TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.573267 %AT, 972243 nt, 6760 terms. Intergenic: 0.603843 %AT, H2T: 315421 nt, 2432 terms; T2T: 118841 nt, 1565 terms; H2H: 93130 nt, 1265 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|88606690|ref|NC_007797.1| Anaplasma phagocytophilum HZ, complete genome (length 1471282) TERM 1 1712 - 1701 - g 90 -5.8 -5.47218 | GGGGAGCTAAAAAAA TGCC TTCT GGCA GCTACTGCACCAATG polA 122 - 2683 + | DNA polymerase I TERM 2 3424 - 3395 - g 73 -10.1 -2.93492 | gap 1, opp_overlap 3394 3392 3396 3403 3405, overlap 3394 GATGATAGAGGAAAG CTCATCAACCGCGA AAA TCGCTGTTGATG-G TGGTGTTTCAACGGA TERM 3 3396 - 3424 + G 89 -12.5 -2.84325 | opp_overlap 3395 3394, overlap 3394 3392 3403 3405 ATGATAGAGGAAAGC TCATCAACCGCGA AAA TCGCTGTTGATGG TGGTGTTTCAACGGA rpe 2838 - 3548 + | ribulose-phosphate 3-epimerase TERM 4 3643 - 3657 + G 76 -2.8 -5.36441 | overlap 3634 3632 GACTGCTCATCCCTG TAGGCA GGG TGGCTA TTTTTTGTGTAAAGG APH_0003 3624 - 4358 + | putative ABC transporter, permease protein APH_0004 4365 - 5090 + | ABC transporter, ATP-binding protein TERM 5 6142 - 6115 - f 70 -2.8 -5.0916 | opp_overlap 6115, overlap 6125 CTTTCAATAGAAAAA TTGAACTACA GAAGACAA TGTTGTTCAA TGGCTTCGATGGCAT APH_0005 6151 - 7008 + | hypothetical protein APH_0006 7046 - 7711 + | isoprenoid biosynthesis protein TERM 6 7923 - 7910 - T 70 -3.1 -4.84492 | overlap 7911 7912 TTAATTACAAGAAAA CTCTC TATT GAGAA TTAGAGACAGGTCTA metK 9073 - 7895 - | S-adenosylmethionine synthetase TERM 7 8908 - 8922 + g 71 -10 -2.57211 | opp_overlap 8907, overlap 8907 CTATGATAACATTAT CCCTTG TTA CAAGGG CTTCTACCGCAACAT TERM 8 9819 - 9806 - g 80 -3.9 -5.26875 | TGCCGAAGGAAAAAA TTCTA GGTT TAGAA ATAGCTTATCTCTAA APH_0009 9321 - 10499 + | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase APH_0010 11313 - 11417 + | hypothetical protein APH_0011 12109 - 11486 - | hypothetical protein glyQ 12403 - 13254 + | glycyl-tRNA synthetase subunit alpha TERM 9 14182 - 14215 + G 71 -4.7 -4.72272 | gap 1, opp_overlap 14184, overlap 14184 AATAAAAATTCATGA AATGGTAT-TGAGAGC AAG GCTTTCAGATGCCATG TTTTTAATAGAAAAG TERM 10 14184 - 14213 + G 72 -7.3 -3.98256 | gap 1, opp_overlap 14184, overlap 14182 TAAAAATTCATGAAA TGGTAT-TGAGAGC AAG GCTTTCAGATGCCA TGTTTTTAATAGAAA glyS 13256 - 15361 + | glycyl-tRNA synthetase, beta subunit dnaJ 15439 - 16587 + | chaperone protein DnaJ nadC 17437 - 16610 - | nicotinate-nucleotide pyrophosphorylase TERM 11 17885 - 17897 + G 87 -5.5 -5.47431 | CCCATTAAATCCACT CATGC TGT GCGTG TTTTTTATATCTTGG APH_0017 17529 - 18107 + | hypothetical protein ruvC 18600 - 18109 - | crossover junction endodeoxyribonuclease RuvC APH_0019 19462 - 18605 - | cytochrome c oxidase, subunit III TERM 12 19477 - 19465 - R 77 -6.3 -4.54449 | AGAGCGTAGACAAAA CTTAC AGA GTAAG GTGTAAAAGTGTCAA hemE 20556 - 19525 - | uroporphyrinogen decarboxylase APH_0021 20942 - 21811 + | putative hemolysin APH_0022 22322 - 21852 - | HK97 family phage prohead protease APH_0023 23530 - 22352 - | HK97 family phage portal protein TERM 13 23147 - 23183 + g 74 -4.6 -4.7497 | gap 1, opp_overlap 23155, overlap 23149 23171 TTCTACTCTATCAGG ACGCAGAAGATGTAATT CCTG AATTACATCTTC-GCTA TTTTTAATGGATAAG TERM 14 23149 - 23181 + g 100 -11.6 -3.99327 | gap 1, opp_overlap 23155, overlap 23147 23171 CTACTCTATCAGGAC GCAGAAGATGTAATT CCTG AATTACATCTTC-GC TATTTTTAATGGATA TERM 15 23176 - 23155 - G 71 -8.9 -3.38272 | opp_overlap 23149 23147 23171 TATCAGGACGCAGAA GATGTAATT CCTG AATTACATC TTCGCTATTTTTAAT APH_0024 23655 - 23527 - | hypothetical protein APH_0025 23719 - 24477 + | putative biotin synthesis protein BioC nadA 24534 - 25499 + | quinolinate synthetase fdxA 25914 - 25534 - | ferredoxin APH_0028 25886 - 26086 + | hypothetical protein APH_0031 28385 - 28501 + | hypothetical protein APH_0032 30648 - 28789 - | hypothetical protein TERM 16 30425 - 30411 - G 71 -10 -2.63382 | overlap 30410 TGTTATAGGGAGAAT GCTTGC ATC GCAAGC TGAAATTAGCTACGT APH_0033 31098 - 30808 - | hypothetical protein TERM 17 31507 - 31488 - R 89 -10 -4.2074 | gap 1 GTCGCAATATATAAA CGACG-GGC CTG GCCACGTCG TACTCAATCCCGAAA trpS 32634 - 31639 - | tryptophanyl-tRNA synthetase grpE 33276 - 32641 - | co-chaperone GrpE TERM 18 34376 - 34386 + G 85 -4 -5.42259 | opp_overlap 34372 34376 AAGTTTGTAAAGACA GATA CGC TATC TTTTTTTGACGATAC ribD 33356 - 34450 + | riboflavin biosynthesis protein RibD pyrG 36139 - 34514 - | CTP synthetase secG 36475 - 36152 - | preprotein translocase subunit SecG xerD 36738 - 37673 + | tyrosine recombinase XerD APH_0041 38714 - 38037 - | ABC transporter, ATP-binding protein TERM 19 39305 - 39331 + G 71 -6.6 -4.19238 | overlap 39306 CAAGAGGTAATTACG TTGCTGTGATAT CAA ATGGCACAGCAG TTTTGGGCTTAGGAA APH_0042 39100 - 41355 + | malic enzyme APH_0043 41662 - 44388 + | hypothetical protein TERM 20 45474 - 45493 + G 71 -4.3 -4.83169 | gap 1 GAGCATATTCATCAT CACCGGCA TTTAT TG-CGGTG TTTTTATCAGGCACT APH_0044 44756 - 46243 + | putative monovalent cation/H+ antiporter subunit D TERM 21 47295 - 47323 + T 93 -9.8 -4.95896 | gap 1, overlap 47296 GCAGGCACCGCGCTG T-TGAGAGAAGAG CATG CTCTTCTCTCATA TTTTTATAAGTTTCT TERM 22 47296 - 47321 + T 100 -14.9 -4.08693 | overlap 47295 CAGGCACCGCGCTGT TGAGAGAAGAG CATG CTCTTCTCTCA TATTTTTATAAGTTT APH_0045 47834 - 47382 - | mce-related protein APH_0046 48333 - 48028 - | hypothetical protein APH_0047 48447 - 48908 + | transcriptional regulator NrdR TERM 23 49092 - 49113 + T 93 -11.6 -4.24283 | overlap 49089 TCTTACAGGTTGTGC CCAGCCTC TGAAGC GAGGCTGG TTGTTTGTATTCGTT APH_0049 55959 - 49150 - | hypothetical protein TERM 24 51625 - 51613 - G 84 -2.6 -5.59357 | ATCAGACGAAAAAAA CAGC GATGT GCCG TCAGTGATGATGTAG TERM 25 52559 - 52572 + g 75 -3.1 -5.08824 | overlap 52560 TTGGGCTGGTCTGGA TCTAC GAAT GTAGG TTTTTTACCTGAAGC TERM 26 53107 - 53086 - G 70 -5.3 -4.51812 | gap 1, opp_overlap 53086 GTCTACAATAATAAA TCCTGT-ATA TTT TATGACAGGA TTTGATTGGGGTTCG TERM 27 53391 - 53401 + g 82 -2.4 -5.64873 | CAATCTCTAAGTTTG CTCC CAA GGTG TTTTTTGTTGTTGGG TERM 28 56304 - 56290 - H 74 -5 -4.7373 | opp_overlap 56290, overlap 56275 GCATTTTATGAAAAA GCCATT CAA AATAGC GTATTTACCGCATAG TERM 29 57478 - 57460 - g 76 -10.4 -3.05343 | overlap 57462 GGGACATGCTCAAGA TAGGGATT ATG AATCCCTA AAATATAGTATGGGT APH_0050 56495 - 60628 + | hypothetical protein APH_0051 61001 - 62011 + | iron-binding protein TERM 30 62042 - 62066 + G 100 -12.2 -3.86202 | GTCTTGGAAATTTTA GTTTGCCCCC TCACT GGGGGTAAAC TTTCGTATGATACAG APH_0052 62012 - 62227 + | hypothetical protein TERM 31 62247 - 62275 + T 73 -10.3 -2.83403 | opp_overlap 62251, overlap 62246 TTACTCAGGAAACTA ACAAGCAGCCATT AAC AATGGCTGCTAGA CTTTAGTAAGAAACC TERM 32 62271 - 62251 - T 100 -14.1 -3.91541 | opp_overlap 62247 62246 TCAGGAAACTAACAA GCAGCCATT AAC AATGGCTGC TAGACTTTAGTAAGA APH_0053 63588 - 62305 - | major facilitator family transporter TERM 33 63041 - 63025 - G 70 -5.1 -4.5032 | overlap 63037 63038 GATACCAATAACAAA TCCCACT ATG AACGGGA TTCTCCATCCCCAGA rpsP 63916 - 64206 + | 30S ribosomal protein S16 TERM 34 64370 - 64407 + F 93 -8.5 -5.33921 | gap 1, overlap 64380 64390 CAGGTGTTGTTTATT CGGTTATT-CGGGGTAGT GCT GCTACCCTGTGGTAGCCG TTTTTTAGTTCATTT TERM 35 64442 - 64460 + F 71 -9.6 -2.82516 | overlap 64445 TGGTCAAGTTTTTTG CAACGGTG GAA TACCGTTG TGTCGTAATGGCGAA TERM 36 64552 - 64567 + F 76 -7.6 -4.17416 | opp_overlap 64543 64541, overlap 64541 64539 ATAAGACCTCTCATT CAAGAG AGGA CTCTTG TTGTTTGTATACTCT APH_0055 64713 - 64838 + | hypothetical protein APH_0056 65668 - 64958 - | short chain dehydrogenase/reductase family oxidoreductase APH_0057 65755 - 65949 + | hypothetical protein APH_0058 66297 - 67322 + | S-adenosylmethionine synthetase pheS 68926 - 67898 - | phenylalanyl-tRNA synthetase, alpha subunit rplT 69293 - 68907 - | 50S ribosomal protein L20 rpmI 69517 - 69317 - | 50S ribosomal protein L35 APH_0062 69911 - 70477 + | hypothetical protein APH_0063 70474 - 70635 + | hypothetical protein rho 70587 - 71945 + | transcription termination factor Rho lpdA-1 73443 - 72028 - | dihydrolipoamide dehydrogenase APH_0066 73914 - 73558 - | DnaJ domain-containing protein TERM 37 73830 - 73843 + g 73 -3.7 -5.06414 | CTTCGCCGAAACTCG CGCGC ATCA GCACG TTTTTGTTGAAAAAA APH_0067 74057 - 74623 + | NifU domain-containing protein TERM 38 74984 - 75007 + T 83 -5.3 -5.18726 | opp_overlap 74987, overlap 74987 ATTTTTGATGAGGCG AAAGCCTCA AGTGAA TGAGGCTTC TTTTTCTTATAAAAG TERM 39 74987 - 75004 + T 81 -7 -4.68512 | opp_overlap 74987, overlap 74984 TTTGATGAGGCGAAA GCCTCA AGTGAA TGAGGC TTCTTTTTCTTATAA APH_0068 77053 - 75032 - | hypothetical protein TERM 40 75147 - 75157 + g 74 -4.6 -4.75288 | GTCTCGCTTTGAAGT GCGG GTG CTGC TTTCTTTTCATCTCG thiS 77229 - 77438 + | thiamine biosynthesis protein ThiS thiG 77472 - 78257 + | thiazole synthase APH_0071 78914 - 78498 - | hypothetical protein gltX 79102 - 80454 + | glutamyl-tRNA synthetase APH_0074 80911 - 82092 + | hypothetical protein APH_0075 82103 - 82651 + | putative methyltransferase TERM 41 83816 - 83833 + T 85 -4.1 -5.64321 | overlap 83818 CACGTCATCTTATCT TACACTG TGCG CAGTGCA TTTTTATTTTCTTCT APH_0077 84916 - 83993 - | auxin efflux carrier family protein APH_0078 85330 - 85022 - | putative oxidoreductase xseB 85386 - 85613 + | exodeoxyribonuclease VII, small subunit trx 86379 - 86047 - | thioredoxin virB9-1 87207 - 86392 - | type IV secretion system protein VirB9 TERM 42 87371 - 87399 + r 79 -5.3 -5.09521 | opp_overlap 87371 CACATTGTCTATTAA TACGGATAAATCC ATA GGATACATCTGTA TTTTTGCTTTGTTCA pdhA 88603 - 87566 - | pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit APH_0083 89504 - 88626 - | alpha/beta fold family hydrolase TERM 43 90373 - 90361 - R 71 -6.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGTGA GGGG AGTGAAATAGAACCT APH_0087 94477 - 94007 - | putative phosphoribosylglycinamide formyltransferase, truncation guaB 96002 - 94542 - | inosine-5'-monophosphate dehydrogenase ppnK 96890 - 96078 - | inorganic polyphosphate/ATP-NAD kinase rpmE 97121 - 96900 - | 50S ribosomal protein L31 TERM 44 97596 - 97560 - g 74 -4.6 -4.7497 | gap 1, opp_overlap 97567, overlap 97540 97562 CTTATCCATTAAAAA TAGC-GAAGATGTAATT CAGG AATTACATCTTCTGCGT CCTGATAGAGTAGAA TERM 45 97594 - 97562 - g 100 -11.6 -3.99327 | gap 1, opp_overlap 97567, overlap 97540 97560 TATCCATTAAAAATA GC-GAAGATGTAATT CAGG AATTACATCTTCTGC GTCCTGATAGAGTAG TERM 46 97567 - 97588 + G 71 -8.9 -3.38272 | opp_overlap 97540 97562 97560 ATTAAAAATAGCGAA GATGTAATT CAGG AATTACATC TTCTGCGTCCTGATA APH_0091 97192 - 97806 + | hypothetical protein fabD 97971 - 98930 + | malonyl CoA-acyl carrier protein transacylase tmk 98947 - 99606 + | thymidylate kinase TERM 47 100213 - 100223 + G 70 -5.4 -4.45068 | opp_overlap 100213 AGCACGGATGGAAAA CAGT ATT ACTG TTTCTTATTGGAAGT TERM 48 100468 - 100481 + G 71 -6.7 -4.22375 | AGTATGCCTCAATTT TACCG TCTA CGGTA TTTGTTGGGTCATGT APH_0094 99774 - 100949 + | hypothetical protein APH_0095 101121 - 101219 + | hypothetical protein APH_0096 102407 - 101682 - | Tim44-like domain-containing protein secB 102441 - 102917 + | preprotein translocase subunit SecB TERM 49 103102 - 103126 + G 82 -8.5 -4.26076 | opp_overlap 103115 CTCTCTGGAGGCGAG GCTGTTGAGCT AAC GGCGCAGCAGC TTTTGATGAGACTAC APH_0098 102988 - 103671 + | hypothetical protein TERM 50 103748 - 103764 + F 77 -6.5 -4.53765 | opp_overlap 103740, overlap 103751 GTGATAAGGGCTTGT GAACCCC AGC GGGGTTA TTTTGTGCTGTGTGT TERM 51 103751 - 103761 + F 80 -8.2 -4.36649 | opp_overlap 103740, overlap 103748 ATAAGGGCTTGTGAA CCCC AGC GGGG TTATTTTGTGCTGTG APH_0099 103886 - 104110 + | hypothetical protein APH_0100 104079 - 104225 + | hypothetical protein APH_0101 105669 - 104398 - | M16 family peptidase APH_0102 105977 - 106078 + | hypothetical protein TERM 52 106285 - 106304 + G 73 -10 -3.06009 | overlap 106277 GGTAGGAGTTCGGGG GCGTTTGC AGCC GCAGACGC TATTGGAACGTTTTC APH_0103 106210 - 107586 + | 2-nitropropane dioxygenase family oxidoreductase APH_0104 108243 - 107950 - | uridylate kinase, truncation APH_0105 108932 - 109030 + | hypothetical protein ribE 109833 - 109222 - | riboflavin synthase subunit alpha mfd 113817 - 110398 - | transcription-repair coupling factor TERM 53 110440 - 110450 + g 70 -2.6 -5.07486 | opp_overlap 110440 GGGTGTATGAGTAAG TAAA CTG TTTA TTTTTCTTAGACATG TERM 54 112002 - 112024 + g 79 -8.5 -4.13282 | ATATTAGCCTGTCCA TGACTTTGC CGCGT GCAAGGTCA TTTTCAACATCTGCT TERM 55 113129 - 113170 + g 79 -3.1 -5.31456 | gap 1, overlap 113121 113130 GGGTTGTTGCTTCGT AGATGGGAGCATTTCTCAGA GAA TCT-AGCAATGTTTCCGTCA TTTTTTATCAATTCA APH_0108 113993 - 113823 - | hypothetical protein rnhA 114020 - 114472 + | ribonuclease H1 TERM 56 117486 - 117458 - g 78 -10.4 -3.30651 | opp_overlap 117465, overlap 117456 TCTTAGATTACAAGA TGAAGCAGGAGA GCGAG TCTTCTGCTTCA CATCAGCATGATAAA APH_0110 114511 - 117510 + | acetamidase/formamidase family protein pyrH 117715 - 118449 + | uridylate kinase frr 118458 - 119012 + | ribosome recycling factor TERM 57 119951 - 119967 + G 70 -7.9 -3.61244 | overlap 119947 CATTCCGGCTATTAG CCCTGGT AAA ACCTGGG TTGGTTTATGGGCTG APH_0113 119550 - 120257 + | putative phosphatidate cytidylyltransferase APH_0114 120721 - 120930 + | hypothetical protein TERM 58 121290 - 121305 + F 79 -3.2 -5.4505 | GCTGCAGTGTATTTA CTAGCT AGGT AGCTCG TTTTTTATTAGCCCG APH_0116 122729 - 122941 + | hypothetical protein APH_0117 126874 - 123386 - | hypothetical protein TERM 59 124091 - 124080 - G 71 -4.4 -4.82901 | opp_overlap 124063 TTTTGGTTAGAAAAA GGTT TAGG AACC ATAGTAGTACGCGGA TERM 60 125552 - 125562 + g 91 -6.8 -5.4659 | AGTTTTCATATGCCA CACC TCA GGTG TTTTTGTTTGTCTTC TERM 61 127011 - 127000 - R 75 -3 -5.33866 | TAAATTTATAAAAAA GTTT ACCA AAAC ATGATGAGCATGATA APH_0118 127306 - 127175 - | hypothetical protein purC 128075 - 127341 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 62 128495 - 128482 - g 71 -2.3 -5.08824 | TGTTGAGCGAAAAAA TGCAG CCAC CGGCA CGACTATTCACGGCA TERM 63 128694 - 128684 - g 70 -5.4 -4.56367 | CACGCTAGAAATAAA TTCC CTG GGAA GTAGCGAGTGCATGA hisS 128190 - 129452 + | histidyl-tRNA synthetase APH_0121 129534 - 129689 + | hypothetical protein APH_0122 130672 - 129926 - | thiol:disulfide oxidoreductase TERM 64 131483 - 131495 + G 77 -6.3 -4.58395 | TTTGCTGTTTTCTCT GCTAT GGC ATAGC TTTTTAGAAAGTAGA APH_0123 130983 - 131969 + | putative cytochrome oxidase assembly protein APH_0124 132482 - 132381 - | hypothetical protein ccmA 133132 - 132512 - | cytochrome c biogenesis protein CcmA APH_0126 133214 - 133116 - | hypothetical protein APH_0127 133804 - 133682 - | hypothetical protein APH_0128 133932 - 134093 + | hypothetical protein APH_0129 134885 - 134208 - | tubulin/FtsZ family protein dcd 135556 - 134999 - | deoxycytidine triphosphate deaminase APH_0131 136114 - 135677 - | hypothetical protein APH_0133 137537 - 137430 - | hypothetical protein APH_0135 139122 - 139391 + | CSD family cold shock protein APH_0136 139419 - 141521 + | nitrogen regulation protein APH_0137 141529 - 142674 + | putative ribonuclease D ligA 144824 - 142791 - | DNA ligase, NAD-dependent APH_0139 145159 - 144830 - | glutaredoxin-related protein APH_0140 145388 - 145152 - | BolA family protein APH_0141 146121 - 145621 - | putative thiol:disulfide oxidoreductase TERM 65 145737 - 145718 - G 74 -4.2 -5.07652 | TTGTTGAAAATAAAA GTTTCAGG TACT CCCGTAAC CCCAAATGCCTTTGC APH_0142 147346 - 146561 - | P44-87 outer membrane protein, truncation APH_0144 148039 - 147836 - | P44 outer membrane protein, C-terminal fragment APH_0145 149309 - 148302 - | P44-8 outer membrane protein APH_0146 149391 - 149266 - | P44 outer membrane protein, N-terminal fragment APH_0147 150308 - 150021 - | guanylate kinase, truncation APH_0148 150665 - 150757 + | hypothetical protein APH_0149 151193 - 153772 + | TRAP transporter, 4TM/12TM fusion protein APH_0150 153782 - 154381 + | CvpA family protein TERM 66 154405 - 154431 + F 100 -6.6 -5.84381 | overlap 154408 GTTCTTGATTGTGTC TTGCTCTGGTAT ATA ATACCTGAGTGA TTTTTTTGTTCATGA TERM 67 154408 - 154428 + F 72 -8.3 -3.60957 | overlap 154405 CTTGATTGTGTCTTG CTCTGGTAT ATA ATACCTGAG TGATTTTTTTGTTCA rpsF 154458 - 154787 + | 30S ribosomal protein S6 rpsR 154798 - 155088 + | 30S ribosomal protein S18 rplI 155112 - 155729 + | 50S ribosomal protein L9 glyA 155752 - 157029 + | serine hydroxymethyltransferase APH_0155 157023 - 157115 + | hypothetical protein APH_0156 157200 - 157577 + | frataxin-like domain-containing protein APH_0157 157593 - 159329 + | putative ABC transporter, ATP-binding protein/permease protein sdhA 159802 - 161616 + | succinate dehydrogenase flavoprotein subunit sdhB 161631 - 162419 + | succinate dehydrogenase iron-sulfur subunit APH_0160 162420 - 162578 + | putative thymidylate synthase, flavin-dependent, truncation sdhA 162580 - 164394 + | succinate dehydrogenase flavoprotein subunit sdhB 164409 - 165197 + | succinate dehydrogenase iron-sulfur subunit thyX 165198 - 166064 + | FAD-dependent thymidylate synthase TERM 68 166512 - 166532 + F 71 -7 -4.04719 | opp_overlap 166521, overlap 166525 166527 CTGTGGTATTGTTTC TTGTGATA ATGTC TATCACAA TTTGTGATATATCAT TERM 69 166572 - 166585 + G 77 -3.8 -5.21709 | ATGCTCCAGGTCTTC CGCA AATAGG TGCG TTTTTTGGTGTAGCC APH_0164 166520 - 167689 + | bicyclomycin resistance protein TERM 70 167739 - 167725 - T 71 -7.2 -3.91084 | overlap 167731 CGAGGTCCAATCAAA GCAAAT TCG ATTTGC CGAGACTAAAGTTCT glyQ 168739 - 167888 - | glycyl-tRNA synthetase subunit alpha TERM 71 168845 - 168831 - R 80 -10 -3.68359 | overlap 168825 TGGTGAAAATGAGAA GCAGCA GTT TGCTGC GGATCATCATGCAAA ruvB 169856 - 168867 - | Holliday junction DNA helicase B ruvA 170428 - 169853 - | Holliday junction DNA helicase RuvA ccmC 171132 - 170425 - | heme exporter protein CcmC APH_0169 171299 - 171409 + | hypothetical protein gmk 171559 - 172191 + | guanylate kinase p44-45 174024 - 172921 - | P44-45 outer membrane protein TERM 72 174072 - 174042 - R 100 -22.8 -3.04501 | overlap 174045 ACTAACTCCCTAATA GAAGCGGGGTAAGT TTG ACTTACCCCGCTTC CAACAAACCACCTTA TERM 73 174069 - 174045 - R 100 -18.7 -3.66556 | overlap 174042 AACTCCCTAATAGAA GCGGGGTAAGT TTG ACTTACCCCGC TTCCAACAAACCACC APH_0172 174288 - 174085 - | P44 outer membrane protein, C-terminal fragment APH_0173 174412 - 174573 + | hypothetical protein APH_0174 175531 - 174551 - | P44-55 outer membrane protein, silent TERM 74 174854 - 174869 + g 80 -4.6 -5.18726 | ACTGCTCTTCCCAGC CTGACC AGTA GGCCAG TTTTTATTCTCCGAC folD 175932 - 176846 + | methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase APH_0177 177157 - 178125 + | hypothetical protein APH_0178 179112 - 178252 - | alpha/beta fold family hydrolase TERM 75 