TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.501477 %AT, 1005205 nt, 7024 terms. Intergenic: 0.506117 %AT, H2T: 170330 nt, 1195 terms; T2T: 58819 nt, 690 terms; H2H: 57280 nt, 681 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|222474741|ref|NC_012026.1| Anaplasma marginale str. Florida, complete genome (length 1202435) TERM 1 333 - 317 - g 70 -8.7 -3.60798 | opp_overlap 317 319 ATGTCCAGAAAGTAA CAGCACC CGT AGTGCTG TGTGTCATGGTGCTG AMF_1031 1 - 1905 + | hypothetical protein purE 2362 - 1862 - | phosphoribosylaminoimidazole carboxylase catalytic subunit (purE) TERM 2 1994 - 1979 - G 73 -11.8 -2.61144 | opp_overlap 1967, overlap 1978 1976 GGATGCCGCAAACAC GGCGGC ATTT GCCGCC CCCGCTACTCCGATA AMF_002 2957 - 2355 - | hypothetical protein rodA 3110 - 4183 + | Rod shape determining protein (rodA) ihfA 4258 - 4554 + | presumptive integration host factor alpha-subunit (ihfA) AMF_007 4551 - 4925 + | hypothetical protein AMF_008 6122 - 5187 - | hypothetical protein AMF_009 6622 - 6212 - | hypothetical protein murC 6924 - 8372 + | UDP-N-acetylmuramate-alanine ligase (murC) trpS 9388 - 8399 - | tryptophanyl-tRNA synthetase (trpS) TERM 3 9103 - 9085 - G 79 -12.4 -3.25223 | GAGTCATACGATTAA GCCACCCC ATG GGGGTGAC ACATCCGAGTATCCA grpE 10020 - 9385 - | GrpE protein (grpE) ribD 10101 - 11216 + | riboflavin biosynthesis protein (ribD) pyrG 13168 - 11486 - | CTP synthase (pyrG) secG 13510 - 13181 - | Preprotein translocase SecG subunit AMF_017 13685 - 13945 + | hypothetical protein TERM 4 14443 - 14433 - g 71 -6.8 -4.19953 | overlap 14425 GAGTCAATGCTAAAA GAGC AGC GCTC AGATGTGGGACATTT xerD 13938 - 14876 + | Tyrosine recombinase (xerD) phnL 15748 - 15074 - | ATP transporter ATP-binding protein (phnL) maeB 16019 - 18271 + | Malate dehydrogenase and phosphate acetyltransferase (maeB) TERM 5 18306 - 18343 + F 73 -12 -2.66711 | overlap 18305 GGGCTAAACTGCATG GCTCTACGCGCTGTCA TGGCCC TGGTGGCGCGTGGGGC ATTATGCGTTCTGGC AMF_021 18445 - 21165 + | hypothetical protein TERM 6 21297 - 21307 + F 86 -8.2 -4.61633 | AGGTTGTAATTATCG CCGC CAT GCGG TTTTTCAAAGTATGT nuoN 21385 - 22899 + | NADH dehydrogenase I chain N (nuoN) AMF_1032 23360 - 22914 - | hypothetical protein TERM 7 23027 - 23040 + g 70 -9.5 -3.2396 | opp_overlap 23025 23026 TATATGGCGAAAACT GCCGC TGAG GCGGC TTAGTACTACTGGTT AMF_023 23887 - 23495 - | ORF X AMF_024 24187 - 23954 - | ORF Y AMF_026 27444 - 25003 - | hypothetical protein TERM 8 27836 - 27809 - g 73 -5.6 -4.67353 | GTATGCACTCAAAAA TGGGGATGCTAT AGAC ATAGTATACCCA ATGCAAGGTGGTTAG thiS 27642 - 27851 + | Conserved hypothetical protein called by Glimmer 2 thiG 27914 - 28708 + | thiazole biosynthesis protein (thiG) AMF_029 29246 - 28806 - | hypothetical protein gltX 29426 - 30751 + | glutamate tRNA ligase (gltX) TERM 9 31887 - 31876 - g 71 -5.8 -4.32436 | overlap 31881 ATATCACTAGTAAAA GCCA AGGT TGGC CAAGTGATTGGCCCA AMF_031 31183 - 32388 + | hypothetical protein TERM 10 32897 - 32936 + G 70 -10 -3.19602 | gap 1, overlap 32894 32900 ATTCCTGAGCGCTAT GAGCTACTGACCCGCAAGT CTT ACT-GCGGGTCGGAAGTAC TATTCCTGTGCGCGC TERM 11 32900 - 32933 + G 77 -12.5 -2.79321 | gap 1, overlap 32897 32894 CCTGAGCGCTATGAG CTACTGACCCGCAAGT CTT ACT-GCGGGTCGGAAG TACTATTCCTGTGCG AMF_032 32408 - 32965 + | hypothetical protein AMF_033 33589 - 33206 - | ORF X TERM 12 34916 - 34892 - R 76 -2.8 -5.14477 | overlap 34895 GAGAGACGGAAAAAA CTAGCAGC AATGACGGA GCTGCAAG TACTCAAGAGCAAAC proP1 37835 - 36498 - | proline/betaine transport protein (proP1) rpsP 38075 - 38344 + | 30S ribosomal protein S16 (rpsP) glmU 39783 - 38497 - | UDP-N-acetylglucosamine pyrophosphorylase (glmU) TERM 13 38876 - 38892 + g 74 -2.2 -5.21709 | gap 1, overlap 38876 CTAACCCTGGCAAAT GG-GCCG ACAA TGGCTCC TTTTTTGATGTGGCA TERM 14 39810 - 39835 + r 70 -3.3 -4.86033 | overlap 39804 39811 ATACGTGGACTTGGG ACTCCAGGATT CATC AATTTTGGAGC TTTTTCTAGGGATTT ptr1 40722 - 39964 - | putative pteridine reductase 1 pheS 41868 - 40813 - | phenylalanyl tRNA synthetase alpha subunit (pheS) rplT 42217 - 41831 - | cyanelle 50S ribosomal protein L20 (rplT) TERM 15 42104 - 42128 + gr 73 -6.3 -4.56775 | overlap 42106 CAAAGCCTTCTCCAG CCGCTGCAGCG CAG CTCTGTAGCAG TTTTTAGAGCGCCCT rpmI 42444 - 42244 - | ribosomal protein L35 (rpmI) AMF_044 42863 - 43480 + | hypothetical protein TERM 16 44768 - 44742 - g 71 -5.8 -4.39166 | opp_overlap 44742 TCCTAGACAGGAAAA TCGCAGACAAGA GAA TCTACCCTGCGA TTGATATTTCTAAAT rho 43589 - 44953 + | transcription termination factor rho (rho) AMF_048 47870 - 48103 + | ORF Y AMF_049 48170 - 48556 + | ORF X fpbA 49098 - 50168 + | iron binding protein FbpA precursor (fpbA) AMF_1034 50196 - 50348 + | hypothetical protein AMF_051 54626 - 50598 - | hypothetical protein TERM 17 52741 - 52755 + g 71 -5.6 -4.58395 | GCCTCGCTATCACTC GGCAGC TCA GCTACC TTTTTGCCCCCTGGC TERM 18 53001 - 53014 + g 74 -2.3 -5.06816 | opp_overlap 53001 AACATATTCTGAATA TGCCG CCCC CAGCA TTTTTGTTCGCACAT TERM 19 53462 - 53499 + g 71 -7.7 -4.11216 | gap 1, opp_overlap 53474, overlap 53465 GTACTCCAATGTGCC CAACCGGGGAAAGGGTTG TTA CAATCCCT-CCTCGGCTG TTTTCAAGGTGCGCA AMF_052 54852 - 61187 + | hypothetical protein AMF_053 61812 - 61357 - | hypothetical protein AMF_054 61926 - 62237 + | hypothetical protein AMF_055 62336 - 62800 + | Conserved family protein omp14 62987 - 64183 + | outer membrane protein 14 AMF_057 65162 - 64755 - | ORF X AMF_059 67531 - 67908 + | ORF X recA 68311 - 69390 + | recA protein (recA) pyrE 69485 - 70087 + | orotate phosphoribosyltransferase (pyrE) thiF 70121 - 70927 + | thiamine biosynthesis protein (thiF) TERM 20 71268 - 71235 - T 79 -12.7 -3.11999 | gap 1, overlap 71267 ACCAAAGTGACGCAA CATGTGGCAAAGA-CT TTT AGATCTTTACCACATG TGAAAAGCCCACAAT msp4 72131 - 71283 - | major surface protein 4 (msp4) TERM 21 72580 - 72562 - R 83 -9.6 -4.17023 | TCAAGGACCTGAAAA TCATCGGC GAA ACCGATGA GGATGAAATGGATGT AMF_066 75727 - 74789 - | hypothetical protein TERM 22 75407 - 75395 - G 83 -5.5 -5.15969 | opp_overlap 75398 75400 TGGCAAGCCAAAAAA CCCCA TGC TGGAG CTTCCGGAACTGAAG AMF_067 76132 - 75812 - | hypothetical protein xseB 76182 - 76385 + | exodeoxyribonuclease VII, small subunit TERM 23 76793 - 76782 - T 72 -3.6 -4.87665 | GCCGAGTGAGAAAAA GCGC CAAC ACGC AGCCCCCCAAAAGGA trxA 77163 - 76816 - | thioredoxin (trxA) trbG 77984 - 77172 - | conjugal transfer protein trbG precursor (trbG) pdhA 79353 - 78235 - | pyruvate dehydrogenase E1 component, alpha subunit precursor (pdhA) TERM 24 78904 - 78875 - GR 73 -3 -5.00616 | gap 1 TGCCCGCCGAAAAAA TTCTTTGCTACAT TAAAC ATGT-GCATAGAA CCACCCTTACCCTTG AMF_072 80266 - 79325 - | hypothetical protein TERM 25 82615 - 82642 + r 74 -7 -4.34263 | gap 1 CCCGGGCGCCAGCCT GGGTGGAGTCGTC CTT GA-GATACCACCC TTTGTGTTCTTGGCA guaB 85403 - 83922 - | inosine monophosphate dehydrogenase (guaB) AMF_074 86282 - 85461 - | Conserved family ATP-NAD kinase called by Glimmer 2 rpmE 86578 - 86279 - | 50S ribosomal protein L31 (LSU/L31) (rpmE) fabD 86802 - 87821 + | malonyl CoA-acyl carrier protein transacylase (fabD) tmk 87823 - 88458 + | thymidylate kinase (tmk) TERM 26 88938 - 88922 - g 73 -5.2 -4.64657 | TTAAAGTTTCAAAAA TGTACT TTACT AGTACA AGATTTGCCAGGATG AMF_079 88513 - 89781 + | hypothetical protein AMF_080 90596 - 89937 - | hypothetical protein TERM 27 90435 - 90415 - G 77 -9.7 -3.7511 | opp_overlap 90415 TCCGCCACAACAGAA CTCACAGGA ATG TCCTGGGAG TTAATGGAGCCGTCA secB 90672 - 91199 + | protein export chaperone (secB) AMF_083 91153 - 91971 + | hypothetical protein mpp 93536 - 92226 - | Mpp AMF_085 93583 - 94905 + | hypothetical protein AMF_086 95211 - 96614 + | hypothetical protein ribE 97328 - 96711 - | riboflavin synthase alpha chain (ribE) msp1B-2 99775 - 97610 - | major surface protein 1B-2 AMF_090 101202 - 100006 - | major surface protein 1B mfd 104638 - 101180 - | transcription repair coupling factor (mfd) TERM 28 102272 - 102287 + g 80 -3.2 -5.24129 | overlap 102274 CCCCATGGGTGGGGT CCTGAG AACG CTCAAG TTTTTTATCCCGGAA TERM 29 103456 - 103440 - G 77 -10.1 -3.68988 | GCGGAGTTAATATAA TCCGCGG CCA CCGCGAA TACGTCAGCCTTTTG rnhA 104694 - 105209 + | ribonuclease H (rnhA) TERM 30 107629 - 107612 - g 95 -11.3 -4.57353 | GGTGAGCACAGAAAA CGCAGGA AACT TCCTGCG ATCCATCGACGTTTT AMF_093 105219 - 108218 + | hypothetical protein pyrH 108261 - 109142 + | uridylate kinase (pyrH) rrf 109151 - 109702 + | ribosome recycling factor (rrf) uppS 109703 - 110413 + | undecaprenyl diphosphate synthase (uppS) cdsA 110367 - 111251 + | phosphatidate cytidylyltransferase (cdsA) AMF_098 113251 - 111353 - | major surface protein 1B AMF_099 116322 - 113395 - | hypothetical protein TERM 31 115246 - 115266 + g 72 -4 -4.8543 | opp_overlap 115234, overlap 115234 AACCCCGCGCAACAG TGGGACAA TCTCC TTGTGCCA TTTTTGTGCGGCTTC TERM 32 116407 - 116380 - R 73 -5.1 -4.72272 | GTGTTCTATTAAAAA GTCAATAAATA TTAACT TATTTATTAAC GTACACGAGAAGTGC purC 117194 - 116466 - | phosphoribosoylaminoimidazole-succinocarboxamide synthase (purC) hisS 117312 - 118604 + | histidyl tRNA synthetase (hisS) dsbA 119369 - 118614 - | disulfide oxidoreductase TERM 33 118959 - 118933 - G 71 -6.4 -4.36914 | opp_overlap 118945 TCCGGGTTGATAAAA TGCACCGCAAGC GCT GCACGCGCCGCA AGCGTGGAAGCTTCT TERM 34 120165 - 120200 + G 71 -5.2 -4.58085 | overlap 120167 AAGTGGGCTTGTTGA TACCCCGCGTGTCAGT CACT ACAGGCTAGCGGGGCA TTTGTTTCTCACTAT TERM 35 120473 - 120483 + G 76 -6.8 -4.57073 | TTCTGCACGATGTTA CTGC AGT GCAG TTTTTGCACAGACTA coxW 119728 - 120753 + | cytochrome C oxidase assembly protein (coxW) panB 120788 - 121621 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) ccmA 122407 - 121763 - | heme exporter protein (ccmA) murA 123708 - 122422 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murA) dcd 124267 - 123710 - | deoxycytidine triphosphate deaminase (dcd) AMF_108 125211 - 124366 - | hypothetical protein cspA 125595 - 125873 + | cold shock protein (cspA) ntrY 125915 - 128002 + | nitrogen regulation protein (ntrY) rnd 127971 - 129131 + | ribonuclease D (rnd) ligA 131283 - 129262 - | DNA ligase (ligA) grxC2 131624 - 131292 - | glutaredoxin-like protein GRLA (grxC2) AMF_114 131850 - 131614 - | hypothetical protein dsbE 132482 - 131994 - | Thiol:disulfide interchange protein (dsbE) TERM 36 132219 - 132236 + g 72 -4.1 -4.89009 | overlap 132220 GTCAAGATATGCCAC GCCATAC ACAC GTATGGG TTTTTCATTGGCTAT TERM 37 132249 - 132262 + g 71 -5.3 -4.4891 | GGGTTTTTCATTGGC TATGG ACAT CCATA TTTTGTGCTCCTCAA radA 133861 - 132491 - | DNA repair protein (radA) TERM 38 133052 - 133012 - G 80 -2.6 -5.40474 | overlap 133015 ACTGGCCCAAAAAAA GCATGGAT-GGATCTTGCAC AGG GAGCA-GACCCGATCCAGAC ATTTCAAAAACTCCC TERM 39 135173 - 135159 - g 76 -2.7 -5.1675 | opp_overlap 135171 CCACTGAGGAAAAAA CCGGC CATCC GTCGG GGAGCAGGCTGCTAT AMF_117 134108 - 136750 + | hypothetical protein AMF_118 136757 - 137344 + | hypothetical protein rpsF 137355 - 137738 + | 30S ribosomal protein S6 (rpsF) rpsR 137739 - 138041 + | small subunit ribosomal protein S18 (rpsR) rplI 138061 - 138723 + | ribosomal protein L9 (rplI) TERM 40 138997 - 139008 + G 70 -4.4 -4.71061 | ACCTAGCCGTTGAGC GTCT CTGC AGAC TTTTTGGGTGTAAAT glyA 138750 - 140042 + | glycine/serine hydroxymethyltransferase (glyA) cyaY 140173 - 140514 + | putative CyaY protein msbA2 140495 - 142243 + | ABC efflux transporter (msbA2) sdhA 142514 - 144313 + | succinate dehydrogenase flavoprotein subunit (sdhA/frdA) sdhB 144338 - 145126 + | succinate dehydrogenase iron-sulfur protein (sdhB/frdB) TERM 41 145649 - 145624 - g 79 -13.3 -2.77999 | overlap 145628 CATGTATGAAGATTA CGAAGCCCTGC TGGA GCAGGGCTTAG CGCGGGAGCTTGCCA TERM 42 145645 - 145628 - g 81 -12.7 -3.28637 | overlap 145624 TATGAAGATTACGAA GCCCTGC TGGA GCAGGGC TTAGCGCGGGAGCTT thy1 145127 - 146002 + | THY1 protein bcr2 146138 - 147319 + | bicyclomycin resistance protein (bcr2) ruvB 148456 - 147461 - | Holliday junction DNA helicase (ruvB) ruvA 149025 - 148453 - | Holliday junction DNA helicase (ruvA) ccmC 149774 - 149022 - | Cytochrome c-type biogenesis protein (ccmC) TERM 43 149473 - 149458 - G 71 -6.8 -4.16279 | CACACCATGGTAAAA CACCCG CCCA CAGGTG CCATCGCCCTGGACA TERM 44 150224 - 150234 + G 73 -5.4 -4.72272 | AGGGTGAGGTTAACG GTAG GGA CTAC TTTTTCCTCAGCGAA TERM 45 150241 - 150255 + G 76 -5.6 -4.79223 | AGGGACTACTTTTTC CTCAGC GAA GCGGAG TTTTTGCTGATGTGC gmk 149959 - 150693 + | guanylate kinase (gmk) AMF_133 150819 - 151931 + | hypothetical protein folD 152081 - 152980 + | methylenetetrahydrofolate dehydrogenase (folD) msp1B-1 153451 - 155721 + | major surface protein 1B-1 TERM 46 156128 - 156118 - f 74 -8.2 -4.08216 | TCACTTGGGTGAAAA GCCG TAC CGGC GGGGCTGCAGCTTAG AMF_136 156205 - 158601 + | hypothetical protein AMF_139 159089 - 158640 - | major surface protein 1B AMF_141 160163 - 159372 - | hypothetical protein cycM 160785 - 160246 - | cytochrome C (cycM) TERM 47 161023 - 161039 + r 90 -13.7 -3.76402 | opp_overlap 161016 161015 ATGACAACGCCGTTC TGGGCCG GCT CGGCCCA TTTACTGCATGAGAT nuoL2 162708 - 161185 - | NADH dehydrogenase I chain L (nuoL2) TERM 48 161497 - 161473 - G 71 -7.2 -4.08692 | gap 1 GAACTTTCCCCAAAA GGTTGAGGCTG GCGG CA-CCCCAACC ATCGCCAAAGCCCCG ppdK 165729 - 163075 - | pyruvate, phosphate dikinase precursor (ppdK) TERM 49 163736 - 163747 + g 78 -5.8 -4.83169 | CTGCAACCTCTGTGA CCCA GCAT TGGG TTTTTCTCAGACAAT AMF_146 166534 - 166025 - | hypothetical protein AMF_147 167166 - 166537 - | hypothetical protein aspS 169130 - 167352 - | aspartyl-tRNA synthetase (aspS) TERM 50 168127 - 168109 - G 91 -5.2 -5.52384 | opp_overlap 168117 TTGTCATCAAAAAAA CTCCTCGG CTT CCCAGAAG TGTTGGGAGCAGGAA AMF_149 169549 - 170136 + | hypothetical protein TERM 51 170314 - 170329 + G 74 -6.8 -4.32607 | CTGAGGCGTTTTCTG TCCGCG TGGG TGCGGA TTTGTTACATTTTCA gshB 170151 - 171077 + | glutathione synthase (gshB) ddlB 171213 - 172217 + | D-alanine--D-alanine ligase (ddlB) TERM 52 172722 - 172742 + G 76 -7.5 -4.37092 | overlap 172726 GTCAATTTATGGCGA TGAGGCCCT GGA AGGGCTACA TTTTGTGCGCGAAGT ftsQ 172198 - 172983 + | cell division protein (ftsQ) ntrX 173224 - 174624 + | nitrogen assimilation regulatory protein (ntrX) AMF_154 175005 - 175397 + | ORF X pdhD 177844 - 176411 - | Dihydrolipoamide dehydrogenase (pdhD) TERM 53 177341 - 177354 + g 74 -2.3 -5.14563 | overlap 177337 177342 TAGCATTGCGTCTCT GGCTG TCCA CAGCA TTTTTTCGTCCAAGC AMF_157 178022 - 180550 + | hypothetical protein TERM 54 180575 - 180615 + F 74 -4 -4.98522 | opp_overlap 180580, overlap 180580 180583 ACGTTTTTTAGCCTA CACTA-CCGGCCGGGCAGGT CTA ATCTGC-CGGCTGCTTAGAG TTTTTGTGTCCGGTT AMF_158 180619 - 182085 + | hypothetical protein TERM 55 182276 - 182288 + G 70 -4.8 -4.60797 | CGAACATGAGACTCA GCTG AACAA CAGC TTTTCTGTCTGGCGG AMF_159 182085 - 182708 + | hypothetical protein AMF_160 182705 - 183241 + | hypothetical protein TERM 56 184236 - 184221 - g 91 -6.8 -5.10933 | opp_overlap 184227 TTACGTAAAAGAAAA GCTCCC GGGC GGGAAC GTCCTTGTTGCCTAT phnP 183334 - 184275 + | PhnP protein glnA 185097 - 184270 - | glutamine synthetase (glnA) TERM 57 184810 - 184829 + g 80 -2 -5.40072 | opp_overlap 184797, overlap 184811 184812 ATTGCCGCCAAAAGA TTCGGCAG TGCG CTGCAGGG TTTTTTTCACGGAAA pstC 186202 - 185075 - | ABC-type phosphate transport system, permease component (pstC) TERM 58 185967 - 185951 - G 85 -7.3 -4.86033 | overlap 185953 AAAGGTGGATAAAAA CATTGCG CAC CGCAATA TGGCAAACTTTTTAT TERM 59 185965 - 185953 - G 71 -7.7 -4.04397 | overlap 185951 AGGTGGATAAAAACA TTGCG CAC CGCAA TATGGCAAACTTTTT TERM 60 187432 - 187422 - g 79 -5.4 -4.98911 | TACTAGAAAAAGAAA TAGG TGG CCTA CTGCCGGGTCAGGTG TERM 61 188728 - 188750 + G 77 -9.8 -3.68936 | overlap 188731 TGCGATAGCTACAGC TGTGGACGGC AAG GCTGTCCTCA TTATTGGAGTTGGTG alaS 186287 - 188935 + | alanyl-tRNA synthetase (alaS) sucD 190526 - 189642 - | succinyl-CoA ligase chain A (sucD) sucC 191734 - 190535 - | succinyl-CoA synthetase beta chain (sucC) rpsU 192082 - 191804 - | 30s ribosomal protein s21 (rpsU) pstS 193191 - 192175 - | phosphate ABC transporter, periplasmic phosphate-binding protein msp5 193883 - 193251 - | major surface protein 5 (MSP5) TERM 62 194058 - 194038 - R 91 -7.5 -5.10029 | AGTAACCCGAAAAAA GCGTGTAGC CAC ACAACACGC AGTGAGGCTAACGGT fabK 195082 - 194066 - | enoyl-(acyl-carrier-protein) reductase II cybB 195702 - 195085 - | cytochrome b561 (cybB/yceJ) TERM 63 196126 - 196148 + G 82 -12.8 -3.41581 | opp_overlap 196138, overlap 196138 GTCGGAGCCGTGGTG GCGCTCATAG GAG TTATGAGCGC TTGGTTCATAACTTA fbpB 195940 - 197568 + | Iron(III)-transport system permease protein (fbpB) aprE 199301 - 197763 - | alkaline protease secretion protein (aprE) AMF_176 200045 - 199389 - | hypothetical protein TERM 64 199421 - 199446 + g 74 -2.5 -5.1925 | gap 1, opp_overlap 199421 CAAAAACCTTCAACA CTCTCGGCAGCA TGT TTCTGGCG-GAG TTTTTTAACTTCTGC murD 200462 - 201826 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) tolB 