TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.578115 %AT, 2436386 nt, 14265 terms. Intergenic: 0.606667 %AT, H2T: 515596 nt, 2493 terms; T2T: 99737 nt, 1970 terms; H2H: 122285 nt, 1273 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|212637849|ref|NC_011567.1| Anoxybacillus flavithermus WK1, complete genome (length 2846746) TERM 1 1528 - 1514 - g 75 -7.2 -4.2803 | overlap 1522 CATTTTAATGTAAAA CTTGAA GAT TTCAAG GCGAAAAAGCGGACA dnaA 401 - 1744 + | DNA replication initiation ATPase TERM 2 1769 - 1800 + F 100 -13.8 -3.82857 | overlap 1766 CTACTTTATGTTTGT GCACAGTCTGTCCA CATG TGGATAGTCTGTGC TTCCTTTGTTTTACT TERM 3 1840 - 1858 + F 72 -3.2 -5.0133 | ACATAATCACAGCGC CTATTACT ATG ATTAATAG TTTTTTAAAAAAATA TERM 4 2956 - 2971 + G 71 -4 -4.7497 | gap 1 TAAAATTAGTTTTAC TGGT-GC AAT GCGACCA TTTTTAATCCGTCCG dnaN 1901 - 3037 + | DNA polymerase sliding clamp subunit TERM 5 3035 - 3065 + F 81 -6.9 -4.6971 | opp_overlap 3040, overlap 3040 CCTGTGCGCACATAT TAAAAGCTGCTAG ATGAA CTAGCAGCTTTCC TTTTCTTCACCTTTC TERM 6 3040 - 3060 + F 93 -11.2 -4.3295 | opp_overlap 3040, overlap 3035 GCGCACATATTAAAA GCTGCTAG ATGAA CTAGCAGC TTTCCTTTTCTTCAC TERM 7 3060 - 3040 - f 93 -11.2 -4.39166 | opp_overlap 3035 3040 GCGCACATATTAAAA GCTGCTAG ATGAA CTAGCAGC TTTCCTTTTCTTCAC TERM 8 3163 - 3152 - g 82 -3 -5.5454 | overlap 3142 TGAAAGAAATAAAAA TTTC AACA GAAA CCATTACACTCGGAC Aflv_0003 3136 - 3348 + | S4-like RNA binding protein TERM 9 3350 - 3361 + G 78 -5.8 -4.85782 | CGATTTGTTCGTGAA GGTG GGAG CACC TTTGTTTTTGGAACA recF 3339 - 4478 + | Recombinational DNA repair ATPase RecF TERM 10 6073 - 6083 + G 90 -4 -5.64274 | CACACATTCGTACAC TGTT ATT AACA TTTTTTTATCGCTAC gyrB 4533 - 6455 + | DNA gyrase subunit B gyrA 6528 - 8978 + | DNA gyrase subunit A TERM 11 8973 - 8998 + F 72 -8.3 -3.53012 | gap 1, opp_overlap 8964 8976 8980 8981, overlap 8981 GAACAATTGCAAGAA GAATAGAGGGGG GTT CCCCC-CTATGC TTTACAAAGGCGGGG TERM 12 8995 - 8976 - f 86 -10 -3.97139 | opp_overlap 8973 8981, overlap 8964 8980 8981 CAATTGCAAGAAGAA TAGAGGGG GGTT CCCCCCTA TGCTTTACAAAGGCG TERM 13 8992 - 8980 - f 77 -10.5 -3.35255 | opp_overlap 8973 8981, overlap 8976 8964 8981 TGCAAGAAGAATAGA GGGGG GTT CCCCC CTATGCTTTACAAAG TERM 14 8981 - 8993 + F 75 -10.5 -3.00525 | opp_overlap 8980 8981 8976 8964, overlap 8973 GCAAGAAGAATAGAG GGGGG TTC CCCCC TATGCTTTACAAAGG TERM 15 8993 - 8981 - f 72 -10.5 -2.6043 | opp_overlap 8973 8981, overlap 8980 8976 8964 GCAAGAAGAATAGAG GGGGG TTC CCCCC TATGCTTTACAAAGG Aflv_0007 8995 - 10107 + | c-di-GMP phosphodiesterase class II (HD-GYP domain) TERM 16 10100 - 10133 + T 100 -6.3 -6.41805 | gap 1, opp_overlap 10100 10105 10106 GCATTGAAGAAATTA TAAAATGACAATGG CGATTGT CCAT-GTCATTTTA TTTTTTTTTTAATAA TERM 17 10419 - 10404 - T 72 -9 -3.32343 | overlap 10415 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 18 11529 - 11517 - T 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 19 11856 - 11838 - T 73 -10.4 -2.85909 | AAAAGCGGAGAACGA TTCTTGAC GTA GTCAAGAA AACATCCGACGGAAG TERM 20 11891 - 11859 - T 74 -4.8 -4.68384 | gap 1, overlap 11862 11871 11890 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 21 11976 - 11960 - T 72 -3.6 -5.07523 | overlap 11961 TAGACATAAAGAAAA GCGGAG GACTT CTCCGT ACATGTTGACAAACA TERM 22 12800 - 12781 - T 89 -12.2 -3.66803 | opp_overlap 12780 12779 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 23 13837 - 13819 - T 71 -6 -4.21194 | overlap 13823 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 24 14333 - 14320 - T 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 25 15515 - 15481 - T 70 -7.7 -3.72453 | gap 1, opp_overlap 15482, overlap 15474 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGGTTCGAGG TERM 26 15902 - 15879 - T 93 -11.1 -5.06414 | opp_overlap 15879 GCCGGGCAAGAAAAA GACCAAGAC AAGTTA GTCTTGGTC TTTTTTATTATGTAA TERM 27 15879 - 15902 + T 100 -11.1 -5.60689 | opp_overlap 15879 GCCGGGCAAGAAAAA GACCAAGAC AAGTTA GTCTTGGTC TTTTTTATTATGTAA yaaC 16592 - 15891 - | hypothetical protein TERM 28 16165 - 16128 - G 70 -7.9 -3.63744 | opp_overlap 16141, overlap 16132 16133 16137 16141 TGCTTGTTTAAAATA TAAATCAAATAAAGGAG TTAG CTCCTCTATCTGCTCTA ACAACTGTTTCATGC TERM 29 16161 - 16132 - G 74 -6.5 -4.45168 | opp_overlap 16141, overlap 16128 16133 16137 16141 TGTTTAAAATATAAA TCAAATAAAGGAG TTAG CTCCTCTATCTGC TCTAACAACTGTTTC TERM 30 16160 - 16133 - G 76 -10 -3.26378 | opp_overlap 16141, overlap 16132 16128 16137 16141 GTTTAAAATATAAAT CAAATAAAGGAG TTAG CTCCTCTATCTG CTCTAACAACTGTTT TERM 31 16156 - 16137 - G 75 -7.2 -4.25088 | opp_overlap 16141, overlap 16133 16132 16128 16141 AAAATATAAATCAAA TAAAGGAG TTAG CTCCTCTA TCTGCTCTAACAACT TERM 32 16152 - 16141 - G 75 -5.8 -4.65182 | opp_overlap 16141, overlap 16137 16133 16132 16128 TATAAATCAAATAAA GGAG TTAG CTCC TCTATCTGCTCTAAC TERM 33 16201 - 16216 + g 84 -6.2 -5.00884 | opp_overlap 16215 TTTTCCCCATATGCA TGTTTC ACAT GAAACA TTTTTTCAGAAAAAT TERM 34 18093 - 18081 - g 82 -4.8 -5.33785 | AACTACGAGAAAAAA CGCA ATTTG TGCG CATGACTGGAGCAGG guaB 16709 - 18175 + | IMP dehydrogenase/GMP reductase TERM 35 18184 - 18212 + F 100 -6.8 -6.34424 | opp_overlap 18160 18184 TATGTAGTAAATGCA TAGGCAGAGG TGGAAGATT CCTCTGTCTA TTTTTTTTTTCAAGA dacA 18260 - 19603 + | D-alanyl-D-alanine carboxypeptidase TERM 36 19598 - 19629 + F 100 -14 -5.25772 | opp_overlap 19605, overlap 19625 GCGATCAAAGGGTTA TTTTAAAGCTCTCT TTTT AGAGGGCTTTAAAA TTTTTATTATGATTT pdxS 19816 - 20700 + | Pyridoxine biosynthesis enzyme PDX1/PDX2, synthetase subunit TERM 37 20867 - 20879 + G 78 -9.1 -3.767 | opp_overlap 20864 20867 CAGGTGGGGAAAGTA CGACG ATG CGTCG TTTAATGGATAAATA pdxT 20719 - 21297 + | Pyridoxine biosynthesis enzyme PDX1/PDX2, glutaminase subunit TERM 38 21556 - 21583 + F 100 -10.6 -5.72053 | overlap 21548 GGCAACGCGGGAGCA CTCTCGTCCC TTTCTTTC GGGACGGGAG TTTTTTATTTCATTA TERM 39 21792 - 21776 - g 77 -6.5 -4.72473 | opp_overlap 21791 GGAATTAAAAAATAA GCGAAAC GAT GTGTCGC AACAAATTGCTTTAC TERM 40 21837 - 21825 - g 88 -3.4 -5.77853 | opp_overlap 21825 AAGCGTGAAAAAAAA GATG CGGAT CATC TCATTGCTGAAATGC TERM 41 22007 - 22019 + G 74 -6.3 -4.54727 | AATTCGTAAATGGGG TGAAC CGC GTTCA TTTTCCTTTGAACCG TERM 42 22134 - 22150 + G 76 -10.9 -2.6585 | overlap 22133 TATAAAGGACTTGGG GCACGTT TGG AACGTGC ATTGATTAACTTTAT TERM 43 22286 - 22272 - g 80 -10 -3.66772 | CCAAAGTTTGAAGAA GATGCG TTT CGCATC GAAAGTGAAGATTAC serS 21618 - 22898 + | Seryl-tRNA synthetase TERM 44 22916 - 22899 - T 70 -8.4 -3.33969 | opp_overlap 22899 GAAGTGATTTCATAA GGGGAG AACTTG CTCCCC TTTTTTATAAAAAAT TERM 45 22899 - 22916 + T 93 -8.4 -5.24531 | opp_overlap 22899 GAAGTGATTTCATAA GGGGAG AACTTG CTCCCC TTTTTTATAAAAAAT TERM 46 23126 - 23146 + T 100 -9.1 -5.58522 | opp_overlap 23126 TGTTTATTGAAATAA TTCGTTACG ATA TGTAACGAA TTTTTGTTTTATATA TERM 47 23146 - 23126 - T 77 -8.4 -3.96216 | opp_overlap 23126 TGTTTATTGAAATAA TTCGTTAC GATAT GTAACGAA TTTTTGTTTTATATA TERM 48 23201 - 23172 - T 86 -4.4 -5.35721 | gap 1, opp_overlap 23174 23177, overlap 23177 ATATAAGAATAAAAA GTAAAGGATGCCT GAACT AGGCATCC-TTAT TTTTTTAACGTGCGA TERM 49 23174 - 23200 + T 100 -10.2 -5.44119 | opp_overlap 23172 23177, overlap 23177 ATAAGAATAAAAAGT AAAGGATGCCTG AAC TAGGCATCCTTA TTTTTTTAACGTGCG TERM 50 23177 - 23197 + T 100 -11.9 -4.80853 | opp_overlap 23177 23172, overlap 23174 AGAATAAAAAGTAAA GGATGCCTG AAC TAGGCATCC TTATTTTTTTAACGT TERM 51 23197 - 23177 - T 93 -11.2 -4.44392 | opp_overlap 23174 23177, overlap 23172 AGAATAAAAAGTAAA GGATGCCT GAACT AGGCATCC TTATTTTTTTAACGT dck 23866 - 23198 - | Deoxyadenosine/deoxycytidine kinase TERM 52 23617 - 23632 + g 89 -6.2 -5.38549 | overlap 23623 GGACAAATCCTCCTC CGTATT CAAA AATACG TTTTTGTTCTTTGAA dgk 24501 - 23863 - | Deoxyguanosine kinase Aflv_0016 24592 - 25125 + | Cytosine/adenosine deaminase TERM 53 25487 - 25509 + F 100 -9.9 -5.19261 | opp_overlap 25486 ATAGATAGGACACAG GCACTTGCT CAAAT GGCAAGTGC TTTTTTCATGCGTTT TERM 54 26360 - 26370 + G 71 -4.6 -4.64657 | overlap 26369 AAAAAAGACGGTTGA GGCG TTA CGTC TTTTTCAAGATTTAA dnaX 25572 - 27251 + | DNA polymerase III tau subunit yaaK 27259 - 27591 + | hypothetical protein TERM 55 27650 - 27687 + G 80 -2.6 -5.47159 | overlap 27651 ACAGTTTTATGAAAT TGCCAGGC-ATCGGACCG AAAA CGG-CCGTCCGTCTGGCG TTTTTTGTGTTAAAC recR 27601 - 28197 + | Recombinational DNA repair protein RecR TERM 56 28327 - 28309 - g 84 -3.8 -5.50925 | overlap 28310 AATTAATAGAAAAAA GTGTCGAA CCA TCCGACAA AGTCATCTTCGATTT TERM 57 28326 - 28310 - g 70 -7.3 -3.88115 | overlap 28309 ATTAATAGAAAAAAG TGTCGAA CCA TCCGACA AAGTCATCTTCGATT yaaL 28197 - 28418 + | hypothetical protein TERM 58 28407 - 28429 + F 86 -10.6 -3.84712 | opp_overlap 28406 28405 CGAAAAGTGACAATT GGGAAGGG ATGATTC CCCTTCCC TTTCATATAGGCTTG bofA 28415 - 28771 + | Sporulation regulation protein BofA TERM 59 28769 - 28788 + G 100 -9.4 -5.7946 | opp_overlap 28757 28773 CAATATGTCATTTCA TAAACGGA CATA TCCGTTTA TTTTTTTGTTGACGA Aflv_0022 28758 - 28910 + | hypothetical protein TERM 60 30594 - 30562 - f 74 -4.8 -4.68384 | gap 1, overlap 30565 30574 30593 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 61 30679 - 30663 - f 72 -3.6 -5.07523 | overlap 30664 TAGACATAAAGAAAA GCGGAG GACTT CTCCGT ACATGTTGACAAACA TERM 62 31481 - 31462 - f 89 -12.2 -3.66803 | opp_overlap 31461 31460 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 63 32518 - 32500 - f 71 -6 -4.21194 | overlap 32504 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 64 33014 - 33001 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 65 34330 - 34307 - f 90 -8.9 -5.06414 | opp_overlap 34307 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTCGGTC TTTTTTCTTTTTTGC TERM 66 34307 - 34330 + F 100 -6.7 -6.04324 | opp_overlap 34307 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTCGGTC TTTTTTCTTTTTTGC csfB 34359 - 34607 + | Uncharacterized conserved protein CsfB Aflv_0024 34689 - 36113 + | Arginine/lysine/ornithine decarboxylase tmk 36115 - 36744 + | Thymidylate kinase holB 36755 - 37753 + | ATPase involved in DNA replication HolB yaaT 37746 - 38573 + | Regulator of signaling phosphorelay (PSP1/tpl family) yabA 38589 - 38936 + | Regulator of replication initiation timing TERM 67 38929 - 38969 + F 80 -10.6 -3.28712 | opp_overlap 38934, overlap 38934 TGTCATTTTTAAATA AAAAATAGCCTTTCTGAC AAATG GTCTGGAAGGCTATTTTG TTGTAGAAAGAGGGA TERM 68 38964 - 38934 - f 100 -8.3 -5.63517 | opp_overlap 38929 38934 TTTTTAAATAAAAAA TAGCCTTTCTGAC AAATG GTCTGGAAGGCTA TTTTGTTGTAGAAAG TERM 69 38934 - 38964 + F 93 -10.5 -4.77165 | opp_overlap 38934, overlap 38929 TTTTTAAATAAAAAA TAGCCTTTCTGAC AAATG GTCTGGAAGGCTA TTTTGTTGTAGAAAG yabB 38991 - 39725 + | Methyltransferase (UbiE/COQ5 family) yabC 39732 - 40598 + | Tetrapyrrole methyltransferase family enzyme TERM 70 40631 - 40606 - T 100 -11.3 -5.57396 | opp_overlap 40606 ATAAGTAAGAAAAAA GTTTCTCTAGA AAAA CCTAGAGAAAC TTTTTATTTTGATTG TERM 71 40606 - 40631 + T 100 -10.6 -5.54338 | opp_overlap 40606 ATAAGTAAGAAAAAA GTTTCTCTAG AAAAAC CTAGAGAAAC TTTTTATTTTGATTG abrB 40943 - 40635 - | Transcriptional regulator AbrB TERM 72 41386 - 41346 - H 73 -8.4 -3.76568 | gap 2, opp_overlap 41355, overlap 41354 TGATCGAGAATACAA GTATGCAATCGCTCTCGTCC TTT GGGCGAGAGCGTTT-C-TAC TACACGTGCGACAAG TERM 73 41380 - 41354 - H 83 -12.2 -3.16079 | opp_overlap 41355, overlap 41346 AATACAAGTATGCAA TCGCTCTCGTCC TTT GGGCGAGAGCGT TTCTACTACACGTGC TERM 74 41355 - 41379 + H 100 -17.9 -3.96624 | opp_overlap 41354 41346 ATACAAGTATGCAAT CGCTCTCGTCC TTT GGGCGAGAGCG TTTCTACTACACGTG TERM 75 41615 - 41605 - g 71 -2.4 -5.11112 | AAAGCGGAAGAAAAA GGGG TTA CTCC ACAACAGTATGTCGA metS 41392 - 43362 + | Methionyl-tRNA synthetase TERM 76 43356 - 43392 + F 100 -14 -3.80877 | opp_overlap 43354 43364, overlap 43360 43364 AAATGGTGCAAAAGT GAAGTAAAGAGGTGTT GCGAA AACACCTCTTTGTTTC TATTTTGTAACGTAA TERM 77 43360 - 43388 + F 93 -11.2 -4.51238 | opp_overlap 43354 43364, overlap 43356 43364 GGTGCAAAAGTGAAG TAAAGAGGTGTT GCGAA AACACCTCTTTG TTTCTATTTTGTAAC TERM 78 43384 - 43364 - f 86 -9.8 -3.99779 | opp_overlap 43360 43356 43364, overlap 43354 CAAAAGTGAAGTAAA GAGGTGTT GCGAA AACACCTC TTTGTTTCTATTTTG TERM 79 43364 - 43384 + F 93 -9.8 -4.77047 | opp_overlap 43364 43354, overlap 43360 43356 CAAAAGTGAAGTAAA GAGGTGTT GCGAA AACACCTC TTTGTTTCTATTTTG yabD 43479 - 44246 + | Mg-dependent DNAse yabE 44451 - 45644 + | hypothetical protein TERM 80 45648 - 45669 + F 100 -7.3 -5.68023 | opp_overlap 45648 ATTATAAAGTAATAA CAGAGGGTT TCGC GATCCTCTG TTTTTTTCGTTATAA rnmV 45706 - 46278 + | Ribonuclease M5 (TOPRIM domain) ksgA 46271 - 47158 + | Dimethyladenosine transferase (rRNA methylation) TERM 81 47150 - 47164 + G 95 -7.1 -5.43866 | opp_overlap 47150 CCCATTTTTTATGAA GAGGC TTAAT GCCTC TTTTTTTACACGTTC yabG 47145 - 48110 + | Peptidase involved in the proteolysis and maturation of SpoIVA and YrbA proteins TERM 82 48156 - 48119 - f 83 -7.2 -4.66814 | gap 1, opp_overlap 48117 48120, overlap 48120 48121 AACATAAACAACAAA CCTCTTGTCTTTTTGCC TTCGT GGTAAAAAGACAAG-GA TATCATTTTGTTTTT TERM 83 48155 - 48120 - f 70 -8.5 -3.37648 | gap 1, opp_overlap 48117 48120, overlap 48119 48121 ACATAAACAACAAAC CTCTTGTCTTTTTGCC TTCGT GGTAAAAAGACAAG-G ATATCATTTTGTTTT TERM 84 48120 - 48156 + F 73 -9.6 -3.2568 | opp_overlap 48120 48119 48121, overlap 48117 ACATAAACAACAAAC CTCTTGTCTTTTTGCC TTCGT GGTAAAAAGACAAGGA TATCATTTTGTTTTT veg 48266 - 48586 + | Uncharacterized conserved protein Veg TERM 85 48595 - 48618 + F 89 -4.5 -5.65177 | TTCATGACGGTTAAG GAGGCGACC AATATC GGTGGTCTC TTTTTTTGTAGCTAT TERM 86 49117 - 49127 + G 71 -6.8 -4.2349 | GAGCGGAGATTGGCT CGGA CGT TCCG TTTTGCGTATACGGA ispE 48705 - 49580 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase purR 49596 - 50420 + | Transcriptional repressor of the purine operon PurR yabJ 50454 - 50834 + | Translation initiation inhibitor, yjgF family TERM 87 51176 - 51162 - g 73 -10 -3.05844 | TGTTTTAGCTGAATA TCACCG TGC CGGTGA GTTGGAAAAAGAGCT spoVG 50911 - 51213 + | Stage V sporulation protein G required for spore cortex synthesis TERM 88 51226 - 51249 + F 78 -7.5 -4.34402 | gap 1, opp_overlap 51226, overlap 51246 TAATTATAAGAAAAA GGACCC-TCT CGAGA AGAAGGGTCC TTTTCATATGGAGAA TERM 89 51249 - 51226 - f 91 -8.2 -5.24416 | gap 1, opp_overlap 51226 51246 TAATTATAAGAAAAA GGACCC-TCTC GAG AAGAAGGGTCC TTTTCATATGGAGAA gcaD 51369 - 52775 + | UDP-N-acetylglucosamine pyrophosphorylase prs 52793 - 53743 + | Phosphoribosylpyrophosphate synthetase ctc 53800 - 54426 + | Ribosomal protein L25 (general stress protein Ctc) TERM 90 54429 - 54452 + G 100 -11.8 -4.16943 | opp_overlap 54421 54419 AACAACACCGTGACG GACGTAGCCA TCAT TGGTTACGTC TTTTGCGGTATGGAG spoVC 54423 - 55046 + | Peptidyl-tRNA hydrolase SpoVC yabK 55065 - 55343 + | Uncharacterized conserved protein, contains two CXXC motifs TERM 91 55346 - 55366 + G 100 -9.7 -5.26155 | opp_overlap 55344, overlap 55347 55360 ATTTATTCAATGATT GGCTTTGGG TTA CCCAAAGCG TTTTTGTATTTATGT TERM 92 55347 - 55365 + G 100 -13.2 -3.73253 | opp_overlap 55344, overlap 55346 55360 TTTATTCAATGATTG GCTTTGGG TTA CCCAAAGC GTTTTTGTATTTATG TERM 93 55564 - 55576 + G 74 -6.3 -4.41348 | AGCGACCTTTATGCA TTGTG ACG CACAA TTTATTTCAAGCGCA mfd 55344 - 58913 + | Transcription-repair coupling factor (helicase, mfd) TERM 94 59197 - 59172 - g 76 -7.7 -4.08317 | gap 1, opp_overlap 59174, overlap 59181 59183 TAATTCCAAAGGAAA TTCGCAGAACAC TTC GTATTC-GCGAA GGGGACCCACTTGAA TERM 95 59515 - 59496 - g 74 -9.4 -3.29142 | overlap 59492 59494 GTCATGAAGAACATA TGCAATCA TACG TGATTGCA CCGATTATTGCTGGA spoVT 59108 - 59644 + | Transcriptional regulator AbrB family TERM 96 59662 - 59646 - f 87 -8.7 -4.49364 | opp_overlap 59646 AAATGGAACAATAAA GGTAGCA TCT CGCTACC TTTTTTTGATGTATG TERM 97 59646 - 59662 + F 100 -8 -5.60864 | opp_overlap 59646 AAATGGAACAATAAA GGTAGC ATCTC GCTACC TTTTTTTGATGTATG TERM 98 59939 - 59951 + G 73 -2.6 -5.21459 | TCAACATATAAGTTT GCTG TTGTT CGGC TTTCTTTTTATTTTT TERM 99 60553 - 60570 + G 70 -3.5 -4.86621 | gap 1, overlap 60557 GTTTATTCAGCTTGG GACAGTAG TAG CTACT-TC TTTTTCATTAGCACT TERM 100 60557 - 60567 + G 70 -5.4 -4.53777 | overlap 60553 ATTCAGCTTGGGACA GTAG TAG CTAC TTCTTTTTCATTAGC TERM 101 61112 - 61124 + G 74 -7.7 -3.91821 | GGACGTCTGTTTTCA TCGCT TCA AGCGA TTATTGGTGTTTTTA yabM 59693 - 61258 + | Polysaccharide biosynthesis protein, Mvin family TERM 102 61353 - 61339 - g 70 -5.6 -4.35116 | opp_overlap 61339 61341, overlap 61341 TACCGTACATTAAAA CAGGCG AAT CGCCTC TTTTTACGAACGAAA TERM 103 61339 - 61353 + G 73 -5.6 -4.56597 | opp_overlap 61339 61341, overlap 61341 TACCGTACATTAAAA CAGGCG AAT CGCCTC TTTTTACGAACGAAA TERM 104 61341 - 61351 + G 75 -8.2 -3.90048 | opp_overlap 61339 61341, overlap 61339 CCGTACATTAAAACA GGCG AAT CGCC TCTTTTTACGAACGA TERM 105 61351 - 61341 - g 75 -8.2 -3.77806 | opp_overlap 61341 61339, overlap 61339 CCGTACATTAAAACA GGCG AAT CGCC TCTTTTTACGAACGA yabN 61261 - 62712 + | Tetrapyrrole methyltransferase domain fused to a MazG family NTP pyrophosphatase domain yabO 62714 - 62971 + | Ribosome-associated heat shock protein yabP 63035 - 63331 + | Spore coat-associated protein yabQ 63328 - 63936 + | Membrane protein involved in spore cortex formation TERM 106 64004 - 63992 - g 80 -2.7 -5.58209 | GTAAAGTGAAAAAAA TACAA ACA TCGTA TGTCATTCAACAAGA TERM 107 64048 - 64038 - g 88 -6.8 -5.21506 | ACAAGAATATAAAAA GACG CAA CGTC GTAAAAAAAAGGTGA divIC 63958 - 64329 + | Septum formation initiator TERM 108 64358 - 64391 + G 100 -9.9 -4.7416 | overlap 64360 AAGGCTTATTGACAC TTGTTTTTTTCATTA TGTA TAATGAAAGAAACGA TTTTTCAGATTTTAA TERM 109 64360 - 64389 + G 74 -10.3 -2.64962 | overlap 64358 GGCTTATTGACACTT GTTTTTTTCATTA TGTA TAATGAAAGAAAC GATTTTTCAGATTTT yabR 64358 - 64816 + | RNA binding protein (S1 domain) TERM 110 64853 - 64875 + F 82 -7.8 -4.59424 | opp_overlap 64853, overlap 64874 AGGCAGTTTATACAA GCATCCAT TCTATTT ATGGATGC TTTTCGTTTGGATTT TERM 111 65108 - 65149 + F 100 -16.3 -4.03978 | gap 1, opp_overlap 65117, overlap 65117 GAATCCCGTACGGGT CATAAGAAACACCAATTTCG TCA CGAAATTGGTGTTTTTT-TG TTTATATAAGCCGTT TERM 112 65141 - 65117 - f 100 -15.9 -4.30987 | opp_overlap 65108 65117 ACGGGTCATAAGAAA CACCAATTTCG TCA CGAAATTGGTG TTTTTTTGTTTATAT TERM 113 65117 - 65141 + F 100 -15.9 -6.04953 | opp_overlap 65117, overlap 65108 ACGGGTCATAAGAAA CACCAATTTCG TCA CGAAATTGGTG TTTTTTTGTTTATAT TERM 114 65990 - 66010 + G 70 -9.7 -2.52623 | overlap 65979 65989 CTTTTGTAGCCGGGG CTACCGTTG GTT CAACGGTCG GTGTTGTCACAGGGC TERM 115 66205 - 66229 + G 84 -3.5 -5.52384 | overlap 66211 66212 ATTGTCCCGAATATT GTGGAGTCGCT ATT AGCGGTTTTGC TTTTTTTGATGACCC TERM 116 66211 - 66223 + G 78 -5.5 -4.94243 | overlap 66205 66212 CCGAATATTGTGGAG TCGCT ATT AGCGG TTTTGCTTTTTTTGA TERM 117 67608 - 67598 - g 71 -3.2 -5.04356 | TTAAAGAATTAAAAA CGAA TGA TCCG CAAGAAGTATCTGAA spoIIE 65281 - 67752 + | Stage II sporulation protein E (serine phosphatase) yabS 67819 - 68562 + | Uncharacterized protein containing a von Willebrand factor type A (vWA) domain TERM 118 68752 - 68775 + GF 85 -8.9 -4.20768 | gap 1 GAGACGATTTTCAGA GGTCC-AGGG AGTTG CCCTCGGACC TTGTTTATTAGACGT yabT 68522 - 69478 + | Serine/threonine protein kinase yacA 69556 - 70938 + | tRNA(Ile)-lysidine synthase MesJ hprT 70939 - 71505 + | Hypoxanthine-guanine phosphoribosyltransferase TERM 119 71803 - 71813 + G 81 -5.4 -5.17353 | AATTAAAAACGTATG CTGA AGG TCAG TTTTTTACTACCTAT ftsH 71592 - 73475 + | ATP-dependent Zn protease FtsH TERM 120 73477 - 73501 + F 93 -7.2 -5.44119 | opp_overlap 73477 73479 AAAAAGAAGAATAAA GGTGTCTCTT TTTAT AAGAGGCATC TTTTTTTACCGTCGG coaX 73573 - 74349 + | Pantothenate kinase type III yacC 74346 - 75245 + | Disulfide bond chaperone of the HSP33 family cysK 75306 - 76241 + | Cysteine synthetase TERM 121 76242 - 76265 + F 100 -14 -5.89827 | opp_overlap 76242 CAGTTTGAGGAATAA TTCGGCAAGA ACAT TCTTGCCGAA TTTTTTTTCGTGATT TERM 122 76265 - 76242 - f 95 -14 -3.72324 | opp_overlap 76242 CAGTTTGAGGAATAA TTCGGCAAGA ACAT TCTTGCCGAA TTTTTTTTCGTGATT pabB 76338 - 77762 + | Anthranilate/para-aminobenzoate synthase component I TERM 123 78240 - 78222 - g 73 -7.5 -4.09215 | CAGATGAAGGAGAAA TTATGGC CATTC GCCATAA AACGCTGCCGATTGA pabA 77759 - 78343 + | Anthranilate/para-aminobenzoate synthase component II pabC 78350 - 79219 + | Aminodeoxychorismate lyase sul 79216 - 80052 + | Dihydropteroate synthase folB 80015 - 80404 + | Dihydroneopterin aldolase folK 80408 - 80938 + | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Aflv_0072 80884 - 81939 + | tRNA-dihydrouridine synthase TERM 124 81969 - 81942 - f 73 -7 -4.21936 | opp_overlap 81944, overlap 81944 CGTAGAATCGTAAAA CATACTGTCAGC TCAT GCTGGCAGTATT TCTTAAAAAATAAAC TERM 125 81967 - 81944 - f 79 -9.6 -3.70689 | opp_overlap 81944, overlap 81942 TAGAATCGTAAAACA TACTGTCAGC TCAT GCTGGCAGTA TTTCTTAAAAAATAA TERM 126 81944 - 81967 + F 95 -11.8 -4.16016 | opp_overlap 81944 81942 TAGAATCGTAAAACA TACTGTCAGC TCAT GCTGGCAGTA TTTCTTAAAAAATAA TERM 127 82920 - 82910 - g 78 -5.4 -4.98255 | TTGGAACGACAAAAA TCCA ATA TGGA GAACATGAAGTAGAT lysS 82006 - 83490 + | Lysyl-tRNA synthetase (class II) TERM 128 83507 - 83533 + F 95 -11.6 -5.06414 | opp_overlap 83501 TGCAGGGAAGCTTAA CTGGGTGAGGTA CTT TTCCTCACTCAG TTTTTCTTAAAAAAA TERM 129 83924 - 83909 - f 72 -9 -3.32343 | overlap 83920 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 130 85033 - 85021 - f 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGAGGAGCCAA TERM 131 85395 - 85363 - f 74 -4.8 -4.68384 | gap 1, overlap 85366 85375 85394 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 132 85487 - 85464 - f 76 -4.5 -5.07523 | gap 1 TAGACATAAAGAAAA GCGGAGGCGA CTGTT TAGCC-CCGC TAGACATAACGTAAT TERM 133 85531 - 85547 + F 82 -8.7 -4.23486 | overlap 85528 85532 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 134 85532 - 85546 + F 75 -10 -3.13007 | overlap 85531 85528 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 135 85950 - 85931 - f 89 -12.2 -3.66803 | opp_overlap 85930 85929 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 136 86987 - 86969 - f 71 -6 -4.21194 | overlap 86973 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 137 87483 - 87470 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 138 88799 - 88776 - f 93 -11.1 -5.06414 | opp_overlap 88776 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTTGGTC TTTTTGTTTTATATG TERM 139 88776 - 88799 + F 100 -11.1 -5.58522 | opp_overlap 88776 GCCGGGCAAGAAAAA GACCAAGAC TAAATT GTCTTGGTC TTTTTGTTTTATATG ctsR 88936 - 89397 + | Transcriptional repressor of class III stress genes, CtsR mcsA 89403 - 89954 + | Modulator of heat shock repressor CtsR, McsA TERM 140 90090 - 90073 - gf 80 -3.5 -5.34055 | gap 1, opp_overlap 90073 90076, overlap 90075 90076 AGAAATATGAAAAAA TATCCGTT CCC AACGG-TA TTTACAAATGAAGAA mcsB 89902 - 91023 + | Tyrosine kinase McSB, modulator of heat shock repressor CtsR TERM 141 91200 - 91188 - g 72 -6.2 -4.28361 | GGAATTGCAGCAAAA GCGC TTATG GCGC TCGGATTAGGGCCAG TERM 142 91625 - 91609 - g 75 -5.9 -4.62392 | GAAGAAGTAAAGAAA TTCAACG CGT CATTGAA GTGTTAAGCCGTAGA clpC 91035 - 93476 + | Class III stress response-related ATPase, ClpC TERM 143 93513 - 93478 - f 83 -12.1 -3.17461 | opp_overlap 93483, overlap 93483 AGACAGTAAAATAAC GAAAACAAGGTATGC TTACAT GCATACCTTGTTTTT CATCATGAAAGGAAT TERM 144 93508 - 93483 - f 100 -12 -4.67123 | opp_overlap 93483, overlap 93478 GTAAAATAACGAAAA CAAGGTATGC TTACAT GCATACCTTG TTTTTCATCATGAAA TERM 145 93483 - 93508 + F 100 -12 -4.77036 | opp_overlap 93483 93478 GTAAAATAACGAAAA CAAGGTATGC TTACAT GCATACCTTG TTTTTCATCATGAAA radA 93535 - 94929 + | ATP-dependent serine protease, RadA Aflv_0079 94980 - 96107 + | Integral membrane protein containing PIN domain TERM 146 96526 - 96500 - g 73 -3.6 -4.91657 | opp_overlap 96506, overlap 96502 AAGCAACAAAAGAAA CGGGAGCAGC AGTGTTA GCTGTTCCTG TCAAAGATACGATGA TERM 147 96585 - 96572 - g 71 -2.3 -5.1287 | opp_overlap 96573, overlap 96573 GTCATATTGAAAAAA CGGTC GATC GATCG AGCTTGTGGGCTGTC ispD 96091 - 96813 + | 4-diphosphocytidyl-2-methyl-D-erithritol synthase TERM 148 97132 - 97121 - g 73 -5.8 -4.41206 | AATTATTGCACAAAA GCCA AAAA TGGC TCCATATATTCCAAA ispF 96810 - 97295 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 149 97749 - 97728 - g 71 -4.3 -4.87665 | gap 1, opp_overlap 97738 CGTGAGGCACAAAAA GCGGCG-GGC ATT GCGGCACCGC AATATAGTGGCAAAT gltX 97359 - 98819 + | Glutamyl-tRNA synthetase TERM 150 99099 - 99070 - f 80 -10.8 -3.3482 | opp_overlap 99071, overlap 99071 99097 GAACCGCGCAACCAA GCGTCTCTGTGT CATTGT ACACAGAGACGT TTTTTATTTGAAAAA TERM 151 99071 - 99098 + F 100 -14.3 -5.63517 | opp_overlap 99071 99070 99097 AACCGCGCAACCAAG CGTCTCTGTGT CATTGT ACACAGAGACG TTTTTTATTTGAAAA TERM 152 99098 - 99071 - f 93 -14.3 -2.60571 | opp_overlap 99071, overlap 99070 99097 AACCGCGCAACCAAG CGTCTCTGTGT CATTGT ACACAGAGACG TTTTTTATTTGAAAA TERM 153 99292 - 99316 + G 82 -5.7 -5.04987 | ATTTTATTTTTTAGC GCGCCTCATTT CGC AAATTAGTCGC TTTTTTACGGGTATT cysE 99107 - 99799 + | Serine acetyltransferase TERM 154 100119 - 100104 - g 86 -6.8 -5.00616 | CTCGGTTGCAAAAAA GCGGAC GTCC ATCCGC GTGTCACCGAAAACA cysS 99780 - 101177 + | Cysteinyl-tRNA synthetase TERM 155 101216 - 101204 - g 71 -4.9 -4.63486 | ATTTGTTTAACAAAA TGAAA GAT TTTCA GCAGTTAAACGGTTT TERM 156 101248 - 101284 + G 100 -14 -3.36492 | gap 2 ACGTTAGCCTACATT GGTGATGCCGTATACGAA TTA TTCGTA--CGGCATCACC TTCTGACCTTAGGAA TERM 157 101458 - 101443 - g 74 -6.8 -4.27316 | GGTCGTAATGCAAAA TCAGGG AGTA CCCCGA AAAATACAGATGTAC Aflv_0085 101182 - 101607 + | Ribonuclease III family protein yacO 101607 - 102347 + | rRNA methylase yacP 102340 - 102858 + | PIN domain containing protein sigH 102905 - 103576 + | RNA polymerase sigma-30 factor, sigH rpmGB 103640 - 103789 + | Ribosomal protein L33 secE 103821 - 104003 + | Preprotein translocase subunit SecE TERM 158 104052 - 104063 + F 93 -7.2 -5.48213 | opp_overlap 104052 104051 AAACAAGAAATAAAG CCCG GTAA CGGG TTTTTATTTTGCCTA nusG 104123 - 104656 + | Transcription antiterminator NusG rplK 104739 - 105233 + | Ribosomal protein L11 TERM 159 105253 - 105286 + F 77 -8.2 -4.24342 | opp_overlap 105253 GATCTGGCTGGAGAA GGTTGCGGAAGCGA ACTATA TAGTTTTCGCAACC TTTATTCGTGGGAGG rplA 105337 - 106038 + | Ribosomal protein L1 TERM 160 106185 - 106173 - f 75 -7.7 -4.10188 | opp_overlap 106173 GAGACTCATAAATAA GTGCA TCT TGCAC TTTTCGGGGGCCTCC TERM 161 106173 - 106185 + F 75 -7.7 -4.08216 | opp_overlap 106173 GAGACTCATAAATAA GTGCA TCT TGCAC TTTTCGGGGGCCTCC TERM 162 106196 - 106221 + F 100 -13.4 -5.26875 | TGCACTTTTCGGGGG CCTCCATGTC TGCGTT GACATGGAGG TTTTTTGATTGAACG TERM 163 106349 - 106365 + G 76 -9.5 -3.49924 | opp_overlap 106349 106353, overlap 106350 106353 CTTCGCGCGAGCAAA TCAACGA TCA TCGTTGA TTATCGTGGTTTAAA TERM 164 106365 - 106349 - g 78 -9.5 -3.72576 | opp_overlap 106349 106350 106353, overlap 106353 CTTCGCGCGAGCAAA TCAACGA TCA TCGTTGA TTATCGTGGTTTAAA rplJ 106226 - 106780 + | Ribosomal protein L10 rplL 106826 - 107191 + | Ribosomal protein L7/L12 TERM 165 107204 - 107223 + F 95 -6.4 -5.69068 | gap 1, opp_overlap 107204 TAATGATATAAAAAA GCTCGCTCA AAG TG-GCGGGC TTTTTTGTGTTTTTA TERM 166 107223 - 107204 - f 82 -4.2 -5.42131 | gap 1, opp_overlap 107204 TAATGATATAAAAAA GCTCGCTCA AAG TG-GCGGGC TTTTTTGTGTTTTTA rsmC 107270 - 107878 + | 16S RNA G1207 methylase RsmC TERM 167 108011 - 108031 + F 72 -3.4 -5.16969 | gap 1, opp_overlap 108025, overlap 108025 AATAGGTCAAACATG TGGTTTTCT TATA AGAAA-CCA TTTCTTTTTTGTCTG TERM 168 108025 - 108035 + F 82 -4 -5.39721 | opp_overlap 108025, overlap 108011 GTGGTTTTCTTATAA GAAA CCA TTTC TTTTTTGTCTGATGA TERM 169 110846 - 110834 - g 91 -7.7 -4.8667 | TACATTGTACAAAAA CGGAA AAT TTCCG AAGGTGACAAAATGG TERM 170 110871 - 110859 - g 70 -5.5 -4.42788 | CCGAAGGTGACAAAA TGGCA GGA CGCCA TGGAAATAAAGGGGT rpoB 108077 - 111646 + | DNA-directed RNA polymerase beta subunit TERM 171 111966 - 111954 - g 76 -7.7 -4.08767 | GTTACGCGTGCAAAA GTTCG TCG CGAAC GCATGGGTCATATTG TERM 172 112176 - 112160 - g 72 -7.9 -3.80746 | overlap 112158 TTCTGAAAAAGAATA TCGCGCG TAT CGCGAGA AGTACGGAAATTCAT TERM 173 112362 - 112374 + G 79 -7.7 -4.35581 | opp_overlap 112361 AACTCCGGTAACGAC CCATC TTG GATGG TTTTAGATGTTTTAC TERM 174 114947 - 114927 - g 71 -6.7 -4.10453 | CAAATGCTTCGAAAA GTGCGCGTC ATT GACGCGGGC GATACAGACTTGTTG rpoC 111696 - 115295 + | DNA-directed RNA polymerase beta' subunit Aflv_0099 115421 - 115669 + | Ribosomal protein HS6-type TERM 175 115675 - 115698 + F 90 -9 -4.89063 | opp_overlap 115675 115674, overlap 115667 115692 TATTCGTTAAAAACT GTTTTTGTGG GTTA CTACAAAAAC TTTGTTTTTGCATAA rpsL 115729 - 116193 + | Ribosomal protein S12 rpsG 116238 - 116708 + | Ribosomal protein S7 fusA 116843 - 118921 + | Translation elongation factor G, EF-G TERM 176 118962 - 119003 + F 73 -8.7 -3.74975 | opp_overlap 118962 118964, overlap 118963 118977 TAAATACTTATGTAA GACTTGGAAGTGGACGTGC CTGT GCACTTTCACTTCCGAGCA TTCTATATTCTATAC TERM 177 118963 - 119002 + F 81 -12.2 -2.84262 | opp_overlap 118962 118964, overlap 118962 118977 AAATACTTATGTAAG ACTTGGAAGTGGACGTGC CTGT GCACTTTCACTTCCGAGC ATTCTATATTCTATA TERM 178 119001 - 118964 - f 82 -11.3 -3.10622 | opp_overlap 118963 118962 118977, overlap 118962 AATACTTATGTAAGA CTTGGAAGTGGACGTGC CTGT GCACTTTCACTTCCGAG CATTCTATATTCTAT tufA 119051 - 120238 + | Translation elongation factor Tu, EF-Tu TERM 179 120244 - 120274 + F 100 -12.7 -5.13741 | opp_overlap 120228 120247, overlap 120247 CATCGAGTAATCGAT AAAGTGGTCTAGC TTGCT GCTAGACCACTTA TTTTTGTTCCATTGA TERM 180 120271 - 120247 - f 100 -14.4 -3.98826 | opp_overlap 120244 120247 CGAGTAATCGATAAA GTGGTCTAGC TTGCT GCTAGACCAC TTATTTTTGTTCCAT TERM 181 120247 - 120271 + F 100 -14.4 -4.64495 | opp_overlap 120247, overlap 120244 CGAGTAATCGATAAA GTGGTCTAGC TTGCT GCTAGACCAC TTATTTTTGTTCCAT rpsJ 120474 - 120821 + | Ribosomal protein S10 rplC 120845 - 121471 + | Ribosomal protein L3 rplD 121499 - 122122 + | Ribosomal protein L4 rplW 122122 - 122409 + | Ribosomal protein L23 TERM 182 123244 - 123228 - g 79 -3.1 -5.29445 | GCGTAAGAAGAAAAA TAAATCT GAT AAATTTA TCGTACGTCGTCGTA rplB 122431 - 123267 + | Ribosomal protein L2 TERM 183 123312 - 123265 - f 71 -4 -5.00616 | overlap 123268 CGTCGTCGTAAAAAA TAACGGGGTTGAGCTACGGTTC AAAA GAACCGTAGAGCAATCACGAAA GGAGGTTCACTTATG TERM 184 123309 - 123268 - f 91 -10.1 -4.61482 | overlap 123265 CGTCGTAAAAAATAA CGGGGTTGAGCTACGGTTC AAAA GAACCGTAGAGCAATCACG AAAGGAGGTTCACTT TERM 185 123496 - 123471 - g 71 -9.9 -2.6914 | gap 1, overlap 123470 CATCGGTCACACAAT CGCTGTTTACGA TGG TCGTAAACA-CG TTCCAGTTTACATCA rpsS 123325 - 123603 + | Ribosomal protein S19 rplV 123624 - 123965 + | Ribosomal protein L22 rpsC 123969 - 124625 + | Ribosomal protein S3 rplP 124628 - 125062 + | Ribosomal protein L16 rpmC 125037 - 125252 + | Ribosomal protein L29 rpsQ 125278 - 125541 + | Ribosomal protein S17 rplN 125590 - 125958 + | Ribosomal protein L14 TERM 186 126279 - 126265 - g 74 -4.2 -5.0538 | opp_overlap 126265, overlap 126266 GTTGACGGTAAAAAA GTTCGC TAT GCGAAA CGTTCTGGTGAAATT TERM 187 126278 - 126266 - g 70 -7.7 -3.62746 | opp_overlap 126265, overlap 126265 TTGACGGTAAAAAAG TTCGC TAT GCGAA ACGTTCTGGTGAAAT rplX 125995 - 126306 + | Ribosomal protein L24 rplE 126336 - 126875 + | Ribosomal protein L5 rpsN 126910 - 127095 + | Ribosomal protein S14 rpsH 127129 - 127527 + | Ribosomal protein S8 rplF 127557 - 128096 + | Ribosomal protein L6 rplR 128111 - 128491 + | Ribosomal protein L18 rpsE 128511 - 129011 + | Ribosomal protein S5 rpmD 129023 - 129214 + | Ribosomal protein L30 TERM 188 129361 - 129345 - g 70 -5.8 -4.26792 | gap 1 ACACAAAGGGCAAAA CGCTCGC TCTG GCG-GCG GCGTACGCATCGGCT rplO 129229 - 129669 + | Ribosomal protein L15 TERM 189 130525 - 130535 + G 73 -5.4 -4.62336 | TTATTACTCCACCGA CGAT TGC ATCG TTTTTCGGCTCGAAT secY 129669 - 130961 + | Preprotein translocase subunit SecY TERM 190 130995 - 130965 - f 89 -6.8 -5.33405 | TTTATTAAATAAAAA GAGGTGTTGGGAAT TTT ATTCCCTCTACCTC ATACAGAGCTGAGGG TERM 191 131180 - 131192 + G 70 -7.7 -3.63515 | GCGAAGTCGTACATG GATCG TGG CGATC TTGTTCCAGATGAAG adk 131018 - 131671 + | Adenylate kinase map 131671 - 132417 + | Methionine aminopeptidase TERM 192 132514 - 132499 - f 72 -3.2 -5.05782 | ACTCATTTCAAAAAA GAAGGG AGAG CCGTTC AATGGCGAAAGACGA infA 132516 - 132734 + | Translation initiation factor 1 (IF-1) rpmJ 132765 - 132878 + | Ribosomal protein L36 rpsM 132901 - 133266 + | Ribosomal protein S13 rpsK 133292 - 133681 + | Ribosomal protein S11 rpoA 133850 - 134794 + | DNA-directed RNA polymerase alpha subunit TERM 193 134788 - 134817 + F 74 -6.5 -4.4261 | opp_overlap 134786 134788 134791 AAGCTTACGTAAAGA TGACTAGTTAAGC GTTT GGTTAACTAGGCA TTTTCATGTTAAAAG rplQ 134855 - 135217 + | Ribosomal protein L17 TERM 194 135886 - 135859 - gf 71 -2 -5.09426 | opp_overlap 135871, overlap 135864 CCGAATGGCAAAAAA GAAGTGCTTCAA GTGA TCCAATCACTTC GTTGCGAACACGATA Aflv_0134 135331 - 136185 + | ABC-type cobalt transport system, ATPase component Aflv_0135 136143 - 137012 + | ABC-type cobalt transport system, ATPase component Aflv_0136 137009 - 137806 + | ABC-type cobalt transport system, permease component TERM 195 137929 - 137888 - g 70 -7.4 -3.78904 | gap 1, opp_overlap 137893, overlap 137893 TACCAAATTCAACAA CAAAAGCGAACGGTACAAG GAGAG CTTG-AGCGTGCGCTTTCG ATCATTCATAAGGGG TERM 196 137924 - 137893 - g 73 -3.7 -4.91987 | gap 1, opp_overlap 137893, overlap 137888 AATTCAACAACAAAA GCGAACGGTACAAG GAGAG CTTG-AGCGTGCGC TTTCGATCATTCATA TERM 197 138195 - 138184 - g 74 -4.4 -5.02502 | GATAGGAGAGAAAAA CGTA TTTT TACG CCATTACGTCTATCA truA 137822 - 138562 + | Pseudouridylate synthase I TERM 198 139139 - 139117 - g 82 -5.7 -4.99861 | gap 1, opp_overlap 139124, overlap 139120 CATCAAGCACAAAAA CCA-GAAGTT TACG AACTTCGTGG ATAATTGATTAAAGG rplM 138709 - 139143 + | Ribosomal protein L13 rpsI 139166 - 139558 + | Ribosomal protein S9 TERM 199 139588 - 139567 - f 100 -13.1 -4.74504 | opp_overlap 139567 ACGTTAATTCAAAAA TCTCGGCAA TTGT TTGCCGAGA TTTTTTTGTATGTTC TERM 200 139567 - 139588 + F 100 -13.1 -5.80248 | opp_overlap 139567 ACGTTAATTCAAAAA TCTCGGCAA TTGT TTGCCGAGA TTTTTTTGTATGTTC ybaK 139598 - 140050 + | hypothetical protein TERM 201 140660 - 140647 - g 74 -4.5 -4.76041 | overlap 140648 TATATTTATTAAAAA CGGCT AAAA AGCCA GGGGCTTTAGTTGAA cwlD 140106 - 140804 + | N-acetylmuramoyl-L-alanine amidase TERM 202 140789 - 140814 + F 93 -5.6 -5.60993 | gap 1, opp_overlap 140788, overlap 140792 CGTATCAAATGAACG TG-ATCCTTCT GAGTG AGAAGGATTCA TTTTTTTATGCAGAA TERM 203 140792 - 140810 + F 73 -7.5 -4.08806 | opp_overlap 140788, overlap 140789 ATCAAATGAACGTGA TCCTTCT GAGTG AGAAGGA TTCATTTTTTTATGC TERM 204 141098 - 141085 - g 76 -8.1 -4.14392 | opp_overlap 141085, overlap 141087 GTGCAACGTTTAAAA GACGC AGGA GCGTC TTCTGTCGGGCTTCG mrp 140884 - 141891 + | Mrp protein, an ATPase involved in chromosome partitioning TERM 205 141889 - 141910 + T 80 -11.6 -2.9003 | opp_overlap 141886, overlap 141887 141884 ATTGCGAAATTACGG TGAGGGGC TTAGTC GCCCCTCA TGCTGTTTGATCTTC gerD 142510 - 141908 - | Spore germination protein GerD kbaA 142636 - 143232 + | Integral membrane protein, activator of sporulation histidine kinase KinB TERM 206 143221 - 143265 + T 90 -8.8 -4.9725 | opp_overlap 143230 143235, overlap 143226 143230 143235 ACATTGCATCGACTT TTGCGGAAATAAAATGAGGC TTGCT GCCTCATTTTATTTCTTTAC TTTTTATATGAGCGT TERM 207 143226 - 143260 + T 100 -17.5 -4.40526 | opp_overlap 143230 143235, overlap 143221 143230 143235 GCATCGACTTTTGCG GAAATAAAATGAGGC TTGCT GCCTCATTTTATTTC TTTACTTTTTATATG TERM 208 143256 - 143230 - T 90 -12.5 -3.53444 | opp_overlap 143226 143221 143230 143235, overlap 143235 CGACTTTTGCGGAAA TAAAATGAGGC TTGCT GCCTCATTTTA TTTCTTTACTTTTTA TERM 209 143230 - 143256 + T 100 -12.5 -4.71307 | opp_overlap 143230 143235, overlap 143226 143221 143235 CGACTTTTGCGGAAA TAAAATGAGGC TTGCT GCCTCATTTTA TTTCTTTACTTTTTA TERM 210 143235 - 143251 + T 91 -8 -5.20222 | opp_overlap 143230 143235, overlap 143230 143226 143221 TTTGCGGAAATAAAA TGAGGC TTGCT GCCTCA TTTTATTTCTTTACT TERM 211 143251 - 143235 - T 86 -8 -4.86731 | opp_overlap 143235 143230 143226 143221, overlap 143230 TTTGCGGAAATAAAA TGAGGC TTGCT GCCTCA TTTTATTTCTTTACT Aflv_0145 144010 - 143249 - | Predicted xylanase/chitin deacetylase TERM 212 143567 - 143593 + g 75 -3.1 -5.15969 | overlap 143568 GCGTAGGAAAGGGGT ATGTTTAATGC CTAAC GTATTAAACAC TTTTTTAGCTTGAGC TERM 213 143828 - 143843 + g 82 -3.3 -5.46706 | ACTAATATCAAATGT CAATG CGAGCT CATTG TTTTTATTTTCGACT TERM 214 144443 - 144428 - H 72 -9 -3.32343 | overlap 144439 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 215 145553 - 145541 - H 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 216 145915 - 145883 - H 74 -4.8 -4.68384 | gap 1, overlap 145886 145895 145914 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 217 146170 - 146186 + H 82 -8.7 -4.23486 | overlap 146167 146171 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 218 146171 - 146185 + H 75 -10 -3.13007 | overlap 146170 146167 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 219 146590 - 146571 - H 89 -12.2 -3.66803 | opp_overlap 146570 146569 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 220 147627 - 147609 - H 71 -6 -4.21194 | overlap 147613 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 221 148123 - 148110 - H 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 222 149305 - 149271 - H 70 -7.7 -3.72453 | gap 1, opp_overlap 149272, overlap 149264 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGGTTCGAGG TERM 223 149428 - 149413 - H 70 -9 -3.1506 | AAAGCTTTTGACGAA GACGTG TGTG CACGTC GAACGGAAAAAGCGC TERM 224 150654 - 150634 - H 75 -9.7 -3.31263 | overlap 150636 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAGT TERM 225 150652 - 150636 - H 79 -10.9 -3.22475 | overlap 150634 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 226 150768 - 150786 + H 100 -11.8 -5.90231 | opp_overlap 150768 GGCTCCATACGAAAA CCTTAGGT ATT ACCTAAGG TTTTTTTCTGTTTGT TERM 227 150786 - 150768 - H 95 -11.8 -4.34402 | opp_overlap 150768 GGCTCCATACGAAAA CCTTAGGT ATT ACCTAAGG TTTTTTTCTGTTTGT TERM 228 151065 - 151043 - g 72 -7.6 -3.74792 | TAGGAGATATTCAAA TTGGTCGCGC TGA GCGCGTTCAA GATGTGACAAATCCA TERM 229 151750 - 151736 - g 75 -5.6 -4.66318 | opp_overlap 151736 151741 ATGAGCGCAATAAAA CAGCTG CAA CCGCTG TCGCTTTAATGGGAT rocF 150895 - 151791 + | Arginase TERM 230 151789 - 151816 + F 100 -13.6 -6.60575 | gap 1, opp_overlap 151794, overlap 151792 GGTGAGAAGCTTGTA TG-AGAGGTGGCA TGA TGCCACCTCTTCA TTTTTTTTTTTAAAT TERM 231 151792 - 151812 + F 100 -15.5 -4.28844 | opp_overlap 151794, overlap 151789 GAGAAGCTTGTATGA GAGGTGGCA TGA TGCCACCTC TTCATTTTTTTTTTT TERM 232 151810 - 151794 - f 83 -12.3 -2.79133 | opp_overlap 151792 151789 GAAGCTTGTATGAGA GGTGGCA TGA TGCCACC TCTTCATTTTTTTTT sigW 151917 - 152480 + | DNA-directed RNA polymerase specialized sigma subunit rsiW 152491 - 153114 + | Membrane-anchored regulator of SigW (anti-sigma factor) TERM 233 153114 - 153131 + F 85 -7 -5.1287 | opp_overlap 153112 153114 AACATTAACGAAATA GCCATC CATATT GATGGC TTTTTTACATGTGAG Aflv_0149 153124 - 153999 + | hypothetical protein TERM 234 154967 - 154950 - g 73 -8.5 -3.70836 | overlap 154948 AACAAGAAAAAGAGA GAACGTT TTAT AACGTTC CAATTGAAATCATTG Aflv_0150 153992 - 155224 + | hypothetical protein TERM 235 156091 - 156077 - g 76 -7.8 -4.07678 | overlap 156058 GCTTAAAACATCAAA CGGTCG TCT CAACCG TCATGAGCAACCTCG TERM 236 156130 - 156118 - g 78 -9.1 -3.85698 | CTCGGCTTTTATAAA GCGCT TGA AGCGC AAGGAATCAAAAGCG TERM 237 156167 - 156152 - g 77 -8.2 -3.97406 | opp_overlap 156152, overlap 156143 TCAAAAGCGTACAAA CGGCCG TTGG CGACCG TTATGTCGTCGAAGA Aflv_0151 155242 - 156585 + | Phosphomannomutase TERM 238 156644 - 156602 - f 72 -8.7 -3.55761 | opp_overlap 156605, overlap 156605 156607 156615 CATGTATTCGGTAAA CGATATGCATAAATGGAAC GGTTT ATTCCATTTATGCATATTT TGTTTACACAGGGGT TERM 239 156641 - 156605 - f 95 -14.8 -2.91144 | opp_overlap 156605, overlap 156602 156607 156615 GTATTCGGTAAACGA TATGCATAAATGGAAC GGTTT ATTCCATTTATGCATA TTTTGTTTACACAGG TERM 240 156605 - 156641 + F 100 -14.1 -4.86731 | opp_overlap 156602 156605 156607 156615 GTATTCGGTAAACGA TATGCATAAATGGAA CGGTTTA TTCCATTTATGCATA TTTTGTTTACACAGG TERM 241 156639 - 156607 - f 91 -13 -3.00704 | opp_overlap 156605, overlap 156605 156602 156615 ATTCGGTAAACGATA TGCATAAATGGAAC GGTTT ATTCCATTTATGCA TATTTTGTTTACACA TERM 242 156832 - 156860 + F 76 -7.4 -4.20367 | GTGTTCGGCGGATGC CTCCCGGCTG ATGCGATGA CAGCCGCGAG TTCTTTCTTAAAACA TERM 243 156891 - 156874 - f 79 -8.5 -4.07687 | AGTTCTTTCTTAAAA CAAAGAG GCGA CTCTTTG CACAAAGGAAAGAAC TERM 244 156957 - 156933 - f 82 -11.5 -3.15292 | opp_overlap 156933 156933 156954 ACAAATATTATCCAA GGGGCAAGA GCCCCTT TCTTGCCCC TATCATTAGGGAGGA TERM 245 156933 - 156946 + F 89 -9.5 -4.17556 | opp_overlap 156933, overlap 156933 ACAAATATTATCCAA GGGGC AAGA GCCCC TTTCTTGCCCCTATC TERM 246 156933 - 156957 + F 81 -12.2 -2.90075 | opp_overlap 156933, overlap 156933 156954 ACAAATATTATCCAA GGGGCAAGAG CCCCT TTCTTGCCCC TATCATTAGGGAGGA TERM 247 157408 - 157423 + G 73 -5.4 -4.67038 | opp_overlap 157408 157421, overlap 157402 157421 TTAACGGTAGAAGAA GCGTTT CGTA AGACGC TTTTGCTTTTGAAAG TERM 248 157521 - 157505 - g 75 -2.1 -5.26119 | overlap 157500 157506 CGGCGAAAAACAAAA GCCCGCT TTT AGCTGGA TTAGGCGAAGGGTTT glmS 156979 - 158781 + | L-glutamine-D-fructose-6-phosphate amidotransferase TERM 249 158797 - 158837 + T 91 -6.3 -5.44198 | gap 2, opp_overlap 158797 AGCTTAGAAGAAAAA CCACACGCCACTGATTACG ATGTA TGTAATC-G-GACGTGTGG TTTTTATTATTTCTT TERM 250 158837 - 158797 - T 91 -7.8 -5.19328 | gap 2, opp_overlap 158797 AGCTTAGAAGAAAAA CCACACGCCACTGATTAC GATGTAT GTAATC-G-GACGTGTGG TTTTTATTATTTCTT Aflv_0153 159961 - 159266 - | Uncharacterized transmembrane protein Aflv_0154 160177 - 160737 + | Transposase Aflv_0155 160719 - 161237 + | Transposase Aflv_0156 162979 - 162461 - | Transposase Aflv_0157 163545 - 162991 - | Transposase TERM 251 163795 - 163773 - R 100 -16.4 -5.66229 | ACCAATAATAAAAAA GCTTGTCGAC TTT GTCGACAAGC TGAAGATTCACAGAT Aflv_0158 164435 - 163824 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase Aflv_0159 166582 - 165113 - | Transposase IS66 family TERM 252 166645 - 166613 - H 100 -8.6 -5.72053 | gap 1, opp_overlap 166613 CAAGGAAAGAAAAAA CTATTCAGCTCACTT TATG ATGTG-GCTGAATAG TTACTACCATTTTAA TERM 253 166835 - 166851 + H 77 -8.1 -4.29738 | AAGTTAAAGCCTAGG TCCTTTT AAA AAAAGGA TTTTACTAGGTCTAG TERM 254 167171 - 167190 + H 73 -6.6 -4.20106 | opp_overlap 167170 167164 167171 TATAAATATCAAAAT TTATGTAT GTTT ATACATAA TTTTAAGTAAGGTTT acpS 167235 - 167588 + | Holo-acyl carrier protein synthase:Phosphopantethiene-protein transferase TERM 255 168258 - 168248 - f 82 -4 -5.47159 | GGGAAGAAATAAAAA TTTC CTC GAAA TAGAACAAGCCGGAA TERM 256 169349 - 169331 - f 90 -7.4 -5.18866 | opp_overlap 169334 169335 TGTAAATAAACAAAA GAAGGGGA TTC TCCCTTTC TACACATAAAACTGA TERM 257 169790 - 169831 + F 77 -9.5 -3.48288 | opp_overlap 169800, overlap 169792 169794 169800 GTGTCTTTTCAATGG TTTTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTATG TTGTGGTGTAAATTA TERM 258 169792 - 169829 + F 100 -14.3 -3.30918 | opp_overlap 169800, overlap 169790 169794 169800 GTCTTTTCAATGGTT TTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTA TGTTGTGGTGTAAAT TERM 259 169794 - 169827 + F 100 -16.9 -3.2178 | opp_overlap 169800, overlap 169792 169790 169800 CTTTTCAATGGTTTT CTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAG TATGTTGTGGTGTAA TERM 260 169800 - 169821 + F 73 -8.7 -3.77846 | opp_overlap 169800, overlap 169794 169792 169790 AATGGTTTTCTGAAA GTGGCTGGC AGAT GTCAGCTAC TTTCAGTATGTTGTG Aflv_0161 170092 - 170736 + | Cell wall-associated Rhs family protein precursor Aflv_0162 170751 - 171035 + | hypothetical protein TERM 261 171087 - 171061 - f 90 -9.5 -4.39426 | opp_overlap 171061 TATATTGTTACAAAA GCCTTAGGAGA TAAAT TCTCTTAAGGC TTTTTACATGGAGGA TERM 262 171061 - 171087 + F 95 -11.7 -4.65895 | opp_overlap 171061 TATATTGTTACAAAA GCCTTAGGAGA TAAAT TCTCTTAAGGC TTTTTACATGGAGGA TERM 263 171750 - 171772 + G 100 -13.6 -5.60556 | opp_overlap 171750 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTATT TERM 264 171772 - 171750 - g 100 -13.6 -4.59109 | opp_overlap 171750 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTATT TERM 265 172474 - 172486 + G 80 -4.8 -5.1166 | overlap 172471 CTATCTGTAAAGCAT GACC CTCGT GGTC TTTTTGCTTTTCATG Aflv_0163 171742 - 173187 + | Transposase TERM 266 173235 - 173201 - f 95 -8.8 -5.51078 | opp_overlap 173209, overlap 173203 AAAACAAAAAGAAAA GAGAAAAAGTTCAC GGGAGAT GTGAACTTTTTCTT GACGTCTCACTTTTT TERM 267 173233 - 173203 - f 93 -11.4 -4.3115 | opp_overlap 173209, overlap 173201 AACAAAAAGAAAAGA GAAAAAGTTCAC GGGAGAT GTGAACTTTTTC TTGACGTCTCACTTT TERM 268 173209 - 173227 + F 79 -5.3 -5.09204 | opp_overlap 173203 173201 AAGAAAAGAGAAAAA GTTCACG GGAGA TGTGAAC TTTTTCTTGACGTCT TERM 269 173367 - 173396 + F 100 -12.3 -5.25803 | opp_overlap 173367 173374, overlap 173374 TTGTTTAACGGAAGA TTGAAAACGGGGC AATC GCTCCGTTTTTAA TTTTTTATAGGCGTT TERM 270 173374 - 173389 + F 91 -8.2 -5.27769 | opp_overlap 173374 173367, overlap 173367 ACGGAAGATTGAAAA CGGGGC AATC GCTCCG TTTTTAATTTTTTAT TERM 271 173389 - 173374 - f 71 -6 -4.28656 | opp_overlap 173367 173374, overlap 173367 ACGGAAGATTGAAAA CGGGGC AATC GCTCCG TTTTTAATTTTTTAT Aflv_0164 173533 - 175209 + | Predicted transcriptional regulator containing an HTH domain and diverged ATP-binding domain (Schlafen-like) TERM 272 175387 - 175361 - f 80 -10.2 -3.67296 | opp_overlap 175361 TAGGATTTAGTTAAA GACATCGGTTCA ATT TAAACCGGTGTC TTTTTAATATTTACC TERM 273 175361 - 175387 + F 93 -10.2 -4.93696 | opp_overlap 175361 TAGGATTTAGTTAAA GACATCGGTTCA ATT TAAACCGGTGTC TTTTTAATATTTACC TERM 274 175802 - 175859 + F 100 -16 -3.77157 | gap 2, opp_overlap 175805, overlap 175807 ATATATCAATTTTAA TTAT-TA-CCCGTGGTGCTAGTTGAGCG CTAA CGCTCAACTAGCACCACAGACTATATAA TATCTTTTTTCTTCC TERM 275 175854 - 175805 - f 100 -23.1 -2.75957 | opp_overlap 175802 175807 TATCAATTTTAATTA TTACCCGTGGTGCTAGTTGAGCG CTAA CGCTCAACTAGCACCACAGACTA TATAATATCTTTTTT TERM 276 175807 - 175852 + F 100 -19.1 -3.02677 | opp_overlap 175805, overlap 175802 TCAATTTTAATTATT ACCCGTGGTGCTAGTTGAGCG CTAA CGCTCAACTAGCACCACAGAC TATATAATATCTTTT TERM 277 176129 - 176170 + F 75 -9.5 -3.3452 | opp_overlap 176139, overlap 176131 176133 176139 GTGTCTTTTCAATGG TTTTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTATG TTGTGGGCTAATGTC TERM 278 176131 - 176168 + F 95 -14.3 -3.23869 | opp_overlap 176139, overlap 176129 176133 176139 GTCTTTTCAATGGTT TTCTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAGTA TGTTGTGGGCTAATG TERM 279 176133 - 176166 + F 100 -16.9 -3.18118 | opp_overlap 176139, overlap 176131 176129 176139 CTTTTCAATGGTTTT CTGAAAGTGGCTGGC AGAT GTCAGCTACTTTCAG TATGTTGTGGGCTAA TERM 280 176139 - 176160 + F 73 -8.7 -3.77846 | opp_overlap 176139, overlap 176133 176131 176129 AATGGTTTTCTGAAA GTGGCTGGC AGAT GTCAGCTAC TTTCAGTATGTTGTG TERM 281 176607 - 176643 + G 72 -9.5 -3.10597 | opp_overlap 176612 176617, overlap 176606 CAATTTGGAAGTTTA ACTGACGGAAGCAAG CTCTTGT CTTGCTTCCGTCACA CTTTTCCGTGACAAA TERM 282 176638 - 176612 - g 86 -12.4 -2.55074 | opp_overlap 176607 176606, overlap 176617 TGGAAGTTTAACTGA CGGAAGCAAG CTCTTGT CTTGCTTCCG TCACACTTTTCCGTG Aflv_0165 176376 - 176654 + | Transposase TERM 283 176825 - 176849 + F 91 -13.1 -3.17723 | opp_overlap 176827, overlap 176813 TATCATTTTTTTTAA GATGTATATAC TAT GTATATACATC TTAAGTTAAGGGTGA TERM 284 176847 - 176827 - f 72 -9.9 -3.02144 | opp_overlap 176813 176825 TCATTTTTTTTAAGA TGTATATAC TAT GTATATACA TCTTAAGTTAAGGGT mazE 176869 - 177177 + | Toxin-antiotoxin addiction module antitoxin component MazE mazF 177177 - 177563 + | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse) TERM 285 178158 - 178134 - f 79 -5.7 -4.89852 | opp_overlap 178134 TGATACCCACAAAAA GAGCCGC TTTGTTTTATG GCGGCTC TTTGTTATGAAGGGA TERM 286 178134 - 178158 + F 82 -8.5 -4.30719 | opp_overlap 178134 TGATACCCACAAAAA GAGCCGCTTTG TTT TATGGCGGCTC TTTGTTATGAAGGGA TERM 287 178300 - 178285 - f 70 -3.2 -4.93296 | TCATCATTATAAAAA TACGCC TTGA GTCGTA GTTGAAAATATAGCT TERM 288 178520 - 178510 - gf 73 -8.2 -3.5771 | opp_overlap 178510 178509 AAAAAGTTTTTCAAA GCCG ATT CGGC GTTTGGCAAAATCGT Aflv_0168 178336 - 178728 + | hypothetical protein pspA 178701 - 179366 + | Phage shock protein A TERM 289 180055 - 180037 - g 87 -5.2 -5.5112 | opp_overlap 180040, overlap 180040 TGGATCAACAAAAAA CGACCGAC TAC GTCAGTTG GGTAGTATTGCTTGC TERM 290 180085 - 180098 + G 71 -2.3 -5.14563 | CGCTCATGATTTTGG CGCTA GAAA TTGCG TTTTTTCATCCAGGC Aflv_0170 179970 - 180746 + | Predicted membrane protein yvqE 180743 - 181750 + | Signal transduction histidine kinase TERM 291 182193 - 182172 - g 70 -9.5 -2.7961 | overlap 182169 AAATGATGAATAGTA TGAGAAAGC CGTC GCTTCCTCA TGAACAACTAACGAG yvqC 181763 - 182389 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 292 182391 - 182409 + F 93 -2.3 -6.28401 | overlap 182392 GGTTGGTCAAATAAC GCTCGCT TTTAT GGCGAGA TTTTTTTATTTTTTC TERM 293 182392 - 182408 + F 70 -5.8 -4.3155 | overlap 182391 GTTGGTCAAATAACG CTCGCT TTTAT GGCGAG ATTTTTTTATTTTTT TERM 294 182431 - 182449 + F 91 -11.8 -3.97834 | TATTTTTTCGCTTTA CATTGACG TTA CGTCAATG TTTATAGTGAAATTG mta 182447 - 183241 + | Transcriptional regulator (MerR family) TERM 295 183260 - 183239 - f 76 -4.3 -5.14477 | opp_overlap 183241 183259, overlap 183241 TATACAGGTAAAAAA TAGGCAGGC AGCA GCCTGTCTT TTTACATTGTAAAAG TERM 296 183241 - 183258 + F 89 -9.1 -4.78149 | opp_overlap 183239 183241 TACAGGTAAAAAATA GGCAGGC AGCA GCCTGTC TTTTTACATTGTAAA TERM 297 183258 - 183241 - f 73 -6.9 -4.19215 | opp_overlap 183241, overlap 183239 TACAGGTAAAAAATA GGCAGGC AGCA GCCTGTC TTTTTACATTGTAAA TERM 298 183723 - 183711 - g 77 -6.3 -4.64657 | TTAAAGCCGCAAAAA CTTCA AAT TGAAG GAGCAGAAAAGTTTG TERM 299 183908 - 183944 + G 71 -4.5 -4.67353 | AAAAGGACATGAGGC GCAAGTGACGCAATTAT TAA ATAGTTCTGCCATTTGC TTTTTCCATACGTCC Aflv_0174 183324 - 184379 + | Thioredoxin reductase TERM 300 184433 - 184394 - f 84 -10.2 -3.86524 | opp_overlap 184384 184397 ATAGCCGTGTATAAA CTCGTTTGTTTTAACACA AACT TTCGGTAAAACAAACGAG GTGAATATTTTGCTC TERM 301 184714 - 184703 - g 74 -4.4 -4.93365 | opp_overlap 184703, overlap 184697 GGCGATAAGCAAAAA GGAA GGAT TTCC TTATCGATTGCATGC Aflv_0175 184434 - 185147 + | hypothetical protein TERM 302 185162 - 185131 - T 76 -6.6 -4.39166 | opp_overlap 185135, overlap 185135 GCCCACATATGAAAA CGAAGCTAGCGC GATAAACT GCGCTAGCTTTA TTTCACTTATTGGTG TERM 303 185158 - 185135 - T 79 -9.6 -3.74461 | opp_overlap 185135, overlap 185131 ACATATGAAAACGAA GCTAGCGC GATAAACT GCGCTAGC TTTATTTCACTTATT TERM 304 185135 - 185158 + T 91 -10.3 -4.52669 | opp_overlap 185135 185131 ACATATGAAAACGAA GCTAGCGCG ATAAAC TGCGCTAGC TTTATTTCACTTATT TERM 305 185179 - 185192 + T 76 -2.4 -5.43514 | TTCACTTATTGGTGA GAAG AAATGA CTTC TTTTTTCGTTGTTTT cstA 186788 - 185169 - | Carbon starvation membrane protein TERM 306 185990 - 185977 - G 70 -3.8 -4.91109 | TTTTCATGATAAAAA CCTG TAAACG CAGG GAACTGAATAGTCGG Aflv_0177 187360 - 186785 - | hypothetical protein TERM 307 187090 - 187100 + g 82 -3.2 -5.44119 | TGACGTCTCTTTTTG TGAC GAT GTCG TTTTTTTGCCATACA TERM 308 187130 - 187120 - G 74 -4 -4.96848 | opp_overlap 187120 TTTGCCATACAAAAA TGAA CTG TTCA TTTTCCACTGCCCAA Aflv_0178 187464 - 188099 + | Transcriptional regulator, TetR/AcrR family TERM 309 188536 - 188525 - g 95 -5.8 -5.74684 | GAACAAAAAGAAAAA TGGC TCGT GCCA ATGGCAAAAGGAGAG Aflv_0179 188198 - 189340 + | Acyl-CoA dehydrogenase TERM 310 190644 - 190633 - gf 76 -7.2 -4.30978 | CGTAATGGATGAAAA CGGC TACT GCCG CATTACAGGAAGATT Aflv_0180 189353 - 190993 + | Acyl-CoA synthetase/AMP-acid ligase II TERM 311 191374 - 191416 + GF 81 -10.7 -3.25223 | gap 1, opp_overlap 191383, overlap 191383 GCGCGACAAACGATG GCGGAAGCAGGGGTGCCG ATTGTGCC CGGCATCTCT-TTTCCGC TTGCTGATGTCGATG TERM 312 191383 - 191408 + GF 71 -6.1 -4.20696 | opp_overlap 191383, overlap 191374 ACGATGGCGGAAGCA GGGGTGCCG ATTGTGCC CGGCATCTC TTTTCCGCTTGCTGA TERM 313 191721 - 191739 + GF 81 -7.4 -4.56597 | CCATCAAAAAGTTGT CGAAGAAG CTC CTTCTCCG TTTTTAGACGAAGAG Aflv_0181 190954 - 192366 + | Biotin carboxylase Aflv_0182 192359 - 192571 + | Biotin carboxyl carrier protein Aflv_0183 192582 - 193472 + | Hydroxymethylglutaryl-CoA lyase Aflv_0184 193469 - 194254 + | Enoyl-CoA hydratase TERM 314 195643 - 195613 - g 74 -7.6 -4.02817 | TTGCCAGAAGAAGAA CGTGCCGCTTTTAT TGA ACAAAAGCGGGAAG AATATCGGAAAGACA Aflv_0185 194260 - 195807 + | Acetyl-CoA carboxylase, carboxyltransferase component TERM 315 195854 - 195833 - f 72 -10.2 -2.60257 | opp_overlap 195833, overlap 195830 ATATGGTACAATGGA GGCGATGT GTGCTA ACATCGCC TTTTTTTCGGGAAAT TERM 316 195833 - 195854 + F 100 -10.2 -5.40474 | opp_overlap 195833 195830 ATATGGTACAATGGA GGCGATGT GTGCTA ACATCGCC TTTTTTTCGGGAAAT Aflv_0186 195984 - 196652 + | Polysaccharide deacetylase Aflv_0187 196667 - 197248 + | Uncharacterized membrane-associated protein, DedA family TERM 317 197562 - 197547 - g 95 -3.3 -6.07627 | opp_overlap 197524, overlap 197548 ATTTTGAAAAAAAAA TGAAG CGCCTT CTTCA AGAAAAAAAACCGCA TERM 318 198329 - 198315 - g 74 -4.2 -5.03314 | opp_overlap 198317, overlap 198316 198317 TCGAGCGTGAAAAAA GCGC GCAAGAG GCGC TTTACGAATGGATTG Aflv_0188 197264 - 198376 + | UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase TERM 319 198365 - 198393 + T 100 -8.9 -5.58209 | opp_overlap 198370, overlap 198367 198370 AATGTATACGCAATG AAAAAGCGATGAG CTG CTCATCGCTTCTA TTTTTTTGACTTTCC TERM 320 198367 - 198391 + T 93 -11.5 -4.41528 | opp_overlap 198370, overlap 198365 198370 TGTATACGCAATGAA AAAGCGATGAG CTG CTCATCGCTTC TATTTTTTTGACTTT TERM 321 198388 - 198370 - T 100 -13.2 -4.89009 | opp_overlap 198367 198365 198370 ATACGCAATGAAAAA GCGATGAG CTG CTCATCGC TTCTATTTTTTTGAC TERM 322 198370 - 198388 + T 100 -13.2 -4.2757 | opp_overlap 198370, overlap 198367 198365 ATACGCAATGAAAAA GCGATGAG CTG CTCATCGC TTCTATTTTTTTGAC gerKC 199521 - 198391 - | Spore germination protein GerKC TERM 323 198784 - 198798 + g 70 -3.5 -4.77165 | CTTCATGTAAATTGG GGTGC GCCCG GTACC TTTTGTTATCCAGCG TERM 324 199029 - 199019 - G 73 -5.4 -4.63218 | TTCGGTTGAATAAAA GAAC TTT GTTC ATAAATATCGGTCGG TERM 325 199533 - 199545 + r 70 -3.3 -4.88293 | overlap 199526 TCATGATTCGTCACC CGGCG TAT TGTCG TTTGTTTTTAGCATT gerKA 201080 - 199518 - | Spore germination protein GerKA TERM 326 199707 - 199695 - GR 84 -2.7 -5.59534 | AACGAGAAGAAAAAA CATTG ATG CAATA AAACCGAACAGCCCG TERM 327 200883 - 200867 - GR 70 -5.1 -4.42237 | opp_overlap 200865 200867 AATAAATGAAAATAA GCGATAA TGG TTTTCGC TCTTCTGAATAAATG gerKB 202096 - 200978 - | Spore germination protein GerKB ddl 202182 - 203249 + | D-alanyl-D-alanine ligase murF 203259 - 204635 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase TERM 328 204742 - 204717 - f 79 -9.7 -3.69338 | opp_overlap 204717 AATGAATTTCAACAA GGCACTTCCGT CTAT ACGGGAATGCC TTTTTTCGTAAGTTA TERM 329 204717 - 204742 + F 100 -9.7 -5.18357 | opp_overlap 204717 AATGAATTTCAACAA GGCACTTCCGT CTAT ACGGGAATGCC TTTTTTCGTAAGTTA TERM 330 205303 - 205318 + G 74 -4 -5.00616 | gap 1, opp_overlap 205305, overlap 205305 AGCCATGTGCCAACA G-AGCGT CAA ACGCTTC TTTTTTCAGCGACGA TERM 331 205305 - 205315 + G 79 -6.8 -4.61482 | opp_overlap 205305, overlap 205303 CCATGTGCCAACAGA GCGT CAA ACGC TTCTTTTTTCAGCGA Aflv_0194 204772 - 206187 + | ATP-dependent RNA helicase TERM 332 206187 - 206210 + F 100 -10.4 -5.27335 | opp_overlap 206185 206190 GCGCACAAAGCGATA GAAGCTGTCT GGAA AGATAGCTTC TTTTTCTTTACAGGA TERM 333 206490 - 206477 - g 82 -2.3 -5.65927 | opp_overlap 206484 TATTGAAATAAAAAA TGACG AAAA CGGCA AGCCGTATATTATTT acpS 206235 - 206597 + | Phosphopantetheinyl transferase (holo-ACP synthase) TERM 334 207516 - 207491 - g 77 -3.9 -5.18726 | overlap 207492 CTTGTACAAGAAAAA GCGCATGCTGT ACCG ACAGCAAACGT ATCGACAACTGTTAA Aflv_0196 206672 - 207691 + | hypothetical protein TERM 335 207689 - 207712 + F 100 -9 -6.09888 | gap 1, opp_overlap 207692, overlap 207692 GGGAAGGTTATGAAG TAA-GACTCGC GCG GCGAGTCTTTA TTTTTTTTGTTGACA TERM 336 207708 - 207692 - f 87 -12.3 -3.40639 | opp_overlap 207689 207692 AAGGTTATGAAGTAA GACTCGC GCG GCGAGTC TTTATTTTTTTTGTT TERM 337 207692 - 207708 + F 100 -12.3 -5.42458 | opp_overlap 207692, overlap 207689 AAGGTTATGAAGTAA GACTCGC GCG GCGAGTC TTTATTTTTTTTGTT TERM 338 208537 - 208522 - g 83 -9 -4.09685 | CCTTATCCGTTAAAA GAAGCG TTTT CGCTTC ACAGTCGCTTAACGC alr 207787 - 208944 + | D-alanine racemase Aflv_0198 209091 - 209378 + | Transcriptional regulator, CopG family mazF 209383 - 209733 + | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse) TERM 339 209765 - 209747 - f 81 -7.5 -4.59511 | opp_overlap 209747 AATATGCTGGAAAAA TAGCTAC GTTGT GTAGCTA TTTTTGTTTAGGGGA TERM 340 209747 - 209765 + F 91 -8.2 -5.27335 | opp_overlap 209747 AATATGCTGGAAAAA TAGCTACG TTG TGTAGCTA TTTTTGTTTAGGGGA Aflv_0200 209755 - 211956 + | Transcriptional accessory protein Tex, contains RNAse H and S1 domains TERM 341 211974 - 211934 - T 83 -12.1 -3.17688 | opp_overlap 211944, overlap 211925 211936 211944 CAATGATTCCACCAA CATTGGAAAACACACTG TCATGAG CAGTGTGTTTTCCGATA AAAAAACCAACATTG TERM 342 211972 - 211936 - T 85 -12.5 -3.1478 | opp_overlap 211944, overlap 211925 211934 211944 ATGATTCCACCAACA TTGGAAAACACACTG TCATGAG CAGTGTGTTTTCCGA TAAAAAAACCAACAT TERM 343 211944 - 211964 + T 73 -7.6 -4.13767 | opp_overlap 211936 211934 211944 ACCAACATTGGAAAA CACACTGT CATGA GCAGTGTG TTTTCCGATAAAAAA TERM 344 211964 - 211944 - T 73 -6.9 -4.20042 | opp_overlap 211944, overlap 211936 211934 ACCAACATTGGAAAA CACACTG TCATGAG CAGTGTG TTTTCCGATAAAAAA Aflv_0201 212064 - 211951 - | hypothetical protein Aflv_0202 212136 - 212591 + | Zn-dependent metalloprotease, SprT family TERM 345 212989 - 213013 + F 85 -7.1 -4.86731 | GTACGGGTCATCGTT TGGAGTGCTCA TTT TGTTCACTCCA TTTTATTTCGGAGGA TERM 346 213457 - 213473 + F 72 -4.4 -4.79223 | gap 1 TTCAAGTCCCTCCAC CCGCACC AGTC GGT-CGG TTTTTAATGATATGC TERM 347 214116 - 214101 - f 72 -9 -3.32343 | overlap 214112 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 348 215226 - 215214 - f 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 349 215710 - 215726 + F 82 -8.7 -4.23486 | overlap 215707 215711 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 350 215711 - 215725 + F 75 -10 -3.13007 | overlap 215710 215707 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 351 216129 - 216110 - f 89 -12.2 -3.66803 | opp_overlap 216109 216108 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 352 217166 - 217148 - f 71 -6 -4.21194 | overlap 217152 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 353 217662 - 217649 - f 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 354 218844 - 218810 - f 70 -7.7 -3.72453 | gap 1, opp_overlap 218811, overlap 218803 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGGTTCGAGG TERM 355 218968 - 218953 - f 70 -9 -3.1506 | AAAGCTTTTGACGAA GACGTG TGTG CACGTC GAACGGAAAAAGCGC TERM 356 219587 - 219608 + F 85 -8.8 -4.35708 | overlap 219599 ATATGTGTAGCATTT CCTTAGGA GAGTGA TCCTAAGG TCTTTTTTGTATGTT TERM 357 219599 - 219610 + F 76 -2.2 -5.47431 | overlap 219587 TTTCCTTAGGAGAGT GATC CTAA GGTC TTTTTTGTATGTTGA Aflv_0203 219651 - 220124 + | ATP/GTP binding protein TERM 358 220222 - 220206 - gf 100 -5.1 -5.81032 | GAATTTGAAAAAAAA TCATTCG ATC CGAGTGA TGCCTGCCATTGAAT Aflv_0204 220087 - 220809 + | Glycoprotease family enzyme Aflv_0205 220810 - 221253 + | Acetyltransferase gcp 221238 - 222263 + | ATP-binding apurinic endonuclease TERM 359 222261 - 222302 + T 70 -9.7 -2.64595 | gap 1, opp_overlap 222270, overlap 222270 CCAAGTTTACTGTTA TAGCAAGAAGGTGTCCCA AAAGCAA TGGGGCACCTTTTT-CTA ATTGTCATACGAATT TERM 360 222270 - 222294 + T 90 -9.3 -5.01535 | opp_overlap 222270, overlap 222261 CTGTTATAGCAAGAA GGTGTCCCA AAAGCAA TGGGGCACC TTTTTCTAATTGTCA TERM 361 222525 - 222553 + T 76 -6.7 -4.36508 | opp_overlap 222525 222523 222526 222528, overlap 222522 222526 TCTTTGTGTAAAAGA TGAGCTAGCCC ACAAATA GAGCTAGCTCG TTATTATTTTTGTAA TERM 362 222552 - 222526 - T 73 -10.2 -2.78032 | opp_overlap 222525 222522 222526, overlap 222525 222523 222528 CTTTGTGTAAAAGAT GAGCTAGCCC ACAAATA GAGCTAGCTC GTTATTATTTTTGTA Aflv_0207 224452 - 222557 - | ATPase component of an ABC transporter with duplicated ATPase domains TERM 363 223099 - 223111 + g 74 -4.7 -4.83169 | overlap 223095 TCATGAGTTTAGCGA GAGCG AGT CGCGC TTTTTCTCCACCGCT TERM 364 224772 - 224754 - g 78 -7.4 -4.56597 | overlap 224755 TCGTTTTTTGAAAAA CTTGCATG CAT CAGGCAAG CAACGTGTATCTTCA Aflv_0208 224680 - 225315 + | AT-rich DNA-binding protein TERM 365 225316 - 225339 + T 90 -8.8 -5.08824 | opp_overlap 225312 225317, overlap 225317 TACGGAAATGAGTAA ACCTCCCGTT TACG AGCGGGAGGC TTTTTTCCATAAAGA TERM 366 225317 - 225338 + T 90 -12.3 -3.64812 | opp_overlap 225312 225317, overlap 225316 ACGGAAATGAGTAAA CCTCCCGTT TACG AGCGGGAGG CTTTTTTCCATAAAG TERM 367 225338 - 225317 - T 84 -10.1 -3.89412 | opp_overlap 225317 225316, overlap 225312 ACGGAAATGAGTAAA CCTCCCGTT TACG AGCGGGAGG CTTTTTTCCATAAAG Aflv_0209 225513 - 225325 - | hypothetical protein Aflv_0210 226232 - 225495 - | Predicted metal-dependent membrane protease TERM 368 225774 - 225756 - G 80 -4.7 -5.18726 | GGCTGATAAGAAAAA GTTATAT TTTTG ATATAAC GTTCCGAAAATAATT groES 226458 - 226742 + | Chaperonin GroES (HSP10 family) TERM 369 227993 - 227981 - g 72 -7.7 -3.87807 | AACAGAATTAAAAGA GCGTA AAT TACGC ATTGAAGACGCATTA groEL 226815 - 228431 + | Chaperonin GroEL (HSP60 family) TERM 370 228475 - 228505 + F 93 -10.5 -4.9725 | TATATTCAATCGTAA GGGCTACTTCCTT ATAAA AAGGGGGTAGTCC TTTTTGTGTGAAAAT TERM 371 228797 - 228820 + F 95 -4.5 -5.82172 | overlap 228798 ACCTCACATTTCGCA CCCTCTCGA CAAAAA TCGGGAGGA TTTTTTTATCTTCAT TERM 372 228798 - 228819 + F 75 -8 -4.06863 | overlap 228797 CCTCACATTTCGCAC CCTCTCGA CAAAAA TCGGGAGG ATTTTTTTATCTTCA TERM 373 229266 - 229286 + G 70 -7.6 -3.61654 | opp_overlap 229275 TTCGGGTGTTCCATG CCGATACG ACCGA TGTATCGG TTTACGGTACGTATG Aflv_0213 228884 - 229540 + | Transposase Aflv_0214 230206 - 229883 - | Transposase bls 231770 - 230244 - | Carboxyethyl-arginine beta-lactam-synthase (Beta-lactam synthetase) argJ 233003 - 231804 - | N-acetylglutamate synthase (N-acetylornithine aminotransferase) Aflv_0217 234109 - 233030 - | Predicted carboxylase (ATP-grasp family) TERM 374 234032 - 234044 + g 93 -4.1 -5.88471 | opp_overlap 234033, overlap 234033 TGAGAAAGTTAGTAA TCCAT GAA ATGGG TTTTTTTTCATAATA speB 234634 - 235575 + | Arginase TERM 375 235632 - 235662 + F 91 -6.3 -5.48054 | gap 1, opp_overlap 235634 AAAATTCTGTGTAAC TATTCAGC-CACAT GATC AAGTGAGCTGAATA TTTTTTGCTTTTCCT Aflv_0219 235709 - 237166 + | Transposase TERM 376 237461 - 237445 - gf 78 -2.2 -5.44119 | overlap 237455 TGCACTCCAAAAAAA CCGC ATGATATTA GCGG AGTACGCAAAAGAAT Aflv_0220 237103 - 238083 + | Carboxyethyl arginine synthase (C-terminal TPP binding domain) TERM 377 238102 - 238092 - f 81 -2.6 -5.5604 | opp_overlap 238092 TGAATGAAGAAAAAA TTAT TAA ATAA CTTTTTAGGTTTTAG TERM 378 238124 - 238146 + F 76 -7 -4.43681 | opp_overlap 238126, overlap 238126 AGGTTTTAGGTAGTT AAGGAGGAGA TAT TTTCCTCCTC TTTTCGTATTAAATA TERM 379 238126 - 238144 + F 83 -9.6 -3.81853 | opp_overlap 238126, overlap 238124 GTTTTAGGTAGTTAA GGAGGAGA TAT TTTCCTCC TCTTTTCGTATTAAA TERM 380 238407 - 238397 - g 71 -4 -4.81212 | CTTATCATAATAAAA TTCT GAA AGAA GTACGTTACGGAGAT Aflv_0221 238249 - 239487 + | Alanine-anticapsin ligase bacD related protein TERM 381 240475 - 240500 + G 71 -3.3 -4.99947 | gap 1 AGTAATATATCCCCA CCTGGATTAGCT GGA AGCTAC-CTAGG TTTTGTTTCCTTAGG Aflv_0222 239494 - 240711 + | Permease of the major facilitator superfamily, mdtH subfamily Aflv_0223 240895 - 241350 + | Acetyltransferase (GNAT family) TERM 382 241380 - 241410 + T 95 -6.3 -5.61913 | gap 1, opp_overlap 241382 TTCTATTCTCGTAAC TATTCAGC-CACAT CATA AAGTGAGCTGAATA TTTTTTGTATTTCTT Aflv_0224 241936 - 241505 - | hypothetical protein TERM 383 242269 - 242306 + H 100 -13.6 -5.60993 | opp_overlap 242273 TAAATGACCCGACTA CGAAGGCAGTGTTCTA TATTGC TAGAATTCTGCCTTCG TTTTTTTATGAGAGG TERM 384 243649 - 243638 - g 84 -3.6 -5.46129 | opp_overlap 243640, overlap 243639 243640 GAAGAAATTAAAAAA GCCG GTCT CGAC CGTGATATTTGGCAA guaA 242369 - 243904 + | GMP synthetase TERM 385 244087 - 244111 + G 79 -10.8 -3.23734 | overlap 244085 ATGTGTAATGTGGGG GAGAGGAATC TGCTT GGTTCCTCTC TATGTTCTGTGCATT TERM 386 244141 - 244165 + G 100 -11.5 -5.65496 | TATGCATCATAGTCA CGCTTCTGGTA GTT TGCTAGAAGCG TTTTTCTTTTTACTA pbuG 244079 - 245530 + | Xanthine/uracil/vitamin C permease TERM 387 245548 - 245605 + T 90 -12.4 -3.58522 | gap 2, opp_overlap 245554 245556 245557 245571, overlap 245550 245557 ACCGTAGTTATGGAT GATGAAGAGGGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCCTTTTTCATG TTTAAAAATGCTGAT TERM 388 245550 - 245603 + T 100 -15 -3.36991 | gap 2, opp_overlap 245554 245556 245557 245571, overlap 245548 245557 CGTAGTTATGGATGA TGAAGAGGGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCCTTTTTCA TGTTTAAAAATGCTG TERM 389 245596 - 245557 - T 70 -9.5 -2.50195 | gap 2, opp_overlap 245550 245548 245557, overlap 245556 245554 245571 ATGGATGATGAAGAG GGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCC TTTTTCATGTTTAAA TERM 390 245557 - 245596 + T 100 -11.7 -4.93696 | gap 2, opp_overlap 245557 245556 245554 245571, overlap 245550 245548 ATGGATGATGAAGAG GGGCTGTCTAATAAGTCGA TTTC TCGGCT-ATTAGAC-GCCC TTTTTCATGTTTAAA TERM 391 246069 - 246054 - T 72 -9 -3.32343 | overlap 246065 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 392 247179 - 247167 - T 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 393 247541 - 247509 - T 74 -4.8 -4.68384 | gap 1, overlap 247512 247521 247540 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 394 247633 - 247610 - T 76 -4.5 -5.07523 | gap 1 TAGACATAAAGAAAA GCGGAGGCGA CTGTT TAGCC-CCGC TAGACATAACGTAAT TERM 395 247677 - 247693 + T 82 -8.7 -4.23486 | overlap 247674 247678 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 396 247678 - 247692 + T 75 -10 -3.13007 | overlap 247677 247674 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 397 248096 - 248077 - T 89 -12.2 -3.66803 | opp_overlap 248076 248075 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 398 249133 - 249115 - T 71 -6 -4.21194 | overlap 249119 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 399 249629 - 249616 - T 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 400 250811 - 250777 - T 70 -7.7 -3.72453 | gap 1, opp_overlap 250778, overlap 250770 ACGAAGAACGCGAAA GGCCTGC-GAGGAGGC TGTT GCCGCCACAGCAGGAC TGAAGCGATTCGAGG TERM 401 250935 - 250920 - T 70 -9 -3.1506 | AAAGCTTTTGACGAA GACGTG TGTG CACGTC GAACGGAAAAAGCGC TERM 402 251201 - 251231 + T 85 -4.1 -5.65177 | overlap 251190 GGGCGGACATGGCAA GTTAGAGGGCA TCTCGACTT TGTTCTCTAAC TTTTTTTGTCCATGT TERM 403 251251 - 251261 + T 73 -6.8 -4.16279 | TTTGTCCATGTATTT GCGT TTA ACGC TTTTACAATCCTCTC TERM 404 251288 - 251313 + T 100 -10.5 -5.74086 | opp_overlap 251289, overlap 251289 TCTCCCCCATAGTGA AGAGCTAACCA ATGC TGGTTAGCTCA TTTTTTATTTAATTT TERM 405 251289 - 251312 + T 100 -14 -4.00791 | opp_overlap 251289, overlap 251288 CTCCCCCATAGTGAA GAGCTAACCA ATGC TGGTTAGCTC ATTTTTTATTTAATT TERM 406 251312 - 251289 - T 93 -14 -3.12351 | opp_overlap 251289 251288 CTCCCCCATAGTGAA GAGCTAACCA ATGC TGGTTAGCTC ATTTTTTATTTAATT Aflv_0227 251707 - 251318 - | Molecular chaperone (HSP20 family) TERM 407 251989 - 252033 + H 93 -5.9 -5.64274 | gap 1 TAGGGGCGAAATATG TCCAGAACGATG-CTTTC CCTTATGATC GAGGGACGTCGTTCTGGA TTTTTTTCTGAATGA purE 252068 - 252556 + | Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase purK 252540 - 253688 + | Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) purB 253661 - 254980 + | Adenylosuccinate lyase purC 255046 - 255768 + | Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase purS 255756 - 256010 + | Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component TERM 408 256390 - 256377 - g 71 -6.7 -4.20834 | opp_overlap 256357 256355 TCGAAAATAACGAAA CGATG TTTA CATCG CAATACGAGCAAGGA purQ 256007 - 256693 + | Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain TERM 409 256893 - 256874 - gf 77 -3.6 -5.14965 | ACCTGTATTAAAAAA GTTTCC GACTGAAG GGAAAC ATGTGCTCCAAGGAC TERM 410 257415 - 257397 - gf 71 -2.2 -5.10208 | CAATCTGAACAAAAA CGGCCAGC TGT GCAAGTCG GGGATCCATTTATGG purL 256677 - 258899 + | Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain purF 258818 - 260302 + | Glutamine phosphoribosylpyrophosphate amidotransferase purM 260265 - 261302 + | Phosphoribosylaminoimidazole synthetase purN 261299 - 261901 + | Phosphoribosylglycinamide formyltransferase purH 261879 - 263414 + | Inosine-monophosphate cyclohydrolase purD 263430 - 264710 + | Phosphoribosylglycinamide synthetase Aflv_0240 264777 - 264673 - | hypothetical protein TERM 411 264793 - 264816 + r 100 -15.4 -3.9461 | ACTTTTTCTCCTTTC CCCCCTTGTA TACG TACAAGGGGG TTATTGTTACGAAGG Aflv_0241 265092 - 264823 - | hypothetical protein TERM 412 265564 - 265539 - g 76 -10.7 -2.59431 | opp_overlap 265546, overlap 265535 265546 TTTTTTTACAATTGA CAAAAAAGAAA GCGT TTTCTTTTTTG TCTGAGATGGAAAAA TERM 413 265546 - 265557 + G 79 -3 -5.37043 | opp_overlap 265539 265535 265546 ACAATTGACAAAAAA GAAA GCGT TTTC TTTTTTGTCTGAGAT TERM 414 265557 - 265546 - g 79 -3 -5.3236 | opp_overlap 265546, overlap 265539 265535 ACAATTGACAAAAAA GAAA GCGT TTTC TTTTTTGTCTGAGAT TERM 415 266446 - 266470 + G 71 -4.2 -4.83593 | opp_overlap 266435 TACATCTGCTGATGA GCTATCAACG GATCA CGATGAAAGC TTTTTAATGCTTATT Aflv_0242 265145 - 266914 + | Adenine deaminase Aflv_0243 266949 - 267971 + | Predicted extracellular solute-binding protein, TRAP-type Aflv_0244 267964 - 268299 + | Trp repressor TERM 416 268308 - 268282 - f 71 -9.4 -2.74982 | opp_overlap 268282, overlap 268281 268279 268276 268284 AATGAACAACAAGAG GAGGCTGGCTCA CAA TGAGTCAGCTTC TTTTTACGATTTTTT TERM 417 268282 - 268308 + F 100 -13.8 -4.77925 | opp_overlap 268282 268281 268279 268276 268284 AATGAACAACAAGAG GAGGCTGGCTCA CAA TGAGTCAGCTTC TTTTTACGATTTTTT pcrB 268363 - 269058 + | Predicted phosphate-binding enzyme (TIM-barrel fold), PcrB TERM 418 269665 - 269649 - g 89 -7.3 -4.93316 | opp_overlap 269657, overlap 269650 CAAGAATATCAAAAA CGATTGC TGC GCAATCA TGCGCTTGATTTTGA TERM 419 269664 - 269650 - g 71 -8.6 -3.54363 | opp_overlap 269657, overlap 269649 AAGAATATCAAAAAC GATTGC TGC GCAATC ATGCGCTTGATTTTG TERM 420 269657 - 269670 + G 70 -8.1 -3.73345 | opp_overlap 269650 269649 TCAAAAACGATTGCT GCGCA ATCA TGCGC TTGATTTTGATGATT pcrA 269088 - 271268 + | ATP-dependent DNA helicase PcrA TERM 421 271465 - 271449 - g 86 -7.9 -4.74285 | opp_overlap 271461 ATCCACAATATAAAA CGCCGGA CTC TCCGTCG CAGCGCGTTGGTGGT TERM 422 272663 - 272636 - g 77 -4.8 -4.93296 | opp_overlap 272638 272641, overlap 272638 272640 GGACTAGGAGAAAAA GTCATTGCTCAA CTAT TTGAGCATCGTC TCGTTCGCAGCGTAG ligA 271274 - 273292 + | NAD-dependent DNA ligase TERM 423 274125 - 274114 - g 82 -3 -5.47399 | opp_overlap 274114 TGAAGCGGAAAAAAA TCAT CGCG ATGA TTTAGTGAAATTTTT Aflv_0248 273296 - 274429 + | Alkaline D-peptidase family extracellular enzyme TERM 424 274996 - 274972 - g 70 -5.6 -4.27584 | ATGTTGAAGTTAAAA GACGGCATTC CTGTT GAGAGCCGTC CAGGAGAAACAAATC rocA 274516 - 276063 + | Pyrroline-5 carboxylate dehydrogenase TERM 425 276072 - 276099 + F 100 -14.2 -3.64103 | opp_overlap 276072 GTTTTAATAGAAAAA CCCCTCTTGGCG AAAA TGCTAAGAGGGG TTTAAAGTATACATC TERM 426 276099 - 276072 - f 95 -11.3 -5.0916 | opp_overlap 276072 GTTTTAATAGAAAAA CCCCTCTTGGC GAAAAT GCTAAGAGGGG TTTAAAGTATACATC Aflv_0250 276150 - 276893 + | Minimal nucleotidyltransferase fused to substrate-bimding domain (HEPN domain) TERM 427 276965 - 276996 + T 75 -9.4 -3.30441 | gap 1, opp_overlap 276967 CTGGTTCACGCAGTA CACCC-GATGCGGCG CAA CACCTCATCCGGGTG TTGTAGAACGTACTG Aflv_0251 277386 - 276955 - | Transposase Aflv_0252 278014 - 277364 - | Transposase TERM 428 277439 - 277425 - G 72 -10 -2.87931 | CCCATGTCGTACACA GCGCTT GAT AAGCGC GAACATGTGTCCCAT TERM 429 278387 - 278375 - g 86 -3.3 -5.66989 | opp_overlap 278375, overlap 278364 GAAACACGAAAAAAA CGTGT GGG ACTCG TTATGTCTTCTGTTG Aflv_0253 278062 - 278403 + | Transposase Aflv_0254 278665 - 279912 + | Fibronectin type 3 domains containing extracellular protein Aflv_0255 279939 - 280244 + | Predicted membrane protein TERM 430 280338 - 280297 - T 89 -10.4 -4.18167 | gap 1, opp_overlap 280311, overlap 280302 AAAGAAGTATATAAA TCGAATTTCATAGAGAGGG AAATG CCCTCTCTATGAAAA-CAA CCGATTTCTCATTTT TERM 431 280334 - 280302 - T 100 -18 -3.36096 | opp_overlap 280311, overlap 280297 AGTATATAAATCGAA TTTCATAGAGAGGG AAATG CCCTCTCTATGAAA ACAACCGATTTCTCA Aflv_0256 280917 - 280327 - | hypothetical protein TERM 432 280788 - 280806 + g 79 -3.1 -5.29445 | overlap 280774 CTTCACGAATAGCTC GCTGTTC TTCGC GAATGGC TTTTTGTTCTTCACG adeC 282662 - 280950 - | Adenine deaminase TERM 433 282772 - 282782 + H 81 -2.6 -5.68023 | overlap 282777 AAATTATACGAGTTG TTTT TTG AAAA TTTTTTTCATTCTAC TERM 434 283004 - 283031 + H 80 -7.7 -4.34488 | opp_overlap 283003 283022 TCATAACAATAGCAG GGGTGTCCC AAAAATTAAC GGGGCACCC TTTGTTATACCTATA gatC 283213 - 283512 + | Glutamyl-tRNA(Gln) amidotransferase subunit C TERM 435 283660 - 283648 - g 72 -7.7 -3.77111 | overlap 283642 GACGAAAAAGTACAA GCGTT TTT AACGC TCAACGAAGAACAAG gatA 283525 - 284982 + | Glutamyl-tRNA(Gln) amidotransferase subunit A gatB 284994 - 286427 + | Glutamyl-tRNA(Gln) amidotransferase subunit B TERM 436 286460 - 286428 - T 70 -7.7 -3.69564 | opp_overlap 286427 286430, overlap 286422 286432 ATCAACAAACGATAA TCGATACCCCCATGT ATT ACATGGGGGTAAATA CTTTTGGCAATGCAA TERM 437 286430 - 286458 + T 75 -10.3 -3.09004 | opp_overlap 286428 286422 286432, overlap 286427 CAACAAACGATAATC GATACCCCCATGT ATT ACATGGGGGTAAA TACTTTTGGCAATGC TERM 438 286456 - 286432 - T 100 -17.3 -2.65206 | opp_overlap 286430 286427, overlap 286428 286422 ACAAACGATAATCGA TACCCCCATGT ATT ACATGGGGGTA AATACTTTTGGCAAT Aflv_0261 287013 - 286444 - | Endonuclease, Uma2 family (restriction endonuclease fold) TERM 439 286987 - 286998 + g 82 -2.2 -5.63517 | TGCGTAATCTGCATA TGTC CAAA GACG TTTTTTATTTGGCAA Aflv_0262 287953 - 288441 + | Nitroreductase family domain protein TERM 440 289142 - 289158 + G 79 -8 -4.24948 | GACAGTGGCGATGAT TACCGG AGGGG CCGGTA TTTTGAGTATACTAG azlC 288954 - 289649 + | Branched-chain amino acid permease (azaleucine resistance) TERM 441 289881 - 289892 + G 71 -3 -5.05782 | opp_overlap 289881 AGCTTTAACAATTAA GATT TCCA AATC TTTTTTACCATCCGT Aflv_0264 289657 - 289950 + | Predicted membrane protein TERM 442 289979 - 289999 + F 93 -12.7 -4.04318 | opp_overlap 289982, overlap 289982 TTTCTCTCGCAGGAG TAACCCTCT TAG AGAGGGTTA TTTGTCATGTCTAAA TERM 443 289996 - 289982 - f 75 -10 -3.21099 | opp_overlap 289982 289979 CTCTCGCAGGAGTAA CCCTCT TAG AGAGGG TTATTTGTCATGTCT TERM 444 289982 - 289996 + F 89 -10 -4.13973 | opp_overlap 289982, overlap 289979 CTCTCGCAGGAGTAA CCCTCT TAG AGAGGG TTATTTGTCATGTCT TERM 445 290913 - 290935 + F 84 -7.7 -4.80882 | opp_overlap 290911 290910 290913 GGCTGAATAAAATTA CCTCCCTTG ACTAC CAAGCGAGG TTTTTAGTCTAGAAT TERM 446 291669 - 291659 - f 81 -5.4 -5.02074 | CGATTTGCCAAAAAA CGAA GCC TTCG TCACGGGCCACGCAC TERM 447 291750 - 291783 + F 72 -8.9 -3.39955 | CTGGGGACATTCTCT CGTTTGGCTCATGGT TCAT ACGATGACCCAAGCG TTCCCTTTTGCCTTT Aflv_0265 292597 - 293031 + | SAM-dependent methyltransferase TERM 448 293700 - 293653 - T 80 -10.7 -3.30159 | gap 1, opp_overlap 293653 293653 293654, overlap 293654 TGAATCTTTTCACAA CTGTCGTCGACCCCC-AATGTT GCAAA AACCCCAGGGGATCGACGACAA GTTATTTTTGTGTTT TERM 449 293699 - 293654 - T 81 -12 -2.57881 | gap 1, opp_overlap 293653 293653 293654, overlap 293653 GAATCTTTTCACAAC TGTCGTCGACCCCC-AATGTT GCAAA AACCCCAGGGGATCGACGACA AGTTATTTTTGTGTT Aflv_0266 294309 - 293971 - | hypothetical protein TERM 450 294203 - 294213 + g 75 -5.4 -4.83615 | ACTTGTTGGCGTAAG GAAG ATA CTTC TTTTTCTAACGAATC TERM 451 294780 - 294765 - g 74 -4.6 -4.7629 | TGAGGAATTTAAAAA GAAGCG ATTT CGCTAC CAATGCAGCCCATAT TERM 452 294883 - 294869 - g 82 -5.6 -5.00616 | overlap 294870 GCTCGCTCGAAAAAA CGCGGT TTG ACCGCC TGTACGCATCGCTTG TERM 453 294882 - 294870 - g 75 -9.1 -3.60048 | overlap 294869 CTCGCTCGAAAAAAC GCGGT TTG ACCGC CTGTACGCATCGCTT TERM 454 295166 - 295184 + G 74 -6.6 -4.37092 | TGCTCGAAGATTTGC CGGCGGAC GGG GTACGTCG TTTTATCGAGGAAGT Aflv_0267 294463 - 295965 + | hypothetical protein Aflv_0268 295979 - 297145 + | hypothetical protein TERM 455 297316 - 297304 - gf 87 -4.7 -5.44119 | opp_overlap 297306, overlap 297305 297306 TGGACGGCAAAAAAA CGCCG GAC CGGCT CGACCCGTTCGGTTC TERM 456 297315 - 297305 - gf 75 -8.2 -3.85748 | opp_overlap 297306, overlap 297304 297306 GGACGGCAAAAAAAC GCCG GAC CGGC TCGACCCGTTCGGTT TERM 457 299583 - 299571 - gf 76 -3.3 -5.18355 | overlap 299574 299575 CGGAAAAACGAAAAA CTAGC GCA GCTTG CCCGCGATTGGCAAC TERM 458 299991 - 299975 - gf 70 -7.9 -3.70007 | overlap 299971 299978 ACCAGCGAAAATGAA CGAGCGC ATT GCGCTAG AACATGCACTAAAAA Aflv_0269 297132 - 301271 + | Predicted ATPase TERM 459 301288 - 301312 + G 82 -5.7 -5.02074 | opp_overlap 301273, overlap 301289 GCGGTACAATTTTTC CGCGGTGAA CGTTCGT TTCACCGCC TTTTTTGCGAAATGA TERM 460 301289 - 301311 + G 78 -9.2 -3.60762 | opp_overlap 301273, overlap 301288 CGGTACAATTTTTCC GCGGTGAA CGTTCGT TTCACCGC CTTTTTTGCGAAATG TERM 461 302088 - 302115 + G 90 -11.4 -3.61398 | AAGTGTTATCTTTGT CGTCGAAAATGC TGGC GTGTTTTCGACG TTATTAGAGGCGAAC TERM 462 302264 - 302252 - g 74 -4.7 -4.8269 | opp_overlap 302253, overlap 302253 CAGAAGGATTAAAAA TGGCG CAG CGCCT TGTCGACCGGTACGG TERM 463 302263 - 302253 - g 71 -8.2 -3.48529 | opp_overlap 302253, overlap 302252 AGAAGGATTAAAAAT GGCG CAG CGCC TTGTCGACCGGTACG Aflv_0270 301246 - 302490 + | DNA topoisomerase IV subunit A, contains TOPRIM domain Aflv_0271 302495 - 303844 + | NAD-dependent aldehyde dehydrogenase TERM 464 303974 - 304006 + F 100 -10.7 -6.23317 | opp_overlap 303972 303974 ATATAAAAAATTACA CTTTTCTCGCTCGTT TTT AAGGGGTGAGAAAAG TTTTTTTGTTTTTGT TERM 465 304130 - 304147 + F 76 -7.1 -4.14927 | opp_overlap 304130 ATAGTGTTAATACTA CAAAGTT AATA AACTTTG TTCTGTTTTATTTGT qoxA 304202 - 305176 + | Cytochrome aa3 quinol oxidase subunit II TERM 466 305494 - 305504 + GF 74 -4.6 -4.78764 | overlap 305502 TTATGATTTTGTTTA TGGC GAT GCCG TTTTTGATCGGTTTA TERM 467 305585 - 305597 + GF 74 -4.1 -5.00616 | GCAGTTGAACGCACT TAGCT TTT GGCTA TTTTTTAGCGGGGCG TERM 468 306474 - 306487 + GF 74 -5.3 -4.66537 | overlap 306464 306462 TTGTATTATTGGTGG CCAAA AATG TTTGG TTTTATGTTAAACGA TERM 469 306875 - 306858 - gf 78 -4.1 -5.21709 | gap 1, overlap 306859 TGGCATATGAAAAAA CGTG-GCG AAA CGCTCACA TTAAAAGGAAGCGAC qoxB 305145 - 307142 + | Cytochrome aa3 quinol oxidase subunit I qoxC 307132 - 307737 + | Cytochrome aa3 quinol oxidase subunit III qoxD 307738 - 308037 + | Cytochrome aa3 quinol oxidase subunit IV TERM 470 308060 - 308040 - f 76 -6.9 -4.34402 | opp_overlap 308040 TGCCGCACATTAAAA CAACTGG TTATACG CCAGTTG TTTTTGTATATACAT TERM 471 308040 - 308060 + F 86 -7.6 -5.04597 | opp_overlap 308040 TGCCGCACATTAAAA CAACTGGT TATAC GCCAGTTG TTTTTGTATATACAT Aflv_0276 308139 - 309647 + | Sensory protein with an HD-GYP output domain TERM 472 309645 - 309666 + GT 100 -8.8 -6.02914 | opp_overlap 309643 CAAGAAAAAGTGAGT TAGATGCC AACGAC GGCATCTA TTTTTTTTATGTAAG TERM 473 309864 - 309853 - gT 88 -3 -5.89921 | ACTACAAGAAAAAAA TGAA CAGC TTCA AAAGGAAAACGAACA Aflv_0277 309578 - 310408 + | hypothetical protein TERM 474 310449 - 310409 - T 88 -11.5 -3.56161 | gap 1, opp_overlap 310413 310420, overlap 310411 310413 310420 GAATGGACGACATAA CATATACAAAAGGTGTCC GGATAG GGACACCTTTTGTAT-TA CTCGCCTTTTAATTG TERM 475 310448 - 310411 - T 100 -14.4 -3.3517 | opp_overlap 310413 310420, overlap 310409 310413 310420 ATGGACGACATAACA TATACAAAAGGTGTCC GGATAG GGACACCTTTTGTATT ACTCGCCTTTTAATT TERM 476 310446 - 310413 - T 100 -17 -3.24076 | opp_overlap 310413 310420, overlap 310411 310409 310420 GGACGACATAACATA TACAAAAGGTGTCC GGATAG GGACACCTTTTGTA TTACTCGCCTTTTAA TERM 477 310413 - 310446 + T 100 -17 -3.21938 | opp_overlap 310411 310409 310413 310420, overlap 310420 GGACGACATAACATA TACAAAAGGTGTCC GGATAG GGACACCTTTTGTA TTACTCGCCTTTTAA TERM 478 310420 - 310439 + T 89 -9.3 -4.70583 | opp_overlap 310413 310411 310409 310420, overlap 310413 ATAACATATACAAAA GGTGTCC GGATAG GGACACC TTTTGTATTACTCGC TERM 479 310439 - 310420 - T 89 -9.3 -4.69028 | opp_overlap 310420 310413, overlap 310413 310411 310409 ATAACATATACAAAA GGTGTCC GGATAG GGACACC TTTTGTATTACTCGC pspA 311118 - 310447 - | Phage shock protein A TERM 480 310805 - 310834 + gT 100 -8 -5.61596 | gap 1 TAGGCGACTTTTTCT TGAAGGGCC-ATC TTTGC GATCGGCTCTTCA TTTTTTTCTACAGCT TERM 481 310897 - 310911 + gT 75 -2.8 -5.18726 | overlap 310899 TTCTTCTGCATCTGC GATGAG ACG CTCATA TTTTTGTTCTAGCAC Aflv_0279 311584 - 311081 - | hypothetical protein TERM 482 311657 - 311639 - R 100 -6 -6.20267 | opp_overlap 311639 TGAAAAATAAAAAAA CGTGCA ACATTTA TGCACG TTCATTCGGAAAAGT resE 313073 - 311649 - | Signal transduction histidine kinase TERM 483 312940 - 312925 - GR 81 -5.4 -5.08011 | opp_overlap 312925 312935 312937, overlap 312935 AAAATGGCTAAAAAA GCGATA AGAA TACCGC TATATGTGGTAGTTA Aflv_0281 313689 - 313009 - | DNA-binding response regulator, OmpR family (REC-wHTH domains) TERM 484 313095 - 313109 + gH 72 -6.4 -4.28548 | opp_overlap 313089, overlap 313078 TACGCAATAGCTTAA CGGTTG CGT CAATCG TTTTCATCGATACGT TERM 485 313461 - 313473 + gH 71 -4.8 -4.65747 | opp_overlap 313469 313472 ACATTAAAATCGCTC CGTG ATAAC CACG TTTTCTTAAACGTTG TERM 486 313757 - 313738 - H 70 -2.8 -5.13521 | overlap 313740 313743 313749 AAATGAGTGAAAAAA GATAAGGG AAAT CCCCTATG GGTATATAAGTTAAC TERM 487 313944 - 313926 - g 78 -2.4 -5.4505 | overlap 313928 TCTGTTAAGAAAAAA TCGTCAAT TAC ATGGACAA GTGTTGCTTATTGAT Aflv_0282 313840 - 315039 + | NAD(FAD)-dependent dehydrogenase Aflv_0283 315052 - 315576 + | hypothetical protein TERM 488 316605 - 316617 + G 70 -7.7 -3.57797 | overlap 316603 ATGTACAAACGATTC GCAAG GCG CTTGC TTATATCGGTTTAGA Aflv_0284 315578 - 317002 + | Zn-dependent hydrolase and Rhodanese-related sulfurtransferase TERM 489 317021 - 317003 - f 72 -8.8 -3.56727 | opp_overlap 317003 GTGAAGCAATCATAA GGGCTGAC GTT GTCAGTCC TTTCTTTTCATCTTA TERM 490 317003 - 317021 + F 93 -11 -4.77698 | opp_overlap 317003 GTGAAGCAATCATAA GGGCTGAC GTT GTCAGTCC TTTCTTTTCATCTTA TERM 491 317900 - 317877 - gf 77 -6.1 -4.50627 | gap 1, opp_overlap 317882 TATCGATTAAACAAA CAGA-ACGAG AATTA CTCGTGTCTG TTGAAGATAACGGCG Aflv_0285 317069 - 318088 + | Signal transduction histidine kinase yvqC 318060 - 318701 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 492 318758 - 318774 + G 70 -5.8 -4.37886 | TGTTCTTTTCCTTAT TGGGGC AATTG GCTCCA TTTTATCAGGGATGG Aflv_0287 318714 - 319505 + | Predicted permease TERM 493 319502 - 319529 + F 88 -8.4 -4.78572 | opp_overlap 319496, overlap 319506 GTATGAAATGCTCGT GTAAGCTGGCTC GTTT GAGTCGGCTTTC TTTTGTTCATTGCAA TERM 494 319506 - 319525 + F 86 -7.8 -4.91657 | opp_overlap 319496, overlap 319502 GAAATGCTCGTGTAA GCTGGCTC GTTT GAGTCGGC TTTCTTTTGTTCATT TERM 495 320553 - 320506 - g 100 -12.2 -5.27335 | opp_overlap 320506 320519 GTTCCGAAAGAAAAA GCCGAACAAATGAGAACAGG GGAATGAG CCTGTTCTTTTTTGTTCGAC TATGCTACAATCTTG TERM 496 320506 - 320553 + G 83 -12.2 -2.8092 | opp_overlap 320506, overlap 320519 GTTCCGAAAGAAAAA GCCGAACAAATGAGAACAGG GGAATGAG CCTGTTCTTTTTTGTTCGAC TATGCTACAATCTTG Aflv_0288 319597 - 320532 + | Diacylglycerol kinase family enzyme TERM 497 320519 - 320540 + F 89 -5.9 -5.46657 | opp_overlap 320506, overlap 320506 AAGCCGAACAAATGA GAACAGG GGAATGAG CCTGTTC TTTTTTGTTCGACTA TERM 498 321117 - 321099 - g 78 -7.5 -4.46854 | TGATCCAACAAGAAA TGAACGA TATTG TCGTTCA GACGGTCAAACAAAT Aflv_0289 320597 - 321967 + | Methyltransferase TERM 499 322004 - 321985 - f 86 -7.9 -4.92363 | opp_overlap 321985 AAATATCGATAAAAA GGAAAGG GCGTCT CCTTTCC TTTTTCATTTGTGGT TERM 500 321985 - 322004 + F 90 -8.6 -5.05505 | opp_overlap 321985 AAATATCGATAAAAA GGAAAGGG CGTC TCCTTTCC TTTTTCATTTGTGGT TERM 501 322613 - 322634 + G 90 -5.9 -5.57396 | gap 1 CGGCTTGAAGATCGG TGCT-TCGTC ATC GACGACGGCA TTTTTTGTTACTTCT Aflv_0290 322140 - 323351 + | Permease of the major facilitator superfamily TERM 502 323607 - 323593 - g 74 -10 -3.15999 | TTGGGACATATCGAA GAAGCG TAT CGCTTC AAACGGTGAAAGAGC Aflv_0291 323388 - 324596 + | Uncharacterized conserved two domain fusion protein TERM 503 324627 - 324593 - T 100 -13.1 -3.95621 | opp_overlap 324599, overlap 324584 324599 ATTAAAGCTTATAAA GTAAAAGCAGTCC GCTCGTCTA GGACTGCTTTTAC GTTGGGGTGGCGATA TERM 504 324621 - 324599 - T 77 -6.3 -4.61873 | opp_overlap 324599, overlap 324584 324593 GCTTATAAAGTAAAA GCAGTCC GCTCGTCTA GGACTGC TTTTACGTTGGGGTG TERM 505 324599 - 324621 + T 71 -6.3 -4.2803 | opp_overlap 324584 324599 324593 GCTTATAAAGTAAAA GCAGTCC GCTCGTCTA GGACTGC TTTTACGTTGGGGTG Aflv_0292 325401 - 324664 - | Signal transduction protein (PAS, MCP domains) TERM 506 325689 - 325653 - H 76 -11.1 -2.71268 | overlap 325650 325663 TGTTACTATATAGTA GTACTCAATATTATTGA ATA CCAACAAGATTGAGTAC GTAGGAGGTGTTTTT padR 325666 - 326043 + | Predicted transcriptional regulator, PadR family TERM 507 326334 - 326320 - g 82 -8.6 -4.29369 | overlap 326315 GAAAAAAGAATTAAA GTTTCG CAG CGAAAC GACAAAGTCAGCTGA Aflv_0294 326021 - 326608 + | hypothetical protein TERM 508 326898 - 326858 - f 82 -7.8 -4.49556 | opp_overlap 326860 326866, overlap 326860 326866 TTTGCACGAAACAAA CATGAAAAGACAGCGA GCGCATGAT TCGCTGTCTTTTTATA TACTTAAAAAATAAA TERM 509 326860 - 326896 + F 77 -11.1 -2.90392 | opp_overlap 326858 326860 326866, overlap 326866 TGCACGAAACAAACA TGAAAAGACAGCGAG CGCATGA TTCGCTGTCTTTTTA TATACTTAAAAAATA TERM 510 326896 - 326860 - f 73 -8.2 -3.85603 | opp_overlap 326860 326866, overlap 326858 326866 TGCACGAAACAAACA TGAAAAGACAGCGA GCGCATGAT TCGCTGTCTTTTTA TATACTTAAAAAATA TERM 511 326866 - 326890 + F 88 -7.9 -5.04175 | opp_overlap 326860 326858 326866, overlap 326860 AAACAAACATGAAAA GACAGCGAG CGCATGA TTCGCTGTC TTTTTATATACTTAA TERM 512 326890 - 326866 - f 81 -7.2 -4.56802 | opp_overlap 326866 326860, overlap 326860 326858 AAACAAACATGAAAA GACAGCGA GCGCATGAT TCGCTGTC TTTTTATATACTTAA sigV 326980 - 327459 + | DNA-directed RNA polymerase specialized sigma subunit Aflv_0296 327446 - 328615 + | hypothetical protein TERM 513 328637 - 328613 - T 100 -15.9 -3.07443 | opp_overlap 328613 328617, overlap 328617 TTAGACCGCATCGAA TAAACGAGGGA GTT TCCCTCGTTTA TTTCGTTAAAATAAA TERM 514 328613 - 328637 + T 100 -15.9 -3.91911 | opp_overlap 328613 328617, overlap 328617 TTAGACCGCATCGAA TAAACGAGGGA GTT TCCCTCGTTTA TTTCGTTAAAATAAA TERM 515 328633 - 328617 - T 100 -12.3 -4.20783 | opp_overlap 328613 328617, overlap 328613 ACCGCATCGAATAAA CGAGGGA GTT TCCCTCG TTTATTTCGTTAAAA TERM 516 328617 - 328633 + T 100 -12.3 -4.56702 | opp_overlap 328617 328613, overlap 328613 ACCGCATCGAATAAA CGAGGGA GTT TCCCTCG TTTATTTCGTTAAAA Aflv_0297 329306 - 328635 - | Uncharacterized repeat-containing protein Aflv_0298 329546 - 330607 + | Nitric oxide synthase, oxygenase domain TERM 517 330608 - 330626 + F 93 -7.4 -5.47821 | opp_overlap 330608 330610 CGTCCTTATGAATGA CACCGC CGTTCAC GCGGTG TTTTTTTACATGAAT TERM 518 330725 - 330715 - f 73 -2.4 -5.31158 | GAAAAAAAGGAAAAA GGGG GGA CTCC AGTGGATTTTATTGA tlpB 330727 - 332208 + | Methyl-accepting chemotaxis protein TERM 519 332248 - 332211 - T 85 -8.6 -4.45577 | gap 1, opp_overlap 332213 332215 332219, overlap 332212 332215 ACAAATCGTATAAAA CGTAGAAAGCACCTCGA GAAAT TGGAGGTGCTTTCT-CA TATTGATGTTGTCTG TERM 520 332247 - 332212 - T 73 -9.9 -3.26262 | gap 1, opp_overlap 332213 332215 332219, overlap 332211 332215 CAAATCGTATAAAAC GTAGAAAGCACCTCGA GAAAT TGGAGGTGCTTTCT-C ATATTGATGTTGTCT TERM 521 332213 - 332248 + T 72 -9.2 -3.28842 | gap 1, opp_overlap 332212 332211 332215, overlap 332215 332219 AAATCGTATAAAACG T-AGAAAGCACCTCGAG AAA TTGGAGGTGCTTTCTCA TATTGATGTTGTCTG TERM 522 332245 - 332215 - T 83 -12.7 -2.80345 | opp_overlap 332213 332215 332219, overlap 332212 332211 ATCGTATAAAACGTA GAAAGCACCTCGA GAAAT TGGAGGTGCTTTC TCATATTGATGTTGT TERM 523 332215 - 332245 + T 90 -13.4 -2.81181 | opp_overlap 332215 332212 332211, overlap 332213 332219 ATCGTATAAAACGTA GAAAGCACCTCGAG AAA TTGGAGGTGCTTTC TCATATTGATGTTGT TERM 524 332219 - 332241 + T 79 -8.4 -4.07455 | opp_overlap 332215 332212 332211, overlap 332215 332213 TATAAAACGTAGAAA GCACCTCGAG AAA TTGGAGGTGC TTTCTCATATTGATG Aflv_0300 332858 - 332301 - | Stand-alone sensor domain protein TERM 525 332962 - 332945 - R 100 -9.1 -5.5943 | opp_overlap 332945 AAATCATGAAAAAAA GCAGGGA AGGT CCCCTGC TTTTGTCGAGAGCAA TERM 526 332945 - 332962 + r 85 -8.4 -4.36914 | opp_overlap 332945 AAATCATGAAAAAAA GCAGGG AAGGTC CCCTGC TTTTGTCGAGAGCAA TERM 527 332966 - 333024 + r 74 -9 -3.52111 | gap 1, opp_overlap 332978, overlap 332978 AAGGTCCCCTGCTTT TGTCGAGAGCAAGCACTTCGCGTCGAA AAGACG TTCGGCATGAAGTGCTTACCTTCG-CA TTATAGTCGTTTTGC TERM 528 332978 - 333013 + r 75 -10.5 -3.19513 | opp_overlap 332978, overlap 332966 TTTTGTCGAGAGCAA GCACTTCGCGTCGAA AAGACG TTCGGCATGAAGTGC TTACCTTCGCATTAT Aflv_0301 333489 - 333025 - | Cell wall-associated hydrolase (NlpC/P60 family) Aflv_0302 333739 - 334389 + | Membrane protein TerC ortholog TERM 529 334482 - 334511 + T 91 -6.4 -5.47821 | opp_overlap 334484, overlap 334483 334484 TGTGAATATACTTGA AAGGGCTATCTC CGTAAC GAGATAGCCCGA TTTTTTTAAATAAAT TERM 530 334483 - 334510 + T 83 -9.9 -3.87608 | opp_overlap 334484, overlap 334482 334484 GTGAATATACTTGAA AGGGCTATCTC CGTAAC GAGATAGCCCG ATTTTTTTAAATAAA TERM 531 334509 - 334484 - T 95 -13.4 -3.66883 | opp_overlap 334484 334483 334482 TGAATATACTTGAAA GGGCTATCTC CGTAAC GAGATAGCCC GATTTTTTTAAATAA TERM 532 334484 - 334509 + T 90 -13.4 -2.91842 | opp_overlap 334484, overlap 334483 334482 TGAATATACTTGAAA GGGCTATCTC CGTAAC GAGATAGCCC GATTTTTTTAAATAA Aflv_0303 337003 - 334517 - | Multidomain redox protein (NAD(FAD)-dependent oxidoreductase; Rhodanese domain; SirA-like redox domain; Peroxiredoxin domain) TERM 533 334875 - 334891 + g 73 -3.7 -5.055 | opp_overlap 334875 TTGAGACCCCAGAAT GTAAAGA ACA TCGTTAC TTTTTTACCCATTGC TERM 534 335063 - 335079 + g 72 -9.5 -3.22898 | opp_overlap 335063, overlap 335048 335061 CGTTTTATTTTCAAA CGTTGTT TTT AACAACG TATTGCCTGTTTTTT TERM 535 335079 - 335063 - G 76 -9.5 -3.57144 | opp_overlap 335048 335063 335061 CGTTTTATTTTCAAA CGTTGTT TTT AACAACG TATTGCCTGTTTTTT TERM 536 336476 - 336493 + g 76 -2.5 -5.32608 | TACCCCGATAAACCC GCCGCCG ATAA CGACCGC TTTTTTCGGTTTTTT Aflv_0304 337091 - 337855 + | Arginase family enzyme Aflv_0305 337953 - 338183 + | Fe2+ transport system protein A TERM 537 339025 - 339037 + G 70 -2.6 -5.07486 | AACGAATAAATATGT CGGC ATTCC GCTG TTTTTATTGGCGATG Aflv_0306 338180 - 340183 + | Fe2+ transport system protein B Aflv_0307 340198 - 340344 + | Uncharacterized conserved protein, contains CXXC motif TERM 538 340340 - 340355 + T 90 -9 -5.09895 | opp_overlap 340340 GTTGTCATGAAAAAA GCTGAC ATCA GTCAGC TTTTTTCAATAGATG TERM 539 340355 - 340340 - T 90 -9 -5.14563 | opp_overlap 340340 GTTGTCATGAAAAAA GCTGAC ATCA GTCAGC TTTTTTCAATAGATG Aflv_0308 340639 - 340361 - | Acylphosphatase TERM 540 341050 - 341038 - g 70 -7.7 -3.68359 | opp_overlap 341038, overlap 341032 GTGCCAAAAGGAGAA CATCG TAT CGATG TGTATCCAGCAGGAC Aflv_0309 340744 - 341484 + | hypothetical protein TERM 541 341487 - 341523 + T 71 -9.6 -2.79983 | opp_overlap 341492, overlap 341492 ATTAGAGTCATAAAT AAAAAGAGCTTTGATC GGAAG GGTCAAGGCTCTTTTC GTTGTTGCCGCTTTT TERM 542 341518 - 341492 - T 87 -5.1 -5.38958 | opp_overlap 341492 341487 AGTCATAAATAAAAA GAGCTTTGATC GGAAG GGTCAAGGCTC TTTTCGTTGTTGCCG TERM 543 341492 - 341518 + T 91 -9.5 -4.56133 | opp_overlap 341492, overlap 341487 AGTCATAAATAAAAA GAGCTTTGATC GGAAG GGTCAAGGCTC TTTTCGTTGTTGCCG Aflv_0310 342007 - 341510 - | Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) Aflv_0311 342719 - 342012 - | Sirohydrochlorin ferrochelatase TERM 544 342420 - 342451 + g 93 -2.4 -6.11019 | gap 1, overlap 342420 342421 TTGTACACCGAATGG T-TTTCCGTATGTGA TCG TCACAGAAGGAAACA TTTTTTTTGCTTTTT TERM 545 342639 - 342665 + g 78 -5.1 -5.05301 | opp_overlap 342639 342637 GGGTACCGAAGAAGA GAGGCGTTC AACAAAAGC GATCGCCTC TTTTTGTCCTTCTTT Aflv_0312 343506 - 342724 - | Uroporphyrinogen-III methylase TERM 546 342824 - 342837 + g 75 -2.3 -5.41143 | ATAATGATACTCGGG CTAGC AATC GCTTG TTTTTTTGCAACGTC Aflv_0313 344097 - 343507 - | Adenylylsulfate kinase Aflv_0314 345170 - 344094 - | ATP sulfurylase (sulfate adenylyltransferase) TERM 547 344233 - 344219 - G 70 -7.1 -3.90744 | TTGTGCCGGAAAGAA CGACG TGAGC CGTCG CATCATGAGGGCACG cysP 346261 - 345215 - | Sulfate permease TERM 548 345247 - 345266 + g 73 -3.5 -5.06451 | opp_overlap 345243 345247, overlap 345229 345238 GCTCGTGAAACGAAC GACGTTC CTCTGT GATCGTC TTTTTTAAGCTAATC cysH 346981 - 346274 - | 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase) Aflv_0317 347164 - 348141 + | c-di-GMP phosphodiesterase class II (HD-GYP domain) Aflv_0318 348354 - 348136 - | hypothetical protein Aflv_0319 348430 - 348900 + | Protein phosphatase, low molecular weight phosphatase family Aflv_0320 348911 - 349177 + | Uncharacterized conserved protein, involved in general stress response TERM 549 349778 - 349795 + G 72 -7.7 -3.75665 | overlap 349772 349768 CTATACGTTTTTGCA CCGAGCA AATA TGTTCGG TTTCGTGACGTCTGG Aflv_0321 349196 - 350029 + | Ribonuclease BN-like family enzyme TERM 550 350235 - 350213 - T 100 -17.8 -3.87323 | opp_overlap 350213, overlap 350194 TATCACTAAAGAGAA GAGGGATGCG GCA CGCATCCCTC TTTATTCTGCGATTT TERM 551 350213 - 350235 + T 100 -17.8 -4.33851 | opp_overlap 350213 350194 TATCACTAAAGAGAA GAGGGATGCG GCA CGCATCCCTC TTTATTCTGCGATTT Aflv_0322 350383 - 350237 - | hypothetical protein TERM 552 350401 - 350414 + r 77 -5.3 -4.98352 | TGATCGCTCTCCCCT CTGTT TTAA AACAG TTTATTTTGTTTAAT Aflv_0323 351621 - 350449 - | Permease of the major facilitator superfamily TERM 553 351001 - 350986 - G 74 -6.1 -4.57569 | TGATGCTTCTAAAAA GCCGT AACCAA ACGGC AACAACAAAGCTGGC TERM 554 351619 - 351607 - G 75 -3.3 -5.13016 | AACTAAAATGAAAAA GTGAC GTT GTCGC ATAATTCCCTCCTGT TERM 555 351760 - 351772 + H 100 -3.4 -6.09888 | AAAAGGAGACGATTG GATG GAACG CATC TTTTTTTTATTAACG TERM 556 351803 - 351819 + G 70 -7.3 -3.794 | GTCATCGGTGTTCCA CTTTCTG TTG CAGGAAG TTTACTACATTGGCC TERM 557 352135 - 352110 - g 71 -4.1 -4.89567 | gap 1 GTTTAAAATATAAAA GGCAATCATTTA ACG TATATGAT-GCC CGTCATAATTCAGGG Aflv_0324 351761 - 352810 + | Ca2+/H+ antiporter TERM 558 352811 - 352832 + F 100 -8.7 -5.93809 | TTTTATTTGTTGTAA TCCGTCAGT TATT GCTGGCGGA TTTTTTTTATAAGGA Aflv_0325 352822 - 353688 + | hypothetical protein TERM 559 353685 - 353733 + T 90 -8.4 -5.0925 | gap 1, opp_overlap 353698, overlap 353689 353698 TAGCGACGTACCACG ATG-ACAAGAAAAAGCTTGTCGA GCGT TCGACAAGCTTTTTATCGTTCAA TTTTTGCTTTTCGCG TERM 560 353689 - 353728 + T 95 -13.8 -3.49728 | opp_overlap 353698, overlap 353685 353698 GACGTACCACGATGA CAAGAAAAAGCTTGTCGA GCGT TCGACAAGCTTTTTATCG TTCAATTTTTGCTTT TERM 561 353698 - 353719 + T 100 -13.1 -4.98857 | opp_overlap 353698, overlap 353689 353685 CGATGACAAGAAAAA GCTTGTCGA GCGT TCGACAAGC TTTTTATCGTTCAAT TERM 562 353719 - 353698 - T 100 -13.1 -5.22006 | opp_overlap 353698 353689 353685 CGATGACAAGAAAAA GCTTGTCGA GCGT TCGACAAGC TTTTTATCGTTCAAT Aflv_0326 354853 - 353723 - | Radical SAM superfamily enzyme Aflv_0327 354951 - 355154 + | hypothetical protein TERM 563 355137 - 355170 + F 72 -8.3 -3.54129 | gap 1, opp_overlap 355147, overlap 355138 355147 355160 CGGTTTAAAAAAGAT TG-GGAAAAAAGTCGC TAA GCGGCTTTTTTTCGCG TTTGAAAAAGATGTA TERM 564 355138 - 355169 + F 70 -9.6 -2.72263 | gap 1, opp_overlap 355147, overlap 355137 355147 355160 GGTTTAAAAAAGATT G-GGAAAAAAGTCGC TAA GCGGCTTTTTTTCGC GTTTGAAAAAGATGT TERM 565 355147 - 355159 + F 93 -6.9 -5.49809 | opp_overlap 355147, overlap 355138 355137 AAGATTGGGAAAAAA GTCGC TAA GCGGC TTTTTTTCGCGTTTG TERM 566 355159 - 355147 - f 76 -4.7 -5.04987 | opp_overlap 355147 355138 355137 AAGATTGGGAAAAAA GTCGC TAA GCGGC TTTTTTTCGCGTTTG TERM 567 355228 - 355211 - f 73 -2.1 -5.1925 | gap 1 GGAGAATTCAAAAAA TTGTTACA TAT TG-AACAA AGGGGAAGGGAATCG Aflv_0328 355267 - 356769 + | Fumarate hydratase class I, aerobic TERM 568 356776 - 356800 + G 100 -8.6 -5.46276 | opp_overlap 356776 GTATTTTAATGGAAA TCCGTCTAGT GATGA GCTAGGCGGA TTTTTTATATCTCTT TERM 569 356860 - 356887 + G 75 -2.2 -5.28983 | gap 1 GGAGGTGCAAGCAGT GAAAAAAA-CGAT CAT GTTGCTTTTTTTC TTTTTATGTTTTCCG Aflv_0329 356759 - 357637 + | Polysaccharide deacetylase TERM 570 357629 - 357652 + F 88 -9 -4.59982 | gap 1, overlap 357645 CCTACTTGGCTTTTT TCCCTTTG-AC GAT GTGCAAAGGGA TTTGTTTCGTTATAA TERM 571 357828 - 357873 + G 82 -4.9 -5.29445 | opp_overlap 357827 357822 357864 TACATAAATGAAACT CCGGTTGCTGTTTCTG-TCCG CAGTAT CGGAACA-AAACAAGAACCGG TTTTTCTTGTTGAAG Aflv_0330 357642 - 358559 + | 3-methyladenine DNA glycosylase TERM 572 358710 - 358693 - g 71 -7 -4.15044 | opp_overlap 358692 TTCCGGGGGAAGAAA TCGTCG TTCAGG CGACGA ATGTGTATCCGACGT TERM 573 359085 - 359066 - g 86 -12.2 -3.08679 | overlap 359078 CTGCTTGATTCAACA TGACGCGA CTAA TCGCGTCA CAACGGTCGTGAAAG TERM 574 359340 - 359320 - g 78 -5.4 -5.055 | opp_overlap 359336 TTAACGGGCAAAAAA CGTCGC TTATTTTTG GCGACG AAACGATCGTTCTTG TERM 575 359532 - 359492 - g 82 -6.6 -4.7497 | opp_overlap 359490 359496 CGCACTCACGAAAAA CGAACGTGTCGTCGATGC GTATT GCGGCGTCGGCACGATCG GGCTTTGGCTTGCCC Aflv_0331 358572 - 359930 + | tRNA (Uracil-5-)-methyltransferase fused to TRAM domain Aflv_0332 359940 - 360416 + | NUDIX family hydrolase Aflv_0333 363572 - 360393 - | N-terminal HKD family nuclease fused to DNA/RNA helicase domain TERM 576 361362 - 361377 + g 71 -4.7 -4.66953 | ATCTAATATTTCTGG TGAGC GCCCAA GCTCA TTTTTAAACTGTTGA TERM 577 362770 - 362749 - G 74 -9.5 -3.30441 | opp_overlap 362748 362749 362753, overlap 362753 AATGCATAATCAAGA GAAATCGTG TCCG CACGATTCC ATATTTTTTCGAACA TERM 578 362766 - 362753 - G 74 -6.7 -4.29327 | opp_overlap 362749 362748 362753, overlap 362749 CATAATCAAGAGAAA TCGTG TCCG CACGA TTCCATATTTTTTCG TERM 579 364755 - 364742 - g 84 -5.3 -5.31855 | GACGAAGAAGAAAAA GCAAT CGAG ATTGC GCAAAAAGTCATTGA TERM 580 365213 - 365227 + G 74 -7 -4.37886 | CCTGAACCATCTGAT CGGCCG TAT CGGACG TTTTGTGGGACGTAA Aflv_0334 363800 - 365242 + | Uncharacterized conserved protein, YdiU/UPF0061 family TERM 581 365247 - 365265 + F 88 -8.9 -4.62069 | opp_overlap 365247 GTGGGACGTAAAAAA GCTCAAG GGTCA CTTGAGC TTTTTAAAATCCAGC TERM 582 365265 - 365247 - f 90 -8.9 -5.08824 | opp_overlap 365247 GTGGGACGTAAAAAA GCTCAAG GGTCA CTTGAGC TTTTTAAAATCCAGC TERM 583 366236 - 366226 - g 71 -3.2 -4.94058 | overlap 366227 GCAAGCTAAAGAAAA TCGC TGG GCAA GAAAACCGTTTCATG Aflv_0335 365427 - 366644 + | Transposase TERM 584 366924 - 366909 - g 78 -4 -5.1285 | AAAAAATAAAATAAA CGTCAT TGAA ATAACG CATGAACATATTGCG Aflv_0336 366829 - 367077 + | Transcriptional regulator, Crp family Aflv_0337 367110 - 367334 + | hypothetical protein TERM 585 367385 - 367364 - T 100 -12.3 -4.15396 | opp_overlap 367364, overlap 367367 GTTGAAATCAAATAA GAAGGCGCC CATA GACGCCTTC TTTTAATCTACTTTT TERM 586 367364 - 367385 + T 90 -10.1 -4.41797 | opp_overlap 367364 367367 GTTGAAATCAAATAA GAAGGCGCC CATA GACGCCTTC TTTTAATCTACTTTT TERM 587 367382 - 367367 - T 77 -8.2 -4.18294 | opp_overlap 367364, overlap 367364 GAAATCAAATAAGAA GGCGCC CATA GACGCC TTCTTTTAATCTACT adhA 368449 - 367388 - | Zn-dependent alcohol dehydrogenase TERM 588 367466 - 367485 + g 74 -4.3 -5.01042 | GTTAATGTTTTCAAG CGGTTGT ACTTCG ACAATCG TTTTTACTTTGCCTT TERM 589 368721 - 368747 + H 76 -6.7 -4.34402 | ATGCCAGCCAGTTGC CCTTCTTATAA GGAAA TGATAAGAAGG TTTTACTGTCGAACG TERM 590 368766 - 368793 + H 93 -7 -5.42605 | opp_overlap 368766 TACTGTCGAACGATA GCTGCCTATATA TTTG TTTTTAGGCAGC TTTTATTTTTATTAA TERM 591 369338 - 369324 - g 77 -3.6 -5.10461 | GCGATTCAACAAAAA CATTTA CAA CAAATG AGTGAAACATTGTCT TERM 592 369968 - 369954 - g 70 -2.8 -5.04222 | GAACTAAATGAAAAA TCCG CACAAAT CGGA AAAATCGTTGATGTG tlpA-1 368829 - 370520 + | Chemotaxis sensor protein (CHASE 3, HAMP, MCP domains) TERM 593 370526 - 370584 + T 89 -9.1 -4.71463 | gap 1, opp_overlap 370536 370537 370542, overlap 370502 370533 370537 CAAATTTTGAAGTGT G-CATCTATAAGGAAAAGGTGTCCTGAG AACT TTCGGGACACCTTCTCTTTATTTATGAC TTTCTTCTTTTACTT TERM 594 370533 - 370576 + T 100 -14.8 -4.05926 | opp_overlap 370536 370537 370542, overlap 370526 370537 TGAAGTGTGCATCTA TAAGGAAAAGGTGTCCTGAG AACT TTCGGGACACCTTCTCTTTA TTTATGACTTTCTTC TERM 595 370573 - 370536 - T 72 -9.2 -3.35798 | opp_overlap 370533 370526 370537, overlap 370537 370542 AGTGTGCATCTATAA GGAAAAGGTGTCCTGA GAACTT TCGGGACACCTTCTCT TTATTTATGACTTTC TERM 596 370537 - 370572 + T 100 -13.4 -4.59993 | opp_overlap 370536 370537 370542, overlap 370533 370526 GTGTGCATCTATAAG GAAAAGGTGTCCTGAG AACT TTCGGGACACCTTCTC TTTATTTATGACTTT TERM 597 370572 - 370537 - T 83 -12.7 -2.61264 | opp_overlap 370537 370533 370526, overlap 370536 370542 GTGTGCATCTATAAG GAAAAGGTGTCCTGA GAACTT TCGGGACACCTTCTC TTTATTTATGACTTT TERM 598 370567 - 370542 - T 88 -9 -4.50058 | opp_overlap 370537 370533 370526, overlap 370537 370536 CATCTATAAGGAAAA GGTGTCCTGA GAACTT TCGGGACACC TTCTCTTTATTTATG Aflv_0340 370766 - 370578 - | hypothetical protein Aflv_0341 370968 - 370840 - | hypothetical protein TERM 599 370917 - 370934 + g 100 -7.7 -5.75538 | CATACGTCACTTCTT GTGCGCT CGAG AGCGTAC TTTTTGTTTTTTCAC TERM 600 371061 - 371043 - R 100 -8.9 -5.65927 | opp_overlap 371039 TATCCAAATAAAAAA CCTGTTC GTGCA GAACAGG TTACGCTTCTTTTAA Aflv_0342 371634 - 371062 - | Acetyltransferase, RimL family TERM 601 371351 - 371361 + g 71 -6.8 -4.08394 | TGGTTATATCCTTTG CCGT GAT ACGG TTTTCCAAGCCATGT TERM 602 371723 - 371665 - R 72 -9.9 -3.06796 | gap 1, opp_overlap 371681, overlap 371668 371681 GTCGACCGCAGGGAA CGAGCCAC-CCTCGAAATTTTTTAATTT ATGC AAATCAAAAAATTTCGGGGTGGGAATCG AACCCACTAGAACCA TERM 603 371718 - 371668 - R 100 -15.9 -2.75382 | gap 1, opp_overlap 371681, overlap 371665 371681 GACCGCAGGGAACGA GCCACCCTCGAAATTTTTTAATTT ATGC AAATCAAAAAATTTCG-GGGTGGG AATCGAACCCACTAG TERM 604 371750 - 371736 - R 79 -10 -3.44319 | opp_overlap 371748 TCGAACCCACTAGAA CCAGCA CGT TGCTGG TGGCGCACCATTTGC TERM 605 371748 - 371760 + r 70 -7.7 -3.78409 | opp_overlap 371736 GAACCAGCACGTTGC TGGTG GCG CACCA TTTGCCTTCCCTTAC hutI 372983 - 371856 - | Imidazolone-5-propionate hydrolase TERM 606 372563 - 372573 + g 78 -4 -5.14477 | GTTGTTTGATGATCA TGTT TTC AACA TTTTTTCCATATGTC Aflv_0344 373932 - 373024 - | NAD dependent epimerase/dehydratase family enzyme Aflv_0345 373878 - 374801 + | Uncharacterized conserved protein, RecX family TERM 607 374814 - 374786 - TR 80 -8.2 -4.39002 | opp_overlap 374792, overlap 374792 AAAGTTTTTAGAAAA GAAAAAGGAGGA TTAAC TCCTCCTATTCC ACGATGATTTCAGCT TERM 608 374808 - 374792 - TR 100 -8 -5.54907 | opp_overlap 374792, overlap 374786 TTTAGAAAAGAAAAA GGAGGA TTAAC TCCTCC TATTCCACGATGATT Aflv_0346 375485 - 374808 - | Short-chain alcohol dehydrogenase TERM 609 376567 - 376556 - g 73 -3.6 -5.055 | CGAACGTGCAAAAAA GCGA CATG CCGC TTTTGCTTGCATGGA TERM 610 376860 - 376873 + G 71 -2.3 -5.12068 | overlap 376847 376848 376861 GCTCGGAACAGCGGT GCCGA TGGT TCGGA TTTTTATTAACTCTG Aflv_0347 375592 - 377280 + | L-lactate permease Aflv_0348 377325 - 377654 + | hypothetical protein TERM 611 377636 - 377682 + T 86 -7.6 -5.04222 | gap 1, opp_overlap 377647, overlap 377647 GTTGCCTATTTCATT ATTAAAGA-AAAGAGGTTGAC ACGAGC GTCAACCTCTTTCTCATTAAA TTTTTCGTTTGCTTA TERM 612 377670 - 377647 - T 100 -11.8 -4.95484 | opp_overlap 377636 377647 CATTATTAAAGAAAA GAGGTTGACA CGAG CGTCAACCTC TTTCTCATTAAATTT TERM 613 377647 - 377670 + T 88 -11.1 -4.08578 | opp_overlap 377647, overlap 377636 CATTATTAAAGAAAA GAGGTTGAC ACGAGC GTCAACCTC TTTCTCATTAAATTT Aflv_0349 377842 - 377678 - | hypothetical protein sspK 378011 - 377844 - | Small, acid-soluble spore protein K TERM 614 377910 - 377924 + g 75 -7.1 -4.30809 | opp_overlap 377909 AGGGTGCGTATTAAT CGTGC CGTTT GCACG TTTTGATGCGTATTC Aflv_0351 379072 - 378095 - | Membrane-bound metal-dependent hydrolase TERM 615 378686 - 378698 + g 77 -4.7 -5.00616 | TGTATTGATGATACC GAGGG CGA CCCAC TTTTTTGAAAAAGGA mutY 379095 - 380216 + | A/G-specific adenine glycosylase TERM 616 380237 - 380208 - T 100 -18.1 -2.76651 | opp_overlap 380200, overlap 380200 380210 AAAATATGGCAAGCA TACGAGTAAAGGC ATAT GCCTTTACTCGTA AAATACTCGTGTTCC TERM 617 380235 - 380210 - T 100 -16.3 -2.92018 | opp_overlap 380200, overlap 380208 380200 AATATGGCAAGCATA CGAGTAAAGGC ATAT GCCTTTACTCG TAAAATACTCGTGTT Aflv_0353 380462 - 380229 - | hypothetical protein sspE 380501 - 380704 + | Small acid-soluble spore protein (gamma-type SASP) TERM 618 380707 - 380743 + F 73 -9.5 -3.20435 | opp_overlap 380713, overlap 380713 GAAAAATCAATAACG GGCAAAGGGCATCGG TTTTCGT CCGATGCTCTTTTTC TTCCTCGCTGATTAA TERM 619 380713 - 380737 + F 90 -9.3 -5.14163 | opp_overlap 380713, overlap 380707 TCAATAACGGGCAAA GGGCATCGG TTTTCGT CCGATGCTC TTTTTCTTCCTCGCT Aflv_0355 380804 - 381334 + | Uncharacterized domain associated with RNAses G and E TERM 620 381360 - 381385 + F 100 -3.3 -6.07374 | opp_overlap 381360 TACATGGATCAAAAA CAACGGTTA GCTACTTG TCACCGTTG TTTTTTATTTTTTGT appD 381461 - 382540 + | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component TERM 621 383454 - 383504 + GF 83 -10.7 -3.57185 | gap 1, opp_overlap 383498, overlap 383452 383456 GAAGTTGAACAAGGG CATTACGTCGCTT-GCCATCTTTA TACA TAAGGATGGCTAAGCGATGAAATA TATTATTTCACTAAG TERM 622 383456 - 383502 + GF 100 -13.3 -3.35723 | gap 1, opp_overlap 383498, overlap 383454 383452 AGTTGAACAAGGGCA TTACGTCGCTT-GCCATCTTTA TACA TAAGGATGGCTAAGCGATGAAA TATATTATTTCACTA appF 382491 - 383483 + | ABC-type oligopeptide transport system, ATPase component TERM 623 383821 - 383807 - g 77 -6.4 -4.63527 | GCATTAGCGGAAAAA TGGGAA GTT TCCCCA GATGGACTTACGTAT TERM 624 384160 - 384145 - g 76 -7.6 -4.10453 | TAAATTTGGTGAAAA TCCTGT TGGA ACAGGA CCATTCGTCTTTAAA oppA 383531 - 385135 + | ABC-type dipeptide transport system, periplasmic component TERM 625 385148 - 385170 + G 90 -11.3 -3.70149 | TAATCGTTGTGTTGA GGGAGGGGA GGGAA TCCTCTCCC TTTCCATCATGTGAG TERM 626 385613 - 385630 + G 78 -4.1 -5.16572 | overlap 385615 385626 TGGTGTTAGCGTTAG TTGGCGT TTCG ATGCCGA TTTTTTGGCTTGGGT TERM 627 385916 - 385898 - g 70 -9.6 -2.79831 | TGAAGTCCGATTATA TTCGCACA GCA CGTGCGAA AGGATTAAGCATGTT appB 385141 - 386205 + | ABC-type dipeptide/oligopeptide/nickel transport system, permease component TERM 628 386663 - 386676 + G 76 -8.1 -4.08945 | opp_overlap 386662 TATTTTGTTAGCAAT CGGCA TCGT TGCCG TTTTAGGACCGTCGT appC 386220 - 387113 + | ABC-type dipeptide/oligopeptide/nickel transport system, permease component TERM 629 387112 - 387148 + T 93 -12.5 -4.13244 | opp_overlap 387117, overlap 387117 CACGCATGAAAAGCT AAAAAGATGTCCCGA GACGCAG TCGGGACATCTTTTA TTCTTGTTCTTCTGG TERM 630 387117 - 387143 + T 100 -12.4 -5.01823 | opp_overlap 387117, overlap 387112 ATGAAAAGCTAAAAA GATGTCCCGA GACGCAG TCGGGACATC TTTTATTCTTGTTCT TERM 631 387143 - 387117 - T 100 -12.4 -4.88222 | opp_overlap 387112 387117 ATGAAAAGCTAAAAA GATGTCCCGA GACGCAG TCGGGACATC TTTTATTCTTGTTCT Aflv_0361 388228 - 387146 - | hypothetical protein TERM 632 388363 - 388308 - R 100 -13.6 -5.5353 | opp_overlap 388308 388315 388323, overlap 388309 388315 TATATCAAGAAAAAA GGAAAAACATTAAAAGAACTGCCTCA TTTT CGAGACAGTTCTTTTTATGTTTATTC TGTTGACACCGATGG TERM 633 388308 - 388363 + r 91 -12.9 -3.02144 | opp_overlap 388308 388309 388315, overlap 388315 388323 TATATCAAGAAAAAA GGAAAAACATTAAAAGAACTGCCTC ATTTTC GAGACAGTTCTTTTTATGTTTATTC TGTTGACACCGATGG TERM 634 388363 - 388309 - R 100 -15.5 -3.90491 | gap 1, opp_overlap 388308 388315 388323, overlap 388308 388315 ATATCAAGAAAAAAG GAA-AAACATTAAAAGAACTGCCTCA TTTT CGAGACAGTTCTTTTTATGTTTATTC TGTTGACACCGATGG TERM 635 388315 - 388356 + r 95 -11.8 -4.46073 | opp_overlap 388315 388308 388309, overlap 388308 388323 AGAAAAAAGGAAAAA CATTAAAAGAACTGCCTC ATTTTC GAGACAGTTCTTTTTATG TTTATTCTGTTGACA TERM 636 388356 - 388315 - R 100 -14.7 -5.27769 | opp_overlap 388308 388315 388323, overlap 388308 388309 AGAAAAAAGGAAAAA CATTAAAAGAACTGCCTCA TTTT CGAGACAGTTCTTTTTATG TTTATTCTGTTGACA TERM 637 388323 - 388348 + r 90 -7.6 -5.28414 | opp_overlap 388315 388308 388309, overlap 388315 388308 GGAAAAACATTAAAA GAACTGCCTC ATTTTC GAGACAGTTC TTTTTATGTTTATTC gltA-2 392830 - 388358 - | Glutamate synthase large subunit TERM 638 392492 - 392503 + g 100 -3.6 -6.09888 | CTGAGCAAACAATTG GCGC ATAC GTGC TTTTTTTTCTTCCAC TERM 639 392574 - 392559 - G 82 -7.6 -4.5442 | overlap 392545 TGGCCAACGATAAAA TCGTTG CGGT CAACGA GTTGAGGATCGAGAT TERM 640 392589 - 392602 + g 75 -2.3 -5.27335 | AGTTGAGGATCGAGA TGGGC AGCA GCCAA TTTTTCTTTCCAAAG TERM 641 393078 - 393051 - R 82 -4.2 -5.40072 | opp_overlap 393051 TTTTCCGTAAAAAAA CGAGATGG GGAACATATATA CCATCTCG TTATATTTGTATATT gsaB 394460 - 393093 - | Glutamate-1-semialdehyde aminotransferase TERM 642 393312 - 393323 + g 70 -5.8 -4.31379 | opp_overlap 393311 TGTCGTAAAGTATAC GGTG AGCG CACC TTTTAGTCGGTTAAT TERM 643 394462 - 394476 + H 78 -7.2 -4.42238 | TTTGAGCACACCATT TGTTGA GTT TCAACA TTTTCGTTACACTAG Aflv_0364 394513 - 395517 + | ABC-type uncharacterized transport system, ATPase component Aflv_0365 395456 - 396301 + | ABC-type uncharacterized transport system, permease component Aflv_0366 396306 - 397091 + | ABC-type uncharacterized transport system, permease component TERM 644 397133 - 397098 - gf 79 -5.5 -4.99947 | opp_overlap 397098 GGGAATTAAATAAAA CATCCCCTCGTAT ATATAAAGGA ACAGGAGGGGATG TTGTGACGTATGTAT Aflv_0367 