TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.715188 %AT, 1026219 nt, 6209 terms. Intergenic: 0.764528 %AT, H2T: 138578 nt, 982 terms; T2T: 45846 nt, 853 terms; H2H: 53097 nt, 1083 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|111074074|ref|NC_008273.1| Borrelia afzelii PKo plasmid cp30, complete sequence (length 30017) BAPKO_4000 63 - 632 + | hypothetical protein TERM 1 663 - 646 - T 89 -9.8 -3.61328 | opp_overlap 644 661 AGCAATATGTTTAAA GCCCCC AAATAA GGGGGC CAATATATTATTGGC BAPKO_4001 916 - 671 - | hypothetical protein TERM 2 785 - 795 + g 77 -5.4 -5.10064 | ATTTCCATTACATTT CTCA AGT TGAG TTTTTATGTGTTCAA BAPKO_4002 1367 - 1038 - | hypothetical protein BAPKO_4003 1568 - 1371 - | hypothetical protein BAPKO_4004 2457 - 1642 - | hypothetical protein TERM 3 2009 - 1994 - G 70 -5.4 -4.48987 | gap 1 CGGCCATAATCAAAA TCGGACG GTA CG-CCGA GTAATTGTTTAGGAA BAPKO_4005 3081 - 2569 - | hypothetical protein BAPKO_4006 3956 - 3078 - | hypothetical protein BAPKO_4007 4285 - 3953 - | hypothetical protein BAPKO_4008 4403 - 4564 + | hypothetical protein BAPKO_4009 4875 - 4795 - | hypothetical protein BAPKO_4010 4996 - 4877 - | hypothetical protein BAPKO_4011 5883 - 5038 - | hypothetical protein BAPKO_4012 6519 - 5887 - | hypothetical protein BAPKO_4013 7817 - 6513 - | hypothetical protein BAPKO_4014 8061 - 7825 - | hypothetical protein BAPKO_4015 8180 - 8058 - | hypothetical protein BAPKO_4016 8503 - 8186 - | hypothetical protein BAPKO_4017 8947 - 8519 - | hypothetical protein BAPKO_4018 10073 - 8961 - | hypothetical protein TERM 4 9828 - 9847 + g 84 -4.2 -5.79595 | ATTGAAAAAATTTGA CATTGCGG TTTT CAGCAGTG TTTTTTCTTTTCCAA BAPKO_4019 10623 - 10054 - | hypothetical protein BAPKO_4020 11006 - 10620 - | hypothetical protein BAPKO_4021 11377 - 10994 - | hypothetical protein BAPKO_4022 11832 - 11377 - | hypothetical protein TERM 5 11757 - 11769 + g 77 -6.3 -4.71426 | opp_overlap 11757 11755 CTAATAGCAATAACA CTTCA GAA TGAAG TTTTGTTACTAAAAG BAPKO_4023 12810 - 11851 - | hypothetical protein BAPKO_4024 13404 - 12832 - | hypothetical protein BAPKO_4025 14187 - 13429 - | hypothetical protein TERM 6 13635 - 13651 + g 72 -6.7 -4.16904 | opp_overlap 13638, overlap 13638 CTCCGCCAGCCTTGA TAATAAC CCC GTTATTA TTTATGTCTAATATT BAPKO_4026 14758 - 14195 - | hypothetical protein BAPKO_4027 15465 - 14770 - | hypothetical protein TERM 7 14961 - 14971 + g 88 -5.4 -5.59655 | opp_overlap 14961 14954, overlap 14954 CAACAGAAGAAGAAT TGCT ATT AGCA TTTTTTCTTAATTTG TERM 8 15477 - 15496 + r 70 -3 -5.46706 | gap 1, overlap 15477 15479 TCACTTTTTAACTCC TT-TTCTCA AAA TGAGAATAA TTTTTCTTTTAAAAT BAPKO_4028 16705 - 15482 - | hypothetical protein TERM 9 16085 - 16100 + g 70 -7.6 -3.33214 | overlap 16083 ACTTAAAGAAGTTGT TGCACT AGAG AGTGCA TCTTGTAGTTGGACT TERM 10 16598 - 16573 - G 78 -9.9 -2.50492 | opp_overlap 16570, overlap 16572 16570 CATTACGACCAATAC TCTCAAGAATA AGTC CATTCTTGAGA CAATCTTCTGCTACA TERM 11 16651 - 16637 - G 80 -5.8 -5.06103 | opp_overlap 16637 16639 ATAATTTCTAAAAAA TATAGA GTA TCTATA TAGTTCTAGTGAACT TERM 12 16785 - 16749 - R 88 -8.3 -4.90906 | opp_overlap 16753, overlap 16743 16782 GTATAATAGCAAAAA CTAATATTTTTGTCAAT AAA ATTTACAAAAATATTTG ATTGCCAAAGTGAAC TERM 13 16753 - 16781 + r 75 -7.7 -3.90291 | opp_overlap 16743 16749 AATAGCAAAAACTAA TATTTTTGTCAAT AAA ATTTACAAAAATA TTTGATTGCCAAAGT BAPKO_4029 18123 - 16771 - | hypothetical protein BAPKO_4030 18639 - 18154 - | hypothetical protein TERM 14 18825 - 18835 + G 71 -2.6 -5.42164 | opp_overlap 18825, overlap 18831 TGATTCAAAAACAAA TATT TAT AATA TTTTTATTATTTGTA BAPKO_4031 18809 - 19525 + | hypothetical protein TERM 15 19559 - 19533 - T 100 -8.8 -5.18643 | opp_overlap 19533 19536 19539 TTAACTAAAATAAAA CAACAAGACTGA TTG TTAGTCTTGTCG TTCATAATTTATGCT TERM 16 19533 - 19559 + T 77 -8.8 -3.35869 | opp_overlap 19533, overlap 19536 19539 TTAACTAAAATAAAA CAACAAGACTGA TTG TTAGTCTTGTCG TTCATAATTTATGCT TERM 17 19536 - 19556 + T 73 -9.1 -2.83674 | opp_overlap 19533, overlap 19533 19539 ACTAAAATAAAACAA CAAGACTGA TTG TTAGTCTTG TCGTTCATAATTTAT TERM 18 19665 - 19638 - T 95 -13 -3.48378 | opp_overlap 19638, overlap 19659 TAAATATTATTATAA GATTAGGTTTTA AATT TAAAACCTAATC TTTAGGCAAGTCAGC TERM 19 19638 - 19665 + T 95 -13 -3.54424 | opp_overlap 19638 19659 TAAATATTATTATAA GATTAGGTTTTA AATT TAAAACCTAATC TTTAGGCAAGTCAGC TERM 20 19671 - 19659 - T 70 -6.3 -4.35524 | opp_overlap 19638 19666, overlap 19638 GTTTTAAATTTAAAA CCTAA TCT TTAGG CAAGTCAGCCAAAAT BAPKO_4032 20169 - 19660 - | hypothetical protein TERM 21 20260 - 20274 + r 70 -4.3 -4.98461 | opp_overlap 20260 ATTTTTCATAATTTA TGCTT ACAAA AAGCA TTTCTTTTATTCTTT BAPKO_4033 20901 - 20281 - | hypothetical protein TERM 22 20716 - 20698 - G 78 -9 -3.1505 | opp_overlap 20697 ATCAGCTTGCATTAA TTCTTCAA CTT TTGAAGAA ACTTCTCCTCCAAGC BAPKO_4034 21477 - 20929 - | hypothetical protein BAPKO_4035 21910 - 22686 + | hypothetical protein TERM 23 22683 - 22671 - T 74 -6.3 -4.72386 | opp_overlap 22675 22680, overlap 22663 22680 TAAATTAGCCAAAAA TAGCT TAA AGCTA TAGATAACTATCTAT BAPKO_4036 23038 - 22691 - | hypothetical protein TERM 24 23104 - 23115 + r 70 -4.4 -5.03314 | TGTTTTGTTTTATTT TGCT AATA AGCA TTTTTTAAACCTCCC TERM 25 23156 - 23183 + r 76 -8.4 -3.73414 | GTTTTTTTAATTTTT TAGTGCCCCCAT TCAA AAGGGGACACTA TTTGCATATGCTATA BAPKO_4037 24496 - 23168 - | hypothetical protein TERM 26 23405 - 23415 + g 71 -4 -5.02357 | TTCTCTTTTTTTGTT TTCA TTT TGAA TTTTATTTAGTTCTA TERM 27 24624 - 24581 - R 87 -4 -6.34424 | opp_overlap 24583, overlap 24583 TTTGCAAAAAAAAAA TAGAGTTCAACTAAACTCTT TATA AAGAAATTAGTTAAACCCCC ACTATATTGGATTTA TERM 28 24622 - 24583 - R 93 -8.8 -4.82685 | opp_overlap 24583, overlap 24581 TGCAAAAAAAAAATA GAGTTCAACTAAACTCTT TATA AAGAAATTAGTTAAACCC CCACTATATTGGATT TERM 29 24782 - 24737 - R 82 -4.4 -5.63504 | gap 2, overlap 24741 AATTTTACAAAAAAA GTAAGACTTAACTAAATTCTCT TGTT AAAGAAC-TAGTTAAGTC-CAC CAAAATGTAACCTTT TERM 30 24779 - 24741 - R 79 -8.5 -4.08806 | gap 1, overlap 24737 TTACAAAAAAAGTAA GACTTAACTAAATTCTCT TGTT AAAGAAC-TAGTTAAGTC CACCAAAATGTAACC TERM 31 24852 - 24826 - R 76 -9.7 -2.91913 | opp_overlap 24824 24845 24845, overlap 24845 AATATAGAGATCATA TTTTGCAATAT TTATT ATATTGCAAAA ACAGTTTTTGCCAAG TERM 32 24894 - 24882 - R 70 -3.5 -5.36441 | GTTTTATACAAAAAA TTTTT GAA AAAAA TGAGGGCTTAGCCTG TERM 33 24942 - 24895 - R 81 -5.6 -5.41746 | AATTTTTGAAAAAAA TGAGGGCTTAGCCTGATTCTCT ACTA AAAGAATATAGCTATGCACTCA CTTAATTGGACTATA TERM 34 25138 - 25097 - R 79 -4.7 -5.60993 | opp_overlap 25080 25080 25097, overlap 25136 CTTTTTACAAAAAAA GAACTTATTTAAAGTCTTT TGTT AAAAAGTTCGAATAAGTTC TAATTTAGAATAGAG BAPKO_4038 25760 - 25236 - | hypothetical protein BAPKO_4039 26330 - 25773 - | hypothetical protein TERM 35 26343 - 26362 + r 78 -5.8 -5.20331 | CATCAAACCTCCTTA TTTGTCCA TTAC TGGATAAA TTTTATTTGTTATTT BAPKO_4040 27127 - 26372 - | hypothetical protein TERM 36 26991 - 26973 - G 71 -2.4 -5.4756 | opp_overlap 26975 26976, overlap 26976 AATTTGAATAAAAAA TAACTAGT TAT ACTAGCTT GTGGATCACTATCAA TERM 37 26988 - 26976 - G 77 -6.3 -4.81306 | opp_overlap 26976 26975, overlap 26973 TTGAATAAAAAATAA CTAGT TAT ACTAG CTTGTGGATCACTAT BAPKO_4041 27681 - 27103 - | hypothetical protein BAPKO_4042 28785 - 27691 - | hypothetical protein TERM 38 27924 - 27936 + g 74 -4.9 -5.04325 | GTGAATTTTCTTTTT TCAAT TCA ATTGA TTTTTCTAATTTACG TERM 39 28055 - 28065 + g 100 -5.4 -6.02345 | ATTTCCAATTGTTCA GGAT TGT ATCC TTTTTTTTCTAATTG TERM 40 28412 - 28439 + g 100 -15.8 -5.45652 | opp_overlap 28404 28416, overlap 28409 TCTATAAGGTAGTTA GACACTCTAGAT TTAA ATCTAGAGTGTC TTTTTTCTTGAAAGT TERM 41 28435 - 28416 - G 77 -9.4 -2.92389 | opp_overlap 28409 28412, overlap 28404 TAAGGTAGTTAGACA CTCTAGAT TTAA ATCTAGAG TGTCTTTTTTCTTGA SEQUENCE gi|111074118|ref|NC_008274.1| Borrelia afzelii PKo plasmid cp27, complete sequence (length 26533) BAPKO_5000 46 - 327 + | hypothetical protein BAPKO_5001 757 - 311 - | hypothetical protein BAPKO_5002 2192 - 843 - | hypothetical protein TERM 1 1941 - 1920 - G 71 -2.4 -5.42259 | opp_overlap 1891 1890 1887 TGATTTCCAAAAAAA TAAAAAAG TATTAT CTTTTCTA AGCTTTTCAATTACT TERM 2 2059 - 2071 + g 77 -2 -5.84011 | AGAATGGCTTTGTGA TTCT CTGCA AGAA TTTTTATTTTTTCTT TERM 3 2361 - 2394 + r 100 -17.1 -4.84017 | opp_overlap 2368 AATTATTTTATTGCC TATCAAAGAGCTATT TATA AATAGCTCTTTGATA TTTTTATCACAAGTT TERM 4 2387 - 2368 - R 84 -9.4 -3.73224 | opp_overlap 2361 TTATTGCCTATCAAA GAGCTATT TATA AATAGCTC TTTGATATTTTTATC celB 3758 - 2436 - | PTS system, cellobiose-specific IIC component TERM 5 2579 - 2566 - G 72 -3.7 -5.36441 | CCTGTAGACAAAAAA GCCGC AATA GGGGC AGGGGTTGTCCATGG TERM 6 3891 - 3836 - H 100 -11.8 -4.37502 | opp_overlap 3839 3840 3845 3865 3879 3881, overlap 3837 3838 3845 3864 3877 ATTATTATATCAAAA TCCTTATAAGATATATTTAAAATAAA ATTA TTTATTTTAAATATATCTTATAATAT AATATATTATAAGAT TERM 7 3890 - 3837 - H 100 -15.3 -3.21778 | opp_overlap 3839 3840 3845 3865 3879 3881, overlap 3836 3838 3845 3864 3877 TTATTATATCAAAAT CCTTATAAGATATATTTAAAATAAA ATTA TTTATTTTAAATATATCTTATAATA TAATATATTATAAGA TERM 8 3889 - 3838 - H 100 -16.6 -2.52585 | opp_overlap 3839 3840 3845 3865 3879 3881, overlap 3837 3836 3845 3864 3877 TATTATATCAAAATC CTTATAAGATATATTTAAAATAAA ATTA TTTATTTTAAATATATCTTATAAT ATAATATATTATAAG TERM 9 3839 - 3888 + H 100 -20.1 -2.93633 | opp_overlap 3838 3837 3836 3845 3864 3877, overlap 3840 3845 3865 3879 3881 ATTATATCAAAATCC TTATAAGATATATTTAAAATAAA ATTA TTTATTTTAAATATATCTTATAA TATAATATATTATAA TERM 10 3845 - 3882 + H 100 -14.7 -3.49114 | opp_overlap 3845 3838 3837 3836 3864 3877, overlap 3840 3839 3865 3879 3881 TCAAAATCCTTATAA GATATATTTAAAATAAA ATTA TTTATTTTAAATATATC TTATAATATAATATA TERM 11 3882 - 3845 - H 100 -14.7 -3.36518 | opp_overlap 3840 3839 3845 3865 3879 3881, overlap 3838 3837 3836 3864 3877 TCAAAATCCTTATAA GATATATTTAAAATAAA ATTA TTTATTTTAAATATATC TTATAATATAATATA TERM 12 3909 - 3877 - H 100 -13.9 -3.61356 | opp_overlap 3845 3839 3865 3879 3881, overlap 3845 3838 3837 3836 3864 ATTATTTATTTTAAA TATATCTTATAATAT AAT ATATTATAAGATATA TTAAACAATATAAAT TERM 13 3879 - 3907 + H 90 -12.1 -3.03771 | opp_overlap 3845 3838 3837 3836 3877 3864, overlap 3845 3839 3865 3881 TATTTATTTTAAATA TATCTTATAATAT AAT ATATTATAAGATA TATTAAACAATATAA TERM 14 3881 - 3905 + H 85 -10.3 -3.07522 | opp_overlap 3845 3838 3837 3836 3877 3864, overlap 3845 3839 3879 3865 TTTATTTTAAATATA TCTTATAATAT AAT ATATTATAAGA TATATTAAACAATAT celC 3961 - 4308 + | PTS system, cellobiose-specific IIA component celA 4317 - 4643 + | PTS system, cellobiose-specific IIB component TERM 15 5246 - 5233 - g 70 -2.3 -5.50723 | overlap 5237 CGAGGAAAAGAAAAA GAAGG CGTT CCTAC ACTAGAATCACACAG BAPKO_5006 4645 - 5742 + | hypothetical protein BAPKO_5007 6393 - 5764 - | hypothetical protein TERM 16 6779 - 6763 - g 77 -2.3 -5.83822 | TACATCGAAAAAAAA GGATT ACAAATA AATCC TGAAAGTATTTTAAT TERM 17 7494 - 7532 + G 79 -9.1 -3.49102 | opp_overlap 7498, overlap 7497 CACATTTGAAATATA TAAACCACTTCTTTTAA AATTC TTAAAAGAAGTGGATCA TTGTATAAAAAATAT TERM 18 7497 - 7529 + G 86 -10.8 -2.88822 | opp_overlap 7498, overlap 7494 ATTTGAAATATATAA ACCACTTCTTTTAA AATTC TTAAAAGAAGTGGA TCATTGTATAAAAAA TERM 19 7528 - 7498 - g 100 -15 -4.27886 | opp_overlap 7497 7494 TTTGAAATATATAAA CCACTTCTTTTAAA ATT CTTAAAAGAAGTGG ATCATTGTATAAAAA BAPKO_5008 6535 - 7563 + | hypothetical protein TERM 20 7608 - 7556 - f 95 -11.8 -3.57013 | gap 1, opp_overlap 7564 7600, overlap 7564 7600 AAAATATACAATCAA GTAGGT-AATATTCAAGTAAGCATA ATTT TATGCTTACTTGAATATTTATTTAC TAATAAAACTTTACT TERM 21 7599 - 7564 - f 100 -18 -3.1485 | opp_overlap 7564, overlap 7556 CAATCAAGTAGGTAA TATTCAAGTAAGCATA ATTT TATGCTTACTTGAATA TTTATTTACTAATAA TERM 22 7564 - 7599 + F 100 -18 -4.51743 | opp_overlap 7564 7556 CAATCAAGTAGGTAA TATTCAAGTAAGCATA ATTT TATGCTTACTTGAATA TTTATTTACTAATAA TERM 23 8175 - 8159 - g 79 -6.7 -4.65895 | TGTTTTAGGTAAAAA TATAAGT AAA ACTTATA AGAATTCTAGATTTT BAPKO_5009 7695 - 8633 + | hypothetical protein TERM 24 8735 - 8689 - g 100 -23 -4.72556 | opp_overlap 8694, overlap 8694 8731 TGAAAAATTAGAAAA CAAAATTATTTATCATACTAAA ATT TTTAGTATGATAAATAATTTTG AAGCAAAACCGAAAA TERM 25 8694 - 8730 + G 100 -17.1 -4.07568 | opp_overlap 8689 8694 AATTAGAAAACAAAA TTATTTATCATACTAAA ATT TTTAGTATGATAAATAA TTTTGAAGCAAAACC TERM 26 8730 - 8694 - g 100 -17.1 -5.22137 | opp_overlap 8694, overlap 8689 AATTAGAAAACAAAA TTATTTATCATACTAAA ATT TTTAGTATGATAAATAA TTTTGAAGCAAAACC BAPKO_5010 8633 - 9151 + | hypothetical protein BAPKO_5011 9127 - 9888 + | hypothetical protein TERM 27 9933 - 9875 - f 100 -31.8 -2.73123 | opp_overlap 9882 9885, overlap 9877 9885 9908 AAAATTTCTTAAGCA TACTTTCAAATTAGTTCCATATGGAACT AAT AATTCCATATGGAACTAATTTGAAAGTA TGCAATGGAGAAAAT TERM 28 9931 - 9877 - f 100 -30 -2.90571 | opp_overlap 9882 9885, overlap 9875 9885 9908 AATTTCTTAAGCATA CTTTCAAATTAGTTCCATATGGAACT AAT AATTCCATATGGAACTAATTTGAAAG TATGCAATGGAGAAA TERM 29 9923 - 9885 - f 100 -20 -3.60006 | opp_overlap 9882 9885, overlap 9877 9875 9908 AAGCATACTTTCAAA TTAGTTCCATATGGAACT AAT AATTCCATATGGAACTAA TTTGAAAGTATGCAA TERM 30 9885 - 9923 + F 100 -17.8 -3.59262 | opp_overlap 9885 9877 9875 9908, overlap 9882 AAGCATACTTTCAAA TTAGTTCCATATGGAACT AAT AATTCCATATGGAACTAA TTTGAAAGTATGCAA BAPKO_5012 9954 - 10523 + | hypothetical protein TERM 31 10552 - 10540 - T 74 -4.9 -5.13473 | opp_overlap 10529 10540 ACTACATTTAAAAAA TGTTT CAA AAACA CTTTACAAAAAATCA TERM 32 10592 - 10573 - T 71 -6.6 -4.03001 | opp_overlap 10576 CAAAAAATCAAAATA CTATATAA TAAT TTATATAG ATTGAGATGCAATGT TERM 33 10641 - 10658 + T 100 -11.3 -4.2928 | opp_overlap 10639 TTAGAATAATAAGTT GGCTACC TTAT GGTAGCC TTTGTCATTTTTATA TERM 34 10795 - 10754 - T 100 -7.7 -5.69793 | opp_overlap 10758 10762, overlap 10758 10762 ATAGGAAATAAAAAA CCAATAAAGATTATAAAAA TTAA TTTTTATAATCTTTATTTT CGATTGATTCAACCA TERM 35 10758 - 10791 + T 100 -12.9 -4.32201 | opp_overlap 10754 10758 10762, overlap 10762 GAAATAAAAAACCAA TAAAGATTATAAAAA TTAA TTTTTATAATCTTTA TTTTCGATTGATTCA TERM 36 10791 - 10758 - T 100 -12.9 -4.07772 | opp_overlap 10758 10762, overlap 10754 10762 GAAATAAAAAACCAA TAAAGATTATAAAAA TTAA TTTTTATAATCTTTA TTTTCGATTGATTCA TERM 37 10787 - 10762 - T 93 -9.3 -4.54301 | opp_overlap 10758 10762, overlap 10758 10754 TAAAAAACCAATAAA GATTATAAAAA TTAA TTTTTATAATC TTTATTTTCGATTGA TERM 38 10762 - 10787 + T 93 -9.3 -4.72188 | opp_overlap 10762 10758 10754, overlap 10758 TAAAAAACCAATAAA GATTATAAAAA TTAA TTTTTATAATC TTTATTTTCGATTGA BAPKO_5013 11270 - 10773 - | hypothetical protein TERM 39 11365 - 11410 + H 100 -13.1 -4.34789 | overlap 11350 11362 11366 11367 TAAAAAATTAATTTT TATTTCTTAATCTTATTTTTT AAAA AAAAAATAAGATTAAGAAAGG TTGTTTTCTAAATTA TERM 40 11366 - 11409 + H 100 -14.4 -3.19789 | overlap 11365 11362 11367 AAAAAATTAATTTTT ATTTCTTAATCTTATTTTTT AAAA AAAAAATAAGATTAAGAAAG GTTGTTTTCTAAATT TERM 41 11367 - 11408 + H 100 -17.9 -2.50789 | overlap 11366 11365 11362 AAAAATTAATTTTTA TTTCTTAATCTTATTTTTT AAAA AAAAAATAAGATTAAGAAA GGTTGTTTTCTAAAT TERM 42 11445 - 11475 + H 71 -7 -3.91506 | overlap 11443 11446 TACTATAGTCTGTCA ATCTTGTGAGTATT TTT AATACTCACAAAAC TATTTTTAGGAATCG TERM 43 11446 - 11474 + H 85 -10.5 -2.94422 | overlap 11445 11443 ACTATAGTCTGTCAA TCTTGTGAGTATT TTT AATACTCACAAAA CTATTTTTAGGAATC TERM 44 11609 - 11623 + H 87 -6.4 -5.29846 | opp_overlap 11602 11609, overlap 11602 TTATGAATCTTTAAA CCCTTG TTT TAAGGG TTTTTGTTTAGCCTT TERM 45 11634 - 11646 + H 73 -7.7 -3.65991 | AAGGGTTTTTGTTTA GCCTT TAC AAGGC TTGTATTAAAAAGAT TERM 46 12707 - 12689 - g 95 -7.6 -5.37593 | TTTTAAATGAAAAAA TTATTCTT GAA AAGAATAA TAAATATTATAAATC oppA-5 12028 - 13620 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 47 13651 - 13621 - T 100 -17.2 -4.09923 | AAGCCAATTAAATAA TTTATAGTCAGATC AAA GATCTGACTATAAA CAAAAATAAGAAATG TERM 48 13654 - 13698 + T 100 -11.9 -4.20834 | opp_overlap 13658, overlap 13658 13661 13665 ATCTGACTATAAACA AAAATAAGAAATGAATTTTTA AAA TAAAAATTCATTTCTTATTAA TTTAATTATTTTAGA TERM 49 13694 - 13658 - T 100 -17.1 -5.40464 | opp_overlap 13658 13654 13661 13665 GACTATAAACAAAAA TAAGAAATGAATTTTTA AAA TAAAAATTCATTTCTTA TTAATTTAATTATTT TERM 50 13658 - 13694 + T 100 -17.1 -3.66165 | opp_overlap 13658, overlap 13654 13661 13665 GACTATAAACAAAAA TAAGAAATGAATTTTTA AAA TAAAAATTCATTTCTTA TTAATTTAATTATTT TERM 51 13661 - 13691 + T 100 -14.4 -3.93148 | opp_overlap 13658, overlap 13658 13654 13665 TATAAACAAAAATAA GAAATGAATTTTTA AAA TAAAAATTCATTTC TTATTAATTTAATTA TERM 52 13665 - 13687 + T 93 -9.4 -4.54404 | opp_overlap 13658, overlap 13661 13658 13654 AACAAAAATAAGAAA TGAATTTTTA AAA TAAAAATTCA TTTCTTATTAATTTA BAPKO_5015 13800 - 13672 - | hypothetical protein guaB 15112 - 13901 - | inositol-5-monophosphate dehydrogenase TERM 53 14775 - 14787 + g 77 -6.3 -4.71708 | opp_overlap 14774 14775 GGTTCTTCTAAATAT TGCTT TGT AAGCA TTTTGGTTTCTTGTT guaA 16672 - 15137 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 54 16000 - 15977 - G 82 -9.6 -3.44146 | overlap 15978 15993 CTTTTTTATAAGTAA TGCACAGACT AAAG AGTCTGTGCC ACCAGAAAGCCCCAA TERM 55 15999 - 15978 - G 100 -13.1 -2.66274 | overlap 15977 15993 TTTTTTATAAGTAAT GCACAGACT AAAG AGTCTGTGC CACCAGAAAGCCCCA TERM 56 16785 - 16841 + H 100 -17.4 -3.05066 | opp_overlap 16791 16798 16827, overlap 16789 16789 16798 ATTAAGACAATGTTT GTAATATTTTAAATAATTTTTCAA TAAATCAAT TTGAAAAATTATTTAAAATATTAC TCTTGAAAAATTATT TERM 57 16789 - 16837 + H 95 -12.4 -3.36452 | opp_overlap 16791 16798 16827, overlap 16789 16785 16798 AGACAATGTTTGTAA TATTTTAAATAATTTTTCAA TAAATCAAT TTGAAAAATTATTTAAAATA TTACTCTTGAAAAAT TERM 58 16835 - 16791 - H 85 -10.6 -3.03338 | opp_overlap 16789 16789 16785 16798, overlap 16798 16827 ACAATGTTTGTAATA TTTTAAATAATTTTTCAA TAAATCAAT TTGAAAAATTATTTAAAA TATTACTCTTGAAAA ospC 16925 - 17563 + | outer surface protein C TERM 59 17623 - 17653 + T 85 -3.5 -6.23317 | gap 1, opp_overlap 17627 17629, overlap 17629 GAAAAATAAAGTCAA TATAGAGTCAAGAA GTAT TTCTTGGCTTT-TA TTTTTTTATTTTTCT TERM 60 17629 - 17648 + T 93 -7.2 -5.64328 | opp_overlap 17627 17629, overlap 17623 TAAAGTCAATATAGA GTCAAGAA GTAT TTCTTGGC TTTTATTTTTTTATT TERM 61 17952 - 17972 + T 95 -7.1 -5.96219 | TTTACAATTTAGTTT TTTAAAATT GCA AATTTTAAA TTTTTTTTATAAATA BAPKO_5019 19352 - 17997 - | hypothetical protein BAPKO_5020 20816 - 19461 - | hypothetical protein BAPKO_5021 21394 - 20891 - | hypothetical protein BAPKO_5022 21881 - 21369 - | hypothetical protein TERM 62 21717 - 21701 - GH 82 -5.2 -5.52909 | opp_overlap 21701 TAACATTTAAAAAAA CAGTAA ATTTA TTACTG GATTTATCTTTTTTA TERM 63 21785 - 21795 + gH 74 -2.6 -5.65177 | AATCTGCTCTTTCAA TTTT TTC AAAA TTTTTTTCTAAATCT TERM 64 22487 - 22471 - g 82 -5.3 -5.38348 | overlap 22464 AAAAAGAGTAAAAAA TTTTTAA AAA TTAAAAA TATAAAAAATAAAAT TERM 65 22523 - 22502 - g 73 -3.1 -5.51612 | gap 1 ATATAAAAAATAAAA TGGAAGCTAA TAT TTA-CCTCCA TAATACAGATAAAAT BAPKO_5023 21928 - 22623 + | hypothetical protein BAPKO_5024 23184 - 22633 - | hypothetical protein TERM 66 22782 - 22795 + g 71 -2.5 -5.4111 | opp_overlap 22782 CAGTTGGAAAATTTA TTTTT AATG AAAAA TTTTTTATAATTCTT BAPKO_5025 23286 - 24530 + | hypothetical protein BAPKO_5026 24926 - 24831 - | hypothetical protein TERM 67 26331 - 26310 - g 95 -11.7 -3.02782 | opp_overlap 26305, overlap 26330 AGATAATATTACATA TCTTGATGC ATGT GCATCAAGA TTAAGAGTTAATCTA malX-2 24925 - 26487 + | PTS system, maltose and glucose-specific IIABC component SEQUENCE gi|111114823|ref|NC_008277.1| Borrelia afzelii PKo, complete genome (length 905394) BAPKO_0001 1550 - 531 - | hypothetical protein BAPKO_0002 3013 - 1538 - | hypothetical protein TERM 1 1732 - 1780 + g 76 -8.5 -3.59252 | opp_overlap 1747, overlap 1747 GGAATCTTTTACTTC TGTCAACTGTTAAAATTAATGGA TTT TTCATTAATTTTAACACTTCCCA TGTTATTTGCTCAAC TERM 2 2580 - 2596 + g 70 -3 -5.33026 | overlap 2575 2575 GCTGGGGTTATCCCC TTTGGG AATTC TCCAAA TTTTTCTTTAAATTC TERM 3 3205 - 3181 - g 70 -8.1 -3.10622 | opp_overlap 3188, overlap 3188 AATATTCATTTAATA TTAAAAACTTT AAA AAAGCTTTTAA TGAGACGATATTTTC TERM 4 4285 - 4261 - g 88 -10.3 -3.38201 | overlap 4259 CAACATCTCTAAATA TTGAAAAAATT GCA AATTTTTTCAA CGCCAAAGTTTATAG TERM 5 4859 - 4837 - g 70 -4.8 -4.6902 | opp_overlap 4842, overlap 4839 TGAGAATCTCAAAAA CAGAACCCGT AAT AAGGGTTCTC AGTGAAGTTATTTAT TERM 6 4857 - 4839 - g 72 -7.4 -3.95535 | opp_overlap 4842, overlap 4837 AGAATCTCAAAAACA GAACCCGT AAT AAGGGTTC TCAGTGAAGTTATTT femD 3156 - 4946 + | phosphoglucomutase trsA 6069 - 5023 - | tryptophanyl-tRNA synthetase TERM 7 5800 - 5790 - G 76 -6.8 -4.60648 | AAAATATTAAATAAA GCTC AAA GAGC TCCGGTATGGCTGAT BAPKO_0005 7160 - 6072 - | hypothetical protein BAPKO_0006 8075 - 7218 - | hypothetical protein TERM 8 7913 - 7888 - G 70 -6.3 -4.24562 | opp_overlap 7882 7890, overlap 7882 7890 7912 AAAAAATGAGATAAA TATATCATTTC ATTA GAAATGATATT ATAACCGTTTTGATT TERM 9 7911 - 7890 - G 80 -8.9 -3.68627 | opp_overlap 7882 7890, overlap 7882 7888 AAAATGAGATAAATA TATCATTTC ATTA GAAATGATA TTATAACCGTTTTGA TERM 10 7890 - 7911 + g 79 -8.9 -3.36518 | opp_overlap 7882 7890 7888, overlap 7882 AAAATGAGATAAATA TATCATTTC ATTA GAAATGATA TTATAACCGTTTTGA BAPKO_0007 8184 - 8954 + | hypothetical protein BAPKO_0008 8959 - 9963 + | hypothetical protein TERM 11 10121 - 10097 - g 73 -8.7 -3.05616 | overlap 10096 CAGCATTATAGAAAG TTTAGCTGGAA AAT TTGCAGCTAAA GAATCTTTAATCAAA BAPKO_0009 9960 - 10334 + | holo-acyl-carrier protein synthase, putative TERM 12 10553 - 10539 - g 70 -6.4 -4.12456 | ATAGTATGTCCAAAA TGCTAC TTT GCAGCA TTCCCAAGCGAATTT BAPKO_0010 10338 - 11177 + | hypothetical protein TERM 13 11520 - 11508 - g 89 -6.3 -5.42198 | opp_overlap 11508 GCTCAAAAAAGAAAA TACAG TTA CTGTA TATTAAACAGCGATA truA 11178 - 11918 + | tRNA pseudouridine synthase A TERM 14 11958 - 11919 - g 73 -7.6 -3.75024 | opp_overlap 11924, overlap 11922 GTTTACTATGAATAA CAATATTTTAACTAAAAA ACTT TTTTTACTTAAAATATTA ACAAATAATATCGAA TERM 15 11955 - 11922 - g 72 -7.1 -4.00445 | opp_overlap 11924, overlap 11919 TACTATGAATAACAA TATTTTAACTAAAAA ACTT TTTTTACTTAAAATA TTAACAAATAATATC BAPKO_0012 11911 - 12510 + | hypothetical protein TERM 16 13832 - 13814 - g 77 -6.1 -4.7268 | overlap 13825 AAAGAGTTAAGAAAA TTTTTGC CAAAT GCAAAAA TTGCAAGAATAGATT priA 12503 - 14494 + | primosomal protein N udk 15114 - 14491 - | uridine kinase glpE 15488 - 15114 - | glpE protein TERM 17 16432 - 16418 - g 73 -2.9 -5.49569 | opp_overlap 16418 CAGGAACAGAAAAAA CTATA GTATT TATAG TAGTTCCAATAATGC TERM 18 16494 - 16522 + G 76 -9.1 -3.14132 | opp_overlap 16491 16512 AGTTGATCCAAATTG TTTCATTACTGTT ATT AACACTAATGAAA TTACTGGAGGCAAAA BAPKO_0016 15616 - 16590 + | hypothetical protein BAPKO_0017 17567 - 16587 - | hypothetical protein TERM 19 16673 - 16710 + g 95 -8.7 -5.02074 | opp_overlap 16670 16674 16699, overlap 16674 ACAAAAAAATAACAA ATCTTTTGGGAAATTCA GAAA TGAATTTCTTAAAAGAA TTTTTTCCAACATCA TERM 20 16709 - 16674 - G 88 -7.8 -4.89605 | opp_overlap 16674 16673, overlap 16670 16699 CAAAAAAATAACAAA TCTTTTGGGAAATTCA GAAA TGAATTTCTTAAAAGA ATTTTTTCCAACATC TERM 21 16674 - 16709 + g 95 -12.2 -3.60762 | opp_overlap 16670 16674 16699, overlap 16673 CAAAAAAATAACAAA TCTTTTGGGAAATTCA GAAA TGAATTTCTTAAAAGA ATTTTTTCCAACATC TERM 22 16941 - 16955 + g 81 -2.9 -5.84432 | TTTTTTACCTCTATC TTTAG AAACA CTAAA TTTTTTTCTATTATA BAPKO_0018 18086 - 17574 - | hypothetical protein TERM 23 17975 - 17941 - G 74 -5.1 -5.02323 | TCATGAGAAATAAAA TTGCCACTGGAAG TTAATTTTT CTTGCAATGGCAA ACTTTGGGCAATACT pfpB 19761 - 18094 - | diphosphate--fructose-6-phosphate 1-phosphotransferase BAPKO_0020 20881 - 19841 - | S-adenosylmethionine: tRNA ribosyltransferase- isomerase ruvB 21899 - 20856 - | Holliday junction DNA helicase B ruvA 22549 - 21959 - | Holliday junction DNA helicase BAPKO_0023 22619 - 23758 + | hypothetical protein BAPKO_0024 24504 - 23773 - | hypothetical protein folD 25410 - 24505 - | methylenetetrahydrofolate dehydrogenase BAPKO_0026 25557 - 26192 + | hypothetical protein TERM 24 26539 - 26520 - g 77 -2.9 -5.56263 | gap 1 AGCACAAAACAAAAA CGCAGAAC TAGAG GTT-TGCG AGTTAAATGGAAAAA BAPKO_0027 26200 - 27249 + | putative lipoprotein BAPKO_0028 27666 - 27235 - | hypothetical protein TERM 25 27379 - 27356 - G 75 -7 -4.23758 | opp_overlap 27356 27358, overlap 27374 ATCTTAGATCTAAAA TATAAATAAT TTAT ATTATTTATA TTAAAAATTCGACCT lepB-1 28291 - 27656 - | signal peptidase I TERM 26 27800 - 27778 - G 81 -2.9 -5.7946 | CGTTTAATAAAAAAA TTTCATTTT TTTTC AAAATAAAA CACTTAACCACTTCA TERM 27 28220 - 28200 - G 82 -2.7 -6.06723 | overlap 28207 28216 TTTGTGAAAAAAAAA TTTAATATT AAA AATGTTAAA ACATATTTTAAAAAA TERM 28 28226 - 28236 + g 71 -2.6 -5.43974 | opp_overlap 28207 28216 28226 AAATGTTAAAACATA TTTT AAA AAAA TTTTTCTTTGCTTTT lepB-2 29273 - 28293 - | signal peptidase I TERM 29 29820 - 29778 - g 100 -10.3 -5.79595 | opp_overlap 29778 29780 GGTGAAAATAAAAAA TATTAACGAAAATACAAAA TTAAT TCCTGTATTTTCATTAATA TCTAGTGAACTTAAA TERM 30 30101 - 30069 - g 75 -3.6 -5.4756 | gap 1, overlap 30070 AATGCTAACAAAAAA TGAGTCTTGGGTTAA AACA TTAACC-AAAACTCT AGACAATGAAAATAT TERM 31 30100 - 30070 - g 71 -7.1 -3.86909 | gap 1, overlap 30069 ATGCTAACAAAAAAT GAGTCTTGGGTTAA AACA TTAACC-AAAACTC TAGACAATGAAAATA TERM 32 30566 - 30550 - g 78 -4.5 -5.5074 | overlap 30551 GAACCGAACAAAAAA CCATTAA ATA TTAATGA AATATCAAAAAAAGT TERM 33 30772 - 30759 - g 70 -5.3 -4.56597 | opp_overlap 30769 TTCTTTCTTGAAAAA TTGGA GTTC TCCAA ACATTGGTTTTAGAT BAPKO_0031 29344 - 30807 + | hypothetical protein BAPKO_0033 31285 - 31133 - | hypothetical protein smpB 30810 - 31262 + | SsrA-binding protein BAPKO_0034 31880 - 31344 - | hypothetical protein parC 33828 - 31948 - | DNA topoisomerase IV subunit A TERM 34 32532 - 32516 - G 74 -6.7 -4.3255 | opp_overlap 32515 32516 TTTGCAAGCAATAAA TCAATAA AAT TTATTGA ATATTCTTTTATTGA TERM 35 33721 - 33705 - G 70 -5.2 -4.62783 | opp_overlap 33705 CATGCATTTCAAAAA GAGAAT GTATA ATTCTC CTTTGGACTGGTTTA parE 35627 - 33828 - | DNA topoisomerase IV subunit B plsC 36385 - 35648 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase BAPKO_0038 37917 - 36394 - | hypothetical protein BAPKO_0039 39432 - 37930 - | hypothetical protein TERM 36 38135 - 38116 - G 71 -4.4 -4.88407 | TGATTTAAGGAAAAA CAAATAAA CTTT TTTATTCG CTACAAAAGGCTTAG TERM 37 38349 - 38367 + g 76 -9 -3.06831 | opp_overlap 38345 38342 TTAGAAAATCATTTA GCTTATTT TCC AAATAAGC TTCAATAACACTTGG TERM 38 39060 - 39072 + g 79 -3.5 -5.626 | opp_overlap 39060 GCATTTCCTTAGAAA TATAA AAA TTATA TTTTTTTATCAAATC TERM 39 39358 - 39345 - G 74 -6.7 -4.39448 | AAACAATTAAAATAA GGGTA AAAA TACCC CACATACCAACTTTT cheR-1 39622 - 40479 + | chemotaxis protein methyltransferase TERM 40 40462 - 40509 + T 100 -19 -4.50159 | opp_overlap 40470 40473 40476, overlap 40463 TACATAATGCCTGCC ACTTACAAGAAGAATTAATAAT CATG ATTATTAATTCTTCTTGTAAGA TTTATTTAGATTAAA TERM 41 40463 - 40508 + T 100 -22.5 -3.29372 | opp_overlap 40470 40473 40476, overlap 40462 ACATAATGCCTGCCA CTTACAAGAAGAATTAATAAT CATG ATTATTAATTCTTCTTGTAAG ATTTATTTAGATTAA TERM 42 40501 - 40470 - T 100 -13.4 -3.35679 | opp_overlap 40463 40462, overlap 40473 40476 GCCTGCCACTTACAA GAAGAATTAATAAT CATG ATTATTAATTCTTC TTGTAAGATTTATTT TERM 43 40498 - 40473 - T 84 -9.3 -3.8211 | opp_overlap 40463 40462, overlap 40470 40476 TGCCACTTACAAGAA GAATTAATAAT CATG ATTATTAATTC TTCTTGTAAGATTTA phoU 41215 - 40544 - | phosphate transport system regulatory protein TERM 44 40816 - 40830 + g 77 -7.8 -4.20025 | CAGATAACATCTCTT TGGCTG TAT CGGCCA TTTCTCTTAAAGGTT BAPKO_0042 42260 - 41226 - | hypothetical protein TERM 45 41777 - 41805 + g 71 -8.2 -3.25491 | gap 1, opp_overlap 41794 ATAAATTCAAAGCCC TGGTGGCAACCTC TAAA GAGGTTACC-CCA TTAATACTATCCCTT BAPKO_0043 42658 - 42257 - | hypothetical protein BAPKO_0045 45134 - 42684 - | P115 protein TERM 46 43253 - 43269 + g 74 -8.1 -3.6393 | overlap 43251 ATACATAATCACCTA GATTGAT TTC ATCAATC TCTTTGTATAATAGA TERM 47 44420 - 44446 + g 93 -9 -4.72201 | opp_overlap 44420 44419 44423 44425, overlap 44439 CATTAATATCAAAAT TAATATTGAAAA GCT TTTTCAATGTTA TTGTTTTTTCTAAAG TERM 48 44439 - 44449 + g 74 -4 -5.25803 | opp_overlap 44425 44423 44420 44419, overlap 44420 ATTGAAAAGCTTTTT CAAT GTT ATTG TTTTTTCTAAAGCTT TERM 49 44669 - 44688 + g 70 -8 -3.0644 | overlap 44671 AAGATTTAAGATTTA CATTTCTT CCCA AAGAAATG TCTTCAACCTTCCCT rnhB 45227 - 45772 + | ribonuclease H TERM 50 45774 - 45757 - T 76 -4.3 -5.36441 | CCTTCATAGAAAAAA TTTTAAA CTAA TTTAAAA CATAAATAATAAAAA BAPKO_0047 46161 - 45790 - | hypothetical protein BAPKO_0049 46814 - 46695 - | hypothetical protein BAPKO_0050 46933 - 47607 + | hypothetical protein TERM 51 48163 - 48153 - g 71 -2.6 -5.5454 | overlap 48147 TTAAACAAATAAAAA TAAA ATC TTTA TGGATCATACATCCA BAPKO_0051 47654 - 48373 + | hypothetical protein spoU 49038 - 48370 - | spoU protein TERM 52 49439 - 49427 - g 80 -4.1 -5.61881 | opp_overlap 49430 GTTTAAAAATAAAAA CCATT CCA AACGG AGATTTAAAAAGGTG ung 49108 - 49779 + | uracil-DNA glycosylase TERM 53 49809 - 49855 + T 79 -4.8 -5.49568 | gap 1, opp_overlap 49814 49815 49817, overlap 49815 49816 ATAATAGTTATGATT TAAAATTAGTTTACGTAAAGA AAAAAC TCTTTACGTAAAC-ACTTCTA TTTTTCTTTTAAATT TERM 54 49815 - 49850 + T 70 -6.3 -4.24385 | opp_overlap 49814 49815 49817, overlap 49809 49816 GTTATGATTTAAAAT TAGTTTACGTAAAGA AAAAAC TCTTTACGTAAACAC TTCTATTTTTCTTTT TERM 55 49849 - 49815 - T 75 -8.9 -3.12395 | gap 1, opp_overlap 49815 49809 49816, overlap 49814 49817 GTTATGATTTAAAAT TAGTTTACGTAAAGAA AAAA CTCTTTACGTAAAC-A CTTCTATTTTTCTTT TERM 56 49816 - 49849 + T 82 -9.8 -3.10971 | opp_overlap 49815 49814 49817, overlap 49815 49809 TTATGATTTAAAATT AGTTTACGTAAAGA AAAAAC TCTTTACGTAAACA CTTCTATTTTTCTTT TERM 57 49848 - 49817 - T 100 -14 -3.11922 | opp_overlap 49816 49815 49809, overlap 49815 49814 TATGATTTAAAATTA GTTTACGTAAAGAA AAAA CTCTTTACGTAAAC ACTTCTATTTTTCTT secG 50215 - 49853 - | preprotein translocase subunit SecG TERM 58 50060 - 50030 - G 78 -5.7 -4.97159 | gap 1 AAAAATAAAAAAGAA TGCTATGAAAAATC CAGT GATTTTT-ACAGCA ACACTTGAAGACTTT BAPKO_0055 50992 - 50231 - | triosephosphate isomerase pgk 52175 - 50994 - | phosphoglycerate kinase TERM 59 52104 - 52082 - G 83 -9.9 -3.15861 | TAGTATCGTCACTAA TGCTCCCCT CTTTT AGGGGAACA TTAAAATCACATCTT gap 53207 - 52200 - | glyceraldehyde 3-phosphate dehydrogenase BAPKO_0058 55252 - 53282 - | hypothetical protein TERM 60 54333 - 54321 - G 76 -4.1 -5.50499 | TTAGATGCAAAAAAA CTCTC CTC AAGAG CAATATTATAAAATT tlyC 56028 - 55249 - | hemolysin TERM 61 55796 - 55784 - G 73 -9.1 -2.74701 | overlap 55781 ATATTGTCAATAGTA CCGTG ATA CACGG GAAATCTTGAATGAC BAPKO_0060 56487 - 56029 - | putative metalloprotease trxA 56923 - 56570 - | thioredoxin BAPKO_0062 56997 - 57713 + | hypothetical protein BAPKO_0063 58771 - 57764 - | hypothetical protein fmt 59768 - 58821 - | methionyl-tRNA formyltransferase def 60262 - 59765 - | polypeptide deformylase BAPKO_0066 60322 - 60269 - | hypothetical protein BAPKO_0067 60981 - 60295 - | hypothetical protein TERM 62 60856 - 60870 + gr 76 -4.2 -5.27477 | overlap 60857 AATTAAAACATTTTT ACCCAA TTT TTGGGC TTTTTTAATTGCGAT TERM 63 60857 - 60869 + gr 73 -7.7 -3.75402 | overlap 60856 ATTAAAACATTTTTA CCCAA TTT TTGGG CTTTTTTAATTGCGA BAPKO_0068 62756 - 60978 - | peptidase, putative BAPKO_0069 62871 - 63779 + | hypothetical protein TERM 64 64329 - 64319 - g 76 -6.8 -4.45817 | AATCCAATAAAAGAA TGGG AAT CCCA TGGAAAAAAACTTCA TERM 65 64358 - 64340 - g 76 -3.9 -5.47218 | overlap 64341 TCCCATGGAAAAAAA CTTCACA AAAGA TGTGAAA TATTAAATGAACTTA BAPKO_0070 63764 - 65002 + | aminopeptidase II BAPKO_0071 65017 - 65478 + | hypothetical protein BAPKO_0072 65495 - 66967 + | hypothetical protein TERM 66 67622 - 67606 - g 70 -3.1 -5.36364 | TTAAAAACAGAAAAA TAAAAAT TAA ATCTTTA GAAAATGAATATCCT BAPKO_0073 66975 - 69293 + | hypothetical protein BAPKO_0074 69290 - 69850 + | hypothetical protein prfB 70134 - 70943 + | peptide chain release factor 2 TERM 67 71479 - 71460 - g 70 -2.2 -5.44119 | TTGACCTGAAAAAAA TAGAAAAT TATT ATTTACTA GAAATTAGCAACATC BAPKO_0076 70925 - 72334 + | hypothetical protein TERM 68 72400 - 72390 - g 71 -2.6 -5.42259 | opp_overlap 72390 GCATTTTTAAAAAAA TAAA AAA TTTA TTTAAAAACAAAGAA ftsY 72371 - 73216 + | signal recognition particle-docking protein FtsY BAPKO_0078 73213 - 74241 + | hypothetical protein TERM 69 74769 - 74742 - g 100 -8 -5.68438 | overlap 74743 TGATGAAATAAAAAA CTTTATATCATT AGAA AATGATATAAAA AACTTTAAAATAAAA TERM 70 74768 - 74743 - g 87 -9.3 -3.99436 | overlap 74742 GATGAAATAAAAAAC TTTATATCATT AGAA AATGATATAAA AAACTTTAAAATAAA BAPKO_0079 74242 - 75495 + | hypothetical protein TERM 71 75543 - 75523 - g 75 -3.4 -5.38249 | overlap 75525 ATTAATTATAAAAAA TCTTTGTA AAGCA TACAAAAA AAATAAAACAAAAAT BAPKO_0080 75485 - 76177 + | ABC transporter, ATP-binding protein BAPKO_0081 76174 - 77427 + | hypothetical protein BAPKO_0082 78733 - 77438 - | hypothetical protein TERM 72 77703 - 77685 - G 83 -10.4 -2.80575 | AAAACTTCCATCACA GTATTTGC CTT GCAAATAC CAAAAGATTTTTTAA TERM 73 78610 - 78627 + g 71 -7.1 -3.73281 | opp_overlap 78609 TATTTTCAATATCAT TATCAGA AATA TCTGATA TTTCAATAATATTTT BAPKO_0083 79046 - 78726 - | hypothetical protein TERM 74 79148 - 79129 - H 87 -6.6 -5.40474 | opp_overlap 79129 ATTTTTTTAAAAAAA TGATTATT AATT AATAATCA TTTTAAACTTTTCTT TERM 75 79129 - 79148 + H 73 -6.6 -4.30559 | opp_overlap 79129 ATTTTTTTAAAAAAA TGATTATT AATT AATAATCA TTTTAAACTTTTCTT TERM 76 79480 - 79469 - g 82 -4.4 -5.69068 | TAAAAATAGAAAAAA CAAG AGAA CTTG TGAAAAATTTCATTA TERM 77 79692 - 79662 - g 71 -7.8 -3.5936 | opp_overlap 79662, overlap 79679 GGCAAATCTTGCAAA TTTAGCTAATCTAA CAA TTAAATTCGCTAAA TTTAATGAAATGGGA nifS 79231 - 80499 + | nifS protein TERM 78 80568 - 80530 - f 100 -7.8 -5.30448 | opp_overlap 80534, overlap 80534 AAATAAACATAAAAA CAAAGTTAATCAAAAA TCTTTCT TTTTTGATTAACTTTC ATTTCAGGATTAATA TERM 79 80564 - 80534 - f 91 -8.6 -5.0707 | opp_overlap 80534, overlap 80530 AAACATAAAAACAAA GTTAATCAAAAA TCTTTCT TTTTTGATTAAC TTTCATTTCAGGATT TERM 80 80534 - 80564 + F 79 -8.6 -4.06903 | opp_overlap 80534 80530 AAACATAAAAACAAA GTTAATCAAAAA TCTTTCT TTTTTGATTAAC TTTCATTTCAGGATT BAPKO_0085 80709 - 81137 + | hypothetical