178345 - 178361 + g 76 -2.9 -5.26316 | opp_overlap 178347, overlap 178347 TATTAAGTGCACTGA AACGTTC TTG GAGCGTA TTTTTTCTGCAATAG APH_0179 179928 - 179245 - | hypothetical protein TERM 76 179457 - 179439 - G 70 -6 -4.2558 | opp_overlap 179439, overlap 179442 TACCGTGTATCAAAA CTATTGGA CAA TCCAATGG TATCTCAGGCTTATT TERM 77 180068 - 180036 - R 71 -9.9 -2.79501 | TATATGCTCAGTATA TCGCCATTTATCGCG GAT CGCAACACATGGCAA ACTCATATGGAAGCC cycM 180744 - 180220 - | cytochrome C, membrane-bound APH_0181 182551 - 181049 - | NADH-ubiquinone/plastoquinone oxidoreductase family protein APH_0182 182970 - 182839 - | hypothetical protein TERM 78 183789 - 183779 - g 75 -5.4 -4.75289 | overlap 183772 TATCAGAACATAAAA CTCA TGA TGAG AGCAGGTGATCAATA APH_0183 183662 - 183805 + | hypothetical protein APH_0184 183989 - 183810 - | hypothetical protein ppdK 186767 - 184143 - | pyruvate phosphate dikinase TERM 79 185647 - 185633 - G 71 -7 -4.1899 | GTATTGGATGGAAAA GCCCCC CAA GGGTGC TAGCATCAATACGAA APH_0186 187473 - 187072 - | hypothetical protein APH_0187 188172 - 187549 - | HAD family hydrolase APH_0188 188371 - 188637 + | hypothetical protein APH_0189 188618 - 188860 + | hypothetical protein aspS 191168 - 189372 - | aspartyl-tRNA synthetase APH_0191 191385 - 191549 + | hypothetical protein APH_0192 191555 - 192151 + | putative osmotically inducible protein gshB 192161 - 193078 + | glutathione synthetase APH_0194 193127 - 193240 + | hypothetical protein APH_0195 193321 - 194097 + | cell division protein FtsQ APH_0196 194341 - 195729 + | nitrogen assimilation regulatory protein APH_0197 195782 - 195916 + | hypothetical protein gpsA 197319 - 196345 - | glycerol-3-phosphate dehydrogenase (NAD(P)+) TERM 80 196688 - 196710 + g 72 -6.2 -4.36262 | overlap 196690 CGCACTACTACCATG GCGCTAGCGT TGT ACCCTAGCCC TTTTCCTATGACTAT xerC 197660 - 198619 + | tyrosine recombinase XerC TERM 81 199324 - 199334 + G 76 -6.8 -4.49337 | opp_overlap 199323, overlap 199328 CTATGCAAAAGTGAC CACG CTA CGTG TTTTGTAGGTTGTGG APH_0201 199087 - 199386 + | hypothetical protein purM-1 200583 - 199549 - | phosphoribosylaminoimidazole synthetase APH_0203 200705 - 201325 + | hypothetical protein TERM 82 201636 - 201646 + G 82 -3.2 -5.45652 | TTTTGTGGTTCTATG CCGT GGG ATGG TTTTTTCTTCAGGGT APH_0204 201576 - 201680 + | hypothetical protein APH_0206 203139 - 202252 - | hypothetical protein APH_0207 203715 - 203332 - | iojap-related protein TERM 83 204035 - 204014 - g 84 -2.9 -5.64006 | overlap 204015 204021 ACGTAATCAAAAAAA TCAGCAAGC CTCT GTTTGCTGC GGCTCACGTGAATGT TERM 84 204836 - 204861 + G 70 -9.9 -2.52834 | gap 1, overlap 204835 TAGAAGCGTGTATTA CTGACTACAAAG CAG CTTTG-AGTCAG ATTCCTGATGACATG APH_0208 203905 - 205179 + | M48 family peptidase TERM 85 205764 - 205774 + G 76 -6.8 -4.49337 | opp_overlap 205763, overlap 205768 CTATGCAAAAGTGAC CACG CTA CGTG TTTTGTAGGTTGTGG APH_0209 205320 - 205826 + | hypothetical protein purM-2 207023 - 205989 - | phosphoribosylaminoimidazole synthetase APH_0211 207715 - 207401 - | phosphoribosylformylglycinamidine synthase domain-containing protein folK 208972 - 208442 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 86 209076 - 209062 - R 75 -5.8 -4.81212 | TGTAGGATAATAAAA TTTGTT AAT AACAAA CAGTAGATCAATGAA APH_0213 212664 - 209659 - | putative phosphoribosylformylglycinamidine synthase II TERM 87 211328 - 211340 + g 77 -4.8 -4.96848 | ACCACTATATAATCT CCGT TTTTC ACGG TTTTTATATGAGCAG TERM 88 212952 - 212972 + r 78 -2.5 -5.48213 | GCATTAAAATAGGTA TGTATGTCC AGA GCGCATGCA TTTTTGTTTTAGATG APH_0215 214863 - 214429 - | hypothetical protein TERM 89 215073 - 215091 + H 82 -8.8 -4.14392 | TGTTACCACGAGTAC GGTGCGCT CTT ACCGCACC TTTTCACCCTTACCC APH_0217 215371 - 215835 + | hypothetical protein TERM 90 215877 - 215855 - T 76 -7 -4.31433 | overlap 215873 CACGTTCATAAGAAA GCCCATAGCA ATA TACTACAGGC ACGTATGATACTTCC bioB 217472 - 216504 - | biotin synthase TERM 91 216660 - 216648 - G 74 -4.1 -5.03314 | TGCACCTGCAAAAAA GCATA AAG CATGC ATCTCTTCCGTCATG APH_0219 217740 - 217459 - | hypothetical protein APH_0220 218337 - 217882 - | hypothetical protein TERM 92 218473 - 218494 + r 100 -13.1 -4.49364 | opp_overlap 218473 CGGGGAAGCGAGGAA TTCCATGCC AATT GGCATGGAA TTTATTATTGGATTT TERM 93 218494 - 218473 - R 91 -13.1 -3.21912 | opp_overlap 218473 CGGGGAAGCGAGGAA TTCCATGCC AATT GGCATGGAA TTTATTATTGGATTT APH_0221 219496 - 218828 - | putative lipoprotein NlpD glpX 219584 - 220519 + | fructose 1,6-bisphosphatase II APH_0223 220888 - 220682 - | hypothetical protein APH_0224 223120 - 221234 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 94 221843 - 221833 - G 79 -6.8 -4.66609 | opp_overlap 221833 CACGTGATGTAAAAA GCCT ATA AGGC TCGCTTGTACCTAAT APH_0225 223222 - 224004 + | putative phosphoribosylformylglycinamidine synthase I APH_0226 224371 - 224201 - | P44 outer membrane protein, C-terminal fragment APH_0227 225204 - 225335 + | hypothetical protein purN 228014 - 227379 - | phosphoribosylglycinamide formyltransferase pepA 229552 - 228020 - | leucyl aminopeptidase APH_0232 229965 - 230600 + | dioxygenase family protein TERM 95 230624 - 230609 - f 78 -2.6 -5.39721 | overlap 230610 CGAGTAGATAAAAAA CGTAAA AGCT TTTACA GTGACCTCTACCCTG TERM 96 231310 - 231324 + G 72 -7.8 -3.77087 | TCTTTCTTCGGTTTA CCGCCT GAA AGGTGG TTTGCCTCTTCGGTA APH_0233 230741 - 231637 + | hypothetical protein TERM 97 231773 - 231796 + F 85 -6.8 -5.0809 | overlap 231778 CTGGCGCCTATTTAG CGTGTTGTTA CTTG TAGTAACACG TTTTTGTAGTTTGTT TERM 98 232175 - 232187 + F 76 -3.4 -5.20783 | ACGCGGTGCGGCAAT TAGC ATGGA GCTA TTTTTGTATTTGCAT TERM 99 232485 - 232500 + G 82 -6.8 -4.77036 | TTGCTGTGTTACACT GGGGAT TACG GTCCCC TTTTTACTCATGAGA APH_0234 232179 - 233591 + | hypothetical protein TERM 100 233598 - 233579 - T 73 -7.1 -3.97602 | opp_overlap 233579 GAATACAGTGACAAA GGCTGCG GCGTAA CGCAACC GTCTTGTAGTATTGT clpB 236245 - 233666 - | ATP-dependent chaperone protein ClpB TERM 101 233880 - 233892 + g 76 -2.7 -5.31456 | GAAATTGTAATGCCT TTGTC GCT GATAA TTTTTTGTAGATTCG APH_0236 236489 - 237235 + | short chain dehydrogenase/reductase family oxidoreductase APH_0237 237904 - 237713 - | hypothetical protein APH_0238 237937 - 238029 + | hypothetical protein TERM 102 238182 - 238165 - g 72 -9.9 -2.752 | overlap 238164 ACTGGTACACATAAG CTCTGTG ATAG CACAGAG ACATACGGATTTGAG APH_0239 238084 - 238251 + | hypothetical protein TERM 103 238334 - 238307 - T 82 -8.4 -4.2803 | opp_overlap 238307 CACCGCAACCTAAAA GGCGTCGCAACC GACA AATCGCGACACC TTTCAAGTTTAATCA TERM 104 238372 - 238358 - T 70 -8.6 -3.31329 | overlap 238356 TTAATCAATAAGATA TGCTTG CAT CAAGCA GTATACGAAACGATT groEL 240048 - 238396 - | chaperonin GroEL groES 240385 - 240101 - | co-chaperonin GroES TERM 105 240275 - 240287 + g 71 -4.8 -4.67552 | TACAGAAACAACTTT GCCT TTTGT AGGC TTCTTTTTTGCTGAG radC 240633 - 241331 + | DNA repair protein RadC lipB 241409 - 242035 + | lipoyltransferase APH_0244 242439 - 242305 - | hypothetical protein pyrC 243856 - 242513 - | dihydroorotase, multifunctional complex type TERM 106 242577 - 242594 + g 71 -4.1 -4.82855 | TTGCCCTTCACTTTT CTTCCTT GGAA AGGGGAG TTTTTCGATTTACTG TERM 107 242931 - 242954 + g 93 -11.8 -3.68023 | opp_overlap 242931, overlap 242928 ATCATACTCAGACGA TCCTCTTCTG TTCG CAGAGGAGGA TTCATTTTCGCCATT TERM 108 243713 - 243696 - G 82 -3.3 -5.42259 | opp_overlap 243697, overlap 243697 TTAGGGTCAAAAAAA CCTGGTC CAAA GTCCAGA ATTTCTTTGCCTCTA APH_0246 244603 - 243884 - | DNA / pantothenate metabolism flavoprotein family protein fumC 244680 - 246068 + | fumarate hydratase TERM 109 246121 - 246156 + F 93 -7 -5.48825 | gap 1, overlap 246113 246122 GTACTTTCCTGCTTG C-GGGTGTTTATAGATG ACA TGTCTATAGGCACCCTG TTTTTTTAAATGCTG TERM 110 246122 - 246154 + F 91 -10.7 -4.37763 | overlap 246113 246121 TACTTTCCTGCTTGC GGGTGTTTATAGATG ACA TGTCTATAGGCACCC TGTTTTTTTAAATGC APH_0248 246419 - 246793 + | hypothetical protein carB 250090 - 246830 - | carbamoyl phosphate synthase large subunit TERM 111 249371 - 249383 + g 74 -6.3 -4.52589 | overlap 249365 CCCGGTATGTACACC CATAG GGT CTATG TTTTCTATGGAGCAC APH_0250 250430 - 250708 + | valyl-tRNA synthetase, truncation APH_0253 251604 - 251503 - | hypothetical protein folP 252474 - 251662 - | dihydropteroate synthase APH_0255 252652 - 252479 - | hypothetical protein TERM 112 253864 - 253877 + G 70 -3.8 -4.80453 | CGGAGGCATGAAGCC CACC ATTAAG GGTG TTTCTTTTGTAGTAG APH_0256 252833 - 255820 + | type I secretion system ATPase TERM 113 255983 - 255972 - g 85 -5.8 -5.08824 | TGGTTATTGAAAAAA CAGG TGGC CCTG AAGTGATGCAGTTTG qor 255944 - 256924 + | quinone oxidoreductase APH_0258 259335 - 256969 - | ATP-dependent DNA helicase UvrD TERM 114 257226 - 257242 + g 74 -4.3 -4.91511 | AATTTGTATCGCTAG CGCACCA TAA TGGCGTG TTTTTATCATCAAAT TERM 115 257919 - 257935 + g 76 -2.9 -5.33848 | overlap 257921 257932 GTATTAGTATGTCAC TTGCTTC TAC GGGGCGA TTTTTTGCTTGTAAT TERM 116 260427 - 260415 - g 78 -9.1 -3.8211 | opp_overlap 260415 TGTCACGGACAAGAA TGGGG AGA CCCCA TTACATATTGCAGTT APH_0259 259843 - 260562 + | ankyrin repeat-containing protein APH_0260 260665 - 261519 + | SPFH domain-containing protein/band 7 family protein APH_0261 261939 - 262271 + | hypothetical protein APH_0262 262595 - 263590 + | AFG1 family ATPase hemH 264599 - 263637 - | ferrochelatase APH_0264 264971 - 264861 - | hypothetical protein TERM 117 264941 - 264962 + g 72 -7.3 -4.06993 | opp_overlap 264940 264941 TCGTACAAAATAACG GGGGAGA ACTATATA TCTCCCC TTCTTTCATATCTAA APH_0265 266140 - 264980 - | hypothetical protein APH_0266 266930 - 266562 - | hypothetical protein TERM 118 266644 - 266626 - G 73 -8.8 -3.52073 | opp_overlap 266625 TTGGTAATACTATAA CGCAGAAG TTC CTTCAGCG AGTTTCTAACCTCCG APH_0267 267222 - 266932 - | hypothetical protein TERM 119 268013 - 267974 - g 79 -10.9 -3.21747 | opp_overlap 267972 TCAGGGCACTACGAA TCTTGCTGTAAGCTCTA GGAAAG TAGAGCTTACAGCTATA AAATATTCTCAAAAG APH_0269 267876 - 268190 + | hypothetical protein APH_0270 268650 - 268519 - | hypothetical protein ihfB 269011 - 268718 - | integration host factor, beta subunit sppA 269921 - 269025 - | signal peptide peptidase SppA, 36K type rpsA 271557 - 269929 - | 30S ribosomal protein S1 cmkB 272346 - 271660 - | cytidylate monophosphate kinase APH_0275 273332 - 272556 - | RNA methyltransferase TERM 120 273408 - 273428 + H 82 -3.9 -5.50925 | overlap 273411 TAAATTTTTTTAAGG CAACTCGGG AAA CTTGAGTGG TTTTTTGTATTGCTT tuf-1 273712 - 274893 + | elongation factor Tu rpsJ 274900 - 275217 + | 30S ribosomal protein S10 rplC 275243 - 275905 + | 50S ribosomal protein L3 rplD 275927 - 276553 + | 50S ribosomal protein L4 rplW 276546 - 276836 + | 50S ribosomal protein L23 rplB 276833 - 277663 + | 50S ribosomal protein L2 rpsS 277669 - 277953 + | 30S ribosomal protein S19 rplV 277956 - 278294 + | 50S ribosomal protein L22 rpsC 278298 - 278933 + | 30S ribosomal protein S3 rplP 278946 - 279359 + | 50S ribosomal protein L16 rpmC 279369 - 279575 + | 50S ribosomal protein L29 rpsQ 279568 - 279798 + | 30S ribosomal protein S17 rplN 279807 - 280166 + | 50S ribosomal protein L14 rplX 280166 - 280480 + | 50S ribosomal protein L24 rplE 280487 - 281020 + | 50S ribosomal protein L5 rpsN 281032 - 281337 + | 30S ribosomal protein S14 rpsH 281355 - 281756 + | 30S ribosomal protein S8 rplF 281769 - 282311 + | 50S ribosomal protein L6 rplR 282328 - 282693 + | 50S ribosomal protein L18 rpsE 282702 - 283223 + | 30S ribosomal protein S5 rplO 283242 - 283679 + | 50S ribosomal protein L15 secY 283700 - 285004 + | preprotein translocase subunit SecY TERM 121 285089 - 285101 + G 76 -7.7 -4.16016 | opp_overlap 285089 AGGGGCTTGAAGTTA TCTCC ATG GGAGA TTTGTTGAGGGCTGA adk 284986 - 285636 + | adenylate kinase rpsM 285699 - 286070 + | 30S ribosomal protein S13 rpsK 286080 - 286454 + | 30S ribosomal protein S11 rpoA 286531 - 287565 + | DNA-directed RNA polymerase subunit alpha rplQ 287599 - 287997 + | 50S ribosomal protein L17 TERM 122 289814 - 289826 + G 84 -2.7 -5.58454 | ATCCGCATGCTTCGA TCAGA AAA TTTGA TTTTTTTGATGTAAA pheT 288010 - 290388 + | phenylalanyl-tRNA synthetase, beta subunit APH_0306 291284 - 293401 + | ComEC/Rec2-related protein APH_0307 295265 - 293934 - | sodium:alanine symporter family protein rnpA 295659 - 295297 - | ribonuclease P protein component rpmH 295784 - 295650 - | 50S ribosomal protein L34 ubiA 296533 - 297411 + | prenyltransferase APH_0311 297432 - 297926 + | flavin reductase family protein TERM 123 298156 - 298176 + F 70 -5.5 -4.46675 | GATCTCGATTAGCTT TTTACGTTG TAT CAGTGTAAA TTTGTTGTATTAAAT APH_0312 298571 - 298741 + | hypothetical protein pstB 298747 - 299505 + | phosphate ABC transporter, ATP-binding protein tgt 300766 - 299582 - | queuine tRNA-ribosyltransferase TERM 124 301353 - 301365 + G 70 -7.7 -3.68506 | opp_overlap 301352 GAGAGTATAAATTAT CACAC CAT GTGTG TTTGGGTGGATATTA rpmF 301238 - 301414 + | 50S ribosomal protein L32 plsX 301421 - 302458 + | putative glycerol-3-phosphate acyltransferase PlsX fabH 302458 - 303417 + | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 125 303570 - 303587 + F 73 -9.9 -3.1855 | TTGAATCTCGCAAGT TTGGCTG GATG CAGCCAA TTCGCTATTGCAAAG APH_0320 304492 - 304593 + | hypothetical protein APH_0321 305399 - 304956 - | cytidine and deoxycytidylate deaminase family protein APH_0322 305577 - 306008 + | hypothetical protein TERM 126 306520 - 306532 + G 88 -3.3 -5.7946 | opp_overlap 306520 CAGCAGATAGAAAAT GCTGC GCA GAAGC TTTTTTTATTGGGGA dnaB 306058 - 307515 + | replicative DNA helicase APH_0324 308936 - 308778 - | hypothetical protein APH_0325 309262 - 310320 + | oxidoreductase, FAD-binding APH_0327 311345 - 310998 - | hypothetical protein APH_0328 312671 - 311724 - | hypothetical protein ispA 313517 - 312675 - | geranyltranstransferase nrdA 314089 - 315900 + | ribonucleotide-diphosphate reductase subunit alpha APH_0332 315968 - 316468 + | hypothetical protein APH_0333 316735 - 316869 + | hypothetical protein APH_0334 317038 - 316895 - | hypothetical protein APH_0335 317643 - 317759 + | hypothetical protein purA 319838 - 318534 - | adenylosuccinate synthetase TERM 127 318583 - 318619 + g 73 -8.8 -3.56366 | gap 1 AAGAAAACTATGTGA TCTCTGTCGGGACTGGT AGAT ACCAGGC-TGACAGGGA TTTGCACAAGTTCTT TERM 128 319913 - 319925 + H 74 -6.3 -4.38154 | opp_overlap 319913 GATCGGAGAGAAGCA TACCT CTT AGGTA TTTTGTCGAGAGTAT APH_0337 321322 - 321897 + | primosomal protein N truncation APH_0338 322597 - 321980 - | OmpA family protein TERM 129 322591 - 322580 - G 89 -3.6 -5.74122 | CAGTAGACAAAAAAA CGAC GAGC GCCG CAACATAGTAGCACC APH_0339 322933 - 324408 + | putative thermostable metallocarboxypeptidase tkt 324440 - 326419 + | transketolase APH_0341 326444 - 326701 + | putative monovalent cation/H+ antiporter subunit F APH_0342 326708 - 327019 + | putative monovalent cation/H+ antiporter subunit G APH_0344 328095 - 328400 + | putative monovalent cation/H+ antiporter subunit C TERM 130 329053 - 329068 + G 71 -4.7 -4.69622 | CGAAGGAGGAGAGGG GTAGC AAGTGC GCTAC TTTTTCGACTTATAT TERM 131 329387 - 329375 - g 78 -9.1 -3.89524 | opp_overlap 329374 329373, overlap 329376 AGCTGATGTGATAAA GCGCA CTT TGCGC GATTTCTGTGATGAG APH_0345 328494 - 330404 + | ribonuclease dnaK 330666 - 332603 + | chaperone protein DnaK APH_0347 332826 - 333284 + | hypothetical protein TERM 132 334242 - 334269 + G 78 -9.2 -3.69534 | overlap 334241 334245 GAGCTCTTATGTTCT CTGCTATATTGC ATTA GCAGTATTGCAG TATTGTTATTTTCAA TERM 133 334388 - 334399 + G 74 -4.4 -5.01553 | opp_overlap 334388 TGCATTTTTACATTA TGCA TGTT TGCA TTTTATTTCTGGCTT APH_0348 334071 - 335591 + | putative monovalent cation/H+ antiporter subunit D TERM 134 336675 - 336664 - g 75 -5.8 -4.614 | GGTAACGATATAAAA CGCA AAGT TGCG GGGATAGCTGATGAC ffh 335584 - 336933 + | signal recognition particle protein era 337008 - 337925 + | GTP-binding protein Era TERM 135 338803 - 338816 + G 71 -3.1 -5.06414 | overlap 338804 CGGCTTGGGAGAAGG TTTCC CAAG GGAAG TTTTTATTGACGCCG APH_0351 337998 - 338834 + | hypothetical protein APH_0352 341471 - 341968 + | hypothetical protein APH_0353 342279 - 343988 + | M24 family metallopeptidase TERM 136 344297 - 344314 + F 74 -4.1 -5.16841 | ATGGTACATAACGAA CAGTTCT TCCC GGAGCTG TTTTTCTTACTATCG APH_0354 344436 - 345128 + | hypothetical protein APH_0355 345234 - 346217 + | hypothetical protein priA 346747 - 348723 + | primosomal protein N' APH_0357 348826 - 348981 + | hypothetical protein APH_0358 349113 - 349223 + | hypothetical protein rpmB 349923 - 350234 + | 50S ribosomal protein L28 TERM 137 350268 - 350305 + T 71 -4.9 -4.61566 | overlap 350269 350270 TTATCTGTATCACAA GTCTATTTGCTGTGC GGGTTGTA GCGCAGCAAGTAGGG TTTTGTAGTTTCCAC TERM 138 350269 - 350304 + T 70 -8.4 -3.36216 | overlap 350268 350270 TATCTGTATCACAAG TCTATTTGCTGTGC GGGTTGTA GCGCAGCAAGTAGG GTTTTGTAGTTTCCA TERM 139 350270 - 350303 + T 70 -9.7 -2.61007 | overlap 350269 350268 ATCTGTATCACAAGT CTATTTGCTGTGC GGGTTGTA GCGCAGCAAGTAG GGTTTTGTAGTTTCC APH_0360 350399 - 350262 - | hypothetical protein APH_0361 350609 - 350758 + | hypothetical protein APH_0362 352023 - 351049 - | ribosomal large subunit pseudouridine synthase A APH_0363 352017 - 352235 + | hypothetical protein pccA 352446 - 354425 + | propionyl-CoA carboxylase, alpha subunit APH_0365 354583 - 358764 + | hypothetical protein APH_0366 359070 - 360560 + | hypothetical protein TERM 140 360804 - 360787 - f 83 -7.1 -4.71426 | opp_overlap 360786 360782 GTGTTAGTAAGAAAA TTTTCCA ACTA TGGAAAA CGTTCATTATAGACT lipA 360960 - 361847 + | lipoyl synthase APH_0369 362127 - 362219 + | hypothetical protein pstA 363955 - 362609 - | phosphate ABC transporter, permease protein PtsA TERM 141 362845 - 362832 - G 74 -8.1 -4.02108 | CCTATCATAATTAAA GGGGA AGAT TCCCC AATAATCCGTGCAAC sodB 364302 - 364922 + | Fe superoxide dismutase virB3 365015 - 365308 + | type IV secretion system protein VirB3 TERM 142 365607 - 365620 + G 70 -5.3 -4.49344 | CGTTTTCTGAGGGTT TTGCT GGTA AGCAA TTTTCTAGTGCGTTT virB4-1 365309 - 367714 + | type IV secretion system protein VirB4 TERM 143 368950 - 368930 - g 74 -6.1 -4.57569 | opp_overlap 368930 TGATTCTCTGAAAAA TCTGCTAGA TCC TCCTGCAGA TTGTACGGGGCGCGC virB6 367707 - 370247 + | type IV secretion system protein VirB6 APH_0375 370385 - 373171 + | VirB6 family type IV secretion system protein TERM 144 375295 - 375283 - g 79 -7.7 -4.28188 | GAGTTATAAGATAAA CTCTG GTG CAGAG AAGCGACAAGGTTAT APH_0376 373184 - 377617 + | type IV secretion systemprotein VirB6 family TERM 145 378187 - 378197 + G 70 -5.4 -4.56978 | TGGCTAGAAAAAGGG TACG GGG CGTA TTTGTTGTTTAAAAG TERM 146 379101 - 379119 + G 70 -5.2 -4.52589 | TTTATTTGATGGTTG GCTGACGC AGT GTATCAGC