397049 - 397534 + | Ion transport protein TERM 645 397868 - 397858 - g 81 -4 -5.33026 | GAAGTTAAAGAAAAA CTTT GGG AAAG AGTATATGGGGATTG Aflv_0368 397547 - 398008 + | Peroxiredoxin TERM 646 398061 - 398084 + F 85 -3.8 -5.63517 | overlap 398062 CCTCAAAGATGTATG CGGTGATTCT GCGT AGAGTCGCCC TTTTTTCTTTCCGGA TERM 647 398062 - 398083 + F 73 -7.3 -3.97026 | overlap 398061 CTCAAAGATGTATGC GGTGATTCT GCGT AGAGTCGCC CTTTTTTCTTTCCGG perR 398178 - 398636 + | Peroxide regulon repressor PerR, fur family TERM 648 398664 - 398641 - T 93 -11.1 -4.69664 | opp_overlap 398641 GACATCATTGAAAAA GCTGATAGC ACTGGA GCTATCAGC TTTTTTTGTCTCTCG TERM 649 398641 - 398664 + T 100 -11.1 -5.76633 | opp_overlap 398641 GACATCATTGAAAAA GCTGATAGC ACTGGA GCTATCAGC TTTTTTTGTCTCTCG Aflv_0370 399022 - 398660 - | Membrane-associated metal-binding protein TERM 650 399236 - 399247 + G 73 -5.8 -4.57787 | AGGATCGGATTATTC TCCG GAGA CGGA TTTATTTGATGTTAT Aflv_0371 399129 - 400016 + | hypothetical protein TERM 651 400382 - 400367 - T 72 -9 -3.32343 | overlap 400378 TGTAGACGGGGATAA CACCGA GAAA TCGGTG CTAATACCGGATAAC TERM 652 401492 - 401480 - T 73 -7.7 -3.86194 | AATGGGCGGTACAAA GGGTT GCG AACCC GCGAGGGGGAGCCAA TERM 653 401819 - 401801 - T 73 -10.4 -2.85909 | AAAAGCGGAGAACGA TTCTTGAC GTA GTCAAGAA AACATCCGACGGAAG TERM 654 401854 - 401822 - T 74 -4.8 -4.68384 | gap 1, overlap 401825 401834 401853 ACGTAGTCAAGAAAA CATC-CGACGGAAGC GCAA GCTTTCGACGAGACG TGCGTGCACGTCGAC TERM 655 401992 - 402008 + T 82 -8.7 -4.23486 | overlap 401989 401993 CGCTTCGTTTAGTTT TGAGGGA ATA TCCCTCG TTATTTTAGCTGATT TERM 656 401993 - 402007 + T 75 -10 -3.13007 | overlap 401992 401989 GCTTCGTTTAGTTTT GAGGGA ATA TCCCTC GTTATTTTAGCTGAT TERM 657 402412 - 402393 - T 89 -12.2 -3.66803 | opp_overlap 402392 402391 CGGGAACAGCCCAAA CCAAGAGG CTTG CCTCTTGG GGTTGTAGGACACTC TERM 658 403449 - 403431 - T 71 -6 -4.21194 | overlap 403435 TGTGAGTAGCGAAAA CAGAGG TGAGAAT CCTCTG CACCGAAAGCCTAAG TERM 659 403945 - 403932 - T 72 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GTCT CTGCG AAGCCGTAAGGCGAA TERM 660 406120 - 406100 - T 75 -9.7 -3.31263 | overlap 406102 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAGT TERM 661 406118 - 406102 - T 79 -10.9 -3.22475 | overlap 406100 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 662 407613 - 407574 - T 100 -19.6 -3.14931 | opp_overlap 407579, overlap 407579 CGTACGGGTCACTAA TAAAAGTAGGGCTAACCT TGCA AGGTTAGCCCTACTTTTT TGTATTAGATGCATC TERM 663 407608 - 407579 - T 100 -19.5 -4.71426 | opp_overlap 407579, overlap 407574 GGGTCACTAATAAAA GTAGGGCTAACCT TGCA AGGTTAGCCCTAC TTTTTTGTATTAGAT TERM 664 407579 - 407608 + T 100 -19.5 -5.48063 | opp_overlap 407579 407574 GGGTCACTAATAAAA GTAGGGCTAACCT TGCA AGGTTAGCCCTAC TTTTTTGTATTAGAT czcD 408624 - 407650 - | Co/Zn/Cd efflux system component TERM 665 408252 - 408236 - G 74 -6.5 -4.57209 | overlap 408237 AGATTAACGACAAAA CCGATCG TTG CGATCGT TAACATGAGTGAAAA TERM 666 408251 - 408237 - G 76 -10 -3.33241 | overlap 408236 GATTAACGACAAAAC CGATCG TTG CGATCG TTAACATGAGTGAAA TERM 667 410370 - 410389 + GH 80 -6.5 -4.82901 | CGAAAAATGGATGAT TACGTGA AATCCC TCACGTA TTTTTATAAAAAACA glgB 408879 - 410825 + | 1,4-alpha-glucan branching enzyme TERM 668 411116 - 411102 - gf 70 -5.8 -4.2828 | CGCGATTTATCAAAA TCTAAA CTA TTTAGA GCAATACGATCCGGA glgC 410722 - 411945 + | Glucose-1-phosphate adenylyltransferase glgD 411933 - 412955 + | ADP-glucose pyrophosphorylase TERM 669 413050 - 413036 - g 70 -5.7 -4.25104 | GGTGCGCTACCAAAA GAGCT GAAAA AGCTC GGAACCGATGTGCGT TERM 670 413358 - 413371 + G 71 -2.3 -5.10461 | opp_overlap 413360 GTCATGATTGGCATA CAGGA ATGA TCCCG TTTTTGTTGCGTGAA TERM 671 413636 - 413622 - g 84 -10 -3.78449 | AAGAAGAGATTCAAA CACCGT ATT ACGGTG AGCGGCTTGACGGAC glgA 412952 - 414406 + | Glycogen synthase TERM 672 415756 - 415738 - g 75 -5.3 -4.90079 | gap 1, opp_overlap 415738 415751, overlap 415742 AGTTTAATAATAAAA CGAATGGG ATTA CCCAT-CG TCGTTGGTTGCTGAA glgP 414384 - 416780 + | Glucan phosphorylase TERM 673 416819 - 416788 - T 93 -8 -5.5112 | opp_overlap 416791 416818, overlap 416789 416791 TTCACTAATAAAAAA TCAGTCCTGTAAGC ATAT GCTCACAGGACTTT CTTATGAAGTATAAG TERM 674 416818 - 416789 - T 90 -11.5 -3.89587 | opp_overlap 416791, overlap 416788 416791 TCACTAATAAAAAAT CAGTCCTGTAAGC ATAT GCTCACAGGACTT TCTTATGAAGTATAA TERM 675 416791 - 416816 + T 95 -11.9 -4.32579 | opp_overlap 416789 416788 416791 ACTAATAAAAAATCA GTCCTGTAAGC ATAT GCTCACAGGAC TTTCTTATGAAGTAT TERM 676 416816 - 416791 - T 100 -14.1 -3.51774 | opp_overlap 416791, overlap 416789 416788 ACTAATAAAAAATCA GTCCTGTAAGC ATAT GCTCACAGGAC TTTCTTATGAAGTAT dksA 417552 - 416821 - | DnaK suppressor protein TERM 677 417634 - 417602 - R 74 -5.1 -4.75372 | gap 1, opp_overlap 417609, overlap 417609 AGTATGGACTAAAAA GAAAAAACCATAGC GCCAAG ACTATGGTTTTT-C TTAACAATTATTGCA TERM 678 417609 - 417628 + r 72 -3.6 -5.08088 | opp_overlap 417602 417609 ACTAAAAAGAAAAAA CCATAG CGCCAAGA CTATGG TTTTTCTTAACAATT TERM 679 417628 - 417609 - R 100 -4.3 -5.95286 | opp_overlap 417609, overlap 417602 ACTAAAAAGAAAAAA CCATAGC GCCAAG ACTATGG TTTTTCTTAACAATT menA 418577 - 417642 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 680 418236 - 418220 - G 79 -7.9 -4.40003 | TGGCACAAATATAAA CGCCAAG CAA CATGGCG ATAGCGAAAAAAGAC TERM 681 418260 - 418270 + g 73 -5.4 -4.7373 | opp_overlap 418260 AAAAGACCAAGCAAG CAGT AAA ACTG TTTTTGGTGAGATGC menF 418735 - 420090 + | Menaquinone-specific isochorismate synthase TERM 682 421293 - 421313 + G 76 -2.5 -5.39721 | overlap 421281 421295 GTTGGCAACAGTATG CCTATTCGT GAT GCGGATACG TTTTTTATGTCATCG menD 420081 - 421826 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Aflv_0382 421823 - 422650 + | Alpha/beta superfamily hydrolase menB 422640 - 423458 + | Dihydroxynaphthoic acid synthase TERM 683 423468 - 423493 + F 100 -14.9 -5.42259 | opp_overlap 423468 CCATAAAAATAAAAA CAGCTTGATGT GTAT ACATCAAGCTG TTTTTTTGAAGGTGG TERM 684 423493 - 423468 - f 100 -14.9 -5.69262 | opp_overlap 423468 CCATAAAAATAAAAA CAGCTTGATGT GTAT ACATCAAGCTG TTTTTTTGAAGGTGG menE 423477 - 424943 + | O-succinylbenzoic acid-CoA ligase TERM 685 424930 - 424978 + T 82 -7.8 -4.56802 | gap 2, opp_overlap 424941 424944, overlap 424941 424944 ATAAGTTGAAAAACT GGATCAATGAATAAGAGGAGGC AGCCAAC GCCTCCTCTTATTGA-T-ATCC TTTTGCTGTTTCTTT TERM 686 424941 - 424969 + T 93 -13.3 -3.37531 | opp_overlap 424941 424944, overlap 424930 424944 AACTGGATCAATGAA TAAGAGGAGGC AGCCAAC GCCTCCTCTTA TTGATATCCTTTTGC TERM 687 424969 - 424941 - T 95 -14 -3.40639 | opp_overlap 424941 424930 424944, overlap 424944 AACTGGATCAATGAA TAAGAGGAGGCA GCCAA CGCCTCCTCTTA TTGATATCCTTTTGC TERM 688 424944 - 424966 + T 86 -10.6 -3.80452 | opp_overlap 424941 424944, overlap 424941 424930 TGGATCAATGAATAA GAGGAGGC AGCCAAC GCCTCCTC TTATTGATATCCTTT TERM 689 424966 - 424944 - T 90 -11.3 -3.83844 | opp_overlap 424944 424941 424930, overlap 424941 TGGATCAATGAATAA GAGGAGGCA GCCAA CGCCTCCTC TTATTGATATCCTTT cydB 426049 - 424967 - | Cytochrome bd-type quinol oxidase, subunit 2 TERM 690 425428 - 425391 - GT 70 -8.3 -3.38991 | overlap 425389 ACCGTTGCAATAATA GCAGCAGGGCGCGCG ACTGCATA CGCTCGCTCCGCTAC CTCTCCAACCGCTTT cydA 427388 - 425985 - | Cytochrome bd-type quinol oxidase, subunit 1 TERM 691 426808 - 426792 - GR 75 -9.5 -3.40371 | opp_overlap 426791 426790 426794 GACGGTATGAACGAA CATATGC CAT GCATATG GATTTGTTACCACTT TERM 692 427349 - 427359 + gr 81 -4 -5.25893 | TAAGTCCCCCTCCAA CATT CAA AATG TTTTTTACTATGTAT TERM 693 427483 - 427507 + r 86 -10 -4.12315 | opp_overlap 427485, overlap 427485 CATGAAAAAGTGGAA AACCCCTTGC GACAG GCAAGGGGTG TTTAGTTATTCGTTT TERM 694 427485 - 427505 + r 90 -12.6 -3.63559 | opp_overlap 427485, overlap 427483 TGAAAAAGTGGAAAA CCCCTTGC GACAG GCAAGGGG TGTTTAGTTATTCGT TERM 695 427505 - 427485 - R 100 -12.6 -4.31329 | opp_overlap 427483 427485 TGAAAAAGTGGAAAA CCCCTTGC GACAG GCAAGGGG TGTTTAGTTATTCGT Aflv_0387 427674 - 427513 - | Uncharacterized conserved protein Cys rich protein TERM 696 427769 - 427749 - H 71 -4.1 -4.88129 | opp_overlap 427749 AAAAATGAGCAAAAA TAATGAGAA TTT TTATCATTA TATGTTGACATAGAT Aflv_0388 427845 - 428144 + | Predicted diverged REC-like domain protein Aflv_0389 428152 - 428604 + | Predicted diverged REC-like domain protein TERM 697 428625 - 428584 - T 72 -8.3 -3.48766 | gap 1, opp_overlap 428560 428586 428597, overlap 428586 428597 TTTACAAGTGAAACA TATTGTAAAAAAACCGGG TAGTTCT CCCGGTT-TTTTACAATT CATCAAACCCGTTCA TERM 698 428623 - 428586 - T 80 -10.9 -3.31177 | gap 1, opp_overlap 428586 428597, overlap 428584 428597 TACAAGTGAAACATA TTGTAAAAAAACCGGG TAGTTCT CCCGGTT-TTTTACAA TTCATCAAACCCGTT TERM 699 428586 - 428623 + T 79 -10.9 -3.14463 | gap 1, opp_overlap 428586 428584 428597, overlap 428597 TACAAGTGAAACATA TTGTAAAAAAACCGGG TAGTTCT CCCGGTT-TTTTACAA TTCATCAAACCCGTT TERM 700 428597 - 428613 + T 83 -6.5 -5.10029 | opp_overlap 428586 428584 428597, overlap 428586 CATATTGTAAAAAAA CCGGG TAGTTCT CCCGG TTTTTTACAATTCAT TERM 701 428613 - 428597 - T 91 -6.5 -5.45726 | opp_overlap 428597 428586, overlap 428586 428584 CATATTGTAAAAAAA CCGGG TAGTTCT CCCGG TTTTTTACAATTCAT nrdF 429655 - 428618 - | Ribonucleotide reductase, beta subunit TERM 702 429521 - 429509 - GT 76 -7.7 -4.0896 | opp_overlap 429508 429509, overlap 429497 AAACGGCGTCCAAAA GTTGC CGA GCAAC ATTTTGTATATATCG Aflv_0391 430100 - 429609 - | Flavodoxin Aflv_0392 431438 - 430263 - | Transposase nrdE 433810 - 431534 - | Ribonucleotide reductase, alpha subunit TERM 703 433863 - 433845 - R 100 -8.1 -6.14618 | opp_overlap 433862 TAGAAAATAAAAAAA TCCGCCC TTGTT GAGCGGA TGAAACGATGGAAAA TERM 704 433862 - 433904 + r 100 -15.1 -3.35679 | opp_overlap 433845 433869, overlap 433869 CGCCCTTGTTGAGCG GATGAAACGATGGAAAAAG GCATG CTTTCACCATCGTTTCATC TTCTCAATCCCCGAA TERM 705 433897 - 433869 - R 70 -8.2 -3.74693 | opp_overlap 433862 433869 GTTGAGCGGATGAAA CGATGGAAAAAG GCATG CTTTCACCATCG TTTCATCTTCTCAAT Aflv_0394 435259 - 434219 - | Cytochrome bd-type quinol oxidase, subunit 2 TERM 706 434455 - 434479 + g 71 -4.2 -4.89063 | gap 1, opp_overlap 434452, overlap 434458 CGATCGCAACCACCG CAAGG-CGTGG CATT CCGCGTCCATG TTTCTTTTTCCATGA Aflv_0395 436623 - 435271 - | Cytochrome bd-type quinol oxidase, subunit 1 TERM 707 436698 - 436676 - R 100 -8.5 -5.85178 | opp_overlap 436676 436679 AATATGCAAAAAAAA TAAGCGACC GTTAT GATCGCTTA TTGTAGAGCTTTTTT Aflv_0396 437745 - 436696 - | ABC-type metal ion transport system, periplasmic component/surface adhesin TERM 708 437568 - 437581 + g 82 -2.4 -5.71638 | opp_overlap 437568 ATACAGTTGTATAAA CGAT AAGTTG ATCG TTTTTTTCCTTATTC TERM 709 437741 - 437708 - G 100 -13.5 -4.41348 | gap 1, opp_overlap 437712, overlap 437712 CTCCTTCCAAATAAA GAAAGATGTT-TCTGA TCA TCAGATAACATCTTTC TCACTCCTGCTTTAT TERM 710 437737 - 437712 - G 100 -8.5 -4.78326 | gap 1, opp_overlap 437712, overlap 437708 TTCCAAATAAAGAAA GATGTT-TCTGA TCA TCAGATAACATC TTTCTCACTCCTGCT TERM 711 437712 - 437737 + g 77 -8.5 -3.93963 | gap 1, opp_overlap 437712 437708 TTCCAAATAAAGAAA GATGTT-TCTGA TCA TCAGATAACATC TTTCTCACTCCTGCT Aflv_0397 438965 - 437784 - | GTPase (G3E type), CobW/P47K subfamily TERM 712 439000 - 438988 - R 74 -6.3 -4.36914 | opp_overlap 438988 438987 CTCCTTTTGATAAAA CGTAA TCA TTACG ATTTACAACGTTTAT TERM 713 439060 - 439031 - R 100 -9.4 -5.83822 | opp_overlap 439037 CATATCGAAAAAAAA GAGAAAGGGCAA CTATTT TTGCTCTTTCTC TGGCACAGGATCAAA Aflv_0398 439267 - 439043 - | Uncharacterized conserved protein, HlyA family luxS 439355 - 439870 + | LuxS protein involved in autoinducer AI2 synthesis TERM 714 439875 - 439907 + T 100 -14.4 -5.47218 | opp_overlap 439875 439879 TATTTGGTTAAAAAA TAAAGGTTCAGACG CTACA TGTCTGAACCTTTA TTTTTTTCACTCGGC TERM 715 439907 - 439875 - T 100 -13.7 -5.0133 | opp_overlap 439875, overlap 439879 TATTTGGTTAAAAAA TAAAGGTTCAGAC GCTACAT GTCTGAACCTTTA TTTTTTTCACTCGGC TERM 716 439903 - 439879 - T 93 -10.1 -5.04249 | opp_overlap 439875, overlap 439875 TGGTTAAAAAATAAA GGTTCAGAC GCTACAT GTCTGAACC TTTATTTTTTTCACT Aflv_0400 440044 - 439889 - | hypothetical protein TERM 717 440068 - 440080 + H 79 -3.5 -5.3671 | overlap 440052 AATACAAAAGCGTAT TATTT TCC AAATA TTTTTTCGTTATGTT dps 440139 - 440576 + | DNA-binding ferritin-like protein (oxidative damage protectant) TERM 718 440574 - 440598 + GF 100 -13 -3.77087 | opp_overlap 440577, overlap 440577 AAATCGTTTCTCGGA TAAGGTGGGA GTTGG TCCCACCTTA TTTGCATGTTCAGTC TERM 719 440595 - 440577 - gf 78 -10.3 -3.28712 | opp_overlap 440574 440577 TCGTTTCTCGGATAA GGTGGGA GTTGG TCCCACC TTATTTGCATGTTCA TERM 720 440577 - 440595 + GF 89 -10.3 -4.011 | opp_overlap 440577, overlap 440574 TCGTTTCTCGGATAA GGTGGGA GTTGG TCCCACC TTATTTGCATGTTCA Aflv_0402 440545 - 441000 + | hypothetical protein Aflv_0403 441061 - 441537 + | NUDIX family hydrolase TERM 721 441519 - 441548 + T 71 -4.9 -4.64766 | opp_overlap 441540, overlap 441540 AAAACAAGAGTTACA GCGGCGGGG AATGTTGTAAAA CCCCACCGC TTTTTGACGTGTGGG Aflv_0404 442371 - 441565 - | ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Aflv_0405 443137 - 442358 - | ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component TERM 722 442523 - 442513 - G 78 -5.4 -4.93877 | overlap 442514 442517 TTGCAGTAAATAAAA CGAT CCG ATCG CTCATTGCAATCGCT TERM 723 442776 - 442797 + g 70 -5.1 -4.46757 | opp_overlap 442777, overlap 442777 CCGATTTGATGTAGA AGAGAGAGC GTTT GCTTTCTCG TTTTCTCGCTATATT Aflv_0406 444115 - 443138 - | ABC-type nitrate/sulfonate/taurine/bicarbonate transport system, periplasmic component TERM 724 444213 - 444191 - R 100 -11.2 -5.2853 | opp_overlap 444191 GACCTAAAAAGAAAA CCGCCGAGCA CAT CGCCCGACGG TTTAATTAATCGAAT Aflv_0407 444457 - 444215 - | hypothetical protein Aflv_0408 444633 - 445775 + | Fatty acid desaturase TERM 725 445777 - 445793 + T 100 -7.2 -5.93252 | opp_overlap 445777 TGAAAGAAAAGTAAA GCGTCG CATCT CGGCGC TTTTTTGTTTTTAGA TERM 726 445808 - 445835 + T 70 -5.5 -4.41548 | opp_overlap 445811, overlap 445811 445813 CTTTTTTGTTTTTAG AAAGACGTGGG CAATCA CCCACGCCTTA TTTTCTCCCCTGTAG TERM 727 445832 - 445811 - T 84 -10.1 -3.85698 | opp_overlap 445808 445811 445813 TTTTGTTTTTAGAAA GACGTGGGC AATC ACCCACGCC TTATTTTCTCCCCTG TERM 728 445811 - 445832 + T 78 -7.2 -4.32067 | opp_overlap 445811, overlap 445808 445813 TTTTGTTTTTAGAAA GACGTGGG CAATCA CCCACGCC TTATTTTCTCCCCTG Aflv_0409 446630 - 445833 - | ABC-type cobalt transport system, ATPase component TERM 729 446508 - 446498 - GT 79 -5.4 -4.91473 | GAACGGAAAAAGAAA CATC ATG GATG GCTTTATGACCATCT Aflv_0410 447289 - 446555 - | ABC-type cobalt transport system, permease component CbiQ Aflv_0411 448236 - 447271 - | ABC-type cobalt transport system, permease component TERM 730 447520 - 447504 - G 70 -5.1 -4.56597 | CTGCGGTGTGAAAAA TGGACCA TTC TAGCCCA TCTGGTTTGGATGAT Aflv_0412 449478 - 448288 - | N-acetylmuramoyl-L-alanine amidase fused to LysM and peptidoglycan binding domain TERM 731 448314 - 448324 + gr 76 -2.6 -5.25735 | TTTCTTTTAGTTTGC TTAT GAT ATAA TTTTTCGTTTTTTCG TERM 732 449304 - 449318 + gr 71 -7.2 -3.85817 | ATACTACTATATGTT CCATTT CGT AAATGG TTTGTACGAAACAAT TERM 733 449343 - 449370 + gr 79 -8.5 -4.08948 | opp_overlap 449348, overlap 449348 AACAATAAAAAAAGA AAAAAGCTGCC GAAACA GGCAGCTTTTG TTGTTTATGCGATTG TERM 734 449365 - 449348 - GR 100 -8.4 -6.12458 | opp_overlap 449348 449343 TAAAAAAAGAAAAAA GCTGCC GAAACA GGCAGC TTTTGTTGTTTATGC TERM 735 449348 - 449365 + gr 100 -8.4 -5.05116 | opp_overlap 449348, overlap 449343 TAAAAAAAGAAAAAA GCTGCC GAAACA GGCAGC TTTTGTTGTTTATGC pckA 451045 - 449375 - | Phosphoenolpyruvate carboxykinase (ATP) TERM 736 450196 - 450175 - GH 74 -4.4 -4.87626 | CTTCAATATTAAAAA CACCGTTG TTTGAC CAACCGTG CTCGTCATCGCCAAT TERM 737 451289 - 451270 - H 86 -7.9 -4.85433 | opp_overlap 451270 AGACAAATGCAAAAA CCTTTCC TCTGAG GGAAAGG TTTTTTTCACGATAG TERM 738 451270 - 451289 + H 95 -8.6 -5.42259 | opp_overlap 451270 AGACAAATGCAAAAA CCTTTCCT CTGA GGGAAAGG TTTTTTTCACGATAG metK 451365 - 452570 + | S-adenosylmethionine synthetase TERM 739 452604 - 452578 - T 91 -9.5 -4.51994 | opp_overlap 452578 CGAAGTAAGAAGAAA GAGAGAGTTAC GTCAT GTAGCTCTCTC TTTTTACATCAAGGC TERM 740 452578 - 452604 + T 100 -12.4 -4.65895 | opp_overlap 452578 CGAAGTAAGAAGAAA GAGAGAGTTACG TCA TGTAGCTCTCTC TTTTTACATCAAGGC TERM 741 452637 - 452626 - T 70 -5.8 -4.48221 | overlap 452628 CATCAAGGCAGAAAA GGTG GTAA CACC AAACAACGTACCGAG Aflv_0415 453132 - 452608 - | Membrane-associated phospholipid phosphatase TERM 742 453226 - 453181 - R 71 -4.2 -4.91987 | gap 1, opp_overlap 453194 453220, overlap 453185 453194 AAGTCAATAATAAAA CAATGTAAAAATACCACGC TTATTTGTC GCGTGGTTTGTTTAC-TTG AAGTGATTTATAATA TERM 743 453194 - 453214 + r 73 -5.4 -4.56702 | opp_overlap 453194 453185 453181 AACAATGTAAAAATA CCACGC TTATTTGTC GCGTGG TTTGTTTACTTGAAG Aflv_0416 453730 - 453200 - | Isoleucine patch superfamily protein Aflv_0417 453807 - 454631 + | Lysophospholipase, alpha-beta hydrolase superfamily TERM 744 454911 - 454925 + GF 75 -10 -3.10164 | TGATCCGACTGACTT TCGTGC GTT GCACGA TTCAATGATCCATGC TERM 745 455156 - 455140 - gf 72 -4.3 -4.8236 | overlap 455142 CATGTAAAAAAAGAA GAGCGCA TTC CGCGCTT GAAGCAATGGTTCGC TERM 746 455154 - 455142 - gf 71 -6.9 -4.0057 | overlap 455140 TGTAAAAAAAGAAGA GCGCA TTC CGCGC TTGAAGCAATGGTTC Aflv_0418 454597 - 455676 + | hypothetical protein Aflv_0419 455633 - 456283 + | Endonuclease, Uma2 family (restriction endonuclease fold) TERM 747 456323 - 456289 - T 88 -8.7 -4.71828 | opp_overlap 456294, overlap 456294 ATTCCACTAACAAAA CAAAAGTAGCGATGG AGATG CAATCGCTACTTTTT TATCTCTTCTCAATC TERM 748 456318 - 456294 - T 93 -8.6 -5.28831 | opp_overlap 456294, overlap 456289 ACTAACAAAACAAAA GTAGCGATGG AGATG CAATCGCTAC TTTTTTATCTCTTCT TERM 749 456294 - 456318 + T 95 -8.6 -5.48787 | opp_overlap 456294 456289 ACTAACAAAACAAAA GTAGCGATGG AGATG CAATCGCTAC TTTTTTATCTCTTCT Aflv_0420 456898 - 456323 - | SAM-dependent methyltransferase TERM 750 456834 - 456790 - G 78 -7.2 -4.41348 | gap 1, opp_overlap 456779, overlap 456774 GTTCCGCTAAATAAA GCG-TATCGTGGCCGTTGC CTATCGTT GCATCGACGACGATATCGC CCTCTTTGACTGCTA Aflv_0421 457854 - 456895 - | Radical SAM superfamily enzyme Aflv_0422 457964 - 458233 + | hypothetical protein Aflv_0423 458244 - 458384 + | hypothetical protein TERM 751 458386 - 458416 + T 100 -15.5 -3.11579 | opp_overlap 458376 458385, overlap 458384 458382 ATAATGAAACGTAAT TTCCCCACTCGGA CATGC TCCGGGTGGGGGA TCGTTTAGTTTTGCT Aflv_0424 459203 - 458421 - | hypothetical protein TERM 752 458874 - 458886 + g 71 -4.1 -4.8743 | GAGAGTTATTTTAGA TAGTG TCG CGCTA TTTGTTTCTTTTAAA TERM 753 459758 - 459734 - H 77 -8.5 -3.84246 | GCGTTAATGATGAAA GTGAGTGCACG ATT CGTGCGCTAAC AAGGGTGGTACCGCG TERM 754 459781 - 459807 + H 100 -12.3 -5.95286 | opp_overlap 459780 459781, overlap 459772 GTACCGCGGGAGAAT CCTCTCGTCCC TTTTT GGGATGGGAGG TTTTTTGTTTTTCAT TERM 755 459929 - 459919 - g 84 -5.4 -5.27476 | overlap 459914 GGGAAGAAAATAAAA CGTT TAA AACG ACAGAAGACGACGGG TERM 756 461864 - 461850 - g 80 -5 -5.18561 | CAAACAGTGAAAAAA GTAACC GAA GATTAC GAAGCGCTTCGTTTC leuS 459858 - 462275 + | Leucyl-tRNA synthetase TERM 757 462284 - 462308 + G 82 -8.5 -4.25104 | opp_overlap 462284 AAATTAATGTACAAA GCCTCTCGC ACATGTG GCGGGGGGC TTTTGCTAAAGAAAG Aflv_0426 462262 - 462630 + | Rhodanese-related sulfurtransferase TERM 758 462677 - 462637 - T 83 -9.9 -3.89695 | opp_overlap 462641 462648, overlap 462632 462641 CTTTTATAAATAGAA GGAACCAATAAGATCGC TTGATCG GCGATCTTATTGGTTTG CATACATAGCAGCAT TERM 759 462673 - 462641 - T 100 -15.1 -3.60035 | opp_overlap 462641 462648, overlap 462637 462632 TATAAATAGAAGGAA CCAATAAGATCGC TTGATCG GCGATCTTATTGG TTTGCATACATAGCA TERM 760 462641 - 462673 + T 100 -15.8 -3.6682 | opp_overlap 462641 462637 462632, overlap 462648 TATAAATAGAAGGAA CCAATAAGATCGCT TGATC GGCGATCTTATTGG TTTGCATACATAGCA Aflv_0427 463941 - 462667 - | Predicted flavoprotein TERM 761 464734 - 464720 - g 82 -8.6 -4.29049 | GAACTATTAAAACAA GATCGT GGC ACGATC CATATGTCATTAAAA Aflv_0428 464033 - 465658 + | Polysaccharide biosynthesis protein TERM 762 465668 - 465638 - T 88 -4 -5.7946 | opp_overlap 465640 465641 465643 465646, overlap 465643 TTTTTAAGAAAAAAA GAAAAGAAGGCTGT GTC ATAGCCTTCTCCTT TGTATTAGAAGTCGC TERM 763 465643 - 465663 + T 75 -10.5 -3.11182 | opp_overlap 465638 465643, overlap 465641 465640 465646 AAGAAAAAAAGAAAA GAAGGCTGT GTC ATAGCCTTC TCCTTTGTATTAGAA TERM 764 465663 - 465643 - T 100 -8.3 -5.64328 | opp_overlap 465643 465641 465640 465646, overlap 465638 AAGAAAAAAAGAAAA GAAGGCTGT GTC ATAGCCTTC TCCTTTGTATTAGAA Aflv_0429 465993 - 465673 - | hypothetical protein TERM 765 465886 - 465874 - G 73 -9.1 -3.5394 | overlap 465878 AAATCCCGGTGTAAA CGGAG AGC CTCCG TAATACGGCATGCCC Aflv_0430 466043 - 466765 + | RNA pseudouridine synthase TERM 766 466789 - 466763 - T 76 -2.2 -5.5208 | opp_overlap 466764 466769, overlap 466765 GGAGAAGACAAAAAA TAGGAACCTG TATCGCT CAGGTTCCGT CTATATCCATGTCGT TERM 767 466787 - 466765 - T 86 -9.2 -4.38219 | opp_overlap 466764 466769, overlap 466763 AGAAGACAAAAAATA GGAACCTG TATCGCT CAGGTTCC GTCTATATCCATGTC Aflv_0431 467025 - 466804 - | Transcription regulator DeoR family Aflv_0432 467187 - 468599 + | Zinc-dependent metallopeptidase TERM 768 468620 - 468659 + F 95 -11.6 -4.7219 | opp_overlap 468623 468624 468629, overlap 468623 468624 TCCAAAAATATGTTA TAATGAAAAGTGCCGTCG CTCA TGACGGTACTTTTCGTCA TTTTATATTGATATG TERM 769 468623 - 468656 + F 91 -13.3 -3.26743 | opp_overlap 468623 468624 468629, overlap 468620 468624 AAAAATATGTTATAA TGAAAAGTGCCGTCG CTCA TGACGGTACTTTTCG TCATTTTATATTGAT TERM 770 468655 - 468624 - f 81 -11.7 -2.62851 | opp_overlap 468623 468620 468624, overlap 468623 468629 AAAATATGTTATAAT GAAAAGTGCCGTC GCTCAT GACGGTACTTTTC GTCATTTTATATTGA TERM 771 468624 - 468655 + F 95 -14.6 -2.54961 | opp_overlap 468624 468623 468629, overlap 468623 468620 AAAATATGTTATAAT GAAAAGTGCCGTCG CTCA TGACGGTACTTTTC GTCATTTTATATTGA TERM 772 468650 - 468629 - f 73 -5.8 -4.49389 | opp_overlap 468624 468623 468620, overlap 468624 468623 ATGTTATAATGAAAA GTGCCGTC GCTCAT GACGGTAC TTTTCGTCATTTTAT Aflv_0433 468686 - 469837 + | Maltose permease, MFS type TERM 773 470271 - 470248 - g 84 -6.1 -5.02476 | gap 1, opp_overlap 470249 470250 470253, overlap 470250 ACATTGGCGAAAAAA TG-GAACGGA TCGTT TCCGTTCTCA CTTGAAACATATCCG Aflv_0434 469834 - 470400 + | 2'-5' RNA ligase lrgA 470423 - 470800 + | Putative effector of murein hydrolase LrgA, holin family lrgB 470797 - 471468 + | Putative effector of murein hydrolase LrgB TERM 774 471933 - 471943 + G 70 -2.6 -5.01732 | TATTATTATGACGTA TATT TAA AATA TTTTTTGCAACGCTT TERM 775 471981 - 471992 + G 71 -3 -5.06414 | ACATACTTATGTATG TACA AGCC TGTA TTTTTATTGAAAAAA TERM 776 472020 - 472008 - g 80 -4.8 -5.08824 | opp_overlap 472008 TTTTTATTGAAAAAA GCTC CTGTC GAGC TTAATACGATTTTGA Aflv_0437 471504 - 472460 + | hypothetical protein TERM 777 472446 - 472471 + F 79 -5.5 -4.95854 | gap 1, opp_overlap 472448 ATTGAAGAAGTGGAA GAGGCTGACG AATGAAG CGT-AGCCTC TTTTTCAATTTTTTA Aflv_0438 472671 - 474791 + | Type II secretory pathway, pullulanase TERM 778 475282 - 475260 - g 76 -7.7 -4.18494 | gap 1 TATGCTGAGTTAAAA GCGCACCCGA TCGT TCGGG-ACGC ATTGACATTTTTAGA TERM 779 475629 - 475604 - g 100 -14.9 -4.63107 | opp_overlap 475609 ACGAAACAACGAAAA GGAAATGCAAC GATT GTTGCATTTCC TTGAACATGTGCTAC TERM 780 475609 - 475624 + G 74 -7.6 -3.91352 | opp_overlap 475604 ACAACGAAAAGGAAA TGCAAC GATT GTTGCA TTTCCTTGAACATGT Aflv_0439 474873 - 475649 + | Phosphotransferase, choline kinase family enzyme Aflv_0440 475916 - 475641 - | hypothetical protein TERM 781 476581 - 476571 - gH 75 -2.6 -5.19251 | GAATATGAACAAAAA TTTT CAG AAAA AGGAAATCCGATTTA Aflv_0441 475890 - 476633 + | Predicted SAM-dependent methyltransferase TERM 782 476622 - 476644 + FH 100 -5.6 -6.14618 | opp_overlap 476622 GTGAAGTATCGAAAA CCTATGTC ATAATCA GGCATAGG TTTTTTTCTTTTCTG Aflv_0442 476680 - 477552 + | Zn-dependent hydrolase, glyoxylase family TERM 783 477573 - 477554 - T 85 -9.3 -4.23104 | opp_overlap 477554 TTAAACGTCAATAAA CCCAAGC GGCTTT GCTTGGG TTTTACAATTTTCTT TERM 784 477554 - 477573 + T 89 -10 -4.30559 | opp_overlap 477554 TTAAACGTCAATAAA CCCAAGCG GCTT TGCTTGGG TTTTACAATTTTCTT Aflv_0443 477878 - 477576 - | Uncharacterized small secreted protein Aflv_0444 477979 - 479046 + | Cellulase M related protein Aflv_0445 479059 - 479586 + | Inosine/xanthosine triphosphatase TERM 785 479736 - 479757 + G 70 -7.3 -3.75884 | overlap 479732 GATTATACGTTTTAT GCGGTCGAT CGCG ATCGATTGC TTGATTTATTTGCGG Aflv_0446 479571 - 479909 + | Thioredoxin Aflv_0447 479893 - 480705 + | hypothetical protein Aflv_0448 480702 - 481310 + | EMAP domain RNA-binding protein TERM 786 481306 - 481330 + F 100 -14.3 -5.67063 | GTCAACCATTTTTCA GCTGACTTCCG TCA CGGCAGTCAGC TTTTTTTGTGGTAAA Aflv_0449 481488 - 483548 + | DNA segregation ATPase FtsK/SpoIIIE TERM 787 484207 - 484184 - g 76 -8.1 -4.17048 | opp_overlap 484183 484188, overlap 484188 TGGTGGGGAAAACAA GGCATGGGG ACGATG CCGCATGCC CTCATTCAATTGTTT Aflv_0450 483590 - 484729 + | Nicotinic acid phosphoribosyltransferase TERM 788 484765 - 484740 - f 100 -13.5 -4.75308 | opp_overlap 484740 AGTAACACGGAAAAA CTGATAGAAGA ACGT TCTTCTATCAG TTTTTCTTATCATCG TERM 789 484740 - 484765 + F 100 -13.5 -5.22006 | opp_overlap 484740 AGTAACACGGAAAAA CTGATAGAAGA ACGT TCTTCTATCAG TTTTTCTTATCATCG TERM 790 485530 - 485544 + G 74 -4.2 -5.055 | opp_overlap 485530 TACAAAAAATACAAG CGAAAG TTC CTGTCG TTTTTTACGGGTTCG murC 484890 - 486191 + | UDP-N-acetyl muramate-alanine ligase TERM 791 486189 - 486228 + T 81 -11.9 -2.85606 | gap 1, opp_overlap 486196, overlap 486196 CAGTCGGTTCATGTA TAAA-AAAGCAACTATGA TTCGC TCATAGTTGCTTTCTTTA TCTGCTCATATGTAA TERM 792 486196 - 486220 + T 93 -11.6 -4.64048 | opp_overlap 486196, overlap 486189 TTCATGTATAAAAAA GCAACTATGA TTCGC TCATAGTTGC TTTCTTTATCTGCTC TERM 793 486220 - 486196 - T 100 -11.6 -5.28176 | opp_overlap 486196 486189 TTCATGTATAAAAAA GCAACTATGA TTCGC TCATAGTTGC TTTCTTTATCTGCTC Aflv_0452 486535 - 486200 - | Thioredoxin Aflv_0453 486845 - 486516 - | Uncharacterized conserved protein, involved in general stress response TERM 794 486628 - 486662 + g 78 -4.2 -5.1356 | opp_overlap 486628 GAAGGAAGCGGAATA GGGATCGAGGAGAA CGGCTTT TGCTCCTCTTTCCC TTTTTGTTGCTCCAC Aflv_0454 487250 - 486858 - | Uncharacterized conserved membrane or secreted protein, involved in general stress response (DUF948) TERM 795 487155 - 487165 + g 73 -5.4 -4.70879 | overlap 487145 487164 AACGTGTTGTAACGT CGTT TGC AACG TTTTTAACGTTTGGA ampS 487350 - 488495 + | Aminopeptidase TERM 796 488536 - 488493 - T 100 -15.1 -4.4595 | gap 1, opp_overlap 488503, overlap 488503 CCAGAAAACTTAAAA TAAAGAAAAAGCAACTATGA CTCGC TCATAGTTGCTTTTTCTT-A TGCCAAACAATTTCA TERM 797 488503 - 488527 + T 100 -11.6 -5.18726 | opp_overlap 488493 488503 TAAAATAAAGAAAAA GCAACTATGA CTCGC TCATAGTTGC TTTTTCTTATGCCAA TERM 798 488527 - 488503 - T 100 -11.6 -5.59962 | opp_overlap 488503, overlap 488493 TAAAATAAAGAAAAA GCAACTATGA CTCGC TCATAGTTGC TTTTTCTTATGCCAA Aflv_0456 490674 - 488518 - | FtsA-like ATPase fused to uncharacterized domain aroA 490816 - 491907 + | 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase TERM 799 491934 - 491915 - f 82 -12.2 -3.00986 | opp_overlap 491915, overlap 491912 AAGCATAGCAAATTA GCTGGTGA GTGT TCACCAGC TTTTCTTATGAATTT TERM 800 491915 - 491934 + F 100 -12.2 -4.81863 | opp_overlap 491915 491912 AAGCATAGCAAATTA GCTGGTGA GTGT TCACCAGC TTTTCTTATGAATTT TERM 801 492249 - 492238 - g 82 -2.2 -5.65513 | TAGCAAGTAAAAAAA CAAC GACA GTCG GCGTCATTATTCCGG ccpA 491988 - 493058 + | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 802 493119 - 493150 + T 71 -5.2 -4.49377 | gap 1, opp_overlap 493122, overlap 493122 GTGAACAAACATAGA GAAGGGTGT-CCG CTACTTT CGGAACACCCTTG TTATTTTATTATAAG TERM 803 493122 - 493147 + T 76 -6.9 -4.33214 | gap 1, opp_overlap 493122, overlap 493119 AACAAACATAGAGAA GGGTGT-CCG CTACTTT CGGAACACCC TTGTTATTTTATTAT acuC 494358 - 493159 - | Histone deacetylase family protein, involved in acetoin utilization TERM 804 493209 - 493222 + gT 85 -2.3 -5.75478 | GCTGAAGTGCTTTCA TGACC GTTT GGGCA TTTTTTTCTGTAATT acuB 494957 - 494328 - | Acetoin utilization protein (CBS, ACT domains) Aflv_0461 495624 - 494992 - | Acetyltransferase (GNAT family), involved in acetoin utilization TERM 805 497076 - 497066 - g 78 -5.4 -4.94222 | opp_overlap 497066 AATAATCCACAAAAA TACG AAT CGTA CTTTTTACCGGGGGA acsA 495788 - 497509 + | Acyl-coenzyme A synthetase TERM 806 497502 - 497542 + T 83 -12.1 -3.23296 | opp_overlap 497504 497515, overlap 497503 497515 ACTTATCAACAATGG AAGATTAAAAAAATCGGGC ATG GCCCGATTTTTTTAATTAG TTGATGACTGTTCTT TERM 807 497503 - 497541 + T 95 -15.6 -2.53255 | opp_overlap 497504 497515, overlap 497502 497515 CTTATCAACAATGGA AGATTAAAAAAATCGGGC ATG GCCCGATTTTTTTAATTA GTTGATGACTGTTCT TERM 808 497540 - 497504 - T 100 -16.9 -3.30203 | opp_overlap 497503 497502 497515, overlap 497515 TTATCAACAATGGAA GATTAAAAAAATCGGGC ATG GCCCGATTTTTTTAATT AGTTGATGACTGTTC TERM 809 497515 - 497529 + T 100 -11.4 -5.66868 | opp_overlap 497504 497515, overlap 497503 497502 GGAAGATTAAAAAAA TCGGGC ATG GCCCGA TTTTTTTAATTAGTT TERM 810 497529 - 497515 - T 100 -11.4 -5.63374 | opp_overlap 497515 497503 497502, overlap 497504 GGAAGATTAAAAAAA TCGGGC ATG GCCCGA TTTTTTTAATTAGTT Aflv_0463 500351 - 497535 - | Membrane carboxypeptidase (penicillin-binding protein) fused to uncharacterized domain TERM 811 497804 - 497818 + g 70 -7.1 -3.76474 | overlap 497802 CTTGTTCATGATGTT CGCTC CAAAC GAGCG TATTTCCTTTTTGAT TERM 812 498630 - 498648 + g 72 -7.4 -3.94846 | GAACTTCCCACCATT CGCAAATG TAG CATATGCG TTTACATTTTCCTCA TERM 813 499880 - 499902 + g 72 -6.3 -4.39877 | opp_overlap 499879 GCTGTGTTAATGTAC TTCCTCCAC TACGT GTAGAGGAA TTTGTTGCTTCTTGA TERM 814 500696 - 500672 - H 90 -9.4 -4.38712 | gap 1, opp_overlap 500672 GGTACCGCGATAAAA CTCGTCCCTTC GTGT GAAGG-ACGAG TTTTTTGTTTGGATT TERM 815 500672 - 500696 + H 100 -9.4 -5.67283 | gap 1, opp_overlap 500672 GGTACCGCGATAAAA CTCGTCCCTTC GTGT GAAGG-ACGAG TTTTTTGTTTGGATT tyrS 500705 - 501994 + | Tyrosyl-tRNA synthetase TERM 816 501999 - 502022 + T 100 -15.4 -5.26875 | opp_overlap 501999 GTTATGCATAAAAAA TCCTCTCTGC TTCA GCAGAGAGGA TTTTTTCATTAACGA TERM 817 502022 - 501999 - T 100 -15.4 -5.28176 | opp_overlap 501999 GTTATGCATAAAAAA TCCTCTCTGC TTCA GCAGAGAGGA TTTTTTCATTAACGA rpsD 502690 - 502031 - | Ribosomal protein S4 TERM 818 504034 - 504023 - g 71 -4.4 -4.86862 | TCGAAAAAATTAAAA CATC GTTT GATG CGGAAGAAGTCGGTT Aflv_0466 503005 - 504861 + | Signal transduction diguanylate cyclase (GAF-GAF-GGDEF domains) TERM 819 504864 - 504883 + T 80 -7.8 -4.46254 | opp_overlap 504864 GCAAGAATATTAAAA GAGGCCAA TTCA TCGGCCTC TTTCTTATATGTTGA TERM 820 504883 - 504864 - T 91 -10 -4.49937 | opp_overlap 504864 GCAAGAATATTAAAA GAGGCCAA TTCA TCGGCCTC TTTCTTATATGTTGA Aflv_0467 505382 - 504888 - | Methionine-(R)-sulfoxide reductase hisJ 506208 - 505387 - | Histidinol phosphate phosphatase TERM 821 506264 - 506254 - H 71 -4 -5.00616 | opp_overlap 506254 TTTTTGCTCAAAAAA TGTT GCT AACA TGGTATCATAAAATC TERM 822 506813 - 506796 - g 70 -2.6 -5.0538 | overlap 506811 CGTCACGTGAAAAAA GCGATG CTTACC CAACGC CATACGTTTGGGCGT ezrA 506319 - 508031 + | Negative regulator of FtsZ ring formation (frequency and position) TERM 823 508014 - 508063 + T 90 -8.7 -4.90778 | opp_overlap 508020 508025, overlap 508025 CGCATCCGCCAGTGG TTAAAAGAAAACGAGTGAAAGGG GTGA CCCTTTCACTCGTTTTAGCTTGC TTTTCTTTCGGTACG TERM 824 508057 - 508020 - T 100 -18.7 -4.09685 | opp_overlap 508014 508025, overlap 508025 CGCCAGTGGTTAAAA GAAAACGAGTGAAAGGG GTGA CCCTTTCACTCGTTTTA GCTTGCTTTTCTTTC TERM 825 508025 - 508052 + T 100 -18.6 -4.34711 | opp_overlap 508020 508025, overlap 508014 GTGGTTAAAAGAAAA CGAGTGAAAGGG GTGA CCCTTTCACTCG TTTTAGCTTGCTTTT TERM 826 508052 - 508025 - T 100 -18.6 -5.07652 | opp_overlap 508025 508014, overlap 508020 GTGGTTAAAAGAAAA CGAGTGAAAGGG GTGA CCCTTTCACTCG TTTTAGCTTGCTTTT braB 509467 - 508055 - | Branched-chain amino acid permease TERM 827 510098 - 510113 + G 71 -8.2 -3.51708 | overlap 510094 GATGGAGTGCAAGGT GCGGCG AAGG TGCCGC TTCATTTAAAACGTG nifZ 509561 - 510712 + | Cysteine desulfurase Aflv_0472 510709 - 511902 + | Thiamine biosynthesis ATP pyrophosphatase sspD 511958 - 512149 + | Small acid-soluble spore protein (alpha/beta-type SASP) TERM 828 512187 - 512166 - g 100 -10.2 -4.4009 | opp_overlap 512166 TGTTAGGTGACAAAA CTCGGTAG TTCATC CTACCGAG TTTTTATTTTTAAAA TERM 829 512166 - 512187 + G 100 -10.2 -5.61881 | opp_overlap 512166 TGTTAGGTGACAAAA CTCGGTAG TTCATC CTACCGAG TTTTTATTTTTAAAA TERM 830 512215 - 512245 + G 78 -4.2 -5.23316 | opp_overlap 512215 AAATTTTTAGAAAAG TTATACAAAATTAT TCG ATTTTTTTGTATAA TTTTTTCGTATCATA Aflv_0474 512157 - 513854 + | Acetyl-coenzyme A synthetase TERM 831 513866 - 513917 + T 84 -8.2 -4.77757 | gap 1, opp_overlap 513878 513885, overlap 513870 513874 513885 GTAATATATTCCGCT CTCACATATATAGTAAAAAGAGGCG TAA CGCCTCTTTTTACAAAA-ATGTTCG TTTTACTTTTTCCCA TERM 832 513870 - 513913 + T 91 -12 -3.82764 | gap 1, opp_overlap 513878 513885, overlap 513866 513874 513885 TATATTCCGCTCTCA CATATATAGTAAAAAGAGGCG TAA CGCCTCTTTTTACAAAA-ATG TTCGTTTTACTTTTT TERM 833 513874 - 513910 + T 91 -13.9 -2.66007 | opp_overlap 513878 513885, overlap 513870 513866 513885 TTCCGCTCTCACATA TATAGTAAAAAGAGGCG TAA CGCCTCTTTTTACAAAA ATGTTCGTTTTACTT TERM 834 513906 - 513878 - T 100 -19.1 -3.05022 | opp_overlap 513874 513870 513866 513885, overlap 513885 GCTCTCACATATATA GTAAAAAGAGGCG TAA CGCCTCTTTTTAC AAAAATGTTCGTTTT TERM 835 513899 - 513885 - T 95 -11.4 -4.86133 | opp_overlap 513874 513870 513866 513885, overlap 513878 CATATATAGTAAAAA GAGGCG TAA CGCCTC TTTTTACAAAAATGT TERM 836 513885 - 513899 + T 93 -11.4 -4.57837 | opp_overlap 513885 513878, overlap 513874 513870 513866 CATATATAGTAAAAA GAGGCG TAA CGCCTC TTTTTACAAAAATGT Aflv_0475 514685 - 513903 - | NAD kinase Aflv_0476 514832 - 515482 + | hypothetical protein TERM 837 515859 - 515849 - g 87 -4.6 -5.49579 | TGAGAAAAAAGAAAA GCCG CAG CAGC AACATGAAGCACCAG Aflv_0477 515457 - 515888 + | hypothetical protein tpx 515966 - 516472 + | Thiol peroxidase TERM 838 516481 - 516503 + F 93 -9.9 -5.08367 | opp_overlap 516476, overlap 516489 ACAATAATGATTTGA GGCTATCTC AAAAA GGGATAGCC TTTTTCGTTTATATT TERM 839 516983 - 516972 - g 86 -3 -5.72622 | CTGACAAATAAAAAA GTAA AAAG TTAC GGAGCGGATGCAGAC Aflv_0479 516558 - 517532 + | Adenine-specific DNA methylase ackA 517690 - 518883 + | Acetate kinase TERM 840 518888 - 518905 + T 90 -9.1 -5.02074 | opp_overlap 518888 ACTTAGCATAAAAAA GGTGTCC GTAT GGGCACC TTTTTTAAAAGATAA TERM 841 518905 - 518888 - T 89 -6.9 -5.31877 | opp_overlap 518888 ACTTAGCATAAAAAA GGTGTCC GTAT GGGCACC TTTTTTAAAAGATAA TERM 842 519058 - 519043 - T 72 -9 -3.36878 | opp_overlap 519037 GTTACCCACGCAGAA CCAAGC GATT GCTTGG TTCGAGCTCTCCTCG TERM 843 519126 - 519140 + T 85 -11.4 -3.27525 | overlap 519121 GACATTTCGCCGTTG CCCGCA CGA TGCGGG TTGCCTTTAGGCGAA Aflv_0481 519492 - 519178 - | hypothetical protein TERM 844 520573 - 520555 - g 77 -3.9 -5.1675 | TCATTGAGCAAAAAA TTGCAGA AGTCA TCTACAA CGGCCTTTGGTTTTC TERM 845 520692 - 520703 + G 73 -5.8 -4.53636 | overlap 520694 GCGATTGTAGAAGGT CGGA AATC TCCG TTTTCGTTATATGAT argG 519639 - 520847 + | Argininosuccinate synthase TERM 846 520889 - 520917 + G 86 -9 -4.25283 | gap 1, opp_overlap 520889 AAAACAGCAGCACAA TGGGTCGATG-AC TTTG GTGCATCGATCCA TTTTGATCAACAACT TERM 847 521713 - 521698 - g 80 -2.5 -5.54907 | GCCACAAAAGAAAAA CCCAG ATATGG CTGAG CTCATTCGTGGGAAA argH 520844 - 522220 + | Argininosuccinate lyase TERM 848 522246 - 522207 - Tf 93 -9.4 -4.84353 | opp_overlap 522210 522212, overlap 522208 522210 522212 AGAAAGCAAAACAAA TGATAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTGTTT GTTCAGGTGTGCGTA TERM 849 522245 - 522208 - Tf 95 -12.9 -3.48172 | opp_overlap 522210 522212, overlap 522207 522210 522212 GAAAGCAAAACAAAT GATAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTGTT TGTTCAGGTGTGCGT TERM 850 522210 - 522243 + TF 100 -17.7 -4.19678 | opp_overlap 522208 522207 522210 522212, overlap 522212 AAGCAAAACAAATGA TAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTG TTTGTTCAGGTGTGC TERM 851 522243 - 522210 - Tf 100 -15.5 -3.28108 | opp_overlap 522210 522212, overlap 522208 522207 522212 AAGCAAAACAAATGA TAGAGGCATAAAAGC AAAC GCTTTTATGCCTCTG TTTGTTCAGGTGTGC TERM 852 522241 - 522212 - Tf 100 -18.1 -3.18088 | opp_overlap 522210 522212, overlap 522210 522208 522207 GCAAAACAAATGATA GAGGCATAAAAGC AAAC GCTTTTATGCCTC TGTTTGTTCAGGTGT TERM 853 522212 - 522241 + TF 100 -18.1 -3.69469 | opp_overlap 522212 522210 522208 522207, overlap 522210 GCAAAACAAATGATA GAGGCATAAAAGC AAAC GCTTTTATGCCTC TGTTTGTTCAGGTGT uspA 522817 - 522233 - | Nucleotide-binding protein, UspA family TERM 854 522537 - 522564 + gF 71 -9.9 -2.62184 | GTTCGATCGTATGCT TCGATGGTCGC AAATGA GCGAACATCGA TAATGTGCGAAAGGA TERM 855 522603 - 522616 + gF 78 -5.3 -5.00616 | GCATCGTTCCTTTTG GCAAT TTCA ATTGC TTTTTTAAACGCCCA Aflv_0485 522791 - 522919 + | hypothetical protein TERM 856 522905 - 522930 + FH 90 -10.5 -4.42464 | opp_overlap 522905 522909, overlap 522910 GAACAAGAGGATGAA CAAAGGAGGCG ATGA TGCCTCTTTTG TTTCTTTCGAGCATT TERM 857 522910 - 522925 + FH 89 -6.8 -5.18866 | opp_overlap 522909 522905, overlap 522905 AGAGGATGAACAAAG GAGGCG ATGA TGCCTC TTTTGTTTCTTTCGA Aflv_0486 523013 - 523774 + | Dehydrogenase TERM 858 523794 - 523772 - T 100 -12.8 -4.18494 | CATCGTTATCGAAAA TAGGCTGCCA TCG TGACAGCCTA TACGATTTGTAGTTC Aflv_0487 524853 - 523792 - | Xaa-Pro aminopeptidase Aflv_0488 524992 - 525669 + | Metal-dependent hydrolase Aflv_0489 525744 - 527054 + | Predicted transcriptional regulator containing CBS domains TERM 859 527046 - 527077 + T 100 -12.5 -4.22591 | gap 1, opp_overlap 527052 TGTCAGTTGCTTGAA CGACAATAGGCTGC GTACG GCAGCCTATT-TCG TTTCTTCCGCTTCTT TERM 860 527072 - 527052 - T 88 -11.2 -3.50853 | opp_overlap 527046 TTGCTTGAACGACAA TAGGCTGC GTACG GCAGCCTA TTTCGTTTCTTCCGC Aflv_0490 527369 - 527070 - | hypothetical protein Aflv_0491 527469 - 528416 + | Bifunctional oligoRNAse and pAp phosphatase TERM 861 528402 - 528439 + T 86 -9.3 -4.43477 | opp_overlap 528399 528407 528411, overlap 528407 GATTTAAATGAAGTA TGCAAGCAACAGTAGAG CGCT TTCTACTGTTGCTTTAA TTTTAGTTCAATAGA TERM 862 528407 - 528434 + T 100 -13.6 -4.27062 | opp_overlap 528399 528407 528411, overlap 528402 AAATGAAGTATGCAA GCAACAGTAGAG CGCT TTCTACTGTTGC TTTAATTTTAGTTCA TERM 863 528434 - 528407 - T 91 -12.9 -3.15252 | opp_overlap 528407 528402, overlap 528399 528411 AAATGAAGTATGCAA GCAACAGTAGA GCGCTT TCTACTGTTGC TTTAATTTTAGTTCA Aflv_0492 528925 - 528425 - | hypothetical protein TERM 864 528639 - 528670 + g 73 -7.4 -4.19817 | gap 1, opp_overlap 528630, overlap 528642 CGAAAAGTTGTATAC GTG-TCGATGCCATA AGA TTTGGCATTGATCAC TTTTACATCAATGGA TERM 865 528794 - 528805 + g 71 -2.2 -5.19328 | TTGTTGCATTTTGAG CAGG CGCA CTTG TTTTTCTTGTAAAAT Aflv_0493 529269 - 528922 - | hypothetical protein TERM 866 529258 - 529232 - G 73 -5.2 -4.63932 | overlap 529219 529235 TAGCTTTGAATAAAA GCAGGTAAAAAC GCT GTTTTTATCTCC ATCTCGCTCACTCCT TERM 867 529509 - 529519 + G 74 -4.6 -4.83615 | GAAAACGTCCTATAT GGCG TTA TGCC TTTTTATGAGGCGTG TERM 868 529565 - 529553 - g 71 -9.1 -3.37522 | AGCGCATGGAATTAA GCCGA TTA TCGGC ATGATGGCAACGATT TERM 869 529645 - 529628 - g 73 -2.7 -5.14563 | overlap 529631 529632 GTTGTTAGCAAAAAA TAACGAC GGGT ATCGTCA ACTTGTCCATATTGC dnaE 529362 - 532595 + | DNA polymerase III, alpha subunit Aflv_0495 532686 - 533939 + | Malic enzyme TERM 870 534235 - 534223 - gf 71 -3.4 -4.94058 | TTAATCGAAACAAAA GTTC TTATC GAAC GAATATGTTTGCAGC Aflv_0496 533908 - 534528 + | Transcriptional regulator, GntR family accD 534598 - 535470 + | Acetyl-CoA carboxylase beta subunit TERM 871 535709 - 535723 + G 70 -5.6 -4.30576 | AAACTTTTTCGAATG CCACGG TGA CCGTTG TTTTGGTGATGACGA accA 535455 - 536432 + | Acetyl-CoA carboxylase alpha subunit TERM 872 536437 - 536456 + F 89 -5.7 -5.4833 | opp_overlap 536437 CGGTTATGTAAAAAA GGTCATC CATGTC GATGGCC TTTTTTATTACATGA TERM 873 536456 - 536437 - f 72 -3.5 -5.08824 | opp_overlap 536437 CGGTTATGTAAAAAA GGTCATC CATGTC GATGGCC TTTTTTATTACATGA TERM 874 536570 - 536598 + F 76 -9.1 -3.65991 | opp_overlap 536575, overlap 536575 ACCTTCGTGTTATCT TAAAGTAAGAGGT CAT ACTTCTTATTTTA TTCTGTTAAAGAGGT TERM 875 536575 - 536593 + F 84 -6.8 -4.90381 | opp_overlap 536575, overlap 536570 CGTGTTATCTTAAAG TAAGAGGT CAT ACTTCTTA TTTTATTCTGTTAAA TERM 876 536977 - 536964 - g 72 -8.1 -3.76383 | AAAAAGTTAACAGAA CACGG TTAT CCGTG TGTCGGTGTGCCGGG pfkA 536622 - 537581 + | 6-phosphofructokinase TERM 877 537928 - 537918 - gf 71 -6.8 -4.08651 | ATTTCAATGAAAGAA GTGC TTG GCAC ACCAGAAAAATTTTC TERM 878 538522 - 538533 + GF 75 -5.8 -4.72272 | CGGAGGCAAGCGATG TGGC GAAC GCCA TTTTTGATGGAACAG Aflv_0500 537591 - 539390 + | Pyruvate kinase fused to PEP-utilizers swivelling domain TERM 879 539388 - 539419 + GT 100 -17.6 -4.08394 | opp_overlap 539391 539395, overlap 539391 539395 CATGCGAGCGTGCTA TAATAAAGAAGGGG ACAT CCCCTTCTTTATTA TTTTGGGAGGGATGT TERM 880 539416 - 539391 - gT 100 -14.9 -3.29511 | opp_overlap 539391 539388 539395, overlap 539395 GCGAGCGTGCTATAA TAAAGAAGGGG ACAT CCCCTTCTTTA TTATTTTGGGAGGGA TERM 881 539391 - 539416 + GT 100 -14.9 -4.17048 | opp_overlap 539391 539395, overlap 539388 539395 GCGAGCGTGCTATAA TAAAGAAGGGG ACAT CCCCTTCTTTA TTATTTTGGGAGGGA TERM 882 539412 - 539395 - gT 100 -11.3 -4.30719 | opp_overlap 539395 539391 539388, overlap 539391 GCGTGCTATAATAAA GAAGGGG ACAT CCCCTTC TTTATTATTTTGGGA TERM 883 539395 - 539412 + GT 100 -11.3 -4.67697 | opp_overlap 539391 539395, overlap 539391 539388 GCGTGCTATAATAAA GAAGGGG ACAT CCCCTTC TTTATTATTTTGGGA TERM 884 539648 - 539662 + GT 71 -5 -4.50859 | GCATACCAAGCGATG CTCTAT TAG ATGGAG TTTGTATTTTAGTTG Aflv_0501 539344 - 539829 + | Protein affecting phage T7 exclusion by the F plasmid TERM 885 539829 - 539855 + T 93 -8.1 -5.44721 | opp_overlap 539832, overlap 539832 TTACATTCGAAAATA AAAGCATAAGC TCGTC GCTTATGCTTC TTTTTTTCCGATAAT TERM 886 539852 - 539832 - T 93 -9.8 -5.09259 | opp_overlap 539829 539832 CATTCGAAAATAAAA GCATAAGC TCGTC GCTTATGC TTCTTTTTTTCCGAT TERM 887 539832 - 539852 + T 93 -9.8 -4.80853 | opp_overlap 539832, overlap 539829 CATTCGAAAATAAAA GCATAAGC TCGTC GCTTATGC TTCTTTTTTTCCGAT Aflv_0502 540965 - 539847 - | Predicted permease TERM 888 541481 - 541509 + G 70 -7.7 -3.59867 | opp_overlap 541481, overlap 541478 541477 GTATTGCTTATGTAA TCATGAAAATA GTAGATG TATTTTCATGA TTGATTACTTTTTTA Aflv_0503 541012 - 541509 + | hypothetical protein citZ 541771 - 542889 + | Citrate synthase TERM 889 542913 - 542936 + F 91 -9.7 -4.62783 | opp_overlap 542902 ACAACGGTTGCTCAA GGTGAGAAA CTCGCC TTTCTCACC TTTTTACACTACATG icd 542954 - 544243 + | Isocitrate dehydrogenase mdh 544267 - 545205 + | Malate dehydrogenase TERM 890 545239 - 545206 - f 86 -10.6 -3.81022 | gap 1, opp_overlap 545207 545213, overlap 545213 AAAGTGTTACAATAA TA-AAAAATTCGGGG TGACT CCCCGAATTTTTGTA TATGGTCAAACAAAG TERM 891 545207 - 545237 + F 81 -11.3 -2.94099 | opp_overlap 545206 545213, overlap 545213 AAGTGTTACAATAAT AAAAAATTCGGGG TGACT CCCCGAATTTTTG TATATGGTCAAACAA TERM 892 545213 - 545231 + F 93 -10.3 -5.05601 | opp_overlap 545206 545213, overlap 545207 TACAATAATAAAAAA TTCGGGG TGACT CCCCGAA TTTTTGTATATGGTC TERM 893 545231 - 545213 - f 100 -10.3 -5.68489 | opp_overlap 545213 545207, overlap 545206 TACAATAATAAAAAA TTCGGGG TGACT CCCCGAA TTTTTGTATATGGTC Aflv_0507 545260 - 545730 + | Acyl dehydratase TERM 894 545734 - 545747 + F 100 -5.9 -6.12458 | opp_overlap 545734 GATAACTTTTAAAAA GGGGC TTTT GCCTC TTTTTTGTTTTTTTC phoP 545752 - 546537 + | DNA-binding response regulator, OmpR family (REC-wHTH domains) TERM 895 547104 - 547090 - g 70 -5.6 -4.25437 | AAATCAATATACAAA GCCGAT TGA AGCGGC AACAAAAGTAGCGAT phoR 546530 - 548293 + | Signal transduction histidine kinase TERM 896 548396 - 548420 + F 100 -5.7 -6.04324 | opp_overlap 548407 GATTGTCTTGGAATA GGCGAGGAC AACGAAC GTTCTCGTC TTTTTTCTTTTTTGG TERM 897 548740 - 548753 + G 76 -6.7 -4.57073 | opp_overlap 548739, overlap 548744 548745 548747 CGCCACCGGAATTAT CGGAA CAGT TTCCG TTTTTACGCGAACTG polA 548487 - 551114 + | DNA polymerase I TERM 898 551879 - 551869 - g 75 -8.2 -3.90744 | TGGGCGTGTAAATAA GCCG TGC CGGC GATGCGGGGAGCCCA mutM 551132 - 551953 + | Formamidopyrimidine-DNA glycosylase Aflv_0512 552020 - 552643 + | hypothetical protein TERM 899 553079 - 553098 + G 82 -7.8 -4.54727 | AAATTCAACTTCGGC GCCTTTGC GAAC GCAATGGC TTTTCGTTTGAAGAA Aflv_0513 552646 - 553257 + | Dephospho-CoA kinase TERM 900 553239 - 553264 + F 100 -6.9 -6.32976 | ACGCTTAGTTGAGTG GGGTATCCT TGAAAAAT AGGATGCCC TTTTTTTATTTTTTT gapB 553365 - 554393 + | Glyceraldehyde-3-phosphate dehydrogenase TERM 901 554391 - 554413 + F 100 -16.4 -4.86033 | opp_overlap 554394 ACGGTTGCGATGTCA TAACGCTGGG GTT CCCAGCGTTA TTTTTCTACCCATTT TERM 902 554410 - 554394 - f 95 -13.7 -3.32844 | opp_overlap 554391 GTTGCGATGTCATAA CGCTGGG GTT CCCAGCG TTATTTTTCTACCCA speD 554634 - 555008 + | S-adenosylmethionine decarboxylase TERM 903 555022 - 555042 + F 100 -7.6 -5.71983 | opp_overlap 555022, overlap 555014 AATAAACTGTAAAAA GAGGTGTA GATTA TGCACCTC TTTTTTTATCATTCA TERM 904 555042 - 555022 - f 75 -5.4 -4.7339 | opp_overlap 555014 555022 AATAAACTGTAAAAA GAGGTGTA GATTA TGCACCTC TTTTTTTATCATTCA TERM 905 555168 - 555150 - g 70 -3.8 -4.90869 | ATGAGCAACTAAAAA GCCGTTAT TAC AAAACGAC GCAATCTGCTGCATT Aflv_0516 555080 - 555472 + | hypothetical protein Aflv_0517 555535 - 556005 + | Predicted transcriptional regulator (Zn-ribbon and ATP-cone domains) TERM 906 556018 - 555991 - f 74 -6.4 -4.42047 | gap 1, opp_overlap 555998, overlap 555988 ATTAAAAAAGAACAA GGAGAAAGGGCAT AAT ATGCTCTTT-TCC ATATGAAGAAGGTCG TERM 907 555998 - 556012 + F 71 -6.4 -4.2349 | opp_overlap 555991 555988 AAGAACAAGGAGAAA GGGCAT AAT ATGCTC TTTTCCATATGAAGA TERM 908 556089 - 556099 + G 79 -8.2 -4.08216 | CCGATATATTGTCCA CGCC AAT GGCG TTTTAAGCGAACTAG TERM 909 556467 - 556453 - g 70 -5.8 -4.35327 | opp_overlap 556452 GTAGGAAAAACGAAA TTTCAA AAG TTGAAA AAGTTTTTTTCTGAT dnaB 556021 - 557436 + | Replication initiation/membrane attachment protein dnaI 557444 - 558379 + | Primosome component, helicase loader TERM 910 558940 - 558960 + G 75 -10.5 -2.80344 | overlap 558939 CAAGAATATCAAGCG TTCGTGCAA TTG TTGCGCGAA ATTGTTGCATCACGA Aflv_0520 558442 - 559296 + | hypothetical protein TERM 911 559535 - 559558 + F 100 -7.4 -6.09196 | opp_overlap 559535 GAACCACGAAACCAA CTCGTCCC TCGTTTTT GGGACGGG TTTTTTTATTTTCAA TERM 912 560186 - 560174 - g 70 -3.5 -4.8048 | CGTCCACAGGAAAAA TTAAA GAA TTTAA ACTGTTAAGTGTGGC TERM 913 561480 - 561462 - g 73 -5.2 -4.65078 | ATATGGTGAACAAAA GAGCGAAA CGA TGCCGCTC GATGCGTTCGTTGAC thrS 559591 - 561522 + | Threonyl-tRNA synthetase TERM 914 561650 - 561632 - f 73 -6.8 -4.25388 | overlap 561634 561645 561648 TAGAGTAAAAGTAAA TACTTGTT TGA AACAAGCA GAAGCACCCGCTTCT TERM 915 561728 - 561752 + F 100 -10.7 -5.60689 | ATGTTGTGAGTGAGA CGTGTGGGTGT GTT GTGCCCACACG TTTTTTGTTGTGTGC infC 561789 - 562331 + | Translation initiation factor 3 (IF-3) TERM 916 562485 - 562473 - g 79 -3.3 -5.40873 | AACACAAAAACAAAA GCGTA AAC TTCGC AAAGCAACACTTGTA rpmI 562351 - 562551 + | Ribosomal protein L35 rplT 562570 - 562929 + | Ribosomal protein L20 Aflv_0525 564224 - 562992 - | Transposase TERM 917 563748 - 563715 - G 71 -8.9 -3.39955 | AAAGGCAAAAGGGAA CGCTTGGGTCATCGT ATGA ACCATGAGCCAAACG AGAGAATGCCCCCAG TERM 918 563829 - 563839 + g 78 -5.4 -5.03145 | GTGTGTTGCCCGTGA CGAA GGC TTCG TTTTTTGGCAAATTG TERM 919 564309 - 564336 + H 93 -8.5 -5.24129 | opp_overlap 564309 AAGTAATAAAGGAAA TGACCATTCTC CCTTGA GGGGATGGTCA TTTTTTGTAAGAGGG dutB 564322 - 564849 + | dUTPase (dimeric) Aflv_0527 564896 - 565990 + | Cellulase M related protein TERM 920 565997 - 566015 + F 100 -10.3 -5.626 | opp_overlap 565996 TTTGATTAACAGGAG CCGACTC GAACA GAGTCGG TTTTTTTATCAAATA araR 566107 - 567204 + | Transcriptional regulator araR (HTH fused to periplasmic-binding domain) araD 567292 - 567987 + | L-ribulose-5-phosphate 4-epimerase araB 568003 - 569697 + | Ribulose kinase TERM 921 570855 - 570882 + G 72 -9.8 -2.76263 | overlap 570853 570876 CAGCCCGCCTCGTGT TTGACGGCGGCG AGGG CGCGGCGGTCAA TGCTTCGCTGATCGA araA 569714 - 571216 + | L-arabinose isomerase TERM 922 571969 - 571959 - g 70 -5.4 -4.4261 | CTGTCAACATTAAAA TGGA AGT TCCA GAAAAAGTTATTGTT Aflv_0532 571298 - 573121 + | Glycosyl hydrolase TERM 923 573424 - 573414 - g 91 -6.8 -5.45802 | GGTCCAAAAGAAAAA CGTC CAC GACG GCTTGACTTGGCATG abfA 573144 - 574652 + | Alpha-L-arabinofuranosidase TERM 924 574751 - 574782 + F 100 -13.2 -6.09196 | opp_overlap 574751 CCAAGAGTCAAAAAA CTAACTCGAAGCAC ACAT GTGTTTTGAGTTAG TTTTTTTCTTTTCAG TERM 925 574782 - 574751 - f 90 -8.8 -5.1615 | opp_overlap 574751 CCAAGAGTCAAAAAA CTAACTCGAAGCAC ACAT GTGTTTTGAGTTAG TTTTTTTCTTTTCAG TERM 926 574786 - 574801 + F 79 -4.8 -5.13741 | GTTTTGAGTTAGTTT TTTTCT TTTC AGAAAA TTTTTATTGACTTAA TERM 927 577040 - 577030 - f 72 -3.2 -5.17744 | ACAGATCAAGAAAAA CGGT TTC ACCA TTTGACCCTCAAACC msmR 577058 - 578125 + | Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) TERM 928 578119 - 578150 + F 100 -13.2 -4.55023 | opp_overlap 578119 578123, overlap 578123 TGCTTATACGGTAAA GAAATAGCTTTCGC TTTG GTGAGAGCTATTTC TTTTATGATGTTACG TERM 929 578150 - 578119 - f 73 -8.8 -3.63627 | opp_overlap 578119 578123, overlap 578123 TGCTTATACGGTAAA GAAATAGCTTTCGC TTTG GTGAGAGCTATTTC TTTTATGATGTTACG TERM 930 578123 - 578146 + F 84 -8.2 -4.81357 | opp_overlap 578119 578123, overlap 578119 TATACGGTAAAGAAA TAGCTTTCGC TTTG GTGAGAGCTA TTTCTTTTATGATGT TERM 931 578470 - 578456 - g 70 -3.6 -4.81851 | ATTTAAATGGAAAAA CATATA AAC TACATG CAAACGAAAACAAAA TERM 932 578498 - 578487 - g 78 -2.2 -5.56372 | AAACGAAAACAAAAA CCAT CTGC ACGG TGGAAAGAAAGGCTT TERM 933 578796 - 578777 - g 95 -8 -4.92777 | AACACGAATTAAAAA TAAAAAGC GATC GCTTTTTA CCGTTAGATCATGAA TERM 934 579212 - 579187 - g 70 -5.6 -4.32034 | gap 1, opp_overlap 579186 579182 579187 579203 TTACGAGCAGGAAAA GTGTA-TTCGT CGACC ACGAAATACAC ATTTCGTTTGGCACA galM 578134 - 579234 + | Aldose 1-epimerase (mutarotase) TERM 935 579240 - 579283 + T 100 -13.5 -3.87505 | gap 1, opp_overlap 579251, overlap 579241 579251 ACATGAATGACGGTG ACCGTAAAAAA-TAGCCTTC AACGC GAAGGCTATTTTTTTACGGC TTCTTCTAATGTCGT TERM 936 579241 - 579282 + T 100 -17 -2.9178 | gap 1, opp_overlap 579251, overlap 579240 579251 CATGAATGACGGTGA CCGTAAAAAA-TAGCCTTC AACGC GAAGGCTATTTTTTTACGG CTTCTTCTAATGTCG TERM 937 579271 - 579251 - T 93 -10.5 -5.0538 | opp_overlap 579241 579240 579251 GGTGACCGTAAAAAA TAGCCTTCA ACG CGAAGGCTA TTTTTTTACGGCTTC TERM 938 579251 - 579271 + T 100 -9.8 -5.43866 | opp_overlap 579251, overlap 579241 579240 GGTGACCGTAAAAAA TAGCCTTC AACGC GAAGGCTA TTTTTTTACGGCTTC sspI 579487 - 579269 - | Small acid-soluble spore protein SspI TERM 939 579581 - 579571 - g 78 -5.4 -4.93595 | overlap 579572 ATAAAAATGGAAAAA GCAA CAT TTGC TGGTGGGTGTTTTTG msrA 579526 - 580086 + | Peptide methionine sulfoxide reductase Aflv_0541 580068 - 580832 + | SpoU family rRNA methylase TERM 940 581114 - 581136 + F 100 -11.3 -5.76237 | overlap 581106 GGTACCGCGAGTGCA CTCGTCCCT TATTC AGGGGCGAG TTTTTTATTTATATA pheS 581170 - 582204 + | Phenylalanyl-tRNA synthetase alpha subunit TERM 941 582556 - 582541 - g 73 -7.5 -4.21408 | AACTTTAAAATTAAA CGCGC CAAATT GCGCG GGGAAGAATCGAACG pheT 582220 - 584634 + | Phenylalanyl-tRNA synthetase beta subunit TERM 942 584673 - 584642 - T 100 -13 -4.19735 | opp_overlap 584642 GCGGGTAAAACGAAA CCCCCATCTGATGC ATAA GCATTGGATGGGGG TTTTTATGTGGTGAG TERM 943 584642 - 584673 + T 100 -17.4 -5.00895 | opp_overlap 584642 GCGGGTAAAACGAAA CCCCCATCTGATGC ATAA GCATTGGATGGGGG TTTTTATGTGGTGAG TERM 944 584826 - 584792 - T 80 -10.2 -3.76174 | opp_overlap 584802 584804, overlap 584790 584803 AAATCTATGAAAAGA CCTTTTTAAATTCCTT TTT AAGGTATTTAAAGAGG ATGATGGGATCGGAT TERM 945 584950 - 584926 - T 83 -4.9 -5.2422 | opp_overlap 584926 584933 584942 AAGGACAGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTCCC Aflv_0544 586068 - 585013 - | Transposase Aflv_0545 586309 - 586656 + | hypothetical protein TERM 946 586729 - 586717 - T 70 -3.3 -5.00234 | TAAAAAAGAAACAAA CAGGG TAC CCCTT ATGTAACGTGGAGCT TERM 947 587459 - 587425 - T 80 -10.2 -3.76174 | opp_overlap 587435 587437, overlap 587423 587436 AAATCTATGAAAAGA CCTTTTTAAATTCCTT TTT AAGGTATTTAAAGAGG ATGATGGCATCGGAT TERM 948 587562 - 587538 - T 79 -4.9 -5.07053 | opp_overlap 587538 587545 AAGGACGGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTATC Aflv_0546 589073 - 587625 - | Transposase TERM 949 589481 - 589505 + H 93 -5.8 -5.61881 | opp_overlap 589483 AATATGCATTTACCA GACTTGTC ACAATCTTC GACAAGTC TTTTTATTTTTCAGG comQ 589585 - 590475 + | Competence regulatory protein ComQ comX 590494 - 590652 + | DNA-directed RNA polymerase specialized sigma factor, ComX Aflv_0549 590656 - 592917 + | Signal transduction histidine kinase, contains N-terminal PDZ domain TERM 950 592965 - 592977 + GF 74 -7.7 -3.9122 | CACATTTTAATCGTC GACGA TCA TCGTC TTGTTTGCGAAGGTA comA 592857 - 593594 + | DNA-binding response regulator, NarL family (REC-HTH domains) TERM 951 593596 - 593620 + F 100 -16.5 -5.27023 | ATCATATGTTGTGAA TGCCTTCACCG GAT CGGTGAGGGCA TTTTCTTTTTGAAGT TERM 952 593637 - 593672 + F 70 -9.8 -2.71144 | gap 1, opp_overlap 593668 TTTCTTTTTGAAGTC CGCCATTTCGT-GTCGG TAT CCGACAAAAAAATGGCG TGGTTCGACACCATG TERM 953 593685 - 593668 - f 83 -3.4 -5.626 | opp_overlap 593637 593673 TATCCGACAAAAAAA TGGCGT GGTTCG ACACCA TGTTGGCGGTGAAAG Aflv_0551 593768 - 594166 + | hypothetical protein TERM 954 594283 - 594314 + F 71 -6.6 -4.09739 | AATTGAGATCATGTC CCTTTCTTTTAGGA GCAT TCCTGTTAGAAAGG TTTTCAGGGACTTGA Aflv_0552 595968 - 597329 + | ABC-type sugar transport system, periplasmic component Aflv_0553 597330 - 597980 + | VanZ family membrane protein, implicated in glycopeptide antibiotics resistance Aflv_0554 598120 - 598563 + | Permease, involved in lantibiotic resistance Aflv_0555 599181 - 598621 - | Endonuclease, Uma2 family (restriction endonuclease fold) Aflv_0556 599306 - 599752 + | Transcriptional regulator, MarR family TERM 955 599889 - 599904 + G 70 -7.6 -3.61715 | AGAAGGTTATTCGTC TTCGCT TGCT AGCGAA TTATTAAAAGAAGTA TERM 956 600403 - 600413 + G 86 -6.8 -4.92757 | TATATCGTGTCGCAA GCGA TTG TCGC TTTTCTTGTTGATCG TERM 957 602399 - 602413 + G 72 -7.2 -4.04023 | overlap 602387 TGCTTGCAGGAATTG CGATTA TTT TAATCG TTCTTCTTCGTTCGT TERM 958 602536 - 602547 + G 71 -2.2 -5.1848 | overlap 602532 TATGAAGGCGTGAAC TGGG CTGT TCCA TTTTTTGCGTTCGTT Aflv_0557 599749 - 602871 + | Predicted transporter of the RND superfamily TERM 959 602872 - 602893 + F 91 -10.1 -4.52047 | opp_overlap 602872 CCATTTCTGAAATAA GAGCGGGTG TCGA TGCCCGCTC TTTTGTGATATAATG TERM 960 602893 - 602872 - f 77 -8.7 -3.91716 | opp_overlap 602872 CCATTTCTGAAATAA GAGCGGG TGTCGATG CCCGCTC TTTTGTGATATAATG TERM 961 603356 - 603334 - f 70 -8.4 -3.34522 | opp_overlap 603334 ACATCGTTGAAGTAA CCACGAACGC ATG ACGTTGGTGG TTGGGTAGCTTTCAA zapA 603526 - 603819 + | Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) Aflv_0559 603800 - 604351 + | Membrane protein connecting MutS with cell-division Z-ring TERM 962 604355 - 604373 + F 76 -4.6 -5.14563 | opp_overlap 604355 604344 TATATGGCGTAAAAA CTTCTC CGTCCGA GAGAAG TTTTTTCGTCGAAAG TERM 963 604373 - 604355 - f 71 -5.3 -4.59109 | opp_overlap 604355, overlap 604344 TATATGGCGTAAAAA CTTCTCC GTCCG AGAGAAG TTTTTTCGTCGAAAG TERM 964 604433 - 604419 - gf 100 -5.6 -6.12458 | opp_overlap 604421, overlap 604421 604422 GAAAAAAATAAAAAA GAGGCG ATT CGCCTG CTTGAAACGATCGCT TERM 965 604431 - 604421 - gf 91 -8.2 -4.6155 | opp_overlap 604421, overlap 604419 604422 AAAAAATAAAAAAGA GGCG ATT CGCC TGCTTGAAACGATCG Aflv_0560 604401 - 606110 + | DNA polymerase IV fused to PHP family metal-dependent phosphoesterase TERM 966 606928 - 606951 + GF 84 -5.3 -5.27335 | ACAATTATTGAGAAC GTCGAGTTG CTTGCT CAGCTTGAC TTTTTGTTTGCAAAG mutSB 605965 - 608475 + | DNA mismatch repair protein, MutSB Aflv_0562 608487 - 608894 + | hypothetical protein Aflv_0563 608907 - 608990 + | hypothetical protein TERM 967 608994 - 609009 + F 100 -6.8 -6.04324 | opp_overlap 608994 TTTTTTGCATAAAAG GGTGTC AGCA GGCACC TTTTTTATTTTTTAA TERM 968 610459 - 610448 - g 82 -3 -5.47218 | GTCGACCGAAAAAAA GATA TGAT TATC GCAAGCGGTTATAAC lcfA 609086 - 610762 + | Acyl-CoA synthetase TERM 969 610815 - 610836 + F 88 -8.9 -4.56597 | opp_overlap 610815 TCTTTAAAATAAAAA TATGAATGA TTAT TCATTCATA TTTTTGAAAGGGAGA TERM 970 610836 - 610815 - f 95 -8.9 -5.45802 | opp_overlap 610815 TCTTTAAAATAAAAA TATGAATGA TTAT TCATTCATA TTTTTGAAAGGGAGA TERM 971 611393 - 611379 - g 71 -2.1 -5.20534 | ATGAATGAACAAAAA TACGA TCTTG TCGCA TTGGCGAAACCGGTT Aflv_0565 610860 - 611441 + | Transcriptional regulator, TetR/AcrR family Aflv_0566 611480 - 612247 + | Enoyl-CoA hydratase etfB 612263 - 613036 + | Electron transfer flavoprotein, beta subunit TERM 972 613189 - 613206 + G 75 -8.5 -3.8186 | overlap 613179 TCGGAGCGAGCGTTC GCTCATT AGCA AATGAGC TTATTGCTTACGGTG etfA 613044 - 614030 + | Electron transfer flavoprotein, alpha subunit TERM 973 614031 - 614051 + F 93 -9.7 -5.08255 | opp_overlap 614031 AAAGTACATTCATAA GGCAGAGCG TGA TGCTTTGCC TTTTCTTTTCAGCAT trxA 614177 - 614491 + | Thioredoxin TERM 974 614498 - 614519 + F 100 -13.1 -5.82388 | opp_overlap 614500 CATTTATAATTGACA TACCTCGGA GACA TCCGAGGTA TTTTTTTTGAAATTT TERM 975 614517 - 614500 - f 81 -11.3 -2.96711 | opp_overlap 614498 TTTATAATTGACATA CCTCGGA GACA TCCGAGG TATTTTTTTTGAAAT TERM 976 614595 - 614568 - f 70 -8.6 -3.40403 | opp_overlap 614574 CGTTCTCTACTATAA TGATAACGGTTA ATGA TAATCGTTATCA AAAAAGGGGGATACA TERM 977 615076 - 615058 - g 71 -4.6 -4.68655 | CAATTGCAAAAGAAA CTACAAAA AGA TGTTGTAG CGGCACTTGAAGCTG Aflv_0570 614617 - 615828 + | hypothetical protein TERM 978 615830 - 615862 + F 86 -12.1 -3.4178 | opp_overlap 615830 615837, overlap 615837 CTATTGTTCAATAAA CAGAAGAGCCGCG CATAACA CGCGGCTTTTTTG TTGTGATACAATAGT TERM 979 615862 - 615830 - f 85 -9.1 -4.16016 | opp_overlap 615830 615837, overlap 615837 CTATTGTTCAATAAA CAGAAGAGCCGCGCA TAA CACGCGGCTTTTTTG TTGTGATACAATAGT TERM 980 615855 - 615837 - f 79 -10.2 -3.56559 | opp_overlap 615830 615837, overlap 615830 TCAATAAACAGAAGA GCCGCGCA TAA CACGCGGC TTTTTTGTTGTGATA TERM 981 615837 - 615855 + F 100 -8.8 -5.58179 | opp_overlap 615837 615830, overlap 615830 TCAATAAACAGAAGA GCCGCG CATAACA CGCGGC TTTTTTGTTGTGATA Aflv_0571 615881 - 616855 + | Nucleoside-diphosphate-sugar epimerase Aflv_0572 616827 - 617762 + | hypothetical protein TERM 982 617850 - 617861 + GF 78 -4.4 -5.13137 | CGATTTTTGTTATAG GAAC GATG GTTC TTTTTCATTTATTTG TERM 983 619020 - 619036 + GF 74 -4.3 -4.85129 | overlap 619021 GTCATTTAGATGAGG GGGAGCG ATA CGTTCCG TTTTTCATGTATGGT Aflv_0573 617708 - 619198 + | Membrane-associated sulfatase family enzyme Aflv_0574 619195 - 619920 + | Glycosyltransferase TERM 984 619915 - 619937 + F 95 -9.2 -5.4505 | opp_overlap 619915 CATTCTGTTCAACAA CGCTAGAGAG TAG TTTTCTAGCG TTTTTTCTTGACAAG Aflv_0575 619979 - 620743 + | Uncharacterized conserved secreted or membrane protein TERM 985 621116 - 621081 - g 71 -4.1 -4.88407 | gap 1, opp_overlap 621089 621112 621114, overlap 621084 621085 621089 GTATGGAAGGAAAAA TGAGCAAATACGTCTC TAAAG GCGACGTATTTGG-CA TGGTCATGCATTCGT TERM 986 621113 - 621085 - g 74 -10.4 -2.58788 | opp_overlap 621089 621112, overlap 621084 621081 621089 GGAAGGAAAAATGAG CAAATACGTCTC TAAAG GCGACGTATTTG GCATGGTCATGCATT TERM 987 621291 - 621301 + G 78 -5.4 -5.0538 | overlap 621265 GAACGATGCGCGTAC CGTT AAA AACG TTTTTTAAAGTGACA Aflv_0576 620759 - 621676 + | High-affinity Fe2+ permease TERM 988 621697 - 621678 - f 83 -10.8 -3.69734 | opp_overlap 621678, overlap 621672 AACAAGTGATGTAAA GTACAAGG GGAG CCTTGTAC TTTTTTGCTTAGGAG TERM 989 621678 - 621697 + F 100 -10.8 -5.26875 | opp_overlap 621672 621678 AACAAGTGATGTAAA GTACAAGG GGAG CCTTGTAC TTTTTTGCTTAGGAG TERM 990 622442 - 622459 + GF 76 -2.7 -5.34555 | opp_overlap 622432 622445, overlap 622445 AATTACCGTTTTGGA AAAGGAT ATGT ATCCTTA TTTTTTATAATATCA TERM 991 622445 - 622456 + GF 72 -4.4 -4.74611 | opp_overlap 622432 622445, overlap 622442 TACCGTTTTGGAAAA GGAT ATGT ATCC TTATTTTTTATAATA Aflv_0577 621721 - 623121 + | hypothetical protein TERM 992 623671 - 623661 - gT 74 -4 -4.93079 | AAGAAAATAAACAAA TTGT TGA ACAA ATTACGCGATTTTTA uvrC 623072 - 624895 + | Excinuclease ABC subunit C TERM 993 624891 - 624910 + T 74 -9.3 -3.46285 | opp_overlap 624891, overlap 624884 TTCAAACGTATGAAA GCTGACC ATCATC GGTCAGC TTCATCTTTACGGTC TERM 994 624910 - 624891 - T 84 -10 -3.82097 | opp_overlap 624891 624884 TTCAAACGTATGAAA GCTGACCA TCAT CGGTCAGC TTCATCTTTACGGTC Aflv_0579 625342 - 624899 - | Predicted hydrocarbon binding protein (V4R domain) TERM 995 625047 - 625025 - G 82 -8.4 -4.24342 | opp_overlap 625021 CTGTTGAGCAAGAAA GCCCGCTTCA AGT TGAAACGTGC AATCTTCACTATAAT TERM 996 625776 - 625788 + G 95 -7.7 -5.08011 | overlap 625767 CTTTTATGGAGCAGC TACCG TTC CGGTA TTTTTTAGAAATTTT sdhC 625622 - 626230 + | Succinate dehydrogenase, cytochrome b subunit sdhA 626254 - 628014 + | Succinate dehydrogenase, flavoprotein subunit sdhB 628011 - 628772 + | Succinate dehydrogenase, Fe-S protein subunit TERM 997 628802 - 628780 - f 93 -7.6 -5.4756 | opp_overlap 628780, overlap 628797 AAGTGTAACAAAAAA GGTCGGCTCT TAA AGAGTCGGCC TTATGTTTCATAAAG TERM 998 628780 - 628802 + F 91 -12 -3.86252 | opp_overlap 628780 628797 AAGTGTAACAAAAAA GGTCGGCTCT TAA AGAGTCGGCC TTATGTTTCATAAAG Aflv_0583 628830 - 629279 + | Thioesterase superfamily enzyme gerE 629306 - 629575 + | Transcriptional regulator GerE family TERM 999 629575 - 629618 + F 72 -8.3 -3.60473 | gap 1, opp_overlap 629577 629582, overlap 629577 629582 GGAACTTGAACTATA GAGAGAACCGGCTCGCCT TTTTGTTTT AGGC-AGCCGGTTTTCTA TTGATTTGATGTATG TERM 1000 629577 - 629616 + F 80 -10.9 -3.3692 | gap 1, opp_overlap 629577 629582, overlap 629575 629582 AACTTGAACTATAGA GAGAACCGGCTCGCCT TTTTGTTTT AGGC-AGCCGGTTTTC TATTGATTTGATGTA TERM 1001 629582 - 629611 + F 83 -7.2 -4.76274 | gap 1, opp_overlap 629582 629577, overlap 629577 629575 GAACTATAGAGAGAA CCGGCTCGCCT TTTTGTTTT AGGC-AGCCGG TTTTCTATTGATTTG racE 629646 - 630482 + | Glutamate racemase TERM 1002 630485 - 630505 + F 100 -6.9 -5.94214 | opp_overlap 630485 TCAATTATCTTAAAA TCCTTCG CATTAGC CGAAGGA TTTTTTTGTTCTATT TERM 1003 630505 - 630485 - f 73 -6.9 -4.17023 | opp_overlap 630485 TCAATTATCTTAAAA TCCTTCG CATTAGC CGAAGGA TTTTTTTGTTCTATT TERM 1004 631420 - 631406 - g 70 -7.2 -3.74303 | AAAATGGAAAAGTAA CGTTAA ACT TTAACG AAGCGATTTATGGTA gerM 630574 - 631620 + | Spore germination protein GerM TERM 1005 631661 - 631679 + F 86 -10.3 -4.0031 | AAGATTCATCGTCGA GAGGCAG CATCC CTGCCTC TTATTTCGTGAACAT rph 631714 - 632481 + | Ribonuclease PH TERM 1006 632568 - 632550 - gf 79 -3 -5.40072 | opp_overlap 632550 TTGTTTTCAAAAAAA GGGATCGA CGT TCTCTCCC TCCTTGCCTATGATG TERM 1007 632935 - 632949 + GF 95 -2.8 -6.13503 | overlap 632937 TTGGTGAAAACGGTT TTGGGT ATG ATCCGA TTTTTTTTGTTCCTG Aflv_0588 632454 - 633089 + | Inosine triphosphate pyrophosphatase TERM 1008 633250 - 633264 + G 73 -7.1 -4.08394 | overlap 633262 TGTGCGAGGGAATTG CGACG ACGAA CGTCG TTTTCCAACCGATCT Aflv_0589 633086 - 633598 + | Predicted phosphoesterase TERM 1009 633623 - 633596 - f 86 -7.8 -4.88495 | gap 1, opp_overlap 633596 ACATATACAACAAAA TAGGGGCAA-GAA AAT TCCATCGCCCCTA TTGACTTTTTTCATA TERM 1010 633770 - 633791 + F 100 -10.9 -5.48213 | CCTGGGACGCTAGGA TCCTCTTGC ATGG GCAAGGGGA TTTTTATTTTACATG TERM 1011 633958 - 633979 + F 100 -10.9 -6.25578 | CCTGGGGTGCTAGGA TCCTCTTGC GTGG GCAAGGGGA TTTTTTTTGTTTAGT TERM 1012 634821 - 634803 - g 75 -6 -4.59773 | opp_overlap 634791 GTTCATCGTTAAAAA TGGTGTGT TAT ATACACCA CCAGGATACGTCGGG dat 634216 - 635118 + | Branched-chain amino acid aminotransferase TERM 1013 635371 - 635419 + G 89 -7.5 -5.00196 | gap 1, overlap 635412 GCGGGAAGGATGCAA GCCTTTTCGCCCCTTTGGTCCG CACGGA CTGAT-GGAGGGGTGAGAAGGC TTTTCTTATTTCACA ilvB 635365 - 637173 + | Acetolactate synthase large subunit ilvH 637167 - 637688 + | Acetolactate synthase small subunit TERM 1014 638066 - 638077 + G 78 -5.8 -4.8622 | overlap 638065 ATCGTTCCGCCAAGC GACG TTGA CGTC TTTTTAGTTGCACCA TERM 1015 638555 - 638534 - g 75 -2.3 -5.37593 | overlap 638535 GCGGAAATGAAAAAA GTGCTTGAA GATA TTCAAACAG GCAAGTTTGCGAAAG ilvC 637706 - 638731 + | Ketol-acid reductoisomerase TERM 1016 640197 - 640214 + G 82 -7.7 -4.44667 | opp_overlap 640188 GCAAAAGCATATATT CATGCGG TTAA TCGCATG TTTGTTATTGAAAAG leuA 638718 - 640262 + | 2-isopropylmalate synthase TERM 1017 640257 - 640245 - f 71 -6.2 -4.16937 | ATGAAAGAAGAACAA GCGC TTGCC GCGC AATAACAAAGGGGGA TERM 1018 641162 - 641146 - g 75 -3 -5.15634 | gap 1 TATTGCAGGAAAAAA CAAAGCG AATC CGCTT-G CAACGATTTTGTCAG leuB 640280 - 641389 + | Isocitrate/isopropylmalate dehydrogenase TERM 1019 642513 - 642499 - g 86 -2.7 -5.79588 | opp_overlap 642506 GTAAAAGGAAAAAAA GTCGC ACCGG GCGTC AGAGCGCTCGTCGTT leuC 641401 - 642816 + | 3-isopropylmalate dehydratase large subunit leuD 642828 - 643412 + | 3-isopropylmalate dehydratase small subunit TERM 1020 643428 - 643404 - f 100 -8.5 -5.86061 | opp_overlap 643404 GCCTACGAAAAAAAA CGCTCTTGACA TTT TGTCGAGGGCG TTTTTCGTTGAATTT TERM 1021 643404 - 643428 + F 100 -12.9 -4.90917 | opp_overlap 643404 GCCTACGAAAAAAAA CGCTCTTGACA TTT TGTCGAGGGCG TTTTTCGTTGAATTT TERM 1022 643887 - 643866 - g 71 -2.3 -5.09225 | gap 1, overlap 643869 AGTTTAGTGAAAAAA TGATTCGTTC ACA GTACGAA-CA ACAAGCAAAACAATA Aflv_0598 643496 - 644428 + | TPR repeats containing protein TERM 1023 644478 - 644491 + F 85 -3.9 -5.61881 | CCTACATATATGTAG TTCAT TTAC ATGAA TTTTTATTTTTGAAG tig 644523 - 645809 + | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) TERM 1024 645856 - 645814 - f 72 -9.2 -3.44146 | opp_overlap 645814 645822 645825, overlap 645818 645822 TTGTTGCATAATGAA TGGAGAAAGAACAAGGTGCA TCA CGTGCCTTGTTCTTTCCACA TATAGTCAAGTATGA TERM 1025 645814 - 645856 + F 77 -10.7 -2.80443 | opp_overlap 645814 645818 645822, overlap 645822 645825 TTGTTGCATAATGAA TGGAGAAAGAACAAGGTGC ATCAC GTGCCTTGTTCTTTCCACA TATAGTCAAGTATGA TERM 1026 645852 - 645818 - f 76 -10.8 -2.62043 | opp_overlap 645814 645822 645825, overlap 645814 645822 TGCATAATGAATGGA GAAAGAACAAGGTGCA TCA CGTGCCTTGTTCTTTC CACATATAGTCAAGT TERM 1027 645822 - 645848 + F 77 -9.5 -3.59738 | opp_overlap 645818 645814 645822, overlap 645814 645825 TAATGAATGGAGAAA GAACAAGGTGC ATCAC GTGCCTTGTTC TTTCCACATATAGTC TERM 1028 646287 - 646252 - g 82 -6 -5.06451 | GACGAGGCGAAAAAA GCGCTTTCTGTGGCAG TATA CAACCACTACAAGCGC ATTAATTCAAACAGT clpX 646003 - 647265 + | ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) TERM 1029 647263 - 647314 + F 100 -18.6 -4.69214 | gap 1, opp_overlap 647275, overlap 647275 AGAAAAACATCAGCG TAAATAGAAAAAGATCGATTTTCCG AAT CGGAAAGTCGATCTTTTT-TGTTTA TTTCTTTCTTCGCTC TERM 1030 647275 - 647303 + F 100 -16.9 -5.85425 | opp_overlap 647275, overlap 647263 GCGTAAATAGAAAAA GATCGATTTTCCG AAT CGGAAAGTCGATC TTTTTTGTTTATTTC TERM 1031 647303 - 647275 - f 100 -14.7 -5.19879 | opp_overlap 647275 647263 GCGTAAATAGAAAAA GATCGATTTTCCG AAT CGGAAAGTCGATC TTTTTTGTTTATTTC lonB 647308 - 649029 + | Lon-like ATP-dependent protease TERM 1032 649036 - 649062 + F 100 -16 -5.0538 | opp_overlap 649033 649032 649036 CGAATGTGAAAGCGA TCGGCTTCAACG GAG CGTTGAAGTCGA TTTTTTACGATGAAA TERM 1033 649062 - 649036 - f 91 -13.8 -2.66326 | opp_overlap 649036, overlap 649033 649032 CGAATGTGAAAGCGA TCGGCTTCAACG GAG CGTTGAAGTCGA TTTTTTACGATGAAA TERM 1034 649701 - 649677 - g 70 -2.7 -5.08088 | overlap 649680 AAGCTTGAAGAAAAA CAACGATTGCT TGA AGCGGTCGATG TGAAAGAGCGTGTGC TERM 1035 650646 - 650634 - g 80 -6.3 -4.85433 | ACAGAAATTGAAAAA TTGCA CAT TGCAA AAGAACATTTATTAC TERM 1036 651172 - 651162 - g 74 -6.8 -4.26076 | GGAGCGGTACCAAAA GACG GTC CGTC AGCAGGGATTACGAT lonA 649143 - 651467 + | Class III heat-shock ATP-dependent Lon protease TERM 1037 651659 - 651673 + G 89 -6.4 -5.27476 | ACATTGAACTTTTAT CGCATT AAC GATGCG TTTTATTTTGTTGAC ysxC 651464 - 652045 + | GTP-binding protein YscX, possible signaling factor TERM 1038 652041 - 652077 + T 84 -12.6 -2.96842 | opp_overlap 652050, overlap 652050 CATTGCAAAAATGGA TGTAAAAAATGTGGGT GATTG ACCCACATTTTTTGTA TAGTTATCCTTTTTT TERM 1039 652068 - 652050 - T 90 -8.9 -5.10497 | opp_overlap 652041 652050 AATGGATGTAAAAAA TGTGGGT GATTG ACCCACA TTTTTTGTATAGTTA TERM 1040 652050 - 652068 + T 95 -8.9 -5.42131 | opp_overlap 652050, overlap 652041 AATGGATGTAAAAAA TGTGGGT GATTG ACCCACA TTTTTTGTATAGTTA Aflv_0604 652581 - 652081 - | hypothetical protein TERM 1041 653083 - 653102 + G 73 -3.5 -5.07652 | GGTGAAACGCAAATT CTTGGGC AAGTGC GCACAAG TTTTCTTTTAGCGCA hemA 652732 - 654066 + | Glutamyl-tRNA reductase TERM 1042 654164 - 654199 + G 74 -6.9 -4.40333 | opp_overlap 654168, overlap 654165 654169 654171 TCGATTTTCTTCACC ACAACCGGAAGGCAA ACCGCA TTGCTTTCGGGTTGC TTTCTATTGTTTGGG TERM 1043 654165 - 654198 + G 77 -10.4 -3.23115 | opp_overlap 654168, overlap 654164 654169 654171 CGATTTTCTTCACCA CAACCGGAAGGCAA ACCGCA TTGCTTTCGGGTTG CTTTCTATTGTTTGG TERM 1044 654207 - 654225 + G 88 -3.2 -5.75538 | CGGGTTGCTTTCTAT TGTTTG GGGGATG CAAACA TTTTTCTTTTTTGCG TERM 1045 654268 - 654254 - g 73 -8.6 -3.58533 | opp_overlap 654254 CGAGAATGGTCGAAA CAGGAA GAT TTCCTG TTTTAACGCTTGCGG TERM 1046 654254 - 654268 + G 79 -8.6 -4.14392 | opp_overlap 654254 CGAGAATGGTCGAAA CAGGAA GAT TTCCTG TTTTAACGCTTGCGG hemX 654079 - 654894 + | ABC-type transport system involved in cytochrome c biogenesis, permease component TERM 1047 655684 - 655696 + G 70 -7.7 -3.61398 | GATGAAGATGCGATT GTGCT TAC AGCAC TTGTTGCAACACCGA hemC 654901 - 655842 + | Porphobilinogen deaminase (hydroxymethylbilane synthase) hemD 655843 - 656592 + | Uroporphyrinogen-III synthase hemB 656594 - 657568 + | Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) TERM 1048 658218 - 658230 + G 71 -4.7 -4.58283 | opp_overlap 658205, overlap 658216 658215 CATGGGGGTCGTTCC GCCAG AGC CGGGC TTTTTACAAGGGTTG hemL 657547 - 658863 + | Glutamate-1-semialdehyde aminotransferase TERM 1049 658850 - 658871 + F 100 -7.3 -5.64274 | gap 1, opp_overlap 658850 CGTTTGCGAAAATGA GCGATTGCCT GTA AGGC-GTCGC TTTTTTTATGCATAC TERM 1050 658982 - 659010 + G 86 -10.3 -3.86995 | opp_overlap 658979, overlap 658986 TTGAAGAAGCGATTG CTTTTCGACGTGA GCA TCACGTCGATCAG TTATTATCAATTTCA TERM 1051 658986 - 659006 + G 95 -14.1 -2.69073 | opp_overlap 658979, overlap 658982 AGAAGCGATTGCTTT TCGACGTGA GCA TCACGTCGA TCAGTTATTATCAAT spoVID 658927 - 659835 + | Stage VI sporulation protein D (LysM domain) Aflv_0612 659845 - 660759 + | Aminoglycoside phosphotransferase family enzyme Aflv_0613 660968 - 660744 - | hypothetical protein TERM 1052 660962 - 660979 + g 100 -9.9 -5.62045 | CTTTTCGTATATTTA GCTCCAT TCAT ATGGAGC TTTTTTATTATATGT TERM 1053 661273 - 661301 + H 100 -14 -5.86976 | opp_overlap 661272 661271 661269, overlap 661264 GTACCGCGAAAGAGT CTCCTTTCGTCC TTTTC GGATGAAAGGAG TTTTTTATTTTGTAA TERM 1054 663797 - 663783 - g 71 -4.3 -4.86033 | overlap 663795 AAACGCCTAGAAAAA GAGTT ACAAA AACTC GACCAAGAAGTCGAG TERM 1055 663812 - 663795 - g 95 -7.7 -4.92363 | overlap 663783 AAAGAGTTACAAAAA CTCGACC AAGA AGTCGAG CGCGTGCAAAAGAAA Aflv_0614 661326 - 663953 + | Valyl-tRNA synthetase TERM 1056 663966 - 663988 + F 91 -12.1 -3.87149 | opp_overlap 663966 663972 TAGTTTTATGATGAA GACGAATCC ATTTC GGATTCGTC TTTCACTTTAATAGA TERM 1057 663988 - 663966 - f 85 -12.8 -3.21416 | opp_overlap 663966, overlap 663972 TAGTTTTATGATGAA GACGAATCCA TTT CGGATTCGTC TTTCACTTTAATAGA TERM 1058 664127 - 664101 - g 71 -8.8 -3.28783 | TTAAAACGAATGGAA TGGATGATGGAA AAG CTCGATCATCCA GAGCGTCGCATTAAA TERM 1059 664691 - 664704 + G 71 -6.7 -4.09685 | AGTATATGTGCTCGG TCGTG ATTT CACGA TTTTCGCCCATGAGC TERM 1060 664826 - 664814 - g 74 -4.8 -4.76892 | ACATCAAGTGAAAAA CGCA TCCCT TGCG CTCATGGTCGCCGAC folC 664017 - 665321 + | Folylpolyglutamate synthase TERM 1061 665546 - 665533 - g 78 -2.3 -5.55664 | TCACCATTAAAAAAA GAGCT TGGA AGCAC GTCGAATATAAGCGT TERM 1062 668227 - 668213 - g 74 -4.2 -5.01732 | AACTGCTTGAAAAAA CGGTGA CAG TAACCG TTCAAGCGATCCCAG Aflv_0616 665380 - 668802 + | Bacterial surface protein containing Ig-like domains TERM 1063 668850 - 668870 + F 88 -8.3 -4.72272 | opp_overlap 668831 GACGCTATTTGTCAT CATCAGCTT GCT AAGCGGATG TTTTTCATCGAAAGA Aflv_0617 668950 - 669669 + | Ankyrin repeats containing protein TERM 1064 669658 - 669677 + T 72 -3.5 -5.14682 | opp_overlap 669658, overlap 669653 CAACTAAAGGAAAAA GGAGCCA AGTAGC TAGCTCC TTTTCTTTATTGTAC TERM 1065 669677 - 669658 - T 83 -6.4 -5.04222 | opp_overlap 669658 669653 CAACTAAAGGAAAAA GGAGCCAA GTAG CTAGCTCC TTTTCTTTATTGTAC Aflv_0618 671321 - 669684 - | hypothetical protein TERM 1066 671283 - 671271 - G 79 -3.3 -5.31275 | overlap 671273 671274 TCCGATGATAAAAAA GACGG TGA CCGTT AACATAACGAGCACG Aflv_0619 671903 - 671334 - | Uncharacterized conserved secreted protein, predicted component of Type II secretory pathway Aflv_0620 672519 - 671887 - | Uncharacterized conserved protein, predicted component of Type II secretory pathway Aflv_0621 672469 - 673752 + | Uncharacterized conserved secreted protein, predicted component of Type II secretory pathway Aflv_0622 673740 - 674495 + | PRC-barrel domain containing protein Aflv_0623 674485 - 675753 + | Uncharacterized conserved secreted, VanW family pilB 675750 - 677411 + | Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB pilT 677413 - 678456 + | Tfp pilus assembly protein, pilus retraction ATPase PilT TERM 1067 678535 - 678514 - g 85 -4.3 -5.55664 | opp_overlap 678532, overlap 678516 GGACGAGTAAAAAAA GGGACGATG GTTG CTTCGTCGC GTCGCGATGTGATGA TERM 1068 679278 - 679294 + G 73 -3.6 -5.0133 | GCTTGCTCGTATGAC GCGCAC ATTAA GTTCGC TTTTTTCAAGCGCTG pulF 678463 - 679674 + | Type II secretory pathway component PulF pulG 679750 - 680289 + | Type II secretory pathway pseudopilin PulG TERM 1069 680540 - 680507 - g 70 -7.5 -3.86015 | gap 1, opp_overlap 680508, overlap 680508 680513 TATGTGTTGCAGAAA GGGAAATGTCGCGC GTGTTCA GCGCG-CATTTCCT TTGTTTATCCGTTCG TERM 1070 680508 - 680539 + G 100 -11 -4.59089 | gap 1, opp_overlap 680508 680507 680513 ATGTGTTGCAGAAAG GGAAATGTCGCGC GTGTTCA GCGCG-CATTTCC TTTGTTTATCCGTTC TERM 1071 680539 - 680508 - g 79 -11 -2.91395 | gap 1, opp_overlap 680508, overlap 680507 680513 ATGTGTTGCAGAAAG GGAAATGTCGCGC GTGTTCA GCGCG-CATTTCC TTTGTTTATCCGTTC TERM 1072 680887 - 680908 + G 90 -2.3 -6.02914 | gap 1, overlap 680868 680888 CGGTTTGGCTCTTGG GGCCAA-ACT AAC AGTGTTGGCG TTTTTTTTATCTACG pulO 680330 - 681079 + | Type II secretory pathway, prepilin signal peptidase PulO TERM 1073 681960 - 681946 - g 70 -7.1 -3.745 | overlap 681944 TGATCGATTAAAAGA GCGAC TCGAT GTCGC CGTTGAAACGTTGAC Aflv_0629 681092 - 682060 + | Tfp pilus assembly protein, ATPase PilM TERM 1074 682133 - 682148 + GF 73 -2.5 -5.17488 | overlap 682132 682131 AGCTGTTTTATTGAT CGTTG GCGCGA CGACG TTTTATTTTACTGTT Aflv_0630 682038 - 682625 + | Fimbrial assembly protein PilN TERM 1075 682845 - 682855 + GF 78 -4 -5.12971 | overlap 682834 TTCCTGTTCAACCGT TTGT CGA ACAA TTTTTATTAGATATT Aflv_0631 682592 - 683248 + | Pilus assembly protein PilO TERM 1076 683605 - 683590 - g 71 -4 -4.77173 | gap 1 TTGTGACAAAACAAA GTGA-CG GTA CGATCAC ATATGCCGTTTGTTT pulE 683262 - 683702 + | Pilus assembly protein PilE TERM 1077 683731 - 683749 + F 100 -6.7 -6.71862 | GAAAACCTTCCGCAA CGAGACG ACAAA TGTCTCG TTTTTTTTTTCTTTT TERM 1078 684102 - 684081 - g 77 -6.5 -4.73092 | ACAACTGAAAATAAA CCAGCATCG ACAG CGACGTTGG AACAAGAACAAAAAG spoIIB 683835 - 684590 + | Stage II sporulation protein B TERM 1079 684591 - 684605 + F 100 -10 -5.93809 | opp_overlap 684591 CATGTTTTACATTAA GAAGCG AGT CGCTTC TTTTTTTTGTCGAAC TERM 1080 684605 - 684591 - f 75 -10 -3.2614 | opp_overlap 684591 CATGTTTTACATTAA GAAGCG AGT CGCTTC TTTTTTTTGTCGAAC TERM 1081 684893 - 684882 - g 100 -5.8 -6.09888 | TGGCAACAAAAAAAA GACG CGTG CGTC ATCGGTGCAGATACG maf 684693 - 685271 + | Nucleotide-binding protein implicated in inhibition of septum formation spoIVCA 687112 - 685706 - | Site-specific recombinase spoIVCA TERM 1082 686043 - 686057 + g 74 -4.2 -5.03227 | overlap 686044 CGAAGCCGTTCTTCC AGAGCT TCC AGCTCC TTTTCTTTCTCATCT TERM 1083 686044 - 686056 + g 70 -7.7 -3.60309 | overlap 686043 GAAGCCGTTCTTCCA GAGCT TCC AGCTC CTTTTCTTTCTCATC TERM 1084 686821 - 686843 + g 74 -9.2 -3.32819 | opp_overlap 686814 686818 686842 TAAACTTACAACCGT GCTGTTCGAA TAT TTCTAACAGC TTGTACAAATCTGTA TERM 1085 687154 - 687134 - R 93 -10.4 -4.82901 | opp_overlap 687136, overlap 687136 TCCCTCCTATAAAAA CAGGCGGG AGCGA CCCGCCTA TCTAAATCTTTAGCG TERM 1086 687136 - 687152 + r 78 -10.8 -2.96638 | opp_overlap 687136 687134 CCTCCTATAAAAACA GGCGGG AGCGA CCCGCC TATCTAAATCTTTAG TERM 1087 687152 - 687136 - R 88 -10.8 -4.03995 | opp_overlap 687136, overlap 687134 CCTCCTATAAAAACA GGCGGG AGCGA CCCGCC TATCTAAATCTTTAG lexA 687757 - 687170 - | SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase) TERM 1088 687318 - 687342 + g 90 -10.7 -4.01137 | opp_overlap 687313 CTTTTCAATACTGCC TCGCCGTCG ATCAGCA CGGCGGCGA TTTCTCCATTGTCTA TERM 1089 687745 - 687761 + g 71 -2.1 -5.10461 | overlap 687740 687746 GTTTTTTAGCCAAGT CCGCTTG TGT CATGCGA TTTTTCTTCCGTAAC Aflv_0638 687899 - 687735 - | hypothetical protein TERM 1090 687870 - 687829 - G 100 -13.4 -3.38812 | opp_overlap 687832 687836, overlap 687832 687836 TCCTTTCTAACAATA TTATAAAGCAATACTGTA ATTTTG TACAGTATTGCTTTATTA AGTGTGAAAAAAACG TERM 1091 687867 - 687832 - G 100 -15.1 -2.85545 | opp_overlap 687832 687836, overlap 687829 687836 TTTCTAACAATATTA TAAAGCAATACTGTA ATTTTG TACAGTATTGCTTTA TTAAGTGTGAAAAAA TERM 1092 687832 - 687867 + g 100 -15.1 -3.12351 | opp_overlap 687829 687832 687836, overlap 687836 TTTCTAACAATATTA TAAAGCAATACTGTA ATTTTG TACAGTATTGCTTTA TTAAGTGTGAAAAAA TERM 1093 687863 - 687836 - G 100 -11.5 -4.10178 | opp_overlap 687836 687832, overlap 687832 687829 TAACAATATTATAAA GCAATACTGTA ATTTTG TACAGTATTGC TTTATTAAGTGTGAA TERM 1094 687836 - 687863 + g 100 -11.5 -4.23213 | opp_overlap 687832 687829 687836, overlap 687832 TAACAATATTATAAA GCAATACTGTA ATTTTG TACAGTATTGC TTTATTAAGTGTGAA Aflv_0639 687974 - 688189 + | Predicted transcriptional regulator, xre family Aflv_0640 688339 - 688515 + | hypothetical protein TERM 1095 688507 - 688518 + GF 76 -7.2 -4.17048 | GAAGAAGCTGAATTC GCCC TCTA GGGC TTCTTTTCGGAAGGA Aflv_0641 688484 - 688963 + | hypothetical protein Aflv_0642 688969 - 689172 + | hypothetical protein TERM 1096 689367 - 689349 - g 73 -10.4 -2.53409 | opp_overlap 689348, overlap 689336 689334 689341 689348 689344 CACGAATTTATCAAC TCGTATCA AAT TGATACGA CTTGGCTCAAAGCCC Aflv_0643 689169 - 689933 + | Phage related anti-repressor protein Aflv_0644 690166 - 690429 + | hypothetical protein Aflv_0645 690426 - 690653 + | hypothetical protein TERM 1097 690818 - 690795 - g 100 -8.8 -5.64873 | opp_overlap 690795 690796, overlap 690796 TGCAACAAGAAAAAA CGGCCAGCGC GGCA ACGCTAGCCA TTTAATCACAACTCA TERM 1098 690817 - 690796 - g 86 -10.1 -3.97297 | opp_overlap 690796 690795, overlap 690795 GCAACAAGAAAAAAC GGCCAGCGC GGCA ACGCTAGCC ATTTAATCACAACTC Aflv_0646 690650 - 690823 + | hypothetical protein Aflv_0647 690924 - 691172 + | hypothetical protein TERM 1099 691197 - 691178 - f 100 -10 -6.11229 | AGCAAAATAAAAAAA GCTTCGCC AAAC GGCAAAGC ACTTCACATCACACA Aflv_0648 691243 - 691560 + | RecB family endonuclease TERM 1100 692657 - 692641 - g 80 -6.5 -4.79826 | opp_overlap 692641 692643 ATATATCACCAAAAA CAGCATC GAA GAAGCTG TATATGAGGCGCTTG Aflv_0649 691676 - 692725 + | Superfamily II DNA/RNA helicase, SNF2 family Aflv_0650 692730 - 693623 + | Phage-related protein, endonuclease of lambda exonuclease family Aflv_0651 693625 - 694494 + | Phage-associated ATPase TERM 1101 694667 - 694632 - g 78 -9.9 -3.41527 | gap 1, opp_overlap 694641, overlap 694621 694620 694633 CAATGGTTACGATAA CCTTCCA-GATGGCAT TTACG ACGCCATCTTGGAAGA TGTGCAATTCCGCGT TERM 1102 694666 - 694633 - g 76 -11.2 -2.64595 | gap 1, opp_overlap 694641, overlap 694620 694632 AATGGTTACGATAAC CTTCCA-GATGGCAT TTACG ACGCCATCTTGGAAG ATGTGCAATTCCGCG Aflv_0652 694546 - 695016 + | hypothetical protein TERM 1103 695653 - 695665 + G 74 -4.8 -4.83169 | overlap 695649 TAAATGAATTGCCGC GCGA AGTGG TCGC TTTTTATGAAAACAT Aflv_0653 695028 - 696716 + | DNA polymerase family B Aflv_0654 696729 - 697238 + | Phage-related protein, containing Zn-ribbon domain Aflv_0655 697241 - 697630 + | Phage-encoded dCTP pyrophosphatase TERM 1104 697672 - 697645 - g 100 -13.6 -3.37879 | opp_overlap 697649, overlap 697649 ATGAAGCGCAAGCAA GAAAGGGAGAAA ACCA CTTCTCCCTTTC ATCCAAACGTTATGG TERM 1105 697649 - 697668 + G 70 -7.9 -3.73072 | opp_overlap 697645 697649 AGCGCAAGCAAGAAA GGGAGAA AACCAC TTCTCCC TTTCATCCAAACGTT TERM 1106 697668 - 697649 - g 82 -8.6 -4.32951 | opp_overlap 697649, overlap 697645 AGCGCAAGCAAGAAA GGGAGAAA ACCA CTTCTCCC TTTCATCCAAACGTT Aflv_0656 697630 - 697863 + | hypothetical protein TERM 1107 699173 - 699200 + G 78 -9.8 -3.53091 | opp_overlap 699166 TTTAAAACGCTCGCT TCTGGCGATCCA ATCA TGGTTCGCCCGA TTTACCAACAGCCGT Aflv_0657 697868 - 699730 + | Phage associated DNA primase TERM 1108 699715 - 699743 + F 78 -7.6 -4.32131 | opp_overlap 699714 AAAGGTTACAGATAT GGTTACAGAT CAATGAAAC ATCTGTAACC TTTCATTTCTTTTAA TERM 1109 699841 - 699856 + F 100 -4.8 -6.04419 | opp_overlap 699841 699843 TGTAACCTTTATAAT TATTGA TATA TCAATA TTTTTTTATTATTTT TERM 1110 700550 - 700591 + G 91 -13.1 -2.64616 | opp_overlap 700558, overlap 700556 700558 AATTAAAAAGCGAAT CAAAGAAAGCCTCTTCTGC ATGT GCGGATGAGGCTGTTTTTG TCGTGTAAATGCCAC xpf 700080 - 700580 + | DNA-directed RNA polymerase specialized sigma subunit TERM 1111 700556 - 700585 + F 90 -8.5 -4.95155 | opp_overlap 700558, overlap 700550 700558 AAAGCGAATCAAAGA AAGCCTCTTCTGC ATGT GCGGATGAGGCTG TTTTTGTCGTGTAAA TERM 1112 700558 - 700583 + F 88 -11.1 -4.09649 | opp_overlap 700558, overlap 700556 700550 AGCGAATCAAAGAAA GCCTCTTCTGC ATGT GCGGATGAGGC TGTTTTTGTCGTGTA TERM 1113 700583 - 700558 - f 88 -8.9 -4.57304 | opp_overlap 700558 700556 700550 AGCGAATCAAAGAAA GCCTCTTCTGC ATGT GCGGATGAGGC TGTTTTTGTCGTGTA TERM 1114 700632 - 700660 + F 90 -10.4 -4.42653 | AGTCCTCCTTTTTCT TGAGTGCCTAGT CATAT GCTAGGCACTTA TTTTATGCATGGGGT TERM 1115 700844 - 700859 + G 100 -6.8 -5.64421 | opp_overlap 700844 GCGTAAATAAATTTA GCATCC TTCG GGGTGC TTTTTTGTTTGGGGT Aflv_0659 700816 - 701178 + | Restriction endonuclease, McrA/HNH family, phage related TERM 1116 701455 - 701445 - g 71 -4.6 -4.62441 | CTTTACACAAATAAA GCCG GAG CGAC GAATGAAAGAAAGAC Aflv_0660 701229 - 701618 + | Phage terminase, small subunit Aflv_0661 701615 - 703339 + | Phage terminase, large subunit TERM 1117 704154 - 704176 + GF 100 -8.4 -5.31059 | opp_overlap 704147 704154, overlap 704147 GATAAGAGGACAGTA GCTGGCATTT TTG GGGTGCCAGC TTTTTTACTTGGTGT TERM 1118 704297 - 704267 - gf 86 -12 -3.11564 | overlap 704265 704271 GAAAGGGATTGAACA GGAACTGACAAGAA AAC TTCTCATCAGTCCC GACCTTTATTTCAAA TERM 1119 704498 - 704488 - gf 70 -5.4 -4.36914 | TCCCTCTTGACAAAA TTGG CGA CCAA AACAAATTGAAAGGT Aflv_0662 703329 - 704540 + | Phage portal protein Aflv_0663 704512 - 705132 + | Phage head maturation protease TERM 1120 705839 - 705828 - gf 93 -2.2 -6.11243 | overlap 705829 ATGTAACAAAAAAAA TCGC TCGC GCAA TTGCGAAGGCGTTGG Aflv_0664 705095 - 706369 + | Phage major capsid protein Aflv_0665 706377 - 706562 + | Phage related protein TERM 1121 706707 - 706682 - g 74 -4.6 -4.87626 | opp_overlap 706682 CTTGAAGACGAAAAA GGGTTGGTGC TGGATG GTGCCAACCC TTATCATTTGATGTT TERM 1122 706682 - 706707 + G 80 -9.7 -3.64523 | opp_overlap 706682 CTTGAAGACGAAAAA GGGTTGGTGCT GGAT GGTGCCAACCC TTATCATTTGATGTT Aflv_0666 706562 - 706837 + | Phage related protein Aflv_0667 706818 - 707183 + | Phage related protein Aflv_0668 707195 - 707500 + | Prophage pi2 protein Aflv_0669 707454 - 707876 + | Phage related protein Aflv_0670 707860 - 708198 + | Phage related protein Aflv_0671 708203 - 708781 + | Phage major tail protein TERM 1123 708818 - 708842 + G 84 -10.8 -3.57651 | opp_overlap 708818 708817 708816 GGTAATCAACAAATC GGGTTAAAGG CGACA CCTTTAGCCC TTCTCTACTATAAAC Aflv_0672 708785 - 709132 + | Phage related protein Aflv_0673 709300 - 712251 + | Phage-related tail protein TERM 1124 712294 - 712314 + G 100 -11.2 -5.09259 | opp_overlap 712289 712292 AAGAGGACAATCAGT GGAGCTGA AATCA TCAGCTCC TTTTCTTTTACAATC Aflv_0674 712253 - 713116 + | Phage-related putative tail protein TERM 1125 713132 - 713147 + G 75 -3.2 -5.08824 | opp_overlap 713132 AGAGGTGAAGCAAAT GCCG GAAAAAAG CGGC TTTTTTGACTCAACG TERM 1126 713352 - 713334 - g 89 -10.4 -3.96531 | GGATACATGTACAAA GTGTATGA CGG TCATACAC TCACTATTGACACTG Aflv_0675 713121 - 714755 + | Phage-related putative tail protein Aflv_0676 714767 - 715150 + | hypothetical protein TERM 1127 715318 - 715336 + F 86 -4.5 -5.4833 | opp_overlap 715318 GATAATGCGACATAA CACCGAT TTTAT AACGGTG TTTTTTATTAGGTGG Aflv_0677 715358 - 716503 + | Phage related protein Aflv_0678 716541 - 716759 + | Phage-related XpaF1 protein, involved in cell lysis Aflv_0679 716756 - 717016 + | hypothetical protein TERM 1128 717186 - 717174 - g 91 -7.7 -4.91084 | GATTGAAGAACAAAA TGCGT TAT ACGCA CAAGGTCGCGCGAAG ycdD 717013 - 717654 + | L-alanoyl-D-glutamate peptidase-related protein containing SLH domain TERM 1129 717659 - 717678 + T 100 -11.4 -5.75599 | opp_overlap 717659 717655 TGTTGAAATAATGAA TCCCTGCC GATT GGCGGGGA TTTTTTTATGCTTTC TERM 1130 717678 - 717659 - T 74 -9.2 -3.61652 | opp_overlap 717659, overlap 717655 TGTTGAAATAATGAA TCCCTGCC GATT GGCGGGGA TTTTTTTATGCTTTC Aflv_0681 717944 - 717684 - | Metal-binding Membrane-associated protein Aflv_0682 718159 - 717941 - | Predicted transcriptional regulator, xre family Aflv_0683 718435 - 718638 + | hypothetical protein Aflv_0684 718685 - 718855 + | hypothetical protein TERM 1131 718881 - 718908 + F 95 -12.1 -4.2008 | opp_overlap 718881 718885 GCCACAGACTAGCAA GGAACACGGGT GGGCAG ACTCGTGTTCC TTTATTACCATGTAT TERM 1132 718908 - 718881 - f 73 -9.9 -3.26545 | opp_overlap 718881, overlap 718885 GCCACAGACTAGCAA GGAACACGGGT GGGCAG ACTCGTGTTCC TTTATTACCATGTAT TERM 1133 720115 - 720105 - g 78 -5.4 -5.00884 | ATCGCGTTGAAAAAA TCGA GCG TCGA GAAGTTGACCGAAAG ftsK 718988 - 720160 + | FtsK/SpoIIIE family protein (ATPase) TERM 1134 720818 - 720796 - f 91 -7.7 -5.22039 | opp_overlap 720797, overlap 720797 CTTAAAGTGAAAAAA GGCCTACTC GATTT GAGTAGGCT TTTTTTATAACATAG TERM 1135 720817 - 720797 - f 88 -11.2 -3.72139 | opp_overlap 720797, overlap 720796 TTAAAGTGAAAAAAG GCCTACTC GATTT GAGTAGGC TTTTTTTATAACATA TERM 1136 720797 - 720817 + F 100 -11.9 -5.626 | opp_overlap 720796 720797 TTAAAGTGAAAAAAG GCCTACTCG ATT TGAGTAGGC TTTTTTTATAACATA TERM 1137 721508 - 721464 - g 70 -5.1 -4.50761 | gap 1, overlap 721467 ATGAAGCGAAACAAA TGATCGGACGTA-CGCCA GGAAACGTTG TGGCGCTTCGTCCGATGA AAGATGGAGTGATCG mreB 721241 - 722326 + | Actin-like ATPase involved in cell morphogenesis TERM 1138 722528 - 722507 - g 81 -10.9 -3.30243 | gap 1, opp_overlap 722507 ATCGATCGTGCATAA GCCCGC-ACA GTT TGTTGCGGGC TTCTTTGAAAATGTG TERM 1139 722507 - 722528 + G 90 -10.9 -3.93256 | gap 1, opp_overlap 722507 ATCGATCGTGCATAA GCCCGC-ACA GTT TGTTGCGGGC TTCTTTGAAAATGTG TERM 1140 722809 - 722789 - g 95 -4.7 -5.75342 | overlap 722791 CGGTGTGAAAAAAAA TATGGCG GTCATTA CGCCACA AGGACTAATCGGCAA TERM 1141 722807 - 722791 - g 70 -5.1 -4.52949 | overlap 722789 GTGTGAAAAAAAATA TGGCG GTCATTA CGCCA CAAGGACTAATCGGC mreC 722346 - 723206 + | Cell shape-determining protein mreD 723203 - 723727 + | Cell shape-determining protein minC 723696 - 724457 + | Septum formation inhibitor minD 724454 - 725266 + | Septum formation inhibitor-activating ATPase (activate MinC) TERM 1142 725266 - 725285 + F 100 -10 -5.31059 | overlap 725256 GTTTAGCGCTCGTTA GCACTTCC ATTT GGAGGTGC TTTTTTCATTCATAT spoIVFA 725354 - 726085 + | Stage IV sporulation protein FA (inhibition of SpoIVFB (negative regulation) and hypothesised to stabilize the thermolabile spoIVFB product (positive regulation)) TERM 1143 726632 - 726642 + G 79 -3.2 -5.41143 | GCACATGAATTTATG GATC ATT GGTC TTTTTTTGGCGCATG spoIVFB 726078 - 726941 + | Stage IV sporulation protein FB, Zn-dependent protease rplU 727028 - 727387 + | Ribosomal protein L21 TERM 1144 727431 - 727445 + G 70 -7.8 -3.66178 | opp_overlap 727423 727419, overlap 727419 AATCGAACGTCAGAG GGGACG ATT CGTTCC TTTACCATTAGCGGA Aflv_0695 727398 - 727733 + | Predicted ribosomal protein rpmA 727747 - 728037 + | Ribosomal protein L27 TERM 1145 728045 - 728075 + F 100 -14.2 -5.2291 | opp_overlap 728050, overlap 728050 AAGCATAAGGAAGTG GAAAACTCTAACCG ACT TGGTTAGGGTTTTC TTTTTGTTATCGTAT TERM 1146 728050 - 728070 + F 95 -8.3 -5.44638 | opp_overlap 728050, overlap 728045 TAAGGAAGTGGAAAA CTCTAACCG ACT TGGTTAGGG TTTTCTTTTTGTTAT spo0B 728126 - 728671 + | Sporulation initiation phosphotransferase, spo0B obg 728702 - 729988 + | Spo0B-associated GTPase Obg pheB 729972 - 730451 + | ACT domain-containing protein PheB pheA 730466 - 731329 + | Prephenate dehydratase TERM 1147 731316 - 731336 + T 95 -4.7 -5.83226 | opp_overlap 731316 731304 731319 ATACCGTAAAAAAAA CATCCCT CGTGTAA GGGGATG TTTTTTTATTCGATT TERM 1148 731336 - 731316 - T 88 -4 -5.79526 | opp_overlap 731316, overlap 731304 731319 ATACCGTAAAAAAAA CATCCC TCGTGTAAG GGGATG TTTTTTTATTCGATT Aflv_0701 731875 - 731342 - | Predicted trancriptional regulator (HTH fused to 3H domain) Aflv_0702 733044 - 731872 - | Cysteine sulfinate desulfinase/cysteine desulfurase TERM 1149 732234 - 732247 + g 87 -5.2 -5.58209 | TATTCATATGGTGTT GCGC TGTTGT GCGC TTTTTTTCGATTTCA nadB 733101 - 734633 + | L-aspartate oxidase nadC 734570 - 735460 + | Nicotinate-nucleotide pyrophosphorylase TERM 1150 735564 - 735554 - g 82 -6.8 -4.86939 | opp_overlap 735561 735563, overlap 735558 GAAGAAATGGAAAAA CGAG TCG CTCG TGTCAAGCGGGAGCT TERM 1151 735561 - 735588 + G 86 -7.6 -4.67607 | opp_overlap 735554 735558, overlap 735563 TGGAAAAACGAGTCG CTCGTGTCAAGC GGGA GCTCGGCACGCG TTTATTTATTCCAGG nadA 735473 - 736576 + | Quinolinate synthase TERM 1152 736577 - 736598 + F 100 -8 -5.98675 | opp_overlap 736577 736580 TTAGCGCGCGCATAA GATCGGCA TTTTTT TGCCGGTC TTTTTTATTTTTATC TERM 1153 737588 - 737604 + G 81 -5.2 -5.1485 | TGGCAGGGGCAACCG TATGGA ATGAA TCCATA TTTTTCTGTTCCTTA Aflv_0706 736712 - 737644 + | LysM domain containing protein TERM 1154 737627 - 737658 + F 89 -6.7 -5.2197 | gap 1, opp_overlap 737635, overlap 737635 GTTCCTTATCGTGAG GAAGAAGAGG-GGC AATAA GTCGCCTCTTTTTC TTTTTGCTTTTTGTG TERM 1155 737635 - 737652 + F 83 -3.3 -5.67529 | opp_overlap 737635, overlap 737627 TCGTGAGGAAGAAGA GGGGCAA TAAG TCGCCTC TTTTTCTTTTTGCTT TERM 1156 738287 - 738277 - g 75 -8.2 -3.83102 | GAAATTATTACGAAA GCGC CTA GCGC AGGTCTTTGGGAAGG nadE 737719 - 738459 + | NH3-dependent NAD+ synthetase Aflv_0708 738505 - 739233 + | Spore cortex protein CoxA TERM 1157 739256 - 739235 - f 100 -14.5 -3.54459 | opp_overlap 739235, overlap 739238 TGAATCGCGGCTAAA GAACAGGGG CTCC CCCCTGTTC TTTTTCATTTATTTT TERM 1158 739235 - 739256 + F 100 -14.5 -5.1517 | opp_overlap 739235 739238 TGAATCGCGGCTAAA GAACAGGGG CTCC CCCCTGTTC TTTTTCATTTATTTT TERM 1159 739253 - 739238 - f 84 -10.4 -3.90922 | opp_overlap 739235, overlap 739235 ATCGCGGCTAAAGAA CAGGGG CTCC CCCCTG TTCTTTTTCATTTAT Aflv_0709 739318 - 740055 + | hypothetical protein TERM 1160 740056 - 740077 + F 100 -14.5 -4.19735 | opp_overlap 740056 TCTATGTTAGAATAA CGGTCTTGC GGTA GCAAGACCG TTTAATTTTGGAGAA TERM 1161 740077 - 740056 - f 100 -14.5 -3.80733 | opp_overlap 740056 TCTATGTTAGAATAA CGGTCTTGC GGTA GCAAGACCG TTTAATTTTGGAGAA Aflv_0710 740105 - 740569 + | Forespore regulator of the sigma-K checkpoint, BofC TERM 1162 740592 - 740567 - f 86 -10.5 -4.0896 | opp_overlap 740567 740570, overlap 740570 AAACCGTTTGGAAAA TAAGCCCGC GCATGAAA GCGGGCTTA TTGTGCTTCCGCTTT TERM 1163 740567 - 740592 + F 79 -10.5 -3.52941 | opp_overlap 740567 740570, overlap 740570 AAACCGTTTGGAAAA TAAGCCCGC GCATGAAA GCGGGCTTA TTGTGCTTCCGCTTT TERM 1164 740570 - 740589 + F 73 -7.8 -3.8917 | opp_overlap 740567 740570, overlap 740567 CCGTTTGGAAAATAA GCCCGC GCATGAAA GCGGGC TTATTGTGCTTCCGC TERM 1165 740589 - 740570 - f 77 -7.8 -4.17048 | opp_overlap 740570 740567, overlap 740567 CCGTTTGGAAAATAA GCCCGC GCATGAAA GCGGGC TTATTGTGCTTCCGC ruvA 740663 - 741256 + | Holliday junction resolvasome, DNA-binding subunit TERM 1166 742169 - 742188 + G 82 -5.8 -5.00616 | gap 1, opp_overlap 742169 GAAGACGTATATGAA CCGTATTTG TTA CAAAT-CGG TTTTTTACAACGAAC ruvB 741266 - 742273 + | Holliday junction resolvasome, helicase subunit RuvB Aflv_0713 742345 - 743520 + | Transposase TERM 1167 743715 - 743701 - g 85 -7.2 -4.77157 | opp_overlap 743700 CGAACCTACCAAAAA CAATCA TGC TGATTG GTGTCGTTCTTATCA Aflv_0714 743682 - 743888 + | hypothetical protein queA 743907 - 744944 + | S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) TERM 1168 746019 - 746056 + G 71 -3.3 -5.02074 | opp_overlap 746018 746032, overlap 746024 746032 AGCAAGTGCGACAAG CGATTCGCGAAGATCGC CTTG GCGATTTCCGTGAGCAG TTTTTTGAACAATAC tgt 744965 - 746104 + | tRNA-guanine transglycosylase Aflv_0717 746119 - 746382 + | Preprotein translocase subunit YajC TERM 1169 746380 - 746404 + T 93 -9.4 -4.87786 | opp_overlap 746380 GTTGTCAATGAAAAA TAAGACAGGT TTGTT GCCTGTCTTA TTTTTATGCGCTTCG TERM 1170 746404 - 746380 - T 90 -8.7 -4.8622 | opp_overlap 746380 GTTGTCAATGAAAAA TAAGACAGG TTTGTTG CCTGTCTTA TTTTTATGCGCTTCG Aflv_0718 746803 - 746408 - | hypothetical protein TERM 1171 747372 - 747337 - g 85 -4.1 -5.47846 | opp_overlap 747337 AAGGAAAAAAGAAAA CACCGTCTTTAGT GTTGCCGCTT ATTAAAGACGGCG TCATTCAAGAAGAAC Aflv_0719 746868 - 747521 + | hypothetical protein spoVB 749045 - 747522 - | Spore cortex synthesis memebrane protein, SpoVB TERM 1172 749208 - 749191 - gH 73 -5.6 -4.4773 | GTAGATGAACTAAAA TTGCTC GGTTAT GAGCAA GCGACGATTGAGGAT Aflv_0721 749038 - 749409 + | hypothetical protein TERM 1173 749489 - 749472 - fH 91 -9.9 -4.56597 | TTTTGTTGGTAAAAA TTCTGGC ACAT GCCAGAA TAGAGGAGGATTTTT TERM 1174 751312 - 751322 + G 79 -3.2 -5.31275 | CTATTGTTGCGCTAT TGCA TGA TGCG TTTTTTATCATCGCC Aflv_0722 749505 - 751751 + | Preprotein translocase subunits SecDF TERM 1175 751773 - 751752 - f 88 -11.5 -3.58854 | opp_overlap 751752, overlap 751746 751740 GAACCAGAAGTATAA CGTCGTGGC GCAT GCCGCGACG TTTTTTCGTGGCGTG TERM 1176 751752 - 751773 + F 100 -13.7 -5.15634 | opp_overlap 751752 751746 751740 GAACCAGAAGTATAA CGTCGTGGC GCAT GCCGCGACG TTTTTTCGTGGCGTG TERM 1177 752285 - 752305 + G 84 -3.9 -5.5074 | overlap 752283 752285 CGATTATCGTTAATG CGTACGAGC ATC GTTCGGATG TTTTTTCTTCGATTG TERM 1178 752559 - 752576 + G 72 -7.7 -3.87364 | overlap 752566 CATTGACTCACTTTA TGCCCGT CAAC ATGGGCA TTATGTTGTTGTCGA Aflv_0723 751834 - 752727 + | Predicted Co/Zn/Cd cation transporter TERM 1179 753998 - 754038 + GF 74 -5.3 -4.73614 | overlap 754000 TTGTCGCGATATTTT GCCGCATTTTGGCGGACAT CCG ATGGCGGCCGGAATGACGC TTTCTTTTCATGATG Aflv_0724 752772 - 755141 + | Single-stranded DNA-specific exonuclease RecJ apt 755089 - 755619 + | Adenine/guanine phosphoribosyltransferase TERM 1180 755625 - 755643 + F 82 -8.1 -4.64598 | opp_overlap 755625 755624 755627 GCAATTTTAATGAAG GAGGGGC AAAAC GCTCCTC TTTTTCGCATCGTTG TERM 1181 756117 - 756092 - g 71 -4.7 -4.6265 | overlap 756093 ACAACAAGCAGAAAA TCATCGCAAAA TGTT TTTAGCGATGG CGCAAGATATACGAG relA 755724 - 757922 + | GTP pyrophosphokinase (ppGpp synthetase) Aflv_0727 757937 - 758377 + | D-Tyr-tRNAtyr deacylase TERM 1182 758381 - 758406 + T 100 -7.5 -5.58179 | opp_overlap 758381 758371 GAAAGCAAATAAAAA CCGTGCTCG CATATGGA CGAGCCCGG TTTTTTCTTATCCTC TERM 1183 758406 - 758381 - T 93 -8.2 -5.41941 | opp_overlap 758381, overlap 758371 GAAAGCAAATAAAAA CCGTGCTCGC ATATGG ACGAGCCCGG TTTTTTCTTATCCTC Aflv_0728 758593 - 758414 - | hypothetical protein TERM 1184 758655 - 758669 + H 75 -2.8 -5.22481 | AATTTTTCTACCTTT TCATTC AAA GAAGGA TTTTGTTTGTTTGTG TERM 1185 759035 - 759019 - g 100 -8.1 -5.29208 | AAAAGAAAAAACAAA TACAACA ACT TGTTGTA TGCCAAGCAGACGGA Aflv_0729 758805 - 760001 + | N-acetylmuramoyl-L-alanine amidase TERM 1186 760270 - 760301 + F 100 -12.4 -5.30616 | CACCACGGGAACTCG TCTCTCGTCCCTAA TTTA TTAGGGGTGGGAGA TTTTTATTTGCATAA hisS 760337 - 761608 + | Histidyl-tRNA synthetase TERM 1187 762833 - 762820 - g 77 -3.8 -5.24129 | opp_overlap 762809 762830 GTCGCTGATAAAAAA TCGG TTGTTG CCGA TGCGCTTGGTGCATT aspS 761620 - 763398 + | Aspartyl-tRNA synthetase TERM 1188 763701 - 763652 - f 91 -8 -5.33405 | opp_overlap 763660, overlap 763660 CTTAGGAAACAAAAA CGAATAAAGCCTTGACGTAAAG AACATG CTTTACGTTGAGGCTTTTTTTG TGCCATAATGCATGT TERM 1189 763693 - 763660 - f 82 -8.2 -4.52042 | opp_overlap 763660, overlap 763652 ACAAAAACGAATAAA GCCTTGACGTAAAG AACATG CTTTACGTTGAGGC TTTTTTTGTGCCATA TERM 1190 763660 - 763693 + F 100 -12.6 -5.626 | opp_overlap 763660 763652 ACAAAAACGAATAAA GCCTTGACGTAAAG AACATG CTTTACGTTGAGGC TTTTTTTGTGCCATA Aflv_0732 763709 - 764518 + | Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis TERM 1191 764519 - 764541 + F 100 -14.2 -5.00884 | opp_overlap 764516 764519 GTCGATCAACAATGA GCGCAAAGGG AAC TCCTTTGCGC TTTTTTACAGCACAT TERM 1192 764541 - 764519 - f 93 -13.5 -2.96249 | opp_overlap 764519, overlap 764516 GTCGATCAACAATGA GCGCAAAGG GAACT CCTTTGCGC TTTTTTACAGCACAT TERM 1193 765164 - 765152 - g 84 -3.5 -5.45726 | CAGAGTTGAAAAAAA TTAAT GGC ATTAA CTCCATTTCTGTCGG TERM 1194 767483 - 767471 - g 72 -7.7 -3.84901 | GTGAGCAAAAAGGAA TGACG ATT CGTCA AGCGCTTATTGAAGC Aflv_0733 764662 - 767721 + | Cation/multidrug efflux pump TERM 1195 767729 - 767755 + F 100 -15.2 -3.77808 | opp_overlap 767731 AAGCATAATTGGAGA CAGGCTGGCTGA AAT TCGGTCAGCCTG TTGTGTTATAATAAA TERM 1196 768517 - 768506 - g 72 -7.2 -4.00788 | AAAACAGAAATACAA CGGG ATGA CCCG AGAAAAGCGATTGTT Aflv_0734 767801 - 768610 + | Transcriptional regulator, TetR/AcrR family Aflv_0735 768623 - 769903 + | ATPase Aflv_0736 769941 - 770393 + | Putative transcriptional regulator YrzC TERM 1197 770822 - 770812 - g 100 -8.2 -4.74706 | TTGAACAGCTAAAAA GCGC TTT GCGC GACGATACGGTTCTT TERM 1198 771283 - 771305 + G 76 -7 -4.56775 | opp_overlap 771274, overlap 771284 ATGAAACAAATCGTT TGCCACATGT ATT AAATGTGGCG TTTTTCGGAACAAAT Aflv_0737 770403 - 771554 + | Cysteine desulfurase family aminotransferase trmU 771551 - 772666 + | tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase TERM 1199 772666 - 772694 + F 100 -7.5 -5.58179 | overlap 772667 GACATATGTTGGCTA ACCTTCAACTC AACAGAC GAGTTGAAGGC TTTTTTGTTATAATA TERM 1200 772667 - 772693 + F 86 -11 -3.9328 | overlap 772666 ACATATGTTGGCTAA CCTTCAACTC AACAGAC GAGTTGAAGG CTTTTTTGTTATAAT TERM 1201 772899 - 772879 - g 100 -12.7 -3.61398 | GCTGTCGGTGAAGAA GAAAAAGCG ATT CGCTTTTTC CATAAAGCACTTGAA TERM 1202 772937 - 772927 - g 74 -4.6 -4.74801 | opp_overlap 772927 GAACTTGATGAAAAA GCAG CGA CCGC TTATTACGGACTCGG TERM 1203 773155 - 773124 - g 74 -8 -4.02108 | gap 1, opp_overlap 773133 GGCAGTAGAATTAAA CGAGC-GCGATGTCG AAG CGACATTTCAGCTCG GGCTTTGTTTCGCAC TERM 1204 773133 - 773145 + G 70 -7.7 -3.60475 | opp_overlap 773124 ATTAAACGAGCGCGA TGTCG AAG CGACA TTTCAGCTCGGGCTT Aflv_0739 772720 - 773385 + | TPR -repeat containing protein Aflv_0740 773397 - 775751 + | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member Aflv_0741 775810 - 776043 + | Zn-ribbon containing protein Aflv_0742 776054 - 776194 + | hypothetical protein TERM 1205 776190 - 776241 + F 95 -13.5 -3.38484 | gap 2, opp_overlap 776203, overlap 776203 TGTTGCGCCCATTTA TG-TA-ACGAAAAAACGGCAATCTC ATTT GAGGTTGCCGTTTTTTTGTATAACA TTCCCTTTGTATTCT TERM 1206 776226 - 776203 - f 100 -11 -5.28481 | opp_overlap 776190 776203 TATGTAACGAAAAAA CGGCAATCTC ATTT GAGGTTGCCG TTTTTTTGTATAACA TERM 1207 776203 - 776226 + F 100 -13.2 -5.71712 | opp_overlap 776203, overlap 776190 TATGTAACGAAAAAA CGGCAATCTC ATTT GAGGTTGCCG TTTTTTTGTATAACA TERM 1208 776370 - 776383 + G 74 -4.5 -4.75356 | TTGTAAAGCTTAAGT CGGTA TGGT TGCCG TTTTTACATGTATTT Aflv_0743 776276 - 777340 + | Predicted permease TERM 1209 777404 - 777392 - f 72 -3.4 -5.09685 | TAATACATACAAAAA CGAT GACGG ATCG AGTATGTTACAGCCC TERM 1210 777593 - 777618 + F 100 -11.9 -5.69068 | opp_overlap 777592 GGTACCGCGAGCAAG CTCTCGTCCCT GAGC AGGGATGGGAG TTTTTTATATTTTTA TERM 1211 777747 - 777759 + G 72 -7.7 -3.85209 | ATCGCTTATTCCAAT TGACG ACC CGTCA TTGTTATGGATTAAT TERM 1212 779398 - 779416 + G 81 -9.6 -3.75024 | GTACTTGGTGTGCAT GTGAACCA AGC TGGTTCGC TTGTTGCTCCTGACC alaS 777649 - 780282 + | Alanyl-tRNA synthetase TERM 1213 780481 - 780471 - g 82 -6.8 -4.82667 | GCATTACAGGAAAAA GGGT ATA ACCC GATTAACCAAATTGT Aflv_0745 780342 - 780632 + | hypothetical protein Aflv_0746 780622 - 781059 + | RNase H-like ribonuclease Aflv_0747 781056 - 781352 + | hypothetical protein TERM 1214 781375 - 781353 - f 75 -7.7 -4.1157 | opp_overlap 781353, overlap 781356 GAGGAAGAAGAATAA GAGGCTGAC TGCGC GTCAGCTTC TTTTTTATTTATGTC TERM 1215 781353 - 781375 + F 100 -9.9 -5.76237 | opp_overlap 781353 781356 GAGGAAGAAGAATAA GAGGCTGAC TGCGC GTCAGCTTC TTTTTTATTTATGTC TERM 1216 782051 - 782038 - g 75 -3.1 -5.24796 | overlap 782039 TTTACAGAAGAAAAA CCTTC GCTT GAAGA AATGATTGAAACCAT Aflv_0748 781438 - 782520 + | Aminodeoxychorismate lyase TERM 1217 782607 - 782581 - f 90 -12.5 -3.73775 | opp_overlap 782581, overlap 782584 TGGATCGTGATGAAA CAAGAGTTCAA TTCGT TTGAACTCTTG TTTTTGCGAGGAGGA TERM 1218 782581 - 782607 + F 100 -12.5 -4.56597 | opp_overlap 782581 782584 TGGATCGTGATGAAA CAAGAGTTCAA TTCGT TTGAACTCTTG TTTTTGCGAGGAGGA TERM 1219 782604 - 782584 - f 79 -8.4 -4.0031 | opp_overlap 782581, overlap 782581 ATCGTGATGAAACAA GAGTTCAA TTCGT TTGAACTC TTGTTTTTGCGAGGA TERM 1220 783023 - 783046 + GF 73 -2.3 -5.1925 | GTATTGTTTATTGAC GCGGCAAAA GGACAA TATCGCCGC TTTTTTGAGTTGTAC Aflv_0749 782597 - 783277 + | O-methyltransferase family enzyme TERM 1221 783699 - 783676 - gf 70 -9 -3.15027 | gap 1, opp_overlap 783675, overlap 783675 ATTGGGGACGAAAAG GAGCAA-AACG TGC CGTTCTTGCTC GTGAGTTGAATATGG TERM 1222 784165 - 784181 + GF 80 -3.6 -5.27335 | TTCAGCCGACACATC GCCCGT TAGAC ACCGGC TTTTTCTTTAAAGAA Aflv_0750 783216 - 784208 + | Collagenase family protease TERM 1223 785240 - 785223 - g 91 -5.5 -5.58454 | opp_overlap 785227, overlap 785227 TTCATAGCAAAAAAA CGACGTA CGAT TTCGTCG GACTTGTGCTTGACT Aflv_0751 784229 - 785482 + | Collagenase family protease udk 785484 - 786119 + | Uridine kinase TERM 1224 786157 - 786179 + F 90 -10.7 -4.19817 | AAACTTTTTGTCTTT TGTACGAAC TGCTC GTTCGTACA TTTTCCATACATAAA greA 786204 - 786689 + | Transcription elongation factor GreA TERM 1225 786730 - 786704 - f 76 -10.8 -2.63623 | opp_overlap 786704, overlap 786703 786701 786699 786706 GGTTTTAAAATACAT CACCTCGTCGAC AAT GAAGACGAGGTG TTTTTTATGGTAAAA TERM 1226 786704 - 786730 + F 100 -10.8 -5.31275 | opp_overlap 786704 786703 786701 786699 786706 GGTTTTAAAATACAT CACCTCGTCGAC AAT GAAGACGAGGTG TTTTTTATGGTAAAA TERM 1227 787312 - 787324 + G 74 -4.9 -4.90266 | opp_overlap 787312 GTCTGGCTTACAAAG TTCAT TTG ATGAA TTTTTAATTCCTGAC Aflv_0754 786728 - 788485 + | Cell division protein FtsI/penicillin-binding protein 2 TERM 1228 788631 - 788621 - g 75 -5.4 -4.7878 | overlap 788617 GACCGACAAAAGAAA CGAA TGC TTCG CCACAACCGGTTGAA Aflv_0755 788482 - 789078 + | hypothetical protein TERM 1229 789085 - 789062 - f 89 -8.9 -4.81843 | opp_overlap 789062 789054 AACAATTAAAAGAAA TAGAGCGCC GTCCGT GACGCTCTA TTTTTTTGCTTTAAA TERM 1230 789062 - 789085 + F 100 -7.4 -5.72207 | opp_overlap 789062, overlap 789054 AACAATTAAAAGAAA TAGAGCGCCG TCCG TGACGCTCTA TTTTTTTGCTTTAAA TERM 1231 790022 - 790012 - g 71 -3.2 -4.94058 | GCAAGCTAAAGAAAA TCGC CGG GCAA GAAAACCGTTTCATG Aflv_0756 789228 - 790430 + | Transposase Aflv_0757 790756 - 790538 - | hypothetical protein Aflv_0758 790794 - 791447 + | SAM-dependent methyltransferase mtn 791466 - 792164 + | Methylthioadenosine nucleosidase TERM 1232 792162 - 792184 + F 87 -8.4 -4.55826 | opp_overlap 792162 792164 792165, overlap 792165 AATGAATTAAATAAA TAGGGAGAGG CAT CCTCTCCTTC TTTTCATCTTTTGGG TERM 1233 792184 - 792162 - f 77 -6.2 -4.59212 | opp_overlap 792162 792165, overlap 792164 792165 AATGAATTAAATAAA TAGGGAGAGG CAT CCTCTCCTTC TTTTCATCTTTTGGG TERM 1234 792182 - 792164 - f 77 -8.8 -3.88884 | opp_overlap 792162 792165, overlap 792162 792165 TGAATTAAATAAATA GGGAGAGG CAT CCTCTCCT TCTTTTCATCTTTTG TERM 1235 792181 - 792165 - f 84 -12.3 -2.92246 | opp_overlap 792162 792165, overlap 792164 792162 GAATTAAATAAATAG GGAGAGG CAT CCTCTCC TTCTTTTCATCTTTT TERM 1236 792165 - 792181 + F 100 -12.3 -4.36348 | opp_overlap 792165 792164 792162, overlap 792162 GAATTAAATAAATAG GGAGAGG CAT CCTCTCC TTCTTTTCATCTTTT Aflv_0760 792195 - 793133 + | Cysteine synthase TERM 1237 794014 - 793999 - g 73 -2.6 -5.09895 | gap 1, overlap 794005 GACGTAGCGAAAAAA CAAATGC GCG GC-TTTG GCGGCATGGTGTCAT Aflv_0761 793135 - 794268 + | Cystathionine gamma-synthase(O-succinylhomoserine (thiol)-lyase) Aflv_0762 794304 - 794561 + | hypothetical protein TERM 1238 794731 - 794711 - T 81 -7.5 -4.5442 | opp_overlap 794711, overlap 794706 CGCTGAAGCATAAAA CAGTCTCCA AAT CGGAGGCTG TTTTTATACAACAAC TERM 1239 794711 - 794731 + T 89 -9 -4.82901 | opp_overlap 794711 794706 CGCTGAAGCATAAAA CAGTCTCC AAATC GGAGGCTG TTTTTATACAACAAC TERM 1240 795068 - 795041 - T 100 -11.4 -5.58074 | gap 1, opp_overlap 795041 TAAGGATTAAAAAAA GCTGTTCCG-AGC AAC ACTTCGGAACAGC TTTTTTGTTGTTATG TERM 1241 795041 - 795068 + T 100 -12.1 -5.68489 | opp_overlap 795041 TAAGGATTAAAAAAA GCTGTTCCGAG CAACAC TTCGGAACAGC TTTTTTGTTGTTATG Aflv_0763 795702 - 795079 - | Micrococcal nuclease (thermonuclease) family enzyme Aflv_0764 796001 - 796678 + | CRISPR system related protein, RAMP superfamily TERM 1242 797156 - 797146 - g 71 -4 -4.90917 | opp_overlap 797146, overlap 797134 AAAGTCAACGAAAAA TTGA CGC TCAA TTACTTTAAACCAGC Aflv_0765 796675 - 798450 + | CRISPR system related protein TERM 1243 799024 - 799010 - g 70 -7.8 -3.66666 | opp_overlap 799021 TTTAAAAGTGCTAAA CCGCAA CAT TCGCGG ACGACAAGAAAATTT TERM 1244 799021 - 799047 + G 73 -3.7 -4.9218 | gap 1, opp_overlap 799010 TAAACCGCAACATTC GCGGACGACAAG AAAA TTTGGC-TCCGC TTTTTGTCATCGGTG Aflv_0766 798447 - 799334 + | CRISPR system related protein Aflv_0767 799337 - 800038 + | CRISPR system related protein, RAMP superfamily TERM 1245 800079 - 800110 + G 91 -10.2 -4.15328 | opp_overlap 800080, overlap 800080 800082 AAAATCTGAGGGAAA AGAGACGATTCGTG AACA TACGGATCGTCTCC TTTATAATTTAAATT TERM 1246 800080 - 800109 + G 100 -13.7 -3.08112 | opp_overlap 800080, overlap 800079 800082 AAATCTGAGGGAAAA GAGACGATTCGTG AACA TACGGATCGTCTC CTTTATAATTTAAAT TERM 1247 800109 - 800080 - g 93 -10.8 -4.20106 | opp_overlap 800079 800080 800082 AAATCTGAGGGAAAA GAGACGATTCGT GAACAT ACGGATCGTCTC CTTTATAATTTAAAT TERM 1248 800082 - 800107 + G 77 -10.5 -3.09007 | opp_overlap 800080, overlap 800080 800079 ATCTGAGGGAAAAGA GACGATTCGTG AACA TACGGATCGTC TCCTTTATAATTTAA TERM 1249 800470 - 800460 - g 87 -4.6 -5.43487 | AAACGATATAAAAAA GCAG TTA CCGC AACTAAGTGAACACA Aflv_0768 800047 - 802227 + | CRISPR-associated protein Cas3 Aflv_0769 802242 - 802739 + | CRISPR-associated protein Cas4 (RecB family exonuclease) TERM 1250 803241 - 803253 + G 76 -2.7 -5.26119 | AGTCATTTAATGCGA TTTTG AAG CAAGA TTTTATTTTTGAAAA Aflv_0770 802739 - 803722 + | CRISPR-associated protein Cas1 Aflv_0771 803724 - 803987 + | CRISPR-associated protein Cas2 TERM 1251 804102 - 804159 + F 78 -7.4 -4.4267 | gap 2, opp_overlap 804108 804110 804111, overlap 804108 804108 804109 ACTTTACTGCAAAAC GCAGAA-G-ATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAGCACTTTTTGC TTTTGGATTTTAGGG TERM 1252 804108 - 804152 + F 86 -7.4 -5.10154 | gap 1, opp_overlap 804108 804110 804111, overlap 804102 804108 804109 CTGCAAAACGCAGAA G-ATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAGCAC TTTTTGCTTTTGGAT TERM 1253 804150 - 804108 - f 72 -8.7 -3.52113 | gap 1, opp_overlap 804102 804108 804108 804109, overlap 804110 804111 CTGCAAAACGCAGAA GATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAG-C ACTTTTTGCTTTTGG TERM 1254 804109 - 804150 + F 77 -11.1 -2.77595 | opp_overlap 804108 804110 804111, overlap 804108 804108 804102 TGCAAAACGCAGAAG ATTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAGC ACTTTTTGCTTTTGG TERM 1255 804149 - 804110 - f 87 -12.4 -3.32984 | opp_overlap 804109 804108 804108 804102, overlap 804108 804111 GCAAAACGCAGAAGA TTGTCATATCAACGCTTT CCAA AAATCGTTGATATGACAG CACTTTTTGCTTTTG TERM 1256 804148 - 804111 - f 100 -15.9 -2.59068 | opp_overlap 804109 804108 804108 804102, overlap 804110 804108 CAAAACGCAGAAGAT TGTCATATCAACGCTTT CCAA AAATCGTTGATATGACA GCACTTTTTGCTTTT TERM 1257 805176 - 805156 - f 70 -5.5 -4.34345 | GATACATCATCAAAA CTACGTT TTATCTG AACGTAG TGGGATGTAAAGCGC TERM 1258 805591 - 805618 + F 79 -7 -4.53303 | opp_overlap 805597, overlap 805592 805593 GTAAAGGACGTTCCG AATGAAGAAGCC GAAT GGCTTCTTCAAG TTTTATCTGAACGTA TERM 1259 805592 - 805617 + F 77 -10.5 -3.315 | opp_overlap 805597, overlap 805591 805593 TAAAGGACGTTCCGA ATGAAGAAGCC GAAT GGCTTCTTCAA GTTTTATCTGAACGT TERM 1260 805593 - 805616 + F 91 -14 -2.58418 | opp_overlap 805597, overlap 805592 805591 AAAGGACGTTCCGAA TGAAGAAGCC GAAT GGCTTCTTCA AGTTTTATCTGAACG TERM 1261 805612 - 805597 - f 72 -9 -3.34013 | opp_overlap 805593 805592 805591 GACGTTCCGAATGAA GAAGCC GAAT GGCTTC TTCAAGTTTTATCTG TERM 1262 805802 - 805818 + F 71 -5.1 -4.53303 | overlap 805805 AGCAATGTTGCTTCT CAATCAC TTG GTGATAG TTTTATCTGAACGTA TERM 1263 805876 - 805865 - f 73 -7.2 -4.13571 | opp_overlap 805865 805869 TGAAATAAAACAGAA GGCG CTGG CGCC GCGACAGTTTTATCT TERM 1264 805869 - 805883 + F 73 -5.6 -4.53303 | opp_overlap 805865, overlap 805865 ATAAAACAGAAGGCG CTGGCG CCG CGACAG TTTTATCTGAACGTA TERM 1265 807595 - 807572 - f 77 -10.4 -3.39936 | overlap 807565 807576 ATGTAAAGTTCAGAA TGAAGAAGCC TTAT AGCTTCTTCA ACAAGTTTTATCTGA Aflv_0772 809989 - 810552 + | Transposon related protein, Zn-finger domain TERM 1266 812325 - 812344 + G 81 -7.2 -4.59109 | opp_overlap 812325 812326 812329, overlap 812326 TTCTGCTAGATGAAA TGCATCTT GCGA AAGATGCG TTTTTGCAAGATATC TERM 1267 812389 - 812404 + G 70 -7.6 -3.66908 | overlap 812383 812382 TTTTCACATGGACTC CACGAA TCCG TTCGTG TTGATTTTGGCAGGA Aflv_0773 811934 - 812734 + | Type II secretory pathway, component ExeA (predicted ATPase) TERM 1268 812735 - 812760 + F 86 -7.5 -5.04325 | opp_overlap 812740, overlap 812740 GAAACCGGGGCATAA GGAAAGGGGCC GAAC GGCTCCTCTTC TTTTTCTGATTTCCG TERM 1269 812740 - 812755 + F 73 -8.2 -3.8772 | opp_overlap 812740, overlap 812735 CGGGGCATAAGGAAA GGGGCC GAAC GGCTCC TCTTCTTTTTCTGAT TERM 1270 812816 - 812854 + F 71 -6 -4.2558 | opp_overlap 812826 AAAAAGCGTGCAAAA TCGGAGGGAATTCGCAAA CAT TTTGCGCAGTATTTCCGA TTTTCATCCAAAATA TERM 1271 813097 - 813112 + F 73 -5.4 -4.53303 | gap 1, opp_overlap 813095 ATTTGCATGAATAGC CGCATCG AGG CG-TGCG TTTTATCTGAACGTA TERM 1272 813738 - 813754 + F 78 -3.7 -5.24989 | overlap 813740 813749 GTGGGATGTAAAGTT TTTTCGT CTG ACGAATA TTTTTTCGTATATAC TERM 1273 813740 - 813752 + F 71 -6.3 -4.24891 | overlap 813738 813749 GGGATGTAAAGTTTT TTCGT CTG ACGAA TATTTTTTCGTATAT TERM 1274 815085 - 815095 + F 73 -5.4 -4.53303 | ACATTATCAACCTGC CTTG TAT CAAG TTTTATCTGAACGTA TERM 1275 815599 - 815623 + F 91 -10 -4.53303 | opp_overlap 815594 AATAAAAAACGCCAC CACGTCGCAC ACATC GTGCGAGGTG TTTTATCTGAACGTA TERM 1276 816202 - 816217 + F 71 -4.8 -4.53303 | GAAAGTTTTTTGGTT CTTTTT TTCA AAAAAG TTTTATCTGAACGTA TERM 1277 816269 - 816283 + F 77 -6.4 -4.53303 | TCAAAGGGTTTCGGT CGACGT GGC ATGTCG TTTTATCTGAACGTA TERM 1278 817187 - 817209 + G 73 -5.6 -4.45175 | overlap 817188 817189 AAAAAATATTTGATC GTTCGTTTTC GGG GAAAACGAGA TTTAGTTTTTTGCTA TERM 1279 817188 - 817208 + G 71 -9.1 -3.25478 | overlap 817187 817189 AAAAATATTTGATCG TTCGTTTTC GGG GAAAACGAG ATTTAGTTTTTTGCT TERM 1280 817189 - 817207 + G 73 -10.4 -2.5366 | overlap 817188 817187 AAAATATTTGATCGT TCGTTTTC GGG GAAAACGA GATTTAGTTTTTTGC Aflv_0774 816991 - 817752 + | hypothetical protein TERM 1281 817751 - 817788 + T 100 -15.8 -3.73008 | opp_overlap 817756, overlap 817756 GACAAGTTCGTGTAT GAAAACAGGTGTCCTG GGTTGG CAGGACACCTGTTTTG TTATGATTTTATCAT TERM 1282 817783 - 817756 - T 100 -15.7 -4.25104 | opp_overlap 817751 817756 GTTCGTGTATGAAAA CAGGTGTCCTG GGTTGG CAGGACACCTG TTTTGTTATGATTTT TERM 1283 817756 - 817783 + T 100 -15.7 -4.88258 | opp_overlap 817756, overlap 817751 GTTCGTGTATGAAAA CAGGTGTCCTG GGTTGG CAGGACACCTG TTTTGTTATGATTTT Aflv_0776 818709 - 818212 - | Predicted metal-dependent protease, XkdA family Aflv_0777 819567 - 818809 - | Membrane-associated endonuclease, HJR/Mrr/RecB family TERM 1284 818848 - 818867 + g 80 -3.6 -5.27335 | TCGTTTTGCTGCTTC TCGTTCTT TCCA AGGAATGA TTTTTGTTTCAACAA xre 819916 - 819569 - | Predicted transcriptional regulator, xre family TERM 1285 819682 - 819668 - G 70 -2.9 -5.0538 | opp_overlap 819668 CTCCATGTCAAAAAA GAAAA GGTTT TTTTC ATTGTCTGTTTTATC TERM 1286 819967 - 819952 - H 81 -2.6 -5.626 | opp_overlap 819956, overlap 819955 819956 TAGGTGACAAAAAAA CATTTT ACAC AAAACG TGTAATTTTATATTG TERM 1287 819956 - 819972 + H 74 -5.2 -4.6821 | opp_overlap 819952 819956 819955 819967, overlap 819967 TGACAAAAAAACATT TTACAC AAAAC GTGTAA TTTTATATTGACATT Aflv_0779 820054 - 820278 + | Predicted transcriptional regulator, xre family Aflv_0780 820290 - 820529 + | hypothetical protein Aflv_0781 820551 - 820808 + | hypothetical protein Aflv_0782 820819 - 820953 + | hypothetical protein TERM 1288 820984 - 820959 - f 100 -10.5 -5.61596 | overlap 820967 AGCGTCATAAAAAAA GCAGCAAGTGC GGCA ACACTTACTGC AAGGCACAGAAAAAA Aflv_0783 821086 - 821313 + | hypothetical protein TERM 1289 822963 - 822980 + G 71 -3.3 -5.00616 | opp_overlap 822949, overlap 822959 822964 ACAGCTTACAGGCGG TGAGCCG ATCA CAGCTCG TTTTTTGAGAAAGGA TERM 1290 823550 - 823537 - g 72 -8.1 -3.76492 | opp_overlap 823533 823537 TCGAATTCGAGTAAA TCGCC TATA GGCGA TACATTTACGGAAAT Aflv_0784 821323 - 823620 + | Phage associated DNA primase TERM 1291 823681 - 823658 - f 79 -9.8 -3.65351 | opp_overlap 823650 823652 TCATTTCTAGGTAAA TCCTATATAT AGCG ATATATAGGA AAATACCCTGTTTTA TERM 1292 823739 - 823750 + G 79 -3 -5.26316 | overlap 823720 823734 TAAGGAGGCTTTATA TGTT ATAT AACA TTTTTTATGAAATAG Aflv_0785 823738 - 824160 + | hypothetical protein Aflv_0786 824335 - 824514 + | hypothetical protein TERM 1293 824684 - 824711 + G 72 -7.1 -3.92075 | opp_overlap 824686 GGTTTTTCGGTTGAA GAGGACAAG CAACCTATCA CTTGTCCTC TTTGTGAATCGAAAT Aflv_0787 824630 - 824965 + | Predicted protein, contains Zn-ribbon domain Aflv_0788 825119 - 825412 + | hypothetical protein TERM 1294 825506 - 825529 + F 85 -7.5 -4.93898 | opp_overlap 825506 TTTGACCATCTAAAA TCGAGTGAG CCAAAA TTCACTCGA TTTTTGTCATAATAT TERM 1295 825529 - 825506 - f 73 -6.8 -4.21194 | opp_overlap 825506 TTTGACCATCTAAAA TCGAGTGA GCCAAAAT TCACTCGA TTTTTGTCATAATAT TERM 1296 825531 - 825551 + F 93 -5.5 -5.56568 | opp_overlap 825542, overlap 825547 CAAAATTCACTCGAT TTTTGTCAT AAT ATGACCAAA TTTTTTTGGTGATAT Aflv_0789 825599 - 825826 + | hypothetical protein Aflv_0790 825959 - 826105 + | hypothetical protein Aflv_0791 826108 - 826266 + | hypothetical protein Aflv_0792 826543 - 826734 + | hypothetical protein TERM 1297 826743 - 826758 + F 90 -9 -5.14563 | opp_overlap 826738 826743, overlap 826755 GCGATAAGAGGAAAA GGAGGA GCGA TCCTCC TTTTTTCATAGAAAG TERM 1298 826758 - 826743 - f 86 -9 -4.46656 | opp_overlap 826743 826755, overlap 826738 GCGATAAGAGGAAAA GGAGGA GCGA TCCTCC TTTTTTCATAGAAAG TERM 1299 827889 - 827871 - g 84 -5.2 -5.38321 | AAATACTACAAAAAA CACCCTGA TGA TCCGGATG GGAGTGGGGAAGGAT Aflv_0793 826791 - 827906 + | hypothetical protein Aflv_0794 827903 - 829129 + | Uncharacterized conserved protein, containing bacterial Ig-like protein TERM 1300 829492 - 829502 + G 71 -3.2 -5.04265 | AAATTGGCGTGCTGG CGGT GAA ACTG TTTTTGCTCTTTTTT Aflv_0795 829272 - 829757 + | hypothetical protein Aflv_0796 829757 - 830038 + | hypothetical protein TERM 1301 830285 - 830257 - g 78 -5.9 -4.82661 | opp_overlap 830282, overlap 830282 ACGAACAAAAAACAA GCGACATTCAACG CAT CGATGAAATTCGC GACAATGCGATATAT Aflv_0797 830169 - 830570 + | hypothetical protein Aflv_0798 830552 - 830725 + | hypothetical protein Aflv_0799 830732 - 831085 + | hypothetical protein Aflv_0800 831085 - 831741 + | Uncharacterized ATPase Aflv_0801 831710 - 832057 + | hypothetical protein TERM 1302 832127 - 832116 - g 100 -7.2 -6.11392 | opp_overlap 832115 AAAGAAATAAAAAAA GCGC TAAA GCGC AATTATGGATTTTTT TERM 1303 832248 - 832262 + G 74 -4.2 -4.93296 | overlap 832249 GATGACGATGAATTG GGCATG TTA CATGCG TTTTTGTCATCATAC Aflv_0802 832044 - 832400 + | hypothetical protein TERM 1304 832552 - 832579 + F 100 -9.3 -5.75822 | opp_overlap 832552 ATCATCGATTAGGAA CAGATAGCATG CTTGTA CATGTTATCTG TTTTTTTCATTTGTA TERM 1305 834051 - 834025 - g 79 -6.6 -4.67904 | overlap 834027 834048 CAGCAACGTGAAAAA GAGCTGATTGAA CAA TACAATCAGCTG GAACAACAACTAAAA TERM 1306 834049 - 834027 - g 83 -9.2 -3.94933 | overlap 834025 834048 GCAACGTGAAAAAGA GCTGATTGAA CAA TACAATCAGC TGGAACAACAACTAA spoIVCA 832738 - 834234 + | Site-specific recombinase SpoIVCA TERM 1307 834234 - 834252 + T 90 -8.9 -4.89729 | opp_overlap 834237 AATTCACTTATTTTA GAACGCT TAAAC AGCGTTC TTTTTACATTTTATA spoIVCB 834629 - 834240 - | RNA polymerase sporulation-specific sigma factor (sigma-K), SpoIVCB TERM 1308 834401 - 834415 + g 73 -8.5 -3.68674 | overlap 834399 TTGAAATTAAATCTT CCGGG TCCTC CCCGG TGTTTTCAAACTTTT TERM 1309 835493 - 835511 + G 86 -6 -5.27335 | overlap 835495 835496 GCTTGTTGTGAATGT TGTGGCAA TTG TTGCCGTA TTTTTCTTTGAACAA TERM 1310 835495 - 835509 + G 72 -6.4 -4.27026 | overlap 835493 835496 TTGTTGTGAATGTTG TGGCAA TTG TTGCCG TATTTTTCTTTGAAC TERM 1311 836091 - 836075 - g 75 -3 -5.21683 | opp_overlap 836078 ACCGAAAAAAACAAA CATTCG TTATC CAAATG GCGATATATTGACAG Aflv_0805 834783 - 836111 + | Trk-type K+ transport system, membrane component TERM 1312 836112 - 836140 + T 100 -16.1 -3.52079 | opp_overlap 836117, overlap 836117 ATATTGACAGGATGA AAAAAGCGAGGGG CTG CCCCTCGCTTTTA TTGTGTCGGCTCTTG TERM 1313 836117 - 836135 + T 100 -16 -4.84311 | opp_overlap 836117, overlap 836112 GACAGGATGAAAAAA GCGAGGGG CTG CCCCTCGC TTTTATTGTGTCGGC TERM 1314 836135 - 836117 - T 100 -16 -5.20216 | opp_overlap 836117 836112 GACAGGATGAAAAAA GCGAGGGG CTG CCCCTCGC TTTTATTGTGTCGGC motB 836893 - 836138 - | Flagellar motor protein B TERM 1315 836848 - 836872 + g 87 -5 -5.47914 | GAATGAGCCAGCTTT CATCGACATG TTCTT CATGATGATG TTTTTTATGCTTTTT motA 837791 - 836877 - | Flagellar motor protein A TERM 1316 837793 - 837771 - G 100 -8.5 -5.86061 | opp_overlap 837771 TTGTACGAAAAAAAA CCTTGAAGT GGAAA ACTCCAAGG TTTAAATTTTCTTTA pssA 838334 - 837795 - | Phosphatidylserine synthase TERM 1317 838676 - 838666 - g 78 -2.4 -5.44119 | CGTACGTTAAAAAAA GGGC TTC GTCC GATCGATACACATCC psd 838459 - 839256 + | Phosphatidylserine decarboxylase TERM 1318 839262 - 839247 - T 91 -6.1 -5.45802 | opp_overlap 839246 GGCGCAAAAGAAAAA GAGCC AATAGA GGCTC AATTATGATGTTTGT sda 839444 - 839265 - | Histidine kinase KinA inhibitor Sda TERM 1319 839502 - 839485 - H 70 -2.7 -5.05505 | opp_overlap 839485 839488, overlap 839488 ACCATAAATCAAAAA TAAGAAC AATC GTTCTGA TTATCCACATGTGAT Aflv_0811 839684 - 840196 + | Predicted hydrolase of the HAD superfamily TERM 1320 840961 - 840972 + GF 78 -4.4 -5.16237 | opp_overlap 840961 TATCAATTGAACGAA CAAC AGAC GTTG TTTTTTGGTGGGCTT Aflv_0812 840187 - 841305 + | Predicted GTPase aroD 841253 - 842152 + | Shikimate 5-dehydrogenase Aflv_0814 842146 - 842439 + | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein TERM 1321 842704 - 842714 + GF 73 -5.4 -4.63218 | opp_overlap 842700, overlap 842700 GCGATCATATACGTA CGAT ACG ATCG TTTTGTTGAAGCAAA Aflv_0815 842408 - 843016 + | Nicotinic acid mononucleotide adenylyltransferase Aflv_0816 843006 - 843581 + | Predicted HD superfamily hydrolase involved in NAD metabolism Aflv_0817 843578 - 843934 + | Uncharacterized conserved protein, Iojap family TERM 1322 844168 - 844185 + G 76 -6.9 -4.56775 | ATGAAAGCAGAGGAG CGGGGGG TAAA CCTCTCG TTTTTCCAGCAAGAT Aflv_0818 843931 - 844671 + | SAM-dependent methyltransferase TERM 1323 844669 - 844705 + T 100 -19.1 -3.55444 | opp_overlap 844669 844673, overlap 844673 TTCATTGCGCAAAAA TAAAGATCCCAAAAGTG ACT TACTTTTGGGATCTTTA TTTAACGAATAAGCA TERM 1324 844705 - 844669 - T 100 -18.4 -4.58395 | opp_overlap 844669 844673, overlap 844673 TTCATTGCGCAAAAA TAAAGATCCCAAAAGT GACTT ACTTTTGGGATCTTTA TTTAACGAATAAGCA TERM 1325 844701 - 844673 - T 100 -14.8 -4.85782 | opp_overlap 844669 844673, overlap 844669 TTGCGCAAAAATAAA GATCCCAAAAGT GACTT ACTTTTGGGATC TTTATTTAACGAATA TERM 1326 844673 - 844701 + T 100 -15.5 -4.42062 | opp_overlap 844673 844669, overlap 844669 TTGCGCAAAAATAAA GATCCCAAAAGTG ACT TACTTTTGGGATC TTTATTTAACGAATA comER 845563 - 844733 - | Late competence protein ComER (pyrroline-5-carboxylate reductase) comEA 845640 - 846236 + | Late competence protein ComEA (DNA binding and uptake) TERM 1327 846231 - 846216 - f 82 -4 -5.42198 | CTTGAAAAAATAAAA GAACAA ATTG TCGTTC GCTAAAATTGACGAT TERM 1328 846313 - 846325 + G 76 -7.7 -4.20918 | GGGATCAATATTTTA TGGCT CAA AGCCA TTTATTAGCGTTACG comEB 846282 - 846749 + | Late competence protein ComEB (DNA binding and uptake) TERM 1329 846770 - 846788 + F 80 -10.2 -3.61902 | CGTTTATGTGGCGAT GGCGGCCG TTT TGGCCGTC TTGTCTATGCTAACA Aflv_0822 846811 - 846927 + | hypothetical protein TERM 1330 848347 - 848331 - g 71 -2.3 -5.09173 | opp_overlap 848331 GAACATTGGAAAAAA CGAAA GCAATCG TTTCG TGTTGGGGAAGATGT comEC 846909 - 849002 + | Late competence protein ComEC (membrane metal-binding protein and hydrolase of the metallo-beta-lactamase superfamily) TERM 1331 849037 - 849017 - T 100 -8.3 -5.62045 | opp_overlap 849017 ATATACAAGAAAAAA GAGACTGCA ACA CGCAATCTC TTTTAGGTGTCCATT Aflv_0824 849212 - 849051 - | hypothetical protein TERM 1332 849153 - 849165 + g 82 -3.3 -5.47399 | overlap 849132 AACGGCGTCGTTGCG CGTAC ATT GAACG TTTTTTTCAAATTCG TERM 1333 849302 - 849339 + H 88 -11.5 -3.6682 | gap 1, opp_overlap 849298 849300 849296, overlap 849300 849313 AAAGATAAAGATACC CGTTGGATAAACGAGTTC CTA GGGCTTGTTT-TCCAACG TTTAAATAAATGGGA TERM 1334 849351 - 849381 + H 75 -9.8 -3.34043 | opp_overlap 849351 AACGTTTAAATAAAT GGGAGTTGGCGA TGCTCAT TTGCTAACTCCC TTGTAAAATGCTCCG TERM 1335 849539 - 849511 - g 86 -8.9 -4.25458 | overlap 849514 AAGCGTATGAACAAA TTATTCGTCGGAC GTT GTCAGACGAAGAA CGTGAATGGAATGTT TERM 1336 849536 - 849514 - g 77 -10.6 -3.12942 | overlap 849511 CGTATGAACAAATTA TTCGTCGGAC GTT GTCAGACGAA GAACGTGAATGGAAT TERM 1337 849604 - 849617 + G 86 -6.7 -5.00616 | overlap 849600 TGGCACTTGAAGATG CGGAA ACGC TTCCG TTTTTTGGAGAGAGG Aflv_0825 849489 - 850406 + | DNA polymerase III, delta subunit TERM 1338 850400 - 850422 + T 89 -9.2 -4.77165 | opp_overlap 850398 850395 850394 TTTCTTAAAGCTACA GCGGTAGA GAAACAA TCTACCGC TTTTGTTGTAGCGCC Aflv_0826 851141 - 850416 - | Transcriptional regulator, Crp family TERM 1339 851145 - 851122 - G 100 -8.9 -4.87318 | opp_overlap 851111 851122 CCCAAAACGGAAAAA CAGCTTGCC GTGTAT GACAAGCTG TTTTTTCATTATGCT TERM 1340 851122 - 851145 + g 91 -7.4 -5.33848 | opp_overlap 851122, overlap 851111 CCCAAAACGGAAAAA CAGCTTGCCG TGTA TGACAAGCTG TTTTTTCATTATGCT rpsT 851462 - 851154 - | Ribosomal protein S20 TERM 1341 851266 - 851282 + g 81 -7.3 -4.62904 | opp_overlap 851266, overlap 851256 TTTTTCGTTGCAAAT GCGAAAG CTT CTTTTGC TTTTTCCACGTCTTT gpr 851613 - 852716 + | Germination protease TERM 1342 853028 - 853038 + G 80 -2.6 -5.44119 | AAACAACAATTCCCG TATT CTC AATA TTTTTTTCAAGTGAC TERM 1343 853432 - 853445 + G 70 -8.1 -3.71848 | overlap 853440 AGAATTGGAGAAGCG CGGCA TTGG TGCCG TTGTTGATACAACGG TERM 1344 853440 - 853462 + G 72 -7.1 -3.93583 | gap 1, overlap 853432 AGAAGCGCGGCATTG GTGCCGTTGT TGAT ACAACGG-AC TTTATCAGTAAATTG spoIIP 852782 - 853951 + | Stage II sporulation protein P Aflv_0830 853952 - 854266 + | hypothetical protein TERM 1345 854252 - 854280 + F 90 -5.3 -5.53288 | opp_overlap 854257, overlap 854257 ATGCTCTCATTGATG CAAAAGGCAGGAT AGC ATTCCGCCTTTTC TTTTTTTGCGTTGAA TERM 1346 854257 - 854275 + F 90 -5.2 -5.55855 | opp_overlap 854257, overlap 854252 CTCATTGATGCAAAA GGCAGGAT AGC ATTCCGCC TTTTCTTTTTTTGCG lepA 854361 - 856187 + | Membrane GTPase LepA TERM 1347 856209 - 856185 - f 95 -11.5 -4.77438 | opp_overlap 856188, overlap 856188 ATGGACGACCAAAAA TAACCGCAGAA TCA TTCTGCGGTTT TTTTATATAGAAAAG TERM 1348 856188 - 856206 + F 100 -13.2 -5.71712 | opp_overlap 856185 856188 GACGACCAAAAATAA CCGCAGAA TCA TTCTGCGG TTTTTTTATATAGAA TERM 1349 856206 - 856188 - f 100 -13.2 -4.49314 | opp_overlap 856188, overlap 856185 GACGACCAAAAATAA CCGCAGAA TCA TTCTGCGG TTTTTTTATATAGAA hemN 856226 - 857377 + | Coproporphyrinogen III oxidase hrcA 857455 - 858489 + | Transcriptional regulator of heat shock gene TERM 1350 858503 - 858527 + F 90 -10.7 -4.21827 | opp_overlap 858501 858504, overlap 858504 858525 AGCGATGTCAATATT ATGGATGGGGA ATT TCCCCATCCGC TTTTCAAGTGTTTAA TERM 1351 858504 - 858526 + F 95 -14.2 -3.12373 | opp_overlap 858501 858504, overlap 858503 858525 GCGATGTCAATATTA TGGATGGGGA ATT TCCCCATCCG CTTTTCAAGTGTTTA TERM 1352 858526 - 858504 - f 81 -12 -2.75074 | opp_overlap 858504 858503 858525, overlap 858501 GCGATGTCAATATTA TGGATGGGGA ATT TCCCCATCCG CTTTTCAAGTGTTTA grpE 858535 - 859146 + | Molecular chaperone GrpE (heat shock protein) TERM 1353 859466 - 859425 - g 71 -6.9 -4.2008 | gap 1, opp_overlap 859424 859423 859457, overlap 859413 859426 859455 859457 ATACACCGCAACAAA TTTCTGCG-ATGATTTTA CAATACT TAAAATCATACGCAGAAG CGTATTTAGGTGAGC TERM 1354 859465 - 859426 - g 77 -10.4 -3.11325 | gap 1, opp_overlap 859424 859423 859457, overlap 859413 859425 859455 859457 TACACCGCAACAAAT TTCTGCG-ATGATTTTA CAATACT TAAAATCATACGCAGAA GCGTATTTAGGTGAG TERM 1355 860675 - 860663 - g 72 -6.3 -4.25859 | overlap 860672 CGGAAGCGAAAAGAA GAAGT AGA ACTTC GCAACGAAGCAGACC TERM 1356 860684 - 860672 - g 70 -7.7 -3.65786 | overlap 860663 AAAGAAGAAGTAGAA CTTCG CAA CGAAG CAGACCATCTCATTT TERM 1357 860941 - 860927 - g 78 -4.2 -5.16572 | overlap 860929 AGCGAAGGCAAAAAA GACGAC AAC GTTGTC GATGCGGAATTTGAA TERM 1358 860942 - 860929 - g 71 -6.7 -4.20888 | overlap 860927 CGAAGGCAAAAAAGA CGACA ACGT TGTCG ATGCGGAATTTGAAG dnaK 859160 - 860977 + | Chaperone DnaK (HSP70) TERM 1359 861017 - 860989 - f 100 -6.8 -5.5454 | gap 1, opp_overlap 860989 GTAAACAAACAAAAA GTCAAAGTC-AGG CCTG CCTTGGCTTTGAC TTTTTTGCTATGGAA TERM 1360 860989 - 861017 + F 100 -10.4 -5.21709 | opp_overlap 860989 GTAAACAAACAAAAA GTCAAAGTCAGG CCTGC CTTGGCTTTGAC TTTTTTGCTATGGAA dnaJ 861103 - 862230 + | DnaJ-class molecular chaperone with C-terminal Zn finger domain Aflv_0837 862254 - 863192 + | Ribosomal protein L11 methylase TERM 1361 863306 - 863321 + GF 70 -5.4 -4.35483 | GTGATGCGCATGAAT GAAGGT GATC GCCTTC TTTGTTGTAATGAAC TERM 1362 863797 - 863783 - gf 70 -5.7 -4.30833 | opp_overlap 863783 863782 863772, overlap 863772 CAAACGATGAACAAA GAGGA CTCTC TCCTC ATCGTTTTTGGACCA Aflv_0838 863198 - 863956 + | hypothetical protein Aflv_0839 863916 - 865319 + | 2-methylthioadenine synthetase rpsU 865378 - 865593 + | Ribosomal protein S21 Aflv_0841 865608 - 866051 + | hypothetical protein TERM 1363 866075 - 866054 - f 100 -13.1 -4.28774 | opp_overlap 866054 GCATTTAAGTTAAAA CACCTTACG AACT CGTAAGGTG TTTTTTCTGTTTTTG TERM 1364 866054 - 866075 + F 100 -13.1 -5.69068 | opp_overlap 866054 GCATTTAAGTTAAAA CACCTTACG AACT CGTAAGGTG TTTTTTCTGTTTTTG TERM 1365 866084 - 866094 + F 100 -4 -6.11229 | TAAGGTGTTTTTTCT GTTT TTG AAAC TTTTTTTCTTTTCAT Aflv_0842 866122 - 866802 + | Peptidase S14 family, clpP-like protein Aflv_0843 866799 - 867788 + | hypothetical protein Aflv_0844 867796 - 868131 + | Uncharacterized conserved protein, probably secreted TERM 1366 868142 - 868176 + F 90 -8.7 -5.02323 | gap 1, opp_overlap 868141 868142 AATAAGTGCTATAAC CCCCATTTCG-CTCAT ACAT ATGAGATGAAAGGGGG TTTTGTTTATGATCG Aflv_0845 868179 - 868469 + | hypothetical protein TERM 1367 869321 - 869332 + G 78 -2.2 -5.44721 | GTTCGTTTTTGGTCG TGGA AAAT TCCG TTTTTTTGGGATCAT TERM 1368 869469 - 869457 - g 74 -4.8 -4.85782 | GGCGCGAAAAAGAAA TCGC TGTTC GCGA ATATTCATACGATCA Aflv_0846 868481 - 869668 + | Stage IV sporulation protein YqfD TERM 1369 870014 - 869992 - gf 75 -3.3 -5.1361 | overlap 870005 AGAAATTGGAAAAAA CGCGAAAGG AAAAG CGATTCGCG TCAAAACGCTCGGTC TERM 1370 870023 - 870005 - gf 71 -5.2 -4.564 | overlap 869992 870021 AACGCGAAAGGAAAA GCGATTCG CGT CAAAACGC TCGGTCAGCGTCAAT TERM 1371 870309 - 870332 + GF 79 -11 -3.15999 | opp_overlap 870303 870308 AACGATTAATTGAAC GCGGTGCAAT TGAA ATTGCTCCGC TTGCCTATATGCGCG phoH 869672 - 870634 + | Phosphate starvation-inducible protein PhoH, predicted ATPase TERM 1372 870868 - 870854 - gf 89 -11.4 -3.51976 | opp_overlap 870842, overlap 870842 870843 870850 AATTCGCGAAATCAA CCGCGA TTA TCGCGG GAAAGATCAGCCGAC Aflv_0848 870576 - 871160 + | Predicted metal-dependent hydrolase dgkA 871167 - 871553 + | Diacylglycerol kinase era 871609 - 872529 + | GTPase Aflv_0851 872554 - 872772 + | hypothetical protein TERM 1373 873344 - 873359 + G 83 -9 -4.21768 | GATCCACACCGCATT CCGATG ACGC CATCGG TTTTAAAATTACTTC recO 872747 - 873553 + | Recombinational DNA repair protein (RecF pathway) TERM 1374 873563 - 873540 - f 77 -8.2 -4.16943 | CGTTAGACGGTAAAA GCGGACAA ATATAGCG TTGTCCGC TTCCCACTTTTGTTT Aflv_0853 873675 - 874274 + | N-terminal HTH domain arsR family and two C-terminal CBS domains TERM 1375 875053 - 875037 - g 86 -8 -4.69214 | GATGTAACAAACAAA GCCGTT GAAGA AACGGC GAACGTCATTATGAA Aflv_0854 874287 - 875093 + | hypothetical protein TERM 1376 875140 - 875091 - f 84 -6.7 -4.87318 | gap 1, opp_overlap 875097 875103, overlap 875103 CGCAAAAGGGAAAAA TAAGAAGACGAAGCACA-ATCACA ACG TGTGATATGTGCTTTTCCTTTTTA TAAAAACATTTGTAT TERM 1377 875097 - 875134 + F 75 -5.7 -4.83169 | gap 1, opp_overlap 875091 875103, overlap 875103 AGGGAAAAATAAGAA GACGAAGCACA-ATCACA ACG TGTGATATGTGCTTTTCC TTTTTATAAAAACAT TERM 1378 875128 - 875103 - f 77 -9.9 -3.51206 | gap 1, opp_overlap 875097 875103, overlap 875091 AAATAAGAAGACGAA GCACA-ATCACA ACG TGTGATATGTGC TTTTCCTTTTTATAA TERM 1379 875103 - 875128 + F 93 -9.9 -4.82678 | gap 1, opp_overlap 875103 875091, overlap 875097 AAATAAGAAGACGAA GCACA-ATCACA ACG TGTGATATGTGC TTTTCCTTTTTATAA TERM 1380 876846 - 876815 - g 70 -7.4 -3.85817 | gap 1 ATGTTGCGCGACAAA TCGATCGCAT-TTAC GGT GCAAGAGGCGATCGA AGGCGCGTTCAACAT dnaG 875390 - 877204 + | DNA primase (bacterial type) TERM 1381 877307 - 877297 - g 74 -6.8 -4.258 | opp_overlap 877289 877297 TTACTTATGAAGAAA TCGC TGA GCGA TTATCCTCGTTTGAT sigA 877197 - 878315 + | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) TERM 1382 878363 - 878326 - f 70 -8.7 -3.32066 | opp_overlap 878326 878330, overlap 878330 AATAACCGTTTACAA GAAATAGTTTACTTC TTACAATG GAAGTAAGCTATTTC TTTATTTAGGAAGGA TERM 1383 878326 - 878363 + F 93 -11.6 -4.41348 | opp_overlap 878326 878330, overlap 878330 AATAACCGTTTACAA GAAATAGTTTACTTCT TACAAT GGAAGTAAGCTATTTC TTTATTTAGGAAGGA TERM 1384 878330 - 878359 + F 81 -6.6 -4.78326 | opp_overlap 878330 878326, overlap 878326 ACCGTTTACAAGAAA TAGTTTACTTCT TACAAT GGAAGTAAGCTA TTTCTTTATTTAGGA TERM 1385 878424 - 878412 - g 74 -4.9 -4.88646 | AAAAACGAAAAGAAA TCATT ATC AATGA AATTAAATATTGGAA Aflv_0857 878390 - 878923 + | hypothetical protein cccA 879033 - 879395 + | Cytochrome c550 TERM 1386 879410 - 879431 + F 100 -9.5 -5.25735 | opp_overlap 879409 879410 AACGAAGCGAAAAAG TCCCTTTAC TTCG GTGAAGGGA TTTTTCGTTTTTTGC Aflv_0859 879474 - 880190 + | Predicted SAM-dependent methyltransferase Aflv_0860 880187 - 881305 + | hypothetical protein TERM 1387 881325 - 881310 - T 91 -6.1 -5.36441 | opp_overlap 881310 CGTTCATATAAAAAA GAGGC TTATTC GCCTC TTTTTTTCACTTTTG TERM 1388 881310 - 881325 + T 95 -6.1 -5.61824 | opp_overlap 881310 CGTTCATATAAAAAA GAGGC TTATTC GCCTC TTTTTTTCACTTTTG ispH 882262 - 881315 - | 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH Aflv_0862 882797 - 882330 - | hypothetical protein Aflv_0863 882948 - 884228 + | ATP-dependent RNA helicase Aflv_0864 884242 - 885129 + | Endonuclease IV TERM 1389 885162 - 885119 - Tf 72 -3.2 -5.00884 | gap 1, opp_overlap 885129 885132, overlap 885132 ATGTTCGTGAAAAAA TTGTTGAGTA-GAAGGCTGTC ATC GGCAGCCTTCTTACTGTATAA ATTGGCGAATGAGGT TERM 1390 885129 - 885151 + TF 100 -14.2 -3.33708 | opp_overlap 885119 885132, overlap 885132 AAAAATTGTTGAGTA GAAGGCTGTC ATC GGCAGCCTTC TTACTGTATAAATTG TERM 1391 885132 - 885148 + TF 84 -10.1 -3.80018 | opp_overlap 885132 885119, overlap 885129 AATTGTTGAGTAGAA GGCTGTC ATC GGCAGCC TTCTTACTGTATAAA Aflv_0865 885505 - 885152 - | hypothetical protein Aflv_0866 885473 - 886366 + | hypothetical protein TERM 1392 887006 - 886989 - g 74 -6.3 -4.50627 | opp_overlap 886989 GACCGATTAAATAAA CAACATC ACAT GACGTTG CTTCTTGTTACTCAC Aflv_0867 886425 - 887180 + | ABC-type Mn2+/Zn2+ transport system, ATPase component Aflv_0868 887195 - 888028 + | ABC-type Mn2+/Zn2+ transport system, permease component TERM 1393 888434 - 888483 + G 100 -15.3 -5.03945 | gap 1, opp_overlap 888446 888449, overlap 888443 TACGGCATGTGTCCG CTG-TGCCAACAACAAGCTGACGT GTA ATGTCAGCTTGTTGTTGTAAGCAG TTTTTCTACTTGTTG zur 888035 - 888460 + | Zn2+ uptake regulation protein TERM 1394 888443 - 888473 + T 100 -17.8 -3.3341 | opp_overlap 888446 888449, overlap 888434 TGTCCGCTGTGCCAA CAACAAGCTGACGT GTA ATGTCAGCTTGTTG TTGTAAGCAGTTTTT TERM 1395 888470 - 888446 - T 88 -11.5 -3.61398 | opp_overlap 888443 888434, overlap 888449 CCGCTGTGCCAACAA CAAGCTGACGT GTA ATGTCAGCTTG TTGTTGTAAGCAGTT TERM 1396 888467 - 888449 - T 71 -7.4 -3.9461 | opp_overlap 888443 888434, overlap 888446 CTGTGCCAACAACAA GCTGACGT GTA ATGTCAGC TTGTTGTTGTAAGCA Aflv_0870 889038 - 888463 - | Putative nucleotidase, HAD superfamily Aflv_0871 889170 - 889502 + | Uncharacterized membrane protein TERM 1397 889504 - 889526 + T 100 -15 -5.34381 | opp_overlap 889504 889507 TCCGATTTTGGTAAA TAAGAGGGGA ATG TCCCCTCTTA TTTTTGTTTCCCTTT TERM 1398 889526 - 889504 - T 100 -15 -3.54424 | opp_overlap 889504, overlap 889507 TCCGATTTTGGTAAA TAAGAGGGGA ATG TCCCCTCTTA TTTTTGTTTCCCTTT TERM 1399 889523 - 889507 - T 93 -12.3 -3.9122 | opp_overlap 889504, overlap 889504 GATTTTGGTAAATAA GAGGGGA ATG TCCCCTC TTATTTTTGTTTCCC ispG 890618 - 889524 - | 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase TERM 1400 890448 - 890411 - G 72 -9.3 -3.16564 | TTTTTATTTCAGCAA TCGCATCTGC-TGCCCT TTCATC AGGGCAAGC-GACGCGA ACAATTTGGCATCCA TERM 1401 890496 - 890512 + g 73 -3.7 -4.93296 | opp_overlap 890494 AATTTGGGCAACAGT CGCAT CGACGTC ATGCG TTTTTGTCGTCGTCA Aflv_0873 891027 - 890698 - | Uncharacterized LisM domain containing protein mcpB 891149 - 892900 + | Methyl-accepting chemotaxis sensor protein TERM 1402 892924 - 892902 - T 76 -9.2 -3.72363 | opp_overlap 892902 892905 892921, overlap 892905 CATTTAAATTGTAAA GAAGCAGG TCATCAG CCTGCTTC TTTGACGGAAGGAAG TERM 1403 892902 - 892924 + T 77 -9.9 -3.53012 | opp_overlap 892902 892905, overlap 892905 892921 CATTTAAATTGTAAA GAAGCAGGT CATCA GCCTGCTTC TTTGACGGAAGGAAG Aflv_0875 893683 - 892913 - | Uncharacterized membrane protein TERM 1404 893505 - 893523 + g 73 -3.8 -5.02323 | overlap 893497 TCTTCGGTCAATAGT TGATGGGT TGA GCCGATCA TTTTGTTTATACTGA TERM 1405 893879 - 893901 + H 100 -12.1 -5.76949 | TGCAGGGTCCATTTT CCTCGCTAA GTGAG TTAGCGAGG TTTTTTTTGCAAATA sodA 894044 - 894652 + | Superoxide dismutase TERM 1406 894660 - 894684 + GF 100 -15.1 -5.04597 | opp_overlap 894660 CGAAATAATGATGAA GAGCTCGGCAA ATT TTGTCGAGCTC TTTTTGTATATCGCT TERM 1407 894684 - 894660 - gf 100 -12.9 -3.35358 | opp_overlap 894660 CGAAATAATGATGAA GAGCTCGGCAA ATT TTGTCGAGCTC TTTTTGTATATCGCT TERM 1408 894893 - 894879 - gf 76 -4.3 -5.0133 | opp_overlap 894887 TATGTTTGGAAAAAA GTGAA CAGTT TTCAC GCCCTAGGTGTGTAC TERM 1409 895302 - 895319 + GF 88 -6.9 -5.10461 | CTATGTTTGTTTATC GCTGCGG TGAT CCTCAGC TTTTTCTTACATCGA TERM 1410 895609 - 895624 + GF 72 -6.2 -4.28925 | overlap 895606 CGATTTTATTTGGTG GCATAT TGTT ATATGC TTCTGTTTTTTTACT Aflv_0877 894603 - 895958 + | Permease of the major facilitator superfamily TERM 1411 897421 - 897404 - g 79 -8.5 -4.13014 | TTTACATGTTTAAAA CAGCAAT AGCG ATTGCTG GCTCTACGTACCGCC pbpA 896020 - 898173 + | Cell division protein FtsI/penicillin-binding protein 2 TERM 1412 898308 - 898298 - g 78 -4 -5.20606 | AAAGATGAAGAAAAA CAAA TGG TTTG CACTCGCAGGTGTAA pstS 898203 - 899249 + | ABC-type phosphate transport system, periplasmic component TERM 1413 899298 - 899255 - f 100 -13.3 -4.15366 | opp_overlap 899263 899269, overlap 899261 ATTGAAATAACGAAA CGTAAAGATGAGAAGCGAC ACCACA GTCGCTTCTCATCTTGCCA TGAATTTGGAAAGGG TERM 1414 899292 - 899261 - f 100 -17.5 -3.89938 | opp_overlap 899263 899269, overlap 899255 ATAACGAAACGTAAA GATGAGAAGCGAC ACCACA GTCGCTTCTCATC TTGCCATGAATTTGG TERM 1415 899263 - 899290 + G 100 -14.3 -3.07236 | opp_overlap 899261 899255, overlap 899269 AACGAAACGTAAAGA TGAGAAGCGAC ACCACA GTCGCTTCTCA TCTTGCCATGAATTT pstC 899262 - 900275 + | ABC-type phosphate transport system, permease component pstA 900278 - 901159 + | ABC-type phosphate transport system, permease component pstBB 901186 - 901995 + | ABC-type phosphate transport system, ATPase component TERM 1416 902021 - 902000 - f 100 -10.1 -5.252 | opp_overlap 902000 GATTTGGATAAAAAA TCGTGCGGG TACG CTCGCACGA TTTTTTCAAAATAAA TERM 1417 902000 - 902021 + F 100 -12.3 -5.03314 | opp_overlap 902000 GATTTGGATAAAAAA TCGTGCGGG TACG CTCGCACGA TTTTTTCAAAATAAA TERM 1418 902233 - 902209 - g 74 -4.4 -5.05079 | AGAACGATACAAAAA TTGATTTACT TGATG AGGAAATCAA CGATTTTGCGATTTT Aflv_0883 902049 - 902708 + | Phosphate uptake regulator TERM 1419 902705 - 902748 + T 76 -4.7 -5.03747 | opp_overlap 902716, overlap 902713 902716 TTACGATTTAAACGA TTAAAGCAAAAGGATGTCC AACAGC GGACATCCTTATTTTGTAA TTTTTTGGGCGATTT TERM 1420 902713 - 902740 + T 88 -8.5 -4.76171 | opp_overlap 902716, overlap 902705 902716 TAAACGATTAAAGCA AAAGGATGTCC AACAGC GGACATCCTTA TTTTGTAATTTTTTG TERM 1421 902737 - 902716 - T 91 -10.9 -4.59376 | opp_overlap 902713 902705 902716 ACGATTAAAGCAAAA GGATGTCCA ACAG CGGACATCC TTATTTTGTAATTTT TERM 1422 902716 - 902737 + T 90 -10.2 -4.42088 | opp_overlap 902716, overlap 902713 902705 ACGATTAAAGCAAAA GGATGTCC AACAGC GGACATCC TTATTTTGTAATTTT Aflv_0884 903151 - 902738 - | hypothetical protein TERM 1423 903012 - 903030 + g 70 -6 -4.27441 | AGTTTTTCAGCAAGT TCATTTCG TTC CGCAATGA TTTGTTCATACTGCT Aflv_0885 903474 - 903148 - | Uncharacterized conserved protein, probably secreted Aflv_0886 903545 - 905992 + | Nucleoside-diphosphate-sugar pyrophosphorylase fused to phosphomannomutase rpmGA 906007 - 906222 + | Ribosomal protein L33 TERM 1424 906249 - 906220 - f 70 -9.4 -2.71001 | opp_overlap 906220, overlap 906219 906223 CATCGTGAAACGAAG TAAGCAGTAGGA TTTTTT TCCTGCTGCTTA TTTTTTTACGAAAGA TERM 1425 906220 - 906249 + F 100 -11.6 -5.40072 | opp_overlap 906220 906219 906223 CATCGTGAAACGAAG TAAGCAGTAGGA TTTTTT TCCTGCTGCTTA TTTTTTTACGAAAGA Aflv_0888 906276 - 906845 + | 5-formyltetrahydrofolate cyclo-ligase TERM 1426 906901 - 906887 - f 85 -5.8 -5.34555 | opp_overlap 906887 GTACAGGAGAAAAAA TTAACA AAA TGTTAA TAATTCATGCCACAT ldh 906979 - 907956 + | L-lactate dehydrogenase TERM 1427 907956 - 907978 + F 93 -9.9 -5.04325 | opp_overlap 907956 CGTTGGGTTGCAATA GGTTGTCTC ATTCC GAGGCAACC TTTTTATAATTTCAA Aflv_0890 908024 - 908218 + | hypothetical protein Aflv_0891 908254 - 909807 + | Serine protease of Rhomboid family, contains TPR repeats Aflv_0892 910710 - 909778 - | hypothetical protein TERM 1428 910198 - 910229 + g 81 -5.2 -5.12617 | gap 1, opp_overlap 910198 AAGTGGTGCGAAGGA TGAGTCGATGACGTA TAA TACGTCCCC-ACTCA TTTTTTGACTGCTTC TERM 1429 911601 - 911591 - g 73 -5.4 -4.64048 | GAGTATAGAAATAAA CCAA TTG TTGG CGCATATTTACGCTT TERM 1430 911724 - 911746 + G 70 -7.8 -3.57309 | opp_overlap 911723 911724, overlap 911711 911727 CGTTTGTCGCAAAAT CAACGGAA GGGAATA TTCCGTTG TTTGGACAAATTTTA TERM 1431 912173 - 912163 - g 71 -3.2 -5.01732 | AATTCCGTTAAAAAA TCGA CGA CCGA CTGTCTTGCATCCGA spoVAF 910751 - 912205 + | Stage V sporulation protein AF Aflv_0894 912306 - 912548 + | hypothetical protein glcK 912533 - 913498 + | Transcriptional regulator/glucose kinase TERM 1432 913521 - 913503 - f 93 -9.6 -5.11613 | opp_overlap 913503 ATATGATGTAAAAAA CAGACGAA ACA CTCGTCTG TTTTTTTGTCGAAAA TERM 1433 913503 - 913521 + F 100 -8.9 -5.60993 | opp_overlap 913503 ATATGATGTAAAAAA CAGACGA AACAC TCGTCTG TTTTTTTGTCGAAAA Aflv_0896 913737 - 915626 + | Alkaline phosphatase superfamily protein TERM 1434 915656 - 915621 - f 70 -3.3 -4.96427 | opp_overlap 915627 915652, overlap 915627 CAACAAGAAAACAAA CGATAAGCTAGCTCT TACAAC AGAGCTAGCTTTTTT ACATACATATGTACA TERM 1435 915650 - 915627 - f 83 -11.1 -3.74652 | opp_overlap 915627, overlap 915621 GAAAACAAACGATAA GCTAGCTCT TACAAC AGAGCTAGC TTTTTTACATACATA TERM 1436 915627 - 915650 + F 93 -11.1 -5.09895 | opp_overlap 915627 915621 GAAAACAAACGATAA GCTAGCTCT TACAAC AGAGCTAGC TTTTTTACATACATA yqgT 915665 - 916579 + | Predicted carboxypeptidase TERM 1437 916602 - 916583 - T 88 -9.3 -4.65895 | opp_overlap 916583 GCCCGCACGTAAAAA GACGCCA CTATAT TGGCGTC TTTTTAATGGGCAAC TERM 1438 916583 - 916602 + T 89 -9.3 -4.72272 | opp_overlap 916583 GCCCGCACGTAAAAA GACGCCA CTATAT TGGCGTC TTTTTAATGGGCAAC Aflv_0898 916791 - 916606 - | Uncharacterized short membrane protein Aflv_0899 916924 - 917556 + | Zn-dependent hydrolase TERM 1439 917591 - 917566 - f 95 -6.1 -5.63103 | overlap 917567 917568 TTTTAAGCAAAAAAA TTCCCTTCTCT ATAC AGAGAAGGGGG TCTGGGGGATGTTTT TERM 1440 917590 - 917567 - f 86 -9.6 -3.96777 | overlap 917566 917568 TTTAAGCAAAAAAAT TCCCTTCTCT ATAC AGAGAAGGGG GTCTGGGGGATGTTT TERM 1441 917589 - 917568 - f 91 -13.1 -2.96982 | overlap 917567 917566 TTAAGCAAAAAAATT CCCTTCTCT ATAC AGAGAAGGG GGTCTGGGGGATGTT TERM 1442 918064 - 918049 - g 79 -6.8 -4.60487 | TACCATCGGCAAAAA CAAGCG GAAA CGCTCG CTCCGTTTATTGATT TERM 1443 918275 - 918261 - g 79 -8.6 -4.13767 | opp_overlap 918260 918271 TGTTCCACTTGAAAA TGAGCA AAT TGCTCA ATATATCGTTGAACG Aflv_0900 917671 - 918774 + | hypothetical protein TERM 1444 918779 - 918799 + T 95 -11.2 -5.06816 | opp_overlap 918779 TTTTTACATAAAAAA GCGATGAG GTACA CTCATCGC TTTTTATTCGCCCAT TERM 1445 918799 - 918779 - T 100 -11.2 -5.36441 | opp_overlap 918779 TTTTTACATAAAAAA GCGATGAG GTACA CTCATCGC TTTTTATTCGCCCAT Aflv_0901 919045 - 918803 - | Uncharacterized short membrane protein Aflv_0902 919813 - 919115 - | Transcriptional regulator, ArsR family TERM 1446 919347 - 919363 + g 91 -7.9 -4.87273 | opp_overlap 919346 919347 919348 919350, overlap 919348 AATGTCGGATAAAAT CCAGCGG CTT CCGCTGC TTTTTGTAAAATGTT TERM 1447 919362 - 919348 - G 79 -11.4 -2.53125 | opp_overlap 919347 919348, overlap 919347 919346 919350 ATGTCGGATAAAATC CAGCGG CTT CCGCTG CTTTTTGTAAAATGT TERM 1448 919348 - 919362 + g 89 -11.4 -3.51279 | opp_overlap 919348 919347 919346 919350, overlap 919347 ATGTCGGATAAAATC CAGCGG CTT CCGCTG CTTTTTGTAAAATGT TERM 1449 919976 - 919958 - H 79 -9 -3.9642 | AAATATTGAACTAAA GTTATACA ATA TGTATAAC CGAGATGAAGAGAGG Aflv_0903 920003 - 920374 + | Glutaredoxin family protein TERM 1450 920377 - 920397 + F 100 -8.3 -5.63857 | overlap 920379 CTATGTTTCGTAACG TCTTCACCC TAT GGGTGAATA TTTTTTTGAATTTTT TERM 1451 920379 - 920395 + F 91 -10.9 -4.41528 | overlap 920377 ATGTTTCGTAACGTC TTCACCC TAT GGGTGAA TATTTTTTTGAATTT comGA 920478 - 921554 + | Competence protein ComGA TERM 1452 921852 - 921889 + G 80 -4.9 -5.2197 | gap 1, opp_overlap 921864, overlap 921859 GCGAGCACATTACGT GGAGCAA-GTGAAGCGTA TGT TACGCTACCCGTTGTTTC TTTTTAGTTTTTGTA comGB 921538 - 922569 + | Competence protein ComGB comGC 922577 - 922879 + | Competence protein ComGC comGD 922872 - 923309 + | Competence protein ComGD comGE 923293 - 923601 + | Competence protein ComGE comGF 923598 - 924020 + | Competence protein ComGF TERM 1453 924065 - 924085 + GF 84 -3.9 -5.48825 | overlap 924067 TCTTTACCGTCATGT GCGCGCT ATTCATG AGCGCTC TTTTTTTGCATGCTG TERM 1454 924206 - 924174 - gf 70 -8.6 -3.38584 | overlap 924162 924179 AGATTACTTAATGAA GCAAACGCTTATTT ATGTG AAACAAACGCTTGC CAATACACCAGAAAA comGG 923986 - 924408 + | Competence protein ComGG aroK 924390 - 924929 + | Shikimate kinase Aflv_0912 924956 - 925144 + | hypothetical protein TERM 1455 925161 - 925142 - T 71 -6.5 -4.27316 | opp_overlap 925142 925145 TTGTTTAAGCGAAAA TAAGGCT CACGTT AGCCTTA TTTCGCTTGCAAATA Aflv_0913 925935 - 925159 - | hypothetical protein Aflv_0914 927559 - 925916 - | Superfamily II DNA/RNA helicase, SNF2 family TERM 1456 927912 - 927950 + H 100 -10.5 -5.60993 | gap 1, opp_overlap 927912 927911 927914 ACTTTCAGGTGAAAG GACAGA-GACTACCATAT GACA ATATGGGGGTCGTCTGTC TTTTTTTATGAACAA gcvT 927977 - 929071 + | Glycine cleavage system protein T (aminomethyltransferase) gcvPA 929089 - 930435 + | Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain TERM 1457 931253 - 931275 + G 81 -11.3 -2.7419 | gap 1, opp_overlap 931247 931245, overlap 931274 CATAAAACGTTTACC GGCCCACACG GTGG CG-GTGGGCC TGGTTCAGGTCCTGT gcvPB 930428 - 931882 + | Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain TERM 1458 931887 - 931918 + T 100 -10.9 -5.74086 | opp_overlap 931890, overlap 931890 ATCAAAAATAAAATA AAAGGTGCCAGGC GTGTTG GCTTGGCACCTTA TTTTTTCTTTACTTT TERM 1459 931890 - 931915 + T 100 -12.6 -4.88687 | opp_overlap 931890, overlap 931887 AAAAATAAAATAAAA GGTGCCAGGC GTGTTG GCTTGGCACC TTATTTTTTCTTTAC TERM 1460 931915 - 931890 - T 100 -10.4 -5.43329 | opp_overlap 931890 931887 AAAAATAAAATAAAA GGTGCCAGGC GTGTTG GCTTGGCACC TTATTTTTTCTTTAC Aflv_0918 932317 - 931916 - | Rhodanese-related sulfurtransferase TERM 1461 932850 - 932832 - g 100 -8.2 -5.35721 | ACAGAAGAAGAAAAA GCAGATTT AAA AAATCCGC GCTCGGCTGTTTGTT Aflv_0919 932415 - 933251 + | Lipoate-protein ligase A TERM 1462 933291 - 933335 + F 100 -6.7 -5.87996 | opp_overlap 933291 CGCTTGACTTAATTA TCAATATGTAGTATGTGGTTT TTA AAAAATCATACTATATATTGA TTTTTTTATTGATTA TERM 1463 934275 - 934287 + F 74 -9.1 -3.54414 | opp_overlap 934266 934274 934273, overlap 934273 AAAAATGCAAAATCC GCGCA TTT TGCGC TATTTGCTTGAAAAT TERM 1464 935305 - 935284 - f 95 -8.7 -5.50723 | gap 1, overlap 935288 TGAGGAAAATAAAAA GCAAGCGCTC GGG GAGCGCC-GC GTCGGTCTTGGCGTG TERM 1465 935302 - 935288 - f 90 -11.4 -4.02606 | overlap 935284 GAAAATAAAAAGCAA GCGCTC GGG GAGCGC CGCGTCGGTCTTGGC TERM 1466 935466 - 935456 - f 85 -5.4 -5.27335 | opp_overlap 935456 CTTGCGAAAGAAAAA GGAA GCT TTCC GTTTTTAGTTGGCGA TERM 1467 936238 - 936258 + F 84 -10.4 -3.87364 | opp_overlap 936238 TTTATAATGTAAAAA GGGACGGG AAAAA CCCGTTCC TTATCTTATTATGAC TERM 1468 936258 - 936238 - f 84 -8.2 -4.78149 | opp_overlap 936238 TTTATAATGTAAAAA GGGACGGG AAAAA CCCGTTCC TTATCTTATTATGAC splB 936338 - 937363 + | Spore photoproduct (thymine dimer) lyase mntR 937373 - 937861 + | Mn-dependent transcriptional regulator (DtxR family) TERM 1469 937850 - 937871 + GT 100 -6.6 -6.07374 | opp_overlap 937850 AAACAGAACGAGCAA GAACAGGC ATAAAC GCTTGTTC TTTTTTGTTTTTTAT Aflv_0924 937812 - 938813 + | Predicted esterase of the alpha-beta hydrolase superfamily TERM 1470 938824 - 938844 + T 95 -2.5 -6.11243 | opp_overlap 938816, overlap 938812 938812 ATTGAAAGAAAAAAA TCGGGTT AAAAAGA GGCCCGA TTTTTTTTCTTCCCT Aflv_0925 939191 - 938829 - | Uncharacterized short membrane protein Aflv_0926 940120 - 939191 - | Predicted metal-dependent enzyme Aflv_0927 940236 - 940799 + | Uncharacterized membrane protein TERM 1471 940832 - 940853 + F 71 -6.6 -4.09685 | AGCAAAGGGGGGAGA GGGGGAAT GGTTCG ATTCCTCC TTTTAAACGGTCCGA Aflv_0928 940838 - 941284 + | 3-dehydroquinate dehydratase II Aflv_0929 941287 - 942348 + | Xaa-Pro aminopeptidase efp 942367 - 942924 + | Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) TERM 1472 942955 - 942932 - f 74 -5.2 -4.66537 | opp_overlap 942932, overlap 942927 GTGCGTAATAGAAAA GGTGCTCC AGAAGTAA GGGGCACC TTTTTCGACAATTAT TERM 1473 942932 - 942955 + F 81 -7.4 -4.60255 | opp_overlap 942927 942932 GTGCGTAATAGAAAA GGTGCTCC AGAAGTAA GGGGCACC TTTTTCGACAATTAT TERM 1474 943064 - 943089 + F 93 -9.8 -5.0065 | opp_overlap 943066 AATTCAATGTCCATA CATCTCCTTG TGACGT CAAGGGGATG TTTTCTTTGTAACTA TERM 1475 944139 - 944153 + G 100 -6.4 -5.68023 | overlap 944141 ACACATTGCTTGCGG TTGTCG GTC CGACGA TTTTTTTCGTTGTCA Aflv_0931 943946 - 944275 + | Uncharacterized short membrane protein spoIIIAA 944272 - 945213 + | Stage III sporulation protein AA (mutants block sporulation after engulfment) spoIIIAB 945214 - 945726 + | Stage III sporulation protein AB (mutants block sporulation after engulfment) spoIIIAC 945742 - 945948 + | Stage III sporulation protein AC (mutants block sporulation after engulfment) spoIIIAD 945991 - 946356 + | Stage III sporulation protein AD (mutants block sporulation after engulfment) spoIIIAE 946361 - 947521 + | Stage III sporulation protein AE (mutants block sporulation after engulfment) spoIIIAF 947529 - 948107 + | Stage III sporulation protein AF (mutants block sporulation after engulfment) spoIIIAG 948114 - 948680 + | Stage III sporulation protein AG (mutants block sporulation after engulfment) TERM 1476 948715 - 948705 - g 74 -4 -5.04385 | opp_overlap 948705 CATATGTTGAAAAAA CAAA CGG TTTG GTTGTTAACAATGTT TERM 1477 948838 - 948828 - g 78 -5.4 -5.04356 | GCAAACAATGAAAAA GGTT TAA AACC GACGGATGAAGCCAT spoIIIAH 948693 - 949256 + | Stage III sporulation protein AH (mutants block sporulation after engulfment) TERM 1478 949254 - 949271 + F 100 -9.9 -5.53288 | opp_overlap 949254 GTTCGTTTTCAAAAA TAACCGG AAAT CCGGTTA TTTTTTTCGGTTGAA TERM 1479 949271 - 949254 - f 91 -9.9 -4.56597 | opp_overlap 949254 GTTCGTTTTCAAAAA TAACCGG AAAT CCGGTTA TTTTTTTCGGTTGAA TERM 1480 949561 - 949551 - g 82 -3.2 -5.48054 | ATTAAAATGAAAAAA GCTG GAG CAAC AGAACAAGTTGTCGT TERM 1481 949699 - 949689 - g 70 -5.4 -4.42235 | AAGCCGGAAAAACAA GTTG TTG CAAC AGAAAACTTACATAC accB 949446 - 949946 + | Biotin carboxyl carrier protein accC 949960 - 951312 + | Biotin carboxylase Aflv_0942 951334 - 951729 + | hypothetical protein TERM 1482 951768 - 951731 - f 95 -12.1 -4.20918 | opp_overlap 951737 951757, overlap 951734 951737 CGGAAGTCGAATAAA GAAGAGGGGCAATCTCA TTGA TGAGATCGCCCTTTTTC CATGGGTGAGTGTTT TERM 1483 951765 - 951734 - f 77 -8 -4.2204 | opp_overlap 951737 951757, overlap 951731 951737 AAGTCGAATAAAGAA GAGGGGCAATCTCA TTGA TGAGATCGCCCTTT TTCCATGGGTGAGTG TERM 1484 951762 - 951737 - f 93 -14.1 -2.81182 | opp_overlap 951737 951757, overlap 951734 951731 TCGAATAAAGAAGAG GGGCAATCTCA TTGA TGAGATCGCCC TTTTTCCATGGGTGA TERM 1485 951737 - 951762 + F 100 -11.9 -4.67353 | opp_overlap 951737 951734 951731, overlap 951757 TCGAATAAAGAAGAG GGGCAATCTCA TTGA TGAGATCGCCC TTTTTCCATGGGTGA nusB 951778 - 952236 + | Transcription termination factor folD 952260 - 953111 + | 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Aflv_0945 953126 - 954475 + | Exonuclease VII large subunit Aflv_0946 954472 - 954684 + | Exonuclease VII small subunit Aflv_0947 954687 - 955559 + | Geranylgeranyl pyrophosphate synthase TERM 1486 955607 - 955636 + F 86 -7.1 -5.08824 | opp_overlap 955606, overlap 955609 GTGGAAAAGAAATGT TAGCCGTTCACAC GTTC GTGTAAGCGGCTC TTTTTTGCGTACAAA TERM 1487 955609 - 955634 + F 89 -9.7 -4.17608 | opp_overlap 955606, overlap 955607 GGAAAAGAAATGTTA GCCGTTCACAC GTTC GTGTAAGCGGC TCTTTTTTGCGTACA dxs 955722 - 957623 + | Deoxyxylulose-5-phosphate synthase TERM 1488 957774 - 957753 - g 78 -8.7 -3.85817 | ATGCGGCTTGACAAA CCAGGGGAA AAAG TTCCCGTGG ACATTCCGCTAACGG TERM 1489 958226 - 958214 - g 71 -3.3 -5.00616 | opp_overlap 958224 GTTTGTCGGAAAAAA GGGGA TTG TCCGC GATGCACGTGTTCAT Aflv_0949 957627 - 958469 + | Predicted rRNA methylase TERM 1490 958460 - 958486 + F 91 -11.7 -3.93256 | opp_overlap 958458 AAATAAAGAACATGC GGGGGAATAAC GATCG GTTATTCCCTC TTGTTTGCCCGTCTA ahrC 958554 - 959012 + | Arginine repressor recN 959031 - 960761 + | ATPase involved in DNA repair TERM 1491 961291 - 961279 - g 79 -7.7 -4.38092 | overlap 961270 961276 GAACAAGGAAAACAA TCTCC CGG GGAGA AGGCTGGCATTCGAG spoIVB 960877 - 962154 + | Predicted membrane-associated Zn-dependent protease TERM 1492 962146 - 962165 + F 100 -8.6 -5.69262 | opp_overlap 962137 962146 CGAAATGAGCAAAAA GCGAGCTA ATAT TAGCTTGC TTTTTGTTTTTCTAC TERM 1493 962165 - 962146 - f 82 -6.4 -4.84363 | opp_overlap 962146, overlap 962137 CGAAATGAGCAAAAA GCGAGCTA ATAT TAGCTTGC TTTTTGTTTTTCTAC spo0A 962372 - 963151 + | Stage 0 sporulation regulator Spo0A (response regulator, REC-HTH domains) TERM 1494 963181 - 963158 - T 74 -3.8 -5.10461 | opp_overlap 963161, overlap 963161 GCGAGCTAATAAAAA TAAGGTAGTC GAGC GGCTACCTTT TTTGTTGTTCCTTTT TERM 1495 963161 - 963178 + T 100 -7.7 -5.66229 | opp_overlap 963158 963161 AGCTAATAAAAATAA GGTAGTC GAGC GGCTACC TTTTTTGTTGTTCCT TERM 1496 963178 - 963161 - T 73 -5.5 -4.64495 | opp_overlap 963161, overlap 963158 AGCTAATAAAAATAA GGTAGTC GAGC GGCTACC TTTTTTGTTGTTCCT Aflv_0954 963338 - 963174 - | hypothetical protein Aflv_0955 963376 - 964110 + | Glycerophosphoryl diester phosphodiesterase TERM 1497 964090 - 964123 + T 100 -10.5 -5.40474 | gap 1, opp_overlap 964094, overlap 964094 964118 CAAAACGTACGTGAA AAAACGCTTCGA-TCA CTC TGAATCGAAGCGTTTC TTTTTTTGGAAGCGT TERM 1498 964119 - 964094 - T 95 -11.3 -5.05782 | gap 1, opp_overlap 964090 964094 964118 ACGTACGTGAAAAAA CGCTTCGA-TCA CTC TGAATCGAAGCG TTTCTTTTTTTGGAA TERM 1499 964094 - 964119 + T 100 -11.3 -5.20328 | gap 1, opp_overlap 964094, overlap 964090 964118 ACGTACGTGAAAAAA CGCTTCGA-TCA CTC TGAATCGAAGCG TTTCTTTTTTTGGAA Aflv_0956 964356 - 964102 - | Uncharacterized short membrane protein TERM 1500 964465 - 964444 - H 71 -9.5 -2.87794 | overlap 964443 AATGTATGATGAAAG CGTCTGCAA AAAA TTGCAAACG AATAGGTGATAGGAA TERM 1501 965968 - 965948 - g 70 -2.6 -5.05606 | TGCAAGAAAAAGAAA TTGTGC GCGTCGGTG GCACAA AGCCGATTCCGATTA TERM 1502 966465 - 966481 + G 71 -6.6 -4.20025 | opp_overlap 966458 GAATAAAACGGCAGC TGCCAA ACAGC TTGGCA TTTCTATTCGAAATT Aflv_0957 964471 - 966546 + | Multidomain signal transduction protein, transcriptional regulator (PAS-PAS-AAA+-FIs domains) TERM 1503 966560 - 966536 - f 80 -2.1 -5.626 | overlap 966558 GACTTGATAAAAAAA GCATGCAATAA TAT TCATAGTATGC AAAAAGTTGCAATCA ptb 966675 - 967577 + | Phosphate butyryltransferase bcd 967594 - 968697 + | Leucine dehydrogenase TERM 1504 968735 - 968708 - f 70 -8.4 -3.32832 | opp_overlap 968712, overlap 968703 968701 968712 GCTAAAAATATGCAA TGAAGCGAGGAC GTAT GTTCTCGCTTCG TCGATGATAAAAAAT TERM 1505 968712 - 968731 + F 75 -10 -3.19463 | opp_overlap 968712 968708 968703 968701 AAAATATGCAATGAA GCGAGGAC GTAT GTTCTCGC TTCGTCGATGATAAA buk 968749 - 969864 + | Butyrate kinase lpdV 969874 - 971298 + | Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) bkdAA 971310 - 972302 + | Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) bkdAB 972305 - 973288 + | Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) TERM 1506 974076 - 974086 + G 75 -3.2 -5.24129 | AAGGGTTTAACTTAA CGTA TTT TGCG TTTTTTGTAAAAGCG bkdB 973301 - 974599 + | Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) TERM 1507 974593 - 974647 + F 87 -8.3 -4.56159 | gap 2, opp_overlap 974607 974610, overlap 974597 974607 974610 AGAAAATACACCGAT TTACTAACTAGTAAGAAGAGGGTAACG AGT TGTTATCCTCTTCTT-CTTGTTA-TGA TTTCTCTTTTCTTCC TERM 1508 974597 - 974644 + F 93 -13.8 -3.19413 | gap 1, opp_overlap 974607 974610, overlap 974593 974607 974610 AATACACCGATTTAC TAACTAGTAAGAAGAGGGTAACG AGT TGTTATCCTCTTCTT-CTTGTTA TGATTTCTCTTTTCT TERM 1509 974635 - 974607 - f 77 -10.4 -3.29096 | opp_overlap 974607 974597 974593 974610, overlap 974610 TTTACTAACTAGTAA GAAGAGGGTAAC GAGTT GTTATCCTCTTC TTCTTGTTATGATTT TERM 1510 974607 - 974635 + F 100 -13.3 -4.07515 | opp_overlap 974607 974610, overlap 974597 974593 974610 TTTACTAACTAGTAA GAAGAGGGTAACG AGT TGTTATCCTCTTC TTCTTGTTATGATTT TERM 1511 974610 - 974632 + F 83 -9.2 -4.13244 | opp_overlap 974607 974610, overlap 974607 974597 974593 ACTAACTAGTAAGAA GAGGGTAACG AGT TGTTATCCTC TTCTTCTTGTTATGA TERM 1512 976338 - 976326 - g 70 -5.5 -4.48299 | opp_overlap 976329, overlap 976327 976330 TCATATGGAAACAAA CGGAC AAC GTCCA ACGTTGCATCTTGTC TERM 1513 976587 - 976577 - g 91 -6.8 -5.58209 | opp_overlap 976576 TGAAAGTGAAAAAAA GCGA TAT TCGC ATATATGTGGCAGGT Aflv_0965 974755 - 976737 + | Methylmalonyl-CoA mutase TERM 1514 977241 - 977254 + G 71 -6.7 -4.21194 | TGAACGGAGCGGTAT TGCCA ATTA TGGCA TTTTACATCGTAACA TERM 1515 977642 - 977628 - g 78 -5.6 -4.81083 | opp_overlap 977628 TGGAAGTAGCAAAAA TGCGGG CAG CGCGCA TCATTTGGGCAAAAA Aflv_0966 976724 - 978913 + | Methylmalonyl-CoA mutase, contains C-terminal cobalamin-binding domain Aflv_0967 978910 - 980010 + | Protein kinase, ArgK family TERM 1516 980012 - 980030 + F 90 -8.8 -4.91084 | opp_overlap 980012, overlap 979990 ACGAGCAAACGTAAA GGTGTCCG TTA TGGGCACC TTTTATTGTTGAATA TERM 1517 980664 - 980647 - g 70 -7.7 -3.63627 | GGGCGATACGTTAAA GCAAGCA AAAG CGCTTGC GTTACAAAACATTGA TERM 1518 980945 - 980957 + G 70 -5.5 -4.4595 | CGCGAGGAATTTGAA GAGCG AGC TGCTC TTTTGCATTTTGTAA Aflv_0968 980066 - 981013 + | hypothetical protein Aflv_0969 981064 - 981567 + | Uncharacterized erfK/srfK family protein, probably secreted TERM 1519 981600 - 981565 - f 100 -19.2 -3.55761 | opp_overlap 981567 981570 981573, overlap 981570 981573 TACGGAGCGCTTAAA TAGAACAAGCTGGCCG AATA CGGTCAGCTTGTTCTA TATCCACATGCTTAA TERM 1520 981567 - 981598 + F 100 -19.6 -2.89039 | opp_overlap 981565 981570 981573, overlap 981570 981573 CGGAGCGCTTAAATA GAACAAGCTGGCCG AATA CGGTCAGCTTGTTC TATATCCACATGCTT TERM 1521 981595 - 981570 - f 100 -13.3 -3.81755 | opp_overlap 981567 981570 981573, overlap 981565 981573 AGCGCTTAAATAGAA CAAGCTGGCCG AATA CGGTCAGCTTG TTCTATATCCACATG TERM 1522 981570 - 981595 + F 100 -15.5 -3.59202 | opp_overlap 981570 981565 981573, overlap 981567 981573 AGCGCTTAAATAGAA CAAGCTGGCCG AATA CGGTCAGCTTG TTCTATATCCACATG TERM 1523 981592 - 981573 - f 83 -9.2 -4.03586 | opp_overlap 981570 981567 981573, overlap 981570 981565 GCTTAAATAGAACAA GCTGGCCG AATA CGGTCAGC TTGTTCTATATCCAC TERM 1524 981573 - 981592 + F 90 -11.4 -3.92996 | opp_overlap 981573 981570 981565, overlap 981570 981567 GCTTAAATAGAACAA GCTGGCCG AATA CGGTCAGC TTGTTCTATATCCAC Aflv_0970 981688 - 982248 + | Lactoylglutathione lyase TERM 1525 982674 - 982689 + G 71 -3.2 -5.07053 | overlap 982676 GGCGTATTGTCCCTC GATGGC TACG GCCATA TTTTTTACCGTAATT TERM 1526 983263 - 983287 + G 100 -9.4 -4.60889 | TAGATATTGACTCAT CGGATAAAGC AGCCC GCTTTATTCG TTTTTGCGACTCGTT Aflv_0971 982245 - 983795 + | Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) TERM 1527 983941 - 983890 - Tf 93 -14.1 -2.61873 | gap 2, opp_overlap 983895, overlap 983895 AGCATTTTTAAACAT GAAAAGGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCCTTTTT TTCATGTGCTCGGCA TERM 1528 983895 - 983936 + TF 100 -11.8 -5.59357 | gap 2, opp_overlap 983890 983895 TTTTAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTTTTTCATGTGCT TERM 1529 983936 - 983895 - Tf 100 -14 -4.49756 | gap 2, opp_overlap 983895, overlap 983890 TTTTAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTTTTTCATGTGCT Aflv_0972 985674 - 984154 - | Uncharacterized iron-regulated membrane protein Aflv_0973 985660 - 986784 + | Tripeptidase TERM 1530 986885 - 986868 - gf 73 -2.7 -5.08824 | TTTCCATCGAAAAAA TGAGC CATCCGAC GCTCA TCCCGAGCATGCCTT cheW 986750 - 987256 + | Chemotaxis signal transduction protein Aflv_0975 987278 - 987382 + | hypothetical protein TERM 1531 988286 - 988296 + G 73 -8.2 -3.64703 | overlap 988283 TTTCATTGAGGCCGT GCGC CGC GCGC TTTACATGAGCAAAA Aflv_0976 987360 - 988730 + | 6-phosphogluconate dehydrogenase TERM 1532 988793 - 988824 + T 100 -13.8 -4.44667 | opp_overlap 988796 CGTTCGCCTAATAGT TAATCCCCCTCACC ATGC GATGAGGGGGATTG TTTATTGTTCAAACA TERM 1533 988821 - 988796 - T 100 -15.5 -3.1855 | opp_overlap 988793 TCGCCTAATAGTTAA TCCCCCTCACC ATGC GATGAGGGGGA TTGTTTATTGTTCAA Aflv_0977 989437 - 988826 - | Predicted metal-dependent hydrolase TERM 1534 988996 - 989038 + g 86 -6.9 -4.9218 | gap 1, overlap 988997 GGTGTCCCGCTTGGT TGCGTTCGACGCCGAGGGCA TCAA TGCCGACGCCG-CGAATGCG TTTTTCTGCTAAGTA TERM 1535 988997 - 989037 + g 71 -8.2 -3.54585 | gap 1, overlap 988996 GTGTCCCGCTTGGTT GCGTTCGACGCCGAGGGCA TCAA TGCCGACGCCG-CGAATGC GTTTTTCTGCTAAGT zwf 990938 - 989451 - | Glucose-6-phosphate 1-dehydrogenase TERM 1536 990096 - 990131 + g 82 -3.3 -5.43553 | opp_overlap 990119 GAAATATGTTTCTAC GT-CATCGTGCGTCATC GGAC GAAG-CGCACGAAGCAC TTTTATTTTTTCGCT TERM 1537 990200 - 990216 + g 70 -5.1 -4.41548 | opp_overlap 990212 990214 TCGCCAAAAGGGCAA CCATTTG CAA CATATGG TTTTGTACCATATCG TERM 1538 991306 - 991320 + G 86 -5.6 -5.40464 | overlap 991308 GTCGTTCGTTCCAAG GTGGAG AGA CTCCTC TTTTTGTTTATGGTC TERM 1539 991308 - 991318 + G 74 -6.8 -4.31946 | overlap 991306 CGTTCGTTCCAAGGT GGAG AGA CTCC TCTTTTTGTTTATGG Aflv_0979 991059 - 991997 + | Metal-dependent hydrolase of the beta-lactamase superfamily III Aflv_0980 991994 - 992311 + | Zinc finger domain containing protein TERM 1540 992307 - 992361 + T 100 -14.8 -3.36991 | gap 3, opp_overlap 992314, overlap 992314 ATTATTATTTTGAAG TGTAAAAGGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCCTTTT-CA TGTTTAAAAATGCTG TERM 1541 992355 - 992314 - T 95 -11.8 -4.19238 | gap 2, opp_overlap 992307 992314 TTTTGAAGTGTAAAA GGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGTTTAAAA TERM 1542 992314 - 992355 + T 100 -14 -4.49756 | gap 2, opp_overlap 992314, overlap 992307 TTTTGAAGTGTAAAA GGGGCTGTCTAATAAGTCGA TTTT TCGGCT-ATTAGAC-GCCCC TTTTCATGTTTAAAA Aflv_0981 993443 - 992445 - | NADH:flavin oxidoreductase, Old Yellow Enzyme family TERM 1543 993100 - 993125 + g 72 -6.1 -4.2558 | GGAAGTGGTGATGGC GCGATGATTTC TCCG GCAACCATCGC TTTTCGTCCGGCATG proI 994337 - 993516 - | Pyrroline-5-carboxylate reductase TERM 1544 994369 - 994399 + H 91 -10.6 -4.42062 | gap 1, opp_overlap 994369 994390 CTCCAAAATAAAAAA GACCTTTC-GTCC GATAAA GGACGGAAAGGTC TTTATTTCCGCGGTA TERM 1545 994399 - 994369 - H 100 -10.6 -5.79595 | gap 1, opp_overlap 994369, overlap 994390 CTCCAAAATAAAAAA GACCTTTC-GTCC GATAAA GGACGGAAAGGTC TTTATTTCCGCGGTA Aflv_0983 994775 - 995722 + | Zn-dependent hydrolase TERM 1546 995860 - 995841 - g 89 -7.2 -5.07652 | gap 1, opp_overlap 995840 TCGTTCAAAAGAAAA GTTGGCGCA AAT TGCGC-AAC ATATTGAACAAACGT Aflv_0984 995719 - 996504 + | Short-chain dehydrogenase Aflv_0985 996516 - 996833 + | hypothetical protein TERM 1547 996845 - 996864 + T 75 -7.8 -4.0257 | opp_overlap 996845 CTAATAAAGTAAAAA GCCCGG AATAAAAG CCGGGC TTATTCGTTTTTCGG TERM 1548 996864 - 996845 - T 88 -7.8 -5.09521 | opp_overlap 996845 CTAATAAAGTAAAAA GCCCGG AATAAAAG CCGGGC TTATTCGTTTTTCGG Aflv_0986 997080 - 996865 - | Zinc finger domain containing protein (CDGSH-type) TERM 1549 996962 - 996972 + g 71 -4 -4.88405 | CCGCAACGACAGAGG GAAA ATG TTTC TTTTGTTTCAAACTT Aflv_0987 997218 - 997466 + | hypothetical protein TERM 1550 997465 - 997482 + T 71 -6.9 -4.02817 | overlap 997466 TTACAGATATTTTAT AGGGGGA CGAA TCCCCCC TTCTTATTGTGGAGA TERM 1551 997466 - 997481 + T 75 -10.4 -3.01208 | overlap 997465 TACAGATATTTTATA GGGGGA CGAA TCCCCC CTTCTTATTGTGGAG Aflv_0988 997605 - 997486 - | hypothetical protein Aflv_0989 997657 - 997857 + | hypothetical protein TERM 1552 997883 - 997849 - T 74 -6.5 -4.41548 | gap 1, opp_overlap 997861 997875 997876, overlap 997855 997858 TTAGATTGGAGAAAA TTCAAATAACCGAGGG TGTC CCCTCGGTTACC-GAT GATCGGTGAATATTG TERM 1553 997878 - 997855 - T 100 -15.4 -3.96705 | opp_overlap 997861 997875 997876, overlap 997849 997858 TGGAGAAAATTCAAA TAACCGAGGG TGTC CCCTCGGTTA CCGATGATCGGTGAA TERM 1554 997875 - 997858 - T 93 -12.7 -4.0921 | opp_overlap 997861, overlap 997855 997849 AGAAAATTCAAATAA CCGAGGG TGTC CCCTCGG TTACCGATGATCGGT Aflv_0990 998790 - 997876 - | Predicted oxidoreductase TERM 1555 998124 - 998134 + g 75 -2.4 -5.3689 | opp_overlap 998124 CATCGAATAAATAAT CGAC ATA GCCG TTTTGTTTTATTTCT TERM 1556 999211 - 999199 - g 95 -7.7 -5.05782 | opp_overlap 999198 999199 ATGTATGTGAAAAAA TGGAG CCG CTCCA CTCTTTTTACACATC nudF 998889 - 999428 + | NTP pyrophosphohydrolase TERM 1557 999446 - 999430 - f 80 -10.1 -3.71645 | opp_overlap 999430 AACTGCATATGTAAA GCGGTCA CTG CGACCGC TTTTTGTCATATCAC TERM 1558 999430 - 999446 + F 93 -9.4 -4.95155 | opp_overlap 999430 AACTGCATATGTAAA GCGGTC ACTGC GACCGC TTTTTGTCATATCAC spoIIM 999512 - 1000156 + | Stage II sporulation protein M, required for dissolution of the septal