 640 744175 - 744160 - g 73 -3.2 -4.7254 | AGCCCGGATGAAAAA CGGC TTTACGTG GCCG ATACTGGCCGTATGC Avi_5723 743611 - 744501 + | gluconolactonase precursor Avi_5724 745799 - 744522 - | Glycosyl transferase Avi_5725 746946 - 746023 - | DNA-binding HTH domain-containing protein lysA 748729 - 747479 - | diaminopimelate decarboxylase TERM 641 747937 - 747962 + g 79 -12.5 -3.29263 | opp_overlap 747935 747936, overlap 747934 747936 747940 CCGCCGTCAGAAACC GGCCCGGCTCG ATTT CGAGCCGGATC TTGTGGCGCAGATAT TERM 642 747940 - 747959 + g 81 -15 -2.52623 | opp_overlap 747935 747936, overlap 747934 747936 747937 CCGTCAGAAACCGGC CCGGCTCG ATTT CGAGCCGG ATCTTGTGGCGCAGA TERM 643 748843 - 748876 + r 73 -9.5 -3.64236 | gap 1, opp_overlap 748843 748845, overlap 748834 748845 GACATATGGCAAAAA T-ACCGGCGAAGCGCT ACA GGCGCGCCGCCGGTCA TTTGGCAGTTTCAAT TERM 644 748875 - 748843 - R 100 -12.6 -4.65838 | opp_overlap 748843 748834 748845, overlap 748845 GACATATGGCAAAAA TACCGGCGAAGCGC TACAG GCGCGCCGCCGGTC ATTTGGCAGTTTCAA TERM 645 748845 - 748873 + r 86 -13.7 -2.93381 | opp_overlap 748843 748845, overlap 748843 748834 CATATGGCAAAAATA CCGGCGAAGCGCT ACA GGCGCGCCGCCGG TCATTTGGCAGTTTC TERM 646 748873 - 748845 - R 100 -15.2 -3.93817 | opp_overlap 748845 748843 748834, overlap 748843 CATATGGCAAAAATA CCGGCGAAGCGC TACAG GCGCGCCGCCGG TCATTTGGCAGTTTC mdeA 750107 - 748920 - | methionine gamma-lyase TERM 647 749062 - 749083 + g 71 -10.1 -3.53012 | GAAATGCTGAGTGCC GCCTTGGCG GGAA CGACAAGGC TTTCCGGCCCACCCC Avi_5728 751516 - 750104 - | hypothetical protein TERM 648 750674 - 750646 - G 73 -11.8 -3.11291 | gap 1, overlap 750638 GGCAGAAGCCGAAGA CCGGC-AATTGCC CGAA GGCAATCAGCCGG ATGGCAATGGCAATG Avi_5729 752565 - 751516 - | acetylase TERM 649 753466 - 753504 + G 71 -10.2 -3.52963 | overlap 753469 753487 TGTCCTTGCATCCTC TTATCGGCGACCGGTCGG CAC TCGACCGGTTGGCGGTCG ATTTTCTTGTTGGAC TERM 650 753469 - 753501 + G 82 -14.1 -2.88634 | overlap 753466 753487 CCTTGCATCCTCTTA TCGGCGACCGGTCGG CAC TCGACCGGTTGGCGG TCGATTTTCTTGTTG TERM 651 753487 - 753505 + G 100 -10.3 -4.90079 | overlap 753469 753466 GCGACCGGTCGGCAC TCGACCG GTTGG CGGTCGA TTTTCTTGTTGGACT TERM 652 756176 - 756201 + G 82 -13.3 -3.18366 | gap 1, opp_overlap 756159, overlap 756174 756171 CGGGGCGATCTATCT GCGCCGCGACGG CGA CCGTC-CGGTGC TCTATTGCTTCCCGG Avi_5730 753003 - 756986 + | peptide synthetase TERM 653 756978 - 756994 + F 70 -3.6 -4.68908 | opp_overlap 756980, overlap 756980 CTGGCCATTCAAGTC AAGCCG TAATC CGGCTC TTTATTTTCCCTCCC Avi_5731 757042 - 758358 + | L-ornithine N5-oxygenase TERM 654 758461 - 758414 - f 100 -12.3 -4.80453 | gap 1, overlap 758415 758416 758459 CGATGAGAAAACAAA GTCCTATTGCATCGTACAGA TTCCAACGT TCAGTACGATGCAATAGG-C GGGGTCAATGCTGCC TERM 655 758461 - 758415 - f 86 -12.5 -3.47187 | overlap 758414 758416 758459 GATGAGAAAACAAAG TCCTATTGCATCGTACAGA TTCCAACGT TCAGTACGATGCAATAGGC GGGGTCAATGCTGCC TERM 656 758460 - 758416 - f 100 -16 -2.67228 | overlap 758414 758415 758459 ATGAGAAAACAAAGT CCTATTGCATCGTACAGA TTCCAACGT TCAGTACGATGCAATAGG CGGGGTCAATGCTGC pfrI 758734 - 759357 + | sigma factor Avi_5733 759503 - 759976 + | acetylase Avi_5734 760812 - 760027 - | iron reductase Avi_5735 761864 - 760929 - | transcriptional regulator AraC family TERM 657 761236 - 761257 + g 77 -2.3 -5.03314 | gap 1 ATCGTGTCAGGTGCG TGCT-CGC CGATGAA GCGCAGCA TTTTTTCCACATGCA TERM 658 761583 - 761568 - G 74 -7.5 -4.25527 | ATAAAGACAGATAAA GCGGG TGCCTT CCCGC CGGTCGATCACCTGA Avi_5736 762130 - 763362 + | ABC transporter, substrate-binding protein TERM 659 763375 - 763408 + F 100 -13.1 -4.18018 | overlap 763376 TAATCGGTTCTCCCG ACGGCCGGATGTCGC GCAA GTGGCATTCGGCCGA TTTTCAGTCACAGAA TERM 660 763376 - 763407 + F 100 -16.6 -3.10597 | overlap 763375 AATCGGTTCTCCCGA CGGCCGGATGTCGC GCAA GTGGCATTCGGCCG ATTTTCAGTCACAGA Avi_5738 763476 - 764384 + | ABC transporter membrane spanning protein (sugar) TERM 661 765148 - 765175 + G 70 -2.6 -4.77036 | TTCTGCCGGGTCGAT CGTCGCGGCC TTGCCACC GGTCGCCATG TTTTTCCTGATGCAG Avi_5739 764381 - 765235 + | ABC transporter membrane spanning protein Avi_5740 765232 - 767337 + | Alpha-galactosidase TERM 662 767693 - 767678 - g 89 -6.1 -5.1675 | GCACGGACCAAAAAA GCAGC CGAATT GCTGC AACTGGATGCGCTGA Avi_5741 767330 - 768427 + | ABC transporter nucleotide binding/ATPase protein Avi_5742 768427 - 770355 + | beta-galactosidase TERM 663 770391 - 770415 + T 100 -15.1 -3.36878 | opp_overlap 770391 770410, overlap 770407 770408 ATATTGTCGAGAAAA TGCGTCTCCTT TGC AAGGAGGCGCA TTCTCGATGCGTCGC TERM 664 770415 - 770391 - T 100 -12.9 -4.38154 | opp_overlap 770391 770407 770408, overlap 770410 ATATTGTCGAGAAAA TGCGTCTCCTT TGC AAGGAGGCGCA TTCTCGATGCGTCGC Avi_5743 771049 - 770519 - | hypothetical protein soxA 774005 - 771042 - | sarcosine oxidase alpha subunit TERM 665 771092 - 771080 - G 77 -2.6 -5.1356 | TGGGATCAACAAAAA CCGG GCTGA CCAG CTTGGCGGGCGTAAA TERM 666 771459 - 771470 + g 70 -3.6 -4.65895 | overlap 771468 ATTGATTTCATTGTG GGTC ACAT GGCC TTTTTCGATGCGCAG TERM 667 773149 - 773159 + g 71 -6.8 -4.2461 | TCCTCGGCACCCGTG GCCA AAA TGGC TTTCTTCGTCGCAAT TERM 668 773944 - 773920 - G 74 -7.1 -4.26076 | opp_overlap 773920 GTATCGCCAGCAAAA CCGTTCATGGC TTT GCCATCAAAGG TGAAGGCAAGCGCGG soxD 774274 - 774002 - | sarcosine oxidase delta subunit soxB 775536 - 774286 - | sarcosine oxidase beta subunit TERM 669 775424 - 775394 - G 79 -12.5 -3.27525 | overlap 775389 775396 GTTTTGGAAAGGTAA TAGGCGGTGGCCA GCCCA TGGCCACCGCCGC CAACAATCACCACAT TERM 670 775422 - 775396 - G 100 -19.5 -3.20349 | overlap 775394 775389 TTTGGAAAGGTAATA GGCGGTGGCCA GCCCA TGGCCACCGCC GCCAACAATCACCAC TERM 671 775471 - 775483 + g 78 -3.3 -5.06414 | overlap 775472 CTCCGGCTGTCGCCA ATGGG CGG CCCAG TTTTTATTGCCACGA TERM 672 775527 - 775515 - G 79 -5.5 -4.83615 | GACCGTTCAGAAAAA TCGAC AAA GCCGA ATAGCGCATGATGCC glxA 775665 - 776618 + | transcriptional regulator AraC family Avi_5748 776659 - 777318 + | transcriptional regulator purF 777408 - 778313 + | amidophosphoribosyltransferase fwdC 778324 - 779010 + | formyl-methanofuran dehydrogenase TERM 673 779085 - 779068 - f 83 -5.5 -5.0538 | overlap 779069 TGCGAGCGCAAAAAA GTGGGGT CCTG ACCCCAG GAGATCGCTATGAGC TERM 674 779084 - 779069 - f 73 -9 -3.62746 | overlap 779068 GCGAGCGCAAAAAAG TGGGGT CCTG ACCCCA GGAGATCGCTATGAG TERM 675 779922 - 779907 - g 78 -9 -4.18018 | opp_overlap 779913 TGTGTTTATCGAAAA TGTCGG CATG CCGACA CTGGCCTGTATTCGC TERM 676 780143 - 780127 - g 74 -2.2 -4.89233 | gap 1, opp_overlap 780135, overlap 780128 780129 GAGGAATATCAAAAA CTCGGCA CCAC CGCCG-G CGCTTATGATGACTG gltB 779095 - 780423 + | glutamate synthase large subunit TERM 677 780403 - 780417 + F 70 -7 -4.14739 | opp_overlap 780396, overlap 780404 GGCACCAACTGGTAT CCCGGC AAA GCCGGA TTTTAACATCCATGG TERM 678 780404 - 780416 + F 72 -10.5 -3.08522 | opp_overlap 780396, overlap 780403 GCACCAACTGGTATC CCGGC AAA GCCGG ATTTTAACATCCATG TERM 679 780431 - 780459 + F 74 -7.4 -4.06502 | overlap 780447 GATTTTAACATCCAT GGCCGCGC AAACCTCCCAAGG GCGCGGCC TTTCCTTTCAACATG glnA 780505 - 781812 + | glutamine synthetase tphA 783201 - 781855 - | MFS permease TERM 680 782550 - 782538 - G 76 -4.8 -4.7373 | GCATCTCAGCAAAAA CAGG GGTTT CCTG AAGCCAGCGGCGCAG lldA 784462 - 783302 - | L-lactate dehydrogenase TERM 681 784582 - 784554 - R 72 -7.4 -3.92869 | gap 1, opp_overlap 784557, overlap 784556 784557 784559 GTAGCCATTCACAAA GAGGACCGCCCAG ATTG CTGGACGG-CCTT TAAACTGTGTCGCGC TERM 682 784580 - 784556 - R 74 -10 -3.55378 | gap 1, opp_overlap 784557, overlap 784554 784557 784559 AGCCATTCACAAAGA GGACCGCCCAG ATTG CTGGACGG-CC TTTAAACTGTGTCGC TERM 683 784580 - 784557 - R 77 -12.4 -2.72745 | opp_overlap 784557, overlap 784556 784554 784559 GCCATTCACAAAGAG GACCGCCCAG ATTG CTGGACGGCC TTTAAACTGTGTCGC TERM 684 784578 - 784559 - R 75 -11.4 -2.90511 | opp_overlap 784557, overlap 784556 784557 784554 CATTCACAAAGAGGA CCGCCCAG ATTG CTGGACGG CCTTTAAACTGTGTC Avi_5755 785883 - 784606 - | ABC transporter substrate binding protein (sugar) TERM 685 784730 - 784740 + g 89 -2.4 -5.79595 | ATCTGCTGGTAAAGC GCCG AGC CGCC TTTTTTCTTTTCAAA TERM 686 786487 - 786525 + G 71 -7.5 -4.20531 | overlap 786490 GCGGATCTGGGTGAA TGGCG-CGGAGCAGGTTCG CTT CGAACC-GTTCCGGCGTAA TTTTGAATCCATGTC TERM 687 787146 - 787194 + G 75 -9.6 -3.89131 | gap 1, opp_overlap 787146 787160, overlap 787148 787192 CAGTGCTGGAGAAAC TCCTGAGCGATACACTCGCCG CCATCGAC CGGCGGGAGGATTGCTC-GGA TTTCGTCCTTGTTCC TERM 688 788338 - 788369 + G 72 -5.8 -4.5442 | gap 1, overlap 788345 GGGCTGGGTGGCCAT TGTCGGA-GCCGGGG ACG CGCCGGCTTTCGAGA TTTTCTGCTTGAAAG TERM 689 788345 - 788361 + G 72 -9.3 -3.67737 | overlap 788338 GTGGCCATTGTCGGA GCCGGGG ACG CGCCGGC TTTCGAGATTTTCTG TERM 690 788562 - 788577 + G 71 -10.4 -3.55378 | overlap 788560 GCGCCCAACCGGATC GGGGTG AAAT CACCCC TCTTTATCAGTAGAT Avi_5757 786074 - 788590 + | hypothetical protein TERM 691 789011 - 788977 - g 78 -6.4 -4.56775 | overlap 788979 ATGGCTGGTGAAAAA CCTGCCGAAAACCG AGGATGG CGGCTTCCAGCATG TGGTCAAGGAACGCC TERM 692 789248 - 789217 - g 75 -12.3 -3.28924 | gap 1, opp_overlap 789244 789247 TATCGGTCGTCATAA CTTTG-CCCGCGCC TTCTG GGCGCGGGGCAATG CCTGGATCACCGTGG Avi_5758 788603 - 789697 + | hypothetical protein Avi_5759 789772 - 791022 + | polygalacturonase Avi_5760 791046 - 792164 + | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 693 792552 - 792577 + G 83 -8.3 -4.57073 | gap 1, overlap 792557 792569 792570 TCACGGCGCTGATCC TCAACCGCGCCA TGG TGGCGCG-TGGA TTTTTCCGGGCGATG TERM 694 792557 - 792573 + G 76 -13.7 -2.83903 | overlap 792552 792569 792570 GCGCTGATCCTCAAC CGCGCCA TGG TGGCGCG TGGATTTTTCCGGGC Avi_5762 792206 - 793150 + | ABC transporter membrane spanning protein (sugar) Avi_5763 793152 - 794204 + | ABC transporter membrane spanning protein (sugar) purR 795232 - 794219 - | transcriptional regulator LacI family TERM 695 795209 - 795233 + g 79 -6.9 -4.60487 | CGAGGCGGTGCTGAT CGAGACGCCGG CGT CCAGCGCCACG TTTTTCAGGCTGATC Avi_5766 796454 - 795318 - | Patatin-like phospholipase domain-containing protein TERM 696 796571 - 796605 + r 100 -16.5 -3.78934 | opp_overlap 796576, overlap 796574 796576 GCTCTGCTTCATTCA TGAGATCCGTGCGCC GGTAA GGCGCACGGATCTGG TTATTATCAGGCGGC TERM 697 796574 - 796602 + r 100 -20.4 -2.98545 | opp_overlap 796576, overlap 796571 796576 CTGCTTCATTCATGA GATCCGTGCGCC GGTAA GGCGCACGGATC TGGTTATTATCAGGC TERM 698 796576 - 796600 + r 100 -17.2 -3.04443 | opp_overlap 796576, overlap 796574 796571 GCTTCATTCATGAGA TCCGTGCGCC GGTAA GGCGCACGGA TCTGGTTATTATCAG TERM 699 796600 - 796576 - R 100 -17.2 -2.80816 | opp_overlap 796576 796574 796571 GCTTCATTCATGAGA TCCGTGCGCC GGTAA GGCGCACGGA TCTGGTTATTATCAG adhP 797640 - 796612 - | alcohol dehydrogenase TERM 700 797724 - 797762 + r 81 -8.9 -4.30987 | gap 1, overlap 797720 GGACCCTAGTGCAGG GCGGGGC-GATTGCTTTT GATT GATATCAATCCGCCCCGC TTTGTTGTGGCAGGT dlhH 798669 - 797782 - | carboxymethylenebutenolidase TERM 701 798758 - 798702 - R 100 -15.4 -4.13767 | gap 1, opp_overlap 798711, overlap 798685 798706 798711 TTGTCCAGTCTAAAA GATAGAAAACCCGAACCGGCATCCAAT GTTC ATGGGAGGCCAATCCGGGTTTTC-ATC AACACTTATTCGTGA TERM 702 798755 - 798706 - R 100 -17.3 -3.41366 | opp_overlap 798711, overlap 798685 798702 798711 CCAGTCTAAAAGATA GAAAACCCGAACCGGCATCCAAT GTTC ATGGGAGGCCAATCCGGGTTTTC ATCAACACTTATTCG TERM 703 798750 - 798711 - R 100 -11.4 -4.78933 | opp_overlap 798711, overlap 798685 798706 798702 CTAAAAGATAGAAAA CCCGAACCGGCATCCAAT GTTC ATGGGAGGCCAATCCGGG TTTTCATCAACACTT guaB 800384 - 798786 - | inosine-5`-monophosphate dehydrogenase oxyR 801364 - 800441 - | transcriptional regulator LysR family TERM 704 800917 - 800870 - G 73 -3.2 -4.72986 | CACGGCCATGAAAAA CCGATCGACGAGCAGGCTGCGG CAGA CCAGAGCGTCCGCATCCACCGG TAGCGCCGCGACGAC TERM 705 801372 - 801408 + H 80 -12 -3.30243 | gap 1, opp_overlap 801372 801380, overlap 801370 GTCAGCATGATAGGA TTTCCAAATCGTATTTA AAAA TAAATACGA-TTGGAAA TTATCGGCCGTCAAT TERM 706 801408 - 801372 - H 73 -12 -2.67515 | gap 1, opp_overlap 801370 801372, overlap 801380 GTCAGCATGATAGGA TTTCCAAATCGTATTTA AAAA TAAATACGA-TTGGAAA TTATCGGCCGTCAAT TERM 707 801743 - 801703 - H 78 -10.5 -3.53444 | gap 1, opp_overlap 801703 801705, overlap 801704 GTATCTGTTTCGAAA GGGGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGAC-CCCCT GTTTTGTATGGGTTT TERM 708 801703 - 801744 + H 100 -11.6 -4.59081 | opp_overlap 801703 801704, overlap 801705 GTATCTGTTTCGAAA GGGGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGACCCCCTG TTTTGTATGGGTTTA TERM 709 801742 - 801704 - H 85 -14 -2.71924 | gap 1, opp_overlap 801703 801705, overlap 801703 TATCTGTTTCGAAAG GGGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGAC-CCCC TGTTTTGTATGGGTT TERM 710 801705 - 801742 + H 100 -16.4 -3.89301 | opp_overlap 801704 801703, overlap 801703 ATCTGTTTCGAAAGG GGGCGTCAGAAGCCGT TTTGAT ACGGTTTCTGACCCCC TGTTTTGTATGGGTT Avi_5773 801869 - 802495 + | transcriptional regulator TetR family Avi_5774 803546 - 802548 - | transcriptional regulator LysR family TERM 711 802827 - 802817 - G 70 -4.6 -4.45168 | overlap 802818 CCGGCAAAACAGAAA CGGC CAA GCCA GCCAGCACTGCGGCG TERM 712 803428 - 803396 - G 72 -9.7 -3.65351 | opp_overlap 803394 GCATCTGCATGGAAA CGGCTGATTGGGTCT TGA AGACCCGCCCTGCCG CCTTGGTAAAACTGC Avi_5775 803728 - 804027 + | hypothetical protein TERM 713 804086 - 804114 + T 100 -15.4 -5.71712 | gap 1, overlap 804081 804087 ATCGGCCCTGCTTTT G-CCCGGCAACAG TTCA CTGTTGCCGGGTC TTTTTTTGTGTGCCG TERM 714 804087 - 804112 + T 100 -19.1 -4.50122 | overlap 804081 804086 TCGGCCCTGCTTTTG CCCGGCAACAG TTCA CTGTTGCCGGG TCTTTTTTTGTGTGC Avi_5777 805062 - 804163 - | hypothetical protein Avi_5779 806708 - 805335 - | glutamate--cysteine ligase TERM 715 805964 - 805954 - G 76 -4.6 -4.82756 | overlap 805949 ACATAATCAATAAAA CCGA AAT CCGG TTTGAACACGAAGGG TERM 716 806723 - 806733 + r 77 -3.2 -5.09259 | TGAAGCCGACCTTGT TCTG CTA CAGG TTTTATTTTCGCATC TERM 717 806747 - 806781 + r 84 -13.6 -2.52543 | GGTTTTATTTTCGCA TCGGGCCGAAAACCGG TTT CCACTTTTCGGTCCGA TGCGTTACCGAGGGT Avi_5780 807624 - 806887 - | hypothetical protein pit 809146 - 807644 - | phosphate permease Avi_5783 809982 - 809494 - | NTP pyrophosphohydrolase MutT family TERM 718 809946 - 809917 - G 74 -11.5 -3.56594 | opp_overlap 809921, overlap 809908 GCAAAGCGCGGCAAA TTGCTGCTTCGGC GGGC GCCGAAACATCAA TTCCAAATCCGACAC TERM 719 811069 - 811089 + G 72 -9.7 -3.6608 | GCAACTTCTCCAGGA TCTTGCCGT GAA GCGGCAGGA TTTCGATGAGGTGAT Avi_5784 810440 - 811846 + | hypothetical protein TERM 720 813112 - 813100 - g 70 -4.1 -4.57569 | CTATGTTTTGAAAAA GACCT CGG AGATC ATTGACCGTTACGGC TERM 721 813311 - 813325 + G 75 -8.6 -4.08945 | opp_overlap 813304, overlap 813322 ATCGAAAAGCGCGAC CTGATG CGC CATCAG TTTTCCAAGGCTGAT glcD 811997 - 813430 + | glycolate oxidase subunit GlcD TERM 722 813679 - 813693 + G 74 -11.4 -3.53091 | opp_overlap 813679 GCGGTGACTGAGAAA GGCCAG TCG CTGGCC TTTGAACCGCCGGAT TERM 723 813693 - 813679 - g 81 -11.4 -3.91897 | opp_overlap 813679 GCGGTGACTGAGAAA GGCCAG TCG CTGGCC TTTGAACCGCCGGAT glcE 813427 - 814644 + | glycolate oxidase subunit glcF 814683 - 815978 + | glycolate oxidase iron-sulfur subunit TERM 724 816507 - 816471 - g 73 -11.7 -3.17075 | opp_overlap 816471 816474 GCGCCCGCAAGGCAA CAC-CCATCCCGCTGCC GCAGT GG-AGCGGGATGGTGCG TTGAATTGCAAACGT TERM 725 816474 - 816503 + G 81 -15.1 -2.57013 | gap 1, opp_overlap 816471, overlap 816471 CCCGCAAGGCAACAC CCATCCCGCTGCCG CAG TGG-AGCGGGATGG TGCGTTGAATTGCAA Avi_5790 816118 - 816528 + | hypothetical protein Avi_5791 817265 - 816555 - | glutathione S-transferase Avi_5793 817432 - 817878 + | hypothetical protein TERM 726 817981 - 817956 - T 100 -12.5 -4.40003 | opp_overlap 817957, overlap 817957 CGGGATAAATACAAA GGCCCGCCGGA GCGA TCCGACGGGCT TTTTGCTTTGAACGG TERM 727 817957 - 817980 + T 100 -13.8 -4.98531 | opp_overlap 817957 817956 GGGATAAATACAAAG GCCCGCCGGA GCGA TCCGACGGGC TTTTTGCTTTGAACG TERM 728 817980 - 817957 - T 100 -16 -3.23279 | opp_overlap 817957, overlap 817956 GGGATAAATACAAAG GCCCGCCGGA GCGA TCCGACGGGC TTTTTGCTTTGAACG TERM 729 818396 - 818410 + T 77 -2.9 -5.09895 | opp_overlap 818396 TTATTATGATTGAAA TATCA TTATT TGATA TTTTTTCCATAAATA TERM 730 818630 - 818655 + T 76 -7.5 -4.25566 | opp_overlap 