203176 - 201851 - | TOLB protein precursor (tolB) AMF_179 204862 - 203183 - | hypothetical protein TERM 65 203951 - 203969 + g 73 -8.8 -3.69216 | overlap 203949 GTACAGCACGTTTTT GGCTGGTA TAC TCCCAGCC TGTTTTGCATCGAGA TERM 66 204149 - 204130 - G 76 -6.4 -4.66609 | gap 1, opp_overlap 204130 TATTCGAGGCAAAAA GCGCAACGG CCA CC-CTGCGC TTGCTCGCTTTCACT TERM 67 204455 - 204426 - G 73 -5.7 -4.56093 | gap 1 AACTCAAGCACAAAA GGCCCCAGC-TCCA ACT TAGATGCTGGATCC ACCTCTTCAATTGGG AMF_180 205053 - 205625 + | hypothetical protein AMF_181 205658 - 207151 + | hypothetical protein rpsL 207336 - 207710 + | 30S ribosomal protein S12 (rpsL) rpsG 207728 - 208210 + | 30S ribosomal protein S7 (rpsG) TERM 68 208933 - 208949 + G 71 -6.5 -4.24397 | opp_overlap 208931 AGCCATGAATCTATA TCTCGAC GGT GGCGAGA TTTCTGTTCCGTTGT TERM 69 209047 - 209073 + G 91 -6.5 -5.07567 | overlap 209043 CAAGAATAAGGGTGT TCAGCCGCTGC TGGAC GCTGTGGTTGA TTTTTTACCATCTCC fusA 208244 - 210316 + | elongation factor G (fusA) tuf 210328 - 211509 + | translation elongation factor Tu (tuf) AMF_187 211609 - 211821 + | Conserved family - SecE subunit nusG 211805 - 212371 + | transcription antitermination protein (NusG) rplK 212375 - 212818 + | 50S ribosomal protein L11 (rplK) rplA 212837 - 213490 + | ribosomal protein L1 (rplA) rplJ 213514 - 214017 + | ribosomal protein L10 (rplJ) rplL 214142 - 214546 + | ribosomal protein L7/L12 (rplL) TERM 70 216141 - 216172 + G 70 -4.4 -4.63527 | overlap 216142 CCTGTGATTTCGTCA ATCCTAAGGTGCTG GCTA CAGTACTTAAGGAC TTTTTCAGCTCATCG rpoB 214571 - 218731 + | RNA polymerase beta subunit (rpoB) TERM 71 219732 - 219720 - g 70 -3.3 -4.83615 | CATGGGCTACAAAAA GTCTC TTA GTGAC ATGCTTAAGGGAAAG rpoC 218743 - 222990 + | DNA-directed RNA polymerase beta' chain (rpoC) rnhB 224006 - 222987 - | ribonuclease HII (rnhB) AMF_197 224223 - 227486 + | hypothetical protein AMF_1035 228280 - 227837 - | hypothetical protein bioF 229729 - 228587 - | 8-amino-7-oxononanoate synthase TERM 72 229818 - 229836 + H 80 -11.7 -3.41051 | opp_overlap 229810 229813 ACCAAACCCACCCAT GCACCGC AATGC GCGGTGC TTATGCTACCAGTAC AMF_200 230142 - 230663 + | Conserved family - Na+/H+ antiporter TERM 73 230742 - 230763 + T 74 -2.2 -5.19261 | gap 1, overlap 230741 CACAAACATGACAGG CGCGGCGGC CCTCA GCC-TTGCG TTTTTTCGTAAATTT AMF_201 231526 - 230753 - | hypothetical protein pyrD 232702 - 231533 - | dihydroorotate dehydrogenase (pyrD) def 232863 - 233453 + | Peptide deformylase AMF_205 233585 - 234337 + | hypothetical protein AMF_206 234641 - 235567 + | hypothetical protein TERM 74 235844 - 235830 - g 77 -9.2 -4.11216 | TTGCGATGTTCAAAA CAGGCC ATC GGCCCG GGTCGTACTGCTCAA pdxH 235648 - 236304 + | pyridoxamine 5-phosphate oxidase (pdxH) murE 237727 - 236309 - | UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) AMF_209 237711 - 237926 + | hypothetical protein metC 239174 - 237948 - | cystathionine beta-lyase bolA 239601 - 239128 - | bolA like protein (bolA) AMF_212 239738 - 240673 + | hypothetical protein TERM 75 241665 - 241677 + G 84 -4.8 -5.28176 | TATTCCCCTGGTTGC CACG AACGA CGTG TTTTTTGTACGTAGG TERM 76 244250 - 244232 - g 80 -4.6 -5.1101 | CCATGACTCAAAAAA TGAAAAAC ATA GTTATTCA CTTCAGTCAAGGTCA dnaE 241084 - 244467 + | DNA polymerase III, alpha subunit (dnaE) aroA 244707 - 246095 + | 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) TERM 77 246363 - 246390 + F 79 -12.8 -3.14132 | opp_overlap 246363 TGCAAGTCGAACGGA CCGTATACGCAG CTTG CTGCGTGTATGG TTAGTGGCAGACGGG TERM 78 246881 - 246865 - f 72 -10.1 -3.43919 | overlap 246863 GTTAAAGGTGAAATA CCAGGGC TTA ACCCTGG GGCTGCTTTTAATAC TERM 79 247966 - 247976 + G 70 -4.6 -4.64361 | CTCTATCACTCATAG GGCT TCG GGCC TTTTCCTCTTTTTTG TERM 80 248217 - 248245 + G 91 -8.9 -4.88687 | gap 1, overlap 248212 248211 GCGCTTTTGTGCTGC TGCTGACGGCCG CGTTCT CGGTCGTC-GCA TTCTTTTTTGTTTGG sdhC 247883 - 248266 + | succinate dehydrogenase cytochrome b556 subunit (sdhC) sdhD 248257 - 248607 + | succinate dehyrdrogenase subunit D AMF_218 248758 - 250128 + | hypothetical protein thiD 251454 - 250672 - | phosphomethylpyrimidine kinase (thiD) AMF_220 252127 - 251462 - | hypothetical protein perM 253480 - 252128 - | permease perM-like protein (perM) AMF_222 254106 - 253753 - | hypothetical protein rpsD 254136 - 254888 + | 30S ribosomal protein S4 TERM 81 254882 - 254898 + T 76 -6.5 -4.45083 | overlap 254883 CGTTGAGTTCTTTTC CGGGTAG TGG CTACCCC TTTTGTCCATGTGGC TERM 82 254883 - 254897 + T 70 -10 -3.26568 | overlap 254882 GTTGAGTTCTTTTCC GGGTAG TGG CTACCC CTTTTGTCCATGTGG AMF_224 256453 - 255305 - | hypothetical protein AMF_225 257334 - 256513 - | hypothetical protein pgpA 257825 - 257301 - | phosphatidylglycerophosphatase A (pgpA) TERM 83 257688 - 257676 - GH 70 -3.3 -4.8269 | TACAACCACCAAAAA GGCAC CAC ACGCC GCACTAGAAACTATC TERM 84 257737 - 257715 - GH 74 -2 -5.17576 | gap 1, overlap 257718 TATCAAGGGAAAAAA CACGAGAGC TGCTGC GCTCCC-TG CAGTGCCCGGAGCCA TERM 85 258092 - 258077 - g 76 -4.6 -4.95806 | AAACCACCACAAAAA CCCACC GAGA GGCGAG GGACCCCTAACGCCG AMF_228 257919 - 258212 + | hypothetical protein TERM 86 259896 - 259884 - g 70 -4.8 -4.68209 | AGGCCAAGAAAGAAA GGCA GAATG TGCC CGCCGGAGATCTAAA tig 258533 - 259933 + | trigger factor (tig) clpP 259938 - 260585 + | ATP-dependent clp protease proteolytic subunit (clpP) clpX 260595 - 261812 + | ATP-dependent clp protease ATP-binding subunit (clpX) TERM 87 262138 - 262153 + G 74 -4 -5.00616 | overlap 262138 CCAAGGTTCTGAATT TCATCG ATGG TGATGA TTTTTTGAGCGCGGA TERM 88 262289 - 262279 - g 83 -3.2 -5.52986 | AGCTCAGCAAAAAAA CCCA GTC TGAG GTTGTTGCCTCCGCA lon 261831 - 264257 + | ATP-dependent protease LA (lon) TERM 89 264435 - 264455 + F 70 -8.2 -3.78436 | GGATCTTTGTGTTGT GGGTCCGG GGATG CCGGAGCC TTGTTCGTGTAGGTT fmt 264711 - 265685 + | methionyl-tRNA formyltransferase (fmt) AMF_234 265844 - 266677 + | hypothetical protein AMF_235 266881 - 267720 + | hypothetical protein thiE 268135 - 269157 + | thiamin monophosphate synthase (thiE) AMF_237 270717 - 269404 - | hypothetical protein TERM 90 270185 - 270195 + g 74 -4 -4.98255 | ATGGCTTCCGCCGCC GAAA CTA TTTC TTTTTGTCCTTGCAC TERM 91 270685 - 270675 - G 70 -4.6 -4.70169 | CTACAGGGAACAAAA CCCA CTC CGGG CCGACTATACACAAT AMF_238 270855 - 271136 + | hypothetical protein TERM 92 271819 - 271800 - gT 79 -12.8 -3.03124 | CGCCACCGCGGAACA GCCGCGGC CCTC GCCGCAGC CGCGCACCTGTACCG ftsK 271111 - 273384 + | cell division protein (ftsK) AMF_241 274711 - 273659 - | hypothetical protein TERM 93 273794 - 273809 + g 82 -7.5 -4.60797 | CACAAGTGAGGACTG GGGCG ATTCGG CGCCC TTTTCTGTGTACACC TERM 94 273998 - 274013 + g 80 -3.2 -5.26316 | CAGGAATAAGCCAGA CTGGAA GCAG TACCAG TTTTTTCTGCGCTGC TERM 95 274068 - 274079 + g 70 -4.4 -4.60317 | GAATCTCCCCTGCGG GCTA CATC TAGC TTTTCCTTCTTGTAT TERM 96 274403 - 274376 - G 70 -10.6 -2.96546 | overlap 274375 GAGAATACAGGAAAG CGCGGCGTATAA TGCA TAATACGCCACG ACGACTTTGGCTTTG TERM 97 274572 - 274596 + g 73 -5.6 -4.71708 | AACCGCGACGCTCTG CCTATACGGC CCCTT GCCGAGTGGG TTTTACTTTCTTCTT argD 276117 - 274939 - | acetylornithine aminotransferase (argD) barA 276281 - 277705 + | histidine kinase sensor protein (barA) AMF_245 278570 - 277719 - | hypothetical protein TERM 98 278247 - 278267 + gT 75 -8.9 -3.86816 | overlap 278248 CTCCCTTTCCATGGC CTTCCTCCC CGG GGGCGGAGG TATTCTTTTTATCGG TERM 99 278248 - 278269 + gT 71 -5.1 -4.53475 | gap 1, overlap 278247 TCCCTTTCCATGGCC TTCCTCC-CC GGG GGCGGAGGTA TTCTTTTTATCGGCT tolR 279012 - 278536 - | TOLR protein (tolR) tolQ 279685 - 278993 - | TOLQ protein (tolQ) TERM 100 279803 - 279819 + H 72 -3.7 -4.84918 | overlap 279799 CGTTGTTTGCTTTCC CTAGTAC AGG GTAGTAG TTTTCTCTTTGTGCG TERM 101 281075 - 281085 + G 87 -4.6 -5.42198 | opp_overlap 281065 AAAACCCCCCACGCG CGGC GGA GCTG TTTTCTTTTTTGGGA mutL 279862 - 281760 + | DNA mismatch repair protein (mutL) smf 282906 - 281773 - | DNA processing protein, chain A dprA (smf) TERM 102 282280 - 282265 - G 73 -5.4 -4.65895 | gap 1, overlap 282267 GCGTTGAGGGAAAAA GCTCGCC TTC GGC-AGC GACGAAAATGGCAGC trmU 284604 - 283441 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) TERM 103 284335 - 284353 + g 73 -8.8 -3.70863 | overlap 284341 GTAATGCGGGAACCC GAGCGTTG ATG CAACGCGC TTTGCGTCATATATA pilT 285814 - 284792 - | putative twitching motility protein (pilT) fabB 287398 - 286115 - | 3-oxoacyl-(acyl-carrier-protein) synthase II (fabB) acpP 287850 - 287503 - | acyl carrier protein (acpP) rpmG 288607 - 288437 - | 50S ribosomal protein L33 (rpmG) AMF_255 288752 - 289492 + | hypothetical protein AMF_256 289480 - 289998 + | hypothetical protein TERM 104 289999 - 290011 + F 91 -9.1 -4.77567 | opp_overlap 289999 289998 289996 GCCAAAGGCAAATAG CCGCA GGG TGCGG TTTTATTGTCAAACT AMF_1037 290171 - 290413 + | hypothetical protein AMF_257 290965 - 291885 + | hypothetical protein TERM 105 291900 - 291920 + T 100 -19.7 -3.48668 | opp_overlap 291888 291887 AACCTACCTTTGTCC CCCCCCCCC GGC GGGGGGGGG TTGTAGTGTAGTGCT AMF_258 295583 - 291981 - | hypothetical protein TERM 106 295482 - 295468 - G 74 -10 -3.56099 | GACAACGCTTTCAAA CACGCA TGT TGCGTG ATGGCCGCCCTTGCC AMF_259 295669 - 295932 + | hypothetical protein coq7 296047 - 296433 + | ubiquinone biosynthesis protein (coq7) AMF_262 296479 - 296973 + | hypothetical protein TERM 107 297046 - 297069 + T 86 -11 -4.08692 | opp_overlap 297028 TATTGCTGGCCGTGC CTTCCCGCAC CAGT GTGTGGGAGG TTTTAACCAAAATTG AMF_264 299800 - 297092 - | hypothetical protein TERM 108 297339 - 297349 + g 76 -3.2 -5.20783 | AATTTTGGGAAGAAA GAGG TGT TCTC TTTTTGTGTTTCAGT TERM 109 297553 - 297574 + g 91 -4.3 -5.58209 | overlap 297554 AGCGCGATTGTGGCT TCTCTTCCG AGTG CGGGAGCGG TTTTTTTACGTTTGA TERM 110 298876 - 298841 - G 86 -6.1 -5.10064 | opp_overlap 298842, overlap 298843 TTCAATAGACAAAAA CACGCGTTTAAGGCA TTGCTT TGCCTTCCACGCGCA TTCGTTAGAGCTGTT TERM 111 298874 - 298843 - G 79 -8.7 -4.16832 | opp_overlap 298842, overlap 298841 CAATAGACAAAAACA CGCGTTTAAGGCA TTGCTT TGCCTTCCACGCG CATTCGTTAGAGCTG TERM 112 299896 - 299914 + r 73 -8.8 -3.76226 | opp_overlap 299879, overlap 299899 TATCCCGGCGGCGTA CGTTCCCG CTC CGGGAGTG TTATGTTGTCACATT AMF_265 304536 - 299923 - | hypothetical protein TERM 113 301232 - 301247 + g 76 -6.1 -4.62783 | opp_overlap 301211 301230 TTGATGTTCAAAGGC GCGTC AGTAAC GACGC TTTTTGCGCTGAATG AMF_266 304774 - 304544 - | hypothetical protein AMF_267 309181 - 305054 - | hypothetical protein AMF_1038 309761 - 309477 - | hypothetical protein AMF_268 318612 - 310096 - | hypothetical protein TERM 114 310880 - 310895 + g 76 -3.2 -5.0916 | overlap 310872 310882 TCCTGCTGTAGATCT GAGAAG TCTA CTTCGC TTTTTATGTTACCCA TERM 115 311982 - 311998 + g 72 -8 -3.93695 | overlap 311974 AGACAGCGTGCACAT TGCCCA TATTT TGGGCA TTTCTGGCTGCTGCG TERM 116 312605 - 312615 + g 71 -6.8 -4.13037 | TGAGGCGGATGTTGC CGTG ACA CACG TTCTTTGGTGTTTAT TERM 117 313485 - 313496 + g 74 -4.4 -4.85822 | ATTTTATATTGACCG TCAG ATTG CTGA TTTTATATTTATCCT TERM 118 315105 - 315118 + g 71 -5.3 -4.48449 | CAATTGTGACTATTT CTTTG CCAC CAAAG TTTATGTTTTGCTCG TERM 119 318540 - 318550 + g 84 -4.6 -5.24531 | overlap 318536 CCATTCGCAAGCGGA GCTG CTT CGGC TTTTTTCTGAACAAT AMF_269 321733 - 318899 - | hypothetical protein TERM 120 319256 - 319274 + g 74 -3.9 -4.9448 | gap 1, overlap 319255 319258 GGCTGCGCAGATTCC GC-CCAAA ATTT TTTGGTGC TTTTCTTTGGTGGGT TERM 121 319437 - 319457 + g 79 -8.3 -4.3767 | TGTTCTGGATCAGTC CCCAACACT GAA AGTTTTGGG TTTGTTATCCTGTAC uvrD 324418 - 322403 - | DNA helicase II (uvrD) AMF_272 324584 - 326335 + | hypothetical protein TERM 122 326902 - 326918 + F 82 -7.3 -4.65747 | GTACTTGGACAGTTA CCAAGTG AAA TACTTGG TTTTGTTGAGAATTA TERM 123 330089 - 330107 + G 71 -6 -4.41348 | overlap 330097 TCAGAGTTGTCGGGC GTAGCACT CAG GGTGTTAC TTTGTTTAAGACCGA gyrA 327484 - 330210 + | DNA gyrase subunit A (gyrA) nth 330210 - 330842 + | endonuclease III (nth) AMF_275 331195 - 331800 + | hypothetical protein TERM 124 332061 - 332049 - g 73 -9.1 -3.72576 | TTTGCTCTGACCAAA GCCTC ATG GAGGC GGGAGAAGAGCTGAG TERM 125 332804 - 332818 + G 71 -7.1 -4.17556 | AACGTGCAGGTTATT CCGCA GTATA TGCGG TTTCTTAGGGGTGTG htpG 331865 - 333802 + | heat shock protein (htpG) AMF_1039 334048 - 334428 + | hypothetical protein AMF_1040 335564 - 335103 - | hypothetical protein purB 337798 - 336482 - | adenylosuccinate lyase protein (purB) TERM 126 336962 - 336974 + g 100 -3.3 -5.93809 | opp_overlap 336957, overlap 336963 GCCAGTCAAATTCTC ACCCA GAA TGGGA TTTTTTTTGTGAGGC TERM 127 336963 - 336973 + g 71 -6.8 -4.15201 | opp_overlap 336957, overlap 336962 CCAGTCAAATTCTCA CCCA GAA TGGG ATTTTTTTTGTGAGG TERM 128 336992 - 337003 + g 78 -5.8 -4.83169 | TTTTTTGTGAGGCAT GGCA GAGC TGCC TTTTTGTCCGGACGT TERM 129 338277 - 338297 + H 81 -6.1 -5.0133 | overlap 338278 338280 GGTCTGTCTGCCTGG TTGCACGGT GTG GCCGTGTAG TTTTTTGCGGGAGTA uvrC 338625 - 340466 + | excinuclease ABC subunit C (uvrC) AMF_281 345042 - 340594 - | hypothetical protein TERM 130 341025 - 341039 + g 74 -4.2 -4.78107 | overlap 341021 CACCATATTCTGCTT CCGC GGCAGGG GCGG TTTTTGGTCGTGCTG TERM 131 342373 - 342388 + g 74 -4 -4.96762 | overlap 342374 CCTAAAACTCTCTAC TGACTT CTTC AAGTCG TTTTTCTGCTGTCTG birA 346232 - 345504 - | biotin-(acetyl-CoA carboxylase) (birA) gst 346909 - 346241 - | glutathione S-transferase (gst) TERM 132 346979 - 346948 - R 76 -12.4 -2.93348 | gap 1, opp_overlap 346953, overlap 346943 346953 TGCATCAATACCACA CTCAAGCCAGAAGCA CAA CGCC-CTGGCTTGAG TACTGAGCCAACTTA AMF_284 347534 - 346992 - | hypothetical protein TERM 133 348289 - 348256 - g 100 -6.5 -5.38326 | opp_overlap 348262 GCAAGGAAAGAAAAA CCCAGCGCGCGCTAC ACAT GCTGCGCTTGCTAGG TATGGATAGCCACAG TERM 134 348741 - 348753 + G 87 -4.7 -5.40072 | overlap 348742 GTGGCTGTGTGTATG CGGCC CGA GGCCA TTTTTTTGCGACAGA TERM 135 348742 - 348752 + G 72 -8.2 -3.83561 | overlap 348741 TGGCTGTGTGTATGC GGCC CGA GGCC ATTTTTTTGCGACAG potA 347865 - 348941 + | Spermidine/putrescine import ATP-binding protein (potA) recR 349281 - 349793 + | recombination protein (recR) znuA 350926 - 350042 - | high-affinity zinc uptake system protein (znuA) znuC 350906 - 351643 + | zinc uptake system ATP-binding protein (znuC) TERM 136 352486 - 352468 - g 70 -10.4 -2.89683 | opp_overlap 352466 352462, overlap 352472 ACCTCATGGTAGACA GCAACAAT CGG ATTGTTGC GGTGGATTTCGGCAT TERM 137 352751 - 352764 + G 79 -6.7 -4.63218 | opp_overlap 352750 352749 GTTTAACATGAAAGT GCAAC CACA GTTGC TTTTGTTGCAGAAAA TERM 138 353021 - 353033 + G 74 -4.7 -4.8269 | overlap 353003 GCAGACCACGCAACT CGGCG CTG CCCCG TTTTTGATGCTTGTC ubiB 351636 - 353087 + | ubiquinone biosynthesis protein (ubiB) TERM 139 353544 - 353554 + G 72 -8.2 -3.84266 | opp_overlap 353544 353543 CGGGCTTGCCCAAAT GGCC CAC GGCC TTTCGTATGCGCTGT TERM 140 353967 - 353953 - g 84 -4.2 -5.31275 | opp_overlap 353953 353964 TTGCAGGATAAAAAA CGCG TCCTTTT CGCG TTTTGCGTATTTCAA AMF_290 353125 - 354330 + | hypothetical protein miaB 355857 - 354493 - | 2-methylthioadenine synthetase (miaB) AMF_293 358636 - 355994 - | hypothetical protein TERM 141 358143 - 358161 + g 76 -11 -3.18582 | CGGTATGCGGGGGTG TGTTCCCC TGC GGGGGACA TTAGTGGATCGGGTG AMF_294 359762 - 358932 - | hypothetical protein TERM 142 359946 - 359965 + G 78 -3.6 -5.14163 | gap 1, overlap 359948 TTAGAGTGGTCGCGA TTCTC-CAC ACT GTGCGAGGA TTTTTGTTGCTGCGT sucA 359901 - 362693 + | 2-oxoglutarate dehydrogenase E1 component (sucA) TERM 143 363265 - 363230 - T 73 -9.1 -3.73224 | gap 1, overlap 363237 TTACCGCGCACTAAA TGCAC-AATGGGGCGT GATGA ACGCCCCACCCGTACA GGTTGTCGAGTTTTT TERM 144 363257 - 363237 - T 82 -12.6 -3.48807 | overlap 363230 GCACTAAATGCACAA TGGGGCGT GATGA ACGCCCCA CCCGTACAGGTTGTC AMF_296 364430 - 363279 - | hypothetical protein TERM 145 364312 - 364332 + g 71 -6.1 -4.30576 | ATCTCCTCTATATGT CTGACTTTC AAG GGGAGTCGG TTTTCCTCATGAGGG dapA 365552 - 364647 - | dihydrodipicolinate synthase (dapA) TERM 146 365736 - 365759 + r 73 -3 -4.91109 | overlap 365737 ATGGTGAGCTAAGCT CCCTGACCGT GGCC GCCGTCAGGA TTTTTGTGCTCAGGG pkcI 366128 - 365769 - | protein kinase C inhibitor 1 (pkcI) AMF_300 367375 - 366125 - | hypothetical protein TERM 147 366313 - 366335 + g 73 -3.2 -5.02074 | opp_overlap 366318 366321, overlap 366318 CCTTGCTGATATCCT GAGAAGCAGC TGC GCCGCTGCAC TTTTTTAGGAACTCA TERM 148 367299 - 367324 + g 79 -9 -4.1673 | overlap 367323 GTAGTGGCGAAATCG GCGGCAGTTG CGGCAC CAACTCCCGC TTTCTTGAGAGCTTC TERM 149 370078 - 370093 + G 84 -4.7 -5.24129 | GTTTCCCAAAAATGT TCTGG AGAGAG CCAGA TTTTTTATGGGGGAG mutS 367712 - 370171 + | DNA mismatch repair protein (mutS) AMF_302 370152 - 370436 + | hypothetical protein TERM 150 371205 - 371216 + G 74 -4.4 -4.86621 | ATGCACGAGTGGGGG TGGA GAAT TCCA TTTTTGGTTGCGGGT TERM 151 371347 - 371364 + G 70 -3.3 -4.81551 | opp_overlap 371345 CTCTGCTGCAAAACG CCGGTGG AGTG CTGCTGG TTTTTGCTATGGCTG proP 370584 - 371933 + | Proline/betaine transporter (proP) TERM 152 372644 - 372655 + G 84 -4.4 -5.24129 | ATGCACGAGTGGGGG TGGA GGAT TCCA TTTTTTATCGCAGCC proP 372062 - 373354 + | Proline/betaine transporter (proP) nadE 374893 - 373373 - | NH3-dependent NAD+ synthetase protein (nadE) TERM 153 373645 - 373656 + g 74 -4.4 -4.89477 | opp_overlap 373645 TCTTTTGACAAAGAC TACC CCGC GGTA TTTTGTTGTTCCGCC TERM 154 374259 - 374272 + g 71 -6.7 -4.14257 | opp_overlap 374258 374268 TCTTCGGACCAAAGG GCACA CAAG TGTGC TTTGTCGTTGTTACA hemB 375940 - 374900 - | delta-aminolevulinic acid dehydratase (hemB) TERM 155 375837 - 375867 + g 82 -8.3 -4.58395 | gap 1 ACGATATTGCGCATC CAAGCGTG-GGCGC GCCT GCGCCGCATTCTTG TTTTTGGAAACTGCA TERM 156 376524 - 376508 - g 74 -2.3 -5.06414 | GTCGCCGAAGAAAAA GTTTATT TGG ATTAAAC GTGACATAACTTCCA pbpA2 376137 - 377726 + | penicillin-binding protein (pbpA2) AMF_308 377766 - 380606 + | hypothetical protein proP 380768 - 382234 + | Proline/betaine transporter (proP) ssb 383145 - 382606 - | single-strand binding protein (ssb) mcd 383316 - 384698 + | malonyl-CoA decarboxylase (mcd) TERM 157 384813 - 384829 + G 74 -2.1 -5.06414 | overlap 384814 AATAGCAAGCTATTC TCCGGGG CCT CTACGGG TTTTTGTTCCGAGCC gatB 384711 - 386168 + | glutamyl-tRNA amidotransferase subunit B (gatB) fab1 386668 - 387516 + | enoyl-[acyl-carrier-protein] reductase (fab1) TERM 158 387624 - 387647 + F 71 -11 -2.79796 | gap 1, opp_overlap 387621 387611 AATGTGCAGCAATTG GCGC-GCATGG GTG CCGTGCTGCGC TCTACTGCCGTCAAA TERM 159 388782 - 388763 - g 72 -3.6 -4.79752 | gap 1 GCCAAGAACATAAAA TCCAACATC AGG GA-GCTGGA GGGTGCGCTGAACAA dnaA 387758 - 389173 + | chromosomal replication initiator protein (dnaA) AMF_315 390272 - 389277 - | hypothetical protein TERM 160 389618 - 389636 + g 100 -8.8 -5.39221 | opp_overlap 389615 389620, overlap 389620 ATTCGGGACACATCA CATCCGAG CTC CTCGGAGG TTTTTTAGTTCTTAT TERM 161 391033 - 391010 - g 79 -8.9 -4.2349 | TCGTCAGAGGGAAAA TTTGCGCCG CATCTT CGACGCAAA TCAGGAATGCAATGC nadD 390352 - 391056 + | Nicotinate-nucleotide adenylyltransferase (nadD) TERM 162 391060 - 391072 + F 75 -9.1 -3.87869 | opp_overlap 391046, overlap 391067 ATGCCCGTGTAGCGG CGAGC ACG GCTCG TTTGTCGAGGCTTGG pdxJ 391230 - 391997 + | pyridoxal phosphate biosynthetic protein (pdxJ) TERM 163 392270 - 392255 - T 72 -8.2 -3.84825 | overlap 392256 CCGAGCCACATTAAA CGCCGC CCAC GCGGCA CACCTCCCACACTGC hupB 392958 - 392683 - | Histone-like bacterial DNA-binding protein TERM 164 393150 - 393164 + r 73 -2.8 -4.95155 | CTGGTAGCGCATTTG GGAATA TAT TAATCC TTTTTATCCTATAGA dnaX 394058 - 393168 - | DNA polymerase III subunit gamma TERM 165 393995 - 394007 + g 74 -4.7 -4.83615 | CAGCGCTGCTATTCG CGAGC AGA GCGCG TTTTTGTGCGGCGTG AMF_320 394633 - 394040 - | hypothetical protein TERM 166 394710 - 394700 - H 74 -2.4 -5.14563 | TTGTCCACGAAAAAA CCAG CCA CGGG TACAGCACTTTAGTG TERM 167 396021 - 396008 - g 76 -3.1 -5.14563 | gap 1, overlap 396010 GTTGCGAGGAAAAAA CT-CGC GAT GCGCAG CACGCTGGACCGGCA coaE 395297 - 396073 + | dephospho-CoA kinase (coaE) thiC 397914 - 396112 - | thiamin biosynthesis protein (thiC) TERM 168 397135 - 397150 + g 74 -4.6 -4.82333 | GTCCGCTCCGTACGC GACGGC GAGC GCCATC TTTTTCACTTCTTCT TERM 169 397955 - 397965 + r 76 -8.2 -4.24183 | opp_overlap 397955 397953, overlap 397952 GTTTAGGATAGAACA GGCG TCA CGCC TTCTTGTTTGTTCTC AMF_323 398624 - 397959 - | hypothetical protein TERM 170 398642 - 398632 - R 79 -8.2 -4.30014 | CCTAGCAATGGAAAA GGGC GAA GCCC AACAGCAGCTATATA rpoZ 399075 - 398689 - | DNA-directed RNA polymerase omega subunit (rpoZ) AMF_325 399745 - 399410 - | hypothetical protein TERM 171 400022 - 400038 + H 74 -3.7 -5.03994 | CCGGTGCAGAGTTTG TATGCTA TGA TTGCATA TTTTTATGTGTCAGG TERM 172 400330 - 400352 + G 80 -10.6 -3.67976 | overlap 400331 ATGGGCTCAAAGTTC TGCATCCCAT AGG GTGGGATGCG TTTGGGCTTCCTGCA TERM 173 400331 - 400351 + G 74 -11.9 -2.80464 | overlap 400330 TGGGCTCAAAGTTCT GCATCCCAT AGG GTGGGATGC GTTTGGGCTTCCTGC TERM 174 401424 - 401444 + G 72 -9.7 -3.34398 | overlap 401423 401439 401440 GGTATAGTGCCGGTG GATAGGCAG GAT CTGCCCATC TCTTTGCCCGAGGAG TERM 175 401940 - 401918 - g 80 -4.8 -5.10208 | CAAGTCCAAGAAAAA TGTTGTGGAT CCC AGCCACATCA TAAAAAAATACGGGG leuS 400116 - 402605 + | leucyl-tRNA synthetase (leuS) TERM 176 403527 - 403543 + GF 76 -4.4 -4.96848 | overlap 403528 GGGACAGGGTCTTGG TGGAGA CAGAC TCTCCG TTTTTGTGTCCGGAG AMF_328 402923 - 403717 + | hypothetical protein TERM 177 404286 - 404275 - gT 70 -2.2 -4.98758 | AAAAACGGACAAAAA CACC CATG GATG CGCTGTCAGATGGAG pyrF 403674 - 404393 + | orotidine 5'-phosphate decarboxylase (pyrF) TERM 178 404448 - 404462 + T 73 -5.6 -4.61231 | overlap 404441 404450 GGATGTTGTGGTCGC GGCCCA TTT TGGGGC TTTTTGGCCGTATGG ccmE 404908 - 404486 - | cytochrome c-type biogenesis protein (ccmE) surE 405815 - 405030 - | stationary-phase survival protein (surE) nuoC1 407337 - 406774 - | NADH-ubiquinone oxidoreductase subunit (nuoC1) TERM 179 407361 - 407371 + r 74 -8.2 -4.01089 | CGCCCCCCTCACTCC GGGG TTA CCCC TTATTATCTTCTGCT nuoB 407915 - 407343 - | NADH dehydrogenase I chain B (nuoB) nuoA 408282 - 407875 - | NADH dehydrogenase I chain A (nuoA) uvrA 411469 - 408599 - | excinuclease ABC subunit A (uvrA) TERM 180 408994 - 409013 + g 76 -4.2 -4.93877 | gap 1, overlap 408995 CATAGCCCATGCCGA CCTCC-CGC AAG GCGTGGAGC TTTTCTTTGATCAAC nusB 412036 - 411503 - | N utilization substance protein B (nusB) ribH 412562 - 412029 - | riboflavin synthase, beta subunit yidC 414453 - 412510 - | 60kD inner-membrane protein (yidC) TERM 181 413512 - 413523 + gr 78 -5.8 -4.75356 | overlap 413498 CGTTGCGCCAACTCT GGCA CCAC TGCC TTTTTGCATGTCTTT pssA 415386 - 414544 - | CDP-diacylglycerol--serine O-phosphatidyltransferase (pssA) TERM 182 415321 - 415296 - G 100 -14.1 -4.16016 | gap 1, opp_overlap 415295 415294, overlap 415297 TGAGCCCTGAACAAA GCCCCAGCATGG TGA CCATGCTGG-GC AGCAATCTTGTTATT TERM 183 415321 - 415297 - G 86 -14.3 -3.09288 | opp_overlap 415295 415294, overlap 415296 GAGCCCTGAACAAAG CCCCAGCATGG TGA CCATGCTGGGC AGCAATCTTGTTATT psd 416151 - 415447 - | phosphatidylserine decarboxylase proenzyme (psd) AMF_342 419811 - 416410 - | hypothetical protein TERM 184 417902 - 417920 + g 86 -3.1 -5.68489 | overlap 417902 CAGGCTTGTAGAAGT GGCAG AAAATCTGG CTGCC TTTTTTCTTGTTGTG TERM 185 419444 - 419457 + g 84 -2.3 -5.53991 | GTTAAGTTCAACCCT TCCGG GCTA CCGTA TTTTTTTAATGCATA TERM 186 419878 - 419856 - R 76 -6.2 -4.65916 | overlap 419875 TCTACCGCAACAAAA TGCGTCCGCG TGC CACAGATGCA GGCCACCCAGCCGGC TERM 187 420003 - 420024 + r 73 -3 -4.98436 | gap 1, overlap 420006 CGTTAGTGCCGGCGG CATCCAGTC CCTGT GGCTGG-TG TTTTTGTGGTATTCG TERM 188 420193 - 420144 - R 71 -6.4 -4.30719 | gap 2, opp_overlap 420148, overlap 420146 GTGCTTGATAACAAA CTGTGTGCCGCACAACCAGCACCG TTAC CGG-G-TGGCTGTGCAGCACTATG TACCCAAGCTTAGTA TERM 189 420148 - 420189 + r 70 -10.2 -2.87463 | gap 2, opp_overlap 420146 420144 TTGATAACAAACTGT GTGCCGCACAACCAGCACCG TTAC CGG-G-TGGCTGTGCAGCAC TATGTACCCAAGCTT AMF_343 424017 - 420229 - | hypothetical protein TERM 190 420365 - 420381 + g 79 -6.5 -4.63218 | GATCTGCCTGCCTTT TCCGCTG ATG CAGGGGA TTTTCTTCCCGCCGC TERM 191 422068 - 422086 + g 70 -3 -4.81212 | GGGTGTACTGCTCAC GTTCCGTG GTG CGGGGGAC TTTTGTTCTCCTCCC TERM 192 424076 - 424060 - H 74 -2.3 -5.16237 | opp_overlap 424060 AAGTTTATTAAAAAA TTAATGA AAG TCAATAA ATTAATAATTAATAT TERM 193 425244 - 425225 - g 76 -8 -4.1822 | GGTGACCGGAACAAA TTACAAGA GATG TCTTGTAA TGCAGCCAAGCACGC murG 424199 - 425317 + | UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) efp 425464 - 426030 + | elongation factor P EF-P (efp) suhB 426033 - 426794 + | extragenic suppressor protein suhB (suhB) rluC 426791 - 427681 + | ribosomal large subunit pseudouridine synthase (rluC) AMF_349 429298 - 427931 - | Putative two-component response regulator with GGDEF and receiver domains AMF_350 429881 - 429495 - | hypothetical protein TERM 194 429559 - 429575 + gr 70 -8.7 -3.54129 | GCGCGTCCTGTCTCT GAGGCAT CCA GTGCCTC TTTACCGCGACTATC TERM 195 429642 - 429654 + gr 73 -3.3 -5.03314 | TAGAACCCCATCATC GCCCA TTA TGCGC TTTTTTGGCACTGCA AMF_351 430329 - 429847 - | hypothetical protein gdh 434701 - 430184 - | NAD-specific glutamate dehydrogenase TERM 196 430318 - 430330 + g 78 -6.3 -4.86731 | GATCCTCTGTGCTAT TTTGG GAT CCAAA TTTTGTTTGCGGCAG TERM 197 431873 - 431884 + gH 73 -5.8 -4.47611 | AGCCCATGCCCCTCT GGCA GTAA TGCC TATTTTTTTATGGTC TERM 198 433833 - 433861 + gH 70 -3.2 -4.82855 | ACAACGTATAGTGGC TCTTTACTTTGC GTCTG GCAACTTAAAGA TTTTTGGGTTTGCTG TERM 199 435010 - 435026 + H 76 -6.5 -4.52589 | overlap 435012 435022 GGTTATGATATGTCG CACAGGT GTT ACCTGGG TTTTATGTGCAGCAC AMF_353 435073 - 435822 + | hypothetical protein TERM 200 436096 - 436071 - g 86 -6.1 -5.10163 | AATCCGAAAACAAAA GTATTGCGGAG TTGA CTGCGCACTAC ACCAAGCTGTTTCAT cysS 435824 - 437224 + | cysteinyl-tRNA synthetase (cysS) nrdB 437415 - 438446 + | ribonuceoside-diphosphate reductase beta chain (nrdB) TERM 201 438468 - 438478 + G 73 -3.2 -4.92363 | overlap 438462 438461 CCTATCGGTGGTCTG CCGA CCC TTGG TTTTTGTGGCTATTT AMF_357 438424 - 439023 + | hypothetical protein TERM 202 439309 - 439295 - T 95 -5.6 -5.55769 | opp_overlap 439295 GCGGATAACAAAAAA TGCTGC GGA GCCGCA CAATCGTTTTTCTGC TERM 203 439437 - 439414 - T 93 -8.8 -5.03145 | CAAGTGCGCAAAAAA GCGCGTGACG CCTG CGTCACCCAC GCCATCCGGGATGCG AMF_359 439898 - 439614 - | hypothetical protein AMF_360 440114 - 441145 + | hypothetical protein TERM 204 442129 - 442169 + GF 71 -11.4 -2.79878 | gap 2, overlap 442128 442131 CTGCCATGACGGAGG CGC-ATCTCAGGCACA-TGT GGG ACATTGTGCCTGAGGTAGTG GTTTGGATGGATGGC TERM 205 442131 - 442167 + GF 70 -10.4 -2.9462 | gap 2, overlap 442129 442128 GCCATGACGGAGGCG C-ATCTCAGGCACA-TGT GGG ACATTGTGCCTGAGGTAG TGGTTTGGATGGATG TERM 206 442541 - 442530 - gf 71 -7.2 -4.11623 | TACCAGCAAATCAAA GCGC TGCA GCGC GAACAATACAATGGG dnaG 441273 - 443111 + | DNA primase (dnaG) AMF_1042 443080 - 443301 + | hypothetical protein TERM 207 443307 - 443285 - T 100 -9.9 -4.8667 | gap 1, opp_overlap 443302, overlap 443274 CAGACGCTAGAAAAA GCCGCG-TAG CTTC CTAGCGCGGC TGGGGTGCCGCAATT rpoD 445216 - 443276 - | RNA polymerase sigma factor (rpoD) nifR3 446339 - 445377 - | tRNA-dihydrouridine synthase TERM 208 446415 - 446404 - H 70 -4.4 -4.71776 | CAACACCGAACAAAA CATC GTAC GATG AGTGCTTAAGATTTT TERM 209 446695 - 446679 - g 70 -8.7 -3.56142 | TTCAGGAATAAGCAA GCACGAT AAC ACCGTGC AGAGGGCTATAGGGC ispE 446479 - 447348 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (ispE) AMF_367 447790 - 447473 - | hypothetical protein TERM 210 448218 - 448233 + r 76 -5.4 -4.88388 | gap 1, overlap 448221 TGCCGAGCAGGGTGT GCC-TCG CAC CGATGGC TTTTTGTGCGATTAT cutA 448678 - 448322 - | periplasmic divalent cation tolerance protein (cutA) dhkA 451205 - 448722 - | sensory box histidine kinase/response regulator (dhkA) TERM 211 449058 - 449087 + g 70 -11.5 -2.52676 | overlap 449047 449042 449041 GAATGCCCGCACCGG GTCTTCGTCTTCT ATTA AGAGGACGGAGGC TGAGTTGCCCCACTC AMF_370 452366 - 451704 - | hypothetical protein TERM 212 451978 - 451994 + g 83 -5.2 -5.09895 | ATCATGTCGAATGGG GATTTG TCCTC CAAATC TTTTTTAAGTACGTG AMF_371 452609 - 452929 + | hypothetical protein AMF_372 453132 - 454541 + | hypothetical protein TERM 213 454591 - 454605 + F 70 -2.8 -4.81357 | opp_overlap 454592, overlap 454592 GTCTACGTGTCGAAA ATCCTT TCC AAGGAC TTTATTTTATAATAT TERM 214 457067 - 457055 - g 81 -6.3 -5.01811 | CTATCAAAGGAAAAA GTGAT GAT ATCAC ACTGGAAGAAGCCGT topA 454666 - 457107 + | DNA topoisomerase I (topA) AMF_374 457882 - 457331 - | hypothetical protein TERM 215 458504 - 458516 + r 76 -7.7 -4.32201 | AACAAAAACTTACGC TGTGC GCC GCACA TTTTCCATTACTTCA TERM 216 458921 - 458898 - R 79 -6.6 -4.67697 | overlap 458900 GTGCAAAACAACAAA GGCTATGGCG TACT CGCCATCGTC GCTCAGCGAAAGCTC acpS 459239 - 458877 - | holo-(acyl-carrier-protein) synthase (acpS) proS 460513 - 459236 - | prolyl-tRNA synthetase (proS) TERM 217 459283 - 459299 + g 70 -4.3 -4.74103 | opp_overlap 459261, overlap 459285 CAGTACACTTTTCCG TTGCTCC GTT GGCGCGA TTTTTCAATTCCACC AMF_378 461835 - 460777 - | hypothetical protein coaD 462122 - 462634 + | phosphopantetheine adenylyltransferase trxB 463912 - 462935 - | thioredoxin reductase (trxB) TERM 218 463492 - 463472 - G 73 -3.1 -5.00616 | overlap 463473 463475 CTCTCCCTTAAAAAA CGAGCCATC ACA GGTGGCGCA GGCAGATACGCCCTT tdpX1 464538 - 463909 - | thioredoxin peroxidase 1 (tdpX1) TERM 219 465916 - 465950 + G 80 -4.8 -5.07107 | overlap 465917 465918 CTCCAGCATAAAGTT GCCGTTGTGCCGGGCG TAG CGTTTGGTGCACCGGA TTTTTTCAGGATTTC aatA 464770 - 466038 + | aspartate aminotransferase A (aatA) TERM 220 466124 - 466138 + T 74 -4.2 -4.82667 | overlap 466125 TGCAGCAACCTGTTA GCGTGA CAG TCACGG TTTTTAGTCTCCTGG ppiD 468296 - 466284 - | peptidyl-prolyl cis-trans isomerase D (ppiD) TERM 221 466543 - 466560 + g 74 -4.1 -4.93696 | TCGACAAGATCCTCC GGATAGT TGCT ACTACCC TTTTTCCTGTTTACC AMF_384 468941 - 468348 - | hypothetical protein AMF_385 470189 - 468960 - | hypothetical protein TERM 222 469680 - 469694 + g 74 -7.2 -4.2717 | GGCGGCCTTTTCTGA TTTCTG TGG CAGAAA TTTTGGTAAAATCAT TERM 223 470318 - 470329 + H 82 -3.6 -5.22006 | overlap 470302 CGACCAGATACGCTC GCTC GTTT GGGC TTTTTCTTCTGATGA TERM 224 470864 - 470837 - H 70 -4.2 -4.65895 | gap 1, overlap 470841 470860 TTTCGCAGCGAAAAA CCAC-TCCCTGCA AGA TACAGGAATGTAG TGTACAAAAACGCAG TERM 225 471394 - 471378 - H 71 -5.1 -4.53036 | overlap 471373 GCACAAACACCAAAA CCTCTTT GAT AGAGAGG CTAGCTGCGTAGCAC TERM 226 471685 - 471675 - H 72 -4 -4.86731 | CCCGTGTAAACAAAA TTCT TTT AGAA ACTTACGTTTTTATC mreC 471838 - 472725 + | rod shape determining protein (mreC) mreB 474048 - 472834 - | rod shape-determining protein (mreB) TERM 227 475061 - 475083 + G 70 -3.4 -4.84527 | gap 1, opp_overlap 475062, overlap 475062 475062 CTGCAAGGTTGTAAA TG-GCACCG CTAGGC CGGTGCGCG TTTTTGATGTCTAAA truB 474177 - 475097 + | tRNA pseudouridine 55 synthase (truB) TERM 228 475113 - 475130 + F 76 -3.3 -5.09685 | AGTTCTTTATGTAGC CGAGAGG AGGA CCTTGCG TTTTTATGTCTATTA rpsO 475136 - 475417 + | 30S ribosomal protein S15 (rpsO) TERM 229 475431 - 475443 + F 76 -6.9 -4.58395 | GATGTTGTTGTTTGT GCGCT ATA GGCGC TTTTTAGAGGGTAGG TERM 230 477466 - 477451 - g 87 -4.7 -5.38047 | opp_overlap 477464 TAGCGAGATAAAAAA CGAAC ACATAG GTTCG GTGTCCGATGTCCTG pnp 475469 - 477886 + | polyribonucleotide nucleotidyltransferase AMF_392 477892 - 478668 + | hypothetical protein lepA 478803 - 480602 + | GTP binding protein (lepA) AMF_394 481951 - 481583 - | hypothetical protein msp1a 482358 - 484670 + | major surface protein 1a (MSP1A) TERM 231 484947 - 484989 + F 84 -10.5 -4.05181 | gap 1, overlap 484985 TTGGGTTGTGTGCTT GGCAGGT-GCCGCGGCTTTC ATAT GAGCGCTGCGGTGACCGGCC TTTGCTGTTTGTGCT TERM 232 485989 - 486009 + G 78 -6.1 -4.90381 | GCTGGATTCTCCCGA TTCTCTGGC TAC GCTGGGGAA TTTTGTTGTGTTGGG mlp2 485225 - 486067 + | major surface protein 1a-like protein 2 (MLP2) TERM 233 486598 - 486585 - g 83 -9.5 -4.19238 | CCGTCAATGCCAAAA GGGGC CAAG GCCCC GCACCGCGGCTGGTG TERM 234 486619 - 486632 + G 78 -5.9 -4.87786 | overlap 486618 GCGGCTGGTGATGCT GGCGG ATCG TCGCC TTTTTGTGGAATTGC TERM 235 486787 - 486767 - g 71 -10.3 -3.0634 | AAGTTTACGTTAAGA GCGCAGCAG CGT CCGCGGCGC TTGGAGTGATGTCCT mlp3 486541 - 487416 + | major surface protein 1a-like protein 3 (MLP3) mlp4 487839 - 488774 + | major surface protein 1a-like protein 4 (MLP4) AMF_400 488796 - 489527 + | hypothetical protein TERM 236 490755 - 490735 - g 75 -8.9 -3.88946 | CAGCCCACACAAGAA GTTGCGCAG CAG CCGCGCAGC ACACCGGAGGAAGTA TERM 237 493889 - 493910 + G 78 -5.8 -4.84673 | AACGGACAGGAGCGC CGACGGAG GAAACA CTGCGTCG TTTTATGTTGTTTAG TERM 238 497769 - 497784 + G 71 -5.4 -4.55295 | gap 1, opp_overlap 497769 ATTCTTTACTAGAAA CACC-CG ATG CGAGGTG TTTATTTGTGAGCCC AMF_401 490351 - 497892 + | hypothetical protein AMF_402 497954 - 499783 + | hypothetical protein TERM 239 500874 - 500849 - g 76 -8.3 -4.19238 | TTTTCAAGGGTAAAA CTCATCACCCC CTCA GTAGTGATGAG CAAGACCAAGGACAT AMF_403 500183 - 502081 + | hypothetical protein TERM 240 502161 - 502177 + F 79 -7.2 -4.56358 | CCTCCAGAAAGTGCA GCCGCG GTATG TGCGGC TTTTGTGTGCATGTG TERM 241 502313 - 502301 - f 74 -6.9 -4.33803 | AAAGACACCAACAAA GCGGA TTA CCCGC AGTTCAACAGGTGGC TERM 242 503213 - 503229 + G 76 -6.7 -4.46212 | CGTTTTGTTCATGAG TTTGTTT TAA AAACAAA TTTTATCGTAACCGG TERM 243 503247 - 503265 + G 77 -12.4 -3.09878 | TTATCGTAACCGGGC CGCGCACC AAT GGTGTGCG TCTTCAATACGTGGG AMF_405 502658 - 504535 + | hypothetical protein AMF_1043 504557 - 504790 + | hypothetical protein TERM 244 506268 - 506254 - g 74 -8.5 -4.07885 | TATGTGCTGGTAAAA GCCGC GGTAT GCGGC ACGTATGAGGAAGGT TERM 245 506454 - 506425 - g 84 -4.8 -5.30616 | GCACTCAAAGAAAAA GCCGTGCGGGCG TCTGAG CTCTCGCATGGC GGCAATGTTCGCAAC AMF_406 504973 - 506886 + | hypothetical protein TERM 246 506962 - 506979 + F 76 -5.5 -4.89233 | TGTGTGTAACCGCGG CTTCCGC GCGC GTGGGAG TTTTTGCTGTTGCTG