protein TERM 81 81768 - 81749 - gT 71 -6.5 -4.07993 | overlap 81747 CAAAGAGTAAAAAGA GCAATTG AAATAG CAATTGC TGGTGGACATAACAT TERM 82 81831 - 81816 - gT 70 -6.2 -4.14392 | opp_overlap 81818 CTGGAAGCGGCAAAA CACTTA GTAT TAAGTG TGCTCAATCTATTCT BAPKO_0087 82698 - 82507 - | hypothetical protein BAPKO_0086 81134 - 82669 + | hypothetical protein TERM 83 82692 - 82671 - GT 95 -8.7 -4.85782 | opp_overlap 82674 TGCTTGAAAAATAAA GACCCCTAA AATA TTTGGGGTC TTGCAACTAAAATTC ldh 83649 - 82699 - | L-lactate dehydrogenase TERM 84 82780 - 82794 + g 71 -7.2 -3.74658 | overlap 82764 TTTAGGACTTATCTT GAAGTT TAA AACTTC TTTGACTCCTTCTTT lepA 85575 - 83770 - | GTP-binding protein LepA BAPKO_0090 86571 - 85609 - | hypothetical protein TERM 85 85684 - 85672 - G 74 -6.3 -4.60977 | opp_overlap 85672 85667 AATATAAGGAGAAAA TCTTG GTG CAAGA TCTACTATTAATTTC BAPKO_0091 87092 - 86658 - | V-type ATP synthase subunit K BAPKO_0092 88962 - 87109 - | V-type ATP synthase subunit I TERM 86 88564 - 88520 - G 70 -6.1 -4.16016 | opp_overlap 88520 88522 88554, overlap 88554 GGATCTCTTAATAAA TTTTTATATTCACTTTTTTGA ATT TTAAAAAATTGAATATAAATA TTAGATTCTTTCAAC TERM 87 88520 - 88564 + g 73 -8.3 -3.33509 | opp_overlap 88520 88554, overlap 88522 88554 GGATCTCTTAATAAA TTTTTATATTCACTTTTTTGA ATT TTAAAAAATTGAATATAAATA TTAGATTCTTTCAAC TERM 88 88522 - 88562 + g 90 -10.9 -3.22938 | opp_overlap 88520 88554, overlap 88520 88554 ATCTCTTAATAAATT TTTATATTCACTTTTTTGA ATT TTAAAAAATTGAATATAAA TATTAGATTCTTTCA TERM 89 88619 - 88604 - G 72 -3.3 -5.28942 | opp_overlap 88615, overlap 88615 TATTCTAAAGAAAAA TTTCC CCAAAC GGAAA TCAAATTCCTTTCAT atpD 89545 - 88946 - | V-type ATP synthase subunit D TERM 90 89406 - 89430 + g 71 -7.3 -3.71645 | TCAAGATTTTTATTT TTGTAAGAATT CTC AATTCTAACAA TTTCCATATAAAGTT atpB 90852 - 89548 - | V-type ATP synthase subunit B TERM 91 90688 - 90725 + g 82 -9.5 -3.35813 | gap 1, opp_overlap 90693, overlap 90689 90693 ACCTCTTGTACCACC ATAAACTTGA-AGAGAAA CTT TTTCTCTATCAAGTTTAA TTACTTCGGCTAGAG TERM 92 90689 - 90724 + g 100 -13 -2.61274 | gap 1, opp_overlap 90693, overlap 90688 90693 CCTCTTGTACCACCA TAAACTTGA-AGAGAAA CTT TTTCTCTATCAAGTTTA ATTACTTCGGCTAGA TERM 93 90693 - 90720 + g 87 -9.4 -4.00348 | gap 1, opp_overlap 90693, overlap 90689 90688 TTGTACCACCATAAA CTTGA-AGAGAAA CTT TTTCTCTATCAAG TTTAATTACTTCGGC TERM 94 90720 - 90693 - G 87 -9.4 -3.99324 | gap 1, opp_overlap 90693 90689 90688 TTGTACCACCATAAA CTTGA-AGAGAAA CTT TTTCTCTATCAAG TTTAATTACTTCGGC atpA 92628 - 90874 - | V-type ATP synthase subunit A TERM 95 92213 - 92228 + g 82 -5.4 -5.47399 | overlap 92214 92223 CCTGCAATAACGCTA TCTCCA ACTT TGGAGG TTTTTTTAAAATTCC TERM 96 92223 - 92244 + g 74 -2.3 -5.61913 | overlap 92214 92213 92229 CGCTATCTCCAACTT TGGAGGTTT TTTT AAAATTCCA TTTTTTATCTTTGTT BAPKO_0096 93157 - 92615 - | hypothetical protein TERM 97 92646 - 92666 + g 91 -9.9 -4.20084 | opp_overlap 92646 GTTTTATCAATTAAA TTTTGACAA ATA TTGTCAAAA TTTTGAATACCTAAT TERM 98 92666 - 92646 - G 91 -9.9 -3.95584 | opp_overlap 92646 GTTTTATCAATTAAA TTTTGACAA ATA TTGTCAAAA TTTTGAATACCTAAT TERM 99 93175 - 93165 - R 71 -5.4 -4.7033 | opp_overlap 93163 93165 GAATCCAACACAAAA GTCT CCT AGAC TACTTTTATAATTTC BAPKO_0097 93769 - 93170 - | V-type ATP synthase subunit E TERM 100 93837 - 93827 - R 75 -4 -5.55664 | TTATTAGTAAAAAAA CTTT AAA AAAG CATACAATAATTTCT BAPKO_0098 94341 - 93955 - | hypothetical protein BAPKO_0099 96683 - 94347 - | DNA mismatch repair protein, putative TERM 101 94947 - 94965 + g 70 -7.6 -3.49924 | CTCCAAAACTTTTCT TGAATTTT TTA AAAATTCA TTCTGCTCATTTAAA TERM 102 95914 - 95944 + g 93 -3.4 -6.22802 | opp_overlap 95920 CTATGAACTTTACTA GAAAGATTTTGTAA AAT TTTCAAAATTATTC TTTTTTTTTCTAAAC TERM 103 96344 - 96354 + g 75 -5.4 -4.83169 | GAGCATTAAAATACT TGGT ATC ACCA TTTTTATCCAAAAAT TERM 104 96420 - 96438 + g 73 -4.6 -5.14626 | opp_overlap 96419, overlap 96419 AATATCTCTTAAATT TTCAATAG AAA CTCTTGAA TTTTCTTTTGATAAT BAPKO_0100 97596 - 96673 - | hypothetical protein murI 98378 - 97593 - | glutamate racemase TERM 105 99658 - 99644 - g 72 -5 -4.88786 | ATGAAAATAAATAAA GACAAT AAA ACTGTC AAAGGAATGGATGTA asnC 98540 - 99928 + | asparaginyl-tRNA synthetase BAPKO_0103 99951 - 100472 + | hypothetical protein BAPKO_0104 101062 - 100469 - | hypothetical protein TERM 106 100772 - 100762 - G 73 -5.4 -4.72986 | GACCCGTATCAAAAA TGTC ATC GACA AATAAAACCTTATCG TERM 107 101178 - 101156 - R 100 -8.5 -6.14618 | CATAAAACAAAAAAA GGGCTAAGA TCAAC TCTTAACCC AAAACTAAAACTTAC htrA 102617 - 101193 - | periplasmic serine protease DO map 103439 - 102684 - | methionine aminopeptidase TERM 108 103374 - 103396 + g 77 -2.9 -5.59357 | gap 1, opp_overlap 103380, overlap 103380 TAACAAAGTAAGCGC TAATAAGCTT GCTG AAGCTT-TTA TTTTTTTAATCTCAT TERM 109 103380 - 103391 + g 82 -4.4 -5.57888 | opp_overlap 103380, overlap 103374 AGTAAGCGCTAATAA GCTT GCTG AAGC TTTTATTTTTTTAAT BAPKO_0107 105099 - 103432 - | hypothetical protein TERM 110 104424 - 104434 + g 74 -4 -5.23765 | AAATATATGCAAGCT CTTT GAA AAAG TTTTTGTCTTCTTTA TERM 111 104509 - 104527 + g 74 -6.1 -4.45259 | opp_overlap 104509 104508 104506 TATATACAAAAGCAT TGCATTT ACTAA AAATGCA TTATTTTTAAGATTT nusB 105514 - 105101 - | transcription antitermination protein NusB BAPKO_0109 106561 - 105551 - | basic membrane protein TERM 112 106369 - 106379 + g 75 -5.4 -4.82901 | CTGCTATTAAAACTT GCAA AAC TTGC TTTTTCTCAGCAGCA fadA 107832 - 106639 - | acetyl-CoA C-acetyltransferase TERM 113 108304 - 108294 - g 71 -4 -5.1848 | AATTAATGGAAAAAA TTTC GGA GAAA TAGACTTGGGAATTG TERM 114 108429 - 108419 - g 75 -5.4 -4.98255 | TTCCAAGCATAAAAA GCTA TGA TAGC TACAATTACAGAGGC BAPKO_0111 107947 - 109311 + | hypothetical protein dnaB 110695 - 109328 - | replicative DNA helicase rplI 111220 - 110699 - | 50S ribosomal protein L9 rpsR 111527 - 111237 - | 30S ribosomal protein S18 ssb 111991 - 111542 - | single-stranded DNA-binding protein rpsF 112422 - 112003 - | 30S ribosomal protein S6 malX-1 114255 - 112561 - | PTS system, maltose and glucose-specific IIABC component TERM 115 112608 - 112620 + g 79 -3.4 -5.57729 | CTTTTCCTGATTTAC CTTG CTTTT CAAG TTTTTTGTCTTCTTT TERM 116 114116 - 114103 - G 82 -2.5 -6.07627 | ATCTTGAAAAAAAAA TTTAT CAAA ATAAA CAATATTGGAAGGAT TERM 117 114189 - 114201 + g 71 -7.7 -3.61889 | opp_overlap 114188 114189 GTAAAATAGAAATAG GCACT CGT AGTGC TTTAGAAAATTTTTG TERM 118 114340 - 114303 - H 71 -7.3 -3.98214 | opp_overlap 114303 114305, overlap 114292 114323 ACTATTTATTATAAA GCTTTTTTTATAAAAAA AAAC TTATTTATAAAACAAGC TAAATATTTAGACTA TERM 119 114339 - 114323 - H 90 -4.5 -6.22802 | overlap 114292 114303 TTTTATAAAAAAAAA CTTATTT ATA AAACAAG CTAAATATTTAGACT TERM 120 114497 - 114483 - g 72 -5 -4.88295 | opp_overlap 114483 AAACAAACTTAAAAA TTGCTC ATT AAGCAA TATTAATACAAGTAA yplQ 114457 - 115158 + | hemolysin III BAPKO_0119 116456 - 115155 - | zinc protease, putative BAPKO_0120 117320 - 116478 - | phosphatidate cytidylyltransferase BAPKO_0121 118017 - 117325 - | undecaprenyl diphosphate synthase frr 118577 - 118023 - | ribosome releasing factor TERM 121 118346 - 118363 + g 76 -7.1 -4.37658 | opp_overlap 118359 TAAGTATAGCTTGTT CTATCTT ATTC AAGATAG TTTTATCCCAAGGTT tsf 119454 - 118615 - | elongation factor Ts rpsB 120224 - 119451 - | 30S ribosomal protein S2 BAPKO_0125 120730 - 120452 - | hypothetical protein TERM 122 120546 - 120532 - GR 81 -7.2 -4.80736 | TAGGAAATAAATAAA GAATAG GAT CTATTC GCCTTTCATAATAAT BAPKO_0126 120740 - 120561 - | hypothetical protein BAPKO_0127 121390 - 120749 - | hypothetical protein BAPKO_0128 122142 - 121531 - | hypothetical protein rpsA 123797 - 122142 - | 30S ribosomal protein S1 cmk 124465 - 123800 - | cytidylate kinase BAPKO_0131 125198 - 124449 - | hypothetical protein BAPKO_0132 125949 - 125185 - | hypothetical protein TERM 123 125599 - 125611 + g 70 -4.9 -4.63675 | opp_overlap 125597 CATTTTTAAGTCATA GAATT TAA AATTC TTTATTTGATTTAAT recA 127061 - 125964 - | recombinase A TERM 124 126932 - 126922 - G 70 -8.2 -3.01791 | opp_overlap 126921 ATGCCTTTCCCAACA GGGG ATT CCCC CATCTTAATAAGACT TERM 125 126950 - 126961 + g 77 -3 -5.56264 | TCTTAATAAGACTTC CTTT CCCA AAAG TTTTTTCTATTTGAA greA 129777 - 127075 - | fused transcript cleavage factor/uncharacterized domain-containing protein TERM 126 127931 - 127945 + g 76 -4.4 -5.26316 | CAAATATAGGCATCT TTATAA ATC TTATAA TTTTTTATAACATAA TERM 127 129290 - 129273 - G 95 -5.7 -5.79595 | opp_overlap 129273 TTCTAAAATAAAAAA TTGATTT TTGC AAATCAA TAGTTTCATAATAAG BAPKO_0135 130758 - 129814 - | hypothetical protein BAPKO_0136 130943 - 132070 + | hypothetical protein hisS 133485 - 132115 - | histidyl-tRNA synthetase TERM 128 133455 - 133472 + g 70 -5.7 -4.36931 | opp_overlap 133454 133455 CCTTAGGCAAATAAT CTTTAAA GCCT TTTAAAG TTTTAATGTCCATTG pbp-1 133618 - 135504 + | penicillin-binding protein BAPKO_0139 137397 - 135505 - | long-chain-fatty-acid CoA ligase TERM 129 136727 - 136715 - G 71 -7.7 -3.51708 | GATCTTTGAAAGGAA TGCCA AAT TGGCA AAATACACATAAATA BAPKO_0140 137875 - 137747 - | hypothetical protein BAPKO_0141 138261 - 137875 - | hypothetical protein acrB 141397 - 138185 - | acriflavine resistance protein TERM 130 140301 - 140266 - GR 70 -5.6 -4.30559 | opp_overlap 140272 140273 140275 AACAAAAGGTCAAAA CAATTGCTATTGGAAT AGAA ATTCCAATAATTATTG TGGCCCTAAAGCTTC TERM 131 140273 - 140294 + gr 74 -8.9 -2.87622 | opp_overlap 140266, overlap 140272 140275 GGTCAAAACAATTGC TATTGGAAT AGAA ATTCCAATA ATTATTGTGGCCCTA TERM 132 140613 - 140633 + gr 71 -7 -3.85698 | GCAATATCTTTAAGT TTTATCTC AATAG GAGATAAA TTTATGCCAGAAGAA mtrC 142369 - 141416 - | membrane fusion protein TERM 133 142344 - 142329 - G 72 -3.4 -5.28683 | opp_overlap 142332, overlap 142322 142321 ACTAAGACTAAAAAA TATTTT TTAA AAAATA AGTTAATATTAAAAA BAPKO_0144 143616 - 142381 - | hypothetical protein TERM 134 142956 - 142940 - G 72 -6.7 -4.25848 | opp_overlap 142934 142932 142931 AATGCTTCATTAAAA TTTAATG CTT CATTAAA TAAAGAAAAATCTAT BAPKO_0145 143745 - 144035 + | hypothetical protein proX 144908 - 144024 - | glycine betaine, L-proline ABC transporter, binding protein TERM 135 144817 - 144837 + g 82 -5.5 -5.52384 | overlap 144820 TATGCAATTTTTACC GATTTCAAA TTC TTTGAACTC TTTTTTTCATCACAA proW 145822 - 144923 - | glycine betaine, L-proline ABC transporter, permease protein proV 146947 - 145829 - | glycine betaine, L-proline ABC transporter, ATP- binding protein TERM 136 147069 - 147044 - R 100 -13.5 -5.99154 | opp_overlap 147044 147049 TACGAAATAAAAAAA CAAAAGATCCT TTAA AGGATCTTTTG TTAATAATTTGTACT TERM 137 147044 - 147069 + r 100 -13.5 -3.35869 | opp_overlap 147044, overlap 147049 TACGAAATAAAAAAA CAAAAGATCCT TTAA AGGATCTTTTG TTAATAATTTGTACT TERM 138 147049 - 147064 + r 86 -7.6 -4.76123 | opp_overlap 147044, overlap 147044 AATAAAAAAACAAAA GATCCT TTAA AGGATC TTTTGTTAATAATTT flaB 148110 - 147100 - | flagellin fliD 150230 - 148233 - | flagellar hook-associated protein FliD TERM 139 149914 - 149903 - G 77 -2.2 -5.80817 | TTGAAGACAAAAAAA CATC GGCT GACG CTATTTGATCAACAA TERM 140 150372 - 150362 - H 79 -4 -5.8096 | opp_overlap 150362 TATAAAAAACAAAAA CTTT AAA AAAG ATTAATGTTTATAGT nagA 150413 - 151618 + | N-acetylglucosamine-6-phosphate deacetylase nagB 151645 - 152451 + | glucosamine-6-phosphate deaminase sodA 153125 - 152514 - | superoxide dismutase secA 155839 - 153140 - | preprotein translocase subunit SecA TERM 141 153520 - 153489 - G 91 -9.8 -3.90744 | gap 1, opp_overlap 153485 153482 153496 GCCTCTCTTAAAGAA TCTAAATTTGCAAGA TGC TCTTG-AAATTTAGA ATCAATATTTCTCAA TERM 142 155866 - 155878 + H 80 -6.3 -5.10154 | opp_overlap 155865 155866 155876 ATTCTCCTAAATAAT TGACT TAA AGTCA TTTTTCATTTTAAAT TERM 143 156478 - 156459 - g 73 -8 -3.46509 | opp_overlap 156458 156459 156461 156473, overlap 156453 TTGCAATAATATCAA TATATAGC GAAG GCTATATA ATATATTCTTATGAT BAPKO_0156 155909 - 157045 + | putative lipoprotein TERM 144 157241 - 157229 - g 72 -4.9 -4.8855 | AAAAAATAAAAACAA TATCA AAA TGATA ATAAGCTATAAACAA BAPKO_0157 157074 - 157502 + | hypothetical protein BAPKO_0158 157506 - 157922 + | hypothetical protein BAPKO_0159 158071 - 158805 + | antigen, S2, putative BAPKO_0160 158832 - 159506 + | antigen S2-related protein TERM 145 159547 - 159515 - f 100 -12.3 -3.93004 | opp_overlap 159517 159520 AGAATAGGTCACAAA TCTCTTAGAAAAG ATTTTTA CTTTTCTAAGAGA GCAAAATATATAATA TERM 146 160217 - 160231 + G 75 -7.2 -4.1774 | CCCAATTTAATATGG TAAGAC CGG GTCTTA TTCTTTATGGTTATT alr 159571 - 160671 + | alanine racemase BAPKO_0162 162264 - 160663 - | hypothetical protein TERM 147 162260 - 162250 - G 74 -2.6 -5.57396 | AGAACTAATAAAAAA TATT ATA AATA ACATGAATAAATTCC BAPKO_0163 162340 - 162507 + | hypothetical protein TERM 148 162529 - 162485 - T 75 -8.2 -3.51994 | gap 1, opp_overlap 162494, overlap 162489 CAAAAAATACAGCAA GAAAGCCAAG-GGATTTATTT TAAC AAATAAATCCGCTTAACTTGC AAACTTTATTTTTTT TERM 149 162525 - 162489 - T 78 -7.6 -4.33803 | gap 1, opp_overlap 162494, overlap 162485 AAATACAGCAAGAAA GCCAAG-GGATTTATTT TAAC AAATAAATCCGCTTAAC TTGCAAACTTTATTT BAPKO_0164 164283 - 162535 - | hypothetical protein TERM 150 163011 - 163033 + g 74 -6.4 -4.57569 | opp_overlap 163011 163004 163015, overlap 163015 TATAATGAGAAACAA TAAGGTCAAG AAA TTTGACTTTA TTTTTCAAGCAATAC TERM 151 163015 - 163029 + g 72 -5 -4.85782 | opp_overlap 163015 163011 163004, overlap 163011 ATGAGAAACAATAAG GTCAAG AAA TTTGAC TTTATTTTTCAAGCA TERM 152 163537 - 163511 - G 71 -4.6 -4.82518 | overlap 163513 163529 163530 AAAAGATTAAGAAAA TCCAAAAAAATA AAA TAATTTTTTGAA AAAGTGATTCCTTTC BAPKO_0165 165349 - 164363 - | Na+/Ca+ exchange protein, putative TERM 153 164528 - 164512 - G 82 -8.1 -4.47679 | AATTTAAAATATAAA TATCTTG TAA CAAGATA GGTCTGAAAAAACTA TERM 154 164978 - 164967 - G 78 -4.4 -5.40072 | GGTGCCGCAAAAAAA GAGA AAGA TCTC AAATCAAATGAAAGC BAPKO_0166 167215 - 165377 - | hypothetical protein TERM 155 165563 - 165549 - G 76 -4.2 -5.4505 | TTTCCTAATAAAAAA GCCTGA ACA TAAGGC CTAATGACAACCCGA TERM 156 166636 - 166590 - G 73 -5.5 -4.67038 | opp_overlap 166594, overlap 166594 TTTTTAAAAGGAAAA GAAATTTTTTTAATAAGTC CACTTTTCT GACTAATTAAAAAAATATC TCCATAAACTCCAGA TERM 157 166632 - 166594 - G 72 -4.9 -4.86613 | opp_overlap 166594, overlap 166590 TAAAAGGAAAAGAAA TTTTTTTAATAAGTC CACTTTTCT GACTAATTAAAAAAA TATCTCCATAAACTC malQ 168861 - 167341 - | 4-alpha-glucanotransferase TERM 158 170028 - 169989 - g 78 -8.6 -3.84406 | overlap 169991 169993 TTCGGATTAGAAGAA GAGATGCACGAGCTCTCT GAAA AAAGAGCTCGTGCAATTG GAAATTATTTGATAA TERM 159 170026 - 169991 - g 93 -11.2 -3.50808 | overlap 169989 169993 CGGATTAGAAGAAGA GATGCACGAGCTCTCT GAAA AAAGAGCTCGTGCAAT TGGAAATTATTTGAT TERM 160 170024 - 169993 - g 100 -18.2 -3.32279 | overlap 169991 169989 GATTAGAAGAAGAGA TGCACGAGCTCTCT GAAA AAAGAGCTCGTGCA ATTGGAAATTATTTG tpn50 169002 - 170171 + | outer membrane protein BAPKO_0169 170237 - 170160 - | hypothetical protein BAPKO_0170 170559 - 170182 - | dnaK suppressor, putative TERM 161 170492 - 170511 + gH 86 -4.4 -5.80248 | GAATCCAATATCTCT TTTTTTTC AGCT GAAAGAAA TTTTTTTATCTCTTC TERM 162 170827 - 170811 - g 81 -7.3 -4.78752 | AGTAGAACTTAAAAA CAAACAC ATT GTGCTTG CCCATCTATCTGGAA infA 170725 - 170946 + | translation initiation factor IF-1 BAPKO_0172 173000 - 170994 - | hypothetical protein TERM 163 171825 - 171813 - G 75 -3.5 -5.4833 | opp_overlap 171813 171807, overlap 171806 GTATGGAACAAAAAA TAAAA AAG TTTTA TTTTTGTAATTCAAA BAPKO_0173 173581 - 172994 - | hypothetical protein BAPKO_0174 174603 - 173563 - | hypothetical protein BAPKO_0175 175547 - 174546 - | hypothetical protein TERM 164 175286 - 175296 + gr 71 -5.4 -4.61482 | opp_overlap 175286, overlap 175283 CAGCACCAGCACTAA GATG TAT CATC TTCTTTTTTGAAACC BAPKO_0176 176433 - 175534 - | hypothetical protein BAPKO_0177 177312 - 176437 - | hypothetical protein moxR 178318 - 177326 - | MoxR-related protein gidB 179001 - 178375 - | glucose inhibited division protein B gidA 180863 - 178998 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 165 179488 - 179474 - G 72 -5.8 -4.56597 | opp_overlap 179460 179474 179476 TTCTTTTCTTAAAAA GATATT TTG AATATC TCTCCTCATCAACAA TERM 166 180534 - 180520 - G 72 -7.2 -3.91506 | opp_overlap 180508, overlap 180518 GTATCTTGAAAAAGA TCAAGA TTA TCTTGA CGCTCTAAAGTTTCT trmE 182260 - 180866 - | tRNA modification GTPase TrmE BAPKO_0182 182343 - 182837 + | flagellar protein, putative TERM 167 184430 - 184459 + G 75 -9.4 -2.70298 | opp_overlap 184425 184421, overlap 184429 GATAATCAAGCAGCA CTGAGAATCTCC TCTTTT GGAAATTCTCAG ATTATGATTGGCAAA flgK 182849 - 184732 + | flagellar hook-associated protein FlgK TERM 168 184794 - 184782 - g 70 -7.7 -3.51307 | overlap 184781 TGAAAATTTAAAAAC CTCTG CAG CAGAG CAAGAGTCTAAAATT flgL 184735 - 186009 + | flagellar hook-associated protein FlgL BAPKO_0185 186011 - 186409 + | flagellar assembly protein FliW TERM 169 186483 - 186456 - g 81 -7.2 -4.74518 | AAGTATTAAAATAAA CTCTAATATTGA GGTT TTAATATTAGAG ATAAAAAAAGATACT csrA 186412 - 186657 + | carbon storage regulator BAPKO_0187 187294 - 186641 - | hypothetical protein BAPKO_0188 187700 - 187287 - | hypothetical protein TERM 170 187594 - 187582 - G 74 -4.8 -5.00884 | AGCCCCTTTAAAAAA CTGG TTTTC CCAG ATCCCATATCACCGC BAPKO_0189 187957 - 187697 - | hypothetical protein rplT 188519 - 188172 - | 50S ribosomal protein L20 BAPKO_0190 188164 - 188295 + | hypothetical protein rpmI 188740 - 188540 - | 50S ribosomal protein L35 infC 189323 - 188763 - | translation initiation factor IF-3 TERM 171 188945 - 188967 + g 70 -2.1 -5.37593 | gap 1, opp_overlap 188960, overlap 188948 188949 188960 CTTTAACCTTATTGC CGTCTTTGAG AAAA CTCAAA-ATG TTTTTTGATTTAAAA TERM 172 189790 - 189824 + G 100 -14.7 -3.6445 | opp_overlap 189801 ATATTTATATTTTTT TTTACTCTAAATGAA AATTC TTCATTTAGAGTAAA TTTAACAATTCTTAT BAPKO_0194 189517 - 190170 + | hypothetical protein TERM 173 190575 - 190550 - g 73 -8.5 -3.08977 | overlap 190547 190545 TTGCAAAAAACATTA CTATTTAGAGA CAAA TCTCTAAATAA CGAAGATCTTGAATA BAPKO_0195 190157 - 190912 + | putative lipoprotein BAPKO_0196 191774 - 190968 - | hypothetical protein BAPKO_0197 192913 - 191774 - | hypothetical protein TERM 174 192778 - 192798 + g 76 -6.9 -4.60258 | opp_overlap 192780, overlap 192780 192792 GGATGTTAGAAAACA AACTTTCTG CTT CAGAAAGTC TTTCTTCTTTAATCA TERM 175 192796 - 192780 - G 100 -9.5 -4.77775 | opp_overlap 192778 192780 192792 ATGTTAGAAAACAAA CTTTCTG CTT CAGAAAG TCTTTCTTCTTTAAT TERM 176 192780 - 192796 + g 87 -9.5 -3.89937 | opp_overlap 192780, overlap 192778 192792 ATGTTAGAAAACAAA CTTTCTG CTT CAGAAAG TCTTTCTTCTTTAAT prfA 193251 - 194324 + | peptide chain release factor 1 TERM 177 194985 - 194948 - g 77 -7.9 -4.12188 | overlap 194950 TTAGGATTTGGAAAA GATGGGCTTAATATTTC CAGA AAAATATTAAGCCAAGC AAAAGAAAAACTTAA TERM 178 194983 - 194950 - g 80 -9.1 -3.6581 | overlap 194948 AGGATTTGGAAAAGA TGGGCTTAATATTTC CAGA AAAATATTAAGCCAA GCAAAAGAAAAACTT BAPKO_0199 194327 - 195148 + | HemK family methylase TERM 179 196865 - 196854 - g 85 -3 -6.00086 | ATACTATAAAAAAAA TCAA TTAA TTGA AGTTGAGTGGGAAGC TERM 180 197082 - 197058 - g 70 -5.1 -4.71482 | opp_overlap 197062, overlap 197049 197062 ATCAAATGCTAAAAA TATAGCAAAAA TTA TTTCTGCTTTA AAAGAAAACCCAAAT spoT 195145 - 197148 + | guanosine-3,5-bis(diphosphate) 3- pyrophosphohydrolase TERM 181 198239 - 198219 - gT 74 -8.5 -3.15663 | opp_overlap 198219 ACCTATCCTTATTAA TTACAAATA AAA TATTTGTAA TCTATGAAAATACAA TERM 182 198219 - 198239 + GT 71 -8.5 -2.88544 | opp_overlap 198219 ACCTATCCTTATTAA TTACAAATA AAA TATTTGTAA TCTATGAAAATACAA TERM 183 198517 - 198493 - gT 100 -8.1 -5.43974 | AAAACCAAATAAAAA TACTATTATTC AAA AAATAATAGTA ACAATTATTTGGATA TERM 184 198564 - 198538 - gT 93 -11.2 -3.44622 | TATTTGGATAATTAA TTTTGTATTAAT AAC ATTAATACAAAA TACTACATCAATTAA TERM 185 199349 - 199333 - gT 75 -3.7 -5.38398 | overlap 199334 AGAAAAATATAAAAA TCTTGAA TAC TTCAAGC TAAAAAATGATAAAG TERM 186 199348 - 199334 - gT 71 -7.2 -3.79378 | overlap 199333 GAAAAATATAAAAAT CTTGAA TAC TTCAAG CTAAAAAATGATAAA BAPKO_0202 199454 - 199344 - | hypothetical protein BAPKO_0201 197138 - 199399 + | hypothetical protein ddlA 200481 - 199396 - | D-alanine--D-alanine ligase TERM 187 200149 - 200135 - GR 74 -8.6 -3.1829 | opp_overlap 200134 200137 ATACCAGCACCAACA CATGGA ATG TCCATG ACTTTTAAAACTCCT murE 202000 - 200483 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase TERM 188 200679 - 200666 - G 71 -2.5 -5.45652 | ATCGGGAATAAAAAA TAAAT CCTG ATTTA CAACTTTATTCACAA BAPKO_0206 202273 - 202647 + | hypothetical protein TERM 189 202747 - 202735 - f 72 -6.3 -4.43392 | overlap 202732 202744 TTAAAATTAAAACAA GTCAT AAA ATGAC TAAAGAAAGCATAAA TERM 190 202781 - 202744 - g 100 -12.4 -4.51847 | gap 1, opp_overlap 202752 202756 202771, overlap 202735 202732 202747 202756 AAACAAGTCATAAAA TGACTAAAGAAAGCATA AAAAA TATGCTTTCTTTAG-CA GGAAATTTAGGAATT TERM 191 202779 - 202747 - g 100 -15.2 -3.19859 | opp_overlap 202752 202756 202771, overlap 202732 202744 202756 CAAGTCATAAAATGA CTAAAGAAAGCATA AAAAA TATGCTTTCTTTAG CAGGAAATTTAGGAA TERM 192 202752 - 202774 + G 84 -9.3 -3.5394 | opp_overlap 202747 202744 202756, overlap 202756 202771 CATAAAATGACTAAA GAAAGCATA AAAAA TATGCTTTC TTTAGCAGGAAATTT BAPKO_0207 202743 - 203510 + | hemolysin, putative TERM 193 203695 - 203680 - g 70 -7.6 -3.40403 | opp_overlap 203679 GTCGGGCCATCAGAA GAAGCA ATTG TGCTTC GTCTTGGCAAGCTTA hflK 203563 - 204498 + | lambda CII stability-governing protein hflC 204499 - 205470 + | lambda CII stability-governing protein TERM 194 205474 - 205486 + F 76 -2.7 -5.95539 | opp_overlap 205465 205474, overlap 205465 205475 AAAAGAGATTGAAAA TCTAT TTT ATAGG TTTTTTTCTTTAAAA TERM 195 205514 - 205474 - f 84 -8.7 -4.30885 | opp_overlap 205465 205474 205475, overlap 205465 AAAAGAGATTGAAAA TCTATTTTATAGGTTTT TTTCTTT AAAATCTATAAAATAGA AATCCTAAAGTACTG TERM 196 207130 - 207120 - g 80 -4 -5.68438 | CGAGCAAACAAAAAA CAAA AAA TTTG ACATTAAGATGTTAG TERM 197 207230 - 207216 - g 72 -5.8 -4.53495 | CAAAAAAAACAATAA TGAAAA TCT TTTTCA AGCTGCTGTTATTGA BAPKO_0212 205930 - 207480 + | hypothetical protein BAPKO_0213 208054 - 207485 - | hypothetical protein TERM 198 207724 - 207703 - G 71 -2.4 -5.4588 | opp_overlap 207707, overlap 207696 TAAAATCATAAAAAA GATCTTTT TTACTC AAAAAATC CTCTGCTCTTTGAAA TERM 199 208660 - 208650 - g 70 -5.4 -4.59511 | AACATTGTTGAAAAA CCAA AAA TTGG AAGTGAGCCTAGCAA gtaB 208107 - 208943 + | UTP--glucose-1-phosphate uridylyltransferase TERM 200 209459 - 209437 - g 91 -8 -5.1502 | opp_overlap 209437, overlap 209451 209453 AGAAACAAAAATAAA TTTAAAATAT TAA ATATTTTAAA TAACAACTTAAAAAA TERM 201 210073 - 210051 - g 82 -9.4 -3.41341 | opp_overlap 210055, overlap 210049 210055 210066 AATCTTATTTAAAGA TAAATACATT AAA AATGTATTTA TACAAAGTATTATGA TERM 202 210069 - 210055 - g 70 -5.8 -4.35044 | opp_overlap 210055, overlap 210051 210049 210066 TTATTTAAAGATAAA TACATT AAA AATGTA TTTATACAAAGTATT BAPKO_0215 208930 - 210669 + | hypothetical protein TERM 203 210724 - 210753 + G 77 -5.3 -5.1166 | opp_overlap 210713 210729, overlap 210729 AAGATTTATTTATTA TTAAATAAAAATT GTAA AATTTTTATTTTA TTTTTAATTTTAATA TERM 204 210729 - 210748 + G 80 -5.2 -5.36689 | opp_overlap 210713 210729, overlap 210724 TTATTTATTATTAAA TAAAAATT GTAA AATTTTTA TTTTATTTTTAATTT TERM 205 211193 - 211171 - g 72 -3.4 -5.31519 | overlap 211176 ACATCTAAAGAAAAA GAATACCAAA AGG CTTGGGACTC ATATACTATGGCTAT BAPKO_0216 210706 - 211473 + | hypothetical protein TERM 206 212091 - 212074 - g 95 -3.5 -6.31682 | AAAATTAAAAAAAAA TTTAAGT GAAA ACTCAAA CAATGAAAATATTTT TERM 207 212277 - 212258 - g 71 -7.2 -3.71649 | overlap 212251 212261 CCTTCAAATTCTAAA GAAGAAAG TGAC CTTTCTCC ACCCAGCCAAACAAT TERM 208 212612 - 212629 + G 73 -8.5 -3.08798 | opp_overlap 212614, overlap 212614 ATACAACACTTGGAA GACCTTA AATC TAAGGTC TATTCAATAAAGCCT TERM 209 212774 - 212791 + G 73 -8.5 -3.08798 | opp_overlap 212768 212776, overlap 212776 ATACAGCAATTGGAA GACCTTA AATC TAAGGTC TATTCAATAAAACCT TERM 210 213908 - 213882 - g 78 -8.2 -4.00683 | opp_overlap 213881 AAAAACCTAACGAAA TTGCTATTTATA ATC TATCAATAGCAA AATTTGAAAACAATA BAPKO_0217 211466 - 214507 + | surface-located membrane protein 1 TERM 211 214792 - 214782 - g 71 -4 -5.12971 | overlap 214788 AAGATTTAAGAAAAA TAGA AAC TCTA GGATTTAGAGGAGAG TERM 212 215004 - 214986 - g 73 -4.6 -5.1356 | TTCCAGCAAGAAAAA GATTCTTA AAG CAAGAACC TATTGAAACAAAAAT TERM 213 215219 - 215232 + G 75 -5.3 -4.82901 | opp_overlap 215202 AAAATAGAAATATTT TTAGC ACCA GCTAA TTTTTCTAAAAAAAG mutL 214514 - 216349 + | DNA mismatch repair protein TERM 214 216616 - 216591 - g 100 -6.4 -5.96894 | opp_overlap 216591 216589 216606, overlap 216606 ATTTAAACAAAAAAA TTTATATTCT TAAAAC AGAATATAAA TCTGTTAGTAAATTA TERM 215 216797 - 216784 - g 84 -3.9 -5.86976 | TTATAAAACAAAAAA TTCTT TACA AAGAA TAATACTTAAAGTCA BAPKO_0219 216368 - 217402 + | hypothetical protein BAPKO_0221 218168 - 217515 - | putative lipoprotein efp 218724 - 218146 - | translation elongation factor P pstS 218890 - 219729 + | phosphate ABC transporter, periplasmic phosphate-binding protein TERM 216 219771 - 219750 - f 76 -4.5 -5.34857 | TTAAAGAAAAGAAAA CTTGACTTA ATAT CAAATCAAG TAATACAATTTAACA TERM 217 220522 - 220536 + G 88 -7.8 -4.83615 | CAGTATTAATGGTTG GAGGGG GTT CTCCTC TTTTTATAAAAAATC pstC 219819 - 220727 + | phosphate ABC transporter, permease protein TERM 218 221996 - 221967 - g 95 -8.7 -4.95484 | overlap 221969 TAGGAGCAAACAAAA CAGAAACCATAAT TTTA ATTATGGTTCCAG CAGCTATTCCTGGAA TERM 219 221994 - 221969 - g 91 -9.9 -4.08958 | overlap 221967 GGAGCAAACAAAACA GAAACCATAAT TTTA ATTATGGTTCC AGCAGCTATTCCTGG pstA 220724 - 222268 + | phosphate ABC transporter, permease protein TERM 220 222571 - 222555 - g 72 -3.7 -5.21236 | overlap 222557 AACTTAGAAGAAAAA TAGGAAT GGT ATTCCAA ACTCCTAATCCATTT TERM 221 222569 - 222557 - g 70 -6.3 -4.22377 | overlap 222555 CTTAGAAGAAAAATA GGAAT GGT ATTCC AAACTCCTAATCCAT pstB 222269 - 223051 + | phosphate ABC transporter, ATP-binding protein gufA 223875 - 223054 - | gufA protein TERM 222 223790 - 223770 - G 91 -3.9 -5.95539 | overlap 223772 TTCTAAAGAAAAAAA CTGCTCCTG CAC CAAAAGCTG TAGTAAACCAAGTGA alaS 225700 - 223916 - | alanyl-tRNA synthetase TERM 223 224142 - 224159 + g 70 -2.1 -5.4251 | opp_overlap 224141, overlap 224149 AATTCCATTATAGAT TTTTTTA CAGA TAAAGAA TTTTTTATCTGTAAA fliG-1 226917 - 225700 - | flagellar motor switch protein TERM 224 226025 - 226042 + g 78 -9.9 -2.68127 | opp_overlap 226028, overlap 226024 226039 ATTTCATTGTCCACA GCAGGAT TTAA ATCCTGC ATATTAATTTTATTA pgl 227611 - 226904 - | 6-phosphogluconolactonase TERM 225 227489 - 227476 - G 77 -5.3 -5.06414 | overlap 227440 TTTGTTTAAGAAAAA CACTT AAAA AAGTG ACTATGCTTCGACCG TERM 226 227578 - 227559 - G 77 -3 -5.58454 | TTCATATTAAAAAAA TCAAAAAA TCTA TTTTTTAA ATTATTCTCTTCATC BAPKO_0231 227853 - 227716 - | hypothetical protein TERM 227 227762 - 227781 + g 79 -9.4 -3.18681 | opp_overlap 227760 227757 227764 227780 TCATTAAAATTCATA GATCCTAT TTTT ATAGGATC TTCATCAAATTCACA BAPKO_0232 228041 - 227874 - | hypothetical protein TERM 228 228273 - 228263 - g 84 -4 -5.81412 | GTGATGTAAAAAAAA TTGT AAA ACAA ACACCCTTAGAATCT BAPKO_0233 228118 - 229119 + | tRNA-dihydrouridine synthase A serS 230386 - 229109 - | seryl-tRNA synthetase TERM 229 230194 - 230204 + g 70 -5.4 -4.46581 | opp_overlap 230183 230194 AAGAGATTTTTAAAA CCTT ATC AAGG TTTTCTCGCATTTTA BAPKO_0235 230526 - 231242 + | hypothetical protein TERM 230 231263 - 231251 - g 74 -4.9 -5.04601 | GCCATAAATGAAAAA GAAAA AAA TTTTC AAACTAATTTCAAAA TERM 231 231344 - 231358 + G 75 -7.2 -4.17048 | opp_overlap 231343 CGGTCTTGAAATATT TCACTT AAA AAGTGA TTCTTTTAAAGAAAA TERM 232 231384 - 231374 - g 75 -5.4 -4.86731 | TTCTTTTAAAGAAAA TGCA TTT TGCA TAGCCTTCAAGACAA TERM 233 233417 - 233405 - g 72 -3.5 -5.20154 | AGACAATTTAAAAAA TAAAA TAA TTTTA AAAAACAATCTATCT BAPKO_0236 231243 - 234161 + | hypothetical protein BAPKO_0237 234232 - 234158 - | hypothetical protein rpmE2 234443 - 234198 - | 50S ribosomal protein L31 type B TERM 234 234516 - 234490 - R 73 -5.3 -4.82154 | opp_overlap 234481 234477 234493, overlap 234481 AATTTACATTAAAAA TAATGTCAATT TATTT AATTGCCATTA CTCATTGTCTTTAAA rho 236051 - 234504 - | transcription termination factor Rho BAPKO_0240 236538 - 236131 - | hypothetical protein hbb 236865 - 236539 - | hbbU protein rpsT 237135 - 236878 - | 30S ribosomal protein S20 BAPKO_0243 238033 - 237206 - | hypothetical protein TERM 235 237543 - 237529 - G 81 -2.2 -6.11392 | AAATAAATAAAAAAA TAAATA TAT TACTTA ATGAAATATAATAAA BAPKO_0244 239149 - 238043 - | translation-associated GTPase BAPKO_0245 241191 - 239185 - | hypothetical protein TERM 236 242749 - 242723 - gR 80 -5.2 -5.243 | opp_overlap 242726, overlap 242726 242730 GAAAGCATTAAAAAA TTAGAAACCTTT ACA AAAGGTTACTTA TTATCAACTGTAAAA TERM 237 242742 - 242730 - gR 72 -6.3 -4.3179 | opp_overlap 242726, overlap 242726 242723 TTAAAAAATTAGAAA CCTTT ACA AAAGG TTACTTATTATCAAC BAPKO_0247 243630 - 242857 - | hypothetical protein lnt 241352 - 242920 + | apolipoprotein N-acyltransferase TERM 238 243575 - 243563 - GT 77 -7.7 -4.10144 | TCAACATAAGAAGAA TTGCC TTG GGCAA ACAAATTCAAAAAAA dck 244297 - 243695 - | deoxyguanosine/deoxyadenosine kinase(I) subunit 2 TERM 239 244479 - 244444 - H 93 -9.4 -4.41616 | opp_overlap 244443 244452 244459, overlap 244459 ATTTTGGGAAAGAAA TCAATAATTTAAAAAT TAAA AATTTTAAATTATTGA CATTAATCTTAATTA TERM 240 245387 - 245419 + G 75 -7.1 -4.09685 | opp_overlap 245399 ACCTAAGTGTATTTA TTGTGCCAATAATTG GGC CAATAATTGGAGCAA TTTTAGGCGCTACAA glpF 244705 - 245469 + | glycerol uptake facilitator TERM 241 245488 - 245457 - f 80 -6.1 -5.22312 | overlap 245476 ATTTACACTAAAAAA TAACAAAGATTAA AAGATA TTTATCTTTGTTA AAATAAAAAGGAGAA TERM 242 246641 - 246627 - g 70 -8.6 -2.66481 | opp_overlap 246630 246639, overlap 246630 246632 CAAAAGCTCACATTA CAAGAG CTG CTCTTG AGAGCATCGCATTTC TERM 243 246830 - 246816 - g 70 -5.6 -4.28819 | opp_overlap 246815 246818 AAATAACAGAAACAA CCGCTC TTG GAGCTG CTTATCTTGCAGGGC TERM 244 246951 - 246931 - g 74 -4.8 -5.10029 | ATCAATGCCAAAAAA TCAAAAAG AAAAA CTTCTTGA GAATTGGAACAGAGC glpK 245507 - 247012 + | glycerol kinase BAPKO_0251 247067 - 247306 + | hypothetical protein TERM 245 247486 - 247472 - g 72 -7.2 -3.95369 | opp_overlap 247471 247472 247481, overlap 247470 247481 AGCAAAATTAAAAGA TCTTGA AAA TCAAGA ATTTGATCTTATAAT TERM 246 248598 - 248587 - g 76 -4.4 -5.28826 | AAATGGCAGAAAAAA CCTT GCTC AAGG CCATAGAAAAAAATT glpA 247440 - 249008 + | glycerol-3-phosphate dehydrogenase, anaerobic TERM 247 249050 - 249032 - T 100 -11.8 -4.21974 | opp_overlap 249032 TTACTATTCAACAAA GGGATTGT TTA ACAATCCC TTTTAATTTAAAATT TERM 248 249032 - 249050 + T 100 -11.8 -4.564 | opp_overlap 249032 TTACTATTCAACAAA GGGATTGT TTA ACAATCCC TTTTAATTTAAAATT BAPKO_0253 249589 - 249095 - | hypothetical protein BAPKO_0254 250130 - 249576 - | hypothetical protein BAPKO_0255 251156 - 250131 - | hypothetical protein TERM 249 251213 - 251197 - H 76 -2.4 -5.95539 | GCTCAAACAAAAAAA TTAAAA ATTTA TTTTAA CACTTTAGACAAAAA TERM 250 251422 - 251410 - g 72 -3.5 -5.33921 | AAATGAAGTAAAAAA TATAT TAG ATATA CCTAATTTAAACTTA TERM 251 251717 - 251701 - g 73 -8.1 -3.44915 | TGAAAAAAATAGACA TGCATAT TTT ATATGCA ACATAAGTTATATAT BAPKO_0256 251354 - 251959 + | hypothetical protein pepF 252079 - 253851 + | oligoendopeptidase F BAPKO_0258 253865 - 254569 + | phosphatidyltransferase dedA 254566 - 255180 + | dedA protein leuS 255376 - 257898 + | leucyl-tRNA synthetase TERM 252 257984 - 258011 + G 70 -8 -3.05596 | overlap 257989 ATTAATTACTATTTT TTTAGGATTTTT TTTA AAAAATCTTAAA TTCGATGCGAACATC TERM 253 258138 - 258128 - g 82 -2.6 -6.10295 | TCAAGATAAAAAAAA TATT TTC AATA AAAAAAATTTTGAAA TERM 254 259232 - 259219 - g 76 -3.9 -5.44119 | CCGATGTGAAAAAAA CATTA AACC TAATG CAAAAAGAAATGGGG BAPKO_0262 257913 - 260216 + | hypothetical protein lon-1 262625 - 260205 - | ATP-dependent protease LA TERM 255 261577 - 261596 + g 70 -6.6 -3.89881 | opp_overlap 261593, overlap 261565 261594 TTATCTAAAATTTTC TTAGATTT TTGC AAATCTAA TTTATCAAAATTAAT recJ 262898 - 265018 + | single-stranded-DNA-specific exonuclease BAPKO_0265 265011 - 265955 + | hypothetical protein rpsU 265970 - 266179 + | 30S ribosomal protein S21 BAPKO_0267 268569 - 266218 - | cell division protein, putative TERM 256 266468 - 266481 + g 77 -5.3 -5.09173 | opp_overlap 266468 TCATCATCAATATAA TTTGG TTCT CCAAA TTTTTTAACCTCTTC TERM 257 266637 - 266615 - G 70 -7.8 -3.44051 | TTTTCAGCACCAGAA GATCCAAGAA TTA TTCTCGAATC CATAGAGCTGGCTAC TERM 258 266674 - 266664 - G 73 -5.4 -4.80453 | CTACCATAAAAGAAA TCCT TGA AGGA AAATTGGCTTTTATT TERM 259 267116 - 267102 - G 80 -5.8 -5.04385 | GAGATTTTGAAAAAA TAATTG AAG CAATTA AAGAATTCACACAAA bacA 269367 - 268573 - | undecaprenyl pyrophosphate phosphatase TERM 260 269160 - 269128 - G 88 -10.9 -3.00704 | opp_overlap 269119 269137, overlap 269123 ATTCGTTAAATCAGA TTTATTAGTTTTTCT TAA AGAAAATCTAATAAA AGTTGAAAAAAGTTC BAPKO_0269 271550 - 269382 - | hypothetical protein TERM 261 269790 - 269801 + g 75 -5.8 -4.63218 | opp_overlap 269774 269790 AGCATTTTTCTCAAA GCTG CTCT CAGC TTTTATTAAAGAAAA BAPKO_0270 272538 - 271528 - | hypothetical protein TERM 262 272400 - 272378 - G 74 -4.2 -5.32565 | GAACCAACTAAAAAA GAATCTGAAA AAT CTTCATATTC ACTAACATAAAAATT BAPKO_0271 272741 - 274123 + | hypothetical protein BAPKO_0272 275383 - 274130 - | hypothetical protein TERM 263 274747 - 274773 + g 76 -8.2 -3.73386 | TAATATTTCTTACAT CTTTAATTTCAT TAA AGGAAATTAAAG TTTCACTAGTTATCT TERM 264 275043 - 275023 - G 100 -8.5 -5.5112 | CGTAGTAAGAAAAAA TATTGATAT GAA ATATCAATA TAAAAATAAAGATTA TERM 265 275242 - 275192 - G 95 -8.8 -5.07941 | opp_overlap 275200, overlap 275196 275234 AAAATTATAGAAAAA TAAAGAAACTTTTTTAAAAAAA AAATCAA TTTTTTTAAAAAAGTTTCTAAA CTTAAAAACTTTTTT TERM 266 275238 - 275196 - G 100 -14 -5.01422 | opp_overlap 275200, overlap 275192 275234 TTATAGAAAAATAAA GAAACTTTTTTAAAAAAA AAATCAA TTTTTTTAAAAAAGTTTC TAAACTTAAAAACTT TERM 267 275200 - 275234 + g 84 -9 -3.92522 | opp_overlap 275196 275192 AGAAAAATAAAGAAA CTTTTTTAAAAAAA AAATCAA