818630 TTTTTCCGAAAAAAA GCCCAGCGTCT ATTC AGACCCTGAGC TTTTACGTCATTATT TERM 731 818655 - 818630 - T 100 -9.7 -5.40072 | opp_overlap 818630 TTTTTCCGAAAAAAA GCCCAGCGTCT ATTC AGACCCTGAGC TTTTACGTCATTATT hisG 819415 - 818723 - | ATP phosphoribosyltransferase hisS 820533 - 819415 - | histidyl-tRNA synthetase TERM 732 819547 - 819534 - G 78 -9.5 -4.09685 | opp_overlap 819521 CGCCACCGGCCAAAA CGGCG GTTT CGCCG GAGAGCGCCACTTCA TERM 733 820745 - 820729 - R 72 -8.7 -3.72788 | CTCCAGAATAGAGAA CCTACCA GTT TGGCAGG GAAAAGTGGACCCCG Avi_5796 821210 - 820860 - | hypothetical protein TERM 734 820949 - 820938 - G 71 -7.2 -4.25104 | opp_overlap 820925 820947 CTCCGCGCAGCAAAA GCGG TTTC CCGC AGCCTCACGATGAGG TERM 735 821180 - 821202 + g 70 -2.7 -4.84274 | gap 1, overlap 821182 821198 AGACGGTTGACAGCC GGTCGAA-CC ACGA GGCTTCGAGC TTTTTCATCTCGTTC TERM 736 821408 - 821428 + r 86 -14 -2.88999 | CTCGGCATTTCGTCA CCCTCGGG CTTGT CCCGAGGG TCTGCTGTCTCCGAA Avi_5797 821988 - 821548 - | hypothetical protein TERM 737 822054 - 822015 - H 91 -11.4 -4.09685 | overlap 822019 822020 TCCCACGCTTGAAAA CCAAGCGATCGCCAGAGA ACGG TCTCTGGCGATCGGGGAG GTAGAAAAGCCGCAC TERM 738 822050 - 822019 - H 100 -17.4 -3.67175 | overlap 822015 822020 ACGCTTGAAAACCAA GCGATCGCCAGAGA ACGG TCTCTGGCGATCGG GGAGGTAGAAAAGCC TERM 739 822049 - 822020 - H 100 -20.9 -2.79823 | overlap 822019 822015 CGCTTGAAAACCAAG CGATCGCCAGAGA ACGG TCTCTGGCGATCG GGGAGGTAGAAAAGC TERM 740 822167 - 822201 + H 95 -13.7 -3.51934 | gap 1, opp_overlap 822164, overlap 822165 CATATAGACATAGCC CACCGCCTCAGCCACA AACC TATGGCTGAGG-GGTG TCTTTATAACGACCG TERM 741 823111 - 823099 - H 76 -10.5 -3.35813 | CTGCATGGGAACCAA CCGGC GAG GCCGG CTGGTAAGTGCCTGA TERM 742 823158 - 823177 + G 100 -15 -5.02502 | TATTATGATGTTGCG GCGGTCGG AATT CCGACCGC TTTTTCTATAGTCTG TERM 743 823254 - 823227 - g 73 -12.8 -2.72626 | gap 1, opp_overlap 823212, overlap 823226 823215 GAACAGCCAGACAAG CCAGGGCAGGATC TGC GACCCTGCC-TGG TCAGGCGATCCTTTA TERM 744 823456 - 823466 + G 79 -6.8 -4.56597 | TTCTTCGGTTGGCTT GGAC TCG GTCC TTTTTCGGACCGGAC Avi_5800 823119 - 823568 + | hypothetical protein TERM 745 823652 - 823626 - T 100 -12.4 -4.34402 | overlap 823627 TTCGGCAGAGTAAAA TTTAGAGCATCG GTC CGATGCTCTAAC ATAGTACACGACGCA TERM 746 823651 - 823627 - T 100 -15.9 -3.2032 | overlap 823626 TCGGCAGAGTAAAAT TTAGAGCATCG GTC CGATGCTCTAA CATAGTACACGACGC TERM 747 823700 - 823747 + T 79 -4.9 -5.00196 | gap 3, opp_overlap 823734, overlap 823702 TTTACCCCCTCATCC CCCTGCC-GGGA-C-CTTCTCCCC GCT GGGGAGAAGAGATGCGAGGCAGCG TTTTGTTCTTTCAAC hisS 825620 - 823968 - | histidyl-tRNA synthetase TERM 748 824363 - 824376 + g 70 -3.7 -4.57073 | TCACCTCGTCAGCAC CCAGC TTGC GCAGG TTTTTCAAGGCCGTC TERM 749 825240 - 825252 + g 85 -10.5 -4.4078 | opp_overlap 825228 GAACTGGCGGAAGCG GCCCG GAC CGGGC TTTTCATTGCGGAAC TERM 750 825583 - 825600 + g 78 -4.1 -4.98616 | gap 1, overlap 825585 825586 CCACGCGGCAGGCGG GCTCTCAG TTT CTGGG-GC TTTTTGGTCTTTTCG Avi_5802 825733 - 826497 + | hypothetical protein Avi_5803 826535 - 827644 + | hypothetical protein TERM 751 827741 - 827779 + F 86 -12.5 -3.55444 | gap 1, overlap 827747 CTCTGGCTTATGCTG CCATGCCCGTCAGCGGCA TGGC TGCCACTGGCGG-TATGG TTTCGCCGATGACGA TERM 752 827747 - 827774 + F 83 -13.4 -3.00704 | overlap 827741 CTTATGCTGCCATGC CCGTCAGCGGCA TGGC TGCCACTGGCGG TATGGTTTCGCCGAT TERM 753 828240 - 828221 - g 83 -12.2 -3.82665 | GAGGACACTATGAAA GGCATGGA CCAT TCCATGCC GTCGAATACGACGTC Avi_5806 828146 - 828514 + | hypothetical protein TERM 754 829066 - 829046 - g 70 -2.4 -4.82901 | opp_overlap 829047 829051, overlap 829047 CGTCTCCGATAAAAA CGCCACCA CCTAT CGGCGGCT TTTTTCAAAGCACGG TERM 755 829047 - 829065 + G 76 -3 -5.00616 | opp_overlap 829046 829047, overlap 829051 GTCTCCGATAAAAAC GCCACC ACCTATC GGCGGC TTTTTTCAAAGCACG Avi_5807 828585 - 829286 + | hypothetical protein tag 829922 - 829275 - | 3-methyladenine-DNA glycosylase TERM 756 830751 - 830762 + G 71 -7.2 -4.21607 | CGGAAAATCCATTGG GCGC ACGG GCGC TTTATCTTGGCTCGA Avi_5810 830117 - 830917 + | hypothetical protein Avi_5811 831072 - 831743 + | hypothetical protein Avi_5812 834644 - 831960 - | transcriptional regulator LuxR family TERM 757 832426 - 832447 + g 70 -4.4 -4.50193 | overlap 832435 TCGAGAAGCGCCAGT TCCACGCT GCGAAG ATCGTGGA TTTTCGTTAGTTGCT Avi_5813 835520 - 834786 - | phosphopantetheinyl transferase Avi_5814 836141 - 835584 - | hypothetical protein TERM 758 836778 - 836800 + G 76 -13.4 -2.73771 | overlap 836777 CCCGTTAGTACCGCG CTCGGCGTGC TGG GCATGCCGGG ATTTACCGCCTATGC TERM 759 836988 - 836975 - g 70 -2.4 -4.72272 | overlap 836958 CGCTTTTATCAAAAA CGAA CTCGGT TTCG ATGCGGTGGTCGATC Avi_5815 836406 - 837431 + | quinone oxidoreductase Avi_5816 837926 - 837444 - | acetyltransferase TERM 760 837966 - 837947 - R 100 -10.7 -5.10163 | opp_overlap 837946 837957 AACCTCAAAAGAAAA GCAGGCC ATTTCG GGCCTGC CTGATATGTCGCTGA Avi_5817 838588 - 838010 - | hypothetical protein TERM 761 838848 - 838820 - R 77 -10.3 -3.63991 | overlap 838821 838823 CACCATCCTGAATAA TTATCAGGCGGCA TCT TCCCGCCTGATAG AAAATTCCGGCCAAT TERM 762 838847 - 838821 - R 85 -13.8 -2.78073 | overlap 838820 838823 ACCATCCTGAATAAT TATCAGGCGGCA TCT TCCCGCCTGATA GAAAATTCCGGCCAA TERM 763 838845 - 838823 - R 75 -12 -2.93549 | overlap 838821 838820 CATCCTGAATAATTA TCAGGCGGCA TCT TCCCGCCTGA TAGAAAATTCCGGCC ileS 841888 - 838925 - | isoleucyl-tRNA synthetase TERM 764 841635 - 841613 - G 72 -9.8 -3.74747 | GTAATTGCTATCAAA CCCGCGCATC TGG AATGAGCGGG TGATCACGTCTTTGA TERM 765 841706 - 841720 + g 70 -4.2 -4.56597 | overlap 841707 GGCGTAGGGAGGGCC ATCGTG CAG CACGAA TTTTTCGCGGCCAGC TERM 766 842016 - 841975 - R 100 -16 -4.13282 | gap 3 AGCACACGCCGAAAA CCCGGACCCTCCG-GCTGCTC CTA GAGC-GCGCGGAAGG-CCGGG CCAATAATTCGCCCG TERM 767 842368 - 842328 - R 78 -11.1 -3.52204 | gap 1, opp_overlap 842355, overlap 842331 GCACCGTCAAACGAA GCACCACCAGCGAGTCGG TAGAAG CCGCCGCGCTGGTGG-AC AATCTCACGCCCGCG TERM 768 842366 - 842331 - R 100 -16.1 -2.89569 | opp_overlap 842355, overlap 842328 CCGTCAAACGAAGCA CCACCAGCGAGTCGG TAGAAG CCGCCGCGCTGGTGG ACAATCTCACGCCCG Avi_5820 843848 - 842373 - | monocarboxylic acid permease Avi_5821 844035 - 843838 - | hypothetical protein Avi_5822 844437 - 844168 - | hypothetical protein TERM 769 844489 - 844459 - R 77 -12.8 -2.76322 | opp_overlap 844459 844465, overlap 844461 844464 TGACTGAAGAGATTA TACAAGGAGTCATT GAA AATGACTCTTTGTA TTCCTTTTGAAAATA TERM 770 844459 - 844489 + r 100 -15 -3.67622 | opp_overlap 844459 844461 844464, overlap 844465 TGACTGAAGAGATTA TACAAGGAGTCATT GAA AATGACTCTTTGTA TTCCTTTTGAAAATA TERM 771 844487 - 844461 - R 71 -11 -2.92442 | opp_overlap 844459 844465, overlap 844459 844464 ACTGAAGAGATTATA CAAGGAGTCATT GAA AATGACTCTTTG TATTCCTTTTGAAAA TERM 772 844465 - 844483 + r 90 -10.4 -4.3341 | opp_overlap 844464 844461 844459, overlap 844459 AAGAGATTATACAAG GAGTCATT GAA AATGACTC TTTGTATTCCTTTTG TERM 773 844496 - 844538 + r 84 -7.4 -4.62069 | CTCTTTGTATTCCTT TTGAAAATATCTCAAG CCTCTGACGCA TTTGAGATATTTTCAA TTTTTCAAGTCGAGG dapA 845492 - 844581 - | dihydrodipicolinate synthase Avi_5824 845925 - 845515 - | hypothetical protein ribF 847266 - 846286 - | riboflavin biosynthesis protein RibF TERM 774 847144 - 847100 - G 78 -9.9 -4.08216 | opp_overlap 847107 847109 847143, overlap 847104 847110 GGATGCGGCTCAAAA GTCAGAACCAGTGCGGGAACG CCG CGTTGCCGCGCCAGTTCCAGC GCGCGTTCTAGCACG TERM 775 847140 - 847104 - G 76 -13.7 -2.74605 | opp_overlap 847107 847109, overlap 847100 847110 GCGGCTCAAAAGTCA GAACCAGTGCGGGAACG CCG CGTTGCCGCGCCAGTTC CAGCGCGCGTTCTAG TERM 776 847232 - 847206 - G 75 -10 -3.65522 | opp_overlap 847203 TACCGATGGCAACAA CGCCGCCCTTCA GGC TGTCGGGCAGCG GGGTCTTCTTTTCAT Avi_5827 848130 - 847279 - | hypothetical protein Avi_5828 849628 - 848237 - | chromate transport protein chrA TERM 777 849701 - 849728 + H 75 -12 -2.96695 | gap 1, opp_overlap 849700 849699 849697, overlap 849699 849703 AGTGCTAACAATATC CATGCG-GGGCCG TTT CGGCCCGCGAATG TCATTTGATCGAGGG groES 849752 - 850048 + | 10 KD chaperonin (protein CPN10) TERM 778 851124 - 851102 - g 82 -8.4 -4.46615 | overlap 851105 CATCACCAAGGAAAA CACCACCATC GTT GATGGCGCTG GTCAGAAGTCCGACA groEL 850116 - 851759 + | chaperonin TERM 779 851812 - 851831 + F 100 -15 -4.49756 | TTCAGACTCTCTGAA GGGCGGCT TTAA AGCCGCCC TTTTGCTGTTTAAAA Avi_5832 852346 - 852762 + | hypothetical protein TERM 780 852946 - 852965 + F 77 -11.4 -3.1855 | overlap 852958 TGGCCTGAATTGGCA CCCTACCC GAAC GGGTGGGG TTGGGTCTTGCAACC TERM 781 853317 - 853333 + G 72 -5.1 -4.63218 | overlap 853291 CCGTTTCGGGGCGGA TATGGCC GAT GGCGATA TTTTGTTGACCAACG hyuB 853063 - 854754 + | hydantoin utilization protein TERM 782 855877 - 855891 + G 82 -6.4 -4.72986 | CGCTAACAGATGCAT TGCTGA CGC TCGGCA TTTTTGATCCCGCTA hyuA 854751 - 856814 + | hydantoin utilization protein TERM 783 857462 - 857478 + G 89 -6.5 -5.14563 | opp_overlap 857458 GCAGGATCGAACAGC TTGGCCG GCC CGACCAA TTTTTTCATGCGCCC TERM 784 857793 - 857822 + G 83 -13.7 -3.57144 | gap 1 AGACGGGCAGACCTT GACGGCG-ATCTGT GAT GCAGATGCGCCGTC TTTGACCGTCGGGCA potG 856816 - 857910 + | ABC transporter nucleotide binding/ATPase protein (putrescine) TERM 785 858188 - 858169 - g 87 -9.3 -4.59109 | GATATCGGTGAAAAA TGGGTGG AATTTG CCACCCA AAATGGTGTAAAGCC Avi_5836 857977 - 859155 + | ABC transporter substrate binding protein (spermidine/putrescine) TERM 786 859212 - 859269 + F 84 -7.4 -4.68919 | gap 3, opp_overlap 859218 859220, overlap 859213 859219 TCTGTGGTTTTGGGG CA--TAAATACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG-ATTCGCTTG TTTTCGTTTGTCTTT TERM 787 859213 - 859266 + F 100 -12.7 -4.40882 | gap 1, opp_overlap 859218 859220, overlap 859212 859219 CTGTGGTTTTGGGGC ATAAATACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG-ATTCGC TTGTTTTCGTTTGTC TERM 788 859261 - 859218 - f 100 -19.2 -3.85698 | gap 1, opp_overlap 859213 859212 859219, overlap 859220 GTTTTGGGGCATAAA TACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG-A TTCGCTTGTTTTCGT TERM 789 859219 - 859261 + F 100 -20.8 -3.38158 | opp_overlap 859218 859220, overlap 859213 859212 TTTTGGGGCATAAAT ACTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAGA TTCGCTTGTTTTCGT TERM 790 859260 - 859220 - f 100 -24.3 -3.51934 | opp_overlap 859219 859213 859212, overlap 859218 TTTGGGGCATAAATA CTAGAGTCTGTCAGGTTCA TAT TGAACCAGACAGACTCTAG ATTCGCTTGTTTTCG TERM 791 859331 - 859359 + F 72 -10.9 -2.99473 | opp_overlap 859330 859326 859327 AAACTCTAAAGCCAG CCTATCGCCGTGT TTC GCCCGGCGACAGG TCTCTGATGATTTGA Avi_5839 859454 - 860320 + | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 792 860569 - 860530 - g 70 -12.3 -2.70932 | opp_overlap 860523 860534 860559 860560, overlap 860557 GCCCTTTGGCAATCA GCCAGCGTTGC-CCTGTTG ACGG CAACAGGCGCCACGCT-GC TATCGCTTATGGCGG TERM 793 860534 - 860566 + G 71 -12.8 -2.67705 | gap 1, opp_overlap 860530 860557, overlap 860523 860559 860560 TTTGGCAATCAGCCA GCGTTGC-CCTGTTG ACGG CAACAGGCGCCACGC TGCTATCGCTTATGG potI 860317 - 861114 + | ABC transporter membrane spanning protein (putrescine) metF 862011 - 861121 - | methylenetetrahydrofolate reductase TERM 794 862350 - 862335 - g 75 -10.4 -3.741 | opp_overlap 862308, overlap 862312 862333 CCAATATGGAAAAGA TCGCGC TTCT GCGCGA GACCTCCGGTGCCAA TERM 795 862674 - 862684 + G 74 -8.2 -4.11484 | overlap 862661 TTGACCTAGCCGATC CGGC CCG GCCG TTTTCGCGGCTTGGG TERM 796 862849 - 862823 - g 71 -10.8 -3.61654 | GACATCGAGGCGAAA TTCGGCTCGCTG CTG CATCGTGCCGAA TGGGTCAGCCTCGGT nspC 862274 - 863371 + | carboxynorspermidine decarboxylase TERM 797 863374 - 863361 - f 76 -8.1 -4.16842 | opp_overlap 863361 CGGACTTTGAACAAA GCCTC TCTT GAGGC TTCTGACGATTGGAC TERM 798 864587 - 864539 - g 75 -5.9 -4.65916 | opp_overlap 864557 864558, overlap 864541 GGGACGTGAAGAAAA TGGCCAATGTCGAGGAACTGCCG CCA CGGCCTTTCCTCAACATCCTCAA CCATATCGGCCTGCC Avi_5844 863410 - 864651 + | hypothetical protein Avi_5845 866456 - 864720 - | biotin carboxylase Avi_5847 868102 - 866477 - | hypothetical protein TERM 799 866678 - 866695 + g 79 -12.7 -3.18199 | overlap 866658 ATGCGGCACCTGAAT GGCACCG GTGG CGGTGCC TTCGCTTGGCAGTTC Avi_5849 868916 - 868110 - | hypothetical protein TERM 800 869035 - 868990 - R 95 -7.1 -5.45802 | gap 1, overlap 869027 TGCGTAAAACAAAAA CTTAAAGCGTGTTGCTTG AGGCTGATAAG CC-GCAACACGCTTTAAG CAGTTACAAATGGCT Avi_5851 869795 - 869031 - | hypothetical protein Avi_5852 871107 - 869830 - | hypothetical protein TERM 801 871191 - 871201 + H 76 -4 -4.96388 | opp_overlap 871191 ACAATTCCGTCAATA TTGT TGA ACAA TTTTATTTGATCGTT TERM 802 871466 - 871445 - g 81 -4.3 -5.07486 | overlap 871446 GACTGGTAACAAAAA TCCGCGATC AACT GATCGCCGG GGAGTTGAAGCCGGG Avi_5853 871393 - 872058 + | transcriptional regulator GntR family putR 872523 - 872059 - | transcriptional regulator AsnC family TERM 803 872454 - 872467 + g 76 -4.5 -4.82901 | overlap 872455 CGGCCAGTTCGGCAT TGGTC AGAC GACCG TTTTTCTGCAACAGG Avi_5856 872686 - 873699 + | 1-aminocyclopropane-1-carboxylate deaminase TERM 804 873735 - 873717 - T 81 -13.1 -2.65264 | opp_overlap 873708, overlap 873702 CCATCAGGTAGACGA CCGGCCC GAAAA GGGCCGG TCCGTAAACATGTTA Avi_5857 874230 - 873748 - | hypothetical protein Avi_5858 875441 - 874503 - | acetyltransferase TERM 805 876378 - 876406 + G 85 -10.2 -4.38712 | overlap 876363 GCGGCGTTGCTGGCT GCGCTCGAGAGC GGCCA GCTCGCCAGCGC TTTTCTCGACGTCAC Avi_5861 875679 - 876602 + | 2-hydroxyacid dehydrogenase TERM 806 876739 - 876717 - g 75 -9.8 -3.84017 | opp_overlap 876717 TAATCTCAAAGACAA GACCTTGCTG CGC CAGCAGGGCC TGATTGGCGGCGAAT attK2 876697 - 878154 + | succinate semialdehyde dehydrogenase Avi_5863 879084 - 878185 - | Transcriptional regulator Avi_5865 879364 - 880140 + | hypothetical protein Avi_5866 880153 - 880395 + | Biotin carboxyl carrier protein accC 880392 - 881780 + | acetyl-CoA carboxylase biotin carboxylase Avi_5869 881780 - 882655 + | Allophanate hydrolase subunit 1 TERM 807 883161 - 883195 + G 79 -13.6 -3.10245 | gap 1 GCGCTGCGCCGCCGT CCGGGCG-CACCTGC CGAACT GCGGGTGTTGCCCGG TCTCTATTGGGATCG Avi_5870 882645 - 883622 + | hypothetical protein Avi_5871 884653 - 883655 - | transcriptional regulator GntR family TERM 808 885822 - 885859 + G 71 -12 -2.88544 | GGTTCTGGTGCTGGA TCGTGGGCGGACTGCC CAGACC GGCAGTTCGGACACGA TCTATAACCGTCCCA TERM 809 886098 - 886125 + G 70 -2.7 -4.83169 | opp_overlap 886102, overlap 886099 CAGCTTTCTGGCTGA GGAATATACCG GTTCGG CGGTCTATTCG TTTTTCTCGGCCGAT Avi_5873 885184 - 886257 + | ABC transporter nucleotide binding/ATPase protein Avi_5874 886250 - 887149 + | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 810 887888 - 887906 + G 78 -8.1 -4.41494 | GAATGTCTTTGCCTT CGGCGTG CTGAC CACGCTG TTTTCCTTCGCGCTG Avi_5876 887151 - 887996 + | ABC transporter membrane spanning protein (spermidine/putrescine) Avi_5877 887993 - 888742 + | short chain fatty acid oxidoreductase Avi_5878 888762 - 889529 + | dehydrogenase TERM 811 889567 - 889555 - g 100 -10.5 -5.3798 | overlap 889563 CAACAACAACAAAAA CCGGC AAA GCCGG ATCGGGAACTCAAAA TERM 812 889812 - 889795 - g 74 -8.3 -4.19336 | AATGACTTCAAGAAA GCCTCCG GCGT CGGTGGC ACATCCGGCACGGCG Avi_5880 889516 - 890829 + | ABC transporter substrate binding protein (spermidine/putrescine) TERM 813 890877 - 890897 + F 85 -14 -2.78384 | GTTCACCCACCGTCA CCCTCGGG CTTGT CCCGAGGG TCTACTGCCGAGGGC Avi_5881 891039 - 892148 + | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) Avi_5882 892196 - 893077 + | polysaccharide deacetylase family protein TERM 814 893369 - 893344 - g 74 -11.2 -3.60296 | opp_overlap 893343 893346 893364 CAGCCTGACGGGAAA GACCGAGATC ATCGAG GATCTCGGCC ATCTCTGGTCGGTTG Avi_5883 893132 - 893464 + | hypothetical protein Avi_5884 893457 - 894473 + | hypothetical protein Avi_5885 894547 - 895764 + | ABC transporter substrate binding protein (spermidine/putrescine) gatA 895787 - 897166 + | glutamyl-tRNA amidotransferase subunit A lrp 897649 - 897173 - | transcriptional regulator AsnC family TERM 815 897347 - 897379 + g 83 -7.7 -4.56597 | opp_overlap 897355, overlap 897349 GTAATCATAGCCGCC GGAGACCAGGTGA CATTCGA TCACCTGGTCAAC TTTTTCAACCGCGGC Avi_5888 897873 - 899210 + | oxidoreductase TERM 816 900411 - 900426 + G 74 -6.8 -4.26344 | GGCGATCATGATCAT GGTGTC GATT GGCACC TTTTCATGGCGGTCT