TTTTCTATGCAGGCC TERM 147 380716 - 380744 + G 71 -8.8 -3.32844 | opp_overlap 380713 380720, overlap 380719 380720 GACAGAATAAGAGAT GAGATCGTGCGG TTATC CCGCGCGAATTC TTCTGAGATACCGGA TERM 148 380720 - 380740 + G 75 -10.4 -2.88118 | opp_overlap 380713 380720, overlap 380719 380716 GAATAAGAGATGAGA TCGTGCGG TTATC CCGCGCGA ATTCTTCTGAGATAC TERM 149 383161 - 383149 - g 72 -7.7 -3.75169 | GAGTATGGTACTAAA CCTGA TGA TCAGG AGAAGGATGGTAATA TERM 150 383245 - 383233 - g 72 -7.7 -3.75169 | GAGTATGGTACTAAA CCTGA TGA TCAGG AGAAGGATGGTAATA TERM 151 383329 - 383317 - g 72 -7.7 -3.75169 | GAGTATGGTACTAAA CCTGA TGA TCAGG ATGGTGATAAGGGTG TERM 152 383575 - 383563 - g 72 -7.7 -3.75169 | GAGTATGGTACTAAA CCTGA TGA TCAGG ATGGTGATAAGGGTG TERM 153 383821 - 383809 - g 72 -7.7 -3.75169 | GAGTATGGTACTAAA CCTGA TGA TCAGG ATGGTGATAAGGGTG TERM 154 384520 - 384499 - g 72 -7.3 -4.04071 | AAAGACCAAGAACAA GATGCTTCT AAGG AGACGCATC AGGATGAGAAAAAGA APH_0377 377638 - 384720 + | type IV secretion system VirB6 family protein APH_0378 385406 - 384798 - | hypothetical protein TERM 155 385452 - 385464 + r 70 -3.4 -4.97405 | AGTGTTCTTCATTCT GTGA CGTAA TCAC TTTATTTTTGTCACT dut 386887 - 386447 - | deoxyuridine 5'-triphosphate nucleotidohydrolase ispH 388381 - 387407 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase carA 390046 - 388949 - | carbamoyl phosphate synthase small subunit TERM 156 389246 - 389258 + g 78 -9.1 -3.86283 | CATCTTAATAGTTTT GGCTC CAA GAGCC TTTGCTATAAGTTGA TERM 157 390015 - 389997 - G 73 -3.8 -5.0133 | GATCTTCCGAAAAAA TACCGCCC ATC AGACAGTA CAATAACCGCATTAT TERM 158 390200 - 390168 - H 73 -8.5 -3.65425 | GCTATAGATGCGAAA TTCCACAACAACATA CAC CAGGTTGTTGTGGGA ACTTACACTCATAGG TERM 159 390647 - 390637 - H 74 -4 -5.14563 | TTCTTTATTAAAAAA TCAA TCA TTGA GTTGCACAGTGCTGC TERM 160 391537 - 391564 + G 77 -10.7 -2.77999 | gap 1, opp_overlap 391514 391523 391545, overlap 391533 391545 TGCGCCTCTCATTAG CGACAGAAGCGC GTATA GCGCTT-TGTCG TAATCTTGATCAGTA APH_0382 390708 - 392141 + | HGE-14 protein TERM 161 392577 - 392560 - T 70 -2.7 -5.13722 | gap 1, opp_overlap 392561, overlap 392561 TGCATCAAAACAAAA CGCCTCAT TCT ATG-GGCA TTACTATTTATTAAA TERM 162 392608 - 392596 - T 79 -4.9 -5.1675 | CTATTTATTAAAAAA TCAAT AAT ATTGA GCTGCATCACAGCGG TERM 163 393491 - 393520 + T 86 -7.2 -5.03747 | gap 1, opp_overlap 393489 TAGTGCAAAGAACCG CCTAGCTCTCGCT AAAAA AGCGAGAAC-AGG TTTTTTACACCATTT APH_0384 395159 - 394839 - | hypothetical protein TERM 164 395103 - 395119 + g 73 -5.2 -4.74453 | AAGTTCTTTTTTTAG CACAAA AACAA TTTGTG TTTTTAGCTCTGTTA TERM 165 395492 - 395505 + H 71 -6.7 -4.12902 | opp_overlap 395503, overlap 395503 TCTCAGGCTAGAGCT GCGTT TAGA AACGC TTTTAAGCGTAATTG TERM 166 395766 - 395779 + G 74 -6.7 -4.30987 | overlap 395762 AGCTATGTCTGGATA TGCCT ACAA AGGCA TTTCTTCTGCGGAAT TERM 167 396537 - 396566 + G 89 -7.2 -5.03747 | gap 1, opp_overlap 396535 TAGTGCAAAGAACCG CCTAGCTCTCGCT AAAAA AGCGAGAAC-AGG TTTTTTACACCATTT APH_0385 395722 - 397224 + | HGE-14 protein TERM 168 397336 - 397324 - g 80 -4.9 -5.1675 | CTATTTATTAAAAAA TCAAT AAT ATTGA GCTGCATAACGCTGG APH_0386 397273 - 398853 + | HGE-14 protein APH_0387 399003 - 401087 + | HGE-14 protein APH_0388 401346 - 401441 + | hypothetical protein gpmI 401407 - 402897 + | phosphoglyceromutase engA 404325 - 403003 - | GTP-binding protein EngA APH_0391 404492 - 404623 + | hypothetical protein TERM 169 404784 - 404800 + G 81 -5.1 -5.17054 | TTTTTCGGGTAGTTG CACGATT ATG AACCGTG TTTTTTACGTGTTGT APH_0392 404781 - 406004 + | PQQ repeat-containing protein lpdA-2 406012 - 407418 + | dihydrolipoamide dehydrogenase APH_0394 407478 - 408506 + | RND family efflux transporter MFP subunit infA 408584 - 408829 + | translation initiation factor IF-1 maf 408852 - 409433 + | maf protein rpsB 409572 - 410462 + | 30S ribosomal protein S2 tsf 410498 - 411361 + | elongation factor Ts APH_0399 411630 - 412424 + | ABC 3 transport family protein APH_0400 412643 - 413407 + | hypothetical protein petA 413710 - 414279 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit petB 414288 - 415514 + | ubiquinol-cytochrome c reductase, cytochrome b petC 415516 - 416268 + | ubiquinol-cytochrome c reductase, cytochrome c1 TERM 170 417109 - 417098 - g 75 -3 -5.1287 | opp_overlap 417098, overlap 417103 417107 TGCACAGGGAAAAAA GAAT ATAT ATTC TGTTGCAGAAGATAA TERM 171 418541 - 418551 + G 74 -4.6 -4.74801 | overlap 418543 TAGGGGGGAGAGTAT GCGC TGC GTGC TTTTTACTCAGCTTC TERM 172 418588 - 418614 + G 75 -10.2 -2.89659 | opp_overlap 418613, overlap 418587 TAGCGGCGAGCTACA GCTTTGCTACGG GGT TCGTAGAAAAGC GTTATTGTCGCTATA APH_0404 417021 - 418745 + | hypothetical protein APH_0405 418811 - 420421 + | hypothetical protein TERM 173 420479 - 420505 + F 100 -10.9 -5.60993 | gap 1 CCAAGTCTTCTTATT GGGGCG-TGTAC TGAG GTACGGCGCCCC TTTTTTTGTGGAGAG TERM 174 423119 - 423130 + G 75 -5.8 -4.62471 | overlap 423117 AAAGATCATTAGTCG CACG TATG CGTG TTTTTAAAGATTACA TERM 175 423343 - 423329 - g 70 -2.7 -4.99134 | ATGCTAAAGGAAAAA CGCGC TTATT GCGGG ATAGTACTGATATAG APH_0406 422137 - 423816 + | hypothetical protein APH_0407 424160 - 424357 + | hypothetical protein gltX-2 426800 - 425394 - | glutamyl-tRNA synthetase APH_0409 426766 - 426903 + | hypothetical protein mutM 427134 - 427940 + | formamidopyrimidine-DNA glycosylase TERM 176 428571 - 428581 + F 81 -6.8 -4.66609 | opp_overlap 428571 ATTAGGTACAAGCGA GCCT TAT AGGC TTTTTACATCACGTG APH_0413 429245 - 429418 + | hypothetical protein APH_0414 429617 - 429456 - | hypothetical protein TERM 177 430176 - 430195 + G 70 -3.5 -4.87665 | overlap 430177 TAGGGGTAGGCTTAC TGCCCGA GAAAGG TTGGGCG TTTTTCTCGATAAGG TERM 178 431081 - 431100 + G 72 -7.1 -3.98009 | GTCTGGACATAGATT CCTCGCG AAAGGC TGCGAGG TTTGTGAGATTTTGT pccB 430072 - 431601 + | propionyl-CoA carboxylase, beta subunit APH_0416 431627 - 431722 + | hypothetical protein APH_0417 431842 - 431711 - | type IV secretion system protein VirB4, N-terminal truncation APH_0418 432117 - 431977 - | type IV secretion system protein VirB6,C-terminal truncation APH_0419 432943 - 432110 - | type IV secretion system protein VirB4, truncation TERM 179 433271 - 433254 - R 75 -2.7 -5.20781 | overlap 433256 TAGTAGAAAACAAAA GACACAA GAGT TTGTGTA GCGCACTGTCAGGGA prfA 434593 - 433514 - | peptide chain release factor 1 APH_0421 434919 - 435500 + | GTPase EngB argB 435478 - 436461 + | acetylglutamate kinase hemF 436644 - 437468 + | coproporphyrinogen III oxidase TERM 180 437900 - 437917 + G 70 -7.7 -3.6269 | opp_overlap 437899 437900 TAGGTTTGCTGAAAC TCGTGGG TATT CCCATGA TATTTCTGTCCGTAA APH_0424 437776 - 438966 + | sodium:dicarboxylate symporter family protein APH_0425 439222 - 439332 + | hypothetical protein APH_0426 439426 - 441414 + | hypothetical protein serS 443068 - 441782 - | seryl-tRNA synthetase TERM 181 443539 - 443528 - g 75 -3 -5.14563 | TCTTTGATGAAAAAA TGAA TAAA TTCA GCAAAATGTCACGCG APH_0428 443254 - 444489 + | putative DNA recombination protein RmuC APH_0429 444659 - 444817 + | hypothetical protein APH_0430 445011 - 445634 + | hypothetical protein miaA 446858 - 445920 - | tRNA delta(2)-isopentenylpyrophosphate transferase APH_0432 447263 - 447730 + | hypothetical protein APH_0433 447896 - 448882 + | hypothetical protein nuoF 448952 - 450232 + | NADH dehydrogenase I subunit F nuoJ 451464 - 452069 + | NADH dehydrogenase I, J subunit nuoK 452113 - 452439 + | NADH dehydrogenase I, K subunit nuoL 452559 - 454436 + | NADH dehydrogenase I, L subunit TERM 182 454653 - 454675 + G 73 -5.6 -4.48869 | overlap 454654 TAGATAGGTTATCAT TGTTGATGGT GAT ACTATCGACG TTTCTCTTCTTTTTA TERM 183 455439 - 455449 + G 88 -6.8 -5.10968 | GTCATGGTCTTATTT CAGC TGC GCTG TTTTTATGTGTTGGT nuoM 454433 - 455908 + | NADH dehydrogenase I, M subunit TERM 184 456598 - 456617 + G 73 -2.8 -5.2422 | gap 1 ATACGTATGAAGGTG CGCCAACTG TTG CGGT-GGTG TTTTTTACTATAGTT TERM 185 457018 - 457034 + G 71 -4.4 -4.78205 | gap 1, overlap 456999 CAGCGTTGTTGGCGT CGGCTGG GTTG CCA-CCG TTTTCTGGTTTTTTT TERM 186 457206 - 457227 + G 70 -8.1 -3.63059 | gap 1, opp_overlap 457208, overlap 457202 GTGCCGACGGGGGAA CATTCC-GCT ACA AGCAGGAATG TTGGTTTGTCGATTA nuoN 455910 - 457304 + | NADH dehydrogenase I, N subunit dxr 457401 - 458558 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase APH_0441 458719 - 460512 + | hypothetical protein TERM 187 460498 - 460518 + F 70 -8.3 -3.43081 | overlap 460496 GATCTTGGTGATTTT GTGAGCCTA AGG TAGGTTCGC TATTTCACGTTGTGT TERM 188 461318 - 461331 + G 70 -8.1 -3.64703 | GTGAGAGATTTAGTG GCGGT ATAC ACCGC TTTAGCTAGGCAAAG ispG 460691 - 461893 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 189 462452 - 462469 + G 76 -2.7 -5.27923 | overlap 462453 GTGTATTATTATATA TTTCCGT TAGC ATGGAAG TTTTTTATAAAATTC tatC 462077 - 462802 + | Sec-independent protein translocase TatC TERM 190 466078 - 466096 + G 78 -6 -4.78107 | ATGGGATTATTATTT GCAACG GCTGTTA CGTTGC TTTTTACTCCTGCTG APH_0444 463060 - 466158 + | AcrB/AcrD/AcrF family transporter TERM 191 466608 - 466624 + G 74 -6.6 -4.30576 | overlap 466622 CGGCAGGTTCTGGTA GTGAAG GATGA CTTCAC TTTTGATAGTGAAGA nusA 466398 - 467942 + | transcription elongation factor NusA infB 467960 - 470431 + | translation initiation factor IF-2 rbfA 470428 - 470784 + | ribosome-binding factor A APH_0448 471008 - 470781 - | translation elongation factor G, truncation APH_0449 471870 - 471160 - | TerC family integral membrane protein clpA 472014 - 474335 + | ATP-dependent Clp protease, ATP-binding subunit ClpA typA 474418 - 476256 + | GTP-binding protein TypA APH_0452 477026 - 478408 + | HGE-14 protein TERM 192 479567 - 479557 - f 74 -4 -5.1675 | CTATTTATTAAAAAA TCAA TAA TTGA ACTGTACAGCGCTGA APH_0453 479627 - 481105 + | HGE-14 protein TERM 193 481541 - 481524 - f 70 -2.7 -5.13722 | gap 1, opp_overlap 481525, overlap 481525 TGCATCAAAACAAAA CGCCTCAT TCT ATG-GGCA TTACTATTTATTAAA TERM 194 481572 - 481560 - f 79 -4.9 -5.1675 | CTATTTATTAAAAAA TCAAT AAT ATTGA GCTGCATCACAGCGG TERM 195 482455 - 482484 + F 86 -7.2 -5.03747 | gap 1, opp_overlap 482453 TAGTGCAAAGAACCG CCTAGCTCTCGCT AAAAA AGCGAGAAC-AGG TTTTTTACACCATTT APH_0455 483333 - 485846 + | HGE-14 protein APH_0456 485916 - 486080 + | hypothetical protein TERM 196 486295 - 486315 + T 70 -2.5 -5.09225 | opp_overlap 486298, overlap 486298 GCTCAAAGCGGGCAC GAAGTAACA CAC TGTTTCCTC TTTTTTCAATACAAT TERM 197 486321 - 486333 + T 75 -2.7 -5.24129 | overlap 486322 CTGTTTCCTCTTTTT TCAAT ACA ATTGG TTTTTTATGCCACGG APH_0457 488020 - 486569 - | HGE-14 protein APH_0458 488214 - 488384 + | hypothetical protein TERM 198 489665 - 489675 + F 70 -2.6 -5.17576 | CTCCTCACGCTGTAT TTAA ATT TTAA TTTTTTAGATTAATA APH_0459 490020 - 490136 + | hypothetical protein APH_0460 490148 - 490249 + | hypothetical protein APH_0461 491153 - 491043 - | hypothetical protein APH_0463 492822 - 492604 - | peptide chain release factor 2, truncation TERM 199 493312 - 493293 - g 83 -12.2 -2.81223 | overlap 493290 493288 GGTAAGAAGATACGA GGCATGGT TGTG ACCATGCC GGGAAAGGGCATAGA APH_0464 493248 - 493379 + | hypothetical protein ssb 494025 - 493546 - | single-strand binding protein APH_0466 494407 - 494189 - | hypothetical protein APH_0467 494789 - 494902 + | hypothetical protein APH_0468 495029 - 495709 + | peptide chain release factor 2, truncation APH_0469 496085 - 497470 + | putative malonyl-CoA decarboxylase gatB 497496 - 498947 + | aspartyl/glutamyl-tRNA amidotransferase subunit B APH_0471 499228 - 499785 + | exodeoxyribonuclease III, N-terminal truncation fabI 500764 - 501591 + | enoyl-(acyl-carrier-protein) reductase dnaA 501807 - 503186 + | chromosomal replication initiation protein APH_0475 503209 - 503325 + | hypothetical protein APH_0476 503325 - 503432 + | hypothetical protein APH_0477 504482 - 504372 - | hypothetical protein prfB 507064 - 505933 - | peptide chain release factor 2, programmed frameshift APH_0480 508002 - 507265 - | hypothetical protein TERM 200 509748 - 509758 + G 82 -6.8 -4.89339 | opp_overlap 509747 TTACAGGTATTATAG CAGC GAT GCTG TTTTTCTACATACTT APH_0481 509012 - 509845 + | YihY family protein bioA 509908 - 511179 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase APH_0483 511693 - 511854 + | hypothetical protein APH_0484 512109 - 512324 + | hypothetical protein APH_0485 513934 - 512519 - | hypothetical protein APH_0486 514297 - 514836 + | hypothetical protein TERM 201 515853 - 515839 - g 82 -2.1 -5.63374 | opp_overlap 515851 TTAATAGTAAAAAAA GAAAC ATTAA GCTTC TCTGGAAAGAGGGAA APH_0487 515796 - 516377 + | hypothetical protein APH_0488 516423 - 516548 + | hypothetical protein TERM 202 516573 - 516630 + F 79 -10.7 -3.21914 | gap 1 GGGCTGTCTTCTGAT TCGGGATTGAAGTTTTTCAGC-CACTTC TTC GAAGTGTGCAGATGGCTTTCAATCCCGG TCTCCTTTTGTTTGA TERM 203 517331 - 517344 + F 79 -6.7 -4.61633 | opp_overlap 517331 TTTATTCTTTACAGA TTGCC ATCT GGCAA TTTTTAACAGTCTGT APH_0489 517782 - 517904 + | hypothetical protein APH_0490 518467 - 518357 - | hypothetical protein APH_0491 518991 - 519113 + | hypothetical protein TERM 204 519609 - 519599 - T 84 -2.4 -5.82388 | overlap 519600 AAATTGCAAAAAAAA GCCG CAG CGGA TTACGGACTCTATAG APH_0492 520652 - 519996 - | putative translaldolase atpC 521035 - 520649 - | ATP synthase F1, epsilon subunit atpD 522566 - 521127 - | F0F1 ATP synthase subunit beta TERM 205 521897 - 521915 + g 81 -7.4 -4.60487 | opp_overlap 521900, overlap 521898 CATTCATTTGCCCAT ACACAAGC ACC GCTTGTGA TTTTTCGCGCTCATC TERM 206 521898 - 521914 + g 81 -10.9 -3.3581 | opp_overlap 521900, overlap 521897 ATTCATTTGCCCATA CACAAGC ACC GCTTGTG ATTTTTCGCGCTCAT TERM 207 524392 - 524404 + G 100 -7.7 -5.51353 | opp_overlap 524381 524379 524378, overlap 524381 524378 AGTATGCGCTGCAAG CGACA TAA TGTCG TTTTTATTCTTTTTA mgtE 523100 - 524446 + | magnesium transporter TERM 208 525194 - 525211 + F 73 -2 -5.25735 | gap 1 CTGTGACGATGTTAA GTGCACT ATTTG AG-GCAC TTTTTCCTTTTTTGA TERM 209 525624 - 525635 + F 72 -4.4 -4.70887 | TCATTGCCAAAGTAC GTGA CTAT TCAC TTTATTTCTTACTGG APH_0497 526016 - 526129 + | hypothetical protein TERM 210 526754 - 526766 + T 79 -3.3 -5.47159 | overlap 526755 TGTGTATGTGTGATA TCCCT TTT AGGGC TTTTTTATATTGAGA APH_0499 527039 - 526935 - | hypothetical protein truA 529357 - 528617 - | tRNA pseudouridine synthase A pyrB 530256 - 529354 - | aspartate carbamoyltransferase catalytic subunit rrmJ 531148 - 530405 - | ribosomal RNA large subunit methyltransferase J xth 532614 - 531793 - | exodeoxyribonuclease III APH_0506 533613 - 532954 - | hypothetical protein APH_0507 533785 - 533913 + | hypothetical protein rpmJ 533942 - 534109 + | ribosomal protein L36 APH_0509 534331 - 534426 + | hypothetical protein APH_0510 535010 - 535180 + | putative lipoprotein APH_0511 535345 - 535620 + | NADH dehydrogenase I, C subunit, truncation APH_0512 535852 - 535739 - | hypothetical protein TERM 211 536164 - 536133 - R 72 -8.8 -3.52079 | gap 1, opp_overlap 536140, overlap 536134 536137 536154 CAATAGCCGATATAA GCCACAAGAGCACGT TAG ACATGCGCTTGTG-C GTAAACCCTATAATA TERM 212 536499 - 536514 + r 85 -2.6 -5.76633 | GCTTAGGTTCATAGC TGATAT CCGA ATGTCA TTTTTTTATATGTGA APH_0513 537637 - 536954 - | Smr domain-containing protein rpoZ 538194 - 537787 - | DNA-directed RNA polymerase, omega subunit TERM 213 538492 - 538513 + r 77 -5.1 -4.99035 | overlap 538494 ACTACATACTCCTGA GGCTACACG TAAA TGTGTAGAC TTTTTCTATGACTGG APH_0515 538905 - 538570 - | hypothetical protein APH_0516 539699 - 539878 + | hypothetical protein APH_0517 539958 - 539845 - | hypothetical protein APH_0518 539943 - 540077 + | hypothetical protein nuoA 540417 - 540779 + | NADH dehydrogenase I, A subunit nuoB 540782 - 541306 + | NADH dehydrogenase subunit B nuoC 541308 - 541874 + | NADH dehydrogenase I, C subunit APH_0522 542106 - 541993 - | hypothetical protein TERM 214 542418 - 542387 - H 72 -8.8 -3.52079 | gap 1, opp_overlap 542394, overlap 542388 542391 542408 CAATAGCCGATATAA GCCACAAGAGCACGT TAG ACATGCGCTTGTG-C GTAAACCCTATAATA TERM 215 542753 - 542768 + H 85 -2.6 -5.76633 | GCTTAGGTTCATAGC TGATAT CCGA ATGTCA TTTTTTTATATGTGA APH_0523 543188 - 543316 + | hypothetical protein TERM 216 544376 - 544386 + F 70 -5.4 -4.31697 | overlap 544373 TAACACCCTATAGGC GCAT AAC ATGC TTCTTTATTCTATAT TERM 217 544861 - 544842 - g 70 -9.2 -2.78596 | opp_overlap 544847 TATTCTGGTACTATA GCTGCAGC GGCT GCTGCCGC CTCTATGGGGATCCC surE 544557 - 545264 + | stationary-phase survival protein SurE APH_0525 545280 - 545411 + | hypothetical protein ccmE 545395 - 545820 + | cytochrome c-type biogenesis protein CcmE pyrF 547315 - 546629 - | orotidine 5'-phosphate decarboxylase TERM 218 546736 - 546747 + gT 80 -4.4 -5.23316 | CAAGTGTATCTTTAG GAGT ATCA ACTC TTTTTTGGTCTCCTG APH_0528 548093 - 547281 - | TatD family hydrolase APH_0529 548284 - 548382 + | hypothetical protein APH_0530 548560 - 548799 + | TatD family hydrolase truncation APH_0531 549013 - 548882 - | hypothetical protein APH_0532 549745 - 549611 - | hypothetical protein APH_0533 549880 - 549782 - | hypothetical protein leuS 552422 - 549909 - | leucyl-tRNA synthetase TERM 219 553077 - 553094 + r 73 -5.5 -4.58085 | opp_overlap 553077 AATATACTGCATAGA GTGGCAT AAAC ACGCCAC TTTCTTTATCAGTAT uvrA 558091 - 555227 - | excinuclease ABC, A subunit TERM 220 555688 - 555674 - G 71 -4.2 -4.87273 | overlap 555676 AATAGCTGAGAAAAA GTCCAA TGC TTGGTC AACAGTCATATCCAA TERM 221 557269 - 557258 - G 73 -5.8 -4.41494 | opp_overlap 557256 557258 TATGTTGAACGAAAA GAGC TTTG GCTC TATTGCTCCCACATT TERM 222 557952 - 557930 - G 81 -11.4 -2.88427 | AAGACTCTCGACATA TCTACGCTGA CCT TCAGCGTAAA GCGTATCAAATGCTA nusB 558968 - 558120 - | N utilization substance protein B ribH 559428 - 558970 - | riboflavin synthase subunit beta APH_0540 561147 - 559441 - | putative inner membrane protein translocase component YidC TERM 223 559605 - 559623 + g 100 -8.8 -4.788 | TCATGACCCCATATC GATCCGGC GTA GCCTGATC TTTTTGCATTACTTT TERM 224 561241 - 561225 - H 73 -7.3 -4.09822 | AAGCTAGCATATAAA GCATTGC AAC GCAATAC GGATATGCTCACTAA APH_0541 561872 - 562240 + | hypothetical protein pssA 563924 - 563130 - | CDP-diacylglycerol--serine O-phosphatidyltransferase APH_0544 564721 - 564038 - | phosphatidylserine decarboxylase APH_0545 568733 - 565362 - | heme/FAD-binding domain-containing protein TERM 225 569220 - 569178 - R 100 -17.2 -3.8591 | opp_overlap 569194 GTTTAGAATCAAGAA CGCGCCACACAATTCATGTT AGA AACATTAACTGTGCAGCGCG CGTGTAGATCATCCT APH_0546 572576 - 569265 - | hypothetical protein TERM 226 570472 - 570485 + g 71 -2.3 -5.14563 | overlap 570473 TGAGCGGAAGATCCT ACAGC TGAA GCTGG TTTTTTAATAGCACC TERM 227 572519 - 572530 + g 79 -3 -5.28166 | AACTTATCTTATTTT TCTT CTTA AAGA TTTTTGTTAATTTTC TERM 228 