TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.562718 %AT, 1431637 nt, 6358 terms. Intergenic: 0.604983 %AT, H2T: 204866 nt, 643 terms; T2T: 46225 nt, 354 terms; H2H: 78114 nt, 746 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|15282445|ref|NC_000918.1| Aquifex aeolicus VF5, complete genome (length 1551335) fusA 1 - 2100 + | elongation factor EF-G TERM 1 2161 - 2150 - g 70 -5.8 -4.40732 | GAAAGGACAAAAGAA CACG TAAA CGTG GGAACAATAGGACAC tufA1 2117 - 3334 + | elongation factor Tu rpsJ 3346 - 3660 + | ribosomal protein S10 rplC 3665 - 4390 + | ribosomal protein L03 TERM 2 4380 - 4368 - f 74 -4.8 -4.67697 | TTGCAAAAGAAGAAA GCCA AGAGG TGGC TGAATCATGAAGATA TERM 3 4678 - 4644 - g 77 -11.4 -2.70543 | overlap 4648 4650 AAAGCCGAGAGACTA CGAATACCCTCTCCCT AAA AGGGTGAGGAAACTCG GACTTAAGATGGCTT TERM 4 4672 - 4650 - g 72 -9.8 -3.19563 | overlap 4648 4644 GAGAGACTACGAATA CCCTCTCCCT AAA AGGGTGAGGA AACTCGGACTTAAGA rplD 4387 - 4986 + | 50S ribosomal protein L4 rplW 4990 - 5301 + | ribosomal protein L23 TERM 5 5446 - 5432 - g 79 -2.8 -5.33405 | overlap 5414 5433 TCTACTAAAGAAAAA CCAAGT AGA ACCTGA AAAATCCCTCCTCAA rplB 5313 - 6227 + | 50S ribosomal protein L2 rpsS 6340 - 6900 + | ribosomal protein S19 rplV 7018 - 7314 + | ribosomal protein L22 rpsC 7317 - 7955 + | ribosomal protein S03 TERM 6 8112 - 8098 - g 70 -5.6 -4.44046 | TTCAGGGGAAATAAA CTGGCC TTT GGCGAG TACGGGATACAGGCC rplP 8017 - 8445 + | 50S ribosomal protein L16 rpmC 8457 - 8678 + | 50S ribosomal protein L29 rpsQ 8678 - 9001 + | 30S ribosomal protein S17 TERM 7 9022 - 8978 - f 73 -2.2 -5.28414 | gap 1, overlap 8983 8993 GAAGAAATACAAAAA CAACAGGAAGGACAA-GAACA GTAA TGCTCATCGCCGTTCCCCTTG ATGATACAAACTTTT aroD 9001 - 9660 + | 3-dehydroquinate dehydratase aq_022 10157 - 9657 - | hypothetical protein argD 11299 - 10169 - | N-acetylornithine aminotransferase nsd 12609 - 11296 - | nucleotide sugar dehydrogenase rodA 14005 - 12887 - | rod shape determining protein RodA TERM 8 13043 - 13011 - GR 77 -7 -4.45083 | gap 1, overlap 13030 13031 CCTACACTTACAAAA GGGAGAGGTATCCCG ACAA CGGGAAACAT-TCCC ATGGTCATCAGCGTG TERM 9 13486 - 13472 - GR 79 -8.6 -4.05446 | TCCGGCAAGGATAAA GTACCT TAA AGGTAC GCCTCTCACGAAAAG TERM 10 13703 - 13718 + gr 74 -9 -3.55444 | opp_overlap 13702 GACGTTGAAAAAGCC GAGGTG AAGC CACCTC TTTGCCCCGTAAACC TERM 11 13901 - 13886 - GR 100 -6.8 -5.60993 | GTGCTTATAAAAAAA CGGAGA GGTT CCTCCG TCGTAGGTAGCGCTG thiS 14183 - 13974 - | sulfur transfer protein involved in thiamine biosynthesis aq_026 14656 - 14174 - | hypothetical protein aq_027 16454 - 14676 - | hypothetical protein TERM 12 14763 - 14777 + g 100 -4.2 -5.64006 | overlap 14762 GTAATAACCCTGAGC CTCATC ACA GAGGAG TTTTTTTAGTTCCCT TERM 13 15320 - 15294 - G 70 -7.4 -3.87815 | gap 1, overlap 15298 GGCTACGGGGACAAA GATACTCGGAG GCACTT CTCCGAGT-TC AGGGTGATACCACCG TERM 14 15317 - 15298 - G 71 -9.3 -3.33798 | overlap 15294 ACGGGGACAAAGATA CTCGGAG GCACTT CTCCGAG TTCAGGGTGATACCA TERM 15 15611 - 15626 + g 70 -2.6 -4.9218 | overlap 15614 AATCTACGGAGTCTA CTTTTT CCTT AGAAAG TTTTTCTACTAACTC aq_028 17006 - 16527 - | hypothetical protein TERM 16 17011 - 17029 + H 74 -4 -5.0133 | overlap 17013 TTTGAGTACATCCTA TTTAAAAT TTA ATTTTAGA TTTTTTCAGGAGGTA moeA1 17053 - 18261 + | molybdenum cofactor biosynthesis protein A trnS 18275 - 19615 + | transporter aq_032 19620 - 21062 + | hypothetical protein aq_035 22346 - 21051 - | hypothetical protein TERM 17 21363 - 21375 + g 71 -4.9 -4.56597 | CACGTTCCTTTTCAA GATTT CTG AAATC TTTTTGAGAACGAGG aq_036 22379 - 22885 + | hypothetical protein aq_037 22998 - 23525 + | hypothetical protein TERM 18 24218 - 24207 - g 86 -2.2 -5.64873 | overlap 24208 GTTAAGAAGAAAAAA CTCC TCGA GGAA GACTTCTCAACGCAC hibD 23541 - 24407 + | 3-hydroxyisobutyrate dehydrogenase hisB 24982 - 24404 - | imidazoleglycerolphosphate dehydratase aq_040 26217 - 24997 - | hypothetical protein aq_041 26585 - 26274 - | hypothetical protein TERM 19 26614 - 26602 - R 91 -10.5 -4.61527 | opp_overlap 26595 AAAAGTTTTTAAAAA GCCCC AAA GGGGC GGATTAATGATATCC cyc 27340 - 26618 - | cytochrome c petB 28566 - 27337 - | cytochrome b petA 29125 - 28580 - | Rieske-I iron sulfur protein pyrD 29251 - 30171 + | dihydroorotase dehydrogenase phhB 30179 - 30478 + | pterin-4a-carbinolamine dehydratase TERM 20 31604 - 31592 - g 78 -6.3 -4.62392 | TAATAAGTAAAGAAA TCCAA TAC TTGGA AAAAATGGGTTACGT TERM 21 31680 - 31669 - g 73 -4.4 -4.8277 | AAAGATAAAAAAGAA GTGA ACGT TCAC GTAAAAATCAACAAA TERM 22 31783 - 31738 - g 76 -10.1 -3.40392 | gap 1, opp_overlap 31737, overlap 31755 AAAATAGAAAGTGAA CTTTTCGAGGATTTAAATGAAA AAA TTTCACTTAAATTCCCG-AAAG CCTTGGATTACGAAA TERM 23 32407 - 32421 + G 72 -10 -2.89564 | TACGAATTATTTACG GAAGGC TTT GCCTTC TCTCTGGGATACAGG TERM 24 32649 - 32632 - g 78 -5.7 -4.94811 | opp_overlap 32636 GGAAAAATAAAGAAA GAATTTT TTGA AAAATTC GGTTCAAGGCTGAAA aq_050 30475 - 33036 + | hypothetical protein TERM 25 33013 - 33024 + T 80 -4.4 -5.18726 | overlap 33008 AGGCTTAAGTTTTAC CTCT CGGT AGAG TTTTTCTTCTAAAGG ubiA 33887 - 33033 - | 4-hydroxybenzoate octaprenyltransferase TERM 26 33573 - 33559 - G 76 -2.8 -5.21709 | GGGGAGAGTAAAAAA GCTAAA AAG TTGAGC ATAAGGGAGGCAAAA mraY 34963 - 33884 - | phospho-N-acetylmuramoyl-pentapeptide-transferase aq_054 35580 - 34963 - | hypothetical protein TERM 27 35217 - 35231 + gH 70 -2.8 -5.02777 | opp_overlap 35217, overlap 35212 CCGTTCCCACGAGAA GAGG TCTCCTT CCTC TTTCTTTTTCTATGT hemX1 35564 - 36322 + | cytochrome c biogenesis protein fabZ 36758 - 36306 - | (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase TERM 28 36457 - 36470 + g 79 -5.2 -5.03314 | opp_overlap 36450 36467 AGTATAAGCTGGTCT CCCG GGTAAA CGGG TTTTTTAAACCTCGC sfsA 36782 - 37426 + | sugar fermentation stimulation protein aq_058 37923 - 38273 + | hypothetical protein aq_059 38395 - 38922 + | hypothetical protein mogA 39459 - 38923 - | molybdenum cofactor biosynthesis protein speE 39496 - 40338 + | spermidine synthase rpsF 40413 - 40745 + | ribosomal protein S06 TERM 29 41099 - 41085 - g 77 -10 -3.52995 | overlap 41083 41092 41093 TCAAGCAGAAGAAGA GGAGGA AGT TCCTCC CATTGAGGAGGAAAT ssb 40735 - 41178 + | single stranded DNA-binding protein rpsR 41197 - 41415 + | ribosomal protein S18 aq_064b 41470 - 41649 + | hypothetical protein aq_064c 41650 - 41883 + | hypothetical protein aq_065 42773 - 41880 - | hypothetical protein TERM 30 42242 - 42264 + g 80 -7 -4.75219 | opp_overlap 42242 AAATTAACTTGTAAA GTGTTTTTCC CAT GGAAAGCCAC TTTTGTTCATACTTG TERM 31 42891 - 42905 + G 74 -10 -3.22774 | GGGCTTGCGAGGCGC TTCGGG ATA CCCGAA TTCGTAATAGGTCTG aq_066 42795 - 43763 + | hypothetical protein dmsB2 44268 - 43756 - | dimethylsulfoxide reductase chain B rplQ 44857 - 44501 - | ribosomal protein L17 TERM 32 44539 - 44560 + g 80 -6.5 -4.84492 | CCATTTCAGCTCCGT CTCCTCTTC TCCT GTAGGGGAG TTTTATTATCCTTAC rpoA 45816 - 44863 - | DNA-directed RNA polymerase subunit alpha TERM 33 45139 - 45165 + g 71 -8 -3.73234 | overlap 45137 TTCCGTAAATATGTT CTCAAGGAGTTC GTA GTGCTTCTTGAG TATTTCTATTGCTTC rpsD 46464 - 45829 - | 30S ribosomal protein S4 rpsK 46842 - 46465 - | 30S ribosomal protein S11 rpsM 47238 - 46858 - | 30S ribosomal protein S13 rpmJ 47365 - 47216 - | ribosomal protein L36 infA 47668 - 47426 - | initiation factor IF-1 map 48447 - 47671 - | methionyl aminopeptidase TERM 34 48289 - 48277 - G 75 -4.8 -4.78149 | opp_overlap 48280 TTTATAACCTAAAAA GGCA GGCTT TGCC CCTCTCTTTTCGGTT kad 49057 - 48437 - | adenylate kinase TERM 35 48665 - 48677 + g 80 -9.1 -4.14859 | CACGTGGTAAACCTC TCCCG TTT CGGGA TTTATCCTTCTTCCT secY 50351 - 49062 - | preprotein translocase subunit SecY rpmB 50396 - 50605 + | ribosomal protein L28 aroC 50605 - 51801 + | chorismate synthase aq_082 51803 - 52405 + | hypothetical protein aq_083 53406 - 52390 - | hypothetical protein TERM 36 53515 - 53504 - H 81 -5.8 -5.17054 | overlap 53506 AGAAGAGCCAAAAAA GGGA AAAA TCCC ATAGTAACCTTTCCC kdsA 53671 - 54474 + | 2-dehydro-3-deoxyphosphooctonate aldolase modC 54471 - 55133 + | molybdenum ABC transporter permease TERM 37 55163 - 55144 - f 78 -10.8 -3.03124 | opp_overlap 55143 TTTGACGTTGCAACA GTGTTGCA ACAC TGCAACAC CTTCCTGAAACGCCC aq_087 55256 - 55597 + | hypothetical protein aq_088 55612 - 55947 + | hypothetical protein TERM 38 56082 - 56049 - g 76 -3.9 -5.08601 | GGAGTGGAACAAAAA CGAAAAGTTAATGAA CGAC CTCAAAAACTTCTCG GCGAGTATAAAGTAC aq_090 55975 - 56379 + | hypothetical protein TERM 39 56512 - 56525 + G 74 -2.3 -5.24449 | GGTAAAGGAGGGAGA GTCCT GCAG GGGGC TTTTTTCCATTTGTG TERM 40 57910 - 57886 - g 77 -10.1 -3.53343 | opp_overlap 57891, overlap 57891 AAGGGCTGGGGGAAA CAAAAGCCTTG CGG CAAAGCTCTTG GGTATCCACAGGACC TERM 41 57905 - 57891 - g 80 -6.4 -4.86731 | opp_overlap 57891, overlap 57886 CTGGGGGAAACAAAA GCCTTG CGG CAAAGC TCTTGGGTATCCACA aq_091m 56372 - 57964 + | AAA ATPase family protein nrdA 60366 - 57961 - | ribonucleotide reductase alpha chain TERM 42 58146 - 58187 + g 72 -5.7 -4.4648 | ACTTCTGCCTTACCG CCGCCGCCCTTATGGTCCA CTCG TGGTCTATAGTGTAGGCGG TTTTGTAGTGCCAGT aq_097 61675 - 60452 - | hypothetical protein secG 61696 - 61998 + | protein export membrane protein SecG TERM 43 62540 - 62518 - gf 73 -7 -4.18802 | overlap 62510 62530 ATACATACCCGAAAA CTTCTGGGAA ATT CTTCCAGAAG AAGTAAAAAAGGAGG hemK 61934 - 62779 + | protoporphyrinogen oxidase TERM 44 62813 - 62823 + G 72 -3.2 -5.02074 | TTTTCTTCTTCATAA TCCT TGA GGGA TTTTTTGCAGGGTCA hly3 62770 - 64020 + | hemolysin aq_103 64726 - 63986 - | hypothetical protein TERM 45 64522 - 64533 + g 83 -3 -5.49729 | AAAGGGTTAAAGATT TTTC CTTG GAAA TTTTTTTGAGTACTT aq_104 65841 - 64729 - | hypothetical protein rbfA 66151 - 65828 - | ribosome-binding factor A aq_106 65727 - 66446 + | hypothetical protein fdx4 66706 - 66903 + | ferredoxin hfq 67142 - 66900 - | host factor I glnB 67339 - 67677 + | nitrogen regulatory PII protein glnA 67698 - 69107 + | glutamine synthetase TERM 46 69119 - 69133 + F 100 -12.8 -4.39002 | TTAAACAAATTCTCG GGGGCG TTT CGCCCC TTTTATAAAAACTTT amtB 69169 - 70440 + | ammonium transporter TERM 47 70700 - 70737 + G 100 -11.4 -4.87626 | gap 1, overlap 70733 CTTGCTGTAGGCGGT TCTCTCTGGTCCACCGT ATGGG ACGGCGGAC-AGGGAGA TTTTTCCTATTACGA TERM 48 70816 - 70832 + G 72 -8.1 -3.88787 | opp_overlap 70814 70815 CGCCTACCTGAAACC CTTCAAA GGC TTTGAAG TTTCTGCCGGTGTAC aq_113 70454 - 71500 + | hypothetical protein TERM 49 71684 - 71705 + T 73 -8.1 -3.93057 | TCTATTCCCTCTCTC CGATAGAGT TCAA ACTTTATCG TTTCGTCCTTTTGAG aq_114 72243 - 71803 - | hypothetical protein aq_116 74122 - 72560 - | hypothetical protein pgk 75316 - 74123 - | phosphoglycerate kinase talC 75981 - 75328 - | putative translaldolase aq_121 77038 - 76010 - | hypothetical protein hisS1 78246 - 77035 - | histidyl-tRNA synthetase TERM 50 77146 - 77130 - G 75 -9.4 -3.4252 | opp_overlap 77118 77129 77128 77145, overlap 77142 CTTCACCGATGATAA CGGCGT ATTTA ACGCCG AGTTTGTCGGCAAAC rpsP 78328 - 78666 + | ribosomal protein S16 aq_124a 78663 - 78902 + | hypothetical protein aq_125 78902 - 79300 + | hypothetical protein aq_126 79305 - 79748 + | hypothetical protein aq_128 81808 - 80390 - | hypothetical protein TERM 51 80459 - 80482 + Gg 72 -7.4 -4.0896 | TCCCTCGGGCTCTTC CTCCTTCTGG AAGG TCTGAAGGAG TTTTCCCACGACTTT aq_127 79748 - 80566 + | hypothetical protein TERM 52 80860 - 80885 + gF 72 -9.1 -3.40867 | gap 1, overlap 80861 AGTGGGCGGAGGTGT TTACCGCGTGAA CCA TTC-CGCGGTAG TTCCTTGCTCCGTAA TERM 53 80861 - 80884 + gF 72 -10.4 -2.64199 | gap 1, overlap 80860 GTGGGCGGAGGTGTT TACCGCGTGAA CCA TTC-CGCGGTA GTTCCTTGCTCCGTA TERM 54 81191 - 81179 - Gf 81 -3.3 -5.36441 | GGTGTATATAAAAAA GGCGA GTA TCTCC GAAATCGCTATTCCC TERM 55 81664 - 81642 - Gf 72 -4.6 -4.71061 | overlap 81628 AGCGAGAGGGAAAAA CCCGTCGCCG CAA CCGCGGAGGG AGAAATGGAGGAAAC ribH 81823 - 82287 + | riboflavin synthase beta subunit nusB 82284 - 82730 + | transcription antitermination protein NusB aq_134 82932 - 83387 + | hypothetical protein nueM 83384 - 84331 + | NADH dehydrogenase (ubiquinone) cpx 84354 - 85421 + | cytochrome c peroxidase ribD1 86488 - 85418 - | riboflavin specific deaminase ribF 87429 - 86485 - | riboflavin kinase pkcI 87801 - 87436 - | protein kinase C inhibitor TERM 56 88148 - 88136 - H 72 -3.3 -5.12068 | overlap 88137 TATACTTAATAAAAA TTCCC TAT GGGAG GTAAGGCATGAGGAA TERM 57 88283 - 88271 - g 82 -9.1 -4.20783 | AGTTCATGGAAGAAA TCGCC GAA GGCGA AGGAAGGGACGCCAT aq_142 88156 - 88596 + | hypothetical protein rfaC2 88593 - 89546 + | ADP-heptose:LPS heptosyltransferase cobW 89543 - 90421 + | cobalamin synthesis related protein CobW deoC 90418 - 91077 + | deoxyribose-phosphate aldolase gltA 91085 - 91864 + | citrate synthase tlpA 91861 - 92301 + | thiol disulfide interchange protein ctaA 92881 - 93771 + | heme O oxygenase TERM 58 93940 - 93957 + G 74 -9.8 -3.40299 | TCGGTACGGGACTTG CCGCGG CAGGTT CCGCGG TTCTCAATATGGTAA ctaB 93768 - 94646 + | cytochrome c oxidase assembly factor TERM 59 94876 - 94890 + G 79 -4.2 -5.31275 | TTCGCAAGCTTCCTT CCCG CACTGCT CGGG TTTTTTATGATAGCG aq_155 94648 - 95808 + | hypothetical protein aq_156 96008 - 96406 + | hypothetical protein TERM 60 96579 - 96563 - g 84 -9.5 -4.16146 | AAAAGAGCTCGAAAA GTATCAG AAG CTGATAC AGGAAAAGCAAAAAA aq_157 96408 - 96896 + | hypothetical protein apfA 96893 - 97297 + | AP4A hydrolase aq_159 97835 - 97287 - | hypothetical protein TERM 61 98476 - 98453 - H 70 -8.4 -3.29043 | AACCTCTCCTTAGAA TATCTTAAAA CAAA TTTTAAGATA GAATTATTGAACGTA TERM 62 98874 - 98894 + G 87 -6.9 -5.24989 | overlap 98883 CCTGAAAGTCCCCCA TCCCTTTCT GGA AAAAAGGGA TTTTTTCGTCTATCC folK 98536 - 99018 + | folate biosynthesis 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase TERM 63 100319 - 100309 - g 70 -2.6 -4.9725 | ACTTGTACAGAAAAA TAAA AAG TTTA AACATAAGAGTCAAA ntrC4 99015 - 100343 + | NtrC family transcriptional regulator aq_165 101019 - 100330 - | hypothetical protein TERM 64 100405 - 100416 + gF 72 -4.4 -4.67755 | opp_overlap 100405 TGGCTCTAAAAGAAC GGAT TTAA ATCC TTTTTCCCTCAGTAT proC 101014 - 101811 + | pyrroline carboxylate reductase aq_167 101772 - 102392 + | hypothetical protein aq_168 102898 - 102389 - | hypothetical protein aq_169 103296 - 102853 - | hypothetical protein bioA 104660 - 103299 - | DAPA aminotransferase TERM 65 103477 - 103491 + g 76 -4.2 -5.04733 | overlap 103464 103478 GTCCTTTCACCGTAA GGGAAA GGT TCTCCC TTTTCTTTGTCCTTC TERM 66 103957 - 103947 - G 77 -6.8 -4.57073 | TACGCCTTTCAAAAA TCCC GGA GGGA AGGGGAGCATTCCCG TERM 67 104077 - 104056 - G 78 -8.7 -4.15222 | opp_overlap 104069 104071 AGTTGTTTTAATAAA TCTGCCGTG CACT CAGGGCAGA GTTCCCCGTACTTTT aq_171 104858 - 105598 + | hypothetical protein mutY2 106574 - 105912 - | endonuclease III aq_173 107290 - 106547 - | hypothetical protein aq_175 108795 - 107287 - | hypothetical protein TERM 68 108272 - 108259 - G 72 -8.1 -4.00468 | opp_overlap 108259 108258 AGGAGAACCTACAAA CACCC AGAA GGGTG GTTTTAATCCTTCAA TERM 69 108621 - 108645 + g 81 -2.3 -5.58074 | gap 1 CGAGCATTAACTGGG GAAG-GTTTA CGTTTT TAAACTCTTC TTTTTTTACTACTTC aq_175a 108998 - 108792 - | hypothetical protein rpmH 109145 - 109002 - | ribosomal protein L34 atpE 109491 - 109189 - | ATP synthase F0 subunit c aq_178 109914 - 109507 - | hypothetical protein atpB 110566 - 109916 - | ATP synthase F0 subunit a TERM 70 110207 - 110183 - G 80 -5.7 -5.16071 | AACCACGAAGAAAAA GGGAGCCAT TAGAGGT ATGGGTCCC ATAAAGTGTTTCAAA TERM 71 110280 - 110270 - G 70 -5.4 -4.43307 | GTGGTAATAAAAGAA CACT AAA AGTG CTAAAGCTAGGTTGG hisF 110616 - 111377 + | HisF (cyclase) aq_182 112101 - 111355 - | hypothetical protein aq_183 113304 - 112111 - | hypothetical protein TERM 72 113291 - 113277 - G 70 -2.9 -4.89519 | AGAAGAGAAAAGAAA TACTT AATAA AAGTA GAAAAAGTATCATTC rpoZ 113531 - 113301 - | RNA polymerase omega subunit TERM 73 113353 - 113383 + g 100 -4.2 -5.61596 | gap 2 ATTATCTTTACCTTC CCTTC-C-GCAATA TCTTC TATTGCTGCGAAGG TTTTTTTGTGAACCT aq_184 113844 - 113515 - | hypothetical protein TERM 74 113964 - 113977 + r 76 -6.7 -4.37544 | CGTTCGCGTACTCGA GGAAG AAGC CTTCC TTTATCTTCTTCTCA tagD1 114652 - 114179 - | glycerol-3-phosphate cytidyltransferase aldH1 116079 - 114649 - | aldehyde dehydrogenase hslU 117442 - 116090 - | ATP-dependent protease ATP-binding subunit aq_194 117884 - 117420 - | hypothetical protein trpD1 117938 - 118960 + | phosphoribosylanthranilate transferase aq_197 118960 - 120162 + | hypothetical protein aq_199 120228 - 121451 + | hypothetical protein aq_200 121448 - 122074 + | hypothetical protein TERM 75 122628 - 122612 - g 71 -2.2 -5.14949 | overlap 122614 AAGAAAAGAACAAAA TATCCC ACAGG GGGAGA GCTTTAAGAAAGCTC aq_202 122071 - 122679 + | hypothetical protein TERM 76 122775 - 122757 - g 83 -3.8 -5.42862 | overlap 122758 ACAGGTTTAAAAAAA CGAGACAC ATA GTCTCTCA AGAGTATCCCTACTT atpG2 122663 - 123844 + | ATP synthase F1 gamma subunit aq_204 124700 - 123819 - | hypothetical protein TERM 77 125918 - 125897 - g 80 -8.9 -4.1523 | opp_overlap 125902, overlap 125902 GGTAATCAGAAATAA CAAAATTGT AGGA ACAATTTTG TATGGAGATGTAAGG TERM 78 125913 - 125902 - g 73 -3 -5.05116 | opp_overlap 125902, overlap 125897 TCAGAAATAACAAAA TTGT AGGA ACAA TTTTGTATGGAGATG nirB 124821 - 127829 + | nitrite reductase (NAD(P)H) large subunit cobA 127845 - 128579 + | uroporphyrin-III c-methyltransferase trpD2 128584 - 129513 + | phosphoribosylanthranilate transferase fhp 129647 - 130066 + | flavohemoprotein cynS 130079 - 130528 + | cyanate hydratase glnBi 130544 - 131161 + | PII-like protein GlnBi TERM 79 132223 - 132211 - g 73 -10.5 -3.01712 | opp_overlap 132206 TTTTCCCTCGTAACA CCGCC TCT GGCGG TAGGTATAGTTTTAT nasA 131158 - 132585 + | nitrate transporter narB 132582 - 134582 + | nitrate reductase narB TERM 80 134578 - 134589 + T 76 -2.2 -5.41746 | opp_overlap 134571, overlap 134571 TTGTAAAAGTAAATA GGTG AATT TACC TTTTTTTGGGGAGTT nifA 136105 - 134585 - | NifA family transcriptional regulator TERM 81 134687 - 134701 + g 71 -2.1 -5.1485 | TTTTATGACAAATCC GCTTT CTTCC AAGGC TTTTTCTATTAATTG TERM 82 135380 - 135369 - G 70 -5.8 -4.38712 | TTTATCGCGACAAAA GGCT TATC AGCC CTTGGGCTGAGGAAA dut 136574 - 136122 - | deoxyuridine 5'triphosphate nucleotidohydrolase TERM 83 136432 - 136446 + g 71 -4.2 -4.86385 | opp_overlap 136431 136433, overlap 136422 136433 CCCGTGGGTATCAAT ACCCTT TCA AAGGGC TTTATTTTTAGGGGT phpA 138894 - 136567 - | polynucleotide phosphorylase/polyadenylase TERM 84 137124 - 137103 - G 74 -2.3 -5.19879 | CGGGAAATACAAAAA GGTAAAC CTTTCCTT GTTCACC TACCCATACCTTAAC TERM 85 138782 - 138762 - G 77 -10.4 -3.48276 | GCTCGTCCGACATAA CCGCGGTC ACGAG AACCGCGG TACCGCCCTGCCTGA rpsO 139169 - 138897 - | ribosomal protein S15 TERM 86 138971 - 138982 + g 75 -4.4 -4.88918 | opp_overlap 138971 CCCTCAAGTACTCAA GAAG CTTC CTTC TTTTGTTTACCATAG aldH2 141390 - 139228 - | aldehyde dehydrogenase TERM 87 141050 - 141063 + g 75 -9.5 -3.47617 | overlap 141055 TCTACGTACTTTTTA CCCGC GGGT GCGGG TTCTACCTTTACCCT TERM 88 141875 - 141858 - gR 89 -5.5 -5.4505 | overlap 141860 CTCCTTAAGAAAAAA CTCGAAG AACA CTTCGTG GTAGAAACTGCAAAA TERM 89 142744 - 142720 - gR 73 -7.9 -3.85165 | overlap 142742 CAGTGGAAATCGAAA TCCCTCCTCTC AGG GAAAGAAAGGA AGACATACCCCTCCT TERM 90 142755 - 142766 + Gr 75 -5.8 -4.72272 | opp_overlap 142742 142752, overlap 142754 AAGGAAGACATACCC CTCC TCGT GGAG TTTTTCCTGAAGAAA hksP4 144113 - 143094 - | histidine kinase sensor protein ntrC3 141804 - 143150 + | NtrC family transcriptional regulator TERM 91 144164 - 144187 + FH 77 -8.2 -4.21933 | opp_overlap 144167, overlap 144158 144167 TGTCAAGTTTGTCAC TAAGGTGTCA TTTT TGACACCTGA TTCTTTTCAAGTTCC TERM 92 144167 - 144184 + FH 73 -9.9 -3.10981 | opp_overlap 144167, overlap 144158 144164 CAAGTTTGTCACTAA GGTGTCA TTTT TGACACC TGATTCTTTTCAAGT TERM 93 144184 - 144167 - fH 73 -9.9 -3.14881 | opp_overlap 144158 144167 144164 CAAGTTTGTCACTAA GGTGTCA TTTT TGACACC TGATTCTTTTCAAGT TERM 94 144910 - 144884 - g 71 -9.4 -2.99471 | opp_overlap 144882 144906, overlap 144906 CCACCTCCACACAGA TGTCCTCCCGCA CCT TACGAGAGGGCA GCTATGATAGCGCAC dhsU 144275 - 145585 + | flavocytochrome C sulfide dehydrogenase soxF 145595 - 146311 + | Rieske-I iron sulfur protein TERM 95 147085 - 147072 - g 75 -4.5 -5.0133 | GACCCCGTCAAAAAA GTGGC AAGA ACCAC GAAAGGCGACATAAA fccB' 146292 - 147545 + | sulfide dehydrogenase, flavoprotein subunit guaA 149078 - 147546 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 96 147854 - 147867 + g 74 -3.1 -5.08601 | AATCCGCCTTCCTCA GGATT TCTA AGTCC TTTTTATTCACCTCA TERM 97 148851 - 148838 - G 72 -6.7 -4.1673 | GAAGCCCGTAACAAA TCCCA AGTA TGGGA ACACCGAGCTCGTAA TERM 98 148931 - 148941 + g 91 -6.8 -5.3321 | opp_overlap 148931 CTCCCGAGAATATAA TCCC GTA GGGA TTTTTCTTCTTAATT sodC2 149124 - 149639 + | superoxide dismutase (Cu/Zn) folE 149720 - 150274 + | GTP cyclohydrolase I aq_240 151173 - 150271 - | hypothetical protein TERM 99 152998 - 152979 - g 70 -5.6 -4.3739 | overlap 152980 152981 GAGCTCGTCAGAAAA CTCCTCGG AGTT CCGAGGTA CAGACCTGAAAGGGA TERM 100 152996 - 152981 - g 70 -10.4 -2.52946 | overlap 152980 152979 GCTCGTCAGAAAACT CCTCGG AGTT CCGAGG TACAGACCTGAAAGG lon 151206 - 153593 + | Lon protease TERM 101 153589 - 153575 - T 70 -7.8 -3.74345 | opp_overlap 153576, overlap 153576 AGTGAGAGAGCCAAA GCCCCT CAA AGAGGC GTGATCTCTATAAGG aq_243 155067 - 153580 - | hypothetical protein leuB 156148 - 155054 - | 3-isopropylmalate dehydrogenase TERM 102 155977 - 155994 + g 78 -6.3 -4.61199 | gap 1 TCTTCAGAGTTTCTT CGGGAAGA GGA TCT-CCCG TTTTGTCTATCGCCT TERM 103 157100 - 157084 - g 76 -8.1 -4.24963 | overlap 157099 CAGAATCAGGGAAAA GCTTTTT CTG AAAAAGC ACGGTTTTCCCGTGC TERM 104 157115 - 157099 - g 89 -9.4 -4.56597 | opp_overlap 157109 157109, overlap 157084 GCTTTTTCTGAAAAA GCACGG TTTTC CCGTGC CGGAGTTTTTAGTAA purK 156794 - 157891 + | phosphoribosylaminoimidazole carboxylase ATPase subunit aq_246 158696 - 157857 - | hypothetical protein gatA 160132 - 158696 - | glutamyl-tRNA (Gln) amidotransferase subunit A TERM 105 159255 - 159269 + g 70 -5.7 -4.41616 | GAGTACTTAACGTGG GGAAG GGAAA CTTCC TTTATTTCAAAGCCT TERM 106 159944 - 159954 + g 71 -4.6 -4.69559 | overlap 159943 TGGAATACCAAATAG GGGG AGC TCCC TTTCTTTTAAGCTTT aq_250 160582 - 160145 - | hypothetical protein TERM 107 160450 - 160462 + g 85 -9.1 -4.38092 | TCTGTCCTATGTCTT CCCAG TCC CTGGG TTCTTTTGATTCTTC aq_251 161309 - 160629 - | N-glycosylase/DNA lyase TERM 108 161274 - 161284 + g 72 -3.2 -4.90266 | GTACTTTTGAACCTC GGGT ATT ATCC TTTTTACTTCCTGAA aq_252 161744 - 161325 - | hypothetical protein TERM 109 161389 - 161402 + g 71 -3.8 -4.79352 | opp_overlap 161389, overlap 161379 TTTATCCTTGAAAAT GCCT CTTCCA AGGC TTTTCTTCTGGGTAG kdtB 162217 - 161732 - | lipopolysaccharide core biosynthesis protein TERM 110 162852 - 162838 - g 73 -10 -3.01003 | CGAAGATATCAGAGA GCTCCT TGA AGGAGC TGTAAAGTACGCCAA aq_254 162752 - 163159 + | S-adenosylmethionine decarboxylase proenzyme aq_255 163193 - 163678 + | hypothetical protein ygcA 165377 - 164100 - | RNA methyltransferase nusA 166371 - 165358 - | transcription elongation factor NusA TERM 111 165530 - 165549 + g 70 -2.8 -4.94487 | ACGGCAACTTCTGCC CTCTTCTC GTAA GGGAAAAG TTTTATCTTTTCTGG TERM 112 165569 - 165586 + g 70 -5.5 -4.32951 | ATCTTTTCTGGATGT GCGGG AGCAAGTG CCCGC TTTATTAATTCCGCT aq_260 166841 - 166365 - | hypothetical protein aq_262 168155 - 167586 - | hypothetical protein TERM 113 168682 - 168670 - H 95 -2.7 -6.38039 | CACCCAAAAAAAAAA TGCTT ACC AAACA ATTGAGAGAACTGGA hemC 168918 - 169889 + | porphobilinogen deaminase aq_265 171491 - 170475 - | hypothetical protein aq_264 169886 - 170539 + | hypothetical protein TERM 114 171939 - 171952 + G 75 -5.3 -4.74132 | TTAAAAACTTCTATC CCTTA ACCG TAAGG TTTTTACTCGCCTCT TERM 115 172543 - 172525 - g 74 -7.4 -4.2679 | overlap 172531 GAAGGTTCAGGAAAA GGAAAACC CAG GGTTTACC ATGGGCGATCTGGTG TERM 116 172548 - 172531 - g 79 -6.9 -4.70319 | overlap 172525 TCAGGAAAAGGAAAA CCCAGGG TTTA CCATGGG CGATCTGGTGAACGA aq_267 171596 - 172732 + | hypothetical protein aq_268 172848 - 173318 + | hypothetical protein aq_269 173826 - 173338 - | hypothetical protein lgt 173860 - 174678 + | prolipoprotein diacylglyceryl transferase aq_271 174675 - 175886 + | hypothetical protein aq_272 176328 - 175879 - | hypothetical protein aspC4 176409 - 177572 + | aspartate aminotransferase TERM 117 178160 - 178147 - g 74 -6.7 -4.4009 | CCTTACTTCAGAAAA CTCAG GGAA CTGAG GGACGAGCTCCAAAG aq_274 177613 - 178299 + | hypothetical protein aq_276 179963 - 178587 - | hypothetical protein TERM 118 178632 - 178654 + g 73 -6.2 -4.43272 | TGTTGAGACGTACCT GTGGGGGAGT TTA ATCCCTCCAC TTTTCAGTTTTGGAT aq_277 181378 - 179960 - | hypothetical protein TERM 119 180362 - 180372 + g 71 -2.4 -5.06016 | opp_overlap 180362 CTCTATTGTAAAAAT CGGG TAG CCCC TTTTGTTTATCTCGT TERM 120 181164 - 181180 + g 88 -3.7 -5.52909 | opp_overlap 181164, overlap 181178 TTTTCCTGCAGGGAA CTCCT TTCTTTT AGGAG TTTTTTTAGCTCTTC aq_278 183210 - 181375 - | hypothetical protein TERM 121 182526 - 182545 + g 72 -10 -2.93252 | overlap 182524 TTTGATACTCCCACG CTTCCCTG AGAG CGGGGAAG TAGTTGTTCGGACCT TERM 122 182748 - 182758 + g 76 -5.4 -4.8143 | GGACTTTTTTAGGGT CGTA CTT TACG TTTTTCACTTCTTCG acrR3 183774 - 183235 - | TetR/AcrR family transcriptional regulator TERM 123 183903 - 183881 - H 91 -10.7 -4.45577 | ACAAATCCCATAAAA TCTTCCCTT ATGAA AAGGGAAGA CGTGCCTAAAGTTCT mutY1 183890 - 184531 + | endonuclease III aq_283 185025 - 184528 - | hypothetical protein aq_284 186344 - 185022 - | hypothetical protein aq_286 186900 - 186373 - | hypothetical protein smpB 187373 - 186900 - | SsrA-binding protein TERM 124 187249 - 187259 + g 72 -6.8 -4.18018 | opp_overlap 187233 187225 187222, overlap 187226 GAAACGGTTCCCTTT TCCC TCA GGGA TTTTACCTCGGAACC aq_288 188349 - 187381 - | hypothetical protein TERM 125 188836 - 188819 - g 70 -5.6 -4.36914 | opp_overlap 188819 GCTTCTCTTATAAAA GGTGTA GAGGTT TACACC TTTGAAAACTTGAAA TERM 126 189440 - 189430 - g 74 -3.2 -5.04325 | CGGAAATTACAAAAA CCCT TTT AAGG TTTGCACGTGTTCGG aq_291 188378 - 189856 + | hypothetical protein aq_293 189867 - 190262 + | hypothetical protein TERM 127 190505 - 190495 - g 75 -4.6 -4.92239 | overlap 190497 TCAAAAAGTCAAAAA GGGA GAA CCCC TCGCACGCATACAGA TERM 128 190964 - 190952 - g 71 -4.8 -4.55287 | TTCATGGAGACAAAA CCAC TTTTT GTGG TGGGAAATACAGAAA aq_294 190268 - 191383 + | hypothetical protein aq_296 191380 - 192630 + | hypothetical protein TERM 129 193057 - 193043 - g 74 -10 -3.17714 | CGAAAGCCCTACGAA CTCTCC GGG GGAGAG CAACAGAGGGTAGCG abcT8 192623 - 193297 + | ABC transporter serS 194561 - 193284 - | seryl-tRNA synthetase TERM 130 193625 - 193649 + g 82 -9.3 -4.18161 | opp_overlap 193628, overlap 193628 TGTATGGAAGTCCGA GAAGCTGGAGA ACT TCTTCAGCGTC