TTTTTTTAAAAAAG TTTCTAAACTTAAAA lepB-3 275559 - 275951 + | signal peptidase I dnaK-1 277444 - 275975 - | heat shock protein 70 BAPKO_0275 277943 - 277422 - | hypothetical protein TERM 268 277690 - 277657 - G 100 -11.9 -4.2349 | opp_overlap 277658, overlap 277658 277660 CTCTTAGATCCAAAA TTAGCAGTACTATTC CCAG GAATAGTACTGCCAT TAAATCCCAACAATC TERM 269 277689 - 277658 - G 100 -15.4 -3.13773 | opp_overlap 277658, overlap 277657 277660 TCTTAGATCCAAAAT TAGCAGTACTATTC CCAG GAATAGTACTGCCA TTAAATCCCAACAAT TERM 270 277658 - 277689 + g 100 -13.2 -3.05463 | opp_overlap 277658 277657 277660 TCTTAGATCCAAAAT TAGCAGTACTATTC CCAG GAATAGTACTGCCA TTAAATCCCAACAAT TERM 271 277687 - 277660 - G 100 -15.8 -3.12666 | opp_overlap 277658, overlap 277658 277657 TTAGATCCAAAATTA GCAGTACTATTC CCAG GAATAGTACTGC CATTAAATCCCAACA BAPKO_0276 278265 - 277963 - | hypothetical protein TERM 272 278166 - 278180 + g 75 -5.8 -4.71401 | TAAATCTAGCATTTT GATTAA TTT TTAATC TTTTATGCTTTTCTT BAPKO_0277 280196 - 278292 - | hypothetical protein BAPKO_0278 280678 - 280199 - | hypothetical protein TERM 273 280374 - 280388 + g 78 -4.3 -5.45802 | opp_overlap 280374 280383, overlap 280368 280383 CTGATATTTTGAGAA TTCTC ATAAC GAGAA TTTTTATTTTGAAAA TERM 274 280383 - 280415 + g 95 -12.3 -3.72984 | opp_overlap 280374 280383 280389, overlap 280374 280368 TGAGAATTCTCATAA CGAGAATTTTTATTT TGA AAATCAAAATTCTCG TTTAAATCCTTATAA TERM 275 280415 - 280383 - G 95 -12.3 -3.34233 | opp_overlap 280374 280368 280383, overlap 280374 280389 TGAGAATTCTCATAA CGAGAATTTTTATTT TGA AAATCAAAATTCTCG TTTAAATCCTTATAA TERM 276 280526 - 280491 - G 75 -7.2 -4.13561 | gap 1, opp_overlap 280476 280502 TCTGTCGAAAAAAGA TTTGATAGATATTTCTT ATA AAGAAAT-TCAATCAAA AGCCCAATAATAAAA ylxH-1 281575 - 280688 - | minD-related ATP-binding protein flhF 282753 - 281587 - | flagellar biosynthesis regulator FlhF TERM 277 282650 - 282636 - G 70 -6.4 -4.2573 | opp_overlap 282636 282641 TAAACAAGCCTAAAA TTCCCC CAT GAGGAA TGGTTTTATAGGTCA flhA 284848 - 282758 - | flagellar biosynthesis protein FlhA flhB 285978 - 284860 - | flagellar biosynthesis protein FlhB fliR 286766 - 285978 - | flagellar biosynthesis protein fliQ 287065 - 286802 - | flagellar biosynthesis protein fliP 287837 - 287073 - | flagellar biosynthesis protein FliP fliZ 288474 - 287848 - | flagellar biosynthesis protein FliZ TERM 278 288480 - 288450 - G 75 -3.5 -5.51165 | AAAACGCTAAAAAAA CTAAAAATAAAAA TTTAT TATTCATTTTTAG TTTTAATTATCTCAG fliN 288808 - 288467 - | flagellar motor switch protein fliM 289909 - 288851 - | flagellar motor switch protein FliM fliL 290466 - 289930 - | flagellar basal body-associated protein FliL motB 291296 - 290514 - | flagellar motor protein MotB motA 292078 - 291296 - | flagellar motor rotation protein A flbD 292299 - 292075 - | flagellar protein flgE 293648 - 292320 - | flagellar hook protein FlgE TERM 279 292597 - 292582 - G 78 -7.6 -4.33182 | overlap 292592 GGATTCATAAAAGAA GCAAGA GCAA TCTTGC CAAGATCTCGCCTTA flgD 294096 - 293653 - | flagellar basal body rod modification protein flbC 295294 - 294110 - | flagellar protein TERM 280 294748 - 294758 + g 84 -4 -5.9003 | opp_overlap 294735 294748, overlap 294735 AATTTTTAACATCAA TGTT AAT AACA TTTTTTTCTTCCTTT TERM 281 294880 - 294892 + g 75 -3.5 -5.38326 | AACAGAGTCTTTCAA TTTTT TCA AAAAA TTTTTCTTTGCTTAG flbB 295919 - 295302 - | flagellar protein flbA 296343 - 295912 - | flagellar protein fliI 297650 - 296340 - | flagellum-specific ATP synthase TERM 282 297682 - 297701 + r 71 -6.6 -4.02581 | opp_overlap 297682 297681 ACTTAACTTAATAAC GAAAAATT TTTA AATTTTTC TTCTATTTTATCAAG fliH 298589 - 297669 - | flagellar assembly protein H TERM 283 297881 - 297898 + g 72 -4.9 -4.91977 | AATCATCAAGATTTA CACGAAT GGTA ATTTGTG TTTTATCTTTTACTC fliG 299638 - 298604 - | flagellar motor switch protein G fliF 301363 - 299654 - | flagellar MS-ring protein fliE 301713 - 301378 - | flagellar hook-basal body protein FliE flgC 302183 - 301725 - | flagellar basal body rod protein FlgC flgB 302614 - 302207 - | flagellar basal body rod protein FlgB hslU 303994 - 302648 - | ATP-dependent protease ATP-binding subunit TERM 284 302798 - 302810 + g 74 -6.3 -4.48987 | AACGCCGTGAAGTCT TCTTG CGC CAAGA TTTTCATTCTCAAGA hslV 304535 - 303987 - | ATP-dependent protease peptidase subunit smf 305491 - 304544 - | smf protein TERM 285 305116 - 305136 + g 72 -6.2 -4.39133 | opp_overlap 305116, overlap 305127 305130 GATGTGAAGAAAATT CTCTTGTT CTCTC AGCAAGAG TTTTGCTAATTCTTC TERM 286 305190 - 305200 + g 70 -6.8 -3.97947 | opp_overlap 305189 AATGAAGAAAAATTT GGCA AAT TGCC TTTATAATAAATAGC BAPKO_0308 306190 - 305498 - | hypothetical protein TERM 287 306175 - 306159 - G 77 -5.3 -5.05037 | CAAGATAAAAATAAA TTAATAA GTA TTATTAA CGACAAAATTTTCAT ftsZ 307390 - 306191 - | cell division protein FtsZ TERM 288 307018 - 307032 + g 93 -11.4 -3.25823 | opp_overlap 307018 CAACTTGCGCAATAA CCGGAG CTG CTCCGG TTCCTGTCCCACCCC TERM 289 307032 - 307018 - G 93 -11.4 -3.62522 | opp_overlap 307018 CAACTTGCGCAATAA CCGGAG CTG CTCCGG TTCCTGTCCCACCCC TERM 290 307174 - 307188 + g 95 -8.6 -4.82901 | GCCCCGCTGTAACTT TTGCTC CAA GAGCAA TTTTTATAGGAGCAA ftsA 308653 - 307412 - | cell division protein divB 309396 - 308653 - | cell division protein ftsW 309989 - 309432 - | cell division protein BAPKO_0313 310490 - 310062 - | hypothetical protein mraY 311588 - 310533 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 291 310920 - 310893 - G 70 -6.4 -4.19371 | opp_overlap 310893 310900 310901 CAAAGCTCCAAGAAA TATTACAAGCTC TTCA GAGCCTTTAATA TTTGGAATATGCAAA TERM 292 311099 - 311083 - G 75 -7.3 -4.2243 | overlap 311073 ATAAACATGCCAAAA GGAATGT AAA ACACTCC CAAATCCATTTTAAA TERM 293 311404 - 311381 - G 71 -3.8 -5.15107 | opp_overlap 311381 311396 CACAAAAAAAAATAA GAATGCCTCC CATA GTAGGAATTC CTGTTTTTTCACTCA murF 312997 - 311606 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine TERM 294 311804 - 311794 - G 74 -2.6 -5.63103 | opp_overlap 311794 CGCCAATTAAAAAAA TTTT ATC AAAA TTCATTGAAACAGCC TERM 295 312333 - 312351 + g 73 -9 -2.59431 | opp_overlap 312331 TTTTTGCCAATTATT TTGCTTTT CTC AAAAGCAA TAGCTTGTAACCCCC BAPKO_0316 313301 - 313020 - | hypothetical protein BAPKO_0317 314188 - 313298 - | hypothetical protein TERM 296 314190 - 314209 + r 82 -2.3 -6.28631 | ACATTATTATTCATT TAATTTA AACCTA TAAATTA TTTTTTTTTCATTTC BAPKO_0318 315017 - 314181 - | hypothetical protein BAPKO_0319 316090 - 315014 - | hypothetical protein TERM 297 316067 - 316022 - G 100 -13.1 -4.18443 | opp_overlap 316027 316032, overlap 316027 TATAAATAATAACAA CAAAATTAAATTCAAAAAATT TTTT AATTTTCTGAATTTAATTGTG CCCTCTTCTACATTA TERM 298 316062 - 316027 - G 100 -11.6 -5.01823 | opp_overlap 316027 316032, overlap 316022 ATAATAACAACAAAA TTAAATTCAAAAAATT TTTT AATTTTCTGAATTTAA TTGTGCCCTCTTCTA TERM 299 316027 - 316062 + g 82 -9.4 -3.37474 | opp_overlap 316027 316022, overlap 316032 ATAATAACAACAAAA TTAAATTCAAAAAATT TTTT AATTTTCTGAATTTAA TTGTGCCCTCTTCTA BAPKO_0320 316878 - 316120 - | hypothetical protein TERM 300 317128 - 317096 - R 73 -5.8 -4.78933 | TTAAAACATACAAAA TTCTCTAGTCTAAT TCAAG ATTAGACTAAATAA AAACATTTAAATAAC TERM 301 317184 - 317159 - R 75 -9.3 -2.74982 | opp_overlap 317156, overlap 317156 317153 317172 AACTAATAACAATAT TTTTTAAAAAG AATA CTTTTTAAAAA GCATTAAACTTACAA BAPKO_0321 318033 - 317194 - | hypothetical protein TERM 302 317896 - 317882 - G 77 -2.9 -5.57888 | ATCAAAAAAAGAAAA TTTTC TCTTG GAAAA GATAATAAAGGCTTG cheW-1 318553 - 318023 - | purine-binding chemotaxis protein ftsJ 319168 - 318599 - | cell division protein ispB 319228 - 320271 + | octaprenyl-diphosphate synthase BAPKO_0325 320271 - 320954 + | hypothetical protein BAPKO_0326 321762 - 320956 - | hypothetical protein BAPKO_0327 322695 - 321763 - | hypothetical protein TERM 303 322186 - 322176 - G 77 -3.2 -5.69068 | overlap 322148 322146 TAAAAACATAAAAAA GCCA AAT TGAC ATACCAAGCAAAAAC mglA-1 324152 - 322692 - | methylgalactoside ABC transporter, ATP-binding protein TERM 304 323707 - 323666 - G 79 -6.9 -4.72986 | gap 1, opp_overlap 323659, overlap 323669 CACTCTCATCAAAAA TAATTATTTTTGCATTCTCT TTA AGAGAA-GCAATAATAAGTA GAAAATAAATTTCTT TERM 305 323704 - 323669 - G 83 -8.6 -4.47707 | gap 1, opp_overlap 323659, overlap 323666 TCTCATCAAAAATAA TTATTTTTGCATTCTCT TTA AGAGAA-GCAATAATAA GTAGAAAATAAATTT BAPKO_0329 325189 - 324152 - | exported protein BAPKO_0330 325574 - 325323 - | hypothetical protein BAPKO_0331 326667 - 325609 - | hypothetical protein BAPKO_0332 326941 - 328080 + | hypothetical protein TERM 306 328117 - 328098 - f 100 -13.6 -4.18441 | opp_overlap 328098 ACAAACAATCATAAA GCAAGGCC TTTA GGCCTTGC TTTCTTGTTTTACAT TERM 307 328098 - 328117 + F 100 -13.6 -4.68601 | opp_overlap 328098 ACAAACAATCATAAA GCAAGGCC TTTA GGCCTTGC TTTCTTGTTTTACAT TERM 308 328263 - 328252 - g 78 -5.8 -4.91657 | opp_overlap 328252 AATTAACAAAAGAAA CTCC TTAT GGAG TTTATCTCAGAGAAG BAPKO_0333 328176 - 328541 + | hypothetical protein BAPKO_0334 329657 - 328548 - | hypothetical protein TERM 309 329664 - 329648 - G 81 -2.3 -6.11392 | AAAGAAATAAAAAAA TTTTCTT CAT AAGGAAA CTGACCTCATAAACA BAPKO_0335 332512 - 329708 - | hypothetical protein TERM 310 329963 - 329979 + g 76 -6.7 -4.49311 | ATTATAAGTCTCAAT TTCTTTT AGT AAAAGAA TTTTATGATAATCAT TERM 311 331355 - 331374 + g 72 -5 -4.92385 | opp_overlap 331355 ATAAGCGTCTCTAAA GATAGCTT TTGC AAGCTCTC TTTTATTTGCGTATA TERM 312 332051 - 332093 + g 100 -24 -3.31263 | opp_overlap 332034 332031 332060, overlap 332024 332060 ATTATCACTTTGAGT GTTAATCAATTCTTCAGAAT TTA ATTCTGAAGAATTGATTAAC TTATCAAAATCCAGT TERM 313 332060 - 332084 + g 100 -13.1 -3.41978 | opp_overlap 332031 332060, overlap 332024 332051 TTGAGTGTTAATCAA TTCTTCAGAAT TTA ATTCTGAAGAA TTGATTAACTTATCA TERM 314 332084 - 332060 - G 100 -13.1 -3.34895 | opp_overlap 332024 332060 332051, overlap 332031 TTGAGTGTTAATCAA TTCTTCAGAAT TTA ATTCTGAAGAA TTGATTAACTTATCA TERM 315 332476 - 332433 - G 78 -7.6 -4.3467 | opp_overlap 332425 332438 332439, overlap 332436 ATGCTCACACCAAAA GATTCTTTAGATGATCTTTC ATTA GAAAGATCATCTAATATTTC TCTTTTAAACTGTTT TERM 316 332438 - 332472 + g 100 -11.1 -4.45771 | gap 1, opp_overlap 332436 332433, overlap 332425 332439 CACACCAAAAGATTC T-TTAGATGATCTTTC ATTA GAAAGATCATCTAATA TTTCTCTTTTAAACT TERM 317 332439 - 332470 + g 100 -16.2 -3.82656 | opp_overlap 332436 332433, overlap 332425 332438 ACACCAAAAGATTCT TTAGATGATCTTTC ATTA GAAAGATCATCTAA TATTTCTCTTTTAAA BAPKO_0336 333429 - 332536 - | glycerol-3-phosphate O-acyltransferase, putative TERM 318 332653 - 332669 + g 70 -5.3 -4.46757 | CTCTGTCTGACAATC TTTTAAA GTA TTTAAAA TTTTATCCCTATATT TERM 319 333788 - 333757 - H 78 -7.6 -4.32131 | overlap 333752 333759 GCAAAACAAAGTAAA TATTCTTTATTAAA AAAG TTTAATAAAGAATC AACACAATAAATATG TERM 320 333786 - 333759 - H 90 -10.2 -3.73447 | overlap 333757 333752 AAAACAAAGTAAATA TTCTTTATTAAA AAAG TTTAATAAAGAA TCAACACAATAAATA TERM 321 333851 - 333862 + G 77 -3 -5.68438 | ATATAAAAATAGCTT TAGT GTTA ACTA TTTTTTCTTTAATAG TERM 322 334487 - 334462 - g 71 -7.1 -3.86254 | gap 1 AAACTCAAAGAAAGA TCTATTAACGAT AAA ATCGT-AATAGA AAAAAATGAAAAATA oppA-1 333829 - 335400 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 323 335408 - 335398 - f 70 -2.6 -5.48054 | overlap 335401 ATTAAAACTAAAAAA TAAT AAA ATTA AGTAATTTTAAAATT TERM 324 335515 - 335531 + G 80 -5.3 -5.35222 | opp_overlap 335514 335515 335517 TGAAATTACAAAAGT TATTATT TTT AATAATA TTTTTTCTAACTTTT TERM 325 335824 - 335788 - g 70 -2.2 -5.47159 | overlap 335789 335791 CCCTAAGAGAAAAAA TCATCTGGAGTGATGG AGTTG CAATCACTGCAGAAGG GATTAGAAAATCTTA oppA-2 335499 - 337082 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 326 337109 - 337136 + F 80 -3.5 -5.83226 | opp_overlap 337103 TTAATTAAATAAAAA TCGTCTATTAA TTTCTT TTCATAGGCGA TTTTTTTATTGACTT oppA-3 337227 - 338852 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 327 338934 - 338887 - f 78 -6.6 -4.8066 | opp_overlap 338897, overlap 338890 AACATAATTTAAAAA TAATATTTAAGATTCTAAGGCA AAAT TAACTTAGAATCTTAAATAAAA AAACAAATCCTTATC TERM 328 338931 - 338890 - f 100 -12.7 -4.48792 | opp_overlap 338897, overlap 338887 ATAATTTAAAAATAA TATTTAAGATTCTAAGGCA AAAT TAACTTAGAATCTTAAATA AAAAAACAAATCCTT oppB-1 339148 - 340068 + | oligopeptide ABC transporter, permease protein oppC-1 340081 - 341130 + | oligopeptide ABC transporter, permease protein BAPKO_0342 341102 - 341185 + | hypothetical protein oppD 341142 - 342017 + | oligopeptide ABC transporter, ATP-binding protein oppF 342018 - 342989 + | oligopeptide ABC transporter, ATP-binding protein BAPKO_0345 343734 - 343003 - | hypothetical protein TERM 329 344883 - 344852 - g 73 -4.5 -5.02074 | opp_overlap 344853 344856, overlap 344835 344853 TCATTTCTTAAAAAA GGAATTGAAATGG GAGTTG CCAATTCAATTCT TATAAAGGTAAATCA TERM 330 344853 - 344882 + G 71 -8 -3.31461 | opp_overlap 344852 344853, overlap 344856 CATTTCTTAAAAAAG GAATTGAAATGG GAGTTG CCAATTCAATTC TTATAAAGGTAAATC TERM 331 344882 - 344853 - g 74 -8 -3.60762 | opp_overlap 344853 344856, overlap 344852 CATTTCTTAAAAAAG GAATTGAAATGG GAGTTG CCAATTCAATTC TTATAAAGGTAAATC eno 343868 - 345169 + | enolase TERM 332 345176 - 345190 + T 86 -5.7 -5.64006 | opp_overlap 345171 345176 CAAAAATAAATCAAA TCCCT CTAGA AGGGA TTTTTTTGCTTAAAT TERM 333 345190 - 345176 - T 73 -6.4 -4.35747 | opp_overlap 345176, overlap 345171 CAAAAATAAATCAAA TCCCTC TAG AAGGGA TTTTTTTGCTTAAAT rpsI 345644 - 345234 - | 30S ribosomal protein S9 TERM 334 345486 - 345475 - G 75 -7.2 -4.19735 | opp_overlap 345474 345471 345475 TTTGTTAAAACTAAA GGCG ATAG CGCC ATTGTTCTTAAATTT rplM 346104 - 345646 - | 50S ribosomal protein L13 BAPKO_0349 346966 - 346157 - | hypothetical protein TERM 335 346561 - 346586 + g 70 -4.9 -4.66163 | opp_overlap 346561 AATCAGGCAAAGGCA TATTAAAAATC ATAG GATATTTAATA TTTTTAAATCCCACT gatB 348416 - 346959 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA 349851 - 348406 - | Glu-tRNA(Gln) amidotransferase, subunit A gatC 350137 - 349862 - | aspartyl/glutamyl-tRNA amidotransferase subunit C uvrD 352243 - 350147 - | DNA helicase BAPKO_0354 353445 - 352246 - | hypothetical protein TERM 336 352518 - 352539 + g 70 -5.3 -4.57073 | opp_overlap 352518 352519 352526, overlap 352519 CATTTAAAAAATCAA TTTTCAAAT CAAC ATTTGAAAG TTTTTGAGAAGAATA TERM 337 352908 - 352892 - G 77 -3 -5.56264 | overlap 352894 GTTAAAGATAAAAAA TCTCCT TCGCT AAGAGA AAGATTCCAAAAATT TERM 338 353059 - 353069 + g 73 -5.4 -4.64598 | opp_overlap 353059 AATAACGCTAGCAAT TCCT AAA AGGA TTTTTAACATACTTA TERM 339 353449 - 353459 + r 76 -2.6 -5.90981 | opp_overlap 353449 ATTTCCTTCCATAGA TTAA ACC TTAA TTTTTTTTAATATCA BAPKO_0355 354106 - 353456 - | hypothetical protein TERM 340 354524 - 354501 - g 83 -6.8 -4.97888 | opp_overlap 354501 354506 AAAAAAATTCAAAAA GAATACCTTA AAAT TAAGGTTTTC TGAATTCTTAAAATC TERM 341 354506 - 354519 + G 70 -5.3 -4.50943 | opp_overlap 354501, overlap 354501 AATTCAAAAAGAATA CCTTA AAAT TAAGG TTTTCTGAATTCTTA BAPKO_0356 354298 - 355716 + | fibronectin/fibrinogen-binding protein, putative pyk 355812 - 357245 + | pyruvate kinase BAPKO_0358 357314 - 358003 + | hypothetical protein rpmB 358300 - 358022 - | 50S ribosomal protein L28 BAPKO_0360 359884 - 358322 - | hypothetical protein TERM 342 360162 - 360137 - g 88 -9.3 -4.28656 | opp_overlap 360141, overlap 360141 ATTTAACATCGAAAA TAAACTTAATT TTAT AATTAAGTTTA AGAATAACATTGATC TERM 343 360158 - 360141 - g 75 -5.7 -4.71418 | opp_overlap 360141, overlap 360137 AACATCGAAAATAAA CTTAATT TTAT AATTAAG TTTAAGAATAACATT TERM 344 360247 - 360226 - g 70 -6.7 -3.91506 | TTATTTCTAAAAACA TTGGCAATA CAAA TATTACCAA CCATTTTAAATCTAT BAPKO_0361 359994 - 361127 + | hypothetical protein BAPKO_0362 362923 - 361124 - | hypothetical protein BAPKO_0363 363886 - 362936 - | hypothetical protein TERM 345 363793 - 363768 - G 84 -5.7 -5.36364 | overlap 363786 CTAAAAATAGAAAAA TTAAAATACAA AAAT TTATATTTTAA ATAAAATGTACAAAT BAPKO_0364 364408 - 363920 - | transcription factor, putative TERM 346 364055 - 364036 - G 81 -8 -4.27686 | opp_overlap 364036 364035 CAAAATCATTCAAAA TCCTTTTT TCGT AAAAAGGA AGTTCTTTTTGAGTA BAPKO_0365 365041 - 364448 - | hypothetical protein TERM 347 364484 - 364502 + g 70 -6.2 -4.13728 | opp_overlap 364484 GGTCCTAATACTAAA TTTATTTT CAT AAAATAAA TTTTCGAGATATCTA BAPKO_0366 365765 - 365034 - | hypothetical protein TERM 348 365097 - 365113 + g 100 -13.7 -3.06261 | opp_overlap 365089 365084 AATAATAGCTGTATC CGCCCGT AAA ACGGGCG TATTAAACCTTACAA TERM 349 365569 - 365599 + g 83 -8.4 -4.42743 | overlap 365582 ATTTTATCTATTTTA TTGGTAGCAAACTT AAT AAAATTGCTACCAA TTTCTATTATTTCTG ctp 367202 - 365769 - | carboxyl-terminal protease TERM 350 366040 - 366059 + g 85 -7.2 -4.87803 | TATATTAATGCTTCC TCTTCAGA AAAA TCTGAGGA TTTTATTTCCAAATC TERM 351 366201 - 366215 + g 81 -8.6 -4.07559 | GCCATAAGACTTTTC GCCTAT AAT ATAGGC TCTTTTATTGTCTTT TERM 352 366698 - 366683 - G 70 -6.2 -4.07568 | CTTTGCCCTTTAAAA GATCAA CAAC TTGATC TACCTCCATAGAAAA TERM 353 366735 - 366716 - G 86 -6.4 -5.36441 | CCTCCATAGAAAAAA CGCTCTTG CCAT CAACAGCG GTAATACAATCTCCA TERM 354 368821 - 368808 - g 93 -5.3 -5.81412 | GTTATTTAAAAAAAA GCTTT TTGA AAAGC TTAAAAAGGCTAAGG ylxH-2 367702 - 368844 + | minD-related ATP-binding protein lgt 368844 - 369815 + | prolipoprotein diacylglyceryl transferase BAPKO_0370 369850 - 371862 + | hypothetical protein mgsA 371958 - 372341 + | methylglyoxal synthase TERM 355 372365 - 372339 - T 100 -14 -3.05963 | overlap 372341 AGCTTGATTTTAAGA TAGGCTTTAATT TTA AATTAAAGCCTA AAAAATCAAAAATAC TERM 356 372363 - 372341 - T 90 -12.2 -3.08813 | overlap 372339 CTTGATTTTAAGATA GGCTTTAATT TTA AATTAAAGCC TAAAAAATCAAAAAT BAPKO_0373 372971 - 372384 - | lipoprotein LA7 TERM 357 372932 - 372945 + g 71 -3.9 -5.00616 | opp_overlap 372932 372943 AAAATAATACAAACC CTATT ATTA AATAG TTTTTTAAAAAACCA TERM 358 373708 - 373682 - gH 78 -6 -4.87318 | GGGAAAATCTAAAAA TTTTAATTGGAA GCC TTCCAATCGAAA CAAAAGAAAAAAATA yscI 373108 - 374484 + | putative aminopeptidase 1 BAPKO_0375 374435 - 374770 + | hypothetical protein TERM 359 374792 - 374765 - gT 100 -10 -4.81685 | opp_overlap 374768, overlap 374768 ATGAATGATCAAAAA CAATAAAGCCTC TGAA GAGGCTTTATTT TATTTTCTAATGCCC TERM 360 374768 - 374789 + GT 100 -11.7 -5.20781 | opp_overlap 374765 374768 AATGATCAAAAACAA TAAAGCCTC TGAA GAGGCTTTA TTTTATTTTCTAATG TERM 361 374789 - 374768 - gT 100 -11.7 -4.50218 | opp_overlap 374768, overlap 374765 AATGATCAAAAACAA TAAAGCCTC TGAA GAGGCTTTA TTTTATTTTCTAATG gpsA 375850 - 374792 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase BAPKO_0376 374754 - 375215 + | hypothetical protein clpA 378165 - 375868 - | ATP-dependent Clp protease, subunit A TERM 362 376112 - 376124 + g 74 -4.9 -5.04385 | opp_overlap 376122 376123 GCAAAACGATTAAGC TCATT AAA AATGA TTTTTTCAAAATCTA TERM 363 376658 - 376633 - G 70 -5.6 -4.33854 | gap 1, opp_overlap 376633, overlap 376635 ACCAATAAAAGCAAA TATGCCAATAG TACTT CTATTGGCA-A GTAAATTGAATTTTA TERM 364 376657 - 376635 - G 93 -10.7 -3.7519 | opp_overlap 376633, overlap 376633 CAATAAAAGCAAATA TGCCAATAG TACTT CTATTGGCA AGTAAATTGAATTTT tyrS 379393 - 378176 - | tyrosyl-tRNA synthetase glyS 380727 - 379390 - | glycyl-tRNA synthetase gltX 382217 - 380745 - | glutamyl-tRNA synthetase TERM 365 381751 - 381772 + g 74 -2.3 -5.63103 | CCTTCTAAAGGAATT TTAAATCTG ACAA CAGGCTTAA TTTTTTTAATTAGCA BAPKO_0382 382997 - 382230 - | hypothetical protein TERM 366 383890 - 383872 - g 72 -7.4 -3.91905 | opp_overlap 383872 383875, overlap 383867 383875 TAGAATCAAATATAA TAGGCGCT GCC AGCGCTTA TTCTGCTATCATTTT TERM 367 383872 - 383890 + G 82 -9.6 -3.51532 | opp_overlap 383872 383867 383875, overlap 383875 TAGAATCAAATATAA TAGGCGCT GCC AGCGCTTA TTCTGCTATCATTTT TERM 368 383887 - 383875 - g 73 -9.1 -2.70731 | opp_overlap 383872 383875, overlap 383872 383867 AATCAAATATAATAG GCGCT GCC AGCGC TTATTCTGCTATCAT TERM 369 383875 - 383887 + G 82 -9.1 -3.87505 | opp_overlap 383875 383872 383867, overlap 383872 AATCAAATATAATAG GCGCT GCC AGCGC TTATTCTGCTATCAT TERM 370 384166 - 384152 - g 71 -4.3 -4.9725 | overlap 384160 AGTTGTAGATAAAAA TGAAC CTAGC GTTCA GTCTATACCAAACAC BAPKO_0383 383127 - 384263 + | hypothetical protein TERM 371 384704 - 384684 - g 84 -6.9 -5.09895 | overlap 384687 GAGCTATTGAAAAAA GTAGTCAAT ATT ATTGACAAC AAACTTTTAAACATT pfs-1 384285 - 384998 + | 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative metK 384995 - 386173 + | S-adenosylmethionine synthetase BAPKO_0386 386170 - 386643 + | S-ribosylhomocysteinase BAPKO_0387 387316 - 386654 - | hypothetical protein TERM 372 387314 - 387296 - G 85 -3.2 -5.98675 | opp_overlap 387310, overlap 387307 CATAAAAACAAAAAA GAAAAAAA AGC TTCTTCTC ATAAAGAATCCTTTT pkcI 387762 - 387343 - | protein kinase C1 inhibitor mgtE 389175 - 387811 - | Mg2+ transport protein TERM 373 387873 - 387857 - G 70 -5.9 -4.29302 | GCTATATTAAAATAA GCTATCA AAG TAATAGC ATCTGCAATAGTAGT TERM 374 388738 - 388721 - G 73 -8.5 -3.02511 | opp_overlap 388732 GCTACCTTTCGAATA TGGTCAA GAGC TTGACCA ACGGTGAAATCTTCT BAPKO_0390 390653 - 389229 - | hypothetical protein TERM 375 390479 - 390465 - G 90 -5.7 -5.62045 | opp_overlap 390465 ATAGACAAGAAAAAA GCTTG ACATA CAAGC TTGCATCTGATCTAT bmpB-1 391792 - 390767 - | basic membrane protein B bmpA-2 392898 - 391879 - | basic membrane protein A BAPKO_0393 393100 - 392942 - | hypothetical protein BAPKO_0394 393385 - 393299 - | hypothetical protein BAPKO_0395 394582 - 393563 - | hypothetical protein BAPKO_0396 394904 - 394626 - | hypothetical protein BAPKO_0397 395066 - 394980 - | hypothetical protein BAPKO_0398 396263 - 395244 - | hypothetical protein bmpC 397368 - 396307 - | basic membrane protein C TERM 376 396730 - 396759 + g 78 -4.4 -5.55664 | gap 1, overlap 396730 396729 396740 CCGAGCCATTTCTTT GC-CTTTCTCTTT ATCAA AAAGAGAGGGCGC TTTTTTTGATACTAA TERM 377 397513 - 397497 - R 77 -6.7 -4.70626 | opp_overlap 397490 397500 CAATAACCCTAAAAA TAATACT TTT AGTATTA ATAAAAACATGGTGA TERM 378 397556 - 397521 - R 83 -6.4 -5.15167 | gap 1, overlap 397523 TAGTATTAATAAAAA CATGGTGATA-AGAAAA TTT TTTCCTACATCACCATA ATACCCAAATTTAAA TERM 379 397554 - 397523 - R 73 -6.8 -4.19587 | gap 1, overlap 397521 GTATTAATAAAAACA TGGTGATA-AGAAAA TTT TTTCCTACATCACCA TAATACCCAAATTTA TERM 380 397577 - 397606 + r 100 -13.9 -2.71681 | opp_overlap 397573 397572, overlap 397585 CAAATTTAAACCCTT TTGCAAGATTAAT CTAG ATTAATCTTGCAA TAATTAAAAGACTTA bmpD 398707 - 397682 - | basic membrane protein D TERM 381 398804 - 398784 - R 100 -12.7 -5.69379 | opp_overlap 398784 ATATAAGCAAAAAAA GACACCTTT TTT AAAGGTGTC TTTTTACCATCTATA TERM 382 398784 - 398804 + r 100 -12.7 -4.65838 | opp_overlap 398784 ATATAAGCAAAAAAA GACACCTTT TTT AAAGGTGTC TTTTTACCATCTATA rpsG 399281 - 398808 - | 30S ribosomal protein S7 rpsL 399680 - 399306 - | 30S ribosomal protein S12 rpoC 403881 - 399748 - | DNA-directed RNA polymerase subunit beta' TERM 383 400975 - 400960 - G 72 -6.2 -4.2704 | opp_overlap 400959 400960 CTTATTATTAACAAA TAAAGG AATT CCTTTA ATTACTCTTTGAGAA TERM 384 402227 - 402239 + g 84 -3.4 -5.88197 | TCATTAAATATAACC CTAC CAGCT GTAG TTTTTTTATATTTGC rpoB 407364 - 403897 - | DNA-directed RNA polymerase subunit beta TERM 385 404360 - 404376 + g 81 -2.9 -5.85011 | opp_overlap 404360 AAAATTTCTTTAGAA GTTGGAT TAA ACCCAGC TTTTTTTAATTTTTC rplL 407821 - 407447 - | 50S ribosomal protein L7/L12 rplJ 408380 - 407892 - | 50S ribosomal protein L10 TERM 386 408136 - 408095 - G 73 -3.2 -5.4588 | opp_overlap 408100 CAAAATCATAAAAAA TTTTTGCTATTACATTAG CCTCTT CTAATGCAGTAACAACAA CTGTAGGGCCAACCA rplA 409065 - 408385 - | 50S ribosomal protein L1 rplK 409496 - 409065 - | 50S ribosomal protein L11 nusG 410104 - 409550 - | transcription antitermination factor TERM 387 410054 - 410076 + g 71 -7.8 -3.61178 | TATGTCTTGCTCTAT CTTTTTCTCA TAT TGAGAATAAG TTTGAACTACATACC secE 410298 - 410128 - | preprotein translocase subunit SecE rpmG 410585 - 410406 - | 50S ribosomal protein L33 BAPKO_0414 411607 - 410750 - | hypothetical protein BAPKO_0415 412643 - 411621 - | putative lipoprotein TERM 388 412727 - 412701 - H 85 -9.8 -3.25361 | opp_overlap 412698 AAATGTACAACTCAA TTTAAAAAAATT ATC AATTTTTTTAAA TACTAACTTAACATG BAPKO_0416 412990 - 413601 + | hypothetical protein BAPKO_0417 415313 - 413658 - | hypothetical protein TERM 389 415450 - 415479 + G 100 -13.9 -3.63515 | opp_overlap 415452 TTATTCCTTTCTTAA TATTTTCAATTCC ATTA GGAATTGAAAATA TTATTGAAAATAAAA TERM 390 415477 - 415452 - g 95 -12.1 -3.01791 | opp_overlap 415450 ATTCCTTTCTTAATA TTTTCAATTCC ATTA GGAATTGAAAA TATTATTGAAAATAA TERM 391 416053 - 416012 - g 72 -3.3 -5.29782 | opp_overlap 416025 TAGATTGACAAAAAA TTTTAAAATGATATATAAA GGAA TCTTTGTATCATTTCAAAA CATAATATTTTCAGG BAPKO_0418 415314 - 416516 + | glutamate transporter, putative proS 417994 - 416528 - | prolyl-tRNA synthetase TERM 392 417321 - 417334 + g 73 -3.1 -5.48063 | gap 1 AAATAATGAGATGTG GCGGCT TGA AGC-GC TTTTTTATCTTGCAT TERM 393 417918 - 417928 + g 73 -5.4 -4.65838 | opp_overlap 417918, overlap 417907 ACAGGGCTGTAATCA GCAA GTT TTGC TTTTTGCACTATATC BAPKO_0420 418724 - 418047 - | hypothetical protein TERM 394 418414 - 418450 + g 75 -8.4 -3.38581 | opp_overlap 418414, overlap 418412 CGCCCTCTTCTTAAA TGATTAATTTTAAATT CCTTA ACTTTAAAATTAATCA TCTTTAAAAGTTCGT TERM 395 418450 - 418414 - G 80 -9.1 -3.53012 | opp_overlap 418412 418414 CGCCCTCTTCTTAAA TGATTAATTTTAAATTC CTT AACTTTAAAATTAATCA TCTTTAAAAGTTCGT BAPKO_0421 418888 - 419304 + | hypothetical protein BAPKO_0422 419301 - 419906 + | hypothetical protein TERM 396 419938 - 419928 - g 71 -2.6 -5.43621 | ATAAATGATAAAAAA TTTT AAA AAAA TACATATTTTAACAT BAPKO_0423 419917 - 420528 + | hypothetical protein TERM 397 420555 - 420578 + T 100 -14 -4.25104 | opp_overlap 420555 420573 AATTGGCAATTAAAA TCAAGCTCAC ACAA GTGAGCTTGA TTTTAATCAAAACCA TERM 398 420578 - 420555 - T 100 -14 -4.41895 | opp_overlap 420555, overlap 420573 AATTGGCAATTAAAA TCAAGCTCAC ACAA GTGAGCTTGA TTTTAATCAAAACCA manA 421696 - 420581 - | mannose-6-phosphate isomerase fruA-1 423574 - 421697 - | PTS system, fructose-specific IIABC component TERM 399 423619 - 423601 - H 72 -7.6 -3.56844 | overlap 423594 423599 423611 CCTAGCAATTAAACA TATTGTAT AAT ATACAATA AAATTGCATACTACA BAPKO_0426 423746 - 424375 + | hypothetical protein nucA 424372 - 425253 + | endonuclease precursor BAPKO_0428 425250 - 426029 + | hypothetical protein BAPKO_0429 426637 - 426017 - | hypothetical protein TERM 400 426585 - 426575 - G 71 -2.6 -5.38348 | opp_overlap 426575, overlap 426568 AAAAATATGAAAAAA TTTT CTA AAAA TTTCATACTTAACAT TERM 401 426789 - 426767 - H 70 -8 -3.3344 | opp_overlap 426764 426766 426772, overlap 426772 ACCCAAGTCTTATAA TAAAATTATT TAT AATAATTTTA CAATTTTTTTAAAAA TERM 402 427721 - 427711 - g 78 -2.6 -5.75538 | TGTAAAAAAGAAAAA TTTA AAT TAAA AAATAAATATAAGTT cheR-2 426883 - 427740 + | chemotaxis protein methyltransferase TERM 403 428188 - 428176 - g 71 -2.7 -5.49579 | CTATAAAAAACAAAA TTGTC CGC AACAA GGATATAAAAATAAA cheB-1 427773 - 428900 + | protein-glutamate methylesterase traB 428926 - 430140 + | pheromone shutdown protein TERM 404 430447 - 430472 + G 74 -6.3 -4.59109 | opp_overlap 430447 430462 GATTTCCGCGCAATA TTTGTCAAG CCAAAGCT CTTGACAAA TTTTTGCCAAATGTA adk 430179 - 430814 + | adenylate kinase TERM 405 431357 - 431333 - g 71 -7.3 -3.85184 | TGGAAAATATTCAAA TACTCCTGAAT TTT ATTCAGAAATA ACAATAGGGGGACGA BAPKO_0434 430815 - 431864 + | hypothetical protein rrp-1 432819 - 431896 - | response regulatory protein TERM 406 431932 - 431965 + g 100 -13.5 -3.20367 | gap 1, opp_overlap 431940, overlap 431930 431933 431940 TCCAGAAACTTTAGC T-TCATAAAGCTTGCT ATC AGCAAGCTTTATGATA TTAGTAAAATTGTTA TERM 407 431933 - 431963 + g 100 -18.6 -3.15841 | opp_overlap 431940, overlap 431930 431932 431940 CCAGAAACTTTAGCT TCATAAAGCTTGCT ATC AGCAAGCTTTATGA TATTAGTAAAATTGT TERM 408 431940 - 431956 + g 95 -10.9 -4.07455 | opp_overlap 431940, overlap 431930 431933 431932 CTTTAGCTTCATAAA GCTTGCT ATC AGCAAGC TTTATGATATTAGTA TERM 409 431956 - 431940 - G 93 -10.9 -3.87815 | opp_overlap 431930 431933 431932 431940 CTTTAGCTTCATAAA GCTTGCT ATC AGCAAGC TTTATGATATTAGTA BAPKO_0436 437303 - 432822 - | sensory transduction histidine kinase/response regulator TERM 410 435173 - 435159 - G 71 -4.4 -4.87626 | overlap 435152 TGTTAACACTAAAAA TTTAAA ATT TTTAAA CCTAATGTCTTTGGA TERM 411 435388 - 435377 - G 72 -5.8 -4.59853 | opp_overlap 435377 TTAATTCTTCAAAAA CAGC TGCA GCTG TATACTCATCACTAA TERM 412 435800 - 435810 + g 70 -5.4 -4.56597 | opp_overlap 435800 CTTCAACATAATCTA TTGG ATA CCAA TTTTTAACAGCAAGA TERM 413 436522 - 436488 - G 95 -12.3 -3.64142 | opp_overlap 436486 436483, overlap 436478 436489 TAAAATACCAGACAA CTCCCCCTTTGAATT AATAA AACTCAAAGGGGGAT AATCGTTATATAAAC TERM 414 436521 - 436489 - G 100 -15.8 -2.77401 | opp_overlap 436486 436483, overlap 436488 436478 AAAATACCAGACAAC TCCCCCTTTGAATT AATAA AACTCAAAGGGGGA TAATCGTTATATAAA TERM 415 439896 - 439907 + r 75 -7.2 -4.2354 | CAGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 416 440334 - 440314 - R 72 -8.3 -3.23332 | opp_overlap 440312 440316 440333, overlap 440312 440316 TATTTAGATAATAGA TAGCTAGCA TCT TGCTAGCTG GATTACTCCATTCGG TERM 417 440316 - 440332 + r 82 -10.9 -2.57721 | opp_overlap 440312 440316 440314, overlap 440312 TTTAGATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC TERM 418 440332 - 440316 - R 90 -10.9 -3.17443 | opp_overlap 440312 440316, overlap 440312 440314 TTTAGATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC TERM 419 440556 - 440596 + r 95 -10.9 -3.5594 | opp_overlap 440555 440552, overlap 440564 CAATATATATATTAT TTTTTATATTATTTGAATG TTT TATTCAAATAATATAAACA TTTAAAAAATAAATT TERM 420 443133 - 443144 + r 75 -7.2 -4.2354 | CAGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 421 443571 - 443551 - R 74 -8.3 -3.35723 | opp_overlap 443549 443553 443570, overlap 443549 443553 TATTTAAATAATAGA TAGCTAGCA TCT TGCTAGCTG GATTACTCCATTCGG TERM 422 443553 - 443569 + r 82 -10.9 -2.57721 | opp_overlap 443549 443553 443551, overlap 443549 TTTAAATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC TERM 423 443569 - 443553 - R 90 -10.9 -3.23555 | opp_overlap 443549 443553, overlap 443549 443551 TTTAAATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC BAPKO_0441 444744 - 443902 - | hydrolase TERM 424 444800 - 444780 - R 73 -7.1 -4.09173 | opp_overlap 444783, overlap 444783 ATATAATATCACAAA TAATTTATT CTC AATAAATTA CTCTTAAAGAGAACA TERM 425 444838 - 444867 + r 72 -7.5 -3.53444 | opp_overlap 444838 AAAATTTAATAACAA TATATTTTTTGAA ACTT TTTAAAAAATATA TTTAAACCAAAATCA mag 445440 - 444880 - | 3-methyladenine DNA glycosylase TERM 426 445795 - 445750 - H 70 -7.3 -3.79451 | opp_overlap 445748 445750 AAAACAAAAGTAGAA TTATTTCTTAATTTAACTTTT TAGG AAAAATTGAATAAAGAAATAA TGTTATAACTTTAAA TERM 427 446032 - 445981 - g 91 -9.8 -4.27774 | gap 1, opp_overlap 445993, overlap 445967 445984 445986 ATGAAAAATTACAAA CAATATGCAACATCTCTTGTATCTT TTC AAAATACAAGAGATGTTG-ACAAAG CTAGAAGATTTAAAT TERM 428 446031 - 445984 - g 100 -14.6 -4.22276 | gap 1, opp_overlap 445993, overlap 445967 445981 445986 AAAAATTACAAACAA TATG-CAACATCTCTTGTATCTT TTC AAAATACAAGAGATGTTGACAAA GCTAGAAGATTTAAA TERM 429 446029 - 445986 - g 100 -17.2 -3.67393 | gap 1, opp_overlap 445993, overlap 445967 445984 445981 AAATTACAAACAATA TG-CAACATCTCTTGTATCTT TTC AAAATACAAGAGATGTTGACA AAGCTAGAAGATTTA TERM 430 445993 - 446021 + G 84 -10.5 -3.02144 | opp_overlap 445967 445986 445984 445981 AAACAATATGCAACA TCTCTTGTATCTT TTC AAAATACAAGAGA TGTTGACAAAGCTAG BAPKO_0443 445966 - 446049 + | hypothetical protein TERM 431 446253 - 446285 + T 73 -7.9 -3.73873 | opp_overlap 446254 446255, overlap 446254 TAGGGTATATTTACA ATGCAATTTCAATTT TAA AAATTGAAATTGCCG TTCTATTAGATTTAA TERM 432 446254 - 446284 + T 85 -11.4 -2.83601 | opp_overlap 446254 446255, overlap 446253 AGGGTATATTTACAA TGCAATTTCAATTT TAA AAATTGAAATTGCC GTTCTATTAGATTTA TERM 433 446284 - 446254 - T 93 -11.4 -3.39505 | opp_overlap 446254 446253, overlap 446255 AGGGTATATTTACAA TGCAATTTCAATTT TAA AAATTGAAATTGCC GTTCTATTAGATTTA TERM 434 446283 - 446255 - T 100 -14.9 -2.63382 | opp_overlap 446254 446253, overlap 446254 GGGTATATTTACAAT GCAATTTCAATTT TAA AAATTGAAATTGC CGTTCTATTAGATTT TERM 435 447115 - 447127 + T 73 -9.1 -2.89837 | overlap 447111 TACTCTATCGCTTGT GCGAG CCC CTCGC TAATTCCTTTGAGCT TERM 436 448212 - 448228 + T 83 -10.9 -2.62396 | TCGAACCCTTGACCC TCGGCTT GCA AAGCCGA TGCTCTAGCCAACTG TERM 437 449344 - 449360 + T 79 -8.7 -3.82117 | opp_overlap 449341, overlap 449341 449337 449343 GTTTCCAACATAGCT CCACAGT TGA GCTGTGG TATTTTATGCATAGA BAPKO_0448 450729 - 450181 - | hypothetical protein BAPKO_0449 451496 - 450819 - | hypothetical protein BAPKO_0450 451709 - 452026 + | hypothetical protein BAPKO_0451 452446 - 452057 - | hypothetical protein BAPKO_0452 452573 - 453169 + | hypothetical protein TERM 438 453493 - 453477 - g 86 -4.5 -5.84381 | TTATTAATAAAAAAA TAAAAGT CAA ACCTTTA AATCATTTTAAATTA TERM 439 453884 - 453869 - g 79 -4.8 -5.52986 | opp_overlap 453869 AGCTCATTAAAAAAA GTTTTT AAAG AAAAAC TTTTGAATACAAAAA BAPKO_0453 453278 - 454030 + | chromosome segregation protein, putative TERM 440 454130 - 454120 - g 84 -4 -5.85178 | overlap 454127 AATATCGAAAAAAAA GAAA TTA TTTC AATTGAAAGAAAAAA TERM 441 454402 - 454368 - g 100 -21 -3.18768 | opp_overlap 454371, overlap 454371 TTTAATATCAAGATA TAAGCTGCTTGTCGAA AAT TCCGACAAGCAGCTTA CTATAGAAAAACTAC TERM 442 454399 - 454371 - g 100 -18.3 -3.72396 | opp_overlap 454371, overlap 454368 AATATCAAGATATAA GCTGCTTGTCGAA AAT TCCGACAAGCAGC TTACTATAGAAAAAC TERM 443 454371 - 454399 + G 100 -16.1 -3.25823 | opp_overlap 454368 454371 AATATCAAGATATAA GCTGCTTGTCGAA AAT TCCGACAAGCAGC TTACTATAGAAAAAC TERM 444 454513 - 454493 - g 81 -8.5 -4.24002 | opp_overlap 454497 454500 454511, overlap 454497 454499 TTCTAAATGGTAAAA TAAATTCTT TAA AAGAATTTA AAATTGTTTATAAAA TERM 445 454509 - 454497 - g 70 -4.9 -4.69559 | opp_overlap 454497 454500, overlap 454493 454499 AAATGGTAAAATAAA TTCTT TAA AAGAA TTTAAAATTGTTTAT BAPKO_0454 454033 - 454746 + | hypothetical protein TERM 446 454761 - 454795 + T 89 -9 -4.65933 | opp_overlap 454764 454770, overlap 454764 454770 454789 454794 AATCAACAGCTGCAC CAATAAAAATATAAAT TTT ATTTATATTTTTATTA TTTGTTTTACAAATA TERM 447 454764 - 454792 + T 100 -10.7 -4.43397 | opp_overlap 454764 454770, overlap 454761 454770 454789 CAACAGCTGCACCAA TAAAAATATAAAT TTT ATTTATATTTTTA TTATTTGTTTTACAA TERM 448 454792 - 454764 - T 87 -10.7 -3.16668 | opp_overlap 454764 454761 454770 454789, overlap 454770 CAACAGCTGCACCAA TAAAAATATAAAT TTT ATTTATATTTTTA TTATTTGTTTTACAA TERM 449 454786 - 454770 - T 78 -5.3 -5.1356 | opp_overlap 454770 454764 454761, overlap 454764 CTGCACCAATAAAAA TATAAAT TTT ATTTATA TTTTTATTATTTGTT TERM 450 454770 - 454786 + T 81 -5.3 -5.44198 | opp_overlap 454764 454770, overlap 454764 454761 CTGCACCAATAAAAA TATAAAT TTT ATTTATA TTTTTATTATTTGTT spo0J 455816 - 455034 - | stage 0 sporulation protein J TERM 451 455242 - 455264 + g 86 -2.1 -6.13 | overlap 455256 AAATTTTTAACATAT TTTTCTG CGTCTCTTA CAGAAAA TTTTTTTTTCAGTAT TERM 452 455891 - 455912 + G 95 -11.7 -3.05384 | opp_overlap 455891 455910, overlap 455894 AAGAACAAAAAAAAA GAATGTTCC ACGT GGAACATTC TTAAATAAAAAAACC TERM 453 455912 - 455891 - g 100 -11.7 -6.44931 | opp_overlap 455891 455894, overlap 455910 AAGAACAAAAAAAAA GAATGTTCC ACGT GGAACATTC TTAAATAAAAAAACC TERM 454 455894 - 455909 + G 71 -7.6 -3.67597 | opp_overlap 455891, overlap 455891 AACAAAAAAAAAGAA TGTTCC ACGT GGAACA TTCTTAAATAAAAAA BAPKO_0456 455862 - 455951 + | hypothetical protein gyrA 458366 - 455934 - | DNA gyrase, subunit A TERM 455 457424 - 457438 + g 83 -8.6 -4.27316 | opp_overlap 457423 457421 457424 457426 AATTCATAATAACAT GAGGAT CAA ATCCTC TTTTAACTTCAAGAA TERM 456 457438 - 457424 - G 70 -8.6 -2.69661 | opp_overlap 457424, overlap 457423 457421 457426 AATTCATAATAACAT GAGGAT CAA ATCCTC TTTTAACTTCAAGAA gyrB 460282 - 458378 - | DNA gyrase, subunit B TERM 457 458701 - 458720 + g 88 -9.4 -4.32804 | TATAAAGAGGAGGCA TGGCTATA TATA TATAGCCA TTTTCAATTAATTCT TERM 458 459450 - 459438 - G 77 -7.7 -4.11394 | opp_overlap 459447, overlap 459447 AGGCCACTTCTAAAA CCCAT AAC ATGGG TCCCCCCTTCTCTTG TERM 459 459630 - 459652 + g 86 -6.4 -5.27335 | opp_overlap 459630, overlap 459631 AAAGATTTTATACCA CCTTCAAAAT AAA ATTTTGAAGA TTTTTCTTTACCAAA TERM 460 459652 - 459630 - G 70 -8.6 -2.64987 | opp_overlap 459630 459631 AAAGATTTTATACCA CCTTCAAAAT AAA ATTTTGAAGA TTTTTCTTTACCAAA TERM 461 459631 - 459651 + g 89 -9.9 -3.75678 | opp_overlap 459630, overlap 459630 AAGATTTTATACCAC CTTCAAAAT AAA ATTTTGAAG ATTTTTCTTTACCAA TERM 462 460697 - 460672 - g 78 -8.3 -4.0056 | opp_overlap 460670 460672 460675, overlap 460675 AGAAATACTCACAAA CAATGGCTACG ATAA CGTGACCATTG TATTTACAAATCAAT TERM 463 460672 - 460697 + G 73 -8.3 -3.36694 | opp_overlap 460672 460675, overlap 460670 460675 AGAAATACTCACAAA CAATGGCTACG ATAA CGTGACCATTG TATTTACAAATCAAT TERM 464 461761 - 461730 - g 75 -7.4 -4.22276 | AAAAACCAGAAATAA CAAAAGCTAGGCAT ATTT ATGCATACCTTTTG AGGAATTTTACAGAG dnaA 460469 - 461926 + | chromosomal replication initiator protein TERM 465 462445 - 462430 - g 79 -3.4 -5.60993 | overlap 462411 GTTTTTACAAAAAAA TTAAAA TAGC TTTTAA TGAGAATAACAGCAA dnaN 462159 - 463319 + | DNA polymerase III, subunit beta BAPKO_0461 463411 - 463710 + | hypothetical protein TERM 466 463755 - 463782 + F 71 -5.6 -4.72272 | TACCATGGTAGTGTT CAATTTGCAGCT TACT AGCAGAAAATTG TTTTTAATGGAGGAG rpmH 463802 - 463957 + | 50S ribosomal protein L34 rnpA 463938 - 464273 + | ribonuclease P protein component TERM 467 464464 - 464447 - g 81 -7.1 -4.81212 | opp_overlap 464446, overlap 464442 TTGATGATAATAAAA TGCTTTT AAGT AAAAGCA ATAACTTTAATTTGA TERM 468 465306 - 465325 + G 70 -2.2 -5.43866 | TTATGATGTTATACC TAATTGGG GGCT TTCAATTA TTTTTTTGACAATTG TERM 469 465641 - 465664 + G 71 -3.9 -5.02645 | TATCTATCGGTGACA GCGTATATC ATTTTG GATATAAGC TTTATTTTGTTTCTT BAPKO_0464 464284 - 465918 + | putative inner membrane protein translocase component YidC jag 465932 - 466660 + | spoIIIJ-associtated protein BAPKO_0466 466704 - 467771 + | nucleotide sugar epimerase TERM 470 468422 - 468410 - g 74 -4.9 -5.07107 | overlap 468399 GAAATTTCTAAAAAA TTCTT AGA AAGAA TGGCAAAAATTGAAA fba 467933 - 469012 + | fructose-bisphosphate aldolase TERM 471 469037 - 469010 - T 72 -8.8 -2.64464 | opp_overlap 469014, overlap 468999 469009 469014 AATATTAATAGGAAT TAAATAAAAATT CATT AATTTTTATTTA CAAGCTGCTTTTTGA TERM 472 469041 - 469057 + T 90 -6.5 -5.74288 | opp_overlap 469041 AATTTTTATTTACAA GCTGCTT TTT GAGCGGC TTTTTTATTATTTGT aspS 471179 - 469419 - | aspartyl-tRNA synthetase TERM 473 469973 - 469987 + g 71 -7.2 -3.77136 | TTCTAATTTGACCCA TTGCTT TGC AAGCAA TTTCCCATTTGTTAT TERM 474 470966 - 470990 + g 78 -4.4 -5.49579 | TTTTAATCAATAATC CTTGAATTTT AATGC AATATTCAAG TTTTATTTTTTCTAC napA-1 473288 - 471183 - | Na+/H+ antiporter TERM 475 471545 - 471533 - G 70 -6.3 -4.12188 | TTATTACGCTTAAAA GTTCT CTT AGAAC ATCCGCCTTATTGCT TERM 476 472342 - 472332 - G 74 -4 -5.252 | opp_overlap 472332 GATTGGGATAAAAAA TCTT TCA AAGA TTGTTAGTTTGTCTT TERM 477 472607 - 472639 + g 100 -15.9 -3.6968 | opp_overlap 472616, overlap 472606 TTTTAATTGAGCTTG CTATATCAAGATCTG ATA TAGATCTTGATATAG TTATTACACTTGTAA TERM 478 473221 - 473186 - G 100 -16.5 -3.39327 | opp_overlap 473186 473191, overlap 473191 TTGCCAGACTCATAA CAAAAGATGACATTG TTGTCT CAATGTCATCTTTTG TTGAGTATGAAAATA TERM 479 473186 - 473221 + g 100 -16.5 -3.12668 | opp_overlap 473186 473191, overlap 473191 TTGCCAGACTCATAA CAAAAGATGACATTG TTGTCT CAATGTCATCTTTTG TTGAGTATGAAAATA TERM 480 473191 - 473216 + g 100 -10.6 -4.70169 | opp_overlap 473191 473186, overlap 473186 AGACTCATAACAAAA GATGACATTG TTGTCT CAATGTCATC TTTTGTTGAGTATGA TERM 481 473216 - 473191 - G 100 -10.6 -4.79955 | opp_overlap 473186 473191, overlap 473186 AGACTCATAACAAAA GATGACATTG TTGTCT CAATGTCATC TTTTGTTGAGTATGA ptsH-1 473566 - 473291 - | phosphocarrier protein HPr BAPKO_0471 473872 - 473579 - | hypothetical protein TERM 482 473777 - 473794 + g 78 -5.7 -4.98758 | ATTTTCTACATGTTT TTTGATA TGAG TATCAAA TTTTTCTAGCTTTTT ntrA 475121 - 473862 - | RNA polymerase sigma-54 factor TERM 483 474067 - 474080 + g 70 -6.7 -3.98683 | opp_overlap 474067 474065 TTTGCTCCACCAACA GAGCT AAAG AGCTC TTTGATTAATATGGT TERM 484 474681 - 474694 + g 71 -3.9 -5.01676 | TATTGGATCAAATTT TTGAA TAAG TTCAA TTATTTTTTTTACTT TERM 485 475042 - 475058 + g 77 -5.3 -5.06472 | TGTGTTAATTCTTTT TTATTAA GAC TTAATAA TTTTATTGTTTGTAT BAPKO_0473 475657 - 475124 - | chromate transport protein, putative BAPKO_0474 476259 - 475654 - | hypothetical protein TERM 486 475737 - 475751 + g 72 -5.8 -4.58698 | AAAAGAATATTAGCA GAATAT ATG ATATTC TTATTTTTAATTTAA TERM 487 475961 - 475941 - G 80 -7.7 -4.56914 | CCAGGTAAAGGAAAA CCATTATTA TTG CAATAATGG AAGGTAAAATTCCGG TERM 488 476640 - 476607 - g 77 -6.3 -4.75063 | gap 1, opp_overlap 476607 476617, overlap 476617 AGAAAATTGGAAAAA TCTTATTTAAGACTTT GGA AAAGTCT-AAATTAGA GGAGAGGTTAGAGGC BAPKO_0475 476471 - 477313 + | hypothetical protein BAPKO_0476 477404 - 477288 - | hypothetical protein BAPKO_0477 478458 - 477310 - | lipopolysaccharide biosynthesis-related protein TERM 489 478225 - 478235 + gH 74 -2.6 -5.62288 | TTTATAGCTTTGTAT TATT TTA AATA TTTTTCTTTTGTTGG TERM 490 478300 - 478326 + gH 74 -3.8 -5.2696 | TTGAATAGATGAGCA TCTGTAAACG TTTTTTT CGTTTAAAGA TTTTTTGGATTTTGG TERM 491 478682 - 478701 + G 73 -3 -5.42164 | overlap 478680 478682 ACTGTTTTCTAGGTC TTTTTTTT CAGA AAAAGAAA TTTTTATTGTTTATG BAPKO_0478 478533 - 479504 + | hypothetical protein TERM 492 479883 - 479866 - g 71 -4.2 -5.04868 | CTAAATTAAATAAAA TTGAAG GAAGAT CTTCAA AGATTAAAAATTTAG BAPKO_0479 479508 - 480146 + | hypothetical protein uvrC 481962 - 480235 - | excinuclease ABC, subunit C BAPKO_0480 480209 - 480352 + | hypothetical protein TERM 493 482085 - 482105 + FH 78 -7.7 -4.21827 | opp_overlap 482064 482087 GATATAATATTGTAA CATAAGACA GTT TGTTTTATG TTTTGAGGTATTTAA TERM 494 482302 - 482331 + G 71 -7.3 -3.78026 | overlap 482300 GGATGTGAGGGGTTT GCTTGGTATTTAT TTAG ATAGATACAAAGC TGTTTTAGATTTAAA BAPKO_0482 482153 - 483670 + | hypothetical protein TERM 495 484100 - 484076 - g 80 -8.6 -3.97444 | overlap 484077 AGGGAATAAAGACAA GGCCTCGAAA TTATT TTTCGAGGCT AGAGATTTGGATCAA TERM 496 484099 - 484077 - g 95 -12.1 -2.97382 | overlap 484076 GGGAATAAAGACAAG GCCTCGAAA TTATT TTTCGAGGC TAGAGATTTGGATCA BAPKO_0483 483663 - 484973 + | hypothetical protein BAPKO_0486 486024 - 485299 - | putative lipoprotein TERM 497 486031 - 486070 + H 95 -11.2 -3.67305 | opp_overlap 486049 486050 486053, overlap 486049 486050 ATTTTCCATTGAATG TTTTTATTGTAATAAATA GTAA TTTTTATTACAATAAAAA TTAATTATTTGTGTC BAPKO_0489 486225 - 486536 + | hypothetical protein TERM 498 488234 - 488206 - g 100 -10.5 -4.82901 | opp_overlap 488215 TGTGTTTCAGAAAAA TTTCAAAAGCCTT GAA AAGGATTTTGAAA AATTAGAAACTGTAA dnaX 486587 - 488287 + | DNA polymerase III subunits gamma and tau BAPKO_0491 488292 - 488591 + | hypothetical protein ndk 488761 - 489270 + | nucleoside-diphosphate kinase TERM 499 490020 - 490032 + G 70 -4.9 -4.64763 | opp_overlap 490020 ATAGCAAAATAAAAG GAAAA GGA TTTTC TTATTTTTTAAATAG BAPKO_0493 489566 - 490093 + | hypothetical protein BAPKO_0494 490090 - 490785 + | hypothetical protein BAPKO_0495 490754 - 491554 + | ABC transporter, ATP-binding protein BAPKO_0496 491551 - 492240 + | hypothetical protein TERM 500 492590 - 492603 + G 70 -5.3 -4.54727 | opp_overlap 492597, overlap 492581 492597 TTCTCAGATTTTTTA GGATT AACA AATCC TTTTGCTTTCGCAAA BAPKO_0497 492242 - 492988 + | hypothetical protein lspA 492999 - 493511 + | signal peptidase II BAPKO_0499 493508 - 493735 + | hypothetical protein BAPKO_0500 493749 - 494570 + | hypothetical protein murA 494676 - 495959 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 501 496371 - 496341 - f 71 -8.6 -2.97747 | opp_overlap 496340 496337 496341 TTTTGACATTATATA TTGATTTTTAATTT CAA AAATTATAAATCAA ATGCTTTTTTATTAT BAPKO_0502 496449 - 497813 + | hypothetical protein BAPKO_0503 498291 - 497902 - | putative lipoprotein TERM 502 498639 - 498627 - H 70 -4.7 -4.84017 | opp_overlap 498627, overlap 498615 AATTTTTTAGAAAAA CACGC AGT GCGGG TCAATTTCTAAAAAT TERM 503 498640 - 498657 + H 100 -5.7 -6.32976 | opp_overlap 498615 AACACGCAGTGCGGG TCAATTT CTAA AAATTGA TTTTTTTATTTTTTT tuf 498782 - 499966 + | elongation factor Tu rpsJ 500018 - 500329 + | 30S ribosomal protein S10 rplC 500365 - 500985 + | 50S ribosomal protein L3 rplD 500995 - 501624 + | 50S ribosomal protein L4 TERM 504 501896 - 501880 - g 88 -9.5 -4.19953 | opp_overlap 501878 TAGGTAAGGGGAAAA CTTCTTC ATG GAAGAAG GCATATGTTTATCTC rplW 501645 - 501941 + | 50S ribosomal protein L23 rplB 501963 - 502796 + | 50S ribosomal protein L2 rpsS 502806 - 503084 + | 30S ribosomal protein S19 TERM 505 503136 - 503121 - g 75 -7.6 -3.92869 | opp_overlap 503120 AAGATATACAGCAAA GGGTAA AAAT TTACCC GCTTCTCCAAAAAAA rplV 503092 - 503454 + | 50S ribosomal protein L22 TERM 506 503551 - 503539 - g 77 -4.9 -5.252 | opp_overlap 503539 TATTTTGATAAAAAA TTGTA TTC TACAA TTCTTCATGAAGACT TERM 507 503711 - 503729 + G 81 -10.4 -2.66602 | opp_overlap 503708, overlap 503715 TAGGGCTTAAAGGTT CCAATCTT GAA AAGATTGG TCAATTGTTAACTAA rpsC 503458 - 504333 + | 30S ribosomal protein S3 rplP 504338 - 504754 + | 50S ribosomal protein L16 rpmC 504757 - 504957 + | 50S ribosomal protein L29 rpsQ 504960 - 505214 + | 30S ribosomal protein S17 rplN 505242 - 505610 + | 50S ribosomal protein L14 TERM 508 505907 - 505896 - g 73 -3 -5.43514 | AAAATAATGAAAAAA TAAG ATAC CTTA AAAAAAATGGACAGA rplX 505625 - 505930 + | 50S ribosomal protein L24 rplE 505936 - 506484 + | 50S ribosomal protein L5 TERM 509 506542 - 506528 - g 74 -8.6 -3.25282 | ATCAATGATTATTAA GGCTTT AAG AAAGCC TAAGTATAAAACAAG rpsN 506502 - 506687 + | 30S ribosomal protein S14 rpsH 506697 - 507095 + | 30S ribosomal protein S8 rplF 507112 - 507654 + | 50S ribosomal protein L6 rplR 507672 - 508031 + | 50S ribosomal protein L18 rpsE 508044 - 508541 + | 30S ribosomal protein S5 rpmD 508545 - 508856 + | ribosomal protein L30 rplO 508849 - 509286 + | 50S ribosomal protein L15 secY 509299 - 510603 + | preprotein translocase subunit SecY rpmJ 510616 - 510729 + | 50S ribosomal protein L36 rpsM 510747 - 511124 + | 30S ribosomal protein S13 rpsK 511152 - 511544 + | 30S ribosomal protein S11 rpoA 511560 - 512594 + | DNA-directed RNA polymerase subunit alpha rplQ 512616 - 512987 + | 50S ribosomal protein L17 BAPKO_0532 513064 - 514593 + | phosphodiesterase BAPKO_0533 514583 - 515371 + | hypothetical protein tlyA 515352 - 516143 + | hemolysin BAPKO_0535 516886 - 516140 - | hypothetical protein TERM 510 518177 - 518163 - g 78 -5.8 -4.96996 | opp_overlap 518163 TGCAAATAAAATAAA GAATTT TCC AAATTC TTATTATAATTATTT engA 516973 - 518274 + | GTP-binding protein EngA TERM 511 518714 - 518745 + G 100 -14 -3.97102 | opp_overlap 518710 518711, overlap 518707 518715 GATTGCAGTAATTTC TCTTGGCAATATAA TAAA TTATATTGCCAAGG TTATTGATTTTAGGT TERM 512 518715 - 518744 + G 100 -15.3 -2.97177 | opp_overlap 518710 518711, overlap 518714 518707 ATTGCAGTAATTTCT CTTGGCAATATAA TAAA TTATATTGCCAAG GTTATTGATTTTAGG BAPKO_0537 518271 - 519530 + | hypothetical protein BAPKO_0538 519527 - 520213 + | hypothetical protein TERM 513 520507 - 520495 - g 72 -3.4 -5.32396 | overlap 520490 AGATTAAAAACAAAA GCAA TGATT TTGC AGAGGTTGAAAAAAA TERM 514 520533 - 520523 - g 76 -4 -5.42862 | AGAGGTTGAAAAAAA GATA GCT TATC ATGATTCTATGCTTA TERM 515 520677 - 520660 - g 71 -7.1 -3.77087 | opp_overlap 520660 520659 GATTTAATACTCAAA TTGATTC GGTT GAATCAA ATTTAAATTCGGTGT TERM 516 525422 - 525401 - g 71 -4.5 -4.92314 | opp_overlap 525401, overlap 525403 ATTAATGCATAAAAA TATTTCAGA ATTT TCTGAAAAA ATTAGTTTATACAGA TERM 517 525420 - 525403 - g 75 -7.1 -4.07789 | opp_overlap 525401, overlap 525401 TAATGCATAAAAATA TTTCAGA ATTT TCTGAAA AAATTAGTTTATACA BAPKO_0539 520233 - 526721 + | hypothetical protein TERM 518 527900 - 527916 + G 72 -5.1 -4.84359 | opp_overlap 527899, overlap 527901 TATGATCAAGTAGAT GCAACTC ACG GAGTTGA TTTTTATCAAACTGA TERM 519 527901 - 527915 + G 75 -8.6 -3.50133 | opp_overlap 527899, overlap 527900 ATGATCAAGTAGATG CAACTC ACG GAGTTG ATTTTTATCAAACTG pheS 526733 - 528295 + | phenylalanyl-tRNA synthetase subunit alpha TERM 520 528509 - 528488 - g 70 -3.1 -5.27335 | opp_overlap 528488 528482 528489, overlap 528489 528492 CTCGTCAAATAAAAA CGTATTTTT TTGG AAAAATACC TTGTTATGATTTTTT TERM 521 529891 - 529904 + G 70 -6.7 -3.97622 | AATATAGGTAGTTTT GGTGA AATT TCACC TTATGTTTTAAATAA pheT 528283 - 529986 + | phenylalanyl-tRNA synthetase subunit beta trxB 530055 - 531035 + | thioredoxin reductase yacO 531796 - 531056 - | rRNA methylase TERM 522 531506 - 531517 + g 90 -3 -6.13 | opp_overlap 531506 GTCTAAAAGTAAAAT GAAA ACAT TTTC TTTTTTTTTAAATGT dnaJ-1 532892 - 531798 - | heat shock protein TERM 523 532842 - 532870 + g 73 -7.5 -3.81689 | TTTTTTTATTTCATC TTTTGAGGCTC CTTTTGA GAGCCCCAAAA TTTCATAATAATCTT dnaK-2 534799 - 532892 - | molecular chaperone DnaK TERM 524 533872 - 533902 + g 78 -7.1 -4.49937 | gap 1 ATGGTTCTTTTGTTT TTTGAACTAAATGG TCTA CCATTT-GTTCGAA TTTTGCTCTTGTTAG TERM 525 534438 - 534476 + g 76 -3.9 -5.47159 | gap 1, overlap 534426 534444 GTTTCTTTCATTTTT GTAAGAGTTGCTG-CTGA GATC TCAGGCGGCGACATTTGC TTTTTTATATTAGAA grpE 535386 - 534823 - | grpE protein BAPKO_0547 535764 - 537302 + | NH(3)-dependent NAD+ synthetase BAPKO_0548 537545 - 537724 + | hypothetical protein BAPKO_0549 538068 - 538154 + | hypothetical protein TERM 526 538639 - 538653 + G 76 -7.2 -4.33767 | AAACATTGGTAGCTA TCCTTT AAG AAAGGA TTTTAATAAGTTTAT BAPKO_0550 538208 - 539062 + | hypothetical protein BAPKO_0551 539511 - 539089 - | hypothetical protein BAPKO_0552 539616 - 541427 + | hypothetical protein TERM 527 542166 - 542185 + G 79 -6.6 -4.63993 | opp_overlap 542165, overlap 542163 AACTGTAGAAGGTAT TAGAATTT TAGG AAATTCTA TTGTTTTTTAAGCTT BAPKO_0553 541420 - 542196 + | pantothenate kinase BAPKO_0554 543178 - 542231 - | aldose reductase, putative BAPKO_0555 544073 - 543264 - | hypothetical protein TERM 528 543594 - 543621 + g 74 -5 -5.0666 | gap 1, overlap 543592 TCCCTTTGAAGGCTT TGGAAGCAGCATT CCA AATTCT-CTTCCA TTTATTTTTTCCATA BAPKO_0556 544671 - 544057 - | hypothetical protein BAPKO_0557 545981 - 544674 - | hypothetical protein TERM 529 545892 - 545873 - G 70 -8 -3.03243 | opp_overlap 545872 ATGCACCTGGGAATA TTATGAAG TAGT CTTCATAA GTAAATTCTTTTTTA phnP 546177 - 546938 + | phnP protein TERM 530 547288 - 547323 + G 73 -2.9 -5.53436 | gap 2 TTATTTTCCTAATTC TCAAGCTT-TAAG-AAG AAGA CTTGTTTATAAGCTTGA TTTTTTATCTTATGT exoA 546959 - 547726 + | exodeoxyribonuclease III TERM 531 548240 - 548229 - g 71 -4.4 -4.81863 | overlap 548224 AAATTTATAATAAAA GCAT TTTA ATGC CCAATTTAAATAAAT BAPKO_0560 547742 - 548512 + | hypothetical protein TERM 532 548918 - 548940 + G 71 -7.8 -3.56704 | opp_overlap 548917, overlap 548914 TGAATCGTTGAATAT TTTGAGAAAC TGG GCTTCTCAAA TTAGTTTCATGAAAG TERM 533 549800 - 549820 + G 76 -8.5 -3.53811 | TTGTGATCTTTCTGT TCAATTTTT GAA AAAAATTGA TTTGAAGACAATAAA TERM 534 551069 - 551089 + G 76 -8.5 -3.66784 | opp_overlap 551069 551067 TTTTAATGATAAAGA TTTTTCTTA TGT TAAGAAAAA TTATATTAAAAATAC TERM 535 551089 - 551069 - g 76 -8.5 -3.6217 | opp_overlap 551069, overlap 551067 TTTTAATGATAAAGA TTTTTCTTA TGT TAAGAAAAA TTATATTAAAAATAC BAPKO_0561 548493 - 551294 + | zinc protease, putative TERM 536 551309 - 551346 + T 70 -7.1 -3.72228 | opp_overlap 551313 551340, overlap 551307 551310 GCTTAGTTTATTTGA AGCACCCTTCTTACTTT TGAC AAAGTAAGAAGGGTAAA TATTATTTTCCCTTG TERM 537 551310 - 551345 + T 82 -10.6 -2.82253 | opp_overlap 551313 551340, overlap 551309 551307 CTTAGTTTATTTGAA GCACCCTTCTTACTTT TGAC AAAGTAAGAAGGGTAA ATATTATTTTCCCTT TERM 538 551342 - 551313 - T 100 -16.7 -2.73483 | opp_overlap 551310 551309 551307, overlap 551340 AGTTTATTTGAAGCA CCCTTCTTACTTT TGAC AAAGTAAGAAGGG TAAATATTATTTTCC BAPKO_0565 552390 - 551746 - | hypothetical protein BAPKO_0566 552743 - 552387 - | hypothetical protein TERM 539 552533 - 552557 + g 71 -4.3 -4.90525 | TATTCCCTTTTATTT TGCCATGATTT AGT AAATGTTGGCA TTTTATTTCAGCTTC TERM 540 552759 - 552784 + r 95 -9.2 -4.90917 | opp_overlap 552759 TGGAACCTCTAAAAA TGAATGCTTT TAAGTT AAAGCATTCA TTTTTGATTGAATTT TERM 541 552784 - 552759 - R 93 -9.2 -4.62471 | opp_overlap 552759 TGGAACCTCTAAAAA TGAATGCTTT TAAGTT AAAGCATTCA TTTTTGATTGAATTT TERM 542 552801 - 552822 + r 70 -6.1 -4.29953 | opp_overlap 552797, overlap 552797 TTTTGATTGAATTTT TTATAAAAA TGAT TTTTTATAA TTGTTTTAGTCGTTT BAPKO_0567 553526 - 552828 - | hypothetical protein fus-1 555642 - 553561 - | elongation factor G BAPKO_0569 555941 - 556168 + | hypothetical protein TERM 543 556220 - 556193 - f 77 -7 -4.48263 | opp_overlap 556193 556180 TAGATAACATTAAAA GCCCTTTTGTTT TTTT AAACAGGAGGGC TTATTTATGGTTGGC TERM 544 556193 - 556220 + F 100 -11.4 -4.1523 | opp_overlap 556193, overlap 556180 TAGATAACATTAAAA GCCCTTTTGTTT TTTT AAACAGGAGGGC TTATTTATGGTTGGC TERM 545 556893 - 556913 + G 80 -9.1 -3.65581 | overlap 556898 CTGTACCAAGTGGTG CGGAAGAAA TAA TTTCTTCTG TTGTTAAGGGTTAAT BAPKO_0570 556400 - 556927 + | hypothetical protein TERM 546 556917 - 556927 + F 70 -2.6 -5.59502 | TAATTTCTTCTGTTG TTAA GGG TTAA TTTTTTAATTTTTTG BAPKO_0571 557048 - 557698 + | hypothetical protein BAPKO_0572 557771 - 557905 + | hypothetical protein TERM 547 558406 - 558393 - g 82 -5.3 -5.48063 | opp_overlap 558393 AGGCAAGATAAAAAA CATTC AAGA GAATG TTTAACGGCAAGTCT TERM 548 559018 - 559038 + G 75 -7.7 -3.97834 | opp_overlap 559025 ATGTTGCGCATCTTT TTGCAAATG CAA TATTTGCAA TTTATAATAAGGTTG TERM 549 559077 - 559066 - g 70 -3 -5.24129 | TTGGTTTACAAAAAA TTCT TGAT AGAA GGGATGATATTCAAA prs 557892 - 559112 + | phosphoribosylpyrophosphate synthetase TERM 550 559283 - 559255 - g 95 -12 -3.05963 | opp_overlap 559251, overlap 559257 ATTTTGATTTCAATA TATGGCTTTTTT CTTTT AAAAAAGCCATA TCCAATTTTCAACAT TERM 551 559281 - 559257 - g 81 -10.2 -3.08813 | opp_overlap 559251, overlap 559255 TTTGATTTCAATATA TGGCTTTTTT CTTTT AAAAAAGCCA TATCCAATTTTCAAC xylB 559116 - 560480 + | xylulokinase BAPKO_0575 561209 - 560463 - | hypothetical protein coaE 561810 - 561193 - | dephospho-CoA kinase polA 564461 - 561792 - | DNA polymerase I TERM 552 563500 - 563512 + g 77 -7.7 -4.24397 | ATTGATATGTATTTA GCCTT TTT AAGGC TTTCTATTAAATTGT BAPKO_0578 564925 - 564515 - | hypothetical protein flaJ 565334 - 564915 - | flagellar protein cheY-1 565723 - 565343 - | chemotaxis response regulator TERM 553 567938 - 567918 - g 100 -9.9 -4.81851 | ATTTAAATGTAAAAA TTATGTCTT TTG AAGACATAA AAAGTTACTTAGATT lig 565973 - 567955 + | DNA ligase TERM 554 567963 - 567975 + T 70 -3.5 -5.39681 | overlap 567964 TAGATTAAGTTAGAT TTAAA AGT TTTAA TTTTTATTTAATTAT BAPKO_0582 569484 - 567979 - | hypothetical protein TERM 555 570171 - 570186 + G 72 -3.4 -5.32944 | TTTTTCAGATGATTT TATTTT AGTT AAAATA TTTTTTGATTCTGAA TERM 556 571238 - 571226 - g 74 -2.7 -5.63517 | opp_overlap 571207 TTTTTAAAGAAAAAA TAGCT TCT AACTA TGTTAATGATTGCAT TERM 557 571484 - 571496 + G 82 -2.7 -6.01369 | overlap 571485 ATGGTGAGTTTGTTT TTTCT TTT AGAAG TTTTTTTATTGTTTC BAPKO_0583 569764 - 571626 + | hypothetical protein BAPKO_0584 571613 - 571984 + | hypothetical protein BAPKO_0585 572073 - 572942 + | hypothetical protein ptsH-2 573080 - 573340 + | phosphocarrier protein HPr TERM 558 574966 - 574940 - g 70 -8.8 -2.71364 | opp_overlap 574939 TTAGGTCTTTAAGCA TGATTCCTAGTG CTA CACTTAGAATCA AATATTTGCTTAAAA ptsI 573361 - 575082 + | phosphoenolpyruvate-protein phosphatase TERM 559 575624 - 575609 - g 74 -6.1 -4.4572 | AATATCTCAAACAAA GCCTG TTACAG CAGGC AAAGATTTAGTGTTG crr 575085 - 575654 + | glucose-specific PTS system component TERM 560 575653 - 575683 + T 100 -12.8 -4.72272 | opp_overlap 575658, overlap 575658 TGCGAGTTAGAAAAT AAAAAGAGAGAGTT TGA AACTCTCTCTTTTA TTTTTAATCACAACA TERM 561 575678 - 575658 - T 100 -12.7 -5.54907 | opp_overlap 575653 575658 GTTAGAAAATAAAAA GAGAGAGTT TGA AACTCTCTC TTTTATTTTTAATCA TERM 562 575658 - 575678 + T 100 -12.7 -5.3104 | opp_overlap 575658, overlap 575653 GTTAGAAAATAAAAA GAGAGAGTT TGA AACTCTCTC TTTTATTTTTAATCA htpG 577541 - 575691 - | heat shock protein 90 TERM 563 576027 - 576042 + g 70 -7.6 -3.51556 | CTTAAGGATTTCTTT TACCCT TGTA AGGGTA TCTTTAAATTCTTCT TERM 564 576432 - 576450 + g 82 -2.4 -5.95166 | opp_overlap 576432 576433 576434, overlap 576423 576433 576434 AAATTCTTTAGAAAA CTCTGAAA ATT TTTCAGGA TTTTTTTTGCTTAGC TERM 565 577019 - 577034 + g 74 -4.8 -5.05113 | CATATTCAAGGCCTT CTTTAT TAAG ATAAAG TTTTATTTCTGTGCC TERM 566 577319 - 577335 + g 71 -8.1 -3.27674 | opp_overlap 577332, overlap 577318 TCATTCCGATTCCAT TATCCTT GAT AAGGATA CTTTTATCATCAAAT TERM 567 578803 - 578844 + G 70 -7.8 -3.34715 | gap 1 CTTATTAATTTGCTT TTTGATGATTATTTTTTAG ATTTA TTAAAAAATAATCA-CAAA TCTTTGAGAAGAATA gnd 577654 - 579048 + | 6-phosphogluconate dehydrogenase BAPKO_0591 579624 - 579079 - | hypothetical protein TERM 568 579745 - 579785 + G 100 -20.3 -5.00616 | opp_overlap 579752, overlap 579755 GAGTGGTTTTATTTT TTAACAATTGTTCTTTTTT TAA AAAAAAGAACAATTGTTAA TTTTTTAAAAAAAGA TERM 569 579778 - 579752 - g 100 -12.6 -3.62597 | opp_overlap 579745 579755 TTTATTTTTTAACAA TTGTTCTTTTTT TAA AAAAAAGAACAA TTGTTAATTTTTTAA TERM 570 579755 - 579801 + G 70 -4.9 -4.68724 | gap 1, opp_overlap 579752, overlap 579745 ATTTTTTAACAATTG TTCTTTTTTTAAAAAAAAGAAC AATT GTTAATTT-TTTAAAAAAAGAA TTTTATATTAAGTAA BAPKO_0592 579727 - 579816 + | hypothetical protein BAPKO_0593 580327 - 579809 - | hypothetical protein BAPKO_0594 580997 - 580410 - | hypothetical protein cheW-2 581210 - 581746 + | purine-binding chemotaxis protein BAPKO_0596 581759 - 582070 + | hypothetical protein cheA-1 582086 - 584227 + | chemotaxis histidine kinase TERM 571 584612 - 584593 - g 72 -5.8 -4.54404 | TAAATTAATAATAAA TAAGCTTA ATTT CAAGCTTA CAGTTGATTTATTTC cheB-2 584285 - 585442 + | protein-glutamate methylesterase TERM 572 586044 - 586034 - g 71 -4 -5.07652 | opp_overlap 586034 CGGCTGAAAATAAAA TTCT TGA AGAA TTTAGAGATAATTTA BAPKO_0599 585445 - 587217 + | hypothetical protein TERM 573 587574 - 587586 + G 78 -7.7 -4.30576 | overlap 587564 CGGGTGCTACTGGGT GGCTT GTT AAGCC TTTTAATCCTGAAGC cheY-2 587258 - 587632 + | chemotaxis response regulator pyrH 588648 - 587959 - | uridylate kinase TERM 574 587997 - 588025 + g 80 -8.4 -4.05629 | overlap 587999 AAAAATCATTATTTT TGTTGAAAACTT TTTCT AAGTTTTCAATA TTATTTCCATTTACT TERM 575 587999 - 588023 + g 76 -8.8 -3.60979 | overlap 587997 AAATCATTATTTTTG TTGAAAACTT TTTCT AAGTTTTCAA TATTATTTCCATTTA TERM 576 588323 - 588348 + g 70 -8.5 -2.50575 | overlap 588322 GCGATTAGTATTTTC CCTTTAAAAGA AAAG TTTTTTAAAGG ATTAGTGACAATTTT TERM 577 588555 - 588577 + g 70 -5 -4.77759 | opp_overlap 588556, overlap 588556 588572 CATTTTCTAGTAACC ATTTAAAAAC AAA GTTTTTAAAG TTTTTAATGAATTCT TERM 578 588556 - 588576 + g 75 -8.5 -3.45571 | opp_overlap 588556, overlap 588555 588572 ATTTTCTAGTAACCA TTTAAAAAC AAA GTTTTTAAA GTTTTTAATGAATTC TERM 579 588576 - 588556 - G 71 -8.5 -2.78018 | opp_overlap 588555 588556 588572 ATTTTCTAGTAACCA TTTAAAAAC AAA GTTTTTAAA GTTTTTAATGAATTC TERM 580 589446 - 589458 + G 71 -2.7 -5.40474 | TTTGAAGATATAATT TTTGT TAT GCAAA TTTTTTTAAAAGCCT lgtD 588861 - 589925 + | glycosyl transferase BAPKO_0604 589988 - 590794 + | ABC transporter, ATP-binding protein TERM 581 591564 - 591552 - g 90 -3.4 -5.93809 | opp_overlap 591552 GTGTTAGAAAAAAAA GCAA TTTGT TTGC TATTGTAGGATTTTT BAPKO_0605 590801 - 591652 + | hypothetical protein pyrG 591839 - 593440 + | CTP synthetase BAPKO_0607 593981 - 593457 - | hypothetical protein TERM 582 593936 - 593926 - G 70 -5.4 -4.56113 | opp_overlap 593924 593926 AATATATTAAATAAA GTCA TGC TGAC TATTAATATTAGATT TERM 583 594485 - 594506 + G 91 -10.3 -3.9461 | AAAAAAACCAATGTT CTTTTTTGG CAAC CCAAAAAAG TTATTCTTAAGCAAG BAPKO_0608 594119 - 594709 + | hypothetical protein TERM 584 595682 - 595703 + G 79 -8.9 -3.48438 | opp_overlap 595687, overlap 595678 595687 AATATGGCTTATTAT TCAAAGAAT TGTG ATTCTTTGA TTGGTTCTGATACTT mcp-1 594956 - 596128 + | methyl-accepting chemotaxis protein TERM 585 596380 - 596360 - g 100 -11.3 -5.79588 | opp_overlap 596365 TCAAAAGCAAAAAAA TGCAATATG TCA CATATTGCA TTAACAGATCATGGT dnaE 596216 - 599701 + | DNA polymerase III subunit alpha BAPKO_0611 599710 - 600291 + | hypothetical protein TERM 586 601895 - 601881 - g 71 -4.4 -4.85267 | AGAAATTATGAAAAA TTTTTA TTC TAAAAA AGTAGATATTTTGGT recG 600301 - 602361 + | DNA recombinase BAPKO_0613 603146 - 602358 - | hypothetical protein TERM 587 603533 - 603523 - g 77 -5.4 -5.09426 | GGCAATTGCAAAAAA GAAG TTT CTTC AAATAAGACAATCTT BAPKO_0614 603275 - 604624 + | hypothetical protein TERM 588 605587 - 605608 + G 100 -11.7 -5.30448 | opp_overlap 605589 605591 GAATTGATACTCATA GATATGCTG CTTA CAGCATATC TTTTTCTGTTTATTT TERM 589 605606 - 605589 - g 71 -8.5 -2.9356 | opp_overlap 605587, overlap 605591 ATTGATACTCATAGA TATGCTG CTTA CAGCATA TCTTTTTCTGTTTAT BAPKO_0615 604779 - 606125 + | hypothetical protein TERM 590 606567 - 606598 + G 76 -3.8 -5.52986 | opp_overlap 606554 TATCCAAGGGTAAAG CTTGGAGGAAATAT TGGT GTATCTCCTTTAAG TTTTTTTGATCAACT murD 606144 - 607499 + | UDP-N-acetylmuramoylalanine--D-glutamateligase femA 608539 - 607496 - | femA protein TERM 591 608142 - 608152 + g 76 -4 -5.54264 | TTTGAAGGTTGTATG TCAT CAA ATGA TTTTTTTAGATATTT metG 610723 - 608549 - | methionyl-tRNA synthetase TERM 592 610383 - 610406 + g 74 -6.2 -4.45577 | opp_overlap 610383 TCTTTTATATAACCA TTTTTTTCTA ATTT TAGGAAAAAA TTTTGTACAGTTTCT pfs-2 610882 - 611676 + | 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative TERM 593 611689 - 611743 + F 100 -14.3 -4.29907 | gap 1, opp_overlap 611696 611704, overlap 611696 TAAGAAATATTTAAT TATAT-AATGTATAAATGCATAAAAA AGTT TTTTTATGCATTTATACATTTATACA TTTATGTTGTAATAT TERM 594 611696 - 611735 + F 100 -18.4 -4.04922 | opp_overlap 611696 611704, overlap 611689 TATTTAATTATATAA TGTATAAATGCATAAAAA AGTT TTTTTATGCATTTATACA TTTATACATTTATGT TERM 595 611735 - 611696 - f 100 -18.4 -3.60661 | opp_overlap 611696 611689, overlap 611704 TATTTAATTATATAA TGTATAAATGCATAAAAA AGTT TTTTTATGCATTTATACA TTTATACATTTATGT TERM 596 611727 - 611704 - f 93 -9.8 -4.01137 | opp_overlap 611696 611689, overlap 611696 TATATAATGTATAAA TGCATAAAAA AGTT TTTTTATGCA TTTATACATTTATAC TERM 597 612502 - 612489 - g 74 -3.9 -5.24449 | GAGAAACTGAAAAAA TAAAG AATG CTTTA AATATTGTGAAGAAT TERM 598 612609 - 612623 + G 71 -8.6 -2.89995 | overlap 612608 612606 612611 GCAGAGAATCTTTGG TAGCAG GTT CTGCTA ATGTTTTAATATTTC pta 611768 - 612805 + | phosphate acetyltransferase ksgA 613633 - 612788 - | dimethyladenosine transferase TERM 599 613290 - 613312 + g 80 -7.8 -4.51196 | TTTTTATTTTCGTTT GGGTATTTTT TTA AAAAATCCCC TTTTATCAATTTAAA BAPKO_0622 614922 - 613666 - | competence locus E, putative TERM 600 613858 - 613847 - G 70 -3 -5.19003 | AAGAGAAAAAATAAA TTCA AGCT TGAA AAATAAGTTATTAAG TERM 601 615067 - 615085 + H 72 -6 -4.42962 | AAAATAAATATTCAT TCAAGCGG GCC TTGCTTGA TCTTTTTTTGGTCTA BAPKO_0623 615078 - 615752 + | hypothetical protein TERM 602 617141 - 617119 - g 80 -6.3 -4.87665 | TCTTATGGAGAAAAA GGTGAGCTT TGGGT AAGGTCACC GCAAATAATGAGTGG TERM 603 617648 - 617636 - g 70 -4.9 -4.74103 | CTCTTAAGTTAAAAA GATAT TAT ATATC TCAAAAGTACGAAGA BAPKO_0624 615778 - 617715 + | long-chain-fatty-acid CoA ligase TERM 604 617713 - 617746 + T 79 -9.9 -2.62545 | opp_overlap 617715 617717, overlap 617712 617712 617715 GATTTAAACGGATAT TAGACAAGAAAAT TTTATAGC ATTTTCTTGTCTA CATTTTTAACATATA argS 619501 - 617744 - | arginyl-tRNA synthetase TERM 605 619096 - 619108 + gT 70 -4.8 -4.73432 | CATTTCTAAGATGTC CCAC ATGCA GTGG TTTGTTTGTATTTGG BAPKO_0626 619544 - 619494 - | hypothetical protein BAPKO_0627 620146 - 619547 - | hypothetical protein mcp-2 622315 - 620168 - | methyl-accepting chemotaxis protein TERM 606 622325 - 622337 + H 70 -4.9 -4.75404 | TTTCACTAAGTTCCC TCAAA AAT TTTGA TTTTTCATAAAATTT mcp-3 622583 - 624790 + | methyl-accepting chemotaxis protein TERM 607 624842 - 624818 - T 73 -7.9 -3.67588 | opp_overlap 624807 624817 624839, overlap 624807 624839 TAAATCCTATGTAAA GGACTTCTTCT TCG AGTAAAAGTCC AGTTTTAAAGTGGAC murB 625706 - 624795 - | UDP-N-acetylmuramate dehydrogenase TERM 608 626937 - 626971 + GH 100 -11.6 -5.3104 | opp_overlap 626942, overlap 626942 GAGATAATTAAATCT GAAAATCTAAGCTTTG TTT CAAAGCTTAGATTGGC TTTTATTTTTGATGA TERM 609 626942 - 626966 + GH 100 -14.5 -3.5268 | opp_overlap 626942, overlap 626937 AATTAAATCTGAAAA TCTAAGCTTTG TTT CAAAGCTTAGA TTGGCTTTTATTTTT TERM 610 626966 - 626942 - gH 100 -14.5 -4.25676 | opp_overlap 626942 626937 AATTAAATCTGAAAA TCTAAGCTTTG TTT CAAAGCTTAGA TTGGCTTTTATTTTT cysS 625758 - 627200 + | cysteinyl-tRNA synthetase BAPKO_0632 627097 - 627240 + | hypothetical protein BAPKO_0633 627204 - 628760 + | hypothetical protein TERM 611 629541 - 629564 + G 73 -9 -2.63073 | gap 1, overlap 629540 629538 629544 CTACAGTTTTCCCTG GAACTCAAGGG GGA CCCTT-AGTTC ATGTTATTGCAGGCA TERM 612 629688 - 629715 + G 85 -7 -4.96773 | overlap 629675 629689 AATCGGAAGGATTTC GGATTGTCAGTG GAGG CACAGACAATCA TTTATTTTTGGTTGA TERM 613 629689 - 629714 + G 88 -10.5 -3.56437 | overlap 629688 ATCGGAAGGATTTCG GATTGTCAGTG GAGG CACAGACAATC ATTTATTTTTGGTTG glyA 628760 - 630013 + | serine hydroxymethyltransferase TERM 614 630209 - 630233 + G 73 -2.9 -5.5112 | CATATTCTAGATCTA GAGAGTTTGAA TTT TATAAACTTTC TTTTTTATTAATGGC TERM 615 630667 - 630654 - g 83 -6.7 -4.82667 | opp_overlap 630654 TGATGAGATTAAAAA GGCTT ATAA AAGCC TTGTTATAAAATATC BAPKO_0635 630040 - 630792 + | DnaJ domain-containing protein TERM 616 630826 - 630844 + T 100 -11 -4.44284 | opp_overlap 630826 TTTAAAGATAAAAAA GAAGGGCT TTT GGCCCTTC TTTTGCTGTTAGCTT TERM 617 630844 - 630826 - T 100 -10.3 -5.56264 | opp_overlap 630826 TTTAAAGATAAAAAA GAAGGGC TTTTG GCCCTTC TTTTGCTGTTAGCTT BAPKO_0636 632712 - 630853 - | membrane-associated protein p66 TERM 618 632643 - 632669 + g 87 -11.6 -2.72991 | overlap 632645 CTTTTTCCTTTAATG CGTCTGCTGCAA ATA TTGCTGCAGATG TGGTTAAAAATATAA TERM 619 632645 - 632667 + g 83 -10.6 -2.90901 | overlap 632643 TTTTCCTTTAATGCG TCTGCTGCAA ATA TTGCTGCAGA TGTGGTTAAAAATAT TERM 620 632898 - 632935 + r 100 -14.6 -4.24294 | opp_overlap 632898 632902 632905, overlap 632902 632929 TACTATTCAAATTTA TAAATAAGATTAGTTG TATTGT CAACTAATCTTATTTA TTTTAAATGATTAAT TERM 621 632935 - 632898 - R 100 -14.6 -2.66748 | opp_overlap 632898 632902 632929, overlap 632902 632905 TACTATTCAAATTTA TAAATAAGATTAGTTG TATTGT CAACTAATCTTATTTA TTTTAAATGATTAAT TERM 622 632931 - 632902 - R 100 -11 -4.02534 | opp_overlap 632898 632902 632929, overlap 632898 632905 ATTCAAATTTATAAA TAAGATTAGTTG TATTGT CAACTAATCTTA TTTATTTTAAATGAT TERM 623 632902 - 632931 + r 100 -11 -4.6951 | opp_overlap 632902 632898 632905, overlap 632898 632929 ATTCAAATTTATAAA TAAGATTAGTTG TATTGT CAACTAATCTTA TTTATTTTAAATGAT TERM 624 632928 - 632905 - R 79 -8.3 -4.12911 | opp_overlap 632902 632898, overlap 632902 632898 CAAATTTATAAATAA GATTAGTTG TATTGT CAACTAATC TTATTTATTTTAAAT lctP 634453 - 632951 - | L-lactate permease TERM 625 633615 - 633645 + g 71 -2.7 -5.40873 | gap 1, opp_overlap 633622, overlap 633619 633624 633632 ATGTAGGGTGAGCAA GCAATAATTCCTTT TGAT AAAGGTATTG-TGC TTTTATTTTTGTGTT TERM 626 635506 - 635526 + G 74 -4 -5.35365 | overlap 635507 635518 TACAGTAGATACAGT TGCTCTTT TTTCT AAAGAGCC TTTTTATTATGTTTT TERM 627 635507 - 635525 + G 73 -7.5 -3.77559 | overlap 635506 635518 ACAGTAGATACAGTT GCTCTTT TTTCT AAAGAGC CTTTTTATTATGTTT dacA 634538 - 635743 + | serine-type D-Ala-D-Ala carboxypeptidase BAPKO_0639 635760 - 636251 + | chemoreceptor glutamine deamidase CheD TERM 628 636534 - 636552 + G 70 -7.6 -3.47751 | overlap 636527 TTCATGCTTTTGGAC TTTTCTTT TTA AAAGAAAA TTATAAATTGTTAGG TERM 629 636611 - 636626 + G 74 -6.2 -4.45544 | opp_overlap 636610 GATAATGATAGAATT TCTCTT CTTA AAGAGA TTTTACTTGATGAGG rep 636254 - 638233 + | rep helicase, single-stranded DNA-dependent ATPase TERM 630 638440 - 638452 + G 70 -6.3 -4.20868 | opp_overlap 638439 TTATTAAGGAGAGAG CCAAA AAA TTTGG TTATTCTTTTAAAGA TERM 631 638652 - 638638 - g 71 -8.6 -2.7814 | opp_overlap 638640, overlap 638637 638640 ATGGATATCTTAAAG GAGTAG GGA CTACTC TTGGAGCTGATAATG TERM 632 638939 - 638923 - g 81 -2.3 -6.09888 | TTGCAACAAAAAAAA CAAAAGT GGA AATTTTG CTCAAAGGACTTAAA pepD 638346 - 639776 + | aminoacyl-histidine dipeptidase TERM 633 640836 - 640821 - g 70 -4.8 -4.78848 | TCTTCAAATAGAAAA TTCAAT TATT ATTGAA GATGAGGAAGGAGTT TERM 634 641577 - 641587 + G 80 -4 -5.63517 | opp_overlap 641577 AAAATTTTATGAAGA TCAA AAT TTGA TTTTTTATTTAAAGG tig 640354 - 641712 + | trigger factor TERM 635 642018 - 642031 + G 76 -4.5 -5.30155 | TGCATTGGGCAAGCT GCTTC AATG GGAGC TTTTTTGCTTGCTGC TERM 636 642195 - 642181 - g 75 -7.2 -4.0749 | TTAAAAAATTAATAA TAGACA TTA TGTCTA ATCAGATAGGGGTTG clpP-1 641718 - 642311 + | ATP-dependent Clp protease proteolytic component TERM 637 642920 - 642908 - gf 87 -4.9 -5.77853 | AATTGCTAAAAAAAA TGAAA ACG TTTCA ATAACAAGAGATGTG clpX 642336 - 643628 + | ATP-dependent protease ATP-binding subunit lon-2 643597 - 646005 + | ATP-dependent protease LA BAPKO_0650 646045 - 646197 + | hypothetical protein TERM 638 646197 - 646226 + GT 70 -5.8 -4.27443 | opp_overlap 646203, overlap 646203 AAAAAAAGGTAAATA AAAAAAGTGGCT TTAATT GGCCACTTTTTG TTGTTTTAATAATAC TERM 639 646203 - 646220 + GT 79 -4.8 -5.4593 | opp_overlap 646203, overlap 646197 AGGTAAATAAAAAAA GTGGCT TTAATT GGCCAC TTTTTGTTGTTTTAA TERM 640 646220 - 646203 - gT 91 -4.1 -5.96894 | opp_overlap 646203 646197 AGGTAAATAAAAAAA GTGGC TTTAATTG GCCAC TTTTTGTTGTTTTAA BAPKO_0651 646142 - 646249 + | hypothetical protein rpsD 646887 - 646261 - | 30S ribosomal protein S4 BAPKO_0654 648425 - 647064 - | hypothetical protein TERM 641 648598 - 648586 - g 79 -3.5 -5.63857 | AAAAATGTAAAAAAA TTATT TTA AATAA TAATAATTTGCACAG BAPKO_0655 648546 - 648914 + | hypothetical protein cdd 649377 - 648937 - | cytidine deaminase BAPKO_0657 649497 - 650459 + | hypothetical protein BAPKO_0658 652032 - 650437 - | hypothetical protein TERM 642 651939 - 651917 - G 72 -6.4 -4.42386 | opp_overlap 651917 TTTTGACTTATAAAA TCAAGAACAA AAT TTGTTATTGA TTGATTTGGATAGCT thiJ 652331 - 652885 + | 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein BAPKO_0661 652882 - 652974 + | hypothetical protein ackA 654128 - 652947 - | acetate kinase TERM 643 653942 - 653962 + g 76 -4.1 -5.50925 | GGATTTTAGAATTGC TGTTTAACA ATA TTTTAAACA TTTTTTCTATTGCTT TERM 644 654185 - 654199 + r 85 -8.6 -4.59853 | overlap 654190 654196 TCCTTTTATGATTGA CAAGCT ATG AGCTTG TTTTTAGCAAGTTAA mfd 657563 - 654189 - | transcription-repair coupling factor TERM 645 654250 - 654278 + g 100 -12.1 -4.7373 | opp_overlap 654256 ATTTTGTCAGATTTT TCAATATTTTTAA AGC TTAAAAATATTGA TTTTTGATACGATGG TERM 646 655796 - 655847 + g 76 -8.4 -3.57798 | gap 1, overlap 655797 TAATTTCTTTTATTG CTGTTATTTG-ATCTGGAGTTTCAT CAT ATGGAAATTCAGATTCAAATAACAA TTGTAATTCGTTATC TERM 647 655797 - 655846 + g 93 -11.9 -2.73956 | gap 1, overlap 655796 AATTTCTTTTATTGC TGTTATTTG-ATCTGGAGTTTCAT CAT ATGGAAATTCAGATTCAAATAACA ATTGTAATTCGTTAT TERM 648 656105 - 656116 + g 76 -4.4 -5.33331 | CAATATAGTCCTTTT CAAG AGAG CTTG TTTTTATTCTCTTTA TERM 649 656228 - 656238 + g 74 -4 -5.22768 | overlap 656217 TTGTTTTTGAAGATT CAAA GGA TTTG TTTATTTTTTGTTCT TERM 650 656860 - 656890 + g 76 -8.5 -3.69354 | TTGTTAATAACTTCA TTCTTCCAAATAA TTTCT TTTTTTGGAAGAA TTTGCAATTCTAAAA TERM 651 657303 - 657284 - G 95 -12.2 -3.05596 | TACTTTTTGAGCCAA TCCCCTTG TATA CAAGGGGA CTAAAATAGTTAAAC TERM 652 657738 - 657755 + G 86 -7.1 -5.17353 | overlap 657731 GAGGATTACAAGGGC CTTGATT TTAA AATCAAG TTTTTTAATCAATCT BAPKO_0664 657660 - 658622 + | hypothetical protein TERM 653 659438 - 659420 - g 87 -2.5 -6.17292 | opp_overlap 659422, overlap 659422 AAATTGAAAAAAAAA CAGATAA TCAGT TTATCTA TCATTCAGTTGCTGT TERM 654 659935 - 659906 - g 88 -10.3 -3.49077 | gap 1, opp_overlap 659907 659911 659911, overlap 659902 CCTATAAAAAGGCAA CTCAACTTTTCAAA AGT TTTGAAAAGTTG-G TAAATTCTAGGTTTA TERM 655 659907 - 659935 + G 100 -12.7 -2.62316 | opp_overlap 659906 659902, overlap 659911 659911 CTATAAAAAGGCAAC TCAACTTTTCAAA AGT TTTGAAAAGTTGG TAAATTCTAGGTTTA TERM 656 659911 - 659931 + G 83 -9.9 -3.23711 | opp_overlap 659906 659902, overlap 659907 659911 AAAAAGGCAACTCAA CTTTTCAAA AGT TTTGAAAAG TTGGTAAATTCTAGG BAPKO_0665 658636 - 660678 + | N-acetylmuramoyl-L-alanine amidase, putative BAPKO_0667 661317 - 660772 - | small primase-like protein BAPKO_0668 661336 - 661286 - | hypothetical protein pepX 662591 - 661320 - | putative aminopeptidase 2 BAPKO_0670 662676 - 663401 + | hypothetical protein TERM 657 663400 - 663449 + T 100 -8.9 -5.055 | opp_overlap 663408, overlap 663403 663408 TTAGATTAGTTTATT GACAGAAATTCAAGAATATAAAC TTAA GTTTATATTCTTGAATTATATTC TTTTTTAAAAATTCC TERM 658 663403 - 663446 + T 93 -9.2 -4.62085 | opp_overlap 663408, overlap 663400 663408 GATTAGTTTATTGAC AGAAATTCAAGAATATAAAC TTAA GTTTATATTCTTGAATTATA TTCTTTTTTAAAAAT TERM 659 663441 - 663408 - T 100 -15.7 -4.0641 | opp_overlap 663408 663403 663400 GTTTATTGACAGAAA TTCAAGAATATAAAC TTAA GTTTATATTCTTGAA TTATATTCTTTTTTA TERM 660 663408 - 663441 + T 100 -15.7 -4.05069 | opp_overlap 663408, overlap 663403 663400 GTTTATTGACAGAAA TTCAAGAATATAAAC TTAA GTTTATATTCTTGAA TTATATTCTTTTTTA fruA-2 665294 - 663429 - | PTS system, fructose-specific IIABC component fruK 665384 - 666307 + | 1-phosphofructokinase TERM 661 666348 - 666316 - T 83 -9.3 -3.57462 | opp_overlap 666316 666318, overlap 666317 TATTTGATTTTTAAA CTTTACTGTAGCTTT TTA AAAGCTACAGTAATT AGTTTGCTTAAATTT TERM 662 666316 - 666350 + T 75 -7.5 -3.99779 | gap 2, opp_overlap 666316 666317, overlap 666318 TATTTGATTTTTAAA CT--TTACTGTAGCTTT TTA AAAGCTACAGTAATTAG TTTGCTTAAATTTTC TERM 663 666347 - 666317 - T 90 -12.8 -2.74263 | opp_overlap 666316 666318, overlap 666316 ATTTGATTTTTAAAC TTTACTGTAGCTTT TTA AAAGCTACAGTAAT TAGTTTGCTTAAATT TERM 664 666318 - 666346 + T 100 -16.3 -3.6187 | opp_overlap 666317 666316, overlap 666316 TTTGATTTTTAAACT TTACTGTAGCTTT TTA AAAGCTACAGTAA TTAGTTTGCTTAAAT BAPKO_0673 666673 - 666356 - | hypothetical protein recD 668769 - 666937 - | exodeoxyribonuclease V, alpha chain TERM 665 666988 - 666999 + g 70 -3 -5.29385 | overlap 666994 TAGTATTTTTGAATC TCTT TCGC AAGA TTTTTTGCTTAGCTT TERM 666 667192 - 667205 + g 82 -2.5 -5.9667 | TTCATAATTTGTTAG TAAAT CTAG ATTTA TTTTTTTATATTTTT recB 672278 - 668766 - | exodeoxyribonuclease V, beta chain TERM 667 669841 - 669827 - G 71 -4.2 -5.06414 | opp_overlap 669827 TTTTTGTAATAAAAA GAGCAA ATT TAGCTC TTGTTGCCCCCACAT TERM 668 669958 - 669969 + g 85 -3 -6.06723 | opp_overlap 669958 669967, overlap 669945 CCGTTTTGATAAAAT TTGT AAAA ACAA TTTTTTTTTGAAAAA recC 675523 - 672284 - | exodeoxyribonuclease V, gamma chain TERM 669 672486 - 672512 + g 83 -6.8 -4.91852 | opp_overlap 672483 672492, overlap 672483 ATTTTTATGAAATTC TCAAAACAATTT GAA AAATTATTTTGA TTTATTTTTGATAAA TERM 670 672695 - 672709 + g 81 -2.9 -5.84381 | TTCTGTTAATGAATT GAAAT TTTGT ATTTC TTTTTTTATTAGTAG TERM 671 673455 - 673469 + g 77 -2.9 -5.5943 | overlap 673462 673464 TTTTCATTTGGATGC TTTTC TATTT GAAAA TTTTTTTCATACTTT TERM 672 674010 - 674026 + g 83 -6.7 -4.87389 | ATTATTTCTGCCCAT TCATATA CTT TATATGA TTTATTTTTAAAATA TERM 673 674408 - 674424 + g 84 -9.5 -3.66589 | opp_overlap 674403 TATAAAAAGATCCAT TAGCCTT TTT AAGGCTA TTATACTTTCTCCTT TERM 674 674873 - 674889 + g 74 -2.3 -5.65177 | opp_overlap 674883 AAAATCAAAAATTTT TTCTAAA GAA TTAAGAA TTTTTTTCTCAATCT BAPKO_0678 676972 - 675527 - | nicotinate phosphoribosyltransferase TERM 675 675822 - 675873 + g 73 -7.8 -3.76815 | opp_overlap 675820 675825 675864 675869 TTTCTTGAATTTAGA TGATCTTTTATTTTATCTTTTT CTTCTTTT AAAAATATAAAATCAAAGATCA TTTGACCTTTTAAAT TERM 676 676135 - 676159 + g 80 -6.5 -4.96523 | overlap 676138 CAATAATTTTTACGT GACTTAAGCCA TTT TGGTTTAATTC TTTTCTTATTGCTTT TERM 677 676138 - 676156 + g 76 -6.8 -4.54297 | overlap 676135 TAATTTTTACGTGAC TTAAGCCA TTT TGGTTTAA TTCTTTTCTTATTGC TERM 678 676201 - 676220 + g 74 -2.2 -5.6473 | overlap 676212 CAAGATCTCCGCTGT CAATTCTT ATTG AAAAATTG TTTTTTTCCTCTTGT TERM 679 677324 - 677341 + G 75 -5.7 -4.69487 | overlap 677322 ACCGATTCTTTGATT GAAATTT TTTT AAATTTC TTTATTTATGTATTT TERM 680 677438 - 677413 - g 75 -5.5 -4.9725 | opp_overlap 677413 677412 ATTTTTAGATAAAAA TCGAGAGACAA TATA TTATCTTTCGA CTTCTCCTACATTTT TERM 681 678343 - 678360 + G 82 -6.3 -5.02074 | TGATGAGGCTTATGA GCGTTTA TTGT TAGACGC TTTTTTAGGGGATGG zwf 677105 - 678541 + | glucose-6-phosphate 1-dehydrogenase TERM 682 678674 - 678694 + TF 82 -4.2 -5.63236 | opp_overlap 678674, overlap 678684 CTTACAACTTAGTAA TAAAATTT TTGAT AAATTTTA TTTTTCTTTTTAAAT TERM 683 679282 - 679313 + GT 93 -11.2 -3.17714 | opp_overlap 679296, overlap 679257 679271 TGTTGCAATTGCTCC TATTGCTTTTAATA TTGC TGTTAAAAGCAATA TTAATCCAAATTTAA BAPKO_0681 680219 - 680133 - | hypothetical protein nhaC-1 678842 - 680185 + | Na+/H+ antiporter TERM 684 680203 - 680183 - Gf 71 -2.7 -5.41143 | opp_overlap 680162 TATTTTCTAAAAAAA TAAAAATTT TGA AAATTTTAA GATTTGCATTGTTCA TERM 685 680319 - 680331 + G 100 -6.2 -6.23317 | TAGTTCCAAATTTTT GGGG ACTTA CCCC TTTTTTTCTTTTTAT TERM 686 680416 - 680397 - g 93 -10.8 -3.87869 | TTAATGGTGTAGAAA GGGCATTT TATC AAATGCCC CCCATATTTGCTATG TERM 687 680637 - 680651 + G 74 -2.1 -5.65513 | ATGTTCCATTGAATT TGCTA GTATG TGGCA TTTTTTTGATTACTC nhaC-2 680285 - 681640 + | Na+/H+ antiporter TERM 688 681632 - 681670 + T 100 -14.2 -5.31519 | opp_overlap 681635, overlap 681635 TTAAATAATAGCCAA AAATCTTAAAAGCTTCTA AAA TGGAAGCTTTTAAGATTG TTTTTGTTTAAGTAT TERM 689 681635 - 681667 + T 100 -15.9 -4.72696 | opp_overlap 681635, overlap 681632 AATAATAGCCAAAAA TCTTAAAAGCTTCTA AAA TGGAAGCTTTTAAGA TTGTTTTTGTTTAAG TERM 690 681667 - 681635 - T 100 -13.7 -4.77216 | opp_overlap 681635 681632 AATAATAGCCAAAAA TCTTAAAAGCTTCTA AAA TGGAAGCTTTTAAGA TTGTTTTTGTTTAAG potD 682732 - 681686 - | spermidine/putrescine ABC transporter, binding periplasmic protein TERM 691 681728 - 681741 + g 82 -5.3 -5.4477 | GAGTATTTCTTCTTT TACCT TTTT AGGTA TTTTTTTAAAAATTT potC 683543 - 682752 - | spermidine/putrescine ABC transporter, permease protein potB 684356 - 683547 - | spermidine/putrescine ABC transporter, permease protein TERM 692 683615 - 683597 - G 71 -4 -5.01811 | opp_overlap 683590, overlap 683590 TTATTAAATTAAAAA TTAATATT ACT AACATTAA AATAAATGAAATTGC potA 685399 - 684356 - | spermidine/putrescine ABC transporter, ATP- binding protein TERM 693 685205 - 685189 - G 76 -8.1 -3.86015 | opp_overlap 685189, overlap 685201 GATTGGTTTTAGAAA TTTCCTT AGA AAGGAAA TAAATTTCCCCATTT TERM 694 685491 - 685509 + r 77 -7.6 -4.12942 | opp_overlap 685491 685494, overlap 685494 TTTTAAAAGACATTA TAATTCTT GTC AAGAATTA TTTTCCCAAATTTAC rbgA 686284 - 685478 - | ribosomal biogenesis GTPase TERM 695 685955 - 685965 + g 74 -2.6 -5.73978 | opp_overlap 685955 TGGGACCCCAATAAT TAAA ACT TTTA TTTTTTCTTTATAAT TERM 696 686393 - 686411 + H 74 -4.7 -5.09685 | TTTATGTTAATTATG TTCTTTT TCATT AAAAGAA TTGTTTTTTTTTAAA BAPKO_0688 686488 - 687186 + | N-acetylmannosamine-6-phosphate 2-epimerase TERM 697 687709 - 687723 + G 100 -10 -5.42259 | opp_overlap 687699 AACAAGGTAGATTTA CCCAAG GTC CTTGGG TTTTTTTCGGGATCC ptsG 687235 - 688779 + | PTS system, glucose-specific IIBC component TERM 698 688788 - 688814 + T 100 -13.2 -4.42743 | opp_overlap 688791 TGATTAATTTTTTAA TAAGCAATAGCT TAA GGCTATTGCTTA TTTGTCTTGTTTATA TERM 699 688811 - 688791 - T 89 -9.8 -3.63569 | opp_overlap 688788 TTAATTTTTTAATAA GCAATAGC TTAAG GCTATTGC TTATTTGTCTTGTTT BAPKO_0690 689788 - 688805 - | hypothetical protein TERM 700 688945 - 688958 + g 74 -3.9 -5.31456 | TAGGAATATCTTTTT TTATG CCCC CATAA TTTTTTATGAATTCG fur 690312 - 689785 - | ferric uptake regulation protein BAPKO_0692 692100 - 690412 - | serine/threonine kinase, putative TERM 701 690443 - 690461 + g 77 -6.2 -4.75174 | opp_overlap 690451, overlap 690428 TTTTTTATATTAGTA TAAAAAAT TAA ATTTTTTA TTTTTGAATTCAGTC TERM 702 690984 - 690974 - G 71 -4 -5.14563 | opp_overlap 690974 TCGTCTATGAAAAAA TCAA TTG TTGA TTTTGTAGTGGAGTT TERM 703 692783 - 692772 - g 73 -4.4 -5.08169 | ATATAGGTGAAAAAA TTGC TGAG GCAA TGGATAAAGTTGGAA groEL 692291 - 693928 + | chaperonin GroEL BAPKO_0694 693995 - 694291 + | hypothetical protein BAPKO_0695 694304 - 694618 + | hypothetical protein TERM 704 694825 - 694855 + G 71 -7.8 -3.68222 | opp_overlap 694827 CAAGAGGCTTTAAGG GATTATTCAAAG GAAAAAG CTTTGAATGATC TTGTTAAGCTTAAGG secD 694684 - 696444 + | preprotein translocase subunit SecD secF 696428 - 697327 + | preprotein translocase subunit SecF TERM 705 697780 - 697770 - g 91 -6.8 -5.4477 | opp_overlap 697769 697770 AAATTTTGAAAAAAA GAGC AAA GCTC CATTTTCTTGTATAA BAPKO_0698 697354 - 698496 + | hypothetical protein dnaJ-2 699323 - 698493 - | heat shock protein TERM 706 699349 - 699379 + H 100 -11.6 -4.6575 | opp_overlap 699374, overlap 699374 CCTTCAAATTTCTTT TATTTATTATATTT TTT AAATATAATAAATA TTTTATACTTTATAT TERM 707 699577 - 699595 + G 71 -2.5 -5.42975 | overlap 699579 CAATTATAAAAACAC TTTACAT TAAGC ATGTAGA TTTTTGTTTATGTAG TERM 708 699759 - 699772 + G 80 -5.3 -5.29846 | opp_overlap 699759 ATTACTCGAATTAAT CTTTG TGTT CAAAG TTTTTCTTTAAAATT TERM 709 699946 - 699967 + G 70 -5.9 -4.43571 | overlap 699950 TACAAGAATTGCTTT CATATATGC CCGA GCATATTTG TTTTAGTGATTTTAT TERM 710 699950 - 699963 + G 73 -5.3 -4.74518 | overlap 699946 AGAATTGCTTTCATA TATGC CCGA GCATA TTTGTTTTAGTGATT BAPKO_0700 699432 - 700565 + | HemN-related protein rpi 701238 - 700552 - | ribose 5-phosphate isomerase TERM 711 700659 - 700669 + g 74 -6.8 -4.43501 | TAAAGTATTTTTCTG TCCC TTC GGGA TTTTCTACGTGCATT TERM 712 701209 - 701222 + g 76 -3.9 -5.46698 | overlap 701218 GCGATCAATTGCATA TTTTG CTAC CAAAA TTTTTTGATTTTCCA gpmA 701383 - 702129 + | phosphoglycerate mutase TERM 713 702157 - 702178 + T 100 -8.9 -6.04419 | opp_overlap 702160 AGTATAAATTGTTAA TAAGTCATA ATTA TATGACTTA TTTTTTTATTATTTT lysK 703764 - 702199 - | lysyl-tRNA synthetase TERM 714 702319 - 702303 - G 70 -6.7 -3.97406 | TTAAAATTTTATAAA TTTGTTT AAA AAACAAA GCGGGCTCTATATTA TERM 715 703025 - 703042 + g 82 -9.1 -3.7331 | overlap 703024 GATGTATCAAAACTG CCGCCAC TGCT GTGGTGG TCTTTTCCTGCAGGT TERM 716 703248 - 703258 + g 73 -5.4 -4.6635 | TACAAAATATACTGA TTGG ATA CCAA TTTTCTTCAAGCTTT TERM 717 703263 - 703277 + g 71 -7.2 -3.74516 | TTGGATACCAATTTT CTTCAA GCT TTGAAG TTCTATATTCGTTTA era 704709 - 703837 - | GTP-binding protein Era BAPKO_0705 704816 - 705172 + | hypothetical protein BAPKO_0706 705182 - 705592 + | hypothetical protein TERM 718 705803 - 705826 + G 74 -6.2 -4.56791 | TGGAAATGGAATGCT TTTTGTTTTT AAAA AAGAACAAAA TTTATCTTTTTGGAT TERM 719 705968 - 705986 + G 90 -9.6 -4.51196 | AGTAAAGTATGCTCT TGAGCTTC CAA GAGGCTCA TTTTCTAAATTTCAA BAPKO_0707 705612 - 706061 + | hypothetical protein BAPKO_0708 706759 - 706070 - | hypothetical protein BAPKO_0709 706802 - 707761 + | hypothetical protein TERM 720 708621 - 708605 - g 70 -2.2 -5.4505 | opp_overlap 708605 708607, overlap 708607 GTTTGTAATAAAAAA TAGCAG TATGC CTGCTG TATTGATTGAAATGG BAPKO_0710 707745 - 708752 + | hypothetical protein TERM 721 708897 - 708913 + G 81 -2.3 -5.95286 | overlap 708898 TTTAAATTATGACAA TCTTTTT TCA AGAAAGG TTTTTTATTTTTACT BAPKO_0711 708742 - 709293 + | hypothetical protein TERM 722 710394 - 710375 - g 72 -7.2 -3.95073 | overlap 710376 GTTGAGAGTGATAAA CCTGAAGA ATCA TCTTCAGA AAATTAGGTTTAAAT flaA 709376 - 710401 + | flagellar filament outer layer protein TERM 723 710393 - 710376 - f 71 -8.5 -2.96722 | overlap 710375 TTGAGAGTGATAAAC CTGAAGA ATCA TCTTCAG AAAATTAGGTTTAAA TERM 724 710410 - 710451 + F 90 -11.9 -3.10583 | gap 1, opp_overlap 710409 710413, overlap 710407 710411 710413 710439 710441 AAATTAGGTTTAAAT TA-ATATGTGAAGCTAGCCT AAA GGGTTAGCTTCACATATATG TGATGTTTTTTAATA TERM 725 710411 - 710449 + F 100 -14.8 -3.09112 | opp_overlap 710409 710413, overlap 710410 710407 710413 710439 710441 AATTAGGTTTAAATT AATATGTGAAGCTAGCCT AAA GGGTTAGCTTCACATATA TGTGATGTTTTTTAA TERM 726 710447 - 710413 - f 100 -14.5 -3.52204 | opp_overlap 710411 710410 710407 710413 710439 710441, overlap 710409 TTAGGTTTAAATTAA TATGTGAAGCTAGCC TAAAG GGTTAGCTTCACATA TATGTGATGTTTTTT TERM 727 710413 - 710447 + F 100 -17.4 -3.08318 | opp_overlap 710413 710409, overlap 710411 710410 710407 710439 710441 TTAGGTTTAAATTAA TATGTGAAGCTAGCCT AAA GGGTTAGCTTCACATA TATGTGATGTTTTTT TERM 728 710439 - 710456 + F 70 -4.1 -5.14563 | opp_overlap 710413 710409, overlap 710413 710411 710410 710407 710441 AGCCTAAAGGGTTAG CTTCACA TATA TGTGATG TTTTTTAATAGGAAA TERM 729 710799 - 710812 + G 70 -5.3 -4.47183 | AATGCTTGCGCTTCG TCTTG ATGG CAAGA TTTATTTGAATGATA TERM 730 711857 - 711870 + G 75 -5.3 -4.95957 | opp_overlap 711857 ATGATTATCAAGAAA GTTTC CAGA GAAAC TTTTTAATTGATTTG TERM 731 711991 - 712004 + G 71 -3.9 -5.06103 | CTTAATGATATATCC GAATT GAGA AATTC TTTTTTCAGACTTCT cheA-2 710476 - 713070 + | chemotaxis histidine kinase cheW-3 713078 - 714478 + | purine-binding chemotaxis protein cheX 714490 - 714975 + | chemotaxis operon protein cheY-3 715015 - 715455 + | chemotaxis response regulator TERM 732 715482 - 715492 + T 70 -2.6 -5.4593 | AAACAGCTCAAGCTT TAAT TTT ATTA TTTTTATTCTTTTAG BAPKO_0717 716010 - 715504 - | hypothetical protein BAPKO_0718 717053 - 716007 - | hypothetical protein BAPKO_0719 717910 - 717047 - | hypothetical protein gph 718569 - 717907 - | phosphoglycolate phosphatase TERM 733 717941 - 717961 + g 72 -3.3 -5.19998 | AGCTCAAGTGGATTA TGGAGTA TGTATTT TGCTCCA TTTTGTTTTAATTCT TERM 734 718330 - 718350 + g 77 -6.3 -4.79683 | overlap 718331 GTTTTTATTGTATTC TTTTACAAA TTC TTTGTAAAG TTTGTTTTGTAAATT TERM 735 718331 - 718349 + g 70 -7.6 -3.46183 | overlap 718330 TTTTTATTGTATTCT TTTACAAA TTC TTTGTAAA GTTTGTTTTGTAAAT TERM 736 719959 - 719945 - g 84 -3.6 -5.83822 | GAGATTTAAAAAAAA TCATTC AAA GAATAA TTTTGATTTAAAATT mglA-2 718812 - 720422 + | ribose/galactose ABC transporter, ATP-binding protein rbsC-1 720423 - 721574 + | ribose/galactose ABC transporter, permease protein rbsC-2 721546 - 722472 + | ribose/galactose ABC transporter, permease protein TERM 737 723702 - 723712 + G 74 -6.8 -4.43307 | GTATGTCTTATATTC TGCC TTA GGCA TTATTTTATTAAGCA TERM 738 723914 - 723901 - g 71 -2.4 -5.46698 | GTGAAAATGAAAAAA GCTA TTTCTG TAGC AATTGCAAGTGTTTT mcp-4 722629 - 724890 + | methyl-accepting chemotaxis protein TERM 739 725192 - 725209 + G 72 -7.1 -3.95324 | AAAGGTTGGGTTTTA TTTCAGA TCAA TCTGAAA TTCTTGTTCAAAGTG mcp-5 724921 - 726822 + | methyl-accepting chemotaxis protein TERM 740 726846 - 726823 - T 95 -11.2 -3.74303 | opp_overlap 726822 726819, overlap 726819 AAAATCGAAAAGTAA GTAGAAGATT TTTA AATCTTCTAC AACTTTTTGGCGGAT trmU 727931 - 726864 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 741 726942 - 726953 + g 77 -3 -5.63517 | overlap 726936 AAATTGTCCTGGAGA GATT CCAT AATC TTTTTTATTTAAAGA TERM 742 728112 - 728123 + G 78 -4.4 -5.40072 | AAAATCCTTTATATT CTTC CAAT GAAG TTTTTTTAAAAAAAA TERM 743 728585 - 728569 - g 75 -3.7 -5.40072 | opp_overlap 728569 TCTGGTTGAAAAAAA TCCAAAG CTA CTTTCGA TCAATTTATCTGAAT BAPKO_0727 728027 - 729250 + | 3-hydroxy-3-methylglutaryl-CoA synthase BAPKO_0728 729234 - 730298 + | isopentenyl pyrophosphate isomerase TERM 744 730505 - 730525 + G 86 -10.5 -3.22656 | overlap 730508 ATTCTTTACCTATTG CGACAGAAG AAT CTTCTGTTG TTGCTGCCTTAAATT TERM 745 730508 - 730522 + G 78 -8.6 -3.75105 | overlap 730505 CTTTACCTATTGCGA CAGAAG AAT CTTCTG TTGTTGCTGCCTTAA TERM 746 731432 - 731408 - g 100 -9.5 -4.65916 | opp_overlap 731408 731403 731410 TGCATGTTAATAAAA TATTCTGTCTT TTA AAGACAAAATA TAATATTTCTGATTT mvaA 730288 - 731556 + | 3-hydroxy-3-methylglutaryl-CoA reductase TERM 747 732155 - 732171 + G 81 -2.3 -6.06723 | overlap 732157 TCTAGTAAAAAGATT TTTAAAG ATG CTTTATA TTTTTTTTTAAAAAA TERM 748 732157 - 732169 + G 70 -4.9 -4.69028 | overlap 732155 TAGTAAAAAGATTTT TAAAG ATG CTTTA TATTTTTTTTTAAAA BAPKO_0730 731540 - 732478 + | mevalonate pyrophosphate decarboxylase BAPKO_0731 732469 - 733422 + | phosphomevalonate kinase, putative TERM 749 733489 - 733506 + G 70 -6.3 -4.07868 | overlap 733498 ATGGATTTCCAGTTA TTGGAGC TACA GTTCCAA TTTATATGGATCTGG BAPKO_0732 733416 - 734309 + | mevalonate kinase, putative BAPKO_0734 734899 - 734432 - | hypothetical protein TERM 750 735297 - 735311 + G 76 -8.6 -3.58037 | CTAATTTTTCACTTT CAATGC AAA GCATTG TTTCCAGCCTTGCTG napA-2 734984 - 735514 + | neutrophil activating protein fus-2 735591 - 737600 + | elongation factor G TERM 751 737946 - 737928 - g 70 -3.2 -5.29716 | opp_overlap 737919, overlap 737919 GCAATAGAAGAAAAA TTCTTC TTGGTTT GAAGAA TATGCAATATTCAAG xylR-1 737879 - 739087 + | xylose operon regulatory protein TERM 752 739073 - 739094 + F 73 -2.3 -5.80248 | TTTTATTTGACAGGA GGAGATATT GATT AATATTGCC TTTTTTTGTATCTTA TERM 753 740414 - 740403 - g 70 -3 -5.27923 | opp_overlap 740409 TAAGCTCATAAAAAA GTTT AGTC AAAC AACTTTGATTATGAA ffh 739150 - 740484 + | signal recognition particle protein rpsP 740497 - 740757 + | 30S ribosomal protein S16 BAPKO_0740 740758 - 741006 + | hypothetical protein TERM 754 741047 - 741083 + G 73 -4.6 -5.10601 | opp_overlap 741051, overlap 741051 TATCGTCTTATGGAG TTAATGGGTATGCT AGGATTAAA AGCATATCCAATAA TTTTTGTGATTTTAT TERM 755 741146 - 741134 - g 75 -3.4 -5.40072 | overlap 741135 TTCTTTTGAAAAAAA GCAA TGGTT TTGC CATTGAAGTTAAAGT BAPKO_0741 741010 - 741510 + | hypothetical protein TERM 756 741691 - 741707 + G 70 -2.9 -5.27779 | overlap 741693 GTGCTGGGATGGTAT TAAAGGC TGA GCCTATG TTTTTTGCTCTTGAG trmD 741507 - 742226 + | tRNA (guanine-N(1)-)-methyltransferase TERM 757 742233 - 742223 - g 74 -4 -5.19328 | ATTTGATAAGAAAAA TTGA AGC TCAA AATAAGAAAAATGAG rplS 742204 - 742563 + | 50S ribosomal protein L19 BAPKO_0744 742944 - 743483 + | hypothetical protein kdtB 743485 - 743976 + | lipopolysaccharide biosynthesis-related protein rpmF 744039 - 744221 + | 50S ribosomal protein L32 BAPKO_0747 744245 - 744487 + | acyl carrier protein rnc 744487 - 745224 + | ribonuclease III papS 746427 - 745195 - | polynucleotide adenylyltransferase TERM 758 746245 - 746260 + g 70 -4.8 -4.67968 | TATTCCTGTTTTAAT GTTATT TGGA AATAAC TTTATTATTTCTTCG BAPKO_0750 746545 - 748317 + | hypothetical protein BAPKO_0751 748323 - 748646 + | hypothetical protein TERM 759 748777 - 748761 - f 72 -8.7 -2.62396 | CAGCTGGCCAGAGCA GCGGTCT TGT AAACCGC AGGTCGTCGGTTCGA TERM 760 749063 - 749026 - f 100 -11.1 -4.02581 | gap 1, opp_overlap 749024 749039, overlap 749021 749027 GGTTATAAAATATAA TGTTAGTTATCAATTAAA AGT TTTAATTGATAACTAA-A GAGTAATTAGCAAAT TERM 761 749063 - 749027 - f 93 -12.7 -3.00825 | opp_overlap 749024 749039, overlap 749026 749021 GTTATAAAATATAAT GTTAGTTATCAATTAAA AGT TTTAATTGATAACTAAA GAGTAATTAGCAAAT BAPKO_0754 749104 - 750135 + | hypothetical protein TERM 762 750243 - 750253 + G 81 -8.2 -4.30576 | opp_overlap 750243 GGGTCTACTTATAAA GGGC TTT GCCC TTTTCATGCTGAGAA TERM 763 750253 - 750243 - g 78 -8.2 -3.91897 | opp_overlap 750243 GGGTCTACTTATAAA GGGC TTT GCCC TTTTCATGCTGAGAA TERM 764 750288 - 750304 + G 75 -3.7 -5.4593 | opp_overlap 750290, overlap 750290 CCCTCTTTTTTTGTA AATCCTT TGC AAGGATA TTTTTATTGTTTTGG TERM 765 750290 - 750302 + G 72 -6.3 -4.32946 | opp_overlap 750290, overlap 750288 CTCTTTTTTTGTAAA TCCTT TGC AAGGA TATTTTTATTGTTTT TERM 766 750725 - 750700 - g 95 -7.7 -5.54264 | overlap 750690 750702 AAATATTGAAAAAAA GTGGTTTATTT TCAA AAATAAACCCC AAAGCTTCTATTTTA TERM 767 750723 - 750702 - g 74 -8.9 -2.92444 | overlap 750690 750700 ATATTGAAAAAAAGT GGTTTATTT TCAA AAATAAACC CCAAAGCTTCTATTT TERM 768 750993 - 750979 - g 70 -6.4 -4.2558 | opp_overlap 750979 CATCTGGGATTAAAA GAGCAG TAT CTACTC TTGGTACTTCTTTTT dnaG 750141 - 751922 + | DNA primase TERM 769 752953 - 752937 - g 73 -4.5 -5.08178 | overlap 752925 ATAGAGATAGAAAAA TCTCTTA AAC TAAAAGA AGATGCTATTAAAGA TERM 770 753501 - 753469 - g 100 -13.7 -4.7416 | TTAAAACTGTAAAAA GTGTTTCAAGAGA GCCTGTT TCTCTTGAAACAC CAATTGGGGAAGAGG TERM 771 753598 - 753563 - g 75 -3.4 -5.5074 | gap 1 TAAGGCAATAAAAAA TCCTGCAAATC-ACACA TCC TTTGTAGTTTTGCAAGA TCAAATAAGAGCAAT rpoD 751926 - 753821 + | RNA polymerase sigma factor RpoD TERM 772 753955 - 753945 - g 80 -4 -5.60864 | TAGAGATGAAAAAAA TTCA GAT TGAA GAATTATCTAAAGTT BAPKO_0757 753818 - 754594 + | hypothetical protein BAPKO_0758 754999 - 755967 + | hypothetical protein TERM 773 756581 - 756565 - gf 72 -8.1 -3.16079 | opp_overlap 756565 756564 756563 756567, overlap 756563 GAGCATAATAAAGTA TATGAGA AAT TCTCATA ATATTATAATTGGTC mreB-1 755942 - 757027 + | rod shape-determining protein mreC 757031 - 757876 + | rod shape-determining protein BAPKO_0761 757876 - 758358 + | hypothetical protein TERM 774 759828 - 759815 - g 71 -3.9 -5.06961 | ATTAAGAAAAACAAA TCTTA TTAG TAAGA ACACATTTAAGCTTC pbp-2 758358 - 760157 + | penicillin-binding protein mreB-2 760162 - 761478 + | rod shape-determining protein TERM 775 761517 - 761527 + F 76 -2.6 -5.82281 | TTTCTTATCTCTATT TTTT TAG AAAA TTTTTTTGTATATTT thrZ 761645 - 763390 + | threonyl-tRNA synthetase TERM 776 763895 - 763913 + G 89 -6.2 -5.52807 | overlap 763910 TTTTATTAGCTGTAT TTTAAATT TTG AATTTAAA TTTTTATTTATTGTT BAPKO_0765 763395 - 764024 + | CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase TERM 777 764519 - 764504 - g 74 -6.2 -4.44915 | opp_overlap 764504 TAAGGATTTATAAAA GCAATA TTTA TATTGC TTATCAGTTAGAAAA TERM 778 765417 - 765432 + G 79 -4.8 -5.41359 | CTCTACTTTAAGCTC TAATTC CAAT GAATTA TTTTTTACTTTGGTT BAPKO_0766 764011 - 765456 + | hypothetical protein BAPKO_0767 765963 - 765430 - | adenylyl cyclase, CyaB-type, putative ntpJ 766063 - 767382 + | K+ transport protein BAPKO_0769 767386 - 768168 + | hypothetical protein ylxH-3 768178 - 769149 + | minD-related ATP-binding protein TERM 779 769258 - 769245 - g 70 -5.3 -4.46267 | opp_overlap 769245 AGAATGCAAGCAAAA CAATC CTTT GATTG ATTTTTATGCTAGCG pfk 769180 - 770523 + | diphosphate--fructose-6-phosphate 1-phosphotransferase nox 771869 - 770538 - | coenzyme A disulfide reductase gltP 773275 - 771884 - | glutamate transporter TERM 780 773207 - 773167 - G 84 -9.4 -3.55191 | opp_overlap 773167 773168, overlap 773165 773168 CTAACGCTATAAACA CTCTTTTTGTAAAAGAAA TATTT TTTCTTTTACAAAAATAA ACTATGCTTATTAGA TERM 781 773206 - 773168 - G 84 -10.7 -2.72632 | opp_overlap 773167 773168, overlap 773167 773165 TAACGCTATAAACAC TCTTTTTGTAAAAGAAA TATTT TTTCTTTTACAAAAATA AACTATGCTTATTAG TERM 782 773232 - 773209 - G 100 -11.2 -4.96501 | opp_overlap 773209 TTTTACAAAAATAAA CTATGCTTAT TAGA ATAAGCATAG TTGTAATATTGATCA TERM 783 773209 - 773232 + g 93 -11.2 -3.53531 | opp_overlap 773209 TTTTACAAAAATAAA CTATGCTTAT TAGA ATAAGCATAG TTGTAATATTGATCA pgi 774932 - 773340 - | glucose-6-phosphate isomerase BAPKO_0775 775356 - 774955 - | hypothetical protein pbp-3 778134 - 775363 - | penicillin-binding protein TERM 784 775938 - 775950 + g 74 -4.9 -5.10497 | overlap 775944 TAATTATTCCTGCAG GTTTT TCA AAAAC TTTTTTAGGTAAGTT TERM 785 777603 - 777559 - G 73 -4.3 -5.00616 | opp_overlap 777570, overlap 777562 GCTTTTGCCAAAAAA GAATTTTGATGCGGCAACTAT TCC ATAGTTGCCGTTTCCAAAATA AACTTTATTAAGGTA TERM 786 777600 - 777562 - G 93 -10.4 -4.61482 | opp_overlap 777570, overlap 777559 TTTGCCAAAAAAGAA TTTTGATGCGGCAACTAT TCC ATAGTTGCCGTTTCCAAA ATAAACTTTATTAAG TERM 787 777570 - 777592 + g 100 -15 -3.55563 | opp_overlap 777562 777559 AAAAGAATTTTGATG CGGCAACTAT TCC ATAGTTGCCG TTTCCAAAATAAACT TERM 788 778079 - 778103 + g 82 -5.2 -5.47399 | opp_overlap 778083 GTGAAATATGTTAAA TAAATAAGTA ACTTA TGCTTATTTA TTTTTTTCAAATTAA TERM 789 778198 - 778225 + H 88 -11.6 -2.88427 | overlap 778187 778186 AAGTTGATTGTTATA GTGTAAAATTAT TGTT ATAATTTTACAC TATGTAAGCAGTATT BAPKO_0777 778429 - 779214 + | hypothetical protein BAPKO_0778 780424 - 779420 - | hypothetical protein TERM 790 779572 - 779588 + g 100 -5.3 -5.93809 | opp_overlap 779571 779574, overlap 779559 779571 CATATTCTTCAAGAG TATTAAA TAC TTTAATA TTTTTTTTATCCCAC TERM 791 781002 - 780991 - g 73 -3 -5.43329 | AAAAAGAAAAGAAAA CTAA TCAA TTAG AGGATAATTTTTCTG rlpA 780504 - 781316 + | rare lipoprotein A BAPKO_0780 781512 - 782516 + | histidine phosphokinase/phophatase, putative TERM 792 782738 - 782725 - g 82 -5.3 -5.43514 | opp_overlap 782725 AAAAGAATGAAAAAA CACAA TACT TTGTG GCTTTTTGGAACAGA TERM 793 784005 - 784025 + G 72 -6.9 -4.15543 | GGTAATGGCGGGATT GGAATTTAC AGG GCAAATTCC TTTTAAAGATGTTTA TERM 794 784694 - 784664 - g 81 -10 -2.96712 | opp_overlap 784651 784663 784665 784670, overlap 784663 784670 ATTTTCAAGAAGAAT TTGAAAGTTTTAAA GTA TTTAAAACTTTCAT TGTGGCCGTTAGAAC TERM 795 784665 - 784693 + G 100 -13.5 -3.33261 | opp_overlap 784664 784663 784670, overlap 784651 784663 784670 TTTTCAAGAAGAATT TGAAAGTTTTAAA GTA TTTAAAACTTTCA TTGTGGCCGTTAGAA TERM 796 784688 - 784670 - g 73 -7.6 -3.73725 | opp_overlap 784663 784665 784670, overlap 784664 784663 AAGAAGAATTTGAAA GTTTTAAA GTA TTTAAAAC TTTCATTGTGGCCGT TERM 797 784670 - 784688 + G 75 -7.6 -3.99678 | opp_overlap 784670 784664 784663, overlap 784663 784665 AAGAAGAATTTGAAA GTTTTAAA GTA TTTAAAAC TTTCATTGTGGCCGT valS 782506 - 785133 + | valyl-tRNA synthetase TERM 798 785186 - 785218 + T 89 -12.3 -2.83228 | opp_overlap 785175 785191, overlap 785175 785173 785171 785191 TAGATAGCTTTTCAG CAAAATGCTATCTAT AAT ATAAATAGCATTTTG TGCTCTTAGTTGTTA TERM 799 785191 - 785213 + T 77 -6.4 -4.55625 | opp_overlap 785175 785191, overlap 785175 785173 785171 785186 AGCTTTTCAGCAAAA TGCTATCTAT AAT ATAAATAGCA TTTTGTGCTCTTAGT TERM 800 785213 - 785191 - T 80 -8.6 -4.25283 | opp_overlap 785175 785173 785171 785191 785186, overlap 785175 AGCTTTTCAGCAAAA TGCTATCTAT AAT ATAAATAGCA TTTTGTGCTCTTAGT BAPKO_0782 785823 - 785224 - | hypothetical protein TERM 801 785685 - 785703 + g 93 -5.4 -5.89659 | CCTCAAGGCTTGCAT TATTTAGA ACT TCTGAATA TTTTTCTTTTTTTAT BAPKO_0783 786244 - 785897 - | hypothetical protein TERM 802 786586 - 786617 + r 100 -16.2 -5.04222 | opp_overlap 786579 CCATTTAATTTTATT TTTCAAGCTTACAA GACC TTGTAAGCTTGAAA TTTTTAATTTGATTG TERM 803 786704 - 786681 - R 89 -9.8 -3.62775 | ATTATTTTTCAATAA TCCTTATAAA ATAT TTTATAAGGA TTAAAGCTAAGTAGC TERM 804 786710 - 786729 + r 80 -6.5 -4.9181 | opp_overlap 786710, overlap 786712 TTTATAAGGATTAAA GCTAAGT AGCTAA ACTTAGC TTTTTACTCTTCTAT groES 787005 - 786733 - | co-chaperonin GroES BAPKO_0785 787163 - 788794 + | ABC transporter, ATP-binding protein BAPKO_0786 788854 - 790509 + | hypothetical protein TERM 805 790487 - 790514 + F 73 -6.5 -4.23999 | opp_overlap 790482 790487 790488 790490, overlap 790479 790484 790488 AGCACATTAATGAAA TTATTTCAATC ATTCAA GATTGAAATAG TTGTTTTGCATATAA TERM 806 790628 - 790638 + G 91 -4 -6.04419 | ATGAAAAAAATGTTA CTAA TCT TTAG TTTTTTTCTTGTTTT BAPKO_0787 790613 - 792604 + | antigen, p83/100 TERM 807 792674 - 792634 - T 100 -15.1 -3.55622 | opp_overlap 792634 792636 792637, overlap 792644 TTGAACTTGTGTAAA TTCTTAAGAAGCTAAAAAC TTT GTTTTTAGCTTCTTAAATA TTTTTTCGGGATGGT TERM 808 792634 - 792674 + T 100 -12.9 -5.03715 | opp_overlap 792634 792644, overlap 792636 792637 TTGAACTTGTGTAAA TTCTTAAGAAGCTAAAAAC TTT GTTTTTAGCTTCTTAAATA TTTTTTCGGGATGGT TERM 809 792636 - 792672 + T 100 -15.5 -4.14633 | opp_overlap 792634 792644, overlap 792634 792637 GAACTTGTGTAAATT CTTAAGAAGCTAAAAAC TTT GTTTTTAGCTTCTTAAA TATTTTTTCGGGATG TERM 810 792637 - 792671 + T 100 -19 -3.08056 | opp_overlap 792634 792644, overlap 792636 792634 AACTTGTGTAAATTC TTAAGAAGCTAAAAAC TTT GTTTTTAGCTTCTTAA ATATTTTTTCGGGAT TERM 811 792664 - 792644 - T 95 -11.3 -3.66772 | opp_overlap 792637 792636 792634, overlap 792634 GTAAATTCTTAAGAA GCTAAAAAC TTT GTTTTTAGC TTCTTAAATATTTTT BAPKO_0788 792738 - 792637 - | hypothetical protein TERM 812 792925 - 792940 + G 79 -3.4 -5.71983 | TTTTTTGTTTTATGT TTATAA TGTT TTATAA TTTTTTTATGATTAA nth 792921 - 793565 + | endonuclease III oppC-2 794434 - 793574 - | oligopeptide ABC transporter, permease protein TERM 813 793760 - 793784 + g 71 -8.7 -2.82471 | opp_overlap 793761, overlap 793747 793759 TTGTTTTTGTAAAAA ACTTACTACTT CAA AAGTAGTAAGA CTTCTTGCCATTTGT TERM 814 793783 - 793761 - G 100 -12.2 -5.00616 | opp_overlap 793760 793759 TGTTTTTGTAAAAAA CTTACTACTT CAA AAGTAGTAAG ACTTCTTGCCATTTG oppB-2 795414 - 794434 - | oligopeptide ABC transporter, permease protein TERM 815 795268 - 795290 + g 91 -10 -4.07568 | opp_overlap 795274 795287, overlap 795272 TATTCCAATGTATTG CAAGTATCCT TTT AGGATATTTG TTTTAACAAAAGGGG TERM 816 795272 - 795286 + g 81 -7.2 -4.64861 | opp_overlap 795274, overlap 795268 CCAATGTATTGCAAG TATCCT TTT AGGATA TTTGTTTTAACAAAA BAPKO_0794 795879 - 795421 - | hypothetical protein BAPKO_0795 795978 - 797099 + | hypothetical protein TERM 817 797090 - 797122 + T 70 -3 -5.49579 | gap 1, overlap 797094 TAAATTTTTACTTAC T-AAAGGTTAAAGAA TCTA TTTTTTAGCCTTTTA TTTTATTTTTTATAA TERM 818 797094 - 797117 + T 81 -5.4 -5.43329 | overlap 797090 TTTTTACTTACTAAA GGTTAAAGAA TCTA TTTTTTAGCC TTTTATTTTATTTTT TERM 819 797260 - 797229 - T 100 -16.2 -4.18506 | opp_overlap 797234 TTATCGGTAAAACAA GACAACATTTTATC AAAA GATAAAATGTTGTC AGTAGTACGCCTACA TERM 820 797234 - 797255 + T 77 -8.9 -3.37796 | opp_overlap 797229 GGTAAAACAAGACAA CATTTTATC AAAA GATAAAATG TTGTCAGTAGTACGC BAPKO_0796 798347 - 797334 - | hypothetical protein TERM 821 797562 - 797584 + g 77 -9.3 -2.86722 | overlap 797564 TTTATTGCTCCACTT GACTTCAAT CTTGT ATTGAAGTC TGTAGTCATCTATTT TERM 822 797759 - 797777 + g 70 -7.6 -3.40401 | overlap 797758 CTTTGTTTAATTTTC TTATCATT TTA AATGATAA ATTTTCTAATTTTGT TERM 823 798291 - 798301 + g 78 -2.6 -5.84011 | overlap 798294 AGATGTTAGCACTAT TATT AAA AATA TTTTTATTTTTTCTT TERM 824 798294 - 798307 + g 74 -2.5 -5.68438 | overlap 798291 TGTTAGCACTATTAT TAAAA ATAT TTTTA TTTTTTCTTTAGTGA BAPKO_0797 799872 - 798364 - | hypothetical protein TERM 825 798628 - 798644 + g 70 -5.9 -4.31329 | overlap 798643 ACTAAATATCATGCT TGATCCT GTT AGGATTA TTTTAGAATTTTTAG TERM 826 798666 - 798680 + g 70 -5 -4.81523 | AATTTTTAGAATATT GTTCTT TAT AAGGAC TTTTAATTTTTCCTT TERM 827 798894 - 798871 - G 75 -9.6 -2.74019 | TACAAGTTCTAATGA GCTGCTCCAA