cell wall Aflv_0993 1000384 - 1001184 + | Transposase Aflv_0994 1001211 - 1001516 + | Transposase fur 1001525 - 1002106 + | Fe2+ uptake regulation protein TERM 1559 1002128 - 1002109 - f 71 -6.5 -4.26076 | opp_overlap 1002109 1002121 TGAGGGGCAGTAAAA CCTTTTC GTCTAT GAAAAGG TTTTTTCATTTATGT TERM 1560 1002109 - 1002128 + F 93 -7.2 -5.4387 | opp_overlap 1002109, overlap 1002121 TGAGGGGCAGTAAAA CCTTTTCG TCTA TGAAAAGG TTTTTTCATTTATGT Aflv_0996 1002203 - 1002415 + | hypothetical protein ripX 1002417 - 1003319 + | Site-specific recombinase XerD TERM 1561 1003320 - 1003341 + F 100 -9.5 -5.80364 | opp_overlap 1003320 CATCCACGAGCATAA CTGTGACGA TAAT TTGTCACAG TTTTTTTATTGCAAT drm 1003476 - 1004657 + | Phosphopentomutase punA 1004671 - 1005495 + | Purine nucleoside phosphorylase TERM 1562 1006388 - 1006369 - g 77 -6.4 -4.62783 | opp_overlap 1006380 TATTTAGCGGAAAAA GCATCTTC GCTT GAAGAAGC TCGTCATATGTTAGA Aflv_1000 1005514 - 1006815 + | Pyrimidine-nucleoside phosphorylase TERM 1563 1006816 - 1006838 + F 100 -12.1 -5.76633 | GATAAAATTTCGTAA CCTGAAGGA TTTAT TCCTTCAGG TTTTTTTATGTATAA TERM 1564 1007085 - 1007057 - g 78 -2.3 -5.52384 | TTTGTATGAAAAAAA TGCCCACGAGC CACTTCC GCCAGCGAGCA TGACGAAAATTATGA dacF 1006899 - 1008062 + | D-alanyl-D-alanine carboxypeptidase spoIIAA 1008157 - 1008513 + | Stage II sporulation protein AA (antagonist of anti-sigma factor, stand-alone STAS domain) spoIIAB 1008514 - 1008954 + | Stage II sporulation protein AB (anti-sigma factor, Ser/Thr protein kinase) sigF 1008962 - 1009705 + | Stage II sporulation protein AC, DNA-directed RNA polymerase sporulation-specific sigma factor (sigma-F) TERM 1565 1009722 - 1009683 - f 89 -9.4 -4.21351 | opp_overlap 1009688 AAATATTGCAACAAA TGAAAGCCCGAATGGA TGAATAAG TCCGTTCGGGCTTTTA TGCATATACATGACG TERM 1566 1009688 - 1009717 + F 95 -12.2 -4.45083 | opp_overlap 1009683 TTGCAACAAATGAAA GCCCGAATGGAT GAATAA GTCCGTTCGGGC TTTTATGCATATACA spoVAA 1009784 - 1010404 + | Stage V sporulation protein AA spoVAB 1010391 - 1010813 + | Stage V sporulation protein AB spoVAC 1010803 - 1011168 + | Stage V sporulation protein AC TERM 1567 1012178 - 1012141 - g 70 -5.6 -4.37871 | gap 2, overlap 1012131 TGAAACAAAATCAAA CGATTC--CGGCGATCGC TCAT GCGATTGCCGTTGAAGCG GTGACGTAAAGATGG spoVAD 1011177 - 1012187 + | Stage V sporulation protein AD spoVAE 1012190 - 1012510 + | Stage V sporulation protein AE-like protein spoVAE 1012507 - 1013109 + | Stage V sporulation protein AE spoVAF 1013048 - 1014535 + | Stage V sporulation protein AF TERM 1568 1014567 - 1014547 - g 73 -8.3 -3.69455 | opp_overlap 1014547 ATAAAAAGGTTGAAA CGTACCAAA ATT TATGGTACG TTTTCTTTAATTATT TERM 1569 1014547 - 1014567 + G 100 -8.3 -5.03713 | opp_overlap 1014547 ATAAAAAGGTTGAAA CGTACCAAA ATT TATGGTACG TTTTCTTTAATTATT lysA 1014541 - 1015923 + | Diaminopimelate decarboxylase TERM 1570 1015921 - 1015944 + TF 100 -11.1 -5.31275 | opp_overlap 1015921 ACGAAAGTAAAAAAA TAACCGAGG CGACAA CCTCGGTTA TTTTTTATGCTCCAA TERM 1571 1015944 - 1015921 - Tf 100 -11.8 -5.73563 | opp_overlap 1015921 ACGAAAGTAAAAAAA TAACCGAGGC GACA ACCTCGGTTA TTTTTTATGCTCCAA Aflv_1013 1016932 - 1015949 - | Predicted secreted protein ppiB 1016931 - 1017371 + | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family TERM 1572 1017458 - 1017480 + FH 74 -6.4 -4.35361 | GAGCAATGTATTGGC TGTTTATTGC AAA GTAATAGACA TTTCGTTTTATTGTG TERM 1573 1017741 - 1017762 + FH 100 -10.2 -5.32599 | TTTACATACATCTTG CCCTAGGA CGTCGT TCCTAGGG TTTTTATCTTTTATA ribD 1017795 - 1018871 + | Riboflavin-specific pyrimidine reductase/deaminase ribE 1018868 - 1019515 + | Riboflavin synthase alpha chain ribA 1019512 - 1020714 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase and GTP cyclohydrolase II ribH 1020727 - 1021191 + | Riboflavin synthase beta-chain ribT 1021274 - 1021618 + | Riboflavin biosynthesis protein ribT, acetyltransferase GNAT-family TERM 1574 1021638 - 1021617 - T 73 -10.2 -2.82471 | opp_overlap 1021617, overlap 1021616 1021619 ATAAATGCGAACAAT GACAGGGA TCAACG TCCCTGTC TTTTTTGCTTTTGTC TERM 1575 1021617 - 1021638 + T 100 -10.9 -5.50313 | opp_overlap 1021617 1021616 1021619 ATAAATGCGAACAAT GACAGGGAT CAAC GTCCCTGTC TTTTTTGCTTTTGTC Aflv_1020 1022152 - 1021625 - | Metal-dependent hydrolase, possible protease TERM 1576 1022715 - 1022695 - gH 71 -4 -4.76171 | GAAAAAATTACAAAA GCCACTTC ATACG AAAGTAGC ACGTCAAGAAATTCC Aflv_1021 1022153 - 1022941 + | Segregation and condensation protein A Aflv_1022 1022877 - 1023515 + | Segregation and condensation protein B Aflv_1023 1023533 - 1023805 + | Predicted membrane protein TERM 1577 1023807 - 1023826 + F 100 -7.1 -5.93252 | opp_overlap 1023807 TGCCTGGAAAGTAAG CAGGTGC CTTTGT GCGCCTG TTTTTTCTTTTTGAG TERM 1578 1023829 - 1023848 + F 76 -4.4 -5.17576 | overlap 1023827 CTTTGTGCGCCTGTT TTTTCTTT TTGA GAAGAAAA TTTTTTAGATTGCTG TERM 1579 1023994 - 1023940 - f 88 -7.7 -5.03409 | gap 1, opp_overlap 1023944 1023947 1023950 1023963, overlap 1023944 1023950 TGACAAAAAAAAGAA TCA-ATAGTAACATTATTACGTAATT ACGT AATTACGTAATAATGTAATTATGTAA TTGTGAGGAGGATAA TERM 1580 1023944 - 1023989 + F 95 -14.5 -2.96274 | opp_overlap 1023940 1023944 1023950, overlap 1023947 1023950 1023963 AAAAAAAAGAATCAA TAGTAACATTATTACGTAATT ACGT AATTACGTAATAATGTAATTA TGTAATTGTGAGGAG TERM 1581 1023989 - 1023944 - f 93 -12.3 -3.85437 | opp_overlap 1023944 1023947 1023950 1023963, overlap 1023940 1023950 AAAAAAAAGAATCAA TAGTAACATTATTACGTAATT ACGT AATTACGTAATAATGTAATTA TGTAATTGTGAGGAG TERM 1582 1023947 - 1023986 + F 95 -14 -3.62644 | opp_overlap 1023944 1023940 1023950, overlap 1023944 1023950 1023963 AAAAAGAATCAATAG TAACATTATTACGTAATT ACGT AATTACGTAATAATGTAA TTATGTAATTGTGAG TERM 1583 1023983 - 1023950 - f 100 -15.7 -3.4382 | opp_overlap 1023947 1023944 1023950 1023963, overlap 1023944 1023940 AAGAATCAATAGTAA CATTATTACGTAATT ACGT AATTACGTAATAATG TAATTATGTAATTGT TERM 1584 1023950 - 1023983 + F 100 -15.7 -2.9248 | opp_overlap 1023950 1023944 1023940, overlap 1023947 1023944 1023963 AAGAATCAATAGTAA CATTATTACGTAATT ACGT AATTACGTAATAATG TAATTATGTAATTGT TERM 1585 1023963 - 1023994 + F 72 -9 -3.29144 | opp_overlap 1023950 1023944 1023940, overlap 1023950 1023947 1023944 AACATTATTACGTAA TTACGTAATTACGT AATA ATGTAATTATGTAA TTGTGAGGAGGATAA Aflv_1024 1024013 - 1025074 + | Threonine aldolase Aflv_1025 1025064 - 1026266 + | Permease of the major facilitator superfamily TERM 1586 1026750 - 1026777 + G 78 -9.2 -3.60006 | opp_overlap 1026749, overlap 1026751 1026762 ATAGTGGAAGTAATG GCGTGACGATTT GTCA AAATCGTCGCGA TTTAGAACTGTCCTT TERM 1587 1026751 - 1026776 + G 89 -12.7 -2.75521 | opp_overlap 1026749, overlap 1026750 1026762 TAGTGGAAGTAATGG CGTGACGATTT GTCA AAATCGTCGCG ATTTAGAACTGTCCT Aflv_1026 1026263 - 1027492 + | Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Aflv_1027 1027479 - 1028681 + | Predicted carboxylase (ATP-grasp) TERM 1588 1028842 - 1028820 - g 71 -4.8 -4.59773 | TTTCATCGGGAAAAA TGGGGGATGA GAC TCATTTCCCA GTTGCGCGTTTTGAG Aflv_1028 1028693 - 1029814 + | Transcriptional regulator containing HTH domain, ArsR family TERM 1589 1029931 - 1029977 + F 100 -12.7 -4.56802 | gap 1, opp_overlap 1029940, overlap 1029935 1029940 CGCCTGTTCAGACTG TTG-ACAAAATGGTTGTAAGAC AGTT GTTTTACAACCATTTTGTTCCA TTTTGATATTTGTTT TERM 1590 1029935 - 1029972 + F 100 -18.1 -3.41195 | opp_overlap 1029940, overlap 1029931 1029940 TGTTCAGACTGTTGA CAAAATGGTTGTAAGAC AGTT GTTTTACAACCATTTTG TTCCATTTTGATATT TERM 1591 1029940 - 1029967 + F 100 -12.2 -4.77719 | opp_overlap 1029940, overlap 1029935 1029931 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTTTTACAACCA TTTTGTTCCATTTTG TERM 1592 1029967 - 1029940 - f 90 -10 -4.38154 | opp_overlap 1029940 1029935 1029931 AGACTGTTGACAAAA TGGTTGTAAGAC AGTT GTTTTACAACCA TTTTGTTCCATTTTG TERM 1593 1030468 - 1030486 + F 81 -7.5 -4.57837 | opp_overlap 1030458 GCAAATTCAGATTTC CGAAAGA ACCCA TCTTTCG TTTTTGGACGAGTGT TERM 1594 1031458 - 1031432 - f 100 -19.6 -4.39568 | opp_overlap 1031428 1031427 ACCTATATATTAAAA CAGCTTGTCGAC TTT GTCGACAAGCTG ACAGGTGCTTTTATG TERM 1595 1031460 - 1031479 + F 100 -7.1 -5.98675 | overlap 1031428 1031427 TTGTCGACAAGCTGA CAGGTGC TTTTAT GCGCCTG TTTTTTCTTTTTATA Aflv_1029 1031577 - 1031996 + | hypothetical protein Aflv_1030 1032003 - 1032497 + | hypothetical protein TERM 1596 1032498 - 1032518 + F 100 -6.9 -5.8187 | opp_overlap 1032498 1032501 ATTCAATCGCAATAA GAAGCTG CGTGTGT CAGCTTC TTTTTTTGTTGCATA sodF 1032508 - 1033332 + | Superoxide dismutase TERM 1597 1033318 - 1033337 + F 71 -4.2 -4.9218 | opp_overlap 1033313 1033320 TTCATCAAAGCAAAA GGCCGC GTCATGTA GCGGTC TTTTTGTCATACATC TERM 1598 1033785 - 1033795 + G 87 -5.4 -5.52384 | TGTTGGCGGTAGCGT CGAA GGC TTCG TTTTTTTAATGAACA dacB 1033477 - 1034514 + | D-alanyl-D-alanine carboxypeptidase TERM 1599 1034683 - 1034696 + G 81 -5.3 -5.23943 | opp_overlap 1034676 AATGAAAATCGCCGA GCAAT CTGG ATTGC TTTCTTTTTTTGCTC spmA 1034507 - 1035100 + | Spore maturation protein A spmB 1035100 - 1035633 + | Spore maturation protein B TERM 1600 1035628 - 1035657 + F 76 -6.6 -4.42748 | gap 1, opp_overlap 1035635, overlap 1035635 TTATGGATGTTTGGG GAATAAAGCGGTC TTTAT GATCGCTTT-TTC TTATTTTTGAACTCC TERM 1601 1035635 - 1035651 + F 89 -5.8 -5.51353 | opp_overlap 1035635, overlap 1035628 TGTTTGGGGAATAAA GCGGTC TTTAT GATCGC TTTTTCTTATTTTTG rluB 1035683 - 1036450 + | Pseudouridine synthase TERM 1602 1036706 - 1036733 + G 80 -2.6 -5.51165 | opp_overlap 1036709 1036712, overlap 1036709 AACGGCAACAAAATT CAACTATCCGAC TACC GTGGGAAAGGTG TTTTTTTAAACTTTT resA 1036538 - 1037065 + | Thiol-disulfide oxidoreductase resA (cytochrome c biogenesis) TERM 1603 1038068 - 1038036 - g 86 -2.8 -5.86609 | gap 1, overlap 1038038 TTAAAAAAATAAAAA GCTTT-TCGATTCGT GTCA ACGAACCGTTAAAAC ATGATCATTACGCAT TERM 1604 1038164 - 1038146 - g 73 -7.5 -4.12532 | overlap 1038158 CGTTTGACAGATAAA CAAACGA ACAAA TCGTTTG GCACGATTACGATTG resB 1037078 - 1038694 + | ResB protein required for cytochrome c biosynthesis TERM 1605 1039003 - 1038992 - g 73 -5.8 -4.42653 | opp_overlap 1038991 1038987 ATTTTATTTATAAAA CGAG TTTA CTCG GTTTATTCACTTTGC resC 1038706 - 1039881 + | ABC-type transport system involved in cytochrome c biogenesis, permease component TERM 1606 1039884 - 1039904 + F 81 -6.8 -4.77165 | opp_overlap 1039885, overlap 1039885 TGCGGGATCTTAAAA ACGCCTTC ATTGC GAAGGCGC TTTTCTTATGAGAAG TERM 1607 1039903 - 1039885 - f 91 -11 -4.62069 | opp_overlap 1039884 1039885 GCGGGATCTTAAAAA CGCCTTCA TTG CGAAGGCG CTTTTCTTATGAGAA TERM 1608 1039885 - 1039903 + F 79 -10.3 -3.45817 | opp_overlap 1039885, overlap 1039884 GCGGGATCTTAAAAA CGCCTTC ATTGC GAAGGCG CTTTTCTTATGAGAA resD 1039954 - 1040688 + | Transcriptional regulator of redox response ResD (REC-wHTH) resE 1040685 - 1042448 + | Redox sensor histidine kinase ResE TERM 1609 1042511 - 1042501 - f 71 -4 -4.85433 | opp_overlap 1042501 ATAGAAACGTAAAAA TTGT TCG ACAA TTACATATGTCCGTT TERM 1610 1042769 - 1042790 + F 100 -10.9 -5.55769 | overlap 1042759 CTTTTGTTGTTTCCA GCTCATTCC ATTT GGAGTGAGC TTTTTTGTTATAAAG Aflv_1041 1042913 - 1043869 + | ABC-type cobalamin/Fe3+-siderophore transport system, periplasmic component TERM 1611 1043913 - 1043942 + GF 100 -10.2 -4.87592 | gap 1 GTTGCACTATTATTA GGGATATCGATTG GATCA CAATCGAT-TCCC TTTTCTTCTATATGG Aflv_1042 1043835 - 1044881 + | ABC-type cobalamin/Fe3+-siderophore transport system, permease component TERM 1612 1045326 - 1045354 + G 100 -14.6 -3.97307 | AGCGAGCAGCGCTTG CACGCGCGCTTG CGCAA CAACCGCGCGTG TTGTTGTTAGATGAA Aflv_1043 1044878 - 1046329 + | ABC-type cobalamin/Fe3+-siderophore transport system ATPase fused to adenosylcobinamide amidohydrolase Aflv_1044 1046326 - 1047258 + | Cobalamin biosynthesis protein CobD/CbiB cobD 1047233 - 1048282 + | L-threonine-O-3-phosphate decarboxylase CobD cobU 1048270 - 1048836 + | Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase, CobU cobS 1048809 - 1049558 + | Cobalamin-5-phosphate synthase, CobS cobC 1049516 - 1050112 + | Alpha-ribazole phosphatase Aflv_1049 1050292 - 1050492 + | CobU related cobalamine biosynthesis protein Aflv_1050 1050495 - 1051091 + | ATP-binding cobalamin adenosyltransferase Aflv_1051 1051088 - 1051558 + | Uncharacterized membrane protein TERM 1613 1051733 - 1051747 + G 70 -5.8 -4.36914 | opp_overlap 1051733 1051732, overlap 1051726 GGCAACACCAAAAGC TTTTGT TTT ACAAAA TTTTGTGAACGACGA Aflv_1052 1051551 - 1052252 + | ATP-binding domain of ThiL/HypE-like (N-terminal domain) family Aflv_1053 1052242 - 1052496 + | hypothetical protein hisJ 1052477 - 1053289 + | Histidinol phosphate phosphatase serA 1054892 - 1053243 - | Phosphoglycerate dehydrogenase TERM 1614 1053290 - 1053321 + g 100 -14.6 -2.72761 | opp_overlap 1053295, overlap 1053295 GTTCCACTTGGATAA AAAAAGGTTCAGCC GCGC GGCTGAACCTTTTA TACTCTAATCTTTTG TERM 1615 1053295 - 1053316 + g 100 -14.5 -4.52047 | opp_overlap 1053295, overlap 1053290 ACTTGGATAAAAAAA GGTTCAGCC GCGC GGCTGAACC TTTTATACTCTAATC TERM 1616 1053316 - 1053295 - G 100 -14.5 -5.61596 | opp_overlap 1053290 1053295 ACTTGGATAAAAAAA GGTTCAGCC GCGC GGCTGAACC TTTTATACTCTAATC TERM 1617 1053450 - 1053462 + g 74 -7.7 -3.97042 | overlap 1053447 TTGGCGACCAACTTG CATCG TTG CGATG TTTACTTGATGGTCA TERM 1618 1055048 - 1055032 - R 100 -10.1 -5.41787 | GAAAAAAGACAAAAA GCTGGCC AAA AGCCAGC TTAACGCATGAAGTG Aflv_1056 1055564 - 1055067 - | Inorganic pyrophosphatase TERM 1619 1055175 - 1055194 + g 70 -3.5 -4.84353 | opp_overlap 1055176 1055184, overlap 1055176 1055179 1055184 TTCTAGATCTTTATA ACGCTCA AAGAAA TGAGCGA TTTCTTTTAATTTAT TERM 1620 1055639 - 1055678 + r 70 -2.8 -5.11112 | opp_overlap 1055646, overlap 1055641 1055646 ACAATGACTGAACGA AAGAAAAGGGCAAGCTTC GCAC GAAGTTTGCCCTTAGATG TTTTTATTCAAATTT TERM 1621 1055671 - 1055646 - R 100 -11.9 -4.99947 | opp_overlap 1055641 1055639 1055646 CTGAACGAAAGAAAA GGGCAAGCTTC GCAC GAAGTTTGCCC TTAGATGTTTTTATT TERM 1622 1055646 - 1055671 + r 100 -14.1 -3.35342 | opp_overlap 1055646, overlap 1055641 1055639 CTGAACGAAAGAAAA GGGCAAGCTTC GCAC GAAGTTTGCCC TTAGATGTTTTTATT fer 1055930 - 1055682 - | Ferredoxin TERM 1623 1056816 - 1056805 - gH 81 -4.4 -5.2853 | opp_overlap 1056805 GACGGAAAAAGAAAA GGAA AAAT TTCC GCTTCTTTTTTCACT Aflv_1058 1056131 - 1057153 + | hypothetical protein TERM 1624 1058247 - 1058262 + GF 74 -4.7 -4.90381 | opp_overlap 1058247, overlap 1058242 GAAATGGGGTTAACA GACGT GCAACA ACGTC TTTTATTGTATTGGC recQ 1057107 - 1058591 + | Superfamily II DNA helicase Aflv_1060 1058584 - 1059174 + | Predicted metal-dependent membrane protease, CAAX family Aflv_1061 1059167 - 1059688 + | LysM repeat protein TERM 1625 1059943 - 1059923 - g 75 -10.5 -2.75844 | opp_overlap 1059922 1059923, overlap 1059922 1059925 GTTGTTATTCCAAAT CATTCGTCC ACA GAACGAATG GTTGTAGCAGCGATT Aflv_1062 1059743 - 1060189 + | Uncharacterized membrane protein Aflv_1063 1060211 - 1060609 + | Uncharacterized membrane protein Aflv_1064 1060584 - 1061372 + | Calcineurin-like phosphohydrolase TERM 1626 1061651 - 1061635 - g 81 -9.5 -3.85698 | opp_overlap 1061633 TGGCTCGTTGATAAA GTGAATC AAG GATTCAC GATTAGTCAAGCTAT Aflv_1065 1061455 - 1062375 + | Transcriptional regulator containing HTH domain MerR family and cobalamin binding domain TERM 1627 1062417 - 1062388 - f 75 -10.2 -3.23984 | opp_overlap 1062390, overlap 1062377 TAAACTCATTAGTAA TATGACGAACAT TTTTAC ACGTTCGTCATA TGCTAACAGTAAAGT Aflv_1066 1062451 - 1063044 + | Negative regulator of genetic competence, sporulation and motility TERM 1628 1063042 - 1063066 + T 100 -13 -5.05782 | opp_overlap 1063042 TACTTTGTAAAAAAA TAACCTTCGC TTATT GCGAAGGTTA TTTTTTAAAATGGGT TERM 1629 1063066 - 1063042 - T 100 -13 -5.41143 | opp_overlap 1063042 TACTTTGTAAAAAAA TAACCTTCGC TTATT GCGAAGGTTA TTTTTTAAAATGGGT Aflv_1067 1063787 - 1063071 - | N-acetylglucosaminylphosphatidylinositol de-N-acetylase related enzyme, LmbE family TERM 1630 1063200 - 1063223 + g 100 -8.2 -5.71638 | gap 1 TAAATGTTGTGTACG GTGCG-CAAGT AGA GCTTGACGCAC TTTTTTTGCTTCTTC TERM 1631 1063880 - 1063857 - H 87 -6 -5.30199 | AAAAATCAATAAAAA CTTCTTTGCA TATG CGCATAGAAG GTGTATACTATGACA TERM 1632 1064922 - 1064890 - gH 70 -5.5 -4.38313 | overlap 1064891 ACATTAAAGCGAAAA TCGTCGTCGAAGC TGCAAAC GGTCCGACGACGT TAGAAGCGACAGAAA TERM 1633 1064921 - 1064891 - gH 70 -9 -3.21904 | overlap 1064890 CATTAAAGCGAAAAT CGTCGTCGAAGC TGCAAAC GGTCCGACGACG TTAGAAGCGACAGAA gudB 1063926 - 1065206 + | Glutamate dehydrogenase TERM 1634 1065228 - 1065252 + GF 100 -14.5 -5.27477 | opp_overlap 1065228 CATGAATACAAAAAA TCTCCTATCAT TGT ATGATAGGAGA TTTTTTAATTGGAGT TERM 1635 1065252 - 1065228 - gf 100 -14.5 -5.49569 | opp_overlap 1065228 CATGAATACAAAAAA TCTCCTATCAT TGT ATGATAGGAGA TTTTTTAATTGGAGT Aflv_1069 1065160 - 1066257 + | Thioredoxin reductase TERM 1636 1066246 - 1066268 + F 100 -10.6 -6.04419 | opp_overlap 1066246 1066248 AAAAGAGAGAAGAAA GTGTCCGAAT AAA ATTCGGGCGC TTTTTTTATTGTTTT TERM 1637 1066268 - 1066246 - f 77 -6.2 -4.5002 | opp_overlap 1066246, overlap 1066248 AAAAGAGAGAAGAAA GTGTCCGAAT AAA ATTCGGGCGC TTTTTTTATTGTTTT bioD 1066339 - 1067007 + | Dethiobiotin synthetase TERM 1638 1067431 - 1067415 - g 71 -2.3 -5.24003 | opp_overlap 1067415 AATAAAAAGCAAAAA TTTGTTA CTT TAGCAAA TGGTTATCACGGAGA TERM 1639 1067799 - 1067787 - g 74 -6.3 -4.4261 | GGCCGAACAGGAAAA CGATT TGC AATCG AGCATGAAGATGTGC TERM 1640 1068055 - 1068042 - g 75 -2.3 -5.33331 | CAAATACAACAAAAA GCCAC ATTT GTCGC TGAACAGCTTGCATC TERM 1641 1068239 - 1068249 + G 75 -5.4 -4.83169 | opp_overlap 1068228, overlap 1068227 AACACGCCCGCTCGG CGAT GTG ATCG TTTTTATGCCACCGT bioA 1066983 - 1068347 + | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 1642 1068358 - 1068340 - T 100 -11 -5.57729 | opp_overlap 1068340 AAACAACAGAAAAAA GGGGCTAA TTG TCAGCCCC TTATATTTCACCGTA TERM 1643 1068340 - 1068358 + T 77 -8.8 -3.82202 | opp_overlap 1068340 AAACAACAGAAAAAA GGGGCTAA TTG TCAGCCCC TTATATTTCACCGTA ypeB 1069705 - 1068359 - | Sporulation protein YpeB TERM 1644 1069272 - 1069291 + g 78 -2.2 -5.42131 | gap 1, overlap 1069274 1069275 TGGACGTTTCGTAAC TCTTGTTGA ATA TCAGCA-GA TTTTTTGTATAGTTG sleB 1070635 - 1069718 - | Germination-specific spore cortex-lytic enzyme TERM 1645 1070558 - 1070544 - G 70 -2.8 -4.95618 | AAGATGAAAAACAAA CATATG AAC CATTTG CGCATTGTGACTCCT TERM 1646 1070612 - 1070624 + g 71 -4.1 -4.87665 | overlap 1070613 TTTGACGCTATTTTT TGTCA CAA TGACG TTTTTATACATAACA TERM 1647 1070654 - 1070672 + r 77 -10.2 -3.30474 | opp_overlap 1070654 AAAACATAATAAAAA GCCAAGCG TTA CGCCTGGC TTGATGATTGTGGGA TERM 1648 1070672 - 1070654 - R 100 -12.4 -5.35365 | opp_overlap 1070654 AAAACATAATAAAAA GCCAAGCG TTA CGCCTGGC TTGATGATTGTGGGA Aflv_1074 1071336 - 1070662 - | Membrane proteinase PrsW, regulator of anti-sigma factor RsiW Aflv_1075 1071414 - 1072133 + | Predicted glycosyltransferase Aflv_1076 1072166 - 1072366 + | Uncharacterized conserved protein, probably sectered TERM 1649 1072404 - 1072389 - f 83 -9 -4.00486 | opp_overlap 1072389 GGTACAATATAAGAA GCAGGA GCGT TCCTGC TTTTTTGTTGAAAAC TERM 1650 1072389 - 1072404 + F 95 -9 -5.4505 | opp_overlap 1072389 GGTACAATATAAGAA GCAGGA GCGT TCCTGC TTTTTTGTTGAAAAC cmk 1072442 - 1073119 + | Cytidylate kinase Aflv_1078 1073089 - 1073700 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 1651 1073794 - 1073769 - f 72 -8.3 -3.53012 | opp_overlap 1073762 1073760 1073758 TTTCTTTGTGTCAAA TGGACGAGCAA ATTG TTGTTCGCCCA TTGAACATATATTTC TERM 1652 1074348 - 1074325 - g 78 -2.3 -5.42259 | opp_overlap 1074314, overlap 1074326 TGACCGCGAAAAAAA TCGCGTTGT CTTATC ACATCGCGC GGTTGTAGAAGAAGA Aflv_1079 1073825 - 1074985 + | Ribosomal protein S1 TERM 1653 1075170 - 1075144 - g 100 -10.9 -5.27938 | opp_overlap 1075144 ATTTGCAAACAAAAA TCGGCGAACTT TCTTT ACGTTCGCCGA TTTTTATTAATGCGA TERM 1654 1075144 - 1075170 + G 100 -10.9 -5.1356 | opp_overlap 1075144 ATTTGCAAACAAAAA TCGGCGAACTT TCTTT ACGTTCGCCGA TTTTTATTAATGCGA Aflv_1080 1074987 - 1076051 + | Isopentenyl diphosphate isomerase TERM 1655 1076052 - 1076086 + T 82 -10.8 -3.5361 | opp_overlap 1076057, overlap 1076057 AGCCAGCGCCCATGA AAAAAGGTGTCCCG AAAAAAG CGGGGCACCTTTTG TTGTGTAGATCGTTA TERM 1656 1076057 - 1076081 + T 93 -10.7 -4.84914 | opp_overlap 1076057, overlap 1076052 GCGCCCATGAAAAAA GGTGTCCCG AAAAAAG CGGGGCACC TTTTGTTGTGTAGAT TERM 1657 1076081 - 1076057 - T 90 -8.5 -5.14563 | opp_overlap 1076052 1076057 GCGCCCATGAAAAAA GGTGTCCCG AAAAAAG CGGGGCACC TTTTGTTGTGTAGAT Aflv_1081 1076236 - 1076099 - | hypothetical protein TERM 1658 1076673 - 1076689 + G 73 -7.3 -4.08221 | overlap 1076684 TCGTTTGCGTTATAT CGGTCAT TTT ATGATCG TTTACTTGTGTTAAC Aflv_1082 1076283 - 1076903 + | Uncharacterized membrane protein TERM 1659 1076984 - 1076971 - g 72 -8.1 -3.78022 | TCTATATTTATTAAA GACGG ACTA CCGTC AATATCCAACATATT TERM 1660 1077749 - 1077739 - g 74 -6.8 -4.40358 | ACCGACGTTAGAAAA TGCG ATT CGCA TGCCGACGAAGTCTG seaA 1076900 - 1077796 + | Sporulation protein involved in spore envelope assembly Aflv_1084 1077793 - 1077975 + | hypothetical protein TERM 1661 1078001 - 1078019 + F 81 -6.6 -4.81306 | opp_overlap 1078001, overlap 1078003 AAAATGGGAAAGCTA GCCCCTTC AGT GGAAGGGC TTCTTTTTTGTTCGG TERM 1662 1078003 - 1078018 + F 74 -9 -3.47157 | opp_overlap 1078001, overlap 1078001 AATGGGAAAGCTAGC CCCTTC AGTG GAAGGG CTTCTTTTTTGTTCG TERM 1663 1078472 - 1078495 + G 88 -11 -3.85698 | ATGACTTTTATACGC TCGGATTCGG AGAG CCGATTCCGA TTTCTGGCACGCACG Aflv_1085 1078027 - 1079376 + | Predicted GTPase gpsA 1079388 - 1080407 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 1664 1080512 - 1080543 + F 100 -9.6 -5.36441 | gap 1, overlap 1080513 CATGTTTAGTCATCG TCTGAAGTAAAGACG CCC CG-CTTTACTTCAGC TTTTTTATGTGACGA TERM 1665 1080513 - 1080542 + F 100 -13.1 -3.81141 | gap 1, overlap 1080512 ATGTTTAGTCATCGT CTGAAGTAAAGACG CCC CG-CTTTACTTCAG CTTTTTTATGTGACG Aflv_1087 1080586 - 1080789 + | hypothetical protein Aflv_1088 1080805 - 1081527 + | Uncharacterized conserved secretedprotein TERM 1666 1081535 - 1081569 + F 100 -9.5 -5.55664 | opp_overlap 1081532 TGAAATAAGTCATGA TCCCTTCTCTAAG CAAATACAT TTTAGAGAAGGGA TTTTTTTAGTCATAA spoIVA 1081604 - 1083130 + | Stage IV sporulation protein A TERM 1667 1083134 - 1083149 + F 93 -6.8 -5.37593 | opp_overlap 1083134 ATCATTTTATAAAAA GACTCC GTTT GGGGTC TTTTTTGCTTTGAAA TERM 1668 1083149 - 1083134 - f 74 -4.6 -4.86001 | opp_overlap 1083134 ATCATTTTATAAAAA GACTCC GTTT GGGGTC TTTTTTGCTTTGAAA hbs 1083357 - 1083662 + | DNA-binding protein HU-alpha (histone-like protein) TERM 1669 1083679 - 1083709 + F 89 -6.9 -5.32608 | gap 1, opp_overlap 1083682, overlap 1083682 AAATTACATACAGCC AAAGAGGTAGC-CG GTTG CGAGCTGCCTCTTC TTTTTTGCCTTTTTT TERM 1670 1083682 - 1083706 + F 88 -8.6 -4.68528 | gap 1, opp_overlap 1083682, overlap 1083679 TTACATACAGCCAAA GAGGTAGC-CG GTTG CGAGCTGCCTC TTCTTTTTTGCCTTT mtrA 1083734 - 1084336 + | GTP cyclohydrolase I mtrB 1084347 - 1084574 + | Tryptophan operon RNA-binding attenuation protein (TRAP) Aflv_1093 1084635 - 1085282 + | Heptaprenyl diphosphate synthase component I menH 1085307 - 1086020 + | Methylase involved in ubiquinone/menaquinone biosynthesis TERM 1671 1086557 - 1086579 + G 76 -10.6 -2.93723 | overlap 1086553 ACGGCGTTGCTCATT GCGGCAAGTT GTC AACTTGGCGC TGTCGTTGCTGGGGC hepT 1086032 - 1086994 + | Geranylgeranyl pyrophosphate synthase TERM 1672 1087478 - 1087468 - g 87 -8.2 -4.44046 | overlap 1087469 CTGACTCGAAAGAAA GCGC GGC GCGC GAAATTCAACTATTT ndk 1087104 - 1087550 + | Nucleoside diphosphate kinase TERM 1673 1087551 - 1087576 + G 100 -6.9 -6.04953 | opp_overlap 1087555 1087557, overlap 1087555 GAGTGGGTATATTAA AAAAGGTAGGC ACAT GCCTATCTTTA TTTTTTTATTTCTGT TERM 1674 1087572 - 1087555 - g 81 -5.5 -5.21709 | opp_overlap 1087551 1087555, overlap 1087557 GGGTATATTAAAAAA GGTAGGC ACAT GCCTATC TTTATTTTTTTATTT TERM 1675 1087555 - 1087572 + G 100 -7.7 -5.36181 | opp_overlap 1087555 1087557, overlap 1087551 GGGTATATTAAAAAA GGTAGGC ACAT GCCTATC TTTATTTTTTTATTT TERM 1676 1088316 - 1088330 + G 85 -4.2 -5.53991 | AGTTTAATCGCGCTC TTCGCC CTG GGGGAA TTTTTTTCGTCGGTA cheR 1087538 - 1088419 + | Methyl-accepting chemotaxis protein (MCP) methyltransferase TERM 1677 1088422 - 1088439 + GF 89 -10.5 -4.06491 | TCGAAAAATGTAGTT GCGGCCG AATT CGGTCGC TTTCTGTGCAATTAA Aflv_1098 1088420 - 1089697 + | Chorismate synthase TERM 1678 1089768 - 1089793 + GF 79 -9.1 -3.88787 | opp_overlap 1089773, overlap 1089770 1089771 AAATGAAGTGCTGCA TATGATCGATC GCGT GATCGATCGTG TTTGTCCACATGTAA TERM 1679 1089770 - 1089791 + GF 77 -9.5 -3.53174 | opp_overlap 1089773, overlap 1089768 1089771 ATGAAGTGCTGCATA TGATCGATC GCGT GATCGATCG TGTTTGTCCACATGT TERM 1680 1089771 - 1089790 + GF 76 -10.8 -2.71422 | opp_overlap 1089773, overlap 1089770 1089768 TGAAGTGCTGCATAT GATCGATC GCGT GATCGATC GTGTTTGTCCACATG aroB 1089595 - 1090833 + | 3-dehydroquinate synthetase aroH 1090742 - 1091176 + | Chorismate mutase TERM 1681 1091263 - 1091287 + F 100 -13 -5.65927 | CATTAGGATACGTAC GCCTAAAGAC TGCCC GTCTTTAGGC TTTTTTGTTTCCCTC TERM 1682 1091837 - 1091826 - gf 78 -2.2 -5.48825 | GATCATGTAAAAAAA GAGC TATT ACTC ATTCATTACGTTCGT TERM 1683 1092794 - 1092779 - gf 76 -7.6 -4.23391 | opp_overlap 1092778 1092779, overlap 1092775 1092772 GAAAGAAACGAGAAA TAAGGC GAGC GCCTTA ATTCATGCCATTCAG trpE 1091292 - 1092851 + | Anthranilate synthase component I trpD 1092799 - 1093854 + | Anthranilate phosphoribosyltransferase TERM 1684 1094064 - 1094084 + G 73 -7.5 -4.09685 | GCGCATACGAACAGG CAGGTGCGG ATG CCGTGTCTG TTTTAACAGATGAAC TERM 1685 1094249 - 1094259 + G 75 -3.2 -5.09225 | CTCATTGGTGAAGCG CTTG ATC CGAG TTTTTTGCATGAACT trpC 1093847 - 1094608 + | Indole-3-glycerol phosphate synthase TERM 1686 1094734 - 1094713 - g 70 -5.9 -4.33808 | overlap 1094728 GAAAGCAAGCGAAAA GTCGAAC CAGAAAAT GTTCGAC GATGGCTATCCGGCG trpF 1094605 - 1095240 + | Phosphoribosylanthranilate isomerase trpB 1095234 - 1096430 + | Tryptophan synthase beta chain TERM 1687 1097126 - 1097154 + GF 73 -5.3 -4.61633 | gap 1, opp_overlap 1097125 1097122 GACGAATTGAACGAT GCGCATACGCGC TCAAAT GCGCTTAT-CGC TTTTTCCCAATATGT trpA 1096427 - 1097266 + | Tryptophan synthase alpha chain TERM 1688 1098053 - 1098041 - gf 91 -4.9 -5.61596 | ATGTGCACAAAAAAA TAAAC AAG GTTTA GACCAATTTTATGCA hisC 1097208 - 1098323 + | Histidinol-phosphate aminotransferase tyrA 1098305 - 1099408 + | Prephenate dehydrogenase TERM 1689 1099460 - 1099440 - g 75 -5.3 -4.89063 | overlap 1099442 GGAGTTAAAAACAAA TATCCACGC ATT GCGGGGAGA AATTGCTGTTCCGGG TERM 1690 1099458 - 1099442 - g 74 -7.9 -4.05491 | overlap 1099440 AGTTAAAAACAAATA TCCACGC ATT GCGGGGA GAAATTGCTGTTCCG aroE 1099423 - 1100709 + | 5-enolpyruvylshikimate-3-phosphate synthase TERM 1691 1100702 - 1100729 + F 87 -4.9 -5.49729 | opp_overlap 1100705, overlap 1100705 ATCTTCGCATGTTAC AAAGCTGATTC CATGAC GGATCAGCTTC TTTTTTTGCATGCTT TERM 1692 1100705 - 1100726 + F 81 -6.6 -4.8236 | opp_overlap 1100705, overlap 1100702 TTCGCATGTTACAAA GCTGATTC CATGAC GGATCAGC TTCTTTTTTTGCATG Aflv_1110 1100769 - 1102052 + | TPR repeat protein TERM 1693 1102314 - 1102302 - g 70 -5.5 -4.49389 | overlap 1102303 ATTTTATAAGCAAAA CGTCG TTA CGACA GATGCAGAAAAATCG Aflv_1111 1102045 - 1102608 + | hypothetical protein TERM 1694 1102634 - 1102591 - f 80 -10.5 -3.68073 | gap 1, opp_overlap 1102597, overlap 1102597 GAGCTGACCGAACAA TTAAAAGCGTTGCGTTAACC TCGGT GGTTT-CGCAACGCTTTTTA CGATGTGTATATTTG TERM 1695 1102628 - 1102597 - f 91 -9.5 -4.56736 | gap 1, opp_overlap 1102597, overlap 1102591 ACCGAACAATTAAAA GCGTTGCGTTAACC TCGGT GGTTT-CGCAACGC TTTTTACGATGTGTA TERM 1696 1102597 - 1102628 + F 91 -9.5 -4.65838 | gap 1, opp_overlap 1102591 1102597 ACCGAACAATTAAAA GCGTTGCGTTAACC TCGGT GGTTT-CGCAACGC TTTTTACGATGTGTA Aflv_1112 1102715 - 1103149 + | hypothetical protein TERM 1697 1103514 - 1103498 - g 77 -6.5 -4.74084 | AAAGTAAAAGTAAAA GACGCGT GGT ACGAGTC AGAAGAGCCAAGATC qcrA 1103246 - 1103788 + | Menaquinol:cytochrome c oxidoreductase (iron-sulfur subunit) qcrB 1103792 - 1104466 + | Menaquinol:cytochrome c oxidoreductase (cytochrome b subunit) qcrC 1104492 - 1105259 + | Menaquinol-cytochrome c reductase cytochrome b/c subunit TERM 1698 1105289 - 1105269 - f 100 -14.1 -4.16921 | opp_overlap 1105269 GAATAATTTGTAAAA GCTGACTGA ACA TCAGTCAGC TTTTTTGTACATATG TERM 1699 1105269 - 1105289 + F 100 -14.1 -5.29782 | opp_overlap 1105269 GAATAATTTGTAAAA GCTGACTGA ACA TCAGTCAGC TTTTTTGTACATATG Aflv_1116 1105302 - 1105886 + | Predicted membrane protein Aflv_1117 1105953 - 1106726 + | hypothetical protein TERM 1700 1106723 - 1106752 + T 70 -9.4 -2.62735 | opp_overlap 1106724 1106729, overlap 1106729 1106745 GGTGAGAGATAAACA ATAAAAGCGTCC ATCGTC GGACGCTTTTAC TCATGTAACGGCTGT TERM 1701 1106751 - 1106724 - T 100 -13.6 -4.18674 | opp_overlap 1106723 1106729 1106745, overlap 1106729 GTGAGAGATAAACAA TAAAAGCGTCCA TCGT CGGACGCTTTTA CTCATGTAACGGCTG TERM 1702 1106729 - 1106746 + T 85 -8.4 -4.33274 | opp_overlap 1106724 1106729, overlap 1106723 1106745 AGATAAACAATAAAA GCGTCC ATCGTC GGACGC TTTTACTCATGTAAC TERM 1703 1106746 - 1106729 - T 90 -9.1 -5.06472 | opp_overlap 1106729 1106723 1106745, overlap 1106724 AGATAAACAATAAAA GCGTCCA TCGT CGGACGC TTTTACTCATGTAAC Aflv_1118 1107618 - 1106749 - | Uncharacterized membrane protein TERM 1704 1107687 - 1107675 - H 71 -4.9 -4.59109 | CATACCCGTCAAAAA CATTT GTC AAATG CCCCACTTTTAGCTA Aflv_1119 1107718 - 1108059 + | Predicted pyrophosphatase TERM 1705 1108428 - 1108408 - gf 91 -3.9 -5.80817 | opp_overlap 1108407 1108420 1108422 CGGAAGAGAAAAAAA TTGGTGCGA TTA TTGCGCCAA ACTTTGCGATTGGTG dapB 1108032 - 1108850 + | Dihydrodipicolinate reductase mgsA 1108843 - 1109271 + | Methylglyoxal synthase Aflv_1122 1109238 - 1109963 + | N-acetylglucosaminylphosphatidylinositol de-N-acetylase related enzyme, LmbE family TERM 1706 1110298 - 1110278 - g 73 -8.4 -3.64703 | opp_overlap 1110282, overlap 1110282 GCCTTTTTAGCGAAA CAAATGGT TGGTG ACCATTTG AAAATCGTGACGACG Aflv_1123 1109960 - 1111093 + | Glycosyltransferase cca 1111090 - 1112283 + | tRNA nucleotidyltransferase TERM 1707 1112355 - 1112329 - gf 82 -5.8 -5.00616 | opp_overlap 1112336, overlap 1112332 TGTCCGGGCAAAAAA TTAGCGAGCAGC TCG GGTGCTCACGAA CAGCTATTTGGAAAC birA 1112244 - 1113233 + | Biotin operon repressor containing HTH and biotin-(acetyl-CoA carboxylase) ligase domains TERM 1708 1113383 - 1113413 + F 85 -4.1 -5.68039 | opp_overlap 1113382 1113383, overlap 1113384 GGAGTAGAACAAAGG TCCTTCTTTCT CATTTTGGC AGAAAGAAGGC TTTTTTTATCCATTT TERM 1709 1113384 - 1113412 + F 73 -7.6 -3.98383 | opp_overlap 1113382 1113383, overlap 1113383 GAGTAGAACAAAGGT CCTTCTTTCT CATTTTGGC AGAAAGAAGG CTTTTTTTATCCATT panB 1113398 - 1114285 + | Ketopantoate hydroxymethyltransferase TERM 1710 1114374 - 1114355 - gf 73 -2.1 -5.18355 | gap 1, overlap 1114358 GCCAAAAAGGAAAAA CGATCGGC TTTGT GCCAA-CG ATGGGATACTTGCAT panC 1114258 - 1115136 + | Panthothenate synthetase panD 1115149 - 1115532 + | Aspartate 1-decarboxylase TERM 1711 1115509 - 1115550 + F 100 -11.6 -5.38054 | gap 2, opp_overlap 1115511 GAACTCATTGTCCAA GAGCCGGC--GGCGACCGTT TTAT AACGGGCGCCATGCCGCCTC TTTTTATTTGTCACA TERM 1712 1115658 - 1115644 - g 70 -2.8 -5.01732 | AATGCCCCGAAAAAA GAAGAT CGC ATCATC CAAATCGGTTTTGTC TERM 1713 1116955 - 1116966 + G 73 -5.8 -4.56597 | opp_overlap 1116954 1116955 CATCATTTAGAAGAT GTGG CTGC CCAC TTTTTCGGAAGGCAC TERM 1714 1117493 - 1117505 + G 77 -4.8 -5.05505 | CTTCGGCTACGTTAA CGAC AAATG GTCG TTTTTCATTTATCAT dnaQ 1115587 - 1118229 + | DNA polymerase III, epsilon subunit and Rad3-related DNA helicase Aflv_1130 1118264 - 1119022 + | Predicted hydrolase (metallo-beta-lactamase superfamily) TERM 1715 1119043 - 1119027 - f 93 -10.1 -5.07567 | TGACATTTTAAAAAA GGGCCAA CGT TCGGCCC GCGGTGTGTACGTTA Aflv_1131 1119185 - 1119376 + | hypothetical protein Aflv_1132 1119383 - 1119871 + | hypothetical protein aspB 1119868 - 1121055 + | Aspartate aminotransferase TERM 1716 1121050 - 1121070 + F 93 -9.7 -4.99568 | AATGAAAAAACGCGT GGCTAGTCG ATA TGGCTAGCC TTTTCTTTCATCTTG TERM 1717 1121931 - 1121908 - gf 71 -6 -4.2679 | CAATCGGTATTAAAA CATTGTCAGC TCGA GCTGAAAACG CTCGGACGCGATACG asnS 1121083 - 1122447 + | Asparaginyl-tRNA synthetase TERM 1718 1122477 - 1122456 - gTf 84 -10.1 -3.86944 | opp_overlap 1122456 CCCATAATGATGAAA TCCCCCGTG CTCA CATGGGGGA TTTGTTTTATGATAT TERM 1719 1122456 - 1122477 + GTF 100 -12.3 -4.81357 | opp_overlap 1122456 CCCATAATGATGAAA TCCCCCGTG CTCA CATGGGGGA TTTGTTTTATGATAT dnaD 1122371 - 1123189 + | Initiation of chromosome replication (DNA synthesis) TERM 1720 1123724 - 1123743 + GT 74 -4.2 -4.96028 | opp_overlap 1123723 1123722, overlap 1123726 TCCGAAAGAAGAATG GTCGGTGA CCCA TCATCGCC TTATTTTTTTTGGAC Aflv_1137 1123916 - 1123779 - | hypothetical protein nth 1123176 - 1123853 + | Predicted EndoIII-related endonuclease Aflv_1138 1123935 - 1124345 + | hypothetical protein TERM 1721 1124333 - 1124366 + T 88 -11.2 -3.58932 | opp_overlap 1124338, overlap 1124338 ACAAATGGCTCAACA AAAAAGAGACTGAG CGCGTC CTCAGTCTCTTTTC TTACTTATTGATTAT TERM 1722 1124361 - 1124338 - T 100 -11.1 -5.4505 | opp_overlap 1124338 1124333 TGGCTCAACAAAAAA GAGACTGAG CGCGTC CTCAGTCTC TTTTCTTACTTATTG TERM 1723 1124338 - 1124361 + T 93 -11.1 -4.84262 | opp_overlap 1124338, overlap 1124333 TGGCTCAACAAAAAA GAGACTGAG CGCGTC CTCAGTCTC TTTTCTTACTTATTG ponA 1126965 - 1124371 - | Membrane carboxypeptidase (penicillin-binding protein) TERM 1724 1126476 - 1126515 + g 75 -8.8 -3.59247 | GCCATAATTCTTGCA CTTTCCGTTTTAACGTTT TTTC AGGTGTTAAAAAGGAAAG TTTGACAACTTGTTG recU 1127634 - 1126981 - | Penicillin-binding protein-related factor A, putative recombinase TERM 1725 1127197 - 1127175 - G 72 -6.2 -4.35524 | overlap 1127176 TCGTGAAACGCAAAA TCACGAAGCA AAT CGCTCCGTGG GCTAACACTTGTTTC TERM 1726 1127196 - 1127176 - G 74 -9.7 -3.20832 | overlap 1127175 CGTGAAACGCAAAAT CACGAAGCA AAT CGCTCCGTG GGCTAACACTTGTTT TERM 1727 1127322 - 1127334 + g 80 -9.1 -3.9392 | opp_overlap 1127321 1127322 ATATGCCATTATAAT CCGTC GTG GACGG TTGTTTAAAGTACGC TERM 1728 1128854 - 1128837 - g 74 -4.9 -4.7497 | opp_overlap 1128837 TGCATGTACTAAAAA TGAAATC AGCC GATTCCA TTGTACTTGTCATTA Aflv_1141 1127747 - 1129492 + | Predicted sulfate permease MFS superfamily Aflv_1142 1129489 - 1129833 + | Transcriptional regulator, ArsR family TERM 1729 1129844 - 1129816 - f 95 -11.8 -4.28323 | opp_overlap 1129816 ATGAATGAAGAGAAA GAGACAGGGG GAGTGTAAT CCCCTGTCTC TTTTATGTAGAAGGA TERM 1730 1129816 - 1129844 + F 100 -12.5 -4.52589 | opp_overlap 1129816 ATGAATGAAGAGAAA GAGACAGGGGG AGTGTAA TCCCCTGTCTC TTTTATGTAGAAGGA TERM 1731 1129887 - 1129915 + F 75 -2.9 -5.24003 | TCTAGCTTTTTGTCG CCGAAGCCTGTCG TTT CTTCTTGCTTCGG TTTTTGCTTTTTCTT Aflv_1143 1130088 - 1130333 + | hypothetical protein TERM 1732 1130358 - 1130336 - T 82 -7.7 -4.52589 | opp_overlap 1130338, overlap 1130338 TCCGGCCATATAAAA GAGGTGGCA AATTG TGCCACCTT TATTCTTTTACACGC TERM 1733 1130356 - 1130338 - T 84 -10.3 -3.87627 | opp_overlap 1130338, overlap 1130336 CGGCCATATAAAAGA GGTGGCA AATTG TGCCACC TTTATTCTTTTACAC TERM 1734 1130338 - 1130356 + T 93 -10.3 -4.67697 | opp_overlap 1130336 1130338 CGGCCATATAAAAGA GGTGGCA AATTG TGCCACC TTTATTCTTTTACAC Aflv_1144 1130525 - 1130358 - | hypothetical protein Aflv_1145 1130798 - 1130586 - | hypothetical protein Aflv_1146 1130952 - 1131287 + | Uncharacterized spore coat related protein TERM 1735 1131268 - 1131295 + T 100 -10 -5.52096 | opp_overlap 1131261 1131268 TCGTAAAAGGATTAA CGCAAACGTT TAAATTGT AACGTTTGCG TTTTTTCTTGCATTT TERM 1736 1131295 - 1131268 - T 77 -10 -3.37533 | opp_overlap 1131268, overlap 1131261 TCGTAAAAGGATTAA CGCAAACGTT TAAATTGT AACGTTTGCG TTTTTTCTTGCATTT TERM 1737 1131306 - 1131328 + T 81 -5.7 -5.03994 | TTGCGTTTTTTCTTG CATTTATTC GATTG GGATAAATG TTTTTCTCTGTGGGA Aflv_1147 1131740 - 1131309 - | Molecular chaperone (small heat shock protein) Aflv_1148 1132011 - 1131808 - | hypothetical protein TERM 1738 1131956 - 1131968 + g 91 -7.7 -4.82901 | TGTAAACCACGTTCA GCCAT CAA ATGGC TTTTTGTGCAAAACA TERM 1739 1132047 - 1132096 + H 100 -11 -5.61881 | gap 1, opp_overlap 1132045 1132047 1132065 GTCAAGAGACGAAGA GAGACC-ATACATGCATAATAAG CAAAA CTTATTGTGCTTGTTTTGGTCTC TTTTTGTTTTTACAA TERM 1740 1132096 - 1132047 - H 73 -9.5 -3.25475 | gap 1, opp_overlap 1132047, overlap 1132045 1132065 GTCAAGAGACGAAGA GAGACC-ATACATGCATAATAAGC AAA ACTTATTGTGCTTGTTTTGGTCTC TTTTTGTTTTTACAA TERM 1741 1132913 - 1132928 + G 73 -9 -3.44672 | opp_overlap 1132909, overlap 1132911 1132909 GACCAAGCACATTTT CCGCTT AAGC AAGCGG TATATTTTGATACGC glpD 1132100 - 1133767 + | Glycerol-3-phosphate dehydrogenase TERM 1742 1133773 - 1133788 + T 100 -11.8 -4.89838 | TGAAGCGTAACGTTA GGCGGG ACAT CCCGCC TTTTCTATTTCTTCC Aflv_1150 1134666 - 1133770 - | hypothetical protein TERM 1743 1134631 - 1134612 - GT 100 -10.7 -5.4477 | AAAGTTTCAAAAAAA CACCGGC GATCGT GCCGGTG TCAATGAAATTGTAC Aflv_1151 1135057 - 1134632 - | Molecular chaperone (small heat shock protein) TERM 1744 1135146 - 1135125 - R 100 -8.8 -5.71712 | opp_overlap 1135125 TGTTATACAAAAAAA CTTGCCTT AGCGGG AAGGCAAG TTTTCAAGCTGTTGT TERM 1745 1135125 - 1135146 + r 82 -8.8 -4.14874 | opp_overlap 1135125 TGTTATACAAAAAAA CTTGCCTT AGCGGG AAGGCAAG TTTTCAAGCTGTTGT Aflv_1152 1135391 - 1135131 - | hypothetical protein Aflv_1153 1136365 - 1135403 - | hypothetical protein TERM 1746 1136233 - 1136245 + g 100 -7.7 -5.54264 | CAACACGTGTCAATT CAAGC GGT GCTTG TTTTTTTGGCTCTTT Aflv_1154 1137502 - 1136411 - | Signal transduction diguanylate cyclase TERM 1747 1137548 - 1137570 + r 89 -9.2 -4.66163 | opp_overlap 1137548 GCGAACGAAAAAAAA TGTTGCGG ACAAACG CCGCAACA TTTTTAAATCGAAAT TERM 1748 1137570 - 1137548 - R 100 -9.2 -5.95166 | opp_overlap 1137548 GCGAACGAAAAAAAA TGTTGCGG ACAAACG CCGCAACA TTTTTAAATCGAAAT ampS 1138806 - 1137574 - | Leucyl aminopeptidase (aminopeptidase T) TERM 1749 1138658 - 1138674 + g 73 -3.5 -5.07107 | ACATGCACATGTTTT GCGCCCG CTT CGTACGC TTTTTTAGCAATTTC Aflv_1156 1138924 - 1139355 + | hypothetical protein TERM 1750 1139834 - 1139817 - g 71 -6.9 -4.08144 | TTTACGAATGAGAAA GGGGAAC ATTT GCCCCCC ATACCGTCTTCTTTG Aflv_1157 1139352 - 1140473 + | Glycerate kinase TERM 1751 1140462 - 1140483 + F 90 -8.8 -5.03227 | GCCCGTACGCTCAAG CGGTTTTC CTAGTC GAAAACCG TTTTATTTATGCTCT TERM 1752 1140968 - 1140935 - g 71 -9.7 -2.62184 | opp_overlap 1140933 CGTTCGCGTATATCA TTGCGTTACTATATG TCAT CATGCAGCAACGCAA AGTAGTTGTCGTATG TERM 1753 1142852 - 1142873 + G 71 -10.1 -2.64651 | overlap 1142849 1142849 TTCAAGGATACGTTC TCGGCAAGC CTGT GCCTGCCGA TCAATTTGCAAAATT Aflv_1158 1140622 - 1142919 + | Multidomain signal transduction protein (GGDEF and EAL domains) TERM 1754 1142901 - 1142925 + F 100 -7.9 -5.61596 | opp_overlap 1142901 ATTATATATCGAAAA CCAACTTCCGT ACG ATTGAAGTTGG TTTTTTTATAAAAAT TERM 1755 1142952 - 1142940 - f 74 -4.9 -4.82901 | GTTTTTTTATAAAAA TCATT GAC AATGA TAATCAATTCATGTA TERM 1756 1143622 - 1143649 + GF 72 -9.2 -3.09028 | overlap 1143621 CGCACGATCATTATG GTGTTGCATGAT TTAA ATCAAGCAGCAC GTTTTGCAGATTATA fhuC 1143037 - 1143897 + | Ferrichrome ABC transporter (ATP-binding protein) TERM 1757 1144507 - 1144497 - gf 72 -3.2 -5.05577 | AAATGAAATTAAAAA TGCC GAA AGCA GTTGAAGAACATGCA fhuD 1143824 - 1144765 + | Ferrichrome ABC transporter (ferrichrome-binding protein) TERM 1758 1144809 - 1144766 - g 86 -12.1 -3.16564 | gap 1, opp_overlap 1144773 1144777, overlap 1144772 TTTTTAGGTGAGTAA CATAAAGGAAAGAGGAGTTC GTCGT GAATTCCTCTTTC-TTTATG CAAATAGAAAAGAGA TERM 1759 1144804 - 1144772 - g 76 -7.8 -4.23674 | opp_overlap 1144773 1144777, overlap 1144766 GGTGAGTAACATAAA GGAAAGAGGAGTTC GTCGT GAATTCCTCTTTCT TTATGCAAATAGAAA TERM 1760 1144773 - 1144803 + G 100 -14.2 -3.87815 | opp_overlap 1144772 1144766, overlap 1144777 GTGAGTAACATAAAG GAAAGAGGAGTTCG TCG TGAATTCCTCTTTC TTTATGCAAATAGAA TERM 1761 1144777 - 1144799 + G 95 -9.2 -4.55697 | opp_overlap 1144772 1144766, overlap 1144773 GTAACATAAAGGAAA GAGGAGTTCG TCG TGAATTCCTC TTTCTTTATGCAAAT TERM 1762 1144981 - 1144963 - g 71 -2.4 -5.22481 | CAGAAACAAACAAAA TCGCGA CGATGAT TCACGA AGTGCGTTTGCCGCG TERM 1763 1145412 - 1145425 + G 76 -6.7 -4.57569 | CCTTTTATTTGTTTT GCGAT GCTT ATCGC TTTTTGGCAAAGTCG fhuB 1144758 - 1145801 + | Ferrichrome ABC transporter (permease) TERM 1764 1146552 - 1146566 + G 70 -7.8 -3.64703 | overlap 1146553 TGACGGCAGTGGCGC TTGCCG CAT CGGCAG TTTCAGTCACGGGCG fhuG 1145798 - 1146805 + | Ferrichrome ABC transporter (permease) TERM 1765 1147873 - 1147851 - g 71 -8.4 -3.44146 | opp_overlap 1147850 GTTGGCGATAACGAA CGAGCGCT TGCGTTT AGCGCCCG CTTGCGTGAACGTGG kbl 1146867 - 1148039 + | 7-keto-8-aminopelargonate synthetase TERM 1766 1148146 - 1148157 + G 71 -3 -5.00616 | ATGGGAGCATATGCA TGAT GTCA ATCA TTTTTTAGCAAAAGC Aflv_1164 1148036 - 1148716 + | Carboxylesterase bioH (Biotin synthesis protein bioH) Aflv_1165 1148697 - 1149476 + | SAM-dependent methyltransferase TERM 1767 1149461 - 1149487 + T 79 -5.3 -5.08824 | gap 1, overlap 1149464 ATACCATTGCATTTT TATTGACATCAC TTAG GTGGTGTC-ATA TTTTTTCCGTAAAAA TERM 1768 1149464 - 1149485 + T 89 -9.5 -4.17608 | overlap 1149461 CCATTGCATTTTTAT TGACATCAC TTAG GTGGTGTCA TATTTTTTCCGTAAA Aflv_1166 1150308 - 1149469 - | S-adenosylmethionine decarboxylase TERM 1769 1149975 - 1149951 - G 75 -8.5 -3.89822 | opp_overlap 1149951 1149954, overlap 1149954 TATCGAGCGCACAAA CGACCGCTTGT GGT ACAGGCGGTTG TTCTTTTGGCACTTC TERM 1770 1149951 - 1149975 + g 100 -12.9 -4.19577 | opp_overlap 1149951 1149954, overlap 1149954 TATCGAGCGCACAAA CGACCGCTTGT GGT ACAGGCGGTTG TTCTTTTGGCACTTC TERM 1771 1149954 - 1149972 + g 93 -11 -4.20868 | opp_overlap 1149951 1149954, overlap 1149951 CGAGCGCACAAACGA CCGCTTGT GGT ACAGGCGG TTGTTCTTTTGGCAC Aflv_1167 1150352 - 1152178 + | Kef-type K+ transport system (membrane and NAD-binding components) TERM 1772 1152182 - 1152200 + F 88 -8.1 -5.15526 | opp_overlap 1152182, overlap 1152187 GGGAAATATTGAAAA CCGAGGG AGAAA TCCTCGG TTTTTCCTTTTCTGT TERM 1773 1152200 - 1152182 - f 78 -7.4 -4.323 | opp_overlap 1152182 1152187 GGGAAATATTGAAAA CCGAGG GAGAAAT CCTCGG TTTTTCCTTTTCTGT TERM 1774 1152187 - 1152207 + F 79 -6.9 -4.59027 | opp_overlap 1152182, overlap 1152182 ATATTGAAAACCGAG GGAGAAATC CTC GGTTTTTCC TTTTCTGTGATGATT Aflv_1168 1152290 - 1152616 + | hypothetical protein TERM 1775 1152753 - 1152735 - g 86 -8.8 -4.32067 | overlap 1152732 GAGGTTATAAAAGAA CCGCTCCA ACG TGCAGCGG AGCGGGGAGCCGATA TERM 1776 1153960 - 1153972 + G 78 -5.5 -5.03145 | TGTTTTGTTCTTCCA TTCGC CAA GCGGA TTTTTTGGCCAATTA TERM 1777 1154854 - 1154835 - g 70 -3.5 -4.78107 | overlap 1154836 1154844 1154845 TACGACGAGCAAAAA GTGGCGA AACTCA TCGCCAA AATGCCGATGACGAA Aflv_1169 1152597 - 1155032 + | HKD family nuclease fused to DNA/RNA helicase of superfamily II Aflv_1170 1155780 - 1155430 - | Transposase Aflv_1171 1155918 - 1156841 + | hypothetical protein TERM 1778 1156827 - 1156857 + F 91 -6.3 -5.48054 | gap 1, opp_overlap 1156829 TTAAAAGATCGTAAC TATTCAGC-CACAT GATC AAGTGAGCTGAATA TTTTTTGCTTTTCCT Aflv_1172 1156904 - 1158361 + | Transposase TERM 1779 1161144 - 1161155 + G 71 -3 -5.06103 | opp_overlap 1161144 AAAAATTTAGAGAAC CATT TAAA AATG TTTTTTAACGATTAT pcrA 1159497 - 1162394 + | Superfamily I helicase domain and RecB family exonuclease domain TERM 1780 1162410 - 1162397 - g 70 -3.9 -4.90381 | opp_overlap 1162397 TGGAAGACAATAAAA TTCAA CAAG TTGAA CATTTTAAGTTTGAA TERM 1781 1163971 - 1164000 + G 71 -8.8 -3.26444 | opp_overlap 1163963, overlap 1163963 1163968 1163966 AGAGAATTGGTGGAT TCCATCATGATT GATTGG AATTATGATGGA TCTGTTCTTGAGCCA Aflv_1174 1162381 - 1164150 + | Adenine specific DNA methylase Mod TERM 1782 1164291 - 1164332 + G 100 -8.1 -5.40474 | gap 1, opp_overlap 1164293, overlap 1164294 1164296 CTGAGAATCCTCAAT CAT-TTTTACGAGTGCCTCA ATT TGAGGCGCTCGAAATGTATG TTTTTTTGAAAGAGT TERM 1783 1164294 - 1164328 + G 84 -10 -3.76885 | opp_overlap 1164293, overlap 1164291 1164296 AGAATCCTCAATCAT TTTTACGAGTGCCTCA ATT TGAGGCGCTCGAAATG TATGTTTTTTTGAAA TERM 1784 1164296 - 1164326 + G 100 -14.8 -3.44915 | opp_overlap 1164293, overlap 1164294 1164291 AATCCTCAATCATTT TTACGAGTGCCTCA ATT TGAGGCGCTCGAAA TGTATGTTTTTTTGA TERM 1785 1164419 - 1164403 - g 78 -2.3 -5.55664 | overlap 1164406 GTACTATGAAAAAAA TAAGTTT GCG AAACGTA CAAGCCCCTTCATTG TERM 1786 1164416 - 1164406 - g 71 -4 -4.8487 | overlap 1164403 CTATGAAAAAAATAA GTTT GCG AAAC GTACAAGCCCCTTCA TERM 1787 1166414 - 1166388 - g 78 -2.4 -5.4588 | CAAAACCAGAAAAAA TATTGTTTAC AGATTTA GTAAACCATA AAGATGTTCAGGAAA Aflv_1175 1164143 - 1166737 + | Predicted type III restriction-modification enzyme, helicase subunit fused to restriction endonuclease-like domain TERM 1788 1166837 - 1166811 - f 100 -15.3 -3.16921 | opp_overlap 1166811, overlap 1166815 ACTAACTCGTAGTAA CAAACGCCAGA ATCCA TCTGGCGTTTG TTTTATTTTAGTAAT TERM 1789 1166811 - 1166837 + F 100 -15.3 -5.14626 | opp_overlap 1166811 1166815 ACTAACTCGTAGTAA CAAACGCCAGA ATCCA TCTGGCGTTTG TTTTATTTTAGTAAT TERM 1790 1166833 - 1166815 - f 89 -10.3 -4.2461 | opp_overlap 1166811, overlap 1166811 ACTCGTAGTAACAAA CGCCAGA ATCCA TCTGGCG TTTGTTTTATTTTAG TERM 1791 1167600 - 1167621 + G 73 -5.2 -4.67651 | opp_overlap 1167600 TTCAGCTACAAGAAA TCGTCGAA AAAAGC TTCGATGA TTTGTTTTGGCATCT Aflv_1176 1166924 - 1170670 + | Superfamily I DNA/RNA helicase TERM 1792 1170765 - 1170783 + F 80 -6 -4.71061 | GAGGAAGTGGCGTTA TTAGGTAG TGA CCACCTAA TTTTTAAATATGGAT TERM 1793 1170894 - 1170855 - f 75 -9.4 -3.36878 | gap 1, opp_overlap 1170870 TTTAGTCACTTATAA TGTTCCTTGCGAATAGTGC CTG GCACTGTTCGCAAAGG-CA TGCACATTGAGCGAG htrA 1171197 - 1172399 + | Serine protease Do (heat-shock protein) TERM 1794 1172575 - 1172559 - g 73 -5.8 -4.45544 | GTCGAGGAAGGAAAA GCGGTC GCTCA AACCGC AAGACAACTCGATAT TERM 1795 1172765 - 1172747 - g 71 -3 -5.0538 | CGCGATCTTAAAAAA GGCCATGA GCA TCTTCGCC AAAAATCAGAAGTAA Aflv_1178 1172484 - 1172780 + | Transposase Aflv_1179 1172819 - 1173343 + | Transposase Aflv_1180 1174608 - 1173763 - | Transcriptional regulator containing HTH domain, AraC family TERM 1796 1173994 - 1174025 + g 75 -10.4 -2.89797 | opp_overlap 1173992 1173997, overlap 1173997 GAATTGAACGGAACT CAATCCAAAATG AGAGGCGA CATTTTGGATTG TAATGTTTGTAAAAG TERM 1797 1174684 - 1174695 + H 70 -3 -5.00884 | opp_overlap 1174684 AGTACTACCTAAAAG CATT TTTA AATG TTTTTTAGAAAAGAT Aflv_1181 1174753 - 1175925 + | Galactonate dehydratase TERM 1798 1176207 - 1176193 - g 74 -5 -4.90013 | opp_overlap 1176193, overlap 1176194 TAAGTTAATGAAAAA CGAAGA ACA TCTTCA TGATATTGCACTAGC gabD 1175948 - 1177399 + | Succinyl-CoA synthetase (alpha subunit) ansB 1177425 - 1178774 + | Aspartate ammonia-lyase TERM 1799 1179523 - 1179538 + GF 72 -7.6 -3.77722 | opp_overlap 1179523 TTTACAGGGAGTACA GCTGTT GGAA AACAGC TTGTTCATGATTCAG dhaS 1178743 - 1180284 + | NAD-dependent aldehyde dehydrogenase gutB 1180330 - 1181487 + | Zn-dependent alcohol dehydrogenase TERM 1800 1181492 - 1181518 + F 88 -11.6 -3.60296 | opp_overlap 1181492 GAGTTTCATAATGAA CTTGGCCGCTCT TGT GGAGTGGTCAAG TTTCAAATAAAAGTG gbsB 1181547 - 1182743 + | Fe-dependent alcohol dehydrogenase, class IV opuD 1182834 - 1184423 + | Choline-glycine betaine transporter TERM 1801 1184437 - 1184465 + F 100 -15.3 -4.89605 | AAATTTGCGACGATC CGCGAACAGTTCC TAT GGTGCTGTTCGCG TTTATTATTTTTTTA TERM 1802 1185163 - 1185130 - f 71 -6.8 -4.03995 | opp_overlap 1185128 1185126 1185152, overlap 1185128 1185131 TTTTTGAGAAAAATA GGTATTTTCCGCAA TTAAAT TTGCGGGAAATACG GATGTTTTTCCTCGC TERM 1803 1185162 - 1185131 - f 75 -10.3 -3.01915 | opp_overlap 1185128 1185126 1185152, overlap 1185130 1185128 TTTTGAGAAAAATAG GTATTTTCCGCAA TTAAAT TTGCGGGAAATAC GGATGTTTTTCCTCG Aflv_1188 1185233 - 1186012 + | Predicted secreted protein TERM 1804 1186810 - 1186800 - f 78 -4 -5.31158 | TAAAAAAACGAAAAA CTAA AAA TTAG CACGGTTGTTGATTA TERM 1805 1187029 - 1186978 - f 95 -13.8 -3.32521 | overlap 1186991 ACGAGATTTTCAGAA TCCAGCGCCAATAGGGCATTTCCG GTAT CGAAAATGCCCTAAGAGGACTGGA GAATCGTTTGGAGAG TERM 1806 1187016 - 1186991 - f 95 -14.1 -3.0464 | overlap 1186978 AATCCAGCGCCAATA GGGCATTTCCG GTAT CGAAAATGCCC TAAGAGGACTGGAGA Aflv_1189 1187161 - 1187517 + | hypothetical protein TERM 1807 1187866 - 1187892 + T 100 -15.2 -4.76802 | opp_overlap 1187874, overlap 1187867 GGACTAATATATTTT TGCGAACAGTGC CTC GCGCTGTTCGCG TTTGTTATTTTTGGA TERM 1808 1187867 - 1187891 + T 100 -16.5 -3.44454 | opp_overlap 1187874, overlap 1187866 GACTAATATATTTTT GCGAACAGTGC CTC GCGCTGTTCGC GTTTGTTATTTTTGG TERM 1809 1188117 - 1188093 - T 83 -4.9 -5.2422 | opp_overlap 1188093 1188100 1188109 AAGGACAGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTACC Aflv_1190 1189628 - 1188180 - | Transposase TERM 1810 1189912 - 1189926 + G 77 -3.5 -5.24129 | GATTCATATGATTTT TGCGG ATCCA CCGTA TTTTTTATCAAACGG Aflv_1191 1189787 - 1190578 + | DNA modification methylase TERM 1811 1191231 - 1191212 - g 90 -10.8 -4.02108 | GTGACTATAAGGAAA GTCGTGAA TTTG TTCACGAC AAAACGTTTGTTTAT TERM 1812 1191407 - 1191423 + G 87 -6.5 -5.18357 | opp_overlap 1191394 1191391 1191405 1191407 CAGATCCGAAAAACA CGGATCC GGC GGATGCG TTTTTTGATGAATTG Aflv_1192 1190617 - 1191546 + | Site-specific DNA methylase TERM 1813 1191677 - 1191689 + G 71 -9.1 -3.26947 | opp_overlap 1191667 1191677 TGCAATCCGCCAATA TCGCG AAC CGCGA TTAATGTGCAAATTC Aflv_1193 1191549 - 1192835 + | hypothetical protein TERM 1814 1192911 - 1192935 + F 88 -7.8 -5.07652 | overlap 1192912 CATTTTCCACCCTCT TGAGCGCCCT TTTTC ACGGCGCTCG TTTTGTTTTGCGCAA TERM 1815 1192912 - 1192934 + F 76 -9.1 -3.63868 | overlap 1192911 ATTTTCCACCCTCTT GAGCGCCCT TTTTC ACGGCGCTC GTTTTGTTTTGCGCA Aflv_1194 1193049 - 1193198 + | hypothetical protein Aflv_1197 1193984 - 1195075 + | Uncharacterized protein containing TPR-repeats TERM 1816 1195070 - 1195095 + F 81 -2.5 -5.67063 | overlap 1195072 TTGTTTTGTGACGAA TTGTGATGACA TGTG TGTCATCGCTC TTTTTTTATACTAAG TERM 1817 1195072 - 1195093 + F 90 -9.5 -4.47611 | overlap 1195070 GTTTTGTGACGAATT GTGATGACA TGTG TGTCATCGC TCTTTTTTTATACTA Aflv_1198 1195121 - 1196539 + | Peptidase family M28 TERM 1818 1196527 - 1196545 + F 88 -8.1 -5.05228 | opp_overlap 1196527 1196526 GCAAGGTGGAAAAAG GGACGTC ATTTA GGCGTCC TTTTTGTGATTTCAT Aflv_1199 1196813 - 1197121 + | Predicted nucleotidyltransferase TERM 1819 1197126 - 1197148 + T 93 -9.9 -4.99134 | gap 1, opp_overlap 1197126 ATGAGAAATAAAAAA GCAGG-GGAC AATC GTCCGCCTGC TTTTTCGTTTACACT TERM 1820 1197148 - 1197126 - T 100 -9.9 -5.73978 | gap 1, opp_overlap 1197126 ATGAGAAATAAAAAA GCAGG-GGAC AATC GTCCGCCTGC TTTTTCGTTTACACT Aflv_1200 1199442 - 1197157 - | Catalase (peroxidase I) TERM 1821 1199559 - 1199504 - R 95 -11.4 -5.14965 | opp_overlap 1199513, overlap 1199507 1199513 ATTTTTATCAAAAAA TTATAAAAATCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGATTTATACGT TTACATCCGTATCTC TERM 1822 1199556 - 1199507 - R 100 -19.7 -3.41701 | opp_overlap 1199513, overlap 1199504 1199513 TTTATCAAAAAATTA TAAAAATCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGATTTATA CGTTTACATCCGTAT TERM 1823 1199513 - 1199550 + r 100 -14.3 -4.02534 | opp_overlap 1199507 1199504 1199513 AAAAAATTATAAAAA TCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGA TTTATACGTTTACAT TERM 1824 1199550 - 1199513 - R 100 -18.7 -5.14894 | opp_overlap 1199513, overlap 1199507 1199504 AAAAAATTATAAAAA TCCCCCATTTCATTCTG TTTA CAGAACAAAATGGGGGA TTTATACGTTTACAT Aflv_1201 1199735 - 1199598 - | hypothetical protein Aflv_1202 1199930 - 1200751 + | Undecaprenyl pyrophosphate phosphatase TERM 1825 1200744 - 1200791 + T 91 -7.9 -5.25656 | opp_overlap 1200753 1200758, overlap 1200734 1200745 1200753 TTTATGTCGTTTATT TTGCATAAATAAAAGGCTCCT TTTCAC GGGAGCCTTTTATTCGTTCAG TTTTTTAATAATTTT TERM 1826 1200745 - 1200790 + T 76 -9.2 -3.72953 | opp_overlap 1200753 1200758, overlap 1200734 1200744 1200753 TTATGTCGTTTATTT TGCATAAATAAAAGGCTCCT TTTCAC GGGAGCCTTTTATTCGTTCA GTTTTTTAATAATTT TERM 1827 1200782 - 1200753 - T 86 -10.9 -3.86897 | opp_overlap 1200734 1200745 1200744 1200753, overlap 1200758 TTTATTTTGCATAAA TAAAAGGCTCC TTTTCACG GGAGCCTTTTA TTCGTTCAGTTTTTT TERM 1828 1200753 - 1200782 + T 88 -11.6 -3.47915 | opp_overlap 1200753 1200758, overlap 1200734 1200745 1200744 TTTATTTTGCATAAA TAAAAGGCTCCT TTTCAC GGGAGCCTTTTA TTCGTTCAGTTTTTT TERM 1829 1200777 - 1200758 - T 82 -6.4 -4.99043 | opp_overlap 1200734 1200753 1200745 1200744, overlap 1200753 TTTGCATAAATAAAA GGCTCC TTTTCACG GGAGCC TTTTATTCGTTCAGT maa 1201340 - 1200780 - | Maltose O-acetyltransferase TERM 1830 1202229 - 1202215 - g 90 -5.7 -5.4833 | opp_overlap 1202215, overlap 1202226 TCATTCAACAAAAAA TGCGT GAAAA ACGCA TTGATGCAGGGGATA Aflv_1204 1201488 - 1202630 + | Radical SAM superfamily enzyme TERM 1831 1202647 - 1202611 - f 100 -12.2 -5.5208 | opp_overlap 1202611 TGAGAAGAGAAAAAA CCCGAACGGTGTTCGC TTAAT GCGGACGCTGTTCGGG TTTTTTATGTTGGTT TERM 1832 1202611 - 1202647 + F 100 -18.8 -5.50925 | opp_overlap 1202611 TGAGAAGAGAAAAAA CCCGAACGGTGTTCGC TTAAT GCGGACGCTGTTCGGG TTTTTTATGTTGGTT TERM 1833 1203042 - 1203031 - g 78 -4.4 -5.10665 | overlap 1203032 AGGTAAGAAAGAAAA GCAT ACGC ATGC ATATGGGTTGTTGGA TERM 1834 1203216 - 1203238 + G 72 -7.8 -3.8186 | TTGTGAGCGGAATGG TTGATGAACA TAT TGTTCAGCAA TTGTTGCTTGAAATA TERM 1835 1203323 - 1203312 - g 85 -4.4 -5.49234 | ATATTGAACAAAAAA TAGC TACA GCTA ATACAACACGGCGCA TERM 1836 1203910 - 1203924 + G 78 -4.2 -5.13473 | overlap 1203911 TGCACGCTTTGATAT TGCGAC AGC GTTGCG TTTTTTACGTATGCT gerKA 1202945 - 1204585 + | Spore germination protein KA gerKC 1204713 - 1205777 + | Spore germination protein KC gerKB 1205795 - 1206907 + | Spore germination protein KB TERM 1837 1206918 - 1206895 - T 86 -7.4 -5.08878 | opp_overlap 1206898, overlap 1206898 AACAGATAAAGAAAA TAAGGGACGA TAAG TCGCCCCTTT TTAAAAATCAAAGTT TERM 1838 1206898 - 1206915 + T 79 -6.9 -4.59773 | opp_overlap 1206895 1206898 AGATAAAGAAAATAA GGGACGA TAAG TCGCCCC TTTTTAAAAATCAAA TERM 1839 1206915 - 1206898 - T 88 -9.1 -4.60302 | opp_overlap 1206898, overlap 1206895 AGATAAAGAAAATAA GGGACGA TAAG TCGCCCC TTTTTAAAAATCAAA Aflv_1208 1207725 - 1206919 - | Aldo/keto reductase TERM 1840 1207445 - 1207433 - G 72 -6.3 -4.40184 | TGAACTAAATACAAA TCGAT ATA ATCGA ACCCGAGTTTTTTTA Aflv_1209 1208550 - 1207834 - | Polysaccharide deacetylase Aflv_1210 1208648 - 1209526 + | Uncharacterized conserved protein, probably secreted sacA 1210122 - 1211612 + | Sucrase-6-phosphate hydrolase TERM 1841 1211615 - 1211636 + F 79 -5.1 -5.06414 | opp_overlap 1211615 TGAGCTAGTGTAAAA GAGGCGG GACAAAAA CCGTCTC TTTTTGTTACAAACG Aflv_1214 1211713 - 1212435 + | Uncharacterized membrane protein, possible permease TERM 1842 1212436 - 1212458 + F 71 -7 -3.99957 | opp_overlap 1212433 1212436 AAAGAAAAAACATAA TTGCCCAC CTTTGTC GTGGGCGA TTTATACATATTTGC TERM 1843 1212493 - 1212519 + F 86 -7.4 -5.02074 | overlap 1212494 CGCTTCGTTGAACCG TTTTTGCATGGT TTG GTCATGCAAAAG TTTTTTGGAAAATAA TERM 1844 1212494 - 1212518 + F 72 -8.7 -3.60762 | overlap 1212493 GCTTCGTTGAACCGT TTTTGCATGGT TTG