TTTTACAAGTTTCTC TERM 131 194210 - 194241 + g 86 -13 -3.12351 | CGTTGTCCTTTTCGT CCTCTCCCACTGGA ACAC TCGGGTGGGGGAGG TTAGGTATCCAGAGG TERM 132 194418 - 194428 + g 81 -3.2 -5.38549 | CCTCTCACTCCTTAA GGCT TCA AGTC TTTTTATTATTTCCC glmS 194591 - 196369 + | glucosamine-fructose-6-phosphate aminotransferase aq_302 196714 - 196370 - | hypothetical protein aq_303 197817 - 196711 - | hypothetical protein ileS 200674 - 197804 - | isoleucyl-tRNA synthetase TERM 133 200034 - 200044 + g 80 -6.8 -4.78107 | opp_overlap 200033 AACTTGACGTAAATG GAGG GGT CCTC TTTTTCGTAATACTC TERM 134 200307 - 200317 + g 100 -3.2 -6.17669 | CTGAACTCTGTCTTT GGGA GGC TCTC TTTTTTTATTTTCTT mutS1 200713 - 203292 + | DNA mismatch repair protein TERM 135 203515 - 203474 - T 100 -12.6 -4.2331 | gap 1 AAGGAAAATTAGAAA TCAGGAAACC-TAAAAGCC TTAGG GACTTCTATGGTTTCCTGA AAGGAAAGAAATCTA aq_311 204754 - 204008 - | hypothetical protein aq_313 205580 - 204741 - | hypothetical protein aq_314 206026 - 205589 - | hypothetical protein hksP2 207067 - 206135 - | histidine kinase sensor protein phoB 207352 - 208038 + | transcriptional regulator (PhoB-like) aq_321 208049 - 208645 + | hypothetical protein dnaA 209841 - 208642 - | chromosome replication initiator protein DnaA TERM 136 209068 - 209083 + g 73 -4.8 -4.70353 | overlap 209059 CTTTCTGAGTTCAAG GTTAAA CTCC TTTAAC TTTTCCTTTATTATC aq_323 210942 - 209932 - | hypothetical protein aq_324 211034 - 211816 + | hypothetical protein murI 212577 - 211813 - | glutamate racemase TERM 137 212088 - 212104 + g 75 -5.1 -4.7889 | overlap 212101 CCTTAAAGTCCTTCA GGTAATG CTC CACTACC TTTTTCGGTATTTCT TERM 138 213064 - 213050 - g 71 -5 -4.4874 | overlap 213051 TGGAAAAATTTAAAA CCTTTG GTG CAAAGA GGGTATTTTCCTGCG kdtA 212605 - 213666 + | 3-deoxy-D-manno-2-octulosonic acid transferase aq_327 214411 - 213641 - | hypothetical protein aq_328 214370 - 214885 + | hypothetical protein TERM 139 215406 - 215392 - g 80 -8.6 -4.24887 | AACATACTCAACAAA CTCCTT CAA AAGGAG TACAGGCTAATACTG aq_331 214915 - 215796 + | hypothetical protein dcuP 215954 - 216970 + | uroporphyrinogen decarboxylase TERM 140 217044 - 217056 + T 72 -9.1 -3.30203 | overlap 217036 TTCCGTAGCCCACCT GAGGG CTT CCCTC TTAACTTCTTCGTCC aq_336 217759 - 217169 - | hypothetical protein cysQ 218716 - 217910 - | CysQ protein TERM 141 218286 - 218299 + g 72 -3.1 -4.92239 | overlap 218281 218287 218293 TTTTCCCTACTCCAA TTTCC AATG GGAAG TTTTTCCATTTTTCC TERM 142 218293 - 218307 + g 75 -5 -4.81851 | overlap 218281 218287 218286 TACTCCAATTTCCAA TGGGAA GTT TTTCCA TTTTTCCCTTTACCT aq_338 219373 - 218720 - | hypothetical protein TERM 143 219172 - 219185 + g 81 -3.1 -5.46698 | CTAAATCTATCCCGA CTTTG AGGT CAGAG TTTTTTAGTTTTAAA TERM 144 219626 - 219615 - g 77 -2.2 -5.36441 | overlap 219625 TTTTTATACAAAAAA GGAT ATAA ACCC CTTGCAAGATTAAAA TERM 145 220040 - 220051 + G 78 -5.8 -5.00616 | opp_overlap 220039 TATAACTGAAAATCT GCCA ATAT TGGC TTTTTTAAAAACAAA aq_340 219402 - 221159 + | hypothetical protein TERM 146 221605 - 221590 - f 78 -4 -5.34381 | AAATTTAAAGAAAAA GGAAAA TGTA TTCTCC CTTATAGAAAGGCTT aq_341 222065 - 222556 + | hypothetical protein TERM 147 222759 - 222737 - g 71 -7.7 -3.82083 | opp_overlap 222731 222737 TGACGAGAAGTTAAA GGAGGAGCT TGGCG ACCTCCTCC TTCAGGTAGTTTTCC aq_342 222567 - 223340 + | hypothetical protein arsA2 224231 - 223332 - | anion transporting ATPase rfaD 225160 - 224228 - | ADP-L-glycero-D-manno-heptose-6-epimerase TERM 148 227043 - 227032 - g 77 -4.4 -5.04601 | overlap 227036 TCGATAAACTAAAAA TGGA GTTT TCCA TAAAAGTGTTTAACG aq_345 225588 - 227465 + | hypothetical protein pth 228040 - 227462 - | peptidyl-tRNA hydrolase TERM 149 227984 - 227970 - G 82 -7.8 -4.4891 | opp_overlap 227970 227969 TCTATTACCATAAAA CCGACA TTA TGCCGG GTTTTCTCGTACTCC ctc 228500 - 228045 - | general stress protein Ctc TERM 150 228498 - 228484 - G 70 -2.7 -4.89477 | GCCTCAATAAGAAAA GCCTC TCCGT GGGGC AAGAAGCAAAATCTT TERM 151 229379 - 229397 + G 70 -6.7 -4.11216 | opp_overlap 229360 GTTGCAAGTGCTCAC CTTCCCA CTCCC TGGGGAG TTTTCAAGATACACG ribA 228716 - 229936 + | GTP cyclohydrolase II leuS 231837 - 229933 - | leucyl-tRNA synthetase alpha subunit TERM 152 231289 - 231268 - G 71 -4.4 -4.62471 | opp_overlap 231272, overlap 231272 GGTAATCCTCAAAAA CCAGGAAG GAACTT CTTTCTGG ACTATGGGCGTTCCG aq_355 232578 - 231841 - | hypothetical protein leuA1 234178 - 232592 - | alpha-isopropylmalate/homocitrate synthase family transferase TERM 153 234243 - 234231 - H 70 -2.7 -5.055 | TTAAGGGTTAAAAAA CTTCT TAT AAAAG CCGATTATAATAATT flgM 234260 - 234526 + | anti sigma factor FlgM dinG 234590 - 236518 + | ATP-dependent helicase DinG TERM 154 237433 - 237445 + G 72 -3.3 -4.93296 | CTCTCTCAAGTTATT CCCAG ATT CTTGG TTTTTATCGTAATCC aq_359 236530 - 237600 + | hypothetical protein timA 238302 - 237559 - | triose phophate isomerase aq_362 239435 - 238638 - | hypothetical protein aq_363 239866 - 239435 - | hypothetical protein aq_364 240240 - 239863 - | hypothetical protein proS 241949 - 240237 - | prolyl-tRNA synthetase TERM 155 240634 - 240647 + g 82 -6.7 -5.00138 | opp_overlap 240633 CCTATGCCGTAACAG CCCAT AATT ATGGG TTTTTCCTTTCCGTC TERM 156 241056 - 241085 + g 72 -5.8 -4.53777 | gap 1 GTTTTCGTCTATTTC CCTGT-CTCCTCT GATTA AGACGAGTACAGG TTCTTTTTCGTTAAC TERM 157 241170 - 241190 + g 89 -8.3 -4.69027 | GAGTTCTTCTATGGT GTGCACGTT AGG AGTGTGCAC TTTTTCCATGGGTTT TERM 158 243465 - 243447 - g 73 -10.3 -3.06265 | overlap 243442 AGGTTATAAATGACA CCTACGG ACACG CCGTAGG GGATAGAGTTCTTAG aq_367 241994 - 244546 + | hypothetical protein TERM 159 245147 - 245157 + T 73 -5.4 -4.49939 | TACGTAAATTATTAC CGAA TCC TTCG TTTTGTGGATTATGT aq_369 246288 - 245338 - | hypothetical protein aq_370 246814 - 246281 - | hypothetical protein TERM 160 246562 - 246574 + g 71 -7.7 -3.82191 | overlap 246557 TGTGTTTTACTTCGT GGACT ACG AGTCC TTCTTCTCCGGTTAG aq_371 248981 - 246792 - | hypothetical protein aq_372 250527 - 248932 - | hypothetical protein aq_373 251177 - 250518 - | hypothetical protein TERM 161 250856 - 250866 + g 70 -5.4 -4.371 | AAGCTTTCTCAAACT CCTT TAA AAGG TTTTCATCTCCTAAG aq_374 252231 - 251158 - | hypothetical protein TERM 162 251454 - 251436 - G 74 -6.7 -4.30576 | overlap 251437 CCCCTATCACGAAAA CGGGAGA CAGAT TCTCCCA CCTTCCCTTTATCTG aq_376 253250 - 252309 - | hypothetical protein aq_377 253587 - 253252 - | hypothetical protein aq_378 254953 - 253592 - | hypothetical protein TERM 163 254710 - 254730 + g 77 -6.9 -4.57755 | opp_overlap 254715 TTTCCTCGTAATTCT CAAAAGGTA AGT TACCTTGTG TTTTGTCTGATAAGT aq_380 256071 - 254950 - | hypothetical protein TERM 164 255948 - 255961 + g 100 -3.9 -6.17268 | opp_overlap 255948 CTACTTTTTTTAAAG CTTTA TGGA TAAAG TTTTTTTTATTATCG aq_381 256986 - 256087 - | hypothetical protein aq_382 257906 - 257019 - | hypothetical protein TERM 165 257386 - 257401 + gr 93 -2.6 -5.85244 | TATTCGCCTTTTCCC TTGAGA ACTT TTTCAA TTTTTTCTTTTAATT aq_383 258615 - 257872 - | hypothetical protein aq_384 259258 - 258857 - | hypothetical protein aq_385 260135 - 259248 - | hypothetical protein aq_386 261109 - 260132 - | hypothetical protein aq_387 262955 - 261090 - | hypothetical protein TERM 166 261671 - 261685 + g 73 -2.8 -5.05301 | overlap 261676 261679 TGAGTTCTTTTTTTA GGATTT CAG AAAACC TTTTTCTAATTATTT TERM 167 262147 - 262157 + g 74 -4 -4.94222 | TCCTTTTCTTCCTCT GATA GCT TATC TTTTTCTACCTTCTT TERM 168 262495 - 262505 + g 73 -2.6 -5.07107 | TAAGGATTTTCTTGG TTTA TTT TAAA TTTTTTCAGCGTTTC TERM 169 263535 - 263550 + H 91 -10.4 -4.61633 | GCCAAGGAGCCAGGA GGGGCT TTTT AGCCCC TTTTTAAAAGTATAT aq_388 263585 - 264490 + | hypothetical protein TERM 170 265335 - 265325 - g 74 -6.8 -4.41616 | ACTCCGTTAAACAAA CACC CGT GGTG GGACAGCTCGCTGGA aq_389 265099 - 265647 + | hypothetical protein aq_390 265667 - 266092 + | hypothetical protein TERM 171 266128 - 266151 + F 85 -2.6 -5.72207 | opp_overlap 266128 266130, overlap 266130 CCCCCTTTATAAGAA TATTTTTATA TGAC TATAAAAAAA TTTTTTTGATTTCCC aq_391 266219 - 266971 + | hypothetical protein aq_392 267030 - 267698 + | hypothetical protein aq_394 267846 - 268373 + | hypothetical protein TERM 172 268386 - 268401 + F 89 -11.8 -3.54012 | opp_overlap 268385 268381 268379 268377 TAAACACACATACAT GGGGGC TCTT GCCCCC TTCTATAAATCCTTT hdrA 268431 - 269489 + | heterodisulfide reductase subunit A TERM 173 269507 - 269524 + G 74 -10.5 -3.13073 | opp_overlap 269506 269505, overlap 269506 269503 GAAAGGCAAAACACG GGCGGCT TCAA GGCCGCC TCTCTTGATGAAGCT aq_397 269486 - 270304 + | hypothetical protein hdrC 270319 - 271080 + | heterodisulfide reductase subunit C TERM 174 271133 - 271120 - g 86 -9.5 -4.4009 | GTTCAGTTTAGAAAA CCGCC TATG GGCGG TATAGGAAAGAAAGT TERM 175 271579 - 271566 - g 74 -2.3 -5.27769 | overlap 271568 AGAAAAAACCAAAAA GCCCT TAAG AGGTC TCAAAGTAGCAAGCT hdrB 271093 - 272088 + | heterodisulfide reductase subunit B TERM 176 272097 - 272114 + F 100 -14.1 -3.57144 | TGCTTAATGTCTTTT GCCCGCC TTTT GGCGGGC TTTAAAAATAAAAAA TERM 177 272221 - 272236 + G 81 -6.1 -4.96848 | GGCCGAAAACTCCTT GGCGT TGTGCT ACGCC TTTTTATATAGCCAC aq_401 272163 - 272570 + | hypothetical protein aq_402 272598 - 273044 + | glycine cleavage system protein H aq_403 273087 - 274112 + | hypothetical protein TERM 178 274819 - 274806 - g 82 -8.1 -4.53648 | CATAGAAAACATAAA GGTGG TTAT CCACC CGCAGAGCTTTGTCC aq_404 274129 - 275271 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase aq_406 276100 - 275231 - | hypothetical protein TERM 179 275917 - 275901 - G 88 -3.7 -5.5074 | opp_overlap 275894, overlap 275894 275914 GAATTTAAGAAAAAA CTTTCTT TTA AAGGAAG GGAAAGGAGGAGACT aq_407 276708 - 276097 - | hypothetical protein TERM 180 276226 - 276206 - G 72 -9.7 -3.15999 | GCGGTATACATGGAA CTGACTCCT GCG AGGAGTCCG GCTACGAAAAGCCCT aq_408 277248 - 276724 - | hypothetical protein pyrB 278114 - 277239 - | aspartate carbamoyltransferase catalytic chain TERM 181 277662 - 277685 + g 71 -9 -3.30441 | opp_overlap 277668, overlap 277668 TTTGATATCACCCAC GTAAAGGACT CTTA AGTCTTTTAC TTCTCCGAAGTGCTC carA 279226 - 278111 - | carbamoyl phosphate synthase small subunit TERM 182 278442 - 278452 + g 79 -6.8 -4.70515 | CAACCCAAGCATATC CCCA TTA TGGG TTTCTTTTCCATGTA TERM 183 278653 - 278665 + g 74 -3.3 -5.15526 | CACCAAAGTCTATTA CCGCT ACG AGAGG TTTTTCATTTTCTCT TERM 184 282224 - 282201 - g 73 -5.3 -4.59773 | overlap 282216 282217 CTCTACCTCGAAAAA CTCAGGAAG GTAAAA CTTCCCAAG GAAAAGATTGAGGAA pcnB1 279846 - 282320 + | poly A polymerase abcT7 282323 - 283039 + | ABC transporter aq_414 283036 - 284355 + | hypothetical protein napA1 284327 - 285490 + | Na(+)/H(+) antiporter aq_416 285507 - 286553 + | hypothetical protein abcT6 286550 - 287209 + | ABC transporter gspG 287857 - 287456 - | general secretion pathway protein G TERM 185 287540 - 287576 + g 74 -9.5 -3.37685 | gap 1, overlap 287538 ATAGGGTTTATTACC CGCG-GGGGAGACG TAAATAAAGT CGTTTCCCCACGCG TCTTTCGGAACTTTT TERM 186 287647 - 287659 + g 70 -9.1 -3.19463 | TAGGCTTTTCCACGA GGGCT TTC AGCCC TTGCTCCGTGGTGGG aq_419 288189 - 287857 - | hypothetical protein aq_420 288536 - 288189 - | hypothetical protein TERM 187 288543 - 288562 + H 72 -4.4 -4.82901 | opp_overlap 288543 288544 288546, overlap 288544 TCTTTTCATAAGTAA TTATTCTA TATC TAGAATAG TTTTTATGGACAGGC aspC3 288568 - 289689 + | aminotransferase TERM 188 289977 - 289993 + G 93 -12.3 -3.50853 | opp_overlap 289963 ACTCGCCGCATCGGA CGGAGAG AAC CTCTCCG TTATAGTTCCCGACA metG' 289705 - 290040 + | methionyl-tRNA synthetase beta subunit aq_423 290037 - 290654 + | hypothetical protein thrC2 291701 - 290643 - | threonine synthase aq_427 292093 - 291728 - | hypothetical protein aq_428 292557 - 292111 - | D-tyrosyl-tRNA deacylase TERM 189 293137 - 293147 + G 74 -5.4 -4.62069 | TTACAACAGGAAGTT TCTC GAG GAGA TTTTTAAGCTCGAGA aq_429 292832 - 293572 + | hypothetical protein aq_430 294100 - 293549 - | hypothetical protein grpE 294796 - 294248 - | heat shock protein GrpE TERM 190 294368 - 294381 + g 70 -6.7 -4.06179 | TACGACGGTATTGGG CGGAT ACTG ATCCG TTTCTACCTTTTCCA TERM 191 294707 - 294720 + g 88 -3.9 -5.4756 | GTTCTTGGCGATTGT TTCAA GTTT TTGAA TTTTTTCTTCGAGTT glpK 296294 - 294816 - | glycerol kinase TERM 192 296018 - 296029 + g 70 -7.2 -3.9941 | opp_overlap 296018, overlap 296013 GTATTGCGTTGTAAA CCGG TCTT CCGG TTTCCTTATCCCAAA ribD2 296965 - 296291 - | riboflavin specific deaminase TERM 193 297020 - 297036 + H 76 -10.9 -2.65815 | TCGAACCGGCGACCT CCTGCTT GGG AAGCAGG TGCTCTACCTCTGAG TERM 194 297176 - 297166 - g 83 -5.4 -5.18355 | CGGAAAAAGGAAAAA CTGT CTT ACAG GTAGCCCTCGAAAAC TERM 195 297907 - 297917 + G 71 -2.4 -5.13473 | overlap 297909 ACGAGCTAAATATCT GCGC CAA GGGC TTTTTTGGCTATGAT TERM 196 297989 - 297976 - g 71 -4.5 -4.64657 | overlap 297977 CTAAAGTGGGAAAAA GGGAA GAAA CTCCC GGTAACGTCGTAAAC nuoG 297105 - 299003 + | NADH dehydrogenase I chain G aq_438 300078 - 299119 - | hypothetical protein TERM 197 299325 - 299337 + g 74 -3.4 -5.04597 | TCTTCTTTTCCCTGA GTTC GGAAG GAAC TTTTTGTATGTCGCT aq_439 300829 - 300317 - | hypothetical protein aq_440 300870 - 301664 + | hypothetical protein aq_442 302320 - 301661 - | hypothetical protein gua 302447 - 303136 + | glutaredoxin-like protein accD 303136 - 303966 + | acetyl-CoA carboxyltransferase beta subunit TERM 198 304314 - 304288 - g 76 -10 -3.38564 | TAAAGGGACTCACAA CCGCAGCGAGCC TCT GGAGCACTGCGG GTATAGGAATAGCCG mgtC 303963 - 304640 + | Mg(2+) transport ATPase aq_448 304651 - 304941 + | hypothetical protein aq_449 304932 - 305306 + | hypothetical protein aq_450 305303 - 305620 + | hypothetical protein ilvB 307374 - 305617 - | acetolactate synthase large subunit aq_453 308481 - 307708 - | hypothetical protein aq_454 309581 - 308469 - | hypothetical protein TERM 199 309455 - 309476 + g 74 -7.3 -4.28589 | GAGTTCTTTTAATTC CTTCTTCCT CCTC GGGAAGGAG TTTTAAGTACTTTTT sor 310614 - 309613 - | sulfur oxygenase reductase TERM 200 310682 - 310709 + H 81 -7.2 -4.63218 | overlap 310683 TTAGGAGGCAGGATT GGTTAACATAAT TGCC ATTATGTTAACA TTTTATTACCGGAGG TERM 201 310683 - 310708 + H 80 -10.7 -3.3761 | overlap 310682 TAGGAGGCAGGATTG GTTAACATAAT TGCC ATTATGTTAAC ATTTTATTACCGGAG bcp 310732 - 311235 + | bacterioferritin comigratory protein aq_459 311258 - 311782 + | hypothetical protein aq_460 311779 - 312390 + | hypothetical protein gatB 312402 - 313838 + | aspartyl/glutamyl-tRNA amidotransferase subunit B aq_465 313851 - 314192 + | hypothetical protein aq_467 314640 - 315419 + | hypothetical protein TERM 202 315676 - 315665 - g 70 -5.8 -4.31835 | AAGCTCTACAAGAAA GAGG GGGA CCTC GTGAAAAAGGGAGAA TERM 203 315823 - 315800 - g 80 -4.6 -5.29782 | GAGAGGTATAAAAAA CTTTACGAAC AAAA GGTCATAAAG TACACGCTCTTTTAC czcB3 315416 - 316495 + | cation efflux system (czcB-like) acrD3 316510 - 319569 + | AcrB/AcrD/AcrF family cation efflux protein aq_473 319586 - 320233 + | hypothetical protein aq_474 321457 - 320225 - | hypothetical protein TERM 204 320732 - 320746 + g 76 -8.6 -3.96188 | opp_overlap 320731 TTCTTCCGAAACTAT GAGCTT TAA AAGCTC TTTATCCATCTCCTT TERM 205 321036 - 321026 - G 71 -4.6 -4.62471 | overlap 321006 CTGAACCTTTAAAAA GGGC CTT ACCC CTTCAAAGTAAAGAA panD 322201 - 322575 + | aspartate alpha-decarboxylase aq_477 322577 - 322909 + | hypothetical protein aq_478 324134 - 322899 - | hypothetical protein TERM 206 324083 - 324072 - GT 71 -2.2 -5.06414 | CCTTCTCAAGAAAAA CTCG TAGG CGAA TACCTCTCCGTTTCT glyA 325386 - 324100 - | serine hydroxymethyl transferase oppB 326378 - 325395 - | transporter eno 326762 - 328042 + | enolase TERM 207 328359 - 328313 - T 91 -10.3 -4.62475 | gap 2 ACTCATAAAGGAAAA GGAAGAGGGAGAGGGGATTACTC GTT GAG-AA-CCTCTCCCACTCTTCC AACGAGTTCTTCTGA ahpC1 328965 - 328330 - | alkyl hydroperoxide reductase tpx 329528 - 329019 - | thiol peroxidase fnr 330319 - 329597 - | Crp family transcriptional regulator TERM 208 330081 - 330093 + g 87 -7.7 -4.88795 | CTTACTATTATGCTC CTTCC GTC GGAAG TTTCTTTTATTAACT aq_492 331355 - 330417 - | hypothetical protein aq_493 332350 - 331382 - | hypothetical protein TERM 209 331651 - 331661 + gr 84 -6.8 -4.86731 | AGTAATCCGCTCCTA CACC TCC GGTG TTTTCTTTAAGCCCA aq_494 333059 - 332298 - | hypothetical protein TERM 210 332549 - 332563 + gH 85 -7.1 -4.8384 | opp_overlap 332548 TCGCTATTAATTTAT CCGTG TCGCT CACGG TTTTTACGTTCTTTA aq_495 332980 - 333465 + | hypothetical protein mutY3 333390 - 334088 + | endonuclease III gsdA 335367 - 334072 - | glucose-6-phosphate 1-dehydrogenase gnd 336232 - 335330 - | 6-phosphogluconate dehydrogenase-like protein TERM 211 335598 - 335583 - GR 76 -2.6 -5.31059 | gap 1 AGATCAATCAAAAAA GAA-CGT ATT ACGCTTC CCTGCGAGTAAACTC aq_499 337032 - 336232 - | hypothetical protein trxB 338085 - 337114 - | thioredoxin reductase TERM 212 337259 - 337245 - G 82 -7.8 -4.56597 | CTCCCGCCGCAAAAA CTCCCG GAA CGGAAG TCATCATCTCCTCGT TERM 213 337659 - 337639 - G 70 -7.5 -3.90744 | CTGGTCTTTAAAGAA TGCGGCGTC ACA AACTCCGCA GTAAGAAACTCCCCT pmu 339727 - 338228 - | phosphoglucomutase/phosphomannomutase TERM 214 339249 - 339267 + gr 81 -7.4 -4.57787 | opp_overlap 339242 TTTACAAATTCCGGA GTTGCGGA ACC TCCGAAAC TTTCTTTAATCTTGT aq_503 340080 - 339619 - | hypothetical protein TERM 215 340062 - 340036 - GR 74 -5.9 -4.62471 | opp_overlap 340038, overlap 340038 TCTAATCCCTAAAAA CACGTCTGG CTTCCTTTT CCAGACGTA ATCTCCCCCTATCCC otnA' 340583 - 340164 - | polysaccharide biosynthesis protein (fragment) otnA 342791 - 340614 - | polysaccharide biosynthesis protein TERM 216 341075 - 341091 + gr 79 -5.1 -5.00846 | overlap 341070 TCCTTAAATCGTTGA GGTAGAA AAC TTCAACC TTTTTATCCTGTTTC TERM 217 341276 - 341258 - GR 71 -7.4 -3.79687 | opp_overlap 341256 341251, overlap 341256 341261 ACTCCGGATAAAACA CTATCCTG TCC CAGGATTG GAGTTTGATATCTTT TERM 218 342633 - 342645 + gr 73 -2.7 -5.04325 | AAACTCCTTTTCTAT TTTGG ATA TCAAA TTTTTATACTTTGGA aq_506 344034 - 342733 - | hypothetical protein aq_507 343742 - 344278 + | hypothetical protein TERM 219 345604 - 345621 + G 83 -2.7 -5.59502 | ACAGTTTACTTTGTA GGGGAAT TTTT ATTTTCC TTTTTTAGTTTTTTA TERM 220 345745 - 345758 + G 89 -2.5 -5.64274 | opp_overlap 345745 TATGTAGGAAGAGAA TTTAT TCAT ATAAA TTTTTTTCTAAATCA aq_509 345070 - 346395 + | hypothetical protein aq_510 346396 - 346866 + | hypothetical protein aq_512 348366 - 347383 - | hypothetical protein murB2 346905 - 347546 + | UDP-N-acetoenolpyruvoylglucosamine reductase TERM 221 348701 - 348675 - fH 75 -5.9 -4.74706 | opp_overlap 348677, overlap 348677 TCTAACACCTAAAAA CACGTCTGG CTTCCTTTT CCAGACGTA ATCTCCCCCTATCCC TERM 222 350272 - 350288 + G 71 -5.1 -4.54727 | AAATTTTTCATTTCT CCTTCTT TAT ATGAAGG TTTTGGTTTACCACC TERM 223 350507 - 350489 - g 75 -4.7 -4.98672 | CTGAAAAAGATAAAA TTTTCAA TAAAT TTGAAAA AAGAAAAATAGTAAA mtfB 349447 - 350571 + | mannosyltransferase B mtfC 350568 - 351674 + | mannosyltransferase C spsK 351738 - 352151 + | spore coat polysaccharide biosynthesis protein SpsK rfe 352120 - 353193 + | undecaprenyl-phosphate-alpha-N-acetylglucosaminyltransferase TERM 224 353419 - 353403 - gf 74 -2.3 -5.22039 | overlap 353394 353404 353412 TGTAAATTTAAAAAA CTTAAAA GGT TTTAAAG TAAAAGAAATTAAAG TERM 225 353687 - 353707 + GF 71 -6.9 -4.13304 | overlap 353690 CTTACAGAAAATCGC CTTTTCCAA AAC TTGGAATAG TTTTCAAAGTAGTTT murB1 353194 - 354087 + | UDP-N-acetylenolpyruvoylglucosamine reductase ddlA 354044 - 354919 + | D-alanine:D-alanine ligase aq_522 354930 - 355580 + | hypothetical protein ftsA 355580 - 356830 + | cell division protein FtsA ftsZ 356843 - 357946 + | cell division protein FtsZ moaC 357943 - 358707 + | molybdenum cofactor biosynthesis moaC TERM 226 358752 - 358772 + G 71 -8.3 -3.46102 | opp_overlap 358752, overlap 358747 ATATACGGGATAAAA CTCCTGCAA GTA TTGGAGGAG TTAGATTTTTCAGTA TERM 227 358772 - 358752 - g 84 -8.3 -4.4195 | opp_overlap 358747 358752 ATATACGGGATAAAA CTCCTGCAA GTA TTGGAGGAG TTAGATTTTTCAGTA TERM 228 359126 - 359156 + G 73 -6 -4.36914 | AAAAATTACGAGGAT GGGGGGAGTTGTAG TTC CCGCAAGTCCCGCC TTTTATCACAAACCA dedF 358695 - 359264 + | phenylacrylic acid decarboxylase oprC 361632 - 359590 - | outer membrane protein c TERM 229 362247 - 362218 - g 74 -2.3 -5.24129 | opp_overlap 362224, overlap 362221 362235 TTTTCGTATAAAAAA GAATTTTTGAAAA TCAA TTTTGAAAAAATC AGAAATTACGTTCAG aq_531 361705 - 362493 + | hypothetical protein aq_532 363126 - 362461 - | hypothetical protein aq_533 364284 - 363142 - | hypothetical protein TERM 230 363341 - 363331 - G 70 -6.8 -4.10566 | opp_overlap 363331 363330 ACAGGAGCATATAAA GAGG CTT CCTC CCTTTTTTAGTTTCT TERM 231 363887 - 363897 + g 72 -5.4 -4.45771 | opp_overlap 363887, overlap 363883 AATTCCTCCACGAGA GTCT TTA AGAC TTTCTCTTTTAAAAT draG 364314 - 365306 + | ADP-ribosylglycohydrolase lpxD 365636 - 366295 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N acyltransferase aq_539 366297 - 367154 + | hypothetical protein aq_540 367787 - 367143 - | hypothetical protein TERM 232 369026 - 369012 - g 82 -10 -3.90112 | GTTTCTGGAATTAAA GCCAGA CGT TCTGGC GATAACGGGGGACCA bcpC 368017 - 369240 + | cofactor-independent phosphoglycerate mutase hpt 369242 - 369778 + | hypoxanthine-guanine phosphoribosyltransferase aq_545 370959 - 369760 - | hypothetical protein dapE 371023 - 371922 + | succinyl-diaminopimelate desuccinylase TERM 233 371930 - 371912 - T 81 -7.4 -4.52781 | GAAGGAGAAGCAAAA GGAAGGGA TAA TGCCTTCC TGGACTCATGCGAGC TERM 234 371974 - 371994 + T 75 -9.7 -3.30124 | CGGGATACACTGCCT GGCTTTTGG TTA CCGGAAGCC TTATAGACAGTCACA aq_548 372647 - 372081 - | hypothetical protein trpG 373339 - 372746 - | anthranilate synthase component II TERM 235 372841 - 372860 + g 75 -9.2 -3.5812 | opp_overlap 372844, overlap 372839 372844 ACTCGGGGTGGAACT GAACCCCG TAAA CGGGGTAC TCTTTGTGCTCAATA TERM 236 372844 - 372857 + g 70 -9.5 -2.91255 | opp_overlap 372844, overlap 372841 372839 CGGGGTGGAACTGAA CCCCG TAAA CGGGG TACTCTTTGTGCTCA TERM 237 372857 - 372844 - G 72 -9.5 -3.17075 | opp_overlap 372844 372841 372839 CGGGGTGGAACTGAA CCCCG TAAA CGGGG TACTCTTTGTGCTCA nuoD1 375117 - 373336 - | NADH dehydrogenase I chain D sms 376495 - 375161 - | DNA repair protein RadA TERM 238 376061 - 376099 + g 70 -10.4 -2.61831 | overlap 376049 376048 376060 376059 TTTCTCAAGGTTTAC CTCGGGGTAAACGAGGAG GTT TTCGTTGTTTATTCCGAG CCTTTTTGCCCTGAG frdB1 377196 - 376504 - | fumarate reductase iron-sulfur subunit TERM 239 376614 - 376626 + g 70 -5.5 -4.35042 | overlap 376611 GACAGTGGTAAAGGT GTCCT TCA AGGGC TTCTTTTATCCTGAA aq_554 377948 - 377232 - | hypothetical protein aq_555 377884 - 378687 + | hypothetical protein TERM 240 378780 - 378794 + G 73 -5 -4.60797 | TTTTAGCGGTATTAC TCCTTT TAG GAAGGA TTTTATATATAAACC TERM 241 379784 - 379772 - g 72 -3.4 -5.0133 | overlap 379782 TACTTGTGGAAAAAA GAGT ACATA ACTC CTAGGGAACTCTTAG pbpA2 378689 - 380425 + | penicillin binding protein 2 bioD 381060 - 380398 - | dethiobiotin synthetase thiE2 381704 - 381057 - | thiamine phosphate synthase recN 383304 - 381742 - | recombination protein RecN TERM 242 382447 - 382473 + g 77 -5.3 -4.95957 | gap 1 TGATTTTTTGTACTT CTCTTCA-AGTC TCTG GATTCTGAAGAG TTTTTCGTTAATTTC TERM 243 383466 - 383478 + H 74 -6.3 -4.45068 | opp_overlap 383466 TAAAGTATTAAATTA TTGTG AGA CACAA TTTATTGTTAAAACT TERM 244 383937 - 383917 - g 72 -7.5 -4.13995 | opp_overlap 383917 GTGCCACAAAGTAAA GCCCGGAGA GGT TCTCGGAGC TGTCTCCATTACGAT aq_563 383468 - 385324 + | hypothetical protein TERM 245 385397 - 385374 - g 71 -2.4 -5.03145 | overlap 385376 385380 385391 GAACTTCTTAAAAAA CTCAAAGATT TAAA AATCCTCGTG GTGGGAGACGTAATC TERM 246 385619 - 385630 + G 74 -2.2 -5.26875 | ATTAATAGAGGGAAA TTCC ATAA GGAG TTTTTTAATTGAGGA rfaE 385335 - 386282 + | ADP-heptose synthase birA 386285 - 386986 + | biotin [acetyl-CoA-carboxylase] ligase rimI 387418 - 386954 - | ribosomal-protein-alanine acetyltransferase TERM 247 387519 - 387508 - g 74 -5.8 -4.66163 | overlap 387509 387510 AGGTTCAGGTAAAAA CTCC CTTC GGAG AGCCTTCCTCTCCCG TERM 248 387606 - 387589 - g 70 -9.1 -3.16475 | TAGCGAGACACGGAA GGGGGCA TGAA TACCCCC CTCACCTAGTCCCTT TERM 249 387938 - 387920 - g 75 -4.6 -4.98255 | opp_overlap 387930 CCTGAAGGAGAAAAA TTTCAGAT TTC ACCCGAAA GGTGTTTACGCCTGC deoD 387432 - 388265 + | purine nucleoside phosphorylase aq_572 389645 - 388545 - | hypothetical protein TERM 250 388682 - 388694 + g 74 -4.1 -5.0133 | overlap 388671 CGGGGTTTTGATAAA GCTTT AAG AAGGC TTTTTTAACGCACTC nuoF 390935 - 389655 - | NADH dehydrogenase I chain F nuoE 391392 - 390910 - | NADH dehydrogenase I chain E TERM 251 391010 - 390987 - GR 75 -8.9 -3.57406 | overlap 390985 390988 CGTTTACCATAAACA CGGGAGCTT CCGAGC AAGCTCCCA GACACTGAACGGGAA TERM 252 391009 - 390988 - GR 72 -10.2 -2.74122 | overlap 390987 390985 GTTTACCATAAACAC GGGAGCTT CCGAGC AAGCTCCC AGACACTGAACGGGA aq_575 392047 - 391412 - | hypothetical protein stpK 392859 - 392044 - | Ser/thr protein kinase TERM 253 392528 - 392542 + g 86 -7.8 -4.84359 | TTCAGGGCTTCCTCA GGGGAG AGC TTCCCC TTTTTCTCCACGTAA aq_577 392890 - 393504 + | hypothetical protein aq_578 394074 - 393496 - | hypothetical protein TERM 254 393687 - 393700 + g 76 -3.7 -5.09685 | ATACTTCTCCTTTAT CGCCC ACGA GGACG TTTTTGTATATGTTG TERM 255 394181 - 394167 - g 80 -8.6 -4.21811 | GACGTAATAGATAAA GAGGTT AAG AACCTC ATAAGGGATATGTTC def 394092 - 394601 + | polypeptide deformylase TERM 256 394769 - 394753 - g 71 -4.4 -4.62471 | opp_overlap 394753 394745 CGTAAGTCCTAAAAA GAGGAA GAACT TTCCCC TATTTAAGTGTTTTT aq_581 394598 - 395125 + | hypothetical protein trpE 396610 - 395126 - | anthranilate synthase component I aq_585 397306 - 399423 + | hypothetical protein neaC 400712 - 399420 - | N-ethylammeline chlorohydrolase TERM 257 400576 - 400551 - G 75 -8.3 -3.81951 | opp_overlap 400550 GTGCATATTAGCAAA GGAAGGAAAAG CTAT CTTGCCCTTCC CGTTTATCGTGTACT xanB 400746 - 402107 + | mannose-6-phosphate isomerase/mannose-1-phosphate guanyl transferase aq_591 402088 - 403089 + | hypothetical protein TERM 258 404086 - 404074 - g 72 -7.7 -3.86194 | AATGCTGGCTACAAA CCTCT GGA AGAGG TGAAGGAAGAAATAA aq_592 403186 - 404499 + | hypothetical protein frdA 406211 - 404496 - | fumarate reductase flavoprotein subunit TERM 259 405247 - 405258 + g 75 -4.4 -4.89519 | AGCTGTCTTACCTGA GGAA GCCT TTCC TTTATTTTCTCTTCT purB 407820 - 406507 - | adenylosuccinate lyase aq_598 408254 - 407862 - | hypothetical protein TERM 260 408859 - 408849 - g 81 -2.4 -5.49809 | opp_overlap 408849 GAAATTTTAAAAAAA GCCC TTC GGGA TTTAAAAAGAGGAAA rpoN 408354 - 409550 + | RNA polymerase sigma factor RpoN aq_600 410049 - 409567 - | hypothetical protein aq_601 410406 - 410942 + | hypothetical protein aq_603 411154 - 411972 + | hypothetical protein TERM 261 412708 - 412684 - g 70 -2.8 -4.96848 | CTTCCGAGACAAAAA GCCCCTGAGA TAGTT TTTCAGGAAC TTGGACAGTACGAGG lpxA 412006 - 