572572 - 572559 - G 73 -3.9 -4.96501 | opp_overlap 572555, overlap 572555 TCCCATAAAAATAAA TACTT TATT AAGTA TCAAAAATTTTATTA efp 573226 - 573792 + | translation elongation factor P TERM 229 574487 - 574473 - g 71 -10 -2.62175 | overlap 574472 GTGGAAGAGAGCAAG GGTGGT GTT ACCACC GATAATGGCCTTTTT APH_0548 573795 - 574565 + | putative inositol monophosphatase rluC 574601 - 575494 + | ribosomal large subunit pseudouridine synthase C APH_0550 575543 - 575656 + | hypothetical protein pleD 577504 - 576134 - | response regulator PleD APH_0552 578103 - 577663 - | putative twin-arginine translocation protein TatB APH_0553 582982 - 578096 - | NAD-glutamate dehydrogenase family protein APH_0554 584245 - 584973 + | putative exopolysaccharide synthesis protein ExoD cysS 584970 - 586358 + | cysteinyl-tRNA synthetase APH_0556 586410 - 586523 + | hypothetical protein APH_0557 587041 - 586847 - | hypothetical protein APH_0558 587579 - 587671 + | hypothetical protein APH_0559 587689 - 587784 + | hypothetical protein TERM 230 588776 - 588798 + GF 74 -4.8 -4.70879 | overlap 588777 TAGATACTATTGGGA TGCCTGAGGT AGA ATATCAGGCG TTTTTGAAGTTTGAG nrdF 588436 - 589407 + | ribonucleotide-diphosphate reductase subunit beta APH_0561 589358 - 589990 + | putative thiol-disulfide oxidoreductase TERM 231 590378 - 590396 + T 74 -6.1 -4.42667 | ATTCTAAAGCTATAG CCAATAA ACTTG TTATTGG TTTTGATGATTTTCC TERM 232 590497 - 590519 + T 70 -3.4 -4.88918 | opp_overlap 590497, overlap 590492 TAAACTCGTCCACAA GCATTACTAT AAC ATCGTAAAGC TTTTGTTTCAGATCA APH_0562 591096 - 590947 - | hypothetical protein APH_0563 591510 - 591620 + | hypothetical protein APH_0565 593172 - 592891 - | hypothetical protein APH_0566 593577 - 594557 + | hypothetical protein TERM 233 594627 - 594645 + T 74 -6.1 -4.42667 | ATTCTAAAGCTATAG CCAATAA ACTTG TTATTGG TTTTGATGATTTTCC APH_0567 595686 - 595561 - | hypothetical protein APH_0568 596404 - 596216 - | hypothetical protein APH_0569 596752 - 596904 + | hypothetical protein APH_0570 596965 - 597129 + | hypothetical protein dnaG 597914 - 599737 + | DNA primase APH_0572 600936 - 600532 - | DNA mismatch repair protein MutS, truncation APH_0573 601216 - 601332 + | hypothetical protein ispE 602416 - 601526 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase APH_0575 602609 - 603556 + | putative tRNA-dihydrouridine synthase TERM 234 604092 - 604103 + G 70 -5.8 -4.4009 | opp_overlap 604092 ATTTGTGTGAGATGA GCTC GGTT GAGC TTTTATCACGTGAAG rpoD 603773 - 605656 + | RNA polymerase sigma factor RpoD APH_0577 606272 - 606138 - | hypothetical protein APH_0578 607140 - 606910 - | hypothetical protein TERM 235 606985 - 607001 + g 76 -2.9 -5.36441 | overlap 606986 CATCTGTATATGTTT ACTGAAG CTA CTTCGGC TTTTTTCTGTGGAGC APH_0580 608001 - 608120 + | hypothetical protein cutA 608558 - 608223 - | periplasmic divalent cation tolerance protein CutA TERM 236 608326 - 608338 + g 80 -2.7 -5.42862 | GGTGTGTTATAAGGG TGAAG TTC CTTTA TTTTTTTCGCAATCT APH_0582 611050 - 608606 - | sensor histidine kinase/response regulator TERM 237 609860 - 609872 + g 74 -7.7 -3.92996 | opp_overlap 609859 609862, overlap 609862 AGTTATGTAGCACAC CACTG ATA CAGTG TTATTATGTATCAGC TERM 238 611502 - 611512 + r 70 -2.6 -5.00884 | opp_overlap 611502 GATGTAGCAGTAAGA TATA TAC TATA TTTTTTCGGAAGGCT APH_0583 611748 - 611650 - | hypothetical protein APH_0584 613041 - 612385 - | O-methyltransferase family protein TERM 239 613065 - 613081 + H 80 -2.3 -5.66684 | overlap 613067 TATACGTTTCTAATT TGTAGGA AGA TCTTATA TTTTTTTATAAATTC APH_0585 613317 - 613610 + | hypothetical protein TERM 240 613691 - 613703 + F 91 -7.7 -5.33331 | TTTTTGTTAATTTTG CCACT AAC AGTGG TTTTTCTTATGTTTG TERM 241 615356 - 615342 - gf 72 -10 -2.60283 | overlap 615341 615339 615335 TATTGAAAGGAATAG CTGGAG GTG CTCCAG TGACTCAACTCTTTT TERM 242 615396 - 615383 - gf 72 -3.1 -5.0538 | overlap 615393 TTTTATGCTAAAAAA GGTAT CATA ACACC CGAGATGGAGTATGT APH_0586 615023 - 615529 + | thiamine biosynthesis protein ThiC, truncation APH_0587 615501 - 615644 + | hypothetical protein APH_0588 615691 - 617070 + | YjeF family protein APH_0589 617659 - 617793 + | hypothetical protein TERM 243 617965 - 617949 - f 76 -10.8 -2.50511 | opp_overlap 617946, overlap 617948 617946 GCTATAATGCAATAG GCGCGG CTGAT CCGCGC AGACTTTTTCATCGT APH_0590 618053 - 618160 + | hypothetical protein APH_0591 618193 - 618414 + | hypothetical protein APH_0592 618447 - 618587 + | hypothetical protein APH_0593 618748 - 618864 + | hypothetical protein APH_0594 619592 - 618960 - | hypothetical protein APH_0595 619838 - 619984 + | hypothetical protein APH_0596 620013 - 620189 + | hypothetical protein TERM 244 620423 - 620436 + F 85 -2.5 -5.71712 | opp_overlap 620430, overlap 620429 TTAAGAAAAAGTTTA TAATT TAGC AATTA TTTTTTTCTATACAG TERM 245 622745 - 622769 + G 100 -8.5 -5.0538 | AAAGAGATCAAGTTG GGTATTGGCCG TTT CGGACCATACC TTTTTTACAATGGCG topA 620600 - 623035 + | DNA topoisomerase I APH_0598 623277 - 623173 - | hypothetical protein TERM 246 624939 - 624927 - R 73 -7.7 -3.83323 | CTGACATAACTTAAA GTAGC AAC GCTAC CAGTGCGTATTAATT TERM 247 625167 - 625153 - R 71 -5 -4.58859 | opp_overlap 625153 AAATACAACAACAAA GACTAT GTG ATAGCC GTTAGTCCCTGCTCT APH_0599 625603 - 625508 - | hypothetical protein thiC 627823 - 626150 - | thiamine biosynthesis protein ThiC TERM 248 626212 - 626189 - G 71 -4.6 -4.67982 | TTTCATGGAACAAAA TTTTGGCCCA CACA TGGAACAAAA ATGCGCTGTTTTTCC TERM 249 627450 - 627463 + g 71 -3.1 -5.0538 | overlap 627443 ACATACTCCATCTCG GGTGT TATG ATACC TTTTTTAGCATAAAA TERM 250 627490 - 627504 + g 71 -10 -2.60283 | overlap 627489 627487 627483 AAAAGAGTTGAGTCA CTGGAG CAC CTCCAG CTATTCCTTTCAATA APH_0601 630439 - 630176 - | hypothetical protein APH_0602 630549 - 630683 + | hypothetical protein TERM 251 630776 - 630792 + T 73 -6.7 -4.21194 | TGCAGAATTCTATTC TTAATGT ATA ACATTAA TTTTAAATCGTAACA APH_0603 631125 - 630967 - | hypothetical protein APH_0604 631591 - 631478 - | hypothetical protein APH_0605 631860 - 631744 - | hypothetical protein TERM 252 632413 - 632435 + r 74 -4.9 -4.82901 | gap 1, overlap 632416 632418 GCTATGGCAAGTATG TGGAAGCTGC GCGC GCAGC-TCTA TTTTTGTACAAGAGA ubiG 633267 - 632557 - | 3-demethylubiquinone-9 3-methyltransferase lysK 634867 - 633323 - | lysyl-tRNA synthetase TERM 253 634518 - 634506 - G 77 -4.8 -5.01732 | AATCTGTCTAAAAAA GCAC AGAAA GTGC CGTTCATATGATGGC APH_0608 637049 - 635244 - | ppiC/parvulin rotamase family protein TERM 254 637106 - 637078 - R 79 -6.7 -4.54477 | overlap 637070 CCAAAAGTGACAAAA GCCATGGCACC TAAAACC GTTGCCATGAC CACCCAAACATAAAT APH_0609 637439 - 637338 - | hypothetical protein TERM 255 637893 - 637876 - R 79 -8.5 -4.02571 | CAAGGGATCAAATAA CAGTGTT TCTT AACACTG CGAACTAAAATTTTA TERM 256 639091 - 639074 - R 74 -6.3 -4.42653 | AGCTTACGCACAAAA GCTAGAC ACAT ATCTAGC CCGATTGATGTTATC APH_0610 639715 - 639128 - | glycoprotease family protein APH_0611 640917 - 639733 - | hypothetical protein TERM 257 639845 - 639831 - G 71 -5 -4.59773 | TTGCAGGGTCAAAAA CTACAT ATA ACGTAG TGATGAGGGACAACA APH_0612 642284 - 641085 - | hypothetical protein TERM 258 642029 - 642015 - G 75 -5.7 -4.70659 | CTGTACACTCAAAAA GTGAG ATATA CTCAC TGACAAGGTATTGGA TERM 259 642960 - 642972 + G 71 -4.8 -4.67697 | TGTGTATTAGTCATA GCAG GGTCA CTGC TTTATTGTTTTGGGC APH_0614 642930 - 643679 + | putative rod shape-determining protein APH_0615 644259 - 643654 - | hypothetical protein TERM 260 646381 - 646395 + H 70 -8.6 -3.31263 | AGAGGCTGAAGGCGG CGGTTT GCT AAACCG TTATACAAGTAACAT TERM 261 646747 - 646761 + G 71 -5 -4.72188 | opp_overlap 646749, overlap 646749 CTATACCTGGAATGA TAGAGA AGA TCTCTG TTTATTTTGGCTTCA APH_0617 646482 - 646808 + | hypothetical protein TERM 262 646816 - 646798 - f 74 -3.8 -5.12068 | opp_overlap 646798, overlap 646799 646801 TACACTCAATAAAAA TCAGGCAA TAA TTGCCTAG GTACATTCCCCTGTG APH_0618 647006 - 647119 + | hypothetical protein APH_0619 648384 - 648479 + | hypothetical protein APH_0620 648907 - 648999 + | hypothetical protein APH_0621 649201 - 649094 - | hypothetical protein ksgA 650311 - 649502 - | dimethyladenosine transferase tpiA 650446 - 651252 + | triosephosphate isomerase APH_0625 651311 - 652279 + | immunogenic protein APH_0626 652281 - 653309 + | metalloendopeptidase glycoprotease family APH_0627 653907 - 653302 - | RDD family protein TERM 263 653371 - 653381 + g 71 -2.4 -5.10461 | overlap 653364 ATTCGCCAGCATGTC GTGC CAT GCCC TTTTTCTTGAGTCAA folB 653978 - 654328 + | dihydroneopterin aldolase mdh 654397 - 655362 + | malate dehydrogenase, NAD-dependent APH_0630 655647 - 655763 + | hypothetical protein APH_0631 656221 - 656379 + | hypothetical protein TERM 264 657725 - 657735 + F 70 -3.2 -4.91473 | TTAGGTTGAGGTTGG GGTT TTG AGCC TTTATTTTTGCCTTG APH_0633 658192 - 658512 + | hypothetical protein APH_0634 658529 - 659086 + | hypothetical protein APH_0635 659083 - 659481 + | hypothetical protein APH_0636 659462 - 659851 + | hypothetical protein APH_0637 660045 - 659923 - | hypothetical protein APH_0638 660763 - 660951 + | hypothetical protein TERM 265 661803 - 661815 + F 75 -7.7 -4.08216 | TTCGGTATATTCTAT GTGCT GCA AGCAC TTTTAGAAAAAATGC TERM 266 663576 - 663590 + F 75 -2.9 -5.28942 | CAACAAGCCCTTATT TATAG CCTAT CTATA TTTTTCTTTGCCGTA APH_0640 663792 - 663902 + | hypothetical protein APH_0641 664419 - 663853 - | hypothetical protein rpiB 667012 - 666581 - | ribose 5-phosphate isomerase B TERM 267 667182 - 667194 + H 79 -9.1 -3.81951 | AAGTGTATTACTGTC GCGAG GCA CTCGC TTTGGTAGTCTGCAA APH_0643 667318 - 667584 + | hypothetical protein APH_0645 669393 - 669301 - | hypothetical protein TERM 268 669394 - 669406 + r 76 -3.3 -5.2112 | opp_overlap 669394, overlap 669386 TTCCCATGCGCACAA CGCAG CGC CTTCG TTTTTTACTCGTATT acpS 669863 - 669495 - | holo-(acyl-carrier-protein) synthase proS 671140 - 669860 - | prolyl-tRNA synthetase TERM 269 671386 - 671363 - R 73 -5.4 -4.56597 | opp_overlap 671351 GTGTGTGCTTAAAAA GCCATTATCT AGAG AGATAATAAC CTAATTGCAGCATAA TERM 270 671636 - 671624 - R 70 -2.7 -5.02323 | TTATGAGAAATAAAA TTCCT ATA AAGAA AAGCAGCGTGAATTC TERM 271 671956 - 671934 - R 72 -3.5 -5.02323 | TGACGATAAAGAAAA TCTTCAATA ATCGA TATTGCAGA GAGCGCAGCTTTATA APH_0648 672925 - 671915 - | hypothetical protein TERM 272 673060 - 673033 - H 71 -4.8 -4.57073 | opp_overlap 673054, overlap 673034 673054 CAGGCCTGGTAAAAA CGCAGAGCAATG ACTA CACGACTCTGCA CGAGATCAGAGGTAT coaD 673178 - 673684 + | pantetheine-phosphate adenylyltransferase APH_0652 674439 - 674546 + | hypothetical protein APH_0653 674705 - 675214 + | hypothetical protein APH_0654 675187 - 675297 + | hypothetical protein APH_0655 675288 - 675509 + | hypothetical protein APH_0656 675538 - 675801 + | hypothetical protein APH_0657 675947 - 676165 + | hypothetical protein trxB 677530 - 676565 - | thioredoxin-disulfide reductase APH_0659 678147 - 677536 - | anti-oxidant AhpCTSA family protein TERM 273 678779 - 678754 - g 80 -9.9 -3.59698 | gap 1 GCAGTGCATATATAA CCT-GTTTATGG CTA CCATAAACGAGG GAGATGAGGTTATTA aspC 678443 - 679627 + | aspartate aminotransferase TERM 274 679943 - 679964 + F 79 -5.9 -4.84914 | overlap 679941 AGGAATATGTGTACT CTCTCTTTT GGAA AGAAGGGAG TTTTGTTATATAGAT APH_0661 679950 - 680069 + | hypothetical protein p44-70 680648 - 681976 + | P44-70 outer membrane protein TERM 275 681991 - 682018 + F 71 -7 -4.11394 | gap 1, overlap 681993 GGGTGATTGGTGGAT CTGGGG-GGAGGT AGA GCCTCTGCCCTAG TTTTAGGAGTAAAGT p44-71 682036 - 683325 + | P44-71 outer membrane protein p44-72 683389 - 684696 + | P44-72 outer membrane protein APH_0665 685494 - 685640 + | hypothetical protein APH_0666 686119 - 685928 - | hypothetical protein APH_0667 687244 - 687131 - | hypothetical protein fabG 688132 - 687395 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 276 688844 - 688829 - g 86 -7.6 -4.58283 | TAATCTCCTGAAAAA TATGGG AGAG CCCATA ATAAGGAAAGCTGCT putA 688365 - 691502 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 277 691520 - 691551 + T 70 -3.6 -4.90296 | overlap 691510 GAAAACTTGGAGGAA GCGTAGTCTAACCT TTAA GGGGTATGCTGCGC TTTTTCTGAGCTTTT APH_0670 693099 - 692944 - | hypothetical protein APH_0671 693781 - 693071 - | hypothetical protein APH_0672 693873 - 693974 + | hypothetical protein TERM 278 693981 - 693998 + F 73 -7.7 -3.80893 | GAATTGTGAGGTTGT CGTGTTG ATGA CAACGCG TTTGCGTTATGCCGT TERM 279 694179 - 694159 - g 74 -6.7 -4.30844 | opp_overlap 694153 AGGGGATTAGTAAAA CCCACTAGG GGG CCTGGAGGG GGGTACTCTTTAGGC APH_0673 694078 - 695538 + | rrf2 family protein /cysteine desulfurase TERM 280 695584 - 695605 + G 82 -4.5 -5.32944 | gap 1, opp_overlap 695587, overlap 695585 695587 GAAAAATAATGAGGA TA-AGGGAGC GAA GCTTCCTGTA TTTTTTGATTATCAG TERM 281 695587 - 695601 + G 70 -7.8 -3.71857 | opp_overlap 695587, overlap 695585 695584 AAATAATGAGGATAA GGGAGC GAA GCTTCC TGTATTTTTTGATTA iscS 695567 - 696805 + | cysteine desulfurase iscU 696821 - 697213 + | scaffold protein APH_0676 697239 - 697604 + | iron-sulfur cluster assembly accessory protein hscB 697597 - 698037 + | co-chaperone protein hscB hscA 698028 - 699806 + | chaperone protein HscA APH_0679 699861 - 700211 + | iron-sulfur cluster-binding protein TERM 282 700288 - 700309 + G 70 -2.9 -5.03715 | overlap 700290 AATCTTGTTGTTGGG TGCTCTCGT GTCT GCGGGAGTG TTTTTTGGAGCTCGT APH_0680 700241 - 701410 + | hypothetical protein APH_0681 702109 - 702017 - | hypothetical protein APH_0682 702224 - 702075 - | hypothetical protein APH_0683 705570 - 702931 - | hypothetical protein APH_0684 706087 - 705884 - | hypothetical protein APH_0685 706258 - 706353 + | hypothetical protein TERM 283 706568 - 706587 + G 100 -8.6 -4.98616 | overlap 706559 TTCCGACAGTTTCGG TAGCTGCT TTTA GGCAGCTA TTTTTCATCTTTTGA APH_0686 706501 - 706602 + | hypothetical protein APH_0687 706914 - 707321 + | cytochrome c biogenesis family protein TERM 284 708318 - 708329 + F 75 -3 -5.30686 | ATAAGGACTTTGTAG CATA TCTG TATG TTTTTTATAGGTCTT APH_0688 709047 - 709883 + | phage protein TERM 285 710242 - 710268 + F 70 -3.1 -5.00616 | gap 1, opp_overlap 710236, overlap 710246 ATACATAAAGCAGCA TTTATA-CGCAG CTTA CTGCGCTATGGA TTTTTTAGGAGGCGC APH_0689 711102 - 711200 + | hypothetical protein mraW 711865 - 712752 + | S-adenosyl-methyltransferase MraW TERM 286 713456 - 713470 + F 79 -5.8 -4.83615 | opp_overlap 713456 713455 GTTATACGTGAGAAT TAAAGT AAA ACTTTA TTTTTGTGAAAAATA TERM 287 714673 - 714683 + G 78 -4 -5.18643 | GAAGGTGCGGGTATG GATT TTC AATC TTTTCTTTTAATTCG APH_0691 714592 - 714828 + | hypothetical protein APH_0692 714976 - 715146 + | hypothetical protein APH_0693 716124 - 715600 - | 5-formyltetrahydrofolate cyclo-ligase family protein TERM 288 716298 - 716320 + r 70 -9.2 -3.25223 | opp_overlap 716298 TTGTTCTCTATGCAA CTTCTTCTGT AGT ACAGAGGAGG TTAGTGGTATACATA obgE 717703 - 716645 - | GTPase ObgE eno 718997 - 717708 - | enolase APH_0696 719562 - 719248 - | hypothetical protein rplU 720063 - 720362 + | 50S ribosomal protein L21 rpmA 720366 - 720641 + | 50S ribosomal protein L27 argS 722086 - 723828 + | arginyl-tRNA synthetase TERM 289 723947 - 723958 + F 70 -3 -5.16969 | CTTTGAAAAAGCAGC CAAT CTGA ATTG TTTGTTTTTTATATA APH_0701 724242 - 724364 + | hypothetical protein APH_0702 724821 - 724699 - | hypothetical protein APH_0703 725614 - 725453 - | hypothetical protein APH_0704 725750 - 725646 - | hypothetical protein pmbA 727290 - 725959 - | pmbA protein folE 727908 - 727300 - | GTP cyclohydrolase I atpG 728770 - 727913 - | ATP synthase F1, gamma subunit TERM 290 728347 - 728336 - G 85 -2.2 -5.87996 | CAATGAATAAAAAAA GCCT TTAA AAGC ATAAAATCCTAAATT APH_0708 731284 - 729515 - | hypothetical protein TERM 291 732475 - 732464 - H 70 -3 -5.13521 | AAATCAGTTAAAAAA GAAA ATTT TTTC CCTCTGTAGTTGAGG TERM 292 734512 - 734526 + G 70 -2.9 -5.07567 | GACAATCTACCCTGA GATAA GTACG TTATC TTTTTTAAAATATCA TERM 293 735910 - 735895 - g 70 -7.6 -3.71792 | TCAAGGTAAAATGAA GAAGTC CAGG GACTTC TATGCAGCTTGGTGT TERM 294 738056 - 738068 + G 77 -6.3 -4.63932 | opp_overlap 738049 738056 AAAAAACATAAGGAA CTTCT TGA AGAAG TTTTCTTAAAGCATA APH_0709 732572 - 742693 + | ankyrin repeat-containing protein TERM 295 742704 - 742737 + T 90 -9 -5.05782 | overlap 742705 GGTAATATCGCATTT AGGGCTATATTGAG GTAATA TTCAATATAGCCCA TTTTTTAAAATACGT TERM 296 742705 - 742736 + T 90 -12.5 -3.62746 | overlap 742704 GTAATATCGCATTTA GGGCTATATTGAG GTAATA TTCAATATAGCCC ATTTTTTAAAATACG TERM 297 742864 - 742836 - T 71 -4 -4.91109 | gap 1, opp_overlap 742836 TGGGTATCATAAAAA CTCTGTTCTA-AG TGCT CTATAGAAGAGAG TTTAGAGAATACTTT APH_0710 743004 - 742903 - | hypothetical protein nuoH 744274 - 743252 - | NADH dehydrogenase subunit H nuoG 746399 - 744321 - | NADH dehydrogenase subunit G TERM 298 744918 - 744898 - G 75 -8.3 -3.81137 | overlap 744902 TCTGAAACACCGAAA TTCACCGGA TCT TCCGGCAAA AAACCAACATCTAAA APH_0713 746762 - 746409 - | hypothetical protein APH_0714 746952 - 746809 - | hypothetical protein APH_0715 747108 - 746983 - | hypothetical protein gyrB 749553 - 747172 - | DNA gyrase, B subunit TERM 299 749042 - 749031 - G 100 -5.8 -5.83211 | CAGTAAAAGAAAAAA CGTC GGAA GACG GCATGAAACGAACGC APH_0717 750383 - 750177 - | hypothetical protein APH_0718 752369 - 750402 - | hypothetical protein TERM 300 751895 - 751909 + g 72 -10 -2.81133 | opp_overlap 751878 751875, overlap 751875 GCATCCTATACGGAT GGCCTA TAT TAGGCC TATAATCACTGCATC APH_0719 752566 - 752420 - | hypothetical protein TERM 301 752869 - 752886 + r 73 -7.1 -4.12416 | opp_overlap 752869 TGGGAATTACCTAAA GGAAATT TATA AATTTCC TTATCTTTTCTTCTT TERM 302 753104 - 753071 - R 73 -10.4 -2.88758 | opp_overlap 753069 753068 ATAAGCGTTTATATA CCTGGAGATGCG GCTTTAAATT CGCATCTCCAAG CACTTTTATTACTAC APH_0720 762273 - 753157 - | hypothetical protein TERM 303 755353 - 755369 + g 81 -9.5 -3.88291 | TACATGATTCTTCTC CTGTAGA CCA TCTACAG TTTCTGCGCGTAGTA TERM 304 756450 - 756465 + g 77 -6.2 -4.68103 | overlap 756435 TCGCTTCTTGAAGGC GATTCT TTTG AGAATC TTTTGTTACAGTTGC APH_0721 763678 - 763574 - | hypothetical protein APH_0722 763808 - 763668 - | hypothetical protein APH_0723 764975 - 764196 - | hypothetical protein TERM 305 765071 - 765058 - R 88 -3.9 -5.85737 | ATAGCAACAAAAAAA TTAAC GTAG GTTAA GGATTATGAGAATTA APH_0724 768680 - 765105 - | hypothetical protein TERM 306 765182 - 765157 - G 71 -8.3 -3.41024 | gap 1, overlap 765155 765159 TCTTGCAATACAAGA GACGATGGAGGG TTC CCCTCAATCG-C AGCATTCCCATAGCT TERM 307 765181 - 765159 - G 89 -12 -3.27382 | overlap 765157 765155 TTGCAATACAAGAGA CGATGGAGGG TTC CCCTCAATCG CAGCATTCCCATAGC APH_0725 769136 - 769011 - | hypothetical protein TERM 308 770637 - 770626 - g 78 -5.8 -4.83518 | opp_overlap 770626 770625 AATAATAATAGAAAA CGGA