GGAA TTGTAGCAGC ATAAAAATTTTTTAG BAPKO_0798 800611 - 799877 - | hypothetical protein BAPKO_0799 801537 - 800608 - | ABC transporter, ATP-binding protein TERM 828 800814 - 800830 + g 74 -6.7 -4.35095 | TATCATTTTTACTGT TGAAAAA TTT TTTTTCA TTTTCAGATTTTTTT BAPKO_0800 802505 - 801546 - | ribonuclease Z TERM 829 802704 - 802731 + G 71 -7.2 -3.83459 | opp_overlap 802703 802706, overlap 802701 802706 802730 TTTGATTTTAAGAAT GATGCAAAATAT TATA ATATTTTGCATA TCTTTTGATATTATA TERM 830 802729 - 802706 - g 80 -9.8 -2.94045 | opp_overlap 802704 802701 802706, overlap 802703 TGATTTTAAGAATGA TGCAAAATAT TATA ATATTTTGCA TATCTTTTGATATTA TERM 831 802706 - 802729 + G 85 -9.8 -3.48465 | opp_overlap 802706 802703, overlap 802704 802701 TGATTTTAAGAATGA TGCAAAATAT TATA ATATTTTGCA TATCTTTTGATATTA BAPKO_0801 802635 - 802739 + | hypothetical protein BAPKO_0803 803763 - 802696 - | hypothetical protein BAPKO_0802 802675 - 802788 + | hypothetical protein clpP 803962 - 804558 + | ATP-dependent Clp protease proteolytic subunit TERM 832 804663 - 804635 - g 100 -13.5 -2.56046 | opp_overlap 804632 804635 804643, overlap 804640 804643 GCAAATTTTAATTTA TCTAATAATTCTT CTC AAGAATTATTAGA TTCTGCTTATAATAT TERM 833 804635 - 804663 + G 100 -13.5 -3.58184 | opp_overlap 804635 804640 804643, overlap 804632 804643 GCAAATTTTAATTTA TCTAATAATTCTT CTC AAGAATTATTAGA TTCTGCTTATAATAT TERM 834 805143 - 805158 + G 71 -2.6 -5.52986 | opp_overlap 805132 CAAATAAAATTGATT TTAGAG TTTT TTCTAA TTTTTTTGCTAGAGT BAPKO_0805 804536 - 805264 + | hypothetical protein BAPKO_0807 806276 - 805419 - | hypothetical protein BAPKO_0808 806645 - 806316 - | hypothetical protein BAPKO_0809 806756 - 807643 + | hypothetical protein rrp-2 809248 - 807890 - | response regulatory protein TERM 835 808704 - 808693 - G 71 -4.4 -4.93696 | opp_overlap 808693 808690 TTGAAAGATCAAAAA TAGC ATCG GCTA TTATTTCTTTGCCAA BAPKO_0811 809646 - 809251 - | hypothetical protein TERM 836 809611 - 809656 + g 74 -2.1 -5.69262 | opp_overlap 809619 809621, overlap 809610 809613 809618 809619 TAATAGTTTCTCATC AATAAGGATATTGCTTATTTT GTTT AAATTAAGCAATAGTTTTATG TTTTTGTTTTTCTAA TERM 837 809618 - 809649 + g 73 -4.6 -5.0432 | opp_overlap 809619 809621, overlap 809610 809613 809611 809619 TTCTCATCAATAAGG ATATTGCTTATTTT GTTT AAATTAAGCAATAG TTTTATGTTTTTGTT TERM 838 809619 - 809648 + g 74 -8.1 -3.58932 | opp_overlap 809619 809621, overlap 809610 809618 809613 809611 TCTCATCAATAAGGA TATTGCTTATTTT GTTT AAATTAAGCAATA GTTTTATGTTTTTGT TERM 839 809648 - 809619 - G 70 -8.1 -2.96249 | opp_overlap 809610 809619 809618 809613 809611, overlap 809621 TCTCATCAATAAGGA TATTGCTTATTTT GTTT AAATTAAGCAATA GTTTTATGTTTTTGT BAPKO_0812 810400 - 809639 - | sensory transduction histidine kinase, putative BAPKO_0813 811443 - 810397 - | hypothetical protein BAPKO_0814 811942 - 811454 - | colicin V production protein, putative murG 813030 - 811939 - | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecapr TERM 840 812445 - 812467 + g 70 -5.7 -4.32201 | opp_overlap 812445, overlap 812447 GAGATCCCCCAAGTA TGCTAACAA TTGGT TTGTTAGTA TTTTGAGTTAATTGC TERM 841 812887 - 812899 + g 77 -2 -5.83822 | overlap 812895 TTCTTTTATTAATTT TTCT TCTAT AGAA TTTTTTTTGCCTATC pdxK 814002 - 813208 - | pyridoxal kinase TERM 842 813718 - 813728 + gr 71 -2.6 -5.55695 | TTTTTCAAATTTTAT TAAT TTA ATTA TTTTTTCTATTGTTA gcp 815017 - 813977 - | O-sialoglycoprotein endopeptidase TERM 843 814567 - 814583 + gr 100 -5.2 -5.95539 | opp_overlap 814567, overlap 814579 GAGTTCTTCCAAGTA TTTCGA CATCA TCGAAA TTTTTTTGTTTAGCA BAPKO_0818 815895 - 815014 - | hypothetical protein TERM 844 815410 - 815420 + g 74 -4 -5.32608 | opp_overlap 815410 TTTTGCATCAGGATA CATT TTA AATG TTTTTTCAATTTTTT rpoS 816746 - 815946 - | RNA polymerase sigma factor TERM 845 816816 - 816862 + r 73 -7.1 -4.14243 | gap 1, opp_overlap 816817, overlap 816812 816820 ACTTTCATGCAAAAA TTGTG-CCAATTTAGTTTAAAA TCAT TTTTAAATTAAATTGGATATAA TTTTAAGGTGGAGTG TERM 846 816820 - 816857 + r 78 -9.5 -3.10537 | opp_overlap 816817, overlap 816812 816816 TCATGCAAAAATTGT GCCAATTTAGTTTAAAA TCAT TTTTAAATTAAATTGGA TATAATTTTAAGGTG BAPKO_0820 817206 - 816886 - | hypothetical protein flgI 818206 - 817196 - | flagellar basal body P-ring protein BAPKO_0822 818943 - 818380 - | hypothetical protein TERM 847 818622 - 818569 - G 76 -8.5 -3.53091 | opp_overlap 818569 818576, overlap 818574 ATTTTCTTTTGCAAA TACAATAGGCTCAATTATATCAATA TACA TATTAATGTAATTATGCCTTTTGTA ATTTTCAAAGTTTTT TERM 848 818693 - 818703 + g 71 -2.6 -5.55855 | TATGAGTTGTTGCTT TTTA CTT TAAA TTTTATTTTTTTGAA TERM 849 818938 - 818969 + g 79 -9.6 -3.2614 | gap 1, opp_overlap 818945 AGGAGTAATATTAAA GCACAAATTATGAGC AGT GCTCATAA-TTGAGC TTGATGTGAAAAATA TERM 850 818963 - 818945 - R 95 -10.4 -4.16443 | opp_overlap 818938 ATATTAAAGCACAAA TTATGAGC AGT GCTCATAA TTGAGCTTGATGTGA TERM 851 819016 - 818983 - R 79 -7.1 -4.62069 | opp_overlap 818983 818988, overlap 818988 GCTTGATGTGAAAAA TAAAATAAAAACAAA TAAT TTTTTTTTTATTTTA TTGCCTTTTTAAATT flgG 819811 - 819014 - | flagellar basal body rod protein FlgG TERM 852 819645 - 819658 + g 73 -8.1 -3.46399 | overlap 819640 AAAGTATTTTCAGTT GCAGG AGTT CCTGC TCTGTTTTGAGTTTG flhO 820672 - 819824 - | flagellar hook-basal body complex protein TERM 853 820531 - 820546 + g 77 -6.2 -4.7629 | TTAGTCTTCTTATTA GCATTT CTGG AAATGC TTTTTGAATTGATAA TERM 854 820923 - 820948 + G 100 -3.5 -6.55664 | gap 1, opp_overlap 820931, overlap 820931 TTAAGGAGAATTAAT GAATAGAACTTT TTT AAAGTTTT-TTC TTTTTTTTTGTTTTG TERM 855 820931 - 820941 + G 95 -4 -6.17033 | opp_overlap 820931, overlap 820923 AATTAATGAATAGAA CTTT TTT AAAG TTTTTTCTTTTTTTT BAPKO_0825 820921 - 821481 + | hypothetical protein TERM 856 821654 - 821685 + G 86 -7.4 -5.04325 | overlap 821657 821684 TTGTTAAAACCCGAA GTTTATACCTCATT AATA AATGAGGTATATTC TTTTTATAATTTAAA TERM 857 821657 - 821682 + G 100 -12.1 -4.59919 | overlap 821654 TTAAAACCCGAAGTT TATACCTCATT AATA AATGAGGTATA TTCTTTTTATAATTT apt 821546 - 822076 + | adenine phosphoribosyltransferase rplU 822134 - 822445 + | 50S ribosomal protein L21 TERM 858 822710 - 822726 + G 76 -8.1 -3.72968 | opp_overlap 822709 GATTTTTAATTAGAG GCATAAA CGA TTTATGC TTTGAGTATCCTGAT BAPKO_0828 822451 - 822771 + | hypothetical protein rpmA 822771 - 823016 + | 50S ribosomal protein L27 obgE 823058 - 824044 + | GTPase ObgE BAPKO_0831 824001 - 824081 + | hypothetical protein BAPKO_0832 824127 - 824708 + | hypothetical protein TERM 859 825256 - 825281 + GF 78 -7.1 -4.45259 | opp_overlap 825268, overlap 825254 TGAAGAGAGAGGCGA GTTTTTTAAAG AGTT TTTTAAAAAAC TTCTTTTTCAAATTT BAPKO_0833 824705 - 825889 + | hypothetical protein BAPKO_0834 825864 - 826214 + | hypothetical protein BAPKO_0835 826168 - 826317 + | hypothetical protein BAPKO_0836 826318 - 826611 + | regulatory protein SpoVG ctc 826768 - 827316 + | 50S ribosomal protein L25/general stress protein Ctc pth 827321 - 827887 + | peptidyl-tRNA hydrolase BAPKO_0840 827887 - 829209 + | hypothetical protein TERM 860 831098 - 831068 - g 71 -8.4 -2.8185 | TAAAGATGAATACGA TTTATTTGCAGTAG ATT CTACTGCAAAGGAA GTAAAGGGGGAAGAT ftsH 829206 - 831125 + | cell division protein BAPKO_0842 831131 - 832615 + | hypothetical protein TERM 861 832619 - 832596 - Tf 95 -11.2 -3.58522 | opp_overlap 832596 ATGATTATTTTGAAA GTTATCATTC TTTT GAATGATAAC TTTAATAGAATCCCT TERM 862 832596 - 832619 + TF 95 -11.2 -3.74872 | opp_overlap 832596 ATGATTATTTTGAAA GTTATCATTC TTTT GAATGATAAC TTTAATAGAATCCCT TERM 863 833758 - 833788 + GT 82 -2.8 -6.06723 | GATCTTGTTTTTAAG TTTTCTTTAAATAA GGA TTATATAAATAAAA TTTTTTTTTCCAAAG BAPKO_0844 833896 - 833753 - | hypothetical protein tdk 832720 - 833823 + | thymidine kinase BAPKO_0845 834437 - 833820 - | hypothetical protein TERM 864 834462 - 834437 - R 82 -9.3 -3.37487 | opp_overlap 834439 834442, overlap 834435 834442 TGACATTTTTAAACA TATAATTAATC ATAT GATTAATTATA TTAGAATTTTATTAG tmk 835071 - 834463 - | thymidylate kinase TERM 865 834697 - 834715 + g 71 -2.5 -5.38326 | TTTAATAAAGAATAC TTTTTCA GGTAA TGGAAAA TTTTTATTTAATTCA TERM 866 835115 - 835145 + H 93 -13 -2.94354 | opp_overlap 835122, overlap 835100 835122 TCAATAATTAGGTTA TTGATAATTATTAT ATA ATAATAATTATCAA TATATGAGTGTATGA TERM 867 836475 - 836490 + G 74 -4.8 -5.02074 | TTAGTTTTCAAGATT TAAGTT TAAA AACTTA TTTTTTAAAGGATAA TERM 868 836941 - 836955 + G 72 -7.2 -3.95448 | GAATTTTTCTTATTT GGATAA AAA TTATCC TTTAAATTTTAATGT TERM 869 839404 - 839418 + G 72 -7.2 -4.0089 | opp_overlap 839403, overlap 839372 AAAAGAGCAAACGAC TCCTTT TTC AAAGGA TTTAAATTTTGTTAT BAPKO_0847 835157 - 839560 + | hypothetical protein TERM 870 840471 - 840493 + G 100 -10 -4.8269 | opp_overlap 840469, overlap 840492 AGAATTAAAAAGTTT TATCACCTTT AAG GAAGGTGATA TTTTTAATAATTCTA TERM 871 840696 - 840681 - g 74 -2.6 -5.61881 | gap 1 TTCTAAAAATAAAAA TACA-GC TTC GCATGTA ATACTTAGAGAGATC BAPKO_0848 839578 - 842043 + | outer membrane protein BAPKO_0849 842064 - 842597 + | hypothetical protein TERM 872 842610 - 842591 - f 74 -5.1 -5.25772 | AAAGTATAATAAAAA TCCTTAA GACTTT TTAAGGA GGGTGCTTTATTTTT TERM 873 842623 - 842650 + F 83 -7.2 -4.98468 | GGAGGGTGCTTTATT TTTTGCAATCTG CAAT TAGATTGTAAAA TTCTTTTTTTATTGT TERM 874 843327 - 843341 + G 71 -7.2 -3.72592 | opp_overlap 843327, overlap 843324 AGGTTGTTGAGGTAA TAACAC CAG GTGTTA TTGTTGATGAAGATT TERM 875 844251 - 844265 + G 76 -8.6 -3.61517 | ATAGTGCAATTTCAA GCTCAT CTG ATGAGC TTATTAAAAGAGGCT mutS 843020 - 845608 + | DNA mismatch repair protein BAPKO_0851 845610 - 846227 + | competence protein F, putative TERM 876 846225 - 846238 + F 72 -3.9 -5.30686 | TCTTATAATTTGGTT TAATG TTGA CATTA TTTTTTCTAAGTGTT TERM 877 846314 - 846281 - f 85 -11.3 -2.91383 | opp_overlap 846282, overlap 846286 846289 AGGTTTAGTTATATA TTTAATAAGGTTCTT TTAA AAGAACCTTATTAAT TTTAGGAATGTAGTT TERM 878 846282 - 846313 + F 100 -14.8 -4.13282 | opp_overlap 846281 846286 846289 GGTTTAGTTATATAT TTAATAAGGTTCTT TTAA AAGAACCTTATTAA TTTTAGGAATGTAGT TERM 879 846309 - 846286 - f 90 -11.2 -3.16475 | opp_overlap 846282, overlap 846281 846289 TAGTTATATATTTAA TAAGGTTCTT TTAA AAGAACCTTA TTAATTTTAGGAATG TERM 880 846306 - 846289 - f 76 -8.5 -3.72231 | opp_overlap 846282, overlap 846286 846281 TTATATATTTAATAA GGTTCTT TTAA AAGAACC TTATTAATTTTAGGA BAPKO_0852 846328 - 846765 + | hypothetical protein nusA 846779 - 848227 + | transcription elongation factor NusA TERM 881 849330 - 849347 + G 83 -9.9 -3.17051 | overlap 849327 AATTGATGGTGTTAT GCCTCAA ACTA TTGAGGC TATTAATCATGCAAA TERM 882 850101 - 850126 + G 70 -6.9 -4.01101 | opp_overlap 850101 850103 AACTGAAACAGATAT TAGCTTTGCTT CAGC AAGCGATGCTA TTGTTATTGGGTTTC TERM 883 850429 - 850454 + G 88 -10.7 -3.03159 | opp_overlap 850428 850427 CATTCTGGTAAAATT TCATCTTTAAA GAGA TTTAAAGATGA TGTTAAAGAGGTTGC infB 848230 - 850578 + | translation initiation factor IF-2 rbfA 850601 - 850963 + | ribosome-binding factor A truB 850966 - 851814 + | tRNA pseudouridine 55 synthase rpsO 851990 - 852256 + | 30S ribosomal protein S15 pnpA 852271 - 854439 + | polynucleotide phosphorylase/polyadenylase TERM 884 854742 - 854703 - gf 72 -8.2 -3.14132 | opp_overlap 854706, overlap 854724 CTTTTTTCTTAGTAA TGCTTTTTTAAAAGAAAA TAAT TTTTATTTTAAAAAAGCC AGAGAAAGTTATGCT BAPKO_0859 854446 - 855987 + | hypothetical protein TERM 885 856473 - 856488 + GF 71 -2.6 -5.55664 | AGAAATCAGAAAATG GTTATA AAAA TGTAAC TTTTTTTGATAATAC BAPKO_0860 855962 - 857251 + | hypothetical protein TERM 886 857431 - 857447 + G 72 -3.7 -5.32396 | CCAAAAGCTTTCTCA GATGGAG TTG CTTTATC TTTTCTTTTTGCTAT BAPKO_0861 857248 - 858315 + | hypothetical protein TERM 887 859116 - 859073 - g 82 -6.2 -5.13344 | gap 1, opp_overlap 859079 859081, overlap 859074 ATACCAAGAGAAAAA CCAAGATATGTAATGGGCATT GGT ACTCCCCACTACATA-CTTGA TGCTATATACCATGG TERM 888 859115 - 859074 - g 71 -7.5 -3.6638 | gap 1, opp_overlap 859079 859081, overlap 859073 TACCAAGAGAAAAAC CAAGATATGTAATGGGCATT GGT ACTCCCCACTACATA-CTTG ATGCTATATACCATG tgt 858347 - 859474 + | tRNA-guanine transglycosylase TERM 889 860090 - 860105 + G 71 -4 -5.07652 | gap 1, overlap 860093 CCTTATTATTGGTTT TGCCTGG AAG CCAG-CA TTTTATTTTAGAGAA TERM 890 860272 - 860283 + G 82 -4.4 -5.59879 | TGGTTTATTATCAGC TTCC TGTG GGAA TTTTTTATATTTCTA mviN 859467 - 860987 + | virulence factor mviN protein BAPKO_0864 860984 - 862390 + | hypothetical protein dfp 863476 - 862415 - | pantothenate metabolism flavoprotein BAPKO_0866 863834 - 863730 - | hypothetical protein TERM 891 865016 - 865034 + G 86 -4.6 -5.86465 | overlap 865011 TAATATTTTTGCTTT TGGAGCTT TAG AAGTTTCA TTTTTTTCTATTATT TERM 892 865206 - 865216 + G 82 -2.6 -5.93809 | TCTATATGTGCATTT TTAA TAG TTAA TTTTTTTTGTAAAAA panF 863916 - 865250 + | sodium/panthothenate symporter BAPKO_0868 865263 - 866210 + | hypothetical protein BAPKO_0869 866179 - 867126 + | hypothetical protein TERM 893 867530 - 867546 + G 73 -8.1 -3.48824 | opp_overlap 867530, overlap 867528 CTTCTTTTTAACAAA TTAGGAT TAA ATCCTAA TGTTATTGTAGGATC TERM 894 867546 - 867530 - g 80 -8.1 -4.15044 | opp_overlap 867528 867530 CTTCTTTTTAACAAA TTAGGAT TAA ATCCTAA TGTTATTGTAGGATC murC 867116 - 868522 + | UDP-N-acetylmuramate--L-alanine ligase TERM 895 868644 - 868660 + G 84 -9.5 -3.53933 | TTTAAACTTAGGTTA CCAGAAA TTT TTTCTGG TTATGATCTTGATAT TERM 896 869131 - 869104 - g 75 -7.2 -4.08958 | opp_overlap 869103, overlap 869092 869102 GCATTAAAGAAAATA TCTCTAAATTAA TGGA TGAATTTAGAGA CTTAAGTATTGCAGA BAPKO_0871 868533 - 869399 + | hypothetical protein BAPKO_0872 869396 - 869932 + | cytidylate kinase BAPKO_0873 869972 - 870172 + | hypothetical protein TERM 897 871016 - 871030 + G 76 -8.6 -3.67989 | TGATGTTTTATGGTT TCATCC AGA GGATGA TTTAGATGACATTTT miaA 870159 - 871061 + | 2-methylthio-N6-isopentyladenosine tRNA modification enzyme BAPKO_0875 871083 - 871178 + | hypothetical protein BAPKO_0876 871593 - 871222 - | hypothetical protein TERM 898 871630 - 871647 + H 78 -5.7 -5.16472 | overlap 871621 ACTACTTTATAGTGT TACTATA ATAA TATAGTA TTTTTTAGAATTTTT BAPKO_0877 871674 - 872219 + | hypothetical protein BAPKO_0878 872994 - 872212 - | hypothetical protein TERM 899 872557 - 872568 + g 72 -5.8 -4.56436 | opp_overlap 872557, overlap 872554 AAAAAATCCGCTAAA TCCG TAAT CGGA TTCTTTTATTTCGTC TERM 900 872965 - 872981 + g 77 -2.3 -5.9003 | overlap 872967 AATACTTAAAACCAA TATTAGC AGT GTTAATG TTTTTTTATTCATTT BAPKO_0879 873502 - 872987 - | hypothetical protein TERM 901 873197 - 873209 + g 82 -2.7 -6.04324 | overlap 873198 TATTCTTAATTTTAG TGAAA TGA TTTCG TTTTTTATTTTTTGA hrpA 876100 - 873629 - | ATP-dependent helicase TERM 902 873895 - 873908 + g 70 -5.3 -4.60648 | TTTTTTCAGGTTCAT CAATG TTTA CATTG TTTGTTTCATATTTT TERM 903 875595 - 875607 + g 72 -3.5 -5.28414 | opp_overlap 875595 GGTGCATTATTGAAA TATTT TGA AAATA TTTTTGTGTTTATTG topA 878652 - 876103 - | DNA topoisomerase I TERM 904 877827 - 877841 + g 70 -2.9 -5.35222 | overlap 877817 TTTTTTTAGTTTCTA TTGAA ATTAA TTCAA TTTTTTGTCCGTTTT TERM 905 878660 - 878696 + H 72 -7.7 -3.60792 | opp_overlap 878688 878694, overlap 878650 TTTTGCATAAATTCC TTATGTTTATATATTAT AAT ACAATATATAAATATAA TTTAAGAATTAAAAA TERM 906 878794 - 878780 - g 86 -5.8 -5.42862 | opp_overlap 878780 ATATTGGGAAAAAAA TTGAAA ATT TTTCAA TACTTAAGGAGCAGA sbcD 878728 - 879969 + | exonuclease SbcD TERM 907 881321 - 881311 - g 80 -4 -5.73672 | opp_overlap 881311 AAACAAGGAAAAAAA TCTT ATT AAGA TTGATTTGTATAAAG TERM 908 881768 - 881784 + G 76 -6.7 -4.45068 | opp_overlap 881767 881768 AATTTTGATCAAAAT CTTTTAA AGA TTAAAAG TTTATTATTAAAACT sbcC 879956 - 882796 + | exonuclease SbcC TERM 909 882878 - 882897 + G 72 -5.7 -4.5787 | opp_overlap 882878, overlap 882879 ACTAATACTAAATAT TCGCTTG CAGATT CAAGCGG TGTTTTTTTTGATAA xylR-2 882830 - 883768 + | xylose operon regulatory protein BAPKO_0885 884621 - 883782 - | putative lipoprotein ileS 887743 - 884615 - | isoleucyl-tRNA synthetase TERM 910 884756 - 884768 + g 70 -4.9 -4.64844 | ATTTAGTATTTCTTG TAATG TTT CATTA TTTTCTATGTATAAG TERM 911 884830 - 884848 + g 78 -9 -3.2661 | overlap 884822 884833 884838 CTTTTCTTAAATTTT GAATTTGT CTT ACAAATTC TCTTGTAAGTCCTTC TERM 912 884994 - 884978 - G 74 -8.1 -3.52919 | opp_overlap 884975 ATCATTTAATGATAA GTAATAC TTT GTATTAC CCACTTTTATTTCAT TERM 913 886477 - 886488 + g 81 -3 -5.8096 | TTTTTTCATTTACTT CTAA GAGT TTAG TTTTTATTTTTTCTA clpC 889911 - 887764 - | ATP-dependent Clp protease, subunit C TERM 914 889164 - 889178 + g 72 -5.8 -4.51984 | AAGTATGTATTTCGT CAATAA ATA TTATTG TGTTTTTATTTTTTT TERM 915 889381 - 889393 + g 75 -3.4 -5.50774 | GCCAGGCTCACCTAT TAGC ATTGC GCTA TTTTTGTTTCTTCTC TERM 916 889771 - 889786 + g 78 -2.6 -5.80817 | TTCTTTATTGATTTT TGGAAT AATT ATTTCA TTTTTTTCTATTAAA cpsG 891715 - 890006 - | phosphomannomutase TERM 917 890078 - 890095 + g 70 -5.7 -4.37737 | TTCCTTATACTCGAG TTTTACA GATA TGTAAAA TTTAATTTTTGGTTC TERM 918 890267 - 890277 + g 81 -3.2 -5.77677 | overlap 890260 AATTATTTTAATTCC TGCG AAT TGCA TTTTTTGTTCTTTTC TERM 919 890933 - 890951 + g 76 -9 -3.06833 | GTTTGGCATTATTTG GCTTTTTT CCA AAAAAAGC TGTACTTTACTATTT TERM 920 891637 - 891680 + g 70 -2.1 -5.52347 | gap 2, opp_overlap 891658 891660, overlap 891641 891654 TTTTTTGAATTTTTA TTGC-TTCTTCTTGAA-AATA TATA TCTTCTTCAAGAAGAATGTAA TTTTTTAATTTTCTT TERM 921 893739 - 893726 - g 93 -5.3 -5.75945 | opp_overlap 893726 ATTGTCTAAAAAAAA GCTTA TTGA TAAGC TTAAATTTGAACTAG uvrB 891858 - 893852 + | excinuclease ABC subunit B TERM 922 894965 - 894953 - g 75 -3.5 -5.40004 | GATCAAATGAAAAAA TAAAT TTC ATTTA CCAGTCCAAAGAAAT uvrA 893869 - 896721 + | excinuclease ABC, subunit A TERM 923 896808 - 896794 - gf 71 -2.8 -5.51165 | overlap 896802 AAAATTCTAAAAAAA GAGATA AGT TAACTC TAAGTCAAAAATCTT TERM 924 897494 - 897512 + GF 76 -8.2 -3.75419 | AAATGCTATATTTTA TATGGGAA GAG TTCCCGTA TTCTATATTCCTTTT TERM 925 897639 - 897649 + GF 80 -5.4 -5.2696 | opp_overlap 897630, overlap 897630 897627 AATAAATCTTCAAGC GAAG ATT CTTC TTTTTTGGATTTTGA TERM 926 898338 - 898314 - gf 84 -9.4 -3.60475 | opp_overlap 898314 AACCTTTATGTTAAA TCTCCTTTGG AGAAA CCAAAAGAGA TTAATGATCCTACAA TERM 927 898684 - 898694 + GF 70 -6.8 -4.00124 | opp_overlap 898684 ATTATGGCATCACAA GTCC AAA GGAC TTTAATTATGAAATA TERM 928 898736 - 898779 + GF 70 -7 -3.68023 | opp_overlap 898736 898741 898745, overlap 898741 ATTTGATATAAAAAA TAAAACGGATATAAAAATTC ATGC GGATTTTTATAATCGTTTAA TTACTTTTGAAAATT TERM 929 898741 - 898774 + GF 72 -6.9 -4.07675 | opp_overlap 898736 898741 898745, overlap 898736 ATATAAAAAATAAAA CGGATATAAAAATTC ATGC GGATTTTTATAATCG TTTAATTACTTTTGA TERM 930 898774 - 898741 - gf 71 -2.5 -5.51612 | opp_overlap 898741 898736, overlap 898736 898745 ATATAAAAAATAAAA CGGATATAAAAATTC ATGC GGATTTTTATAATCG TTTAATTACTTTTGA BAPKO_0891 896724 - 900125 + | hypothetical protein BAPKO_0893 900674 - 900135 - | hypothetical protein BAPKO_0892 900091 - 900477 + | hypothetical protein TERM 931 900610 - 900565 - GT 70 -7.9 -3.32536 | overlap 900568 AAATCAGTTTCATAA TTAGGGTTTATTTTTATTGTT GTGC AACAATAAAAATAAACCATTG AAAGCGGGAATATTG TERM 932 900607 - 900568 - GT 100 -14 -2.83271 | overlap 900565 TCAGTTTCATAATTA GGGTTTATTTTTATTGTT GTGC AACAATAAAAATAAACCA TTGAAAGCGGGAATA BAPKO_0894 901251 - 900652 - | hypothetical protein BAPKO_0895 902847 - 901261 - | putative lipoprotein TERM 933 903374 - 903391 + G 78 -5.7 -4.91712 | opp_overlap 903374 903377 AACAGATTTTACAAT TAATCTT TTAA AAGATTA TTTTTCTAGCTTAAC TERM 934 903791 - 903801 + G 76 -6.8 -4.59773 | opp_overlap 903790 903791 GTCTGTAGAAAAATT GGCT ATT AGCC TTTTTAAAAATAAGA arcA 903057 - 904286 + | arginine deiminase arcB 904351 - 905337 + | ornithine carbamoyltransferase, catabolic SEQUENCE gi|117621570|ref|NC_008564.1| Borrelia afzelii PKo plasmid lp60, complete sequence (length 59958) BAPKO_2000 1336 - 782 - | hypothetical protein BAPKO_2001 1691 - 2500 + | hypothetical protein TERM 1 2525 - 2556 + F 74 -6 -4.66163 | opp_overlap 2529, overlap 2529 AAAATTACCATATGT AAAAGCATATCTTT TATT AAAGATATGCTTAA TTTTTAACTAAAGAT TERM 2 2552 - 2529 - f 100 -11.2 -4.24948 | opp_overlap 2525 2529 TTACCATATGTAAAA GCATATCTTT TATT AAAGATATGC TTAATTTTTAACTAA TERM 3 2529 - 2552 + F 95 -11.2 -3.83042 | opp_overlap 2529, overlap 2525 TTACCATATGTAAAA GCATATCTTT TATT AAAGATATGC TTAATTTTTAACTAA TERM 4 2659 - 2688 + F 78 -9.6 -3.05769 | opp_overlap 2659 TTAATTTAGCAATAA CCATTAATAATA GATTAA TATTATTAATGG TATATACTTTAAAGG TERM 5 2688 - 2659 - f 84 -9.6 -3.75105 | opp_overlap 2659 TTAATTTAGCAATAA CCATTAATAATA GATTAA TATTATTAATGG TATATACTTTAAAGG TERM 6 2810 - 2830 + G 74 -8.4 -3.26471 | opp_overlap 2808 2810 TATACCAAATCAACA GGTTACTT ATAAA AAGTAACC TTAATATAAAAATAG TERM 7 2830 - 2810 - g 75 -8.4 -3.3692 | opp_overlap 2810, overlap 2808 TATACCAAATCAACA GGTTACTT ATAAA AAGTAACC TTAATATAAAAATAG TERM 8 2950 - 2927 - g 77 -5.3 -5.0925 | overlap 2929 TTTTAAAAGTAAAAA CAGAACAAG CATTTT CTTGTTCAG CAATATTAAAATTGG TERM 9 2948 - 2929 - g 70 -6.5 -4.16392 | overlap 2927 TTAAAAGTAAAAACA GAACAAG CATTTT CTTGTTC AGCAATATTAAAATT BAPKO_2002 2785 - 2973 + | hypothetical protein TERM 10 3361 - 3348 - g 74 -2.3 -5.59879 | opp_overlap 3348 GAGAAAGAGAAAAAA GGTCC AATC GTACC ATTCCTTTTGAATTT BAPKO_2003 3222 - 3707 + | hypothetical protein TERM 11 3893 - 3835 - f 100 -19.8 -4.38774 | opp_overlap 3835 3838 3838 3843 3850 3851 3855 3859 3862 3867, overlap 3838 3850 3855 3862 3867 3874 AACATCATACTAAAA TGATATAATTAATAATTATATTATTAAT ATA ATTAATAATATAATTATTAATTATATTA ATAATTATATTATTA TERM 12 3890 - 3838 - f 100 -21.5 -3.16603 | opp_overlap 3835 3838 3838 3843 3850 3851 3855 3859 3862 3867, overlap 3835 3850 3855 3862 3867 3874 ATCATACTAAAATGA TATAATTAATAATTATATTATTAAT ATA ATTAATAATATAATTATTAATTATA TTAATAATTATATTA TERM 13 3838 - 3890 + F 100 -21.5 -3.33003 | opp_overlap 3838 3835 3850 3855 3862 3867 3874, overlap 3835 3838 3843 3850 3851 3855 3859 3862 3867 ATCATACTAAAATGA TATAATTAATAATTATATTATTAAT ATA ATTAATAATATAATTATTAATTATA TTAATAATTATATTA TERM 14 3843 - 3885 + F 100 -17 -3.73813 | opp_overlap 3838 3835 3850 3855 3862 3867 3874, overlap 3838 3835 3838 3850 3851 3855 3859 3862 3867 ACTAAAATGATATAA TTAATAATTATATTATTAAT ATA ATTAATAATATAATTATTAA TTATATTAATAATTA TERM 15 3903 - 3850 - f 100 -11.1 -3.88097 | gap 1, opp_overlap 3838 3835 3843 3838 3850 3851 3855 3859 3862 3867, overlap 3838 3835 3855 3862 3867 3874 3898 TGATATAATTAATAA TTAT-ATTATTAATATAATTAATAAT ATA ATTATTAATTATATTAATAATTATAT TATTAATTATATTAA TERM 16 3850 - 3878 + F 95 -10.7 -3.89704 | opp_overlap 3838 3835 3850 3855 3862 3867 3874, overlap 3838 3835 3843 3838 3851 3855 3859 3862 3867 TGATATAATTAATAA TTATATTATTAAT ATA ATTAATAATATAA TTATTAATTATATTA TERM 17 3851 - 3902 + F 100 -14.6 -3.89704 | gap 1, opp_overlap 3838 3835 3850 3855 3862 3867 3874 3898, overlap 3838 3835 3850 3843 3838 3855 3859 3862 3867 GATATAATTAATAAT TAT-ATTATTAATATAATTAATAAT ATA ATTATTAATTATATTAATAATTATA TTATTAATTATATTA TERM 18 3897 - 3855 - f 100 -17 -3.04274 | opp_overlap 3835 3850 3843 3838 3851 3855 3859 3862 3867, overlap 3838 3835 3850 3862 3867 3874 TAATTAATAATTATA TTATTAATATAATTAATAAT ATA ATTATTAATTATATTAATAA TTATATTATTAATTA TERM 19 3855 - 3897 + F 100 -17 -3.87112 | opp_overlap 3838 3835 3855 3850 3862 3867 3874, overlap 3835 3850 3843 3838 3851 3859 3862 3867 TAATTAATAATTATA TTATTAATATAATTAATAAT ATA ATTATTAATTATATTAATAA TTATATTATTAATTA TERM 20 3859 - 3905 + F 100 -14.4 -3.55453 | opp_overlap 3838 3835 3855 3850 3862 3867 3874 3898 3903, overlap 3850 3843 3838 3855 3851 3862 3867 TAATAATTATATTAT TAATATAATTAATAATATAATT ATT AATTATATTAATAATTATATTA TTAATTATATTAATA TERM 21 3862 - 3914 + F 100 -21.5 -3.27476 | opp_overlap 3838 3835 3855 3850 3862 3867 3874 3898 3903 3906, overlap 3850 3843 3838 3855 3851 3859 3867 TAATTATATTATTAA TATAATTAATAATATAATTATTAAT TAT ATTAATAATTATATTATTAATTATA TTAATAATTAAAACT TERM 22 3914 - 3862 - f 100 -21.5 -3.26433 | opp_overlap 3850 3843 3838 3855 3851 3859 3862 3867, overlap 3838 3835 3855 3850 3867 3874 3898 3903 3906 TAATTATATTATTAA TATAATTAATAATATAATTATTAAT TAT ATTAATAATTATATTATTAATTATA TTAATAATTAAAACT TERM 23 3867 - 3909 + F 100 -17 -3.73813 | opp_overlap 3838 3835 3855 3850 3867 3862 3874 3898 3903 3906, overlap 3850 3843 3838 3855 3851 3859 3862 ATATTATTAATATAA TTAATAATATAATTATTAAT TAT ATTAATAATTATATTATTAA TTATATTAATAATTA TERM 24 3909 - 3867 - f 100 -17 -3.73144 | opp_overlap 3850 3843 3838 3855 3851 3859 3862 3867, overlap 3838 3835 3855 3850 3862 3874 3898 3903 3906 ATATTATTAATATAA TTAATAATATAATTATTAAT TAT ATTAATAATTATATTATTAA TTATATTAATAATTA TERM 25 3902 - 3874 - f 95 -10.7 -3.89704 | opp_overlap 3850 3843 3838 3855 3851 3859 3867 3862, overlap 3838 3835 3855 3850 3867 3862 3898 TAATATAATTAATAA TATAATTATTAAT TAT ATTAATAATTATA TTATTAATTATATTA TERM 26 3972 - 3984 + G 78 -7.7 -4.41087 | AACGATTATTATATT TGCCA TAT TGGCA TTTCTGTTTAATTGT BAPKO_2004 3949 - 4467 + | outer membrane protein TERM 27 4529 - 4508 - T 100 -13.1 -5.44721 | opp_overlap 4508 ATTACTTTAAAAAAA GCTAGCAGT TAAA ACTGCTAGC TCTTAAAACAACTTT TERM 28 4508 - 4529 + T 95 -13.1 -3.0264 | opp_overlap 4508 ATTACTTTAAAAAAA GCTAGCAGT TAAA ACTGCTAGC TCTTAAAACAACTTT BAPKO_2005 5387 - 4545 - | antigen, S2 BAPKO_2006 6735 - 5488 - | antigen, S1 TERM 29 5616 - 5627 + g 73 -3 -5.44638 | TATTTCTAACTTTAA GAAT TACT ATTC TTTTGTTTTTATTCT TERM 30 6877 - 6861 - R 77 -6.7 -4.58283 | overlap 6863 CAATTGTTTTAAAAA TTGTTTT TTT AAAACAA AAAAACGAATTAAAA BAPKO_2007 7086 - 6967 - | hypothetical protein TERM 31 7120 - 7098 - R 100 -13.6 -4.61633 | opp_overlap 7102 ACATATGGGGAAAAA TTAACTCTCC AAG GGAGAGTTAA TCAAACAATTAATCA TERM 32 7102 - 7116 + r 85 -10 -3.14881 | opp_overlap 7098 ATGGGGAAAAATTAA CTCTCC AAG GGAGAG TTAATCAAACAATTA BAPKO_2008 7617 - 7147 - | chpAI protein, putative TERM 33 7697 - 7687 - H 73 -2.6 -5.75945 | overlap 7671 ATTTTTTAAAAAAAA TATA AAT TATA ATATATCTCAACATT BAPKO_2009 7788 - 8123 + | hypothetical protein BAPKO_2010 8120 - 8992 + | hypothetical protein BAPKO_2011 8995 - 9621 + | hypothetical protein TERM 34 10268 - 10254 - g 75 -3.6 -5.52909 | overlap 10255 CAATACCTAAAAAAA CTTTTG ATA CAAAAA ATGAACAAATTGTAA BAPKO_2012 9677 - 10711 + | hypothetical protein BAPKO_2013 10735 - 10914 + | hypothetical protein BAPKO_2014 10911 - 11330 + | hypothetical protein BAPKO_2015 11320 - 11685 + | hypothetical protein TERM 35 11735 - 11720 - f 82 -9 -4.07568 | opp_overlap 11720 11732, overlap 11731 TTCTTTTTTCCAAAA GTCCCA GAAA TGGGAC TTTTTTCAATAAAAA TERM 36 11720 - 11735 + F 100 -9 -5.08824 | opp_overlap 11720 11731, overlap 11732 TTCTTTTTTCCAAAA GTCCCA GAAA TGGGAC TTTTTTCAATAAAAA ospA 11891 - 12712 + | outer surface protein A ospB 12726 - 13625 + | outer surface protein B TERM 37 13721 - 13749 + F 90 -11.2 -3.28712 | gap 1, opp_overlap 13728, overlap 13722 13728 CAATTTGTTACTTCT G-GGAAAAGTCTC TTAG GAGACTTTTCCTC TTGTAAAAAAGAAAA TERM 38 13722 - 13747 + F 100 -14.9 -3.21276 | opp_overlap 13728, overlap 13721 13728 AATTTGTTACTTCTG GGAAAAGTCTC TTAG GAGACTTTTCC TCTTGTAAAAAAGAA TERM 39 13741 - 13728 - f 71 -6.7 -4.08216 | opp_overlap 13728 13722 13721 TTACTTCTGGGAAAA GTCTC TTAG GAGAC TTTTCCTCTTGTAAA TERM 40 13728 - 13741 + F 75 -6.7 -4.46656 | opp_overlap 13728, overlap 13722 13721 TTACTTCTGGGAAAA GTCTC TTAG GAGAC TTTTCCTCTTGTAAA TERM 41 14069 - 14098 + F 87 -3.8 -6.18768 | opp_overlap 14057 14069, overlap 14057 ACTTACTTTTGTAAA GTATATTTAACA AATATG TATTAAATATAC TTTTTTTTATATTTT TERM 42 15166 - 15151 - g 71 -2.6 -5.53436 | ATAGAATACAAAAAA TATCCA GATT TAGATA AATTGGTTCAAAGGG BAPKO_2018 14200 - 15399 + | hypothetical protein BAPKO_2019 15447 - 16031 + | hypothetical protein BAPKO_2020 16007 - 16759 + | hypothetical protein TERM 43 17279 - 17261 - g 70 -3.2 -5.24129 | opp_overlap 17244 17261 17263, overlap 17263 TTCTTTTAGAAAAAA TTTTTTTC GAA GAAAAAGA TTTTTTATTAAAAAT TERM 44 17261 - 17279 + G 82 -5.4 -5.45652 | opp_overlap 17261 17263, overlap 17244 17263 TTCTTTTAGAAAAAA TTTTTTTC GAA GAAAAAGA TTTTTTATTAAAAAT BAPKO_2021 16789 - 17334 + | hypothetical protein TERM 45 17428 - 17479 + F 100 -17 -5.02715 | opp_overlap 17433 TAAGGACCTGTTACC TTAAAGGGTTTATTGGGGATTCTT TAAA AAGAAATTCCAGTAAACCCTTTAA TTTTTGATTTAGTGT BAPKO_2022 17599 - 17718 + | hypothetical protein TERM 46 17976 - 17951 - f 74 -6.3 -4.69464 | opp_overlap 17951 AAAATATGTGAAAAA CAAATTGTG CGTGCAAT CACAATTTG TTTTAAGACAAGTTT BAPKO_2023 18044 - 18475 + | hypothetical protein TERM 47 18512 - 18549 + T 86 -9.3 -4.01381 | gap 1, opp_overlap 18496 18513 18514, overlap 18514 TGCATTAGCCTAATA AG-GCCAAGCAACCTAAA ACC TTTAGATTGCTTGGCTCA TTGTTTCAATTAGGT TERM 48 18547 - 18513 - T 100 -15.2 -3.66018 | opp_overlap 18512 18514, overlap 18496 18514 GCATTAGCCTAATAA GGCCAAGCAACCTAAA ACC TTTAGATTGCTTGGCT CATTGTTTCAATTAG TERM 49 18514 - 18546 + T 100 -16.5 -3.049 | opp_overlap 18496 18514 18513, overlap 18512 CATTAGCCTAATAAG GCCAAGCAACCTAAA ACC TTTAGATTGCTTGGC TCATTGTTTCAATTA TERM 50 18546 - 18514 - T 100 -18.7 -2.79289 | opp_overlap 18512 18514, overlap 18496 18513 CATTAGCCTAATAAG GCCAAGCAACCTAAA ACC TTTAGATTGCTTGGC TCATTGTTTCAATTA dbpA 19103 - 18591 - | decorin binding protein A TERM 51 19148 - 19138 - R 71 -5.4 -4.6971 | opp_overlap 19141, overlap 19141 TAAATTTTAATAAAA GCAT TTA ATGC ATTAAATTGTAAACA dbpB 19770 - 19219 - | decorin binding protein B TERM 52 19633 - 19646 + g 71 -2.5 -5.43553 | overlap 19640 GTCCTCAGCGTCTTT TTTTA TTTG TAAAA TTTTATTTTTTACAT TERM 53 19758 - 19769 + g 81 -3 -5.75478 | opp_overlap 19758, overlap 19745 CCTCAATTATTAAAT TGAA CTTT TTCA TTTTTTTCTATAGTT TERM 54 19866 - 19856 - R 72 -4 -5.3689 | AGAAATAAAATAAAA TGAA TTT TTCA ATAAAGGCAAAATAA TERM 55 20142 - 20130 - R 75 -5.5 -5.0189 | TAAAAAAAAAAAAGA GAAGC CAT GCTCC CGCAATTTACTGGCT BAPKO_2026 20516 - 20199 - | hypothetical protein BAPKO_2027 20638 - 21231 + | hypothetical protein TERM 56 21365 - 21336 - g 73 -8.1 -3.45768 | opp_overlap 21328 21336, overlap 21328 21326 21349 GCCAAGACCAATCAA TATTGGTTTTAAA GATT TTGAAAACCAATA TTTAACCACTAAGCA TERM 57 21336 - 21365 + G 74 -8.1 -3.55444 | opp_overlap 21328 21326 21336 21349, overlap 21328 GCCAAGACCAATCAA TATTGGTTTTAAA GATT TTGAAAACCAATA TTTAACCACTAAGCA BAPKO_2028 21235 - 22587 + | hypothetical protein TERM 58 22763 - 22727 - g 70 -6.4 -4.20834 | gap 1, overlap 22712 22729 TTTAAAATAATTAAA TATTTTTTTAAAAAAAT TGCA ATTTTTTTAAAAAAA-A CAAGGCCAAAATTAA TERM 59 22762 - 22729 - g 93 -11.5 -3.68647 | overlap 22712 22727 TAAAATAATTAAATA TTTTTTTAAAAAAAT TGCA ATTTTTTTAAAAAAA ACAAGGCCAAAATTA BAPKO_2029 22676 - 22804 + | hypothetical protein BAPKO_2030 22886 - 23311 + | hypothetical protein TERM 60 23601 - 23591 - g 71 -4 -5.10968 | AGGAACAGAGAAAAA CTTA AAT TAAG AGCAAGAGAGCGATA BAPKO_2031 23444 - 23638 + | hypothetical protein BAPKO_2032 23801 - 24340 + | hypothetical protein TERM 61 24425 - 24382 - T 75 -8.5 -3.61506 | opp_overlap 24364 24382 24393, overlap 24356 24364 24383 24393 TCATTTTTAAAAAAC CTTTAAAAAAATAGAGCCA TTTTTT TGACTCTATTTTTTAAAAA TCATTTAATCTTCTA TERM 62 24424 - 24383 - T 80 -9.8 -2.76422 | opp_overlap 24364 24382 24393, overlap 24356 24364 24382 24393 CATTTTTAAAAAACC TTTAAAAAAATAGAGCCA TTTTTT TGACTCTATTTTTTAAAA ATCATTTAATCTTCT TERM 63 24414 - 24393 - T 77 -5.2 -5.4477 | opp_overlap 24364 24393 24382, overlap 24364 24383 24382 AAACCTTTAAAAAAA TAGAGCCA TTTTTT TGACTCTA TTTTTTAAAAATCAT oppA-4 26016 - 24430 - | oligopeptide ABC transporter, periplasmic TERM 64 26241 - 26294 + H 100 -14.9 -4.21676 | opp_overlap 26252 26259, overlap 26252 AAAAAAAAGATTAAT TGGGTTTAAAACTACAAATAGGGCC TTAA GGCCCTATTTGTAGTTTTAAAGAAG TTTTCAATGAATTGT TERM 65 26252 - 26283 + H 100 -20.4 -4.10855 | opp_overlap 26252 26259, overlap 26241 TAATTGGGTTTAAAA CTACAAATAGGGCC TTAA GGCCCTATTTGTAG TTTTAAAGAAGTTTT TERM 66 26283 - 26252 - H 100 -20.4 -4.08692 | opp_overlap 26241 26252, overlap 26259 TAATTGGGTTTAAAA CTACAAATAGGGCC TTAA GGCCCTATTTGTAG TTTTAAAGAAGTTTT TERM 67 26276 - 26259 - H 100 -11.3 -4.208 | opp_overlap 26252 26241, overlap 26252 GTTTAAAACTACAAA TAGGGCC TTAA GGCCCTA TTTGTAGTTTTAAAG BAPKO_2034 26531 - 27181 + | lipoprotein TERM 68 27207 - 27230 + F 100 -8.2 -5.42265 | opp_overlap 27207 27209 TATGTTTTTATAAAA GGCAGGTTCT AATG AGAACTTGTC TTTTTTGTGCTTTAA BAPKO_2035 27289 - 27897 + | hypothetical protein TERM 69 27931 - 27969 + F 95 -10 -4.20918 | gap 1, opp_overlap 27931 27939, overlap 27939 TCAAATGTGTTTAAA TATTAAAA-GGTAGAGA ACTGGC TCTCTACCTTTTTAATA TTTATTGGGATTGGA TERM 70 27969 - 27931 - f 91 -10.7 -3.56594 | gap 1, opp_overlap 27931 27939, overlap 27939 TCAAATGTGTTTAAA TATTAAAA-GGTAGAGAA CTGG CTCTCTACCTTTTTAATA TTTATTGGGATTGGA TERM 71 27939 - 27960 + F 100 -8.8 -4.97461 | opp_overlap 27939 27931, overlap 27931 GTTTAAATATTAAAA GGTAGAGA ACTGGC TCTCTACC TTTTTAATATTTATT TERM 72 27960 - 27939 - f 93 -9.5 -4.49756 | opp_overlap 27931 27939, overlap 27931 GTTTAAATATTAAAA GGTAGAGAA CTGG CTCTCTACC TTTTTAATATTTATT BAPKO_2036 28263 - 29492 + | hypothetical protein BAPKO_2037 29504 - 30103 + | hypothetical protein TERM 73 30098 - 30120 + F 78 -7.9 -4.25848 | opp_overlap 30096 30093 AATAAAAAAGTATTA GCTTAAATT TTTGC AATTTAAGC TTTTAATAAAAAATT BAPKO_2038 30158 - 30769 + | hypothetical protein BAPKO_2039 30786 - 31703 + | hypothetical protein TERM 74 31916 - 31887 - g 74 -8.2 -3.67188 | opp_overlap 31878 ATTTACTTGAAAATA TTTTAATTCTTA AGCGAA TAAGAATTAAAA GCTTAAATGATTCTA BAPKO_2040 31706 - 32161 + | hypothetical protein BAPKO_2041 32158 - 32547 + | hypothetical protein BAPKO_2042 32544 - 32897 + | hypothetical protein BAPKO_2043 32894 - 33433 + | hypothetical protein BAPKO_2044 33492 - 34562 + | hypothetical protein BAPKO_2045 34562 - 34984 + | hypothetical protein BAPKO_2046 35026 - 35517 + | hypothetical protein BAPKO_2047 35510 - 35728 + | hypothetical protein TERM 75 35997 - 36008 + G 73 -4.4 -5.1287 | opp_overlap 35997, overlap 35985 CATTTTTAAAGGCAA TCCT TTTA AGGA TTTTTTCAGTCTAGA BAPKO_2048 35737 - 37116 + | hypothetical protein BAPKO_2049 37147 - 37710 + | hypothetical protein TERM 76 37689 - 37714 + F 90 -10.7 -3.34895 | opp_overlap 37683 37682 37691 TTGCAAAACGTTTAA TATTTTAACCT ATAA AGGTTAAAATA TTAATTAAACATAAC TERM 77 37712 - 37691 - f 74 -8.9 -3.09518 | opp_overlap 37689, overlap 37683 37682 GCAAAACGTTTAATA TTTTAACCT ATAA AGGTTAAAA TATTAATTAAACATA TERM 78 38248 - 38234 - g 74 -2.8 -5.69023 | overlap 38242 AAAAGATTAAAAAAA GAATAG ATG CTAATC AGAGTAGCTTAAAGT TERM 79 38639 - 38658 + G 76 -8 -3.7175 | opp_overlap 38625 38636 GTGAAGATGAATTTT TTGATCTT CAAG AAGATCAA TTTAACTAAATTTTT BAPKO_2050 37750 - 38667 + | outer membrane protein BAPKO_2051 38748 - 39026 + | hypothetical protein BAPKO_2052 39056 - 39328 + | hypothetical protein TERM 80 40265 - 40241 - g 80 -8.7 -3.94933 | opp_overlap 40260 GTAAGGTTAAAAATA CTAGTGCTA GACTAAG TAGCACTAG GGAGTGTGTTTTAAA BAPKO_2053 39391 - 40329 + | hypothetical protein BAPKO_2054 40319 - 40882 + | hypothetical protein BAPKO_2055 42145 - 40946 - | hypothetical protein TERM 81 41388 - 41398 + g 74 -6.8 -4.34771 | overlap 41385 TTTGATGTGTTTGCA GAGC TTT GCTC TTTTGATAAATTTTC TERM 82 41438 - 41453 + g 71 -2.6 -5.52096 | overlap 41450 CTCAATCTCAAGATC TTTGGA TGTT TCTAAA TTTTTTATTGCATTT TERM 83 42253 - 42238 - R 100 -9 -5.63645 | opp_overlap 42238 TTAAAACATAAAAAA TCCCCT ATCA AGGGGA TTTAAGGGGGTATCA TERM 84 42238 - 42253 + r 79 -9 -3.55071 | opp_overlap 42238 TTAAAACATAAAAAA TCCCCT ATCA AGGGGA TTTAAGGGGGTATCA TERM 85 42514 - 42538 + r 76 -9.4 -2.85583 | opp_overlap 42514 42512 42517, overlap 42513 TTTATTAACAAAGGA GAACATCGGA GGTAA TTCGATGTTC CTTTGAATATATTAA BAPKO_2056 42861 - 42628 - | lipoprotein BAPKO_2057 43734 - 42958 - | surface lipoprotein P27 TERM 86 43906 - 43878 - R 74 -6.1 -4.58283 | opp_overlap 43878 43881 43903 TAATTTTTGCAAAAA GAAGTTCTTTAAT ACA ATATAAGAACTTC TTTGGAGGTATTAGA BAPKO_2058 44738 - 44112 - | hypothetical protein BAPKO_2059 44987 - 45166 + | lipoprotein TERM 87 45183 - 45156 - T 75 -8.7 -3.21466 | opp_overlap 45152 45152 45156, overlap 45151 AACCTATGAAGTCAA TGAAAAAGTAA TAAGTT TTACTTTTTCA TGAATTTAGAACACA TERM 88 45156 - 45183 + T 72 -8.7 -2.64155 | opp_overlap 45156 45151, overlap 45152 45152 AACCTATGAAGTCAA TGAAAAAGTAA TAAGTT TTACTTTTTCA TGAATTTAGAACACA TERM 89 45222 - 45248 + T 100 -9 -5.47159 | opp_overlap 45222, overlap 45214 AATTATTTTAAAAAA CTTTTTTGATAA ATT TTATTAAAAAAG TTTTTATTTATTACA TERM 90 45248 - 45222 - T 80 -6.8 -5.07053 | opp_overlap 45214 45222 AATTATTTTAAAAAA CTTTTTTGATAA ATT TTATTAAAAAAG TTTTTATTTATTACA TERM 91 45347 - 45323 - T 100 -13.7 -5.88197 | opp_overlap 45323 45327 TTAAATATAAAAAAA GAAAGAGACCC AAA GAGTCTCTTTC TCATTTTGGATCGCA TERM 92 45323 - 45347 + T 90 -11.5 -3.11208 | opp_overlap 45323, overlap 45327 TTAAATATAAAAAAA GAAAGAGACCC AAA GAGTCTCTTTC TCATTTTGGATCGCA TERM 93 45327 - 45343 + T 73 -6.5 -4.21402 | opp_overlap 45323, overlap 45323 ATATAAAAAAAGAAA GAGACCC AAA GAGTCTC TTTCTCATTTTGGAT BAPKO_2060 46345 - 45371 - | antigen, P35 TERM 94 46171 - 46182 + g 74 -2.2 -5.66989 | GTTTTCCATTTTTAG CGTT TCGA GACG TTTTTTTAATGTTTA TERM 95 46460 - 46475 + r 81 -9 -3.85165 | opp_overlap 46460 AAATCAAAAAAAAAA GAGAGC CAGC GCTCTC TTTGGGTTTAAGGTC TERM 96 46475 - 46460 - R 100 -9 -6.50278 | opp_overlap 46460 AAATCAAAAAAAAAA GAGAGC CAGC GCTCTC TTTGGGTTTAAGGTC BAPKO_2061 47362 - 46511 - | hypothetical protein TERM 97 47486 - 47458 - R 90 -7.6 -4.91987 | opp_overlap 47458 47463 47466, overlap 47463 AATTGAACAATAAAA TAAAAGAAGAGA TTGAC TCTCTTCTTTGA TTAAATAGTTGTAAA TERM 98 47481 - 47463 - R 100 -7.5 -5.33124 | opp_overlap 47458 47463 47466, overlap 47458 AACAATAAAATAAAA GAAGAGA TTGAC TCTCTTC TTTGATTAAATAGTT TERM 99 47463 - 47481 + r 75 -7.5 -3.94404 | opp_overlap 47463 47458, overlap 47458 47466 AACAATAAAATAAAA GAAGAGA TTGAC TCTCTTC TTTGATTAAATAGTT BAPKO_2062 48776 - 47529 - | antigen, P35, putative TERM 100 48560 - 48572 + g 70 -7.7 -3.46138 | ATTCTGGTTGTTTTT GTAGC CCC GCTAC TTGTGCTGCTGCTTT TERM 101 48797 - 48831 + r 79 -9 -3.69434 | opp_overlap 48807 48826, overlap 48792 TATTCCTCGATTTAT TTTTAATGAATTTTAA TAA TTAAAATTAATTAAAA TTTAAAATTAATTAC TERM 102 48889 - 48928 + r 78 -9.6 -2.98361 | opp_overlap 48900, overlap 48900 AGAAATAATCAATAA GTATAAAAAAAGAGCAAA GGTC TTTGCTCTTTTTTTGTGG TGTGCTTATAAGTTT TERM 103 48917 - 48900 - R 100 -8.5 -5.73339 | opp_overlap 48889 48900 ATAAGTATAAAAAAA GAGCAAA GGTC TTTGCTC TTTTTTTGTGGTGTG TERM 104 48900 - 48917 + r 100 -8.5 -5.69473 | opp_overlap 48900, overlap 48889 ATAAGTATAAAAAAA GAGCAAA GGTC TTTGCTC TTTTTTTGTGGTGTG BAPKO_2063 49629 - 48934 - | hypothetical protein BAPKO_2064 50426 - 49707 - | hypothetical protein TERM 105 50593 - 50610 + r 75 -5.6 -5.02476 | opp_overlap 50593 TTTTCAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTTAAAAAATAT TERM 106 50610 - 50593 - R 100 -5.6 -6.34424 | opp_overlap 50593 TTTTCAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTTAAAAAATAT BAPKO_2065 51437 - 50661 - | hypothetical protein TERM 107 50781 - 50794 + g 73 -5.3 -4.77698 | overlap 50775 AATAGTTTCGTTTAA GGTTT TTTT AAACC TTTGTTTTAGTATTA TERM 108 51494 - 51440 - R 100 -15.1 -4.07885 | gap 1, opp_overlap 51442 51449 51453 51456 51460, overlap 51493 TAGTTTTTGTCAAAA TATTCTCCTTTTATATT-AAATTAAT ATTT ATTAATTTTAATATAAAAAGAGAATA TAATCATATTATTTT TERM 109 51442 - 51492 + r 85 -11.1 -2.87548 | gap 1, opp_overlap 51440, overlap 51449 51453 51456 51460 GTTTTTGTCAAAATA TTCTCCTTTTATATT-AAATTAAT ATTT ATTAATTTTAATATAAAAAGAGAA TATAATCATATTATT TERM 110 51532 - 51493 - R 71 -6.8 -4.17582 | opp_overlap 51495 51495 51498 51515, overlap 51440 51495 51525 AATATAAAAAGAGAA TATAATCATATTATTTTA TTTA TTAAATAATATGATTATT ATTTAATATTCAAAG TERM 111 51495 - 51530 + r 86 -9.4 -4.08853 | opp_overlap 51493 51495 51525, overlap 51495 51498 51515 TATAAAAAGAGAATA TAATCATATTATTTTA TTTA TTAAATAATATGATTA TTATTTAATATTCAA TERM 112 51530 - 51495 - R 83 -9.4 -3.64858 | opp_overlap 51495 51495 51498 51515, overlap 51493 51525 TATAAAAAGAGAATA TAATCATATTATTTTA TTTA TTAAATAATATGATTA TTATTTAATATTCAA TERM 113 51498 - 51527 + r 71 -6.7 -4.15114 | opp_overlap 51495 51493 51525, overlap 51495 51495 51515 AAAAAGAGAATATAA TCATATTATTTTA TTTA TTAAATAATATGA TTATTATTTAATATT TERM 114 51593 - 51576 - R 100 -5.6 -6.34424 | opp_overlap 51576 TTTTTAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAACAATAAT TERM 115 51576 - 51593 + r 71 -5.6 -4.58663 | opp_overlap 51576 TTTTTAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAACAATAAT BAPKO_2066 52450 - 51638 - | hypothetical protein TERM 116 52023 - 52035 + g 71 -2.7 -5.48623 | TCGTAATTTAAAGAT GAGTA AAT TATTC TTTTTATTTGTGTTT TERM 117 52492 - 52469 - R 80 -8.4 -4.36914 | opp_overlap 52474, overlap 52482 52488 TCTCTCCTTATAAAA TACAATTAAT AAAT ATTAATTGTA ATACAAAAAAATAAT TERM 118 52588 - 52605 + r 71 -5.6 -4.58663 | opp_overlap 52588 TTTTTAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAACAATAAT TERM 119 52605 - 52588 - R 100 -5.6 -6.34424 | opp_overlap 52588 TTTTTAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAACAATAAT BAPKO_2067 53397 - 52651 - | hypothetical protein TERM 120 52776 - 52786 + g 71 -4 -5.14698 | CAGTTTTGTTTAAGG CTTT TCC AAAG TTTTCTTTTAGCTTT TERM 121 53627 - 53610 - R 100 -5.6 -6.60575 | opp_overlap 53610 AGTTAAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTAAAAAAAATAT BAPKO_2068 54398 - 53673 - | hypothetical protein TERM 122 53796 - 53809 + g 75 -5.3 -4.86613 | AAGGGTTGCGTTTAA GGTTT CTGC AAACC TTTGTTTTAGTTTTA TERM 123 54101 - 54119 + g 84 -9.6 -3.57144 | opp_overlap 54101 CTTCATATTTGGAAA GCTGATCA TAA TGATCGGC TTTAAAAGTGCCCAG TERM 124 54626 - 54609 - R 90 -5.6 -5.86965 | opp_overlap 54609 AGTTAGTAAAAAAAA GAGAAG AATTAA CTTCTC TTTAAAAAAATATCA BAPKO_2069 55425 - 54670 - | hypothetical protein TERM 125 55268 - 55279 + g 90 -3 -6.23545 | AGAGGATCAGCATTT TCAA AATT TTGA TTTTTTTTATTTAGA TERM 126 55400 - 55365 - G 71 -7.2 -3.73414 | opp_overlap 55365 55370, overlap 55370 CACATGAGATGCAAA TTAAAGTTAATATTAT TACA ACAATGTTAACTTTAA TTATATTTAGTTTAG TERM 127 55365 - 55400 + g 72 -7.2 -3.93578 | opp_overlap 55365 55370, overlap 55370 CACATGAGATGCAAA TTAAAGTTAATATTAT TACA ACAATGTTAACTTTAA TTATATTTAGTTTAG TERM 128 55690 - 55673 - R 100 -5.6 -6.41805 | opp_overlap 55673 TGAGTAAAAAAAAAA GAGAAG AATTAA CTTCTC TTTAAAAAAAATATC BAPKO_2070 56434 - 55736 - | hypothetical protein TERM 129 56672 - 56647 - R 100 -14.9 -3.04322 | opp_overlap 56649 56651 56653, overlap 56649 56651 56653 TTTAATCCTTTAATA CACACACTACT AATT AGTAGTGTGTG TGGTCACAACAGGCT TERM 130 56670 - 56649 - R 90 -11.7 -3.0782 | opp_overlap 56649 56651 56653, overlap 56647 56651 56653 TAATCCTTTAATACA CACACTACT AATT AGTAGTGTG TGTGGTCACAACAGG TERM 131 56649 - 56670 + r 88 -11.7 -2.78384 | opp_overlap 56649 56647 56651 56653, overlap 56651 56653 TAATCCTTTAATACA CACACTACT AATT AGTAGTGTG TGTGGTCACAACAGG TERM 132 56668 - 56651 - R 71 -8.5 -3.09452 | opp_overlap 56649 56651 56653, overlap 56649 56647 56653 ATCCTTTAATACACA CACTACT AATT AGTAGTG TGTGTGGTCACAACA TERM 133 56651 - 56668 + r 71 -8.5 -2.94099 | opp_overlap 56651 56649 56647 56653, overlap 56649 56653 ATCCTTTAATACACA CACTACT AATT AGTAGTG TGTGTGGTCACAACA BAPKO_2071 57541 - 56660 - | antigen, P35, putative TERM 134 57037 - 57070 + g 79 -4.7 -5.52347 | overlap 57062 57067 TATAATGGTAGCCAG TTGAGCTTGATGCTT GTTC AAGTATTGAGATCAA TTTTTTGATTTTATT TERM 135 57067 - 57078 + g 70 -3 -5.19998 | overlap 57037 57062 GTTCAAGTATTGAGA TCAA TTTT TTGA TTTTATTTTCATTAT TERM 136 57711 - 57688 - R 75 -7 -4.24294 | opp_overlap 57687, overlap 57681 ATTAATCATTTAAAA TAATTTTTTT TTTA AAAAAAATTA AAATTTTTCGTTTGA BAPKO_2072 57836 - 57699 - | hypothetical protein BAPKO_2073 58076 - 58897 + | outer membrane porin thyX 59105 - 59908 + | FAD-dependent thymidylate synthase SEQUENCE gi|117621646|ref|NC_008565.1| Borrelia afzelii PKo plasmid lp60-2, complete sequence (length 59804) BAPKO_2500 120 - 683 + | hypothetical protein TERM 1 859 - 889 + F 78 -8.6 -3.90592 | opp_overlap 859 861 865 867, overlap 855 ATTATTAGGAGGGAA TATTAATATGAAAA AAA TTTTCACATTAATA TTAATTTTTGGTTTA TERM 2 889 - 859 - f 85 -10.8 -3.10894 | opp_overlap 859 855, overlap 861 865 867 ATTATTAGGAGGGAA TATTAATATGAAAA AAA TTTTCACATTAATA TTAATTTTTGGTTTA TERM 3 887 - 861 - f 74 -9 -3.11272 | opp_overlap 859 855, overlap 859 865 867 TATTAGGAGGGAATA TTAATATGAAAA AAA TTTTCACATTAA TATTAATTTTTGGTT BAPKO_2501 866 - 1363 + | hypothetical protein TERM 4 1431 - 1381 - T 77 -8.7 -3.37959 | gap 2, opp_overlap 1386 1389, overlap 1389 CAAGTGCAATAGTAA CTTTACA-ATCCCAATTGTCA-ATT CAA AATCTGACAATTGGGATCTGTTATG CAATCCAACGATTGA BAPKO_2502 1545 - 1360 - | hypothetical protein TERM 5 1386 - 1426 + g 93 -11.6 -3.32844 | gap 2, opp_overlap 1381 1389, overlap 1389 GCAATAGTAACTTTA CA-ATCCCAATTGTCA-ATT CAA AATCTGACAATTGGGATCTG TTATGCAATCCAACG TERM 6 1422 - 1389 - G 100 -13.5 -3.37732 | gap 1, opp_overlap 1386 1389, overlap 1381 ATAGTAACTTTACAA TCCCAATTGTCA-ATT CAA AATCTGACAATTGGGA TCTGTTATGCAATCC TERM 7 1389 - 1422 + g 100 -13.5 -3.18118 | gap 1, opp_overlap 1389 1381, overlap 1386 ATAGTAACTTTACAA TCCCAATTGTCA-ATT CAA AATCTGACAATTGGGA TCTGTTATGCAATCC TERM 8 1591 - 1602 + H 76 -3 -5.89659 | opp_overlap 1591 AAGACTGGCCACAAT GAAA TTAT TTTC TTTTTCTTTTTTTCT TERM 9 1656 - 1674 + H 70 -6 -4.30995 | opp_overlap 1655 TTGTGTCAAAAACTG TCGTCC AGTCTTC GGACGA TTCTTTTCTAACCCC BAPKO_2503 1777 - 1989 + | hypothetical protein TERM 10 2491 - 2463 - f 87 -10.7 -3.1544 | opp_overlap 2435 2463, overlap 2448 2490 TTATATTAGATTGAA TATTATATTATAT TAA ATATAATATAATA TTTTAAATAAGGAGA TERM 11 2463 - 2491 + F 95 -10.7 -4.18018 | opp_overlap 2448 2463 2490, overlap 2435 TTATATTAGATTGAA TATTATATTATAT TAA ATATAATATAATA TTTTAAATAAGGAGA TERM 12 3306 - 3339 + G 75 -8.5 -3.45849 | gap 1, opp_overlap 3306 TAAAAAACGACATAA TTTCAATATAT-ACCT TAA AGGTTATGTATTGAAA TTGTCATAATGTAAA BAPKO_2504 2513 - 3337 + | hypothetical protein TERM 13 3356 - 3379 + F 83 -9.7 -3.5485 | opp_overlap 3356, overlap 3352 TGTCATAATGTAAAA GCCTATCTT CAATAA AAGATAGGC TTAATGTTTTAACTA TERM 14 3379 - 3356 - f 95 -10.4 -4.3208 | opp_overlap 3356 3352 TGTCATAATGTAAAA GCCTATCTTC AATA AAAGATAGGC TTAATGTTTTAACTA BAPKO_2505 3901 - 4251 + | hypothetical protein TERM 15 4294 - 4323 + F 75 -8.9 -3.21981 | opp_overlap 4293 4292 4294, overlap 4280 4295 AAAAAAGCTAAAAGC TTTTATATCATTT GTAA AAATGATATAAAG TATTGGTGCTATTTT TERM 16 4295 - 4322 + F 78 -10.2 -2.52104 | opp_overlap 4293 4294 4292, overlap 4280 4294 AAAAAGCTAAAAGCT TTTATATCATTT GTAA AAATGATATAAA GTATTGGTGCTATTT TERM 17 4491 - 4507 + G 84 -6.7 -5.0133 | opp_overlap 4491 ATAAAGAAGATTTAA CTTTATA TCT TATAAAG TTTTTTAAAAAAATA TERM 18 4531 - 4521 - g 71 -2.6 -5.40474 | AGTTTTTTAAAAAAA TAAT AAT ATTA TTGAAATCTAAAGAG TERM 19 4847 - 4866 + G 84 -6.6 -5.00616 | overlap 4865 ATTTTAATTTCTGTT TATTCTAA TAAT TTAGAATA TTTTTTAAAAAAAAA BAPKO_2506 4400 - 5080 + | hypothetical protein TERM 20 5799 - 5842 + F 73 -3.4 -5.47821 | gap 1, opp_overlap 5824, overlap 5809 GTAAAATTACTTAGA TGAGCTACTGTTTCTA-AATT AGA GATTATAGAATAAGTAGTTCA TTTTTTTAGCTAACT TERM 21 6176 - 6138 - g 100 -9.2 -5.36314 | opp_overlap 6147 6152, overlap 6140 GAAAATATTAAAAAA GATATTACAGAAAATATT AAA AATATTTTCTGTAATAAT GAAGAATTTGGGTCA TERM 22 6174 - 6140 - g 100 -16.2 -4.27753 | opp_overlap 6147 6152, overlap 6138 AAATATTAAAAAAGA TATTACAGAAAATATT AAA AATATTTTCTGTAATA ATGAAGAATTTGGGT TERM 23 6147 - 6167 + G 71 -8.5 -2.82516 | opp_overlap 6140 6138, overlap 6152 AAAAAAGATATTACA GAAAATATT AAA AATATTTTC TGTAATAATGAAGAA TERM 24 6639 - 6665 + G 100 -12.6 -3.00565 | opp_overlap 6635 GCTTTAACAGATTTT TTTACTCTTTTT TAT AAAAAGAGTAAA TGTAGTTATATGCTT BAPKO_2507 5952 - 6845 + | hypothetical protein TERM 25 7217 - 7195 - T 70 -3.6 -5.1244 | opp_overlap 7199, overlap 7196 7197 TGATTAATATAAAAA CCTATAAAAA CTC TTTTTATAAA TTACCAATAATTTTT BAPKO_2508 11277 - 7447 - | hypothetical protein TERM 26 9843 - 9863 + g 71 -3.9 -5.05113 | overlap 9844 AGTCAGTTAAGTCAT CCGGGGTAT AAT ATGCTCCGC TTTTCTTTCTATCAA TERM 27 10337 - 10325 - G 95 -4.9 -5.9873 | TCATCATAAAAAAAA TATCT AAA AGATA TAGAAGACCTGTATA TERM 28 10432 - 10414 - G 76 -4 -5.49234 | overlap 10407 ATATGCAATAAAAAA TATTCTTA AAA TAAAAATA ATTGATTCTTCAAGA TERM 29 10561 - 10571 + g 80 -5.4 -5.20154 | CTTCTCATAAAGTAT CTCT CTA AGAG TTTTTTGAATTATCT BAPKO_2509 11627 - 11397 - | hypothetical protein BAPKO_2510 11903 - 11700 - | hypothetical protein BAPKO_2511 11961 - 11818 - | hypothetical protein TERM 30 11950 - 11930 - GH 75 -3.4 -5.46698 | CCTAAAATTAAAAAA TAAACCAA AGTTA TTGATTTA CAACTTTTCAACAAG BAPKO_2512 12703 - 13620 + | hypothetical protein TERM 31 13809 - 13834 + GF 74 -4.9 -5.16472 | opp_overlap 13813 13816, overlap 13810 13813 TTGTTTTTCAAGAAT TTAATAATCTT AATA AAGATTATTAC TTTTTTAACCTTTTT TERM 32 13810 - 13833 + GF 76 -8.4 -3.67443 | opp_overlap 13813 13816, overlap 13809 13813 TGTTTTTCAAGAATT TAATAATCTT AATA AAGATTATTA CTTTTTTAACCTTTT TERM 33 13970 - 13958 - gf 78 -2.7 -5.8187 | overlap 13943 TATGCAATAAAAAAA CTATA TTA CATAG AGTTTAGGTTTAAAA BAPKO_2513 13613 - 14179 + | hypothetical protein BAPKO_2514 14152 - 14907 + | hypothetical protein TERM 34 14947 - 14962 + F 74 -9 -3.03701 | TTACTTATCTAGAGT TGTCCG ATAT CGGACA TGTAATTTAATCAAA TERM 35 15410 - 15389 - g 77 -7.5 -4.1421 | opp_overlap 15379, overlap 15379 15378 15376 TATATTAAAGAACAA TTCTTTATA TGTA TATAAAGAA AATATGATTAAAGAA BAPKO_2515 15003 - 15632 + | hypothetical protein TERM 36 15709 - 15720 + F 93 -7.2 -5.64274 | AGTAGTAAAATATTT GCCC ATAG GGGC TTTTTTTGTGCCTGC BAPKO_2516 15791 - 16135 + | hypothetical protein BAPKO_2517 16427 - 16534 + | hypothetical protein TERM 37 16640 - 16623 - T 71 -7.1 -3.95442 | overlap 16621 AAATAAAGCAAAACA TACAAGT AATT ACTTGTA AAATTTAAATAATTT BAPKO_2518 17174 - 16914 - | hypothetical protein TERM 38 17606 - 17571 - R 71 -6.4 -4.18762 | gap 1, opp_overlap 17564 17577 17602, overlap 17573 17577 AATCTTTAGCTAAAA CAT-TAAGCCTATCTTT AAT AAAGATAGGCTTTTATA TTATTATAATTTTAA TERM 39 17603 - 17573 - R 76 -8.4 -3.69216 | opp_overlap 17564 17577 17602, overlap 17571 17577 TCTTTAGCTAAAACA TTAAGCCTATCTTT AAT AAAGATAGGCTTTT ATATTATTATAATTT TERM 40 17577 - 17599 + r 100 -13.6 -4.82162 | opp_overlap 17573 17571 17577, overlap 17564 TAGCTAAAACATTAA GCCTATCTTT AAT AAAGATAGGC TTTTATATTATTATA TERM 41 17599 - 17577 - R 100 -13.6 -3.5485 | opp_overlap 17564 17577, overlap 17573 17571 TAGCTAAAACATTAA GCCTATCTTT AAT AAAGATAGGC TTTTATATTATTATA BAPKO_2519 18611 - 17628 - | hypothetical protein BAPKO_2520 19291 - 20145 + | hypothetical protein TERM 42 20858 - 20827 - T 91 -8.2 -5.06103 | opp_overlap 20827 20830 ATAATTTGCAAAAAA TAACAACTAGTCAA ATTT CTTACTAGTTGTTA TTTACATATAAAAAA TERM 43 20827 - 20858 + T 73 -7.5 -3.70902 | opp_overlap 20827, overlap 20830 ATAATTTGCAAAAAA TAACAACTAGTCA AATTTC TTACTAGTTGTTA TTTACATATAAAAAA BAPKO_2521 21902 - 20892 - | hypothetical protein TERM 44 20922 - 20942 + g 72 -4.9 -4.87389 | overlap 20924 GTTAACAATATTCTC TTTAATTTT TTC AAAATTAGA TTTGTTTTTAAGGTA TERM 45 21656 - 21637 - G 71 -8.6 -2.87132 | opp_overlap 21637, overlap 21641 TCTTCTGTTGACATA TCAATCGG GTCA CCGATCGA TGTTAACGGCTCCCC TERM 46 22312 - 22328 + H 73 -6.7 -4.19649 | opp_overlap 22312 22311, overlap 22299 22318 ATTTTTAATAAAATT TGATTTT AAT AAAATCA TTATTATTTAATTTT BAPKO_2522 22598 - 23146 + | hypothetical protein TERM 47 23247 - 23235 - T 73 -3.5 -5.58454 | opp_overlap 23235 TTTATACTAAAAAAA TATAA TAT TTATA AATTTTTAATAGTAT TERM 48 23476 - 23421 - T 85 -10.2 -3.1984 | overlap 23419 GATAATATTAATATA TTTTTGTGATATTTTTTTCAAACC CTAAGCCT AGTAAGAAAAAAATATCACAAAAA TAATCCGGATGAATT BAPKO_2523 24028 - 23546 - | hypothetical protein TERM 49 23619 - 23599 - G 71 -8.3 -3.14745 | overlap 23597 23595 GTGTTAGAATAGATA TAGCAGCGG GAA CCACTACTA CTACAATAATACTTA BAPKO_2524 24928 - 24605 - | hypothetical protein TERM 50 24673 - 24687 + g 70 -5.8 -4.36914 | TCTCTTCCTTTCTCC TAAATG CCT CATTTA TTTTATAAGAAAAAG TERM 51 24765 - 24775 + g 80 -5.4 -5.21709 | opp_overlap 24763 24765 GATAATTGCAACACA CAAG ATC CTTG TTTTTTACTCTCCAA TERM 52 25595 - 25542 - R 100 -15.1 -3.37474 | opp_overlap 25541 25550 25554, overlap 25543 25584 GAGAATATGTGATAA GTTGTGAACTAATATTTCTATAATC AAAA AATTATAGAAATATTAGTTCACTAA AACATTTAAAATGTT TERM 53 25594 - 25543 - R 100 -18.6 -2.62003 | opp_overlap 25541 25550 25554, overlap 25542 25584 AGAATATGTGATAAG TTGTGAACTAATATTTCTATAATC AAAA AATTATAGAAATATTAGTTCACTA AAACATTTAAAATGT TERM 54 25550 - 25587 + r 95 -13.2 -3.06312 | opp_overlap 25543 25542 25584, overlap 25541 25554 GTGATAAGTTGTGAA CTAATATTTCTATAAT CAAAAA ATTATAGAAATATTAG TTCACTAAAACATTT TERM 55 25554 - 25583 + r 74 -8.2 -3.37344 | opp_overlap 25543 25542, overlap 25550 25541 TAAGTTGTGAACTAA TATTTCTATAAT CAAAAA ATTATAGAAATA TTAGTTCACTAAAAC BAPKO_2525 26796 - 25621 - | hypothetical protein BAPKO_2526 27104 - 26919 - | hypothetical protein BAPKO_2527 31027 - 27194 - | hypothetical protein TERM 56 29594 - 29612 + g 100 -8.2 -6.30182 | GTCAGTTAAATCTTC TGGAGTAT AAT ATGCTCCA TTTTTTTTTCTGTCA TERM 57 30087 - 30075 - G 91 -4.1 -5.9873 | overlap 30084 30086 TTATTATAAAAAAAA TGCCT AAA AGACA TATAAGATTTATATG TERM 58 30655 - 30635 - G 71 -7.7 -3.53012 | opp_overlap 30635 GTCTTTCGCGTCAAA GCTAAAAGT AGG ACTTTTAAC TTCTGCTATAAGCAA TERM 59 31772 - 31757 - H 80 -2.6 -6.04953 | overlap 31759 AGATAAACAAAAAAA TACTTT TAAA AAAGCA GCTTAAGGTGATCTT TERM 60 32303 - 32285 - H 70 -3.3 -5.29385 | AAGCCAATTAAAAAA TAAATAA TAACT TTATTTA CCCATTTATATCAGT BAPKO_2528 32613 - 32786 + | hypothetical protein BAPKO_2529 33033 - 32875 - | hypothetical protein BAPKO_2530 34078 - 34218 + | hypothetical protein BAPKO_2531 34708 - 34941 + | hypothetical protein TERM 61 36001 - 35952 - T 78 -6.8 -4.86033 | gap 2, opp_overlap 35954 35957, overlap 35953 35954 AAATTTTTATAAAAA GCTCAGGGCTTGTATAAATTCTCT TATT AAAGAACTTATATAAGCCCT--GC TTGCCTCTCATAAAA TERM 62 36002 - 35953 - T 83 -9.5 -3.50535 | opp_overlap 35954 35957, overlap 35952 35954 AATTTTTATAAAAAG CTCAGGGCTTGTATAAATTCTCT TATT AAAGAACTTATATAAGCCCTGCT TGCCTCTCATAAAAT TERM 63 35954 - 36001 + T 87 -10.8 -3.14468 | opp_overlap 35952 35953 35954, overlap 35957 ATTTTTATAAAAAGC TCAGGGCTTGTATAAATTCTCT TATT AAAGAACTTATATAAGCCCTGC TTGCCTCTCATAAAA TERM 64 36001 - 35954 - T 90 -13 -2.69598 | opp_overlap 35954 35957, overlap 35952 35953 ATTTTTATAAAAAGC TCAGGGCTTGTATAAATTCTCT TATT AAAGAACTTATATAAGCCCTGC TTGCCTCTCATAAAA TERM 65 35957 - 35998 + T 85 -11.1 -2.77658 | opp_overlap 35952 35954 35953, overlap 35954 TTTATAAAAAGCTCA GGGCTTGTATAAATTCTCT TATT AAAGAACTTATATAAGCCC TGCTTGCCTCTCATA TERM 66 36232 - 36198 - T 82 -10.4 -2.76201 | opp_overlap 36203 36231, overlap 36194 36203 AAAAATAAGAAGCTA CTAAATACTATATTAT TAA ATAATATAGTATTTAT AAATAGTAAAATATG TERM 67 36203 - 36227 + T 95 -10.3 -3.93695 | opp_overlap 36203 36198 36194 TAAGAAGCTACTAAA TACTATATTAT TAA ATAATATAGTA TTTATAAATAGTAAA TERM 68 36227 - 36203 - T 91 -10.3 -3.81929 | opp_overlap 36203, overlap 36198 36194 TAAGAAGCTACTAAA TACTATATTAT TAA ATAATATAGTA TTTATAAATAGTAAA BAPKO_2532 36561 - 36466 - | hypothetical protein BAPKO_2533 36577 - 36485 - | hypothetical protein BAPKO_2534 36957 - 36811 - | hypothetical protein BAPKO_2535 37069 - 37016 - | hypothetical protein TERM 69 37035 - 37056 + g 81 -3.1 -5.85737 | overlap 37025 37036 TTTTCCGAAATTCTT TTGTTAATT TTTA AATTAACAC TTTTTTTATTCATAT TERM 70 37036 - 37055 + g 72 -6.6 -4.09002 | overlap 37025 37035 TTTCCGAAATTCTTT TGTTAATT TTTA AATTAACA CTTTTTTTATTCATA BAPKO_2536 37880 - 37128 - | hypothetical protein BAPKO_2537 38410 - 37856 - | hypothetical protein TERM 71 37956 - 37987 + g 81 -3.2 -5.86609 | gap 1, opp_overlap 37960, overlap 37960 AATTTTGTAAACATA TC-AATACATGCTAT ATT ATAGGGTGTATTTGA TTTTTCTTTTTTTAA TERM 72 38112 - 38126 + g 82 -4.4 -5.61689 | ATTCCATTTGTTTCA TATTTT ACA AAAATA TTTTTTATTGGTTTT TERM 73 38311 - 38321 + g 80 -5.4 -5.2853 | TTTTTGTATGGTATA TGGT TTT ACCA TTTTGTTTTTCGATC TERM 74 38456 - 38466 + r 79 -4 -5.75599 | TTCTTTTACGCTTAA GAAA TTT TTTC TTTTTTTATCGTTTC BAPKO_2538 39522 - 38452 - | hypothetical protein TERM 75 39573 - 39604 + H 79 -9 -3.74747 | opp_overlap 39571 39574, overlap 39574 TATATATAGCACACT ATTTGAATAAAAGT AAAT ACTTTTATTCAAAA TTTCATAAAAATTAA TERM 76 39574 - 39603 + H 89 -12.5 -2.84527 | opp_overlap 39571 39574, overlap 39573 ATATATAGCACACTA TTTGAATAAAAGT AAAT ACTTTTATTCAAA ATTTCATAAAAATTA TERM 77 39603 - 39574 - H 88 -12.5 -2.69674 | opp_overlap 39574 39573, overlap 39571 ATATATAGCACACTA TTTGAATAAAAGT AAAT ACTTTTATTCAAA ATTTCATAAAAATTA TERM 78 39770 - 39819 + G 82 -9.5 -3.50535 | opp_overlap 39771 39774, overlap 39771 39771 ATTTTATGAGAGGCA AGCAGGGCTTATATAAGTTCTTT AATA AGAGAATTTATACAAGCCCTGAG CTTTTTATAAAAATT TERM 79 39818 - 39771 - g 90 -10.8 -3.14468 | opp_overlap 39770 39771 39771, overlap 39774 TTTTATGAGAGGCAA GCAGGGCTTATATAAGTTCTTT AATA AGAGAATTTATACAAGCCCTGA GCTTTTTATAAAAAT TERM 80 39771 - 39820 + G 83 -6.8 -4.86033 | gap 2, opp_overlap 39771 39774, overlap 39771 39770 TTTTATGAGAGGCAA GC--AGGGCTTATATAAGTTCTTT AATA AGAGAATTTATACAAGCCCTGAGC TTTTTATAAAAATTT TERM 81 39771 - 39818 + G 100 -13 -2.69598 | opp_overlap 39771 39774, overlap 39770 39771 TTTTATGAGAGGCAA GCAGGGCTTATATAAGTTCTTT AATA AGAGAATTTATACAAGCCCTGA GCTTTTTATAAAAAT TERM 82 39815 - 39774 - g 86 -11.1 -2.77658 | opp_overlap 39771 39770 39771, overlap 39771 TATGAGAGGCAAGCA GGGCTTATATAAGTTCTTT AATA AGAGAATTTATACAAGCCC TGAGCTTTTTATAAA BAPKO_2539 39691 - 39885 + | hypothetical protein TERM 83 39919 - 39909 - f 73 -2.6 -5.66868 | opp_overlap 39909 AATTAAGGAAAAAAA TATT AAG AATA TGTTTATTAATAATA BAPKO_2540 40723 - 40896 + | hypothetical protein TERM 84 41094 - 41105 + T 82 -4.4 -5.67283 | CCTTTTGTAGCTTTT CTGA TTCT TCAG TTTTTTCTTTAAATT BAPKO_2541 41796 - 41188 - | hypothetical protein BAPKO_2542 44079 - 43297 - | hypothetical protein TERM 85 44144 - 44199 + r 100 -24.2 -2.91728 | opp_overlap 44144 44146 44151, overlap 44146 44151 TACTCTAATATTATA CACTAAATTTAATTATTTTAATATTA TATA TAATATTAAAATAATTAAATTTAGTG TATAATATTAGAAGT TERM 86 44199 - 44144 - R 100 -24.2 -2.92026 | opp_overlap 44144 44146 44151, overlap 44146 44151 TACTCTAATATTATA CACTAAATTTAATTATTTTAATATTA TATA TAATATTAAAATAATTAAATTTAGTG TATAATATTAGAAGT TERM 87 44197 - 44146 - R 100 -21 -3.00923 | opp_overlap 44146 44144 44151, overlap 44144 44151 CTCTAATATTATACA CTAAATTTAATTATTTTAATATTA TATA TAATATTAAAATAATTAAATTTAG TGTATAATATTAGAA TERM 88 44146 - 44197 + r 100 -21 -3.00923 | opp_overlap 44144 44146 44151, overlap 44144 44151 CTCTAATATTATACA CTAAATTTAATTATTTTAATATTA TATA TAATATTAAAATAATTAAATTTAG TGTATAATATTAGAA TERM 89 44151 - 44192 + r 100 -15.1 -3.90358 | opp_overlap 44146 44144 44151, overlap 44146 44144 ATATTATACACTAAA TTTAATTATTTTAATATTA TATA TAATATTAAAATAATTAAA TTTAGTGTATAATAT TERM 90 44192 - 44151 - R 100 -15.1 -3.90358 | opp_overlap 44151 44146 44144, overlap 44146 44144 ATATTATACACTAAA TTTAATTATTTTAATATTA TATA TAATATTAAAATAATTAAA TTTAGTGTATAATAT BAPKO_2543 44606 - 44529 - | hypothetical protein BAPKO_2544 45770 - 45087 - | hypothetical protein TERM 91 45828 - 45842 + H 70 -2.8 -5.55769 | opp_overlap 45830, overlap 45830 TATTAGGAGACATAC AACATG AAT CATGTA TTTTTTATTATCAAA TERM 92 46305 - 46335 + H 95 -12.9 -3.78775 | opp_overlap 46305 46308, overlap 46308 TTACTAAGAATACAA GAATAGATGATAT AATAG ATATCATCTATTC TTTGCTGCTGCCAGA TERM 93 46335 - 46305 - H 100 -12.9 -3.85505 | opp_overlap 46305 46308, overlap 46308 TTACTAAGAATACAA GAATAGATGATAT AATAG ATATCATCTATTC TTTGCTGCTGCCAGA TERM 94 46332 - 46308 - H 82 -8.8 -4.03767 | opp_overlap 46308 46305, overlap 46305 CTAAGAATACAAGAA TAGATGATAT AATAG ATATCATCTA TTCTTTGCTGCTGCC TERM 95 46308 - 46332 + H 82 -8.8 -4.0274 | opp_overlap 46305 46308, overlap 46305 CTAAGAATACAAGAA TAGATGATAT AATAG ATATCATCTA TTCTTTGCTGCTGCC TERM 96 46384 - 46402 + H 77 -3.2 -5.77677 | opp_overlap 46380, overlap 46381 46386 46399 CTCAAATTAAGCCTT TCTAAAAG ATT CTTTTAAA TTTTTTATTGTTTTA TERM 97 46451 - 46465 + H 70 -2.8 -5.47159 | opp_overlap 46453, overlap 46453 TTTTGCCAAATTAGA TACCTT TTG AAGGTC TTTTTTGTATTAACC TERM 98 46492 - 46502 + H 80 -2.6 -6.02919 | overlap 46482 AACCACTTTTTGTTT TAAA GAG TTTA TTTTTTTCTTTATAA TERM 99 46807 - 46794 - g 76 -3.9 -5.48028 | opp_overlap 46794 TAAAGAAAAAGAAAA TGAAA ATAA TTTCA TTGTAGCCAGTCTTT BAPKO_2545 46660 - 46971 + | hypothetical protein TERM 100 47014 - 46972 - T 74 -8.1 -3.32844 | gap 2, opp_overlap 46967, overlap 46974 CGTTGGATTGCATAA TA-GATCCCAATTGTCA-ATT CAA AATCTGGCAATTGGGATCGTA AAGTTAGTATTGCAC TERM 101 47011 - 46974 - T 93 -12.3 -3.23393 | gap 1, opp_overlap 46967, overlap 46972 TTGGATTGCATAATA GATCCCAATTGTCA-ATT CAA AATCTGGCAATTGGGATC GTAAAGTTAGTATTG BAPKO_2546 47256 - 47035 - | hypothetical protein TERM 102 47539 - 47490 - H 75 -3.7 -5.52384 | gap 1, opp_overlap 47482 47490 TTCTCATCAAAAAAA GCTTGAGCGGCTTGTT-TTTGCTT ATT AGGCAAATAACAACCCAATAAAGC TAATATTATTATACA TERM 103 47877 - 47847 - H 85 -10.8 -3.10894 | opp_overlap 47843 47847, overlap 47849 47853 47855 ATTATTAGGAGGGAA TATTAATATGAAAA AAA TTTTCACATTAATA TTAATTTTTAGTTTA TERM 104 47847 - 47877 + H 78 -8.6 -3.90592 | opp_overlap 47847 47849 47853 47855, overlap 47843 ATTATTAGGAGGGAA TATTAATATGAAAA AAA TTTTCACATTAATA TTAATTTTTAGTTTA TERM 105 47875 - 47849 - H 74 -9 -3.11272 | opp_overlap 47847 47843, overlap 47847 47853 47855 TATTAGGAGGGAATA TTAATATGAAAA AAA TTTTCACATTAA TATTAATTTTTAGTT BAPKO_2547 47854 - 48042 + | hypothetical protein TERM 106 48095 - 48110 + G 70 -4.8 -4.67234 | AGACTATAATGAGGA GAATTT TAAT AAATTC TTTTTAGACTTAGGT BAPKO_2548 48072 - 48290 + | hypothetical protein TERM 107 48358 - 48405 + T 85 -10.4 -3.09193 | opp_overlap 48374, overlap 48374 GTCTTGAAGGTTAGT TTTTATACTAAAAAAATATAAT ATAT ATTATTATTTTTTAGTATAAAA TTAAGTAAATCTCAT TERM 108 48384 - 48374 - T 70 -2.6 -5.58454 | opp_overlap 48358 48374 TTTATACTAAAAAAA TATA ATA TATA TTATTATTTTTTAGT BAPKO_2549 49368 - 48442 - | hypothetical protein BAPKO_2550 49819 - 49361 - | hypothetical protein TERM 109 49830 - 49879 + r 100 -19.9 -3.2819 | opp_overlap 49834 49838 49841, overlap 49823 49834 49838 49841 TTCATTTCTTACTAC TTAAGTAATAATATTTTGCGCTA TTTG TAGCACAAAATATTATTACTTAA TTACTACTATTGAGT TERM 110 49834 - 49875 + r 100 -16.3 -3.42809 | opp_overlap 49834 49838 49841, overlap 49823 49830 49838 49841 TTTCTTACTACTTAA GTAATAATATTTTGCGCTA TTTG TAGCACAAAATATTATTAC TTAATTACTACTATT TERM 111 49875 - 49834 - R 100 -18.5 -3.09516 | opp_overlap 49823 49830 49834 49838 49841, overlap 49838 49841 TTTCTTACTACTTAA GTAATAATATTTTGCGCTA TTTG TAGCACAAAATATTATTAC TTAATTACTACTATT TERM 112 49838 - 49871 + r 93 -11.3 -3.46824 | opp_overlap 49838 49834 49841, overlap 49834 49830 49841 TTACTACTTAAGTAA TAATATTTTGCGCTA TTTG TAGCACAAAATATTA TTACTTAATTACTAC TERM 113 49871 - 49838 - R 100 -13.5 -3.38316 | opp_overlap 49834 49830 49838 49841, overlap 49834 49841 TTACTACTTAAGTAA TAATATTTTGCGCTA TTTG TAGCACAAAATATTA TTACTTAATTACTAC TERM 114 49841 - 49868 + r 78 -8.6 -3.86031 | opp_overlap 49841 49838 49834, overlap 49838 49834 49830 CTACTTAAGTAATAA TATTTTGCGCTA TTTG TAGCACAAAATA TTATTACTTAATTAC TERM 115 49868 - 49841 - R 91 -10.8 -3.82604 | opp_overlap 49838 49834 49830 49841, overlap 49838 49834 CTACTTAAGTAATAA TATTTTGCGCTA TTTG TAGCACAAAATA TTATTACTTAATTAC TERM 116 50009 - 50051 + r 79 -5.1 -5.55769 | gap 1, opp_overlap 49999 50012 50013 50021, overlap 50010 50011 50013 ATAATCTATGTGACA TA-AGCTTTCAAACTAACAC ACGA GTGTTAGCTTGAAAGTGGTA TTTTTTATTGTGCCG TERM 117 50011 - 50048 + r 80 -9.3 -3.23281 | opp_overlap 50012 50013 50021, overlap 50010 50009 50013 AATCTATGTGACATA AGCTTTCAAACTAACAC ACGA GTGTTAGCTTGAAAGTG GTATTTTTTATTGTG TERM 118 50047 - 50012 - R 95 -12.8 -3.50572 | opp_overlap 50011 50010 50009 50013, overlap 50013 50021 ATCTATGTGACATAA GCTTTCAAACTAACAC ACGA GTGTTAGCTTGAAAGT GGTATTTTTTATTGT TERM 119 50013 - 50046 + r 100 -14.1 -3.14667 | opp_overlap 50012 50013 50021, overlap 50011 50010 50009 TCTATGTGACATAAG CTTTCAAACTAACAC ACGA GTGTTAGCTTGAAAG TGGTATTTTTTATTG TERM 120 50046 - 50013 - R 100 -16.3 -2.70022 | opp_overlap 50013 50011 50010 50009, overlap 50012 50021 TCTATGTGACATAAG CTTTCAAACTAACAC ACGA GTGTTAGCTTGAAAG TGGTATTTTTTATTG TERM 121 50038 - 50021 - R 75 -8.5 -3.58801 | opp_overlap 50013 50011 50010 50009, overlap 50013 50012 ACATAAGCTTTCAAA CTAACAC ACGA GTGTTAG CTTGAAAGTGGTATT BAPKO_2551 50427 - 50125 - | hypothetical protein BAPKO_2552 51127 - 51678 + | hypothetical protein BAPKO_2553 52424 - 51837 - | hypothetical protein TERM 122 55702 - 55654 - H 100 -7.8 -5.67063 | opp_overlap 55657, overlap 55657 GTTATTACAAAAAAA TGAGGGCTTAGCT-AGTTTCTCTT CTC AAAAGA-ACTAAGCTAAACCCTTA CATTACATTTCTTGA TERM 123 55699 - 55657 - H 83 -9.5 -3.5694 | opp_overlap 55657, overlap 55654 ATTACAAAAAAATGA GGGCTTAGCT-AGTTTCTCTT CTC AAAAGA-ACTAAGCTAAACCC TTACATTACATTTCT TERM 124 56595 - 56580 - g 79 -3.4 -5.61881 | opp_overlap 56580, overlap 56574 CCTTAAAAATAAAAA TTTATT TTTA AATAAA TCTTGCTTTAAAGAT BAPKO_2554 55948 - 57054 + | hypothetical protein BAPKO_2555 57064 - 57300 + | hypothetical protein BAPKO_2556 57293 - 58045 + | hypothetical protein BAPKO_2557 58340 - 58684 + | hypothetical protein BAPKO_2558 58870 - 59328 + | hypothetical protein SEQUENCE gi|117621706|ref|NC_008566.1| Borrelia afzelii PKo plasmid lp34, complete sequence (length 34273) BAPKO_3000 921 - 1748 + | hypothetical protein TERM 1 1772 - 1803 + T 74 -6 -4.66163 | opp_overlap 1776, overlap 1776 TAAAATACCATATGT AAAAGCATATCTTT TATT AAAGATATGCTTAA TTTTTAACTAAAGAT TERM 2 1799 - 1776 - T 100 -11.2 -4.2535 | opp_overlap 1772 1776 ATACCATATGTAAAA GCATATCTTT TATT AAAGATATGC TTAATTTTTAACTAA TERM 3 1776 - 1799 + T 95 -11.2 -3.83042 | opp_overlap 1776, overlap 1772 ATACCATATGTAAAA GCATATCTTT TATT AAAGATATGC TTAATTTTTAACTAA TERM 4 1970 - 2013 + T 100 -11.5 -4.3534 | opp_overlap 1971 1973 1978, overlap 1971 AAGAAGTATTGAATT ATATCAAAGTATAATTAAT TTTTAC ATTAATTATACTTTGATAA TTTTAATAATTAGCA TERM 5 1971 - 2012 + T 100 -15 -3.20722 | opp_overlap 1971 1973 1978, overlap 1970 AGAAGTATTGAATTA TATCAAAGTATAATTAAT TTTTAC ATTAATTATACTTTGATA ATTTTAATAATTAGC TERM 6 2012 - 1971 - T 100 -15 -2.77503 | opp_overlap 1971 1970, overlap 1973 1978 AGAAGTATTGAATTA TATCAAAGTATAATTAAT TTTTAC ATTAATTATACTTTGATA ATTTTAATAATTAGC TERM 7 2010 - 1973 - T 93 -13.2 -2.92936 | opp_overlap 1971 1970, overlap 1971 1978 AAGTATTGAATTATA TCAAAGTATAATTAAT TTTTAC ATTAATTATACTTTGA TAATTTTAATAATTA TERM 8 2005 - 1978 - T 71 -7.3 -3.889 | opp_overlap 1971 1970, overlap 1973 1971 TTGAATTATATCAAA GTATAATTAAT TTTTAC ATTAATTATAC TTTGATAATTTTAAT TERM 9 2324 - 2310 - T 70 -7.2 -3.73262 | opp_overlap 2310, overlap 2308 2316 2320 AAAAAATTAGAAATA TAGCAA GAA TTGCTA TTCTAAATAGAACAA BAPKO_3001 2664 - 2473 - | hypothetical protein BAPKO_3002 3391 - 3113 - | hypothetical protein BAPKO_3003 3806 - 3345 - | hypothetical protein BAPKO_3004 3912 - 3796 - | hypothetical protein TERM 10 3902 - 3892 - G 87 -2.6 -6.12458 | TAAAAAAAGAAAAAA TTTT ATT AAAA AATTATTCATAAAAT TERM 11 4211 - 4184 - R 76 -9.2 -2.76721 | opp_overlap 4182 4181 4176, overlap 4175 AGATAATGCTAATTA TCGCGCCATTAA TTTA TTAATGGCGCAT GTAACTTGCTTATTT BAPKO_3005 4783 - 4259 - | hypothetical protein BAPKO_3006 5473 - 5150 - | hypothetical protein BAPKO_3007 5908 - 5657 - | hypothetical protein TERM 12 6553 - 6499 - R 71 -8.5 -3.03771 | gap 2, opp_overlap 6497 6500, overlap 6504 6520 TTATACCTTTTAATA CTTAAGACTAAATGC-ATTAAA-TATT TAA AATAATCTAATAGCACTTAGTCTTAAA TATTAATTGAAATTC BAPKO_3008 7803 - 6922 - | hypothetical protein TERM 13 8046 - 8084 + H 72 -4.9 -4.98531 | opp_overlap 8045 8050, overlap 8047 8050 AACCACTATTAGAAG GTAATATTAATATGAAA AAAAA TTTCACATTAATATTAA TTTTTGGTTTAACCA TERM 14 8047 - 8083 + H 75 -8.4 -3.58396 | opp_overlap 8045 8050, overlap 8046 8050 ACCACTATTAGAAGG TAATATTAATATGAAA AAAAA TTTCACATTAATATTA ATTTTTGGTTTAACC TERM 15 8558 - 8503 - H 80 -8.2 -4.30987 | opp_overlap 8499 8507, overlap 8499 8515 8518 ACTTCCTACAATAAA TATATTATTTAATTATGTATATATTA TTTA TTATATTTAAATAATTAAATAATATA TACATATCAGAATTC BAPKO_3009 8618 - 8731 + | hypothetical protein BAPKO_3010 8863 - 9375 + | hypothetical protein TERM 16 9468 - 9441 - T 72 -3.6 -5.38047 | opp_overlap 9445, overlap 9443 GATTTATATAAAAAA CATATTATCTAC TTTA GTAAATAATATT GAAAATCTTATTTTT TERM 17 9466 - 9443 - T 70 -6.2 -4.31943 | opp_overlap 