412791 + | UDP-N-acetylglucosamine acyltransferase glmU 412805 - 414199 + | UDP-N-acetylglucosamine pyrophosphorylase thrC1 415425 - 414196 - | threonine synthase TERM 262 414333 - 414346 + g 77 -6.7 -4.48877 | CTACGGTCTCTTCGG GGGAA ATCA TTCCC TTTTCTACGTATTTC aq_609 416548 - 415436 - | translation-associated GTPase TERM 263 417101 - 417073 - R 91 -14 -2.91199 | opp_overlap 417070 417076, overlap 417061 417076 CAATTGCCAAGGAGA CAAGTGGGCTCT CTTAC AGAGCCCACTTA ATATTATATACCATT TERM 264 417098 - 417076 - R 95 -13.5 -3.59946 | opp_overlap 417070 417076, overlap 417073 TTGCCAAGGAGACAA GTGGGCTCT CTTAC AGAGCCCAC TTAATATTATATACC TERM 265 417076 - 417098 + r 95 -13.5 -3.44443 | opp_overlap 417076 417073, overlap 417070 TTGCCAAGGAGACAA GTGGGCTCT CTTAC AGAGCCCAC TTAATATTATATACC deaD 418105 - 417224 - | ATP-dependent RNA helicase DeaD aq_615 418639 - 419037 + | hypothetical protein TERM 266 419422 - 419404 - g 86 -11 -4.15106 | overlap 419382 GAGGAACTCTTAAAA GCGGAAGA AGC TCTCCCGC CACTTGACGAAGAAC aq_616 419071 - 419574 + | hypothetical protein TERM 267 420004 - 419989 - g 71 -10.4 -2.71731 | overlap 419991 CGCAGGTGCGAATTA CACGGG GAAA CCCGTG GAAGTTGACGGCAAC pfpI 419585 - 420088 + | protease I TERM 268 420761 - 420738 - g 79 -2.5 -5.38958 | ACTCATAAAGAAAAA GGAAATAAA GGTAGT TTTAATTCC TAAAGGTGTGCACTC yfeA 420088 - 420924 + | adhesion B precursor TERM 269 420968 - 420981 + G 74 -3.8 -4.89063 | opp_overlap 420968 CGACGGTAAACACAA CGTC CTTGAA GACG TTTCTTTTTACGTAG TERM 270 421168 - 421180 + G 80 -9.1 -4.08394 | TTCCCCAGAGACTTA GCGTG GAA CACGC TTTTCCCGGAACTGT abcT2 420915 - 421613 + | ABC transporter aq_621 421671 - 422402 + | hypothetical protein aq_622 423338 - 422376 - | hypothetical protein TERM 271 423799 - 423789 - g 74 -6.8 -4.43283 | overlap 423792 GGAGAGAAAGATAAA GGAG GCA CTCC TTGCCATAAAGATTG mrcA 423373 - 425553 + | penicillin binding protein 1A bioF 425550 - 426671 + | 8-amino-7-oxononanoate synthase TERM 272 426678 - 426664 - T 80 -10 -3.68023 | opp_overlap 426663 426662 AAGTTTTAAAAGGAA GGGCTT AGA AAGCCC AGTTTAGCCCTACAC aq_627 427594 - 426668 - | hypothetical protein aq_628 428011 - 427634 - | hypothetical protein xcpC 431936 - 428466 - | chromosome assembly protein TERM 273 428922 - 428936 + g 76 -4.2 -5.0432 | opp_overlap 428922, overlap 428924 ATTTATCTGGTTAAA GGCTTC TAA GAAGAC TTTTCTCTTTTTGTT TERM 274 429229 - 429241 + g 77 -4.9 -4.93333 | ACCTTAAGGTTTTTC TCTTT TTC AAAGA TTTTCTCTTTTAATT TERM 275 429363 - 429379 + g 89 -3 -5.63517 | CTTTACCTCTGCTTC CTTTAC TTCCT GTAAGG TTTTTTCTTTAAAAA TERM 276 431219 - 431229 + g 74 -3.2 -5.08255 | TTTCCCTTTCTTTCA GGAG TTT TTCC TTTTCTTTTAGAAGT TERM 277 431741 - 431729 - G 77 -4.9 -5.00616 | opp_overlap 431729 CGTTTTTGGAAAAAA TTAAG TAA CTTAA GTTCTTTGCCCTGAG aq_632 433143 - 432190 - | hypothetical protein TERM 278 434519 - 434507 - g 74 -7.7 -4.09685 | TCTGAGCTCGTAAAA CTTCC CGA GGAAG TAGCTATAAGGTGTA TERM 279 434551 - 434561 + G 70 -6.8 -4.14392 | AAACATATCCTGCCC CGCT CAG AGCG TTTTGAGGATTAAAC TERM 280 435004 - 434986 - g 74 -6.7 -4.33739 | gap 1 TAAAAAACTGGAAAA GGCG-GGT GTAA ACCTCGCC AAGAAAGTCAAAGAA ligA 433166 - 435328 + | DNA ligase (NAD dependent) aq_635 435748 - 435320 - | hypothetical protein lysR1 437487 - 436576 - | LysR family transcriptional regulator TERM 281 437947 - 437961 + H 77 -8.6 -3.88498 | CGCTCATTCTTTCAC CTCCTT AAT AAGGAG TTTAATATATAAGAA TERM 282 438273 - 438284 + G 73 -3 -5.13741 | TTCAGGTTTACTACT CAAA TGGC TTTG TTTTTCTTAACTTAA thy 438038 - 438991 + | thymidylate synthase complementing protein aq_642 440085 - 439003 - | RNA 3'-terminal-phosphate cyclase aq_644 440774 - 440091 - | hypothetical protein TERM 283 440229 - 440262 + g 79 -9.7 -3.84389 | gap 1 GACTATGTACCTCAG GGT-GTAGGCCCTGTG AGG CATAGGGTTTACCACC TTCTTACCTTTTCTT TERM 284 440451 - 440467 + g 78 -10.9 -3.1364 | opp_overlap 440449, overlap 440453 CTTGTCCTGAAAGGT TACCGAG TAC CTCGGTA TTGGGTCATTGACTC TERM 285 440669 - 440679 + g 72 -6.8 -4.2651 | overlap 440666 440666 TATAGGGATTCAGTT CAGG GAA CCTG TTCTTTTCCCTGTTT TERM 286 440724 - 440742 + g 75 -5.2 -4.82901 | opp_overlap 440712, overlap 440727 GTAGTCCTCCTTTAC GAGGTCCA TCG TGGACTGC TTTTTCTCCGAAGGA TERM 287 441481 - 441513 + G 70 -7.2 -3.9461 | gap 1, opp_overlap 441485 441510, overlap 441485 TTATTAAAGGAACTT GAAATCCTTTTGTCT GAAG AG-CTAAAGGATTTC TTCTTCTTAGAAGAA aq_645 440821 - 442143 + | hypothetical protein TERM 288 442664 - 442632 - g 80 -4.3 -5.28166 | overlap 442633 442640 GAAAATCAAGAAAAA CTTTTAAATTTCCTT TCA AAGGAAATCTCAAAT ATGCAGGAAGCTACA TERM 289 442663 - 442633 - g 71 -7.8 -3.74459 | overlap 442632 442640 AAAATCAAGAAAAAC TTTTAAATTTCCTT TCA AAGGAAATCTCAAA TATGCAGGAAGCTAC aq_647 442506 - 443915 + | hypothetical protein TERM 290 445136 - 445120 - g 76 -6.5 -4.56969 | opp_overlap 445131, overlap 445131 AACCTCATAAAGAAA GCGGG TAAAACT CCCGC TGAAAGGGATACCTT aq_648 444064 - 445179 + | hypothetical protein aq_651 445759 - 445163 - | hypothetical protein nlpD1 446805 - 445756 - | lipoprotein TERM 291 446233 - 446244 + g 71 -4.4 -4.62102 | TATTTCTTTTACACT CGTT CTGA AACG TTTTGCTATTTTTAT TERM 292 446921 - 446936 + r 70 -9 -3.14132 | TACGAGTATTTCAAC CCTTCC GTCG GGAAGG TTCCTGACCCAACCG fliG 448048 - 447062 - | flagellar switch protein FliG frdB2 448742 - 448050 - | fumarate reductase iron-sulfur subunit TERM 293 448411 - 448436 + g 100 -5.4 -5.85011 | AAGGGTATGTTCGTG GGAAGGGGCT CAAACC AGACTCTTCC TTTTTTTAATTTTTC topA 448782 - 450404 + | topoisomerase I TERM 294 450438 - 450454 + F 72 -10.1 -2.62616 | TCGAACCGCCGACAC CCCGGTT TTC AGCCGGG TGCTCTACCACCTGA TERM 295 450705 - 450691 - f 70 -8.6 -3.3785 | opp_overlap 450690 GCAAGGTACTTATAA TTTCGG GTT CCGAAA ATCTGTACCCTGCGG TERM 296 450826 - 450837 + F 76 -4.4 -5.09245 | overlap 450824 ACGTGGTTATTTACC TTCC TTAA GGAA TTTTTATGATTTTAA TERM 297 450881 - 450860 - f 70 -5.9 -4.45738 | overlap 450862 GATTTTAATAAGAAA CTTGAATGA ATTA TCATTCACG AAAGTGTATACTAAA mbhS1 450916 - 451977 + | hydrogenase small subunit mbhL1 451992 - 453893 + | hydrogenase large subunit hoxZ 453886 - 454572 + | Ni/Fe hydrogenase B-type cytochrome subunit hupE 454585 - 455127 + | HupE hydrogenase related function TERM 298 455562 - 455546 - g 74 -2.2 -5.28755 | overlap 455538 AAATACAGGAAAAAA TTCCCC TCCTC GTGGAA GAAGCCCTATCTCAA hupD 455140 - 455628 + | HupD hydrogenase related function TERM 299 455680 - 455702 + G 75 -9.2 -3.64703 | opp_overlap 455679 455674 TTTGAGGAACTTAAT GGAAAAAGGT GAG ACCTTTGTCC TTTACGTGAGAAGCG aq_668 455615 - 455953 + | hypothetical protein aq_669 455947 - 456342 + | hypothetical protein TERM 300 456490 - 456454 - gf 71 -5 -4.57569 | overlap 456456 456458 TGAGGTCCTGAAAAA GATACTCTCCGCAAAC GACGA GCAGGCGGAGAGCAAC AGGAGGCACTTTGAA hypB 456335 - 457114 + | hydrogenase expression/formation protein B TERM 301 458744 - 458756 + GF 75 -9.1 -3.59733 | opp_overlap 458743 458740, overlap 458741 GGTAAAGGAACCGAG GAGGG TAG CCCTC TCTTTACTCTTTGAT hypF 457083 - 459323 + | transcriptional regulatory protein HypF atpC 459334 - 459732 + | ATP synthase F1 epsilon subunit TERM 302 459844 - 459833 - g 70 -5.8 -4.32046 | overlap 459834 459835 CTCTCAAAAATCAAA CCTC CTAA GAGG AATTACAGAATAATA aq_674 459716 - 460435 + | hypothetical protein aq_676 461010 - 460432 - | hypothetical protein TERM 303 460549 - 460527 - G 89 -9.9 -4.5448 | gap 1 TAGCCATAAAAAGAA CGTTGACGGG GTAT CCCG-CAACG AAGAGGAATAGAAAA aq_678 461599 - 461021 - | hypothetical protein TERM 304 463152 - 463136 - g 73 -4.3 -4.82162 | overlap 463138 GAGAAGAAGATAAAA GAGGCGC TCG ACGCCTT CAAGCAAAAGTTCGT atpA 461663 - 463174 + | F0F1 ATP synthase subunit alpha arsA1 464380 - 463190 - | anion transporting ATPase aq_684 464435 - 465184 + | hypothetical protein TERM 305 465450 - 465485 + G 71 -8.3 -3.53012 | opp_overlap 465442, overlap 465447 AGCAAAAGAGAGCTG TCCCACGGTTCCTGG AGCACG TCAGGAACACTGGGA TTTACCGGACCCCGC arsC 465181 - 465615 + | arsenate reductase TERM 306 465921 - 465905 - g 85 -7.9 -4.64144 | AACAACTTCCAAAAA CCCCCGT TCA ACGGTGG GAACCGTAACCGAGA TERM 307 466102 - 466075 - g 77 -11.4 -2.79809 | GAAAAAGGGTAATGA TTCTCTCCCCTA TAGT CAGGGGAAAGAA GGGAGAGTTCAGGGA uvrA 465627 - 468407 + | repair excision nuclease subunit A TERM 308 468429 - 468445 + T 78 -2.9 -5.42131 | overlap 468430 ATGTGGTCGGGGTTT TTCTTCG CCT CGTAGAG TTTTTTATCTACTTC aq_689 469414 - 468404 - | hypothetical protein TERM 309 468781 - 468803 + g 70 -2.7 -4.94902 | overlap 468782 TTAAATCCATCATTA TTACGGAGA AGGGG TATCCGTAG TTTTTATAATCCTTG TERM 310 468830 - 468854 + g 74 -3.6 -5.15634 | gap 1, overlap 468834 CTTGAAGTAATCCTC CAGAGCTTTCT GAAT AGAACGC-CTG TTTTTTAATCCGGTG gidA2 470764 - 469427 - | tRNA (uracil-5-)-methyltransferase Gid TERM 311 469880 - 469893 + g 70 -6.7 -4.01597 | opp_overlap 469879, overlap 469884 CCTGAGGCAGGGAAT GAGTC TAAA GACTC TCTTTTGTTCCTTGT TERM 312 470141 - 470161 + g 70 -5.5 -4.36554 | CTTAACCTTTTCGGC TTTTAGGAG TTC CTCGTAAAA TTTCTTATACTCCTC TERM 313 470574 - 470535 - G 85 -10.8 -3.84246 | opp_overlap 470537 GCCTCAATCACTAAA GAGCCGAGCTTCTGCA TTTCCGCC TTCAAAAGCCCGGCTC CAGTTGTTAATTCCA kpsU 470797 - 471501 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 314 471526 - 471512 - T 73 -5.6 -4.55485 | TATAAAAAAAGGAAA GCTCCT CGC AGGGGC AAAAAGGAACTGTCA aq_693 472783 - 471539 - | hypothetical protein acrD1 476142 - 472894 - | AcrB/AcrD/AcrF family cation efflux protein TERM 315 472947 - 472957 + g 79 -6.8 -4.64861 | TGGGACAGGCTTCTG GAGG CAT CCTC TTTATTTTGGAAGCA acrE 477271 - 476147 - | acriflavin resistance protein AcrE TERM 316 476348 - 476370 + g 72 -5.6 -4.44974 | overlap 476353 AATCGCCTTTTCAGG TATGAGAACC GTG GGTTCTTCTA TTTTCTCAAGTTTGA TERM 317 476353 - 476365 + g 74 -7.7 -4.02581 | overlap 476348 CCTTTTCAGGTATGA GAACC GTG GGTTC TTCTATTTTCTCAAG TERM 318 477136 - 477156 + g 74 -7.6 -4.28488 | gap 1, overlap 477139 TGACGGGCTCCACTA CCA-GACCG CTTA CGGTCTTGG TTTCTCTCTTTACCT aq_699 478581 - 477268 - | hypothetical protein TERM 319 477770 - 477780 + g 72 -5.4 -4.59027 | overlap 477767 GCACTTTTCTGACCT TCCT TTA AGGA TTTTATGTAGTACTT aq_701 479876 - 478635 - | hypothetical protein TERM 320 479790 - 479810 + g 87 -5.3 -5.41143 | GCCTATTATCTCGCT CTCAGGGTA ATC TTCCCGGAG TTTTTTTAAGAAGTA merR 480273 - 479863 - | MerR family transcriptional regulator dnaJ2 481409 - 480279 - | chaperone DnaJ truB 482343 - 481480 - | tRNA pseudouridine 55 synthase trpB1 482374 - 483567 + | tryptophan synthase subunit beta TERM 321 483699 - 483723 + G 91 -11.3 -4.09243 | GGAAGGTGCTTCCTG GGTGGCGGGCG GTA TGCTCGCCCCC TTTTCGGAAGGTCTG aq_707 483583 - 484644 + | hypothetical protein TERM 322 486410 - 486385 - g 74 -3.3 -5.04601 | overlap 486378 GGGATAAAGGAAAAA CCTCCCTTGAA AGAG TTTAAGGAAAG GGGAGATAAGTATCC hyuA 484648 - 486630 + | N-methylhydantoinase A nucI 487135 - 486617 - | thermococcal nuclease-like protein aq_711 487647 - 487132 - | hypothetical protein TERM 323 487224 - 487234 + g 70 -6.8 -4.0257 | opp_overlap 487224 TTATAGCGGACCAAA GGCT TAA AGCC TTATTAATTTTTCCC frr 488198 - 487644 - | ribosome recycling factor TERM 324 487910 - 487929 + g 85 -12.2 -3.29861 | overlap 487904 487911 CCCTTATCACGTTTC CCTGAACC GTTG GGTTCAGG TTCAGTTCTTCCCTT pyrH 488926 - 488204 - | UMP kinase tsf 489798 - 488926 - | elongation factor Ts TERM 325 489707 - 489720 + g 74 -3.1 -5.0538 | gap 1, overlap 489709 TCTATGTCACCGCCC GCCTCT TCA AG-GGC TTTTTTGCAGTCGAG TERM 326 489888 - 489868 - R 76 -11.1 -2.74514 | overlap 489880 GGAAAGTGTGAACTA TCCCGCATC ATA GATGCGGGG CTTCGGGTGGGTTTA aq_716 491269 - 489875 - | hypothetical protein TERM 327 490199 - 490180 - G 70 -9.3 -3.14211 | AGGTCTCTTTATTAA CAGCTCC CTCTAC GGAGCTG TCCACTCCCGAAGTG TERM 328 491325 - 491345 + H 86 -9.7 -4.07687 | opp_overlap 491341, overlap 491339 ACAGGCGGCTTCTGT CCCCGTATC ATA GATACGCGG TTTTAGCCCGCGGAT TERM 329 492033 - 492017 - g 75 -8.7 -3.78208 | opp_overlap 492016, overlap 492015 492018 ACGTAGAGGAAAATA CTCCCTG GAA CAGGGAA ATATCCTCAAGACTC TERM 330 492032 - 492018 - g 72 -10 -2.86202 | opp_overlap 492016, overlap 492017 492015 CGTAGAGGAAAATAC TCCCTG GAA CAGGGA AATATCCTCAAGACT glgP 491380 - 493458 + | glycogen phosphorylase TERM 331 495294 - 495308 + G 76 -8.6 -3.96148 | GTTCTGAAGGCTTTA TCCTAC GAC GTAGGA TTTGTAATGGAGCCC mpg 493455 - 495950 + | mannose-1-phosphate guanyltransferase aq_720 495947 - 497380 + | hypothetical protein glgA 497377 - 498768 + | glycogen synthase TERM 332 500570 - 500556 - gf 74 -6.4 -4.39828 | overlap 500558 AAGAGGCTGATAAAA TCCCGT GGC ACGGAA GAAAATTCTCACTTT glgB 498743 - 500635 + | glycogen branching enzyme TERM 333 502081 - 502060 - g 74 -2.2 -5.18357 | overlap 502044 GAATTTATTAAAAAA CTCCTCGG AATTTA CGGAAGAG AAGTTTAAAATAACT malM 500632 - 502089 + | 4-alpha-glucanotransferase (amylomaltase) TERM 334 502829 - 502841 + G 76 -4.1 -5.16841 | GTTTTCCCTTGCATG GATGG TAA TCATC TTTTTCTTACTCTCA TERM 335 504195 - 504180 - g 78 -5.4 -4.90266 | overlap 504181 GTTATGAAGGAAAAA CCTCAG AAGC CTGAGA AGGTATTCCTGGACA ctrA1 502101 - 504608 + | cation transporter E1-E2 family ATPase TERM 336 505174 - 505157 - g 93 -5.5 -5.48213 | GACTTAAAAGAAAAA GGATGTG TTTA CACCTCC CTGGATGAATTACTG TERM 337 505301 - 505279 - g 87 -13.6 -2.84574 | overlap 505276 TAGTTTAATGAAGGA CGGTGTTTAT TTG ATAAACACCG CGAGGGGAAAAGTTG ldhA 504614 - 505618 + | D-lactate dehydrogenase speC 505654 - 506826 + | ornithine decarboxylase TERM 338 507724 - 507704 - gf 83 -2.6 -5.55695 | gap 1, opp_overlap 507705 507706 507718, overlap 507705 507706 GAAGAATACAAAAAA GCCCTTGAA GAAG CTCAA-GGC TTTACCCTGATTGTG aq_729 506732 - 507745 + | hypothetical protein TERM 339 508182 - 508192 + G 70 -5.4 -4.39386 | TAACTTGATGTTTGC CTAC GCG GTAG TTTTAATCCTTTACC TERM 340 508207 - 508224 + G 71 -4.1 -4.82901 | GTTTTAATCCTTTAC CTCGTAA AAGC TCACGAG TTTTTATACAGGCAG ccdA 507757 - 508590 + | cytochrome c-type biogenesis protein hisH 508590 - 509213 + | amidotransferase HisH rpsG2 509685 - 509203 - | 30S ribosomal protein S7 rpsL 510075 - 509689 - | 30S ribosomal protein S12 TERM 341 509899 - 509922 + g 70 -5.4 -4.42386 | gap 1 GGTGACTTCAATACC GTTG-GAGAGT CTG ACTCTTGCAAC TTTTCTGAGTGCAGA lpdA 510161 - 511558 + | dihydrolipoamide dehydrogenase TERM 342 511739 - 511719 - g 76 -2.5 -5.186 | opp_overlap 511719, overlap 511721 TAAAAGACATAAAAA TGGTGGGAA ATG TTCTCACGA TAGTCTTTGAACCCC aq_737 511622 - 512716 + | hypothetical protein nifS2 512737 - 513957 + | FeS cluster formation protein NifS TERM 343 514316 - 514300 - g 73 -5.2 -4.65263 | opp_overlap 514300 514300, overlap 514286 514302 ATTCCTTAAAAGAAA TTCCTT TTTTG AAGGAA AAAAGGGAGTCTTTA aq_740 513969 - 515030 + | hypothetical protein purD 516285 - 515011 - | phosphoribosylamine-glycine ligase TERM 344 515753 - 515767 + g 80 -5.8 -5.06414 | opp_overlap 515755 ACAACTCTCTCCGAA GATTTT CCG AAAATC TTTTTATTCAGGAAC TERM 345 516236 - 516249 + g 71 -8.1 -3.724 | CTCTGTGCCACCTTC CACGC TATT GCGTG TTCTCTTCCTCCGTT TERM 346 516443 - 516413 - g 93 -15.4 -3.02739 | opp_overlap 516436 GGCAAGCGATATACA CCTCACCGCAGGCG CAC CACCCGCGGTCAGG ATTGACGGTTACATA TERM 347 517355 - 517338 - g 76 -8.5 -3.90328 | overlap 517341 TACAAGCTTTATAAA CAAGGTT TAAT AACCTTG GAAGATGCTATGGAA pilT 516321 - 517421 + | twitching motility protein PilT TERM 348 517411 - 517427 + F 75 -8 -4.13767 | AAAGAATGATTAGGG GAGGCA GGTAG TGCCTC TTTTCAAGTACAAGG TERM 349 517620 - 517631 + G 70 -5.8 -4.36914 | opp_overlap 517620 GTAGTGTATCGGAAA GGGA TTGG TCCC TTTTGTGCAGACAGC TERM 350 518173 - 518161 - g 74 -7.7 -4.0162 | opp_overlap 518160 CTTTTACAGGACAAA CCTGA AGT TCAGG GCTTTAATTCACAGA pilC1 517421 - 518647 + | fimbrial assembly protein PilC ispA 519428 - 518640 - | geranylgeranyl pyrophosphate synthase truA 520167 - 519442 - | pseudouridine synthase I pgi 521122 - 520160 - | bifunctional phosphoglucose/phosphomannose isomerase TERM 351 520916 - 520897 - G 77 -2.2 -5.37043 | gap 1, overlap 520898 520900 AGCTGATACAAAAAA CG-AGATAG TCC CTATCTACA AAGGGAGGAAGTGTG aq_752 523126 - 521156 - | hypothetical protein TERM 352 521997 - 522027 + g 78 -5.4 -4.90266 | overlap 521993 521998 CACTCTCCGCCCTTT TCGTAGAAGTGTTT GAA AAGCTCTTCAACGG TTTTTAGTTCCTGGA TERM 353 522269 - 522284 + g 74 -5.4 -4.60924 | GTTGAAGGTTCTGTA GAAGGG GTAG CTCTTC TTTTTCCAGAGTTTG TERM 354 522378 - 522394 + g 77 -4.3 -5.10767 | overlap 522379 522380 GCGTACATAACTTCT TGTCCCG CTT CGGGAAG TTTTTGTATTCCCTC aq_754 523422 - 523123 - | hypothetical protein aq_755 524143 - 523415 - | hypothetical protein aq_756 524829 - 524140 - | hypothetical protein TERM 355 524218 - 524239 + g 74 -5.8 -4.62051 | CGTGGGAAGGAGCCA GGACACCC TGAAGC GGTTGTCC TTTTCTCTAGTCTTT TERM 356 524353 - 524378 + g 76 -6.1 -4.56969 | overlap 524353 GGGAAGTTTTTTGTA GGGGAGCGGAA GGCT TTCTCTTCCCC TTTGTTTGTAGAATT aq_757 525361 - 524822 - | hypothetical protein aq_758 525855 - 525358 - | hypothetical protein TERM 357 525577 - 525601 + g 71 -2.2 -5.04868 | gap 1 AATTGTAACGTTTGC GGGA-ATGTTT GAAA GAACGTATCCC TTTTCTTTACTTTCC aq_759 526304 - 525855 - | prefoldin subunit alpha gidA1 526457 - 528310 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 358 528672 - 528652 - g 79 -11.2 -3.08996 | opp_overlap 528646 528645, overlap 528654 TACCTTTACTTAATA GAGGAGCT CAAAC AGCTCCTC AATAAACTCTTTGGC TERM 359 529062 - 529050 - g 79 -4.1 -5.28481 | overlap 529056 GAGGGAAGCAAAAAA GAGAA ATC TTCCC TTGGACGAGGACTTT genX 528310 - 529191 + | lysyl-tRNA synthetase iclR 529942 - 529169 - | IclR family transcriptional regulator TERM 360 529529 - 529544 + g 72 -10.4 -2.88249 | opp_overlap 529528 529529 529538, overlap 529539 GGCGGAAGCGTAAAG CGGGAG AACC CTCCCG TATCTCGAGAGTATC TERM 361 529544 - 529529 - G 71 -10.4 -2.79492 | opp_overlap 529529 529539, overlap 529528 529538 GGCGGAAGCGTAAAG CGGGAG AACC CTCCCG TATCTCGAGAGTATC aq_765 529976 - 531418 + | hypothetical protein aq_766 531396 - 532250 + | hypothetical protein TERM 362 532529 - 532519 - g 70 -6.8 -4.13767 | opp_overlap 532513, overlap 532521 TTCCCGACGTCAAAA GACC GAG GGTC CTCTGGATTGGTGTA aq_768 532257 - 532823 + | hypothetical protein purM 532826 - 533821 + | phosphoribosylaminoimidazole synthetase TERM 363 534200 - 534188 - g 87 -7.7 -5.07486 | overlap 534190 GACCTTGAACAAAAA GTGGT AAA ACCAC CCATTGACGTTGAAA aq_770 533978 - 534436 + | hypothetical protein TERM 364 534676 - 534658 - g 83 -6 -5.03145 | GAACGCTTTAAAAAA CTCCTTGA GAG TGAAGGAG AAGTTGGAAAGAAGC aq_771 534466 - 534825 + | hypothetical protein tly 534837 - 535613 + | hemolysin TERM 365 535739 - 535723 - g 79 -7.9 -4.42464 | overlap 535726 535727 AACCGTTGAAATAAA GTACGGG ACT CCCGTTC CGGAAATAGCCCAGA TERM 366 536048 - 536061 + G 86 -8.1 -4.78848 | TATAACTTGAGCGTG CCCTC CATG GAGGG TTTTCTCTTTCCGGA aq_775 535610 - 536590 + | hypothetical protein nadB 538119 - 536587 - | L-aspartate oxidase aq_778 539083 - 538097 - | hypothetical protein aq_780 539592 - 539080 - | hypothetical protein TERM 367 539385 - 539396 + g 91 -2.2 -5.77571 | TGTCAAAAATTACAA CATC TCCC GGTG TTTTTATTTTTTCAT hisD 540865 - 539585 - | histidinol dehydrogenase TERM 368 540527 - 540548 + g 76 -8.1 -4.26634 | gap 1 ACCGAGTATTATCCC CTCC-TCTTC TTT GAAGAAGGAG TTTTCCAATTGTTTT acrD4 544306 - 541304 - | AcrB/AcrD/AcrF family cation efflux protein TERM 369 541903 - 541884 - G 74 -10 -3.21593 | overlap 541882 CAGTCTTCCACAAGA GACCTCGC GGTC GCAAGGTC AATCCCCTCCAGATT TERM 370 543090 - 543068 - G 71 -8.4 -3.53343 | opp_overlap 543068, overlap 543072 AACGCCCGCCTCAAA GGGAGGAAGA CCC TCTTCCCGCC TTCTGTGTATGCTTT TERM 371 543663 - 543683 + g 72 -3.1 -4.94992 | overlap 543661 543667 TTTCCGTAAACGTTT CCCGCGGGA ATA TCCTGATGG TTTTTGTCAATTTCC aq_788 544376 - 545545 + | hypothetical protein aq_789 545563 - 546648 + | hypothetical protein aq_791 546645 - 547136 + | hypothetical protein cycB1 547161 - 547661 + | cytochrome c552 rpmI 547720 - 547923 + | ribosomal protein L35 rep 549907 - 547898 - | ATP-dependent DNA helicase REP TERM 372 548147 - 548168 + g 71 -2.4 -5.12172 | gap 1 CTTCGGAATGTCGGA CA-AAAACC TGCTC GGTTTTCTG TTTTCTTTCTTGGTG aq_796 549949 - 550347 + | hypothetical protein TERM 373 550333 - 550322 - f 80 -4.4 -5.30686 | AAGACGTACAAAAAA TCCT ATTC AGGA GAGGTGAAAAATGAA TERM 374 551288 - 551273 - g 70 -5.4 -4.3898 | opp_overlap 551273 ACTAGTGGGAGAAAA GACCTT CGGT AAGGCC TCCGTTCAAAACCTG prc 550344 - 551570 + | carboxyl-terminal protease gcp 551567 - 552574 + | sialoglycoprotease mbhS3 552695 - 553549 + | hydrogenase small subunit TERM 375 554346 - 554315 - g 74 -9.6 -3.38281 | overlap 554310 TTACTCAAAAGCTAA TCCCGTAAGGTA CAAAGGCT TACCTTACGAGA CAGGGCCCCTCGCCC mbhL3 553539 - 554789 + | hydrogenase large subunit aq_805 555257 - 554790 - | hypothetical protein pyrC 556529 - 555261 - | dihydroorotase aq_808 557457 - 556543 - | hypothetical protein aq_809 558272 - 557454 - | hypothetical protein aq_811 558718 - 558269 - | hypothetical protein TERM 376 558373 - 558362 - G 73 -4.4 -4.74518 | AATTACCAAAACAAA GGTT ATTA AACC AAGAACCAGAATAAA TERM 377 558705 - 558717 + g 74 -7.7 -4.10161 | overlap 558707 TGAACTATCGGCGGA TGGAG AAC CTCCA TTTTAGCCCCTCCTG TERM 378 559154 - 559174 + G 85 -7.7 -4.73388 | opp_overlap 559154 AGATTCTTGAATCTA TTTCACAAT AAA ATTGTGGAA TTTTTCGTAAAAGTT aq_812 558785 - 559891 + | hypothetical protein acpS 560256 - 559888 - | holo-[acyl-carrier protein] synthase TERM 379 560137 - 560091 - G 100 -14.5 -4.10855 | gap 1, overlap 560094 560135 560136 AAAAGGCTTTTAAAA CAGCTTCCTTCCCCGCC-CACC TCGC GGCGAGGCAGGGAAGGAAATCG CAGTGTGCGTAGCAG TERM 380 560134 - 560094 - G 100 -17 -2.78211 | gap 1, overlap 560091 AGGCTTTTAAAACAG CTTCCTTCCCCGCC-CACC TCGC GGCGAGGCAGGGAAGGAAA TCGCAGTGTGCGTAG aq_814 561119 - 560253 - | hypothetical protein dfp 562285 - 561119 - | pantothenate metabolism flavoprotein TERM 381 561387 - 561401 + g 72 -8.6 -3.63837 | overlap 561383 TTCCTTCCGAGTTCT TCCAGA ATG TCTGGA TTCTTCACGAGTTCT TERM 382 561747 - 561757 + g 84 -6.8 -5.08601 | ATTAAAACCTTCTTT CCCT TTA AGGG TTTTTCTTCGGATAC gsa 562310 - 563584 + | glutamate-1-semialdehyde aminotransferase TERM 383 564287 - 564308 + GF 71 -8.1 -3.71649 | gap 1, overlap 564287 ATAGCCTTCTTCCTG CT-CCTTTCC TTC GGAAAGGAAG TTTCGCCTTTGGAAA aq_818 563588 - 564562 + | hypothetical protein TERM 384 565255 - 565239 - gT 81 -3.6 -5.40474 | AGCGGTTGAAAAAAA GCCCGA TTTAG TCGTGC TCCCAGAGTCTGCAT lnt 564520 - 565839 + | apolipoprotein N-acyltransferase aq_820 566418 - 565822 - | hypothetical protein murF 567745 - 566408 - | UDP-MurNAc-pentapeptide sythetase TERM 385 568599 - 568616 + H 70 -9.8 -2.52464 | CCTAGCACTGTCCCC GCGGGG GATTCA CCCCGC TGGGTTAGGACCCCA TERM 386 569507 - 569525 + H 75 -10.3 -3.10894 | overlap 569479 569477 CTTGGGCTTCCGGCG GGCAGGT TTCTC ACCTGCC TTCGCTCCTACTCAT TERM 387 570315 - 570326 + H 76 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC GCCA GGGG TTCTTTTCACCTTTC TERM 388 570585 - 570622 + H 74 -9.2 -3.59979 | gap 2 GCACGTCCCGCTACC CCCTGTG-G-GCTAAGGC CGCC GCCATGGCACCCACAGGG TTTGGGCTGAGCCCC TERM 389 570711 - 570744 + H 70 -8.7 -3.32844 | overlap 570735 570736 GGTTTTGCTTCGGCC GGTTCCCTTCCCGCC CGAA GGCGGGATGGCAGGC TTGTCGCCTGCCGGG TERM 390 570933 - 570963 + H 83 -12.6 -2.70932 | opp_overlap 570931 570926 570956 GACAAGGAGCCAAGT GGAGGTGGTGGG ACTCGAA CCCACGACCTCC TGCTTGCAAAGCAGG TERM 391 571165 - 571184 + H 91 -10.7 -4.58076 | opp_overlap 571158, overlap 571158 571180 ACTAGACAGGGATGA GCTCCCC TTTTGT GGGGAGC TTTTGTCTCCGTTAT TERM 392 571287 - 571306 + H 100 -15 -3.05715 | overlap 571302 CATCGGCCCCTGCCT CCGGCTCC CGAA GGAGCCGG TTAGCTCGGGGACTT TERM 393 571756 - 571741 - H 77 -10.4 -3.31461 | TAGGGACTTCCACAA CTCCGC TTTC GCGGAG TCTCCCCGGCATGTC TERM 394 572130 - 572150 + H 82 -11.1 -3.60475 | CAGTTCGGGATGCCG GTCCACGGT TGA GCCGTGGGC TTTGACATCCCGCTT TERM 395 572550 - 572585 + H 83 -11.8 -3.14931 | gap 1, overlap 572554 572574 572575 CCCAGGCGGGAGCGT GGC-CGAAGGCCAGAGG CCC CCTTTGGCCACCGCGCC TTAGTGGCGGGTGGC TERM 396 572574 - 572601 + H 72 -9.1 -3.3676 | gap 1, overlap 572550 572575 CCAGAGGCCCCCTTT GGCCACCGCGCC TTAGT GGCG-GGTGGCA TTATGGGGTATTAGC TERM 397 572575 - 572600 + H 83 -12.6 -2.61735 | gap 1, overlap 572550 572574 CAGAGGCCCCCTTTG GCCACCGCGCC TTAGT GGCG-GGTGGC ATTATGGGGTATTAG TERM 398 572616 - 572631 + H 86 -11.8 -3.31792 | overlap 572605 ATTATGGGGTATTAG CCCCGG TTTC CCGGGG TTATCCCCCTCCTGG TERM 399 572636 - 572649 + H 70 -9.5 -2.52676 | overlap 572642 572644 GTTTCCCGGGGTTAT CCCCC TCCT GGGGG TAGGTTACCCACGTG exsB 573050 - 573706 + | trans-regulatory protein ExsB surE 574444 - 573689 - | stationary phase survival protein SurE flgA 575119 - 574448 - | flagellar protein FlgA flgG2 575837 - 575049 - | flagellar hook basal-body protein FlgG TERM 400 575282 - 575306 + gH 73 -10.1 -2.77501 | overlap 575281 575290 575304 GATTATTCCCTATTC TTCTTAAACCC GCG GGGTTTACGAA CTTTGCGAGTTCTAT nox 575881 - 577305 + | NADH oxidase aq_836 577960 - 577262 - | hypothetical protein ilvD 578040 - 579707 + | dihydroxyacid dehydratase trm1 580882 - 579704 - | N(2),N(2)-dimethylguanosine tRNA methyltransferase TERM 401 580561 - 580580 + g 78 -8.6 -4.0098 | CCATCCCGTGTATCT CGTACCTG TCTT CAGGTATG TTGTTTAGCTTGAAG aq_843 580901 - 581302 + | hypothetical protein spoT 583393 - 581303 - | (p)ppGpp 3-pyrophosphohydrolase TERM 402 582251 - 582235 - G 71 -3.7 -4.77757 | opp_overlap 582236, overlap 582236 GGGTAAAAACGAAAA CCTCTTC AAA AAAGAGA TTACTCTTCAGGTTT mreB 583431 - 584456 + | rod shape determining protein MreB aq_847 584453 - 585247 + | hypothetical protein aq_848 585510 - 585842 + | hypothetical protein TERM 403 585948 - 585958 + T 79 -5.4 -4.89605 | GTGTCATGGGATGGT GCTT TTC AAGC TTTCTTATTTTTTTG aq_849 587379 - 586081 - | hypothetical protein TERM 404 586540 - 586558 + g 74 -3.8 -4.98103 | overlap 586549 AAATCCCACTATGAA CGTCGT CCTGAAT ACGGCG TTTTCTATTTTCTTC aq_850 587806 - 587390 - | hypothetical protein corA 588756 - 587797 - | Mg(2+) and Co(2+) transport protein TERM 405 588265 - 588250 - G 70 -7.6 -3.86346 | opp_overlap 588250 588252 CGATTGTTCCACAAA CATCTG TCTC CAGATG TCCTTAATCTTGTTT pdxA 589705 - 588743 - | pyridoxal phosphate biosynthetic protein PdxA TERM 406 588966 - 588952 - G 79 -2.8 -5.4433 | overlap 588946 ACATACAAAGAAAAA CGTC TTCCTCT GACG GATTTATAAAAGCAA aq_853 590042 - 589698 - | hypothetical protein aq_854 591690 - 590053 - | hypothetical protein TERM 407 591044 - 591062 + g 73 -6 -4.39828 | overlap 591046 591061 ATTTTGGGGCTGTTT GGGTACTT TTC AAGTACGC TTTTGTAGAGCTCTT TERM 408 591475 - 591489 + g 71 -4.2 -4.7871 | overlap 591477 TTCCAGAAATTCCTT GGCAAG TTC CTTGGC TTTTTCGTACTCCTT aq_855 592580 - 591687 - | hypothetical protein purN 592596 - 593246 + | phosphoribosylglycinamide formyltransferase ahpC2 594194 - 593526 - | alkyl hydroperoxide reductase TERM 409 594162 - 594151 - G 72 -7.2 -4.07568 | overlap 