Avi_5890 899428 - 900909 + | sulfate permease TERM 817 901119 - 901158 + T 100 -19.5 -4.62904 | opp_overlap 901125, overlap 901125 TCGTTCGGTTCTTTT CGAAAAGCCTGCCGC ACCTCCTCCC GCGGCAGGCTTTTCG TTTTTGGAGGTGTTT TERM 818 901152 - 901125 - T 91 -12 -4.07568 | opp_overlap 901119 901125 GGTTCTTTTCGAAAA GCCTGCCGCA CCTCCTCC CGCGGCAGGC TTTTCGTTTTTGGAG TERM 819 901125 - 901152 + T 100 -11.3 -4.77757 | opp_overlap 901125, overlap 901119 GGTTCTTTTCGAAAA GCCTGCCGC ACCTCCTCCC GCGGCAGGC TTTTCGTTTTTGGAG cysG 902659 - 901178 - | siroheme synthase TERM 820 901947 - 901964 + gT 74 -9.8 -3.54424 | CCGACCAGTGTGACC CGCCCC AGTGCC GGGGCG TTTGCGAGCCTGGCG nasA 905288 - 902631 - | nitrate reductase large subunit TERM 821 902997 - 902973 - GR 79 -4.3 -5.00616 | gap 1 GCCTGCGTCAAAAAA TGCCAGCCGG ACATCG CCA-CTGGCA TGGTCGCTATAGCCG TERM 822 903880 - 903899 + gr 71 -9.2 -3.55761 | TGCCACCAGTCTGCC CTGGCCTC GCCG GGGGCCGG TTTGAAGGCTCGCTG TERM 823 904493 - 904470 - GR 70 -3.8 -4.62904 | gap 1, opp_overlap 904485, overlap 904458 AAACAGCTGGAAAAA CTGC-CGCAAC TGC ATGGCGGGCAG GCCGGTCTTCTCCAT TERM 824 904724 - 904740 + gr 74 -7.9 -4.07885 | TCACCACCACTTTCA GGCCGGG GCG CTTGGCC TTTTCCGCAGCAATC TERM 825 905304 - 905316 + r 73 -9.1 -3.67792 | overlap 905314 GATGCTCACTCCGCC GCCTG CAA CAGGC TTTCCGTGGCTATGG nirD 905629 - 905294 - | nitrite reductase small subunit TERM 826 905563 - 905589 + g 70 -12.2 -2.82015 | TGCCCTGAGGAGTTT TTACGCAGCGCG CGC CGCGCAGCGGAA TGTCGTCGATATGGC TERM 827 905644 - 905685 + r 71 -9.5 -3.50853 | gap 1 TGATCTCACTCCGCT GCCTGGGTGTAA-CCGATGG TCG CCATCGGCTTGAACTCATGC TTGTCCTTGCCGGAG nirB 908081 - 905634 - | nitrite reductase large subunit TERM 828 907658 - 907672 + g 86 -5.7 -5.03715 | CCCGGCCCTGGCCCT TGCTG ATCTC CAGCA TTTTTTCGACATCAT nrtC 908890 - 908087 - | ABC transporter nucleotide binding/ATPase protein (nitrate) nrtB 909792 - 908899 - | nitrate ABC transporter permease protein nrtA 911114 - 909816 - | ABC transporter substrate binding protein (nitrate) TERM 829 910642 - 910666 + g 71 -7.7 -3.98172 | overlap 910646 AAGGCGTCCTTCAGC TTGGCGGCGTC AAG GGCGACGCCGG TTTCTGCATATTCCT TERM 830 911214 - 911160 - R 100 -12.3 -5.91981 | gap 1, overlap 911205 AAAACGCAAAAAAAA CGCCGCGAAGATTCCTGCGCGGAC CGGGAGGT GTCCGCTCAAAAACCTT-GCGACG TCGATGTCTCAGGGA TERM 831 911246 - 911232 - R 85 -11.4 -3.6502 | opp_overlap 911230 911232 GATGTCTCAGGGAAA GCGCAG CGT CTGCGC TATTTCGCGTTGGTC TERM 832 911232 - 911246 + r 80 -11.4 -3.41936 | opp_overlap 911232, overlap 911230 GATGTCTCAGGGAAA GCGCAG CGT CTGCGC TATTTCGCGTTGGTC nrtC 912795 - 911524 - | ABC transporter nucleotide binding/ATPase protein (nitrate) TERM 833 912411 - 912374 - G 80 -14.1 -2.78463 | gap 1, opp_overlap 912381 ATGGTCTCCAGCACA CGGGCCAGCGC-CCGGAC ATT GTCCAGCGCGCTTGCCTG CGCTGCAACCAACCC nasT 913395 - 912808 - | two component response regulator TERM 834 914228 - 914243 + G 70 -4.6 -4.54047 | AGATGTCGGCAATGT CTGGAG TGGA CGCCAG TTTTGTCTCCGCTGA Avi_5902 913864 - 914589 + | hypothetical protein Avi_5904 915595 - 914636 - | hypothetical protein Avi_5905 915835 - 916485 + | hypothetical protein Avi_5907 917410 - 916493 - | transcriptional regulator LysR family TERM 835 916575 - 916550 - G 93 -12.5 -4.11692 | opp_overlap 916548 916550 CAGCCATTGTGAAAA GGCCGCCAGCG GCTT CGATAGCGGCC TGTTGTCGGGTGATA gcdH 917559 - 918734 + | glutaryl-CoA dehydrogenase TERM 836 919846 - 919826 - g 71 -12.5 -2.62983 | CCGAGCTTGAGACGA CGAGGCGCG CAC CGCGCCTGG GAGAGCATACGGCTG caiB 918745 - 919896 + | L-carnitine dehydratase TERM 837 920044 - 920054 + G 83 -8.2 -4.56597 | overlap 920042 920040 GCTGTCGCTCAGCCT CGCC TCG GGCG TTTTTGCACAGGAGC Avi_5910 920003 - 920491 + | hypothetical protein TERM 838 920529 - 920571 + F 75 -11.6 -3.06696 | gap 1, opp_overlap 920536, overlap 920536 CTGATCATATTCCTT TTGCAAATCTCTCAA-GCC CCGGCT GCCTTTGAGAGATTTGCAA TGTCTTCAAGGCGAG TERM 839 921466 - 921505 + G 73 -11.4 -3.3334 | GCTGCTTTGGCGGCC TTGCCCGCACTGGTGCTG CGCT CAGCAATGGTTCGGGCGA TTATGCACTGGCCTT Avi_5913 920703 - 921752 + | aminopeptidase dat 921780 - 922646 + | D-alanine aminotransferase Avi_5915 924473 - 922965 - | penicillin binding protein Avi_5916 924721 - 925755 + | dipeptidase TERM 840 926618 - 926669 + G 83 -5 -5.14965 | gap 1, opp_overlap 926630 926634 926637, overlap 926644 926645 TGGGCCGCGCCATCA TCCCGGCCAAT-ATCAACCACCCGG AAG CCGAGCCGATGATTATCGGCCGGAA TTTTTTGGTGAAGAT thiC 926047 - 927879 + | thiamine biosynthesis protein ThiC thiO 927881 - 928873 + | glycine oxidase ThiO thiS 928870 - 929067 + | thiamine biosynthesis protein ThiS thiG 929069 - 929842 + | thiamin biosynthesis ThiG Avi_5922 929839 - 930450 + | thiamine-phosphate pyrophosphorylase protein TERM 841 931574 - 931554 - f 74 -9.7 -3.5594 | opp_overlap 931553 931550, overlap 931545 AAGTCAGGGGTGAAA TCCCGCAGC TCA ACTGCGGAA CTGCCTTTGATACTG TERM 842 931951 - 931964 + F 82 -8.1 -4.54727 | overlap 931944 GACATCCTGTGACCG CCACG GAGA CGTGG TTTTCCTTTCGGGGA TERM 843 932508 - 932521 + F 72 -5.3 -4.57882 | GACTCCTTTTTAAGT GGTTT TGGC AAACC TTTCTTGTTCTTACG TERM 844 933256 - 933279 + F 76 -11 -3.29161 | opp_overlap 933254, overlap 933254 933257 933275 AGAAAAAATAAGGTT TGCACCGTTC TTAT GAACGGTGCC TGTTCTGGTACATTG TERM 845 933257 - 933278 + F 90 -14.5 -2.57014 | opp_overlap 933254, overlap 933256 933254 933275 GAAAAAATAAGGTTT GCACCGTTC TTAT GAACGGTGC CTGTTCTGGTACATT TERM 846 933453 - 933469 + F 70 -10.9 -2.81464 | overlap 933455 GGATCGTTCGTTGTT CATCGTC TTT GACGATG TCTGATGAATGATCA TERM 847 934053 - 934040 - f 80 -5.2 -4.88163 | TGAAGACAAAACAAA CCCC GAGTGT GGGG CGATAGGGTTCGGCA TERM 848 935237 - 935221 - f 81 -9.4 -4.08546 | ATGAGTAACGATAAA GGGGGT GAGAG ACCCCC TCGCCGAAAGACCAA TERM 849 935625 - 935612 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 850 936716 - 936741 + F 77 -11.3 -3.25204 | gap 1, overlap 936714 936713 936716 CGTTCTCATTGACCA TG-CTCATCGAC TTC GTCGATGAGCCA TCTGTTTAGCGCTCA TERM 851 936716 - 936740 + F 81 -12.9 -2.54801 | overlap 936716 936714 936713 CGTTCTCATTGACCA TGCTCATCGAC TTC GTCGATGAGCC ATCTGTTTAGCGCTC TERM 852 936904 - 936892 - f 100 -10.5 -4.97957 | overlap 936894 CACACAATAAGAAAA CGGGC AAT GCCCG CCAGCTTCTCATCAA TERM 853 937113 - 937101 - f 71 -9.1 -3.51934 | overlap 937099 CTTCTCTCATAAACA TCGGC CCC GCCGA AAACATAAAGGGTCG TERM 854 937123 - 937140 + F 91 -12.7 -3.73068 | opp_overlap 937123 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 855 937140 - 937123 - f 100 -12.7 -4.45168 | opp_overlap 937123 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 856 937285 - 937261 - f 95 -14.3 -3.30854 | opp_overlap 937261 AATAACTTACATCAA TCCCGCAGCCT TAA ACGCTGCGGGA TTTTTGCGTTTGGGG TERM 857 937261 - 937285 + F 100 -14.3 -4.81249 | opp_overlap 937261 AATAACTTACATCAA TCCCGCAGCCT TAA ACGCTGCGGGA TTTTTGCGTTTGGGG TERM 858 937486 - 937513 + F 73 -11.4 -2.72661 | overlap 937487 ACCATCAGTCATCTG TGTCTAGAAGGC TTAT GTCTTCTGGACA TAATTAAGGATGATG TERM 859 938127 - 938078 - g 74 -13.8 -2.62024 | gap 2, overlap 938075 938074 938085 GATGACGAGAAGGCA TGGACAATGATCTCCG--GCCACG TCCG CGCGGCGTCAGAGATCATTGGCCA TAAGCTGACCGTGTT TERM 860 938466 - 938491 + G 73 -11.9 -3.12668 | opp_overlap 938459 938484 CCGATACAGCGCTTG GTCTTTCGCCG CTAA CGACGAAAGAC TATTCCGATTTGGCA Avi_5923 937523 - 939031 + | pyruvate kinase TERM 861 939064 - 939097 + T 72 -10.9 -3.1207 | overlap 939062 CCATCATCTTGGGGA CTTGCCCCTCCCAGC AATA GCGAAGAGGGGCAAG TGTATTCCAATTTAC exoP 941474 - 939138 - | exopolysaccharide polymerization/transport protein TERM 862 939892 - 939905 + g 70 -3.7 -4.56597 | overlap 939874 CCAGGAACGACTGTC GCTCC CTTA GGCGC TTTTTGACGCCAACG exoO 943110 - 942115 - | succinoglycan biosynthesis glycosyltransferase exoM 944039 - 943107 - | succinoglycan biosynthesis protein exoA 945061 - 944036 - | succinoglycan biosynthesis protein exoL 946295 - 945051 - | succinoglycan biosynthesis protein TERM 863 946397 - 946376 - R 93 -13.1 -3.64703 | opp_overlap 946381 GCGTCTTCATGGAAA GGTAAGCCA CCCA TGGCTTACC TCGCCCCCTGTCGTG exoK 947331 - 946525 - | endo-1,3-1,4-beta-glycanase TERM 864 946800 - 946823 + g 100 -9.6 -5.26875 | gap 1 CGTTGAAGCCCTTGT TGGC-GCCGTT ATC GACGGCAGCCA TTTTTTCATTGCCAC TERM 865 946963 - 946952 - G 81 -3.6 -5.1361 | ATAAAGGTGAAAAAA GCCG AATT CAGC CCGGACGCATCGGCG exoH 948409 - 947333 - | succinoglycan biosynthesis protein TERM 866 947457 - 947432 - G 74 -7.6 -4.10161 | gap 1, overlap 947433 CATGACCCCGTAAAA TCCCGGCG-TC AGCCG GATCGCCAGGA AATGGGAGGCAAGCA TERM 867 948717 - 948734 + r 100 -4.1 -5.64274 | overlap 948720 GTAAAGCTATGTATC TATTCGC GTCT GCGACTA TTTTTTTGTCCATAG exoT 950334 - 948856 - | succinoglycan biosynthesis transport protein TERM 868 949412 - 949398 - G 71 -11.4 -3.21378 | overlap 949392 949396 CAAACAGCACCAACA TGGCCG GCT CGGCCA ATGCCCACATGCCGA TERM 869 950503 - 950485 - H 75 -11.8 -3.09834 | opp_overlap 950484 950487, overlap 950487 GATTGCATCATGGAA TATGGTGC AAG GCACCATA GTCTGATAGCGCAAG TERM 870 951417 - 951395 - g 86 -8.5 -4.57073 | gap 1 GACCGCTCGTAAAAA TGCCC-TCTG GGGT CAGATGGGCA TGGTAAAACGCCGTA exoW 950571 - 951530 + | succinoglycan biosynthesis protein exoV 951604 - 952569 + | succinoglycan biosynthesis protein TERM 871 952589 - 952617 + T 100 -12.5 -5.04601 | opp_overlap 952589 952588 GCAGGTGTATGAAAG TCTGTCCGGTTTA CTC TGAGCCGGGCAGA TTTTTCATTTATGCG exoU 953713 - 952697 - | succinoglycan biosynthesis glycosyltransferase TERM 872 953645 - 953669 + g 83 -7.7 -4.57073 | opp_overlap 953637 953641 953640 953644 CAAGGCAGAACGCAC CGCCCGTGCCA CAG TGGCGCTAGCG TTTTTGGCGGCAATA TERM 873 953739 - 953753 + r 74 -8.5 -3.96148 | CGTACTCTAATCTGA CGCGC AGGTA GCGCG TTTCTGATAAGAACA exoX 954261 - 953986 - | exopolysaccharide production repressor protein TERM 874 954919 - 954933 + H 70 -5.6 -4.37092 | overlap 954917 CTAATTGCTATCATT CCATCC TCT GGAAGG TTTTCTGCAAAGGGT TERM 875 955067 - 955080 + G 83 -5.2 -5.00616 | opp_overlap 955067 AGTCCGCGACAAGAT CGGC CAGTTC GCCG TTTTTTACGACCGCC TERM 876 955148 - 955168 + G 72 -9.7 -3.65812 | overlap 955158 GAGGGTTTGATATTT TCATCGCCA CCA TGGCGCTGA TTATGTTCAGCCCGA TERM 877 955411 - 955389 - g 80 -9.8 -4.14392 | opp_overlap 955389 955388 CCGTAAGCTGCAAAA CGATCCCCGC GTC ACGGCGATCG GTTCTGTGCTGCGTA exoY 955048 - 955725 + | structural protein exoF 955822 - 957102 + | exopolysaccharide production protein TERM 878 957202 - 957220 + G 100 -14.6 -3.93061 | overlap 957195 TTCGTTTTTGCCTAT TCTGCCCG TTT CGGGCAGA TTTCCATTTTGGCCT TERM 879 957654 - 957671 + G 72 -9.1 -3.84712 | gap 1, opp_overlap 957638 957637 CAGCATATGGATGCT GCC-GCCC GCT GGGCTGGC TTTGCTATCAGCTTA TERM 880 958040 - 958050 + G 74 -8.2 -4.20136 | AGTTCTACATCCCAA CCCG GGC CGGG TTTCATTTTCACAAT exoQ 957109 - 958386 + | exopolysaccharide production protein TERM 881 958410 - 958391 - f 95 -9.3 -5.1615 | opp_overlap 958394 GCAATATCTAAAAAA CAACGGC GCTGTA GCCGTTG TAAAAGAAGCGCTAC TERM 882 958921 - 958935 + G 86 -5.6 -5.15969 | AATGCATGCAGTCGT GGAACC TTA GGTGCC TTTTTTCACTTCAGG Avi_5941 958911 - 959270 + | hypothetical protein TERM 883 959442 - 959428 - g 75 -4.2 -4.72272 | CGTGCCCAGGAAAAA CTGGTG AAG CAGCAG GAAGGGCAGCAGGCG Avi_5942 959302 - 959598 + | hypothetical protein Avi_5943 960300 - 959653 - | hypothetical protein TERM 884 960392 - 960418 + r 100 -14.4 -4.43859 | overlap 960344 960373 960393 TTGCGACATTGTTTT GGCGGCGCGTTT CGC AAGCGCGCCGCA TTTTGTAGCATTCTG TERM 885 960393 - 960417 + r 100 -17.9 -3.25592 | overlap 960344 960373 960392 TGCGACATTGTTTTG GCGGCGCGTTT CGC AAGCGCGCCGC ATTTTGTAGCATTCT Avi_5945 961388 - 960435 - | dioxygenase TERM 886 960529 - 960541 + g 72 -9.1 -3.89881 | overlap 960537 TTCGGCAGCTTCAAG GCCTG ACC CAGGC TTTCTGCCGGTTCAT TERM 887 961623 - 961608 - H 78 -7.6 -4.30719 | TTGCGTTATAAGAAA CCAGAA TGCA TTCTGG AAATAAACGCGGAGG Avi_5946 961645 - 962583 + | transcriptional regulator LysR family pssN 962799 - 964019 + | exopolysaccharide export protein TERM 888 964106 - 964118 + T 72 -4.8 -4.62069 | AAGTTCTATAGGATT GCTC TTGGT GAGC TTTTTCGGGTAGCAG Avi_5949 964841 - 964089 - | transcriptional regulator TetR family TERM 889 964158 - 964170 + g 84 -6.9 -4.76041 | opp_overlap 964156, overlap 964147 964156 CTGGCGCAGGACATC GCCGT CCG GCGGC TTTTTCCTGCGTGTC TERM 890 964224 - 964235 + g 72 -5.8 -4.431 | TGCAGGGGCTTTCGG TCGC CGCC GCGA TTTTGTCGGTCCATA Avi_5950 964941 - 966407 + | crocetin dialdehyde TERM 891 966463 - 966424 - f 100 -15.8 -3.90112 | overlap 966427 GTCGCCTGAAGGAAA GTATCGGGCTGAAAGCCG GGAA CGATTTTCAGCCCGATGC ACGGATAGCAAGGCG TERM 892 966460 - 966427 - f 100 -16.1 -3.02166 | overlap 966424 GCCTGAAGGAAAGTA TCGGGCTGAAAGCCG GGAA CGATTTTCAGCCCGA TGCACGGATAGCAAG TERM 893 966740 - 966730 - g 88 -5.4 -5.28176 | CCCAGCGACAAAAAA CACA ACA TGTG GTGATGTAAACCGGT TERM 894 967083 - 967094 + G 70 -3.6 -4.63486 | TCTTTCGCCACTTCC GCTC CTAT GGGC TTTTATTGGCCGGCT Avi_5952 966710 - 968581 + | membrane protein vdh 968604 - 970085 + | vanillin: NAD oxidoreductase Avi_5954 970836 - 970177 - | transcriptional regulator TetR family Avi_5955 971513 - 970941 - | hypothetical protein TERM 895 971087 - 971107 + g 79 -12.7 -3.45849 | opp_overlap 971078 971100 CAATGACAGTGGCGT CACTGTTGA AAA TCAACAGTG TTGTGGTCATCTGGC TERM 896 971177 - 971167 - G 71 -8.2 -4.07687 | ATGGTGTGGCGAAAA CGGC CGC GCCG GGACATGATATTGAG hutU 973188 - 971515 - | urocanase hutG 973997 - 973191 - | N-formylglutamate amidohydrolase hutH 975536 - 973998 - | histidine ammonia-lyase TERM 897 974398 - 974414 + g 74 -2.2 -5.00616 | TCGGCAATCATCAGG CCGG AATTGAGGC CCGG TTTTTTCGCCAAAAA TERM 898 974478 - 974468 - G 74 -8.2 -4.25104 | TCGGGTCCACCAAAA GCGC AAT GCGC CGCTGGGCAATGGCC TERM 899 975022 - 975032 + g 79 -6.8 -4.60487 | CGTTCCAGCGCAATC CTGC CCG GCAG TTTTTCGCCCTGATA hutI 976772 - 975552 - | imidazolonepropionase TERM 900 975929 - 975900 - G 90 -10.7 -4.62475 | gap 1, opp_overlap 975911 ACGGATAAAGTAAAA GGCACC-CGGCAGC AGC ACCGCCACGGTGCC AGCTTTGGCCATGGC Avi_5960 976882 - 978231 + | hydrolase Avi_5962 979819 - 978458 - | nitrilotriacetate monooxygenase TERM 901 978702 - 978726 + g 74 -7.1 -4.38712 | overlap 978705 GCGATCTCAGTGGGG GTGCCGGTGAT GCC ATTGCCGGTGC TTTTCTCGGCGTAGA TERM 902 979672 - 979686 + g 75 -5.6 -4.59853 | opp_overlap 979664 ACATGAAGTCGAATT TCGCCG CTT CGGAGA TTTTTGCCACGTTCA Avi_5963 980589 - 979840 - | transcriptional regulator GntR family Avi_5964 981377 - 980586 - | ABC transporter nucleotide binding/ATPase protein Avi_5965 982042 - 981374 - | ABC transporter membrane spanning protein (amino acid) Avi_5966 982680 - 982039 - | ABC transporter membrane spanning protein (amino acid) Avi_5967 983794 - 982967 - | ABC-type amino acid transport/signal transduction periplasmic protein TERM 903 983008 - 983020 + g 73 -3.4 -4.75404 | CAGGCGTATCAAACT TGGT GCCAA ACCA TTTTTCCTGCAATTT frcK 984639 - 984004 - | pantothenate kinase TERM 904 984573 - 984605 + g 81 -11.9 -3.72576 | opp_overlap 984578, overlap 984576 CGGCAATGGCGATCA TGAAACGGCTGGCCC CTT GGGCCAGCCGCGTGA TTTCCTCAAGAAGGG TERM 905 984576 - 984602 + g 77 -13.6 -2.96695 | opp_overlap 984578, overlap 984573 CAATGGCGATCATGA AACGGCTGGCCC CTT GGGCCAGCCGCG TGATTTCCTCAAGAA TERM 906 984600 - 984578 - G 100 -20.6 -3.78953 | opp_overlap 984576 984573 ATGGCGATCATGAAA CGGCTGGCCC CTT GGGCCAGCCG CGTGATTTCCTCAAG frcA 985442 - 984636 - | ABC transporter nucleotide binding/ATPase protein (sugar) TERM 907 984939 - 984918 - G 93 -13.7 -3.90588 | overlap 984905 CACCTTGGAACCAAA GGCTGCGGC ACGG GCCACAGCC ACACCCTGACGCTGA TERM 908 985196 - 985163 - G 74 -12.5 -2.87881 | gap 1, opp_overlap 985153 985152 CAAGGTTCTGATACA CCGTTTCGATACCCGC CTT GCGGGCATC-AATCGG TGAGCGGAAATTGAT frcC 986500 - 985418 - | ABC transporter membrane spanning protein (sugar) TERM 909 986669 - 986652 - R 95 -14.1 -3.40403 | opp_overlap 986643 986652 TGGCGCTTACCAGAA GGGCGGC CTGA GCCGCCC TTCCGTTGCAATATT TERM 910 986652 - 986669 + r 89 -14.1 -3.19018 | opp_overlap 986652, overlap 986643 TGGCGCTTACCAGAA GGGCGGC CTGA GCCGCCC TTCCGTTGCAATATT frcB 987721 - 986696 - | ABC transporter substrate binding protein (sugar) TERM 911 989083 - 989101 + G 86 -12.4 -4.09864 | TCATCGACTTTTCCG CCGCCGTC ATC GATGGCGG TTTTCCGCAATGGGT TERM 912 989220 - 989246 + G 70 -12.2 -2.8169 | overlap 989206 989219 989218 