TERM 247 509363 - 509348 - g 77 -9 -4.07568 | GGTGCCGTGTTAAAA CTTGCC AACA GGCAAG AGTGCGAGATATTTT AMF_407 507686 - 509518 + | hypothetical protein AMF_408 509700 - 511862 + | hypothetical protein thiL 512761 - 511850 - | thiamin-monophosphate kinase (thiL) AMF_412 513039 - 513926 + | hypothetical protein bioA 514108 - 515391 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase AMF_414 515829 - 516164 + | hypothetical protein TERM 248 516243 - 516256 + T 100 -9.5 -5.26918 | ATAGCACCTAGATGC CGCGC AACT GCGCG TTTTTTGTCGGGTGT ksgA 517138 - 516326 - | dimethyladenosine transferase (ksgA) tpiA 517271 - 518077 + | triosephosphate isomerase (tpiA) TERM 249 518303 - 518319 + G 71 -6.5 -4.14056 | AATTTGCTCTACTTC CACAACC GCT GGTAGTG TTTATAATTTGAACT AMF_417 518061 - 519080 + | hypothetical protein gcp 519090 - 520115 + | O-sialoglycoprotein endopeptidase (gcp) AMF_419 520724 - 520074 - | hypothetical protein folB 520776 - 521129 + | dihydroneopterin aldolase (folB) TERM 250 521157 - 521173 + F 86 -3 -5.64274 | ATTTGTTAGAGTGCG GCAAGT TCAGC ATTTGC TTTTTTTATGCGTAG mdh 521181 - 522134 + | malate dehydrogenase ubiG 522806 - 522450 - | 3-demethylubiquinone-9 3-methyltransferase (UBIG) infB 522789 - 523514 + | translation initiation factor IF-2 AMF_424 523820 - 523578 - | hypothetical protein rpiB 524013 - 524453 + | ribose 5-phosphate isomerase (RpiB) ubiG 524546 - 525250 + | 3-demethylubiquinone-9 3-methyltransferase (UBIG) gcp 525857 - 525351 - | O-sialoglycoprotein endopeptidase (gcp) AMF_428 526073 - 525867 - | hypothetical protein AMF_429 527802 - 526315 - | hypothetical protein AMF_430 528506 - 527781 - | hypothetical protein AMF_431 528964 - 528557 - | hypothetical protein AMF_432 529325 - 528939 - | hypothetical protein TERM 251 529082 - 529096 + g 86 -5.7 -5.06735 | GCTGTAATGCATTCC TTGCG TACTT CGCAA TTTTTATGGTTTCTA AMF_433 529876 - 529322 - | hypothetical protein AMF_434 530226 - 529885 - | hypothetical protein putA 533871 - 530728 - | 1-pyrroline-5-carboxylate dehydrogenase (putA) TERM 252 532891 - 532901 + g 74 -2.4 -5.16237 | CACAAAGTCAATAGC GGCC AGC GCCC TTTTTTGATAAGCTT TERM 253 533920 - 533902 - H 78 -6 -4.85618 | AAAGAATCAACAAAA CGGCAAAA CAC TCTTACCG AGCTACAACAAAGCG TERM 254 533952 - 533933 - H 71 -6.3 -4.33417 | overlap 533934 533935 CCGAGCTACAACAAA GCGCCGC GCAGGG GCCGCGC AACATGAGCCCAAGA fabG 533956 - 534864 + | 3-oxoacyl-reductase (fabG) putA 535250 - 534918 - | 1-pyrroline-5-carboxylate dehydrogenase (putA) TERM 255 535299 - 535281 - H 78 -6 -4.85618 | AAAGAATCAACAAAA CGGCAAAA CAC TCTTACCG AGCTACAACAAAGCG TERM 256 535331 - 535312 - H 71 -6.3 -4.33417 | overlap 535313 535314 CCGAGCTACAACAAA GCGCCGC GCAGGG GCCGCGC AACATGAGCCCAAGA AMF_439 536267 - 537169 + | hypothetical protein rlpA 538020 - 537325 - | rare lipoprotein A precursor (rlpA) xthA2 539166 - 538219 - | exodeoxyribonuclease III (xthA2) TERM 257 539162 - 539183 + g 76 -7.3 -4.3767 | gap 1 GGAGTAGCGGATCCA CCCACTCACT TTA GGTG-GTGGG TTTGTTGTGGTGTAC AMF_442 539906 - 539172 - | hypothetical protein rpmJ 540020 - 540358 + | large subunit ribosomal protein L36 (rpmJ) AMF_444 540387 - 540746 + | Conserved family - Septum formation initiator AMF_445 541409 - 540759 - | hypothetical protein TERM 258 541258 - 541236 - G 86 -2.7 -5.66338 | gap 1, overlap 541239 541240 541250 AAAGAGAAGAAAAAA GCAGC-TGCA AAAA TGCAAGCCAC CCCGCTCAATTCTAC rpmA 541706 - 541434 - | 50S ribosomal protein L27 (rpmA) rplU 542018 - 541710 - | 50S ribosomal protein L21 (rplU) eno 542416 - 543789 + | Enolase 1 (2-phosphoglycerate dehydratase 1) (eno) hflX 543791 - 544837 + | putative GTP binding protein (hflX) purA 545056 - 544841 - | Adenylosuccinate synthetase (purA) TERM 259 545014 - 545027 + g 86 -8.1 -4.60797 | opp_overlap 545014 GTAAGGTTTCATATA CAGGC TCAA GCCTG TTTTGTATGTGGGGC AMF_451 545357 - 545046 - | hypothetical protein mraW 546235 - 545360 - | S-adenosyl-methyltransferase (mraW) TERM 260 545433 - 545444 + g 95 -5.8 -5.38054 | ACCTCCTCATCTGTC GGCA TGAT TGCC TTTTTATTTATCAAG TERM 261 546311 - 546322 + r 76 -5.8 -4.69664 | CTTTTTTGGGATACG GCCT ACCA AGGC TTTTTAGATCATATG ygfA 546943 - 546407 - | 5-formyltetrahydrofolate cyclo-ligase TERM 262 546918 - 546931 + g 74 -2.3 -5.10461 | overlap 546919 AAGCCGCGGTAATGG CCCCT CAGA AGGGA TTTTTCTTCCATAAA TERM 263 546983 - 546995 + H 74 -7.7 -4.13767 | opp_overlap 546985 546994, overlap 546994 CACAAAACCGTAAGC CATGG TAA CCATG TTTTGGCATCCGGGC TERM 264 549247 - 549233 - g 70 -2.7 -4.85782 | opp_overlap 549233 549238 549246 TGTCGCAAAAACAAA CTGGC ACCGG GCCGG CTTCTGCTACTAAGC TERM 265 551569 - 551543 - g 74 -12.4 -2.85351 | overlap 551545 GCTTGGTACACTACA TAGCACTCGCAA CAG TTGCGAGTCCTA GACTGAGCAAAGGGC TERM 266 551567 - 551545 - g 70 -10.6 -2.97747 | overlap 551543 TTGGTACACTACATA GCACTCGCAA CAG TTGCGAGTCC TAGACTGAGCAAAGG TERM 267 551922 - 551905 - g 70 -3.3 -4.76041 | CACACCCATGAAAAA GGAGGTG AGTT CATCCCC TACGCTGTGTTCGTC AMF_457 547228 - 552342 + | hypothetical protein TERM 268 553281 - 553261 - g 83 -5.5 -5.14985 | opp_overlap 553265 GCAAATAGAGAAAAA GCCATGTAT CTG ATACATAAC TTTGGCAACATATTG AMF_458 552565 - 554085 + | hypothetical protein AMF_459 555182 - 554613 - | hypothetical protein AMF_460 557126 - 555315 - | hypothetical protein TERM 269 556789 - 556772 - G 74 -4.1 -5.00616 | opp_overlap 556774, overlap 556783 CCTTCGGGGAAAAAA TATCCCG AAAG CGCGATA TTGACCTATCGCCAA TERM 270 556912 - 556897 - G 70 -8.2 -3.66356 | overlap 556907 556908 ATTCCCAACGCCAAA CCGCAC ACAA GCGCGG CAGTACCCCGCATGA trxB2 558353 - 557331 - | thioredoxin reductase (trxB2) TERM 271 557629 - 557614 - G 70 -4.6 -4.6821 | opp_overlap 557614 557615, overlap 557615 AACGGTAATAGAAAA TCCGCA TCTA TGCGGG TTTCTTCTTTAGAGG TERM 272 557614 - 557629 + g 76 -6.8 -4.56978 | opp_overlap 557614 557615, overlap 557615 AACGGTAATAGAAAA TCCGCA TCTA TGCGGG TTTCTTCTTTAGAGG TERM 273 558301 - 558290 - G 74 -3.6 -5.02231 | overlap 558292 GAAAAACAGTAAAAA GCCC GACC GGAC CGGCCCCAATAATAG pmbA 559766 - 558432 - | pmbA protein (pmbA) TERM 274 558514 - 558498 - G 82 -7.3 -4.65838 | overlap 558489 558506 558508 GACAGATCGCAAAAA CGACAAA TCA TTTGCCG CGCGCATGCCAGCAA folE 560372 - 559776 - | GTP cyclohydrolase I (folE) atpG 561248 - 560379 - | ATP synthase gamma chain (atpG) nuoD 561537 - 562733 + | NADH dehydrogenase chain D (nuoD) nuoE 562738 - 563247 + | NADH dehydrogenase I chain E (nuoE) dnaQ 563237 - 563935 + | DNA polymerase III, epsilon chain (dnaQ) AMF_468 565516 - 563972 - | hypothetical protein TERM 275 565167 - 565153 - G 71 -7 -4.22652 | opp_overlap 565153 GCATAGCAGCCAAAA CGCCAG ATA CAGGCG TGATTCTGCCATCCA AMF_470 565918 - 566556 + | hypothetical protein TERM 276 567023 - 567011 - g 87 -7.7 -5.00846 | GAAACATCATAAAAA GCATC GCG GATGC AGCAATAGGCCCCGA AMF_471 566992 - 568842 + | hypothetical protein TERM 277 568900 - 568882 - T 70 -4.5 -4.61633 | overlap 568872 568884 AGACACCCCCAAAAA CAGAGGG TTGCT CCCCCTA CTCAAGCCGCGAGTC AMF_472 569507 - 568974 - | hypothetical protein rpoH 570424 - 569501 - | RNA polymerase sigma-32 factor (rpoH) AMF_474 570495 - 570809 + | hypothetical protein AMF_475 570806 - 571051 + | hypothetical protein TERM 278 572755 - 572744 - g 72 -3.6 -4.83169 | ATTTGCCCAGAAAAA CCCG ACTG CGGA CACCTTGCTAACTAC TERM 279 573973 - 573983 + G 70 -3.2 -4.86731 | overlap 573964 TAAAAACCGGAAGGT CGGA TAT TCTG TTTTCTTTGCCCCAC TERM 280 577467 - 577448 - g 73 -5.7 -4.4727 | overlap 577453 GCAAGAGGCACAAAA CGAAACG GACAAA CGCTTCG TCAGGCACAAGGAGA TERM 281 578233 - 578283 + G 74 -11.1 -3.14132 | gap 1, opp_overlap 578245, overlap 578250 578259 CACCGCGCAGCAGTA CCGCTGACCGAAGGGATGGCCCCG ACGG CGGTG-CGTCTTTTCGGGCAGAGG TTGGTCAACCGCACG AMF_476 571491 - 581075 + | hypothetical protein nuoH 582279 - 581221 - | NADH dehydrogenase I chain H (nuoH) nuoG 584356 - 582281 - | NADH dehydrogenase I chain G (nuoG) TERM 282 583568 - 583578 + g 76 -6.8 -4.54047 | ATTCAAGCCATCGTA CGAG AAT CTCG TTTTATCTGAAATCC AMF_479 584579 - 584364 - | hypothetical protein gyrB2 587141 - 584760 - | DNA gyrase subunit B (gyrB2) ubiX 587475 - 588080 + | 3-octaprenyl-4-hydroxybenzoate carboxyl-lyase (ubiX) AMF_482 588618 - 588187 - | hypothetical protein TERM 283 588594 - 588582 - G 80 -3.3 -5.36689 | AAAGGAAAAAGAAAA GCAGC CTG GCCAC TGACAAAACCATATA TERM 284 588849 - 588862 + r 73 -3.1 -4.98255 | GCACGGCGTAACATA TGGCA AATT TGCTA TTTTTATAATTCACC AMF_483 590335 - 589112 - | hypothetical protein adx1 590660 - 590307 - | ferredoxin [2Fe-2S] adrenodoxin-like precursor adx1 (adx1) TERM 285 590718 - 590706 - R 79 -9.1 -4.18018 | TCTCTTCATGTAAAA GGGCA TCT TGCCC CACACAATCAACAAA hscA 592494 - 590686 - | heat shock protein (hscA) TERM 286 591248 - 591232 - G 74 -9.5 -3.56821 | AGTATACGTGGTAAA CTCTTGT GTC ACAAGAG CCGGCACCGGAGTAT TERM 287 591861 - 591849 - G 73 -5.5 -4.63527 | CCAGTACTTGAAAAA CCCCA TCA TGGAG CCTTAGCACGGAAAC hscB 592946 - 592482 - | chaperone protein (hscB) AMF_487 593334 - 592924 - | hypothetical protein nifU 593734 - 593312 - | iron-sulfur cofactor synthesis protein (nifU) TERM 288 593545 - 593564 + g 71 -5.8 -4.41797 | gap 1, opp_overlap 593544 CGAATGTCTTAAACT TGGCATCAA CTA TTG-TGCCA TTTTCATCTACTTTT nifS 594948 - 593722 - | cysteine desulfurase (nifS) (duplicated gene) TERM 289 594937 - 594916 - G 78 -2.2 -5.26875 | overlap 594920 CTGGTAATCAAAAAA CACAGGAG GTTGTA CTCCCTTG CTCCCCGTCATACTT nifS 596543 - 594981 - | Putative cystine defulfurase (nifS-like protein) TERM 290 596425 - 596413 - G 75 -9.1 -3.90922 | opp_overlap 596413 596412 ACCCTCTCCAAATAA CCCTC AGA GAGGG ATTGCTTGTCGGCTA TERM 291 596902 - 596913 + G 74 -7.2 -4.23892 | CTCTACAGGGTATTT GCCG TGAA CGGC TTTTCCGTCCTTCGG AMF_491 596743 - 597447 + | hypothetical protein lysS 597750 - 599351 + | lysyl-tRNA synthetase (lysS) AMF_493 599401 - 599838 + | hypothetical protein truA 600627 - 599884 - | tRNA pseudouridylate synthase A (truA) pyrB 601520 - 600624 - | aspartate carbamoyltransferase pyrB (pyrB) AMF_498 602342 - 601683 - | hypothetical protein atpC 602725 - 602339 - | ATP synthase epsilon chain atpC (atpC) atpD 604261 - 602795 - | ATP synthase beta chain (atpD) TERM 292 603517 - 603531 + g 70 -10 -3.28924 | opp_overlap 603497 CCATGGTCAAAGCGG TGAGGG CCA CCCTCA TTCTGGCCCCGGGTG mgtE 604619 - 606076 + | magnesium transporter (mgtE) TERM 293 607144 - 607117 - g 72 -4 -4.82855 | overlap 607121 CACGAAATTCAAAAA CCCAGAGCATCC TTAT GGCAACTCTGAG GATGCACCATCCGAG ftsJ 606560 - 607165 + | cell division protein (ftsJ) AMF_503 607657 - 608622 + | hypothetical protein AMF_504 608672 - 609613 + | hypothetical protein TERM 294 610387 - 610424 + G 75 -12.9 -2.52742 | gap 1, overlap 610386 610383 ATGGTCTGCACCGTA GCTGC-GCTGTGCACAAT AAT GTTGTGTACAGTAGCAGC ATGTTGTCCACCCAT TERM 295 610440 - 610476 + G 79 -8.7 -4.22883 | ATGTTGTCCACCCAT CATTGCAGCTGTAGCAG TGG CTGGCGTAGCTGCAGTG TTATTTTCAGTGATA AMF_505 610267 - 611847 + | hypothetical protein AMF_507 615363 - 612151 - | hypothetical protein TERM 296 614524 - 614543 + g 82 -10.7 -3.82603 | opp_overlap 614522 CCCACTTTGAATATT CCCCGCA GAAGTA TGCGGGG TTGTATTTGGAGCTT AMF_509 617437 - 615968 - | hypothetical protein argS 619320 - 617539 - | arginyl-tRNA synthetase (argS) TERM 297 620164 - 620180 + G 70 -4.4 -4.72272 | ACGAGTTTGCGCTCA GCCTAA AGATC TTGGGC TTTTTCCTGCACAGA recO 619545 - 620261 + | DNA repair protein RecO AMF_512 620340 - 620954 + | hypothetical protein AMF_1044 620966 - 621172 + | hypothetical protein AMF_513 622569 - 621139 - | hypothetical protein TERM 298 621570 - 621588 + g 83 -9.6 -4.14243 | opp_overlap 621572 GCGGTGCGGCGCATA CAGTTTGG ACA CCAGACTG TTTTAAGCTAGGATG TERM 299 622486 - 622460 - G 73 -5.7 -4.46112 | opp_overlap 622460 622462 622463, overlap 622462 TCTGACTCAAAGAAA TCCCGCGCTGG GCTGT CCGGCGCGATA TTCTCGAACGCAGCA TERM 300 622463 - 622483 + g 75 -12.5 -2.52623 | opp_overlap 622462 622460, overlap 622462 622460 GACTCAAAGAAATCC CGCGCTGGG CTG TCCGGCGCG ATATTCTCGAACGCA TERM 301 622622 - 622601 - R 78 -2.2 -5.27477 | overlap 622603 ACCTCAAGCAAAAAA TAGGCCGT ACCGGG ACGACCTC CACCCACACCGATAA TERM 302 622664 - 622638 - R 72 -9.6 -3.39803 | overlap 622640 CACCCACACCGATAA TATACCAAACTT GGC AAGCTTGGTACA CCGTTGATATATATG TERM 303 622662 - 622640 - R 70 -10 -3.26722 | overlap 622638 CCCACACCGATAATA TACCAAACTT GGC AAGCTTGGTA CACCGTTGATATATA ileS 626142 - 622837 - | isoleucine-tRNA ligase (ileS) TERM 304 625157 - 625127 - G 77 -9.7 -3.65351 | TCATCTTCACCGAAA CCGGGAGCAAGAT GCACT ATCCCGGTCCCGG CCCCTTCAGCCACAA TERM 305 626406 - 626394 - H 75 -9.1 -3.81755 | ATTGCCTAAACAGAA GGCCT AGT AGGCC GAATACTTTGGTCAA bcp 626506 - 626988 + | Putative peroxiredoxin (bcp) TERM 306 627038 - 627022 - gT 80 -2.9 -5.26316 | GTATTCCAGAAAAAA GCCCG TAAAGAT CAGGC TGTATCACAAAGAGG AMF_516 626954 - 627736 + | hypothetical protein AMF_1045 627994 - 627740 - | hypothetical protein AMF_518 628140 - 631172 + | hypothetical protein TERM 307 631215 - 631180 - T 78 -3.8 -5.15634 | GAGGTTAGTAAAAAA CAGGTATGCGCCCTGG CAAC CCATGGGGAGCACCTG GAGCAAGAATGGTGC prfB 632613 - 631597 - | peptide chain release factor 2 (prfB) AMF_520 633707 - 632913 - | hypothetical protein TERM 308 633502 - 633544 + g 76 -11.3 -3.29144 | gap 1 TTGGCAGAAGCTATT GCCGCCC-TCAACCTTGGGT TCAG ATCCGGGGTTGGCGGGCCGC TTCTAGCAGCAATGA gatA 635505 - 634036 - | glutamyl-tRNA amidotransferase chain A (gatA) TERM 309 635275 - 635265 - G 73 -3.2 -5.00616 | CCTTGGTGCAAAAAA GGTC CTT AACC CCCACCGGTATACCA TERM 310 635538 - 635522 - H 70 -4.4 -4.66264 | opp_overlap 635529, overlap 635512 CAAAACGGTCAAAAA TCCACC GGCGT GATGGA GGTTATCACACTTTG TERM 311 637006 - 637032 + G 71 -5.8 -4.3467 | GGAAAATTCTCAGCA TTGGGGATTCTG GCC CAGAGCCCACAA TTTTGGTGTGCGGGT folC 635727 - 637094 + | folylpolyglutamate synthase (folC) hemC 637252 - 638163 + | porphobilinogen deaminase (hemC) TERM 312 638482 - 638494 + G 86 -5.5 -5.252 | CCAAGAGAGTGGAAT CTCGG GAC TCGAG TTTTTTGTAGGCATA TERM 313 638684 - 638694 + G 73 -5.4 -4.65747 | GGCAAATGGATTTTC GTTG ATG CAAC TTTTGTTGGGGCTTG murB 638138 - 639037 + | UDP-N-acetylenolpyruvoylglucosamine reductase (murB) TERM 314 642238 - 642204 - g 80 -2.7 -5.22006 | gap 1 TGATGATAACAAAAA CAGGGGTACTGGG-CC TTCG GGTCCCGGTAGCACCG GCAGTCCATCGCAGG ankA 639319 - 643485 + | ankyrin (ankA) TERM 315 643544 - 643560 + T 86 -15.1 -2.90813 | overlap 643541 GAAACTTGAATCGCC GGCGCCC AGG GGGCGCC TCATTTCCCCGGATA TERM 316 643892 - 643849 - T 75 -10.2 -3.35992 | opp_overlap 643849, overlap 643850 ACCCAGCCCAACCAA TGCCACCACCTCTGCACCGT CACT ACCCAGCAGAGGTGGTAGCC TTGGTGGCGGTGCCC TERM 317 643891 - 643850 - T 78 -13.7 -2.61274 | opp_overlap 643849, overlap 643849 CCCAGCCCAACCAAT GCCACCACCTCTGCACCGT CACT ACCCAGCAGAGGTGGTAGC CTTGGTGGCGGTGCC nuoI 644772 - 644290 - | NADH dehydrogenase I chain I (nuoI) TERM 318 644350 - 644362 + g 83 -5.5 -5.14682 | opp_overlap 644346 TTCCCAAACATCCCC GTTGC AGA GCAGC TTTTCTTTGTTGTAC lepB 645507 - 644788 - | signal peptidase I (lepB) TERM 319 644984 - 644972 - G 75 -9.1 -3.81853 | opp_overlap 644973, overlap 644970 CCCAACACGAAAATA TGCCC CTG GGGCA CTACGTAAACTGGAG AMF_529 645958 - 645518 - | hypothetical protein TERM 320 655717 - 655697 - g 73 -11.1 -2.95521 | overlap 655692 GTTATAGCAACCATA GCCGATGCA CTG CGCACCGGC CGGATAGACCCAGTG TERM 321 656767 - 656754 - g 79 -8.1 -4.37211 | CAAAGGGAGAAGAAA GCCAC CGTG GTGGC GCTTCAGAAACTGTT AMF_530 646526 - 657007 + | hypothetical protein AMF_531 657686 - 657399 - | hypothetical protein AMF_532 658645 - 658268 - | ORF X TERM 322 659959 - 659945 - H 86 -5.7 -5.08601 | GGATCTTAAGAAAAA GCTAG AAGAA CTAGC AGCGATAAGGGAAGC AMF_535 661703 - 661936 + | ORF Y AMF_536 662003 - 662401 + | ORF X typA 665542 - 663683 - | GTP-binding protein TypA (typA) clpA 667942 - 665597 - | ATP-dependent clp protease ATP-binding subunit (clpA) terC 668046 - 668759 + | membrane protein (TerC) TERM 323 668849 - 668837 - T 70 -10.5 -2.94062 | overlap 668832 TACATCAAGATCACA GCCCG CCA CGGGC CCCGGCAACGAAACA rbfA 669321 - 668968 - | ribosome-binding factor A (rbfA) infB 671816 - 669318 - | translation initiation factor IF-2 (infB) nusA 673379 - 671832 - | transcription termination factor nusA (nusA) acrD 677004 - 673891 - | acriflavin resistance protein D (acrD) TERM 324 674359 - 674338 - G 74 -4.3 -4.82901 | CGTGGCGGATAAAAA CACCGCGGT CATC ACCACTGCG ACGTAGTAGAAGCTG tatC 678016 - 677234 - | Sec-independent protein translocase protein tatC (tatC) TERM 325 677742 - 677732 - G 89 -2.4 -5.72207 | GGGAAATGAAAAAAA CAGC GCA GCAG TTGCCCCTACTTTCA TERM 326 677785 - 677771 - G 91 -5.6 -5.4492 | opp_overlap 677771 CACATACACAAAAAA GGCTTC GGT GAGGCC TGTGTAGATCAGAGA gcpE 679406 - 678114 - | peptidoglycan acetylation protein (gcpE) AMF_547 680786 - 679410 - | hypothetical protein TERM 327 679741 - 679754 + g 91 -5.2 -5.46698 | CCATCTGATTTTCTT GCGG GAAGAG CCGC TTTTTTGCTTTTGGA TERM 328 680482 - 680466 - G 