594152 GTTTGTGCTTCAAAA GCCG GTGC CGGC TCACCGAGTCTCGGC aq_862 594945 - 594616 - | hypothetical protein aq_863 597961 - 594938 - | hypothetical protein TERM 410 597001 - 597020 + g 70 -5.8 -4.39166 | overlap 597016 CCTCTTCAATCTTTT CTTCAAAG AACC TTTTGAAG TTTTCATATGTAGGC nuoL2 600338 - 597975 - | NADH dehydrogenase I chain L rpsU 600596 - 600393 - | ribosomal protein S21 nadC 601706 - 600882 - | quinolinate phosphoribosyl transferase TERM 411 601662 - 601673 + g 73 -4.4 -4.81523 | overlap 601664 601665 TGTTCCTATGTCTTC GAGT AAAA ACTC TTTTAGTTTTTCCTT TERM 412 601998 - 601977 - g 76 -6.5 -4.49906 | opp_overlap 601977 601986 GAAGAGGGAAATAAA GCCGAGGTA CGCC CACTTCGGC GTTCTCTACGACGAT TERM 413 602568 - 602554 - g 70 -10 -2.52464 | opp_overlap 602535, overlap 602535 TCCCTCTTTAACGCA CTCCTC AAA GAGGAG AGGGCTATAGTCACG trmE 601852 - 603198 + | tRNA modification GTPase TrmE rho 603214 - 604524 + | transcription termination factor Rho rpmE 604575 - 604781 + | ribosomal protein L31 TERM 414 605392 - 605406 + G 87 -11.4 -3.62522 | GGATTCACACCTCAA CCGCCA CCG TGGCGG TTCTTCCCGAAGTTG prfA 604785 - 605873 + | peptide chain release factor RF-1 TERM 415 606016 - 606027 + T 73 -7.2 -4.00756 | overlap 606019 CCTCTACTATACTCG GCGG AAGT CCGC TTCTTTCGTAAGATA minD2 606899 - 606111 - | septum site-determining protein MinD minC 607483 - 606878 - | septum site-determining protein MinC TERM 416 606958 - 606970 + g 71 -10.5 -2.73529 | overlap 606955 CTATTTTTGCAACTT CCGGG TAT CCCGG TGAGTTTCTATCCGC aq_880 607507 - 608085 + | hypothetical protein TERM 417 608113 - 608088 - T 70 -9.7 -2.7395 | opp_overlap 608106, overlap 608087 608090 ACACAGGTTTTAAAT GAGACGCCC GCCCTTCA GGGCGTCCC TCACCGCCTTTTCTA aq_881 609968 - 608082 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 418 608681 - 608713 + g 81 -12 -3.09273 | gap 1, overlap 608712 CAAAAACTCCGTGGT GGGTGGGAC-CGTCG TCTC CGACAAGTCCCGCCC TGTCTATTGCGAAGG TERM 419 609241 - 609229 - G 70 -5.5 -4.43477 | overlap 609230 CCTATGTAATTAAAA CCGAG TTC CTCGA AAATAACTCCGGGTG topG2 613846 - 610406 - | reverse gyrase TERM 420 613679 - 613693 + g 72 -8.6 -3.5764 | opp_overlap 613679 TTTCAGCTCGGATAA GAGTTC GCA GAACTC TTTAAAGCTCCCATT aq_888 613977 - 614423 + | hypothetical protein aq_890 614467 - 615270 + | hypothetical protein ppx 616188 - 615250 - | exopolyphosphatase TERM 421 615420 - 615437 + gF 74 -6.3 -4.43208 | GCCTGAACCTCTTAC TCCTTTC CTCC GAAGGGA TTTCTTTGAAAGTAT fabD 616148 - 617128 + | malonyl-CoA:Acyl carrier protein transacylase aq_893 617125 - 617976 + | hypothetical protein queA 618969 - 617965 - | queuosine biosynthesis protein TERM 422 618433 - 618460 + g 72 -5.5 -4.54727 | TTCTGAAAAGTGCAG GGAAGCGGTGG GAGATG CTACTGCTCCC TTTTCCTTTGCAAAA TERM 423 618820 - 618801 - G 82 -10 -4.07568 | overlap 618802 TCGTGTTGTTGAAAA CGAGGAGG TCCC CCTCCTCA AGGTAGTCGGGAAGG TERM 424 618819 - 618802 - G 79 -11.3 -3.04398 | overlap 618801 CGTGTTGTTGAAAAC GAGGAGG TCCC CCTCCTC AAGGTAGTCGGGAAG ispB 619896 - 618982 - | octoprenyl-diphosphate synthase nifU 620083 - 620556 + | NifU protein TERM 425 620579 - 620597 + GF 75 -9.5 -3.33003 | opp_overlap 620575 AAAAGAAAAGCTCTG GCCCTCC TTTCC GGGGGGC TTGATAGTTCTCTTG aq_898 620558 - 621313 + | hypothetical protein aq_899 621274 - 621606 + | hypothetical protein aq_900 621726 - 622097 + | hypothetical protein TERM 426 623002 - 622985 - g 79 -6.9 -4.69214 | opp_overlap 622984, overlap 622987 GACTTAATAAAGAAA GACCACG TAGT CGTGGAC ATAATCTACAAAGAG TERM 427 623000 - 622987 - g 72 -8.1 -3.94772 | opp_overlap 622984, overlap 622985 CTTAATAAAGAAAGA CCACG TAGT CGTGG ACATAATCTACAAAG aroE 622364 - 623173 + | shikimate 5-dehydrogenase TERM 428 623495 - 623481 - g 79 -2.8 -5.39721 | GCATTAGACAAAAAA CACG GAGGTGT CGTG AGCGTTTTTAACATT aq_903 623166 - 623621 + | hypothetical protein aq_904 623622 - 624131 + | hypothetical protein hksP3 625825 - 624284 - | histidine kinase sensor protein phoU 626483 - 625818 - | transcriptional regulator (PhoU-like) TERM 429 626457 - 626477 + g 77 -9.1 -3.81689 | TACCTGTTCCTTTGT CTCTTCAAG TTC TTTGAAGAG TTTCATAATAGTATT TERM 430 626907 - 626891 - g 77 -2.2 -5.40474 | gap 1, overlap 626877 AGGGGTTTAAAAAAA GCCCACG ACCT CG-GAGC AACCACGATAGCCTT gmhA 626498 - 627073 + | phosphoheptose isomerase TERM 431 627734 - 627761 + G 70 -9.9 -2.89602 | opp_overlap 627728, overlap 627733 CGGAAAATATGGAAG CCTTCTTGACC TTGGAC GGTCAGGAGGG ATTTCATCTAAAGAA aq_909 627058 - 627882 + | hypothetical protein dnaC 628575 - 627868 - | DNA replication protein DnaC ebs 629369 - 628608 - | erythrocyte band 7-like protein aq_913 630031 - 629378 - | hypothetical protein TERM 432 630362 - 630349 - g 70 -6.7 -4.08394 | AGAGCTCGTGGAAAA TCAGG TTTA CCTGA GACTTTACGACAAAA aq_914 630065 - 630421 + | hypothetical protein aq_915 630432 - 631238 + | hypothetical protein TERM 433 632110 - 632098 - g 77 -9.1 -3.85698 | GGTTTTCGGTAGAAA GGGAG AAG CTCCC AGAAAAGAGGACGAG dapB 631526 - 632323 + | dihydrodipicolinate reductase TERM 434 632315 - 632327 + T 76 -9.1 -3.66117 | overlap 632306 ATGTTTGACGTGCTC GGGCT CTG AGCCC TCTTTATATGCTTCA aq_917 633519 - 632293 - | hypothetical protein aq_918 633977 - 633516 - | hypothetical protein aq_919 633962 - 634441 + | hypothetical protein fdx1 634728 - 634438 - | ferredoxin ftsY 636164 - 634779 - | cell division protein FtsY TERM 435 635274 - 635294 + g 77 -3.1 -5.24449 | overlap 635275 CGCCGCCCTGAAGGT GTCTCCCGC AAC GAGGAGGAC TTTTTTACCTTTCTG TERM 436 635429 - 635445 + g 77 -6.6 -4.57837 | overlap 635411 635430 635442 CCTGACAGTTTTTCA GGAGTT CCTTT AACTCC TTTTTGAGGAGCTCT TERM 437 635430 - 635459 + g 72 -3.6 -4.89567 | overlap 635411 635429 635442 CTGACAGTTTTTCAG GAGTTCCTTTAA CTCCTT TTTGAGGAGCTC TTTTATCTTTTCCCC aq_922 637814 - 636198 - | hypothetical protein TERM 438 636762 - 636772 + g 70 -5.4 -4.37092 | overlap 636757 GGGGGAGTAATTGTC CCTT GGC AAGG TTTTATCAAGGGCGT TERM 439 638753 - 638743 - g 70 -5.4 -4.31293 | overlap 638739 638744 GGAGAGACTAATAAA CCTT TTA AAGG AAAAGGGATACGTTT TERM 440 639210 - 639196 - g 73 -2.8 -5.14698 | AAAGGCAAAAGAAAA GAGTTC CGA AAACCC CGTTTACTACGTACA argS 637841 - 639592 + | arginyl-tRNA synthetase rnpH 639612 - 640379 + | RNase PH aq_926 640337 - 641095 + | hypothetical protein aq_928 641141 - 641731 + | hypothetical protein TERM 441 642025 - 642041 + G 80 -10.1 -3.73953 | opp_overlap 642025 AATATGTTAATGAGA GTGGGCC TTT GGTCCAC TTTAGTCGCAATAGT TERM 442 642499 - 642512 + G 76 -8.1 -4.17048 | opp_overlap 642491 642490, overlap 642491 642490 CATAAATTCGGTTCT CCGAG TATT CTCGG TTCTTTTACCGCAGG napA2 641743 - 642969 + | Na(+)/H(+) antiporter aq_931 643202 - 643591 + | hypothetical protein dnaQ 644321 - 643713 - | DNA polymerase III epsilon subunit purS 644529 - 644296 - | phosphoribosylformylglycinamidine (FGAM) synthase, PurS component aq_933 645313 - 644552 - | hypothetical protein TERM 443 645069 - 645082 + g 74 -2.3 -5.24551 | overlap 645070 ATCTCCTTGATATAT TCGGG TTTC TCCGG TTTTTCTTCCTTTAA aq_935 645783 - 645310 - | hypothetical protein TERM 444 647644 - 647612 - g 71 -9.3 -3.30441 | GAGGAGTTCGTAGAA GTGTTCAAGCTCTAC GGT ATAGAGCTTAAAGAC AAGTGTAAGAAAGAG ftsH 645833 - 647737 + | cell division protein FtsH leuC 647737 - 649035 + | 3-isopropylmalate dehydratase large subunit TERM 445 649116 - 649133 + F 72 -3.3 -5.07053 | AGCCTTCTCACACCT GAGGCGG TTCA CGGTCTC TTTTTTAACCTCCTT TERM 446 649812 - 649825 + F 72 -4.5 -4.7078 | opp_overlap 649810, overlap 649815 TATAATAAATTTACA GCCTT GCTG AGGGC TTTTTAGCTCCTTGG aq_943 650221 - 650544 + | hypothetical protein TERM 447 650879 - 650852 - g 72 -8.4 -3.63627 | gap 1 TTGCGACACTTGAAA GCGGGAAGTGGGC CGG ACCCG-TTCCCGC ACTCGTGGAGGGCGA gcsH3 650617 - 651102 + | glycine cleavage system protein H glyQ 651393 - 652250 + | glycyl-tRNA synthetase subunit alpha TERM 448 652815 - 652801 - g 79 -2.8 -5.34655 | overlap 652806 GAAGCAAAAATAAAA GAGTAC CGA ACACTC GGCGAAGGAAAGAGC rnc 652228 - 652893 + | RNase III TERM 449 653321 - 653307 - g 77 -3.4 -5.243 | GAAAGGAGCAAAAAA GCCCTC AAA GCGGAC CACATTAAAGTTAAG hemH 652890 - 653819 + | ferrochelatase TERM 450 653848 - 653834 - f 73 -7.1 -4.07675 | opp_overlap 653834 GTAAAATTAAGTAAA GGGCT TTTTT AGCCC TCTCGTGGCTCCTTG aq_950 654176 - 654538 + | hypothetical protein pheA 655630 - 654542 - | chorismate mutase/prephenate dehydratase TERM 451 655824 - 655802 - g 75 -10.6 -2.95409 | GAAGCAGTAATGAGA GCCCTGTACT ACC AGTACAGGGA CAGAAAACTCAGAAA rplT 655685 - 656041 + | 50S ribosomal protein L20 TERM 452 656762 - 656778 + G 70 -9.5 -2.9732 | opp_overlap 656750, overlap 656759 AAACTGACCTTCCTG TGAGGTT CAG AACCTCA TACTTTCCCTTCACG pheS 656041 - 657057 + | phenylalanyl-tRNA synthetase alpha subunit lepB 657066 - 657836 + | type-I signal peptidase aq_957 657836 - 658306 + | hypothetical protein TERM 453 658486 - 658464 - gT 74 -3.5 -5.05116 | CGAGAAAGAATAAAA GAGTTTC AAACTTTGG GAAACTC CTCGATCCTTACGCG TERM 454 658493 - 658508 + GT 72 -3.3 -4.94902 | overlap 658499 658501 GGGAAACTCCTCGAT CCTTA CGCGGA TAAGG TTTTTGTCCTGCTTC nadE 660499 - 658796 - | NH(3)-dependent NAD+ synthetase TERM 455 659059 - 659071 + Gg 93 -10.5 -5.02476 | GATTTGGTCTGAGCT CCGCC GAA GGCGG TTTTTTAAACACTCT pgsA2 658313 - 659230 + | phosphotidylglycerophosphate synthase TERM 456 659931 - 659916 - GT 73 -4.6 -4.79174 | overlap 659918 ACGTAAGCAACAAAA CAGAGG TTAT CCTCAG CCCTTGACTTTAAAA mbhL2 662204 - 660510 - | hydrogenase large subunit TERM 457 661307 - 661320 + g 70 -6.7 -4.04174 | opp_overlap 661306 661303 CTTTTATGAAAGTAG GTGGT ATGA ACCAC TTTCCTTCTCTCCAG TERM 458 661770 - 661781 + g 73 -4.4 -4.81083 | opp_overlap 661770, overlap 661763 AACTTCCCTGAAATA TCCA GGTG TGGA TTTTTCGTAATTAGA hdrD 663505 - 662201 - | heterodisulfide reductase aq_963 664198 - 663518 - | hypothetical protein mbhS2 665247 - 664198 - | hydrogenase small subunit TERM 459 664382 - 664339 - G 81 -9.6 -4.03413 | gap 1, opp_overlap 664342, overlap 664318 664317 664340 AGGGTTGTATATAAA TCCCCTGTCCCAGAAG-TCAG GTT CTGAGCATCCGAAACAGGGGT GTCCGGATTGTATCG TERM 460 664381 - 664340 - G 86 -13.1 -3.01726 | gap 1, opp_overlap 664342, overlap 664318 664317 664339 GGGTTGTATATAAAT CCCCTGTCCCAGAAG-TCAG GTT CTGAGCATCCGAAACAGGGG TGTCCGGATTGTATC TERM 461 665636 - 665623 - H 80 -8.1 -4.38472 | GTTAAAGTAAAAGAA CCTCC GGAG GGAGG AAGGGCTAACCAGAG TERM 462 666163 - 666151 - g 70 -5.5 -4.36378 | opp_overlap 666151 TAAAAAGATAAAGAA CGCAA CAT CTGCG GTTTTCTTGAAAGGG aq_966 666041 - 666550 + | hypothetical protein TERM 463 667032 - 667071 + G 74 -10 -3.21099 | gap 1, opp_overlap 667067 667068 TCCCATTTTCTACCT GCCCGTTTACCTGATTCCC CTC GGGGGA-AGGAAAACGGGC TTCCTCATGCCCACG ostA 666538 - 668499 + | organic solvent tolerance protein cbbE2 669164 - 668496 - | ribulose-5-phosphate 3-epimerase TERM 464 668972 - 668995 + g 76 -3 -5.24796 | overlap 668982 TTTCTATCATAAGGT GGGCATCTAT GGGA AGGGAAGCCC TTTTTCTTATGTGAG tmk 669174 - 669761 + | thymidylate kinase argJ 670877 - 669738 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 465 670587 - 670577 - G 78 -5.4 -5.00616 | opp_overlap 670577 TTCCTGTGGAAAAAA CGAA GAC TTCG TCCTTTGGAATATCC aq_972 672164 - 670887 - | hypothetical protein TERM 466 670974 - 670988 + g 81 -2.1 -5.47218 | overlap 670968 670974 TTTAAGTGCGAGCTT GTAGT TCTCT ACTGC TTTTTTTACATCACC TERM 467 671726 - 671740 + g 80 -5.7 -5.03314 | CTATCTGGAGGAGGA TGCTC AGACC GAGCA TTTTTTCAAGGTACC secD 672190 - 673695 + | protein export membrane protein SecD TERM 468 673847 - 673830 - g 73 -4.9 -4.6971 | gap 1 GAAAGTTGAAGAAAA CCTCT-AC ATG GTGAGAGG AAACGATGGACTTCC cphA2 673738 - 674661 + | beta lactamase precursor bioB 674673 - 675671 + | biotin synthetase aq_977 675750 - 676754 + | hypothetical protein aq_978 676751 - 677188 + | hypothetical protein aq_979 677787 - 677185 - | hypothetical protein TERM 469 679277 - 679267 - g 74 -6.8 -4.36554 | GAGTACTACAAGAAA CTCG TTG CGAG CGAAGGCGAGAGGAT TERM 470 679974 - 679956 - g 85 -8.2 -4.71061 | AGGCAGAGTTAAAAA GATTTCCC ACG AGGAAATC CCGAAAACCAACAGA gyrA 677905 - 680139 + | DNA gyrase A subunit TERM 471 680836 - 680818 - g 80 -7.4 -4.59109 | GACATCCCTCAAAAA GAACCCTC AAC GAAGGCTC AGGAACTCTACTTTG TERM 472 680880 - 680865 - g 71 -4 -4.77986 | overlap 680855 TGAAATACTCAAAAA GTACCT CAGG AAGTAC AGAAAGGAAAAGAGC aq_983 680212 - 681090 + | hypothetical protein aq_985 682298 - 681087 - | hypothetical protein aq_986 682805 - 682302 - | hypothetical protein aq_987 683275 - 682778 - | hypothetical protein TERM 473 682981 - 682995 + gr 77 -10 -3.38162 | CTTTATCCGCAAGCT CGAGAG CAG CTCTCG TTGCCTTTCTTACCT aq_988 683881 - 683288 - | hypothetical protein aq_990 684636 - 683881 - | hypothetical protein TERM 474 684344 - 684334 - G 74 -5.4 -4.68424 | opp_overlap 684334 GAAGTGAGGTAAAAA TCTG TAC CAGA GTTTGGGAATTAAGG trpS 684685 - 685872 + | tryptophanyl-tRNA synthetase TERM 475 686659 - 686673 + G 72 -5.7 -4.4715 | opp_overlap 686653, overlap 686661 ACGTCATAAGCTTCA GCGAA AAGCC TTCGC TTTTCTGGGTTAAAA aq_993 685872 - 686903 + | hypothetical protein pncA 686941 - 687537 + | pyrazinamidase/nicotinamidase dnaK 687606 - 689504 + | Hsp70 chaperone DnaK fadD 691992 - 689521 - | long-chain-fatty-acid CoA ligase TERM 476 692468 - 692481 + r 73 -8.1 -3.87576 | opp_overlap 692468 CCAAGGAGCCCGAAA GCCCT CAGC AGGGC TTTAAATTATTATAC motB2 693170 - 692496 - | flagellar motor protein MotB-like TERM 477 692691 - 692703 + g 89 -2.7 -5.72622 | overlap 692682 GAGTTCCCACTTGTT TCTAA TAA TTGGA TTTTTTATTTCTACC motB1 693888 - 693181 - | flagellar motor protein MotB TERM 478 693377 - 693355 - G 75 -10.6 -2.87132 | opp_overlap 693349 693347, overlap 693357 TGCCCTTGCCATAGA GAGTTCCCAG TTG CTGGGAAATC TCGGCGTGCTTATGG motA 694656 - 693892 - | flagellar motor protein MotA TERM 479 694222 - 694189 - G 78 -11.1 -3.14468 | gap 1 TCCTATCATACCGAA GGCG-GGGAAAAGGTC TGC GAGCTTTTCCCACACC GCGACTTCCGTTGAC TERM 480 694448 - 694465 + g 76 -2.7 -5.24129 | gap 1 TCGTTGAGGTCGGGA GGT-TTCC AGA GGAACGCC TTTTTTATAGCGAGA cutA 694699 - 695013 + | periplasmic divalent cation tolerance protein TERM 481 697413 - 697403 - g 72 -6.8 -4.20025 | opp_overlap 697409 697410 AAGGCTCAAGAGAAA GGAG GAG CTCC AGAAGGAGATTTCCG aq_1006 695010 - 697946 + | hypothetical protein dnaE 701428 - 697943 - | DNA polymerase III alpha subunit TERM 482 698578 - 698606 + g 72 -5.4 -4.53705 | gap 1 GGTCGAGTTCTTCCA CTTCTTCTTTCGG TGCA CCGAAA-AGGGAG TTTTGTGTAGCCATT udh 702204 - 701440 - | dehydrogenase aq_1012 702179 - 702643 + | hypothetical protein TERM 483 703540 - 703520 - g 87 -11.3 -3.5812 | overlap 703518 TAGTCAGTATAAATA TCCTTACAA CCA TTGTAAGGA CTTGGGACAACGTGG aq_1013 702655 - 703965 + | hypothetical protein col 705178 - 703949 - | collagenase TERM 484 705253 - 705236 - H 70 -5.7 -4.43911 | opp_overlap 705219 705218 AAATTTTAAGTAAAA TTTAACT TATA AGTTAAA TGTGGATACGAAGAA aq_1017 705255 - 705662 + | hypothetical protein aq_1018 705653 - 706033 + | hypothetical protein TERM 485 706234 - 706217 - f 75 -2.7 -5.2853 | overlap 706212 TATTCAAAAAGAAAA GAAAAGA AATT CCCTTTC AAAGCTAAGTTGAAG hypE 706456 - 707454 + | hydrogenase expression/formation protein hypA 707454 - 707801 + | hydrogenase accessory protein HypA aq_1022 707801 - 708835 + | hypothetical protein acuC1 709959 - 708832 - | acetoin utilization protein aq_1024 710791 - 709946 - | hypothetical protein TERM 486 710272 - 710253 - G 77 -10 -3.53761 | opp_overlap 710253 710252 710258 TAAGGTTCTTTTAAA GCCCTGGA AATC TCCAGAGC CCTTTTTGAGTTTTC gyrB 713159 - 710781 - | gyrase B TERM 487 710943 - 710957 + g 70 -10 -2.55351 | overlap 710942 GTTCATGGTGGTTTC CCAGAG CTG CTCTGG ATTCATCTCACCGAG TERM 488 711941 - 711960 + g 70 -5.6 -4.30987 | opp_overlap 711941 711942, overlap 711942 GCTTTCCGGGGAGAA CTCCCTCC TCAA GGGGGGAC TTTCTTCTAACGAGT TERM 489 711942 - 711959 + g 70 -9.1 -3.1811 | opp_overlap 711941 711942, overlap 711941 CTTTCCGGGGAGAAC TCCCTCC TCAA GGGGGGA CTTTCTTCTAACGAG aq_1029 713570 - 713175 - | hypothetical protein TERM 490 713338 - 713368 + g 81 -9.8 -4.07568 | overlap 713359 713360 ACGAGGTTTTCCTGC CTTTCGGGGAGTAT CTG ATACTCCTCTAAGG TTTTACCGCAGAGGG TERM 491 713359 - 713383 + g 79 -4.9 -5.08255 | overlap 713338 713360 GGGAGTATCTGATAC TCCTCTAAGGT TTT ACCGCAGAGGG TTTTGTTTTCAGCGT selD 714774 - 713839 - | selenophosphate synthase TERM 492 714058 - 714068 + g 76 -2.6 -5.26119 | overlap 714046 GTTTTCTATAGCACC TTTA GGA TAAA TTTTCTTTTTAACCA TERM 493 714783 - 714801 + r 76 -8.9 -3.68351 | CCTTCAAAATTTCCT GTAGGTC ACCCG GACCTAC TTTAGCTGCTCAACC selA 716286 - 714928 - | selenocysteine synthase TERM 494 716095 - 716105 + g 73 -2.6 -5.04597 | TATATTAGGCTTCAT TAAA CTT TTTA TTTTTCTCTCTACAT TERM 495 717091 - 717073 - g 86 -3.2 -5.47218 | opp_overlap 717073 717074, overlap 717074 717082 GTGGATGCAAAAAAA GTAAAAAG AGG CTTTTTAA TTTTAAAGCCTGAAA selB 716314 - 718062 + | elongation factor SelB aq_1035 718616 - 718059 - | hypothetical protein TERM 496 718520 - 718496 - G 71 -8.6 -3.53174 | opp_overlap 718496 718493, overlap 718494 ACAGTGCGACAAACA GGGAACTCTG ATCAG CAGACTTCCC TCCTATCTTCTCTCC aq_1036 719140 - 718766 - | hypothetical protein TERM 497 719153 - 719136 - G 86 -3.5 -5.47399 | TTAATCCTAAAAAAA TTCAAAC GAAA GTTTAAA ATTCTCCAAATTTTT aq_1037 719681 - 719238 - | hypothetical protein lysR2 719732 - 720652 + | LysR family transcriptional regulator TERM 498 720770 - 720792 + F 72 -3.6 -5.14525 | overlap 720768 ATGTTCATATGCCTA TTTTTAAAAT ATT GTTTTGAAAA TTTTGTCTTTTTTTT fdoG 720865 - 723912 + | formate dehydrogenase alpha subunit fdoH 723927 - 724838 + | formate dehydrogenase beta subunit TERM 499 725018 - 725042 + G 72 -10 -2.95081 | gap 1, overlap 725014 725034 GGTGGTGAATTCGCC CGCTGGCTCCA TCCG TGG-GCCGGCG TCGTCTTTTCAATAG fdoI 724841 - 725476 + | formate dehydrogenase gamma subunit TERM 500 725510 - 725529 + G 100 -6.4 -5.72622 | gap 1 GGTGTTTGAGCAGTG GGATG-CGC TCT GCGCCGTCC TTTTTTCTTTCTCAA sodC1 725496 - 726005 + | superoxide dismutase (Cu/Zn) TERM 501 726355 - 726342 - g 79 -2.5 -5.33985 | opp_overlap 726342 TTGAAAAAAAAGAAA TATTA TCTT TAATA TCTTCTTTTTTAGAA fdhE 725987 - 726838 + | formate dehydrogenase formation protein FdhE TERM 502 726860 - 726873 + F 78 -3.9 -5.23943 | AAAGGAGAACGTTTT TAGAA TCTC TTCTA TTTCTTTTTTTAATA gcsH1 726937 - 727368 + | glycine cleavage system protein H nifS1 727480 - 728592 + | FeS cluster formation protein NifS aq_1054 728999 - 729784 + | hypothetical protein pstB 730554 - 729781 - | phosphate transport ATP binding protein TERM 503 729928 - 729949 + g 72 -5.9 -4.48792 | overlap 729925 CTGTTGCATGTTGTG GGTAACTAT AATT ATCGTTACC TTCTTTTTGAGTTCT TERM 504 730174 - 730186 + g 83 -4.1 -5.38054 | CTTTTCAACCTTTTC GTCGA GTA TTGAC TTTTTCTTTATCCCC TERM 505 731424 - 731414 - g 82 -6.8 -5.02074 | TGAGGCGGCAAAAAA GGTC GTA GACC TCGCAAAGGAAGGCG aq_1056 730704 - 731984 + | nicotinate phosphoribosyltransferase aq_1057 732470 - 731970 - | hypothetical protein TERM 506 732514 - 732495 - H 71 -7.2 -3.91716 | opp_overlap 732499, overlap 732497 TTATCCCTTAAATAA CATACCGA CCGG TCGGTATA ATAATAGTGTGGGAA TERM 507 732733 - 732707 - g 72 -3.1 -4.89054 | overlap 732729 CGCATAAAAAAATAA TTTCCCTGTTT GAAGA AAATAAGGAAA AAACTCCCGAAGAAC TERM 508 732756 - 732737 - g 79 -2.8 -5.43514 | opp_overlap 732748, overlap 732729 732738 732748 AAAATAAGGAAAAAA CTCCCGAA GAAC TTCTGGAA ATGTTCCTTGAAGTA acrR1 732523 - 733062 + | TetR/AcrR family transcriptional regulator TERM 509 734009 - 733999 - g 73 -2.6 -5.1615 | overlap 734005 TGAAGAGGGAAAAAA TAAA AGC TTTA AAGGAGCTTGAAAGT aq_1059 733053 - 734306 + | hypothetical protein TERM 510 735019 - 735009 - g 75 -4.6 -4.97666 | AAGAGAGGATAAAAA CCGC AGA GCAG AAGATAAAAGACACG aq_1060 734303 - 735427 + | hypothetical protein emrB 735424 - 736959 + | major facilitator family transporter TERM 511 736966 - 736950 - T 86 -10.1 -4.09551 | opp_overlap 736950 AAAGTTTATAAAGAA GAGGGCT TAA AGCCCCC TTTCGGCGAGGTATA gap 737984 - 736956 - | glyceraldehyde-3-phosphate dehydrogenase TERM 512 738299 - 738288 - g 78 -5.8 -5.02777 | opp_overlap 738288, overlap 738297 AGAGATAAAAAGAAA GGGA AAAG TCCC CATAGTCGTGGGAGG miaA 738025 - 738942 + | tRNA delta-2-isopentenylpyrophosphate (IPP) transferase cysS 741233 - 739746 - | cysteinyl-tRNA synthetase TERM 513 740655 - 740670 + g 89 -11.8 -3.57561 | overlap 740638 740637 CCAGGGTGAATCCCA GGCGGG TTCT CCCGCC TTTGAAGCCTTCCAG galE 742221 - 741238 - | UDP-glucose-4-epimerase aq_1070 742238 - 742948 + | hypothetical protein proA 742979 - 744310 + | gamma-glutamyl phosphate reductase TERM 514 744388 - 744374 - g 71 -4.2 -4.77567 | AGCTGTATAACAAAA GTAGAG GAA CACTAC AAGTTAAAGGAACTC aq_1072 744320 - 744754 + | hypothetical protein czcD 744788 - 745714 + | cation efflux system (czcD-like) aq_1075 745729 - 746226 + | hypothetical protein rhdA1 746226 - 747140 + | thiosulfate sulfurtransferase TERM 515 747292 - 747278 - f 78 -7.2 -4.431 | CATGTAGTGACAAAA CTTTTC CTC GAAAAG ATTAAAAGTAATGAT TERM 516 747774 - 747758 - g 72 -8.7 -3.69405 | opp_overlap 747768, overlap 747767 TACAAAAAATAGTAA GCGGAAA AGC TTCCCGC CTGGAAATGCTTTCT aq_1078 747481 - 748146 + | hypothetical protein TERM 517 749083 - 749071 - g 76 -2.7 -5.22137 | AAGTATAAAAGAAAA GCAAA AAA TTTAC TTAGATATCTTAAAA aq_1079 748376 - 749626 + | hypothetical protein aq_1080 749630 - 752287 + | hypothetical protein cysD 753917 - 752277 - | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein TERM 518 752881 - 752898 + g 71 -4.9 -4.44974 | gap 1, overlap 752870 752890 CATTCAGGTAATTTT CTTCCCTG TTT CAGG-AAG TTTTCTCGAATTTCC TERM 519 753588 - 753600 + g 80 -6.3 -4.7629 | GTGTCTGGGATCCGT TGTTC CGA GAACA TTTTTAGCTTCATAC rfbD 754007 - 755044 + | GDP-D-mannose dehydratase aq_1084 755415 - 755047 - | hypothetical protein TERM 520 755725 - 755712 - R 75 -8.1 -4.10855 | AAAAGTTTTGTAAAA GTCCG GTTC CGGAC AGAATTCTCTTTAAC aq_1085 757469 - 756060 - | hypothetical protein TERM 521 756527 - 756542 + g 75 -9 -3.66772 | overlap 756538 CATACAGAGGGTGCT CCGAGA GTCT TCTCGG TTCTTCCGAGTTTAC aq_1088 759766 - 757481 - | hypothetical protein TERM 522 758309 - 758325 + g 72 -10.1 -2.882 | overlap 758309 GAATATGGGTCTCTT GGAGGGG TGT CCCCTTC CTTTCAGTCTTTCCA TERM 523 758309 - 758326 + g 77 -9.1 -3.81137 | overlap 758309 GAATATGGGTCTCTT GGAGGGG TGTC CCCTTCC TTTCAGTCTTTCCAC TERM 524 758926 - 758940 + g 74 -2.1 -5.1861 | TCTGCATTAAAAACT CATCT TTGTT AGGTG TTTTTTCCTCGTCAA hylA 761007 - 759811 - | hemolysin TERM 525 761493 - 761479 - g 71 -8.6 -3.49076 | AAAATTGAGAAGGAA GTAGAG AGA CTCTAC CTTGAAAAGTACCTT aq_1093 761152 - 762429 + | hypothetical protein abcT4 763597 - 762407 - | ABC transporter TERM 526 762527 - 762541 + g 82 -10 -3.89346 | GTGGTAACACTCCTG GGCATG ATC CATGCC TTTGTGGAGTGCCAC abcT3 764364 - 763594 - | ABC transporter TERM 527 764497 - 764511 + r 71 -6.4 -4.24948 | opp_overlap 764495, overlap 764504 TTGATTAAATCCACA GCTTCT TTC GGAAGC TTTTCGGTGTCGTAC mtfA 766337 - 764571 - | mannosyltransferase A TERM 528 766472 - 766488 + H 77 -5.1 -4.99568 | opp_overlap 766473, overlap 766473 GTATTCTTTTAATTT ATCCCTT AAT AAGGGAA TTTTATTTGCTGTTG TERM 529 766473 - 766487 + H 72 -8.6 -3.58114 | opp_overlap 766473, overlap 766472 TATTCTTTTAATTTA TCCCTT AAT AAGGGA ATTTTATTTGCTGTT abcT5 766601 - 768295 + | ABC transporter fabH 769221 - 768292 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 530 768343 - 768324 - G 76 -10.7 -3.05384 | overlap 768326 CGGCTCCCCACGTAA GACCGCC CCCCAT GGCGGTC ATGAGGATTAGATCT TERM 531 768680 - 768707 + g 71 -9.2 -3.30651 | gap 1, overlap 768679 TCCAGAGAGCCTTCG GCGTACATCCTCG TTG CGAGAATGT-CGC TCTTGTCCTCTGACC plsX 770235 - 769222 - | putative glycerol-3-phosphate acyltransferase PlsX TERM 532 769708 - 769720 + g 83 -5.5 -5.24129 | TCCGATACTAAGTAT CCCGA CCC TTGGG TTTTTTATCCCGAGA rpmF 770426 - 770235 - | ribosomal protein L32 aq_1103 770950 - 770426 - | hypothetical protein TERM 533 771053 - 771041 - g 70 -5.5 -4.37092 | opp_overlap 771041 771045, overlap 771042 771052 ACTTTTTTCACAAAA CCTCC GAA GGAGA GGGTCTTCGTCCTTC aq_1104 770996 - 772048 + | hypothetical protein purQ 772057 - 772740 + | phosphoribosyl formylglycinamidine synthase I aq_1106 772733 - 773836 + | hypothetical protein moaD 773849 - 774085 + | molybdopterin converting factor, small subunit gcsH4 774106 - 774621 + | glycine cleavage system protein H TERM 534 774664 - 774654 - g 80 -5.4 -5.12172 | overlap 774660 GAGGAAGAAACAAAA GAGA TAC TCTC AAAACTCGGTCTAGA TERM 535 775014 - 775033 + G 71 -7.8 -3.73042 | opp_overlap 774996, overlap 775012 TCCATGTACGACGGG GCTTCAGC CCTT GCGGAAGC TGTTTTAATGGCAAG gcsP2 774618 - 775937 + | glycine dehydrogenase subunit 1 aq_1110 776378 - 775923 - | hypothetical protein aq_1111 776595 - 777260 + | hypothetical protein TERM 536 778116 - 778130 + G 70 -10 -2.57014 | opp_overlap 778114, overlap 778115 778113 TCCCGTGGAAAACGT GCCCTT CGT AAGGGC GTATTCTCCTAAGTT aq_1113 777271 - 778230 + | hypothetical protein TERM 537 778835 - 778822 - g 74 -6.7 -4.43879 | opp_overlap 778823, overlap 778816 778823 ACGACGGAAGGAAAA TTCCC TTAA GGGAA GGGATTTACAGGTCG hksP1 778227 - 780167 + | histidine kinase sensor protein TERM 538 780220 - 780202 - g 74 -10.4 -3.16564 | GGTTTACTCGAGGAA TACCTTTC CAT GAAAGGTA TAAAAGTTGAGAGTG TERM 539 780808 - 780821 + G 86 -3.1 -5.47399 | overlap 780809 TTCACGGGAGCAGTA TCTTC CAAG GAAGG TTTTTTTGAGCTTGC ntrC1 780148 - 781467 + | NtrC family transcriptional regulator TERM 540 781484 - 781504 + F 79 -11.3 -2.58714 | opp_overlap 781468 781484 TGTCAGACTGGCAAA TTTTTGCCA AAA TGGCAAAAA TCCCTTCCTCTAACC TERM 541 781504 - 781484 - f 88 -11.3 -3.59262 | opp_overlap 781484, overlap 781468 TGTCAGACTGGCAAA TTTTTGCCA AAA TGGCAAAAA TCCCTTCCTCTAACC TERM 542 781725 - 781689 - g 77 -2.2 -5.46657 | gap 1, opp_overlap 781694 781696, overlap 781691 GATCTCAAGAAAAAA GCGGAGA-TCGACGTGG TTTA CCACGCGGACTTTCCTC AGGAAAAGCGTTTCA aq_1119 781521 - 782078 + | hypothetical protein aq_1120 782351 - 782854 + | hypothetical protein TERM 543 782970 - 782990 + G 75 -8.3 -3.83026 | opp_overlap 782958 782965 782963 782970, overlap 782966 ATAGGAAAGAGGAAG GGAATAACC CTT GGTTTTTCC TTTGCTATGCAAAAC aq_1121 782895 - 783701 + | hypothetical protein acrD2 786834 - 783682 - | AcrB/AcrD/AcrF family cation efflux protein TERM 544 783939 - 783955 + g 74 -5.8 -4.60797 | TTTTACTCCTTATTT CGCTCT CTTTC AGGGCG TTTTGTATGTAAACC ctrA3 788835 - 786841 - | cation transporter E1-E2 family ATPase TERM 545 787747 - 787757 + g 74 -6.8 -4.3739 | TAACTTACCTTCTGT CAGG GTA CCTG TTTTGTCAAAAACTA aq_1127 789205 - 788837 - | hypothetical protein TERM 546 789083 - 789098 + g 77 -6.8 -4.53349 | GGGTAGTAGTACATG GGCGGA GACA TCTGCC TTTCTTTCGTCATTC aq_1129 789579 - 789211 - | hypothetical protein TERM 547 789267 - 789288 + g 73 -4.3 -4.74706 | CGCTGAGAACACCGT GCGGGGAGT