GTCGGCCACCAGGCC CGGTCGGTTGGC GGT GCCAGCCTGCCG CTGTTTTCCCGTTAT frcR 988071 - 989300 + | transcriptional regulator ROK family TERM 913 989618 - 989601 - g 71 -6.9 -4.21194 | opp_overlap 989611 GTCCATGAGCCAAAA CAGCCGG TCGT CCCGCTG CTGGGGCCGGATTTC Avi_5973 989301 - 989732 + | hypothetical protein TERM 914 989840 - 989811 - T 89 -13.5 -3.35679 | opp_overlap 989813, overlap 989813 GGTTTTGAGCCAGAA GAGGCCGTGCGGG GGGG CCTGCACGGCCTT TTCCATGCTCAAATC TERM 915 989813 - 989838 + T 100 -18.3 -4.21194 | opp_overlap 989811 989813 TTTTGAGCCAGAAGA GGCCGTGCGGG GGGG CCTGCACGGCC TTTTCCATGCTCAAA TERM 916 989838 - 989813 - T 100 -16.1 -3.24924 | opp_overlap 989813, overlap 989811 TTTTGAGCCAGAAGA GGCCGTGCGGG GGGG CCTGCACGGCC TTTTCCATGCTCAAA Avi_5975 990616 - 989849 - | NAD/NADP dependent oxidoreductase Avi_5976 991104 - 990658 - | transcriptional regulator AsnC family TERM 917 991555 - 991576 + G 80 -5.1 -4.95155 | gap 1, overlap 991552 GGGCTGGCGCGCCGG GCGG-CGG AACAAGG CCGACCGC TTTTTGTGCTCTGGC rocF 991228 - 992160 + | arginase ocd 992160 - 993215 + | ornithine cyclodeaminase Avi_5980 993302 - 993460 + | stress induced protein TERM 918 994211 - 994167 - g 74 -11.2 -3.57144 | GGGCCGATCCGCAAA CCGGCCTGTCGCCCGCCCAT TGGGC ACGGGCGATCGGCTGGCTGG CGATGGCCATGGTCG yteR 993593 - 994708 + | di-transpoly-cis-decaprenylcistransferase TERM 919 994687 - 994719 + T 73 -4.1 -4.82333 | gap 1, overlap 994688 TTGCGCGACACACTC CGCATCTCCCG-CA CTGGCC TGACGGGAGCTGCC TTTTTCGGTTGTTAT tonB 995684 - 994731 - | tonB protein exbD 996148 - 995681 - | TonB system transport protein ExbD TERM 920 995828 - 995851 + g 71 -7.4 -4.20918 | gap 1 GCCGACATTCTTATC GGCGCGCAGGA AAA TCC-GCGTGTC TTTATTGCCCTTGGA TERM 921 995879 - 995909 + g 76 -13.3 -2.70932 | opp_overlap 995883, overlap 995881 995883 GGAGACCTGTTCCAG CACAGTCGGCAGC CTGTC GCGGCTGACTGTG TCATTGCCAAGCGCC exbB 997178 - 996153 - | tonB-system energizer ExbB TERM 922 997209 - 997238 + H 70 -6.4 -4.18044 | gap 1, overlap 997210 TCCAAATCCATTGCC AGCA-TGTCCCGC GCATG GCGGGGCAGTGCC TTTAATTGTTTGTCG Avi_5986 997212 - 997766 + | hypothetical protein TERM 923 997851 - 997894 + T 100 -16.8 -3.85698 | overlap 997855 CCCCCCAAGGCGGGC GAAGCCGAAGTCCGCCGGAT CTCC AGCTGACGGACTTCGGTTTC TTTATGAGAAACGGC TERM 924 997855 - 997890 + T 100 -14 -4.55295 | overlap 997851 CCAAGGCGGGCGAAG CCGAAGTCCGCCGGAT CTCC AGCTGACGGACTTCGG TTTCTTTATGAGAAA TERM 925 997963 - 997940 - T 77 -3 -5.08601 | overlap 997941 997955 997956 997959 TGATCTCAACAAAAA TGCCGCTCAT ATAA ATGGACGGCG CATGACGCCATCGGG Avi_5989 998719 - 997946 - | transcriptional regulator CRP family TERM 926 998363 - 998335 - G 91 -4.6 -5.63645 | gap 2 CGAAAAGAGAAAAAA GCCGCTCT-CG-CT CAA AGACGCAGAGCCGC ATGGGTGTCAGCGCT Avi_5991 998861 - 999289 + | hypothetical protein TERM 927 999342 - 999293 - T 100 -14.4 -3.52475 | gap 1, opp_overlap 999299 999300, overlap 999298 CCGAACAGATGACAA GCAGATCTCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGATGT-TGT TATACCGCGAATGCG TERM 928 999338 - 999298 - T 100 -19.8 -2.98786 | opp_overlap 999299 999300, overlap 999293 CAGATGACAAGCAGA TCTCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGATG TTGTTATACCGCGAA TERM 929 999299 - 999338 + T 100 -23.1 -3.78934 | gap 1, opp_overlap 999298 999293, overlap 999300 AGATGACAAGCAGAT C-TCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGATG TTGTTATACCGCGAA TERM 930 999300 - 999336 + T 100 -26.8 -3.4811 | opp_overlap 999298 999293, overlap 999299 GATGACAAGCAGATC TCTCCCAATCGGCGCG ACCCG CGCGCCGATTGGGAGA TGTTGTTATACCGCG Avi_5992 999908 - 999342 - | ECF family sigma factor TERM 931 999549 - 999573 + g 72 -4.9 -4.63527 | overlap 999551 AATGGCTTCGCGCTG GTCGCTCGG CAGTTGA TCGAGCGCC TTTTTGAAGTCCTGA Avi_5993 1000540 - 1000704 + | hypothetical protein TERM 932 1000723 - 1000759 + G 93 -12.9 -4.3739 | opp_overlap 1000725 1000730, overlap 1000728 1000730 CTGCGAACTGGTAAC AACGACAGGGCCCGGCA AAT TGCCGGGCCCTATTGCG TTTTATCACCGGATG TERM 933 1000757 - 1000725 - g 100 -19.9 -3.65314 | opp_overlap 1000723 1000728 1000730, overlap 1000730 GCGAACTGGTAACAA CGACAGGGCCCGGCA AAT TGCCGGGCCCTATTG CGTTTTATCACCGGA TERM 934 1000728 - 1000754 + G 93 -18 -3.41587 | opp_overlap 1000725 1000730, overlap 1000723 1000730 AACTGGTAACAACGA CAGGGCCCGGCA AAT TGCCGGGCCCTA TTGCGTTTTATCACC TERM 935 1000730 - 1000752 + G 100 -20.6 -3.273 | opp_overlap 1000725 1000730, overlap 1000728 1000723 CTGGTAACAACGACA GGGCCCGGCA AAT TGCCGGGCCC TATTGCGTTTTATCA TERM 936 1000752 - 1000730 - g 100 -20.6 -3.01745 | opp_overlap 1000730 1000728 1000723, overlap 1000725 CTGGTAACAACGACA GGGCCCGGCA AAT TGCCGGGCCC TATTGCGTTTTATCA Avi_5995 1000715 - 1001182 + | hypothetical protein Avi_5998 1002391 - 1001324 - | hypothetical protein TERM 937 1001525 - 1001537 + g 70 -2.7 -4.72497 | opp_overlap 1001521 GGGGTCGAAATCGAC TTTGA CGG TCAGA TTTTGTTCATCGATG Avi_5999 1003641 - 1002646 - | two component sensor kinase Avi_6000 1004613 - 1003819 - | two component response regulator TERM 938 1005081 - 1005058 - H 70 -5.4 -4.43844 | gap 1 TCACTAGGGATAAAA GGGTT-TTGAT TCG ACCAACAACCC CTGGATTTCTAGAAT Avi_6001 1005428 - 1005559 + | hypothetical protein TERM 939 1005599 - 1005638 + T 100 -13.8 -3.61715 | opp_overlap 1005604, overlap 1005604 TGACGGGAAATATAG AAAAAGCGTCATGTGTTT TGCA AATCACATGACGCTTTTG TTGTTCAAACCGGTC TERM 940 1005604 - 1005633 + T 100 -13.7 -4.89477 | opp_overlap 1005604, overlap 1005599 GGAAATATAGAAAAA GCGTCATGTGTTT TGCA AATCACATGACGC TTTTGTTGTTCAAAC TERM 941 1005633 - 1005604 - T 100 -13.7 -5.14985 | opp_overlap 1005599 1005604 GGAAATATAGAAAAA GCGTCATGTGTTT TGCA AATCACATGACGC TTTTGTTGTTCAAAC Avi_6002 1006207 - 1005695 - | DNA-binding ferritin-like protein (oxidative damage protectant) Avi_6003 1006752 - 1006318 - | hypothetical protein TERM 942 1006685 - 1006651 - G 72 -4.9 -4.64383 | gap 1, opp_overlap 1006646, overlap 1006646 AATCAGAAAGCAAAA CCCGGCAATAGCGCCA GCGA TGGCGTTGC-GCCGAG CCTTGTCGATTCTTG Avi_6004 1007055 - 1006756 - | hypothetical protein Avi_6005 1007342 - 1007539 + | hypothetical protein TERM 943 1007584 - 1007617 + T 100 -16.1 -5.27923 | gap 1 TGTCGTCTTGCGGGT GCGGCGCTGGAAACCA TGA TGGTT-CTGGCGCCGC TTTTTTATGACGTTA Avi_6007 1009255 - 1007636 - | ATP-dependent DNA ligase Avi_6008 1010265 - 1009252 - | hypothetical protein TERM 944 1010625 - 1010575 - g 70 -11.9 -2.7263 | gap 1, opp_overlap 1010623, overlap 1010574 AGGACGTTGGCAAAT TCGTCAACGAACAGATTTCGGCCG TACC CGGC-GTGGTCCGTTCGCTGACGA CAATGACGTTTACCG Avi_6009 1010412 - 1010648 + | transcriptional regulator Lrp family Avi_6010 1013595 - 1010671 - | aminotransferase protein TERM 945 1011421 - 1011452 + g 85 -15.2 -3.02144 | gap 1, opp_overlap 1011412 GACATAGGCGGCAGC GCTATC-CGGCCCTC TAT GCGGGCCGCGATAGC TGTTGGGGGCGGTGA purU 1014758 - 1013874 - | formyltetrahydrofolate deformylase rfe 1017370 - 1016153 - | undecaprenyl-phosphate alpha N-acetylglucosaminyltransferase Avi_6012 1015119 - 1016210 + | endoglucanase precursor TERM 946 1016742 - 1016713 - GT 76 -9.3 -3.7941 | CATCGGCCAGAACAA TGCTGGTCATGGC CAGC GCCATGACGATCA GCCGCCACGGCATGG TERM 947 1016842 - 1016825 - GT 78 -9.1 -3.86015 | overlap 1016836 GACCGGTTCCAGAAA CACCGAG GACA CCCGGTG CTGGCCAAGAAAGGG Avi_6014 1019673 - 1017460 - | exopolysaccharide polymerization/transport protein TERM 948 1017855 - 1017887 + g 100 -11.3 -4.96848 | overlap 1017856 CGAGATCGGGCTGCT GCAATGCCTGGGCAA GGC TTGGCCGGGCATTGG TTTTTCTGTGCGAGC TERM 949 1017856 - 1017886 + g 88 -14.8 -3.57627 | overlap 1017855 GAGATCGGGCTGCTG CAATGCCTGGGCAA GGC TTGGCCGGGCATTG GTTTTTCTGTGCGAG TERM 950 1018015 - 1017994 - G 74 -7.9 -4.17556 | gap 1, overlap 1017995 CACATCGCCAATAAA GGCGCTGGCC ACC GGCCTGC-CC GCTGCAACAAACAGA TERM 951 1018119 - 1018073 - G 85 -9.4 -4.55491 | gap 3, opp_overlap 1018073 1018081 CATTCAATCAGAAAA CCGGCTGTGCTGGCGACCGCATG GGAC CAGGCG-CCGCCTGC-C-GCCGG TTGTGATGCGGTTGC TERM 952 1019131 - 1019160 + g 73 -12.1 -3.16935 | gap 1, opp_overlap 1019108, overlap 1019121 1019119 CGCCTGGAAGGCGGC GCTTGC-CCGGCGC GCT GCGTCGGAGCGGGC TTCGTCCACCTGTTT TERM 953 1019625 - 1019608 - G 78 -4.1 -5.0133 | gap 1, overlap 1019620 CAGCGCGGCAAAAAA CGCCAGGT AAT ACC-AGCG CCGTCGCAAGATCCC TERM 954 1020263 - 1020275 + G 75 -4.1 -4.85782 | CCGATCTTGTCCATG TCCAT GGG GTGGA TTTCTTTTTCGACGC TERM 955 1020320 - 1020347 + G 100 -10.6 -5.08824 | gap 1 GCTTCCTGCATGGCG CCCCCAT-GGTGG CGA CCACCCATGGCGG TTTTTTCCATACCCG Avi_6015 1019941 - 1021134 + | GumH protein Avi_6016 1021131 - 1022282 + | hypothetical protein TERM 956 1022512 - 1022523 + G 79 -5.8 -4.71776 | overlap 1022494 TGGTGGCGGAACTTG GCAC CGGT GTGC TTTTATTGCGTCTTC Avi_6017 1022337 - 1023857 + | polysaccharide efflux transporter TERM 957 1025656 - 1025646 - g 70 -2.4 -4.81249 | opp_overlap 1025647, overlap 1025647 TCGCAAAGCGAAAAA CGCC GCT GGTG CTGCTCTATAGCGAG Avi_6018 1024016 - 1025926 + | hypothetical protein Avi_6019 1028368 - 1025906 - | mannosidase TERM 958 1026705 - 1026684 - G 85 -15.1 -3.09491 | GACAGATGCAGGTAA CGCGCCGGA TTTT CCCGGCGCG GCCTGGCCGGATCGA Avi_6020 1029385 - 1028423 - | hypothetical protein TERM 959 1028526 - 1028547 + g 70 -4.3 -4.62471 | TTGCGGGTGACGGCA CGGGCCAGT TGGA ACTGAACCG TTTTTGCCAGTTCCG TERM 960 1028809 - 1028797 - G 71 -6.9 -4.24404 | overlap 1028790 AGTGAAAGGCGAAAA GCCGC TTG GCGAC GGCGCGCAGATGCGT Avi_6021 1030296 - 1029388 - | hypothetical protein acd 1031500 - 1030301 - | acyl-CoA dehydrogenase Avi_6023 1031751 - 1031500 - | hypothetical protein TERM 961 1031915 - 1031927 + r 79 -4.1 -5.03145 | CTTCTCGGCTTTTTT TGGGA TTA TCTCA TTTTTTAAAAAGTTG kamA 1033033 - 1031984 - | L-lysine 2,3-aminomutase TERM 962 1032585 - 1032568 - G 71 -10.5 -3.48276 | GGCGTGGCGACAGAA CCAGCGG ATCG CCGCCGG TAAAGATCACTTCCC poxA 1034103 - 1033030 - | lysyl-tRNA synthetase TERM 963 1034551 - 1034532 - g 74 -7.9 -4.15106 | CATGAACCCGGAAAA CTACGAC CAGATC GTCGTAG ATGTCGAGACCATGG efp 1034266 - 1034835 + | translation elongation factor P TERM 964 1034919 - 1034894 - T 100 -11.8 -4.45544 | opp_overlap 1034894 TTTGATTAAGGAAAA GCCCGGTTCG TTTTCG CGAGCCGGGC TTTTTGCTGTTATGC TERM 965 1034894 - 1034919 + T 100 -14.7 -4.90906 | opp_overlap 1034894 TTTGATTAAGGAAAA GCCCGGTTCGT TTTC GCGAGCCGGGC TTTTTGCTGTTATGC TERM 966 1035034 - 1035009 - T 100 -20.5 -5.52023 | opp_overlap 1035009 1035026 ACCATCAATAAAAAA CGCCCGGCGAT CAGG ATCGCCGGGCG TTTGCATAAAAAGTC TERM 967 1035009 - 1035034 + T 100 -20.5 -3.6502 | opp_overlap 1035009, overlap 1035026 ACCATCAATAAAAAA CGCCCGGCGAT CAGG ATCGCCGGGCG TTTGCATAAAAAGTC nodT 1036507 - 1035056 - | nodulation protein T precursor TERM 968 1035269 - 1035314 + g 72 -9.2 -3.64703 | opp_overlap 1035281, overlap 1035261 1035257 1035278 CAGGGACGACGCGCC GTCCTTATA-GGATGCGGTCGA AAGT TCGAGCGCTTCCTTATA-GGAC TTTACATAGGCGCGA TERM 969 1036604 - 1036580 - R 85 -10 -4.1585 | opp_overlap 1036579 1036578 CCACAATCTCGAAAA TGCCGCGC TTTTATTGG GCGCGGCA ACTGTTTCTTAACCT acrB 1039752 - 1036618 - | acriflavin resistance protein B acrA 1041032 - 1039797 - | acriflavin resistance protein A TERM 970 1040760 - 1040774 + g 71 -10 -3.56844 | opp_overlap 1040735, overlap 1040759 AGCCTTGACGAAGCT GCCTTC CTT GAAGGC TATTTCCTTGATCAC ameR 1041873 - 1041205 - | transcriptional regulator TetR family purC 1042829 - 1041879 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 971 1042260 - 1042247 - G 75 -9.5 -3.8512 | opp_overlap 1042247 TATCGACGAGAATAA GGCCG CGCT CGGCC GCCTTCTGTTGGCCG TERM 972 1043017 - 1042995 - R 100 -12.7 -5.63517 | gap 1, opp_overlap 1042990 TTTTCAAAGAAAAAA GCGCGCG-GC CATC GCACGCGCGC TTCCCATTCTCTTAA Avi_6032 1043698 - 1043045 - | membrane protein TERM 973 1045163 - 1045143 - H 74 -9.7 -3.5594 | opp_overlap 1045142 1045139, overlap 1045134 AAGTCAGGGGTGAAA TCCCGCAGC TCA ACTGCGGAA CTGCCTTTGATACTG TERM 974 1045540 - 1045553 + H 82 -8.1 -4.54727 | overlap 1045533 GACATCCTGTGACCG CCACG GAGA CGTGG TTTTCCTTTCGGGGA TERM 975 1046097 - 1046110 + H 72 -5.3 -4.57882 | GACTCCTTTTTAAGT GGTTT TGGC AAACC TTTCTTGTTCTTACG TERM 976 1046845 - 1046868 + H 76 -11 -3.29161 | opp_overlap 1046843, overlap 1046843 1046846 1046864 AGAAAAAATAAGGTT TGCACCGTTC TTAT GAACGGTGCC TGTTCTGGTACATTG TERM 977 1046846 - 1046867 + H 90 -14.5 -2.57014 | opp_overlap 1046843, overlap 1046845 1046843 1046864 GAAAAAATAAGGTTT GCACCGTTC TTAT GAACGGTGC CTGTTCTGGTACATT TERM 978 1047042 - 1047058 + H 70 -10.9 -2.81464 | overlap 1047044 GGATCGTTCGTTGTT CATCGTC TTT GACGATG TCTGATGAATGATCA TERM 979 1047642 - 1047629 - H 80 -5.2 -4.88163 | TGAAGACAAAACAAA CCCC GAGTGT GGGG CGATAGGGTTCGGCA TERM 980 1048822 - 1048806 - H 81 -9.4 -4.08546 | ATGAGTAACGATAAA GGGGGT GAGAG ACCCCC TCGCCGAAAGACCAA TERM 981 1049210 - 1049197 - H 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 982 1050301 - 1050325 + H 81 -12.9 -2.54801 | overlap 1050299 1050298 1050301 CGTTCTCATTGACCA TGCTCATCGAC TTC GTCGATGAGCC ATCTGTTTAGCGCTC TERM 983 1050301 - 1050326 + H 77 -11.3 -3.25204 | gap 1, overlap 1050301 1050299 1050298 CGTTCTCATTGACCA TG-CTCATCGAC TTC GTCGATGAGCCA TCTGTTTAGCGCTCA TERM 984 1050489 - 1050477 - H 100 -10.5 -4.97957 | overlap 1050479 CACACAATAAGAAAA CGGGC AAT GCCCG CCAGCTTCTCATCAA TERM 985 1050698 - 1050686 - H 71 -9.1 -3.51934 | overlap 1050684 CTTCTCTCATAAACA TCGGC CCC GCCGA AAACATAAAGGGTCG TERM 986 1050708 - 1050725 + H 91 -12.7 -3.73068 | opp_overlap 1050708 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 987 1050725 - 1050708 - H 100 -12.7 -4.45168 | opp_overlap 1050708 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 988 1050861 - 1050879 + H 93 -11.7 -4.26189 | opp_overlap 1050853 1050861 ATATCAATACGATAA GCCCTCC CAAAA GGAGGGC TTTTGGCGTTTCTGG TERM 989 1050879 - 1050861 - H 86 -12.4 -3.53933 | opp_overlap 1050861, overlap 1050853 ATATCAATACGATAA GCCCTCCC AAA AGGAGGGC TTTTGGCGTTTCTGG TERM 990 1051238 - 1051256 + H 100 -11 -5.25656 | opp_overlap 1051227 AATAGCCCCGAGTTT CGTAGCCC CCC GGGTTACG TTTTTTGCTGCTTTT TERM 991 1052252 - 1052269 + H 77 -6.3 -4.66953 | gap 1, overlap 1052254 1052255 AGCCTCGTTCGGTGA TCTGACGC ACA GCGTC-GA TTTTTAAACTCTTCG TERM 992 1052528 - 1052539 + H 79 -3.6 -5.11937 | overlap 1052517 TGAATGTCGTTTTTG CGGC ATTT GTCG TTTTTTACAATTGTT TERM 993 1053308 - 1053294 - g 70 -2.1 -4.75372 | overlap 1053301 ATGAGCGATGAAAAA CAGAA TATCG TCCTG CTGCCAGGCGACCAG TERM 994 1053732 - 1053711 - g 71 -7.9 -3.96327 | ACCGTTTACCAGAAA GTGCCGTCA ACAT CGGCGGCAC CTCTCCCTGGCTCCT bexD 1052613 - 1053755 + | polysaccharide export protein TERM 995 1053823 - 1053855 + T 100 -14.4 -3.90082 | AAAATTCGGGTCTTG GACATCTCAAATTC TTGAT GGATTTGAGATGTC TTTAATGCTTTGATG impN 1054809 - 1053904 - | serine/threonine protein kinase TERM 996 1054095 - 1054105 + g 75 -5.4 -4.63218 | TCGCCGCCGATGCCT TGCT GGA AGCA TTTTGTTCCGGGGCG impM 1056247 - 1054796 - | serine/threonine phosphoprotein phosphatase impL 1059842 - 1056348 - | IcmF family protein TERM 997 1056516 - 1056531 + g 70 -4.6 -4.4267 | opp_overlap 1056517, overlap 1056511 1056510 1056517 GTCAAACAGGCGGAA AGGCGA CCAG TCGCCA TTTTCGGTTTTGGCC TERM 998 1058375 - 1058365 - G 74 -6.8 -4.3898 | AGGACGCGCAGAAAA TCGG CAT CCGA CACATTGCGCACCGG impK 1061374 - 1059839 - | OmpA-type porin TERM 999 1061296 - 1061308 + g 70 -2.6 -4.7497 | overlap 1061281 1061301 CCTTGCGGGCGTTGT CGTC CTGGA GGCG TTTTTCCTCCGTGAC impJ 1062711 - 1061371 - | hypothetical protein impI 1063960 - 1062701 - | forkhead-type phosphopeptide-binding protein impH 1064967 - 1063957 - | hypothetical protein TERM 1000 1064468 - 1064455 - G 74 -2.3 -5.00884 | opp_overlap 1064466 ACGGTCGGCAAAAAA TCCGG AAAA CCGCA GGATCACATCTTCAT TERM 1001 1064539 - 1064554 + g 87 -7.6 -4.80178 | opp_overlap 1064539 GGTCAGCGATAGCAA CACCTT GCGG AAGGTG TTTTGTTCCTTGGTG TERM 1002 1065000 - 1064986 - R 91 -12.8 -3.83502 | CACCCCTACAGCAAA GGCCGC TCG GCGGCC CGGGCGGGCCAGCGG impG 1066757 - 1064976 - | hypothetical protein TERM 1003 1065360 - 1065371 + g 79 -5.8 -4.7497 | opp_overlap 1065353, overlap 1065352 GGAGACCAGCCGCCA CTGG CGCG CCAG TTTTTCATGGATACG TERM 1004 1066230 - 1066204 - G 81 -2.9 -5.28481 | gap 1, opp_overlap 1066227, overlap 1066208 GAGGCAATGAAAAAA GTCAGGCGCTTG ACGC CAAGC-CCGGCC ATGCTGTCCTGCTTG TERM 1005 1066309 - 1066277 - G 73 -11.9 -3.14125 | overlap 1066275 GGGACAGACGCAACA