GTCATGCAAAA GTTTTTTGGAAAATA TERM 1845 1212830 - 1212820 - f 70 -2.6 -5.06465 | opp_overlap 1212820 1212829 AAAAAAAAAAAAAGA TAAA ATT TTTA TTGTGAATATTGTGA Aflv_1215 1212849 - 1213508 + | hypothetical protein Aflv_1216 1213638 - 1213985 + | hypothetical protein TERM 1846 1214334 - 1214360 + F 100 -15.2 -4.76802 | opp_overlap 1214342, overlap 1214335 GGACTAATATATTTT TGCGAACAGTGC CTC GCGCTGTTCGCG TTTGTTATTTTTGGA TERM 1847 1214335 - 1214359 + F 100 -16.5 -3.44454 | opp_overlap 1214342, overlap 1214334 GACTAATATATTTTT GCGAACAGTGC CTC GCGCTGTTCGC GTTTGTTATTTTTGG TERM 1848 1214594 - 1214570 - f 83 -4.9 -5.2422 | opp_overlap 1214570 1214577 1214586 AAGGACAGGAAAAAA GGGCATAGG AAAGCAG CCCTTGCCC TTTCCGTATTTTACC TERM 1849 1216917 - 1216907 - f 78 -4 -5.31158 | TAAAAAAACGAAAAA CTAA AAA TTAG CACGGTTGTTGATTA TERM 1850 1217136 - 1217085 - f 95 -13.8 -3.32521 | overlap 1217098 ACGAGATTTTCAGAA TCCAGCGCCAATAGGGCATTTCCG GTAT CGAAAATGCCCTAAGAGGACTGGA GAATCGTTTGGAGAG TERM 1851 1217123 - 1217098 - f 95 -14.1 -3.0464 | overlap 1217085 AATCCAGCGCCAATA GGGCATTTCCG GTAT CGAAAATGCCC TAAGAGGACTGGAGA TERM 1852 1218321 - 1218309 - g 71 -9.1 -3.32807 | CGAAAACATTATGAA GCGCT TGA AGCGC ATTGAAGGACAAGTG Aflv_1217 1218232 - 1218543 + | Uncharacterized conserved protein, nickel resistance determinant TERM 1853 1220201 - 1220218 + G 71 -4.9 -4.58663 | gap 1, opp_overlap 1220187 AGCAAACGGAATGGT TGCG-CAA CCG TTGACGCA TTTTTCCGCGCTCGT TERM 1854 1220446 - 1220434 - g 73 -5.5 -4.67651 | ATACGGTAAAAGAAA GCTCC AAA GAAGC AATTCAAACATTAAA TERM 1855 1220940 - 1220921 - g 84 -10 -3.85817 | ATCGGTGGTGACAAA CGCGCTTC GTTT GAAACGCG TGAAAATATAAACAT Aflv_1218 1218540 - 1220951 + | Cation transport ATPase Aflv_1219 1220970 - 1221176 + | Copper-ion-binding protein TERM 1856 1221218 - 1221179 - f 73 -9.5 -3.14051 | gap 1, opp_overlap 1221186 1221211, overlap 1221177 1221186 TGATGTGGAGTAAGA GAGAAAAGGGTATCCCTC TGTCG AAGGGATGCCCTTTT-TC AGTAGCGAAAGGTTT TERM 1857 1221212 - 1221186 - f 88 -8.7 -4.6955 | opp_overlap 1221186 1221211, overlap 1221177 1221179 GAGTAAGAGAGAAAA GGGTATCCCTC TGTCG AAGGGATGCCC TTTTTCAGTAGCGAA TERM 1858 1221186 - 1221212 + F 91 -10.2 -4.65895 | opp_overlap 1221177 1221186 1221179, overlap 1221211 GAGTAAGAGAGAAAA GGGTATCCCT CTGTCGA AGGGATGCCC TTTTTCAGTAGCGAA TERM 1859 1221264 - 1221244 - f 79 -8.3 -4.07568 | opp_overlap 1221244 1221252, overlap 1221247 GGTTTTCTGTGAAAA TAACGGCTC CAT GAGCGGTTA TTTTCATGCCTAGGT TERM 1860 1221244 - 1221264 + F 82 -8.3 -4.28548 | opp_overlap 1221244 1221247, overlap 1221252 GGTTTTCTGTGAAAA TAACGGCTC CAT GAGCGGTTA TTTTCATGCCTAGGT TERM 1861 1221683 - 1221726 + F 100 -14.7 -4.84017 | TTGTTGGCTTATTCC CTGGTCGTGCTAGTTGAGC GCTGAG GCTCAACTAGCACCACGGG TTTTTGTAAACAGTT TERM 1862 1222266 - 1222313 + F 70 -9.7 -2.60615 | opp_overlap 1222252, overlap 1222263 1222267 ATCGCCTATTCTTAG GTGACTTGCCCACGGGGGAGG AGCGCC CCTCCCCCGTGGGTCGCAAAC ATATTTCACAAACAT TERM 1863 1222267 - 1222314 + F 72 -9.2 -3.34715 | gap 2, opp_overlap 1222252, overlap 1222266 1222263 TCGCCTATTCTTAGG TGACT-TG-CCCACGGGGGAGG AGCGCC CCTCCCCCGTGGGTCGCAAACA TATTTCACAAACATC TERM 1864 1223384 - 1223410 + F 77 -10.2 -3.28712 | opp_overlap 1223384, overlap 1223369 1223368 1223390 CTTTCCTCTTGAGAA GGGGAAGGGTTT ACC AAACCGTTCTCC TTCTCAAGAGGCCAC Aflv_1220 1223511 - 1223687 + | Copper-ion-binding protein TERM 1865 1223697 - 1223723 + T 84 -6.6 -4.95155 | opp_overlap 1223690 1223692 1223697 GAGTAAGAGAGAAAA GGGTATTCCT CTGTCGA AGGGATGCCC TTTTTGTAGTATCGA TERM 1866 1224029 - 1223986 - T 81 -5.5 -5.06414 | gap 2, opp_overlap 1223997 TTTTTGTAAGAAAAA TGTCC-A-AGCAAGAGACG CTCGCCTT CGTCTCTTGCTGTCGGCCA CGATTCTCACGAGTC TERM 1867 1224496 - 1224479 - T 73 -7.1 -4.04187 | overlap 1224463 1224486 CACTATAAAATACAA TGAAAGA GTGA TCTTTCA CGACTTAAGCTATTC TERM 1868 1224910 - 1224881 - T 79 -8.8 -3.98236 | gap 1 AAAGCCCAGCACAAA TAGGGCATT-TCT GTCAT AGAAAATGCCCTA CGTAGCGGAAAGAAC Aflv_1221 1226365 - 1224908 - | Transposase TERM 1869 1224962 - 1224974 + g 82 -3.3 -5.58074 | opp_overlap 1224955 1224962, overlap 1224971 CAACAGAAGACACAA CGAGT CCC ACACG TTTTTTTCGTGCTTG TERM 1870 1225494 - 1225506 + g 72 -7.7 -3.75884 | opp_overlap 1225493 TATTGTGGAAGAATC CCGAT TTC ATCGG TTGCTTTCTTTCCAC TERM 1871 1226442 - 1226412 - H 100 -6.3 -6.01187 | gap 1, opp_overlap 1226414 AAGGAAAGAAAAAAA TATTCAGCTCACTT TATG ATGTG-GCTGAATA GTTACCCTCATGCGC Aflv_1222 1226713 - 1227945 + | Predicted membrane protein TERM 1872 1228111 - 1228168 + F 70 -5.8 -4.39107 | gap 3, opp_overlap 1228128, overlap 1228122 1228126 1228128 GAGCAAGGGTATGAT GTGGAGTAAGGGAGAAAGGGTG-CCCACA CAA TGTTGGACACCC-T-CTTTCTTATTCCCC TTTATTCGTTGTGTT TERM 1873 1228122 - 1228159 + F 73 -8.5 -3.72593 | gap 1, opp_overlap 1228128, overlap 1228111 1228126 1228128 TGATGTGGAGTAAGG GAGAAAGGGTG-CCCACA CAA TGTTGGACACCCTCTTTC TTATTCCCCTTTATT TERM 1874 1228126 - 1228155 + F 70 -5.7 -4.4634 | gap 1, opp_overlap 1228128, overlap 1228122 1228111 1228128 GTGGAGTAAGGGAGA AAGGGTG-CCCACA CAA TGTTGGACACCCTC TTTCTTATTCCCCTT TERM 1875 1228153 - 1228128 - f 86 -10.5 -3.98826 | gap 1, opp_overlap 1228126 1228122 1228111 1228128 GGAGTAAGGGAGAAA GGGTGCCC-ACA CAA TGTTGGACACCC TCTTTCTTATTCCCC TERM 1876 1228128 - 1228153 + F 77 -8.3 -3.82963 | gap 1, opp_overlap 1228128, overlap 1228126 1228122 1228111 GGAGTAAGGGAGAAA GGGTG-CCCACA CAA TGTTGGACACCC TCTTTCTTATTCCCC TERM 1877 1228204 - 1228218 + F 72 -8.6 -3.50325 | overlap 1228203 1228200 GATCTGGGGTATAGT CCGATT TGT AATCGG TATATTTTACTTCTG TERM 1878 1228440 - 1228452 + F 71 -6.3 -4.16392 | overlap 1228419 GATGGACATCCATCG GTGAA TTG TTCAC TATTTTTACTTTTAC TERM 1879 1230045 - 1230027 - g 77 -4.6 -5.03747 | overlap 1230015 AAACGTTCCAAAAAA TGAACGAT CTG ATCACTCA TCGTGGTCCTGATGA asnB 1229951 - 1231843 + | Asparagine synthetase TERM 1880 1231860 - 1231885 + F 93 -6.9 -5.52096 | TGGTTAGTTATGTTC GGAGCTTCT TTTTCTCT AGGAGCTCC TTTTTTATTGCGTTT Aflv_1226 1231932 - 1232348 + | Uncharacterized membrane protein TERM 1881 1232372 - 1232346 - T 100 -9.6 -5.85425 | opp_overlap 1232346 GAAATAAAGAAAAAA TAGCTCTATG TTTCGTG CATAGAGCTA TTTGTCTGCGGCAAT TERM 1882 1232346 - 1232372 + T 86 -10.3 -4.03413 | opp_overlap 1232346 GAAATAAAGAAAAAA TAGCTCTATGT TTCGT GCATAGAGCTA TTTGTCTGCGGCAAT Aflv_1227 1233869 - 1232370 - | Amine oxidase TERM 1883 1232890 - 1232907 + g 100 -4 -6.23317 | opp_overlap 1232890 ATGTAAACTGTAAAC GCTCCC CAAGCC GGGCGC TTTTTTTCTTTTTCT TERM 1884 1234410 - 1234420 + G 73 -8.2 -3.65827 | opp_overlap 1234403 1234402 GCGAAAACGTCCGAA GCGG TTT CCGC TTTCGATAGACATTG TERM 1885 1234535 - 1234525 - g 70 -5.4 -4.49337 | TCACAATGTACAAAA CGTT GGG AACG TACGAGCGAACAAGA TERM 1886 1234754 - 1234766 + G 71 -3.3 -4.95758 | CGTACATAAAAGAGC TAGCG TGG CGCGA TTTTTATCATATGAT Aflv_1228 1233916 - 1235322 + | Deoxyribodipyrimidine photolyase TERM 1887 1235324 - 1235357 + F 93 -8.3 -5.20534 | opp_overlap 1235333, overlap 1235326 GGATGAATGAGTGAG TATAAAAGTCCGCTT CATG AAGTGGGCTTTTATC TTTTTCTTCATTAGT TERM 1888 1235326 - 1235355 + F 90 -10.9 -4.21997 | opp_overlap 1235333, overlap 1235324 ATGAATGAGTGAGTA TAAAAGTCCGCTT CATG AAGTGGGCTTTTA TCTTTTTCTTCATTA aldY 1235442 - 1236911 + | NAD-dependent aldehyde dehydrogenase TERM 1889 1237121 - 1237160 + G 88 -9.6 -4.29977 | gap 1, opp_overlap 1237130, overlap 1237124 GTGTTTTTTGATTTA CAT-GCTAAAGGAGTTG TCTTGCC TAACTCCTTTAGCTATG TTTGTTCGGTTATTT TERM 1890 1237124 - 1237156 + G 89 -11.5 -3.43412 | opp_overlap 1237130, overlap 1237121 TTTTTTGATTTACAT GCTAAAGGAGTTG TCTTGCC TAACTCCTTTAGC TATGTTTGTTCGGTT Aflv_1230 1236992 - 1237183 + | hypothetical protein Aflv_1231 1237631 - 1237170 - | AraC-type DNA-binding domain-containing protein Aflv_1232 1237747 - 1238142 + | Predicted membrane protein Aflv_1233 1238228 - 1239595 + | Methyl-accepting chemotaxis protein TERM 1891 1239597 - 1239638 + T 74 -8.9 -3.53031 | gap 1, opp_overlap 1239603 1239607, overlap 1239596 1239600 1239601 1239603 ATTTGTCTATGTAGT CACACAGTAAGCCAGTTG CGCTTAT CAGCTGGCTTACTG-GTA TTGATTTAACGTAGC TERM 1892 1239600 - 1239636 + T 86 -11.7 -3.33865 | opp_overlap 1239603 1239607, overlap 1239597 1239596 1239601 1239603 TGTCTATGTAGTCAC ACAGTAAGCCAGTTG CGCTTAT CAGCTGGCTTACTGG TATTGATTTAACGTA TERM 1893 1239601 - 1239635 + T 95 -15.2 -2.59837 | opp_overlap 1239603 1239607, overlap 1239600 1239597 1239596 1239603 GTCTATGTAGTCACA CAGTAAGCCAGTTG CGCTTAT CAGCTGGCTTACTG GTATTGATTTAACGT TERM 1894 1239633 - 1239603 - T 71 -9.8 -2.91912 | opp_overlap 1239601 1239600 1239597 1239596 1239603, overlap 1239607 CTATGTAGTCACACA GTAAGCCAGTTG CGCTTAT CAGCTGGCTTAC TGGTATTGATTTAAC TERM 1895 1239603 - 1239633 + T 81 -12 -2.83396 | opp_overlap 1239603 1239607, overlap 1239601 1239600 1239597 1239596 CTATGTAGTCACACA GTAAGCCAGTTG CGCTTAT CAGCTGGCTTAC TGGTATTGATTTAAC gltC 1240538 - 1239630 - | Transcriptional regulator (LysR family) TERM 1896 1239978 - 1239992 + g 71 -5 -4.67353 | overlap 1239973 ATGTCGTAATTCGCT TAAAGC GAT GCTTTG TTTTTGACTGAGTGG TERM 1897 1242094 - 1242072 - g 71 -4.8 -4.62085 | overlap 1242075 ACGTGGAAAAAACAA TCATTCCGAT GGC AACGGAAGGA AAAGATCCAACGGGG gltA 1240649 - 1245193 + | Glutamate synthase (large subunit) gltB 1245227 - 1246687 + | Glutamate synthase (small subunit) Aflv_1237 1246744 - 1247112 + | hypothetical protein TERM 1898 1247128 - 1247159 + F 100 -7.4 -6.20267 | overlap 1247122 1247129 ATAAACATGTTGGAT CCCTTTGATCTAAT CGTT AGTAGATCAAAGGA TTTTTTTATTTTTGG TERM 1899 1247129 - 1247158 + F 90 -10.9 -4.285 | overlap 1247122 1247128 TAAACATGTTGGATC CCTTTGATCTAAT CGTT AGTAGATCAAAGG ATTTTTTTATTTTTG TERM 1900 1248247 - 1248235 - g 95 -7.7 -5.03145 | opp_overlap 1248235 1248234 GAACTGTCGAAAAAA GAAGG CAC CCTTC ATTTAGATGCATTGA ilvD 1247197 - 1248909 + | Dihydroxyacid dehydratase/phosphogluconate dehydratase Aflv_1239 1248979 - 1249320 + | hypothetical protein TERM 1901 1249354 - 1249304 - T 100 -9.4 -5.4756 | gap 2, opp_overlap 1249318 1249346 1249348, overlap 1249308 1249318 AACTCGAAGAAAAAA TGCATGCAGAAAAATAGAAGGTGC CGAGC GCACCTTCTATTTTTCTTC-C-CA AGCTGGAAGCATTTT TERM 1902 1249352 - 1249308 - T 100 -16 -2.99438 | opp_overlap 1249318 1249346 1249348, overlap 1249304 1249318 CGAAGAAAAAATGCA TGCAGAAAAATAGAAGGTGC CGAGC GCACCTTCTATTTTTCTTCC CAAGCTGGAAGCATT TERM 1903 1249342 - 1249318 - T 100 -13 -4.88067 | opp_overlap 1249318, overlap 1249308 1249304 ATGCATGCAGAAAAA TAGAAGGTGC CGAGC GCACCTTCTA TTTTTCTTCCCAAGC TERM 1904 1249318 - 1249342 + T 100 -13 -5.06414 | opp_overlap 1249308 1249304 1249318 ATGCATGCAGAAAAA TAGAAGGTGC CGAGC GCACCTTCTA TTTTTCTTCCCAAGC acdA 1250551 - 1249340 - | Acyl-CoA dehydrogenase TERM 1905 1250134 - 1250154 + gT 74 -9.7 -3.14132 | opp_overlap 1250134 1250133 1250131 AAATAGCAGCAACAT CTGAGCCAG CGT TTGGCTCGG TTAATCCGAACGCAC Aflv_1241 1251806 - 1250520 - | Predicted acyl-CoA transferase TERM 1906 1251743 - 1251706 - GH 91 -6.4 -5.4505 | gap 1 TTTTGTAATAAAAAA GCCAGT-CCCTCCCT CAAACGTAC AGGAAAGGAACTGGC ATAAACGATCCGAGC TERM 1907 1251886 - 1251898 + H 87 -3.5 -5.79595 | opp_overlap 1251897 ATAAAACAACACATT TATTT TGT AAATA TTTTTTATTTTAAAA TERM 1908 1252018 - 1252057 + H 100 -19.6 -5.38054 | opp_overlap 1252015 1252012 AACGCATAAGCACCA GCCAGTTTAGTCATTGTG TCAT CACGATGATTAAACTGGC TTTTTATTTGTCGAA TERM 1909 1252179 - 1252201 + G 71 -9.2 -2.9348 | opp_overlap 1252172 1252179 1252176 CAAAAGGAGCAATGA TTCGCGAC ATAGATG GTCGCGAA TATATCGACTTTGCG TERM 1910 1252201 - 1252179 - g 70 -9.2 -2.84344 | opp_overlap 1252179, overlap 1252172 1252176 CAAAAGGAGCAATGA TTCGCGAC ATAGATG GTCGCGAA TATATCGACTTTGCG gabT 1252082 - 1253386 + | 4-aminobutyrate aminotransferase-like aminotransferase Aflv_1243 1253383 - 1254828 + | NAD-dependent aldehyde dehydrogenase TERM 1911 1256114 - 1256128 + GF 71 -7.2 -3.90318 | overlap 1256110 CAGCTTGTCTGGCCG TATGAG TGG CTCATA TTTATCGGATGGTGG Aflv_1244 1254773 - 1256218 + | Amino acid transporter TERM 1912 1256218 - 1256237 + F 93 -7.8 -5.38054 | opp_overlap 1256203 TGTACATCGGATGTA GAGGGGCG AATA TGCTCCTC TTTTTGTTTGTGAGG ilvB 1256308 - 1257933 + | Acetolactate synthase (acetohydroxy-acid synthase) (large subunit) Aflv_1246 1257930 - 1259405 + | NAD-dependent aldehyde dehydrogenase TERM 1913 1260303 - 1260292 - gf 90 -5.8 -5.48213 | opp_overlap 1260292 GATTTAAAAGAAAAA GACG ATGT CGTC TTATTGCGCGTAATT Aflv_1247 1259275 - 1260567 + | Saccharopine dehydrogenase (NADP+, L-glutamate-forming) TERM 1914 1260668 - 1260682 + G 73 -8.6 -3.65991 | opp_overlap 1260665 1260667, overlap 1260665 TGGAGGTGAACATAT GCTACA TAT TGTAGC TTGTATTAAGCAAGT etfB 1260666 - 1261478 + | Electron transfer flavoprotein, beta subunit etfA 1261491 - 1262540 + | Electron transfer flavoprotein, alpha subunit TERM 1915 1263637 - 1263625 - g 73 -5.5 -4.64992 | opp_overlap 1263625 TTGAAAAAATATAAA GACGC AAC GCATC ATTTTGAGTCGTTTC Aflv_1250 1262533 - 1263828 + | Dehydrogenase (flavoprotein) Aflv_1251 1263810 - 1264112 + | Ferredoxin-like protein TERM 1916 1264303 - 1264323 + F 100 -8.3 -5.85425 | TTCTTCTCATGTGAG CCACCCT TTATCGT AGGGTGG TTTTTTGTTTCTTTA Aflv_1252 1264842 - 1265144 + | Predicted membrane protein TERM 1917 1265159 - 1265176 + F 100 -9.1 -5.85425 | GCTTCATTATTTCTA CCATCCC ATCT GGGGTGG TTTTTTGTTTCTTTG TERM 1918 1265249 - 1265262 + G 76 -2.5 -5.26875 | overlap 1265240 TTTTTTTTTTATGAT TATTT CGTA AAATA TTTTTTCGTTAGGAG Aflv_1253 1265189 - 1265650 + | hypothetical protein Aflv_1254 1266045 - 1266239 + | hypothetical protein TERM 1919 1266244 - 1266292 + T 100 -22.8 -3.55203 | opp_overlap 1266244 1266247 1266250 1266255, overlap 1266247 1266279 GGCGTTTTTAGTGAA CAACAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCGTTG TTTGCAACCCCTTTT TERM 1920 1266292 - 1266244 - T 100 -22.8 -3.05384 | opp_overlap 1266244 1266247 1266279, overlap 1266247 1266250 1266255 GGCGTTTTTAGTGAA CAACAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCGTTG TTTGCAACCCCTTTT TERM 1921 1266289 - 1266247 - T 100 -18.7 -3.67597 | opp_overlap 1266247 1266244 1266279, overlap 1266244 1266250 1266255 GTTTTTAGTGAACAA CAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCG TTGTTTGCAACCCCT TERM 1922 1266247 - 1266289 + T 100 -18.7 -3.90922 | opp_overlap 1266244 1266247 1266250 1266255, overlap 1266244 1266279 GTTTTTAGTGAACAA CAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCATCG TTGTTTGCAACCCCT Aflv_1255 1266381 - 1266223 - | hypothetical protein TERM 1923 1266286 - 1266250 - G 100 -16.8 -3.97307 | opp_overlap 1266247 1266244 1266279, overlap 1266247 1266244 1266255 TTTAGTGAACAACAA TGAAACCCATGATGCT AGTTG AGCGTCATGGGTTTCA TCGTTGTTTGCAACC TERM 1924 1266281 - 1266255 - G 93 -10.9 -4.14945 | opp_overlap 1266247 1266244 1266279, overlap 1266250 1266247 1266244 TGAACAACAATGAAA CCCATGATGCT AGTTG AGCGTCATGGG TTTCATCGTTGTTTG Aflv_1256 1266440 - 1267018 + | Transcriptional regulator, TetR/AcrR family Aflv_1257 1267156 - 1267905 + | Alpha/beta hydrolase superfamily protein TERM 1925 1267942 - 1267928 - f 82 -8.6 -4.16284 | opp_overlap 1267928 1267927 1267930, overlap 1267931 ATACTGCTCAATAAA GACTGA CGG TCAGTC ATTTAACTTATGACA Aflv_1258 1267997 - 1269193 + | Membrane protein TERM 1926 1269312 - 1269329 + F 100 -9.1 -5.85425 | CATTCAACATTTCCA CCATCCC ATAT GGGGTGG TTTTTTATTTCTTTA TERM 1927 1269392 - 1269405 + F 75 -2.5 -5.26875 | overlap 1269383 TATTTTTTTTATGAT TATTT CGTA AAATA TTTTTTCGTTAGGAG Aflv_1259 1269428 - 1269793 + | hypothetical protein Aflv_1260 1270188 - 1270382 + | hypothetical protein TERM 1928 1270387 - 1270436 + F 83 -11 -3.64103 | gap 1, opp_overlap 1270398, overlap 1270387 1270391 1270398 GGCGTTTTTAGTGAA CAACAATG-AAACCCATGATGCT AGTTG AGCGTCATGGGTTAATGTTGTTG TTTGCAGTATGAGTA TERM 1929 1270387 - 1270433 + F 71 -7.6 -3.95378 | gap 2, opp_overlap 1270398, overlap 1270387 1270391 1270398 GGCGTTTTTAGTGAA CAACAATGAAACCCATGATGCT AGTTG AGCGTCATGGGTTA-AT-GTTG TTGTTTGCAGTATGA TERM 1930 1270398 - 1270424 + F 95 -13.1 -3.51206 | opp_overlap 1270398, overlap 1270391 1270387 1270387 TGAACAACAATGAAA CCCATGATGCT AGTTG AGCGTCATGGG TTAATGTTGTTGTTT TERM 1931 1270424 - 1270398 - f 90 -10.9 -4.14945 | opp_overlap 1270398 1270391 1270387 1270387 TGAACAACAATGAAA CCCATGATGCT AGTTG AGCGTCATGGG TTAATGTTGTTGTTT TERM 1932 1271129 - 1271113 - g 90 -11.5 -3.64599 | GGACTATATGTGAAA CGGCAGC GAA GCCGCCG AAGAGGAAAGGAAGA Aflv_1261 1270525 - 1271955 + | Transposase TERM 1933 1272120 - 1272098 - f 78 -2.8 -5.40474 | opp_overlap 1272098 1272100 1272112, overlap 1272100 1272112 ATCTTTTTAAAAAAA CATATTGACA AAA TGTTAATATA ATTTTAAATTTAAAT TERM 1934 1272464 - 1272452 - f 70 -3.3 -4.93968 | opp_overlap 1272463, overlap 1272453 ACGCAGAATGAAAAA TGCCA ACA TGGCG AAACGAATGGCAGCG TERM 1935 1273610 - 1273594 - g 73 -5.1 -4.6955 | opp_overlap 1273594, overlap 1273595 TACGAATATACAAAA TCTGCAA CTC TTGCAGC AATTGTCGCATTGGT TERM 1936 1273609 - 1273595 - g 71 -8.6 -3.40645 | opp_overlap 1273594, overlap 1273594 ACGAATATACAAAAT CTGCAA CTC TTGCAG CAATTGTCGCATTGG Aflv_1262 1273474 - 1274703 + | Permease of the major facilitator superfamily Aflv_1263 1275899 - 1274877 - | Transposase TERM 1937 1276396 - 1276413 + H 100 -9.1 -5.59534 | opp_overlap 1276369 CATTCAAAATTTCCA CCATCCC ATAT GGGGTGG TTTTTTGTTATACTT TERM 1938 1276711 - 1276691 - g 71 -8.9 -3.40403 | opp_overlap 1276698 GTTTCCGGACTATAA GGCGAATCG TGG CGAGCCGCC GCATGAATTAATTCC Aflv_1264 1276461 - 1277294 + | 5'-3' exonuclease (including N-terminal domain of PolI) TERM 1939 1277750 - 1277740 - g 71 -6.8 -4.09511 | AATATGTTTGCAAAA CCAC AAG GTGG ACGAATTATTATGAT Aflv_1265 1277308 - 1278084 + | Dehydrogenase TERM 1940 1278265 - 1278291 + T 77 -9.5 -3.59966 | gap 1, opp_overlap 1278271, overlap 1278268 TTTCAAAAGAGATTT TAACCAGCC-CC ACGC GGAGGCTGGTTG TTGTATATGCGCTAT TERM 1941 1278268 - 1278288 + T 79 -9 -3.92996 | gap 1, opp_overlap 1278271, overlap 1278265 CAAAAGAGATTTTAA CCAGCC-CC ACGC GGAGGCTGG TTGTTGTATATGCGC Aflv_1266 1279325 - 1278303 - | ABC-type Fe3+-siderophore achromobactin transport system, periplasmic component Aflv_1267 1279421 - 1280455 + | ABC-type Fe3+-siderophore achromobactin transport system, permease component TERM 1942 1280943 - 1280931 - g 100 -10.5 -4.58395 | opp_overlap 1280930 1280931 GCTAGCTTGGAAAAA CGGGG TGT CCCCG ATTCGTCTCGTCTTG TERM 1943 1280931 - 1280943 + G 74 -10.5 -2.59154 | opp_overlap 1280931, overlap 1280930 GCTAGCTTGGAAAAA CGGGG TGT CCCCG ATTCGTCTCGTCTTG TERM 1944 1281345 - 1281359 + G 73 -7.1 -4.15222 | overlap 1281341 TTCTTTTGGAGGGAT GCTGC CAATA GCAGC TTTGTTAGGCGGCAT Aflv_1268 1280452 - 1281504 + | ABC-type Fe3+-siderophore achromobactin transport system, permease component TERM 1945 1281982 - 1281948 - g 72 -10.1 -2.82516 | gap 1 TCTCTCAGGAGGACA GCGCCAACGTGCATGG ATTG CGATG-ACATTGGCGC AACATACGGAAGTCA Aflv_1269 1281517 - 1282329 + | ABC-type Fe3+-siderophore achromobactin transport system, ATPase component TERM 1946 1282979 - 1282992 + G 81 -5.3 -5.24129 | opp_overlap 1282979 AAGTCGTATTCAAAG GACAA CGTG TTGTC TTTTTTATCAAACAA Aflv_1270 1282326 - 1283045 + | Uncharacterized Fe-S protein TERM 1947 1283081 - 1283061 - T 89 -10.4 -4.30396 | opp_overlap 1283061 AATGAAATAGAGAAA CCAGCCCC ACGCG GAGGCTGG TTGTTATTTTCGCAC TERM 1948 1283061 - 1283081 + T 85 -9 -4.20868 | gap 1, opp_overlap 1283061 AATGAAATAGAGAAA CCAGCC-CC ACGC GGAGGCTGG TTGTTATTTTCGCAC proA 1284326 - 1283085 - | Gamma-glutamyl phosphate reductase TERM 1949 1283594 - 1283611 + g 74 -4.1 -4.96501 | GTAGTTTCGCATTGA TGACGAT ATCG ATCGCCA TTTCTTTTTGTGCGG TERM 1950 1284231 - 1284246 + g 100 -4.6 -5.94214 | TAACGCTTCTGCAAT CATCGC GAGC GCGTTG TTTTTTTCTTCTGTT proB 1285484 - 1284348 - | Glutamate 5-kinase TERM 1951 1284495 - 1284509 + g 71 -4.2 -4.8622 | overlap 1284496 ATATACTTGCCCTCT AGCGAT TAC ATCGCC TTTTTGATTGACGAC TERM 1952 1285398 - 1285410 + g 88 -3.3 -5.82172 | GCGTAGTTTTTGTTC CGAGA GTG TCCCG TTTTTTTCTGTTAAT TERM 1953 1285531 - 1285496 - R 100 -12.7 -6.20267 | opp_overlap 1285496, overlap 1285522 CCAAAAATAAAAAAA CGCTTCTTCGTCCTT ATAAAA AAGGACGGAAAAGCG TTGTTTCCGCGGTAC TERM 1954 1285496 - 1285531 + r 93 -12.7 -3.91716 | opp_overlap 1285496 1285522 CCAAAAATAAAAAAA CGCTTCTTCGTCCTT ATAAAA AAGGACGGAAAAGCG TTGTTTCCGCGGTAC Aflv_1273 1286275 - 1285775 - | hypothetical protein Aflv_1274 1286419 - 1287327 + | ABC-type Na+ efflux pump, ATPase component TERM 1955 1287584 - 1287554 - g 73 -2.6 -5.24515 | AATAAAGAAATAAAA CTTGTTCGCCAC AATGAAA ATGAAGAACAAG CGAAAAAATATGTTC Aflv_1275 1287311 - 1288549 + | ABC-type Na+ efflux pump, permease component TERM 1956 1288574 - 1288548 - T 71 -9.5 -2.89941 | opp_overlap 1288553, overlap 1288553 AATTAACGAAAAGAT GAAAACCGAGC GGGTG GCTCGGTTTTT TACATTGGTTTTGTT TERM 1957 1288569 - 1288553 - T 91 -9.4 -4.56729 | opp_overlap 1288553, overlap 1288548 ACGAAAAGATGAAAA CCGAGC GGGTG GCTCGG TTTTTTACATTGGTT TERM 1958 1288553 - 1288569 + T 100 -9.4 -5.1848 | opp_overlap 1288553 1288548 ACGAAAAGATGAAAA CCGAGC GGGTG GCTCGG TTTTTTACATTGGTT Aflv_1276 1289044 - 1288574 - | Uncharacterized conserved secreted protein, contains metal-binding cluster Aflv_1277 1289045 - 1291078 + | Jag family RNA-binding domain fused to uncharacterized conserved protein TERM 1959 1291072 - 1291119 + F 91 -8 -5.24989 | gap 1, opp_overlap 1291082 1291084 TCAAGAAATTGTATT TGGATAAAAAGGCGCAGTGGC AATAAAG GCCA-TGCGTCTTTTTATATA TTTTTTCATCTATAC TERM 1960 1291109 - 1291082 - f 70 -3.4 -4.84359 | gap 1, opp_overlap 1291072, overlap 1291084 GTATTTGGATAAAAA GGCGCAGTGGC AATAAAG GCCA-TGCGTC TTTTTATATATTTTT TERM 1961 1293047 - 1293037 - g 71 -3.2 -4.96468 | TAAACGGAAAGAAAA TGGA AAT CCCA ATTCGCAAACTTTTA acsA 1291194 - 1293170 + | Acetoacetyl-coenzyme A synthetase (Acetoacetate--CoA ligase 1) TERM 1962 1293201 - 1293172 - f 79 -11.5 -2.65091 | opp_overlap 1293175, overlap 1293175 ATTCGAATGTATAAG CAAGGCTGTTGCC GTTT GGTAACAGCCTTA GTGGTGTACGCTGCT TERM 1963 1293175 - 1293198 + F 91 -13.2 -3.24925 | opp_overlap 1293175 1293172 CGAATGTATAAGCAA GGCTGTTGCC GTTT GGTAACAGCC TTAGTGGTGTACGCT TERM 1964 1293198 - 1293175 - f 82 -11 -3.47403 | opp_overlap 1293175, overlap 1293172 CGAATGTATAAGCAA GGCTGTTGCC GTTT GGTAACAGCC TTAGTGGTGTACGCT Aflv_1279 1293278 - 1293673 + | Transcriptional regulator (mercuric resistance operon regulatory protein) TERM 1965 1293737 - 1293748 + G 70 -5.8 -4.30719 | TAGCACTCATTGATG GCGA TGTG TCGC TTTCTTATCGAGAAG TERM 1966 1294800 - 1294787 - g 71 -2.3 -5.2112 | AAGACGAGGAAAAAA CAGCG GAAA CGGTG AAAAACGGTTGGCTA Aflv_1280 1293670 - 1295199 + | Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) TERM 1967 1296675 - 1296657 - g 82 -3.1 -5.44721 | opp_overlap 1296661 1296663 1296664 ATCACGCCAAAAAAA TCGCCAA TCGCC TTTGCGA CTTGTATTTGAGCGT Aflv_1281 1295177 - 1296847 + | Acyl-CoA dehydrogenase TERM 1968 1296851 - 1296877 + TF 100 -14.5 -3.40403 | opp_overlap 1296851 GTAGAAGTATAAAAA GGCAAGGGACC AAGTC GGTTCCTTGCC TTATAGTAAAACAAA TERM 1969 1296877 - 1296851 - Tf 100 -13 -5.01535 | opp_overlap 1296851 GTAGAAGTATAAAAA GGCAAGGGACCA AGT CGGTTCCTTGCC TTATAGTAAAACAAA Aflv_1282 1297531 - 1296878 - | Predicted membrane protein, hemolysin III TERM 1970 1296993 - 1296982 - Gf 71 -2.2 -5.1287 | GCCATACGTAAAAAA CAGC GCCG ACTG TGTACAAAACTCCGC TERM 1971 1297677 - 1297666 - gR 86 -2.2 -5.88197 | CGAAAGACAAAAAAA TGGC TTGT ACCA TCGTTTATTGGTGTG Aflv_1283 1297531 - 1298553 + | Hydrolase of the alpha/beta superfamily TERM 1972 1298546 - 1298604 + Tr 81 -5.4 -5.04385 | gap 1, opp_overlap 1298556, overlap 1298551 1298556 TTCTAGAAAAAGTGC AAAAATAAAAGGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCCTTCAGTTTGC TTTTTTGAGCATGTG TERM 1973 1298551 - 1298599 + Tr 90 -9.7 -4.42765 | gap 1, opp_overlap 1298556, overlap 1298546 1298556 GAAAAAGTGCAAAAA TAAAAGGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCCTTCAG TTTGCTTTTTTGAGC TERM 1974 1298556 - 1298594 + Tr 100 -16.2 -3.38096 | gap 1, opp_overlap 1298556, overlap 1298551 1298546 AGTGCAAAAATAAAA GGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCC TTCAGTTTGCTTTTT TERM 1975 1298594 - 1298556 - TR 100 -14 -5.27023 | gap 1, opp_overlap 1298551 1298546 1298556 AGTGCAAAAATAAAA GGCAAA-CCGTCGTTCC AAGAGG GGAGCGACGGCTTTGCC TTCAGTTTGCTTTTT Aflv_1284 1299054 - 1298596 - | hypothetical protein TERM 1976 1299152 - 1299175 + r 78 -2.5 -5.4492 | opp_overlap 1299155, overlap 1299155 GCCGTCATCTTATCA TAATTTGTC AAAATG GACAAACTA TTTTTTATATATGTG Aflv_1285 1299806 - 1299201 - | Stand-alone sensor domain protein TERM 1977 1299559 - 1299571 + g 77 -6.3 -4.69664 | TCGAATGTACTCGCA GCAAA GTC TTTGC TTTTTAACTGATATA TERM 1978 1299886 - 1299870 - R 100 -7.2 -6.01187 | opp_overlap 1299870 AATGAAATAAAAAAA GGGCGA GATGG CCGCCC TTTTGCGTTAAAAAA TERM 1979 1299870 - 1299886 + r 71 -6.5 -4.27316 | opp_overlap 1299870 AATGAAATAAAAAAA GGGCG AGATGGC CGCCC TTTTGCGTTAAAAAA Aflv_1286 1301264 - 1299894 - | hypothetical protein TERM 1980 1301868 - 1301885 + G 70 -7.1 -3.7557 | opp_overlap 1301868, overlap 1301866 AATAGACATCACAGA GAAAATG AACA CATTTTC TGTTTCATTTTTAAA Aflv_1287 1301608 - 1302594 + | hypothetical protein TERM 1981 1302633 - 1302591 - T 77 -11 -2.8028 | gap 1, opp_overlap 1302600, overlap 1302600 AAAAGGAAGAGATTA TTA-AAAAAAGCGACAAAG GGTTAT CCTTGTCGCTTTTTTGTAA CGATATAATACACTG TERM 1982 1302623 - 1302600 - T 100 -8.9 -5.56568 | opp_overlap 1302600, overlap 1302591 AGATTATTAAAAAAA GCGACAAAG GGTTAT CCTTGTCGC TTTTTTGTAACGATA TERM 1983 1302600 - 1302623 + T 91 -8.2 -5.252 | gap 1, opp_overlap 1302591 1302600 AGATTATTAAAAAAA GCGACAAAGGG TTA TCCT-TGTCGC TTTTTTGTAACGATA Aflv_1288 1303930 - 1302611 - | Amino acid transporter TERM 1984 1304060 - 1304071 + H 70 -3 -5.10029 | overlap 1304059 ATAAAATTAAATTTG GTTT AAAG AAAC TTTTTTAACCTTAAT mntA 1304258 - 1305133 + | ABC-type Mn2+ transport system, periplasmic component/surface adhesin mntB 1305130 - 1305870 + | ABC-type Mn2+ transport system, ATPase component mntC 1305982 - 1306776 + | ABC-type Mn2+ transport system, permease component mntD 1306773 - 1307642 + | ABC-type Mn2+ transport system, permease component TERM 1985 1307650 - 1307631 - T 93 -7.9 -5.4477 | opp_overlap 1307631 AAATGGCTAAAAAAA TCTCCTG TCTAGG CAGGAGA TTTAGTCTTTTATTG TERM 1986 1307631 - 1307650 + T 79 -8.6 -4.13368 | opp_overlap 1307631 AAATGGCTAAAAAAA TCTCCTGT CTAG GCAGGAGA TTTAGTCTTTTATTG Aflv_1293 1307789 - 1307652 - | hypothetical protein TERM 1987 1308194 - 1308211 + G 100 -8.5 -5.26247 | CAATTCTCCGTTATT CTCATCA CCGT TGATGAG TTTTATTTGTTTTGC Aflv_1294 1307883 - 1309145 + | Permease of the major facilitator superfamily TERM 1988 1309240 - 1309275 + F 70 -2.7 -5.1471 | CGTTATCGTTGACAA GGC-GCACACCGTGATG TACA TAT-ATGGTGTGTAGCC TTTCTTTTTTCTCAT Aflv_1295 1309330 - 1309983 + | Uncharacterized conserved domain protein TERM 1989 1310006 - 1309986 - f 70 -5.4 -4.42238 | opp_overlap 1309986 1309994, overlap 1309989 1309998 CGATTCGAACTAAAA GATGCAAC GACAT GTTGCGTC TTTTTTTGTCAAAGT TERM 1990 1309986 - 1310006 + F 100 -8.3 -5.61596 | opp_overlap 1309986 1309989 1309998, overlap 1309994 CGATTCGAACTAAAA GATGCAACG ACA TGTTGCGTC TTTTTTTGTCAAAGT xpaC 1310120 - 1310779 + | 5-bromo-4-chloroindolyl phosphate hydrolysis protein TERM 1991 1311715 - 1311703 - g 71 -4.9 -4.70879 | CGGAAATGTTAAAAA TCAAT ACG ATTGA AGCAGCAAAAGAAAA Aflv_1297 1310763 - 1311914 + | Uncharacterized protein involved in tellurite resistance TERM 1992 1311904 - 1311923 + F 93 -5.7 -5.61689 | opp_overlap 1311904 1311906 TGCTTACACTAAAAA GGGCTGA ATAAAA TCAGCTC TTTTTTATTGATTTT Aflv_1298 1311981 - 1312334 + | Rhodanese-related sulfurtransferase TERM 1993 1313726 - 1313708 - g 70 -7.4 -3.7574 | opp_overlap 1313708, overlap 1313706 TTCATCAGCAAAAGA TCCAGTCA ATA TGGCTGGA TATGTAGCATCGAAC TERM 1994 1313708 - 1313726 + G 70 -9.6 -2.89564 | opp_overlap 1313706 1313708 TTCATCAGCAAAAGA TCCAGTCA ATA TGGCTGGA TATGTAGCATCGAAC Aflv_1299 1312407 - 1314047 + | NAD(FAD)-dependent dehydrogenase fused to Rhodanese-like domain Aflv_1300 1314053 - 1314355 + | Rhodanese-related sulfurtransferase TERM 1995 1314353 - 1314377 + F 100 -10.1 -5.35222 | opp_overlap 1314356 GAAGGAGAAGTGGAA TAAGACTGGTG ATA TGCCAGTCTTA TTTTTTATGCATTTT TERM 1996 1314679 - 1314664 - g 82 -3.3 -5.51402 | opp_overlap 1314678 ACATATGCAAAAAAA CGTAT TCTTTT ATACG CCGGAATCGGTCGTG Aflv_1301 1314454 - 1315647 + | Permease of the major facilitator superfamily TERM 1997 1315659 - 1315633 - T 73 -6.6 -4.16279 | GAGAGCATGTTAAAA GGCGAAGG GGTATAAAATT CCTTCGCC TTAACCAATAATAAT Aflv_1302 1317003 - 1315660 - | Trk-type K+ transport system, membrane component TERM 1998 1316553 - 1316527 - G 73 -3.6 -5.03145 | overlap 1316512 GAAGCCTTGAAAAAA CGCTTCCTTCCA CGA TGGGAAGTAACG GAGAAAATATATACC TERM 1999 1317106 - 1317117 + H 88 -3 -5.89921 | opp_overlap 1317096, overlap 1317096 AAATATTTGTATTTA CAAA ATTT TTTG TTTTTTTATTATAAT Aflv_1303 1317182 - 1317319 + | hypothetical protein TERM 2000 1317311 - 1317330 + F 80 -4.3 -5.26158 | opp_overlap 1317299 CGAGAAATGGCTTCC CCTTCAT GAAAAA ATGGAGG TTTATTTTTTGTTTA tlpC 1317381 - 1319078 + | Methyl-accepting chemotaxis protein TERM 2001 1319098 - 1319080 - T 100 -13.2 -3.89822 | opp_overlap 1319073, overlap 1319063 GATTTATCGTATAAA GCGACAGA CGA TCTGTCGC TTCAAAGTGTTGAAA TERM 2002 1319125 - 1319161 + T 100 -9.7 -5.47846 | opp_overlap 1319128 1319134, overlap 1319128 1319134 GAAAAAGTGGGGAGT CAAGAAAAAGTTCAC TTTCCTC GTGAACTTTTTCTTC TTTTCTTTTTTCCTT TERM 2003 1319128 - 1319158 + T 95 -11.4 -4.75934 | opp_overlap 1319128 1319134, overlap 1319125 1319134 AAAGTGGGGAGTCAA GAAAAAGTTCAC TTTCCTC GTGAACTTTTTC TTCTTTTCTTTTTTC TERM 2004 1319158 - 1319128 - T 81 -11.4 -3.06312 | opp_overlap 1319125 1319128 1319134, overlap 1319134 AAAGTGGGGAGTCAA GAAAAAGTTCAC TTTCCTC GTGAACTTTTTC TTCTTTTCTTTTTTC TERM 2005 1319152 - 1319134 - T 76 -4.6 -5.10461 | opp_overlap 1319128 1319125 1319134, overlap 1319128 GGGAGTCAAGAAAAA GTTCAC TTTCCTC GTGAAC TTTTTCTTCTTTTCT TERM 2006 1319134 - 1319152 + T 86 -4.6 -5.47964 | opp_overlap 1319134 1319128, overlap 1319128 1319125 GGGAGTCAAGAAAAA GTTCAC TTTCCTC GTGAAC TTTTTCTTCTTTTCT Aflv_1305 1320536 - 1319175 - | Transposase TERM 2007 1319285 - 1319324 + gT 89 -10.1 -4.13995 | gap 1, overlap 1319288 GAATCTGTACGTATG GAACTCCGCGG-TATCGT GCAAA ACGAAGTCCGTGGAGTTC TTTACTTTCTGCAAA TERM 2008 1319288 - 1319321 + gT 71 -6 -4.18676 | gap 1, overlap 1319285 TCTGTACGTATGGAA CTCCGCGG-TATCGT GCAAA ACGAAGTCCGTGGAG TTCTTTACTTTCTGC Aflv_1306 1320676 - 1320506 - | hypothetical protein TERM 2009 1320613 - 1320591 - GH 100 -13.6 -5.62288 | opp_overlap 1320591 TTAACAAAAGAAAAA CGATTTTGTC CTT GACAAAATCG TTTTTCAACAGTCTG TERM 2010 1320591 - 1320613 + gH 100 -13.6 -4.59109 | opp_overlap 1320591 TTAACAAAAGAAAAA CGATTTTGTC CTT GACAAAATCG TTTTTCAACAGTCTG TERM 2011 1320631 - 1320649 + gH 100 -13.2 -3.6445 | opp_overlap 1320624 1320635, overlap 1320623 TTTCAACAGTCTGAA GCGACAGA CGA TCTGTCGC TTTGAAAATTATTGT TERM 2012 1321013 - 1320998 - g 74 -6.2 -4.46615 | opp_overlap 1320998 GATGAGCAAGTAAAA TTGCTT GAAA AAGCAA TTGCTTCTCGTGTTG rbsB 1320698 - 1321696 + | ABC-type sugar transport system, periplasmic component TERM 2013 1322491 - 1322476 - gf 86 -3.3 -5.69262 | TTAGAAAAAGAAAAA CTAGT GCGTGA ACTAG AGTTAAAAGCGTTAC yesM 1321693 - 1323132 + | Signal transduction histidine kinase TERM 2014 1323457 - 1323437 - gf 72 -3.4 -5.03747 | AAACCTGCGAAAAAA CAACAAAT GATTG ATTTGTTA CAAAAATTGTTACAG yesN 1323056 - 1324342 + | DNA-binding response regulator (contains REC and AraC-type DNA-binding domain) TERM 2015 1324328 - 1324352 + F 100 -7.9 -5.95946 | opp_overlap 1324347, overlap 1324346 TATCGGCAAGATGTG TGCGAGCGT GCATAAA ACGTTCGCA TTTTTTTGTTGTTGG TERM 2016 1324445 - 1324465 + F 70 -3.3 -4.93898 | opp_overlap 1324454 GCGCAAATAAGTGAA GAAAGTG AAGAAAA CGCTTTC TTTTTCTCGTGGTAT TERM 2017 1324660 - 1324640 - g 73 -2.5 -5.18357 | opp_overlap 1324641 1324642, overlap 1324642 GAATCGACGAAAAAA GACGACGAC AAA ATTGTCATC GGTTTTTCGATGGAT TERM 2018 1324661 - 1324642 - g 79 -8.6 -4.2131 | opp_overlap 1324642 1324641, overlap 1324640 ATCGACGAAAAAAGA CGACGACA AAAT TGTCATCG GTTTTTCGATGGATA rbsB 1324523 - 1325605 + | ABC-type ribose transport system, periplasmic component TERM 2019 1325641 - 1325603 - f 100 -19.8 -4.19577 | opp_overlap 1325612, overlap 1325609 CAATGGCCAAAACAA TGAAAACAAGGGGCTGGC TTT GCCAGACCCTTATTTTCA ACATGATACAACGGG TERM 2020 1325635 - 1325609 - f 100 -13 -4.67123 | opp_overlap 1325612, overlap 1325603 CCAAAACAATGAAAA CAAGGGGCTGGC TTT GCCAGACCCTTA TTTTCAACATGATAC TERM 2021 1325612 - 1325632 + F 100 -12.5 -4.18506 | opp_overlap 1325609 1325603 AAACAATGAAAACAA GGGGCTGGC TTT GCCAGACCC TTATTTTCAACATGA TERM 2022 1327031 - 1327017 - g 73 -5.6 -4.41897 | AATAAATTAGCAAAA GAAGGC GTT GCCATC ATGATGATTTCTTCT rbsA 1325622 - 1327175 + | ABC-type ribose transport system, ATPase component TERM 2023 1327401 - 1327413 + G 70 -7.7 -3.68619 | CTTGTTATTGTCGCG GGTCA TAT TGACC TTTCCGTCGGTTCGA TERM 2024 1327957 - 1327945 - g 74 -4.8 -4.84359 | TCATTGCGACAAAAA CGAC ATTTG GTCG TCACGTATACGCCAT TERM 2025 1328016 - 1328036 + G 86 -9.1 -4.32857 | opp_overlap 1328015 1328012 TCTGGAATTAACATC CAACGTCAT ACG ATGATGTTG TTTGTCTTTACGGGG rbsC 1327179 - 1328348 + | ABC-type ribose transport system, permease component TERM 2026 1328346 - 1328390 + F 79 -9.7 -3.66438 | gap 1, opp_overlap 1328357, overlap 1328357 1328388 AAACGGAAAACAAGT TAGAT-AAAAAAGCTGATCG TTTTCT CGGTCAGCTTTTTTCATTTA TTGTATAATTATTTC TERM 2027 1328378 - 1328357 - f 89 -5.8 -5.38951 | opp_overlap 1328346 1328357 AAGTTAGATAAAAAA GCTGATCG TTTTCT CGGTCAGC TTTTTTCATTTATTG TERM 2028 1328357 - 1328378 + F 93 -8 -5.46129 | opp_overlap 1328357, overlap 1328346 AAGTTAGATAAAAAA GCTGATCG TTTTCT CGGTCAGC TTTTTTCATTTATTG menC 1328391 - 1329533 + | O-succinylbenzoate-CoA synthase TERM 2029 1329668 - 1329679 + G 81 -7.2 -4.72188 | overlap 1329667 TAGCGAAATTTACGC GCGC ATAT GCGC TTTCTTTTCAATTGC Aflv_1314 1329538 - 1330050 + | hypothetical protein Aflv_1315 1330115 - 1330375 + | Uncharacterized protein conserved in bacteria, Cys rich Aflv_1316 1330429 - 1330863 + | hypothetical protein TERM 2030 1330889 - 1330867 - T 93 -9.9 -4.76041 | opp_overlap 1330867 TATATTCACTAAAAA GGTGTTCCA ACTAA CGGAACACC TTAATTCATTAACAT TERM 2031 1330867 - 1330889 + T 74 -9.2 -3.45634 | opp_overlap 1330867 TATATTCACTAAAAA GGTGTTCC AACTAAC GGAACACC TTAATTCATTAACAT Aflv_1317 1331260 - 1330898 - | hypothetical protein TERM 2032 1330938 - 1330971 + g 70 -5.5 -4.41633 | gap 1, opp_overlap 1330947, overlap 1330935 1330945 ATACATAATTTTCCG CAGCAAATACCAGT TGATGTT ACTGGTGTTT-CTG TTGTTTTTAGCGCTG Aflv_1318 1331326 - 1332312 + | hypothetical protein TERM 2033 1332342 - 1332316 - T 86 -7.9 -4.96848 | opp_overlap 1332316 TGTCCGATATAAAAA GAGAGCGACGC GTCAA GCGAAGCTCTC TTATAGCGTAAAGTC Aflv_1319 1332882 - 1332343 - | hypothetical protein Aflv_1320 1333606 - 1332944 - | Acetyltransferase (GNAT) family Aflv_1321 1334474 - 1333617 - | Predicted amidohydrolase TERM 2034 1333769 - 1333759 - G 73 -8.2 -3.63744 | overlap 1333757 CCTTCCGCTAAAATA CCGC GTG GCGG GAACGGAATATCGTT TERM 2035 1333832 - 1333852 + g 80 -10.4 -3.41745 | CCCGCATAAAGTCGA CGGTTGGC AATGA GCCGACCG TTCCTGTTGTGACGA TERM 2036 1334476 - 1334488 + H 90 -3.4 -5.9667 | ACGCGCATTTTCAAC GAAG CTCAC CTTC TTTTTTTGTATTTTT bsaA 1334531 - 1335100 + | Glutathione peroxidase TERM 2037 1335087 - 1335110 + F 91 -6 -5.49234 | opp_overlap 1335087 CTTTGCTTCGCGAAA CCGTCTCT CGCTAAAA AGAGGCGG TTTTTTGTTGGATGT TERM 2038 1335483 - 1335471 - g 73 -5.5 -4.59773 | overlap 1335476 GTCGATGTGCAAAAA GCGAA CGT TCCGC CAATTGTACAAACGA cotS 1335183 - 1336295 + | Spore coat protein cotS Aflv_1324 1336271 - 1337602 + | Glycosyltransferase TERM 2039 1337605 - 1337626 + T 76 -7.3 -4.2573 | opp_overlap 1337605 1337600 GATTACGACATAAAA CTCCCAC TTACGTTT GTGGGAG TTTTGGCCTTGTTTG TERM 2040 1337626 - 1337605 - T 81 -7.3 -4.58424 | opp_overlap 1337605, overlap 1337600 GATTACGACATAAAA CTCCCAC TTACGTTT GTGGGAG TTTTGGCCTTGTTTG Aflv_1325 1338844 - 1337612 - | Glycine/D-amino acid oxidase (deaminating) TERM 2041 1339341 - 1339355 + GH 70 -7.8 -3.73224 | opp_overlap 1339341 GTCATTTTATCAAAA TCGCCG CAT CGGTGA TTTAATGGCACATGC TERM 2042 1339355 - 1339341 - gH 70 -5.6 -4.26903 | opp_overlap 1339341 GTCATTTTATCAAAA TCGCCG CAT CGGTGA TTTAATGGCACATGC TERM 2043 1340694 - 1340657 - gH 71 -4.1 -4.74706 | gap 1, opp_overlap 1340669 TTGAAGATGGAAAAA TTGTTCAACGTGGCACGC ATG ACGAGCT-CGTTGCACAA GACGGATGGTATCGG Aflv_1326 1339012 - 1340766 + | ABC-type multidrug transport system, ATPase and permease component TERM 2044 1341610 - 1341622 + GT 73 -5.5 -4.51847 | GCCCAGTTGAAATTG GCGTG TTA TACGC TTTTGTCAATTATTT Aflv_1327 1340700 - 1342529 + | ABC-type multidrug transport system, ATPase and permease component TERM 2045 1342545 - 1342565 + T 79 -10.4 -3.59262 | opp_overlap 1342539 1342538 GAGAATAAGTCTGAA CCGCCACG CTTTA TGTGGCGG TTTCACAATGTACGA Aflv_1328 1343481 - 1342555 - | Predicted Zn-dependent hydrolase of the beta-lactamase fold Aflv_1329 1343817 - 1344773 + | Extracellular ribonuclease TERM 2046 1346282 - 1346309 + F 90 -9.2 -5.00895 | opp_overlap 1346282, overlap 1346281 GATAGGCATAGGATA GGGTGTCCCA CTATTTCT TGGGACACTC TTTTTGTGTCATGAA TERM 2047 1346356 - 1346346 - f 81 -2.6 -5.65927 | opp_overlap 1346346 CATTTAAATAAAAAA TTTT CAA AAAA ATGTTGCATTTCCGC TERM 2048 1346571 - 1346556 - g 71 -3.2 -4.92777 | AACACGAATGAAAAA CGCG GGCCATGT CGCG GGAAAACAAATATTA TERM 2049 1346736 - 1346755 + G 72 -8 -3.83868 | overlap 1346732 AAATGTTCCACTTGA GTTGAAAT TTCT ATTTCAAC TTGCTTTTGTTGGTG TERM 2050 1347727 - 1347716 - g 73 -5.8 -4.56367 | opp_overlap 1347716 CAGCTTATAAACAAA CGAC AACA GTCG TTTCATCTCGTTCGT nrgA 1346428 - 1347747 + | Ammonia permease TERM 2051 1347823 - 1347843 + G 100 -12.7 -4.5477 | opp_overlap 1347823 1347827 TATGTCAGAATTGAA GCAACTTCA CGA TGAAGTTGC TTTTCTCCTCTCTTC TERM 2052 1347843 - 1347823 - g 93 -12.7 -3.2375 | opp_overlap 1347823, overlap 1347827 TATGTCAGAATTGAA GCAACTTCA CGA TGAAGTTGC TTTTCTCCTCTCTTC Aflv_1333 1347761 - 1348789 + | Predicted nucleotidyltransferase DUF294 family Aflv_1334 1348790 - 1349512 + | 3'-5' exonuclease related protein TERM 2053 1349499 - 1349524 + F 100 -10.5 -5.40072 | TATATGCATTACTTA GTCAATGTTCG TAAA CGAGCGTTGAC TTTTTTTGCGAAAAA Aflv_1335 1349600 - 1349905 + | Transcriptional regulator, ArsR family TERM 2054 1350428 - 1350452 + G 77 -10.7 -2.82516 | opp_overlap 1350433 1350436, overlap 1350432 1350433 1350446 TAGAAGGACTAGGGA TGGAACGAGCG CGT CGCTCGCTTCA TATGCTGCTGAAACA TERM 2055 1350447 - 1350433 - g 84 -11.4 -3.08464 | opp_overlap 1350433 1350432 1350428 1350446, overlap 1350436 GGACTAGGGATGGAA CGAGCG CGT CGCTCG CTTCATATGCTGCTG TERM 2056 1350433 - 1350447 + G 80 -11.4 -2.57944 | opp_overlap 1350433 1350436, overlap 1350432 1350428 1350446 GGACTAGGGATGGAA CGAGCG CGT CGCTCG CTTCATATGCTGCTG TERM 2057 1351958 - 1352012 + G 95 -12.4 -3.39288 | opp_overlap 1351974, overlap 1351974 GCATACTGAGCTTAT TCATTTTATGGGAAAAGCGCACGATT TAA AGTTGTGCGCTTTTCTAAAAAAAGGA TATTATTCAGAAATA Aflv_1336 1349917 - 1351986 + | Cation transport ATPase, contains heavy metal-binding domain TERM 2058 1351974 - 1351996 + F 91 -10.6 -4.36914 | opp_overlap 1351974, overlap 1351958 CATTTTATGGGAAAA GCGCACGATT TAA AGTTGTGCGC TTTTCTAAAAAAAGG TERM 2059 1351996 - 1351974 - f 71 -6.2 -4.14243 | opp_overlap 1351974 1351958 CATTTTATGGGAAAA GCGCACGATT TAA AGTTGTGCGC TTTTCTAAAAAAAGG Aflv_1337 1352096 - 1354021 + | Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) TERM 2060 1354000 - 1354034 + F 79 -5 -5.09204 | opp_overlap 1354007, overlap 1354007 TGAACAACATAATCA ATCGAAAGAGGCGCTG CAT TAGCGTCTCTTTTCAC TTTTTGTTCACATAT TERM 2061 1354007 - 1354027 + F 91 -9.7 -4.52505 | opp_overlap 1354007, overlap 1354000 CATAATCAATCGAAA GAGGCGCTG CAT TAGCGTCTC TTTTCACTTTTTGTT TERM 2062 1354717 - 1354692 - g 82 -3.3 -5.49729 | overlap 1354697 AATGATCGAAAAAAA TGAAATAACGA ATGC TCGCTATGCCA TTCATTTCATGTATG nosD 1354114 - 1355451 + | Periplasmic copper-binding protein NosD nosL 1355435 - 1355881 + | Predicted lipoprotein involved in nitrous oxide reduction, contains heavy metal-binding domain nosY 1355878 - 1356687 + | ABC-type transport system involved in multi-copper enzyme maturation, permease component TERM 2063 1356731 - 1356741 + GF 78 -4 -5.0916 | opp_overlap 1356731 GAACAAAATAAAGTA GAAA ACA TTTC TTTTTCTGTTCAAGA nosF 1356680 - 1357381 + | ABC-type copper transport system, ATPase component TERM 2064 1357386 - 1357404 + GF 100 -8.2 -5.26875 | opp_overlap 1357386 TGTCATACTGAAAAA GTAAGCAA ATA TTGCTTGC TTTTTTCATTCGAAG TERM 2065 1357404 - 1357386 - gf 80 -6 -4.70659 | opp_overlap 1357386 TGTCATACTGAAAAA GTAAGCAA ATA TTGCTTGC TTTTTTCATTCGAAG Aflv_1342 1357350 - 1358057 + | Phosphoglycerate mutase Aflv_1343 1358054 - 1358581 + | Nuclease of thermonuclease family TERM 2066 1358591 - 1358609 + T 78 -7.4 -4.34402 | opp_overlap 1358591 TCGTAAATGTGAAAA GGGCTG GATGAAA CAGCCC TTTTAATGTGCGAGC TERM 2067 1358609 - 1358591 - T 76 -7.4 -4.24002 | opp_overlap 1358591 TCGTAAATGTGAAAA GGGCTG GATGAAA CAGCCC TTTTAATGTGCGAGC TERM 2068 1358616 - 1358636 + T 72 -8.3 -3.50639 | overlap 1358614 1358618 AAACAGCCCTTTTAA TGTGCGAGC ATC GCTTGCATA TCTTCTTCTACATTA TERM 2069 1358618 - 1358634 + T 70 -8.7 -3.3161 | overlap 1358616 1358614 ACAGCCCTTTTAATG TGCGAGC ATC GCTTGCA TATCTTCTTCTACAT Aflv_1344 1359928 - 1358612 - | Iron-sulfur protein of HCP family TERM 2070 1360190 - 1360211 + H 100 -5.9 -5.75538 | opp_overlap 1360190 TTTTCAGTATGTAAA CTAGTCG ATTCTGTC CGACTAG TTTTTATTTTTTAGG thiM 1360235 - 1361029 + | Hydroxyethylthiazole kinase, sugar kinase family TERM 2071 1361403 - 1361387 - g 89 -3.5 -5.66868 | AATGAAGTAAAAAAA GCGCTTG CTG CTTGCGC CGATTATGTTGGATT thiE 1361030 - 1361683 + | Thiamine monophosphate synthase TERM 2072 1361661 - 1361701 + F 74 -9.2 -3.49668 | opp_overlap 1361666 1361672 1361674, overlap 1361672 AGATGGTCATGCGTG CAAAACAAAAAGGCGACA GGTGA TGTCGTCTTTTTCCTTTG TTCTGTGCAGGATTT TERM 2073 1361672 - 1361690 + F 85 -6.7 -5.10877 | opp_overlap 1361672 1361666 1361674, overlap 1361661 CGTGCAAAACAAAAA GGCGACA GGTGA TGTCGTC TTTTTCCTTTGTTCT TERM 2074 1361690 - 1361672 - f 86 -4.5 -5.45802 | opp_overlap 1361661 1361672, overlap 1361666 1361674 CGTGCAAAACAAAAA GGCGACA GGTGA TGTCGTC TTTTTCCTTTGTTCT Aflv_1347 1361726 - 1362532 + | Enoyl-CoA hydratase/carnithine racemase TERM 2075 1363260 - 1363274 + G 70 -7.8 -3.66844 | overlap 1363263 1363264 ATGTCATGGGGCATG GTGTCG CAT CGGCAC TTGTTGCGATGTCGA rsbU 1362629 - 1363765 + | Response regulator with PP2C-type protein phosphatase output domain (REC-PP2C domains) TERM 2076 1363773 - 1363791 + T 71 -5.2 -4.55209 | opp_overlap 1363773 TAAAATAGCAGAAAA GGGGCT CTATTTC GGCCCC TTTATTTAATGTCTA rsbV 1364086 - 1363793 - | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor, stand-alone STAS domain) rsbW 1364475 - 1364083 - | Anti-sigma regulatory factor (Ser/Thr protein kinase) Aflv_1351 1364728 - 1364453 - | hypothetical protein hemAT 1366173 - 1364806 - | Methyl-accepting chemotaxis protein TERM 2077 1366607 - 1366594 - g 73 -5.3 -4.67982 | GTTCACCCAACAAAA TGTTG TACA CAACA TCAAATGCAAACAAC Aflv_1353 1366546 - 1366779 + | hypothetical protein TERM 2078 1366780 - 1366800 + F 100 -12.6 -5.24129 | opp_overlap 1366785, overlap 1366795 CCGAGACCATTTTAA CCGAAGGC AATTC GCCTTCGG TTTTTTGTCGAAAAA Aflv_1354 1366904 - 1367200 + | Cell division initiation protein TERM 2079 1367678 - 1367701 + G 100 -10.4 -5.61881 | gap 1 TGATTCATGGCATCA CTCTCCTGCAC AGC GT-CAGGAGAG TTTTTGTTTTTCGGG Aflv_1355 1367669 - 1369453 + | Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) Aflv_1356 1369454 - 1370593 + | Predicted N6-adenine-specific DNA methylase TERM 2080 1370593 - 1370621 + F 100 -12.6 -4.21768 | opp_overlap 1370599, overlap 1370599 TCCGCCACGTTCTTA GAAAAAGCTGTC TCGCT GGCAGCTTTTTC TTTTCAACTTCATTG TERM 2081 1370599 - 1370615 + F 89 -5.8 -5.46706 | opp_overlap 1370599, overlap 1370593 ACGTTCTTAGAAAAA GCTGTC TCGCT GGCAGC TTTTTCTTTTCAACT TERM 2082 1372453 - 1372463 + G 71 -6.8 -4.09685 | opp_overlap 1372453 CGAAGCGGAAGCAGA CGGA AAA TCCG TTTTGGGAAGTGGAC Aflv_1357 1370709 - 1372637 + | Rad3-related DNA helicase TERM 2083 1373689 - 1373699 + G 71 -4 -4.83169 | CATTTTGTTGACGTT TCAT TGG ATGA TTTTTATCGCGCAAT TERM 2084 1373870 - 1373860 - g 75 -5.4 -4.86621 | opp_overlap 1373860 ATTTGGAATGAAAAA TACG AGA CGTA TTTAGGTGTCCGTCC TERM 2085 1374092 - 1374075 - g 70 -7.1 -3.86524 | AGAGTGGCTTACAAA CCATATT CACC AATATGG AAAGACGAAAAAGCC Aflv_1358 1372690 - 1374204 + | Zn-dependent carboxypeptidase (thermostable) TERM 2086 1374209 - 1374224 + T 100 -11.8 -5.40474 | opp_overlap 1374209 ATCGATTATAAAAAA CCGGGC AAAT GCCCGG TTTTTTTACCAAAGT TERM 2087 1374224 - 1374209 - T 100 -11.8 -5.31877 | opp_overlap 1374209 ATCGATTATAAAAAA CCGGGC AAAT GCCCGG TTTTTTTACCAAAGT ctaD 1375879 - 1374230 - | Cytochrome c oxidase (b(o/a)3-type) chain I Aflv_1360 1376349 - 1375876 - | Cytochrome c oxidase (b(o/a)3-type) chain II Aflv_1361 1376949 - 1378178 + | Transposase TERM 2088 1378415 - 1378372 - T 73 -5.6 -4.5954 | gap 1, opp_overlap 1378372 1378385, overlap 1378367 TTACATCATACAAAA CAATTTGCGAAATGAAACG CTTTCTT CGTAT-ATTTCACAAATTG TTCATTCGTTACTTT TERM 2089 1378566 - 1378545 - T 100 -9.5 -5.95286 | opp_overlap 1378545 1378548 ATGAAAAATAAAAAA GAAGCTTAC AAAC GCAAGCTTC TCTTCGCACTTATTC cheX 1379058 - 1378576 - | CheC TERM 2090 1379195 - 1379222 + H 86 -7.8 -4.91873 | gap 1, opp_overlap 1379195, overlap 1379216 TTCAAAACGTCGAAA GCTTTCCTC-CTA TTG TGGTGGGGAAAGC TTTTTCCTTCATATG bcsA 1379273 - 1380355 + | Naringenin-chalcone synthase Aflv_1364 1380337 - 1380858 + | hypothetical protein TERM 2091 1380839 - 1380868 + F 90 -8.7 -4.9792 | opp_overlap 1380844, overlap 1380846 AGGCGCTACGTTTAT TAAAATCTCCCCA TAAG TAGGGGGATTTTA TTTTTCTGTGAACTA TERM 2092 1380846 - 1380863 + F 89 -5.5 -5.38839 | opp_overlap 1380844, overlap 1380839 ACGTTTATTAAAATC TCCCCAT AAGT AGGGGGA TTTTATTTTTCTGTG TERM 2093 1380961 - 1380947 - g 76 -2.8 -5.3658 | opp_overlap 1380947 1380948, overlap 1380948 ATGACAAAAACAAAA TCATTG CAA CAATGG TTATATCGTCTCATC Aflv_1365 1380917 - 1384549 + | Predicted GTPase Aflv_1366 1384542 - 1384814 + | hypothetical protein Aflv_1367 1384816 - 1385016 + | hypothetical protein TERM 2094 1385033 - 1385020 - f 71 -9.5 -2.84566 | opp_overlap 1385020, overlap 1385017 AATATTCGATAAGGA GGCGC ACAT GCGCC TTTTCTTATGAGATG TERM 2095 1385020 - 1385033 + F 93 -9.5 -4.78237 | opp_overlap 1385020 1385017 AATATTCGATAAGGA GGCGC ACAT GCGCC TTTTCTTATGAGATG Aflv_1368 1385046 - 1385588 + | Thiol:disulfide interchange protein (thioredoxin) TERM 2096 1385586 - 1385603 + G 100 -9.9 -5.53079 | opp_overlap 1385586 GAAAAATGGGGAAAA TAGCCGA AGAG TCGGCTA TTTTTTGTATATTTT TERM 2097 1385603 - 1385586 - g 88 -9.9 -4.20883 | opp_overlap 1385586 GAAAAATGGGGAAAA TAGCCGA AGAG TCGGCTA TTTTTTGTATATTTT Aflv_1369 1385576 - 1385800 + | hypothetical protein sspN 1385836 - 1385979 + | Small acid-soluble spore protein TERM 2098 1385977 - 1385999 + F 79 -9.2 -3.85909 | opp_overlap 1385980, overlap 1385980 CAAACGAAGGGCGAA TAAGGGCG CAAATGT CGCCCTTA TTTAAGTTTACATAA TERM 2099 1386260 - 1386249 - g 85 -4.4 -5.49729 | AATCAGGGAAAAAAA TCAC CGAC GTGA AGAAGCGATCGAAGC Aflv_1371 1386106 - 1386333 + | Small acid-soluble spore protein (thioredoxin-like protein), tlp TERM 2100 1386334 - 1386353 + F 100 -4.9 -6.31682 | opp_overlap 1386336, overlap 1386336 GGGTACGAATTGTAA AAGCCGC TTATGT GCGGCTC TTTTTTTTTGCTTTT TERM 2101 1386336 - 1386351 + F 83 -7.5 -4.74676 | opp_overlap 1386336, overlap 1386334 GTACGAATTGTAAAA GCCGC TTATGT GCGGC TCTTTTTTTTTGCTT TERM 2102 1386351 - 1386336 - f 76 -7.5 -4.20696 | opp_overlap 1386334 1386336 GTACGAATTGTAAAA GCCGC TTATGT GCGGC TCTTTTTTTTTGCTT TERM 2103 1386590 - 1386578 - g 72 -7.7 -3.83188 | overlap 1386576 GATATGGAGAAAAGA GGGAT TGT ATCCC CAGTTATTGATTTAC Aflv_1372 1386425 - 1386844 + | Thioesterase family protein TERM 2104 1386840 - 1386868 + T 93 -14 -3.0094 | opp_overlap 1386840, overlap 1386842 1386847 AGCGGGCAAAAAAAA GATAAAGGCGGG AAAAA CCCGCTTTTATC TATATGTGAATACCG TERM 2105 1386868 - 1386840 - T 100 -11.8 -5.75945 | opp_overlap 1386840 1386842 1386847 AGCGGGCAAAAAAAA GATAAAGGCGGG AAAAA CCCGCTTTTATC TATATGTGAATACCG TERM 2106 1386842 - 1386866 + T 78 -10.8 -3.05993 | opp_overlap 1386840, overlap 1386840 1386847 CGGGCAAAAAAAAGA TAAAGGCGGG AAAAA CCCGCTTTTA TCTATATGTGAATAC TERM 2107 1386847 - 1386861 + T 88 -8.5 -4.6645 | opp_overlap 1386840, overlap 1386842 1386840 AAAAAAAAGATAAAG GCGGG AAAAA CCCGC TTTTATCTATATGTG Aflv_1373 1387163 - 1386864 - | hypothetical protein Aflv_1374 1387472 - 1388410 + | Metal ion transporter TERM 2108 1388414 - 1388431 + F 100 -7.7 -5.80248 | opp_overlap 1388414 1388417 CGTTACTTTTAGCAA GGACGGT GTTA ACCGTTC TTTTTTTATATGTTA TERM 2109 1388753 - 1388769 + G 70 -8 -3.73068 | opp_overlap 1388752 GGAAAAAAAGATTAT GCAGGT TGTTT ACCTGC TTGTTCGATTACAAA TERM 2110 1389198 - 1389178 - g 79 -3.3 -5.29385 | overlap 1389179 1389180 1389182 AATTCAATTAAAAAA TGGACATAT GCT ATATGCCGA TCGTGTCGTCATCGC Aflv_1375 1388555 - 1389994 + | Uncharacterized FAD-dependent dehydrogenase TERM 2111 1389991 - 1390011 + F 100 -9.8 -5.5074 | opp_overlap 1389994 TGTCGAAACGTCTAA CTAGCGAA GGTTG TTCGCTAG TTTTTTGTTAACTTA bioB 1390071 - 1391090 + | Biotin synthetase TERM 2112 1391079 - 1391128 + F 84 -12.5 -2.93616 | gap 1, opp_overlap 1391095, overlap 1391079 1391095 TTTGCTCCAGCATCT TATGCGAGATAAAAAAGCCGACGT TGT GTGTCGGCTTTTTTATCT-GTACA TATACTATTACTAAT TERM 2113 1391079 - 1391130 + F 90 -13.4 -2.79209 | gap 1, opp_overlap 1391095, overlap 1391079 1391095 TTTGCTCCAGCATCT TATGCG-AGATAAAAAAGCCGACGT TGT GTGTCGGCTTTTTTATCTGTACATA TACTATTACTAATTA TERM 2114 1391095 - 1391113 + F 95 -8.8 -5.4251 | opp_overlap 1391095, overlap 1391079 1391079 ATGCGAGATAAAAAA GCCGACGT TGT GTGTCGGC TTTTTTATCTGTACA TERM 2115 1391113 - 1391095 - f 93 -7.4 -5.37043 | opp_overlap 1391079 1391079 1391095 ATGCGAGATAAAAAA GCCGAC GTTGTGT GTCGGC TTTTTTATCTGTACA Aflv_1377 1391601 - 1391774 + | hypothetical protein TERM 2116 1391777 - 1391793 + F 100 -7.2 -5.63103 | opp_overlap 1391772 1391777 AATTGATGAATAAAA CGGCGG ATGTC CCGTCG TTTTTTTGCTTGAAA TERM 2117 1391793 - 1391777 - f 75 -5.7 -4.731 | opp_overlap 1391777, overlap 1391772 AATTGATGAATAAAA CGGCGGA TGT CCCGTCG TTTTTTTGCTTGAAA TERM 2118 1391812 - 1391822 + G 93 -4 -5.84381 | TTTTGCTTGAAATTT GAAA CAT TTTC TTTTTTTATTCGTAC TERM 2119 1392255 - 1392238 - g 74 -4.9 -4.80882 | gap 1, overlap 1392239 1392240 ACTCGATATTAAAAA TGCTGTCG ATC CGACAG-A TGAAGATTACATTCG TERM 2120 1392254 - 1392240 - g 71 -10 -2.68202 | overlap 1392238 1392239 TCGATATTAAAAATG CTGTCG ATC CGACAG ATGAAGATTACATTC spo0M 1391810 - 1392643 + | Sporulation control protein TERM 2121 1392672 - 1392655 - f 93 -9.9 -5.12707 | opp_overlap 1392655 TTAAAGCTTAAAAAA GATTGGG GATT CCCAATC TTTTTTATTATGTCG TERM 2122 1392655 - 1392672 + F 100 -9.9 -5.60689 | opp_overlap 1392655 TTAAAGCTTAAAAAA GATTGGG GATT CCCAATC TTTTTTATTATGTCG Aflv_1379 1392757 - 1393107 + | hypothetical protein TERM 2123 1393184 - 1393211 + T 100 -4.8 -5.75822 | opp_overlap 1393186 1393187, overlap 1393187 TAGAGTATGATAAAA AATTCCCCTTGT GCGT GCAAGGGGATTA TTTTTTTCGTTTATC TERM 2124 1393209 - 1393186 - T 89 -6.7 -5.32882 | opp_overlap 1393184 1393187, overlap 1393187 GAGTATGATAAAAAA TTCCCCTTG TGCGTG CAAGGGGAT TATTTTTTTCGTTTA TERM 2125 1393208 - 1393187 - T 80 -10.2 -3.78644 | opp_overlap 1393187 1393184, overlap 1393186 AGTATGATAAAAAAT TCCCCTTG TGCGTG CAAGGGGA TTATTTTTTTCGTTT TERM 2126 1393187 - 1393208 + T 93 -10.9 -4.90519 | opp_overlap 1393186 1393187, overlap 1393184 AGTATGATAAAAAAT TCCCCTTGT GCGT GCAAGGGGA TTATTTTTTTCGTTT Aflv_1380 1393385 - 1393209 - | hypothetical protein TERM 2127 1393444 - 1393458 + G 80 -2.8 -5.57396 | overlap 1393436 TGATTTCTTCCATCG TCGGAA TTG TTGCGA TTTTTTGTTCCTTGT TERM 2128 1393753 - 1393736 - g 73 -2.7 -5.1167 | overlap 1393730 AAGTGAAGATAAAAA GGTTTTA TACG TGAAACC AAAGTATTTTCGCAA Aflv_1381 1393404 - 1393778 + | hypothetical protein TERM 2129 1393794 - 1393780 - f 88 -11.4 -3.60818 | opp_overlap 1393780 GCAAAATGTCGTAAA GAGGGG AAT CCCCTC TTTTTTTATACATGA TERM 2130 1393780 - 1393794 + F 100 -11.4 -5.64274 | opp_overlap 1393780 GCAAAATGTCGTAAA GAGGGG AAT CCCCTC TTTTTTTATACATGA deoD 1393884 - 1394588 + | Purine-nucleoside phosphorylase TERM 2131 1394642 - 1394598 - f 100 -10.2 -5.2166 | gap 1, opp_overlap 1394599 1394602 1394606, overlap 1394599 CAATAAGCTAAAAAA TGAAGAAAGCTCCTGCGAA TCATTTTC CTCGC-GGAGCTTTCTTCT ATTCGTGAGGGAGAA TERM 2132 1394641 - 1394599 - f 95 -13.7 -3.71369 | gap 1, opp_overlap 1394599 1394602 1394606, overlap 1394598 AATAAGCTAAAAAAT GAAGAAAGCTCCTGCGAA TCATTTTC CTCGC-GGAGCTTTCTTC TATTCGTGAGGGAGA TERM 2133 1394599 - 1394641 + F 91 -13 -3.13403 | gap 1, opp_overlap 1394598 1394599, overlap 1394602 1394606 AATAAGCTAAAAAAT GAAGAAAGCTCCTGCGA ATCATTTTCC TCGC-GGAGCTTTCTTC TATTCGTGAGGGAGA TERM 2134 1394602 - 1394638 + F 76 -8.9 -3.71284 | gap 1, opp_overlap 1394599 1394598, overlap 1394599 1394606 AAGCTAAAAAATGAA GAAAGCTCCTGCGA ATCATTTTCC TCGC-GGAGCTTTC TTCTATTCGTGAGGG Aflv_1383 1394661 - 1395464 + | D-alanyl-D-alanine carboxypeptidase Aflv_1384 1395799 - 1395467 - | hypothetical protein TERM 2135 1395875 - 1395849 - R 100 -13.8 -4.86033 | opp_overlap 1395849 AAATTTCGACAAAAA GGGAGCTACTGT GTG AAAGTAGCTCCC TTTTTATAACACAAT TERM 2136 1395849 - 1395875 + r 100 -13.8 -4.83169 | opp_overlap 1395849 AAATTTCGACAAAAA GGGAGCTACTGT GTG AAAGTAGCTCCC TTTTTATAACACAAT Aflv_1385 1397195 - 1395879 - | Predicted permease Aflv_1386 1397418 - 1398296 + | Predicted Co/Zn/Cd cation transporter Aflv_1387 1398321 - 1399220 + | Predicted permease TERM 2137 1399221 - 1399241 + T 100 -9 -6.07627 | opp_overlap 1399221 TCATTAAACGTATAA CGTCTGTC GGTGA GACAGGCG TTTTTTTTTACCCAT TERM 2138 1399564 - 1399595 + T 100 -14.6 -3.21703 | opp_overlap 1399569, overlap 1399569 GTGCAGCTTGGTGCT AAAAAGCAAGAGGG GGCT CCCTCTTGCTTTTA TATATGTTTCCATTT TERM 2139 1399590 - 1399569 - T 100 -14.5 -4.56597 | opp_overlap 1399569 1399564 GCTTGGTGCTAAAAA GCAAGAGGG GGCT CCCTCTTGC TTTTATATATGTTTC TERM 2140 1399569 - 1399590 + T 100 -14.5 -4.70534 | opp_overlap 1399569, overlap 1399564 GCTTGGTGCTAAAAA GCAAGAGGG GGCT CCCTCTTGC TTTTATATATGTTTC Aflv_1388 1400933 - 1399593 - | Na+-driven multidrug efflux pump TERM 2141 1400205 - 1400178 - G 70 -2.6 -5.00884 | ACTCGTTTCAAAAAA GATCGCTAGTCC AATA GGTATACCGATC AAAATTAATTGCTTC TERM 2142 1400889 - 1400902 + g 86 -2.5 -5.79595 | AGGGAATAGTATATG TAAAA ACTG TTTTA TTTTTTCTTTTAACG TERM 2143 1401273 - 1401283 + G 79 -3.2 -5.28176 | CAGGTGCGATTTCGT CGTT ACA AGCG TTTTTTATGAGTACA TERM 2144 1401956 - 1401938 - g 80 -10.4 -3.52073 | GCCGCAACAGCAGAA GTTTCACA TCC TGTGAAAC AAGGGTTAATTCAAA alsT 1401080 - 1402504 + | Na+/alanine symporter TERM 2145 1402543 - 1402496 - T 70 -2.7 -5.12707 | opp_overlap 1402508, overlap 1402508 GTAAACTTGAAAAAA