AAAC ACCTCTCGC TTTTTCACTCTTCAA sufI 791176 - 789593 - | periplasmic cell division protein (SufI) czcB1 792523 - 791189 - | cation efflux system (czcB-like) aq_1133 793698 - 792520 - | hypothetical protein TERM 548 792697 - 792707 + g 74 -5.4 -4.59853 | TTTCTTCTTTATTTC CTCT TCC AGAG TTTTTAACGCCTTAA TERM 549 793132 - 793144 + g 71 -4.1 -4.8143 | CTTTATCTTTTCCCT TAACG CCT CGTTG TTTTTAAGTTCTTCC TERM 550 793314 - 793330 + g 88 -3.7 -5.49234 | overlap 793315 TGTAGAGAAAATCGT AGTAAAG TAT CTTTACG TTTTTTATTAGCTCT TERM 551 793315 - 793329 + g 70 -7.2 -3.87914 | overlap 793314 GTAGAGAAAATCGTA GTAAAG TAT CTTTAC GTTTTTTATTAGCTC proB 794837 - 793767 - | gamma-glutamyl kinase aq_1137 794867 - 795739 + | hypothetical protein rpiB 795750 - 796214 + | ribose 5-phosphate isomerase B TERM 552 796444 - 796428 - gf 71 -5.1 -4.58395 | opp_overlap 796437, overlap 796429 TCCACTTCTTAAAAA CGAACCC TAC AGGTTCA AACCCGCTTTAAAGG ftsW 796183 - 797529 + | cell division protein FtsW argG 797533 - 798738 + | argininosuccinate synthase TERM 553 798825 - 798805 - g 86 -12.5 -3.20164 | overlap 798800 GTAGATGGAACGCAA CGTGCGGGG TTT CCCTGCACG CGGAAATGATAGGGA TERM 554 799355 - 799319 - g 70 -7.3 -3.86524 | opp_overlap 799319 799322 AGATGGTGTTATAAA GTTCTTCTCCTTCGG AAGACAG CCAAAGGAGGAGTAC TGTCCTTATATAGAA TERM 555 799713 - 799698 - g 70 -7.6 -3.9243 | GAACTCGTTAAAGAA CTGAAG AAGG CTTCAG CAGATGAAGAATACA aq_1141 798771 - 799841 + | hypothetical protein aq_1142 800855 - 799806 - | hypothetical protein dapA 800897 - 801781 + | dihydrodipicolinate synthase pabB 802810 - 801764 - | p-aminobenzoate synthetase dhaT 803970 - 802807 - | 1,3 propanediol dehydrogenase TERM 556 802834 - 802848 + g 72 -8.6 -3.68569 | TTCGTAAGCCCTTTC GTAGAG TTC CTCTAC TTCTTCCATACCTAC TERM 557 803319 - 803332 + g 77 -5.3 -4.98103 | CCTTTACCGAGTACT CTTCA GCTA TGAAG TTTTCTCTTTTATTC aq_1148 805384 - 803996 - | hypothetical protein aq_1151 808229 - 805785 - | hypothetical protein TERM 558 807559 - 807575 + g 80 -8.7 -4.19735 | overlap 807538 807557 AAGTAAACGACTTCG GGAAGTG TTC CGCTTCC TTTCATTTTACACAG lysC 809525 - 808278 - | aspartokinase TERM 559 808931 - 808945 + g 80 -5.8 -5.11389 | ATGCGAGCTCCAGCA TTTCTT CAT AAGAAA TTTTCTTTATCTTCT TERM 560 809427 - 809441 + g 91 -10 -4.77983 | opp_overlap 809418, overlap 809418 AACAACGGGTTTGTA GCCCTT TTC AAGGGC TTTTATTACTCTCTT metK 809561 - 810691 + | S-adenosylmethionine synthetase hisS2 811831 - 810680 - | histidyl-tRNA synthetase TERM 561 811169 - 811183 + g 80 -6.4 -4.855 | CTCAAGCAGTTTCCC GAGCTC TAG GAGTTC TTCTTTTTCTTTTTC TERM 562 811537 - 811549 + g 70 -5.5 -4.30014 | opp_overlap 811537 TGCCGAAGTAGTAAA CTCTC TCG GGGAG TTTTACGTTCCTGAG hoxX 813516 - 811828 - | hydrogenase regulation HoxX TERM 563 811969 - 811981 + g 75 -4.8 -4.82128 | CATCTTTTCGAGTTC GTGC TCCCT GCAC TTTTGTATTTCCTCG TERM 564 812008 - 812020 + g 100 -4.1 -5.71295 | CTCGAGCCACTCCCC GGAAG TCC TTTCC TTTTTCTTTTTCTCT TERM 565 812443 - 812453 + g 70 -6.8 -4.07786 | overlap 812446 GTTCCTCCAGGACTC GTCC GCG GGAC TTTCTGCGTTTTCTA TERM 566 812446 - 812461 + g 71 -4.6 -4.62051 | overlap 812443 CCTCCAGGACTCGTC CGCGGG ACTT TCTGCG TTTTCTATGGTGTTT TERM 567 812743 - 812761 + g 81 -3.1 -5.38047 | GAGAACTCTGGCGGA GGGGAGT TTTAT ACTTTCC TTTTTTCTCTCCCTC TERM 568 812902 - 812892 - G 70 -6.8 -4.09243 | overlap 812893 GATACGCGTTGAAAA GGAG AAC CTCC TTCCCCAGAACTTTT TERM 569 812947 - 812923 - G 76 -10.7 -3.04799 | opp_overlap 812920 812918 812941 812946 CAGAACTTTTGAAGA CGCTCCGGGTT GAG AATCCGAAGCG TAAACTTTTCTGAGA hypD 814671 - 813529 - | hydrogenase expression/formation protein HypD TERM 570 814156 - 814140 - G 80 -10.9 -3.28924 | opp_overlap 814141 814145 814152, overlap 814152 CAGCGGGCGTTATAA CGTGGTT GGA AACCACG AAGAGGTTTTTAATC TERM 571 814579 - 814590 + g 100 -3 -5.9362 | TACCGTTCTTCCTAT CTTT TCAG AAAG TTTTTTTATCTTTTC topG1 814948 - 818481 + | reverse gyrase TERM 572 818831 - 818867 + G 70 -7.3 -3.95725 | opp_overlap 818816 818822, overlap 818832 GCGAAACACGTTTCC GCGTAGGATTTTTCCCT TCA AGGGAAGAGGCTTACGA TTCTTCTTCAAGATT TERM 573 818832 - 818866 + G 75 -10.8 -2.96712 | opp_overlap 818822, overlap 818831 CGAAACACGTTTCCG CGTAGGATTTTTCCCT TCA AGGGAAGAGGCTTACG ATTCTTCTTCAAGAT aq_1163 818518 - 818895 + | hypothetical protein aq_1166 819009 - 819743 + | hypothetical protein forA2 819763 - 820932 + | ferredoxin oxidoreductase alpha subunit forB2 820956 - 821825 + | ferredoxin oxidoreductase beta subunit TERM 574 821855 - 821885 + G 78 -10.4 -3.61715 | overlap 821856 AGAATAGCCGGTGTT GGTGGGCAGGGG GTCGTTA CCTCTGCCCACA TTATTGGAAACGCTA TERM 575 821856 - 821884 + G 86 -13.9 -2.76815 | overlap 821855 GAATAGCCGGTGTTG GTGGGCAGGGG GTCGTTA CCTCTGCCCAC ATTATTGGAAACGCT TERM 576 822331 - 822345 + G 75 -8.6 -3.74693 | opp_overlap 822330 822331 GGCTTTAATTGAAAG GTTCCT AGG AGGAAC TTTCGTAGCATCAGG forG2 821822 - 822514 + | ferredoxin oxidoreductase gamma subunit fdx2 822528 - 822764 + | ferredoxin TERM 577 824019 - 823992 - g 76 -7.8 -4.17048 | gap 1, overlap 823995 CGCGGTTCAAAACAA CGAGGTTTACGTC CTT GAGGTAAACC-CG CGGGCTTCTAGAACG carB1 823159 - 824772 + | carbamoyl-phosphate synthase large subunit aq_1173 824888 - 825337 + | hypothetical protein TERM 578 825608 - 825622 + GF 82 -8.6 -4.27519 | opp_overlap 825607 AGTACTTAGGAAAGC CCTTTC TGG GAAAGG TTTATCTTCTAAGAT rlpA2 825286 - 825966 + | rare lipoprotein A TERM 579 826602 - 826590 - g 79 -4.1 -5.1963 | GGGAAGGAAGAAAAA CACCA TTC TGGTA GCTTCGGAGAGCTGT TERM 580 826957 - 826947 - g 74 -6.8 -4.30719 | CGGGCTTATAAGAAA CCAC TAC GTGG GAAGGAGCTTTATAG purF 825994 - 827391 + | amidophosphoribosyltransferase aq_1176 827458 - 827793 + | hypothetical protein murG 828816 - 827782 - | phospho-N-acetylmuramoyl-pentapeptide-transferase - TERM 581 828315 - 828327 + g 100 -4.1 -5.72053 | ATCTCTTCTTTACTT CTTTC TTC GGAAG TTTTTTCTTTAGTTC TERM 582 828452 - 828463 + g 70 -5.8 -4.3129 | ATTTTGTTAGTTTTA CTCG GAAT CGAG TTTTGCTCGTGAATA purE 828841 - 829344 + | phosphoribosylaminoimidazole carboxylase TERM 583 830335 - 830311 - g 73 -10 -3.09117 | overlap 830316 830326 GTACAAATTAAAGGA CGGAAGGAGG ATATA CCTCCTTGCG GAAGGGAGGCTCGTG sahH 829334 - 830590 + | S-adenosyl-L-homocysteine hydrolase TERM 584 830589 - 830603 + T 93 -11.4 -4.14615 | opp_overlap 830580 GGGAAATGGGCACCT GAGGGC TCA GCCCTC TTTTAACCACTTTTT fliF 832064 - 830595 - | flagellar M-ring protein TERM 585 831505 - 831527 + g 73 -6.3 -4.35524 | gap 1, overlap 831506 ATAGCCTTTACCTGC TCGGGA-GTG AGTT CACATCCCGG TTTTAACTTTAAAAA TERM 586 831562 - 831545 - G 100 -6.9 -5.47399 | opp_overlap 831546 831546, overlap 831546 TTAACTTTAAAAAAA CGGAGGC CTTT GCCTCCT CCTCTTCCCTTATAA TERM 587 831546 - 831561 + g 71 -10.4 -2.78505 | opp_overlap 831545 831546, overlap 831546 TAACTTTAAAAAAAC GGAGGC CTTT GCCTCC TCCTCTTCCCTTATA TERM 588 831561 - 831546 - G 82 -10.4 -3.87355 | opp_overlap 831546 831546, overlap 831545 TAACTTTAAAAAAAC GGAGGC CTTT GCCTCC TCCTCTTCCCTTATA fliE 832347 - 832066 - | flagellar hook-basal body protein flgC 832742 - 832338 - | flagellar biosynthesis FlgC flgB 833113 - 832739 - | flagellar basal body rod protein FlgB aq_1185 834901 - 833114 - | hypothetical protein aq_1186 836057 - 834837 - | hypothetical protein TERM 589 835294 - 835315 + gr 77 -2.3 -5.4505 | overlap 835291 835288 835295 GTTTTAGACGTTTCT CCTTTAGAG ACTT CTTTAAAGA TTTTTTCTTGAACCG TERM 590 835564 - 835574 + gr 100 -5.4 -5.61824 | opp_overlap 835564, overlap 835567 TGTATTTCTTCAAAA GCTT CTA AAGC TTTTTTTAGATTTTG aq_1187 836575 - 836072 - | hypothetical protein aq_1188 836624 - 837091 + | hypothetical protein TERM 591 837864 - 837877 + G 74 -8.1 -4.11484 | TCCACAGGAGAAGTT CTCGC CCTT GCGAG TTTTCCCAACTTCAA TERM 592 838041 - 838053 + G 77 -3.4 -5.24531 | GCAAAGATAAGGAGT CCTT GGGAA AAGG TTTTTTGTCCCGGAT TERM 593 838700 - 838689 - g 71 -4.4 -4.66388 | overlap 838681 AAAATGAGAAAGAAA CTTC CCTG GAAG TACAGAAACCACGCG pbpA1 837078 - 838865 + | penicillin binding protein 2 aq_1191 839845 - 838862 - | hypothetical protein fdx3 839920 - 840159 + | ferredoxin aq_1192 840172 - 840741 + | hypothetical protein aq_1194 840741 - 841283 + | hypothetical protein forA1 841295 - 842509 + | ferredoxin oxidoreductase alpha subunit TERM 594 842618 - 842599 - g 86 -7.8 -4.74103 | GGGGCAATCCAAAAA GGGGAGTT ATGG ACCTCCCC TACGCGAAGGAGCTT forB1 842499 - 843359 + | ferredoxin oxidoreductase beta subunit forG1 843356 - 844081 + | ferredoxin oxidoreductase gamma subunit TERM 595 844102 - 844114 + TF 70 -3.5 -4.88067 | TTTTTCCTTTCCTTT TAAAA ATT TTTTA TTTTTCTAGATGAAT aq_1201 844822 - 844484 - | hypothetical protein lysU 844743 - 846536 + | lysyl-tRNA synthetase TERM 596 846551 - 846518 - TR 93 -7.3 -5.4477 | opp_overlap 846537, overlap 846524 AAAGCCGGAAAAAAA GAAGAAGGAAGCCCC TTAA GGGGCTACCCAGTTC CCGTTTTCTATTAAT TERM 597 846545 - 846524 - TR 93 -11.5 -4.48073 | opp_overlap 846537, overlap 846518 GGAAAAAAAGAAGAA GGAAGCCCC TTAA GGGGCTACC CAGTTCCCGTTTTCT thiC 847906 - 846533 - | thiamine biosynthesis protein ThiC TERM 598 847091 - 847115 + g 73 -6.3 -4.37886 | opp_overlap 847092, overlap 847092 GGGTCCTTCCACCAT AGCCTGGACGT CGT GCTTCCAGGCC TTTTCTACGAGCTCA TERM 599 847092 - 847114 + g 72 -9.8 -3.2241 | opp_overlap 847092, overlap 847091 GGTCCTTCCACCATA GCCTGGACGT CGT GCTTCCAGGC CTTTTCTACGAGCTC accA 847969 - 848940 + | acetyl-CoA carboxylase alpha subunit furR1 849358 - 848924 - | FUR family transcriptional regulator TERM 600 849395 - 849375 - R 75 -2.6 -5.29742 | overlap 849383 ACATAAAAAAATAAA TTGAGAAG GAAAA CTTTTCAA GAACATTTATCAGAT lysA 850667 - 849405 - | diaminopimelate decarboxylase TERM 601 850303 - 850325 + g 75 -4.8 -4.77986 | overlap 850308 AACATCAAGATTTCG GAGTCCACAG CGT CTGTGAGTTC TTTTTCCGTCTTTCC aq_1210 851423 - 850689 - | hypothetical protein TERM 602 850947 - 850965 + g 75 -8.8 -3.75535 | opp_overlap 850946, overlap 850948 850959 ACAAGCCTGAAGTAG CGTAGCCC CGA GGGCTACC TTTGCCTCTATCTCC TERM 603 850948 - 850964 + g 82 -12.3 -2.84839 | opp_overlap 850946, overlap 850947 850959 CAAGCCTGAAGTAGC GTAGCCC CGA GGGCTAC CTTTGCCTCTATCTC TERM 604 851943 - 851920 - g 87 -5.2 -5.38839 | overlap 851939 GAGATAAAAACAAAA GGGGAGTGCA GGTA CACAATCCCC TACAGAGCGGGATAC aq_1211 851461 - 852072 + | hypothetical protein TERM 605 852858 - 852848 - g 72 -6.8 -4.27316 | GTCCTCAAGGGAAAA CCTC GGA GAGG CTATCAGTGAGGAAC TERM 606 853395 - 853411 + G 72 -9.5 -3.21912 | GAGACTTACGACCCC GCCTTTA AGA TAAAGGC TTACTGGATTACGGA flhA 852069 - 854105 + | flagellar export protein flhF 854095 - 855216 + | flagellar biosynthesis FlhF minD1 855179 - 856015 + | septum site-determining protein MinD fliA 856012 - 856722 + | RNA polymerase sigma factor FliA aq_1219 857266 - 856709 - | hypothetical protein aq_1220 858804 - 857305 - | hypothetical protein TERM 607 857950 - 857972 + g 100 -5.6 -5.63517 | overlap 857955 AAAGGAAAACCAGAC GAGGGGAA AAGAGAG TTCCCTTC TTTTTTCTTTCAGAG TERM 608 858343 - 858333 - G 76 -4 -5.16572 | opp_overlap 858333 AGGCAAGCCAAAAAA GAAA TTC TTTC TTTCTCGTGAAGTAC TERM 609 859030 - 859049 + H 70 -3.6 -4.84492 | TATATTAATTGAAGC CTTACCAT GTTC ATGATAAG TTTTATTGTAATTCA gltX 859084 - 860505 + | glutamyl-tRNA synthetase TERM 610 860657 - 860645 - g 76 -6.2 -4.52589 | opp_overlap 860645 GTGCGGTATAGAAAA GCCC GATGA GGGC TTTATGAAGTGTTGC abcT1 860502 - 861191 + | ABC transporter aq_1223 861895 - 861188 - | hypothetical protein TERM 611 861584 - 861595 + g 73 -4.4 -4.78661 | overlap 861591 GGATTTTTTTAGTAT CTTG TCTT CAAG TTTTGATTTTTCCCT TERM 612 862068 - 862099 + G 89 -14.4 -2.93073 | opp_overlap 862070, overlap 862064 AGTAGCGGTGGGAAT GAGCGGTGGCGTTG ACAG CAGCGTCACCGCAC TCCTTCTTAAAGAAC TERM 613 862097 - 862070 - g 77 -11.2 -2.71144 | opp_overlap 862068 862064 TAGCGGTGGGAATGA GCGGTGGCGTTG ACAG CAGCGTCACCGC ACTCCTTCTTAAAGA aq_1224 862048 - 863118 + | hypothetical protein TERM 614 863576 - 863589 + G 74 -3.7 -4.89393 | opp_overlap 863576 TAAGCCCGGAAGCAA GGACC TGGT GGACC TTTTTCTGAGATTTC TERM 615 863624 - 863612 - g 73 -4.8 -4.66987 | overlap 863613 GAGATTTCAACAAAA GGGA GAGGT TCCC CTAGCCAACGATACC TERM 616 863763 - 863732 - g 80 -6.7 -4.86731 | TTCCTTTAAAGAAAA TCACCCTTACGTC GGAGAA GACATAAAGGTAA TGGGAGTGAGGATAA aq_1226 863160 - 864362 + | S-adenosylmethionine synthetase TERM 617 864455 - 864470 + G 70 -7.5 -4.00443 | ACCTTCGTCGTAGTT GCCCG CTTTCT CGGGC TCTTTTTACTGCTAC mffT2 864401 - 865579 + | major facilitator transporter aq_1230 866352 - 865609 - | hypothetical protein dmsC 867727 - 866714 - | DMSO reductase chain C TERM 618 866978 - 866995 + g 76 -7.7 -4.21194 | CAGAGGTATGAACGT GGGAAGC ATTT GCTTTCC TTTTGCGTAATAAAA dmsB1 868507 - 867743 - | DMSO reductase chain B dmsA 871474 - 868520 - | DMSO reductase chain A aq_1236 871498 - 872904 + | hypothetical protein cysG 873066 - 873629 + | siroheme synthase aq_1238 874163 - 873615 - | hypothetical protein aq_1239 874528 - 874193 - | hypothetical protein adh2 875253 - 874528 - | alcohol dehydrogenase TERM 619 875241 - 875252 + g 79 -3 -5.40464 | AGCCTATTCCCGTTA TGAA CAAC TTCA TTTTTCTTTCTCCTC aq_1241 875702 - 875250 - | hypothetical protein mutS2 877987 - 875699 - | DNA mismatch repair protein MutS TERM 620 877235 - 877253 + g 77 -7.4 -4.4078 | ATCCCCTATGTATTC GGTTATCC TCT GGAGAACC TTTCTTACTTCTTCT aq_1244 878617 - 877994 - | hypothetical protein TERM 621 878477 - 878454 - G 71 -2.4 -5.14965 | overlap 878455 AGTGCGAGTAAAAAA GCACCAGAAA GAGT TTTATGGTGA AAGTAAAAGTAAGCG ilvC 879615 - 878614 - | ketol-acid reductoisomerase aq_1247 879682 - 880335 + | hypothetical protein TERM 622 880613 - 880593 - gf 71 -3.9 -4.75308 | opp_overlap 880576 880593, overlap 880576 880573 880595 AGTAAGAGGGAAAAA CTTTACTCC TTA GGTGTAAGG GTAAGGTTAATAGGA aq_1248 880332 - 881027 + | hypothetical protein cds 880975 - 881754 + | phosphatidate cytidylyltransferase aq_1250 881726 - 882241 + | hypothetical protein aq_1253 883122 - 882667 - | hypothetical protein aq_1254 883164 - 883472 + | hypothetical protein feoB 885538 - 883469 - | ferrous iron transport protein B TERM 623 883550 - 883528 - G 77 -9.9 -3.65426 | gap 1, opp_overlap 883523, overlap 883531 GTACAAAGCTGTAAA CGAGGAAGGC CGTT GCCTTCC-CG TACCCTATTTCTCTG TERM 624 883548 - 883531 - G 78 -11.3 -2.93381 | opp_overlap 883523, overlap 883528 CAAAGCTGTAAACGA GGAAGGC CGTT GCCTTCC CGTACCCTATTTCTC TERM 625 884207 - 884180 - G 85 -7.8 -4.72272 | gap 1 TTTTCTCATTAAAAA GGCTGTAAGCAGT GCA ACTGCT-ACACCC AGAAGGTACAGACCC aq_1256 886477 - 885548 - | hypothetical protein TERM 626 888070 - 888060 - g 74 -3.2 -5.04222 | CAAGGAAAGGAAAAA GGAA GAA CTCC AGAAGGTTCTCTACG metG 886771 - 888264 + | methionyl-tRNA synthetase alpha subunit TERM 627 888297 - 888312 + G 87 -6.2 -5.1925 | opp_overlap 888294 888293 CTCCTCATAAACTTC CTCTTT GCGG AAAGAG TTTTTTACCTTATGG TERM 628 889040 - 889021 - g 76 -5.8 -4.74917 | overlap 889016 AGGAAAGAGAGAAAA TTCTGAAA AACT TTCCAGAA GCCGCTGTTCTCATT aq_1258 888261 - 889127 + | hypothetical protein aq_1259 889204 - 890514 + | hypothetical protein TERM 629 890530 - 890518 - f 73 -5.5 -4.58395 | TGGATGTTCTAAAAA CCCCT GCG AGGAG GAGCGTGGGGAGGTG aq_1262 890580 - 892274 + | hypothetical protein aq_1263 892238 - 892792 + | hypothetical protein aq_1264 892789 - 893709 + | hypothetical protein cstA 895354 - 893687 - | carbon starvation protein A TERM 630 894997 - 895018 + g 80 -8.7 -4.24786 | opp_overlap 895002, overlap 894989 CTGCGTATTCACCGA GGATAGTCC CGAT GGACTTTCC TTTATGTCTTATAGA aq_1267 895686 - 896408 + | hypothetical protein hvsT 896480 - 898297 + | high affinity sulfate transporter TERM 631 898993 - 899014 + G 74 -7.3 -4.26188 | opp_overlap 898992 ATAAGGAGATAAAGC CCGGATTTT ACGA AAATTCCGG TTTTACGTGTATAAG aq_1270 898446 - 899048 + | hypothetical protein mpp 899259 - 900560 + | processing protease aq_1272 900899 - 900570 - | hypothetical protein aq_1273 901807 - 900887 - | hypothetical protein cafA 903132 - 901756 - | cytoplasmic axial filament protein TERM 632 903343 - 903329 - gR 71 -5 -4.44974 | overlap 903330 GGAAAGCTGATAAAA CTCCTT GAA AAGGAA GAGGCGTATTCCCTC TERM 633 903602 - 903612 + Gr 77 -8.2 -4.19238 | AAAACCCTTGAGGAG GCCC TGT GGGC TTTTGAGATTGCAAA TERM 634 903846 - 903857 + Gr 71 -7.2 -3.90048 | opp_overlap 903845 903855, overlap 903845 TTATGAAGGAAGTAG GGGC AAAA GCCC TCTTTTTGGAGGAGG aq_1276 903044 - 903961 + | hypothetical protein aq_1277 904518 - 903946 - | hypothetical protein hemA 904557 - 905777 + | glutamyl tRNA reductase (delta-aminolevulinate synthase) murA 906163 - 907440 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase hspC 907924 - 907490 - | small heat shock protein (class I) pilC2 909169 - 907985 - | fimbrial assembly protein PilC2 TERM 635 908240 - 908254 + g 73 -4.3 -4.88067 | CCTTGAGAGGAGTGC GGAAA AACTC TTTCC TTTTTCTACCTCGCT TERM 636 908825 - 908845 + g 82 -6.7 -4.88736 | overlap 908843 TCCTGTTCTCTTGAA GGCTTCCGC GAG GCTGTAGCC TTTTTCTACGTACTC aq_1286 910011 - 909166 - | hypothetical protein TERM 637 909344 - 909363 + g 80 -5.8 -5.07011 | opp_overlap 909344, overlap 909345 909358 909358 TCCACCATCAAAAGG TCTTTCAA TTGT TTGAAAGG TTTTTCCTTTCTGTA aq_1287 910667 - 910008 - | hypothetical protein TERM 638 910038 - 910050 + gr 73 -7.7 -3.96148 | overlap 910022 910032 TCTGAGGTTGTTCAG GGTTC CTT GAACC TTTATCCTCACACCG gspD 912510 - 910633 - | general secretion pathway protein D TERM 639 911798 - 911774 - GR 74 -4.9 -4.7078 | GGAATTATGTAAAAA CTCCTTTCCGC TTC GAGGGAAGAAG GGTCATCCAGATCGG TERM 640 912506 - 912492 - GR 70 -2.8 -4.95806 | AAAGGATGAGAAAAA GGAGTA TTA TAATCC TCATACCACGTCTCC purA 914194 - 912896 - | adenylosuccinate synthetase TERM 641 913053 - 913065 + g 73 -4.8 -4.68384 | TCACTGACGTCTTTA GCAC CTTTT GTGC TTTTCTTCCATCCCT aq_1292 914759 - 914223 - | putative NTPase TERM 642 915459 - 915435 - g 71 -9.3 -3.28447 | overlap 915433 TTATGCAGTACAACA GGGACGAAAAC GGC GTTCTCACCCC CCTTCCTCACCCCAA TERM 643 916686 - 916674 - g 74 -5.5 -4.72473 | TGAACGAAAAAATAA GGGAA AAC CTCCC CGTGAATGTAATGGA alaS 914828 - 917431 + | alanyl-tRNA synthetase aq_1295 917436 - 917906 + | hypothetical protein TERM 644 918144 - 918119 - g 79 -9.7 -3.85698 | GCTTGCTCTGATAAA GGATGAGGACA TACC CGTCCTCGTCC TCAGCAAGCTGGGTG TERM 645 918195 - 918182 - g 71 -5.2 -4.49353 | TGAGAAGATAAGAAA GGCC ATAATG GGCC AAATAACTAAGGGAA clpC 918003 - 920435 + | ATP-dependent Clp protease TERM 646 922768 - 922751 - g 76 -4.1 -5.10767 | overlap 922752 CATTCAAGACAAAAA CCGTACC GGGT GATACGA ACCGCTCAAGGATAC omp 920473 - 922809 + | outer membrane protein TERM 647 922844 - 922828 - T 89 -10.1 -4.22231 | AAGTAAAAAAGAGAA GGGCGAA TTA CTCGCCC AAAACTCTTACGTTT cspC 923047 - 922835 - | cold shock protein TERM 648 922984 - 922955 - G 75 -9.3 -3.59262 | CTGGATATCGGTAAA GTGGACAAAAACG TCTG CGTTTGTGTCCTC ACGGGTAATGAACCC hisA 923867 - 923151 - | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase pyrDB 924619 - 923864 - | dihydroorotate dehydrogenase electron transfer subunit TERM 649 924326 - 924348 + g 73 -4.9 -4.64766 | gap 1, opp_overlap 924326 924347 CTCGTAGGAAAAAAG CCTTT-TGCC AAGT GGCAGGAAGG TTTTTAACCTCTCGC TERM 650 925585 - 925572 - g 70 -9.5 -2.9176 | AACCTCACGGACATA GGCGG TAAC CCGCC CGCCGAAAAGATGTA sucC1 924687 - 925997 + | succinyl-CoA ligase beta subunit tgt 926031 - 927167 + | queuine tRNA-ribosyltransferase thrB 928044 - 927151 - | homoserine kinase nuoA2 928429 - 928785 + | NADH dehydrogenase I chain A nuoB 928798 - 929337 + | NADH dehydrogenase I chain B nuoD2 929347 - 931107 + | NADH dehydrogenase I chain D nuoH1 931120 - 932130 + | NADH dehydrogenase I chain H nuoI1 932142 - 932747 + | NADH dehydrogenase I chain I nuoJ1 932735 - 933223 + | NADH dehydrogenase I chain J TERM 651 933405 - 933418 + G 100 -6.7 -5.55769 | TCGGAAGAGTTGATG GGCAA ATTT TTGCC TTTTTTGTTCTGACG nuoK1 933233 - 933535 + | NADH dehydrogenase I chain K TERM 652 934043 - 934021 - g 100 -7 -6.13503 | opp_overlap 934025 934029 934030, overlap 934025 CACGAACAAAAAAAA GCTACAAAAG CTT CCTTTGAAGC CTTCGTTATGAACAG TERM 653 934203 - 934184 - g 85 -12.2 -3.28712 | opp_overlap 934172 TTGGCGTTGCCACAA TGCTCCTC TTTG GAGGAGCA GTCGGAAAGTCGGGA nuoL1 933532 - 935400 + | NADH dehydrogenase I chain L nuoM1 935400 - 936875 + | NADH dehydrogenase I chain M nuoN1 936880 - 938274 + | NADH dehydrogenase I chain N aq_1323 938284 - 938925 + | hypothetical protein aq_1324 939500 - 938922 - | hypothetical protein mobB 939925 - 939497 - | molybdopterin-guainine dinucleotide biosynthesis protein B aq_1327 939955 - 940638 + | hypothetical protein aq_1328 942929 - 940635 - | hypothetical protein TERM 654 943277 - 943265 - g 76 -4.1 -5.07567 | GGAGAGTGCAAAAAA GACTT TGG AAGCC CTTAACCCAGACGTT moeB 942990 - 943805 + | molybdopterin biosynthesis protein MoeB TERM 655 944371 - 944382 + G 74 -5.8 -4.7153 | GGGTTATAGTCTTAA CTCC CGTG GGAG TTTTTGCCCTTGTTT TERM 656 944829 - 944839 + G 74 -8.2 -4.02108 | GGTGCTGCGGCAATT CCCG GAG CGGG TTTAGTTCTCCTGAC gltP 943806 - 945002 + | proton/sodium-glutamate symport protein TERM 657 945096 - 945084 - g 95 -3.3 -5.67063 | overlap 945073 945071 945085 CGGAGGAGAAAAAAA CTCCC CAA GCGAG GAAAATACAGGTATC czcB2 945014 - 946060 + | cation efflux system (czcB-like) aq_1332 946057 - 947304 + | hypothetical protein aq_1333 948198 - 947293 - | hypothetical protein TERM 658 947525 - 947508 - G 70 -2.6 -5.00616 | TTTTCTTGTAAAAAA CGGAGG TTGCGT CTTCCG AGAAGGGACACTCTT pyrG 950069 - 948474 - | CTP synthetase nse 950129 - 951094 + | nucleotide sugar epimerase aq_1336 952215 - 951091 - | hypothetical protein TERM 659 951387 - 951377 - G 74 -5.4 -4.64766 | CCCACATGTGAAAAA TCCA CGC TGGA AATTATGAGAGGGTT TERM 660 952024 - 952040 + g 77 -2.2 -5.40474 | ATTTATCTCCTCCTT CGGGAT TAAAT GTCCTG TTTTTTTGAAAAACT clpX 953450 - 952212 - | ATP-dependent protease ATP-binding subunit clpP 954075 - 953470 - | ATP-dependent Clp protease proteolytic subunit tig 955489 - 954053 - | trigger factor TERM 661 955241 - 955252 + g 70 -5.8 -4.386 | CCTTACTATCCAGAG GGGA GCTT TCCC TTTTCTGAACCCTTG gph 956154 - 955513 - | phosphoglycolate phosphatase aq_1343 956633 - 956151 - | hypothetical protein TERM 662 956424 - 956441 + g 75 -9.9 -3.44279 | overlap 956430 956436 GTAAATGTCTATACC CTTCAGG GCTT CCTGAAG TCTCTTTTCAGTCTT TERM 663 957363 - 957322 - g 70 -2.9 -4.91459 | overlap 957323 GAAGAGGCAGAAAAA CTCGCCGCGGAACTCATCC AGAA GGCTGAACTCCACGAAAAA AACGCAAGAAGACTG aq_1345 957037 - 957741 + | hypothetical protein TERM 664 957943 - 957919 - gf 74 -4.2 -4.93877 | opp_overlap 957939 GGCGAGTAAAGAAAA GGAGTGGGAA ATTCG TTCCGCCTCC CGCAGAGGATTTTTG aq_1347 957743 - 958273 + | hypothetical protein aq_1348 958188 - 958757 + | hypothetical protein TERM 665 959275 - 959263 - g 70 -6.3 -4.15577 | GGAAGAAGTAAAGAA GGAAA ACT TTTCC GCTTCCCTCGTGCTT aq_1349 958754 - 959560 + | hypothetical protein aq_1350 959557 - 961038 + | spermidine synthase TERM 666 962067 - 962057 - g 70 -5.4 -4.44277 | overlap 962064 TACGAAAAGGCAAAA GAAC AGA GTTC TGGTAAAACTGAAGA phoH 961064 - 962110 + | phosphate starvation-inducible protein TERM 667 962445 - 962435 - gT 72 -5.4 -4.47491 | AGAGGAAGAAAAGAA GTTC AGG GAAC TGGAGAACTACGTAC aq_1354 962034 - 962486 + | hypothetical protein lipA 963283 - 962453 - | lipoyl synthase aq_1356 963309 - 963743 + | hypothetical protein TERM 668 963783 - 963762 - f 76 -2.3 -5.38326 | overlap 963763 GTAAGTAAATAAAAA CTCTCTGAT ATAC ATCATAGAA ATTAATTTACAACAA TERM 669 965084 - 965096 + G 71 -7.7 -3.77196 | opp_overlap 965075 965084 GCAGAAGTTGGAAGA CAACC ATG GGTTG TTTACTACATACTCA cydA 963860 - 965266 + | cytochrome oxidase d subunit I TERM 670 965356 - 965368 + G 70 -6.3 -4.20516 | TTGACCTCGGTGTCG GGATA GTT TATCC TTTCTTGGCTAAAGA TERM 671 965606 - 965627 + G 77 -6.7 -4.59109 | opp_overlap 965606 AACTCCAGCACTGAA GAAAACTAT GGAC ATGGTTTTC TTTTTAGGAAGTCTC TERM 672 965730 - 965691 - g 74 -10.2 -3.18446 | gap 1, overlap 965689 965688 AACGTTATAAAAGGA CTTC-CCGTAAAACTCGTT GAA AAGGAGCTCTACGGCGAAG TGGTAAAAACGCACA TERM 673 965756 - 965740 - g 95 -10.9 -4.62471 | GCGAAGTGGTAAAAA CGCACAT GAT ATGTGCG GACCAGGACTGCAGT cydB 965268 - 966368 + | cytochrome oxidase d subunit II aq_1359 966894 - 966349 - | acetyltransferase murC 968216 - 966852 - | UDP-N-acetylmuramate-alanine ligase adh1 969247 - 968216 - | alcohol dehydrogenase TERM 674 968815 - 968831 + g 77 -5.1 -4.95854 | GCGGATAAGAGGCTG CTTCTTC AAA GGAGAGG TTTTTGGGTTTTTTA accB 969725 - 969261 - | biotin carboxyl carrier protein TERM 675 969450 - 969438 - G 79 -9.1 -3.87815 | CCCTACTTCTACAAA CGGAG GTG CTCCG GGAGCGGGAGAGCGG TERM 676 969598 - 969610 + g 74 -5.5 -4.59993 | TGGGGTTTTACGCCC TCCGG TGG CTGGA TTTCTTTGTAGGTTT efp 970300 - 969722 - | elongation factor P aq_1365 970488 - 971987 + | hypothetical protein thiE1 972656 - 972096 - | thiamine phosphate synthase spsI 973954 - 972668 - | glucose-1-phosphate thymidylyltransferase TERM 677 973389 - 973399 + g 93 -5.4 -5.57729 | CTTTTTGCAAGTTCG CTCA TCG TGAG TTTTTTCTGTTCTTT tagD2 974475 - 973969 - | glycerol-3-phosphate cytidyltransferase TERM 678 974383 - 974398 + gH 75 -10.4 -3.09933 | overlap 974385 TATGAGAAAGTCTCC GAGGGC TTTT GCCCTC TTCAGTAAGTTCAGA aq_1369 974450 - 975232 + | hypothetical protein rlpA1 975229 - 975744 + | rare lipoprotein A TERM 679 975762 - 975747 - f 74 -6.2 -4.34771 | opp_overlap 975732, overlap 975728 975726 GAAAACTTACTAAAA TTTTCC TTAT GGAAAA ACCATGGTCGGGAAG argH 975755 - 977128 + | argininosuccinate lyase TERM 680 977848 - 977860 + GF 70 -7.7 -3.66178 | opp_overlap 977848 977847 AGCCCTTGCGGAAAT GGGAA GAG TTCCC TTTGACGTTCAGGAA nuoH2 977204 - 977983 + | NADH dehydrogenase I chain H TERM 681 978034 - 978047 + GF 74 -3.1 -5.05606 | overlap 978012 AATATACCATTTGTA GGATT TGTG GATCC TTTATTTTTCTTGGG nuoH3 977950 - 978252 + | NADH dehydrogenase I chain H nuoI2 978259 - 978885 + | NADH dehydrogenase I chain I nuoJ2 978882 - 979418 + | NADH dehydrogenase I chain J nuoK2 979399 - 979707 + | NADH dehydrogenase I chain K TERM 682 980212 - 980190 - g 100 -7 -6.13503 | opp_overlap 980194 980198 980199, overlap 980194 CACGAACAAAAAAAA GCTACAAAAG CTT CCTTTGAAGC CTTCGTTATGAACAG TERM 683 980372 - 980353 - g 85 -12.2 -3.28712 | opp_overlap 980341 TTGGCGTTGCCACAA TGCTCCTC TTTG GAGGAGCA GTCGGAAAGTCGGGA nuoL3 979710 - 981644 + | NADH dehydrogenase I chain L nuoM2 981656 - 983161 + | NADH dehydrogenase I chain M nuoN2 983175 - 984641 + | NADH dehydrogenase I chain N nuoA1 984638 - 985018 + | NADH dehydrogenase I chain A TERM 684 985095 - 985083 - gf 75 -7.7 -4.08394 | ATAGGTGTTTTAAAA GCTCT GGA AGAGC TCGGTATAAAGGTAA TERM 685 985663 - 985634 - gf 71 -5.1 -4.45168 | gap 1, opp_overlap 985640, overlap 985637 985660 TTCGGAAAAGAGAAA GGA-GTTCTGCAAC GTA GTTATAGAACCTCC CCTTGAAGAGTTCTC aq_1386 984987 - 985766 + | hypothetical protein