TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.578115 %AT, 2436386 nt, 14265 terms. Intergenic: 0.606667 %AT, H2T: 515596 nt, 2493 terms; T2T: 99737 nt, 1970 terms; H2H: 122285 nt, 1273 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|212637849|ref|NC_011567.1| Anoxybacillus flavithermus WK1, complete genome (length 2846746) TERM 1 1528 - 1514 - g 75 -7.2 -4.2803 | overlap 1522 CATTTTAATGTAAAA CTTGAA GAT TTCAAG GCGAAAAAGCGGACA dnaA 401 - 1744 + | DNA replication initiation ATPase TERM 2 1769 - 1800 + F 100 -13.8 -3.82857 | overlap 1766 CTACTTTATGTTTGT GCACAGTCTGTCCA CATG TGGATAGTCTGTGC TTCCTTTGTTTTACT TERM 3 1840 - 1858 + F 72 -3.2 -5.0133 | ACATAATCACAGCGC CTATTACT ATG ATTAATAG TTTTTTAAAAAAATA TERM 4 2956 - 2971 + G 71 -4 -4.7497 | gap 1 TAAAATTAGTTTTAC TGGT-GC AAT GCGACCA TTTTTAATCCGTCCG dnaN 1901 - 3037 + | DNA polymerase sliding clamp subunit TERM 5 3035 - 3065 + F 81 -6.9 -4.6971 | opp_overlap 3040, overlap 3040 CCTGTGCGCACATAT TAAAAGCTGCTAG ATGAA CTAGCAGCTTTCC TTTTCTTCACCTTTC TERM 6 3040 - 3060 + F 93 -11.2 -4.3295 | opp_overlap 3040, overlap 3035 GCGCACATATTAAAA GCTGCTAG ATGAA CTAGCAGC TTTCCTTTTCTTCAC TERM 7 3060 - 3040 - f 93 -11.2 -4.39166 | opp_overlap 3035 3040 GCGCACATATTAAAA GCTGCTAG ATGAA CTAGCAGC TTTCCTTTTCTTCAC TERM 8 3163 - 3152 - g 82 -3 -5.5454 | overlap 3142 TGAAAGAAATAAAAA TTTC AACA GAAA CCATTACACTCGGAC Aflv_0003 3136 - 3348 + | S4-like RNA binding protein TERM 9 3350 - 3361 + G 78 -5.8 -4.85782 | CGATTTGTTCGTGAA GGTG GGAG CACC TTTGTTTTTGGAACA recF 3339 - 4478 + | Recombinational DNA repair ATPase RecF TERM 10 6073 - 6083 + G 90 -4 -5.64274 | CACACATTCGTACAC TGTT ATT AACA TTTTTTTATCGCTAC gyrB 4533 - 6455 + | DNA gyrase subunit B gyrA 6528 - 8978 + | DNA gyrase subunit A TERM 11 8973 - 8998 + F 72 -8.3 -3.53012 | gap 1, opp_overlap 8964 8976 8980 8981, overlap 8981 GAACAATTGCAAGAA GAATAGAGGGGG GTT CCCCC-CTATGC TTTACAAAGGCGGGG TERM 12 8995 - 8976 - f 86 -10 -3.97139 | opp_overlap 8973 8981, overlap 8964 8980 8981 CAATTGCAAGAAGAA TAGAGGGG GGTT CCCCCCTA TGCTTTACAAAGGCG TERM 13 8992 - 8980 - f 77 -10.5 -3.35255 | opp_overlap 8973 8981, overlap 8976 8964 8981 TGCAAGAAGAATAGA GGGGG GTT CCCCC CTATGCTTTACAAAG TERM 14 8981 - 8993 + F 75 -10.5 -3.00525 | opp_overlap 8980 8981 8976 8964, overlap 8973 GCAAGAAGAATAGAG GGGGG TTC CCCCC TATGCTTTACAAAGG TERM 15 8993 - 8981 - f 72 -10.5 -2.6043 | opp_overlap 8973 8981, overlap 8980 8976 8964 GCAAGAAGAATAGAG GGGGG TTC CCCCC TATGCTTTACAAAGG Aflv_0007 8995 - 10107 + | c-di-GMP phosphodiesterase class II (HD-GYP domain) TERM 16 10100 - 10133 + T 100 -6.3 -6.41805 | gap 1, opp_overlap 10100 10105 10106 GCATTGAAGAAATTA TAAAATGACAATGG CGATTGT CCAT-GTCATTTTA TTTTTTTTTTAATAA TERM 17 10419 - 10404 - T 72 -9 -3.32343 | overlap 10415 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 18 11529 - 11517 - T 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 19 11856 - 11838 - T 73 -10.4 -2.85909 | AAAAGCGGAGAACGA TTCTTGAC GTA GTCAAGAA AACATCCGACGGAAG TERM 20 11891 - 11859 - T 74 -4.8 -4.68384 | gap 1, overlap 11862 11871 11890 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 21 11976 - 11960 - T 72 -3.6 -5.07523 | overlap 11961 TAGACATAAAGAAAA GCGGAG GACTT CTCCGT ACATGTTGACAAACA TERM 22 12800 - 12781 - T 89 -12.2 -3.66803 | opp_overlap 12780 12779 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 23 13837 - 13819 - T 71 -6 -4.21194 | overlap 13823 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 24 14333 - 14320 - T 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 25 15515 - 15481 - T 70 -7.7 -3.72453 | gap 1, opp_overlap 15482, overlap 15474 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGGTTCGAGG TERM 26 15902 - 15879 - T 93 -11.1 -5.06414 | opp_overlap 15879 GCCGGGCAAGAAAAA GACCAAGAC AAGTTA GTCTTGGTC TTTTTTATTATGTAA TERM 27 15879 - 15902 + T 100 -11.1 -5.60689 | opp_overlap 15879 GCCGGGCAAGAAAAA GACCAAGAC AAGTTA GTCTTGGTC TTTTTTATTATGTAA yaaC 16592 - 15891 - | hypothetical protein TERM 28 16165 - 16128 - G 70 -7.9 -3.63744 | opp_overlap 16141, overlap 16132 16133 16137 16141 TGCTTGTTTAAAATA TAAATCAAATAAAGGAG TTAG CTCCTCTATCTGCTCTA ACAACTGTTTCATGC TERM 29 16161 - 16132 - G 74 -6.5 -4.45168 | opp_overlap 16141, overlap 16128 16133 16137 16141 TGTTTAAAATATAAA TCAAATAAAGGAG TTAG CTCCTCTATCTGC TCTAACAACTGTTTC TERM 30 16160 - 16133 - G 76 -10 -3.26378 | opp_overlap 16141, overlap 16132 16128 16137 16141 GTTTAAAATATAAAT CAAATAAAGGAG TTAG CTCCTCTATCTG CTCTAACAACTGTTT TERM 31 16156 - 16137 - G 75 -7.2 -4.25088 | opp_overlap 16141, overlap 16133 16132 16128 16141 AAAATATAAATCAAA TAAAGGAG TTAG CTCCTCTA TCTGCTCTAACAACT TERM 32 16152 - 16141 - G 75 -5.8 -4.65182 | opp_overlap 16141, overlap 16137 16133 16132 16128 TATAAATCAAATAAA GGAG TTAG CTCC TCTATCTGCTCTAAC TERM 33 16201 - 16216 + g 84 -6.2 -5.00884 | opp_overlap 16215 TTTTCCCCATATGCA TGTTTC ACAT GAAACA TTTTTTCAGAAAAAT TERM 34 18093 - 18081 - g 82 -4.8 -5.33785 | AACTACGAGAAAAAA CGCA ATTTG TGCG CATGACTGGAGCAGG guaB 16709 - 18175 + | IMP dehydrogenase/GMP reductase TERM 35 18184 - 18212 + F 100 -6.8 -6.34424 | opp_overlap 18160 18184 TATGTAGTAAATGCA TAGGCAGAGG TGGAAGATT CCTCTGTCTA TTTTTTTTTTCAAGA dacA 18260 - 19603 + | D-alanyl-D-alanine carboxypeptidase TERM 36 19598 - 19629 + F 100 -14 -5.25772 | opp_overlap 19605, overlap 19625 GCGATCAAAGGGTTA TTTTAAAGCTCTCT TTTT AGAGGGCTTTAAAA TTTTTATTATGATTT pdxS 19816 - 20700 + | Pyridoxine biosynthesis enzyme PDX1/PDX2, synthetase subunit TERM 37 20867 - 20879 + G 78 -9.1 -3.767 | opp_overlap 20864 20867 CAGGTGGGGAAAGTA CGACG ATG CGTCG TTTAATGGATAAATA pdxT 20719 - 21297 + | Pyridoxine biosynthesis enzyme PDX1/PDX2, glutaminase subunit TERM 38 21556 - 21583 + F 100 -10.6 -5.72053 | overlap 21548 GGCAACGCGGGAGCA CTCTCGTCCC TTTCTTTC GGGACGGGAG TTTTTTATTTCATTA TERM 39 21792 - 21776 - g 77 -6.5 -4.72473 | opp_overlap 21791 GGAATTAAAAAATAA GCGAAAC GAT GTGTCGC AACAAATTGCTTTAC TERM 40 21837 - 21825 - g 88 -3.4 -5.77853 | opp_overlap 21825 AAGCGTGAAAAAAAA GATG CGGAT CATC TCATTGCTGAAATGC TERM 41 22007 - 22019 + G 74 -6.3 -4.54727 | AATTCGTAAATGGGG TGAAC CGC GTTCA TTTTCCTTTGAACCG TERM 42 22134 - 22150 + G 76 -10.9 -2.6585 | overlap 22133 TATAAAGGACTTGGG GCACGTT TGG AACGTGC ATTGATTAACTTTAT TERM 43 22286 - 22272 - g 80 -10 -3.66772 | CCAAAGTTTGAAGAA GATGCG TTT CGCATC GAAAGTGAAGATTAC serS 21618 - 22898 + | Seryl-tRNA synthetase TERM 44 22916 - 22899 - T 70 -8.4 -3.33969 | opp_overlap 22899 GAAGTGATTTCATAA GGGGAG AACTTG CTCCCC TTTTTTATAAAAAAT TERM 45 22899 - 22916 + T 93 -8.4 -5.24531 | opp_overlap 22899 GAAGTGATTTCATAA GGGGAG AACTTG CTCCCC TTTTTTATAAAAAAT TERM 46 23126 - 23146 + T 100 -9.1 -5.58522 | opp_overlap 23126 TGTTTATTGAAATAA TTCGTTACG ATA TGTAACGAA TTTTTGTTTTATATA TERM 47 23146 - 23126 - T 77 -8.4 -3.96216 | opp_overlap 23126 TGTTTATTGAAATAA TTCGTTAC GATAT GTAACGAA TTTTTGTTTTATATA TERM 48 23201 - 23172 - T 86 -4.4 -5.35721 | gap 1, opp_overlap 23174 23177, overlap 23177 ATATAAGAATAAAAA GTAAAGGATGCCT GAACT AGGCATCC-TTAT TTTTTTAACGTGCGA TERM 49 23174 - 23200 + T 100 -10.2 -5.44119 | opp_overlap 23172 23177, overlap 23177 ATAAGAATAAAAAGT AAAGGATGCCTG AAC TAGGCATCCTTA TTTTTTTAACGTGCG TERM 50 23177 - 23197 + T 100 -11.9 -4.80853 | opp_overlap 23177 23172, overlap 23174 AGAATAAAAAGTAAA GGATGCCTG AAC TAGGCATCC TTATTTTTTTAACGT TERM 51 23197 - 23177 - T 93 -11.2 -4.44392 | opp_overlap 23174 23177, overlap 23172 AGAATAAAAAGTAAA GGATGCCT GAACT AGGCATCC TTATTTTTTTAACGT dck 23866 - 23198 - | Deoxyadenosine/deoxycytidine kinase TERM 52 23617 - 23632 + g 89 -6.2 -5.38549 | overlap 23623 GGACAAATCCTCCTC CGTATT CAAA AATACG TTTTTGTTCTTTGAA dgk 24501 - 23863 - | Deoxyguanosine kinase Aflv_0016 24592 - 25125 + | Cytosine/adenosine deaminase TERM 53 25487 - 25509 + F 100 -9.9 -5.19261 | opp_overlap 25486 ATAGATAGGACACAG GCACTTGCT CAAAT GGCAAGTGC TTTTTTCATGCGTTT TERM 54 26360 - 26370 + G 71 -4.6 -4.64657 | overlap 26369 AAAAAAGACGGTTGA GGCG TTA CGTC TTTTTCAAGATTTAA dnaX 25572 - 27251 + | DNA polymerase III tau subunit yaaK 27259 - 27591 + | hypothetical protein TERM 55 27650 - 27687 + G 80 -2.6 -5.47159 | overlap 27651 ACAGTTTTATGAAAT TGCCAGGC-ATCGGACCG AAAA CGG-CCGTCCGTCTGGCG TTTTTTGTGTTAAAC recR 27601 - 28197 + | Recombinational DNA repair protein RecR TERM 56 28327 - 28309 - g 84 -3.8 -5.50925 | overlap 28310 AATTAATAGAAAAAA GTGTCGAA CCA TCCGACAA AGTCATCTTCGATTT TERM 57 28326 - 28310 - g 70 -7.3 -3.88115 | overlap 28309 ATTAATAGAAAAAAG TGTCGAA CCA TCCGACA AAGTCATCTTCGATT yaaL 28197 - 28418 + | hypothetical protein TERM 58 28407 - 28429 + F 86 -10.6 -3.84712 | opp_overlap 28406 28405 CGAAAAGTGACAATT GGGAAGGG ATGATTC CCCTTCCC TTTCATATAGGCTTG bofA 28415 - 28771 + | Sporulation regulation protein BofA TERM 59 28769 - 28788 + G 100 -9.4 -5.7946 | opp_overlap 28757 28773 CAATATGTCATTTCA TAAACGGA CATA TCCGTTTA TTTTTTTGTTGACGA Aflv_0022 28758 - 28910 + | hypothetical protein TERM 60 30594 - 30562 - f 74 -4.8 -4.68384 | gap 1, overlap 30565 30574 30593 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 61 30679 - 30663 - f 72 -3.6 -5.07523 | overlap 30664 TAGACATAAAGAAAA GCGGAG GACTT CTCCGT ACATGTTGACAAACA TERM 62 31481 - 31462 - f 89 -12.2 -3.66803 | opp_overlap 31461 31460 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 63 32518 - 32500 - f 71 -6 -4.21194 | overlap 32504 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 64 33014 - 33001 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 65 34330 - 34307 - f 90 -8.9 -5.06414 | opp_overlap 34307 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTCGGTC TTTTTTCTTTTTTGC TERM 66 34307 - 34330 + F 100 -6.7 -6.04324 | opp_overlap 34307 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTCGGTC TTTTTTCTTTTTTGC csfB 34359 - 34607 + | Uncharacterized conserved protein CsfB Aflv_0024 34689 - 36113 + | Arginine/lysine/ornithine decarboxylase tmk 36115 - 36744 + | Thymidylate kinase holB 36755 - 37753 + | ATPase involved in DNA replication HolB yaaT 37746 - 38573 + | Regulator of signaling phosphorelay (PSP1/tpl family) yabA 38589 - 38936 + | Regulator of replication initiation timing TERM 67 38929 - 38969 + F 80 -10.6 -3.28712 | opp_overlap 38934, overlap 38934 TGTCATTTTTAAATA AAAAATAGCCTTTCTGAC AAATG GTCTGGAAGGCTATTTTG TTGTAGAAAGAGGGA TERM 68 38964 - 38934 - f 100 -8.3 -5.63517 | opp_overlap 38929 38934 TTTTTAAATAAAAAA TAGCCTTTCTGAC AAATG GTCTGGAAGGCTA TTTTGTTGTAGAAAG TERM 69 38934 - 38964 + F 93 -10.5 -4.77165 | opp_overlap 38934, overlap 38929 TTTTTAAATAAAAAA TAGCCTTTCTGAC AAATG GTCTGGAAGGCTA TTTTGTTGTAGAAAG yabB 38991 - 39725 + | Methyltransferase (UbiE/COQ5 family) yabC 39732 - 40598 + | Tetrapyrrole methyltransferase family enzyme TERM 70 40631 - 40606 - T 100 -11.3 -5.57396 | opp_overlap 40606 ATAAGTAAGAAAAAA GTTTCTCTAGA AAAA CCTAGAGAAAC TTTTTATTTTGATTG TERM 71 40606 - 40631 + T 100 -10.6 -5.54338 | opp_overlap 40606 ATAAGTAAGAAAAAA GTTTCTCTAG AAAAAC CTAGAGAAAC TTTTTATTTTGATTG abrB 40943 - 40635 - | Transcriptional regulator AbrB TERM 72 41386 - 41346 - H 73 -8.4 -3.76568 | gap 2, opp_overlap 41355, overlap 41354 TGATCGAGAATACAA GTATGCAATCGCTCTCGTCC TTT GGGCGAGAGCGTTT-C-TAC TACACGTGCGACAAG TERM 73 41380 - 41354 - H 83 -12.2 -3.16079 | opp_overlap 41355, overlap 41346 AATACAAGTATGCAA TCGCTCTCGTCC TTT GGGCGAGAGCGT TTCTACTACACGTGC TERM 74 41355 - 41379 + H 100 -17.9 -3.96624 | opp_overlap 41354 41346 ATACAAGTATGCAAT CGCTCTCGTCC TTT GGGCGAGAGCG TTTCTACTACACGTG TERM 75 41615 - 41605 - g 71 -2.4 -5.11112 | AAAGCGGAAGAAAAA GGGG TTA CTCC ACAACAGTATGTCGA metS 41392 - 43362 + | Methionyl-tRNA synthetase TERM 76 43356 - 43392 + F 100 -14 -3.80877 | opp_overlap 43354 43364, overlap 43360 43364 AAATGGTGCAAAAGT GAAGTAAAGAGGTGTT GCGAA AACACCTCTTTGTTTC TATTTTGTAACGTAA TERM 77 43360 - 43388 + F 93 -11.2 -4.51238 | opp_overlap 43354 43364, overlap 43356 43364 GGTGCAAAAGTGAAG TAAAGAGGTGTT GCGAA AACACCTCTTTG TTTCTATTTTGTAAC TERM 78 43384 - 43364 - f 86 -9.8 -3.99779 | opp_overlap 43360 43356 43364, overlap 43354 CAAAAGTGAAGTAAA GAGGTGTT GCGAA AACACCTC TTTGTTTCTATTTTG TERM 79 43364 - 43384 + F 93 -9.8 -4.77047 | opp_overlap 43364 43354, overlap 43360 43356 CAAAAGTGAAGTAAA GAGGTGTT GCGAA AACACCTC TTTGTTTCTATTTTG yabD 43479 - 44246 + | Mg-dependent DNAse yabE 44451 - 45644 + | hypothetical protein TERM 80 45648 - 45669 + F 100 -7.3 -5.68023 | opp_overlap 45648 ATTATAAAGTAATAA CAGAGGGTT TCGC GATCCTCTG TTTTTTTCGTTATAA rnmV 45706 - 46278 + | Ribonuclease M5 (TOPRIM domain) ksgA 46271 - 47158 + | Dimethyladenosine transferase (rRNA methylation) TERM 81 47150 - 47164 + G 95 -7.1 -5.43866 | opp_overlap 47150 CCCATTTTTTATGAA GAGGC TTAAT GCCTC TTTTTTTACACGTTC yabG 47145 - 48110 + | Peptidase involved in the proteolysis and maturation of SpoIVA and YrbA proteins TERM 82 48156 - 48119 - f 83 -7.2 -4.66814 | gap 1, opp_overlap 48117 48120, overlap 48120 48121 AACATAAACAACAAA CCTCTTGTCTTTTTGCC TTCGT GGTAAAAAGACAAG-GA TATCATTTTGTTTTT TERM 83 48155 - 48120 - f 70 -8.5 -3.37648 | gap 1, opp_overlap 48117 48120, overlap 48119 48121 ACATAAACAACAAAC CTCTTGTCTTTTTGCC TTCGT GGTAAAAAGACAAG-G ATATCATTTTGTTTT TERM 84 48120 - 48156 + F 73 -9.6 -3.2568 | opp_overlap 48120 48119 48121, overlap 48117 ACATAAACAACAAAC CTCTTGTCTTTTTGCC TTCGT GGTAAAAAGACAAGGA TATCATTTTGTTTTT veg 48266 - 48586 + | Uncharacterized conserved protein Veg TERM 85 48595 - 48618 + F 89 -4.5 -5.65177 | TTCATGACGGTTAAG GAGGCGACC AATATC GGTGGTCTC TTTTTTTGTAGCTAT TERM 86 49117 - 49127 + G 71 -6.8 -4.2349 | GAGCGGAGATTGGCT CGGA CGT TCCG TTTTGCGTATACGGA ispE 48705 - 49580 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase purR 49596 - 50420 + | Transcriptional repressor of the purine operon PurR yabJ 50454 - 50834 + | Translation initiation inhibitor, yjgF family TERM 87 51176 - 51162 - g 73 -10 -3.05844 | TGTTTTAGCTGAATA TCACCG TGC CGGTGA GTTGGAAAAAGAGCT spoVG 50911 - 51213 + | Stage V sporulation protein G required for spore cortex synthesis TERM 88 51226 - 51249 + F 78 -7.5 -4.34402 | gap 1, opp_overlap 51226, overlap 51246 TAATTATAAGAAAAA GGACCC-TCT CGAGA AGAAGGGTCC TTTTCATATGGAGAA TERM 89 51249 - 51226 - f 91 -8.2 -5.24416 | gap 1, opp_overlap 51226 51246 TAATTATAAGAAAAA GGACCC-TCTC GAG AAGAAGGGTCC TTTTCATATGGAGAA gcaD 51369 - 52775 + | UDP-N-acetylglucosamine pyrophosphorylase prs 52793 - 53743 + | Phosphoribosylpyrophosphate synthetase ctc 53800 - 54426 + | Ribosomal protein L25 (general stress protein Ctc) TERM 90 54429 - 54452 + G 100 -11.8 -4.16943 | opp_overlap 54421 54419 AACAACACCGTGACG GACGTAGCCA TCAT TGGTTACGTC TTTTGCGGTATGGAG spoVC 54423 - 55046 + | Peptidyl-tRNA hydrolase SpoVC yabK 55065 - 55343 + | Uncharacterized conserved protein, contains two CXXC motifs TERM 91 55346 - 55366 + G 100 -9.7 -5.26155 | opp_overlap 55344, overlap 55347 55360 ATTTATTCAATGATT GGCTTTGGG TTA CCCAAAGCG TTTTTGTATTTATGT TERM 92 55347 - 55365 + G 100 -13.2 -3.73253 | opp_overlap 55344, overlap 55346 55360 TTTATTCAATGATTG GCTTTGGG TTA CCCAAAGC GTTTTTGTATTTATG TERM 93 55564 - 55576 + G 74 -6.3 -4.41348 | AGCGACCTTTATGCA TTGTG ACG CACAA TTTATTTCAAGCGCA mfd 55344 - 58913 + | Transcription-repair coupling factor (helicase, mfd) TERM 94 59197 - 59172 - g 76 -7.7 -4.08317 | gap 1, opp_overlap 59174, overlap 59181 59183 TAATTCCAAAGGAAA TTCGCAGAACAC TTC GTATTC-GCGAA GGGGACCCACTTGAA TERM 95 59515 - 59496 - g 74 -9.4 -3.29142 | overlap 59492 59494 GTCATGAAGAACATA TGCAATCA TACG TGATTGCA CCGATTATTGCTGGA spoVT 59108 - 59644 + | Transcriptional regulator AbrB family TERM 96 59662 - 59646 - f 87 -8.7 -4.49364 | opp_overlap 59646 AAATGGAACAATAAA GGTAGCA TCT CGCTACC TTTTTTTGATGTATG TERM 97 59646 - 59662 + F 100 -8 -5.60864 | opp_overlap 59646 AAATGGAACAATAAA GGTAGC ATCTC GCTACC TTTTTTTGATGTATG TERM 98 59939 - 59951 + G 73 -2.6 -5.21459 | TCAACATATAAGTTT GCTG TTGTT CGGC TTTCTTTTTATTTTT TERM 99 60553 - 60570 + G 70 -3.5 -4.86621 | gap 1, overlap 60557 GTTTATTCAGCTTGG GACAGTAG TAG CTACT-TC TTTTTCATTAGCACT TERM 100 60557 - 60567 + G 70 -5.4 -4.53777 | overlap 60553 ATTCAGCTTGGGACA GTAG TAG CTAC TTCTTTTTCATTAGC TERM 101 61112 - 61124 + G 74 -7.7 -3.91821 | GGACGTCTGTTTTCA TCGCT TCA AGCGA TTATTGGTGTTTTTA yabM 59693 - 61258 + | Polysaccharide biosynthesis protein, Mvin family TERM 102 61353 - 61339 - g 70 -5.6 -4.35116 | opp_overlap 61339 61341, overlap 61341 TACCGTACATTAAAA CAGGCG AAT CGCCTC TTTTTACGAACGAAA TERM 103 61339 - 61353 + G 73 -5.6 -4.56597 | opp_overlap 61339 61341, overlap 61341 TACCGTACATTAAAA CAGGCG AAT CGCCTC TTTTTACGAACGAAA TERM 104 61341 - 61351 + G 75 -8.2 -3.90048 | opp_overlap 61339 61341, overlap 61339 CCGTACATTAAAACA GGCG AAT CGCC TCTTTTTACGAACGA TERM 105 61351 - 61341 - g 75 -8.2 -3.77806 | opp_overlap 61341 61339, overlap 61339 CCGTACATTAAAACA GGCG AAT CGCC TCTTTTTACGAACGA yabN 61261 - 62712 + | Tetrapyrrole methyltransferase domain fused to a MazG family NTP pyrophosphatase domain yabO 62714 - 62971 + | Ribosome-associated heat shock protein yabP 63035 - 63331 + | Spore coat-associated protein yabQ 63328 - 63936 + | Membrane protein involved in spore cortex formation TERM 106 64004 - 63992 - g 80 -2.7 -5.58209 | GTAAAGTGAAAAAAA TACAA ACA TCGTA TGTCATTCAACAAGA TERM 107 64048 - 64038 - g 88 -6.8 -5.21506 | ACAAGAATATAAAAA GACG CAA CGTC GTAAAAAAAAGGTGA divIC 63958 - 64329 + | Septum formation initiator TERM 108 64358 - 64391 + G 100 -9.9 -4.7416 | overlap 64360 AAGGCTTATTGACAC TTGTTTTTTTCATTA TGTA TAATGAAAGAAACGA TTTTTCAGATTTTAA TERM 109 64360 - 64389 + G 74 -10.3 -2.64962 | overlap 64358 GGCTTATTGACACTT GTTTTTTTCATTA TGTA TAATGAAAGAAAC GATTTTTCAGATTTT yabR 64358 - 64816 + | RNA binding protein (S1 domain) TERM 110 64853 - 64875 + F 82 -7.8 -4.59424 | opp_overlap 64853, overlap 64874 AGGCAGTTTATACAA GCATCCAT TCTATTT ATGGATGC TTTTCGTTTGGATTT TERM 111 65108 - 65149 + F 100 -16.3 -4.03978 | gap 1, opp_overlap 65117, overlap 65117 GAATCCCGTACGGGT CATAAGAAACACCAATTTCG TCA CGAAATTGGTGTTTTTT-TG TTTATATAAGCCGTT TERM 112 65141 - 65117 - f 100 -15.9 -4.30987 | opp_overlap 65108 65117 ACGGGTCATAAGAAA CACCAATTTCG TCA CGAAATTGGTG TTTTTTTGTTTATAT TERM 113 65117 - 65141 + F 100 -15.9 -6.04953 | opp_overlap 65117, overlap 65108 ACGGGTCATAAGAAA CACCAATTTCG TCA CGAAATTGGTG TTTTTTTGTTTATAT TERM 114 65990 - 66010 + G 70 -9.7 -2.52623 | overlap 65979 65989 CTTTTGTAGCCGGGG CTACCGTTG GTT CAACGGTCG GTGTTGTCACAGGGC TERM 115 66205 - 66229 + G 84 -3.5 -5.52384 | overlap 66211 66212 ATTGTCCCGAATATT GTGGAGTCGCT ATT AGCGGTTTTGC TTTTTTTGATGACCC TERM 116 66211 - 66223 + G 78 -5.5 -4.94243 | overlap 66205 66212 CCGAATATTGTGGAG TCGCT ATT AGCGG TTTTGCTTTTTTTGA TERM 117 67608 - 67598 - g 71 -3.2 -5.04356 | TTAAAGAATTAAAAA CGAA TGA TCCG CAAGAAGTATCTGAA spoIIE 65281 - 67752 + | Stage II sporulation protein E (serine phosphatase) yabS 67819 - 68562 + | Uncharacterized protein containing a von Willebrand factor type A (vWA) domain TERM 118 68752 - 68775 + GF 85 -8.9 -4.20768 | gap 1 GAGACGATTTTCAGA GGTCC-AGGG AGTTG CCCTCGGACC TTGTTTATTAGACGT yabT 68522 - 69478 + | Serine/threonine protein kinase yacA 69556 - 70938 + | tRNA(Ile)-lysidine synthase MesJ hprT 70939 - 71505 + | Hypoxanthine-guanine phosphoribosyltransferase TERM 119 71803 - 71813 + G 81 -5.4 -5.17353 | AATTAAAAACGTATG CTGA AGG TCAG TTTTTTACTACCTAT ftsH 71592 - 73475 + | ATP-dependent Zn protease FtsH TERM 120 73477 - 73501 + F 93 -7.2 -5.44119 | opp_overlap 73477 73479 AAAAAGAAGAATAAA GGTGTCTCTT TTTAT AAGAGGCATC TTTTTTTACCGTCGG coaX 73573 - 74349 + | Pantothenate kinase type III yacC 74346 - 75245 + | Disulfide bond chaperone of the HSP33 family cysK 75306 - 76241 + | Cysteine synthetase TERM 121 76242 - 76265 + F 100 -14 -5.89827 | opp_overlap 76242 CAGTTTGAGGAATAA TTCGGCAAGA ACAT TCTTGCCGAA TTTTTTTTCGTGATT TERM 122 76265 - 76242 - f 95 -14 -3.72324 | opp_overlap 76242 CAGTTTGAGGAATAA TTCGGCAAGA ACAT TCTTGCCGAA TTTTTTTTCGTGATT pabB 76338 - 77762 + | Anthranilate/para-aminobenzoate synthase component I TERM 123 78240 - 78222 - g 73 -7.5 -4.09215 | CAGATGAAGGAGAAA TTATGGC CATTC GCCATAA AACGCTGCCGATTGA pabA 77759 - 78343 + | Anthranilate/para-aminobenzoate synthase component II pabC 78350 - 79219 + | Aminodeoxychorismate lyase sul 79216 - 80052 + | Dihydropteroate synthase folB 80015 - 80404 + | Dihydroneopterin aldolase folK 80408 - 80938 + | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Aflv_0072 80884 - 81939 + | tRNA-dihydrouridine synthase TERM 124 81969 - 81942 - f 73 -7 -4.21936 | opp_overlap 81944, overlap 81944 CGTAGAATCGTAAAA CATACTGTCAGC TCAT GCTGGCAGTATT TCTTAAAAAATAAAC TERM 125 81967 - 81944 - f 79 -9.6 -3.70689 | opp_overlap 81944, overlap 81942 TAGAATCGTAAAACA TACTGTCAGC TCAT GCTGGCAGTA TTTCTTAAAAAATAA TERM 126 81944 - 81967 + F 95 -11.8 -4.16016 | opp_overlap 81944 81942 TAGAATCGTAAAACA TACTGTCAGC TCAT GCTGGCAGTA TTTCTTAAAAAATAA TERM 127 82920 - 82910 - g 78 -5.4 -4.98255 | TTGGAACGACAAAAA TCCA ATA TGGA GAACATGAAGTAGAT lysS 82006 - 83490 + | Lysyl-tRNA synthetase (class II) TERM 128 83507 - 83533 + F 95 -11.6 -5.06414 | opp_overlap 83501 TGCAGGGAAGCTTAA CTGGGTGAGGTA CTT TTCCTCACTCAG TTTTTCTTAAAAAAA TERM 129 83924 - 83909 - f 72 -9 -3.32343 | overlap 83920 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 130 85033 - 85021 - f 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGAGGAGCCAA TERM 131 85395 - 85363 - f 74 -4.8 -4.68384 | gap 1, overlap 85366 85375 85394 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 132 85487 - 85464 - f 76 -4.5 -5.07523 | gap 1 TAGACATAAAGAAAA GCGGAGGCGA CTGTT TAGCC-CCGC TAGACATAACGTAAT TERM 133 85531 - 85547 + F 82 -8.7 -4.23486 | overlap 85528 85532 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 134 85532 - 85546 + F 75 -10 -3.13007 | overlap 85531 85528 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 135 85950 - 85931 - f 89 -12.2 -3.66803 | opp_overlap 85930 85929 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 136 86987 - 86969 - f 71 -6 -4.21194 | overlap 86973 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 137 87483 - 87470 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 138 88799 - 88776 - f 93 -11.1 -5.06414 | opp_overlap 88776 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTTGGTC TTTTTGTTTTATATG TERM 139 88776 - 88799 + F 100 -11.1 -5.58522 | opp_overlap 88776 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTTGGTC TTTTTGTTTTATATG ctsR 88936 - 89397 + | Transcriptional repressor of class III stress genes, CtsR mcsA 89403 - 89954 + | Modulator of heat shock repressor CtsR, McsA TERM 140 90090 - 90073 - gf 80 -3.5 -5.34055 | gap 1, opp_overlap 90073 90076, overlap 90075 90076 AGAAATATGAAAAAA TATCCGTT CCC AACGG-TA TTTACAAATGAAGAA mcsB 89902 - 91023 + | Tyrosine kinase McSB, modulator of heat shock repressor CtsR TERM 141 91200 - 91188 - g 72 -6.2 -4.28361 | GGAATTGCAGCAAAA GCGC TTATG GCGC TCGGATTAGGGCCAG TERM 142 91625 - 91609 - g 75 -5.9 -4.62392 | GAAGAAGTAAAGAAA TTCAACG CGT CATTGAA GTGTTAAGCCGTAGA clpC 91035 - 93476 + | Class III stress response-related ATPase, ClpC TERM 143 93513 - 93478 - f 83 -12.1 -3.17461 | opp_overlap 93483, overlap 93483 AGACAGTAAAATAAC GAAAACAAGGTATGC TTACAT GCATACCTTGTTTTT CATCATGAAAGGAAT TERM 144 93508 - 93483 - f 100 -12 -4.67123 | opp_overlap 93483, overlap 93478 GTAAAATAACGAAAA CAAGGTATGC TTACAT GCATACCTTG TTTTTCATCATGAAA TERM 145 93483 - 93508 + F 100 -12 -4.77036 | opp_overlap 93483 93478 GTAAAATAACGAAAA CAAGGTATGC TTACAT GCATACCTTG TTTTTCATCATGAAA radA 93535 - 94929 + | ATP-dependent serine protease, RadA Aflv_0079 94980 - 96107 + | Integral membrane protein containing PIN domain TERM 146 96526 - 96500 - g 73 -3.6 -4.91657 | opp_overlap 96506, overlap 96502 AAGCAACAAAAGAAA CGGGAGCAGC AGTGTTA GCTGTTCCTG TCAAAGATACGATGA TERM 147 96585 - 96572 - g 71 -2.3 -5.1287 | opp_overlap 96573, overlap 96573 GTCATATTGAAAAAA CGGTC GATC GATCG AGCTTGTGGGCTGTC ispD 96091 - 96813 + | 4-diphosphocytidyl-2-methyl-D-erithritol synthase TERM 148 97132 - 97121 - g 73 -5.8 -4.41206 | AATTATTGCACAAAA GCCA AAAA TGGC TCCATATATTCCAAA ispF 96810 - 97295 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 149 97749 - 97728 - g 71 -4.3 -4.87665 | gap 1, opp_overlap 97738 CGTGAGGCACAAAAA GCGGCG-GGC ATT GCGGCACCGC AATATAGTGGCAAAT gltX 97359 - 98819 + | Glutamyl-tRNA synthetase TERM 150 99099 - 99070 - f 80 -10.8 -3.3482 | opp_overlap 99071, overlap 99071 99097 GAACCGCGCAACCAA GCGTCTCTGTGT CATTGT ACACAGAGACGT TTTTTATTTGAAAAA TERM 151 99071 - 99098 + F 100 -14.3 -5.63517 | opp_overlap 99071 99070 99097 AACCGCGCAACCAAG CGTCTCTGTGT CATTGT ACACAGAGACG TTTTTTATTTGAAAA TERM 152 99098 - 99071 - f 93 -14.3 -2.60571 | opp_overlap 99071, overlap 99070 99097 AACCGCGCAACCAAG CGTCTCTGTGT CATTGT ACACAGAGACG TTTTTTATTTGAAAA TERM 153 99292 - 99316 + G 82 -5.7 -5.04987 | ATTTTATTTTTTAGC GCGCCTCATTT CGC AAATTAGTCGC TTTTTTACGGGTATT cysE 99107 - 99799 + | Serine acetyltransferase TERM 154 100119 - 100104 - g 86 -6.8 -5.00616 | CTCGGTTGCAAAAAA GCGGAC GTCC ATCCGC GTGTCACCGAAAACA cysS 99780 - 101177 + | Cysteinyl-tRNA synthetase TERM 155 101216 - 101204 - g 71 -4.9 -4.63486 | ATTTGTTTAACAAAA TGAAA GAT TTTCA GCAGTTAAACGGTTT TERM 156 101248 - 101284 + G 100 -14 -3.36492 | gap 2 ACGTTAGCCTACATT GGTGATGCCGTATACGAA TTA TTCGTA--CGGCATCACC TTCTGACCTTAGGAA TERM 157 101458 - 101443 - g 74 -6.8 -4.27316 | GGTCGTAATGCAAAA TCAGGG AGTA CCCCGA AAAATACAGATGTAC Aflv_0085 101182 - 101607 + | Ribonuclease III family protein yacO 101607 - 102347 + | rRNA methylase yacP 102340 - 102858 + | PIN domain containing protein sigH 102905 - 103576 + | RNA polymerase sigma-30 factor, sigH rpmGB 103640 - 103789 + | Ribosomal protein L33 secE 103821 - 104003 + | Preprotein translocase subunit SecE TERM 158 104052 - 104063 + F 93 -7.2 -5.48213 | opp_overlap 104052 104051 AAACAAGAAATAAAG CCCG GTAA CGGG TTTTTATTTTGCCTA nusG 104123 - 104656 + | Transcription antiterminator NusG rplK 104739 - 105233 + | Ribosomal protein L11 TERM 159 105253 - 105286 + F 77 -8.2 -4.24342 | opp_overlap 105253 GATCTGGCTGGAGAA GGTTGCGGAAGCGA ACTATA TAGTTTTCGCAACC TTTATTCGTGGGAGG rplA 105337 - 106038 + | Ribosomal protein L1 TERM 160 106185 - 106173 - f 75 -7.7 -4.10188 | opp_overlap 106173 GAGACTCATAAATAA GTGCA TCT TGCAC TTTTCGGGGGCCTCC TERM 161 106173 - 106185 + F 75 -7.7 -4.08216 | opp_overlap 106173 GAGACTCATAAATAA GTGCA TCT TGCAC TTTTCGGGGGCCTCC TERM 162 106196 - 106221 + F 100 -13.4 -5.26875 | TGCACTTTTCGGGGG CCTCCATGTC TGCGTT GACATGGAGG TTTTTTGATTGAACG TERM 163 106349 - 106365 + G 76 -9.5 -3.49924 | opp_overlap 106349 106353, overlap 106350 106353 CTTCGCGCGAGCAAA TCAACGA TCA TCGTTGA TTATCGTGGTTTAAA TERM 164 106365 - 106349 - g 78 -9.5 -3.72576 | opp_overlap 106349 106350 106353, overlap 106353 CTTCGCGCGAGCAAA TCAACGA TCA TCGTTGA TTATCGTGGTTTAAA rplJ 106226 - 106780 + | Ribosomal protein L10 rplL 106826 - 107191 + | Ribosomal protein L7/L12 TERM 165 107204 - 107223 + F 95 -6.4 -5.69068 | gap 1, opp_overlap 107204 TAATGATATAAAAAA GCTCGCTCA AAG TG-GCGGGC TTTTTTGTGTTTTTA TERM 166 107223 - 107204 - f 82 -4.2 -5.42131 | gap 1, opp_overlap 107204 TAATGATATAAAAAA GCTCGCTCA AAG TG-GCGGGC TTTTTTGTGTTTTTA rsmC 107270 - 107878 + | 16S RNA G1207 methylase RsmC TERM 167 108011 - 108031 + F 72 -3.4 -5.16969 | gap 1, opp_overlap 108025, overlap 108025 AATAGGTCAAACATG TGGTTTTCT TATA AGAAA-CCA TTTCTTTTTTGTCTG TERM 168 108025 - 108035 + F 82 -4 -5.39721 | opp_overlap 108025, overlap 108011 GTGGTTTTCTTATAA GAAA CCA TTTC TTTTTTGTCTGATGA TERM 169 110846 - 110834 - g 91 -7.7 -4.8667 | TACATTGTACAAAAA CGGAA AAT TTCCG AAGGTGACAAAATGG TERM 170 110871 - 110859 - g 70 -5.5 -4.42788 | CCGAAGGTGACAAAA TGGCA GGA CGCCA TGGAAATAAAGGGGT rpoB 108077 - 111646 + | DNA-directed RNA polymerase beta subunit TERM 171 111966 - 111954 - g 76 -7.7 -4.08767 | GTTACGCGTGCAAAA GTTCG TCG CGAAC GCATGGGTCATATTG TERM 172 112176 - 112160 - g 72 -7.9 -3.80746 | overlap 112158 TTCTGAAAAAGAATA TCGCGCG TAT CGCGAGA AGTACGGAAATTCAT TERM 173 112362 - 112374 + G 79 -7.7 -4.35581 | opp_overlap 112361 AACTCCGGTAACGAC CCATC TTG GATGG TTTTAGATGTTTTAC TERM 174 114947 - 114927 - g 71 -6.7 -4.10453 | CAAATGCTTCGAAAA GTGCGCGTC ATT GACGCGGGC GATACAGACTTGTTG rpoC 111696 - 115295 + | DNA-directed RNA polymerase beta' subunit Aflv_0099 115421 - 115669 + | Ribosomal protein HS6-type TERM 175 115675 - 115698 + F 90 -9 -4.89063 | opp_overlap 115675 115674, overlap 115667 115692 TATTCGTTAAAAACT GTTTTTGTGG GTTA CTACAAAAAC TTTGTTTTTGCATAA rpsL 115729 - 116193 + | Ribosomal protein S12 rpsG 116238 - 116708 + | Ribosomal protein S7 fusA 116843 - 118921 + | Translation elongation factor G, EF-G TERM 176 118962 - 119003 + F 73 -8.7 -3.74975 | opp_overlap 118962 118964, overlap 118963 118977 TAAATACTTATGTAA GACTTGGAAGTGGACGTGC CTGT GCACTTTCACTTCCGAGCA TTCTATATTCTATAC TERM 177 118963 - 119002 + F 81 -12.2 -2.84262 | opp_overlap 118962 118964, overlap 118962 118977 AAATACTTATGTAAG ACTTGGAAGTGGACGTGC CTGT GCACTTTCACTTCCGAGC ATTCTATATTCTATA TERM 178 119001 - 118964 - f 82 -11.3 -3.10622 | opp_overlap 118963 118962 118977, overlap 118962 AATACTTATGTAAGA CTTGGAAGTGGACGTGC CTGT GCACTTTCACTTCCGAG CATTCTATATTCTAT tufA 119051 - 120238 + | Translation elongation factor Tu, EF-Tu TERM 179 120244 - 120274 + F 100 -12.7 -5.13741 | opp_overlap 120228 120247, overlap 120247 CATCGAGTAATCGAT AAAGTGGTCTAGC TTGCT GCTAGACCACTTA TTTTTGTTCCATTGA TERM 180 120271 - 120247 - f 100 -14.4 -3.98826 | opp_overlap 120244 120247 CGAGTAATCGATAAA GTGGTCTAGC TTGCT GCTAGACCAC TTATTTTTGTTCCAT TERM 181 120247 - 120271 + F 100 -14.4 -4.64495 | opp_overlap 120247, overlap 120244 CGAGTAATCGATAAA GTGGTCTAGC TTGCT GCTAGACCAC TTATTTTTGTTCCAT rpsJ 120474 - 120821 + | Ribosomal protein S10 rplC 120845 - 121471 + | Ribosomal protein L3 rplD 121499 - 122122 + | Ribosomal protein L4 rplW 122122 - 122409 + | Ribosomal protein L23 TERM 182 123244 - 123228 - g 79 -3.1 -5.29445 | GCGTAAGAAGAAAAA TAAATCT GAT AAATTTA TCGTACGTCGTCGTA rplB 122431 - 123267 + | Ribosomal protein L2 TERM 183 123312 - 123265 - f 71 -4 -5.00616 | overlap 123268 CGTCGTCGTAAAAAA TAACGGGGTTGAGCTACGGTTC AAAA GAACCGTAGAGCAATCACGAAA GGAGGTTCACTTATG TERM 184 123309 - 123268 - f 91 -10.1 -4.61482 | overlap 123265 CGTCGTAAAAAATAA CGGGGTTGAGCTACGGTTC AAAA GAACCGTAGAGCAATCACG AAAGGAGGTTCACTT TERM 185 123496 - 123471 - g 71 -9.9 -2.6914 | gap 1, overlap 123470 CATCGGTCACACAAT CGCTGTTTACGA TGG TCGTAAACA-CG TTCCAGTTTACATCA rpsS 123325 - 123603 + | Ribosomal protein S19 rplV 123624 - 123965 + | Ribosomal protein L22 rpsC 123969 - 124625 + | Ribosomal protein S3 rplP 124628 - 125062 + | Ribosomal protein L16 rpmC 125037 - 125252 + | Ribosomal protein L29 rpsQ 125278 - 125541 + | Ribosomal protein S17 rplN 125590 - 125958 + | Ribosomal protein L14 TERM 186 126279 - 126265 - g 74 -4.2 -5.0538 | opp_overlap 126265, overlap 126266 GTTGACGGTAAAAAA GTTCGC TAT GCGAAA CGTTCTGGTGAAATT TERM 187 126278 - 126266 - g 70 -7.7 -3.62746 | opp_overlap 126265, overlap 126265 TTGACGGTAAAAAAG TTCGC TAT GCGAA ACGTTCTGGTGAAAT rplX 125995 - 126306 + | Ribosomal protein L24 rplE 126336 - 126875 + | Ribosomal protein L5 rpsN 126910 - 127095 + | Ribosomal protein S14 rpsH 127129 - 127527 + | Ribosomal protein S8 rplF 127557 - 128096 + | Ribosomal protein L6 rplR 128111 - 128491 + | Ribosomal protein L18 rpsE 128511 - 129011 + | Ribosomal protein S5 rpmD 129023 - 129214 + | Ribosomal protein L30 TERM 188 129361 - 129345 - g 70 -5.8 -4.26792 | gap 1 ACACAAAGGGCAAAA CGCTCGC TCTG GCG-GCG GCGTACGCATCGGCT rplO 129229 - 129669 + | Ribosomal protein L15 TERM 189 130525 - 130535 + G 73 -5.4 -4.62336 | TTATTACTCCACCGA CGAT TGC ATCG TTTTTCGGCTCGAAT secY 129669 - 130961 + | Preprotein translocase subunit SecY TERM 190 130995 - 130965 - f 89 -6.8 -5.33405 | TTTATTAAATAAAAA GAGGTGTTGGGAAT TTT ATTCCCTCTACCTC ATACAGAGCTGAGGG TERM 191 131180 - 131192 + G 70 -7.7 -3.63515 | GCGAAGTCGTACATG GATCG TGG CGATC TTGTTCCAGATGAAG adk 131018 - 131671 + | Adenylate kinase map 131671 - 132417 + | Methionine aminopeptidase TERM 192 132514 - 132499 - f 72 -3.2 -5.05782 | ACTCATTTCAAAAAA GAAGGG AGAG CCGTTC AATGGCGAAAGACGA infA 132516 - 132734 + | Translation initiation factor 1 (IF-1) rpmJ 132765 - 132878 + | Ribosomal protein L36 rpsM 132901 - 133266 + | Ribosomal protein S13 rpsK 133292 - 133681 + | Ribosomal protein S11 rpoA 133850 - 134794 + | DNA-directed RNA polymerase alpha subunit TERM 193 134788 - 134817 + F 74 -6.5 -4.4261 | opp_overlap 134786 134788 134791 AAGCTTACGTAAAGA TGACTAGTTAAGC GTTT GGTTAACTAGGCA TTTTCATGTTAAAAG rplQ 134855 - 135217 + | Ribosomal protein L17 TERM 194 135886 - 135859 - gf 71 -2 -5.09426 | opp_overlap 135871, overlap 135864 CCGAATGGCAAAAAA GAAGTGCTTCAA GTGA TCCAATCACTTC GTTGCGAACACGATA Aflv_0134 135331 - 136185 + | ABC-type cobalt transport system, ATPase component Aflv_0135 136143 - 137012 + | ABC-type cobalt transport system, ATPase component Aflv_0136 137009 - 137806 + | ABC-type cobalt transport system, permease component TERM 195 137929 - 137888 - g 70 -7.4 -3.78904 | gap 1, opp_overlap 137893, overlap 137893 TACCAAATTCAACAA CAAAAGCGAACGGTACAAG GAGAG CTTG-AGCGTGCGCTTTCG ATCATTCATAAGGGG TERM 196 137924 - 137893 - g 73 -3.7 -4.91987 | gap 1, opp_overlap 137893, overlap 137888 AATTCAACAACAAAA GCGAACGGTACAAG GAGAG CTTG-AGCGTGCGC TTTCGATCATTCATA TERM 197 138195 - 138184 - g 74 -4.4 -5.02502 | GATAGGAGAGAAAAA CGTA TTTT TACG CCATTACGTCTATCA truA 137822 - 138562 + | Pseudouridylate synthase I TERM 198 139139 - 139117 - g 82 -5.7 -4.99861 | gap 1, opp_overlap 139124, overlap 139120 CATCAAGCACAAAAA CCA-GAAGTT TACG AACTTCGTGG ATAATTGATTAAAGG rplM 138709 - 139143 + | Ribosomal protein L13 rpsI 139166 - 139558 + | Ribosomal protein S9 TERM 199 139588 - 139567 - f 100 -13.1 -4.74504 | opp_overlap 139567 ACGTTAATTCAAAAA TCTCGGCAA TTGT TTGCCGAGA TTTTTTTGTATGTTC TERM 200 139567 - 139588 + F 100 -13.1 -5.80248 | opp_overlap 139567 ACGTTAATTCAAAAA TCTCGGCAA TTGT TTGCCGAGA TTTTTTTGTATGTTC ybaK 139598 - 140050 + | hypothetical protein TERM 201 140660 - 140647 - g 74 -4.5 -4.76041 | overlap 140648 TATATTTATTAAAAA CGGCT AAAA AGCCA GGGGCTTTAGTTGAA cwlD 140106 - 140804 + | N-acetylmuramoyl-L-alanine amidase TERM 202 140789 - 140814 + F 93 -5.6 -5.60993 | gap 1, opp_overlap 140788, overlap 140792 CGTATCAAATGAACG TG-ATCCTTCT GAGTG AGAAGGATTCA TTTTTTTATGCAGAA TERM 203 140792 - 140810 + F 73 -7.5 -4.08806 | opp_overlap 140788, overlap 140789 ATCAAATGAACGTGA TCCTTCT GAGTG AGAAGGA TTCATTTTTTTATGC TERM 204 141098 - 141085 - g 76 -8.1 -4.14392 | opp_overlap 141085, overlap 141087 GTGCAACGTTTAAAA GACGC AGGA GCGTC TTCTGTCGGGCTTCG mrp 140884 - 141891 + | Mrp protein, an ATPase involved in chromosome partitioning TERM 205 141889 - 141910 + T 80 -11.6 -2.9003 | opp_overlap 141886, overlap 141887 141884 ATTGCGAAATTACGG TGAGGGGC TTAGTC GCCCCTCA TGCTGTTTGATCTTC gerD 142510 - 141908 - | Spore germination protein GerD kbaA 142636 - 143232 + | Integral membrane protein, activator of sporulation histidine kinase KinB TERM 206 143221 - 143265 + T 90 -8.8 -4.9725 | opp_overlap 143230 143235, overlap 143226 143230 143235 ACATTGCATCGACTT TTGCGGAAATAAAATGAGGC TTGCT GCCTCATTTTATTTCTTTAC TTTTTATATGAGCGT TERM 207 143226 - 143260 + T 100 -17.5 -4.40526 | opp_overlap 143230 143235, overlap 143221 143230 143235 GCATCGACTTTTGCG GAAATAAAATGAGGC TTGCT GCCTCATTTTATTTC TTTACTTTTTATATG TERM 208 143256 - 143230 - T 90 -12.5 -3.53444 | opp_overlap 143226 143221 143230 143235, overlap 143235 CGACTTTTGCGGAAA TAAAATGAGGC TTGCT GCCTCATTTTA TTTCTTTACTTTTTA TERM 209 143230 - 143256 + T 100 -12.5 -4.71307 | opp_overlap 143230 143235, overlap 143226 143221 143235 CGACTTTTGCGGAAA TAAAATGAGGC TTGCT GCCTCATTTTA TTTCTTTACTTTTTA TERM 210 143235 - 143251 + T 91 -8 -5.20222 | opp_overlap 143230 143235, overlap 143230 143226 143221 TTTGCGGAAATAAAA TGAGGC TTGCT GCCTCA TTTTATTTCTTTACT TERM 211 143251 - 143235 - T 86 -8 -4.86731 | opp_overlap 143235 143230 143226 143221, overlap 143230 TTTGCGGAAATAAAA TGAGGC TTGCT GCCTCA TTTTATTTCTTTACT Aflv_0145 144010 - 143249 - | Predicted xylanase/chitin deacetylase TERM 212 143567 - 143593 + g 75 -3.1 -5.15969 | overlap 143568 GCGTAGGAAAGGGGT ATGTTTAATGC CTAAC GTATTAAACAC TTTTTTAGCTTGAGC TERM 213 143828 - 143843 + g 82 -3.3 -5.46706 | ACTAATATCAAATGT CAATG CGAGCT CATTG TTTTTATTTTCGACT TERM 214 144443 - 144428 - H 72 -9 -3.32343 | overlap 144439 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 215 145553 - 145541 - H 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 216 145915 - 145883 - H 74 -4.8 -4.68384 | gap 1, overlap 145886 145895 145914 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 217 146170 - 146186 + H 82 -8.7 -4.23486 | overlap 146167 146171 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 218 146171 - 146185 + H 75 -10 -3.13007 | overlap 146170 146167 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 219 146590 - 146571 - H 89 -12.2 -3.66803 | opp_overlap 146570 146569 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 220 147627 - 147609 - H 71 -6 -4.21194 | overlap 147613 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 221 148123 - 148110 - H 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 222 149305 - 149271 - H 70 -7.7 -3.72453 | gap 1, opp_overlap 149272, overlap 149264 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGGTTCGAGG TERM 223 149428 - 149413 - H 70 -9 -3.1506 | AAAGCTTTTGACGAA GACGTG TGTG CACGTC GAACGGAAAAAGCGC TERM 224 150654 - 150634 - H 75 -9.7 -3.31263 | overlap 150636 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAGT TERM 225 150652 - 150636 - H 79 -10.9 -3.22475 | overlap 150634 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 226 150768 - 150786 + H 100 -11.8 -5.90231 | opp_overlap 150768 GGCTCCATACGAAAA CCTTAGGT ATT ACCTAAGG TTTTTTTCTGTTTGT TERM 227 150786 - 150768 - H 95 -11.8 -4.34402 | opp_overlap 150768 GGCTCCATACGAAAA CCTTAGGT ATT ACCTAAGG TTTTTTTCTGTTTGT TERM 228 151065 - 151043 - g 72 -7.6 -3.74792 | TAGGAGATATTCAAA TTGGTCGCGC TGA GCGCGTTCAA GATGTGACAAATCCA TERM 229 151750 - 151736 - g 75 -5.6 -4.66318 | opp_overlap 151736 151741 ATGAGCGCAATAAAA CAGCTG CAA CCGCTG TCGCTTTAATGGGAT rocF 150895 - 151791 + | Arginase TERM 230 151789 - 151816 + F 100 -13.6 -6.60575 | gap 1, opp_overlap 151794, overlap 151792 GGTGAGAAGCTTGTA TG-AGAGGTGGCA TGA TGCCACCTCTTCA TTTTTTTTTTTAAAT TERM 231 151792 - 151812 + F 100 -15.5 -4.28844 | opp_overlap 151794, overlap 151789 GAGAAGCTTGTATGA GAGGTGGCA TGA TGCCACCTC TTCATTTTTTTTTTT TERM 232 151810 - 151794 - f 83 -12.3 -2.79133 | opp_overlap 151792 151789 GAAGCTTGTATGAGA GGTGGCA TGA TGCCACC TCTTCATTTTTTTTT sigW 151917 - 152480 + | DNA-directed RNA polymerase specialized sigma subunit rsiW 152491 - 153114 + | Membrane-anchored regulator of SigW (anti-sigma factor) TERM 233 153114 - 153131 + F 85 -7 -5.1287 | opp_overlap 153112 153114 AACATTAACGAAATA GCCATC CATATT GATGGC TTTTTTACATGTGAG Aflv_0149 153124 - 153999 + | hypothetical protein TERM 234 154967 - 154950 - g 73 -8.5 -3.70836 | overlap 154948 AACAAGAAAAAGAGA GAACGTT TTAT AACGTTC CAATTGAAATCATTG Aflv_0150 153992 - 155224 + | hypothetical protein TERM 235 156091 - 156077 - g 76 -7.8 -4.07678 | overlap 156058 GCTTAAAACATCAAA CGGTCG TCT CAACCG TCATGAGCAACCTCG TERM 236 156130 - 156118 - g 78 -9.1 -3.85698 | CTCGGCTTTTATAAA GCGCT TGA AGCGC AAGGAATCAAAAGCG TERM 237 156167 - 156152 - g 77 -8.2 -3.97406 | opp_overlap 156152, overlap 156143 TCAAAAGCGTACAAA CGGCCG TTGG CGACCG TTATGTCGTCGAAGA Aflv_0151 155242 - 156585 + | Phosphomannomutase TERM 238 156644 - 156602 - f 72 -8.7 -3.55761 | opp_overlap 156605, overlap 156605 156607 156615 CATGTATTCGGTAAA CGATATGCATAAATGGAAC GGTTT ATTCCATTTATGCATATTT TGTTTACACAGGGGT TERM 239 156641 - 156605 - f 95 -14.8 -2.91144 | opp_overlap 156605, overlap 156602 156607 156615 GTATTCGGTAAACGA TATGCATAAATGGAAC GGTTT ATTCCATTTATGCATA TTTTGTTTACACAGG TERM 240 156605 - 156641 + F 100 -14.1 -4.86731 | opp_overlap 156602 156605 156607 156615 GTATTCGGTAAACGA TATGCATAAATGGAA CGGTTTA TTCCATTTATGCATA TTTTGTTTACACAGG TERM 241 156639 - 156607 - f 91 -13 -3.00704 | opp_overlap 156605, overlap 156605 156602 156615 ATTCGGTAAACGATA TGCATAAATGGAAC GGTTT ATTCCATTTATGCA TATTTTGTTTACACA TERM 242 156832 - 156860 + F 76 -7.4 -4.20367 | GTGTTCGGCGGATGC CTCCCGGCTG ATGCGATGA CAGCCGCGAG TTCTTTCTTAAAACA TERM 243 156891 - 156874 - f 79 -8.5 -4.07687 | AGTTCTTTCTTAAAA CAAAGAG GCGA CTCTTTG CACAAAGGAAAGAAC TERM 244 156957 - 156933 - f 82 -11.5 -3.15292 | opp_overlap 156933 156933 156954 ACAAATATTATCCAA GGGGCAAGA GCCCCTT TCTTGCCCC TATCATTAGGGAGGA TERM 245 156933 - 156946 + F 89 -9.5 -4.17556 | opp_overlap 156933, overlap 156933 ACAAATATTATCCAA GGGGC AAGA GCCCC TTTCTTGCCCCTATC TERM 246 156933 - 156957 + F 81 -12.2 -2.90075 | opp_overlap 156933, overlap 156933 156954 ACAAATATTATCCAA GGGGCAAGAG CCCCT TTCTTGCCCC TATCATTAGGGAGGA TERM 247 157408 - 157423 + G 73 -5.4 -4.67038 | opp_overlap 157408 157421, overlap 157402 157421 TTAACGGTAGAAGAA GCGTTT CGTA AGACGC TTTTGCTTTTGAAAG TERM 248 157521 - 157505 - g 75 -2.1 -5.26119 | overlap 157500 157506 CGGCGAAAAACAAAA GCCCGCT TTT AGCTGGA TTAGGCGAAGGGTTT glmS 156979 - 158781 + | L-glutamine-D-fructose-6-phosphate amidotransferase TERM 249 158797 - 158837 + T 91 -6.3 -5.44198 | gap 2, opp_overlap 158797 AGCTTAGAAGAAAAA CCACACGCCACTGATTACG ATGTA TGTAATC-G-GACGTGTGG TTTTTATTATTTCTT TERM 250 158837 - 158797 - T 91 -7.8 -5.19328 | gap 2, opp_overlap 158797 AGCTTAGAAGAAAAA CCACACGCCACTGATTAC GATGTAT GTAATC-G-GACGTGTGG TTTTTATTATTTCTT Aflv_0153 159961 - 159266 - | Uncharacterized transmembrane protein Aflv_0154 160177 - 160737 + | Transposase Aflv_0155 160719 - 161237 + | Transposase Aflv_0156 162979 - 162461 - | Transposase Aflv_0157 163545 - 162991 - | Transposase TERM 251 163795 - 163773 - R 100 -16.4 -5.66229 | ACCAATAATAAAAAA GCTTGTCGAC TTT GTCGACAAGC TGAAGATTCACAGAT Aflv_0158 164435 - 163824 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase Aflv_0159 166582 - 165113 - | Transposase IS66 family TERM 252 166645 - 166613 - H 100 -8.6 -5.72053 | gap 1, opp_overlap 166613 CAAGGAAAGAAAAAA CTATTCAGCTCACTT TATG ATGTG-GCTGAATAG TTACTACCATTTTAA TERM 253 166835 - 166851 + H 77 -8.1 -4.29738 | AAGTTAAAGCCTAGG TCCTTTT AAA AAAAGGA TTTTACTAGGTCTAG TERM 254 167171 - 167190 + H 73 -6.6 -4.20106 | opp_overlap 167170 167164 167171 TATAAATATCAAAAT TTATGTAT GTTT ATACATAA TTTTAAGTAAGGTTT acpS 167235 - 167588 + | Holo-acyl carrier protein synthase:Phosphopantethiene-protein transferase TERM 255 168258 - 168248 - f 82 -4 -5.47159 | GGGAAGAAATAAAAA TTTC CTC GAAA TAGAACAAGCCGGAA TERM 256 169349 - 169331 - f 90 -7.4 -5.18866 | opp_overlap 169334 169335 TGTAAATAAACAAAA GAAGGGGA TTC TCCCTTTC TACACATAAAACTGA TERM 257 169790 - 169831 + F 77 -9.5 -3.48288 | opp_overlap 169800, overlap 169792 169794 169800 GTGTCTTTTCAATGG TTTTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTATG TTGTGGTGTAAATTA TERM 258 169792 - 169829 + F 100 -14.3 -3.30918 | opp_overlap 169800, overlap 169790 169794 169800 GTCTTTTCAATGGTT TTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTA TGTTGTGGTGTAAAT TERM 259 169794 - 169827 + F 100 -16.9 -3.2178 | opp_overlap 169800, overlap 169792 169790 169800 CTTTTCAATGGTTTT CTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAG TATGTTGTGGTGTAA TERM 260 169800 - 169821 + F 73 -8.7 -3.77846 | opp_overlap 169800, overlap 169794 169792 169790 AATGGTTTTCTGAAA GTGGCTGGC AGAT GTCAGCTAC TTTCAGTATGTTGTG Aflv_0161 170092 - 170736 + | Cell wall-associated Rhs family protein precursor Aflv_0162 170751 - 171035 + | hypothetical protein TERM 261 171087 - 171061 - f 90 -9.5 -4.39426 | opp_overlap 171061 TATATTGTTACAAAA GCCTTAGGAGA TAAAT TCTCTTAAGGC TTTTTACATGGAGGA TERM 262 171061 - 171087 + F 95 -11.7 -4.65895 | opp_overlap 171061 TATATTGTTACAAAA GCCTTAGGAGA TAAAT TCTCTTAAGGC TTTTTACATGGAGGA TERM 263 171750 - 171772 + G 100 -13.6 -5.60556 | opp_overlap 171750 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTATT TERM 264 171772 - 171750 - g 100 -13.6 -4.59109 | opp_overlap 171750 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTATT TERM 265 172474 - 172486 + G 80 -4.8 -5.1166 | overlap 172471 CTATCTGTAAAGCAT GACC CTCGT GGTC TTTTTGCTTTTCATG Aflv_0163 171742 - 173187 + | Transposase TERM 266 173235 - 173201 - f 95 -8.8 -5.51078 | opp_overlap 173209, overlap 173203 AAAACAAAAAGAAAA GAGAAAAAGTTCAC GGGAGAT GTGAACTTTTTCTT GACGTCTCACTTTTT TERM 267 173233 - 173203 - f 93 -11.4 -4.3115 | opp_overlap 173209, overlap 173201 AACAAAAAGAAAAGA GAAAAAGTTCAC GGGAGAT GTGAACTTTTTC TTGACGTCTCACTTT TERM 268 173209 - 173227 + F 79 -5.3 -5.09204 | opp_overlap 173203 173201 AAGAAAAGAGAAAAA GTTCACG GGAGA TGTGAAC TTTTTCTTGACGTCT TERM 269 173367 - 173396 + F 100 -12.3 -5.25803 | opp_overlap 173367 173374, overlap 173374 TTGTTTAACGGAAGA TTGAAAACGGGGC AATC GCTCCGTTTTTAA TTTTTTATAGGCGTT TERM 270 173374 - 173389 + F 91 -8.2 -5.27769 | opp_overlap 173374 173367, overlap 173367 ACGGAAGATTGAAAA CGGGGC AATC GCTCCG TTTTTAATTTTTTAT TERM 271 173389 - 173374 - f 71 -6 -4.28656 | opp_overlap 173367 173374, overlap 173367 ACGGAAGATTGAAAA CGGGGC AATC GCTCCG TTTTTAATTTTTTAT Aflv_0164 173533 - 175209 + | Predicted transcriptional regulator containing an HTH domain and diverged ATP-binding domain (Schlafen-like) TERM 272 175387 - 175361 - f 80 -10.2 -3.67296 | opp_overlap 175361 TAGGATTTAGTTAAA GACATCGGTTCA ATT TAAACCGGTGTC TTTTTAATATTTACC TERM 273 175361 - 175387 + F 93 -10.2 -4.93696 | opp_overlap 175361 TAGGATTTAGTTAAA GACATCGGTTCA ATT TAAACCGGTGTC TTTTTAATATTTACC TERM 274 175802 - 175859 + F 100 -16 -3.77157 | gap 2, opp_overlap 175805, overlap 175807 ATATATCAATTTTAA TTAT-TA-CCCGTGGTGCTAGTTGAGCG CTAA CGCTCAACTAGCACCACAGACTATATAA TATCTTTTTTCTTCC TERM 275 175854 - 175805 - f 100 -23.1 -2.75957 | opp_overlap 175802 175807 TATCAATTTTAATTA TTACCCGTGGTGCTAGTTGAGCG CTAA CGCTCAACTAGCACCACAGACTA TATAATATCTTTTTT TERM 276 175807 - 175852 + F 100 -19.1 -3.02677 | opp_overlap 175805, overlap 175802 TCAATTTTAATTATT ACCCGTGGTGCTAGTTGAGCG CTAA CGCTCAACTAGCACCACAGAC TATATAATATCTTTT TERM 277 176129 - 176170 + F 75 -9.5 -3.3452 | opp_overlap 176139, overlap 176131 176133 176139 GTGTCTTTTCAATGG TTTTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTATG TTGTGGGCTAATGTC TERM 278 176131 - 176168 + F 95 -14.3 -3.23869 | opp_overlap 176139, overlap 176129 176133 176139 GTCTTTTCAATGGTT TTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTA TGTTGTGGGCTAATG TERM 279 176133 - 176166 + F 100 -16.9 -3.18118 | opp_overlap 176139, overlap 176131 176129 176139 CTTTTCAATGGTTTT CTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAG TATGTTGTGGGCTAA TERM 280 176139 - 176160 + F 73 -8.7 -3.77846 | opp_overlap 176139, overlap 176133 176131 176129 AATGGTTTTCTGAAA GTGGCTGGC AGAT GTCAGCTAC TTTCAGTATGTTGTG TERM 281 176607 - 176643 + G 72 -9.5 -3.10597 | opp_overlap 176612 176617, overlap 176606 CAATTTGGAAGTTTA ACTGACGGAAGCAAG CTCTTGT CTTGCTTCCGTCACA CTTTTCCGTGACAAA TERM 282 176638 - 176612 - g 86 -12.4 -2.55074 | opp_overlap 176607 176606, overlap 176617 TGGAAGTTTAACTGA CGGAAGCAAG CTCTTGT CTTGCTTCCG TCACACTTTTCCGTG Aflv_0165 176376 - 176654 + | Transposase TERM 283 176825 - 176849 + F 91 -13.1 -3.17723 | opp_overlap 176827, overlap 176813 TATCATTTTTTTTAA GATGTATATAC TAT GTATATACATC TTAAGTTAAGGGTGA TERM 284 176847 - 176827 - f 72 -9.9 -3.02144 | opp_overlap 176813 176825 TCATTTTTTTTAAGA TGTATATAC TAT GTATATACA TCTTAAGTTAAGGGT mazE 176869 - 177177 + | Toxin-antiotoxin addiction module antitoxin component MazE mazF 177177 - 177563 + | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse) TERM 285 178158 - 178134 - f 79 -5.7 -4.89852 | opp_overlap 178134 TGATACCCACAAAAA GAGCCGC TTTGTTTTATG GCGGCTC TTTGTTATGAAGGGA TERM 286 178134 - 178158 + F 82 -8.5 -4.30719 | opp_overlap 178134 TGATACCCACAAAAA GAGCCGCTTTG TTT TATGGCGGCTC TTTGTTATGAAGGGA TERM 287 178300 - 178285 - f 70 -3.2 -4.93296 | TCATCATTATAAAAA TACGCC TTGA GTCGTA GTTGAAAATATAGCT TERM 288 178520 - 178510 - gf 73 -8.2 -3.5771 | opp_overlap 178510 178509 AAAAAGTTTTTCAAA GCCG ATT CGGC GTTTGGCAAAATCGT Aflv_0168 178336 - 178728 + | hypothetical protein pspA 178701 - 179366 + | Phage shock protein A TERM 289 180055 - 180037 - g 87 -5.2 -5.5112 | opp_overlap 180040, overlap 180040 TGGATCAACAAAAAA CGACCGAC TAC GTCAGTTG GGTAGTATTGCTTGC TERM 290 180085 - 180098 + G 71 -2.3 -5.14563 | CGCTCATGATTTTGG CGCTA GAAA TTGCG TTTTTTCATCCAGGC Aflv_0170 179970 - 180746 + | Predicted membrane protein yvqE 180743 - 181750 + | Signal transduction histidine kinase TERM 291 182193 - 182172 - g 70 -9.5 -2.7961 | overlap 182169 AAATGATGAATAGTA TGAGAAAGC CGTC GCTTCCTCA TGAACAACTAACGAG yvqC 181763 - 182389 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 292 182391 - 182409 + F 93 -2.3 -6.28401 | overlap 182392 GGTTGGTCAAATAAC GCTCGCT TTTAT GGCGAGA TTTTTTTATTTTTTC TERM 293 182392 - 182408 + F 70 -5.8 -4.3155 | overlap 182391 GTTGGTCAAATAACG CTCGCT TTTAT GGCGAG ATTTTTTTATTTTTT TERM 294 182431 - 182449 + F 91 -11.8 -3.97834 | TATTTTTTCGCTTTA CATTGACG TTA CGTCAATG TTTATAGTGAAATTG mta 182447 - 183241 + | Transcriptional regulator (MerR family) TERM 295 183260 - 183239 - f 76 -4.3 -5.14477 | opp_overlap 183241 183259, overlap 183241 TATACAGGTAAAAAA TAGGCAGGC AGCA GCCTGTCTT TTTACATTGTAAAAG TERM 296 183241 - 183258 + F 89 -9.1 -4.78149 | opp_overlap 183239 183241 TACAGGTAAAAAATA GGCAGGC AGCA GCCTGTC TTTTTACATTGTAAA TERM 297 183258 - 183241 - f 73 -6.9 -4.19215 | opp_overlap 183241, overlap 183239 TACAGGTAAAAAATA GGCAGGC AGCA GCCTGTC TTTTTACATTGTAAA TERM 298 183723 - 183711 - g 77 -6.3 -4.64657 | TTAAAGCCGCAAAAA CTTCA AAT TGAAG GAGCAGAAAAGTTTG TERM 299 183908 - 183944 + G 71 -4.5 -4.67353 | AAAAGGACATGAGGC GCAAGTGACGCAATTAT TAA ATAGTTCTGCCATTTGC TTTTTCCATACGTCC Aflv_0174 183324 - 184379 + | Thioredoxin reductase TERM 300 184433 - 184394 - f 84 -10.2 -3.86524 | opp_overlap 184384 184397 ATAGCCGTGTATAAA CTCGTTTGTTTTAACACA AACT TTCGGTAAAACAAACGAG GTGAATATTTTGCTC TERM 301 184714 - 184703 - g 74 -4.4 -4.93365 | opp_overlap 184703, overlap 184697 GGCGATAAGCAAAAA GGAA GGAT TTCC TTATCGATTGCATGC Aflv_0175 184434 - 185147 + | hypothetical protein TERM 302 185162 - 185131 - T 76 -6.6 -4.39166 | opp_overlap 185135, overlap 185135 GCCCACATATGAAAA CGAAGCTAGCGC GATAAACT GCGCTAGCTTTA TTTCACTTATTGGTG TERM 303 185158 - 185135 - T 79 -9.6 -3.74461 | opp_overlap 185135, overlap 185131 ACATATGAAAACGAA GCTAGCGC GATAAACT GCGCTAGC TTTATTTCACTTATT TERM 304 185135 - 185158 + T 91 -10.3 -4.52669 | opp_overlap 185135 185131 ACATATGAAAACGAA GCTAGCGCG ATAAAC TGCGCTAGC TTTATTTCACTTATT TERM 305 185179 - 185192 + T 76 -2.4 -5.43514 | TTCACTTATTGGTGA GAAG AAATGA CTTC TTTTTTCGTTGTTTT cstA 186788 - 185169 - | Carbon starvation membrane protein TERM 306 185990 - 185977 - G 70 -3.8 -4.91109 | TTTTCATGATAAAAA CCTG TAAACG CAGG GAACTGAATAGTCGG Aflv_0177 187360 - 186785 - | hypothetical protein TERM 307 187090 - 187100 + g 82 -3.2 -5.44119 | TGACGTCTCTTTTTG TGAC GAT GTCG TTTTTTTGCCATACA TERM 308 187130 - 187120 - G 74 -4 -4.96848 | opp_overlap 187120 TTTGCCATACAAAAA TGAA CTG TTCA TTTTCCACTGCCCAA Aflv_0178 187464 - 188099 + | Transcriptional regulator, TetR/AcrR family TERM 309 188536 - 188525 - g 95 -5.8 -5.74684 | GAACAAAAAGAAAAA TGGC TCGT GCCA ATGGCAAAAGGAGAG Aflv_0179 188198 - 189340 + | Acyl-CoA dehydrogenase TERM 310 190644 - 190633 - gf 76 -7.2 -4.30978 | CGTAATGGATGAAAA CGGC TACT GCCG CATTACAGGAAGATT Aflv_0180 189353 - 190993 + | Acyl-CoA synthetase/AMP-acid ligase II TERM 311 191374 - 191416 + GF 81 -10.7 -3.25223 | gap 1, opp_overlap 191383, overlap 191383 GCGCGACAAACGATG GCGGAAGCAGGGGTGCCG ATTGTGCC CGGCATCTCT-TTTCCGC TTGCTGATGTCGATG TERM 312 191383 - 191408 + GF 71 -6.1 -4.20696 | opp_overlap 191383, overlap 191374 ACGATGGCGGAAGCA GGGGTGCCG ATTGTGCC CGGCATCTC TTTTCCGCTTGCTGA TERM 313 191721 - 191739 + GF 81 -7.4 -4.56597 | CCATCAAAAAGTTGT CGAAGAAG CTC CTTCTCCG TTTTTAGACGAAGAG Aflv_0181 190954 - 192366 + | Biotin carboxylase Aflv_0182 192359 - 192571 + | Biotin carboxyl carrier protein Aflv_0183 192582 - 193472 + | Hydroxymethylglutaryl-CoA lyase Aflv_0184 193469 - 194254 + | Enoyl-CoA hydratase TERM 314 195643 - 195613 - g 74 -7.6 -4.02817 | TTGCCAGAAGAAGAA CGTGCCGCTTTTAT TGA ACAAAAGCGGGAAG AATATCGGAAAGACA Aflv_0185 194260 - 195807 + | Acetyl-CoA carboxylase, carboxyltransferase component TERM 315 195854 - 195833 - f 72 -10.2 -2.60257 | opp_overlap 195833, overlap 195830 ATATGGTACAATGGA GGCGATGT GTGCTA ACATCGCC TTTTTTTCGGGAAAT TERM 316 195833 - 195854 + F 100 -10.2 -5.40474 | opp_overlap 195833 195830 ATATGGTACAATGGA GGCGATGT GTGCTA ACATCGCC TTTTTTTCGGGAAAT Aflv_0186 195984 - 196652 + | Polysaccharide deacetylase Aflv_0187 196667 - 197248 + | Uncharacterized membrane-associated protein, DedA family TERM 317 197562 - 197547 - g 95 -3.3 -6.07627 | opp_overlap 197524, overlap 197548 ATTTTGAAAAAAAAA TGAAG CGCCTT CTTCA AGAAAAAAAACCGCA TERM 318 198329 - 198315 - g 74 -4.2 -5.03314 | opp_overlap 198317, overlap 198316 198317 TCGAGCGTGAAAAAA GCGC GCAAGAG GCGC TTTACGAATGGATTG Aflv_0188 197264 - 198376 + | UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase TERM 319 198365 - 198393 + T 100 -8.9 -5.58209 | opp_overlap 198370, overlap 198367 198370 AATGTATACGCAATG AAAAAGCGATGAG CTG CTCATCGCTTCTA TTTTTTTGACTTTCC TERM 320 198367 - 198391 + T 93 -11.5 -4.41528 | opp_overlap 198370, overlap 198365 198370 TGTATACGCAATGAA AAAGCGATGAG CTG CTCATCGCTTC TATTTTTTTGACTTT TERM 321 198388 - 198370 - T 100 -13.2 -4.89009 | opp_overlap 198367 198365 198370 ATACGCAATGAAAAA GCGATGAG CTG CTCATCGC TTCTATTTTTTTGAC TERM 322 198370 - 198388 + T 100 -13.2 -4.2757 | opp_overlap 198370, overlap 198367 198365 ATACGCAATGAAAAA GCGATGAG CTG CTCATCGC TTCTATTTTTTTGAC gerKC 199521 - 198391 - | Spore germination protein GerKC TERM 323 198784 - 198798 + g 70 -3.5 -4.77165 | CTTCATGTAAATTGG GGTGC GCCCG GTACC TTTTGTTATCCAGCG TERM 324 199029 - 199019 - G 73 -5.4 -4.63218 | TTCGGTTGAATAAAA GAAC TTT GTTC ATAAATATCGGTCGG TERM 325 199533 - 199545 + r 70 -3.3 -4.88293 | overlap 199526 TCATGATTCGTCACC CGGCG TAT TGTCG TTTGTTTTTAGCATT gerKA 201080 - 199518 - | Spore germination protein GerKA TERM 326 199707 - 199695 - GR 84 -2.7 -5.59534 | AACGAGAAGAAAAAA CATTG ATG CAATA AAACCGAACAGCCCG TERM 327 200883 - 200867 - GR 70 -5.1 -4.42237 | opp_overlap 200865 200867 AATAAATGAAAATAA GCGATAA TGG TTTTCGC TCTTCTGAATAAATG gerKB 202096 - 200978 - | Spore germination protein GerKB ddl 202182 - 203249 + | D-alanyl-D-alanine ligase murF 203259 - 204635 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase TERM 328 204742 - 204717 - f 79 -9.7 -3.69338 | opp_overlap 204717 AATGAATTTCAACAA GGCACTTCCGT CTAT ACGGGAATGCC TTTTTTCGTAAGTTA TERM 329 204717 - 204742 + F 100 -9.7 -5.18357 | opp_overlap 204717 AATGAATTTCAACAA GGCACTTCCGT CTAT ACGGGAATGCC TTTTTTCGTAAGTTA TERM 330 205303 - 205318 + G 74 -4 -5.00616 | gap 1, opp_overlap 205305, overlap 205305 AGCCATGTGCCAACA G-AGCGT CAA ACGCTTC TTTTTTCAGCGACGA TERM 331 205305 - 205315 + G 79 -6.8 -4.61482 | opp_overlap 205305, overlap 205303 CCATGTGCCAACAGA GCGT CAA ACGC TTCTTTTTTCAGCGA Aflv_0194 204772 - 206187 + | ATP-dependent RNA helicase TERM 332 206187 - 206210 + F 100 -10.4 -5.27335 | opp_overlap 206185 206190 GCGCACAAAGCGATA GAAGCTGTCT GGAA AGATAGCTTC TTTTTCTTTACAGGA TERM 333 206490 - 206477 - g 82 -2.3 -5.65927 | opp_overlap 206484 TATTGAAATAAAAAA TGACG AAAA CGGCA AGCCGTATATTATTT acpS 206235 - 206597 + | Phosphopantetheinyl transferase (holo-ACP synthase) TERM 334 207516 - 207491 - g 77 -3.9 -5.18726 | overlap 207492 CTTGTACAAGAAAAA GCGCATGCTGT ACCG ACAGCAAACGT ATCGACAACTGTTAA Aflv_0196 206672 - 207691 + | hypothetical protein TERM 335 207689 - 207712 + F 100 -9 -6.09888 | gap 1, opp_overlap 207692, overlap 207692 GGGAAGGTTATGAAG TAA-GACTCGC GCG GCGAGTCTTTA TTTTTTTTGTTGACA TERM 336 207708 - 207692 - f 87 -12.3 -3.40639 | opp_overlap 207689 207692 AAGGTTATGAAGTAA GACTCGC GCG GCGAGTC TTTATTTTTTTTGTT TERM 337 207692 - 207708 + F 100 -12.3 -5.42458 | opp_overlap 207692, overlap 207689 AAGGTTATGAAGTAA GACTCGC GCG GCGAGTC TTTATTTTTTTTGTT TERM 338 208537 - 208522 - g 83 -9 -4.09685 | CCTTATCCGTTAAAA GAAGCG TTTT CGCTTC ACAGTCGCTTAACGC alr 207787 - 208944 + | D-alanine racemase Aflv_0198 209091 - 209378 + | Transcriptional regulator, CopG family mazF 209383 - 209733 + | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse) TERM 339 209765 - 209747 - f 81 -7.5 -4.59511 | opp_overlap 209747 AATATGCTGGAAAAA TAGCTAC GTTGT GTAGCTA TTTTTGTTTAGGGGA TERM 340 209747 - 209765 + F 91 -8.2 -5.27335 | opp_overlap 209747 AATATGCTGGAAAAA TAGCTACG TTG TGTAGCTA TTTTTGTTTAGGGGA Aflv_0200 209755 - 211956 + | Transcriptional accessory protein Tex, contains RNAse H and S1 domains TERM 341 211974 - 211934 - T 83 -12.1 -3.17688 | opp_overlap 211944, overlap 211925 211936 211944 CAATGATTCCACCAA CATTGGAAAACACACTG TCATGAG CAGTGTGTTTTCCGATA AAAAAACCAACATTG TERM 342 211972 - 211936 - T 85 -12.5 -3.1478 | opp_overlap 211944, overlap 211925 211934 211944 ATGATTCCACCAACA TTGGAAAACACACTG TCATGAG CAGTGTGTTTTCCGA TAAAAAAACCAACAT TERM 343 211944 - 211964 + T 73 -7.6 -4.13767 | opp_overlap 211936 211934 211944 ACCAACATTGGAAAA CACACTGT CATGA GCAGTGTG TTTTCCGATAAAAAA TERM 344 211964 - 211944 - T 73 -6.9 -4.20042 | opp_overlap 211944, overlap 211936 211934 ACCAACATTGGAAAA CACACTG TCATGAG CAGTGTG TTTTCCGATAAAAAA Aflv_0201 212064 - 211951 - | hypothetical protein Aflv_0202 212136 - 212591 + | Zn-dependent metalloprotease, SprT family TERM 345 212989 - 213013 + F 85 -7.1 -4.86731 | GTACGGGTCATCGTT TGGAGTGCTCA TTT TGTTCACTCCA TTTTATTTCGGAGGA TERM 346 213457 - 213473 + F 72 -4.4 -4.79223 | gap 1 TTCAAGTCCCTCCAC CCGCACC AGTC GGT-CGG TTTTTAATGATATGC TERM 347 214116 - 214101 - f 72 -9 -3.32343 | overlap 214112 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 348 215226 - 215214 - f 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 349 215710 - 215726 + F 82 -8.7 -4.23486 | overlap 215707 215711 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 350 215711 - 215725 + F 75 -10 -3.13007 | overlap 215710 215707 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 351 216129 - 216110 - f 89 -12.2 -3.66803 | opp_overlap 216109 216108 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 352 217166 - 217148 - f 71 -6 -4.21194 | overlap 217152 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 353 217662 - 217649 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 354 218844 - 218810 - f 70 -7.7 -3.72453 | gap 1, opp_overlap 218811, overlap 218803 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGGTTCGAGG TERM 355 218968 - 218953 - f 70 -9 -3.1506 | AAAGCTTTTGACGAA GACGTG TGTG CACGTC GAACGGAAAAAGCGC TERM 356 219587 - 219608 + F 85 -8.8 -4.35708 | overlap 219599 ATATGTGTAGCATTT CCTTAGGA GAGTGA TCCTAAGG TCTTTTTTGTATGTT TERM 357 219599 - 219610 + F 76 -2.2 -5.47431 | overlap 219587 TTTCCTTAGGAGAGT GATC CTAA GGTC TTTTTTGTATGTTGA Aflv_0203 219651 - 220124 + | ATP/GTP binding protein TERM 358 220222 - 220206 - gf 100 -5.1 -5.81032 | GAATTTGAAAAAAAA TCATTCG ATC CGAGTGA TGCCTGCCATTGAAT Aflv_0204 220087 - 220809 + | Glycoprotease family enzyme Aflv_0205 220810 - 221253 + | Acetyltransferase gcp 221238 - 222263 + | ATP-binding apurinic endonuclease TERM 359 222261 - 222302 + T 70 -9.7 -2.64595 | gap 1, opp_overlap 222270, overlap 222270 CCAAGTTTACTGTTA TAGCAAGAAGGTGTCCCA AAAGCAA TGGGGCACCTTTTT-CTA ATTGTCATACGAATT TERM 360 222270 - 222294 + T 90 -9.3 -5.01535 | opp_overlap 222270, overlap 222261 CTGTTATAGCAAGAA GGTGTCCCA AAAGCAA TGGGGCACC TTTTTCTAATTGTCA TERM 361 222525 - 222553 + T 76 -6.7 -4.36508 | opp_overlap 222525 222523 222526 222528, overlap 222522 222526 TCTTTGTGTAAAAGA TGAGCTAGCCC ACAAATA GAGCTAGCTCG TTATTATTTTTGTAA TERM 362 222552 - 222526 - T 73 -10.2 -2.78032 | opp_overlap 222525 222522 222526, overlap 222525 222523 222528 CTTTGTGTAAAAGAT GAGCTAGCCC ACAAATA GAGCTAGCTC GTTATTATTTTTGTA Aflv_0207 224452 - 222557 - | ATPase component of an ABC transporter with duplicated ATPase domains TERM 363 223099 - 223111 + g 74 -4.7 -4.83169 | overlap 223095 TCATGAGTTTAGCGA GAGCG AGT CGCGC TTTTTCTCCACCGCT TERM 364 224772 - 224754 - g 78 -7.4 -4.56597 | overlap 224755 TCGTTTTTTGAAAAA CTTGCATG CAT CAGGCAAG CAACGTGTATCTTCA Aflv_0208 224680 - 225315 + | AT-rich DNA-binding protein TERM 365 225316 - 225339 + T 90 -8.8 -5.08824 | opp_overlap 225312 225317, overlap 225317 TACGGAAATGAGTAA ACCTCCCGTT TACG AGCGGGAGGC TTTTTTCCATAAAGA TERM 366 225317 - 225338 + T 90 -12.3 -3.64812 | opp_overlap 225312 225317, overlap 225316 ACGGAAATGAGTAAA CCTCCCGTT TACG AGCGGGAGG CTTTTTTCCATAAAG TERM 367 225338 - 225317 - T 84 -10.1 -3.89412 | opp_overlap 225317 225316, overlap 225312 ACGGAAATGAGTAAA CCTCCCGTT TACG AGCGGGAGG CTTTTTTCCATAAAG Aflv_0209 225513 - 225325 - | hypothetical protein Aflv_0210 226232 - 225495 - | Predicted metal-dependent membrane protease TERM 368 225774 - 225756 - G 80 -4.7 -5.18726 | GGCTGATAAGAAAAA GTTATAT TTTTG ATATAAC GTTCCGAAAATAATT groES 226458 - 226742 + | Chaperonin GroES (HSP10 family) TERM 369 227993 - 227981 - g 72 -7.7 -3.87807 | AACAGAATTAAAAGA GCGTA AAT TACGC ATTGAAGACGCATTA groEL 226815 - 228431 + | Chaperonin GroEL (HSP60 family) TERM 370 228475 - 228505 + F 93 -10.5 -4.9725 | TATATTCAATCGTAA GGGCTACTTCCTT ATAAA AAGGGGGTAGTCC TTTTTGTGTGAAAAT TERM 371 228797 - 228820 + F 95 -4.5 -5.82172 | overlap 228798 ACCTCACATTTCGCA CCCTCTCGA CAAAAA TCGGGAGGA TTTTTTTATCTTCAT TERM 372 228798 - 228819 + F 75 -8 -4.06863 | overlap 228797 CCTCACATTTCGCAC CCTCTCGA CAAAAA TCGGGAGG ATTTTTTTATCTTCA TERM 373 229266 - 229286 + G 70 -7.6 -3.61654 | opp_overlap 229275 TTCGGGTGTTCCATG CCGATACG ACCGA TGTATCGG TTTACGGTACGTATG Aflv_0213 228884 - 229540 + | Transposase Aflv_0214 230206 - 229883 - | Transposase bls 231770 - 230244 - | Carboxyethyl-arginine beta-lactam-synthase (Beta-lactam synthetase) argJ 233003 - 231804 - | N-acetylglutamate synthase (N-acetylornithine aminotransferase) Aflv_0217 234109 - 233030 - | Predicted carboxylase (ATP-grasp family) TERM 374 234032 - 234044 + g 93 -4.1 -5.88471 | opp_overlap 234033, overlap 234033 TGAGAAAGTTAGTAA TCCAT GAA ATGGG TTTTTTTTCATAATA speB 234634 - 235575 + | Arginase TERM 375 235632 - 235662 + F 91 -6.3 -5.48054 | gap 1, opp_overlap 235634 AAAATTCTGTGTAAC TATTCAGC-CACAT GATC AAGTGAGCTGAATA TTTTTTGCTTTTCCT Aflv_0219 235709 - 237166 + | Transposase TERM 376 237461 - 237445 - gf 78 -2.2 -5.44119 | overlap 237455 TGCACTCCAAAAAAA CCGC ATGATATTA GCGG AGTACGCAAAAGAAT Aflv_0220 237103 - 238083 + | Carboxyethyl arginine synthase (C-terminal TPP binding domain) TERM 377 238102 - 238092 - f 81 -2.6 -5.5604 | opp_overlap 238092 TGAATGAAGAAAAAA TTAT TAA ATAA CTTTTTAGGTTTTAG TERM 378 238124 - 238146 + F 76 -7 -4.43681 | opp_overlap 238126, overlap 238126 AGGTTTTAGGTAGTT AAGGAGGAGA TAT TTTCCTCCTC TTTTCGTATTAAATA TERM 379 238126 - 238144 + F 83 -9.6 -3.81853 | opp_overlap 238126, overlap 238124 GTTTTAGGTAGTTAA GGAGGAGA TAT TTTCCTCC TCTTTTCGTATTAAA TERM 380 238407 - 238397 - g 71 -4 -4.81212 | CTTATCATAATAAAA TTCT GAA AGAA GTACGTTACGGAGAT Aflv_0221 238249 - 239487 + | Alanine-anticapsin ligase bacD related protein TERM 381 240475 - 240500 + G 71 -3.3 -4.99947 | gap 1 AGTAATATATCCCCA CCTGGATTAGCT GGA AGCTAC-CTAGG TTTTGTTTCCTTAGG Aflv_0222 239494 - 240711 + | Permease of the major facilitator superfamily, mdtH subfamily Aflv_0223 240895 - 241350 + | Acetyltransferase (GNAT family) TERM 382 241380 - 241410 + T 95 -6.3 -5.61913 | gap 1, opp_overlap 241382 TTCTATTCTCGTAAC TATTCAGC-CACAT CATA AAGTGAGCTGAATA TTTTTTGTATTTCTT Aflv_0224 241936 - 241505 - | hypothetical protein TERM 383 242269 - 242306 + H 100 -13.6 -5.60993 | opp_overlap 242273 TAAATGACCCGACTA CGAAGGCAGTGTTCTA TATTGC TAGAATTCTGCCTTCG TTTTTTTATGAGAGG TERM 384 243649 - 243638 - g 84 -3.6 -5.46129 | opp_overlap 243640, overlap 243639 243640 GAAGAAATTAAAAAA GCCG GTCT CGAC CGTGATATTTGGCAA guaA 242369 - 243904 + | GMP synthetase TERM 385 244087 - 244111 + G 79 -10.8 -3.23734 | overlap 244085 ATGTGTAATGTGGGG GAGAGGAATC TGCTT GGTTCCTCTC TATGTTCTGTGCATT TERM 386 244141 - 244165 + G 100 -11.5 -5.65496 | TATGCATCATAGTCA CGCTTCTGGTA GTT TGCTAGAAGCG TTTTTCTTTTTACTA pbuG 244079 - 245530 + | Xanthine/uracil/vitamin C permease TERM 387 245548 - 245605 + T 90 -12.4 -3.58522 | gap 2, opp_overlap 245554 245556 245557 245571, overlap 245550 245557 ACCGTAGTTATGGAT GATGAAGAGGGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCCTTTTTCATG TTTAAAAATGCTGAT TERM 388 245550 - 245603 + T 100 -15 -3.36991 | gap 2, opp_overlap 245554 245556 245557 245571, overlap 245548 245557 CGTAGTTATGGATGA TGAAGAGGGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCCTTTTTCA TGTTTAAAAATGCTG TERM 389 245596 - 245557 - T 70 -9.5 -2.50195 | gap 2, opp_overlap 245550 245548 245557, overlap 245556 245554 245571 ATGGATGATGAAGAG GGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCC TTTTTCATGTTTAAA TERM 390 245557 - 245596 + T 100 -11.7 -4.93696 | gap 2, opp_overlap 245557 245556 245554 245571, overlap 245550 245548 ATGGATGATGAAGAG GGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCC TTTTTCATGTTTAAA TERM 391 246069 - 246054 - T 72 -9 -3.32343 | overlap 246065 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 392 247179 - 247167 - T 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 393 247541 - 247509 - T 74 -4.8 -4.68384 | gap 1, overlap 247512 247521 247540 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 394 247633 - 247610 - T 76 -4.5 -5.07523 | gap 1 TAGACATAAAGAAAA GCGGAGGCGA CTGTT TAGCC-CCGC TAGACATAACGTAAT TERM 395 247677 - 247693 + T 82 -8.7 -4.23486 | overlap 247674 247678 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 396 247678 - 247692 + T 75 -10 -3.13007 | overlap 247677 247674 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 397 248096 - 248077 - T 89 -12.2 -3.66803 | opp_overlap 248076 248075 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 398 249133 - 249115 - T 71 -6 -4.21194 | overlap 249119 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 399 249629 - 249616 - T 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 400 250811 - 250777 - T 70 -7.7 -3.72453 | gap 1, opp_overlap 250778, overlap 250770 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGATTCGAGG TERM 401 250935 - 250920 - T 70 -9 -3.1506 | AAAGCTTTTGACGAA GACGTG TGTG CACGTC GAACGGAAAAAGCGC TERM 402 251201 - 251231 + T 85 -4.1 -5.65177 | overlap 251190 GGGCGGACATGGCAA GTTAGAGGGCA TCTCGACTT TGTTCTCTAAC TTTTTTTGTCCATGT TERM 403 251251 - 251261 + T 73 -6.8 -4.16279 | TTTGTCCATGTATTT GCGT TTA ACGC TTTTACAATCCTCTC TERM 404 251288 - 251313 + T 100 -10.5 -5.74086 | opp_overlap 251289, overlap 251289 TCTCCCCCATAGTGA AGAGCTAACCA ATGC TGGTTAGCTCA TTTTTTATTTAATTT TERM 405 251289 - 251312 + T 100 -14 -4.00791 | opp_overlap 251289, overlap 251288 CTCCCCCATAGTGAA GAGCTAACCA ATGC TGGTTAGCTC ATTTTTTATTTAATT TERM 406 251312 - 251289 - T 93 -14 -3.12351 | opp_overlap 251289 251288 CTCCCCCATAGTGAA GAGCTAACCA ATGC TGGTTAGCTC ATTTTTTATTTAATT Aflv_0227 251707 - 251318 - | Molecular chaperone (HSP20 family) TERM 407 251989 - 252033 + H 93 -5.9 -5.64274 | gap 1 TAGGGGCGAAATATG TCCAGAACGATG-CTTTC CCTTATGATC GAGGGACGTCGTTCTGGA TTTTTTTCTGAATGA purE 252068 - 252556 + | Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase purK 252540 - 253688 + | Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) purB 253661 - 254980 + | Adenylosuccinate lyase purC 255046 - 255768 + | Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase purS 255756 - 256010 + | Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component TERM 408 256390 - 256377 - g 71 -6.7 -4.20834 | opp_overlap 256357 256355 TCGAAAATAACGAAA CGATG TTTA CATCG CAATACGAGCAAGGA purQ 256007 - 256693 + | Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain TERM 409 256893 - 256874 - gf 77 -3.6 -5.14965 | ACCTGTATTAAAAAA GTTTCC GACTGAAG GGAAAC ATGTGCTCCAAGGAC TERM 410 257415 - 257397 - gf 71 -2.2 -5.10208 | CAATCTGAACAAAAA CGGCCAGC TGT GCAAGTCG GGGATCCATTTATGG purL 256677 - 258899 + | Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain purF 258818 - 260302 + | Glutamine phosphoribosylpyrophosphate amidotransferase purM 260265 - 261302 + | Phosphoribosylaminoimidazole synthetase purN 261299 - 261901 + | Phosphoribosylglycinamide formyltransferase purH 261879 - 263414 + | Inosine-monophosphate cyclohydrolase purD 263430 - 264710 + | Phosphoribosylglycinamide synthetase Aflv_0240 264777 - 264673 - | hypothetical protein TERM 411 264793 - 264816 + r 100 -15.4 -3.9461 | ACTTTTTCTCCTTTC CCCCCTTGTA TACG TACAAGGGGG TTATTGTTACGAAGG Aflv_0241 265092 - 264823 - | hypothetical protein TERM 412 265564 - 265539 - g 76 -10.7 -2.59431 | opp_overlap 265546, overlap 265535 265546 TTTTTTTACAATTGA CAAAAAAGAAA GCGT TTTCTTTTTTG TCTGAGATGGAAAAA TERM 413 265546 - 265557 + G 79 -3 -5.37043 | opp_overlap 265539 265535 265546 ACAATTGACAAAAAA GAAA GCGT TTTC TTTTTTGTCTGAGAT TERM 414 265557 - 265546 - g 79 -3 -5.3236 | opp_overlap 265546, overlap 265539 265535 ACAATTGACAAAAAA GAAA GCGT TTTC TTTTTTGTCTGAGAT TERM 415 266446 - 266470 + G 71 -4.2 -4.83593 | opp_overlap 266435 TACATCTGCTGATGA GCTATCAACG GATCA CGATGAAAGC TTTTTAATGCTTATT Aflv_0242 265145 - 266914 + | Adenine deaminase Aflv_0243 266949 - 267971 + | Predicted extracellular solute-binding protein, TRAP-type Aflv_0244 267964 - 268299 + | Trp repressor TERM 416 268308 - 268282 - f 71 -9.4 -2.74982 | opp_overlap 268282, overlap 268281 268279 268276 268284 AATGAACAACAAGAG GAGGCTGGCTCA CAA TGAGTCAGCTTC TTTTTACGATTTTTT TERM 417 268282 - 268308 + F 100 -13.8 -4.77925 | opp_overlap 268282 268281 268279 268276 268284 AATGAACAACAAGAG GAGGCTGGCTCA CAA TGAGTCAGCTTC TTTTTACGATTTTTT pcrB 268363 - 269058 + | Predicted phosphate-binding enzyme (TIM-barrel fold), PcrB TERM 418 269665 - 269649 - g 89 -7.3 -4.93316 | opp_overlap 269657, overlap 269650 CAAGAATATCAAAAA CGATTGC TGC GCAATCA TGCGCTTGATTTTGA TERM 419 269664 - 269650 - g 71 -8.6 -3.54363 | opp_overlap 269657, overlap 269649 AAGAATATCAAAAAC GATTGC TGC GCAATC ATGCGCTTGATTTTG TERM 420 269657 - 269670 + G 70 -8.1 -3.73345 | opp_overlap 269650 269649 TCAAAAACGATTGCT GCGCA ATCA TGCGC TTGATTTTGATGATT pcrA 269088 - 271268 + | ATP-dependent DNA helicase PcrA TERM 421 271465 - 271449 - g 86 -7.9 -4.74285 | opp_overlap 271461 ATCCACAATATAAAA CGCCGGA CTC TCCGTCG CAGCGCGTTGGTGGT TERM 422 272663 - 272636 - g 77 -4.8 -4.93296 | opp_overlap 272638 272641, overlap 272638 272640 GGACTAGGAGAAAAA GTCATTGCTCAA CTAT TTGAGCATCGTC TCGTTCGCAGCGTAG ligA 271274 - 273292 + | NAD-dependent DNA ligase TERM 423 274125 - 274114 - g 82 -3 -5.47399 | opp_overlap 274114 TGAAGCGGAAAAAAA TCAT CGCG ATGA TTTAGTGAAATTTTT Aflv_0248 273296 - 274429 + | Alkaline D-peptidase family extracellular enzyme TERM 424 274996 - 274972 - g 70 -5.6 -4.27584 | ATGTTGAAGTTAAAA GACGGCATTC CTGTT GAGAGCCGTC CAGGAGAAACAAATC rocA 274516 - 276063 + | Pyrroline-5 carboxylate dehydrogenase TERM 425 276072 - 276099 + F 100 -14.2 -3.64103 | opp_overlap 276072 GTTTTAATAGAAAAA CCCCTCTTGGCG AAAA TGCTAAGAGGGG TTTAAAGTATACATC TERM 426 276099 - 276072 - f 95 -11.3 -5.0916 | opp_overlap 276072 GTTTTAATAGAAAAA CCCCTCTTGGC GAAAAT GCTAAGAGGGG TTTAAAGTATACATC Aflv_0250 276150 - 276893 + | Minimal nucleotidyltransferase fused to substrate-bimding domain (HEPN domain) TERM 427 276965 - 276996 + T 75 -9.4 -3.30441 | gap 1, opp_overlap 276967 CTGGTTCACGCAGTA CACCC-GATGCGGCG CAA CACCTCATCCGGGTG TTGTAGAACGTACTG Aflv_0251 277386 - 276955 - | Transposase Aflv_0252 278014 - 277364 - | Transposase TERM 428 277439 - 277425 - G 72 -10 -2.87931 | CCCATGTCGTACACA GCGCTT GAT AAGCGC GAACATGTGTCCCAT TERM 429 278387 - 278375 - g 86 -3.3 -5.66989 | opp_overlap 278375, overlap 278364 GAAACACGAAAAAAA CGTGT GGG ACTCG TTATGTCTTCTGTTG Aflv_0253 278062 - 278403 + | Transposase Aflv_0254 278665 - 279912 + | Fibronectin type 3 domains containing extracellular protein Aflv_0255 279939 - 280244 + | Predicted membrane protein TERM 430 280338 - 280297 - T 89 -10.4 -4.18167 | gap 1, opp_overlap 280311, overlap 280302 AAAGAAGTATATAAA TCGAATTTCATAGAGAGGG AAATG CCCTCTCTATGAAAA-CAA CCGATTTCTCATTTT TERM 431 280334 - 280302 - T 100 -18 -3.36096 | opp_overlap 280311, overlap 280297 AGTATATAAATCGAA TTTCATAGAGAGGG AAATG CCCTCTCTATGAAA ACAACCGATTTCTCA Aflv_0256 280917 - 280327 - | hypothetical protein TERM 432 280788 - 280806 + g 79 -3.1 -5.29445 | overlap 280774 CTTCACGAATAGCTC GCTGTTC TTCGC GAATGGC TTTTTGTTCTTCACG adeC 282662 - 280950 - | Adenine deaminase TERM 433 282772 - 282782 + H 81 -2.6 -5.68023 | overlap 282777 AAATTATACGAGTTG TTTT TTG AAAA TTTTTTTCATTCTAC TERM 434 283004 - 283031 + H 80 -7.7 -4.34488 | opp_overlap 283003 283022 TCATAACAATAGCAG GGGTGTCCC AAAAATTAAC GGGGCACCC TTTGTTATACCTATA gatC 283213 - 283512 + | Glutamyl-tRNA(Gln) amidotransferase subunit C TERM 435 283660 - 283648 - g 72 -7.7 -3.77111 | overlap 283642 GACGAAAAAGTACAA GCGTT TTT AACGC TCAACGAAGAACAAG gatA 283525 - 284982 + | Glutamyl-tRNA(Gln) amidotransferase subunit A gatB 284994 - 286427 + | Glutamyl-tRNA(Gln) amidotransferase subunit B TERM 436 286460 - 286428 - T 70 -7.7 -3.69564 | opp_overlap 286427 286430, overlap 286422 286432 ATCAACAAACGATAA TCGATACCCCCATGT ATT ACATGGGGGTAAATA CTTTTGGCAATGCAA TERM 437 286430 - 286458 + T 75 -10.3 -3.09004 | opp_overlap 286428 286422 286432, overlap 286427 CAACAAACGATAATC GATACCCCCATGT ATT ACATGGGGGTAAA TACTTTTGGCAATGC TERM 438 286456 - 286432 - T 100 -17.3 -2.65206 | opp_overlap 286430 286427, overlap 286428 286422 ACAAACGATAATCGA TACCCCCATGT ATT ACATGGGGGTA AATACTTTTGGCAAT Aflv_0261 287013 - 286444 - | Endonuclease, Uma2 family (restriction endonuclease fold) TERM 439 286987 - 286998 + g 82 -2.2 -5.63517 | TGCGTAATCTGCATA TGTC CAAA GACG TTTTTTATTTGGCAA Aflv_0262 287953 - 288441 + | Nitroreductase family domain protein TERM 440 289142 - 289158 + G 79 -8 -4.24948 | GACAGTGGCGATGAT TACCGG AGGGG CCGGTA TTTTGAGTATACTAG azlC 288954 - 289649 + | Branched-chain amino acid permease (azaleucine resistance) TERM 441 289881 - 289892 + G 71 -3 -5.05782 | opp_overlap 289881 AGCTTTAACAATTAA GATT TCCA AATC TTTTTTACCATCCGT Aflv_0264 289657 - 289950 + | Predicted membrane protein TERM 442 289979 - 289999 + F 93 -12.7 -4.04318 | opp_overlap 289982, overlap 289982 TTTCTCTCGCAGGAG TAACCCTCT TAG AGAGGGTTA TTTGTCATGTCTAAA TERM 443 289996 - 289982 - f 75 -10 -3.21099 | opp_overlap 289982 289979 CTCTCGCAGGAGTAA CCCTCT TAG AGAGGG TTATTTGTCATGTCT TERM 444 289982 - 289996 + F 89 -10 -4.13973 | opp_overlap 289982, overlap 289979 CTCTCGCAGGAGTAA CCCTCT TAG AGAGGG TTATTTGTCATGTCT TERM 445 290913 - 290935 + F 84 -7.7 -4.80882 | opp_overlap 290911 290910 290913 GGCTGAATAAAATTA CCTCCCTTG ACTAC CAAGCGAGG TTTTTAGTCTAGAAT TERM 446 291669 - 291659 - f 81 -5.4 -5.02074 | CGATTTGCCAAAAAA CGAA GCC TTCG TCACGGGCCACGCAC TERM 447 291750 - 291783 + F 72 -8.9 -3.39955 | CTGGGGACATTCTCT CGTTTGGCTCATGGT TCAT ACGATGACCCAAGCG TTCCCTTTTGCCTTT Aflv_0265 292597 - 293031 + | SAM-dependent methyltransferase TERM 448 293700 - 293653 - T 80 -10.7 -3.30159 | gap 1, opp_overlap 293653 293653 293654, overlap 293654 TGAATCTTTTCACAA CTGTCGTCGACCCCC-AATGTT GCAAA AACCCCAGGGGATCGACGACAA GTTATTTTTGTGTTT TERM 449 293699 - 293654 - T 81 -12 -2.57881 | gap 1, opp_overlap 293653 293653 293654, overlap 293653 GAATCTTTTCACAAC TGTCGTCGACCCCC-AATGTT GCAAA AACCCCAGGGGATCGACGACA AGTTATTTTTGTGTT Aflv_0266 294309 - 293971 - | hypothetical protein TERM 450 294203 - 294213 + g 75 -5.4 -4.83615 | ACTTGTTGGCGTAAG GAAG ATA CTTC TTTTTCTAACGAATC TERM 451 294780 - 294765 - g 74 -4.6 -4.7629 | TGAGGAATTTAAAAA GAAGCG ATTT CGCTAC CAATGCAGCCCATAT TERM 452 294883 - 294869 - g 82 -5.6 -5.00616 | overlap 294870 GCTCGCTCGAAAAAA CGCGGT TTG ACCGCC TGTACGCATCGCTTG TERM 453 294882 - 294870 - g 75 -9.1 -3.60048 | overlap 294869 CTCGCTCGAAAAAAC GCGGT TTG ACCGC CTGTACGCATCGCTT TERM 454 295166 - 295184 + G 74 -6.6 -4.37092 | TGCTCGAAGATTTGC CGGCGGAC GGG GTACGTCG TTTTATCGAGGAAGT Aflv_0267 294463 - 295965 + | hypothetical protein Aflv_0268 295979 - 297145 + | hypothetical protein TERM 455 297316 - 297304 - gf 87 -4.7 -5.44119 | opp_overlap 297306, overlap 297305 297306 TGGACGGCAAAAAAA CGCCG GAC CGGCT CGACCCGTTCGGTTC TERM 456 297315 - 297305 - gf 75 -8.2 -3.85748 | opp_overlap 297306, overlap 297304 297306 GGACGGCAAAAAAAC GCCG GAC CGGC TCGACCCGTTCGGTT TERM 457 299583 - 299571 - gf 76 -3.3 -5.18355 | overlap 299574 299575 CGGAAAAACGAAAAA CTAGC GCA GCTTG CCCGCGATTGGCAAC TERM 458 299991 - 299975 - gf 70 -7.9 -3.70007 | overlap 299971 299978 ACCAGCGAAAATGAA CGAGCGC ATT GCGCTAG AACATGCACTAAAAA Aflv_0269 297132 - 301271 + | Predicted ATPase TERM 459 301288 - 301312 + G 82 -5.7 -5.02074 | opp_overlap 301273, overlap 301289 GCGGTACAATTTTTC CGCGGTGAA CGTTCGT TTCACCGCC TTTTTTGCGAAATGA TERM 460 301289 - 301311 + G 78 -9.2 -3.60762 | opp_overlap 301273, overlap 301288 CGGTACAATTTTTCC GCGGTGAA CGTTCGT TTCACCGC CTTTTTTGCGAAATG TERM 461 302088 - 302115 + G 90 -11.4 -3.61398 | AAGTGTTATCTTTGT CGTCGAAAATGC TGGC GTGTTTTCGACG TTATTAGAGGCGAAC TERM 462 302264 - 302252 - g 74 -4.7 -4.8269 | opp_overlap 302253, overlap 302253 CAGAAGGATTAAAAA TGGCG CAG CGCCT TGTCGACCGGTACGG TERM 463 302263 - 302253 - g 71 -8.2 -3.48529 | opp_overlap 302253, overlap 302252 AGAAGGATTAAAAAT GGCG CAG CGCC TTGTCGACCGGTACG Aflv_0270 301246 - 302490 + | DNA topoisomerase IV subunit A, contains TOPRIM domain Aflv_0271 302495 - 303844 + | NAD-dependent aldehyde dehydrogenase TERM 464 303974 - 304006 + F 100 -10.7 -6.23317 | opp_overlap 303972 303974 ATATAAAAAATTACA CTTTTCTCGCTCGTT TTT AAGGGGTGAGAAAAG TTTTTTTGTTTTTGT TERM 465 304130 - 304147 + F 76 -7.1 -4.14927 | opp_overlap 304130 ATAGTGTTAATACTA CAAAGTT AATA AACTTTG TTCTGTTTTATTTGT qoxA 304202 - 305176 + | Cytochrome aa3 quinol oxidase subunit II TERM 466 305494 - 305504 + GF 74 -4.6 -4.78764 | overlap 305502 TTATGATTTTGTTTA TGGC GAT GCCG TTTTTGATCGGTTTA TERM 467 305585 - 305597 + GF 74 -4.1 -5.00616 | GCAGTTGAACGCACT TAGCT TTT GGCTA TTTTTTAGCGGGGCG TERM 468 306474 - 306487 + GF 74 -5.3 -4.66537 | overlap 306464 306462 TTGTATTATTGGTGG CCAAA AATG TTTGG TTTTATGTTAAACGA TERM 469 306875 - 306858 - gf 78 -4.1 -5.21709 | gap 1, overlap 306859 TGGCATATGAAAAAA CGTG-GCG AAA CGCTCACA TTAAAAGGAAGCGAC qoxB 305145 - 307142 + | Cytochrome aa3 quinol oxidase subunit I qoxC 307132 - 307737 + | Cytochrome aa3 quinol oxidase subunit III qoxD 307738 - 308037 + | Cytochrome aa3 quinol oxidase subunit IV TERM 470 308060 - 308040 - f 76 -6.9 -4.34402 | opp_overlap 308040 TGCCGCACATTAAAA CAACTGG TTATACG CCAGTTG TTTTTGTATATACAT TERM 471 308040 - 308060 + F 86 -7.6 -5.04597 | opp_overlap 308040 TGCCGCACATTAAAA CAACTGGT TATAC GCCAGTTG TTTTTGTATATACAT Aflv_0276 308139 - 309647 + | Sensory protein with an HD-GYP output domain TERM 472 309645 - 309666 + GT 100 -8.8 -6.02914 | opp_overlap 309643 CAAGAAAAAGTGAGT TAGATGCC AACGAC GGCATCTA TTTTTTTTATGTAAG TERM 473 309864 - 309853 - gT 88 -3 -5.89921 | ACTACAAGAAAAAAA TGAA CAGC TTCA AAAGGAAAACGAACA Aflv_0277 309578 - 310408 + | hypothetical protein TERM 474 310449 - 310409 - T 88 -11.5 -3.56161 | gap 1, opp_overlap 310413 310420, overlap 310411 310413 310420 GAATGGACGACATAA CATATACAAAAGGTGTCC GGATAG GGACACCTTTTGTAT-TA CTCGCCTTTTAATTG TERM 475 310448 - 310411 - T 100 -14.4 -3.3517 | opp_overlap 310413 310420, overlap 310409 310413 310420 ATGGACGACATAACA TATACAAAAGGTGTCC GGATAG GGACACCTTTTGTATT ACTCGCCTTTTAATT TERM 476 310446 - 310413 - T 100 -17 -3.24076 | opp_overlap 310413 310420, overlap 310411 310409 310420 GGACGACATAACATA TACAAAAGGTGTCC GGATAG GGACACCTTTTGTA TTACTCGCCTTTTAA TERM 477 310413 - 310446 + T 100 -17 -3.21938 | opp_overlap 310411 310409 310413 310420, overlap 310420 GGACGACATAACATA TACAAAAGGTGTCC GGATAG GGACACCTTTTGTA TTACTCGCCTTTTAA TERM 478 310420 - 310439 + T 89 -9.3 -4.70583 | opp_overlap 310413 310411 310409 310420, overlap 310413 ATAACATATACAAAA GGTGTCC GGATAG GGACACC TTTTGTATTACTCGC TERM 479 310439 - 310420 - T 89 -9.3 -4.69028 | opp_overlap 310420 310413, overlap 310413 310411 310409 ATAACATATACAAAA GGTGTCC GGATAG GGACACC TTTTGTATTACTCGC pspA 311118 - 310447 - | Phage shock protein A TERM 480 310805 - 310834 + gT 100 -8 -5.61596 | gap 1 TAGGCGACTTTTTCT TGAAGGGCC-ATC TTTGC GATCGGCTCTTCA TTTTTTTCTACAGCT TERM 481 310897 - 310911 + gT 75 -2.8 -5.18726 | overlap 310899 TTCTTCTGCATCTGC GATGAG ACG CTCATA TTTTTGTTCTAGCAC Aflv_0279 311584 - 311081 - | hypothetical protein TERM 482 311657 - 311639 - R 100 -6 -6.20267 | opp_overlap 311639 TGAAAAATAAAAAAA CGTGCA ACATTTA TGCACG TTCATTCGGAAAAGT resE 313073 - 311649 - | Signal transduction histidine kinase TERM 483 312940 - 312925 - GR 81 -5.4 -5.08011 | opp_overlap 312925 312935 312937, overlap 312935 AAAATGGCTAAAAAA GCGATA AGAA TACCGC TATATGTGGTAGTTA Aflv_0281 313689 - 313009 - | DNA-binding response regulator, OmpR family (REC-wHTH domains) TERM 484 313095 - 313109 + gH 72 -6.4 -4.28548 | opp_overlap 313089, overlap 313078 TACGCAATAGCTTAA CGGTTG CGT CAATCG TTTTCATCGATACGT TERM 485 313461 - 313473 + gH 71 -4.8 -4.65747 | opp_overlap 313469 313472 ACATTAAAATCGCTC CGTG ATAAC CACG TTTTCTTAAACGTTG TERM 486 313757 - 313738 - H 70 -2.8 -5.13521 | overlap 313740 313743 313749 AAATGAGTGAAAAAA GATAAGGG AAAT CCCCTATG GGTATATAAGTTAAC TERM 487 313944 - 313926 - g 78 -2.4 -5.4505 | overlap 313928 TCTGTTAAGAAAAAA TCGTCAAT TAC ATGGACAA GTGTTGCTTATTGAT Aflv_0282 313840 - 315039 + | NAD(FAD)-dependent dehydrogenase Aflv_0283 315052 - 315576 + | hypothetical protein TERM 488 316605 - 316617 + G 70 -7.7 -3.57797 | overlap 316603 ATGTACAAACGATTC GCAAG GCG CTTGC TTATATCGGTTTAGA Aflv_0284 315578 - 317002 + | Zn-dependent hydrolase and Rhodanese-related sulfurtransferase TERM 489 317021 - 317003 - f 72 -8.8 -3.56727 | opp_overlap 317003 GTGAAGCAATCATAA GGGCTGAC GTT GTCAGTCC TTTCTTTTCATCTTA TERM 490 317003 - 317021 + F 93 -11 -4.77698 | opp_overlap 317003 GTGAAGCAATCATAA GGGCTGAC GTT GTCAGTCC TTTCTTTTCATCTTA TERM 491 317900 - 317877 - gf 77 -6.1 -4.50627 | gap 1, opp_overlap 317882 TATCGATTAAACAAA CAGA-ACGAG AATTA CTCGTGTCTG TTGAAGATAACGGCG Aflv_0285 317069 - 318088 + | Signal transduction histidine kinase yvqC 318060 - 318701 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 492 318758 - 318774 + G 70 -5.8 -4.37886 | TGTTCTTTTCCTTAT TGGGGC AATTG GCTCCA TTTTATCAGGGATGG Aflv_0287 318714 - 319505 + | Predicted permease TERM 493 319502 - 319529 + F 88 -8.4 -4.78572 | opp_overlap 319496, overlap 319506 GTATGAAATGCTCGT GTAAGCTGGCTC GTTT GAGTCGGCTTTC TTTTGTTCATTGCAA TERM 494 319506 - 319525 + F 86 -7.8 -4.91657 | opp_overlap 319496, overlap 319502 GAAATGCTCGTGTAA GCTGGCTC GTTT GAGTCGGC TTTCTTTTGTTCATT TERM 495 320553 - 320506 - g 100 -12.2 -5.27335 | opp_overlap 320506 320519 GTTCCGAAAGAAAAA GCCGAACAAATGAGAACAGG GGAATGAG CCTGTTCTTTTTTGTTCGAC TATGCTACAATCTTG TERM 496 320506 - 320553 + G 83 -12.2 -2.8092 | opp_overlap 320506, overlap 320519 GTTCCGAAAGAAAAA GCCGAACAAATGAGAACAGG GGAATGAG CCTGTTCTTTTTTGTTCGAC TATGCTACAATCTTG Aflv_0288 319597 - 320532 + | Diacylglycerol kinase family enzyme TERM 497 320519 - 320540 + F 89 -5.9 -5.46657 | opp_overlap 320506, overlap 320506 AAGCCGAACAAATGA GAACAGG GGAATGAG CCTGTTC TTTTTTGTTCGACTA TERM 498 321117 - 321099 - g 78 -7.5 -4.46854 | TGATCCAACAAGAAA TGAACGA TATTG TCGTTCA GACGGTCAAACAAAT Aflv_0289 320597 - 321967 + | Methyltransferase TERM 499 322004 - 321985 - f 86 -7.9 -4.92363 | opp_overlap 321985 AAATATCGATAAAAA GGAAAGG GCGTCT CCTTTCC TTTTTCATTTGTGGT TERM 500 321985 - 322004 + F 90 -8.6 -5.05505 | opp_overlap 321985 AAATATCGATAAAAA GGAAAGGG CGTC TCCTTTCC TTTTTCATTTGTGGT TERM 501 322613 - 322634 + G 90 -5.9 -5.57396 | gap 1 CGGCTTGAAGATCGG TGCT-TCGTC ATC GACGACGGCA TTTTTTGTTACTTCT Aflv_0290 322140 - 323351 + | Permease of the major facilitator superfamily TERM 502 323607 - 323593 - g 74 -10 -3.15999 | TTGGGACATATCGAA GAAGCG TAT CGCTTC AAACGGTGAAAGAGC Aflv_0291 323388 - 324596 + | Uncharacterized conserved two domain fusion protein TERM 503 324627 - 324593 - T 100 -13.1 -3.95621 | opp_overlap 324599, overlap 324584 324599 ATTAAAGCTTATAAA GTAAAAGCAGTCC GCTCGTCTA GGACTGCTTTTAC GTTGGGGTGGCGATA TERM 504 324621 - 324599 - T 77 -6.3 -4.61873 | opp_overlap 324599, overlap 324584 324593 GCTTATAAAGTAAAA GCAGTCC GCTCGTCTA GGACTGC TTTTACGTTGGGGTG TERM 505 324599 - 324621 + T 71 -6.3 -4.2803 | opp_overlap 324584 324599 324593 GCTTATAAAGTAAAA GCAGTCC GCTCGTCTA GGACTGC TTTTACGTTGGGGTG Aflv_0292 325401 - 324664 - | Signal transduction protein (PAS, MCP domains) TERM 506 325689 - 325653 - H 76 -11.1 -2.71268 | overlap 325650 325663 TGTTACTATATAGTA GTACTCAATATTATTGA ATA CCAACAAGATTGAGTAC GTAGGAGGTGTTTTT padR 325666 - 326043 + | Predicted transcriptional regulator, PadR family TERM 507 326334 - 326320 - g 82 -8.6 -4.29369 | overlap 326315 GAAAAAAGAATTAAA GTTTCG CAG CGAAAC GACAAAGTCAGCTGA Aflv_0294 326021 - 326608 + | hypothetical protein TERM 508 326898 - 326858 - f 82 -7.8 -4.49556 | opp_overlap 326860 326866, overlap 326860 326866 TTTGCACGAAACAAA CATGAAAAGACAGCGA GCGCATGAT TCGCTGTCTTTTTATA TACTTAAAAAATAAA TERM 509 326860 - 326896 + F 77 -11.1 -2.90392 | opp_overlap 326858 326860 326866, overlap 326866 TGCACGAAACAAACA TGAAAAGACAGCGAG CGCATGA TTCGCTGTCTTTTTA TATACTTAAAAAATA TERM 510 326896 - 326860 - f 73 -8.2 -3.85603 | opp_overlap 326860 326866, overlap 326858 326866 TGCACGAAACAAACA TGAAAAGACAGCGA GCGCATGAT TCGCTGTCTTTTTA TATACTTAAAAAATA TERM 511 326866 - 326890 + F 88 -7.9 -5.04175 | opp_overlap 326860 326858 326866, overlap 326860 AAACAAACATGAAAA GACAGCGAG CGCATGA TTCGCTGTC TTTTTATATACTTAA TERM 512 326890 - 326866 - f 81 -7.2 -4.56802 | opp_overlap 326866 326860, overlap 326860 326858 AAACAAACATGAAAA GACAGCGA GCGCATGAT TCGCTGTC TTTTTATATACTTAA sigV 326980 - 327459 + | DNA-directed RNA polymerase specialized sigma subunit Aflv_0296 327446 - 328615 + | hypothetical protein TERM 513 328637 - 328613 - T 100 -15.9 -3.07443 | opp_overlap 328613 328617, overlap 328617 TTAGACCGCATCGAA TAAACGAGGGA GTT TCCCTCGTTTA TTTCGTTAAAATAAA TERM 514 328613 - 328637 + T 100 -15.9 -3.91911 | opp_overlap 328613 328617, overlap 328617 TTAGACCGCATCGAA TAAACGAGGGA GTT TCCCTCGTTTA TTTCGTTAAAATAAA TERM 515 328633 - 328617 - T 100 -12.3 -4.20783 | opp_overlap 328613 328617, overlap 328613 ACCGCATCGAATAAA CGAGGGA GTT TCCCTCG TTTATTTCGTTAAAA TERM 516 328617 - 328633 + T 100 -12.3 -4.56702 | opp_overlap 328617 328613, overlap 328613 ACCGCATCGAATAAA CGAGGGA GTT TCCCTCG TTTATTTCGTTAAAA Aflv_0297 329306 - 328635 - | Uncharacterized repeat-containing protein Aflv_0298 329546 - 330607 + | Nitric oxide synthase, oxygenase domain TERM 517 330608 - 330626 + F 93 -7.4 -5.47821 | opp_overlap 330608 330610 CGTCCTTATGAATGA CACCGC CGTTCAC GCGGTG TTTTTTTACATGAAT TERM 518 330725 - 330715 - f 73 -2.4 -5.31158 | GAAAAAAAGGAAAAA GGGG GGA CTCC AGTGGATTTTATTGA tlpB 330727 - 332208 + | Methyl-accepting chemotaxis protein TERM 519 332248 - 332211 - T 85 -8.6 -4.45577 | gap 1, opp_overlap 332213 332215 332219, overlap 332212 332215 ACAAATCGTATAAAA CGTAGAAAGCACCTCGA GAAAT TGGAGGTGCTTTCT-CA TATTGATGTTGTCTG TERM 520 332247 - 332212 - T 73 -9.9 -3.26262 | gap 1, opp_overlap 332213 332215 332219, overlap 332211 332215 CAAATCGTATAAAAC GTAGAAAGCACCTCGA GAAAT TGGAGGTGCTTTCT-C ATATTGATGTTGTCT TERM 521 332213 - 332248 + T 72 -9.2 -3.28842 | gap 1, opp_overlap 332212 332211 332215, overlap 332215 332219 AAATCGTATAAAACG T-AGAAAGCACCTCGAG AAA TTGGAGGTGCTTTCTCA TATTGATGTTGTCTG TERM 522 332245 - 332215 - T 83 -12.7 -2.80345 | opp_overlap 332213 332215 332219, overlap 332212 332211 ATCGTATAAAACGTA GAAAGCACCTCGA GAAAT TGGAGGTGCTTTC TCATATTGATGTTGT TERM 523 332215 - 332245 + T 90 -13.4 -2.81181 | opp_overlap 332215 332212 332211, overlap 332213 332219 ATCGTATAAAACGTA GAAAGCACCTCGAG AAA TTGGAGGTGCTTTC TCATATTGATGTTGT TERM 524 332219 - 332241 + T 79 -8.4 -4.07455 | opp_overlap 332215 332212 332211, overlap 332215 332213 TATAAAACGTAGAAA GCACCTCGAG AAA TTGGAGGTGC TTTCTCATATTGATG Aflv_0300 332858 - 332301 - | Stand-alone sensor domain protein TERM 525 332962 - 332945 - R 100 -9.1 -5.5943 | opp_overlap 332945 AAATCATGAAAAAAA GCAGGGA AGGT CCCCTGC TTTTGTCGAGAGCAA TERM 526 332945 - 332962 + r 85 -8.4 -4.36914 | opp_overlap 332945 AAATCATGAAAAAAA GCAGGG AAGGTC CCCTGC TTTTGTCGAGAGCAA TERM 527 332966 - 333024 + r 74 -9 -3.52111 | gap 1, opp_overlap 332978, overlap 332978 AAGGTCCCCTGCTTT TGTCGAGAGCAAGCACTTCGCGTCGAA AAGACG TTCGGCATGAAGTGCTTACCTTCG-CA TTATAGTCGTTTTGC TERM 528 332978 - 333013 + r 75 -10.5 -3.19513 | opp_overlap 332978, overlap 332966 TTTTGTCGAGAGCAA GCACTTCGCGTCGAA AAGACG TTCGGCATGAAGTGC TTACCTTCGCATTAT Aflv_0301 333489 - 333025 - | Cell wall-associated hydrolase (NlpC/P60 family) Aflv_0302 333739 - 334389 + | Membrane protein TerC ortholog TERM 529 334482 - 334511 + T 91 -6.4 -5.47821 | opp_overlap 334484, overlap 334483 334484 TGTGAATATACTTGA AAGGGCTATCTC CGTAAC GAGATAGCCCGA TTTTTTTAAATAAAT TERM 530 334483 - 334510 + T 83 -9.9 -3.87608 | opp_overlap 334484, overlap 334482 334484 GTGAATATACTTGAA AGGGCTATCTC CGTAAC GAGATAGCCCG ATTTTTTTAAATAAA TERM 531 334509 - 334484 - T 95 -13.4 -3.66883 | opp_overlap 334484 334483 334482 TGAATATACTTGAAA GGGCTATCTC CGTAAC GAGATAGCCC GATTTTTTTAAATAA TERM 532 334484 - 334509 + T 90 -13.4 -2.91842 | opp_overlap 334484, overlap 334483 334482 TGAATATACTTGAAA GGGCTATCTC CGTAAC GAGATAGCCC GATTTTTTTAAATAA Aflv_0303 337003 - 334517 - | Multidomain redox protein (NAD(FAD)-dependent oxidoreductase; Rhodanese domain; SirA-like redox domain; Peroxiredoxin domain) TERM 533 334875 - 334891 + g 73 -3.7 -5.055 | opp_overlap 334875 TTGAGACCCCAGAAT GTAAAGA ACA TCGTTAC TTTTTTACCCATTGC TERM 534 335063 - 335079 + g 72 -9.5 -3.22898 | opp_overlap 335063, overlap 335048 335061 CGTTTTATTTTCAAA CGTTGTT TTT AACAACG TATTGCCTGTTTTTT TERM 535 335079 - 335063 - G 76 -9.5 -3.57144 | opp_overlap 335048 335063 335061 CGTTTTATTTTCAAA CGTTGTT TTT AACAACG TATTGCCTGTTTTTT TERM 536 336476 - 336493 + g 76 -2.5 -5.32608 | TACCCCGATAAACCC GCCGCCG ATAA CGACCGC TTTTTTCGGTTTTTT Aflv_0304 337091 - 337855 + | Arginase family enzyme Aflv_0305 337953 - 338183 + | Fe2+ transport system protein A TERM 537 339025 - 339037 + G 70 -2.6 -5.07486 | AACGAATAAATATGT CGGC ATTCC GCTG TTTTTATTGGCGATG Aflv_0306 338180 - 340183 + | Fe2+ transport system protein B Aflv_0307 340198 - 340344 + | Uncharacterized conserved protein, contains CXXC motif TERM 538 340340 - 340355 + T 90 -9 -5.09895 | opp_overlap 340340 GTTGTCATGAAAAAA GCTGAC ATCA GTCAGC TTTTTTCAATAGATG TERM 539 340355 - 340340 - T 90 -9 -5.14563 | opp_overlap 340340 GTTGTCATGAAAAAA GCTGAC ATCA GTCAGC TTTTTTCAATAGATG Aflv_0308 340639 - 340361 - | Acylphosphatase TERM 540 341050 - 341038 - g 70 -7.7 -3.68359 | opp_overlap 341038, overlap 341032 GTGCCAAAAGGAGAA CATCG TAT CGATG TGTATCCAGCAGGAC Aflv_0309 340744 - 341484 + | hypothetical protein TERM 541 341487 - 341523 + T 71 -9.6 -2.79983 | opp_overlap 341492, overlap 341492 ATTAGAGTCATAAAT AAAAAGAGCTTTGATC GGAAG GGTCAAGGCTCTTTTC GTTGTTGCCGCTTTT TERM 542 341518 - 341492 - T 87 -5.1 -5.38958 | opp_overlap 341492 341487 AGTCATAAATAAAAA GAGCTTTGATC GGAAG GGTCAAGGCTC TTTTCGTTGTTGCCG TERM 543 341492 - 341518 + T 91 -9.5 -4.56133 | opp_overlap 341492, overlap 341487 AGTCATAAATAAAAA GAGCTTTGATC GGAAG GGTCAAGGCTC TTTTCGTTGTTGCCG Aflv_0310 342007 - 341510 - | Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) Aflv_0311 342719 - 342012 - | Sirohydrochlorin ferrochelatase TERM 544 342420 - 342451 + g 93 -2.4 -6.11019 | gap 1, overlap 342420 342421 TTGTACACCGAATGG T-TTTCCGTATGTGA TCG TCACAGAAGGAAACA TTTTTTTTGCTTTTT TERM 545 342639 - 342665 + g 78 -5.1 -5.05301 | opp_overlap 342639 342637 GGGTACCGAAGAAGA GAGGCGTTC AACAAAAGC GATCGCCTC TTTTTGTCCTTCTTT Aflv_0312 343506 - 342724 - | Uroporphyrinogen-III methylase TERM 546 342824 - 342837 + g 75 -2.3 -5.41143 | ATAATGATACTCGGG CTAGC AATC GCTTG TTTTTTTGCAACGTC Aflv_0313 344097 - 343507 - | Adenylylsulfate kinase Aflv_0314 345170 - 344094 - | ATP sulfurylase (sulfate adenylyltransferase) TERM 547 344233 - 344219 - G 70 -7.1 -3.90744 | TTGTGCCGGAAAGAA CGACG TGAGC CGTCG CATCATGAGGGCACG cysP 346261 - 345215 - | Sulfate permease TERM 548 345247 - 345266 + g 73 -3.5 -5.06451 | opp_overlap 345243 345247, overlap 345229 345238 GCTCGTGAAACGAAC GACGTTC CTCTGT GATCGTC TTTTTTAAGCTAATC cysH 346981 - 346274 - | 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase) Aflv_0317 347164 - 348141 + | c-di-GMP phosphodiesterase class II (HD-GYP domain) Aflv_0318 348354 - 348136 - | hypothetical protein Aflv_0319 348430 - 348900 + | Protein phosphatase, low molecular weight phosphatase family Aflv_0320 348911 - 349177 + | Uncharacterized conserved protein, involved in general stress response TERM 549 349778 - 349795 + G 72 -7.7 -3.75665 | overlap 349772 349768 CTATACGTTTTTGCA CCGAGCA AATA TGTTCGG TTTCGTGACGTCTGG Aflv_0321 349196 - 350029 + | Ribonuclease BN-like family enzyme TERM 550 350235 - 350213 - T 100 -17.8 -3.87323 | opp_overlap 350213, overlap 350194 TATCACTAAAGAGAA GAGGGATGCG GCA CGCATCCCTC TTTATTCTGCGATTT TERM 551 350213 - 350235 + T 100 -17.8 -4.33851 | opp_overlap 350213 350194 TATCACTAAAGAGAA GAGGGATGCG GCA CGCATCCCTC TTTATTCTGCGATTT Aflv_0322 350383 - 350237 - | hypothetical protein TERM 552 350401 - 350414 + r 77 -5.3 -4.98352 | TGATCGCTCTCCCCT CTGTT TTAA AACAG TTTATTTTGTTTAAT Aflv_0323 351621 - 350449 - | Permease of the major facilitator superfamily TERM 553 351001 - 350986 - G 74 -6.1 -4.57569 | TGATGCTTCTAAAAA GCCGT AACCAA ACGGC AACAACAAAGCTGGC TERM 554 351619 - 351607 - G 75 -3.3 -5.13016 | AACTAAAATGAAAAA GTGAC GTT GTCGC ATAATTCCCTCCTGT TERM 555 351760 - 351772 + H 100 -3.4 -6.09888 | AAAAGGAGACGATTG GATG GAACG CATC TTTTTTTTATTAACG TERM 556 351803 - 351819 + G 70 -7.3 -3.794 | GTCATCGGTGTTCCA CTTTCTG TTG CAGGAAG TTTACTACATTGGCC TERM 557 352135 - 352110 - g 71 -4.1 -4.89567 | gap 1 GTTTAAAATATAAAA GGCAATCATTTA ACG TATATGAT-GCC CGTCATAATTCAGGG Aflv_0324 351761 - 352810 + | Ca2+/H+ antiporter TERM 558 352811 - 352832 + F 100 -8.7 -5.93809 | TTTTATTTGTTGTAA TCCGTCAGT TATT GCTGGCGGA TTTTTTTTATAAGGA Aflv_0325 352822 - 353688 + | hypothetical protein TERM 559 353685 - 353733 + T 90 -8.4 -5.0925 | gap 1, opp_overlap 353698, overlap 353689 353698 TAGCGACGTACCACG ATG-ACAAGAAAAAGCTTGTCGA GCGT TCGACAAGCTTTTTATCGTTCAA TTTTTGCTTTTCGCG TERM 560 353689 - 353728 + T 95 -13.8 -3.49728 | opp_overlap 353698, overlap 353685 353698 GACGTACCACGATGA CAAGAAAAAGCTTGTCGA GCGT TCGACAAGCTTTTTATCG TTCAATTTTTGCTTT TERM 561 353698 - 353719 + T 100 -13.1 -4.98857 | opp_overlap 353698, overlap 353689 353685 CGATGACAAGAAAAA GCTTGTCGA GCGT TCGACAAGC TTTTTATCGTTCAAT TERM 562 353719 - 353698 - T 100 -13.1 -5.22006 | opp_overlap 353698 353689 353685 CGATGACAAGAAAAA GCTTGTCGA GCGT TCGACAAGC TTTTTATCGTTCAAT Aflv_0326 354853 - 353723 - | Radical SAM superfamily enzyme Aflv_0327 354951 - 355154 + | hypothetical protein TERM 563 355137 - 355170 + F 72 -8.3 -3.54129 | gap 1, opp_overlap 355147, overlap 355138 355147 355160 CGGTTTAAAAAAGAT TG-GGAAAAAAGTCGC TAA GCGGCTTTTTTTCGCG TTTGAAAAAGATGTA TERM 564 355138 - 355169 + F 70 -9.6 -2.72263 | gap 1, opp_overlap 355147, overlap 355137 355147 355160 GGTTTAAAAAAGATT G-GGAAAAAAGTCGC TAA GCGGCTTTTTTTCGC GTTTGAAAAAGATGT TERM 565 355147 - 355159 + F 93 -6.9 -5.49809 | opp_overlap 355147, overlap 355138 355137 AAGATTGGGAAAAAA GTCGC TAA GCGGC TTTTTTTCGCGTTTG TERM 566 355159 - 355147 - f 76 -4.7 -5.04987 | opp_overlap 355147 355138 355137 AAGATTGGGAAAAAA GTCGC TAA GCGGC TTTTTTTCGCGTTTG TERM 567 355228 - 355211 - f 73 -2.1 -5.1925 | gap 1 GGAGAATTCAAAAAA TTGTTACA TAT TG-AACAA AGGGGAAGGGAATCG Aflv_0328 355267 - 356769 + | Fumarate hydratase class I, aerobic TERM 568 356776 - 356800 + G 100 -8.6 -5.46276 | opp_overlap 356776 GTATTTTAATGGAAA TCCGTCTAGT GATGA GCTAGGCGGA TTTTTTATATCTCTT TERM 569 356860 - 356887 + G 75 -2.2 -5.28983 | gap 1 GGAGGTGCAAGCAGT GAAAAAAA-CGAT CAT GTTGCTTTTTTTC TTTTTATGTTTTCCG Aflv_0329 356759 - 357637 + | Polysaccharide deacetylase TERM 570 357629 - 357652 + F 88 -9 -4.59982 | gap 1, overlap 357645 CCTACTTGGCTTTTT TCCCTTTG-AC GAT GTGCAAAGGGA TTTGTTTCGTTATAA TERM 571 357828 - 357873 + G 82 -4.9 -5.29445 | opp_overlap 357827 357822 357864 TACATAAATGAAACT CCGGTTGCTGTTTCTG-TCCG CAGTAT CGGAACA-AAACAAGAACCGG TTTTTCTTGTTGAAG Aflv_0330 357642 - 358559 + | 3-methyladenine DNA glycosylase TERM 572 358710 - 358693 - g 71 -7 -4.15044 | opp_overlap 358692 TTCCGGGGGAAGAAA TCGTCG TTCAGG CGACGA ATGTGTATCCGACGT TERM 573 359085 - 359066 - g 86 -12.2 -3.08679 | overlap 359078 CTGCTTGATTCAACA TGACGCGA CTAA TCGCGTCA CAACGGTCGTGAAAG TERM 574 359340 - 359320 - g 78 -5.4 -5.055 | opp_overlap 359336 TTAACGGGCAAAAAA CGTCGC TTATTTTTG GCGACG AAACGATCGTTCTTG TERM 575 359532 - 359492 - g 82 -6.6 -4.7497 | opp_overlap 359490 359496 CGCACTCACGAAAAA CGAACGTGTCGTCGATGC GTATT GCGGCGTCGGCACGATCG GGCTTTGGCTTGCCC Aflv_0331 358572 - 359930 + | tRNA (Uracil-5-)-methyltransferase fused to TRAM domain Aflv_0332 359940 - 360416 + | NUDIX family hydrolase Aflv_0333 363572 - 360393 - | N-terminal HKD family nuclease fused to DNA/RNA helicase domain TERM 576 361362 - 361377 + g 71 -4.7 -4.66953 | ATCTAATATTTCTGG TGAGC GCCCAA GCTCA TTTTTAAACTGTTGA TERM 577 362770 - 362749 - G 74 -9.5 -3.30441 | opp_overlap 362748 362749 362753, overlap 362753 AATGCATAATCAAGA GAAATCGTG TCCG CACGATTCC ATATTTTTTCGAACA TERM 578 362766 - 362753 - G 74 -6.7 -4.29327 | opp_overlap 362749 362748 362753, overlap 362749 CATAATCAAGAGAAA TCGTG TCCG CACGA TTCCATATTTTTTCG TERM 579 364755 - 364742 - g 84 -5.3 -5.31855 | GACGAAGAAGAAAAA GCAAT CGAG ATTGC GCAAAAAGTCATTGA TERM 580 365213 - 365227 + G 74 -7 -4.37886 | CCTGAACCATCTGAT CGGCCG TAT CGGACG TTTTGTGGGACGTAA Aflv_0334 363800 - 365242 + | Uncharacterized conserved protein, YdiU/UPF0061 family TERM 581 365247 - 365265 + F 88 -8.9 -4.62069 | opp_overlap 365247 GTGGGACGTAAAAAA GCTCAAG GGTCA CTTGAGC TTTTTAAAATCCAGC TERM 582 365265 - 365247 - f 90 -8.9 -5.08824 | opp_overlap 365247 GTGGGACGTAAAAAA GCTCAAG GGTCA CTTGAGC TTTTTAAAATCCAGC TERM 583 366236 - 366226 - g 71 -3.2 -4.94058 | overlap 366227 GCAAGCTAAAGAAAA TCGC TGG GCAA GAAAACCGTTTCATG Aflv_0335 365427 - 366644 + | Transposase TERM 584 366924 - 366909 - g 78 -4 -5.1285 | AAAAAATAAAATAAA CGTCAT TGAA ATAACG CATGAACATATTGCG Aflv_0336 366829 - 367077 + | Transcriptional regulator, Crp family Aflv_0337 367110 - 367334 + | hypothetical protein TERM 585 367385 - 367364 - T 100 -12.3 -4.15396 | opp_overlap 367364, overlap 367367 GTTGAAATCAAATAA GAAGGCGCC CATA GACGCCTTC TTTTAATCTACTTTT TERM 586 367364 - 367385 + T 90 -10.1 -4.41797 | opp_overlap 367364 367367 GTTGAAATCAAATAA GAAGGCGCC CATA GACGCCTTC TTTTAATCTACTTTT TERM 587 367382 - 367367 - T 77 -8.2 -4.18294 | opp_overlap 367364, overlap 367364 GAAATCAAATAAGAA GGCGCC CATA GACGCC TTCTTTTAATCTACT adhA 368449 - 367388 - | Zn-dependent alcohol dehydrogenase TERM 588 367466 - 367485 + g 74 -4.3 -5.01042 | GTTAATGTTTTCAAG CGGTTGT ACTTCG ACAATCG TTTTTACTTTGCCTT TERM 589 368721 - 368747 + H 76 -6.7 -4.34402 | ATGCCAGCCAGTTGC CCTTCTTATAA GGAAA TGATAAGAAGG TTTTACTGTCGAACG TERM 590 368766 - 368793 + H 93 -7 -5.42605 | opp_overlap 368766 TACTGTCGAACGATA GCTGCCTATATA TTTG TTTTTAGGCAGC TTTTATTTTTATTAA TERM 591 369338 - 369324 - g 77 -3.6 -5.10461 | GCGATTCAACAAAAA CATTTA CAA CAAATG AGTGAAACATTGTCT TERM 592 369968 - 369954 - g 70 -2.8 -5.04222 | GAACTAAATGAAAAA TCCG CACAAAT CGGA AAAATCGTTGATGTG tlpA-1 368829 - 370520 + | Chemotaxis sensor protein (CHASE 3, HAMP, MCP domains) TERM 593 370526 - 370584 + T 89 -9.1 -4.71463 | gap 1, opp_overlap 370536 370537 370542, overlap 370502 370533 370537 CAAATTTTGAAGTGT G-CATCTATAAGGAAAAGGTGTCCTGAG AACT TTCGGGACACCTTCTCTTTATTTATGAC TTTCTTCTTTTACTT TERM 594 370533 - 370576 + T 100 -14.8 -4.05926 | opp_overlap 370536 370537 370542, overlap 370526 370537 TGAAGTGTGCATCTA TAAGGAAAAGGTGTCCTGAG AACT TTCGGGACACCTTCTCTTTA TTTATGACTTTCTTC TERM 595 370573 - 370536 - T 72 -9.2 -3.35798 | opp_overlap 370533 370526 370537, overlap 370537 370542 AGTGTGCATCTATAA GGAAAAGGTGTCCTGA GAACTT TCGGGACACCTTCTCT TTATTTATGACTTTC TERM 596 370537 - 370572 + T 100 -13.4 -4.59993 | opp_overlap 370536 370537 370542, overlap 370533 370526 GTGTGCATCTATAAG GAAAAGGTGTCCTGAG AACT TTCGGGACACCTTCTC TTTATTTATGACTTT TERM 597 370572 - 370537 - T 83 -12.7 -2.61264 | opp_overlap 370537 370533 370526, overlap 370536 370542 GTGTGCATCTATAAG GAAAAGGTGTCCTGA GAACTT TCGGGACACCTTCTC TTTATTTATGACTTT TERM 598 370567 - 370542 - T 88 -9 -4.50058 | opp_overlap 370537 370533 370526, overlap 370537 370536 CATCTATAAGGAAAA GGTGTCCTGA GAACTT TCGGGACACC TTCTCTTTATTTATG Aflv_0340 370766 - 370578 - | hypothetical protein Aflv_0341 370968 - 370840 - | hypothetical protein TERM 599 370917 - 370934 + g 100 -7.7 -5.75538 | CATACGTCACTTCTT GTGCGCT CGAG AGCGTAC TTTTTGTTTTTTCAC TERM 600 371061 - 371043 - R 100 -8.9 -5.65927 | opp_overlap 371039 TATCCAAATAAAAAA CCTGTTC GTGCA GAACAGG TTACGCTTCTTTTAA Aflv_0342 371634 - 371062 - | Acetyltransferase, RimL family TERM 601 371351 - 371361 + g 71 -6.8 -4.08394 | TGGTTATATCCTTTG CCGT GAT ACGG TTTTCCAAGCCATGT TERM 602 371723 - 371665 - R 72 -9.9 -3.06796 | gap 1, opp_overlap 371681, overlap 371668 371681 GTCGACCGCAGGGAA CGAGCCAC-CCTCGAAATTTTTTAATTT ATGC AAATCAAAAAATTTCGGGGTGGGAATCG AACCCACTAGAACCA TERM 603 371718 - 371668 - R 100 -15.9 -2.75382 | gap 1, opp_overlap 371681, overlap 371665 371681 GACCGCAGGGAACGA GCCACCCTCGAAATTTTTTAATTT ATGC AAATCAAAAAATTTCG-GGGTGGG AATCGAACCCACTAG TERM 604 371750 - 371736 - R 79 -10 -3.44319 | opp_overlap 371748 TCGAACCCACTAGAA CCAGCA CGT TGCTGG TGGCGCACCATTTGC TERM 605 371748 - 371760 + r 70 -7.7 -3.78409 | opp_overlap 371736 GAACCAGCACGTTGC TGGTG GCG CACCA TTTGCCTTCCCTTAC hutI 372983 - 371856 - | Imidazolone-5-propionate hydrolase TERM 606 372563 - 372573 + g 78 -4 -5.14477 | GTTGTTTGATGATCA TGTT TTC AACA TTTTTTCCATATGTC Aflv_0344 373932 - 373024 - | NAD dependent epimerase/dehydratase family enzyme Aflv_0345 373878 - 374801 + | Uncharacterized conserved protein, RecX family TERM 607 374814 - 374786 - TR 80 -8.2 -4.39002 | opp_overlap 374792, overlap 374792 AAAGTTTTTAGAAAA GAAAAAGGAGGA TTAAC TCCTCCTATTCC ACGATGATTTCAGCT TERM 608 374808 - 374792 - TR 100 -8 -5.54907 | opp_overlap 374792, overlap 374786 TTTAGAAAAGAAAAA GGAGGA TTAAC TCCTCC TATTCCACGATGATT Aflv_0346 375485 - 374808 - | Short-chain alcohol dehydrogenase TERM 609 376567 - 376556 - g 73 -3.6 -5.055 | CGAACGTGCAAAAAA GCGA CATG CCGC TTTTGCTTGCATGGA TERM 610 376860 - 376873 + G 71 -2.3 -5.12068 | overlap 376847 376848 376861 GCTCGGAACAGCGGT GCCGA TGGT TCGGA TTTTTATTAACTCTG Aflv_0347 375592 - 377280 + | L-lactate permease Aflv_0348 377325 - 377654 + | hypothetical protein TERM 611 377636 - 377682 + T 86 -7.6 -5.04222 | gap 1, opp_overlap 377647, overlap 377647 GTTGCCTATTTCATT ATTAAAGA-AAAGAGGTTGAC ACGAGC GTCAACCTCTTTCTCATTAAA TTTTTCGTTTGCTTA TERM 612 377670 - 377647 - T 100 -11.8 -4.95484 | opp_overlap 377636 377647 CATTATTAAAGAAAA GAGGTTGACA CGAG CGTCAACCTC TTTCTCATTAAATTT TERM 613 377647 - 377670 + T 88 -11.1 -4.08578 | opp_overlap 377647, overlap 377636 CATTATTAAAGAAAA GAGGTTGAC ACGAGC GTCAACCTC TTTCTCATTAAATTT Aflv_0349 377842 - 377678 - | hypothetical protein sspK 378011 - 377844 - | Small, acid-soluble spore protein K TERM 614 377910 - 377924 + g 75 -7.1 -4.30809 | opp_overlap 377909 AGGGTGCGTATTAAT CGTGC CGTTT GCACG TTTTGATGCGTATTC Aflv_0351 379072 - 378095 - | Membrane-bound metal-dependent hydrolase TERM 615 378686 - 378698 + g 77 -4.7 -5.00616 | TGTATTGATGATACC GAGGG CGA CCCAC TTTTTTGAAAAAGGA mutY 379095 - 380216 + | A/G-specific adenine glycosylase TERM 616 380237 - 380208 - T 100 -18.1 -2.76651 | opp_overlap 380200, overlap 380200 380210 AAAATATGGCAAGCA TACGAGTAAAGGC ATAT GCCTTTACTCGTA AAATACTCGTGTTCC TERM 617 380235 - 380210 - T 100 -16.3 -2.92018 | opp_overlap 380200, overlap 380208 380200 AATATGGCAAGCATA CGAGTAAAGGC ATAT GCCTTTACTCG TAAAATACTCGTGTT Aflv_0353 380462 - 380229 - | hypothetical protein sspE 380501 - 380704 + | Small acid-soluble spore protein (gamma-type SASP) TERM 618 380707 - 380743 + F 73 -9.5 -3.20435 | opp_overlap 380713, overlap 380713 GAAAAATCAATAACG GGCAAAGGGCATCGG TTTTCGT CCGATGCTCTTTTTC TTCCTCGCTGATTAA TERM 619 380713 - 380737 + F 90 -9.3 -5.14163 | opp_overlap 380713, overlap 380707 TCAATAACGGGCAAA GGGCATCGG TTTTCGT CCGATGCTC TTTTTCTTCCTCGCT Aflv_0355 380804 - 381334 + | Uncharacterized domain associated with RNAses G and E TERM 620 381360 - 381385 + F 100 -3.3 -6.07374 | opp_overlap 381360 TACATGGATCAAAAA CAACGGTTA GCTACTTG TCACCGTTG TTTTTTATTTTTTGT appD 381461 - 382540 + | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component TERM 621 383454 - 383504 + GF 83 -10.7 -3.57185 | gap 1, opp_overlap 383498, overlap 383452 383456 GAAGTTGAACAAGGG CATTACGTCGCTT-GCCATCTTTA TACA TAAGGATGGCTAAGCGATGAAATA TATTATTTCACTAAG TERM 622 383456 - 383502 + GF 100 -13.3 -3.35723 | gap 1, opp_overlap 383498, overlap 383454 383452 AGTTGAACAAGGGCA TTACGTCGCTT-GCCATCTTTA TACA TAAGGATGGCTAAGCGATGAAA TATATTATTTCACTA appF 382491 - 383483 + | ABC-type oligopeptide transport system, ATPase component TERM 623 383821 - 383807 - g 77 -6.4 -4.63527 | GCATTAGCGGAAAAA TGGGAA GTT TCCCCA GATGGACTTACGTAT TERM 624 384160 - 384145 - g 76 -7.6 -4.10453 | TAAATTTGGTGAAAA TCCTGT TGGA ACAGGA CCATTCGTCTTTAAA oppA 383531 - 385135 + | ABC-type dipeptide transport system, periplasmic component TERM 625 385148 - 385170 + G 90 -11.3 -3.70149 | TAATCGTTGTGTTGA GGGAGGGGA GGGAA TCCTCTCCC TTTCCATCATGTGAG TERM 626 385613 - 385630 + G 78 -4.1 -5.16572 | overlap 385615 385626 TGGTGTTAGCGTTAG TTGGCGT TTCG ATGCCGA TTTTTTGGCTTGGGT TERM 627 385916 - 385898 - g 70 -9.6 -2.79831 | TGAAGTCCGATTATA TTCGCACA GCA CGTGCGAA AGGATTAAGCATGTT appB 385141 - 386205 + | ABC-type dipeptide/oligopeptide/nickel transport system, permease component TERM 628 386663 - 386676 + G 76 -8.1 -4.08945 | opp_overlap 386662 TATTTTGTTAGCAAT CGGCA TCGT TGCCG TTTTAGGACCGTCGT appC 386220 - 387113 + | ABC-type dipeptide/oligopeptide/nickel transport system, permease component TERM 629 387112 - 387148 + T 93 -12.5 -4.13244 | opp_overlap 387117, overlap 387117 CACGCATGAAAAGCT AAAAAGATGTCCCGA GACGCAG TCGGGACATCTTTTA TTCTTGTTCTTCTGG TERM 630 387117 - 387143 + T 100 -12.4 -5.01823 | opp_overlap 387117, overlap 387112 ATGAAAAGCTAAAAA GATGTCCCGA GACGCAG TCGGGACATC TTTTATTCTTGTTCT TERM 631 387143 - 387117 - T 100 -12.4 -4.88222 | opp_overlap 387112 387117 ATGAAAAGCTAAAAA GATGTCCCGA GACGCAG TCGGGACATC TTTTATTCTTGTTCT Aflv_0361 388228 - 387146 - | hypothetical protein TERM 632 388363 - 388308 - R 100 -13.6 -5.5353 | opp_overlap 388308 388315 388323, overlap 388309 388315 TATATCAAGAAAAAA GGAAAAACATTAAAAGAACTGCCTCA TTTT CGAGACAGTTCTTTTTATGTTTATTC TGTTGACACCGATGG TERM 633 388308 - 388363 + r 91 -12.9 -3.02144 | opp_overlap 388308 388309 388315, overlap 388315 388323 TATATCAAGAAAAAA GGAAAAACATTAAAAGAACTGCCTC ATTTTC GAGACAGTTCTTTTTATGTTTATTC TGTTGACACCGATGG TERM 634 388363 - 388309 - R 100 -15.5 -3.90491 | gap 1, opp_overlap 388308 388315 388323, overlap 388308 388315 ATATCAAGAAAAAAG GAA-AAACATTAAAAGAACTGCCTCA TTTT CGAGACAGTTCTTTTTATGTTTATTC TGTTGACACCGATGG TERM 635 388315 - 388356 + r 95 -11.8 -4.46073 | opp_overlap 388315 388308 388309, overlap 388308 388323 AGAAAAAAGGAAAAA CATTAAAAGAACTGCCTC ATTTTC GAGACAGTTCTTTTTATG TTTATTCTGTTGACA TERM 636 388356 - 388315 - R 100 -14.7 -5.27769 | opp_overlap 388308 388315 388323, overlap 388308 388309 AGAAAAAAGGAAAAA CATTAAAAGAACTGCCTCA TTTT CGAGACAGTTCTTTTTATG TTTATTCTGTTGACA TERM 637 388323 - 388348 + r 90 -7.6 -5.28414 | opp_overlap 388315 388308 388309, overlap 388315 388308 GGAAAAACATTAAAA GAACTGCCTC ATTTTC GAGACAGTTC TTTTTATGTTTATTC gltA-2 392830 - 388358 - | Glutamate synthase large subunit TERM 638 392492 - 392503 + g 100 -3.6 -6.09888 | CTGAGCAAACAATTG GCGC ATAC GTGC TTTTTTTTCTTCCAC TERM 639 392574 - 392559 - G 82 -7.6 -4.5442 | overlap 392545 TGGCCAACGATAAAA TCGTTG CGGT CAACGA GTTGAGGATCGAGAT TERM 640 392589 - 392602 + g 75 -2.3 -5.27335 | AGTTGAGGATCGAGA TGGGC AGCA GCCAA TTTTTCTTTCCAAAG TERM 641 393078 - 393051 - R 82 -4.2 -5.40072 | opp_overlap 393051 TTTTCCGTAAAAAAA CGAGATGG GGAACATATATA CCATCTCG TTATATTTGTATATT gsaB 394460 - 393093 - | Glutamate-1-semialdehyde aminotransferase TERM 642 393312 - 393323 + g 70 -5.8 -4.31379 | opp_overlap 393311 TGTCGTAAAGTATAC GGTG AGCG CACC TTTTAGTCGGTTAAT TERM 643 394462 - 394476 + H 78 -7.2 -4.42238 | TTTGAGCACACCATT TGTTGA GTT TCAACA TTTTCGTTACACTAG Aflv_0364 394513 - 395517 + | ABC-type uncharacterized transport system, ATPase component Aflv_0365 395456 - 396301 + | ABC-type uncharacterized transport system, permease component Aflv_0366 396306 - 397091 + | ABC-type uncharacterized transport system, permease component TERM 644 397133 - 397098 - gf 79 -5.5 -4.99947 | opp_overlap 397098 GGGAATTAAATAAAA CATCCCCTCGTAT ATATAAAGGA ACAGGAGGGGATG TTGTGACGTATGTAT Aflv_0367 397049 - 397534 + | Ion transport protein TERM 645 397868 - 397858 - g 81 -4 -5.33026 | GAAGTTAAAGAAAAA CTTT GGG AAAG AGTATATGGGGATTG Aflv_0368 397547 - 398008 + | Peroxiredoxin TERM 646 398061 - 398084 + F 85 -3.8 -5.63517 | overlap 398062 CCTCAAAGATGTATG CGGTGATTCT GCGT AGAGTCGCCC TTTTTTCTTTCCGGA TERM 647 398062 - 398083 + F 73 -7.3 -3.97026 | overlap 398061 CTCAAAGATGTATGC GGTGATTCT GCGT AGAGTCGCC CTTTTTTCTTTCCGG perR 398178 - 398636 + | Peroxide regulon repressor PerR, fur family TERM 648 398664 - 398641 - T 93 -11.1 -4.69664 | opp_overlap 398641 GACATCATTGAAAAA GCTGATAGC ACTGGA GCTATCAGC TTTTTTTGTCTCTCG TERM 649 398641 - 398664 + T 100 -11.1 -5.76633 | opp_overlap 398641 GACATCATTGAAAAA GCTGATAGC ACTGGA GCTATCAGC TTTTTTTGTCTCTCG Aflv_0370 399022 - 398660 - | Membrane-associated metal-binding protein TERM 650 399236 - 399247 + G 73 -5.8 -4.57787 | AGGATCGGATTATTC TCCG GAGA CGGA TTTATTTGATGTTAT Aflv_0371 399129 - 400016 + | hypothetical protein TERM 651 400382 - 400367 - T 72 -9 -3.32343 | overlap 400378 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 652 401492 - 401480 - T 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 653 401819 - 401801 - T 73 -10.4 -2.85909 | AAAAGCGGAGAACGA TTCTTGAC GTA GTCAAGAA AACATCCGACGGAAG TERM 654 401854 - 401822 - T 74 -4.8 -4.68384 | gap 1, overlap 401825 401834 401853 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 655 401992 - 402008 + T 82 -8.7 -4.23486 | overlap 401989 401993 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 656 401993 - 402007 + T 75 -10 -3.13007 | overlap 401992 401989 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 657 402412 - 402393 - T 89 -12.2 -3.66803 | opp_overlap 402392 402391 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 658 403449 - 403431 - T 71 -6 -4.21194 | overlap 403435 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 659 403945 - 403932 - T 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 660 406120 - 406100 - T 75 -9.7 -3.31263 | overlap 406102 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAGT TERM 661 406118 - 406102 - T 79 -10.9 -3.22475 | overlap 406100 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 662 407613 - 407574 - T 100 -19.6 -3.14931 | opp_overlap 407579, overlap 407579 CGTACGGGTCACTAA TAAAAGTAGGGCTAACCT TGCA AGGTTAGCCCTACTTTTT TGTATTAGATGCATC TERM 663 407608 - 407579 - T 100 -19.5 -4.71426 | opp_overlap 407579, overlap 407574 GGGTCACTAATAAAA GTAGGGCTAACCT TGCA AGGTTAGCCCTAC TTTTTTGTATTAGAT TERM 664 407579 - 407608 + T 100 -19.5 -5.48063 | opp_overlap 407579 407574 GGGTCACTAATAAAA GTAGGGCTAACCT TGCA AGGTTAGCCCTAC TTTTTTGTATTAGAT czcD 408624 - 407650 - | Co/Zn/Cd efflux system component TERM 665 408252 - 408236 - G 74 -6.5 -4.57209 | overlap 408237 AGATTAACGACAAAA CCGATCG TTG CGATCGT TAACATGAGTGAAAA TERM 666 408251 - 408237 - G 76 -10 -3.33241 | overlap 408236 GATTAACGACAAAAC CGATCG TTG CGATCG TTAACATGAGTGAAA TERM 667 410370 - 410389 + GH 80 -6.5 -4.82901 | CGAAAAATGGATGAT TACGTGA AATCCC TCACGTA TTTTTATAAAAAACA glgB 408879 - 410825 + | 1,4-alpha-glucan branching enzyme TERM 668 411116 - 411102 - gf 70 -5.8 -4.2828 | CGCGATTTATCAAAA TCTAAA CTA TTTAGA GCAATACGATCCGGA glgC 410722 - 411945 + | Glucose-1-phosphate adenylyltransferase glgD 411933 - 412955 + | ADP-glucose pyrophosphorylase TERM 669 413050 - 413036 - g 70 -5.7 -4.25104 | GGTGCGCTACCAAAA GAGCT GAAAA AGCTC GGAACCGATGTGCGT TERM 670 413358 - 413371 + G 71 -2.3 -5.10461 | opp_overlap 413360 GTCATGATTGGCATA CAGGA ATGA TCCCG TTTTTGTTGCGTGAA TERM 671 413636 - 413622 - g 84 -10 -3.78449 | AAGAAGAGATTCAAA CACCGT ATT ACGGTG AGCGGCTTGACGGAC glgA 412952 - 414406 + | Glycogen synthase TERM 672 415756 - 415738 - g 75 -5.3 -4.90079 | gap 1, opp_overlap 415738 415751, overlap 415742 AGTTTAATAATAAAA CGAATGGG ATTA CCCAT-CG TCGTTGGTTGCTGAA glgP 414384 - 416780 + | Glucan phosphorylase TERM 673 416819 - 416788 - T 93 -8 -5.5112 | opp_overlap 416791 416818, overlap 416789 416791 TTCACTAATAAAAAA TCAGTCCTGTAAGC ATAT GCTCACAGGACTTT CTTATGAAGTATAAG TERM 674 416818 - 416789 - T 90 -11.5 -3.89587 | opp_overlap 416791, overlap 416788 416791 TCACTAATAAAAAAT CAGTCCTGTAAGC ATAT GCTCACAGGACTT TCTTATGAAGTATAA TERM 675 416791 - 416816 + T 95 -11.9 -4.32579 | opp_overlap 416789 416788 416791 ACTAATAAAAAATCA GTCCTGTAAGC ATAT GCTCACAGGAC TTTCTTATGAAGTAT TERM 676 416816 - 416791 - T 100 -14.1 -3.51774 | opp_overlap 416791, overlap 416789 416788 ACTAATAAAAAATCA GTCCTGTAAGC ATAT GCTCACAGGAC TTTCTTATGAAGTAT dksA 417552 - 416821 - | DnaK suppressor protein TERM 677 417634 - 417602 - R 74 -5.1 -4.75372 | gap 1, opp_overlap 417609, overlap 417609 AGTATGGACTAAAAA GAAAAAACCATAGC GCCAAG ACTATGGTTTTT-C TTAACAATTATTGCA TERM 678 417609 - 417628 + r 72 -3.6 -5.08088 | opp_overlap 417602 417609 ACTAAAAAGAAAAAA CCATAG CGCCAAGA CTATGG TTTTTCTTAACAATT TERM 679 417628 - 417609 - R 100 -4.3 -5.95286 | opp_overlap 417609, overlap 417602 ACTAAAAAGAAAAAA CCATAGC GCCAAG ACTATGG TTTTTCTTAACAATT menA 418577 - 417642 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 680 418236 - 418220 - G 79 -7.9 -4.40003 | TGGCACAAATATAAA CGCCAAG CAA CATGGCG ATAGCGAAAAAAGAC TERM 681 418260 - 418270 + g 73 -5.4 -4.7373 | opp_overlap 418260 AAAAGACCAAGCAAG CAGT AAA ACTG TTTTTGGTGAGATGC menF 418735 - 420090 + | Menaquinone-specific isochorismate synthase TERM 682 421293 - 421313 + G 76 -2.5 -5.39721 | overlap 421281 421295 GTTGGCAACAGTATG CCTATTCGT GAT GCGGATACG TTTTTTATGTCATCG menD 420081 - 421826 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Aflv_0382 421823 - 422650 + | Alpha/beta superfamily hydrolase menB 422640 - 423458 + | Dihydroxynaphthoic acid synthase TERM 683 423468 - 423493 + F 100 -14.9 -5.42259 | opp_overlap 423468 CCATAAAAATAAAAA CAGCTTGATGT GTAT ACATCAAGCTG TTTTTTTGAAGGTGG TERM 684 423493 - 423468 - f 100 -14.9 -5.69262 | opp_overlap 423468 CCATAAAAATAAAAA CAGCTTGATGT GTAT ACATCAAGCTG TTTTTTTGAAGGTGG menE 423477 - 424943 + | O-succinylbenzoic acid-CoA ligase TERM 685 424930 - 424978 + T 82 -7.8 -4.56802 | gap 2, opp_overlap 424941 424944, overlap 424941 424944 ATAAGTTGAAAAACT GGATCAATGAATAAGAGGAGGC AGCCAAC GCCTCCTCTTATTGA-T-ATCC TTTTGCTGTTTCTTT TERM 686 424941 - 424969 + T 93 -13.3 -3.37531 | opp_overlap 424941 424944, overlap 424930 424944 AACTGGATCAATGAA TAAGAGGAGGC AGCCAAC GCCTCCTCTTA TTGATATCCTTTTGC TERM 687 424969 - 424941 - T 95 -14 -3.40639 | opp_overlap 424941 424930 424944, overlap 424944 AACTGGATCAATGAA TAAGAGGAGGCA GCCAA CGCCTCCTCTTA TTGATATCCTTTTGC TERM 688 424944 - 424966 + T 86 -10.6 -3.80452 | opp_overlap 424941 424944, overlap 424941 424930 TGGATCAATGAATAA GAGGAGGC AGCCAAC GCCTCCTC TTATTGATATCCTTT TERM 689 424966 - 424944 - T 90 -11.3 -3.83844 | opp_overlap 424944 424941 424930, overlap 424941 TGGATCAATGAATAA GAGGAGGCA GCCAA CGCCTCCTC TTATTGATATCCTTT cydB 426049 - 424967 - | Cytochrome bd-type quinol oxidase, subunit 2 TERM 690 425428 - 425391 - GT 70 -8.3 -3.38991 | overlap 425389 ACCGTTGCAATAATA GCAGCAGGGCGCGCG ACTGCATA CGCTCGCTCCGCTAC CTCTCCAACCGCTTT cydA 427388 - 425985 - | Cytochrome bd-type quinol oxidase, subunit 1 TERM 691 426808 - 426792 - GR 75 -9.5 -3.40371 | opp_overlap 426791 426790 426794 GACGGTATGAACGAA CATATGC CAT GCATATG GATTTGTTACCACTT TERM 692 427349 - 427359 + gr 81 -4 -5.25893 | TAAGTCCCCCTCCAA CATT CAA AATG TTTTTTACTATGTAT TERM 693 427483 - 427507 + r 86 -10 -4.12315 | opp_overlap 427485, overlap 427485 CATGAAAAAGTGGAA AACCCCTTGC GACAG GCAAGGGGTG TTTAGTTATTCGTTT TERM 694 427485 - 427505 + r 90 -12.6 -3.63559 | opp_overlap 427485, overlap 427483 TGAAAAAGTGGAAAA CCCCTTGC GACAG GCAAGGGG TGTTTAGTTATTCGT TERM 695 427505 - 427485 - R 100 -12.6 -4.31329 | opp_overlap 427483 427485 TGAAAAAGTGGAAAA CCCCTTGC GACAG GCAAGGGG TGTTTAGTTATTCGT Aflv_0387 427674 - 427513 - | Uncharacterized conserved protein Cys rich protein TERM 696 427769 - 427749 - H 71 -4.1 -4.88129 | opp_overlap 427749 AAAAATGAGCAAAAA TAATGAGAA TTT TTATCATTA TATGTTGACATAGAT Aflv_0388 427845 - 428144 + | Predicted diverged REC-like domain protein Aflv_0389 428152 - 428604 + | Predicted diverged REC-like domain protein TERM 697 428625 - 428584 - T 72 -8.3 -3.48766 | gap 1, opp_overlap 428560 428586 428597, overlap 428586 428597 TTTACAAGTGAAACA TATTGTAAAAAAACCGGG TAGTTCT CCCGGTT-TTTTACAATT CATCAAACCCGTTCA TERM 698 428623 - 428586 - T 80 -10.9 -3.31177 | gap 1, opp_overlap 428586 428597, overlap 428584 428597 TACAAGTGAAACATA TTGTAAAAAAACCGGG TAGTTCT CCCGGTT-TTTTACAA TTCATCAAACCCGTT TERM 699 428586 - 428623 + T 79 -10.9 -3.14463 | gap 1, opp_overlap 428586 428584 428597, overlap 428597 TACAAGTGAAACATA TTGTAAAAAAACCGGG TAGTTCT CCCGGTT-TTTTACAA TTCATCAAACCCGTT TERM 700 428597 - 428613 + T 83 -6.5 -5.10029 | opp_overlap 428586 428584 428597, overlap 428586 CATATTGTAAAAAAA CCGGG TAGTTCT CCCGG TTTTTTACAATTCAT TERM 701 428613 - 428597 - T 91 -6.5 -5.45726 | opp_overlap 428597 428586, overlap 428586 428584 CATATTGTAAAAAAA CCGGG TAGTTCT CCCGG TTTTTTACAATTCAT nrdF 429655 - 428618 - | Ribonucleotide reductase, beta subunit TERM 702 429521 - 429509 - GT 76 -7.7 -4.0896 | opp_overlap 429508 429509, overlap 429497 AAACGGCGTCCAAAA GTTGC CGA GCAAC ATTTTGTATATATCG Aflv_0391 430100 - 429609 - | Flavodoxin Aflv_0392 431438 - 430263 - | Transposase nrdE 433810 - 431534 - | Ribonucleotide reductase, alpha subunit TERM 703 433863 - 433845 - R 100 -8.1 -6.14618 | opp_overlap 433862 TAGAAAATAAAAAAA TCCGCCC TTGTT GAGCGGA TGAAACGATGGAAAA TERM 704 433862 - 433904 + r 100 -15.1 -3.35679 | opp_overlap 433845 433869, overlap 433869 CGCCCTTGTTGAGCG GATGAAACGATGGAAAAAG GCATG CTTTCACCATCGTTTCATC TTCTCAATCCCCGAA TERM 705 433897 - 433869 - R 70 -8.2 -3.74693 | opp_overlap 433862 433869 GTTGAGCGGATGAAA CGATGGAAAAAG GCATG CTTTCACCATCG TTTCATCTTCTCAAT Aflv_0394 435259 - 434219 - | Cytochrome bd-type quinol oxidase, subunit 2 TERM 706 434455 - 434479 + g 71 -4.2 -4.89063 | gap 1, opp_overlap 434452, overlap 434458 CGATCGCAACCACCG CAAGG-CGTGG CATT CCGCGTCCATG TTTCTTTTTCCATGA Aflv_0395 436623 - 435271 - | Cytochrome bd-type quinol oxidase, subunit 1 TERM 707 436698 - 436676 - R 100 -8.5 -5.85178 | opp_overlap 436676 436679 AATATGCAAAAAAAA TAAGCGACC GTTAT GATCGCTTA TTGTAGAGCTTTTTT Aflv_0396 437745 - 436696 - | ABC-type metal ion transport system, periplasmic component/surface adhesin TERM 708 437568 - 437581 + g 82 -2.4 -5.71638 | opp_overlap 437568 ATACAGTTGTATAAA CGAT AAGTTG ATCG TTTTTTTCCTTATTC TERM 709 437741 - 437708 - G 100 -13.5 -4.41348 | gap 1, opp_overlap 437712, overlap 437712 CTCCTTCCAAATAAA GAAAGATGTT-TCTGA TCA TCAGATAACATCTTTC TCACTCCTGCTTTAT TERM 710 437737 - 437712 - G 100 -8.5 -4.78326 | gap 1, opp_overlap 437712, overlap 437708 TTCCAAATAAAGAAA GATGTT-TCTGA TCA TCAGATAACATC TTTCTCACTCCTGCT TERM 711 437712 - 437737 + g 77 -8.5 -3.93963 | gap 1, opp_overlap 437712 437708 TTCCAAATAAAGAAA GATGTT-TCTGA TCA TCAGATAACATC TTTCTCACTCCTGCT Aflv_0397 438965 - 437784 - | GTPase (G3E type), CobW/P47K subfamily TERM 712 439000 - 438988 - R 74 -6.3 -4.36914 | opp_overlap 438988 438987 CTCCTTTTGATAAAA CGTAA TCA TTACG ATTTACAACGTTTAT TERM 713 439060 - 439031 - R 100 -9.4 -5.83822 | opp_overlap 439037 CATATCGAAAAAAAA GAGAAAGGGCAA CTATTT TTGCTCTTTCTC TGGCACAGGATCAAA Aflv_0398 439267 - 439043 - | Uncharacterized conserved protein, HlyA family luxS 439355 - 439870 + | LuxS protein involved in autoinducer AI2 synthesis TERM 714 439875 - 439907 + T 100 -14.4 -5.47218 | opp_overlap 439875 439879 TATTTGGTTAAAAAA TAAAGGTTCAGACG CTACA TGTCTGAACCTTTA TTTTTTTCACTCGGC TERM 715 439907 - 439875 - T 100 -13.7 -5.0133 | opp_overlap 439875, overlap 439879 TATTTGGTTAAAAAA TAAAGGTTCAGAC GCTACAT GTCTGAACCTTTA TTTTTTTCACTCGGC TERM 716 439903 - 439879 - T 93 -10.1 -5.04249 | opp_overlap 439875, overlap 439875 TGGTTAAAAAATAAA GGTTCAGAC GCTACAT GTCTGAACC TTTATTTTTTTCACT Aflv_0400 440044 - 439889 - | hypothetical protein TERM 717 440068 - 440080 + H 79 -3.5 -5.3671 | overlap 440052 AATACAAAAGCGTAT TATTT TCC AAATA TTTTTTCGTTATGTT dps 440139 - 440576 + | DNA-binding ferritin-like protein (oxidative damage protectant) TERM 718 440574 - 440598 + GF 100 -13 -3.77087 | opp_overlap 440577, overlap 440577 AAATCGTTTCTCGGA TAAGGTGGGA GTTGG TCCCACCTTA TTTGCATGTTCAGTC TERM 719 440595 - 440577 - gf 78 -10.3 -3.28712 | opp_overlap 440574 440577 TCGTTTCTCGGATAA GGTGGGA GTTGG TCCCACC TTATTTGCATGTTCA TERM 720 440577 - 440595 + GF 89 -10.3 -4.011 | opp_overlap 440577, overlap 440574 TCGTTTCTCGGATAA GGTGGGA GTTGG TCCCACC TTATTTGCATGTTCA Aflv_0402 440545 - 441000 + | hypothetical protein Aflv_0403 441061 - 441537 + | NUDIX family hydrolase TERM 721 441519 - 441548 + T 71 -4.9 -4.64766 | opp_overlap 441540, overlap 441540 AAAACAAGAGTTACA GCGGCGGGG AATGTTGTAAAA CCCCACCGC TTTTTGACGTGTGGG Aflv_0404 442371 - 441565 - | ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Aflv_0405 443137 - 442358 - | ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component TERM 722 442523 - 442513 - G 78 -5.4 -4.93877 | overlap 442514 442517 TTGCAGTAAATAAAA CGAT CCG ATCG CTCATTGCAATCGCT TERM 723 442776 - 442797 + g 70 -5.1 -4.46757 | opp_overlap 442777, overlap 442777 CCGATTTGATGTAGA AGAGAGAGC GTTT GCTTTCTCG TTTTCTCGCTATATT Aflv_0406 444115 - 443138 - | ABC-type nitrate/sulfonate/taurine/bicarbonate transport system, periplasmic component TERM 724 444213 - 444191 - R 100 -11.2 -5.2853 | opp_overlap 444191 GACCTAAAAAGAAAA CCGCCGAGCA CAT CGCCCGACGG TTTAATTAATCGAAT Aflv_0407 444457 - 444215 - | hypothetical protein Aflv_0408 444633 - 445775 + | Fatty acid desaturase TERM 725 445777 - 445793 + T 100 -7.2 -5.93252 | opp_overlap 445777 TGAAAGAAAAGTAAA GCGTCG CATCT CGGCGC TTTTTTGTTTTTAGA TERM 726 445808 - 445835 + T 70 -5.5 -4.41548 | opp_overlap 445811, overlap 445811 445813 CTTTTTTGTTTTTAG AAAGACGTGGG CAATCA CCCACGCCTTA TTTTCTCCCCTGTAG TERM 727 445832 - 445811 - T 84 -10.1 -3.85698 | opp_overlap 445808 445811 445813 TTTTGTTTTTAGAAA GACGTGGGC AATC ACCCACGCC TTATTTTCTCCCCTG TERM 728 445811 - 445832 + T 78 -7.2 -4.32067 | opp_overlap 445811, overlap 445808 445813 TTTTGTTTTTAGAAA GACGTGGG CAATCA CCCACGCC TTATTTTCTCCCCTG Aflv_0409 446630 - 445833 - | ABC-type cobalt transport system, ATPase component TERM 729 446508 - 446498 - GT 79 -5.4 -4.91473 | GAACGGAAAAAGAAA CATC ATG GATG GCTTTATGACCATCT Aflv_0410 447289 - 446555 - | ABC-type cobalt transport system, permease component CbiQ Aflv_0411 448236 - 447271 - | ABC-type cobalt transport system, permease component TERM 730 447520 - 447504 - G 70 -5.1 -4.56597 | CTGCGGTGTGAAAAA TGGACCA TTC TAGCCCA TCTGGTTTGGATGAT Aflv_0412 449478 - 448288 - | N-acetylmuramoyl-L-alanine amidase fused to LysM and peptidoglycan binding domain TERM 731 448314 - 448324 + gr 76 -2.6 -5.25735 | TTTCTTTTAGTTTGC TTAT GAT ATAA TTTTTCGTTTTTTCG TERM 732 449304 - 449318 + gr 71 -7.2 -3.85817 | ATACTACTATATGTT CCATTT CGT AAATGG TTTGTACGAAACAAT TERM 733 449343 - 449370 + gr 79 -8.5 -4.08948 | opp_overlap 449348, overlap 449348 AACAATAAAAAAAGA AAAAAGCTGCC GAAACA GGCAGCTTTTG TTGTTTATGCGATTG TERM 734 449365 - 449348 - GR 100 -8.4 -6.12458 | opp_overlap 449348 449343 TAAAAAAAGAAAAAA GCTGCC GAAACA GGCAGC TTTTGTTGTTTATGC TERM 735 449348 - 449365 + gr 100 -8.4 -5.05116 | opp_overlap 449348, overlap 449343 TAAAAAAAGAAAAAA GCTGCC GAAACA GGCAGC TTTTGTTGTTTATGC pckA 451045 - 449375 - | Phosphoenolpyruvate carboxykinase (ATP) TERM 736 450196 - 450175 - GH 74 -4.4 -4.87626 | CTTCAATATTAAAAA CACCGTTG TTTGAC CAACCGTG CTCGTCATCGCCAAT TERM 737 451289 - 451270 - H 86 -7.9 -4.85433 | opp_overlap 451270 AGACAAATGCAAAAA CCTTTCC TCTGAG GGAAAGG TTTTTTTCACGATAG TERM 738 451270 - 451289 + H 95 -8.6 -5.42259 | opp_overlap 451270 AGACAAATGCAAAAA CCTTTCCT CTGA GGGAAAGG TTTTTTTCACGATAG metK 451365 - 452570 + | S-adenosylmethionine synthetase TERM 739 452604 - 452578 - T 91 -9.5 -4.51994 | opp_overlap 452578 CGAAGTAAGAAGAAA GAGAGAGTTAC GTCAT GTAGCTCTCTC TTTTTACATCAAGGC TERM 740 452578 - 452604 + T 100 -12.4 -4.65895 | opp_overlap 452578 CGAAGTAAGAAGAAA GAGAGAGTTACG TCA TGTAGCTCTCTC TTTTTACATCAAGGC TERM 741 452637 - 452626 - T 70 -5.8 -4.48221 | overlap 452628 CATCAAGGCAGAAAA GGTG GTAA CACC AAACAACGTACCGAG Aflv_0415 453132 - 452608 - | Membrane-associated phospholipid phosphatase TERM 742 453226 - 453181 - R 71 -4.2 -4.91987 | gap 1, opp_overlap 453194 453220, overlap 453185 453194 AAGTCAATAATAAAA CAATGTAAAAATACCACGC TTATTTGTC GCGTGGTTTGTTTAC-TTG AAGTGATTTATAATA TERM 743 453194 - 453214 + r 73 -5.4 -4.56702 | opp_overlap 453194 453185 453181 AACAATGTAAAAATA CCACGC TTATTTGTC GCGTGG TTTGTTTACTTGAAG Aflv_0416 453730 - 453200 - | Isoleucine patch superfamily protein Aflv_0417 453807 - 454631 + | Lysophospholipase, alpha-beta hydrolase superfamily TERM 744 454911 - 454925 + GF 75 -10 -3.10164 | TGATCCGACTGACTT TCGTGC GTT GCACGA TTCAATGATCCATGC TERM 745 455156 - 455140 - gf 72 -4.3 -4.8236 | overlap 455142 CATGTAAAAAAAGAA GAGCGCA TTC CGCGCTT GAAGCAATGGTTCGC TERM 746 455154 - 455142 - gf 71 -6.9 -4.0057 | overlap 455140 TGTAAAAAAAGAAGA GCGCA TTC CGCGC TTGAAGCAATGGTTC Aflv_0418 454597 - 455676 + | hypothetical protein Aflv_0419 455633 - 456283 + | Endonuclease, Uma2 family (restriction endonuclease fold) TERM 747 456323 - 456289 - T 88 -8.7 -4.71828 | opp_overlap 456294, overlap 456294 ATTCCACTAACAAAA CAAAAGTAGCGATGG AGATG CAATCGCTACTTTTT TATCTCTTCTCAATC TERM 748 456318 - 456294 - T 93 -8.6 -5.28831 | opp_overlap 456294, overlap 456289 ACTAACAAAACAAAA GTAGCGATGG AGATG CAATCGCTAC TTTTTTATCTCTTCT TERM 749 456294 - 456318 + T 95 -8.6 -5.48787 | opp_overlap 456294 456289 ACTAACAAAACAAAA GTAGCGATGG AGATG CAATCGCTAC TTTTTTATCTCTTCT Aflv_0420 456898 - 456323 - | SAM-dependent methyltransferase TERM 750 456834 - 456790 - G 78 -7.2 -4.41348 | gap 1, opp_overlap 456779, overlap 456774 GTTCCGCTAAATAAA GCG-TATCGTGGCCGTTGC CTATCGTT GCATCGACGACGATATCGC CCTCTTTGACTGCTA Aflv_0421 457854 - 456895 - | Radical SAM superfamily enzyme Aflv_0422 457964 - 458233 + | hypothetical protein Aflv_0423 458244 - 458384 + | hypothetical protein TERM 751 458386 - 458416 + T 100 -15.5 -3.11579 | opp_overlap 458376 458385, overlap 458384 458382 ATAATGAAACGTAAT TTCCCCACTCGGA CATGC TCCGGGTGGGGGA TCGTTTAGTTTTGCT Aflv_0424 459203 - 458421 - | hypothetical protein TERM 752 458874 - 458886 + g 71 -4.1 -4.8743 | GAGAGTTATTTTAGA TAGTG TCG CGCTA TTTGTTTCTTTTAAA TERM 753 459758 - 459734 - H 77 -8.5 -3.84246 | GCGTTAATGATGAAA GTGAGTGCACG ATT CGTGCGCTAAC AAGGGTGGTACCGCG TERM 754 459781 - 459807 + H 100 -12.3 -5.95286 | opp_overlap 459780 459781, overlap 459772 GTACCGCGGGAGAAT CCTCTCGTCCC TTTTT GGGATGGGAGG TTTTTTGTTTTTCAT TERM 755 459929 - 459919 - g 84 -5.4 -5.27476 | overlap 459914 GGGAAGAAAATAAAA CGTT TAA AACG ACAGAAGACGACGGG TERM 756 461864 - 461850 - g 80 -5 -5.18561 | CAAACAGTGAAAAAA GTAACC GAA GATTAC GAAGCGCTTCGTTTC leuS 459858 - 462275 + | Leucyl-tRNA synthetase TERM 757 462284 - 462308 + G 82 -8.5 -4.25104 | opp_overlap 462284 AAATTAATGTACAAA GCCTCTCGC ACATGTG GCGGGGGGC TTTTGCTAAAGAAAG Aflv_0426 462262 - 462630 + | Rhodanese-related sulfurtransferase TERM 758 462677 - 462637 - T 83 -9.9 -3.89695 | opp_overlap 462641 462648, overlap 462632 462641 CTTTTATAAATAGAA GGAACCAATAAGATCGC TTGATCG GCGATCTTATTGGTTTG CATACATAGCAGCAT TERM 759 462673 - 462641 - T 100 -15.1 -3.60035 | opp_overlap 462641 462648, overlap 462637 462632 TATAAATAGAAGGAA CCAATAAGATCGC TTGATCG GCGATCTTATTGG TTTGCATACATAGCA TERM 760 462641 - 462673 + T 100 -15.8 -3.6682 | opp_overlap 462641 462637 462632, overlap 462648 TATAAATAGAAGGAA CCAATAAGATCGCT TGATC GGCGATCTTATTGG TTTGCATACATAGCA Aflv_0427 463941 - 462667 - | Predicted flavoprotein TERM 761 464734 - 464720 - g 82 -8.6 -4.29049 | GAACTATTAAAACAA GATCGT GGC ACGATC CATATGTCATTAAAA Aflv_0428 464033 - 465658 + | Polysaccharide biosynthesis protein TERM 762 465668 - 465638 - T 88 -4 -5.7946 | opp_overlap 465640 465641 465643 465646, overlap 465643 TTTTTAAGAAAAAAA GAAAAGAAGGCTGT GTC ATAGCCTTCTCCTT TGTATTAGAAGTCGC TERM 763 465643 - 465663 + T 75 -10.5 -3.11182 | opp_overlap 465638 465643, overlap 465641 465640 465646 AAGAAAAAAAGAAAA GAAGGCTGT GTC ATAGCCTTC TCCTTTGTATTAGAA TERM 764 465663 - 465643 - T 100 -8.3 -5.64328 | opp_overlap 465643 465641 465640 465646, overlap 465638 AAGAAAAAAAGAAAA GAAGGCTGT GTC ATAGCCTTC TCCTTTGTATTAGAA Aflv_0429 465993 - 465673 - | hypothetical protein TERM 765 465886 - 465874 - G 73 -9.1 -3.5394 | overlap 465878 AAATCCCGGTGTAAA CGGAG AGC CTCCG TAATACGGCATGCCC Aflv_0430 466043 - 466765 + | RNA pseudouridine synthase TERM 766 466789 - 466763 - T 76 -2.2 -5.5208 | opp_overlap 466764 466769, overlap 466765 GGAGAAGACAAAAAA TAGGAACCTG TATCGCT CAGGTTCCGT CTATATCCATGTCGT TERM 767 466787 - 466765 - T 86 -9.2 -4.38219 | opp_overlap 466764 466769, overlap 466763 AGAAGACAAAAAATA GGAACCTG TATCGCT CAGGTTCC GTCTATATCCATGTC Aflv_0431 467025 - 466804 - | Transcription regulator DeoR family Aflv_0432 467187 - 468599 + | Zinc-dependent metallopeptidase TERM 768 468620 - 468659 + F 95 -11.6 -4.7219 | opp_overlap 468623 468624 468629, overlap 468623 468624 TCCAAAAATATGTTA TAATGAAAAGTGCCGTCG CTCA TGACGGTACTTTTCGTCA TTTTATATTGATATG TERM 769 468623 - 468656 + F 91 -13.3 -3.26743 | opp_overlap 468623 468624 468629, overlap 468620 468624 AAAAATATGTTATAA TGAAAAGTGCCGTCG CTCA TGACGGTACTTTTCG TCATTTTATATTGAT TERM 770 468655 - 468624 - f 81 -11.7 -2.62851 | opp_overlap 468623 468620 468624, overlap 468623 468629 AAAATATGTTATAAT GAAAAGTGCCGTC GCTCAT GACGGTACTTTTC GTCATTTTATATTGA TERM 771 468624 - 468655 + F 95 -14.6 -2.54961 | opp_overlap 468624 468623 468629, overlap 468623 468620 AAAATATGTTATAAT GAAAAGTGCCGTCG CTCA TGACGGTACTTTTC GTCATTTTATATTGA TERM 772 468650 - 468629 - f 73 -5.8 -4.49389 | opp_overlap 468624 468623 468620, overlap 468624 468623 ATGTTATAATGAAAA GTGCCGTC GCTCAT GACGGTAC TTTTCGTCATTTTAT Aflv_0433 468686 - 469837 + | Maltose permease, MFS type TERM 773 470271 - 470248 - g 84 -6.1 -5.02476 | gap 1, opp_overlap 470249 470250 470253, overlap 470250 ACATTGGCGAAAAAA TG-GAACGGA TCGTT TCCGTTCTCA CTTGAAACATATCCG Aflv_0434 469834 - 470400 + | 2'-5' RNA ligase lrgA 470423 - 470800 + | Putative effector of murein hydrolase LrgA, holin family lrgB 470797 - 471468 + | Putative effector of murein hydrolase LrgB TERM 774 471933 - 471943 + G 70 -2.6 -5.01732 | TATTATTATGACGTA TATT TAA AATA TTTTTTGCAACGCTT TERM 775 471981 - 471992 + G 71 -3 -5.06414 | ACATACTTATGTATG TACA AGCC TGTA TTTTTATTGAAAAAA TERM 776 472020 - 472008 - g 80 -4.8 -5.08824 | opp_overlap 472008 TTTTTATTGAAAAAA GCTC CTGTC GAGC TTAATACGATTTTGA Aflv_0437 471504 - 472460 + | hypothetical protein TERM 777 472446 - 472471 + F 79 -5.5 -4.95854 | gap 1, opp_overlap 472448 ATTGAAGAAGTGGAA GAGGCTGACG AATGAAG CGT-AGCCTC TTTTTCAATTTTTTA Aflv_0438 472671 - 474791 + | Type II secretory pathway, pullulanase TERM 778 475282 - 475260 - g 76 -7.7 -4.18494 | gap 1 TATGCTGAGTTAAAA GCGCACCCGA TCGT TCGGG-ACGC ATTGACATTTTTAGA TERM 779 475629 - 475604 - g 100 -14.9 -4.63107 | opp_overlap 475609 ACGAAACAACGAAAA GGAAATGCAAC GATT GTTGCATTTCC TTGAACATGTGCTAC TERM 780 475609 - 475624 + G 74 -7.6 -3.91352 | opp_overlap 475604 ACAACGAAAAGGAAA TGCAAC GATT GTTGCA TTTCCTTGAACATGT Aflv_0439 474873 - 475649 + | Phosphotransferase, choline kinase family enzyme Aflv_0440 475916 - 475641 - | hypothetical protein TERM 781 476581 - 476571 - gH 75 -2.6 -5.19251 | GAATATGAACAAAAA TTTT CAG AAAA AGGAAATCCGATTTA Aflv_0441 475890 - 476633 + | Predicted SAM-dependent methyltransferase TERM 782 476622 - 476644 + FH 100 -5.6 -6.14618 | opp_overlap 476622 GTGAAGTATCGAAAA CCTATGTC ATAATCA GGCATAGG TTTTTTTCTTTTCTG Aflv_0442 476680 - 477552 + | Zn-dependent hydrolase, glyoxylase family TERM 783 477573 - 477554 - T 85 -9.3 -4.23104 | opp_overlap 477554 TTAAACGTCAATAAA CCCAAGC GGCTTT GCTTGGG TTTTACAATTTTCTT TERM 784 477554 - 477573 + T 89 -10 -4.30559 | opp_overlap 477554 TTAAACGTCAATAAA CCCAAGCG GCTT TGCTTGGG TTTTACAATTTTCTT Aflv_0443 477878 - 477576 - | Uncharacterized small secreted protein Aflv_0444 477979 - 479046 + | Cellulase M related protein Aflv_0445 479059 - 479586 + | Inosine/xanthosine triphosphatase TERM 785 479736 - 479757 + G 70 -7.3 -3.75884 | overlap 479732 GATTATACGTTTTAT GCGGTCGAT CGCG ATCGATTGC TTGATTTATTTGCGG Aflv_0446 479571 - 479909 + | Thioredoxin Aflv_0447 479893 - 480705 + | hypothetical protein Aflv_0448 480702 - 481310 + | EMAP domain RNA-binding protein TERM 786 481306 - 481330 + F 100 -14.3 -5.67063 | GTCAACCATTTTTCA GCTGACTTCCG TCA CGGCAGTCAGC TTTTTTTGTGGTAAA Aflv_0449 481488 - 483548 + | DNA segregation ATPase FtsK/SpoIIIE TERM 787 484207 - 484184 - g 76 -8.1 -4.17048 | opp_overlap 484183 484188, overlap 484188 TGGTGGGGAAAACAA GGCATGGGG ACGATG CCGCATGCC CTCATTCAATTGTTT Aflv_0450 483590 - 484729 + | Nicotinic acid phosphoribosyltransferase TERM 788 484765 - 484740 - f 100 -13.5 -4.75308 | opp_overlap 484740 AGTAACACGGAAAAA CTGATAGAAGA ACGT TCTTCTATCAG TTTTTCTTATCATCG TERM 789 484740 - 484765 + F 100 -13.5 -5.22006 | opp_overlap 484740 AGTAACACGGAAAAA CTGATAGAAGA ACGT TCTTCTATCAG TTTTTCTTATCATCG TERM 790 485530 - 485544 + G 74 -4.2 -5.055 | opp_overlap 485530 TACAAAAAATACAAG CGAAAG TTC CTGTCG TTTTTTACGGGTTCG murC 484890 - 486191 + | UDP-N-acetyl muramate-alanine ligase TERM 791 486189 - 486228 + T 81 -11.9 -2.85606 | gap 1, opp_overlap 486196, overlap 486196 CAGTCGGTTCATGTA TAAA-AAAGCAACTATGA TTCGC TCATAGTTGCTTTCTTTA TCTGCTCATATGTAA TERM 792 486196 - 486220 + T 93 -11.6 -4.64048 | opp_overlap 486196, overlap 486189 TTCATGTATAAAAAA GCAACTATGA TTCGC TCATAGTTGC TTTCTTTATCTGCTC TERM 793 486220 - 486196 - T 100 -11.6 -5.28176 | opp_overlap 486196 486189 TTCATGTATAAAAAA GCAACTATGA TTCGC TCATAGTTGC TTTCTTTATCTGCTC Aflv_0452 486535 - 486200 - | Thioredoxin Aflv_0453 486845 - 486516 - | Uncharacterized conserved protein, involved in general stress response TERM 794 486628 - 486662 + g 78 -4.2 -5.1356 | opp_overlap 486628 GAAGGAAGCGGAATA GGGATCGAGGAGAA CGGCTTT TGCTCCTCTTTCCC TTTTTGTTGCTCCAC Aflv_0454 487250 - 486858 - | Uncharacterized conserved membrane or secreted protein, involved in general stress response (DUF948) TERM 795 487155 - 487165 + g 73 -5.4 -4.70879 | overlap 487145 487164 AACGTGTTGTAACGT CGTT TGC AACG TTTTTAACGTTTGGA ampS 487350 - 488495 + | Aminopeptidase TERM 796 488536 - 488493 - T 100 -15.1 -4.4595 | gap 1, opp_overlap 488503, overlap 488503 CCAGAAAACTTAAAA TAAAGAAAAAGCAACTATGA CTCGC TCATAGTTGCTTTTTCTT-A TGCCAAACAATTTCA TERM 797 488503 - 488527 + T 100 -11.6 -5.18726 | opp_overlap 488493 488503 TAAAATAAAGAAAAA GCAACTATGA CTCGC TCATAGTTGC TTTTTCTTATGCCAA TERM 798 488527 - 488503 - T 100 -11.6 -5.59962 | opp_overlap 488503, overlap 488493 TAAAATAAAGAAAAA GCAACTATGA CTCGC TCATAGTTGC TTTTTCTTATGCCAA Aflv_0456 490674 - 488518 - | FtsA-like ATPase fused to uncharacterized domain aroA 490816 - 491907 + | 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase TERM 799 491934 - 491915 - f 82 -12.2 -3.00986 | opp_overlap 491915, overlap 491912 AAGCATAGCAAATTA GCTGGTGA GTGT TCACCAGC TTTTCTTATGAATTT TERM 800 491915 - 491934 + F 100 -12.2 -4.81863 | opp_overlap 491915 491912 AAGCATAGCAAATTA GCTGGTGA GTGT TCACCAGC TTTTCTTATGAATTT TERM 801 492249 - 492238 - g 82 -2.2 -5.65513 | TAGCAAGTAAAAAAA CAAC GACA GTCG GCGTCATTATTCCGG ccpA 491988 - 493058 + | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 802 493119 - 493150 + T 71 -5.2 -4.49377 | gap 1, opp_overlap 493122, overlap 493122 GTGAACAAACATAGA GAAGGGTGT-CCG CTACTTT CGGAACACCCTTG TTATTTTATTATAAG TERM 803 493122 - 493147 + T 76 -6.9 -4.33214 | gap 1, opp_overlap 493122, overlap 493119 AACAAACATAGAGAA GGGTGT-CCG CTACTTT CGGAACACCC TTGTTATTTTATTAT acuC 494358 - 493159 - | Histone deacetylase family protein, involved in acetoin utilization TERM 804 493209 - 493222 + gT 85 -2.3 -5.75478 | GCTGAAGTGCTTTCA TGACC GTTT GGGCA TTTTTTTCTGTAATT acuB 494957 - 494328 - | Acetoin utilization protein (CBS, ACT domains) Aflv_0461 495624 - 494992 - | Acetyltransferase (GNAT family), involved in acetoin utilization TERM 805 497076 - 497066 - g 78 -5.4 -4.94222 | opp_overlap 497066 AATAATCCACAAAAA TACG AAT CGTA CTTTTTACCGGGGGA acsA 495788 - 497509 + | Acyl-coenzyme A synthetase TERM 806 497502 - 497542 + T 83 -12.1 -3.23296 | opp_overlap 497504 497515, overlap 497503 497515 ACTTATCAACAATGG AAGATTAAAAAAATCGGGC ATG GCCCGATTTTTTTAATTAG TTGATGACTGTTCTT TERM 807 497503 - 497541 + T 95 -15.6 -2.53255 | opp_overlap 497504 497515, overlap 497502 497515 CTTATCAACAATGGA AGATTAAAAAAATCGGGC ATG GCCCGATTTTTTTAATTA GTTGATGACTGTTCT TERM 808 497540 - 497504 - T 100 -16.9 -3.30203 | opp_overlap 497503 497502 497515, overlap 497515 TTATCAACAATGGAA GATTAAAAAAATCGGGC ATG GCCCGATTTTTTTAATT AGTTGATGACTGTTC TERM 809 497515 - 497529 + T 100 -11.4 -5.66868 | opp_overlap 497504 497515, overlap 497503 497502 GGAAGATTAAAAAAA TCGGGC ATG GCCCGA TTTTTTTAATTAGTT TERM 810 497529 - 497515 - T 100 -11.4 -5.63374 | opp_overlap 497515 497503 497502, overlap 497504 GGAAGATTAAAAAAA TCGGGC ATG GCCCGA TTTTTTTAATTAGTT Aflv_0463 500351 - 497535 - | Membrane carboxypeptidase (penicillin-binding protein) fused to uncharacterized domain TERM 811 497804 - 497818 + g 70 -7.1 -3.76474 | overlap 497802 CTTGTTCATGATGTT CGCTC CAAAC GAGCG TATTTCCTTTTTGAT TERM 812 498630 - 498648 + g 72 -7.4 -3.94846 | GAACTTCCCACCATT CGCAAATG TAG CATATGCG TTTACATTTTCCTCA TERM 813 499880 - 499902 + g 72 -6.3 -4.39877 | opp_overlap 499879 GCTGTGTTAATGTAC TTCCTCCAC TACGT GTAGAGGAA TTTGTTGCTTCTTGA TERM 814 500696 - 500672 - H 90 -9.4 -4.38712 | gap 1, opp_overlap 500672 GGTACCGCGATAAAA CTCGTCCCTTC GTGT GAAGG-ACGAG TTTTTTGTTTGGATT TERM 815 500672 - 500696 + H 100 -9.4 -5.67283 | gap 1, opp_overlap 500672 GGTACCGCGATAAAA CTCGTCCCTTC GTGT GAAGG-ACGAG TTTTTTGTTTGGATT tyrS 500705 - 501994 + | Tyrosyl-tRNA synthetase TERM 816 501999 - 502022 + T 100 -15.4 -5.26875 | opp_overlap 501999 GTTATGCATAAAAAA TCCTCTCTGC TTCA GCAGAGAGGA TTTTTTCATTAACGA TERM 817 502022 - 501999 - T 100 -15.4 -5.28176 | opp_overlap 501999 GTTATGCATAAAAAA TCCTCTCTGC TTCA GCAGAGAGGA TTTTTTCATTAACGA rpsD 502690 - 502031 - | Ribosomal protein S4 TERM 818 504034 - 504023 - g 71 -4.4 -4.86862 | TCGAAAAAATTAAAA CATC GTTT GATG CGGAAGAAGTCGGTT Aflv_0466 503005 - 504861 + | Signal transduction diguanylate cyclase (GAF-GAF-GGDEF domains) TERM 819 504864 - 504883 + T 80 -7.8 -4.46254 | opp_overlap 504864 GCAAGAATATTAAAA GAGGCCAA TTCA TCGGCCTC TTTCTTATATGTTGA TERM 820 504883 - 504864 - T 91 -10 -4.49937 | opp_overlap 504864 GCAAGAATATTAAAA GAGGCCAA TTCA TCGGCCTC TTTCTTATATGTTGA Aflv_0467 505382 - 504888 - | Methionine-(R)-sulfoxide reductase hisJ 506208 - 505387 - | Histidinol phosphate phosphatase TERM 821 506264 - 506254 - H 71 -4 -5.00616 | opp_overlap 506254 TTTTTGCTCAAAAAA TGTT GCT AACA TGGTATCATAAAATC TERM 822 506813 - 506796 - g 70 -2.6 -5.0538 | overlap 506811 CGTCACGTGAAAAAA GCGATG CTTACC CAACGC CATACGTTTGGGCGT ezrA 506319 - 508031 + | Negative regulator of FtsZ ring formation (frequency and position) TERM 823 508014 - 508063 + T 90 -8.7 -4.90778 | opp_overlap 508020 508025, overlap 508025 CGCATCCGCCAGTGG TTAAAAGAAAACGAGTGAAAGGG GTGA CCCTTTCACTCGTTTTAGCTTGC TTTTCTTTCGGTACG TERM 824 508057 - 508020 - T 100 -18.7 -4.09685 | opp_overlap 508014 508025, overlap 508025 CGCCAGTGGTTAAAA GAAAACGAGTGAAAGGG GTGA CCCTTTCACTCGTTTTA GCTTGCTTTTCTTTC TERM 825 508025 - 508052 + T 100 -18.6 -4.34711 | opp_overlap 508020 508025, overlap 508014 GTGGTTAAAAGAAAA CGAGTGAAAGGG GTGA CCCTTTCACTCG TTTTAGCTTGCTTTT TERM 826 508052 - 508025 - T 100 -18.6 -5.07652 | opp_overlap 508025 508014, overlap 508020 GTGGTTAAAAGAAAA CGAGTGAAAGGG GTGA CCCTTTCACTCG TTTTAGCTTGCTTTT braB 509467 - 508055 - | Branched-chain amino acid permease TERM 827 510098 - 510113 + G 71 -8.2 -3.51708 | overlap 510094 GATGGAGTGCAAGGT GCGGCG AAGG TGCCGC TTCATTTAAAACGTG nifZ 509561 - 510712 + | Cysteine desulfurase Aflv_0472 510709 - 511902 + | Thiamine biosynthesis ATP pyrophosphatase sspD 511958 - 512149 + | Small acid-soluble spore protein (alpha/beta-type SASP) TERM 828 512187 - 512166 - g 100 -10.2 -4.4009 | opp_overlap 512166 TGTTAGGTGACAAAA CTCGGTAG TTCATC CTACCGAG TTTTTATTTTTAAAA TERM 829 512166 - 512187 + G 100 -10.2 -5.61881 | opp_overlap 512166 TGTTAGGTGACAAAA CTCGGTAG TTCATC CTACCGAG TTTTTATTTTTAAAA TERM 830 512215 - 512245 + G 78 -4.2 -5.23316 | opp_overlap 512215 AAATTTTTAGAAAAG TTATACAAAATTAT TCG ATTTTTTTGTATAA TTTTTTCGTATCATA Aflv_0474 512157 - 513854 + | Acetyl-coenzyme A synthetase TERM 831 513866 - 513917 + T 84 -8.2 -4.77757 | gap 1, opp_overlap 513878 513885, overlap 513870 513874 513885 GTAATATATTCCGCT CTCACATATATAGTAAAAAGAGGCG TAA CGCCTCTTTTTACAAAA-ATGTTCG TTTTACTTTTTCCCA TERM 832 513870 - 513913 + T 91 -12 -3.82764 | gap 1, opp_overlap 513878 513885, overlap 513866 513874 513885 TATATTCCGCTCTCA CATATATAGTAAAAAGAGGCG TAA CGCCTCTTTTTACAAAA-ATG TTCGTTTTACTTTTT TERM 833 513874 - 513910 + T 91 -13.9 -2.66007 | opp_overlap 513878 513885, overlap 513870 513866 513885 TTCCGCTCTCACATA TATAGTAAAAAGAGGCG TAA CGCCTCTTTTTACAAAA ATGTTCGTTTTACTT TERM 834 513906 - 513878 - T 100 -19.1 -3.05022 | opp_overlap 513874 513870 513866 513885, overlap 513885 GCTCTCACATATATA GTAAAAAGAGGCG TAA CGCCTCTTTTTAC AAAAATGTTCGTTTT TERM 835 513899 - 513885 - T 95 -11.4 -4.86133 | opp_overlap 513874 513870 513866 513885, overlap 513878 CATATATAGTAAAAA GAGGCG TAA CGCCTC TTTTTACAAAAATGT TERM 836 513885 - 513899 + T 93 -11.4 -4.57837 | opp_overlap 513885 513878, overlap 513874 513870 513866 CATATATAGTAAAAA GAGGCG TAA CGCCTC TTTTTACAAAAATGT Aflv_0475 514685 - 513903 - | NAD kinase Aflv_0476 514832 - 515482 + | hypothetical protein TERM 837 515859 - 515849 - g 87 -4.6 -5.49579 | TGAGAAAAAAGAAAA GCCG CAG CAGC AACATGAAGCACCAG Aflv_0477 515457 - 515888 + | hypothetical protein tpx 515966 - 516472 + | Thiol peroxidase TERM 838 516481 - 516503 + F 93 -9.9 -5.08367 | opp_overlap 516476, overlap 516489 ACAATAATGATTTGA GGCTATCTC AAAAA GGGATAGCC TTTTTCGTTTATATT TERM 839 516983 - 516972 - g 86 -3 -5.72622 | CTGACAAATAAAAAA GTAA AAAG TTAC GGAGCGGATGCAGAC Aflv_0479 516558 - 517532 + | Adenine-specific DNA methylase ackA 517690 - 518883 + | Acetate kinase TERM 840 518888 - 518905 + T 90 -9.1 -5.02074 | opp_overlap 518888 ACTTAGCATAAAAAA GGTGTCC GTAT GGGCACC TTTTTTAAAAGATAA TERM 841 518905 - 518888 - T 89 -6.9 -5.31877 | opp_overlap 518888 ACTTAGCATAAAAAA GGTGTCC GTAT GGGCACC TTTTTTAAAAGATAA TERM 842 519058 - 519043 - T 72 -9 -3.36878 | opp_overlap 519037 GTTACCCACGCAGAA CCAAGC GATT GCTTGG TTCGAGCTCTCCTCG TERM 843 519126 - 519140 + T 85 -11.4 -3.27525 | overlap 519121 GACATTTCGCCGTTG CCCGCA CGA TGCGGG TTGCCTTTAGGCGAA Aflv_0481 519492 - 519178 - | hypothetical protein TERM 844 520573 - 520555 - g 77 -3.9 -5.1675 | TCATTGAGCAAAAAA TTGCAGA AGTCA TCTACAA CGGCCTTTGGTTTTC TERM 845 520692 - 520703 + G 73 -5.8 -4.53636 | overlap 520694 GCGATTGTAGAAGGT CGGA AATC TCCG TTTTCGTTATATGAT argG 519639 - 520847 + | Argininosuccinate synthase TERM 846 520889 - 520917 + G 86 -9 -4.25283 | gap 1, opp_overlap 520889 AAAACAGCAGCACAA TGGGTCGATG-AC TTTG GTGCATCGATCCA TTTTGATCAACAACT TERM 847 521713 - 521698 - g 80 -2.5 -5.54907 | GCCACAAAAGAAAAA CCCAG ATATGG CTGAG CTCATTCGTGGGAAA argH 520844 - 522220 + | Argininosuccinate lyase TERM 848 522246 - 522207 - Tf 93 -9.4 -4.84353 | opp_overlap 522210 522212, overlap 522208 522210 522212 AGAAAGCAAAACAAA TGATAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTGTTT GTTCAGGTGTGCGTA TERM 849 522245 - 522208 - Tf 95 -12.9 -3.48172 | opp_overlap 522210 522212, overlap 522207 522210 522212 GAAAGCAAAACAAAT GATAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTGTT TGTTCAGGTGTGCGT TERM 850 522210 - 522243 + TF 100 -17.7 -4.19678 | opp_overlap 522208 522207 522210 522212, overlap 522212 AAGCAAAACAAATGA TAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTG TTTGTTCAGGTGTGC TERM 851 522243 - 522210 - Tf 100 -15.5 -3.28108 | opp_overlap 522210 522212, overlap 522208 522207 522212 AAGCAAAACAAATGA TAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTG TTTGTTCAGGTGTGC TERM 852 522241 - 522212 - Tf 100 -18.1 -3.18088 | opp_overlap 522210 522212, overlap 522210 522208 522207 GCAAAACAAATGATA GAGGCATAAAAGC AAAC GCTTTTATGCCTC TGTTTGTTCAGGTGT TERM 853 522212 - 522241 + TF 100 -18.1 -3.69469 | opp_overlap 522212 522210 522208 522207, overlap 522210 GCAAAACAAATGATA GAGGCATAAAAGC AAAC GCTTTTATGCCTC TGTTTGTTCAGGTGT uspA 522817 - 522233 - | Nucleotide-binding protein, UspA family TERM 854 522537 - 522564 + gF 71 -9.9 -2.62184 | GTTCGATCGTATGCT TCGATGGTCGC AAATGA GCGAACATCGA TAATGTGCGAAAGGA TERM 855 522603 - 522616 + gF 78 -5.3 -5.00616 | GCATCGTTCCTTTTG GCAAT TTCA ATTGC TTTTTTAAACGCCCA Aflv_0485 522791 - 522919 + | hypothetical protein TERM 856 522905 - 522930 + FH 90 -10.5 -4.42464 | opp_overlap 522905 522909, overlap 522910 GAACAAGAGGATGAA CAAAGGAGGCG ATGA TGCCTCTTTTG TTTCTTTCGAGCATT TERM 857 522910 - 522925 + FH 89 -6.8 -5.18866 | opp_overlap 522909 522905, overlap 522905 AGAGGATGAACAAAG GAGGCG ATGA TGCCTC TTTTGTTTCTTTCGA Aflv_0486 523013 - 523774 + | Dehydrogenase TERM 858 523794 - 523772 - T 100 -12.8 -4.18494 | CATCGTTATCGAAAA TAGGCTGCCA TCG TGACAGCCTA TACGATTTGTAGTTC Aflv_0487 524853 - 523792 - | Xaa-Pro aminopeptidase Aflv_0488 524992 - 525669 + | Metal-dependent hydrolase Aflv_0489 525744 - 527054 + | Predicted transcriptional regulator containing CBS domains TERM 859 527046 - 527077 + T 100 -12.5 -4.22591 | gap 1, opp_overlap 527052 TGTCAGTTGCTTGAA CGACAATAGGCTGC GTACG GCAGCCTATT-TCG TTTCTTCCGCTTCTT TERM 860 527072 - 527052 - T 88 -11.2 -3.50853 | opp_overlap 527046 TTGCTTGAACGACAA TAGGCTGC GTACG GCAGCCTA TTTCGTTTCTTCCGC Aflv_0490 527369 - 527070 - | hypothetical protein Aflv_0491 527469 - 528416 + | Bifunctional oligoRNAse and pAp phosphatase TERM 861 528402 - 528439 + T 86 -9.3 -4.43477 | opp_overlap 528399 528407 528411, overlap 528407 GATTTAAATGAAGTA TGCAAGCAACAGTAGAG CGCT TTCTACTGTTGCTTTAA TTTTAGTTCAATAGA TERM 862 528407 - 528434 + T 100 -13.6 -4.27062 | opp_overlap 528399 528407 528411, overlap 528402 AAATGAAGTATGCAA GCAACAGTAGAG CGCT TTCTACTGTTGC TTTAATTTTAGTTCA TERM 863 528434 - 528407 - T 91 -12.9 -3.15252 | opp_overlap 528407 528402, overlap 528399 528411 AAATGAAGTATGCAA GCAACAGTAGA GCGCTT TCTACTGTTGC TTTAATTTTAGTTCA Aflv_0492 528925 - 528425 - | hypothetical protein TERM 864 528639 - 528670 + g 73 -7.4 -4.19817 | gap 1, opp_overlap 528630, overlap 528642 CGAAAAGTTGTATAC GTG-TCGATGCCATA AGA TTTGGCATTGATCAC TTTTACATCAATGGA TERM 865 528794 - 528805 + g 71 -2.2 -5.19328 | TTGTTGCATTTTGAG CAGG CGCA CTTG TTTTTCTTGTAAAAT Aflv_0493 529269 - 528922 - | hypothetical protein TERM 866 529258 - 529232 - G 73 -5.2 -4.63932 | overlap 529219 529235 TAGCTTTGAATAAAA GCAGGTAAAAAC GCT GTTTTTATCTCC ATCTCGCTCACTCCT TERM 867 529509 - 529519 + G 74 -4.6 -4.83615 | GAAAACGTCCTATAT GGCG TTA TGCC TTTTTATGAGGCGTG TERM 868 529565 - 529553 - g 71 -9.1 -3.37522 | AGCGCATGGAATTAA GCCGA TTA TCGGC ATGATGGCAACGATT TERM 869 529645 - 529628 - g 73 -2.7 -5.14563 | overlap 529631 529632 GTTGTTAGCAAAAAA TAACGAC GGGT ATCGTCA ACTTGTCCATATTGC dnaE 529362 - 532595 + | DNA polymerase III, alpha subunit Aflv_0495 532686 - 533939 + | Malic enzyme TERM 870 534235 - 534223 - gf 71 -3.4 -4.94058 | TTAATCGAAACAAAA GTTC TTATC GAAC GAATATGTTTGCAGC Aflv_0496 533908 - 534528 + | Transcriptional regulator, GntR family accD 534598 - 535470 + | Acetyl-CoA carboxylase beta subunit TERM 871 535709 - 535723 + G 70 -5.6 -4.30576 | AAACTTTTTCGAATG CCACGG TGA CCGTTG TTTTGGTGATGACGA accA 535455 - 536432 + | Acetyl-CoA carboxylase alpha subunit TERM 872 536437 - 536456 + F 89 -5.7 -5.4833 | opp_overlap 536437 CGGTTATGTAAAAAA GGTCATC CATGTC GATGGCC TTTTTTATTACATGA TERM 873 536456 - 536437 - f 72 -3.5 -5.08824 | opp_overlap 536437 CGGTTATGTAAAAAA GGTCATC CATGTC GATGGCC TTTTTTATTACATGA TERM 874 536570 - 536598 + F 76 -9.1 -3.65991 | opp_overlap 536575, overlap 536575 ACCTTCGTGTTATCT TAAAGTAAGAGGT CAT ACTTCTTATTTTA TTCTGTTAAAGAGGT TERM 875 536575 - 536593 + F 84 -6.8 -4.90381 | opp_overlap 536575, overlap 536570 CGTGTTATCTTAAAG TAAGAGGT CAT ACTTCTTA TTTTATTCTGTTAAA TERM 876 536977 - 536964 - g 72 -8.1 -3.76383 | AAAAAGTTAACAGAA CACGG TTAT CCGTG TGTCGGTGTGCCGGG pfkA 536622 - 537581 + | 6-phosphofructokinase TERM 877 537928 - 537918 - gf 71 -6.8 -4.08651 | ATTTCAATGAAAGAA GTGC TTG GCAC ACCAGAAAAATTTTC TERM 878 538522 - 538533 + GF 75 -5.8 -4.72272 | CGGAGGCAAGCGATG TGGC GAAC GCCA TTTTTGATGGAACAG Aflv_0500 537591 - 539390 + | Pyruvate kinase fused to PEP-utilizers swivelling domain TERM 879 539388 - 539419 + GT 100 -17.6 -4.08394 | opp_overlap 539391 539395, overlap 539391 539395 CATGCGAGCGTGCTA TAATAAAGAAGGGG ACAT CCCCTTCTTTATTA TTTTGGGAGGGATGT TERM 880 539416 - 539391 - gT 100 -14.9 -3.29511 | opp_overlap 539391 539388 539395, overlap 539395 GCGAGCGTGCTATAA TAAAGAAGGGG ACAT CCCCTTCTTTA TTATTTTGGGAGGGA TERM 881 539391 - 539416 + GT 100 -14.9 -4.17048 | opp_overlap 539391 539395, overlap 539388 539395 GCGAGCGTGCTATAA TAAAGAAGGGG ACAT CCCCTTCTTTA TTATTTTGGGAGGGA TERM 882 539412 - 539395 - gT 100 -11.3 -4.30719 | opp_overlap 539395 539391 539388, overlap 539391 GCGTGCTATAATAAA GAAGGGG ACAT CCCCTTC TTTATTATTTTGGGA TERM 883 539395 - 539412 + GT 100 -11.3 -4.67697 | opp_overlap 539391 539395, overlap 539391 539388 GCGTGCTATAATAAA GAAGGGG ACAT CCCCTTC TTTATTATTTTGGGA TERM 884 539648 - 539662 + GT 71 -5 -4.50859 | GCATACCAAGCGATG CTCTAT TAG ATGGAG TTTGTATTTTAGTTG Aflv_0501 539344 - 539829 + | Protein affecting phage T7 exclusion by the F plasmid TERM 885 539829 - 539855 + T 93 -8.1 -5.44721 | opp_overlap 539832, overlap 539832 TTACATTCGAAAATA AAAGCATAAGC TCGTC GCTTATGCTTC TTTTTTTCCGATAAT TERM 886 539852 - 539832 - T 93 -9.8 -5.09259 | opp_overlap 539829 539832 CATTCGAAAATAAAA GCATAAGC TCGTC GCTTATGC TTCTTTTTTTCCGAT TERM 887 539832 - 539852 + T 93 -9.8 -4.80853 | opp_overlap 539832, overlap 539829 CATTCGAAAATAAAA GCATAAGC TCGTC GCTTATGC TTCTTTTTTTCCGAT Aflv_0502 540965 - 539847 - | Predicted permease TERM 888 541481 - 541509 + G 70 -7.7 -3.59867 | opp_overlap 541481, overlap 541478 541477 GTATTGCTTATGTAA TCATGAAAATA GTAGATG TATTTTCATGA TTGATTACTTTTTTA Aflv_0503 541012 - 541509 + | hypothetical protein citZ 541771 - 542889 + | Citrate synthase TERM 889 542913 - 542936 + F 91 -9.7 -4.62783 | opp_overlap 542902 ACAACGGTTGCTCAA GGTGAGAAA CTCGCC TTTCTCACC TTTTTACACTACATG icd 542954 - 544243 + | Isocitrate dehydrogenase mdh 544267 - 545205 + | Malate dehydrogenase TERM 890 545239 - 545206 - f 86 -10.6 -3.81022 | gap 1, opp_overlap 545207 545213, overlap 545213 AAAGTGTTACAATAA TA-AAAAATTCGGGG TGACT CCCCGAATTTTTGTA TATGGTCAAACAAAG TERM 891 545207 - 545237 + F 81 -11.3 -2.94099 | opp_overlap 545206 545213, overlap 545213 AAGTGTTACAATAAT AAAAAATTCGGGG TGACT CCCCGAATTTTTG TATATGGTCAAACAA TERM 892 545213 - 545231 + F 93 -10.3 -5.05601 | opp_overlap 545206 545213, overlap 545207 TACAATAATAAAAAA TTCGGGG TGACT CCCCGAA TTTTTGTATATGGTC TERM 893 545231 - 545213 - f 100 -10.3 -5.68489 | opp_overlap 545213 545207, overlap 545206 TACAATAATAAAAAA TTCGGGG TGACT CCCCGAA TTTTTGTATATGGTC Aflv_0507 545260 - 545730 + | Acyl dehydratase TERM 894 545734 - 545747 + F 100 -5.9 -6.12458 | opp_overlap 545734 GATAACTTTTAAAAA GGGGC TTTT GCCTC TTTTTTGTTTTTTTC phoP 545752 - 546537 + | DNA-binding response regulator, OmpR family (REC-wHTH domains) TERM 895 547104 - 547090 - g 70 -5.6 -4.25437 | AAATCAATATACAAA GCCGAT TGA AGCGGC AACAAAAGTAGCGAT phoR 546530 - 548293 + | Signal transduction histidine kinase TERM 896 548396 - 548420 + F 100 -5.7 -6.04324 | opp_overlap 548407 GATTGTCTTGGAATA GGCGAGGAC AACGAAC GTTCTCGTC TTTTTTCTTTTTTGG TERM 897 548740 - 548753 + G 76 -6.7 -4.57073 | opp_overlap 548739, overlap 548744 548745 548747 CGCCACCGGAATTAT CGGAA CAGT TTCCG TTTTTACGCGAACTG polA 548487 - 551114 + | DNA polymerase I TERM 898 551879 - 551869 - g 75 -8.2 -3.90744 | TGGGCGTGTAAATAA GCCG TGC CGGC GATGCGGGGAGCCCA mutM 551132 - 551953 + | Formamidopyrimidine-DNA glycosylase Aflv_0512 552020 - 552643 + | hypothetical protein TERM 899 553079 - 553098 + G 82 -7.8 -4.54727 | AAATTCAACTTCGGC GCCTTTGC GAAC GCAATGGC TTTTCGTTTGAAGAA Aflv_0513 552646 - 553257 + | Dephospho-CoA kinase TERM 900 553239 - 553264 + F 100 -6.9 -6.32976 | ACGCTTAGTTGAGTG GGGTATCCT TGAAAAAT AGGATGCCC TTTTTTTATTTTTTT gapB 553365 - 554393 + | Glyceraldehyde-3-phosphate dehydrogenase TERM 901 554391 - 554413 + F 100 -16.4 -4.86033 | opp_overlap 554394 ACGGTTGCGATGTCA TAACGCTGGG GTT CCCAGCGTTA TTTTTCTACCCATTT TERM 902 554410 - 554394 - f 95 -13.7 -3.32844 | opp_overlap 554391 GTTGCGATGTCATAA CGCTGGG GTT CCCAGCG TTATTTTTCTACCCA speD 554634 - 555008 + | S-adenosylmethionine decarboxylase TERM 903 555022 - 555042 + F 100 -7.6 -5.71983 | opp_overlap 555022, overlap 555014 AATAAACTGTAAAAA GAGGTGTA GATTA TGCACCTC TTTTTTTATCATTCA TERM 904 555042 - 555022 - f 75 -5.4 -4.7339 | opp_overlap 555014 555022 AATAAACTGTAAAAA GAGGTGTA GATTA TGCACCTC TTTTTTTATCATTCA TERM 905 555168 - 555150 - g 70 -3.8 -4.90869 | ATGAGCAACTAAAAA GCCGTTAT TAC AAAACGAC GCAATCTGCTGCATT Aflv_0516 555080 - 555472 + | hypothetical protein Aflv_0517 555535 - 556005 + | Predicted transcriptional regulator (Zn-ribbon and ATP-cone domains) TERM 906 556018 - 555991 - f 74 -6.4 -4.42047 | gap 1, opp_overlap 555998, overlap 555988 ATTAAAAAAGAACAA GGAGAAAGGGCAT AAT ATGCTCTTT-TCC ATATGAAGAAGGTCG TERM 907 555998 - 556012 + F 71 -6.4 -4.2349 | opp_overlap 555991 555988 AAGAACAAGGAGAAA GGGCAT AAT ATGCTC TTTTCCATATGAAGA TERM 908 556089 - 556099 + G 79 -8.2 -4.08216 | CCGATATATTGTCCA CGCC AAT GGCG TTTTAAGCGAACTAG TERM 909 556467 - 556453 - g 70 -5.8 -4.35327 | opp_overlap 556452 GTAGGAAAAACGAAA TTTCAA AAG TTGAAA AAGTTTTTTTCTGAT dnaB 556021 - 557436 + | Replication initiation/membrane attachment protein dnaI 557444 - 558379 + | Primosome component, helicase loader TERM 910 558940 - 558960 + G 75 -10.5 -2.80344 | overlap 558939 CAAGAATATCAAGCG TTCGTGCAA TTG TTGCGCGAA ATTGTTGCATCACGA Aflv_0520 558442 - 559296 + | hypothetical protein TERM 911 559535 - 559558 + F 100 -7.4 -6.09196 | opp_overlap 559535 GAACCACGAAACCAA CTCGTCCC TCGTTTTT GGGACGGG TTTTTTTATTTTCAA TERM 912 560186 - 560174 - g 70 -3.5 -4.8048 | CGTCCACAGGAAAAA TTAAA GAA TTTAA ACTGTTAAGTGTGGC TERM 913 561480 - 561462 - g 73 -5.2 -4.65078 | ATATGGTGAACAAAA GAGCGAAA CGA TGCCGCTC GATGCGTTCGTTGAC thrS 559591 - 561522 + | Threonyl-tRNA synthetase TERM 914 561650 - 561632 - f 73 -6.8 -4.25388 | overlap 561634 561645 561648 TAGAGTAAAAGTAAA TACTTGTT TGA AACAAGCA GAAGCACCCGCTTCT TERM 915 561728 - 561752 + F 100 -10.7 -5.60689 | ATGTTGTGAGTGAGA CGTGTGGGTGT GTT GTGCCCACACG TTTTTTGTTGTGTGC infC 561789 - 562331 + | Translation initiation factor 3 (IF-3) TERM 916 562485 - 562473 - g 79 -3.3 -5.40873 | AACACAAAAACAAAA GCGTA AAC TTCGC AAAGCAACACTTGTA rpmI 562351 - 562551 + | Ribosomal protein L35 rplT 562570 - 562929 + | Ribosomal protein L20 Aflv_0525 564224 - 562992 - | Transposase TERM 917 563748 - 563715 - G 71 -8.9 -3.39955 | AAAGGCAAAAGGGAA CGCTTGGGTCATCGT ATGA ACCATGAGCCAAACG AGAGAATGCCCCCAG TERM 918 563829 - 563839 + g 78 -5.4 -5.03145 | GTGTGTTGCCCGTGA CGAA GGC TTCG TTTTTTGGCAAATTG TERM 919 564309 - 564336 + H 93 -8.5 -5.24129 | opp_overlap 564309 AAGTAATAAAGGAAA TGACCATTCTC CCTTGA GGGGATGGTCA TTTTTTGTAAGAGGG dutB 564322 - 564849 + | dUTPase (dimeric) Aflv_0527 564896 - 565990 + | Cellulase M related protein TERM 920 565997 - 566015 + F 100 -10.3 -5.626 | opp_overlap 565996 TTTGATTAACAGGAG CCGACTC GAACA GAGTCGG TTTTTTTATCAAATA araR 566107 - 567204 + | Transcriptional regulator araR (HTH fused to periplasmic-binding domain) araD 567292 - 567987 + | L-ribulose-5-phosphate 4-epimerase araB 568003 - 569697 + | Ribulose kinase TERM 921 570855 - 570882 + G 72 -9.8 -2.76263 | overlap 570853 570876 CAGCCCGCCTCGTGT TTGACGGCGGCG AGGG CGCGGCGGTCAA TGCTTCGCTGATCGA araA 569714 - 571216 + | L-arabinose isomerase TERM 922 571969 - 571959 - g 70 -5.4 -4.4261 | CTGTCAACATTAAAA TGGA AGT TCCA GAAAAAGTTATTGTT Aflv_0532 571298 - 573121 + | Glycosyl hydrolase TERM 923 573424 - 573414 - g 91 -6.8 -5.45802 | GGTCCAAAAGAAAAA CGTC CAC GACG GCTTGACTTGGCATG abfA 573144 - 574652 + | Alpha-L-arabinofuranosidase TERM 924 574751 - 574782 + F 100 -13.2 -6.09196 | opp_overlap 574751 CCAAGAGTCAAAAAA CTAACTCGAAGCAC ACAT GTGTTTTGAGTTAG TTTTTTTCTTTTCAG TERM 925 574782 - 574751 - f 90 -8.8 -5.1615 | opp_overlap 574751 CCAAGAGTCAAAAAA CTAACTCGAAGCAC ACAT GTGTTTTGAGTTAG TTTTTTTCTTTTCAG TERM 926 574786 - 574801 + F 79 -4.8 -5.13741 | GTTTTGAGTTAGTTT TTTTCT TTTC AGAAAA TTTTTATTGACTTAA TERM 927 577040 - 577030 - f 72 -3.2 -5.17744 | ACAGATCAAGAAAAA CGGT TTC ACCA TTTGACCCTCAAACC msmR 577058 - 578125 + | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 928 578119 - 578150 + F 100 -13.2 -4.55023 | opp_overlap 578119 578123, overlap 578123 TGCTTATACGGTAAA GAAATAGCTTTCGC TTTG GTGAGAGCTATTTC TTTTATGATGTTACG TERM 929 578150 - 578119 - f 73 -8.8 -3.63627 | opp_overlap 578119 578123, overlap 578123 TGCTTATACGGTAAA GAAATAGCTTTCGC TTTG GTGAGAGCTATTTC TTTTATGATGTTACG TERM 930 578123 - 578146 + F 84 -8.2 -4.81357 | opp_overlap 578119 578123, overlap 578119 TATACGGTAAAGAAA TAGCTTTCGC TTTG GTGAGAGCTA TTTCTTTTATGATGT TERM 931 578470 - 578456 - g 70 -3.6 -4.81851 | ATTTAAATGGAAAAA CATATA AAC TACATG CAAACGAAAACAAAA TERM 932 578498 - 578487 - g 78 -2.2 -5.56372 | AAACGAAAACAAAAA CCAT CTGC ACGG TGGAAAGAAAGGCTT TERM 933 578796 - 578777 - g 95 -8 -4.92777 | AACACGAATTAAAAA TAAAAAGC GATC GCTTTTTA CCGTTAGATCATGAA TERM 934 579212 - 579187 - g 70 -5.6 -4.32034 | gap 1, opp_overlap 579186 579182 579187 579203 TTACGAGCAGGAAAA GTGTA-TTCGT CGACC ACGAAATACAC ATTTCGTTTGGCACA galM 578134 - 579234 + | Aldose 1-epimerase (mutarotase) TERM 935 579240 - 579283 + T 100 -13.5 -3.87505 | gap 1, opp_overlap 579251, overlap 579241 579251 ACATGAATGACGGTG ACCGTAAAAAA-TAGCCTTC AACGC GAAGGCTATTTTTTTACGGC TTCTTCTAATGTCGT TERM 936 579241 - 579282 + T 100 -17 -2.9178 | gap 1, opp_overlap 579251, overlap 579240 579251 CATGAATGACGGTGA CCGTAAAAAA-TAGCCTTC AACGC GAAGGCTATTTTTTTACGG CTTCTTCTAATGTCG TERM 937 579271 - 579251 - T 93 -10.5 -5.0538 | opp_overlap 579241 579240 579251 GGTGACCGTAAAAAA TAGCCTTCA ACG CGAAGGCTA TTTTTTTACGGCTTC TERM 938 579251 - 579271 + T 100 -9.8 -5.43866 | opp_overlap 579251, overlap 579241 579240 GGTGACCGTAAAAAA TAGCCTTC AACGC GAAGGCTA TTTTTTTACGGCTTC sspI 579487 - 579269 - | Small acid-soluble spore protein SspI TERM 939 579581 - 579571 - g 78 -5.4 -4.93595 | overlap 579572 ATAAAAATGGAAAAA GCAA CAT TTGC TGGTGGGTGTTTTTG msrA 579526 - 580086 + | Peptide methionine sulfoxide reductase Aflv_0541 580068 - 580832 + | SpoU family rRNA methylase TERM 940 581114 - 581136 + F 100 -11.3 -5.76237 | overlap 581106 GGTACCGCGAGTGCA CTCGTCCCT TATTC AGGGGCGAG TTTTTTATTTATATA pheS 581170 - 582204 + | Phenylalanyl-tRNA synthetase alpha subunit TERM 941 582556 - 582541 - g 73 -7.5 -4.21408 | AACTTTAAAATTAAA CGCGC CAAATT GCGCG GGGAAGAATCGAACG pheT 582220 - 584634 + | Phenylalanyl-tRNA synthetase beta subunit TERM 942 584673 - 584642 - T 100 -13 -4.19735 | opp_overlap 584642 GCGGGTAAAACGAAA CCCCCATCTGATGC ATAA GCATTGGATGGGGG TTTTTATGTGGTGAG TERM 943 584642 - 584673 + T 100 -17.4 -5.00895 | opp_overlap 584642 GCGGGTAAAACGAAA CCCCCATCTGATGC ATAA GCATTGGATGGGGG TTTTTATGTGGTGAG TERM 944 584826 - 584792 - T 80 -10.2 -3.76174 | opp_overlap 584802 584804, overlap 584790 584803 AAATCTATGAAAAGA CCTTTTTAAATTCCTT TTT AAGGTATTTAAAGAGG ATGATGGGATCGGAT TERM 945 584950 - 584926 - T 83 -4.9 -5.2422 | opp_overlap 584926 584933 584942 AAGGACAGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTCCC Aflv_0544 586068 - 585013 - | Transposase Aflv_0545 586309 - 586656 + | hypothetical protein TERM 946 586729 - 586717 - T 70 -3.3 -5.00234 | TAAAAAAGAAACAAA CAGGG TAC CCCTT ATGTAACGTGGAGCT TERM 947 587459 - 587425 - T 80 -10.2 -3.76174 | opp_overlap 587435 587437, overlap 587423 587436 AAATCTATGAAAAGA CCTTTTTAAATTCCTT TTT AAGGTATTTAAAGAGG ATGATGGCATCGGAT TERM 948 587562 - 587538 - T 79 -4.9 -5.07053 | opp_overlap 587538 587545 AAGGACGGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTATC Aflv_0546 589073 - 587625 - | Transposase TERM 949 589481 - 589505 + H 93 -5.8 -5.61881 | opp_overlap 589483 AATATGCATTTACCA GACTTGTC ACAATCTTC GACAAGTC TTTTTATTTTTCAGG comQ 589585 - 590475 + | Competence regulatory protein ComQ comX 590494 - 590652 + | DNA-directed RNA polymerase specialized sigma factor, ComX Aflv_0549 590656 - 592917 + | Signal transduction histidine kinase, contains N-terminal PDZ domain TERM 950 592965 - 592977 + GF 74 -7.7 -3.9122 | CACATTTTAATCGTC GACGA TCA TCGTC TTGTTTGCGAAGGTA comA 592857 - 593594 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 951 593596 - 593620 + F 100 -16.5 -5.27023 | ATCATATGTTGTGAA TGCCTTCACCG GAT CGGTGAGGGCA TTTTCTTTTTGAAGT TERM 952 593637 - 593672 + F 70 -9.8 -2.71144 | gap 1, opp_overlap 593668 TTTCTTTTTGAAGTC CGCCATTTCGT-GTCGG TAT CCGACAAAAAAATGGCG TGGTTCGACACCATG TERM 953 593685 - 593668 - f 83 -3.4 -5.626 | opp_overlap 593637 593673 TATCCGACAAAAAAA TGGCGT GGTTCG ACACCA TGTTGGCGGTGAAAG Aflv_0551 593768 - 594166 + | hypothetical protein TERM 954 594283 - 594314 + F 71 -6.6 -4.09739 | AATTGAGATCATGTC CCTTTCTTTTAGGA GCAT TCCTGTTAGAAAGG TTTTCAGGGACTTGA Aflv_0552 595968 - 597329 + | ABC-type sugar transport system, periplasmic component Aflv_0553 597330 - 597980 + | VanZ family membrane protein, implicated in glycopeptide antibiotics resistance Aflv_0554 598120 - 598563 + | Permease, involved in lantibiotic resistance Aflv_0555 599181 - 598621 - | Endonuclease, Uma2 family (restriction endonuclease fold) Aflv_0556 599306 - 599752 + | Transcriptional regulator, MarR family TERM 955 599889 - 599904 + G 70 -7.6 -3.61715 | AGAAGGTTATTCGTC TTCGCT TGCT AGCGAA TTATTAAAAGAAGTA TERM 956 600403 - 600413 + G 86 -6.8 -4.92757 | TATATCGTGTCGCAA GCGA TTG TCGC TTTTCTTGTTGATCG TERM 957 602399 - 602413 + G 72 -7.2 -4.04023 | overlap 602387 TGCTTGCAGGAATTG CGATTA TTT TAATCG TTCTTCTTCGTTCGT TERM 958 602536 - 602547 + G 71 -2.2 -5.1848 | overlap 602532 TATGAAGGCGTGAAC TGGG CTGT TCCA TTTTTTGCGTTCGTT Aflv_0557 599749 - 602871 + | Predicted transporter of the RND superfamily TERM 959 602872 - 602893 + F 91 -10.1 -4.52047 | opp_overlap 602872 CCATTTCTGAAATAA GAGCGGGTG TCGA TGCCCGCTC TTTTGTGATATAATG TERM 960 602893 - 602872 - f 77 -8.7 -3.91716 | opp_overlap 602872 CCATTTCTGAAATAA GAGCGGG TGTCGATG CCCGCTC TTTTGTGATATAATG TERM 961 603356 - 603334 - f 70 -8.4 -3.34522 | opp_overlap 603334 ACATCGTTGAAGTAA CCACGAACGC ATG ACGTTGGTGG TTGGGTAGCTTTCAA zapA 603526 - 603819 + | Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) Aflv_0559 603800 - 604351 + | Membrane protein connecting MutS with cell-division Z-ring TERM 962 604355 - 604373 + F 76 -4.6 -5.14563 | opp_overlap 604355 604344 TATATGGCGTAAAAA CTTCTC CGTCCGA GAGAAG TTTTTTCGTCGAAAG TERM 963 604373 - 604355 - f 71 -5.3 -4.59109 | opp_overlap 604355, overlap 604344 TATATGGCGTAAAAA CTTCTCC GTCCG AGAGAAG TTTTTTCGTCGAAAG TERM 964 604433 - 604419 - gf 100 -5.6 -6.12458 | opp_overlap 604421, overlap 604421 604422 GAAAAAAATAAAAAA GAGGCG ATT CGCCTG CTTGAAACGATCGCT TERM 965 604431 - 604421 - gf 91 -8.2 -4.6155 | opp_overlap 604421, overlap 604419 604422 AAAAAATAAAAAAGA GGCG ATT CGCC TGCTTGAAACGATCG Aflv_0560 604401 - 606110 + | DNA polymerase IV fused to PHP family metal-dependent phosphoesterase TERM 966 606928 - 606951 + GF 84 -5.3 -5.27335 | ACAATTATTGAGAAC GTCGAGTTG CTTGCT CAGCTTGAC TTTTTGTTTGCAAAG mutSB 605965 - 608475 + | DNA mismatch repair protein, MutSB Aflv_0562 608487 - 608894 + | hypothetical protein Aflv_0563 608907 - 608990 + | hypothetical protein TERM 967 608994 - 609009 + F 100 -6.8 -6.04324 | opp_overlap 608994 TTTTTTGCATAAAAG GGTGTC AGCA GGCACC TTTTTTATTTTTTAA TERM 968 610459 - 610448 - g 82 -3 -5.47218 | GTCGACCGAAAAAAA GATA TGAT TATC GCAAGCGGTTATAAC lcfA 609086 - 610762 + | Acyl-CoA synthetase TERM 969 610815 - 610836 + F 88 -8.9 -4.56597 | opp_overlap 610815 TCTTTAAAATAAAAA TATGAATGA TTAT TCATTCATA TTTTTGAAAGGGAGA TERM 970 610836 - 610815 - f 95 -8.9 -5.45802 | opp_overlap 610815 TCTTTAAAATAAAAA TATGAATGA TTAT TCATTCATA TTTTTGAAAGGGAGA TERM 971 611393 - 611379 - g 71 -2.1 -5.20534 | ATGAATGAACAAAAA TACGA TCTTG TCGCA TTGGCGAAACCGGTT Aflv_0565 610860 - 611441 + | Transcriptional regulator, TetR/AcrR family Aflv_0566 611480 - 612247 + | Enoyl-CoA hydratase etfB 612263 - 613036 + | Electron transfer flavoprotein, beta subunit TERM 972 613189 - 613206 + G 75 -8.5 -3.8186 | overlap 613179 TCGGAGCGAGCGTTC GCTCATT AGCA AATGAGC TTATTGCTTACGGTG etfA 613044 - 614030 + | Electron transfer flavoprotein, alpha subunit TERM 973 614031 - 614051 + F 93 -9.7 -5.08255 | opp_overlap 614031 AAAGTACATTCATAA GGCAGAGCG TGA TGCTTTGCC TTTTCTTTTCAGCAT trxA 614177 - 614491 + | Thioredoxin TERM 974 614498 - 614519 + F 100 -13.1 -5.82388 | opp_overlap 614500 CATTTATAATTGACA TACCTCGGA GACA TCCGAGGTA TTTTTTTTGAAATTT TERM 975 614517 - 614500 - f 81 -11.3 -2.96711 | opp_overlap 614498 TTTATAATTGACATA CCTCGGA GACA TCCGAGG TATTTTTTTTGAAAT TERM 976 614595 - 614568 - f 70 -8.6 -3.40403 | opp_overlap 614574 CGTTCTCTACTATAA TGATAACGGTTA ATGA TAATCGTTATCA AAAAAGGGGGATACA TERM 977 615076 - 615058 - g 71 -4.6 -4.68655 | CAATTGCAAAAGAAA CTACAAAA AGA TGTTGTAG CGGCACTTGAAGCTG Aflv_0570 614617 - 615828 + | hypothetical protein TERM 978 615830 - 615862 + F 86 -12.1 -3.4178 | opp_overlap 615830 615837, overlap 615837 CTATTGTTCAATAAA CAGAAGAGCCGCG CATAACA CGCGGCTTTTTTG TTGTGATACAATAGT TERM 979 615862 - 615830 - f 85 -9.1 -4.16016 | opp_overlap 615830 615837, overlap 615837 CTATTGTTCAATAAA CAGAAGAGCCGCGCA TAA CACGCGGCTTTTTTG TTGTGATACAATAGT TERM 980 615855 - 615837 - f 79 -10.2 -3.56559 | opp_overlap 615830 615837, overlap 615830 TCAATAAACAGAAGA GCCGCGCA TAA CACGCGGC TTTTTTGTTGTGATA TERM 981 615837 - 615855 + F 100 -8.8 -5.58179 | opp_overlap 615837 615830, overlap 615830 TCAATAAACAGAAGA GCCGCG CATAACA CGCGGC TTTTTTGTTGTGATA Aflv_0571 615881 - 616855 + | Nucleoside-diphosphate-sugar epimerase Aflv_0572 616827 - 617762 + | hypothetical protein TERM 982 617850 - 617861 + GF 78 -4.4 -5.13137 | CGATTTTTGTTATAG GAAC GATG GTTC TTTTTCATTTATTTG TERM 983 619020 - 619036 + GF 74 -4.3 -4.85129 | overlap 619021 GTCATTTAGATGAGG GGGAGCG ATA CGTTCCG TTTTTCATGTATGGT Aflv_0573 617708 - 619198 + | Membrane-associated sulfatase family enzyme Aflv_0574 619195 - 619920 + | Glycosyltransferase TERM 984 619915 - 619937 + F 95 -9.2 -5.4505 | opp_overlap 619915 CATTCTGTTCAACAA CGCTAGAGAG TAG TTTTCTAGCG TTTTTTCTTGACAAG Aflv_0575 619979 - 620743 + | Uncharacterized conserved secreted or membrane protein TERM 985 621116 - 621081 - g 71 -4.1 -4.88407 | gap 1, opp_overlap 621089 621112 621114, overlap 621084 621085 621089 GTATGGAAGGAAAAA TGAGCAAATACGTCTC TAAAG GCGACGTATTTGG-CA TGGTCATGCATTCGT TERM 986 621113 - 621085 - g 74 -10.4 -2.58788 | opp_overlap 621089 621112, overlap 621084 621081 621089 GGAAGGAAAAATGAG CAAATACGTCTC TAAAG GCGACGTATTTG GCATGGTCATGCATT TERM 987 621291 - 621301 + G 78 -5.4 -5.0538 | overlap 621265 GAACGATGCGCGTAC CGTT AAA AACG TTTTTTAAAGTGACA Aflv_0576 620759 - 621676 + | High-affinity Fe2+ permease TERM 988 621697 - 621678 - f 83 -10.8 -3.69734 | opp_overlap 621678, overlap 621672 AACAAGTGATGTAAA GTACAAGG GGAG CCTTGTAC TTTTTTGCTTAGGAG TERM 989 621678 - 621697 + F 100 -10.8 -5.26875 | opp_overlap 621672 621678 AACAAGTGATGTAAA GTACAAGG GGAG CCTTGTAC TTTTTTGCTTAGGAG TERM 990 622442 - 622459 + GF 76 -2.7 -5.34555 | opp_overlap 622432 622445, overlap 622445 AATTACCGTTTTGGA AAAGGAT ATGT ATCCTTA TTTTTTATAATATCA TERM 991 622445 - 622456 + GF 72 -4.4 -4.74611 | opp_overlap 622432 622445, overlap 622442 TACCGTTTTGGAAAA GGAT ATGT ATCC TTATTTTTTATAATA Aflv_0577 621721 - 623121 + | hypothetical protein TERM 992 623671 - 623661 - gT 74 -4 -4.93079 | AAGAAAATAAACAAA TTGT TGA ACAA ATTACGCGATTTTTA uvrC 623072 - 624895 + | Excinuclease ABC subunit C TERM 993 624891 - 624910 + T 74 -9.3 -3.46285 | opp_overlap 624891, overlap 624884 TTCAAACGTATGAAA GCTGACC ATCATC GGTCAGC TTCATCTTTACGGTC TERM 994 624910 - 624891 - T 84 -10 -3.82097 | opp_overlap 624891 624884 TTCAAACGTATGAAA GCTGACCA TCAT CGGTCAGC TTCATCTTTACGGTC Aflv_0579 625342 - 624899 - | Predicted hydrocarbon binding protein (V4R domain) TERM 995 625047 - 625025 - G 82 -8.4 -4.24342 | opp_overlap 625021 CTGTTGAGCAAGAAA GCCCGCTTCA AGT TGAAACGTGC AATCTTCACTATAAT TERM 996 625776 - 625788 + G 95 -7.7 -5.08011 | overlap 625767 CTTTTATGGAGCAGC TACCG TTC CGGTA TTTTTTAGAAATTTT sdhC 625622 - 626230 + | Succinate dehydrogenase, cytochrome b subunit sdhA 626254 - 628014 + | Succinate dehydrogenase, flavoprotein subunit sdhB 628011 - 628772 + | Succinate dehydrogenase, Fe-S protein subunit TERM 997 628802 - 628780 - f 93 -7.6 -5.4756 | opp_overlap 628780, overlap 628797 AAGTGTAACAAAAAA GGTCGGCTCT TAA AGAGTCGGCC TTATGTTTCATAAAG TERM 998 628780 - 628802 + F 91 -12 -3.86252 | opp_overlap 628780 628797 AAGTGTAACAAAAAA GGTCGGCTCT TAA AGAGTCGGCC TTATGTTTCATAAAG Aflv_0583 628830 - 629279 + | Thioesterase superfamily enzyme gerE 629306 - 629575 + | Transcriptional regulator GerE family TERM 999 629575 - 629618 + F 72 -8.3 -3.60473 | gap 1, opp_overlap 629577 629582, overlap 629577 629582 GGAACTTGAACTATA GAGAGAACCGGCTCGCCT TTTTGTTTT AGGC-AGCCGGTTTTCTA TTGATTTGATGTATG TERM 1000 629577 - 629616 + F 80 -10.9 -3.3692 | gap 1, opp_overlap 629577 629582, overlap 629575 629582 AACTTGAACTATAGA GAGAACCGGCTCGCCT TTTTGTTTT AGGC-AGCCGGTTTTC TATTGATTTGATGTA TERM 1001 629582 - 629611 + F 83 -7.2 -4.76274 | gap 1, opp_overlap 629582 629577, overlap 629577 629575 GAACTATAGAGAGAA CCGGCTCGCCT TTTTGTTTT AGGC-AGCCGG TTTTCTATTGATTTG racE 629646 - 630482 + | Glutamate racemase TERM 1002 630485 - 630505 + F 100 -6.9 -5.94214 | opp_overlap 630485 TCAATTATCTTAAAA TCCTTCG CATTAGC CGAAGGA TTTTTTTGTTCTATT TERM 1003 630505 - 630485 - f 73 -6.9 -4.17023 | opp_overlap 630485 TCAATTATCTTAAAA TCCTTCG CATTAGC CGAAGGA TTTTTTTGTTCTATT TERM 1004 631420 - 631406 - g 70 -7.2 -3.74303 | AAAATGGAAAAGTAA CGTTAA ACT TTAACG AAGCGATTTATGGTA gerM 630574 - 631620 + | Spore germination protein GerM TERM 1005 631661 - 631679 + F 86 -10.3 -4.0031 | AAGATTCATCGTCGA GAGGCAG CATCC CTGCCTC TTATTTCGTGAACAT rph 631714 - 632481 + | Ribonuclease PH TERM 1006 632568 - 632550 - gf 79 -3 -5.40072 | opp_overlap 632550 TTGTTTTCAAAAAAA GGGATCGA CGT TCTCTCCC TCCTTGCCTATGATG TERM 1007 632935 - 632949 + GF 95 -2.8 -6.13503 | overlap 632937 TTGGTGAAAACGGTT TTGGGT ATG ATCCGA TTTTTTTTGTTCCTG Aflv_0588 632454 - 633089 + | Inosine triphosphate pyrophosphatase TERM 1008 633250 - 633264 + G 73 -7.1 -4.08394 | overlap 633262 TGTGCGAGGGAATTG CGACG ACGAA CGTCG TTTTCCAACCGATCT Aflv_0589 633086 - 633598 + | Predicted phosphoesterase TERM 1009 633623 - 633596 - f 86 -7.8 -4.88495 | gap 1, opp_overlap 633596 ACATATACAACAAAA TAGGGGCAA-GAA AAT TCCATCGCCCCTA TTGACTTTTTTCATA TERM 1010 633770 - 633791 + F 100 -10.9 -5.48213 | CCTGGGACGCTAGGA TCCTCTTGC ATGG GCAAGGGGA TTTTTATTTTACATG TERM 1011 633958 - 633979 + F 100 -10.9 -6.25578 | CCTGGGGTGCTAGGA TCCTCTTGC GTGG GCAAGGGGA TTTTTTTTGTTTAGT TERM 1012 634821 - 634803 - g 75 -6 -4.59773 | opp_overlap 634791 GTTCATCGTTAAAAA TGGTGTGT TAT ATACACCA CCAGGATACGTCGGG dat 634216 - 635118 + | Branched-chain amino acid aminotransferase TERM 1013 635371 - 635419 + G 89 -7.5 -5.00196 | gap 1, overlap 635412 GCGGGAAGGATGCAA GCCTTTTCGCCCCTTTGGTCCG CACGGA CTGAT-GGAGGGGTGAGAAGGC TTTTCTTATTTCACA ilvB 635365 - 637173 + | Acetolactate synthase large subunit ilvH 637167 - 637688 + | Acetolactate synthase small subunit TERM 1014 638066 - 638077 + G 78 -5.8 -4.8622 | overlap 638065 ATCGTTCCGCCAAGC GACG TTGA CGTC TTTTTAGTTGCACCA TERM 1015 638555 - 638534 - g 75 -2.3 -5.37593 | overlap 638535 GCGGAAATGAAAAAA GTGCTTGAA GATA TTCAAACAG GCAAGTTTGCGAAAG ilvC 637706 - 638731 + | Ketol-acid reductoisomerase TERM 1016 640197 - 640214 + G 82 -7.7 -4.44667 | opp_overlap 640188 GCAAAAGCATATATT CATGCGG TTAA TCGCATG TTTGTTATTGAAAAG leuA 638718 - 640262 + | 2-isopropylmalate synthase TERM 1017 640257 - 640245 - f 71 -6.2 -4.16937 | ATGAAAGAAGAACAA GCGC TTGCC GCGC AATAACAAAGGGGGA TERM 1018 641162 - 641146 - g 75 -3 -5.15634 | gap 1 TATTGCAGGAAAAAA CAAAGCG AATC CGCTT-G CAACGATTTTGTCAG leuB 640280 - 641389 + | Isocitrate/isopropylmalate dehydrogenase TERM 1019 642513 - 642499 - g 86 -2.7 -5.79588 | opp_overlap 642506 GTAAAAGGAAAAAAA GTCGC ACCGG GCGTC AGAGCGCTCGTCGTT leuC 641401 - 642816 + | 3-isopropylmalate dehydratase large subunit leuD 642828 - 643412 + | 3-isopropylmalate dehydratase small subunit TERM 1020 643428 - 643404 - f 100 -8.5 -5.86061 | opp_overlap 643404 GCCTACGAAAAAAAA CGCTCTTGACA TTT TGTCGAGGGCG TTTTTCGTTGAATTT TERM 1021 643404 - 643428 + F 100 -12.9 -4.90917 | opp_overlap 643404 GCCTACGAAAAAAAA CGCTCTTGACA TTT TGTCGAGGGCG TTTTTCGTTGAATTT TERM 1022 643887 - 643866 - g 71 -2.3 -5.09225 | gap 1, overlap 643869 AGTTTAGTGAAAAAA TGATTCGTTC ACA GTACGAA-CA ACAAGCAAAACAATA Aflv_0598 643496 - 644428 + | TPR repeats containing protein TERM 1023 644478 - 644491 + F 85 -3.9 -5.61881 | CCTACATATATGTAG TTCAT TTAC ATGAA TTTTTATTTTTGAAG tig 644523 - 645809 + | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) TERM 1024 645856 - 645814 - f 72 -9.2 -3.44146 | opp_overlap 645814 645822 645825, overlap 645818 645822 TTGTTGCATAATGAA TGGAGAAAGAACAAGGTGCA TCA CGTGCCTTGTTCTTTCCACA TATAGTCAAGTATGA TERM 1025 645814 - 645856 + F 77 -10.7 -2.80443 | opp_overlap 645814 645818 645822, overlap 645822 645825 TTGTTGCATAATGAA TGGAGAAAGAACAAGGTGC ATCAC GTGCCTTGTTCTTTCCACA TATAGTCAAGTATGA TERM 1026 645852 - 645818 - f 76 -10.8 -2.62043 | opp_overlap 645814 645822 645825, overlap 645814 645822 TGCATAATGAATGGA GAAAGAACAAGGTGCA TCA CGTGCCTTGTTCTTTC CACATATAGTCAAGT TERM 1027 645822 - 645848 + F 77 -9.5 -3.59738 | opp_overlap 645818 645814 645822, overlap 645814 645825 TAATGAATGGAGAAA GAACAAGGTGC ATCAC GTGCCTTGTTC TTTCCACATATAGTC TERM 1028 646287 - 646252 - g 82 -6 -5.06451 | GACGAGGCGAAAAAA GCGCTTTCTGTGGCAG TATA CAACCACTACAAGCGC ATTAATTCAAACAGT clpX 646003 - 647265 + | ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) TERM 1029 647263 - 647314 + F 100 -18.6 -4.69214 | gap 1, opp_overlap 647275, overlap 647275 AGAAAAACATCAGCG TAAATAGAAAAAGATCGATTTTCCG AAT CGGAAAGTCGATCTTTTT-TGTTTA TTTCTTTCTTCGCTC TERM 1030 647275 - 647303 + F 100 -16.9 -5.85425 | opp_overlap 647275, overlap 647263 GCGTAAATAGAAAAA GATCGATTTTCCG AAT CGGAAAGTCGATC TTTTTTGTTTATTTC TERM 1031 647303 - 647275 - f 100 -14.7 -5.19879 | opp_overlap 647275 647263 GCGTAAATAGAAAAA GATCGATTTTCCG AAT CGGAAAGTCGATC TTTTTTGTTTATTTC lonB 647308 - 649029 + | Lon-like ATP-dependent protease TERM 1032 649036 - 649062 + F 100 -16 -5.0538 | opp_overlap 649033 649032 649036 CGAATGTGAAAGCGA TCGGCTTCAACG GAG CGTTGAAGTCGA TTTTTTACGATGAAA TERM 1033 649062 - 649036 - f 91 -13.8 -2.66326 | opp_overlap 649036, overlap 649033 649032 CGAATGTGAAAGCGA TCGGCTTCAACG GAG CGTTGAAGTCGA TTTTTTACGATGAAA TERM 1034 649701 - 649677 - g 70 -2.7 -5.08088 | overlap 649680 AAGCTTGAAGAAAAA CAACGATTGCT TGA AGCGGTCGATG TGAAAGAGCGTGTGC TERM 1035 650646 - 650634 - g 80 -6.3 -4.85433 | ACAGAAATTGAAAAA TTGCA CAT TGCAA AAGAACATTTATTAC TERM 1036 651172 - 651162 - g 74 -6.8 -4.26076 | GGAGCGGTACCAAAA GACG GTC CGTC AGCAGGGATTACGAT lonA 649143 - 651467 + | Class III heat-shock ATP-dependent Lon protease TERM 1037 651659 - 651673 + G 89 -6.4 -5.27476 | ACATTGAACTTTTAT CGCATT AAC GATGCG TTTTATTTTGTTGAC ysxC 651464 - 652045 + | GTP-binding protein YscX, possible signaling factor TERM 1038 652041 - 652077 + T 84 -12.6 -2.96842 | opp_overlap 652050, overlap 652050 CATTGCAAAAATGGA TGTAAAAAATGTGGGT GATTG ACCCACATTTTTTGTA TAGTTATCCTTTTTT TERM 1039 652068 - 652050 - T 90 -8.9 -5.10497 | opp_overlap 652041 652050 AATGGATGTAAAAAA TGTGGGT GATTG ACCCACA TTTTTTGTATAGTTA TERM 1040 652050 - 652068 + T 95 -8.9 -5.42131 | opp_overlap 652050, overlap 652041 AATGGATGTAAAAAA TGTGGGT GATTG ACCCACA TTTTTTGTATAGTTA Aflv_0604 652581 - 652081 - | hypothetical protein TERM 1041 653083 - 653102 + G 73 -3.5 -5.07652 | GGTGAAACGCAAATT CTTGGGC AAGTGC GCACAAG TTTTCTTTTAGCGCA hemA 652732 - 654066 + | Glutamyl-tRNA reductase TERM 1042 654164 - 654199 + G 74 -6.9 -4.40333 | opp_overlap 654168, overlap 654165 654169 654171 TCGATTTTCTTCACC ACAACCGGAAGGCAA ACCGCA TTGCTTTCGGGTTGC TTTCTATTGTTTGGG TERM 1043 654165 - 654198 + G 77 -10.4 -3.23115 | opp_overlap 654168, overlap 654164 654169 654171 CGATTTTCTTCACCA CAACCGGAAGGCAA ACCGCA TTGCTTTCGGGTTG CTTTCTATTGTTTGG TERM 1044 654207 - 654225 + G 88 -3.2 -5.75538 | CGGGTTGCTTTCTAT TGTTTG GGGGATG CAAACA TTTTTCTTTTTTGCG TERM 1045 654268 - 654254 - g 73 -8.6 -3.58533 | opp_overlap 654254 CGAGAATGGTCGAAA CAGGAA GAT TTCCTG TTTTAACGCTTGCGG TERM 1046 654254 - 654268 + G 79 -8.6 -4.14392 | opp_overlap 654254 CGAGAATGGTCGAAA CAGGAA GAT TTCCTG TTTTAACGCTTGCGG hemX 654079 - 654894 + | ABC-type transport system involved in cytochrome c biogenesis, permease component TERM 1047 655684 - 655696 + G 70 -7.7 -3.61398 | GATGAAGATGCGATT GTGCT TAC AGCAC TTGTTGCAACACCGA hemC 654901 - 655842 + | Porphobilinogen deaminase (hydroxymethylbilane synthase) hemD 655843 - 656592 + | Uroporphyrinogen-III synthase hemB 656594 - 657568 + | Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) TERM 1048 658218 - 658230 + G 71 -4.7 -4.58283 | opp_overlap 658205, overlap 658216 658215 CATGGGGGTCGTTCC GCCAG AGC CGGGC TTTTTACAAGGGTTG hemL 657547 - 658863 + | Glutamate-1-semialdehyde aminotransferase TERM 1049 658850 - 658871 + F 100 -7.3 -5.64274 | gap 1, opp_overlap 658850 CGTTTGCGAAAATGA GCGATTGCCT GTA AGGC-GTCGC TTTTTTTATGCATAC TERM 1050 658982 - 659010 + G 86 -10.3 -3.86995 | opp_overlap 658979, overlap 658986 TTGAAGAAGCGATTG CTTTTCGACGTGA GCA TCACGTCGATCAG TTATTATCAATTTCA TERM 1051 658986 - 659006 + G 95 -14.1 -2.69073 | opp_overlap 658979, overlap 658982 AGAAGCGATTGCTTT TCGACGTGA GCA TCACGTCGA TCAGTTATTATCAAT spoVID 658927 - 659835 + | Stage VI sporulation protein D (LysM domain) Aflv_0612 659845 - 660759 + | Aminoglycoside phosphotransferase family enzyme Aflv_0613 660968 - 660744 - | hypothetical protein TERM 1052 660962 - 660979 + g 100 -9.9 -5.62045 | CTTTTCGTATATTTA GCTCCAT TCAT ATGGAGC TTTTTTATTATATGT TERM 1053 661273 - 661301 + H 100 -14 -5.86976 | opp_overlap 661272 661271 661269, overlap 661264 GTACCGCGAAAGAGT CTCCTTTCGTCC TTTTC GGATGAAAGGAG TTTTTTATTTTGTAA TERM 1054 663797 - 663783 - g 71 -4.3 -4.86033 | overlap 663795 AAACGCCTAGAAAAA GAGTT ACAAA AACTC GACCAAGAAGTCGAG TERM 1055 663812 - 663795 - g 95 -7.7 -4.92363 | overlap 663783 AAAGAGTTACAAAAA CTCGACC AAGA AGTCGAG CGCGTGCAAAAGAAA Aflv_0614 661326 - 663953 + | Valyl-tRNA synthetase TERM 1056 663966 - 663988 + F 91 -12.1 -3.87149 | opp_overlap 663966 663972 TAGTTTTATGATGAA GACGAATCC ATTTC GGATTCGTC TTTCACTTTAATAGA TERM 1057 663988 - 663966 - f 85 -12.8 -3.21416 | opp_overlap 663966, overlap 663972 TAGTTTTATGATGAA GACGAATCCA TTT CGGATTCGTC TTTCACTTTAATAGA TERM 1058 664127 - 664101 - g 71 -8.8 -3.28783 | TTAAAACGAATGGAA TGGATGATGGAA AAG CTCGATCATCCA GAGCGTCGCATTAAA TERM 1059 664691 - 664704 + G 71 -6.7 -4.09685 | AGTATATGTGCTCGG TCGTG ATTT CACGA TTTTCGCCCATGAGC TERM 1060 664826 - 664814 - g 74 -4.8 -4.76892 | ACATCAAGTGAAAAA CGCA TCCCT TGCG CTCATGGTCGCCGAC folC 664017 - 665321 + | Folylpolyglutamate synthase TERM 1061 665546 - 665533 - g 78 -2.3 -5.55664 | TCACCATTAAAAAAA GAGCT TGGA AGCAC GTCGAATATAAGCGT TERM 1062 668227 - 668213 - g 74 -4.2 -5.01732 | AACTGCTTGAAAAAA CGGTGA CAG TAACCG TTCAAGCGATCCCAG Aflv_0616 665380 - 668802 + | Bacterial surface protein containing Ig-like domains TERM 1063 668850 - 668870 + F 88 -8.3 -4.72272 | opp_overlap 668831 GACGCTATTTGTCAT CATCAGCTT GCT AAGCGGATG TTTTTCATCGAAAGA Aflv_0617 668950 - 669669 + | Ankyrin repeats containing protein TERM 1064 669658 - 669677 + T 72 -3.5 -5.14682 | opp_overlap 669658, overlap 669653 CAACTAAAGGAAAAA GGAGCCA AGTAGC TAGCTCC TTTTCTTTATTGTAC TERM 1065 669677 - 669658 - T 83 -6.4 -5.04222 | opp_overlap 669658 669653 CAACTAAAGGAAAAA GGAGCCAA GTAG CTAGCTCC TTTTCTTTATTGTAC Aflv_0618 671321 - 669684 - | hypothetical protein TERM 1066 671283 - 671271 - G 79 -3.3 -5.31275 | overlap 671273 671274 TCCGATGATAAAAAA GACGG TGA CCGTT AACATAACGAGCACG Aflv_0619 671903 - 671334 - | Uncharacterized conserved secreted protein, predicted component of Type II secretory pathway Aflv_0620 672519 - 671887 - | Uncharacterized conserved protein, predicted component of Type II secretory pathway Aflv_0621 672469 - 673752 + | Uncharacterized conserved secreted protein, predicted component of Type II secretory pathway Aflv_0622 673740 - 674495 + | PRC-barrel domain containing protein Aflv_0623 674485 - 675753 + | Uncharacterized conserved secreted, VanW family pilB 675750 - 677411 + | Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB pilT 677413 - 678456 + | Tfp pilus assembly protein, pilus retraction ATPase PilT TERM 1067 678535 - 678514 - g 85 -4.3 -5.55664 | opp_overlap 678532, overlap 678516 GGACGAGTAAAAAAA GGGACGATG GTTG CTTCGTCGC GTCGCGATGTGATGA TERM 1068 679278 - 679294 + G 73 -3.6 -5.0133 | GCTTGCTCGTATGAC GCGCAC ATTAA GTTCGC TTTTTTCAAGCGCTG pulF 678463 - 679674 + | Type II secretory pathway component PulF pulG 679750 - 680289 + | Type II secretory pathway pseudopilin PulG TERM 1069 680540 - 680507 - g 70 -7.5 -3.86015 | gap 1, opp_overlap 680508, overlap 680508 680513 TATGTGTTGCAGAAA GGGAAATGTCGCGC GTGTTCA GCGCG-CATTTCCT TTGTTTATCCGTTCG TERM 1070 680508 - 680539 + G 100 -11 -4.59089 | gap 1, opp_overlap 680508 680507 680513 ATGTGTTGCAGAAAG GGAAATGTCGCGC GTGTTCA GCGCG-CATTTCC TTTGTTTATCCGTTC TERM 1071 680539 - 680508 - g 79 -11 -2.91395 | gap 1, opp_overlap 680508, overlap 680507 680513 ATGTGTTGCAGAAAG GGAAATGTCGCGC GTGTTCA GCGCG-CATTTCC TTTGTTTATCCGTTC TERM 1072 680887 - 680908 + G 90 -2.3 -6.02914 | gap 1, overlap 680868 680888 CGGTTTGGCTCTTGG GGCCAA-ACT AAC AGTGTTGGCG TTTTTTTTATCTACG pulO 680330 - 681079 + | Type II secretory pathway, prepilin signal peptidase PulO TERM 1073 681960 - 681946 - g 70 -7.1 -3.745 | overlap 681944 TGATCGATTAAAAGA GCGAC TCGAT GTCGC CGTTGAAACGTTGAC Aflv_0629 681092 - 682060 + | Tfp pilus assembly protein, ATPase PilM TERM 1074 682133 - 682148 + GF 73 -2.5 -5.17488 | overlap 682132 682131 AGCTGTTTTATTGAT CGTTG GCGCGA CGACG TTTTATTTTACTGTT Aflv_0630 682038 - 682625 + | Fimbrial assembly protein PilN TERM 1075 682845 - 682855 + GF 78 -4 -5.12971 | overlap 682834 TTCCTGTTCAACCGT TTGT CGA ACAA TTTTTATTAGATATT Aflv_0631 682592 - 683248 + | Pilus assembly protein PilO TERM 1076 683605 - 683590 - g 71 -4 -4.77173 | gap 1 TTGTGACAAAACAAA GTGA-CG GTA CGATCAC ATATGCCGTTTGTTT pulE 683262 - 683702 + | Pilus assembly protein PilE TERM 1077 683731 - 683749 + F 100 -6.7 -6.71862 | GAAAACCTTCCGCAA CGAGACG ACAAA TGTCTCG TTTTTTTTTTCTTTT TERM 1078 684102 - 684081 - g 77 -6.5 -4.73092 | ACAACTGAAAATAAA CCAGCATCG ACAG CGACGTTGG AACAAGAACAAAAAG spoIIB 683835 - 684590 + | Stage II sporulation protein B TERM 1079 684591 - 684605 + F 100 -10 -5.93809 | opp_overlap 684591 CATGTTTTACATTAA GAAGCG AGT CGCTTC TTTTTTTTGTCGAAC TERM 1080 684605 - 684591 - f 75 -10 -3.2614 | opp_overlap 684591 CATGTTTTACATTAA GAAGCG AGT CGCTTC TTTTTTTTGTCGAAC TERM 1081 684893 - 684882 - g 100 -5.8 -6.09888 | TGGCAACAAAAAAAA GACG CGTG CGTC ATCGGTGCAGATACG maf 684693 - 685271 + | Nucleotide-binding protein implicated in inhibition of septum formation spoIVCA 687112 - 685706 - | Site-specific recombinase spoIVCA TERM 1082 686043 - 686057 + g 74 -4.2 -5.03227 | overlap 686044 CGAAGCCGTTCTTCC AGAGCT TCC AGCTCC TTTTCTTTCTCATCT TERM 1083 686044 - 686056 + g 70 -7.7 -3.60309 | overlap 686043 GAAGCCGTTCTTCCA GAGCT TCC AGCTC CTTTTCTTTCTCATC TERM 1084 686821 - 686843 + g 74 -9.2 -3.32819 | opp_overlap 686814 686818 686842 TAAACTTACAACCGT GCTGTTCGAA TAT TTCTAACAGC TTGTACAAATCTGTA TERM 1085 687154 - 687134 - R 93 -10.4 -4.82901 | opp_overlap 687136, overlap 687136 TCCCTCCTATAAAAA CAGGCGGG AGCGA CCCGCCTA TCTAAATCTTTAGCG TERM 1086 687136 - 687152 + r 78 -10.8 -2.96638 | opp_overlap 687136 687134 CCTCCTATAAAAACA GGCGGG AGCGA CCCGCC TATCTAAATCTTTAG TERM 1087 687152 - 687136 - R 88 -10.8 -4.03995 | opp_overlap 687136, overlap 687134 CCTCCTATAAAAACA GGCGGG AGCGA CCCGCC TATCTAAATCTTTAG lexA 687757 - 687170 - | SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase) TERM 1088 687318 - 687342 + g 90 -10.7 -4.01137 | opp_overlap 687313 CTTTTCAATACTGCC TCGCCGTCG ATCAGCA CGGCGGCGA TTTCTCCATTGTCTA TERM 1089 687745 - 687761 + g 71 -2.1 -5.10461 | overlap 687740 687746 GTTTTTTAGCCAAGT CCGCTTG TGT CATGCGA TTTTTCTTCCGTAAC Aflv_0638 687899 - 687735 - | hypothetical protein TERM 1090 687870 - 687829 - G 100 -13.4 -3.38812 | opp_overlap 687832 687836, overlap 687832 687836 TCCTTTCTAACAATA TTATAAAGCAATACTGTA ATTTTG TACAGTATTGCTTTATTA AGTGTGAAAAAAACG TERM 1091 687867 - 687832 - G 100 -15.1 -2.85545 | opp_overlap 687832 687836, overlap 687829 687836 TTTCTAACAATATTA TAAAGCAATACTGTA ATTTTG TACAGTATTGCTTTA TTAAGTGTGAAAAAA TERM 1092 687832 - 687867 + g 100 -15.1 -3.12351 | opp_overlap 687829 687832 687836, overlap 687836 TTTCTAACAATATTA TAAAGCAATACTGTA ATTTTG TACAGTATTGCTTTA TTAAGTGTGAAAAAA TERM 1093 687863 - 687836 - G 100 -11.5 -4.10178 | opp_overlap 687836 687832, overlap 687832 687829 TAACAATATTATAAA GCAATACTGTA ATTTTG TACAGTATTGC TTTATTAAGTGTGAA TERM 1094 687836 - 687863 + g 100 -11.5 -4.23213 | opp_overlap 687832 687829 687836, overlap 687832 TAACAATATTATAAA GCAATACTGTA ATTTTG TACAGTATTGC TTTATTAAGTGTGAA Aflv_0639 687974 - 688189 + | Predicted transcriptional regulator, xre family Aflv_0640 688339 - 688515 + | hypothetical protein TERM 1095 688507 - 688518 + GF 76 -7.2 -4.17048 | GAAGAAGCTGAATTC GCCC TCTA GGGC TTCTTTTCGGAAGGA Aflv_0641 688484 - 688963 + | hypothetical protein Aflv_0642 688969 - 689172 + | hypothetical protein TERM 1096 689367 - 689349 - g 73 -10.4 -2.53409 | opp_overlap 689348, overlap 689336 689334 689341 689348 689344 CACGAATTTATCAAC TCGTATCA AAT TGATACGA CTTGGCTCAAAGCCC Aflv_0643 689169 - 689933 + | Phage related anti-repressor protein Aflv_0644 690166 - 690429 + | hypothetical protein Aflv_0645 690426 - 690653 + | hypothetical protein TERM 1097 690818 - 690795 - g 100 -8.8 -5.64873 | opp_overlap 690795 690796, overlap 690796 TGCAACAAGAAAAAA CGGCCAGCGC GGCA ACGCTAGCCA TTTAATCACAACTCA TERM 1098 690817 - 690796 - g 86 -10.1 -3.97297 | opp_overlap 690796 690795, overlap 690795 GCAACAAGAAAAAAC GGCCAGCGC GGCA ACGCTAGCC ATTTAATCACAACTC Aflv_0646 690650 - 690823 + | hypothetical protein Aflv_0647 690924 - 691172 + | hypothetical protein TERM 1099 691197 - 691178 - f 100 -10 -6.11229 | AGCAAAATAAAAAAA GCTTCGCC AAAC GGCAAAGC ACTTCACATCACACA Aflv_0648 691243 - 691560 + | RecB family endonuclease TERM 1100 692657 - 692641 - g 80 -6.5 -4.79826 | opp_overlap 692641 692643 ATATATCACCAAAAA CAGCATC GAA GAAGCTG TATATGAGGCGCTTG Aflv_0649 691676 - 692725 + | Superfamily II DNA/RNA helicase, SNF2 family Aflv_0650 692730 - 693623 + | Phage-related protein, endonuclease of lambda exonuclease family Aflv_0651 693625 - 694494 + | Phage-associated ATPase TERM 1101 694667 - 694632 - g 78 -9.9 -3.41527 | gap 1, opp_overlap 694641, overlap 694621 694620 694633 CAATGGTTACGATAA CCTTCCA-GATGGCAT TTACG ACGCCATCTTGGAAGA TGTGCAATTCCGCGT TERM 1102 694666 - 694633 - g 76 -11.2 -2.64595 | gap 1, opp_overlap 694641, overlap 694620 694632 AATGGTTACGATAAC CTTCCA-GATGGCAT TTACG ACGCCATCTTGGAAG ATGTGCAATTCCGCG Aflv_0652 694546 - 695016 + | hypothetical protein TERM 1103 695653 - 695665 + G 74 -4.8 -4.83169 | overlap 695649 TAAATGAATTGCCGC GCGA AGTGG TCGC TTTTTATGAAAACAT Aflv_0653 695028 - 696716 + | DNA polymerase family B Aflv_0654 696729 - 697238 + | Phage-related protein, containing Zn-ribbon domain Aflv_0655 697241 - 697630 + | Phage-encoded dCTP pyrophosphatase TERM 1104 697672 - 697645 - g 100 -13.6 -3.37879 | opp_overlap 697649, overlap 697649 ATGAAGCGCAAGCAA GAAAGGGAGAAA ACCA CTTCTCCCTTTC ATCCAAACGTTATGG TERM 1105 697649 - 697668 + G 70 -7.9 -3.73072 | opp_overlap 697645 697649 AGCGCAAGCAAGAAA GGGAGAA AACCAC TTCTCCC TTTCATCCAAACGTT TERM 1106 697668 - 697649 - g 82 -8.6 -4.32951 | opp_overlap 697649, overlap 697645 AGCGCAAGCAAGAAA GGGAGAAA ACCA CTTCTCCC TTTCATCCAAACGTT Aflv_0656 697630 - 697863 + | hypothetical protein TERM 1107 699173 - 699200 + G 78 -9.8 -3.53091 | opp_overlap 699166 TTTAAAACGCTCGCT TCTGGCGATCCA ATCA TGGTTCGCCCGA TTTACCAACAGCCGT Aflv_0657 697868 - 699730 + | Phage associated DNA primase TERM 1108 699715 - 699743 + F 78 -7.6 -4.32131 | opp_overlap 699714 AAAGGTTACAGATAT GGTTACAGAT CAATGAAAC ATCTGTAACC TTTCATTTCTTTTAA TERM 1109 699841 - 699856 + F 100 -4.8 -6.04419 | opp_overlap 699841 699843 TGTAACCTTTATAAT TATTGA TATA TCAATA TTTTTTTATTATTTT TERM 1110 700550 - 700591 + G 91 -13.1 -2.64616 | opp_overlap 700558, overlap 700556 700558 AATTAAAAAGCGAAT CAAAGAAAGCCTCTTCTGC ATGT GCGGATGAGGCTGTTTTTG TCGTGTAAATGCCAC xpf 700080 - 700580 + | DNA-directed RNA polymerase specialized sigma subunit TERM 1111 700556 - 700585 + F 90 -8.5 -4.95155 | opp_overlap 700558, overlap 700550 700558 AAAGCGAATCAAAGA AAGCCTCTTCTGC ATGT GCGGATGAGGCTG TTTTTGTCGTGTAAA TERM 1112 700558 - 700583 + F 88 -11.1 -4.09649 | opp_overlap 700558, overlap 700556 700550 AGCGAATCAAAGAAA GCCTCTTCTGC ATGT GCGGATGAGGC TGTTTTTGTCGTGTA TERM 1113 700583 - 700558 - f 88 -8.9 -4.57304 | opp_overlap 700558 700556 700550 AGCGAATCAAAGAAA GCCTCTTCTGC ATGT GCGGATGAGGC TGTTTTTGTCGTGTA TERM 1114 700632 - 700660 + F 90 -10.4 -4.42653 | AGTCCTCCTTTTTCT TGAGTGCCTAGT CATAT GCTAGGCACTTA TTTTATGCATGGGGT TERM 1115 700844 - 700859 + G 100 -6.8 -5.64421 | opp_overlap 700844 GCGTAAATAAATTTA GCATCC TTCG GGGTGC TTTTTTGTTTGGGGT Aflv_0659 700816 - 701178 + | Restriction endonuclease, McrA/HNH family, phage related TERM 1116 701455 - 701445 - g 71 -4.6 -4.62441 | CTTTACACAAATAAA GCCG GAG CGAC GAATGAAAGAAAGAC Aflv_0660 701229 - 701618 + | Phage terminase, small subunit Aflv_0661 701615 - 703339 + | Phage terminase, large subunit TERM 1117 704154 - 704176 + GF 100 -8.4 -5.31059 | opp_overlap 704147 704154, overlap 704147 GATAAGAGGACAGTA GCTGGCATTT TTG GGGTGCCAGC TTTTTTACTTGGTGT TERM 1118 704297 - 704267 - gf 86 -12 -3.11564 | overlap 704265 704271 GAAAGGGATTGAACA GGAACTGACAAGAA AAC TTCTCATCAGTCCC GACCTTTATTTCAAA TERM 1119 704498 - 704488 - gf 70 -5.4 -4.36914 | TCCCTCTTGACAAAA TTGG CGA CCAA AACAAATTGAAAGGT Aflv_0662 703329 - 704540 + | Phage portal protein Aflv_0663 704512 - 705132 + | Phage head maturation protease TERM 1120 705839 - 705828 - gf 93 -2.2 -6.11243 | overlap 705829 ATGTAACAAAAAAAA TCGC TCGC GCAA TTGCGAAGGCGTTGG Aflv_0664 705095 - 706369 + | Phage major capsid protein Aflv_0665 706377 - 706562 + | Phage related protein TERM 1121 706707 - 706682 - g 74 -4.6 -4.87626 | opp_overlap 706682 CTTGAAGACGAAAAA GGGTTGGTGC TGGATG GTGCCAACCC TTATCATTTGATGTT TERM 1122 706682 - 706707 + G 80 -9.7 -3.64523 | opp_overlap 706682 CTTGAAGACGAAAAA GGGTTGGTGCT GGAT GGTGCCAACCC TTATCATTTGATGTT Aflv_0666 706562 - 706837 + | Phage related protein Aflv_0667 706818 - 707183 + | Phage related protein Aflv_0668 707195 - 707500 + | Prophage pi2 protein Aflv_0669 707454 - 707876 + | Phage related protein Aflv_0670 707860 - 708198 + | Phage related protein Aflv_0671 708203 - 708781 + | Phage major tail protein TERM 1123 708818 - 708842 + G 84 -10.8 -3.57651 | opp_overlap 708818 708817 708816 GGTAATCAACAAATC GGGTTAAAGG CGACA CCTTTAGCCC TTCTCTACTATAAAC Aflv_0672 708785 - 709132 + | Phage related protein Aflv_0673 709300 - 712251 + | Phage-related tail protein TERM 1124 712294 - 712314 + G 100 -11.2 -5.09259 | opp_overlap 712289 712292 AAGAGGACAATCAGT GGAGCTGA AATCA TCAGCTCC TTTTCTTTTACAATC Aflv_0674 712253 - 713116 + | Phage-related putative tail protein TERM 1125 713132 - 713147 + G 75 -3.2 -5.08824 | opp_overlap 713132 AGAGGTGAAGCAAAT GCCG GAAAAAAG CGGC TTTTTTGACTCAACG TERM 1126 713352 - 713334 - g 89 -10.4 -3.96531 | GGATACATGTACAAA GTGTATGA CGG TCATACAC TCACTATTGACACTG Aflv_0675 713121 - 714755 + | Phage-related putative tail protein Aflv_0676 714767 - 715150 + | hypothetical protein TERM 1127 715318 - 715336 + F 86 -4.5 -5.4833 | opp_overlap 715318 GATAATGCGACATAA CACCGAT TTTAT AACGGTG TTTTTTATTAGGTGG Aflv_0677 715358 - 716503 + | Phage related protein Aflv_0678 716541 - 716759 + | Phage-related XpaF1 protein, involved in cell lysis Aflv_0679 716756 - 717016 + | hypothetical protein TERM 1128 717186 - 717174 - g 91 -7.7 -4.91084 | GATTGAAGAACAAAA TGCGT TAT ACGCA CAAGGTCGCGCGAAG ycdD 717013 - 717654 + | L-alanoyl-D-glutamate peptidase-related protein containing SLH domain TERM 1129 717659 - 717678 + T 100 -11.4 -5.75599 | opp_overlap 717659 717655 TGTTGAAATAATGAA TCCCTGCC GATT GGCGGGGA TTTTTTTATGCTTTC TERM 1130 717678 - 717659 - T 74 -9.2 -3.61652 | opp_overlap 717659, overlap 717655 TGTTGAAATAATGAA TCCCTGCC GATT GGCGGGGA TTTTTTTATGCTTTC Aflv_0681 717944 - 717684 - | Metal-binding Membrane-associated protein Aflv_0682 718159 - 717941 - | Predicted transcriptional regulator, xre family Aflv_0683 718435 - 718638 + | hypothetical protein Aflv_0684 718685 - 718855 + | hypothetical protein TERM 1131 718881 - 718908 + F 95 -12.1 -4.2008 | opp_overlap 718881 718885 GCCACAGACTAGCAA GGAACACGGGT GGGCAG ACTCGTGTTCC TTTATTACCATGTAT TERM 1132 718908 - 718881 - f 73 -9.9 -3.26545 | opp_overlap 718881, overlap 718885 GCCACAGACTAGCAA GGAACACGGGT GGGCAG ACTCGTGTTCC TTTATTACCATGTAT TERM 1133 720115 - 720105 - g 78 -5.4 -5.00884 | ATCGCGTTGAAAAAA TCGA GCG TCGA GAAGTTGACCGAAAG ftsK 718988 - 720160 + | FtsK/SpoIIIE family protein (ATPase) TERM 1134 720818 - 720796 - f 91 -7.7 -5.22039 | opp_overlap 720797, overlap 720797 CTTAAAGTGAAAAAA GGCCTACTC GATTT GAGTAGGCT TTTTTTATAACATAG TERM 1135 720817 - 720797 - f 88 -11.2 -3.72139 | opp_overlap 720797, overlap 720796 TTAAAGTGAAAAAAG GCCTACTC GATTT GAGTAGGC TTTTTTTATAACATA TERM 1136 720797 - 720817 + F 100 -11.9 -5.626 | opp_overlap 720796 720797 TTAAAGTGAAAAAAG GCCTACTCG ATT TGAGTAGGC TTTTTTTATAACATA TERM 1137 721508 - 721464 - g 70 -5.1 -4.50761 | gap 1, overlap 721467 ATGAAGCGAAACAAA TGATCGGACGTA-CGCCA GGAAACGTTG TGGCGCTTCGTCCGATGA AAGATGGAGTGATCG mreB 721241 - 722326 + | Actin-like ATPase involved in cell morphogenesis TERM 1138 722528 - 722507 - g 81 -10.9 -3.30243 | gap 1, opp_overlap 722507 ATCGATCGTGCATAA GCCCGC-ACA GTT TGTTGCGGGC TTCTTTGAAAATGTG TERM 1139 722507 - 722528 + G 90 -10.9 -3.93256 | gap 1, opp_overlap 722507 ATCGATCGTGCATAA GCCCGC-ACA GTT TGTTGCGGGC TTCTTTGAAAATGTG TERM 1140 722809 - 722789 - g 95 -4.7 -5.75342 | overlap 722791 CGGTGTGAAAAAAAA TATGGCG GTCATTA CGCCACA AGGACTAATCGGCAA TERM 1141 722807 - 722791 - g 70 -5.1 -4.52949 | overlap 722789 GTGTGAAAAAAAATA TGGCG GTCATTA CGCCA CAAGGACTAATCGGC mreC 722346 - 723206 + | Cell shape-determining protein mreD 723203 - 723727 + | Cell shape-determining protein minC 723696 - 724457 + | Septum formation inhibitor minD 724454 - 725266 + | Septum formation inhibitor-activating ATPase (activate MinC) TERM 1142 725266 - 725285 + F 100 -10 -5.31059 | overlap 725256 GTTTAGCGCTCGTTA GCACTTCC ATTT GGAGGTGC TTTTTTCATTCATAT spoIVFA 725354 - 726085 + | Stage IV sporulation protein FA (inhibition of SpoIVFB (negative regulation) and hypothesised to stabilize the thermolabile spoIVFB product (positive regulation)) TERM 1143 726632 - 726642 + G 79 -3.2 -5.41143 | GCACATGAATTTATG GATC ATT GGTC TTTTTTTGGCGCATG spoIVFB 726078 - 726941 + | Stage IV sporulation protein FB, Zn-dependent protease rplU 727028 - 727387 + | Ribosomal protein L21 TERM 1144 727431 - 727445 + G 70 -7.8 -3.66178 | opp_overlap 727423 727419, overlap 727419 AATCGAACGTCAGAG GGGACG ATT CGTTCC TTTACCATTAGCGGA Aflv_0695 727398 - 727733 + | Predicted ribosomal protein rpmA 727747 - 728037 + | Ribosomal protein L27 TERM 1145 728045 - 728075 + F 100 -14.2 -5.2291 | opp_overlap 728050, overlap 728050 AAGCATAAGGAAGTG GAAAACTCTAACCG ACT TGGTTAGGGTTTTC TTTTTGTTATCGTAT TERM 1146 728050 - 728070 + F 95 -8.3 -5.44638 | opp_overlap 728050, overlap 728045 TAAGGAAGTGGAAAA CTCTAACCG ACT TGGTTAGGG TTTTCTTTTTGTTAT spo0B 728126 - 728671 + | Sporulation initiation phosphotransferase, spo0B obg 728702 - 729988 + | Spo0B-associated GTPase Obg pheB 729972 - 730451 + | ACT domain-containing protein PheB pheA 730466 - 731329 + | Prephenate dehydratase TERM 1147 731316 - 731336 + T 95 -4.7 -5.83226 | opp_overlap 731316 731304 731319 ATACCGTAAAAAAAA CATCCCT CGTGTAA GGGGATG TTTTTTTATTCGATT TERM 1148 731336 - 731316 - T 88 -4 -5.79526 | opp_overlap 731316, overlap 731304 731319 ATACCGTAAAAAAAA CATCCC TCGTGTAAG GGGATG TTTTTTTATTCGATT Aflv_0701 731875 - 731342 - | Predicted trancriptional regulator (HTH fused to 3H domain) Aflv_0702 733044 - 731872 - | Cysteine sulfinate desulfinase/cysteine desulfurase TERM 1149 732234 - 732247 + g 87 -5.2 -5.58209 | TATTCATATGGTGTT GCGC TGTTGT GCGC TTTTTTTCGATTTCA nadB 733101 - 734633 + | L-aspartate oxidase nadC 734570 - 735460 + | Nicotinate-nucleotide pyrophosphorylase TERM 1150 735564 - 735554 - g 82 -6.8 -4.86939 | opp_overlap 735561 735563, overlap 735558 GAAGAAATGGAAAAA CGAG TCG CTCG TGTCAAGCGGGAGCT TERM 1151 735561 - 735588 + G 86 -7.6 -4.67607 | opp_overlap 735554 735558, overlap 735563 TGGAAAAACGAGTCG CTCGTGTCAAGC GGGA GCTCGGCACGCG TTTATTTATTCCAGG nadA 735473 - 736576 + | Quinolinate synthase TERM 1152 736577 - 736598 + F 100 -8 -5.98675 | opp_overlap 736577 736580 TTAGCGCGCGCATAA GATCGGCA TTTTTT TGCCGGTC TTTTTTATTTTTATC TERM 1153 737588 - 737604 + G 81 -5.2 -5.1485 | TGGCAGGGGCAACCG TATGGA ATGAA TCCATA TTTTTCTGTTCCTTA Aflv_0706 736712 - 737644 + | LysM domain containing protein TERM 1154 737627 - 737658 + F 89 -6.7 -5.2197 | gap 1, opp_overlap 737635, overlap 737635 GTTCCTTATCGTGAG GAAGAAGAGG-GGC AATAA GTCGCCTCTTTTTC TTTTTGCTTTTTGTG TERM 1155 737635 - 737652 + F 83 -3.3 -5.67529 | opp_overlap 737635, overlap 737627 TCGTGAGGAAGAAGA GGGGCAA TAAG TCGCCTC TTTTTCTTTTTGCTT TERM 1156 738287 - 738277 - g 75 -8.2 -3.83102 | GAAATTATTACGAAA GCGC CTA GCGC AGGTCTTTGGGAAGG nadE 737719 - 738459 + | NH3-dependent NAD+ synthetase Aflv_0708 738505 - 739233 + | Spore cortex protein CoxA TERM 1157 739256 - 739235 - f 100 -14.5 -3.54459 | opp_overlap 739235, overlap 739238 TGAATCGCGGCTAAA GAACAGGGG CTCC CCCCTGTTC TTTTTCATTTATTTT TERM 1158 739235 - 739256 + F 100 -14.5 -5.1517 | opp_overlap 739235 739238 TGAATCGCGGCTAAA GAACAGGGG CTCC CCCCTGTTC TTTTTCATTTATTTT TERM 1159 739253 - 739238 - f 84 -10.4 -3.90922 | opp_overlap 739235, overlap 739235 ATCGCGGCTAAAGAA CAGGGG CTCC CCCCTG TTCTTTTTCATTTAT Aflv_0709 739318 - 740055 + | hypothetical protein TERM 1160 740056 - 740077 + F 100 -14.5 -4.19735 | opp_overlap 740056 TCTATGTTAGAATAA CGGTCTTGC GGTA GCAAGACCG TTTAATTTTGGAGAA TERM 1161 740077 - 740056 - f 100 -14.5 -3.80733 | opp_overlap 740056 TCTATGTTAGAATAA CGGTCTTGC GGTA GCAAGACCG TTTAATTTTGGAGAA Aflv_0710 740105 - 740569 + | Forespore regulator of the sigma-K checkpoint, BofC TERM 1162 740592 - 740567 - f 86 -10.5 -4.0896 | opp_overlap 740567 740570, overlap 740570 AAACCGTTTGGAAAA TAAGCCCGC GCATGAAA GCGGGCTTA TTGTGCTTCCGCTTT TERM 1163 740567 - 740592 + F 79 -10.5 -3.52941 | opp_overlap 740567 740570, overlap 740570 AAACCGTTTGGAAAA TAAGCCCGC GCATGAAA GCGGGCTTA TTGTGCTTCCGCTTT TERM 1164 740570 - 740589 + F 73 -7.8 -3.8917 | opp_overlap 740567 740570, overlap 740567 CCGTTTGGAAAATAA GCCCGC GCATGAAA GCGGGC TTATTGTGCTTCCGC TERM 1165 740589 - 740570 - f 77 -7.8 -4.17048 | opp_overlap 740570 740567, overlap 740567 CCGTTTGGAAAATAA GCCCGC GCATGAAA GCGGGC TTATTGTGCTTCCGC ruvA 740663 - 741256 + | Holliday junction resolvasome, DNA-binding subunit TERM 1166 742169 - 742188 + G 82 -5.8 -5.00616 | gap 1, opp_overlap 742169 GAAGACGTATATGAA CCGTATTTG TTA CAAAT-CGG TTTTTTACAACGAAC ruvB 741266 - 742273 + | Holliday junction resolvasome, helicase subunit RuvB Aflv_0713 742345 - 743520 + | Transposase TERM 1167 743715 - 743701 - g 85 -7.2 -4.77157 | opp_overlap 743700 CGAACCTACCAAAAA CAATCA TGC TGATTG GTGTCGTTCTTATCA Aflv_0714 743682 - 743888 + | hypothetical protein queA 743907 - 744944 + | S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) TERM 1168 746019 - 746056 + G 71 -3.3 -5.02074 | opp_overlap 746018 746032, overlap 746024 746032 AGCAAGTGCGACAAG CGATTCGCGAAGATCGC CTTG GCGATTTCCGTGAGCAG TTTTTTGAACAATAC tgt 744965 - 746104 + | tRNA-guanine transglycosylase Aflv_0717 746119 - 746382 + | Preprotein translocase subunit YajC TERM 1169 746380 - 746404 + T 93 -9.4 -4.87786 | opp_overlap 746380 GTTGTCAATGAAAAA TAAGACAGGT TTGTT GCCTGTCTTA TTTTTATGCGCTTCG TERM 1170 746404 - 746380 - T 90 -8.7 -4.8622 | opp_overlap 746380 GTTGTCAATGAAAAA TAAGACAGG TTTGTTG CCTGTCTTA TTTTTATGCGCTTCG Aflv_0718 746803 - 746408 - | hypothetical protein TERM 1171 747372 - 747337 - g 85 -4.1 -5.47846 | opp_overlap 747337 AAGGAAAAAAGAAAA CACCGTCTTTAGT GTTGCCGCTT ATTAAAGACGGCG TCATTCAAGAAGAAC Aflv_0719 746868 - 747521 + | hypothetical protein spoVB 749045 - 747522 - | Spore cortex synthesis memebrane protein, SpoVB TERM 1172 749208 - 749191 - gH 73 -5.6 -4.4773 | GTAGATGAACTAAAA TTGCTC GGTTAT GAGCAA