CGCCTGCTGCACC TGCAAAG GGTGCCGCTGGCG CATCGAGTGGCAAGC impF 1067259 - 1066750 - | hypothetical protein impE 1068079 - 1067252 - | hypothetical protein TERM 1006 1067694 - 1067725 + g 70 -12.2 -2.84098 | opp_overlap 1067704, overlap 1067691 CGGCTCGCTTCCAGT TCGGCAAGCAGGGC CACG GCCTCGCTTGCCGC TCCTTCCTTCAGGGC TERM 1007 1067891 - 1067920 + g 100 -15.1 -4.77036 | ATCCTGCGGCTGGAA GCGGACAGCCAAT TCGC ATTGGCTGTCGGC TTTTTCATAATCGCC impD 1069443 - 1068076 - | hypothetical protein TERM 1008 1069075 - 1069063 - G 70 -4.7 -4.48221 | overlap 1069064 GATGAAGGGACAAAA GGCCG CTG CGGCT ACCGTTGAAAGTCGT TERM 1009 1069533 - 1069507 - R 100 -16.6 -2.94416 | opp_overlap 1069507 GACGTTGACGATAGA GGTCTGCGCGAA GCA CCCGCGCAGACC TTTGATGATCGATCA TERM 1010 1069507 - 1069533 + r 100 -15.2 -3.79747 | opp_overlap 1069507 GACGTTGACGATAGA GGTCTGCGCG AAGCACC CGCGCAGACC TTTGATGATCGATCA impC 1071027 - 1069546 - | hypothetical protein impB 1071615 - 1071100 - | hypothetical protein TERM 1011 1071666 - 1071654 - R 81 -4.8 -5.14563 | opp_overlap 1071655 1071657 1071659 CTGGGCATCAAAAAA TCCG GTAGG CGGA TGCCGAAGCCTCCGC impA 1072767 - 1071691 - | hypothetical protein TERM 1012 1074018 - 1073995 - g 75 -5.9 -4.60889 | overlap 1073998 AAGTATTTCGAAAAA GACGCAGCG CTTACC CGCCGCTTC CAACCCGTGCATGTG TERM 1013 1075065 - 1075075 + G 72 -5.4 -4.54449 | overlap 1075059 1075058 CAAGGCGCATCCCGG TGTC CAG GACA TTTTCTATCAGGTCT TERM 1014 1075605 - 1075582 - g 75 -3.6 -4.77438 | ACCCATGATGAAAAA GGGTTCGGCG TTCG CGCCGGGGCC GCTGGGGAAAAAGAG clpB 1072987 - 1075698 + | ATP-dependent Clp protease ATP-binding subunit Avi_6054 1075761 - 1076237 + | hypothetical protein TERM 1015 1076254 - 1076281 + F 100 -14.8 -4.35483 | overlap 1076256 CCGCCTTTCTCCTGC AGCGGCACCGCC TTCG GGCGGTGCCGTA TTTGTTGTGATGCCG TERM 1016 1076256 - 1076279 + F 100 -19.6 -3.78004 | overlap 1076254 GCCTTTCTCCTGCAG CGGCACCGCC TTCG GGCGGTGCCG TATTTGTTGTGATGC Avi_6056 1076487 - 1076921 + | hypothetical protein secD 1077785 - 1080304 + | protein-export membrane protein SECD TERM 1017 1080348 - 1080309 - T 100 -16.4 -3.14931 | opp_overlap 1080309 1080313, overlap 1080311 1080313 TCGAGGCTTGATCAA CAGATCCCCGCTGCCGTC CACT GACGGCAGCGGGGCTATC GTTTATGCTGCGTCT TERM 1018 1080309 - 1080349 + T 100 -16.2 -3.99062 | gap 1, opp_overlap 1080309 1080311 1080313, overlap 1080313 TCGAGGCTTGATCAA C-AGATCCCCGCTGCCGTC CACT GACGGCAGCGGGGCTATCG TTTATGCTGCGTCTT TERM 1019 1080346 - 1080311 - T 100 -19 -3.1372 | opp_overlap 1080309 1080313, overlap 1080309 1080313 GAGGCTTGATCAACA GATCCCCGCTGCCGTC CACT GACGGCAGCGGGGCTA TCGTTTATGCTGCGT TERM 1020 1080313 - 1080344 + T 100 -21.6 -3.07455 | opp_overlap 1080311 1080309 1080313, overlap 1080309 GGCTTGATCAACAGA TCCCCGCTGCCGTC CACT GACGGCAGCGGGGC TATCGTTTATGCTGC TERM 1021 1080344 - 1080313 - T 100 -21.6 -3.12895 | opp_overlap 1080313 1080309, overlap 1080311 1080309 GGCTTGATCAACAGA TCCCCGCTGCCGTC CACT GACGGCAGCGGGGC TATCGTTTATGCTGC Avi_6060 1081715 - 1080351 - | hypothetical protein TERM 1022 1080876 - 1080858 - G 71 -7.3 -4.1721 | opp_overlap 1080866 ATGCACATCCCAAAA GGGGCGC AGATG GCGCACC AGGCGCCGCCTCTCA TERM 1023 1081773 - 1081743 - R 78 -11.2 -3.53012 | opp_overlap 1081743 GGCTGCTCCGGTAAA GCCGCCACCAAT GATGGCG ATTGTTGGCGGC TTTTTGGCCTGAGAC TERM 1024 1081743 - 1081773 + r 100 -11.2 -4.62069 | opp_overlap 1081743 GGCTGCTCCGGTAAA GCCGCCACCAAT GATGGCG ATTGTTGGCGGC TTTTTGGCCTGAGAC acd 1082863 - 1081883 - | acyl-CoA dehydrogenase TERM 1025 1082894 - 1082878 - R 72 -5.8 -4.30719 | opp_overlap 1082878 GCGTGGCATAAGAAA GCTCGG GGCCA CCGAAC TCCTTTGGGACATTG TERM 1026 1083081 - 1083094 + r 70 -3.7 -4.64657 | overlap 1083074 1083090 ATGGGACGCGGGATG GCAGG TATT CCGGC TTTTTCCGGCTTTGC Avi_6062 1084274 - 1083165 - | monooxygenase TERM 1027 1083561 - 1083574 + g 74 -8.1 -4.10429 | opp_overlap 1083550 GGCATTCATGCCAAT CCTGG TGCG CCAGG TTTTGCCGAATAGTT Avi_6064 1084565 - 1084936 + | transcriptional regulator ArsR family arsB 1084941 - 1086035 + | arsenical pump membrane protein arsC 1086032 - 1086454 + | arsenate reductase arsH 1086456 - 1087154 + | arsenical resistance protein ArsH TERM 1028 1088051 - 1088081 + G 79 -7.4 -4.63218 | TTGGCACTGGTTTCG GCGCTGCTGATGCC GGG GGCAGTTGCGGTGC TTTTGTTGACGGCGC TERM 1029 1088336 - 1088320 - g 83 -13.7 -3.33696 | opp_overlap 1088322 GGCTCTTGCAATCAA CACCGCC ATT GGCGGTG TTGCGGTCCTCGCCT Avi_6069 1087151 - 1088401 + | hypothetical protein kdpE 1089109 - 1088423 - | two component response regulator TERM 1030 1088465 - 1088488 + g 73 -3 -4.74706 | CCCGGCTTCGGTGAG GATGATTGCC GGTT GGCTTTCGTC TTTTTCAATCTTGGC kdpD 1091814 - 1089106 - | two component sensor kinase TERM 1031 1090437 - 1090418 - G 80 -5 -4.94262 | GAGATGAAAAAGAAA TTATAGGC CAGC GCCGATAA CACGGAGGTCAGAAC TERM 1032 1090641 - 1090651 + g 70 -2.4 -4.84146 | AAAAGGTTTTCGTCA GCCC GAC GCGC TTTGTTTTCTCTGGT TERM 1033 1091257 - 1091286 + g 71 -10 -3.53224 | CAGTTCTTCCGGTGG CAGGTCGATGAG CACGAC CACATCGGCCTG TTTCAACACCCGGTC TERM 1034 1091671 - 1091646 - G 87 -14.7 -3.34104 | CGATAACGATATCAA TGCCCGCCGTC TTTT GACCGCGGGCA CGTGATAACATGGCA kdpC 1092399 - 1091824 - | K+-transporting ATPase C subunit kdpB 1094465 - 1092402 - | K+-transporting ATPase B subunit TERM 1035 1092782 - 1092808 + g 76 -13 -3.04322 | opp_overlap 1092771 CAATCTCGATCAGCT TGGTCGGGCTGG AAT CCAGATCGACCA TATTGGCGGCTTCAC kdpA 1096193 - 1094484 - | K+-transporting ATPase A subunit TERM 1036 1096218 - 1096266 + r 78 -12.4 -2.86164 | gap 1, opp_overlap 1096211 1096209 1096253 CGGAAAGAGGGATTG CGTCCCACATCGTCGTCGCTACG AGAA TGAAGCAACG-CGGTGCGGGACG TCTGATGCTTGGCAG Avi_6076 1098482 - 1096680 - | membrane protein TERM 1037 1099562 - 1099582 + G 82 -8.9 -4.41616 | GTCGAGCGCGACCAG CCGCGCCAG CAG CTGCTGCGG TTTCTTTCCCGCCAT recQ 1098878 - 1100734 + | ATP-dependent DNA helicase RecQ Avi_6078 1100750 - 1102015 + | FAD-dependent monooxygenase dadA 1103294 - 1102029 - | D-amino acid dehydrogenase small subunit TERM 1038 1102964 - 1102978 + g 79 -5.6 -4.71828 | GGCTGTAATCGGCCA GCCGCA GCA TCCGGC TTTTGTTGATCGCGT alr 1104436 - 1103312 - | alanine racemase Avi_6081 1104593 - 1105027 + | transcriptional regulator Avi_6082 1105129 - 1105821 + | transcriptional regulator GntR family Avi_6083 1105923 - 1106525 + | hypothetical protein Avi_6084 1106540 - 1107376 + | hydrolase TERM 1039 1107940 - 1107900 - g 83 -8.2 -4.56597 | gap 1, opp_overlap 1107899 GCCCTTGCCGAAAAA GCGGTCAG-TGCCGCCAGC GATG GCCCGCTGCATCTGAGCGC CGTTATCGAGCGGGA Avi_6086 1107408 - 1108328 + | flavoprotein oxidoreductase Avi_6087 1108332 - 1109369 + | alkanal monooxygenase alpha chain dhaS 1109374 - 1110837 + | aldehyde dehydrogenase TERM 1040 1111049 - 1111036 - g 83 -8.1 -4.60487 | opp_overlap 1111036 CAGGACGTGCAAAAA TCCGC CTGG GCGGA TAAATTCACCGCCAA TERM 1041 1111250 - 1111278 + G 74 -2.4 -4.95167 | gap 1, overlap 1111252 CCACGCTCGATCCGC GTTTCGTGACGGA TTAT TCCGTCG-GCAGC TTTTATTATTCCTTC TERM 1042 1111702 - 1111718 + G 74 -10.9 -3.54424 | opp_overlap 1111699 1111702 AAGAACAAGGAAGCA GCGATGA AGT TCATCGC TTTCGCAACCTCGCC Avi_6089 1110919 - 1111929 + | ABC transporter substrate binding protein (polyamine) TERM 1043 1111987 - 1111947 - f 71 -9.6 -3.53745 | opp_overlap 1111930 1111929 1111975, overlap 1111930 1111944 1111943 1111951 CATACTCTAAAGTAA GGCATTTCCGGCACCGTA AACCA TACGGTGCCGGAGCGTCC TCAGCGTTACGGCAT TERM 1044 1111983 - 1111951 - f 73 -12 -2.6342 | opp_overlap 1111975, overlap 1111947 1111944 1111943 CTCTAAAGTAAGGCA TTTCCGGCACCGTA AACCA TACGGTGCCGGAGC GTCCTCAGCGTTACG Avi_6090 1112017 - 1112919 + | ABC transporter membrane spanning protein (polyamine) TERM 1045 1112976 - 1112992 + G 71 -7.9 -4.06384 | overlap 1112989 TTTTGCTGGTCATCA CGCTGCT GAC GGCGGCG TTTCTCCTGTTGCCA Avi_6091 1112921 - 1113721 + | ABC transporter membrane spanning protein (polyamine) Avi_6092 1113718 - 1114794 + | ABC transporter nucleotide binding/ATPase protein (polyamine) TERM 1046 1115032 - 1115057 + G 91 -12.5 -4.09685 | opp_overlap 1115015 GACGCTGCCGTTCAG GCGGCAATCGC GGCG GCGGATGCCGC TTTTCAACAATGGCG TERM 1047 1115645 - 1115635 - g 83 -5.4 -5.0133 | CAGGCTCTGAAAAAA TCCA CCA TGGA GTTGGGAGGAGCTGA attK 1114954 - 1116345 + | NAD-dependent succinate aldehyde dehydrogenase TERM 1048 1116407 - 1116361 - T 100 -13.8 -4.09685 | opp_overlap 1116366, overlap 1116366 TTTTAGCGCGTAAAA TCAAACGCTCACCTCGGTCT GTTTATA AGGTCGAGGTGGGCGTTTGA CGTAAAGGGACGTTG TERM 1049 1116402 - 1116366 - T 76 -7.9 -4.19735 | opp_overlap 1116366, overlap 1116361 GCGCGTAAAATCAAA CGCTCACCTCGGTCT GTTTATA AGGTCGAGGTGGGCG TTTGACGTAAAGGGA TERM 1050 1116366 - 1116402 + T 100 -14.5 -3.59979 | opp_overlap 1116361 1116366 GCGCGTAAAATCAAA CGCTCACCTCGGTCT GTTTATA AGGTCGAGGTGGGCG TTTGACGTAAAGGGA Avi_6094 1117271 - 1116447 - | hypothetical protein TERM 1051 1117118 - 1117138 + g 83 -13.3 -3.61398 | opp_overlap 1117130 1117131 CCTGGGTTTCCGCCG CCTGGACCA GAA TGGTCCGGG TTATTCCGGCCCGGC Avi_6095 1117717 - 1117292 - | hypothetical protein fdh 1118768 - 1117737 - | D-threo-aldose 1-dehydrogenase TERM 1052 1117824 - 1117834 + g 72 -4.6 -4.57569 | overlap 1117816 AATATTGGTGGAGAT CTGC TCT GCGG TTTTTGCGCCGATCA TERM 1053 1118527 - 1118541 + g 76 -3.5 -4.96848 | GTGCTGATCGTCCAG TCTCG TTGCT CGGGA TTTTTCTCTCGCAAC Avi_6097 1119792 - 1118785 - | ABC transporter membrane spanning protein (sugar) TERM 1054 1119487 - 1119459 - G 90 -16.7 -3.18735 | overlap 1119448 CCAACAGGCCAGCAA GACAGGCCATGGC CCA GCCCTGGCCTGCC GCAACCAGCGCTGCC rbsC 1120788 - 1119796 - | ABC transporter membrane spanning protein (ribose) rbsA 1122293 - 1120785 - | ABC transporter nucleotide binding/ATPase protein (ribose) TERM 1055 1121243 - 1121231 - G 74 -7.7 -4.11216 | opp_overlap 1121237 GCGTCATGTTGAAAA TCACG TTG CGTGA CAGGGTCAGGCCTTC Avi_6100 1123402 - 1122365 - | carbohydrate binding protein Avi_6101 1124557 - 1123445 - | dehydrogenase Avi_6102 1124848 - 1125537 + | transcriptional regulator GntR family garD 1125534 - 1127066 + | D-galactarate dehydratase TERM 1056 1127510 - 1127522 + G 75 -10.5 -3.74872 | opp_overlap 1127498 GAAGGCGGCATTGCC CCGGC CTG GCCGG TTTCCTACGATGAGT Avi_6104 1127177 - 1128742 + | dehydrogenase Avi_6105 1128777 - 1129574 + | short-chain dehydrogenase/reductase Avi_6106 1129605 - 1130729 + | glycerol dehydrogenase protein tctE 1132157 - 1130754 - | two component sensor kinase tctD 1132834 - 1132154 - | two component response regulator TERM 1057 1133218 - 1133192 - g 70 -3.6 -4.62069 | overlap 1133193 CTTCCAGGCGAAAAA TCCCGATATCGC GGT GCGCTACGAGGA CATGCTGACCAGCGA Avi_6109 1132962 - 1134086 + | ABC transporter substrate binding protein (iron) Avi_6110 1134339 - 1135283 + | hypothetical protein TERM 1058 1135337 - 1135315 - g 95 -17.7 -3.54029 | opp_overlap 1135302 1135301 1135299 CTTGACCAATGAGAA GCGCCGCCC TGACT GGGCGGCGC TTGCAATCGCAGTGT Avi_6111 1135280 - 1135774 + | hypothetical protein TERM 1059 1136297 - 1136313 + G 70 -5 -4.45664 | CGGTGACTCGGCATT GCGCGG ATTGA CCTCGC TTTTCATTGGCTTCA Avi_6112 1135797 - 1137314 + | hypothetical protein TERM 1060 1137387 - 1137334 - f 100 -23.6 -4.07885 | gap 3, opp_overlap 1137345, overlap 1137338 1137345 CAGTCCGGGCGAAAA TG-AACAGCCAACAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTGTT--CTGTTTCA TTCGAGCAAATTCTC TERM 1061 1137382 - 1137338 - f 100 -24.6 -3.66908 | gap 2, opp_overlap 1137345, overlap 1137334 1137345 CCGGGCGAAAATGAA CAGCCAACAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTGTT--CTG TTTCATTCGAGCAAA TERM 1062 1137377 - 1137345 - f 100 -29.3 -3.2348 | opp_overlap 1137345, overlap 1137338 1137334 AAAATGAACAGCCAA CAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTG TTCTGTTTCATTCGA TERM 1063 1137345 - 1137377 + F 100 -29.3 -3.90298 | opp_overlap 1137345 1137338 1137334 AAAATGAACAGCCAA CAGCCCCCTGCGCCA TTA TGGCGCAGGGGGCTG TTCTGTTTCATTCGA Avi_6114 1137606 - 1137773 + | hypothetical protein TERM 1064 1137798 - 1137824 + T 100 -22.4 -5.18726 | opp_overlap 1137798, overlap 1137823 TATCCGCTTGTAAAA GCCCGCCAGTTG AAC CAACTGGCGGGC TTTTTGTTGTAGGAA TERM 1065 1137824 - 1137798 - T 100 -22.4 -4.07885 | opp_overlap 1137798 1137823 TATCCGCTTGTAAAA GCCCGCCAGTTG AAC CAACTGGCGGGC TTTTTGTTGTAGGAA TERM 1066 1137823 - 1137843 + T 71 -3.3 -4.73682 | opp_overlap 1137798, overlap 1137798 TGAACCAACTGGCGG GCTTTTTGT TGT AGGAAAAGC TTTTGTCTTATGCAG Avi_6115 1138929 - 1137868 - | hypothetical protein TERM 1067 1138441 - 1138458 + g 75 -4.1 -4.77036 | gap 1 ATGCTTTTCGATAAA GGCGATCC AAT GGA-CGTC TTTTTCCTGATCGAA TERM 1068 1138819 - 1138795 - G 70 -2.1 -4.84527 | gap 1, opp_overlap 1138804, overlap 1138797 CGCACAGATGAAAAA GACGC-TGGC CATGCC GCCAAGCGTG CCTGTCATGTTCCAG TERM 1069 1139293 - 1139272 - R 100 -10.9 -4.93696 | opp_overlap 1139272, overlap 1139266 GCTAAAGACGAAAAA GGTGGAGAA ATCA TCCTCCACC TTCATCTGTCGTCTT pcaF 1140531 - 1139326 - | beta-ketoadipyl CoA thiolase pcaJ 1141230 - 1140541 - | 3-oxoadipate CoA-transferase subunit B pcaI 1141934 - 1141227 - | 3-oxoadipate CoA-transferase subunit A TERM 1070 1142495 - 1142513 + G 82 -10.2 -4.25104 | overlap 1142496 CGCTTGCCAGCCTAT TCCGCCTC CAT GGGGCGGG TTTTGCTGGCCGGAG pcaR 1142036 - 1142842 + | transcriptional regulator IclR family pobR 1143743 - 1142817 - | transcriptional regulator AraC family TERM 1071 1142849 - 1142868 + g 83 -9.2 -4.32233 | CTGCGCTGATCTCTG CCTGCGCG CGGT CGCTCAGG TTTTGGAGTTTTTGT TERM 1072 1143691 - 1143703 + g 77 -2.6 -5.04385 | TGCAGCAAAAACTCA CCGG AAACC TCGG TTTTTTCGCCATATA TERM 1073 1144304 - 1144289 - g 84 -6.8 -4.7497 | GTCACCTATGAAAAA GATGGC GTAA GCCACC GGATCGACTGCGATT TERM 1074 1144880 - 1144914 + G 95 -13.7 -4.30576 | gap 1 GTGTGGAAGGCTGTG CGGTTC-TCATGGTGG ATGA CCACCATGATGCACCG TTTTCCTGATACCGG pobA 1143860 - 1145032 + | 4-hydroxybenzoate 3-monooxygenase pcaQ 1145895 - 1145041 - | pca operon transcription factor PcaQ TERM 1075 1145798 - 1145770 - G 70 -12.3 -2.81187 | overlap 1145761 AAAGACCTCACCATA GCGAGTGATGCGG ATG CCGCGCCCCTCGC GCTCAAACAGGCTGA TERM 1076 1146739 - 1146749 + G 83 -8.2 -4.57755 | TTGCGGCCTTGATTG CCGG TAG CCGG TTTTCTGTCGTGGCT pcaD 1146054 - 1146845 + | 3-oxoadipate enol-lactonase TERM 1077 1146871 - 1146861 - f 85 -6.8 -4.84182 | CCAAAAAACAACAAA CGAC ATC GTCG CGGAGACAGAGCGGA pcaC 1146888 - 1147298 + | 4-carboxymuconolactone decarboxylase pcaH 1147344 - 1148084 + | protocatechuate 3,4-dioxygenase beta subunit pcaG 1148086 - 1148703 + | protocatechuate 3,4-dioxygenase alpha subunit TERM 1078 1149251 - 1149277 + G 85 -10.8 -4.28432 | opp_overlap 1149250 GCAACGACACCAAGC CCGTCTGCGAGT TTT GCTCGCCGATGG TTTTGCCTTGCAATT pcaB 1148712 - 1149770 + | 3-carboxy-cis-cis-muconate cycloisomerase TERM 1079 1149834 - 1149845 + T 77 -7.2 -4.56597 | TCACATCAATCACCA CCCG GCCA CGGG TTTTTCCAGCAAGGA Avi_6131 1150806 - 1149811 - | zinc-binding alcohol dehydrogenase TERM 1080 1150326 - 1150296 - G 90 -11.1 -4.27316 | gap 1, overlap 1150317 CCTGCGAAGCCAAAA GGCTGACGGCCATG GAGC CAAGGCCGCC-GCC AGCCCCTGTTACCAG TERM 1081 1151993 - 1152018 + G 77 -2.5 -5.06451 | gap 1, overlap 1151978 1151965 1151981 1152001 CTGCGGTCGCTACAG CGCAGTTGTCGG TGT CCGATT-TTGCG TTTTTTGAAATGCTC TERM 1082 1152001 - 1152011 + G 76 -6.8 -4.5366 | overlap 1151965 1151981 1151993 GCTACAGCGCAGTTG TCGG TGT CCGA TTTTGCGTTTTTTGA ftsK 1151218 - 1154082 + | ftsK cell division protein TERM 1083 1154237 - 1154189 - T 100 -13.9 -5.22258 | opp_overlap 1154193, overlap 1154193 1154196 CAAACGAAAACAAAA GAAACAAGACTCTGTCTGGTTCA ATC TGAACCTGACAGAGTCTAGGCGC ATAATAGATACCAAC TERM 1084 1154233 - 1154193 - T 100 -19.9 -5.04377 | opp_overlap 1154193, overlap 1154189 1154196 CGAAAACAAAAGAAA CAAGACTCTGTCTGGTTCA ATC TGAACCTGACAGAGTCTAG GCGCATAATAGATAC TERM 1085 1154230 - 1154196 - T 100 -20.2 -4.53966 | opp_overlap 1154193, overlap 1154193 1154189 AAACAAAAGAAACAA GACTCTGTCTGGTTCA ATC TGAACCTGACAGAGTC TAGGCGCATAATAGA TERM 1086 1154252 - 1154278 + T 100 -16.6 -4.4267 | opp_overlap 1154252 CATAATAGATACCAA CGCCGTGCCTCT GCT AGGGGCATGGCG TTTTGCATTTTAACG TERM 1087 1154278 - 1154252 - T 83 -12.2 -3.38966 | opp_overlap 1154252 CATAATAGATACCAA CGCCGTGCCTCT GCT AGGGGCATGGCG TTTTGCATTTTAACG Avi_6134 1155355 - 1154309 - | ABC transporter Avi_6135 1156893 - 1155352 - | ABC transporter membrane spanning