arsR 985792 - 986100 + | ArsR family transcriptional regulator TERM 686 986492 - 986506 + G 71 -5 -4.46233 | overlap 986493 TATTATTTTCGTTGT TTCCTT TAT AAGGAG TTTCTTTCCCCTTGA aq_1388 986343 - 987302 + | hypothetical protein fba 988224 - 987292 - | fructose-1,6-bisphosphate aldolase class II aq_1391 988669 - 989634 + | hypothetical protein TERM 687 989768 - 989720 - f 88 -9 -4.60073 | gap 2, opp_overlap 989727, overlap 989721 CACACAATTAGAAAA GGAGGCAGGAAGGGAGCTTTTCTA TTG TTGGAAA-CTCCCTCCCT-CCCCC TCCCTCCCCTATAGT TERM 688 989768 - 989721 - f 72 -9.2 -3.34959 | gap 1, opp_overlap 989727, overlap 989720 ACACAATTAGAAAAG GAGGCAGGAAGGGAGCTTTTCTA TTG TTGGAAA-CTCCCTCCCTCCCCC TCCCTCCCCTATAGT TERM 689 989788 - 989809 + F 90 -11.5 -3.86015 | overlap 989789 TCCCCTATAGTTTTT TGGCCCTCC GCCC GGAGGGCCC TTTCTAAAGCAAGTG TERM 690 989789 - 989808 + F 95 -15 -2.91395 | overlap 989788 CCCCTATAGTTTTTT GGCCCTCC GCCC GGAGGGCC CTTTCTAAAGCAAGT aq_1392 989839 - 990717 + | hypothetical protein lig 992458 - 990701 - | ATP-dependent DNA ligase TERM 691 992458 - 992469 + r 74 -4.4 -4.87291 | TTCTGTATTCCATCA CTTG CTTG CAAG TTTTTCCTTAGCGTA leuD 993114 - 992455 - | 3-isopropylmalate dehydratase TERM 692 993246 - 993256 + H 73 -5.4 -4.59212 | opp_overlap 993246 TCAGCGGGAAGGAAT CAGT CGG ACTG TTTATTTCCTTCCTT aq_1400 993552 - 995600 + | cellulose synthase regulator protein celY 995597 - 996574 + | endoglucanase fragment aq_1402 996504 - 998516 + | hypothetical protein aq_1403 998504 - 999496 + | hypothetical protein TERM 693 999614 - 999584 - g 76 -4.1 -5.09521 | gap 1, opp_overlap 999612, overlap 999578 999612 CCAAGAAAGCAAAAA CCGTTTTGATAGAC ACGG ATCC-CCAAAACGG AGTGGCTTCCGTTTT TERM 694 999807 - 999838 + G 72 -6.8 -4.17048 | opp_overlap 999791, overlap 999811 TCAAAACCTCTGTCT TAAACTCGAATC AGAAGGAG GATTTGAGTTTA TTCTTTTCGACACAC aq_1404 999493 - 1000227 + | hypothetical protein TERM 695 1000239 - 1000225 - T 70 -2.8 -5.02476 | overlap 1000228 ACACTCCTTAAAAAA TGAGTT TTA ACCTCA AAACTTTGTTTCTGT aq_1405 1000894 - 1000217 - | hypothetical protein TERM 696 1000431 - 1000458 + g 70 -2.8 -4.89393 | gap 1, opp_overlap 1000431 TCAGCAACGGAGTAA GGAAAGTAACTCT TAA AG-GTTATTTCCC TTTTTGTGAGCTTTC bcsA 1003149 - 1000870 - | cellulose synthase catalytic subunit TERM 697 1001025 - 1001015 - G 77 -6.8 -4.51097 | opp_overlap 1001015 1001013 GTAAGTACTACAAAA CCCT CAA AGGG TGTTAATTCCCTTTC TERM 698 1001307 - 1001321 + g 78 -10 -3.57971 | opp_overlap 1001304 1001307 GGGATATATCAATCA CCCTTC CCA GAAGGG TTTCAGAGTCCCTGT TERM 699 1001321 - 1001307 - G 71 -10 -2.83345 | opp_overlap 1001307, overlap 1001304 GGGATATATCAATCA CCCTTC CCA GAAGGG TTTCAGAGTCCCTGT TERM 700 1001576 - 1001560 - G 74 -8 -4.09739 | opp_overlap 1001560 GTAAGGTTTGTAAAA GGGACT GATAT AGTCCC TGTCTAGGAGTTCGC aq_1408 1003352 - 1004191 + | hypothetical protein aq_1409 1004130 - 1004525 + | hypothetical protein trpB2 1005826 - 1004522 - | tryptophan synthase subunit beta TERM 701 1005222 - 1005236 + g 85 -7.8 -4.73613 | GCTATTCCCAAACTG CCCGGA TGT TCTGGG TTTTCTTCGTAGTAC aq_1412 1006916 - 1005831 - | hypothetical protein TERM 702 1006158 - 1006175 + g 89 -9.9 -4.57341 | TTCTATACGGTGGTA CTTGAGC TTTG GCTCAAG TTTTTCAAAAGCCTT TERM 703 1008152 - 1008140 - g 74 -3.4 -5.16151 | GAAAGGGAAGAAAAA GAAC TCTTC GTTC AACTCGCACAGGTAG valS 1006934 - 1010431 + | valyl-tRNA synthetase furR2 1010893 - 1010435 - | FUR family transcriptional regulator TERM 704 1010680 - 1010713 + g 79 -2.6 -5.39755 | gap 1, opp_overlap 1010680 CGAACTCTTCAAGGA GTTTTACGGTTCTGT AAACG GTAGAAC-GTGAAAC TTTTTTATCCTTGTG mobA 1011505 - 1010900 - | molybdopterin-guanine dinucleotide biosynthesis protein A aq_1420 1012328 - 1011429 - | hypothetical protein aq_1421 1012351 - 1012944 + | hypothetical protein dpbF 1014686 - 1012941 - | DNA polymerase beta family protein pdxJ 1014723 - 1015451 + | pyridoxal phosphate biosynthetic protein PdxJ hemF 1016543 - 1015431 - | oxygen-independent coproporphyrinogen III oxidase aq_1426 1016582 - 1016884 + | hypothetical protein TERM 705 1017429 - 1017418 - g 74 -3.6 -5.03747 | overlap 1017420 1017421 AAAGCTTTCAAAAAA GAGC CACT GCCC CTACTTCTCGGAAGC lpxB 1016881 - 1017951 + | lipid A disaccharide synthetase aq_1428 1017961 - 1018590 + | hypothetical protein metF 1019472 - 1018582 - | 5,10-methylenetetrahydrofolate reductase ppdD1 1019553 - 1019915 + | pilin fimZ 1019985 - 1020344 + | minor pilin ppdD2 1020328 - 1020765 + | pilin TERM 706 1020794 - 1020807 + GF 72 -3.1 -4.91109 | gap 1 ACTGATAGAGGTTCT CGTAGC ATT GCT-CG TTTTTATAATCGGCG ppdD3 1020672 - 1021103 + | pilin TERM 707 1021596 - 1021586 - g 70 -5.4 -4.3739 | GACTGTGGGATAAAA GGAA TTA TTCC TAATGCGAGTGTAGC aq_1436 1021100 - 1021930 + | hypothetical protein aq_1439 1021935 - 1023788 + | hypothetical protein TERM 708 1023905 - 1023895 - g 76 -2.6 -5.24796 | TTCAGATAATAAAAA TAAT AAA ATTA GATATACAAAAAGCC oppA 1023795 - 1025549 + | extracellular solute binding protein TERM 709 1026018 - 1026000 - g 93 -8.9 -5.13473 | AGCAGATGGAAAAAA GTGGAGT GAATT ACTCCAC AGAATATCCGAAAAA TERM 710 1027421 - 1027407 - g 70 -2.9 -4.89477 | CTTTGAAGAAGAAAA TAAAG AAATA CTTTA CGAGCTGAAGGAAGA TERM 711 1028025 - 1028014 - g 86 -2.2 -5.66684 | GAAGCGATAAAAAAA CTCC TTAA GGAA ATAGCTGTAAGACTG aq_1442 1025935 - 1029099 + | hypothetical protein aq_1444 1029678 - 1029091 - | hypothetical protein ctrA2 1031753 - 1029714 - | cation transporter E1-E2 family ATPase aq_1446 1032367 - 1031810 - | hypothetical protein aq_1447 1034499 - 1032379 - | hypothetical protein mutT 1034923 - 1034504 - | 8-oxo-dGTPase domain-containing protein TERM 712 1035139 - 1035151 + G 74 -7.7 -4.07568 | opp_overlap 1035150 TTGACTTTCCCTTCA GGTTC AGA GAACC TTTTACGAGAAAGGA TERM 713 1035630 - 1035611 - g 74 -7.2 -4.29508 | gap 1, overlap 1035613 AGTCATAGGAATAAA CAC-GGCTA TAA TAGCCGGTG CTCAGGGACTTGGTT TERM 714 1035627 - 1035613 - g 80 -10 -3.7456 | overlap 1035611 TCATAGGAATAAACA CGGCTA TAA TAGCCG GTGCTCAGGGACTTG htrA 1034952 - 1036313 + | periplasmic serine protease rpoS 1036324 - 1037256 + | RNA polymerase sigma factor RpoS aq_1453 1037256 - 1038068 + | hypothetical protein TERM 715 1038208 - 1038198 - Tf 71 -4 -4.99568 | CAAGATGAAAGAAAA GATA AAG TATC CCGAACTCACTTTTA aq_1457 1039616 - 1038984 - | hypothetical protein aq_1455 1038417 - 1039127 + | hypothetical protein gcvT 1039761 - 1040666 + | aminomethyltransferase (glycine cleavage system T protein) npr 1042405 - 1040657 - | neutral protease TERM 716 1041738 - 1041758 + gF 71 -7.6 -3.85159 | AGTTTTCTTGGTCTC GGGAGGAA AGCTC TTTCTCCC TTCTTCCATTTTTCA TERM 717 1042713 - 1042731 + GH 71 -9.6 -2.83346 | overlap 1042700 1042692 1042719 TCCTCCGCCCTAGGC GTAGGAGG GGG CTTCCTAC TAGTTCCCTTTATGG aq_1462 1042119 - 1043009 + | hypothetical protein TERM 718 1043307 - 1043284 - g 81 -9.6 -3.92602 | opp_overlap 1043289 TGAAGAGCTTATAAA GGACATACCC GAGA GGGTATTTCC TGTGGGAAGGCTTGA aq_1464 1043006 - 1043755 + | hypothetical protein aq_1465 1043752 - 1044144 + | hypothetical protein aq_1466 1044505 - 1044125 - | hypothetical protein aq_1467 1045253 - 1044483 - | hypothetical protein folP 1046439 - 1045240 - | dihydropteroate synthase TERM 719 1046733 - 1046745 + H 71 -4.8 -4.56775 | ATATTTTGAATTTAG CTCC GGAAA GGAG TTTTTCAAGAGGGAT accC2 1047198 - 1048631 + | biotin carboxylase TERM 720 1049071 - 1049085 + G 72 -8.5 -3.64487 | opp_overlap 1049070 TTCCCTGTGACGAAT CCGCC GAGAG GGCGG TTCTTGGCAGTATGC TERM 721 1049861 - 1049849 - g 74 -7.7 -4.011 | TGAAGATTTAAAGAA GCTTG AAG CAAGC GCAATAGAACTCGCA dnaB 1049037 - 1050443 + | replicative DNA helicase TERM 722 1051014 - 1051004 - g 72 -5.4 -4.48823 | AACGAAGGGAGAAAA GAGT TTA ACTC AAGTAAACCCTACTC aq_1473 1050573 - 1051361 + | hypothetical protein TERM 723 1051408 - 1051392 - g 75 -4.3 -4.9645 | overlap 1051395 AGTAGAAGAAGAAAA CGAGAGG GAA CTCCTCG TAATCGTCCCTCAAA TERM 724 1051630 - 1051609 - g 72 -10.1 -2.93382 | TTCCAGAGGGACACA TCACCTGCC GTAA GGCTGGTGA ACACTGTTCTCATAA gspE 1051345 - 1052754 + | general secretion pathway protein E TERM 725 1053167 - 1053153 - g 71 -4.2 -4.78107 | GAGGAGGAGGAAAAA CTCCAT CAA AAGGAG GACGAAATAGAGGAA aq_1476 1052751 - 1053293 + | hypothetical protein recR 1054661 - 1054026 - | recombination protein RecR aq_1477 1053274 - 1054095 + | hypothetical protein aq_1480 1055510 - 1054920 - | hypothetical protein aq_1481 1056003 - 1055518 - | hypothetical protein aq_1482 1056485 - 1056000 - | hypothetical protein aq_1483 1057104 - 1056478 - | hypothetical protein TERM 726 1057102 - 1057112 + g 71 -2.4 -5.13473 | opp_overlap 1057102 CTTTATTTTAATTGA CACC CGA GGAG TTTTTTCAGTCTACT aq_1484 1057619 - 1057089 - | hypothetical protein himA 1057900 - 1057616 - | DNA binding protein HU rpsA 1059539 - 1057932 - | ribosomal protein S01 trmD 1060379 - 1059606 - | tRNA guanine-N1 methyltransferase rpoD 1062096 - 1060369 - | RNA polymerase sigma factor RpoD TERM 727 1060584 - 1060618 + g 71 -7.9 -3.84712 | overlap 1060581 CCTTCTGGAGTTGTT CCCTGAGGAGC TTTCTCGTGACCT GCTCCTCGGGG TTTGGTATGGACTTG TERM 728 1060779 - 1060800 + g 80 -8.8 -4.17132 | overlap 1060791 CCTCGGGGGTGGGTT CTCTTCCA TTTTCC TGGAAGAG TTTCTTAGAGGCTTT TERM 729 1061780 - 1061798 + g 84 -9.6 -4.17089 | opp_overlap 1061794, overlap 1061794 TAGTATATCTCTTCC TCCCTCTT GAG AAGGGGGA TTTTGCCCATTTCCC dnaG 1063631 - 1062135 - | DNA primase aq_1494 1063698 - 1064084 + | hypothetical protein ogt 1064678 - 1064073 - | O-6-methylguanine-DNA-alkyltransferase TERM 730 1064473 - 1064462 - G 93 -3 -5.86061 | CTTTATCAAAAAAAA TTTC AAGG GAAA GAGAAGGAGTAAGAG xylR 1065596 - 1064736 - | NagC/XylR family transcriptional regulator TERM 731 1065543 - 1065557 + g 76 -6.4 -4.45083 | CTTTTCCTTCTTTCC GTCTTC CCA GAGGAC TTTTATAAATGTCCC aq_1498 1065988 - 1065593 - | hypothetical protein TERM 732 1066345 - 1066330 - g 74 -7.6 -4.24326 | opp_overlap 1066329 AAAGACCACTTAAAA CCTCAA AACC TTGAGG GTATATCCAACGAAC TERM 733 1066384 - 1066366 - g 79 -9.6 -3.7642 | overlap 1066364 TCCAACGAACAAATA GAGCCTCA CTT TGAAGCTC ACTATAAAGGTTACG sodA 1066291 - 1066932 + | Fe/Mn family superoxide dismutase TERM 734 1067126 - 1067112 - g 77 -3.6 -5.24129 | TTCTGGTATAAAAAA GAAAAA AGT TCTTTC TGTTTTGAAGTAAAA aq_1501 1066938 - 1067708 + | hypothetical protein aq_1502 1068834 - 1067668 - | hypothetical protein aq_1503 1069474 - 1068818 - | hypothetical protein trk1 1070802 - 1069471 - | K+ transport protein TERM 735 1070322 - 1070303 - G 91 -10 -4.70879 | overlap 1070304 1070317 TTGAAAGTTGAAAAA CCCGCGTT GTTA AACGCGGA AACCGAGTGAAAGAT TERM 736 1070321 - 1070304 - G 83 -11.3 -3.41804 | overlap 1070303 1070317 TGAAAGTTGAAAAAC CCGCGTT GTTA AACGCGG AAACCGAGTGAAAGA nrdF 1072886 - 1070796 - | ribonucleotide reductase beta chain TERM 737 1071759 - 1071779 + g 70 -2.5 -4.99638 | overlap 1071761 GTCTATTGTCCCGTC CGCCTGA AGAACTA TCAGGAG TTTTTCTATCGGTGT TERM 738 1072847 - 1072866 + g 93 -2.9 -5.82281 | CTTGAGGGTTGAAAA TGAGTTT TCTGAC AAGCTCA TTTTTTTCTGTCTTT omt 1073630 - 1072992 - | O-methyltransferase aq_1508 1074489 - 1073611 - | hypothetical protein TERM 739 1073769 - 1073779 + g 70 -5.4 -4.42806 | GAACCAAATATGTGA GCTT GGA AAGC TTTGTTTCCAAATCC oppC 1075465 - 1074470 - | oligopeptide transport system permease aq_1510 1076124 - 1075465 - | hypothetical protein TERM 740 1075725 - 1075768 + g 70 -10.4 -2.61609 | opp_overlap 1075738, overlap 1075723 1075743 CGGAAGCGGTGTAGG CGTCAAGGTCAAATCTCATC CCGA GACGGGATTTCACCTTTACG GGTTTTATCGTTTCT TERM 741 1075743 - 1075755 + g 77 -9.1 -3.71649 | opp_overlap 1075738, overlap 1075725 1075723 CAAGGTCAAATCTCA TCCCG AGA CGGGA TTTCACCTTTACGGG icd 1076238 - 1077518 + | isocitrate dehydrogenase aq_1515 1077544 - 1077960 + | hypothetical protein aq_1516 1078019 - 1078513 + | hypothetical protein TERM 742 1078897 - 1078885 - g 80 -4.7 -5.18357 | overlap 1078886 GAAGTTATGAAAAAA GCGGG TGT CCCGG TAGTCCCCGGCTCAG pycB 1078513 - 1079931 + | pyruvate carboxylase N-terminal domain-containing protein TERM 743 1081367 - 1081353 - g 80 -8.6 -4.19817 | CCCATGCAGGCAAAA GAGTTC TTT GAACTC AGGGAAAAGGGAGAA pycA 1079955 - 1081922 + | pyruvate carboxylase subunit B aq_1525 1081963 - 1082547 + | hypothetical protein TERM 744 1082622 - 1082607 - g 73 -4.8 -4.66163 | overlap 1082609 ATTTGTATGGAAAAA GTTTTT TTGG AAAAAC TCCAGAAAACCTTGC aq_1526 1082598 - 1083515 + | hypothetical protein aq_1527 1083586 - 1084476 + | hypothetical protein TERM 745 1085055 - 1085039 - gf 72 -4.4 -4.70626 | GAAGAACTCGAAAAA TTAGCG GAGCT CGCCAA AAGGTTGGGCGTCAG aq_1528 1084448 - 1085260 + | hypothetical protein aq_1530 1085257 - 1086279 + | hypothetical protein TERM 746 1086737 - 1086716 - g 83 -5.8 -5.1963 | opp_overlap 1086716 1086720 TGGAATGAAGAAAAA GACAGCCC TTGCTC GGGCTCTC TCCTTAGACCCAGAA abcT10 1086276 - 1087019 + | ABC transporter TERM 747 1087578 - 1087560 - g 73 -4.6 -4.79657 | opp_overlap 1087568, overlap 1087561 AGAATACCAACAAAA CCCTCAAA TCT TTTGAAGA ATTATCTGGAAAACT aq_1533 1087007 - 1087909 + | hypothetical protein pepQ 1089422 - 1088358 - | xaa-pro dipeptidase aq_1534 1087903 - 1088415 + | hypothetical protein TERM 748 1088806 - 1088817 + gT 81 -5.8 -5.08015 | ATGTCTATCAAGAGT GGAG CGTT CTCC TTTATTTTTTCCCTT TERM 749 1088883 - 1088904 + gT 71 -3.7 -4.83615 | gap 1, overlap 1088884 GCTTGCGACTATCGC CGG-GAAGCT TTC ACCTTCTCCG TTTTTCTCAAAAATC aroA 1090719 - 1089424 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 750 1090022 - 1090062 + g 91 -6.2 -5.32396 | gap 1, opp_overlap 1090035, overlap 1090025 GCAGAGGAGGGATCC GCAGGACAGTAAACTTCCG TTCC CTGAAGTTC-CTGTCCTCC TTTTATTTTTACTAT fliN 1091095 - 1090757 - | flagellar switch protein FliN gcpE 1092152 - 1091079 - | GcpE protein TERM 751 1092354 - 1092366 + G 71 -4.9 -4.56597 | TACAATATCTTTGAA GTTTT TAT AAAAC TTTTTGAAAGGGAGA TERM 752 1092400 - 1092386 - g 74 -4.2 -4.94992 | overlap 1092387 TGAAAGGGAGAAAAA TCTGGA AAC TCCAGG AATTCAGTCCCTGTG TERM 753 1092593 - 1092606 + G 73 -4.5 -4.77757 | AGCCTTTTTCACGGC GTCCT TTTT GGGAC TTTTGCTTTTTACCG aq_1542 1092168 - 1092740 + | hypothetical protein TERM 754 1092923 - 1092913 - g 74 -4 -4.99947 | CGTAAGTAAAGAAAA CTTT TTT AAAG AAATTGAAAAAATCC rfaC1 1092737 - 1093675 + | ADP-heptose:LPS heptosyltransferase TERM 755 1095055 - 1095041 - g 82 -7.8 -4.57073 | TACCTCGCCCAAAAA CTCGGA AAA CCCGAG GAGTACATAGACGAA aq_1545 1093706 - 1095139 + | hypothetical protein kpsF 1096104 - 1095136 - | polysialic acid capsule expression protein ppa 1096641 - 1096105 - | inorganic pyrophosphatase trpA 1097636 - 1096848 - | tryptophan synthase alpha subunit aq_1549 1098022 - 1097624 - | hypothetical protein TERM 756 1098051 - 1098036 - R 81 -11.8 -2.88292 | overlap 1098028 1098031 ATAAAGAGGATTATA CCCGCC CGAA GGCGGG TGAAAGGAATTATTT cycB2 1098375 - 1098061 - | cytochrome c552 fabI 1099281 - 1098424 - | enoyl-[acyl-carrier-protein] reductase (NADH) aq_1554 1100044 - 1099250 - | fructose-bisphosphate aldolase cysM 1100086 - 1101069 + | cysteine synthase, O-acetylserine (thiol) lyase B aq_1558 1101097 - 1102194 + | hypothetical protein mglA1 1102175 - 1102747 + | gliding motility protein aq_1562 1102744 - 1104126 + | hypothetical protein abcT13 1104123 - 1105787 + | ABC transporter TERM 757 1107170 - 1107149 - gf 71 -5.1 -4.55093 | gap 1 TGACAGAATAAGAAA GCTCGTAGCC TTT GGCTG-GAGC GAGGAGGAGATAAAG gltB 1105818 - 1110299 + | glutamate synthase large subunit TERM 758 1110857 - 1110875 + GF 73 -7.4 -4.03909 | CTGAAAGAAATTTTC GGAGACAG AAC CTTTCTCC TCTTTTTACTCTCTC aq_1569 1110269 - 1111405 + | hypothetical protein aq_1570 1111294 - 1111680 + | hypothetical protein TERM 759 1111680 - 1111668 - f 80 -6.3 -4.6902 | CCAGAAGTTTAAAAA TTACC TGA GGTAA GAGGATGTACTTTTA aq_1571 1111685 - 1112365 + | hypothetical protein aq_1574 1112805 - 1112362 - | hypothetical protein aq_1575 1112819 - 1113568 + | hypothetical protein mutL 1113601 - 1114878 + | DNA mismatch repair protein MutL iagB 1114896 - 1115450 + | invasion protein IagB pyrF 1115453 - 1116148 + | orotidine-5'-phosphate decarboxylase TERM 760 1116208 - 1116219 + G 70 -5.8 -4.42235 | AAGACCTTTTACTAC GACG TTTA CGTC TTCTTTTTCAGAGTT aq_1581 1116145 - 1116648 + | hypothetical protein gidB 1116629 - 1117219 + | glucose inhibited division protein B aq_1583 1117204 - 1117893 + | hypothetical protein TERM 761 1117937 - 1117947 + G 80 -6.8 -4.87786 | opp_overlap 1117937 CCTATTTCACGCAAA GGGA AGT TCCC TTTTTATGACCTTCA TERM 762 1118153 - 1118139 - g 77 -4.3 -5.1417 | opp_overlap 1118139 TTAGAAAAGGAAAAA GAAGT TGAGT ACTTC TTGAGTTTCGTGGTT aq_1585 1117890 - 1119074 + | hypothetical protein atpF1 1119108 - 1119542 + | ATP synthase F0 subunit b atpF2 1119542 - 1120099 + | ATP synthase F0 subunit b atpH 1120092 - 1120637 + | ATP synthase F1 delta chain ndk 1120638 - 1121066 + | nucleoside diphosphate kinase shyS 1121063 - 1121713 + | soluble hydrogenase small subunit aq_1593 1121827 - 1122186 + | hypothetical protein fliI 1123836 - 1122505 - | flagellar export protein aq_1596 1124446 - 1123763 - | hypothetical protein TERM 763 1124537 - 1124555 + H 75 -10.4 -3.23216 | opp_overlap 1124535 TGTAGCCCTAATAGT GGGAATTA CCT TAATTCCC TTCATACTCCTCGGA aq_1598 1124683 - 1125633 + | hypothetical protein aq_1599 1126095 - 1125619 - | hypothetical protein pilD 1126887 - 1126123 - | type 4 prepilin peptidase TERM 764 1126644 - 1126634 - G 77 -4.6 -5.03715 | AGCACCGCTAAAAAA CCCG AAG CGAG CTCCACTAAAGGATA TERM 765 1126904 - 1126916 + r 80 -6.3 -4.70659 | CGGTTTGCACCTCTC CTCTT TTA AAGAG TTTTTGCATATCCAG secF 1127750 - 1126884 - | protein-export membrane protein TERM 766 1127184 - 1127174 - G 74 -6.8 -4.40561 | overlap 1127171 TCCTGTCAAAAATAA CGAC TGT GTCG GCAACGGAATATCCT aq_1603 1128403 - 1127747 - | hypothetical protein pabC 1129827 - 1129090 - | aminodeoxychorismate lyase dcd 1130362 - 1129820 - | deoxycytidine triphosphate deaminase TERM 767 1130441 - 1130431 - R 75 -5.4 -4.80396 | GAAAAGACTCAAAAA GAAG GAC CTTC AGGGAGTAAGAGATC modA 1131411 - 1130689 - | molybdate periplasmic binding protein radC 1132103 - 1131408 - | DNA repair protein RadC TERM 768 1132041 - 1132051 + g 74 -5.4 -4.69559 | TTCTCTCGGTCTTAA TTCC TCG GGAA TTTCTTTTAACCTTT aq_1612 1133539 - 1132079 - | hypothetical protein hisG 1134155 - 1133511 - | ATP phosphoribosyltransferase oadA 1136014 - 1134152 - | pyruvate carboxylase subunit B TERM 769 1134601 - 1134624 + g 74 -7.4 -4.17132 | gap 1, opp_overlap 1134600 CGGTAACGTAGAACT CTACGG-GAGC CTT GCACTCCGTAG TTTCTTCCACCGTTT TERM 770 1136960 - 1136971 + G 71 -2.2 -5.04601 | TACAGGAACCGCACC CTTG ATAG CGAG TTTTTCCTTTGTAAC aq_1618 1136058 - 1137299 + | hypothetical protein TERM 771 1138171 - 1138147 - g 81 -10.7 -3.50332 | opp_overlap 1138147, overlap 1138143 TATGGACATAATCAA GCTCGCGGG AGGAGAA CCCGCGAAC TTCCTTGACGTGGGT sucC2 1137329 - 1138486 + | succinyl-CoA ligase beta subunit sucD2 1138498 - 1139415 + | succinyl-CoA ligase alpha subunit aq_1625 1140007 - 1140756 + | hypothetical protein aq_1627 1140765 - 1141145 + | hypothetical protein pol 1141158 - 1142027 + | DNA polymerase I nfo 1142857 - 1142009 - | deoxyribonuclease IV TERM 772 1142475 - 1142485 + g 71 -4 -4.76213 | opp_overlap 1142475 TATTCCGAAAAAACT TCTT CCA AAGA TTTTATTACGTTTCT aq_1630 1143834 - 1142857 - | hypothetical protein aq_1631 1144397 - 1143906 - | hypothetical protein aq_1632 1145574 - 1144450 - | hypothetical protein TERM 773 1145583 - 1145594 + H 76 -2.2 -5.40072 | overlap 1145583 TTCCCATACTTCACC TCCT TTTA GGGA TTTTTTTAAAAGAAA gspA 1145742 - 1146683 + | glycerol-3-phosphate dehydrogenase (NAD+) TERM 774 1146831 - 1146801 - T 71 -6.8 -3.97947 | opp_overlap 1146818 1146823 1146826, overlap 1146824 CGCATTTAGGACAAA GTTCCTTCATAACC TCA GGTAAAGAGGGAAC TTACAGAAGTTCCCT TERM 775 1146823 - 1146848 + T 75 -10.5 -3.07242 | opp_overlap 1146801 1146824 1146835, overlap 1146818 1146826 CATAACCTCAGGTAA AGAGGGAACTT ACAG AAGTTCCCTCC TGTATCCTTCTTATG TERM 776 1146847 - 1146824 - T 95 -14 -3.67141 | opp_overlap 1146823 1146818 1146826, overlap 1146801 1146835 ATAACCTCAGGTAAA GAGGGAACTT ACAG AAGTTCCCTC CTGTATCCTTCTTAT TERM 777 1146826 - 1146845 + T 76 -10.8 -2.74182 | opp_overlap 1146801 1146824 1146835, overlap 1146823 1146818 AACCTCAGGTAAAGA GGGAACTT ACAG AAGTTCCC TCCTGTATCCTTCTT prs 1147750 - 1146815 - | phosphoribosylpyrophosphate synthetase TERM 778 1146931 - 1146895 - G 70 -7.5 -3.96216 | gap 1, opp_overlap 1146886 GTGCGATGGAAACAA CTTCCAGTTTACCGAA CTTCTT TTC-GTAAACGGGAAG CGTGTTCGTCACGAT lplA 1150245 - 1147879 - | lipoate-protein ligase A TERM 779 1150112 - 1150124 + gH 77 -4.9 -4.91511 | TGAGATATACACTCC TTTCT ATA AGAAA TTTTTATCATAGAAT glpC 1150163 - 1151350 + | oxido/reductase iron sulfur protein aq_1640 1152493 - 1151528 - | hypothetical protein cap 1152537 - 1153487 + | capsular polysaccharide biosynthsis protein rplU 1154200 - 1153904 - | ribosomal protein L21 rplO 1154661 - 1154212 - | ribosomal protein L15 rpmD 1155051 - 1154674 - | ribosomal protein L30 rpsE 1155664 - 1155038 - | ribosomal protein S05 rplR 1156050 - 1155676 - | ribosomal protein L18 rplF 1156614 - 1156063 - | 50S ribosomal protein L6 rpsH 1157133 - 1156627 - | ribosomal protein S08 rpsN 1157362 - 1157174 - | ribosomal protein S14 TERM 780 1157206 - 1157219 + g 71 -9.5 -3.08679 | opp_overlap 1157199 1157196 TAACACCAGGTAGAT CGCCC CTGA GGGCG TGTTCCCTGAAGCAA rplE 1157962 - 1157396 - | 50S ribosomal protein L5 TERM 781 1157641 - 1157655 + g 71 -4.2 -4.77173 | AGATAAGCTTGTCAA GGAAGT CCC ACATCC TTTCTTTTCTGAGGG rplX 1158362 - 1157964 - | ribosomal protein L24 rplN 1158727 - 1158362 - | ribosomal protein L14 aq_1655 1158873 - 1159421 + | hypothetical protein aq_1656 1159408 - 1160355 + | hypothetical protein gcsH2 1160818 - 1160333 - | glycine cleavage system protein H fucA1 1161365 - 1160802 - | fuculose-1-phosphate aldolase bioW 1162136 - 1161414 - | 6-carboxyhexanoate--CoA ligase aq_1660 1162147 - 1162665 + | hypothetical protein spoU 1163286 - 1162651 - | rRNA methylase SpoU TERM 782 1163246 - 1163256 + g 77 -6.8 -4.56597 | AGCACTTCCCTTAGG CGCT TTA AGCG TTTTTCAAGAACGAG TERM 783 1163790 - 1163806 + G 72 -8.1 -3.90316 | GAGAGGAGGGATTAT CTTTCAA AGC TTGAAAG TGTTTTTCAGGAACT TERM 784 1164704 - 1164688 - g 74 -2.2 -5.18371 | opp_overlap 1164689, overlap 1164689 CTTTAGAAAAGAAAA TCCTTG AAAGG CAAGGT GTATCCATAGATCAG flgK 1163541 - 1164821 + | flagellar hook associated protein FlgK TERM 785 1165819 - 1165801 - g 70 -10.4 -2.57003 | overlap 1165800 TTAGTAATAATAGAC CTGATTAC CAA GTAATCAG TAAACCCTTTAATAA TERM 786 1165948 - 1165934 - g 75 -4.3 -4.88407 | AAGAAATGAACAAAA CTATC AGGAA GATAG AAAACTCGTCCTTGA TERM 787 1165993 - 1165974 - g 74 -3.4 -5.0925 | CTTGAAAAGCAAAAA TCCGAGGC TGAA GACGCGGA CCTTGCAAAGTCTAT flgL 1164831 - 1166099 + | flagellar hook associated protein FlgL accC1 1167430 - 1166096 - | biotin carboxylase TERM 788 1166884 - 1166905 + g 80 -7.3 -4.4831 | CCGCCTCTTTCTTCG CTAAGGGAA ACTT TTCCCTCAG TTCTTTTTCATCCCT mdh2 1168447 - 1167443 - | malate dehydrogenase TERM 789 1168293 - 1168303 + gr 85 -5.4 -5.28176 | GCCTTAGCTTTCGCA GGTT CTA AACC TTTTTTATACCTCGC aq_1666 1168979 - 1168398 - | hypothetical protein TERM 790 1169019 - 1168998 - R 90 -11.5 -3.89822 | overlap 1168999 TATTTATTTTAGAAA GGGCCTCCC GGGC GGGAGGCCA AAAATCGGTGGAGGG TERM 791 1169018 - 1168999 - R 100 -15 -2.93572 | overlap 1168998 ATTTATTTTAGAAAG GGCCTCCC GGGC GGGAGGCC AAAAATCGGTGGAGG thrS 1171148 - 1169232 - | threonyl-tRNA synthetase TERM 792 1171043 - 1171053 + g 71 -8.2 -3.82117 | TTCCGTTTATTACTC CGCC GAG GGCG TCTTTTATACCTGCA aq_1668 1171185 - 1172066 + | hypothetical protein aq_1669 1172063 - 1172557 + | hypothetical protein TERM 793 1172572 - 1172551 - f 79 -3.1 -5.39755 | GAGAATGATAAAAAA GGATTAA TGTGGTTT TTAATCC TCCTCGTAGGTTTCA aq_1670 1172557 - 1173765 + | hypothetical protein hslV 1173775 - 1174305 + | ATP-dependent protease peptidase subunit clpB 1177443 - 1174423 - | ATPase subunit of ATP-dependent protease TERM 794 1174452 - 1174470 + g 71 -3.8 -4.8083 | overlap 1174451 1174417 TCTCTTCGGAGGATG CGGAAACC TCA GCTTTCTG TTTTTCGTACTCTTC TERM 795 1174808 - 1174840 + g 70 -5.6 -4.43911 | gap 1, opp_overlap 1174808 CTGTTGATGAATTCA GGTCTCATGTAGAGC TTGA GCTCTTCAAGA-ACC TTTTCCTTAGCCTTT TERM 796 1175081 - 1175097 + g 78 -8.7 -4.10161 | GAGTATGGTTTTCTC CTTACCG CTT CGGTGAG TTTTCCGCCCTCCTC TERM 797 1175772 - 1175784 + g 85 -7.7 -4.7219 | overlap 1175769 TAGCCTCTATTATCT GCTCT TCC AGAGC TTTTATCTTCCTCTC TERM 798 1175981 - 1175991 + g 72 -6.8 -4.26792 | AACTGCTCAAGTCTT GGTC TCA GACC TTTTAGGATTTCTAT aspS 1177548 - 1179359 + | aspartyl-tRNA synthetase TERM 799 1179877 - 1179858 - g 73 -9.2 -3.54424 | opp_overlap 1179858 CGTTATCGTTGCAAA CGACGCCT TCGG AGGCGACG TATTCGAAGAGGGCA fumX 1179364 - 1179921 + | C-terminal fumarate hydratase, class I aq_1680 1179914 - 1180711 + | hypothetical protein amiB 1181771 - 1180692 - | N-acetylmuramoyl-L-alanine amidase aq_1682 1183401 - 1181743 - | hypothetical protein alg 1186099 - 1183451 - | alginate synthesis-related protein TERM 800 1183975 - 1183991 + g 80 -7.3 -4.57353 | opp_overlap 1183985, overlap 1183985 1183986 CGTGGTCAGGGACTT CCTGATA AAG TGTCAGG TTTTCTATCCTGACG aq_1687 1187541 - 1186099 - | hypothetical protein aq_1689 1189078 - 1187534 - | hypothetical protein TERM 801 1188508 - 1188558 + g 71 -9.1 -3.29854 | opp_overlap 1188510, overlap 1188506 1188510 GATTTTCCCCCGTTA AAGCCTTTCCCCTGTACCTGAAC TCTCC GTTTATATACAGAGGAAAGGCTC TCTTGTAACTCTTTT TERM 802 1188556 - 1188510 - G 100 -13.9 -3.53012 | opp_overlap 1188508 1188506 1188510 TTTTCCCCCGTTAAA GCCTTTCCCCTGTACCTGAAC TCTCC GTTTATATACAGAGGAAAGGC TCTCTTGTAACTCTT TERM 803 1188510 - 1188556 + g 83 -11.7 -3.2006 | opp_overlap 1188510, overlap 1188508 1188506 TTTTCCCCCGTTAAA GCCTTTCCCCTGTACCTGAAC TCTCC GTTTATATACAGAGGAAAGGC TCTCTTGTAACTCTT TERM 804 1188964 - 1188976 + g 71 -4.9 -4.56597 | opp_overlap 1188964 TTTCAAACAAAGGTA TTAGA TCT TCTAA TTTTTCGGAAGAAGC aq_1691 1189111 - 1189527 + | hypothetical protein TERM 805 1189628 - 1189611 - g 70 -2.7 -4.88795 | opp_overlap 1189613, overlap 1189613 ATGGAAGAAAAGAAA GAGGATA AGTT TATCCTT CTAAAAAACCTCTAC TERM 806 1189647 - 1189637 - g 72 -3.2 -5.0133 | overlap 1189638 TATCCTTCTAAAAAA CCTC TAC GAAG AGTGGAAAGACTGCA dplF 1189596 - 1190183 + | N-terminus of phage SPO1 DNA polymerase aq_1694 1190883 - 1190170 - | hypothetical protein aq_1695 1191805 - 1190915 - | hypothetical protein TERM 807 1192218 - 1192205 - R 70 -9.5 -2.52676 | overlap 1192192 1192190 CACGTGGGTAACCTA CCCCC AGGA GGGGG ATAACCCCGGGAAAC TERM 808 1192238 - 1192223 - R 86 -11.8 -3.31792 | overlap 1192234 CCAGGAGGGGGATAA CCCCGG GAAA CCGGGG CTAATACCCCATAAT TERM 809 1192280 - 1192253 - R 72 -9.1 -3.3676 | gap 1, overlap 1192254 