70 -11.5 -2.5001 | overlap 680452 680456 680455 680465 AGAACGGCCACTAAC GGGCCCC TCA GAGGCCC CCTTGCCCCCAGTGC dxr 682074 - 680884 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase (dxr) TERM 329 681551 - 681535 - G 82 -7.2 -4.62069 | GGTCCATCGCAAAAA CGGCCC TCCAG AGGCCG TCAACGTAACCCTAG nuoN1 683533 - 682088 - | NADH dehydrogenase I, N chain (nuoN1) TERM 330 682406 - 682382 - G 84 -4.3 -5.26918 | overlap 682385 AGATTTGAGAAAAAA GTATTTGGG CCAACAT CCCAAAAAC GGCGGAAACCCGGCA nuoM 684999 - 683536 - | NADH dehydrogenase I chain M (nuoM) TERM 331 684109 - 684119 + g 71 -5.4 -4.44284 | opp_overlap 684109 684107, overlap 684112 AGCAACGGAGGAATA TGCT ATG AGCA TTTTCATATTGCGTT nuoL 686897 - 684996 - | NADH dehydrogenase I chain L (nuoL) TERM 332 685513 - 685476 - G 71 -5.5 -4.52047 | overlap 685478 CACCACACCAGAAAA TACCGCCCCAACTGCTA GTAT CAGCAGCGGGAACAGCA TAATGCTACTGGATT nuoK 687291 - 686965 - | NADH dehydrogenase I chain K (nuoK) nuoJ 687942 - 687340 - | NADH dehydrogenase I chain J (nuoJ) TERM 333 687758 - 687744 - G 76 -3.4 -5.08731 | CAACAAACAAGAAAA GTACGG CAA CCGCCC CTACGTACACTATGA nuoF 689423 - 688131 - | NADH dehydrogenase I chain F (nuoF) TERM 334 688602 - 688616 + g 83 -5.6 -5.1485 | opp_overlap 688604, overlap 688604 ATCCCAACCACCAAT AACGCC ACC GGCGTA TTTTTCTATTAATTC TERM 335 688614 - 688604 - G 70 -8.2 -3.77722 | opp_overlap 688602 688604 CCCAACCACCAATAA CGCC ACC GGCG TATTTTTCTATTAAT TERM 336 688604 - 688614 + g 76 -8.2 -4.18115 | opp_overlap 688604, overlap 688602 CCCAACCACCAATAA CGCC ACC GGCG TATTTTTCTATTAAT fadB 690665 - 689502 - | 3-hydroxyacyl-COA dehydrogenase bO272.3 (fadB) TERM 337 690360 - 690378 + g 77 -11 -3.40403 | GTTGTCTGGAGCCAC GGCGGAGT AAA ACTTCGCC TTCTCATCCACCCCA AMF_557 691111 - 690671 - | hypothetical protein TERM 338 691254 - 691232 - H 70 -3.4 -4.77438 | overlap 691237 691238 ATTGATTATCAAAAA CATAACCCTA CTT TAGGAATACG CGTGGTAAAGTACAT miaA 691311 - 692228 + | tRNA isopentenylpyrophosphate transferase (miaA) AMF_560 693029 - 692274 - | hypothetical protein AMF_561 694542 - 693193 - | hypothetical protein TERM 339 694665 - 694642 - g 76 -3.1 -5.15634 | opp_overlap 694663 GAGCTTATTAAAAAA GACCCTG AGCTGTTTGA CAGGGCC ATGATATCCCGTGGC TERM 340 695883 - 695870 - g 70 -8.1 -3.67112 | AGTACACCGGAACAA GCGCA ATAA TGCGC GCAGAAGATGCCCTG serS 694591 - 695904 + | seryl-tRNA synthetase (serS) AMF_563 696624 - 696079 - | hypothetical protein TERM 341 696897 - 696887 - R 71 -6.8 -4.26344 | ATACCGTTAGGAAAA CCCA TAC TGGG CCTGGCCTATTCCCA hemF 697782 - 696904 - | coproporphyrinogen III oxidase (hemF) agk 698932 - 697952 - | acetylglutamate kinase (agk) TERM 342 698329 - 698314 - GR 70 -10.4 -2.96216 | TGGTACCACTACACA CCGGTG ATAT CACCGG AACAAAGTCTGACTC TERM 343 698723 - 698747 + gr 77 -12.9 -2.84841 | opp_overlap 698729, overlap 698720 698729 TAACACCACATCGCT CGCAAACCTCG CAG CAAGGTTTGCG TCCTTCATTGCGGTT engB 699494 - 698877 - | Probable GTP-binding protein engB TERM 344 700634 - 700618 - g 73 -2.9 -4.91511 | overlap 700621 ATCCCAGCACAAAAA CAAGAGC AAG GCTCTAA AAGTTCTGAGGGCAA TERM 345 700631 - 700621 - g 76 -6.8 -4.56153 | overlap 700618 CCAGCACAAAAACAA GAGC AAG GCTC TAAAAGTTCTGAGGG prfA 699821 - 700900 + | peptide chain release factor 1 (prfA) pccB 702685 - 701138 - | propionyl-COA carboxylase beta chain precursor (pccB) fpg 703809 - 702931 - | formamidopyrimidine-DNA glycosylase (fpg) TERM 346 703102 - 703079 - G 79 -6.6 -4.61566 | opp_overlap 703092 703093 TGGTAAACCATAAAA TGCTGCTGGA ACCC TCCCGCGGCA CCAGTGGGAATTTTA TERM 347 703770 - 703786 + g 80 -2.3 -5.46698 | overlap 703762 703781 CTGGTAGTTCTGGCA TCTTC AACGCCG GAAGA TTTTTTCCTTTTACG TERM 348 703945 - 703925 - RH 80 -9.7 -4.11394 | opp_overlap 703942 AGTTTAGTGGTAAAA CGCGTCCTT GGT AAGGACGAG CCTCAAGTTCGATTC AMF_571 705333 - 703981 - | hypothetical protein TERM 349 705160 - 705124 - GH 79 -8.7 -4.22883 | TATCACTGAAAATAA CACTGCAGCTACGCCAG CCA CTGCTACAGCTGCAATG ATGGGTGGACAACAT TERM 350 705213 - 705176 - GH 75 -12.9 -2.52742 | gap 1, overlap 705175 705173 ATGGGTGGACAACAT GCTGCTACTGTACACAAC ATT ATTGTGCACAGC-GCAGC TACGGTGCAGACCAT gltX2 705236 - 706819 + | glutamyl-tRNA synthetase (gltX2) AMF_573 706824 - 707078 + | hypothetical protein TERM 351 707471 - 707440 - T 73 -9.2 -3.70853 | opp_overlap 707439 707440 CTAATCAGGTAACAA CCCCGCCAGCAAAG TAAG CGCAGCAGGCGGGG ATTTGCTTCTTCCGA AMF_574 709093 - 707498 - | hypothetical protein AMF_575 711120 - 709528 - | hypothetical protein AMF_576 712989 - 711148 - | hypothetical protein AMF_577 714209 - 712953 - | hypothetical protein petC 715256 - 714495 - | cytochrome c1, heme protein precursor petB 716477 - 715257 - | cytochrome B (petB) TERM 352 715476 - 715489 + g 86 -8.1 -4.60487 | opp_overlap 715475 GACCTTGAAAATAGG GCGGT ACTT ACCGC TTTTTACAGGTGATC TERM 353 715540 - 715527 - G 76 -3.1 -5.12068 | overlap 715532 GACAGGCAACAAAAA CCACA CCGC TATGG AGCCGAACATGGTCA TERM 354 716100 - 716115 + g 74 -4.6 -4.82901 | opp_overlap 716100 716098 716102, overlap 716102 GATGCCAAAAAACCA GACCAG CTCC CTGGGC TTTTTATACGAACCA petA 716788 - 716489 - | cytochrome B6-F complex iron-sulfur subunit (petA) petA 717137 - 716772 - | cytochrome B6-F complex iron-sulfur subunit (petA) AMF_583 718099 - 717323 - | hypothetical protein znuB 719165 - 718362 - | zinc ABC transporter, permease protein (znuB) TERM 355 718437 - 718413 - G 79 -7.1 -4.6709 | TAAAAGCATAGAAAA GGAGGCAACGA TAA TCATTGGCCCC GGGAATGTGTCAAAC AMF_585 719524 - 719171 - | hypothetical protein tsf 720421 - 719546 - | translation elongation factor EF-Ts (tsf) TERM 356 720193 - 720183 - G 74 -6.8 -4.37886 | overlap 720185 TTACGCGCGACAAAA TCGG TCT CCGA ACCCAGCTTCAGTAT rpsB 721554 - 720457 - | 30S ribosomal protein S2 (rpsB) maf 722179 - 721589 - | maf protein (maf) infA 722508 - 722173 - | translation initiation factor IF-1 (infA) hlyD 723620 - 722505 - | putative secretion protein hlyD TERM 357 723016 - 723001 - GR 76 -6.8 -4.43844 | overlap 723002 CCACCACTGATAAAA CTCCCC TCTT GGGGAA CAATCTTGCCAACTA TERM 358 723478 - 723454 - GR 74 -12.1 -2.85351 | CTGCCCGAGATGACA TCACGCCCGGT CGT ACCGGGTGCGA CCAATCCACTCATAA lpdA 725001 - 723586 - | dihydrolipoamide dehydrogenase (lpdA) AMF_592 726178 - 725009 - | hypothetical protein TERM 359 725551 - 725567 + g 72 -3.7 -4.84359 | opp_overlap 725551 TGCCATCAGGCAGAA GCATG ACGATTA CATGC TTTTTGTGAGAGTAG TERM 360 726080 - 726060 - G 82 -7.5 -4.64676 | TCAGGCGCAATAAAA GACGTGGAG AGA CCCCAAGTC CGCTCAGAAACAGCT TERM 361 726210 - 726200 - H 73 -5.4 -4.69324 | ACAACAAATAATAAA GAAC CGT GTTC ATAATCTGACAACTT TERM 362 727236 - 727218 - g 86 -9 -4.59081 | GAAAGTCACAGAAAA TATGGAAA AAC TTTCCATA AAATCGGCCACGGAT engA 726499 - 727815 + | GTP-binding protein (engA) yibO 729500 - 727923 - | 2,3-bisphosphoglycerate-independent phosphoglycerol mutase (yibO) TERM 363 728808 - 728820 + g 74 -7.7 -4.23054 | overlap 728792 728797 CCGCGCCAGAGCGAT GGCTT CAT AAGCC TTTTCGGTCCTGTCT TERM 364 728920 - 728931 + g 70 -2.2 -5.00616 | gap 1, opp_overlap 728920 ACAGCGTCGTTCAAA GC-CG TTA CGTGC TTTTTTGCCGAACGA TERM 365 729853 - 729877 + G 85 -3.5 -5.37593 | opp_overlap 729852 729848, overlap 729845 TATACCATAACTGAC CCGTCATTTGC CGG GCAGATAGTGG TTTTTTCCTTTCCGC carA 729592 - 730809 + | carbamoyl-phosphate synthase, small chain (carA) TERM 366 731030 - 731013 - g 82 -6.9 -4.77165 | GGCTGTACAACAAAA CCACAGC GTGT GCCGCGG CTATTGCGGGGTCAT lytB 730993 - 732021 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (lytB) TERM 367 732632 - 732620 - g 70 -9.1 -3.52341 | AGGTGAACAGCATAA CGGCT ACC AGCCG CGGAGAGGGGGGGTT dut 732223 - 732666 + | deoxyuridine 5'triphosphate nucleotidohydrolase (dut) murF 734143 - 732713 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) TERM 368 734249 - 734239 - H 70 -8.2 -3.7108 | overlap 734240 ACTGGCACAGTTAAA GCGC GCC GCGC ACTCCCTACACGCCA TERM 369 734505 - 734530 + G 74 -4.1 -4.96848 | gap 1, opp_overlap 734494, overlap 734505 734506 734509 ACAACACCGCATCCA G-TGATCAGTGC AGT GCATTGATTAGC TTTTTCTATGCACAC AMF_601 734327 - 734944 + | hypothetical protein AMF_602 740241 - 734959 - | hypothetical protein TERM 370 736040 - 736062 + gT 71 -7.7 -3.9712 | TCAGACATAGCCCCA GCCGCTATA CCCTC TACAGCGGC TTTCTCATCACCTGC AMF_603 744334 - 740204 - | hypothetical protein TERM 371 742854 - 742864 + gr 71 -6.8 -4.16943 | opp_overlap 742853 GCGGTCGCGTAACAC GTCC TGT GGAC TTTTAGCGTATAAAA TERM 372 743149 - 743165 + gr 73 -8.7 -3.727 | overlap 743143 CAGCGAGCTCGTAAG CGGCGTT TTT AACGTCG TTTACATCTGCTGGC AMF_604 747411 - 744346 - | hypothetical protein TERM 373 744812 - 744802 - G 74 -6.8 -4.31433 | opp_overlap 744810 CATTGGTAGAAGAAA GCGT AGC ACGC ACAAAGTGGCGATTT TERM 374 746109 - 746122 + g 74 -2.3 -5.10933 | GCGATGTGATCGTAT CACCG CTTT CGGTC TTTTGTTTTGAATCG virB6 750145 - 747464 - | VirB6 virB4 752495 - 750087 - | VirB4 TERM 375 752111 - 752132 + gr 79 -7.3 -4.57073 | opp_overlap 752115 TGTATAGCTCGTTTG CAAATGACG GCTT CGTCATGTG TTTTTCGCGCCACTG virB3 752816 - 752499 - | VirB3 sodB 753560 - 752889 - | Fe superoxide dismutase (sodB) pstA 753646 - 755109 + | phosphate ABC transporter (pstA) lipA 756273 - 755332 - | lipoic acid synthetase (lipA) AMF_612 758578 - 756956 - | hypothetical protein AMF_613 762764 - 758685 - | hypothetical protein TERM 376 759612 - 759626 + g 87 -7.8 -5.02074 | TCGGCTGACATTTCC GCGCTC CAA GAGTGC TTTTTTCCAAGCTCG TERM 377 760341 - 760330 - G 71 -5.8 -4.34402 | TCGGGTATATCAAAA GCGT TTGT ACGC TCCACGTTCCCGTGC TERM 378 761259 - 761241 - G 85 -7.4 -4.86033 | opp_overlap 761241 AAACTCGCACAAAAA GTCACACA ACC TGTGAGAC TTTAAATGCCGGAAA pycA 764845 - 762857 - | propionyl-CoA carboxylase alpha chain precursor (pycA) rluD 765233 - 766198 + | Ribosomal large subunit pseudouridine synthase D (rluD) rpmB 766605 - 766201 - | 50S ribosomal protein L28 (rpmB) TERM 379 767010 - 766993 - R 83 -5.5 -5.19212 | overlap 766982 766979 AGGAGCACCAAAAAA TGGGCGC TCGG ACACCCA ACAGCATCAAAAAGC priA 769097 - 767109 - | primosomal protein N' (priA) AMF_619 770238 - 769315 - | hypothetical protein TERM 380 769384 - 769400 + g 84 -2.1 -5.61596 | overlap 769377 TATACCAAGGTCAAC CGCGCGG TGC TTGCCCG TTTTTTTGTCAGCAT hemD 771077 - 770364 - | HemD TERM 381 771222 - 771208 - R 76 -2.8 -5.09685 | overlap 771196 GAACATACACAAAAA TTGTGC ACG GGACAA CCCTGATGTCATTCC TERM 382 771257 - 771284 + r 72 -8.4 -3.86194 | opp_overlap 771248 771253 771264 CGCAAAGAGCACGCT CAGCATACTCAC AGTG GTGAGCAGGCTG TTTGTAGCCAAGCTT AMF_622 772977 - 771265 - | hypothetical protein TERM 383 771726 - 771738 + g 77 -9.1 -4.09864 | opp_overlap 771716 AAACCGCTCTTGCCA GGGCA ATA TGCCC TTTTAGCACGTCAGT TERM 384 771865 - 771878 + g 70 -3.1 -4.76088 | gap 1 ATACAGCCCCCCTTC GCGCAG TAC CTG-GC TTGTTTTTTCGTTTA AMF_623 773631 - 773104 - | hypothetical protein AMF_624 774878 - 774018 - | hypothetical protein era 775747 - 774854 - | GTP-binding protein ERA (era) TERM 385 774905 - 774934 + g 73 -2.9 -5.00884 | ATCCTGCCAGAATTT GCGCACCTT AACAAACAAAAA AAGGTGTGC TTTTTTACCCAGAAT ffh 777197 - 775842 - | signal recognition particle protein (ffh) TERM 386 776787 - 776807 + g 78 -2.5 -5.30686 | CGCCGGTCTGTATAC GTCTAGG GACGCAA CCAAGAC TTTTTTCTCACTCTT nuoL3 778752 - 777190 - | NADH dehydrogenase I chain N (nuoL3) TERM 387 777434 - 777444 + g 71 -6.8 -4.15044 | ATGCTGAACTCGCAT CTGC CTA GCAG TTTGTTGCGCAACGA TERM 388 777886 - 777873 - G 73 -5.2 -4.59993 | AAATCGACAAATAAA CGGC ATACAG GCCG CCCCTTCTGTGCTCC TERM 389 778165 - 778150 - G 73 -6.2 -4.4891 | TGGATCACCAGAAAA CATTCT CAGC AGAATG CAGGCGGCAACTTTA TERM 390 778640 - 778617 - G 74 -2.4 -5.07941 | gap 1, overlap 778618 AAAACGACAGAAAAA GCGGCATTGCA GAG TGCAAAAC-GC GTGACAGCTCGAGCC AMF_629 779291 - 778815 - | hypothetical protein dnaK 781455 - 779518 - | DNAK protein rne 783514 - 781655 - | ribonuclease E (rne) AMF_633 783935 - 783609 - | hypothetical protein AMF_634 784499 - 784023 - | hypothetical protein TERM 391 784175 - 784152 - GR 78 -3.8 -5.09173 | overlap 784155 GAACATTGCAAAAAA GTAGGAAAGA AAAC TCTTTCCGGC AATCATGGATATGGC AMF_635 785025 - 784456 - | hypothetical protein AMF_636 785325 - 785026 - | hypothetical protein TERM 392 785186 - 785156 - G 76 -5.4 -4.77986 | overlap 785146 785157 785158 GTAAATACGGAAAAA CCGCACTGCATGGT TAA ACCACACAGCACAA GCGCTACCCCGACGG AMF_637 785586 - 785332 - | hypothetical protein tktA 787589 - 785604 - | transketolase (TktA) AMF_639 789209 - 787605 - | Thermostable carboxypeptidase 1 (M32) TERM 393 787967 - 787986 + g 70 -4.2 -4.62669 | overlap 787971 AGGCATCCGGCAACT CGCTGACT TTCA AGTCGTCG TTTATTATTTCCTTC TERM 394 789579 - 789561 - g 70 -8.1 -3.65699 | GGTAGAAAGAATGAA GGCGGAC AAGAG GTCCACC CTGCTGATTATCGGC pal 789298 - 790065 + | Peptidoglycan-associated lipoprotein precursor TERM 395 791523 - 791510 - g 86 -8.1 -4.61199 | opp_overlap 791510 ATCCCACATACAAAA CAGGC TTGA GCCTG TATATGAAACCTTAC purA 790359 - 791696 + | adenylosuccinate synthetase (purA) hflX 792686 - 791700 - | putative GTP binding protein (hflX) yqgF 793218 - 792724 - | Putative Holliday junction resolvase (YqgF) TERM 396 792938 - 792923 - G 71 -6 -4.37092 | overlap 792925 AGCTTTTGCACAAAA GAGCGG ACCA CCGCGC ACATCTCTCCCTCCA nrdA 795083 - 793263 - | ribonuclease-diphosphate reductase alpha chain (nrdA) TERM 397 793554 - 793565 + g 70 -4.4 -4.60041 | CATCTCGTAAGCGGT CTTG AAAA CAAG TTTTTCCCGCTCAGT TERM 398 795186 - 795173 - H 74 -4.5 -4.84914 | ACTCACACAACAAAA GGGAC AAAG ATCCC CGCCATCGGTAACCA ispA 795651 - 796526 + | geranyltranstransferase (farnesyl-diphosphate synthase)(ispA) AMF_646 796523 - 797470 + | hypothetical protein thiO 798633 - 797500 - | thiamine biosynthesis oxidoreductase (thiO) TERM 399 798076 - 798063 - G 70 -3.1 -4.85177 | gap 1, overlap 798064 798065 AAACCATATCAAAAA CGTGCC GCT GGCA-G CCCACCACCAACGTT TERM 400 798556 - 798546 - G 70 -4.6 -4.72986 | CATCCCGATCAAAAA GCGA GAC CCGC CACCCATTTTGCAGT dnaB 800247 - 798769 - | replicative DNA helicase (dnaB) TERM 401 799266 - 799245 - G 70 -3 -4.8667 | GATAGTCCACAAAAA CAACTCCA ATATTG TGAAGCTG GTGCATTCTTCTTAT TERM 402 799662 - 799685 + g 100 -3.8 -6.11243 | gap 1, overlap 799666 CTCCTTGTAGGGCAT TTGCA-CCGCC TTT GGCGGCTTCGA TTTTTTTTCTTACGT AMF_649 800972 - 800298 - | hypothetical protein TERM 403 801472 - 801484 + G 74 -4.7 -4.87318 | TGCGGGGGAGTAGAG CACGG CGC CCGAG TTTTTAGGTTTTGCC ssnA 801136 - 801600 + | cytosine deaminase (ssnA) fabH 802701 - 801730 - | 3-oxoacyl-[acyl-carrier-protein] synthase III (fabH) plsX 803741 - 802698 - | fatty acid/phospholipid synthesis protein (plsX) TERM 404 803318 - 803299 - G 90 -9.3 -4.65916 | TCTAGTGCAACAAAA CTGCCCT TCCTGG AGGGCAG TACAGTAGCAATAGC rpmF 803917 - 803741 - | large subunit ribosomal protein L32 (rpmF) TERM 405 804208 - 804223 + G 75 -10.4 -3.48276 | overlap 804214 CGTCGGTGTAATCTC CACCCC CCAT GGGGTG TTGTATACCCCAGCG tgt 804131 - 805393 + | Queuine tRNA-ribosyltransferase (tgt) pstB 806412 - 805588 - | phosphate ABC transporter (pstB) TERM 406 805703 - 805690 - GT 73 -3.1 -5.00616 | gap 1 GCCCTCTTGAAAAAA CGCGAC CCT GTC-CG AAACTTCTCGTACCT TERM 407 806022 - 806032 + gT 74 -4 -5.03994 | overlap 806013 CATGCAGCTTAGGCC CATA AGC TATG TTTTTGTATATCGAG dapB 807296 - 806352 - | dihydrodipicolinate reductase (dapB) TERM 408 806644 - 806663 + gr 80 -4.2 -5.14477 | TTACCCAGCATTAGC GATGTTCC AGAG GGCGCATC TTTTTTCGCTCTATG TERM 409 806801 - 806786 - GR 76 -6.8 -4.4891 | TGCACGACCATAAAA GCGGAA CCTT CTCCGC ATGCGTGCGAAAATC AMF_657 807792 - 807307 - | hypothetical protein ubiA 808734 - 807805 - | 4-hydroxybenzoate octaprenyltransferase (ubiA) TERM 410 808444 - 808456 + g 73 -9.1 -3.77209 | AAGGGGCCTGTTTTT GGTCC TCC GGACC TTTGCATCTATCTTT TERM 411 808827 - 808802 - R 95 -11.9 -4.23045 | overlap 808805 808816 CAAGCATCCAAGAAA CCACGCTACAC AGAC GTGTAGCGTTG CAACACAAAATTGAC TERM 412 808824 - 808805 - R 77 -12.2 -3.11702 | overlap 808802 808816 GCATCCAAGAAACCA CGCTACAC AGAC GTGTAGCG TTGCAACACAAAATT TERM 413 808872 - 808850 - R 70 -9.8 -3.20462 | opp_overlap 808853, overlap 808848 808847 AAATTGACAAAACTA GAGGAGAGGA GGA TCCCCCCCCC CTTCCATTGAGCACT aaap 809860 - 808886 - | Appendage-associated protein TERM 414 809164 - 809175 + g 74 -4.4 -4.78077 | overlap 809164 CGGCAAGTTCTGCTT TTGC TTGA GCAA TTTCTTTTGCTTGGG TERM 415 809978 - 809953 - R 95 -11.9 -4.42619 | overlap 809956 809967 GAATATTTCAGAAAA CCACGCTACAC AGAC GTGTAGCGTTG CAACACAAAATTGAC TERM 416 809975 - 809956 - R 77 -12.2 -3.18044 | overlap 809953 809967 TATTTCAGAAAACCA CGCTACAC AGAC GTGTAGCG TTGCAACACAAAATT TERM 417 810023 - 810001 - R 70 -9.8 -3.20462 | opp_overlap 810001, overlap 809999 809998 AAATTGACAAAACTA GAGGAGAGGA GGA TCCCCCCCCC TTCCATTGAGCACTA alp1 811622 - 810036 - | Appendage-associated protein-like protein 1 (alp1) TERM 418 811705 - 811680 - R 95 -11.9 -4.23045 | overlap 811683 811694 CAAGCATCCAAGAAA CCACGCTACAC AGAC GTGTAGCGTTG CAACACAAAATTGAC TERM 419 811702 - 811683 - R 