protein TERM 1088 1156587 - 1156577 - G 74 -6.8 -4.3739 | TAGCTGTGCACAAAA GCTG GAA CAGC AAGTGGCGTCACCAT TERM 1089 1157034 - 1157011 - R 100 -16.8 -5.05782 | overlap 1156997 ATTGACTCTAAAAAA GGCAATCGCC GATT GGCGATTGCC CTAAGCCTTTCTTGA Avi_6136 1158133 - 1157144 - | ABC transporter substrate binding protein (iron) TERM 1090 1157435 - 1157453 + g 72 -5.2 -4.42619 | overlap 1157448 ATGCTTGAAATAATG CAGTGCCA CGT TGCCGCTG TTTTCTGCGGTCTTG TERM 1091 1158339 - 1158351 + r 72 -6.2 -4.3739 | opp_overlap 1158339 GGCCGTGGGAATGAA GGGC TCGAT GCCC TTTTATCGCACGCTA Avi_6137 1160642 - 1158465 - | hypothetical protein TERM 1092 1159284 - 1159272 - G 70 -4.1 -4.57073 | overlap 1159273 TATGGTCTCGAAAAA CTTCC AGA GGAAA CCGCAGACAAAGGCG TERM 1093 1160757 - 1160781 + r 100 -14.3 -4.24123 | opp_overlap 1160757 ATTTTCATGCAAAAA TGGCGCGAAAC CGA GTCTCGCGCCA TTTTCCAGTTATTAG TERM 1094 1160781 - 1160757 - R 100 -16.5 -4.66163 | opp_overlap 1160757 ATTTTCATGCAAAAA TGGCGCGAAAC CGA GTCTCGCGCCA TTTTCCAGTTATTAG Avi_6139 1161277 - 1160804 - | hypothetical protein TERM 1095 1161761 - 1161740 - g 70 -3.7 -4.59773 | gap 1, opp_overlap 1161752, overlap 1161742 TGCGAGTTTCAAAAA TC-GACCGCA CCT TTCGGTCTGA CCAAATTCTGCATCT Avi_6140 1161500 - 1161862 + | hypothetical protein exsA 1162623 - 1164434 + | ABC transporter nucleotide binding/ATPase protein TERM 1096 1164510 - 1164454 - T 76 -3.8 -4.98255 | gap 2, opp_overlap 1164472, overlap 1164448 1164455 1164472 TTCCAACGACAAAAA TGC-TTTG-CGTCATACCAAGGGCCATT GAA AATGGCCCTTGGTATCAGGTCTGCCGCA TAGCGTTGTGGCATT TERM 1097 1164472 - 1164490 + T 89 -13.2 -3.27498 | opp_overlap 1164455 1164454 1164472 TTTGCGTCATACCAA GGGCCATT GAA AATGGCCC TTGGTATCAGGTCTG TERM 1098 1164490 - 1164472 - T 85 -13.2 -3.25823 | opp_overlap 1164472, overlap 1164455 1164454 TTTGCGTCATACCAA GGGCCATT GAA AATGGCCC TTGGTATCAGGTCTG Avi_6144 1165798 - 1164497 - | Signal transduction histidine kinase TERM 1099 1165812 - 1165779 - G 80 -2.3 -5.22794 | opp_overlap 1165789, overlap 1165768 1165789 ACAATGACGAAAAAA CGCCAGAAAAGCCGA GGCA TCAGCTATCCTGTAG CAGAATGTAACCCTG TERM 1100 1165802 - 1165789 - G 70 -4.5 -4.47485 | opp_overlap 1165789, overlap 1165779 AAAAACGCCAGAAAA GCCGA GGCA TCAGC TATCCTGTAGCAGAA Avi_6145 1166487 - 1165798 - | two component response regulator TERM 1101 1166949 - 1166961 + G 70 -2.6 -4.86861 | AAACTTTTGCTGATG GGGC TGCTC GCTC TTTGTTTCTTTCTTG Avi_6146 1166745 - 1167497 + | membrane protein TERM 1102 1167611 - 1167597 - T 83 -10 -4.08394 | AGATTCTGTTGAAAA CCAGAC AGA GTCTGG ATGTCGGAATACGGC TERM 1103 1167770 - 1167798 + T 90 -9.7 -4.31815 | opp_overlap 1167770 TAGTTACAAGCAAAA GTGTCAAACCT TTGGGTT GGGTTTGACAC TTTATGTTCTACTTT TERM 1104 1167798 - 1167770 - T 90 -9 -4.50058 | opp_overlap 1167770 TAGTTACAAGCAAAA GTGTCAAACC TTTGGGTTG GGTTTGACAC TTTATGTTCTACTTT Avi_6147 1168834 - 1167800 - | Integrase Avi_6148 1169101 - 1168847 - | hypothetical protein TERM 1105 1169718 - 1169733 + r 72 -10.4 -3.38812 | overlap 1169715 TAGAACTTTGCGTGC CGCCGA CATC TCGGCG TATTCTTGGCGGCGC TERM 1106 1170016 - 1170038 + r 70 -6.2 -4.27316 | overlap 1170002 1170001 CGCGCCAAAATTTGC GCTCGGTTTG CCT CATATCGGGC TTTTGCCTTGGCGGC Avi_6150 1170488 - 1170141 - | bacteriophage protein TERM 1107 1170174 - 1170195 + g 71 -7.3 -4.22748 | gap 1, opp_overlap 1170160, overlap 1170187 AGCGAATGCCCGCTT CGCCTGTTCG CGC CGAA-GGGCG TTTCGTTTCTTGGTG Avi_6151 1171625 - 1170804 - | hypothetical protein TERM 1108 1171468 - 1171479 + g 75 -3.6 -4.84359 | overlap 1171471 CCGATCAACTCGTAT GTGC TGCC GCGC TTTTTGTGGCGGTGC Avi_6152 1172365 - 1171622 - | hypothetical protein Avi_6153 1172892 - 1172347 - | hypothetical protein dnaN 1174021 - 1172885 - | DNA polymerase III beta subunit Avi_6155 1174587 - 1174222 - | hypothetical protein Avi_6157 1175061 - 1174738 - | hypothetical protein Avi_6158 1175548 - 1175228 - | hypothetical protein Avi_6161 1176852 - 1175980 - | transcriptional regulator Avi_6162 1177267 - 1176917 - | hypothetical protein TERM 1109 1176958 - 1176942 - G 78 -8.7 -4.11216 | GCTTGATTTTCAAAA GCGATGA CAT TCACCGC ATCAACCAAAGCTGA TERM 1110 1177121 - 1177135 + g 79 -7.1 -4.70659 | opp_overlap 1177111 GAGACCGGCGTTCTC GCTGC ATCGC GCAGC TTTTTCCATCTGCGC Avi_6163 1177459 - 1178076 + | hypothetical protein Avi_6164 1178083 - 1178481 + | hypothetical protein Avi_6165 1179360 - 1179028 - | hypothetical protein Avi_6166 1179433 - 1179627 + | hypothetical protein TERM 1111 1179684 - 1179719 + G 100 -13.2 -5.08601 | gap 1, overlap 1179685 GACTTGCGCGGTCAT TGCAGCCGGGCG-GGCG GAC CTTCACGCCCGGCTGCC TTTTTATTCCAATAC TERM 1112 1179685 - 1179718 + G 100 -16.7 -3.64438 | gap 1, overlap 1179684 ACTTGCGCGGTCATT GCAGCCGGGCG-GGCG GAC CTTCACGCCCGGCTGC CTTTTTATTCCAATA TERM 1113 1179849 - 1179887 + G 72 -8.8 -3.93782 | gap 1, overlap 1179849 ATCCTTCGCCGGGTT GTGG-TGCTGGCCGCGA CCGCCA TTGCGGCCAGCTTCCCC TTTGATCTTCGCTCC TERM 1114 1179931 - 1179958 + G 100 -17 -4.67353 | TGGGGCAATGCGCGA GCGGCCTGAGGC GATG GCTTCGGGCCGC TTTTTGCGTGGGTGG Avi_6167 1179624 - 1180028 + | hypothetical protein Avi_6168 1180097 - 1180555 + | hypothetical protein TERM 1115 1181504 - 1181519 + G 70 -2.4 -4.82667 | overlap 1181496 GGCGTTTGACGCTGG CGACGT GCAG GCGGCG TTTTTGCTGTCATCC TERM 1116 1181728 - 1181746 + G 84 -7.4 -4.74103 | opp_overlap 1181728 GCGGACGGCCCGAAA CGGTCC AAGGTGA GGACCG TTTTTCGCTTGAAGA Avi_6173 1181421 - 1183196 + | hypothetical protein Avi_6175 1183422 - 1183769 + | hypothetical protein Avi_6177 1183766 - 1184938 + | DNA-cytosine methyltransferase TERM 1117 1184952 - 1184926 - f 74 -10.8 -3.14132 | GCTTCTTGCTATGAA GGTGACGGCATG AGC CACGACGCCACC AATTGGGCCATTCGC TERM 1118 1185258 - 1185234 - g 100 -14.3 -4.386 | overlap 1185235 1185247 CAAGGTTTCAGAAAA GCCGTGTCCAG AAT CTGGACACGGA CAAGAGGACGCCGTG TERM 1119 1185257 - 1185235 - g 93 -17.8 -3.22678 | overlap 1185234 1185247 AAGGTTTCAGAAAAG CCGTGTCCAG AAT CTGGACACGG ACAAGAGGACGCCGT TERM 1120 1186102 - 1186130 + G 71 -12.3 -2.94872 | overlap 1186098 1186096 GCTGAGAACTTCCTC CCCTTCGTGCCGG ATA CCGGCGCGATGCG TGTGGTCTATTTCCC Avi_6178 1184935 - 1186230 + | hypothetical protein TERM 1121 1187019 - 1187037 + F 100 -11.7 -4.5442 | opp_overlap 1187019 ATGATTGACAGACAA GGCGACC AATGC GGTCGCC TTTTGTCGTTAAAGA TERM 1122 1187037 - 1187019 - f 88 -12.4 -3.60792 | opp_overlap 1187019 ATGATTGACAGACAA GGCGACCA ATG CGGTCGCC TTTTGTCGTTAAAGA Avi_6179 1187055 - 1187486 + | prophage LambdaSo holin Avi_6181 1187623 - 1188264 + | phage terminase small subunit P27 family Avi_6182 1188275 - 1190017 + | phage terminase-like protein large subunit TERM 1123 1190236 - 1190216 - g 74 -11.1 -3.57144 | opp_overlap 1190215 GCCTGCATTGCGAAA GCATCGGCA TGT TGCCGCTGC ATCTGATGTATCAGG Avi_6184 1190017 - 1191261 + | portal protein Avi_6185 1191239 - 1192093 + | ClpP-type protease Avi_6186 1192103 - 1193518 + | phage major capsid protein HK97 family TERM 1124 1193503 - 1193520 + F 72 -7.7 -3.91897 | opp_overlap 1193505 CATCAAGCTCCTGAA GATCGGC ACAA GCTGATC TTTCTCGGTCAGGCG Avi_6187 1193571 - 1194008 + | hypothetical protein TERM 1125 1193990 - 1194008 + F 70 -5.9 -4.21974 | overlap 1193991 TGGCTTCAACAATCC GCAGGCC AATCA GGCCTGA TTTATTCGATAATGG TERM 1126 1194022 - 1194047 + F 81 -10.3 -3.99592 | opp_overlap 1194021 1194022, overlap 1194023 GATTTATTCGATAAT GGCGGGGCCGG GTTT TCGGCCCTGCA TTTCTCCTGATGGGT TERM 1127 1194023 - 1194046 + F 87 -13.8 -2.99273 | opp_overlap 1194021 1194022, overlap 1194022 ATTTATTCGATAATG GCGGGGCCGG GTTT TCGGCCCTGC ATTTCTCCTGATGGG Avi_6188 1194071 - 1194667 + | hypothetical protein Avi_6189 1194667 - 1194987 + | Bacteriophage head-tail adaptor TERM 1128 1195194 - 1195207 + G 70 -3.7 -4.56597 | opp_overlap 1195194 GACAAAGTTGACCAA GCGCC AGGC GACGC TTTTTCAGAAGCAAA TERM 1129 1195295 - 1195305 + G 83 -8.2 -4.58395 | opp_overlap 1195294 GGAATGATGAACAGG CGGC GGA GCCG TTTTTGAGGCCTGCC Avi_6190 1194991 - 1195437 + | hypothetical protein Avi_6192 1195441 - 1195836 + | hypothetical protein TERM 1130 1195986 - 1195972 - g 78 -11.4 -3.75153 | CCCCGCCAAGCGAAA CCACCG ACA CGGTGG ATGTAACGCACCAGC TERM 1131 1196310 - 1196332 + G 74 -11.2 -3.61764 | overlap 1196328 GCGCCTGCTGTGGTC GGCACGCCGA CCG TTGGCGCGCC TTTGACGCTTGATCC Avi_6193 1195854 - 1196540 + | outer capsid protein Hoc Avi_6194 1196548 - 1196931 + | hypothetical protein TERM 1132 1197178 - 1197158 - g 86 -6.7 -5.00138 | overlap 1197160 CATCGAAAGCAAAAA GTCGGAGGC ACC GCCTGCGGC TGCTACCAAAAACGA Avi_6195 1196994 - 1197245 + | hypothetical protein TERM 1133 1197814 - 1197836 + G 73 -11.2 -3.41689 | opp_overlap 1197809, overlap 1197810 1197818 TCTTGCAATAGCGCA GGCTGGCGGC GCG GCTGGCAGCC TTGGTGTCTCTTTTG TERM 1134 1198064 - 1198053 - g 70 -2.2 -4.74706 | CGGAACAGCTAAAAA CCAA GATG TCGG GCCTGTCTGATGAAG Avi_6196 1197356 - 1199635 + | phage tail protein TERM 1135 1200231 - 1200242 + G 70 -3.6 -4.60889 | GCTGGTGCCTGTGCT GGCT ATGC GGCC TTTTTCCACGTCCTT Avi_6197 1199635 - 1200354 + | hypothetical protein TERM 1136 1200554 - 1200566 + G 71 -10.5 -3.53012 | CAGCATTGGCGCGGT GCGCG ATC CGCGC TTTGGCGAGGCGGCG Avi_6198 1200357 - 1200938 + | Transcription elongation factor Avi_6199 1201228 - 1200917 - | hypothetical protein TERM 1137 1201128 - 1201118 - G 77 -2.4 -5.14563 | GCGTTGATCAAAAAA CGCG GCT CGCT GCTGGATCTTTGGTC TERM 1138 1201228 - 1201250 + H 70 -6.2 -4.25104 | overlap 1201243 GCTTATCAATACACA TCTTGCCGGT GTT GTCGGCGGGA TTTTCGTCAAGCCGC TERM 1139 1202134 - 1202151 + G 78 -9.1 -4.14243 | gap 1, overlap 1202135 ATCATCCATGTGATG C-GCCGCG ATC CGCGGCTG TTTTCGCCTGACATG TERM 1140 1202135 - 1202149 + G 84 -12.8 -3.6692 | overlap 1202134 TCATCCATGTGATGC GCCGCG ATC CGCGGC TGTTTTCGCCTGACA Avi_6201 1201345 - 1203510 + | hypothetical protein TERM 1141 1204526 - 1204542 + G 74 -2.2 -4.93365 | overlap 1204528 CGTTATCATCGGAGA GGGAAG GAACA CTTCGC TTTTTAGTTATCCGA TERM 1142 1205165 - 1205181 + G 70 -12.3 -2.83403 | opp_overlap 1205168, overlap 1205164 GGTCTCCGGGTCAAG CGATGCC ATT GGCATCG ATTTGCTGCGGACGG TERM 1143 1205415 - 1205405 - g 71 -6.8 -4.10161 | overlap 1205406 GATCAGCGGGCAAAA CCGT GCG ACGG GCTGCACGACGGCGC dsd 1203654 - 1205477 + | D-serine deaminase TERM 1144 1205753 - 1205741 - f 82 -7.7 -4.45175 | GATTAAAAAAGGAAA CGATC ATG GATCG CGCGAAATTCTTCGC Avi_6204 1205746 - 1206354 + | hypothetical protein TERM 1145 1206407 - 1206431 + F 89 -14.3 -3.14132 | overlap 1206409 TTTCGCGCTCGCCTT TAGCGCCGGGA TTA TCCTGGCGCTG TTGATCGGCGGACAG TERM 1146 1206409 - 1206429 + F 95 -14.7 -3.13403 | overlap 1206407 TCGCGCTCGCCTTTA GCGCCGGGA TTA TCCTGGCGC TGTTGATCGGCGGAC TERM 1147 1206811 - 1206850 + F 70 -4.5 -4.44667 | opp_overlap 1206822, overlap 1206812 1206814 1206822 CGTACCGGCGGAATT TGA-TGACGAAACCAAGGA TGTT TCCATGGTTT-GTCACTCG TTTGTTGTTGACGGG emrA 1206952 - 1207353 + | multidrug resistance efflux pump TERM 1148 1207337 - 1207349 + F 74 -10.5 -3.25823 | opp_overlap 1207336 GGATGTCTAAGCGAT CGCGC CGC GCGCG TTGATATCGCCAGCG Avi_6209 1207610 - 1207930 + | hypothetical protein Avi_6210 1207932 - 1208453 + | hypothetical protein TERM 1149 1208660 - 1208649 - g 72 -5.8 -4.42062 | opp_overlap 1208649 1208656 TAGGCTGGAAAGAAA TCCG CGAC CGGA TTATTGCCGGTTCAT Avi_6211 1208459 - 1208752 + | hypothetical protein TERM 1150 1208787 - 1208810 + T 100 -18.2 -6.20267 | opp_overlap 1208787 TGGTTCAACGCAAAA GCCCCTACGG AATG CCGTAGGGGC TTTTTTTGTTTTTGC TERM 1151 1208810 - 1208787 - T 100 -18.2 -4.27316 | opp_overlap 1208787 TGGTTCAACGCAAAA GCCCCTACGG AATG CCGTAGGGGC TTTTTTTGTTTTTGC TERM 1152 1209014 - 1209042 + T 70 -5.5 -4.31815 | gap 1, overlap 1209010 TAGTTACACGTTGAA TTGTCAAAC-GA TTACGC TCGGTTTGACAA TTTATGTTCTCGTTT surf 1209897 - 1209145 - | SurF1 family protein TERM 1153 1209949 - 1209916 - R 100 -17.5 -3.54459 | opp_overlap 1209906 TCAACCGTCCTGAAA CGGATCGGGCGACAT GCAT ATGCCGCCCGATCGG ATATCGGCGTCCTTA cyoD 1210360 - 1209962 - | cytochrome o ubiquinol oxidase subunit IV cyoC 1210974 - 1210357 - | cytochrome o ubiquinol oxidase subunit III cyoB 1212982 - 1210979 - | cytochrome o ubiquinol oxidase subunit I cyoA 1214135 - 1213023 - | cytochrome o ubiquinol oxidase subunit II TERM 1154 1214556 - 1214537 - H 100 -3.6 -5.69068 | CAAAAACAGAAAAAA TTATTCGC ACCC GGGAATAA GAAAGGGTCCTCGTG Avi_6218 1214585 - 1215184 + | ECF family sigma factor Avi_6219 1215168 - 1215992 + | transcriptional regulator Avi_6220 1216088 - 1216804 + | hypothetical protein TERM 1155 1216846 - 1216883 + T 100 -19.3 -3.21595 | opp_overlap 1216848 1216852, overlap 1216848 1216852 AAATGCAATAGAGAC AATAAAGCCGCCGGTCC TGAG GGATCGGCGGCTTTATG TTGATAGTGGCCCTT TERM 1156 1216848 - 1216881 + T 100 -21.9 -3.17051 | opp_overlap 1216848 1216852, overlap 1216846 1216852 ATGCAATAGAGACAA TAAAGCCGCCGGTCC TGAG GGATCGGCGGCTTTA TGTTGATAGTGGCCC TERM 1157 1216881 - 1216848 - T 100 -19.7 -3.69364 | opp_overlap 1216848 1216846 1216852, overlap 1216852 ATGCAATAGAGACAA TAAAGCCGCCGGTCC TGAG GGATCGGCGGCTTTA TGTTGATAGTGGCCC TERM 1158 1216852 - 1216877 + T 100 -18.3 -4.24745 | opp_overlap 1216848 1216852, overlap 1216848 1216846 AATAGAGACAATAAA GCCGCCGGTCC TGAG GGATCGGCGGC TTTATGTTGATAGTG TERM 1159 1216877 - 1216852 - T 100 -16.1 -4.45484 | opp_overlap 1216852 1216848 1216846, overlap 1216848 AATAGAGACAATAAA GCCGCCGGTCC TGAG GGATCGGCGGC TTTATGTTGATAGTG Avi_6221 1217367 - 1216918 - | pseudoazurin TERM 1160 1217551 - 1217577 + H 73 -9.4 -3.6608 | overlap 1217552 TCAAGAAGCCTGGGG GTGCAAGGTCCA GAC TGGACCTCGCAG TTTCCCTGCGGTGAT TERM 1161 1217552 - 1217576 + H 81 -12.9 -2.79327 | overlap 1217551 CAAGAAGCCTGGGGG TGCAAGGTCCA GAC TGGACCTCGCA GTTTCCCTGCGGTGA nnrU 1217641 - 1218354 + | denitrification regulatory protein TERM 1162 1218927 - 1218950 + G 79 -7.4 -4.66537 | gap 1, overlap 1218927 1218929 TGGCAACGATGTCCT G-ATCGGCGGC GGC GGCGCCGATAC TTTTGTATTCAGCAG exsH 1218532 - 1219959 + | endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein TERM 1163 1219986 - 1220008 + T 100 -14.8 -5.95539 | opp_overlap 1219986 TTCCTCAAACAAAAA GCCCCGGCTG GAT TGGCCGGGGC TTTTTTTGTTTGCAC TERM 1164 1220008 - 1219986 - T 100 -13.4 -5.27335 | opp_overlap 1219986 TTCCTCAAACAAAAA GCCCCGGC TGGATTG GCCGGGGC TTTTTTTGTTTGCAC dctA 1221423 - 1220089 - | C4-dicarboxylate transport protein TERM 1165 1221389 - 1221404 + g 76 -11.8 -3.41229 | opp_overlap 1221380 TAAAATGGGAGCTTG CCGCCC TGCG GGGCGG TTGTGGTAGAAATAT TERM 1166 1221572 - 1221592 + H 74 -7.5 -4.0896 | opp_overlap 1221564 TTGAAAAGCCGCGTT TCAGCCATG ATC CGTGGCGGA TTTTCGCGCGAATTT TERM 1167 1222462 - 1222486 + G 70 -4.1 -4.56597 | CCAGGCAGCGGGATA CCGGACGAGCT TTT GGTGCGTACGG TTTTTCCCGGCGCCA TERM 1168 1222622 - 1222638 + G 86 -4.4 -5.32882 | gap 1 GGCGACTGTTGACCT TGGC-CC TGCT GGCGCCA TTTTTTCTGGTCGTC dctB 1221724 - 1223526 + | two component sensor kinase for C4-dicarboxylate transport dctD 1223523 - 1224899 + | two component response regulator for C4-dicarboxylate transport Avi_6229 1225648 - 1224926 - | transcriptional regulator TetR family Avi_6230 1225981 - 1226277 + | hypothetical protein Avi_6233 1227433 - 1226525 - | transcriptional regulator ROK family nagA 1228632 - 1227430 - | N-acetylglucosamine-6-phosphate deacetylase glmS 1229651 - 1228629 - | glucosamine--fructose-6-phosphate aminotransferase Avi_6236 1230432 - 1229680 - | transcriptional regulator GntR family Avi_6237 1230864 - 1232045 + | oxidoreductase malF 1232055 - 1232939 + | ABC transporter membrane spanning protein (maltose) malG 1232936 - 1233796 + | ABC transporter membrane spanning protein (maltose) TERM 1169 1233903 - 1233917 + G 71 -7.8 -4.08216 | overlap 1233876 GGCGCTGCTGGCAAG CTCGGC TCT GTCGAG TTTTGCGGCGGATAA TERM 1170 1234083 - 1234065 - g 73 -11 -3.41229 | opp_overlap 1234072 1234073 1234076, overlap 1234073 ACAGTGCCAGGACAA GGCAACCA CTT TGGCTGCC GCCGGGACGCCGGTT malE 1233853 - 1235076 + | ABC transporter substrate binding protein (maltose) TERM 1171 1235088 - 1235118 + F 100 -19.8 -5.29846 | opp_overlap 1235081 1235078 GTAAACATCGGGGCT CCGGCTGCGGATCA TCT TGGTTCGCAGCCGG TTTTTGTTTGGAATT malK 1235180 - 1236313 + | ABC transporter nucleotide binding/ATPase protein (maltose/maltodextrin) Avi_6243 1237440 - 1236340 - | hypothetical protein Avi_6244 1238746 - 1237442 - | hypothetical protein TERM 1172 