1192269 GCTAATACCCCATAA TGCCACC-CGCC ACTAA GGCGCGGTGGCC AAAGGGGGCCTCTGG TERM 810 1192279 - 1192254 - R 83 -12.6 -2.61735 | gap 1, overlap 1192253 1192269 CTAATACCCCATAAT GCCACC-CGCC ACTAA GGCGCGGTGGC CAAAGGGGGCCTCTG TERM 811 1192304 - 1192269 - R 83 -11.8 -3.14931 | gap 1, overlap 1192254 1192253 1192284 GCCACCCGCCACTAA GGCGCGGTGGCCAAAGG GGG CCTCTGGCCTTCG-GCC ACGCTCCCGCCTGGG TERM 812 1192724 - 1192704 - R 82 -11.1 -3.60475 | AAGCGGGATGTCAAA GCCCACGGC TCA ACCGTGGAC CGGCATCCCGAACTG TERM 813 1193098 - 1193113 + r 77 -10.4 -3.31461 | GACATGCCGGGGAGA CTCCGC GAAA GCGGAG TTGTGGAAGTCCCTA TERM 814 1193567 - 1193548 - R 100 -15 -3.05715 | overlap 1193519 AAGTCCCCGAGCTAA CCGGCTCC TTCG GGAGCCGG AGGCAGGGGCCGATG TERM 815 1193689 - 1193670 - R 91 -10.7 -4.58076 | opp_overlap 1193684, overlap 1193660 1193684 ATAACGGAGACAAAA GCTCCCC ACAAAA GGGGAGC TCATCCCTGTCTAGT TERM 816 1193921 - 1193891 - R 83 -12.6 -2.70932 | opp_overlap 1193870 1193889 1193884 CCTGCTTTGCAAGCA GGAGGTCGTGGG TTCGAGT CCCACCACCTCC ACTTGGCTCCTTGTC TERM 817 1194143 - 1194110 - R 70 -8.7 -3.32844 | overlap 1194096 1194095 CCCGGCAGGCGACAA GCCTGCCATCCCGCC TTCG GGCGGGAAGGGAACC GGCCGAAGCAAAACC TERM 818 1194269 - 1194232 - R 74 -9.2 -3.59979 | gap 2 GGGGCTCAGCCCAAA CCCTGTGGGTGCCATGGC GGCG GCCTTAGC-C-CACAGGG GGTAGCGGGACGTGC TERM 819 1194539 - 1194528 - R 76 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC TGGC GGGG AGTGAAATAGAACCT TERM 820 1195347 - 1195329 - R 75 -10.3 -3.10894 | overlap 1195342 1195343 ATGAGTAGGAGCGAA GGCAGGT GAGAA ACCTGCC CGCCGGAAGCCCAAG TERM 821 1196255 - 1196238 - R 70 -9.8 -2.52464 | TGGGGTCCTAACCCA GCGGGG TGAATC CCCCGC GGGGACAGTGCTAGG TERM 822 1197152 - 1197136 - R 76 -10.9 -2.69468 | opp_overlap 1197151, overlap 1197133 CAGTTGGATAGAGCA GGGGATT TCT AATCCCC AGGTCGGGGGTTCGA aq_1695a 1198440 - 1197190 - | hypothetical protein TERM 823 1197283 - 1197300 + g 84 -8.5 -4.31837 | TAAATATTTTTTCTT GGTGATT ACGT AATCACC TTTCTTAAATTTATT galF 1199330 - 1198437 - | UDP-glucose pyrophosphorylase aq_1706 1199841 - 1199317 - | hypothetical protein TERM 824 1199781 - 1199766 - G 72 -3.2 -4.9448 | overlap 1199768 1199775 AGTGAGTAAAGAAAA CGTCCA GAAG TGGATG CCTCGCATTGTTTAT ribC 1200458 - 1199835 - | riboflavin synthase subunit alpha pfkA 1201425 - 1200460 - | 6-phosphofructokinase metE 1203707 - 1201422 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 825 1203875 - 1203857 - g 70 -6 -4.16921 | overlap 1203858 GAAGAACTTGGAAAA CCGCTTTC CGG GAAAACGA TAGCCCTTCTCTTCA TERM 826 1203909 - 1203895 - g 71 -7.8 -3.85698 | CCTTCTCTTCACAAA GCCCTC AAC GAGGAC AAGGGTTTCCTTTGA argF 1203752 - 1204672 + | ornithine carbamoyltransferase flgI 1205735 - 1204653 - | flagellar basal body P-ring protein TERM 827 1204861 - 1204890 + gT 73 -7.1 -4.03413 | overlap 1204866 TCTCCGGGAGAAAGG GGAGGGGGCTGGA CGAC TTCAGGCCTTTCC TTTATCTCCACAACT TERM 828 1205050 - 1205040 - GT 73 -6.8 -4.1552 | TACTTTTGCAAGAAA GTCC ACG GGAC TGTAACCCTCGGGAA TERM 829 1205132 - 1205142 + gT 85 -6.8 -5.06451 | AAGCCCTGTTTATTA CGTC CTG GACG TTTTTTGCCGTGGTA flgH 1206346 - 1205696 - | flagellar L-ring protein FlgH TERM 830 1206100 - 1206086 - GH 70 -5.7 -4.39426 | TATAGCGTTAGAAAA GGAAG TGCTC CTTCC CACGTTCGTGGATAC fabG 1206406 - 1207152 + | 3-oxoacyl-[acyl-carrier-protein] reductase acpP 1207165 - 1207401 + | acyl carrier protein TERM 831 1207615 - 1207599 - g 82 -5.1 -5.28176 | opp_overlap 1207602, overlap 1207602 TTTATGGATAAAAAA GAGGC GAGAAAA GCCTC CCGCTTTGTCCAGTT fabF 1207398 - 1208645 + | 3-oxoacyl-[acyl-carrier-protein] synthase II maf 1208642 - 1209214 + | MAF protein aq_1719 1209780 - 1209385 - | hypothetical protein ffh 1211176 - 1209812 - | signal recognition particle receptor protein truD 1212374 - 1211217 - | tRNA pseudouridine synthase D TERM 832 1211613 - 1211637 + g 77 -11.5 -2.62184 | overlap 1211615 AACCACAAAGGTGTA GAGGTACCTGT TCC ACAGGTAACTC TGGTATGCAAAAACG TERM 833 1211655 - 1211667 + g 71 -4.9 -4.58395 | opp_overlap 1211655 GTATGCAAAAACGAA CATAA GCC TTATG TTTTTCGGCAGTACC degT 1212399 - 1213439 + | DegT/DnrJ/Eryc1 family transcriptional regulator lepA 1213458 - 1215260 + | GTP-binding protein LepA aq_1727 1216169 - 1215237 - | hypothetical protein pheT 1217400 - 1219727 + | phenylalanyl-tRNA synthetase beta subunit TERM 834 1220066 - 1220055 - g 71 -4.4 -4.73341 | overlap 1220058 AAAAAATCAAAGAAA GTAG CCCT CTAC TGCCCCATAAAAGGC TERM 835 1220171 - 1220145 - g 78 -10.2 -3.66874 | TTAATCCTACCGAAA GTAGAGGGAAAC GAG ATATCCCTCTAC AGAGTTCACTCACCA TERM 836 1220363 - 1220380 + G 70 -6.3 -4.21827 | gap 1, overlap 1220364 AGTAAAAGGCTTGAA G-GTAGGC GTC GCCTACTC TTTTCAGGTATTTGA TERM 837 1220364 - 1220378 + G 78 -10 -3.70051 | overlap 1220363 GTAAAAGGCTTGAAG GTAGGC GTC GCCTAC TCTTTTCAGGTATTT aq_1731 1219923 - 1220483 + | hypothetical protein TERM 838 1221828 - 1221841 + G 71 -8.1 -3.86015 | ACCCGTAAGATATCC CGAGG TTGC CCTCG TTTGTGCAGCGGATG aq_1732 1220470 - 1222146 + | hypothetical protein TERM 839 1223210 - 1223192 - g 82 -8.2 -4.58663 | overlap 1223202 AGGAGTTCCCAAAAA CCTTTCAA AGT CTGAAAGG AAACTTTTAGAAAAG dnaJ1 1222227 - 1223321 + | chaperone DnaJ cfa 1224494 - 1223292 - | cyclopropane-fatty-acyl-phospholipid synthase lytB 1224574 - 1225443 + | LytB protein aq_1740 1225416 - 1225934 + | hypothetical protein aq_1741 1226345 - 1225914 - | hypothetical protein TERM 840 1226381 - 1226369 - R 76 -9.1 -3.63782 | TAATACTACCTGAAA GGGCT TCT AGCCC CACCTGGCTCCTTGG TERM 841 1226820 - 1226832 + r 71 -6.9 -4.01888 | AATCGCCTACCTATA CGCCG TAA TGGCG TTTCTAATGTACCGT lgtF 1227642 - 1226887 - | beta 1,4 glucosyltransferase TERM 842 1227042 - 1227058 + g 74 -2.3 -5.2422 | overlap 1227044 AAGTCCACACAGGTC TTGTGAA AAG TTCGTAA TTTTTTACTATCCTT TERM 843 1228002 - 1227992 - g 71 -4 -4.86731 | opp_overlap 1227975 CTTTTTGAAAGAAAA GTAT TCA ATAC GTTCCCATATAGATT aq_1743 1227660 - 1228937 + | hypothetical protein gpmA 1229578 - 1228916 - | phosphoglycerate mutase murE 1231247 - 1229799 - | UDP-MurNac-tripeptide synthetase tyrS 1233649 - 1232471 - | tyrosyl-tRNA synthetase TERM 844 1234134 - 1234124 - g 87 -5.4 -5.46276 | AAGAGATAGAAAAAA CTGT AAG ACAG AGGATTAAGAAGTAC aq_1752 1233688 - 1234239 + | hypothetical protein nlpD2 1234799 - 1234236 - | lipoprotein NlpD fragment aq_1754 1235844 - 1234777 - | hypothetical protein tyrA 1235819 - 1236754 + | prephenate dehydrogenase exbB 1236751 - 1237197 + | biopolymer transport exbB aq_1758 1238117 - 1237167 - | hypothetical protein aq_1760 1238974 - 1238129 - | hypothetical protein aq_1761 1241043 - 1239007 - | hypothetical protein TERM 845 1239206 - 1239230 + g 73 -6.4 -4.36778 | opp_overlap 1239206 ACGAGCCTCGAGAAA GGTGGAAGGA ACTCC TCTTTCCTCC TTTTCAGTTCTCTTT TERM 846 1240349 - 1240364 + g 72 -3.2 -4.89233 | TCGGAAAGTGCTTTG GGGTAA AGGA TTTCCC TTTTTAATATTCCTC aq_1763 1241651 - 1242745 + | hypothetical protein TERM 847 1244656 - 1244643 - g 76 -5.9 -4.87626 | overlap 1244644 CCTGAAGAGGAAAAA CGGCC CCAC GGCCA TAATACTCACGAGAC TERM 848 1244922 - 1244906 - g 72 -5.8 -4.55023 | CCGAAGAGTACAAAA GGGAAG TTCTG CCTCCC GAAGTTACGAAGAGG tktA 1243042 - 1245111 + | transketolase rpsT 1245177 - 1245518 + | ribosomal protein S20 TERM 849 1246223 - 1246213 - g 74 -3.2 -5.08088 | overlap 1246214 AACTTGGAATAAAAA TCCC TAA AGGA ACTTCAAAGGAAGTT aq_1768 1245528 - 1246301 + | hypothetical protein dld1 1248016 - 1246568 - | D-lactate dehydrogenase leuS' 1248875 - 1248006 - | leucyl-tRNA synthetase beta subunit TERM 850 1248928 - 1248947 + H 73 -7.8 -3.84246 | overlap 1248931 AGTAAACTTTTAATT GGAGGGCT ACAG AGCCCTAC TTTGCTCCTTGGCAA TERM 851 1249439 - 1249421 - g 79 -8.2 -4.33146 | opp_overlap 1249421 1249420 ATAAAAAAGGATAAA CCTCTCTT TGA AAGAGAAG GCTTTAAAGTTTTGG hemD 1249334 - 1250086 + | uroporphyrinogen-III synthase TERM 852 1250616 - 1250629 + G 74 -3.8 -5.00138 | opp_overlap 1250616 AACGAAGAAGAAATA GTCC TTGCGC GGAC TTTTTGCTTTGACTG lpxC 1250094 - 1250942 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase aq_1773 1251639 - 1250899 - | hypothetical protein TERM 853 1251007 - 1251022 + g 73 -6.2 -4.35091 | GTTCTGCACTCCCCT TACCTT ATCA AAGGTA TTTCTTATAAGTCTT rpmA 1251717 - 1252013 + | 50S ribosomal protein L27 glnE 1254400 - 1252007 - | glutamate ammonia ligase adenylyl-transferase TERM 854 1254179 - 1254199 + g 70 -10.5 -2.61582 | opp_overlap 1254179, overlap 1254178 1254184 AAAGAAGTCATTTAA GGAAAGGTT TCC AGCCTTTCC CTTATCCGTGGAGTG TERM 855 1254785 - 1254768 - R 71 -4.9 -4.56597 | GGGCTCTTTTAAAAA CCTTCTT GAGG AAGAAAG CCAGGAGGAGGGAAC aq_1776 1255521 - 1254811 - | hypothetical protein infC 1256059 - 1255532 - | initiation factor IF-3 TERM 856 1256208 - 1256221 + r 82 -3.9 -5.44119 | CTCCCCAATTTCCTT TTGAA CTCC TTCAA TTTTTTTGAAATGAA fumB 1257410 - 1256565 - | fumarate hydratase TERM 857 1257285 - 1257298 + g 71 -4.5 -4.62872 | opp_overlap 1257272 1257269, overlap 1257272 1257269 1257285 AACCTCCCTTCCTAT GGGAG ACTC TTCCC TTTTTAAGGCTTCCT mdh1 1258395 - 1257388 - | malate dehydrogenase aco 1260371 - 1258392 - | aconitate hydratase TERM 858 1259749 - 1259765 + g 71 -8.7 -3.51708 | overlap 1259755 TTCGTTATGGTTGCC CTTTCCG GAA CGGAGAG TTCCTTTACCCCCTC trpC 1261197 - 1260424 - | indole-3-glycerol phosphate synthase mviB 1262650 - 1261151 - | 'virulence factor' homolog MviB TERM 859 1261985 - 1261973 - GR 76 -2.7 -5.28942 | opp_overlap 1261978, overlap 1261967 TAGCGTAAATAAAAA CTTCT TTA AAAAG GTTTTAATCTCTCTA aq_1790 1263800 - 1262655 - | hypothetical protein TERM 860 1262844 - 1262865 + g 74 -9.5 -3.37487 | overlap 1262843 ATCTTGAGCTACCTG TCTTGCCTT ATCA AAGGCAGGA TCTTTGAACATATCA TERM 861 1263095 - 1263108 + g 71 -8.1 -3.77196 | opp_overlap 1263073 GAGCCCTCACGATCA GGACG GGGT CGTCC TTTCCTACGTACTGA aq_1791 1264196 - 1263813 - | hypothetical protein TERM 862 1263842 - 1263854 + g 87 -6.3 -5.27335 | CTTCAATTTTCTTTT CTATC TCG GATAG TTTTTCTTTGAGGGC ntrC2 1265730 - 1264237 - | NtrC family transcriptional regulator TERM 863 1265482 - 1265467 - G 70 -10.4 -2.61582 | overlap 1265466 1265469 TACGTTAGGTATAAC GAGGGG AATC CCCCTC TGGAACACCTTACCC aq_1793 1266749 - 1265940 - | hypothetical protein TERM 864 1266850 - 1266840 - gH 73 -6.8 -4.17491 | opp_overlap 1266839 AGCAAACGTTGAAAA CTCC GCA GGAG GCTTTGGGATAACCA aq_1794 1266721 - 1267503 + | hypothetical protein aq_1795 1267500 - 1268042 + | hypothetical protein aq_1796 1268039 - 1269118 + | hypothetical protein aq_1797 1269493 - 1269101 - | hypothetical protein cphA1 1270521 - 1269541 - | beta lactamase precursor rhdA2 1271424 - 1270543 - | thiosulfate sulfurtransferase TERM 865 1271119 - 1271104 - G 70 -6.1 -4.21275 | opp_overlap 1271117 CCAAGCTACGTAAAA GGGGA TGAAAG TCCCC TCAGCGTCGTATAGA TERM 866 1271417 - 1271398 - G 71 -2.2 -5.12707 | GGAAAGTGTAAAAAA GAGTAA AAACAAAA TTACTC CTCTCATCTCAGAAC aq_1800 1271860 - 1271426 - | hypothetical protein TERM 867 1271494 - 1271513 + g 76 -8.6 -3.86822 | GCAAGAAAACTTCCT GTGCCTGA GGAG TCAGGTAC TTTCTGAAACCCTTC TERM 868 1271730 - 1271742 + g 70 -6.9 -4.11773 | ACGTTCATATTCTTA CCGTC AAG GGCGG TTTTCAGGAGTATTT aq_1802 1272345 - 1271857 - | hypothetical protein TERM 869 1272317 - 1272303 - G 77 -9.2 -3.85786 | AGTAAAAGATTGAAA GGGCGA TGA CCGCCC CGATCAGGAAAGCGA soxB 1274120 - 1272342 - | sulfur oxidation protein SoxB aq_1806 1274786 - 1274166 - | hypothetical protein aq_1807 1275602 - 1274799 - | hypothetical protein TERM 870 1275586 - 1275563 - G 76 -3 -5.23292 | overlap 1275565 TTACAGAAAAGAAAA GAGCCCCACT GAGG AGTGAGGCAA AAACTATTTTTCTCA TERM 871 1275584 - 1275565 - G 85 -10 -4.22673 | overlap 1275563 ACAGAAAAGAAAAGA GCCCCACT GAGG AGTGAGGC AAAAACTATTTTTCT aq_1809 1275948 - 1275616 - | hypothetical protein aq_1810 1276431 - 1275970 - | hypothetical protein TERM 872 1276310 - 1276322 + g 75 -9.1 -3.65812 | AGATGCTTCTTGAGT GCCTC TTC GAGGC TTATCTTAGCAAAAG trxA2 1276832 - 1276425 - | thioredoxin TERM 873 1277330 - 1277310 - g 80 -7.5 -4.53602 | overlap 1277312 GTTACAGCAAATAAA CACCTCCTC GCA GAGGAAGGG AAGGAGATTTTTGAA TERM 874 1277328 - 1277312 - g 76 -8.7 -3.8721 | overlap 1277310 TACAGCAAATAAACA CCTCCTC GCA GAGGAAG GGAAGGAGATTTTTG thrA 1277001 - 1278308 + | homoserine dehydrogenase aq_1814 1278313 - 1279044 + | hypothetical protein aq_1815 1279051 - 1279602 + | hypothetical protein ksgA 1280325 - 1279579 - | dimethyladenosine transferase TERM 875 1280146 - 1280160 + g 77 -5 -5.0133 | CATTTCCCTGTCTAG CTCTAT TAC GTAGAG TTTTTTCAGGGGATG purU 1280345 - 1281196 + | formyltetrahydrofolate deformylase TERM 876 1281818 - 1281804 - g 74 -3.6 -5.07567 | CTAGAGGGTAAAAAA GTTAAA AAA CTTAAC GCGGTTTACGAAATA nfeD 1281207 - 1282484 + | nodulation competitiveness protein NfeD aq_1822 1282506 - 1282994 + | hypothetical protein mglA2 1282996 - 1283421 + | gliding motility protein MglA aq_1824 1283539 - 1284606 + | hypothetical protein aq_1825 1284587 - 1285486 + | hypothetical protein aq_1827a 1287396 - 1286704 - | hypothetical protein alr 1285739 - 1286755 + | alanine racemase aq_1829 1287965 - 1287540 - | hypothetical protein TERM 877 1288073 - 1288047 - R 74 -4.5 -4.84914 | gap 1, opp_overlap 1288050, overlap 1288042 1288050 AGGTATAGAAGAAAA CAACCTTTTCCT GTAG AGGTAAAGG-TG TATGTAGATGAATAT TERM 878 1288071 - 1288050 - R 81 -7.3 -4.51787 | opp_overlap 1288050, overlap 1288042 1288047 TATAGAAGAAAACAA CCTTTTCCT GTAG AGGTAAAGG TGTATGTAGATGAAT rpsG1 1288880 - 1288398 - | 30S ribosomal protein S7 rpsL 1289270 - 1288884 - | 30S ribosomal protein S12 TERM 879 1289394 - 1289384 - gH 81 -5.4 -5.02231 | GAAAAATACTAAAAA CCTT AAA AAGG GAGCCCAACCACGTT purL 1289323 - 1291560 + | phosphoribosylformylglycinamidine synthase II TERM 880 1291689 - 1291673 - gT 72 -8.7 -3.59698 | opp_overlap 1291672 1291686 TTACCTGATATACAA CAAAGGC GTA GCCTTCG GTCTCCTTTCCGAAC dapF 1292801 - 1291962 - | diaminopimelate epimerase lsp 1291521 - 1292024 + | lipoprotein signal peptidase exbD 1292807 - 1293205 + | biopolymer transport ExbD aq_1840a 1293221 - 1293427 + | copper chaperone TERM 881 1294197 - 1294160 - g 93 -9.1 -5.08878 | AAGATAGAAATAAAA CCTGAGGACCTGAAGAT AGAA ACCTTCAGGGCTTCGGG AGCGGGAGGACAGTA prfB 1293461 - 1294582 + | peptide chain release factor 2 aq_1842 1295440 - 1294568 - | hypothetical protein aq_1843 1296496 - 1295462 - | hypothetical protein TERM 882 1295726 - 1295738 + g 72 -3.4 -4.90519 | ATCGGGAAACTTCTG GGAA AACAA TTCC TTCTTTTTTTGATTT aq_1844 1297172 - 1296612 - | hypothetical protein aq_1845 1297861 - 1297169 - | hypothetical protein aq_1847 1298218 - 1297865 - | hypothetical protein aq_1849 1298890 - 1298231 - | hypothetical protein TERM 883 1298362 - 1298374 + g 71 -4.1 -4.74285 | TTGTATCATCCAACT CGTAA ATT TTGCG TTTTATGTTGTCAAT TERM 884 1298899 - 1298878 - G 100 -4.5 -5.77734 | AAATAAAAATAAAAA GATAAGCTT TCAA AAACTCATC GGTTAAAGAAATCCA aq_1850 1299558 - 1298926 - | hypothetical protein ilvH 1300129 - 1299551 - | acetolactate synthase TERM 885 1301894 - 1301884 - g 77 -2.4 -5.38249 | ATTAATCACAAAAAA CGAC CTT GACG CGGTATCGCCCTTTT aq_1852 1300157 - 1302034 + | hypothetical protein TERM 886 1302517 - 1302532 + F 71 -6.2 -4.1472 | CTCCTTAGCATTTTA GGATAT TCAA ATATCC TTATATTTTTATGAT TERM 887 1302702 - 1302692 - g 74 -6.8 -4.40358 | ACGTAGCCTACAAAA TGGG CGA CCCA ACCCCAAAAGCAGCG aq_1853 1302595 - 1303248 + | hypothetical protein aq_1854 1303703 - 1303245 - | hypothetical protein TERM 888 1305222 - 1305233 + G 71 -2.2 -5.12707 | ATTTGACTCACTAAA GGAG ACTT TTCC TTTTTTAGAGTTTGA dnaX 1303882 - 1305303 + | DNA polymerase III gamma subunit TERM 889 1305641 - 1305627 - g 70 -2.8 -4.91473 | overlap 1305628 1305634 1305635 TAAGCTAAAAACAAA CCTG AAACCCG CAGG GGACCAGCCGAAAGC TERM 890 1305727 - 1305704 - g 71 -4.5 -4.67697 | GCGTAAAAGAACAAA CACTTCTCG GAGTCA CGGGAAGCG GAAAGACTTTTACTC TERM 891 1306547 - 1306521 - g 72 -5.8 -4.59081 | opp_overlap 1306510, overlap 1306510 1306522 1306524 CAAAGGGATAGAAAA CTACTCCCGTTA CTT TGACGGGAGAAA ACCCGGAGAGCCACC TERM 892 1306544 - 1306524 - g 72 -9.7 -3.22496 | opp_overlap 1306510, overlap 1306510 1306522 1306521 AGGGATAGAAAACTA CTCCCGTTA CTT TGACGGGAG AAAACCCGGAGAGCC uvrB 1305589 - 1307580 + | excinuclease ABC subunit B aq_1857 1307948 - 1307598 - | hypothetical protein aq_1858 1308165 - 1308794 + | flagellar hook assembly protein flgE 1308798 - 1310246 + | flagellar hook protein FlgE TERM 893 1310467 - 1310438 - g 80 -5.7 -5.16206 | AAAGGAAGAGAAAAA GGAGGAAAAAGCT CCAA AGGTTGCTCCTCC CGAAGTTGGCATTAT fliL 1310298 - 1310783 + | flagellar biosynthesis FliL aq_1861 1310860 - 1311888 + | hypothetical protein TERM 894 1311912 - 1311897 - T 89 -11.8 -3.74781 | opp_overlap 1311892 1311890 AAAGTAAATTTTAAA GCCCCC TTGC GGGGGC AGGAAGATTTTTAGA aq_1862 1313080 - 1311923 - | hypothetical protein TERM 895 1313285 - 1313304 + G 77 -2.2 -5.38958 | overlap 1313283 GACGACCGTTCCTTT GTATTTTA TATA TACAATAC TTTTTCTTTCTCGGT kch 1313240 - 1314607 + | potassium channel protein TERM 896 1315236 - 1315223 - f 84 -6.7 -4.92783 | opp_overlap 1315223 1315221 AAGGGACTACAAAAA CGTCT ATAA AGACG TAATTTTACTGAAGA asd 1315363 - 1316385 + | aspartate-semialdehyde dehydrogenase TERM 897 1316665 - 1316650 - g 74 -8.2 -4.0492 | overlap 1316638 GAACGTTTACAGAAA CCCCGC ACAC GCGGAG GAAGTCATAAAGGAA aq_1869 1316399 - 1316812 + | hypothetical protein TERM 898 1316800 - 1316816 + F 83 -5.1 -5.24291 | overlap 1316784 CATAGGGGTAGAAGC GGGCT ACCTCTG AGCCC TTTTCTTTTAGTTTT TERM 899 1318114 - 1318104 - g 80 -6.8 -4.85545 | opp_overlap 1318103 AGTAAAGGAAGAAAA CCAG ACT CTGG CTTCAATTACCTTCC secA 1316869 - 1319823 + | preprotein translocase subunit SecA pmbA 1319839 - 1321164 + | peptide maturation TERM 900 1322700 - 1322687 - g 81 -3.1 -5.39905 | overlap 1322688 ATTAAAGAAGAAAAA CCAGA AATG TCTGA AATTAAAGAAAAGAC aq_1873 1321781 - 1323004 + | hypothetical protein TERM 901 1323158 - 1323144 - g 71 -4.3 -4.6635 | opp_overlap 1323144 AAATTCTGAAGAAAA GGAAA GATAT TTTCC TTATCGGAATAGACA aq_1875 1323017 - 1323901 + | hypothetical protein TERM 902 1324369 - 1324355 - g 85 -7.8 -4.67904 | CACCAAGCTCAAAAA CCCCAG CCT CTGGAG GTTAAAGCATGATTC rplM 1323947 - 1324381 + | 50S ribosomal protein L13 rpsI 1324378 - 1324821 + | ribosomal protein S09 TERM 903 1325307 - 1325288 - g 73 -10 -3.06815 | ACTTCTGGCAATATA CCCCTTCC TCAA GGAAAGGG TGGGAATAGAGAGTG argC 1324806 - 1325828 + | N-Acetyl-gamma-glutamylphosphate reductase dnaN 1325853 - 1326944 + | DNA polymerase III beta chain aq_1884 1327171 - 1327923 + | hypothetical protein sbcD 1327901 - 1329040 + | ATP-dependent dsDNA exonuclease mesJ 1329030 - 1329983 + | cell cycle protein MesJ sucD1 1331073 - 1329967 - | succinyl-CoA ligase alpha subunit nadA 1331127 - 1332095 + | quinolinate synthetase tsnR 1332814 - 1332092 - | rRNA methylase aq_1891 1333930 - 1332824 - | hypothetical protein TERM 904 1333530 - 1333558 + g 83 -5.9 -5.31456 | overlap 1333531 AAGGGCACGTCCAGT TCTTCCAGAAAGG TTA CCATTCCGGAAGC TTTTTTATCCCTTAA TERM 905 1333531 - 1333557 + g 79 -9.4 -3.77789 | overlap 1333530 AGGGCACGTCCAGTT CTTCCAGAAAGG TTA CCATTCCGGAAG CTTTTTTATCCCTTA ilvE 1334855 - 1333920 - | branched-chain amino acid aminotransferase aq_1894 1334770 - 1335483 + | hypothetical protein TERM 906 1335832 - 1335814 - g 70 -9.6 -2.84581 | overlap 1335813 GAAGGTACGAAGAAG CCCTGAAG TAC CTTCAGGA AGCGGCAAACGACGA aq_1896 1335480 - 1336508 + | hypothetical protein folD 1337356 - 1336481 - | methylenetetrahydrofolate dehydrogenase dmt 1338308 - 1337340 - | dolichol-phosphate mannosyltransferase aq_1899a 1338336 - 1338842 + | hypothetical protein TERM 907 1339107 - 1339095 - g 82 -7.7 -4.50661 | AACGTAGAACTAAAA CCCTT TAT AAGGG AGGCTATCAAGCTTT aq_1899b 1338855 - 1339262 + | hypothetical protein TERM 908 1339534 - 1339524 - g 74 -6.8 -4.33248 | CAACCCGAGAATAAA CGAG GAA CTCG TAAATAAAAAGGAAT TERM 909 1340664 - 1340638 - g 88 -10.8 -4.19371 | overlap 1340639 GAAATTCTTAAGAAA GCTCCCCACAGG ACA CCCGTGAGGAGG ATAAAGGAGGCAGAA TERM 910 1340663 - 1340639 - g 89 -14.3 -3.109 | overlap 1340638 AAATTCTTAAGAAAG CTCCCCACAGG ACA CCCGTGAGGAG GATAAAGGAGGCAGA gcsP1 1339276 - 1340724 + | glycine dehydrogenase subunit 2 TERM 911 1341326 - 1341308 - g 70 -8.9 -3.15592 | overlap 1341307 AACTGGGAGTAAAAC TCGTGGA CAACC TCCACGA CATGTTAAGGGAAAT serA 1340752 - 1342353 + | D-3-phosphoglycerate dehydrogenase TERM 912 1342434 - 1342417 - g 86 -3.3 -5.60993 | CGCCTCATAAAAAAA CGCTCCC TGAA AGTAGCG GATGAACCCGTGTTT TERM 913 1342900 - 1342875 - g 71 -4 -4.78933 | opp_overlap 1342876, overlap 1342870 1342876 GGAAAACATAGAAAA GGAGGGAATA CCCCTT TACTCCCTCT TTAAACTCTCGGAAC umpS 1342372 - 1342923 + | uridine 5-monophosphate synthase hflX 1344032 - 1342920 - | GTP-binding protein HflX TERM 914 1345058 - 1345046 - g 70 -2.7 -4.91573 | AAAAGATATCAAAAA GTTCT TAG AAAAC TTAAACAAGGGTGAG aq_1909 1344366 - 1345295 + | hypothetical protein TERM 915 1345848 - 1345822 - g 83 -6.5 -5.15167 | GACGAGGAAGAAAAA CTCCTCAGCGA GATAA TCACCGGGGAG TTCGGCTCCGACAGG TERM 916 1346304 - 1346293 - g 73 -4.4 -4.84761 | overlap 1346279 AGACTTTTAGAAAAA TTCC CGCA GGAA AAAGTGAGATTTGAC aq_1910 1345378 - 1346493 + | hypothetical protein TERM 917 1347193 - 1347181 - g 82 -4.8 -5.28942 | opp_overlap 1347179 1347191 GAGTTTAAAGAAAAA CCCT ACTGG AGGG TCTCGGTTCTAGACA aq_1912 1346869 - 1348326 + | hypothetical protein TERM 918 1348418 - 1348408 - f 73 -6.8 -4.2828 | overlap 1348388 TTTGAGCGAGGAAAA GCTC GAA GAGC TGGCGGAATTTTTTA trxA1 1348671 - 1349090 + | thioredoxin TERM 919 1349116 - 1349130 + GF 100 -3.5 -5.86061 | TGGCGCATTAATCAC GGTAG TTTCC CTGCC TTTTTTTTACTCAAA TERM 920 1349540 - 1349554 + GF 71 -2.1 -5.1356 | overlap 1349541 1349543 GTAGTGGTAAAGCCG GGAGA AAGGG TTTCC TTTTTCTTCCTCAGG aq_1917 1349003 - 1350040 + | hypothetical protein era2 1350037 - 1351338 + | GTP binding protein Era fliP 1352058 - 1351339 - | flagellar biosynthesis protein FliP aq_1922 1353285 - 1352290 - | 3-dehydroquinate synthase aq_1923 1353310 - 1354200 + | hypothetical protein aq_1924 1354863 - 1354174 - | hypothetical protein hyuB 1356425 - 1354860 - | N-methylhydantoinase B TERM 921 1355565 - 1355592 + g 74 -7.6 -4.25056 | opp_overlap 1355552 1355549 1355565 1355564, overlap 1355549 TACCGCGTAGTAAAC CGCGGAAAGTGT TATA GCCCTTACCGCG TTTATTCCTCCCCTC TERM 922 1356711 - 1356695 - H 72 -10.1 -2.62616 | TCAGTTGGTAGAGCA GCGGCCT TCC AAGCCGC AGGTCGCGGGTTCGA TERM 923 1356976 - 1356965 - g 70 -5.8 -4.40732 | GAAAGGACAAAAGAA CACG TAAA CGTG GGAACAATAGGACAC tufA2 1356932 - 1358149 + | elongation factor Tu rpmG 1358160 - 1358312 + | ribosomal protein L33 secE 1358431 - 1358628 + | preprotein translocase subunit SecE nusG 1358625 - 1359371 + | transcription antitermination protein NusG rplK 1359386 - 1359823 + | ribosomal protein L11 TERM 924 1359940 - 1359925 - g 76 -5.4 -4.87133 | opp_overlap 1359935 ATCTCTTAAAGAAAA TGGAAG AAGT CCTCCA GAGAAGGTTTGACGA rplA 1359828 - 1360556 + | 50S ribosomal protein L1 rplJ 1360571 - 1361170 + | ribosomal protein L10 rplL 1361173 - 1361559 + | ribosomal protein L7/L12 TERM 925 1365192 - 1365182 - g 74 -3.2 -5.13344 | overlap 1365189 ATACGAAGAGAAAAA GGAA ACA CTCC TCAAGAGAAGGGATC rpoB 1361772 - 1366178 + | RNA polymerase beta subunit TERM 926 1366207 - 1366188 - g 71 -9.3 -3.39432 | opp_overlap 1366191, overlap 1366191 AAATGAGTGAAGCAA GAAGGGG TATCTT CCCCTTC TCAAAAATTAAATTG TERM 927 1366708 - 1366688 - g 70 -6.8 -4.11751 | overlap 1366678 ACCAAGTGGGTAAAA CTCCACGT GGTGA ACGAGGAG GAGTTTGAGGAGAAG rpoC 1366175 - 1370899 + | RNA polymerase beta prime subunit TERM 928 1370895 - 1370879 - T 70 -5.8 -4.46073 | opp_overlap 1370883 1370888, overlap 1370888 CTCGAAGAGAAGAAA GAACCC AAAGA GGGCTC TTAAGCCCTCTTCCC TERM 929 1370905 - 1370888 - T 90 -11.3 -3.91946 | opp_overlap 1370883 1370888, overlap 1370879 AAGAAAGAACCCAAA GAGGGCT CTTA AGCCCTC TTCCCTTTAAAAACC TERM 930 1370888 - 1370905 + T 85 -11.3 -3.27525 | opp_overlap 1370879 1370888, overlap 1370883 AAGAAAGAACCCAAA GAGGGCT CTTA AGCCCTC TTCCCTTTAAAAACC aprV 1372578 - 1370896 - | serine protease TERM 931 1372886 - 1372876 - g 79 -6.8 -4.62872 | opp_overlap 1372875 ATTAATTCTCAAAAA GAGC AGA GCTC CCTTTAAGGTTATTG aq_1952 1372613 - 1373650 + | hypothetical protein aq_1953 1374096 - 1373638 - | hypothetical protein rplS 1374064 - 1374528 + | 50S ribosomal protein L19 TERM 932 1374733 - 1374718 - g 81 -3.2 -5.39721 | TGAGGAGATAAAAAA CAAAGC CCTG GCTGTG GGAACGGCAGTTGTG rnhB 1374521 - 1375111 + | RNase HII aq_1956 1375890 - 1375108 - | hypothetical protein TERM 933 1375152 - 1375167 + g 75 -9 -3.64487 | opp_overlap 1375148 1375152 GCTGTGTTAAATCAA GGAAGG CATA CCTTCC TTCTTCAAACTCTCC TERM 934 1375167 - 1375152 - G 73 -9 -3.51232 | opp_overlap 1375152, overlap 1375148 GCTGTGTTAAATCAA GGAAGG CATA CCTTCC TTCTTCAAACTCTCC TERM 935 1376033 - 1376053 + r 72 -8.9 -3.29144 | opp_overlap 1376003 ATTTGAACCCGCGAC CTCCGGCTT GAC AGGCCGGCG TTCTGACCGGGCTGA aq_1958 1377250 - 1376132 - | hypothetical protein aq_1959 1377316 - 1377798 + | hypothetical protein thiD 1377795 - 1378562 + | HMP-P kinase fliR 1379325 - 1378549 - | flagellar biosynthetic protein FliR TERM 936 1378827 - 1378810 - G 72 -7.1 -4.10855 | overlap 1378813 AAAACTCTCGTAAAA GAAGTTT AAAA AAACTTC GGGGTTTAAGTAAAA fliQ 1379582 - 1379313 - | flagellar biosynthesis protein FliQ TERM 937 1380138 - 1380153 + r 91 -10.4 -4.61633 | GCCAAGGAGCCGGCT GGGGCT TTTT AGCCCC TTTTTAAAAGTATAT purH 1381698 - 1380178 - | phosphoribosylaminoimidazolecarboxamide formyltransferase aq_1964 1383000 - 1381711 - | hypothetical protein TERM 938 1382365 - 1382376 + g 77 -7.2 -4.30576 | GCCTTTCTTTACCCC CCCG ACCA CGGG TTTTACTAATGGGGC aq_1965 1383404 - 1383000 - | hypothetical protein aq_1966 1383993 - 1383388 - | hypothetical protein TERM 939 1383641 - 1383655 + g 70 -5.6 -4.43844 | overlap 1383643 CCGAGCCTTGAGAGT GCGGGT GGA ACCCCC TTTTGTAACTCGTAA polA 1384011 - 1385735 + | DNA polymerase I (PolI) TERM 940 1385927 - 1385917 - g 71 -2.4 -5.15381 | overlap 1385919 AAGATATGGAAAAAA GGGG AGA CCTC GGGAGAACTCCAGAA TERM 941 1386079 - 1386067 - g 73 -4.8 -4.60886 | opp_overlap 1386067, overlap 1386077 ATAGAAGGAAACAAA GTGG AAAAA CCAC TTCCCTTTGAAGTAC hisIE 1385746 - 1386363 + | phosphoribosyl-ATP pyrophosphohydrolase aspC1 1386624 - 1387808 + | aspartate aminotransferase tapB 1389505 - 1387805 - | type IV pilus assembly protein TapB TERM 942 1388876 - 1388896 + g 77 -9.8 -3.67967 | TATCCTGAACCTCAC CCTCAAGA CTTTC TCTTGAGG TTCTATATGTATGTC TERM 943 1389082 - 1389094 + g 71 -4.8 -4.55295 | opp_overlap 1389082 TCACTTTAGGGAACA GCTC ATCTA GAGC TTTATTTATAACGGA panB 1390295 - 1389498 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase aq_1974 1390643 - 1390299 - | hypothetical protein aq_1975 1390681 - 1391232 + | hypothetical protein TERM 944 1391600 - 1391621 + G 