GCGACGATTGAGGAT Aflv_0721 749038 - 749409 + | hypothetical protein TERM 1173 749489 - 749472 - fH 91 -9.9 -4.56597 | TTTTGTTGGTAAAAA TTCTGGC ACAT GCCAGAA TAGAGGAGGATTTTT TERM 1174 751312 - 751322 + G 79 -3.2 -5.31275 | CTATTGTTGCGCTAT TGCA TGA TGCG TTTTTTATCATCGCC Aflv_0722 749505 - 751751 + | Preprotein translocase subunits SecDF TERM 1175 751773 - 751752 - f 88 -11.5 -3.58854 | opp_overlap 751752, overlap 751746 751740 GAACCAGAAGTATAA CGTCGTGGC GCAT GCCGCGACG TTTTTTCGTGGCGTG TERM 1176 751752 - 751773 + F 100 -13.7 -5.15634 | opp_overlap 751752 751746 751740 GAACCAGAAGTATAA CGTCGTGGC GCAT GCCGCGACG TTTTTTCGTGGCGTG TERM 1177 752285 - 752305 + G 84 -3.9 -5.5074 | overlap 752283 752285 CGATTATCGTTAATG CGTACGAGC ATC GTTCGGATG TTTTTTCTTCGATTG TERM 1178 752559 - 752576 + G 72 -7.7 -3.87364 | overlap 752566 CATTGACTCACTTTA TGCCCGT CAAC ATGGGCA TTATGTTGTTGTCGA Aflv_0723 751834 - 752727 + | Predicted Co/Zn/Cd cation transporter TERM 1179 753998 - 754038 + GF 74 -5.3 -4.73614 | overlap 754000 TTGTCGCGATATTTT GCCGCATTTTGGCGGACAT CCG ATGGCGGCCGGAATGACGC TTTCTTTTCATGATG Aflv_0724 752772 - 755141 + | Single-stranded DNA-specific exonuclease RecJ apt 755089 - 755619 + | Adenine/guanine phosphoribosyltransferase TERM 1180 755625 - 755643 + F 82 -8.1 -4.64598 | opp_overlap 755625 755624 755627 GCAATTTTAATGAAG GAGGGGC AAAAC GCTCCTC TTTTTCGCATCGTTG TERM 1181 756117 - 756092 - g 71 -4.7 -4.6265 | overlap 756093 ACAACAAGCAGAAAA TCATCGCAAAA TGTT TTTAGCGATGG CGCAAGATATACGAG relA 755724 - 757922 + | GTP pyrophosphokinase (ppGpp synthetase) Aflv_0727 757937 - 758377 + | D-Tyr-tRNAtyr deacylase TERM 1182 758381 - 758406 + T 100 -7.5 -5.58179 | opp_overlap 758381 758371 GAAAGCAAATAAAAA CCGTGCTCG CATATGGA CGAGCCCGG TTTTTTCTTATCCTC TERM 1183 758406 - 758381 - T 93 -8.2 -5.41941 | opp_overlap 758381, overlap 758371 GAAAGCAAATAAAAA CCGTGCTCGC ATATGG ACGAGCCCGG TTTTTTCTTATCCTC Aflv_0728 758593 - 758414 - | hypothetical protein TERM 1184 758655 - 758669 + H 75 -2.8 -5.22481 | AATTTTTCTACCTTT TCATTC AAA GAAGGA TTTTGTTTGTTTGTG TERM 1185 759035 - 759019 - g 100 -8.1 -5.29208 | AAAAGAAAAAACAAA TACAACA ACT TGTTGTA TGCCAAGCAGACGGA Aflv_0729 758805 - 760001 + | N-acetylmuramoyl-L-alanine amidase TERM 1186 760270 - 760301 + F 100 -12.4 -5.30616 | CACCACGGGAACTCG TCTCTCGTCCCTAA TTTA TTAGGGGTGGGAGA TTTTTATTTGCATAA hisS 760337 - 761608 + | Histidyl-tRNA synthetase TERM 1187 762833 - 762820 - g 77 -3.8 -5.24129 | opp_overlap 762809 762830 GTCGCTGATAAAAAA TCGG TTGTTG CCGA TGCGCTTGGTGCATT aspS 761620 - 763398 + | Aspartyl-tRNA synthetase TERM 1188 763701 - 763652 - f 91 -8 -5.33405 | opp_overlap 763660, overlap 763660 CTTAGGAAACAAAAA CGAATAAAGCCTTGACGTAAAG AACATG CTTTACGTTGAGGCTTTTTTTG TGCCATAATGCATGT TERM 1189 763693 - 763660 - f 82 -8.2 -4.52042 | opp_overlap 763660, overlap 763652 ACAAAAACGAATAAA GCCTTGACGTAAAG AACATG CTTTACGTTGAGGC TTTTTTTGTGCCATA TERM 1190 763660 - 763693 + F 100 -12.6 -5.626 | opp_overlap 763660 763652 ACAAAAACGAATAAA GCCTTGACGTAAAG AACATG CTTTACGTTGAGGC TTTTTTTGTGCCATA Aflv_0732 763709 - 764518 + | Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis TERM 1191 764519 - 764541 + F 100 -14.2 -5.00884 | opp_overlap 764516 764519 GTCGATCAACAATGA GCGCAAAGGG AAC TCCTTTGCGC TTTTTTACAGCACAT TERM 1192 764541 - 764519 - f 93 -13.5 -2.96249 | opp_overlap 764519, overlap 764516 GTCGATCAACAATGA GCGCAAAGG GAACT CCTTTGCGC TTTTTTACAGCACAT TERM 1193 765164 - 765152 - g 84 -3.5 -5.45726 | CAGAGTTGAAAAAAA TTAAT GGC ATTAA CTCCATTTCTGTCGG TERM 1194 767483 - 767471 - g 72 -7.7 -3.84901 | GTGAGCAAAAAGGAA TGACG ATT CGTCA AGCGCTTATTGAAGC Aflv_0733 764662 - 767721 + | Cation/multidrug efflux pump TERM 1195 767729 - 767755 + F 100 -15.2 -3.77808 | opp_overlap 767731 AAGCATAATTGGAGA CAGGCTGGCTGA AAT TCGGTCAGCCTG TTGTGTTATAATAAA TERM 1196 768517 - 768506 - g 72 -7.2 -4.00788 | AAAACAGAAATACAA CGGG ATGA CCCG AGAAAAGCGATTGTT Aflv_0734 767801 - 768610 + | Transcriptional regulator, TetR/AcrR family Aflv_0735 768623 - 769903 + | ATPase Aflv_0736 769941 - 770393 + | Putative transcriptional regulator YrzC TERM 1197 770822 - 770812 - g 100 -8.2 -4.74706 | TTGAACAGCTAAAAA GCGC TTT GCGC GACGATACGGTTCTT TERM 1198 771283 - 771305 + G 76 -7 -4.56775 | opp_overlap 771274, overlap 771284 ATGAAACAAATCGTT TGCCACATGT ATT AAATGTGGCG TTTTTCGGAACAAAT Aflv_0737 770403 - 771554 + | Cysteine desulfurase family aminotransferase trmU 771551 - 772666 + | tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase TERM 1199 772666 - 772694 + F 100 -7.5 -5.58179 | overlap 772667 GACATATGTTGGCTA ACCTTCAACTC AACAGAC GAGTTGAAGGC TTTTTTGTTATAATA TERM 1200 772667 - 772693 + F 86 -11 -3.9328 | overlap 772666 ACATATGTTGGCTAA CCTTCAACTC AACAGAC GAGTTGAAGG CTTTTTTGTTATAAT TERM 1201 772899 - 772879 - g 100 -12.7 -3.61398 | GCTGTCGGTGAAGAA GAAAAAGCG ATT CGCTTTTTC CATAAAGCACTTGAA TERM 1202 772937 - 772927 - g 74 -4.6 -4.74801 | opp_overlap 772927 GAACTTGATGAAAAA GCAG CGA CCGC TTATTACGGACTCGG TERM 1203 773155 - 773124 - g 74 -8 -4.02108 | gap 1, opp_overlap 773133 GGCAGTAGAATTAAA CGAGC-GCGATGTCG AAG CGACATTTCAGCTCG GGCTTTGTTTCGCAC TERM 1204 773133 - 773145 + G 70 -7.7 -3.60475 | opp_overlap 773124 ATTAAACGAGCGCGA TGTCG AAG CGACA TTTCAGCTCGGGCTT Aflv_0739 772720 - 773385 + | TPR -repeat containing protein Aflv_0740 773397 - 775751 + | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member Aflv_0741 775810 - 776043 + | Zn-ribbon containing protein Aflv_0742 776054 - 776194 + | hypothetical protein TERM 1205 776190 - 776241 + F 95 -13.5 -3.38484 | gap 2, opp_overlap 776203, overlap 776203 TGTTGCGCCCATTTA TG-TA-ACGAAAAAACGGCAATCTC ATTT GAGGTTGCCGTTTTTTTGTATAACA TTCCCTTTGTATTCT TERM 1206 776226 - 776203 - f 100 -11 -5.28481 | opp_overlap 776190 776203 TATGTAACGAAAAAA CGGCAATCTC ATTT GAGGTTGCCG TTTTTTTGTATAACA TERM 1207 776203 - 776226 + F 100 -13.2 -5.71712 | opp_overlap 776203, overlap 776190 TATGTAACGAAAAAA CGGCAATCTC ATTT GAGGTTGCCG TTTTTTTGTATAACA TERM 1208 776370 - 776383 + G 74 -4.5 -4.75356 | TTGTAAAGCTTAAGT CGGTA TGGT TGCCG TTTTTACATGTATTT Aflv_0743 776276 - 777340 + | Predicted permease TERM 1209 777404 - 777392 - f 72 -3.4 -5.09685 | TAATACATACAAAAA CGAT GACGG ATCG AGTATGTTACAGCCC TERM 1210 777593 - 777618 + F 100 -11.9 -5.69068 | opp_overlap 777592 GGTACCGCGAGCAAG CTCTCGTCCCT GAGC AGGGATGGGAG TTTTTTATATTTTTA TERM 1211 777747 - 777759 + G 72 -7.7 -3.85209 | ATCGCTTATTCCAAT TGACG ACC CGTCA TTGTTATGGATTAAT TERM 1212 779398 - 779416 + G 81 -9.6 -3.75024 | GTACTTGGTGTGCAT GTGAACCA AGC TGGTTCGC TTGTTGCTCCTGACC alaS 777649 - 780282 + | Alanyl-tRNA synthetase TERM 1213 780481 - 780471 - g 82 -6.8 -4.82667 | GCATTACAGGAAAAA GGGT ATA ACCC GATTAACCAAATTGT Aflv_0745 780342 - 780632 + | hypothetical protein Aflv_0746 780622 - 781059 + | RNase H-like ribonuclease Aflv_0747 781056 - 781352 + | hypothetical protein TERM 1214 781375 - 781353 - f 75 -7.7 -4.1157 | opp_overlap 781353, overlap 781356 GAGGAAGAAGAATAA GAGGCTGAC TGCGC GTCAGCTTC TTTTTTATTTATGTC TERM 1215 781353 - 781375 + F 100 -9.9 -5.76237 | opp_overlap 781353 781356 GAGGAAGAAGAATAA GAGGCTGAC TGCGC GTCAGCTTC TTTTTTATTTATGTC TERM 1216 782051 - 782038 - g 75 -3.1 -5.24796 | overlap 782039 TTTACAGAAGAAAAA CCTTC GCTT GAAGA AATGATTGAAACCAT Aflv_0748 781438 - 782520 + | Aminodeoxychorismate lyase TERM 1217 782607 - 782581 - f 90 -12.5 -3.73775 | opp_overlap 782581, overlap 782584 TGGATCGTGATGAAA CAAGAGTTCAA TTCGT TTGAACTCTTG TTTTTGCGAGGAGGA TERM 1218 782581 - 782607 + F 100 -12.5 -4.56597 | opp_overlap 782581 782584 TGGATCGTGATGAAA CAAGAGTTCAA TTCGT TTGAACTCTTG TTTTTGCGAGGAGGA TERM 1219 782604 - 782584 - f 79 -8.4 -4.0031 | opp_overlap 782581, overlap 782581 ATCGTGATGAAACAA GAGTTCAA TTCGT TTGAACTC TTGTTTTTGCGAGGA TERM 1220 783023 - 783046 + GF 73 -2.3 -5.1925 | GTATTGTTTATTGAC GCGGCAAAA GGACAA TATCGCCGC TTTTTTGAGTTGTAC Aflv_0749 782597 - 783277 + | O-methyltransferase family enzyme TERM 1221 783699 - 783676 - gf 70 -9 -3.15027 | gap 1, opp_overlap 783675, overlap 783675 ATTGGGGACGAAAAG GAGCAA-AACG TGC CGTTCTTGCTC GTGAGTTGAATATGG TERM 1222 784165 - 784181 + GF 80 -3.6 -5.27335 | TTCAGCCGACACATC GCCCGT TAGAC ACCGGC TTTTTCTTTAAAGAA Aflv_0750 783216 - 784208 + | Collagenase family protease TERM 1223 785240 - 785223 - g 91 -5.5 -5.58454 | opp_overlap 785227, overlap 785227 TTCATAGCAAAAAAA CGACGTA CGAT TTCGTCG GACTTGTGCTTGACT Aflv_0751 784229 - 785482 + | Collagenase family protease udk 785484 - 786119 + | Uridine kinase TERM 1224 786157 - 786179 + F 90 -10.7 -4.19817 | AAACTTTTTGTCTTT TGTACGAAC TGCTC GTTCGTACA TTTTCCATACATAAA greA 786204 - 786689 + | Transcription elongation factor GreA TERM 1225 786730 - 786704 - f 76 -10.8 -2.63623 | opp_overlap 786704, overlap 786703 786701 786699 786706 GGTTTTAAAATACAT CACCTCGTCGAC AAT GAAGACGAGGTG TTTTTTATGGTAAAA TERM 1226 786704 - 786730 + F 100 -10.8 -5.31275 | opp_overlap 786704 786703 786701 786699 786706 GGTTTTAAAATACAT CACCTCGTCGAC AAT GAAGACGAGGTG TTTTTTATGGTAAAA TERM 1227 787312 - 787324 + G 74 -4.9 -4.90266 | opp_overlap 787312 GTCTGGCTTACAAAG TTCAT TTG ATGAA TTTTTAATTCCTGAC Aflv_0754 786728 - 788485 + | Cell division protein FtsI/penicillin-binding protein 2 TERM 1228 788631 - 788621 - g 75 -5.4 -4.7878 | overlap 788617 GACCGACAAAAGAAA CGAA TGC TTCG CCACAACCGGTTGAA Aflv_0755 788482 - 789078 + | hypothetical protein TERM 1229 789085 - 789062 - f 89 -8.9 -4.81843 | opp_overlap 789062 789054 AACAATTAAAAGAAA TAGAGCGCC GTCCGT GACGCTCTA TTTTTTTGCTTTAAA TERM 1230 789062 - 789085 + F 100 -7.4 -5.72207 | opp_overlap 789062, overlap 789054 AACAATTAAAAGAAA TAGAGCGCCG TCCG TGACGCTCTA TTTTTTTGCTTTAAA TERM 1231 790022 - 790012 - g 71 -3.2 -4.94058 | GCAAGCTAAAGAAAA TCGC CGG GCAA GAAAACCGTTTCATG Aflv_0756 789228 - 790430 + | Transposase Aflv_0757 790756 - 790538 - | hypothetical protein Aflv_0758 790794 - 791447 + | SAM-dependent methyltransferase mtn 791466 - 792164 + | Methylthioadenosine nucleosidase TERM 1232 792162 - 792184 + F 87 -8.4 -4.55826 | opp_overlap 792162 792164 792165, overlap 792165 AATGAATTAAATAAA TAGGGAGAGG CAT CCTCTCCTTC TTTTCATCTTTTGGG TERM 1233 792184 - 792162 - f 77 -6.2 -4.59212 | opp_overlap 792162 792165, overlap 792164 792165 AATGAATTAAATAAA TAGGGAGAGG CAT CCTCTCCTTC TTTTCATCTTTTGGG TERM 1234 792182 - 792164 - f 77 -8.8 -3.88884 | opp_overlap 792162 792165, overlap 792162 792165 TGAATTAAATAAATA GGGAGAGG CAT CCTCTCCT TCTTTTCATCTTTTG TERM 1235 792181 - 792165 - f 84 -12.3 -2.92246 | opp_overlap 792162 792165, overlap 792164 792162 GAATTAAATAAATAG GGAGAGG CAT CCTCTCC TTCTTTTCATCTTTT TERM 1236 792165 - 792181 + F 100 -12.3 -4.36348 | opp_overlap 792165 792164 792162, overlap 792162 GAATTAAATAAATAG GGAGAGG CAT CCTCTCC TTCTTTTCATCTTTT Aflv_0760 792195 - 793133 + | Cysteine synthase TERM 1237 794014 - 793999 - g 73 -2.6 -5.09895 | gap 1, overlap 794005 GACGTAGCGAAAAAA CAAATGC GCG GC-TTTG GCGGCATGGTGTCAT Aflv_0761 793135 - 794268 + | Cystathionine gamma-synthase(O-succinylhomoserine (thiol)-lyase) Aflv_0762 794304 - 794561 + | hypothetical protein TERM 1238 794731 - 794711 - T 81 -7.5 -4.5442 | opp_overlap 794711, overlap 794706 CGCTGAAGCATAAAA CAGTCTCCA AAT CGGAGGCTG TTTTTATACAACAAC TERM 1239 794711 - 794731 + T 89 -9 -4.82901 | opp_overlap 794711 794706 CGCTGAAGCATAAAA CAGTCTCC AAATC GGAGGCTG TTTTTATACAACAAC TERM 1240 795068 - 795041 - T 100 -11.4 -5.58074 | gap 1, opp_overlap 795041 TAAGGATTAAAAAAA GCTGTTCCG-AGC AAC ACTTCGGAACAGC TTTTTTGTTGTTATG TERM 1241 795041 - 795068 + T 100 -12.1 -5.68489 | opp_overlap 795041 TAAGGATTAAAAAAA GCTGTTCCGAG CAACAC TTCGGAACAGC TTTTTTGTTGTTATG Aflv_0763 795702 - 795079 - | Micrococcal nuclease (thermonuclease) family enzyme Aflv_0764 796001 - 796678 + | CRISPR system related protein, RAMP superfamily TERM 1242 797156 - 797146 - g 71 -4 -4.90917 | opp_overlap 797146, overlap 797134 AAAGTCAACGAAAAA TTGA CGC TCAA TTACTTTAAACCAGC Aflv_0765 796675 - 798450 + | CRISPR system related protein TERM 1243 799024 - 799010 - g 70 -7.8 -3.66666 | opp_overlap 799021 TTTAAAAGTGCTAAA CCGCAA CAT TCGCGG ACGACAAGAAAATTT TERM 1244 799021 - 799047 + G 73 -3.7 -4.9218 | gap 1, opp_overlap 799010 TAAACCGCAACATTC GCGGACGACAAG AAAA TTTGGC-TCCGC TTTTTGTCATCGGTG Aflv_0766 798447 - 799334 + | CRISPR system related protein Aflv_0767 799337 - 800038 + | CRISPR system related protein, RAMP superfamily TERM 1245 800079 - 800110 + G 91 -10.2 -4.15328 | opp_overlap 800080, overlap 800080 800082 AAAATCTGAGGGAAA AGAGACGATTCGTG AACA TACGGATCGTCTCC TTTATAATTTAAATT TERM 1246 800080 - 800109 + G 100 -13.7 -3.08112 | opp_overlap 800080, overlap 800079 800082 AAATCTGAGGGAAAA GAGACGATTCGTG AACA TACGGATCGTCTC CTTTATAATTTAAAT TERM 1247 800109 - 800080 - g 93 -10.8 -4.20106 | opp_overlap 800079 800080 800082 AAATCTGAGGGAAAA GAGACGATTCGT GAACAT ACGGATCGTCTC CTTTATAATTTAAAT TERM 1248 800082 - 800107 + G 77 -10.5 -3.09007 | opp_overlap 800080, overlap 800080 800079 ATCTGAGGGAAAAGA GACGATTCGTG AACA TACGGATCGTC TCCTTTATAATTTAA TERM 1249 800470 - 800460 - g 87 -4.6 -5.43487 | AAACGATATAAAAAA GCAG TTA CCGC AACTAAGTGAACACA Aflv_0768 800047 - 802227 + | CRISPR-associated protein Cas3 Aflv_0769 802242 - 802739 + | CRISPR-associated protein Cas4 (RecB family exonuclease) TERM 1250 803241 - 803253 + G 76 -2.7 -5.26119 | AGTCATTTAATGCGA TTTTG AAG CAAGA TTTTATTTTTGAAAA Aflv_0770 802739 - 803722 + | CRISPR-associated protein Cas1 Aflv_0771 803724 - 803987 + | CRISPR-associated protein Cas2 TERM 1251 804102 - 804159 + F 78 -7.4 -4.4267 | gap 2, opp_overlap 804108 804110 804111, overlap 804108 804108 804109 ACTTTACTGCAAAAC GCAGAA-G-ATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAGCACTTTTTGC TTTTGGATTTTAGGG TERM 1252 804108 - 804152 + F 86 -7.4 -5.10154 | gap 1, opp_overlap 804108 804110 804111, overlap 804102 804108 804109 CTGCAAAACGCAGAA G-ATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAGCAC TTTTTGCTTTTGGAT TERM 1253 804150 - 804108 - f 72 -8.7 -3.52113 | gap 1, opp_overlap 804102 804108 804108 804109, overlap 804110 804111 CTGCAAAACGCAGAA GATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAG-C ACTTTTTGCTTTTGG TERM 1254 804109 - 804150 + F 77 -11.1 -2.77595 | opp_overlap 804108 804110 804111, overlap 804108 804108 804102 TGCAAAACGCAGAAG ATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAGC ACTTTTTGCTTTTGG TERM 1255 804149 - 804110 - f 87 -12.4 -3.32984 | opp_overlap 804109 804108 804108 804102, overlap 804108 804111 GCAAAACGCAGAAGA TTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAG CACTTTTTGCTTTTG TERM 1256 804148 - 804111 - f 100 -15.9 -2.59068 | opp_overlap 804109 804108 804108 804102, overlap 804110 804108 CAAAACGCAGAAGAT TGTCATATCAACGCTTT CCAA AAATCGTTGATATGACA GCACTTTTTGCTTTT TERM 1257 805176 - 805156 - f 70 -5.5 -4.34345 | GATACATCATCAAAA CTACGTT TTATCTG AACGTAG TGGGATGTAAAGCGC TERM 1258 805591 - 805618 + F 79 -7 -4.53303 | opp_overlap 805597, overlap 805592 805593 GTAAAGGACGTTCCG AATGAAGAAGCC GAAT GGCTTCTTCAAG TTTTATCTGAACGTA TERM 1259 805592 - 805617 + F 77 -10.5 -3.315 | opp_overlap 805597, overlap 805591 805593 TAAAGGACGTTCCGA ATGAAGAAGCC GAAT GGCTTCTTCAA GTTTTATCTGAACGT TERM 1260 805593 - 805616 + F 91 -14 -2.58418 | opp_overlap 805597, overlap 805592 805591 AAAGGACGTTCCGAA TGAAGAAGCC GAAT GGCTTCTTCA AGTTTTATCTGAACG TERM 1261 805612 - 805597 - f 72 -9 -3.34013 | opp_overlap 805593 805592 805591 GACGTTCCGAATGAA GAAGCC GAAT GGCTTC TTCAAGTTTTATCTG TERM 1262 805802 - 805818 + F 71 -5.1 -4.53303 | overlap 805805 AGCAATGTTGCTTCT CAATCAC TTG GTGATAG TTTTATCTGAACGTA TERM 1263 805876 - 805865 - f 73 -7.2 -4.13571 | opp_overlap 805865 805869 TGAAATAAAACAGAA GGCG CTGG CGCC GCGACAGTTTTATCT TERM 1264 805869 - 805883 + F 73 -5.6 -4.53303 | opp_overlap 805865, overlap 805865 ATAAAACAGAAGGCG CTGGCG CCG CGACAG TTTTATCTGAACGTA TERM 1265 807595 - 807572 - f 77 -10.4 -3.39936 | overlap 807565 807576 ATGTAAAGTTCAGAA TGAAGAAGCC TTAT AGCTTCTTCA ACAAGTTTTATCTGA Aflv_0772 809989 - 810552 + | Transposon related protein, Zn-finger domain TERM 1266 812325 - 812344 + G 81 -7.2 -4.59109 | opp_overlap 812325 812326 812329, overlap 812326 TTCTGCTAGATGAAA TGCATCTT GCGA AAGATGCG TTTTTGCAAGATATC TERM 1267 812389 - 812404 + G 70 -7.6 -3.66908 | overlap 812383 812382 TTTTCACATGGACTC CACGAA TCCG TTCGTG TTGATTTTGGCAGGA Aflv_0773 811934 - 812734 + | Type II secretory pathway, component ExeA (predicted ATPase) TERM 1268 812735 - 812760 + F 86 -7.5 -5.04325 | opp_overlap 812740, overlap 812740 GAAACCGGGGCATAA GGAAAGGGGCC GAAC GGCTCCTCTTC TTTTTCTGATTTCCG TERM 1269 812740 - 812755 + F 73 -8.2 -3.8772 | opp_overlap 812740, overlap 812735 CGGGGCATAAGGAAA GGGGCC GAAC GGCTCC TCTTCTTTTTCTGAT TERM 1270 812816 - 812854 + F 71 -6 -4.2558 | opp_overlap 812826 AAAAAGCGTGCAAAA TCGGAGGGAATTCGCAAA CAT TTTGCGCAGTATTTCCGA TTTTCATCCAAAATA TERM 1271 813097 - 813112 + F 73 -5.4 -4.53303 | gap 1, opp_overlap 813095 ATTTGCATGAATAGC CGCATCG AGG CG-TGCG TTTTATCTGAACGTA TERM 1272 813738 - 813754 + F 78 -3.7 -5.24989 | overlap 813740 813749 GTGGGATGTAAAGTT TTTTCGT CTG ACGAATA TTTTTTCGTATATAC TERM 1273 813740 - 813752 + F 71 -6.3 -4.24891 | overlap 813738 813749 GGGATGTAAAGTTTT TTCGT CTG ACGAA TATTTTTTCGTATAT TERM 1274 815085 - 815095 + F 73 -5.4 -4.53303 | ACATTATCAACCTGC CTTG TAT CAAG TTTTATCTGAACGTA TERM 1275 815599 - 815623 + F 91 -10 -4.53303 | opp_overlap 815594 AATAAAAAACGCCAC CACGTCGCAC ACATC GTGCGAGGTG TTTTATCTGAACGTA TERM 1276 816202 - 816217 + F 71 -4.8 -4.53303 | GAAAGTTTTTTGGTT CTTTTT TTCA AAAAAG TTTTATCTGAACGTA TERM 1277 816269 - 816283 + F 77 -6.4 -4.53303 | TCAAAGGGTTTCGGT CGACGT GGC ATGTCG TTTTATCTGAACGTA TERM 1278 817187 - 817209 + G 73 -5.6 -4.45175 | overlap 817188 817189 AAAAAATATTTGATC GTTCGTTTTC GGG GAAAACGAGA TTTAGTTTTTTGCTA TERM 1279 817188 - 817208 + G 71 -9.1 -3.25478 | overlap 817187 817189 AAAAATATTTGATCG TTCGTTTTC GGG GAAAACGAG ATTTAGTTTTTTGCT TERM 1280 817189 - 817207 + G 73 -10.4 -2.5366 | overlap 817188 817187 AAAATATTTGATCGT TCGTTTTC GGG GAAAACGA GATTTAGTTTTTTGC Aflv_0774 816991 - 817752 + | hypothetical protein TERM 1281 817751 - 817788 + T 100 -15.8 -3.73008 | opp_overlap 817756, overlap 817756 GACAAGTTCGTGTAT GAAAACAGGTGTCCTG GGTTGG CAGGACACCTGTTTTG TTATGATTTTATCAT TERM 1282 817783 - 817756 - T 100 -15.7 -4.25104 | opp_overlap 817751 817756 GTTCGTGTATGAAAA CAGGTGTCCTG GGTTGG CAGGACACCTG TTTTGTTATGATTTT TERM 1283 817756 - 817783 + T 100 -15.7 -4.88258 | opp_overlap 817756, overlap 817751 GTTCGTGTATGAAAA CAGGTGTCCTG GGTTGG CAGGACACCTG TTTTGTTATGATTTT Aflv_0776 818709 - 818212 - | Predicted metal-dependent protease, XkdA family Aflv_0777 819567 - 818809 - | Membrane-associated endonuclease, HJR/Mrr/RecB family TERM 1284 818848 - 818867 + g 80 -3.6 -5.27335 | TCGTTTTGCTGCTTC TCGTTCTT TCCA AGGAATGA TTTTTGTTTCAACAA xre 819916 - 819569 - | Predicted transcriptional regulator, xre family TERM 1285 819682 - 819668 - G 70 -2.9 -5.0538 | opp_overlap 819668 CTCCATGTCAAAAAA GAAAA GGTTT TTTTC ATTGTCTGTTTTATC TERM 1286 819967 - 819952 - H 81 -2.6 -5.626 | opp_overlap 819956, overlap 819955 819956 TAGGTGACAAAAAAA CATTTT ACAC AAAACG TGTAATTTTATATTG TERM 1287 819956 - 819972 + H 74 -5.2 -4.6821 | opp_overlap 819952 819956 819955 819967, overlap 819967 TGACAAAAAAACATT TTACAC AAAAC GTGTAA TTTTATATTGACATT Aflv_0779 820054 - 820278 + | Predicted transcriptional regulator, xre family Aflv_0780 820290 - 820529 + | hypothetical protein Aflv_0781 820551 - 820808 + | hypothetical protein Aflv_0782 820819 - 820953 + | hypothetical protein TERM 1288 820984 - 820959 - f 100 -10.5 -5.61596 | overlap 820967 AGCGTCATAAAAAAA GCAGCAAGTGC GGCA ACACTTACTGC AAGGCACAGAAAAAA Aflv_0783 821086 - 821313 + | hypothetical protein TERM 1289 822963 - 822980 + G 71 -3.3 -5.00616 | opp_overlap 822949, overlap 822959 822964 ACAGCTTACAGGCGG TGAGCCG ATCA CAGCTCG TTTTTTGAGAAAGGA TERM 1290 823550 - 823537 - g 72 -8.1 -3.76492 | opp_overlap 823533 823537 TCGAATTCGAGTAAA TCGCC TATA GGCGA TACATTTACGGAAAT Aflv_0784 821323 - 823620 + | Phage associated DNA primase TERM 1291 823681 - 823658 - f 79 -9.8 -3.65351 | opp_overlap 823650 823652 TCATTTCTAGGTAAA TCCTATATAT AGCG ATATATAGGA AAATACCCTGTTTTA TERM 1292 823739 - 823750 + G 79 -3 -5.26316 | overlap 823720 823734 TAAGGAGGCTTTATA TGTT ATAT AACA TTTTTTATGAAATAG Aflv_0785 823738 - 824160 + | hypothetical protein Aflv_0786 824335 - 824514 + | hypothetical protein TERM 1293 824684 - 824711 + G 72 -7.1 -3.92075 | opp_overlap 824686 GGTTTTTCGGTTGAA GAGGACAAG CAACCTATCA CTTGTCCTC TTTGTGAATCGAAAT Aflv_0787 824630 - 824965 + | Predicted protein, contains Zn-ribbon domain Aflv_0788 825119 - 825412 + | hypothetical protein TERM 1294 825506 - 825529 + F 85 -7.5 -4.93898 | opp_overlap 825506 TTTGACCATCTAAAA TCGAGTGAG CCAAAA TTCACTCGA TTTTTGTCATAATAT TERM 1295 825529 - 825506 - f 73 -6.8 -4.21194 | opp_overlap 825506 TTTGACCATCTAAAA TCGAGTGA GCCAAAAT TCACTCGA TTTTTGTCATAATAT TERM 1296 825531 - 825551 + F 93 -5.5 -5.56568 | opp_overlap 825542, overlap 825547 CAAAATTCACTCGAT TTTTGTCAT AAT ATGACCAAA TTTTTTTGGTGATAT Aflv_0789 825599 - 825826 + | hypothetical protein Aflv_0790 825959 - 826105 + | hypothetical protein Aflv_0791 826108 - 826266 + | hypothetical protein Aflv_0792 826543 - 826734 + | hypothetical protein TERM 1297 826743 - 826758 + F 90 -9 -5.14563 | opp_overlap 826738 826743, overlap 826755 GCGATAAGAGGAAAA GGAGGA GCGA TCCTCC TTTTTTCATAGAAAG TERM 1298 826758 - 826743 - f 86 -9 -4.46656 | opp_overlap 826743 826755, overlap 826738 GCGATAAGAGGAAAA GGAGGA GCGA TCCTCC TTTTTTCATAGAAAG TERM 1299 827889 - 827871 - g 84 -5.2 -5.38321 | AAATACTACAAAAAA CACCCTGA TGA TCCGGATG GGAGTGGGGAAGGAT Aflv_0793 826791 - 827906 + | hypothetical protein Aflv_0794 827903 - 829129 + | Uncharacterized conserved protein, containing bacterial Ig-like protein TERM 1300 829492 - 829502 + G 71 -3.2 -5.04265 | AAATTGGCGTGCTGG CGGT GAA ACTG TTTTTGCTCTTTTTT Aflv_0795 829272 - 829757 + | hypothetical protein Aflv_0796 829757 - 830038 + | hypothetical protein TERM 1301 830285 - 830257 - g 78 -5.9 -4.82661 | opp_overlap 830282, overlap 830282 ACGAACAAAAAACAA GCGACATTCAACG CAT CGATGAAATTCGC GACAATGCGATATAT Aflv_0797 830169 - 830570 + | hypothetical protein Aflv_0798 830552 - 830725 + | hypothetical protein Aflv_0799 830732 - 831085 + | hypothetical protein Aflv_0800 831085 - 831741 + | Uncharacterized ATPase Aflv_0801 831710 - 832057 + | hypothetical protein TERM 1302 832127 - 832116 - g 100 -7.2 -6.11392 | opp_overlap 832115 AAAGAAATAAAAAAA GCGC TAAA GCGC AATTATGGATTTTTT TERM 1303 832248 - 832262 + G 74 -4.2 -4.93296 | overlap 832249 GATGACGATGAATTG GGCATG TTA CATGCG TTTTTGTCATCATAC Aflv_0802 832044 - 832400 + | hypothetical protein TERM 1304 832552 - 832579 + F 100 -9.3 -5.75822 | opp_overlap 832552 ATCATCGATTAGGAA CAGATAGCATG CTTGTA CATGTTATCTG TTTTTTTCATTTGTA TERM 1305 834051 - 834025 - g 79 -6.6 -4.67904 | overlap 834027 834048 CAGCAACGTGAAAAA GAGCTGATTGAA CAA TACAATCAGCTG GAACAACAACTAAAA TERM 1306 834049 - 834027 - g 83 -9.2 -3.94933 | overlap 834025 834048 GCAACGTGAAAAAGA GCTGATTGAA CAA TACAATCAGC TGGAACAACAACTAA spoIVCA 832738 - 834234 + | Site-specific recombinase SpoIVCA TERM 1307 834234 - 834252 + T 90 -8.9 -4.89729 | opp_overlap 834237 AATTCACTTATTTTA GAACGCT TAAAC AGCGTTC TTTTTACATTTTATA spoIVCB 834629 - 834240 - | RNA polymerase sporulation-specific sigma factor (sigma-K), SpoIVCB TERM 1308 834401 - 834415 + g 73 -8.5 -3.68674 | overlap 834399 TTGAAATTAAATCTT CCGGG TCCTC CCCGG TGTTTTCAAACTTTT TERM 1309 835493 - 835511 + G 86 -6 -5.27335 | overlap 835495 835496 GCTTGTTGTGAATGT TGTGGCAA TTG TTGCCGTA TTTTTCTTTGAACAA TERM 1310 835495 - 835509 + G 72 -6.4 -4.27026 | overlap 835493 835496 TTGTTGTGAATGTTG TGGCAA TTG TTGCCG TATTTTTCTTTGAAC TERM 1311 836091 - 836075 - g 75 -3 -5.21683 | opp_overlap 836078 ACCGAAAAAAACAAA CATTCG TTATC CAAATG GCGATATATTGACAG Aflv_0805 834783 - 836111 + | Trk-type K+ transport system, membrane component TERM 1312 836112 - 836140 + T 100 -16.1 -3.52079 | opp_overlap 836117, overlap 836117 ATATTGACAGGATGA AAAAAGCGAGGGG CTG CCCCTCGCTTTTA TTGTGTCGGCTCTTG TERM 1313 836117 - 836135 + T 100 -16 -4.84311 | opp_overlap 836117, overlap 836112 GACAGGATGAAAAAA GCGAGGGG CTG CCCCTCGC TTTTATTGTGTCGGC TERM 1314 836135 - 836117 - T 100 -16 -5.20216 | opp_overlap 836117 836112 GACAGGATGAAAAAA GCGAGGGG CTG CCCCTCGC TTTTATTGTGTCGGC motB 836893 - 836138 - | Flagellar motor protein B TERM 1315 836848 - 836872 + g 87 -5 -5.47914 | GAATGAGCCAGCTTT CATCGACATG TTCTT CATGATGATG TTTTTTATGCTTTTT motA 837791 - 836877 - | Flagellar motor protein A TERM 1316 837793 - 837771 - G 100 -8.5 -5.86061 | opp_overlap 837771 TTGTACGAAAAAAAA CCTTGAAGT GGAAA ACTCCAAGG TTTAAATTTTCTTTA pssA 838334 - 837795 - | Phosphatidylserine synthase TERM 1317 838676 - 838666 - g 78 -2.4 -5.44119 | CGTACGTTAAAAAAA GGGC TTC GTCC GATCGATACACATCC psd 838459 - 839256 + | Phosphatidylserine decarboxylase TERM 1318 839262 - 839247 - T 91 -6.1 -5.45802 | opp_overlap 839246 GGCGCAAAAGAAAAA GAGCC AATAGA GGCTC AATTATGATGTTTGT sda 839444 - 839265 - | Histidine kinase KinA inhibitor Sda TERM 1319 839502 - 839485 - H 70 -2.7 -5.05505 | opp_overlap 839485 839488, overlap 839488 ACCATAAATCAAAAA TAAGAAC AATC GTTCTGA TTATCCACATGTGAT Aflv_0811 839684 - 840196 + | Predicted hydrolase of the HAD superfamily TERM 1320 840961 - 840972 + GF 78 -4.4 -5.16237 | opp_overlap 840961 TATCAATTGAACGAA CAAC AGAC GTTG TTTTTTGGTGGGCTT Aflv_0812 840187 - 841305 + | Predicted GTPase aroD 841253 - 842152 + | Shikimate 5-dehydrogenase Aflv_0814 842146 - 842439 + | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein TERM 1321 842704 - 842714 + GF 73 -5.4 -4.63218 | opp_overlap 842700, overlap 842700 GCGATCATATACGTA CGAT ACG ATCG TTTTGTTGAAGCAAA Aflv_0815 842408 - 843016 + | Nicotinic acid mononucleotide adenylyltransferase Aflv_0816 843006 - 843581 + | Predicted HD superfamily hydrolase involved in NAD metabolism Aflv_0817 843578 - 843934 + | Uncharacterized conserved protein, Iojap family TERM 1322 844168 - 844185 + G 76 -6.9 -4.56775 | ATGAAAGCAGAGGAG CGGGGGG TAAA CCTCTCG TTTTTCCAGCAAGAT Aflv_0818 843931 - 844671 + | SAM-dependent methyltransferase TERM 1323 844669 - 844705 + T 100 -19.1 -3.55444 | opp_overlap 844669 844673, overlap 844673 TTCATTGCGCAAAAA TAAAGATCCCAAAAGTG ACT TACTTTTGGGATCTTTA TTTAACGAATAAGCA TERM 1324 844705 - 844669 - T 100 -18.4 -4.58395 | opp_overlap 844669 844673, overlap 844673 TTCATTGCGCAAAAA TAAAGATCCCAAAAGT GACTT ACTTTTGGGATCTTTA TTTAACGAATAAGCA TERM 1325 844701 - 844673 - T 100 -14.8 -4.85782 | opp_overlap 844669 844673, overlap 844669 TTGCGCAAAAATAAA GATCCCAAAAGT GACTT ACTTTTGGGATC TTTATTTAACGAATA TERM 1326 844673 - 844701 + T 100 -15.5 -4.42062 | opp_overlap 844673 844669, overlap 844669 TTGCGCAAAAATAAA GATCCCAAAAGTG ACT TACTTTTGGGATC TTTATTTAACGAATA comER 845563 - 844733 - | Late competence protein ComER (pyrroline-5-carboxylate reductase) comEA 845640 - 846236 + | Late competence protein ComEA (DNA binding and uptake) TERM 1327 846231 - 846216 - f 82 -4 -5.42198 | CTTGAAAAAATAAAA GAACAA ATTG TCGTTC GCTAAAATTGACGAT TERM 1328 846313 - 846325 + G 76 -7.7 -4.20918 | GGGATCAATATTTTA TGGCT CAA AGCCA TTTATTAGCGTTACG comEB 846282 - 846749 + | Late competence protein ComEB (DNA binding and uptake) TERM 1329 846770 - 846788 + F 80 -10.2 -3.61902 | CGTTTATGTGGCGAT GGCGGCCG TTT TGGCCGTC TTGTCTATGCTAACA Aflv_0822 846811 - 846927 + | hypothetical protein TERM 1330 848347 - 848331 - g 71 -2.3 -5.09173 | opp_overlap 848331 GAACATTGGAAAAAA CGAAA GCAATCG TTTCG TGTTGGGGAAGATGT comEC 846909 - 849002 + | Late competence protein ComEC (membrane metal-binding protein and hydrolase of the metallo-beta-lactamase superfamily) TERM 1331 849037 - 849017 - T 100 -8.3 -5.62045 | opp_overlap 849017 ATATACAAGAAAAAA GAGACTGCA ACA CGCAATCTC TTTTAGGTGTCCATT Aflv_0824 849212 - 849051 - | hypothetical protein TERM 1332 849153 - 849165 + g 82 -3.3 -5.47399 | overlap 849132 AACGGCGTCGTTGCG CGTAC ATT GAACG TTTTTTTCAAATTCG TERM 1333 849302 - 849339 + H 88 -11.5 -3.6682 | gap 1, opp_overlap 849298 849300 849296, overlap 849300 849313 AAAGATAAAGATACC CGTTGGATAAACGAGTTC CTA GGGCTTGTTT-TCCAACG TTTAAATAAATGGGA TERM 1334 849351 - 849381 + H 75 -9.8 -3.34043 | opp_overlap 849351 AACGTTTAAATAAAT GGGAGTTGGCGA TGCTCAT TTGCTAACTCCC TTGTAAAATGCTCCG TERM 1335 849539 - 849511 - g 86 -8.9 -4.25458 | overlap 849514 AAGCGTATGAACAAA TTATTCGTCGGAC GTT GTCAGACGAAGAA CGTGAATGGAATGTT TERM 1336 849536 - 849514 - g 77 -10.6 -3.12942 | overlap 849511 CGTATGAACAAATTA TTCGTCGGAC GTT GTCAGACGAA GAACGTGAATGGAAT TERM 1337 849604 - 849617 + G 86 -6.7 -5.00616 | overlap 849600 TGGCACTTGAAGATG CGGAA ACGC TTCCG TTTTTTGGAGAGAGG Aflv_0825 849489 - 850406 + | DNA polymerase III, delta subunit TERM 1338 850400 - 850422 + T 89 -9.2 -4.77165 | opp_overlap 850398 850395 850394 TTTCTTAAAGCTACA GCGGTAGA GAAACAA TCTACCGC TTTTGTTGTAGCGCC Aflv_0826 851141 - 850416 - | Transcriptional regulator, Crp family TERM 1339 851145 - 851122 - G 100 -8.9 -4.87318 | opp_overlap 851111 851122 CCCAAAACGGAAAAA CAGCTTGCC GTGTAT GACAAGCTG TTTTTTCATTATGCT TERM 1340 851122 - 851145 + g 91 -7.4 -5.33848 | opp_overlap 851122, overlap 851111 CCCAAAACGGAAAAA CAGCTTGCCG TGTA TGACAAGCTG TTTTTTCATTATGCT rpsT 851462 - 851154 - | Ribosomal protein S20 TERM 1341 851266 - 851282 + g 81 -7.3 -4.62904 | opp_overlap 851266, overlap 851256 TTTTTCGTTGCAAAT GCGAAAG CTT CTTTTGC TTTTTCCACGTCTTT gpr 851613 - 852716 + | Germination protease TERM 1342 853028 - 853038 + G 80 -2.6 -5.44119 | AAACAACAATTCCCG TATT CTC AATA TTTTTTTCAAGTGAC TERM 1343 853432 - 853445 + G 70 -8.1 -3.71848 | overlap 853440 AGAATTGGAGAAGCG CGGCA TTGG TGCCG TTGTTGATACAACGG TERM 1344 853440 - 853462 + G 72 -7.1 -3.93583 | gap 1, overlap 853432 AGAAGCGCGGCATTG GTGCCGTTGT TGAT ACAACGG-AC TTTATCAGTAAATTG spoIIP 852782 - 853951 + | Stage II sporulation protein P Aflv_0830 853952 - 854266 + | hypothetical protein TERM 1345 854252 - 854280 + F 90 -5.3 -5.53288 | opp_overlap 854257, overlap 854257 ATGCTCTCATTGATG CAAAAGGCAGGAT AGC ATTCCGCCTTTTC TTTTTTTGCGTTGAA TERM 1346 854257 - 854275 + F 90 -5.2 -5.55855 | opp_overlap 854257, overlap 854252 CTCATTGATGCAAAA GGCAGGAT AGC ATTCCGCC TTTTCTTTTTTTGCG lepA 854361 - 856187 + | Membrane GTPase LepA TERM 1347 856209 - 856185 - f 95 -11.5 -4.77438 | opp_overlap 856188, overlap 856188 ATGGACGACCAAAAA TAACCGCAGAA TCA TTCTGCGGTTT TTTTATATAGAAAAG TERM 1348 856188 - 856206 + F 100 -13.2 -5.71712 | opp_overlap 856185 856188 GACGACCAAAAATAA CCGCAGAA TCA TTCTGCGG TTTTTTTATATAGAA TERM 1349 856206 - 856188 - f 100 -13.2 -4.49314 | opp_overlap 856188, overlap 856185 GACGACCAAAAATAA CCGCAGAA TCA TTCTGCGG TTTTTTTATATAGAA hemN 856226 - 857377 + | Coproporphyrinogen III oxidase hrcA 857455 - 858489 + | Transcriptional regulator of heat shock gene TERM 1350 858503 - 858527 + F 90 -10.7 -4.21827 | opp_overlap 858501 858504, overlap 858504 858525 AGCGATGTCAATATT ATGGATGGGGA ATT TCCCCATCCGC TTTTCAAGTGTTTAA TERM 1351 858504 - 858526 + F 95 -14.2 -3.12373 | opp_overlap 858501 858504, overlap 858503 858525 GCGATGTCAATATTA TGGATGGGGA ATT TCCCCATCCG CTTTTCAAGTGTTTA TERM 1352 858526 - 858504 - f 81 -12 -2.75074 | opp_overlap 858504 858503 858525, overlap 858501 GCGATGTCAATATTA TGGATGGGGA ATT TCCCCATCCG CTTTTCAAGTGTTTA grpE 858535 - 859146 + | Molecular chaperone GrpE (heat shock protein) TERM 1353 859466 - 859425 - g 71 -6.9 -4.2008 | gap 1, opp_overlap 859424 859423 859457, overlap 859413 859426 859455 859457 ATACACCGCAACAAA TTTCTGCG-ATGATTTTA CAATACT TAAAATCATACGCAGAAG CGTATTTAGGTGAGC TERM 1354 859465 - 859426 - g 77 -10.4 -3.11325 | gap 1, opp_overlap 859424 859423 859457, overlap 859413 859425 859455 859457 TACACCGCAACAAAT TTCTGCG-ATGATTTTA CAATACT TAAAATCATACGCAGAA GCGTATTTAGGTGAG TERM 1355 860675 - 860663 - g 72 -6.3 -4.25859 | overlap 860672 CGGAAGCGAAAAGAA GAAGT AGA ACTTC GCAACGAAGCAGACC TERM 1356 860684 - 860672 - g 70 -7.7 -3.65786 | overlap 860663 AAAGAAGAAGTAGAA CTTCG CAA CGAAG CAGACCATCTCATTT TERM 1357 860941 - 860927 - g 78 -4.2 -5.16572 | overlap 860929 AGCGAAGGCAAAAAA GACGAC AAC GTTGTC GATGCGGAATTTGAA TERM 1358 860942 - 860929 - g 71 -6.7 -4.20888 | overlap 860927 CGAAGGCAAAAAAGA CGACA ACGT TGTCG ATGCGGAATTTGAAG dnaK 859160 - 860977 + | Chaperone DnaK (HSP70) TERM 1359 861017 - 860989 - f 100 -6.8 -5.5454 | gap 1, opp_overlap 860989 GTAAACAAACAAAAA GTCAAAGTC-AGG CCTG CCTTGGCTTTGAC TTTTTTGCTATGGAA TERM 1360 860989 - 861017 + F 100 -10.4 -5.21709 | opp_overlap 860989 GTAAACAAACAAAAA GTCAAAGTCAGG CCTGC CTTGGCTTTGAC TTTTTTGCTATGGAA dnaJ 861103 - 862230 + | DnaJ-class molecular chaperone with C-terminal Zn finger domain Aflv_0837 862254 - 863192 + | Ribosomal protein L11 methylase TERM 1361 863306 - 863321 + GF 70 -5.4 -4.35483 | GTGATGCGCATGAAT GAAGGT GATC GCCTTC TTTGTTGTAATGAAC TERM 1362 863797 - 863783 - gf 70 -5.7 -4.30833 | opp_overlap 863783 863782 863772, overlap 863772 CAAACGATGAACAAA GAGGA CTCTC TCCTC ATCGTTTTTGGACCA Aflv_0838 863198 - 863956 + | hypothetical protein Aflv_0839 863916 - 865319 + | 2-methylthioadenine synthetase rpsU 865378 - 865593 + | Ribosomal protein S21 Aflv_0841 865608 - 866051 + | hypothetical protein TERM 1363 866075 - 866054 - f 100 -13.1 -4.28774 | opp_overlap 866054 GCATTTAAGTTAAAA CACCTTACG AACT CGTAAGGTG TTTTTTCTGTTTTTG TERM 1364 866054 - 866075 + F 100 -13.1 -5.69068 | opp_overlap 866054 GCATTTAAGTTAAAA CACCTTACG AACT CGTAAGGTG TTTTTTCTGTTTTTG TERM 1365 866084 - 866094 + F 100 -4 -6.11229 | TAAGGTGTTTTTTCT GTTT TTG AAAC TTTTTTTCTTTTCAT Aflv_0842 866122 - 866802 + | Peptidase S14 family, clpP-like protein Aflv_0843 866799 - 867788 + | hypothetical protein Aflv_0844 867796 - 868131 + | Uncharacterized conserved protein, probably secreted TERM 1366 868142 - 868176 + F 90 -8.7 -5.02323 | gap 1, opp_overlap 868141 868142 AATAAGTGCTATAAC CCCCATTTCG-CTCAT ACAT ATGAGATGAAAGGGGG TTTTGTTTATGATCG Aflv_0845 868179 - 868469 + | hypothetical protein TERM 1367 869321 - 869332 + G 78 -2.2 -5.44721 | GTTCGTTTTTGGTCG TGGA AAAT TCCG TTTTTTTGGGATCAT TERM 1368 869469 - 869457 - g 74 -4.8 -4.85782 | GGCGCGAAAAAGAAA TCGC TGTTC GCGA ATATTCATACGATCA Aflv_0846 868481 - 869668 + | Stage IV sporulation protein YqfD TERM 1369 870014 - 869992 - gf 75 -3.3 -5.1361 | overlap 870005 AGAAATTGGAAAAAA CGCGAAAGG AAAAG CGATTCGCG TCAAAACGCTCGGTC TERM 1370 870023 - 870005 - gf 71 -5.2 -4.564 | overlap 869992 870021 AACGCGAAAGGAAAA GCGATTCG CGT CAAAACGC TCGGTCAGCGTCAAT TERM 1371 870309 - 870332 + GF 79 -11 -3.15999 | opp_overlap 870303 870308 AACGATTAATTGAAC GCGGTGCAAT TGAA ATTGCTCCGC TTGCCTATATGCGCG phoH 869672 - 870634 + | Phosphate starvation-inducible protein PhoH, predicted ATPase TERM 1372 870868 - 870854 - gf 89 -11.4 -3.51976 | opp_overlap 870842, overlap 870842 870843 870850 AATTCGCGAAATCAA CCGCGA TTA TCGCGG GAAAGATCAGCCGAC Aflv_0848 870576 - 871160 + | Predicted metal-dependent hydrolase dgkA 871167 - 871553 + | Diacylglycerol kinase era 871609 - 872529 + | GTPase Aflv_0851 872554 - 872772 + | hypothetical protein TERM 1373 873344 - 873359 + G 83 -9 -4.21768 | GATCCACACCGCATT CCGATG ACGC CATCGG TTTTAAAATTACTTC recO 872747 - 873553 + | Recombinational DNA repair protein (RecF pathway) TERM 1374 873563 - 873540 - f 77 -8.2 -4.16943 | CGTTAGACGGTAAAA GCGGACAA ATATAGCG TTGTCCGC TTCCCACTTTTGTTT Aflv_0853 873675 - 874274 + | N-terminal HTH domain arsR family and two C-terminal CBS domains TERM 1375 875053 - 875037 - g 86 -8 -4.69214 | GATGTAACAAACAAA GCCGTT GAAGA AACGGC GAACGTCATTATGAA Aflv_0854 874287 - 875093 + | hypothetical protein TERM 1376 875140 - 875091 - f 84 -6.7 -4.87318 | gap 1, opp_overlap 875097 875103, overlap 875103 CGCAAAAGGGAAAAA TAAGAAGACGAAGCACA-ATCACA ACG TGTGATATGTGCTTTTCCTTTTTA TAAAAACATTTGTAT TERM 1377 875097 - 875134 + F 75 -5.7 -4.83169 | gap 1, opp_overlap 875091 875103, overlap 875103 AGGGAAAAATAAGAA GACGAAGCACA-ATCACA ACG TGTGATATGTGCTTTTCC TTTTTATAAAAACAT TERM 1378 875128 - 875103 - f 77 -9.9 -3.51206 | gap 1, opp_overlap 875097 875103, overlap 875091 AAATAAGAAGACGAA GCACA-ATCACA ACG TGTGATATGTGC TTTTCCTTTTTATAA TERM 1379 875103 - 875128 + F 93 -9.9 -4.82678 | gap 1, opp_overlap 875103 875091, overlap 875097 AAATAAGAAGACGAA GCACA-ATCACA ACG TGTGATATGTGC TTTTCCTTTTTATAA TERM 1380 876846 - 876815 - g 70 -7.4 -3.85817 | gap 1 ATGTTGCGCGACAAA TCGATCGCAT-TTAC GGT GCAAGAGGCGATCGA AGGCGCGTTCAACAT dnaG 875390 - 877204 + | DNA primase (bacterial type) TERM 1381 877307 - 877297 - g 74 -6.8 -4.258 | opp_overlap 877289 877297 TTACTTATGAAGAAA TCGC TGA GCGA TTATCCTCGTTTGAT sigA 877197 - 878315 + | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) TERM 1382 878363 - 878326 - f 70 -8.7 -3.32066 | opp_overlap 878326 878330, overlap 878330 AATAACCGTTTACAA GAAATAGTTTACTTC TTACAATG GAAGTAAGCTATTTC TTTATTTAGGAAGGA TERM 1383 878326 - 878363 + F 93 -11.6 -4.41348 | opp_overlap 878326 878330, overlap 878330 AATAACCGTTTACAA GAAATAGTTTACTTCT TACAAT GGAAGTAAGCTATTTC TTTATTTAGGAAGGA TERM 1384 878330 - 878359 + F 81 -6.6 -4.78326 | opp_overlap 878330 878326, overlap 878326 ACCGTTTACAAGAAA TAGTTTACTTCT TACAAT GGAAGTAAGCTA TTTCTTTATTTAGGA TERM 1385 878424 - 878412 - g 74 -4.9 -4.88646 | AAAAACGAAAAGAAA TCATT ATC AATGA AATTAAATATTGGAA Aflv_0857 878390 - 878923 + | hypothetical protein cccA 879033 - 879395 + | Cytochrome c550 TERM 1386 879410 - 879431 + F 100 -9.5 -5.25735 | opp_overlap 879409 879410 AACGAAGCGAAAAAG TCCCTTTAC TTCG GTGAAGGGA TTTTTCGTTTTTTGC Aflv_0859 879474 - 880190 + | Predicted SAM-dependent methyltransferase Aflv_0860 880187 - 881305 + | hypothetical protein TERM 1387 881325 - 881310 - T 91 -6.1 -5.36441 | opp_overlap 881310 CGTTCATATAAAAAA GAGGC TTATTC GCCTC TTTTTTTCACTTTTG TERM 1388 881310 - 881325 + T 95 -6.1 -5.61824 | opp_overlap 881310 CGTTCATATAAAAAA GAGGC TTATTC GCCTC TTTTTTTCACTTTTG ispH 882262 - 881315 - | 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH Aflv_0862 882797 - 882330 - | hypothetical protein Aflv_0863 882948 - 884228 + | ATP-dependent RNA helicase Aflv_0864 884242 - 885129 + | Endonuclease IV TERM 1389 885162 - 885119 - Tf 72 -3.2 -5.00884 | gap 1, opp_overlap 885129 885132, overlap 885132 ATGTTCGTGAAAAAA TTGTTGAGTA-GAAGGCTGTC ATC GGCAGCCTTCTTACTGTATAA ATTGGCGAATGAGGT TERM 1390 885129 - 885151 + TF 100 -14.2 -3.33708 | opp_overlap 885119 885132, overlap 885132 AAAAATTGTTGAGTA GAAGGCTGTC ATC GGCAGCCTTC TTACTGTATAAATTG TERM 1391 885132 - 885148 + TF 84 -10.1 -3.80018 | opp_overlap 885132 885119, overlap 885129 AATTGTTGAGTAGAA GGCTGTC ATC GGCAGCC TTCTTACTGTATAAA Aflv_0865 885505 - 885152 - | hypothetical protein Aflv_0866 885473 - 886366 + | hypothetical protein TERM 1392 887006 - 886989 - g 74 -6.3 -4.50627 | opp_overlap 886989 GACCGATTAAATAAA CAACATC ACAT GACGTTG CTTCTTGTTACTCAC Aflv_0867 886425 - 887180 + | ABC-type Mn2+/Zn2+ transport system, ATPase component Aflv_0868 887195 - 888028 + | ABC-type Mn2+/Zn2+ transport system, permease component TERM 1393 888434 - 888483 + G 100 -15.3 -5.03945 | gap 1, opp_overlap 888446 888449, overlap 888443 TACGGCATGTGTCCG CTG-TGCCAACAACAAGCTGACGT GTA ATGTCAGCTTGTTGTTGTAAGCAG TTTTTCTACTTGTTG zur 888035 - 888460 + | Zn2+ uptake regulation protein TERM 1394 888443 - 888473 + T 100 -17.8 -3.3341 | opp_overlap 888446 888449, overlap 888434 TGTCCGCTGTGCCAA CAACAAGCTGACGT GTA ATGTCAGCTTGTTG TTGTAAGCAGTTTTT TERM 1395 888470 - 888446 - T 88 -11.5 -3.61398 | opp_overlap 888443 888434, overlap 888449 CCGCTGTGCCAACAA CAAGCTGACGT GTA ATGTCAGCTTG TTGTTGTAAGCAGTT TERM 1396 888467 - 888449 - T 71 -7.4 -3.9461 | opp_overlap 888443 888434, overlap 888446 CTGTGCCAACAACAA GCTGACGT GTA ATGTCAGC TTGTTGTTGTAAGCA Aflv_0870 889038 - 888463 - | Putative nucleotidase, HAD superfamily Aflv_0871 889170 - 889502 + | Uncharacterized membrane protein TERM 1397 889504 - 889526 + T 100 -15 -5.34381 | opp_overlap 889504 889507 TCCGATTTTGGTAAA TAAGAGGGGA ATG TCCCCTCTTA TTTTTGTTTCCCTTT TERM 1398 889526 - 889504 - T 100 -15 -3.54424 | opp_overlap 889504, overlap 889507 TCCGATTTTGGTAAA TAAGAGGGGA ATG TCCCCTCTTA TTTTTGTTTCCCTTT TERM 1399 889523 - 889507 - T 93 -12.3 -3.9122 | opp_overlap 889504, overlap 889504 GATTTTGGTAAATAA GAGGGGA ATG TCCCCTC TTATTTTTGTTTCCC ispG 890618 - 889524 - | 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase TERM 1400 890448 - 890411 - G 72 -9.3 -3.16564 | TTTTTATTTCAGCAA TCGCATCTGC-TGCCCT TTCATC AGGGCAAGC-GACGCGA ACAATTTGGCATCCA TERM 1401 890496 - 890512 + g 73 -3.7 -4.93296 | opp_overlap 890494 AATTTGGGCAACAGT CGCAT CGACGTC ATGCG TTTTTGTCGTCGTCA Aflv_0873 891027 - 890698 - | Uncharacterized LisM domain containing protein mcpB 891149 - 892900 + | Methyl-accepting chemotaxis sensor protein TERM 1402 892924 - 892902 - T 76 -9.2 -3.72363 | opp_overlap 892902 892905 892921, overlap 892905 CATTTAAATTGTAAA GAAGCAGG TCATCAG CCTGCTTC TTTGACGGAAGGAAG TERM 1403 892902 - 892924 + T 77 -9.9 -3.53012 | opp_overlap 892902 892905, overlap 892905 892921 CATTTAAATTGTAAA GAAGCAGGT CATCA GCCTGCTTC TTTGACGGAAGGAAG Aflv_0875 893683 - 892913 - | Uncharacterized membrane protein TERM 1404 893505 - 893523 + g 73 -3.8 -5.02323 | overlap 893497 TCTTCGGTCAATAGT TGATGGGT TGA GCCGATCA TTTTGTTTATACTGA TERM 1405 893879 - 893901 + H 100 -12.1 -5.76949 | TGCAGGGTCCATTTT CCTCGCTAA GTGAG TTAGCGAGG TTTTTTTTGCAAATA sodA 894044 - 894652 + | Superoxide dismutase TERM 1406 894660 - 894684 + GF 100 -15.1 -5.04597 | opp_overlap 894660 CGAAATAATGATGAA GAGCTCGGCAA ATT TTGTCGAGCTC TTTTTGTATATCGCT TERM 1407 894684 - 894660 - gf 100 -12.9 -3.35358 | opp_overlap 894660 CGAAATAATGATGAA GAGCTCGGCAA ATT TTGTCGAGCTC TTTTTGTATATCGCT TERM 1408 894893 - 894879 - gf 76 -4.3 -5.0133 | opp_overlap 894887 TATGTTTGGAAAAAA GTGAA CAGTT TTCAC GCCCTAGGTGTGTAC TERM 1409 895302 - 895319 + GF 88 -6.9 -5.10461 | CTATGTTTGTTTATC GCTGCGG TGAT CCTCAGC TTTTTCTTACATCGA TERM 1410 895609 - 895624 + GF 72 -6.2 -4.28925 | overlap 895606 CGATTTTATTTGGTG GCATAT TGTT ATATGC TTCTGTTTTTTTACT Aflv_0877 894603 - 895958 + | Permease of the major facilitator superfamily TERM 1411 897421 - 897404 - g 79 -8.5 -4.13014 | TTTACATGTTTAAAA CAGCAAT AGCG ATTGCTG GCTCTACGTACCGCC pbpA 896020 - 898173 + | Cell division protein FtsI/penicillin-binding protein 2 TERM 1412 898308 - 898298 - g 78 -4 -5.20606 | AAAGATGAAGAAAAA CAAA TGG TTTG CACTCGCAGGTGTAA pstS 898203 - 899249 + | ABC-type phosphate transport system, periplasmic component TERM 1413 899298 - 899255 - f 100 -13.3 -4.15366 | opp_overlap 899263 899269, overlap 899261 ATTGAAATAACGAAA CGTAAAGATGAGAAGCGAC ACCACA GTCGCTTCTCATCTTGCCA TGAATTTGGAAAGGG TERM 1414 899292 - 899261 - f 100 -17.5 -3.89938 | opp_overlap 899263 899269, overlap 899255 ATAACGAAACGTAAA GATGAGAAGCGAC ACCACA GTCGCTTCTCATC TTGCCATGAATTTGG TERM 1415 899263 - 899290 + G 100 -14.3 -3.07236 | opp_overlap 899261 899255, overlap 899269 AACGAAACGTAAAGA TGAGAAGCGAC ACCACA GTCGCTTCTCA TCTTGCCATGAATTT pstC 899262 - 900275 + | ABC-type phosphate transport system, permease component pstA 900278 - 901159 + | ABC-type phosphate transport system, permease component pstBB 901186 - 901995 + | ABC-type phosphate transport system, ATPase component TERM 1416 902021 - 902000 - f 100 -10.1 -5.252 | opp_overlap 902000 GATTTGGATAAAAAA TCGTGCGGG TACG CTCGCACGA TTTTTTCAAAATAAA TERM 1417 902000 - 902021 + F 100 -12.3 -5.03314 | opp_overlap 902000 GATTTGGATAAAAAA TCGTGCGGG TACG CTCGCACGA TTTTTTCAAAATAAA TERM 1418 902233 - 902209 - g 74 -4.4 -5.05079 | AGAACGATACAAAAA TTGATTTACT TGATG AGGAAATCAA CGATTTTGCGATTTT Aflv_0883 902049 - 902708 + | Phosphate uptake regulator TERM 1419 902705 - 902748 + T 76 -4.7 -5.03747 | opp_overlap 902716, overlap 902713 902716 TTACGATTTAAACGA TTAAAGCAAAAGGATGTCC AACAGC GGACATCCTTATTTTGTAA TTTTTTGGGCGATTT TERM 1420 902713 - 902740 + T 88 -8.5 -4.76171 | opp_overlap 902716, overlap 902705 902716 TAAACGATTAAAGCA AAAGGATGTCC AACAGC GGACATCCTTA TTTTGTAATTTTTTG TERM 1421 902737 - 902716 - T 91 -10.9 -4.59376 | opp_overlap 902713 902705 902716 ACGATTAAAGCAAAA GGATGTCCA ACAG CGGACATCC TTATTTTGTAATTTT TERM 1422 902716 - 902737 + T 90 -10.2 -4.42088 | opp_overlap 902716, overlap 902713 902705 ACGATTAAAGCAAAA GGATGTCC AACAGC GGACATCC TTATTTTGTAATTTT Aflv_0884 903151 - 902738 - | hypothetical protein TERM 1423 903012 - 903030 + g 70 -6 -4.27441 | AGTTTTTCAGCAAGT TCATTTCG TTC CGCAATGA TTTGTTCATACTGCT Aflv_0885 903474 - 903148 - | Uncharacterized conserved protein, probably secreted Aflv_0886 903545 - 905992 + | Nucleoside-diphosphate-sugar pyrophosphorylase fused to phosphomannomutase rpmGA 906007 - 906222 + | Ribosomal protein L33 TERM 1424 906249 - 906220 - f 70 -9.4 -2.71001 | opp_overlap 906220, overlap 906219 906223 CATCGTGAAACGAAG TAAGCAGTAGGA TTTTTT TCCTGCTGCTTA TTTTTTTACGAAAGA TERM 1425 906220 - 906249 + F 100 -11.6 -5.40072 | opp_overlap 906220 906219 906223 CATCGTGAAACGAAG TAAGCAGTAGGA TTTTTT TCCTGCTGCTTA TTTTTTTACGAAAGA Aflv_0888 906276 - 906845 + | 5-formyltetrahydrofolate cyclo-ligase TERM 1426 906901 - 906887 - f 85 -5.8 -5.34555 | opp_overlap 906887 GTACAGGAGAAAAAA TTAACA AAA TGTTAA TAATTCATGCCACAT ldh 906979 - 907956 + | L-lactate dehydrogenase TERM 1427 907956 - 907978 + F 93 -9.9 -5.04325 | opp_overlap 907956 CGTTGGGTTGCAATA GGTTGTCTC ATTCC GAGGCAACC TTTTTATAATTTCAA Aflv_0890 908024 - 908218 + | hypothetical protein Aflv_0891 908254 - 909807 + | Serine protease of Rhomboid family, contains TPR repeats Aflv_0892 910710 - 909778 - | hypothetical protein TERM 1428 910198 - 910229 + g 81 -5.2 -5.12617 | gap 1, opp_overlap 910198 AAGTGGTGCGAAGGA TGAGTCGATGACGTA TAA TACGTCCCC-ACTCA TTTTTTGACTGCTTC TERM 1429 911601 - 911591 - g 73 -5.4 -4.64048 | GAGTATAGAAATAAA CCAA TTG TTGG CGCATATTTACGCTT TERM 1430 911724 - 911746 + G 70 -7.8 -3.57309 | opp_overlap 911723 911724, overlap 911711 911727 CGTTTGTCGCAAAAT CAACGGAA GGGAATA TTCCGTTG TTTGGACAAATTTTA TERM 1431 912173 - 912163 - g 71 -3.2 -5.01732 | AATTCCGTTAAAAAA TCGA CGA CCGA CTGTCTTGCATCCGA spoVAF 910751 - 912205 + | Stage V sporulation protein AF Aflv_0894 912306 - 912548 + | hypothetical protein glcK 912533 - 913498 + | Transcriptional regulator/glucose kinase TERM 1432 913521 - 913503 - f 93 -9.6 -5.11613 | opp_overlap 913503 ATATGATGTAAAAAA CAGACGAA ACA CTCGTCTG TTTTTTTGTCGAAAA TERM 1433 913503 - 913521 + F 100 -8.9 -5.60993 | opp_overlap 913503 ATATGATGTAAAAAA CAGACGA AACAC TCGTCTG TTTTTTTGTCGAAAA Aflv_0896 913737 - 915626 + | Alkaline phosphatase superfamily protein TERM 1434 915656 - 915621 - f 70 -3.3 -4.96427 | opp_overlap 915627 915652, overlap 915627 CAACAAGAAAACAAA CGATAAGCTAGCTCT TACAAC AGAGCTAGCTTTTTT ACATACATATGTACA TERM 1435 915650 - 915627 - f 83 -11.1 -3.74652 | opp_overlap 915627, overlap 915621 GAAAACAAACGATAA GCTAGCTCT TACAAC AGAGCTAGC TTTTTTACATACATA TERM 1436 915627 - 915650 + F 93 -11.1 -5.09895 | opp_overlap 915627 915621 GAAAACAAACGATAA GCTAGCTCT TACAAC AGAGCTAGC TTTTTTACATACATA yqgT 915665 - 916579 + | Predicted carboxypeptidase TERM 1437 916602 - 916583 - T 88 -9.3 -4.65895 | opp_overlap 916583 GCCCGCACGTAAAAA GACGCCA CTATAT TGGCGTC TTTTTAATGGGCAAC TERM 1438 916583 - 916602 + T 89 -9.3 -4.72272 | opp_overlap 916583 GCCCGCACGTAAAAA GACGCCA CTATAT TGGCGTC TTTTTAATGGGCAAC Aflv_0898 916791 - 916606 - | Uncharacterized short membrane protein Aflv_0899 916924 - 917556 + | Zn-dependent hydrolase TERM 1439 917591 - 917566 - f 95 -6.1 -5.63103 | overlap 917567 917568 TTTTAAGCAAAAAAA TTCCCTTCTCT ATAC AGAGAAGGGGG TCTGGGGGATGTTTT TERM 1440 917590 - 917567 - f 86 -9.6 -3.96777 | overlap 917566 917568 TTTAAGCAAAAAAAT TCCCTTCTCT ATAC AGAGAAGGGG GTCTGGGGGATGTTT TERM 1441 917589 - 917568 - f 91 -13.1 -2.96982 | overlap 917567 917566 TTAAGCAAAAAAATT CCCTTCTCT ATAC AGAGAAGGG GGTCTGGGGGATGTT TERM 1442 918064 - 918049 - g 79 -6.8 -4.60487 | TACCATCGGCAAAAA CAAGCG GAAA CGCTCG CTCCGTTTATTGATT TERM 1443 918275 - 918261 - g 79 -8.6 -4.13767 | opp_overlap 918260 918271 TGTTCCACTTGAAAA TGAGCA AAT TGCTCA ATATATCGTTGAACG Aflv_0900 917671 - 918774 + | hypothetical protein TERM 1444 918779 - 918799 + T 95 -11.2 -5.06816 | opp_overlap 918779 TTTTTACATAAAAAA GCGATGAG GTACA CTCATCGC TTTTTATTCGCCCAT TERM 1445 918799 - 918779 - T 100 -11.2 -5.36441 | opp_overlap 918779 TTTTTACATAAAAAA GCGATGAG GTACA CTCATCGC TTTTTATTCGCCCAT Aflv_0901 919045 - 918803 - | Uncharacterized short membrane protein Aflv_0902 919813 - 919115 - | Transcriptional regulator, ArsR family TERM 1446 919347 - 919363 + g 91 -7.9 -4.87273 | opp_overlap 919346 919347 919348 919350, overlap 919348 AATGTCGGATAAAAT CCAGCGG CTT CCGCTGC TTTTTGTAAAATGTT TERM 1447 919362 - 919348 - G 79 -11.4 -2.53125 | opp_overlap 919347 919348, overlap 919347 919346 919350 ATGTCGGATAAAATC CAGCGG CTT CCGCTG CTTTTTGTAAAATGT TERM 1448 919348 - 919362 + g 89 -11.4 -3.51279 | opp_overlap 919348 919347 919346 919350, overlap 919347 ATGTCGGATAAAATC CAGCGG CTT CCGCTG CTTTTTGTAAAATGT TERM 1449 919976 - 919958 - H 79 -9 -3.9642 | AAATATTGAACTAAA GTTATACA ATA TGTATAAC CGAGATGAAGAGAGG Aflv_0903 920003 - 920374 + | Glutaredoxin family protein TERM 1450 920377 - 920397 + F 100 -8.3 -5.63857 | overlap 920379 CTATGTTTCGTAACG TCTTCACCC TAT GGGTGAATA TTTTTTTGAATTTTT TERM 1451 920379 - 920395 + F 91 -10.9 -4.41528 | overlap 920377 ATGTTTCGTAACGTC TTCACCC TAT GGGTGAA TATTTTTTTGAATTT comGA 920478 - 921554 + | Competence protein ComGA TERM 1452 921852 - 921889 + G 80 -4.9 -5.2197 | gap 1, opp_overlap 921864, overlap 921859 GCGAGCACATTACGT GGAGCAA-GTGAAGCGTA TGT TACGCTACCCGTTGTTTC TTTTTAGTTTTTGTA comGB 921538 - 922569 + | Competence protein ComGB comGC 922577 - 922879 + | Competence protein ComGC comGD 922872 - 923309 + | Competence protein ComGD comGE 923293 - 923601 + | Competence protein ComGE comGF 923598 - 924020 + | Competence protein ComGF TERM 1453 924065 - 924085 + GF 84 -3.9 -5.48825 | overlap 924067 TCTTTACCGTCATGT GCGCGCT ATTCATG AGCGCTC TTTTTTTGCATGCTG TERM 1454 924206 - 924174 - gf 70 -8.6 -3.38584 | overlap 924162 924179 AGATTACTTAATGAA GCAAACGCTTATTT ATGTG AAACAAACGCTTGC CAATACACCAGAAAA comGG 923986 - 924408 + | Competence protein ComGG aroK 924390 - 924929 + | Shikimate kinase Aflv_0912 924956 - 925144 + | hypothetical protein TERM 1455 925161 - 925142 - T 71 -6.5 -4.27316 | opp_overlap 925142 925145 TTGTTTAAGCGAAAA TAAGGCT CACGTT AGCCTTA TTTCGCTTGCAAATA Aflv_0913 925935 - 925159 - | hypothetical protein Aflv_0914 927559 - 925916 - | Superfamily II DNA/RNA helicase, SNF2 family TERM 1456 927912 - 927950 + H 100 -10.5 -5.60993 | gap 1, opp_overlap 927912 927911 927914 ACTTTCAGGTGAAAG GACAGA-GACTACCATAT GACA ATATGGGGGTCGTCTGTC TTTTTTTATGAACAA gcvT 927977 - 929071 + | Glycine cleavage system protein T (aminomethyltransferase) gcvPA 929089 - 930435 + | Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain TERM 1457 931253 - 931275 + G 81 -11.3 -2.7419 | gap 1, opp_overlap 931247 931245, overlap 931274 CATAAAACGTTTACC GGCCCACACG GTGG CG-GTGGGCC TGGTTCAGGTCCTGT gcvPB 930428 - 931882 + | Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain TERM 1458 931887 - 931918 + T 100 -10.9 -5.74086 | opp_overlap 931890, overlap 931890 ATCAAAAATAAAATA AAAGGTGCCAGGC GTGTTG GCTTGGCACCTTA TTTTTTCTTTACTTT TERM 1459 931890 - 931915 + T 100 -12.6 -4.88687 | opp_overlap 931890, overlap 931887 AAAAATAAAATAAAA GGTGCCAGGC GTGTTG GCTTGGCACC TTATTTTTTCTTTAC TERM 1460 931915 - 931890 - T 100 -10.4 -5.43329 | opp_overlap 931890 931887 AAAAATAAAATAAAA GGTGCCAGGC GTGTTG GCTTGGCACC TTATTTTTTCTTTAC Aflv_0918 932317 - 931916 - | Rhodanese-related sulfurtransferase TERM 1461 932850 - 932832 - g 100 -8.2 -5.35721 | ACAGAAGAAGAAAAA GCAGATTT AAA AAATCCGC GCTCGGCTGTTTGTT Aflv_0919 932415 - 933251 + | Lipoate-protein ligase A TERM 1462 933291 - 933335 + F 100 -6.7 -5.87996 | opp_overlap 933291 CGCTTGACTTAATTA TCAATATGTAGTATGTGGTTT TTA AAAAATCATACTATATATTGA TTTTTTTATTGATTA TERM 1463 934275 - 934287 + F 74 -9.1 -3.54414 | opp_overlap 934266 934274 934273, overlap 934273 AAAAATGCAAAATCC GCGCA TTT TGCGC TATTTGCTTGAAAAT TERM 1464 935305 - 935284 - f 95 -8.7 -5.50723 | gap 1, overlap 935288 TGAGGAAAATAAAAA GCAAGCGCTC GGG GAGCGCC-GC GTCGGTCTTGGCGTG TERM 1465 935302 - 935288 - f 90 -11.4 -4.02606 | overlap 935284 GAAAATAAAAAGCAA GCGCTC GGG GAGCGC CGCGTCGGTCTTGGC TERM 1466 935466 - 935456 - f 85 -5.4 -5.27335 | opp_overlap 935456 CTTGCGAAAGAAAAA GGAA GCT TTCC GTTTTTAGTTGGCGA TERM 1467 936238 - 936258 + F 84 -10.4 -3.87364 | opp_overlap 936238 TTTATAATGTAAAAA GGGACGGG AAAAA CCCGTTCC TTATCTTATTATGAC TERM 1468 936258 - 936238 - f 84 -8.2 -4.78149 | opp_overlap 936238 TTTATAATGTAAAAA GGGACGGG AAAAA CCCGTTCC TTATCTTATTATGAC splB 936338 - 937363 + | Spore photoproduct (thymine dimer) lyase mntR 937373 - 937861 + | Mn-dependent transcriptional regulator (DtxR family) TERM 1469 937850 - 937871 + GT 100 -6.6 -6.07374 | opp_overlap 937850 AAACAGAACGAGCAA GAACAGGC ATAAAC GCTTGTTC TTTTTTGTTTTTTAT Aflv_0924 937812 - 938813 + | Predicted esterase of the alpha-beta hydrolase superfamily TERM 1470 938824 - 938844 + T 95 -2.5 -6.11243 | opp_overlap 938816, overlap 938812 938812 ATTGAAAGAAAAAAA TCGGGTT AAAAAGA GGCCCGA TTTTTTTTCTTCCCT Aflv_0925 939191 - 938829 - | Uncharacterized short membrane protein Aflv_0926 940120 - 939191 - | Predicted metal-dependent enzyme Aflv_0927 940236 - 940799 + | Uncharacterized membrane protein TERM 1471 940832 - 940853 + F 71 -6.6 -4.09685 | AGCAAAGGGGGGAGA GGGGGAAT GGTTCG ATTCCTCC TTTTAAACGGTCCGA Aflv_0928 940838 - 941284 + | 3-dehydroquinate dehydratase II Aflv_0929 941287 - 942348 + | Xaa-Pro aminopeptidase efp 942367 - 942924 + | Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) TERM 1472 942955 - 942932 - f 74 -5.2 -4.66537 | opp_overlap 942932, overlap 942927 GTGCGTAATAGAAAA GGTGCTCC AGAAGTAA GGGGCACC TTTTTCGACAATTAT TERM 1473 942932 - 942955 + F 81 -7.4 -4.60255 | opp_overlap 942927 942932 GTGCGTAATAGAAAA GGTGCTCC AGAAGTAA GGGGCACC TTTTTCGACAATTAT TERM 1474 943064 - 943089 + F 93 -9.8 -5.0065 | opp_overlap 943066 AATTCAATGTCCATA CATCTCCTTG TGACGT CAAGGGGATG TTTTCTTTGTAACTA TERM 1475 944139 - 944153 + G 100 -6.4 -5.68023 | overlap 944141 ACACATTGCTTGCGG TTGTCG GTC CGACGA TTTTTTTCGTTGTCA Aflv_0931 943946 - 944275 + | Uncharacterized short membrane protein spoIIIAA 944272 - 945213 + | Stage III sporulation protein AA (mutants block sporulation after engulfment) spoIIIAB 945214 - 945726 + | Stage III sporulation protein AB (mutants block sporulation after engulfment) spoIIIAC 945742 - 945948 + | Stage III sporulation protein AC (mutants block sporulation after engulfment) spoIIIAD 945991 - 946356 + | Stage III sporulation protein AD (mutants block sporulation after engulfment) spoIIIAE 946361 - 947521 + | Stage III sporulation protein AE (mutants block sporulation after engulfment) spoIIIAF 947529 - 948107 + | Stage III sporulation protein AF (mutants block sporulation after engulfment) spoIIIAG 948114 - 948680 + | Stage III sporulation protein AG (mutants block sporulation after engulfment) TERM 1476 948715 - 948705 - g 74 -4 -5.04385 | opp_overlap 948705 CATATGTTGAAAAAA CAAA CGG TTTG GTTGTTAACAATGTT TERM 1477 948838 - 948828 - g 78 -5.4 -5.04356 | GCAAACAATGAAAAA GGTT TAA AACC GACGGATGAAGCCAT spoIIIAH 948693 - 949256 + | Stage III sporulation protein AH (mutants block sporulation after engulfment) TERM 1478 949254 - 949271 + F 100 -9.9 -5.53288 | opp_overlap 949254 GTTCGTTTTCAAAAA TAACCGG AAAT CCGGTTA TTTTTTTCGGTTGAA TERM 1479 949271 - 949254 - f 91 -9.9 -4.56597 | opp_overlap 949254 GTTCGTTTTCAAAAA TAACCGG AAAT CCGGTTA TTTTTTTCGGTTGAA TERM 1480 949561 - 949551 - g 82 -3.2 -5.48054 | ATTAAAATGAAAAAA GCTG GAG CAAC AGAACAAGTTGTCGT TERM 1481 949699 - 949689 - g 70 -5.4 -4.42235 | AAGCCGGAAAAACAA GTTG TTG CAAC AGAAAACTTACATAC accB 949446 - 949946 + | Biotin carboxyl carrier protein accC 949960 - 951312 + | Biotin carboxylase Aflv_0942 951334 - 951729 + | hypothetical protein TERM 1482 951768 - 951731 - f 95 -12.1 -4.20918 | opp_overlap 951737 951757, overlap 951734 951737 CGGAAGTCGAATAAA GAAGAGGGGCAATCTCA TTGA TGAGATCGCCCTTTTTC CATGGGTGAGTGTTT TERM 1483 951765 - 951734 - f 77 -8 -4.2204 | opp_overlap 951737 951757, overlap 951731 951737 AAGTCGAATAAAGAA GAGGGGCAATCTCA TTGA TGAGATCGCCCTTT TTCCATGGGTGAGTG TERM 1484 951762 - 951737 - f 93 -14.1 -2.81182 | opp_overlap 951737 951757, overlap 951734 951731 TCGAATAAAGAAGAG GGGCAATCTCA TTGA TGAGATCGCCC TTTTTCCATGGGTGA TERM 1485 951737 - 951762 + F 100 -11.9 -4.67353 | opp_overlap 951737 951734 951731, overlap 951757 TCGAATAAAGAAGAG GGGCAATCTCA TTGA TGAGATCGCCC TTTTTCCATGGGTGA nusB 951778 - 952236 + | Transcription termination factor folD 952260 - 953111 + | 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Aflv_0945 953126 - 954475 + | Exonuclease VII large subunit Aflv_0946 954472 - 954684 + | Exonuclease VII small subunit Aflv_0947 954687 - 955559 + | Geranylgeranyl pyrophosphate synthase TERM 1486 955607 - 955636 + F 86 -7.1 -5.08824 | opp_overlap 955606, overlap 955609 GTGGAAAAGAAATGT TAGCCGTTCACAC GTTC GTGTAAGCGGCTC TTTTTTGCGTACAAA TERM 1487 955609 - 955634 + F 89 -9.7 -4.17608 | opp_overlap 955606, overlap 955607 GGAAAAGAAATGTTA GCCGTTCACAC GTTC GTGTAAGCGGC TCTTTTTTGCGTACA dxs 955722 - 957623 + | Deoxyxylulose-5-phosphate synthase TERM 1488 957774 - 957753 - g 78 -8.7 -3.85817 | ATGCGGCTTGACAAA CCAGGGGAA AAAG TTCCCGTGG ACATTCCGCTAACGG TERM 1489 958226 - 958214 - g 71 -3.3 -5.00616 | opp_overlap 958224 GTTTGTCGGAAAAAA GGGGA TTG TCCGC GATGCACGTGTTCAT Aflv_0949 957627 - 958469 + | Predicted rRNA methylase TERM 1490 958460 - 958486 + F 91 -11.7 -3.93256 | opp_overlap 958458 AAATAAAGAACATGC GGGGGAATAAC GATCG GTTATTCCCTC TTGTTTGCCCGTCTA ahrC 958554 - 959012 + | Arginine repressor recN 959031 - 960761 + | ATPase involved in DNA repair TERM 1491 961291 - 961279 - g 79 -7.7 -4.38092 | overlap 961270 961276 GAACAAGGAAAACAA TCTCC CGG GGAGA AGGCTGGCATTCGAG spoIVB 960877 - 962154 + | Predicted membrane-associated Zn-dependent protease TERM 1492 962146 - 962165 + F 100 -8.6 -5.69262 | opp_overlap 962137 962146 CGAAATGAGCAAAAA GCGAGCTA ATAT TAGCTTGC TTTTTGTTTTTCTAC TERM 1493 962165 - 962146 - f 82 -6.4 -4.84363 | opp_overlap 962146, overlap 962137 CGAAATGAGCAAAAA GCGAGCTA ATAT TAGCTTGC TTTTTGTTTTTCTAC spo0A 962372 - 963151 + | Stage 0 sporulation regulator Spo0A (response regulator, REC-HTH domains) TERM 1494 963181 - 963158 - T 74 -3.8 -5.10461 | opp_overlap 963161, overlap 963161 GCGAGCTAATAAAAA TAAGGTAGTC GAGC GGCTACCTTT TTTGTTGTTCCTTTT TERM 1495 963161 - 963178 + T 100 -7.7 -5.66229 | opp_overlap 963158 963161 AGCTAATAAAAATAA GGTAGTC GAGC GGCTACC TTTTTTGTTGTTCCT TERM 1496 963178 - 963161 - T 73 -5.5 -4.64495 | opp_overlap 963161, overlap 963158 AGCTAATAAAAATAA GGTAGTC GAGC GGCTACC TTTTTTGTTGTTCCT Aflv_0954 963338 - 963174 - | hypothetical protein Aflv_0955 963376 - 964110 + | Glycerophosphoryl diester phosphodiesterase TERM 1497 964090 - 964123 + T 100 -10.5 -5.40474 | gap 1, opp_overlap 964094, overlap 964094 964118 CAAAACGTACGTGAA AAAACGCTTCGA-TCA CTC TGAATCGAAGCGTTTC TTTTTTTGGAAGCGT TERM 1498 964119 - 964094 - T 95 -11.3 -5.05782 | gap 1, opp_overlap 964090 964094 964118 ACGTACGTGAAAAAA CGCTTCGA-TCA CTC TGAATCGAAGCG TTTCTTTTTTTGGAA TERM 1499 964094 - 964119 + T 100 -11.3 -5.20328 | gap 1, opp_overlap 964094, overlap 964090 964118 ACGTACGTGAAAAAA CGCTTCGA-TCA CTC TGAATCGAAGCG TTTCTTTTTTTGGAA Aflv_0956 964356 - 964102 - | Uncharacterized short membrane protein TERM 1500 964465 - 964444 - H 71 -9.5 -2.87794 | overlap 964443 AATGTATGATGAAAG CGTCTGCAA AAAA TTGCAAACG AATAGGTGATAGGAA TERM 1501 965968 - 965948 - g 70 -2.6 -5.05606 | TGCAAGAAAAAGAAA TTGTGC GCGTCGGTG GCACAA AGCCGATTCCGATTA TERM 1502 966465 - 966481 + G 71 -6.6 -4.20025 | opp_overlap 966458 GAATAAAACGGCAGC TGCCAA ACAGC TTGGCA TTTCTATTCGAAATT Aflv_0957 964471 - 966546 + | Multidomain signal transduction protein, transcriptional regulator (PAS-PAS-AAA+-FIs domains) TERM 1503 966560 - 966536 - f 80 -2.1 -5.626 | overlap 966558 GACTTGATAAAAAAA GCATGCAATAA TAT TCATAGTATGC AAAAAGTTGCAATCA ptb 966675 - 967577 + | Phosphate butyryltransferase bcd 967594 - 968697 + | Leucine dehydrogenase TERM 1504 968735 - 968708 - f 70 -8.4 -3.32832 | opp_overlap 968712, overlap 968703 968701 968712 GCTAAAAATATGCAA TGAAGCGAGGAC GTAT GTTCTCGCTTCG TCGATGATAAAAAAT TERM 1505 968712 - 968731 + F 75 -10 -3.19463 | opp_overlap 968712 968708 968703 968701 AAAATATGCAATGAA GCGAGGAC GTAT GTTCTCGC TTCGTCGATGATAAA buk 968749 - 969864 + | Butyrate kinase lpdV 969874 - 971298 + | Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) bkdAA 971310 - 972302 + | Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) bkdAB 972305 - 973288 + | Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) TERM 1506 974076 - 974086 + G 75 -3.2 -5.24129 | AAGGGTTTAACTTAA CGTA TTT TGCG TTTTTTGTAAAAGCG bkdB 973301 - 974599 + | Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) TERM 1507 974593 - 974647 + F 87 -8.3 -4.56159 | gap 2, opp_overlap 974607 974610, overlap 974597 974607 974610 AGAAAATACACCGAT TTACTAACTAGTAAGAAGAGGGTAACG AGT TGTTATCCTCTTCTT-CTTGTTA-TGA TTTCTCTTTTCTTCC TERM 1508 974597 - 974644 + F 93 -13.8 -3.19413 | gap 1, opp_overlap 974607 974610, overlap 974593 974607 974610 AATACACCGATTTAC TAACTAGTAAGAAGAGGGTAACG AGT TGTTATCCTCTTCTT-CTTGTTA TGATTTCTCTTTTCT TERM 1509 974635 - 974607 - f 77 -10.4 -3.29096 | opp_overlap 974607 974597 974593 974610, overlap 974610 TTTACTAACTAGTAA GAAGAGGGTAAC GAGTT GTTATCCTCTTC TTCTTGTTATGATTT TERM 1510 974607 - 974635 + F 100 -13.3 -4.07515 | opp_overlap 974607 974610, overlap 974597 974593 974610 TTTACTAACTAGTAA GAAGAGGGTAACG AGT TGTTATCCTCTTC TTCTTGTTATGATTT TERM 1511 974610 - 974632 + F 83 -9.2 -4.13244 | opp_overlap 974607 974610, overlap 974607 974597 974593 ACTAACTAGTAAGAA GAGGGTAACG AGT TGTTATCCTC TTCTTCTTGTTATGA TERM 1512 976338 - 976326 - g 70 -5.5 -4.48299 | opp_overlap 976329, overlap 976327 976330 TCATATGGAAACAAA CGGAC AAC GTCCA ACGTTGCATCTTGTC TERM 1513 976587 - 976577 - g 91 -6.8 -5.58209 | opp_overlap 976576 TGAAAGTGAAAAAAA GCGA TAT TCGC ATATATGTGGCAGGT Aflv_0965 974755 - 976737 + | Methylmalonyl-CoA mutase TERM 1514 977241 - 977254 + G 71 -6.7 -4.21194 | TGAACGGAGCGGTAT TGCCA ATTA TGGCA TTTTACATCGTAACA TERM 1515 977642 - 977628 - g 78 -5.6 -4.81083 | opp_overlap 977628 TGGAAGTAGCAAAAA TGCGGG CAG CGCGCA TCATTTGGGCAAAAA Aflv_0966 976724 - 978913 + | Methylmalonyl-CoA mutase, contains C-terminal cobalamin-binding domain Aflv_0967 978910 - 980010 + | Protein kinase, ArgK family TERM 1516 980012 - 980030 + F 90 -8.8 -4.91084 | opp_overlap 980012, overlap 979990 ACGAGCAAACGTAAA GGTGTCCG TTA TGGGCACC TTTTATTGTTGAATA TERM 1517 980664 - 980647 - g 70 -7.7 -3.63627 | GGGCGATACGTTAAA GCAAGCA AAAG CGCTTGC GTTACAAAACATTGA TERM 1518 980945 - 980957 + G 70 -5.5 -4.4595 | CGCGAGGAATTTGAA GAGCG AGC TGCTC TTTTGCATTTTGTAA Aflv_0968 980066 - 981013 + | hypothetical protein Aflv_0969 981064 - 981567 + | Uncharacterized erfK/srfK family protein, probably secreted TERM 1519 981600 - 981565 - f 100 -19.2 -3.55761 | opp_overlap 981567 981570 981573, overlap 981570 981573 TACGGAGCGCTTAAA TAGAACAAGCTGGCCG AATA CGGTCAGCTTGTTCTA TATCCACATGCTTAA TERM 1520 981567 - 981598 + F 100 -19.6 -2.89039 | opp_overlap 981565 981570 981573, overlap 981570 981573 CGGAGCGCTTAAATA GAACAAGCTGGCCG AATA CGGTCAGCTTGTTC TATATCCACATGCTT TERM 1521 981595 - 981570 - f 100 -13.3 -3.81755 | opp_overlap 981567 981570 981573, overlap 981565 981573 AGCGCTTAAATAGAA CAAGCTGGCCG AATA CGGTCAGCTTG TTCTATATCCACATG TERM 1522 981570 - 981595 + F 100 -15.5 -3.59202 | opp_overlap 981570 981565 981573, overlap 981567 981573 AGCGCTTAAATAGAA CAAGCTGGCCG AATA CGGTCAGCTTG TTCTATATCCACATG TERM 1523 981592 - 981573 - f 83 -9.2 -4.03586 | opp_overlap 981570 981567 981573, overlap 981570 981565 GCTTAAATAGAACAA GCTGGCCG AATA CGGTCAGC TTGTTCTATATCCAC TERM 1524 981573 - 981592 + F 90 -11.4 -3.92996 | opp_overlap 981573 981570 981565, overlap 981570 981567 GCTTAAATAGAACAA GCTGGCCG AATA CGGTCAGC TTGTTCTATATCCAC Aflv_0970 981688 - 982248 + | Lactoylglutathione lyase TERM 1525 982674 - 982689 + G 71 -3.2 -5.07053 | overlap 982676 GGCGTATTGTCCCTC GATGGC TACG GCCATA TTTTTTACCGTAATT TERM 1526 983263 - 983287 + G 100 -9.4 -4.60889 | TAGATATTGACTCAT CGGATAAAGC AGCCC GCTTTATTCG TTTTTGCGACTCGTT Aflv_0971 982245 - 983795 + | Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) TERM 1527 983941 - 983890 - Tf 93 -14.1 -2.61873 | gap 2, opp_overlap 983895, overlap 983895 AGCATTTTTAAACAT GAAAAGGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCCTTTTT TTCATGTGCTCGGCA TERM 1528 983895 - 983936 + TF 100 -11.8 -5.59357 | gap 2, opp_overlap 983890 983895 TTTTAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTTTTTCATGTGCT TERM 1529 983936 - 983895 - Tf 100 -14 -4.49756 | gap 2, opp_overlap 983895, overlap 983890 TTTTAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTTTTTCATGTGCT Aflv_0972 985674 - 984154 - | Uncharacterized iron-regulated membrane protein Aflv_0973 985660 - 986784 + | Tripeptidase TERM 1530 986885 - 986868 - gf 73 -2.7 -5.08824 | TTTCCATCGAAAAAA TGAGC CATCCGAC GCTCA TCCCGAGCATGCCTT cheW 986750 - 987256 + | Chemotaxis signal transduction protein Aflv_0975 987278 - 987382 + | hypothetical protein TERM 1531 988286 - 988296 + G 73 -8.2 -3.64703 | overlap 988283 TTTCATTGAGGCCGT GCGC CGC GCGC TTTACATGAGCAAAA Aflv_0976 987360 - 988730 + | 6-phosphogluconate dehydrogenase TERM 1532 988793 - 988824 + T 100 -13.8 -4.44667 | opp_overlap 988796 CGTTCGCCTAATAGT TAATCCCCCTCACC ATGC GATGAGGGGGATTG TTTATTGTTCAAACA TERM 1533 988821 - 988796 - T 100 -15.5 -3.1855 | opp_overlap 988793 TCGCCTAATAGTTAA TCCCCCTCACC ATGC GATGAGGGGGA TTGTTTATTGTTCAA Aflv_0977 989437 - 988826 - | Predicted metal-dependent hydrolase TERM 1534 988996 - 989038 + g 86 -6.9 -4.9218 | gap 1, overlap 988997 GGTGTCCCGCTTGGT TGCGTTCGACGCCGAGGGCA TCAA TGCCGACGCCG-CGAATGCG TTTTTCTGCTAAGTA TERM 1535 988997 - 989037 + g 71 -8.2 -3.54585 | gap 1, overlap 988996 GTGTCCCGCTTGGTT GCGTTCGACGCCGAGGGCA TCAA TGCCGACGCCG-CGAATGC GTTTTTCTGCTAAGT zwf 990938 - 989451 - | Glucose-6-phosphate 1-dehydrogenase TERM 1536 990096 - 990131 + g 82 -3.3 -5.43553 | opp_overlap 990119 GAAATATGTTTCTAC GT-CATCGTGCGTCATC GGAC GAAG-CGCACGAAGCAC TTTTATTTTTTCGCT TERM 1537 990200 - 990216 + g 70 -5.1 -4.41548 | opp_overlap 990212 990214 TCGCCAAAAGGGCAA CCATTTG CAA CATATGG TTTTGTACCATATCG TERM 1538 991306 - 991320 + G 86 -5.6 -5.40464 | overlap 991308 GTCGTTCGTTCCAAG GTGGAG AGA CTCCTC TTTTTGTTTATGGTC TERM 1539 991308 - 991318 + G 74 -6.8 -4.31946 | overlap 991306 CGTTCGTTCCAAGGT GGAG AGA CTCC TCTTTTTGTTTATGG Aflv_0979 991059 - 991997 + | Metal-dependent hydrolase of the beta-lactamase superfamily III Aflv_0980 991994 - 992311 + | Zinc finger domain containing protein TERM 1540 992307 - 992361 + T 100 -14.8 -3.36991 | gap 3, opp_overlap 992314, overlap 992314 ATTATTATTTTGAAG TGTAAAAGGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCCTTTT-CA TGTTTAAAAATGCTG TERM 1541 992355 - 992314 - T 95 -11.8 -4.19238 | gap 2, opp_overlap 992307 992314 TTTTGAAGTGTAAAA GGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGTTTAAAA TERM 1542 992314 - 992355 + T 100 -14 -4.49756 | gap 2, opp_overlap 992314, overlap 992307 TTTTGAAGTGTAAAA GGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGTTTAAAA Aflv_0981 993443 - 992445 - | NADH:flavin oxidoreductase, Old Yellow Enzyme family TERM 1543 993100 - 993125 + g 72 -6.1 -4.2558 | GGAAGTGGTGATGGC GCGATGATTTC TCCG GCAACCATCGC TTTTCGTCCGGCATG proI 994337 - 993516 - | Pyrroline-5-carboxylate reductase TERM 1544 994369 - 994399 + H 91 -10.6 -4.42062 | gap 1, opp_overlap 994369 994390 CTCCAAAATAAAAAA GACCTTTC-GTCC GATAAA GGACGGAAAGGTC TTTATTTCCGCGGTA TERM 1545 994399 - 994369 - H 100 -10.6 -5.79595 | gap 1, opp_overlap 994369, overlap 994390 CTCCAAAATAAAAAA GACCTTTC-GTCC GATAAA GGACGGAAAGGTC TTTATTTCCGCGGTA Aflv_0983 994775 - 995722 + | Zn-dependent hydrolase TERM 1546 995860 - 995841 - g 89 -7.2 -5.07652 | gap 1, opp_overlap 995840 TCGTTCAAAAGAAAA GTTGGCGCA AAT TGCGC-AAC ATATTGAACAAACGT Aflv_0984 995719 - 996504 + | Short-chain dehydrogenase Aflv_0985 996516 - 996833 + | hypothetical protein TERM 1547 996845 - 996864 + T 75 -7.8 -4.0257 | opp_overlap 996845 CTAATAAAGTAAAAA GCCCGG AATAAAAG CCGGGC TTATTCGTTTTTCGG TERM 1548 996864 - 996845 - T 88 -7.8 -5.09521 | opp_overlap 996845 CTAATAAAGTAAAAA GCCCGG AATAAAAG CCGGGC TTATTCGTTTTTCGG Aflv_0986 997080 - 996865 - | Zinc finger domain containing protein (CDGSH-type) TERM 1549 996962 - 996972 + g 71 -4 -4.88405 | CCGCAACGACAGAGG GAAA ATG TTTC TTTTGTTTCAAACTT Aflv_0987 997218 - 997466 + | hypothetical protein TERM 1550 997465 - 997482 + T 71 -6.9 -4.02817 | overlap 997466 TTACAGATATTTTAT AGGGGGA CGAA TCCCCCC TTCTTATTGTGGAGA TERM 1551 997466 - 997481 + T 75 -10.4 -3.01208 | overlap 997465 TACAGATATTTTATA GGGGGA CGAA TCCCCC CTTCTTATTGTGGAG Aflv_0988 997605 - 997486 - | hypothetical protein Aflv_0989 997657 - 997857 + | hypothetical protein TERM 1552 997883 - 997849 - T 74 -6.5 -4.41548 | gap 1, opp_overlap 997861 997875 997876, overlap 997855 997858 TTAGATTGGAGAAAA TTCAAATAACCGAGGG TGTC CCCTCGGTTACC-GAT GATCGGTGAATATTG TERM 1553 997878 - 997855 - T 100 -15.4 -3.96705 | opp_overlap 997861 997875 997876, overlap 997849 997858 TGGAGAAAATTCAAA TAACCGAGGG TGTC CCCTCGGTTA CCGATGATCGGTGAA TERM 1554 997875 - 997858 - T 93 -12.7 -4.0921 | opp_overlap 997861, overlap 997855 997849 AGAAAATTCAAATAA CCGAGGG TGTC CCCTCGG TTACCGATGATCGGT Aflv_0990 998790 - 997876 - | Predicted oxidoreductase TERM 1555 998124 - 998134 + g 75 -2.4 -5.3689 | opp_overlap 998124 CATCGAATAAATAAT CGAC ATA GCCG TTTTGTTTTATTTCT TERM 1556 999211 - 999199 - g 95 -7.7 -5.05782 | opp_overlap 999198 999199 ATGTATGTGAAAAAA TGGAG CCG CTCCA CTCTTTTTACACATC nudF 998889 - 999428 + | NTP pyrophosphohydrolase TERM 1557 999446 - 999430 - f 80 -10.1 -3.71645 | opp_overlap 999430 AACTGCATATGTAAA GCGGTCA CTG CGACCGC TTTTTGTCATATCAC TERM 1558 999430 - 999446 + F 93 -9.4 -4.95155 | opp_overlap 999430 AACTGCATATGTAAA GCGGTC ACTGC GACCGC TTTTTGTCATATCAC spoIIM 999512 - 1000156 + | Stage II sporulation protein M, required for dissolution of the septal cell wall Aflv_0993 1000384 - 1001184 + | Transposase Aflv_0994 1001211 - 1001516 + | Transposase fur 1001525 - 1002106 + | Fe2+ uptake regulation protein TERM 1559 1002128 - 1002109 - f 71 -6.5 -4.26076 | opp_overlap 1002109 1002121 TGAGGGGCAGTAAAA CCTTTTC GTCTAT GAAAAGG TTTTTTCATTTATGT TERM 1560 1002109 - 1002128 + F 93 -7.2 -5.4387 | opp_overlap 1002109, overlap 1002121 TGAGGGGCAGTAAAA CCTTTTCG TCTA TGAAAAGG TTTTTTCATTTATGT Aflv_0996 1002203 - 1002415 + | hypothetical protein ripX 1002417 - 1003319 + | Site-specific recombinase XerD TERM 1561 1003320 - 1003341 + F 100 -9.5 -5.80364 | opp_overlap 1003320 CATCCACGAGCATAA CTGTGACGA TAAT TTGTCACAG TTTTTTTATTGCAAT drm 1003476 - 1004657 + | Phosphopentomutase punA 1004671 - 1005495 + | Purine nucleoside phosphorylase TERM 1562 1006388 - 1006369 - g 77 -6.4 -4.62783 | opp_overlap 1006380 TATTTAGCGGAAAAA GCATCTTC GCTT GAAGAAGC TCGTCATATGTTAGA Aflv_1000 1005514 - 1006815 + | Pyrimidine-nucleoside phosphorylase TERM 1563 1006816 - 1006838 + F 100 -12.1 -5.76633 | GATAAAATTTCGTAA CCTGAAGGA TTTAT TCCTTCAGG TTTTTTTATGTATAA TERM 1564 1007085 - 1007057 - g 78 -2.3 -5.52384 | TTTGTATGAAAAAAA TGCCCACGAGC CACTTCC GCCAGCGAGCA TGACGAAAATTATGA dacF 1006899 - 1008062 + | D-alanyl-D-alanine carboxypeptidase spoIIAA 1008157 - 1008513 + | Stage II sporulation protein AA (antagonist of anti-sigma factor, stand-alone STAS domain) spoIIAB 1008514 - 1008954 + | Stage II sporulation protein AB (anti-sigma factor, Ser/Thr protein kinase) sigF 1008962 - 1009705 + | Stage II sporulation protein AC, DNA-directed RNA polymerase sporulation-specific sigma factor (sigma-F) TERM 1565 1009722 - 1009683 - f 89 -9.4 -4.21351 | opp_overlap 1009688 AAATATTGCAACAAA TGAAAGCCCGAATGGA TGAATAAG TCCGTTCGGGCTTTTA TGCATATACATGACG TERM 1566 1009688 - 1009717 + F 95 -12.2 -4.45083 | opp_overlap 1009683 TTGCAACAAATGAAA GCCCGAATGGAT GAATAA GTCCGTTCGGGC TTTTATGCATATACA spoVAA 1009784 - 1010404 + | Stage V sporulation protein AA spoVAB 1010391 - 1010813 + | Stage V sporulation protein AB spoVAC 1010803 - 1011168 + | Stage V sporulation protein AC TERM 1567 1012178 - 1012141 - g 70 -5.6 -4.37871 | gap 2, overlap 1012131 TGAAACAAAATCAAA CGATTC--CGGCGATCGC TCAT GCGATTGCCGTTGAAGCG GTGACGTAAAGATGG spoVAD 1011177 - 1012187 + | Stage V sporulation protein AD spoVAE 1012190 - 1012510 + | Stage V sporulation protein AE-like protein spoVAE 1012507 - 1013109 + | Stage V sporulation protein AE spoVAF 1013048 - 1014535 + | Stage V sporulation protein AF TERM 1568 1014567 - 1014547 - g 73 -8.3 -3.69455 | opp_overlap 1014547 ATAAAAAGGTTGAAA CGTACCAAA ATT TATGGTACG TTTTCTTTAATTATT TERM 1569 1014547 - 1014567 + G 100 -8.3 -5.03713 | opp_overlap 1014547 ATAAAAAGGTTGAAA CGTACCAAA ATT TATGGTACG TTTTCTTTAATTATT lysA 1014541 - 1015923 + | Diaminopimelate decarboxylase TERM 1570 1015921 - 1015944 + TF 100 -11.1 -5.31275 | opp_overlap 1015921 ACGAAAGTAAAAAAA TAACCGAGG CGACAA CCTCGGTTA TTTTTTATGCTCCAA TERM 1571 1015944 - 1015921 - Tf 100 -11.8 -5.73563 | opp_overlap 1015921 ACGAAAGTAAAAAAA TAACCGAGGC GACA ACCTCGGTTA TTTTTTATGCTCCAA Aflv_1013 1016932 - 1015949 - | Predicted secreted protein ppiB 1016931 - 1017371 + | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family TERM 1572 1017458 - 1017480 + FH 74 -6.4 -4.35361 | GAGCAATGTATTGGC TGTTTATTGC AAA GTAATAGACA TTTCGTTTTATTGTG TERM 1573 1017741 - 1017762 + FH 100 -10.2 -5.32599 | TTTACATACATCTTG CCCTAGGA CGTCGT TCCTAGGG TTTTTATCTTTTATA ribD 1017795 - 1018871 + | Riboflavin-specific pyrimidine reductase/deaminase ribE 1018868 - 1019515 + | Riboflavin synthase alpha chain ribA 1019512 - 1020714 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase and GTP cyclohydrolase II ribH 1020727 - 1021191 + | Riboflavin synthase beta-chain ribT 1021274 - 1021618 + | Riboflavin biosynthesis protein ribT, acetyltransferase GNAT-family TERM 1574 1021638 - 1021617 - T 73 -10.2 -2.82471 | opp_overlap 1021617, overlap 1021616 1021619 ATAAATGCGAACAAT GACAGGGA TCAACG TCCCTGTC TTTTTTGCTTTTGTC TERM 1575 1021617 - 1021638 + T 100 -10.9 -5.50313 | opp_overlap 1021617 1021616 1021619 ATAAATGCGAACAAT GACAGGGAT CAAC GTCCCTGTC TTTTTTGCTTTTGTC Aflv_1020 1022152 - 1021625 - | Metal-dependent hydrolase, possible protease TERM 1576 1022715 - 1022695 - gH 71 -4 -4.76171 | GAAAAAATTACAAAA GCCACTTC ATACG AAAGTAGC ACGTCAAGAAATTCC Aflv_1021 1022153 - 1022941 + | Segregation and condensation protein A Aflv_1022 1022877 - 1023515 + | Segregation and condensation protein B Aflv_1023 1023533 - 1023805 + | Predicted membrane protein TERM 1577 1023807 - 1023826 + F 100 -7.1 -5.93252 | opp_overlap 1023807 TGCCTGGAAAGTAAG CAGGTGC CTTTGT GCGCCTG TTTTTTCTTTTTGAG TERM 1578 1023829 - 1023848 + F 76 -4.4 -5.17576 | overlap 1023827 CTTTGTGCGCCTGTT TTTTCTTT TTGA GAAGAAAA TTTTTTAGATTGCTG TERM 1579 1023994 - 1023940 - f 88 -7.7 -5.03409 | gap 1, opp_overlap 1023944 1023947 1023950 1023963, overlap 1023944 1023950 TGACAAAAAAAAGAA TCA-ATAGTAACATTATTACGTAATT ACGT AATTACGTAATAATGTAATTATGTAA TTGTGAGGAGGATAA TERM 1580 1023944 - 1023989 + F 95 -14.5 -2.96274 | opp_overlap 1023940 1023944 1023950, overlap 1023947 1023950 1023963 AAAAAAAAGAATCAA TAGTAACATTATTACGTAATT ACGT AATTACGTAATAATGTAATTA TGTAATTGTGAGGAG TERM 1581 1023989 - 1023944 - f 93 -12.3 -3.85437 | opp_overlap 1023944 1023947 1023950 1023963, overlap 1023940 1023950 AAAAAAAAGAATCAA TAGTAACATTATTACGTAATT ACGT AATTACGTAATAATGTAATTA TGTAATTGTGAGGAG TERM 1582 1023947 - 1023986 + F 95 -14 -3.62644 | opp_overlap 1023944 1023940 1023950, overlap 1023944 1023950 1023963 AAAAAGAATCAATAG TAACATTATTACGTAATT ACGT AATTACGTAATAATGTAA TTATGTAATTGTGAG TERM 1583 1023983 - 1023950 - f 100 -15.7 -3.4382 | opp_overlap 1023947 1023944 1023950 1023963, overlap 1023944 1023940 AAGAATCAATAGTAA CATTATTACGTAATT ACGT AATTACGTAATAATG TAATTATGTAATTGT TERM 1584 1023950 - 1023983 + F 100 -15.7 -2.9248 | opp_overlap 1023950 1023944 1023940, overlap 1023947 1023944 1023963 AAGAATCAATAGTAA CATTATTACGTAATT ACGT AATTACGTAATAATG TAATTATGTAATTGT TERM 1585 1023963 - 1023994 + F 72 -9 -3.29144 | opp_overlap 1023950 1023944 1023940, overlap 1023950 1023947 1023944 AACATTATTACGTAA TTACGTAATTACGT AATA ATGTAATTATGTAA TTGTGAGGAGGATAA Aflv_1024 1024013 - 1025074 + | Threonine aldolase Aflv_1025 1025064 - 1026266 + | Permease of the major facilitator superfamily TERM 1586 1026750 - 1026777 + G 78 -9.2 -3.60006 | opp_overlap 1026749, overlap 1026751 1026762 ATAGTGGAAGTAATG GCGTGACGATTT GTCA AAATCGTCGCGA TTTAGAACTGTCCTT TERM 1587 1026751 - 1026776 + G 89 -12.7 -2.75521 | opp_overlap 1026749, overlap 1026750 1026762 TAGTGGAAGTAATGG CGTGACGATTT GTCA AAATCGTCGCG ATTTAGAACTGTCCT Aflv_1026 1026263 - 1027492 + | Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Aflv_1027 1027479 - 1028681 + | Predicted carboxylase (ATP-grasp) TERM 1588 1028842 - 1028820 - g 71 -4.8 -4.59773 | TTTCATCGGGAAAAA TGGGGGATGA GAC TCATTTCCCA GTTGCGCGTTTTGAG Aflv_1028 1028693 - 1029814 + | Transcriptional regulator containing HTH domain, ArsR family TERM 1589 1029931 - 1029977 + F 100 -12.7 -4.56802 | gap 1, opp_overlap 1029940, overlap 1029935 1029940 CGCCTGTTCAGACTG TTG-ACAAAATGGTTGTAAGAC AGTT GTTTTACAACCATTTTGTTCCA TTTTGATATTTGTTT TERM 1590 1029935 - 1029972 + F 100 -18.1 -3.41195 | opp_overlap 1029940, overlap 1029931 1029940 TGTTCAGACTGTTGA CAAAATGGTTGTAAGAC AGTT GTTTTACAACCATTTTG TTCCATTTTGATATT TERM 1591 1029940 - 1029967 + F 100 -12.2 -4.77719 | opp_overlap 1029940, overlap 1029935 1029931 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTTTTACAACCA TTTTGTTCCATTTTG TERM 1592 1029967 - 1029940 - f 90 -10 -4.38154 | opp_overlap 1029940 1029935 1029931 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTTTTACAACCA TTTTGTTCCATTTTG TERM 1593 1030468 - 1030486 + F 81 -7.5 -4.57837 | opp_overlap 1030458 GCAAATTCAGATTTC CGAAAGA ACCCA TCTTTCG TTTTTGGACGAGTGT TERM 1594 1031458 - 1031432 - f 100 -19.6 -4.39568 | opp_overlap 1031428 1031427 ACCTATATATTAAAA CAGCTTGTCGAC TTT GTCGACAAGCTG ACAGGTGCTTTTATG TERM 1595 1031460 - 1031479 + F 100 -7.1 -5.98675 | overlap 1031428 1031427 TTGTCGACAAGCTGA CAGGTGC TTTTAT GCGCCTG TTTTTTCTTTTTATA Aflv_1029 1031577 - 1031996 + | hypothetical protein Aflv_1030 1032003 - 1032497 + | hypothetical protein TERM 1596 1032498 - 1032518 + F 100 -6.9 -5.8187 | opp_overlap 1032498 1032501 ATTCAATCGCAATAA GAAGCTG CGTGTGT CAGCTTC TTTTTTTGTTGCATA sodF 1032508 - 1033332 + | Superoxide dismutase TERM 1597 1033318 - 1033337 + F 71 -4.2 -4.9218 | opp_overlap 1033313 1033320 TTCATCAAAGCAAAA GGCCGC GTCATGTA GCGGTC TTTTTGTCATACATC TERM 1598 1033785 - 1033795 + G 87 -5.4 -5.52384 | TGTTGGCGGTAGCGT CGAA GGC TTCG TTTTTTTAATGAACA dacB 1033477 - 1034514 + | D-alanyl-D-alanine carboxypeptidase TERM 1599 1034683 - 1034696 + G 81 -5.3 -5.23943 | opp_overlap 1034676 AATGAAAATCGCCGA GCAAT CTGG ATTGC TTTCTTTTTTTGCTC spmA 1034507 - 1035100 + | Spore maturation protein A spmB 1035100 - 1035633 + | Spore maturation protein B TERM 1600 1035628 - 1035657 + F 76 -6.6 -4.42748 | gap 1, opp_overlap 1035635, overlap 1035635 TTATGGATGTTTGGG GAATAAAGCGGTC TTTAT GATCGCTTT-TTC TTATTTTTGAACTCC TERM 1601 1035635 - 1035651 + F 89 -5.8 -5.51353 | opp_overlap 1035635, overlap 1035628 TGTTTGGGGAATAAA GCGGTC TTTAT GATCGC TTTTTCTTATTTTTG rluB 1035683 - 1036450 + | Pseudouridine synthase TERM 1602 1036706 - 1036733 + G 80 -2.6 -5.51165 | opp_overlap 1036709 1036712, overlap 1036709 AACGGCAACAAAATT CAACTATCCGAC TACC GTGGGAAAGGTG TTTTTTTAAACTTTT resA 1036538 - 1037065 + | Thiol-disulfide oxidoreductase resA (cytochrome c biogenesis) TERM 1603 1038068 - 1038036 - g 86 -2.8 -5.86609 | gap 1, overlap 1038038 TTAAAAAAATAAAAA GCTTT-TCGATTCGT GTCA ACGAACCGTTAAAAC ATGATCATTACGCAT TERM 1604 1038164 - 1038146 - g 73 -7.5 -4.12532 | overlap 1038158 CGTTTGACAGATAAA CAAACGA ACAAA TCGTTTG GCACGATTACGATTG resB 1037078 - 1038694 + | ResB protein required for cytochrome c biosynthesis TERM 1605 1039003 - 1038992 - g 73 -5.8 -4.42653 | opp_overlap 1038991 1038987 ATTTTATTTATAAAA CGAG TTTA CTCG GTTTATTCACTTTGC resC 1038706 - 1039881 + | ABC-type transport system involved in cytochrome c biogenesis, permease component TERM 1606 1039884 - 1039904 + F 81 -6.8 -4.77165 | opp_overlap 1039885, overlap 1039885 TGCGGGATCTTAAAA ACGCCTTC ATTGC GAAGGCGC TTTTCTTATGAGAAG TERM 1607 1039903 - 1039885 - f 91 -11 -4.62069 | opp_overlap 1039884 1039885 GCGGGATCTTAAAAA CGCCTTCA TTG CGAAGGCG CTTTTCTTATGAGAA TERM 1608 1039885 - 1039903 + F 79 -10.3 -3.45817 | opp_overlap 1039885, overlap 1039884 GCGGGATCTTAAAAA CGCCTTC ATTGC GAAGGCG CTTTTCTTATGAGAA resD 1039954 - 1040688 + | Transcriptional regulator of redox response ResD (REC-wHTH) resE 1040685 - 1042448 + | Redox sensor histidine kinase ResE TERM 1609 1042511 - 1042501 - f 71 -4 -4.85433 | opp_overlap 1042501 ATAGAAACGTAAAAA TTGT TCG ACAA TTACATATGTCCGTT TERM 1610 1042769 - 1042790 + F 100 -10.9 -5.55769 | overlap 1042759 CTTTTGTTGTTTCCA GCTCATTCC ATTT GGAGTGAGC TTTTTTGTTATAAAG Aflv_1041 1042913 - 1043869 + | ABC-type cobalamin/Fe3+-siderophore transport system, periplasmic component TERM 1611 1043913 - 1043942 + GF 100 -10.2 -4.87592 | gap 1 GTTGCACTATTATTA GGGATATCGATTG GATCA CAATCGAT-TCCC TTTTCTTCTATATGG Aflv_1042 1043835 - 1044881 + | ABC-type cobalamin/Fe3+-siderophore transport system, permease component TERM 1612 1045326 - 1045354 + G 100 -14.6 -3.97307 | AGCGAGCAGCGCTTG CACGCGCGCTTG CGCAA CAACCGCGCGTG TTGTTGTTAGATGAA Aflv_1043 1044878 - 1046329 + | ABC-type cobalamin/Fe3+-siderophore transport system ATPase fused to adenosylcobinamide amidohydrolase Aflv_1044 1046326 - 1047258 + | Cobalamin biosynthesis protein CobD/CbiB cobD 1047233 - 1048282 + | L-threonine-O-3-phosphate decarboxylase CobD cobU 1048270 - 1048836 + | Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase, CobU cobS 1048809 - 1049558 + | Cobalamin-5-phosphate synthase, CobS cobC 1049516 - 1050112 + | Alpha-ribazole phosphatase Aflv_1049 1050292 - 1050492 + | CobU related cobalamine biosynthesis protein Aflv_1050 1050495 - 1051091 + | ATP-binding cobalamin adenosyltransferase Aflv_1051 1051088 - 1051558 + | Uncharacterized membrane protein TERM 1613 1051733 - 1051747 + G 70 -5.8 -4.36914 | opp_overlap 1051733 1051732, overlap 1051726 GGCAACACCAAAAGC TTTTGT TTT ACAAAA TTTTGTGAACGACGA Aflv_1052 1051551 - 1052252 + | ATP-binding domain of ThiL/HypE-like (N-terminal domain) family Aflv_1053 1052242 - 1052496 + | hypothetical protein hisJ 1052477 - 1053289 + | Histidinol phosphate phosphatase serA 1054892 - 1053243 - | Phosphoglycerate dehydrogenase TERM 1614 1053290 - 1053321 + g 100 -14.6 -2.72761 | opp_overlap 1053295, overlap 1053295 GTTCCACTTGGATAA AAAAAGGTTCAGCC GCGC GGCTGAACCTTTTA TACTCTAATCTTTTG TERM 1615 1053295 - 1053316 + g 100 -14.5 -4.52047 | opp_overlap 1053295, overlap 1053290 ACTTGGATAAAAAAA GGTTCAGCC GCGC GGCTGAACC TTTTATACTCTAATC TERM 1616 1053316 - 1053295 - G 100 -14.5 -5.61596 | opp_overlap 1053290 1053295 ACTTGGATAAAAAAA GGTTCAGCC GCGC GGCTGAACC TTTTATACTCTAATC TERM 1617 1053450 - 1053462 + g 74 -7.7 -3.97042 | overlap 1053447 TTGGCGACCAACTTG CATCG TTG CGATG TTTACTTGATGGTCA TERM 1618 1055048 - 1055032 - R 100 -10.1 -5.41787 | GAAAAAAGACAAAAA GCTGGCC AAA AGCCAGC TTAACGCATGAAGTG Aflv_1056 1055564 - 1055067 - | Inorganic pyrophosphatase TERM 1619 1055175 - 1055194 + g 70 -3.5 -4.84353 | opp_overlap 1055176 1055184, overlap 1055176 1055179 1055184 TTCTAGATCTTTATA ACGCTCA AAGAAA TGAGCGA TTTCTTTTAATTTAT TERM 1620 1055639 - 1055678 + r 70 -2.8 -5.11112 | opp_overlap 1055646, overlap 1055641 1055646 ACAATGACTGAACGA AAGAAAAGGGCAAGCTTC GCAC GAAGTTTGCCCTTAGATG TTTTTATTCAAATTT TERM 1621 1055671 - 1055646 - R 100 -11.9 -4.99947 | opp_overlap 1055641 1055639 1055646 CTGAACGAAAGAAAA GGGCAAGCTTC GCAC GAAGTTTGCCC TTAGATGTTTTTATT TERM 1622 1055646 - 1055671 + r 100 -14.1 -3.35342 | opp_overlap 1055646, overlap 1055641 1055639 CTGAACGAAAGAAAA GGGCAAGCTTC GCAC GAAGTTTGCCC TTAGATGTTTTTATT fer 1055930 - 1055682 - | Ferredoxin TERM 1623 1056816 - 1056805 - gH 81 -4.4 -5.2853 | opp_overlap 1056805 GACGGAAAAAGAAAA GGAA AAAT TTCC GCTTCTTTTTTCACT Aflv_1058 1056131 - 1057153 + | hypothetical protein TERM 1624 1058247 - 1058262 + GF 74 -4.7 -4.90381 | opp_overlap 1058247, overlap 1058242 GAAATGGGGTTAACA GACGT GCAACA ACGTC TTTTATTGTATTGGC recQ 1057107 - 1058591 + | Superfamily II DNA helicase Aflv_1060 1058584 - 1059174 + | Predicted metal-dependent membrane protease, CAAX family Aflv_1061 1059167 - 1059688 + | LysM repeat protein TERM 1625 1059943 - 1059923 - g 75 -10.5 -2.75844 | opp_overlap 1059922 1059923, overlap 1059922 1059925 GTTGTTATTCCAAAT CATTCGTCC ACA GAACGAATG GTTGTAGCAGCGATT Aflv_1062 1059743 - 1060189 + | Uncharacterized membrane protein Aflv_1063 1060211 - 1060609 + | Uncharacterized membrane protein Aflv_1064 1060584 - 1061372 + | Calcineurin-like phosphohydrolase TERM 1626 1061651 - 1061635 - g 81 -9.5 -3.85698 | opp_overlap 1061633 TGGCTCGTTGATAAA GTGAATC AAG GATTCAC GATTAGTCAAGCTAT Aflv_1065 1061455 - 1062375 + | Transcriptional regulator containing HTH domain MerR family and cobalamin binding domain TERM 1627 1062417 - 1062388 - f 75 -10.2 -3.23984 | opp_overlap 1062390, overlap 1062377 TAAACTCATTAGTAA TATGACGAACAT TTTTAC ACGTTCGTCATA TGCTAACAGTAAAGT Aflv_1066 1062451 - 1063044 + | Negative regulator of genetic competence, sporulation and motility TERM 1628 1063042 - 1063066 + T 100 -13 -5.05782 | opp_overlap 1063042 TACTTTGTAAAAAAA TAACCTTCGC TTATT GCGAAGGTTA TTTTTTAAAATGGGT TERM 1629 1063066 - 1063042 - T 100 -13 -5.41143 | opp_overlap 1063042 TACTTTGTAAAAAAA TAACCTTCGC TTATT GCGAAGGTTA TTTTTTAAAATGGGT Aflv_1067 1063787 - 1063071 - | N-acetylglucosaminylphosphatidylinositol de-N-acetylase related enzyme, LmbE family TERM 1630 1063200 - 1063223 + g 100 -8.2 -5.71638 | gap 1 TAAATGTTGTGTACG GTGCG-CAAGT AGA GCTTGACGCAC TTTTTTTGCTTCTTC TERM 1631 1063880 - 1063857 - H 87 -6 -5.30199 | AAAAATCAATAAAAA CTTCTTTGCA TATG CGCATAGAAG GTGTATACTATGACA TERM 1632 1064922 - 1064890 - gH 70 -5.5 -4.38313 | overlap 1064891 ACATTAAAGCGAAAA TCGTCGTCGAAGC TGCAAAC GGTCCGACGACGT TAGAAGCGACAGAAA TERM 1633 1064921 - 1064891 - gH 70 -9 -3.21904 | overlap 1064890 CATTAAAGCGAAAAT CGTCGTCGAAGC TGCAAAC GGTCCGACGACG TTAGAAGCGACAGAA gudB 1063926 - 1065206 + | Glutamate dehydrogenase TERM 1634 1065228 - 1065252 + GF 100 -14.5 -5.27477 | opp_overlap 1065228 CATGAATACAAAAAA TCTCCTATCAT TGT ATGATAGGAGA TTTTTTAATTGGAGT TERM 1635 1065252 - 1065228 - gf 100 -14.5 -5.49569 | opp_overlap 1065228 CATGAATACAAAAAA TCTCCTATCAT TGT ATGATAGGAGA TTTTTTAATTGGAGT Aflv_1069 1065160 - 1066257 + | Thioredoxin reductase TERM 1636 1066246 - 1066268 + F 100 -10.6 -6.04419 | opp_overlap 1066246 1066248 AAAAGAGAGAAGAAA GTGTCCGAAT AAA ATTCGGGCGC TTTTTTTATTGTTTT TERM 1637 1066268 - 1066246 - f 77 -6.2 -4.5002 | opp_overlap 1066246, overlap 1066248 AAAAGAGAGAAGAAA GTGTCCGAAT AAA ATTCGGGCGC TTTTTTTATTGTTTT bioD 1066339 - 1067007 + | Dethiobiotin synthetase TERM 1638 1067431 - 1067415 - g 71 -2.3 -5.24003 | opp_overlap 1067415 AATAAAAAGCAAAAA TTTGTTA CTT TAGCAAA TGGTTATCACGGAGA TERM 1639 1067799 - 1067787 - g 74 -6.3 -4.4261 | GGCCGAACAGGAAAA CGATT TGC AATCG AGCATGAAGATGTGC TERM 1640 1068055 - 1068042 - g 75 -2.3 -5.33331 | CAAATACAACAAAAA GCCAC ATTT GTCGC TGAACAGCTTGCATC TERM 1641 1068239 - 1068249 + G 75 -5.4 -4.83169 | opp_overlap 1068228, overlap 1068227 AACACGCCCGCTCGG CGAT GTG ATCG TTTTTATGCCACCGT bioA 1066983 - 1068347 + | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 1642 1068358 - 1068340 - T 100 -11 -5.57729 | opp_overlap 1068340 AAACAACAGAAAAAA GGGGCTAA TTG TCAGCCCC TTATATTTCACCGTA TERM 1643 1068340 - 1068358 + T 77 -8.8 -3.82202 | opp_overlap 1068340 AAACAACAGAAAAAA GGGGCTAA TTG TCAGCCCC TTATATTTCACCGTA ypeB 1069705 - 1068359 - | Sporulation protein YpeB TERM 1644 1069272 - 1069291 + g 78 -2.2 -5.42131 | gap 1, overlap 1069274 1069275 TGGACGTTTCGTAAC TCTTGTTGA ATA TCAGCA-GA TTTTTTGTATAGTTG sleB 1070635 - 1069718 - | Germination-specific spore cortex-lytic enzyme TERM 1645 1070558 - 1070544 - G 70 -2.8 -4.95618 | AAGATGAAAAACAAA CATATG AAC CATTTG CGCATTGTGACTCCT TERM 1646 1070612 - 1070624 + g 71 -4.1 -4.87665 | overlap 1070613 TTTGACGCTATTTTT TGTCA CAA TGACG TTTTTATACATAACA TERM 1647 1070654 - 1070672 + r 77 -10.2 -3.30474 | opp_overlap 1070654 AAAACATAATAAAAA GCCAAGCG TTA CGCCTGGC TTGATGATTGTGGGA TERM 1648 1070672 - 1070654 - R 100 -12.4 -5.35365 | opp_overlap 1070654 AAAACATAATAAAAA GCCAAGCG TTA CGCCTGGC TTGATGATTGTGGGA Aflv_1074 1071336 - 1070662 - | Membrane proteinase PrsW, regulator of anti-sigma factor RsiW Aflv_1075 1071414 - 1072133 + | Predicted glycosyltransferase Aflv_1076 1072166 - 1072366 + | Uncharacterized conserved protein, probably sectered TERM 1649 1072404 - 1072389 - f 83 -9 -4.00486 | opp_overlap 1072389 GGTACAATATAAGAA GCAGGA GCGT TCCTGC TTTTTTGTTGAAAAC TERM 1650 1072389 - 1072404 + F 95 -9 -5.4505 | opp_overlap 1072389 GGTACAATATAAGAA GCAGGA GCGT TCCTGC TTTTTTGTTGAAAAC cmk 1072442 - 1073119 + | Cytidylate kinase Aflv_1078 1073089 - 1073700 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 1651 1073794 - 1073769 - f 72 -8.3 -3.53012 | opp_overlap 1073762 1073760 1073758 TTTCTTTGTGTCAAA TGGACGAGCAA ATTG TTGTTCGCCCA TTGAACATATATTTC TERM 1652 1074348 - 1074325 - g 78 -2.3 -5.42259 | opp_overlap 1074314, overlap 1074326 TGACCGCGAAAAAAA TCGCGTTGT CTTATC ACATCGCGC GGTTGTAGAAGAAGA Aflv_1079 1073825 - 1074985 + | Ribosomal protein S1 TERM 1653 1075170 - 1075144 - g 100 -10.9 -5.27938 | opp_overlap 1075144 ATTTGCAAACAAAAA TCGGCGAACTT TCTTT ACGTTCGCCGA TTTTTATTAATGCGA TERM 1654 1075144 - 1075170 + G 100 -10.9 -5.1356 | opp_overlap 1075144 ATTTGCAAACAAAAA TCGGCGAACTT TCTTT ACGTTCGCCGA TTTTTATTAATGCGA Aflv_1080 1074987 - 1076051 + | Isopentenyl diphosphate isomerase TERM 1655 1076052 - 1076086 + T 82 -10.8 -3.5361 | opp_overlap 1076057, overlap 1076057 AGCCAGCGCCCATGA AAAAAGGTGTCCCG AAAAAAG CGGGGCACCTTTTG TTGTGTAGATCGTTA TERM 1656 1076057 - 1076081 + T 93 -10.7 -4.84914 | opp_overlap 1076057, overlap 1076052 GCGCCCATGAAAAAA GGTGTCCCG AAAAAAG CGGGGCACC TTTTGTTGTGTAGAT TERM 1657 1076081 - 1076057 - T 90 -8.5 -5.14563 | opp_overlap 1076052 1076057 GCGCCCATGAAAAAA GGTGTCCCG AAAAAAG CGGGGCACC TTTTGTTGTGTAGAT Aflv_1081 1076236 - 1076099 - | hypothetical protein TERM 1658 1076673 - 1076689 + G 73 -7.3 -4.08221 | overlap 1076684 TCGTTTGCGTTATAT CGGTCAT TTT ATGATCG TTTACTTGTGTTAAC Aflv_1082 1076283 - 1076903 + | Uncharacterized membrane protein TERM 1659 1076984 - 1076971 - g 72 -8.1 -3.78022 | TCTATATTTATTAAA GACGG ACTA CCGTC AATATCCAACATATT TERM 1660 1077749 - 1077739 - g 74 -6.8 -4.40358 | ACCGACGTTAGAAAA TGCG ATT CGCA TGCCGACGAAGTCTG seaA 1076900 - 1077796 + | Sporulation protein involved in spore envelope assembly Aflv_1084 1077793 - 1077975 + | hypothetical protein TERM 1661 1078001 - 1078019 + F 81 -6.6 -4.81306 | opp_overlap 1078001, overlap 1078003 AAAATGGGAAAGCTA GCCCCTTC AGT GGAAGGGC TTCTTTTTTGTTCGG TERM 1662 1078003 - 1078018 + F 74 -9 -3.47157 | opp_overlap 1078001, overlap 1078001 AATGGGAAAGCTAGC CCCTTC AGTG GAAGGG CTTCTTTTTTGTTCG TERM 1663 1078472 - 1078495 + G 88 -11 -3.85698 | ATGACTTTTATACGC TCGGATTCGG AGAG CCGATTCCGA TTTCTGGCACGCACG Aflv_1085 1078027 - 1079376 + | Predicted GTPase gpsA 1079388 - 1080407 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 1664 1080512 - 1080543 + F 100 -9.6 -5.36441 | gap 1, overlap 1080513 CATGTTTAGTCATCG TCTGAAGTAAAGACG CCC CG-CTTTACTTCAGC TTTTTTATGTGACGA TERM 1665 1080513 - 1080542 + F 100 -13.1 -3.81141 | gap 1, overlap 1080512 ATGTTTAGTCATCGT CTGAAGTAAAGACG CCC CG-CTTTACTTCAG CTTTTTTATGTGACG Aflv_1087 1080586 - 1080789 + | hypothetical protein Aflv_1088 1080805 - 1081527 + | Uncharacterized conserved secretedprotein TERM 1666 1081535 - 1081569 + F 100 -9.5 -5.55664 | opp_overlap 1081532 TGAAATAAGTCATGA TCCCTTCTCTAAG CAAATACAT TTTAGAGAAGGGA TTTTTTTAGTCATAA spoIVA 1081604 - 1083130 + | Stage IV sporulation protein A TERM 1667 1083134 - 1083149 + F 93 -6.8 -5.37593 | opp_overlap 1083134 ATCATTTTATAAAAA GACTCC GTTT GGGGTC TTTTTTGCTTTGAAA TERM 1668 1083149 - 1083134 - f 74 -4.6 -4.86001 | opp_overlap 1083134 ATCATTTTATAAAAA GACTCC GTTT GGGGTC TTTTTTGCTTTGAAA hbs 1083357 - 1083662 + | DNA-binding protein HU-alpha (histone-like protein) TERM 1669 1083679 - 1083709 + F 89 -6.9 -5.32608 | gap 1, opp_overlap 1083682, overlap 1083682 AAATTACATACAGCC AAAGAGGTAGC-CG GTTG CGAGCTGCCTCTTC TTTTTTGCCTTTTTT TERM 1670 1083682 - 1083706 + F 88 -8.6 -4.68528 | gap 1, opp_overlap 1083682, overlap 1083679 TTACATACAGCCAAA GAGGTAGC-CG GTTG CGAGCTGCCTC TTCTTTTTTGCCTTT mtrA 1083734 - 1084336 + | GTP cyclohydrolase I mtrB 1084347 - 1084574 + | Tryptophan operon RNA-binding attenuation protein (TRAP) Aflv_1093 1084635 - 1085282 + | Heptaprenyl diphosphate synthase component I menH 1085307 - 1086020 + | Methylase involved in ubiquinone/menaquinone biosynthesis TERM 1671 1086557 - 1086579 + G 76 -10.6 -2.93723 | overlap 1086553 ACGGCGTTGCTCATT GCGGCAAGTT GTC AACTTGGCGC TGTCGTTGCTGGGGC hepT 1086032 - 1086994 + | Geranylgeranyl pyrophosphate synthase TERM 1672 1087478 - 1087468 - g 87 -8.2 -4.44046 | overlap 1087469 CTGACTCGAAAGAAA GCGC GGC GCGC GAAATTCAACTATTT ndk 1087104 - 1087550 + | Nucleoside diphosphate kinase TERM 1673 1087551 - 1087576 + G 100 -6.9 -6.04953 | opp_overlap 1087555 1087557, overlap 1087555 GAGTGGGTATATTAA AAAAGGTAGGC ACAT GCCTATCTTTA TTTTTTTATTTCTGT TERM 1674 1087572 - 1087555 - g 81 -5.5 -5.21709 | opp_overlap 1087551 1087555, overlap 1087557 GGGTATATTAAAAAA GGTAGGC ACAT GCCTATC TTTATTTTTTTATTT TERM 1675 1087555 - 1087572 + G 100 -7.7 -5.36181 | opp_overlap 1087555 1087557, overlap 1087551 GGGTATATTAAAAAA GGTAGGC ACAT GCCTATC TTTATTTTTTTATTT TERM 1676 1088316 - 1088330 + G 85 -4.2 -5.53991 | AGTTTAATCGCGCTC TTCGCC CTG GGGGAA TTTTTTTCGTCGGTA cheR 1087538 - 1088419 + | Methyl-accepting chemotaxis protein (MCP) methyltransferase TERM 1677 1088422 - 1088439 + GF 89 -10.5 -4.06491 | TCGAAAAATGTAGTT GCGGCCG AATT CGGTCGC TTTCTGTGCAATTAA Aflv_1098 1088420 - 1089697 + | Chorismate synthase TERM 1678 1089768 - 1089793 + GF 79 -9.1 -3.88787 | opp_overlap 1089773, overlap 1089770 1089771 AAATGAAGTGCTGCA TATGATCGATC GCGT GATCGATCGTG TTTGTCCACATGTAA TERM 1679 1089770 - 1089791 + GF 77 -9.5 -3.53174 | opp_overlap 1089773, overlap 1089768 1089771 ATGAAGTGCTGCATA TGATCGATC GCGT GATCGATCG TGTTTGTCCACATGT TERM 1680 1089771 - 1089790 + GF 76 -10.8 -2.71422 | opp_overlap 1089773, overlap 1089770 1089768 TGAAGTGCTGCATAT GATCGATC GCGT GATCGATC GTGTTTGTCCACATG aroB 1089595 - 1090833 + | 3-dehydroquinate synthetase aroH 1090742 - 1091176 + | Chorismate mutase TERM 1681 1091263 - 1091287 + F 100 -13 -5.65927 | CATTAGGATACGTAC GCCTAAAGAC TGCCC GTCTTTAGGC TTTTTTGTTTCCCTC TERM 1682 1091837 - 1091826 - gf 78 -2.2 -5.48825 | GATCATGTAAAAAAA GAGC TATT ACTC ATTCATTACGTTCGT TERM 1683 1092794 - 1092779 - gf 76 -7.6 -4.23391 | opp_overlap 1092778 1092779, overlap 1092775 1092772 GAAAGAAACGAGAAA TAAGGC GAGC GCCTTA ATTCATGCCATTCAG trpE 1091292 - 1092851 + | Anthranilate synthase component I trpD 1092799 - 1093854 + | Anthranilate phosphoribosyltransferase TERM 1684 1094064 - 1094084 + G 73 -7.5 -4.09685 | GCGCATACGAACAGG CAGGTGCGG ATG CCGTGTCTG TTTTAACAGATGAAC TERM 1685 1094249 - 1094259 + G 75 -3.2 -5.09225 | CTCATTGGTGAAGCG CTTG ATC CGAG TTTTTTGCATGAACT trpC 1093847 - 1094608 + | Indole-3-glycerol phosphate synthase TERM 1686 1094734 - 1094713 - g 70 -5.9 -4.33808 | overlap 1094728 GAAAGCAAGCGAAAA GTCGAAC CAGAAAAT GTTCGAC GATGGCTATCCGGCG trpF 1094605 - 1095240 + | Phosphoribosylanthranilate isomerase trpB 1095234 - 1096430 + | Tryptophan synthase beta chain TERM 1687 1097126 - 1097154 + GF 73 -5.3 -4.61633 | gap 1, opp_overlap 1097125 1097122 GACGAATTGAACGAT GCGCATACGCGC TCAAAT GCGCTTAT-CGC TTTTTCCCAATATGT trpA 1096427 - 1097266 + | Tryptophan synthase alpha chain TERM 1688 1098053 - 1098041 - gf 91 -4.9 -5.61596 | ATGTGCACAAAAAAA TAAAC AAG GTTTA GACCAATTTTATGCA hisC 1097208 - 1098323 + | Histidinol-phosphate aminotransferase tyrA 1098305 - 1099408 + | Prephenate dehydrogenase TERM 1689 1099460 - 1099440 - g 75 -5.3 -4.89063 | overlap 1099442 GGAGTTAAAAACAAA TATCCACGC ATT GCGGGGAGA AATTGCTGTTCCGGG TERM 1690 1099458 - 1099442 - g 74 -7.9 -4.05491 | overlap 1099440 AGTTAAAAACAAATA TCCACGC ATT GCGGGGA GAAATTGCTGTTCCG aroE 1099423 - 1100709 + | 5-enolpyruvylshikimate-3-phosphate synthase TERM 1691 1100702 - 1100729 + F 87 -4.9 -5.49729 | opp_overlap 1100705, overlap 1100705 ATCTTCGCATGTTAC AAAGCTGATTC CATGAC GGATCAGCTTC TTTTTTTGCATGCTT TERM 1692 1100705 - 1100726 + F 81 -6.6 -4.8236 | opp_overlap 1100705, overlap 1100702 TTCGCATGTTACAAA GCTGATTC CATGAC GGATCAGC TTCTTTTTTTGCATG Aflv_1110 1100769 - 1102052 + | TPR repeat protein TERM 1693 1102314 - 1102302 - g 70 -5.5 -4.49389 | overlap 1102303 ATTTTATAAGCAAAA CGTCG TTA CGACA GATGCAGAAAAATCG Aflv_1111 1102045 - 1102608 + | hypothetical protein TERM 1694 1102634 - 1102591 - f 80 -10.5 -3.68073 | gap 1, opp_overlap 1102597, overlap 1102597 GAGCTGACCGAACAA TTAAAAGCGTTGCGTTAACC TCGGT GGTTT-CGCAACGCTTTTTA CGATGTGTATATTTG TERM 1695 1102628 - 1102597 - f 91 -9.5 -4.56736 | gap 1, opp_overlap 1102597, overlap 1102591 ACCGAACAATTAAAA GCGTTGCGTTAACC TCGGT GGTTT-CGCAACGC TTTTTACGATGTGTA TERM 1696 1102597 - 1102628 + F 91 -9.5 -4.65838 | gap 1, opp_overlap 1102591 1102597 ACCGAACAATTAAAA GCGTTGCGTTAACC TCGGT GGTTT-CGCAACGC TTTTTACGATGTGTA Aflv_1112 1102715 - 1103149 + | hypothetical protein TERM 1697 1103514 - 1103498 - g 77 -6.5 -4.74084 | AAAGTAAAAGTAAAA GACGCGT GGT ACGAGTC AGAAGAGCCAAGATC qcrA 1103246 - 1103788 + | Menaquinol:cytochrome c oxidoreductase (iron-sulfur subunit) qcrB 1103792 - 1104466 + | Menaquinol:cytochrome c oxidoreductase (cytochrome b subunit) qcrC 1104492 - 1105259 + | Menaquinol-cytochrome c reductase cytochrome b/c subunit TERM 1698 1105289 - 1105269 - f 100 -14.1 -4.16921 | opp_overlap 1105269 GAATAATTTGTAAAA GCTGACTGA ACA TCAGTCAGC TTTTTTGTACATATG TERM 1699 1105269 - 1105289 + F 100 -14.1 -5.29782 | opp_overlap 1105269 GAATAATTTGTAAAA GCTGACTGA ACA TCAGTCAGC TTTTTTGTACATATG Aflv_1116 1105302 - 1105886 + | Predicted membrane protein Aflv_1117 1105953 - 1106726 + | hypothetical protein TERM 1700 1106723 - 1106752 + T 70 -9.4 -2.62735 | opp_overlap 1106724 1106729, overlap 1106729 1106745 GGTGAGAGATAAACA ATAAAAGCGTCC ATCGTC GGACGCTTTTAC TCATGTAACGGCTGT TERM 1701 1106751 - 1106724 - T 100 -13.6 -4.18674 | opp_overlap 1106723 1106729 1106745, overlap 1106729 GTGAGAGATAAACAA TAAAAGCGTCCA TCGT CGGACGCTTTTA CTCATGTAACGGCTG TERM 1702 1106729 - 1106746 + T 85 -8.4 -4.33274 | opp_overlap 1106724 1106729, overlap 1106723 1106745 AGATAAACAATAAAA GCGTCC ATCGTC GGACGC TTTTACTCATGTAAC TERM 1703 1106746 - 1106729 - T 90 -9.1 -5.06472 | opp_overlap 1106729 1106723 1106745, overlap 1106724 AGATAAACAATAAAA GCGTCCA TCGT CGGACGC TTTTACTCATGTAAC Aflv_1118 1107618 - 1106749 - | Uncharacterized membrane protein TERM 1704 1107687 - 1107675 - H 71 -4.9 -4.59109 | CATACCCGTCAAAAA CATTT GTC AAATG CCCCACTTTTAGCTA Aflv_1119 1107718 - 1108059 + | Predicted pyrophosphatase TERM 1705 1108428 - 1108408 - gf 91 -3.9 -5.80817 | opp_overlap 1108407 1108420 1108422 CGGAAGAGAAAAAAA TTGGTGCGA TTA TTGCGCCAA ACTTTGCGATTGGTG dapB 1108032 - 1108850 + | Dihydrodipicolinate reductase mgsA 1108843 - 1109271 + | Methylglyoxal synthase Aflv_1122 1109238 - 1109963 + | N-acetylglucosaminylphosphatidylinositol de-N-acetylase related enzyme, LmbE family TERM 1706 1110298 - 1110278 - g 73 -8.4 -3.64703 | opp_overlap 1110282, overlap 1110282 GCCTTTTTAGCGAAA CAAATGGT TGGTG ACCATTTG AAAATCGTGACGACG Aflv_1123 1109960 - 1111093 + | Glycosyltransferase cca 1111090 - 1112283 + | tRNA nucleotidyltransferase TERM 1707 1112355 - 1112329 - gf 82 -5.8 -5.00616 | opp_overlap 1112336, overlap 1112332 TGTCCGGGCAAAAAA TTAGCGAGCAGC TCG GGTGCTCACGAA CAGCTATTTGGAAAC birA 1112244 - 1113233 + | Biotin operon repressor containing HTH and biotin-(acetyl-CoA carboxylase) ligase domains TERM 1708 1113383 - 1113413 + F 85 -4.1 -5.68039 | opp_overlap 1113382 1113383, overlap 1113384 GGAGTAGAACAAAGG TCCTTCTTTCT CATTTTGGC AGAAAGAAGGC TTTTTTTATCCATTT TERM 1709 1113384 - 1113412 + F 73 -7.6 -3.98383 | opp_overlap 1113382 1113383, overlap 1113383 GAGTAGAACAAAGGT CCTTCTTTCT CATTTTGGC AGAAAGAAGG CTTTTTTTATCCATT panB 1113398 - 1114285 + | Ketopantoate hydroxymethyltransferase TERM 1710 1114374 - 1114355 - gf 73 -2.1 -5.18355 | gap 1, overlap 1114358 GCCAAAAAGGAAAAA CGATCGGC TTTGT GCCAA-CG ATGGGATACTTGCAT panC 1114258 - 1115136 + | Panthothenate synthetase panD 1115149 - 1115532 + | Aspartate 1-decarboxylase TERM 1711 1115509 - 1115550 + F 100 -11.6 -5.38054 | gap 2, opp_overlap 1115511 GAACTCATTGTCCAA GAGCCGGC--GGCGACCGTT TTAT AACGGGCGCCATGCCGCCTC TTTTTATTTGTCACA TERM 1712 1115658 - 1115644 - g 70 -2.8 -5.01732 | AATGCCCCGAAAAAA GAAGAT CGC ATCATC CAAATCGGTTTTGTC TERM 