9445, overlap 9441 TTTATATAAAAAACA TATTATCTAC TTTA GTAAATAATA TTGAAAATCTTATTT TERM 18 9665 - 9685 + T 85 -6.1 -5.5454 | overlap 9669 TCCCACAAGCTTTAC TTTAGGCAG TTC CTGCCTTGA TTTTTATTTATTTAC TERM 19 9669 - 9681 + T 81 -9.1 -4.00347 | overlap 9665 ACAAGCTTTACTTTA GGCAG TTC CTGCC TTGATTTTTATTTAT BAPKO_3011 10143 - 9826 - | hypothetical protein TERM 20 11239 - 11221 - H 76 -2.4 -5.82036 | ATAACAAAGAAAAAA CTTAACAT CCA ATGCAAAG CTCAAACTATTTATA TERM 21 11357 - 11347 - H 73 -2.6 -5.74288 | ATAAATAATAAAAAA TATT GAA AATA AGGGTTGAAATTTTA TERM 22 11895 - 11878 - g 77 -2.1 -5.77856 | gap 1 AAGAAAGTAAAAAAA GA-AAAAG ATA CTTTTGTC ACTGAAAATGTCACT BAPKO_3012 11425 - 12402 + | hypothetical protein BAPKO_3013 12395 - 12874 + | hypothetical protein TERM 23 13107 - 13124 + G 80 -5.7 -5.1166 | overlap 13113 AAAACGCATTAACTT CATATTT TAAA AAATATG TTTTTAATTTTGATA BAPKO_3014 12956 - 13693 + | hypothetical protein BAPKO_3015 13740 - 14360 + | hypothetical protein TERM 24 14380 - 14415 + T 70 -7.6 -3.44146 | opp_overlap 14386, overlap 14384 TATTATGGTATTATT CAATTAGGTTGGGGAG TTAG TTTCCCATCCTATTTG TTCGTTATAAACGGA TERM 25 14384 - 14411 + T 75 -7 -4.36596 | opp_overlap 14386, overlap 14380 ATGGTATTATTCAAT TAGGTTGGGGAG TTAG TTTCCCATCCTA TTTGTTCGTTATAAA TERM 26 14434 - 14446 + T 80 -6.2 -5.25893 | GTTATAAACGGAACT GCCC ATATA GGGC TTTTTTGCTATGTAT TERM 27 15538 - 15564 + T 93 -12.6 -3.03085 | opp_overlap 15550, overlap 15535 15541 ATAGCAATAAGTGCG CAATCTTAATAA TCT TTATTAAGATTG TAATATTTTATATTT TERM 28 15541 - 15561 + T 75 -8.5 -3.6249 | opp_overlap 15550, overlap 15538 15535 GCAATAAGTGCGCAA TCTTAATAA TCT TTATTAAGA TTGTAATATTTTATA BAPKO_3016 16540 - 15785 - | hypothetical protein TERM 29 17194 - 17174 - H 70 -6.3 -4.2693 | overlap 17171 17175 AAGGTATTAAAATAA TTTTTCTCT TAA AAAGAAAAA ATAGGCATTAATCCT TERM 30 17736 - 17722 - H 95 -5.8 -6.10489 | opp_overlap 17722 17735, overlap 17735 AATTTTAAAAAAAAA TACTTT TGA AAAGTA TTTAGATATATAATA BAPKO_3017 17870 - 18028 + | hypothetical protein BAPKO_3018 18237 - 18410 + | hypothetical protein BAPKO_3019 18705 - 18905 + | hypothetical protein TERM 31 19502 - 19515 + T 80 -2.5 -6.06723 | opp_overlap 19502 TTTCTGATAATCTAA TAAAA TTTG TTTTA TTTTTTTTTGAAAAA BAPKO_3020 19679 - 19482 - | hypothetical protein BAPKO_3021 20007 - 19801 - | hypothetical protein TERM 32 20158 - 20182 + r 71 -6.7 -4.18259 | overlap 20155 20176 20177 TAAACCCCTTAATAT TTTTGAAATTT TTT AAATTTTAAAA TATTTTTTAAGCTTT BAPKO_3022 20780 - 20673 - | hypothetical protein BAPKO_3023 21080 - 20844 - | hypothetical protein TERM 33 21190 - 21219 + r 76 -8.1 -3.70068 | opp_overlap 21195 21203 CAGGGTTGATTTTTA CTTAACATATACA CATA TATATATGTTAAG TTTAAACTTGTAATG BAPKO_3024 22337 - 22176 - | hypothetical protein TERM 34 23197 - 23177 - R 80 -8.4 -4.26903 | opp_overlap 23181 TGTAGTTTAGTAAAA TGAATTCG TTGAT CGAATTCA TTAGGATTTATTTTA TERM 35 23587 - 23607 + r 81 -7.5 -4.4296 | overlap 23589 AAAATTGTATTTCAT TGTGGGGGG ATT CACCCCATA TTTTAATATATATTA TERM 36 23589 - 23605 + r 73 -7.9 -3.80595 | overlap 23587 AATTGTATTTCATTG TGGGGGG ATT CACCCCA TATTTTAATATATAT TERM 37 23960 - 23948 - R 72 -4.9 -5.04325 | TTTAAACTATAAAAA TTAGA ATA TCTAA GCCACCTTTAACTTC TERM 38 23999 - 24030 + r 89 -9 -4.55887 | opp_overlap 23999, overlap 23992 ATTGGCTTAATAAAA GACATAGATTTA ACTTAAAA TAAATCTATGTC TTTATCTTTTTAGAG TERM 39 24030 - 23999 - R 89 -9 -4.63486 | opp_overlap 23992 23999 ATTGGCTTAATAAAA GACATAGATTTA ACTTAAAA TAAATCTATGTC TTTATCTTTTTAGAG BAPKO_3025 25163 - 24087 - | hypothetical protein TERM 40 25327 - 25292 - RH 88 -8.6 -4.86621 | overlap 25293 ACGCTTAACTAAAAA TTTTGTTTTACTATTG TAGA CAATAATAAAACAAAT AATGAAAGATTAGCG TERM 41 25326 - 25293 - RH 95 -12.1 -3.5125 | overlap 25292 CGCTTAACTAAAAAT TTTGTTTTACTATTG TAGA CAATAATAAAACAAA TAATGAAAGATTAGC TERM 42 25435 - 25407 - RH 90 -10.6 -3.40788 | opp_overlap 25406, overlap 25417 ATCTAATCCAACCAA TGCAATATTATA AATAG TATAATATTGCA ATACTATTTAAACTA TERM 43 25486 - 25466 - RH 75 -7.1 -4.34859 | ATGAAAATATAGAAA TATTAATTT ATA AAATTAATA AAAAACATATATGGA TERM 44 25701 - 25688 - gR 84 -3.9 -5.80951 | ATTCAAAATAAAAAA TCTAT TTCA ATAGA AGAACATAGAAGAAA BAPKO_3027 26343 - 26254 - | hypothetical protein BAPKO_3026 25511 - 26326 + | hypothetical protein BAPKO_3028 26358 - 26489 + | hypothetical protein TERM 45 26615 - 26605 - g 71 -2.6 -5.46657 | opp_overlap 26598 CATTTCAATAAAAAA TTTA ATT TAAA TAAAAGGAAGACAAT BAPKO_3029 26500 - 26748 + | hypothetical protein TERM 46 27100 - 27087 - g 80 -3.9 -5.72207 | opp_overlap 27087 TGTAAACGAAAAAAA CAATA GATT TATTG CTTTCAGATGTTTTA BAPKO_3030 27001 - 27123 + | hypothetical protein TERM 47 28126 - 28143 + F 73 -7.1 -4.16284 | opp_overlap 28129, overlap 28129 TTGGTTTATTTGCAA TAAGCAT AATA ATGCTTA TTTATTGAAAGATAT TERM 48 28368 - 28339 - f 93 -9.5 -4.64766 | TTGAGAGTCTAAAAA GCTATTTCTATAA TCTT TTGTAGAAATAGC ATGCACTTATTTAGC TERM 49 28471 - 28497 + GF 80 -8.1 -4.10925 | opp_overlap 28471, overlap 28494 AATAAGTTTATATTA TGGCTTTACAG ATTTA TTGTAGAGCCA TTTTAAGGGCTGTGT TERM 50 28536 - 28526 - g 71 -2.6 -5.52384 | GTTTTATGAAAAAAA TAAT ATT ATTA ATCAATATTTTTCTA BAPKO_3031 28470 - 28571 + | hypothetical protein TERM 51 28975 - 28993 + GF 76 -9 -3.14344 | opp_overlap 28979, overlap 28979 CAATTTAGATTTGAA GCAATAAT GAG ATTATTGC TTGCTAAAAAAAATA TERM 52 29054 - 29064 + GF 73 -5.4 -4.66833 | opp_overlap 29052 AAAGGCTTAAAACTT GTCT CGA AGAC TTTTTAGCCTTGAGA BAPKO_3032 28516 - 29262 + | hypothetical protein BAPKO_3033 29847 - 31493 + | hypothetical protein BAPKO_3034 33085 - 32390 - | hypothetical protein TERM 53 33059 - 33070 + g 77 -3 -5.61596 | opp_overlap 33059 TAATGAAAATAACAA GAAA CATA TTTC TTTTTTTCTAAACAT TERM 54 33295 - 33320 + H 70 -6.3 -4.3453 | opp_overlap 33299 33301, overlap 33297 TATTAAATTTAGTTA GAGATAGTTTT TAGT AAAACTATCTA TTTATGTTTAAGATT TERM 55 33297 - 33318 + H 79 -8.9 -3.76586 | opp_overlap 33299 33301, overlap 33295 TTAAATTTAGTTAGA GATAGTTTT TAGT AAAACTATC TATTTATGTTTAAGA BAPKO_3035 33488 - 34153 + | hypothetical protein SEQUENCE gi|117621743|ref|NC_008567.1| Borrelia afzelii PKo plasmid lp32, complete sequence (length 32368) BAPKO_3500 1212 - 598 - | hypothetical protein BAPKO_3501 1714 - 1890 + | hypothetical protein BAPKO_3502 1863 - 2105 + | hypothetical protein BAPKO_3503 2402 - 2247 - | hypothetical protein TERM 1 2534 - 2559 + G 74 -6.3 -4.49377 | overlap 2535 AAAAAAGAACTTGAT TTGTCTTTAAA ATAT TTTAAAGACAC TTATTTTCTTATCAA TERM 2 2535 - 2558 + G 83 -9.8 -3.28542 | overlap 2534 AAAAAGAACTTGATT TGTCTTTAAA ATAT TTTAAAGACA CTTATTTTCTTATCA BAPKO_3504 2426 - 2809 + | hypothetical protein BAPKO_3505 2877 - 3035 + | hypothetical protein BAPKO_3506 3342 - 3674 + | hypothetical protein BAPKO_3507 3722 - 4102 + | hypothetical protein BAPKO_3508 4166 - 4321 + | hypothetical protein TERM 3 4418 - 4430 + F 72 -6.3 -4.5442 | TTAAAAGTTTTAATG GGTTT ATA AAACC TTTTGTAATTGCAAA BAPKO_3509 4522 - 4776 + | hypothetical protein TERM 4 4790 - 4774 - f 73 -4.5 -5.1971 | opp_overlap 4774 AGTAAAAACCAAAAA TAAAGAT TAA ATCCTTA ATTTTAATTTTTTTA BAPKO_3510 5340 - 5537 + | hypothetical protein TERM 5 5846 - 5817 - g 100 -6.7 -5.85244 | opp_overlap 5817 AAGCAAAATAAAAAA TTATAAACAACTT GAAA AATTTGTTTATAA TTTAATTAAAGAATA TERM 6 5817 - 5846 + G 70 -6.7 -3.90588 | opp_overlap 5817 AAGCAAAATAAAAAA TTATAAACAACTT GAAA AATTTGTTTATAA TTTAATTAAAGAATA TERM 7 6247 - 6277 + G 100 -8.6 -5.43487 | opp_overlap 6249 6271, overlap 6249 6271 TATTTTGATTATTAT AATTTTATTCTATT AGT AATAGAATAAAATC TTTTTTATGTAGTTT BAPKO_3511 5719 - 6273 + | hypothetical protein TERM 8 6275 - 6249 - f 93 -11.2 -3.44051 | opp_overlap 6247 6249 6271, overlap 6271 TTTTGATTATTATAA TTTTATTCTATT AGT AATAGAATAAAA TCTTTTTTATGTAGT TERM 9 6249 - 6275 + F 100 -11.2 -4.32846 | opp_overlap 6249 6271, overlap 6247 6271 TTTTGATTATTATAA TTTTATTCTATT AGT AATAGAATAAAA TCTTTTTTATGTAGT TERM 10 6290 - 6342 + F 100 -13.3 -4.90525 | opp_overlap 6337, overlap 6337 ATCTTTTTTATGTAG TTTTTATGCCTATTCAAAGAAAATA TGT TATTTTTTTTAAATAGACATAAAAA TTTTATTTAGAATTA BAPKO_3512 6397 - 6852 + | hypothetical protein BAPKO_3513 7298 - 7624 + | hypothetical protein BAPKO_3514 7706 - 8302 + | hypothetical protein BAPKO_3515 8374 - 8264 - | hypothetical protein BAPKO_3516 8394 - 8510 + | hypothetical protein BAPKO_3517 9468 - 9142 - | hypothetical protein TERM 11 9739 - 9725 - H 70 -3.6 -5.25699 | opp_overlap 9737 ATTATATAACAAAAA CTTCAT TTT ATAAAG CAATTTACCCATAAA TERM 12 9777 - 9739 - H 100 -12.1 -3.89524 | gap 1, opp_overlap 9737, overlap 9743 ACTTCATTTTATAAA GCAATTTACCCATAAAAT GTAC ACTTTATGGGTAAA-TGC ACATTATATATGTAT TERM 13 9774 - 9743 - H 95 -12.6 -3.61244 | opp_overlap 9737, overlap 9739 CATTTTATAAAGCAA TTTACCCATAAAAT GTAC ACTTTATGGGTAAA TGCACATTATATATG TERM 14 10526 - 10516 - g 76 -4 -5.41143 | opp_overlap 10516 TATTTTCTAAAAAAA CAAA TAC TTTG GTTTCAACTTATAAT TERM 15 11586 - 11607 + G 71 -7.3 -3.75738 | opp_overlap 11586 AGTAAATTTGAAAAA CCCGAAGAA GGCC TTCTTGGGG TTATTACTAATAATG TERM 16 11607 - 11586 - g 81 -7.3 -4.71482 | opp_overlap 11586 AGTAAATTTGAAAAA CCCGAAGAA GGCC TTCTTGGGG TTATTACTAATAATG TERM 17 12525 - 12515 - g 74 -4 -5.27476 | TGTAATAAAAGAAAA CTTT AAA AAAG ATGAAAAAGACAATA BAPKO_3518 9888 - 13100 + | hypothetical protein TERM 18 13209 - 13247 + F 100 -16.6 -3.75657 | opp_overlap 13217 13221, overlap 13203 13217 13221 13241 TTATAATTTCTTTTT TATTTAAATAAATAAGTT TAA AACTTATTTATTTAAATA TTATTACATATTTAA TERM 19 13239 - 13217 - f 83 -9.4 -3.64703 | opp_overlap 13203 13209 13217 13221, overlap 13221 TCTTTTTTATTTAAA TAAATAAGTT TAA AACTTATTTA TTTAAATATTATTAC TERM 20 13217 - 13239 + F 84 -9.4 -3.81258 | opp_overlap 13217 13221, overlap 13203 13209 13221 TCTTTTTTATTTAAA TAAATAAGTT TAA AACTTATTTA TTTAAATATTATTAC TERM 21 13513 - 13466 - f 90 -6.4 -5.67063 | opp_overlap 13469, overlap 13469 GTTATTACAAAAAAA TGAGGGCTTAGCTAGATTCTCT TGTT AAAGAACTAAGCTAAACCCTTA CATTACATTTTTTGC TERM 22 13510 - 13469 - f 75 -8.1 -3.5694 | opp_overlap 13469, overlap 13466 ATTACAAAAAAATGA GGGCTTAGCTAGATTCTCT TGTT AAAGAACTAAGCTAAACCC TTACATTACATTTTT BAPKO_3519 13803 - 14180 + | hypothetical protein TERM 23 14627 - 14615 - g 74 -4.9 -5.04325 | CTCAAATTAGAAAAA TCAAT TGA ATTGA AAAAAGAAAATTCAC TERM 24 14656 - 14638 - g 71 -2.5 -5.43553 | ATTGAAAAAAGAAAA TTCACAA AAAGA TTATGAA AATATAAAAATAAAC BAPKO_3520 14183 - 14701 + | hypothetical protein BAPKO_3521 14691 - 14912 + | hypothetical protein BAPKO_3522 14928 - 15380 + | hypothetical protein BAPKO_3523 15496 - 15654 + | hypothetical protein BAPKO_3524 15983 - 16051 + | hypothetical protein BAPKO_3525 16044 - 16397 + | hypothetical protein BAPKO_3527 17187 - 16984 - | hypothetical protein BAPKO_3526 16571 - 17122 + | hypothetical protein BAPKO_3528 17240 - 17329 + | hypothetical protein BAPKO_3529 17274 - 17435 + | hypothetical protein TERM 25 17748 - 17719 - T 91 -10.8 -3.81146 | opp_overlap 17725, overlap 17721 17725 TGTGGCAATTAATAA TATAAAGCCCCC AAATAA GGGGGCTTTAAA CATATTGCTATGATG TERM 26 17746 - 17721 - T 100 -13.4 -3.49048 | opp_overlap 17725, overlap 17719 17725 TGGCAATTAATAATA TAAAGCCCCC AAATAA GGGGGCTTTA AACATATTGCTATGA TERM 27 17725 - 17742 + T 89 -9.8 -3.61328 | opp_overlap 17725 17721 17719 AATTAATAATATAAA GCCCCC AAATAA GGGGGC TTTAAACATATTGCT TERM 28 17742 - 17725 - T 95 -9.8 -4.36774 | opp_overlap 17725, overlap 17721 17719 AATTAATAATATAAA GCCCCC AAATAA GGGGGC TTTAAACATATTGCT BAPKO_3530 17926 - 17756 - | hypothetical protein BAPKO_3531 18561 - 17878 - | hypothetical protein BAPKO_3532 18795 - 18637 - | hypothetical protein TERM 29 18857 - 18837 - H 93 -7.7 -5.22481 | opp_overlap 18837 18836, overlap 18839 TATAAATAAATAAAA TAGCAAAAA CTA TTTTTGCCA ATTTTTATAAAAAAA TERM 30 18855 - 18839 - H 80 -8.1 -4.20284 | opp_overlap 18837 18836, overlap 18837 TAAATAAATAAAATA GCAAAAA CTA TTTTTGC CAATTTTTATAAAAA TERM 31 18885 - 18873 - H 73 -3.5 -5.61596 | ATTTTTATAAAAAAA TTTTT GTA AAAAA ATGAGGGCTTAGCTA TERM 32 18935 - 18887 - H 81 -5.4 -5.40474 | opp_overlap 18890, overlap 18890 ATTTTTGTAAAAAAA TGAGGGCTTAGCTAGATTCTCT TTACC AAAGAACTAAGCTAAACCCTTA CATTACATTTTTTGC BAPKO_3533 19187 - 20278 + | hypothetical protein BAPKO_3534 20288 - 20845 + | hypothetical protein TERM 33 21000 - 21022 + G 95 -10.8 -3.92602 | opp_overlap 21000, overlap 20994 AATTGCAAATCAAAA CATTGATATT ATG AATATCAATG TTTATAGAGTGTTAA TERM 34 21022 - 21000 - g 100 -10.8 -4.564 | opp_overlap 20994 21000 AATTGCAAATCAAAA CATTGATATT ATG AATATCAATG TTTATAGAGTGTTAA BAPKO_3535 20821 - 21576 + | hypothetical protein TERM 35 21578 - 21597 + F 95 -12.2 -3.35679 | opp_overlap 21578 AATATGTTAAATAAA TCCGTACG GATC CGTACGGA TTATAAATAAAAGAG TERM 36 21597 - 21578 - f 100 -12.2 -4.4572 | opp_overlap 21578 AATATGTTAAATAAA TCCGTACG GATC CGTACGGA TTATAAATAAAAGAG BAPKO_3536 21620 - 22180 + | hypothetical protein BAPKO_3537 22193 - 22444 + | hypothetical protein TERM 37 22844 - 22860 + F 79 -8.1 -4.03645 | ATTGTAAAAAAGTTG GCAAAAA TAG TTTTTGC TTTGATATTGTTATT BAPKO_3538 22965 - 23087 + | hypothetical protein BAPKO_3539 23836 - 23555 - | hypothetical protein BAPKO_3540 24291 - 23848 - | hypothetical protein TERM 38 23888 - 23902 + g 75 -5.8 -4.77795 | overlap 23857 ACATCTTTAACTGTT TTTAGA TTA TCTAAA TTTCTCTTTTTTTTC BAPKO_3541 24521 - 24303 - | hypothetical protein TERM 39 25333 - 25368 + H 100 -13.6 -4.15453 | opp_overlap 25334, overlap 25334 25357 CTGTCATTTTTTAAG ACTTATAGATAAAGCT AACA AGCTTTATCTATAAGC TTTTCACATAGCTTA TERM 40 25334 - 25367 + H 100 -17.1 -3.0879 | opp_overlap 25334, overlap 25333 25357 TGTCATTTTTTAAGA CTTATAGATAAAGCT AACA AGCTTTATCTATAAG CTTTTCACATAGCTT TERM 41 25367 - 25334 - H 100 -17.1 -3.03124 | opp_overlap 25334 25333 25357 TGTCATTTTTTAAGA CTTATAGATAAAGCT AACA AGCTTTATCTATAAG CTTTTCACATAGCTT TERM 42 25357 - 25390 + H 75 -6.9 -4.53705 | opp_overlap 25334, overlap 25334 25333 TAAAGCTAACAAGCT TTATCTATAAGCTTT TCAC ATAGCTTAAAGATAA TTTTCTATAAAAGTT ospD 25555 - 26034 + | outer surface protein D BAPKO_3543 26148 - 26282 + | hypothetical protein TERM 43 26488 - 26466 - T 80 -9.2 -3.29273 | opp_overlap 26463 26466 26468, overlap 26464 GTTACTATTATAAGA GAGTCTTCTT TAA AAGAAGGCTC TAATTTAAATATATT TERM 44 26466 - 26488 + T 87 -11.4 -2.97058 | opp_overlap 26466 26464, overlap 26463 26468 GTTACTATTATAAGA GAGTCTTCTT TAA AAGAAGGCTC TAATTTAAATATATT TERM 45 26468 - 26486 + T 71 -8.2 -3.03038 | opp_overlap 26466 26464, overlap 26466 26463 TACTATTATAAGAGA GTCTTCTT TAA AAGAAGGC TCTAATTTAAATATA BAPKO_3544 26595 - 26530 - | hypothetical protein BAPKO_3545 26840 - 26598 - | hypothetical protein TERM 46 27064 - 27076 + r 88 -4.8 -5.82281 | opp_overlap 27064, overlap 27043 TCTTTCTTGGTAGAA GGGA AAGGA TCCC TTTTTTTATCTCTTT BAPKO_3546 27685 - 27551 - | hypothetical protein TERM 47 28347 - 28332 - g 70 -6.2 -4.20883 | overlap 28336 CAAAAATTTTGAAAA TGAATC TCAA GATTCA AAATCTTCAAATCAA TERM 48 28556 - 28544 - g 74 -4.9 -5.05577 | AAATGAAATTAAAAA GAATA ATT TATTC ATCCCTAAATTACGA TERM 49 28808 - 28797 - g 70 -3 -5.2894 | AAAGATAAAACAAAA CTTT GCTA AAAG CTTAAACGCAACTAT BAPKO_3547 28099 - 28935 + | hypothetical protein TERM 50 28980 - 28997 + T 90 -5.6 -5.84381 | opp_overlap 28980 TTGATATTTTAAAAA GAGAAG TTAATT CTTCTC TTTTTTTATTCATAC TERM 51 28997 - 28980 - T 71 -5.6 -4.64766 | opp_overlap 28980 TTGATATTTTAAAAA GAGAAG TTAATT CTTCTC TTTTTTTATTCATAC TERM 52 29056 - 29079 + T 80 -8.4 -4.25859 | opp_overlap 29061 TAGAAATTAAATTTT CAATATTAAA TTTA TTTAATATTG TTGTTTTAAATTAAA BAPKO_3548 29852 - 29331 - | hypothetical protein TERM 53 29776 - 29786 + g 71 -4 -5.05116 | ACACTTTTTATCTTA TCAA GTT TTGA TTTTGTTGTTTCTAA BAPKO_3549 30086 - 29895 - | hypothetical protein TERM 54 30114 - 30093 - H 76 -2.3 -5.87688 | overlap 30103 ACAAGCCAAAAAAAA GGAGAAA AAAGAGAA TTTCCCC CAGTTTGGACCAGAA TERM 55 30113 - 30103 - H 73 -3.2 -5.47914 | overlap 30093 AAAAAGGAGAAAAAA GAGA ATT TCCC CCAGTTTGGACCAGA BAPKO_3550 30228 - 30452 + | hypothetical protein BAPKO_3551 30445 - 30498 + | hypothetical protein BAPKO_3552 30521 - 30640 + | hypothetical protein BAPKO_3553 30809 - 31156 + | hypothetical protein TERM 56 31741 - 31731 - g 75 -5.4 -4.93296 | TTATTATCAGAAAAA CTCA AGG TGAG TAACAGAATAATAAC BAPKO_3554 31215 - 31841 + | hypothetical protein SEQUENCE gi|117621799|ref|NC_008568.1| Borrelia afzelii PKo plasmid lp28, complete sequence (length 28533) BAPKO_4500 542 - 351 - | hypothetical protein BAPKO_4501 926 - 699 - | hypothetical protein TERM 1 933 - 947 + r 70 -4.4 -4.92385 | AGCACTCATATGTTT TATTAT TTT ATAATA TTTTATTTAAGTGTA TERM 2 1408 - 1388 - R 74 -6.3 -4.71708 | opp_overlap 1406 AATAATAAATTAAAA CTAAAAAAT ATT ATTTCTTAG AAGTTTCTATATATT BAPKO_4502 1670 - 1398 - | hypothetical protein BAPKO_4503 2401 - 1661 - | hypothetical protein TERM 3 2768 - 2822 + H 76 -8.3 -3.79419 | gap 1, opp_overlap 2769 2773 2821, overlap 2766 2769 2809 2821 ATTATCTCAATATAA AC-CAACTAGTAGAGATTAAATTAAT TTTA ATTAATTTAATCTCTACTAGTGAAGC TCTTTTATAAAAGAG TERM 4 2769 - 2821 + H 88 -11.8 -2.8733 | gap 1, opp_overlap 2769 2773, overlap 2768 2766 2809 TTATCTCAATATAAA C-CAACTAGTAGAGATTAAATTAAT TTTA ATTAATTTAATCTCTACTAGTGAAG CTCTTTTATAAAAGA TERM 5 2819 - 2769 - H 100 -17.5 -4.20368 | gap 1, opp_overlap 2769 2768 2766 2809, overlap 2773 TTATCTCAATATAAA CCAACTAGTAGAGATTAAATTAAT TTTA ATTAATTTAATCTCTACTAGT-GA AGCTCTTTTATAAAA TERM 6 2816 - 2773 - H 100 -21.6 -3.69341 | opp_overlap 2769 2768 2766 2809, overlap 2769 CTCAATATAAACCAA CTAGTAGAGATTAAATTAAT TTTA ATTAATTTAATCTCTACTAG TGAAGCTCTTTTATA TERM 7 2838 - 2821 - H 71 -8.5 -3.09635 | opp_overlap 2768 2766 2821 2809 ATCTCTACTAGTGAA GCTCTTT TATA AAAGAGC TTCATAAATCAGATT TERM 8 2821 - 2838 + H 72 -8.5 -3.1876 | opp_overlap 2821, overlap 2768 2766 2809 ATCTCTACTAGTGAA GCTCTTT TATA AAAGAGC TTCATAAATCAGATT TERM 9 3714 - 3745 + H 75 -5.5 -4.91429 | gap 1, opp_overlap 3721, overlap 3718 AATCTAGACTTAGCT CTATTAATAAAAAC TTTTT GTTTTTATTA-TAG TTTTCTTTGACATTT TERM 10 4732 - 4706 - H 93 -7.5 -5.24551 | gap 1, opp_overlap 4706 TTAAATCAATAAAAA GTCC-TAAGAAA TTTC TTTCTTAAGGAC TTTTTATAAATGGTT TERM 11 4706 - 4732 + H 86 -7.5 -4.89339 | gap 1, opp_overlap 4706 TTAAATCAATAAAAA GTCC-TAAGAAA TTTC TTTCTTAAGGAC TTTTTATAAATGGTT TERM 12 4821 - 4798 - H 73 -2.6 -5.69976 | opp_overlap 4798 AGAAAAAAAACAAAA TTACAAAT GTTTTTTT ATTTGTAA TGTGTATTAATTGAT TERM 13 4824 - 4856 + H 100 -15.3 -3.85527 | opp_overlap 4832 4850 4853, overlap 4853 TTTTTATTTGTAATG TGTATTAATTGATAT ATA ATATCAATTAATACA TTATATTATATTGTA TERM 14 5267 - 5253 - g 75 -5.7 -4.64495 | ATGGAACAAAAATAA TTGCC GCACT GGCAA GACACTACGACGAAC TERM 15 5454 - 5437 - g 75 -5.5 -4.93177 | overlap 5438 TAAAAATGAAGAAAA GGCCCTT AATG AAGGGCA TATAAAGCTTTTAAA TERM 16 5453 - 5438 - g 80 -9 -3.53466 | overlap 5437 AAAAATGAAGAAAAG GCCCTT AATG AAGGGC ATATAAAGCTTTTAA TERM 17 5491 - 5471 - g 95 -11.3 -4.13343 | overlap 5461 ATAAAGCTTTTAAAA GCTATCAAT AAA ATTGATAGC CCAAAACAAAATCAC BAPKO_4504 4910 - 5569 + | hypothetical protein TERM 18 5560 - 5596 + F 89 -9.1 -4.57882 | opp_overlap 5565, overlap 5565 5594 TAATAGGAAAGAAGC CAAAATATAGCATTTTA AAT TAAAATGTTATATTTTA TTTATTATTATTAAA TERM 19 5591 - 5565 - f 75 -6.8 -4.39407 | opp_overlap 5560 5565 GGAAAGAAGCCAAAA TATAGCATTTTA AAT TAAAATGTTATA TTTTATTTATTATTA TERM 20 5565 - 5591 + F 100 -9 -5.18297 | opp_overlap 5565, overlap 5560 GGAAAGAAGCCAAAA TATAGCATTTTA AAT TAAAATGTTATA TTTTATTTATTATTA TERM 21 5859 - 5828 - f 75 -5.5 -4.95957 | gap 1, opp_overlap 5828 5827, overlap 5817 5812 5832 TAAATTAACTAAAAA TTA-ATTTCCTATT TACTT AATAGGAAATATAA ATTTTAATAAGATGA TERM 22 5854 - 5832 - f 75 -7.9 -3.88182 | opp_overlap 5828 5827, overlap 5812 5828 TTAACTAAAAATTAA TTTCCTATT TACTT AATAGGAAA TATAAATTTTAATAA TERM 23 6013 - 6041 + F 90 -11.3 -3.22841 | opp_overlap 6003 6007 6006 6015, overlap 6008 6006 6037 AAAAATAATTGGTAA TACTCAATTATTG AAC TAATAATTGAGTA TTAAATATTCTCCTT TERM 24 6039 - 6015 - f 74 -8.8 -3.08349 | opp_overlap 6013 6008 6006 6037, overlap 6003 6007 6006 AAATAATTGGTAATA CTCAATTATT GAACT AATAATTGAG TATTAAATATTCTCC TERM 25 6119 - 6136 + F 83 -6.3 -5.38839 | opp_overlap 6119 ATTCTTTTAAATAAA CCTCTTA TTTT TAAGGGG TTTTCTTTTTATATA BAPKO_4505 6396 - 7079 + | hypothetical protein BAPKO_4506 7809 - 7231 - | hypothetical protein TERM 26 7995 - 7977 - H 78 -6.1 -4.97312 | AAAACCAATTAAAAA GATTAGA TTATG TCTAATC CCAATTTATATAAAT BAPKO_4507 7986 - 8990 + | hypothetical protein BAPKO_4508 9140 - 9466 + | hypothetical protein TERM 27 10374 - 10364 - gT 71 -2.6 -5.38549 | TTCAAATAACAAAAA TATT AAA AATA AGCAACAATGAAAAA BAPKO_4510 10833 - 10600 - | hypothetical protein BAPKO_4509 9622 - 10728 + | hypothetical protein TERM 28 11749 - 11767 + G 100 -9 -5.24531 | TATTGTAGATTTTGA TACTTTAC TTG GTAAAGTA TTTTTTATAAGAACT BAPKO_4511 11681 - 11857 + | hypothetical protein TERM 29 12461 - 12434 - g 76 -8.7 -3.57462 | TATTTCAGGCTCAAA TTCTATTTCAT ATACTG ATGAAATAGAA GAAGAAGATTATGAT BAPKO_4512 11916 - 12974 + | hypothetical protein TERM 30 12995 - 13032 + F 93 -13 -3.05384 | opp_overlap 13002, overlap 13002 GATAATTAGTTTATT TTTTAAACAGGCTACA TATTAT TGTAGCCTGTTTAACA TTAAATAAAAAAAGC TERM 31 13025 - 13002 - f 95 -11.1 -3.55563 | opp_overlap 12995 13002 AGTTTATTTTTTAAA CAGGCTACA TATTAT TGTAGCCTG TTTAACATTAAATAA TERM 32 13002 - 13025 + F 95 -11.1 -3.6715 | opp_overlap 13002, overlap 12995 AGTTTATTTTTTAAA CAGGCTACA TATTAT TGTAGCCTG TTTAACATTAAATAA BAPKO_4513 13919 - 14218 + | hypothetical protein TERM 33 14466 - 14521 + T 87 -6.4 -5.27335 | opp_overlap 14473, overlap 14469 CCCAATAAATCAATT TGGCAAACTTATTTCACCCAAAGTTT ATGT AAATTACAGGTGAAATAAGTTTGTAA TTTTTATTTAAAAGG TERM 34 14469 - 14518 + T 90 -10.3 -3.45131 | opp_overlap 14473, overlap 14466 AATAAATCAATTTGG CAAACTTATTTCACCCAAAGTTT ATGT AAATTACAGGTGAAATAAGTTTG TAATTTTTATTTAAA TERM 35 14514 - 14473 - T 72 -7.5 -3.58305 | opp_overlap 14469 14466 AATCAATTTGGCAAA CTTATTTCACCCAAAGTTT ATGT AAATTACAGGTGAAATAAG TTTGTAATTTTTATT BAPKO_4514 15385 - 14600 - | hypothetical protein TERM 36 15788 - 15764 - R 85 -10.3 -3.08237 | overlap 15759 15769 15779 TAAATAATAATGATA TTCAATAAAAT TAA ATTTTATTGAA CAAAAGAATTATAAG TERM 37 16050 - 16078 + r 78 -6.7 -4.8083 | opp_overlap 16052, overlap 16045 16051 16052 GGTATTAAATGTATT AAGGATACTGCTT CTA GAGCAGTATCCAA TTTTTAATAATCTTG TERM 38 16051 - 16077 + r 87 -10.2 -3.47413 | opp_overlap 16052, overlap 16045 16050 16052 GTATTAAATGTATTA AGGATACTGCTT CTA GAGCAGTATCCA ATTTTTAATAATCTT TERM 39 16052 - 16076 + r 100 -13.7 -2.67364 | opp_overlap 16052, overlap 16045 16051 16050 TATTAAATGTATTAA GGATACTGCTT CTA GAGCAGTATCC AATTTTTAATAATCT TERM 40 16076 - 16052 - R 95 -13 -3.25802 | opp_overlap 16045 16051 16050 16052 TATTAAATGTATTAA GGATACTGCT TCTAG AGCAGTATCC AATTTTTAATAATCT TERM 41 16340 - 16321 - R 74 -5 -5.10601 | opp_overlap 16321 16328 ATAAAATTATAAAAA GCTTTCTT TTAA AGGAAAGC TTTAAATTTAAATAT TERM 42 16321 - 16340 + r 71 -7.2 -3.86311 | opp_overlap 16321, overlap 16328 ATAAAATTATAAAAA GCTTTCTT TTAA AGGAAAGC TTTAAATTTAAATAT BAPKO_4515 17338 - 16400 - | hypothetical protein TERM 43 16431 - 16471 + g 72 -7.2 -3.94724 | gap 1, opp_overlap 16426, overlap 16456 TGAAAGCAGATTTTG CTTCTTGAAGAAGCTAGAA AAGA TTTTA-CTTCTTGAAGAAG TTGTTCTATCCTTTC TERM 44 17313 - 17327 + g 86 -4.4 -5.92337 | ACTAATATTAATATG TATTTT GCC AAAATA TTTTTTTTCATATCT BAPKO_4516 17467 - 17592 + | hypothetical protein BAPKO_4517 18586 - 18068 - | hypothetical protein BAPKO_4518 18866 - 18955 + | hypothetical protein BAPKO_4519 19045 - 19212 + | hypothetical protein BAPKO_4520 19406 - 20053 + | hypothetical protein TERM 45 20140 - 20172 + T 100 -16.7 -2.55267 | opp_overlap 20140, overlap 20148 TAAACTAGTAATAAA TTTTAAAAGCTAACA TTA TGTTAGCTTTTAAAA TAGCTTAAAATATTT TERM 46 20172 - 20140 - T 100 -16.7 -4.30833 | opp_overlap 20140 20148 TAAACTAGTAATAAA TTTTAAAAGCTAACA TTA TGTTAGCTTTTAAAA TAGCTTAAAATATTT TERM 47 20148 - 20164 + T 86 -9.5 -4.15453 | opp_overlap 20140, overlap 20140 TAATAAATTTTAAAA GCTAACA TTA TGTTAGC TTTTAAAATAGCTTA BAPKO_4521 20570 - 20238 - | hypothetical protein TERM 48 20856 - 20820 - H 93 -9.8 -4.15832 | gap 2, opp_overlap 20819 20821 20834, overlap 20822 AGTAATCACAAAGAA TACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-A TGAATTTGTAACGTA TERM 49 20821 - 20856 + H 83 -11.4 -2.7083 | gap 1, opp_overlap 20820 20822, overlap 20819 20834 GTAATCACAAAGAAT ACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAGA TGAATTTGTAACGTA TERM 50 20855 - 20822 - H 100 -14.9 -3.66489 | gap 1, opp_overlap 20821 20819 20834, overlap 20820 TAATCACAAAGAATA CTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG ATGAATTTGTAACGT TERM 51 21276 - 21261 - g 74 -2.6 -5.71638 | overlap 21262 TAATAATCAAAAAAA CTCTAT AAGA ATAGAA AATGATTATATAAAG BAPKO_4522 20905 - 22041 + | hypothetical protein TERM 52 22042 - 22022 - T 83 -6.1 -5.39681 | overlap 22026 ATAAGGAAATAAAAA CTAAGGCAG GAA CTGCCTGAA GTAAAGCTTGTGGAC TERM 53 22038 - 22026 - T 81 -9.1 -3.98991 | overlap 22022 GGAAATAAAAACTAA GGCAG GAA CTGCC TGAAGTAAAGCTTGT TERM 54 22121 - 22150 + T 72 -8.9 -2.75064 | gap 1, opp_overlap 22120 22121 22148 GGATGAAACAAGAAG CTATTTCTATAATC TTT GATT-TAGAAATAG TAGTTCACTACCCAA TERM 55 22150 - 22121 - T 74 -8.9 -3.06839 | gap 1, opp_overlap 22121, overlap 22120 22148 GGATGAAACAAGAAG CTATTTCTATAATC TTT GATT-TAGAAATAG TAGTTCACTACCCAA BAPKO_4523 22345 - 22127 - | hypothetical protein BAPKO_4524 22457 - 22338 - | hypothetical protein TERM 56 22385 - 22367 - G 80 -5.4 -5.27335 | TTCTCCAAACAAAAA TACAACTT ATA AAATTGTA ACACTCATTATAAAA TERM 57 22837 - 22878 + G 76 -7.1 -4.27774 | gap 1, opp_overlap 22834 22832 22844, overlap 22834 22838 22841 AAAAAAATGACATTC T-TAACAAGAATTATTAT AAATAGA ATAATAATTCTTGTTATA TTTCTAATTTTTGAT TERM 58 22838 - 22876 + G 95 -12.2 -3.71907 | opp_overlap 22834 22832 22844, overlap 22834 22837 22841 AAAAAATGACATTCT TAACAAGAATTATTAT AAATAGA ATAATAATTCTTGTTA TATTTCTAATTTTTG TERM 59 22841 - 22873 + G 87 -9.5 -3.94393 | opp_overlap 22834 22832 22844, overlap 22834 22838 22837 AAATGACATTCTTAA CAAGAATTATTAT AAATAGA ATAATAATTCTTG TTATATTTCTAATTT BAPKO_4525 22828 - 22908 + | hypothetical protein BAPKO_4526 23469 - 22903 - | hypothetical protein BAPKO_4527 23708 - 23475 - | hypothetical protein BAPKO_4528 23953 - 24729 + | hypothetical protein BAPKO_4529 24757 - 25074 + | hypothetical protein BAPKO_4530 26446 - 25091 - | hypothetical protein BAPKO_4531 27755 - 26427 - | hypothetical protein TERM 60 27000 - 27024 + g 81 -8.1 -4.27463 | AAAATTTTTGTTATT TTTTATAGAAA AGT TTTCTATAGAA TTCTTTATCTTATTA BAPKO_4532 28156 - 27974 - | hypothetical protein TERM 61 28339 - 28370 + r 93 -7.4 -5.68438 | opp_overlap 28344, overlap 28341 CTATTGTTTTGGTAT TAGAACAACCCT TTTACATC AGGGTTGTTCTC TTTTTTGTTTGATAA TERM 62 28341 - 28368 + r 100 -10 -4.47052 | opp_overlap 28344, overlap 28339 ATTGTTTTGGTATTA GAACAACCCT TTTACATC AGGGTTGTTC TCTTTTTTGTTTGAT BAPKO_4533 28526 - 28389 - | hypothetical protein SEQUENCE gi|117621834|ref|NC_008569.1| Borrelia afzelii PKo plasmid lp25, complete sequence (length 24794) BAPKO_5500 1254 - 685 - | hypothetical protein BAPKO_5501 2727 - 1351 - | hypothetical protein TERM 1 1790 - 1804 + g 74 -8.6 -3.29937 | overlap 1788 1785 TTCATTTTTCTAGCT TGAGCT TTT AGCTCA TGTATTTGAATATTA BAPKO_5502 3385 - 2747 - | hypothetical protein TERM 2 2782 - 2829 + g 77 -5 -5.33921 | gap 1, overlap 2795 TGCGTACACGCAGAT GGGGTGGGGGATT-GATCAGATT ACC AATTTGATCTAGTCTTTCTTCCC TTTTTTGCTTAATTT BAPKO_5503 3903 - 3469 - | hypothetical protein TERM 3 3784 - 3805 + g 91 -2.3 -6.37666 | overlap 3785 TTCTGGTCCCAACTC GGGGAAA TTCTCTTT TTTCTCC TTTTTTTTGTTTTGT TERM 4 3785 - 3795 + g 73 -3.2 -5.47914 | overlap 3784 TCTGGTCCCAACTCG GGGA AAT TCTC TTTTTTCTCCTTTTT BAPKO_5504 5292 - 3928 - | hypothetical protein TERM 5 4380 - 4369 - G 72 -5.8 -4.58283 | opp_overlap 4368 GAATTGCTCTAAAAA GTGC TCAA GCAC ATACTTCAACTTGCT TERM 6 5333 - 5359 + H 83 -5.9 -5.40625 | ATCGTTTGATGGTAA GTCTAGTTGTG CTAAC TGCAGCTAGAC TTTTTTGTCTCCTCT TERM 7 5582 - 5611 + H 72 -3.6 -5.40072 | CCTTGCTGGGGGTAA GCCATATTGC ACCAGGCACC GCGGTATGGC TTTTTTTAGAACGGA BAPKO_5505 5658 - 6032 + | hypothetical protein BAPKO_5506 6025 - 6471 + | hypothetical protein TERM 8 6569 - 6557 - g 70 -4.9 -4.68209 | opp_overlap 6557 ACTCTAACAAACAAA TTTGA TGA TCAAA ATTTAGTTCTTGATG BAPKO_5507 6497 - 6829 + | hypothetical protein TERM 9 6984 - 7037 + G 78 -8.5 -3.7511 | gap 1, opp_overlap 6984 6986 ACGAAACTGAAGAAA TATCAAGTGCCAAAGAAGATACAA CAGAAGA TTGTA-CTTCTTTGGGGCTTGACA TTGTATTCTACACCG TERM 10 7037 - 6984 - g 86 -9.2 -4.29929 | gap 1, opp_overlap 6984, overlap 6986 ACGAAACTGAAGAAA TATCAAGTGCCAAAGAAGATACAAC AGAAG ATTGTA-CTTCTTTGGGGCTTGACA TTGTATTCTACACCG TERM 11 7035 - 6986 - g 86 -9.6 -3.74101 | gap 1, opp_overlap 6984, overlap 6984 GAAACTGAAGAAATA TCAAGTGCCAAAGAAGATACAAC AGAAG ATTGTA-CTTCTTTGGGGCTTGA CATTGTATTCTACAC TERM 12 7175 - 7186 + G 71 -4.4 -4.86939 | overlap 7178 TTCAGTGTAAGTGGA CTCT CAGA AGAG TTTTTGAATTTCTTA TERM 13 7726 - 7710 - g 76 -6.6 -4.62336 | ACGTTATGTCAAAAA GTAGCT CCAGT AGCTAC GATTCAACTAAAGTT TERM 14 8629 - 8609 - g 78 -9.1 -3.26546 | CCAGAAACTTACCAA TTTAAAGCC ACC GGCTTCAAA GACGAAGACACTATA BAPKO_5508 6842 - 9544 + | hypothetical protein TERM 15 9591 - 9581 - g 77 -3.2 -5.62219 | AAGATATCAAAAAAA GACT TCA AGCC GACAATATCAAATTC BAPKO_5509 9544 - 10374 + | hypothetical protein BAPKO_5510 10383 - 10721 + | hypothetical protein TERM 16 10775 - 10765 - g 74 -4 -5.22104 | GAAAAAATAAGAAAA TCAA TAT TTGA TAATGCAAAAACCTT BAPKO_5511 10738 - 11130 + | hypothetical protein BAPKO_5512 11127 - 11570 + | hypothetical protein BAPKO_5513 11560 - 12378 + | hypothetical protein BAPKO_5514 12399 - 12827 + | hypothetical protein BAPKO_5515 12917 - 13114 + | hypothetical protein TERM 17 13209 - 13199 - g 93 -5.4 -5.82388 | AAACTCTAAAAAAAA TTGC CGA GCAA AAATTTGCAAGTCTA TERM 18 14315 - 14302 - g 73 -5.3 -4.69027 | AAATTGATCCAAAAA GTCAT AGAT ATGAC AGTTAAATTGTACGA BAPKO_5516 13111 - 14988 + | hypothetical protein TERM 19 15020 - 15007 - g 70 -6.7 -3.93256 | TAGAGTGGGAAACAA TGCTG CTTC CAGCA AAAGAAAGAGCAAGT BAPKO_5517 15006 - 15458 + | hypothetical protein BAPKO_5518 15487 - 15564 + | hypothetical protein BAPKO_5519 15565 - 16116 + | hypothetical protein TERM 20 16347 - 16311 - f 95 -12 -3.3972 | gap 1, opp_overlap 16311 16313, overlap 16342 GTATAAAATTAGTAA TGTGAATAGTT-CATAA TTTA TTATGTAACTATTCACA CCTTGAGAAAGACCG TERM 21 16352 - 16387 + F 100 -14.2 -3.77808 | opp_overlap 16342 16358, overlap 16358 AACTATTCACACCTT GAGAAAGACCGTTAGC TTTT GCTGATGGTCTTTTTC TTATCTTCTACTAAG TERM 22 16358 - 16381 + F 100 -9.6 -5.31072 | opp_overlap 16358, overlap 16352 TCACACCTTGAGAAA GACCGTTAGC TTTT GCTGATGGTC TTTTTCTTATCTTCT BAPKO_5520 16514 - 17086 + | hypothetical protein BAPKO_5521 17236 - 17775 + | hypothetical protein BAPKO_5522 17751 - 18512 + | hypothetical protein TERM 23 18522 - 18547 + F 100 -14.9 -2.98282 | opp_overlap 18513, overlap 18516 18510 18509 ATTTAATTTTTTTAG CCATTTGTTCG CAAG CGAACAAATGG TATATAATACTTAGT BAPKO_5523 18584 - 19141 + | hypothetical protein TERM 24 19233 - 19280 + T 84 -9.4 -3.80461 | opp_overlap 19225 19233, overlap 19225 19220 TTTAAAACCTAGTAA TAGGTTTTGTTGATTGCTTTTA AATT TTAAAGTTCTCAACAAAACCTA TTTAGTAGTAAATTA BAPKO_5524 19838 - 19296 - | hypothetical protein BAPKO_5525 20411 - 19869 - | hypothetical protein TERM 25 20422 - 20384 - G 89 -7.8 -5.02715 | opp_overlap 20388 20390 20394 20396, overlap 20385 20388 ATAGCAAACTAAAAA TTAATATTAATGTGAAAA TTT TTTTCATATTAATATTAC CTCCTAATAATTAAG TERM 26 20421 - 20385 - G 93 -11.3 -3.60002 | opp_overlap 20388 20390 20394 20396, overlap 20384 20388 TAGCAAACTAAAAAT TAATATTAATGTGAAAA TTT TTTTCATATTAATATTA CCTCCTAATAATTAA TERM 27 20388 - 20418 + g 88 -10.8 -3.10894 | opp_overlap 20385 20384 20388, overlap 20390 20394 20396 CAAACTAAAAATTAA TATTAATGTGAAAA TTT TTTTCATATTAATA TTACCTCCTAATAAT TERM 28 20418 - 20388 - G 80 -8.6 -3.90592 | opp_overlap 20388 20390 20394 20396, overlap 20385 20384 CAAACTAAAAATTAA TATTAATGTGAAAA TTT TTTTCATATTAATA TTACCTCCTAATAAT TERM 29 20390 - 20416 + g 76 -9 -3.11272 | opp_overlap 20388 20385 20384, overlap 20388 20394 20396 AACTAAAAATTAATA TTAATGTGAAAA TTT TTTTCATATTAA TATTACCTCCTAATA TERM 30 20784 - 20802 + GH 76 -4 -5.49234 | overlap 20795 TCTTGAAGAATCAAT TATTTTTA TTT TAAGAATA TTTTTTATTGCATAT TERM 31 20879 - 20891 + GH 95 -4.9 -5.9873 | TTTACAGATCTTCAA TATCT TTT AGATA TTTTTTTTATGATGA TERM 32 20951 - 20975 + GH 89 -10.1 -3.52192 | opp_overlap 20949 AAATAATAAATATTT TCACTACCTTT CAT AAAGGTAGCGA TTCTGTAGAATTCCC TERM 33 21372 - 21354 - gH 86 -6 -5.42975 | TGACAGAAAGAAAAA TGGAGCAT ATT ATACCCCA GAAGATTTGACGGAC BAPKO_5526 20545 - 22722 + | hypothetical protein TERM 34 23616 - 23603 - gT 76 -3.9 -5.48028 | opp_overlap 23603 CAAAGAAAAAGAAAA TGAAA ATAA TTTCA TTGTAGCCAGTCTTT BAPKO_5527 22650 - 23780 + | hypothetical protein TERM 35 23823 - 23781 - T 90 -10.3 -3.32844 | opp_overlap 23776, overlap 23783 CGTTGGATTGCATAA TA-GATCCCAATTGCCAGATT TTG AAT-TGACAATTGGGATCGTA AAGTTAGTATTGCAC TERM 36 23820 - 23783 - T 100 -14.5 -3.23393 | gap 1, opp_overlap 23776, overlap 23781 TTGGATTGCATAATA GATCCCAATTGCCAGATT TTG AAT-TGACAATTGGGATC GTAAAGTTAGTATTG BAPKO_5528 24347 - 23844 - | hypothetical protein TERM 37 24358 - 24320 - G 88 -7.8 -4.98531 | opp_overlap 24324 24326 24330 24332, overlap 24321 24324 TTGTTAAACTAAAAA TTAATATTAATGTGAAAA TTT TTTTCATATTAATATTAC CTCCTAATAATTAAG TERM 38 24357 - 24321 - G 93 -11.3 -3.58396 | opp_overlap 24324 24326 24330 24332, overlap 24320 24324 TGTTAAACTAAAAAT TAATATTAATGTGAAAA TTT TTTTCATATTAATATTA CCTCCTAATAATTAA TERM 39 24324 - 24354 + g 88 -10.8 -3.10894 | opp_overlap 24321 24320 24324, overlap 24326 24330 24332 TAAACTAAAAATTAA TATTAATGTGAAAA TTT TTTTCATATTAATA TTACCTCCTAATAAT TERM 40 24354 - 24324 - G 80 -8.6 -3.90592 | opp_overlap 24324 24326 24330 24332, overlap 24321 24320 TAAACTAAAAATTAA TATTAATGTGAAAA TTT TTTTCATATTAATA TTACCTCCTAATAAT TERM 41 24326 - 24352 + g 76 -9 -3.11272 | opp_overlap 24324 24321 24320, overlap 24324 24330 24332 AACTAAAAATTAATA TTAATGTGAAAA TTT TTTTCATATTAA TATTACCTCCTAATA