AAAC TCCG CTTATTGAATATGGG TERM 309 771586 - 771574 - g 78 -4.1 -5.09895 | opp_overlap 771574 TAGGGACGGAAAAAA TAGCC CTC AGCTA TACTTCCAGGAGCAA APH_0726 769457 - 771718 + | hypothetical protein TERM 310 771814 - 771850 + F 100 -20.4 -3.8579 | opp_overlap 771824 GTAATGGTGAATTCC TCTGACACAAGCTCCA AGGAA TGGGGCTTGTGTCAGA TTTGGCTTGTTAGAT APH_0727 772433 - 772531 + | hypothetical protein APH_0728 773485 - 772580 - | hypothetical protein TERM 311 773006 - 773019 + g 74 -4.5 -4.8622 | TCCGAAAAATGTTAA GCATG CAGG CGTGC TTTTTCCTTGGACAA TERM 312 774363 - 774375 + r 75 -7.7 -4.08216 | TTCGGTATATTCTAT GTGCT GCA AGCAC TTTTAGAAAAAATGC dnaQ 776063 - 775329 - | DNA polymerase III, epsilon subunit nuoE 776568 - 776053 - | NADH dehydrogenase subunit E nuoD 777752 - 776565 - | NADH dehydrogenase subunit D APH_0733 778237 - 778109 - | hypothetical protein TERM 313 778353 - 778364 + G 75 -5.8 -4.6856 | CTATAGTAGGTGCAG GTCC TGTG GGAC TTTTTACCGTGTTTC APH_0734 778310 - 779326 + | pyridine nucleotide-disulphide oxidoreductase family protein thiL 780131 - 781087 + | thiamine-monophosphate kinase TERM 314 781559 - 781549 - g 79 -6.8 -4.74052 | ACTAAACAAAAAGAA GCAG TCT CTGC AGATTGGAGATAGAG recO 781424 - 782161 + | DNA repair protein RecO APH_0737 782378 - 782839 + | hypothetical protein TERM 315 784003 - 783988 - T 95 -6.1 -5.55769 | TTTCATAACAAAAAA GCCCT TTCAGC AGGGC AGTCAAAAAGGATTA APH_0739 784610 - 784257 - | hypothetical protein ank 788498 - 784800 - | ankyrin TERM 316 788459 - 788472 + g 89 -3.8 -5.64321 | TGATAATGGCTTGCA GAGC ACCGGC GCTC TTTTTCTTTTCTTCT APH_0741 789180 - 789046 - | hypothetical protein TERM 317 789184 - 789172 - G 75 -3.4 -5.0925 | TTGGAAAACTAAAAA GCTT GCCAT AAGC GCAATGTATTCTGAA APH_0742 789644 - 789495 - | hypothetical protein APH_0743 789943 - 789719 - | hypothetical protein APH_0744 790137 - 789976 - | hypothetical protein TERM 318 790166 - 790196 + r 71 -7.6 -3.83205 | opp_overlap 790154 790166 790165 AACCCAAATAAAACT CGGTCTATGCAGCT TAT AGCTATATAGACAG TTTCCTATAAGCGGT murB 791318 - 790410 - | UDP-N-acetylenolpyruvoylglucosamine reductase hemC 792207 - 791293 - | porphobilinogen deaminase TERM 319 791901 - 791885 - GR 80 -3.7 -5.34555 | TTAGATGATAAAAAA GCATC TAAAGCT GATGC CCTGGGCAAAATACA folC 793693 - 792404 - | folylpolyglutamate synthase TERM 320 794470 - 794457 - g 71 -3.1 -5.06414 | overlap 794458 794466 CTTTTGTAACAAAAA CGCAA GACA TTGCA TTAGAGCAAGCAAGA gatA 794318 - 795793 + | glutamyl-tRNA(Gln) amidotransferase, A subunit ubiX 797128 - 796559 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 321 796684 - 796704 + g 72 -7.5 -4.0641 | overlap 796685 AAAAAGATGGTATGG GCGGAGCGA TAA TTGCTCCGA TTTCTGTAAGTGCAG TERM 322 796685 - 796703 + g 79 -11 -3.03525 | overlap 796684 AAAAGATGGTATGGG CGGAGCGA TAA TTGCTCCG ATTTCTGTAAGTGCA TERM 323 796758 - 796748 - G 71 -6.8 -4.20136 | ATGCCCAAAATGAAA GGGA GTT TCCC GCAGCATCAGTACCA APH_0750 797244 - 797477 + | hypothetical protein APH_0751 797503 - 797679 + | hypothetical protein APH_0752 798096 - 797947 - | hypothetical protein TERM 324 798148 - 798138 - H 71 -6.8 -4.12599 | opp_overlap 798137 AATAAGCCTTTAAAA CCTC ATT GAGG ATAATATATACTCTA APH_0753 798211 - 798372 + | hypothetical protein TERM 325 798481 - 798493 + T 71 -6.3 -4.25104 | AGAGGTAGAGTGTTA TTGTC ATG GACAA TTTTACTAAGCAGCA APH_0754 800373 - 798820 - | magnesium chelatase subunit D/I family protein TERM 326 799115 - 799129 + g 70 -3.6 -4.81082 | CTCATGACCCTTCTT TTCATT TCT GATGAA TTTTCTTCCTTGCTT APH_0755 800560 - 801237 + | hypothetical protein APH_0756 801716 - 803695 + | hypothetical protein APH_0757 803751 - 803900 + | hypothetical protein APH_0758 804095 - 804214 + | hypothetical protein rpoH 806613 - 805744 - | RNA polymerase sigma-32 factor APH_0760 807111 - 806944 - | hypothetical protein APH_0761 808494 - 807157 - | phage uncharacterized protein TERM 327 809346 - 809328 - R 83 -6 -5.04733 | CAAGTATAAACAAAA CTTTTCCG ATG CGTAAAAG CCCAAAATAATCTGA APH_0762 809755 - 809594 - | hypothetical protein APH_0763 810053 - 809952 - | hypothetical protein TERM 328 810534 - 810518 - R 74 -3.7 -5.0925 | overlap 810520 TGGTAAAATTAAAAA TCGTCTT ACT AAGAAGA CCGTACCTCGCTAAT APH_0764 810919 - 810767 - | hypothetical protein lepA 812804 - 811008 - | GTP-binding protein LepA TERM 329 812933 - 812945 + r 74 -4.9 -4.67607 | CCTACCACTTCTCCA TCAAA CAA TTTGA TTTCTTTATTACACG APH_0766 813805 - 813020 - | hypothetical protein TERM 330 813728 - 813701 - G 100 -12.8 -4.25681 | ATCCAACTGAAGAAA GGCTACTCTACC AGCA AGTAGAGCAGCC ACCTCAAAAAAAATT pnp 816327 - 813811 - | polynucleotide phosphorylase/polyadenylase rpsO 816664 - 816383 - | 30S ribosomal protein S15 truB 817601 - 816699 - | tRNA pseudouridine synthase B mreB 817859 - 818893 + | rod shape-determining protein MreB TERM 331 819163 - 819146 - T 72 -8.5 -3.53811 | opp_overlap 819146 819143 TTTACTGCTTGTAAA CGCATAT GGCC ATATGCG TAATTCCTAACTATA TERM 332 819433 - 819457 + T 81 -7 -4.7078 | opp_overlap 819429 819433, overlap 819428 819426 ACTTTTACGAAGGCA CGGTGCCGTC TATGT GCAGGCACCG TTTTTCGCTAATTGG APH_0771 819946 - 819488 - | hypothetical protein APH_0772 820071 - 819961 - | hypothetical protein APH_0773 820553 - 820044 - | hypothetical protein APH_0774 820725 - 820579 - | hypothetical protein APH_0775 821363 - 820890 - | hypothetical protein APH_0778 822560 - 822736 + | hypothetical protein APH_0779 822779 - 823009 + | hypothetical protein coaE 823955 - 823281 - | dephospho-CoA kinase APH_0781 824027 - 824293 + | hypothetical protein APH_0782 824480 - 825082 + | Sua5/YciO/YrdC/YwlC family protein APH_0783 825070 - 825948 + | hypothetical protein TERM 333 825960 - 825946 - f 75 -2.8 -5.22039 | opp_overlap 825946 CTCAAATCCAAAAAA TAGGGA TAT TGCCTA GTGTTCATGTTCTCA hup 826141 - 826416 + | DNA-binding protein HU APH_0785 826508 - 826651 + | hypothetical protein APH_0786 826760 - 826900 + | hypothetical protein TERM 334 827078 - 827090 + F 76 -3.3 -5.28942 | opp_overlap 827078 ATATAACTATAAATA GAGAG TGC CGCTC TTTTTGTTTAACCTA APH_0787 827565 - 827690 + | hypothetical protein APH_0788 828821 - 828693 - | hypothetical protein TERM 335 828910 - 828887 - g 84 -5.4 -5.29782 | opp_overlap 828887 828885, overlap 828874 CACATCTACAAAAAA TCAAGAAG AGCATATA CTTCTTGA TATTTCTAGATGATA APH_0789 828828 - 828923 + | hypothetical protein pdxJ 830393 - 829692 - | pyridoxal phosphate biosynthetic protein PdxJ APH_0791 831158 - 830622 - | putative nicotinate (nicotinamide) nucleotide adenylyltransferase APH_0792 831358 - 832392 + | hypothetical protein APH_0793 836862 - 834124 - | hypothetical protein TERM 336 835635 - 835615 - G 79 -6.9 -4.65584 | overlap 835606 AGAAATGAGATAAAA CCTCTCGAA TTT TTCAAGAAG CCCCATGAATACCGG TERM 337 835725 - 835710 - G 71 -4.6 -4.61147 | overlap 835711 TAACATCACATAAAA GCGGGT AACT ACCCGG AGCAACAACACGATG TERM 338 836227 - 836201 - G 71 -2.3 -5.10497 | gap 1 AACGCACTCAAAAAA CCTGCCGC-TGA TTCA TCATGCAACAAG GCACTTCCGTCCATA TERM 339 836741 - 836719 - G 70 -7.8 -3.59405 | overlap 836720 836727 836730 AAAATCACTACACAA CCTCAGAAGA CCA TCTTCTGAAA GATGCGTCTCAGAGA APH_0794 838951 - 838232 - | hypothetical protein APH_0795 839443 - 838979 - | anti-oxidant AhpCTSA family protein ileS 839912 - 843202 + | isoleucyl-tRNA synthetase APH_0797 843481 - 843326 - | hypothetical protein APH_0798 843430 - 843549 + | hypothetical protein APH_0799 843911 - 843741 - | hypothetical protein APH_0800 844469 - 844341 - | hypothetical protein nuoI 845326 - 844832 - | NADH dehydrogenase subunit I lepB 846059 - 845328 - | signal peptidase I TERM 340 846106 - 846095 - R 74 -4.4 -4.93365 | TCTCACAACGAAAAA CTGT TCCC ACAG CCACAACCAAACTTT APH_0803 846528 - 846082 - | iron-sulfur cluster assembly accessory protein APH_0804 847951 - 847775 - | hypothetical protein TERM 341 850702 - 850674 - g 75 -8.9 -3.61894 | overlap 850677 AATTCTCTTGAACAA GAAGACGTCGA GTCCTTA TCGTCGTCTTC AGAAGAAACGGTTAT APH_0805 848424 - 850964 + | hypothetical protein APH_0806 850980 - 851087 + | hypothetical protein TERM 342 852617 - 852597 - g 95 -4.7 -5.76237 | overlap 852577 TATACAAAGAAAAAA GTGATAAAC CTA GTACATCAC ACTTATCACTAAAAA APH_0807 851240 - 853024 + | hypothetical protein TERM 343 855898 - 855915 + G 73 -2.7 -5.08824 | overlap 855894 GTCACTATACCGCAG TTGTTGC TCTT GAAACAA TTTTTTACATGGAAG TERM 344 856076 - 856061 - g 73 -9 -3.55444 | TGTTGATTGTGTAAA CAGTCC TGCA GGACTG CGCCAAGGAGTTGTG APH_0808 854136 - 856673 + | hypothetical protein TERM 345 856834 - 856786 - T 79 -10.6 -3.13867 | opp_overlap 856791, overlap 856784 856789 GTACTTAGCAAGACA GCACAGCACTCTGGATAACAC-AT ATA ATAGTGTTATCTAGAG-GCTGTTC CAGGTGCTATAGGAG TERM 346 856831 - 856789 - T 77 -10.9 -2.77148 | opp_overlap 856791, overlap 856786 856784 CTTAGCAAGACAGCA CAGCACTCTGGATAACAC-AT ATA ATAGTGTTATCTAGAG-GCTG TTCCAGGTGCTATAG TERM 347 856791 - 856829 + T 72 -9.9 -3.0497 | gap 2, opp_overlap 856789 856786 856784 TAGCAAGACAGCACA GCACTCTGGATAACACATA TAA TA-GTGTTATCTAGAG-GC TGTTCCAGGTGCTAT APH_0809 857030 - 856818 - | hypothetical protein APH_0810 857580 - 857464 - | hypothetical protein TERM 348 859223 - 859254 + G 73 -8.2 -3.60098 | gap 1 TTCGTAGGGTATTGT TTCTGGTATCTGCTA TCC TAGCAGATAC-AGCA TTTCCCGTGAGCCCT APH_0811 857899 - 860214 + | hypothetical protein TERM 349 860372 - 860408 + F 70 -9.6 -2.5409 | gap 1, opp_overlap 860372, overlap 860380 AGGACTTAGAAAACG TGTCAGGC-TTGTGCAA TTTA TTGCACGATGTCTGGCA TACGTTCAGAGTTAT TERM 350 861516 - 861532 + F 73 -8.7 -3.75629 | TCAGTAATCGTTGTT GGGTATC ATT GATGCCC TTTCCCTTAGAAATA TERM 351 861652 - 861676 + F 71 -5.1 -4.56702 | opp_overlap 861653, overlap 861653 GCTCTTCAGGAGATA ATGTATATTAC ACC GTAATGTACAC TTTATTTGCTTGAAA TERM 352 861653 - 861675 + F 70 -8.6 -3.33298 | opp_overlap 861653, overlap 861652 CTCTTCAGGAGATAA TGTATATTAC ACC GTAATGTACA CTTTATTTGCTTGAA TERM 353 862868 - 862846 - g 76 -9.2 -3.54129 | TATACTGGGTCTAAA TGAGAGTATG TCA CTTACTCTCA CAATGATGCATCATT APH_0812 861914 - 863614 + | hypothetical protein APH_0813 863750 - 864301 + | ATP synthase F1, gamma subunit, truncated APH_0814 864306 - 864806 + | GTP cyclohydrolase I, internal deletion TERM 354 865244 - 865265 + G 74 -8.1 -3.94002 | opp_overlap 865244 AATTTCTGAAGCTAA TGCTATTGA GCTA TCAATGGCA TTTGATTCCCTAATC APH_0815 865206 - 867134 + | hypothetical protein TERM 355 867312 - 867300 - g 70 -7.7 -3.64984 | overlap 867298 ATATGCTTGAAAATA CCCTT ATT AAGGG AAAAAGCAGAAGATC APH_0816 867236 - 867340 + | hypothetical protein APH_0817 867787 - 867912 + | hypothetical protein APH_0818 868351 - 868040 - | hypothetical protein TERM 356 868426 - 868410 - H 74 -3.8 -5.16472 | AAAAACCCTAAAAAA TTTTGT CCTGC ACAAAA AAAATATTAAGAAAA TERM 357 869782 - 869796 + G 72 -10 -2.87344 | opp_overlap 869780 GCATATATATCAATG CTCTGG ATA CCAGAG TATATAGAGCAGCTA APH_0819 868504 - 869916 + | hypothetical protein TERM 358 870918 - 870933 + G 72 -6.2 -4.30576 | CACAAGATCTTGCCC TCAAAG AAAT CTTTGA TTTTGGTAATGACCG APH_0820 870122 - 871762 + | hypothetical protein TERM 359 871823 - 871845 + T 100 -9.9 -5.26155 | opp_overlap 871823 GCAATAACTGCAAAA GGGCACGTT ACAAC AATGTGCCC TTTTTATCTTTCTAT TERM 360 871845 - 871823 - T 82 -8.4 -4.24123 | opp_overlap 871823 GCAATAACTGCAAAA GGGCACGTTA CAA CAATGTGCCC TTTTTATCTTTCTAT APH_0821 872244 - 872002 - | hypothetical protein APH_0822 872410 - 872228 - | hypothetical protein APH_0823 873500 - 872490 - | hypothetical protein APH_0824 874296 - 873733 - | hypothetical protein APH_0825 875628 - 874624 - | hypothetical protein APH_0826 875739 - 875921 + | hypothetical protein APH_0827 877036 - 877434 + | hypothetical protein APH_0828 878454 - 878347 - | hypothetical protein TERM 361 878742 - 878752 + G 79 -6.8 -4.59109 | opp_overlap 878741, overlap 878751 GAAATGCCAGCATAG GCTC CGT GAGC TTTTTGGAAGCTGTA TERM 362 879382 - 879404 + G 72 -7.1 -3.91032 | gap 1, overlap 879372 TGATCGCAGTAGGAT CAGCA-TGTG CTTA CACAGTGCTG TTTCTACGCTGATTG APH_0829 878687 - 880057 + | hypothetical protein APH_0830 880994 - 880818 - | hypothetical protein APH_0831 881237 - 881133 - | hypothetical protein APH_0832 881299 - 882735 + | hypothetical protein APH_0833 883018 - 883362 + | hypothetical protein APH_0834 883362 - 883871 + | hypothetical protein APH_0835 883844 - 883954 + | hypothetical protein APH_0836 883969 - 884427 + | hypothetical protein TERM 363 884482 - 884458 - f 81 -7 -4.7078 | opp_overlap 884458 884476, overlap 884473 884475 CCAATTAGCGAAAAA CGGTGCCTGC ACATA GACGGCACCG TGCCTTCGTAAAAGT APH_0837 884719 - 886128 + | hypothetical protein APH_0838 887127 - 888488 + | hypothetical protein TERM 364 888517 - 888550 + F 93 -13.9 -3.14211 | overlap 888505 GTTCATTTTGTGGTA TTGCTGTGCGCGCCT TTGT AGGTGCGTACGGCAG TTGCTACAAGCAGCT TERM 365 888550 - 888564 + F 74 -6.4 -4.33004 | overlap 888505 888557 TAGGTGCGTACGGCA GTTGCT ACA AGCAGC TTGTTTTGCTTGCAT TERM 366 888557 - 888567 + F 70 -5.4 -4.45664 | overlap 888505 888550 GTACGGCAGTTGCTA CAAG CAG CTTG TTTTGCTTGCATTAA TERM 367 889168 - 889155 - f 76 -6.7 -4.43844 | overlap 889158 CTAGTAGGCAGAAAA GCAGA CAAC TCTGC CGCTATCTGTAACTA TERM 368 889714 - 889724 + G 82 -8.2 -4.24786 | opp_overlap 889714 889713 GCCGCTTCCTACAAT GCCG CCT CGGC TTTATCTATTCTCCA APH_0839 889279 - 890607 + | hypothetical protein TERM 369 890649 - 890682 + F 100 -13.9 -3.85817 | overlap 890650 ATTCATTTTACGGTA TTGCTGTGCGCGCCT TTGC AGGTGCGTACGGCAG TTTCTACAAGCAGCT TERM 370 890650 - 890681 + F 95 -15.2 -2.91276 | overlap 890649 TTCATTTTACGGTAT TGCTGTGCGCGCCT TTGC AGGTGCGTACGGCA GTTTCTACAAGCAGC APH_0840 890654 - 890776 + | hypothetical protein APH_0841 891371 - 891219 - | hypothetical protein APH_0842 891462 - 892796 + | hypothetical protein TERM 371 892824 - 892850 + F 80 -11.6 -2.91873 | overlap 892821 TGTTGCGTGGTATTG CTGTGCGCATCT CAA AGGTGCGCACAA TGGTTTGAGCATAGT APH_0843 893091 - 894434 + | hypothetical protein APH_0844 895326 - 895478 + | hypothetical protein APH_0845 895842 - 895735 - | hypothetical protein TERM 372 896007 - 895995 - R 74 -9.1 -3.56262 | overlap 895993 896004 GAAACGTTACAAATA CCGCT AAT AGCGG GGTACAACGCTGCTC APH_0846 896541 - 896377 - | hypothetical protein APH_0847 897029 - 898558 + | hypothetical protein APH_0848 900071 - 898794 - | major facilitator family transporter TERM 373 899958 - 899943 - G 77 -6.2 -4.7254 | ACCTTGTACGAAAAA TACCTT ATTC AAGGTA CTACTCATTATACCG APH_0849 903051 - 900241 - | hypothetical protein APH_0850 903446 - 903300 - | hypothetical protein hemB 903572 - 904564 + | delta-aminolevulinic acid dehydratase APH_0852 904564 - 906366 + | putative glutamine-dependent NAD(+) synthetase APH_0853 906620 - 906327 - | hypothetical protein TERM 374 906936 - 906919 - H 71 -4.1 -4.99043 | opp_overlap 906921, overlap 906921 906925 CCGTGAGAAACAAAA CACACAG CCGC CTGTGTT GATGAACGAACTAAA TERM 375 906934 - 906921 - H 71 -6.7 -4.11748 | opp_overlap 906921, overlap 906919 906925 GTGAGAAACAAAACA CACAG CCGC CTGTG TTGATGAACGAACTA APH_0854 907064 - 907213 + | hypothetical protein APH_0855 908295 - 908158 - | hypothetical protein APH_0856 909580 - 909128 - | putative biotin--acetyl-CoA-carboxylase ligase, truncation mutS 912251 - 909789 - | DNA mismatch repair protein APH_0858 912564 - 912397 - | hypothetical protein TERM 376 913164 - 913151 - g 82 -6.7 -4.80396 | GAAAATAGTGAAAAA TCTGC ATCA GCAGA CGCTAAAAATAGATC APH_0859 912788 - 913549 + | hypothetical protein APH_0860 913551 - 913925 + | HIT family protein TERM 377 915525 - 915514 - g 71 -3 -5.06103 | ACAACTGGCAAAAAA TCTT TTAG AAGA TACGTGTATAGACCT APH_0861 914918 - 916249 + | HK97 family phage major capsid protein APH_0862 916870 - 916763 - | hypothetical protein kgd 920349 - 917632 - | alpha-ketoglutarate decarboxylase APH_0864 920484 - 920359 - | hypothetical protein APH_0866 921418 - 921546 + | hypothetical protein TERM 378 921629 - 921615 - g 81 -4.2 -5.36441 | TCGCCATAGAAAAAA GTGCGT GTG AAGCAC AGGTTAAGCTAGGTG purB 921530 - 922828 + | adenylosuccinate lyase APH_0868 923371 - 923159 - | hypothetical protein APH_0869 923499 - 923597 + | hypothetical protein APH_0870 924043 - 923795 - | hypothetical protein APH_0871 924240 - 924142 - | hypothetical protein APH_0872 924368 - 924466 + | hypothetical protein APH_0873 924675 - 924565 - | hypothetical protein APH_0874 927827 - 924684 - | hypothetical protein TERM 379 927073 - 927057 - G 78 -5.1 -4.9792 | opp_overlap 927057 927070 TACCCTAGATAAAAA TCGATGA TGC TCAGCGA ATTCCTGCGCTACTT APH_0875 929180 - 929043 - | hypothetical protein APH_0876 930738 - 930013 - | biotin--acetyl-CoA-carboxylase ligase APH_0877 931580 - 931488 - | hypothetical protein TERM 380 931734 - 931718 - H 79 -5.9 -5.00616 | TTCTCCTTGAAAAAA GCATTCT TGA AGAATAC AGTAAGCAACGATAG APH_0878 932795 - 934054 + | hypothetical protein APH_0879 935172 - 935423 + | hypothetical protein miaB 936942 - 935608 - | tRNA-i(6)A37 thiotransferase enzyme MiaB APH_0881 938158 - 938015 - | hypothetical protein APH_0882 939003 - 938803 - | hypothetical protein APH_0883 939199 - 939080 - | hypothetical protein uvrC 939819 - 941663 + | excinuclease ABC, C subunit TERM 381 942195 - 942209 + F 77 -8.6 -3.83844 | CTTATATCGTTATGG TACTCC CAT GGAGTA TTATTGCTTGATGCC APH_0885 942890 - 942988 + | hypothetical protein APH_0886 944922 - 944812 - | hypothetical protein TERM 382 944943 - 944896 - G 70 -5.6 -4.36914 | overlap 944918 GCTTTTGGCACAAAA TGCGCTACCATAGGCAATAATA GCCA CATTGCGGCATACAGTAGCGCA AATAGATACTTATCT APH_0887 945452 - 945345 - | hypothetical protein APH_0888 945796 - 945698 - | hypothetical protein TERM 383 946224 - 946243 + H 77 -6.4 -4.60797 | opp_overlap 946224 946222 946226, overlap 946226 GGTTGACTGACAACA CAGTACCA TTGG TGGTACAG TTTTATCTATACGGC TERM 384 946395 - 946381 - H 78 -2.8 -5.4505 | CTTCTTAACAAAAAA TTCTAG CCC CTTGAA AATACAATAATCTAG TERM 385 946774 - 946756 - H 71 -7.4 -3.89336 | opp_overlap 946756 946755 GGAATCAAATTGAAA TGGAGCGT ATA ACTCTCCA CTGTATTCTCTTTTG TERM 386 946943 - 946931 - H 70 -2.7 -5.01732 | AATCGTGTTAAAAAA CTATT AGA AACAG AAGGCTAAAAATCGC APH_0890 947368 - 947520 + | hypothetical protein APH_0891 947610 - 947512 - | hypothetical protein APH_0892 947765 - 947649 - | hypothetical protein TERM 387 947951 - 947969 + r 74 -6 -4.34482 | ATTATTCCTGGTGCG CTAGTAGC ATA GCTAGTAG TATTTTTTTGCAGCA htpG 950448 - 948535 - | heat shock protein 90 APH_0894 951143 - 950535 - | hypothetical protein TERM 388 951018 - 950990 - G 71 -6.8 -4.18494 | opp_overlap 950984 CATTTCGACGCAAAA CATCATAAATGG CATCT CCATCTTTGATG CGTTGCTTCTCGCTT APH_0895 951469 - 951894 + | putative transporter, truncation TERM 389 951952 - 951924 - T 73 -10.3 -2.83403 | opp_overlap 951928, overlap 951923 GGTTTCTTACTAAAG