77 -12.2 -3.11702 | overlap 811680 811694 GCATCCAAGAAACCA CGCTACAC AGAC GTGTAGCG TTGCAACACAAAATT alp2 812697 - 811762 - | Appendage-associated protein-like protein (alp2) TERM 420 812580 - 812527 - G 100 -19 -3.50853 | gap 2, opp_overlap 812527, overlap 812498 CCCTCCCAAGCATAA GAGGGACGCGCGAGCAGCAGCGGCAA GTTC TTGCCGCTGCTGC-CGGTC-TCCCCC TCCATTACAGGAATC TERM 421 812527 - 812580 + g 100 -19 -2.52676 | gap 2, opp_overlap 812498 812527 CCCTCCCAAGCATAA GAGGGACGCGCGAGCAGCAGCGGCAA GTTC TTGCCGCTGCTGC-CG-GTCTCCCCC TCCATTACAGGAATC TERM 422 812815 - 812790 - R 95 -11.9 -4.42619 | overlap 812793 812804 GAATATTTCAGAAAA CCACGCTACAC AGAC GTGTAGCGTTG CAACACAAAATTGAC TERM 423 812812 - 812793 - R 77 -12.2 -3.18044 | overlap 812790 812804 TATTTCAGAAAACCA CGCTACAC AGAC GTGTAGCG TTGCAACACAAAATT TERM 424 812862 - 812838 - R 70 -9.9 -3.20462 | opp_overlap 812840, overlap 812836 812835 812840 AAATTGACAAAACTA GAGGAGAGGAG GAT CCCCCCCCCCC TTCCATTGAGCACTA TERM 425 812862 - 812840 - R 74 -11.2 -3.14989 | opp_overlap 812840, overlap 812838 812836 812835 ATTGACAAAACTAGA GGAGAGGAGG ATC CCCCCCCCCC TTCCATTGAGCACTA aaap 813849 - 812875 - | Appendage-associated protein TERM 426 813153 - 813164 + g 74 -4.4 -4.78077 | overlap 813153 CGGCAAGTTCTGCTT TTGC TTGA GCAA TTTCTTTTGCTTGGG TERM 427 813967 - 813942 - R 95 -11.9 -4.42619 | overlap 813945 813956 GAATATTTCAGAAAA CCACGCTACAC AGAC GTGTAGCGTTG CAACACAAAATTGAC TERM 428 813964 - 813945 - R 77 -12.2 -3.18044 | overlap 813942 813956 TATTTCAGAAAACCA CGCTACAC AGAC GTGTAGCG TTGCAACACAAAATT TERM 429 814012 - 813990 - R 70 -9.8 -3.20462 | opp_overlap 813990, overlap 813988 813987 AAATTGACAAAACTA GAGGAGAGGA GGA TCCCCCCCCC TTCCATTGAGCACTA alp3 814546 - 814025 - | Appendage-associated protein-like protein 3 rpmH 814751 - 814885 + | large ribosome subunit L34 (rpmH) AMF_665 814825 - 815250 + | hypothetical protein TERM 430 815495 - 815507 + G 70 -10.5 -3.00918 | opp_overlap 815493, overlap 815494 CAATAGCATTAAGTT CCGGG GGG CCCGG CTTTATAGTCTGGAT AMF_667 815263 - 816582 + | hypothetical protein AMF_669 818887 - 816641 - | hypothetical protein TERM 431 816754 - 816741 - G 71 -5.2 -4.58685 | AAACCGTTGCAAAAA GGCG TCGAAT CGCC CGCATTTCTGTTTCT pheT 821532 - 819169 - | phenylalanyl-tRNA synthetase beta chain (pheT) TERM 432 819564 - 819550 - G 74 -3.5 -5.0538 | CCGCATTTCAAAAAA CCCAA TGAGG TCGGG GTGCAGCTCGCCAAC TERM 433 820359 - 820349 - G 82 -6.8 -4.82901 | overlap 820350 CTGCCCTCAGAAAAA GGTG TCT CACC ACACGCCACAACGTC rplQ 821940 - 821536 - | 50S ribosomal protein L17 (rplQ) rpoA 823081 - 821981 - | DNA-directed RNA polymerase alpha chain (rpoA) rpsK 823443 - 823102 - | 30S ribosomal protein S11 (rpsK) rpsM 823857 - 823486 - | 30S ribosomal protein S13 (rpsM) adk 824571 - 823921 - | adenylate kinase (adk) secY 825854 - 824553 - | preprotein translocase secY subunit (secY) TERM 434 824684 - 824671 - G 82 -3.8 -5.33848 | ACGATAATTAAAAAA CTGG TACCGC CCAG AGTGAATGAGACGGC TERM 435 825125 - 825109 - G 73 -5 -4.62069 | opp_overlap 825109 TCGCTATTGTAAAAA CGGCCG CCTGT CTGCCG TTTTGGATACTGCAC TERM 436 825265 - 825233 - G 74 -9.9 -3.56092 | CGACCAGTCCGGAAA CCTCCCCGTTTTTCC CAA GCAAAAACACGGAGG ATATGGAACTTGGTA rplO 826319 - 825867 - | 50S ribosomal protein L15 (rplO) rpsE 826857 - 826333 - | 30S ribosomal protein S5 (rpsE) TERM 437 826822 - 826840 + g 74 -4.4 -4.83615 | opp_overlap 826823 826824, overlap 826823 826824 TGACAAATCATGAGA ATCGTGCG CAG CGCGCGGC TTTTTATCAACACTC rplR 827245 - 826868 - | 50S ribosomal protein L18 (rplR) rplF 827819 - 827247 - | 50S ribosomal protein L6 (rplF) rpsH 828202 - 827804 - | 30S ribosomal protein S8 (rpsH) TERM 438 827937 - 827915 - G 74 -7.7 -4.16279 | GAGACCATTGTAAAA CTTCGGCAG CCTAT CTGCAGAAG AATACACTCTCTTAC rpsN 828468 - 828220 - | small ribosomal protein S14 (rpsN) rplE 829076 - 828537 - | 50S ribosomal protein L5 (rplE) rplX 829319 - 829077 - | 50S ribosomal protein L24 (rplX) rplN 829749 - 829390 - | 50S ribosomal protein L14 (rplN) rpsQ 829995 - 829762 - | 30S ribosomal protein S17 (rpsQ) rpmC 830191 - 829985 - | 50S ribosomal protein L29 (rpmC) rplP 830627 - 830199 - | 50S ribosomal protein L16 (rplP) rpsC 831259 - 830624 - | 30S ribosomal protein S3 (rpsC) rplV 831601 - 831263 - | 50S ribosomal subunit L22 (rplV) rpsS 831886 - 831605 - | 30S ribosomal protein S19 (rpsS) rplB 832725 - 831892 - | 50S ribosomal protein L2 (rplB) rplW 833030 - 832722 - | 50S ribosomal protein L23 (rplW) rplD 833631 - 833005 - | 50S ribosomal protein L4 (rplD) rplC 834347 - 833649 - | 50S ribosomal protein L3 (rplC) rpsJ 834666 - 834349 - | 30S ribosomal protein S10 (rpsJ) TERM 439 834397 - 834383 - G 70 -10 -3.1978 | overlap 834381 ACTTTGACATCAACA CCAGCT GGA AGCTGG AGACTCATGAGGGCC tuf 835875 - 834673 - | translation elongation factor Tu (tuf) TERM 440 836094 - 836084 - H 74 -2.4 -5.17353 | opp_overlap 836084 AGACTTAGCAAAAAA GGCG CCG CCCC TGTAATAGCACATAA trmH 836230 - 837015 + | Putative tRNA/rRNA methyltransferase TrmH cmk 837002 - 837679 + | cytidylate kinase (cmk) TERM 441 837983 - 837995 + G 73 -9.1 -3.66356 | GTCCGAGGGCGTGGT CTCCC TTA GGGAG TTTGAGCTTGGCGAT rpsA 837744 - 839423 + | 30S ribosomal protein S1 (rpsA) TERM 442 840021 - 840035 + G 80 -2.8 -5.27923 | overlap 840018 ATACAAGGAGTGGTG GACG ATTTTCA CGTC TTTTTTGTAGGCTTG sppA 839427 - 840308 + | protease IV (sppA) TERM 443 840378 - 840360 - f 83 -3 -5.4505 | overlap 840361 840362 CGTCGCAAGAAAAAA TCCCTCAC TGG GTGAGGCC GTGGTTTCGCAGATC AMF_703 840557 - 841054 + | hypothetical protein AMF_704 841055 - 841474 + | hypothetical protein AMF_705 841793 - 842746 + | hypothetical protein TERM 444 843629 - 843607 - g 93 -14.2 -3.85864 | GGACGAGTATAATAA GGCTGCCATG GGC CATAGCAGCC CGAGAATATTATTTT hemH 843050 - 844102 + | Ferrochelatase (hemH) AMF_707 845169 - 844105 - | hypothetical protein TERM 445 844233 - 844213 - G 71 -6.1 -4.39568 | overlap 844216 AGCGAGAGAGCAAAA TATGCGCAC CCT GCGCTCATA CAGCTCATCCACCAA AMF_708 845751 - 845425 - | hypothetical protein hflK 847212 - 846289 - | HFLK protein (hflK) AMF_710 848122 - 847274 - | hypothetical protein TERM 446 847832 - 847850 + g 74 -3.8 -4.99035 | ATCACCAGTGGTTTC GCTTCC CTGCACT GGAGGC TTTTTCTCTCCCTCA recB 848220 - 850823 + | Putative exodeoxyribonuclease V beta chain qor 852131 - 851148 - | quinone oxidoreductase (qor) aprD 854639 - 852237 - | Alkaline protease secretion ATP-binding protein (aprD) TERM 447 852495 - 852512 + g 70 -9.1 -3.52455 | overlap 852497 AGAGACACTTTCAGC GCTGCTG CGTT CAGCGGC ATTTTTCGTATTACT TERM 448 852497 - 852513 + g 78 -5.8 -4.89233 | overlap 852495 AGACACTTTCAGCGC TGCTGC GTTCA GCGGCA TTTTTCGTATTACTA TERM 449 852666 - 852680 + g 76 -3.4 -5.0916 | opp_overlap 852666 CACACTTGCAACCGA GGAGGT GCC GCCCCC TTTTTCTATTGGGCC TERM 450 855076 - 855061 - g 70 -8.2 -3.76373 | TCTTCAATAGCGAAA GCGCGG TCGG CCACGC TGCAAGGTTAATAGC folP 854904 - 855779 + | dihydropteroate synthase (folP) TERM 451 856134 - 856120 - f 76 -7.1 -4.46404 | GAACCAACACCAAAA GCGCA GCCAA TGCGC AGGAAAAGTTACGCC TERM 452 859330 - 859316 - g 73 -5.6 -4.63218 | TCCGCGGGAATAAAA GCAGTC TCG GACAGC GCGGATATCAGGAGA carB 856238 - 859543 + | carbamyl-phosphate synthase, large subunit (carB) TERM 453 860532 - 860522 - T 70 -3.2 -4.78345 | AATAAATAAAAAGAA GGAT CAC ACCC AGAAGCACAGCACCA AMF_717 861159 - 860767 - | hypothetical protein fumC 862712 - 861324 - | fumarate hydratase (fumC) TERM 454 862153 - 862165 + g 76 -5.5 -4.86133 | overlap 862151 862154 ACTGCATCCTGGAGG TGGGT GCG ACCCG TTTTTACTATGTCTG dfp 862882 - 863532 + | phosphopantothenoylcysteine synthase/decarboxylase (dfp) pyrC 863533 - 864897 + | dihydroorotase glmM 866386 - 865028 - | phosphoglucosamine mutase (glmM/femD) TERM 455 865740 - 865751 + g 71 -5.8 -4.32857 | opp_overlap 865740 865739 TCAGGATGTAAAGAC CCAC AATT GTGG TTTATGTTTAGCCCA lipB 867067 - 866423 - | lipoate-protein ligase B (lipB) radC 867850 - 867158 - | DNA repair protein (radC) groES 868033 - 868356 + | 10 KD chaperonin (groES) groEL 868404 - 870053 + | 60 kD chaperonin (groEL) AMF_726 871399 - 870668 - | hypothetical protein TERM 456 872936 - 872925 - g 95 -2.2 -5.85011 | GAAAAACGAAAAAAA CGAG GCGT CTCA GCAGCGTCTTGCGGT clpB 871591 - 874239 + | ATP-dependent clp protease ATP-binding subunit (clpB) TERM 457 874401 - 874367 - T 77 -11.5 -3.37975 | gap 1, opp_overlap 874397, overlap 874368 AGCGACCATGTAGAA CGCCGGCACCCACACA ATCA TGTATGGACGCCG-CG CTGCCGATTCTGATA TERM 458 874402 - 874368 - T 70 -11.5 -2.62463 | gap 1, opp_overlap 874397, overlap 874367 GCGACCATGTAGAAC GC-CGGCACCCACACA ATCA TGTATGGACGCCGCGC TGCCGATTCTGATAT AMF_729 876011 - 874350 - | hypothetical protein TERM 459 874437 - 874447 + g 71 -6.8 -4.17516 | ATTCGCGTGTGCAAT CCGA GGG TCGG TTTCTCTACTTTCGG AMF_730 877234 - 876242 - | hypothetical protein pcxB 878154 - 877339 - | Protocatechuate 3,4-dioxygenase (pcxB) AMF_1056 878283 - 878681 + | hypothetical protein TERM 460 879106 - 879089 - gf 82 -6.9 -4.788 | opp_overlap 879104 AAATCAAGGCAAAAA GCGCTAC AGTA GTCGCGC CCGGTGGTTCAGAGC pepA 878653 - 880257 + | Leucyl aminopeptidase (pepA) purN 880273 - 880917 + | Phosphoribosylglycinamide formyl transferase (purN) AMF_735 882707 - 881052 - | hypothetical protein TERM 461 882477 - 882441 - G 79 -8.7 -4.22883 | TATCACTGAAAATAA CACTGCAGCTACGCCAG CCA CTGCTACAGCTGCAATG ATGGGTGGACAACAT TERM 462 882530 - 882493 - G 75 -12.9 -2.52742 | gap 1, overlap 882492 882490 ATGGGTGGACAACAT GCTGCTACTGTACACAAC ATT ATTGTGCACAGC-GCAGC TACGGTGCAGACCAT purQ 883762 - 882980 - | phosphoribosylformylglycinamidine synthase I (purQ) gidA 883843 - 885756 + | glucose inhibited division protein A (gidA) glpX 887034 - 886069 - | fructose-1,6-bisphosphate II (glpX) TERM 463 886409 - 886392 - G 75 -9.1 -3.90318 | GCAGGACTGCAGAAA GCACACC TTCA GGTGCGC CCCCTATGCCGAGGT TERM 464 887397 - 887382 - g 73 -3.2 -5.03145 | CAAGGGCCCAAAAAA CCTTCG CCTC CTAAGG AATGTGAGTTTGACA AMF_739 887121 - 887819 + | hypothetical protein AMF_740 887983 - 888438 + | hypothetical protein AMF_741 888539 - 888823 + | hypothetical protein bioB 888810 - 889784 + | biotin synthase (bioB) TERM 465 890183 - 890165 - f 79 -8.8 -4.1466 | overlap 890177 AGGTAAGGGTGAAAA GGTGCGGT AAG AGCGCACC GTGCTCGTGGTGACA TERM 466 891801 - 891817 + G 74 -4.4 -4.82901 | gap 1, overlap 891803 CTTCGATAACAGATT CT-GCGG CAAG CCGCTAG TTTTTGTCGGCAGCA purL 890512 - 893562 + | phosphoribosylformylglycinamidine synthase (PurL) TERM 467 894629 - 894609 - g 71 -5.3 -4.57837 | AGATGTGGTCAAAAA GTACGGCCC GCT GAGCTGCAC CCGTACATAGCCTCG folP 893935 - 894639 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (folP/K) AMF_745 895285 - 894695 - | hypothetical protein AMF_747 896664 - 895384 - | hypothetical protein TERM 468 895423 - 895441 + g 70 -4.5 -4.63184 | opp_overlap 895423, overlap 895425 CATGTCTTCTATAAC TCGCAGC TGCAC GCTGCCA TTTTTCAGGTACGTT TERM 469 896745 - 896794 + H 83 -8.7 -4.36914 | CCACCAACCACAGGA GCGATGTACAGGTACAAGTTTGT GGTA ATAAATTTGTGCGTGCGCGTCGC TTTTGTGCGAGCAAA AMF_748 896839 - 897207 + | hypothetical protein TERM 470 897396 - 897423 + F 77 -11.2 -3.38072 | opp_overlap 897391, overlap 897398 897400 TCTGAAGCTATTCTA TAGTCGCCCTGC GGTG GCGGGGCGTCTG TTGATCTTAAATCGC TERM 471 897398 - 897421 + F 76 -11.6 -3.25787 | opp_overlap 897391, overlap 897396 897400 TGAAGCTATTCTATA GTCGCCCTGC GGTG GCGGGGCGTC TGTTGATCTTAAATC TERM 472 897400 - 897419 + F 81 -12.8 -3.18768 | opp_overlap 897391, overlap 897398 897396 AAGCTATTCTATAGT CGCCCTGC GGTG GCGGGGCG TCTGTTGATCTTAAA TERM 473 897514 - 897532 + G 71 -11 -2.74501 | opp_overlap 897514, overlap 897513 897504 TGTAAGGCAGGATAA TGACGCGC AGA GCGTGTCA ATTTCCGGCATTAAT AMF_749 897452 - 898342 + | hypothetical protein AMF_750 899233 - 898580 - | hypothetical protein purM 899347 - 900402 + | phosphoribosylaminoimidazole synthetase (AIR synthetase) (purM) xerC 901344 - 900394 - | integrase/recombinase ripx (xerC) TERM 474 902375 - 902359 - g 71 -6.5 -4.18018 | opp_overlap 902360 902363 902365 GTGTGTGAGGCAAAA GTAGGGG TTG CCGCTAC GGAAACTCTAATTGG gpsA 901567 - 902682 + | gylcerol-3-phosphate dehydrogenase (gpsA) omp15 902679 - 903002 + | outer membrane protein 15 AMF_755 903640 - 903230 - | ORF X AMF_756 903946 - 903707 - | ORF Y TERM 475 904136 - 904107 - R 73 -11.6 -2.87647 | gap 1, opp_overlap 904106 904103, overlap 904109 904113 904115 AGTTAGCATATGATA CAGCAAGA-GGTC AGGTA GACCGTCTTGCTG CTGCTTTAGGTAAGA TERM 476 904359 - 904340 - R 75 -10.8 -3.34239 | overlap 904338 GATAGTGATACAACA CTACTCTC TGCT GAGAGTAG CAACATCAGTACGTC rho 906723 - 905341 - | transcription termination factor RHO TERM 477 905526 - 905552 + g 71 -5.8 -4.39166 | opp_overlap 905526 ATTTAGAAATATCAA TCGCAGGGTAGA TTC TCTTGTCTGCGA TTTTCCTGTCTAGGA TERM 478 906612 - 906628 + g 90 -10.1 -4.52589 | overlap 906613 ACAGGTTCAGTACCC TCCCTCC TTC GGAGGGG TTTTCTGTGACACCA TERM 479 906613 - 906627 + g 76 -11.4 -3.31232 | overlap 906612 CAGGTTCAGTACCCT CCCTCC TTC GGAGGG GTTTTCTGTGACACC AMF_1050 907331 - 906993 - | hypothetical protein hslV 907450 - 908082 + | heat shock protein (hslV) hslU 908079 - 909527 + | heat shock protein (hslU) ubiE 909531 - 910274 + | ubiquinone/menaquinone biosynthesis methyltransferase (ubiE) metS 911849 - 910275 - | methionyl-tRNA synthetase (metS) TERM 480 910595 - 910581 - G 76 -7.2 -4.34488 | CAGATTCATAACAAA TTTGAG CGC CTCAAA AAACCGGTATTCCGC lysC 912088 - 913326 + | aspartokinase (lysC) AMF_765 913575 - 913360 - | hypothetical protein coxB 913583 - 914413 + | cytochrome c oxidase subunit II (coxB) TERM 481 915698 - 915713 + G 70 -2.4 -4.91084 | overlap 915699 915700 AATCGCAGCGCTCTT TGCCGC ATAT GCGGGG TTTTATTATTGGATA coxA 914511 - 916076 + | cytochrome c oxidase subunit I (coxA) ctaB 916086 - 916991 + | cytochrome c oxidase assembly factor (ctaB) AMF_769 917973 - 917044 - | hypothetical protein TERM 482 918362 - 918375 + G 74 -2.4 -5.19879 | GTTGTCCGATGCACT TACC GATGAG GGTA TTTTTGTGTTTGGCC purD 918117 - 919379 + | phosphoribosylamine-glycine ligase (purD) TERM 483 919683 - 919673 - g 91 -6.8 -5.0916 | GCCCCAACAGAAAAA GCTC AGG GAGC ATAACAAGTTGTTGG yajC 919410 - 919916 + | preprotein translocase subunit (yajC) glmS 919985 - 921811 + | glucosamine--fructose-6-phosphate aminotransferase (glmS) TERM 484 921970 - 921944 - T 79 -8.6 -4.37092 | opp_overlap 921951, overlap 921945 AGCTCTTGGACAAAA TGCATCACCCGG GCA CCGGATGTTGCG CAACAGCGACAGTAT TERM 485 921969 - 921945 - T 79 -12.1 -3.21934 | opp_overlap 921951, overlap 921944 GCTCTTGGACAAAAT GCATCACCCGG GCA CCGGATGTTGC GCAACAGCGACAGTA dnaN 923312 - 922173 - | DNA polymerase III beta chain (dnaN) rnd 924147 - 923533 - | ribonuclease D (rnd) czcR 925090 - 924212 - | transcriptional activator protein (czcR) TERM 486 925141 - 925127 - R 76 -3.4 -5.1675 | CCAGGCACCAAAAAA CCGCCC CCT GCACGG TGCCCTAACTTCTCA AMF_776 926032 - 925385 - | hypothetical protein ppa 927403 - 926876 - | inorganic phosphatase protein (ppa) TERM 487 928911 - 928891 - R 79 -12.5 -3.06711 | overlap 928886 928893 TAGGCACAAAGCACA CACCCGCGG TGA CCGCGGCTG TCAAGAGTAGACATG AMF_1051 929277 - 929053 - | hypothetical protein rpsI 929674 - 929213 - | 30S ribosomal protein S9 (rpsI) rplM 930158 - 929646 - | 50S ribosomal protein L13 (rplM) tolC 930194 - 931591 + | outer membrane protein (tolC) AMF_781 931610 - 932203 + | hypothetical protein mrp 933362 - 932331 - | mrp protein (mrp) TERM 488 933897 - 933909 + G 70 -4.7 -4.59773 | AGACCTGCATTCCAG CCAGG CAG CCGGG TTTTTCGAAATGCCG prsA 933466 - 934443 + | Ribose-phosphate pyrophosphokinase (prsA) gatC 934440 - 934760 + | glutamyl-tRNA(Gln) amidotransferase, C subunit acnA 937501 - 934796 - | aconitate hydratase (acnA) TERM 489 935284 - 935294 + g 95 -5.4 -5.58179 | CACCCTGCACTTCAT TGAG CAT CTCA TTTTTTATTCTGATG apaG 938260 - 937820 - | APAG protein TERM 490 938455 - 938440 - g 71 -7.6 -3.96624 | opp_overlap 938439 TAGCCGCATCACAAA TGGGTT ACAG AACCCA CGTATTTGCAGAACA purK 938265 - 939419 + | phosphoribosylaminoimidazole carboxylase (purK) AMF_789 941702 - 939549 - | hypothetical protein TERM 491 942420 - 942433 + G 74 -2.3 -5.08601 | ATTGCTAGCATCCCT CAGCA TTCT TGCGG TTTTTCTTGCGGTGC TERM 492 943517 - 943500 - g 71 -7.7 -4.03234 | overlap 943486 943485 CCCTGCTGATAGAAA CATGACC AGCA GGCCATG CACTCCACCTACAGC AMF_790 942316 - 943794 + | hypothetical protein AMF_792 944106 - 945575 + | hypothetical protein AMF_793 949523 - 945606 - | hypothetical protein TERM 493 947479 - 947493 + g 80 -4.2 -5.15634 | GAGTCAGCGCGCGCG CAAGGG TCG CCGTTG TTTTTTCCTCCACTG TERM 494 948464 - 948483 + g 70 -4.2 -4.63928 | overlap 948481 TACTAATCAGATACT CAGTTCTG CTGG CAGCGCTG TTTTTGCAGTAGTCT TERM 495 949055 - 949066 + g 70 -4.4 -4.63218 | opp_overlap 949044 949047 CGAAGCATCCCAACG GTTG CATA CAAC TTTTGTTCCAGCCAC AMF_794 953857 - 949724 - | hypothetical protein TERM 496 950113 - 950129 + g 87 -7.9 -5.04222 | overlap 950106 TAGTCGGAGGGTTAT GCCCGTT GGT ATCGGGC TTTTTCGTTTCATTG AMF_795 959786 - 954192 - | hypothetical protein TERM 497 957794 - 957810 + g 74 -11.5 -3.14881 | overlap 957806 AAGCAACGGTATTCC CGCCCGG GTT CCGGGTG TTACTGGCACCCTTG TERM 498 960211 - 960225 + r 76 -12.8 -2.60496 | opp_overlap 960195, overlap 960210 960209 GTGCGCGGCACCATG GGCGGC ATT GCCGCC GTATTTCCGCACCAC virB4 962769 - 960340 - | VirB4 protein TERM 499 960972 - 960962 - G 82 -8.2 -4.58663 | ATTAGGCGCGAAAAA GCCC CCT GGGC CCCCCACCAAGCACG TERM 500 962869 - 962854 - R 70 -3.2 -4.8622 | opp_overlap 962854, overlap 962856 962862 962863 TCCGTGAACCAAAAA TAGGCA AACC TGCCGA TGTTCAGAAAGCCCG AMF_797 963276 - 962902 - | hypothetical protein AMF_798 963926 - 963549 - | hypothetical protein TERM 501 963771 - 963783 + g 71 -6.3 -4.31563 | opp_overlap 963770 GACATTACATATCAC TGTTG TGG CAACA TCTTTTTTATCATTC TERM 502 964040 - 964054 + r 80 -10 -4.03769 | GTGCACTTGGCATAT GGTGAG CAA CTCACC TTGTTTGCATTCTAT TERM 503 964639 - 964606 - R 82 -11.6 -3.66178 | opp_overlap 964629, overlap 964607 964609 TTCCGCAAGGCTAAA CCACCGCCGCCCCG GGGGTG CAGGGCGGCAGCGT GGGCGCCTGTCTACC TERM 504 964638 - 964607 - R 84 -15.1 -2.79492 | opp_overlap 964629, overlap 964606 964609 TCCGCAAGGCTAAAC CACCGCCGCCCCG GGGGTG CAGGGCGGCAGCG TGGGCGCCTGTCTAC TERM 505 964636 - 964609 - R 83 -14.1 -2.94412 | opp_overlap 964629, overlap 964607 964606 CGCAAGGCTAAACCA CCGCCGCCCCG GGGGTG CAGGGCGGCAG CGTGGGCGCCTGTCT AMF_799 965303 - 964713 - | hypothetical protein AMF_1052 965861 - 965313 - | hypothetical protein TERM 506 965856 - 965867 + g 71 -7.2 -4.03234 | AGAACAAAAAGTCTC GGCC AACA GGCC TTTGTATGCGCGCGC AMF_800 966428 - 966697 + | ORF Y AMF_801 966764 - 967153 + | ORF X TERM 507 967528 - 967510 - g 83 -9.6 -4.17023 | TCAAGGACCTGAAAA TCATCGGC GAA ACCGATGA GGATGAAATGGATGT msp3 967284 - 969887 + | major surface protein 3 (MSP3) TERM 508 969911 - 969931 + F 100 -16.9 -5.72622 | AGATAGAAGGCTTAG GGGGAGTGC AAT GCACTCCCC TTTTTTATTTGTCCC hflK 970134 - 971246 + | hflK protein hflC 971164 - 972120 + | hflC protein TERM 509 972232 - 972217 - g 73 -5.4 -4.59773 | gap 1, opp_overlap 972220, overlap 972219 TGGCAGGGTCAAAAA CTG-CCG TTC CGGACAG CCGTAGGGGGTTTTC TERM 510 972439 - 972417 - g 71 -7.7 -4.09685 | opp_overlap 972433 GTTGACCCTTTAAAA CCCAGAAAG GTAGT CTCCCTGGG CTCGGGGTTCATAGT AMF_805 972123 - 973586 + | hypothetical protein TERM 511 973587 - 973614 + G 82 -6.9 -4.76644 | opp_overlap 973584, overlap 973586 973585 973589 AACAAGAATGCATAG GCGTGGCGCCC TGTTCT GGGCGTTACTC TTTTTGCTGCATCTT TERM 512 973589 - 973612 + G 74 -8.1 -3.99327 | opp_overlap 973584, overlap 973586 973585 973587 CAAGAATGCATAGGC GTGGCGCCC TGTTCT GGGCGTTAC TCTTTTTGCTGCATC AMF_806 973579 - 974193 + | hypothetical protein TERM 513 974436 - 974415 - g 87 -7.9 -4.91109 | GCTTGACCAGAAAAA GAACGGCGC TGGT GCGCGGCTC AGAAGTAGTTGAGAT TERM 514 974680 - 974670 - g 79 -6.8 -4.68593 | CTCAGGATCCAAAAA CTGC GCT GCAG GAGTGGGTACAGGGC rnc 974180 - 974878 + | ribonuclease III (rnc) TERM 515 975069 - 975050 - g 82 -7 -4.79352 | GGAGGCACAACAAAA GAGGCCGC ATCT GTGGCCCC AGTGAAAAAAACGGG cox11 974909 - 975532 + | cytochrome c oxidase assembly protein (cox11) AMF_809 976324 - 975542 - | hypothetical protein TERM 516 975872 - 975859 - G 73 -5.9 -4.53303 | overlap 975860 CACCGGCACACAAAA CGCCG AACG CGGCA GAAAAAGTACACAGC ana29 977460 - 976663 - | ana29 protein TERM 517 977089 - 977075 - G 85 -7.8 -4.86731 | opp_overlap 977075 977077 CCGCTCGAAACAAAA GACACG TGC CGCGTC TCATGTCTCCGTCCC TERM 518 977335 - 977321 - G 73 -11.4 -2.88249 | GACAGCCTCCACACA CGCGCT GCA AGCGCG GCAACTACTATGACC AMF_812 977593 - 977814 + | hypothetical protein AMF_813 978745 - 977870 - | hypothetical protein TERM 519 978224 - 978209 - G 100 -11.8 -5.01811 | GCACGAAATCAAAAA CGCCGC AACT GCGGCG AGAAATATAACACTT TERM 520 978892 - 978869 - R 85 -7.4 -4.75472 | overlap 978864 GGCAGAGCAACAAAA CACTTTGCTG TGCA CAGCAACGCG AGCTTCTTGGAGACT AMF_814 980276 - 978942 - | hypothetical protein TERM 521 980083 - 980093 + g 90 -8.2 -5.00884 | overlap 980072 CCTTCGGGGTCGTAA GCCG ACC CGGC TTTTTTGAACGCAAT AMF_815 981710 - 980289 - | hypothetical protein TERM 522 980668 - 980681 + gr 72 -8.1 -3.90744 | overlap 980654 980653 TGTGAGGCAGAGACT CGCGT TGCT ACGCG TTGTTTGCGGACCAA TERM 523 981261 - 981272 + gr 71 -7.2 -4.11692 | CATCTCCATCATCAG CGGC AGGT GCCG TTTTCCCACTAACTC lspA 982185 - 981673 - | lipoprotein signal peptidase (lspA) TERM 524 981971 - 981957 - GR 81 -6.4 -5.00846 | CAAACAGTACAAAAA GCATCA ATA TGACGC CCAGAGAGACATACG ribF 983175 - 982264 - | riboflavin kinase / FAD synthetase protein (ribF) grxC1 983243 - 983485 + | glutaredoxin 3 (grxC1) hemK 984494 - 983637 - | protein-(glutamine-N5) methyltransferase map 985472 - 984675 - | methionine aminopeptidase (map) sucB 986789 - 985476 - | dihydrolipoamide acetyltransferase component (sucB) TERM 525 986623 - 986609 - G 84 -4.2 -5.29445 | overlap 986610 986611 TTTCAACAATAAAAA CCGC CTCTTCT GCGG AAACGGCATCACCAA AMF_822 987395 - 986820 - | hypothetical protein panC 988340 - 987441 - | pantoate-beta-alanine ligase (panC) TERM 526 987851 - 987861 + g 71 -5.4 -4.46112 | TTTCCCCGAGGATCA TGCA ATG TGCA TTTGTTTGCATCACC dacA 988429 - 989571 + | Serine-type D-Ala-D-Ala carboxypeptidase (dacA) dsbD 990787 - 989558 - | C-type cytochrome biogenesis protein (dsbD) TERM 527 990841 - 990823 - R 70 -11 -2.69151 | overlap 990820 CTCTGGCATACACCA CCAGCAAG TTA CTTGCCGG ACGCACATGCCGATA AMF_826 991163 - 990831 - | hypothetical protein AMF_827 991201 - 992304 + | hypothetical protein oma87 992301 - 994649 + | outer membrane protein AMF_829 994636 - 995196 + | hypothetical protein fabZ 995202 - 995645 + | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (fabZ) TERM 528 996502 - 996487 - g 71 -6.8 -4.15222 | AGTTTCTGTAATAAA GCACGG GAAC CCATGC GGGGTGGCAGTTTCT purH 995660 - 997201 + | phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase)(purH) pgsA 997653 - 997210 - | CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (pgsA) TERM 529 997985 - 997959 - H 76 -8 -4.19506 | overlap 997961 ACTGCAAGTCTAAAA TACGCCAAATCG CCA CGAATTAGCGCA ATACCTGGCCGCTCT TERM 530 997983 - 997961 - H 70 -8.4 -3.69618 | overlap 997959 TGCAAGTCTAAAATA CGCCAAATCG CCA CGAATTAGCG CAATACCTGGCCGCT AMF_834 998461 - 999765 + | hypothetical protein TERM 531 999994 - 1000006 + G 79 -7.7 -4.56314 | overlap 999982 CGCTGCCTGCTGTTG CGCAT GGC ATGCG TTTTCCTTATGTTGC TERM 532 1000150 - 1000136 - g 76 -6.4 -4.63172 | overlap 1000139 1000140 GAGGAAACTACAAAA CAACGC AAC GCATTG CAAAAAAGCTGGGCA slt 999793 - 1001817 + | soluble lytic murein transglycosylase precursor (slt) surf1 1002510 - 1001824 - | surfeit locus protein 1 (surf1) TERM 533 1004706 - 1004696 - g 84 -4.6 -5.26247 | overlap 1004698 CGAAAACAAACAAAA GAGC GGT GCCC CGCGGCCAGACGCTT TERM 534 1004709 - 1004698 - g 74 -7.2 -4.22317 | overlap 1004696 AAAACAAACAAAAGA GCGG TGCC CCGC GGCCAGACGCTTCTA AMF_837 1002714 - 1004861 + | hypothetical protein egsA 1006306 - 1004954 - | Glycerol-1-phosphate dehydrogenase (NAD(P)) TERM 535 1005307 - 1005326 + g 76 -2.8 -5.06585 | gap 1 AAGTTTGCACAAGTC GCGGTTGCA TGT TGCA-CAGC TTTTTCTGTAGTTTC TERM 536 1005748 - 1005770 + g 82 -7 -4.78107 | CGCGCGGCAGTTGGC CGGCAAAAGA TTT TTTTGTGCCG TTTTTAATCGTAATG atpB 1006375 - 1007178 + | ATP synthase A chain (atpB) AMF_840 1007889 - 1007413 - | hypothetical protein atpE 1008549 - 1008791 + | ATP synthase C chain (atpE) AMF_842 1008798 - 1009298 + | hypothetical protein AMF_843 1009295 - 1009792 + | hypothetical protein ftsA 1011175 - 1009901 - | cell division protein FTSA (ftsA) trkH 1012778 - 1011207 - | potassium uptake protein trkH (trkH) TERM 537 1011730 - 1011720 - G 70 -4.6 -4.6526 | opp_overlap 1011720, overlap 1011711 1011710 AGAAACGGCTAAAAA GCCC CAG GAGC TGTAGTCGCAGTTAG TERM 538 1013050 - 1013034 - g 70 -2.2 -5.03314 | TGCAGCCCTAAAAAA GCTCAA TAGTC TAGAGC TGAGTGGTGGCTACG TERM 539 1013847 - 1013858 + G 82 -7.2 -4.61527 | GAAGGACCATAAGCC GCGG TATT CCGC TTTTTGGCCAATTTT mesJ 1012849 - 1014354 + | cell cycle protein (mesJ) TERM 540 1014407 - 1014430 + G 73 -11.1 -2.90615 | overlap 1014404 1014409 GGTTGATTGTATGGT CAGCAGTGA TTGCCC TCACTGCTG TGCTTTACACCCAGT TERM 541 1015409 - 1015395 - g 79 -7 -4.62069 | CGTGCACGCTAAAAA GGTGCC CAT GGCCCC GGATGTTGATGTCAG ftsH 1014367 - 1016199 + | cell division protein (ftsH) AMF_1053 1019067 - 1018861 - | hypothetical protein TERM 542 1018914 - 1018926 + Gg 80 -10.5 -3.78351 | CAGGGCTGCGCGTGG GGGCG ACT CGCCC TTTAGTGGCATTTCT secA 1016320 - 1019010 + | preprotein translocase subunit (secA) AMF_849 1019835 - 1019086 - | hypothetical protein czcD 1020792 - 1019839 - | cation efflux system protein (czcD) ccmB 1021621 - 1020959 - | heme exporter protein B (ccmB) TERM 543 1021528 - 1021516 - G 73 -3.3 -4.98255 | GCGGAAGTACAAAAA GTGCG ATA CCCAC TACTACTACAAACAG dksA 1021722 - 1022135 + | dnaK suppressor protein (dksA) dtbS 1023164 - 1022463 - | dethiobiotin synthase (dtbS) TERM 544 1023382 - 1023397 + G 76 -4.6 -5.00616 | TATCGACCGATATGG GGCGCG AGAG TGCGTC TTTTTTCACACAGAA ftsY 1023222 - 1024139 + | cell division protein (ftsY) icd 1024414 - 1025865 + | isocitrate dehydrogenase (icd) TERM 545 1026961 - 1026975 + G 71 -5.6 -4.58424 | opp_overlap 1026961, overlap 1026963 GGGTCGGCAACGCAA GCCTGG GAG CCAGCC TTTTGTCTAGTGATG recJ 1026006 - 1027766 + | single-stranded-DNA-specific exonuclease (recJ) AMF_857 1028040 - 1027741 - | hypothetical protein TERM 546 1029435 - 1029424 - g 70 -2.2 -5.00616 | overlap 1029434 GCTGTTGGCAAAAAA GCTC TTAG AAGC CCAACAGGCGGCAAG pcnB 1028231 - 1029490 + | poly (A) polymerase (pcnB) ndk 1030067 - 1029627 - | nucleoside diphosphate kinase (ndk) TERM 547 1029662 - 1029678 + g 74 -8.1 -4.04206 | TGCTCATGATTTCGT GTTCTTT AAA AAAGAAC TTTATCTCCCACTCA TERM 548 1030130 - 1030106 - H 73 -6.4 -4.46926 | gap 1, overlap 1030121 CATGCTAGCATAAAA CGC-GCGCACT AACA AGTGCCCAGCG CGCTGCCTCAAAAAA TERM 549 1030135 - 1030177 + H 80 -3.4 -5.32396 | opp_overlap 1030146 1030148, overlap 1030136 1030138 1030146 AGTGCCCAGCGCGCT GCCTCAAAAAATCTCCGGAA GTT TCCCGGATATTTATTGATGA TTTTATTTTTAATCT TERM 550 1030166 - 1030146 - H 81 -6.1 -5.00616 | opp_overlap 1030138 1030136 1030135 1030146, overlap 1030148 CGCTGCCTCAAAAAA TCTCCGGAA GTT TCCCGGATA TTTATTGATGATTTT AMF_860 1030296 - 1030859 + | transcriptional regulator TERM 551 1031508 - 1031490 - g 70 -3 -4.90266 | overlap 1031492 1031495 GCCATGAAGGAAAAA CAGCAGGG TGG CACCGCTA AGGCAGCGGCGGGCG omp1 1031274 - 1032266 + | outer membrane protein 1 TERM 552 1032890 - 1032919 + G 80 -13.5 -2.9732 | overlap 1032888 TTCAGTGTTGACGGC GGCAGCTATGCCG TGAG CGGCAACGCTGCC TGGTTTGCATTCCCA opag3 1032431 - 1033369 + | msp2 operon associated protein 3 opag2 1033384 - 1034295 + | msp2 operon associated protein 2 opag1 1034307 - 1034711 + | msp2 operon associated protein 1 msp2 1034724 - 1035971 + | major surface protein 2 (MSP2) TERM 553 1035995 - 1036015 + TF 100 -16.9 -5.72622 | AGATAGAAGGCTTAG GGGGAGTGC AAT GCACTCCCC TTTTTTATTTGTCCC AMF_867 1036676 - 1036161 - | hypothetical protein AMF_868 1036633 - 1037217 + | hypothetical protein TERM 554 1037835 - 1037853 + Tr 83 -9.6 -4.17023 | ACATCCATTTCATCC TCATCGGT TTC GCCGATGA TTTTCAGGTCCTTGA AMF_870 1038706 - 1038311 - | ORF X omp2 1042930 - 1042196 - | Outer membrane protein 2 AMF_873 1042078 - 1042284 + | hypothetical protein omp3 1043733 - 1043011 - | outer membrane protein 3 AMF_877 1043706 - 1043954 + | hypothetical protein TERM 555 1044496 - 1044478 - g 83 -13.1 -3.50832 | opp_overlap 1044476, overlap 1044476 CTTCAAATTGAAAGA CGCCGGG AATGA CCCGGCG GGTATACTTGCCTAC TERM 556 1044910 - 1044899 - g 74 -3.6 -5.02502 | CAGAGCATACAAAAA GACC CTAA GGCC GAATTCCCAAGAAGT omp4 1044224 - 1045441 + | Outer membrane protein 4 TERM 557 1045461 - 1045488 + G 79 -12 -3.18832 | opp_overlap 1045441 1045461 1045462, overlap 1045459 1045457 1045462 GCCAACCACAAAAAT TCGGGGGCAGCA GCGC TGTTGCTCCCGG TGTGTTATACAGTTG TERM 558 1045462 - 1045487 + G 77 -13.3 -2.50817 | opp_overlap 1045441 1045462 1045461, overlap 1045461 1045459 1045457 CCAACCACAAAAATT CGGGGGCAGCA GCGC TGTTGCTCCCG GTGTGTTATACAGTT AMF_879 1045419 - 1045655 + | hypothetical protein TERM 559 1045751 - 1045765 + F 73 -9.2 -3.65656 | opp_overlap 1045743 GTAGAATCCCGGGCA CTGGGC TCG GCCCGG TTGTATATATGCTGG omp5 1045774 - 1046913 + | Outer membrane protein 5 AMF_881 1048096 - 1047281 - | hypothetical protein ccmF 1050069 - 1048147 - | cytochrome c-type biogenesis protein (ccmF) TERM 560 1049234 - 1049224 - G 73 -5.4 -4.74132 | AGAGCGCACTAAAAA TGTG CCG CACA AGCTGGAAATAAACG TERM 561 1050746 - 1050735 - g 73 -3 -5.00616 | GGCTGGTTGAAAAAA TCAA AAAG TTGA GGGCAGTGCAGTTAG TERM 562 1050977 - 1050953 - g 70 -4.9 -4.62471 | AAGCTATACAGAAAA CAGCAGCCCAT ATT ATGGGACACCG TAGATTGCACCGCTA TERM 563 1051609 - 1051598 - g 81 -5.8 -4.99861 | GAGCAAGTACAAAAA GTGC AGTG GCAC CCGGACAGCATGCGT valS 1050428 - 1052896 + | valyl-tRNA synthetase (valS) smpB 1054552 - 1054103 - | small protein B-like protein (smpB) TERM 564 1054142 - 1054152 + g 82 -6.8 -4.85599 | ACTCTTCTCGCGCTG CCAG TCC CTGG TTTTTATAGCCTCGC ribB 1055187 - 1054555 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase (ribB) greA 1055730 - 1055206 - | transcription elongation factor greA (greA) TERM 565 1055247 - 1055258 + g 82 -7.2 -4.65895 | GGTAGATCTTATAGT CGCC CCTA GGCG TTTTTACCTCAACAC atpA 1057250 - 1055727 - | F1-ATP synthase alpha subunit (atpA) atpH 1057842 - 1057270 - | ATP synthase delta chain (atpH) TERM 566 1057636 - 1057649 + g 70 -2.4 -4.95302 | GCTCTTGCCCAAAGC TTGC AACACC GCAA TTTTGTTCTCTTTCG AMF_889 1058669 - 1058418 - | hypothetical protein AMF_890 1059911 - 1058673 - | hypothetical protein AMF_891 1060660 - 1059908 - | hypothetical protein lolE 1061891 - 1060665 - | Lipoprotein-releasing system transmembrane protein (lolE) TERM 567 1061105 - 1061094 - G 78 -2.2 -5.31275 | overlap 1061097 GGCCAGGATAAAAAA CATG GCGT CACG CTCCAATTCAAGGGC holA 1062078 - 1063220 + | Putative DNA polymerase III delta subunit (holA) gshA 1064444 - 1063215 - | Glutamate-cysteine ligase (gshA) TERM 568 1064717 - 1064705 - R 70 -9.1 -3.63627 | opp_overlap 1064704 GGTTCAGACCTGAAA TGCCG TGA CGGCA ATGTCTAACAAAAAA gltA 1066090 - 1064807 - | citrate synthase (gltA) guaA 1067686 - 1066097 - | GMP synthase (glutamine-hydrolyzing) (guaA) AMF_898 1068033 - 1067803 - | hypothetical protein AMF_899 1068165 - 1068560 + | hypothetical protein TERM 569 1068564 - 1068574 + F 70 -8.2 -3.7347 | opp_overlap 1068555 1068564 ACAGAATACTAGGAA CCGG CAG CCGG TTGTTACGTATTACG TERM 570 1068799 - 1068847 + F 85 -11.8 -3.71279 | gap 2, opp_overlap 1068827, overlap 1068796 TACTACGTGCTCTGC GGGTTTTCCT-GGGGCCTC-GTCT AAG AGACAGGGGCCCCGAGGACAGCAC TTCCTTTTGCGTCTT TERM 571 1070176 - 1070162 - g 76 -4.2 -4.95155 | overlap 1070163 CTGACATCACAAAAA GTCTGG TCA CCAGAG CCAAAGAGAGGAAAT pdhC 1069171 - 1070472 + | dihydrolipoamide acetyltransferase component (pdhC) fbaB 1070770 - 1071690 + | fructose-bisphosphate aldolase (fbaB) pbpA1 1073749 - 1071944 - | penicillin-binding protein (pbpA1) secF 1074689 - 1073730 - | protein export membrane protein secF (secF) TERM 572 1074088 - 1074071 - G 76 -7.7 -4.39133 | overlap 1074072 CAATAATCATCAAAA CTCCAGC CGTT GCTGGAA GACCAAACTCAATGC TERM 573 1074514 - 1074499 - G 73 -3.2 -4.99035 | overlap 1074478 1074500 TCATCCAGAGAAAAA TTGGCA ACCA TGCCAC CAGTAAAGTCAGCCC TERM 574 1074774 - 1074758 - H 71 -7.3 -4.07568 | GTTGCTCTTGCAAAA TATCGAC TGC GCCGATA TAAACTGCACGTACA AMF_904 1074811 - 1075191 + | hypothetical protein hemA 1076426 - 1075194 - | 5-c acid synthase (delta-aminolevulinate synthase) (hemA) tyrS 1077903 - 1076596 - | tyrosyl-tRNA synthetase (tyrS) TERM 575 1077044 - 1077030 - G 86 -8.5 -4.7373 | GCAGCTCAGTAAAAA GCCGC AGTAG GCGGC CGACTTCCACATCTG TERM 576 1077120 - 1077134 + g 76 -8.5 -4.14874 | opp_overlap 1077118 CGGCGTCAAGCCATA CCGCC CCATC GGCGG TTTTACCCATCTTCT glnA 1078063 - 1079556 + | glutamine synthetase (glnA) TERM 577 1079580 - 1079601 + G 74 -4.3 -4.77925 | opp_overlap 1079587, overlap 1079587 CTGTGTTCAGCCCGA TAGGGAAGG TTGC CCAACCCTA TTTTTGCAGTTTTTT TERM 578 1080039 - 1080052 + G 70 -8.1 -3.75193 | overlap 1080042 1080044 1080046 TGATAGATCTGGGAT GGGCA TATA TGCCC TTTGCATATATCGTT mraY1 1079567 - 1080595 + | phospho-n-acetylmuramoyl-pentapeptide-transferase (mraY1) TERM 579 1081153 - 1081172 + G 71 -5.6 -4.52589 | overlap 1081155 TGCTTTGTTCTCCGC AACCTGCG AATC CGCGGGTG TTTTGTCTGAAAGCC TERM 580 1081155 - 1081170 + G 72 -8.2 -3.87627 | overlap 1081153 CTTTGTTCTCCGCAA CCTGCG AATC CGCGGG TGTTTTGTCTGAAAG TERM 581 1081482 - 1081466 - g 70 -2.9 -4.87273 | AACATCGTACAAAAA GCCACAA AAT TTGCTGC GGAATATGTAGATGC ispB 1080605 - 1081588 + | octaprenyl-diphosphate synthase (ispB) AMF_910 1083744 - 1081663 - | hypothetical protein mkl 1084590 - 1083871 - | Ribonucleotide transport ATP-binding protein (mkl) AMF_912 1085374 - 1084595 - | hypothetical protein TERM 582 1085238 - 1085228 - G 74 -2.4 -5.07567 | CCACATCTCAAAAAA CTGC CTC GCTG CTATTGGGAAGTAGT rpe 1086175 - 1085393 - | ribulose-phosphate 3-epimerase (rpe) polA 1088846 - 1086252 - | DNA polymerase I (polA) TERM 583 1089633 - 1089647 + H 71 -7.8 -4.08216 | TCCACTTGCTCTGTG CTGGTG TGG CGCCAG TTTTGCACGCAGTAG AMF_915 1089663 - 1090049 + | hypothetical protein argF 1090072 - 1090980 + | ornithine carbamoyltransferase (argF) recF 1090990 - 1092105 + | RECF protein (recF) omp6 1092563 - 1092102 - | outer membrane protein 6 TERM 584 1092158 - 1092144 - G 74 -8.6 -3.99374 | opp_overlap 1092144 CCCTAGCAACAAGAA CAAGGA GTT TCCTTG TTTCCAATGTCTACC TERM 585 1092144 - 1092158 + g 70 -8.6 -3.65425 | opp_overlap 1092144 CCCTAGCAACAAGAA CAAGGA GTT TCCTTG TTTCCAATGTCTACC TERM 586 1092583 - 1092566 - R 82 -12.7 -3.42078 | GAGACCTGAGCACAA CCCCTCC GATT GGAGGGG GAACGCAATCAGCAG omp7 1093799 - 1092603 - | outer membrane protein 7 TERM 587 1093592 - 1093579 - G 79 -8.1 -4.29845 | CAATCGAAGTCAAAA GGGGA AGTG TCCCC ACCAACGGCATCTTT omp8 1095072 - 1093864 - | outer membrane protein 8 omp9 1096345 - 1095134 - | outer membrane protein 9 omp10 1097675 - 1096407 - | outer membrane protein 10 AMF_923 1098646 - 1098104 - | hypothetical protein TERM 588 1098585 - 1098569 - G 83 -3 -5.38326 | GGAATCAAACAAAAA CAACCA ACACG TGGTTA TAGCAAAAACTCCTC TERM 589 1099566 - 1099520 - g 76 -7.2 -4.38092 | gap 1, overlap 1099517 GAAGAAGTAAAAGAA GTGGCTC-CTGCTCCGGCAAC GGAAAA GCGGCCGGAAGAGAGTGCCAC AGGTGAGTATGTCCG AMF_924 1098998 - 1099642 + | hypothetical protein TERM 590 1099659 - 1099702 + T 72 -9.6 -3.48668 | overlap 1099690 CGCCTTCGTTTTTCC TGGTAGCTGACGGCAACAGC GAGA GTTGTTGCGGTCGGTTGCGA TTGTGATGTGCTGGT AMF_926 1101030 - 1100107 - | hypothetical protein TERM 591 1101048 - 1101070 + r 74 -2.6 -5.06414 | TTATACTTGTGTGGG TTGCGCTGGA GCA TTCTGGGCAA TTTTTATTAAGAAAA mviN 1102686 - 1101181 - | virulence factor MVIN (mviN) TERM 592 1101314 - 1101301 - G 74 -2.3 -5.06414 | opp_overlap 1101301 CCCCTGGAAGAAAAA CGGTG TCAA CAGCG TTTTTGCCATACAGA TERM 593 1101441 - 1101429 - G 70 -9.1 -3.64198 | TCTTGAGATACACAA GCAGC AAA GCTGC ATAGGTCCACGAACC TERM 594 1103195 - 1103207 + G 70 -4.7 -4.63218 | CTGTGTGCGTGTGCC GCACC TCT GGGGC TTTTCTTAGGCAGGA lgt 1102772 - 1103629 + | prolipoprotein diacylglyceryl transferase (lgt) AMF_1054 1103869 - 1104084 + | hypothetical protein rpsT 1104653 - 1104333 - | 30S ribosomal protein S20 (rpsT) plsC 1105467 - 1104742 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase (plsC) def 1105499 - 1106056 + | N-formylmethionylaminoacyl-tRNA deformylase TERM 595 1106475 - 1106450 - g 73 -11.1 -3.01924 | gap 1 GATGGGCCCGGAACA TGC-GCGCCTCC CGT GGCGGCGCTGCA AGAACAAGAAGGGTG AMF_934 1106303 - 1107175 + | hypothetical protein AMF_936 1107317 - 1108045 + | hypothetical protein TERM 596 1108054 - 1108093 + T 79 -13.8 -2.79796 | gap 1, opp_overlap 1108063, overlap 1108063 GGTGTAGACTATCTA TTGCAAGGAGCACCACAGA TTT TCT-TGGTGCTTCTTGCAC TGTCCTCAGCTGGGG TERM 597 1108063 - 1108084 + T 70 -8.1 -3.67112 | gap 1, opp_overlap 1108063, overlap 1108054 TATCTATTGCAAGGA GCACCACAGA TTT TCT-TGGTGC TTCTTGCACTGTCCT AMF_937 1108363 - 1108136 - | hypothetical protein TERM 598 1108351 - 1108362 + g 86 -5.8 -5.15634 | CCAAAGCAGTACATG TGCG TTGC CGCA TTTTTTGGTAAAGTG AMF_938 1108628 - 1108422 - | hypothetical protein AMF_939 1109373 - 1108864 - | hypothetical protein TERM 599 1109441 - 1109429 - R 76 -2.7 -5.15634 | TACCCTAGGAAAAAA TAGAT TTA ATCCA TCCAAGAATTTTAGA AMF_940 1110527 - 1109418 - | hypothetical protein uvrB 1112895 - 1110940 - | excinuclease ABC subunit B (uvrB) TERM 600 1112719 - 1112732 + g 70 -8.1 -3.76224 | opp_overlap 1112718 1112719 GTGTGCAATTATAAT CGCAG GACG CTGCG TTTGCTCAATCACCG TERM 601 1113152 - 1113174 + G 71 -6.2 -4.3255 | overlap 1113154 AAAGGAAGGCTCTAT GGCTTGAGTG ATA CACTCCAGGC TTTCTTGCTTAAGGA secD 1112960 - 1114465 + | protein-export membrane protein (secD) TERM 602 1114618 - 1114599 - f 70 -2.1 -4.96848 | overlap 1114602 1114612 GGGTGTATATAAAAA TCACTGG GAAAAA CCAGCAA TGCCCGTATTGCGGG TERM 603 1114633 - 1114612 - f 70 -4.4 -4.60889 | opp_overlap 1114619, overlap 1114602 1114599 1114620 AATCACTGGGAAAAA CCAGCAAT GCCCGT ATTGCGGG AGGGTTTTGAGTTGA AMF_944 1114955 - 1116778 + | hypothetical protein TERM 604 1117107 - 1117126 + F 75 -10.8 -3.34239 | overlap 1117105 GACGTACTGATGTTG CTACTCTC AGCA GAGAGTAG TGTTGTATCACTATC TERM 605 1117330 - 1117359 + F 73 -11.6 -2.87647 | gap 1, opp_overlap 1117329 1117326, overlap 1117332 1117336 1117339 TCTTACCTAAAGCAG CAGCAAGACGGTC TACCT GACC-TCTTGCTG TATCATATGCTAACT AMF_946 1117520 - 1117753 + | ORF Y AMF_947 1117820 - 1118212 + | ORF X ubiD 1119761 - 1118277 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 606 1118622 - 1118640 + g 79 -6.6 -4.72272 | overlap 1118623 CATGGCTATCCTCCG CGCGTGCC CTG GGTACGCC TTTTTGATGGAAACC TERM 607 1118623 - 1118639 + g 72 -10.1 -3.43042 | overlap 1118622 ATGGCTATCCTCCGC GCGTGCC CTG GGTACGC CTTTTTGATGGAAAC omp11 1120866 - 1119871 - | Outer membrane protein 11 TERM 608 1120930 - 1120886 - R 76 -8.5 -4.20025 | opp_overlap 1120899, overlap 1120887 1120890 AACCCTCAACACAAA GCCACGCACGATAGCCCGCCA TAA CAGCGGGCTATCGTACACCAA GTATTTACTCCCGTA TERM 609 1120929 - 1120887 - R 77 -12 -3.11292 | opp_overlap 1120899, overlap 1120886 1120890 ACCCTCAACACAAAG CCACGCACGATAGCCCGCCA TAA CAGCGGGCTATCGTACACCA AGTATTTACTCCCGT TERM 610 1120926 - 1120890 - R 100 -18.1 -2.76227 | opp_overlap 1120899, overlap 1120887 1120886 CTCAACACAAAGCCA CGCACGATAGCCCGCCA TAA CAGCGGGCTATCGTACA CCAAGTATTTACTCC omp12 1121917 - 1121060 - | Outer membrane protein 12 omp13 1123183 - 1122125 - | outer membrane protein 13 TERM 611 1123890 - 1123877 - g 74 -2.4 -5.18643 | CCAAGGAAAACAAAA TCCT GACTGT AGGA GTGGTAACCAAGCCG ftsZ 1123468 - 1124721 + | cell division protein (ftsZ) AMF_953 1125098 - 1125562 + | hypothetical protein parA 1125636 - 1126451 + | chromosome partitioning protein (parA) TERM 612 1126628 - 1126640 + G 73 -10.5 -3.29461 | TTGGCTAGCTCTATC GCCCG CAA CGGGC TTATCCAGCCAATTA parB 1126448 - 1127275 + | chromosome partitioning protein (parB) rimM 1127287 - 1127859 + | 16S rRNA processing protein (rimM) trmD 1127856 - 1128563 + | tRNA (guanine-N1)-methyltransferase (trmD) rplS 1128556 - 1128960 + | 50S ribosomal subunit L19 (rplS) cinA 1129491 - 1128967 - | competence / damage-inducible protein (cinA) thrS 1129557 - 1131467 + | Threonyl-tRNA synthetase (thrS) infC 1131497 - 1132030 + | translation initiation factor IF-3 (infC) AMF_963 1132892 - 1132437 - | hypothetical protein TERM 613 1132819 - 1132805 - G 75 -9.2 -3.95153 | CCAAGGACTTAGAAA GGGCGG CCG CCACCC CACGCAGCGCGCTAA TERM 614 1132895 - 1132859 - G 78 -10.1 -3.83026 | opp_overlap 1132859 1132864 GCTGGTGATAGGAAA CAGCCTTGTCCCCTTGT TGT ACAGGGGGACACATCTG TTATCTGCGATCTCC TERM 615 1132859 - 1132895 + g 74 -10.1 -3.51365 | opp_overlap 1132859, overlap 1132864 GCTGGTGATAGGAAA CAGCCTTGTCCCCTTGT TGT ACAGGGGGACACATCTG TTATCTGCGATCTCC TERM 616 1132864 - 1132890 + g 70 -11.6 -2.53249 | opp_overlap 1132859, overlap 1132859 TGATAGGAAACAGCC TTGTCCCCTTGT TGT ACAGGGGGACAC ATCTGTTATCTGCGA AMF_964 1133597 - 1132896 - | hypothetical protein asd 1134725 - 1133715 - | aspartate-semialdehyde dehydrogenase (asd) AMF_966 1135035 - 1134727 - | hypothetical protein dnaZ 1136585 - 1135041 - | DNA polymerase III gamma subunit (dnaZ) TERM 617 1135312 - 1135325 + g 95 -2.4 -6.07627 | CCGTAGCTATACGTG GTTG CACCCT CAAC TTTTTTTTTAACAGT gapA 1137655 - 1136651 - | NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase (gapA) TERM 618 1137285 - 1137301 + g 70 -2.1 -5.03314 | overlap 1137264 1137288 TCTGCATCAGCAACC GGAGCGG ATA CCACTAC TTTTTTCACCGTGCC AMF_970 1138044 - 1138988 + | hypothetical protein TERM 619 1139193 - 1139179 - g 71 -7.2 -4.06361 | overlap 1139188 CCACAGAGAACCAAA CAAGAA ACA TTCTTG CTGAGTCTGCTAGAA elbB 1139004 - 1139660 + | Enhancing lycopene biosynthesis protein 2 ftsW 1140836 - 1139685 - | cell division protein ftsW (ftsW) TERM 620 1140234 - 1140220 - G 88 -3.5 -5.60993 | gap 1, overlap 1140221 CCGGCCAGAAAAAAA GC-CGC TATC GCGAGC ATTGATAAAAAAGAT metK 1142020 - 1140818 - | S-adenosylmethionine synthetase (metK) TERM 621 1142419 - 1142399 - g 74 -8.4 -4.11216 | opp_overlap 1142398 1142397 TCGCGATCTCCAAAA GGTCAAAA GATGT TTTTGACC GCTTTGGAGTGTGGA ubiH 1142242 - 1143408 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (ubiH) AMF_975 1144028 - 1143420 - | hypothetical protein TERM 622 1143996 - 1143963 - G 83 -3.3 -5.40464 | gap 1, overlap 1143971 GACGAGAAAGAAAAA CCTAA-CAACAATTCT GTC AAAATTGCAGATTAGG TAGGAAAGCATCATG TERM 623 1144666 - 1144654 - g 74 -7.7 -4.12456 | overlap 1144645 AGACGACTGGGAAAA CCCTA GTA TAGGG GCCTCAGGGCTTGGA glyQ 1144304 - 1145155 + | glycyl-tRNA synthetase alpha subunit (glyQ) glyS 1145157 - 1147241 + | glycyl-tRNA synthetase beta chain (glyS) TERM 624 1147485 - 1147469 - g 74 -3.7 -4.93595 | overlap 1147471 AGAAAAATTTAAAAA GATAAGC GAA GCTTATG AGGTATTAAGCAATC dnaJ 1147323 - 1148462 + | DNAJ protein (dnaJ) nadC 1149299 - 1148481 - | nicotinate-nucleotide pyrophosphorylase (nadC) TERM 625 1149695 - 1149709 + G 74 -10 -3.51235 | opp_overlap 1149694 1149692 1149695 GAGGTAAAGGAATAG CCCCTA CTA TAGGGG TTGTGCTATCTATAA AMF_980 1149358 - 1149954 + | hypothetical protein ruvC 1150443 - 1149946 - | holliday (crossover) junction endodeoxyribonuclease (ruvC) coxC 1151280 - 1150462 - | cytochrome C oxidase, subunit III (coxC) TERM 626 1150824 - 1150814 - G 73 -5.4 -4.66537 | CCCTCTAAGAGAAAA TGGT GAG ACCA TGTAACTGCAAAGCC TERM 627 1150900 - 1150921 + g 71 -5.9 -4.31164 | gap 1, overlap 1150901 ATCGACAGTTTTTAT C-CCTTTTGG CGG CCAAGAGGTG TTTATCTTCTCTGAA TERM 628 1150901 - 1150919 + g 77 -9.6 -3.75093 | overlap 1150900 TCGACAGTTTTTATC CCTTTTGG CGG CCAAGAGG TGTTTATCTTCTCTG TERM 629 1151314 - 1151300 - R 76 -7.2 -4.30576 | GTTTTAGTAGTAAAA GTAACT GGA AGTTAC AGACTAATGAGAGTA hemE 1152390 - 1151350 - | uroporphyrinogen decarboxylase (hemE) AMF_984 1152772 - 1153653 + | hypothetical protein TERM 630 1153676 - 1153660 - T 83 -9.3 -4.41895 | opp_overlap 1153664, overlap 1153661 AACCGGTAAGGAAAA GGCGGCC TGC GGCCGCT ATAGGGGCGCGCAGA TERM 631 1153675 - 1153661 - T 81 -12.8 -3.24414 | opp_overlap 1153664, overlap 1153660 ACCGGTAAGGAAAAG GCGGCC TGC GGCCGC TATAGGGGCGCGCAG AMF_985 1154158 - 1153640 - | hypothetical protein TERM 632 1153685 - 1153704 + g 71 -5.6 -4.45259 | overlap 1153664 GGCCGCTATAGGGGC GCGCAGAG CTTT CACTGTGC TTATTTTTGCCATTT TERM 633 1153972 - 1153990 + g 70 -3 -4.89567 | GGTCCTTAATGCTAT GTTGCCAT AGT AGGGCCAC TTTTCTCTTTTGCAG AMF_986 1155401 - 1154142 - | hypothetical protein TERM 634 1154185 - 1154200 + g 87 -4.6 -5.37593 | opp_overlap 1154163, overlap 1154187 CCCTCGATCGGGGGC AAGCCG AAAG CGGCTC TTTTTTCGTTTACGG TERM 635 1154187 - 1154198 + g 76 -7.2 -4.31698 | overlap 1154185 CTCGATCGGGGGCAA GCCG AAAG CGGC TCTTTTTTCGTTTAC TERM 636 1154486 - 1154467 - G 71 -6.3 -4.4261 | GGGGGAACACCAAAA GCCAGGG CGATCT CCCGGGC GGAAACATTTTTCGA TERM 637 1155762 - 1155775 + G 80 -4.5 -5.13473 | opp_overlap 1155761 GACATGGAAAACATG CCGTT CCCC GACGG TTTTTTCGATGTGGT AMF_987 1155441 - 1156241 + | hypothetical protein nadA 1156261 - 1157217 + | quinolinate synthetase A (NadA) fdxA 1157610 - 1157239 - | ferredoxin II (fdxA) ilvC 1157736 - 1158707 + | ketol-acid reductoisomerase (ilvC) infC 1159067 - 1158750 - | translation initiation factor IF-3 (infC) virD4 1161487 - 1159067 - | VirD4 protein (virD4) virB11 1162548 - 1161535 - | VirB11 protein (virB11) TERM 638 1162157 - 1162172 + g 80 -4.6 -5.19212 | CCCTGCTGGGCCACA TGGGAG AACG CACCCA TTTTTTCATAATCAT virB10 1163927 - 1162590 - | VirB10 protein (virB10) TERM 639 1163362 - 1163372 + g 70 -2.4 -5.05601 | opp_overlap 1163362 CCCAGGACGATCATA GGCG TAC CGCG TTTTTCTCTATCGTA virB9 1164774 - 1163935 - | VirB9 protein (virB9) TERM 640 1164364 - 1164346 - G 71 -10.2 -3.12999 | GTAGGCCATATCCAA CAGGGGGG AGT CCACCCTG CCGAGCTCATCCGCC virB8 1165450 - 1164761 - | VirB8 protein (virB8) ribA 1166702 - 1165569 - | GTP cyclohydrolase II (ribA) TERM 641 1166578 - 1166590 + g 75 -10.5 -3.48276 | opp_overlap 1166577 1166576 TTGTGGAGGATAACC GGCGC GCA GCGCC TTATCTCCAACACCG AMF_998 1168045 - 1166819 - | hypothetical protein TERM 642 1167995 - 1167980 - GR 76 -3.2 -5.1287 | gap 1, opp_overlap 1167980 TCCACACCCAAAAAA CCG-CGA ACG CCGTCGG TAAGTTCTAAGACAA AMF_999 1168529 - 1168002 - | hypothetical protein dapF 1169423 - 1168590 - | diaminopimelate epimerase (dapF) AMF_1003 1170151 - 1169435 - | hypothetical protein AMF_1004 1170721 - 1170293 - | hypothetical protein TERM 643 1172102 - 1172112 + G 82 -8.2 -4.56597 | overlap 1172101 CGTGTTCTGGAACGG CCCC ATG GGGG TTTTTGAGCGCGCGG pgk 1171119 - 1172315 + | phosphoglycerate kinase (pgk) xseA 1173700 - 1172507 - | exodeoxyribonuclease large subunit (xseA) AMF_1007 1174343 - 1173675 - | hypothetical protein TERM 644 1173861 - 1173851 - GH 78 -2.4 -5.24129 | TTTTGTCATAAAAAA CGAG ATG CACG CCAGGGATAAAGCGC TERM 645 1175045 - 1175065 + G 70 -9 -3.61517 | opp_overlap 1175044 1175045 1175047 GGGGCGTGCTAGAAC CAGTCGGT AACAG GCCGACTG TTATTGAGAACGGGT dapD 1174486 - 1175358 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (dapD) TERM 646 1175536 - 1175526 - g 70 -2.4 -4.91109 | CCTGTATGACAAAAA GCGG CAG CCGA TAGACCAAGCTGTAG thdF 1175359 - 1176690 + | thiophene and furan oxidation protein (thdF) dfp 1177404 - 1176847 - | pantothenate metabolism flavoprotein (dfp) TERM 647 1176958 - 1176970 + g 70 -10.5 -2.97747 | opp_overlap 1176957 CCCGCACGCCAATAT GCCGG TCT CCGGC TCTATGATCTGCACA TERM 648 1178557 - 1178529 - g 78 -2.3 -5.31275 | TGGTAGCACAAAAAA CAAACAGCTGCTC AAA GATAGGCTGCTTG CCGGGGATATATGCA TERM 649 1179091 - 1179071 - g 74 -3.9 -4.96848 | opp_overlap 1179074 1179075 1179080, overlap 1179073 1179074 CCGGGGACATAAAAA TACTCGTGG CAA CCACGGTTA TCGAGGTAGGTATTG recG 1177414 - 1179513 + | ATP-dependent DNA helicase (recG) AMF_1013 1179695 - 1180675 + | NADH-ubiquinone oxidoreductase, putative purF 1182223 - 1180814 - | amidophosphoribosyltransferase (purF) TERM 650 1181362 - 1181402 + g 82 -7.6 -4.67353 | gap 1, overlap 1181364 CCACCATATCTACAT TGTCGGGAGGAGGGCTTTC TACT GCAAGCTCTGC-CCCGATA TTTTTACGTGCCTCA TERM 651 1181364 - 1181400 + g 72 -8 -3.95214 | gap 1, overlap 1181362 ACCATATCTACATTG TCGGGAGGAGGGCTTTC TACT GCAAGCTCTGC-CCCGA TATTTTTACGTGCCT pth 1182934 - 1182374 - | peptidyl-tRNA hydrolase (pth) rplY 1183595 - 1182939 - | 50S ribosomal protein L25 (rplY) TERM 652 1187567 - 1187588 + r 71 -10.3 -3.16055 | CCGCTGGTACGGGTG CTGAGAAAT TTTT ATTTCTCAG TTGCTAAGACCTTTA comF 1188533 - 1187784 - | Competence protein F (comF) dapE 1189674 - 1188472 - | succinyl-diaminopimelate desuccinylase (dapE) kefB 1191535 - 1189844 - | glutathione-regulated potassium-efflux system protein KEFB (kefB) TERM 653 1190984 - 1190953 - G 79 -5 -4.96848 | gap 1, overlap 1190954 1190956 TTCCTGATATAAAAA TCAGCGCAAGTGCCG CCA CGGC-CTTGAGCAGC GCATGCATTAGCGAC TERM 654 1190981 - 1190956 - G 72 -9.7 -3.35962 | gap 1, overlap 1190954 1190953 CTGATATAAAAATCA GCGCAAGTGCCG CCA CGGC-CTTGAGC AGCGCATGCATTAGC AMF_1023 1192112 - 1191549 - | hypothetical protein TERM 655 1191587 - 1191605 + g 70 -8.8 -3.63968 | opp_overlap 1191577 1191586 AGCAACCGATACTAG GTACCTGG TCA CCCGGTAC TTTGCCAGTTTCCGC TERM 656 1191927 - 1191944 + g 91 -11.3 -4.37658 | opp_overlap 1191925 CGCCATCAGCAACTT CACCTCG CGCA CGAGGTG TTTTATCAAGGCCTT TERM 657 1192086 - 1192063 - G 71 -6.6 -4.13767 | overlap 1192066 GCTTTGAGCCGAAAA TCACGCGCGG TAAA CCCCGCGTCA AGCGTAGGAGTAACT TERM 658 1192224 - 1192210 - R 79 -11.4 -3.55203 | opp_overlap 1192201, overlap 1192200 1192199 1192201 AAAATGCGGCTGAAA GCAGCC CTT GGCTGC AAAATTCAAACCACC AMF_1024 1192786 - 1192340 - | hypothetical protein pdhB 1193942 - 1192917 - | pyruvate dehydrogenase E1 beta subunit precursor (pdhB) TERM 659 1193704 - 1193692 - G 70 -9.1 -3.54638 | overlap 1193682 1193700 1193701 ACAATCGGCTTTAAA CCGCA AAA TGCGG CCCCTACCGCGATGC AMF_1026 1196838 - 1194007 - | hypothetical protein TERM 660 1194784 - 1194794 + g 74 -2.4 -5.08824 | overlap 1194780 CTGTGCTAAATCCGT GACG CTG CGGC TTTTTTCAGTCAGAG TERM 661 1195809 - 1195833 + g 70 -11.5 -2.50492 | opp_overlap 1195808, overlap 1195808 TGCGTGATACAAATT GCTGCATTTGG AGG TCGAATGCAGC CTGTTGATGCTCGTC tldD 1197378 - 1198799 + | tldD protein ychF 1200323 - 1199229 - | GTP-binding protein YchF, putative TERM 662 1199791 - 1199803 + g 77 -10.5 -3.60818 | overlap 1199801 CCAATAGCGCTCCTT GCGGG CTG CCCGC TTTCAAGCGTTTTGA ispF 1201094 - 1200504 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthetase (IspF) ispD 1202105 - 1201344 - | 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase (ispD)