1713 1116955 - 1116966 + G 73 -5.8 -4.56597 | opp_overlap 1116954 1116955 CATCATTTAGAAGAT GTGG CTGC CCAC TTTTTCGGAAGGCAC TERM 1714 1117493 - 1117505 + G 77 -4.8 -5.05505 | CTTCGGCTACGTTAA CGAC AAATG GTCG TTTTTCATTTATCAT dnaQ 1115587 - 1118229 + | DNA polymerase III, epsilon subunit and Rad3-related DNA helicase Aflv_1130 1118264 - 1119022 + | Predicted hydrolase (metallo-beta-lactamase superfamily) TERM 1715 1119043 - 1119027 - f 93 -10.1 -5.07567 | TGACATTTTAAAAAA GGGCCAA CGT TCGGCCC GCGGTGTGTACGTTA Aflv_1131 1119185 - 1119376 + | hypothetical protein Aflv_1132 1119383 - 1119871 + | hypothetical protein aspB 1119868 - 1121055 + | Aspartate aminotransferase TERM 1716 1121050 - 1121070 + F 93 -9.7 -4.99568 | AATGAAAAAACGCGT GGCTAGTCG ATA TGGCTAGCC TTTTCTTTCATCTTG TERM 1717 1121931 - 1121908 - gf 71 -6 -4.2679 | CAATCGGTATTAAAA CATTGTCAGC TCGA GCTGAAAACG CTCGGACGCGATACG asnS 1121083 - 1122447 + | Asparaginyl-tRNA synthetase TERM 1718 1122477 - 1122456 - gTf 84 -10.1 -3.86944 | opp_overlap 1122456 CCCATAATGATGAAA TCCCCCGTG CTCA CATGGGGGA TTTGTTTTATGATAT TERM 1719 1122456 - 1122477 + GTF 100 -12.3 -4.81357 | opp_overlap 1122456 CCCATAATGATGAAA TCCCCCGTG CTCA CATGGGGGA TTTGTTTTATGATAT dnaD 1122371 - 1123189 + | Initiation of chromosome replication (DNA synthesis) TERM 1720 1123724 - 1123743 + GT 74 -4.2 -4.96028 | opp_overlap 1123723 1123722, overlap 1123726 TCCGAAAGAAGAATG GTCGGTGA CCCA TCATCGCC TTATTTTTTTTGGAC Aflv_1137 1123916 - 1123779 - | hypothetical protein nth 1123176 - 1123853 + | Predicted EndoIII-related endonuclease Aflv_1138 1123935 - 1124345 + | hypothetical protein TERM 1721 1124333 - 1124366 + T 88 -11.2 -3.58932 | opp_overlap 1124338, overlap 1124338 ACAAATGGCTCAACA AAAAAGAGACTGAG CGCGTC CTCAGTCTCTTTTC TTACTTATTGATTAT TERM 1722 1124361 - 1124338 - T 100 -11.1 -5.4505 | opp_overlap 1124338 1124333 TGGCTCAACAAAAAA GAGACTGAG CGCGTC CTCAGTCTC TTTTCTTACTTATTG TERM 1723 1124338 - 1124361 + T 93 -11.1 -4.84262 | opp_overlap 1124338, overlap 1124333 TGGCTCAACAAAAAA GAGACTGAG CGCGTC CTCAGTCTC TTTTCTTACTTATTG ponA 1126965 - 1124371 - | Membrane carboxypeptidase (penicillin-binding protein) TERM 1724 1126476 - 1126515 + g 75 -8.8 -3.59247 | GCCATAATTCTTGCA CTTTCCGTTTTAACGTTT TTTC AGGTGTTAAAAAGGAAAG TTTGACAACTTGTTG recU 1127634 - 1126981 - | Penicillin-binding protein-related factor A, putative recombinase TERM 1725 1127197 - 1127175 - G 72 -6.2 -4.35524 | overlap 1127176 TCGTGAAACGCAAAA TCACGAAGCA AAT CGCTCCGTGG GCTAACACTTGTTTC TERM 1726 1127196 - 1127176 - G 74 -9.7 -3.20832 | overlap 1127175 CGTGAAACGCAAAAT CACGAAGCA AAT CGCTCCGTG GGCTAACACTTGTTT TERM 1727 1127322 - 1127334 + g 80 -9.1 -3.9392 | opp_overlap 1127321 1127322 ATATGCCATTATAAT CCGTC GTG GACGG TTGTTTAAAGTACGC TERM 1728 1128854 - 1128837 - g 74 -4.9 -4.7497 | opp_overlap 1128837 TGCATGTACTAAAAA TGAAATC AGCC GATTCCA TTGTACTTGTCATTA Aflv_1141 1127747 - 1129492 + | Predicted sulfate permease MFS superfamily Aflv_1142 1129489 - 1129833 + | Transcriptional regulator, ArsR family TERM 1729 1129844 - 1129816 - f 95 -11.8 -4.28323 | opp_overlap 1129816 ATGAATGAAGAGAAA GAGACAGGGG GAGTGTAAT CCCCTGTCTC TTTTATGTAGAAGGA TERM 1730 1129816 - 1129844 + F 100 -12.5 -4.52589 | opp_overlap 1129816 ATGAATGAAGAGAAA GAGACAGGGGG AGTGTAA TCCCCTGTCTC TTTTATGTAGAAGGA TERM 1731 1129887 - 1129915 + F 75 -2.9 -5.24003 | TCTAGCTTTTTGTCG CCGAAGCCTGTCG TTT CTTCTTGCTTCGG TTTTTGCTTTTTCTT Aflv_1143 1130088 - 1130333 + | hypothetical protein TERM 1732 1130358 - 1130336 - T 82 -7.7 -4.52589 | opp_overlap 1130338, overlap 1130338 TCCGGCCATATAAAA GAGGTGGCA AATTG TGCCACCTT TATTCTTTTACACGC TERM 1733 1130356 - 1130338 - T 84 -10.3 -3.87627 | opp_overlap 1130338, overlap 1130336 CGGCCATATAAAAGA GGTGGCA AATTG TGCCACC TTTATTCTTTTACAC TERM 1734 1130338 - 1130356 + T 93 -10.3 -4.67697 | opp_overlap 1130336 1130338 CGGCCATATAAAAGA GGTGGCA AATTG TGCCACC TTTATTCTTTTACAC Aflv_1144 1130525 - 1130358 - | hypothetical protein Aflv_1145 1130798 - 1130586 - | hypothetical protein Aflv_1146 1130952 - 1131287 + | Uncharacterized spore coat related protein TERM 1735 1131268 - 1131295 + T 100 -10 -5.52096 | opp_overlap 1131261 1131268 TCGTAAAAGGATTAA CGCAAACGTT TAAATTGT AACGTTTGCG TTTTTTCTTGCATTT TERM 1736 1131295 - 1131268 - T 77 -10 -3.37533 | opp_overlap 1131268, overlap 1131261 TCGTAAAAGGATTAA CGCAAACGTT TAAATTGT AACGTTTGCG TTTTTTCTTGCATTT TERM 1737 1131306 - 1131328 + T 81 -5.7 -5.03994 | TTGCGTTTTTTCTTG CATTTATTC GATTG GGATAAATG TTTTTCTCTGTGGGA Aflv_1147 1131740 - 1131309 - | Molecular chaperone (small heat shock protein) Aflv_1148 1132011 - 1131808 - | hypothetical protein TERM 1738 1131956 - 1131968 + g 91 -7.7 -4.82901 | TGTAAACCACGTTCA GCCAT CAA ATGGC TTTTTGTGCAAAACA TERM 1739 1132047 - 1132096 + H 100 -11 -5.61881 | gap 1, opp_overlap 1132045 1132047 1132065 GTCAAGAGACGAAGA GAGACC-ATACATGCATAATAAG CAAAA CTTATTGTGCTTGTTTTGGTCTC TTTTTGTTTTTACAA TERM 1740 1132096 - 1132047 - H 73 -9.5 -3.25475 | gap 1, opp_overlap 1132047, overlap 1132045 1132065 GTCAAGAGACGAAGA GAGACC-ATACATGCATAATAAGC AAA ACTTATTGTGCTTGTTTTGGTCTC TTTTTGTTTTTACAA TERM 1741 1132913 - 1132928 + G 73 -9 -3.44672 | opp_overlap 1132909, overlap 1132911 1132909 GACCAAGCACATTTT CCGCTT AAGC AAGCGG TATATTTTGATACGC glpD 1132100 - 1133767 + | Glycerol-3-phosphate dehydrogenase TERM 1742 1133773 - 1133788 + T 100 -11.8 -4.89838 | TGAAGCGTAACGTTA GGCGGG ACAT CCCGCC TTTTCTATTTCTTCC Aflv_1150 1134666 - 1133770 - | hypothetical protein TERM 1743 1134631 - 1134612 - GT 100 -10.7 -5.4477 | AAAGTTTCAAAAAAA CACCGGC GATCGT GCCGGTG TCAATGAAATTGTAC Aflv_1151 1135057 - 1134632 - | Molecular chaperone (small heat shock protein) TERM 1744 1135146 - 1135125 - R 100 -8.8 -5.71712 | opp_overlap 1135125 TGTTATACAAAAAAA CTTGCCTT AGCGGG AAGGCAAG TTTTCAAGCTGTTGT TERM 1745 1135125 - 1135146 + r 82 -8.8 -4.14874 | opp_overlap 1135125 TGTTATACAAAAAAA CTTGCCTT AGCGGG AAGGCAAG TTTTCAAGCTGTTGT Aflv_1152 1135391 - 1135131 - | hypothetical protein Aflv_1153 1136365 - 1135403 - | hypothetical protein TERM 1746 1136233 - 1136245 + g 100 -7.7 -5.54264 | CAACACGTGTCAATT CAAGC GGT GCTTG TTTTTTTGGCTCTTT Aflv_1154 1137502 - 1136411 - | Signal transduction diguanylate cyclase TERM 1747 1137548 - 1137570 + r 89 -9.2 -4.66163 | opp_overlap 1137548 GCGAACGAAAAAAAA TGTTGCGG ACAAACG CCGCAACA TTTTTAAATCGAAAT TERM 1748 1137570 - 1137548 - R 100 -9.2 -5.95166 | opp_overlap 1137548 GCGAACGAAAAAAAA TGTTGCGG ACAAACG CCGCAACA TTTTTAAATCGAAAT ampS 1138806 - 1137574 - | Leucyl aminopeptidase (aminopeptidase T) TERM 1749 1138658 - 1138674 + g 73 -3.5 -5.07107 | ACATGCACATGTTTT GCGCCCG CTT CGTACGC TTTTTTAGCAATTTC Aflv_1156 1138924 - 1139355 + | hypothetical protein TERM 1750 1139834 - 1139817 - g 71 -6.9 -4.08144 | TTTACGAATGAGAAA GGGGAAC ATTT GCCCCCC ATACCGTCTTCTTTG Aflv_1157 1139352 - 1140473 + | Glycerate kinase TERM 1751 1140462 - 1140483 + F 90 -8.8 -5.03227 | GCCCGTACGCTCAAG CGGTTTTC CTAGTC GAAAACCG TTTTATTTATGCTCT TERM 1752 1140968 - 1140935 - g 71 -9.7 -2.62184 | opp_overlap 1140933 CGTTCGCGTATATCA TTGCGTTACTATATG TCAT CATGCAGCAACGCAA AGTAGTTGTCGTATG TERM 1753 1142852 - 1142873 + G 71 -10.1 -2.64651 | overlap 1142849 1142849 TTCAAGGATACGTTC TCGGCAAGC CTGT GCCTGCCGA TCAATTTGCAAAATT Aflv_1158 1140622 - 1142919 + | Multidomain signal transduction protein (GGDEF and EAL domains) TERM 1754 1142901 - 1142925 + F 100 -7.9 -5.61596 | opp_overlap 1142901 ATTATATATCGAAAA CCAACTTCCGT ACG ATTGAAGTTGG TTTTTTTATAAAAAT TERM 1755 1142952 - 1142940 - f 74 -4.9 -4.82901 | GTTTTTTTATAAAAA TCATT GAC AATGA TAATCAATTCATGTA TERM 1756 1143622 - 1143649 + GF 72 -9.2 -3.09028 | overlap 1143621 CGCACGATCATTATG GTGTTGCATGAT TTAA ATCAAGCAGCAC GTTTTGCAGATTATA fhuC 1143037 - 1143897 + | Ferrichrome ABC transporter (ATP-binding protein) TERM 1757 1144507 - 1144497 - gf 72 -3.2 -5.05577 | AAATGAAATTAAAAA TGCC GAA AGCA GTTGAAGAACATGCA fhuD 1143824 - 1144765 + | Ferrichrome ABC transporter (ferrichrome-binding protein) TERM 1758 1144809 - 1144766 - g 86 -12.1 -3.16564 | gap 1, opp_overlap 1144773 1144777, overlap 1144772 TTTTTAGGTGAGTAA CATAAAGGAAAGAGGAGTTC GTCGT GAATTCCTCTTTC-TTTATG CAAATAGAAAAGAGA TERM 1759 1144804 - 1144772 - g 76 -7.8 -4.23674 | opp_overlap 1144773 1144777, overlap 1144766 GGTGAGTAACATAAA GGAAAGAGGAGTTC GTCGT GAATTCCTCTTTCT TTATGCAAATAGAAA TERM 1760 1144773 - 1144803 + G 100 -14.2 -3.87815 | opp_overlap 1144772 1144766, overlap 1144777 GTGAGTAACATAAAG GAAAGAGGAGTTCG TCG TGAATTCCTCTTTC TTTATGCAAATAGAA TERM 1761 1144777 - 1144799 + G 95 -9.2 -4.55697 | opp_overlap 1144772 1144766, overlap 1144773 GTAACATAAAGGAAA GAGGAGTTCG TCG TGAATTCCTC TTTCTTTATGCAAAT TERM 1762 1144981 - 1144963 - g 71 -2.4 -5.22481 | CAGAAACAAACAAAA TCGCGA CGATGAT TCACGA AGTGCGTTTGCCGCG TERM 1763 1145412 - 1145425 + G 76 -6.7 -4.57569 | CCTTTTATTTGTTTT GCGAT GCTT ATCGC TTTTTGGCAAAGTCG fhuB 1144758 - 1145801 + | Ferrichrome ABC transporter (permease) TERM 1764 1146552 - 1146566 + G 70 -7.8 -3.64703 | overlap 1146553 TGACGGCAGTGGCGC TTGCCG CAT CGGCAG TTTCAGTCACGGGCG fhuG 1145798 - 1146805 + | Ferrichrome ABC transporter (permease) TERM 1765 1147873 - 1147851 - g 71 -8.4 -3.44146 | opp_overlap 1147850 GTTGGCGATAACGAA CGAGCGCT TGCGTTT AGCGCCCG CTTGCGTGAACGTGG kbl 1146867 - 1148039 + | 7-keto-8-aminopelargonate synthetase TERM 1766 1148146 - 1148157 + G 71 -3 -5.00616 | ATGGGAGCATATGCA TGAT GTCA ATCA TTTTTTAGCAAAAGC Aflv_1164 1148036 - 1148716 + | Carboxylesterase bioH (Biotin synthesis protein bioH) Aflv_1165 1148697 - 1149476 + | SAM-dependent methyltransferase TERM 1767 1149461 - 1149487 + T 79 -5.3 -5.08824 | gap 1, overlap 1149464 ATACCATTGCATTTT TATTGACATCAC TTAG GTGGTGTC-ATA TTTTTTCCGTAAAAA TERM 1768 1149464 - 1149485 + T 89 -9.5 -4.17608 | overlap 1149461 CCATTGCATTTTTAT TGACATCAC TTAG GTGGTGTCA TATTTTTTCCGTAAA Aflv_1166 1150308 - 1149469 - | S-adenosylmethionine decarboxylase TERM 1769 1149975 - 1149951 - G 75 -8.5 -3.89822 | opp_overlap 1149951 1149954, overlap 1149954 TATCGAGCGCACAAA CGACCGCTTGT GGT ACAGGCGGTTG TTCTTTTGGCACTTC TERM 1770 1149951 - 1149975 + g 100 -12.9 -4.19577 | opp_overlap 1149951 1149954, overlap 1149954 TATCGAGCGCACAAA CGACCGCTTGT GGT ACAGGCGGTTG TTCTTTTGGCACTTC TERM 1771 1149954 - 1149972 + g 93 -11 -4.20868 | opp_overlap 1149951 1149954, overlap 1149951 CGAGCGCACAAACGA CCGCTTGT GGT ACAGGCGG TTGTTCTTTTGGCAC Aflv_1167 1150352 - 1152178 + | Kef-type K+ transport system (membrane and NAD-binding components) TERM 1772 1152182 - 1152200 + F 88 -8.1 -5.15526 | opp_overlap 1152182, overlap 1152187 GGGAAATATTGAAAA CCGAGGG AGAAA TCCTCGG TTTTTCCTTTTCTGT TERM 1773 1152200 - 1152182 - f 78 -7.4 -4.323 | opp_overlap 1152182 1152187 GGGAAATATTGAAAA CCGAGG GAGAAAT CCTCGG TTTTTCCTTTTCTGT TERM 1774 1152187 - 1152207 + F 79 -6.9 -4.59027 | opp_overlap 1152182, overlap 1152182 ATATTGAAAACCGAG GGAGAAATC CTC GGTTTTTCC TTTTCTGTGATGATT Aflv_1168 1152290 - 1152616 + | hypothetical protein TERM 1775 1152753 - 1152735 - g 86 -8.8 -4.32067 | overlap 1152732 GAGGTTATAAAAGAA CCGCTCCA ACG TGCAGCGG AGCGGGGAGCCGATA TERM 1776 1153960 - 1153972 + G 78 -5.5 -5.03145 | TGTTTTGTTCTTCCA TTCGC CAA GCGGA TTTTTTGGCCAATTA TERM 1777 1154854 - 1154835 - g 70 -3.5 -4.78107 | overlap 1154836 1154844 1154845 TACGACGAGCAAAAA GTGGCGA AACTCA TCGCCAA AATGCCGATGACGAA Aflv_1169 1152597 - 1155032 + | HKD family nuclease fused to DNA/RNA helicase of superfamily II Aflv_1170 1155780 - 1155430 - | Transposase Aflv_1171 1155918 - 1156841 + | hypothetical protein TERM 1778 1156827 - 1156857 + F 91 -6.3 -5.48054 | gap 1, opp_overlap 1156829 TTAAAAGATCGTAAC TATTCAGC-CACAT GATC AAGTGAGCTGAATA TTTTTTGCTTTTCCT Aflv_1172 1156904 - 1158361 + | Transposase TERM 1779 1161144 - 1161155 + G 71 -3 -5.06103 | opp_overlap 1161144 AAAAATTTAGAGAAC CATT TAAA AATG TTTTTTAACGATTAT pcrA 1159497 - 1162394 + | Superfamily I helicase domain and RecB family exonuclease domain TERM 1780 1162410 - 1162397 - g 70 -3.9 -4.90381 | opp_overlap 1162397 TGGAAGACAATAAAA TTCAA CAAG TTGAA CATTTTAAGTTTGAA TERM 1781 1163971 - 1164000 + G 71 -8.8 -3.26444 | opp_overlap 1163963, overlap 1163963 1163968 1163966 AGAGAATTGGTGGAT TCCATCATGATT GATTGG AATTATGATGGA TCTGTTCTTGAGCCA Aflv_1174 1162381 - 1164150 + | Adenine specific DNA methylase Mod TERM 1782 1164291 - 1164332 + G 100 -8.1 -5.40474 | gap 1, opp_overlap 1164293, overlap 1164294 1164296 CTGAGAATCCTCAAT CAT-TTTTACGAGTGCCTCA ATT TGAGGCGCTCGAAATGTATG TTTTTTTGAAAGAGT TERM 1783 1164294 - 1164328 + G 84 -10 -3.76885 | opp_overlap 1164293, overlap 1164291 1164296 AGAATCCTCAATCAT TTTTACGAGTGCCTCA ATT TGAGGCGCTCGAAATG TATGTTTTTTTGAAA TERM 1784 1164296 - 1164326 + G 100 -14.8 -3.44915 | opp_overlap 1164293, overlap 1164294 1164291 AATCCTCAATCATTT TTACGAGTGCCTCA ATT TGAGGCGCTCGAAA TGTATGTTTTTTTGA TERM 1785 1164419 - 1164403 - g 78 -2.3 -5.55664 | overlap 1164406 GTACTATGAAAAAAA TAAGTTT GCG AAACGTA CAAGCCCCTTCATTG TERM 1786 1164416 - 1164406 - g 71 -4 -4.8487 | overlap 1164403 CTATGAAAAAAATAA GTTT GCG AAAC GTACAAGCCCCTTCA TERM 1787 1166414 - 1166388 - g 78 -2.4 -5.4588 | CAAAACCAGAAAAAA TATTGTTTAC AGATTTA GTAAACCATA AAGATGTTCAGGAAA Aflv_1175 1164143 - 1166737 + | Predicted type III restriction-modification enzyme, helicase subunit fused to restriction endonuclease-like domain TERM 1788 1166837 - 1166811 - f 100 -15.3 -3.16921 | opp_overlap 1166811, overlap 1166815 ACTAACTCGTAGTAA CAAACGCCAGA ATCCA TCTGGCGTTTG TTTTATTTTAGTAAT TERM 1789 1166811 - 1166837 + F 100 -15.3 -5.14626 | opp_overlap 1166811 1166815 ACTAACTCGTAGTAA CAAACGCCAGA ATCCA TCTGGCGTTTG TTTTATTTTAGTAAT TERM 1790 1166833 - 1166815 - f 89 -10.3 -4.2461 | opp_overlap 1166811, overlap 1166811 ACTCGTAGTAACAAA CGCCAGA ATCCA TCTGGCG TTTGTTTTATTTTAG TERM 1791 1167600 - 1167621 + G 73 -5.2 -4.67651 | opp_overlap 1167600 TTCAGCTACAAGAAA TCGTCGAA AAAAGC TTCGATGA TTTGTTTTGGCATCT Aflv_1176 1166924 - 1170670 + | Superfamily I DNA/RNA helicase TERM 1792 1170765 - 1170783 + F 80 -6 -4.71061 | GAGGAAGTGGCGTTA TTAGGTAG TGA CCACCTAA TTTTTAAATATGGAT TERM 1793 1170894 - 1170855 - f 75 -9.4 -3.36878 | gap 1, opp_overlap 1170870 TTTAGTCACTTATAA TGTTCCTTGCGAATAGTGC CTG GCACTGTTCGCAAAGG-CA TGCACATTGAGCGAG htrA 1171197 - 1172399 + | Serine protease Do (heat-shock protein) TERM 1794 1172575 - 1172559 - g 73 -5.8 -4.45544 | GTCGAGGAAGGAAAA GCGGTC GCTCA AACCGC AAGACAACTCGATAT TERM 1795 1172765 - 1172747 - g 71 -3 -5.0538 | CGCGATCTTAAAAAA GGCCATGA GCA TCTTCGCC AAAAATCAGAAGTAA Aflv_1178 1172484 - 1172780 + | Transposase Aflv_1179 1172819 - 1173343 + | Transposase Aflv_1180 1174608 - 1173763 - | Transcriptional regulator containing HTH domain, AraC family TERM 1796 1173994 - 1174025 + g 75 -10.4 -2.89797 | opp_overlap 1173992 1173997, overlap 1173997 GAATTGAACGGAACT CAATCCAAAATG AGAGGCGA CATTTTGGATTG TAATGTTTGTAAAAG TERM 1797 1174684 - 1174695 + H 70 -3 -5.00884 | opp_overlap 1174684 AGTACTACCTAAAAG CATT TTTA AATG TTTTTTAGAAAAGAT Aflv_1181 1174753 - 1175925 + | Galactonate dehydratase TERM 1798 1176207 - 1176193 - g 74 -5 -4.90013 | opp_overlap 1176193, overlap 1176194 TAAGTTAATGAAAAA CGAAGA ACA TCTTCA TGATATTGCACTAGC gabD 1175948 - 1177399 + | Succinyl-CoA synthetase (alpha subunit) ansB 1177425 - 1178774 + | Aspartate ammonia-lyase TERM 1799 1179523 - 1179538 + GF 72 -7.6 -3.77722 | opp_overlap 1179523 TTTACAGGGAGTACA GCTGTT GGAA AACAGC TTGTTCATGATTCAG dhaS 1178743 - 1180284 + | NAD-dependent aldehyde dehydrogenase gutB 1180330 - 1181487 + | Zn-dependent alcohol dehydrogenase TERM 1800 1181492 - 1181518 + F 88 -11.6 -3.60296 | opp_overlap 1181492 GAGTTTCATAATGAA CTTGGCCGCTCT TGT GGAGTGGTCAAG TTTCAAATAAAAGTG gbsB 1181547 - 1182743 + | Fe-dependent alcohol dehydrogenase, class IV opuD 1182834 - 1184423 + | Choline-glycine betaine transporter TERM 1801 1184437 - 1184465 + F 100 -15.3 -4.89605 | AAATTTGCGACGATC CGCGAACAGTTCC TAT GGTGCTGTTCGCG TTTATTATTTTTTTA TERM 1802 1185163 - 1185130 - f 71 -6.8 -4.03995 | opp_overlap 1185128 1185126 1185152, overlap 1185128 1185131 TTTTTGAGAAAAATA GGTATTTTCCGCAA TTAAAT TTGCGGGAAATACG GATGTTTTTCCTCGC TERM 1803 1185162 - 1185131 - f 75 -10.3 -3.01915 | opp_overlap 1185128 1185126 1185152, overlap 1185130 1185128 TTTTGAGAAAAATAG GTATTTTCCGCAA TTAAAT TTGCGGGAAATAC GGATGTTTTTCCTCG Aflv_1188 1185233 - 1186012 + | Predicted secreted protein TERM 1804 1186810 - 1186800 - f 78 -4 -5.31158 | TAAAAAAACGAAAAA CTAA AAA TTAG CACGGTTGTTGATTA TERM 1805 1187029 - 1186978 - f 95 -13.8 -3.32521 | overlap 1186991 ACGAGATTTTCAGAA TCCAGCGCCAATAGGGCATTTCCG GTAT CGAAAATGCCCTAAGAGGACTGGA GAATCGTTTGGAGAG TERM 1806 1187016 - 1186991 - f 95 -14.1 -3.0464 | overlap 1186978 AATCCAGCGCCAATA GGGCATTTCCG GTAT CGAAAATGCCC TAAGAGGACTGGAGA Aflv_1189 1187161 - 1187517 + | hypothetical protein TERM 1807 1187866 - 1187892 + T 100 -15.2 -4.76802 | opp_overlap 1187874, overlap 1187867 GGACTAATATATTTT TGCGAACAGTGC CTC GCGCTGTTCGCG TTTGTTATTTTTGGA TERM 1808 1187867 - 1187891 + T 100 -16.5 -3.44454 | opp_overlap 1187874, overlap 1187866 GACTAATATATTTTT GCGAACAGTGC CTC GCGCTGTTCGC GTTTGTTATTTTTGG TERM 1809 1188117 - 1188093 - T 83 -4.9 -5.2422 | opp_overlap 1188093 1188100 1188109 AAGGACAGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTACC Aflv_1190 1189628 - 1188180 - | Transposase TERM 1810 1189912 - 1189926 + G 77 -3.5 -5.24129 | GATTCATATGATTTT TGCGG ATCCA CCGTA TTTTTTATCAAACGG Aflv_1191 1189787 - 1190578 + | DNA modification methylase TERM 1811 1191231 - 1191212 - g 90 -10.8 -4.02108 | GTGACTATAAGGAAA GTCGTGAA TTTG TTCACGAC AAAACGTTTGTTTAT TERM 1812 1191407 - 1191423 + G 87 -6.5 -5.18357 | opp_overlap 1191394 1191391 1191405 1191407 CAGATCCGAAAAACA CGGATCC GGC GGATGCG TTTTTTGATGAATTG Aflv_1192 1190617 - 1191546 + | Site-specific DNA methylase TERM 1813 1191677 - 1191689 + G 71 -9.1 -3.26947 | opp_overlap 1191667 1191677 TGCAATCCGCCAATA TCGCG AAC CGCGA TTAATGTGCAAATTC Aflv_1193 1191549 - 1192835 + | hypothetical protein TERM 1814 1192911 - 1192935 + F 88 -7.8 -5.07652 | overlap 1192912 CATTTTCCACCCTCT TGAGCGCCCT TTTTC ACGGCGCTCG TTTTGTTTTGCGCAA TERM 1815 1192912 - 1192934 + F 76 -9.1 -3.63868 | overlap 1192911 ATTTTCCACCCTCTT GAGCGCCCT TTTTC ACGGCGCTC GTTTTGTTTTGCGCA Aflv_1194 1193049 - 1193198 + | hypothetical protein Aflv_1197 1193984 - 1195075 + | Uncharacterized protein containing TPR-repeats TERM 1816 1195070 - 1195095 + F 81 -2.5 -5.67063 | overlap 1195072 TTGTTTTGTGACGAA TTGTGATGACA TGTG TGTCATCGCTC TTTTTTTATACTAAG TERM 1817 1195072 - 1195093 + F 90 -9.5 -4.47611 | overlap 1195070 GTTTTGTGACGAATT GTGATGACA TGTG TGTCATCGC TCTTTTTTTATACTA Aflv_1198 1195121 - 1196539 + | Peptidase family M28 TERM 1818 1196527 - 1196545 + F 88 -8.1 -5.05228 | opp_overlap 1196527 1196526 GCAAGGTGGAAAAAG GGACGTC ATTTA GGCGTCC TTTTTGTGATTTCAT Aflv_1199 1196813 - 1197121 + | Predicted nucleotidyltransferase TERM 1819 1197126 - 1197148 + T 93 -9.9 -4.99134 | gap 1, opp_overlap 1197126 ATGAGAAATAAAAAA GCAGG-GGAC AATC GTCCGCCTGC TTTTTCGTTTACACT TERM 1820 1197148 - 1197126 - T 100 -9.9 -5.73978 | gap 1, opp_overlap 1197126 ATGAGAAATAAAAAA GCAGG-GGAC AATC GTCCGCCTGC TTTTTCGTTTACACT Aflv_1200 1199442 - 1197157 - | Catalase (peroxidase I) TERM 1821 1199559 - 1199504 - R 95 -11.4 -5.14965 | opp_overlap 1199513, overlap 1199507 1199513 ATTTTTATCAAAAAA TTATAAAAATCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGATTTATACGT TTACATCCGTATCTC TERM 1822 1199556 - 1199507 - R 100 -19.7 -3.41701 | opp_overlap 1199513, overlap 1199504 1199513 TTTATCAAAAAATTA TAAAAATCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGATTTATA CGTTTACATCCGTAT TERM 1823 1199513 - 1199550 + r 100 -14.3 -4.02534 | opp_overlap 1199507 1199504 1199513 AAAAAATTATAAAAA TCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGA TTTATACGTTTACAT TERM 1824 1199550 - 1199513 - R 100 -18.7 -5.14894 | opp_overlap 1199513, overlap 1199507 1199504 AAAAAATTATAAAAA TCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGA TTTATACGTTTACAT Aflv_1201 1199735 - 1199598 - | hypothetical protein Aflv_1202 1199930 - 1200751 + | Undecaprenyl pyrophosphate phosphatase TERM 1825 1200744 - 1200791 + T 91 -7.9 -5.25656 | opp_overlap 1200753 1200758, overlap 1200734 1200745 1200753 TTTATGTCGTTTATT TTGCATAAATAAAAGGCTCCT TTTCAC GGGAGCCTTTTATTCGTTCAG TTTTTTAATAATTTT TERM 1826 1200745 - 1200790 + T 76 -9.2 -3.72953 | opp_overlap 1200753 1200758, overlap 1200734 1200744 1200753 TTATGTCGTTTATTT TGCATAAATAAAAGGCTCCT TTTCAC GGGAGCCTTTTATTCGTTCA GTTTTTTAATAATTT TERM 1827 1200782 - 1200753 - T 86 -10.9 -3.86897 | opp_overlap 1200734 1200745 1200744 1200753, overlap 1200758 TTTATTTTGCATAAA TAAAAGGCTCC TTTTCACG GGAGCCTTTTA TTCGTTCAGTTTTTT TERM 1828 1200753 - 1200782 + T 88 -11.6 -3.47915 | opp_overlap 1200753 1200758, overlap 1200734 1200745 1200744 TTTATTTTGCATAAA TAAAAGGCTCCT TTTCAC GGGAGCCTTTTA TTCGTTCAGTTTTTT TERM 1829 1200777 - 1200758 - T 82 -6.4 -4.99043 | opp_overlap 1200734 1200753 1200745 1200744, overlap 1200753 TTTGCATAAATAAAA GGCTCC TTTTCACG GGAGCC TTTTATTCGTTCAGT maa 1201340 - 1200780 - | Maltose O-acetyltransferase TERM 1830 1202229 - 1202215 - g 90 -5.7 -5.4833 | opp_overlap 1202215, overlap 1202226 TCATTCAACAAAAAA TGCGT GAAAA ACGCA TTGATGCAGGGGATA Aflv_1204 1201488 - 1202630 + | Radical SAM superfamily enzyme TERM 1831 1202647 - 1202611 - f 100 -12.2 -5.5208 | opp_overlap 1202611 TGAGAAGAGAAAAAA CCCGAACGGTGTTCGC TTAAT GCGGACGCTGTTCGGG TTTTTTATGTTGGTT TERM 1832 1202611 - 1202647 + F 100 -18.8 -5.50925 | opp_overlap 1202611 TGAGAAGAGAAAAAA CCCGAACGGTGTTCGC TTAAT GCGGACGCTGTTCGGG TTTTTTATGTTGGTT TERM 1833 1203042 - 1203031 - g 78 -4.4 -5.10665 | overlap 1203032 AGGTAAGAAAGAAAA GCAT ACGC ATGC ATATGGGTTGTTGGA TERM 1834 1203216 - 1203238 + G 72 -7.8 -3.8186 | TTGTGAGCGGAATGG TTGATGAACA TAT TGTTCAGCAA TTGTTGCTTGAAATA TERM 1835 1203323 - 1203312 - g 85 -4.4 -5.49234 | ATATTGAACAAAAAA TAGC TACA GCTA ATACAACACGGCGCA TERM 1836 1203910 - 1203924 + G 78 -4.2 -5.13473 | overlap 1203911 TGCACGCTTTGATAT TGCGAC AGC GTTGCG TTTTTTACGTATGCT gerKA 1202945 - 1204585 + | Spore germination protein KA gerKC 1204713 - 1205777 + | Spore germination protein KC gerKB 1205795 - 1206907 + | Spore germination protein KB TERM 1837 1206918 - 1206895 - T 86 -7.4 -5.08878 | opp_overlap 1206898, overlap 1206898 AACAGATAAAGAAAA TAAGGGACGA TAAG TCGCCCCTTT TTAAAAATCAAAGTT TERM 1838 1206898 - 1206915 + T 79 -6.9 -4.59773 | opp_overlap 1206895 1206898 AGATAAAGAAAATAA GGGACGA TAAG TCGCCCC TTTTTAAAAATCAAA TERM 1839 1206915 - 1206898 - T 88 -9.1 -4.60302 | opp_overlap 1206898, overlap 1206895 AGATAAAGAAAATAA GGGACGA TAAG TCGCCCC TTTTTAAAAATCAAA Aflv_1208 1207725 - 1206919 - | Aldo/keto reductase TERM 1840 1207445 - 1207433 - G 72 -6.3 -4.40184 | TGAACTAAATACAAA TCGAT ATA ATCGA ACCCGAGTTTTTTTA Aflv_1209 1208550 - 1207834 - | Polysaccharide deacetylase Aflv_1210 1208648 - 1209526 + | Uncharacterized conserved protein, probably secreted sacA 1210122 - 1211612 + | Sucrase-6-phosphate hydrolase TERM 1841 1211615 - 1211636 + F 79 -5.1 -5.06414 | opp_overlap 1211615 TGAGCTAGTGTAAAA GAGGCGG GACAAAAA CCGTCTC TTTTTGTTACAAACG Aflv_1214 1211713 - 1212435 + | Uncharacterized membrane protein, possible permease TERM 1842 1212436 - 1212458 + F 71 -7 -3.99957 | opp_overlap 1212433 1212436 AAAGAAAAAACATAA TTGCCCAC CTTTGTC GTGGGCGA TTTATACATATTTGC TERM 1843 1212493 - 1212519 + F 86 -7.4 -5.02074 | overlap 1212494 CGCTTCGTTGAACCG TTTTTGCATGGT TTG GTCATGCAAAAG TTTTTTGGAAAATAA TERM 1844 1212494 - 1212518 + F 72 -8.7 -3.60762 | overlap 1212493 GCTTCGTTGAACCGT TTTTGCATGGT TTG GTCATGCAAAA GTTTTTTGGAAAATA TERM 1845 1212830 - 1212820 - f 70 -2.6 -5.06465 | opp_overlap 1212820 1212829 AAAAAAAAAAAAAGA TAAA ATT TTTA TTGTGAATATTGTGA Aflv_1215 1212849 - 1213508 + | hypothetical protein Aflv_1216 1213638 - 1213985 + | hypothetical protein TERM 1846 1214334 - 1214360 + F 100 -15.2 -4.76802 | opp_overlap 1214342, overlap 1214335 GGACTAATATATTTT TGCGAACAGTGC CTC GCGCTGTTCGCG TTTGTTATTTTTGGA TERM 1847 1214335 - 1214359 + F 100 -16.5 -3.44454 | opp_overlap 1214342, overlap 1214334 GACTAATATATTTTT GCGAACAGTGC CTC GCGCTGTTCGC GTTTGTTATTTTTGG TERM 1848 1214594 - 1214570 - f 83 -4.9 -5.2422 | opp_overlap 1214570 1214577 1214586 AAGGACAGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTACC TERM 1849 1216917 - 1216907 - f 78 -4 -5.31158 | TAAAAAAACGAAAAA CTAA AAA TTAG CACGGTTGTTGATTA TERM 1850 1217136 - 1217085 - f 95 -13.8 -3.32521 | overlap 1217098 ACGAGATTTTCAGAA TCCAGCGCCAATAGGGCATTTCCG GTAT CGAAAATGCCCTAAGAGGACTGGA GAATCGTTTGGAGAG TERM 1851 1217123 - 1217098 - f 95 -14.1 -3.0464 | overlap 1217085 AATCCAGCGCCAATA GGGCATTTCCG GTAT CGAAAATGCCC TAAGAGGACTGGAGA TERM 1852 1218321 - 1218309 - g 71 -9.1 -3.32807 | CGAAAACATTATGAA GCGCT TGA AGCGC ATTGAAGGACAAGTG Aflv_1217 1218232 - 1218543 + | Uncharacterized conserved protein, nickel resistance determinant TERM 1853 1220201 - 1220218 + G 71 -4.9 -4.58663 | gap 1, opp_overlap 1220187 AGCAAACGGAATGGT TGCG-CAA CCG TTGACGCA TTTTTCCGCGCTCGT TERM 1854 1220446 - 1220434 - g 73 -5.5 -4.67651 | ATACGGTAAAAGAAA GCTCC AAA GAAGC AATTCAAACATTAAA TERM 1855 1220940 - 1220921 - g 84 -10 -3.85817 | ATCGGTGGTGACAAA CGCGCTTC GTTT GAAACGCG TGAAAATATAAACAT Aflv_1218 1218540 - 1220951 + | Cation transport ATPase Aflv_1219 1220970 - 1221176 + | Copper-ion-binding protein TERM 1856 1221218 - 1221179 - f 73 -9.5 -3.14051 | gap 1, opp_overlap 1221186 1221211, overlap 1221177 1221186 TGATGTGGAGTAAGA GAGAAAAGGGTATCCCTC TGTCG AAGGGATGCCCTTTT-TC AGTAGCGAAAGGTTT TERM 1857 1221212 - 1221186 - f 88 -8.7 -4.6955 | opp_overlap 1221186 1221211, overlap 1221177 1221179 GAGTAAGAGAGAAAA GGGTATCCCTC TGTCG AAGGGATGCCC TTTTTCAGTAGCGAA TERM 1858 1221186 - 1221212 + F 91 -10.2 -4.65895 | opp_overlap 1221177 1221186 1221179, overlap 1221211 GAGTAAGAGAGAAAA GGGTATCCCT CTGTCGA AGGGATGCCC TTTTTCAGTAGCGAA TERM 1859 1221264 - 1221244 - f 79 -8.3 -4.07568 | opp_overlap 1221244 1221252, overlap 1221247 GGTTTTCTGTGAAAA TAACGGCTC CAT GAGCGGTTA TTTTCATGCCTAGGT TERM 1860 1221244 - 1221264 + F 82 -8.3 -4.28548 | opp_overlap 1221244 1221247, overlap 1221252 GGTTTTCTGTGAAAA TAACGGCTC CAT GAGCGGTTA TTTTCATGCCTAGGT TERM 1861 1221683 - 1221726 + F 100 -14.7 -4.84017 | TTGTTGGCTTATTCC CTGGTCGTGCTAGTTGAGC GCTGAG GCTCAACTAGCACCACGGG TTTTTGTAAACAGTT TERM 1862 1222266 - 1222313 + F 70 -9.7 -2.60615 | opp_overlap 1222252, overlap 1222263 1222267 ATCGCCTATTCTTAG GTGACTTGCCCACGGGGGAGG AGCGCC CCTCCCCCGTGGGTCGCAAAC ATATTTCACAAACAT TERM 1863 1222267 - 1222314 + F 72 -9.2 -3.34715 | gap 2, opp_overlap 1222252, overlap 1222266 1222263 TCGCCTATTCTTAGG TGACT-TG-CCCACGGGGGAGG AGCGCC CCTCCCCCGTGGGTCGCAAACA TATTTCACAAACATC TERM 1864 1223384 - 1223410 + F 77 -10.2 -3.28712 | opp_overlap 1223384, overlap 1223369 1223368 1223390 CTTTCCTCTTGAGAA GGGGAAGGGTTT ACC AAACCGTTCTCC TTCTCAAGAGGCCAC Aflv_1220 1223511 - 1223687 + | Copper-ion-binding protein TERM 1865 1223697 - 1223723 + T 84 -6.6 -4.95155 | opp_overlap 1223690 1223692 1223697 GAGTAAGAGAGAAAA GGGTATTCCT CTGTCGA AGGGATGCCC TTTTTGTAGTATCGA TERM 1866 1224029 - 1223986 - T 81 -5.5 -5.06414 | gap 2, opp_overlap 1223997 TTTTTGTAAGAAAAA TGTCC-A-AGCAAGAGACG CTCGCCTT CGTCTCTTGCTGTCGGCCA CGATTCTCACGAGTC TERM 1867 1224496 - 1224479 - T 73 -7.1 -4.04187 | overlap 1224463 1224486 CACTATAAAATACAA TGAAAGA GTGA TCTTTCA CGACTTAAGCTATTC TERM 1868 1224910 - 1224881 - T 79 -8.8 -3.98236 | gap 1 AAAGCCCAGCACAAA TAGGGCATT-TCT GTCAT AGAAAATGCCCTA CGTAGCGGAAAGAAC Aflv_1221 1226365 - 1224908 - | Transposase TERM 1869 1224962 - 1224974 + g 82 -3.3 -5.58074 | opp_overlap 1224955 1224962, overlap 1224971 CAACAGAAGACACAA CGAGT CCC ACACG TTTTTTTCGTGCTTG TERM 1870 1225494 - 1225506 + g 72 -7.7 -3.75884 | opp_overlap 1225493 TATTGTGGAAGAATC CCGAT TTC ATCGG TTGCTTTCTTTCCAC TERM 1871 1226442 - 1226412 - H 100 -6.3 -6.01187 | gap 1, opp_overlap 1226414 AAGGAAAGAAAAAAA TATTCAGCTCACTT TATG ATGTG-GCTGAATA GTTACCCTCATGCGC Aflv_1222 1226713 - 1227945 + | Predicted membrane protein TERM 1872 1228111 - 1228168 + F 70 -5.8 -4.39107 | gap 3, opp_overlap 1228128, overlap 1228122 1228126 1228128 GAGCAAGGGTATGAT GTGGAGTAAGGGAGAAAGGGTG-CCCACA CAA TGTTGGACACCC-T-CTTTCTTATTCCCC TTTATTCGTTGTGTT TERM 1873 1228122 - 1228159 + F 73 -8.5 -3.72593 | gap 1, opp_overlap 1228128, overlap 1228111 1228126 1228128 TGATGTGGAGTAAGG GAGAAAGGGTG-CCCACA CAA TGTTGGACACCCTCTTTC TTATTCCCCTTTATT TERM 1874 1228126 - 1228155 + F 70 -5.7 -4.4634 | gap 1, opp_overlap 1228128, overlap 1228122 1228111 1228128 GTGGAGTAAGGGAGA AAGGGTG-CCCACA CAA TGTTGGACACCCTC TTTCTTATTCCCCTT TERM 1875 1228153 - 1228128 - f 86 -10.5 -3.98826 | gap 1, opp_overlap 1228126 1228122 1228111 1228128 GGAGTAAGGGAGAAA GGGTGCCC-ACA CAA TGTTGGACACCC TCTTTCTTATTCCCC TERM 1876 1228128 - 1228153 + F 77 -8.3 -3.82963 | gap 1, opp_overlap 1228128, overlap 1228126 1228122 1228111 GGAGTAAGGGAGAAA GGGTG-CCCACA CAA TGTTGGACACCC TCTTTCTTATTCCCC TERM 1877 1228204 - 1228218 + F 72 -8.6 -3.50325 | overlap 1228203 1228200 GATCTGGGGTATAGT CCGATT TGT AATCGG TATATTTTACTTCTG TERM 1878 1228440 - 1228452 + F 71 -6.3 -4.16392 | overlap 1228419 GATGGACATCCATCG GTGAA TTG TTCAC TATTTTTACTTTTAC TERM 1879 1230045 - 1230027 - g 77 -4.6 -5.03747 | overlap 1230015 AAACGTTCCAAAAAA TGAACGAT CTG ATCACTCA TCGTGGTCCTGATGA asnB 1229951 - 1231843 + | Asparagine synthetase TERM 1880 1231860 - 1231885 + F 93 -6.9 -5.52096 | TGGTTAGTTATGTTC GGAGCTTCT TTTTCTCT AGGAGCTCC TTTTTTATTGCGTTT Aflv_1226 1231932 - 1232348 + | Uncharacterized membrane protein TERM 1881 1232372 - 1232346 - T 100 -9.6 -5.85425 | opp_overlap 1232346 GAAATAAAGAAAAAA TAGCTCTATG TTTCGTG CATAGAGCTA TTTGTCTGCGGCAAT TERM 1882 1232346 - 1232372 + T 86 -10.3 -4.03413 | opp_overlap 1232346 GAAATAAAGAAAAAA TAGCTCTATGT TTCGT GCATAGAGCTA TTTGTCTGCGGCAAT Aflv_1227 1233869 - 1232370 - | Amine oxidase TERM 1883 1232890 - 1232907 + g 100 -4 -6.23317 | opp_overlap 1232890 ATGTAAACTGTAAAC GCTCCC CAAGCC GGGCGC TTTTTTTCTTTTTCT TERM 1884 1234410 - 1234420 + G 73 -8.2 -3.65827 | opp_overlap 1234403 1234402 GCGAAAACGTCCGAA GCGG TTT CCGC TTTCGATAGACATTG TERM 1885 1234535 - 1234525 - g 70 -5.4 -4.49337 | TCACAATGTACAAAA CGTT GGG AACG TACGAGCGAACAAGA TERM 1886 1234754 - 1234766 + G 71 -3.3 -4.95758 | CGTACATAAAAGAGC TAGCG TGG CGCGA TTTTTATCATATGAT Aflv_1228 1233916 - 1235322 + | Deoxyribodipyrimidine photolyase TERM 1887 1235324 - 1235357 + F 93 -8.3 -5.20534 | opp_overlap 1235333, overlap 1235326 GGATGAATGAGTGAG TATAAAAGTCCGCTT CATG AAGTGGGCTTTTATC TTTTTCTTCATTAGT TERM 1888 1235326 - 1235355 + F 90 -10.9 -4.21997 | opp_overlap 1235333, overlap 1235324 ATGAATGAGTGAGTA TAAAAGTCCGCTT CATG AAGTGGGCTTTTA TCTTTTTCTTCATTA aldY 1235442 - 1236911 + | NAD-dependent aldehyde dehydrogenase TERM 1889 1237121 - 1237160 + G 88 -9.6 -4.29977 | gap 1, opp_overlap 1237130, overlap 1237124 GTGTTTTTTGATTTA CAT-GCTAAAGGAGTTG TCTTGCC TAACTCCTTTAGCTATG TTTGTTCGGTTATTT TERM 1890 1237124 - 1237156 + G 89 -11.5 -3.43412 | opp_overlap 1237130, overlap 1237121 TTTTTTGATTTACAT GCTAAAGGAGTTG TCTTGCC TAACTCCTTTAGC TATGTTTGTTCGGTT Aflv_1230 1236992 - 1237183 + | hypothetical protein Aflv_1231 1237631 - 1237170 - | AraC-type DNA-binding domain-containing protein Aflv_1232 1237747 - 1238142 + | Predicted membrane protein Aflv_1233 1238228 - 1239595 + | Methyl-accepting chemotaxis protein TERM 1891 1239597 - 1239638 + T 74 -8.9 -3.53031 | gap 1, opp_overlap 1239603 1239607, overlap 1239596 1239600 1239601 1239603 ATTTGTCTATGTAGT CACACAGTAAGCCAGTTG CGCTTAT CAGCTGGCTTACTG-GTA TTGATTTAACGTAGC TERM 1892 1239600 - 1239636 + T 86 -11.7 -3.33865 | opp_overlap 1239603 1239607, overlap 1239597 1239596 1239601 1239603 TGTCTATGTAGTCAC ACAGTAAGCCAGTTG CGCTTAT CAGCTGGCTTACTGG TATTGATTTAACGTA TERM 1893 1239601 - 1239635 + T 95 -15.2 -2.59837 | opp_overlap 1239603 1239607, overlap 1239600 1239597 1239596 1239603 GTCTATGTAGTCACA CAGTAAGCCAGTTG CGCTTAT CAGCTGGCTTACTG GTATTGATTTAACGT TERM 1894 1239633 - 1239603 - T 71 -9.8 -2.91912 | opp_overlap 1239601 1239600 1239597 1239596 1239603, overlap 1239607 CTATGTAGTCACACA GTAAGCCAGTTG CGCTTAT CAGCTGGCTTAC TGGTATTGATTTAAC TERM 1895 1239603 - 1239633 + T 81 -12 -2.83396 | opp_overlap 1239603 1239607, overlap 1239601 1239600 1239597 1239596 CTATGTAGTCACACA GTAAGCCAGTTG CGCTTAT CAGCTGGCTTAC TGGTATTGATTTAAC gltC 1240538 - 1239630 - | Transcriptional regulator (LysR family) TERM 1896 1239978 - 1239992 + g 71 -5 -4.67353 | overlap 1239973 ATGTCGTAATTCGCT TAAAGC GAT GCTTTG TTTTTGACTGAGTGG TERM 1897 1242094 - 1242072 - g 71 -4.8 -4.62085 | overlap 1242075 ACGTGGAAAAAACAA TCATTCCGAT GGC AACGGAAGGA AAAGATCCAACGGGG gltA 1240649 - 1245193 + | Glutamate synthase (large subunit) gltB 1245227 - 1246687 + | Glutamate synthase (small subunit) Aflv_1237 1246744 - 1247112 + | hypothetical protein TERM 1898 1247128 - 1247159 + F 100 -7.4 -6.20267 | overlap 1247122 1247129 ATAAACATGTTGGAT CCCTTTGATCTAAT CGTT AGTAGATCAAAGGA TTTTTTTATTTTTGG TERM 1899 1247129 - 1247158 + F 90 -10.9 -4.285 | overlap 1247122 1247128 TAAACATGTTGGATC CCTTTGATCTAAT CGTT AGTAGATCAAAGG ATTTTTTTATTTTTG TERM 1900 1248247 - 1248235 - g 95 -7.7 -5.03145 | opp_overlap 1248235 1248234 GAACTGTCGAAAAAA GAAGG CAC CCTTC ATTTAGATGCATTGA ilvD 1247197 - 1248909 + | Dihydroxyacid dehydratase/phosphogluconate dehydratase Aflv_1239 1248979 - 1249320 + | hypothetical protein TERM 1901 1249354 - 1249304 - T 100 -9.4 -5.4756 | gap 2, opp_overlap 1249318 1249346 1249348, overlap 1249308 1249318 AACTCGAAGAAAAAA TGCATGCAGAAAAATAGAAGGTGC CGAGC GCACCTTCTATTTTTCTTC-C-CA AGCTGGAAGCATTTT TERM 1902 1249352 - 1249308 - T 100 -16 -2.99438 | opp_overlap 1249318 1249346 1249348, overlap 1249304 1249318 CGAAGAAAAAATGCA TGCAGAAAAATAGAAGGTGC CGAGC GCACCTTCTATTTTTCTTCC CAAGCTGGAAGCATT TERM 1903 1249342 - 1249318 - T 100 -13 -4.88067 | opp_overlap 1249318, overlap 1249308 1249304 ATGCATGCAGAAAAA TAGAAGGTGC CGAGC GCACCTTCTA TTTTTCTTCCCAAGC TERM 1904 1249318 - 1249342 + T 100 -13 -5.06414 | opp_overlap 1249308 1249304 1249318 ATGCATGCAGAAAAA TAGAAGGTGC CGAGC GCACCTTCTA TTTTTCTTCCCAAGC acdA 1250551 - 1249340 - | Acyl-CoA dehydrogenase TERM 1905 1250134 - 1250154 + gT 74 -9.7 -3.14132 | opp_overlap 1250134 1250133 1250131 AAATAGCAGCAACAT CTGAGCCAG CGT TTGGCTCGG TTAATCCGAACGCAC Aflv_1241 1251806 - 1250520 - | Predicted acyl-CoA transferase TERM 1906 1251743 - 1251706 - GH 91 -6.4 -5.4505 | gap 1 TTTTGTAATAAAAAA GCCAGT-CCCTCCCT CAAACGTAC AGGAAAGGAACTGGC ATAAACGATCCGAGC TERM 1907 1251886 - 1251898 + H 87 -3.5 -5.79595 | opp_overlap 1251897 ATAAAACAACACATT TATTT TGT AAATA TTTTTTATTTTAAAA TERM 1908 1252018 - 1252057 + H 100 -19.6 -5.38054 | opp_overlap 1252015 1252012 AACGCATAAGCACCA GCCAGTTTAGTCATTGTG TCAT CACGATGATTAAACTGGC TTTTTATTTGTCGAA TERM 1909 1252179 - 1252201 + G 71 -9.2 -2.9348 | opp_overlap 1252172 1252179 1252176 CAAAAGGAGCAATGA TTCGCGAC ATAGATG GTCGCGAA TATATCGACTTTGCG TERM 1910 1252201 - 1252179 - g 70 -9.2 -2.84344 | opp_overlap 1252179, overlap 1252172 1252176 CAAAAGGAGCAATGA TTCGCGAC ATAGATG GTCGCGAA TATATCGACTTTGCG gabT 1252082 - 1253386 + | 4-aminobutyrate aminotransferase-like aminotransferase Aflv_1243 1253383 - 1254828 + | NAD-dependent aldehyde dehydrogenase TERM 1911 1256114 - 1256128 + GF 71 -7.2 -3.90318 | overlap 1256110 CAGCTTGTCTGGCCG TATGAG TGG CTCATA TTTATCGGATGGTGG Aflv_1244 1254773 - 1256218 + | Amino acid transporter TERM 1912 1256218 - 1256237 + F 93 -7.8 -5.38054 | opp_overlap 1256203 TGTACATCGGATGTA GAGGGGCG AATA TGCTCCTC TTTTTGTTTGTGAGG ilvB 1256308 - 1257933 + | Acetolactate synthase (acetohydroxy-acid synthase) (large subunit) Aflv_1246 1257930 - 1259405 + | NAD-dependent aldehyde dehydrogenase TERM 1913 1260303 - 1260292 - gf 90 -5.8 -5.48213 | opp_overlap 1260292 GATTTAAAAGAAAAA GACG ATGT CGTC TTATTGCGCGTAATT Aflv_1247 1259275 - 1260567 + | Saccharopine dehydrogenase (NADP+, L-glutamate-forming) TERM 1914 1260668 - 1260682 + G 73 -8.6 -3.65991 | opp_overlap 1260665 1260667, overlap 1260665 TGGAGGTGAACATAT GCTACA TAT TGTAGC TTGTATTAAGCAAGT etfB 1260666 - 1261478 + | Electron transfer flavoprotein, beta subunit etfA 1261491 - 1262540 + | Electron transfer flavoprotein, alpha subunit TERM 1915 1263637 - 1263625 - g 73 -5.5 -4.64992 | opp_overlap 1263625 TTGAAAAAATATAAA GACGC AAC GCATC ATTTTGAGTCGTTTC Aflv_1250 1262533 - 1263828 + | Dehydrogenase (flavoprotein) Aflv_1251 1263810 - 1264112 + | Ferredoxin-like protein TERM 1916 1264303 - 1264323 + F 100 -8.3 -5.85425 | TTCTTCTCATGTGAG CCACCCT TTATCGT AGGGTGG TTTTTTGTTTCTTTA Aflv_1252 1264842 - 1265144 + | Predicted membrane protein TERM 1917 1265159 - 1265176 + F 100 -9.1 -5.85425 | GCTTCATTATTTCTA CCATCCC ATCT GGGGTGG TTTTTTGTTTCTTTG TERM 1918 1265249 - 1265262 + G 76 -2.5 -5.26875 | overlap 1265240 TTTTTTTTTTATGAT TATTT CGTA AAATA TTTTTTCGTTAGGAG Aflv_1253 1265189 - 1265650 + | hypothetical protein Aflv_1254 1266045 - 1266239 + | hypothetical protein TERM 1919 1266244 - 1266292 + T 100 -22.8 -3.55203 | opp_overlap 1266244 1266247 1266250 1266255, overlap 1266247 1266279 GGCGTTTTTAGTGAA CAACAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCGTTG TTTGCAACCCCTTTT TERM 1920 1266292 - 1266244 - T 100 -22.8 -3.05384 | opp_overlap 1266244 1266247 1266279, overlap 1266247 1266250 1266255 GGCGTTTTTAGTGAA CAACAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCGTTG TTTGCAACCCCTTTT TERM 1921 1266289 - 1266247 - T 100 -18.7 -3.67597 | opp_overlap 1266247 1266244 1266279, overlap 1266244 1266250 1266255 GTTTTTAGTGAACAA CAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCG TTGTTTGCAACCCCT TERM 1922 1266247 - 1266289 + T 100 -18.7 -3.90922 | opp_overlap 1266244 1266247 1266250 1266255, overlap 1266244 1266279 GTTTTTAGTGAACAA CAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCG TTGTTTGCAACCCCT Aflv_1255 1266381 - 1266223 - | hypothetical protein TERM 1923 1266286 - 1266250 - G 100 -16.8 -3.97307 | opp_overlap 1266247 1266244 1266279, overlap 1266247 1266244 1266255 TTTAGTGAACAACAA TGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCA TCGTTGTTTGCAACC TERM 1924 1266281 - 1266255 - G 93 -10.9 -4.14945 | opp_overlap 1266247 1266244 1266279, overlap 1266250 1266247 1266244 TGAACAACAATGAAA CCCATGATGCT AGTTG AGCGTCATGGG TTTCATCGTTGTTTG Aflv_1256 1266440 - 1267018 + | Transcriptional regulator, TetR/AcrR family Aflv_1257 1267156 - 1267905 + | Alpha/beta hydrolase superfamily protein TERM 1925 1267942 - 1267928 - f 82 -8.6 -4.16284 | opp_overlap 1267928 1267927 1267930, overlap 1267931 ATACTGCTCAATAAA GACTGA CGG TCAGTC ATTTAACTTATGACA Aflv_1258 1267997 - 1269193 + | Membrane protein TERM 1926 1269312 - 1269329 + F 100 -9.1 -5.85425 | CATTCAACATTTCCA CCATCCC ATAT GGGGTGG TTTTTTATTTCTTTA TERM 1927 1269392 - 1269405 + F 75 -2.5 -5.26875 | overlap 1269383 TATTTTTTTTATGAT TATTT CGTA AAATA TTTTTTCGTTAGGAG Aflv_1259 1269428 - 1269793 + | hypothetical protein Aflv_1260 1270188 - 1270382 + | hypothetical protein TERM 1928 1270387 - 1270436 + F 83 -11 -3.64103 | gap 1, opp_overlap 1270398, overlap 1270387 1270391 1270398 GGCGTTTTTAGTGAA CAACAATG-AAACCCATGATGCT AGTTG AGCGTCATGGGTTAATGTTGTTG TTTGCAGTATGAGTA TERM 1929 1270387 - 1270433 + F 71 -7.6 -3.95378 | gap 2, opp_overlap 1270398, overlap 1270387 1270391 1270398 GGCGTTTTTAGTGAA CAACAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTA-AT-GTTG TTGTTTGCAGTATGA TERM 1930 1270398 - 1270424 + F 95 -13.1 -3.51206 | opp_overlap 1270398, overlap 1270391 1270387 1270387 TGAACAACAATGAAA CCCATGATGCT AGTTG AGCGTCATGGG TTAATGTTGTTGTTT TERM 1931 1270424 - 1270398 - f 90 -10.9 -4.14945 | opp_overlap 1270398 1270391 1270387 1270387 TGAACAACAATGAAA CCCATGATGCT AGTTG AGCGTCATGGG TTAATGTTGTTGTTT TERM 1932 1271129 - 1271113 - g 90 -11.5 -3.64599 | GGACTATATGTGAAA CGGCAGC GAA GCCGCCG AAGAGGAAAGGAAGA Aflv_1261 1270525 - 1271955 + | Transposase TERM 1933 1272120 - 1272098 - f 78 -2.8 -5.40474 | opp_overlap 1272098 1272100 1272112, overlap 1272100 1272112 ATCTTTTTAAAAAAA CATATTGACA AAA TGTTAATATA ATTTTAAATTTAAAT TERM 1934 1272464 - 1272452 - f 70 -3.3 -4.93968 | opp_overlap 1272463, overlap 1272453 ACGCAGAATGAAAAA TGCCA ACA TGGCG AAACGAATGGCAGCG TERM 1935 1273610 - 1273594 - g 73 -5.1 -4.6955 | opp_overlap 1273594, overlap 1273595 TACGAATATACAAAA TCTGCAA CTC TTGCAGC AATTGTCGCATTGGT TERM 1936 1273609 - 1273595 - g 71 -8.6 -3.40645 | opp_overlap 1273594, overlap 1273594 ACGAATATACAAAAT CTGCAA CTC TTGCAG CAATTGTCGCATTGG Aflv_1262 1273474 - 1274703 + | Permease of the major facilitator superfamily Aflv_1263 1275899 - 1274877 - | Transposase TERM 1937 1276396 - 1276413 + H 100 -9.1 -5.59534 | opp_overlap 1276369 CATTCAAAATTTCCA CCATCCC ATAT GGGGTGG TTTTTTGTTATACTT TERM 1938 1276711 - 1276691 - g 71 -8.9 -3.40403 | opp_overlap 1276698 GTTTCCGGACTATAA GGCGAATCG TGG CGAGCCGCC GCATGAATTAATTCC Aflv_1264 1276461 - 1277294 + | 5'-3' exonuclease (including N-terminal domain of PolI) TERM 1939 1277750 - 1277740 - g 71 -6.8 -4.09511 | AATATGTTTGCAAAA CCAC AAG GTGG ACGAATTATTATGAT Aflv_1265 1277308 - 1278084 + | Dehydrogenase TERM 1940 1278265 - 1278291 + T 77 -9.5 -3.59966 | gap 1, opp_overlap 1278271, overlap 1278268 TTTCAAAAGAGATTT TAACCAGCC-CC ACGC GGAGGCTGGTTG TTGTATATGCGCTAT TERM 1941 1278268 - 1278288 + T 79 -9 -3.92996 | gap 1, opp_overlap 1278271, overlap 1278265 CAAAAGAGATTTTAA CCAGCC-CC ACGC GGAGGCTGG TTGTTGTATATGCGC Aflv_1266 1279325 - 1278303 - | ABC-type Fe3+-siderophore achromobactin transport system, periplasmic component Aflv_1267 1279421 - 1280455 + | ABC-type Fe3+-siderophore achromobactin transport system, permease component TERM 1942 1280943 - 1280931 - g 100 -10.5 -4.58395 | opp_overlap 1280930 1280931 GCTAGCTTGGAAAAA CGGGG TGT CCCCG ATTCGTCTCGTCTTG TERM 1943 1280931 - 1280943 + G 74 -10.5 -2.59154 | opp_overlap 1280931, overlap 1280930 GCTAGCTTGGAAAAA CGGGG TGT CCCCG ATTCGTCTCGTCTTG TERM 1944 1281345 - 1281359 + G 73 -7.1 -4.15222 | overlap 1281341 TTCTTTTGGAGGGAT GCTGC CAATA GCAGC TTTGTTAGGCGGCAT Aflv_1268 1280452 - 1281504 + | ABC-type Fe3+-siderophore achromobactin transport system, permease component TERM 1945 1281982 - 1281948 - g 72 -10.1 -2.82516 | gap 1 TCTCTCAGGAGGACA GCGCCAACGTGCATGG ATTG CGATG-ACATTGGCGC AACATACGGAAGTCA Aflv_1269 1281517 - 1282329 + | ABC-type Fe3+-siderophore achromobactin transport system, ATPase component TERM 1946 1282979 - 1282992 + G 81 -5.3 -5.24129 | opp_overlap 1282979 AAGTCGTATTCAAAG GACAA CGTG TTGTC TTTTTTATCAAACAA Aflv_1270 1282326 - 1283045 + | Uncharacterized Fe-S protein TERM 1947 1283081 - 1283061 - T 89 -10.4 -4.30396 | opp_overlap 1283061 AATGAAATAGAGAAA CCAGCCCC ACGCG GAGGCTGG TTGTTATTTTCGCAC TERM 1948 1283061 - 1283081 + T 85 -9 -4.20868 | gap 1, opp_overlap 1283061 AATGAAATAGAGAAA CCAGCC-CC ACGC GGAGGCTGG TTGTTATTTTCGCAC proA 1284326 - 1283085 - | Gamma-glutamyl phosphate reductase TERM 1949 1283594 - 1283611 + g 74 -4.1 -4.96501 | GTAGTTTCGCATTGA TGACGAT ATCG ATCGCCA TTTCTTTTTGTGCGG TERM 1950 1284231 - 1284246 + g 100 -4.6 -5.94214 | TAACGCTTCTGCAAT CATCGC GAGC GCGTTG TTTTTTTCTTCTGTT proB 1285484 - 1284348 - | Glutamate 5-kinase TERM 1951 1284495 - 1284509 + g 71 -4.2 -4.8622 | overlap 1284496 ATATACTTGCCCTCT AGCGAT TAC ATCGCC TTTTTGATTGACGAC TERM 1952 1285398 - 1285410 + g 88 -3.3 -5.82172 | GCGTAGTTTTTGTTC CGAGA GTG TCCCG TTTTTTTCTGTTAAT TERM 1953 1285531 - 1285496 - R 100 -12.7 -6.20267 | opp_overlap 1285496, overlap 1285522 CCAAAAATAAAAAAA CGCTTCTTCGTCCTT ATAAAA AAGGACGGAAAAGCG TTGTTTCCGCGGTAC TERM 1954 1285496 - 1285531 + r 93 -12.7 -3.91716 | opp_overlap 1285496 1285522 CCAAAAATAAAAAAA CGCTTCTTCGTCCTT ATAAAA AAGGACGGAAAAGCG TTGTTTCCGCGGTAC Aflv_1273 1286275 - 1285775 - | hypothetical protein Aflv_1274 1286419 - 1287327 + | ABC-type Na+ efflux pump, ATPase component TERM 1955 1287584 - 1287554 - g 73 -2.6 -5.24515 | AATAAAGAAATAAAA CTTGTTCGCCAC AATGAAA ATGAAGAACAAG CGAAAAAATATGTTC Aflv_1275 1287311 - 1288549 + | ABC-type Na+ efflux pump, permease component TERM 1956 1288574 - 1288548 - T 71 -9.5 -2.89941 | opp_overlap 1288553, overlap 1288553 AATTAACGAAAAGAT GAAAACCGAGC GGGTG GCTCGGTTTTT TACATTGGTTTTGTT TERM 1957 1288569 - 1288553 - T 91 -9.4 -4.56729 | opp_overlap 1288553, overlap 1288548 ACGAAAAGATGAAAA CCGAGC GGGTG GCTCGG TTTTTTACATTGGTT TERM 1958 1288553 - 1288569 + T 100 -9.4 -5.1848 | opp_overlap 1288553 1288548 ACGAAAAGATGAAAA CCGAGC GGGTG GCTCGG TTTTTTACATTGGTT Aflv_1276 1289044 - 1288574 - | Uncharacterized conserved secreted protein, contains metal-binding cluster Aflv_1277 1289045 - 1291078 + | Jag family RNA-binding domain fused to uncharacterized conserved protein TERM 1959 1291072 - 1291119 + F 91 -8 -5.24989 | gap 1, opp_overlap 1291082 1291084 TCAAGAAATTGTATT TGGATAAAAAGGCGCAGTGGC AATAAAG GCCA-TGCGTCTTTTTATATA TTTTTTCATCTATAC TERM 1960 1291109 - 1291082 - f 70 -3.4 -4.84359 | gap 1, opp_overlap 1291072, overlap 1291084 GTATTTGGATAAAAA GGCGCAGTGGC AATAAAG GCCA-TGCGTC TTTTTATATATTTTT TERM 1961 1293047 - 1293037 - g 71 -3.2 -4.96468 | TAAACGGAAAGAAAA TGGA AAT CCCA ATTCGCAAACTTTTA acsA 1291194 - 1293170 + | Acetoacetyl-coenzyme A synthetase (Acetoacetate--CoA ligase 1) TERM 1962 1293201 - 1293172 - f 79 -11.5 -2.65091 | opp_overlap 1293175, overlap 1293175 ATTCGAATGTATAAG CAAGGCTGTTGCC GTTT GGTAACAGCCTTA GTGGTGTACGCTGCT TERM 1963 1293175 - 1293198 + F 91 -13.2 -3.24925 | opp_overlap 1293175 1293172 CGAATGTATAAGCAA GGCTGTTGCC GTTT GGTAACAGCC TTAGTGGTGTACGCT TERM 1964 1293198 - 1293175 - f 82 -11 -3.47403 | opp_overlap 1293175, overlap 1293172 CGAATGTATAAGCAA GGCTGTTGCC GTTT GGTAACAGCC TTAGTGGTGTACGCT Aflv_1279 1293278 - 1293673 + | Transcriptional regulator (mercuric resistance operon regulatory protein) TERM 1965 1293737 - 1293748 + G 70 -5.8 -4.30719 | TAGCACTCATTGATG GCGA TGTG TCGC TTTCTTATCGAGAAG TERM 1966 1294800 - 1294787 - g 71 -2.3 -5.2112 | AAGACGAGGAAAAAA CAGCG GAAA CGGTG AAAAACGGTTGGCTA Aflv_1280 1293670 - 1295199 + | Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) TERM 1967 1296675 - 1296657 - g 82 -3.1 -5.44721 | opp_overlap 1296661 1296663 1296664 ATCACGCCAAAAAAA TCGCCAA TCGCC TTTGCGA CTTGTATTTGAGCGT Aflv_1281 1295177 - 1296847 + | Acyl-CoA dehydrogenase TERM 1968 1296851 - 1296877 + TF 100 -14.5 -3.40403 | opp_overlap 1296851 GTAGAAGTATAAAAA GGCAAGGGACC AAGTC GGTTCCTTGCC TTATAGTAAAACAAA TERM 1969 1296877 - 1296851 - Tf 100 -13 -5.01535 | opp_overlap 1296851 GTAGAAGTATAAAAA GGCAAGGGACCA AGT CGGTTCCTTGCC TTATAGTAAAACAAA Aflv_1282 1297531 - 1296878 - | Predicted membrane protein, hemolysin III TERM 1970 1296993 - 1296982 - Gf 71 -2.2 -5.1287 | GCCATACGTAAAAAA CAGC GCCG ACTG TGTACAAAACTCCGC TERM 1971 1297677 - 1297666 - gR 86 -2.2 -5.88197 | CGAAAGACAAAAAAA TGGC TTGT ACCA TCGTTTATTGGTGTG Aflv_1283 1297531 - 1298553 + | Hydrolase of the alpha/beta superfamily TERM 1972 1298546 - 1298604 + Tr 81 -5.4 -5.04385 | gap 1, opp_overlap 1298556, overlap 1298551 1298556 TTCTAGAAAAAGTGC AAAAATAAAAGGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCCTTCAGTTTGC TTTTTTGAGCATGTG TERM 1973 1298551 - 1298599 + Tr 90 -9.7 -4.42765 | gap 1, opp_overlap 1298556, overlap 1298546 1298556 GAAAAAGTGCAAAAA TAAAAGGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCCTTCAG TTTGCTTTTTTGAGC TERM 1974 1298556 - 1298594 + Tr 100 -16.2 -3.38096 | gap 1, opp_overlap 1298556, overlap 1298551 1298546 AGTGCAAAAATAAAA GGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCC TTCAGTTTGCTTTTT TERM 1975 1298594 - 1298556 - TR 100 -14 -5.27023 | gap 1, opp_overlap 1298551 1298546 1298556 AGTGCAAAAATAAAA GGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCC TTCAGTTTGCTTTTT Aflv_1284 1299054 - 1298596 - | hypothetical protein TERM 1976 1299152 - 1299175 + r 78 -2.5 -5.4492 | opp_overlap 1299155, overlap 1299155 GCCGTCATCTTATCA TAATTTGTC AAAATG GACAAACTA TTTTTTATATATGTG Aflv_1285 1299806 - 1299201 - | Stand-alone sensor domain protein TERM 1977 1299559 - 1299571 + g 77 -6.3 -4.69664 | TCGAATGTACTCGCA GCAAA GTC TTTGC TTTTTAACTGATATA TERM 1978 1299886 - 1299870 - R 100 -7.2 -6.01187 | opp_overlap 1299870 AATGAAATAAAAAAA GGGCGA GATGG CCGCCC TTTTGCGTTAAAAAA TERM 1979 1299870 - 1299886 + r 71 -6.5 -4.27316 | opp_overlap 1299870 AATGAAATAAAAAAA GGGCG AGATGGC CGCCC TTTTGCGTTAAAAAA Aflv_1286 1301264 - 1299894 - | hypothetical protein TERM 1980 1301868 - 1301885 + G 70 -7.1 -3.7557 | opp_overlap 1301868, overlap 1301866 AATAGACATCACAGA GAAAATG AACA CATTTTC TGTTTCATTTTTAAA Aflv_1287 1301608 - 1302594 + | hypothetical protein TERM 1981 1302633 - 1302591 - T 77 -11 -2.8028 | gap 1, opp_overlap 1302600, overlap 1302600 AAAAGGAAGAGATTA TTA-AAAAAAGCGACAAAG GGTTAT CCTTGTCGCTTTTTTGTAA CGATATAATACACTG TERM 1982 1302623 - 1302600 - T 100 -8.9 -5.56568 | opp_overlap 1302600, overlap 1302591 AGATTATTAAAAAAA GCGACAAAG GGTTAT CCTTGTCGC TTTTTTGTAACGATA TERM 1983 1302600 - 1302623 + T 91 -8.2 -5.252 | gap 1, opp_overlap 1302591 1302600 AGATTATTAAAAAAA GCGACAAAGGG TTA TCCT-TGTCGC TTTTTTGTAACGATA Aflv_1288 1303930 - 1302611 - | Amino acid transporter TERM 1984 1304060 - 1304071 + H 70 -3 -5.10029 | overlap 1304059 ATAAAATTAAATTTG GTTT AAAG AAAC TTTTTTAACCTTAAT mntA 1304258 - 1305133 + | ABC-type Mn2+ transport system, periplasmic component/surface adhesin mntB 1305130 - 1305870 + | ABC-type Mn2+ transport system, ATPase component mntC 1305982 - 1306776 + | ABC-type Mn2+ transport system, permease component mntD 1306773 - 1307642 + | ABC-type Mn2+ transport system, permease component TERM 1985 1307650 - 1307631 - T 93 -7.9 -5.4477 | opp_overlap 1307631 AAATGGCTAAAAAAA TCTCCTG TCTAGG CAGGAGA TTTAGTCTTTTATTG TERM 1986 1307631 - 1307650 + T 79 -8.6 -4.13368 | opp_overlap 1307631 AAATGGCTAAAAAAA TCTCCTGT CTAG GCAGGAGA TTTAGTCTTTTATTG Aflv_1293 1307789 - 1307652 - | hypothetical protein TERM 1987 1308194 - 1308211 + G 100 -8.5 -5.26247 | CAATTCTCCGTTATT CTCATCA CCGT TGATGAG TTTTATTTGTTTTGC Aflv_1294 1307883 - 1309145 + | Permease of the major facilitator superfamily TERM 1988 1309240 - 1309275 + F 70 -2.7 -5.1471 | CGTTATCGTTGACAA GGC-GCACACCGTGATG TACA TAT-ATGGTGTGTAGCC TTTCTTTTTTCTCAT Aflv_1295 1309330 - 1309983 + | Uncharacterized conserved domain protein TERM 1989 1310006 - 1309986 - f 70 -5.4 -4.42238 | opp_overlap 1309986 1309994, overlap 1309989 1309998 CGATTCGAACTAAAA GATGCAAC GACAT GTTGCGTC TTTTTTTGTCAAAGT TERM 1990 1309986 - 1310006 + F 100 -8.3 -5.61596 | opp_overlap 1309986 1309989 1309998, overlap 1309994 CGATTCGAACTAAAA GATGCAACG ACA TGTTGCGTC TTTTTTTGTCAAAGT xpaC 1310120 - 1310779 + | 5-bromo-4-chloroindolyl phosphate hydrolysis protein TERM 1991 1311715 - 1311703 - g 71 -4.9 -4.70879 | CGGAAATGTTAAAAA TCAAT ACG ATTGA AGCAGCAAAAGAAAA Aflv_1297 1310763 - 1311914 + | Uncharacterized protein involved in tellurite resistance TERM 1992 1311904 - 1311923 + F 93 -5.7 -5.61689 | opp_overlap 1311904 1311906 TGCTTACACTAAAAA GGGCTGA ATAAAA TCAGCTC TTTTTTATTGATTTT Aflv_1298 1311981 - 1312334 + | Rhodanese-related sulfurtransferase TERM 1993 1313726 - 1313708 - g 70 -7.4 -3.7574 | opp_overlap 1313708, overlap 1313706 TTCATCAGCAAAAGA TCCAGTCA ATA TGGCTGGA TATGTAGCATCGAAC TERM 1994 1313708 - 1313726 + G 70 -9.6 -2.89564 | opp_overlap 1313706 1313708 TTCATCAGCAAAAGA TCCAGTCA ATA TGGCTGGA TATGTAGCATCGAAC Aflv_1299 1312407 - 1314047 + | NAD(FAD)-dependent dehydrogenase fused to Rhodanese-like domain Aflv_1300 1314053 - 1314355 + | Rhodanese-related sulfurtransferase TERM 1995 1314353 - 1314377 + F 100 -10.1 -5.35222 | opp_overlap 1314356 GAAGGAGAAGTGGAA TAAGACTGGTG ATA TGCCAGTCTTA TTTTTTATGCATTTT TERM 1996 1314679 - 1314664 - g 82 -3.3 -5.51402 | opp_overlap 1314678 ACATATGCAAAAAAA CGTAT TCTTTT ATACG CCGGAATCGGTCGTG Aflv_1301 1314454 - 1315647 + | Permease of the major facilitator superfamily TERM 1997 1315659 - 1315633 - T 73 -6.6 -4.16279 | GAGAGCATGTTAAAA GGCGAAGG GGTATAAAATT CCTTCGCC TTAACCAATAATAAT Aflv_1302 1317003 - 1315660 - | Trk-type K+ transport system, membrane component TERM 1998 1316553 - 1316527 - G 73 -3.6 -5.03145 | overlap 1316512 GAAGCCTTGAAAAAA CGCTTCCTTCCA CGA TGGGAAGTAACG GAGAAAATATATACC TERM 1999 1317106 - 1317117 + H 88 -3 -5.89921 | opp_overlap 1317096, overlap 1317096 AAATATTTGTATTTA CAAA ATTT TTTG TTTTTTTATTATAAT Aflv_1303 1317182 - 1317319 + | hypothetical protein TERM 2000 1317311 - 1317330 + F 80 -4.3 -5.26158 | opp_overlap 1317299 CGAGAAATGGCTTCC CCTTCAT GAAAAA ATGGAGG TTTATTTTTTGTTTA tlpC 1317381 - 1319078 + | Methyl-accepting chemotaxis protein TERM 2001 1319098 - 1319080 - T 100 -13.2 -3.89822 | opp_overlap 1319073, overlap 1319063 GATTTATCGTATAAA GCGACAGA CGA TCTGTCGC TTCAAAGTGTTGAAA TERM 2002 1319125 - 1319161 + T 100 -9.7 -5.47846 | opp_overlap 1319128 1319134, overlap 1319128 1319134 GAAAAAGTGGGGAGT CAAGAAAAAGTTCAC TTTCCTC GTGAACTTTTTCTTC TTTTCTTTTTTCCTT TERM 2003 1319128 - 1319158 + T 95 -11.4 -4.75934 | opp_overlap 1319128 1319134, overlap 1319125 1319134 AAAGTGGGGAGTCAA GAAAAAGTTCAC TTTCCTC GTGAACTTTTTC TTCTTTTCTTTTTTC TERM 2004 1319158 - 1319128 - T 81 -11.4 -3.06312 | opp_overlap 1319125 1319128 1319134, overlap 1319134 AAAGTGGGGAGTCAA GAAAAAGTTCAC TTTCCTC GTGAACTTTTTC TTCTTTTCTTTTTTC TERM 2005 1319152 - 1319134 - T 76 -4.6 -5.10461 | opp_overlap 1319128 1319125 1319134, overlap 1319128 GGGAGTCAAGAAAAA GTTCAC TTTCCTC GTGAAC TTTTTCTTCTTTTCT TERM 2006 1319134 - 1319152 + T 86 -4.6 -5.47964 | opp_overlap 1319134 1319128, overlap 1319128 1319125 GGGAGTCAAGAAAAA GTTCAC TTTCCTC GTGAAC TTTTTCTTCTTTTCT Aflv_1305 1320536 - 1319175 - | Transposase TERM 2007 1319285 - 1319324 + gT 89 -10.1 -4.13995 | gap 1, overlap 1319288 GAATCTGTACGTATG GAACTCCGCGG-TATCGT GCAAA ACGAAGTCCGTGGAGTTC TTTACTTTCTGCAAA TERM 2008 1319288 - 1319321 + gT 71 -6 -4.18676 | gap 1, overlap 1319285 TCTGTACGTATGGAA CTCCGCGG-TATCGT GCAAA ACGAAGTCCGTGGAG TTCTTTACTTTCTGC Aflv_1306 1320676 - 1320506 - | hypothetical protein TERM 2009 1320613 - 1320591 - GH 100 -13.6 -5.62288 | opp_overlap 1320591 TTAACAAAAGAAAAA CGATTTTGTC CTT GACAAAATCG TTTTTCAACAGTCTG TERM 2010 1320591 - 1320613 + gH 100 -13.6 -4.59109 | opp_overlap 1320591 TTAACAAAAGAAAAA CGATTTTGTC CTT GACAAAATCG TTTTTCAACAGTCTG TERM 2011 1320631 - 1320649 + gH 100 -13.2 -3.6445 | opp_overlap 1320624 1320635, overlap 1320623 TTTCAACAGTCTGAA GCGACAGA CGA TCTGTCGC TTTGAAAATTATTGT TERM 2012 1321013 - 1320998 - g 74 -6.2 -4.46615 | opp_overlap 1320998 GATGAGCAAGTAAAA TTGCTT GAAA AAGCAA TTGCTTCTCGTGTTG rbsB 1320698 - 1321696 + | ABC-type sugar transport system, periplasmic component TERM 2013 1322491 - 1322476 - gf 86 -3.3 -5.69262 | TTAGAAAAAGAAAAA CTAGT GCGTGA ACTAG AGTTAAAAGCGTTAC yesM 1321693 - 1323132 + | Signal transduction histidine kinase TERM 2014 1323457 - 1323437 - gf 72 -3.4 -5.03747 | AAACCTGCGAAAAAA CAACAAAT GATTG ATTTGTTA CAAAAATTGTTACAG yesN 1323056 - 1324342 + | DNA-binding response regulator (contains REC and AraC-type DNA-binding domain) TERM 2015 1324328 - 1324352 + F 100 -7.9 -5.95946 | opp_overlap 1324347, overlap 1324346 TATCGGCAAGATGTG TGCGAGCGT GCATAAA ACGTTCGCA TTTTTTTGTTGTTGG TERM 2016 1324445 - 1324465 + F 70 -3.3 -4.93898 | opp_overlap 1324454 GCGCAAATAAGTGAA GAAAGTG AAGAAAA CGCTTTC TTTTTCTCGTGGTAT TERM 2017 1324660 - 1324640 - g 73 -2.5 -5.18357 | opp_overlap 1324641 1324642, overlap 1324642 GAATCGACGAAAAAA GACGACGAC AAA ATTGTCATC GGTTTTTCGATGGAT TERM 2018 1324661 - 1324642 - g 79 -8.6 -4.2131 | opp_overlap 1324642 1324641, overlap 1324640 ATCGACGAAAAAAGA CGACGACA AAAT TGTCATCG GTTTTTCGATGGATA rbsB 1324523 - 1325605 + | ABC-type ribose transport system, periplasmic component TERM 2019 1325641 - 1325603 - f 100 -19.8 -4.19577 | opp_overlap 1325612, overlap 1325609 CAATGGCCAAAACAA TGAAAACAAGGGGCTGGC TTT GCCAGACCCTTATTTTCA ACATGATACAACGGG TERM 2020 1325635 - 1325609 - f 100 -13 -4.67123 | opp_overlap 1325612, overlap 1325603 CCAAAACAATGAAAA CAAGGGGCTGGC TTT GCCAGACCCTTA TTTTCAACATGATAC TERM 2021 1325612 - 1325632 + F 100 -12.5 -4.18506 | opp_overlap 1325609 1325603 AAACAATGAAAACAA GGGGCTGGC TTT GCCAGACCC TTATTTTCAACATGA TERM 2022 1327031 - 1327017 - g 73 -5.6 -4.41897 | AATAAATTAGCAAAA GAAGGC GTT GCCATC ATGATGATTTCTTCT rbsA 1325622 - 1327175 + | ABC-type ribose transport system, ATPase component TERM 2023 1327401 - 1327413 + G 70 -7.7 -3.68619 | CTTGTTATTGTCGCG GGTCA TAT TGACC TTTCCGTCGGTTCGA TERM 2024 1327957 - 1327945 - g 74 -4.8 -4.84359 | TCATTGCGACAAAAA CGAC ATTTG GTCG TCACGTATACGCCAT TERM 2025 1328016 - 1328036 + G 86 -9.1 -4.32857 | opp_overlap 1328015 1328012 TCTGGAATTAACATC CAACGTCAT ACG ATGATGTTG TTTGTCTTTACGGGG rbsC 1327179 - 1328348 + | ABC-type ribose transport system, permease component TERM 2026 1328346 - 1328390 + F 79 -9.7 -3.66438 | gap 1, opp_overlap 1328357, overlap 1328357 1328388 AAACGGAAAACAAGT TAGAT-AAAAAAGCTGATCG TTTTCT CGGTCAGCTTTTTTCATTTA TTGTATAATTATTTC TERM 2027 1328378 - 1328357 - f 89 -5.8 -5.38951 | opp_overlap 1328346 1328357 AAGTTAGATAAAAAA GCTGATCG TTTTCT CGGTCAGC TTTTTTCATTTATTG TERM 2028 1328357 - 1328378 + F 93 -8 -5.46129 | opp_overlap 1328357, overlap 1328346 AAGTTAGATAAAAAA GCTGATCG TTTTCT CGGTCAGC TTTTTTCATTTATTG menC 1328391 - 1329533 + | O-succinylbenzoate-CoA synthase TERM 2029 1329668 - 1329679 + G 81 -7.2 -4.72188 | overlap 1329667 TAGCGAAATTTACGC GCGC ATAT GCGC TTTCTTTTCAATTGC Aflv_1314 1329538 - 1330050 + | hypothetical protein Aflv_1315 1330115 - 1330375 + | Uncharacterized protein conserved in bacteria, Cys rich Aflv_1316 1330429 - 1330863 + | hypothetical protein TERM 2030 1330889 - 1330867 - T 93 -9.9 -4.76041 | opp_overlap 1330867 TATATTCACTAAAAA GGTGTTCCA ACTAA CGGAACACC TTAATTCATTAACAT TERM 2031 1330867 - 1330889 + T 74 -9.2 -3.45634 | opp_overlap 1330867 TATATTCACTAAAAA GGTGTTCC AACTAAC GGAACACC TTAATTCATTAACAT Aflv_1317 1331260 - 1330898 - | hypothetical protein TERM 2032 1330938 - 1330971 + g 70 -5.5 -4.41633 | gap 1, opp_overlap 1330947, overlap 1330935 1330945 ATACATAATTTTCCG CAGCAAATACCAGT TGATGTT ACTGGTGTTT-CTG TTGTTTTTAGCGCTG Aflv_1318 1331326 - 1332312 + | hypothetical protein TERM 2033 1332342 - 1332316 - T 86 -7.9 -4.96848 | opp_overlap 1332316 TGTCCGATATAAAAA GAGAGCGACGC GTCAA GCGAAGCTCTC TTATAGCGTAAAGTC Aflv_1319 1332882 - 1332343 - | hypothetical protein Aflv_1320 1333606 - 1332944 - | Acetyltransferase (GNAT) family Aflv_1321 1334474 - 1333617 - | Predicted amidohydrolase TERM 2034 1333769 - 1333759 - G 73 -8.2 -3.63744 | overlap 1333757 CCTTCCGCTAAAATA CCGC GTG GCGG GAACGGAATATCGTT TERM 2035 1333832 - 1333852 + g 80 -10.4 -3.41745 | CCCGCATAAAGTCGA CGGTTGGC AATGA GCCGACCG TTCCTGTTGTGACGA TERM 2036 1334476 - 1334488 + H 90 -3.4 -5.9667 | ACGCGCATTTTCAAC GAAG CTCAC CTTC TTTTTTTGTATTTTT bsaA 1334531 - 1335100 + | Glutathione peroxidase TERM 2037 1335087 - 1335110 + F 91 -6 -5.49234 | opp_overlap 1335087 CTTTGCTTCGCGAAA CCGTCTCT CGCTAAAA AGAGGCGG TTTTTTGTTGGATGT TERM 2038 1335483 - 1335471 - g 73 -5.5 -4.59773 | overlap 1335476 GTCGATGTGCAAAAA GCGAA CGT TCCGC CAATTGTACAAACGA cotS 1335183 - 1336295 + | Spore coat protein cotS Aflv_1324 1336271 - 1337602 + | Glycosyltransferase TERM 2039 1337605 - 1337626 + T 76 -7.3 -4.2573 | opp_overlap 1337605 1337600 GATTACGACATAAAA CTCCCAC TTACGTTT GTGGGAG TTTTGGCCTTGTTTG TERM 2040 1337626 - 1337605 - T 81 -7.3 -4.58424 | opp_overlap 1337605, overlap 1337600 GATTACGACATAAAA CTCCCAC TTACGTTT GTGGGAG TTTTGGCCTTGTTTG Aflv_1325 1338844 - 1337612 - | Glycine/D-amino acid oxidase (deaminating) TERM 2041 1339341 - 1339355 + GH 70 -7.8 -3.73224 | opp_overlap 1339341 GTCATTTTATCAAAA TCGCCG CAT CGGTGA TTTAATGGCACATGC TERM 2042 1339355 - 1339341 - gH 70 -5.6 -4.26903 | opp_overlap 1339341 GTCATTTTATCAAAA TCGCCG CAT CGGTGA TTTAATGGCACATGC TERM 2043 1340694 - 1340657 - gH 71 -4.1 -4.74706 | gap 1, opp_overlap 1340669 TTGAAGATGGAAAAA TTGTTCAACGTGGCACGC ATG ACGAGCT-CGTTGCACAA GACGGATGGTATCGG Aflv_1326 1339012 - 1340766 + | ABC-type multidrug transport system, ATPase and permease component TERM 2044 1341610 - 1341622 + GT 73 -5.5 -4.51847 | GCCCAGTTGAAATTG GCGTG TTA TACGC TTTTGTCAATTATTT Aflv_1327 1340700 - 1342529 + | ABC-type multidrug transport system, ATPase and permease component TERM 2045 1342545 - 1342565 + T 79 -10.4 -3.59262 | opp_overlap 1342539 1342538 GAGAATAAGTCTGAA CCGCCACG CTTTA TGTGGCGG TTTCACAATGTACGA Aflv_1328 1343481 - 1342555 - | Predicted Zn-dependent hydrolase of the beta-lactamase fold Aflv_1329 1343817 - 1344773 + | Extracellular ribonuclease TERM 2046 1346282 - 1346309 + F 90 -9.2 -5.00895 | opp_overlap 1346282, overlap 1346281 GATAGGCATAGGATA GGGTGTCCCA CTATTTCT TGGGACACTC TTTTTGTGTCATGAA TERM 2047 1346356 - 1346346 - f 81 -2.6 -5.65927 | opp_overlap 1346346 CATTTAAATAAAAAA TTTT CAA AAAA ATGTTGCATTTCCGC TERM 2048 1346571 - 1346556 - g 71 -3.2 -4.92777 | AACACGAATGAAAAA CGCG GGCCATGT CGCG GGAAAACAAATATTA TERM 2049 1346736 - 1346755 + G 72 -8 -3.83868 | overlap 1346732 AAATGTTCCACTTGA GTTGAAAT TTCT ATTTCAAC TTGCTTTTGTTGGTG TERM 2050 1347727 - 1347716 - g 73 -5.8 -4.56367 | opp_overlap 1347716 CAGCTTATAAACAAA CGAC AACA GTCG TTTCATCTCGTTCGT nrgA 1346428 - 1347747 + | Ammonia permease TERM 2051 1347823 - 1347843 + G 100 -12.7 -4.5477 | opp_overlap 1347823 1347827 TATGTCAGAATTGAA GCAACTTCA CGA TGAAGTTGC TTTTCTCCTCTCTTC TERM 2052 1347843 - 1347823 - g 93 -12.7 -3.2375 | opp_overlap 1347823, overlap 1347827 TATGTCAGAATTGAA GCAACTTCA CGA TGAAGTTGC TTTTCTCCTCTCTTC Aflv_1333 1347761 - 1348789 + | Predicted nucleotidyltransferase DUF294 family Aflv_1334 1348790 - 1349512 + | 3'-5' exonuclease related protein TERM 2053 1349499 - 1349524 + F 100 -10.5 -5.40072 | TATATGCATTACTTA GTCAATGTTCG TAAA CGAGCGTTGAC TTTTTTTGCGAAAAA Aflv_1335 1349600 - 1349905 + | Transcriptional regulator, ArsR family TERM 2054 1350428 - 1350452 + G 77 -10.7 -2.82516 | opp_overlap 1350433 1350436, overlap 1350432 1350433 1350446 TAGAAGGACTAGGGA TGGAACGAGCG CGT CGCTCGCTTCA TATGCTGCTGAAACA TERM 2055 1350447 - 1350433 - g 84 -11.4 -3.08464 | opp_overlap 1350433 1350432 1350428 1350446, overlap 1350436 GGACTAGGGATGGAA CGAGCG CGT CGCTCG CTTCATATGCTGCTG TERM 2056 1350433 - 1350447 + G 80 -11.4 -2.57944 | opp_overlap 1350433 1350436, overlap 1350432 1350428 1350446 GGACTAGGGATGGAA CGAGCG CGT CGCTCG CTTCATATGCTGCTG TERM 2057 1351958 - 1352012 + G 95 -12.4 -3.39288 | opp_overlap 1351974, overlap 1351974 GCATACTGAGCTTAT TCATTTTATGGGAAAAGCGCACGATT TAA AGTTGTGCGCTTTTCTAAAAAAAGGA TATTATTCAGAAATA Aflv_1336 1349917 - 1351986 + | Cation transport ATPase, contains heavy metal-binding domain TERM 2058 1351974 - 1351996 + F 91 -10.6 -4.36914 | opp_overlap 1351974, overlap 1351958 CATTTTATGGGAAAA GCGCACGATT TAA AGTTGTGCGC TTTTCTAAAAAAAGG TERM 2059 1351996 - 1351974 - f 71 -6.2 -4.14243 | opp_overlap 1351974 1351958 CATTTTATGGGAAAA GCGCACGATT TAA AGTTGTGCGC TTTTCTAAAAAAAGG Aflv_1337 1352096 - 1354021 + | Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) TERM 2060 1354000 - 1354034 + F 79 -5 -5.09204 | opp_overlap 1354007, overlap 1354007 TGAACAACATAATCA ATCGAAAGAGGCGCTG CAT TAGCGTCTCTTTTCAC TTTTTGTTCACATAT TERM 2061 1354007 - 1354027 + F 91 -9.7 -4.52505 | opp_overlap 1354007, overlap 1354000 CATAATCAATCGAAA GAGGCGCTG CAT TAGCGTCTC TTTTCACTTTTTGTT TERM 2062 1354717 - 1354692 - g 82 -3.3 -5.49729 | overlap 1354697 AATGATCGAAAAAAA TGAAATAACGA ATGC TCGCTATGCCA TTCATTTCATGTATG nosD 1354114 - 1355451 + | Periplasmic copper-binding protein NosD nosL 1355435 - 1355881 + | Predicted lipoprotein involved in nitrous oxide reduction, contains heavy metal-binding domain nosY 1355878 - 1356687 + | ABC-type transport system involved in multi-copper enzyme maturation, permease component TERM 2063 1356731 - 1356741 + GF 78 -4 -5.0916 | opp_overlap 1356731 GAACAAAATAAAGTA GAAA ACA TTTC TTTTTCTGTTCAAGA nosF 1356680 - 1357381 + | ABC-type copper transport system, ATPase component TERM 2064 1357386 - 1357404 + GF 100 -8.2 -5.26875 | opp_overlap 1357386 TGTCATACTGAAAAA GTAAGCAA ATA TTGCTTGC TTTTTTCATTCGAAG TERM 2065 1357404 - 1357386 - gf 80 -6 -4.70659 | opp_overlap 1357386 TGTCATACTGAAAAA GTAAGCAA ATA TTGCTTGC TTTTTTCATTCGAAG Aflv_1342 1357350 - 1358057 + | Phosphoglycerate mutase Aflv_1343 1358054 - 1358581 + | Nuclease of thermonuclease family TERM 2066 1358591 - 1358609 + T 78 -7.4 -4.34402 | opp_overlap 1358591 TCGTAAATGTGAAAA GGGCTG GATGAAA CAGCCC TTTTAATGTGCGAGC TERM 2067 1358609 - 1358591 - T 76 -7.4 -4.24002 | opp_overlap 1358591 TCGTAAATGTGAAAA GGGCTG GATGAAA CAGCCC TTTTAATGTGCGAGC TERM 2068 1358616 - 1358636 + T 72 -8.3 -3.50639 | overlap 1358614 1358618 AAACAGCCCTTTTAA TGTGCGAGC ATC GCTTGCATA TCTTCTTCTACATTA TERM 2069 1358618 - 1358634 + T 70 -8.7 -3.3161 | overlap 1358616 1358614 ACAGCCCTTTTAATG TGCGAGC ATC GCTTGCA TATCTTCTTCTACAT Aflv_1344 1359928 - 1358612 - | Iron-sulfur protein of HCP family TERM 2070 1360190 - 1360211 + H 100 -5.9 -5.75538 | opp_overlap 1360190 TTTTCAGTATGTAAA CTAGTCG ATTCTGTC CGACTAG TTTTTATTTTTTAGG thiM 1360235 - 1361029 + | Hydroxyethylthiazole kinase, sugar kinase family TERM 2071 1361403 - 1361387 - g 89 -3.5 -5.66868 | AATGAAGTAAAAAAA GCGCTTG CTG CTTGCGC CGATTATGTTGGATT thiE 1361030 - 1361683 + | Thiamine monophosphate synthase TERM 2072 1361661 - 1361701 + F 74 -9.2 -3.49668 | opp_overlap 1361666 1361672 1361674, overlap 1361672 AGATGGTCATGCGTG CAAAACAAAAAGGCGACA GGTGA TGTCGTCTTTTTCCTTTG TTCTGTGCAGGATTT TERM 2073 1361672 - 1361690 + F 85 -6.7 -5.10877 | opp_overlap 1361672 1361666 1361674, overlap 1361661 CGTGCAAAACAAAAA GGCGACA GGTGA TGTCGTC TTTTTCCTTTGTTCT TERM 2074 1361690 - 1361672 - f 86 -4.5 -5.45802 | opp_overlap 1361661 1361672, overlap 1361666 1361674 CGTGCAAAACAAAAA GGCGACA GGTGA TGTCGTC TTTTTCCTTTGTTCT Aflv_1347 1361726 - 1362532 + | Enoyl-CoA hydratase/carnithine racemase TERM 2075 1363260 - 1363274 + G 70 -7.8 -3.66844 | overlap 1363263 1363264 ATGTCATGGGGCATG GTGTCG CAT CGGCAC TTGTTGCGATGTCGA rsbU 1362629 - 1363765 + | Response regulator with PP2C-type protein phosphatase output domain (REC-PP2C domains) TERM 2076 1363773 - 1363791 + T 71 -5.2 -4.55209 | opp_overlap 1363773 TAAAATAGCAGAAAA GGGGCT CTATTTC GGCCCC TTTATTTAATGTCTA rsbV 1364086 - 1363793 - | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor, stand-alone STAS domain) rsbW 1364475 - 1364083 - | Anti-sigma regulatory factor (Ser/Thr protein kinase) Aflv_1351 1364728 - 1364453 - | hypothetical protein hemAT 1366173 - 1364806 - | Methyl-accepting chemotaxis protein TERM 2077 1366607 - 1366594 - g 73 -5.3 -4.67982 | GTTCACCCAACAAAA TGTTG TACA CAACA TCAAATGCAAACAAC Aflv_1353 1366546 - 1366779 + | hypothetical protein TERM 2078 1366780 - 1366800 + F 100 -12.6 -5.24129 | opp_overlap 1366785, overlap 1366795 CCGAGACCATTTTAA CCGAAGGC AATTC GCCTTCGG TTTTTTGTCGAAAAA Aflv_1354 1366904 - 1367200 + | Cell division initiation protein TERM 2079 1367678 - 1367701 + G 100 -10.4 -5.61881 | gap 1 TGATTCATGGCATCA CTCTCCTGCAC AGC GT-CAGGAGAG TTTTTGTTTTTCGGG Aflv_1355 1367669 - 1369453 + | Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) Aflv_1356 1369454 - 1370593 + | Predicted N6-adenine-specific DNA methylase TERM 2080 1370593 - 1370621 + F 100 -12.6 -4.21768 | opp_overlap 1370599, overlap 1370599 TCCGCCACGTTCTTA GAAAAAGCTGTC TCGCT GGCAGCTTTTTC TTTTCAACTTCATTG TERM 2081 1370599 - 1370615 + F 89 -5.8 -5.46706 | opp_overlap 1370599, overlap 1370593 ACGTTCTTAGAAAAA GCTGTC TCGCT GGCAGC TTTTTCTTTTCAACT TERM 2082 1372453 - 1372463 + G 71 -6.8 -4.09685 | opp_overlap 1372453 CGAAGCGGAAGCAGA CGGA AAA TCCG TTTTGGGAAGTGGAC Aflv_1357 1370709 - 1372637 + | Rad3-related DNA helicase TERM 2083 1373689 - 1373699 + G 71 -4 -4.83169 | CATTTTGTTGACGTT TCAT TGG ATGA TTTTTATCGCGCAAT TERM 2084 1373870 - 1373860 - g 75 -5.4 -4.86621 | opp_overlap 1373860 ATTTGGAATGAAAAA TACG AGA CGTA TTTAGGTGTCCGTCC TERM 2085 1374092 - 1374075 - g 70 -7.1 -3.86524 | AGAGTGGCTTACAAA CCATATT CACC AATATGG AAAGACGAAAAAGCC Aflv_1358 1372690 - 1374204 + | Zn-dependent carboxypeptidase (thermostable) TERM 2086 1374209 - 1374224 + T 100 -11.8 -5.40474 | opp_overlap 1374209 ATCGATTATAAAAAA CCGGGC AAAT GCCCGG TTTTTTTACCAAAGT TERM 2087 1374224 - 1374209 - T 100 -11.8 -5.31877 | opp_overlap 1374209 ATCGATTATAAAAAA CCGGGC AAAT GCCCGG TTTTTTTACCAAAGT ctaD 1375879 - 1374230 - | Cytochrome c oxidase (b(o/a)3-type) chain I Aflv_1360 1376349 - 1375876 - | Cytochrome c oxidase (b(o/a)3-type) chain II Aflv_1361 1376949 - 1378178 + | Transposase TERM 2088 1378415 - 1378372 - T 73 -5.6 -4.5954 | gap 1, opp_overlap 1378372 1378385, overlap 1378367 TTACATCATACAAAA CAATTTGCGAAATGAAACG CTTTCTT CGTAT-ATTTCACAAATTG TTCATTCGTTACTTT TERM 2089 1378566 - 1378545 - T 100 -9.5 -5.95286 | opp_overlap 1378545 1378548 ATGAAAAATAAAAAA GAAGCTTAC AAAC GCAAGCTTC TCTTCGCACTTATTC cheX 1379058 - 1378576 - | CheC TERM 2090 1379195 - 1379222 + H 86 -7.8 -4.91873 | gap 1, opp_overlap 1379195, overlap 1379216 TTCAAAACGTCGAAA GCTTTCCTC-CTA TTG TGGTGGGGAAAGC TTTTTCCTTCATATG bcsA 1379273 - 1380355 + | Naringenin-chalcone synthase Aflv_1364 1380337 - 1380858 + | hypothetical protein TERM 2091 1380839 - 1380868 + F 90 -8.7 -4.9792 | opp_overlap 1380844, overlap 1380846 AGGCGCTACGTTTAT TAAAATCTCCCCA TAAG TAGGGGGATTTTA TTTTTCTGTGAACTA TERM 2092 1380846 - 1380863 + F 89 -5.5 -5.38839 | opp_overlap 1380844, overlap 1380839 ACGTTTATTAAAATC TCCCCAT AAGT AGGGGGA TTTTATTTTTCTGTG TERM 2093 1380961 - 1380947 - g 76 -2.8 -5.3658 | opp_overlap 1380947 1380948, overlap 1380948 ATGACAAAAACAAAA TCATTG CAA CAATGG TTATATCGTCTCATC Aflv_1365 1380917 - 1384549 + | Predicted GTPase Aflv_1366 1384542 - 1384814 + | hypothetical protein Aflv_1367 1384816 - 1385016 + | hypothetical protein TERM 2094 1385033 - 1385020 - f 71 -9.5 -2.84566 | opp_overlap 1385020, overlap 1385017 AATATTCGATAAGGA GGCGC ACAT GCGCC TTTTCTTATGAGATG TERM 2095 1385020 - 1385033 + F 93 -9.5 -4.78237 | opp_overlap 1385020 1385017 AATATTCGATAAGGA GGCGC ACAT GCGCC TTTTCTTATGAGATG Aflv_1368 1385046 - 1385588 + | Thiol:disulfide interchange protein (thioredoxin) TERM 2096 1385586 - 1385603 + G 100 -9.9 -5.53079 | opp_overlap 1385586 GAAAAATGGGGAAAA TAGCCGA AGAG TCGGCTA TTTTTTGTATATTTT TERM 2097 1385603 - 1385586 - g 88 -9.9 -4.20883 | opp_overlap 1385586 GAAAAATGGGGAAAA TAGCCGA AGAG TCGGCTA TTTTTTGTATATTTT Aflv_1369 1385576 - 1385800 + | hypothetical protein sspN 1385836 - 1385979 + | Small acid-soluble spore protein TERM 2098 1385977 - 1385999 + F 79 -9.2 -3.85909 | opp_overlap 1385980, overlap 1385980 CAAACGAAGGGCGAA TAAGGGCG CAAATGT CGCCCTTA TTTAAGTTTACATAA TERM 2099 1386260 - 1386249 - g 85 -4.4 -5.49729 | AATCAGGGAAAAAAA TCAC CGAC GTGA AGAAGCGATCGAAGC Aflv_1371 1386106 - 1386333 + | Small acid-soluble spore protein (thioredoxin-like protein), tlp TERM 2100 1386334 - 1386353 + F 100 -4.9 -6.31682 | opp_overlap 1386336, overlap 1386336 GGGTACGAATTGTAA AAGCCGC TTATGT GCGGCTC TTTTTTTTTGCTTTT TERM 2101 1386336 - 1386351 + F 83 -7.5 -4.74676 | opp_overlap 1386336, overlap 1386334 GTACGAATTGTAAAA GCCGC TTATGT GCGGC TCTTTTTTTTTGCTT TERM 2102 1386351 - 1386336 - f 76 -7.5 -4.20696 | opp_overlap 1386334 1386336 GTACGAATTGTAAAA GCCGC TTATGT GCGGC TCTTTTTTTTTGCTT TERM 2103 1386590 - 1386578 - g 72 -7.7 -3.83188 | overlap 1386576 GATATGGAGAAAAGA GGGAT TGT ATCCC CAGTTATTGATTTAC Aflv_1372 1386425 - 1386844 + | Thioesterase family protein TERM 2104 1386840 - 1386868 + T 93 -14 -3.0094 | opp_overlap 1386840, overlap 1386842 1386847 AGCGGGCAAAAAAAA GATAAAGGCGGG AAAAA CCCGCTTTTATC TATATGTGAATACCG TERM 2105 1386868 - 1386840 - T 100 -11.8 -5.75945 | opp_overlap 1386840 1386842 1386847 AGCGGGCAAAAAAAA GATAAAGGCGGG AAAAA CCCGCTTTTATC TATATGTGAATACCG TERM 2106 1386842 - 1386866 + T 78 -10.8 -3.05993 | opp_overlap 1386840, overlap 1386840 1386847 CGGGCAAAAAAAAGA TAAAGGCGGG AAAAA CCCGCTTTTA TCTATATGTGAATAC TERM 2107 1386847 - 1386861 + T 88 -8.5 -4.6645 | opp_overlap 1386840, overlap 1386842 1386840 AAAAAAAAGATAAAG GCGGG AAAAA CCCGC TTTTATCTATATGTG Aflv_1373 1387163 - 1386864 - | hypothetical protein Aflv_1374 1387472 - 1388410 + | Metal ion transporter TERM 2108 1388414 - 1388431 + F 100 -7.7 -5.80248 | opp_overlap 1388414 1388417 CGTTACTTTTAGCAA GGACGGT GTTA ACCGTTC TTTTTTTATATGTTA TERM 2109 1388753 - 1388769 + G 70 -8 -3.73068 | opp_overlap 1388752 GGAAAAAAAGATTAT GCAGGT TGTTT ACCTGC TTGTTCGATTACAAA TERM 2110 1389198 - 1389178 - g 79 -3.3 -5.29385 | overlap 1389179 1389180 1389182 AATTCAATTAAAAAA TGGACATAT GCT ATATGCCGA TCGTGTCGTCATCGC Aflv_1375 1388555 - 1389994 + | Uncharacterized FAD-dependent dehydrogenase TERM 2111 1389991 - 1390011 + F 100 -9.8 -5.5074 | opp_overlap 1389994 TGTCGAAACGTCTAA CTAGCGAA GGTTG TTCGCTAG TTTTTTGTTAACTTA bioB 1390071 - 1391090 + | Biotin synthetase TERM 2112 1391079 - 1391128 + F 84 -12.5 -2.93616 | gap 1, opp_overlap 1391095, overlap 1391079 1391095 TTTGCTCCAGCATCT TATGCGAGATAAAAAAGCCGACGT TGT GTGTCGGCTTTTTTATCT-GTACA TATACTATTACTAAT TERM 2113 1391079 - 1391130 + F 90 -13.4 -2.79209 | gap 1, opp_overlap 1391095, overlap 1391079 1391095 TTTGCTCCAGCATCT TATGCG-AGATAAAAAAGCCGACGT TGT GTGTCGGCTTTTTTATCTGTACATA TACTATTACTAATTA TERM 2114 1391095 - 1391113 + F 95 -8.8 -5.4251 | opp_overlap 1391095, overlap 1391079 1391079 ATGCGAGATAAAAAA GCCGACGT TGT GTGTCGGC TTTTTTATCTGTACA TERM 2115 1391113 - 1391095 - f 93 -7.4 -5.37043 | opp_overlap 1391079 1391079 1391095 ATGCGAGATAAAAAA GCCGAC GTTGTGT GTCGGC TTTTTTATCTGTACA Aflv_1377 1391601 - 1391774 + | hypothetical protein TERM 2116 1391777 - 1391793 + F 100 -7.2 -5.63103 | opp_overlap 1391772 1391777 AATTGATGAATAAAA CGGCGG ATGTC CCGTCG TTTTTTTGCTTGAAA TERM 2117 1391793 - 1391777 - f 75 -5.7 -4.731 | opp_overlap 1391777, overlap 1391772 AATTGATGAATAAAA CGGCGGA TGT CCCGTCG TTTTTTTGCTTGAAA TERM 2118 1391812 - 1391822 + G 93 -4 -5.84381 | TTTTGCTTGAAATTT GAAA CAT TTTC TTTTTTTATTCGTAC TERM 2119 1392255 - 1392238 - g 74 -4.9 -4.80882 | gap 1, overlap 1392239 1392240 ACTCGATATTAAAAA TGCTGTCG ATC CGACAG-A TGAAGATTACATTCG TERM 2120 1392254 - 1392240 - g 71 -10 -2.68202 | overlap 1392238 1392239 TCGATATTAAAAATG CTGTCG ATC CGACAG ATGAAGATTACATTC spo0M 1391810 - 1392643 + | Sporulation control protein TERM 2121 1392672 - 1392655 - f 93 -9.9 -5.12707 | opp_overlap 1392655 TTAAAGCTTAAAAAA GATTGGG GATT CCCAATC TTTTTTATTATGTCG TERM 2122 1392655 - 1392672 + F 100 -9.9 -5.60689 | opp_overlap 1392655 TTAAAGCTTAAAAAA GATTGGG GATT CCCAATC TTTTTTATTATGTCG Aflv_1379 1392757 - 1393107 + | hypothetical protein TERM 2123 1393184 - 1393211 + T 100 -4.8 -5.75822 | opp_overlap 1393186 1393187, overlap 1393187 TAGAGTATGATAAAA AATTCCCCTTGT GCGT GCAAGGGGATTA TTTTTTTCGTTTATC TERM 2124 1393209 - 1393186 - T 89 -6.7 -5.32882 | opp_overlap 1393184 1393187, overlap 1393187 GAGTATGATAAAAAA TTCCCCTTG TGCGTG CAAGGGGAT TATTTTTTTCGTTTA TERM 2125 1393208 - 1393187 - T 80 -10.2 -3.78644 | opp_overlap 1393187 1393184, overlap 1393186 AGTATGATAAAAAAT TCCCCTTG TGCGTG CAAGGGGA TTATTTTTTTCGTTT TERM 2126 1393187 - 1393208 + T 93 -10.9 -4.90519 | opp_overlap 1393186 1393187, overlap 1393184 AGTATGATAAAAAAT TCCCCTTGT GCGT GCAAGGGGA TTATTTTTTTCGTTT Aflv_1380 1393385 - 1393209 - | hypothetical protein TERM 2127 1393444 - 1393458 + G 80 -2.8 -5.57396 | overlap 1393436 TGATTTCTTCCATCG TCGGAA TTG TTGCGA TTTTTTGTTCCTTGT TERM 2128 1393753 - 1393736 - g 73 -2.7 -5.1167 | overlap 1393730 AAGTGAAGATAAAAA GGTTTTA TACG TGAAACC AAAGTATTTTCGCAA Aflv_1381 1393404 - 1393778 + | hypothetical protein TERM 2129 1393794 - 1393780 - f 88 -11.4 -3.60818 | opp_overlap 1393780 GCAAAATGTCGTAAA GAGGGG AAT CCCCTC TTTTTTTATACATGA TERM 2130 1393780 - 1393794 + F 100 -11.4 -5.64274 | opp_overlap 1393780 GCAAAATGTCGTAAA GAGGGG AAT CCCCTC TTTTTTTATACATGA deoD 1393884 - 1394588 + | Purine-nucleoside phosphorylase TERM 2131 1394642 - 1394598 - f 100 -10.2 -5.2166 | gap 1, opp_overlap 1394599 1394602 1394606, overlap 1394599 CAATAAGCTAAAAAA TGAAGAAAGCTCCTGCGAA TCATTTTC CTCGC-GGAGCTTTCTTCT ATTCGTGAGGGAGAA TERM 2132 1394641 - 1394599 - f 95 -13.7 -3.71369 | gap 1, opp_overlap 1394599 1394602 1394606, overlap 1394598 AATAAGCTAAAAAAT GAAGAAAGCTCCTGCGAA TCATTTTC CTCGC-GGAGCTTTCTTC TATTCGTGAGGGAGA TERM 2133 1394599 - 1394641 + F 91 -13 -3.13403 | gap 1, opp_overlap 1394598 1394599, overlap 1394602 1394606 AATAAGCTAAAAAAT GAAGAAAGCTCCTGCGA ATCATTTTCC TCGC-GGAGCTTTCTTC TATTCGTGAGGGAGA TERM 2134 1394602 - 1394638 + F 76 -8.9 -3.71284 | gap 1, opp_overlap 1394599 1394598, overlap 1394599 1394606 AAGCTAAAAAATGAA GAAAGCTCCTGCGA ATCATTTTCC TCGC-GGAGCTTTC TTCTATTCGTGAGGG Aflv_1383 1394661 - 1395464 + | D-alanyl-D-alanine carboxypeptidase Aflv_1384 1395799 - 1395467 - | hypothetical protein TERM 2135 1395875 - 1395849 - R 100 -13.8 -4.86033 | opp_overlap 1395849 AAATTTCGACAAAAA GGGAGCTACTGT GTG AAAGTAGCTCCC TTTTTATAACACAAT TERM 2136 1395849 - 1395875 + r 100 -13.8 -4.83169 | opp_overlap 1395849 AAATTTCGACAAAAA GGGAGCTACTGT GTG AAAGTAGCTCCC TTTTTATAACACAAT Aflv_1385 1397195 - 1395879 - | Predicted permease Aflv_1386 1397418 - 1398296 + | Predicted Co/Zn/Cd cation transporter Aflv_1387 1398321 - 1399220 + | Predicted permease TERM 2137 1399221 - 1399241 + T 100 -9 -6.07627 | opp_overlap 1399221 TCATTAAACGTATAA CGTCTGTC GGTGA GACAGGCG TTTTTTTTTACCCAT TERM 2138 1399564 - 1399595 + T 100 -14.6 -3.21703 | opp_overlap 1399569, overlap 1399569 GTGCAGCTTGGTGCT AAAAAGCAAGAGGG GGCT CCCTCTTGCTTTTA TATATGTTTCCATTT TERM 2139 1399590 - 1399569 - T 100 -14.5 -4.56597 | opp_overlap 1399569 1399564 GCTTGGTGCTAAAAA GCAAGAGGG GGCT CCCTCTTGC TTTTATATATGTTTC TERM 2140 1399569 - 1399590 + T 100 -14.5 -4.70534 | opp_overlap 1399569, overlap 1399564 GCTTGGTGCTAAAAA GCAAGAGGG GGCT CCCTCTTGC TTTTATATATGTTTC Aflv_1388 1400933 - 1399593 - | Na+-driven multidrug efflux pump TERM 2141 1400205 - 1400178 - G 70 -2.6 -5.00884 | ACTCGTTTCAAAAAA GATCGCTAGTCC AATA GGTATACCGATC AAAATTAATTGCTTC TERM 2142 1400889 - 1400902 + g 86 -2.5 -5.79595 | AGGGAATAGTATATG TAAAA ACTG TTTTA TTTTTTCTTTTAACG TERM 2143 1401273 - 1401283 + G 79 -3.2 -5.28176 | CAGGTGCGATTTCGT CGTT ACA AGCG TTTTTTATGAGTACA TERM 2144 1401956 - 1401938 - g 80 -10.4 -3.52073 | GCCGCAACAGCAGAA GTTTCACA TCC TGTGAAAC AAGGGTTAATTCAAA alsT 1401080 - 1402504 + | Na+/alanine symporter TERM 2145 1402543 - 1402496 - T 70 -2.7 -5.12707 | opp_overlap 1402508, overlap 1402508 GTAAACTTGAAAAAA GAAGCGTAAAAATGAGGCTGC GTGATT GCAGCCTCATTTTTTTGAATA AGCAGGTAGTTCAAT TERM 2146 1402531 - 1402508 - T 100 -12.5 -4.7153 | opp_overlap 1402508, overlap 1402496 AAAGAAGCGTAAAAA TGAGGCTGC GTGATT GCAGCCTCA TTTTTTTGAATAAGC TERM 2147 1402508 - 1402531 + T 100 -13.2 -5.47218 | opp_overlap 1402508 1402496 AAAGAAGCGTAAAAA TGAGGCTGCG TGAT TGCAGCCTCA TTTTTTTGAATAAGC Aflv_1390 1403782 - 1402529 - | Signal transduction histidine kinase TERM 2148 1403631 - 1403647 + g 89 -3.7 -5.68039 | overlap 1403631 GTTTCAATCGTTGGA GAAGGAG CCT TTCTTTC TTTTTTTATGACTTT TERM 2149 1403631 - 1403643 + g 81 -4.1 -5.27709 | overlap 1403631 GTTTCAATCGTTGGA GAAGG AGC CTTTC TTTCTTTTTTTATGA Aflv_1391 1403954 - 1404160 + | hypothetical protein TERM 2150 1404601 - 1404611 + G 85 -4 -5.46657 | AACTTAGTTTTAGAC TTGT TGC ACAA TTTTTTCTTAGAATG Aflv_1392 1404142 - 1405071 + | Mn-containing catalase TERM 2151 1405083 - 1405095 + F 74 -4.8 -4.66535 | opp_overlap 1405075, overlap 1405075 GTAACAAGCTGTGCC GAGC GCATA GCTC TTTCTTTTGCCCCTT ilvA 1405242 - 1406450 + | Threonine dehydratase Aflv_1394 1406550 - 1406765 + | hypothetical protein Aflv_1395 1406780 - 1406989 + | hypothetical protein TERM 2152 1406981 - 1406995 + F 100 -5.6 -5.85011 | opp_overlap 1406981, overlap 1406973 TATTTTACAGAAAAA GCGGTG TAA TGCCGC TTTTTTTCATTTTTA TERM 2153 1406995 - 1406981 - f 71 -4.2 -4.9792 | opp_overlap 1406981 1406973 TATTTTACAGAAAAA GCGG TGTAATG CCGC TTTTTTTCATTTTTA Aflv_1396 1406989 - 1407723 + | hypothetical protein TERM 2154 1407743 - 1407727 - f 77 -5 -4.93968 | opp_overlap 1407727, overlap 1407721 AGTCATAACTAAAAA GCTGCC TTTTG GGCGGC TTTTTTAATTTAAAG TERM 2155 1407727 - 1407743 + F 93 -7.9 -5.37593 | opp_overlap 1407721 1407727 AGTCATAACTAAAAA GCTGCCT TTT GGGCGGC TTTTTTAATTTAAAG TERM 2156 1407791 - 1407820 + F 70 -5.8 -4.35017 | gap 1, opp_overlap 1407791 TCAGGTTAGTTAGAA GCACTCGG-TC TGTTCTTTT GAGCCGAGTGC TTTATTCAATTTTTA Aflv_1397 1407913 - 1408308 + | Transcriptional regulator (GntR family) Aflv_1398 1408295 - 1409194 + | ABC-type multidrug transport system, ATPase component TERM 2157 1410463 - 1410443 - gf 87 -6.1 -5.1101 | CTATGACTTAAAAAA TGGAAAACG AGT CGTTCGCCA ATATACCGTTCCAAT Aflv_1399 1409148 - 1411076 + | ABC-type multidrug transport system, permease component TERM 2158 1411096 - 1411079 - f 73 -7 -4.25283 | opp_overlap 1411079 ATTCGTTGATTAAAA GACCTG CACGTT CAGGTC TTTTTCTTTGTTGGC TERM 2159 1411079 - 1411096 + F 93 -7 -5.47159 | opp_overlap 1411079 ATTCGTTGATTAAAA GACCTG CACGTT CAGGTC TTTTTCTTTGTTGGC TERM 2160 1412518 - 1412540 + G 74 -10 -3.12351 | opp_overlap 1412521, overlap 1412521 CGACAGGTAATGAAG TAACTGTTCA ATC TGAACAGTTG TTAGATGTGGCACAA TERM 2161 1412521 - 1412537 + G 78 -9.5 -3.70773 | opp_overlap 1412521, overlap 1412518 CAGGTAATGAAGTAA CTGTTCA ATC TGAACAG TTGTTAGATGTGGCA TERM 2162 1412537 - 1412521 - g 76 -9.5 -3.46081 | opp_overlap 1412521 1412518 CAGGTAATGAAGTAA CTGTTCA ATC TGAACAG TTGTTAGATGTGGCA Aflv_1400 1411176 - 1413641 + | Peptidase U32 family Aflv_1401 1413665 - 1414285 + | Thioredoxin TERM 2163 1414366 - 1414414 + F 91 -8.2 -5.19275 | opp_overlap 1414357 CAATGATCGTTATAA GCTGCACCTTTGTCGGGTTCAT CTTAT AAGGACTTGACAGAAGTGTAGC TTTTGTTTTATGAGT cspB 1414431 - 1414676 + | Cold shock protein, CspA family TERM 2164 1414716 - 1414690 - f 83 -12.3 -2.6836 | opp_overlap 1414690, overlap 1414687 1414686 AAATAGTCAAACGTA CGGGATCTCGC TTTTC GTGAGATCCCG TTTTTATATGCAACA TERM 2165 1414690 - 1414716 + F 100 -14.5 -4.96848 | opp_overlap 1414687 1414686 1414690 AAATAGTCAAACGTA CGGGATCTCGC TTTTC GTGAGATCCCG TTTTTATATGCAACA TERM 2166 1414812 - 1414830 + F 100 -10.3 -5.44119 | TTTTGTTTGTTCGGA CACGCTC TTGAT GAGCGTG TTTTTTTAAGATAAG TERM 2167 1414972 - 1414957 - f 72 -9 -3.36878 | opp_overlap 1414951 GTTACCCACGCAGAA CCAAGC GACT GCTTGG TTCGAGCTCTCCTCG TERM 2168 1415069 - 1415079 + F 84 -8.2 -4.71426 | overlap 1415038 TTAGGCGAAATCGGG GCGC TTT GCGC TTTTCTTAATAAAAA TERM 2169 1415932 - 1415922 - g 71 -6.8 -4.13945 | opp_overlap 1415922 1415920 ACGTTTATGCCAAAA CCGA TTT TCGG TATTAATGGTTCCGG glnA 1415193 - 1416554 + | Glutamine synthetase TERM 2170 1416557 - 1416574 + F 89 -9.1 -4.80396 | opp_overlap 1416557 GTCGAAATTTTAAAA GCGAGCG ATGA TGCTCGC TTTTTGCATGTTTTC TERM 2171 1416574 - 1416557 - f 82 -8.4 -4.24002 | opp_overlap 1416557 GTCGAAATTTTAAAA GCGAGC GATGAT GCTCGC TTTTTGCATGTTTTC TERM 2172 1416926 - 1416911 - g 84 -3.9 -5.48825 | opp_overlap 1416911 GATGAGCTAAAAAAA CGGGC AAATCA ACCCG TTCAATTCACCAATT Aflv_1404 1416617 - 1417444 + | Lysophospholipase L1-like esterase Aflv_1405 1417444 - 1418355 + | ABC-type multidrug transport system, ATPase component Aflv_1406 1418348 - 1419328 + | ABC-type multidrug transport system, permease component Aflv_1407 1419268 - 1419984 + | NUDIX family hydrolase Aflv_1408 1419963 - 1420922 + | Metallo-beta-lactamase family protein TERM 2173 1421548 - 1421521 - g 75 -2 -5.33124 | gap 1, overlap 1421522 1421523 AACAACAAAACAAAA GTTTGCCGATTTA TTC TGATTCGGC-AAC AGCTATAAAATGGGT Aflv_1409 1421025 - 1421735 + | Predicted double-stranded RNA/RNA-DNA hybrid binding protein TERM 2174 1421738 - 1421760 + T 88 -8.4 -4.7173 | opp_overlap 1421733 1421738 TGGACGAAAGTAAAA GGAGAGGGAT ATT AACCTTCTCC TTTTTGCATGTCATC TERM 2175 1421760 - 1421738 - T 77 -6.2 -4.58773 | opp_overlap 1421738, overlap 1421733 TGGACGAAAGTAAAA GGAGAGGGAT ATT AACCTTCTCC TTTTTGCATGTCATC Aflv_1410 1422855 - 1421749 - | GTPase, G3E family TERM 2176 1423025 - 1423053 + H 100 -14.7 -5.10933 | CATAAGCGCTCATAT GCCGCAAGGAA GGTACTG TTCCTTGCGGC TTTTATTTTCAGTCC TERM 2177 1423066 - 1423091 + H 95 -9.1 -5.4505 | gap 1 GGCTTTTATTTTCAG TCCGCAAAGGGA TCT TCTCTT-GCGGA TTTTTTATTGAAAGG Aflv_1411 1423099 - 1423260 + | hypothetical protein TERM 2178 1423364 - 1423386 + F 100 -11.4 -5.63517 | opp_overlap 1423364 AGTTTTACGCGACAA GAGTTGATCT TAT AGATCAGCTC TTTTTTCTTTACAAA TERM 2179 1423386 - 1423364 - f 72 -9.2 -3.32963 | opp_overlap 1423364 AGTTTTACGCGACAA GAGTTGATCT TAT AGATCAGCTC TTTTTTCTTTACAAA Aflv_1412 1423465 - 1423794 + | Transcriptional regulator, ArsR family Aflv_1413 1423813 - 1425111 + | Arsenical pump membrane protein Aflv_1414 1425127 - 1425543 + | Protein phosphatase, low molecular weight phosphatase family TERM 2180 1425622 - 1425657 + T 95 -14.9 -2.89564 | opp_overlap 1425622 1425625 1425631, overlap 1425625 1425630 ATGATGTATAATGAA GAACACAAACGAGGA ACTTTA TCCTCGCTTGTGTTC TCTGTCAACTAAAAG TERM 2181 1425657 - 1425622 - T 100 -17.1 -3.46212 | opp_overlap 1425622 1425625 1425630, overlap 1425625 1425631 ATGATGTATAATGAA GAACACAAACGAGGA ACTTTA TCCTCGCTTGTGTTC TCTGTCAACTAAAAG TERM 2182 1425625 - 1425654 + T 82 -10.8 -3.59698 | opp_overlap 1425625 1425622 1425631, overlap 1425622 1425630 ATGTATAATGAAGAA CACAAACGAGGA ACTTTA TCCTCGCTTGTG TTCTCTGTCAACTAA TERM 2183 1425654 - 1425625 - T 100 -13 -3.86312 | opp_overlap 1425622 1425625 1425630, overlap 1425622 1425631 ATGTATAATGAAGAA CACAAACGAGGA ACTTTA TCCTCGCTTGTG TTCTCTGTCAACTAA TERM 2184 1425648 - 1425631 - T 76 -7 -4.36774 | opp_overlap 1425630 1425625 1425622, overlap 1425625 1425622 AATGAAGAACACAAA CGAGGA ACTTTA TCCTCG CTTGTGTTCTCTGTC Aflv_1415 1426554 - 1425640 - | Transcriptional regulator, LysR family TERM 2185 1426274 - 1426291 + g 73 -2.7 -5.18643 | AAACTTCCAGCTAAT TCTGTCT GTTC AGAGAGA TTTTGTTTTGCTTCG Aflv_1416 1426658 - 1427590 + | Permease of the drug/metabolite transporter (DMT) superfamily Aflv_1417 1427629 - 1428522 + | Permease of the drug/metabolite transporter (DMT) superfamily TERM 2186 1428502 - 1428532 + F 93 -10.5 -5.0538 | opp_overlap 1428502 1428504, overlap 1428504 AAACCAAAGAAAAAA TCGACCTCCATCA GTGCG TGATGGGGGTCAA TTTTTTAAAATGGCA TERM 2187 1428532 - 1428502 - f 100 -10.5 -5.74086 | opp_overlap 1428502 1428504, overlap 1428504 AAACCAAAGAAAAAA TCGACCTCCATCA GTGCG TGATGGGGGTCAA TTTTTTAAAATGGCA TERM 2188 1428504 - 1428530 + F 90 -13.1 -2.77166 | opp_overlap 1428504 1428502, overlap 1428502 ACCAAAGAAAAAATC GACCTCCATCA GTGCG TGATGGGGGTC AATTTTTTAAAATGG TERM 2189 1428530 - 1428504 - f 78 -10.9 -2.98035 | opp_overlap 1428502 1428504, overlap 1428502 ACCAAAGAAAAAATC GACCTCCATCA GTGCG TGATGGGGGTC AATTTTTTAAAATGG TERM 2190 1428953 - 1428965 + G 87 -6.3 -5.1848 | AGAGTGGGAGCGCCA GTTTG CGA CAAAC TTTTTTGGGTTAGTT Aflv_1418 1428519 - 1429469 + | Dehydrogenase Aflv_1419 1429539 - 1430345 + | ABC-type molybdenum transport system, ATPase component Aflv_1420 1430370 - 1430561 + | hypothetical protein Aflv_1421 1430572 - 1431447 + | Acetyltransferase TERM 2191 1431479 - 1431451 - T 100 -11.9 -5.01497 | opp_overlap 1431451 AGGATGAGATAAAAA TAAGCTGTTGG GCTTGTA CCAACAGCTTA TTTTCGTCTAGCTAC TERM 2192 1431451 - 1431479 + T 95 -11.9 -4.3586 | opp_overlap 1431451 AGGATGAGATAAAAA TAAGCTGTTGG GCTTGTA CCAACAGCTTA TTTTCGTCTAGCTAC Aflv_1422 1431871 - 1431494 - | hypothetical protein Aflv_1423 1432040 - 1432447 + | Transcriptional regulator, MerR family TERM 2193 1433679 - 1433669 - g 93 -4 -5.84432 | GACAACAGAAAAAAA TTCA GCT TGAA ACAATCCCAGCGGTT merA 1432444 - 1434060 + | Mercuric reductase TERM 2194 1434057 - 1434087 + T 80 -4.7 -5.20331 | gap 1, overlap 1434058 1434059 ATCTTGTTGTGCGGG AT-GAGCCACTTCC ATGT GGAAGCGGCTCTAG TTTTCTTTCTTATTT TERM 2195 1434058 - 1434086 + T 70 -8.2 -3.68538 | gap 1, overlap 1434057 1434059 TCTTGTTGTGCGGGA T-GAGCCACTTCC ATGT GGAAGCGGCTCTA GTTTTCTTTCTTATT TERM 2196 1434059 - 1434084 + T 93 -13.3 -3.38374 | overlap 1434058 1434057 CTTGTTGTGCGGGAT GAGCCACTTCC ATGT GGAAGCGGCTC TAGTTTTCTTTCTTA TERM 2197 1434478 - 1434508 + T 75 -10.4 -3.06696 | opp_overlap 1434489 TCGCTTTGTTTTATT TCCGCCACTAACCG CTC CGTTTGCTGGCGGA TGTGTTGGAGGAACG TERM 2198 1434642 - 1434657 + T 70 -2.5 -5.08824 | TTTCCCTTTTGGTGT CGGAT AAAACC GTCCG TTTTTTCGCTCGACC TERM 2199 1434779 - 1434797 + T 78 -3 -5.40625 | overlap 1434782 CAGAATAGCGAAGAG GGGGCTCT GTT AGCGCTTC TTTTTTCTCTAATAT TERM 2200 1434844 - 1434860 + T 73 -7.3 -3.9978 | opp_overlap 1434844 1434841, overlap 1434844 CCTTTCGTAAACGTA GGGAAAG TTC CTTTCTC TTCTTGCTTTTCTAG Aflv_1426 1435734 - 1435222 - | Transposase TERM 2201 1435453 - 1435421 - G 75 -5.6 -4.61284 | gap 1, overlap 1435416 1435425 AAGATGAAATGAAAA GCATCGCCTTCCTCG CCAT CAAGAAAGGCT-TGC ACCATCTTGGCATGA Aflv_1427 1436282 - 1435752 - | Transposase TERM 2202 1437711 - 1437736 + r 95 -4.7 -5.85244 | gap 1, opp_overlap 1437711 1437714 CAAAGTTCGATAACA GGAGGGCAGTGT AAA AC-CTGACCTTC TTTTTTATTTTCATT TERM 2203 1437893 - 1437840 - R 100 -9.8 -5.62045 | gap 1, opp_overlap 1437846, overlap 1437843 AGACAGAAGAAAAAA TTATAAGCCCGCAGCT-GCTCATAA ATACG TTAGTAACTAGCTGCGGGCTTATGA TGAAACAAACACTGT TERM 2204 1437890 - 1437843 - R 88 -11.5 -3.53281 | gap 1, opp_overlap 1437846, overlap 1437840 CAGAAGAAAAAATTA TAAGCCCGCAGCT-GCTCATAA ATACG TTAGTAACTAGCTGCGGGCTTA TGATGAAACAAACAC TERM 2205 1437846 - 1437887 + r 70 -8.7 -3.40403 | opp_overlap 1437843 1437840 AAGAAAAAATTATAA GCCCGCAGCTGCTCATAAA TACG TTAGTAACTAGCTGCGGGC TTATGATGAAACAAA Aflv_1429 1438133 - 1437933 - | hypothetical protein TERM 2206 1438303 - 1438249 - R 100 -14.7 -3.24161 | gap 1, opp_overlap 1438251 1438263, overlap 1438263 TAAACTTTTACAATA CAT-TGTGTAAAAAACAGACCTAAGG ATTA CCTCAGGTCTGTTTTTTACACTCATT TTCCAGCAGCTTTTG TERM 2207 1438251 - 1438301 + r 100 -15.1 -4.0896 | gap 1, opp_overlap 1438249 1438263, overlap 1438263 AACTTTTACAATACA T-TGTGTAAAAAACAGACCTAAGG ATTA CCTCAGGTCTGTTTTTTACACTCA TTTTCCAGCAGCTTT TERM 2208 1438263 - 1438288 + r 100 -11.9 -5.07053 | opp_overlap 1438249 1438263, overlap 1438251 ACATTGTGTAAAAAA CAGACCTAAGG ATTA CCTCAGGTCTG TTTTTTACACTCATT TERM 2209 1438288 - 1438263 - R 100 -14.1 -5.02476 | opp_overlap 1438263 1438251, overlap 1438249 ACATTGTGTAAAAAA CAGACCTAAGG ATTA CCTCAGGTCTG TTTTTTACACTCATT alsT 1439732 - 1438299 - | Na+/alanine symporter TERM 2210 1439560 - 1439573 + g 82 -3.1 -5.45802 | ATTTCTTGTTTTCCT TTTCC TTCA GGAGA TTTTTCTTTTAAGAC TERM 2211 1439960 - 1439972 + r 87 -3.5 -5.7946 | opp_overlap 1439957 1439958, overlap 1439959 ATCCTAGTACAATCT TTTTT TAA AAAAA TTTTTTTGTTAACAA TERM 2212 1439975 - 1439990 + r 83 -4.8 -5.2189 | opp_overlap 1439975 TTTTTTAAAAAAATT TTTTTG TTAA CAAAAA TTTTTTGGTGATTAA TERM 2213 1440033 - 1440016 - R 100 -7 -5.82172 | opp_overlap 1440016 1440032 ATTAACATAAAAAAA CACCCA CCATTC TGGGTG TTTTACAATTTGTGC TERM 2214 1440016 - 1440033 + r 73 -7 -4.26189 | opp_overlap 1440016, overlap 1440032 ATTAACATAAAAAAA CACCCA CCATTC TGGGTG TTTTACAATTTGTGC Aflv_1431 1441961 - 1440036 - | Nitric oxide reductase activation protein Aflv_1432 1442922 - 1441951 - | MoxR-like ATPase TERM 2215 1442624 - 1442610 - G 76 -2.8 -5.40072 | opp_overlap 1442610 GTTGTCCGAAAAAAA CTGACA GTG TTTCAG CTAATTTTGTTTTTC TERM 2216 1442897 - 1442886 - G 79 -3 -5.26316 | overlap 1442894 GTATTGTACAAAAAA CAAA TGAA TTTG TACAAACAAAAGAAA TERM 2217 1442939 - 1442914 - G 86 -5.7 -5.3689 | gap 1, opp_overlap 1442922, overlap 1442915 1442916 ACAAACAAAAGAAAA GTTTAACATAAT AAT ATTATGTT-AAC AAATGAATGAAAAAG TERM 2218 1442938 - 1442916 - G 70 -9.4 -2.84644 | opp_overlap 1442922, overlap 1442914 1442915 AAACAAAAGAAAAGT TTAACATAAT AAT ATTATGTTAA CAAATGAATGAAAAA Aflv_1433 1443241 - 1442969 - | hypothetical protein Aflv_1434 1443695 - 1443294 - | Transcriptional regulator PadR-like family TERM 2219 1443830 - 1443810 - R 100 -7.6 -6.34424 | opp_overlap 1443810 TTTGTAAAAAAAAAA GAAGAAGG TTCTC CCTCCTTC ATTTAAAAACAATTG Aflv_1435 1444806 - 1443829 - | Formyltetrahydrofolate hydrolase TERM 2220 1444823 - 1444786 - G 100 -11 -4.4204 | gap 1, opp_overlap 1444786 1444794, overlap 1444794 AACAATTATAACAAA TAAATAAATAGTCGAGA ACATA TCTCGACTATTT-TTTA CTTATTTAATATTTT TERM 2221 1444786 - 1444823 + g 79 -11 -3.07099 | gap 1, opp_overlap 1444786 1444794, overlap 1444794 AACAATTATAACAAA TAAATAAATAGTCGAGA ACATA TCTCGACTATTT-TTTA CTTATTTAATATTTT TERM 2222 1444816 - 1444794 - G 100 -10.7 -4.86861 | opp_overlap 1444794 1444786, overlap 1444786 TAACAAATAAATAAA TAGTCGAGA ACATA TCTCGACTA TTTTTTACTTATTTA TERM 2223 1444794 - 1444816 + g 100 -10.7 -5.4148 | opp_overlap 1444786 1444794, overlap 1444786 TAACAAATAAATAAA TAGTCGAGA ACATA TCTCGACTA TTTTTTACTTATTTA Aflv_1436 1445639 - 1444821 - | Formate/nitrite family of transporters speE 1445776 - 1446738 + | Spermidine synthase TERM 2224 1446760 - 1446715 - f 83 -9.1 -4.02571 | gap 1, opp_overlap 1446724 1446758, overlap 1446717 1446724 CAATTCATGAAAGAA CAGT-TACAACCGCAGTCGAAA TGA TTTCGGCTGCGGTTGTTGACAA AGAGATATTTTTGTA TERM 2225 1446758 - 1446717 - f 95 -13.9 -3.59653 | gap 1, opp_overlap 1446724, overlap 1446715 1446724 ATTCATGAAAGAACA GT-TACAACCGCAGTCGAAA TGA TTTCGGCTGCGGTTGTTGAC AAAGAGATATTTTTG TERM 2226 1446724 - 1446750 + F 100 -17.4 -3.61398 | opp_overlap 1446724 1446717 1446715 AAAGAACAGTTACAA CCGCAGTCGAAA TGA TTTCGGCTGCGG TTGTTGACAAAGAGA TERM 2227 1446750 - 1446724 - f 100 -15.2 -3.45634 | opp_overlap 1446724, overlap 1446717 1446715 AAAGAACAGTTACAA CCGCAGTCGAAA TGA TTTCGGCTGCGG TTGTTGACAAAGAGA rpmGA 1446829 - 1446978 + | Ribosomal protein L33 TERM 2228 1447006 - 1446971 - T 100 -15.6 -3.59738 | opp_overlap 1446976, overlap 1446976 CATTACATCGTGAAA CAAAATAACCCGCGGC ATAT GCCACGGGTTATTTTT AATGCCAATGAATGC TERM 2229 1447001 - 1446976 - T 100 -15.5 -4.87803 | opp_overlap 1446976, overlap 1446971 CATCGTGAAACAAAA TAACCCGCGGC ATAT GCCACGGGTTA TTTTTAATGCCAATG TERM 2230 1446976 - 1447001 + T 100 -13.3 -4.72986 | opp_overlap 1446971 1446976 CATCGTGAAACAAAA TAACCCGCGGC ATAT GCCACGGGTTA TTTTTAATGCCAATG treR 1447727 - 1447005 - | Transcriptional regulator, GntR family treA 1449419 - 1447755 - | Trehalose-6-phosphate hydrolase TERM 2231 1449150 - 1449161 + g 72 -7.2 -4.01158 | TACCATTTTTATGTT GCGC TTAT GCGC TTCTTTAATAAGATT TERM 2232 1449295 - 1449266 - G 76 -9.4 -3.57144 | gap 2, opp_overlap 1449265 1449264 GCGGTGACTCGTAAA TCGGGGT-GA-GCC AAAT GGCATCCACCCCGA GCATTTTTAAATAAT treP 1450824 - 1449421 - | Phosphotransferase system (PTS) trehalose-specific enzyme II, BC component TERM 2233 1451014 - 1450958 - R 93 -7.6 -5.52384 | opp_overlap 1450958 1450974 TTTTCACGAAAAAAA GATGTCC-CATATTGAAGTGTCCTCTGT CAG AGAGGAGACACTTC-ATACACGGACATC TTCTTCTACTTACTT Aflv_1442 1451409 - 1451020 - | hypothetical protein parC 1453871 - 1451475 - | DNA topoisomerase IV subunit A TERM 2234 1451699 - 1451734 + g 86 -2.5 -5.86061 | overlap 1451701 GAAGTTGTCCTCGTT TCGCACGAGTAGATA GTTCGA TCTCTGCTCGCGCAA TTTTTTTTGCTGCCC TERM 2235 1453443 - 1453459 + g 75 -5.1 -4.89966 | opp_overlap 1453440 CGTATCATCGAAGTT CGGTACA AAC TCTACCG TTTCTTTTTCAATAT parE 1455849 - 1453876 - | DNA topoisomerase IV subunit B TERM 2236 1455126 - 1455138 + g 71 -4.1 -4.84363 | TAAAAAATACAACGG GATGT AGC ACGTC TTTTTCCTCGTTTAA TERM 2237 1455971 - 1455942 - R 79 -5.1 -5.06414 | opp_overlap 1455945, overlap 1455945 CGTCGTGAAGAAAAA GAACGACCATT ACAAAAAG AATGGTCGTTT TTACCGTGTGAGCGC TERM 2238 1455968 - 1455945 - R 79 -6.8 -4.63592 | opp_overlap 1455945, overlap 1455942 CGTGAAGAAAAAGAA CGACCATT ACAAAAAG AATGGTCG TTTTTACCGTGTGAG TERM 2239 1455945 - 1455968 + r 79 -6.8 -4.64766 | opp_overlap 1455945 1455942 CGTGAAGAAAAAGAA CGACCATT ACAAAAAG AATGGTCG TTTTTACCGTGTGAG Aflv_1445 1456376 - 1455972 - | Predicted CoA-binding protein Aflv_1446 1456503 - 1457093 + | Predicted membrane protein TERM 2240 1457137 - 1457163 + G 100 -10.2 -5.41143 | opp_overlap 1457133 1457137 1457138, overlap 1457138 TGTAACGAAAATGAA TGCTTTGCTTCA AGA TGAAGCGGAGCG TTTTTTTGCGACATA TERM 2241 1457138 - 1457162 + G 95 -11.5 -3.83963 | opp_overlap 1457133 1457137 1457138, overlap 1457137 GTAACGAAAATGAAT GCTTTGCTTCA AGA TGAAGCGGAGC GTTTTTTTGCGACAT Aflv_1447 1457084 - 1458457 + | Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized domain TERM 2242 1458578 - 1458537 - T 100 -14 -4.49756 | gap 2, opp_overlap 1458537 TTTCAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTATTTTGTTATGG TERM 2243 1458537 - 1458578 + T 100 -11.8 -4.92812 | gap 2, opp_overlap 1458537 TTTCAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTATTTTGTTATGG Aflv_1448 1459140 - 1458580 - | hypothetical protein Aflv_1449 1459887 - 1459144 - | Predicted secreted lysophospholipase protein, SGNH-hydrolase superfamily TERM 2244 1459402 - 1459387 - G 77 -6.2 -4.6635 | AAATGCTGAAGAAAA TGGATT GTAT AATCCA ATAAGCACAATATAA TERM 2245 1459944 - 1459915 - R 100 -9.5 -5.18371 | opp_overlap 1459915 1459913 1459921 1459923, overlap 1459923 CTCTATAAAAGAAAA GACAAAAATGACA CGGT CATCATTTTTGTC TGTATATGTTATTCT TERM 2246 1459933 - 1459923 - R 85 -5.4 -5.34632 | opp_overlap 1459921 1459915 1459913 1459923, overlap 1459915 AAGAAAAGACAAAAA TGAC ACG GTCA TCATTTTTGTCTGTA Aflv_1450 1460525 - 1459953 - | Cu2+-binding oxygen sensor (SCO1/SenC/PrrC family) Aflv_1451 1461380 - 1460538 - | hypothetical protein TERM 2247 1461460 - 1461470 + r 75 -2.6 -5.24129 | CCCTGTATGTCGTCG TTTT CAT AAAA TTTTTTGTAAAAAAA TERM 2248 1461515 - 1461486 - R 100 -10.8 -5.40072 | opp_overlap 1461485 1461486 1461488 TTTTTTGTAAAAAAA GAGCTGATTTGC ACATTA GCAAAACAGCTC CTTCGTCATTTATGC TERM 2249 1461486 - 1461515 + r 76 -10.8 -2.60798 | opp_overlap 1461486, overlap 1461485 1461488 TTTTTTGTAAAAAAA GAGCTGATTTGC ACATTA GCAAAACAGCTC CTTCGTCATTTATGC Aflv_1452 1461776 - 1461525 - | hypothetical protein ilvA 1463142 - 1461874 - | Threonine dehydratase TERM 2250 1463275 - 1463258 - R 79 -6.9 -4.56791 | opp_overlap 1463258, overlap 1463252 ATTTAAAAAGATAAA GCCCGCC GATT AGCGAGC TCGTTCATATATGCA dfrA 1463755 - 1463267 - | Dihydrofolate reductase thyB 1464563 - 1463769 - | Thymidylate synthase TERM 2251 1464704 - 1464665 - R 79 -5.7 -4.89477 | opp_overlap 1464667, overlap 1464666 1464667 TCTTCAATAATAAAA CCGCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGCTT CATTTGTTTTTCTTT TERM 2252 1464703 - 1464666 - R 74 -9.2 -3.52963 | opp_overlap 1464667, overlap 1464665 1464667 CTTCAATAATAAAAC CGCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGCT TCATTTGTTTTTCTT TERM 2253 1464702 - 1464667 - R 83 -12.7 -2.71055 | opp_overlap 1464667, overlap 1464666 1464665 TTCAATAATAAAACC GCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGC TTCATTTGTTTTTCT TERM 2254 1464667 - 1464702 + r 84 -10.5 -3.8823 | opp_overlap 1464667 1464666 1464665 TTCAATAATAAAACC GCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGC TTCATTTGTTTTTCT tatC 1465433 - 1464681 - | Twin-arginine protein translocation pathway component TatAD TERM 2255 1465372 - 1465361 - G 81 -4.4 -5.3798 | opp_overlap 1465361 CAACAACAATAAAAA TACG TTTG CGTA ATTCTTCTAAGTGTT TERM 2256 1465483 - 1465465 - R 91 -11 -4.62069 | opp_overlap 1465464 1465463 TTGCCATGTTAAAAA CGGCAACA TAC CGTTGCCG CCTTATCGTTGAATT tatA 1465688 - 1465506 - | Twin-arginine protein translocation pathway component TatAD Aflv_1458 1465780 - 1466142 + | URI-family nuclease TERM 2257 1466169 - 1466143 - T 100 -13.9 -4.11585 | opp_overlap 1466147, overlap 1466147 ATCTATTATAAATAA TAAACGAGGGA TGGAT TCCCTCGTTTA GCTTGCCTTTTCATA TERM 2258 1466165 - 1466147 - T 91 -10.3 -4.63952 | opp_overlap 1466147, overlap 1466143 ATTATAAATAATAAA CGAGGGA TGGAT TCCCTCG TTTAGCTTGCCTTTT TERM 2259 1466147 - 1466165 + T 84 -10.3 -3.80083 | opp_overlap 1466143 1466147 ATTATAAATAATAAA CGAGGGA TGGAT TCCCTCG TTTAGCTTGCCTTTT gltT 1467393 - 1466167 - | Proton/sodium-glutamate symport protein TERM 2260 1467562 - 1467581 + r 89 -12.2 -3.71148 | opp_overlap 1467562 TTTTACACAAAAAAA CTACCACG CAAT CGTGGTAG TTTACATCCGTTTTG TERM 2261 1467581 - 1467562 - R 100 -12.2 -5.71712 | opp_overlap 1467562 TTTTACACAAAAAAA CTACCACG CAAT CGTGGTAG TTTACATCCGTTTTG Aflv_1460 1467723 - 1467583 - | hypothetical protein Aflv_1462 1468525 - 1467749 - | SAM-dependent methyltransferase Aflv_1461 1467742 - 1467879 + | hypothetical protein TERM 2262 1468565 - 1468547 - TR 93 -6.7 -5.46706 | ACCTCAAAAGAAAAA GGATGTC AATTG GACACCC TCAGCAATGTTTTTC Aflv_1463 1469051 - 1468566 - | hypothetical protein metA 1469136 - 1470053 + | Homoserine O-succinyltransferase TERM 2263 1470055 - 1470074 + F 90 -9.3 -5.14163 | opp_overlap 1470054 ATGTATGGGAGTAAT TCCTCGC CGCACA GCGAGGA TTTTTATTGCTACAT TERM 2264 1470364 - 1470374 + G 78 -4 -5.10208 | CCGATATGTATGGTC GAAA ACG TTTC TTTTTATTCGGGTTA TERM 2265 1471249 - 1471259 + G 75 -3.2 -5.09762 | TCGCTGGATTTGGAG TGGG ATT CTCA TTTTCTTTGTTACCG TERM 2266 1471318 - 1471334 + G 77 -3.7 -5.10497 | overlap 1471306 GTTTTCGTGGAACAG CTAATTC AAC GAATTCG TTTTTTCGCTCACTT mdr 1470081 - 1471652 + | Multidrug-efflux transporter padR 1471654 - 1472208 + | Transcriptional regulator PadR-like family TERM 2267 1472193 - 1472224 + TF 73 -10.2 -2.87325 | opp_overlap 1472194 1472196, overlap 1472192 1472196 AAAACTAAAAGAAAA AGGGGGAAGCTTAT AACA ATGAGCTTCCCTCA CTTCTTCTGCAACAT TERM 2268 1472223 - 1472194 - Tf 100 -9.3 -5.56372 | opp_overlap 1472193 1472192 1472196, overlap 1472196 AAACTAAAAGAAAAA GGGGGAAGCTTAT AACA ATGAGCTTCCCTC ACTTCTTCTGCAACA TERM 2269 1472221 - 1472196 - Tf 73 -10.5 -2.91657 | opp_overlap 1472196 1472193 1472192, overlap 1472194 ACTAAAAGAAAAAGG GGGAAGCTTAT AACA ATGAGCTTCCC TCACTTCTTCTGCAA TERM 2270 1472196 - 1472221 + TF 83 -12.7 -2.68806 | opp_overlap 1472194 1472196, overlap 1472193 1472192 ACTAAAAGAAAAAGG GGGAAGCTTAT AACA ATGAGCTTCCC TCACTTCTTCTGCAA Aflv_1467 1472962 - 1472222 - | SAM-dependent