81 -2.3 -5.47218 | overlap 1391596 TACATATACTCTTCT GGTTCTG TAAAGGCT CAGAATC TTTTTTTCGGTCACA masA 1391225 - 1391896 + | enolase-phosphatase E-1 aq_1978 1391893 - 1392258 + | hypothetical protein fucA2 1392255 - 1392881 + | hypothetical protein TERM 945 1392957 - 1392977 + T 100 -5.5 -5.81412 | opp_overlap 1392957 CTATCTTGTTAATGA TTTCTAAGA AAT TCTCAGAAA TTTTTTTTACATCCC aq_1980 1394154 - 1393228 - | hypothetical protein TERM 946 1394675 - 1394658 - g 71 -4.8 -4.55209 | GATAGAGGAAATAAA GGCTCC GCCAAA GAAGCC GGGAAAGCCGCAGAA TERM 947 1394738 - 1394706 - g 85 -7.8 -4.61527 | gap 2 AAAAGTGGTGAAAAA GAAGCCCGAG-G-CTG TAT CAGTCTCTCAGGCTCC CGAAAAGGGGGATGT aq_1982 1394503 - 1395147 + | hypothetical protein imp2 1395158 - 1395952 + | myo-inositol-1(or 4)-monophosphatase aq_1985 1395949 - 1396539 + | hypothetical protein aq_1986 1397248 - 1396523 - | hypothetical protein aq_1987 1397649 - 1397248 - | hypothetical protein tolQ 1398268 - 1397654 - | TolQ-like protein aq_1989 1400833 - 1398272 - | hypothetical protein TERM 948 1399687 - 1399697 + gr 74 -5.4 -4.64657 | AGTACTCCCTGTCTC TGTC TTT GACA TTTTTGAGAATTTCA TERM 949 1400668 - 1400686 + gr 75 -8.2 -4.03413 | overlap 1400657 TTTGGAGAATTACCT CTCTCTTT CTG AAGGAGAG TTTATCTGGCGGGAT pgmA 1401446 - 1400808 - | phosphoglycerate mutase htpX 1402363 - 1401455 - | heat shock protein X aq_1993 1403027 - 1402380 - | hypothetical protein era1 1403916 - 1403011 - | GTP-binding protein Era aq_1996 1404668 - 1403979 - | hypothetical protein aq_1997 1404707 - 1405402 + | hypothetical protein TERM 950 1405469 - 1405459 - f 73 -5.4 -4.6575 | ATATAAATGACAAAA CCTT AAA AAGG AGGTAAAAGGGATGG fliC 1405481 - 1407037 + | flagellin TERM 951 1407181 - 1407166 - g 76 -2.6 -5.23016 | gap 1, overlap 1407157 1407167 AAACAATTCAAAAAA CCTTGAA AGC TTCA-GG AAGGAAATAAAGGAA TERM 952 1407382 - 1407356 - g 71 -4.5 -4.64952 | opp_overlap 1407356 AAGGATACAAATAAA GTAATCAGG CAAATTCCT CCCGATTAC CTTTTAGAACTAATG aq_2000 1407080 - 1407445 + | hypothetical protein TERM 953 1407670 - 1407639 - g 70 -5.4 -4.30448 | AAACTTAATTGAAAA TTTTAATCTTGAAA GTGC TTTAAAGACTAAAA AGGCTGACGTTTCTG TERM 954 1408647 - 1408621 - g 71 -9.4 -3.02856 | overlap 1408617 GACGAAAATATCAGA CTCCTTAGCCAG AGG CTGGTTCAGGAG GAACAAATACTTAAA fliD 1407448 - 1408773 + | flagellar hook associated protein FliD fliS 1408770 - 1409144 + | flagellar protein FliS aq_2004 1409903 - 1409442 - | hypothetical protein aq_2005 1410364 - 1409915 - | hypothetical protein TERM 955 1410067 - 1410079 + g 70 -6.3 -4.1964 | opp_overlap 1410067 AGTCCTCAAAGTAGA CTTTC AGT GAAAG TTTTAACCTGTTGAA rpsB 1411810 - 1410986 - | 30S ribosomal protein S2 aq_2009 1412879 - 1411902 - | hypothetical protein TERM 956 1412609 - 1412630 + g 78 -5.9 -4.90266 | TTCCGATAGGTCCAT CTCCTTCTA TTTT TAAAAGGAG TTTTTGGTTGGTACC aq_2011 1415712 - 1412896 - | hypothetical protein TERM 957 1414165 - 1414185 + g 76 -8.3 -3.90425 | overlap 1414180 GTCCTCTATTAATTT CTCCTGAAG GGT CTTGAGGAG TTCTTCGTTTGCGTA aq_2013 1415787 - 1416200 + | hypothetical protein flhB 1416211 - 1417263 + | flagellar biosynthetic protein FlhB hemG 1418564 - 1417254 - | protoporphyrinogen oxidase TERM 958 1418271 - 1418292 + g 86 -7.3 -5.08178 | TTCCACGGGCGACAT GGGAAGG GGAATTAA CCTTCCC TTTTTGTATATGTAT TERM 959 1418660 - 1418640 - H 71 -6.8 -4.07678 | overlap 1418644 TTTTAAAATACTAAA CAAAGCCC TTTTT GGGCTCCG GCTCCTTGGCAATTG TERM 960 1418656 - 1418644 - H 77 -6.2 -4.60648 | overlap 1418640 AAAATACTAAACAAA GCCC TTTTT GGGC TCCGGCTCCTTGGCA TERM 961 1419420 - 1419394 - g 100 -4.4 -5.99154 | GAGGAAACAAAAAAA CACAATCTGG CTCAATT CCCGACTGTG ATTGGAGGTGTTACC TERM 962 1419915 - 1419901 - g 91 -8.6 -5.0538 | TGGGATCCTAAAAAA GACTTC TAC GAAGTC CTGACATGGCAGCCC pstS 1419127 - 1420140 + | phosphate-binding periplasmic protein TERM 963 1420163 - 1420174 + G 71 -4.4 -4.70659 | opp_overlap 1420163 AAAGACAAGGTAATA GACA AGCT TGTC TTTTTAAGTCTGGGC pstC 1420127 - 1421089 + | phosphate transport system permease protein C TERM 964 1421642 - 1421668 + GF 72 -10.2 -2.71364 | opp_overlap 1421641 1421640 AGGTTATAAAAGACG TTTCCCTCTCTG TCG CAAAGAGGGGAA TACTTACGGGAGTAA TERM 965 1421857 - 1421842 - g 76 -6 -4.53303 | GACTGGCACAGAAAA GCGTGG GCTG CCTCGC TCATACTCACAATCG pstA 1421068 - 1421925 + | phosphate transport system permease PstA aq_2020 1421693 - 1422364 + | hypothetical protein tldD 1422407 - 1423621 + | TldD protein TERM 966 1425247 - 1425223 - g 72 -7.8 -3.88498 | CGGGGACATAGTAAA GGCTCTCGCA GCGGG TGCAAGTGCC GTAATGCTCGGGAAC guaB 1424165 - 1425637 + | inosine monophosphate dehydrogenase aq_2027 1426728 - 1425634 - | hypothetical protein TERM 967 1426350 - 1426365 + g 72 -3.2 -5.00616 | opp_overlap 1426350 AAATTCTCGCAAGCA GGGGAA TTTC TTCGCC TTTTTTGCCGAAGGG TERM 968 1426638 - 1426654 + g 70 -9.4 -2.84393 | opp_overlap 1426636, overlap 1426637 CCTTTCCTATTAACT GGGCGT AAAAG ACGCCC CTTTCCGTGTGTCCT aq_2028 1426749 - 1427258 + | hypothetical protein napA3 1427260 - 1428528 + | Na(+)/H(+) antiporter aq_2031 1429062 - 1428661 - | hypothetical protein infB 1429084 - 1431501 + | translation initiation factor IF-2 TERM 969 1431531 - 1431564 + GF 89 -11.7 -3.5362 | overlap 1431529 GTATACGAAAGCATT CAGGGGGAAGGTCTA CTTG TGGGCCTTCCCTCCG TCTTTATAAGACTTC aq_2035 1431465 - 1432124 + | hypothetical protein aq_2036 1432121 - 1432771 + | hypothetical protein TERM 970 1432782 - 1432763 - T 73 -7.8 -3.84451 | opp_overlap 1432763 1432763 1432762 TTTTTGAAAGGGAAA GGGGCTTA AACT TTAGCCCC CATTTGTTTTGCCTT atpD 1434204 - 1432768 - | F0F1 ATP synthase subunit beta atpG1 1435093 - 1434218 - | ATP synthase F1 gamma subunit TERM 971 1435424 - 1435407 - g 73 -6.2 -4.35339 | opp_overlap 1435421, overlap 1435408 ATAGGAATTAAGAAA CCCGCC GGAGAA GGCGGA AAGCTTTTCGGTTCA rplI 1435164 - 1435613 + | ribosomal protein L09 TERM 972 1436255 - 1436240 - g 80 -5.4 -5.07107 | overlap 1436241 1436242 TAAATTCGTAAAAAA CCTCCT TCCG AGAAGG GAAATCCTCGACGAG TERM 973 1436284 - 1436295 + G 71 -4.4 -4.64766 | opp_overlap 1436284 AGATAACTTACAAAT CGAT CGCC ATCG TTTTTCCGATATGGA hemX2 1435623 - 1436561 + | cytochrome c biogenesis protein aq_2044 1437729 - 1436551 - | hypothetical protein folC 1438966 - 1437734 - | folylpolyglutamate synthetase vacB 1438996 - 1441113 + | VacB/RNase II family 3'-5' exoribonuclease aq_2049 1441129 - 1441695 + | hypothetical protein flgG1 1441695 - 1442420 + | flagellar hook basal-body protein FlgG recG 1444795 - 1442417 - | ATP-dependent DNA helicase RecG TERM 974 1442453 - 1442467 + g 79 -5 -5.06451 | CATCTTGTCTCCGTA CTTCTT TAT GAGAAG TTTTTTAAGGTCCTG TERM 975 1442706 - 1442689 - G 71 -4.1 -4.82901 | opp_overlap 1442675 1442675 TGGTTTTTACAAAAA CCCTTAA TCTC TTTAGGG ACTCGTTCTTCTCGT TERM 976 1443274 - 1443295 + g 72 -5.9 -4.55287 | AGTGCGGGTAAAGTC CTTTTCCTT TCTC AAGGAGGAG TTTTCTCTGCATGAC TERM 977 1444636 - 1444651 + g 70 -6.2 -4.24002 | opp_overlap 1444635, overlap 1444622 1444625 TTTTCTTTTCAAAGG GAAGTT TGTC AACTTC TTTTAAGCTTTCCAG aq_2054 1448147 - 1444797 - | hypothetical protein TERM 978 1446104 - 1446128 + g 74 -2.2 -5.24129 | TTGTTGTTCCCACAC CTTTTGAG GGCGAAATA CTCAAGAG TTTTTTGTCCAGAAG TERM 979 1447867 - 1447880 + g 100 -2.5 -6.01725 | opp_overlap 1447867 TCCCGAATCGGAATA TTTTT CAGT AAAAA TTTTTTCTTTTTCTT aq_2056 1448791 - 1448156 - | hypothetical protein TERM 980 1448470 - 1448482 + g 81 -6.3 -4.91657 | TACCGCCTGCGGTGT GAACT CTG AGTTC TTTCTTTTCTTCCTT helX 1450410 - 1448818 - | DNA helicase TERM 981 1449834 - 1449845 + gH 83 -7.2 -4.7657 | GAGAAAGACCTCTCA CGGG TGTT CCCG TTTTTGCCCTTTTTA TERM 982 1450164 - 1450178 + gH 80 -6.4 -4.66833 | overlap 1450176 GCCTTTTTATGCATT CCACTA AAG TGGTGG TTTTTCCCGTTCCGG TERM 983 1450484 - 1450496 + Gr 81 -5.5 -5.06414 | TTGAACGCAGTGTTT CCGGA ACC TCTGG TTTTTCTTGCAAAGG aas 1450301 - 1450936 + | 2-acylglycerophosphoethanolamine acyltransferase aq_2059 1451556 - 1450915 - | hypothetical protein aq_2060 1452904 - 1451540 - | hypothetical protein TERM 984 1452143 - 1452166 + g 75 -9 -3.71213 | gap 1 TGTGTTTTTTTTTAC CTCGCCGTTTA AGT TAAA-GGCGAG TTTGGCATTCTGTGT TERM 985 1453042 - 1453032 - R 90 -3.2 -6.02919 | opp_overlap 1453041, overlap 1453034 TTATAAATAAAAAAA GAGT GGC ACCC CCGGCGGGATTTGAA aq_2063 1453548 - 1453189 - | hypothetical protein TERM 986 1453472 - 1453484 + g 76 -2.6 -5.24129 | opp_overlap 1453482, overlap 1453482 TAAACGGTTGCCTCT TCGG ATAAA CCGG TTTTTTCTAAAAAGC gltD 1454975 - 1453545 - | glutamate synthase small subunit gltD aq_2066 1455015 - 1455485 + | hypothetical protein aq_2067 1455362 - 1455835 + | hypothetical protein argB 1455909 - 1456727 + | acetylglutamate kinase TERM 987 1457586 - 1457571 - g 72 -5.4 -4.58685 | AAACTCGCCCAAAAA CCACAA ATCG TCGTGG CCAACAAAATAGACG obgE 1456740 - 1457771 + | GTPase ObgE TERM 988 1458449 - 1458435 - g 82 -10 -3.86822 | GAAGTTTGTGAGAAA CCTGGT TGA ACCAGG AGACAGGTGTCTGGA aq_2071 1457797 - 1458972 + | hypothetical protein TERM 989 1459914 - 1459901 - g 78 -5.9 -4.88405 | AATCTTCAAAGAAAA CGAGG GAAA CCCCG AAGTTATAGAAACAA aq_2073 1458969 - 1460126 + | hypothetical protein TERM 990 1460237 - 1460224 - g 70 -6.7 -4.12456 | AGACGATTCCCAAAA TCCAG AGCT CTGGA GAGAAGTTCTCGGTG murD 1460123 - 1461370 + | UDP-N-acetylmuramoylalanine-D-glutamate ligase TERM 991 1461363 - 1461373 + T 84 -6.8 -4.85599 | overlap 1461355 AAATATGGTTCACTC GGAC TTA GTCC TTTTTATAAACTCCC trpF 1461971 - 1461357 - | phosphoribosyl anthranilate isomerase snf 1461990 - 1463531 + | SNF family Na(+)/neurotransmitter symporter sppA 1463518 - 1464369 + | proteinase IV aq_2082 1464647 - 1466260 + | hypothetical protein hisC 1467310 - 1466246 - | histidinol-phosphate aminotransferase TERM 992 1466867 - 1466878 + g 95 -7.2 -5.4433 | opp_overlap 1466867, overlap 1466870 TGGGTAAGCAAAGTA CCCG AGAA CGGG TTTTTCTTTCTCTAT aq_2085 1468078 - 1467575 - | hypothetical protein aq_2086 1468415 - 1468059 - | hypothetical protein TERM 993 1468351 - 1468364 + g 90 -4.5 -5.49729 | opp_overlap 1468351 TCAACGAGGATCACA GCTTC CCTG GAGGC TTTTTTTAACTCCTT aq_2087 1468963 - 1468412 - | hypothetical protein aq_2088 1468992 - 1469498 + | hypothetical protein leuA2 1469552 - 1471126 + | 2-isopropylmalate synthase TERM 994 1471896 - 1471886 - g 72 -6.8 -4.2717 | opp_overlap 1471886 AGGAGCGGATGAAAA GGCT GCA AGCC TTATATGTAAAAAGG dsbC 1471392 - 1472108 + | thiol:disulfide interchange protein aspC2 1473573 - 1472329 - | aminotransferase TERM 995 1472359 - 1472370 + g 70 -5.8 -4.39002 | overlap 1472360 1472361 AGGTTCAAGTTTCCT CTCC TTCT GGAG TTTTCTGAAGGCTTT dksA 1473928 - 1473566 - | dnaK suppressor protein floX 1474504 - 1473947 - | flavodoxin aq_2098 1475360 - 1474521 - | hypothetical protein pepA 1476834 - 1475353 - | leucine aminopeptidase TERM 996 1477123 - 1477097 - g 72 -7.3 -4.06505 | overlap 1477101 TGAAGAGATTATAAA GAAAGAAAGGC CTGAC GCCCTCCTTCC CACGCTCGGAGGTCA TERM 997 1477119 - 1477101 - g 71 -4.5 -4.60949 | overlap 1477097 GAGATTATAAAGAAA GAAAGGC CTGAC GCCCTCC TTCCCACGCTCGGAG carB2 1476861 - 1478534 + | carbamoyl-phosphate synthase large subunit prmA 1478521 - 1479258 + | ribosomal protein L11 methyltransferase acs' 1479689 - 1479279 - | acetyl-coenzyme A synthetase c-terminal fragment acs 1481166 - 1479634 - | acetyl-coenzyme A synthetase TERM 998 1481348 - 1481366 + H 88 -8.2 -5.08255 | opp_overlap 1481348 1481347 1481350, overlap 1481357 AGCTCAAGACATAAC CATCGTTT TTA AAACGGTG TTTTATTTTAAAACT ssf 1481860 - 1483323 + | SSF family Na(+)/solute symporter TERM 999 1483537 - 1483555 + G 78 -6 -4.65446 | AGATAGACTTTCTAT CCGAAG GAGACAG CTTCGG TTTTATATCTCTAAT aq_2107 1483320 - 1485179 + | hypothetical protein aq_2108 1485176 - 1485808 + | hypothetical protein hemB 1485819 - 1486811 + | delta-aminolevulinic acid dehydratase TERM 1000 1487707 - 1487693 - g 70 -5.6 -4.34267 | opp_overlap 1487692 GGATATAACTTAAAA GCTCTC GGA GAGTGC GTAGTTATAACTCTG acuC2 1486808 - 1487740 + | acetoin utilization protein aq_2113 1488032 - 1488808 + | hypothetical protein eif 1490156 - 1488786 - | initiation factor eIF-2B alpha subunit rfaG 1491274 - 1490168 - | glucosyl transferase I TERM 1001 1491388 - 1491400 + r 70 -5.5 -4.31837 | overlap 1491397 TATTTGTATAACTTC TCCCG TTC TGGGA TTTCTTCCCTTTCTT purC 1492327 - 1491677 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1002 1491822 - 1491834 + g 77 -4.9 -4.89521 | ACGAGTAAAATTCCC TTTTC TTC GAAAA TTTTCTTTAAAATCT aq_2118 1492845 - 1492324 - | hypothetical protein thiL 1493725 - 1492805 - | thiamine monophosphate kinase hlyC 1494990 - 1493722 - | hemolysin homolog protein abcT11 1495876 - 1494959 - | ABC transporter TERM 1003 1495168 - 1495192 + gr 70 -5.7 -4.43877 | ACTTTGTGTAGGGGT GAAGGGGATTT TTA AGAACCTCTTC TTTCTTTCCCAGTTC TERM 1004 1495796 - 1495786 - GR 73 -6.8 -4.1399 | TTATGGAGAGAGAAA CCTC TTT GAGG GCGAAAAAATTCTTC hemN 1497248 - 1495878 - | coproporphyrinogen III oxidase TERM 1005 1498466 - 1498423 - g 80 -8.9 -4.08064 | gap 1, opp_overlap 1498432 1498448, overlap 1498432 AATCGCCCTTGAAAA CCTCGC-AAAGGGACAGGCG GTAAG CGCCCTTCCCTTTAGGGAAG GAGACATATTCTACA TERM 1006 1498456 - 1498432 - g 75 -9.2 -3.60818 | opp_overlap 1498432 1498448, overlap 1498423 TGAAAACCTCGCAAA GGGACAGGCG GTAAG CGCCCTTCCC TTTAGGGAAGGAGAC TERM 1007 1498748 - 1498738 - g 79 -6.8 -4.63486 | overlap 1498721 AGTTTTGGAAGAAAA CCTC GGG GAGG GAATAAACGAGGAGG uvrC 1497725 - 1499425 + | repair excision nuclease subunit C aq_2128 1499413 - 1499835 + | hypothetical protein sbf 1500938 - 1500045 - | sodium bile acid symporter family Na(+) dependent transporter fmt 1502318 - 1501407 - | methionyl-tRNA formyltransferase TERM 1008 1501797 - 1501813 + g 71 -4.3 -4.67168 | overlap 1501799 TCTTAGGGTGTTTAC GAGGAGT TTA GCTCCGC TTTTTGCGAGTTTTT panC 1503163 - 1502315 - | pantothenate synthetase aq_2134 1503157 - 1503528 + | hypothetical protein TERM 1009 1504050 - 1504028 - g 83 -6.4 -5.0538 | GTGGAGCTTAAAAAA TCCGTAAAAA GGG TTCTTACAGA GCTTCCGCAGGACAC aq_2135 1503518 - 1504153 + | hypothetical protein abcT12 1504146 - 1504907 + | ABC transporter TERM 1010 1505034 - 1505024 - gf 95 -3.2 -5.75538 | overlap 1505025 CGGAAAAAATAAAAA TCCC TAC GAGA GTATAGAAAAAGTAG aq_2138 1504917 - 1505540 + | hypothetical protein aq_2139 1505500 - 1506153 + | hypothetical protein aq_2140 1506439 - 1506134 - | hypothetical protein glyS 1506462 - 1508456 + | glycyl-tRNA synthetase beta subunit TERM 1011 1509550 - 1509539 - g 74 -3.6 -5.1523 | overlap 1509540 TTTACAAGATAAAAA CCCC TGAA GAGG AAAGGAAGAACAGGG ppsA 1508458 - 1511028 + | phosphoenolpyruvate synthase TERM 1012 1511599 - 1511625 + G 79 -2.5 -5.33405 | gap 2, overlap 1511612 1511619 AAATTCCTTTTGCGA TACTTTACGTTGA CTT TCA-CG-AAAGTA TTTTTCTTTACTACA aq_2144 1511025 - 1511921 + | hypothetical protein aq_2145 1511921 - 1512571 + | hypothetical protein TERM 1013 1514349 - 1514329 - g 76 -5.4 -4.87273 | AATACGGGACAAAAA CCCTTGAA GCCTT TTCATGGG AAATAGCTAACTTCC aq_2146 1512591 - 1514669 + | hypothetical protein pal 1515277 - 1514666 - | peptidoglycan associated lipoprotein gatC 1515575 - 1515859 + | glutamyl-tRNA (Gln) amidotransferase subunit C TERM 1014 1515960 - 1515945 - gf 79 -10.4 -3.5394 | AAACGTTTCGGTAAA GGGGCA GTTA TGCCCC TCAAATCCGTTGAAA recA 1515870 - 1516907 + | recombinase A TERM 1015 1517065 - 1517053 - gf 72 -3.4 -4.97159 | AAAAAGAAAAAAGAA CTTG AAGAA CAAG GGCAGGTTGACCTCT pilU 1516861 - 1517973 + | twitching mobility protein TERM 1016 1518407 - 1518391 - gf 83 -12.3 -2.52742 | overlap 1518359 1518358 1518390 1518388 AGGTTTTCATAACAG CCTCTCC TGA GGAGAGG GCAAAGAGAAGGTAC cmk 1517970 - 1518638 + | cytidylate kinase TERM 1017 1519022 - 1519034 + GF 73 -2.7 -5.08011 | TCGGGATTTTAAACG TTTAC GAT GTGAA TTTTTTACGGATTTT pgsA1 1518607 - 1519143 + | phosphotidylglycerophosphate synthase TERM 1018 1519712 - 1519723 + G 71 -4.4 -4.65895 | AAAGGCTCTATCTTC CTCA GCTT TGAG TTTTTACCTCGGCAG TERM 1019 1519945 - 1519970 + G 70 -5.5 -4.43477 | gap 1, opp_overlap 1519944, overlap 1519949 TTTCTTCGGTAAACG GTA-ACGTCACT TCA AGGGACGTATAC TTTTCCTTAGCTCCG recJ 1519140 - 1520756 + | single-strand-DNA-specific exonuclease RecJ aq_2157 1520800 - 1521225 + | hypothetical protein pcnB2 1522740 - 1521202 - | poly A polymerase aq_2159 1522790 - 1523365 + | hypothetical protein TERM 1020 1523786 - 1523774 - g 70 -6.3 -4.29432 | CAAACCCGAGGAAAA GTACA GGA TGTAC CCCCACCAGCTCTCG TERM 1021 1523873 - 1523856 - g 76 -7.7 -4.18018 | GTGTGTGAGCCAAAA CTCGTCC TTGC AGACGAG CCCACCACTGCTCTG abcT9 1523352 - 1524107 + | ABC transporter uraP 1524118 - 1524744 + | uracil phosphoribosyltransferase aq_2164 1525290 - 1524721 - | hypothetical protein TERM 1022 1525050 - 1525039 - G 76 -5.8 -4.76041 | TAGAGCCATTAAAAA GGTG GGAA CACC CTTGAGAAAAGCGTC aq_2165 1526034 - 1525297 - | hypothetical protein scbA 1526899 - 1526027 - | adhesion protein aq_2168 1528321 - 1526912 - | hypothetical protein TERM 1023 1528137 - 1528150 + g 100 -2.3 -5.92399 | GCGGGTGTAGGTTTC AAGGC TACC GCCTC TTTTTTCTTTTCTTC aq_2170 1528662 - 1529381 + | hypothetical protein aq_2171 1529365 - 1529856 + | hypothetical protein aq_2172 1529849 - 1530346 + | hypothetical protein aq_2173 1530315 - 1530749 + | hypothetical protein TERM 1024 1530942 - 1530931 - g 70 -7.2 -3.91488 | AAGGTTCGTAAAGAA CCCG AAAA CGGG TATAGAAATTTACGT ihfB 1530746 - 1531048 + | integration host factor beta subunit TERM 1025 1531593 - 1531583 - g 76 -4 -5.11063 | AGGACGGAAGAAAAA TACT CAT AGTA GGTGGTAAGGACACG aq_2175 1531150 - 1532115 + | hypothetical protein TERM 1026 1532339 - 1532324 - g 76 -2.5 -5.27023 | overlap 1532319 ATCCGAAAAAGAAAA CGTAG TCATTT CCACG GGAGGAGGACTCGGG TERM 1027 1532480 - 1532454 - g 71 -10.2 -2.82595 | opp_overlap 1532453, overlap 1532453 1532456 TGTAAGGACTCAAAG GAGAGACCCCTT TTA AAGAGACCTCTC GATGAGATAAAAAAC aroK 1532112 - 1532618 + | shikimate kinase thiG 1533389 - 1532586 - | thiazole synthase acrR2 1533662 - 1534240 + | TetR/AcrR family transcriptional regulator TERM 1028 1534286 - 1534269 - f 76 -7.1 -4.19735 | TTTCCTAAAATTAAA TATGACA AGTT TGTCATA TGGAGGTGGGCATGA moaE 1534286 - 1534750 + | molybdopterin converting factor subunit 2 TERM 1029 1535598 - 1535588 - g 74 -4 -4.99043 | CGTTGATAAAGAAAA CTTT ATT AAAG AAGTCTGGAAAGACA moaA 1534728 - 1535690 + | molybdenum cofactor biosynthesis protein A aq_2185 1536265 - 1535687 - | hypothetical protein sqr 1537641 - 1536349 - | sulfide-quinone reductase coxC 1537820 - 1538596 + | cytochrome c oxidase subunit III aq_2189 1538598 - 1539395 + | hypothetical protein coxB 1539398 - 1540108 + | cytochrome c oxidase subunit II coxA1 1540270 - 1541727 + | cytochrome c oxidase subunit I TERM 1030 1542226 - 1542212 - f 77 -10 -3.3785 | GTAACGGACGTAGAA CCCTTC CAG GAAGGG AAACTCATTAAACAC coxB2 1542278 - 1542535 + | cytochrome c oxidase subunit II coxA2 1542541 - 1544319 + | cytochrome c oxidase subunit I TERM 1031 1544427 - 1544404 - g 77 -7.4 -4.32201 | opp_overlap 1544403 1544406 1544424 CGAATGAAGCCAAAA CACTCGGAAC ATAC GTTCCAGGTG ATATTACCTTAGTGG aq_2194 1544316 - 1545014 + | hypothetical protein bacA 1545760 - 1544990 - | undecaprenol kinase TERM 1032 1545770 - 1545785 + r 71 -4.8 -4.49781 | TGTCATGGGTTATAT GATAAA GAAC TTTATC TTTTCTCCCTCTTTT aq_2196 1546519 - 1545764 - | hypothetical protein aq_2197 1547007 - 1546519 - | hypothetical protein mopB 1547212 - 1547580 + | hypothetical protein mopA 1547532 - 1549169 + | GroEL TERM 1033 1549176 - 1549188 + T 100 -10.5 -5.51046 | CTTGACTAATTCCAG CCCCC TCT GGGGG TTTTTTATCTATTTA aq_2203 1549831 - 1549193 - | hypothetical protein TERM 1034 1549461 - 1549451 - G 76 -4 -5.08088 | opp_overlap 1549458, overlap 1549458 AAGGTTTAAGAAAAA CTTA AAG TAAG AAGCTTCAGGGTTCT ymxG 1551092 - 1549833 - | processing protease TERM 1035 1551077 - 1551091 + g 73 -2.8 -5.0925 | opp_overlap 1551078, overlap 1551071 1551078 TTACAAGGAGTAAAA AGAGAA AGT TTCTCA TTTTTCCTTTTCCAC TERM 1036 1551090 - 1551078 - G 80 -6.3 -4.8269 | opp_overlap 1551077 1551071 1551078 TACAAGGAGTAAAAA GAGAA AGT TTCTC ATTTTTCCTTTTCCA SEQUENCE gi|10957041|ref|NC_001880.1| Aquifex aeolicus VF5 plasmid ece1, complete sequence (length 39456) aq_aa01 492 - 91 - | hypothetical protein aq_aa03 1140 - 1574 + | hypothetical protein aq_aa04 1711 - 2235 + | hypothetical protein TERM 1 3103 - 3086 - g 91 -11.3 -4.08216 | GGACTTCGCTGAAAA GTCCCTC ACGT GAGGGAC ACAATCTAAGCGGAG aq_aa05 2254 - 3174 + | hypothetical protein TERM 2 3569 - 3559 - f 100 -6.8 -5.60993 | TTCTGGATAAAAAAA GGGA AAA TCCC TAAGAAATTCTATAC TERM 3 3793 - 3774 - f 93 -8.6 -5.27335 | opp_overlap 3774 3773 TCCTTGAAAGAAAAA TTCCCCCT ATTT AGGGAGAA CTTGTTGTTTTGAGT TERM 4 3869 - 3883 + F 71 -5 -4.63527 | opp_overlap 3869 CTTTATCTATACAGA CAAGGA AAA TTCTTG TTTTTAGAGTAATAC TERM 5 3958 - 3977 + F 77 -10.8 -2.85602 | opp_overlap 3957 3956, overlap 3955 AATATTACCCAAAGG TTCTCCCT AATT AGGGAGAA TAAATTGTTTTTTTA TERM 6 4018 - 4050 + F 74 -4.2 -5.06585 | gap 1, overlap 4020 4046 TCTTCAACTTTTCAG GATT-TGTTCTCCCT ATAT AGGGAGAACTTAAAC TTTTTATCTACTTTA TERM 7 4491 - 4474 - g 70 -7.1 -3.92005 | overlap 4477 4478 ACAGACAAAGCTAAA GAACTTT TCAA AAAGTTC GAAAAAGACCTCATA TERM 8 4678 - 4656 - g 74 -7.8 -4.03174 | overlap 4664 AAAGGTAGCAAAGAA CGAAAGAATT CCG AATCCCTTCG GAACGCTAAAAAATG TERM 9 4681 - 4664 - g 80 -8.5 -4.17987 | overlap 4656 CAAAGAACGAAAGAA TTCCGAA TCCC TTCGGAA CGCTAAAAAATGACT aq_aa07 4111 - 5064 + | hypothetical protein aq_aa09 5877 - 6824 + | integrase protein aq_aa10 7395 - 7979 + | hypothetical protein TERM 10 8416 - 8442 + F 70 -8.8 -3.36492 | opp_overlap 8434, overlap 8418 AAGCCTTTTCCTGTT CAGTTCTGCTAA AAC TTAGCGGAACTA TTATCAAGTTCCCCA TERM 11 8418 - 8440 + F 82 -11.4 -3.25192 | opp_overlap 8434, overlap 8416 GCCTTTTCCTGTTCA GTTCTGCTAA AAC TTAGCGGAAC TATTATCAAGTTCCC TERM 12 8625 - 8647 + F 100 -15 -4.07678 | overlap 8620 AATGGGTTATGCGTA GTTCCGCTAA CTT TTAGCGGAAC TTTAGTCTTTTACAC aq_aa11 8785 - 9741 + | hypothetical protein aq_aa13 10818 - 10390 - | hypothetical protein aq_aa15 11410 - 11078 - | hypothetical protein aq_aa17 11814 - 12860 + | hypothetical protein aq_aa18 13616 - 12951 - | hypothetical protein TERM 13 13556 - 13566 + g 70 -5.4 -4.41348 | TCAACCCTGAGTTCA TTGC ACC GCAA TTTGTTTCCCAGACC TERM 14 15351 - 15339 - R 72 -9.1 -3.36785 | opp_overlap 15337 GGATATCCCAACGAA GGGGA GGT TCCCC GATGATGTGGGATGG TERM 15 15437 - 15407 - R 70 -9.7 -2.60723 | opp_overlap 15427, overlap 15406 GGAGTGTTAAGTAAC CTGTCCCATCTCC TACAT GGAGGTGGGAAAG CCCGCCCTGTGGTGC TERM 16 15491 - 15474 - R 79 -11.3 -2.71712 | overlap 15473 GGGTTTCGCTGAAAG GTCCCTC ACGT GAGGGAC ACAATCTAAGCGGAG aq_aa19 15958 - 15620 - | hypothetical protein aq_aa20 17431 - 16475 - | hypothetical protein aq_aa21 17567 - 18208 + | hypothetical protein TERM 17 18253 - 18240 - f 73 -9.5 -3.17075 | TTTCTTTCAAGTGAA GGGGC TTTC GCCCC TCAAAAAACTTTAAA TERM 18 18661 - 18639 - g 71 -4.8 -4.45386 | GAAGAAATGAAGAAA GCGGCAAGAA TAC TTCTCGACAC AATAGAGGAATTTCA aq_aa22 18282 - 18800 + | hypothetical protein TERM 19 18785 - 18816 + F 73 -2.4 -5.28414 | gap 1, opp_overlap 18785 18792, overlap 18786 18793 AAAAAGAACAGGACA GGAAAAAGAAAACTG AGT CAGTTT-CTTCTTCA TTTTTCTGTTTATTC aq_aa23 18855 - 19670 + | hypothetical protein aq_aa24 20048 - 19683 - | hypothetical protein TERM 20 21097 - 21117 + r 79 -5.4 -4.88222 | overlap 21095 TTTTCCCCTTTCCGC GAGGCCAT CGCCT ATTGCCTC TTTTTCAGTTTTCAT aq_aa25 22333 - 21713 - | hypothetical protein TERM 21 22825 - 22811 - R 75 -2.9 -5.28983 | opp_overlap 22811 TGTAAAACACAAAAA GAATA AGAAG TATTC CTTTATAGGACTTGG aq_aa26 24828 - 24247 - | hypothetical protein TERM 22 24558 - 24535 - GR 77 -9.6 -3.54129 | opp_overlap 24553 CATAGCCCTTTCAAA GTTCCCGTAA TAAT TTTCGGGAAC GGGAATTCCCTCGTT TERM 23 24675 - 24687 + gr 71 -4.9 -4.4572 | AGAGAGAATTGTTTG CTTTT CCT AAAAG TTTATTTACGCTCTT aq_aa27 25561 - 24782 - | hypothetical protein TERM 24 25425 - 25441 + gr 81 -2.2 -5.60993 | TTCTGAAACATTTCT GCGCTT TCTTC AACCGC TTTTTTTCTGACAAG aq_aa28 26196 - 25741 - | hypothetical protein TERM 25 26119 - 26137 + g 84 -7.4 -4.91573 | overlap 26124 TTTAATTTCCTCTTC GCCTATAC TAA GAATAGGC TTTTTAGTATCTTTT aq_aa29 27105 - 26335 - | hypothetical protein aq_aa31 27954 - 27142 - | hypothetical protein TERM 26 27650 - 27636 - G 74 -5.6 -4.7373 | CTACGGGAGCAAAAA CACTGG ATT CCTGTG AAGTGAAGGGATTCG TERM 27 28136 - 28151 + r 77 -4.8 -4.946 | opp_overlap 28138 TGATGCTCTCAATAT TATTTC AGGA GAAATA TTTTTACTCTTTGCT aq_aa32 28995 - 28405 - | hypothetical protein TERM 28 29385 - 29358 - H 77 -4.9 -4.89477 | opp_overlap 29359, overlap 29359 TCCTGAACAAGAAAA TCTACCACTTC CGGTTT GAAGTAGTAGT AATTAACAAGTCCTC TERM 29 29384 - 29359 - H 72 -8.4 -3.52963 | opp_overlap 29359, overlap 29358 CCTGAACAAGAAAAT CTACCACTTC CGGTTT GAAGTAGTAG TAATTAACAAGTCCT TERM 30 29604 - 29630 + H 74 -8.9 -3.61178 | gap 1, opp_overlap 29602 29601 29604 29606, overlap 29606 GAAAAAATAGAATTA G-AGTTCTCCTA TATA TAGGAGAACTAC TTTGAGCTCGCTAAA TERM 31 29606 - 29627 + H 82 -11.7 -2.92792 | opp_overlap 29604 29602 29601 29606, overlap 29604 AAAAATAGAATTAGA GTTCTCCTA TATA TAGGAGAAC TACTTTGAGCTCGCT TERM 32 29627 - 29606 - H 82 -11.7 -3.06845 | opp_overlap 29606 29604, overlap 29604 29602 29601 AAAAATAGAATTAGA GTTCTCCTA TATA TAGGAGAAC TACTTTGAGCTCGCT TERM 33 29845 - 29882 + H 100 -7.1 -5.53436 | opp_overlap 29853, overlap 29838 29853 TCAAGTTTTTGATTT TCAATATAGTTCTCCTA TATA TAGGAGAACTTTTGTGA TTTTTTCTATTCTGT TERM 34 29874 - 29853 - H 82 -11.7 -3.07895 | opp_overlap 29845 29853 TTGATTTTCAATATA GTTCTCCTA TATA TAGGAGAAC TTTTGTGATTTTTTC TERM 35 29853 - 29874 + H 100 -11.7 -4.76171 | opp_overlap 29853, overlap 29845 TTGATTTTCAATATA GTTCTCCTA TATA TAGGAGAAC TTTTGTGATTTTTTC TERM 36 29953 - 29925 - H 85 -11.2 -3.29144 | gap 1 TTAGTTTGGTCATAA GT-GGTTCTCCTA GAAC TAGGAGAACCGAC AAAGCAAAAAAATAG aq_aa34 30009 - 30965 + | hypothetical protein aq_aa35 31846 - 31205 - | hypothetical protein aq_aa37 33210 - 33650 + | hypothetical protein TERM 37 33758 - 33777 + F 75 -2.8 -5.22006 | overlap 33761 33772 AACTTCGCTTCTTAG TTCTCCTG AATT CGGGATAA TTTTTGTTGTCCTAG TERM 38 33901 - 33886 - f 76 -7.6 -4.30416 | ACGATTAACTTAAAA GATACG ATGA CGTATC AAAACGGTGTTGAAG TERM 39 34534 - 34520 - g 76 -2.9 -5.19251 | opp_overlap 34532 CAAGAGGAAGAAAAA TAGAT TATTC ATCTA TTACAGAAACTGTAG aq_aa38 33892 - 34854 + | hypothetical protein TERM 40 34910 - 34895 - T 73 -7.6 -3.96892 | opp_overlap 34894 AAGTTTTACCAGAAA GTCCTA TATA TAGGAC AACTTTTCTACAGAG TERM 41 34946 - 34925 - T 73 -10.3 -2.87881 | opp_overlap 34925 CAACTTTTCTACAGA GTTCTCATA TCGG TATGAGAAC TTTTGCGTTGTGAAC TERM 42 34925 - 34946 + T 90 -10.3 -4.3208 | opp_overlap 34925 CAACTTTTCTACAGA GTTCTCATA TCGG TATGAGAAC TTTTGCGTTGTGAAC aq_aa39 35933 - 35238 - | hypothetical protein aq_aa40 38037 - 37072 - | hypothetical protein