TCTAGCAGCCATT GTT AATGGCTGCTTGT TAGTTTCCTTTAGCT TERM 390 951928 - 951948 + T 100 -14.1 -3.94051 | opp_overlap 951924 951923 TCTTACTAAAGTCTA GCAGCCATT GTT AATGGCTGC TTGTTAGTTTCCTTT APH_0896 952687 - 952397 - | hypothetical protein nth 953442 - 952813 - | endonuclease III APH_0898 953995 - 953861 - | hypothetical protein TERM 391 954022 - 954003 - R 72 -4.4 -4.79352 | gap 1, overlap 954006 TCATGCATAATAAAA TAATACGCA TCC TGCGTA-TA CGGTCAAAAGCGTGC TERM 392 954020 - 954006 - R 87 -8.6 -4.49377 | overlap 954003 TGCATAATAAAATAA TACGCA TCC TGCGTA TACGGTCAAAAGCGT gyrA 957045 - 954325 - | DNA gyrase subunit A APH_0901 958349 - 958242 - | hypothetical protein TERM 393 959429 - 959417 - g 71 -3.3 -5.08088 | overlap 959424 AATGCCGAACAAAAA GAAGC AGT GCTGC AAGTAGCAGGCCCAG TERM 394 960111 - 960097 - g 74 -4.2 -4.96848 | GCGTCGACATAAAAA CCTATG CTG CGTAGG AGATGATGATCAATC APH_0903 959318 - 961297 + | UvrD/Rep family helicase APH_0904 961651 - 961869 + | hypothetical protein TERM 395 962373 - 962361 - g 80 -6.3 -4.84359 | CGATTCGTATAAAAA CAAGT CTA ACTTG TACGGCCATCAGTTT TERM 396 962449 - 962429 - g 73 -5.5 -4.71426 | GGTGCATCAATAAAA CATTTTACC CTA GACAAAATG TAAGTGCTCATATTG APH_0905 962047 - 963528 + | hypothetical protein TERM 397 963765 - 963798 + F 76 -11.1 -2.71144 | opp_overlap 963762 GACCTAAGAGCAGCG CATTGTGGCTATCAT ATCC GTGATAGCCACAGCG TCCTTGAAAAACATG TERM 398 964064 - 964076 + F 73 -7.7 -3.80881 | opp_overlap 964064, overlap 964062 AATGCTATATAAGCA CAGCA TCA TGCTG TTGTGTGTTTATCAT APH_0906 965395 - 969981 + | hypothetical protein APH_0907 970569 - 970246 - | hypothetical protein TERM 399 970444 - 970416 - G 71 -6.8 -4.18494 | CATTTCGACGCAAAA CATCATAAATGG CATCT CCATCTTTGATG CGTTTCTCTTCGCTT APH_0908 970709 - 970858 + | hypothetical protein APH_0909 970931 - 971944 + | putative twitching motility protein trmU 972352 - 973488 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 400 974034 - 974024 - T 78 -4 -5.1925 | overlap 974033 CCATAACGGAAAAAA CAAT AAA ATTG TCAGTCAATAACCTG APH_0911 974619 - 974125 - | Coq7 family protein APH_0912 975041 - 974949 - | hypothetical protein APH_0913 975254 - 975057 - | hypothetical protein TERM 401 976925 - 976898 - g 78 -9.2 -3.61001 | gap 1, overlap 976896 TTCCATAAAAATACA GGAGATGCTGTCA TTA CG-CAGCATCCCC CAAGATATTTCTCTA APH_0914 975927 - 977708 + | hypothetical protein TERM 402 978237 - 978226 - f 76 -2.2 -5.46657 | opp_overlap 978229, overlap 978228 TATGGTAACAAAAAA CGCT TCCT AACG GAAATTTGAAACTAT APH_0915 978591 - 979658 + | hypothetical protein TERM 403 979655 - 979645 - f 73 -6.8 -4.24342 | TGTCGCAGCAACAAA GGAG CGT CTCC TAAAGCATGCTGCTC TERM 404 979762 - 979750 - f 70 -3.3 -4.92757 | opp_overlap 979751, overlap 979751 TGATGAATAACAAAA CGAGC CAT GCTCT CTTATGTCGCTGAGT APH_0916 980404 - 981213 + | hypothetical protein TERM 405 981358 - 981336 - T 81 -12 -2.90075 | opp_overlap 981336 GCTGCTCTAATCATA CGCCCACTTA CTT TAGGTGGGCG TTCTATTACACAAAA TERM 406 981336 - 981358 + T 100 -14.2 -3.65812 | opp_overlap 981336 GCTGCTCTAATCATA CGCCCACTTA CTT TAGGTGGGCG TTCTATTACACAAAA APH_0917 981872 - 981348 - | hypothetical protein APH_0918 982284 - 983144 + | hypothetical protein TERM 407 983951 - 983912 - g 90 -2.3 -6.02345 | gap 2, opp_overlap 983925 983935, overlap 983914 983921 CAAGGATAAAAAAAA GACAACAAAGATAGCGCTA AAGA TAGCGCTATCTGCGC--TC ATGTTAGTACTGATG TERM 408 983951 - 983914 - g 91 -8.5 -4.6341 | opp_overlap 983925 983935, overlap 983912 983921 AGGATAAAAAAAAGA CAACAAAGATAGCGCTA AAGA TAGCGCTATCTGCGCTC ATGTTAGTACTGATG TERM 409 983944 - 983921 - g 100 -14 -4.62712 | opp_overlap 983925 983935, overlap 983912 983914 AAAAAAGACAACAAA GATAGCGCTA AAGA TAGCGCTATC TGCGCTCATGTTAGT APH_0919 983631 - 984767 + | hypothetical protein TERM 410 985406 - 985418 + F 74 -6.2 -4.42721 | TTTCTCATGTTTTAT GGGC AAGAG GCCC TTTATTCTCTGCTTG APH_0920 985713 - 985847 + | hypothetical protein APH_0921 986429 - 986295 - | hypothetical protein TERM 411 986736 - 986724 - R 74 -6.2 -4.42721 | CAAGCAGAGAATAAA GGGC CTCTT GCCC ATAAAACATGAGAAA APH_0922 988525 - 987164 - | hypothetical protein TERM 412 988179 - 988202 + g 100 -14 -4.55908 | opp_overlap 988171 988183, overlap 988172 ACTAACATGAGCGCA GATAGCGCTA TCTT TAGCGCTATC TTTGTTGTCTTTCTT APH_0923 989217 - 988744 - | DsbB family disulfide bond formation protein APH_0924 990089 - 989361 - | hypothetical protein rpmG 990231 - 990401 + | 50S ribosomal protein L33 APH_0926 990414 - 990575 + | hypothetical protein TERM 413 990606 - 990621 + T 76 -2.4 -5.48787 | CTAGTGTGGCTTAGG CCCTGC ACTT GCGTGG TTTTTTATCTCTTCT TERM 414 991403 - 991393 - T 81 -6.8 -4.80487 | opp_overlap 991393 GAGAAGCAAAACAAA GCCT GCA AGGC TATATCAAAATGTTG APH_0927 992062 - 991787 - | hypothetical protein APH_0928 994712 - 992052 - | ankyrin repeat-containing protein TERM 415 995337 - 995358 + H 95 -11.7 -4.44245 | opp_overlap 995341 GTGGAACTTACGTTA TATACAGCG AAAC CGCTGTATA TTTTCTGCGTACTAT TERM 416 995488 - 995511 + H 90 -3.1 -5.88476 | overlap 995489 GTATATTCTAGGACT TCACTGTTC TGATAC GGGCAGTGG TTTTTTCTTTATTTT APH_0929 995597 - 995851 + | putative acyl carrier protein fabF 995981 - 997252 + | 3-oxoacyl-(acyl-carrier-protein) synthase II APH_0931 997365 - 997472 + | hypothetical protein APH_0932 997683 - 997519 - | hypothetical protein APH_0933 997990 - 999024 + | putative DNA processing protein DprA APH_0937 1001701 - 1001552 - | hypothetical protein APH_0938 1001717 - 1002064 + | P44 outer membrane protein, C-terminal fragment mutL 1004141 - 1002237 - | DNA mismatch repair protein MutL TERM 417 1004335 - 1004355 + H 79 -5.4 -4.89477 | overlap 1004327 1004336 ACTTGTGTTTGGGAC ACCCTGAT TTATT ATCAGGGC TTTTGTTATTGACCA TERM 418 1004336 - 1004354 + H 74 -8.9 -3.52963 | overlap 1004327 1004335 CTTGTGTTTGGGACA CCCTGAT TTATT ATCAGGG CTTTTGTTATTGACC tolQ 1004418 - 1005122 + | TolQ protein APH_0941 1005421 - 1006248 + | TonB family protein APH_0942 1006313 - 1006426 + | hypothetical protein TERM 419 1006410 - 1006422 + T 70 -9.1 -3.1247 | opp_overlap 1006407 CTCTTGCAGATAGCG CCCTG CTG CAGGG TTGAGTATAGAAGGT APH_0943 1006947 - 1006855 - | hypothetical protein APH_0944 1008980 - 1007568 - | sensor histidine kinase argD 1009136 - 1010311 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein APH_0946 1010744 - 1010920 + | hypothetical protein APH_0947 1011257 - 1011165 - | hypothetical protein TERM 420 1011477 - 1011497 + r 77 -5.3 -4.91109 | opp_overlap 1011477 CCTTTCCCAAGTACA GGTCTTGCG ACA CGCTATACC TTTTTATAATAAACG APH_0948 1011655 - 1011491 - | hypothetical protein TERM 421 1012032 - 1012007 - H 70 -2.6 -5.1287 | TTTATAGCGAAAAAA TGAATTAGGC GCAGTT GCATAACTCA CATTAAACCATGTAA TERM 422 1012397 - 1012415 + G 77 -3.8 -5.15969 | overlap 1012398 1012401 GTTTCTAATGATGCT TGCAGAGA CTT TCTCTACG TTTTTTACATTAGCA TERM 423 1013213 - 1013201 - g 74 -7.7 -4.00476 | TAAACGTACCACAAA GTCGA TGC TCGAC GCGATACCTGGGGGA APH_0949 1012194 - 1013345 + | hypothetical protein TERM 424 1013725 - 1013707 - f 70 -3.1 -4.96848 | opp_overlap 1013707 TGCTCTACATAAAAA GCAACAC AAATG GTTTTGC TTTAAAGTTTGCACT APH_0950 1013774 - 1013941 + | hypothetical protein APH_0952 1014732 - 1014824 + | hypothetical protein APH_0954 1016226 - 1016074 - | hypothetical protein APH_0955 1018963 - 1016456 - | FtsK/SpoIIIE family protein APH_0956 1019460 - 1019182 - | YGGT family protein TERM 425 1020789 - 1020802 + G 79 -3.1 -5.28942 | overlap 1020790 AAGAGGGCGAGATGT TCCAT CTAC ATGGG TTTTTGTTTAAAATC APH_0957 1019633 - 1020901 + | CBS/transporter associated domain-containing protein TERM 426 1021510 - 1021492 - g 71 -4.5 -4.61633 | overlap 1021493 AGAGACCCGTAAAAA GCAGCAG GCTCA CTGCTGT GACTGAAGAAATAAA APH_0958 1021473 - 1021580 + | hypothetical protein APH_0959 1021897 - 1021992 + | hypothetical protein thiE 1022932 - 1022330 - | thiamine-phosphate pyrophosphorylase APH_0961 1024401 - 1023559 - | hypothetical protein APH_0962 1025388 - 1024549 - | rhodanese domain-containing protein APH_0963 1025612 - 1025421 - | hypothetical protein APH_0964 1026289 - 1025792 - | triple helix repeat-containing collagen fmt 1027254 - 1026349 - | methionyl-tRNA formyltransferase TERM 427 1026598 - 1026618 + g 74 -9.7 -3.1637 | TAAAGCCCGAATCCT GCGGCATAT CAC ATCTGCCGC TTCCTCAAAATCTAT APH_0967 1027682 - 1027590 - | hypothetical protein lon 1030186 - 1027778 - | ATP-dependent protease La clpX 1031420 - 1030173 - | ATP-dependent protease ATP-binding subunit clpP 1032025 - 1031432 - | ATP-dependent Clp protease, proteolytic subunit ClpP APH_0971 1033400 - 1032081 - | putative trigger factor TERM 428 1034222 - 1034246 + H 100 -12.2 -5.24989 | GAATGTTCGTAGGCA GTGCAGGCTG GGGTG CAGCTTGCAC TTTTTTGATATGTAA TERM 429 1034342 - 1034367 + G 76 -2.5 -5.27779 | gap 1, overlap 1034345 1034346 CTATAGCTCCTGGTA CTGTGG-GCAGC GCT GCTGCGCTATTG TTTTTTCCTCTTGCC TERM 430 1034345 - 1034364 + G 71 -5 -4.71318 | gap 1, overlap 1034342 1034346 TAGCTCCTGGTACTG TGG-GCAGC GCT GCTGCGCTA TTGTTTTTTCCTCTT TERM 431 1034346 - 1034362 + G 74 -7.9 -3.93875 | overlap 1034345 1034342 AGCTCCTGGTACTGT GGGCAGC GCT GCTGCGC TATTGTTTTTTCCTC TERM 432 1034714 - 1034737 + G 70 -7.4 -3.82084 | gap 1, opp_overlap 1034712, overlap 1034713 TAATGTTAGATGATG CAGCTGC-TGC AAT GCACGCTGCTG TTGTTACTCTTGCCG pgpA 1034275 - 1034775 + | phosphatidylglycerophosphatase A APH_0975 1034810 - 1035583 + | acetyltransferase TERM 433 1035676 - 1035690 + G 70 -2.8 -5.02287 | TTTTAGTTTTTGTCC TAGCGG TCT TTGCTA TTTTCTCTTTTTATG TERM 434 1035835 - 1035849 + G 75 -2.1 -5.36314 | opp_overlap 1035837 CTCCTAACCTACATA TACTG CTAAA CAGTG TTTTTTGCTCTTTTA TERM 435 1035921 - 1035911 - g 87 -5.4 -5.5604 | overlap 1035904 1035912 TCAACTAAGAAAAAA CTTC TCC GAAG CCCGGAGGATAAACA APH_0976 1035636 - 1036808 + | hypothetical protein APH_0977 1037069 - 1036872 - | hypothetical protein APH_0978 1037245 - 1037120 - | hypothetical protein TERM 436 1037435 - 1037447 + H 71 -4.8 -4.57073 | opp_overlap 1037434 1037435 AACGTACAAAATGAC CTCC AATGG GGAG TTTTTAGGGAACATC TERM 437 1037504 - 1037524 + H 70 -2.5 -5.14563 | overlap 1037506 AACTTTAATTCTTAC TCCAGAGAT ACA ATCTCGGCA TTTTTTCATACCCAG APH_0979 1037655 - 1038476 + | 8-amino-7-oxononanoate synthase, truncation APH_0982 1041796 - 1040936 - | putative cation ABC transporter, periplasmic cation-binding protein APH_0983 1041848 - 1042510 + | putative cation ABC transporter, ATP-binding protein ubiB 1042503 - 1043954 + | 2-polyprenylphenol 6-hydroxylase APH_0985 1044661 - 1044125 - | putative lipoprotein APH_0986 1045231 - 1046259 + | ABC transporter, ATP-binding protein tatA 1046278 - 1046448 + | twin arginine-targeting protein translocase recR 1046524 - 1047108 + | recombination protein RecR rpsD 1048289 - 1048903 + | 30S ribosomal protein S4 APH_0991 1049210 - 1049326 + | hypothetical protein TERM 438 1049875 - 1049885 + T 86 -4.6 -5.4593 | GGCATTGGGTTCTTG TCCC AGT GGGG TTTTTATTATTTTCC APH_0992 1050513 - 1050382 - | hypothetical protein thiD 1052086 - 1051289 - | phosphomethylpyrimidine kinase TERM 439 1051469 - 1051485 + g 76 -8 -4.13995 | GCATCCTGTGCCATG GAGCTC GCCAG GAGCTC TTTCATTTCTAAAGA APH_0994 1052741 - 1052079 - | hypothetical protein APH_0995 1053837 - 1052746 - | hypothetical protein TERM 440 1053107 - 1053095 - G 71 -3.3 -5.01553 | AACCCAGAAACAAAA CCCAT AAC AAGGG AATACTCAAGCCTTA TERM 441 1053149 - 1053139 - G 73 -5.4 -4.70353 | CACAACAAAGCAAAA GCTA TAG TAGC ATGCTAGCACGAGGC APH_0996 1054956 - 1054702 - | hypothetical protein TERM 442 1054774 - 1054750 - G 100 -13.7 -4.25104 | overlap 1054771 GGCCGTTGACGAAAA TGCATGTGTGC GTA ACACACATGCA AGAAACTTGCCAATC APH_0997 1056405 - 1055038 - | hypothetical protein TERM 443 1055941 - 1055951 + g 74 -4 -4.95547 | ATAACCCTCGCATGC GATT ACT AATC TTTTGTTCTTATAAC TERM 444 1056196 - 1056176 - G 72 -7.6 -3.89448 | overlap 1056171 GGCAAAAACACACAA GGCTGTTG CCTGT CAACAACC TGCGAAACAACCATC sdhD 1056932 - 1056603 - | succinate dehydrogenase, hydrophobic membrane anchor protein sdhC 1057319 - 1056936 - | succinate dehydrogenase, cytochrome b556 subunit TERM 445 1058848 - 1058819 - R 75 -10.3 -3.14132 | opp_overlap 1058819 CCCGTCTGCCACTAA CTATTCTTTATAG CAAG CTATAAAGAATAA TCCGTTCGACTTGCA TERM 446 1059092 - 1059068 - R 72 -8.6 -3.51202 | gap 1, overlap 1059064 1059071 CACCAAACTAATCAA GCACCAGAGCC ATCA AGCTCTGG-GC AGGAGTATCAGCTAT TERM 447 1059090 - 1059071 - R 73 -10 -2.88425 | overlap 1059068 1059064 CAAACTAATCAAGCA CCAGAGCC ATCA AGCTCTGG GCAGGAGTATCAGCT APH_1001 1060477 - 1059155 - | putative 3-phosphoshikimate 1-carboxyvinyltransferase APH_1002 1060601 - 1060500 - | hypothetical protein dnaE 1064112 - 1060729 - | DNA polymerase III, alpha subunit TERM 448 1061421 - 1061440 + g 100 -7.8 -5.48213 | TAAAAAGACTGAACT GGTGCGCA TCCA TGCTCACC TTTTTGTTTTCAATA TERM 449 1063058 - 1063037 - G 73 -10.1 -2.9062 | overlap 1063034 GCTATTAGAGAACCA GCCCCGGAA CCTC TTCCTGGGC CTACCATAATATCGT APH_1004 1064397 - 1064669 + | BolA protein APH_1005 1065139 - 1065282 + | hypothetical protein TERM 450 1065597 - 1065574 - T 77 -8.2 -4.21631 | opp_overlap 1065567 1065566 AACTTATTGAAGAAA TTTGTCTTCG TTTC CGAAGACCAA ACTAGATCTTAGTAT APH_1006 1065746 - 1065606 - | hypothetical protein APH_1007 1066036 - 1065923 - | hypothetical protein pdxH 1066752 - 1066132 - | pyridoxamine 5'-phosphate oxidase TERM 451 1067268 - 1067255 - R 71 -3.7 -4.87803 | TATCCTGAAATAAAA GCAGC CAAT GCAGC GCGTAATATGTCTCT APH_1009 1068230 - 1068084 - | hypothetical protein APH_1010 1069169 - 1068507 - | phospholipase/carboxylesterase family protein TERM 452 1070119 - 1070107 - R 70 -5.5 -4.38129 | ATACAACCACTAAAA CACCG TAC CAGTG AGAAGTTACAAAAAA APH_1011 1070194 - 1070090 - | hypothetical protein APH_1012 1070905 - 1070312 - | putative polypeptide deformylase pyrD 1071160 - 1072212 + | dihydroorotate dehydrogenase 2 APH_1014 1072221 - 1073012 + | pantothenate kinase APH_1015 1073779 - 1073279 - | Na+/H+ ion antiporter family protein bioF 1074237 - 1075373 + | 8-amino-7-oxononanoate synthase APH_1017 1076720 - 1075449 - | MSP2 family outer membrane protein TERM 453 1076044 - 1076064 + g 74 -6.9 -4.27441 | TCCTGACATGCAGCT CTCACATGG GGA TTATGTGAG TTTGTTCCTCCTACT TERM 454 1077481 - 1077491 + r 73 -6.8 -4.25104 | opp_overlap 1077481 TTTACTGATAGTAGA GCCA AAA TGGC TTTTGCTAACGGAAG APH_1019 1079253 - 1079128 - | hypothetical protein TERM 455 1079520 - 1079540 + H 72 -8.3 -3.53444 | TTGTGTAGAGTATCT GTGTTGAGT GGG ACTCAGCGC TTTACGGGGCCGTAG APH_1021 1079655 - 1080098 + | hypothetical protein rnhB 1081522 - 1082154 + | ribonuclease HII rpoC 1086925 - 1082696 - | DNA-directed RNA polymerase, beta' subunit TERM 456 1084307 - 1084297 - G 71 -8.2 -3.45945 | opp_overlap 1084296, overlap 1084298 TGGACTCACAAGTAA GCGG TGA CCGC ACCTTCACCGCATCT rpoB 1091089 - 1086938 - | DNA-directed RNA polymerase subunit beta TERM 457 1087381 - 1087360 - G 72 -7.3 -3.96892 | opp_overlap 1087375 AACGCCCATCATAAA GATCCACCT GCCC AGACGGATC AACATCCGCTAATTC rplL 1091533 - 1091129 - | 50S ribosomal protein L7/L12 rplJ 1092180 - 1091698 - | 50S ribosomal protein L10 rplA 1092862 - 1092212 - | 50S ribosomal protein L1 rplK 1093323 - 1092877 - | 50S ribosomal protein L11 nusG 1093888 - 1093328 - | transcription termination/antitermination factor NusG secE 1094078 - 1093878 - | preprotein translocase subunit SecE tuf-2 1095378 - 1094197 - | elongation factor Tu fusA 1097459 - 1095387 - | elongation factor G rpsG 1097977 - 1097495 - | 30S ribosomal protein S7 rpsL 1098369 - 1097995 - | 30S ribosomal protein S12 TERM 458 1098968 - 1098993 + H 74 -4.8 -4.74285 | overlap 1098963 TACATTCCTTCCAAT GCTTATAAAG CCTTGC CTTTCTAAGC TTTTCTCTTCTGAAT TERM 459 1099029 - 1099039 + H 72 -4.6 -4.7458 | TATGCTCTAAGAACT GCTC TGT GGGC TTTATTTGTTATCCT APH_1036 1099468 - 1101099 + | metallo-beta-lactamase family protein tolB 1101089 - 1102396 + | translocation protein TolB APH_1038 1103158 - 1102973 - | hypothetical protein APH_1039 1103347 - 1103442 + | hypothetical protein TERM 460 1104207 - 1104192 - T 72 -3.2 -5.0917 | CTATCAAAAAATAAA CACCGT AAAT ACAGCG TCATATACTAAGGCT APH_1041 1104966 - 1104862 - | hypothetical protein APH_1042 1105431 - 1106135 + | hypothetical protein APH_1043 1106232 - 1107761 + | HlyD family type I secretion membrane fusion protein APH_1044 1108516 - 1108406 - | hypothetical protein TERM 461 1108801 - 1108817 + r 79 -8.7 -4.12603 | GTATCCACGGGTTTA CGTGCAG TAA CTGTACG TTCTTCTTTAGTACC APH_1045 1111004 - 1109370 - | ABC transporter, permease protein TERM 462 1109620 - 1109610 - G 78 -5.4 -5.00412 | opp_overlap 1109610, overlap 1109619 AAATACAAGCAAAAA TCCT ACA AGGA TGCTCTTTTTCAGCA TERM 463 1109703 - 1109713 + g 73 -5.4 -4.63932 | opp_overlap 1109703 GGCAGACCAATCAAC TTCC CGA GGAA TTTTATTGAAACCTG TERM 464 1110182 - 1110169 - G 71 -6.7 -4.11692 | opp_overlap 1110168 CACTTACTGTTAAAA TGCCA TCTA TGGCA GTAATTAGTATTCAT APH_1046 1111329 - 1111207 - | hypothetical protein APH_1047 1111739 - 1111846 + | hypothetical protein fabK 1112126 - 1113142 + | enoyl-(acyl-carrier-protein) reductase II msp5 1113306 - 1113935 + | major surface protein 5 APH_1050 1113986 - 1115005 + | putative phosphate ABC transporter, periplasmic phosphate-binding protein rpsU 1115117 - 1115392 + | 30S ribosomal protein S21 sucC 1115485 - 1116651 + | succinyl-CoA synthetase, beta subunit sucD 1116660 - 1117547 + | succinyl-CoA synthetase, alpha subunit APH_1054 1118219 - 1118314 + | hypothetical protein APH_1055 1118368 - 1118460 + | hypothetical protein APH_1056 1119088 - 1119897 + | putative cell cycle protein MesJ APH_1057 1120085 - 1120213 + | hypothetical protein alaS 1123008 - 1120378 - | alanyl-tRNA synthetase TERM 465 1121230 - 1121213 - G 73 -5.5 -4.70319 | TGACTAAAATCAAAA CGTAGCT TGTC AGCTGCG ACTAAAGACCCTTTC TERM 466 1122879 - 1122869 - G 71 -6.8 -4.08064 | overlap 1122856 AACCTCTGCTTAAAA GGCA CCA TGCC AGCATTAGTGAATAA TERM 467 1123330 - 1123342 + G 70 -5.5 -4.46926 | opp_overlap 1123322 1123332 GTTCAAAGTGCTACA GAGCG CCA TGCTC TTTTCTACTGCACTG pstC 1123289 - 1124212 + | phosphate ABC transporter, permease protein PstC APH_1061 1124212 - 1125024 + | glutamine synthetase domain-containing protein APH_1062 1125827 - 1125036 - | metallo-beta-lactamase family protein TERM 468 1125963 - 1125977 + r 75 -5.8 -4.7173 | opp_overlap 1125963 ACATTTGTTCGATAA TTTTCT CCT AGAAAA TTTTTAAGTATCATA TERM 469 1126021 - 1125995 - R 72 -10.3 -2.68015 | overlap 1125994 1125997 TTTAAGTATCATAAC CACTATTAGTG CTAAT CACTAACAGTG TCCACAGCCTCAGTG TERM 470 1126379 - 1126352 - R 82 -11.6 -3.1978 | opp_overlap 1126359, overlap 1126350 1126359 ATGGGGATATTAAGA GTCTAAATAATA AACC TATTATTTAGAC CAAGGGTATAGGGGA TERM 471 1128089 - 