methyltransferase TERM 2271 1472936 - 1472920 - Gf 77 -4.5 -5.00616 | opp_overlap 1472920 CCCTTTTTGAAAAAA TAAACAT GTT ACGTTTA TTGTAGCAGAAAGGA Aflv_1468 1472961 - 1473092 + | hypothetical protein TERM 2272 1473154 - 1473184 + Tr 91 -9.7 -4.58773 | opp_overlap 1473154 1473160, overlap 1473160 CTCGCCAAAAATGAT GAAAAAGTCGGGC TGATC GCCCGACTCATTC TTTTCGTTTGCTCAC TERM 2273 1473184 - 1473154 - TR 81 -11.9 -2.53903 | opp_overlap 1473154 1473160, overlap 1473160 CTCGCCAAAAATGAT GAAAAAGTCGGGC TGATC GCCCGACTCATTC TTTTCGTTTGCTCAC TERM 2274 1473160 - 1473178 + Tr 83 -11.7 -3.15276 | opp_overlap 1473154 1473160, overlap 1473154 AAAAATGATGAAAAA GTCGGGC TGATC GCCCGAC TCATTCTTTTCGTTT TERM 2275 1473178 - 1473160 - TR 100 -11.7 -4.88129 | opp_overlap 1473160 1473154, overlap 1473154 AAAAATGATGAAAAA GTCGGGC TGATC GCCCGAC TCATTCTTTTCGTTT Aflv_1469 1473854 - 1473372 - | Demethylmenaquinone methyltransferase Aflv_1470 1474414 - 1473914 - | Predicted membrane-bound metal-dependent hydrolase Aflv_1471 1474587 - 1475687 + | Uncharacterized membrane protein TERM 2276 1475673 - 1475700 + F 95 -6.3 -5.62288 | opp_overlap 1475673 TCAAAACTTAAAAAA GGTATCCCTAG CTAATC TTTGGGATACC TTTTTGTTTTATTCG TERM 2277 1475700 - 1475673 - f 85 -5.6 -5.2696 | opp_overlap 1475673 TCAAAACTTAAAAAA GGTATCCCTA GCTAATCT TTGGGATACC TTTTTGTTTTATTCG tlpA 1475750 - 1477456 + | Methyl-accepting chemotaxis protein TERM 2278 1477453 - 1477481 + T 100 -16.1 -4.84761 | TGAATTATTTCGTAC GTAGCCGCGCATA TTG TATGCACGGCTAC TTTTTCTCAAAATAT Aflv_1473 1478368 - 1477478 - | Uroporphyrinogen-III synthase TERM 2279 1478814 - 1478827 + G 71 -2.4 -5.20328 | ATCATTTCAACCATT CAAG CTGTGA CTTG TTTCTTTTTTTACCG kinB 1478478 - 1479788 + | Signal transduction histidine kinase TERM 2280 1479771 - 1479795 + T 87 -6.5 -5.20735 | opp_overlap 1479753 AAGCGCTCTCGATTT GAACAAGTGAG TTA TTGACTTGTTC TTTCTTTTTTATTGA TERM 2281 1479857 - 1479839 - T 86 -7.4 -5.09225 | opp_overlap 1479839 AGTTTATTTAAAAAA GGTCGTGT GTA AAACGACC TTTTACAAATGTTTT TERM 2282 1479839 - 1479857 + T 76 -7.4 -4.16146 | opp_overlap 1479839 AGTTTATTTAAAAAA GGTCGTGT GTA AAACGACC TTTTACAAATGTTTT Aflv_1475 1480300 - 1479860 - | Flavodoxin TERM 2283 1480395 - 1480421 + r 71 -6.5 -4.28971 | opp_overlap 1480382 1480398, overlap 1480397 1480398 TATTTTTTTAAGAAA AAACGCGCGAT TTTTT ATCGCGCGCTC TTTATCTATTATTCT TERM 2284 1480397 - 1480419 + r 76 -9.1 -3.72553 | opp_overlap 1480398, overlap 1480395 1480398 TTTTTTTAAGAAAAA ACGCGCGAT TTTTT ATCGCGCGC TCTTTATCTATTATT TERM 2285 1480418 - 1480398 - R 100 -12.6 -5.4505 | opp_overlap 1480398 1480397 1480395 TTTTTTAAGAAAAAA CGCGCGAT TTTTT ATCGCGCG CTCTTTATCTATTAT TERM 2286 1480398 - 1480418 + r 83 -12.6 -2.81905 | opp_overlap 1480398, overlap 1480397 1480395 TTTTTTAAGAAAAAA CGCGCGAT TTTTT ATCGCGCG CTCTTTATCTATTAT fruA 1482292 - 1480430 - | Phosphotransferase system (PTS) fructose-specific enzyme II, ABC subunits TERM 2287 1480560 - 1480546 - G 71 -4.2 -4.91109 | overlap 1480547 TCGGGATTACAAAAA TTCCAC CAT GTGGAG CTGGGAGACCGATGC TERM 2288 1480792 - 1480776 - G 84 -10.9 -3.66356 | ATCGCTAATCCTAAA GGTGGAA CCA TTCCACC TGCCATAATAGCTGC fruK 1483209 - 1482283 - | Fructose-1-phosphate kinase fruR 1483961 - 1483206 - | Transcriptional regulator of sugar metabolism TERM 2289 1484120 - 1484102 - R 100 -9.6 -5.69262 | opp_overlap 1484097 1484102 TCAGAAAAATAAAAA CTGCCTCA CGA TGAGACAG TTTCGTTTTCATTTC TERM 2290 1484102 - 1484120 + r 76 -7.4 -4.29472 | opp_overlap 1484102, overlap 1484097 TCAGAAAAATAAAAA CTGCCTCA CGA TGAGACAG TTTCGTTTTCATTTC Aflv_1479 1485936 - 1484107 - | Multidomain signal transduction protein, diguanylate cyclase/phosphodiesterase (contains GGDEF and HD-GYP domains) TERM 2291 1485142 - 1485152 + g 82 -2.4 -5.58454 | opp_overlap 1485142 AAAAGCAATCGAAAA CTGG CCA CCCG TTTTTTTCGTCTCCC TERM 2292 1485797 - 1485752 - G 72 -7.9 -3.79162 | gap 1 TCCATAGAAAATGAA CTTTTATTTTGAA-CGATTTGA ATT TCAAAACGACTCAAAATAAACG CGGAGATAGATAAAA TERM 2293 1486000 - 1486018 + r 80 -4.5 -5.24531 | opp_overlap 1486002, overlap 1486002 AAACATATACATTAA AAGGGAG TTATC CTCCCTC TTTTTTCTACCCAAT TERM 2294 1486002 - 1486016 + r 76 -7.1 -4.25873 | opp_overlap 1486002, overlap 1486000 ACATATACATTAAAA GGGAG TTATC CTCCC TCTTTTTTCTACCCA TERM 2295 1486016 - 1486002 - R 78 -7.1 -4.41956 | opp_overlap 1486002 1486000 ACATATACATTAAAA GGGAG TTATC CTCCC TCTTTTTTCTACCCA Aflv_1480 1486740 - 1486123 - | Uncharacterized membrane protein TERM 2296 1486370 - 1486396 + g 74 -10.2 -2.5806 | opp_overlap 1486394, overlap 1486369 TCTTTTCCTAAAACG GCTTGTGTCGCT TCA AGTGATACAGGC ATTCTACCACCGTTT TERM 2297 1486806 - 1486817 + r 75 -3 -5.3321 | opp_overlap 1486806 AAACGGTTATATTAA CAAA ATAT TTTG TTTTTCTTATTGATT glpK 1488515 - 1486992 - | Glycerol kinase glpP 1489164 - 1488610 - | Glycerol-3-phosphate responsive antiterminator (mRNA-binding) Aflv_1483 1489565 - 1489161 - | hypothetical protein TERM 2298 1489691 - 1489654 - R 77 -9.4 -3.44527 | opp_overlap 1489660 1489664, overlap 1489656 1489660 1489664 TATTGACGACTATAA CATAAATAAAGCCCAG ATTTTA CTGGACTTTATTCATA CACGTGATGAGAAGG TERM 2299 1489689 - 1489656 - R 75 -9.8 -3.29273 | opp_overlap 1489660 1489664, overlap 1489654 1489660 1489664 TTGACGACTATAACA TAAATAAAGCCCAG ATTTTA CTGGACTTTATTCA TACACGTGATGAGAA TERM 2300 1489685 - 1489660 - R 82 -8.4 -4.29304 | opp_overlap 1489660 1489664, overlap 1489656 1489654 1489664 CGACTATAACATAAA TAAAGCCCAG ATTTTA CTGGACTTTA TTCATACACGTGATG TERM 2301 1489681 - 1489664 - R 74 -4.8 -4.70921 | opp_overlap 1489664 1489660, overlap 1489660 1489656 1489654 TATAACATAAATAAA GCCCAG ATTTTA CTGGAC TTTATTCATACACGT Aflv_1484 1489940 - 1489683 - | hypothetical protein TERM 2302 1490017 - 1490005 - H 79 -3.5 -5.40072 | CCTCCTCTAAAAAAA TTTTT TGA AAAAA TCGCCTTTTTGTCTT cspD 1490181 - 1490381 + | Cold shock protein, CspA family TERM 2303 1490417 - 1490435 + F 100 -11 -5.4833 | opp_overlap 1490417 ATAGCTCGACGAAAA GGCCAGCA ATA TGCTGGTC TTTTTTATTACATAC TERM 2304 1490435 - 1490417 - f 82 -8.8 -4.26344 | opp_overlap 1490417 ATAGCTCGACGAAAA GGCCAGCA ATA TGCTGGTC TTTTTTATTACATAC Aflv_1486 1490491 - 1490772 + | hypothetical protein TERM 2305 1490771 - 1490809 + T 89 -4.5 -5.63517 | opp_overlap 1490773 1490776, overlap 1490772 1490779 CGATCCACCACATGT AATGATGAGGTGTCCCG TATCT CGGGGCACCTTGTTACG TTTTTTGTTTCACAA TERM 2306 1490772 - 1490808 + T 75 -8 -3.97026 | opp_overlap 1490773 1490776, overlap 1490771 1490779 GATCCACCACATGTA ATGATGAGGTGTCCCG TATCT CGGGGCACCTTGTTAC GTTTTTTGTTTCACA TERM 2307 1490779 - 1490801 + T 93 -12.7 -3.87569 | opp_overlap 1490776 1490773, overlap 1490772 1490771 CACATGTAATGATGA GGTGTCCCG TATCT CGGGGCACC TTGTTACGTTTTTTG Aflv_1487 1491641 - 1490982 - | Ribonuclease HI family protein TERM 2308 1491562 - 1491552 - G 78 -5.4 -5.00884 | opp_overlap 1491552 ATCTTCTGCAAAAAA CAGA GCC TCTG TCACTTCCATCTCTG Aflv_1488 1491715 - 1492434 + | Uncharacterized member of the PurR regulon TERM 2309 1492472 - 1492443 - f 90 -10.9 -4.24726 | opp_overlap 1492443 AGAATAATGGTAAAA TGTTGTATGAGAC TTCG GTCTTATACAACA TTTTTTTGTAAAGGA TERM 2310 1492443 - 1492472 + F 100 -13.1 -5.60993 | opp_overlap 1492443 AGAATAATGGTAAAA TGTTGTATGAGAC TTCG GTCTTATACAACA TTTTTTTGTAAAGGA Aflv_1489 1492495 - 1493391 + | Permease of the drug/metabolite transporter (DMT) superfamily TERM 2311 1493401 - 1493373 - Tf 100 -7.5 -5.64421 | gap 1, overlap 1493376 ATGGCAAAGAAAAAA GAA-CGCTCGCC TCTCAT AGCGAGCGCTTC CACCTACTTATTACA TERM 2312 1493397 - 1493376 - Tf 93 -9.4 -4.88687 | overlap 1493373 GCAAAGAAAAAAGAA CGCTCGCC TCTCAT AGCGAGCG CTTCCACCTACTTAT Aflv_1490 1493922 - 1493386 - | hypothetical protein TERM 2313 1493969 - 1493959 - gR 71 -6.8 -4.0896 | AAATCGTGGGCAAAA CGCT CCA AGCG TCAATCCACAAGGAT sspL 1493915 - 1494055 + | Small acid-soluble spore protein TERM 2314 1494079 - 1494057 - TR 100 -12.8 -4.91778 | opp_overlap 1494050 1494057 1494060 CAAACACAAAATAAA GAAGAGAGCA GAT CGCTCTCTTC TTATCGTTTTAACTT TERM 2315 1494057 - 1494079 + Tr 89 -12.1 -3.70033 | opp_overlap 1494057, overlap 1494050 1494060 CAAACACAAAATAAA GAAGAGAGC AGATC GCTCTCTTC TTATCGTTTTAACTT TERM 2316 1494060 - 1494076 + Tr 75 -8 -3.96497 | opp_overlap 1494057, overlap 1494057 1494050 ACACAAAATAAAGAA GAGAGC AGATC GCTCTC TTCTTATCGTTTTAA citB 1496788 - 1494080 - | Aconitase A sspO 1496958 - 1497107 + | Small acid-soluble spore protein TERM 2317 1497131 - 1497101 - f 100 -14.2 -5.43974 | opp_overlap 1497108, overlap 1497105 AAAACGAAAGAAAAA TCAATAATCCCGCT TGA AGCGGGATTATTCA GACTGTTGAAAAACG TERM 2318 1497127 - 1497105 - f 100 -15 -3.98991 | opp_overlap 1497108, overlap 1497101 CGAAAGAAAAATCAA TAATCCCGCT TGA AGCGGGATTA TTCAGACTGTTGAAA TERM 2319 1497108 - 1497124 + F 90 -12.3 -3.65201 | opp_overlap 1497105 1497101 AAGAAAAATCAATAA TCCCGCT TGA AGCGGGA TTATTCAGACTGTTG TERM 2320 1497145 - 1497167 + F 100 -13.6 -5.62288 | opp_overlap 1497145 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTTAA TERM 2321 1497167 - 1497145 - f 100 -13.6 -4.59109 | opp_overlap 1497145 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTTAA TERM 2322 1498473 - 1498434 - g 88 -10.1 -4.13995 | gap 1, overlap 1498437 TTTGCAGAAAGTAAA GAACTCCACGGACTTCGT TTTGC ACGATA-CCGCGGAGTTC CATACGTACAGATTC Aflv_1494 1497222 - 1498583 + | Transposase TERM 2323 1498633 - 1498597 - T 100 -9.7 -5.47846 | opp_overlap 1498600 1498606, overlap 1498600 1498606 AAGGAAAAAAGAAAA GAAGAAAAAGTTCAC GAGGAAA GTGAACTTTTTCTTG ACTCCCCACTTTTTC TERM 2324 1498600 - 1498630 + T 81 -11.4 -3.06312 | opp_overlap 1498600 1498597 1498606, overlap 1498606 GAAAAAAGAAAAGAA GAAAAAGTTCAC GAGGAAA GTGAACTTTTTC TTGACTCCCCACTTT TERM 2325 1498630 - 1498600 - T 95 -11.4 -4.75934 | opp_overlap 1498600 1498606, overlap 1498597 1498606 GAAAAAAGAAAAGAA GAAAAAGTTCAC GAGGAAA GTGAACTTTTTC TTGACTCCCCACTTT TERM 2326 1498606 - 1498624 + T 76 -4.6 -5.10461 | opp_overlap 1498606 1498600 1498597, overlap 1498600 AGAAAAGAAGAAAAA GTTCAC GAGGAAA GTGAAC TTTTTCTTGACTCCC TERM 2327 1498624 - 1498606 - T 86 -4.6 -5.47964 | opp_overlap 1498600 1498606, overlap 1498600 1498597 AGAAAAGAAGAAAAA GTTCAC GAGGAAA GTGAAC TTTTTCTTGACTCCC TERM 2328 1498689 - 1498653 - T 93 -13.9 -3.02511 | opp_overlap 1498660 1498663, overlap 1498663 CCCACTTTTTCAACA CTTTGAATAATCCCGCT TGA AGCGGGATTATTCATAC ATGTTAACTTCGTCG TERM 2329 1498660 - 1498682 + T 100 -15 -3.2218 | opp_overlap 1498653 1498663, overlap 1498663 TTTCAACACTTTGAA TAATCCCGCT TGA AGCGGGATTA TTCATACATGTTAAC TERM 2330 1498663 - 1498679 + T 90 -12.3 -3.74762 | opp_overlap 1498653 1498663, overlap 1498660 CAACACTTTGAATAA TCCCGCT TGA AGCGGGA TTATTCATACATGTT TERM 2331 1498679 - 1498663 - T 90 -12.3 -3.65201 | opp_overlap 1498663 1498660, overlap 1498653 CAACACTTTGAATAA TCCCGCT TGA AGCGGGA TTATTCATACATGTT Aflv_1495 1498997 - 1498680 - | hypothetical protein sspP 1499035 - 1499187 + | Small acid-soluble spore protein TERM 2332 1499173 - 1499229 + F 81 -6.8 -4.8236 | gap 1, opp_overlap 1499183 1499190, overlap 1499184 1499190 CAAAAGCATAACTCA AGTCACGAT-ATGTAAAAGAGCTGACA CAAC TGTCAGCTCTTTTACTTGATTCTGCCA TTGTTTTTTTACATA TERM 2333 1499218 - 1499183 - f 100 -16.4 -2.83112 | opp_overlap 1499173 1499184 1499190, overlap 1499190 ACTCAAGTCACGATA TGTAAAAGAGCTGACA CAAC TGTCAGCTCTTTTACT TGATTCTGCCATTGT TERM 2334 1499184 - 1499217 + F 100 -19.9 -3.45832 | opp_overlap 1499183 1499190, overlap 1499173 1499190 CTCAAGTCACGATAT GTAAAAGAGCTGACA CAAC TGTCAGCTCTTTTAC TTGATTCTGCCATTG TERM 2335 1499211 - 1499190 - f 100 -13.1 -4.24948 | opp_overlap 1499184 1499173 1499190, overlap 1499183 TCACGATATGTAAAA GAGCTGACA CAAC TGTCAGCTC TTTTACTTGATTCTG TERM 2336 1499190 - 1499211 + F 100 -13.1 -4.51197 | opp_overlap 1499190 1499183, overlap 1499184 1499173 TCACGATATGTAAAA GAGCTGACA CAAC TGTCAGCTC TTTTACTTGATTCTG Aflv_1497 1499218 - 1499703 + | hypothetical protein TERM 2337 1499687 - 1499734 + T 70 -8.1 -3.66178 | gap 1, opp_overlap 1499682 1499699, overlap 1499699 AATACGAACATTTGC TAACAAAAAAAAGCTAATC-GC CTGTT GCTGATTAGCTTTTTTCTTTTA TTTCACGTTGGAGGC TERM 2338 1499699 - 1499722 + T 100 -6.1 -5.95449 | gap 1, opp_overlap 1499699, overlap 1499687 TGCTAACAAAAAAAA GCTAATC-GC CTGTT GCTGATTAGC TTTTTTCTTTTATTT TERM 2339 1499722 - 1499699 - T 100 -6.1 -6.09888 | gap 1, opp_overlap 1499687 1499699 TGCTAACAAAAAAAA GCTAATC-GC CTGTT GCTGATTAGC TTTTTTCTTTTATTT Aflv_1498 1500191 - 1499718 - | Membrane protein involved in cytochrome C biogenesis TERM 2340 1499914 - 1499897 - G 73 -2.7 -5.13741 | overlap 1499907 TTAAGCCAACAAAAA TAAAAGC GAAC GCTTTTG AACGTTGTAAATAAA yneI 1500581 - 1500207 - | CheY-like receiver domain protein ccdA 1501324 - 1500593 - | Cytochrome c biogenesis protein TERM 2341 1500963 - 1500951 - G 70 -5.5 -4.45168 | overlap 1500952 TGTTGAAAAGATAAA CGACG ATC CGTCA TTAAAAAGGTCGGCT TERM 2342 1501404 - 1501386 - R 85 -6.7 -5.0538 | opp_overlap 1501386 TTCCATGCTAAAAAA GACACTC GTTTT GAGTGCC TTACCTTTATTTCAA Aflv_1501 1501623 - 1501411 - | hypothetical protein TERM 2343 1501756 - 1501700 - R 76 -4.6 -5.14965 | opp_overlap 1501711 1501714 1501719, overlap 1501714 1501719 ATGTTCAGTAAAAAA TCTTCATTCGATAATAAAACGGGGAG ATATG CTCCCCGTTTTATTATTTACCTAACA ATGCTTTGACTCGCG TERM 2344 1501711 - 1501745 + r 100 -18.9 -3.65351 | opp_overlap 1501700 1501714 1501719, overlap 1501714 1501719 AAAATCTTCATTCGA TAATAAAACGGGGAG ATATG CTCCCCGTTTTATTA TTTACCTAACAATGC TERM 2345 1501714 - 1501742 + r 100 -16.2 -3.96216 | opp_overlap 1501714 1501700 1501719, overlap 1501711 1501719 ATCTTCATTCGATAA TAAAACGGGGAG ATATG CTCCCCGTTTTA TTATTTACCTAACAA TERM 2346 1501742 - 1501714 - R 100 -16.2 -3.32963 | opp_overlap 1501711 1501714 1501719, overlap 1501700 1501719 ATCTTCATTCGATAA TAAAACGGGGAG ATATG CTCCCCGTTTTA TTATTTACCTAACAA TERM 2347 1501719 - 1501737 + r 100 -11.7 -5.011 | opp_overlap 1501719 1501714 1501700, overlap 1501714 1501711 CATTCGATAATAAAA CGGGGAG ATATG CTCCCCG TTTTATTATTTACCT TERM 2348 1501737 - 1501719 - R 100 -11.7 -4.78237 | opp_overlap 1501714 1501711 1501719, overlap 1501714 1501700 CATTCGATAATAAAA CGGGGAG ATATG CTCCCCG TTTTATTATTTACCT tkt 1503779 - 1501743 - | Transketolase TERM 2349 1503878 - 1503853 - R 80 -4.7 -5.19261 | AAACTGACGAAAAAA GAGAACATCCA TAGT CGTATGTTCCC CATGATATACGCATT Aflv_1503 1504122 - 1503892 - | hypothetical protein Aflv_1504 1504823 - 1504143 - | Site-specific recombinase, DNA invertase Aflv_1505 1505144 - 1504839 - | LysM domain protein lexA 1505265 - 1505906 + | SOS-response transcriptional repressor (RecA-mediated autopeptidase) TERM 2350 1505946 - 1505926 - T 100 -11.2 -5.25805 | opp_overlap 1505926 1505945 AAGAAACGGAAAAAA GCTAACGG AAAAA CCGTTAGC TTTTTTAGTAAAGGC TERM 2351 1505926 - 1505946 + T 95 -11.2 -5.14563 | opp_overlap 1505926, overlap 1505945 AAGAAACGGAAAAAA GCTAACGG AAAAA CCGTTAGC TTTTTTAGTAAAGGC glnA 1507285 - 1505951 - | Glutamine synthetase TERM 2352 1507317 - 1507335 + r 86 -7.6 -5.14563 | opp_overlap 1507317 1507332 AAAATGAAAAGATCA TTTATGTT AAA AACATAAA TTTTTTAATGAAAAA TERM 2353 1507365 - 1507352 - R 78 -3.8 -5.26875 | TTTTTAATGAAAAAA GCGA GCGATA TCGC CTTGACGAAGTGAAG glnR 1507744 - 1507340 - | Transcriptional regulator, MerR family TERM 2354 1507758 - 1507770 + r 80 -6.3 -4.79384 | ATGTCGACCCCTCCT TACGT AAT ACGTA TTTTCATTTTATTCT Aflv_1509 1509113 - 1507845 - | Cystathionine beta-lyase family protein involved in aluminum resistance TERM 2355 1508312 - 1508299 - G 71 -6.7 -4.17516 | TGCAAACTATATAAA GAAGC GCCT GCTTC TCCCCCGATTCCTGG TERM 2356 1508400 - 1508412 + g 71 -4.8 -4.72272 | TCCCGTTTTTGCTAA TCCG CCACC CGGA TTTTTAATAAGCGAG TERM 2357 1508968 - 1508956 - G 86 -7.7 -4.67982 | opp_overlap 1508955 1508956 GTTGATGGAATAAAA TGAGC ATC GCTCA CTTGATGGTGACGAA Aflv_1510 1510374 - 1509127 - | GTP-binding protein protease modulator TERM 2358 1510069 - 1510090 + g 88 -10.9 -3.80516 | gap 1 GTCTAAAATAAGCTG CGTGCG-GTC AAT GACACGCACG TTTAATACCTTCGTT TERM 2359 1510782 - 1510764 - g 78 -5.2 -5.00616 | overlap 1510765 TGTTTCCGCAAAAAA TGCTACCA CAT TGGCAGCG GTGGGGGAACTTTTT TERM 2360 1510781 - 1510765 - g 75 -8.7 -3.60048 | overlap 1510764 GTTTCCGCAAAAAAT GCTACCA CAT TGGCAGC GGTGGGGGAACTTTT Aflv_1511 1510520 - 1511128 + | Predicted membrane protein TERM 2361 1511161 - 1511126 - T 95 -15.6 -2.87319 | opp_overlap 1511127, overlap 1511131 TTGAAGGCAGGAAAC TGAAACCGGATGTCTC GATG GAAACATCCGGTTTCT TTTTATTCTTCCCAC TERM 2362 1511127 - 1511160 + T 100 -16.9 -5.29445 | opp_overlap 1511126 1511131 TGAAGGCAGGAAACT GAAACCGGATGTCTC GATG GAAACATCCGGTTTC TTTTTATTCTTCCCA TERM 2363 1511156 - 1511131 - T 100 -14.1 -3.87149 | opp_overlap 1511127, overlap 1511126 GGCAGGAAACTGAAA CCGGATGTCTC GATG GAAACATCCGG TTTCTTTTTATTCTT Aflv_1512 1512336 - 1511164 - | Acetyl-CoA acetyltransferase mmgB 1513178 - 1512333 - | 3-hydroxyacyl-CoA dehydrogenase TERM 2364 1512381 - 1512403 + g 77 -8.5 -3.96148 | gap 1, overlap 1512398 TCGTCCAAGATGTCC CGCTTCGACA AGTT TG-CGAAGCG TTTGTGGTGGACGGA TERM 2365 1512869 - 1512887 + g 73 -2.5 -5.08824 | gap 1 GTTTCGTATAACGGT CAAGCTGT TCAA ACA-CTTG TTTTTTGAGTGGCAA mmgC 1514996 - 1513854 - | Acyl-CoA dehydrogenase TERM 2366 1514126 - 1514155 + g 78 -9.3 -3.6715 | gap 1, overlap 1514127 CTAAGGCAATTTCCG TCG-CCATTTCCGC CAA GCGGAACTGGACGG TTTGAAATTGGCTAA TERM 2367 1514127 - 1514154 + g 75 -10.6 -2.79968 | gap 1, overlap 1514126 TAAGGCAATTTCCGT CG-CCATTTCCGC CAA GCGGAACTGGACG GTTTGAAATTGGCTA TERM 2368 1514510 - 1514523 + g 74 -8.1 -3.96892 | opp_overlap 1514509 1514510, overlap 1514522 CGACGAGGACTAAAT CGGCA TGAA TGCCG TTTGTAATGAACGTT TERM 2369 1514522 - 1514536 + g 70 -2.8 -5.055 | opp_overlap 1514510 1514509, overlap 1514510 AATCGGCATGAATGC CGTTTG TAA TGAACG TTTTTTGCCCGTTGA TERM 2370 1514884 - 1514894 + g 70 -5.4 -4.44355 | overlap 1514881 CGCCAAAAATCACGT GGAA TGA TTCC TTGTTTTTCCCATTC Aflv_1515 1516568 - 1515009 - | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II TERM 2371 1516419 - 1516434 + g 70 -7.6 -3.65426 | TCCTTTTCGCACACC CGCTTT TAAG AAAGCG TTTGCAAGTTTGTCC TERM 2372 1516645 - 1516610 - R 70 -7.9 -3.66742 | overlap 1516608 1516639 TCGATATAAATAATA TTTTTTATTTTCAGA TTATAT TCTGCAAATAAAAAA GAAACCCTTCTTTAC TERM 2373 1516694 - 1516674 - R 100 -12.7 -5.72616 | opp_overlap 1516674 ACTCACATAAAAAAA TAGGAAAGG CTC CCTTTCCTA TTCATTCAACAACTA TERM 2374 1516674 - 1516694 + r 87 -12.7 -3.34013 | opp_overlap 1516674 ACTCACATAAAAAAA TAGGAAAGG CTC CCTTTCCTA TTCATTCAACAACTA spoVK 1517625 - 1516696 - | Stage V sporulation protein K TERM 2375 1517735 - 1517712 - R 100 -10.3 -5.26875 | opp_overlap 1517710 1517708 1517712 TGCCTAACGAAAAAA TCGCCCACC GATATA GGTGAGCGA TATATCTTACTCAAT Aflv_1517 1517966 - 1517742 - | Uncharacterized host factor I protein miaA 1518937 - 1518002 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 2376 1519045 - 1519021 - R 70 -3 -5.03314 | TTCATTTTGAAAAAA TGTGAAAA AAACATCCA TTTTCACA TGACGCGTTTAAACA mutL 1520867 - 1519041 - | DNA mismatch repair enzyme (predicted ATPase) TERM 2377 1519814 - 1519829 + g 74 -7.6 -3.93819 | CTTTCACGATATGTT CAAACG AAAA CGTTTG TTGTTCTGCTTTCGT mutS 1523445 - 1520881 - | Mismatch repair ATPase (MutS family) TERM 2378 1523537 - 1523490 - R 77 -9.5 -3.47227 | opp_overlap 1523493 1523494 1523503 1523533, overlap 1523503 CTTCAATTATTATAA CAAAAAATAAAAACTAGGAAG AACAAA CTTCCTAGTTTTTATTGCTTC CTTCTTGAAGAAGCT TERM 2379 1523493 - 1523534 + r 74 -9 -3.53444 | opp_overlap 1523490 1523503, overlap 1523494 1523503 1523533 CAATTATTATAACAA AAAATAAAAACTAGGAAG AACAAA CTTCCTAGTTTTTATTGC TTCCTTCTTGAAGAA TERM 2380 1523494 - 1523533 + r 83 -12.5 -2.71745 | opp_overlap 1523490 1523503, overlap 1523493 1523503 AATTATTATAACAAA AAATAAAAACTAGGAAG AACAAA CTTCCTAGTTTTTATTG CTTCCTTCTTGAAGA TERM 2381 1523503 - 1523524 + r 93 -8.8 -5.20534 | opp_overlap 1523490 1523503, overlap 1523494 1523493 AACAAAAAATAAAAA CTAGGAAG AACAAA CTTCCTAG TTTTTATTGCTTCCT TERM 2382 1523524 - 1523503 - R 100 -8.8 -5.84011 | opp_overlap 1523503 1523494 1523493, overlap 1523490 AACAAAAAATAAAAA CTAGGAAG AACAAA CTTCCTAG TTTTTATTGCTTCCT cotE 1524090 - 1523521 - | Outer spore coat protein TERM 2383 1523805 - 1523819 + g 77 -8.6 -4.03978 | opp_overlap 1523804 TCAACGGAATGACAT CGGTAT AAG ATACCG TTTCTGTGAGCACTT TERM 2384 1523965 - 1523940 - G 75 -8.3 -3.75292 | opp_overlap 1523958, overlap 1523948 ACCGATGATTAATAA TCCAACAACCG AGCA CGCTCGTTGGA CGATGTTGCGCGGAA TERM 2385 1524215 - 1524195 - R 100 -7.6 -6.23317 | opp_overlap 1524195 ACAAAAATAAAAAAA GAGCCCAT GTAAA ATGGACTC TTTAATGGCAATGGC Aflv_1522 1524648 - 1524217 - | hypothetical protein TERM 2386 1524472 - 1524486 + g 74 -5 -4.86033 | TTTTCCGTAATGTTG CAAGTT TAC AGCTTG TTTTTGTAACGATTT Aflv_1523 1526233 - 1524650 - | 2-methylthioadenine synthetase TERM 2387 1524900 - 1524916 + g 77 -3.7 -5.16572 | opp_overlap 1524903, overlap 1524903 TTTACTAATGCATTT AAACGTT GTA AACGTTC TTTTTTCACTTCCAT TERM 2388 1524903 - 1524913 + g 73 -5.4 -4.67173 | opp_overlap 1524903, overlap 1524900 ACTAATGCATTTAAA CGTT GTA AACG TTCTTTTTTCACTTC TERM 2389 1526340 - 1526319 - R 88 -8.7 -4.72272 | opp_overlap 1526319 TTTTTCCATGAAAAA GAGGATGGC TTTC ACCACCCTC TTTTTTCTTACATAA TERM 2390 1526319 - 1526340 + r 89 -5.8 -5.4833 | opp_overlap 1526319 TTTTTCCATGAAAAA GAGGATGG CTTTCA CCACCCTC TTTTTTCTTACATAA Aflv_1524 1527235 - 1526348 - | 2-oxoglutarate ferredoxin oxidoreductase, beta subunit Aflv_1525 1528953 - 1527217 - | 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit TERM 2391 1529129 - 1529110 - R 100 -5.8 -5.81412 | opp_overlap 1529116, overlap 1529120 CCTATTGAAAAAAAA TTGCAACA TATT TGTTACAA AAATGTGAATTTTTC Aflv_1526 1530115 - 1529156 - | Zn-dependent dipeptidase, microsomal dipeptidase TERM 2392 1530156 - 1530126 - R 95 -11.3 -4.95758 | opp_overlap 1530129, overlap 1530129 AGCATATGATAAAAA TAACCTGTTTGCT ATACA AGCAAACAGGTTT ATGTGCATTAACGCG TERM 2393 1530153 - 1530129 - R 100 -13 -4.57057 | opp_overlap 1530129, overlap 1530126 ATATGATAAAAATAA CCTGTTTGCT ATACA AGCAAACAGG TTTATGTGCATTAAC TERM 2394 1530129 - 1530153 + r 100 -13 -4.09108 | opp_overlap 1530126 1530129 ATATGATAAAAATAA CCTGTTTGCT ATACA AGCAAACAGG TTTATGTGCATTAAC spoVS 1530424 - 1530164 - | Stage V sporulation protein S required for dehydratation of the spore core and assembly of the coat Aflv_1528 1531414 - 1530554 - | Calcineurin-like phosphoesterase TERM 2395 1531444 - 1531423 - R 90 -10.2 -4.44797 | opp_overlap 1531423 TTATCAATACGAAAA GCTACTCC AAACGA GGAGTAGC TTTATTTCGCATATT TERM 2396 1531423 - 1531444 + r 90 -10.2 -4.4572 | opp_overlap 1531423 TTATCAATACGAAAA GCTACTCC AAACGA GGAGTAGC TTTATTTCGCATATT Aflv_1529 1533011 - 1531446 - | Predicted HD superfamily hydrolase TERM 2397 1532652 - 1532663 + g 78 -4.4 -5.24129 | overlap 1532643 CTGTTGTCTTTCATT GAGA GAAT TCTC TTTTTTCTCAAGCAA TERM 2398 1533215 - 1533185 - R 100 -16.4 -4.65263 | opp_overlap 1533192, overlap 1533192 ATTTTCTAAAACAAA GTAAAAAGAGACAC AAC GTGCCTCTTTTTAC TCTAAGAAGTCTAAA TERM 2399 1533208 - 1533192 - R 90 -8.7 -5.1517 | opp_overlap 1533192, overlap 1533185 AAAACAAAGTAAAAA GAGACAC AAC GTGCCTC TTTTTACTCTAAGAA TERM 2400 1533192 - 1533208 + r 80 -6.5 -4.8048 | opp_overlap 1533192 1533185 AAAACAAAGTAAAAA GAGACAC AAC GTGCCTC TTTTTACTCTAAGAA recA 1534387 - 1533212 - | RecA/RadA recombinase (multifunctional SOS repair regulator) TERM 2401 1533306 - 1533320 + gr 73 -2.8 -5.08255 | TCACGTGCAATTTCT TCCATG ATA TGTGGA TTTTCTTTTAAAAAT TERM 2402 1534293 - 1534283 - GR 86 -6.8 -5.04249 | opp_overlap 1534283 CTTGCAAAAAATAAA GCAG TGA CTGC TACTTATTACTATAC TERM 2403 1534352 - 1534339 - GR 85 -2.4 -5.7946 | TTGCCAAGAAAAAAA CGAA TAGATG TTCG TAAATCAATGCAACA Aflv_1531 1535589 - 1534357 - | Competence-damage inducible protein TERM 2404 1535117 - 1535093 - GR 78 -2.1 -5.4505 | opp_overlap 1535067, overlap 1535094 TTTTGCAATAAAAAA GGACGTCCATA TTT CATGAACATCG GTTGCATTTCTTTTG pgsA 1536220 - 1535612 - | Phosphatidylglycerophosphate synthase ymfM 1537080 - 1536220 - | Uncharacterized HTH XRE-family DNA-binding protein TERM 2405 1536968 - 1536982 + g 73 -5.7 -4.44277 | TTTCCTTGTTCAATT GCGAT CAAAT ATCGC TTTTGGATTTTAGTG Aflv_1534 1537881 - 1537090 - | ACT domain containing protein TERM 2406 1538025 - 1538051 + r 77 -9.4 -3.52668 | opp_overlap 1538026, overlap 1538026 GATAAACATAGTAAA ACAAGCTGGCGA ATG TCACCAGCTTGC TTATATCGCTCGCTT TERM 2407 1538050 - 1538026 - R 100 -15.1 -4.47397 | opp_overlap 1538025 1538026 ATAAACATAGTAAAA CAAGCTGGCGA ATG TCACCAGCTTG CTTATATCGCTCGCT TERM 2408 1538026 - 1538050 + r 90 -12.9 -2.71119 | opp_overlap 1538026, overlap 1538025 ATAAACATAGTAAAA CAAGCTGGCGA ATG TCACCAGCTTG CTTATATCGCTCGCT Aflv_1535 1538319 - 1538065 - | hypothetical protein Aflv_1536 1539092 - 1538379 - | Dehydrogenase TERM 2409 1538908 - 1538885 - G 75 -5.2 -4.74801 | overlap 1538889 CAATTGGATGAAAAA GAGACGACAC TAAC GTATCGACCC CAGAAGGATGAGATA TERM 2410 1538974 - 1538988 + g 74 -4.3 -4.93898 | overlap 1538970 TGCTCCACTAACGAT TGAAC AGATC GTTCA TTTTTGTAGTAATGT Aflv_1537 1540379 - 1539099 - | Predicted Zn-dependent peptidase TERM 2411 1540186 - 1540199 + g 71 -2.3 -5.19212 | opp_overlap 1540181, overlap 1540187 TCTAAAAAATGGGCG ATGCC ATCC GGCAC TTTTTTCATGCTCGT Aflv_1538 1541764 - 1540376 - | Predicted Zn-dependent peptidase TERM 2412 1540520 - 1540500 - GR 70 -9.7 -2.55213 | opp_overlap 1540500, overlap 1540496 CACTCATCTAATGGA CGTTGTCGC GTC GCGATAACG TTATGATAAGAAATT TERM 2413 1540500 - 1540520 + gr 91 -11.9 -3.40899 | opp_overlap 1540500 1540496 CACTCATCTAATGGA CGTTGTCGC GTC GCGATAACG TTATGATAAGAAATT TERM 2414 1541487 - 1541498 + gr 73 -5.8 -4.4767 | TTCATCGACGGATGT CGCT CGGT AGCG TTTTGTAATACATAG Aflv_1539 1542620 - 1541700 - | Cysteine synthase TERM 2415 1541960 - 1541944 - GH 71 -5 -4.65078 | opp_overlap 1541949 1541950 ATAGGCGGAATAAAA CCTGGC CCAGT GCCTGG AATTTTATGTGGCCC Aflv_1540 1542733 - 1543125 + | Rhodanese-related sulfurtransferase TERM 2416 1543123 - 1543140 + T 91 -9.9 -4.56597 | opp_overlap 1543123 GGCGAAGTTGAAAAA TAGGAGG GAAG CCTCCTA TTTTTCAAACGAAAA TERM 2417 1543140 - 1543123 - T 93 -9.9 -4.66833 | opp_overlap 1543123 GGCGAAGTTGAAAAA TAGGAGG GAAG CCTCCTA TTTTTCAAACGAAAA topB 1545282 - 1543138 - | DNA topoisomerase TERM 2418 1544321 - 1544337 + g 75 -5.1 -4.85177 | TGTGAATCGGAGCGT GGATACG ATA CATATCC TTTTTGATATAGTTT TERM 2419 1545305 - 1545331 + r 73 -6.6 -4.26189 | opp_overlap 1545308, overlap 1545308 CCCCTTGACGAAAAG AAACCTGCTC AACTAGC GAGCAGGTTA TTTTGCAGTTTCTAC TERM 2420 1545328 - 1545308 - R 89 -9 -4.72007 | opp_overlap 1545305 1545308 CTTGACGAAAAGAAA CCTGCTCA ACTAG CGAGCAGG TTATTTTGCAGTTTC TERM 2421 1545308 - 1545328 + r 82 -8.3 -4.2354 | opp_overlap 1545308, overlap 1545305 CTTGACGAAAAGAAA CCTGCTC AACTAGC GAGCAGG TTATTTTGCAGTTTC spoIIIJ 1546111 - 1545329 - | Stage III sporulation protein J essential for sigma-G activity TERM 2422 1546123 - 1546082 - G 79 -11.1 -2.94099 | gap 1, opp_overlap 1546081 1546084 1546113, overlap 1546113 TTTTTTCACGATATA GCTCCTCCTTGTTTGTCTTA TGA TAAG-CAAACAAGGAGCATC CTTCCTTCTTCATCA TERM 2423 1546084 - 1546121 + g 93 -12.3 -2.90373 | gap 1, opp_overlap 1546082 1546113, overlap 1546081 1546113 TTTTCACGATATAGC TCCTCCTTGTTTGTCTTA TGA TAAG-CAAACAAGGAGCA TCCTTCCTTCTTCAT Aflv_1543 1546386 - 1546099 - | hypothetical protein tnrA 1546719 - 1546426 - | Transcriptional regulator, MerR family Aflv_1545 1546902 - 1547078 + | hypothetical protein Aflv_1546 1547011 - 1547175 + | hypothetical protein TERM 2424 1547741 - 1547777 + F 100 -5.9 -5.72622 | GGGCTAAAAATACAT CGGTATGTTTCACTT CATCTAT ACGTGAGGCATGCCG TTTTTTGTTTCTAAA Aflv_1547 1547804 - 1548163 + | hypothetical protein TERM 2425 1548243 - 1548193 - f 100 -17.2 -4.26076 | opp_overlap 1548198, overlap 1548198 TTATGGTCAGTAAAA GATAAGCCGGAAATATTTTTCGAT CCG ATCGAAAAATGTTTCCGGCTTTTT TGTTGAATATAAAAA TERM 2426 1548198 - 1548238 + F 100 -23.7 -5.49234 | opp_overlap 1548193 1548198 GTCAGTAAAAGATAA GCCGGAAATATTTTTCGAT CCG ATCGAAAAATGTTTCCGGC TTTTTTGTTGAATAT TERM 2427 1548238 - 1548198 - f 100 -21.5 -3.99481 | opp_overlap 1548198, overlap 1548193 GTCAGTAAAAGATAA GCCGGAAATATTTTTCGAT CCG ATCGAAAAATGTTTCCGGC TTTTTTGTTGAATAT TERM 2428 1548582 - 1548567 - g 73 -5.4 -4.62783 | CATTGATCGTAAAAA CGCAAC AGGT ATTGCG GCAACATATGGATCA Aflv_1548 1548283 - 1549272 + | Predicted permease TERM 2429 1549277 - 1549293 + T 100 -12.3 -5.79595 | opp_overlap 1549277 GGTTCTATTAAAAAA GCAAGGG GCT CCCTTGC TTTTTTATTTTCGAA TERM 2430 1549293 - 1549277 - T 100 -12.3 -5.14563 | opp_overlap 1549277 GGTTCTATTAAAAAA GCAAGGG GCT CCCTTGC TTTTTTATTTTCGAA Aflv_1549 1551049 - 1549298 - | hypothetical protein TERM 2431 1549369 - 1549351 - G 70 -7.4 -3.8591 | opp_overlap 1549350 1549351, overlap 1549354 TTGCATAACGAAGAA GAAGCGCA AAC TGCTCTTC GTTTATGTCATCTTT Aflv_1550 1551095 - 1552222 + | Glycine/D-amino acid oxidase (deaminating) Aflv_1551 1552254 - 1552904 + | Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling Aflv_1552 1552901 - 1553938 + | Glycerol-1-phosphate dehydrogenase NAD(P) TERM 2432 1553991 - 1553961 - f 90 -10.5 -4.46926 | gap 1, opp_overlap 1553960 TATTTCATGACAAAA TCGCCCACCCTACT GTTA AGGA-GGTGGGCGA GTTGAATCAAACGTT csgA 1553984 - 1554247 + | Sporulation-specific SASP protein TERM 2433 1554257 - 1554280 + T 82 -6 -4.88786 | ATTTGAGTAACAATG CCTAGCGC CTCGATTA GTGCTAGG TTTATTTCTTTTCAT Aflv_1554 1555632 - 1554511 - | Transposase TERM 2434 1554919 - 1554929 + g 78 -5.4 -4.94058 | CATAAAACGGTTTTC TTGC CCA GCAA TTTTCTTTAGCTTGC Aflv_1556 1556616 - 1556239 - | hypothetical protein TERM 2435 1556861 - 1556843 - R 91 -8.1 -5.20633 | opp_overlap 1556841 1556843 AAAAATATATAAAAA GGTGCCC GTCAT GGACACC TCTTTCTCTTTCTAC Aflv_1557 1558582 - 1556873 - | Signal transduction histidine kinase TERM 2436 1557459 - 1557447 - G 75 -3.3 -5.1361 | opp_overlap 1557457, overlap 1557457 ATAAATGCTAAAAAA CCGTG AAT CACCG CAAGCGGATTGCGAA TERM 2437 1559056 - 1559031 - R 85 -9.1 -4.14392 | opp_overlap 1559031 1559034, overlap 1559034 GTTCAACCGTTAAAA TAAGAGGGG CGCTCATC CCCCTCTTA TTTGAGTAATCTTAA TERM 2438 1559031 - 1559056 + r 76 -9.1 -3.71607 | opp_overlap 1559031 1559034, overlap 1559034 GTTCAACCGTTAAAA TAAGAGGGG CGCTCATC CCCCTCTTA TTTGAGTAATCTTAA TERM 2439 1559053 - 1559034 - R 71 -6.4 -4.19577 | opp_overlap 1559031 1559034, overlap 1559031 CAACCGTTAAAATAA GAGGGG CGCTCATC CCCCTC TTATTTGAGTAATCT Aflv_1558 1559284 - 1559054 - | Thioredoxin family protein TERM 2440 1559100 - 1559110 + g 81 -5.4 -5.09521 | GATAGCAACTTTCCT GTTG ATA CAAC TTTTTCATTTATTAC Aflv_1559 1560244 - 1559297 - | Predicted permease TERM 2441 1560011 - 1559996 - G 74 -4.7 -4.78753 | TGAACACGAACAAAA TGGTG ATACGA CACCA AGTAGAGCCGCTAAT TERM 2442 1560179 - 1560165 - G 90 -2.1 -6.02919 | overlap 1560166 TCATAAATAAAAAAA TGAAG TGCCC CTCCA AACTTTGAAGTAACC Aflv_1560 1560599 - 1560237 - | Transcriptional regulator, ArsR family Aflv_1561 1560866 - 1561294 + | Predicted permease TERM 2443 1561319 - 1561298 - T 93 -10.9 -4.90917 | AAACTCAAGTAAAAA GAGCCATCT TTAA AGATGGCCC CTACATATAAAGCAT mtlD 1562459 - 1561320 - | Mannitol-1-phosphate dehydrogenase TERM 2444 1562125 - 1562138 + g 78 -2.4 -5.58074 | overlap 1562120 ATGATATGAACAGGT CGAT CTGTTA ATCG TTTTTTTAATCCTTC mtlA 1562898 - 1562461 - | Phosphotransferase system (PTS) mannitol-specific IIA component TERM 2445 1562515 - 1562527 + g 71 -4.1 -4.89477 | opp_overlap 1562515, overlap 1562510 TGTCGTTGCAGAAAT CATCT TTT GGATG TTTTCTTCTTCCGAG TERM 2446 1562673 - 1562685 + g 71 -3.4 -5.06451 | CAATTGATAAACCCG CTTG CTTCA CAAG TTTTTTCGCATCCTC mtlR 1564974 - 1562899 - | Transcriptional antiterminator of mannitol metabolism TERM 2447 1565150 - 1565132 - R 87 -6 -5.23765 | TAAATAAGACAAAAA GGTAAGCA AAT CACTTACC TCAGACTGTTGACAA TERM 2448 1565160 - 1565203 + r 100 -16.4 -2.57358 | opp_overlap 1565168, overlap 1565163 1565168 CTTACCTCAGACTGT TGACAAAATGGTTGTAAGAC AGTT GTCTTACAACCATTTTATTA CATTTTGATATTTGT TERM 2449 1565163 - 1565200 + r 100 -15.9 -3.41195 | opp_overlap 1565168, overlap 1565160 1565168 ACCTCAGACTGTTGA CAAAATGGTTGTAAGAC AGTT GTCTTACAACCATTTTA TTACATTTTGATATT TERM 2450 1565168 - 1565195 + r 100 -15.8 -4.77719 | opp_overlap 1565168, overlap 1565163 1565160 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTCTTACAACCA TTTTATTACATTTTG TERM 2451 1565195 - 1565168 - R 100 -15.8 -4.38154 | opp_overlap 1565168 1565163 1565160 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTCTTACAACCA TTTTATTACATTTTG Aflv_1565 1566714 - 1565146 - | Transposase TERM 2452 1566660 - 1566692 + g 100 -9.1 -5.48514 | opp_overlap 1566663, overlap 1566661 1566662 TATACCTATATATTA AAACAGCTTGTCGAC TTT GTCGACAAGCTGACC TTTTTGTTTGTTCGT TERM 2453 1566661 - 1566691 + g 100 -12.6 -3.86668 | opp_overlap 1566663, overlap 1566660 1566662 ATACCTATATATTAA AACAGCTTGTCGAC TTT GTCGACAAGCTGAC CTTTTTGTTTGTTCG TERM 2454 1566662 - 1566690 + g 100 -16.1 -2.90374 | opp_overlap 1566663, overlap 1566661 1566660 TACCTATATATTAAA ACAGCTTGTCGAC TTT GTCGACAAGCTGA CCTTTTTGTTTGTTC TERM 2455 1566689 - 1566663 - G 100 -19.6 -4.39568 | opp_overlap 1566662 1566661 1566660 ACCTATATATTAAAA CAGCTTGTCGAC TTT GTCGACAAGCTG ACCTTTTTGTTTGTT mtlA 1568107 - 1566707 - | Phosphotransferase system (PTS) mannitol-specific IIBC component Aflv_1567 1568313 - 1569098 + | Uncharacterized protein with SCP/PR1 domains TERM 2456 1569128 - 1569168 + T 93 -12.6 -3.9461 | opp_overlap 1569134, overlap 1569134 TTTGCAGCGAACTAT CAAAAACACCGCCGCCTT CATAC AAGGCGGCGGTGTTATGC TTATTGTTCAGACAC TERM 2457 1569134 - 1569162 + T 100 -20.4 -3.64882 | opp_overlap 1569134, overlap 1569128 GCGAACTATCAAAAA CACCGCCGCCTT CATAC AAGGCGGCGGTG TTATGCTTATTGTTC TERM 2458 1569162 - 1569134 - T 100 -20.4 -4.81083 | opp_overlap 1569134 1569128 GCGAACTATCAAAAA CACCGCCGCCTT CATAC AAGGCGGCGGTG TTATGCTTATTGTTC Aflv_1568 1571229 - 1569169 - | Uncharacterized membrane protein kipR 1572081 - 1571296 - | Transcriptional regulator (IclR family) TERM 2459 1571413 - 1571400 - G 72 -8.1 -3.85698 | opp_overlap 1571399 1571403 TCGTCGGTCCAGAAA CGCTG ACCG CAGCG ATCACTTGTTTCGTA TERM 2460 1572113 - 1572087 - R 77 -8.7 -3.9644 | opp_overlap 1572085 1572087 1572087, overlap 1572088 1572090 CCTTTAACATAATAA CGAGGGCACTC GTATA GAATGCCCTCC GTGTTACTATTGTTT TERM 2461 1572112 - 1572088 - R 82 -12.2 -2.97382 | opp_overlap 1572087 1572087 1572085, overlap 1572087 1572090 CTTTAACATAATAAC GAGGGCACTC GTATA GAATGCCCTC CGTGTTACTATTGTT Aflv_1570 1574306 - 1572120 - | Malate synthase TERM 2462 1572711 - 1572724 + g 75 -2.4 -5.37593 | overlap 1572721 TGTATTCGCTCCTGC TTGC GGATGA GCAA TTTTTTGCTTTAGCA TERM 2463 1574438 - 1574415 - R 71 -5.2 -4.55295 | opp_overlap 1574414 1574418, overlap 1574418 TTTCTTACAAATAAA TAAGGCGGGA AAGG TTCCGCCTTC ACTTGTAAATTCCAT TERM 2464 1574418 - 1574435 + r 70 -9.1 -3.2496 | opp_overlap 1574418 1574415, overlap 1574414 CTTACAAATAAATAA GGCGGGA AAGG TTCCGCC TTCACTTGTAAATTC TERM 2465 1574435 - 1574418 - R 76 -6.9 -4.38748 | opp_overlap 1574414 1574418, overlap 1574415 CTTACAAATAAATAA GGCGGGA AAGG TTCCGCC TTCACTTGTAAATTC Aflv_1571 1575087 - 1574437 - | Transcriptional regulator, TetR/AcrR family Aflv_1572 1575992 - 1575099 - | ABC-type multidrug transport system, permease component TERM 2466 1575761 - 1575776 + gr 78 -4 -5.16841 | opp_overlap 1575729 1575761 AGGGCAACGATTGAA GAAGTT TTGT GACTTC TTTTTGTTGCTCTGC Aflv_1573 1576776 - 1575904 - | ABC-type multidrug transport system, ATPase component Aflv_1574 1576928 - 1577773 + | Membrane protease subunit, stomatin/prohibitin Aflv_1575 1577754 - 1577906 + | hypothetical protein TERM 2467 1577985 - 1577946 - T 100 -14.6 -5.94743 | gap 1, opp_overlap 1577953, overlap 1577953 GAAAAAAAATAAAAA GTAAAAAGGTGTCCCAAAA ACT TTCTGGGACACCTTTC-AC TTCAATCATATGAAA TERM 2468 1577979 - 1577953 - T 100 -16 -5.24003 | opp_overlap 1577953, overlap 1577946 AATAAAAAGTAAAAA GGTGTCCCAAAA ACT TTCTGGGACACC TTTCACTTCAATCAT TERM 2469 1577953 - 1577979 + T 95 -13.8 -3.77219 | opp_overlap 1577953 1577946 AATAAAAAGTAAAAA GGTGTCCCAAAA ACT TTCTGGGACACC TTTCACTTCAATCAT Aflv_1576 1578596 - 1578009 - | Cell wall hydrolyse involved in spore germination Aflv_1577 1578874 - 1579578 + | Regulator of cell morphogenesis and NO signaling, scdA family (2 C-terminal HHE domains) Aflv_1578 1579703 - 1580152 + | Transcriptional regulator, MarR family Aflv_1579 1580176 - 1580607 + | Predicted membrane protein TERM 2470 1580766 - 1580776 + G 71 -6.8 -4.11216 | GATGATATCATCGCG CCAC AAC GTGG TTTTGGAGCTCACCC Aflv_1580 1580619 - 1581323 + | Pirin-related protein TERM 2471 1581326 - 1581358 + T 73 -7 -4.17048 | gap 1, overlap 1581327 1581328 1581330 TGATTTACCGTAGTT G-CCAGCTTGCCCAT GAAA ACGGGCAAGCTGATC TTCTTTTGGAAAAGA TERM 2472 1581327 - 1581356 + T 83 -10.7 -3.68435 | overlap 1581326 1581328 1581330 GATTTACCGTAGTTG CCAGCTTGCCCAT GAAA ACGGGCAAGCTGA TCTTCTTTTGGAAAA TERM 2473 1581328 - 1581355 + T 93 -14.2 -2.80579 | overlap 1581327 1581326 1581330 ATTTACCGTAGTTGC CAGCTTGCCCAT GAAA ACGGGCAAGCTG ATCTTCTTTTGGAAA TERM 2474 1581330 - 1581353 + T 78 -11 -2.94356 | overlap 1581328 1581327 1581326 TTACCGTAGTTGCCA GCTTGCCCAT GAAA ACGGGCAAGC TGATCTTCTTTTGGA TERM 2475 1581638 - 1581600 - T 76 -8.9 -3.64103 | opp_overlap 1581603, overlap 1581603 TATCCATATGTTAAA TCAGTATAGTGGCAAGC TTCCC GCTTGCCACTATGCTTC TTTCGGCAACCAAAA TERM 2476 1581603 - 1581635 + T 100 -17.2 -3.90744 | opp_overlap 1581600 1581603 CCATATGTTAAATCA GTATAGTGGCAAGC TTCCC GCTTGCCACTATGC TTCTTTCGGCAACCA TERM 2477 1581635 - 1581603 - T 100 -15 -2.93585 | opp_overlap 1581603, overlap 1581600 CCATATGTTAAATCA GTATAGTGGCAAGC TTCCC GCTTGCCACTATGC TTCTTTCGGCAACCA Aflv_1581 1582820 - 1581630 - | Permease of the major facilitator superfamily TERM 2478 1582053 - 1582039 - G 70 -2.8 -4.96845 | ATAAAAACAAATAAA TAAAGC TGC GCCTCA CGAATGGAAATATCG TERM 2479 1582526 - 1582510 - G 88 -3 -5.82036 | gap 1, overlap 1582511 1582513 AGAACAAAGAAAAAA TTAGGCG CAAA CGCC-AA TCCGATCATCCCTAA TERM 2480 1582931 - 1582907 - R 100 -12.2 -4.87665 | opp_overlap 1582907 GCTTACTCATAAAAA GCGCCTCATC ACATA GATGAGACGC TTTTACACCTTATTG TERM 2481 1582907 - 1582931 + r 89 -10 -4.16921 | opp_overlap 1582907 GCTTACTCATAAAAA GCGCCTCATC ACATA GATGAGACGC TTTTACACCTTATTG Aflv_1582 1584550 - 1582952 - | Formyltetrahydrofolate synthetase Aflv_1583 1584746 - 1584606 - | hypothetical protein TERM 2482 1584765 - 1584715 - G 88 -10.9 -3.84996 | gap 1, opp_overlap 1584726, overlap 1584718 1584726 AAGACAGAACTTAAA CAATGA-AAAAACACTTTTTCAGC AATC GCCAAAAAAGTGTTTTCGTCATTA CGGCAACCGATGACC TERM 2483 1584762 - 1584718 - G 89 -10.4 -4.03769 | gap 1, opp_overlap 1584726, overlap 1584715 1584726 ACAGAACTTAAACAA TGA-AAAAACACTTTTTCAGC AATC GCCAAAAAAGTGTTTTCGTCA TTACGGCAACCGATG TERM 2484 1584753 - 1584726 - G 100 -10 -5.4148 | opp_overlap 1584726, overlap 1584718 1584715 TAAACAATGAAAAAA CACTTTTTCAGC AATC GCCAAAAAAGTG TTTTCGTCATTACGG TERM 2485 1584726 - 1584753 + g 70 -5.6 -4.3534 | opp_overlap 1584726 1584718 1584715 TAAACAATGAAAAAA CACTTTTTCAGC AATC GCCAAAAAAGTG TTTTCGTCATTACGG Aflv_1584 1585680 - 1584763 - | Predicted oxidoreductase TERM 2486 1585779 - 1585769 - R 81 -2.6 -5.58522 | CACACAAAATAAAAA TATA CAA TATA CCCATAAAATTCCCC TERM 2487 1585831 - 1585789 - R 70 -5.7 -4.46757 | gap 1, overlap 1585790 AATATACCCATAAAA TTCCCCTCCCTTATGC-CTT TGAC AAGAGCATAAGGGATGAAAC GCGTTTCGATGCAAT TERM 2488 1585830 - 1585790 - R 72 -9.2 -3.2697 | gap 1, overlap 1585789 ATATACCCATAAAAT TCCCCTCCCTTATGC-CTT TGAC AAGAGCATAAGGGATGAAA CGCGTTTCGATGCAA Aflv_1585 1586620 - 1585853 - | Predicted membrane protein Aflv_1586 1587243 - 1586617 - | Predicted integral membrane protein Aflv_1587 1587530 - 1587240 - | Transcriptional regulator, ArsR family TERM 2489 1587598 - 1587577 - R 79 -3.1 -5.48825 | TATCATCTAAAAAAA TAGACATTT AGAC AAATTTCTA ATTACATAATATACA TERM 2490 1587662 - 1587640 - R 90 -8.5 -4.95957 | opp_overlap 1587640 1587643 GAAATCAAGTAAAAA GAAGAAGCC GCTCG AGCTTCTTC TTACATCCCTACTAT Aflv_1588 1587991 - 1587674 - | hypothetical protein Aflv_1589 1588336 - 1588013 - | Membrane transporter of cations and cationic drugs Aflv_1590 1589094 - 1588333 - | Glycerophosphoryl diester phosphodiesterase TERM 2491 1589096 - 1589077 - G 72 -7.8 -3.90112 | opp_overlap 1589077 CCTTTCGTAATGAAA GGATGCCC TAGT GGACACCC TTCTTATTTATCGTT Aflv_1591 1590423 - 1589104 - | ABC-type glycerol-3-phosphate transport system, periplasmic component Aflv_1592 1591252 - 1590440 - | ABC-type glycerol-3-phosphate transport system, permease component Aflv_1593 1592127 - 1591249 - | ABC-type glycerol-3-phosphate transport system permease component msmX 1593199 - 1592099 - | ABC-type glycerol-3-phosphate transport system, ATPase component TERM 2492 1592463 - 1592453 - GR 70 -2.6 -5.06414 | TTGTTGTAATAAAAA TAAA TCG TTTA ACTTATGTACTTTTG glpP 1593762 - 1593196 - | Glycerol-3-phosphate responsive antiterminator (mRNA-binding) TERM 2493 1593971 - 1593949 - R 75 -5.5 -4.66987 | TATATGTTAAGAAAA TCGACCCCC AAACG GGAAGCCGA TTAGTCATGAAAGTT Aflv_1596 1595687 - 1593972 - | Sulfite reductase, beta subunit (hemoprotein) Aflv_1597 1597477 - 1595699 - | Sulfite reductase, alpha subunit (flavoprotein) TERM 2494 1596123 - 1596139 + g 70 -9.5 -2.89935 | ACTCCCGTACCTGGT CCAATCA TAA TGATTGG TGTATGGGCATCTTT TERM 2495 1596254 - 1596288 + g 91 -12.8 -2.64973 | opp_overlap 1596277 AACGCCTTTTCGCAA CCGTCCGTGCGCTTCG TAA CGAACCGCACCAACGG TAATATGCACTTCAT TERM 2496 1597751 - 1597734 - g 70 -2.7 -4.98758 | opp_overlap 1597734 1597736, overlap 1597736 AAAAATTTAGAAAAA GAGTTTC AGAC GAAACTG TTTATTCGTTCGCCA Aflv_1598 1597611 - 1598495 + | Transcriptional regulator (LysR family) TERM 2497 1598524 - 1598489 - T 100 -6.3 -5.80364 | gap 1, opp_overlap 1598489 ACTTCAACAAAAAAA GATGTAACA-CGCAGG TTCAT CCTACTCTGTTACATC TTTTTTTGCTTAATG TERM 2498 1598489 - 1598524 + T 85 -4.1 -5.65513 | gap 1, opp_overlap 1598489 ACTTCAACAAAAAAA GATGTAACA-CGCAGG TTCAT CCTACTCTGTTACATC TTTTTTTGCTTAATG sspH 1598791 - 1598534 - | Small acid-soluble spore protein TERM 2499 1598793 - 1598776 - G 100 -9.1 -5.19916 | opp_overlap 1598776 AAAATATGCAAAAAA GAGCGCC AAAA GGCACTC TTATAACAGTTCAAG Aflv_1600 1599504 - 1598794 - | hypothetical protein Aflv_1601 1599710 - 1600408 + | NAD-dependent protein deacetylase, SIR2 family TERM 2500 1600397 - 1600454 + T 77 -6.5 -4.64861 | gap 1, opp_overlap 1600400 1600401, overlap 1600401 1600406 CTGCAGGAAATTGAC GAAT-TCCTTTGATTGTGTCCCAAAATA TGT TCTTTTGGGACACAATCATTGCCTATTC TTTATTTTCCAAAAA TERM 2501 1600401 - 1600449 + T 71 -7.5 -3.80831 | opp_overlap 1600401 1600400, overlap 1600397 1600406 AGGAAATTGACGAAT TCCTTTGATTGTGTCCCAAAATA TGT TCTTTTGGGACACAATCATTGCC TATTCTTTATTTTCC TERM 2502 1600406 - 1600444 + T 100 -19.2 -3.27213 | opp_overlap 1600401 1600400, overlap 1600401 1600397 ATTGACGAATTCCTT TGATTGTGTCCCAAAATA TGT TCTTTTGGGACACAATCA TTGCCTATTCTTTAT Aflv_1602 1601849 - 1600449 - | Predicted membrane protein Aflv_1603 1602297 - 1601833 - | hypothetical protein dhaS 1602622 - 1604148 + | NAD-dependent aldehyde dehydrogenase TERM 2503 1604156 - 1604178 + F 93 -9.9 -5.0133 | gap 1 TCTTTTAACCATTCA GGCAGCGTCT CGAA AG-CGCTGCC TTTTTTGAAAGGATG Aflv_1605 1604191 - 1604532 + | hypothetical protein TERM 2504 1604532 - 1604552 + F 90 -4 -5.93252 | gap 1, opp_overlap 1604534, overlap 1604534 ACTGTTTGATTCATA G-AGCTGCT TTAA GGCAGCTTC TTTTTTATTTTTACG TERM 2505 1604534 - 1604549 + F 84 -6.8 -4.97159 | opp_overlap 1604534, overlap 1604532 TGTTTGATTCATAGA GCTGCT TTAA GGCAGC TTCTTTTTTATTTTT TERM 2506 1604594 - 1604581 - f 71 -3.9 -4.84363 | opp_overlap 1604581 1604582, overlap 1604574 1604571 1604582 CGAAATCACCAAAAA TGAAT GAAT ATTCA TTCTTTTTTGATATA TERM 2507 1604582 - 1604597 + F 87 -6.2 -5.23316 | opp_overlap 1604581 1604582 1604574 1604571, overlap 1604581 GAAATCACCAAAAAT GAATGA ATAT TCATTC TTTTTTGATATAATG TERM 2508 1605148 - 1605135 - g 73 -3.9 -5.00884 | ACTGTCTGGAAAAAA CAAAA GTGA TTTTG CGTGAAGAAAGCATT Aflv_1606 1604633 - 1605463 + | Zn-dependent hydrolase Aflv_1607 1606276 - 1605467 - | Uncharacterized integral membrane protein Aflv_1608 1606516 - 1606292 - | Predicted transcriptional regulator Aflv_1609 1607006 - 1606518 - | hypothetical protein TERM 2509 1606555 - 1606569 + gH 73 -7.2 -4.13767 | GTTTTGATTTCAATC GCTTTT TGT AAAAGC TTTTGCAGTACCGCG TERM 2510 1607056 - 1607071 + Gr 71 -4.8 -4.58242 | opp_overlap 1607044 1607041, overlap 1607044 TTATTTATCGTTTTA CAATAA ATTA TTATTG TTTTATACGTTTTTT TERM 2511 1607142 - 1607106 - gR 100 -10.2 -6.09196 | gap 1, opp_overlap 1607106 TCCAAAACAAAAAAA GGCTA-GCCCGAAACGC GAAT GCGTTTTGGGATTAGCC TTTTTTTTACACCAG TERM 2512 1607106 - 1607142 + Gr 100 -14.6 -5.75342 | gap 1, opp_overlap 1607106 TCCAAAACAAAAAAA GGCTAG-CCCGAAACGC GAAT GCGTTTTGGGATTAGCC TTTTTTTTACACCAG Aflv_1610 1606982 - 1607140 + | hypothetical protein Aflv_1611 1607852 - 1607337 - | hypothetical protein TERM 2513 1607727 - 1607704 - G 86 -8.8 -4.30995 | overlap 1607701 TTGTTCATAAAATAA CGGGCTTCGT TCGC ACGCAACCCG GCAAGAGCATCTGCT Aflv_1612 1608235 - 1607846 - | Prophage maintenance system killer protein Aflv_1613 1608492 - 1608232 - | SpoVT/AbrB-like cell growth regulatory protein Aflv_1614 1609066 - 1608695 - | hypothetical protein TERM 2514 1609735 - 1609705 - g 86 -10.6 -3.74347 | TTTATAAATTTCAAA TGCTTCACCGTATT TTA AACACAGTGAAACA TGAGTATGACTTCAT Aflv_1615 1609206 - 1610201 + | Transcriptional regulator of ParA family, inhibits the initiation of sporulation Aflv_1616 1610198 - 1610584 + | hypothetical protein TERM 2515 1610603 - 1610564 - T 84 -2.2 -5.79588 | gap 1, overlap 1610568 CGAAAATCAAAAAAA CAAAT-GAGCGAACAGATA TAA CAGCTGTTCGCTCAACATA CGACCTCATTCGGAC TERM 2516 1610598 - 1610568 - T 100 -13.4 -5.25976 | overlap 1610564 AATCAAAAAAACAAA TGAGCGAACAGATA TAA CAGCTGTTCGCTCA ACATACGACCTCATT Aflv_1617 1611610 - 1610609 - | Membrane-associated thiol-disulfide oxidoreductase Aflv_1618 1612132 - 1611740 - | hypothetical protein Aflv_1619 1612635 - 1612162 - | Uncharacterized conserved domain protein TERM 2517 1612279 - 1612295 + g 82 -2.1 -5.60993 | opp_overlap 1612279 CGCATATTCACGAGA CGGCGGA ATT TCAGGCG TTTTTTTGTGAACAA Aflv_1620 1613573 - 1612695 - | Predicted acetyltransferase TERM 2518 1614130 - 1614143 + G 79 -3.1 -5.36441 | GTATTCGGCCCGAAA GATGT ATTA ACGTC TTTTTTGTATCCAGA Aflv_1621 1613581 - 1614204 + | Endonuclease, Uma2 family (restriction endonuclease fold) TERM 2519 1614211 - 1614234 + T 73 -5.9 -4.62054 | opp_overlap 1614211 1614205 GTGGAATAACATAAA GCCGGTCAG CATTCC CTAGCCGGC TTTTCGTTTGCTTAA TERM 2520 1614234 - 1614211 - T 70 -5.9 -4.34263 | opp_overlap 1614211, overlap 1614205 GTGGAATAACATAAA GCCGGTCAG CATTCC CTAGCCGGC TTTTCGTTTGCTTAA Aflv_1622 1614959 - 1614252 - | Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis TERM 2521 1614726 - 1614743 + g 71 -9.9 -2.57489 | overlap 1614722 CGCTGCGGCTTGCTT GCCAATG TCGG CATTGGC TCGCTTCGCTTCGTC TERM 2522 1614976 - 1614996 + r 70 -3.2 -4.84262 | overlap 1614978 1614989 GTTACACCTCGGTTT TGTCCTCC AAAGC GGAGGGAA TTTTCTTCCTTATTG TERM 2523 1615183 - 1615159 - R 100 -5.8 -6.14618 | TACAAAACAAAAAAA GACAGAAG TTTTTTCCG CTTCTGTC TCAACTTATCGGCAA Aflv_1623 1615589 - 1615212 - | Glyoxalase, Dioxygenase superfamily Aflv_1624 1616827 - 1615688 - | HEAT repeats containing protein TERM 2524 1616208 - 1616221 + g 71 -3.1 -4.92239 | overlap 1616209 ATTTTTTCAGTCACT TGAAC ACTT GTTCG TTTTTGCGTTTTTGC TERM 2525 1616907 - 1616895 - R 78 -4.1 -5.24515 | AAGAAACAAAGAAAA GCAAA AGT TTCGC TCAATAAAAAAATAC TERM 2526 1616956 - 1616920 - R 95 -4.5 -5.7946 | CGCTCAATAAAAAAA TACAGCCACCTCT ACACTTATCAA AGAGGCGACCGTA TTTAGTCTTACGTAA Aflv_1625 1617455 - 1616964 - | NUDIX family hydrolase Aflv_1626 1618059 - 1617445 - | NUDIX family hydrolase Aflv_1627 1620192 - 1618069 - | Argonaute, predicted to be implicated in RNA metabolism TERM 2527 1618241 - 1618255 + g 73 -7.2 -4.11371 | opp_overlap 1618241 1618243 ACAATATCGCGAATA GACAAA CAG TTTGTC TTTTGAACAATCTTC Aflv_1628 1620951 - 1620256 - | hypothetical protein TERM 2528 1620912 - 1620895 - G 82 -4.8 -5.37593 | CGCCAAATTAAAAAA GGAGCC AAATAG AGCTCC CTTAAGGGTTGTAAA Aflv_1629 1621796 - 1620975 - | Transposase TERM 2529 1621849 - 1621879 + r 79 -3.3 -5.40072 | opp_overlap 1621849, overlap 1621850 TGTTGATATATCAAG GTTTCTTGGCATC ATAGG GGTGCCAAAAAAA TTTTTTTCGACAAAA Aflv_1630 1623525 - 1622209 - | Transposase Aflv_1631 1623601 - 1623813 + | hypothetical protein Aflv_1632 1624159 - 1624653 + | Predicted nucleic acid-binding protein, contains PIN domain Aflv_1633 1625021 - 1625335 + | Transposase Aflv_1634 1625416 - 1626192 + | Transposase TERM 2530 1626251 - 1626293 + T 72 -9.2 -3.29511 | opp_overlap 1626251, overlap 1626261 GACCTCTCCTCAGAA CTCCGTGGGGCTGTCAAG TGCTCTC CTTGACAGTTTCACAGGG TTCTGAGACACTAGG TERM 2531 1626360 - 1626324 - T 81 -7.4 -4.62069 | gap 1, opp_overlap 1626329, overlap 1626329 AAAAAGACGAGAAAA GGAAAGGAACCAGAGCT GTTT AGCCCTGATTCC-TTCT GGTTAACCGATTTTA TERM 2532 1626329 - 1626356 + T 72 -8.4 -3.51032 | opp_overlap 1626329 1626324 GACGAGAAAAGGAAA GGAACCAGAGCT GTTT AGCCCTGATTCC TTCTGGTTAACCGAT TERM 2533 1626356 - 1626329 - T 100 -12.8 -4.28487 | opp_overlap 1626329, overlap 1626324 GACGAGAAAAGGAAA GGAACCAGAGCT GTTT AGCCCTGATTCC TTCTGGTTAACCGAT Aflv_1635 1628415 - 1626448 - | hypothetical protein TERM 2534 1627358 - 1627308 - G 78 -5.6 -4.75404 | opp_overlap 1627302 1627320 AAAGGCTATTAAAAA TTTTATTGAGTTGATTTGTAGGGA CAT TACATACAAATCTTCTCACTAAAA AGTTTTCAATGATTG Aflv_1636 1628727 - 1628644 - | hypothetical protein Aflv_1637 1630120 - 1628810 - | Competence protein CoiA-like family TERM 2535 1629649 - 1629661 + g 71 -3.4 -4.97461 | GATTACGTTCTCGAA CTTG CTTGA CAAG TTTTTCATCTTTATT Aflv_1638 1632017 - 1630308 - | Predicted ATP-dependent endonuclease of the OLD family TERM 2536 1632163 - 1632139 - R 100 -7.2 -5.82388 | opp_overlap 1632139 AAAGTTTAAAAAAAA GACAGAAGTT TTATC AACCTCTGCC TTTTGCCTGTTCTGT Aflv_1639 1634617 - 1632668 - | DEAD-like helicase domain fused to uncharacterized conserved domain Aflv_1640 1635012 - 1634653 - | Predicted pyrophosphatase Aflv_1641 1635163 - 1634999 - | hypothetical protein TERM 2537 1635343 - 1635317 - R 75 -3 -5.26918 | opp_overlap 1635319, overlap 1635319 ACATGTCATAAAAAA GAGCCATAGC TAAATGC GCTATGACTT CATTTCCACCACTTT Aflv_1642 1636195 - 1635335 - | Transposase TERM 2538 1636290 - 1636269 - R 93 -7.3 -5.46129 | opp_overlap 1636283 1636284, overlap 1636271 GAACAAACGAAAAAA CAGAGAGTC GCTT GACTCCCTA AGGAGATTGTTTCTA TERM 2539 1636288 - 1636271 - R 80 -7.7 -4.33053 | opp_overlap 1636283 1636284, overlap 1636269 ACAAACGAAAAAACA GAGAGTC GCTT GACTCCC TAAGGAGATTGTTTC TERM 2540 1636356 - 1636336 - R 100 -13.3 -5.00196 | opp_overlap 1636335 1636334 TTGCAAATAACAAAA GGAGCGACA CAA TGCCGCTCC CCTTCTTGACCTGTC Aflv_1643 1636611 - 1636504 - | hypothetical protein Aflv_1644 1637530 - 1637018 - | Transposase TERM 2541 1637249 - 1637217 - G 75 -5.6 -4.61284 | gap 1, overlap 1637212 1637221 AAGATGAAATGAAAA GCATCGCCTTCCTCG CCAT CAAGAAAGGCT-TGC ACCATCTTGGCATGA Aflv_1645 1638078 - 1637548 - | Transposase TERM 2542 1638933 - 1638974 + r 85 -3 -5.78622 | gap 1 ACAAAAGTTCGGCAA GATAGCTTTTCCCCGC-TA CCGTT TAGGCAGGGCTGAGCTATC TTTTTTTTCACCTAA TERM 2543 1639297 - 1639283 - R 70 -2.8 -5.03145 | GAATCTTTTAAAAAA GACAGA GGT TTTGTC AACTCTTGTCTGCTT TERM 2544 1639529 - 1639512 - R 100 -11.3 -5.7946 | opp_overlap 1639511 TTTCCAAGAAAAAAA CACCAGG TTTC CCTGGTG CTCCGTTGCTAGCAA Aflv_1648 1640587 - 1640486 - | hypothetical protein TERM 2545 1640579 - 1640597 + g 71 -6.8 -4.1552 | TAAGCTCTCTCCTTT TATTTGCA ATT TGCAAGTA TTTGTTCAAGCAATA TERM 2546 1640630 - 1640613 - R 73 -9.9 -3.23853 | overlap 1640611 TTTGTTCAAGCAATA GGCAAGA TCCC TCTTGCC TTAAAACAACGGTTT Aflv_1649 1641077 - 1640631 - | Transcriptional regulator, MarR family TERM 2547 1641147 - 1641132 - H 83 -4.8 -5.27335 | TTTTGCAAATAAAAA TTTTCT CATG AGAAAA CGATCGATTGTTTTG TERM 2548 1641423 - 1641400 - H 76 -6.8 -4.3739 | gap 1, opp_overlap 1641400 TATTTGCGGACAAAA TCAGGTTCTCA TTA CG-GAACCTGA TTTTTTTACGTGTTG TERM 2549 1641400 - 1641423 + H 93 -7.5 -5.52909 | opp_overlap 1641400 TATTTGCGGACAAAA TCAGGTTCT CATTAC GGAACCTGA TTTTTTTACGTGTTG TERM 2550 1641639 - 1641659 + G 76 -6.9 -4.56597 | opp_overlap 1641639 GAGTATATGACACAA GTGGATC GTATACA GATCCAC TTTTTCAACCGAACA TERM 2551 1642161 - 1642175 + G 70 -7.2 -3.86346 | ACTCCCCTGTTCCCG TAGGTA CTG TACCTA TTTATCAAGCACTAG TERM 2552 1642863 - 1642845 - g 74 -6.7 -4.37886 | gap 1, opp_overlap 1642845 1642847, overlap 1642847 TCATTGCCTATAAAA TC-GCCGC CCAT GCGGCTGA TTTAGCAAAAGGGCA TERM 2553 1642847 - 1642860 + G 71 -9.5 -2.90496 | opp_overlap 1642845 1642847, overlap 1642845 ATTGCCTATAAAATC GCCGC CCAT GCGGC TGATTTAGCAAAAGG thiC 1641470 - 1643179 + | Thiamine biosynthesis protein ThiC TERM 2554 1643197 - 1643158 - T 90 -10.8 -4.15632 | opp_overlap 1643157 1643158 1643168, overlap 1643159 ATCATTATATACAAA TGCTGTACAAGTTGAGCA CTAG CGCTCAACTTGTACTACG ATTATTAAAAATAAA TERM 2555 1643158 - 1643197 + T 73 -10.1 -2.77895 | opp_overlap 1643158 1643159, overlap 1643157 1643168 ATCATTATATACAAA TGCTGTACAAGTTGAGC ACTAGC GCTCAACTTGTACTACG ATTATTAAAAATAAA TERM 2556 1643196 - 1643159 - T 95 -14.3 -3.08656 | opp_overlap 1643158 1643157 1643168, overlap 1643158 TCATTATATACAAAT GCTGTACAAGTTGAGCA CTAG CGCTCAACTTGTACTAC GATTATTAAAAATAA TERM 2557 1643501 - 1643524 + T 100 -9.6 -5.24799 | opp_overlap 1643501 ATCGCTACAAAAAAA GACAGAAGCC CACC GACTTCTGTC TTTTTATGTTTATGC TERM 2558 1643524 - 1643501 - T 100 -11.8 -5.61596 | opp_overlap 1643501 ATCGCTACAAAAAAA GACAGAAGCC CACC GACTTCTGTC TTTTTATGTTTATGC Aflv_1651 1645090 - 1643534 - | Malate/quinone oxidoreductase TERM 2559 1645211 - 1645241 + H 100 -6.3 -6.01187 | gap 1, opp_overlap 1645210 1645211 1645213 TATCAGTCCAGTAAC TATTCAGC-CACAT CATA AAGTGAGCTGAATA TTTTTTTCTTTCCTT TERM 2560 1646159 - 1646147 - g 72 -7.7 -3.75884 | opp_overlap 1646146 GTGGAAAGAAAGCAA CCGAT GAA ATCGG GATTCTTCCACAATA TERM 2561 1646691 - 1646679 - g 82 -3.3 -5.58074 | opp_overlap 1646679 1646686, overlap 1646668 CAAGCACGAAAAAAA CGTGT GGG ACTCG TTGTGTCTTCTGTTG Aflv_1652 1645288 - 1646745 + | Transposase TERM 2562 1646743 - 1646772 + F 79 -8.8 -3.98236 | gap 1 GTTCTTTCCGCTACG TAGGGCATTTTCT ATGAC AGA-AATGCCCTA TTTGTGCTGGGCTTT Aflv_1653 1647242 - 1648357 + | Signal transduction diguanylate cyclase TERM 2563 1648390 - 1648359 - T 100 -17.6 -4.04206 | opp_overlap 1648364, overlap 1648364 TCATCTCGACATAAA TAAAACGAACAAGG TTGC CCTTGTTCGTTTTA TTCAACCGGTGCTTC TERM 2564 1648385 - 1648364 - T 100 -13.1 -5.05113 | opp_overlap 1648364, overlap 1648359 TCGACATAAATAAAA CGAACAAGG TTGC CCTTGTTCG TTTTATTCAACCGGT TERM 2565 1648364 - 1648385 + T 100 -13.1 -4.63486 | opp_overlap 1648359 1648364 TCGACATAAATAAAA CGAACAAGG TTGC CCTTGTTCG TTTTATTCAACCGGT Aflv_1654 1649080 - 1648388 - | Predicted integral membrane protein Aflv_1655 1650564 - 1649335 - | Transposase Aflv_1656 1650666 - 1651361 + | Uncharacterized membrane protein with two C-terminal CXXC motifs TERM 2566 1651388 - 1651353 - T 100 -17.2 -4.08216 | gap 1, opp_overlap 1651330 1651363 CCATCTTGCGGAAAA GCATTATAAACCGAGCA ATA TGCTCGGTTT-TAATGC CCGATTGTCTGTTGA TERM 2567 1651363 - 1651379 + T 100 -12.3 -4.25848 | opp_overlap 1651353 GAAAAGCATTATAAA CCGAGCA ATA TGCTCGG TTTTAATGCCCGATT Aflv_1657 1652851 - 1651382 - | Sulfate permease TERM 2568 1652335 - 1652310 - G 78 -9.1 -3.76968 | overlap 1652333 AATTTAGCCACGAAA GCAATCGTTGT AATG ACAACAATCGC CACAAGCGGAGATGG TERM 2569 1653025 - 1653013 - H 76 -3.5 -5.22312 | overlap 1652995 AGCGATACCAAAAAA TTTTT TTG AAAAA GCTTTCATTAGACGA uspA 1653076 - 1653492 + | Universal stress protein TERM 2570 1653487 - 1653526 + T 77 -5 -4.84529 | opp_overlap 1653498, overlap 1653498 CCCGTATTAATTGTA AAGTAAAAAAAGTTCGGC GCCT GCCGAACTTTTTACCCTC TTTTTCCCTTTATAG TERM 2571 1653515 - 1653498 - T 100 -11.3 -5.72207 | opp_overlap 1653498 1653487 TGTAAAGTAAAAAAA GTTCGGC GCCT GCCGAAC TTTTTACCCTCTTTT TERM 2572 1653498 - 1653515 + T 95 -11.3 -4.69464 | opp_overlap 1653498, overlap 1653487 TGTAAAGTAAAAAAA GTTCGGC GCCT GCCGAAC TTTTTACCCTCTTTT Aflv_1659 1653662 - 1653519 - | hypothetical protein Aflv_1660 1654678 - 1653674 - | Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Aflv_1661 1656012 - 1654768 - | GntP family permease TERM 2573 1654911 - 1654898 - G 87 -4.5 -5.55664 | overlap 1654899 GTAGCATGAAAAAAA CTGCC GTGT GGCAA ATGATCAAGCACCGT TERM 2574 1655347 - 1655359 + g 76 -7.7 -4.13945 | opp_overlap 1655346 AATGGCAACAAGAGG GGCAA CGA TTGCC TTTTGCCATGAAAGT TERM 2575 1655369 - 1655379 + g 78 -4 -5.18561 | ATTGCCTTTTGCCAT GAAA GTG TTTC TTTTTTCACTGTTTC TERM 2576 1656115 - 1656097 - R 93 -8.1 -5.37345 | opp_overlap 1656091 1656097 TGCAAGCACAAAAAA GGTGCCC TGTTC GGACACC TTTTTCTTATGATGA TERM 2577 1656097 - 1656115 + r 85 -5.9 -5.22006 | opp_overlap 1656097, overlap 1656091 TGCAAGCACAAAAAA GGTGCCC TGTTC GGACACC TTTTTCTTATGATGA Aflv_1662 1657696 - 1656554 - | Transposase of IS5377-like element TERM 2578 1657022 - 1657041 + g 91 -5 -5.67063 | AACCGATGAGGATGT GCTGGAAA GGCG TTTCAAGC TTTTTTTCTGATGAA Aflv_1663 1658648 - 1657779 - | Transposase (ISL3 family) TERM 2579 1659037 - 1658999 - H 82 -8.6 -4.17958 | opp_overlap 1658994 1658999 1658995, overlap 1659005 1659009 1659015 AACATGTTCAATAAA TTAAAATAAATTAAAATA AAT TATTTTAACTTAATTTAA TATATTTACTGAGGA TERM 2580 1659031 - 1659005 - H 83 -7.6 -4.67942 | opp_overlap 1658994 1658999 1658995, overlap 1658999 1659009 1659015 TTCAATAAATTAAAA TAAATTAAAATA AAT TATTTTAACTTA ATTTAATATATTTAC TERM 2581 1659027 - 1659009 - H 82 -6.2 -4.84353 | opp_overlap 1658994 1658999 1658995, overlap 1659005 1658999 1659015 ATAAATTAAAATAAA TTAAAATA AAT TATTTTAA CTTAATTTAATATAT Aflv_1664 1659062 - 1659433 + | Lactoylglutathione lyase-like lyase TERM 2582 1659601 - 1659575 - T 93 -8.8 -5.22006 | opp_overlap 1659575 1659595 TTATTACAATAAAAA GCTCCTAAGC ATATAGA ACTTAGGAGC TTCCTGCATTTTTAT Aflv_1665 1660161 - 1659775 - | Transposase, truncated TERM 2583 1660031 - 1660051 + g 72 -6.1 -4.2535 | overlap 1660026 1660032 AATAAGATTCCTGCT TGTTCGGCA GTT TGTCGAACC TTTTCACTGTCGTAT TERM 2584 1660032 - 1660050 + g 72 -9.6 -3.14487 | overlap 1660026 1660031 ATAAGATTCCTGCTT GTTCGGCA GTT TGTCGAAC CTTTTCACTGTCGTA Aflv_1666 1660282 - 1660205 - | hypothetical protein TERM 2585 1660369 - 1660337 - R 100 -20.7 -4.46775 | opp_overlap 1660345, overlap 1660345 TATGGAAAAGAGAAA GCACAAAAGAGGCCG ATT CGGCCCCTTTCGTGC TAATACCCCATTTCC TERM 2586 1660361 - 1660345 - R 93 -11.5 -4.6575 | opp_overlap 1660345, overlap 1660337 AGAGAAAGCACAAAA GAGGCCG ATT CGGCCCC TTTCGTGCTAATACC TERM 2587 1660345 - 1660361 + r 79 -9.3 -3.80573 | opp_overlap 1660345 1660337 AGAGAAAGCACAAAA GAGGCCG ATT CGGCCCC TTTCGTGCTAATACC Aflv_1669 1662415 - 1661162 - | Transposase TERM 2588 1661198 - 1661218 + g 71 -6.7 -4.18762 | CTTCGCCGGAATCGC CGCAAACGG GGA CCGATGGCG TTTTACATAGGCGTT TERM 2589 1662461 - 1662447 - R 79 -11.4 -2.72344 | opp_overlap 1662440 1662451 TCTCACTTGGAATCA GGACCG TTC CGGTCC GTCTGCCCTTATCGT Aflv_1670 1663113 - 1662556 - | Transposon related protein, Zn-finger domain TERM 2590 1662658 - 1662670 + g 82 -3.4 -5.42198 | overlap 1662656 CGTTCGGATCCACCA GGAA GCCCG TTCC TTTTCTTTTTTCACG TERM 2591 1663226 - 1663173 - R 93 -9.2 -5.3236 | overlap 1663177 ATAATTCACAAAAAA TTTAGCACATTCTTTCAGAAAA GGGGAGAGGG CTTTCTGAAGGAATGTGCAAAA AAATGGCTCTTTTGT TERM 2592 1663222 - 1663177 - R 75 -10 -2.96157 | overlap 1663173 TTCACAAAAAATTTA GCACATTCTTTCAGAAAA GGGGAGAGGG CTTTCTGAAGGAATGTGC AAAAAAATGGCTCTT Aflv_1671 1664332 - 1663400 - | Proline dehydrogenase TERM 2593 1664214 - 1664239 + g 78 -5.4 -5.03145 | gap 1, opp_overlap 1664212 1664213 1664228 TCACCTGCAACAACT TGGGAAGCTCC AAAGC GGAGCC-CCCA TTTTTTCGCAGCTTG TERM 2594 1664828 - 1664849 + r 100 -14.5 -4.28254 | opp_overlap 1664828 AAAGCGTGAAAAAAA GACTTCGGG CTGT CCCGAAGTC TTTTCCCTATTAACG TERM 2595 1664849 - 1664828 - R 100 -14.5 -5.4477 | opp_overlap 1664828 AAAGCGTGAAAAAAA GACTTCGGG CTGT CCCGAAGTC TTTTCCCTATTAACG Aflv_1672 1665812 - 1664859 - | Uncharacterized ABC-type transport system, permease component TERM 2596 1665059 - 1665044 - G 71 -4.6 -4.6971 | CAAATCCGAAGAAAA GCGCTG CTCC CATCGC ACCAAGTGGATGCCA Aflv_1673 1666859 - 1665813 - | ABC-type uncharacterized transport system, permease component TERM 2597 1666040 - 1666071 + g 73 -7.3 -4.11751 | opp_overlap 1666039 CAATTCCATCAAATC CGACTCCGGTAAA TCCAGC TTTAACGGAGACG TTTTCAAAAGTTCCT Aflv_1674 1668385 - 1666856 - | ABC-type uncharacterized transport system, ATPase component TERM 2598 1667625 - 1667641 + g 77 -6.5 -4.69512 | overlap 1667626 1667627 ATTTCAAGGACAGGT TTGCCGA CTT TCGGCGG TTGTTTTTCTGTTTT TERM 2599 1667822 - 1667833 + g 70 -7.2 -3.89412 | GATCGATTTTCCTTC GCGC ACAA GCGC TTTCATAATTTGGAT TERM 2600 1668420 - 1668465 + r 100 -18.7 -3.28712 | opp_overlap 1668423 1668428 1668434, overlap 1668421 1668428 1668434 1668460 TGAGCATGGTTTACA TCACTAAATGAAAAGCTGCAA CATG TTGCAACTTTTCATTTAGTGG TTCTCCGAAGAAACG TERM 2601 1668421 - 1668464 + r 100 -20 -2.57132 | opp_overlap 1668423 1668428 1668434, overlap 1668420 1668428 1668434 1668460 GAGCATGGTTTACAT CACTAAATGAAAAGCTGCAA CATG TTGCAACTTTTCATTTAGTG GTTCTCCGAAGAAAC TERM 2602 1668462 - 1668423 - R 100 -19 -2.62616 | opp_overlap 1668421 1668420 1668428 1668434 1668460, overlap 1668428 1668434 GCATGGTTTACATCA CTAAATGAAAAGCTGCAA CATG TTGCAACTTTTCATTTAG TGGTTCTCCGAAGAA TERM 2603 1668457 - 1668428 - R 100 -13.1 -3.81951 | opp_overlap 1668428 1668421 1668420 1668434, overlap 1668423 1668434 GTTTACATCACTAAA TGAAAAGCTGCAA CATG TTGCAACTTTTCA TTTAGTGGTTCTCCG TERM 2604 1668428 - 1668457 + r 86 -10.9 -3.86944 | opp_overlap 1668423 1668428 1668434, overlap 1668421 1668420 1668434 GTTTACATCACTAAA TGAAAAGCTGCAA CATG TTGCAACTTTTCA TTTAGTGGTTCTCCG TERM 2605 1668451 - 1668434 - R 77 -6.3 -4.59376 | opp_overlap 1668434 1668428 1668421 1668420, overlap 1668428 1668423 ATCACTAAATGAAAA GCTGCAA CATG TTGCAAC TTTTCATTTAGTGGT TERM 2606 1668460 - 1668500 + r 90 -11.3 -4.07618 | opp_overlap 1668423 1668480 1668495, overlap 1668421 1668420 TTGCAACTTTTCATT TAGTGGTTCTCCGAAGA AACGTAC TCTTCGGAGAACAACCA TTTGGTTATTGCAAC Aflv_1675 1669579 - 1668506 - | ABC-type uncharacterized transport system, periplasmic component/surface lipoprotein Aflv_1676 1670413 - 1669688 - | Transcriptional regulator, GntR family TERM 2607 1670613 - 1670594 - R 87 -5 -5.38047 | opp_overlap 1670594 CATTTATACAAAAAA GAGGCT TGTTTTTT AGCCTC TTTTATGACGTTTTT spoIIIE 1672943 - 1670616 - | DNA segregation ATPase FtsK/SpoIIIE TERM 2608 1671567 - 1671595 + gr 71 -3 -4.99947 | ACTTTTCCCACTTCC TGTCGCCCCTGC AACGA GTAAGTGCGGCA TTTTATTTAGTTCCG TERM 2609 1671953 - 1671966 + gr 80 -3.9 -5.26119 | TTTCAAGCTTGCGGG CATTT TCAT AAATG TTTTCTTTTTCCCGC TERM 2610 1672905 - 1672881 - GR 74 -4.3 -4.9181 | gap 1, opp_overlap 1672881 1672875, overlap 1672875 1672867 ATATAAGATGAAAAA GCAGCCAACA GAGAAG CGT-GGCTGC TTGTTCTTATTATAC Aflv_1678 1673139 - 1672915 - | hypothetical protein tepA 1673849 - 1673136 - | Protease subunit of ATP-dependent Clp protease TERM 2611 1673911 - 1673939 + r 100 -14.7 -3.28001 | opp_overlap 1673916, overlap 1673916 CGACATGTTCATACA AAAAACACCTGCG CGT CGCAGGTGTTTTC TTGACTTTGAGCATG TERM 2612 1673916 - 1673934 + r 100 -14.6 -4.75309 | opp_overlap 1673916, overlap 1673911 TGTTCATACAAAAAA CACCTGCG CGT CGCAGGTG TTTTCTTGACTTTGA TERM 2613 1673934 - 1673916 - R 100 -14.6 -5.36441 | opp_overlap 1673916 1673911 TGTTCATACAAAAAA CACCTGCG CGT CGCAGGTG TTTTCTTGACTTTGA Aflv_1680 1675642 - 1673960 - | mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) TERM 2614 1675069 - 1675057 - G 73 -5.5 -4.73677 | opp_overlap 1675066, overlap 1675053 CTGATAATAAACAAA GCACA CCT TGCGC CCCAATTTGCGCCAT TERM 2615 1675701 - 1675721 + r 89 -9.8 -4.21936 | opp_overlap 1675701, overlap 1675705 TTCAACAATAAAAAA GAAAGGGA TGAAT TCCCTTTC TTTTAACCTTGTAAC TERM 2616 1675721 - 1675701 - R 100 -9.8 -5.64873 | opp_overlap 1675701 1675705 TTCAACAATAAAAAA GAAAGGGA TGAAT TCCCTTTC TTTTAACCTTGTAAC TERM 2617 1675705 - 1675717 + r 74 -4.8 -4.68655 | opp_overlap 1675701, overlap 1675701 ACAATAAAAAAGAAA GGGA TGAAT TCCC TTTCTTTTAACCTTG dapA 1676593 - 1675724 - | Dihydrodipicolinate synthase dapG 1677844 - 1676606 - | Aspartokinase I (alpha and beta subunits) asd 1678970 - 1677858 - | Aspartate-semialdehyde dehydrogenase spoVFB 1679606 - 1679013 - | Dipicolinate synthase subunit B spoVFA 1680529 - 1679603 - | Dipicolinate synthase subunit A TERM 2618 1680620 - 1680603 - R 93 -7.7 -5.46698 | opp_overlap 1680605 CGGAAAATGAAAAAA GACACCC CTTG AGGTGTC TAGTCATCGACATCG Aflv_1686 1680856 - 1680620 - | Protein implicated in RNA metabolism, contains PRC-barrel domain TERM 2619 1680929 - 1680904 - R 89 -4.7 -5.63504 | opp_overlap 1680905, overlap 1680892 1680905 AAGGGCATAAAAAAA TGCCTGCAA GTTTATTG TTGCAGGCT TTTTGGCAATGTTCC TERM 2620 1680905 - 1680928 + r 82 -8.2 -4.62302 | opp_overlap 1680892 1680904 1680905 AGGGCATAAAAAAAT GCCTGCAA GTTTATTG TTGCAGGC TTTTTGGCAATGTTC TERM 2621 1680928 - 1680905 - R 75 -8.2 -3.96475 | opp_overlap 1680905, overlap 1680892 1680904 AGGGCATAAAAAAAT GCCTGCAA GTTTATTG TTGCAGGC TTTTTGGCAATGTTC mlpA 1682156 - 1680915 - | Zn-dependent peptidase TERM 2622 1681972 - 1681984 + g 100 -10.5 -4.5287 | GATTCCGCGATATCG CGCGC TGT GCGCG TTTTCGTTCCTTTAA Aflv_1688 1683228 - 1682149 - | Predicted xylanase/chitin deacetylase pnpA 1685339 - 1683231 - | Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) TERM 2623 1684382 - 1684397 + g 82 -6.8 -4.85129 | overlap 1684379 TTTCATCGACTTTTC GTCCGT CCGG GCGGAC TTTTTCCTCTGTAAT TERM 2624 1685419 - 1685448 + r 87 -12.3 -3.31792 | opp_overlap 1685420 1685426, overlap 1685420 1685426 TCGGCGCAAATACTA ATAAAAAGCGGGA ATGC TCCCGCTTTTTAC TTATCGGCGTAATCC TERM 2625 1685447 - 1685420 - R 100 -15.8 -3.45571 | opp_overlap 1685420 1685419 1685426, overlap 1685426 CGGCGCAAATACTAA TAAAAAGCGGGA ATGC TCCCGCTTTTTA CTTATCGGCGTAATC TERM 2626 1685420 - 1685447 + r 100 -15.8 -2.58861 | opp_overlap 1685420 1685426, overlap 1685419 1685426 CGGCGCAAATACTAA TAAAAAGCGGGA ATGC TCCCGCTTTTTA CTTATCGGCGTAATC TERM 2627 1685426 - 1685441 + r 93 -10.4 -4.93365 | opp_overlap 1685420 1685426, overlap 1685420 1685419 AAATACTAATAAAAA GCGGGA ATGC TCCCGC TTTTTACTTATCGGC TERM 2628 1685441 - 1685426 - R 100 -10.4 -5.20606 | opp_overlap 1685426 1685420 1685419, overlap 1685420 AAATACTAATAAAAA GCGGGA ATGC TCCCGC TTTTTACTTATCGGC rpsO 1685718 - 1685449 - | Ribosomal protein S15P ribC 1686781 - 1685801 - | FAD synthase TERM 2629 1686514 - 1686529 + g 86 -2.6 -5.77734 | ATAAATTATCTACCC CAAGTT TTGC AATTTG TTTTTCTTTTTCTTT truB 1687726 - 1686782 - | tRNA pseudouridine synthase TERM 2630 1687699 - 1687731 + g 88 -9.4 -4.28819 | gap 1, opp_overlap 1687704, overlap 1687697 1687701 1687704 CACCTCTAAAATAGC GGA-AATGGATAGAC GCAT GTCTATCCATTATTC TTCTTTATGTTCTTT TERM 2631 1687701 - 1687728 + g 88 -10 -4.21393 | opp_overlap 1687704, overlap 1687699 1687697 1687704 CCTCTAAAATAGCGG AAATGGATAGAC GCAT GTCTATCCATTA TTCTTCTTTATGTTC TERM 2632 1687725 - 1687704 - G 90 -11.7 -3.71687 | opp_overlap 1687704 1687701 1687699 1687697 CTAAAATAGCGGAAA TGGATAGAC GCAT GTCTATCCA TTATTCTTCTTTATG TERM 2633 1687704 - 1687725 + g 100 -11.7 -4.18443 | opp_overlap 1687704, overlap 1687701 1687699 1687697 CTAAAATAGCGGAAA TGGATAGAC GCAT GTCTATCCA TTATTCTTCTTTATG rbfA 1688109 - 1687726 - | Ribosome-binding factor A Aflv_1694 1688378 - 1688100 - | hypothetical protein TERM 2634 1688284 - 1688319 + g 88 -6.8 -5.14626 | opp_overlap 1688301, overlap 1688285 1688286 ATATTATATTTTTGT TTGAGCCGTGTGACAA TGCG TTGCAACACGGCTCGC TTTTCTTTTAATGAT TERM 2635 1688285 - 1688318 + g 82 -10.3 -3.67149 | opp_overlap 1688301, overlap 1688284 1688286 TATTATATTTTTGTT TGAGCCGTGTGACAA TGCG TTGCAACACGGCTCG CTTTTCTTTTAATGA TERM 2636 1688286 - 1688317 + g 81 -11.6 -2.79205 | opp_overlap 1688301, overlap 1688285 1688284 ATTATATTTTTGTTT GAGCCGTGTGACAA TGCG TTGCAACACGGCTC GCTTTTCTTTTAATG infB 1690546 - 1688375 - | Translation initiation factor 2 (IF-2; GTPase) TERM 2637 1688425 - 1688441 + g 74 -4.5 -4.78107 | CAATAACGTCGCCTT CTTTAAT ATC GTTAAAG TTTTTAATCGTGATC TERM 2638 1689047 - 1689057 + g 71 -4 -4.85782 | CGCTTTTACACTTCG TTGT TGA ACAA TTTGTTTTTGCGCAC TERM 2639 1689073 - 1689094 + g 86 -5.8 -5.36965 | TTTGTTTTTGCGCAC GCGCTTCA CCAATT TGACGCGC TTTTTTCTCATCTTC TERM 2640 1689303 - 1689313 + g 71 -6.8 -4.20797 | opp_overlap 1689303 AGAAGGGTTGCAACA GGTC CGC GACC TTTATCTAATTTTGC TERM 2641 1690167 - 1690178 + g 78 -2.2 -5.58051 | ACTTCTTGTTGCGGA GCTT GCTG AGGC TTTTGTTTTTTATTT TERM 2642 1690205 - 1690219 + g 73 -2.9 -5.16151 | ATTTTTTTTGTTATT GAAAA TTTTC TTTTC TTTTTGTTGGATTTG Aflv_1696 1690864 - 1690565 - | Ribosomal protein HS6-type (S12/L30/L7a) Aflv_1697 1691171 - 1690854 - | Predicted nucleic-acid-binding protein implicated in transcription termination nusA 1692243 - 1691140 - | Transcription elongation factor Aflv_1699 1692873 - 1692271 - | Uncharacterized conserved protein, YhbC family TERM 2643 1692430 - 1692445 + g 71 -3.3 -5.00616 | GTCAATCGGTTCATA CGTTT TCACAT AAACG TTTTTTCCGACGGCG TERM 2644 1692786 - 1692767 - G 91 -8.6 -4.68103 | overlap 1692769 CTAACTGCAAGAAAA TCCCTTGC AACG GCAAGGAA TCTCGAATCAATACG TERM 2645 1692805 - 1692822 + g 100 -11.3 -4.93318 | opp_overlap 1692805 CGAATCAATACGAAA GAGTGGG TTTC CCCACTC TTTTTGTCCATTATC TERM 2646 1692822 - 1692805 - G 100 -11.3 -3.97209 | opp_overlap 1692805 CGAATCAATACGAAA GAGTGGG TTTC CCCACTC TTTTTGTCCATTATC polC 1697182 - 1692890 - | DNA polymerase III, alpha subunit (gram-positive type) TERM 2647 1693375 - 1693361 - G 70 -7.8 -3.60098 | overlap 1693342 ATGGTGTACTTTAAA GTACGC AAT GCGCAC GGCCATTAACACGTA TERM 2648 1695151 - 1695141 - G 73 -5.4 -4.65916 | overlap 1695149 1695150 TGTACTTCAAGAAAA TCGT AAA ACGA TGCAATCGCCTCCGC TERM 2649 1695524 - 1695535 + g 71 -3 -5.00884 | ATGGTGTTGGGTTAA TTCA ATAT TGAA TTTTTTACAAAGCGT TERM 2650 1696303 - 1696270 - G 73 -8.9 -3.47227 | gap 1, opp_overlap 1696292 1696293, overlap 1696264 1696272 1696273 TCGCAATGAGCACAA GATCGCGCAC-AAACG TAT CGTTTTGCGCGCTACC GCGCACTTTAACCCA TERM 2651 1696299 - 1696272 - G 74 -9.2 -3.30731 | gap 1, opp_overlap 1696292 1696293, overlap 1696270 1696264 1696273 GCAATGAGCACAAGA TCGCGCACAAACG TAT CGTTT-TGCGCGC TACCGCGCACTTTAA TERM 2652 1696298 - 1696273 - G 88 -12.7 -2.57957 | gap 1, opp_overlap 1696292 1696293, overlap 1696272 1696270 1696264 CAATGAGCACAAGAT CGCGCACAAACG TAT CGTTT-TGCGCG CTACCGCGCACTTTA TERM 2653 1696293 - 1696308 + g 74 -10.4 -2.72144 | opp_overlap 1696273 1696272 1696270 1696264, overlap 1696292 ACAAACGTATCGTTT TGCGCG CTAC CGCGCA CTTTAACCCACATGC TERM 2654 1696569 - 1696555 - G 72 -10 -2.77182 | opp_overlap 1696554 TTTGATAGCCAATTA CAAGCG GGC CGCTTG CTTCGGTTATGTTAG TERM 2655 1697234 - 1697263 + r 73 -7.1 -4.13014 | gap 1, opp_overlap 1697236 1697242, overlap 1697240 1697244 TTGGGAGTGATAGAC GACAGAAAGAGGGG AAT CCCC-CTCTCTGCC TTTTACAAATATCGG TERM 2656 1697261 - 1697236 - R 81 -11.9 -2.7035 | opp_overlap 1697234 1697240 1697244, overlap 1697242 GGGAGTGATAGACGA CAGAAAGAGGG GAAT CCCCCTCTCTG CCTTTTACAAATATC TERM 2657 1697257 - 1697242 - R 86 -10.4 -4.12475 | opp_overlap 1697240 1697234 1697244, overlap 1697236 GATAGACGACAGAAA GAGGGG AATC CCCCTC TCTGCCTTTTACAAA proS 1698972 - 1697266 - | Prolyl-tRNA synthetase TERM 2658 1697417 - 1697405 - G 72 -7.7 -3.76492 | opp_overlap 1697404 1697405 GGTAAGCCGATTAAA TCGCT GTC AGCGA ATTTCACGCCTGGAC Aflv_1702 1700257 - 1698989 - | Predicted membrane-associated Zn-dependent protease TERM 2659 1699739 - 1699755 + g 95 -9.4 -4.56775 | AGCGAAAATGGCCAT CGCTCG CTGCC CGAGCG TTTTTGAACCAAACT TERM 2660 1699783 - 1699795 + g 70 -7.7 -3.63694 | ACTGACGATGATACG GTGCA ATT TGCAC TTCTTCCCGATCAAT dxr 1701415 - 1700261 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2661 1700449 - 1700466 + g 71 -4.1 -4.81685 | opp_overlap 1700446, overlap 1700446 CCGCATTTAATACGG TCGGC ATCGTTCC GCCGA TTTTTCCTGCTTCAT cdsA 1702189 - 1701422 - | Phosphatidate cytidylyltransferase (CDP-diglyceride synthase) uppS 1702960 - 1702196 - | Undecaprenyl pyrophosphate synthase TERM 2662 1702820 - 1702835 + g 77 -6.1 -4.58663 | ATAATGTCCGGCCAT GCGTG GCAATG CACGC TTTTTCGCCCATCGT TERM 2663 1703051 - 1703032 - R 100 -10.8 -5.2422 | opp_overlap 1703031 1703030 AATTATAGCAAAAAA CCCTCTAT AAAC ATAGAGGG ACTTATACTTCCATG frr 1703605 - 1703054 - | Ribosome recycling factor pyrH 1704329 - 1703607 - | Uridylate kinase TERM 2664 1704381 - 1704358 - R 100 -14 -4.56775 | opp_overlap 1704358 ACCGTTCTTTAAAAA TAGGGAACAC GTAT GTGTTCCCTA TTTGTCTTCATTACT TERM 2665 1704358 - 1704381 + r 100 -14 -4.28323 | opp_overlap 1704358 ACCGTTCTTTAAAAA TAGGGAACAC GTAT GTGTTCCCTA TTTGTCTTCATTACT tsf 1705282 - 1704392 - | Translation elongation factor Ts TERM 2666 1705390 - 1705361 - R 100 -11.6 -5.40474 | opp_overlap 1705361 ACTTTCTTAAAAAAA GGTGATAAAAGG CTTCCC CCTCTTATCACC TTTCACATGCTTACT TERM 2667 1705361 - 1705390 + r 79 -9.4 -3.64162 | opp_overlap 1705361 ACTTTCTTAAAAAAA GGTGATAAAAGG CTTCCC CCTCTTATCACC TTTCACATGCTTACT rpsB 1706108 - 1705401 - | Ribosomal protein S2 TERM 2668 1705553 - 1705567 + g 73 -8.6 -3.62354 | overlap 1705551 AGTTTGTATCCACGA TTCCGA TGA TCGGAA TGTTTAATTTGCGAG Aflv_1710 1706727 - 1706248 - | hypothetical protein TERM 2669 1706371 - 1706382 + g 70 -5.8 -4.39226 | opp_overlap 1706362, overlap 1706364 CGAAACGAGCGACTC GAGC GGTT GCTC TTCTTTTGTAGTTGT Aflv_1711 1707022 - 1706711 - | hypothetical protein sigD 1707737 - 1707006 - | DNA-directed RNA polymerase specialized sigma subunit Aflv_1713 1708084 - 1707770 - | hypothetical protein cheD 1708596 - 1708084 - | Chemotaxis protein; stimulates methylation of MCP proteins by CheR TERM 2670 1708234 - 1708205 - G 93 -10.9 -4.19506 | gap 1, overlap 1708206 ATTGGAATGCGAAAA CGTTGAAGCTGCTC GCG GA-CAGCTTCAACA TTGCGCGGCCCAATG TERM 2671 1708233 - 1708206 - G 86 -12.2 -3.11222 | gap 1, overlap 1708205 TTGGAATGCGAAAAC GTTGAAGCTGCTC GCG GA-CAGCTTCAAC ATTGCGCGGCCCAAT cheC 1709212 - 1708577 - | Chemotaxis protein phosphatase CheC TERM 2672 1709050 - 1709024 - G 80 -11.7 -2.59564 | opp_overlap 1709022, overlap 1709023 1709026 1709047 AAAAACAGCAGCAAC GACATTGTCAG CTCCT CCGACAATGTC CATCATTTCATCAAA TERM 2673 1709079 - 1709047 - G 74 -9.3 -3.28924 | opp_overlap 1709022, overlap 1709026 1709024 1709023 1709072 CAGCTCCTCCGACAA TGTCCATCATTTCAT CAA ATGAAATGATGCGCA CATCCGGAATCGTCA cheW 1709651 - 1709220 - | Chemotaxis signal transduction protein: modulation of CheA activity in response to attractants TERM 2674 1709538 - 1709554 + g 70 -9.4 -2.77437 | overlap 1709540 TTTCACATATTTCGG CACGCG AGGAA CGCGTG TAATATGTTGAATTT cheA 1711707 - 1709677 - | Chemotaxis protein histidine kinase cheB 1712774 - 1711704 - | Chemotaxis response regulator CheB TERM 2675 1711852 - 1711839 - G 71 -6.7 -4.08144 | opp_overlap 1711838 1711839, overlap 1711832 TTCAGCAATGACAAA CGTCT TGCC AGACG CTTTTAACTGTTTTA TERM 2676 1712506 - 1712550 + g 78 -2.3 -5.48825 | gap 1, overlap 1712509 AAAATGGTGTTTTCC GCTCCTT-CTGTCGTTGT ACTTGAAATC ATAACGACAGGAAGTGGC TTTTTTTGCATAATA TERM 2677 1712629 - 1712641 + g 84 -6.3 -5.01732 | GTCACAACATCCGGA TTGAG TTG CTCAA TTTTTTGCAACGCTT Aflv_1719 1713656 - 1712787 - | Antiactivator of flagellar biosynthesis FleN, an ATPase TERM 2678 1712860 - 1712881 + g 73 -10.1 -2.94144 | overlap 1712852 1712857 TGCTCCTCGTGTTCC CCGTTCGCT AAGT AGCGATCGG TCATTTGCATAAGCG flhF 1714759 - 1713653 - | Flagellar GTP-binding protein FlhF TERM 2679 1714131 - 1714147 + g 85 -4.4 -5.54264 | ATGCGATACGTATCT GTCGTA ATAAA TGCGAC TTTTTTTCGGTGTTT TERM 2680 1714318 - 1714331 + g 87 -4.5 -5.45726 | GCCATTGCTTCACCT CGTCA TATG TGGCG TTTTTTTCCGATGTA flhA 1716792 - 1714756 - | Flagellar biosynthesis pathway, component FlhA flhB 1717905 - 1716823 - | Flagellar biosynthesis pathway, component FlhB fliR 1718686 - 1717907 - | Flagellar biosynthesis pathway, component FliR fliQ 1718961 - 1718683 - | Flagellar biosynthesis pathway, component FliQ TERM 2681 1718791 - 1718822 + g 93 -11.8 -3.69094 | opp_overlap 1718790 1718799, overlap 1718799 TAACACGGCAACAAT TTTAGGAACAAACG CTAA CGTTTGTTCTTGAA TTTGCGTCGTCGCTT TERM 2682 1718799 - 1718814 + g 72 -7.6 -3.78234 | opp_overlap 1718799 1718790, overlap 1718791 CAACAATTTTAGGAA CAAACG CTAA CGTTTG TTCTTGAATTTGCGT fliP 1719632 - 1718967 - | Flagellar biosynthesis pathway, component FliP fliZ 1720251 - 1719625 - | Flagellar biogenesis protein FliZ TERM 2683 1720047 - 1720037 - G 86 -6.8 -5.0095 | opp_overlap 1720036 AAAAATATAACAAAA GCAG TTG CTGC AATTAGTTTGACGAA TERM 2684 1720106 - 1720117 + g 71 -4.4 -4.79953 | overlap 1720089 GAAACAGCTGCCGTT TGAG TTGC CTCA TTTGTTTGTTGTTCT cheY 1720623 - 1720264 - | Chemotaxis response regulator CheY fliY 1721794 - 1720643 - | Flagellar motor switch protein FliY TERM 2685 1721295 - 1721308 + g 71 -2.3 -5.14965 | AAATGTAAACTTGGT GGCGA AATA TCGAC TTTTTTACTAAAGAT fliM 1722791 - 1721784 - | Flagellar motor switch protein FliM TERM 2686 1722049 - 1722060 + g 85 -2.2 -5.88197 | GTCGCCACTTCTTCA GGTT CACG AGCC TTTTTTTGTGTTTGC TERM 2687 1722399 - 1722414 + g 78 -9 -3.78811 | opp_overlap 1722401 CAATACGCGGTCAAG CATCGC ATAG GCGATG TTTGGGTTGACTTCT fliL 1723260 - 1722814 - | Flagellar basal body-associated protein FliL TERM 2688 1722878 - 1722891 + gr 76 -2.3 -5.36441 | overlap 1722879 TGCATAAGCTCATTG ATGCG TTCA CGCAA TTTTTTCTCTAGGAG Aflv_1731 1723456 - 1723229 - | Flagellar protein FlbD Aflv_1732 1724883 - 1723501 - | Flagellar hook protein FlgE Aflv_1733 1725322 - 1724960 - | Putative flagellar hook associated protein Aflv_1734 1725827 - 1725336 - | Flagellar hook capping protein fliK 1727112 - 1725814 - | Flagellar hook-length control protein FliK TERM 2689 1726191 - 1726169 - G 70 -10 -2.52676 | CATCGCGTGAATTGA CTTGAACGAA CAA TTCGTTCAAA CTGTGCGACAAACGT Aflv_1736 1727723 - 1727109 - | hypothetical protein TERM 2690 1727243 - 1727258 + g 73 -9 -3.53247 | overlap 1727241 CTTGATCTGACATTT GCGGAA TAAT TTCCGC TGCTTTTTTTGGTGA fliJ 1728170 - 1727727 - | Flagellar biosynthesis chaperone FliJ fliI 1729491 - 1728178 - | Flagellar biosynthesis/type III secretory pathway ATPase FliI TERM 2691 1729512 - 1729541 + r 73 -9.4 -3.1247 | overlap 1729505 CGCCCCCTCAATTCG CTCAAGCAATTG TAGTTT CAATTGCTCGAG TTGCGTGTCAACGCT fliH 1730330 - 1729488 - | Flagellar assembly protein FliH fliG 1731288 - 1730251 - | Flagellar motor switch protein FliG fliF 1732864 - 1731275 - | Flagellar basal body M-ring protein FliF fliE 1733184 - 1732891 - | Flagellar hook-basal body protein FliE TERM 2692 1732962 - 1732974 + g 74 -4.8 -4.83169 | opp_overlap 1732962 1732970 CAATTGCTAATTGAA GCGA CACAC TCGC TTTTTGTGAAGCGAT flgC 1733634 - 1733197 - | Flagellar basal body rod protein FlgC flgB 1734018 - 1733638 - | Flagellar basal body rod protein FlgB TERM 2693 1734131 - 1734158 + r 71 -5 -4.49314 | gap 1, opp_overlap 1734131 1734133, overlap 1734131 1734128 1734133 CATACTTTAACAAAA G-AGGCATCTT CGCGAGA AAGATGCCTGC TTGTTTTTAATGGTG TERM 2694 1734157 - 1734131 - R 75 -5.9 -4.66987 | opp_overlap 1734131 1734131 1734128 1734133, overlap 1734133 CATACTTTAACAAAA GAGGCATCTTC GCGAG AAAGATGCCTG CTTGTTTTTAATGGT TERM 2695 1734155 - 1734133 - R 77 -8.5 -3.94438 | opp_overlap 1734131 1734131 1734128 1734133, overlap 1734131 TACTTTAACAAAAGA GGCATCTTC GCGAG AAAGATGCC TGCTTGTTTTTAATG codY 1734944 - 1734165 - | Pleiotropic transcriptional repressor CodY clpY 1736366 - 1734957 - | ATP-dependent protease HslVU (ClpYQ), ATPase subunit TERM 2696 1735636 - 1735646 + g 85 -4 -5.55855 | ACATGACGAGCTTCT TTGA CTT TCAA TTTTCTTTTTTTCCG TERM 2697 1735835 - 1735847 + g 70 -7.7 -3.72027 | TTTGTCTCCGCTTCT CAGCA ATA TGCTG TTCTTCGTGCCCGCT clpQ 1736898 - 1736350 - | ATP-dependent protease HslVU (ClpYQ), peptidase subunit codV 1737809 - 1736907 - | Site-specific recombinase XerD TERM 2698 1737857 - 1737825 - R 100 -15.1 -3.34043 | opp_overlap 1737824 1737827 TCGATCACCCCATAA GAGCTACTAAATAGT AGC ACAATTTAGTAGCTC TTGCAATGAATTTCA TERM 2699 1737827 - 1737855 + r 82 -11.9 -3.07236 | opp_overlap 1737825, overlap 1737824 GATCACCCCATAAGA GCTACTAAATAGT AGC ACAATTTAGTAGC TCTTGCAATGAATTT gid 1739168 - 1737870 - | NAD(FAD)-utilizing enzyme possibly involved in translation (glucose-inhibited division protein) TERM 2700 1738392 - 1738359 - G 71 -8.9 -3.37474 | gap 1 GACAATATTGTACAA CGTTCCAGCCGCATCA TCT TGACGAAGCTGG-ACG ACGGCAAAAGGACGT TERM 2701 1739193 - 1739213 + r 72 -8.3 -3.48182 | opp_overlap 1739192 1739193 CTCCTCGATAAAATG GGTGAGG GTATGCG CCTCACC TTACTGTTGTTCGTT TERM 2702 1739238 - 1739262 + r 71 -4.2 -4.95854 | overlap 1739240 TTCGTTATATTCGCA TTGCGTGCAT TGAAT ATGCACGCTC TTTTTCCCTTTTTTC topA 1741283 - 1739214 - | DNA topoisomerase TERM 2703 1739240 - 1739260 + g 90 -11.2 -4.05905 | overlap 1739238 CGTTATATTCGCATT GCGTGCAT TGAAT ATGCACGC TCTTTTTCCCTTTTT TERM 2704 1740528 - 1740542 + g 70 -5.7 -4.39347 | CGATGTAATAAACGG CGCAA CAGGA TTGCG TTTTCGCTCTTTTTT TERM 2705 1741045 - 1741064 + g 82 -5.8 -5.02476 | CGATCCGGGTCAGCC GCAAGAAA TACT TTTTTTGC TTTTTTCGCCGCTGT Aflv_1751 1742275 - 1741388 - | Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake TERM 2706 1741553 - 1741570 + g 72 -7.7 -3.80625 | AAAATGGGCGGTGAT GAGCGAG CCGC TTCGCTC TTTCGCTTGTACAAC TERM 2707 1741897 - 1741923 + g 77 -4.5 -4.97383 | gap 1 CGATTCCTTGGCGCG TTGGCGTCCGTG TCCC TACG-ACGCTAA TTATTTTTTTTCGCT TERM 2708 1742326 - 1742299 - R 100 -14.3 -4.87665 | opp_overlap 1742293 1742292 TCCTATTTATAAAAA TCGTCCTAAGG TTTGTG CCTTAGGACGA TTCGCAATTATTAAT TERM 2709 1742342 - 1742352 + r 70 -5.4 -4.34402 | opp_overlap 1742342 TTCGCAATTATTAAT GTGT TTT ACAC TTTTCGTATAAGCCG sucD 1743239 - 1742337 - | Succinyl-CoA synthetase, alpha subunit sucC 1744464 - 1743259 - | Succinyl-CoA synthetase, beta subunit TERM 2710 1744524 - 1744509 - R 71 -4.8 -4.61868 | CATTTAGACAGAAAA TTCTTT AACA AAAGAA AAAGAAGCGATCGTT TERM 2711 1744550 - 1744528 - R 83 -3.4 -5.62288 | overlap 1744531 TTAACAAAAGAAAAA GAAGCGAT CGTTGTC ATCGCCCC TCCACTTTTTTTTCG Aflv_1754 1744804 - 1744541 - | Uncharacterized protein containing cytoplasmic domain of flagellar protein FhlB Aflv_1755 1745967 - 1744801 - | hypothetical protein TERM 2712 1745842 - 1745858 + g 76 -2.9 -5.30575 | overlap 1745845 GATCCGAACGAGCGC TGTCCGA TCT TCGGTTA TTTTTTCGATTTTTC TERM 2713 1745845 - 1745855 + g 79 -6.8 -4.68528 | overlap 1745842 CCGAACGAGCGCTGT CCGA TCT TCGG TTATTTTTTCGATTT TERM 2714 1745886 - 1745906 + g 72 -9.7 -2.78996 | opp_overlap 1745883, overlap 1745885 1745888 TTCCATAAATGATGT CACCAACGT GGA ACGTCGGTG CTTTCGGTAAACGTA rnhB 1746748 - 1745969 - | Ribonuclease HII TERM 2715 1746808 - 1746784 - R 100 -5.8 -5.9003 | gap 1, overlap 1746788 AAATCAACAAAAAAA TAAAGGCTCGC TTAT GCGAACC-TTA CAGACGGTCAAAACT TERM 2716 1746805 - 1746788 - R 93 -9.1 -5.33131 | overlap 1746784 CAACAAAAAAATAAA GGCTCGC TTAT GCGAACC TTACAGACGGTCAAA Aflv_1757 1747660 - 1746806 - | Predicted GTPase Aflv_1758 1748227 - 1747676 - | Signal peptidase I TERM 2717 1748281 - 1748261 - R 100 -14.1 -4.62872 | ATGAATGTTGAAAAA GGAGCTTGA TGA TCAAGCTCC TCGCAATCATGTCTT rplS 1748674 - 1748300 - | Ribosomal protein L19 trmD 1749507 - 1748770 - | tRNA-(guanine-N1)-methyltransferase TERM 2718 1749032 - 1749017 - G 71 -9 -3.35278 | opp_overlap 1749006, overlap 1749006 1749003 TCAAGCATAGAGGAA TGCTCG TTGC CGAGCA CGCCAGGAAGCAAAC TERM 2719 1749200 - 1749213 + g 95 -3.1 -6.06529 | gap 1, overlap 1749190 ATGTGTCGTTCTTTA GC-GAG TTC CTCCGC TTTTTTTTGTGTATA rimM 1750028 - 1749504 - | RimM protein, required for 16S rRNA processing Aflv_1762 1750408 - 1750025 - | hypothetical protein TERM 2720 1750409 - 1750419 + r 73 -8.2 -3.85698 | TTGAATGATTTTCAT GGCG CAC CGCC TTTCTGAACGAAAAA TERM 2721 1750451 - 1750436 - R 80 -4.6 -5.26875 | opp_overlap 1750434 1750436 1750437, overlap 1750437 TTCTGAACGAAAAAA GGGGAG GTGT CTTCCC TCTCCCTTACTCTTC Aflv_1763 1750685 - 1750458 - | Predicted RNA-binding protein (contains KH domain) TERM 2722 1750514 - 1750542 + g 89 -7.5 -5.05782 | gap 1, opp_overlap 1750514 TGGCTGCTTGAACAA CGGTGCGAATGG CTTGAA TCATTCGC-CCG TTTTTTCCGATCACT TERM 2723 1750712 - 1750730 + r 85 -9 -4.17048 | CGTACTTTAAGTTGT GGAATTTT TCT AAAATTCC TTGTTTTGAAAGCAA rpsP 1750961 - 1750689 - | Ribosomal protein S16 TERM 2724 1751040 - 1751050 + r 71 -4 -4.90778 | opp_overlap 1751029, overlap 1751029 TAAAGTGTTTTTTCT TAAC ACT GTTA TTTTGTTTACATGAA ffh 1752397 - 1751057 - | Signal recognition particle GTPase TERM 2725 1751417 - 1751427 + g 91 -6.8 -5.45652 | opp_overlap 1751417 GTCAAGTGTAAATGA TGCG GTG CGCA TTTTTTGTTCGAGCT Aflv_1766 1752742 - 1752410 - | hypothetical protein ftsY 1753812 - 1752814 - | Signal recognition particle GTPase smc 1757379 - 1753819 - | Chromosome segregation ATPase TERM 2726 1755015 - 1755031 + g 75 -5.1 -4.83615 | ATTGTTTCACTTGCT CATCGAT AGA AACGATG TTTTTCTCAAGCATA TERM 2727 1756051 - 1756062 + g 90 -4.4 -5.74684 | GATGCGCTCTTGCAA CTCA TGAA TGAG TTTTTGTTTTTGTTC TERM 2728 1756245 - 1756288 + g 71 -2.4 -5.10656 | gap 1, overlap 1756250 CGCTTTTTAGCCGTT CAATTTCCTCCTCCGCTTTCG GAC CGTAAGCAGAA-AGGACGTTG TTTTGTTCTTTTAAT Aflv_1769 1758691 - 1757516 - | Transposase rnc 1759551 - 1758835 - | DsRNA-specific ribonuclease TERM 2729 1759612 - 1759592 - R 89 -9.7 -4.23207 | opp_overlap 1759592 TAAAAAGCATAGAAA GCCCCGCTT ACA AAACGGGAC TTTACTTATTATGAT acpA 1759866 - 1759621 - | Acyl carrier protein fabG 1760653 - 1759916 - | 3-oxoacyl-[acyl-carrier-protein] protein reductase fabD 1761601 - 1760657 - | (acyl-carrier-protein) S-malonyltransferase TERM 2730 1760854 - 1760866 + g 76 -7.7 -4.21322 | GAGAGTATAACTGTT CAACG AGA CGTTG TTTGATTTCTGTTGG TERM 2731 1761016 - 1761040 + g 80 -2.7 -5.45802 | overlap 1761017 ACGGCCCGCTTACTT CGAGCGGAATG ACT CGCTTCGCTCC TTTTTCTTTTGCCAG TERM 2732 1761336 - 1761361 + g 70 -5.5 -4.47007 | gap 1, overlap 1761340 1761348 CCAAGGCTATGTCCT GCGACATAATGC GGA GCAATATGT-GC TTCTTTTACTTTTTG TERM 2733 1761348 - 1761364 + g 71 -4.4 -4.77757 | overlap 1761340 1761336 CCTGCGACATAATGC GGAGCA ATATG TGCTTC TTTTACTTTTTGCAA plsX 1762599 - 1761610 - | Fatty acid/phospholipid biosynthesis enzyme Aflv_1775 1763252 - 1762596 - | Uncharacterized protein, possibly involved in aromatic compounds catabolism recG 1765304 - 1763256 - | RecG-like helicase TERM 2734 1763376 - 1763341 - G 73 -8.2 -3.66908 | gap 1, opp_overlap 1763340 1763339 1763352 TCGCGCCAAAACGAA GGCGAGGCAATGAGGCG TTC CGCATC-TTGTCGCGCC ACTTCTAAAATGCGA sdaAA 1766184 - 1765297 - | L-serine dehydratase (alpha chain) sdaAB 1766945 - 1766208 - | L-serine dehydratase (beta chain) TERM 2735 1766899 - 1766928 + g 88 -12.3 -2.7035 | opp_overlap 1766904, overlap 1766904 TTTGTTATCTTCATG AAAAAGAAGGGGA ACGT TCCCCTTCTTTTA TCGTATGTGAATAGC TERM 2736 1766904 - 1766923 + g 100 -12.2 -4.53163 | opp_overlap 1766904, overlap 1766899 TATCTTCATGAAAAA GAAGGGGA ACGT TCCCCTTC TTTTATCGTATGTGA TERM 2737 1766923 - 1766904 - G 100 -12.2 -4.72986 | opp_overlap 1766904 1766899 TATCTTCATGAAAAA GAAGGGGA ACGT TCCCCTTC TTTTATCGTATGTGA Aflv_1779 1768613 - 1766955 - | Predicted kinase Aflv_1780 1768993 - 1768631 - | hypothetical protein TERM 2738 1769321 - 1769301 - g 82 -10.5 -3.70902 | opp_overlap 1769300 1769301 CGCCGTACATGGAAA GCGAACCTT CAA AAAGTTCGC ATTTTAGTTGACGGA rpmB 1769190 - 1769399 + | Ribosomal protein L28 TERM 2739 1769434 - 1769402 - T 81 -11.6 -3.03338 | gap 1, opp_overlap 1769402 1769409, overlap 1769409 AGAACGTGTGTAATA GA-AAAAAGCACCAA TTAT TTGGTGCTTTTTATC CTTTTTTGAACGAGT TERM 2740 1769402 - 1769434 + T 88 -11.6 -3.60316 | gap 1, opp_overlap 1769402 1769409, overlap 1769409 AGAACGTGTGTAATA GA-AAAAAGCACCAA TTAT TTGGTGCTTTTTATC CTTTTTTGAACGAGT TERM 2741 1769409 - 1769426 + T 93 -9.9 -5.14894 | opp_overlap 1769402 1769409, overlap 1769402 GTGTAATAGAAAAAA GCACCAA TTAT TTGGTGC TTTTTATCCTTTTTT TERM 2742 1769426 - 1769409 - T 100 -9.9 -5.47159 | opp_overlap 1769409 1769402, overlap 1769402 GTGTAATAGAAAAAA GCACCAA TTAT TTGGTGC TTTTTATCCTTTTTT spoVM 1769534 - 1769430 - | Stage V sporulation protein M required for normal spore cortex and coat synthesis Aflv_1783 1770231 - 1769584 - | Thiamine pyrophosphokinase TERM 2743 1770268 - 1770246 - R 100 -12.8 -4.20367 | CCTCCTAAGAAAGAA GGATGTGTCA AGA TGACACACCC TCACGAATAGCGCGA rpe 1770909 - 1770253 - | Pentose-5-phosphate-3-epimerase Aflv_1785 1771901 - 1770912 - | Predicted GTPase prkC 1773732 - 1771807 - | Serine/threonine protein kinase with three PASTA domains TERM 2744 1772970 - 1772991 + gr 73 -7.3 -4.09511 | CGCTATTGTAGCGAT GCAACGG ATTTTTCG CCGTTGC TTTTAGCACAATGTT prpC 1774488 - 1773739 - | Serine/threonine protein phosphatase PP2C family TERM 2745 1774286 - 1774302 + g 75 -8.7 -3.6761 | overlap 1774285 ATTTCTGCTTGTTGC GGCGAAG TCA TTTCGCC TGTTTCTTCCCAAAA Aflv_1788 1775596 - 1774547 - | Predicted Fe-S-cluster redox enzyme TERM 2746 1774680 - 1774700 + g 72 -9.7 -2.78712 | opp_overlap 1774670 1774680 1774678, overlap 1774677 1774691 TCAAACGCAAAAATT TGTTCGCGC GGC GTGCGAACG TAGTTGCGTTCAGGC TERM 2747 1774829 - 1774845 + g 78 -4.3 -5.13473 | opp_overlap 1774829 1774830, overlap 1774830 TAAACCGTATTCAAA TGTGACG CGT CGTCCCG TTTTTTCAATGTAGT Aflv_1789 1776933 - 1775593 - | rRNA cytosine-C5-methylase TERM 2748 1776320 - 1776348 + g 93 -11.1 -4.09864 | opp_overlap 1776319 1776323 1776326, overlap 1776323 CCAATCGGAACAACG GAAGAAGGGATAG CTT CTATTCCCTCTTC TTTTAGGCGATCGAT TERM 2749 1776323 - 1776345 + g 71 -7 -4.17762 | opp_overlap 1776319 1776323 1776326, overlap 1776320 ATCGGAACAACGGAA GAAGGGATAG CTT CTATTCCCTC TTCTTTTAGGCGATC TERM 2750 1776380 - 1776402 + g 84 -9.8 -3.78004 | overlap 1776378 ACTTCTTCAACGGTT GCGCGCATGA CGT TTACGCGCGC TGTTTGTTCTGGTGG fmt 1777870 - 1776926 - | Methionyl-tRNA formyltransferase TERM 2751 1777715 - 1777740 + g 72 -9.7 -2.75297 | overlap 1777709 AATACCGTACGATTC CGCTGCCACTT TGAC AGGTGGTGGCG TCAATTGTTGTTTTC def 1778322 - 1777867 - | N-formylmethionyl-tRNA deformylase priA 1780772 - 1778358 - | Primosomal protein N' (replication factor Y) - superfamily II helicase TERM 2752 1779111 - 1779100 - G 74 -4.4 -5.00616 | opp_overlap 1779100 CCTGTTCCGAAAAAA CGAA TATG TTCG CTTTGACAAGCAGGA Aflv_1793 1781971 - 1780769 - | Phosphopantothenoylcysteine synthetase/decarboxylase TERM 2753 1782032 - 1782009 - R 86 -4.6 -5.40072 | opp_overlap 1782015, overlap 1782012 GTGTTTGTAAAAAAA TAACAACCTA AAAC TAGGTTGTCG TAAGTAGGTTATTGC TERM 2754 1782029 - 1782012 - R 88 -8.5 -4.79949 | opp_overlap 1782015, overlap 1782009 TTTGTAAAAAAATAA CAACCTA AAAC TAGGTTG TCGTAAGTAGGTTAT Aflv_1794 1782259 - 1782041 - | DNA-directed RNA polymerase, subunit K/omega TERM 2755 1782104 - 1782115 + g 71 -3 -5.00616 | AATTTCTTCTAACGC TTTG CCGA CAAA TTTTTTCGACACAGG TERM 2756 1782136 - 1782149 + g 73 -5.3 -4.74504 | TCGACACAGGTTTTT CGATT GTTA AATCG TTTTTGACTTGCAAT Aflv_1795 1782866 - 1782252 - | Guanylate kinase TERM 2757 1782731 - 1782745 + g 74 -9.2 -3.29144 | CATCCACTTCTCCTT CGCGCG GTT TGCGCG TTGTGACGGAAATCG Aflv_1796 1783775 - 1782897 - | Uncharacterized stress-induced protein TERM 2758 1783845 - 1783807 - RH 85 -11.3 -3.29144 | opp_overlap 1783807 1783812 1783815, overlap 1783812 CTATGTTGTTGACAA TAAAAGAAGGTAATAGA TTCGC TCCATTACCCTCTTTCA TTATAACATATATCA TERM 2759 1783840 - 1783812 - RH 89 -9 -4.77165 | opp_overlap 1783807 1783812 1783815, overlap 1783807 TTGTTGACAATAAAA GAAGGTAATAGA TTCGC TCCATTACCCTC TTTCATTATAACATA Aflv_1797 1786548 - 1783879 - | Cation transport ATPase TERM 2760 1784306 - 1784317 + gH 78 -5.8 -4.77165 | GGATGGCGTGGTGGC CGTC TCAT GACG TTTTCTTCTGCCGGG TERM 2761 1784512 - 1784476 - GH 74 -9 -3.55604 | gap 1, opp_overlap 1784483 1784485 1784509, overlap 1784485 TGATGCAAGCAAATA GCGAATAAATTTACGAA TGTT TTCGTAAATGT-TTCGC CCTTCTTCAATGGCG TERM 2762 1784504 - 1784485 - GH 79 -8 -4.27007 | opp_overlap 1784483 1784485, overlap 1784476 CAAATAGCGAATAAA TTTACGAA TGTT TTCGTAAA TGTTTCGCCCTTCTT TERM 2763 1787807 - 1787795 - gR 79 -5.5 -4.86773 | CAAAAGTATCAAAAA GCGAA AAA CTCGC TTGCGATCGTCCAAG Aflv_1798 1786400 - 1788361 + | Fibronectin/fibrinogen-binding protein TERM 2764 1788370 - 1788353 - TR 89 -6.9 -5.27779 | opp_overlap 1788353, overlap 1788345 GTGAAGATGAAAAAA CCCGTCT AAGT AGGCGGG TTTTTCACACTTATC TERM 2765 1788353 - 1788370 + Tr 88 -9.1 -4.63542 | opp_overlap 1788353 1788345 GTGAAGATGAAAAAA CCCGTCT AAGT AGGCGGG TTTTTCACACTTATC TERM 2766 1788904 - 1788883 - TR 84 -6.6 -4.90906 | gap 1, opp_overlap 1788883 1788874 GTATAATATCAAAAA GGGTG-TCG CTCAT CGAACACCC TTTTTTATGCTTCTA TERM 2767 1788883 - 1788904 + Tr 93 -6.6 -5.39755 | gap 1, opp_overlap 1788883, overlap 1788874 GTATAATATCAAAAA GGGTG-TCG CTCAT CGAACACCC TTTTTTATGCTTCTA pyrE 1789541 - 1788909 - | Orotate phosphoribosyltransferase TERM 2768 1789092 - 1789079 - G 71 -4.5 -4.66163 | overlap 1789081 1789088 ATCCGTATGTAAAAA TGGCA ACGA CGCCA AGCACATGGCATCCT pyrF 1790281 - 1789523 - | Orotidine-5'-phosphate decarboxylase TERM 2769 1789566 - 1789582 + gr 81 -7.3 -4.51097 | overlap 1789556 AACCGCTCATATGCT GCATATG GAT CATGTGC TTTTGTAATGCTTCG pyrD 1791146 - 1790208 - | Dihydroorotate dehydrogenase (catalytic subunit) TERM 2770 1791092 - 1791082 - GR 71 -6.8 -3.98804 | CCAAATCCGAAACAA CCTG AAG CAGG CATAATCGGATTTTT pyrK 1791907 - 1791143 - | Dihydroorotate dehydrogenase (electron transfer subunit) TERM 2771 1791595 - 1791583 - G 78 -9.1 -3.82824 | CACCACCGACAAGAA GGGCA TGT TGCCC GCTTGAAAGAGCGGA pyrAB 1795128 - 1791904 - | Carbamoylphosphate synthase large subunit TERM 2772 1794281 - 1794309 + gr 75 -9.5 -3.36749 | opp_overlap 1794285, overlap 1794282 ATGCCGAGCGCGCGA ATGATGCGCAGCG AAG CGTTGCGCAGCAG TTGATATTCGCGATC TERM 2773 1794282 - 1794308 + gr 91 -13 -2.61728 | opp_overlap 1794285, overlap 1794281 TGCCGAGCGCGCGAA TGATGCGCAGCG AAG CGTTGCGCAGCA GTTGATATTCGCGAT TERM 2774 1794305 - 1794285 - GR 76 -11.1 -2.71364 | opp_overlap 1794282 1794281 CGAGCGCGCGAATGA TGCGCAGCG AAG CGTTGCGCA GCAGTTGATATTCGC pyrAA 1796239 - 1795088 - | Carbamoylphosphate synthase small subunit pyrC 1797465 - 1796179 - | Dihydroorotase pyrB 1798354 - 1797431 - | Aspartate carbamoyltransferase, catalytic chain TERM 2775 1798405 - 1798382 - R 100 -12.5 -5.52384 | opp_overlap 1798382 TTTTTAGTAAAAAAA CACCTTGCC GAGCGA GGCAAGGTG TTTACAAGCATGAGG TERM 2776 1798382 - 1798405 + r 90 -12.5 -3.54424 | opp_overlap 1798382 TTTTTAGTAAAAAAA CACCTTGCC GAGCGA GGCAAGGTG TTTACAAGCATGAGG pyrP 1799789 - 1798497 - | Uracil permease TERM 2777 1799853 - 1799822 - R 100 -9.6 -5.4251 | gap 1 TTTATATATAAAAAA CCCTCTTTGT-CC ACACGAA GGCACAAAGAGGG TATAGGAAACGAATC pyrR 1800465 - 1799911 - | Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase TERM 2778 1800470 - 1800493 + r 84 -12.4 -2.98823 | opp_overlap 1800470 CCTCCATACAAAAAA CCCTCTCACC GTTT GGCGAGAGGG TATATGTAGGCACAC TERM 2779 1800493 - 1800470 - R 100 -14.6 -5.36441 | opp_overlap 1800470 CCTCCATACAAAAAA CCCTCTCACC GTTT GGCGAGAGGG TATATGTAGGCACAC Aflv_1809 1801513 - 1800602 - | Pseudouridylate synthase, 23S RNA-specific TERM 2780 1801207 - 1801183 - GR 78 -9.2 -3.63569 | gap 1 GTAATGCGTTAACAA GCGTCCCGTGC ATAT GCCCGGG-CGC TGGATGAACGACCAT lspA 1801994 - 1801488 - | Lipoprotein signal peptidase TERM 2781 1802271 - 1802283 + r 71 -6.3 -4.18018 | ACGTCCGTTCGGATA GAGAA AGC TTCTC TTTTACATGACCGCA Aflv_1811 1803343 - 1802303 - | Transposase TERM 2782 1803452 - 1803433 - R 80 -6.4 -4.75308 | opp_overlap 1803433 1803432 ATGAACAGTCAAAAA CCCCCT TGAAAGAG AGGGGG GATATGTGTTATTGC ileS 1806217 - 1803461 - | Isoleucyl-tRNA synthetase TERM 2783 1805521 - 1805535 + g 85 -5.7 -5.14965 | opp_overlap 1805530 1805531, overlap 1805520 TCGTCCATGGCGTTG TCGTC CAAAT GACGA TTTTTTCGTCGCCAT TERM 2784 1806278 - 1806250 - R 100 -10.4 -5.96894 | gap 1, overlap 1806271 ATGTAAATAAAAAAA CCTTCTCATGCCC AAAA GGG-ACGAGAAGG TCTCGCGGTACCACC divIVA 1807042 - 1806524 - | Cell division initiation protein TERM 2785 1806683 - 1806696 + g 82 -8.1 -4.56775 | TTCTTCCACTTCCAT CGCGA TTTT TCGCG TTTTTGCGAGCGCCT TERM 2786 1806701 - 1806731 + g 74 -4.7 -4.84761 | gap 1 GATTTTTCGCGTTTT TG-CGAGCGCCTCA CTAA TGATGCGATCGGCA TTTTTCTCCGCCTCT Aflv_1814 1807864 - 1807091 - | Uncharacterized conserved protein, contains S4-like domain TERM 2787 1807561 - 1807537 - G 95 -9.2 -4.431 | CACCGAGTGACAAAA GGGCACCGAG CACGT CACGATGCCC GAGTGTAACAAATTT Aflv_1815 1808145 - 1807864 - | Predicted integral membrane protein Aflv_1816 1808564 - 1808139 - | hypothetical protein TERM 2788 1808329 - 1808346 + g 73 -2.6 -5.1101 | opp_overlap 1808341, overlap 1808330 ACACGATGAACGTTT ACGACG ACAGCA CGTCGA TTTTTTAAATGGTCG Aflv_1817 1809262 - 1808561 - | Predicted enzyme with a TIM-barrel fold TERM 2789 1808751 - 1808733 - G 71 -6.6 -4.11484 | overlap 1808735 CGCAACGTCCGAAAA CAGCGACG AAT CGTCGCCT CATCGTCCGTATATG TERM 2790 1808749 - 1808735 - G 90 -11.4 -3.6543 | overlap 1808733 CAACGTCCGAAAACA GCGACG AAT CGTCGC CTCATCGTCCGTATA Aflv_1818 1810076 - 1809246 - | Multicopper polyphenol oxidase (laccase) TERM 2791 1809686 - 1809671 - G 74 -6.1 -4.5187 | GCGAAAAAAAGTAAA GCGGA ACGCAA TCCGC AAAACAAAGCGCCAA TERM 2792 1810023 - 1810010 - G 71 -3.1 -4.9448 | gap 1 ATCCATCAAACAAAA GCAACG ACT CGT-GC GCTTGTCGAAATATT Aflv_1819 1810358 - 1810116 - | Protein implicated in RNA metabolism, contains PRC-barrel domain TERM 2793 1810459 - 1810442 - R 90 -8.4 -5.06585 | opp_overlap 1810441 GAAAGCATAGAAAAA CCCCCA GCTGTG TGGGGG ATGTTACCATTGAAT TERM 2794 1810470 - 1810485 + r 71 -4.8 -4.49556 | GGGGGATGTTACCAT TGAATA TTTT TATTCA TTTGTTTAATGGCCG sigG 1811242 - 1810463 - | DNA-directed RNA polymerase specialized sigma subunit sigG sigE 1812027 - 1811308 - | DNA-directed RNA polymerase specialized sigma subunit sigE spoIIGA 1813164 - 1812076 - | Stage II sporulation protein G (protease) TERM 2795 1813101 - 1813083 - GR 100 -8.1 -5.96894 | opp_overlap 1813083 ATGGAAATAAAAAAA CGCCCAC ACGTA GTGAGCG TTTTTTCTTAACGGC TERM 2796 1813083 - 1813101 + gr 90 -5.9 -5.4505 | opp_overlap 1813083 ATGGAAATAAAAAAA CGCCCAC ACGTA GTGAGCG TTTTTTCTTAACGGC ftsZ 1814245 - 1813109 - | Cell division GTPase TERM 2797 1813788 - 1813802 + gr 70 -5.6 -4.32951 | overlap 1813770 GCAATACCACTTGCC GCTTGC ATC GCACGC TTTCTTCCTTCGAAT ftsA 1815534 - 1814254 - | Cell division ATPase FtsA TERM 2798 1814327 - 1814341 + g 80 -2.7 -5.47399 | TGTTTCGGTTTTGCT GGCGC TTTAT GCACC TTTTTTTCCGGTTGG sbp 1815983 - 1815615 - | Uncharacterized conserved protein (small basic protein) Aflv_1826 1816696 - 1815980 - | hypothetical protein Aflv_1827 1817420 - 1816707 - | hypothetical protein divIB 1818171 - 1817383 - | Cell division septal protein TERM 2799 1817725 - 1817709 - GR 72 -6.5 -4.26903 | opp_overlap 1817708 TCCATCCGACTAAAA TCGGAGC ATC GCTCGGA ATCACTTGTTTCGCA TERM 2800 1818242 - 1818216 - R 81 -5.9 -5.06116 | opp_overlap 1818216 AAAATAACAAGAAAA CTAACGGCG CATGTCAGC CACCGTTAG TTCATCATCTCCATT murB 1819210 - 1818302 - | UDP-N-acetylenolpyruvoylglucosamine reductase murG 1820342 - 1819251 - | UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 2801 1819512 - 1819497 - G 71 -9 -3.24146 | opp_overlap 1819490, overlap 1819496 GCTCGGAATTAAAAT GCTTGG AATG CCAAGC GCTGTAATTTCTGCG TERM 2802 1820375 - 1820397 + r 86 -10.6 -3.83205 | opp_overlap 1820376, overlap 1820376 GAAAGTAACAGAAGA AGCTGACTTC CGA GAAGTCAGCC TTTAATATCGCGCAT TERM 2803 1820396 - 1820376 - R 100 -14.1 -4.01137 | opp_overlap 1820375 1820376 AAAGTAACAGAAGAA GCTGACTTC CGA GAAGTCAGC CTTTAATATCGCGCA TERM 2804 1820376 - 1820396 + r 93 -14.1 -2.89602 | opp_overlap 1820376, overlap 1820375 AAAGTAACAGAAGAA GCTGACTTC CGA GAAGTCAGC CTTTAATATCGCGCA spoVE 1821514 - 1820399 - | Stage V sporulation protein E required for spore cortex peptidoglycan synthesis TERM 2805 1821332 - 1821320 - G 93 -4.1 -5.86061 | GTTCATGAAAAAAAA CATCG CGA CAATG CCGACCCCTGCGAAC murD 1822875 - 1821532 - | UDP-N-acetylmuramoylalanyl-D-glutamate ligase TERM 2806 1821716 - 1821726 + g 71 -8.2 -3.47218 | TGTATTCCTGCTTCA CGCG CAA CGCG TTCAATTTTTGGTGC TERM 2807 1822010 - 1822032 + g 71 -8.4 -3.41023 | overlap 1822009 TCTGCACCTGCGAGT TTTGCTGCTG CAA CAGCGGCCAA TATATTTTCGAGATT TERM 2808 1822167 - 1822178 + g 84 -3.6 -5.49729 | opp_overlap 1822161, overlap 1822164 CAGAAAACGGAACGT GTCG TGCG CGGC TTTTTTTCGCTAATT mraY 1823840 - 1822866 - | UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase TERM 2809 1823814 - 1823802 - G 70 -5.5 -4.4634 | AACTGTAATAATAAA GGCAA GCC CTGCC GTGAACAAAATGACT murE 1825330 - 1823864 - | UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase TERM 2810 1824554 - 1824579 + g 88 -3.3 -5.86465 | gap 1 TTTATGATGAATGCC GTAC-GTCACAA CTG TTGCGGCCGTAC TTTTTTTATATTCTT TERM 2811 1825400 - 1825371 - R 83 -4.9 -5.20783 | opp_overlap 1825374, overlap 1825374 ATCTAAACAGAAAAA GAAGCCATGAGGA TACT TCCTCTAGGCTTT ACCGTTTCGTTCCAA TERM 2812 1825397 - 1825374 - R 81 -6.6 -4.67478 | opp_overlap 1825374, overlap 1825371 TAAACAGAAAAAGAA GCCATGAGGA TACT TCCTCTAGGC TTTACCGTTTCGTTC spoVD 1827273 - 1825399 - | Stage V sporulation protein D (penicillin-binding protein) TERM 2813 1825569 - 1825595 + g 73 -3.6 -4.92828 | opp_overlap 1825576, overlap 1825572 TTAAATTTGGCACTT CCACATAGCGTG GGT CAAGCCATGTCG TTTCTTTTTCAATTT TERM 2814 1825614 - 1825646 + g 84 -11.4 -3.11584 | gap 1, overlap 1825613 1825611 CTTTTTCAATTTGCT GTTTGCGCG-GTTTG ACAC CGAGCGCGCGCAAAC TATCTTCCATAATGT pbpB 1829552 - 1827381 - | Cell division protein FtsI/penicillin-binding protein 2 TERM 2815 1827461 - 1827477 + g 78 -5.1 -4.9448 | ATGGCTTTGCAAGTT CGACAAT GAT ATAGTCG TTTTGTTTGATCACT TERM 2816 1829169 - 1829190 + g 85 -2.3 -5.76949 | gap 1, overlap 1829171 GCCGCGACCGTTCGG GCCGAACTCA ACT TGA-TTCGCC TTTTTTTTCAAAATG ftsL 1829921 - 1829559 - | Protein required for the initiation of cell division TERM 2817 1829882 - 1829894 + g 75 -3.4 -5.10461 | CGTGTTGTTCTTGTT GTAC TTGTT GTAC TTTTTGTTGAATGCG Aflv_1838 1830878 - 1829937 - | Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis TERM 2818 1831000 - 1830984 - R 100 -6.6 -6.02914 | opp_overlap 1830984 TGTACATAAAAAAAA TCCTGT ACGCG ACAGGA TTTTTTTATCGACGA TERM 2819 1830984 - 1831000 + r 100 -6.6 -5.60993 | opp_overlap 1830984 TGTACATAAAAAAAA TCCTGT ACGCG ACAGGA TTTTTTTATCGACGA Aflv_1839 1832632 - 1831022 - | hypothetical protein TERM 2820 1832489 - 1832504 + g 71 -8.2 -3.52896 | opp_overlap 1832482 GTGAACGAGCGCATC GCGGGC ATAC GTCCGC TTGTGTAACTCGTGC Aflv_1840 1833047 - 1832652 - | Uncharacterized membrane protein TERM 2821 1832863 - 1832841 - G 76 -9.3 -3.4727 | overlap 1832837 CAAAAAAATGAGCAA TTCAACGAT ATACG ATCGTTGAA AAACGGCTTGCAATA Aflv_1841 1833937 - 1833044 - | Ketopantoate reductase TERM 2822 1833381 - 1833403 + g 86 -7.8 -4.74504 | opp_overlap 1833385 AGAGCGGTAAGTGGA TTAATGGCGA CGT TCACCATTAA TTTTTCAATTAACAT TERM 2823 1833477 - 1833487 + g 81 -4 -5.40072 | opp_overlap 1833472 1833477 GTCGTATATAGAAAA GAAA ACG TTTC TTTTTTTCCGCGCCA TERM 2824 1834006 - 1833985 - R 100 -5.9 -5.94713 | ATTGTATAAAAAAAA GTAGCTG GCGTCTAT CAGCTAC TACACAGACAATTGA Aflv_1842 1834452 - 1834006 - | hypothetical protein TERM 2825 1834160 - 1834172 + g 72 -7.7 -3.85698 | TGTTGCCCTTCCCCG CGTTG TTG CAACG TTTGTAAAAAAGAGA Aflv_1843 1835346 - 1834513 - | Enoyl-CoA hydratase TERM 2826 1835329 - 1835375 + g 100 -14.7 -3.58731 | opp_overlap 1835333 1835336 1835341, overlap 1835333 GCGTTTTTTTCCTTC TAAATAAGAAAAGCGCAAGGG AGTGG CCCTTACGCTTCTCTTATTTG TTTACAACGTCTTTT TERM 2827 1835371 - 1835333 - G 100 -17.7 -3.53012 | opp_overlap 1835329 1835333, overlap 1835336 1835341 TTTTTTCCTTCTAAA TAAGAAAAGCGCAAGGG AGTGG CCCTTACGCTTCTCTTA TTTGTTTACAACGTC TERM 2828 1835333 - 1835371 + g 100 -13.3 -4.42062 | opp_overlap 1835333 1835336 1835341, overlap 1835329 TTTTTTCCTTCTAAA TAAGAAAAGCGCAAGGG AGTGG CCCTTACGCTTCTCTTA TTTGTTTACAACGTC TERM 2829 1835368 - 1835336 - G 100 -15 -3.90744 | opp_overlap 1835333 1835329, overlap 1835333 1835341 TTTCCTTCTAAATAA GAAAAGCGCAAGGG AGTGG CCCTTACGCTTCTC TTATTTGTTTACAAC TERM 2830 1835363 - 1835341 - G 100 -11.3 -5.00196 | opp_overlap 1835333 1835329, overlap 1835336 1835333 TTCTAAATAAGAAAA GCGCAAGGG AGTGG CCCTTACGC TTCTCTTATTTGTTT rpmF 1835551 - 1835369 - | Ribosomal protein L32 Aflv_1845 1836121 - 1835606 - | Predicted metal-binding, possibly nucleic acid-binding protein TERM 2831 1836362 - 1836345 - g 93 -2.7 -6.04378 | gap 1, overlap 1836346 1836349 AAACGAGAAAAAAAA CGAGCGCA GAT TGCG-TCA TCGCCGTCATGAGTA TERM 2832 1836610 - 1836600 - g 82 -6.8 -4.84017 | opp_overlap 1836599, overlap 1836587 AACCGTTTATAAAAA CAGC TCA GCTG CTCGTTTATAAAAAA TERM 2833 1836872 - 1836889 + G 73 -5.5 -4.62872 | opp_overlap 1836862, overlap 1836870 1836867 GATAACATTGCGAGC GCAACGA GCAT TCGTCGC TTTTTACAGGTTAGT Aflv_1846 1836263 - 1837468 + | Predicted nucleotidyltransferase Aflv_1847 1838473 - 1837460 - | Predicted secreted protein containing a PDZ domain TERM 2834 1838425 - 1838412 - G 78 -2.3 -5.53288 | overlap 1838413 GGCAAGTGAAAAAAA GTCGC AAAA GCGAG TAGTAGTGCAACGAT Aflv_1848 1839291 - 1838470 - | Predicted esterase of the alpha-beta hydrolase superfamily TERM 2835 1839897 - 1839884 - g 70 -3.9 -4.85782 | CGGTTCAAAAACAAA CAAAA AGCC TTTTG CGCCAGGCGTTTCGC Aflv_1849 1839442 - 1840551 + | hypothetical protein TERM 2836 1840540 - 1840557 + T 76 -7 -4.42386 | opp_overlap 1840540 TTCCGACGTGAAAAA CCACCT GTTTAA AGGTGG TTTTCTGCATGAGCA TERM 2837 1840557 - 1840540 - T 79 -7 -4.62069 | opp_overlap 1840540 TTCCGACGTGAAAAA CCACCT GTTTAA AGGTGG TTTTCTGCATGAGCA Aflv_1850 1841045 - 1840548 - | Phosphopantetheine adenylyltransferase TERM 2838 1840772 - 1840802 + g 100 -11.3 -4.20806 | gap 2, opp_overlap 1840772 1840771 1840769 1840774, overlap 1840793 CAAAATCGGAAACAG CACGCAAGCCGCGCA AAA TG-GC-GCTTGCGTG TTTGCTTTTCGCATA TERM 2839 1840802 - 1840772 - G 80 -11.3 -2.66941 | gap 2, opp_overlap 1840772 1840793, overlap 1840771 1840769 1840774 CAAAATCGGAAACAG CACGCAAGCCGCGCA AAA TG-GC-GCTTGCGTG TTTGCTTTTCGCATA Aflv_1851 1841614 - 1841048 - | N6-adenine-specific methylase TERM 2840 1841843 - 1841866 + r 77 -8 -4.25111 | opp_overlap 1841837 1841840 1841844, overlap 1841844 1841856 AAAAGAATGGAAGGG ACCCTGCGGC ATAT GCCACAGGGC ATTTTTTTATTTTAT TERM 2841 1841844 - 1841865 + r 82 -11.5 -3.11406 | opp_overlap 1841837 1841840 1841844, overlap 1841843 1841856 AAAGAATGGAAGGGA CCCTGCGGC ATAT GCCACAGGG CATTTTTTTATTTTA TERM 2842 1841865 - 1841844 - R 91 -13.7 -2.59101 | opp_overlap 1841844 1841843 1841856, overlap 1841837 1841840 AAAGAATGGAAGGGA CCCTGCGGC ATAT GCCACAGGG CATTTTTTTATTTTA TERM 2843 1841856 - 1841867 + r 100 -5.8 -6.17669 | opp_overlap 1841844 1841840, overlap 1841844 1841843 GGACCCTGCGGCATA TGCC ACAG GGCA TTTTTTTATTTTATT Aflv_1852 1843221 - 1841878 - | hypothetical protein Aflv_1853 1843344 - 1843739 + | hypothetical protein TERM 2844 1843779 - 1843745 - T 70 -3.6 -4.9645 | opp_overlap 1843752, overlap 1843747 1843752 ACTACAATAAGAAAA GCGAAAAGGATGTCAA CCG CTGACATCCTTTTTTA TATGCCGTATTCGTA TERM 2845 1843777 - 1843747 - T 76 -10.6 -2.72662 | opp_overlap 1843752, overlap 1843745 1843752 TACAATAAGAAAAGC GAAAAGGATGTCAA CCG CTGACATCCTTTTT TATATGCCGTATTCG TERM 2846 1843752 - 1843772 + T 100 -9.8 -5.37043 | opp_overlap 1843752 1843747 1843745 TAAGAAAAGCGAAAA GGATGTCA ACCGC TGACATCC TTTTTTATATGCCGT TERM 2847 1843772 - 1843752 - T 90 -10.5 -4.4836 | opp_overlap 1843752, overlap 1843747 1843745 TAAGAAAAGCGAAAA GGATGTCAA CCG CTGACATCC TTTTTTATATGCCGT Aflv_1854 1844085 - 1843777 - | hypothetical protein Aflv_1855 1844558 - 1844064 - | Regulatory protein involved in competence development and sporulation TERM 2848 1844587 - 1844565 - R 93 -10.7 -4.87892 | opp_overlap 1844568 CGCCAACAAAACAAA TAAGTCTGG TTGCC CCAGACTTA TGAAATCGTCACCGT Aflv_1856 1844953 - 1844585 - | hypothetical protein TERM 2849 1844848 - 1844860 + g 70 -2.7 -5.06414 | TGACGAGATGTTTCA CAAAT AAC GTTTG TTTTTGTTCAGCAAA TERM 2850 1844984 - 1844936 - G 100 -4.7 -6.08563 | gap 1, opp_overlap 1844936 1844940 AATACATAAAAAAAA GAAGCGCAA-CACTTTCACCGT CCTTTC ATAGTGATAGTGTTTGCGTTTC TCGCTTAATTATGAG Aflv_1857 1845234 - 1844989 - | hypothetical protein Aflv_1858 1845572 - 1845243 - | hypothetical protein Aflv_1859 1846648 - 1845638 - | Uncharacterized secreted protein with SCP domain TERM 2851 1846745 - 1846717 - R 89 -6.8 -5.27779 | opp_overlap 1846720 1846743, overlap 1846721 TGCAACACTAAAAAA TAAAGGCTATGC AAAAA ACATAGCCCTCA TTCGTTAATGATATT TERM 2852 1846741 - 1846721 - R 86 -7.6 -5.10526 | opp_overlap 1846720, overlap 1846717 ACACTAAAAAATAAA GGCTATGC AAAAA ACATAGCC CTCATTCGTTAATGA Aflv_1860 1847172 - 1846750 - | CBS domain protein Aflv_1861 1847298 - 1847657 + | hypothetical protein TERM 2853 1847670 - 1847651 - f 95 -12.2 -4.32857 | opp_overlap 1847651 TCTTGCAAACATAAA CGCATGAG CGCG CTCATGCG TTTTTTCCGTCAACG TERM 2854 1847651 - 1847670 + F 100 -12.2 -5.08824 | opp_overlap 1847651 TCTTGCAAACATAAA CGCATGAG CGCG CTCATGCG TTTTTTCCGTCAACG TERM 2855 1848519 - 1848529 + G 71 -2.4 -5.12707 | opp_overlap 1848521, overlap 1848526 TGACTTACCGAAAAT ACGC GAA GCGA TTTTTTCGCATTTAA TERM 2856 1848755 - 1848769 + G 70 -5.6 -4.27796 | GTTCGATCATTGTTA TGGCAC CTT GGGCCA TTTTCCACTTTGTTA Aflv_1862 1847911 - 1849029 + | Predicted permease TERM 2857 1849032 - 1849051 + T 95 -12.2 -4.57569 | opp_overlap 1849032 CTTTAAATTGTAAAA GAGGGTGA ACTG TCACCCTC TTTTTAAAACCCTAA TERM 2858 1849051 - 1849032 - T 95 -12.2 -4.24002 | opp_overlap 1849032 CTTTAAATTGTAAAA GAGGGTGA ACTG TCACCCTC TTTTTAAAACCCTAA Aflv_1863 1849519 - 1849055 - | Predicted membrane protein TERM 2859 1849149 - 1849129 - G 74 -4.6 -4.79953 | overlap 1849131 ATAACAACAAATAAA CGGCAACG CCTGT CGTCGCGG TGAAAAACCAAACGA TERM 2860 1849391 - 1849370 - G 70 -3.5 -4.84363 | opp_overlap 1849383, overlap 1849372 1849383 GTAAATGATGAAAAA GCCGAGCGC AAAA GCGGCCGCC AGCCACATCGTTTTT ctaG 1850416 - 1849541 - | Predicted membrane protein TERM 2861 1850493 - 1850472 - R 100 -13.1 -5.10163 | opp_overlap 1850472 1850475 AACGTGAAAAGAAAA GAAGCTAGC CAAT GCTAGCTTC TTAAATCCAGACGAC TERM 2862 1850472 - 1850493 + r 91 -13.1 -3.05384 | opp_overlap 1850472, overlap 1850475 AACGTGAAAAGAAAA GAAGCTAGC CAAT GCTAGCTTC TTAAATCCAGACGAC TERM 2863 1850475 - 1850490 + r 76 -9 -3.67597 | opp_overlap 1850472, overlap 1850472 GTGAAAAGAAAAGAA GCTAGC CAAT GCTAGC TTCTTAAATCCAGAC ctaF 1850826 - 1850494 - | Cytochrome caa3 oxidase (subunit IV) ctaE 1851451 - 1850831 - | Cytochrome caa3 oxidase (subunit III) ctaD 1853319 - 1851451 - | Cytochrome caa3 oxidase (subunit I) TERM 2864 1853082 - 1853070 - G 75 -10.5 -2.85297 | overlap 1853067 1853065 TCATCGCAAACACGA GCGGC ATC GCCGC AAGGAAAATCATCGT ctaC 1854413 - 1853349 - | Cytochrome caa3 oxidase (subunit II) TERM 2865 1854008 - 1854035 + g 87 -4.8 -5.5112 | gap 1, opp_overlap 1854000, overlap 1854004 1854011 AGTACAAGTTCGCGC GAACGTTGACGAC AAC GACGTCA-CGCTC TTTTTTGTTCATCGG TERM 2866 1854492 - 1854460 - R 70 -8.8 -3.32895 | gap 1, opp_overlap 1854464, overlap 1854458 1854464 ATAAAGTGAAATATA TACA-TTCTTTCTTT ACAA AAAGAAAGAATTGTA AACCCGTTTGTTTCA TERM 2867 1854487 - 1854464 - R 73 -9.8 -3.15659 | opp_overlap 1854464, overlap 1854460 1854458 AGTGAAATATATACA TTCTTTCTTT ACAA AAAGAAAGAA TTGTAAACCCGTTTG TERM 2868 1854464 - 1854487 + r 75 -9.8 -3.30635 | opp_overlap 1854464 1854460 1854458 AGTGAAATATATACA TTCTTTCTTT ACAA AAAGAAAGAA TTGTAAACCCGTTTG TERM 2869 1854563 - 1854540 - R 75 -9.8 -3.40073 | overlap 1854549 1854555 ACGCTCATCAATCAA TTGTAACAAT AACC ATTGTTACAA ACAAAATTGTCAAAT ctaB 1855437 - 1854532 - | Heme O synthase (polyprenyltransferase) TERM 2870 1856094 - 1856104 + G 71 -3.2 -4.98911 | AAACGAAGTTTTTGG CGAT CGT GTCG TTTGTTTTTCTCGTC ctaA 1855808 - 1856758 + | Heme A synthase (monooxygenase) TERM 2871 1856756 - 1856786 + T 100 -15.7 -4.64598 | opp_overlap 1856756 1856761, overlap 1856761 TCTGCCGTATTAAAA TAAAAGAACGAGG AAATC CCTCGTTCTTTTA TTTTTCCGCTAATTC TERM 2872 1856786 - 1856756 - T 100 -16.4 -4.25104 | opp_overlap 1856756 1856761, overlap 1856761 TCTGCCGTATTAAAA TAAAAGAACGAGGA AAT CCCTCGTTCTTTTA TTTTTCCGCTAATTC TERM 2873 1856761 - 1856781 + T 100 -11.2 -5.27023 | opp_overlap 1856761 1856756, overlap 1856756 CGTATTAAAATAAAA GAACGAGG AAATC CCTCGTTC TTTTATTTTTCCGCT TERM 2874 1856781 - 1856761 - T 100 -11.9 -5.13722 | opp_overlap 1856756 1856761, overlap 1856756 CGTATTAAAATAAAA GAACGAGGA AAT CCCTCGTTC TTTTATTTTTCCGCT pycA 1860224 - 1856784 - | Pyruvate carboxylase TERM 2875 1856907 - 1856927 + g 89 -6.9 -5.30575 | CATTTTCATCGCTTC GGTAATCAT TAA ATGATCACC TTTTTTCACTTTTTC TERM 2876 1859979 - 1859967 - G 74 -4.8 -4.82901 | GTTTTCCGATAAAAA TCCG TATCC CGGA TGAATCGCGTCAACA TERM 2877 1860141 - 1860128 - G 71 -6.7 -4.15044 | CTTCGCGCGAATAAA TCGCA ACGG TGCGA ATGCCGAGCTCGTTG ftsW 1861493 - 1860288 - | Bacterial cell division membrane protein TERM 2878 1860810 - 1860824 + g 73 -5.6 -4.45517 | opp_overlap 1860803, overlap 1860812 TAGAAAACCGTCGAT GCGCGA TAA TCGCTC TTTTGTAAATACTTT TERM 2879 1860917 - 1860903 - G 81 -4.3 -5.30348 | ACTGAACAATAAAAA CTGTT TCATT AACAG CCGTTTGCTTGCCGC TERM 2880 1861311 - 1861301 - G 95 -4.6 -5.8187 | overlap 1861302 CAGTCAATAAAAAAA CGGC GAC ACCG ATCACCCACGCCCAT TERM 2881 1861533 - 1861570 + r 100 -6.5 -5.80727 | gap 1, opp_overlap 1861534 1861541, overlap 1861534 1861541 ATTGTACTACAAAAC AGA-AAAAACCCAAACGA AAT TCGTTTGAGTTTTTGTCA TTTTTTCTTCTTTTT TERM 2882 1861569 - 1861534 - R 91 -12.2 -3.84183 | gap 1, opp_overlap 1861533 1861534 1861541, overlap 1861541 TTGTACTACAAAACA GA-AAAAACCCAAACGA AAT TCGTTTGAGTTTTTGTC ATTTTTTCTTCTTTT TERM 2883 1861534 - 1861569 + r 86 -10 -4.02946 | gap 1, opp_overlap 1861534 1861541, overlap 1861533 1861541 TTGTACTACAAAACA GA-AAAAACCCAAACGA AAT TCGTTTGAGTTTTTGTC ATTTTTTCTTCTTTT TERM 2884 1861561 - 1861541 - R 100 -10.5 -5.65678 | opp_overlap 1861534 1861533 1861541, overlap 1861534 ACAAAACAGAAAAAA CCCAAACGA AAT TCGTTTGAG TTTTTGTCATTTTTT TERM 2885 1861541 - 1861561 + r 90 -8.3 -5.14894 | opp_overlap 1861541 1861534, overlap 1861534 1861533 ACAAAACAGAAAAAA CCCAAACGA AAT TCGTTTGAG TTTTTGTCATTTTTT Aflv_1873 1861858 - 1861568 - | hypothetical protein TERM 2886 1862011 - 1862000 - g 71 -3 -5.07486 | TAGGGGGAATAAAAA TGAT CATG ATCA TCAAAGGGAACGTGA Aflv_1874 1861999 - 1862493 + | hypothetical protein TERM 2887 1862492 - 1862516 + T 100 -17.3 -3.30124 | opp_overlap 1862497, overlap 1862497 CGTTTATCGTCGAGT GAAAAGAGGCG CTT CGCCTCTTTTC TTATAAAAGATCGGC TERM 2888 1862497 - 1862511 + T 95 -11.4 -4.77165 | opp_overlap 1862497, overlap 1862492 ATCGTCGAGTGAAAA GAGGCG CTT CGCCTC TTTTCTTATAAAAGA TERM 2889 1862511 - 1862497 - T 93 -11.4 -4.18197 | opp_overlap 1862492 1862497 ATCGTCGAGTGAAAA GAGGCG CTT CGCCTC TTTTCTTATAAAAGA ylaK 1863848 - 1862517 - | Predicted RNA modification enzyme (contains PIN and ATPase domains) Aflv_1876 1863958 - 1864542 + | hypothetical protein TERM 2890 1864537 - 1864567 + T 85 -9 -4.25658 | opp_overlap 1864540 1864543, overlap 1864533 1864538 1864540 1864543 TCAAACGACCATATG AAATAAGCCGAGCG TAT TGCTCGGCTTATGC TTGTTTTAATGCGCT TERM 2891 1864538 - 1864566 + T 85 -12.5 -3.14672 | opp_overlap 1864540 1864543, overlap 1864537 1864533 1864540 1864543 CAAACGACCATATGA AATAAGCCGAGCG TAT TGCTCGGCTTATG CTTGTTTTAATGCGC TERM 2892 1864564 - 1864540 - T 100 -14.4 -3.87318 | opp_overlap 1864540 1864538 1864537 1864533 1864543, overlap 1864543 AACGACCATATGAAA TAAGCCGAGC GTATT GCTCGGCTTA TGCTTGTTTTAATGC TERM 2893 1864540 - 1864564 + T 100 -15.1 -3.12766 | opp_overlap 1864540 1864543, overlap 1864538 1864537 1864533 1864543 AACGACCATATGAAA TAAGCCGAGCG TAT TGCTCGGCTTA TGCTTGTTTTAATGC TERM 2894 1864543 - 1864561 + T 90 -12.4 -3.68416 | opp_overlap 1864540 1864543, overlap 1864540 1864538 1864537 1864533 GACCATATGAAATAA GCCGAGCG TAT TGCTCGGC TTATGCTTGTTTTAA TERM 2895 1864561 - 1864543 - T 91 -11.7 -4.05877 | opp_overlap 1864543 1864540 1864538 1864537 1864533, overlap 1864540 GACCATATGAAATAA GCCGAGC GTATT GCTCGGC TTATGCTTGTTTTAA Aflv_1877 1865017 - 1864562 - | hypothetical protein Aflv_1878 1865111 - 1865311 + | hypothetical protein TERM 2896 1865340 - 1865317 - T 81 -6.6 -4.68705 | gap 1, opp_overlap 1865317 AGAATGGTAAGAAAA GCGCCCTGCAC GAA GCGT-GGGCGC TTATTGGTAATTGAC TERM 2897 1865317 - 1865340 + T 70 -8.1 -3.77722 | gap 1, opp_overlap 1865317 AGAATGGTAAGAAAA GCGCCC-TGC ACGAA GCGTGGGCGC TTATTGGTAATTGAC Aflv_1879 1865622 - 1865341 - | hypothetical protein Aflv_1880 1865921 - 1865619 - | hypothetical protein bipA 1867697 - 1865934 - | Translation regulatory factor BipA (a GTPase) TERM 2898 1867703 - 1867714 + r 75 -5.8 -4.68593 | GGCGAAGCAATTGGT CGAC TAAC GTCG TTTTTCCGTGGTCAA TERM 2899 1867969 - 1867993 + r 86 -7.1 -5.06451 | overlap 1867962 1867980 TTATCGACATGTGCC GGCGATCGTCG GCT CGATCATTGCC TTTTTTGGCGTGATG TERM 2900 1868040 - 1868063 + r 73 -9.6 -3.21218 | opp_overlap 1868040 TAAAAAAAAGAAAAA GCGCTAACGA GCGA TAGTTAGCGC TTGATCATCGCAAGT TERM 2901 1868063 - 1868040 - R 100 -9.6 -5.94743 | opp_overlap 1868040 TAAAAAAAAGAAAAA GCGCTAACGA GCGA TAGTTAGCGC TTGATCATCGCAAGT Aflv_1882 1868839 - 1868057 - | Inositol-1-monophosphatase (IMPase) TERM 2902 1868219 - 1868241 + g 74 -10.6 -2.73124 | opp_overlap 1868219 1868234, overlap 1868218 ATCCCATGGCGACAA TCGAAGCGTA ATG TACGCATCGA GTTTCCCAGATGCGA TERM 2903 1868241 - 1868219 - G 78 -10.6 -3.31263 | opp_overlap 1868219 1868218, overlap 1868234 ATCCCATGGCGACAA TCGAAGCGTA ATG TACGCATCGA GTTTCCCAGATGCGA TERM 2904 1868289 - 1868305 + g 73 -3.5 -5.00616 | opp_overlap 1868292, overlap 1868291 1868292 GCCGCAGAACCGTAT GAACGCG TAC CGCGCGC TTTTTTCACAAGCGG TERM 2905 1868872 - 1868887 + r 89 -11.8 -3.75153 | opp_overlap 1868872 TATTTATGTAGAAAA GGCGGC GTTT GCCGCC TTTCAGTTCGACAGA TERM 2906 1868887 - 1868872 - R 95 -11.8 -4.431 | opp_overlap 1868872 TATTTATGTAGAAAA GGCGGC GTTT GCCGCC TTTCAGTTCGACAGA Aflv_1883 1869078 - 1868890 - | hypothetical protein TERM 2907 1869182 - 1869196 + r 75 -2.8 -5.18561 | CACAATCTCTCCGTT GGACAA CTC TTTTCC TTTTTTAACTGTTTG Aflv_1884 1869472 - 1869158 - | hypothetical protein TERM 2908 1869212 - 1869232 + g 73 -5.4 -4.67904 | TTTTTTAACTGTTTG GTAAGAGG AATAG CCACTTAC TTTTTCAAATTCATC Aflv_1885 1870419 - 1869460 - | Dioxygenase TERM 2909 1871376 - 1871390 + G 70 -5.6 -4.27694 | opp_overlap 1871378, overlap 1871375 1871372 TTTAAGTATGTTAAC GACGAC ATC GACGTC TTATTTGTTGCTTGC speA 1870606 - 1872072 + | Arginine decarboxylase TERM 2910 1872115 - 1872063 - T 95 -13 -3.59252 | opp_overlap 1872078, overlap 1872078 CGTCATTAAAGAACA TCAAAAATGAAAAAAGCGGAGCTC ACGTG GAGTTCCGCTTTTTTCATTAATAA AAAGAGACCGGCTAT TERM 2911 1872100 - 1872078 - T 100 -9.1 -5.54079 | opp_overlap 1872078, overlap 1872063 TCAAAAATGAAAAAA GCGGAGCTC ACGTG GAGTTCCGC TTTTTTCATTAATAA TERM 2912 1872078 - 1872100 + T 100 -11.3 -5.30155 | opp_overlap 1872063 1872078 TCAAAAATGAAAAAA GCGGAGCTC ACGTG GAGTTCCGC TTTTTTCATTAATAA TERM 2913 1872139 - 1872119 - T 93 -11.1 -5.1356 | opp_overlap 1872119 TTTCATTAATAAAAA GAGACCGGC TAT GCCGATCCC TTCCCTCTATATATG Aflv_1887 1872413 - 1872192 - | Uncharacterized conserved protein, contains two CXXC motifs TERM 2914 1872437 - 1872419 - R 100 -7.4 -5.96894 | opp_overlap 1872419 ATTTAAACAAAAAAA GAGACGTA ATT CACGCCTC TTACTCGTATTGTTC Aflv_1888 1872797 - 1872438 - | hypothetical protein TERM 2915 1872972 - 1872953 - g 70 -7.9 -3.62522 | overlap 1872941 CAACTGCTCGAACAA TTTCGCG ACATCG CGCGAAA AACGGGCGAACAGCT TERM 2916 1873001 - 1873011 + G 79 -8.2 -4.23758 | CTCGCTTGGGACTAC GCGG AAT CCGC TTTTCCGTATGACAT Aflv_1889 1872866 - 1873246 + | hypothetical protein Aflv_1890 1873542 - 1873234 - | hypothetical protein TERM 2917 1873410 - 1873394 - G 75 -2.2 -5.26119 | opp_overlap 1873395, overlap 1873395 GCTTTAAAAATAAAA TGATCG TGGGC CGATCT CCATTCAACGAGTGA TERM 2918 1873556 - 1873515 - G 82 -4.5 -5.27477 | gap 1, opp_overlap 1873521 1873526, overlap 1873526 ATCGTAAGGAAAAAA TCATGAAAAAAGAGGACGGC GAA GCCATCCTCTTTTATT-TGT TAATAATATGAATTG TERM 2919 1873521 - 1873551 + g 100 -11.2 -4.28111 | opp_overlap 1873515 1873526, overlap 1873526 AGGAAAAAATCATGA AAAAAGAGGACGGC GAA GCCATCCTCTTTTA TTTGTTAATAATATG TERM 2920 1873526 - 1873546 + g 100 -11.1 -5.12172 | opp_overlap 1873515 1873526, overlap 1873521 AAAATCATGAAAAAA GAGGACGGC GAA GCCATCCTC TTTTATTTGTTAATA TERM 2921 1873546 - 1873526 - G 100 -13.3 -5.25656 | opp_overlap 1873526 1873521, overlap 1873515 AAAATCATGAAAAAA GAGGACGGC GAA GCCATCCTC TTTTATTTGTTAATA pdhD 1874961 - 1873549 - | Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component pdhC 1876270 - 1874966 - | Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component TERM 2922 1874995 - 1875007 + g 77 -6.3 -4.6468 | overlap 1875002 ATAATAATTCAGGAT CGTTT AAT AAACG TTTTATGTGATTTAA TERM 2923 1875295 - 1875326 + g 74 -9.5 -3.34398 | overlap 1875293 GCTCGTTAATTTCTT TGGCGATCGCAAA AATCGA TTTGCGGTCGGCA TGTTTCACAACCGGA TERM 2924 1875890 - 1875901 + g 90 -7.2 -5.15969 | opp_overlap 1875884, overlap 1875884 GCGCACAGACGGCAT CGCG ATGA CGCG TTTTTTCGGTTGCGC pdhB 1877287 - 1876310 - | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit pdhA 1878406 - 1877291 - | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit TERM 2925 1877434 - 1877453 + g 73 -3.5 -5.00467 | CTTTAATGTCTTCTT TCGCTTG TTCGAT CACGCGA TTTTCTTCTTCTTCG TERM 2926 1878348 - 1878365 + g 77 -6.3 -4.62336 | GTCGGGAACTGCTCA GCGACTT TTTC AAGTTGC TTTTTCACATCAAAT Aflv_1895 1878783 - 1879337 + | N-formylmethionyl-tRNA deformylase TERM 2927 1879345 - 1879364 + T 81 -5.7 -5.07652 | gap 1, opp_overlap 1879345, overlap 1879340 AACGGTAATGAAAAA GGGCTACC ATGAC GGT-GCCC TTTTATTTTAACAAG TERM 2928 1879364 - 1879345 - T 82 -6.4 -4.87893 | gap 1, opp_overlap 1879345 1879340 AACGGTAATGAAAAA GGGCTACCA TGA CGGT-GCCC TTTTATTTTAACAAG Aflv_1896 1880143 - 1879367 - | Predicted hydrolase of the HAD superfamily Aflv_1897 1880334 - 1880405 + | hypothetical protein TERM 2929 1880412 - 1880434 + F 87 -8.5 -4.49716 | gap 1, overlap 1880414 1880425 ATTGCATAGTTGTAC GA-GCCCTTC AATC GAAGGGCTTC TTTTCAATTTTGTTT TERM 2930 1880414 - 1880431 + F 93 -11.3 -4.31549 | overlap 1880412 1880425 TGCATAGTTGTACGA GCCCTTC AATC GAAGGGC TTCTTTTCAATTTTG Aflv_1898 1880585 - 1880800 + | Uncharacterized conserved small protein Aflv_1899 1880797 - 1882464 + | mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) TERM 2931 1882470 - 1882493 + F 93 -11 -5.07053 | opp_overlap 1882470 GGAAGTGTAAAAAAA GAAGGTGCCC GTTT GGACACCTTC TTTTTTAACGTAATT TERM 2932 1882493 - 1882470 - f 100 -13.2 -5.47399 | opp_overlap 1882470 GGAAGTGTAAAAAAA GAAGGTGCCC GTTT GGACACCTTC TTTTTTAACGTAATT TERM 2933 1882623 - 1882592 - f 82 -3.7 -5.36441 | opp_overlap 1882597 1882619 TTGCGAGAGAAAAAA CAAGTTCGTGCTT TGGTAT AATCACGATCCTG TCGAATGTGTTCATT TERM 2934 1882881 - 1882863 - g 100 -10.3 -5.03747 | opp_overlap 1882863 AAACTTGTCAAAAAA GAAGCGG GGTAT CCGCTTC TTTTTTTAGATTGGG TERM 2935 1882863 - 1882881 + G 100 -11 -5.53288 | opp_overlap 1882863 AAACTTGTCAAAAAA GAAGCGGG GTA TCCGCTTC TTTTTTTAGATTGGG Aflv_1900 1882835 - 1883419 + | hypothetical protein TERM 2936 1883442 - 1883465 + T 100 -11 -5.22006 | opp_overlap 1883445 CTCGATCTTTTTTAA GAAGGTGCCC GTTT GGACACCTTC TTTTTATTCTCCTAC TERM 2937 1883462 - 1883445 - T 76 -9.1 -3.61715 | opp_overlap 1883442 GATCTTTTTTAAGAA GGTGCCC GTTT GGACACC TTCTTTTTATTCTCC Aflv_1901 1884134 - 1883469 - | K+ transport system, NAD-binding component Aflv_1902 1884592 - 1884134 - | Thioredoxin domain protein TERM 2938 1884171 - 1884181 + g 75 -5.4 -4.87273 | TATTCATCAATGACG CGAA TGA TTCG TTTTTCTAACATATT Aflv_1903 1885764 - 1884589 - | Metal-dependent amidase/aminoacylase/carboxypeptidase TERM 2939 1885766 - 1885748 - G 100 -10.3 -5.00616 | opp_overlap 1885748 CTCCTTTTGAAAAAA GCGTGGA ATCGA TCCACGC TTTATAGTTGACGAA TERM 2940 1885748 - 1885766 + g 89 -10.3 -4.05446 | opp_overlap 1885748 CTCCTTTTGAAAAAA GCGTGGA ATCGA TCCACGC TTTATAGTTGACGAA Aflv_1904 1886475 - 1885768 - | Tetrahydrodipicolinate N-succinyltransferase Aflv_1905 1886996 - 1886538 - | CBS domain protein TERM 2941 1887056 - 1887036 - R 93 -7.6 -5.49809 | opp_overlap 1887036 GAAAGCGCAAAAAAA GCCTTCAC AGTAG GTGAAGAC TTAATTCAACAAATC Aflv_1906 1887320 - 1887057 - | hypothetical protein TERM 2942 1887152 - 1887163 + g 78 -4.4 -5.20216 | opp_overlap 1887152 CGTACACTTCTAATA CGAA CGTG TTCG TTTTTTCGTAATATG TERM 2943 1887375 - 1887400 + r 74 -8.9 -3.53091 | opp_overlap 1887375 AAAAGTAAACAAAAA CGAAAGCCCAC CATA GCGGGCTTACG TTTGAAGCGCGACGT TERM 2944 1887400 - 1887375 - R 100 -11.1 -5.43974 | opp_overlap 1887375 AAAAGTAAACAAAAA CGAAAGCCCAC CATA GCGGGCTTACG TTTGAAGCGCGACGT Aflv_1907 1887632 - 1887396 - | hypothetical protein Aflv_1908 1888880 - 1887672 - | C-di-GMP-specific phosphodiesterase TERM 2945 1888491 - 1888529 + g 71 -8.3 -3.56704 | overlap 1888519 1888520 CCCAAGCTGTTGAAT GTCGCCTTTGAAATGAT GTTCG GTTATTTCAAGGACGAC TTGGTTTAATCGCAA TERM 2946 1888978 - 1888959 - R 91 -7.8 -5.34857 | opp_overlap 1888959 GGAAACAAAAGAAAA GCGACGCC AATA AACGTCGC TTTAAAACGGATGTT Aflv_1909 1889735 - 1888980 - | Dehydrogenase TERM 2947 1889080 - 1889067 - G 71 -3.1 -5.05505 | gap 1, opp_overlap 1889068, overlap 1889068 1889070 1889071 ATCAGAAAGTAAAAA CGAGGC GAC GCCT-G CAATTTCTTCTGGCG TERM 2948 1889754 - 1889771 + H 83 -4.9 -5.2291 | CTCATCCCCTTTTTA TGAATGG TTAT TCATTCA TTTTTATTGTACTAT Aflv_1910 1889849 - 1890730 + | Predicted phosphohydrolase TERM 2949 1890742 - 1890719 - T 75 -8.2 -4.13767 | gap 1 TTGTTTACGTTAAAA GCCGGA-TCAT AAC ATGAACCCGGC TTGAAATAAACATAT Aflv_1911 1891057 - 1890725 - | Integral membrane protein possibly involved in chromosome condensation TERM 2950 1890781 - 1890802 + g 79 -3.1 -5.26316 | opp_overlap 1890787, overlap 1890771 1890787 CCATTGAAGCGCCGA TATAAAGAA GCGC TTCTTCATA TTTTTTATGCGATAA Aflv_1912 1891440 - 1891054 - | Integral membrane protein possibly involved in chromosome condensation TERM 2951 1891401 - 1891371 - G 100 -11.8 -4.27796 | overlap 1891396 TAAGAAACGGGAAAA GAAGCGCAACGCCG TAT CGGCATAACGCTCC GAACGCTCCCCCAAT Aflv_1913 1893545 - 1891452 - | Polyphosphate kinase Aflv_1914 1895053 - 1893542 - | Exopolyphosphatase TERM 2952 1895107 - 1895093 - H 72 -3.6 -5.08015 | overlap 1895100 AATGGAAAAAATAAA TTGAAA ATT TTCCAA AAACATAAACGATCG Aflv_1915 1895166 - 1895606 + | hypothetical protein TERM 2953 1895697 - 1895673 - T 88 -9.2 -4.5954 | opp_overlap 1895673, overlap 1895668 TTATATTACACAAAA GGGCGGCCTC TTAAT GAGATCGCCC TTTTTTCTGTTGGAC TERM 2954 1895673 - 1895697 + T 95 -9.2 -5.47159 | opp_overlap 1895673 1895668 TTATATTACACAAAA GGGCGGCCTC TTAAT GAGATCGCCC TTTTTTCTGTTGGAC Aflv_1916 1897341 - 1895683 - | Multidomain signal transduction protein (contains GGDEF and EAL domains) Aflv_1917 1898508 - 1897375 - | Spore germination protein GerAC TERM 2955 1897508 - 1897520 + g 82 -7.7 -4.46581 | opp_overlap 1897508 1897507, overlap 1897500 1897498 TATATTTGTCCAAAT CCGAT CGG ATCGG TTTTGTACGCTTTTA gerAB 1899581 - 1898484 - | Spore germination protein GerAB TERM 2956 1899495 - 1899479 - GH 72 -6.5 -4.25104 | GCGCTTCGACGAAAA TGACGCG CTG CACGCCA ACGATGCCAAGCCCG Aflv_1920 1901047 - 1899581 - | Spore germination protein, GerA TERM 2957 1899611 - 1899635 + Gg 100 -11.4 -4.08692 | overlap 1899614 CTTTCGTTTCATCGC CTCCCGCCAT GAAAA ACGGCGGGAG TTTTGCGGGCGGTTC Aflv_1919 1899553 - 1899693 + | hypothetical protein TERM 2958 1900853 - 1900864 + gT 70 -5.8 -4.32491 | ACGGGCGAGCTGTTC GACG GATA CGTC TTCTTGTTTTTGAAT TERM 2959 1901140 - 1901117 - TR 100 -8.9 -5.71712 | opp_overlap 1901116 1901117 1901119, overlap 1901097 TTTTATACAAAAAAA GAGGAAGCC TTAATT GACTTCCTC GTTTAATGGGACAAA Aflv_1921 1904014 - 1901126 - | Hybrid signal transduction histidine kinase TERM 2960 1901825 - 1901813 - G 71 -9.1 -3.37354 | overlap 1901817 TACATCGACGCATAA GCGAG TGC CTCGC TCATAAATGCGCACC TERM 2961 1902850 - 1902869 + g 85 -2.1 -5.7946 | overlap 1902851 CAGATGCGGTCAGTT CCCGTTT TAACAT AAACGGC TTTTTTTGTTCAAAC TERM 2962 1902949 - 1902963 + g 74 -4.2 -5.055 | opp_overlap 1902949, overlap 1902939 1902938 CGCTTGCTGATAAAC CGAATG ACG CATGCG TTTTTTCGGCGTTCA TERM 2963 1903141 - 1903153 + g 74 -7.7 -3.93489 | CTTCAAGTGCTTGTT CAAGC TCG GCTTG TTGTATTTCTAATTC TERM 2964 1903444 - 1903472 + g 76 -10.3 -3.05343 | opp_overlap 1903441 1903442 1903439, overlap 1903441 ACAAAATGAACACCG TTTGCGCGGTCGT TTG ATGATCGCGCAAC TGTTGAAACTCTGCA cheY 1904372 - 1903998 - | CheY-like receiver domain protein Aflv_1923 1907599 - 1904372 - | hypothetical protein TERM 2965 1906297 - 1906312 + gr 76 -7.5 -4.13945 | TAATCGCTGTTTCAC CCGGG AAATGA CCCGG TTTTGCAATCCCCAT TERM 2966 1907294 - 1907305 + gr 89 -7.2 -5.04908 | opp_overlap 1907269, overlap 1907292 CGGTTCGAGCGACGT CGGC CACG GCCG TTCTTTTTTTGTTTT Aflv_1924 1908948 - 1907563 - | Glycosyltransferase, probably involved in cell wall biogenesis TERM 2967 1908624 - 1908640 + gr 71 -3.7 -4.86731 | opp_overlap 1908633 GAATGACACGCTTTA TTTCAAC AAG GTCGAAA TTTTGTTTCAACCGC Aflv_1925 1909975 - 1908941 - | HEAT repeat containing protein TERM 2968 1909262 - 1909272 + g 79 -6.8 -4.68511 | opp_overlap 1909257 1909261 1909262, overlap 1909253 1909250 1909257 CTTTAACGCACGAAT GCGA TAT TCGC TTTGTTTATGTTGAA TERM 2969 1909492 - 1909541 + g 71 -9.5 -3.04468 | gap 1, opp_overlap 1909504, overlap 1909491 1909494 1909504 ATTCGTATACGTGCG GATGGCGAAAAAGCGCAAAC-ATT TTT AATAGTTGGCGCTTTTCCATCATC GTTGTTTCCTTGGCA TERM 2970 1909529 - 1909504 - G 73 -5.5 -4.59773 | gap 1, opp_overlap 1909494 1909492 1909491 1909504 GCGGATGGCGAAAAA GCGCAAAC-ATT TTT AATAGTTGGCGC TTTTCCATCATCGTT Aflv_1926 1911588 - 1909978 - | Signal transduction diguanylate cyclase (HPT-REC-GGDEF-REC domains) TERM 2971 1911299 - 1911314 + g 75 -10.4 -2.84693 | overlap 1911298 TTTCCTTGTTCGCTA TGGGCG ACGT CGCCCA GTTGTTGCTCGTAAC TERM 2972 1911363 - 1911333 - G 71 -7 -4.15044 | gap 1, opp_overlap 1911340 1911342, overlap 1911334 1911342 GTTGCTCGTAACAAA GCTGAAAAAGCGG GCTGAG CCGCTCTTTCA-C GTCTGACGATTTCCA TERM 2973 1911355 - 1911342 - G 73 -5.2 -4.7339 | opp_overlap 1911340 1911342, overlap 1911333 1911334 AACAAAGCTGAAAAA GCGG GCTGAG CCGC TCTTTCACGTCTGAC cheV 1912510 - 1911605 - | Chemotaxis protein CheV (CheW-REC domains) TERM 2974 1912586 - 1912576 - R 70 -2.6 -5.09204 | ATAGCGTAAGAAAAA TATT TTT AATA TAAATAGTCGCTTAT Aflv_1928 1913219 - 1912581 - | Uncharacterized conserved protein, TIM beta/alpha-barrel fold protein Aflv_1929 1913364 - 1913948 + | Transcriptional regulator, TetR/AcrR family TERM 2975 1913956 - 1913937 - T 89 -9.3 -4.7173 | opp_overlap 1913941 GACTATATGCAAAAA GAAGGGG GCTAAT CCCCTTC ATACAATGGCAACGT kinB 1915291 - 1913945 - | Signal transduction histidine kinase Aflv_1931 1915381 - 1915530 + | hypothetical protein TERM 2976 1915563 - 1915541 - f 100 -6.2 -5.82172 | ATTAATATAAAAAAA GCGAAAAGCG CCC CCCATTTCGC CTAAAGGCAGCCCGC TERM 2977 1915592 - 1915570 - f 79 -11.2 -2.72144 | opp_overlap 1915586, overlap 1915569 1915573 CCATTTCGCCTAAAG GCAGCCCGCA TCC TGCGGGCAAC GGCGAAATGTCGCTG TERM 2978 1915589 - 1915573 - f 91 -13.7 -2.64155 | opp_overlap 1915586, overlap 1915570 1915569 TTTCGCCTAAAGGCA GCCCGCA TCC TGCGGGC AACGGCGAAATGTCG TERM 2979 1915730 - 1915755 + F 100 -9.9 -6.23317 | opp_overlap 1915736 ATACGTTCTTATGTC TAAAAACTGGC GTTC GCTAGTTTTTA TTTTTTTATTTTTAT Aflv_1932 1915860 - 1916099 + | hypothetical protein TERM 2980 1916169 - 1916130 - f 77 -9.6 -3.6142 | gap 2, opp_overlap 1916130, overlap 1916162 CAGAACAGCACATAA GGTGAACGTTTTCAGCAA AACACA TTGC-GAAA-CGTTCACC TTTTATTGTTTAATA TERM 2981 1916130 - 1916169 + F 93 -9.6 -5.02606 | gap 2, opp_overlap 1916130 1916162 CAGAACAGCACATAA GGTGAACGTTTTCAGCAA AACACA TTGC-GAAA-CGTTCACC TTTTATTGTTTAATA patA 1916212 - 1917363 + | Aspartate/tyrosine/aromatic aminotransferase TERM 2982 1917370 - 1917352 - T 100 -6 -5.71712 | opp_overlap 1917352 TCGTACATAAAAAAA GGTGCT CGCTAAC AGCACC TTTTTTACCACTCTT TERM 2983 1917352 - 1917370 + T 83 -6 -5.04987 | opp_overlap 1917352 TCGTACATAAAAAAA GGTGCT CGCTAAC AGCACC TTTTTTACCACTCTT Aflv_1934 1918241 - 1917375 - | 3-hydroxyisobutyrate dehydrogenase TERM 2984 1917808 - 1917795 - G 78 -2.3 -5.45726 | overlap 1917796 GATATGCGAAAAAAA GCGCA TGCA TGCGG AAAACGCTTCTTTAT fabG 1919024 - 1918257 - | 3-oxoacyl-[acyl-carrier-protein] protein reductase TERM 2985 1918749 - 1918767 + g 82 -10.2 -3.62597 | opp_overlap 1918743, overlap 1918750 CGTCACAAACGTCCC TGTCGGCG GAC CGCCGGCG TTATTGACCAATAGG TERM 2986 1918750 - 1918766 + g 81 -11.5 -2.77344 | opp_overlap 1918743, overlap 1918749 GTCACAAACGTCCCT GTCGGCG GAC CGCCGGC GTTATTGACCAATAG pleD 1920315 - 1919050 - | Response regulator with a diguanylate cyclase output domain Aflv_1937 1921571 - 1920312 - | Signal transduction histidine kinase TERM 2987 1921521 - 1921490 - G 78 -5.6 -4.75174 | overlap 1921482 1921491 1921511 1921512 TATGTAAGCGAAAAA TCGCCACGCGCGTC ACAT GAAGCGCGATGCGC AAACTTTCTAACGCC TERM 2988 1921520 - 1921491 - G 73 -9.1 -3.44381 | overlap 1921482 1921490 1921511 1921512 ATGTAAGCGAAAAAT CGCCACGCGCGTC ACAT GAAGCGCGATGCG CAAACTTTCTAACGC TERM 2989 1921664 - 1921645 - R 80 -2.2 -5.66868 | overlap 1921646 AATCAAGGAAAAAAA TTGTTACA AACA TGTAAAAA AGCTAGGCGTGATGC TERM 2990 1921684 - 1921666 - R 100 -10.3 -5.18561 | opp_overlap 1921666 CAAACATGTAAAAAA GCTAGGC GTGAT GCCTAGC TTTATACGCGGAAAC TERM 2991 1921666 - 1921684 + r 86 -11 -3.85698 | opp_overlap 1921666 CAAACATGTAAAAAA GCTAGGCG TGA TGCCTAGC TTTATACGCGGAAAC mcpC 1923665 - 1921686 - | Methyl-accepting chemotaxis protein TERM 2992 1923807 - 1923789 - R 100 -9.6 -5.60993 | opp_overlap 1923789 1923792 TTTTCCATAAAAAAA GAACCGAC GTA ATCGGTTC TTATAAGTGAAACGT TERM 2993 1923789 - 1923807 + r 72 -8.9 -3.35798 | opp_overlap 1923789, overlap 1923792 TTTTCCATAAAAAAA GAACCGA CGTAA TCGGTTC TTATAAGTGAAACGT ptsI 1925523 - 1923808 - | Phosphotransferase system (PTS) enzyme I TERM 2994 1924274 - 1924288 + g 80 -2.8 -5.44638 | opp_overlap 1924270 1924274, overlap 1924275 TCTGAGACAGACACA CCTTGT GCG ACAAGC TTTTCTTTTTCTTCT TERM 2995 1925349 - 1925364 + g 72 -6.2 -4.27914 | overlap 1925346 1925352 CTTTTAATGCGTGCG CTTGAA TGAC TTCAAG TTCTTCTTTTGCTTT ptsH 1925795 - 1925523 - | Phosphotransferase system, HPr-related protein TERM 2996 1925819 - 1925842 + r 100 -11.1 -5.40072 | opp_overlap 1925819 TTTTTATTTTGAAAA CATAGAGGG CGAAAA CCCTCTATG TTTTTTTACCGAAAA TERM 2997 1925842 - 1925819 - R 91 -11.8 -4.11216 | opp_overlap 1925819 TTTTTATTTTGAAAA CATAGAGGGC GAAA ACCCTCTATG TTTTTTTACCGAAAA ptsG 1927870 - 1925879 - | Phosphotransferase system (PTS) glucose-specific enzyme IICBA component TERM 2998 1926483 - 1926493 + g 79 -8.2 -4.11773 | TCTAGTACTCCTGCT GCGC CGA GCGC TTTTAAACGATCTTT TERM 2999 1928158 - 1928173 + r 70 -9 -3.12847 | CTTTTGCCAGTTAGC CGTTGC AAGT GCAACG TTAAATATACCGCTT glcT 1928981 - 1928136 - | Transcriptional antiterminator TERM 3000 1928705 - 1928721 + g 70 -5.8 -4.24948 | overlap 1928696 GAATATGTTCGTTCA GCGAGC TGTTC GTTCGC TTTTGAATGTGATGA TERM 3001 1929480 - 1929504 + G 75 -8.6 -3.85698 | opp_overlap 1929457 1929454, overlap 1929457 1929454 ACTTGAAGCGATCGT GCTCGTATGT AACGA ACAAACGAGC TTTGTCGAAACAAAA Aflv_1943 1929112 - 1929978 + | Predicted hydrolase of the HAD superfamily TERM 3002 1929992 - 1929957 - T 86 -10.6 -3.85698 | opp_overlap 1929960 1929963, overlap 1929960 GGTGTTGCGCATAAA TGAGAAGATGCCTC AAACGTAG GAGGCATCTTCTTA TTCGACATGAAACAT TERM 3003 1929960 - 1929989 + T 90 -12.3 -3.63515 | opp_overlap 1929957 1929960, overlap 1929963 GTTGCGCATAAATGA GAAGATGCCTC AAACGTAG GAGGCATCTTC TTATTCGACATGAAA TERM 3004 1929989 - 1929960 - T 84 -12.3 -3.00946 | opp_overlap 1929960 1929963, overlap 1929957 GTTGCGCATAAATGA GAAGATGCCTC AAACGTAG GAGGCATCTTC TTATTCGACATGAAA TERM 3005 1929963 - 1929986 + T 73 -8.2 -3.95324 | opp_overlap 1929960 1929957, overlap 1929960 GCGCATAAATGAGAA GATGCCTC AAACGTAG GAGGCATC TTCTTATTCGACATG Aflv_1944 1931098 - 1930025 - | Cell wall-associated hydrolase containing N-terminal Lys repeats TERM 3006 1930892 - 1930908 + g 78 -5.2 -4.93547 | opp_overlap 1930883 AAAAATCGTCTCTGT CGTTAA CCCAT TTAACG TTTTTAATTCATTCA TERM 3007 1930986 - 1930999 + g 73 -5.2 -4.62069 | TTTACTGTATATTGT GCGG CATCTA CCGC TTTTTCGCCTAAAAA Aflv_1945 1931210 - 1931989 + | Alpha/beta superfamily hydrolase TERM 3008 1932017 - 1931995 - T 71 -4.8 -4.63218 | opp_overlap 1931985 TTTTGCGTAAGAAAA GCTGACGA TTATTTG CCGCCAGC TTTTTGTTTTAAATC mrpG 1932362 - 1932003 - | Multisubunit Na+/H+ antiporter, G subunit mrpF 1932609 - 1932334 - | Multisubunit Na+/H+ antiporter, F subunit mrpE 1933082 - 1932606 - | Multisubunit Na+/H+ antiporter, E subunit TERM 3009 1933017 - 1933005 - G 79 -7.7 -4.32177 | GTACCCGACAAGAAA TGACG CTC CGTCA AACGAAACTGTTAAA mrpD 1934560 - 1933088 - | Multisubunit Na+/H+ antiporter, D subunit TERM 3010 1933458 - 1933445 - G 71 -2.3 -5.24129 | opp_overlap 1933457, overlap 1933446 TGCCGCGATAAAAAA CGCCC AGCC GAGCA GCGGATACGATGTTA TERM 3011 1934211 - 1934178 - G 74 -6.1 -4.52669 | gap 1, overlap 1934181 1934182 AACAAGTTAAACAAA TCACCGGTCGTAAACG CTC CGTTCAC-ACCGACAA TTAAAAATTGAAAAA TERM 3012 1934538 - 1934509 - G 78 -7.1 -4.53495 | GAAAAAAAATAAGAA CGATTGCCGTCAC AAGT GGGATGACAATCG GCAAAAGTAAGAGGT mrpC 1934885 - 1934553 - | Multisubunit Na+/H+ antiporter, C subunit TERM 3013 1934723 - 1934735 + g 74 -6.9 -4.25283 | overlap 1934722 TTTCTCCTAAAAGCG GCGGG GCT CCTGC TTTTAATCCGCCCAT mrpB 1935307 - 1934885 - | Multisubunit Na+/H+ antiporter, B subunit mrpA 1937769 - 1935304 - | Multisubunit Na+/H+ antiporter, A subunit TERM 3014 1935573 - 1935588 + g 82 -7.6 -4.44608 | opp_overlap 1935573 1935572 GCGCATTTCCTAAAT GAAAGC GGAC GCTTTC TTGTTTTTGCGTAAA TERM 3015 1936296 - 1936308 + g 77 -6.2 -4.64763 | overlap 1936287 TCAGCATGCCGAACG GCGC TTCAT GCGC TTCTTTTTTCAATAC TERM 3016 1936961 - 1936980 + g 83 -11.4 -3.06796 | opp_overlap 1936961 1936960 1936958 GCAGAATGCAAATAG GCGCTGAC AGGC GTCGGCGC TTCCATCGCATCAGG TERM 3017 1937902 - 1937863 - R 100 -9.4 -5.95166 | opp_overlap 1937896, overlap 1937865 1937897 GTGAAGCAAAAAAAA TAGAGCCTTCCGTTTACA CTAC TGTAACCGAAAAGCTCGA TGAGCCGTTTCAACC TERM 3018 1937900 - 1937865 - R 95 -12 -4.61485 | opp_overlap 1937896, overlap 1937863 1937897 GAAGCAAAAAAAATA GAGCCTTCCGTTTACA CTAC TGTAACCGAAAAGCTC GATGAGCCGTTTCAA TERM 3019 1937907 - 1937897 - R 73 -6.8 -4.2803 | opp_overlap 1937896, overlap 1937865 1937863 TACTGTAACCGAAAA GCTC GAT GAGC CGTTTCAACCGCGAC hemAT 1939341 - 1937968 - | Methyl-accepting chemotaxis protein TERM 3020 1938894 - 1938923 + g 77 -3.6 -5.08824 | opp_overlap 1938920, overlap 1938896 TCGGCTCTAACCCGA TACGTACGTG-CGC TTGG GCGACACG-ACGTC TTTTTTCAATAAACG TERM 3021 1938948 - 1938962 + g 81 -7.2 -4.68908 | opp_overlap 1938938 TAAACGCTTCGTCAA TGTTTC CAC GAAACA TTTCTTTTACGTGCA TERM 3022 1939028 - 1939044 + g 76 -6.6 -4.56597 | opp_overlap 1939027 TGTTGTTGAATAATC GAAAGC AAGTG GCTTTC TTTTTGAAGCGCGCC TERM 3023 1939357 - 1939330 - G 100 -10.7 -5.8096 | opp_overlap 1939334 1939335 1939337 GACAAAAAATAAAAA GAAAACACCCA TTTAGT TGGGTGCTTTC CATTGTTCGCCTAAC Aflv_1954 1939542 - 1939342 - | hypothetical protein TERM 3024 1939543 - 1939521 - G 89 -10.6 -3.95183 | TCATATACATAATAA GGTGCCCT TTACATG AGGGCACC TAAACGGCTTACGCA Aflv_1955 1939767 - 1939552 - | hypothetical protein Aflv_1957 1939983 - 1939780 - | hypothetical protein Aflv_1956 1939683 - 1939895 + | hypothetical protein Aflv_1958 1940352 - 1940041 - | Predicted transcriptional regulator Aflv_1959 1940445 - 1941068 + | Nitroreductase TERM 3025 1941096 - 1941073 - T 93 -6.7 -5.4505 | opp_overlap 1941075, overlap 1941075 GGGTGGAATAAAAAA GAGACCCGT TTTAAG ACGGGTCTT TTTTATATGTTGGCA TERM 3026 1941094 - 1941075 - T 86 -9.3 -4.36592 | opp_overlap 1941075, overlap 1941073 GTGGAATAAAAAAGA GACCCGT TTTAAG ACGGGTC TTTTTTATATGTTGG TERM 3027 1941075 - 1941094 + T 100 -10 -5.47431 | opp_overlap 1941075 1941073 GTGGAATAAAAAAGA GACCCGTT TTAA GACGGGTC TTTTTTATATGTTGG Aflv_1960 1942339 - 1941083 - | Signal transduction histidine kinase, nitrogen specific, contains PAS/PAC domain Aflv_1961 1942657 - 1942358 - | hypothetical protein TERM 3028 1942651 - 1942661 + g 81 -4 -5.40474 | ACAAAAAATTCCCAT TGTT CAA AACA TTTTTTTAGGCAAAT TERM 3029 1943312 - 1943294 - gR 73 -3.8 -5.00616 | GTCTGCTGTAAAAAA GTTGAAGC CAT ACGTCAAC TGCGCGGCTGATCCA Aflv_1963 1943589 - 1943308 - | hypothetical protein Aflv_1962 1942857 - 1943381 + | DNA-directed RNA polymerase specialized sigma subunit TERM 3030 1943622 - 1943602 - fH 75 -2.5 -5.252 | opp_overlap 1943602, overlap 1943604 CACGTCTATAAAAAA TGCACATAC AAT GTTTGTGGA TTCTAAATGAAAGAA Aflv_1964 1943651 - 1943971 + | hypothetical protein Aflv_1965 1944060 - 1944236 + | hypothetical protein TERM 3031 1944274 - 1944243 - T 88 -8.1 -5.1356 | gap 1, opp_overlap 1944243 GTTGAGTAATAAAAA GAGGGCTG-CTTAT TGTTG ATGAGACAGCCCTC TTTGTTGTTTACATT TERM 3032 1944243 - 1944274 + T 91 -11 -4.59489 | gap 1, opp_overlap 1944243 GTTGAGTAATAAAAA GAGGGCTG-CTTATT GTT GATGAGACAGCCCTC TTTGTTGTTTACATT Aflv_1966 1944956 - 1944252 - | Predicted nucleoside-diphosphate-sugar epimerase TERM 3033 1945038 - 1945057 + r 91 -13.6 -2.74019 | TTGTGAATTTTTTAA GGCTGGCT CATA AGCCAGCC TCATTAACGATTATC TERM 3034 1945469 - 1945488 + r 81 -12.2 -2.7012 | overlap 1945466 1945471 GAACCCTTGCGCTTC CACCACGA TACT TCGTGGTG TACTCTACTCTCTTC Aflv_1969 1947165 - 1946443 - | Organic radical activating enzyme TERM 3035 1947081 - 1947045 - G 76 -10.7 -2.59608 | overlap 1947044 ACGTAAACGATGAAT CGCACCAGCGGCAACGA TAA TCGCATCCGGCGGTGCG CACGAACATCGTTTT Aflv_1970 1947602 - 1947165 - | 6-pyruvoyl-tetrahydropterin synthase TERM 3036 1947437 - 1947424 - G 82 -4.5 -5.29385 | AAGTTAATTAAAAAA CCGGA ATCA TCCAG CTCGTCACCAGCAAC Aflv_1971 1948264 - 1947599 - | Predicted PP-loop superfamily ATPase TERM 3037 1948342 - 1948318 - H 95 -9.3 -5.45802 | overlap 1948301 GTTCTAAAACAAAAA CGCTATACCCC CTA AGGACATAGCG ATCCCTAGTTTTTTT TERM 3038 1948521 - 1948509 - H 91 -10.5 -4.61648 | overlap 1948517 AATAACAACAAGAAA GGCGC AAA GCGCC CGCCTATCGGCGAAG TERM 3039 1948583 - 1948546 - H 75 -9.8 -3.3676 | gap 2, overlap 1948547 GCGAAGAGCGCACAA GCCCCAC-C-GAGGAGGC TGTC GCCGCCGCAGTGTGGGGC GGAGCGACTCGAGCC TERM 3040 1948580 - 1948547 - H 72 -10.1 -2.61735 | overlap 1948546 CGAAGAGCGCACAAG CCCCACCGAGGAGGC TGTC GCCGCCGCAGTGTGG GGCGGAGCGACTCGA yddK 1948679 - 1949338 + | Phosphate uptake regulator PhoU TERM 3041 1949346 - 1949371 + F 100 -8.3 -5.68039 | ATTATTAAACATTTA GGTGCCTCATA TTAG TTTGAGGCATC TTTTTTTATCGCTTT Aflv_1973 1949432 - 1950343 + | Uncharacterized conserved protein, contains internal repeats TERM 3042 1950392 - 1950341 - T 75 -5.5 -4.70319 | gap 2, opp_overlap 1950343 1950347, overlap 1950344 1950345 1950347 1950354 GCACTAAAAGCAAAA TAACGATGCAAAAGGCTGTCACAAA CTTC CTTGGGACAGCCTTTTCCAT--TTA TTTTTCTTCTTTTGC TERM 3043 1950343 - 1950392 + T 89 -5.8 -5.4593 | opp_overlap 1950341 1950344 1950345 1950347 1950354, overlap 1950347 ACTAAAAGCAAAATA ACGATGCAAAAGGCTGTCACAA ACTTCC TTGGGACAGCCTTTTCCATTTA TTTTTCTTCTTTTGC TERM 3044 1950391 - 1950344 - T 80 -7.8 -4.43392 | opp_overlap 1950343 1950347, overlap 1950341 1950345 1950347 1950354 CTAAAAGCAAAATAA CGATGCAAAAGGCTGTCACAAA CTTC CTTGGGACAGCCTTTTCCATTT ATTTTTCTTCTTTTG TERM 3045 1950390 - 1950345 - T 82 -11.3 -3.24408 | opp_overlap 1950343 1950347, overlap 1950344 1950341 1950347 1950354 TAAAAGCAAAATAAC GATGCAAAAGGCTGTCACAAA CTTC CTTGGGACAGCCTTTTCCATT TATTTTTCTTCTTTT TERM 3046 1950388 - 1950347 - T 93 -13.9 -3.15276 | opp_overlap 1950343 1950347, overlap 1950345 1950344 1950341 1950354 AAAGCAAAATAACGA TGCAAAAGGCTGTCACAAA CTTC CTTGGGACAGCCTTTTCCA TTTATTTTTCTTCTT TERM 3047 1950347 - 1950388 + T 100 -13.2 -5.11254 | opp_overlap 1950347 1950345 1950344 1950341 1950354, overlap 1950343 AAAGCAAAATAACGA TGCAAAAGGCTGTCACAA ACTTCC TTGGGACAGCCTTTTCCA TTTATTTTTCTTCTT TERM 3048 1950381 - 1950354 - T 90 -10.6 -4.25566 | opp_overlap 1950347 1950343, overlap 1950347 1950345 1950344 1950341 AATAACGATGCAAAA GGCTGTCACAAA CTTC CTTGGGACAGCC TTTTCCATTTATTTT Aflv_1974 1950527 - 1950390 - | hypothetical protein TERM 3049 1950919 - 1950948 + r 76 -2.2 -5.39721 | opp_overlap 1950920 1950921, overlap 1950920 1950921 TGGAATAAAAAGAAA AG-GCGAGCCTAAT GTGC ATT-GGCTCGCTCG TTTTTTGTATGATAC TERM 3050 1950946 - 1950920 - R 89 -5.9 -5.42605 | gap 1, opp_overlap 1950919 1950920 1950921, overlap 1950921 GGAATAAAAAGAAAA GGCGAGCCTAAT GTGC ATT-GGCTCGCT CGTTTTTTGTATGAT TERM 3051 1950945 - 1950921 - R 83 -9.4 -3.83123 | gap 1, opp_overlap 1950921 1950920 1950919, overlap 1950920 GAATAAAAAGAAAAG GCGAGCCTAAT GTGC ATT-GGCTCGC TCGTTTTTTGTATGA TERM 3052 1950921 - 1950945 + r 77 -9.4 -3.48081 | gap 1, opp_overlap 1950920 1950921, overlap 1950920 1950919 GAATAAAAAGAAAAG GCGAGCCTAAT GTGC ATT-GGCTCGC TCGTTTTTTGTATGA Aflv_1975 1951409 - 1950927 - | Predicted membrane protein Aflv_1976 1952425 - 1951430 - | Uncharacterized membrane protein TERM 3053 1952490 - 1952472 - R 100 -8.1 -5.92337 | opp_overlap 1952472 1952466 ATATATGAAAAAAAA CGGCGAA TATTT TCCGCCG TTTTTCTTATTCCAC TERM 3054 1952472 - 1952490 + r 85 -5.9 -5.29445 | opp_overlap 1952472, overlap 1952466 ATATATGAAAAAAAA CGGCGAA TATTT TCCGCCG TTTTTCTTATTCCAC Aflv_1977 1952871 - 1952497 - | hypothetical protein TERM 3055 1952949 - 1952976 + H 86 -2 -5.98781 | gap 1, overlap 1952954 1952958 GATAAATATACGATG GAGGATGCACACG ATG CGTGTTCGT-TTC TTTTTTTTGCTTATC TERM 3056 1952954 - 1952972 + H 87 -5.2 -5.36018 | overlap 1952949 1952958 ATATACGATGGAGGA TGCACACG ATG CGTGTTCG TTTCTTTTTTTTGCT TERM 3057 1953511 - 1953484 - g 79 -7 -4.63172 | overlap 1953497 GATCAAACGACAAAA CAAGTGAAACGA ACGG TCGCTACACTCG ATGCGGCCGTGAGCG Aflv_1978 1952962 - 1953936 + | hypothetical protein Aflv_1979 1953939 - 1954610 + | Transcriptional regulator OmpR family (REC-wHTH) Aflv_1980 1954594 - 1956003 + | Signal transduction histidine kinase TERM 3058 1956298 - 1956288 - g 79 -6.8 -4.59882 | overlap 1956289 CTAAAAAACAAACAA CCGT TTT ACGG AACGGTGCAACGCGT TERM 3059 1956730 - 1956718 - g 74 -4.1 -5.03747 | opp_overlap 1956725, overlap 1956724 1956725 AAATGGCGGAAAAAA GCAAA ACG TCTGC CGAAGACATTTCCGA Aflv_1981 1956048 - 1956902 + | Methyl-accepting chemotaxis protein TERM 3060 1956903 - 1956918 + F 100 -6.1 -6.02919 | opp_overlap 1956903 ACGAAACTTTTATAA CTGCC CTTTGC GGCAG TTTTTTTATTTATCA mtbP 1956954 - 1958363 + | Site-specific DNA methylase TERM 3061 1958401 - 1958364 - f 100 -13.8 -4.08651 | opp_overlap 1958367 1958372, overlap 1958367 1958372 ATTTTAATCAAATAA CAATAAAAGAGTAGGA CAAGCC TCCTACTCTTTTATTA TACGTCATTTTATGG TERM 3062 1958398 - 1958367 - f 100 -13.3 -4.15884 | opp_overlap 1958367 1958372, overlap 1958364 1958372 TTAATCAAATAACAA TAAAAGAGTAGGA CAAGCC TCCTACTCTTTTA TTATACGTCATTTTA TERM 3063 1958367 - 1958398 + F 93 -13.3 -3.42124 | opp_overlap 1958367 1958364 1958372, overlap 1958372 TTAATCAAATAACAA TAAAAGAGTAGGA CAAGCC TCCTACTCTTTTA TTATACGTCATTTTA TERM 3064 1958372 - 1958393 + F 88 -8.8 -4.79352 | opp_overlap 1958367 1958364 1958372, overlap 1958367 CAAATAACAATAAAA GAGTAGGA CAAGCC TCCTACTC TTTTATTATACGTCA TERM 3065 1958393 - 1958372 - f 90 -8.8 -5.04082 | opp_overlap 1958372 1958367, overlap 1958367 1958364 CAAATAACAATAAAA GAGTAGGA CAAGCC TCCTACTC TTTTATTATACGTCA Aflv_1983 1958446 - 1959639 + | Type II site-specific deoxyribonuclease TERM 3066 1959702 - 1959727 + T 72 -3.2 -5.10601 | opp_overlap 1959695 1959699 1959702, overlap 1959699 GTTAATAAGAGACAA GGTGCCCC CCTTGCTTTC GGGACACC TTTTTCTCATTTTAT clpE 1961907 - 1959742 - | ATP-dependent Clp protease-like protein TERM 3067 1961958 - 1961934 - R 100 -4.4 -6.32976 | opp_overlap 1961934 AAAAAAATAAAAAAA CATGATAG TAAAGTGCC CTATCATG TTTTCGTCAATCCAT Aflv_1985 1962616 - 1961954 - | Transcriptional regulator, TetR/AcrR family TERM 3068 1962101 - 1962121 + g 100 -9.7 -5.07486 | overlap 1962102 AATAATGGTGTCAGG CGGGAGTTG CGC CAACTCCCC TTTTTGTTGAAAATG TERM 3069 1962102 - 1962120 + g 100 -13.2 -3.63768 | overlap 1962101 ATAATGGTGTCAGGC GGGAGTTG CGC CAACTCCC CTTTTTGTTGAAAAT Aflv_1986 1963644 - 1962613 - | ABC-type multidrug transport system, permease component Aflv_1987 1964360 - 1963641 - | ABC-type multidrug transport system, ATPase component TERM 3070 1964376 - 1964401 + r 89 -12.1 -3.70636 | opp_overlap 1964381, overlap 1964366 1964363 1964381 CTTCCCTCGCTTTCA TAAAAGTGAGT GATT ACTCACTTTTA TTATATATGTTCGTT TERM 3071 1964381 - 1964396 + r 85 -7.6 -4.88495 | opp_overlap 1964381, overlap 1964366 1964363 1964376 CTCGCTTTCATAAAA GTGAGT GATT ACTCAC TTTTATTATATATGT TERM 3072 1964396 - 1964381 - R 78 -7.6 -4.36914 | opp_overlap 1964366 1964363 1964381 1964376 CTCGCTTTCATAAAA GTGAGT GATT ACTCAC TTTTATTATATATGT Aflv_1988 1964517 - 1964437 - | hypothetical protein TERM 3073 1964727 - 1964754 + H 100 -5.6 -5.72622 | GATGTGTCATATATT GTGCACCC GTTGAAAACTTA GGGTGCAC TTTTTTATTTATCAC Aflv_1989 1964749 - 1966269 + | Amino acid transporter TERM 3074 1966269 - 1966303 + F 93 -8.5 -5.19916 | gap 1, opp_overlap 1966273, overlap 1966270 1966273 AAAACAGTCGGCATA ACAAGGCCCCCGTCCA TATT TGG-CGGGGGTCATGA TTTTTTCCGTCTTTT TERM 3075 1966270 - 1966302 + F 89 -12 -3.6951 | gap 1, opp_overlap 1966273, overlap 1966269 1966273 AAACAGTCGGCATAA CAAGGCCCCCGTCCA TATT TGG-CGGGGGTCATG ATTTTTTCCGTCTTT TERM 3076 1966299 - 1966273 - f 84 -10.1 -3.7941 | gap 1, opp_overlap 1966270 1966269 1966273 CAGTCGGCATAACAA GGCCCCCGTCCA TATT TGG-CGGGGGTC ATGATTTTTTCCGTC TERM 3077 1966273 - 1966299 + F 83 -12.3 -2.63182 | gap 1, opp_overlap 1966273, overlap 1966270 1966269 CAGTCGGCATAACAA GGCCCCCGTCCA TATT TGG-CGGGGGTC ATGATTTTTTCCGTC TERM 3078 1966536 - 1966525 - g 71 -2.2 -5.09685 | GAATATACATAAAAA CGAT CTCG ACCG CTTTCTTGCGGAGAC Aflv_1990 1966373 - 1966978 + | Stand-alone sensor domain protein TERM 3079 1967460 - 1967448 - g 86 -3.4 -5.63236 | AGTTAAAAACAAAAA CGAT TACAG ATCG AAAAGGAAAAACAAA mazF 1967150 - 1967668 + | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse) TERM 3080 1967731 - 1967748 + F 73 -5.6 -4.58395 | opp_overlap 1967730 ATTACAAAATAAGTT GTCTGT CTCGTC ACAGAC TTTTTCACACGTAAA TERM 3081 1967793 - 1967817 + F 100 -15.8 -3.79473 | opp_overlap 1967795 TTTGTTTTTGCAACG GAGAGGAGCC GTTTA GGCTCCTCTC TTTACATATTATCGT TERM 3082 1967815 - 1967795 - f 83 -12.6 -2.52464 | opp_overlap 1967793 TGTTTTTGCAACGGA GAGGAGCC GTTTA GGCTCCTC TCTTTACATATTATC TERM 3083 1967915 - 1967936 + F 100 -12.3 -4.14652 | AAATCATCGTTTTTG CCCCAGTAC TTCG GTGCTGGGG TTTCGTATTTTTCAT TERM 3084 1968222 - 1968211 - g 71 -2.2 -5.09685 | GAATATACATAAAAA CGAT CTCG ACCG CTTTCTTGCGGAGAC TERM 3085 1968564 - 1968553 - g 70 -5.8 -4.29396 | opp_overlap 1968553 AATTATTGACCAAAA CGCA TCGT TGCG TTTATATGATGAACG TERM 3086 1968860 - 1968827 - g 75 -2.4 -5.26155 | gap 2, overlap 1968828 1968829 ATACAAACACAAAAA CTCGAACTTGTCGGCA CGCT CGCCG-CAAGCACG-G CACACGAAATTCGCA kinD 1968059 - 1969486 + | Signal transduction histidine kinase TERM 3087 1969516 - 1969549 + G 100 -8.1 -5.35224 | gap 1, overlap 1969519 ATCGGAAGCACGTTA TCGGCGCTAGCGACAG GAG CTGGCGCT-GTTCCGA TTTTATTTTTGTCGC TERM 3088 1969932 - 1969942 + G 90 -2.4 -5.95539 | CGCACCTGAAGGATT GCTC GTT GCGC TTTTTTTATTTAACC Aflv_1993 1969483 - 1970220 + | Predicted divalent heavy-metal cations transporter TERM 3089 1970262 - 1970213 - T 100 -18.3 -3.75153 | gap 1, opp_overlap 1970228, overlap 1970228 TGTTTTTAATTGAAA CATATTAATGAAAAAGAAGGAGCG TTA CGCCCCTTCTTTTTC-TTCATATG GATGTGCCACCCAAC TERM 3090 1970228 - 1970248 + T 93 -11.1 -5.16841 | opp_overlap 1970228 1970213 CATATTAATGAAAAA GAAGGAGCG TTA CGCCCCTTC TTTTTCTTCATATGG TERM 3091 1970248 - 1970228 - T 100 -13.3 -4.91873 | opp_overlap 1970228, overlap 1970213 CATATTAATGAAAAA GAAGGAGCG TTA CGCCCCTTC TTTTTCTTCATATGG Aflv_1994 1970773 - 1970237 - | Uncharacterized conserved protein, contains double-stranded beta-helix domain Aflv_1995 1971394 - 1970786 - | Methylthioribulose-1-phosphate dehydratase Aflv_1996 1972062 - 1971391 - | Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling TERM 3092 1971439 - 1971477 + g 70 -5.2 -4.56597 | opp_overlap 1971439, overlap 1971440 GATGACATCATAAAA CGTCGTGAACGGGGTATG TGG CAAGTTTCGTTCACGGCA TTTTTCAAGCAAAAA TERM 3093 1971440 - 1971476 + g 71 -8.7 -3.33744 | opp_overlap 1971439, overlap 1971439 ATGACATCATAAAAC GTCGTGAACGGGGTATG TGG CAAGTTTCGTTCACGGC ATTTTTCAAGCAAAA Aflv_1997 1973267 - 1972047 - | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, RuBisCO large chain family TERM 3094 1973311 - 1973294 - R 100 -9.9 -5.72622 | opp_overlap 1973302 1973305 TTTACAAATAAAAAA CCTCTTC ATAA GAAGAGG CTCAATCGTTCGTCT TERM 3095 1973457 - 1973467 + r 73 -5.4 -4.60924 | ATGTATACAATTTTT CGAA CAG TTCG TTTTTCACAAATTTA Aflv_1998 1974625 - 1973525 - | Aspartate aminotransferase TERM 3096 1974253 - 1974229 - G 80 -11.5 -2.57564 | overlap 1974228 TTAGCCCTTCATAAT CGGGCAAAAAA CCG TTTTCCGCCCG CAATGGCATCATTTC Aflv_1999 1974785 - 1975588 + | Predicted amidohydrolase TERM 3097 1975798 - 1975773 - f 72 -8.3 -3.59202 | opp_overlap 1975773 1975795, overlap 1975788 1975795 TAGGCTGAGAGATAA GAGGTGCGAAG CAAA CTTCAAACCTC TTTCGTTCAGCGAAA TERM 3098 1975817 - 1975795 - g 100 -12.1 -3.74178 | opp_overlap 1975773 1975795, overlap 1975773 1975788 GAAGCAAACTTCAAA CCTCTTTCG TTCAG CGAAAGAGG TTTTTTATTTATGTC TERM 3099 1975795 - 1975817 + G 100 -12.8 -5.76237 | opp_overlap 1975773 1975795 1975788, overlap 1975773 GAAGCAAACTTCAAA CCTCTTTCGT TCA GCGAAAGAGG TTTTTTATTTATGTC TERM 3100 1975888 - 1975875 - g 80 -3.8 -5.29716 | TTAACAGAACAAAAA GCGA TCGCTC TCGC TGTCCGCTTAGGGCT TERM 3101 1976949 - 1976973 + G 81 -11.5 -2.73771 | opp_overlap 1976960, overlap 1976948 1976951 CGCGAGCTGATCGTC CATCGACACAA TCT TCGTGTCGATG ATTTCAAACGTCTCG Aflv_2000 1975776 - 1977017 + | Predicted kinase Aflv_2001 1977025 - 1978062 + | Translation initiation factor eIF-2B alpha subunit TERM 3102 1978784 - 1978770 - g 71 -7 -4.21351 | opp_overlap 1978769 1978770 AAATATCCGAATAAA GGCGAC ATC GACGCC GTCTTTGCGACGTGG rbsB 1978059 - 1979171 + | ABC-type sugar transport system, periplasmic component rbsA 1979168 - 1980661 + | ABC-type sugar transport system, ATPase component TERM 3103 1980875 - 1980892 + G 71 -6.9 -4.21194 | overlap 1980878 GCTTAGCAACGATCG CCAGCGC CTCC GCGCTCG TTTTACATCGTCAAG rbsC 1980658 - 1981617 + | ABC-type sugar transport system, permease component TERM 3104 1981640 - 1981615 - T 93 -7.6 -5.45726 | opp_overlap 1981618, overlap 1981618 CATATCGTAAAAAAA TAACCCACCT TATGCG AGGTGGGTTT CAAACGTCCGTTCTT TERM 3105 1981618 - 1981637 + T 79 -10 -3.5594 | opp_overlap 1981615 1981618 ATCGTAAAAAAATAA CCCACCTT ATGC GAGGTGGG TTTCAAACGTCCGTT TERM 3106 1981637 - 1981618 - T 89 -9.3 -4.80853 | opp_overlap 1981618, overlap 1981615 ATCGTAAAAAAATAA CCCACCT TATGCG AGGTGGG TTTCAAACGTCCGTT tlpA 1983369 - 1981624 - | Methyl-accepting chemotaxis protein kinE 1985603 - 1983414 - | Signal transduction histidine kinase TERM 3107 1985732 - 1985717 - R 100 -6.1 -6.47228 | GAATTAAAAAAAAAA GCAGC GCATCG GCTGC TTAACGATCGGTAAT Aflv_2007 1986395 - 1985733 - | hypothetical protein Aflv_2008 1987813 - 1986395 - | Uncharacterized conserved protein containing a ferredoxin-like domain TERM 3108 1987257 - 1987271 + g 89 -7.1 -5.02287 | overlap 1987230 GCACGCGCATGAAGT GCCAG TTCTT CTGGC TTTTCTGTTTTTGTA TERM 3109 1987564 - 1987576 + g 84 -2.6 -5.61824 | opp_overlap 1987564, overlap 1987553 TTTGCGCAAAAAAGA CGTG CCCCC CGCG TTTTTTTACGTTTTC Aflv_2009 1988541 - 1987825 - | Fe-S oxidoreductase TERM 3110 1987951 - 1987964 + g 77 -3.9 -5.14563 | GTCGGCTTCGACTTG TTCAA TACA TTGAA TTTTTTCATCCACCA TERM 3111 1988558 - 1988569 + r 75 -3 -5.22039 | opp_overlap 1988558 CCCGATCCCCCTAAA GAAA ACGT TTTC TTTTTTCACTTTACA TERM 3112 1988640 - 1988630 - R 84 -8.2 -4.73613 | TGATGATTAAGAAAA GCGC AAA GCGC CCCAATTTCGCCTAA TERM 3113 1988680 - 1988658 - R 79 -11.2 -2.72461 | overlap 1988657 1988661 CAATTTCGCCTAAAG GCAGCCCGCA TCC TGCGGGCAAC GGCGACATGTCGCCA TERM 3114 1988677 - 1988661 - R 91 -13.7 -2.64155 | overlap 1988658 1988657 TTTCGCCTAAAGGCA GCCCGCA TCC TGCGGGC AACGGCGACATGTCG Aflv_2010 1989552 - 1988806 - | Transcriptional regulator, GntR family TERM 3115 1991010 - 1991024 + G 72 -7.1 -4.07568 | opp_overlap 1991003, overlap 1991005 1991003 AAACAGATGAGCTGG CGAGC ATGCC GCTCG TTTTAGCCGAAGGCG TERM 3116 1991089 - 1991101 + G 71 -6.9 -4.15044 | overlap 1991090 GGCGCCGCTCATTGG TGCGC TCG GCGCG TTTATTGCAGGAAGC Aflv_2011 1989719 - 1991494 + | L-lactate permease TERM 3117 1991502 - 1991525 + T 91 -8.2 -5.18357 | gap 1, opp_overlap 1991502 CAGCATAATCAAAAA GGGTGTCCTGT AAA AC-GGATACCC TTTTTTACTCGATTA TERM 3118 1991525 - 1991502 - T 82 -6 -4.94972 | gap 1, opp_overlap 1991502 CAGCATAATCAAAAA GGGTGTCCTGT AAA AC-GGATACCC TTTTTTACTCGATTA Aflv_2012 1992032 - 1991538 - | hypothetical protein TERM 3119 1991779 - 1991807 + g 70 -7.6 -3.73775 | AATATTTTTTCCTTC GAGATTAAAGAA AGAAC TTCTTTAATCGC TTTACTCGCCATAAA Aflv_2013 1993232 - 1992129 - | Transposase TERM 3120 1992288 - 1992305 + g 78 -4.2 -5.17576 | opp_overlap 1992288, overlap 1992274 1992280 GGATGATGGAAACCA CTTATC TATTTT GATAAG TTTTTTCCCTTGCTC Aflv_2014 1994017 - 1993727 - | hypothetical protein Aflv_2015 1995257 - 1993998 - | Predicted ATPase TERM 3121 1994591 - 1994604 + g 84 -3.9 -5.5454 | opp_overlap 1994591 GGAAGTAATTTAACA TATTC AAAA GAATA TTTTTATTTGTTTCG TERM 3122 1994775 - 1994760 - G 71 -4.7 -4.58395 | opp_overlap 1994749 1994760 1994762, overlap 1994762 TGCAGTCGCTAAAAA GAGAC GATTTT GTCTC GTCTTTGATCTTTTA TERM 3123 1995618 - 1995632 + G 72 -7.8 -3.77489 | opp_overlap 1995618, overlap 1995613 1995611 TTATATCGCCGCAAA CCCGAT GTC GTCGGG TTTAGCTGTTACATT TERM 3124 1996940 - 1996926 - g 84 -2.7 -5.65496 | CATCAAAAACAAAAA CCGCG CAAAC CGTGG TGGGATGAAAAAACG TERM 3125 1996983 - 1996962 - g 73 -7.3 -4.11869 | opp_overlap 1996966 GAAAAAACGGACAAA CATATGCGC GCAC GCGTATATG AAAAACTGTCCGAAC Aflv_2016 1995417 - 1997183 + | Radical SAM superfamily enzyme TERM 3126 1997174 - 1997205 + T 93 -12.5 -4.01703 | opp_overlap 1997174 1997180, overlap 1997180 GTATTTTTTAGAAAT GGAAAAGTAGGAG CCTCCA CTCCTACTTTTTC TTCTTTACCTCTTCT TERM 3127 1997205 - 1997174 - T 77 -11 -2.91924 | opp_overlap 1997174 1997180, overlap 1997180 GTATTTTTTAGAAAT GGAAAAGTAGGAGC CTCC ACTCCTACTTTTTC TTCTTTACCTCTTCT TERM 3128 1997199 - 1997180 - T 85 -8.6 -4.39571 | opp_overlap 1997174 1997180, overlap 1997174 TTTAGAAATGGAAAA GTAGGAGC CTCC ACTCCTAC TTTTTCTTCTTTACC TERM 3129 1997180 - 1997199 + T 93 -7.9 -5.38549 | opp_overlap 1997180 1997174, overlap 1997174 TTTAGAAATGGAAAA GTAGGAG CCTCCA CTCCTAC TTTTTCTTCTTTACC Aflv_2017 1997330 - 1997196 - | hypothetical protein Aflv_2018 1997482 - 1997327 - | hypothetical protein Aflv_2019 1997619 - 1997479 - | hypothetical protein TERM 3130 1998002 - 1997985 - gR 87 -6.2 -5.08601 | opp_overlap 1997985, overlap 1997963 1997987 TTACTCGAAGAAAAA CGGAGC GAACTA GCCCCG TTTGCTCATCCAGAT Aflv_2020 1997601 - 1998044 + | hypothetical protein TERM 3131 1998032 - 1998057 + Tr 100 -12.6 -4.31692 | opp_overlap 1998024 1998023 1998021 TAAAGACGTCGGATA CGGGGCGGAT TGACAC ATTCGCCCCG TTTTCGTCATACATT TERM 3132 1998197 - 1998180 - TR 95 -8.4 -5.46129 | GAAGAAATGAAAAAA GGGGGA TCATTT TCCCCC TGTAAATGAAATGCC araQ 1999001 - 1998186 - | ABC-type sugar transport system, permease component Aflv_2022 1999904 - 1999014 - | ABC-type sugar transport system, permease component TERM 3133 1999968 - 2000021 + r 74 -5.3 -4.67607 | gap 1, opp_overlap 1999974 1999977 1999978 1999982, overlap 1999978 1999982 TGTGTATCACTTCAC TTGAAAGAAGGGAACAGC-GAGGGGA ATG TCCCCTCAGCCGTTACTTCGCTTCAA TTTCTTTATTCGCAA TERM 3134 2000014 - 1999974 - R 82 -10.6 -3.60627 | opp_overlap 1999968 1999978 1999982, overlap 1999977 1999978 1999982 TCACTTCACTTGAAA GAAGGGAACAGC-GAGGGGA ATG TCCCCTCAGCCGTTAC-TTC GCTTCAATTTCTTTA TERM 3135 2000012 - 1999977 - R 79 -9 -3.9392 | gap 1, opp_overlap 1999968 1999978 1999982, overlap 1999974 1999978 1999982 CTTCACTTGAAAGAA GGGAACAGC-GAGGGGA ATG TCCCCTCAGCCGTTACT TCGCTTCAATTTCTT TERM 3136 1999978 - 2000011 + r 75 -10.3 -3.2285 | gap 1, opp_overlap 1999977 1999974 1999978 1999982, overlap 1999968 1999982 TTCACTTGAAAGAAG GGAACAGC-GAGGGGA ATG TCCCCTCAGCCGTTAC TTCGCTTCAATTTCT TERM 3137 2000011 - 1999978 - R 84 -12.5 -2.96031 | gap 1, opp_overlap 1999978 1999968 1999982, overlap 1999977 1999974 1999982 TTCACTTGAAAGAAG GGAACAGC-GAGGGGA ATG TCCCCTCAGCCGTTAC TTCGCTTCAATTTCT TERM 3138 2000007 - 1999982 - R 86 -11.9 -3.33509 | gap 1, opp_overlap 1999978 1999968 1999982, overlap 1999978 1999977 1999974 CTTGAAAGAAGGGAA CAGC-GAGGGGA ATG TCCCCTCAGCCG TTACTTCGCTTCAAT TERM 3139 1999982 - 2000007 + r 75 -9.7 -3.40788 | gap 1, opp_overlap 1999982 1999978 1999977 1999974, overlap 1999978 1999968 CTTGAAAGAAGGGAA CAGC-GAGGGGA ATG TCCCCTCAGCCG TTACTTCGCTTCAAT TERM 3140 2000031 - 2000046 + r 72 -3.2 -5.03145 | overlap 2000032 2000043 CTTCAATTTCTTTAT TCGCAA TGTC TTGCGC TTTTTTGAGCGCTTC Aflv_2023 2001276 - 2000008 - | ABC-type sugar transport system, periplasmic component TERM 3141 2000597 - 2000607 + g 70 -5.4 -4.42974 | ACCACTTTCGGATCG GCAA AGC TTGC TTTATTGTCTGTCAC pgcM 2002020 - 2001331 - | Phosphatase/phosphohexomutase HAD superfamily Aflv_2025 2004398 - 2002017 - | Sugar hydrolase/phosphorylase TERM 3142 2002578 - 2002591 + g 85 -5.9 -5.19003 | opp_overlap 2002578 GTAATCTTCAAAAAT CGTGC CGAC GCGCG TTTGTTTTTTATATT degA 2005461 - 2004430 - | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 3143 2005045 - 2005055 + g 74 -6.8 -4.30978 | opp_overlap 2005043 2005045, overlap 2005027 GACTTCCGTTAAATA CGGA TCG TCCG TTTTAATGCCTTGCA TERM 3144 2005556 - 2005525 - H 93 -6.8 -5.46657 | gap 1, opp_overlap 2005525 2005542, overlap 2005512 GATTGCAACAAAAAA TTTGTGACAAAATTC GTG GCATTTTGTC-CAAA AATGCTCTCCCTTCC TERM 3145 2006566 - 2006548 - g 86 -11.8 -2.9175 | CATACGTCAACGACA TGTCGCAA ACG TTGCGACA AAACGCAGAAACAAC TERM 3146 2007087 - 2007076 - g 70 -7.2 -3.84719 | AGTCGCAAACGCAAA CGGC GCAC GCCG TACATGTGATGAATG mcpB 2005842 - 2007431 + | Methyl-accepting chemotaxis protein TERM 3147 2007436 - 2007472 + F 80 -4.6 -5.22312 | opp_overlap 2007441, overlap 2007435 2007445 TTCACATGTAGCTCG GACAACCGTCC-TTCTTT TCA AGTGAAAGGACGGTT-TC TTTTTTCATCTCGCT TERM 3148 2007445 - 2007468 + F 83 -6 -5.10526 | opp_overlap 2007441, overlap 2007435 2007436 AGCTCGGACAACCGT CCTTCTTTTC AAGT GAAAGGACGG TTTCTTTTTTCATCT TERM 3149 2007913 - 2007866 - g 78 -9.2 -3.71487 | gap 1, opp_overlap 2007881 TATTACATCGAACAA CTGCAACTCGAAGCACGGACGCT TGA AACGTTCGTG-TTCGAATGGCTG CAAGCGCGTGAATGG Aflv_2028 2007506 - 2008609 + | Sugar diacid utilization regulator TERM 3150 2008614 - 2008624 + F 70 -2.6 -5.10968 | CAAAAAAATAAGATG TAAA CGT TTTA TTTTTATATATTCAT TERM 3151 2008645 - 2008658 + F 100 -9.5 -6.02345 | ATATATTCATCCATA GCGGG TTTT CCCGC TTTTTTTTATGCTTA TERM 3152 2009034 - 2009016 - g 81 -7.4 -4.731 | opp_overlap 2009028 AATTGATGAAGAAAA CTTAACGG TTA CCGTTCAG CCGGGCGTTATTACG Aflv_2029 2008705 - 2010117 + | Glycolate oxidase, subunit GlcD TERM 3153 2010925 - 2010935 + G 71 -4.6 -4.7373 | overlap 2010917 TTACAAACGCTGGCG GGTG CGG CGCC TTTTTAATCGAATAC Aflv_2030 2010114 - 2011457 + | Glycolate oxidase, iron-sulfur subunit GlcF TERM 3154 2011457 - 2011476 + T 91 -6.4 -5.45813 | TAAACAAATCGGATA GGGTATGG ACAT TCATGCCC TTTTCTTTTTTAATC Aflv_2031 2012299 - 2011469 - | Phage replication protein TERM 3155 2012153 - 2012166 + g 77 -4.5 -5.00884 | overlap 2012152 CCATGTATATCCATC GTACG TATG CGTGC TTTTTTCGAGCCAAT TERM 3156 2012361 - 2012343 - R 100 -9.6 -5.79595 | opp_overlap 2012343 GGCGAAAAGAAAAAA GAGAATGC GAT GCATTCCC TTTATGGTTCTGGTG TERM 3157 2012343 - 2012361 + r 73 -7.4 -4.11281 | opp_overlap 2012343 GGCGAAAAGAAAAAA GAGAATGC GAT GCATTCCC TTTATGGTTCTGGTG Aflv_2032 2012890 - 2012363 - | Ferritin TERM 3158 2012925 - 2012898 - R 70 -8.5 -3.27475 | opp_overlap 2012898 2012904, overlap 2012904 CCTCTCATTATAACA GAAAAAGGAGG AACGTG CCTCCTTTTAC TCGTTTTGCGCTTTT TERM 3159 2012919 - 2012904 - R 83 -6.1 -5.16133 | opp_overlap 2012898 2012904, overlap 2012898 ATTATAACAGAAAAA GGAGG AACGTG CCTCC TTTTACTCGTTTTGC TERM 3160 2012904 - 2012919 + r 74 -6.1 -4.42667 | opp_overlap 2012904 2012898, overlap 2012898 ATTATAACAGAAAAA GGAGG AACGTG CCTCC TTTTACTCGTTTTGC Aflv_2033 2013872 - 2012922 - | Membrane protein TerC ortholog TERM 3161 2013798 - 2013775 - G 100 -15.4 -5.24449 | TATAAACGCAAAAAA GACCTTTGCC GAAC GGCAAAGGTC TCGCTAGACACATAG Aflv_2034 2015372 - 2013957 - | Amino acid transporter TERM 3162 2014713 - 2014686 - G 71 -4 -4.77896 | overlap 2014689 TAAGTAAGCGAAAAA CACCGTCGCAGC TCCT GCCGCAACACCG GAAAATCCAAACGGC TERM 3163 2015261 - 2015275 + g 73 -10 -3.06796 | TCCCGATAATCGCAC CGATGC CAA GCATCG TTAAATCAAATGCGC kinB 2016736 - 2015465 - | Signal transduction histidine kinase TERM 3164 2015626 - 2015638 + g 72 -7.7 -3.80461 | opp_overlap 2015625 2015626 ACGGCTCACCAAAAC GAGCA AGT TGCTC TTTCGTCATCCCTTC TERM 3165 2015977 - 2015998 + g 78 -5.9 -4.88918 | GGTTTAATTCCTCGA GGGCGATAT TCAT ATATTGCTC TTTTGTTTCCGCTGA TERM 3166 2016288 - 2016256 - G 72 -7.8 -3.76413 | gap 1, opp_overlap 2016250, overlap 2016250 CTTGAAAATCGGAAA TGGCGACCGCCAACA CCGT TGCT-GCAATCGCCA AAAGAAACGTCATCG TERM 3167 2016322 - 2016296 - G 73 -5.1 -4.66535 | gap 1, opp_overlap 2016312 AATCGCCAAAAGAAA CGTCATCGCTGC CGAA GCAACGA-GCCG CTGCTTTCTTGTAAG TERM 3168 2016312 - 2016326 + g 70 -5.6 -4.32177 | opp_overlap 2016296 GTCATCGCTGCCGAA GCAACG AGC CGCTGC TTTCTTGTAAGCTGC TERM 3169 2016511 - 2016500 - G 72 -7.2 -3.96148 | overlap 2016486 2016485 CGTGCCGATGAGAAA CGGC ACTT GCCG CAAATCGTGCACGCA TERM 3170 2016972 - 2016958 - g 76 -7.8 -4.16842 | TTTACGCTGAACAAA TCGGGG CTA CCCCAA CACAACTCGGCTGGT blt 2016855 - 2018021 + | Permease of the major facilitator superfamily TERM 3171 2018029 - 2018010 - T 93 -10.7 -4.68994 | opp_overlap 2018010 ACCATGATGCAAAAA GGCTCCG TTTAAT CGGAGCC TTAACTAATTTCCTC TERM 3172 2018010 - 2018029 + T 79 -10.7 -3.17054 | opp_overlap 2018010 ACCATGATGCAAAAA GGCTCCG TTTAAT CGGAGCC TTAACTAATTTCCTC Aflv_2037 2019067 - 2018030 - | Glycosyltransferase involved in cell wall biogenesis TERM 3173 2018469 - 2018455 - GT 72 -7.8 -3.78234 | overlap 2018447 ACGGAAAGCCAAGAA GTGGCA CAA CGCCAC GTAAAAACAGATTCA Aflv_2038 2020734 - 2019022 - | hypothetical protein TERM 3174 2020801 - 2020753 - R 89 -12.1 -3.68738 | gap 1, opp_overlap 2020765, overlap 2020765 GTTCGAATAAACGAA CG-GATAAAAAAATAGCCATCG ACCATG CGATGACTACTTTTTCATCACG ATTCCATATACGCTC TERM 3175 2020788 - 2020765 - R 100 -7.5 -5.66684 | opp_overlap 2020765, overlap 2020753 GAACGGATAAAAAAA TAGCCATCG ACCATG CGATGACTA CTTTTTCATCACGAT Aflv_2039 2021349 - 2020786 - | SAM-dependent methyltransferase TERM 3176 2021948 - 2021930 - g 90 -7.4 -5.22039 | TTGAAAGGGAAAAAA GCGCTTCA CAT TCAAGCGC GCGGAGGCATGTACT Aflv_2040 2021510 - 2022145 + | Acyl carrier protein phosphodiesterase TERM 3177 2022152 - 2022183 + F 93 -5.8 -5.54079 | opp_overlap 2022152 2022154, overlap 2022153 2022154 2022156 CGGTTTTAGATGAAA TAGAGGTGTCTTGA AACT TCAAGGCGCCTCCC TTTTTTACTTTTTAC TERM 3178 2022153 - 2022182 + F 79 -9.3 -3.90007 | opp_overlap 2022152 2022154, overlap 2022152 2022154 2022156 GGTTTTAGATGAAAT AGAGGTGTCTTGA AACT TCAAGGCGCCTCC CTTTTTTACTTTTTA TERM 3179 2022181 - 2022154 - f 72 -8.4 -3.5032 | opp_overlap 2022153 2022152 2022154 2022156, overlap 2022152 GTTTTAGATGAAATA GAGGTGTCTTGA AACT TCAAGGCGCCTC CCTTTTTTACTTTTT TERM 3180 2022154 - 2022181 + F 83 -12.8 -2.91564 | opp_overlap 2022154 2022152, overlap 2022153 2022152 2022156 GTTTTAGATGAAATA GAGGTGTCTTGA AACT TCAAGGCGCCTC CCTTTTTTACTTTTT TERM 3181 2022156 - 2022179 + F 72 -9.6 -2.96808 | opp_overlap 2022154 2022152, overlap 2022154 2022153 2022152 TTTAGATGAAATAGA GGTGTCTTGA AACT TCAAGGCGCC TCCCTTTTTTACTTT Aflv_2041 2022296 - 2022889 + | hypothetical protein TERM 3182 2022958 - 2022907 - T 82 -11.1 -3.53012 | gap 2, opp_overlap 2022912, overlap 2022911 TTGTTGTTTCTTAAA GAAATGGGGCTGCCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCCTTTTC ATGCTTAAAAATGCT TERM 3183 2022954 - 2022911 - T 74 -6.1 -4.41348 | gap 2, opp_overlap 2022912, overlap 2022907 TGTTTCTTAAAGAAA TGGGGCTGCCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCCT TTTCATGCTTAAAAA TERM 3184 2022912 - 2022953 + T 90 -9.6 -4.3534 | gap 2, opp_overlap 2022911 2022907 GTTTCTTAAAGAAAT GGGGCTGCCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGCTTAAAA Aflv_2042 2023210 - 2023046 - | hypothetical protein TERM 3185 2023120 - 2023097 - G 87 -6.1 -5.08169 | opp_overlap 2023097 ACATACTTGAAAAAA GCAAAACAA TAACCG TTGTTTCGC TTCGTCTAACTCCAT TERM 3186 2023368 - 2023348 - R 84 -6.8 -4.87318 | opp_overlap 2023348 TTGAAAATTTAAAAA GCCAGCGC CGAAC ACGCTAGC TTTTTACGCCGATGT TERM 3187 2023390 - 2023402 + r 95 -6.2 -5.62219 | CGCCGATGTTTTTGT CGGG AAACG CCCG TTTTTTTCATCTGTT Aflv_2043 2024472 - 2023372 - | Predicted amino acid racemase TERM 3188 2023542 - 2023580 + g 84 -11.7 -3.22091 | gap 1, opp_overlap 2023541 2023538, overlap 2023579 CAATAATCATATGAT CGCTGCTTGAG-CCGATG ATAT CAACGGGCGCAAGCGGCG TTAATCCGTTGACGT Aflv_2044 2025566 - 2024469 - | GFO/IDH/MOCA family oxidoreductase fused to GTPase/ATPase domain TERM 3189 2025632 - 2025600 - R 87 -5 -5.52384 | gap 1, opp_overlap 2025600 TCTCCATGAAAAAAA CATCTTACTTTACCA CAAT CGG-AAAGAAAGATG TCCTCTACTTCATAT TERM 3190 2025801 - 2025767 - R 81 -11.7 -2.83382 | gap 1, opp_overlap 2025774, overlap 2025774 GATTAAACTTGAAAT GA-AAAAACATGGCGC AATG ACGCCATGTTTTTATC GGAACATCATATCGT TERM 3191 2025793 - 2025774 - R 100 -10 -5.37593 | opp_overlap 2025774, overlap 2025767 CTTGAAATGAAAAAA CATGGCGC AATG ACGCCATG TTTTTATCGGAACAT TERM 3192 2025774 - 2025793 + r 89 -9.3 -4.83169 | opp_overlap 2025774 2025767 CTTGAAATGAAAAAA CATGGCG CAATGA CGCCATG TTTTTATCGGAACAT Aflv_2045 2027212 - 2025797 - | Malic enzyme TERM 3193 2026502 - 2026492 - G 75 -8.2 -3.76048 | CTGCAAGCAAGACAA CGGC TGT GCCG TGCTGGTCATCATGA TERM 3194 2026689 - 2026711 + g 78 -7.1 -4.43477 | gap 1 AACGCATCGACGCCC GCGA-GTTGT TTAA ACAACATCGC TTTTCCTTCCATGAC ansB 2028654 - 2027245 - | Aspartate ammonia-lyase ansA 2029674 - 2028655 - | L-asparaginase TERM 3195 2029745 - 2029761 + G 95 -7.9 -5.19998 | opp_overlap 2029745 2029744, overlap 2029748 ACTATAAATAAAATT GTTCGCG ATT CGCGTAC TTTTATTTTCATTAT Aflv_2048 2029743 - 2029931 + | hypothetical protein TERM 3196 2030198 - 2030179 - T 95 -6.4 -5.69068 | GAAAAACATAAAAAA TAGGCGCC TCAA AACGCCTA CTGAACGATCCGTGC Aflv_2049 2030957 - 2030196 - | Serine/threonine protein kinase Aflv_2050 2031130 - 2030957 - | hypothetical protein TERM 3197 2031236 - 2031226 - H 81 -2.6 -5.56264 | GCGAAATAGAAAAAA TTTT ATG AAAA TACAAAAGAAGGGGG azlC 2031253 - 2031948 + | Branched-chain amino acid permease (azaleucine resistance) Aflv_2052 2031938 - 2032240 + | hypothetical protein TERM 3198 2032267 - 2032245 - T 90 -9.9 -4.41114 | CGATCATATAACAAA GGTGTCCAA CATGC TCGGACACC CTACATCTTTTACAC Aflv_2053 2033224 - 2032277 - | Permease of the drug/metabolite transporter (DMT) superfamily TERM 3199 2032546 - 2032533 - G 86 -6.7 -4.99134 | ACGGGAAACGAAAAA GTGAC AGAC GTCAC TCGCCACCATTCCCA TERM 3200 2033373 - 2033397 + r 93 -10 -4.7078 | opp_overlap 2033373 TCCACAAACAAAAAA CCCGAGCTCT TTTCC AGAACTCGGG TTTTTCGATGATTCC TERM 3201 2033397 - 2033373 - R 100 -12.2 -5.72622 | opp_overlap 2033373 TCCACAAACAAAAAA CCCGAGCTCT TTTCC AGAACTCGGG TTTTTCGATGATTCC Aflv_2054 2034483 - 2033899 - | hypothetical protein TERM 3202 2034650 - 2034600 - H 76 -9.3 -3.69734 | gap 1, opp_overlap 2034600 2034603 2034612 2034641, overlap 2034641 AAGAATTTATTGAAA TCGTCGTAACTATTCAGC-CACAT GATC AAGTGAGCTGAATAGTTACAATAA CTTATATAACACTTC TERM 3203 2034603 - 2034647 + H 76 -11 -2.63079 | gap 1, opp_overlap 2034600 2034641, overlap 2034600 2034612 2034641 AATTTATTGAAATCG TCGTAACTATTCAGC-CACAT GATC AAGTGAGCTGAATAGTTACAA TAACTTATATAACAC TERM 3204 2034887 - 2034864 - H 82 -4 -5.52023 | ACCATTAAGAAAAAA TTTTAGATTT TAGC AAAACTAAAA AATCCCTTGAAGCCT TERM 3205 2034916 - 2034890 - H 100 -11.7 -5.48054 | gap 1, opp_overlap 2034890 2034909 AGCAAAACTAAAAAA TCCCTTGAAGCC TTAT GGCT-CAAGGGA TTTCACTTGATGATT TERM 3206 2034890 - 2034916 + H 91 -11.7 -3.79445 | gap 1, opp_overlap 2034890, overlap 2034909 AGCAAAACTAAAAAA TCCCTTGAAGCC TTAT GGCT-CAAGGGA TTTCACTTGATGATT TERM 3207 2036090 - 2036131 + H 100 -11 -5.37043 | opp_overlap 2036091 2036093, overlap 2036091 ATGGATAAAATAGAA AGTTCCCAGTTGATGAAG CCTACA CTTCATTAACTGGGACCA TTTTTTATATGAACT TERM 3208 2036091 - 2036130 + H 100 -14.5 -3.81141 | opp_overlap 2036091 2036093, overlap 2036090 TGGATAAAATAGAAA GTTCCCAGTTGATGAAG CCTACA CTTCATTAACTGGGACC ATTTTTTATATGAAC TERM 3209 2036130 - 2036091 - H 100 -13 -4.51238 | opp_overlap 2036091 2036090, overlap 2036093 TGGATAAAATAGAAA GTTCCCAGTTGATGAAGC CTAC ACTTCATTAACTGGGACC ATTTTTTATATGAAC TERM 3210 2036128 - 2036093 - H 93 -14.2 -2.5671 | opp_overlap 2036091 2036090, overlap 2036091 GATAAAATAGAAAGT TCCCAGTTGATGAAGC CTAC ACTTCATTAACTGGGA CCATTTTTTATATGA TERM 3211 2036608 - 2036598 - g 78 -5.4 -5.03145 | CAATTTGCCAAAAAA CGAA GCC TTCG TCACGGGCAACACAC TERM 3212 2036689 - 2036722 + G 71 -8.9 -3.39955 | CTGGGGGCATTCTCT CGTTTGGCTCATGGT TCAT ACGATGACCCAAGCG TTCCCTTTTGCCTTT Aflv_2055 2036213 - 2037445 + | Transposase Aflv_2056 2038672 - 2037542 - | hypothetical protein TERM 3213 2038734 - 2038709 - R 93 -10.5 -4.99035 | opp_overlap 2038709 CCATTCATACAAAAA CAGATGCCTCC TATT AGAGACATCTG TTCTAATTATTAAGC Aflv_2057 2041806 - 2038744 - | Type I site-specific restriction-modification system, R (restriction) subunit TERM 3214 2041656 - 2041640 - G 81 -10.9 -3.29511 | overlap 2041654 GGTATGGCCGGATAA GCCTTCT TTA AGAAGGC TTCCAACCGACCATA Aflv_2058 2043092 - 2041842 - | Restriction endonuclease S subunit Aflv_2059 2044636 - 2043089 - | Type I restriction-modification system methyltransferase subunit TERM 3215 2043519 - 2043501 - G 70 -3.9 -4.76802 | gap 1, opp_overlap 2043514 CTTAAAAAGAATAAA CAACATGG GATA CC-TGTTG TAAAGAACAGTTTTT Aflv_2060 2044962 - 2045840 + | Transposase and inactivated derivatives, IS5 family TERM 3216 2045818 - 2045860 + F 93 -11.3 -4.1964 | gap 1, opp_overlap 2045820 TGTATTCGCTTGTAA CACTCGG-GCTAGTTGAGCG CTAG CGCTCAACTAGCACCACGGG TTTTAAAATATTAAG TERM 3217 2045858 - 2045820 - f 100 -14.7 -3.01924 | gap 1, opp_overlap 2045818 TATTCGCTTGTAACA CTCGG-GCTAGTTGAGCG CTAG CGCTCAACTAGCACCACG GGTTTTAAAATATTA Aflv_2061 2045936 - 2047114 + | hypothetical protein TERM 3218 2047100 - 2047130 + F 91 -6.3 -5.48054 | gap 1, opp_overlap 2047099 2047102 TACATGTCACGTAAC TATTCAGC-CACAT GATC AAGTGAGCTGAATA TTTTTTGCTTTTCCT Aflv_2062 2047177 - 2048634 + | Transposase Aflv_2063 2048710 - 2049372 + | hypothetical protein TERM 3219 2049538 - 2049523 - T 70 -5.4 -4.40605 | opp_overlap 2049523 ATTTATAAATACAAA CAGGTC ATTA AACCTG CTTCCTTTTGAAAAA TERM 3220 2050298 - 2050260 - T 83 -11.9 -3.17462 | gap 1, opp_overlap 2050266 2050285, overlap 2050266 AATGACAACAGAAAT GAAAAATCCCTTGAAGCC TTAT GGCT-CAAGGGATTTCAC TTGATGATTCCGACT TERM 3221 2050266 - 2050292 + T 91 -11.7 -3.79445 | gap 1, opp_overlap 2050260 2050266, overlap 2050285 AACAGAAATGAAAAA TCCCTTGAAGCC TTAT GGCT-CAAGGGA TTTCACTTGATGATT TERM 3222 2050292 - 2050266 - T 100 -11.7 -5.08367 | gap 1, opp_overlap 2050266 2050285, overlap 2050260 AACAGAAATGAAAAA TCCCTTGAAGCC TTAT GGCT-CAAGGGA TTTCACTTGATGATT Aflv_2064 2051110 - 2050478 - | hypothetical protein Aflv_2065 2051228 - 2051764 + | HD superfamily hydrolase TERM 3223 2051785 - 2051765 - T 82 -11.2 -3.17054 | opp_overlap 2051757, overlap 2051758 GACCAAATTAGCTAA GGCTAGGT GTTAT ACCTAGCC TATACATACGATAAC Aflv_2066 2052924 - 2051785 - | Cystathionine beta-lyase Aflv_2067 2054031 - 2052928 - | Cystathionine gamma-synthase(O-succinylhomoserine (thiol)-lyase) TERM 3224 2053278 - 2053300 + g 100 -13.4 -3.14463 | CGTTTTGTTCGTGCT GACGCATGCG CAG CGCAAGCGTC TTCATGCCGCGAATT TERM 3225 2054083 - 2054056 - RH 100 -11.5 -5.40072 | opp_overlap 2054061, overlap 2054061 TCCTTTCTAAAAAAA TAAAAGCCTTC AAAGAA GAAGGCTTTTA CAGTCGCTTCTTCTT TERM 3226 2054061 - 2054078 + rH 73 -7 -4.15453 | opp_overlap 2054056 2054061 TCTAAAAAAATAAAA GCCTTC AAAGAA GAAGGC TTTTACAGTCGCTTC TERM 3227 2054078 - 2054061 - RH 100 -7 -5.55855 | opp_overlap 2054061, overlap 2054056 TCTAAAAAAATAAAA GCCTTC AAAGAA GAAGGC TTTTACAGTCGCTTC Aflv_2068 2054795 - 2054316 - | Mannose-6-phosphate isomerase TERM 3228 2054647 - 2054663 + gH 83 -9.5 -3.81929 | GTCCATATCGTCGTA CGAAACA TAT TGTTTCG TTTCGTCGCTTCTTC Aflv_2069 2054753 - 2055688 + | Dioxygenase mscL 2056022 - 2056417 + | Large-conductance mechanosensitive channel TERM 3229 2056417 - 2056435 + T 80 -11 -3.36289 | opp_overlap 2056413 2056412 AAAAGAAACACCGTA GCCCTCAA AGT TTGGGGGC TTCATTCGCATAATA TERM 3230 2056489 - 2056514 + T 91 -6.1 -5.43866 | opp_overlap 2056490, overlap 2056490 TTTTTCCGTAAAAAA ACCGTAAACCC ATGC GGATTTACGGC TTTTTTTACGCATTC TERM 3231 2056490 - 2056513 + T 83 -9.6 -3.85235 | opp_overlap 2056490, overlap 2056489 TTTTCCGTAAAAAAA CCGTAAACCC ATGC GGATTTACGG CTTTTTTTACGCATT TERM 3232 2056513 - 2056490 - T 100 -11.8 -5.40072 | opp_overlap 2056490 2056489 TTTTCCGTAAAAAAA CCGTAAACCC ATGC GGATTTACGG CTTTTTTTACGCATT Aflv_2071 2057035 - 2056520 - | Phosphatidylglycerophosphatase A-like protein TERM 3233 2057408 - 2057384 - g 78 -2.1 -5.53288 | gap 1, opp_overlap 2057390, overlap 2057386 CCGAACGGAAAAAAA CGGGA-AGCG TACATG CGCTTTCTCG CCAACGAACTCGTGC Aflv_2072 2057084 - 2057830 + | Enterochelin esterase-like enzyme Aflv_2073 2057869 - 2058402 + | 2'-5' RNA ligase TERM 3234 2058758 - 2058730 - g 74 -10.3 -2.72441 | opp_overlap 2058753, overlap 2058726 2058727 2058752 AAATGCACAAACCCA CGCCGAACCGTTT TAT AAACAGCTCGGCT ACGAAACGGTATCCG Aflv_2074 2058407 - 2058838 + | Acetyltransferase (GNAT) family TERM 3235 2058826 - 2058848 + F 100 -9.9 -5.29885 | opp_overlap 2058823 2058826 GATAAAAACAATCGA CATGCGATC ATAAC GGTCGCATG TTTTCTTTTTCCATT Aflv_2075 2058906 - 2059583 + | hypothetical protein TERM 3236 2059599 - 2059612 + F 95 -4.5 -5.79595 | opp_overlap 2059599 CGCTTTTTCAAAGAA CGATC TTGA GGTCG TTTTTTCTTTTGGGA Aflv_2076 2059662 - 2059796 + | hypothetical protein TERM 3237 2060142 - 2060154 + G 72 -7.7 -3.8917 | opp_overlap 2060141, overlap 2060145 GAAGCCGCTCAACAC GTGGA AGG TCCAC TTCTTGTGCTTGCGG TERM 3238 2060210 - 2060188 - g 79 -6.9 -4.66833 | overlap 2060189 2060203 CTGGAAGCGGAAAAA CGCGCACGT TAACG ACGCGCGCT GCCGCCATGATCGCA TERM 3239 2060209 - 2060189 - g 78 -10.4 -3.39618 | overlap 2060188 2060203 TGGAAGCGGAAAAAC GCGCACGT TAACG ACGCGCGC TGCCGCCATGATCGC TERM 3240 2061894 - 2061912 + G 74 -4.5 -4.87892 | opp_overlap 2061894 CGCCGCTTAAAAAAA GCAAACG CCTCC CGCTTGC TTTCTTTTCTTCAAA TERM 3241 2061912 - 2061894 - g 89 -6.7 -5.40072 | opp_overlap 2061894 CGCCGCTTAAAAAAA GCAAACG CCTCC CGCTTGC TTTCTTTTCTTCAAA Aflv_2077 2059800 - 2061950 + | ATP-dependent DNA helicase UvrD subfamily fused to unknown CXXC motif containing domain TERM 3242 2061965 - 2061928 - T 95 -13.7 -3.53012 | opp_overlap 2061933, overlap 2061933 TTTCTTTTCTTCAAA CAAAAGCGAAAAGCCTT GTCT AAGACTTTTCGCTTTTT TCTTATTTTTTGTTT TERM 3243 2061960 - 2061933 - T 100 -13.6 -4.86731 | opp_overlap 2061933, overlap 2061928 TTTCTTCAAACAAAA GCGAAAAGCCTT GTCT AAGACTTTTCGC TTTTTTCTTATTTTT TERM 3244 2061933 - 2061960 + T 100 -11.4 -5.80727 | opp_overlap 2061933 2061928 TTTCTTCAAACAAAA GCGAAAAGCCTT GTCT AAGACTTTTCGC TTTTTTCTTATTTTT Aflv_2078 2062222 - 2061968 - | hypothetical protein TERM 3245 2062099 - 2062113 + g 86 -5.6 -5.32699 | GAGCGACGCGCTTGA CGATGC CGC GCACCG TTTTTTCATCTTTAA TERM 3246 2062271 - 2062305 + r 80 -10.1 -3.71848 | opp_overlap 2062275, overlap 2062273 2062275 TATGAAAAACATAAA AAAACGTTCCAAAGG TATGC CCTTTGGAACGTCTC TTCTTAGTGAACGAA TERM 3247 2062273 - 2062303 + r 87 -12.7 -3.44284 | opp_overlap 2062275, overlap 2062271 2062275 TGAAAAACATAAAAA AACGTTCCAAAGG TATGC CCTTTGGAACGTC TCTTCTTAGTGAACG TERM 3248 2062275 - 2062301 + r 100 -15.3 -3.29142 | opp_overlap 2062275, overlap 2062273 2062271 AAAAACATAAAAAAA CGTTCCAAAGG TATGC CCTTTGGAACG TCTCTTCTTAGTGAA TERM 3249 2062301 - 2062275 - R 100 -15.3 -5.9667 | opp_overlap 2062273 2062271 2062275 AAAAACATAAAAAAA CGTTCCAAAGG TATGC CCTTTGGAACG TCTCTTCTTAGTGAA Aflv_2079 2062755 - 2062519 - | hypothetical protein Aflv_2080 2062843 - 2063160 + | Thioredoxin TERM 3250 2063146 - 2063176 + F 100 -16.4 -3.10245 | opp_overlap 2063150 2063153, overlap 2063150 GTCGAGGAGTTTCTG CAAACAATCAGCTA ATT TGGCTGATTGTTTG TATATATTGGGGTAA TERM 3251 2063172 - 2063150 - f 74 -9.2 -3.5393 | opp_overlap 2063146 2063150, overlap 2063153 AGGAGTTTCTGCAAA CAATCAGCTA ATT TGGCTGATTG TTTGTATATATTGGG TERM 3252 2063150 - 2063172 + F 93 -11.4 -4.21343 | opp_overlap 2063150 2063153, overlap 2063146 AGGAGTTTCTGCAAA CAATCAGCTA ATT TGGCTGATTG TTTGTATATATTGGG TERM 3253 2063285 - 2063264 - f 100 -8.8 -5.75538 | opp_overlap 2063268 GTCAAAAAATAAAAA GAGAGGAT TAAGTC ATCCTCTC TGAAATGGTAGCGAT TERM 3254 2063348 - 2063401 + F 70 -8.5 -3.27164 | opp_overlap 2063354 2063358, overlap 2063354 2063358 TGAGTGCAAACTACC TAGCAATAAATAACGTGTCGC TTGGTCTAGGGC GCGACAAGTTATTTATTACTA TTACCTTATGTCATC TERM 3255 2063855 - 2063845 - g 73 -5.4 -4.64676 | GGATTGTTAAGAAAA TACG GCA CGTA CGTTCAGTTGGATAC Aflv_2081 2063467 - 2064276 + | hypothetical protein TERM 3256 2064306 - 2064288 - T 90 -7.4 -5.32699 | opp_overlap 2064288 TTAAACACCAAAAAA GCCACG TACGTAC CGTGGC TTATGTTAAAAACGG Aflv_2082 2065164 - 2064307 - | hypothetical protein TERM 3257 2064420 - 2064456 + g 73 -2.9 -5.08601 | overlap 2064423 2064426 CGAATAGTTCAAAGT CCGCTTCTGCTTTTTTC ATC GAGGCAAGCAGTAGTTG TTTTTGTTGCGGTGC TERM 3258 2064423 - 2064453 + g 73 -5.4 -4.63592 | overlap 2064420 2064426 ATAGTTCAAAGTCCG CTTCTGCTTTTTTC ATC GAGGCAAGCAGTAG TTGTTTTTGTTGCGG Aflv_2083 2065373 - 2065167 - | hypothetical protein spoVAE 2065736 - 2065380 - | Stage V sporulation protein AE spoVAD 2066764 - 2065733 - | Stage V sporulation protein AD spoVAC 2067228 - 2066746 - | Stage V sporulation protein AC TERM 3259 2067021 - 2067038 + g 88 -6.9 -5.09225 | overlap 2067023 ATACCATCGTCGCCA CCGTCGG ATTG CCGACCG TTTTTTCCGTAAAGT Aflv_2087 2067786 - 2067241 - | Uncharacterized membrane protein TERM 3260 2067582 - 2067595 + gr 73 -6.7 -4.14615 | TTCTTTTCGCGCTTC CGTCA TGGC TGACG TTTGTGATGTTTTCT TERM 3261 2067747 - 2067727 - GR 89 -10.4 -3.93556 | ATTCATGTAACGAAA GGGCGTCC CGATT GGACACCC AAATGACTTATTGTT Aflv_2088 2067958 - 2067755 - | hypothetical protein TERM 3262 2067875 - 2067891 + gr 75 -8.7 -3.5774 | TGCCTTTTCATTTTC CGTTTGC AAG GCGAACG TTTCAAAACTTGCCT TERM 3263 2068042 - 2068025 - R 100 -7.7 -6.02914 | GTTATACAAAAAAAA TAGCCCC CGAA GGAGCTA ACGTTTATCGCGAAA Aflv_2089 2068231 - 2068040 - | hypothetical protein TERM 3264 2068339 - 2068352 + r 88 -3.8 -5.80951 | GTTGTTTGTGTTCCA CCGA GGACAA TCGG TTTTTTCTTTTCCAT Aflv_2090 2068746 - 2068438 - | hypothetical protein Aflv_2091 2068857 - 2069576 + | hypothetical protein TERM 3265 2069571 - 2069620 + F 89 -10.4 -4.15201 | gap 1, opp_overlap 2069586, overlap 2069586 GAAGTATTCCCAGCA CATTAATGAATGAAAGGCTGTTG TCGTT CAGCAGCCTTTT-TTTATTGATG TTTCCTTTCATTGCT TERM 3266 2069606 - 2069586 - f 71 -6.8 -4.01419 | opp_overlap 2069571 2069586 CATTAATGAATGAAA GGCTGTTG TCGTT CAGCAGCC TTTTTTTATTGATGT TERM 3267 2069586 - 2069606 + F 100 -9 -5.85737 | opp_overlap 2069586, overlap 2069571 CATTAATGAATGAAA GGCTGTTG TCGTT CAGCAGCC TTTTTTTATTGATGT Aflv_2092 2069666 - 2070343 + | hypothetical protein TERM 3268 2070328 - 2070375 + T 82 -7.8 -4.57837 | opp_overlap 2070337 2070341 2070344, overlap 2070332 2070337 2070344 2070368 ATCTTCTAATTATAT TGTTGTAAATAAATAAGCAGGC GTTT GCCCGCTTTTTTATTTGCTCCA TTTTTGGACAACTGT TERM 3269 2070332 - 2070371 + T 80 -11.6 -2.83903 | opp_overlap 2070337 2070341 2070344, overlap 2070328 2070337 2070344 2070368 TCTAATTATATTGTT GTAAATAAATAAGCAGGC GTTT GCCCGCTTTTTTATTTGC TCCATTTTTGGACAA TERM 3270 2070366 - 2070337 - T 79 -10.1 -3.55071 | opp_overlap 2070332 2070328 2070337 2070344, overlap 2070341 2070344 TTATATTGTTGTAAA TAAATAAGCAGGC GTTT GCCCGCTTTTTTA TTTGCTCCATTTTTG TERM 3271 2070337 - 2070366 + T 73 -7.9 -3.85891 | opp_overlap 2070337 2070341 2070344, overlap 2070332 2070328 2070344 TTATATTGTTGTAAA TAAATAAGCAGGC GTTT GCCCGCTTTTTTA TTTGCTCCATTTTTG TERM 3272 2070362 - 2070341 - T 74 -6.5 -4.41616 | opp_overlap 2070337 2070332 2070328 2070344, overlap 2070337 2070344 ATTGTTGTAAATAAA TAAGCAGGC GTTT GCCCGCTTT TTTATTTGCTCCATT TERM 3273 2070344 - 2070359 + T 95 -6 -5.68438 | opp_overlap 2070341 2070337 2070344, overlap 2070337 2070332 2070328 GTTGTAAATAAATAA GCAGGC GTTT GCCCGC TTTTTTATTTGCTCC TERM 3274 2070359 - 2070344 - T 80 -8.2 -4.32678 | opp_overlap 2070344 2070337 2070332 2070328, overlap 2070341 2070337 GTTGTAAATAAATAA GCAGGC GTTT GCCCGC TTTTTTATTTGCTCC Aflv_2093 2070696 - 2070364 - | hypothetical protein Aflv_2094 2070807 - 2071139 + | hypothetical protein TERM 3275 2071798 - 2071781 - g 77 -3.5 -5.1356 | TCTTAGCAACAAAAA TTTCATT TATA AACGAAA TGGCCCGCCTTTGTG Aflv_2095 2071153 - 2072418 + | Predicted UDP-glucose 6-dehydrogenase Aflv_2096 2072415 - 2073359 + | Nucleoside-diphosphate-sugar epimerase TERM 3276 2073404 - 2073389 - g 73 -5.4 -4.66163 | ATTTGTACCGAAAAA TTGCCG TCTC CAGCAA TAAAAGGGGGAGCCA TERM 3277 2074070 - 2074087 + G 74 -6.9 -4.26871 | TTTAGCGACAATCGG GCGAACG ATTA CGTACGC TTTCTTCATCAATTG Aflv_2097 2073359 - 2074495 + | Glycosyltransferase Aflv_2098 2074904 - 2074479 - | hypothetical protein TERM 3278 2074576 - 2074608 + g 100 -10.7 -5.10154 | ACGACTTTTTTCTTA TCGCACGTTTGAA CAATGCC TTCATACGTGCGA TTTTTCGTTTTCAAT TERM 3279 2074714 - 2074731 + g 73 -2.5 -5.22137 | overlap 2074716 AAATTCGCAAATGAC GGCGGCG GATA CGACGGC TTTTCTTTTCTCGTT Aflv_2099 2075817 - 2074918 - | hypothetical protein Aflv_2100 2076908 - 2075814 - | Uncharacterized membrane protein, probably permease TERM 3280 2076691 - 2076678 - G 95 -3.1 -6.13503 | TATCAATAAAAAAAA GCTTG TGAT CAAAC TAATAATCTTGAAGT Aflv_2101 2077314 - 2076895 - | hypothetical protein Aflv_2102 2078410 - 2077298 - | Transposase TERM 3281 2078487 - 2078457 - gR 91 -6.3 -5.48054 | gap 1, opp_overlap 2078456 2078459 AGGAAAAGCAAAAAA TATTCAGCTCACTT GATC ATGTG-GCTGAATA GTTACCTGCTAAACG TERM 3282 2078804 - 2078792 - gR 86 -7.7 -4.59773 | overlap 2078803 CTTCAGCCGTAAAAA GATCC AGA GGATC ATGAGGAAATACGGA TERM 3283 2079405 - 2079377 - gR 100 -9 -5.15969 | opp_overlap 2079377 GTGGAATTTAAAAAA GATGACCCCTAT TCAAT ATAGGAATCATC TTCTAGCTGCTTAAT Aflv_2103 2078352 - 2079419 + | Transposase TERM 3284 2079543 - 2079525 - TR 100 -4.7 -6.17184 | opp_overlap 2079537, overlap 2079537 ATTAGCAAAAAAAAA CAAAAAA TAAAG TTTTTTG GTTCATCACCAAAAG Aflv_2104 2080836 - 2079577 - | Transposase TERM 3285 2081434 - 2081424 - g 78 -5.4 -5.02074 | CCATTTGCCAAAAAA CGAA GCC TTCG TCACGGGCAACGCAC Aflv_2105 2081000 - 2082277 + | Transposase Aflv_2106 2082360 - 2083610 + | Permease of the major facilitator superfamily TERM 3286 2083636 - 2083659 + T 93 -11 -4.8622 | opp_overlap 2083636 CCTTTACTAAAAAAA GCTGTTCGGC AAAT GCCAAACAGC TTTTTGATTAGCGCG TERM 3287 2083659 - 2083636 - T 100 -13.2 -5.52384 | opp_overlap 2083636 CCTTTACTAAAAAAA GCTGTTCGGC AAAT GCCAAACAGC TTTTTGATTAGCGCG fabI 2084443 - 2083667 - | Enoyl-[acyl-carrier-protein] reductase (NADH) TERM 3288 2084532 - 2084511 - R 100 -8.1 -5.58179 | opp_overlap 2084511 GATTATAACAAAAAA TTCCCTACT TTCA AATAGGGAA TTTATAATAAATAGT Aflv_2108 2086009 - 2084534 - | Mg/Co/Ni transporter MgtE (contains CBS domain) TERM 3289 2085815 - 2085828 + g 73 -5.3 -4.69664 | opp_overlap 2085811 TTTTAAAAACTGTTT TCGAA ACGC TTCGA TTTTTCCATCATATA TERM 3290 2086786 - 2086798 + G 74 -4.8 -4.88293 | opp_overlap 2086786 CGTCTATTTACCAGA GTCG CATAC CGAC TTTATTTTTAGCATT rodA 2086013 - 2087131 + | Bacterial cell division membrane protein (maintenance of the rod shape and extension of the lateral walls of the cell) TERM 3291 2087126 - 2087162 + F 87 -8.7 -4.64766 | opp_overlap 2087129 2087131, overlap 2087131 ATGTTTTCTGCAGAA CAATAGGGGAGGTTAGA CTT TGTCACCTCCCCTGCTG TTTTTCACATGTCGC TERM 3292 2087131 - 2087157 + F 72 -9.4 -3.02233 | opp_overlap 2087129 2087131, overlap 2087126 TTCTGCAGAACAATA GGGGAGGTTAGA CTT TGTCACCTCCCC TGCTGTTTTTCACAT TERM 3293 2087157 - 2087131 - f 77 -9.4 -3.4811 | opp_overlap 2087131 2087126, overlap 2087129 TTCTGCAGAACAATA GGGGAGGTTAGA CTT TGTCACCTCCCC TGCTGTTTTTCACAT Aflv_2110 2087303 - 2088403 + | Uncharacterized protein containing C-terminal CHAP domain TERM 3294 2088513 - 2088489 - g 82 -3 -5.4833 | gap 1 GGATGCAATAAAAAA GAAATCC-CTA TGTA TAATGGATTTC CAATTCCTGAAGGGG TERM 3295 2088711 - 2088693 - g 88 -3 -5.87996 | opp_overlap 2088695, overlap 2088694 2088696 GAAGCAATAAAAAAA TTAGGCGA ATA TCGCCATA TATTCAGTAAAGATA TERM 3296 2088708 - 2088696 - g 75 -9.1 -3.60957 | opp_overlap 2088695, overlap 2088693 2088694 GCAATAAAAAAATTA GGCGA ATA TCGCC ATATATTCAGTAAAG Aflv_2111 2088429 - 2088812 + | hypothetical protein TERM 3297 2088813 - 2088837 + F 95 -12.1 -4.33819 | opp_overlap 2088810 CAAAAAAATGAGTAG TCCCCAGCGCG TAT TGCCCTGGGGA TTTGTTGTACATAAT TERM 3298 2089226 - 2089211 - g 88 -3.2 -5.77571 | overlap 2089212 ATGAAAAAACAAAAA CGCGCA TTCG TACGCA ATTTATGAAGCTGTA Aflv_2112 2088880 - 2089617 + | Serine/threonine protein phosphatase PP2A family TERM 3299 2089633 - 2089599 - T 86 -10 -4.08216 | opp_overlap 2089602, overlap 2089600 GTATGTCGCTGAAAA GTTTCGCCCGTTTGAT TAA AGCAAACGGGCGATAT CGTCAGGGAGCGGTG TERM 3300 2089632 - 2089600 - T 93 -13.5 -3.04715 | opp_overlap 2089602, overlap 2089599 TATGTCGCTGAAAAG TTTCGCCCGTTTGAT TAA AGCAAACGGGCGATA TCGTCAGGGAGCGGT TERM 3301 2089602 - 2089630 + T 100 -16.1 -2.78384 | opp_overlap 2089600 2089599 TGTCGCTGAAAAGTT TCGCCCGTTTGAT TAA AGCAAACGGGCGA TATCGTCAGGGAGCG Aflv_2113 2090492 - 2089614 - | Pseudouridylate synthase, 23S RNA-specific TERM 3302 2090084 - 2090116 + g 74 -7.8 -3.94811 | gap 2, overlap 2090086 CAAGCCCGGATGTAT CG-CGGT-CAAGTCGT GTG ACGACATGCACCGTCG TTTGTAACTGCTGTT TERM 3303 2090086 - 2090113 + g 71 -9.2 -3.03012 | gap 1, overlap 2090084 AGCCCGGATGTATCG CGGT-CAAGTCGT GTG ACGACATGCACCG TCGTTTGTAACTGCT Aflv_2114 2091296 - 2090505 - | NAD kinase TERM 3304 2091127 - 2091109 - G 76 -10.2 -2.92475 | opp_overlap 2091098, overlap 2091108 TGCACGCCGACAAAC GCCGTCTG TTC CAGCCGGC TGCGATAACGATGAA Aflv_2115 2091941 - 2091303 - | PpGpp synthetase catalytic domain TERM 3305 2091720 - 2091733 + g 70 -5.3 -4.54323 | CATCATGCGCAAGCC TGCAA TGTC TTGCA TTTGTTCTTCTAGTT Aflv_2116 2092361 - 2091954 - | hypothetical protein TERM 3306 2092602 - 2092592 - g 100 -8.2 -5.72254 | opp_overlap 2092591 2092592 TGAAACAACAAAAAA GCGC ATT GCGC ATTCGTTTCAAAAAC Aflv_2117 2092438 - 2093028 + | hypothetical protein TERM 3307 2093184 - 2093157 - g 100 -12.1 -3.84915 | opp_overlap 2093157 GAGACGAACGAAGAA GCGGAAACGAT GCGCCT ATCGCTTCCGC TTATGACAAACGAAG TERM 3308 2093157 - 2093184 + G 78 -10.6 -3.28712 | opp_overlap 2093157 GAGACGAACGAAGAA GCGGAAACGATG CGCC TATCGCTTCCGC TTATGACAAACGAAG TERM 3309 2093373 - 2093353 - g 71 -3.1 -4.93968 | ATCCACAAGCAAAAA GCCGCGTCG GAG CGATGGGAC TGATGCAGTTAATGC Aflv_2118 2093040 - 2093633 + | Soluble lytic murein transglycosylase Aflv_2119 2093690 - 2094094 + | Hemoglobin-like protein TERM 3310 2094396 - 2094407 + G 73 -5.8 -4.57073 | CTGCAAGGGCGTCAA GCGA GCAT TCGC TTTTTACGCCAACTA Aflv_2120 2094078 - 2094890 + | Predicted dithiol-disulfide isomerase TERM 3311 2094898 - 2094919 + F 100 -11.6 -5.40464 | opp_overlap 2094898 TCGGATAAAGAAAAA GGACTCGG GGGATG CCGAGTCC TTTTTCTTTGTCATA TERM 3312 2094919 - 2094898 - f 100 -11.6 -5.38054 | opp_overlap 2094898 TCGGATAAAGAAAAA GGACTCGG GGGATG CCGAGTCC TTTTTCTTTGTCATA Aflv_2121 2095050 - 2095295 + | hypothetical protein TERM 3313 2095300 - 2095321 + T 100 -11.6 -5.25803 | opp_overlap 2095300 GATTCCATTAAAAAA GAGGCGAC GCGATG GTCGCCTC TTTTTTATAGCAATT TERM 3314 2095321 - 2095300 - T 95 -11.6 -5.15634 | opp_overlap 2095300 GATTCCATTAAAAAA GAGGCGAC GCGATG GTCGCCTC TTTTTTATAGCAATT Aflv_2122 2097131 - 2095326 - | Oligoendopeptidase F Aflv_2123 2098383 - 2097160 - | Competence protein CoiA predicted endonuclease TERM 3315 2097898 - 2097883 - G 75 -3.3 -5.12707 | GGAAAGTTGAAAAAA CAAAC TGCGGC GTTTG ACATGAGATGTATGA TERM 3316 2098262 - 2098252 - G 82 -2.4 -5.70829 | AACAGGACAAAAAAA CGCC TGC GTCG CTCGCAATACATGTA Aflv_2124 2098647 - 2099822 + | Transposase TERM 3317 2100113 - 2100095 - g 71 -8.2 -3.54919 | AATTATTTTGGGAAA TGATGGAC GAA ATCCATCA AGAAGCAGAAATTTA mecA 2099965 - 2100630 + | Negative regulator of genetic competence, sporulation and motility TERM 3318 2100658 - 2100631 - f 88 -11.4 -3.47349 | opp_overlap 2100632, overlap 2100624 2100632 TTTCCAAACGCATAA CGCCGATTTCAA TTGA TTGAAATCGGCT TTTTTCTCGCGAGGT TERM 3319 2100657 - 2100632 - f 95 -14.9 -2.68088 | opp_overlap 2100632, overlap 2100631 2100624 TTCCAAACGCATAAC GCCGATTTCAA TTGA TTGAAATCGGC TTTTTTCTCGCGAGG TERM 3320 2100632 - 2100657 + F 100 -14.9 -5.24129 | opp_overlap 2100632 2100631 2100624 TTCCAAACGCATAAC GCCGATTTCAA TTGA TTGAAATCGGC TTTTTTCTCGCGAGG TERM 3321 2100966 - 2100946 - g 70 -2.5 -5.07053 | opp_overlap 2100946 AACTATCGCAAAAAA CGGCTATTT CGA AAAAAGGCG TTGCTTGATGAACAA TERM 3322 2101501 - 2101491 - g 73 -5.4 -4.67755 | ATATTTAGGGAAAAA CGAA TAT TTCG GCTTTTGGCGCGATA Aflv_2126 2100643 - 2102196 + | Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase TERM 3323 2102199 - 2102220 + T 91 -10.9 -4.44667 | opp_overlap 2102199 GCCGTTACTATAAAA GGCTTAGCG TTTA TGCTAAGCC TTTGTTGTTGACGAG TERM 3324 2102220 - 2102199 - T 90 -10.2 -4.46212 | opp_overlap 2102199 GCCGTTACTATAAAA GGCTTAGC GTTTAT GCTAAGCC TTTGTTGTTGACGAG Aflv_2127 2102619 - 2102209 - | Glutaredoxin family protein Aflv_2128 2102844 - 2103059 + | hypothetical protein TERM 3325 2103048 - 2103069 + T 100 -13.1 -5.40072 | opp_overlap 2103048 GTTGGTGGAAAAAAA GCTTCGAGA TAAA TCTCGAAGC TTTTTTTAAAAACAA TERM 3326 2103069 - 2103048 - T 100 -13.1 -5.40072 | opp_overlap 2103048 GTTGGTGGAAAAAAA GCTTCGAGA TAAA TCTCGAAGC TTTTTTTAAAAACAA TERM 3327 2103183 - 2103158 - T 100 -12.7 -5.53288 | opp_overlap 2103148 2103144 GTGAAGTGAAAAAAA GCTAATCCCTC GAAC GAGAGATTAGC TGTACATCGCTTTAT oppF 2104117 - 2103179 - | ABC-type oligopeptide transport system, ATPase component oppD 2105175 - 2104114 - | ABC-type oligopeptide transport system, ATPase component TERM 3328 2104139 - 2104155 + g 95 -8.1 -5.18357 | overlap 2104140 TTCCCTCCTTTGTTG TTCGTTA GTG TAACGAA TTTTTTCATCCGTTC oppC 2106203 - 2105193 - | ABC-type oligopeptide transport system, permease component oppB 2107141 - 2106203 - | ABC-type oligopeptide transport system, permease component TERM 3329 2107193 - 2107225 + r 93 -10.8 -4.72188 | opp_overlap 2107193 GACTAGCAGGCAAAA GGAGAGTATATG CTTGTCGCA CATATACTCTCC TTTCTTTTCGATTAC TERM 3330 2107225 - 2107193 - R 93 -11.5 -4.21908 | opp_overlap 2107193 GACTAGCAGGCAAAA GGAGAGTATATGC TTGTCGC ACATATACTCTCC TTTCTTTTCGATTAC dppE 2108928 - 2107237 - | ABC-type oligopeptide transport system, periplasmic component TERM 3331 2108928 - 2108947 + H 77 -9.4 -3.53012 | TTGTATTTATTTCCA TCTTCTGA TTTA TCAGAAGA TTTGAAACACAAGGA Aflv_2134 2109158 - 2109505 + | Uncharacterized membrane protein TERM 3332 2109752 - 2109779 + F 100 -7.1 -5.88565 | TAGGGTGGCACCACG GTTCTATCGTC CCTAAA GATGATAGGAC TTTTTTTATTGTCAA TERM 3333 2110188 - 2110212 + G 71 -4.9 -4.58773 | opp_overlap 2110190 GCTGGGTTGTTAACG TATCCGCCGCT TAT GGCAGCCGATA TTTTACTTTACTCGA trpS 2109816 - 2110805 + | Tryptophanyl-tRNA synthetase TERM 3334 2110810 - 2110830 + T 93 -9 -5.29385 | opp_overlap 2110810 AAAGACGATAAAAAA CTCAGCTC CATAA GGGCTGAG TTTTTTAATTCACTT TERM 3335 2110830 - 2110810 - T 93 -7.6 -5.38321 | gap 1, opp_overlap 2110810 AAAGACGATAAAAAA CTCAGCTCC ATAA GG-GCTGAG TTTTTTAATTCACTT Aflv_2136 2111575 - 2110835 - | hypothetical protein TERM 3336 2111339 - 2111365 + g 75 -5.1 -4.81551 | gap 1 ATAATCAAGTTGAAT GCGTTCGTG-GT TTTT GCGCACGTACGC TTTTTGATATACGTC Aflv_2137 2111858 - 2111652 - | hypothetical protein Aflv_2138 2112635 - 2111913 - | Predicted Zn-dependent protease TERM 3337 2112687 - 2112718 + r 76 -4.4 -5.03715 | opp_overlap 2112693, overlap 2112689 2112693 ACGAAAGGAAAATGT GAAAAAGGATGAGG CGAA CCTCATCCTTCATA TTTTTTGAAAATAAT TERM 3338 2112689 - 2112716 + r 73 -7 -4.14633 | opp_overlap 2112693, overlap 2112687 2112693 GAAAGGAAAATGTGA AAAAGGATGAGG CGAA CCTCATCCTTCA TATTTTTTGAAAATA TERM 3339 2112712 - 2112693 - R 100 -12.2 -4.7416 | opp_overlap 2112689 2112687 2112693 GGAAAATGTGAAAAA GGATGAGG CGAA CCTCATCC TTCATATTTTTTGAA TERM 3340 2112693 - 2112712 + r 89 -12.2 -3.66995 | opp_overlap 2112693, overlap 2112689 2112687 GGAAAATGTGAAAAA GGATGAGG CGAA CCTCATCC TTCATATTTTTTGAA fabF 2113951 - 2112707 - | 3-oxoacyl-(acyl-carrier-protein) synthase TERM 3341 2113928 - 2113938 + g 89 -6.8 -5.41143 | CCCTAATCCCGTGAC GACG ACT CGTC TTTTTTTCACCACTC fabHA 2114941 - 2113982 - | 3-oxoacyl-[acyl-carrier-protein] synthase III TERM 3342 2115020 - 2114998 - R 100 -5.6 -5.7946 | opp_overlap 2114998 CGTGCAATAAAAAAA TGAGGTGC TTACTCG ACACCTCA TTTACTCATTCGGCA med 2116005 - 2115022 - | Transcriptional activator protein Med TERM 3343 2115749 - 2115759 + g 73 -8.2 -3.66178 | overlap 2115741 TCTTTTACCGCTTGT GCCG CAG CGGC TTTCGAGTTGACCCC TERM 3344 2116065 - 2116048 - R 100 -7.7 -5.63517 | TTGGTAAAGAAAAAA TCCCCAC GGGT ATGGGGA CTATACGTCATTATA Aflv_2142 2116767 - 2116066 - | Alpha/beta superfamily hydrolase, probably inactivated Aflv_2143 2116907 - 2117086 + | hypothetical protein TERM 3345 2117103 - 2117091 - T 89 -10.5 -4.2704 | TCCATCATTAAGAAA GGCGC AAA GCGCC CCAATTTCGCCTAAA TERM 3346 2117142 - 2117120 - T 79 -11.2 -2.72461 | opp_overlap 2117136, overlap 2117119 2117123 CAATTTCGCCTAAAG GCAGCCCGCA TCC TGCGGGCAAC GGCGACATGTTGCCA TERM 3347 2117139 - 2117123 - T 91 -13.7 -2.64155 | opp_overlap 2117136, overlap 2117120 2117119 TTTCGCCTAAAGGCA GCCCGCA TCC TGCGGGC AACGGCGACATGTTG TERM 3348 2117276 - 2117333 + T 100 -15.5 -3.18681 | gap 1, opp_overlap 2117292, overlap 2117292 AAATTTGATGCTCTC TTATCTTGTAAAAAAAGGATAAACGG CATCCGT CCGTTTATCCTTTTTTTACAAC-TAA TTGATCGCCTTCGAC TERM 3349 2117292 - 2117318 + T 100 -11 -5.42259 | opp_overlap 2117292, overlap 2117276 TATCTTGTAAAAAAA GGATAAACGG CATCCGT CCGTTTATCC TTTTTTTACAACTAA TERM 3350 2117318 - 2117292 - T 100 -11 -5.41143 | opp_overlap 2117276 2117292 TATCTTGTAAAAAAA GGATAAACGG CATCCGT CCGTTTATCC TTTTTTTACAACTAA clpC 2119895 - 2117313 - | Class III stress response-related ATPase TERM 3351 2118115 - 2118096 - G 75 -5.7 -4.72007 | opp_overlap 2118097 2118100, overlap 2118100 CCCGAGGAAAAGAAA CGAACCG ATCGGA CGATTCG GGTCTTTCATGCCTG TERM 3352 2118368 - 2118401 + g 76 -6.7 -4.47183 | gap 1 TCAATTGCTTTTCAA GCTGCGGAA-TGCGTC CGT GACGAAGTTCTGCTGC TTTATTTAAATCGTA TERM 3353 2119077 - 2119087 + g 88 -6.8 -5.20222 | opp_overlap 2119076 2119077 AATAAATAAAATGAT GCGA CCT TCGC TTTTCTTTATTTCAT TERM 3354 2119983 - 2119954 - R 80 -11.5 -2.86747 | opp_overlap 2119953 2119952, overlap 2119958 TACGTATTATAACGA GAAAGCCACCCTT ATGC AAGGATGGCTTAC GGTTTTGGAAAGTAC TERM 3355 2119979 - 2119958 - R 88 -10.9 -4.11281 | opp_overlap 2119953 2119952, overlap 2119954 TATTATAACGAGAAA GCCACCCTT ATGC AAGGATGGC TTACGGTTTTGGAAA Aflv_2145 2120159 - 2119980 - | hypothetical protein argF 2121193 - 2120249 - | Ornithine carbamoyltransferase carB 2124294 - 2121190 - | Carbamoylphosphate synthase large subunit TERM 3356 2123799 - 2123810 + g 75 -5.8 -4.66535 | CCGGACGGACGATGA TCGG AAAC CCGA TTTGTTTTGCGAATT carA 2125354 - 2124287 - | Carbamoyl-phosphate transferase-arginine (subunit A) TERM 3357 2125312 - 2125328 + g 70 -5.1 -4.45083 | CCGTTTCTAAATTGC CGACAAA CGT TTTGCCG TTTTGTAAATGTAAA TERM 3358 2125401 - 2125390 - R 75 -3 -5.33405 | opp_overlap 2125390, overlap 2125384 TTTATTAAACAAAAA GAAT TTTT ATTC ATTTATGCGTATAAA argD 2126597 - 2125404 - | Ornithine/acetylornithine aminotransferase argB 2127316 - 2126558 - | Acetylglutamate kinase argJ 2128555 - 2127329 - | N-acetylglutamate synthase (N-acetylornithine aminotransferase) TERM 3359 2127731 - 2127766 + g 74 -9.8 -3.18429 | overlap 2127732 ACCGTCGCGTGCAAT TTGCTTCGCTAAATGT TCAC ACGTTTGGCGAAGCGC TTCATAAAAGTTTTC TERM 3360 2127732 - 2127765 + g 91 -13.3 -2.50575 | overlap 2127731 CCGTCGCGTGCAATT TGCTTCGCTAAATGT TCAC ACGTTTGGCGAAGCG CTTCATAAAAGTTTT argC 2129610 - 2128570 - | Acetylglutamate semialdehyde dehydrogenase TERM 3361 2129250 - 2129261 + g 89 -3.6 -5.63504 | overlap 2129246 GCTTAAGAGCGGCCT CGCT CGGT GGCG TTTTTTTATACCATT fnr 2129769 - 2130452 + | Transcriptional regulator, Crp family TERM 3362 2130491 - 2130443 - T 100 -22.9 -3.16743 | opp_overlap 2130443 2130450 2130454, overlap 2130434 2130450 2130454 2130478 AATCGACATATGCAA TATGAAATAAACGGGTGTCCTAA AAA TGAAGACACCCGTTTATTTCATA TTAATAAACGATCAT TERM 3363 2130443 - 2130491 + T 100 -20.7 -3.1505 | opp_overlap 2130434 2130443 2130450 2130454 2130478, overlap 2130450 2130454 AATCGACATATGCAA TATGAAATAAACGGGTGTCCTAA AAA TGAAGACACCCGTTTATTTCATA TTAATAAACGATCAT TERM 3364 2130484 - 2130450 - T 100 -15.2 -3.94184 | opp_overlap 2130443 2130450 2130454, overlap 2130443 2130454 2130478 ATATGCAATATGAAA TAAACGGGTGTCCTAA AAA TGAAGACACCCGTTTA TTTCATATTAATAAA TERM 3365 2130450 - 2130484 + T 100 -13 -3.95022 | opp_overlap 2130450 2130443 2130454 2130478, overlap 2130443 2130454 ATATGCAATATGAAA TAAACGGGTGTCCTAA AAA TGAAGACACCCGTTTA TTTCATATTAATAAA TERM 3366 2130480 - 2130454 - T 93 -11.6 -4.56883 | opp_overlap 2130450 2130443 2130454, overlap 2130450 2130443 2130478 GCAATATGAAATAAA CGGGTGTCCTAA AAA TGAAGACACCCG TTTATTTCATATTAA TERM 3367 2130454 - 2130480 + T 91 -9.4 -4.56883 | opp_overlap 2130454 2130450 2130443 2130478, overlap 2130450 2130443 GCAATATGAAATAAA CGGGTGTCCTAA AAA TGAAGACACCCG TTTATTTCATATTAA Aflv_2154 2131199 - 2130492 - | hypothetical protein TERM 3368 2131246 - 2131261 + r 93 -5.4 -5.65177 | overlap 2131247 TCCTCCTTTTTTCAT TGTGAC GTCT GTCACG TTTTTTTATAAATGT TERM 3369 2131247 - 2131260 + r 71 -6.7 -3.9748 | overlap 2131246 CCTCCTTTTTTCATT GTGAC GTCT GTCAC GTTTTTTTATAAATG Aflv_2155 2132052 - 2131267 - | Hydrolase of the alpha/beta superfamily Aflv_2156 2132131 - 2132937 + | Predicted hydrolase of the HAD superfamily Aflv_2157 2132967 - 2133179 + | hypothetical protein Aflv_2158 2133181 - 2133354 + | hypothetical protein TERM 3370 2133376 - 2133358 - T 100 -16 -4.65838 | opp_overlap 2133358 GATACATTGTAAAAA GCTGCGCG TCA CGCGCAGC TTTAATCTTTTCGGA TERM 3371 2133358 - 2133376 + T 100 -16 -4.07678 | opp_overlap 2133358 GATACATTGTAAAAA GCTGCGCG TCA CGCGCAGC TTTAATCTTTTCGGA Aflv_2159 2134238 - 2133378 - | hypothetical protein Aflv_2160 2134239 - 2135162 + | hypothetical protein TERM 3372 2135283 - 2135269 - g 85 -4.2 -5.42259 | overlap 2135270 2135271 GGAGCGCGAAAAAAA CCGCCA AGC TGGCAA ACGCGCCTATTCGAA Aflv_2161 2135159 - 2135317 + | hypothetical protein TERM 3373 2135407 - 2135437 + T 88 -4 -5.74086 | opp_overlap 2135409, overlap 2135403 2135409 TATATAGGTATGACA AAGGGTGTCC TGTTACTTTTT GGACACCCTC TTTTTTATTTCATTT TERM 3374 2135409 - 2135435 + T 76 -6.6 -4.47052 | opp_overlap 2135409, overlap 2135403 2135407 TATAGGTATGACAAA GGGTGTCC TGTTACTTTTT GGACACCC TCTTTTTTATTTCAT TERM 3375 2135435 - 2135409 - T 71 -6.6 -3.98661 | opp_overlap 2135403 2135409 2135407 TATAGGTATGACAAA GGGTGTCC TGTTACTTTTT GGACACCC TCTTTTTTATTTCAT mcpC 2137094 - 2135442 - | Methyl-accepting chemotaxis protein TERM 3376 2137114 - 2137130 + r 85 -5.8 -5.34381 | TCCCTCCTTTATTGT GCGATG CCGTT CGTCGC TTTTTCTTTCCATTT Aflv_2163 2138072 - 2137107 - | Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein TERM 3377 2137148 - 2137160 + g 72 -7.7 -3.80733 | TTTCTTTCCATTTTT CAAGC GTT GCTTG TTGTTCTGGAGTGAA TERM 3378 2137191 - 2137209 + g 77 -4.5 -5.07652 | TGTCACAACGCGAAT CGGTGCT AAATC AACACCG TTTTCTTTTAAGCCG TERM 3379 2138370 - 2138359 - g 70 -5.8 -4.33165 | TTAAAGGGAGCAAAA GCGA CATT TCGC TTGAAAAAGATGAGC Aflv_2164 2138232 - 2138732 + | hypothetical protein TERM 3380 2138733 - 2138749 + F 100 -8 -5.56263 | GTCAACTACCGTTAA GAAGGC GCGCA GCCTTC TTTTTCTTTTCTAAT TERM 3381 2138937 - 2138958 + F 100 -9.5 -5.37593 | opp_overlap 2138922 2138919, overlap 2138922 GAAGGAGCGCGTTAC GTCTTCTTC TTAT GAGGAAGAC TTTTTTACTTTAAAC TERM 3382 2139498 - 2139472 - gf 76 -7.2 -4.15044 | overlap 2139473 TCGCGCGCCAAGAAA CGACGTTGCCGA TCA TCGCCCACGTCA CATTGCACGACATTG TERM 3383 2140044 - 2140029 - gf 85 -9 -4.2018 | AAAGCGTTAAAAGAA GCGCAT ATTG ATGCGC TAACGCTCGCCGACA TERM 3384 2140376 - 2140366 - gf 85 -5.4 -5.24129 | CGCTCGGACAAAAAA CGAA CTT TTCG ATTGCCGCTGCCTTT Aflv_2165 2138988 - 2140841 + | 5,10-methylenetetrahydrofolate reductase containing methyltransferase and reductase domains TERM 3385 2141447 - 2141457 + GT 93 -5.4 -5.67283 | opp_overlap 2141432 2141447, overlap 2141431 CGCTTGCCGGGCAAA CGAT TGA ATCG TTTTTTATTTCCGTT TERM 3386 2142308 - 2142292 - gT 71 -6.5 -4.16016 | overlap 2142294 TTACTCGTCAACAAA TACGGCG TCT CACCGCA CGACATCATTTTCGA TERM 3387 2143935 - 2143905 - gT 81 -11.3 -2.74605 | gap 1, overlap 2143902 2143901 GTTTTTGAAAAGCCA CGCCA-TTCAAGCG TTAG CGCTTGAACTAGCG GAAGGATTGGCGGAA Aflv_2166 2140795 - 2144223 + | Methionine synthase I containing methyltransferase and cobalamin-binding domains TERM 3388 2144213 - 2144259 + T 100 -13.3 -4.09117 | gap 1, opp_overlap 2144228, overlap 2144214 2144216 2144228 AAGCAAGATACTTTA ACG-TGTTGTGAAAAAGCTGAC TTTA GTCAGCTTTTTCACAACATCCA TTCTTTATAAATCAA TERM 3389 2144214 - 2144258 + T 100 -16.8 -3.04988 | gap 1, opp_overlap 2144228, overlap 2144213 2144216 2144228 AGCAAGATACTTTAA CG-TGTTGTGAAAAAGCTGAC TTTA GTCAGCTTTTTCACAACATCC ATTCTTTATAAATCA TERM 3390 2144216 - 2144255 + T 100 -24 -2.73799 | opp_overlap 2144228, overlap 2144214 2144213 2144228 CAAGATACTTTAACG TGTTGTGAAAAAGCTGAC TTTA GTCAGCTTTTTCACAACA TCCATTCTTTATAAA TERM 3391 2144243 - 2144228 - T 88 -9 -4.56775 | opp_overlap 2144216 2144214 2144213 2144228 ACGTGTTGTGAAAAA GCTGAC TTTA GTCAGC TTTTTCACAACATCC TERM 3392 2144228 - 2144243 + T 88 -9 -4.57569 | opp_overlap 2144228, overlap 2144216 2144214 2144213 ACGTGTTGTGAAAAA GCTGAC TTTA GTCAGC TTTTTCACAACATCC Aflv_2167 2144800 - 2144264 - | ATP:corrinoid adenosyltransferase TERM 3393 2144734 - 2144748 + g 85 -5.6 -5.10154 | opp_overlap 2144733 2144734 CCCGAACAGCAAGAC CGACCG CTG CAGTCG TTTTTCCTTTTCCGT Aflv_2168 2145603 - 2144779 - | Uroporphyrinogen-III methylase TERM 3394 2145157 - 2145142 - GR 73 -10.4 -2.5547 | overlap 2145141 ATGCGTCACAGGAAT GCCAGC GTAC GCTGGC GCAGCCACACCAGCT Aflv_2169 2146555 - 2145521 - | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase TERM 3395 2146474 - 2146494 + gr 71 -8.3 -3.41134 | opp_overlap 2146479, overlap 2146479 ATTCCTCAAGACGCC CAAGACTGC CAC GCGGTTTTG TTAATTGGTCAATAT TERM 3396 2146479 - 2146489 + gr 74 -4.6 -4.80178 | opp_overlap 2146479, overlap 2146474 TCAAGACGCCCAAGA CTGC CAC GCGG TTTTGTTAATTGGTC Aflv_2170 2148050 - 2146536 - | Cobyric acid synthase TERM 3397 2147579 - 2147593 + g 73 -10 -3.04322 | CCGGAGCATTCGCCA TGCGTG CTA CACGCA TATTCACAAGTTCGC TERM 3398 2148035 - 2148051 + g 73 -3.6 -5.05782 | CTTGAAACATAATCG GAAGCG CCCTA CGCATC TTTTTTCACCTCGCT Aflv_2171 2149416 - 2148043 - | Cobyrinic acid a,c-diamide synthase Aflv_2172 2150555 - 2149398 - | Cobalamin biosynthesis protein CbiG Aflv_2173 2151246 - 2150479 - | Precorrin-4 methylase Aflv_2174 2151962 - 2151243 - | Precorrin-2 methylase Aflv_2175 2153146 - 2151941 - | Precorrin-3B methylase CobJ fused to precorrin-6B methylase 2 CobL Aflv_2176 2154224 - 2153112 - | Cobalamin biosynthesis protein CbiD TERM 3399 2153439 - 2153429 - GR 71 -8.2 -3.48342 | opp_overlap 2153428 AATGAACCATCATAA CGCC TTG GGCG ACTTTCGAAAATTTT Aflv_2177 2154859 - 2154227 - | Precorrin isomerase Aflv_2178 2155717 - 2154860 - | Precorrin-6x reductase Aflv_2179 2156492 - 2155650 - | Sirohydrochlorin cobaltochelatase (CbiXL) TERM 3400 2155994 - 2156029 + gr 100 -13.6 -4.38712 | opp_overlap 2155994 2156026 ACGCTGGCTCAACGA TTGCTTGTTTGTTTTG TTCC CAAAATAAACGAGCAA TTTTATACAAATCGC Aflv_2180 2158027 - 2156480 - | Precorrin-3B methylase CobJ fused to 4Fe-4S reductase domain TERM 3401 2157065 - 2157075 + g 78 -5.4 -4.99043 | GTCTATCATTTGTTT CGTT GTT AACG TTTTATTTGTCACCC Aflv_2181 2158802 - 2158005 - | ABC-type cobalt transport system, ATPase component Aflv_2182 2159478 - 2158756 - | ABC-type cobalt transport system, permease component Aflv_2183 2159740 - 2159471 - | ABC-type cobalt transport system, periplasmic component Aflv_2184 2160489 - 2159737 - | ABC-type cobalt transport system, permease component cbiW 2160857 - 2160486 - | 2Fe-2S ferredoxin TERM 3402 2160899 - 2160880 - R 100 -12.2 -5.79595 | TTTCAAAATAAAAAA GCACCTCT AGGC AGAGGTGC AGAAAAAACGAAAGA TERM 3403 2161272 - 2161251 - R 100 -12.3 -5.64274 | opp_overlap 2161251 2161250 CCATTTACAAAAAAA GCGCCCTCT ATTG AGAAGGCGC CTTGTAGTAATCGCA TERM 3404 2161251 - 2161272 + r 72 -10.1 -2.66216 | opp_overlap 2161251, overlap 2161250 CCATTTACAAAAAAA GCGCCCTCT ATTG AGAAGGCGC CTTGTAGTAATCGCA ccpA 2162292 - 2161258 - | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) Aflv_2187 2164658 - 2162310 - | Alpha-glucosidase, family 31 of glycosyl hydrolase TERM 3405 2162404 - 2162394 - G 71 -6.8 -4.17556 | TACATCGCCAACAAA TGCG ACA CGCA ATGGCCAAGGTGGTT TERM 3406 2163690 - 2163710 + g 76 -2.6 -5.26918 | gap 1, overlap 2163693 CGCATATTGAACGAG CGATT-CCG GACG TGGAAATCG TTTTTTGTCAAATGT TERM 3407 2164525 - 2164536 + g 71 -4.4 -4.75776 | opp_overlap 2164525 TTCTCGCATGTAAAT GCAA ATAT TTGC TTTTTCCCTTCAATT Aflv_2188 2166172 - 2164655 - | Alpha-amylase domain TERM 3408 2165789 - 2165800 + g 70 -7.2 -3.90744 | overlap 2165788 AATGACTTTCATATC GCGC TTAT GCGC TTCTTTCACAAGCCG TERM 3409 2166232 - 2166266 + r 90 -11.6 -4.05816 | opp_overlap 2166233 2166237, overlap 2166233 2166237 2166242 TATCTCTAAATAGTA AGAAAGGAAAGAACCA AAA TGATTCTTTCCTTTCG TTTCTCATCCTTTTG TERM 3410 2166265 - 2166233 - R 100 -17.3 -3.45839 | opp_overlap 2166232 2166233 2166237 2166242, overlap 2166237 ATCTCTAAATAGTAA GAAAGGAAAGAACCA AAA TGATTCTTTCCTTTC GTTTCTCATCCTTTT TERM 3411 2166233 - 2166265 + r 100 -15.1 -3.02405 | opp_overlap 2166233 2166237, overlap 2166232 2166237 2166242 ATCTCTAAATAGTAA GAAAGGAAAGAACCA AAA TGATTCTTTCCTTTC GTTTCTCATCCTTTT TERM 3412 2166261 - 2166237 - R 100 -12.3 -4.36433 | opp_overlap 2166233 2166232 2166237 2166242, overlap 2166233 CTAAATAGTAAGAAA GGAAAGAACCA AAA TGATTCTTTCC TTTCGTTTCTCATCC TERM 3413 2166237 - 2166261 + r 89 -10.1 -4.16182 | opp_overlap 2166237 2166233, overlap 2166233 2166232 2166242 CTAAATAGTAAGAAA GGAAAGAACCA AAA TGATTCTTTCC TTTCGTTTCTCATCC Aflv_2189 2167113 - 2166271 - | ABC-type maltose/maltodextrin transport system, permease component Aflv_2190 2168437 - 2167115 - | ABC-type maltose/maltodextrin transport system, permease component TERM 3414 2168304 - 2168291 - G 91 -3.9 -5.80951 | AGCTAAAATAAAAAA TGAAA TACC TTTCA CGTATTGACGATTAT TERM 3415 2168509 - 2168466 - R 85 -5.6 -5.24515 | gap 3, opp_overlap 2168471 2168472 2168476, overlap 2168470 2168471 2168472 2168479 AATAAACAAAGAAAA GAAAGTTGAAGCAGTACCTCT ACAAG AGAGGTACCGCT-C-ACT-TC TTACTTGCTTGGATG TERM 3416 2168506 - 2168470 - R 86 -7.5 -5.02645 | gap 2, opp_overlap 2168471 2168472 2168476, overlap 2168466 2168471 2168472 2168479 AACAAAGAAAAGAAA GTTGAAGCAGTACCTCT ACAAG AGAGGTACCGCT-C-AC TTCTTACTTGCTTGG TERM 3417 2168505 - 2168472 - R 79 -11.2 -2.72316 | gap 1, opp_overlap 2168472 2168471 2168476, overlap 2168470 2168471 2168466 2168479 CAAAGAAAAGAAAGT TGAAGCAGTACCTCT ACAAG AGAGGTACCGCT-CA CTTCTTACTTGCTTG TERM 3418 2168476 - 2168502 + r 76 -10.9 -2.68886 | opp_overlap 2168472 2168470 2168471 2168466 2168479, overlap 2168472 2168471 GAAAAGAAAGTTGAA GCAGTACCTCT ACAAG AGAGGTACCGC TCACTTCTTACTTGC TERM 3419 2168499 - 2168479 - R 71 -9.8 -2.78395 | opp_overlap 2168476 2168472 2168471, overlap 2168472 2168470 2168471 2168466 AAGAAAGTTGAAGCA GTACCTCT ACAAG AGAGGTAC CGCTCACTTCTTACT Aflv_2191 2169964 - 2168510 - | ABC-type maltose/maltodextrin transport system, periplasmic component TERM 3420 2170055 - 2170040 - H 86 -9 -4.39002 | AAACTTGTGAGAAAA GCGCAA TCGA TTGCGC TTGAAATAGAAAGGA TERM 3421 2170262 - 2170282 + G 71 -6.9 -4.11412 | opp_overlap 2170250 2170262 AAACAACCGATGCAA CAAAGCG GTTGTGA CGCTTTG TTTGATTATTGGTTC TERM 3422 2170568 - 2170551 - g 71 -9.1 -3.37283 | overlap 2170549 TAAATCCGCCAAATA CGCTCCC ATGG GGAAGCG TTGACCCAACAACAA Aflv_2192 2170082 - 2171845 + | Cyclomaltodextrinase Aflv_2193 2172677 - 2171829 - | AraC-type DNA-binding domain-containing protein TERM 3423 2171935 - 2171966 + g 100 -5.1 -6.07627 | opp_overlap 2171936, overlap 2171936 2171938 CCGACTTGTTTAGCA ATGGCCGCGAC CGTCTCATTC GTCGCGGCTAA TTTTTTTTTCGCCAT TERM 3424 2171936 - 2171965 + g 79 -8.6 -4.22949 | opp_overlap 2171936, overlap 2171935 2171938 CGACTTGTTTAGCAA TGGCCGCGAC CGTCTCATTC GTCGCGGCTA ATTTTTTTTTCGCCA TERM 3425 2171938 - 2171963 + g 75 -9 -3.6979 | opp_overlap 2171936, overlap 2171936 2171935 ACTTGTTTAGCAATG GCCGCGAC CGTCTCATTC GTCGCGGC TAATTTTTTTTTCGC TERM 3426 2173056 - 2173034 - g 78 -5.6 -4.84363 | gap 1, opp_overlap 2173034 2173048 GCAAATGATGAAAAA GCAGCTTCC TATATT GGA-GCTGC TTCCATTTGGGCAAA Aflv_2194 2172791 - 2174143 + | Na+-driven multidrug efflux pump Aflv_2195 2175587 - 2174121 - | Phytoene dehydrogenase (Phytoene desaturase) TERM 3427 2174193 - 2174215 + g 86 -12 -3.14211 | opp_overlap 2174183 AATCACCACCATCGG CGATCCACCT CCA GGGTGGGTCG TTCCTCCGACGAAAT Aflv_2196 2176663 - 2175563 - | Glycosyl transferase, family 2 TERM 3428 2176065 - 2176050 - G 75 -5.4 -4.85782 | gap 1, opp_overlap 2176053 2176058 2176059, overlap 2176053 CGCTCGAAAAACAAA CATGCGC CGT GCGC-TG CTGTTGTTGCGCGCA Aflv_2197 2177322 - 2176642 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 3429 2176887 - 2176857 - G 71 -8.2 -3.42658 | overlap 2176852 TATGATAAAACGCAA GCGGTACGATCG GCACATT CGCTCGTTCCGC TACATATATAGCCCC Aflv_2198 2178047 - 2177304 - | hypothetical protein Aflv_2199 2178876 - 2178019 - | Phytoene/squalene synthetase Aflv_2200 2180294 - 2178873 - | Phytoene dehydrogenase (Phytoene desaturase) TERM 3430 2180182 - 2180199 + g 81 -4 -5.41143 | overlap 2180184 TCTATAAACGAAAGT CGCCCG CCAAGC CGGTCG TTTTTTTCAAAAATC Aflv_2201 2181835 - 2180294 - | Phytoene dehydrogenase (Phytoene desaturase) TERM 3431 2181698 - 2181715 + g 86 -2.6 -5.78622 | CTCAAACCGTCCATT CCGTCC ACCTAC GTACGG TTTTTTTTCAAATAC TERM 3432 2181858 - 2181838 - R 71 -4.1 -4.93877 | TCCTATTAAACAAAA GTTATACAA ATA TTATACAAC AGAACAAGAAAAGAG TERM 3433 2181885 - 2181904 + r 71 -6.4 -4.20932 | opp_overlap 2181885 AGAGAAAAGAAAAAA GACAGCGA TGTT TAGCTGTC TTTTAAATGAATATT TERM 3434 2181904 - 2181885 - R 100 -6.4 -5.8901 | opp_overlap 2181885 AGAGAAAAGAAAAAA GACAGCGA TGTT TAGCTGTC TTTTAAATGAATATT asnO 2183785 - 2181896 - | Asparagine synthase (glutamine-hydrolyzing) TERM 3435 2183533 - 2183543 + g 78 -2.4 -5.46657 | TATAACAAATCGTAT AGGC GTG GCCG TTTTTTATTCGCGTC TERM 3436 2183775 - 2183787 + g 78 -4.1 -5.19275 | TTCTGTTGTGAACAA GTATG AAG CATGC TTTTATTTTATGCAT TERM 3437 2184108 - 2184094 - g 82 -5.6 -5.07567 | overlap 2184084 CTATACGTTAAAAAA CGGTGA CCG TCTCCG CTACATGAAACCGTT Aflv_2203 2183873 - 2184394 + | hypothetical protein Aflv_2204 2186331 - 2184388 - | Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) TERM 3438 2185625 - 2185641 + g 79 -8.1 -4.30978 | TCGTTAATGGCTTGT TTTACGA TGT TCGTAAA TTTTAATCGGTTCGG TERM 3439 2186444 - 2186427 - R 100 -7 -5.93252 | opp_overlap 2186427 TGGAAAAAGAAAAAA GTTGGC GCATAT GCCAAC TTTACGAAAAGAATG Aflv_2205 2186802 - 2186446 - | hypothetical protein TERM 3440 2187897 - 2187868 - g 71 -2 -5.19328 | opp_overlap 2187868, overlap 2187862 ATCGTAGAAGAAAAA TTGCCAGAGCGC TCGTTT GAGCTCGGTCAA TATTTCCAAGAAAAA TERM 3441 2188065 - 2188039 - g 70 -8.1 -3.68351 | opp_overlap 2188043, overlap 2188043 2188047 GGGCTATTATGTAAA GAAACGCATGA TACGG TCATCCGTTTC GCTCCGCCGCTCGTC rocD 2186899 - 2188140 + | Ornithine aminotransferase TERM 3442 2188174 - 2188126 - T 75 -2.9 -5.30575 | gap 3, opp_overlap 2188138 2188144, overlap 2188137 2188144 2188171 GAAAAAGTGAAAAAA GTATTTGAACAGTAAAAAGCTGGG ATAT CCCAGCTTTTTA-T-TT-AACTAC ATTCCGTAGCGTGCC TERM 3443 2188166 - 2188137 - T 84 -12.3 -3.09131 | opp_overlap 2188138 2188144, overlap 2188126 2188144 AAAAGTATTTGAACA GTAAAAAGCTGGG ATAT CCCAGCTTTTTAT TTAACTACATTCCGT TERM 3444 2188138 - 2188165 + T 100 -15.8 -3.68619 | opp_overlap 2188137 2188126 2188144, overlap 2188144 AAAGTATTTGAACAG TAAAAAGCTGGG ATAT CCCAGCTTTTTA TTTAACTACATTCCG TERM 3445 2188159 - 2188144 - T 93 -10.4 -4.87626 | opp_overlap 2188138 2188144, overlap 2188137 2188126 TTTGAACAGTAAAAA GCTGGG ATAT CCCAGC TTTTTATTTAACTAC TERM 3446 2188144 - 2188159 + T 100 -10.4 -5.30616 | opp_overlap 2188144 2188137 2188126, overlap 2188138 TTTGAACAGTAAAAA GCTGGG ATAT CCCAGC TTTTTATTTAACTAC Aflv_2207 2189026 - 2188163 - | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) TERM 3447 2188581 - 2188594 + g 78 -2.4 -5.44721 | AGCGCCTGTTCTTTC GGAA TCGCCT TTCC TTTTTTTCCGATGAT TERM 3448 2189008 - 2188991 - G 72 -7.7 -3.90729 | gap 1 AACAACCCCGACAAA CACGTCCG ATC CGG-CGTG CGCTGTAACAAATTT Aflv_2208 2189258 - 2189392 + | hypothetical protein TERM 3449 2189385 - 2189405 + T 100 -9.8 -5.43553 | opp_overlap 2189377 AAGACAAGCCGTGTA CGACATGA TGCAT TCATGTCG TTTTCTTTTTTCCAT Aflv_2209 2190507 - 2189398 - | Predicted membrane protein Aflv_2210 2191821 - 2190661 - | Transposase TERM 3450 2190913 - 2190899 - G 74 -4.3 -4.94992 | TGAAACGTATAAAAA CATTG TTCTG CAATG GATTTAGCCAAATGG Aflv_2211 2192414 - 2191818 - | Predicted site-specific integrase/resolvase (IS transposase ) TERM 3451 2191936 - 2191954 + g 71 -4.6 -4.60889 | TGCGGTGACAATTTC TCGTTGTT GAT GACAATGA TTTTTACACCTAATT TERM 3452 2192528 - 2192502 - H 90 -7.3 -5.28942 | gap 1, opp_overlap 2192504, overlap 2192504 CACCGTAAAGAAAAA GAGCCGTCTGTC AATC GAC-GACGGCTT ACATTTTCACTTACT TERM 3453 2192526 - 2192504 - H 89 -9.9 -4.27026 | gap 1, opp_overlap 2192504, overlap 2192502 CCGTAAAGAAAAAGA GCCGTCTGTC AATC GAC-GACGGC TTACATTTTCACTTA TERM 3454 2192504 - 2192526 + H 75 -9.9 -3.39352 | gap 1, opp_overlap 2192504 2192502 CCGTAAAGAAAAAGA GCCGTCTGTC AATC GAC-GACGGC TTACATTTTCACTTA TERM 3455 2193633 - 2193579 - H 100 -17.4 -3.38207 | opp_overlap 2193579 2193614 TATCGAAGACATCAA CCCAAGAGGATAGGTTTTCACTCGTG AAA CATTAATAGAAACCTATCCTCTTGGG TTTTTACTATTTATT TERM 3456 2193579 - 2193633 + H 100 -17.4 -4.97461 | opp_overlap 2193579, overlap 2193614 TATCGAAGACATCAA CCCAAGAGGATAGGTTTTCACTCGTG AAA CATTAATAGAAACCTATCCTCTTGGG TTTTTACTATTTATT TERM 3457 2193704 - 2193723 + H 70 -8.6 -3.36655 | gap 1, opp_overlap 2193704 2193706, overlap 2193702 2193700 2193706 AAAAATATGACAAAA GA-GGGGTG CGA CACCCCCTC TATCTTTAATTATAA TERM 3458 2193723 - 2193704 - H 87 -8.6 -4.62069 | gap 1, opp_overlap 2193704 2193702 2193700 2193706, overlap 2193706 AAAAATATGACAAAA GA-GGGGTG CGA CACCCCCTC TATCTTTAATTATAA TERM 3459 2193720 - 2193706 - H 90 -11.4 -3.88881 | opp_overlap 2193704 2193702 2193700 2193706, overlap 2193704 AAATATGACAAAAGA GGGGTG CGA CACCCC CTCTATCTTTAATTA TERM 3460 2193706 - 2193720 + H 79 -11.4 -2.5335 | opp_overlap 2193706 2193704, overlap 2193704 2193702 2193700 AAATATGACAAAAGA GGGGTG CGA CACCCC CTCTATCTTTAATTA Aflv_2212 2193760 - 2194377 + | Dienelactone hydrolase family protein Aflv_2213 2194394 - 2194543 + | hypothetical protein Aflv_2214 2194607 - 2195161 + | Transposase Aflv_2215 2195176 - 2195691 + | Transposase Aflv_2216 2196024 - 2195728 - | hypothetical protein Aflv_2217 2196513 - 2197028 + | Transposase TERM 3461 2197345 - 2197358 + G 71 -6.7 -4.13304 | opp_overlap 2197345 GTGCAAATTAAATGA TACGG AAAT CCGTA TTTTACAAATGGTTT Aflv_2218 2197028 - 2197525 + | DNA-binding response regulator, NarL family, with truncated N-terminal REC domain TERM 3462 2197557 - 2197514 - T 85 -9.1 -4.26903 | gap 1, opp_overlap 2197519 2197523 2197526, overlap 2197523 2197526 GCGATGCGACTAAAA CTCATAGAATAAGCGCTAGC AAAGA GCTAGCGCTTATTCC-TAAT TCACATATCTTCCCG TERM 3463 2197519 - 2197553 + T 100 -15.9 -2.75307 | opp_overlap 2197514 2197523 2197526, overlap 2197523 2197526 GCGACTAAAACTCAT AGAATAAGCGCTAGC AAAGA GCTAGCGCTTATTCC TAATTCACATATCTT TERM 3464 2197549 - 2197523 - T 100 -15.3 -3.59984 | opp_overlap 2197519 2197523 2197526, overlap 2197514 2197526 CTAAAACTCATAGAA TAAGCGCTAGC AAAGA GCTAGCGCTTA TTCCTAATTCACATA TERM 3465 2197523 - 2197549 + T 100 -15.3 -3.27774 | opp_overlap 2197523 2197514 2197526, overlap 2197519 2197526 CTAAAACTCATAGAA TAAGCGCTAGC AAAGA GCTAGCGCTTA TTCCTAATTCACATA TERM 3466 2197526 - 2197546 + T 90 -12.6 -3.77722 | opp_overlap 2197523 2197514 2197526, overlap 2197523 2197519 AAACTCATAGAATAA GCGCTAGC AAAGA GCTAGCGC TTATTCCTAATTCAC TERM 3467 2197546 - 2197526 - T 93 -12.6 -3.91364 | opp_overlap 2197526 2197523 2197519, overlap 2197523 2197514 AAACTCATAGAATAA GCGCTAGC AAAGA GCTAGCGC TTATTCCTAATTCAC Aflv_2219 2199181 - 2197553 - | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II TERM 3468 2197761 - 2197777 + g 86 -7.9 -4.72272 | opp_overlap 2197761 ACGACGACAAACGCA TGCGGCG TTT CGCCCCA TTTTTCATGCGGAAC TERM 3469 2199214 - 2199224 + H 79 -5.4 -4.98461 | ACATATCTTTCTTTT TGTG GAG CACA TTTCTTTTCTTGTTT gerPF 2199264 - 2199509 + | Spore germination protein gerPF-like protein gerPA 2199513 - 2199734 + | Spore germination protein PA gerPB 2199747 - 2199959 + | Spore germination protein PB gerPC 2200032 - 2200616 + | Spore germination protein PC gerPD 2200613 - 2200810 + | Spore germination protein PD gerPE 2200831 - 2201202 + | Spore germination protein PE gerPF 2201177 - 2201398 + | Spore germination protein PF Aflv_2227 2201673 - 2201395 - | Restriction endonuclease, McrA/HNH family, phage related Aflv_2228 2205045 - 2201686 - | ATPase involved in DNA repair, SbcC TERM 3470 2202152 - 2202168 + g 73 -5.1 -4.70626 | opp_overlap 2202151 2202152, overlap 2202153 ATAAATTCAACAAAG CTGTTGC CGC GCAACAC TTTTTGCAATTCTTC TERM 3471 2202153 - 2202167 + g 71 -8.6 -3.41291 | opp_overlap 2202151 2202152, overlap 2202152 TAAATTCAACAAAGC TGTTGC CGC GCAACA CTTTTTGCAATTCTT TERM 3472 2204421 - 2204433 + g 70 -7.7 -3.62849 | CTTTTGACGCATCGC CAAGC CCC GCTTG TTCTCCTTTAATCGC TERM 3473 2204747 - 2204729 - G 79 -11 -3.23274 | overlap 2204733 CGGCTGACAACGGAA CGAATGCG CAA CGCATCCG CACGCTTAAACGCGC sbcD 2206241 - 2205042 - | DNA repair exonuclease, SbcD addA 2209833 - 2206204 - | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) TERM 3474 2207567 - 2207554 - GR 74 -5.2 -4.7339 | AATAAATCGTAAAAA GCGG AAAATG CCGC GAAACGATGTTTGTT TERM 3475 2208140 - 2208155 + gr 82 -3.2 -5.42259 | opp_overlap 2208135, overlap 2208141 ACGAAAAACGGCTCA GCAAGC AACT GCTTGA TTTTTTTAGCGATCC TERM 3476 2208385 - 2208400 + gr 78 -4 -5.1675 | overlap 2208386 GCCGTCTAATATTTC TTTTCG GCTG CGAAAG TTTTTTGCTAAATCG TERM 3477 2208943 - 2208955 + gr 82 -6.2 -4.88293 | CTGTTCATCATATGC GCCG TCTTT CGGC TTTCTTTTTGCCGTT TERM 3478 2209085 - 2209098 + gr 73 -5.9 -4.47686 | opp_overlap 2209083 2209082, overlap 2209082 2209081 TCGTACAAATAATCG GGGCC GCCC GGCTC TTTCGTTTTTTGTAA TERM 3479 2209678 - 2209653 - GR 100 -13.3 -3.83262 | opp_overlap 2209651 2209653 TAAACGTCACAACAA GCAACCGATCG ACAT CGATCGGCCGC TCTTTATGCAATATT TERM 3480 2209653 - 2209678 + gr 74 -8.9 -3.54848 | opp_overlap 2209653, overlap 2209651 TAAACGTCACAACAA GCAACCGATCG ACAT CGATCGGCCGC TCTTTATGCAATATT addB 2213341 - 2209838 - | ATP-dependent nuclease, subunit B TERM 3481 2213053 - 2213068 + g 86 -11.8 -3.09452 | opp_overlap 2213052 2213049 TTTGCGTTAAATGAT GGCGGC TCAT GCCGCC TGTCTCTTGCAAAAT TERM 3482 2213328 - 2213354 + g 100 -8.7 -5.45726 | overlap 2213327 CCTTTCTTATTTTCC GTCGTGCAATG CAAAA CGTTGCTCGAC TTTTTTTCCGATGTA Aflv_2232 2213921 - 2213319 - | hypothetical protein TERM 3483 2214785 - 2214801 + G 76 -10.9 -2.69151 | overlap 2214781 2214768 TGATGGCTCATGGAT GTTTGGC ACA GCCAAAC TCGTCTATAAGCACA Aflv_2234 2214351 - 2215478 + | Transposase TERM 3484 2215487 - 2215465 - f 89 -10 -4.16284 | opp_overlap 2215468, overlap 2215468 ACATCGTTGAAGAAA CAACAAAAGC ATG ACTTTTGTTG TTGGGCAGTTGTCAA TERM 3485 2215897 - 2215867 - f 83 -6.3 -5.03961 | gap 1, opp_overlap 2215866 2215869 AAGGAAAGAAGAAAA TATTCAGCTCACTT TATG ATGTG-GCTGAATA GTTACATGACTACAT TERM 3486 2216786 - 2216798 + G 74 -7.7 -4.03234 | GTAATCGGTGTTCAA CCAGA TTC TCTGG TTTCTCTGGAAACAA Aflv_2236 2216087 - 2218096 + | ATP-dependent endonuclease of the OLD family TERM 3487 2218475 - 2218465 - g 75 -5.4 -4.82901 | opp_overlap 2218465 2218465 CGTTTCTGAGAAAAA GAGA AAA TCTC TCTTTAAACAAATAA TERM 3488 2218954 - 2218935 - g 78 -5.8 -4.90917 | AAATTCAATTAAAAA CTAATTAC AGAA GTAATCAG GACATTATTGATGCA pcrA 2218097 - 2219908 + | ATP-dependent DNA helicase TERM 3489 2220034 - 2220074 + T 100 -13.6 -4.16842 | gap 1, opp_overlap 2220032 2220031 2220041 TAACATGATTAATTT GTAACTATTCAGC-CACAT CATA AAGTGAGCTGAATAGTTAC TTTGTTCACAGTAAA Aflv_2238 2221992 - 2220259 - | Adenine-specific DNA methyltransferase BseCI TERM 3490 2221334 - 2221314 - G 71 -3.2 -4.93877 | gap 1, overlap 2221315 TTTCACCAAAGAAAA TCGCAGGCA AAAC TGCC-GCGT CAAAAAATTTCGTAT Aflv_2239 2222126 - 2222371 + | Predicted transcriptional regulator, xre family TERM 3491 2223087 - 2223067 - g 73 -2.7 -5.15634 | TATTGTACTAAAAAA TCTAATT GGCACAA AATTAGA TGCAATGCCAACAAA Aflv_2240 2222375 - 2223499 + | Predicted nuclease of restriction endonuclease fold protein TERM 3492 2223619 - 2223603 - T 95 -2.9 -6.37666 | AGAAAAGAAAAAAAA CGAAAGA GTG TCTCACG AAAGAGGAATTCGAC TERM 3493 2223790 - 2223811 + T 75 -5.8 -4.70107 | opp_overlap 2223790 2223793 TAAATCGATTGAAAA GATGCCCT GCGGAG GGGGCGTC TTTATTATTTTACTA TERM 3494 2223845 - 2223877 + T 74 -6.3 -4.39426 | opp_overlap 2223850, overlap 2223848 2223850 TATTACCCTTTATAA AAAAATCCCCTCG TTTTTTT CGAGGGGATGTTA TTTTATGCACCTGTA TERM 3495 2223848 - 2223874 + T 80 -8 -4.31397 | opp_overlap 2223850, overlap 2223845 2223850 TACCCTTTATAAAAA AATCCCCTCG TTTTTTT CGAGGGGATG TTATTTTATGCACCT TERM 3496 2223872 - 2223850 - T 100 -10.6 -5.60993 | opp_overlap 2223848 2223845 2223850 CCCTTTATAAAAAAA TCCCCTCG TTTTTTT CGAGGGGA TGTTATTTTATGCAC TERM 3497 2223850 - 2223872 + T 83 -10.6 -3.75581 | opp_overlap 2223850, overlap 2223848 2223845 CCCTTTATAAAAAAA TCCCCTCG TTTTTTT CGAGGGGA TGTTATTTTATGCAC Aflv_2241 2225160 - 2223880 - | Isocitrate lyase TERM 3498 2224183 - 2224207 + g 85 -5.8 -5.10208 | GAGCTCCACTTGGAA GTTGG-CGATCG TTT CG-TCGTCCAAC TTTTTCTTCCAGTTG Aflv_2242 2226626 - 2225379 - | Zn-dependent protease with chaperone function TERM 3499 2226416 - 2226398 - G 75 -3.2 -5.21506 | overlap 2226408 ACAACAACACAAAAA TATAAATG ACC CACTCATA TGGAACAGATAAAAA TERM 3500 2226448 - 2226435 - G 93 -2.5 -6.08563 | AACAGATAAAAAAAA TAAAA AGTT TTTTA CTTCCGAAAACTGTT TERM 3501 2226871 - 2226861 - g 73 -5.4 -4.66938 | ACCGCCAAGATAAAA TGGA GTT TCCA AAAGATGTGACGATG Aflv_2243 2226770 - 2227360 + | Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory system TERM 3502 2227371 - 2227342 - f 71 -9.4 -2.76265 | opp_overlap 2227343 2227349, overlap 2227349 AGTGTATAAACGAAT TGTAAAAGAGGC GAAATA GCCTCTTTTACT CTTGTCTGACCACTA TERM 3503 2227343 - 2227370 + F 93 -12.9 -3.31905 | opp_overlap 2227342 2227349, overlap 2227349 GTGTATAAACGAATT GTAAAAGAGGC GAAATA GCCTCTTTTAC TCTTGTCTGACCACT TERM 3504 2227349 - 2227364 + F 74 -6.1 -4.48263 | opp_overlap 2227349 2227342, overlap 2227343 AAACGAATTGTAAAA GAGGC GAAATA GCCTC TTTTACTCTTGTCTG TERM 3505 2227364 - 2227349 - f 71 -6.1 -4.2237 | opp_overlap 2227343 2227349, overlap 2227342 AAACGAATTGTAAAA GAGGC GAAATA GCCTC TTTTACTCTTGTCTG TERM 3506 2227608 - 2227589 - g 71 -2.2 -5.23396 | gap 1, overlap 2227583 2227590 AACAATTAACAAAAA CGTTTGCTG TAG CAG-AAACA AAATCATATGCAAAT TERM 3507 2228138 - 2228128 - g 75 -2.4 -5.34309 | opp_overlap 2228128, overlap 2228117 ATTAGCAAAGAAAAA CCTC TTG GCGG ATATTTAAATTTTAT tlpB 2227447 - 2229558 + | Methyl-accepting chemotaxis protein TERM 3508 2229555 - 2229579 + T 100 -17.3 -5.81032 | TCAACGATTCACTTT GTAGATCAGCC GAT GGCTGATCTAC TTTTTTTTCACATTA Aflv_2245 2229956 - 2229576 - | Predicted transcriptional regulator, xre family TERM 3509 2229838 - 2229864 + g 72 -7.4 -4.05402 | overlap 2229839 TTATTGATCGTGCTT TTTGGTTGACCA GTT TGTTCAACTAAA TCTTTTTGCTTCAAA Aflv_2246 2230067 - 2231434 + | Multidomain signal transduction protein, predicted phosphodiesterase (contains HD-GYP domain) TERM 3510 2231461 - 2231434 - f 77 -10.7 -2.89803 | opp_overlap 2231434, overlap 2231431 TAATATAATGAATTA GCGATAAGAAG CTACAT CTTCCTATCGC TTTTTTCTTGCATAG TERM 3511 2231434 - 2231461 + F 95 -8.5 -5.4833 | opp_overlap 2231434 2231431 TAATATAATGAATTA GCGATAAGAAG CTACAT CTTCCTATCGC TTTTTTCTTGCATAG Aflv_2247 2231469 - 2232053 + | Transcriptional regulator LuxR family Aflv_2248 2232069 - 2233289 + | Predicted signal transduction protein containing modified EAL and HD-GYP domains Aflv_2249 2233319 - 2235763 + | Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) TERM 3512 2235752 - 2235771 + T 93 -9.3 -5.24129 | opp_overlap 2235752 ATGGAAACGTTAAAA TCCCCGA TGTAAC TCGGGGA TTTTTTATACGAGCA TERM 3513 2235771 - 2235752 - T 85 -9.3 -4.24404 | opp_overlap 2235752 ATGGAAACGTTAAAA TCCCCGA TGTAAC TCGGGGA TTTTTTATACGAGCA Aflv_2250 2236612 - 2235776 - | ABC-type uncharacterized transport system, ATPase component TERM 3514 2236219 - 2236239 + gT 84 -9.7 -3.75766 | overlap 2236217 GCTTTTTCGTTACGC CGAAGCGAA GCG TCCGCTTCG TTGTTCGATTATAGG rbsC 2237519 - 2236536 - | ABC-type uncharacterized transport system, permease component rbsB 2238520 - 2237528 - | ABC-type uncharacterized transport system, periplasmic component TERM 3515 2238632 - 2238614 - R 100 -7.4 -6.11392 | opp_overlap 2238614 2238613 AAATAAATAAAAAAA CGGTGC TTACATC GCACCG CTTTGAGAGATGACT Aflv_2253 2240173 - 2238620 - | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II TERM 3516 2240196 - 2240213 + r 81 -7.1 -4.5442 | opp_overlap 2240200 CCCCCATTTATTTTA TGAATGA ATCA TCATTCA TTTTATAATTAAAAA TERM 3517 2240253 - 2240231 - R 93 -5.8 -5.68023 | overlap 2240222 TTATAATTAAAAAAA TTCTAAATAT ATT ATATTTAAAA AACGGACCATAAGCA TERM 3518 2240351 - 2240334 - R 79 -4.9 -5.08824 | opp_overlap 2240334 TTTTTATGTAAAAAA GTACTAT AAAA ATAGCAC TTACCTATTATACAT Aflv_2254 2242053 - 2240824 - | Transposase TERM 3519 2241232 - 2241242 + g 71 -3.2 -4.94058 | overlap 2241210 CATGAAACGGTTTTC TTGC CCA GCGA TTTTCTTTAGCTTGC TERM 3520 2242303 - 2242288 - R 73 -5.4 -4.56133 | CGGGAAGAAGCAAAA TCGACC TGGC GATCGA GAGGCTTTCCTCGAT TERM 3521 2242698 - 2242716 + r 71 -5.2 -4.56597 | GCGTTACTACGCCCA GCGCTGGA TGA TCGAGTGC TTTTTCCGACAGGCC TERM 3522 2243448 - 2243490 + r 100 -14.3 -3.84406 | gap 1, overlap 2243448 CGTATTCCCTGGTCA CACTTG-TGCTAGTTGAGCG CTGA CGCTCAACTAGCACCACGGG TTATTGTAATAAAAA TERM 3523 2243448 - 2243489 + r 93 -14.5 -2.90322 | overlap 2243448 CGTATTCCCTGGTCA CACTTGTGCTAGTTGAGCG CTGA CGCTCAACTAGCACCACGG GTTATTGTAATAAAA Aflv_2255 2245414 - 2243909 - | Rhs family protein TERM 3524 2244020 - 2244034 + g 73 -5.8 -4.43949 | TTTCTTATACTGCAT TCTAAA TAC TTTAGA TTTATCTTTACTTTT TERM 3525 2244299 - 2244313 + g 75 -8.6 -3.88291 | opp_overlap 2244281, overlap 2244282 2244281 CGCTGCTTTCCAGCC GCCTTT TTT AAAGGC TTTATACCCATCATA TERM 3526 2245482 - 2245441 - R 86 -4.3 -5.46657 | gap 1 GACTTCAATAAAAAA GGGGCTGTCCCATCATCGGA TTG TTCGGCTATTGGAC-GCCCC GTTCGGACATGTATC TERM 3527 2245733 - 2245751 + r 71 -5.2 -4.56597 | GCGTTACTACGCCCA GCGCTGGA TGA TCGAGTGC TTTTTCCGACAGGCC TERM 3528 2246123 - 2246093 - R 85 -5.5 -5.25803 | gap 1, opp_overlap 2246093, overlap 2246115 AATTGTTATAAAAAA GACGACACTGCT ATAAAGCA AGCAG-GTCGCC TAGATTGGTTCTATC Aflv_2256 2246571 - 2246134 - | hypothetical protein TERM 3529 2247621 - 2247591 - R 100 -14.1 -4.31164 | TTGATATAACAGAAA GAGGTTATCCCCG AAACA CTGGGATAACCTC TGACCAAGAAACACT Aflv_2257 2247978 - 2247694 - | hypothetical protein TERM 3530 2248502 - 2248512 + H 72 -3.2 -5.04868 | CATGAAACGGTTTTC TTGC CCA GCGA TTTTCTTTAGTTTGC Aflv_2258 2248812 - 2249144 + | Transcriptional regulator LuxR family TERM 3531 2249149 - 2249122 - T 72 -8.5 -3.51998 | overlap 2249120 2249124 GCAAAGCAAAAGATA TAGGGCTATTC GGAAAT GAATAGCCCGA CCAAATCACCCTCAA TERM 3532 2249147 - 2249124 - T 80 -11.1 -3.31476 | overlap 2249122 2249120 AAAGCAAAAGATATA GGGCTATTC GGAAAT GAATAGCCC GACCAAATCACCCTC Aflv_2259 2249345 - 2249238 - | hypothetical protein TERM 3533 2249451 - 2249421 - R 91 -7.7 -5.26247 | opp_overlap 2249421 TCAAAACAAATAAAA GCTTACTATTCAC AATCA ATGAACAGCAAGC TTGCTATAGGTGATT TERM 3534 2249504 - 2249486 - R 73 -6.6 -4.25104 | opp_overlap 2249486, overlap 2249487 CGCTTTCGACTAAAA TCGCCCGT TGT ACAGGCGG GCAATATGTCGCCGC TERM 3535 2249503 - 2249487 - R 75 -10.1 -3.14848 | opp_overlap 2249486, overlap 2249486 GCTTTCGACTAAAAT CGCCCGT TGT ACAGGCG GGCAATATGTCGCCG Aflv_2260 2249633 - 2249466 - | hypothetical protein TERM 3536 2249527 - 2249544 + g 73 -2.7 -5.1287 | overlap 2249530 GTCGCCGCAACGTTT GTTTCAT ATAA ATGATAC TTTTTTCCGTCTAAC TERM 3537 2249621 - 2249637 + g 80 -6.5 -4.84761 | opp_overlap 2249621 TTAAGTGTTGGATAA CAGCATG CAT CAAGCTG TTTTTATCAAAATGT Aflv_2261 2249910 - 2249716 - | hypothetical protein TERM 3538 2249845 - 2249828 - G 95 -4.9 -5.79595 | TGGTAAAAGAAAAAA CATTGTA CCAT CACAATG AGCCCATGTATAGAA TERM 3539 2249987 - 2249975 - R 100 -6.2 -5.83211 | opp_overlap 2249975 TACCAAAATAAAAAA GGGG ACTTG CCCC TTGTTAAAACGACAA Aflv_2262 2250659 - 2249991 - | Exonuclease TERM 3540 2250311 - 2250326 + g 71 -3.3 -5.06414 | AAATGTAATGACCGA CAAAG CATACA CTTTG TTTTTGTTCAACAAA Aflv_2263 2252500 - 2250665 - | Multidomain protein (contains CAP-ED, 2CBS and a predicted nucleotidyltransferase domains) TERM 3541 2251812 - 2251796 - G 72 -8 -3.81258 | opp_overlap 2251795 2251806, overlap 2251790 GTAATAATACGCAAA TCGCGA AATCG TCGCGA CGTCTTTTGTCATCA TERM 3542 2251852 - 2251840 - G 70 -7.7 -3.62046 | TCACTCGTTCAACAA CCGTA TCG TACGG AAGCGATTGCCCCAG TERM 3543 2252545 - 2252522 - R 100 -15.4 -4.82901 | CCCCCCTTACAAAAA CGGCATCTGT ATAT ACAGATGCCG AACACATTATCTCAT Aflv_2264 2254201 - 2252552 - | Sodium:solute symporter Aflv_2265 2254530 - 2254228 - | Predicted small membrane protein Aflv_2266 2254720 - 2254517 - | Uncharacterized short membrane protein Aflv_2267 2255206 - 2254883 - | Transposase Aflv_2268 2256057 - 2255230 - | Transposase TERM 3544 2256358 - 2256321 - R 86 -7.1 -5.10877 | ATAACAAATGAAAAA GGCTAATCTGAAACCTT CAAC ATGTTTTGAGATTAGCC CCATCATCTCCATTC TERM 3545 2256626 - 2256600 - R 95 -13.1 -3.63782 | overlap 2256605 GAAGATCACCTCAAA GGAAAGGTAGC CGTTC GCTACCCTTCC CATGTCCATCTTGTT TERM 3546 2256621 - 2256605 - R 75 -8 -4.07246 | overlap 2256600 TCACCTCAAAGGAAA GGTAGC CGTTC GCTACC CTTCCCATGTCCATC Aflv_2269 2257351 - 2256617 - | Metal-dependent hydrolase of the beta-lactamase superfamily III Aflv_2270 2257502 - 2257636 + | hypothetical protein TERM 3547 2257632 - 2257673 + T 90 -12.6 -3.49653 | gap 1, opp_overlap 2257638 2257644, overlap 2257638 2257644 GTTTGAACGTTTCTT GCTAAAGTAAAA-GCAGCC TGCGC GGCTGCTTTTTACTTTAAC TTATATACACGTGCT TERM 3548 2257667 - 2257638 - T 79 -10.2 -3.53091 | gap 1, opp_overlap 2257632 2257638 2257644, overlap 2257644 ACGTTTCTTGCTAAA GTAAAA-GCAGCC TGCGC GGCTGCTTTTTAC TTTAACTTATATACA TERM 3549 2257638 - 2257667 + T 84 -10.2 -3.83323 | gap 1, opp_overlap 2257638 2257644, overlap 2257632 2257644 ACGTTTCTTGCTAAA GTAAAA-GCAGCC TGCGC GGCTGCTTTTTAC TTTAACTTATATACA TERM 3550 2257660 - 2257644 - T 91 -9.4 -4.54727 | opp_overlap 2257638 2257632 2257644, overlap 2257638 CTTGCTAAAGTAAAA GCAGCC TGCGC GGCTGC TTTTTACTTTAACTT TERM 3551 2257644 - 2257660 + T 93 -9.4 -5.01042 | opp_overlap 2257644 2257638, overlap 2257638 2257632 CTTGCTAAAGTAAAA GCAGCC TGCGC GGCTGC TTTTTACTTTAACTT malL 2259373 - 2257664 - | Oligo-1,4-1,6-alpha-glucosidase (sucrase-maltase-isomaltase) TERM 3552 2257743 - 2257756 + g 70 -5.3 -4.44608 | overlap 2257740 TCATCGACCGTATAG TTGCT AATA AGCAA TTGTTTTTCGGTGAA Aflv_2272 2260218 - 2259391 - | ABC-type sugar transport system, permease component TERM 3553 2260153 - 2260140 - G 73 -5.3 -4.72029 | TCGAACTTAACAAAA TCCAT AAAA ATGGA AACATGACTAAAAAA Aflv_2273 2261525 - 2260230 - | ABC-type sugar transport system, permease component TERM 3554 2260599 - 2260612 + g 76 -8.1 -4.22214 | opp_overlap 2260599 2260598 2260596 AGCAAGTAGCAAGAG CGCCA TGTA TGGCG TTGTTTTCCATACAT TERM 3555 2261058 - 2261068 + g 70 -5.4 -4.4572 | CCCGTTTTCGTTTAA CGTT TTT AACG TTTGTTTAGCATCTT TERM 3556 2261591 - 2261549 - R 72 -8.5 -3.53012 | gap 1, opp_overlap 2261537, overlap 2261552 CCCCCTTTGTGCAAA GGATTTAGCCTTCAGCGCTC ATGT GAG-GCTGAAGGCTAACGCG TACTACTGCATAACT TERM 3557 2261588 - 2261552 - R 90 -13.2 -2.90496 | gap 1, overlap 2261549 CCTTTGTGCAAAGGA TTTAGCCTTCAGCGCTC ATGT GAG-GCTGAAGGCTAAC GCGTACTACTGCATA Aflv_2274 2262943 - 2261594 - | ABC-type sugar transport system, periplasmic component Aflv_2275 2263959 - 2262940 - | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 3558 2264054 - 2264064 + r 75 -2.6 -5.26875 | opp_overlap 2264054 GTATATGCAACTTAA TTTT TAA AAAA TTTTTTCATTAAAAA TERM 3559 2264080 - 2264065 - R 72 -3.4 -5.055 | TTAATTTTTAAAAAA TTTTTT CATT AAAAAA AGCTTCCGAAGCTTA TERM 3560 2264082 - 2264110 + r 91 -10.3 -4.58663 | opp_overlap 2264082 TTTTCATTAAAAAAA GCTTCCGAAGCTT ATT ATGCTTCAGAAGC TTTTTCGACGATCGT TERM 3561 2264110 - 2264082 - R 100 -12.5 -5.52384 | opp_overlap 2264082 TTTTCATTAAAAAAA GCTTCCGAAGCTT ATT ATGCTTCAGAAGC TTTTTCGACGATCGT Aflv_2276 2266402 - 2264096 - | Predicted membrane protein TERM 3562 2265805 - 2265829 + g 100 -10.1 -5.0133 | TATTCGTTCCGTCTT TTGCATCATGG AGT CCATCATGCAA TTTTTTCGCCCCGTC TERM 3563 2266140 - 2266150 + g 71 -4 -4.82998 | overlap 2266123 TGGCTGACAAAATGC CAAT CAA ATTG TTTCTTTTCCTTTAA TERM 3564 2266495 - 2266465 - R 81 -2.6 -5.64421 | opp_overlap 2266470, overlap 2266467 2266470 ACTTTAAACAAAAAA GAGAAGGATCATCA TGG TGACAATCCTTTTA ACAAATGTAAATGAA TERM 3565 2266490 - 2266470 - R 73 -6.9 -4.29034 | opp_overlap 2266470, overlap 2266467 2266465 AAACAAAAAAGAGAA GGATCATCA TGG TGACAATCC TTTTAACAAATGTAA Aflv_2277 2267045 - 2266476 - | Transcriptional regulator TetR/AcrR family TERM 3566 2267009 - 2266994 - G 73 -5.4 -4.70659 | CTTTATAGCCAAAAA GCGAAA ACGA CTTCGC TGCCGCTTCAATAAT TERM 3567 2267068 - 2267092 + r 72 -4.3 -4.67943 | opp_overlap 2267073, overlap 2267065 CATCCTTTATTTTGA CTAAATGAACA TTT TGGTCATTTCG TTTTATATCTTAACA hemY 2268564 - 2267146 - | Protoporphyrinogen IX and coproporphyrinogen III oxidase TERM 3568 2267718 - 2267751 + g 79 -3.1 -5.25803 | gap 1, overlap 2267721 GCGATGGCAATGATT GATGCGGAACAGCG ACTACAA CGCTA-TCCGCTTC TTTTTTCTCGCCGTT TERM 3569 2267962 - 2267976 + g 78 -5.6 -4.81551 | CCGCTTCATTCCGAG CACGAG ACT CCCGTG TTTTTGCTCTAAGTG TERM 3570 2268349 - 2268359 + g 73 -5.4 -4.72272 | overlap 2268346 TTCGTGAATGAGGCG TGAG GCG CTCA TTTTTCGTGCCAAAA hemH 2269508 - 2268561 - | Protoheme ferro-lyase (ferrochelatase) hemE 2270565 - 2269516 - | Uroporphyrinogen-III decarboxylase Aflv_2281 2270716 - 2271252 + | Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides TERM 3571 2271247 - 2271265 + T 77 -10.3 -3.41878 | opp_overlap 2271247 GCAGTTGTAAAAGAA GGCTGAC ATATC GTCAGCC TTATCCATTCCAAGC TERM 3572 2271265 - 2271247 - T 90 -11 -4.18506 | opp_overlap 2271247 GCAGTTGTAAAAGAA GGCTGACA TAT CGTCAGCC TTATCCATTCCAAGC Aflv_2282 2271634 - 2271266 - | Rhodanese-related sulfurtransferase Aflv_2283 2271637 - 2272905 + | Putative petal-dependent amidohydrolase TERM 3573 2272927 - 2272908 - T 89 -9.3 -4.68645 | opp_overlap 2272907 2272906 TATGGAAAAGTAAAA GAAGCGG TTCAAG CCGCTTC CCGTTTTTTTCTCAT ecsB 2274100 - 2272916 - | ABC-type exoprotein transporter, permease protein EcsB TERM 3574 2273355 - 2273368 + g 78 -2.4 -5.45726 | opp_overlap 2273355, overlap 2273339 AAACGGAAAAGGAAA CGAA GTGCCG TTCG TTTTTTTACCGTATG TERM 3575 2274051 - 2274071 + g 77 -6.2 -4.67755 | gap 1 TACCGTCTCACTTCG GCGAGATGA GCAA TCATC-CGC TTTTTCCATAACTGT ecsA 2274860 - 2274093 - | ABC-type exoprotein transporter, ATP-binding protein EcsA TERM 3576 2275047 - 2275027 - H 77 -6.1 -4.56133 | opp_overlap 2275026 CTGTAACAACGAAAA CACTCCCTT GAA AAGGGGATG GTCATCTTGAACAAT TERM 3577 2275141 - 2275179 + H 87 -8.8 -4.56597 | overlap 2275147 TCATGAACATCCCTC TTCAATGGGCAGGATGCG ATA CGCATCCTGCTCTTTCCG TTTTTCGAAACGACG TERM 3578 2275147 - 2275173 + H 100 -18.8 -3.99805 | overlap 2275141 ACATCCCTCTTCAAT GGGCAGGATGCG ATA CGCATCCTGCTC TTTCCGTTTTTCGAA hit 2275242 - 2275661 + | HIT family hydrolase TERM 3579 2275689 - 2275665 - T 100 -14.4 -4.2679 | opp_overlap 2275656 2275665 2275668 CAAGCTTTATGAAAA GAAGGTGTCC CGCAC GGACACCTTC TCTCGTCATGATTAC TERM 3580 2275665 - 2275689 + T 93 -14.4 -2.84687 | opp_overlap 2275665, overlap 2275656 2275668 CAAGCTTTATGAAAA GAAGGTGTCC CGCAC GGACACCTTC TCTCGTCATGATTAC TERM 3581 2275668 - 2275686 + T 79 -10.3 -3.56541 | opp_overlap 2275665, overlap 2275665 2275656 GCTTTATGAAAAGAA GGTGTCC CGCAC GGACACC TTCTCTCGTCATGAT prsA 2276567 - 2275701 - | Parvulin-like peptidyl-prolyl isomerase (molecular chaperone) TERM 3582 2276822 - 2276802 - R 93 -11.2 -4.17002 | opp_overlap 2276802 TACTAAATGAAAGAA GCTGACAG GGACA CTGTCAGC TTTTTTACGCAAACA TERM 3583 2276802 - 2276822 + r 95 -11.2 -5.00616 | opp_overlap 2276802 TACTAAATGAAAGAA GCTGACAG GGACA CTGTCAGC TTTTTTACGCAAACA Aflv_2288 2277006 - 2276827 - | hypothetical protein TERM 3584 2277234 - 2277221 - g 82 -3.1 -5.44119 | gap 1 CGCACCGGAAAAAAA GC-CGT TTT ACGCGC TCGTCATCCGTTATG TERM 3585 2277338 - 2277324 - g 80 -2.8 -5.42164 | TATAAACAACAAAAA GAGGAA GGT TTCGTC ATCTTCACCTCGCTT Aflv_2289 2277144 - 2277485 + | hypothetical protein hpr 2278076 - 2277465 - | Transcriptional regulator, MarR family Aflv_2291 2278199 - 2278381 + | hypothetical protein TERM 3586 2278396 - 2278421 + T 79 -3.2 -5.3798 | opp_overlap 2278399, overlap 2278399 AGAACGATATAAGGA AAACCCGACC ATAAAC GATCGGGTTC TTTTTATTATTGTTG TERM 3587 2278418 - 2278399 - T 82 -7.8 -4.53636 | opp_overlap 2278396 2278399 ACGATATAAGGAAAA CCCGACCA TAAA CGATCGGG TTCTTTTTATTATTG TERM 3588 2278399 - 2278418 + T 74 -4.9 -4.72127 | opp_overlap 2278399, overlap 2278396 ACGATATAAGGAAAA CCCGACC ATAAAC GATCGGG TTCTTTTTATTATTG Aflv_2292 2278949 - 2278428 - | hypothetical protein TERM 3589 2278533 - 2278512 - G 74 -8 -3.92641 | AATCGTATTGACAAA CGCTGTCG GAATGA CAACAGCG ATAAACAGCCCGCCA TERM 3590 2279055 - 2279045 - R 78 -2.6 -5.48213 | opp_overlap 2279045, overlap 2279046 GAGGTAAAATAAAAA TTTT CAA AAAA TATTTTTTCGGAACG serC 2280124 - 2279048 - | Phosphoserine aminotransferase TERM 3591 2279927 - 2279917 - G 79 -3.2 -5.40072 | overlap 2279918 CTCCTTGTAAAAAAA GCAC ATC ATGC GTATCAGGAATGTTC TERM 3592 2280244 - 2280214 - R 79 -4.8 -5.03145 | opp_overlap 2280219, overlap 2280219 GAATTTTTTAAAAAA TAAAAGACCTTG TTTATTC CAAGGCCTTTTG ACGTCGCTCTCGCGC TERM 3593 2280239 - 2280219 - R 86 -4.7 -5.42198 | opp_overlap 2280219, overlap 2280214 TTTTAAAAAATAAAA GACCTTG TTTATTC CAAGGCC TTTTGACGTCGCTCT Aflv_2294 2280400 - 2280227 - | hypothetical protein TERM 3594 2280674 - 2280651 - g 75 -6 -4.6821 | gap 1 AATTTGAACATAAAA CGCATCGCTGT ACA ACATCGA-GCG GCAAATTGATTTTAT Aflv_2295 2280515 - 2280700 + | hypothetical protein TERM 3595 2280720 - 2280702 - T 91 -11.7 -3.92373 | opp_overlap 2280697 TATTTCATCGATAAA GCCCCGA TCATC TCGGGGC TAAAATAATTGTTCC hemZ 2282219 - 2280720 - | Coproporphyrinogen III oxidase hemZ TERM 3596 2280806 - 2280826 + g 71 -4.8 -4.65895 | gap 1 GCTCTTTCGGGTTGG CAAAATGCG TAAT CGC-TTTTG TTTTTGGATGCACGA yhaX 2283179 - 2282289 - | HAD superfamily hydrolase TERM 3597 2283232 - 2283209 - R 100 -8.2 -5.75945 | AGGGGGTAAAAAAAA GAACACCCAT TTTT ATGAGTGTCC GTCATATAGCTCGTC Aflv_2298 2283583 - 2283221 - | hypothetical protein TERM 3598 2283385 - 2283402 + g 78 -5.5 -5.05606 | CGACATCTGCATCGC TGACCGG GAAT CCGCTCA TTTGTTTTTGTTGGA Aflv_2299 2284770 - 2283628 - | hypothetical protein Aflv_2300 2285076 - 2284774 - | hypothetical protein Aflv_2301 2285162 - 2285314 + | hypothetical protein TERM 3599 2285338 - 2285315 - f 73 -9.5 -3.19339 | opp_overlap 2285316, overlap 2285294 2285313 2285312 2285316 CATGAAGTAAAATGA GGCGGCGAG CATTTT CTCGCCGCT TTTTGTATAATGAAT TERM 3600 2285337 - 2285316 - f 90 -13 -2.5088 | opp_overlap 2285316, overlap 2285294 2285315 2285313 2285312 ATGAAGTAAAATGAG GCGGCGAG CATTTT CTCGCCGC TTTTTGTATAATGAA TERM 3601 2285316 - 2285337 + F 100 -13 -5.00895 | opp_overlap 2285294 2285316 2285315 2285313 2285312 ATGAAGTAAAATGAG GCGGCGAG CATTTT CTCGCCGC TTTTTGTATAATGAA Aflv_2302 2285383 - 2286264 + | Transcriptional regulator TERM 3602 2286276 - 2286287 + F 81 -3 -5.61596 | opp_overlap 2286261 TTAGGCACATTGCCC GAAA ACGT TTTC TTTTTTTGTGCACGT TERM 3603 2286978 - 2286988 + G 71 -8.2 -3.56325 | AGAAGCGATGACGAT GGCG ACG CGCC TTGTCGTTATGAAAG msmX 2286376 - 2287488 + | ABC-type sugar transport system, ATPase component TERM 3604 2287496 - 2287515 + T 86 -7.8 -4.91084 | opp_overlap 2287489 2287493 2287496 AGAAATAATAACGGA GCCCGC CAAATGAA GCGGGC TTTTATTCTTGAATG Aflv_2304 2287640 - 2287518 - | hypothetical protein Aflv_2305 2287995 - 2287708 - | hypothetical protein sspA 2287979 - 2288185 + | Small acid-soluble spore protein (alpha-type SASP) TERM 3605 2288233 - 2288186 - TR 89 -10 -4.13903 | gap 1, opp_overlap 2288197, overlap 2288188 2288197 TACACAACTAAATAA CA-TGGCTGAAACCCCCAAGCGA AAA TCGCTTGGGGGTTTTACTCAATA CGTCGCAAAAATTGT TERM 3606 2288230 - 2288188 - TR 100 -16.4 -3.64905 | opp_overlap 2288197, overlap 2288186 2288197 CACAACTAAATAACA TGGCTGAAACCCCCAAGCGA AAA TCGCTTGGGGGTTTTACTCA ATACGTCGCAAAAAT TERM 3607 2288221 - 2288197 - TR 100 -20.1 -3.57883 | opp_overlap 2288197, overlap 2288188 2288186 ATAACATGGCTGAAA CCCCCAAGCGA AAA TCGCTTGGGGG TTTTACTCAATACGT TERM 3608 2288197 - 2288221 + Tr 100 -20.1 -4.28548 | opp_overlap 2288197 2288188 2288186 ATAACATGGCTGAAA CCCCCAAGCGA AAA TCGCTTGGGGG TTTTACTCAATACGT Aflv_2307 2288988 - 2288224 - | ABC-type amino acid transport system, ATPase component TERM 3609 2288337 - 2288326 - G 74 -4.4 -5.00616 | overlap 2288328 TCCTTCGTCAAAAAA GATG ACTT CATC AGCCACTTCACGTGC Aflv_2308 2289688 - 2288978 - | ABC-type amino acid transport system, permease component TERM 3610 2289588 - 2289615 + g 72 -9.8 -2.76315 | opp_overlap 2289588, overlap 2289587 ATGGTATATAGCAAA GCTCCCTTCGCC AATG GGAGAAGGGAAC CTTTCGCAATATTCG TERM 3611 2289615 - 2289588 - G 100 -12 -3.88766 | opp_overlap 2289588 2289587 ATGGTATATAGCAAA GCTCCCTTCGCC AATG GGAGAAGGGAAC CTTTCGCAATATTCG Aflv_2309 2290463 - 2289666 - | ABC-type amino acid transport system, periplasmic component TERM 3612 2289819 - 2289840 + g 71 -8.7 -3.29123 | overlap 2289817 AGCATCATCATGTGT CGCGACAAT TTGA ATTGGCGCG TCTGGTTTTTGTTTT TERM 3613 2290527 - 2290543 + r 70 -3.6 -4.97402 | opp_overlap 2290528, overlap 2290528 CATGTCAATAAAAAA AGGAGC AAATC GCTCCC TTTTTATACATTTTC TERM 3614 2290542 - 2290528 - R 100 -7.8 -5.80364 | opp_overlap 2290528 2290527 ATGTCAATAAAAAAA GGAGCA AAT CGCTCC CTTTTTATACATTTT Aflv_2310 2291812 - 2290547 - | Hemolysin related protein containing CBS domains TERM 3615 2290991 - 2291012 + g 88 -10.1 -4.21737 | CACAACAAATAGCGG CGTGCGCAA CAAT TCGCGCACG TTTACTTCTTTTCCT TERM 3616 2291894 - 2291917 + r 71 -6.6 -4.1196 | opp_overlap 2291895, overlap 2291895 2291913 TAACTGAAAAAGAAA ACGACTGCAC ATAT GCGCAGTCGC TTTTACGACTCGATT TERM 3617 2291916 - 2291895 - R 100 -12.3 -5.29885 | opp_overlap 2291894 2291895 2291913 AACTGAAAAAGAAAA CGACTGCAC ATAT GCGCAGTCG CTTTTACGACTCGAT TERM 3618 2291895 - 2291916 + r 75 -10.1 -3.06694 | opp_overlap 2291895, overlap 2291894 2291913 AACTGAAAAAGAAAA CGACTGCAC ATAT GCGCAGTCG CTTTTACGACTCGAT Aflv_2311 2292970 - 2292089 - | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase moeB 2293901 - 2292882 - | Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis thiG 2294668 - 2293901 - | Uncharacterized enzyme of thiazole biosynthesis (hydroxyethylthiazole phosphate biosynthesis) TERM 3619 2294452 - 2294473 + g 72 -6.5 -4.40184 | CCTCTGCTGTTTTTG CTCCTGCCG TATT CGGTAGCAG TTTATATTTCGTTAC thiS 2294873 - 2294670 - | Sulfur transfer protein involved in thiamine biosynthesis goxB 2295978 - 2294857 - | Glycine/D-amino acid oxidase (deaminating) tenI 2296580 - 2295966 - | Thiamine monophosphate synthase Aflv_2317 2297377 - 2296583 - | ABC-type cobalt transport system, permease component CbiQ TERM 3620 2296829 - 2296843 + g 71 -8.6 -3.56092 | opp_overlap 2296817 CAATTCGAGTTTACC GCGAAA CCC TTTCGC TTTAGCAGCTCGTCG TERM 3621 2297149 - 2297137 - G 71 -4.1 -4.86731 | overlap 2297138 2297140 CTTTTCCAAACAAAA TCATC GAC GACGA CGTAGAAATGAAAAT Aflv_2318 2298825 - 2297374 - | ABC-type cobalt transport system, ATPase component TERM 3622 2297605 - 2297633 + g 77 -10.3 -3.16323 | opp_overlap 2297592 2297602, overlap 2297624 AAGAAGCAATAGGCG ATGTTGCTCCGTC ACC GACGCAGCAACAC TTAGTCGCCGCTTTT TERM 3623 2298461 - 2298488 + g 82 -3.3 -5.49234 | overlap 2298463 ACGTGCGGGAGACGG AGGCGCACAAG GCGAAG CATGTGCGCTA TTTTTTCTTCCATCT TERM 3624 2298463 - 2298486 + g 79 -8.1 -4.37495 | overlap 2298461 GTGCGGGAGACGGAG GCGCACAAG GCGAAG CATGTGCGC TATTTTTTCTTCCAT TERM 3625 2298756 - 2298768 + g 74 -4.8 -4.82901 | TCGAAAGCGATACAT CGGT AAATA ACCG TTTTTCTGCCCCCGG Aflv_2319 2299419 - 2298829 - | ABC-type cobalt transport system, predicted permease component TERM 3626 2299120 - 2299110 - GR 73 -6.8 -4.18164 | AAGCGGCGAAAACAA GCTC AGC GAGC AATCCTTGCACAAAG TERM 3627 2299255 - 2299243 - GR 72 -7.7 -3.77023 | ACGAATTAATAAATA GGCAA CAG TTGCC GCAATAAACCACATG tenA 2300089 - 2299394 - | Transcriptional activator TenA TERM 3628 2300119 - 2300144 + H 95 -13.5 -3.30124 | opp_overlap 2300119 AAGAAAAATAAAAAA CCACTTTCTTT GCGC AAAGAAAGTGG TTGTAAACGATGGAA TERM 3629 2300144 - 2300119 - H 100 -13.5 -6.01725 | opp_overlap 2300119 AAGAAAAATAAAAAA CCACTTTCTTT GCGC AAAGAAAGTGG TTGTAAACGATGGAA Aflv_2321 2300408 - 2301601 + | SAM-dependent methyltransferase TERM 3630 2301623 - 2301602 - f 100 -14.5 -3.3782 | opp_overlap 2301602 CATTCACGTAAGTAA CAGGTTGGC GCAT GCCAACCTG TTTAAAAATGGACAA TERM 3631 2301602 - 2301623 + F 100 -14.5 -3.57144 | opp_overlap 2301602 CATTCACGTAAGTAA CAGGTTGGC GCAT GCCAACCTG TTTAAAAATGGACAA Aflv_2322 2301681 - 2301845 + | Uncharacterized protein contains two CXXC motifs TERM 3632 2301879 - 2301849 - T 95 -11.2 -4.7078 | opp_overlap 2301844 2301849 CGAATTAGTTAAAAA GCACTTCGCCCAAA CCG TTCATGCGAAGTGC TTTTCGTTTATGCGA TERM 3633 2301849 - 2301879 + T 79 -6.8 -4.61873 | opp_overlap 2301849, overlap 2301844 CGAATTAGTTAAAAA GCACTTCGCCCAAA CCG TTCATGCGAAGTGC TTTTCGTTTATGCGA Aflv_2323 2302423 - 2301887 - | hypothetical protein TERM 3634 2302528 - 2302486 - R 100 -15.8 -5.44721 | opp_overlap 2302488 2302494, overlap 2302487 2302488 2302494 AGTACGTGAAAAAAA TGTGAAAATCCCCTTTTCCA TGT CGGAAAAGGGGATTTTCATT ATTTCACTAAATATA TERM 3635 2302527 - 2302487 - R 100 -19.3 -3.85748 | opp_overlap 2302488 2302494, overlap 2302486 2302488 2302494 GTACGTGAAAAAAAT GTGAAAATCCCCTTTTCCA TGT CGGAAAAGGGGATTTTCAT TATTTCACTAAATAT TERM 3636 2302488 - 2302526 + r 100 -22.1 -3.9693 | opp_overlap 2302487 2302486 2302488 2302494, overlap 2302494 TACGTGAAAAAAATG TGAAAATCCCCTTTTCC ATGTC GGAAAAGGGGATTTTCA TTATTTCACTAAATA TERM 3637 2302526 - 2302488 - R 100 -22.8 -2.90726 | opp_overlap 2302488 2302494, overlap 2302487 2302486 2302494 TACGTGAAAAAAATG TGAAAATCCCCTTTTCCA TGT CGGAAAAGGGGATTTTCA TTATTTCACTAAATA TERM 3638 2302494 - 2302520 + r 100 -15.3 -4.62203 | opp_overlap 2302488 2302487 2302486 2302494, overlap 2302488 AAAAAAATGTGAAAA TCCCCTTTTCC ATGTC GGAAAAGGGGA TTTTCATTATTTCAC TERM 3639 2302520 - 2302494 - R 100 -16 -4.35095 | opp_overlap 2302494 2302488, overlap 2302488 2302487 2302486 AAAAAAATGTGAAAA TCCCCTTTTCCA TGT CGGAAAAGGGGA TTTTCATTATTTCAC Aflv_2324 2304191 - 2302527 - | Glycosidase TERM 3640 2302638 - 2302660 + g 71 -4.8 -4.74453 | overlap 2302641 CTCGCTATTTAATTT CAATGAATCG CAG CGATACATCG TTTTTCGGTCTGTTA TERM 3641 2304372 - 2304346 - R 93 -10.3 -5.08088 | opp_overlap 2304346 2304341 2304349 AACTGCGAACAAAAA TAAGCAACGAT TCATC ATCGTTGCCTA TTTTATACTTATAGT TERM 3642 2304346 - 2304372 + r 82 -8.1 -4.59069 | opp_overlap 2304346, overlap 2304341 2304349 AACTGCGAACAAAAA TAAGCAACGAT TCATC ATCGTTGCCTA TTTTATACTTATAGT TERM 3643 2304349 - 2304369 + r 72 -9.8 -2.92817 | opp_overlap 2304346, overlap 2304346 2304341 TGCGAACAAAAATAA GCAACGAT TCATC ATCGTTGC CTATTTTATACTTAT Aflv_2325 2306004 - 2304388 - | Permease of the major facilitator superfamily TERM 3644 2305620 - 2305598 - G 77 -10.6 -3.18452 | overlap 2305596 2305595 2305602 CCCGTAAATAAATCA CCAATGACGA TCA TCGCCATCGG CATCATAATACCTCC Aflv_2326 2306450 - 2306001 - | Transcriptional regulator, MarR family TERM 3645 2306491 - 2306473 - H 73 -7.6 -4.1347 | TTTTAACGATATAAA TATTTAAC ATA GTTAAATA TAAACGAAAGAAAAT TERM 3646 2306638 - 2306613 - g 71 -3.2 -4.95806 | opp_overlap 2306637 AAAGCATTAGAAAAA GCGATTGCGG AAATTA CCGAAATTGC CGAAGGATTTGGGCT TERM 3647 2307230 - 2307213 - g 85 -4.1 -5.44119 | overlap 2307214 TCTACTCGAAAAAAA CGAAGAA AATT TCCTCCG CAACCCGAAAAAGAT spoVR 2306580 - 2307998 + | Stage V sporulation protein R required for dehydratation of the spore core and assembly of the coat TERM 3648 2307999 - 2308019 + F 100 -9.8 -5.45652 | opp_overlap 2307996 2307992 2307999 AGAAAATATATATGA GCTACTGA ACACA TCAGTAGC TTTTTTATTGAAACT TERM 3649 2308019 - 2307999 - f 71 -9.8 -2.81462 | opp_overlap 2307999, overlap 2307996 2307992 AGAAAATATATATGA GCTACTGA ACACA TCAGTAGC TTTTTTATTGAAACT TERM 3650 2308594 - 2308559 - g 70 -2.5 -5.00138 | gap 1, opp_overlap 2308563, overlap 2308564 CAGGTAAAGCAAAAA TTGAAGCGGATGTGCG CGAAT CGCTCA-CCGCATTAA TGAAAAAATATGATA Aflv_2328 2308087 - 2309052 + | Membrane protease subunit, stomatin/prohibitin TERM 3651 2309104 - 2309116 + G 80 -6.3 -4.77165 | opp_overlap 2309099 AAGATAAACTGCCAA CGAAA TGG TTTCG TTTTCTTATCGGGGG Aflv_2329 2309049 - 2309981 + | Membrane protease subunit, stomatin/prohibitin TERM 3652 2309974 - 2309993 + T 100 -13.6 -3.89212 | opp_overlap 2309974 GGTTATTAGGACAAA CGCGCTGA GCTT TCAGCGCG TTTCATGTGTAAGTA TERM 3653 2309993 - 2309974 - T 100 -13.6 -3.99324 | opp_overlap 2309974 GGTTATTAGGACAAA CGCGCTGA GCTT TCAGCGCG TTTCATGTGTAAGTA adaB 2310471 - 2309986 - | O6-methylguanine-DNA methyltransferase TERM 3654 2310315 - 2310327 + g 77 -4.7 -4.94972 | CTAGCGATTGCATGA GAGGC TCC GCCAC TTTTTCGTTCTGATC Aflv_2331 2310545 - 2310796 + | hypothetical protein TERM 3655 2310798 - 2310821 + T 93 -11.1 -4.82901 | opp_overlap 2310798 2310804 AATATGATTATTAGA GCGAAAGGA ACGATC TCCTTTCGC TTTTTATACGACCGG TERM 3656 2310821 - 2310798 - T 81 -11.8 -2.84459 | opp_overlap 2310798, overlap 2310804 AATATGATTATTAGA GCGAAAGGAA CGAT CTCCTTTCGC TTTTTATACGACCGG Aflv_2332 2311604 - 2310825 - | Short-chain alcohol dehydrogenase TERM 3657 2310875 - 2310851 - G 70 -7.9 -3.63073 | GATACGTTTGAATAA GCGGATGTAAT ACG ATTTCATCCAC CAACATATGTTTCGG TERM 3658 2311620 - 2311590 - G 100 -12 -5.1287 | opp_overlap 2311592 TCTACATTCAAAAAA CAACTGATAAGGCA TTA CACCTTATCAGCTG TTAACGTATATACCC Aflv_2333 2313370 - 2311604 - | Phosphomannomutase TERM 3659 2311789 - 2311806 + g 70 -7.1 -3.74868 | opp_overlap 2311786 TATATTTCAACACGT TCGATTT TGGT AAATCGA TTGCTTCTTTTTCGC TERM 3660 2313430 - 2313420 - R 80 -8.2 -4.4261 | TTTTTAATACGAAAA GCGC AAA GCGC CCCAATTTCGCCTAA TERM 3661 2313646 - 2313624 - R 90 -8.4 -4.98255 | opp_overlap 2313624 CTTTAATGATAAAAA GGAGCTTCTT GTA AGGAAGCCCC TTTCTTGTTTAATGA TERM 3662 2313624 - 2313646 + r 87 -8.4 -4.60258 | opp_overlap 2313624 CTTTAATGATAAAAA GGAGCTTCTT GTA AGGAAGCCCC TTTCTTGTTTAATGA Aflv_2334 2314119 - 2313655 - | FOG: CBS domain protein bdbC 2314214 - 2314642 + | Thiol-disulfide oxidoreductase TERM 3663 2314909 - 2314898 - g 78 -2.2 -5.41746 | AATTTTGTAAAAAAA CGAC ACCA ATCG TTGCTCCACTTGCGC bdbA 2314639 - 2315103 + | Thiol-disulfide isomerase TERM 3664 2315129 - 2315101 - T 75 -9.7 -3.37761 | opp_overlap 2315107, overlap 2315107 TTTGAACAAATGGAA TAAAAAGCCTTCA TCA CGAAGGCTTTTTT ACATCACCCAAGCGT TERM 3665 2315123 - 2315107 - T 90 -8.7 -5.16151 | opp_overlap 2315107, overlap 2315101 CAAATGGAATAAAAA GCCTTCA TCA CGAAGGC TTTTTTACATCACCC TERM 3666 2315107 - 2315123 + T 88 -8 -5.08824 | opp_overlap 2315101 2315107 CAAATGGAATAAAAA GCCTTC ATCAC GAAGGC TTTTTTACATCACCC Aflv_2337 2315529 - 2315128 - | hypothetical protein TERM 3667 2316196 - 2316179 - g 70 -7.7 -3.62012 | overlap 2316175 AACAAAAAAAGGGAA CGATCGA AGCA CCGATCG GCCGTGATCGCCATC Aflv_2338 2315590 - 2316537 + | Pseudouridylate synthase, 23S RNA-specific TERM 3668 2316546 - 2316521 - f 95 -11.3 -4.96848 | gap 1, opp_overlap 2316539, overlap 2316539 TCGGTCACATAAAAA GAGGCA-CGTTA TTA TAACGCTGCCTC TCAGCTTGTCGACAA TERM 3669 2316548 - 2316574 + F 100 -19.6 -4.39568 | opp_overlap 2316539, overlap 2316539 TATAACGCTGCCTCT CAGCTTGTCGAC AAA GTCGACAAGCTG TTTTAATATATAGGT TERM 3670 2318077 - 2318034 - g 100 -16.4 -2.57358 | opp_overlap 2318042, overlap 2318037 2318042 ACAAATATCAAAATG TAATAAAATGGTTGTAAGAC AACT GTCTTACAACCATTTTGTCA ACAGTCTGAGAGGCA TERM 3671 2318074 - 2318037 - g 100 -15.9 -3.41195 | opp_overlap 2318042, overlap 2318034 2318042 AATATCAAAATGTAA TAAAATGGTTGTAAGAC AACT GTCTTACAACCATTTTG TCAACAGTCTGAGAG TERM 3672 2318042 - 2318069 + G 100 -15.8 -4.38154 | opp_overlap 2318037 2318034 2318042 CAAAATGTAATAAAA TGGTTGTAAGAC AACT GTCTTACAACCA TTTTGTCAACAGTCT TERM 3673 2318069 - 2318042 - g 100 -15.8 -4.77719 | opp_overlap 2318042, overlap 2318037 2318034 CAAAATGTAATAAAA TGGTTGTAAGAC AACT GTCTTACAACCA TTTTGTCAACAGTCT Aflv_2339 2316616 - 2318103 + | Transposase TERM 3674 2318087 - 2318112 + T 88 -11.3 -3.4493 | gap 1, opp_overlap 2318081 TTGTCAACAGTCTGA GAGGCA-CGTTA TTA TAACGCTGCCTC TTCATTCATATCTGT Aflv_2340 2319471 - 2318098 - | Putative Mg2+ and Co2+ transporter, TlyC/CorB family, contains CBS domains TERM 3675 2319293 - 2319303 + g 78 -2.4 -5.5074 | GTGATGACATGTTTG GCTG CTA CTGC TTTTTTGTTCCCTTC TERM 3676 2319467 - 2319440 - G 100 -15.6 -3.35639 | opp_overlap 2319436 2319463 AATATGTCCAACGAA CGTCCGCACGCA TGAA TGCGTGCGGATG TCACCTCCTATTGAT Aflv_2341 2320168 - 2319482 - | Predicted Zn-dependent protease TERM 3677 2320161 - 2320149 - G 80 -2.7 -5.48054 | ATTAAAATTAAAAAA TCCAT TGG ATGAA AAAACATACAATCAT TERM 3678 2320289 - 2320305 + r 72 -9.4 -3.08173 | opp_overlap 2320289 AACATCGAAAAAAAA CCTCGC AAATC GCGAGG TTAAATCAAATTCCT TERM 3679 2320305 - 2320289 - R 100 -10.1 -5.85178 | opp_overlap 2320289 AACATCGAAAAAAAA CCTCGCA AAT CGCGAGG TTAAATCAAATTCCT Aflv_2342 2321456 - 2320323 - | Zn-dependent hydrolase TERM 3680 2321478 - 2321491 + r 70 -3.1 -4.87665 | overlap 2321473 TCCACCTCTCCTTTA TACCT TATA GGGTA TTTTTATAGATAAAA Aflv_2343 2321737 - 2321510 - | Glutaredoxin Aflv_2344 2322596 - 2321820 - | Predicted permease TERM 3681 2322641 - 2322619 - R 79 -10.6 -3.2614 | opp_overlap 2322619 CACTCCTTATATGAA GCATCGGG ACATATG CCCGATGC TTGTTACGCTTTCCG TERM 3682 2322619 - 2322641 + r 83 -10.6 -3.70919 | opp_overlap 2322619 CACTCCTTATATGAA GCATCGGG ACATATG CCCGATGC TTGTTACGCTTTCCG Aflv_2345 2322872 - 2322645 - | Predicted redox protein, regulator of disulfide bond formation TERM 3683 2322788 - 2322803 + g 81 -5.4 -5.14563 | overlap 2322787 AAACTTGACCAGATT GGAGTG TATC CATTCC TTTTTTCGTGCGAAC Aflv_2346 2323279 - 2322884 - | Peroxiredoxin family protein Aflv_2347 2323857 - 2323276 - | Predicted redox protein, regulator of disulfide bond formation fused to Rhodanese-like domain Aflv_2348 2324177 - 2323869 - | Rhodanese-related sulfurtransferase TERM 3684 2324294 - 2324310 + r 76 -10.9 -2.72043 | opp_overlap 2324294, overlap 2324293 TTTCGCAAAAAAAAA CCTTGTG TGA CACAAGG ATTTAAACGAGCGTT TERM 3685 2324310 - 2324294 - R 100 -10.9 -6.06723 | opp_overlap 2324294 2324293 TTTCGCAAAAAAAAA CCTTGTG TGA CACAAGG ATTTAAACGAGCGTT Aflv_2349 2325530 - 2324313 - | hypothetical protein TERM 3686 2325016 - 2325048 + g 76 -2.7 -5.30616 | opp_overlap 2325016 2325022, overlap 2325017 CGAATATCGTTAAAC TCAATATGTTGAACA ACA TGGTCAGCGTGTTGC TTTTTCTTTAAATCA TERM 3687 2325695 - 2325668 - RH 93 -11.4 -4.4891 | opp_overlap 2325672, overlap 2325672 TCTATGATGATAAAA CAAAGCATGCCA AGTG CGGCATGCTTTA TCGGTTTAACAAACT TERM 3688 2325691 - 2325672 - RH 93 -10 -4.80453 | opp_overlap 2325672, overlap 2325668 TGATGATAAAACAAA GCATGCCA AGTG CGGCATGC TTTATCGGTTTAACA TERM 3689 2325672 - 2325691 + rH 83 -9.3 -4.02132 | opp_overlap 2325672 2325668 TGATGATAAAACAAA GCATGCC AAGTGC GGCATGC TTTATCGGTTTAACA prkA 2327783 - 2325693 - | Predicted Ser/Thr protein kinase TERM 3690 2327479 - 2327490 + gH 71 -2.2 -5.10163 | opp_overlap 2327467 GAATGAGCAGACTGA GCTA CCCA TGGC TTTTCTTTTACGATT Aflv_2351 2327755 - 2327847 + | Uncharacterized conserved short protein TERM 3691 2327842 - 2327875 + Tr 70 -9.7 -2.52795 | opp_overlap 2327844, overlap 2327852 AAGCCAGAAGTAAAA AATTAAGCGACTTTC AAAT GAAAGTCGCTTAAAA TACATTCGGGAAGTT TERM 3692 2327873 - 2327844 - TR 100 -16.7 -5.32944 | opp_overlap 2327842 2327852 GCCAGAAGTAAAAAA TTAAGCGACTTTC AAAT GAAAGTCGCTTAA AATACATTCGGGAAG cspR 2328352 - 2327870 - | Predicted rRNA methylase (SpoU class) Aflv_2353 2329224 - 2328355 - | Cell wall-associated hydrolase, NLP/P60 family Aflv_2354 2330407 - 2329271 - | Uncharacterized Fe-S protein TERM 3693 2330342 - 2330321 - G 71 -2.1 -5.15969 | overlap 2330323 TTTTAACTCAAAAAA CGGATCAGC ACTT GCAAAACCG ATTTTATCAATGCCG Aflv_2355 2330429 - 2331130 + | Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta TERM 3694 2331195 - 2331159 - T 100 -5.9 -5.96894 | opp_overlap 2331137 AGCGAAATAAAAAAA CGCAATGCCCCGTTC ATCTTCG AAACGAAACACTGCG TTGTCCCCGTATGTA TERM 3695 2331500 - 2331489 - T 100 -5.8 -5.98675 | opp_overlap 2331489 TACAAAAATAAAAAA CAGG AATC CCTG TTTCGTAATTACGTT exuR 2332944 - 2331916 - | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) araQ 2333874 - 2333035 - | ABC-type sugar transport system, permease component araP 2334815 - 2333889 - | ABC-type sugar transport system, permease component TERM 3696 2334843 - 2334868 + r 79 -11.2 -2.72434 | opp_overlap 2334843, overlap 2334842 2334841 2334836 2334845 CCAAAAATCATAGTA GGGGAAGGGA ATGAAA TCCCTTCCTC GTATGTTTTATTGAC TERM 3697 2334845 - 2334866 + r 73 -10.2 -2.89379 | opp_overlap 2334843, overlap 2334843 2334842 2334841 2334836 AAAAATCATAGTAGG GGAAGGGA ATGAAA TCCCTTCC TCGTATGTTTTATTG araN 2336225 - 2334876 - | ABC-type sugar transport system, periplasmic component TERM 3698 2336265 - 2336323 + r 85 -7 -5.12785 | opp_overlap 2336317, overlap 2336267 2336317 ACGTTATAATTCTTT TAGTTTTCTTTGTAGTAGCGGCCAAT CCCCAAC ATTTTTCGCTATTACAAAGGAAACTC TTTCTTTTTTCATTC TERM 3699 2336267 - 2336321 + r 89 -9.6 -4.15047 | opp_overlap 2336317, overlap 2336265 2336317 GTTATAATTCTTTTA GTTTTCTTTGTAGTAGCGGCCAAT CCCCAAC ATTTTTCGCTATTACAAAGGAAAC TCTTTCTTTTTTCAT TERM 3700 2336317 - 2336327 + r 78 -4 -5.30155 | opp_overlap 2336317, overlap 2336267 2336265 TTCGCTATTACAAAG GAAA CTC TTTC TTTTTTCATTCATCA Aflv_2360 2337734 - 2336349 - | Beta-glucosidase Aflv_2361 2338538 - 2338134 - | XerD related protein TERM 3701 2338564 - 2338534 - G 100 -15.6 -6.04324 | opp_overlap 2338534 2338563 CTAAAAAACAAAAAA GCCAATGCTCTGAA TTG CTCAAAGCATTGGC TTTAAAGGCTTTTCG TERM 3702 2338534 - 2338564 + g 100 -12.7 -3.60818 | opp_overlap 2338534, overlap 2338563 CTAAAAAACAAAAAA GCCAATGCTCTGA ATTGC TCAAAGCATTGGC TTTAAAGGCTTTTCG TERM 3703 2338934 - 2338954 + rH 75 -9.7 -3.31263 | overlap 2338936 ACTCGAACCCGCGAC CCCCACCTT GGC AAGGTGGTG TTCTACCACTGAACT TERM 3704 2338936 - 2338952 + rH 79 -10.9 -3.22475 | overlap 2338934 TCGAACCCGCGACCC CCACCTT GGC AAGGTGG TGTTCTACCACTGAA TERM 3705 2339189 - 2339209 + rH 70 -8.3 -3.36671 | opp_overlap 2339182 GAATCGAACCCACAC CGGAGGTTT TGG AGACCTCTG TTCTACCATTAAACT TERM 3706 2341422 - 2341435 + rH 72 -4.5 -4.7254 | TTCGCCTTACGGCTT CGCAG AGAC CTGTG TTTTTGATAAACAGT TERM 3707 2341918 - 2341936 + rH 71 -6 -4.21194 | overlap 2341914 CTTAGGCTTTCGGTG CAGAGG ATTCTCA CCTCTG TTTTCGCTACTCACA TERM 3708 2342955 - 2342974 + rH 89 -12.2 -3.66803 | opp_overlap 2342954 2342953 GAGTGTCCTACAACC CCAAGAGG CAAG CCTCTTGG TTTGGGCTGTTCCCG TERM 3709 2343375 - 2343359 - RH 82 -8.7 -4.23486 | overlap 2343356 2343360 AATCAGCTAAAATAA CGAGGGA TAT TCCCTCA AAACTAAACGAAGCG TERM 3710 2343374 - 2343360 - RH 75 -10 -3.13007 | overlap 2343359 2343356 ATCAGCTAAAATAAC GAGGGA TAT TCCCTC AAAACTAAACGAAGC TERM 3711 2343630 - 2343662 + rH 74 -4.8 -4.68384 | gap 1, overlap 2343620 2343600 2343634 GTCGACGTGCACGCA CGTCTCGTCGAAAGC TTGC GCTTCCGTCG-GATG TTTTCTTGACTACGT TERM 3712 2343992 - 2344004 + rH 73 -7.7 -3.86194 | TTGGCTCCCCCTCGC GGGTT CGC AACCC TTTGTACCGCCCATT TERM 3713 2345103 - 2345118 + rH 72 -9 -3.32343 | overlap 2345094 GTTATCCGGTATTAG CACCGA TTTC TCGGTG TTATCCCCGTCTACA TERM 3714 2345330 - 2345344 + rH 79 -3.5 -5.37593 | TCAAGGAACATCTTT GTCGT TTTTC GCGAC TTTTTTAATTTAGCA Aflv_2362 2346379 - 2345417 - | Permease of the drug/metabolite transporter (DMT) superfamily sapB 2346368 - 2347045 + | Uncharacterized membrane protein Aflv_2364 2347108 - 2347698 + | Stand-alone HD-GYP domain protein Aflv_2365 2348032 - 2347739 - | Transcriptional regulator, ArsR family TERM 3715 2348128 - 2348108 - R 71 -3.9 -5.00616 | overlap 2348109 2348111 GGGCTGCCCAAAAAA CCACAGGGT CAG ACCCCGCAA CACAATATATAGGAC Aflv_2366 2349565 - 2348228 - | Hemolysin-like protein containing CBS domain TERM 3716 2348860 - 2348870 + g 78 -5.4 -5.00895 | TTTCCAAACTGTCCG CGAT TGA ATCG TTTTTATCTAATGCG TERM 3717 2349527 - 2349515 - G 80 -2.6 -5.4833 | TGATGCAACAAAAAA CGCC GTCAA GGCA ATTAAAATGCCAACC Aflv_2367 2350114 - 2349644 - | Transcriptional regulator, MerR family TERM 3718 2350303 - 2350322 + r 82 -10.8 -3.48276 | opp_overlap 2350303 GTTTCCTCCACACAA GAGACTGA ATAT TCAGTCTC TTGTGTAGGAAGGGA TERM 3719 2350322 - 2350303 - R 82 -10.8 -3.48276 | opp_overlap 2350303 GTTTCCTCCACACAA GAGACTGA ATAT TCAGTCTC TTGTGTAGGAAGGGA TERM 3720 2351965 - 2351983 + r 72 -9.6 -3.07192 | TAAAGGAACATGCGT GGATCGGT GAG ATCGATCC TCTATTAGAAGCGTT Aflv_2368 2355099 - 2353579 - | Uncharacterized conserved protein UPF0236 family TERM 3721 2354339 - 2354365 + g 73 -7.3 -4.08485 | gap 1, overlap 2354359 TGGAGGTAGTGGCGC CGGTTCACGAGC TCGA GCT-GCGAACCG TTTCGTTTCCATCCC TERM 3722 2355044 - 2355098 + g 100 -18.7 -3.20382 | gap 1, opp_overlap 2355069 CTACCGCGCTTCGCT TGGTGGCCCCGACGAGGGTCACGAAC AAAA GTTCGCAACCCTCGTCGGGGA-ATCA TTCCTGAATGTCACC TERM 3723 2355549 - 2355566 + G 72 -9.9 -2.82623 | TTGTGTGGATGAGTT TGCCCTT CGCA AAGGGCA TCATTATGCGACAAG TERM 3724 2356228 - 2356268 + G 70 -7.7 -3.65351 | overlap 2356232 2356236 ATTAGAAACCGAGCG TTAATTTGGTCATCCCTGA CTT TCGGTGATGAACAAATAAA TTTACATAAAAGTAA TERM 3725 2356296 - 2356280 - g 71 -4.5 -4.59081 | opp_overlap 2356280 2356291, overlap 2356269 TAAATTTACATAAAA GTAAAAT TTC ACTTTAC ATTTTGCAAAGTTTG Aflv_2369 2355106 - 2356341 + | Transposase Aflv_2370 2356354 - 2357220 + | ABC-type multidrug transport system, ATPase component Aflv_2371 2357229 - 2357945 + | Uncharacterized membrane protein TERM 3726 2358072 - 2358089 + T 73 -8.5 -3.66589 | opp_overlap 2358070 2358063 2358068 2358072 TTACAACTGAACACA CAAACGA TCGA TCGTTTG TTCTGGTTTCTGGTT Aflv_2372 2358545 - 2358057 - | Transposase Aflv_2373 2359102 - 2358584 - | Transposase TERM 3727 2358614 - 2358628 + g 80 -2.8 -5.4659 | TACTTCAGGGAAGGT GATTTC GAC GAATTC TTTTTGTTTCTCTTC xre 2359342 - 2359530 + | Predicted transcriptional regulator, xre family TERM 3728 2359605 - 2359616 + F 81 -3 -5.55698 | TTTTTATATTGTCTA CAAT CACC ATTG TTTTTTTAAATTATA TERM 3729 2359674 - 2359660 - f 89 -4.4 -5.69793 | AGACGAAAGAAAAAA TTTAAT ACA ATTAAA GGTTAGTAAAGTCGT Aflv_2375 2360405 - 2360935 + | Transposase Aflv_2376 2360950 - 2361465 + | Transposase TERM 3730 2361876 - 2361908 + F 100 -14.4 -5.36441 | opp_overlap 2361872 GTTAAAAATATGGTA TCCTTTCTAGCGAA TACTC TTCGTTAGAAAGGA TTTTTTCTATGGAAA Aflv_2377 2361917 - 2363170 + | Transposase TERM 3731 2363236 - 2363202 - T 100 -15.2 -4.89852 | opp_overlap 2363209 2363214, overlap 2363203 TTAGATTCATAAAAA CGCCAAATAACACTCT CCA AGAGGGTTATTTGGCA TGCCTAAAACATGTG TERM 3732 2363235 - 2363203 - T 100 -16.5 -3.53188 | opp_overlap 2363209 2363214, overlap 2363202 TAGATTCATAAAAAC GCCAAATAACACTCT CCA AGAGGGTTATTTGGC ATGCCTAAAACATGT TERM 3733 2363601 - 2363642 + T 73 -7.3 -4.06786 | overlap 2363605 2363607 CTCATTCGCCCTTTA CTCTTTGACTAGTTGAGCA CTAG TGCTCAACTAGCCTATTAG TTTATAATATTAAGT TERM 3734 2363605 - 2363638 + T 83 -11.1 -3.64902 | overlap 2363601 2363607 TTCGCCCTTTACTCT TTGACTAGTTGAGCA CTAG TGCTCAACTAGCCTA TTAGTTTATAATATT TERM 3735 2363607 - 2363636 + T 95 -13.7 -3.38986 | overlap 2363605 2363601 CGCCCTTTACTCTTT GACTAGTTGAGCA CTAG TGCTCAACTAGCC TATTAGTTTATAATA TERM 3736 2364251 - 2364303 + T 76 -7.3 -4.18058 | opp_overlap 2364266, overlap 2364232 2364231 2364252 2364255 2364269 CCGCGCTATCGCTTG GTGGCCTTTTAAAAACAATTACGAC GCT GTCCTAATTATTTTTAAAAGGTAAA TTTTCGGGTCTCATT TERM 3737 2364252 - 2364302 + T 79 -10.8 -3.10112 | opp_overlap 2364266, overlap 2364232 2364231 2364251 2364255 2364269 CGCGCTATCGCTTGG TGGCCTTTTAAAAACAATTACGAC GCT GTCCTAATTATTTTTAAAAGGTAA ATTTTCGGGTCTCAT TERM 3738 2364255 - 2364299 + T 95 -14.7 -2.75845 | opp_overlap 2364266, overlap 2364231 2364252 2364251 2364269 GCTATCGCTTGGTGG CCTTTTAAAAACAATTACGAC GCT GTCCTAATTATTTTTAAAAGG TAAATTTTCGGGTCT Aflv_2378 2365164 - 2364337 - | Transposase Aflv_2379 2365493 - 2365203 - | Transposase TERM 3739 2366075 - 2366063 - g 86 -3.3 -5.66989 | opp_overlap 2366063 2366070, overlap 2366052 GAAACACGAAAAAAA CGTGT GGG ACTCG TTGTGTCTTCTGTTG Aflv_2380 2365569 - 2366129 + | Transposase TERM 3740 2366127 - 2366156 + F 73 -7.3 -3.98236 | GTTCTTTCCGCTACC TAGGGCATTTT CTATGACC GAAATGCCCTA TTTGTGCTGGGCTTT TERM 3741 2366513 - 2366497 - g 71 -4.5 -4.68846 | ATCAATAAAGCAAAA TTAGATT TAG AATCCAA GAAGGTAGAACTGTC TERM 3742 2366725 - 2366700 - g 77 -8.4 -4.0031 | gap 1 ATTTTTAGTAAATAA GGGCAGTCATT CTAAC AATGAC-GCCC TCCCACTGAACTAAT Aflv_2381 2366350 - 2366739 + | hypothetical protein TERM 3743 2367015 - 2367043 + T 100 -13.3 -4.49167 | opp_overlap 2367021, overlap 2367021 CCGGTATGCTCCATC AAAAAACCCTTGC ATC GCAAGGGTTTTTC TTTTACTCTTCTGTT TERM 3744 2367037 - 2367021 - T 100 -12.3 -5.14563 | opp_overlap 2367015 2367021 TGCTCCATCAAAAAA CCCTTGC ATC GCAAGGG TTTTTCTTTTACTCT TERM 3745 2367021 - 2367037 + T 100 -12.3 -5.52079 | opp_overlap 2367021, overlap 2367015 TGCTCCATCAAAAAA CCCTTGC ATC GCAAGGG TTTTTCTTTTACTCT sspH 2367225 - 2367046 - | Small acid-soluble spore protein Aflv_2383 2367418 - 2368296 + | Potassium channel protein Aflv_2384 2368725 - 2368285 - | hypothetical protein TERM 3746 2368547 - 2368537 - G 73 -5.4 -4.62471 | TGGAAGGCGTAAAAA TTGG TAC CCAA CATCATCCGCCATCT TERM 3747 2368641 - 2368655 + g 70 -2.9 -4.94972 | opp_overlap 2368641 ATTCCTGTTCTAACA CATTT AATAA AAATG TTTTTCCTTCTAATG TERM 3748 2368758 - 2368731 - R 100 -15 -5.42259 | opp_overlap 2368731 TCATGCCCAAAAAAA GAGCTTTCCCTG CACC CAGGAAAAGCTC TTTTTTTCATTATTT TERM 3749 2368731 - 2368758 + r 100 -12.8 -5.73672 | opp_overlap 2368731 TCATGCCCAAAAAAA GAGCTTTCCCTG CACC CAGGAAAAGCTC TTTTTTTCATTATTT pgi 2370192 - 2368768 - | Glucose-6-phosphate isomerase TERM 3750 2369032 - 2369046 + g 77 -8.6 -4.00443 | TTCAAACGCTTTTGT GTTGAC AAA GTCAAC TGTTTTTCCTGCTAA Aflv_2386 2371388 - 2370228 - | Uncharacterized oxidoreductase, Fe-dependent alcohol dehydrogenase family TERM 3751 2370672 - 2370662 - G 73 -5.4 -4.73682 | TTCCACAATATAAAA TCGT TTC ACGA TAGTCGACATTTTGT Aflv_2387 2371513 - 2371764 + | hypothetical protein TERM 3752 2371768 - 2371797 + TF 100 -13.7 -6.15259 | opp_overlap 2371770, overlap 2371770 TCAAGAACATAAACA AACAACTCACCGA TCGT TCGGTGAGTTGTA TTTTTTTTTCGCTTC TERM 3753 2371795 - 2371770 - Tf 100 -16.3 -4.72277 | opp_overlap 2371768 2371770 AAGAACATAAACAAA CAACTCACCGA TCGT TCGGTGAGTTG TATTTTTTTTTCGCT TERM 3754 2371770 - 2371795 + TF 100 -16.3 -4.70383 | opp_overlap 2371770, overlap 2371768 AAGAACATAAACAAA CAACTCACCGA TCGT TCGGTGAGTTG TATTTTTTTTTCGCT Aflv_2388 2372277 - 2371774 - | Predicted RNA binding protein (contains ribosomal protein S1 domain) TERM 3755 2371825 - 2371835 + gF 71 -4 -4.7497 | TTCCGTAATCCATTT TTCA AGT TGAA TTTTTAATGGCTGAA Aflv_2389 2372249 - 2372614 + | Predicted transcriptional regulator, xre family TERM 3756 2372633 - 2372602 - TR 83 -9.6 -3.86372 | opp_overlap 2372599 2372610, overlap 2372610 TGAACTCAAATACAA CAAAGAAAGCTGAC GGCC GTCAGCTTTTTTTA TAGTCGTTCAAGAAA TERM 3757 2372625 - 2372610 - TR 89 -9 -4.77442 | opp_overlap 2372599 2372610, overlap 2372602 AATACAACAAAGAAA GCTGAC GGCC GTCAGC TTTTTTTATAGTCGT TERM 3758 2372610 - 2372625 + Tr 100 -9 -5.67967 | opp_overlap 2372610 2372602, overlap 2372599 AATACAACAAAGAAA GCTGAC GGCC GTCAGC TTTTTTTATAGTCGT Aflv_2390 2373797 - 2372631 - | Aspartate aminotransferase alaR 2374300 - 2373797 - | Transcriptional regulator (Lrp/AsnC family) TERM 3759 2374386 - 2374368 - R 74 -5.3 -4.79949 | gap 1, opp_overlap 2374368 2374385 TTTTCAAAAAAAGAA GCAAGGCG ACAT CGC-TTGC TGTTACCGCTTTTTT TERM 3760 2374385 - 2374395 + r 73 -2.4 -5.24129 | opp_overlap 2374368, overlap 2374368 AAGGCGACATCGCTT GCTG TTA CCGC TTTTTTATGACACCA Aflv_2392 2374901 - 2374389 - | Cu/Zn superoxide dismutase Aflv_2393 2375176 - 2374955 - | hypothetical protein Aflv_2394 2375202 - 2375693 + | hypothetical protein TERM 3761 2376505 - 2376519 + G 87 -8.6 -4.46404 | CAGCAGTCATCGCGA TGACAG GAG CTGTCA TTTTAATGTTGATTG Aflv_2395 2375715 - 2377040 + | Arsenical pump family protein TERM 3762 2377068 - 2377042 - f 83 -9.5 -3.91897 | opp_overlap 2377044, overlap 2377044 TTCGTTACTTATAAA CACGCTCAAAG CTCGC CTTTGAGCGTT TTTTTCTTTCCATCA TERM 3763 2377066 - 2377044 - f 89 -12.1 -3.5511 | opp_overlap 2377044, overlap 2377042 CGTTACTTATAAACA CGCTCAAAG CTCGC CTTTGAGCG TTTTTTTCTTTCCAT TERM 3764 2377044 - 2377066 + F 100 -12.1 -5.96894 | opp_overlap 2377042 2377044 CGTTACTTATAAACA CGCTCAAAG CTCGC CTTTGAGCG TTTTTTTCTTTCCAT TERM 3765 2377297 - 2377276 - g 73 -3.7 -5.03945 | opp_overlap 2377281, overlap 2377281 GAAGAAGTACAAAAA CAACTCCAA TCGA TTGGTATTG AATCTGAAATAAAAA TERM 3766 2377360 - 2377370 + G 73 -8.2 -3.62597 | opp_overlap 2377343 2377360 2377361, overlap 2377360 CTTTCTCCCAAAAAA GGCG AGT CGCC TTGTTGCCAACTCAC TERM 3767 2377370 - 2377360 - g 100 -8.2 -5.00616 | opp_overlap 2377360 2377360, overlap 2377343 2377361 CTTTCTCCCAAAAAA GGCG AGT CGCC TTGTTGCCAACTCAC Aflv_2396 2377060 - 2377407 + | hypothetical protein Aflv_2397 2377544 - 2377395 - | hypothetical protein Aflv_2398 2377656 - 2378240 + | hypothetical protein TERM 3768 2378251 - 2378276 + T 93 -6.9 -5.4433 | gap 1, opp_overlap 2378251, overlap 2378239 2378238 CATAACGAAGAAAAA GGAAGCTCGGTT ATA ATCCGA-CTTCC TTTTTCTTTATATAT TERM 3769 2378276 - 2378251 - T 89 -6.9 -5.2204 | gap 1, opp_overlap 2378239 2378238 2378251 CATAACGAAGAAAAA GGAAGCTCGGTT ATA ATCCGA-CTTCC TTTTTCTTTATATAT Aflv_2399 2378962 - 2378261 - | hypothetical protein TERM 3770 2379051 - 2379034 - R 100 -7.7 -6.24157 | opp_overlap 2379034 AGCTACAAAAAAAAA CCTCCAC GATT GTGAAGG TTTAAAACATCCGAT Aflv_2400 2379391 - 2379053 - | hypothetical protein Aflv_2401 2379561 - 2379433 - | Uncharacterized conserved protein contain two CXXC motifs TERM 3771 2379654 - 2379632 - R 100 -7.7 -6.23545 | opp_overlap 2379632 TGTAAAGAAAAAAAA CGAGCGAAA AATTG CTCCGCTCG TTTTTATATGAACTT TERM 3772 2379632 - 2379654 + r 77 -4.8 -4.98522 | opp_overlap 2379632 TGTAAAGAAAAAAAA CGAGCGAA AAATTGC TCCGCTCG TTTTTATATGAACTT Aflv_2402 2380890 - 2379658 - | NADH dehydrogenase, FAD-containing subunit TERM 3773 2380596 - 2380612 + g 74 -9.5 -3.29216 | overlap 2380599 ACGGCTCATGATTTT GAAGCAA CAC TTGCTTC TGTTCTAAGTTGATT TERM 3774 2380994 - 2380981 - H 85 -3.9 -5.62219 | opp_overlap 2380988 2380989 AATAGACCAAAAAAA TACAA CGTT TTGTA ACAAAGTTGTCATTT Aflv_2403 2381149 - 2382174 + | Thioredoxin reductase TERM 3775 2382168 - 2382214 + T 100 -20.5 -4.4078 | gap 1, opp_overlap 2382175, overlap 2382172 TTCCACATCGATGTT TGAATAATTCGAAGCCCCTCTC TTAA GAGAGGGGCTTCGAATGAT-CA TTTTCATTCGCCACA TERM 3776 2382172 - 2382211 + T 100 -22.4 -3.18268 | opp_overlap 2382175, overlap 2382168 ACATCGATGTTTGAA TAATTCGAAGCCCCTCTC TTAA GAGAGGGGCTTCGAATGA TCATTTTCATTCGCC TERM 3777 2382208 - 2382175 - T 100 -24.1 -3.62597 | opp_overlap 2382172 2382168 TCGATGTTTGAATAA TTCGAAGCCCCTCTC TTAA GAGAGGGGCTTCGAA TGATCATTTTCATTC Aflv_2404 2382525 - 2382190 - | Uncharacterized integral membrane protein Aflv_2405 2382881 - 2382519 - | Fe-S cluster assembly scaffold protein dapF 2383767 - 2382898 - | Diaminopimelate epimerase Aflv_2407 2383898 - 2384581 + | Uncharacterized conserved protein, contains two CXXC motifs TERM 3778 2384586 - 2384569 - T 100 -9.8 -5.7946 | TCGTGAAGAAAAAAA GGGGGC ACAATA GCCCCC TAAAACATGGGATTT Aflv_2408 2384834 - 2384586 - | Uncharacterized protein conserved in bacteria, Cys rich Aflv_2409 2384908 - 2386059 + | NADH dehydrogenase, FAD-containing subunit TERM 3779 2386178 - 2386195 + T 90 -9.1 -5.10497 | opp_overlap 2386175 2386178 TTGTAAAATGAATGA GGGCGAG TTAC TTCGCCC TTTTTTCAATCGCTT Aflv_2410 2386493 - 2386185 - | hypothetical protein Aflv_2411 2386580 - 2386822 + | Thioredoxin-like protein TERM 3780 2386858 - 2386832 - T 90 -8.8 -4.87626 | gap 1, opp_overlap 2386832 2386827 TTCTAACAGCAAAAA GGGTGTCCCAA AAATGA TTGGG-CACCC TTTTCATTTCTCTAA TERM 3781 2386832 - 2386858 + T 87 -8.8 -4.65153 | gap 1, opp_overlap 2386832, overlap 2386827 TTCTAACAGCAAAAA GGGTGTCCCAA AAATGA TTGGG-CACCC TTTTCATTTCTCTAA thrB 2387776 - 2386862 - | Homoserine kinase TERM 3782 2387479 - 2387463 - G 93 -12.3 -3.14878 | overlap 2387461 2387473 TTCGCCAACTCAATA GCAGCCA CAA TGGCTGC AGCACTGCTACCAAG thrC 2388831 - 2387773 - | Threonine synthase TERM 3783 2388700 - 2388711 + g 73 -5.8 -4.57073 | opp_overlap 2388700 TGTTTTAACATATAA CTCG ATAC CGAG TTTTTCAGACAAATG hom 2390186 - 2388831 - | Homoserine dehydrogenase TERM 3784 2390296 - 2390283 - R 100 -8.1 -6.32976 | AAAAAAATAAAAAAA GAGCC CTTT GGCTC TACACAGGAGTATAA Aflv_2415 2391258 - 2390296 - | 2-hydroxyacid dehydrogenase TERM 3785 2391087 - 2391045 - G 73 -8.5 -3.64487 | gap 1, overlap 2391084 CTACATTCGCAACAA CGCGTAGATGAGG-GCTGTT TTTT AATAGCTCCTCATCAATGCG ATCAGATAGCATCGT Aflv_2416 2392319 - 2391306 - | Spore coat-associated protein TERM 3786 2392419 - 2392403 - g 70 -2.9 -4.99972 | overlap 2392405 AGAAAATAGGAAAAA TGGAGCA AAT CGCTCGA CAATGGCTCGCAAAT Aflv_2417 2392378 - 2392875 + | Phosphatidylglycerophosphatase A-like protein TERM 3787 2392972 - 2392927 - T 100 -11.9 -5.27779 | opp_overlap 2392929 2392931, overlap 2392931 TGTAATACTAAAAAA GCAAGGCTAACCCCAAGACGC ATTT GCGTTTTAGGGTTAGCCTCTT TTATATACGTTCCAT TERM 3788 2392929 - 2392970 + T 100 -16.7 -4.57474 | opp_overlap 2392927 2392931, overlap 2392931 TAATACTAAAAAAGC AAGGCTAACCCCAAGACGC ATTT GCGTTTTAGGGTTAGCCTC TTTTATATACGTTCC TERM 3789 2392931 - 2392968 + T 100 -19.3 -3.89301 | opp_overlap 2392927 2392931, overlap 2392929 ATACTAAAAAAGCAA GGCTAACCCCAAGACGC ATTT GCGTTTTAGGGTTAGCC TCTTTTATATACGTT TERM 3790 2392968 - 2392931 - T 100 -19.3 -3.9735 | opp_overlap 2392931 2392929, overlap 2392927 ATACTAAAAAAGCAA GGCTAACCCCAAGACGC ATTT GCGTTTTAGGGTTAGCC TCTTTTATATACGTT Aflv_2418 2393764 - 2392973 - | Predicted sugar phosphatase of the HAD superfamily Aflv_2419 2394471 - 2393836 - | Transcriptional regulator, DeoR family Aflv_2420 2394959 - 2394519 - | hypothetical protein Aflv_2421 2395037 - 2395339 + | hypothetical protein Aflv_2422 2395377 - 2395649 + | hypothetical protein TERM 3791 2395654 - 2395674 + T 100 -14.1 -5.22039 | opp_overlap 2395654 CATATTCATAAAAAA TAGGTCAGG TGT CCTGACCTA TTTTTTCACTTTCCG TERM 3792 2395674 - 2395654 - T 100 -14.1 -5.29782 | opp_overlap 2395654 CATATTCATAAAAAA TAGGTCAGG TGT CCTGACCTA TTTTTTCACTTTCCG Aflv_2423 2395956 - 2395672 - | hypothetical protein Aflv_2424 2395984 - 2396691 + | hypothetical protein TERM 3793 2396698 - 2396731 + T 79 -8.3 -4.01737 | gap 1 ATGCAATAAATGGGG GAGGATGTCCT-GC TTACATC GTGAGGACATCCTC TTTCGTATTGTTACT lipA 2397656 - 2396742 - | Lipoic acid synthetase (lipoate synthase) Aflv_2426 2397782 - 2398753 + | Membrane protein TERM 3794 2398768 - 2398749 - T 100 -8.6 -5.54894 | opp_overlap 2398749 AACGCATGAAAAAAA GATGAGGA TTTC CCCTCATC TTTTTTATGATTGAC TERM 3795 2398749 - 2398768 + T 93 -7.9 -5.37345 | opp_overlap 2398749 AACGCATGAAAAAAA GATGAGG ATTTCC CCTCATC TTTTTTATGATTGAC Aflv_2427 2398877 - 2398773 - | hypothetical protein Aflv_2428 2400388 - 2398877 - | Na+-dependent transporters of the SNF family Aflv_2429 2401321 - 2400572 - | hypothetical protein Aflv_2430 2401759 - 2401373 - | hypothetical protein TERM 3796 2401644 - 2401660 + gr 73 -6.6 -4.20084 | GCTGTAAACGGTTCT CCGTTA ATCCA TAACGG TTTTACCTCAATCAT Aflv_2431 2403153 - 2401729 - | Esterase TERM 3797 2401915 - 2401905 - GR 75 -3.2 -5.15167 | GATGATGAATAAAAA TGCG GCG CACA TGTGCTTGACCATCT Aflv_2432 2403967 - 2403143 - | Predicted permease Aflv_2433 2404831 - 2403974 - | hypothetical protein TERM 3798 2404107 - 2404125 + g 71 -8.2 -3.41023 | overlap 2404104 TAAATATGTTCACAT TTCGTTTG TAA CAGACGAA TATGTTTTACCCATT TERM 3799 2404864 - 2404894 + H 73 -9.7 -3.10244 | opp_overlap 2404864, overlap 2404861 TAACATACAAAAAAA GCCGATGACCTGC ATCAC GCAGATCATCAGC TCGTTTATTACCCAA TERM 3800 2404894 - 2404864 - H 100 -14.8 -5.80248 | opp_overlap 2404864 2404861 TAACATACAAAAAAA GCCGATGACCTGCA TCA CGCAGATCATCAGC TCGTTTATTACCCAA TERM 3801 2405606 - 2405588 - g 71 -3 -5.0538 | CGCGATCTTAAAAAA GGCCATGA GCA TCTTCGCC AAAAACCAGAAGTAA Aflv_2434 2405325 - 2405621 + | Transposase Aflv_2435 2405660 - 2406490 + | Transposase TERM 3802 2406542 - 2406568 + T 77 -10.2 -3.28712 | overlap 2406527 2406526 2406548 CTTTCCTCTTGAGGA GGGGAAGGGTTT ACC AAACCGTTCTCC TTCTCAAGAGGCCAC TERM 3803 2406764 - 2406776 + T 70 -3.3 -4.94811 | opp_overlap 2406751 AGCCCCATGTGGCAT AAGGG GTA CCCTG TTTGTTTCTTTTTAC Aflv_2436 2408595 - 2406829 - | Predicted Zn peptidase TERM 3804 2407189 - 2407199 + g 73 -5.4 -4.7329 | opp_overlap 2407189 ATTACTTACAAAATT GGAT TGA ATCC TTTTTAACTGCTTTT TERM 3805 2407965 - 2407983 + g 73 -10.4 -2.50291 | opp_overlap 2407982, overlap 2407948 2407964 2407968 2407982 TCAAATTATTGTTTG GAATTGCT GAC AGCAATTC ATTGATAAAATGATT Aflv_2437 2409151 - 2408615 - | hypothetical protein Aflv_2438 2409616 - 2409335 - | hypothetical protein ripX 2410551 - 2409628 - | Site-specific recombinase XerC TERM 3806 2410150 - 2410164 + g 74 -4.2 -5.055 | overlap 2410135 CTCGGGATCGACTCC CCGG CTTTGCA CCGG TTTTTTCCGCATTCG TERM 3807 2410811 - 2410850 + r 80 -2.2 -5.57888 | opp_overlap 2410811, overlap 2410828 CATTAAAAAAATAGA GGCAAGCACACATT AGCCATGTTTAA TATGTTTGCTTGCC TTTTGTTTTTTTACT spaB 2414148 - 2411068 - | Lantibiotic dehydratase TERM 3808 2412178 - 2412190 + g 73 -3.5 -4.92239 | ATTTACATATCTAGG TAATT TCC AATTA TTTTTCCATTTTTCA TERM 3809 2412546 - 2412572 + g 78 -8.8 -3.79445 | overlap 2412531 2412547 TTCTAAATTCTTTAG AGGTGTTAGTTC CTA GAACTAATACCG TTTGCCTTGATACTT TERM 3810 2412547 - 2412571 + g 89 -12.3 -2.86944 | overlap 2412546 TCTAAATTCTTTAGA GGTGTTAGTTC CTA GAACTAATACC GTTTGCCTTGATACT TERM 3811 2413929 - 2413941 + g 71 -4.9 -4.614 | AACGTAAAATACTTA GAAAA AAG TTTTC TTTTGTATAATTACC TERM 3812 2414425 - 2414460 + H 90 -11.4 -3.84451 | opp_overlap 2414425 2414420, overlap 2414429 ATAAAAAAATGCAAA TAAAGGTGGCAACAAA TTTT TTTGTTGTTGCCTTTA TTTCGATTTAGGGAG TERM 3813 2414429 - 2414456 + H 82 -7.8 -4.53439 | opp_overlap 2414425 2414420, overlap 2414425 AAAAATGCAAATAAA GGTGGCAACAAA TTTT TTTGTTGTTGCC TTTATTTCGATTTAG TERM 3814 2415945 - 2415931 - g 84 -3.6 -5.42131 | overlap 2415933 CAATGATATAAAAAA TACTTT GAA AAAGCA GGTTAATATAGATTT Aflv_2441 2414483 - 2415988 + | Radical SAM superfamily enzyme Aflv_2442 2415985 - 2416725 + | hypothetical protein Aflv_2443 2416729 - 2417409 + | hypothetical protein Aflv_2444 2417416 - 2418891 + | Oligoendopeptidase TERM 3815 2419655 - 2419644 - g 73 -7.2 -4.19258 | opp_overlap 2419650 ATATTGCATTTAAAA GGCG CTGG CGCC TCCCCTAACTTGATC TERM 3816 2419787 - 2419805 + G 72 -7.6 -3.90318 | ATCGCTATTTTTGAT TAGTATTA CTT TAATACTA TTTATACAATCATCC Aflv_2445 2418909 - 2420162 + | Permease of the major facilitator superfamily trpS 2420155 - 2421153 + | Tryptophanyl-tRNA synthetase TERM 3817 2421425 - 2421415 - g 93 -4 -5.80003 | GGAAGAAATAAAAAA TTTC CTC GAAA TCGAACAAGCGGACA Aflv_2447 2421308 - 2421748 + | Transposase TERM 3818 2422083 - 2422065 - g 71 -3 -5.0538 | CGCGATCTTAAAAAA GGCCATGA GCA TCTTCGCC AAAAACCAGAAGTAA Aflv_2448 2421802 - 2422098 + | Transposase Aflv_2449 2422137 - 2422967 + | Transposase TERM 3819 2423019 - 2423045 + T 77 -10.2 -3.28712 | overlap 2423004 2423003 2423025 CTTTCCTCTTGAGGA GGGGAAGGGTTT ACC AAACCGTTCTCC TTCTCAAGAGGCCAC Aflv_2450 2424390 - 2423134 - | Retron-type reverse transcriptase TERM 3820 2423173 - 2423210 + g 81 -11.3 -2.89564 | overlap 2423176 TTCTTGTAGACTTTT GAGCCCTTGGTCATTCC AGTA GGAGTTTCCAAGGGTTC TGTGTAAGATGGGGC TERM 3821 2423176 - 2423207 + g 78 -9.4 -3.59698 | overlap 2423173 TTGTAGACTTTTGAG CCCTTGGTCATTCC AGTA GGAGTTTCCAAGGG TTCTGTGTAAGATGG Aflv_2451 2424758 - 2425321 + | Transposase related protein, contains ZN-ribbon DNA-binding domain TERM 3822 2425807 - 2425753 - g 85 -4.4 -5.52384 | gap 2, overlap 2425755 GCGTTACGAAAAAAA TATCCCCATGCGCCGGTGACAGTGTT TTACC AACACC-TCATCGA-GCAAGGGGAAA TAGAAAAACAAAACA TERM 3823 2425805 - 2425755 - g 74 -7 -4.40552 | gap 2, overlap 2425753 GTTACGAAAAAAATA TCCCCATGCGCCGGTGACAGTGTT TTACC AACACC-TCATCGA-GCAAGGGGA AATAGAAAAACAAAA Aflv_2452 2425459 - 2426712 + | Transposase TERM 3824 2427096 - 2427115 + G 81 -7.2 -4.59109 | opp_overlap 2427096 2427097 2427100, overlap 2427097 TTCTGCTAGATGAAA TGCATCTT GCGA AAGATGCG TTTTTGCAAGATATC TERM 3825 2427160 - 2427175 + G 70 -7.6 -3.66908 | overlap 2427154 2427153 TTTTCACATGGACTC CACGAA TCCG TTCGTG TTGATTTTGGCAGGA Aflv_2453 2426705 - 2427505 + | Type II secretory pathway, component ExeA (predicted ATPase) TERM 3826 2427506 - 2427531 + F 86 -7.5 -5.04325 | opp_overlap 2427511, overlap 2427511 GAAACCGGGGCATAA GGAAAGGGGCC GAAC GGCTCCTCTTC TTTTTCTGATTTCCG TERM 3827 2427511 - 2427526 + F 73 -8.2 -3.8772 | opp_overlap 2427511, overlap 2427506 CGGGGCATAAGGAAA GGGGCC GAAC GGCTCC TCTTCTTTTTCTGAT TERM 3828 2427587 - 2427625 + F 71 -6 -4.2558 | opp_overlap 2427597 AAAAAGCGTGCAAAA TCGGAGGGAATTCGCAAA CAT TTTGCGCAGTATTTCCGA TTTTCATCCAAAATA TERM 3829 2428035 - 2428004 - f 76 -6.6 -4.371 | opp_overlap 2428007, overlap 2428007 CCGAGCACACTAAAA CAAGGGAGATGTCA CGAG TAGCATCTCCCTTT ATTGTCTCAAATACA TERM 3830 2428007 - 2428032 + F 85 -8.3 -4.39329 | opp_overlap 2428004 2428007 AGCACACTAAAACAA GGGAGATGTCA CGAG TAGCATCTCCC TTTATTGTCTCAAAT TERM 3831 2428032 - 2428007 - f 82 -8.3 -4.29905 | opp_overlap 2428007, overlap 2428004 AGCACACTAAAACAA GGGAGATGTCA CGAG TAGCATCTCCC TTTATTGTCTCAAAT TERM 3832 2428519 - 2428551 + F 83 -5 -5.28414 | gap 1 TTCTTCTGTTTGTAA CTATTCAGC-CACAT GATC AAGTGAGTTGAATAG TTTTTGTATTTCTTG Aflv_2454 2428597 - 2429451 + | Transposase Aflv_2455 2429483 - 2430043 + | Transposase TERM 3833 2430041 - 2430070 + T 71 -6.6 -4.00476 | gap 1 ATTCTTTCTACTACT TAGGGCGTTTTCT ATAAC AGA-AATGCCCTA TTTGTGCTGGGTTTC TERM 3834 2432562 - 2432579 + T 73 -8.5 -3.66589 | opp_overlap 2432560 2432553 2432558 2432562 TTACAACTGAACACA CAAACGA TCGA TCGTTTG TTCTGGTTTCTGGTT Aflv_2456 2433035 - 2432547 - | Transposase Aflv_2457 2433589 - 2433074 - | Transposase TERM 3835 2433104 - 2433118 + g 80 -2.8 -5.42975 | TACTTCAGGGAAGGT GATTTC GAC GAATTC TTTTTGTTTCTCTCC TERM 3836 2434206 - 2434188 - H 82 -3.9 -5.42198 | CCGTAAAAAACAAAA TTTCGGT TCATC ACCAAAA GATGTACTTGATTTT TERM 3837 2434377 - 2434360 - H 77 -4.8 -4.99435 | TGGAATAAGGAAAAA CGATGC AAGAAA GCACCG CCTCTTTTCGAGCGA TERM 3838 2435398 - 2435454 + H 100 -6.1 -5.82281 | gap 1 CAACTGAGAATGCAT GCGAAATTTCCTCCATGGTTGATGGT TTGGTC ACCTTT-ATCATACAGGAAATTTCGC TTTTTTTGTATCTTT TERM 3839 2435545 - 2435555 + H 76 -3.2 -5.19916 | ACTTCCATTTTAATC CGCA AAC TGTG TTTTTTAAATATTTT TERM 3840 2436084 - 2436054 - g 100 -17 -3.30243 | opp_overlap 2436064, overlap 2436056 2436062 AGTCAGCCCCCACAA CAGACGAACAGTGC CTG GCACTGTTCGCCTA AAAACCACTATTCCA TERM 3841 2436082 - 2436056 - g 100 -17.4 -3.21924 | opp_overlap 2436064, overlap 2436054 2436062 TCAGCCCCCACAACA GACGAACAGTGC CTG GCACTGTTCGCC TAAAAACCACTATTC TERM 3842 2436076 - 2436062 - g 76 -10 -3.40191 | opp_overlap 2436064, overlap 2436056 2436054 CCCACAACAGACGAA CAGTGC CTG GCACTG TTCGCCTAAAAACCA TERM 3843 2436322 - 2436308 - g 73 -2.8 -5.08255 | overlap 2436309 ACTTGGAAAATAAAA CGCTCA CGG TGAACA AAACGCTAGTGTGTC Aflv_2458 2436013 - 2436462 + | Phage integrase Aflv_2459 2436453 - 2436776 + | Phage integrase family protein Aflv_2460 2438265 - 2436829 - | Cysteine desulfurase activator SufB Aflv_2461 2438689 - 2438249 - | NifU involved in Fe-S cluster formation csd 2439902 - 2438679 - | Cysteine desulfurase Aflv_2463 2441203 - 2439899 - | Cysteine desulfurase activator SufB Aflv_2464 2442046 - 2441219 - | Cysteine desulfurase activator ATPase TERM 3844 2442173 - 2442155 - R 90 -8.9 -5.14477 | opp_overlap 2442155 CACATATGTAAAAAA GGATAGG GAATT CCTATCC TTTTAATGAACGTGC TERM 3845 2442155 - 2442173 + r 89 -9.6 -4.26076 | opp_overlap 2442155 CACATATGTAAAAAA GGATAGGG AAT TCCTATCC TTTTAATGAACGTGC Aflv_2465 2442589 - 2442176 - | Gamma-carboxymuconolactone decarboxylase subunit TERM 3846 2442572 - 2442591 + g 76 -7.8 -4.18506 | opp_overlap 2442572 GCAAAAAATATAAAA GGATGCCC AAAT GGACATCC TTATTTTGACGCTGG TERM 3847 2442591 - 2442572 - G 100 -10 -5.06052 | opp_overlap 2442572 GCAAAAAATATAAAA GGATGCCC AAAT GGACATCC TTATTTTGACGCTGG Aflv_2466 2443416 - 2442592 - | ABC-type metal ion transport system, periplasmic component/surface antigen Aflv_2467 2444160 - 2443435 - | ABC-type metal ion transport system, permease component TERM 3848 2443795 - 2443783 - GR 76 -6.9 -4.39426 | CATACGTGCATAAAA CGGAG CGG CCCCG ATAATGAGTGCCGGT TERM 3849 2444020 - 2444008 - GR 75 -7.7 -3.99062 | AATACCGAGCACAAA CGTTG CGA CAACG GAGACGGCGGTCATA Aflv_2468 2445121 - 2444093 - | ABC-type metal ion transport system, ATPase component TERM 3850 2444156 - 2444145 - G 75 -5.8 -4.63218 | opp_overlap 2444145 2444146 2444147, overlap 2444146 2444147 TGCTGGCGAATAAAA GCGA GCGC TCGC TCAATTTCTTCATTC TERM 3851 2444667 - 2444684 + gr 80 -7.7 -4.3739 | overlap 2444662 TTCGCTAATGCGCGT GCAATGC CAAC GCGTTGC TTTTGTCCGCCGCTC TERM 3852 2445175 - 2445148 - R 100 -15 -5.14563 | opp_overlap 2445173 CCTTCCATGAAAAAA GCCTTTCTGCTC AAGA GAACAGAAAGGC GTAATGATCCATTCT TERM 3853 2445549 - 2445514 - R 93 -11.2 -4.4267 | opp_overlap 2445514 2445512 TGTTAAAATGCAAAA GACTGACCCAACACGC ATTA GCGTTTTAGATCAGCC TCTTCAGTTCAAAAA Aflv_2469 2446093 - 2445632 - | hypothetical protein Aflv_2470 2446352 - 2447230 + | Transposase and inactivated derivatives, IS5 family TERM 3854 2447208 - 2447250 + T 100 -15.7 -3.14944 | gap 1, opp_overlap 2447210 TGTATTCACTTGTAA CACTTGG-GCTAGTTGAGCG CTAG CGCTCAACTAGCACCACGGG TTAACTATAATAATC TERM 3855 2447248 - 2447210 - T 100 -16.9 -3.04461 | gap 1, opp_overlap 2447208 TATTCACTTGTAACA CTTGG-GCTAGTTGAGCG CTAG CGCTCAACTAGCACCACG GGTTAACTATAATAA Aflv_2471 2447774 - 2447310 - | hypothetical protein TERM 3856 2447968 - 2447955 - H 77 -5.3 -5.00616 | opp_overlap 2447949 2447955 CTTCTTCTCAAAAAA TAGCT GATC AGCTA TTTTTAATTTACCAA TERM 3857 2447955 - 2447968 + H 77 -5.3 -4.98531 | opp_overlap 2447955, overlap 2447949 CTTCTTCTCAAAAAA TAGCT GATC AGCTA TTTTTAATTTACCAA TERM 3858 2448023 - 2448040 + H 73 -7 -4.16842 | opp_overlap 2448004 2448003 2447994 TTTTCCGCCAATTTT TTGGCG AAAATC CGCCAA TTTCTTCAAAATAAA Aflv_2472 2448111 - 2448710 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 3859 2448706 - 2448748 + T 79 -10.1 -3.53091 | gap 1, opp_overlap 2448708, overlap 2448708 2448713 GGTTACAACTCATAA AATGAAAGGTGCTAG-TCGA AAAA TCTAACTAGCACCTTTCATA TTTACACCCGCGAAT TERM 3860 2448746 - 2448708 - T 100 -14.9 -4.49337 | gap 1, opp_overlap 2448706 2448708 2448713 TTACAACTCATAAAA TGAAAGGTGCTAGTC-GA AAAA TCTAACTAGCACCTTTCA TATTTACACCCGCGA TERM 3861 2448708 - 2448746 + T 87 -12.7 -3.34398 | gap 1, opp_overlap 2448708, overlap 2448706 2448713 TTACAACTCATAAAA TGAAAGGTGCTAG-TCGA AAAA TCTAACTAGCACCTTTCA TATTTACACCCGCGA TERM 3862 2448713 - 2448741 + T 71 -6.8 -4.00532 | gap 1, opp_overlap 2448708, overlap 2448708 2448706 ACTCATAAAATGAAA GGTGCTAG-TCGA AAAA TCTAACTAGCACC TTTCATATTTACACC Aflv_2473 2450042 - 2448750 - | O-acetylhomoserine sulfhydrylase Aflv_2474 2450403 - 2450104 - | hypothetical protein TERM 3863 2450553 - 2450516 - R 82 -8.7 -4.1673 | gap 2, opp_overlap 2450518 2450526, overlap 2450518 CAATTTCCCAAGAAA TATGTCGAAAGCTGGCT TTATTC AGCCAGCTTTCG-CA-A CGTTTCGTATAAATA TERM 3864 2450552 - 2450518 - R 95 -13.8 -3.67877 | gap 1, opp_overlap 2450518 2450526, overlap 2450516 ATTTCCCAAGAAATA TGTCGAAAGCTGGCT TTATTC AGCCAGCTTTCG-CA ACGTTTCGTATAAAT TERM 3865 2450526 - 2450545 + r 74 -9.3 -3.56594 | opp_overlap 2450518 2450516, overlap 2450518 AGAAATATGTCGAAA GCTGGCT TTATTC AGCCAGC TTTCGCAACGTTTCG Aflv_2475 2450802 - 2450533 - | Thioredoxin Aflv_2476 2451176 - 2450811 - | Small primase-like protein (Toprim domain) TERM 3866 2451255 - 2451236 - R 95 -11.4 -4.68724 | TTATCCAATACAAAA GGACAGCG ATGT CGCTGCCC TTAACACCAACCACC Aflv_2477 2451504 - 2451256 - | hypothetical protein TERM 3867 2451523 - 2451500 - G 77 -3.8 -5.14563 | opp_overlap 2451512 TGTTTTAGCAAAAAA GACACCCC TGTGTTGT AGGGTGCC CTGCGAGTTGTTTTT gcvH 2451922 - 2451539 - | Glycine cleavage system H protein (lipoate-binding) Aflv_2479 2452339 - 2451980 - | Arsenate reductase, glutaredoxin family TERM 3868 2452406 - 2452372 - R 100 -14.4 -4.49353 | opp_overlap 2452373 2452374 2452378, overlap 2452373 2452374 2452378 TCACAATATAACAAA GCGAAAGTACCAGACG ATG CGTCTGGTACTTCCAT TATTACACAACATAT TERM 3869 2452373 - 2452405 + r 95 -13.5 -3.61715 | opp_overlap 2452372 2452373 2452374 2452378, overlap 2452374 2452378 CACAATATAACAAAG CGAAAGTACCAGACG ATG CGTCTGGTACTTCCA TTATTACACAACATA TERM 3870 2452405 - 2452373 - R 100 -17.9 -3.28527 | opp_overlap 2452373 2452374 2452378, overlap 2452372 2452374 2452378 CACAATATAACAAAG CGAAAGTACCAGACG ATG CGTCTGGTACTTCCA TTATTACACAACATA TERM 3871 2452374 - 2452404 + r 100 -17 -2.76815 | opp_overlap 2452373 2452372 2452374 2452378, overlap 2452373 2452378 ACAATATAACAAAGC GAAAGTACCAGACG ATG CGTCTGGTACTTCC ATTATTACACAACAT TERM 3872 2452404 - 2452374 - R 100 -19.2 -2.56032 | opp_overlap 2452374 2452373 2452378, overlap 2452373 2452372 2452378 ACAATATAACAAAGC GAAAGTACCAGACG ATG CGTCTGGTACTTCC ATTATTACACAACAT TERM 3873 2452400 - 2452378 - R 100 -16.4 -3.94868 | opp_overlap 2452374 2452373 2452378, overlap 2452374 2452373 2452372 TATAACAAAGCGAAA GTACCAGACG ATG CGTCTGGTAC TTCCATTATTACACA TERM 3874 2452378 - 2452400 + r 100 -16.4 -3.28745 | opp_overlap 2452378 2452374 2452373 2452372, overlap 2452374 2452373 TATAACAAAGCGAAA GTACCAGACG ATG CGTCTGGTAC TTCCATTATTACACA Aflv_2480 2454193 - 2452409 - | Long chain acyl-CoA dehydrogenase TERM 3875 2452608 - 2452618 + g 90 -4 -5.63012 | opp_overlap 2452604, overlap 2452604 TGGCAGAAAATTTGT GTAT ACA ATAC TTTTTGTTTGTTTTT Aflv_2481 2455378 - 2454206 - | Acetyl-CoA acetyltransferase TERM 3876 2455302 - 2455321 + g 87 -6.4 -5.22039 | overlap 2455303 CCTAAATCATCTGGT CGGACGTT CGCT AACGTCCC TTTTTTCGCTTTGCC TERM 3877 2455303 - 2455320 + g 80 -9.9 -3.72139 | overlap 2455302 CTAAATCATCTGGTC GGACGTT CGCT AACGTCC CTTTTTTCGCTTTGC TERM 3878 2455644 - 2455659 + H 86 -4.6 -5.40072 | overlap 2455646 GTCGCATACCCTGTT TCCCCG ACAA CCGGGA TTTTTTTACGCACCG TERM 3879 2456924 - 2456954 + H 91 -6.3 -5.48054 | gap 1, opp_overlap 2456924 2456923 2456926 TGTCTTCATAGTAAC TATTCAGC-CACAT CATA AAGTGAGCTGAATA TTTTTTGCTTTTCCT TERM 3880 2457884 - 2457872 - g 72 -7.7 -3.75884 | opp_overlap 2457871, overlap 2457881 GTGGAAAGAAAGCAA CCGAT GAA ATCGG GATTCTTCCACGATA TERM 3881 2458416 - 2458404 - g 86 -3.3 -5.66989 | opp_overlap 2458404 2458411, overlap 2458393 GAAACACGAAAAAAA CGTGT GGG ACTCG TTGTGTCTTCTGTTG Aflv_2483 2456998 - 2458470 + | Transposase TERM 3882 2458468 - 2458497 + F 73 -7.3 -3.9712 | GTTCTTTCCGCTACG TAGGGCATTTT CTATGACC GAAATGCCCTA TTTGTGCTGGGCTAC TERM 3883 2459425 - 2459442 + G 81 -7.1 -4.67563 | opp_overlap 2459429 CCCCCTTATCCGAAT TGAATGA ATGG TCATTCA TTTTCCTTTATCTTA TERM 3884 2459583 - 2459565 - g 84 -3.8 -5.48054 | ATGAAAATGAAAAAA CACCCG TCTAAAG CAGGTG TAAGTGCTGCAAGTG Aflv_2485 2459424 - 2459696 + | hypothetical protein TERM 3885 2459717 - 2459694 - T 95 -14 -3.54146 | opp_overlap 2459694, overlap 2459698 AATATGGGAAATGAA TAAAGGTGGG ACAC CCCACCTTTA TTTTTTGAATATACC TERM 3886 2459694 - 2459717 + T 100 -14 -5.1287 | opp_overlap 2459694 2459698 AATATGGGAAATGAA TAAAGGTGGG ACAC CCCACCTTTA TTTTTTGAATATACC TERM 3887 2459713 - 2459698 - T 90 -10.4 -4.39696 | opp_overlap 2459694, overlap 2459694 TGGGAAATGAATAAA GGTGGG ACAC CCCACC TTTATTTTTTGAATA Aflv_2486 2460686 - 2459715 - | Proline dehydrogenase TERM 3888 2460678 - 2460699 + g 78 -5.9 -4.86001 | opp_overlap 2460678 ACCCGTATTGTAACA CGTTTTCAA TGAA TTGAATACG TTTTTGTCGAATAAT Aflv_2487 2460752 - 2461048 + | hypothetical protein Aflv_2488 2461062 - 2461385 + | Spore coat protein F related TERM 3889 2461411 - 2461392 - f 90 -9.2 -4.88228 | opp_overlap 2461392 ATGCAATAGGAAAAA CCGACTGC TGAT GCGGTCGG TTTTTTGTATAATGG TERM 3890 2461392 - 2461411 + F 100 -11.4 -5.39721 | opp_overlap 2461392 ATGCAATAGGAAAAA CCGACTGC TGAT GCGGTCGG TTTTTTGTATAATGG Aflv_2489 2461457 - 2462608 + | HD-GYP domain protein TERM 3891 2462689 - 2462701 + G 78 -5.5 -4.95854 | opp_overlap 2462689, overlap 2462690 GAATGCTCAAATGTA TGGTC GCA GACCG TTTTTCGGTTTTTTC Aflv_2490 2462654 - 2462857 + | hypothetical protein TERM 3892 2462867 - 2462890 + T 100 -11 -5.42131 | opp_overlap 2462867 TATTAAACATAAAAA GCTAAGGAGC TAGT GCTCCCTAGC TTTTTTCTATGCTTG TERM 3893 2462890 - 2462867 - T 100 -13.2 -5.22289 | opp_overlap 2462867 TATTAAACATAAAAA GCTAAGGAGC TAGT GCTCCCTAGC TTTTTTCTATGCTTG Aflv_2491 2463208 - 2462897 - | Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides Aflv_2492 2464301 - 2463225 - | Surface layer protein precursor TERM 3894 2464090 - 2464100 + g 74 -6.8 -4.36089 | ACAGTAGCATGGGGT GGGA TTT TCCC TGTTTTTTTGACGTA TERM 3895 2464246 - 2464262 + g 75 -2.3 -5.28683 | AACATCATACTCATT GTAATCA CAC TTATTAC TTTTTTCATATTCAT Aflv_2493 2464777 - 2464298 - | Putative heme iron utilization protein fhuC 2465630 - 2464794 - | ABC-type Fe3+-siderophore transport system, ATPase component TERM 3896 2465343 - 2465356 + gr 84 -3.8 -5.42259 | ATGATTGTTCGTTTG TGGC AACATC GCCA TTTTTTTCGCGATCG Aflv_2495 2466600 - 2465572 - | ABC-type Fe3+-siderophore transport system, permease component Aflv_2496 2467579 - 2466614 - | ABC-type Fe3+-siderophore transport system, periplasmic component TERM 3897 2467678 - 2467695 + r 76 -6.9 -4.44819 | opp_overlap 2467678, overlap 2467673 TCAAAATAAAAAAAA CGACCGC AACC GCAGTCG TTTTCATCTGTTCTA TERM 3898 2467695 - 2467678 - R 100 -9.1 -6.34616 | opp_overlap 2467678 2467673 TCAAAATAAAAAAAA CGACCGC AACC GCAGTCG TTTTCATCTGTTCTA smpB 2468629 - 2468165 - | tmRNA-binding protein TERM 3899 2468675 - 2468713 + r 86 -2.4 -6.01725 | opp_overlap 2468680 2468681 2468686, overlap 2468676 2468681 TTAGCAAAAATAAGA AGAAAGGAAAAGCCTC ATCAGTG GAGGCTTTCCTTATCG TTTTTTCTTTTTCTT TERM 3900 2468707 - 2468680 - R 80 -6.4 -4.68451 | gap 1, opp_overlap 2468676 2468675 2468681, overlap 2468681 2468686 AAAAATAAGAAGAAA GGAAAAGCCTC ATCAGTG GAGGCTTT-CC TTATCGTTTTTTCTT TERM 3901 2468707 - 2468681 - R 70 -8.8 -3.37411 | opp_overlap 2468681 2468676 2468675, overlap 2468680 2468686 AAAATAAGAAGAAAG GAAAAGCCTC ATCAGTG GAGGCTTTCC TTATCGTTTTTTCTT TERM 3902 2468702 - 2468686 - R 74 -5.1 -4.71708 | opp_overlap 2468681 2468676 2468675, overlap 2468680 2468681 AAGAAGAAAGGAAAA GCCTC ATCAGTG GAGGC TTTCCTTATCGTTTT rnr 2470984 - 2468708 - | Exoribonuclease R TERM 3903 2469680 - 2469662 - G 71 -8.8 -3.35088 | AAATTCCTCAATTAA GCGTTCGG CAA CGGAACGC TCACGCAACACGACG Aflv_2499 2471745 - 2471005 - | Esterase/lipase TERM 3904 2471251 - 2471261 + g 74 -6.8 -4.27192 | overlap 2471239 AATGAGTTGTTGCAA CGCT TTT AGCG TTTTCATCGGCGTTT TERM 3905 2471803 - 2471769 - R 82 -12.2 -3.01712 | opp_overlap 2471774, overlap 2471774 CCTTTCTCTCCAACA GAAAAGGCAGCCCTTT TCG AATGGACCGCCCTTTC CCCATATTTTACAAT TERM 3906 2471798 - 2471774 - R 88 -8.5 -4.66537 | opp_overlap 2471774, overlap 2471769 CTCTCCAACAGAAAA GGCAGCCCTTT TCG AATGGACCGCC CTTTCCCCATATTTT secG 2472060 - 2471812 - | Preprotein translocase subunit SecG TERM 3907 2472375 - 2472349 - R 100 -14.6 -5.71295 | opp_overlap 2472347 ACATAAAAATAAAAA GACTATCTCATG AAT CATGAGATAGCC CATATTACAGCTGTT Aflv_2501 2472732 - 2472394 - | hypothetical protein TERM 3908 2473118 - 2473149 + r 72 -10.2 -2.68109 | opp_overlap 2473119, overlap 2473117 2473115 CGCTCCCAAACCAAA ATAGCCATAGAGGA GATC TCCCCTATGGCTAA ATCTTATTCATCTAT TERM 3909 2473148 - 2473119 - R 100 -15.9 -4.54727 | opp_overlap 2473118 2473117 2473115 GCTCCCAAACCAAAA TAGCCATAGAGGA GATC TCCCCTATGGCTA AATCTTATTCATCTA Aflv_2502 2473596 - 2473153 - | hypothetical protein Aflv_2503 2474497 - 2473610 - | Rhs family protein TERM 3910 2473640 - 2473650 + g 73 -2.6 -5.11937 | TACTGTTCTCCAGCC TTTA CCA TAAA TTTTTTCAACTTCTT TERM 3911 2474290 - 2474300 + g 71 -8.2 -3.44051 | opp_overlap 2474289 TCAGGGCAATGACAT CGCC ATG GGCG TTATAGTGATAAAAG TERM 3912 2474530 - 2474504 - R 100 -10.2 -5.19328 | ACTGTACAATAAAAA GGTTATCCCTTA AAT CACGGGATAACC CTAAAAAAGCTAAAT Aflv_2504 2475295 - 2474549 - | hypothetical protein TERM 3913 2475378 - 2475348 - R 85 -5.5 -5.25803 | gap 1, opp_overlap 2475348, overlap 2475370 AATTGCTATAAAAAA GACGACACTGCT ATAAAGCA AGCAG-GTCGCC TAGATTGGTTCTATC Aflv_2505 2475874 - 2475389 - | hypothetical protein Aflv_2506 2476458 - 2476021 - | hypothetical protein Aflv_2507 2477964 - 2476459 - | Rhs family protein TERM 3914 2477229 - 2477239 + g 71 -8.2 -3.44051 | opp_overlap 2477228 TTAGGGCGATGACAT CGCC ATG GGCG TTATAGTGGTAAAAA TERM 3915 2477450 - 2477463 + g 70 -5.2 -4.46212 | opp_overlap 2477450, overlap 2477437 TTGTACGTCACAAAC GGCG TGCTTT CGCC TTTTCTCGTAACCGA TERM 3916 2478047 - 2478006 - R 82 -3.8 -5.46657 | gap 2, opp_overlap 2478013 GACTCTAATAAAAAA GGGACTGTCCAATCAGTGGA TTGT TCGGCT-ATTGGAC-GCCCC GTTCGGACATGTATC Aflv_2508 2480712 - 2479021 - | Rhs family protein TERM 3917 2479132 - 2479146 + g 70 -5.8 -4.41087 | TTTCTTATACTGCAT TCTAAA TAC TTTAGA TTTATCTTTACTTCT TERM 3918 2479411 - 2479425 + g 75 -8.6 -3.88291 | CGCCGCTTTCCAACC GCCTTT TTT AAAGGC TTTATACCCATCATA TERM 3919 2479805 - 2479815 + g 71 -2.4 -5.14563 | TAGTGGTAGAAGTAC GTCG CCC CGCC TTTTTTCATCGCCAA TERM 3920 2479997 - 2480010 + g 75 -5.2 -4.81212 | opp_overlap 2479997, overlap 2479984 TGGTACGTCACAAAC GGCG TGCTTT CGCC TTTTCTTGTGATGGA TERM 3921 2480519 - 2480492 - G 73 -5.6 -4.48987 | gap 1, opp_overlap 2480495 2480497, overlap 2480487 2480493 TCGTCATAATCAAAA CGGTACGTAT-CG GTA CGTATACGTTCCA TCTTGGACGATCGTG TERM 3922 2480620 - 2480635 + g 74 -4.6 -4.91109 | opp_overlap 2480613, overlap 2480609 GCAATTTATCCGAGG TGGTCG GATA CGTCCA TTTTTGTAATCCCCC Aflv_2509 2481597 - 2480917 - | hypothetical protein Aflv_2510 2482259 - 2481591 - | Rhs family protein TERM 3923 2482240 - 2482291 + g 100 -11.8 -4.05026 | opp_overlap 2482247 2482249, overlap 2482247 2482249 TAACGGGCGATCAGG TAATAAACAGGGTGTCCCAAAAAT GATC ATTTTTGGGACACCCTCTTTCAAA TTCTTTAAATTTCAA TERM 3924 2482247 - 2482284 + g 100 -18.7 -3.74238 | opp_overlap 2482247 2482249, overlap 2482240 2482249 CGATCAGGTAATAAA CAGGGTGTCCCAAAAAT GATC ATTTTTGGGACACCCTC TTTCAAATTCTTTAA TERM 3925 2482284 - 2482247 - G 100 -18.7 -4.21974 | opp_overlap 2482247 2482240 2482249, overlap 2482249 CGATCAGGTAATAAA CAGGGTGTCCCAAAAAT GATC ATTTTTGGGACACCCTC TTTCAAATTCTTTAA TERM 3926 2482249 - 2482282 + g 100 -21.3 -3.44353 | opp_overlap 2482247 2482249, overlap 2482247 2482240 ATCAGGTAATAAACA GGGTGTCCCAAAAAT GATC ATTTTTGGGACACCC TCTTTCAAATTCTTT TERM 3927 2482282 - 2482249 - G 100 -21.3 -3.70709 | opp_overlap 2482249 2482247 2482240, overlap 2482247 ATCAGGTAATAAACA GGGTGTCCCAAAAAT GATC ATTTTTGGGACACCC TCTTTCAAATTCTTT Aflv_2511 2482710 - 2482348 - | hypothetical protein TERM 3928 2482500 - 2482513 + g 75 -5.3 -4.82901 | ACAACAATTTTCTTT GATAC CTAG GTATC TTTTTATGAGCAAGG Aflv_2512 2488077 - 2482768 - | Rhs family protein TERM 3929 2483140 - 2483154 + g 75 -8.6 -3.88291 | CGCCGCTTTCCAACC GCCTTT TTT AAAGGC TTTATACCCATCATA TERM 3930 2486580 - 2486594 + g 73 -2.8 -5.18561 | overlap 2486572 ATGTCACCGTCCGAT TCATCG GGC CTATGA TTTTTTCGATCTTTC Aflv_2513 2489780 - 2488086 - | Rhs family protein TERM 3931 2488368 - 2488396 + g 72 -7.5 -4.02534 | TTTATAACTGCTGTT CGTAGTGGAAACA ACT TTTTTCCAATACG TTTGTCCATTTCCAT TERM 3932 2488643 - 2488666 + g 86 -10.4 -3.75707 | opp_overlap 2488623, overlap 2488642 GTGTCACATACACGT TGAATGTGGC ACTC GTCACATTCA TATTTTCGATATTTG TERM 3933 2490553 - 2490495 - R 78 -4.1 -5.26907 | gap 1, opp_overlap 2490503 2490512 2490548, overlap 2490501 2490512 TAATACAAAAGAAAA GAAAAACTTA-AAAGAAAGGATGCCCTC ATGC GAAGGCATCCTTCATCTATTACTTCTTC AAGTTGTAGAACGTT TERM 3934 2490545 - 2490501 - R 84 -2.2 -5.70761 | gap 1, opp_overlap 2490503 2490512, overlap 2490495 2490512 AAAAGAAAAGAAAAA CTTAAAAGAAAGGATGCCCTC ATGC GAAGGCATCCTT-CATCTATT ACTTCTTCAAGTTGT TERM 3935 2490535 - 2490512 - R 100 -13.2 -4.75954 | opp_overlap 2490503 2490512, overlap 2490501 2490495 AAAACTTAAAAGAAA GGATGCCCTC ATGC GAAGGCATCC TTCATCTATTACTTC TERM 3936 2490512 - 2490535 + r 80 -11 -3.40022 | opp_overlap 2490512 2490501 2490495, overlap 2490503 AAAACTTAAAAGAAA GGATGCCCTC ATGC GAAGGCATCC TTCATCTATTACTTC eno 2491839 - 2490544 - | Enolase TERM 3937 2490886 - 2490912 + g 74 -4.4 -5.00616 | opp_overlap 2490893, overlap 2490889 2490893 TTTCGTATTTGTTAC GAATAAATCGTC ACC GACGAGTTGTAC TTTTTTGCCAAGGCG TERM 3938 2490905 - 2490893 - G 79 -7.7 -4.24342 | opp_overlap 2490889 2490886 2490893 TTTGTTACGAATAAA TCGTC ACC GACGA GTTGTACTTTTTTGC TERM 3939 2491178 - 2491197 + g 70 -5.7 -4.35524 | overlap 2491162 GCTTCGATAATTGTT TCGAGCG CTTCTT CGTTCGA TTTTAAGTTTGGAGC pgm 2493394 - 2491859 - | Phosphoglycerate mutase tpiA 2494146 - 2493391 - | Triosephosphate isomerase TERM 3940 2493790 - 2493810 + g 80 -2.6 -5.49234 | opp_overlap 2493799, overlap 2493780 GATTGGCACAAGTCC GTGCTT AAATGCCGC AAGCAC TTTTTTGTTGACTGT pgk 2495348 - 2494164 - | 3-phosphoglycerate kinase TERM 3941 2494536 - 2494580 + g 76 -2.8 -5.34381 | gap 1, opp_overlap 2494536, overlap 2494538 CGCATCGTTTGAAAA GTCGTCAGCTACGAC-TGCAT CCAC AGGCATGTAGAAGTTGACGCC TTTTTCTTTCGCTTT TERM 3942 2495242 - 2495265 + g 70 -6 -4.27316 | gap 1, overlap 2495234 AGCGCGGCGCGAATG CGTGTATCGTC AGT GACGACAC-CG TTTTGCATTGGCACG TERM 3943 2495375 - 2495415 + r 95 -14.7 -2.89935 | opp_overlap 2495379 2495383, overlap 2495367 2495382 2495383 CTTATTCGTGTGATA CATAGAAAGGGAGTGGGGA TGA TCCCCGCTCCCCTTCTCGG TATGTCCAACTATTT TERM 3944 2495411 - 2495379 - R 100 -18.5 -2.98823 | opp_overlap 2495375 2495367 2495382 2495383, overlap 2495383 TTCGTGTGATACATA GAAAGGGAGTGGGGA TGA TCCCCGCTCCCCTTC TCGGTATGTCCAACT TERM 3945 2495382 - 2495408 + r 100 -14.4 -3.41125 | opp_overlap 2495379 2495383, overlap 2495375 2495367 2495383 GTGTGATACATAGAA AGGGAGTGGGGA TGA TCCCCGCTCCCC TTCTCGGTATGTCCA TERM 3946 2495383 - 2495407 + r 100 -17.9 -2.64354 | opp_overlap 2495383 2495379, overlap 2495382 2495375 2495367 TGTGATACATAGAAA GGGAGTGGGGA TGA TCCCCGCTCCC CTTCTCGGTATGTCC TERM 3947 2495407 - 2495383 - R 100 -15.7 -4.17296 | opp_overlap 2495382 2495375 2495367 2495383, overlap 2495379 TGTGATACATAGAAA GGGAGTGGGGA TGA TCCCCGCTCCC CTTCTCGGTATGTCC gapA 2496471 - 2495464 - | Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase cggR 2497539 - 2496508 - | Transcriptional regulator, contains sigma factor-related N-terminal domain TERM 3948 2497668 - 2497631 - R 100 -10.1 -5.81412 | gap 1 TTTACGTAAAAAAAA TTCACC-CCTGCTACAAC TTT ATTGTAACAGGAAGTGAA ACGTTATTCAACTGC Aflv_2520 2497909 - 2497676 - | Glutaredoxin related protein sigL 2499202 - 2497922 - | DNA-directed RNA polymerase specialized sigma subunit, sigma54 TERM 3949 2499339 - 2499325 - H 71 -7.1 -3.885 | ATTCTTATAGAACAA GCGAG CAAGC CTCGC AAAATTCATCTATTC TERM 3950 2499355 - 2499375 + H 100 -12.6 -5.13354 | AAAATTCATCTATTC GTCCGGTG CGGCA CACCGGAC TTTATTTTTTATACA TERM 3951 2499419 - 2499395 - H 100 -17.9 -4.96848 | opp_overlap 2499395, overlap 2499416 TTTTTTATACAAAAA CCCCCGCTTGC ATA GCAAGCAGGGG TTAATTAACGCCCTC TERM 3952 2499395 - 2499419 + H 100 -15.7 -3.34013 | opp_overlap 2499395 2499416 TTTTTTATACAAAAA CCCCCGCTTGC ATA GCAAGCAGGGG TTAATTAACGCCCTC clpP 2499713 - 2500303 + | ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) TERM 3953 2500331 - 2500301 - T 100 -12.7 -4.72272 | opp_overlap 2500306, overlap 2500306 CGCGTCGATGAAAAA TAAAACAAGGCGG CCTTC CCGCCTTGTTTTT ATGCTTCTTTTTGCA TERM 3954 2500326 - 2500306 - T 100 -12.6 -5.3104 | opp_overlap 2500306, overlap 2500301 CGATGAAAAATAAAA CAAGGCGG CCTTC CCGCCTTG TTTTTATGCTTCTTT TERM 3955 2500306 - 2500326 + T 100 -12.6 -5.05301 | opp_overlap 2500301 2500306 CGATGAAAAATAAAA CAAGGCGG CCTTC CCGCCTTG TTTTTATGCTTCTTT crh 2500629 - 2500330 - | Phosphotransferase system, HPr-related protein Aflv_2524 2501578 - 2500607 - | hypothetical protein Aflv_2525 2502547 - 2501582 - | Uncharacterized conserved protein, YbhK/UPF0052 family TERM 3956 2502097 - 2502111 + g 75 -5.7 -4.65895 | CACGTTTAATTTTTT TTCCG GAATA CGGAA TTTTTGACTCACCCG TERM 3957 2502516 - 2502505 - G 70 -5.8 -4.25104 | overlap 2502507 GCCCCCGGAGCAAAA CAGG AAGC CCTG TGCCCCCGCCAATGA Aflv_2526 2503434 - 2502544 - | Predicted P-loop-containing kinase Aflv_2527 2503910 - 2503452 - | NTP pyrophosphohydrolase TERM 3958 2504042 - 2504014 - R 74 -3.7 -5.10461 | overlap 2504018 TCTATGCAATAAAAA GAAAGCACGGG ACGAAAG CCCGTGCCAAC AAGTATATATAAAAA TERM 3959 2504038 - 2504018 - R 93 -9.7 -5.05606 | overlap 2504014 TGCAATAAAAAGAAA GCACGGG ACGAAAG CCCGTGC CAACAAGTATATATA trxB 2505123 - 2504140 - | Thioredoxin reductase Aflv_2529 2506672 - 2505182 - | TPR-repeat-containing protein TERM 3960 2505785 - 2505773 - G 77 -4.7 -4.92757 | overlap 2505774 GTACCAATAATAAAA CGGGG CAT CCCCC TCAAAGCCGCGACGG TERM 3961 2505784 - 2505774 - G 71 -8.2 -3.5457 | overlap 2505773 TACCAATAATAAAAC GGGG CAT CCCC CTCAAAGCCGCGACG hisI 2507334 - 2506711 - | Phosphoribosyl-AMP cyclohydrolase/pyrophosphohydrolase hisF 2508089 - 2507331 - | Imidazoleglycerol-phosphate synthase hisA 2508814 - 2508086 - | Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase hisH 2509446 - 2508814 - | Imidazole glycerol phosphate synthase subunit hisH hisB 2510031 - 2509447 - | Imidazoleglycerol-phosphate dehydratase hisD 2511308 - 2510031 - | Histidinol dehydrogenase TERM 3962 2510335 - 2510325 - G 73 -8.2 -3.67918 | opp_overlap 2510322 AATTAATATTTCAAA CGGC TCT GCCG TCATCACTTCTAAAT TERM 3963 2511034 - 2511054 + g 82 -8.3 -4.37886 | overlap 2511024 GATGTCGCACGTTGA CGTTCGTGA TAT TCGCGAATG TTTTGTGCCGCCTCG hisG 2511939 - 2511298 - | ATP phosphoribosyltransferase hisZ 2513117 - 2511933 - | ATP phosphoribosyltransferase involved in histidine biosynthesis TERM 3964 2512872 - 2512858 - G 71 -8.5 -3.54424 | opp_overlap 2512857 2512854 TTCGATGCCGCTAAA CGCGC AATGG GCGCG GTCATATCTGGGCGC TERM 3965 2513139 - 2513170 + r 77 -6 -4.63952 | CCCGTCCTTCTTTTA CTTTAGTTCGCTAA TATA TTAGCAAAGTAAAG TTTGTTATTTGTAGT TERM 3966 2513288 - 2513267 - R 100 -10.9 -6.24157 | opp_overlap 2513275 2513277 ATTCATAAAAAAAAA CGCCTTAGC GTTC GCTAAGACG AATGATTTGCATCGG Aflv_2538 2513759 - 2513271 - | Acetyltransferase (isoleucine patch superfamily) hprP 2514403 - 2513756 - | P-Ser-HPr phosphatase TERM 3967 2514350 - 2514332 - G 79 -6.8 -4.66609 | opp_overlap 2514332 2514349 GAGCGTATGCAAAAA CGATTCAA TAA TTAAATCG TTCGTATTAATGAGC Aflv_2540 2515349 - 2514393 - | Uncharacterized membrane protein lgt 2516165 - 2515350 - | Prolipoprotein diacylglyceryltransferase TERM 3968 2515723 - 2515698 - G 71 -4.7 -4.60924 | gap 1, opp_overlap 2515698 2515714 CAAACTTTCTAAAAA CGCACG-CGA TACAGGT CCGCCGTGCG CTTCTTGGTTCATAA TERM 3969 2515846 - 2515809 - G 86 -7.8 -4.59773 | overlap 2515810 GGCTAGTTTCAAAAA CGACAGGTGGCGTTTT TTCGCG AAAACGATACCTGTCA CAATGGCACCAATTA TERM 3970 2515845 - 2515810 - G 71 -9.1 -3.35542 | overlap 2515809 GCTAGTTTCAAAAAC GACAGGTGGCGTTTT TTCGCG AAAACGATACCTGTC ACAATGGCACCAATT hprK 2517133 - 2516174 - | Serine kinase of the HPr protein, regulates carbohydrate metabolism TERM 3971 2517182 - 2517161 - R 86 -4.4 -5.45802 | gap 1, opp_overlap 2517161 2517156 CCGTCAAAATAAAAA CGCTCACGC ACGAA GCG-GAACG TTTTAGTTTTCTTTT Aflv_2543 2517529 - 2517185 - | Predicted membrane protein TERM 3972 2517435 - 2517421 - G 73 -5.6 -4.52747 | opp_overlap 2517433, overlap 2517433 GAAAAGACAAAAGAA CGCTTG CAA CGAGCG CTGCACCAACGCTTG pspC 2517723 - 2517526 - | Phage shock protein C TERM 3973 2518250 - 2518260 + r 76 -2.4 -5.40072 | AGCCGGGTATTTTTT AGCC TTC GGCG TTTTTTTCAAAACAA Aflv_2545 2519480 - 2519157 - | Uncharacterized membrane protein TERM 3974 2519572 - 2519552 - R 100 -13.3 -6.95634 | opp_overlap 2519550 GCAAAAAAAAAAAAA CCGAGCGCA TTA TACGCTCGG TATACGTTGACGCAT uvrA 2522413 - 2519561 - | Excinuclease ABC (subunit A, ATPase) uvrB 2524390 - 2522417 - | Excinuclease ABC (subunit B, helicase) TERM 3975 2522522 - 2522536 + g 72 -7.1 -3.9693 | TTCCAGTTTGGCGAT GAGCG CAACA CGCTC TTCTTTCGATAAATG TERM 3976 2524497 - 2524480 - R 100 -9.1 -5.626 | opp_overlap 2524480 2524496 TATTCTATAAAAAAA CCTGCCC ATTT GGACAGG TTTACGACCGTTTTT csbA 2524723 - 2524499 - | hypothetical protein Aflv_2549 2525943 - 2524726 - | Membrane protein containing C-terminal PDZ domain Aflv_2550 2526023 - 2526481 + | Predicted transcriptional regulator TERM 3977 2526514 - 2526484 - T 90 -10.5 -4.36914 | gap 1, opp_overlap 2526486, overlap 2526486 CTTCTTTTTATAAAA TATCCCCCT-GCCT ATAA AGGCGAGGGGGATT TTGTTTATTTTCCAA TERM 3978 2526486 - 2526512 + T 100 -13.1 -5.26247 | gap 1, opp_overlap 2526484 2526486 TCTTTTTATAAAATA TCCCCCT-GCCT ATAA AGGCGAGGGGGA TTTTGTTTATTTTCC TERM 3979 2526512 - 2526486 - T 100 -13.1 -3.79419 | gap 1, opp_overlap 2526486, overlap 2526484 TCTTTTTATAAAATA TCCCCCT-GCCT ATAA AGGCGAGGGGGA TTTTGTTTATTTTCC Aflv_2551 2527994 - 2526519 - | Periplasmic protease TERM 3980 2527646 - 2527633 - G 71 -6.7 -4.17316 | opp_overlap 2527637, overlap 2527636 ATTCCTTCAAAAGAA GAGTC GAGC GACTC GTTAAATCGTTCCGC TERM 3981 2527985 - 2528011 + g 100 -9.4 -4.80487 | opp_overlap 2527987, overlap 2527987 CCCTTCGATACATGA AAGGCATCACAC CGT GTGCGATGCCTG TTTGTTTTCATTATA TERM 3982 2528009 - 2527987 - G 100 -14.2 -3.88498 | opp_overlap 2527985 2527987 CTTCGATACATGAAA GGCATCACAC CGT GTGCGATGCC TGTTTGTTTTCATTA TERM 3983 2527987 - 2528009 + g 100 -12 -3.99559 | opp_overlap 2527987, overlap 2527985 CTTCGATACATGAAA GGCATCACAC CGT GTGCGATGCC TGTTTGTTTTCATTA TERM 3984 2528175 - 2528155 - R 100 -6.1 -5.76633 | CTAGACAGAAAAAAA GACCCCTTT CAC AACGGAGTC GATTTATCACTTTTT Aflv_2552 2528640 - 2528182 - | Serine/threonine protein kinase related protein Aflv_2553 2529582 - 2528656 - | hypothetical protein Aflv_2554 2530000 - 2529602 - | hypothetical protein TERM 3985 2530336 - 2530326 - g 84 -2.6 -5.69379 | opp_overlap 2530326 ATAGAACTAAAAAAA TTAT TGG ATAA ATTTAGAAACCTCCC Aflv_2555 2530239 - 2531969 + | Predicted transcriptional regulator TERM 3986 2532085 - 2532121 + T 91 -11.1 -4.51847 | overlap 2532118 GTTGTAGGATTTTAG TGAAAGACATCGGTT AGATTTA AATCGGTGTCTTTCA TTTTATGGATTATTT TERM 3987 2532275 - 2532309 + T 100 -10 -5.95539 | opp_overlap 2532277, overlap 2532276 2532277 ATCTCCTTGATCAAA AAGGCGGATCCGAA ATGAGCG TTCGGATCCGCCGA TTTTTTTATTTCAAC TERM 3988 2532276 - 2532308 + T 100 -13.5 -4.15696 | opp_overlap 2532277, overlap 2532275 2532277 TCTCCTTGATCAAAA AGGCGGATCCGAA ATGAGCG TTCGGATCCGCCG ATTTTTTTATTTCAA TERM 3989 2532307 - 2532277 - T 100 -17 -4.72272 | opp_overlap 2532276 2532275 2532277 CTCCTTGATCAAAAA GGCGGATCCGAA ATGAGCG TTCGGATCCGCC GATTTTTTTATTTCA TERM 3990 2532277 - 2532307 + T 100 -17 -3.07791 | opp_overlap 2532277, overlap 2532276 2532275 CTCCTTGATCAAAAA GGCGGATCCGAA ATGAGCG TTCGGATCCGCC GATTTTTTTATTTCA Aflv_2556 2533646 - 2532315 - | Predicted secreted protein TERM 3991 2532609 - 2532630 + g 86 -8.9 -4.33621 | AGCTTCTATTTCCAT TATGAAAGA TAAT TCTTTCATA TTTATTAATTGAATA TERM 3992 2533745 - 2533718 - R 100 -15 -4.74706 | TTTAACATGTAAAAA CGCACAGTCTCA TTGT TGAAACTGTGCG CAGCCTCGTTAAAAT Aflv_2557 2535016 - 2533754 - | Uncharacterized conserved protein containing peptidase M23/M37 family domain ftsX 2535935 - 2535036 - | Cell division protein TERM 3993 2535504 - 2535514 + g 82 -3.2 -5.4251 | TGGCAACGGTTCAAT TTGC TTT GCGA TTTTTTCTGTATCAA ftsE 2536668 - 2535919 - | ATPase involved in cell division TERM 3994 2536335 - 2536290 - G 80 -9.9 -3.62597 | GCGATTCTTCAATAA CTTCCAAAGCAAACGCCACAT TTTC ATATACCGTTAACTTTGGAAG AAGCTTAAAGTCTTG TERM 3995 2536738 - 2536769 + r 88 -8.1 -5.1101 | opp_overlap 2536742, overlap 2536742 AGAGTGTTACAAACG AAAAGAGGATGCT CCCATT GGCATCCTCTTTA TTTTTTCGCTGCTAA TERM 3996 2536765 - 2536742 - R 82 -8.2 -4.61873 | opp_overlap 2536738 2536742 TGTTACAAACGAAAA GAGGATGC TCCCATTG GCATCCTC TTTATTTTTTCGCTG TERM 3997 2536742 - 2536765 + r 90 -8.9 -5.0666 | opp_overlap 2536742, overlap 2536738 TGTTACAAACGAAAA GAGGATGCT CCCATT GGCATCCTC TTTATTTTTTCGCTG cccB 2537093 - 2536767 - | Cytochrome c551 TERM 3998 2536937 - 2536954 + g 84 -2.7 -5.60993 | gap 1 CTTCTAAGTTTTGTC CGTG-GCA GCT TGCACATG TTTTTTTGTAAACGG TERM 3999 2536992 - 2537009 + g 79 -6.9 -4.66163 | AGCTGAAGCTGTATC CCCGCCA CCGT TGGCTGG TTTTTCGCTCGCGCT Aflv_2561 2538042 - 2537152 - | hypothetical protein TERM 4000 2537939 - 2537925 - G 74 -9.2 -3.36188 | overlap 2537920 2537934 ATAAATTAAACGCAA CGGCCA CAA CGGCCG AGCCGACAAGAATGT TERM 4001 2538153 - 2538135 - R 90 -8.8 -4.88495 | opp_overlap 2538135 ACATACACAACAAAA GGTGCCCA TGT CGGACACC TTATCCTTGTTTTAA prfB 2539143 - 2538154 - | Protein chain release factor B TERM 4002 2538294 - 2538318 + g 77 -5 -5.06414 | opp_overlap 2538294 2538297, overlap 2538298 GAAACACATAAGAAC GGATTTGGCT TCCCC AGCCAATTTC TTTTTGTTCGCCGCG TERM 4003 2538298 - 2538314 + g 86 -6.6 -5.05606 | opp_overlap 2538297 2538294, overlap 2538294 CACATAAGAACGGAT TTGGCT TCCCC AGCCAA TTTCTTTTTGTTCGC TERM 4004 2539347 - 2539318 - R 90 -12.3 -3.68988 | gap 1, opp_overlap 2539323, overlap 2539323 GCGGACGCAACATAA CGA-AAGCGAGGGA ACA TCCCTCACTTATCG TCCGCAACAATGTTT TERM 4005 2539323 - 2539341 + r 70 -8.8 -3.40403 | opp_overlap 2539318 2539323 CGCAACATAACGAAA GCGAGGGA ACA TCCCTCAC TTATCGTCCGCAACA TERM 4006 2539341 - 2539323 - R 88 -11 -4.08221 | opp_overlap 2539323, overlap 2539318 CGCAACATAACGAAA GCGAGGGA ACA TCCCTCAC TTATCGTCCGCAACA secA 2541912 - 2539342 - | Preprotein translocase subunit SecA (ATPase, RNA helicase) TERM 4007 2539566 - 2539550 - G 79 -10.9 -3.01791 | overlap 2539553 ACTTCTTCTTCAATA GAAGCGA TCA TCGCTTC AAACATCGCATATCC TERM 4008 2541956 - 2541935 - R 93 -5.8 -5.67711 | overlap 2541936 GAAAGAAAAGAAAAA GCCAGCGT AGGATG ACGCTGGG GAGATGTTATCGTTG TERM 4009 2541955 - 2541936 - R 83 -9.3 -3.96966 | overlap 2541935 AAAGAAAAGAAAAAG CCAGCGT AGGATG ACGCTGG GGAGATGTTATCGTT Aflv_2564 2542607 - 2541963 - | Uncharacterized conserved protein containing internal repeats TERM 4010 2542288 - 2542269 - G 81 -9.3 -3.74693 | TTCCATGTTAGCAAA TCGCGCA TCAATT TGCGCGA ACCGTTCATCAATTT TERM 4011 2542644 - 2542614 - R 90 -13.4 -2.85351 | opp_overlap 2542613 2542611 2542640 TCCTTTCACATGATA CCACCCTCTGTC TTCATTT GACAGAGGGTGA ATAGGTTAGTTCGCT Aflv_2565 2543198 - 2542650 - | Ribosome-associated protein Y (PSrp-1) TERM 4012 2543940 - 2543927 - g 77 -4.5 -5.00616 | overlap 2543931 CTTTGGGCGAAAAAA GGACC GCTC AGTCC CGATGAACGCCGAAT Aflv_2566 2543330 - 2544454 + | HD-GYP domain protein TERM 4013 2544430 - 2544448 + T 71 -6.6 -4.07568 | opp_overlap 2544425 2544430 ACGAAAAGAAGTGAA CGTCACGA TTG TCGAGGCG TTTTAAACAACAAGG TERM 4014 2544503 - 2544462 - T 91 -11.8 -4.08557 | gap 2, opp_overlap 2544462 CGTTTTAAACAACAA GGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGTTTAAAA TERM 4015 2544462 - 2544503 + T 100 -14 -4.49756 | gap 2, opp_overlap 2544462 CGTTTTAAACAACAA GGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGTTTAAAA Aflv_2567 2544967 - 2544578 - | hypothetical protein Aflv_2568 2545327 - 2544977 - | Flagellar protein TERM 4016 2545218 - 2545188 - G 93 -12.6 -3.0263 | opp_overlap 2545179 AGCATTGTCGGAAGA TGCTTGAGTAGCTG TTC CCGCTTCTCAAGCA TGACCTCCACTTGTT fliS 2545728 - 2545327 - | Flagellin-specific chaperone FliS fliD 2547292 - 2545745 - | Flagellar capping protein TERM 4017 2546248 - 2546266 + g 75 -3.2 -5.11112 | opp_overlap 2546241 AAATCGAATCGCCAC GCAAAA TACCGCT TTTTGC TTTTTCTTCCCATTT TERM 4018 2546338 - 2546349 + g 78 -5.8 -4.75954 | TCAGCGGCTGATAGT CACG ATAG CGTG TTTCTTTTAACTTTT TERM 4019 2546553 - 2546567 + g 74 -4.2 -4.94262 | opp_overlap 2546553 CCGTTAATTGTAAAT TGGGCA TTT TGACCA TTTGTTTTTCCTGTC TERM 4020 2546969 - 2546985 + g 77 -10.9 -2.8383 | CGACGTCCATCTCGC CGCAGTT GCC AACTGCG TAATATTGCTTATTT TERM 4021 2547148 - 2547163 + g 78 -9 -3.75153 | opp_overlap 2547137, overlap 2547137 ACAAGCGGTTCATAT CGCGAT ATGC ATCGCG TTTCCATTCGAGCAG Aflv_2571 2547687 - 2547310 - | Uncharacterized flagellar protein FlaG TERM 4022 2547783 - 2547766 - R 100 -9.1 -5.93252 | GGGAAAAAGAAAAAA CCCCTCG CATT CGAGAGG CTAGACATCACACCA Aflv_2572 2548899 - 2547805 - | Glycosyl transferase involved in cell wall biogenesis tagD 2549411 - 2548971 - | Glycerol-3-phosphate cytidylyltransferase tagB 2551775 - 2549466 - | Glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TERM 4023 2551380 - 2551367 - G 70 -2.5 -5.00884 | opp_overlap 2551367 ATTTTGTCCAAAAAA TATTA GAGA TAATA TCTTTCTTTGCTTCT Aflv_2575 2553836 - 2551881 - | Glycosyl transferase fused to TPR repeats Aflv_2576 2554071 - 2555000 + | LAGLIDADG family DNA endonuclease TERM 4024 2554999 - 2555033 + T 72 -9.4 -2.93853 | opp_overlap 2555004, overlap 2555004 CCATCTATAATGTAT AAAAAGAGACCCTGCA AAA TTTAGGGTCTCTTTTC GTTTCATTAACGGAG TERM 4025 2555004 - 2555028 + T 88 -9.3 -4.62054 | opp_overlap 2555004, overlap 2554999 TATAATGTATAAAAA GAGACCCTGCA AAA TTTAGGGTCTC TTTTCGTTTCATTAA TERM 4026 2555028 - 2555004 - T 85 -7.2 -4.93318 | opp_overlap 2555004 2554999 TATAATGTATAAAAA GAGACCCT GCAAAATTT AGGGTCTC TTTTCGTTTCATTAA TERM 4027 2556629 - 2556642 + T 72 -4.5 -4.83169 | overlap 2556628 TTGAATTTGTTTTTC CCACG TCCG TGTGG TTTTTCTGGCAAGAT Aflv_2579 2556928 - 2556740 - | hypothetical protein csrA 2557163 - 2556915 - | RNA-binding global regulator CsrA Aflv_2581 2557613 - 2557176 - | hypothetical protein Aflv_2582 2558181 - 2557627 - | Uncharacterized membrane protein flgL 2559068 - 2558196 - | Flagellar hook-associated protein flgK 2560621 - 2559080 - | Flagellar hook-associated protein TERM 4028 2559776 - 2559764 - G 79 -7.7 -4.27584 | opp_overlap 2559763 ATTTCCAAGTGAAAA GCCAA CAA TTGGC CCTGTTTTTGTCACA Aflv_2585 2561086 - 2560634 - | Uncharacterized membrane protein flgM 2561358 - 2561101 - | Negative regulator of flagellin synthesis (anti-sigma28 factor) TERM 4029 2561434 - 2561416 - R 70 -2.5 -5.02074 | TTATCGGCTAAAAAA GAAAAAT GTTTA ATCTTTC TTCTTTTGTTGTGTA Aflv_2587 2561835 - 2561425 - | Uncharacterized membrane protein Aflv_2588 2562291 - 2561845 - | hypothetical protein TERM 4030 2562358 - 2562335 - R 90 -5.3 -5.65177 | gap 1, opp_overlap 2562336 ACACGTACAAAAAAA GGGCGAGGTC GCTTT GACCT-ACCC TTTTTATCCATTAGC TERM 4031 2562336 - 2562358 + r 71 -4 -4.91712 | opp_overlap 2562335 CACGTACAAAAAAAG GGCGAGGTCG CTT TGACCTACCC TTTTTATCCATTAGC Aflv_2589 2564225 - 2562369 - | Flagellin protein FliA(H) TERM 4032 2563431 - 2563443 + gr 75 -2.7 -5.20216 | AAACGTGCTATCATT TGCAA TAA TTGTA TTTTTTAATGCTGTC TERM 4033 2563994 - 2564032 + gr 74 -3.8 -5.02074 | TGGCGTCTAGGGCGT TGCGCTCGGCCATTTG CAACCCC CGAATTTGCGAGCGCA TTTTTTCAGAAATCG fliS 2564640 - 2564200 - | Flagellin-specific chaperone FliS Aflv_2591 2564960 - 2564673 - | Uncharacterized protein containing cytoplasmic domain of flagellar protein FhlB Aflv_2592 2569717 - 2564957 - | Metal-dependent peptidase TERM 4034 2566487 - 2566509 + gr 77 -10.6 -2.84504 | overlap 2566484 TGTTAACGTCATCGT TTGCTGCTCG AGG CGATCAGCAA TCATATTTGCGCGAT TERM 4035 2567893 - 2567905 + gr 75 -9.1 -3.57971 | CCAATTCCCTTACTT GCGGT TCT ACCGC TTTCACGGTCGGTGT comFC 2570336 - 2569668 - | Competence protein FC TERM 4036 2570025 - 2570002 - GR 77 -3.9 -5.09204 | overlap 2570015 ACATCCGAAGAAAAA TGTTCATCA AACACG CGACGAACA TCGTGACGAAACGCT comFA 2571673 - 2570333 - | Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) TERM 4037 2570397 - 2570407 + g 74 -6.8 -4.32046 | opp_overlap 2570386 ATATGACGCTTGGCG GCGA TCA TCGC TTTCGTTTTTCCAAA TERM 4038 2570449 - 2570433 - G 85 -2.2 -5.79588 | overlap 2570435 CCAAAATGAAAAAAA CGGACA TCACC TGTCGG ATACTGAGCACTTCG TERM 4039 2571686 - 2571708 + r 89 -12 -3.72742 | opp_overlap 2571686, overlap 2571689 CACCCCACTAAAAAA GAAGTGGACG ATG CGCCCACTTC TTCTATTCGTGCTAA TERM 4040 2571708 - 2571686 - R 100 -14.2 -5.15634 | opp_overlap 2571686 2571689 CACCCCACTAAAAAA GAAGTGGACG ATG CGCCCACTTC TTCTATTCGTGCTAA TERM 4041 2571689 - 2571705 + r 75 -7.9 -3.98627 | opp_overlap 2571686, overlap 2571686 CCCACTAAAAAAGAA GTGGACG ATG CGCCCAC TTCTTCTATTCGTGC Aflv_2595 2572582 - 2571740 - | hypothetical protein TERM 4042 2571950 - 2571961 + g 89 -7.2 -5.03314 | AAACAACTCTTCGAT GCGC TGGA GCGC TTTTTTACGCGTACG TERM 4043 2572493 - 2572475 - G 70 -9.6 -2.78715 | AATCTCTTCACGATA CGTCTCTG TTC CAAAGACG ACGCTTAAAGGAATG Aflv_2596 2573174 - 2572779 - | Transposase TERM 4044 2573187 - 2573197 + r 70 -3.2 -4.94058 | overlap 2573165 CATGAAACGGTTTTC TTGC CCA GCGA TTTTCTTTAGCTTGC Aflv_2597 2573460 - 2573215 - | Pedicted protein TERM 4045 2573494 - 2573443 - G 100 -12.5 -6.4275 | gap 2, opp_overlap 2573449, overlap 2573445 GAAAAATAAAAAAAA GAGCCATTCCTCCCCCACCTTCC CTTCACTT AGA-GGTGGGGGAGGAATTGC-C TAATGCCGTTGAAAA TERM 4046 2573493 - 2573445 - G 100 -16.2 -4.77908 | gap 1, opp_overlap 2573449, overlap 2573443 AAAATAAAAAAAAGA GCCATTCCTCCCCCACCTTCC CTTCACTT AGA-GGTGGGGGAGGAATTGC CTAATGCCGTTGAAA TERM 4047 2573449 - 2573489 + g 100 -14.9 -3.10012 | opp_overlap 2573445 2573443 TAAAAAAAAGAGCCA TTCCTCCCCCACCTT CCCTTCACTTA GAGGTGGGGGAGGAA TTGCCTAATGCCGTT TERM 4048 2573511 - 2573534 + r 78 -11.1 -2.9732 | opp_overlap 2573511, overlap 2573508 AATGCCGTTGAAAAA GGTTGTCGA ATCCAC TCGACAACC TCATTTCACTTCGAC TERM 4049 2573534 - 2573511 - R 95 -11.8 -4.57341 | opp_overlap 2573511 2573508 AATGCCGTTGAAAAA GGTTGTCGAA TCCA CTCGACAACC TCATTTCACTTCGAC degU 2574317 - 2573535 - | DNA-binding response regulator, NarL family (REC-HTH domains) degS 2575384 - 2574239 - | Signal transduction histidine kinase TERM 4050 2574404 - 2574418 + gH 86 -4.3 -5.51402 | opp_overlap 2574381, overlap 2574383 2574381 ATCGTCTTTTACGAC GATCA GCAAA TGATC TTTTTTTAGCTCTAT TERM 4051 2574959 - 2574946 - GH 70 -8.1 -3.68726 | opp_overlap 2574945 2574958 AATAGTTTAACACAA CGGTC ACTT GACCG ATTAAATGGTCTGCC TERM 4052 2574958 - 2574984 + gH 73 -5.9 -4.41348 | opp_overlap 2574946, overlap 2574945 CAACGGTCACTTGAC CGATTAAATGG TCTGC CCGTTCAATCG TTTCTTTGACAGCCG TERM 4053 2575409 - 2575397 - H 85 -4.1 -5.65927 | overlap 2575401 CACCTAAAGAAAAAA TGACC AAA AGTCA AACAAAACGACTTTT Aflv_2600 2575569 - 2576207 + | hypothetical protein Aflv_2601 2576301 - 2577323 + | Transcriptional regulator TERM 4054 2577310 - 2577365 + T 100 -31 -3.47063 | opp_overlap 2577318 2577321 2577326, overlap 2577311 2577318 2577321 2577326 AAACCGAACAATTCG CTCAAGAACAATGAAAGAGGGTGTCT CGCG AGACACCCTCTTTCATTGTTCTTGAA TTATGAAATTTTTTT TERM 4055 2577311 - 2577364 + T 100 -34.5 -2.66611 | opp_overlap 2577318 2577321 2577326, overlap 2577310 2577318 2577321 2577326 AACCGAACAATTCGC TCAAGAACAATGAAAGAGGGTGTCT CGCG AGACACCCTCTTTCATTGTTCTTGA ATTATGAAATTTTTT TERM 4056 2577357 - 2577318 - T 100 -25.4 -3.62522 | opp_overlap 2577318 2577311 2577310 2577321 2577326, overlap 2577321 2577326 CAATTCGCTCAAGAA CAATGAAAGAGGGTGTCT CGCG AGACACCCTCTTTCATTG TTCTTGAATTATGAA TERM 4057 2577318 - 2577357 + T 100 -25.4 -3.75766 | opp_overlap 2577318 2577321 2577326, overlap 2577311 2577310 2577321 2577326 CAATTCGCTCAAGAA CAATGAAAGAGGGTGTCT CGCG AGACACCCTCTTTCATTG TTCTTGAATTATGAA TERM 4058 2577321 - 2577354 + T 100 -21.3 -4.00097 | opp_overlap 2577318 2577321 2577326, overlap 2577318 2577311 2577310 2577326 TTCGCTCAAGAACAA TGAAAGAGGGTGTCT CGCG AGACACCCTCTTTCA TTGTTCTTGAATTAT TERM 4059 2577354 - 2577321 - T 100 -21.3 -3.9461 | opp_overlap 2577321 2577318 2577311 2577310 2577326, overlap 2577318 2577326 TTCGCTCAAGAACAA TGAAAGAGGGTGTCT CGCG AGACACCCTCTTTCA TTGTTCTTGAATTAT TERM 4060 2577326 - 2577349 + T 100 -15.4 -4.14945 | opp_overlap 2577321 2577318 2577326, overlap 2577321 2577318 2577311 2577310 TCAAGAACAATGAAA GAGGGTGTCT CGCG AGACACCCTC TTTCATTGTTCTTGA TERM 4061 2577349 - 2577326 - T 100 -15.4 -4.14945 | opp_overlap 2577326 2577321 2577318 2577311 2577310, overlap 2577321 2577318 TCAAGAACAATGAAA GAGGGTGTCT CGCG AGACACCCTC TTTCATTGTTCTTGA tagO 2578418 - 2577366 - | UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase TERM 4062 2578781 - 2578765 - H 70 -3.6 -4.96501 | overlap 2578767 GCTGACAAAAATAAA CCCGCT AAATG AGCGCG TCACGAAACTTGAAC TERM 4063 2579419 - 2579398 - g 71 -2.3 -5.15969 | overlap 2579399 GCTCAATTGAAAAAA TCATCATTT TTGC AAATGACGG TGGCGAGCCAAGTGT Aflv_2603 2578861 - 2580207 + | hypothetical protein TERM 4064 2580233 - 2580200 - T 100 -13.3 -5.95166 | opp_overlap 2580205, overlap 2580201 2580205 TCGAAGTAAAAAAAA TCAAATAGGCTGTGC ACAT GCACAGCCTATTTAT TTTGTAGCGCTCGAT TERM 4065 2580232 - 2580201 - T 100 -16.8 -4.15473 | opp_overlap 2580205, overlap 2580200 2580205 CGAAGTAAAAAAAAT CAAATAGGCTGTGC ACAT GCACAGCCTATTTA TTTTGTAGCGCTCGA TERM 4066 2580205 - 2580228 + T 100 -15.4 -4.77173 | opp_overlap 2580201 2580200 2580205 GTAAAAAAAATCAAA TAGGCTGTGC ACAT GCACAGCCTA TTTATTTTGTAGCGC TERM 4067 2580228 - 2580205 - T 100 -15.4 -4.59251 | opp_overlap 2580205, overlap 2580201 2580200 GTAAAAAAAATCAAA TAGGCTGTGC ACAT GCACAGCCTA TTTATTTTGTAGCGC Aflv_2604 2580975 - 2580226 - | S-layer-like domain-containing protein Aflv_2605 2582428 - 2580986 - | N-acetylmuramoyl-L-alanine amidase containing SLH domains TERM 4068 2582659 - 2582685 + r 86 -2.2 -6.00086 | overlap 2582660 GTTGCTAAGTCAGCC TCCCCACC CATATGGAAAC GGTGGGGC TTTTTTTTATGCTGT Aflv_2606 2584926 - 2582692 - | Subtilisin-type proteinase with two SLH domains TERM 4069 2583753 - 2583743 - G 71 -2.4 -5.14563 | opp_overlap 2583744, overlap 2583744 GTGCTTATTAAAAAA TCCC CAG GGGC GCTTACTTCTACGTC Aflv_2607 2585103 - 2587025 + | Protein ushA precursor (two S-layer domains; UDP-sugar hydrolase; 5'-nucleotidase) TERM 4070 2587045 - 2587028 - f 81 -6.9 -4.80178 | opp_overlap 2587028, overlap 2587023 CACGAATCAATAAAA GACGTCC AACC GGGCGTC TTTTTTTACTTCAAA TERM 4071 2587028 - 2587045 + F 100 -9.1 -5.63103 | opp_overlap 2587028 2587023 CACGAATCAATAAAA GACGTCC AACC GGGCGTC TTTTTTTACTTCAAA TERM 4072 2588110 - 2588098 - g 70 -7.7 -3.59882 | opp_overlap 2588097 AAGGACAACAAGGAA CGATG GAC CATCG CGTATTTGGGTGGCA Aflv_2608 2587113 - 2588951 + | hypothetical protein TERM 4073 2588978 - 2588954 - T 75 -10 -2.94329 | opp_overlap 2588954 2588954 2588957, overlap 2588953 2588957 GACGGTGAAGTAAAC GGAGGCTTCC GCATT GGAAGCCTTC CTTCTTTACATCAAT TERM 4074 2588954 - 2588979 + T 86 -10.5 -3.97331 | gap 1, opp_overlap 2588954 2588953 2588957, overlap 2588954 2588957 GACGGTGAAGTAAAC GGA-GGCTTCCG CAT TGGAAGCCTTCC TTCTTTACATCAATT TERM 4075 2588954 - 2588978 + T 91 -12.9 -2.97676 | opp_overlap 2588954 2588953 2588957, overlap 2588954 2588957 GACGGTGAAGTAAAC GGAGGCTTCCG CAT TGGAAGCCTTC CTTCTTTACATCAAT TERM 4076 2588975 - 2588957 - T 72 -10.3 -2.70979 | opp_overlap 2588954 2588954 2588957, overlap 2588954 2588953 GGTGAAGTAAACGGA GGCTTCC GCATT GGAAGCC TTCCTTCTTTACATC TERM 4077 2588957 - 2588975 + T 83 -11 -3.62723 | opp_overlap 2588957 2588954 2588953, overlap 2588954 2588954 GGTGAAGTAAACGGA GGCTTCCG CAT TGGAAGCC TTCCTTCTTTACATC Aflv_2609 2594956 - 2588984 - | Alpha-amylase/pullulanase (Includes: Alpha-amylase (1,4-alpha-D-glucan glucanohydrolase); Pullulanase (1,4-alpha-D-glucan glucanohydrolase) (Alpha-dextrin endo-1,6-alpha-glucosidase)) TERM 4078 2589999 - 2590015 + g 70 -5.1 -4.42386 | opp_overlap 2589999 ACTTGTGTAAATAAT GTAGCTG GCA CATCTAC TTTTGTGGCTACACC TERM 4079 2591236 - 2591256 + g 79 -3.3 -5.31059 | overlap 2591238 CTTGTGTATCTTCTG TATTTGCGT TAA GCGTAAATG TTTTTTCGTTCGTGT TERM 4080 2594675 - 2594691 + g 75 -3 -5.1356 | gap 1, opp_overlap 2594675 AAACTTGTACATATA CG-TTCC GTTT GGAAGCG TTTTTGTTACTGACC TERM 4081 2594701 - 2594718 + g 74 -4.1 -4.91657 | overlap 2594702 GAAGCGTTTTTGTTA CTGACCA TATA TGGTCAC TTTCTTTTGTTAATT Aflv_2610 2596602 - 2595271 - | Predicted S-layer protein Aflv_2611 2597278 - 2596556 - | Predicted metal-dependent membrane protease, CAAX family TERM 4082 2596778 - 2596764 - GR 73 -3.5 -5.00616 | TTTTTCTCCAAAAAA CGATG GAGAA CACCG CGGAACAAAAGTTCT Aflv_2612 2598947 - 2597289 - | Bacteriocin/lantibiotic exporter, bacteriocin-binding protein TERM 4083 2597738 - 2597756 + g 82 -2.4 -5.72053 | overlap 2597737 2597742 TAATGCGATAGTTTC GAAGTTGA ACT TCAATGTC TTTTTTCTTTCCTTC TERM 4084 2598240 - 2598261 + g 90 -5.9 -5.54907 | opp_overlap 2598239 2598240 2598243, overlap 2598243 TTGATTCGCATAAAC TGATGTAGC ACTC GCTACATAA TTTTTATTTTCTAAA sunT 2601155 - 2598960 - | ABC-type bacteriocin/lantibiotic exporter TERM 4085 2600969 - 2600981 + g 78 -9.1 -3.90588 | opp_overlap 2600964 2600969 TGGCTGTAAACCCAA GCTGC TCT GCAGC TTTAATTAAACCGTA TERM 4086 2600981 - 2600969 - G 71 -9.1 -3.27525 | opp_overlap 2600969, overlap 2600964 TGGCTGTAAACCCAA GCTGC TCT GCAGC TTTAATTAAACCGTA TERM 4087 2601166 - 2601152 - G 70 -2.8 -5.04249 | TGCTGAAAAAAGAAA GCATAG TAA CTACAC CTCAAAAAGTTAAAA Aflv_2614 2601553 - 2601206 - | Predicted membrane protein TERM 4088 2601619 - 2601561 - R 83 -12.7 -2.70298 | opp_overlap 2601563 CCTTTCAACGATAAC TCCCTTTCTTCCTCTACTCATGGTGCT TAACT AACACCATGAATAGAGGAAACTAAGAA TTTATTGAGGCTGTT Aflv_2615 2601906 - 2601634 - | Predicted bacteriocin, lactobin A family Aflv_2616 2602193 - 2601954 - | Predicted bacteriocin, lactococcin A1 family Aflv_2617 2602641 - 2602420 - | Uncharacterized small membrane protein Aflv_2618 2602898 - 2602689 - | Predicted bacteriocin, lactococcin A1 family TERM 4089 2603311 - 2603296 - g 71 -4.8 -4.58085 | ATATGCATAAACAAA TGAATT ATGA AATTCA ACGTTTTTCATTTCA TERM 4090 2603575 - 2603586 + G 75 -3 -5.15969 | opp_overlap 2603575 TGATTAGTGCAAATA TAGA ACGC TCTA TTTTTTCGGTTAGGC Aflv_2619 2603043 - 2604104 + | hypothetical protein TERM 4091 2604571 - 2604561 - g 71 -4 -4.80882 | opp_overlap 2604561 ACCCTATATTAAAAA GAAA TCG TTTC TTTACAAATCTTATT kinA 2604101 - 2605438 + | Sporulation histidine kinase A TERM 4092 2605907 - 2605889 - g 87 -4.6 -5.5074 | CAAGTTAAGAAAAAA GGAACA AATGACA TGTTCC TTGACGAAAACTGAA TERM 4093 2606061 - 2606048 - g 79 -6.7 -4.62471 | opp_overlap 2606048, overlap 2606051 GCTAAGTGCGAAAAA CAGCA AACA TGCTG TATGTAAAGCGAGGG yvqC 2605452 - 2606093 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 4094 2606432 - 2606418 - f 74 -6.4 -4.46212 | overlap 2606420 CGCGCTATCACAAAA TCGCTC GTC AAGCGA ACAAAAGAAATCGTT Aflv_2622 2606946 - 2607380 + | hypothetical protein Aflv_2623 2607625 - 2608005 + | Transposase TERM 4095 2608036 - 2608006 - T 93 -12.6 -3.83985 | overlap 2608009 2608026 TACAAAAAAGGATAA GAAGCCATAGCACG TGA CAAGCTATGGCTCC ACCATATCGGCAAAG TERM 4096 2608033 - 2608009 - T 88 -10.7 -4.00262 | overlap 2608006 2608026 AAAAAAGGATAAGAA GCCATAGCACG TGA CAAGCTATGGC TCCACCATATCGGCA TERM 4097 2609323 - 2609301 - T 100 -9.9 -6.14618 | CATAAAATAAAAAAA GCTGAGTGC GGTGA ACACTCAGC AGGCAACTACATGCC TERM 4098 2609375 - 2609431 + T 75 -7.7 -4.03234 | gap 2, opp_overlap 2609381, overlap 2609381 TAGATGTGTAATAGC TAAAGAGAAATAACCGTTTCACACCTT TGGTC GAGG-G-GGGACGGTTATTTCTTTTTG TTTATATAGACGCCG TERM 4099 2609381 - 2609425 + T 93 -6.7 -5.42975 | gap 2, opp_overlap 2609381, overlap 2609375 TGTAATAGCTAAAGA GAAATAACCGTTTCACACCTT TGGTC GAGG-G-GGGACGGTTATTTC TTTTTGTTTATATAG TERM 4100 2610030 - 2610004 - T 100 -12.4 -5.01811 | opp_overlap 2610004 TCACCAAATCAAAAA GCAACACACTCA CAT TGAATGCGTTGC TTCTATCCAGCCTTG Aflv_2624 2610424 - 2610056 - | PIN domain protein Aflv_2625 2610671 - 2610411 - | hypothetical protein TERM 4101 2611907 - 2611932 + r 70 -8.3 -3.28712 | opp_overlap 2611907 TAATCCTCTTGATAA GGGGAAGGGTT TACC AACCATTCTCC TTATCAAGAGGCCAC TERM 4102 2612154 - 2612196 + r 72 -9.2 -3.29511 | opp_overlap 2612154, overlap 2612164 TACCTCTCCTCAGAA CTCCGTGGATCTGTCAAG TGCTTTC CTTGACAGTTTCACAGGG TTCTGAGACACTGAA TERM 4103 2612263 - 2612226 - R 91 -10 -4.62069 | opp_overlap 2612225 2612235 2612236 2612238, overlap 2612231 AAAAAGACGAGAAAA GGAAAGGAACCAGAGT TCTATC ACTCTGATTCCTTCAC ATTAACTGAATTTAT TERM 4104 2612258 - 2612231 - R 90 -10.7 -4.28487 | opp_overlap 2612225 2612235 2612236 2612238, overlap 2612226 GACGAGAAAAGGAAA GGAACCAGAGT TCTATC ACTCTGATTCC TTCACATTAACTGAA Aflv_2626 2613117 - 2612290 - | Transposase TERM 4105 2612542 - 2612527 - G 70 -2.6 -5.02476 | gap 1, opp_overlap 2612528, overlap 2612528 2612529 ATATGTTTCAAAAAA GCCGATT AAT AATCG-C TGCTTTGCTTCGTCT TERM 4106 2613216 - 2613192 - H 79 -5.7 -4.8622 | opp_overlap 2613192 TTTGGGAATGAAAAA CAGAGAGCCAC TCA ACAACTCTCTG TGTCTGTCAATCTTC Aflv_2627 2613327 - 2613641 + | Transposase Aflv_2628 2613722 - 2614498 + | Transposase TERM 4107 2614557 - 2614599 + T 72 -9.2 -3.29511 | opp_overlap 2614557, overlap 2614567 GACCTCTCCTCAGAA CTCCGTGGGGCTGTCAAG TGCTCTC CTTGACAGTTTCACAGGG TTCTGAGACACTAGG TERM 4108 2614666 - 2614630 - T 81 -7.4 -4.62069 | gap 1, opp_overlap 2614635, overlap 2614635 AAAAAGACGAGAAAA GGAAAGGAACCAGAGCT GTTT AGCCCTGATTCC-TTCT GGTTAACCGATTTTA TERM 4109 2614635 - 2614662 + T 72 -8.4 -3.51032 | opp_overlap 2614630 2614635 GACGAGAAAAGGAAA GGAACCAGAGCT GTTT AGCCCTGATTCC TTCTGGTTAACCGAT TERM 4110 2614662 - 2614635 - T 100 -12.8 -4.28487 | opp_overlap 2614635, overlap 2614630 GACGAGAAAAGGAAA GGAACCAGAGCT GTTT AGCCCTGATTCC TTCTGGTTAACCGAT Aflv_2629 2615051 - 2614758 - | hypothetical protein Aflv_2630 2615345 - 2615112 - | hypothetical protein TERM 4111 2616646 - 2616608 - g 100 -12.7 -6.04324 | gap 1, opp_overlap 2616612 CGAAAAAATAAAAAA GAAACAGACGGAAATGGC TGCC ACCATTTC-GCCTGTTTC GGTGGAAGTGGATAC Aflv_2631 2615508 - 2616710 + | Transposase TERM 4112 2616795 - 2616817 + G 71 -2 -5.16151 | CAGAATACGCCTCTA CTCATAATAT ATC ATATTCAGAG TTTTTATTCCGTTTA Aflv_2632 2616707 - 2617462 + | IstB-like ATP-binding protein TERM 4113 2617474 - 2617448 - T 89 -6.6 -5.30348 | opp_overlap 2617467 ATCCAACAAGAAAAA CAGAAGGATC AATGAAA GGTCCTTCTG GGGAATTTTAAACCG Aflv_2633 2617949 - 2617635 - | hypothetical protein TERM 4114 2617971 - 2617940 - G 95 -7.2 -5.45802 | overlap 2617941 CTCCTAAAACAAAAA TCGCCCCCATTCCC CGAA AGGAATGGAGGAGT TCAAAAGTATAATAT TERM 4115 2617970 - 2617941 - G 88 -10.7 -3.86397 | overlap 2617940 TCCTAAAACAAAAAT CGCCCCCATTCCC CGAA AGGAATGGAGGAG TTCAAAAGTATAATA TERM 4116 2618049 - 2618017 - R 100 -14.3 -4.59773 | opp_overlap 2618020 2618021 2618023, overlap 2618021 GTTGATGCGGAAAAA GAAACAGAGAGCC GTTCAGT GGCTCTCTGCTTC TCAAGATTTAAGCTA TERM 4117 2618020 - 2618046 + r 75 -9.4 -3.3506 | opp_overlap 2618017 2618021, overlap 2618021 2618023 GATGCGGAAAAAGAA ACAGAGAGCCGT TCA GTGGCTCTCTGC TTCTCAAGATTTAAG TERM 4118 2618045 - 2618021 - R 95 -11.5 -4.86385 | opp_overlap 2618020 2618021 2618023, overlap 2618017 ATGCGGAAAAAGAAA CAGAGAGCC GTTCAGT GGCTCTCTG CTTCTCAAGATTTAA TERM 4119 2618021 - 2618045 + r 90 -12.9 -2.60714 | opp_overlap 2618021 2618017, overlap 2618020 2618023 ATGCGGAAAAAGAAA CAGAGAGCCGT TCA GTGGCTCTCTG CTTCTCAAGATTTAA TERM 4120 2618023 - 2618043 + r 71 -9.7 -2.84015 | opp_overlap 2618021 2618017, overlap 2618021 2618020 GCGGAAAAAGAAACA GAGAGCCGT TCA GTGGCTCTC TGCTTCTCAAGATTT Aflv_2634 2621101 - 2618075 - | S-layer glycoprotein protein, contains three N-terminal SLH domains TERM 4121 2619997 - 2620011 + g 70 -3.6 -4.74706 | overlap 2619998 TTACACCAGAAGTAG TTGTAA TTG TTACAG TTTTTCCATCTTCAG TERM 4122 2620070 - 2620085 + g 93 -9 -4.55849 | TGTCGCTAAAGTACT CGCAGA TGGG TCTGCG TTTCTTTGAATTTTA TERM 4123 2620300 - 2620311 + g 71 -4.4 -4.87291 | TTTTTGTTTTGATCA CAAC AACT GTTG TTTTTGCTTCAGCTG TERM 4124 2622390 - 2622407 + G 74 -4.1 -5.00895 | gap 1, overlap 2622394 AAAGAAACGGTGACG CGCGCGCA ATT TGCG-GTG TTTTTCTATCGTGCG Aflv_2635 2621463 - 2622437 + | Cell wall-associated hydrolase containing three SLH domains TERM 4125 2622435 - 2622463 + T 100 -17.6 -5.43414 | opp_overlap 2622428 2622437 GCGATCAACGCGGAA TAGCGAGGAAGG ACAAG CCTTCCTCGCTA TTTTTTATCTATCGT TERM 4126 2622461 - 2622437 - T 100 -15.8 -3.06737 | opp_overlap 2622435, overlap 2622428 GATCAACGCGGAATA GCGAGGAAGG ACAAG CCTTCCTCGC TATTTTTTATCTATC Aflv_2636 2624062 - 2622461 - | Predicted metal-dependent hydrolase fused to SLH domains TERM 4127 2623837 - 2623855 + g 77 -8.2 -3.95986 | TATTTTTTAGAAGCT CTTGTTCA AGC TGAGCAAG TTTCGTTGCATTCCA TERM 4128 2624129 - 2624153 + rH 79 -8.5 -4.13077 | opp_overlap 2624129, overlap 2624141 2624147 CTGGAAAATGATAAA GGCTGCCTACA TGA TGCAGACAGCC TTTCTGTCATCTATT TERM 4129 2624153 - 2624129 - RH 100 -12.9 -4.208 | opp_overlap 2624129 2624141 2624147 CTGGAAAATGATAAA GGCTGCCTACA TGA TGCAGACAGCC TTTCTGTCATCTATT Aflv_2637 2627622 - 2624164 - | Secreted subtilisin-like serine protease TERM 4130 2624519 - 2624535 + gH 91 -5.1 -5.63517 | opp_overlap 2624519, overlap 2624519 TTGTTTTTCACGACA GATGACG CAT CTTCATC TTTTTTATTTAACGA TERM 4131 2625530 - 2625543 + gH 81 -6.7 -4.68846 | TGATATGGGATCGCT GAAGC AGTT GCTTC TTTTGCTTTGTTGCT Aflv_2638 2627616 - 2627786 + | hypothetical protein TERM 4132 2628044 - 2628060 + GFH 75 -10.1 -3.11289 | opp_overlap 2628044, overlap 2628042 2628041 2628059 CGTGAAGCATCCAAA CGCGTGC TCG GCATGCG TCATTTTGACGTTCA TERM 4133 2628060 - 2628044 - gfH 70 -7.9 -3.71527 | opp_overlap 2628044 2628042 2628041 2628059 CGTGAAGCATCCAAA CGCGTGC TCG GCATGCG TCATTTTGACGTTCA TERM 4134 2629511 - 2629499 - gfH 100 -6.3 -5.59502 | GAAAAAATTAAAAAA TCACT CCA AGTGA ACGATGAAGGCGAAG secA 2627759 - 2630155 + | Preprotein translocase subunit SecA TERM 4135 2630600 - 2630560 - gT 81 -7.5 -4.57837 | opp_overlap 2630563, overlap 2630561 2630563 ACATTCTGCCAAAAA GCAGCCGTCCGTGGCGATT TGT ATTCACCACGAACGACTTA TATACCGAAGACATT TERM 4136 2630599 - 2630561 - gT 81 -11 -3.3422 | opp_overlap 2630563, overlap 2630560 2630563 CATTCTGCCAAAAAG CAGCCGTCCGTGGCGATT TGT ATTCACCACGAACGACTT ATATACCGAAGACAT TERM 4137 2630597 - 2630563 - gT 100 -13.6 -3.23708 | opp_overlap 2630563, overlap 2630561 2630560 TTCTGCCAAAAAGCA GCCGTCCGTGGCGATT TGT ATTCACCACGAACGAC TTATATACCGAAGAC Aflv_2640 2630118 - 2631038 + | hypothetical protein TERM 4138 2631069 - 2631047 - T 100 -12.1 -5.2015 | opp_overlap 2631047 GCAATAAGAGAAAAA GAGCTGATG TTGTT CATCAGCTC TTTTTCTTTGCCTCT TERM 4139 2631047 - 2631069 + T 100 -12.1 -5.31519 | opp_overlap 2631047 GCAATAAGAGAAAAA GAGCTGATG TTGTT CATCAGCTC TTTTTCTTTGCCTCT TERM 4140 2631166 - 2631176 + T 78 -4 -5.22312 | opp_overlap 2631166 TGAGCGTTTAACAAA CATA TTT TATG TTTTTTGGTATAAAT Aflv_2641 2631682 - 2631233 - | hypothetical protein TERM 4141 2631772 - 2631788 + H 73 -2.3 -5.24515 | AAGACTGTTTATTTT TGTTC TGAAAAC GAACA TTTTATTTGTTTGTT TERM 4142 2631858 - 2631822 - g 91 -3.9 -5.80727 | AAAAAGAACAAAAAA TCCGCTTTTCTTCTT CTATCGT AAAAAGAAAAAGGGA ATTTGGTGGAAGATG xre 2631799 - 2632287 + | Predicted transcriptional regulator, xre family Aflv_2643 2632669 - 2632310 - | Uncharacterized low complexity protein, has internal repeats TERM 4143 2632585 - 2632595 + g 75 -5.4 -4.78848 | TGAAGCTTTGCATCT CTTG TTT CAAG TTTTCTATTTCCCCA TERM 4144 2632763 - 2632741 - H 77 -6.3 -4.61485 | CAATTAAAAAAAAGA GGCTAGC GGAGAGGAT GCTAGCC AAACTGTGAGGGAGC Aflv_2644 2633032 - 2633448 + | hypothetical protein TERM 4145 2633435 - 2633466 + T 86 -9.5 -4.13767 | opp_overlap 2633429 2633441, overlap 2633441 AAGAACACATGCATA CGAAAAGAGGCTG ATTATC CAGCCCCTTTTTG TTTTGCAATGACAAC TERM 4146 2633460 - 2633441 - T 80 -7.8 -4.36262 | opp_overlap 2633441 2633435, overlap 2633429 ACATGCATACGAAAA GAGGCTGA TTAT CCAGCCCC TTTTTGTTTTGCAAT TERM 4147 2633441 - 2633460 + T 87 -4.9 -5.46706 | opp_overlap 2633429 2633441, overlap 2633435 ACATGCATACGAAAA GAGGCTG ATTATC CAGCCCC TTTTTGTTTTGCAAT Aflv_2645 2633976 - 2633449 - | Sortase (surface protein transpeptidase) Aflv_2646 2634860 - 2633940 - | Uncharacterized conserved protein probably secreted TERM 4148 2634596 - 2634611 + gr 76 -9 -3.71924 | CACCAAATTGTCCGA GAAGCG CTTC CGCTTC TTCTTGCGTCATTTC Aflv_2647 2635319 - 2634921 - | ACT family regulatory domain TERM 4149 2635042 - 2635058 + g 72 -6.5 -4.26903 | opp_overlap 2635048 TTGACGTTGGCGCGG GCGAAAG CAG CTGTCGC TTTTGCTGCAATACC TERM 4150 2635081 - 2635048 - G 73 -8.9 -3.53012 | gap 1, opp_overlap 2635042 TTGGCGCGGGCGAAA GCAGCTGTCGCTTTTG CTG CAATACCGAC-GCTGC GCTCCATTCCTTCCC Aflv_2648 2636748 - 2635402 - | Aspartokinase TERM 4151 2635523 - 2635539 + g 72 -6.5 -4.26903 | opp_overlap 2635529 TTGACGTTGGCGCGG GCGAAAG CAG CTGTCGC TTTTGCTGCAATACC TERM 4152 2635562 - 2635529 - G 73 -8.9 -3.53012 | gap 1, opp_overlap 2635523 TTGGCGCGGGCGAAA GCAGCTGTCGCTTTTG CTG CAATACCGAC-GCTGC GCTCCATTCCTTCCC Aflv_2649 2637225 - 2636785 - | Uncharacterized conserved predicted metal-binding protein comK 2637748 - 2637266 - | Competence transcription factor (CTF) TERM 4153 2637836 - 2637818 - R 100 -10.3 -5.29445 | TTTTAACAACAAAAA TCCCGGA AAATG TCCGGGA CTAAACAGTAAATTG tlpB 2639945 - 2637837 - | Methyl-accepting chemotaxis protein TERM 4154 2639876 - 2639864 - G 73 -2.7 -5.20783 | overlap 2639865 ACGTAAACATAAAAA TTGTC GCT AACAA CACGAATTTTTTACT TERM 4155 2639960 - 2639975 + r 85 -2.6 -5.86976 | CGCTCCTTACGAAAA CAATAT GTAC GTATTG TTTTTTATTTTATCA TERM 4156 2640047 - 2640020 - R 87 -6.4 -5.25699 | opp_overlap 2640026, overlap 2640026 ATTATATAACAAAAA TAAAAATAGGCC CAAA GACCTATTTTTT ATTCCGAAACAAAGC TERM 4157 2640041 - 2640026 - R 100 -5.4 -5.74684 | opp_overlap 2640026, overlap 2640020 TAACAAAAATAAAAA TAGGCC CAAA GACCTA TTTTTTATTCCGAAA TERM 4158 2640026 - 2640041 + r 79 -3.2 -5.4505 | opp_overlap 2640026 2640020 TAACAAAAATAAAAA TAGGCC CAAA GACCTA TTTTTTATTCCGAAA Aflv_2652 2641145 - 2640039 - | Polysaccharide pyruvyl transferase family protein TERM 4159 2640594 - 2640562 - GR 78 -10 -3.40597 | gap 1, opp_overlap 2640572 2640592 2640593, overlap 2640560 TCCCGTACGGAAACA GCAACAACAGGACGT GTAA ACGAC-TGTTGTTGC CACCAAACTGTTGGC Aflv_2653 2643124 - 2641118 - | Uncharacterized membrane protein TERM 4160 2641992 - 2642004 + gr 86 -7.7 -4.61633 | opp_overlap 2641980 2641976 GAACGTTCAATTGGT GCGAA CGG TTCGC TTTTTCCAAGTATAT TERM 4161 2642275 - 2642290 + gr 83 -9 -4.02707 | AAAATTCCGTCGACA GCAGGA CGTA TCCTGC TTCTTTCCATCTTTC TERM 4162 2642505 - 2642523 + gr 78 -2.3 -5.49809 | opp_overlap 2642504, overlap 2642505 2642506 TTCATTTCATCATAT GCGAGTG GAACG CGCTCGA TTTTTTTCGCATTTC Aflv_2654 2644548 - 2642983 - | Membrane protein involved in the export of O-antigen and teichoic acid TERM 4163 2643324 - 2643302 - GR 75 -10 -3.16921 | overlap 2643306 ATTAAGCCGTACCAA GAAACAAACA GTA TGTTTGTTCC CCATTTGACGAAACA TERM 4164 2643320 - 2643306 - GR 76 -7.2 -4.2461 | overlap 2643302 AGCCGTACCAAGAAA CAAACA GTA TGTTTG TTCCCCATTTGACGA TERM 4165 2643791 - 2643781 - GR 74 -4.6 -4.82855 | GACTAAATTTAAAAA CGGC ATC GCCA GGGCACCGAGCGCAA TERM 4166 2644052 - 2644075 + gr 73 -7.4 -4.09739 | overlap 2644054 AATTGTTCAAGTACT TGTGATGCCG CCGT CGGCTTCATA TTTTCAAGACCTTGA TERM 4167 2644054 - 2644073 + gr 70 -7.8 -3.64488 | overlap 2644052 TTGTTCAAGTACTTG TGATGCCG CCGT CGGCTTCA TATTTTCAAGACCTT TERM 4168 2644454 - 2644443 - GR 72 -4.4 -4.66833 | opp_overlap 2644443 GTGGAATGCGAAAAA TGCT GCCA AGCA CTTTCGAGATGATCG tagA 2645195 - 2644512 - | Teichoic acid biosynthesis protein Aflv_2656 2645348 - 2645944 + | hypothetical protein TERM 4169 2645961 - 2645949 - T 72 -3.3 -5.09225 | opp_overlap 2645949 AGCTCATTTAAAAAA GGGAG GCC CTTCC GCTCCCTTTTACTCT Aflv_2657 2647109 - 2645970 - | Predicted regulatory protein containing Sec_C metal binding and HTH Xre family domains TERM 4170 2647292 - 2647265 - g 73 -2.6 -5.10656 | overlap 2647257 2647266 AGTAAAAGAACAAAA GCCGTTCGGG TATATCGT CACGAACGGA AAAGAAAGCGCCTTG Aflv_2658 2647224 - 2648081 + | Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains Aflv_2659 2648078 - 2649070 + | Predicted dehydrogenase TERM 4171 2649053 - 2649084 + F 100 -8.9 -5.99154 | gap 1, opp_overlap 2649059, overlap 2649056 ATTGTATTTCCTGCT GATGAACATTTCGC CTAAA GCGGAATGTTC-TC TTTTTTTATTTCATG TERM 4172 2649056 - 2649082 + F 95 -11.7 -4.61687 | opp_overlap 2649059, overlap 2649053 GTATTTCCTGCTGAT GAACATTTCGC CTAAA GCGGAATGTTC TCTTTTTTTATTTCA Aflv_2660 2649167 - 2650219 + | Fic (filamentation induced by cAMP) family protein TERM 4173 2650240 - 2650217 - T 79 -11.1 -3.23735 | opp_overlap 2650217 2650220, overlap 2650210 2650220 AAAAAAACTAGTGAA TAAGCGAGC GTCTAT GCTCGCTTA TTTGCCTTCCAAACC TERM 4174 2650217 - 2650240 + T 89 -11.8 -3.75153 | opp_overlap 2650210 2650217 2650220, overlap 2650220 AAAAAAACTAGTGAA TAAGCGAGCG TCTA TGCTCGCTTA TTTGCCTTCCAAACC TERM 4175 2650220 - 2650237 + T 83 -9.1 -4.0098 | opp_overlap 2650217 2650210 2650220, overlap 2650217 AAAACTAGTGAATAA GCGAGCG TCTA TGCTCGC TTATTTGCCTTCCAA TERM 4176 2650237 - 2650220 - T 73 -8.4 -3.72527 | opp_overlap 2650220 2650217, overlap 2650217 2650210 AAAACTAGTGAATAA GCGAGC GTCTAT GCTCGC TTATTTGCCTTCCAA Aflv_2661 2650647 - 2650228 - | VanZ like family protein TERM 4177 2650744 - 2650721 - R 90 -7.4 -5.34555 | opp_overlap 2650721 TTATACGATAAAAAA TCCCTCCCGT GTTA ATGAGAGGGA TCGTGTCTTGCAGCT Aflv_2662 2651922 - 2650819 - | Transcription regulator containing filamentation induced by cAMP family (Fic) domain and ArsR subfamily HTH domain TERM 4178 2653066 - 2653039 - g 77 -6.4 -4.58585 | opp_overlap 2653043, overlap 2653043 2653051 CAGTCAAATAAGAAA CAAACGGTAG AAGAAAAA CTACCGTTTA TCAGCGCAGCTTCGT TERM 4179 2653062 - 2653043 - g 74 -5 -4.82212 | opp_overlap 2653043, overlap 2653039 2653051 CAAATAAGAAACAAA CGGTAG AAGAAAAA CTACCG TTTATCAGCGCAGCT TERM 4180 2653507 - 2653531 + G 78 -9.3 -3.65294 | opp_overlap 2653504 2653513, overlap 2653510 CATTTAAAAGCAGTC GAACAAGCGGA TCG TTCGCTCGTTC TTCCTTTGTATCACC Aflv_2663 2652088 - 2653743 + | Uncharacterized conserved protein containing SWIM zinc finger family domain TERM 4181 2654771 - 2654756 - g 79 -6.8 -4.63486 | gap 1 ACTCGTTGAACAAAA GCGC-CG CCT CGTGCGC ATTCGCGATCAATGG TERM 4182 2655703 - 2655679 - g 72 -6.3 -4.4078 | opp_overlap 2655681, overlap 2655649 2655647 2655681 2655683 TGCGGCGAACGAAAA CAGACGAACGC ATT GCGCTCGACTT GCCTGATAAACTCGA TERM 4183 2655701 - 2655681 - g 78 -8.9 -3.8125 | opp_overlap 2655681, overlap 2655649 2655647 2655679 2655683 CGGCGAACGAAAACA GACGAACGC ATT GCGCTCGAC TTGCCTGATAAACTC TERM 4184 2655699 - 2655683 - g 78 -10.1 -3.48718 | opp_overlap 2655681, overlap 2655649 2655647 2655681 2655679 GCGAACGAAAACAGA CGAACGC ATT GCGCTCG ACTTGCCTGATAAAC Aflv_2664 2653740 - 2656436 + | SWF/SNF family helicase TERM 4185 2656558 - 2656532 - T 100 -12.4 -5.68023 | opp_overlap 2656532 2656536 GGAGAACGAAAAAAA TAAACAGCCGAC GCG ACCGGCTGTTTA TTTTTGAATATAAAA TERM 4186 2656532 - 2656558 + T 93 -11 -4.70659 | opp_overlap 2656532, overlap 2656536 GGAGAACGAAAAAAA TAAACAGCCG ACGCGAC CGGCTGTTTA TTTTTGAATATAAAA TERM 4187 2656536 - 2656554 + T 85 -7.4 -4.89966 | opp_overlap 2656532, overlap 2656532 AACGAAAAAAATAAA CAGCCG ACGCGAC CGGCTG TTTATTTTTGAATAT Aflv_2665 2659612 - 2656556 - | Cation/multidrug efflux pump TERM 4188 2658512 - 2658500 - G 71 -4.1 -4.76191 | overlap 2658501 ATACATTAAAACAAA CGTCA CAA TGACA GAGTACGGAATAGCG TERM 4189 2659492 - 2659474 - G 71 -8.8 -3.29829 | opp_overlap 2659477, overlap 2659477 GATACGTCGCCACAA CAACCCCC ACG GGTGGTTG AATATCAGGAATAAG TERM 4190 2659718 - 2659687 - R 90 -9.6 -4.4448 | opp_overlap 2659694, overlap 2659694 AAATTTGGAAACAAA TAAAAAAGAGGCTA CCTT CAGCCTCTTTTTGA TGCATGCCAACGCCA TERM 4191 2659711 - 2659694 - R 100 -7.7 -5.85425 | opp_overlap 2659694, overlap 2659687 GAAACAAATAAAAAA GAGGCTA CCTT CAGCCTC TTTTTGATGCATGCC TERM 4192 2659694 - 2659711 + r 81 -7 -4.7497 | opp_overlap 2659694 2659687 GAAACAAATAAAAAA GAGGCT ACCTTC AGCCTC TTTTTGATGCATGCC galE 2660720 - 2659704 - | UDP-glucose 4-epimerase TERM 4193 2660356 - 2660345 - G 75 -3 -5.14563 | CTGTCGATGAAAAAA TGAA CCGC TTCA CGCCATACGCCATCA TERM 4194 2660396 - 2660406 + g 71 -3.2 -5.00846 | opp_overlap 2660385 ATAACGTTAATGTCG CAGC AAC GTTG TTTTTATAATATTTC Aflv_2667 2662050 - 2660749 - | UDP-glucose 6-dehydrogenase TERM 4195 2662669 - 2662644 - R 100 -9.8 -5.75342 | opp_overlap 2662644 TTTTCGTAAAAAAAA CAGAGACTCG TCTTCG CGAATCTCTG TTTCAACATAACACT TERM 4196 2662644 - 2662669 + r 72 -8.3 -3.57263 | opp_overlap 2662644 TTTTCGTAAAAAAAA CAGAGACTCGT CTTC GCGAATCTCTG TTTCAACATAACACT rbsB 2663628 - 2662699 - | ABC-type ribose transport system, periplasmic component, contains N-terminal xre family HTH domain rbsC 2664618 - 2663656 - | ABC-type ribose transport system, permease component TERM 4197 2664035 - 2664047 + g 77 -4.8 -4.93877 | opp_overlap 2664043, overlap 2664028 ATCGCATACGTATGG CGAC CGAAC GTCG TTTTCTTTAATACGA rbsA 2666108 - 2664618 - | ABC-type ribose transport system, ATPase component rbsD 2666526 - 2666122 - | ABC-type ribose transport system, auxiliary component rbsK 2667407 - 2666523 - | Ribokinase TERM 4198 2666949 - 2666927 - G 74 -9.9 -3.08032 | gap 1, opp_overlap 2666934, overlap 2666924 CTGGGTTTAAAATGA CGCG-AACGC CATG GCGTTTCGCG ATCGCCACCGCTTGT rbsR 2668393 - 2667404 - | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 4199 2668522 - 2668500 - R 100 -12.8 -5.04987 | opp_overlap 2668500 AATATTCGTAAAAAA CAGAGAGCCA CTA TGACTCTCTG TTTCTACAAATCTCG TERM 4200 2668500 - 2668522 + r 86 -10.6 -3.88787 | opp_overlap 2668500 AATATTCGTAAAAAA CAGAGAGCCA CTA TGACTCTCTG TTTCTACAAATCTCG gtaB 2669497 - 2668526 - | UTP-glucose-1-phosphate uridylyltransferase TERM 4201 2669521 - 2669503 - R 90 -5.2 -5.64274 | opp_overlap 2669503 2669506, overlap 2669505 2669506 CGATGTACAAAAAAA TAGCTCCC GTT GGGAGTCA GTTTGGTAGACGTGT TERM 4202 2669519 - 2669505 - R 70 -5.6 -4.46105 | opp_overlap 2669503 2669506, overlap 2669503 2669506 ATGTACAAAAAAATA GCTCCC GTT GGGAGT CAGTTTGGTAGACGT TERM 4203 2669518 - 2669506 - R 70 -9.1 -3.26036 | opp_overlap 2669503 2669506, overlap 2669505 2669503 TGTACAAAAAAATAG CTCCC GTT GGGAG TCAGTTTGGTAGACG Aflv_2675 2670136 - 2669519 - | Low complexity protein, contains internal repeats QQVlQQDVAQLQAG TERM 4204 2670453 - 2670431 - R 87 -6.3 -5.3104 | opp_overlap 2670431 CCACTAAAAAGAAAA CCGACAG CTCCAATTT CTGTCGG TTAATGAATAATTTC Aflv_2676 2671028 - 2670624 - | hypothetical protein TERM 4205 2671160 - 2671140 - R 100 -11.2 -5.85737 | opp_overlap 2671140 ATAGCAATAAAAAAA CGCAAGAG GAAAT CTCTTGCG TTTACTCGTCCGTAT TERM 4206 2671140 - 2671160 + r 91 -11.9 -3.80014 | opp_overlap 2671140 ATAGCAATAAAAAAA CGCAAGAGG AAA TCTCTTGCG TTTACTCGTCCGTAT Aflv_2677 2671392 - 2671162 - | hypothetical protein Aflv_2678 2671887 - 2671459 - | 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 4207 2671590 - 2671602 + g 78 -4.1 -5.08824 | overlap 2671582 ACCGTAATTGGTCAC CAGGT TTC ACTTG TTTTTTAAATCGGCA TERM 4208 2671910 - 2671932 + r 79 -3.3 -5.51402 | opp_overlap 2671912, overlap 2671911 2671912 CCTCCTTTATAAAAA AACGGAAGG ATCTC CCTTCCGCC TTTTTTTCAATGTAT TERM 4209 2671930 - 2671912 - R 100 -11 -5.60993 | opp_overlap 2671911 2671910 2671912 TCCTTTATAAAAAAA CGGAAGGA TCT CCCTTCCG CCTTTTTTTCAATGT TERM 4210 2671912 - 2671930 + r 75 -10.3 -2.92444 | opp_overlap 2671912, overlap 2671911 2671910 TCCTTTATAAAAAAA CGGAAGG ATCTC CCTTCCG CCTTTTTTTCAATGT Aflv_2679 2672183 - 2671971 - | hypothetical protein TERM 4211 2672022 - 2672034 + g 72 -7.7 -3.90588 | TGTCGCTGGCTTGAG CGCAT CCC ATGCG TTTCCTTCGCCAATC flhP 2673021 - 2672197 - | Flagellar hook-basal body protein TERM 4212 2672434 - 2672423 - G 75 -5.8 -4.67038 | TTTGGAAAAGCAAAA CGGT TGTC ACCG AGCGCCTGCATGAGT TERM 4213 2672678 - 2672665 - G 70 -5.9 -4.27316 | opp_overlap 2672665 CGGGCTAAGGTAAAA CGCAC CATC GCGCG TATATTGAATCGCCC TERM 4214 2672751 - 2672772 + g 71 -6.6 -4.15998 | gap 1, overlap 2672751 CGAGATCAAGCGGAC GGT-CGGTC TTTAC GACCGAACC TTGTTTCATTTGCAT flhO 2673820 - 2673032 - | Flagellar basal body rod protein TERM 4215 2673620 - 2673634 + g 100 -4.2 -6.02914 | overlap 2673621 GCCAATGTACGTCCG ATCACG CCA CGTGAG TTTTTTTTCTGTCGG TERM 4216 2673621 - 2673633 + g 76 -7.7 -4.20122 | overlap 2673620 CCAATGTACGTCCGA TCACG CCA CGTGA GTTTTTTTTCTGTCG Aflv_2682 2675158 - 2673983 - | Transposase TERM 4217 2675335 - 2675300 - R 87 -8.4 -4.61527 | overlap 2675305 AAAAGTGGGGAAAAA GCGAATAGGTACCATT TCCC AATGGTACCTATACAG GTTGACGATATGGAG TERM 4218 2675330 - 2675305 - R 95 -13.5 -3.45031 | overlap 2675300 TGGGGAAAAAGCGAA TAGGTACCATT TCCC AATGGTACCTA TACAGGTTGACGATA mbl 2676332 - 2675328 - | Actin-like ATPase involved in cell morphogenesis TERM 4219 2675535 - 2675548 + g 71 -3.1 -4.93696 | gap 1 TAGTTCTGGCGGTGT GCGCTC AAG GA-CGC TTTTTGCTGTTTGGA spoIIID 2676688 - 2676425 - | Stage III sporulation protein D (predicted transcriptional regulator of sigma-E/sigma-K-dependent genes) TERM 4220 2676603 - 2676624 + g 84 -6.5 -4.95155 | opp_overlap 2676602, overlap 2676604 TTGGACACACCGAAC TCTTTCGCG ATGA CGCGAACGG TTTTTCTCGTCTCCA TERM 4221 2676914 - 2676882 - R 100 -12.1 -5.26918 | opp_overlap 2676881 2676883 2676884 2676887, overlap 2676883 2676884 ATATTCCATAAAAAA GCGAACAGATGAGCA TTT TGCCCATCTGTTCAT GTTCTTGCCATTCCG TERM 4222 2676883 - 2676913 + r 85 -11.2 -3.42069 | opp_overlap 2676882 2676883 2676884, overlap 2676881 2676884 2676887 TATTCCATAAAAAAG CGAACAGATGAGCA TTT TGCCCATCTGTTCA TGTTCTTGCCATTCC TERM 4223 2676913 - 2676883 - R 100 -15.6 -3.75067 | opp_overlap 2676883 2676881 2676884 2676887, overlap 2676882 2676884 TATTCCATAAAAAAG CGAACAGATGAGCA TTT TGCCCATCTGTTCA TGTTCTTGCCATTCC TERM 4224 2676912 - 2676884 - R 100 -16.9 -2.84317 | opp_overlap 2676884 2676883 2676881 2676887, overlap 2676883 2676882 ATTCCATAAAAAAGC GAACAGATGAGCA TTT TGCCCATCTGTTC ATGTTCTTGCCATTC TERM 4225 2676884 - 2676912 + r 95 -14.7 -2.64759 | opp_overlap 2676883 2676882 2676884, overlap 2676883 2676881 2676887 ATTCCATAAAAAAGC GAACAGATGAGCA TTT TGCCCATCTGTTC ATGTTCTTGCCATTC TERM 4226 2676887 - 2676909 + r 82 -10.6 -3.46509 | opp_overlap 2676884 2676883 2676882, overlap 2676884 2676883 2676881 CCATAAAAAAGCGAA CAGATGAGCA TTT TGCCCATCTG TTCATGTTCTTGCCA spoIIQ 2677735 - 2676911 - | Stage II sporulation protein Q required for completion of engulfment TERM 4227 2677623 - 2677609 - G 79 -8.6 -4.10657 | GCACACCTGTTAAAA TAAGCG CCG CGCTTA ACAAATAAACGGAAG TERM 4228 2677788 - 2677759 - R 100 -10.1 -6.20267 | overlap 2677760 GTAAAAATAAAAAAA TTTGCCGCTTCAA AATT TTGAAGCGACAAG CGATATATCGTGAAT TERM 4229 2677787 - 2677760 - R 100 -13.6 -4.285 | overlap 2677759 TAAAAATAAAAAAAT TTGCCGCTTCAA AATT TTGAAGCGACAA GCGATATATCGTGAA spoIID 2678859 - 2677768 - | Stage II sporulation protein D required for complete dissolution of the asymmetric septum TERM 4230 2678553 - 2678575 + g 100 -4 -6.01187 | overlap 2678555 CGCCAACGACATATT GTTCAAGCGG AAG CCGTTCGACC TTTTTTTCTTTACTT TERM 4231 2678816 - 2678842 + g 80 -6.5 -4.7629 | opp_overlap 2678816 CATATATGCAAAAAA CGACCATCTGC TTTCT GCAAACGGTCG TTTTTACGTTCATCC TERM 4232 2678842 - 2678816 - G 100 -10.9 -5.14477 | opp_overlap 2678816 CATATATGCAAAAAA CGACCATCTGC TTTCT GCAAACGGTCG TTTTTACGTTCATCC murAA 2680171 - 2678852 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4233 2679036 - 2679022 - G 76 -7.8 -4.21812 | opp_overlap 2679030 GCCCAGCTAAAATAA GCGCAG CAG CTGCAC GTAAGTCCGTTGCGG TERM 4234 2679059 - 2679083 + g 74 -9.9 -3.21099 | overlap 2679079 CGTTGCGGCTACTTC CGCCCCTTGCA AGT TGCATGGGCCG TTAATAATGACCGAA Aflv_2688 2680949 - 2680182 - | hypothetical protein Aflv_2689 2681207 - 2680959 - | Uncharacterized small membrane protein TERM 4235 2681217 - 2681237 + r 88 -11.2 -3.45032 | opp_overlap 2681217 TTTCACAAAAGAAAA TGGAAGGG TAAAC CCCTTCCA TTATACGTCTTATTG TERM 4236 2681237 - 2681217 - R 100 -11.2 -5.18371 | opp_overlap 2681217 TTTCACAAAAGAAAA TGGAAGGG TAAAC CCCTTCCA TTATACGTCTTATTG nuoN 2682749 - 2681247 - | NADH dehydrogenase subunit N TERM 4237 2682019 - 2682005 - G 70 -5.7 -4.32046 | CGCTTAAAAACGAAA CAACG GGCGT CGTTG CACCTTGATATACAT nuoM 2684265 - 2682754 - | NADH dehydrogenase subunit M TERM 4238 2683741 - 2683755 + g 89 -3.5 -5.61881 | ACCGTTATAAATTAA GTAGC TGTAC GCTGC TTTTTCTTTTTCGAA TERM 4239 2684044 - 2684024 - G 74 -6.9 -4.36931 | TAAGCGACAGTAAAA TCCGTCTCT TTC AAAAACGGA AAATCACCAAATTGA nuoL 2686121 - 2684265 - | NADH dehydrogenase subunit L TERM 4240 2685348 - 2685372 + g 76 -10.7 -2.53382 | opp_overlap 2685347 2685345 2685348 AGCGACTAAATATAC CCCTGCAGCGA CCA TCGTTGCAGCG TGAATTAACGCTGAT nuoK 2686493 - 2686182 - | NADH dehydrogenase subunit K nuoJ 2686999 - 2686490 - | NADH dehydrogenase subunit J nuoI 2687415 - 2686996 - | NADH dehydrogenase subunit I TERM 4241 2687218 - 2687252 + g 74 -9.3 -3.35775 | gap 1, overlap 2687216 CGGATCCGGATGCTT TTTGCCCGTCAG-CTG AATA CAGTCGGTCGGGCAAA TGTTTGCGCACTGAT nuoH 2688439 - 2687438 - | NADH dehydrogenase subunit H TERM 4242 2688265 - 2688235 - G 79 -11.2 -3.06583 | ACAATAGTTTTAATA CGTCGGCGACTGTT TGT AACAATCCCCAACG TCCACCCACTTGATT nuoD 2689539 - 2688439 - | NADH dehydrogenase subunit D TERM 4243 2688481 - 2688502 + g 75 -7.4 -4.28651 | opp_overlap 2688483, overlap 2688473 ATCAATCGCGCCAAG TATCGCAA TTAAAT TTGCGATA TTTTCCCCTTTTAAT TERM 4244 2688615 - 2688659 + g 71 -9.2 -2.95111 | gap 1, opp_overlap 2688613 2688643, overlap 2688614 TATAACAACCAATTT CGCCACGCGGCGACTCG-ATG CGCA CATACGCCTCGCCCGGTGGCG CTTTAATCATTTTCG TERM 4245 2689489 - 2689477 - G 75 -9.1 -3.62572 | opp_overlap 2689460 CAGCACGAGGCGAAA CACGC CAT GCGTG CTCGGATGTTGCGGT nuoC 2690643 - 2689543 - | NADH dehydrogenase subunit C TERM 4246 2690093 - 2690106 + g 84 -3.7 -5.4505 | GCTGCTTTTGCTTTC GCTGC TGCC GCCGC TTTTTTCTTCGCCAA TERM 4247 2690189 - 2690202 + g 84 -3.7 -5.4833 | GCAGCTTTTGCTTTC GCTGC TGCC GCCGC TTTTTTCTTCGCTAA TERM 4248 2690285 - 2690298 + g 84 -3.7 -5.4505 | overlap 2690284 GCAGCTTTTGCTTTC GCCGC TGCC GCTGC TTTTTTCTTCGCCAA TERM 4249 2690381 - 2690394 + g 84 -3.7 -5.4833 | overlap 2690380 GCAGCTTTTGCTTTC GCCGC TGCC GCTGC TTTTTTCTTCGCTAA TERM 4250 2690477 - 2690490 + g 84 -3.7 -5.4505 | overlap 2690476 GCAGCTTTTGCTTTC GCCGC TGCC GCTGC TTTTTTCTTCGCAAG TERM 4251 2690669 - 2690684 + r 100 -7.6 -5.67283 | ACCTTCTTTCCTGTT TTCGCT TCAT AGCGAA TTTTTTCTTTCAGTT nuoB 2691180 - 2690647 - | NADH dehydrogenase subunit B TERM 4252 2690976 - 2690963 - GR 71 -2.4 -5.09895 | opp_overlap 2690972 GACGTACGGAAAAAA GATC CGAAGC GATC TAAATCGTAATGTGA nuoA 2691548 - 2691150 - | NADH dehydrogenase subunit A TERM 4253 2691447 - 2691427 - GR 74 -5.3 -4.71426 | TGTGGACGAAGAAAA CGCCCCGCT GTG AGCGCAACG ATTGGAAGTAAAATA TERM 4254 2691669 - 2691646 - R 100 -11.1 -5.63012 | AAAAATAAACAAAAA CCCTAAGAG ACAATG CTCTTAGGG TTAAAAGTTACGGTT atpC 2692074 - 2691670 - | F0F1-type ATP synthase, epsilon subunit atpD 2693520 - 2692099 - | F0F1-type ATP synthase, beta subunit TERM 4255 2693383 - 2693400 + g 71 -4.1 -4.8622 | overlap 2693386 GGCTACTTCTAACGT TAAGTCG ATAT CGACTTC TTTTTCGTTACGCGC TERM 4256 2693386 - 2693397 + g 73 -5.8 -4.53777 | overlap 2693383 TACTTCTAACGTTAA GTCG ATAT CGAC TTCTTTTTCGTTACG atpG 2694421 - 2693549 - | F0F1-type ATP synthase, gamma subunit TERM 4257 2694444 - 2694476 + r 71 -6.2 -4.25056 | opp_overlap 2694444 2694445, overlap 2694449 GCTCAATTGTTGAAA GGGGGGCGGAACAG CTTAA CTGTTCCGCTTACG TTTCTTACTCCGATA TERM 4258 2694449 - 2694471 + r 95 -13.5 -3.38832 | opp_overlap 2694445 2694444, overlap 2694444 ATTGTTGAAAGGGGG GCGGAACAG CTTAA CTGTTCCGC TTACGTTTCTTACTC atpA 2696004 - 2694481 - | F0F1-type ATP synthase, alpha subunit atpH 2696556 - 2696020 - | F0F1-type ATP synthase, delta subunit atpF 2697092 - 2696553 - | F0F1-type ATP synthase, subunit b atpE 2697442 - 2697230 - | F0F1-type ATP synthase, subunit c atpB 2698203 - 2697493 - | F0F1-type ATP synthase, subunit a atpI 2698587 - 2698210 - | Mg2+ transporter AtpI (F0F1-ATP synthase subunit AtpI) Aflv_2710 2698811 - 2698584 - | Uncharacterized small membrane protein TERM 4259 2698977 - 2698946 - R 90 -12.5 -3.57309 | opp_overlap 2698952, overlap 2698952 GAAAATTTTTGGAAA GAAAAAGGGATGC GTCATG ACATCCCTTTTTC GTGTTGAAATGGCGT TERM 4260 2698952 - 2698971 + r 77 -5 -4.87626 | gap 1, opp_overlap 2698946 2698952 TTTTGGAAAGAAAAA GGGATG-CG TCA TGACATCCC TTTTTCGTGTTGAAA TERM 4261 2698971 - 2698952 - R 85 -5.7 -5.27335 | opp_overlap 2698952, overlap 2698946 TTTTGGAAAGAAAAA GGGATGC GTCATG ACATCCC TTTTTCGTGTTGAAA Aflv_2711 2700162 - 2698960 - | UDP-N-acetylglucosamine 2-epimerase TERM 4262 2699542 - 2699567 + gr 87 -8.3 -4.4831 | gap 1, opp_overlap 2699541 2699542, overlap 2699539 AACTTTTTGTAAAAT CGGATGCGTGTA CGA TTCACGCA-CCG TTGTTTTTAATGCAT upp 2700754 - 2700125 - | Uracil phosphoribosyltransferase TERM 4263 2700830 - 2700853 + r 71 -5.2 -4.52415 | opp_overlap 2700825 2700830, overlap 2700825 TTCAACTGAAGAAAA GGTGCCCC TTTCGTTT GGGACACC TTTATTATTATACGT TERM 4264 2700853 - 2700830 - R 83 -7.4 -4.72029 | opp_overlap 2700825 2700830, overlap 2700825 TTCAACTGAAGAAAA GGTGCCCC TTTCGTTT GGGACACC TTTATTATTATACGT glyA 2702102 - 2700861 - | Glycine/serine hydroxymethyltransferase TERM 4265 2701985 - 2701998 + g 76 -6.7 -4.47328 | GCGCTTCCATCACCG CTTCG CTAA CGAAG TTTTCTGATGCAATT Aflv_2714 2702777 - 2702169 - | hypothetical protein rpiB 2703282 - 2702761 - | Ribose 5-phosphate isomerase tlpA 2704584 - 2703292 - | Methyl-accepting chemotaxis protein TERM 4266 2703411 - 2703428 + g 71 -6.9 -4.16016 | overlap 2703413 TCGCTGCTGTCACTT CTTCCGC CCCA GCGGATG TTTGTTCGGCAATGG TERM 4267 2703413 - 2703426 + g 70 -8.1 -3.67877 | overlap 2703411 GCTGCTGTCACTTCT TCCGC CCCA GCGGA TGTTTGTTCGGCAAT TERM 4268 2703889 - 2703901 + g 73 -5.5 -4.71382 | opp_overlap 2703872, overlap 2703872 2703867 TCGCACGACATGTAG CGACG CTT CGTTG TTTTTCGCTAATTGT TERM 4269 2704332 - 2704356 + g 83 -9.3 -3.9941 | opp_overlap 2704353, overlap 2704319 2704349 CTGCTGCTTTTAACG CCGCTTGTTCA AGT TGAGAAAGCGG TTTCGTTATAAAACG Aflv_2717 2705036 - 2704599 - | Protein phosphatase, low molecular weight phosphatase family TERM 4270 2705139 - 2705119 - R 100 -8.3 -6.04324 | GCAAAAAAGAAAAAA GAACTGGAA ACG TCCCAGCTC ATATAGGAAATAATA Aflv_2718 2705683 - 2705138 - | hypothetical protein TERM 4271 2705347 - 2705327 - G 71 -9 -3.28269 | overlap 2705322 AATCCCTAAACTTAA CCCGACAG AAAAA CTGTCGAG GCTAACGCTAAACGC TERM 4272 2705395 - 2705376 - G 85 -5.6 -5.12987 | GCAAATAAAAACAAA CCGATGCC AACA GGCCTCAG CCAACGTTCTTGTTC Aflv_2719 2706813 - 2705746 - | Putative translation factor (SUA5) TERM 4273 2706895 - 2706928 + r 79 -3.3 -5.52023 | gap 1, opp_overlap 2706901 2706902, overlap 2706898 2706902 2706904 TTCATACAAAATACT CAACAAT-TGTCCACA AAT TGTGGATATGTTGTTC TTTTTTGTTGATAAT TERM 4274 2706898 - 2706925 + r 74 -5 -4.82661 | gap 1, opp_overlap 2706901 2706902, overlap 2706895 2706902 2706904 ATACAAAATACTCAA CAAT-TGTCCACA AAT TGTGGATATGTTG TTCTTTTTTGTTGAT TERM 4275 2706902 - 2706920 + r 70 -8.2 -3.78069 | opp_overlap 2706902 2706901, overlap 2706898 2706895 2706904 AAAATACTCAACAAT TGTCCACA AAT TGTGGATA TGTTGTTCTTTTTTG TERM 4276 2706904 - 2706918 + r 70 -8.6 -3.42301 | opp_overlap 2706902 2706901, overlap 2706902 2706898 2706895 AATACTCAACAATTG TCCACA AAT TGTGGA TATGTTGTTCTTTTT spoIIR 2707588 - 2706956 - | Stage II sporulation protein R TERM 4277 2707690 - 2707669 - R 100 -10.2 -5.72118 | AAAAAATACAAAAAA GCTTCCGA TGTTAC TCGGAAGC GAGATCGGCGATGAC hemK 2708530 - 2707679 - | Methylase of polypeptide chain release factor TERM 4278 2708512 - 2708493 - G 75 -5.7 -4.61482 | opp_overlap 2708493 TCTCGGAAAAAAGAA GAAGCCC ATTGCA GGACTTC ATATATTTTACTGCT prfA 2709605 - 2708520 - | Protein chain release factor A TERM 4279 2709663 - 2709646 - R 93 -9.1 -5.23316 | opp_overlap 2709658, overlap 2709638 GATCATACGAAAAAA CTCGCCC TTAT GGACGAG TCGCCGTTTCTGTAC tdk 2710273 - 2709653 - | Thymidine kinase TERM 4280 2710321 - 2710311 - R 84 -8.2 -4.77165 | overlap 2710312 2710318 GCTTTCATAAGAAAA GCGC AAA GCGC CCGCGCCTATCGGCG TERM 4281 2710344 - 2710318 - R 73 -7.9 -3.80207 | gap 1, overlap 2710311 2710312 TAAGAAAAGCGCAAA GCGC-CCGCGCC TATC GGCGAAGAGCGC ACAAGCCCCAACGAG TERM 4282 2710371 - 2710386 + r 72 -9 -3.36878 | opp_overlap 2710364 CGAGGAGAGTTCGAA CCAAGC AGTC GCTTGG TTCTGCGTGGGTAAC TERM 4283 2710530 - 2710558 + r 77 -8.2 -4.26903 | opp_overlap 2710530 GTCTTACGAAAAAAA CAGGCAAGTCAA AAATG TTCGCTTGCCTG TTTTCATGACATACG TERM 4284 2710558 - 2710530 - R 95 -9 -5.52384 | gap 1, opp_overlap 2710530 GTCTTACGAAAAAAA CAGGCAAGTCAAA AATG TTCG-CTTGCCTG TTTTCATGACATACG rpmE 2710776 - 2710576 - | Ribosomal protein L31 rho 2712173 - 2710887 - | Transcriptional terminator Rho TERM 4285 2712342 - 2712309 - R 85 -6.7 -5.1485 | gap 1, opp_overlap 2712310 2712328 2712331, overlap 2712311 2712327 2712328 CAATCAATAGAAAAA GAGCGAGA-GCGCAAA AAG TTCGCGCATCTCGCGA TTATTTAATGACGAG TERM 4286 2712340 - 2712311 - R 100 -13.7 -4.18115 | gap 1, opp_overlap 2712310 2712328 2712331, overlap 2712309 2712327 2712328 ATCAATAGAAAAAGA GCGAGA-GCGCAAA AAG TTCGCGCATCTCGC GATTATTTAATGACG TERM 4287 2712328 - 2712342 + r 73 -7.1 -4.00042 | opp_overlap 2712311 2712309 2712327 2712328, overlap 2712310 2712331 GAGAGCGCAAAAAGT TCGCG CATCT CGCGA TTATTTAATGACGAG glpX 2713383 - 2712343 - | Fructose-1,6-bisphosphatase (Class II) TERM 4288 2713244 - 2713263 + gr 90 -11.4 -3.65812 | CGCCCCATCCAGCGC GCTGCAGC TAGT GCTGCGGC TTCTGTTACACGGAC murAB 2714648 - 2713332 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4289 2713510 - 2713496 - GR 73 -7.8 -3.82378 | opp_overlap 2713505 2713506 ATCCAGCCACAACAA GCGCAG CTC CTGCAC GCAAATCAGTTGCGC TERM 4290 2714535 - 2714550 + gr 72 -4.6 -4.66609 | opp_overlap 2714537, overlap 2714537 AATAGCGGCTGGAAT GAGCGC GACG GCGCTA TTTTTCGCTCCACTA TERM 4291 2714537 - 2714548 + gr 72 -7.2 -3.94812 | opp_overlap 2714537, overlap 2714535 TAGCGGCTGGAATGA GCGC GACG GCGC TATTTTTCGCTCCAC Aflv_2728 2715347 - 2714673 - | Transaldolase TERM 4292 2715191 - 2715218 + g 79 -8.6 -4.07687 | gap 1, opp_overlap 2715185 2715194 2715196 2715199, overlap 2715196 GAGAAGTAATTTCAC GAAGACG-ATCGT GGA ACGATACGTTTTC TTTTGCGACGAGGCT TERM 4293 2715196 - 2715213 + g 77 -4.9 -5.07652 | gap 1, opp_overlap 2715185 2715194 2715196 2715199, overlap 2715191 GTAATTTCACGAAGA CG-ATCGT GGA ACGATACG TTTTCTTTTGCGACG TERM 4294 2715365 - 2715398 + r 100 -17.5 -3.17194 | gap 1, opp_overlap 2715366 TGGGAATGAAACAAA ACCGC-CCGCTTCAGC AAG GCTGAAGCGGTGCGGC TTGCATTACAACGCT TERM 4295 2715397 - 2715366 - R 100 -21 -4.99947 | gap 1, opp_overlap 2715365 GGGAATGAAACAAAA CCGC-CCGCTTCAGC AAG GCTGAAGCGGTGCGG CTTGCATTACAACGC fbaA 2716291 - 2715404 - | Fructose-1,6-bisphosphate aldolase spoF 2716858 - 2716469 - | Sporulation regulator Spo0F (stand-alone reciever domain) Aflv_2731 2716984 - 2717520 + | hypothetical protein TERM 4296 2717515 - 2717550 + T 93 -10.6 -4.84359 | opp_overlap 2717518 2717523, overlap 2717518 2717523 ATTATCGCTGAGTAC GAATAAAAGGATGCCC ATTC GGACATCCTTTTATTA TTTTTGTAACGATGC TERM 4297 2717518 - 2717547 + T 100 -12.3 -4.52873 | opp_overlap 2717518 2717523, overlap 2717515 2717523 ATCGCTGAGTACGAA TAAAAGGATGCCC ATTC GGACATCCTTTTA TTATTTTTGTAACGA TERM 4298 2717547 - 2717518 - T 95 -14.5 -3.21218 | opp_overlap 2717518 2717515 2717523, overlap 2717523 ATCGCTGAGTACGAA TAAAAGGATGCCC ATTC GGACATCCTTTTA TTATTTTTGTAACGA TERM 4299 2717523 - 2717542 + T 91 -7.8 -5.18715 | opp_overlap 2717518 2717523, overlap 2717518 2717515 TGAGTACGAATAAAA GGATGCCC ATTC GGACATCC TTTTATTATTTTTGT TERM 4300 2717542 - 2717523 - T 93 -10 -4.73613 | opp_overlap 2717523 2717518 2717515, overlap 2717518 TGAGTACGAATAAAA GGATGCCC ATTC GGACATCC TTTTATTATTTTTGT pyrG 2719143 - 2717548 - | CTP synthase (UTP-ammonia lyase) TERM 4301 2719237 - 2719209 - R 100 -12.6 -5.61881 | gap 1 GGGGAAAAATAAAAA CGCTCCGCTTACA AATA TGTAAG-GGAGCG AACGTATCTCTATGA rpoE 2719899 - 2719300 - | DNA-directed RNA polymerase delta subunit TERM 4302 2719951 - 2719970 + r 70 -9.3 -3.1855 | opp_overlap 2719951 GTTGCCCAAAAAAAA TGTCGGG ACATCC CCCGACA TTACATATTACGGCG TERM 4303 2719970 - 2719951 - R 100 -10 -5.75342 | opp_overlap 2719951 GTTGCCCAAAAAAAA TGTCGGGA CATC CCCCGACA TTACATATTACGGCG Aflv_2734 2723234 - 2719971 - | Methylmalonyl-CoA mutase TERM 4304 2722195 - 2722225 + g 71 -3.2 -5.03314 | opp_overlap 2722193 2722196 2722202, overlap 2722196 2722197 2722199 TCAAATTTATTAATG ACGATAAGATCGGC ATA GTCGATCATATCAA TTTTTTCAAGCTGAG TERM 4305 2722197 - 2722223 + g 75 -10.2 -2.76422 | opp_overlap 2722193 2722196 2722202, overlap 2722196 2722195 2722199 AAATTTATTAATGAC GATAAGATCGGC ATA GTCGATCATATC AATTTTTTCAAGCTG TERM 4306 2722681 - 2722664 - G 71 -6.9 -4.08216 | opp_overlap 2722672 TCACTTGTTGCAAAA CCGCTTC CGTT GTAGCGG CAACTTCGCTATGAG Aflv_2735 2723870 - 2723244 - | Transcriptional regulator, TetR/AcrR family acdA 2725017 - 2723878 - | Acyl-CoA dehydrogenase mmgC 2726165 - 2725014 - | Acyl-CoA dehydrogenase TERM 4307 2726048 - 2726074 + g 72 -10.1 -2.78384 | opp_overlap 2726050 CCATTTTTTTAAGGA TAGGGCGCGGA AACTC TCCGCGCTCCA TATGCTCGACGAACG TERM 4308 2726072 - 2726050 - G 77 -11.2 -2.90194 | opp_overlap 2726048 ATTTTTTTAAGGATA GGGCGCGGAA ACT CTCCGCGCTC CATATGCTCGACGAA mmgB 2727039 - 2726179 - | 3-hydroxyacyl-CoA dehydrogenase mmgA 2728241 - 2727039 - | Acetyl-CoA acetyltransferase TERM 4309 2727107 - 2727119 + g 74 -6.2 -4.45945 | overlap 2727101 2727105 CTGCAATACCCGTGC CGCC ACCAC GGCG TTTTAATTCATGAAT TERM 4310 2728298 - 2728324 + r 70 -9.4 -2.62098 | opp_overlap 2728298 2728301, overlap 2728297 2728293 2728301 CAATGGACGGGCAAA GAAGGCGCACGA GAA TCGTACACCTTC CTATTGCTTTCATTA TERM 4311 2728324 - 2728298 - R 95 -13.8 -3.58269 | opp_overlap 2728298 2728297 2728293 2728301, overlap 2728301 CAATGGACGGGCAAA GAAGGCGCACGA GAA TCGTACACCTTC CTATTGCTTTCATTA TERM 4312 2728321 - 2728301 - R 83 -9.7 -3.92542 | opp_overlap 2728298 2728297 2728293 2728301, overlap 2728298 TGGACGGGCAAAGAA GGCGCACGA GAA TCGTACACC TTCCTATTGCTTTCA Aflv_2740 2730465 - 2728387 - | Fe-S oxidoreductase TERM 4313 2728976 - 2728993 + g 71 -3.3 -5.05301 | gap 1, opp_overlap 2728973, overlap 2728976 2728975 TCGTTTCCTAAACGG CGCG-GCG TAT CGCCCGAG TTTTTCTCCTTGTTT TERM 4314 2729885 - 2729875 - G 79 -3.2 -5.31456 | CCAAGCGACAAAAAA CAAC GCC GCTG CTCCTGTTTCGCCTA TERM 4315 2730728 - 2730712 - g 80 -2.9 -5.47218 | overlap 2730714 CCGCACGGAAAAAAA TCGGCGT CGA ACGACAA AGCGATATCACGCTA TERM 4316 2730987 - 2730958 - g 80 -4.9 -5.24129 | opp_overlap 2730958, overlap 2730959 2730960 CCCTTCGACAAAAAA GCGGGCAATTCGC CTTT GCGAATCGTCCAA CATTGCCGTTTTTTT TERM 4317 2730986 - 2730959 - g 73 -8.4 -3.73995 | opp_overlap 2730958, overlap 2730958 2730960 CCTTCGACAAAAAAG CGGGCAATTCGC CTTT GCGAATCGTCCA ACATTGCCGTTTTTT TERM 4318 2730985 - 2730960 - g 72 -9.7 -2.83915 | opp_overlap 2730958, overlap 2730959 2730958 CTTCGACAAAAAAGC GGGCAATTCGC CTTT GCGAATCGTCC AACATTGCCGTTTTT TERM 4319 2731270 - 2731258 - g 78 -9.1 -3.80855 | opp_overlap 2731257 2731258, overlap 2731254 CTCTTCAAAAAGGAA CGGTG AAA CACCG CTTTCTTCCGACAGA Aflv_2741 2730531 - 2731793 + | Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like enzyme TERM 4320 2731797 - 2731818 + T 100 -14.5 -3.95456 | opp_overlap 2731797 CCATTACTATAAAAA GCCCTTCTC GACC GAGAAGGGC TTTCGTATTACATTT TERM 4321 2731818 - 2731797 - T 100 -14.5 -4.93296 | opp_overlap 2731797 CCATTACTATAAAAA GCCCTTCTC GACC GAGAAGGGC TTTCGTATTACATTT argS 2733496 - 2731826 - | Arginyl-tRNA synthetase TERM 4322 2733329 - 2733309 - G 72 -9.7 -2.90075 | opp_overlap 2733320 TCTTCCGCAATCATA CGTGGCG CCTTTTT CGCCACG CGCGCTAACTGCATG Aflv_2743 2733930 - 2733493 - | hypothetical protein TERM 4323 2733535 - 2733519 - G 72 -7.3 -4.05788 | CCTCCTTAAACGAAA TCGTCAC CGC ATGACGA CCAACATGTTTCCCT Aflv_2744 2735252 - 2734035 - | Transposase Aflv_2745 2735851 - 2735249 - | Predicted site-specific integrase-resolvase TERM 4324 2736245 - 2736233 - H 100 -4.9 -5.72616 | ATGTATAGAAAAAAA CTTTA TAA TAAAG GAAAATGATGAAAAC Aflv_2746 2736277 - 2736735 + | hypothetical protein Aflv_2747 2736786 - 2737358 + | Glycopeptide antibiotics (teicoplanin) resistance membrane protein VanZ TERM 4325 2737798 - 2737788 - g 78 -5.4 -5.03145 | CAATTTGCCAAAAAA CGAA GCC TTCG TCACGGGCAACACAC TERM 4326 2737879 - 2737912 + G 71 -8.9 -3.39955 | CTGGGGGCATTCTCT CGTTTGGCTCATGGT TCAT ACGATGACCCAAGCG TTCCCTTTTGCCTTT Aflv_2748 2737454 - 2738635 + | Transposase, IS4 TERM 4327 2738726 - 2738697 - T 91 -13.9 -2.90571 | AATTGCTCAACTACA GTTCATTATTCAT CATC ATGAATAATGAAC AAAACTGTATAAACA TERM 4328 2738792 - 2738822 + T 80 -11.3 -2.88452 | opp_overlap 2738797, overlap 2738797 CATTCATTTTCTTCA AAAAATCCCTGTC GCGCA GACAGGGATTTTC GTCTTTATTTCACCC TERM 4329 2738797 - 2738817 + T 93 -11.2 -4.56802 | opp_overlap 2738797, overlap 2738792 ATTTTCTTCAAAAAA TCCCTGTC GCGCA GACAGGGA TTTTCGTCTTTATTT TERM 4330 2738817 - 2738797 - T 95 -11.2 -5.00884 | opp_overlap 2738797 2738792 ATTTTCTTCAAAAAA TCCCTGTC GCGCA GACAGGGA TTTTCGTCTTTATTT speB 2739699 - 2738827 - | Agmatinase speE 2740602 - 2739712 - | Spermidine synthase TERM 4331 2741781 - 2741766 - g 78 -4 -5.1861 | gap 1 GTGACTATGAAAAAA GCCC-AT TTA ATCGGGC GACACAAGCAGAACG Aflv_2751 2740706 - 2742766 + | Membrane carboxypeptidase (penicillin-binding protein) TERM 4332 2742803 - 2742768 - T 100 -20.7 -3.53811 | opp_overlap 2742774 2742790, overlap 2742774 TTGATTGGTTTTAAA CATAAACGCCCAAGC GAGTAT GCTTGGGCGTTTATG CGTCCTAGTTTTATC TERM 4333 2742774 - 2742797 + T 100 -14.6 -3.93963 | opp_overlap 2742768 2742774, overlap 2742790 GGTTTTAAACATAAA CGCCCAAGCG AGTA TGCTTGGGCG TTTATGCGTCCTAGT TERM 4334 2742797 - 2742774 - T 100 -13.9 -4.32857 | opp_overlap 2742774 2742790, overlap 2742768 GGTTTTAAACATAAA CGCCCAAGC GAGTAT GCTTGGGCG TTTATGCGTCCTAGT Aflv_2752 2743411 - 2742905 - | hypothetical protein Aflv_2753 2744115 - 2743429 - | Zn-dependent protease Aflv_2754 2744129 - 2744416 + | Probable 4-oxalocrotonate tautomerase TERM 4335 2744412 - 2744431 + T 93 -10 -4.98522 | opp_overlap 2744412 GATTAAGCGACGAAA GCTGACCT GTGG GGGTCAGC TTTTTATGTACGCTT TERM 4336 2744431 - 2744412 - T 79 -9.3 -3.80114 | opp_overlap 2744412 GATTAAGCGACGAAA GCTGACC TGTGGG GGTCAGC TTTTTATGTACGCTT Aflv_2755 2744948 - 2744427 - | hypothetical protein Aflv_2756 2746274 - 2744952 - | HD superfamily phosphohydrolase TERM 4337 2745495 - 2745511 + g 82 -8.1 -4.42238 | opp_overlap 2745494 2745495 AGCTAAATATAAATG TTTTGCA CGG TGCAAAA TTTTCGTTAAAATGA TERM 4338 2746346 - 2746367 + rH 95 -2.9 -6.12458 | opp_overlap 2746346 AAATAAAGAAAAAAA TCACCTTCG AACA CAAAGGCGA TTTTTTATTTTTTTA TERM 4339 2746367 - 2746346 - RH 100 -7.3 -6.11392 | opp_overlap 2746346 AAATAAAGAAAAAAA TCACCTTCG AACA CAAAGGCGA TTTTTTATTTTTTTA Aflv_2757 2746743 - 2746372 - | Uncharacterized conserved protein, CXXXC motif TERM 4340 2746890 - 2746870 - gR 85 -8.9 -4.14397 | AGGTGATAAATTAAA CCGCACGTC AGC GGCATGCGG GTTCCGCTGGAATGC rsfA 2746724 - 2747413 + | Prespore-specific transcriptional regulator rsfA TERM 4341 2747451 - 2747403 - TR 78 -4.1 -5.32608 | gap 1, opp_overlap 2747418 2747446, overlap 2747418 AAAAAATTGAAAAAA TTGCTGA-GTAAAAAAGCTGTC ACATCG GACAGCTTTTTTATGTCGGTAA CATCGTCTCGTTTCG TERM 4342 2747418 - 2747435 + Tr 93 -7 -5.38047 | opp_overlap 2747403 2747418 TTGCTGAGTAAAAAA GCTGTC ACATCG GACAGC TTTTTTATGTCGGTA TERM 4343 2747435 - 2747418 - TR 85 -7 -5.14563 | opp_overlap 2747418, overlap 2747403 TTGCTGAGTAAAAAA GCTGTC ACATCG GACAGC TTTTTTATGTCGGTA Aflv_2759 2748333 - 2747440 - | Lipoate-protein ligase A pta 2749247 - 2748264 - | Phosphotransacetylase TERM 4344 2749381 - 2749404 + H 85 -9 -4.16284 | opp_overlap 2749385 TTTTAAACGGAGTGA TATATCGCCT AAAA AGGTGATATA TTTGTTAAAGAATAT TERM 4345 2749679 - 2749666 - g 78 -2.3 -5.45726 | opp_overlap 2749667, overlap 2749667 TACATTGGAAAAAAA TTCGG CAGA CCGAT TTTACGATATTTTAT TERM 4346 2749857 - 2749869 + G 71 -4.7 -4.66163 | overlap 2749858 TTGGTCGTTTATCGG TCGCG GGG CGCGC TTTTTCGCTGAAGGT Aflv_2761 2749444 - 2750007 + | Membrane protein DegA family TERM 4347 2750499 - 2750487 - g 77 -6.3 -4.7373 | opp_overlap 2750487 2750486 CGATCTTACCAAAAA CAAAC CAC GTTTG CTTTTATCCGATGGA TERM 4348 2750665 - 2750677 + G 71 -6.9 -4.09243 | TGACGACTATGAATG GGGCG TCA CGCTC TTTTCGAACGATGTA Aflv_2762 2750066 - 2750821 + | Predicted heme peroxidase involved in anaerobic stress response TERM 4349 2750821 - 2750839 + F 100 -8.8 -5.92337 | GTTTTTACATGTGTA GGCCTCCG ATT TGGAGGTC TTTTTTTTCATCTCT cwlJ 2750943 - 2751365 + | Cell wall hydrolyse involved in spore germination gerQ 2751380 - 2751823 + | Spore coat protein gerQ TERM 4350 2751821 - 2751854 + T 100 -13.4 -4.77173 | gap 1, opp_overlap 2751827 ACATATGCTCCACGA TG-AAAACGAGGCGT CAAGC ACGCCTCGTTTTACA TTTGTTTTATCGCGA TERM 4351 2751847 - 2751827 - T 100 -12.6 -4.30576 | opp_overlap 2751821 GCTCCACGATGAAAA CGAGGCGT CAAGC ACGCCTCG TTTTACATTTGTTTT Aflv_2765 2752212 - 2751850 - | Uncharacterized small membrane protein Aflv_2766 2752460 - 2752224 - | hypothetical protein malL 2752559 - 2754175 + | Oligo-1,4-1,6-alpha-glucosidase (sucrase-maltase-isomaltase) TERM 4352 2754195 - 2754173 - T 86 -12.1 -3.42699 | opp_overlap 2754173, overlap 2754176 ATGTATGCATTACAA TAAGCAGCC GATGT GGCTGCTTA TTTTTTATTGACTTC TERM 4353 2754173 - 2754195 + T 100 -12.8 -5.5074 | opp_overlap 2754173 2754176 ATGTATGCATTACAA TAAGCAGCCG ATG TGGCTGCTTA TTTTTTATTGACTTC TERM 4354 2754192 - 2754176 - T 83 -9.4 -3.8512 | opp_overlap 2754173, overlap 2754173 TATGCATTACAATAA GCAGCC GATGT GGCTGC TTATTTTTTATTGAC Aflv_2768 2755149 - 2754193 - | K+ transport system, NAD-binding component Aflv_2769 2755391 - 2755185 - | Uncharacterized protein contains CXXC motif ung 2756043 - 2755366 - | Uracil DNA glycosylase TERM 4355 2756063 - 2756091 + r 82 -6 -4.86621 | opp_overlap 2756065, overlap 2756065 CTCCTTTCTAATGCA AAGGCTACCCTA CTTTA TAGGATAGCCTG TTTTTGCTTAAAACT TERM 4356 2756089 - 2756065 - R 88 -11.5 -3.75153 | opp_overlap 2756063 2756065 CCTTTCTAATGCAAA GGCTACCCTAC TTT ATAGGATAGCC TGTTTTTGCTTAAAA TERM 4357 2756065 - 2756089 + r 79 -8.6 -4.05402 | opp_overlap 2756065, overlap 2756063 CCTTTCTAATGCAAA GGCTACCCTA CTTTA TAGGATAGCC TGTTTTTGCTTAAAA Aflv_2771 2757481 - 2756099 - | Glycyl-tRNA synthetase (class II) TERM 4358 2757447 - 2757430 - G 78 -5.6 -4.81083 | overlap 2757436 CTGAACCAGGAAAAA CAAAGC CACGAT GCTTTG CATGTGCTACAATTT TERM 4359 2757555 - 2757517 - R 100 -19.7 -5.7827 | overlap 2757553 AATATAAACAAAAAA CGCTCTCATCCTTAGGC CTTTC GCCTAGGGACGAGAGCG TGACTCCCGCGGTTC TERM 4360 2757578 - 2757598 + r 89 -9.7 -4.18018 | CGCGGTTCCACCCTA GTTGATGCG TAA CGCATCCAC TTTTGCGTAAAGCAA ahpF 2759310 - 2757781 - | Alkyl hydroperoxide reductase large subunit ahpC 2759887 - 2759324 - | Alkyl hydroperoxide reductase small subunit TERM 4361 2759987 - 2759973 - R 76 -4.4 -5.04082 | opp_overlap 2759973, overlap 2759965 GAAACAATAATAAAA TTATAA CAA TTATAA TTCGATATAAATTAT TERM 4362 2760118 - 2760097 - R 100 -7.3 -5.84381 | gap 1, opp_overlap 2760097 2760105, overlap 2760089 TCACTAATAAAAAAA CAGAGCCTGC ACA GC-GACTCTG CTTTCTCACGTTATA Aflv_2774 2760357 - 2760124 - | Uncharacterized small membrane protein TERM 4363 2760352 - 2760334 - G 73 -6 -4.53966 | AAATAAAACAAATAA TTGCTGGA TGC TCCACCAA TACATCCCGCTCCCT Aflv_2775 2761331 - 2760369 - | Glycosyltransferase involved in cell wall biogenesis TERM 4364 2761248 - 2761192 - GR 78 -4 -5.08255 | gap 1, opp_overlap 2761207 2761210, overlap 2761207 ACGCCCAAAAGAAAA TCCCCTTTCAAAAAAGAAGCTACAATG ATAC CATTATAGCTTC-TTTTCGAATGATTA TGCGAGTTCTTGTTG TERM 4365 2761207 - 2761234 + gr 89 -10 -4.17425 | opp_overlap 2761192 2761207, overlap 2761210 TCCCCTTTCAAAAAA GAAGCTACAATG ATAC CATTATAGCTTC TTTTCGAATGATTAT TERM 4366 2761234 - 2761207 - GR 100 -12.2 -5.00616 | opp_overlap 2761207 2761210, overlap 2761192 TCCCCTTTCAAAAAA GAAGCTACAATG ATAC CATTATAGCTTC TTTTCGAATGATTAT Aflv_2776 2762442 - 2761246 - | Permease of the major facilitator superfamily TERM 4367 2761865 - 2761878 + gr 71 -3.9 -4.89852 | GAACGACGCTCCACT TTTGT TGCC ACAAA TTTTTGTGAATCTGG Aflv_2777 2763809 - 2762604 - | Transposase TERM 4368 2763970 - 2763951 - R 93 -10.7 -4.7629 | opp_overlap 2763942 GTATCAATGCAAAAA GCGTCGG GAAAAA CCGACGC TTAGCGCAAATCTTC cdd 2764366 - 2763971 - | Cytidine/deoxycytidine deaminase Aflv_2779 2764562 - 2764392 - | Uncharacterized small membrane protein dra 2765246 - 2764578 - | Deoxyribose-phosphate aldolase Aflv_2781 2766602 - 2765298 - | Nucleoside permease deoR 2767628 - 2766687 - | Transcriptional regulator of deoxyribonucleoside metabolism sacA 2769190 - 2767742 - | Sucrose-6-phosphate hydrolase TERM 4369 2768847 - 2768836 - G 78 -4.4 -5.24129 | TCCCCGTATAAAAAA GTGT GAGC ACAC CATCATTGTCCACAG sacK 2770143 - 2769178 - | Fructokinase (ribokinase family) TERM 4370 2769669 - 2769679 + g 76 -6.8 -4.43477 | opp_overlap 2769669 TCGGATCATATGAAA CGGT CAT ACCG TTTTCCTTAGCTAGC TERM 4371 2770160 - 2770178 + r 77 -8.1 -4.16033 | opp_overlap 2770160 CCTCCTACACAAAAA GGCGAGT TATTC GCTCGCC TTATTCTTCTTTAAA TERM 4372 2770178 - 2770160 - R 85 -7.4 -4.96848 | opp_overlap 2770160 CCTCCTACACAAAAA GGCGAG TTATTCG CTCGCC TTATTCTTCTTTAAA sacP 2771549 - 2770179 - | Phosphotransferase system (PTS) sucrose-specific enzyme IIBC component TERM 4373 2770816 - 2770840 + g 73 -2.8 -5.1615 | ACAAGTAAGTCGACT GCATGTGGAA CGACT TTTCGCAAGC TTTTTTCGATCTTAC TERM 4374 2771641 - 2771591 - R 100 -8.7 -5.8096 | opp_overlap 2771591 GATAAAAAACAAAAA GACCTAAAATGTACATACGA-ATCC CTT AAACATCGT-CGTACATTTTAGGTC TTGCCTGCTTATGCA sacT 2772569 - 2771739 - | Transcriptional antiterminator of sucrose metabolism crr 2773091 - 2772609 - | Phosphotransferase system (PTS) sucrose-specific enzyme II A component TERM 4375 2773137 - 2773181 + H 100 -18.9 -3.05384 | opp_overlap 2773137, overlap 2773139 2773146 GGATAAAAAATAAAA GACCTAAAACGCAAGAAAGAA ACC TTCTTTCATCCGTTTTAGGTC TTGCCTGCAACGCAG TERM 4376 2773181 - 2773137 - H 100 -18.9 -5.49579 | opp_overlap 2773137 2773139 2773146 GGATAAAAAATAAAA GACCTAAAACGCAAGAAAGAA ACC TTCTTTCATCCGTTTTAGGTC TTGCCTGCAACGCAG TERM 4377 2773139 - 2773179 + H 100 -15.7 -3.08679 | opp_overlap 2773137, overlap 2773137 2773146 ATAAAAAATAAAAGA CCTAAAACGCAAGAAAGAA ACC TTCTTTCATCCGTTTTAGG TCTTGCCTGCAACGC TERM 4378 2773146 - 2773172 + H 73 -6.6 -4.28656 | opp_overlap 2773137, overlap 2773139 2773137 ATAAAAGACCTAAAA CGCAAGAAAGAA ACC TTCTTTCATCCG TTTTAGGTCTTGCCT yukF 2773297 - 2774529 + | DNA-binding transcriptional regulator (contains C-terminal Fis domain) TERM 4379 2774525 - 2774555 + F 100 -12.1 -5.7827 | gap 1, opp_overlap 2774529, overlap 2774529 ACAAATATCGGGCAA CATAGCTTTTGTGG AAAT CCACAAAAGCT-TG TTTTTTCTTTCTCTT TERM 4380 2774529 - 2774552 + F 100 -14 -4.9072 | opp_overlap 2774529, overlap 2774525 ATATCGGGCAACATA GCTTTTGTGG AAAT CCACAAAAGC TTGTTTTTTCTTTCT TERM 4381 2774552 - 2774529 - f 93 -14 -3.07522 | opp_overlap 2774525 2774529 ATATCGGGCAACATA GCTTTTGTGG AAAT CCACAAAAGC TTGTTTTTTCTTTCT TERM 4382 2774701 - 2774691 - g 79 -6.8 -4.70739 | overlap 2774693 TAAAAATAACGAAAA TCGC GTA GCGA TTACACCAGCTGGCG ald 2774650 - 2775780 + | L-alanine dehydrogenase TERM 4383 2775811 - 2775789 - T 83 -9.1 -4.05181 | opp_overlap 2775789 AGCATAAAGACGAAA GGTGTCCTG ACAAA CGGGACACC TTTTTCTCATAACAC TERM 4384 2775789 - 2775811 + T 95 -11.3 -4.91109 | opp_overlap 2775789 AGCATAAAGACGAAA GGTGTCCTG ACAAA CGGGACACC TTTTTCTCATAACAC glnQ 2776540 - 2775818 - | ABC-type glutamine transport system, ATPase component Aflv_2791 2777193 - 2776537 - | ABC-type glutamine transport system, permease component TERM 4385 2777218 - 2777243 + r 100 -14.9 -4.73388 | opp_overlap 2777218 TTCTTCTTGTAAAAA TTGCGTAACTG TCTA CAGTTACGCAA TTTTTCGTCGACGTT TERM 4386 2777243 - 2777218 - R 100 -14.9 -4.56597 | opp_overlap 2777218 TTCTTCTTGTAAAAA TTGCGTAACTG TCTA CAGTTACGCAA TTTTTCGTCGACGTT Aflv_2792 2778054 - 2777257 - | ABC-type glutamine transport system, periplasmic-binding component TERM 4387 2777581 - 2777591 + g 70 -2.6 -5.01732 | AATATTTGGATTCTC TTTT CCT AAAA TTTTTTCAACGGCTT TERM 4388 2777940 - 2777975 + g 80 -2.5 -5.47159 | overlap 2777942 GGGCAAACGACGCAT CTGTGACAACCGTAA TTTTCT TTTCTGTTGTCGCTG TTTTTTCTGTTGAAC Aflv_2793 2778328 - 2780586 + | Pyruvate-formate lyase TERM 4389 2780617 - 2780587 - f 95 -14 -3.3458 | opp_overlap 2780592, overlap 2780582 2780592 CATGAAACAATGTAA CGGAAGCTCCCACG ATG CGTGGGAGCTTTCT ACCTAGGAGGAAAAC TERM 4390 2780592 - 2780612 + F 100 -16.9 -3.91897 | opp_overlap 2780592 2780587 2780582 AACAATGTAACGGAA GCTCCCACG ATG CGTGGGAGC TTTCTACCTAGGAGG TERM 4391 2780612 - 2780592 - f 100 -16.9 -3.22106 | opp_overlap 2780592, overlap 2780587 2780582 AACAATGTAACGGAA GCTCCCACG ATG CGTGGGAGC TTTCTACCTAGGAGG TERM 4392 2780862 - 2780873 + G 73 -7.2 -4.1196 | opp_overlap 2780853, overlap 2780853 2780871 GAATAACGGTGAGCA GCGG CGAA CCGC TTTTACAAATCGATT Aflv_2794 2780636 - 2781364 + | Pyruvate-formate lyase-activating enzyme TERM 4393 2781384 - 2781365 - T 85 -9.3 -4.18506 | opp_overlap 2781363 2781365 TTAGGCGCAAAATAA GCTGGTC GTCATT GACCAGC TCTTTGCATAAACCG TERM 4394 2781365 - 2781384 + T 77 -10 -3.40597 | opp_overlap 2781365, overlap 2781363 TTAGGCGCAAAATAA GCTGGTCG TCAT TGACCAGC TCTTTGCATAAACCG pgcM 2782038 - 2781373 - | Phosphatase/phosphohexomutase HAD superfamily Aflv_2796 2782747 - 2782031 - | rRNA methylase Aflv_2797 2783286 - 2782753 - | hypothetical protein Aflv_2798 2783903 - 2783298 - | hypothetical protein Aflv_2799 2784532 - 2783900 - | ABC-type multidrug transport system, ATPase component TERM 4395 2784422 - 2784441 + g 73 -3.6 -4.99435 | CTTCCCAGAGCCATT TTTACCGA ACAA TCCGTAAA TTTTTCCTTCTTCAA Aflv_2800 2785111 - 2784542 - | Membrane protein, cytochrome b related Aflv_2801 2786001 - 2785258 - | Membrane protein Aflv_2802 2786749 - 2785970 - | Membrane protein TERM 4396 2786811 - 2786782 - R 100 -18.1 -3.53531 | opp_overlap 2786787 2786789 CTATGAAGAGGAGAA CCGAAGATGATCA TAAA TGATCATCTTCGG TAACAAATATTCAAT TERM 4397 2786787 - 2786806 + r 72 -9.4 -3.05935 | opp_overlap 2786782, overlap 2786789 AAGAGGAGAACCGAA GATGATCA TAAA TGATCATC TTCGGTAACAAATAT yybN 2787256 - 2786831 - | hypothetical protein TERM 4398 2787370 - 2787333 - H 80 -11.5 -2.79796 | opp_overlap 2787333 2787335 2787336 TTCCATCCTATCATA TCCGTATTTTCCGCAAT TTTC ATTGCGGAAAATACCTA TTTTTCAAAAAACAA TERM 4399 2787333 - 2787370 + H 93 -11.5 -4.56597 | opp_overlap 2787333, overlap 2787335 2787336 TTCCATCCTATCATA TCCGTATTTTCCGCAAT TTTC ATTGCGGAAAATACCTA TTTTTCAAAAAACAA TERM 4400 2787335 - 2787368 + H 100 -14.1 -3.90048 | opp_overlap 2787333, overlap 2787333 2787336 CCATCCTATCATATC CGTATTTTCCGCAAT TTTC ATTGCGGAAAATACC TATTTTTCAAAAAAC TERM 4401 2787336 - 2787367 + H 100 -17.6 -2.93708 | opp_overlap 2787333, overlap 2787335 2787333 CATCCTATCATATCC GTATTTTCCGCAAT TTTC ATTGCGGAAAATAC CTATTTTTCAAAAAA Aflv_2804 2787416 - 2787613 + | hypothetical protein Aflv_2805 2787604 - 2788542 + | Heptaprenyl diphosphate synthase related protein Aflv_2807 2790282 - 2788642 - | Transposase Aflv_2806 2788547 - 2788756 + | hypothetical protein TERM 4402 2788740 - 2788783 + gF 100 -16.4 -2.57358 | opp_overlap 2788748, overlap 2788743 2788748 AACGATTCAGACTGT TGACAAAATGGTTGTAAGAC AGTT GTCTTACAACCATTTTATTA CATTTTGATATTTGT TERM 4403 2788743 - 2788780 + gF 100 -15.9 -3.41195 | opp_overlap 2788748, overlap 2788740 2788748 GATTCAGACTGTTGA CAAAATGGTTGTAAGAC AGTT GTCTTACAACCATTTTA TTACATTTTGATATT TERM 4404 2788748 - 2788775 + gF 100 -15.8 -4.77719 | opp_overlap 2788748, overlap 2788743 2788740 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTCTTACAACCA TTTTATTACATTTTG TERM 4405 2788775 - 2788748 - Gf 100 -15.8 -4.38154 | opp_overlap 2788743 2788740 2788748 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTCTTACAACCA TTTTATTACATTTTG TERM 4406 2790238 - 2790274 + gF 71 -8.7 -3.30903 | opp_overlap 2790243 2790266, overlap 2790241 2790272 CTTATACCTATATAT TAAAACAGCTTGTCGAC TTT GTCGACAAGCTGCATCG TTGTGCAACGATTTT TERM 4407 2790241 - 2790271 + gF 89 -12.6 -2.82742 | opp_overlap 2790243 2790266, overlap 2790238 ATACCTATATATTAA AACAGCTTGTCGAC TTT GTCGACAAGCTGCA TCGTTGTGCAACGAT TERM 4408 2790269 - 2790243 - Gf 100 -19.6 -4.39568 | opp_overlap 2790241 2790238, overlap 2790266 ACCTATATATTAAAA CAGCTTGTCGAC TTT GTCGACAAGCTG CATCGTTGTGCAACG TERM 4409 2790272 - 2790285 + GgF 100 -5.3 -5.83211 | opp_overlap 2790266, overlap 2790238 TGTCGACAAGCTGCA TCGTT GTGC AACGA TTTTTTATTTTAATG Aflv_2808 2790247 - 2791683 + | Signal transduction histidine kinase degU 2791640 - 2792260 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 4410 2792307 - 2792269 - T 93 -11.2 -4.35926 | opp_overlap 2792271 2792277, overlap 2792271 2792277 ACCTTAAATGTAAAA CATAAAAAGCATGGGCAA GCA TTTCCCATGCTTTTCATT TGATCTGCTGTAGCG TERM 4411 2792305 - 2792271 - T 95 -13.8 -3.78026 | opp_overlap 2792271 2792277, overlap 2792269 2792277 CTTAAATGTAAAACA TAAAAAGCATGGGCAA GCA TTTCCCATGCTTTTCA TTTGATCTGCTGTAG TERM 4412 2792271 - 2792305 + T 90 -11.6 -3.8766 | opp_overlap 2792271 2792269 2792277, overlap 2792277 CTTAAATGTAAAACA TAAAAAGCATGGGCAA GCA TTTCCCATGCTTTTCA TTTGATCTGCTGTAG TERM 4413 2792299 - 2792277 - T 100 -10.6 -5.28983 | opp_overlap 2792271 2792277, overlap 2792271 2792269 TGTAAAACATAAAAA GCATGGGCAA GCA TTTCCCATGC TTTTCATTTGATCTG TERM 4414 2792277 - 2792299 + T 91 -10.6 -4.6038 | opp_overlap 2792277 2792271 2792269, overlap 2792271 TGTAAAACATAAAAA GCATGGGCAA GCA TTTCCCATGC TTTTCATTTGATCTG Aflv_2810 2793013 - 2792303 - | ABC-type multidrug transport system, ATPase component Aflv_2811 2794419 - 2792956 - | Membrane protein, predicted permease TERM 4415 2793943 - 2793933 - GR 71 -4 -4.82518 | overlap 2793924 AAAAGAGCAATAAAA TTTG CCA CAAA AACGCGACGAACGGA Aflv_2812 2795176 - 2794403 - | Membrane protein, predicted permease TERM 4416 2794495 - 2794478 - G 76 -2.7 -5.29445 | gap 1, overlap 2794480 CGTTAATAAGAAAAA TGGAACGA GCA CCGT-CCA CATCGGTTGTTGAAA TERM 4417 2795228 - 2795207 - R 83 -10.9 -3.64703 | opp_overlap 2795207 TCTCTTCGATGGAAA GCAGGGAAA CGAT CTTCCCTGC TTTTAGTTGCTGCGC TERM 4418 2795207 - 2795228 + r 90 -10.2 -4.45544 | opp_overlap 2795207 TCTCTTCGATGGAAA GCAGGGAA ACGATC TTCCCTGC TTTTAGTTGCTGCGC Aflv_2813 2795608 - 2795231 - | hypothetical protein TERM 4419 2795775 - 2795747 - R 100 -12.5 -4.87807 | overlap 2795766 TCAAGATATGAAAAA GGAGCGTTCCA AAAGTAA CGGAACGCTCC CCCCTGTTATTCATA Aflv_2814 2798453 - 2795811 - | NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain TERM 4420 2796282 - 2796292 + g 71 -3.2 -5.06451 | ACCAGCGATCGTTGA TGCG TTA TGCA TTTTTTCACGTGCTA TERM 4421 2797240 - 2797257 + g 78 -7.1 -4.431 | opp_overlap 2797239, overlap 2797236 ATTCGCTTACCGAAT TCAAGAA TGAC TTCTTGA TTTTCTGAATGAATG TERM 4422 2798437 - 2798456 + g 72 -9.4 -3.14931 | CCTCCTAATATTGTT CTTGTGAA AATA TTCACAAG TTAGTCGAAAATAAA TERM 4423 2798489 - 2798474 - R 79 -3.3 -5.46706 | opp_overlap 2798474 AGTCGAAAATAAAAA TGTGA TTGTTT TCACA TTATCATTATAACGA Aflv_2815 2798817 - 2798590 - | hypothetical protein Aflv_2816 2800200 - 2798908 - | hypothetical protein TERM 4424 2799240 - 2799250 + g 79 -3.2 -5.38054 | TGTCGTCTTTATTTA CGGA GCT TTCG TTTTTATTTATGGAG Aflv_2817 2800341 - 2801855 + | Amino acid oxidase (deaminating) TERM 4425 2802691 - 2802704 + G 71 -6.7 -4.15543 | overlap 2802682 TCGTTGGATGATTGC GTCGT TTTT ACGAC TTTTGCGACTGTTTG gerSA 2801852 - 2803321 + | Spore germination protein SA TERM 4426 2803900 - 2803911 + GF 75 -2.2 -5.2696 | TCAAGCGGTAAAAAC GACG GTTT TGTC TTTTTTAGGTTTTGA TERM 4427 2804245 - 2804234 - gf 86 -4.4 -5.40072 | opp_overlap 2804234 CTTCTCGGAAAAAAA GATC ATAC GATC GTATTATTTATTGCC Aflv_2819 2803322 - 2804431 + | Spore germination protein; amino acid permease TERM 4428 2804861 - 2804845 - gf 70 -8.1 -3.61654 | opp_overlap 2804838 2804837 2804847 TACATTCACCTGAAA GATAAAC CAC GTTTATC TGTCGCGATTCGTGA Aflv_2820 2804329 - 2805522 + | Spore germination protein SC TERM 4429 2805651 - 2805695 + F 76 -6.6 -4.43859 | CAATACGATGATGAT TTTCCTGTGCTTGATG ATGTTAGTTTTGA CATCGAGCGCGGGAAA TTTTATACGCTTCTC TERM 4430 2805929 - 2805919 - g 82 -3.2 -5.53991 | TACGTATTAAAAAAA TACC GGA GGCA GACATTGAACGAAAA msmX 2805657 - 2806649 + | Spermidine/putrescine transport system ATP-binding protein Aflv_2822 2806636 - 2807448 + | Spermidine/putrescine transport system permease protein Aflv_2823 2807430 - 2808224 + | Spermidine/putrescine transport system permease protein TERM 4431 2808910 - 2808888 - g 77 -6.4 -4.6038 | GAGACGAAATTAAAA TGCTTCTT GCGAACG AAGAAGCA GCGATCGGTATCGTT Aflv_2824 2808221 - 2809294 + | Spermidine/putrescine transport system substrate-binding protein TERM 4432 2809296 - 2809318 + F 86 -9.9 -3.96534 | opp_overlap 2809285 2809295 2809292 2809296 2809298, overlap 2809290 2809288 TGCATCGTAAATAAC GAGGATGGC GAAAA GCTATCCTC TTATATTATTTTAGG TERM 4433 2809517 - 2809541 + G 70 -3.5 -4.85195 | overlap 2809508 2809519 AGCGTTCCCCAACGC GGCTTTTTCGG CCA CCCAAAAGGAC TTTTTACATTATTTT TERM 4434 2810365 - 2810380 + G 86 -9 -4.30978 | TTATATCCCGTTATT CATCGC ATCA GCGATG TTTTGGTCGATTCAA Aflv_2825 2809472 - 2810962 + | Dipeptide/tripeptide permease TERM 4435 2810954 - 2810988 + T 100 -16 -3.42841 | opp_overlap 2810960 2810963, overlap 2810960 AGCTTTATGAAAGGG GTAAAATAAGCGGC CAAATAA GCCGCTTATTTTAC TTATGATACGGTTCT TERM 4436 2810982 - 2810960 - T 89 -9.9 -4.17491 | opp_overlap 2810960 2810954, overlap 2810963 ATGAAAGGGGTAAAA TAAGCGGCC AAATA AGCCGCTTA TTTTACTTATGATAC TERM 4437 2810960 - 2810982 + T 88 -9.2 -4.51174 | opp_overlap 2810960 2810963, overlap 2810954 ATGAAAGGGGTAAAA TAAGCGGC CAAATAA GCCGCTTA TTTTACTTATGATAC TERM 4438 2810979 - 2810963 - T 76 -7.2 -4.2018 | opp_overlap 2810960 2810954, overlap 2810960 AAAGGGGTAAAATAA GCGGCC AAATA AGCCGC TTATTTTACTTATGA TERM 4439 2811380 - 2811340 - T 73 -10 -2.9043 | gap 1, opp_overlap 2811374, overlap 2811339 2811337 ATTACTACAAAATAG GTAACTATTCAAC-CACAT CATA AAGTGAGCTGAATAGTTAC GACTATTGTTAGGGG Aflv_2826 2811867 - 2811457 - | hypothetical protein Aflv_2827 2812553 - 2811873 - | ABC-type antimicrobial peptide transport system, ATPase component TERM 4440 2811929 - 2811943 + g 73 -2.8 -5.20216 | opp_overlap 2811920 GATAAATCATGCGAT TAGCAT AAG AAGCTA TTTTTTCATCATGTG Aflv_2828 2813403 - 2812558 - | ABC-type antimicrobial peptide transport system, permease component TERM 4441 2813475 - 2813513 + r 100 -16.9 -3.04461 | gap 1 TACTATCTGTATACC CGTGGTGCTAGTTGAGCG CTAG CGCTCAACTAGC-CCAAG TGTTACAAGTGAATA Aflv_2829 2814371 - 2813493 - | Transposase TERM 4442 2814873 - 2814931 + r 100 -12.3 -5.81412 | gap 2, opp_overlap 2814881, overlap 2814881 2814884 ACCCCACTGAAGTCA TT-GAA-AAACAAGAGAGCTGCTATCT ATTCTCC AGATAGCAGCTCTCTTATTTGTTCTAA TTTTTTTTCAATAAC TERM 4443 2814921 - 2814881 - R 100 -18.6 -4.68424 | opp_overlap 2814881 2814873 2814884 GAAGTCATTGAAAAA CAAGAGAGCTGCTATCTA TTCTC CAGATAGCAGCTCTCTTA TTTGTTCTAATTTTT TERM 4444 2814881 - 2814921 + r 100 -15.7 -4.46576 | opp_overlap 2814881, overlap 2814873 2814884 GAAGTCATTGAAAAA CAAGAGAGCTGCTATCT ATTCTCC AGATAGCAGCTCTCTTA TTTGTTCTAATTTTT TERM 4445 2814884 - 2814918 + r 100 -17.4 -4.30023 | opp_overlap 2814881, overlap 2814881 2814873 GTCATTGAAAAACAA GAGAGCTGCTATCT ATTCTCC AGATAGCAGCTCTC TTATTTGTTCTAATT Aflv_2830 2816410 - 2814896 - | hypothetical protein TERM 4446 2815055 - 2815042 - G 71 -3.1 -5.05601 | CATCACACATAAAAA TACTG GAAG CAGCA ATTAAGACATTTTCT TERM 4447 2815544 - 2815566 + g 86 -7.9 -4.70266 | TAAATTTAAATCATC TATTATCGA AAAAG TCGATAATA TTTTTAAATAATCTT TERM 4448 2816558 - 2816544 - R 73 -7.2 -4.08974 | overlap 2816556 ATTGCAGTATATAAA TTCGTT TAT AACGAA TAAAAATTCAATCTG TERM 4449 2816575 - 2816565 - R 78 -4 -5.2204 | opp_overlap 2816565, overlap 2816556 TATAACGAATAAAAA TTCA ATC TGAA TTCTCGCTATTAAGG Aflv_2831 2817648 - 2817091 - | hypothetical protein TERM 4450 2817616 - 2817632 + g 76 -6.7 -4.42667 | CAATAATAGAACTGC TGTTATT ACA AATAACA TTTTAATCCTTTTCA TERM 4451 2817841 - 2817867 + r 71 -9.4 -2.87051 | opp_overlap 2817846, overlap 2817840 2817846 CTGCTTTTCTATCTC CAAAAGCAAGCG AGA CGCTGGCTTCTG CTTTACTAATACCCC TERM 4452 2817862 - 2817846 - R 75 -7.9 -4.11216 | opp_overlap 2817846 2817841 2817840 TTTCTATCTCCAAAA GCAAGCG AGA CGCTGGC TTCTGCTTTACTAAT TERM 4453 2817846 - 2817862 + r 70 -7.9 -3.63251 | opp_overlap 2817846, overlap 2817841 2817840 TTTCTATCTCCAAAA GCAAGCG AGA CGCTGGC TTCTGCTTTACTAAT TERM 4454 2818481 - 2818469 - R 70 -2.7 -5.08824 | TTTCGACCCAAAAAA CATTG ATC CAATA ACATAATTATTTAAA TERM 4455 2818796 - 2818770 - R 100 -9.6 -5.67283 | opp_overlap 2818768 AACGTAAATAAAAAA TACTCATTCC TAAAGAT GGAATGAGTA AACTTAATCCCTAAA Aflv_2832 2819400 - 2818837 - | hypothetical protein Aflv_2833 2819555 - 2819400 - | Uncharacterized conserved protein, contains CXXC motif TERM 4456 2819609 - 2819580 - R 100 -17.3 -3.14132 | opp_overlap 2819580 2819585, overlap 2819585 CTCCTCGTTTACGAA TGAAACGACAGGG AATG CCCTGCCGTTTCA TTATAGTGATTGTTT TERM 4457 2819580 - 2819609 + r 100 -15.1 -3.50358 | opp_overlap 2819580 2819585, overlap 2819585 CTCCTCGTTTACGAA TGAAACGACAGGG AATG CCCTGCCGTTTCA TTATAGTGATTGTTT TERM 4458 2819604 - 2819585 - R 90 -11.4 -3.95584 | opp_overlap 2819580 2819585, overlap 2819580 CGTTTACGAATGAAA CGACAGGG AATG CCCTGCCG TTTCATTATAGTGAT TERM 4459 2819585 - 2819604 + r 83 -9.2 -4.0251 | opp_overlap 2819585 2819580, overlap 2819580 CGTTTACGAATGAAA CGACAGGG AATG CCCTGCCG TTTCATTATAGTGAT Aflv_2834 2820818 - 2819610 - | Trypsin-like protein serine protease, contains C-terminal PDZ domain, Do-like protein Aflv_2835 2821728 - 2820931 - | Metal-dependent hydrolase of the beta-lactamase superfamily III Aflv_2836 2822531 - 2821725 - | hypothetical protein Aflv_2837 2823579 - 2822497 - | hypothetical protein TERM 4460 2823186 - 2823204 + gr 71 -3 -4.9138 | opp_overlap 2823177 2823199 2823201, overlap 2823187 2823201 TTAATACGAGCGGAC GCGCTGGT AAA AACAGCGA TTTTGTTTCGCTAAT Aflv_2838 2823853 - 2823728 - | hypothetical protein Aflv_2839 2825645 - 2823831 - | Signal transduction histidine kinase TERM 4461 2824225 - 2824235 + g 93 -4 -5.87996 | opp_overlap 2824212 2824225 AAGTCTCGAACGAAC GAAA CGT TTTC TTTTTTTGTTAATTC TERM 4462 2824524 - 2824510 - G 73 -10 -2.92102 | opp_overlap 2824510, overlap 2824509 ACATTGGCTACAAAC TCGCGA CGA TCGCGA TCAATTTTTTCATGC TERM 4463 2824510 - 2824524 + g 73 -10 -2.94298 | opp_overlap 2824510 2824509 ACATTGGCTACAAAC TCGCGA CGA TCGCGA TCAATTTTTTCATGC yycF 2826360 - 2825650 - | DNA-binding response regulator, OmpR family (REC-wHTH domains) TERM 4464 2826446 - 2826421 - R 100 -9.1 -5.86976 | TTATAAAATAAAAAA GCATAGACACA TATA CGTATCTATGC TTGCAAGTGGCTCGG TERM 4465 2826607 - 2826578 - R 74 -4.2 -5.08601 | overlap 2826580 CTATTTCAATAAAAA TGGCGGTTCCGA CGGGAT TCGAACCCGCGA TCTCCTGCGTGACAG TERM 4466 2826742 - 2826720 - R 93 -7.7 -5.40474 | opp_overlap 2826720 AGTTTTTTAAAAAAA CGCCGACGA ACGAG TCATCGACG TTTTTTCTTATGCAT TERM 4467 2826720 - 2826742 + r 83 -3.3 -5.56673 | opp_overlap 2826720 AGTTTTTTAAAAAAA CGCCGACGA ACGAG TCATCGACG TTTTTTCTTATGCAT purA 2828069 - 2826750 - | Adenylosuccinate synthetase TERM 4468 2828111 - 2828128 + r 74 -4.9 -4.8245 | opp_overlap 2828111 AAATCAATAAAAAAC CGAACAT TTAT ATGTTTG TTTGTTATTTTTATT dnaC 2829522 - 2828152 - | Replicative DNA helicase TERM 4469 2829548 - 2829587 + r 91 -11.7 -4.08579 | gap 1, opp_overlap 2829548 TTCTCATAAGAAAAA TGTGATTATATGCACGGA AAAAA TCCG-GCATAAAATCACA TTTCATTACTTTTGT TERM 4470 2829587 - 2829548 - R 100 -11.7 -5.18726 | gap 1, opp_overlap 2829548 TTCTCATAAGAAAAA TGTGATTATATGCACGGA AAAAA TCCG-GCATAAAATCACA TTTCATTACTTTTGT rplI 2830042 - 2829593 - | Ribosomal protein L9 TERM 4471 2829731 - 2829750 + g 74 -6.5 -4.51743 | TTTAATATCATGTTG TTGCTGA AGCGCC TCAGCAA TTTGTTTGCTCGTGA Aflv_2844 2832012 - 2830039 - | Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain TERM 4472 2831724 - 2831711 - G 78 -2.4 -5.55695 | CAAGAAGATAAAAAA GAGT TTGTCC ACTC AATTTCTAACTCATC Aflv_2845 2832966 - 2832031 - | Predicted membrane protein TERM 4473 2832986 - 2833024 + r 76 -4.7 -5.06414 | opp_overlap 2832992, overlap 2832992 TTCCCTCCTTGAAAG CAAAAAGCAGTAAGG CTCCGTCCC CCTTACTGCTTTCTC TTTTTATTCGCCCGC TERM 4474 2832992 - 2833018 + r 82 -8.1 -4.64423 | opp_overlap 2832992, overlap 2832986 CCTTGAAAGCAAAAA GCAGTAAGG CTCCGTCCC CCTTACTGC TTTCTCTTTTTATTC TERM 4475 2833018 - 2832992 - R 86 -8.1 -4.98531 | opp_overlap 2832992 2832986 CCTTGAAAGCAAAAA GCAGTAAGG CTCCGTCCC CCTTACTGC TTTCTCTTTTTATTC rpsR 2833282 - 2833028 - | Ribosomal protein S18 ssb 2833797 - 2833297 - | Single-stranded DNA-binding protein rpsF 2834111 - 2833815 - | Ribosomal protein S6 Aflv_2849 2835307 - 2834207 - | Predicted GTPase, probable translation factor TERM 4476 2835287 - 2835257 - G 86 -9.8 -4.00756 | opp_overlap 2835257 2835256, overlap 2835258 GATTGCATTAAATAA CGTTGATTTTCCGA CGT TCGGAAGACCAACA ATTCCTGCTGTTAAA TERM 4477 2835286 - 2835258 - G 79 -11.1 -2.99972 | opp_overlap 2835257 2835256, overlap 2835257 ATTGCATTAAATAAC GTTGATTTTCCGA CGT TCGGAAGACCAAC AATTCCTGCTGTTAA TERM 4478 2835337 - 2835351 + r 95 -6.4 -5.62552 | CTTCGTCTATTCCTC GTGCTT TAC GAGCAC TTTTTTCATTTTTTT Aflv_2850 2835522 - 2835328 - | Uncharacterized conserved protein, contains CXXC motif Aflv_2851 2836421 - 2835546 - | Small-conductance mechanosensitive channel TERM 4479 2835662 - 2835678 + g 81 -10.9 -3.27498 | opp_overlap 2835661 ACGCACGTGCAATAT GCCAATG ACG CATTGGC TTCGTCTCGCATGTA Aflv_2852 2836495 - 2837193 + | Spore protease related protein Aflv_2853 2837889 - 2837182 - | Uncharacterized membrane protein, possible Na+ channel or pump spo0J 2838770 - 2837907 - | Stage 0 sporulation protein J (antagonist of Soj), contain ParB-like nuclease domain TERM 4480 2838155 - 2838197 + g 89 -3.5 -5.63012 | opp_overlap 2838157, overlap 2838138 2838157 CCTCAAGTTGGCGAA CATTGAGCGATTGTTGAAT AACTC GTTCAATAACCGCTGAAAG TTTTTGTTTGTTTTT soj 2839536 - 2838763 - | ATPase involved in chromosome partitioning, soj TERM 4481 2839623 - 2839601 - R 87 -4.9 -5.38839 | opp_overlap 2839601 2839599 TATACAAAAAGAAAA CCTCATC GTCATTTTG GATGAGG TGTTATTTTTGTTTC Aflv_2856 2840516 - 2839626 - | ParB family protein gidB 2841229 - 2840513 - | Methyltransferase GidB TERM 4482 2841165 - 2841201 + g 70 -7.4 -3.74872 | gap 1, opp_overlap 2841164 2841163 TCGAATTGAGTAAGT TGCT-GAGGAGAAAGCG AAAT CCCTTTCTCCTCTAACA TTTGGTGAAATACAT gidA 2843156 - 2841240 - | Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme, GidA TERM 4483 2842661 - 2842678 + g 72 -9.9 -2.77043 | overlap 2842660 CGCGTAAAAACGTTC CTGTCGT GATA ACGACAG CTTTAGCATAATAGC trmE 2844535 - 2843141 - | tRNA modification GTPase, TrmE TERM 4484 2844692 - 2844665 - R 100 -7.1 -5.97575 | opp_overlap 2844665 2844663 AATTTACAAAAAAAA TTCTCTAGGAA CGACTT CCCCTAGAGAA TGTTTACCTTTTTAG jag 2845313 - 2844696 - | SpoIIIJ-associated RNA binding protein Jag spoIIIJ 2846077 - 2845310 - | Stage III sporulation protein J, essential for sigma-G activity rnpA 2846479 - 2846141 - | RNase P protein component TERM 4485 2846543 - 2846522 - R 100 -10.9 -5.24129 | TCCCGTTAGAAAAAA GACCACTGA TCGT TCAGTGGCC TATGCAGATAATACT rpmH 2846686 - 2846543 - | Ribosomal protein L34 TERM 4486 2846617 - 2846635 + g 88 -11 -3.76492 | TCTTTGTGCTCATAC GTGCACGG AAA CCGTGTAC TTTGCTGCGCTTCCG