GAAGCGTAAAAATGAGGCTGC GTGATT GCAGCCTCATTTTTTTGAATA AGCAGGTAGTTCAAT TERM 2146 1402531 - 1402508 - T 100 -12.5 -4.7153 | opp_overlap 1402508, overlap 1402496 AAAGAAGCGTAAAAA TGAGGCTGC GTGATT GCAGCCTCA TTTTTTTGAATAAGC TERM 2147 1402508 - 1402531 + T 100 -13.2 -5.47218 | opp_overlap 1402508 1402496 AAAGAAGCGTAAAAA TGAGGCTGCG TGAT TGCAGCCTCA TTTTTTTGAATAAGC Aflv_1390 1403782 - 1402529 - | Signal transduction histidine kinase TERM 2148 1403631 - 1403647 + g 89 -3.7 -5.68039 | overlap 1403631 GTTTCAATCGTTGGA GAAGGAG CCT TTCTTTC TTTTTTTATGACTTT TERM 2149 1403631 - 1403643 + g 81 -4.1 -5.27709 | overlap 1403631 GTTTCAATCGTTGGA GAAGG AGC CTTTC TTTCTTTTTTTATGA Aflv_1391 1403954 - 1404160 + | hypothetical protein TERM 2150 1404601 - 1404611 + G 85 -4 -5.46657 | AACTTAGTTTTAGAC TTGT TGC ACAA TTTTTTCTTAGAATG Aflv_1392 1404142 - 1405071 + | Mn-containing catalase TERM 2151 1405083 - 1405095 + F 74 -4.8 -4.66535 | opp_overlap 1405075, overlap 1405075 GTAACAAGCTGTGCC GAGC GCATA GCTC TTTCTTTTGCCCCTT ilvA 1405242 - 1406450 + | Threonine dehydratase Aflv_1394 1406550 - 1406765 + | hypothetical protein Aflv_1395 1406780 - 1406989 + | hypothetical protein TERM 2152 1406981 - 1406995 + F 100 -5.6 -5.85011 | opp_overlap 1406981, overlap 1406973 TATTTTACAGAAAAA GCGGTG TAA TGCCGC TTTTTTTCATTTTTA TERM 2153 1406995 - 1406981 - f 71 -4.2 -4.9792 | opp_overlap 1406981 1406973 TATTTTACAGAAAAA GCGG TGTAATG CCGC TTTTTTTCATTTTTA Aflv_1396 1406989 - 1407723 + | hypothetical protein TERM 2154 1407743 - 1407727 - f 77 -5 -4.93968 | opp_overlap 1407727, overlap 1407721 AGTCATAACTAAAAA GCTGCC TTTTG GGCGGC TTTTTTAATTTAAAG TERM 2155 1407727 - 1407743 + F 93 -7.9 -5.37593 | opp_overlap 1407721 1407727 AGTCATAACTAAAAA GCTGCCT TTT GGGCGGC TTTTTTAATTTAAAG TERM 2156 1407791 - 1407820 + F 70 -5.8 -4.35017 | gap 1, opp_overlap 1407791 TCAGGTTAGTTAGAA GCACTCGG-TC TGTTCTTTT GAGCCGAGTGC TTTATTCAATTTTTA Aflv_1397 1407913 - 1408308 + | Transcriptional regulator (GntR family) Aflv_1398 1408295 - 1409194 + | ABC-type multidrug transport system, ATPase component TERM 2157 1410463 - 1410443 - gf 87 -6.1 -5.1101 | CTATGACTTAAAAAA TGGAAAACG AGT CGTTCGCCA ATATACCGTTCCAAT Aflv_1399 1409148 - 1411076 + | ABC-type multidrug transport system, permease component TERM 2158 1411096 - 1411079 - f 73 -7 -4.25283 | opp_overlap 1411079 ATTCGTTGATTAAAA GACCTG CACGTT CAGGTC TTTTTCTTTGTTGGC TERM 2159 1411079 - 1411096 + F 93 -7 -5.47159 | opp_overlap 1411079 ATTCGTTGATTAAAA GACCTG CACGTT CAGGTC TTTTTCTTTGTTGGC TERM 2160 1412518 - 1412540 + G 74 -10 -3.12351 | opp_overlap 1412521, overlap 1412521 CGACAGGTAATGAAG TAACTGTTCA ATC TGAACAGTTG TTAGATGTGGCACAA TERM 2161 1412521 - 1412537 + G 78 -9.5 -3.70773 | opp_overlap 1412521, overlap 1412518 CAGGTAATGAAGTAA CTGTTCA ATC TGAACAG TTGTTAGATGTGGCA TERM 2162 1412537 - 1412521 - g 76 -9.5 -3.46081 | opp_overlap 1412521 1412518 CAGGTAATGAAGTAA CTGTTCA ATC TGAACAG TTGTTAGATGTGGCA Aflv_1400 1411176 - 1413641 + | Peptidase U32 family Aflv_1401 1413665 - 1414285 + | Thioredoxin TERM 2163 1414366 - 1414414 + F 91 -8.2 -5.19275 | opp_overlap 1414357 CAATGATCGTTATAA GCTGCACCTTTGTCGGGTTCAT CTTAT AAGGACTTGACAGAAGTGTAGC TTTTGTTTTATGAGT cspB 1414431 - 1414676 + | Cold shock protein, CspA family TERM 2164 1414716 - 1414690 - f 83 -12.3 -2.6836 | opp_overlap 1414690, overlap 1414687 1414686 AAATAGTCAAACGTA CGGGATCTCGC TTTTC GTGAGATCCCG TTTTTATATGCAACA TERM 2165 1414690 - 1414716 + F 100 -14.5 -4.96848 | opp_overlap 1414687 1414686 1414690 AAATAGTCAAACGTA CGGGATCTCGC TTTTC GTGAGATCCCG TTTTTATATGCAACA TERM 2166 1414812 - 1414830 + F 100 -10.3 -5.44119 | TTTTGTTTGTTCGGA CACGCTC TTGAT GAGCGTG TTTTTTTAAGATAAG TERM 2167 1414972 - 1414957 - f 72 -9 -3.36878 | opp_overlap 1414951 GTTACCCACGCAGAA CCAAGC GACT GCTTGG TTCGAGCTCTCCTCG TERM 2168 1415069 - 1415079 + F 84 -8.2 -4.71426 | overlap 1415038 TTAGGCGAAATCGGG GCGC TTT GCGC TTTTCTTAATAAAAA TERM 2169 1415932 - 1415922 - g 71 -6.8 -4.13945 | opp_overlap 1415922 1415920 ACGTTTATGCCAAAA CCGA TTT TCGG TATTAATGGTTCCGG glnA 1415193 - 1416554 + | Glutamine synthetase TERM 2170 1416557 - 1416574 + F 89 -9.1 -4.80396 | opp_overlap 1416557 GTCGAAATTTTAAAA GCGAGCG ATGA TGCTCGC TTTTTGCATGTTTTC TERM 2171 1416574 - 1416557 - f 82 -8.4 -4.24002 | opp_overlap 1416557 GTCGAAATTTTAAAA GCGAGC GATGAT GCTCGC TTTTTGCATGTTTTC TERM 2172 1416926 - 1416911 - g 84 -3.9 -5.48825 | opp_overlap 1416911 GATGAGCTAAAAAAA CGGGC AAATCA ACCCG TTCAATTCACCAATT Aflv_1404 1416617 - 1417444 + | Lysophospholipase L1-like esterase Aflv_1405 1417444 - 1418355 + | ABC-type multidrug transport system, ATPase component Aflv_1406 1418348 - 1419328 + | ABC-type multidrug transport system, permease component Aflv_1407 1419268 - 1419984 + | NUDIX family hydrolase Aflv_1408 1419963 - 1420922 + | Metallo-beta-lactamase family protein TERM 2173 1421548 - 1421521 - g 75 -2 -5.33124 | gap 1, overlap 1421522 1421523 AACAACAAAACAAAA GTTTGCCGATTTA TTC TGATTCGGC-AAC AGCTATAAAATGGGT Aflv_1409 1421025 - 1421735 + | Predicted double-stranded RNA/RNA-DNA hybrid binding protein TERM 2174 1421738 - 1421760 + T 88 -8.4 -4.7173 | opp_overlap 1421733 1421738 TGGACGAAAGTAAAA GGAGAGGGAT ATT AACCTTCTCC TTTTTGCATGTCATC TERM 2175 1421760 - 1421738 - T 77 -6.2 -4.58773 | opp_overlap 1421738, overlap 1421733 TGGACGAAAGTAAAA GGAGAGGGAT ATT AACCTTCTCC TTTTTGCATGTCATC Aflv_1410 1422855 - 1421749 - | GTPase, G3E family TERM 2176 1423025 - 1423053 + H 100 -14.7 -5.10933 | CATAAGCGCTCATAT GCCGCAAGGAA GGTACTG TTCCTTGCGGC TTTTATTTTCAGTCC TERM 2177 1423066 - 1423091 + H 95 -9.1 -5.4505 | gap 1 GGCTTTTATTTTCAG TCCGCAAAGGGA TCT TCTCTT-GCGGA TTTTTTATTGAAAGG Aflv_1411 1423099 - 1423260 + | hypothetical protein TERM 2178 1423364 - 1423386 + F 100 -11.4 -5.63517 | opp_overlap 1423364 AGTTTTACGCGACAA GAGTTGATCT TAT AGATCAGCTC TTTTTTCTTTACAAA TERM 2179 1423386 - 1423364 - f 72 -9.2 -3.32963 | opp_overlap 1423364 AGTTTTACGCGACAA GAGTTGATCT TAT AGATCAGCTC TTTTTTCTTTACAAA Aflv_1412 1423465 - 1423794 + | Transcriptional regulator, ArsR family Aflv_1413 1423813 - 1425111 + | Arsenical pump membrane protein Aflv_1414 1425127 - 1425543 + | Protein phosphatase, low molecular weight phosphatase family TERM 2180 1425622 - 1425657 + T 95 -14.9 -2.89564 | opp_overlap 1425622 1425625 1425631, overlap 1425625 1425630 ATGATGTATAATGAA GAACACAAACGAGGA ACTTTA TCCTCGCTTGTGTTC TCTGTCAACTAAAAG TERM 2181 1425657 - 1425622 - T 100 -17.1 -3.46212 | opp_overlap 1425622 1425625 1425630, overlap 1425625 1425631 ATGATGTATAATGAA GAACACAAACGAGGA ACTTTA TCCTCGCTTGTGTTC TCTGTCAACTAAAAG TERM 2182 1425625 - 1425654 + T 82 -10.8 -3.59698 | opp_overlap 1425625 1425622 1425631, overlap 1425622 1425630 ATGTATAATGAAGAA CACAAACGAGGA ACTTTA TCCTCGCTTGTG TTCTCTGTCAACTAA TERM 2183 1425654 - 1425625 - T 100 -13 -3.86312 | opp_overlap 1425622 1425625 1425630, overlap 1425622 1425631 ATGTATAATGAAGAA CACAAACGAGGA ACTTTA TCCTCGCTTGTG TTCTCTGTCAACTAA TERM 2184 1425648 - 1425631 - T 76 -7 -4.36774 | opp_overlap 1425630 1425625 1425622, overlap 1425625 1425622 AATGAAGAACACAAA CGAGGA ACTTTA TCCTCG CTTGTGTTCTCTGTC Aflv_1415 1426554 - 1425640 - | Transcriptional regulator, LysR family TERM 2185 1426274 - 1426291 + g 73 -2.7 -5.18643 | AAACTTCCAGCTAAT TCTGTCT GTTC AGAGAGA TTTTGTTTTGCTTCG Aflv_1416 1426658 - 1427590 + | Permease of the drug/metabolite transporter (DMT) superfamily Aflv_1417 1427629 - 1428522 + | Permease of the drug/metabolite transporter (DMT) superfamily TERM 2186 1428502 - 1428532 + F 93 -10.5 -5.0538 | opp_overlap 1428502 1428504, overlap 1428504 AAACCAAAGAAAAAA TCGACCTCCATCA GTGCG TGATGGGGGTCAA TTTTTTAAAATGGCA TERM 2187 1428532 - 1428502 - f 100 -10.5 -5.74086 | opp_overlap 1428502 1428504, overlap 1428504 AAACCAAAGAAAAAA TCGACCTCCATCA GTGCG TGATGGGGGTCAA TTTTTTAAAATGGCA TERM 2188 1428504 - 1428530 + F 90 -13.1 -2.77166 | opp_overlap 1428504 1428502, overlap 1428502 ACCAAAGAAAAAATC GACCTCCATCA GTGCG TGATGGGGGTC AATTTTTTAAAATGG TERM 2189 1428530 - 1428504 - f 78 -10.9 -2.98035 | opp_overlap 1428502 1428504, overlap 1428502 ACCAAAGAAAAAATC GACCTCCATCA GTGCG TGATGGGGGTC AATTTTTTAAAATGG TERM 2190 1428953 - 1428965 + G 87 -6.3 -5.1848 | AGAGTGGGAGCGCCA GTTTG CGA CAAAC TTTTTTGGGTTAGTT Aflv_1418 1428519 - 1429469 + | Dehydrogenase Aflv_1419 1429539 - 1430345 + | ABC-type molybdenum transport system, ATPase component Aflv_1420 1430370 - 1430561 + | hypothetical protein Aflv_1421 1430572 - 1431447 + | Acetyltransferase TERM 2191 1431479 - 1431451 - T 100 -11.9 -5.01497 | opp_overlap 1431451 AGGATGAGATAAAAA TAAGCTGTTGG GCTTGTA CCAACAGCTTA TTTTCGTCTAGCTAC TERM 2192 1431451 - 1431479 + T 95 -11.9 -4.3586 | opp_overlap 1431451 AGGATGAGATAAAAA TAAGCTGTTGG GCTTGTA CCAACAGCTTA TTTTCGTCTAGCTAC Aflv_1422 1431871 - 1431494 - | hypothetical protein Aflv_1423 1432040 - 1432447 + | Transcriptional regulator, MerR family TERM 2193 1433679 - 1433669 - g 93 -4 -5.84432 | GACAACAGAAAAAAA TTCA GCT TGAA ACAATCCCAGCGGTT merA 1432444 - 1434060 + | Mercuric reductase TERM 2194 1434057 - 1434087 + T 80 -4.7 -5.20331 | gap 1, overlap 1434058 1434059 ATCTTGTTGTGCGGG AT-GAGCCACTTCC ATGT GGAAGCGGCTCTAG TTTTCTTTCTTATTT TERM 2195 1434058 - 1434086 + T 70 -8.2 -3.68538 | gap 1, overlap 1434057 1434059 TCTTGTTGTGCGGGA T-GAGCCACTTCC ATGT GGAAGCGGCTCTA GTTTTCTTTCTTATT TERM 2196 1434059 - 1434084 + T 93 -13.3 -3.38374 | overlap 1434058 1434057 CTTGTTGTGCGGGAT GAGCCACTTCC ATGT GGAAGCGGCTC TAGTTTTCTTTCTTA TERM 2197 1434478 - 1434508 + T 75 -10.4 -3.06696 | opp_overlap 1434489 TCGCTTTGTTTTATT TCCGCCACTAACCG CTC CGTTTGCTGGCGGA TGTGTTGGAGGAACG TERM 2198 1434642 - 1434657 + T 70 -2.5 -5.08824 | TTTCCCTTTTGGTGT CGGAT AAAACC GTCCG TTTTTTCGCTCGACC TERM 2199 1434779 - 1434797 + T 78 -3 -5.40625 | overlap 1434782 CAGAATAGCGAAGAG GGGGCTCT GTT AGCGCTTC TTTTTTCTCTAATAT TERM 2200 1434844 - 1434860 + T 73 -7.3 -3.9978 | opp_overlap 1434844 1434841, overlap 1434844 CCTTTCGTAAACGTA GGGAAAG TTC CTTTCTC TTCTTGCTTTTCTAG Aflv_1426 1435734 - 1435222 - | Transposase TERM 2201 1435453 - 1435421 - G 75 -5.6 -4.61284 | gap 1, overlap 1435416 1435425 AAGATGAAATGAAAA GCATCGCCTTCCTCG CCAT CAAGAAAGGCT-TGC ACCATCTTGGCATGA Aflv_1427 1436282 - 1435752 - | Transposase TERM 2202 1437711 - 1437736 + r 95 -4.7 -5.85244 | gap 1, opp_overlap 1437711 1437714 CAAAGTTCGATAACA GGAGGGCAGTGT AAA AC-CTGACCTTC TTTTTTATTTTCATT TERM 2203 1437893 - 1437840 - R 100 -9.8 -5.62045 | gap 1, opp_overlap 1437846, overlap 1437843 AGACAGAAGAAAAAA TTATAAGCCCGCAGCT-GCTCATAA ATACG TTAGTAACTAGCTGCGGGCTTATGA TGAAACAAACACTGT TERM 2204 1437890 - 1437843 - R 88 -11.5 -3.53281 | gap 1, opp_overlap 1437846, overlap 1437840 CAGAAGAAAAAATTA TAAGCCCGCAGCT-GCTCATAA ATACG TTAGTAACTAGCTGCGGGCTTA TGATGAAACAAACAC TERM 2205 1437846 - 1437887 + r 70 -8.7 -3.40403 | opp_overlap 1437843 1437840 AAGAAAAAATTATAA GCCCGCAGCTGCTCATAAA TACG TTAGTAACTAGCTGCGGGC TTATGATGAAACAAA Aflv_1429 1438133 - 1437933 - | hypothetical protein TERM 2206 1438303 - 1438249 - R 100 -14.7 -3.24161 | gap 1, opp_overlap 1438251 1438263, overlap 1438263 TAAACTTTTACAATA CAT-TGTGTAAAAAACAGACCTAAGG ATTA CCTCAGGTCTGTTTTTTACACTCATT TTCCAGCAGCTTTTG TERM 2207 1438251 - 1438301 + r 100 -15.1 -4.0896 | gap 1, opp_overlap 1438249 1438263, overlap 1438263 AACTTTTACAATACA T-TGTGTAAAAAACAGACCTAAGG ATTA CCTCAGGTCTGTTTTTTACACTCA TTTTCCAGCAGCTTT TERM 2208 1438263 - 1438288 + r 100 -11.9 -5.07053 | opp_overlap 1438249 1438263, overlap 1438251 ACATTGTGTAAAAAA CAGACCTAAGG ATTA CCTCAGGTCTG TTTTTTACACTCATT TERM 2209 1438288 - 1438263 - R 100 -14.1 -5.02476 | opp_overlap 1438263 1438251, overlap 1438249 ACATTGTGTAAAAAA CAGACCTAAGG ATTA CCTCAGGTCTG TTTTTTACACTCATT alsT 1439732 - 1438299 - | Na+/alanine symporter TERM 2210 1439560 - 1439573 + g 82 -3.1 -5.45802 | ATTTCTTGTTTTCCT TTTCC TTCA GGAGA TTTTTCTTTTAAGAC TERM 2211 1439960 - 1439972 + r 87 -3.5 -5.7946 | opp_overlap 1439957 1439958, overlap 1439959 ATCCTAGTACAATCT TTTTT TAA AAAAA TTTTTTTGTTAACAA TERM 2212 1439975 - 1439990 + r 83 -4.8 -5.2189 | opp_overlap 1439975 TTTTTTAAAAAAATT TTTTTG TTAA CAAAAA TTTTTTGGTGATTAA TERM 2213 1440033 - 1440016 - R 100 -7 -5.82172 | opp_overlap 1440016 1440032 ATTAACATAAAAAAA CACCCA CCATTC TGGGTG TTTTACAATTTGTGC TERM 2214 1440016 - 1440033 + r 73 -7 -4.26189 | opp_overlap 1440016, overlap 1440032 ATTAACATAAAAAAA CACCCA CCATTC TGGGTG TTTTACAATTTGTGC Aflv_1431 1441961 - 1440036 - | Nitric oxide reductase activation protein Aflv_1432 1442922 - 1441951 - | MoxR-like ATPase TERM 2215 1442624 - 1442610 - G 76 -2.8 -5.40072 | opp_overlap 1442610 GTTGTCCGAAAAAAA CTGACA GTG TTTCAG CTAATTTTGTTTTTC TERM 2216 1442897 - 1442886 - G 79 -3 -5.26316 | overlap 1442894 GTATTGTACAAAAAA CAAA TGAA TTTG TACAAACAAAAGAAA TERM 2217 1442939 - 1442914 - G 86 -5.7 -5.3689 | gap 1, opp_overlap 1442922, overlap 1442915 1442916 ACAAACAAAAGAAAA GTTTAACATAAT AAT ATTATGTT-AAC AAATGAATGAAAAAG TERM 2218 1442938 - 1442916 - G 70 -9.4 -2.84644 | opp_overlap 1442922, overlap 1442914 1442915 AAACAAAAGAAAAGT TTAACATAAT AAT ATTATGTTAA CAAATGAATGAAAAA Aflv_1433 1443241 - 1442969 - | hypothetical protein Aflv_1434 1443695 - 1443294 - | Transcriptional regulator PadR-like family TERM 2219 1443830 - 1443810 - R 100 -7.6 -6.34424 | opp_overlap 1443810 TTTGTAAAAAAAAAA GAAGAAGG TTCTC CCTCCTTC ATTTAAAAACAATTG Aflv_1435 1444806 - 1443829 - | Formyltetrahydrofolate hydrolase TERM 2220 1444823 - 1444786 - G 100 -11 -4.4204 | gap 1, opp_overlap 1444786 1444794, overlap 1444794 AACAATTATAACAAA TAAATAAATAGTCGAGA ACATA TCTCGACTATTT-TTTA CTTATTTAATATTTT TERM 2221 1444786 - 1444823 + g 79 -11 -3.07099 | gap 1, opp_overlap 1444786 1444794, overlap 1444794 AACAATTATAACAAA TAAATAAATAGTCGAGA ACATA TCTCGACTATTT-TTTA CTTATTTAATATTTT TERM 2222 1444816 - 1444794 - G 100 -10.7 -4.86861 | opp_overlap 1444794 1444786, overlap 1444786 TAACAAATAAATAAA TAGTCGAGA ACATA TCTCGACTA TTTTTTACTTATTTA TERM 2223 1444794 - 1444816 + g 100 -10.7 -5.4148 | opp_overlap 1444786 1444794, overlap 1444786 TAACAAATAAATAAA TAGTCGAGA ACATA TCTCGACTA TTTTTTACTTATTTA Aflv_1436 1445639 - 1444821 - | Formate/nitrite family of transporters speE 1445776 - 1446738 + | Spermidine synthase TERM 2224 1446760 - 1446715 - f 83 -9.1 -4.02571 | gap 1, opp_overlap 1446724 1446758, overlap 1446717 1446724 CAATTCATGAAAGAA CAGT-TACAACCGCAGTCGAAA TGA TTTCGGCTGCGGTTGTTGACAA AGAGATATTTTTGTA TERM 2225 1446758 - 1446717 - f 95 -13.9 -3.59653 | gap 1, opp_overlap 1446724, overlap 1446715 1446724 ATTCATGAAAGAACA GT-TACAACCGCAGTCGAAA TGA TTTCGGCTGCGGTTGTTGAC AAAGAGATATTTTTG TERM 2226 1446724 - 1446750 + F 100 -17.4 -3.61398 | opp_overlap 1446724 1446717 1446715 AAAGAACAGTTACAA CCGCAGTCGAAA TGA TTTCGGCTGCGG TTGTTGACAAAGAGA TERM 2227 1446750 - 1446724 - f 100 -15.2 -3.45634 | opp_overlap 1446724, overlap 1446717 1446715 AAAGAACAGTTACAA CCGCAGTCGAAA TGA TTTCGGCTGCGG TTGTTGACAAAGAGA rpmGA 1446829 - 1446978 + | Ribosomal protein L33 TERM 2228 1447006 - 1446971 - T 100 -15.6 -3.59738 | opp_overlap 1446976, overlap 1446976 CATTACATCGTGAAA CAAAATAACCCGCGGC ATAT GCCACGGGTTATTTTT AATGCCAATGAATGC TERM 2229 1447001 - 1446976 - T 100 -15.5 -4.87803 | opp_overlap 1446976, overlap 1446971 CATCGTGAAACAAAA TAACCCGCGGC ATAT GCCACGGGTTA TTTTTAATGCCAATG TERM 2230 1446976 - 1447001 + T 100 -13.3 -4.72986 | opp_overlap 1446971 1446976 CATCGTGAAACAAAA TAACCCGCGGC ATAT GCCACGGGTTA TTTTTAATGCCAATG treR 1447727 - 1447005 - | Transcriptional regulator, GntR family treA 1449419 - 1447755 - | Trehalose-6-phosphate hydrolase TERM 2231 1449150 - 1449161 + g 72 -7.2 -4.01158 | TACCATTTTTATGTT GCGC TTAT GCGC TTCTTTAATAAGATT TERM 2232 1449295 - 1449266 - G 76 -9.4 -3.57144 | gap 2, opp_overlap 1449265 1449264 GCGGTGACTCGTAAA TCGGGGT-GA-GCC AAAT GGCATCCACCCCGA GCATTTTTAAATAAT treP 1450824 - 1449421 - | Phosphotransferase system (PTS) trehalose-specific enzyme II, BC component TERM 2233 1451014 - 1450958 - R 93 -7.6 -5.52384 | opp_overlap 1450958 1450974 TTTTCACGAAAAAAA GATGTCC-CATATTGAAGTGTCCTCTGT CAG AGAGGAGACACTTC-ATACACGGACATC TTCTTCTACTTACTT Aflv_1442 1451409 - 1451020 - | hypothetical protein parC 1453871 - 1451475 - | DNA topoisomerase IV subunit A TERM 2234 1451699 - 1451734 + g 86 -2.5 -5.86061 | overlap 1451701 GAAGTTGTCCTCGTT TCGCACGAGTAGATA GTTCGA TCTCTGCTCGCGCAA TTTTTTTTGCTGCCC TERM 2235 1453443 - 1453459 + g 75 -5.1 -4.89966 | opp_overlap 1453440 CGTATCATCGAAGTT CGGTACA AAC TCTACCG TTTCTTTTTCAATAT parE 1455849 - 1453876 - | DNA topoisomerase IV subunit B TERM 2236 1455126 - 1455138 + g 71 -4.1 -4.84363 | TAAAAAATACAACGG GATGT AGC ACGTC TTTTTCCTCGTTTAA TERM 2237 1455971 - 1455942 - R 79 -5.1 -5.06414 | opp_overlap 1455945, overlap 1455945 CGTCGTGAAGAAAAA GAACGACCATT ACAAAAAG AATGGTCGTTT TTACCGTGTGAGCGC TERM 2238 1455968 - 1455945 - R 79 -6.8 -4.63592 | opp_overlap 1455945, overlap 1455942 CGTGAAGAAAAAGAA CGACCATT ACAAAAAG AATGGTCG TTTTTACCGTGTGAG TERM 2239 1455945 - 1455968 + r 79 -6.8 -4.64766 | opp_overlap 1455945 1455942 CGTGAAGAAAAAGAA CGACCATT ACAAAAAG AATGGTCG TTTTTACCGTGTGAG Aflv_1445 1456376 - 1455972 - | Predicted CoA-binding protein Aflv_1446 1456503 - 1457093 + | Predicted membrane protein TERM 2240 1457137 - 1457163 + G 100 -10.2 -5.41143 | opp_overlap 1457133 1457137 1457138, overlap 1457138 TGTAACGAAAATGAA TGCTTTGCTTCA AGA TGAAGCGGAGCG TTTTTTTGCGACATA TERM 2241 1457138 - 1457162 + G 95 -11.5 -3.83963 | opp_overlap 1457133 1457137 1457138, overlap 1457137 GTAACGAAAATGAAT GCTTTGCTTCA AGA TGAAGCGGAGC GTTTTTTTGCGACAT Aflv_1447 1457084 - 1458457 + | Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized domain TERM 2242 1458578 - 1458537 - T 100 -14 -4.49756 | gap 2, opp_overlap 1458537 TTTCAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTATTTTGTTATGG TERM 2243 1458537 - 1458578 + T 100 -11.8 -4.92812 | gap 2, opp_overlap 1458537 TTTCAAACATGAAAA GGGGC-GTCTAAT-AGCCGA AAAA TCGACTTATTAGACAGCCCC TTTATTTTGTTATGG Aflv_1448 1459140 - 1458580 - | hypothetical protein Aflv_1449 1459887 - 1459144 - | Predicted secreted lysophospholipase protein, SGNH-hydrolase superfamily TERM 2244 1459402 - 1459387 - G 77 -6.2 -4.6635 | AAATGCTGAAGAAAA TGGATT GTAT AATCCA ATAAGCACAATATAA TERM 2245 1459944 - 1459915 - R 100 -9.5 -5.18371 | opp_overlap 1459915 1459913 1459921 1459923, overlap 1459923 CTCTATAAAAGAAAA GACAAAAATGACA CGGT CATCATTTTTGTC TGTATATGTTATTCT TERM 2246 1459933 - 1459923 - R 85 -5.4 -5.34632 | opp_overlap 1459921 1459915 1459913 1459923, overlap 1459915 AAGAAAAGACAAAAA TGAC ACG GTCA TCATTTTTGTCTGTA Aflv_1450 1460525 - 1459953 - | Cu2+-binding oxygen sensor (SCO1/SenC/PrrC family) Aflv_1451 1461380 - 1460538 - | hypothetical protein TERM 2247 1461460 - 1461470 + r 75 -2.6 -5.24129 | CCCTGTATGTCGTCG TTTT CAT AAAA TTTTTTGTAAAAAAA TERM 2248 1461515 - 1461486 - R 100 -10.8 -5.40072 | opp_overlap 1461485 1461486 1461488 TTTTTTGTAAAAAAA GAGCTGATTTGC ACATTA GCAAAACAGCTC CTTCGTCATTTATGC TERM 2249 1461486 - 1461515 + r 76 -10.8 -2.60798 | opp_overlap 1461486, overlap 1461485 1461488 TTTTTTGTAAAAAAA GAGCTGATTTGC ACATTA GCAAAACAGCTC CTTCGTCATTTATGC Aflv_1452 1461776 - 1461525 - | hypothetical protein ilvA 1463142 - 1461874 - | Threonine dehydratase TERM 2250 1463275 - 1463258 - R 79 -6.9 -4.56791 | opp_overlap 1463258, overlap 1463252 ATTTAAAAAGATAAA GCCCGCC GATT AGCGAGC TCGTTCATATATGCA dfrA 1463755 - 1463267 - | Dihydrofolate reductase thyB 1464563 - 1463769 - | Thymidylate synthase TERM 2251 1464704 - 1464665 - R 79 -5.7 -4.89477 | opp_overlap 1464667, overlap 1464666 1464667 TCTTCAATAATAAAA CCGCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGCTT CATTTGTTTTTCTTT TERM 2252 1464703 - 1464666 - R 74 -9.2 -3.52963 | opp_overlap 1464667, overlap 1464665 1464667 CTTCAATAATAAAAC CGCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGCT TCATTTGTTTTTCTT TERM 2253 1464702 - 1464667 - R 83 -12.7 -2.71055 | opp_overlap 1464667, overlap 1464666 1464665 TTCAATAATAAAACC GCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGC TTCATTTGTTTTTCT TERM 2254 1464667 - 1464702 + r 84 -10.5 -3.8823 | opp_overlap 1464667 1464666 1464665 TTCAATAATAAAACC GCAACAAGCCCCTTC TATTCC GAAGACGCTTGTTGC TTCATTTGTTTTTCT tatC 1465433 - 1464681 - | Twin-arginine protein translocation pathway component TatAD TERM 2255 1465372 - 1465361 - G 81 -4.4 -5.3798 | opp_overlap 1465361 CAACAACAATAAAAA TACG TTTG CGTA ATTCTTCTAAGTGTT TERM 2256 1465483 - 1465465 - R 91 -11 -4.62069 | opp_overlap 1465464 1465463 TTGCCATGTTAAAAA CGGCAACA TAC CGTTGCCG CCTTATCGTTGAATT tatA 1465688 - 1465506 - | Twin-arginine protein translocation pathway component TatAD Aflv_1458 1465780 - 1466142 + | URI-family nuclease TERM 2257 1466169 - 1466143 - T 100 -13.9 -4.11585 | opp_overlap 1466147, overlap 1466147 ATCTATTATAAATAA TAAACGAGGGA TGGAT TCCCTCGTTTA GCTTGCCTTTTCATA TERM 2258 1466165 - 1466147 - T 91 -10.3 -4.63952 | opp_overlap 1466147, overlap 1466143 ATTATAAATAATAAA CGAGGGA TGGAT TCCCTCG TTTAGCTTGCCTTTT TERM 2259 1466147 - 1466165 + T 84 -10.3 -3.80083 | opp_overlap 1466143 1466147 ATTATAAATAATAAA CGAGGGA TGGAT TCCCTCG TTTAGCTTGCCTTTT gltT 1467393 - 1466167 - | Proton/sodium-glutamate symport protein TERM 2260 1467562 - 1467581 + r 89 -12.2 -3.71148 | opp_overlap 1467562 TTTTACACAAAAAAA CTACCACG CAAT CGTGGTAG TTTACATCCGTTTTG TERM 2261 1467581 - 1467562 - R 100 -12.2 -5.71712 | opp_overlap 1467562 TTTTACACAAAAAAA CTACCACG CAAT CGTGGTAG TTTACATCCGTTTTG Aflv_1460 1467723 - 1467583 - | hypothetical protein Aflv_1462 1468525 - 1467749 - | SAM-dependent methyltransferase Aflv_1461 1467742 - 1467879 + | hypothetical protein TERM 2262 1468565 - 1468547 - TR 93 -6.7 -5.46706 | ACCTCAAAAGAAAAA GGATGTC AATTG GACACCC TCAGCAATGTTTTTC Aflv_1463 1469051 - 1468566 - | hypothetical protein metA 1469136 - 1470053 + | Homoserine O-succinyltransferase TERM 2263 1470055 - 1470074 + F 90 -9.3 -5.14163 | opp_overlap 1470054 ATGTATGGGAGTAAT TCCTCGC CGCACA GCGAGGA TTTTTATTGCTACAT TERM 2264 1470364 - 1470374 + G 78 -4 -5.10208 | CCGATATGTATGGTC GAAA ACG TTTC TTTTTATTCGGGTTA TERM 2265 1471249 - 1471259 + G 75 -3.2 -5.09762 | TCGCTGGATTTGGAG TGGG ATT CTCA TTTTCTTTGTTACCG TERM 2266 1471318 - 1471334 + G 77 -3.7 -5.10497 | overlap 1471306 GTTTTCGTGGAACAG CTAATTC AAC GAATTCG TTTTTTCGCTCACTT mdr 1470081 - 1471652 + | Multidrug-efflux transporter padR 1471654 - 1472208 + | Transcriptional regulator PadR-like family TERM 2267 1472193 - 1472224 + TF 73 -10.2 -2.87325 | opp_overlap 1472194 1472196, overlap 1472192 1472196 AAAACTAAAAGAAAA AGGGGGAAGCTTAT AACA ATGAGCTTCCCTCA CTTCTTCTGCAACAT TERM 2268 1472223 - 1472194 - Tf 100 -9.3 -5.56372 | opp_overlap 1472193 1472192 1472196, overlap 1472196 AAACTAAAAGAAAAA GGGGGAAGCTTAT AACA ATGAGCTTCCCTC ACTTCTTCTGCAACA TERM 2269 1472221 - 1472196 - Tf 73 -10.5 -2.91657 | opp_overlap 1472196 1472193 1472192, overlap 1472194 ACTAAAAGAAAAAGG GGGAAGCTTAT AACA ATGAGCTTCCC TCACTTCTTCTGCAA TERM 2270 1472196 - 1472221 + TF 83 -12.7 -2.68806 | opp_overlap 1472194 1472196, overlap 1472193 1472192 ACTAAAAGAAAAAGG GGGAAGCTTAT AACA ATGAGCTTCCC TCACTTCTTCTGCAA Aflv_1467 1472962 - 1472222 - | SAM-dependent methyltransferase TERM 2271 1472936 - 1472920 - Gf 77 -4.5 -5.00616 | opp_overlap 1472920 CCCTTTTTGAAAAAA TAAACAT GTT ACGTTTA TTGTAGCAGAAAGGA Aflv_1468 1472961 - 1473092 + | hypothetical protein TERM 2272 1473154 - 1473184 + Tr 91 -9.7 -4.58773 | opp_overlap 1473154 1473160, overlap 1473160 CTCGCCAAAAATGAT GAAAAAGTCGGGC TGATC GCCCGACTCATTC TTTTCGTTTGCTCAC TERM 2273 1473184 - 1473154 - TR 81 -11.9 -2.53903 | opp_overlap 1473154 1473160, overlap 1473160 CTCGCCAAAAATGAT GAAAAAGTCGGGC TGATC GCCCGACTCATTC TTTTCGTTTGCTCAC TERM 2274 1473160 - 1473178 + Tr 83 -11.7 -3.15276 | opp_overlap 1473154 1473160, overlap 1473154 AAAAATGATGAAAAA GTCGGGC TGATC GCCCGAC TCATTCTTTTCGTTT TERM 2275 1473178 - 1473160 - TR 100 -11.7 -4.88129 | opp_overlap 1473160 1473154, overlap 1473154 AAAAATGATGAAAAA GTCGGGC TGATC GCCCGAC TCATTCTTTTCGTTT Aflv_1469 1473854 - 1473372 - | Demethylmenaquinone methyltransferase Aflv_1470 1474414 - 1473914 - | Predicted membrane-bound metal-dependent hydrolase Aflv_1471 1474587 - 1475687 + | Uncharacterized membrane protein TERM 2276 1475673 - 1475700 + F 95 -6.3 -5.62288 | opp_overlap 1475673 TCAAAACTTAAAAAA GGTATCCCTAG CTAATC TTTGGGATACC TTTTTGTTTTATTCG TERM 2277 1475700 - 1475673 - f 85 -5.6 -5.2696 | opp_overlap 1475673 TCAAAACTTAAAAAA GGTATCCCTA GCTAATCT TTGGGATACC TTTTTGTTTTATTCG tlpA 1475750 - 1477456 + | Methyl-accepting chemotaxis protein TERM 2278 1477453 - 1477481 + T 100 -16.1 -4.84761 | TGAATTATTTCGTAC GTAGCCGCGCATA TTG TATGCACGGCTAC TTTTTCTCAAAATAT Aflv_1473 1478368 - 1477478 - | Uroporphyrinogen-III synthase TERM 2279 1478814 - 1478827 + G 71 -2.4 -5.20328 | ATCATTTCAACCATT CAAG CTGTGA CTTG TTTCTTTTTTTACCG kinB 1478478 - 1479788 + | Signal transduction histidine kinase TERM 2280 1479771 - 1479795 + T 87 -6.5 -5.20735 | opp_overlap 1479753 AAGCGCTCTCGATTT GAACAAGTGAG TTA TTGACTTGTTC TTTCTTTTTTATTGA TERM 2281 1479857 - 1479839 - T 86 -7.4 -5.09225 | opp_overlap 1479839 AGTTTATTTAAAAAA GGTCGTGT GTA AAACGACC TTTTACAAATGTTTT TERM 2282 1479839 - 1479857 + T 76 -7.4 -4.16146 | opp_overlap 1479839 AGTTTATTTAAAAAA GGTCGTGT GTA AAACGACC TTTTACAAATGTTTT Aflv_1475 1480300 - 1479860 - | Flavodoxin TERM 2283 1480395 - 1480421 + r 71 -6.5 -4.28971 | opp_overlap 1480382 1480398, overlap 1480397 1480398 TATTTTTTTAAGAAA AAACGCGCGAT TTTTT ATCGCGCGCTC TTTATCTATTATTCT TERM 2284 1480397 - 1480419 + r 76 -9.1 -3.72553 | opp_overlap 1480398, overlap 1480395 1480398 TTTTTTTAAGAAAAA ACGCGCGAT TTTTT ATCGCGCGC TCTTTATCTATTATT TERM 2285 1480418 - 1480398 - R 100 -12.6 -5.4505 | opp_overlap 1480398 1480397 1480395 TTTTTTAAGAAAAAA CGCGCGAT TTTTT ATCGCGCG CTCTTTATCTATTAT TERM 2286 1480398 - 1480418 + r 83 -12.6 -2.81905 | opp_overlap 1480398, overlap 1480397 1480395 TTTTTTAAGAAAAAA CGCGCGAT TTTTT ATCGCGCG CTCTTTATCTATTAT fruA 1482292 - 1480430 - | Phosphotransferase system (PTS) fructose-specific enzyme II, ABC subunits TERM 2287 1480560 - 1480546 - G 71 -4.2 -4.91109 | overlap 1480547 TCGGGATTACAAAAA TTCCAC CAT GTGGAG CTGGGAGACCGATGC TERM 2288 1480792 - 1480776 - G 84 -10.9 -3.66356 | ATCGCTAATCCTAAA GGTGGAA CCA TTCCACC TGCCATAATAGCTGC fruK 1483209 - 1482283 - | Fructose-1-phosphate kinase fruR 1483961 - 1483206 - | Transcriptional regulator of sugar metabolism TERM 2289 1484120 - 1484102 - R 100 -9.6 -5.69262 | opp_overlap 1484097 1484102 TCAGAAAAATAAAAA CTGCCTCA CGA TGAGACAG TTTCGTTTTCATTTC TERM 2290 1484102 - 1484120 + r 76 -7.4 -4.29472 | opp_overlap 1484102, overlap 1484097 TCAGAAAAATAAAAA CTGCCTCA CGA TGAGACAG TTTCGTTTTCATTTC Aflv_1479 1485936 - 1484107 - | Multidomain signal transduction protein, diguanylate cyclase/phosphodiesterase (contains GGDEF and HD-GYP domains) TERM 2291 1485142 - 1485152 + g 82 -2.4 -5.58454 | opp_overlap 1485142 AAAAGCAATCGAAAA CTGG CCA CCCG TTTTTTTCGTCTCCC TERM 2292 1485797 - 1485752 - G 72 -7.9 -3.79162 | gap 1 TCCATAGAAAATGAA CTTTTATTTTGAA-CGATTTGA ATT TCAAAACGACTCAAAATAAACG CGGAGATAGATAAAA TERM 2293 1486000 - 1486018 + r 80 -4.5 -5.24531 | opp_overlap 1486002, overlap 1486002 AAACATATACATTAA AAGGGAG TTATC CTCCCTC TTTTTTCTACCCAAT TERM 2294 1486002 - 1486016 + r 76 -7.1 -4.25873 | opp_overlap 1486002, overlap 1486000 ACATATACATTAAAA GGGAG TTATC CTCCC TCTTTTTTCTACCCA TERM 2295 1486016 - 1486002 - R 78 -7.1 -4.41956 | opp_overlap 1486002 1486000 ACATATACATTAAAA GGGAG TTATC CTCCC TCTTTTTTCTACCCA Aflv_1480 1486740 - 1486123 - | Uncharacterized membrane protein TERM 2296 1486370 - 1486396 + g 74 -10.2 -2.5806 | opp_overlap 1486394, overlap 1486369 TCTTTTCCTAAAACG GCTTGTGTCGCT TCA AGTGATACAGGC ATTCTACCACCGTTT TERM 2297 1486806 - 1486817 + r 75 -3 -5.3321 | opp_overlap 1486806 AAACGGTTATATTAA CAAA ATAT TTTG TTTTTCTTATTGATT glpK 1488515 - 1486992 - | Glycerol kinase glpP 1489164 - 1488610 - | Glycerol-3-phosphate responsive antiterminator (mRNA-binding) Aflv_1483 1489565 - 1489161 - | hypothetical protein TERM 2298 1489691 - 1489654 - R 77 -9.4 -3.44527 | opp_overlap 1489660 1489664, overlap 1489656 1489660 1489664 TATTGACGACTATAA CATAAATAAAGCCCAG ATTTTA CTGGACTTTATTCATA CACGTGATGAGAAGG TERM 2299 1489689 - 1489656 - R 75 -9.8 -3.29273 | opp_overlap 1489660 1489664, overlap 1489654 1489660 1489664 TTGACGACTATAACA TAAATAAAGCCCAG ATTTTA CTGGACTTTATTCA TACACGTGATGAGAA TERM 2300 1489685 - 1489660 - R 82 -8.4 -4.29304 | opp_overlap 1489660 1489664, overlap 1489656 1489654 1489664 CGACTATAACATAAA TAAAGCCCAG ATTTTA CTGGACTTTA TTCATACACGTGATG TERM 2301 1489681 - 1489664 - R 74 -4.8 -4.70921 | opp_overlap 1489664 1489660, overlap 1489660 1489656 1489654 TATAACATAAATAAA GCCCAG ATTTTA CTGGAC TTTATTCATACACGT Aflv_1484 1489940 - 1489683 - | hypothetical protein TERM 2302 1490017 - 1490005 - H 79 -3.5 -5.40072 | CCTCCTCTAAAAAAA TTTTT TGA AAAAA TCGCCTTTTTGTCTT cspD 1490181 - 1490381 + | Cold shock protein, CspA family TERM 2303 1490417 - 1490435 + F 100 -11 -5.4833 | opp_overlap 1490417 ATAGCTCGACGAAAA GGCCAGCA ATA TGCTGGTC TTTTTTATTACATAC TERM 2304 1490435 - 1490417 - f 82 -8.8 -4.26344 | opp_overlap 1490417 ATAGCTCGACGAAAA GGCCAGCA ATA TGCTGGTC TTTTTTATTACATAC Aflv_1486 1490491 - 1490772 + | hypothetical protein TERM 2305 1490771 - 1490809 + T 89 -4.5 -5.63517 | opp_overlap 1490773 1490776, overlap 1490772 1490779 CGATCCACCACATGT AATGATGAGGTGTCCCG TATCT CGGGGCACCTTGTTACG TTTTTTGTTTCACAA TERM 2306 1490772 - 1490808 + T 75 -8 -3.97026 | opp_overlap 1490773 1490776, overlap 1490771 1490779 GATCCACCACATGTA ATGATGAGGTGTCCCG TATCT CGGGGCACCTTGTTAC GTTTTTTGTTTCACA TERM 2307 1490779 - 1490801 + T 93 -12.7 -3.87569 | opp_overlap 1490776 1490773, overlap 1490772 1490771 CACATGTAATGATGA GGTGTCCCG TATCT CGGGGCACC TTGTTACGTTTTTTG Aflv_1487 1491641 - 1490982 - | Ribonuclease HI family protein TERM 2308 1491562 - 1491552 - G 78 -5.4 -5.00884 | opp_overlap 1491552 ATCTTCTGCAAAAAA CAGA GCC TCTG TCACTTCCATCTCTG Aflv_1488 1491715 - 1492434 + | Uncharacterized member of the PurR regulon TERM 2309 1492472 - 1492443 - f 90 -10.9 -4.24726 | opp_overlap 1492443 AGAATAATGGTAAAA TGTTGTATGAGAC TTCG GTCTTATACAACA TTTTTTTGTAAAGGA TERM 2310 1492443 - 1492472 + F 100 -13.1 -5.60993 | opp_overlap 1492443 AGAATAATGGTAAAA TGTTGTATGAGAC TTCG GTCTTATACAACA TTTTTTTGTAAAGGA Aflv_1489 1492495 - 1493391 + | Permease of the drug/metabolite transporter (DMT) superfamily TERM 2311 1493401 - 1493373 - Tf 100 -7.5 -5.64421 | gap 1, overlap 1493376 ATGGCAAAGAAAAAA GAA-CGCTCGCC TCTCAT AGCGAGCGCTTC CACCTACTTATTACA TERM 2312 1493397 - 1493376 - Tf 93 -9.4 -4.88687 | overlap 1493373 GCAAAGAAAAAAGAA CGCTCGCC TCTCAT AGCGAGCG CTTCCACCTACTTAT Aflv_1490 1493922 - 1493386 - | hypothetical protein TERM 2313 1493969 - 1493959 - gR 71 -6.8 -4.0896 | AAATCGTGGGCAAAA CGCT CCA AGCG TCAATCCACAAGGAT sspL 1493915 - 1494055 + | Small acid-soluble spore protein TERM 2314 1494079 - 1494057 - TR 100 -12.8 -4.91778 | opp_overlap 1494050 1494057 1494060 CAAACACAAAATAAA GAAGAGAGCA GAT CGCTCTCTTC TTATCGTTTTAACTT TERM 2315 1494057 - 1494079 + Tr 89 -12.1 -3.70033 | opp_overlap 1494057, overlap 1494050 1494060 CAAACACAAAATAAA GAAGAGAGC AGATC GCTCTCTTC TTATCGTTTTAACTT TERM 2316 1494060 - 1494076 + Tr 75 -8 -3.96497 | opp_overlap 1494057, overlap 1494057 1494050 ACACAAAATAAAGAA GAGAGC AGATC GCTCTC TTCTTATCGTTTTAA citB 1496788 - 1494080 - | Aconitase A sspO 1496958 - 1497107 + | Small acid-soluble spore protein TERM 2317 1497131 - 1497101 - f 100 -14.2 -5.43974 | opp_overlap 1497108, overlap 1497105 AAAACGAAAGAAAAA TCAATAATCCCGCT TGA AGCGGGATTATTCA GACTGTTGAAAAACG TERM 2318 1497127 - 1497105 - f 100 -15 -3.98991 | opp_overlap 1497108, overlap 1497101 CGAAAGAAAAATCAA TAATCCCGCT TGA AGCGGGATTA TTCAGACTGTTGAAA TERM 2319 1497108 - 1497124 + F 90 -12.3 -3.65201 | opp_overlap 1497105 1497101 AAGAAAAATCAATAA TCCCGCT TGA AGCGGGA TTATTCAGACTGTTG TERM 2320 1497145 - 1497167 + F 100 -13.6 -5.62288 | opp_overlap 1497145 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTTAA TERM 2321 1497167 - 1497145 - f 100 -13.6 -4.59109 | opp_overlap 1497145 CAGACTGTTGAAAAA CGATTTTGTC AAG GACAAAATCG TTTTTCTTTTGTTAA TERM 2322 1498473 - 1498434 - g 88 -10.1 -4.13995 | gap 1, overlap 1498437 TTTGCAGAAAGTAAA GAACTCCACGGACTTCGT TTTGC ACGATA-CCGCGGAGTTC CATACGTACAGATTC Aflv_1494 1497222 - 1498583 + | Transposase TERM 2323 1498633 - 1498597 - T 100 -9.7 -5.47846 | opp_overlap 1498600 1498606, overlap 1498600 1498606 AAGGAAAAAAGAAAA GAAGAAAAAGTTCAC GAGGAAA GTGAACTTTTTCTTG ACTCCCCACTTTTTC TERM 2324 1498600 - 1498630 + T 81 -11.4 -3.06312 | opp_overlap 1498600 1498597 1498606, overlap 1498606 GAAAAAAGAAAAGAA GAAAAAGTTCAC GAGGAAA GTGAACTTTTTC TTGACTCCCCACTTT TERM 2325 1498630 - 1498600 - T 95 -11.4 -4.75934 | opp_overlap 1498600 1498606, overlap 1498597 1498606 GAAAAAAGAAAAGAA GAAAAAGTTCAC GAGGAAA GTGAACTTTTTC TTGACTCCCCACTTT TERM 2326 1498606 - 1498624 + T 76 -4.6 -5.10461 | opp_overlap 1498606 1498600 1498597, overlap 1498600 AGAAAAGAAGAAAAA GTTCAC GAGGAAA GTGAAC TTTTTCTTGACTCCC TERM 2327 1498624 - 1498606 - T 86 -4.6 -5.47964 | opp_overlap 1498600 1498606, overlap 1498600 1498597 AGAAAAGAAGAAAAA GTTCAC GAGGAAA GTGAAC TTTTTCTTGACTCCC TERM 2328 1498689 - 1498653 - T 93 -13.9 -3.02511 | opp_overlap 1498660 1498663, overlap 1498663 CCCACTTTTTCAACA CTTTGAATAATCCCGCT TGA AGCGGGATTATTCATAC ATGTTAACTTCGTCG TERM 2329 1498660 - 1498682 + T 100 -15 -3.2218 | opp_overlap 1498653 1498663, overlap 1498663 TTTCAACACTTTGAA TAATCCCGCT TGA AGCGGGATTA TTCATACATGTTAAC TERM 2330 1498663 - 1498679 + T 90 -12.3 -3.74762 | opp_overlap 1498653 1498663, overlap 1498660 CAACACTTTGAATAA TCCCGCT TGA AGCGGGA TTATTCATACATGTT TERM 2331 1498679 - 1498663 - T 90 -12.3 -3.65201 | opp_overlap 1498663 1498660, overlap 1498653 CAACACTTTGAATAA TCCCGCT TGA AGCGGGA TTATTCATACATGTT Aflv_1495 1498997 - 1498680 - | hypothetical protein sspP 1499035 - 1499187 + | Small acid-soluble spore protein TERM 2332 1499173 - 1499229 + F 81 -6.8 -4.8236 | gap 1, opp_overlap 1499183 1499190, overlap 1499184 1499190 CAAAAGCATAACTCA AGTCACGAT-ATGTAAAAGAGCTGACA CAAC TGTCAGCTCTTTTACTTGATTCTGCCA TTGTTTTTTTACATA TERM 2333 1499218 - 1499183 - f 100 -16.4 -2.83112 | opp_overlap 1499173 1499184 1499190, overlap 1499190 ACTCAAGTCACGATA TGTAAAAGAGCTGACA CAAC TGTCAGCTCTTTTACT TGATTCTGCCATTGT TERM 2334 1499184 - 1499217 + F 100 -19.9 -3.45832 | opp_overlap 1499183 1499190, overlap 1499173 1499190 CTCAAGTCACGATAT GTAAAAGAGCTGACA CAAC TGTCAGCTCTTTTAC TTGATTCTGCCATTG TERM 2335 1499211 - 1499190 - f 100 -13.1 -4.24948 | opp_overlap 1499184 1499173 1499190, overlap 1499183 TCACGATATGTAAAA GAGCTGACA CAAC TGTCAGCTC TTTTACTTGATTCTG TERM 2336 1499190 - 1499211 + F 100 -13.1 -4.51197 | opp_overlap 1499190 1499183, overlap 1499184 1499173 TCACGATATGTAAAA GAGCTGACA CAAC TGTCAGCTC TTTTACTTGATTCTG Aflv_1497 1499218 - 1499703 + | hypothetical protein TERM 2337 1499687 - 1499734 + T 70 -8.1 -3.66178 | gap 1, opp_overlap 1499682 1499699, overlap 1499699 AATACGAACATTTGC TAACAAAAAAAAGCTAATC-GC CTGTT GCTGATTAGCTTTTTTCTTTTA TTTCACGTTGGAGGC TERM 2338 1499699 - 1499722 + T 100 -6.1 -5.95449 | gap 1, opp_overlap 1499699, overlap 1499687 TGCTAACAAAAAAAA GCTAATC-GC CTGTT GCTGATTAGC TTTTTTCTTTTATTT TERM 2339 1499722 - 1499699 - T 100 -6.1 -6.09888 | gap 1, opp_overlap 1499687 1499699 TGCTAACAAAAAAAA GCTAATC-GC CTGTT GCTGATTAGC TTTTTTCTTTTATTT Aflv_1498 1500191 - 1499718 - | Membrane protein involved in cytochrome C biogenesis TERM 2340 1499914 - 1499897 - G 73 -2.7 -5.13741 | overlap 1499907 TTAAGCCAACAAAAA TAAAAGC GAAC GCTTTTG AACGTTGTAAATAAA yneI 1500581 - 1500207 - | CheY-like receiver domain protein ccdA 1501324 - 1500593 - | Cytochrome c biogenesis protein TERM 2341 1500963 - 1500951 - G 70 -5.5 -4.45168 | overlap 1500952 TGTTGAAAAGATAAA CGACG ATC CGTCA TTAAAAAGGTCGGCT TERM 2342 1501404 - 1501386 - R 85 -6.7 -5.0538 | opp_overlap 1501386 TTCCATGCTAAAAAA GACACTC GTTTT GAGTGCC TTACCTTTATTTCAA Aflv_1501 1501623 - 1501411 - | hypothetical protein TERM 2343 1501756 - 1501700 - R 76 -4.6 -5.14965 | opp_overlap 1501711 1501714 1501719, overlap 1501714 1501719 ATGTTCAGTAAAAAA TCTTCATTCGATAATAAAACGGGGAG ATATG CTCCCCGTTTTATTATTTACCTAACA ATGCTTTGACTCGCG TERM 2344 1501711 - 1501745 + r 100 -18.9 -3.65351 | opp_overlap 1501700 1501714 1501719, overlap 1501714 1501719 AAAATCTTCATTCGA TAATAAAACGGGGAG ATATG CTCCCCGTTTTATTA TTTACCTAACAATGC TERM 2345 1501714 - 1501742 + r 100 -16.2 -3.96216 | opp_overlap 1501714 1501700 1501719, overlap 1501711 1501719 ATCTTCATTCGATAA TAAAACGGGGAG ATATG CTCCCCGTTTTA TTATTTACCTAACAA TERM 2346 1501742 - 1501714 - R 100 -16.2 -3.32963 | opp_overlap 1501711 1501714 1501719, overlap 1501700 1501719 ATCTTCATTCGATAA TAAAACGGGGAG ATATG CTCCCCGTTTTA TTATTTACCTAACAA TERM 2347 1501719 - 1501737 + r 100 -11.7 -5.011 | opp_overlap 1501719 1501714 1501700, overlap 1501714 1501711 CATTCGATAATAAAA CGGGGAG ATATG CTCCCCG TTTTATTATTTACCT TERM 2348 1501737 - 1501719 - R 100 -11.7 -4.78237 | opp_overlap 1501714 1501711 1501719, overlap 1501714 1501700 CATTCGATAATAAAA CGGGGAG ATATG CTCCCCG TTTTATTATTTACCT tkt 1503779 - 1501743 - | Transketolase TERM 2349 1503878 - 1503853 - R 80 -4.7 -5.19261 | AAACTGACGAAAAAA GAGAACATCCA TAGT CGTATGTTCCC CATGATATACGCATT Aflv_1503 1504122 - 1503892 - | hypothetical protein Aflv_1504 1504823 - 1504143 - | Site-specific recombinase, DNA invertase Aflv_1505 1505144 - 1504839 - | LysM domain protein lexA 1505265 - 1505906 + | SOS-response transcriptional repressor (RecA-mediated autopeptidase) TERM 2350 1505946 - 1505926 - T 100 -11.2 -5.25805 | opp_overlap 1505926 1505945 AAGAAACGGAAAAAA GCTAACGG AAAAA CCGTTAGC TTTTTTAGTAAAGGC TERM 2351 1505926 - 1505946 + T 95 -11.2 -5.14563 | opp_overlap 1505926, overlap 1505945 AAGAAACGGAAAAAA GCTAACGG AAAAA CCGTTAGC TTTTTTAGTAAAGGC glnA 1507285 - 1505951 - | Glutamine synthetase TERM 2352 1507317 - 1507335 + r 86 -7.6 -5.14563 | opp_overlap 1507317 1507332 AAAATGAAAAGATCA TTTATGTT AAA AACATAAA TTTTTTAATGAAAAA TERM 2353 1507365 - 1507352 - R 78 -3.8 -5.26875 | TTTTTAATGAAAAAA GCGA GCGATA TCGC CTTGACGAAGTGAAG glnR 1507744 - 1507340 - | Transcriptional regulator, MerR family TERM 2354 1507758 - 1507770 + r 80 -6.3 -4.79384 | ATGTCGACCCCTCCT TACGT AAT ACGTA TTTTCATTTTATTCT Aflv_1509 1509113 - 1507845 - | Cystathionine beta-lyase family protein involved in aluminum resistance TERM 2355 1508312 - 1508299 - G 71 -6.7 -4.17516 | TGCAAACTATATAAA GAAGC GCCT GCTTC TCCCCCGATTCCTGG TERM 2356 1508400 - 1508412 + g 71 -4.8 -4.72272 | TCCCGTTTTTGCTAA TCCG CCACC CGGA TTTTTAATAAGCGAG TERM 2357 1508968 - 1508956 - G 86 -7.7 -4.67982 | opp_overlap 1508955 1508956 GTTGATGGAATAAAA TGAGC ATC GCTCA CTTGATGGTGACGAA Aflv_1510 1510374 - 1509127 - | GTP-binding protein protease modulator TERM 2358 1510069 - 1510090 + g 88 -10.9 -3.80516 | gap 1 GTCTAAAATAAGCTG CGTGCG-GTC AAT GACACGCACG TTTAATACCTTCGTT TERM 2359 1510782 - 1510764 - g 78 -5.2 -5.00616 | overlap 1510765 TGTTTCCGCAAAAAA TGCTACCA CAT TGGCAGCG GTGGGGGAACTTTTT TERM 2360 1510781 - 1510765 - g 75 -8.7 -3.60048 | overlap 1510764 GTTTCCGCAAAAAAT GCTACCA CAT TGGCAGC GGTGGGGGAACTTTT Aflv_1511 1510520 - 1511128 + | Predicted membrane protein TERM 2361 1511161 - 1511126 - T 95 -15.6 -2.87319 | opp_overlap 1511127, overlap 1511131 TTGAAGGCAGGAAAC TGAAACCGGATGTCTC GATG GAAACATCCGGTTTCT TTTTATTCTTCCCAC TERM 2362 1511127 - 1511160 + T 100 -16.9 -5.29445 | opp_overlap 1511126 1511131 TGAAGGCAGGAAACT GAAACCGGATGTCTC GATG GAAACATCCGGTTTC TTTTTATTCTTCCCA TERM 2363 1511156 - 1511131 - T 100 -14.1 -3.87149 | opp_overlap 1511127, overlap 1511126 GGCAGGAAACTGAAA CCGGATGTCTC GATG GAAACATCCGG TTTCTTTTTATTCTT Aflv_1512 1512336 - 1511164 - | Acetyl-CoA acetyltransferase mmgB 1513178 - 1512333 - | 3-hydroxyacyl-CoA dehydrogenase TERM 2364 1512381 - 1512403 + g 77 -8.5 -3.96148 | gap 1, overlap 1512398 TCGTCCAAGATGTCC CGCTTCGACA AGTT TG-CGAAGCG TTTGTGGTGGACGGA TERM 2365 1512869 - 1512887 + g 73 -2.5 -5.08824 | gap 1 GTTTCGTATAACGGT CAAGCTGT TCAA ACA-CTTG TTTTTTGAGTGGCAA mmgC 1514996 - 1513854 - | Acyl-CoA dehydrogenase TERM 2366 1514126 - 1514155 + g 78 -9.3 -3.6715 | gap 1, overlap 1514127 CTAAGGCAATTTCCG TCG-CCATTTCCGC CAA GCGGAACTGGACGG TTTGAAATTGGCTAA TERM 2367 1514127 - 1514154 + g 75 -10.6 -2.79968 | gap 1, overlap 1514126 TAAGGCAATTTCCGT CG-CCATTTCCGC CAA GCGGAACTGGACG GTTTGAAATTGGCTA TERM 2368 1514510 - 1514523 + g 74 -8.1 -3.96892 | opp_overlap 1514509 1514510, overlap 1514522 CGACGAGGACTAAAT CGGCA TGAA TGCCG TTTGTAATGAACGTT TERM 2369 1514522 - 1514536 + g 70 -2.8 -5.055 | opp_overlap 1514510 1514509, overlap 1514510 AATCGGCATGAATGC CGTTTG TAA TGAACG TTTTTTGCCCGTTGA TERM 2370 1514884 - 1514894 + g 70 -5.4 -4.44355 | overlap 1514881 CGCCAAAAATCACGT GGAA TGA TTCC TTGTTTTTCCCATTC Aflv_1515 1516568 - 1515009 - | Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II TERM 2371 1516419 - 1516434 + g 70 -7.6 -3.65426 | TCCTTTTCGCACACC CGCTTT TAAG AAAGCG TTTGCAAGTTTGTCC TERM 2372 1516645 - 1516610 - R 70 -7.9 -3.66742 | overlap 1516608 1516639 TCGATATAAATAATA TTTTTTATTTTCAGA TTATAT TCTGCAAATAAAAAA GAAACCCTTCTTTAC TERM 2373 1516694 - 1516674 - R 100 -12.7 -5.72616 | opp_overlap 1516674 ACTCACATAAAAAAA TAGGAAAGG CTC CCTTTCCTA TTCATTCAACAACTA TERM 2374 1516674 - 1516694 + r 87 -12.7 -3.34013 | opp_overlap 1516674 ACTCACATAAAAAAA TAGGAAAGG CTC CCTTTCCTA TTCATTCAACAACTA spoVK 1517625 - 1516696 - | Stage V sporulation protein K TERM 2375 1517735 - 1517712 - R 100 -10.3 -5.26875 | opp_overlap 1517710 1517708 1517712 TGCCTAACGAAAAAA TCGCCCACC GATATA GGTGAGCGA TATATCTTACTCAAT Aflv_1517 1517966 - 1517742 - | Uncharacterized host factor I protein miaA 1518937 - 1518002 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 2376 1519045 - 1519021 - R 70 -3 -5.03314 | TTCATTTTGAAAAAA TGTGAAAA AAACATCCA TTTTCACA TGACGCGTTTAAACA mutL 1520867 - 1519041 - | DNA mismatch repair enzyme (predicted ATPase) TERM 2377 1519814 - 1519829 + g 74 -7.6 -3.93819 | CTTTCACGATATGTT CAAACG AAAA CGTTTG TTGTTCTGCTTTCGT mutS 1523445 - 1520881 - | Mismatch repair ATPase (MutS family) TERM 2378 1523537 - 1523490 - R 77 -9.5 -3.47227 | opp_overlap 1523493 1523494 1523503 1523533, overlap 1523503 CTTCAATTATTATAA CAAAAAATAAAAACTAGGAAG AACAAA CTTCCTAGTTTTTATTGCTTC CTTCTTGAAGAAGCT TERM 2379 1523493 - 1523534 + r 74 -9 -3.53444 | opp_overlap 1523490 1523503, overlap 1523494 1523503 1523533 CAATTATTATAACAA AAAATAAAAACTAGGAAG AACAAA CTTCCTAGTTTTTATTGC TTCCTTCTTGAAGAA TERM 2380 1523494 - 1523533 + r 83 -12.5 -2.71745 | opp_overlap 1523490 1523503, overlap 1523493 1523503 AATTATTATAACAAA AAATAAAAACTAGGAAG AACAAA CTTCCTAGTTTTTATTG CTTCCTTCTTGAAGA TERM 2381 1523503 - 1523524 + r 93 -8.8 -5.20534 | opp_overlap 1523490 1523503, overlap 1523494 1523493 AACAAAAAATAAAAA CTAGGAAG AACAAA CTTCCTAG TTTTTATTGCTTCCT TERM 2382 1523524 - 1523503 - R 100 -8.8 -5.84011 | opp_overlap 1523503 1523494 1523493, overlap 1523490 AACAAAAAATAAAAA CTAGGAAG AACAAA CTTCCTAG TTTTTATTGCTTCCT cotE 1524090 - 1523521 - | Outer spore coat protein TERM 2383 1523805 - 1523819 + g 77 -8.6 -4.03978 | opp_overlap 1523804 TCAACGGAATGACAT CGGTAT AAG ATACCG TTTCTGTGAGCACTT TERM 2384 1523965 - 1523940 - G 75 -8.3 -3.75292 | opp_overlap 1523958, overlap 1523948 ACCGATGATTAATAA TCCAACAACCG AGCA CGCTCGTTGGA CGATGTTGCGCGGAA TERM 2385 1524215 - 1524195 - R 100 -7.6 -6.23317 | opp_overlap 1524195 ACAAAAATAAAAAAA GAGCCCAT GTAAA ATGGACTC TTTAATGGCAATGGC Aflv_1522 1524648 - 1524217 - | hypothetical protein TERM 2386 1524472 - 1524486 + g 74 -5 -4.86033 | TTTTCCGTAATGTTG CAAGTT TAC AGCTTG TTTTTGTAACGATTT Aflv_1523 1526233 - 1524650 - | 2-methylthioadenine synthetase TERM 2387 1524900 - 1524916 + g 77 -3.7 -5.16572 | opp_overlap 1524903, overlap 1524903 TTTACTAATGCATTT AAACGTT GTA AACGTTC TTTTTTCACTTCCAT TERM 2388 1524903 - 1524913 + g 73 -5.4 -4.67173 | opp_overlap 1524903, overlap 1524900 ACTAATGCATTTAAA CGTT GTA AACG TTCTTTTTTCACTTC TERM 2389 1526340 - 1526319 - R 88 -8.7 -4.72272 | opp_overlap 1526319 TTTTTCCATGAAAAA GAGGATGGC TTTC ACCACCCTC TTTTTTCTTACATAA TERM 2390 1526319 - 1526340 + r 89 -5.8 -5.4833 | opp_overlap 1526319 TTTTTCCATGAAAAA GAGGATGG CTTTCA CCACCCTC TTTTTTCTTACATAA Aflv_1524 1527235 - 1526348 - | 2-oxoglutarate ferredoxin oxidoreductase, beta subunit Aflv_1525 1528953 - 1527217 - | 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit TERM 2391 1529129 - 1529110 - R 100 -5.8 -5.81412 | opp_overlap 1529116, overlap 1529120 CCTATTGAAAAAAAA TTGCAACA TATT TGTTACAA AAATGTGAATTTTTC Aflv_1526 1530115 - 1529156 - | Zn-dependent dipeptidase, microsomal dipeptidase TERM 2392 1530156 - 1530126 - R 95 -11.3 -4.95758 | opp_overlap 1530129, overlap 1530129 AGCATATGATAAAAA TAACCTGTTTGCT ATACA AGCAAACAGGTTT ATGTGCATTAACGCG TERM 2393 1530153 - 1530129 - R 100 -13 -4.57057 | opp_overlap 1530129, overlap 1530126 ATATGATAAAAATAA CCTGTTTGCT ATACA AGCAAACAGG TTTATGTGCATTAAC TERM 2394 1530129 - 1530153 + r 100 -13 -4.09108 | opp_overlap 1530126 1530129 ATATGATAAAAATAA CCTGTTTGCT ATACA AGCAAACAGG TTTATGTGCATTAAC spoVS 1530424 - 1530164 - | Stage V sporulation protein S required for dehydratation of the spore core and assembly of the coat Aflv_1528 1531414 - 1530554 - | Calcineurin-like phosphoesterase TERM 2395 1531444 - 1531423 - R 90 -10.2 -4.44797 | opp_overlap 1531423 TTATCAATACGAAAA GCTACTCC AAACGA GGAGTAGC TTTATTTCGCATATT TERM 2396 1531423 - 1531444 + r 90 -10.2 -4.4572 | opp_overlap 1531423 TTATCAATACGAAAA GCTACTCC AAACGA GGAGTAGC TTTATTTCGCATATT Aflv_1529 1533011 - 1531446 - | Predicted HD superfamily hydrolase TERM 2397 1532652 - 1532663 + g 78 -4.4 -5.24129 | overlap 1532643 CTGTTGTCTTTCATT GAGA GAAT TCTC TTTTTTCTCAAGCAA TERM 2398 1533215 - 1533185 - R 100 -16.4 -4.65263 | opp_overlap 1533192, overlap 1533192 ATTTTCTAAAACAAA GTAAAAAGAGACAC AAC GTGCCTCTTTTTAC TCTAAGAAGTCTAAA TERM 2399 1533208 - 1533192 - R 90 -8.7 -5.1517 | opp_overlap 1533192, overlap 1533185 AAAACAAAGTAAAAA GAGACAC AAC GTGCCTC TTTTTACTCTAAGAA TERM 2400 1533192 - 1533208 + r 80 -6.5 -4.8048 | opp_overlap 1533192 1533185 AAAACAAAGTAAAAA GAGACAC AAC GTGCCTC TTTTTACTCTAAGAA recA 1534387 - 1533212 - | RecA/RadA recombinase (multifunctional SOS repair regulator) TERM 2401 1533306 - 1533320 + gr 73 -2.8 -5.08255 | TCACGTGCAATTTCT TCCATG ATA TGTGGA TTTTCTTTTAAAAAT TERM 2402 1534293 - 1534283 - GR 86 -6.8 -5.04249 | opp_overlap 1534283 CTTGCAAAAAATAAA GCAG TGA CTGC TACTTATTACTATAC TERM 2403 1534352 - 1534339 - GR 85 -2.4 -5.7946 | TTGCCAAGAAAAAAA CGAA TAGATG TTCG TAAATCAATGCAACA Aflv_1531 1535589 - 1534357 - | Competence-damage inducible protein TERM 2404 1535117 - 1535093 - GR 78 -2.1 -5.4505 | opp_overlap 1535067, overlap 1535094 TTTTGCAATAAAAAA GGACGTCCATA TTT CATGAACATCG GTTGCATTTCTTTTG pgsA 1536220 - 1535612 - | Phosphatidylglycerophosphate synthase ymfM 1537080 - 1536220 - | Uncharacterized HTH XRE-family DNA-binding protein TERM 2405 1536968 - 1536982 + g 73 -5.7 -4.44277 | TTTCCTTGTTCAATT GCGAT CAAAT ATCGC TTTTGGATTTTAGTG Aflv_1534 1537881 - 1537090 - | ACT domain containing protein TERM 2406 1538025 - 1538051 + r 77 -9.4 -3.52668 | opp_overlap 1538026, overlap 1538026 GATAAACATAGTAAA ACAAGCTGGCGA ATG TCACCAGCTTGC TTATATCGCTCGCTT TERM 2407 1538050 - 1538026 - R 100 -15.1 -4.47397 | opp_overlap 1538025 1538026 ATAAACATAGTAAAA CAAGCTGGCGA ATG TCACCAGCTTG CTTATATCGCTCGCT TERM 2408 1538026 - 1538050 + r 90 -12.9 -2.71119 | opp_overlap 1538026, overlap 1538025 ATAAACATAGTAAAA CAAGCTGGCGA ATG TCACCAGCTTG CTTATATCGCTCGCT Aflv_1535 1538319 - 1538065 - | hypothetical protein Aflv_1536 1539092 - 1538379 - | Dehydrogenase TERM 2409 1538908 - 1538885 - G 75 -5.2 -4.74801 | overlap 1538889 CAATTGGATGAAAAA GAGACGACAC TAAC GTATCGACCC CAGAAGGATGAGATA TERM 2410 1538974 - 1538988 + g 74 -4.3 -4.93898 | overlap 1538970 TGCTCCACTAACGAT TGAAC AGATC GTTCA TTTTTGTAGTAATGT Aflv_1537 1540379 - 1539099 - | Predicted Zn-dependent peptidase TERM 2411 1540186 - 1540199 + g 71 -2.3 -5.19212 | opp_overlap 1540181, overlap 1540187 TCTAAAAAATGGGCG ATGCC ATCC GGCAC TTTTTTCATGCTCGT Aflv_1538 1541764 - 1540376 - | Predicted Zn-dependent peptidase TERM 2412 1540520 - 1540500 - GR 70 -9.7 -2.55213 | opp_overlap 1540500, overlap 1540496 CACTCATCTAATGGA CGTTGTCGC GTC GCGATAACG TTATGATAAGAAATT TERM 2413 1540500 - 1540520 + gr 91 -11.9 -3.40899 | opp_overlap 1540500 1540496 CACTCATCTAATGGA CGTTGTCGC GTC GCGATAACG TTATGATAAGAAATT TERM 2414 1541487 - 1541498 + gr 73 -5.8 -4.4767 | TTCATCGACGGATGT CGCT CGGT AGCG TTTTGTAATACATAG Aflv_1539 1542620 - 1541700 - | Cysteine synthase TERM 2415 1541960 - 1541944 - GH 71 -5 -4.65078 | opp_overlap 1541949 1541950 ATAGGCGGAATAAAA CCTGGC CCAGT GCCTGG AATTTTATGTGGCCC Aflv_1540 1542733 - 1543125 + | Rhodanese-related sulfurtransferase TERM 2416 1543123 - 1543140 + T 91 -9.9 -4.56597 | opp_overlap 1543123 GGCGAAGTTGAAAAA TAGGAGG GAAG CCTCCTA TTTTTCAAACGAAAA TERM 2417 1543140 - 1543123 - T 93 -9.9 -4.66833 | opp_overlap 1543123 GGCGAAGTTGAAAAA TAGGAGG GAAG CCTCCTA TTTTTCAAACGAAAA topB 1545282 - 1543138 - | DNA topoisomerase TERM 2418 1544321 - 1544337 + g 75 -5.1 -4.85177 | TGTGAATCGGAGCGT GGATACG ATA CATATCC TTTTTGATATAGTTT TERM 2419 1545305 - 1545331 + r 73 -6.6 -4.26189 | opp_overlap 1545308, overlap 1545308 CCCCTTGACGAAAAG AAACCTGCTC AACTAGC GAGCAGGTTA TTTTGCAGTTTCTAC TERM 2420 1545328 - 1545308 - R 89 -9 -4.72007 | opp_overlap 1545305 1545308 CTTGACGAAAAGAAA CCTGCTCA ACTAG CGAGCAGG TTATTTTGCAGTTTC TERM 2421 1545308 - 1545328 + r 82 -8.3 -4.2354 | opp_overlap 1545308, overlap 1545305 CTTGACGAAAAGAAA CCTGCTC AACTAGC GAGCAGG TTATTTTGCAGTTTC spoIIIJ 1546111 - 1545329 - | Stage III sporulation protein J essential for sigma-G activity TERM 2422 1546123 - 1546082 - G 79 -11.1 -2.94099 | gap 1, opp_overlap 1546081 1546084 1546113, overlap 1546113 TTTTTTCACGATATA GCTCCTCCTTGTTTGTCTTA TGA TAAG-CAAACAAGGAGCATC CTTCCTTCTTCATCA TERM 2423 1546084 - 1546121 + g 93 -12.3 -2.90373 | gap 1, opp_overlap 1546082 1546113, overlap 1546081 1546113 TTTTCACGATATAGC TCCTCCTTGTTTGTCTTA TGA TAAG-CAAACAAGGAGCA TCCTTCCTTCTTCAT Aflv_1543 1546386 - 1546099 - | hypothetical protein tnrA 1546719 - 1546426 - | Transcriptional regulator, MerR family Aflv_1545 1546902 - 1547078 + | hypothetical protein Aflv_1546 1547011 - 1547175 + | hypothetical protein TERM 2424 1547741 - 1547777 + F 100 -5.9 -5.72622 | GGGCTAAAAATACAT CGGTATGTTTCACTT CATCTAT ACGTGAGGCATGCCG TTTTTTGTTTCTAAA Aflv_1547 1547804 - 1548163 + | hypothetical protein TERM 2425 1548243 - 1548193 - f 100 -17.2 -4.26076 | opp_overlap 1548198, overlap 1548198 TTATGGTCAGTAAAA GATAAGCCGGAAATATTTTTCGAT CCG ATCGAAAAATGTTTCCGGCTTTTT TGTTGAATATAAAAA TERM 2426 1548198 - 1548238 + F 100 -23.7 -5.49234 | opp_overlap 1548193 1548198 GTCAGTAAAAGATAA GCCGGAAATATTTTTCGAT CCG ATCGAAAAATGTTTCCGGC TTTTTTGTTGAATAT TERM 2427 1548238 - 1548198 - f 100 -21.5 -3.99481 | opp_overlap 1548198, overlap 1548193 GTCAGTAAAAGATAA GCCGGAAATATTTTTCGAT CCG ATCGAAAAATGTTTCCGGC TTTTTTGTTGAATAT TERM 2428 1548582 - 1548567 - g 73 -5.4 -4.62783 | CATTGATCGTAAAAA CGCAAC AGGT ATTGCG GCAACATATGGATCA Aflv_1548 1548283 - 1549272 + | Predicted permease TERM 2429 1549277 - 1549293 + T 100 -12.3 -5.79595 | opp_overlap 1549277 GGTTCTATTAAAAAA GCAAGGG GCT CCCTTGC TTTTTTATTTTCGAA TERM 2430 1549293 - 1549277 - T 100 -12.3 -5.14563 | opp_overlap 1549277 GGTTCTATTAAAAAA GCAAGGG GCT CCCTTGC TTTTTTATTTTCGAA Aflv_1549 1551049 - 1549298 - | hypothetical protein TERM 2431 1549369 - 1549351 - G 70 -7.4 -3.8591 | opp_overlap 1549350 1549351, overlap 1549354 TTGCATAACGAAGAA GAAGCGCA AAC TGCTCTTC GTTTATGTCATCTTT Aflv_1550 1551095 - 1552222 + | Glycine/D-amino acid oxidase (deaminating) Aflv_1551 1552254 - 1552904 + | Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling Aflv_1552 1552901 - 1553938 + | Glycerol-1-phosphate dehydrogenase NAD(P) TERM 2432 1553991 - 1553961 - f 90 -10.5 -4.46926 | gap 1, opp_overlap 1553960 TATTTCATGACAAAA TCGCCCACCCTACT GTTA AGGA-GGTGGGCGA GTTGAATCAAACGTT csgA 1553984 - 1554247 + | Sporulation-specific SASP protein TERM 2433 1554257 - 1554280 + T 82 -6 -4.88786 | ATTTGAGTAACAATG CCTAGCGC CTCGATTA GTGCTAGG TTTATTTCTTTTCAT Aflv_1554 1555632 - 1554511 - | Transposase TERM 2434 1554919 - 1554929 + g 78 -5.4 -4.94058 | CATAAAACGGTTTTC TTGC CCA GCAA TTTTCTTTAGCTTGC Aflv_1556 1556616 - 1556239 - | hypothetical protein TERM 2435 1556861 - 1556843 - R 91 -8.1 -5.20633 | opp_overlap 1556841 1556843 AAAAATATATAAAAA GGTGCCC GTCAT GGACACC TCTTTCTCTTTCTAC Aflv_1557 1558582 - 1556873 - | Signal transduction histidine kinase TERM 2436 1557459 - 1557447 - G 75 -3.3 -5.1361 | opp_overlap 1557457, overlap 1557457 ATAAATGCTAAAAAA CCGTG AAT CACCG CAAGCGGATTGCGAA TERM 2437 1559056 - 1559031 - R 85 -9.1 -4.14392 | opp_overlap 1559031 1559034, overlap 1559034 GTTCAACCGTTAAAA TAAGAGGGG CGCTCATC CCCCTCTTA TTTGAGTAATCTTAA TERM 2438 1559031 - 1559056 + r 76 -9.1 -3.71607 | opp_overlap 1559031 1559034, overlap 1559034 GTTCAACCGTTAAAA TAAGAGGGG CGCTCATC CCCCTCTTA TTTGAGTAATCTTAA TERM 2439 1559053 - 1559034 - R 71 -6.4 -4.19577 | opp_overlap 1559031 1559034, overlap 1559031 CAACCGTTAAAATAA GAGGGG CGCTCATC CCCCTC TTATTTGAGTAATCT Aflv_1558 1559284 - 1559054 - | Thioredoxin family protein TERM 2440 1559100 - 1559110 + g 81 -5.4 -5.09521 | GATAGCAACTTTCCT GTTG ATA CAAC TTTTTCATTTATTAC Aflv_1559 1560244 - 1559297 - | Predicted permease TERM 2441 1560011 - 1559996 - G 74 -4.7 -4.78753 | TGAACACGAACAAAA TGGTG ATACGA CACCA AGTAGAGCCGCTAAT TERM 2442 1560179 - 1560165 - G 90 -2.1 -6.02919 | overlap 1560166 TCATAAATAAAAAAA TGAAG TGCCC CTCCA AACTTTGAAGTAACC Aflv_1560 1560599 - 1560237 - | Transcriptional regulator, ArsR family Aflv_1561 1560866 - 1561294 + | Predicted permease TERM 2443 1561319 - 1561298 - T 93 -10.9 -4.90917 | AAACTCAAGTAAAAA GAGCCATCT TTAA AGATGGCCC CTACATATAAAGCAT mtlD 1562459 - 1561320 - | Mannitol-1-phosphate dehydrogenase TERM 2444 1562125 - 1562138 + g 78 -2.4 -5.58074 | overlap 1562120 ATGATATGAACAGGT CGAT CTGTTA ATCG TTTTTTTAATCCTTC mtlA 1562898 - 1562461 - | Phosphotransferase system (PTS) mannitol-specific IIA component TERM 2445 1562515 - 1562527 + g 71 -4.1 -4.89477 | opp_overlap 1562515, overlap 1562510 TGTCGTTGCAGAAAT CATCT TTT GGATG TTTTCTTCTTCCGAG TERM 2446 1562673 - 1562685 + g 71 -3.4 -5.06451 | CAATTGATAAACCCG CTTG CTTCA CAAG TTTTTTCGCATCCTC mtlR 1564974 - 1562899 - | Transcriptional antiterminator of mannitol metabolism TERM 2447 1565150 - 1565132 - R 87 -6 -5.23765 | TAAATAAGACAAAAA GGTAAGCA AAT CACTTACC TCAGACTGTTGACAA TERM