1238144 - 1238158 + g 79 -5.6 -4.84642 | overlap 1238141 AAGGCCAAGTGTGCG GGCCAG CGC CTCGCC TTTTGTTGCTTTGCC Avi_6246 1239454 - 1238963 - | hypothetical protein TERM 1173 1239179 - 1239169 - G 70 -2.4 -4.86731 | TGGTGGTAAAGAAAA TCGC CGT GCGC GGGTCTTCACCGTGG TERM 1174 1239727 - 1239750 + G 78 -8.8 -4.18494 | opp_overlap 1239728, overlap 1239728 TCGAACAGAGCCATA AGGCGATCGG CAAC CTGATCGCCA TTTTGCATGAGGCTG TERM 1175 1239749 - 1239728 - g 73 -10.9 -3.42583 | gap 1, opp_overlap 1239728 1239727 CGAACAGAGCCATAA GGCGATC-GG CAA CCTGATCGCC ATTTTGCATGAGGCT TERM 1176 1239728 - 1239749 + G 73 -12.3 -3.10775 | opp_overlap 1239728, overlap 1239727 CGAACAGAGCCATAA GGCGATCGG CAAC CTGATCGCC ATTTTGCATGAGGCT Avi_6248 1239567 - 1239953 + | translation initiation inhibitor TERM 1177 1240107 - 1240130 + G 72 -4.4 -4.56775 | overlap 1240108 GGCCGAGCGGGCGCA AGTGTCGCCG CCGA CGGTGACCCG TTTTTGCCGCAGGCT Avi_6249 1239973 - 1240836 + | transcriptional regulator RpiR family Avi_6250 1240838 - 1241614 + | short-chain dehydrogenase TERM 1178 1241807 - 1241820 + G 74 -8.1 -4.25104 | opp_overlap 1241816 GAAGGACGACCCGGT CTGCG ACAA CGCAG TTTTCCTGCGACGCA TERM 1179 1242089 - 1242128 + G 71 -10.7 -3.60296 | gap 1 GCCTTTTTCGCTGCT GCCGTGGCCCGTCG-AGG CGAAC CTTGCGGCGGGCGATGGC TTTCCGGTGGCGATC Avi_6251 1241649 - 1243568 + | beta-N-acetylhexosaminidase TERM 1180 1243760 - 1243772 + G 71 -10.5 -3.53091 | CATGCCCGCGCCGTT CCGGG CGG CCCGG TTTCGCGCCAGACCT Avi_6252 1243580 - 1245046 + | hypothetical protein TERM 1181 1245129 - 1245103 - f 82 -11.5 -3.55444 | opp_overlap 1245103 GTCTCACTCCGCAAA GGTGCCGCCGG TGAAG CCAGCGGCAGC TTGTTTTCACAAAGA TERM 1182 1245103 - 1245129 + F 85 -10 -4.17048 | opp_overlap 1245103 GTCTCACTCCGCAAA GGTGCCGCCGGT GAA GCCAGCGGCAGC TTGTTTTCACAAAGA TERM 1183 1245171 - 1245215 + G 100 -8.6 -4.90079 | gap 1, opp_overlap 1245177, overlap 1245172 TGCCGCCAGTTCTCT CCATAATCGCCGCCAATCCGG GTAT CCGGATTAGCG-CGATTGCGA TTTTCTTCTTCGGCT TERM 1184 1245172 - 1245214 + G 77 -12.1 -3.52963 | gap 1, opp_overlap 1245177, overlap 1245171 GCCGCCAGTTCTCTC CATAATCGCCGCCAATCCGG GTAT CCGGATTAGCG-CGATTGCG ATTTTCTTCTTCGGC TERM 1185 1245209 - 1245177 - g 87 -15 -3.28924 | gap 1, opp_overlap 1245172 1245171 CAGTTCTCTCCATAA TCGCCGCCAATCCGG GTAT CCGGATTAGCG-CGA TTGCGATTTTCTTCT TERM 1186 1245763 - 1245775 + G 86 -3.3 -5.58074 | AAGGGCCGAACCCTC CGCAA GTC TGGCG TTTTTTTCATCCTTG TERM 1187 1246095 - 1246107 + G 71 -10.5 -3.53012 | ATGTCTATCTGCTTT CCGGC ATT GCCGG TTTCGGGGCGGCGGC Avi_6253 1245155 - 1246363 + | MFS permease cutC 1246388 - 1247143 + | copper homeostasis protein TERM 1188 1247171 - 1247183 + T 100 -10.5 -4.72272 | overlap 1247180 CTTCCGGTTCAACCT GGCGC GGC GCGCC TTTTTCGTCCAGCGC Avi_6255 1247540 - 1247148 - | acyl-CoA hydrolase Avi_6256 1248359 - 1247700 - | Transcriptional regulator TERM 1189 1249573 - 1249561 - g 83 -7.7 -4.56597 | opp_overlap 1249571 CTGCCGTTGGAAAAA GCTTC CCT GAAGC GTGTCGCGGTTATTG TERM 1190 1249797 - 1249833 + G 80 -4.4 -4.98255 | gap 1, overlap 1249798 1249799 CGTCAATTGTCAGGG TACTCCTGT-TGCAGCG GAAG CGGTGCAGACAGGGGAG TTTTTCTGGTTCGAA Avi_6257 1248589 - 1251060 + | hypothetical protein Avi_6258 1252391 - 1251069 - | two component sensor kinase TERM 1191 1251124 - 1251097 - G 81 -15.6 -2.52464 | opp_overlap 1251085 1251084 CGGGCCTCGAATCCA TCCTGTCGCCCG CTAG CGGGTGACAGGA TGTCGAAGCGGGCAT Avi_6259 1253050 - 1252388 - | two component response regulator TERM 1192 1252429 - 1252449 + g 70 -4 -4.63218 | CAACGCCGCGGACCG TTAGCAAG CGATC CTTGCCAA TTTTCTTGCGCAGCC TERM 1193 1253222 - 1253234 + H 71 -2.6 -4.92314 | ATAAAGGGCAGTCGC GTCG ATAAA CGGC TTTTTCTACGTTCGT Avi_6260 1253311 - 1253571 + | hypothetical protein TERM 1194 1253659 - 1253636 - T 100 -12.4 -5.75945 | ATTGGGCAAAAAAAA GCGCCGCG TTTTGAGG CGCGGCGC TAAAGCAATTCCCGA Avi_6262 1254616 - 1253825 - | hypothetical protein TERM 1195 1253902 - 1253924 + g 74 -7 -4.28361 | overlap 1253894 CCAAGCGCGCCCATT GATGGGCCAT CTG ATGGTCGATC TTTTCATGCAATTGG TERM 1196 1254597 - 1254567 - G 100 -13.3 -4.52589 | gap 1 GGCTCCGACAGAAAA GACCGGGCGCGACA AAAT TGCCGC-CCCGGCC CCCTGATGCATAGCT rhaI 1255946 - 1254654 - | L-rhamnose catabolism isomerase rhaD 1258096 - 1255985 - | rhamnulose-1-phosphate aldolase/alcohol dehydrogenase TERM 1197 1258559 - 1258546 - g 83 -9.5 -4.35091 | AATATCGATAAGAAA CGCGC AATT GCGCG CGCCGCTGTTGAACT Avi_6265 1258297 - 1259109 + | transcriptional regulator DeoR family TERM 1198 1259491 - 1259477 - g 71 -7 -4.15044 | CCTGCTCTGAAGAAA GCTGCG CAG CGCGGC ATCAAGGTGATTTCC rhaS 1259165 - 1260160 + | rhamnose ABC transporter rhamnose-binding protein TERM 1199 1260220 - 1260199 - f 100 -18.7 -3.20991 | opp_overlap 1260195 1260194 1260215 1260216 TCTAAGGCAATCGAA CCCGGCGGC AGCT GCCGCCGGG AACCCTTATCCGTTC Avi_6267 1260267 - 1261802 + | ABC transporter nucleotide binding/ATPase protein Avi_6268 1261812 - 1262813 + | ABC transporter membrane spanning protein TERM 1200 1263024 - 1263014 - g 79 -6.8 -4.67011 | opp_overlap 1263013 1263014 1263022 AATTTCACTGAAAAA GCGA TGA TCGC CTTTGCCATGGCGTT Avi_6269 1262810 - 1263823 + | ABC transporter membrane spanning protein rhaU 1263826 - 1264149 + | L-rhamnose 1-epimerase TERM 1201 1265245 - 1265270 + G 70 -11.9 -2.77899 | overlap 1265242 1265247 CGGCGAGCCTTTATA CGGCGATGATG ACGG CATCGTCGCTG TCGTTGATCGGCGCG Avi_6271 1264146 - 1265552 + | sugar kinase Avi_6272 1265676 - 1266527 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 1202 1266535 - 1266576 + TF 77 -12.4 -2.71712 | gap 1, opp_overlap 1266537 1266574, overlap 1266528 1266534 CGCTTTAAGGTTTAA GACCTTTTTGGGCGGG-CT TTATC GGTCCTGCCCAAAAAGGCC CTTTGCGGGGGCGCA TERM 1203 1266574 - 1266537 - Tf 75 -11.4 -3.06261 | opp_overlap 1266528 1266535 1266534 CTTTAAGGTTTAAGA CCTTTTTGGGCGGG CTTTATCGGT CCTGCCCAAAAAGG CCCTTTGCGGGGGCG TERM 1204 1266702 - 1266718 + TF 90 -4.4 -5.44119 | gap 1, opp_overlap 1266694, overlap 1266694 GAACAGAGCCGGGAG CCGCGCT TTCC AGC-CGG TTTTTTTGCGCTACA TERM 1205 1266871 - 1266855 - gT 83 -10.1 -4.10161 | overlap 1266845 1266843 1266842 CAGGATCTTGGAAAA GATCGCC AGA GGCGACC CCTTGGCAGAGACCG TERM 1206 1267541 - 1267519 - gT 78 -11.2 -3.53012 | opp_overlap 1267519 GGTTTGCGCCTGAAA GCGATGACGG ATT CCGACACCGC TTTCAGGCTCGGTGG TERM 1207 1267519 - 1267541 + GT 73 -9 -3.57792 | opp_overlap 1267519 GGTTTGCGCCTGAAA GCGATGACGG ATT CCGACACCGC TTTCAGGCTCGGTGG TERM 1208 1268316 - 1268330 + GT 70 -10 -3.23447 | overlap 1268314 TTTTGGCACCGGTTT TGCGTC CTT GACGCA TCTTCTGACCGTTCC Avi_6274 1269418 - 1268642 - | hydantoin Racemase Avi_6273 1266820 - 1268709 + | GGDEF family protein Avi_6275 1270261 - 1269443 - | ABC transporter membrane spanning protein (spermidine/putrescine) Avi_6277 1271170 - 1270265 - | ABC transporter membrane spanning protein (spermidine/putrescine) TERM 1209 1270512 - 1270474 - G 85 -10.2 -4.31692 | AAGTGACGACGAAAA TTGTGCCGATAGCCATGC CGG GCTTGGCGAGCGGCAGAA TGACATTGGTGAGGA TERM 1210 1271202 - 1271233 + r 100 -13.8 -4.07868 | overlap 1271205 GTCTTCGGGGCTGCC ATATGTCTTCCCCG CGAA CGGGGAAGACATGG TTTCTATGGATATGA TERM 1211 1271205 - 1271230 + r 100 -17.7 -3.07132 | overlap 1271202 TTCGGGGCTGCCATA TGTCTTCCCCG CGAA CGGGGAAGACA TGGTTTCTATGGATA Avi_6278 1272538 - 1271249 - | ABC transporter substrate binding protein (spermidine/putrescine) TERM 1212 1272509 - 1272521 + g 73 -3.3 -4.81551 | opp_overlap 1272498, overlap 1272498 1272497 1272470 CGAACGGCGGGTCAC GCCGG ATT TTGGC TTTTTGGTATCAGTC Avi_6279 1273690 - 1272566 - | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) Avi_6280 1273920 - 1274630 + | transcriptional regulator GntR family Avi_6281 1274869 - 1275747 + | hypothetical protein TERM 1213 1276430 - 1276454 + G 93 -11.3 -4.60797 | opp_overlap 1276410 1276429 TGGATGTCATGCAAG CGCGGCGTGGC AAC GTGGCGCCGCG TTTTCTATGTGCAGG Avi_6283 1276132 - 1276680 + | DNA-3-methyladenine glycosylase attE 1276745 - 1277401 + | ABC transporter nucleotide binding/ATPase protein attG 1277401 - 1279809 + | ABC transporter membrane spanning protein TERM 1214 1280701 - 1280691 - g 72 -4.6 -4.64861 | overlap 1280692 CGGTGGTAAAACAAA CGCA GGT CGCG GGTCGCACCATGCCA Avi_6286 1279799 - 1280878 + | hypothetical protein TERM 1215 1281749 - 1281729 - g 73 -11.2 -3.33492 | opp_overlap 1281742 1281745 TGACCCATGTGACAA CCTCGATC CAGGC GATCGAGG CAGGCGCGCCGCTTG Avi_6287 1281038 - 1282435 + | ethanolamine ammonia-lyase large subunit Avi_6288 1282432 - 1283187 + | ethanolamine ammonia-lyase small subunit SEQUENCE gi|222147015|ref|NC_011989.1| Agrobacterium vitis S4 chromosome 1, complete genome (length 3726375) Avi_0001 203 - 1024 + | hypothetical protein maf 1056 - 1655 + | septum formation inhibitor protein aroE 1648 - 2508 + | shikimate 5-dehydrogenase TERM 1 3004 - 2993 - g 71 -7.2 -4.11216 | opp_overlap 2992 GCCGGATGCCGAAAA GCGC GCTC GCGC CGATTTTGTGATCGA coaE 2505 - 3092 + | dephospho-CoA kinase dnaQ 3187 - 3897 + | DNA polymerase III epsilon chain TERM 2 3938 - 3922 - T 100 -10.8 -5.60993 | opp_overlap 3922 CCTTCGATAAAAAAA GCCCGG ATCGA CCGGGC TTTTTTTTGCTGAGA TERM 3 3922 - 3938 + T 100 -10.8 -5.86061 | opp_overlap 3922 CCTTCGATAAAAAAA GCCCGG ATCGA CCGGGC TTTTTTTTGCTGAGA secB 4438 - 3977 - | protein-export protein SECB fxsA 5061 - 4528 - | hypothetical protein TERM 4 5308 - 5284 - g 70 -4.9 -4.41494 | overlap 5285 CACTGGCAATGAAAA GCCACCGAAAG ATC CTTTCGCCGGA CGCCCGGACGCTGCA Avi_0009 5183 - 5881 + | Membrane associated transporter protein mltA 5878 - 7023 + | membrane-bound lytic murein transglycosylase Avi_0011 7062 - 7601 + | DNA repair protein Avi_0012 7598 - 7993 + | transcriptional regulator gyrB 8119 - 10554 + | DNA gyrase subunit B TERM 5 10613 - 10576 - T 100 -14.3 -4.87592 | opp_overlap 10582, overlap 10577 10582 TCACAGATAACAAAA TTAAAAGGCCGTGCTTT GCAA AAAGCACGGCCTTTTTC GTGACTCACGTGAAA TERM 6 10612 - 10577 - T 100 -17.8 -3.5147 | opp_overlap 10582, overlap 10576 10582 CACAGATAACAAAAT TAAAAGGCCGTGCTTT GCAA AAAGCACGGCCTTTTT CGTGACTCACGTGAA TERM 7 10582 - 10607 + T 100 -17.7 -4.7497 | opp_overlap 10577 10576 10582 ATAACAAAATTAAAA GGCCGTGCTTT GCAA AAAGCACGGCC TTTTTCGTGACTCAC TERM 8 10607 - 10582 - T 100 -17.7 -4.79384 | opp_overlap 10582, overlap 10577 10576 ATAACAAAATTAAAA GGCCGTGCTTT GCAA AAAGCACGGCC TTTTTCGTGACTCAC Avi_0014 11311 - 10715 - | nitroreductase family protein TERM 9 10756 - 10741 - G 75 -5.4 -4.60041 | gap 1, opp_overlap 10741 ATTTACCCTCAAAAA CCAC-GG ATT CCAGTGG TTTGCGGTCATTGGG TERM 10 12590 - 12577 - g 78 -9.5 -3.9461 | TCTGGTGAAGAACAA CGGCG ATTC CGCCG AAAAGCACCGGGAAT depA 11732 - 13027 + | intracellular PHB depolymerase Avi_0017 13165 - 13611 + | hypothetical protein TERM 11 13657 - 13632 - f 90 -13.3 -3.55563 | opp_overlap 13633, overlap 13633 ATGTGATTTTGCAAA GGCCGAGATCC TTTT GGATCTCGGCT TTTTTTATGGCTCTC TERM 12 13656 - 13633 - f 100 -16.8 -2.73124 | opp_overlap 13633, overlap 13632 TGTGATTTTGCAAAG GCCGAGATCC TTTT GGATCTCGGC TTTTTTTATGGCTCT TERM 13 13633 - 13656 + F 100 -16.8 -5.65177 | opp_overlap 13632 13633 TGTGATTTTGCAAAG GCCGAGATCC TTTT GGATCTCGGC TTTTTTTATGGCTCT TERM 14 14123 - 14090 - g 71 -7.3 -4.23758 | opp_overlap 14114, overlap 14091 AGTGCAGATGGAAAA TGGCGAGCCGGTGAT CCGC ATCAGCGGCCTGCCG GAACACGCCGGTCGT Avi_0018 13722 - 14486 + | hypothetical protein TERM 15 14488 - 14507 + F 81 -10 -3.86283 | overlap 14506 TCGATTTTGACTGAT TTGGCTCG ACTC CGAGCCGA TTTCATGTCACTTCG trpF 14528 - 15202 + | N-(5prime-phosphoribosyl) anthranilate isomerase trpB 15199 - 16419 + | tryptophan synthase beta subunit trpA 16421 - 17260 + | tryptophan synthase alpha subunit TERM 16 17284 - 17324 + F 84 -11.2 -3.83378 | gap 1, opp_overlap 17293, overlap 17286 17290 AAATGGGCTATTGCC TT-GGAAGAAGCGGAGCCC GAGC GGGCTCCACCTCTTCCTGA TTGTCTGTTTTCAGC TERM 17 17286 - 17321 + F 100 -17.6 -2.98489 | opp_overlap 17293, overlap 17284 17290 ATGGGCTATTGCCTT GGAAGAAGCGGAGCCC GAGC GGGCTCCACCTCTTCC TGATTGTCTGTTTTC TERM 18 17290 - 17317 + F 76 -11.2 -3.32333 | opp_overlap 17293, overlap 17286 17284 GCTATTGCCTTGGAA GAAGCGGAGCCC GAGC GGGCTCCACCTC TTCCTGATTGTCTGT TERM 19 17314 - 17293 - f 100 -13.7 -3.61517 | opp_overlap 17290 17286 17284 ATTGCCTTGGAAGAA GCGGAGCCC GAGC GGGCTCCAC CTCTTCCTGATTGTC Avi_0022 17395 - 18315 + | acetyl-coenzyme A carboxyl transferase beta subunit TERM 20 18390 - 18364 - g 77 -12.2 -3.59262 | CCTGACATGCCTAAA GTCGGGAGCAGT TTT ACTGCACCCGGC CCTCAATACGAATTG TERM 21 19549 - 19513 - g 74 -11.6 -3.59979 | gap 1, opp_overlap 19501 CTTGGCTATTTCAAA GC-CTTTGAAGGCCTGG CCAT CCAGGCCTTCACCGTGC CAATCCGCGGCACCG folC 18355 - 19767 + | folylpolyglutamate synthase TERM 22 19960 - 19944 - f 76 -10.9 -3.40403 | opp_overlap 19926 19944 CGTTCGTCAGTACAA TCGATCC ACT GGATCGA TTGTTCGGCTGCGCC TERM 23 19944 - 19960 + F 81 -10.9 -3.65046 | opp_overlap 19944, overlap 19926 CGTTCGTCAGTACAA TCGATCC ACT GGATCGA TTGTTCGGCTGCGCC Avi_0025 20263 - 20913 + | hypothetical protein Avi_0027 21148 - 22152 + | hypothetical protein TERM 24 22350 - 22334 - T 100 -11.5 -5.63504 | overlap 22346 AACCCCACAAAAAAA GCCCGGC AAA ACCGGGC TCCCTCGCATCAGTA trxA 22699 - 22379 - | thioredoxin Avi_0030 23855 - 22899 - | hypothetical protein TERM 25 23922 - 23949 + r 81 -13.4 -2.64243 | GCCCTATTACGGCGA GCGGCCCTCCTT ATAG AGGGAGGGCCGG TGCTGTCGACTGTCG hslU 25336 - 24029 - | heat shock chaperone TERM 26 24787 - 24828 + g 88 -14.4 -3.48395 | opp_overlap 24775 24812 24813, overlap 24788 GAATGCCGACATTGG CCCCCGGCATGCCGGG AATCTCAAAG CCCGGCATGCCGGAGC TTGTCTCCGCAACCT TERM 27 24788 - 24827 + g 87 -17.9 -2.68823 | opp_overlap 24775 24812 24813, overlap 24787 AATGCCGACATTGGC CCCCGGCATGCCGGG AATCTCAAAG CCCGGCATGCCGGAG CTTGTCTCCGCAACC hslV 25934 - 25374 - | heat shock protein hslV TERM 28 26225 - 26238 + G 80 -4.5 -5.02476 | overlap 26226 26232 GGCACTTCGAAGATT TCGAC GGGG GTCGG TTTTTTCGACCATAT hisB 26129 - 26725 + | imidazoleglycerol-phosphate dehydratase TERM 29 27285 - 27300 + G 72 -6 -4.37886 | CCACGACCGACTATG GCGGCC CGAT GACCGC TTTTGTGGGACGTGA hisH 26753 - 27403 + | glutamine amidotransferase hisA 27428 - 28162 + | phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase hisF 28176 - 28970 + | imidazoleglycerol-phosphate synthase cyclase hisE 28983 - 29297 + | phosphoribosyl-ATP pyrophosphohydrolase panK 29303 - 30295 + | pantothenate kinase TERM 30 30407 - 30386 - g 82 -10.1 -4.18488 | gap 1, opp_overlap 30382 30386 30388 30388 ATTGATCCCAACAAA GCCGCGCCGG TTT CCGGCA-GGC GTGTGTTTCTTGGTG TERM 31 30537 - 30551 + G 78 -6.4 -4.66833 | opp_overlap 30537 TGCCCCGGACAGAAT TCGTCT ATG AGGCGA TTTTTACCCTTCAGG Avi_0040 30362 - 30940 + | hypothetical protein Avi_0041 31411 - 30977 - | Peptidyl 1-tRNA Hydrolase TERM 32 31537 - 31560 + r 100 -18.2 -3.56092 | opp_overlap 31537 TGCACCATAGAAAAA GCCCGGCGAT GATC ATCGCCGGGC TTTCCAAAATCGTCA TERM 33 31560 - 31537 - R 100 -18.2 -5.00895 | opp_overlap 31537 TGCACCATAGAAAAA GCCCGGCGAT GATC ATCGCCGGGC TTTCCAAAATCGTCA pckA 33198 - 31588 - | phosphoenolpyruvate carboxykinase TERM 34 32268 - 32278 + g 74 -8.2 -4.25104 | opp_overlap 32268 32267 AGCCATCGTTGAAAT CCGG AAC CCGG TTTTCATCCAGAACG TERM 35 33967 - 33951 - g 73 -12.3 -3.09492 | overlap 33931 CCGGCAATGTCAAGA CTGCTGC CGA GCAGCAG GCCCGCAACCTGGAG chvI 33554 - 34276 + | two component response regulator TERM 36 34295 - 34353 + F 95 -10.2 -4.68919 | overlap 34298 34303 CGCCTGCGGGCATTG CTTGCGGGTTGAGAGCCTGGCAGGTTCA GAT TGAACCAGGCATGCTCTCAATTCTCTTG TTTTCGTTTGTCTTT TERM 37 34298 - 34350 + F 100 -14.9 -4.40882 | overlap 34295 34303 CTGCGGGCATTGCTT GCGGGTTGAGAGCCTGGCAGGTTCA GAT TGAACCAGGCATGCTCTCAATTCTC TTGTTTTCGTTTGTC TERM 38 34303 - 34345 + F 100 -16.4 -3.97437 | overlap 34298 34295 GGCATTGCTTGCGGG TTGAGAGCCTGGCAGGTTCA GAT TGAACCAGGCATGCTCTCAA TTCTCTTGTTTTCGT TERM 39 34606 - 34616 + G 78 -8.2 -4.41548 | GATCAGACGCATCTT CGGC AAT GCCG TTTTCTCCAGTCTGA TERM 40 35260 - 35279 + G 74 -7 -4.34402 | overlap 35261 GCCGGTCCAGCGGTT CCGCGCCG TGCT CGGCGTGC TTTTGCTATCCACCC chvG 34514 - 36286 + | two-component sensor histidine kinase protein TERM 41 36405 - 36428 + G 71 -11.1 -3.21276 | opp_overlap 36403 36402, overlap 36403 CCTGCTGGAAAATGC GCGGCAAAA TGGCCT TTTTGCCGC TCTTGTGGCCGACGA Avi_0046 36283 - 36741 + | hypothetical protein Avi_0047 37102 - 37503 + | PTS system IIA component ptsH 37518 - 37793 + | phosphocarrier protein HPr ahcY 37838 - 39367 + | S-adenosylhomocysteine hydrolase TERM 42 39428 - 39393 - f 100 -17.8 -3.26387 | opp_overlap 39395, overlap 39395 39399 GATATACACAAGATA TAGAAATCGCAGCCTT GACA AAGGCTGCGATTTCTT TTTTTGTTTGCCCCT TERM 43 39426 - 39395 - f 100 -20.4 -3.18514 | opp_overlap 39395, overlap 39393 39399 TATACACAAGATATA GAAATCGCAGCCTT GACA AAGGCTGCGATTTC TTTTTTTGTTTGCCC TERM 44 39395 - 39426 + F 100 -20.4 -5.95539 | opp_overlap 39393 39395 39399 TATACACAAGATATA GAAATCGCAGCCTT GACA AAGGCTGCGATTTC TTTTTTTGTTTGCCC TERM 45 39422 - 39399 - f 100 -15.4 -4.22949 | opp_overlap 39395, overlap 39395 39393 CACAAGATATAGAAA TCGCAGCCTT GACA AAGGCTGCGA TTTCTTTTTTTGTTT TERM 46 39926 - 39959 + G 74 -7.3 -4.26903 | opp_overlap 39919 39922, overlap 39922 AGCGCAAACGATTGC CGTGCCGCAGCTG AATGCGGG CGGCATCGGCACG TTTTCATCCACTGAA TERM 47 40392 - 40405 + G 72 -9.5 -3.73775 | CGTGTTTCCGGGGGG CGGGC CTTT GCCCG TTTCGTGGCGCTCAA Avi_0050 39579 - 42314 + | two component sensor kinase Avi_0051 42311 - 43819 + | hypothetical protein Avi_0053 43973 - 44686 + | nucleotidyltransferase protein addB 44683 - 47871 + | double-strand break repair protein AddB TERM 48 48342 - 48356 + G 78 -9.2 -4.09685 | overlap 48340 CGGTGCTGGATGACC GCGCCG CCT CGGTGC TTTTGGCCGATGCCC TERM 49 50004 - 49979 - g 70 -3.9 -4.56597 | gap 1, overlap 49980 49981 GCTGGGTCGGAAAAA TGGCAGGCGGCC CTT GCCCGTCTGC-A CCGCTATGTGGCCTT TERM 50 51151 - 51133 - g 71 -11.6 -3.21276 | overlap 51131 51134 GCTTGGCGCAGAACA GCGCGCCG TCT CGGCGCGA GTGGACCGAATGGCG TERM 51 51150 - 51134 - g 81 -15.1 -2.52623 | overlap 51133 51131 CTTGGCGCAGAACAG CGCGCCG TCT CGGCGCG AGTGGACCGAATGGC uvrD 47864 - 51412 + | ATP-dependant DNA helicase TERM 52 52025 - 52043 + G 75 -5.9 -4.65895 | overlap 52030 GCGATATCGGCTATC TCCTGCC GGAAG GGCCGGA TTTTTCCGTGACGAC TERM 53 53543 - 53528 - g 78 -9 -4.16016 | GGACGCCGGAAGAAA TCCAGC GCGA GCTGGA TAACAATGCCCAGGG glcB 51760 - 53940 + | malate synthase G TERM 54 54080 - 54059 - T 100 -17.3 -5.64421 | opp_overlap 54059 ACGTGAAACAAAAAA GCCGCCGGA GCGA TCCGGCGGC TTTTTCATGGATGGT TERM 55 54059 - 54080 + T 100 -17.3 -4.75372 | opp_overlap 54059 ACGTGAAACAAAAAA GCCGCCGGA GCGA TCCGGCGGC TTTTTCATGGATGGT Avi_0061 54828 - 54130 - | hypothetical protein TERM 56 54697 - 54736 + g 73 -3.2 -4.80882 | opp_overlap 54717, overlap 54695 54721 GATCTGTGCTGTTTC GACCGAGGCTGGCGCGAC AACA GGCGCGGCCTCAGCGGTC TTTTTGCTGTCGGCT Avi_0062 54930 - 55490 + | hypothetical protein actR 56085 - 55510 - | two component response regulator TERM 57 56212 - 56154 - R 77 -6.1 -4.64657 | gap 2, overlap 56161 56162 56196 GGAAATGCGTAAAAA CGACGAAC--TAGAGCGTTGCTGCGATTC CAT GAAGAGCAGAAACGCTCTAACGTCCGCAG CGTTATTGCGCACTC TERM 58 56203 - 56161 - R 83 -12.8 -3.4158 | overlap 56154 56162 56196 CGTAAAAACGACGAA CTAGAGCGTTGCTGCGATTC CAT GAAGAGCAGAAACGCTCTAA CGTCCGCAGCGTTAT TERM 59 56202 - 56162 - R 84 -14.1 -2.64225 | overlap 56161 56154 56196 GTAAAAACGACGAAC TAGAGCGTTGCTGCGATTC CAT GAAGAGCAGAAACGCTCTA ACGTCCGCAGCGTTA actS 57548 - 56244 - | two component sensor kinase hrpB 60047 - 57585 - | DEAD box-like helicase TERM 60 57777 - 57801 + g 78 -6.4 -4.56597 | gap 1 CAGCAGCAGCGGCAA CCGTCC-GCCG CCAA TGGCCGGATGG TTTTTAAGGCCAAAC TERM 61 58562 - 58532 - G 78 -8.9 -4.20531 | gap 1, opp_overlap 58548 GATAGGCATGCAAAA GCAG-CACTCCGGC CAGC GCCGGGGTGGCAGC AGCCTGACGTTTCGG TERM 62 59328 - 59314 - G 77 -10 -3.90291 | AGCGGTGCAATCAAA GTTGCC GCT GGCAAC CGGCCCTCCAGCCGC TERM 63 59344 - 59359 + g 71 -10.4 -3.57144 | CGGCCCTCCAGCCGC TCCGCC ACGC GGCGGA TTTCGGCCTGACCGG TERM 64 59628 - 59587 - G 77 -11.8 -3.59583 | gap 3, overlap 59590 ACAATCAGCCGCAAA TCATCGCGC-AGCGC-GGATT GGC AATCCAGCGCCAGCGCGA-GA CCAAAATCCGCATCC TERM 65 59626 - 59590 - G 82 -14.6 -2.91873 | gap 2, overlap 59587 ATCAGCCGCAAATCA TCGCGC-AGCGC-GGATT GGC AATCCAGCGCCAGCGCGA GACCAAAATCCGCAT arcB 61086 - 60130 - | ornithine cyclodeaminase TERM 66 62301 - 62281 - R 74 -9.7 -3.5594 | opp_overlap 62280 62277, overlap 62272 AAGTCAGGGGTGAAA TCCCGCAGC TCA ACTGCGGAA CTGCCTTTGATACTG TERM 67 62678 - 62691 + r 82 -8.1 -4.54727 | overlap 62671 GACATCCTGTGACCG CCACG GAGA CGTGG TTTTCCTTTCGGGGA TERM 68 63235 - 63248 + r 72 -5.3 -4.57882 | GACTCCTTTTTAAGT GGTTT TGGC AAACC TTTCTTGTTCTTACG TERM 69 63983 - 64006 + r 76 -11 -3.29161 | opp_overlap 63981, overlap 63981 63984 64002 AGAAAAAATAAGGTT TGCACCGTTC TTAT GAACGGTGCC TGTTCTGGTACATTG TERM 70 63984 - 64005 + r 90 -14.5 -2.57014 | opp_overlap 63981, overlap 63983 63981 64002 GAAAAAATAAGGTTT GCACCGTTC TTAT GAACGGTGC CTGTTCTGGTACATT TERM 71 64180 - 64196 + r 70 -10.9 -2.81464 | overlap 64182 GGATCGTTCGTTGTT CATCGTC TTT GACGATG TCTGATGAATGATCA TERM 72 64780 - 64767 - R 80 -5.2 -4.88163 | TGAAGACAAAACAAA CCCC GAGTGT GGGG CGATAGGGTTCGGCA TERM 73 65960 - 65944 - R 81 -9.4 -4.08546 | ATGAGTAACGATAAA GGGGGT GAGAG ACCCCC TCGCCGAAAGACCAA TERM 74 66348 - 66335 - R 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 75 67439 - 67463 + r 81 -12.9 -2.54801 | overlap 67437 67436 67439 CGTTCTCATTGACCA TGCTCATCGAC TTC GTCGATGAGCC ATCTGTTTAGCGCTC TERM 76 67439 - 67464 + r 77 -11.3 -3.25204 | gap 1, overlap 67439 67437 67436 CGTTCTCATTGACCA TG-CTCATCGAC TTC GTCGATGAGCCA TCTGTTTAGCGCTCA TERM 77 67627 - 67615 - R 100 -10.5 -4.97957 | overlap 67617 CACACAATAAGAAAA CGGGC AAT GCCCG CCAGCTTCTCATCAA TERM 78 67836 - 67824 - R 71 -9.1 -3.51934 | overlap 67822 CTTCTCTCATAAACA TCGGC CCC GCCGA AAACATAAAGGGTCG TERM 79 67846 - 67863 + r 91 -12.7 -3.73068 | opp_overlap 67846 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 80 67863 - 67846 - R 100 -12.7 -4.45168 | opp_overlap 67846 CGCCGAAAACATAAA GGGTCGC TCAA GCGACCC TTATTCCGTTAACGA TERM 81 67999 - 68017 + r 93 -11.7 -4.26189 | opp_overlap 67991 67999 ATATCAATACGATAA GCCCTCC CAAAA GGAGGGC TTTTGGCGTTTCTGG TERM 82 68017 - 67999 - R 86 -12.4 -3.53933 | opp_overlap 67999, overlap 67991 ATATCAATACGATAA GCCCTCCC AAA AGGAGGGC TTTTGGCGTTTCTGG TERM 83 68345 - 68305 - R 86 -6.8 -4.93296 | overlap 68313 CCATGAGTAGAAAAA TCGCCAAATGACTTGGCG GTGGT CGCCAAGCCATCCAGAGT AGCAGTGTCAGGGGG TERM 84 68337 - 68313 - R 88 -12.2 -3.69455 | overlap 68305 AGAAAAATCGCCAAA TGACTTGGCG GTGGT CGCCAAGCCA TCCAGAGTAGCAGTG Avi_0070 69735 - 68353 - | MFS permease TERM 85 69711 - 69699 - G 71 -10.5 -3.61398 | opp_overlap 69688, overlap 69700 CTTGCGGGTCAACAA GCGGC GCC GCCGC CGTGATCCGTTGTTC TERM 86 69950 - 69986 + r 70 -6 -4.1822 | gap 1, opp_overlap 69959, overlap 69953 TGGAATGCCCCCGCC TGA-TACGAACGATCAT TGAA ATGACCGTTCGTATTCC TTTGTTGCCCTCAAG TERM 87 69953 - 69982 + r 88 -12.3 -3.6914 | opp_overlap 69959, overlap 69950 AATGCCCCCGCCTGA TACGAACGATCAT TGAA ATGACCGTTCGTA TTCCTTTGTTGCCCT dapA 71003 - 70056 - | dihydrodipicolinate synthase TERM 88 71058 - 71083 + H 70 -6.1 -4.22407 | opp_overlap 71057, overlap 71049 GACCGGCGATAGGAT CGTTAATGGGA ACGT TCCCACTATCG TTTCTGATTTTACTG Avi_0072 71167 - 72198 + | transcriptional regulator LacI family Avi_0073 73248 - 72244 - | hypothetical protein TERM 89 72696 - 72653 - G 71 -13.2 -2.5547 | gap 1, opp_overlap 72648, overlap 72652 ATTCCCGAGACCAAT GCCGCCGCATGCCCGCCAA TTGCGCG TTGGCGGGCATT-GGCGGT CTCACCGGTTCCATC TERM 90 73420 - 73458 + r 82 -11.8 -3.54129 | opp_overlap 73426, overlap 73428 ATTGGCAACATGCGT TGCAAATAGCCGGGTTTT GGA AAAACCCGGCTATTAACC TTTGGAGACAATCTC TERM 91 73452 - 73426 - R 100 -18.2 -3.54307 | opp_overlap 73420 73428 AACATGCGTTGCAAA TAGCCGGGTTTT GGA AAAACCCGGCTA TTAACCTTTGGAGAC TERM 92 73428 - 73450 + r 100 -16.4 -3.12668 | opp_overlap 73426, overlap 73420 CATGCGTTGCAAATA GCCGGGTTTT GGA AAAACCCGGC TATTAACCTTTGGAG idhA 74465 - 73476 - | myo-inositol 2-dehydrogenase TERM 93 73700 - 73710 + g 70 -4.6 -4.46212 | CGATCTCGATGGAGA CCGG GCG CTGG TTTTCTGCTGCGACA TERM 94 74002 - 73967 - G 71 -6.8 -4.10657 | gap 1, overlap 73968 TCATATCGCGGAAAA TGCCGCCG-GAGACTTT GAT ATAGTCTGGCGGCGGCG CACCGGGATCACGAC TERM 95 74435 - 74453 + g 74 -6.7 -4.44448 | gap 1 CTTTGCCGATACGGC CTGCGCCC AGAA GGGC-CAG TTTCTTTACCATCGT TERM 96 74887 - 74898 + G 80 -4.4 -4.97402 | CTTTATGCGATTTTG CCAA ATAT TTGG TTTTTCTGGATTTTC TERM 97 75209 - 75195 - g 83 -5.6 -5.00884 | opp_overlap 75195 ATGCCTTTGAAAAAA TGGCAG TTC CGGCCA TGTTACACAGTGGCG Avi_0075 74678 - 75511 + | transcriptional regulator RpiR family TERM 98 75989 - 75971 - g 71 -7.3 -4.11216 | TTTCTACCGCGAAAA CTGCGCC GACAT GGCGCTG TGCGAGGATGATATT TERM 99 76310 - 76275 - g 75 -9 -3.97307 | overlap 76301 GGCACGGAAGAAGAA TTCCACATTGCCGGTG GCAG CACCAACACGGTGGAA GCACTGCGGGCCGTG iolC 75639 - 77543 + | myo-inositol catabolism IolC protein TERM 100 77656 - 77608 - f 71 -2.3 -5.0065 | opp_overlap 77609, overlap 77603 77609 77610 GATGCATAAACAAAA GGCTAGTGCACTATAGCATGAAC GAA GTGAATGCGTCAGTGCACTAGGA TTTCAGGGAGAGAGA iolD 77675 - 79498 + | acetolactate synthase TERM 101 79759 - 79745 - g 76 -7 -4.43681 | CATTGAAGACGAAAA GGCGGC GAT GCAGCC TGCCCTCGATCTGTT TERM 102 80190 - 80168 - g 74 -7.6 -4.25104 | GGTGCGCGATGAAAA GCTCTCCTTC CTT GAAGGCGTGC GTCGTGGCGTTTTCA iolE 79500 - 80402 + | hypothetical protein Avi_0079 80511 - 80717 + | hypothetical protein iolB 80714 - 81532 + | hypothetical protein Avi_0081 82008 - 81529 - | hypothetical protein TERM 103 81701 - 81732 + g 87 -9.6 -4.56597 | opp_overlap 81701 TTATCTATTAGAAAA GACAATAGTGCT GCGTCATA AGCGCTATTGTC TTTTTGACACACAGC TERM 104 81732 - 81701 - G 76 -7.4 -4.4767 | opp_overlap 81701 TTATCTATTAGAAAA GACAATAGTGCT GCGTCATA AGCGCTATTGTC TTTTTGACACACAGC TERM 105 82027 - 82051 + r 72 -7.7 -3.90328 | opp_overlap 82027 CCACCTCAGATTACA GGGATTGCCCG ATC CTGGCTGTCCC TTTCTGGCCATTATC Avi_0082 82423 - 82022 - | hypothetical protein TERM 106 82667 - 82688 + G 72 -8.7 -3.83205 | gap 1 CCAGGATGTGGCGAC GCTGTCGCGC CGT GCG-GACGGC TTTGATCTGACGGAT TERM 107 82931 - 82919 - g 72 -4.8 -4.56597 | GCTTCTGGCGAAAAA CAGC CGGTC GCTG ATGGGTTTCCTGTCG TERM 108 83202 - 83216 + G 70 -4.2 -4.64766 | overlap 83197 GACACGCTCACTCCC GCCC AGACCGG GGGC TTTTTCGCCTATGAC csgA 82554 - 83252 + | C factor Avi_0084 83320 - 83874 + | hypothetical protein TERM 109 84288 - 84276 - g 71 -10.5 -3.53012 | opp_overlap 84276 GTGGCGCGCGGCAAA GGCCG GAT CGGCC TTGTCGGTTCGGTCT idnO 83874 - 84644 + | gluconate 5-dehydrogenase TERM 110 84673 - 84692 + T 86 -9.2 -4.41494 | opp_overlap 84675, overlap 84675 TGTCATAACGTGAAA AAGGGGGC CTTC GCCCCCTC TTTTGATTGAAGATC TERM 111 84690 - 84675 - T 100 -11.8 -4.6902 | opp_overlap 84673 84675 TCATAACGTGAAAAA GGGGGC CTTC GCCCCC TCTTTTGATTGAAGA TERM 112 84675 - 84690 + T 88 -11.8 -3.8125 | opp_overlap 84675, overlap 84673 TCATAACGTGAAAAA GGGGGC CTTC GCCCCC TCTTTTGATTGAAGA Avi_0086 85928 - 84714 - | cyclopropane-fatty-acyl-phospholipid synthase Avi_0087 86728 - 85925 - | hypothetical protein Avi_0088 88032 - 86725 - | amine oxidase flavin-containing TERM 113 86877 - 86867 - G 74 -6.8 -4.25848 | opp_overlap 86876 AAGCCGCTACCAAAA TGCG CAC CGCA GAACCACGTCCTGTT Avi_0089 88139 - 88897 + | RNA polymerase sigma subunit protein Avi_0090 88897 - 89589 + | anti sigma factor protein TERM 114 89764 - 89712 - g 71 -11.1 -3.28712 | opp_overlap 89712 89710 GCTGGGTTTTTACAA GTCCCGCATCGGTGATATGATGCGG GAT CAGCCCAATTTCACCGCTGCGGGCC TGTTCTATCTATTTT Avi_0091 89617 - 90018 + | hypothetical protein glpR 90102 - 90872 + | transcriptional regulator DeoR family TERM 115 91806 - 91828 + G 74 -13.5 -2.58861 | overlap 91805 TGAGACGGATTTCAC CCTGATCGG CACGA CCGATCAGG ATTATCAAGGTGATC glpD 90949 - 92499 + | glycerol-3-phosphate dehydrogenase Avi_0095 92657 - 93760 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_0096 93764 - 94858 + | ABC transporter nucleotide binding/ATPase protein (sugar) Avi_0097 94855 - 95742 + | ABC transporter membrane spanning protein (sugar) Avi_0098 95833 - 96558 + | ABC transporter membrane spanning protein (sugar) Avi_0099 96572 - 96853 + | hypothetical protein TERM 116 98190 - 98175 - g 75 -5.4 -4.65916 | opp_overlap 98175 TTGACGTGAAGAAAA GCCAGA CCGG TCTGAC TTTCATCCGTCAGTC Avi_0100 96896 - 98620 + | hypothetical protein TERM 117 98629 - 98670 + T 88 -12.3 -3.61398 | opp_overlap 98625 98627 98631 98634, overlap 98631 GAAGTAAGAAACATC AATGATCGATGCCGCGCAT CATG ATGCGCGGCATCGGAAATG TTCTTCACCGCAGCA TERM 118 98668 - 98631 - T 86 -12.7 -3.54984 | opp_overlap 98629 98631, overlap 98625 98627 98634 AGTAAGAAACATCAA TGATCGATGCCGCGCAT CATG ATGCGCGGCATCGGAAA TGTTCTTCACCGCAG TERM 119 98631 - 98668 + T 100 -14.9 -3.38812 | opp_overlap 98625 98631 98627 98634, overlap 98629 AGTAAGAAACATCAA TGATCGATGCCGCGCAT CATG ATGCGCGGCATCGGAAA TGTTCTTCACCGCAG TERM 120 98665 - 98634 - T 100 -18.8 -2.89094 | opp_overlap 98631 98629, overlap 98625 98631 98627 AAGAAACATCAATGA TCGATGCCGCGCAT CATG ATGCGCGGCATCGG AAATGTTCTTCACCG TERM 121 98698 - 98729 + T 100 -17.4 -3.04558 | opp_overlap 98703, overlap 98703 GCAAAATACGGTACA AAAAACGCCCGGCA ATGT TGCCGGGCGTTTTA TCTATATCATGCTTT TERM 122 98703 - 98724 + T 100 -17.3 -4.65446 | opp_overlap 98703, overlap 98698 ATACGGTACAAAAAA CGCCCGGCA ATGT TGCCGGGCG TTTTATCTATATCAT TERM 123 98724 - 98703 - T 100 -17.3 -5.26918 | opp_overlap 98703 98698 ATACGGTACAAAAAA CGCCCGGCA ATGT TGCCGGGCG TTTTATCTATATCAT cycM 99331 - 98774 - | cytochrome c TERM 124 99126 - 99094 - G 71 -7.6 -4.08767 | opp_overlap 99117 TGCATTTCTTGAAAA TGGCCTCGCCAGCC TTGAC GTCTGCCGATGCCA GCAGTTCCGCAATCG TERM 125 99965 - 99978 + G 70 -3.7 -4.64861 | opp_overlap 99965 99966, overlap 99950 99966 GCCGCTGTCGGACAA TCGCC TGCG GGCGC TTTATTTTACCCGCG kdsB 99408 - 100238 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase pheA 100306 - 101103 + | prephenate dehydratase TERM 126 101120 - 101138 + T 81 -12.4 -3.2614 | opp_overlap 101120 CATAGATTGGAACAA TGGCGGCG GGG TGCCGCCA TTGCTCTGCGCACTC TERM 127 101138 - 101120 - T 85 -11.7 -3.67558 | opp_overlap 101120 CATAGATTGGAACAA TGGCGGC GGGGT GCCGCCA TTGCTCTGCGCACTC TERM 128 101170 - 101188 + T 88 -8.8 -4.63527 | opp_overlap 101170 ATATGTCTGCGAATA GCCGATCT TGT AGAGCGGC TTTTTCGAATCATGC Avi_0107 103122 - 101152 - | beta-glucosidase protein TERM 129 101986 - 102004 + g 74 -8 -4.14392 | CGTATCGGGCCGGAT GATCGGCG TGT CGCCGGGC TTTTCGCCATTCAGG Avi_0108 104377 - 103412 - | mutT/nudix family protein TERM 130 103692 - 103703 + g 74 -7.2 -4.26079 | TCCTCATAGGTCTCG CGCC GCAC GGCG TTTTCGATGGTTTCC Avi_0109 104817 - 104374 - | hypothetical protein TERM 131 105922 - 105946 + G 71 -10 -3.60792 | gap 1 CTGTTTGGCCATATC GTGCT-CGGCG ATGT CGCCGCAGCGC TTTCGGAATTCAACA dnaX 105085 - 106980 + | DNA polymerase III subunits gamma and tau Avi_0111 107080 - 107403 + | hypothetical protein TERM 132 107451 - 107433 - T 85 -11.7 -3.60792 | opp_overlap 107433 TTCCGAATTCGTAAA GGCGAGG TCATT CCTCGCC TTTTTCCGTCTTGCC TERM 133 107433 - 107451 + T 100 -11.7 -4.74706 | opp_overlap 107433 TTCCGAATTCGTAAA GGCGAGG TCATT CCTCGCC TTTTTCCGTCTTGCC Avi_0112 107763 - 107440 - | hypothetical protein Avi_0113 107934 - 108122 + | hypothetical protein Avi_0114 108696 - 108172 - | acetyltransferase protein Avi_0115 109297 - 108713 - | transcriptional regulatory protein TERM 134 109520 - 109500 - H 72 -5.3 -4.51378 | ATTGAGATCAGAAAA CCGCAAATC GAG GAAATGCGG CCGAAGATTACCGTC ftsZ1 109515 - 110468 + | cell division protein lepA 110502 - 112379 + | GTP-binding protein LepA TERM 135 112441 - 112416 - T 100 -17.7 -4.31085 | opp_overlap 112416 TATATCAATGCAAAA GGCGGAAAACC GGGA GGTTTTCCGCC TTTTTTGTGAGAAAA TERM 136 112416 - 112441 + T 100 -17.7 -5.24129 | opp_overlap 112416 TATATCAATGCAAAA GGCGGAAAACC GGGA GGTTTTCCGCC TTTTTTGTGAGAAAA rnd 113091 - 112465 - | ribonuclease D Avi_0122 114716 - 113190 - | sulfatase protein TERM 137 114252 - 114277 + g 71 -8.2 -4.08216 | gap 1 CTGATGGAGTTCGCG CCCGG-GCCGC ACGCC GCCGCGCCGGG TTTTCAGCCAGCTCA Avi_0125 115156 - 114968 - | hypothetical protein TERM 138 115212 - 115244 + H 100 -13.5 -4.3208 | opp_overlap 115206 115214 GCCGATCAAGTTCAA GAGCCCGACGC ATCCTCCTCCC GCGTCGGGCTC TTTTGCGTTCTGGCC TERM 139 115242 - 115214 - H 72 -11 -3.10464 | opp_overlap 115212, overlap 115206 CGATCAAGTTCAAGA GCCCGACGCA TCCTCCTCC CGCGTCGGGC TCTTTTGCGTTCTGG noeK 115395 - 116840 + | phosphomannomutase TERM 140 117132 - 117142 + G 71 -8.2 -4.08394 | overlap 117131 GGGTCGCCTATTCCT G