1128070 - R 79 -5.7 -4.86902 | CAAACCAGAACAAAA CGACAAC GCCAAA GCTGTCG CTAAAGACCTAACAA APH_1066 1129488 - 1129003 - | hypothetical protein APH_1067 1130108 - 1129509 - | hypothetical protein APH_1068 1131564 - 1130125 - | hypothetical protein TERM 472 1131294 - 1131259 - G 76 -2.5 -5.38249 | ATTAACTACAAAAAA GGAAGTCTTGAAGCC CTTTAC GTCTACAAAACCCCC TTGCCTATTCCTCCA APH_1069 1133904 - 1131652 - | hypothetical protein TERM 473 1132328 - 1132343 + g 88 -6.8 -5.1675 | opp_overlap 1132328 1132329, overlap 1132329 CCTATAGGCACCAAA TCACGC ACTT GCGTGG TTTTTTCCTCAATAC TERM 474 1132329 - 1132342 + g 70 -8.1 -3.69327 | opp_overlap 1132329 1132328, overlap 1132328 CTATAGGCACCAAAT CACGC ACTT GCGTG GTTTTTTCCTCAATA lpdA-3 1134299 - 1135714 + | dihydrolipoamide dehydrogenase rho 1137128 - 1135797 - | transcription termination factor Rho TERM 475 1137391 - 1137381 - R 76 -4.6 -5.12785 | overlap 1137382 TAAGGAAAAAATAAA CCCC CCA AGGG AAACCCCGGACGAAC APH_1072 1137641 - 1137423 - | hypothetical protein TERM 476 1138461 - 1138482 + G 78 -10.1 -3.48276 | overlap 1138462 1138466 CTCAGGGGGTAACCT CGCCCTAGC AGCT GCTAGGGCA TTGTGTGCAGCGCAA TERM 477 1138462 - 1138481 + G 93 -13.6 -2.68823 | overlap 1138461 1138466 TCAGGGGGTAACCTC GCCCTAGC AGCT GCTAGGGC ATTGTGTGCAGCGCA hslV 1138045 - 1138614 + | ATP-dependent protease peptidase subunit hslU 1138781 - 1140094 + | ATP-dependent protease ATP-binding subunit ubiE 1140100 - 1140795 + | ubiquinone/menaquinone biosynthesis methlytransferase UbiE APH_1076 1141236 - 1141006 - | P44 outer membrane protein, C-terminal fragment TERM 478 1144168 - 1144155 - g 70 -8.1 -3.6215 | TTAATTGATGGTAAA GCTCC AACC GGAGC GGAAGTTACGTGGTT metG 1143723 - 1145264 + | methionyl-tRNA synthetase TERM 479 1145755 - 1145767 + T 84 -6.9 -4.9181 | TGCGTCCTGCGTGTA GGGTG TCG CGCCC TTTTTGGTCTTATAT TERM 480 1146846 - 1146830 - T 75 -9.5 -3.41701 | overlap 1146828 1146827 GTGACGAAAAAACCA TAGTAGC TGG GCTACTA GCTAAAACTATTGAA APH_1083 1149040 - 1148873 - | hypothetical protein TERM 481 1149426 - 1149447 + G 75 -10.3 -2.80344 | overlap 1149425 GCTGATCGTTGGTTT CTTGACATT TAGT AATGTCAAG CTTATTAGGTACGAG APH_1084 1149103 - 1149891 + | cytochrome c oxidase, subunit II TERM 482 1149898 - 1149920 + F 100 -10.6 -5.42198 | overlap 1149889 1149899 GAGTCTTGAGTGCGT TGCGATCACT TAT AGTGGTCGCG TTTTGTTTTTTCCGA TERM 483 1149899 - 1149919 + F 91 -11.9 -3.83692 | overlap 1149889 1149898 AGTCTTGAGTGCGTT GCGATCACT TAT AGTGGTCGC GTTTTGTTTTTTCCG TERM 484 1151121 - 1151137 + G 74 -9.4 -3.31799 | overlap 1151119 1151132 TACGTGATGTCTATA GCAGCG CTGTT CGCTGC TTATGCAGGGTTCTA ctaD 1149954 - 1151510 + | cytochrome c oxidase, subunit I cyoE 1151523 - 1152413 + | protoheme IX farnesyltransferase APH_1087 1153154 - 1152453 - | putative competence lipoprotein ComL TERM 485 1153579 - 1153592 + G 71 -4.5 -4.62471 | opp_overlap 1153579 CGATGCTCTAAGCGA CGAGG GAAT CTTCG TTTTTGGCCCTTCCA purD 1153328 - 1154584 + | phosphoribosylamine--glycine ligase APH_1089 1154682 - 1154789 + | hypothetical protein yajC 1154824 - 1155198 + | preprotein translocase, YajC subunit APH_1091 1155501 - 1155596 + | hypothetical protein APH_1092 1155650 - 1155742 + | hypothetical protein APH_1093 1156370 - 1157179 + | putative cell cycle protein MesJ APH_1094 1157367 - 1157495 + | hypothetical protein APH_1095 1157464 - 1157691 + | peptidase domain-containing protein APH_1096 1157944 - 1157660 - | alanyl-tRNA synthetase domain-containing protein TERM 486 1158177 - 1158159 - R 70 -8.2 -3.62644 | overlap 1158160 CTCATAAGCACACAA CTCTTCTC TTT GAGAAGAA CTTAGGAAAATTAAA TERM 487 1158176 - 1158160 - R 71 -9.5 -2.77104 | overlap 1158159 TCATAAGCACACAAC TCTTCTC TTT GAGAAGA ACTTAGGAAAATTAA dnaN 1159339 - 1158212 - | DNA polymerase III, beta subunit APH_1098 1160067 - 1159453 - | 3''-5'' exonuclease family protein APH_1099 1160965 - 1160135 - | DNA-binding response regulator APH_1100 1161907 - 1161269 - | DNA-binding protein ppa 1163036 - 1162500 - | inorganic pyrophosphatase TERM 488 1162880 - 1162867 - G 71 -4.5 -4.63218 | GTGTTGGGAATAAAA CCGTA GTTA CACGG ATAGTACATCGCAGT TERM 489 1162920 - 1162905 - G 71 -4.7 -4.58395 | CGCAGTCGGCAAAAA CCTGT CAACCC ACAGG GCACCGTTCTTCTCA TERM 490 1163179 - 1163164 - R 78 -7.6 -4.35524 | opp_overlap 1163163 1163166 TTTGCAAACGTAAAA CATCAC AAAC GTGATG CTATAATCATACTAC APH_1102 1164019 - 1163864 - | hypothetical protein APH_1103 1164377 - 1164021 - | hypothetical protein APH_1104 1164416 - 1164520 + | hypothetical protein APH_1105 1165277 - 1165375 + | hypothetical protein TERM 491 1165502 - 1165518 + T 76 -2.1 -5.37593 | opp_overlap 1165494 1165502 1165505 1165514, overlap 1165504 ATATATACAAGGTAA GCACCTG GAA CAGGCAC TTTTTTGATTTAAAA APH_1106 1165955 - 1165842 - | hypothetical protein rpsI 1166409 - 1165960 - | 30S ribosomal protein S9 rplM 1166872 - 1166396 - | 50S ribosomal protein L13 TERM 492 1167011 - 1166991 - g 73 -2.5 -5.10497 | opp_overlap 1167002, overlap 1166993 1166995 1166998 AATTTACCCAAAAAA TATAGCACA AGT TGCGCTGCA ATTTGGAGATTCTAC APH_1109 1166971 - 1167066 + | hypothetical protein APH_1110 1167063 - 1168337 + | outer membrane efflux protein TERM 493 1168505 - 1168482 - T 90 -12.5 -3.61902 | opp_overlap 1168482 GTTCACTAGACATAA GTCGCCACA GAGTGG TGTGGCGAC TTCGTGACACAGAAT TERM 494 1168482 - 1168505 + T 85 -12.5 -3.14211 | opp_overlap 1168482 GTTCACTAGACATAA GTCGCCACA GAGTGG TGTGGCGAC TTCGTGACACAGAAT TERM 495 1169929 - 1169915 - T 90 -8.6 -4.87626 | TTTGAACAGTAAAAA CGTATG GCG CATACG AAGGGTTTTTCTATG TERM 496 1170040 - 1170028 - T 71 -4.9 -4.62783 | TATGTACTCCAAAAA CAAAA GCG TTTTG ATGTTAAGAATACTA APH_1111 1171095 - 1170067 - | ATP-binding Mrp/Nbp35 family protein prsA 1171211 - 1172179 + | ribose-phosphate pyrophosphokinase gatC 1172176 - 1172496 + | glutamyl-tRNA(Gln) amidotransferase, C subunit p44-7 1173721 - 1174788 + | P44-7 outer membrane protein APH_1116 1175540 - 1175364 - | hypothetical protein TERM 497 1176279 - 1176297 + r 74 -4.6 -4.89852 | CGCTATTTGAATATT TTCTGCTA CTG TACCAGAA TTTTTGTCCATATCA acnA 1179602 - 1176981 - | aconitate hydratase TERM 498 1177453 - 1177467 + g 76 -2.8 -5.29782 | AATCCACCCTCTACA CCAGAT AAC ATCTCG TTTTTTATACGTATA purK 1182851 - 1181775 - | phosphoribosylaminoimidazole carboxylase, ATPase subunit TERM 499 1182498 - 1182517 + g 70 -7.2 -3.79874 | AATACCTAGTGACTG TATGTGAG TTTT CTCACGTA TTCTGTTCTGTGCAA apaG 1182984 - 1183391 + | ApaG TERM 500 1185581 - 1185560 - f 76 -2.3 -5.4505 | gap 1, overlap 1185561 1185563 CCTCTGAAGAAAAAA CCATAGTAGC AGG GCTACTA-GC TAAAACTATTGAAGG TERM 501 1185579 - 1185563 - f 77 -9.5 -3.5087 | overlap 1185561 1185560 CTGAAGAAAAAACCA TAGTAGC AGG GCTACTA GCTAAAACTATTGAA APH_1124 1185766 - 1185936 + | P44 outer membrane protein, C-terminal fragment APH_1125 1186140 - 1186427 + | P44 outer membrane protein, C-terminal fragment TERM 502 1186817 - 1186807 - g 71 -8.2 -3.42583 | overlap 1186798 TGAAGAGACGGATAA CGCC AGT GGCG CCAATGCGAGCGAAG TERM 503 1187006 - 1187019 + G 74 -4.5 -4.78661 | GAGAGCTACGTAAGG GTAGC CAGG GCTGC TTTTGATTTTTGCGT APH_1126 1186772 - 1187038 + | hypothetical protein APH_1127 1190592 - 1187239 - | hypothetical protein TERM 504 1187770 - 1187748 - G 78 -9.2 -3.61398 | TGCCTCCCCCAACAA CTCTCGCTAC CTC ATAGCAAGAG TGAGAATTTGAGCCC TERM 505 1190224 - 1190212 - G 79 -7.7 -4.386 | CAAGGGTTTAGAAAA GCATC CAA GATGC GTAGTACATTTTCTA virB4-2 1194178 - 1191845 - | type IV secretion system protein VirB4 APH_1130 1194757 - 1194386 - | hypothetical protein APH_1131 1195456 - 1195097 - | hypothetical protein TERM 506 1195431 - 1195415 - G 71 -2.1 -5.15167 | opp_overlap 1195418 1195429, overlap 1195418 TAGTAGTAATAAAAA CATGCCC ACT GTGCTTG TAAAAAATCTTACAA APH_1132 1195850 - 1195476 - | hypothetical protein TERM 507 1196638 - 1196680 + r 95 -12.1 -4.30014 | TGCAATTTATTTTTA CACGCCGTGAGTAGCAA TTTTTAATC TTGCAACTTGCGGCGTG TTTTGCGTTCGTGAA APH_1133 1197075 - 1196716 - | hypothetical protein TERM 508 1197678 - 1197688 + r 93 -5.4 -5.58454 | overlap 1197665 TGTGCTAGGGACCCT GACA GTG TGTC TTTTTTTAATGTAAG TERM 509 1197899 - 1197857 - R 83 -12.1 -3.21099 | opp_overlap 1197857 TGCTTGCACTATTAA CACGCCGCGAGTAGTAA GACTAAAAG TTGCTACTTGCGGCGTG TTTTGTGTTAGTTAA TERM 510 1197857 - 1197899 + r 100 -16.5 -4.73864 | opp_overlap 1197857 TGCTTGCACTATTAA CACGCCGCGAGTAGTAA GACTAAAAG TTGCTACTTGCGGCGTG TTTTGTGTTAGTTAA APH_1134 1198297 - 1197935 - | hypothetical protein APH_1135 1198948 - 1199055 + | hypothetical protein TERM 511 1199425 - 1199392 - T 81 -11.2 -3.02186 | overlap 1199389 ACAGTCTACAAAGCA TGCACTAGTTGTTG TTAACT CAATAACTAGTGCA CAAAGCCTCGCGTCC APH_1136 1199893 - 1199459 - | hypothetical protein TERM 512 1199840 - 1199824 - G 71 -4.5 -4.5787 | TTATCAAAAAAAATA CTTTCTT ATT AAAAAAG GTTCGCGCAAAACTT APH_1137 1200336 - 1200025 - | hypothetical protein APH_1138 1200467 - 1200333 - | hypothetical protein TERM 513 1201409 - 1201397 - R 71 -6.3 -4.19324 | AAATGACAGAAAGAA CTTCT CAA AGAAG ATACTACTACAGTGT APH_1139 1201678 - 1201559 - | hypothetical protein APH_1140 1201993 - 1201811 - | hypothetical protein APH_1141 1202060 - 1201962 - | hypothetical protein TERM 514 1202167 - 1202157 - R 73 -5.4 -4.55721 | AAACGCGATACAAAA TGCT ATT AGCA GACGCTCGTATCACA APH_1142 1202339 - 1202220 - | hypothetical protein TERM 515 1202446 - 1202417 - R 70 -7.9 -3.67 | gap 1, opp_overlap 1202417, overlap 1202415 CCAAGCCTTAAAATA CCCCAGATC-TGTA CTT CACAGGATCAGGGG TTATAAACAACAGCT APH_1143 1202592 - 1202464 - | hypothetical protein APH_1144 1203044 - 1202673 - | hypothetical protein APH_1145 1203486 - 1203100 - | hypothetical protein hflK 1204211 - 1205317 + | HflK protein hflC 1205314 - 1206189 + | HflC protein APH_1148 1206192 - 1207664 + | protease DO family protein TERM 516 1207682 - 1207718 + F 79 -9.5 -3.74454 | gap 1, opp_overlap 1207640, overlap 1207680 1207686 1207688 GCTTTTGTATTACAG CTAGCATGCCCTCGGG TTATTT TCCGGGGGCATG-TGG TATTGTTATTTTTCC TERM 517 1207686 - 1207715 + F 93 -13.6 -2.9294 | opp_overlap 1207640, overlap 1207682 1207680 1207688 TTGTATTACAGCTAG CATGCCCTCGGG TTATTT TCCGGGGGCATG TGGTATTGTTATTTT TERM 518 1207688 - 1207713 + F 75 -10.4 -2.99097 | overlap 1207686 1207682 1207680 GTATTACAGCTAGCA TGCCCTCGGG TTATTT TCCGGGGGCA TGTGGTATTGTTATT rnc 1208958 - 1209668 + | ribonuclease III TERM 519 1209682 - 1209659 - f 73 -2.4 -5.18371 | overlap 1209660 GGTTACAAAACAAAA CGATCCATAG TACT CTATGTACCA AGTACCCAAATTCAC ctaG 1209710 - 1210261 + | cytochrome C oxidase assembly protein APH_1151 1210876 - 1210283 - | hypothetical protein TERM 520 1211649 - 1211624 - R 90 -3.3 -5.90981 | gap 1, opp_overlap 1211627, overlap 1211627 GCATAGTAAAAAAAA CAACCTA-GCCT TCG AAGCTTAGGTAG CTTACGAGCCCACAA TERM 521 1211646 - 1211627 - R 70 -3.6 -4.99643 | gap 1, opp_overlap 1211627, overlap 1211624 TAGTAAAAAAAACAA CCTA-GCCT TCG AAGCTTAGG TAGCTTACGAGCCCA APH_1153 1218699 - 1213276 - | hypothetical protein TERM 522 1213327 - 1213302 - G 90 -11.3 -3.61398 | opp_overlap 1213300 1213302 GCTTTGTCTTAACAA CCTTTTTAAGG TGTT CCTCAAAAAGG ACAGTATTAGATTCT TERM 523 1216186 - 1216197 + g 88 -3 -5.8187 | TTGCTCTGTAGATAT TTCT TGAA AGAA TTTTTTTGTTGCATC TERM 524 1218950 - 1218936 - R 74 -4.2 -5.11063 | opp_overlap 1218936 ATCACGCAATAAAAA TCTTGG GCT CCGAGA TATAGTCTCCACGCT TERM 525 1219000 - 1219010 + r 89 -5.4 -5.4505 | ACTAATATTCAAAGC CCAT TCC ATGG TTTTTTCTTCAGGGG p44-53 1220803 - 1219544 - | P44-53 outer membrane protein TERM 526 1219931 - 1219949 + g 71 -8.8 -3.38604 | overlap 1219943 TTTGGCGTTGTCGTT GGTGACAG CTG CTGGCACC TTGCTACTTTTCGTC APH_1156 1221708 - 1221577 - | hypothetical protein APH_1157 1222693 - 1221815 - | hypothetical protein TERM 527 1222477 - 1222424 - G 75 -10.5 -2.84878 | gap 1, opp_overlap 1222428, overlap 1222423 GTCTGCAATGCAAAT CTTAGCGCTATTGTGCTCTAGTGCTG CTA CAACAGCAGAGTACAATA-CGCTGAG TAAAAACATTACCGA TERM 528 1222828 - 1222881 + r 76 -8.9 -3.68265 | opp_overlap 1222826 1222829 1222847, overlap 1222829 1222831 1222847 ACACAAGCACACACT AGGTTGGCCAGCTACGAAACCCG GCTTTCTG CGGGTTTCATAGCTGCACAATCA TTTGGAATTAGATTT TERM 529 1222880 - 1222829 - R 83 -12.4 -2.73781 | opp_overlap 1222828 1222829 1222831 1222847, overlap 1222826 1222847 CACAAGCACACACTA GGTTGGCCAGCTACGAAACCCG GCTTTCTG CGGGTTTCATAGCTGCACAATC ATTTGGAATTAGATT TERM 530 1222829 - 1222880 + r 83 -12.4 -2.80236 | opp_overlap 1222829 1222826 1222847, overlap 1222828 1222831 1222847 CACAAGCACACACTA GGTTGGCCAGCTACGAAACCCG GCTTTCTG CGGGTTTCATAGCTGCACAATC ATTTGGAATTAGATT TERM 531 1222831 - 1222878 + r 81 -11.4 -2.94412 | opp_overlap 1222829 1222826 1222847, overlap 1222829 1222828 1222847 CAAGCACACACTAGG TTGGCCAGCTACGAAACCCG GCTTTCTG CGGGTTTCATAGCTGCACAA TCATTTGGAATTAGA APH_1158 1224230 - 1222839 - | M16 family peptidase APH_1159 1225773 - 1224232 - | M16 family peptidase TERM 532 1224979 - 1224991 + g 80 -6.3 -4.88067 | GTGGGGAGGCTCGAT GTTTG CTG CAAAC TTTTTCTCAATACGT lspA 1226279 - 1225809 - | signal peptidase II ribF 1227329 - 1226373 - | riboflavin biosynthesis protein RibF grxC 1227356 - 1227598 + | glutaredoxin 3 TERM 533 1228524 - 1228506 - T 70 -8.8 -3.38604 | overlap 1228500 GACGAAAAGTAGCAA GGTGCCAG CAG CTGTCACC AACGACAACGCCAAA ftsA-1 1230076 - 1228892 - | cell division protein FtsA recJ 1231959 - 1230202 - | single-stranded-DNA-specific exonuclease RecJ APH_1166 1233568 - 1232135 - | isocitrate dehydrogenase APH_1167 1234484 - 1233846 - | hypothetical protein TERM 534 1233965 - 1233977 + g 72 -7.7 -3.86524 | AGTGCTCGAATTGGT GCTGA AAA TCAGC TTTATCAGCAAGTAT TERM 535 1234875 - 1234862 - R 79 -3.1 -5.50774 | CACAAGAAACAAAAA CATGA TGGG TCACG GTGCCTGCCTAAACC p44-36 1236532 - 1235432 - | P44-36 outer membrane protein TERM 536 1236580 - 1236550 - R 100 -22.8 -3.04501 | overlap 1236553 ACTAACTCCCTAATA GAAGCGGGGTAAGT TTG ACTTACCCCGCTTC CAACAAACCACCTTA TERM 537 1236577 - 1236553 - R 100 -18.7 -3.66556 | overlap 1236550 AACTCCCTAATAGAA GCGGGGTAAGT TTG ACTTACCCCGC TTCCAACAAACCACC APH_1169 1237543 - 1236593 - | P44-19 outer membrane protein, silent APH_1170 1239502 - 1237808 - | pentapeptide repeat-containing protein APH_1172 1240820 - 1240584 - | P44 outer membrane protein, C-terminal fragment APH_1171 1239986 - 1240663 + | hypothetical protein pyrE 1242299 - 1242913 + | orotate phosphoribosyltransferase thiF 1242991 - 1243779 + | adenylyltransferase thiF APH_1175 1244086 - 1244199 + | glutaredoxin 3, truncation TERM 538 1245082 - 1245068 - g 78 -5.6 -4.91109 | TGCTGAGGATAAAAA CTGGCC GAC GGGCAG GGCAAAATCGAACAC p44-2 1244325 - 1245404 + | P44-2 outer membrane protein TERM 539 1246146 - 1246124 - T 77 -6.2 -4.51196 | overlap 1246138 TGCAAACTCACAAAA TAGCAACGCC AAA GCCGTAGCTA CAGACCTAGTAGCGC secA 1249425 - 1246804 - | preprotein translocase subunit SecA ftsH 1251434 - 1249599 - | ATP-dependent metalloprotease FtsH TERM 540 1250768 - 1250758 - G 74 -6.8 -4.39828 | opp_overlap 1250758 AACATCTCCACAAAA TCGG AAC CCGA TATGCTAAAAAACGG tilS 1252790 - 1251447 - | tRNA(Ile)-lysidine synthetase APH_1182 1253123 - 1254583 + | TrkH family potassium uptake protein ftsA-2 1254695 - 1255915 + | cell division protein FtsA TERM 541 1256205 - 1256221 + F 75 -9.5 -3.41701 | overlap 1256204 1256203 TTCAATAGTTTTAGC TAGTAGC CCT GCTACTA TGGTTTTTTCGTCAC APH_1187 1258529 - 1258651 + | hypothetical protein APH_1188 1258841 - 1258716 - | hypothetical protein APH_1189 1259986 - 1259495 - | putative ATP synthase F0, B subunit APH_1190 1260486 - 1259983 - | putative ATP synthase F0, B' subunit atpE 1260717 - 1260493 - | F0F1 ATP synthase subunit C atpB 1261650 - 1260922 - | F0F1 ATP synthase subunit A APH_1193 1261898 - 1263151 + | AraM domain-containing protein p44-1 1265383 - 1264142 - | P44-1 outer membrane protein APH_1196 1265295 - 1265417 + | hypothetical protein APH_1197 1265615 - 1266127 + | hexapeptide transferase family protein sucB 1266220 - 1267440 + | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase map 1267450 - 1268244 + | methionine aminopeptidase APH_1200 1268369 - 1269217 + | HemK family modification methylase APH_1201 1269499 - 1269398 - | hypothetical protein TERM 542 1269677 - 1269698 + H 76 -2.3 -5.4505 | gap 1, overlap 1269678 1269679 CCTTCAATAGTTTTA GC-TAGTAGC CCA GCTACTATGG TTTTTTCTTCAGGGG TERM 543 1269679 - 1269695 + H 77 -9.5 -3.5087 | overlap 1269678 1269677 TTCAATAGTTTTAGC TAGTAGC CCA GCTACTA TGGTTTTTTCTTCAG APH_1204 1271005 - 1271373 + | cytochrome c-type biogenesis protein, truncation APH_1205 1273019 - 1271757 - | putative cytochrome c oxidase, subunit I pgsA 1273604 - 1274149 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase purH 1276408 - 1274876 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase fabZ 1276863 - 1276426 - | (3R)-hydroxymyristoyl-ACP dehydratase APH_1209 1277437 - 1276880 - | hypothetical protein APH_1210 1279758 - 1277440 - | OMP85 family outer membrane protein APH_1211 1280852 - 1279764 - | putative membrane-associated zinc metalloprotease TERM 544 1280550 - 1280522 - G 72 -9.7 -2.75081 | opp_overlap 1280522 1280525, overlap 1280525 1280529 GACCTGCAAAAGCTA TAAGAAACCTCTG CCA CAAAGGCTTCTCA TTTAAGGCACAAAGC TERM 545 1280547 - 1280525 - G 76 -9.2 -3.52113 | opp_overlap 1280525 1280522, overlap 1280522 1280529 CTGCAAAAGCTATAA GAAACCTCTG CCA CAAAGGCTTC TCATTTAAGGCACAA TERM 546 1280543 - 1280529 - G 72 -6.4 -4.38114 | opp_overlap 1280525 1280522, overlap 1280525 1280522 AAAAGCTATAAGAAA CCTCTG CCA CAAAGG CTTCTCATTTAAGGC APH_1212 1280971 - 1281237 + | TPR repeat-containing protein APH_1213 1281281 - 1282489 + | thiol:disulfide interchange protein, truncation APH_1214 1283646 - 1282486 - | D-alanyl-D-alanine carboxypeptidase family protein p44-14 1285256 - 1283955 - | P44-14 outer membrane protein TERM 547 1284504 - 1284519 + g 74 -4.6 -4.8143 | GCTCCCACTGTGTAT CTTGCC CGTA GGCCAG TTTTTACCTTCTTCC APH_1216 1285381 - 1286610 + | polyA polymerase/tRNA nucleotidyltransferase family protein ndk 1287067 - 1286645 - | nucleoside diphosphate kinase APH_1218 1287298 - 1287849 + | DNA-binding protein omp-1X 1288189 - 1289109 + | Omp-1X omp-1N 1289345 - 1290169 + | Omp-1N p44-18ES 1290383 - 1291678 + | P44-18ES, P44 outer membrane protein expression locus with P44-18 TERM 548 1291696 - 1291713 + F 73 -5.5 -4.64076 | gap 1, opp_overlap 1291696 1291694, overlap 1291696 TTGCTTATCTAAAGA GGGG-GCT AAG GGCTCCCC TTTTCTACTTTAATT APH_1222 1291821 - 1291964 + | hypothetical protein APH_1223 1291980 - 1292234 + | recA protein, truncation valS 1294641 - 1292221 - | valyl-tRNA synthetase APH_1225 1295256 - 1294960 - | hypothetical protein ftsY 1297590 - 1296673 - | signal recognition particle-docking protein FtsY bioD 1297664 - 1298341 + | dethiobiotin synthetase TERM 549 1299782 - 1299768 - g 78 -5.6 -4.91109 | TGCTGAGGATAAAAA CTGGCC GAC GGGCAG GGCAAAATCGAACAC p44-2b 1299025 - 1300302 + | P44-2b outer membrane protein gshA 1301913 - 1300687 - | glutamate--cysteine ligase gltA 1303577 - 1302342 - | citrate synthase I guaA 1305200 - 1303611 - | bifunctional GMP synthase/glutamine amidotransferase protein APH_1234 1305254 - 1305361 + | hypothetical protein APH_1235 1305650 - 1306054 + | hypothetical protein TERM 550 1306106 - 1306070 - gT 73 -10.1 -2.79796 | overlap 1306089 GTTTAGCCCAGGAGA CTGCTGCAGTTCAAGCA CAG CGCCTAACCGGCAGCAG GTGCTGCATGCACAG APH_1236 1305985 - 1306128 + | hypothetical protein APH_1237 1306227 - 1306093 - | hypothetical protein TERM 551 1306178 - 1306144 - G 77 -10.9 -2.87211 | opp_overlap 1306144 ATGTTGTTTGATAGA TGCCTGGAGCAGAT-CT AGT AGCATC-GCCCCAGGCA TCTCTCCCATTCCAA TERM 552 1308035 - 1308065 + H 100 -22.8 -3.04501 | overlap 1308038 TAAGGTGGTTTGTTG GAAGCGGGGTAAGT CAA ACTTACCCCGCTTC TATTAGGGAGTTAGT TERM 553 1308038 - 1308062 + H 100 -18.7 -3.66556 | overlap 1308035 GGTGGTTTGTTGGAA GCGGGGTAAGT CAA ACTTACCCCGC TTCTATTAGGGAGTT p44-15b 1308083 - 1309177 + | P44-15b outer membrane protein msp4 1310713 - 1309865 - | major surface protein 4 TERM 554 1313492 - 1313506 + r 73 -8.6 -3.78778 | GTATATCTCATGGAT GACTCA TAG TGAGTC TTCTTGCTATGCTAG hemA 1314918 - 1313674 - | 5-aminolevulinate synthase TERM 555 1314548 - 1314528 - G 71 -3.3 -5.0538 | overlap 1314505 TCTCATCTGAAAAAA CCACAAC ATCCGGA ATTGTGG CCAAAATAGTGCTTA tyrS 1316446 - 1315208 - | tyrosyl-tRNA synthetase TERM 556 1316168 - 1316178 + g 74 -6.8 -4.38322 | overlap 1316165 TATGTTATCTTCGGA GAGC ATG GCTC TTGTTTTCTCCTTCC glnA 1316738 - 1318156 + | glutamine synthetase, type I ispB 1318413 - 1319363 + | octaprenyl-diphosphate synthase TERM 557 1319440 - 1319453 + T 73 -5.9 -4.49311 | GTATTAGCTCGGGTA CGCCC TTTA GGGTG TTTTATCGTGATACT p44-12 1322068 - 1320893 - | P44-12 outer membrane protein APH_1251 1322951 - 1322781 - | hypothetical protein holA 1323024 - 1324040 + | DNA polymerase III, delta subunit APH_1254 1325082 - 1325204 + | hypothetical protein TERM 558 1325651 - 1325641 - f 70 -5.4 -4.37092 | ACTTTGTCGAGAAAA CTCT AAA AGAG GATGGAAACGGGAAT TERM 559 1326210 - 1326240 + F 100 -22.8 -3.04501 | overlap 1326213 TAAGGTGGTTTGTTG GAAGCGGGGTAAGT CAA ACTTACCCCGCTTC TATTAGGGAGTTAGT TERM 560 1326213 - 1326237 + F 100 -18.7 -3.66556 | overlap 1326210 GGTGGTTTGTTGGAA GCGGGGTAAGT CAA ACTTACCCCGC TTCTATTAGGGAGTT p44-23 1326258 - 1327445 + | P44-23 outer membrane protein TERM 561 1327834 - 1327822 - g 82 -7.7 -4.4715 | GTGTAATGTACAAAA TCCTC AAA GAGGA AGGTAGCAAAAATGT APH_1257 1327644 - 1328906 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 562 1329052 - 1329092 + F 71 -5.3 -4.6468 | overlap 1329058 1329062 CTCTGCCCTATAATT GGAGAGTGAGCACTCGGCG CAG CGCTGGGTGTACATTTGTC TTTTGTATGATTTGC TERM 563 1329058 - 1329086 + F 91 -9.5 -4.53648 | overlap 1329052 1329062 CCTATAATTGGAGAG TGAGCACTCGGCG CAG CGCTGGGTGTACA TTTGTCTTTTGTATG TERM 564 1329062 - 1329082 + F 77 -11.1 -2.80021 | overlap 1329058 1329052 TAATTGGAGAGTGAG CACTCGGCG CAG CGCTGGGTG TACATTTGTCTTTTG fba 1329099 - 1330019 + | fructose-bisphosphate aldolase APH_1260 1330221 - 1330319 + | hypothetical protein APH_1262 1331957 - 1331826 - | hypothetical protein infC 1332552 - 1332034 - | translation initiation factor IF-3 TERM 565 1332305 - 1332319 + g 78 -5.7 -4.8622 | TTAAGCTCCTTGACA GCAGA AGACC TCTGC TTTTTCGTTACACCA thrS 1334422 - 1332575 - | threonyl-tRNA synthetase TERM 566 1334643 - 1334631 - g 71 -4.9 -4.57921 | CATAATAAAAAAATA CAAAT AGC ATTTG CTGAATCATGCACAG APH_1265 1334562 - 1335077 + | competence/damage inducible protein CinA rplS 1335481 - 1335095 - | 50S ribosomal protein L19 trmD 1336183 - 1335485 - | tRNA (guanine-N1)-methyltransferase rimM 1336695 - 1336180 - | 16S rRNA processing protein RimM TERM 567 1336278 - 1336268 - G 70 -5.4 -4.42639 | opp_overlap 1336268 ATATTTGAAGTAAAA GAGA ACA TCTC CTTCTTTCCTTGAGG p44-16 1338106 - 1336817 - | P44-16 outer membrane protein TERM 568 1337366 - 1337381 + g 80 -4.6 -5.18726 | CGTGCTCTTTCCCGC CTGACC AGTA GGCCAG TTTTTATTCTCCGAC APH_1270 1339021 - 1338194 - | aminomethyl transferase family protein APH_1271 1341015 - 1339102 - | CcmF/CcyK/CcsA family cytochrome c biogenesis protein TERM 569 1340562 - 1340552 - G 71 -6.8 -4.16284 | overlap 1340560 ATATCTTGTAATAAA GGGT TAA ACCC AAGACCATCTTCGGT APH_1273 1342590 - 1342694 + | P44 outer membrane protein, C-terminal fragment TERM 570 1343674 - 1343704 + F 100 -22.8 -3.04501 | overlap 1343677 TAAGGTGGTTTGTTG GAAGCGGGGTAAGT CAA ACTTACCCCGCTTC TATTAGGGAGTTAGT TERM 571 1343677 - 1343701 + F 100 -18.7 -3.66556 | overlap 1343674 GGTGGTTTGTTGGAA GCGGGGTAAGT CAA ACTTACCCCGC TTCTATTAGGGAGTT TERM 572 1344498 - 1344483 - g 80 -4.6 -5.18726 | GTCGGAGAATAAAAA CTGGCC TACT GGTCAG GCGGGAAAGAGCACG p44-16b 1343722 - 1345008 + | P44-16b outer membrane protein ispF 1345683 - 1345210 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 1346645 - 1345938 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 573 1346960 - 1346972 + H 71 -6.3 -4.15006 | GCATGGGTTTTAGTA CACAA GCG TTGTG TTTTCCAATGCGTCT APH_1278 1347045 - 1348874 + | hypothetical protein TERM 574 1348865 - 1348883 + T 82 -11 -3.48276 | opp_overlap 1348865 1348866, overlap 1348866 GATCATATCTGAAAA TGCGCGAT AAT ATCGCGCG TTATGTACACACCCA TERM 575 1348883 - 1348865 - T 82 -8.8 -4.17657 | opp_overlap 1348865 1348866, overlap 1348866 GATCATATCTGAAAA TGCGCGAT AAT ATCGCGCG TTATGTACACACCCA TERM 576 1348866 - 1348882 + T 83 -12.3 -2.68823 | opp_overlap 1348865 1348866, overlap 1348865 ATCATATCTGAAAAT GCGCGAT AAT ATCGCGC GTTATGTACACACCC TERM 577 1348882 - 1348866 - T 85 -12.3 -3.10112 | opp_overlap 1348866 1348865, overlap 1348865 ATCATATCTGAAAAT GCGCGAT AAT ATCGCGC GTTATGTACACACCC purE 1349711 - 1349214 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 578 1349344 - 1349332 - G 100 -10.5 -4.30844 | ACTGCAGCATTAAAA GCCCC TGC GGGGC CAATAGCCATAGTTG APH_1280 1350252 - 1349704 - | hypothetical protein ihfA 1350590 - 1350910 + | integration host factor, alpha subunit APH_1282 1350907 - 1351284 + | MerR family transcriptional regulator ychF 1352303 - 1353394 + | translation-associated GTPase TERM 579 1353516 - 1353540 + T 93 -10.1 -4.66609 | overlap 1353517 GGTAGTACTTTGCTC CCTAAGGTGTA GTG TACACCTTAGC TTTTTCGATGGCGTG TERM 580 1353517 - 1353539 + T 95 -13.6 -3.39483 | overlap 1353516 GTAGTACTTTGCTCC CTAAGGTGTA GTG TACACCTTAG CTTTTTCGATGGCGT APH_1286 1354188 - 1354039 - | hypothetical protein p44-32 1354240 - 1355508 + | P44-32 outer membrane protein trmE 1355710 - 1357047 + | tRNA modification GTPase TrmE TERM 581 1358383 - 1358399 + T 81 -7.3 -4.55287 | TGCTTGATAGTTATT CCTGTAT TAA ATACGGG TTTTCTATAGATCGC APH_1290 1358842 - 1358378 - | hypothetical protein APH_1291 1359256 - 1358849 - | hypothetical protein ftsZ 1360458 - 1359256 - | cell division protein FtsZ APH_1293 1360724 - 1361059 + | hypothetical protein APH_1294 1361434 - 1361204 - | hypothetical protein APH_1295 1362116 - 1361817 - | hypothetical protein APH_1296 1363050 - 1362919 - | hypothetical protein APH_1297 1363900 - 1363367 - | phosphopantothenoylcysteine decarboxylase TERM 582 1363875 - 1363863 - G 71 -9.1 -3.30159 | opp_overlap 1363862 1363860 1363863 TCAAGTGCTTTATAA GCAGC AAC GCTGC CTGTTATTAGTAGTA recG 1363910 - 1366018 + | ATP-dependent DNA helicase RecG APH_1299 1366192 - 1367133 + | NADH-ubiquinone oxidoreductase family protein purF 1368630 - 1367224 - | amidophosphoribosyltransferase TERM 583 1368565 - 1368579 + g 73 -10 -3.04398 | opp_overlap 1368572, overlap 1368564 1368567 CAACAGGCACTTGTG CACAGC ATT GCTGTG ATTTTGCACGGCAAA pth 1369524 - 1368973 - | peptidyl-tRNA hydrolase APH_1302 1370169 - 1369534 - | 50S ribosomal protein L25/general stress protein Ctc APH_1303 1371215 - 1370562 - | comF family protein APH_1304 1371348 - 1371238 - | hypothetical protein APH_1305 1373167 - 1371452 - | glutathione-regulated potassium-efflux system protein TERM 584 1372279 - 1372267 - G 76 -6.9 -4.52345 | ATAGCATCAAAGAAA GCGAC AAA GCCGC AACAACAGGTAGCTT APH_1306 1373751 - 1373179 - | hypothetical protein TERM 585 1373787 - 1373773 - R 71 -7.2 -3.94 | TCAACCCGGAAACAA GAATGT TGT ACATTC TAAGCTTTCGCGCAG APH_1307 1374595 - 1374152 - | hypothetical protein APH_1308 1375979 - 1374981 - | pyruvate dehydrogenase subunit beta TERM 586 1375781 - 1375768 - G 75 -5.9 -4.62471 | overlap 1375750 TTTAATCCGCAAAAA GCCGC CCCT ACGGC CAATCCAGTAAAACC tldD 1376648 - 1378069 + | TldD protein p44-24 1379532 - 1378339 - | P44-24 outer membrane protein TERM 587 1379580 - 1379550 - R 100 -22.8 -3.04501 | overlap 1379553 ACTAACTCCCTAATA GAAGCGGGGTAAGT TTG ACTTACCCCGCTTC CAACAAACCACCTTA TERM 588 1379577 - 1379553 - R 100 -18.7 -3.66556 | overlap 1379550 AACTCCCTAATAGAA GCGGGGTAAGT TTG ACTTACCCCGC TTCCAACAAACCACC TERM 589 1380732 - 1380742 + r 72 -4.6 -4.8048 | overlap 1380724 CTTTAGCTACCGCTT CGGC ATT GTCG TTTTTAGTATCAGAA ribA 1382836 - 1381745 - | GTP cyclohydrolase II APH_1316 1384076 - 1383048 - | TPR domain-containing protein TERM 590 1383272 - 1383289 + g 87 -8.5 -4.44046 | opp_overlap 1383266 TGGAACTAAGAGCCT TACTCAC TAAA GTGAGTA TTTCTTTCAAATCCC APH_1317 1384618 - 1384151 - | hypothetical protein TERM 591 1384203 - 1384179 - G 74 -4.9 -4.91109 | TTCCTAGGACAAAAA CTACCTAGAGG TAA CATCTCGGCAG CTGACATGCTAGATA APH_1318 1384733 - 1384596 - | hypothetical protein TERM 592 1385263 - 1385283 + r 84 -12.7 -3.07233 | overlap 1385253 1385265 TCACTCCAGTGCTAC CATGAAGGA GAT TCCTTCATG TATTACGCGTTCTGG TERM 593 1385265 - 1385281 + r 72 -9.5 -3.09135 | overlap 1385263 1385253 ACTCCAGTGCTACCA TGAAGGA GAT TCCTTCA TGTATTACGCGTTCT APH_1320 1387338 - 1386913 - | hypothetical protein TERM 594 1387248 - 1387260 + g 100 -7.7 -5.56264 | opp_overlap 1387247 1387248 ATACGCGGGATAAAC TACGG CTG CCGTA TTTTTTGTGTTTGAC pgk 1387822 - 1388976 + | phosphoglycerate kinase xseA 1390241 - 1389045 - | exodeoxyribonuclease VII, large subunit TERM 595 1389418 - 1389428 + gT 70 -5.4 -4.42765 | AATTTTTCGTTTATG CTAG CAA CTAG TTTACTTTTTTCCGG TERM 596 1389845 - 1389828 - GT 79 -7 -4.56597 | CTTTGTCGGTAAAAA CGGAAG CTTTTT CTTCCG TGCAGGGCTAAAAAG APH_1323 1390827 - 1390210 - | zinc finger-like domain-containing protein TERM 597 1390733 - 1390719 - GH 70 -3.5 -4.82901 | opp_overlap 1390726 1390728 TTTCTGGCATAAAAA GCCAC GTGTG GTGAC AGTGAGAACACTTTA TERM 598 1392844 - 1392830 - g 73 -2.8 -5.14563 | overlap 1392841 TCCTTGACGAAAAAA CAGG AGAAAGA CCTG TGAAAACTGGAAAAG APH_1325 1391665 - 1392915 + | MSP2 family outer membrane protein secF 1394347 - 1393430 - | preprotein translocase subunit SecF TERM 599 1393594 - 1393582 - G 75 -10.5 -2.89314 | overlap 1393579 1393577 CACATAATAACATCA GCGGC AGA GCCGC GAGCATTGTAGTACC APH_1327 1395107 - 1394961 - | hypothetical protein TERM 600 1395295 - 1395316 + r 76 -2.3 -5.4833 | gap 1, overlap 1395296 1395297 CCTTCAATAGTTTTA GC-TAGTAGC CCT GCTACTATGG TTTTTTCTTCAGTGG TERM 601 1395297 - 1395313 + r 77 -9.5 -3.5087 | overlap 1395296 1395295 TTCAATAGTTTTAGC TAGTAGC CCT GCTACTA TGGTTTTTTCTTCAG TERM 602 1395902 - 1395887 - R 70 -9 -3.21993 | ATCTATAATAGGTAA CTGGCA TGCT TGCCAG CAAAGGCGGAGATTT TERM 603 1396137 - 1396156 + r 100 -5.8 -5.8187 | gap 1, overlap 1396138 CTTCAATAGTCTTAG C-TAGTAGC CCT GCTACTATG TTTTTTTCTTCGGTG TERM 604 1396138 - 1396154 + r 91 -9.5 -4.54306 | overlap 1396137 TTCAATAGTCTTAGC TAGTAGC CCT GCTACTA TGTTTTTTTCTTCGG smpB 1398541 - 1398092 - | SsrA-binding protein ribB 1399178 - 1398549 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 605 1398692 - 1398679 - G 74 -9.5 -3.37466 | overlap 1398677 AGCTCACAGATAACA GCGGC ATGA GCCGC ACCTGCCAATTTGGC greA 1399693 - 1399193 - | transcription elongation factor GreA atpA 1401241 - 1399721 - | F0F1 ATP synthase subunit alpha TERM 606 1400758 - 1400781 + g 74 -4.6 -4.84761 | CACGCTGCCCACGCC CGATAGGAAT AAGC ATATCTATCG TTTTTATCCCCGTCT atpH 1401802 - 1401260 - | ATP synthase F1, delta subunit APH_1336 1401923 - 1401786 - | hypothetical protein APH_1337 1402247 - 1401987 - | hypothetical protein APH_1338 1402342 - 1402250 - | hypothetical protein APH_1339 1403568 - 1402330 - | hypothetical protein APH_1340 1404275 - 1403565 - | hypothetical protein APH_1341 1405563 - 1404364 - | LolC/E family lipoprotein releasing system, transmembrane protein TERM 607 1404804 - 1404793 - G 78 -2.2 -5.55769 | CGTCAGAATAAAAAA CATG GCAT CACG CTCTAATTCCAATGC TERM 608 1404831 - 1404843 + g 70 -7.7 -3.66803 | ATGCGTAGAAGTACT GTCCA TGC TGGAC TTTCCAATCTTCCAC TERM 609 1406790 - 1406806 + r 74 -5.1 -4.77036 | overlap 1406793 1406802 CTCTTACTCTATCCC TTAGACC CTT GGTCTTA TTTTTAATAATAAGA TERM 610 1406793 - 1406803 + r 79 -6.8 -4.49314 | overlap 1406790 1406802 TTACTCTATCCCTTA GACC CTT GGTC TTATTTTTAATAATA TERM 611 1407329 - 1407345 + r 75 -9.5 -3.41701 | overlap 1407328 1407327 TTCAATAGTTTTAGC TAGTAGC CCT GCTACTA TGGTTTTTTCGTCAC TERM 612 1408413 - 1408429 + r 73 -9.5 -3.23975 | overlap 1408412 1408411 TTCAATAGTTTTAGC TAGTAGC CCT GCTACTA TGGTTTTTCAGGAGT TERM 613 1408522 - 1408535 + r 79 -6.7 -4.55093 | opp_overlap 1408521 TTTGTCGTAAGCTAT GGGTT ATGG AACCC TTTCTTCTTCTGTCC APH_1344 1409258 - 1408824 - | hypothetical protein APH_1345 1409979 - 1409278 - | hypothetical protein APH_1346 1411247 - 1410234 - | putative aspartate-semialdehyde dehydrogenase TERM 614 1410849 - 1410865 + g 71 -8.7 -3.33798 | opp_overlap 1410847, overlap 1410850 1410857 1410858 1410859 1410861 TTCTATCAACTGAGA TGCCATG CTA CATGGCG TTGCTATGATATTTC TERM 615 1410850 - 1410864 + g 71 -10 -2.59556 | opp_overlap 1410847, overlap 1410849 1410857 1410858 1410859 1410861 TCTATCAACTGAGAT GCCATG CTA CATGGC GTTGCTATGATATTT APH_1347 1411558 - 1411250 - | hypothetical protein dnaX 1412940 - 1411570 - | DNA polymerase III, subunits gamma and tau TERM 616 1412548 - 1412536 - G 70 -7.7 -3.64283 | overlap 1412545 CAAAGTCTTTAATAA CGCAT TAA ATGCG CTAGTGGAGAGCATA gap 1414119 - 1413112 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 617 1417431 - 1417449 + H 91 -10.2 -4.64076 | opp_overlap 1417429 1417431 TTGCTTATCTAAAGA GGGGGGCT AAG GGCTCCCC TTTTCTACTTTAATT APH_1353 1417557 - 1417700 + | hypothetical protein TERM 618 1418715 - 1418727 + G 71 -3.3 -4.94972 | opp_overlap 1418710 TTATTGGAAAGCATG CGTAG CAG CGACG TTTTTGGTTCTGATG recA 1417716 - 1418780 + | recombinase A p44-79 1420199 - 1418814 - | P44-79 outer membrane protein TERM 619 1418868 - 1418880 + g 79 -3.3 -5.27779 | opp_overlap 1418869, overlap 1418867 1418869 TTTCATGCTAAAATT AGCAG TGG CTGCG TTTTTTGATCTTCCC TERM 620 1419758 - 1419742 - G 73 -7.3 -4.20516 | TCTTTAGCTAATAAA TACACTG TAT CAGCGTA ATCCTCTGTATCTCT APH_1356 1420511 - 1420398 - | hypothetical protein TERM 621 1421907 - 1421925 + H 70 -5.4 -4.3255 | ATATTACTTCCTTTC CATTAGTT ATT AATTAATG TTTATTCCTTAAAAA APH_1358 1422028 - 1422888 + | major outer membrane protein TERM 622 1423255 - 1423266 + G 78 -5.8 -4.89477 | TCGGTTAGAGTTGCT CCTC TTGA GAGG TTTTCTTCTTCGGAA TERM 623 1423426 - 1423440 + G 72 -7.2 -3.91196 | AGGCTAGAATTTGAG TTTCTC CGT GAGAAA TTTGATATATCTAGA APH_1359 1423072 - 1423944 + | major outer membrane protein OMP-1A ubiD 1424029 - 1425522 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APH_1361 1425808 - 1426905 + | major surface protein 2 APH_1362 1426892 - 1426987 + | hypothetical protein APH_1363 1427331 - 1427206 - | hypothetical protein APH_1364 1427541 - 1427419 - | hypothetical protein APH_1365 1428516 - 1428358 - | hypothetical protein secD 1430046 - 1428520 - | preprotein translocase subunit SecD TERM 624 1430320 - 1430310 - g 82 -6.8 -4.77165 | opp_overlap 1430311 1430313, overlap 1430311 TTGCTCATAATAAAA CGCT TGC AGCG CAGCTTTATGAAGAA uvrB 1430111 - 1432072 + | excinuclease ABC subunit B APH_1368 1432936 - 1433073 + | hypothetical protein APH_1369 1433283 - 1433498 + | hypothetical protein APH_1370 1433568 - 1433843 + | hypothetical protein APH_1371 1435424 - 1434552 - | uracil-DNA glycosylase def 1436234 - 1435671 - | peptide deformylase APH_1373 1436300 - 1437025 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein rpsT 1437151 - 1437441 + | 30S ribosomal protein S20 APH_1375 1439569 - 1439294 - | peptide deformylase, truncation lgt 1441175 - 1440342 - | prolipoprotein diacylglyceryl transferase mviN 1441260 - 1442768 + | integral membrane protein MviN APH_1378 1442808 - 1443824 + | hypothetical protein APH_1379 1444046 - 1444318 + | hypothetical protein APH_1380 1445020 - 1444598 - | hypothetical protein APH_1381 1445037 - 1445177 + | hypothetical protein APH_1382 1445637 - 1445867 + | hypothetical protein APH_1383 1446449 - 1445949 - | hypothetical protein APH_1384 1447090 - 1446608 - | hypothetical protein APH_1385 1447778 - 1447176 - | hypothetical protein APH_1386 1448342 - 1447911 - | hypothetical protein APH_1387 1448863 - 1450599 + | HGE-2 protein TERM 625 1450619 - 1450657 + T 100 -9.7 -5.29846 | gap 1, opp_overlap 1450619 1450622 TCTTTCTCGTGAAAA GTATGGGG-AAGGTTCGA TGTG TTGAACCGTGCCCCATGC TTTTTCTTTAAGATT APH_1388 1451122 - 1450925 - | hypothetical protein TERM 626 1450999 - 1451036 + g 71 -10.1 -2.57501 | gap 1, opp_overlap 1451004 1451006, overlap 1450998 1450997 1450995 1451001 GTCCTAATGCTGTTA CATGA-CATGGGTAATGC ATA GCATTATCAATGGTCATG GTGTCTTTAGTAGGC p44-11 1454572 - 1453433 - | P44-11 outer membrane protein APH_1393 1454623 - 1454745 + | hypothetical protein APH_1394 1455551 - 1454943 - | hypothetical protein TERM 627 1455506 - 1455494 - G 75 -3.3 -5.24799 | CCACAAACATAAAAA GAGAC AAC GTCAC AACACGGCAAAACGT APH_1395 1456533 - 1455628 - | cation efflux family protein TERM 628 1455898 - 1455919 + g 73 -3.7 -5.06451 | ATTATACGGCTTGCC CTCGAGCAA AATG TTACTTGAG TTTTTTACAATACTA APH_1397 1457291 - 1456647 - | putative heme exporter protein CcmB APH_1398 1457417 - 1457851 + | putative dnaK suppressor protein virD4 1462420 - 1460198 - | type IV secretion system protein VirD4 virB11 1463470 - 1462472 - | type IV secretion system protein VirB11 TERM 629 1462731 - 1462719 - G 70 -2.7 -5.02476 | overlap 1462707 ATAGCCCTCAAAAAA CTAAA GGC TTCAG CACCCCTCAACTCCC virB10 1464821 - 1463517 - | type IV secretion system protein VirB10 virB9-2 1465690 - 1464845 - | type IV secretion system protein VirB9 virB8 1466390 - 1465674 - | type IV secretion protein VirB8 APH_1407 1466573 - 1466475 - | hypothetical protein recF 1469423 - 1468308 - | recombination protein F APH_1410 1469677 - 1469558 - | hypothetical protein APH_1411 1470273 - 1470410 + | hypothetical protein APH_1412 1471214 - 1470771 - | hypothetical protein