TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.710815 %AT, 1261974 nt, 7095 terms. Intergenic: 0.763065 %AT, H2T: 213531 nt, 1392 terms; T2T: 64156 nt, 1115 terms; H2H: 62343 nt, 1156 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|11497060|ref|NC_000948.1| Borrelia burgdorferi B31 plasmid cp32-1, complete sequence (length 30750) BB_P01 66 - 1289 + | hypothetical protein BB_P02 1306 - 1998 + | hypothetical protein BB_P03 2011 - 2568 + | hypothetical protein TERM 1 3142 - 3126 - g 72 -6.7 -4.16904 | opp_overlap 3129, overlap 3129 AATACTAGACATAAA TAATAAC GGT GTTATTA TCAAGGCCGGAGGTG BB_P04 2575 - 3339 + | hypothetical protein BB_P05 3369 - 3941 + | hypothetical protein BB_P06 3948 - 4922 + | hypothetical protein BB_P07 4936 - 5397 + | hypothetical protein BB_P08 5379 - 5780 + | hypothetical protein BB_P09 5768 - 6157 + | hypothetical protein BB_P10 6154 - 6720 + | hypothetical protein TERM 2 7244 - 7225 - g 85 -7.2 -4.94811 | overlap 7227 TGAAAAAGAAAGAAA TATTGCTG TTTA CAGCAACA ATAAAGACAATTTAC TERM 3 7242 - 7227 - g 75 -7.6 -4.05342 | overlap 7225 AAAAAGAAAGAAATA TTGCTG TTTA CAGCAA CAATAAAGACAATTT BB_P11 6701 - 7813 + | hypothetical protein BB_P12 7828 - 8256 + | hypothetical protein BB_P13 8272 - 8727 + | hypothetical protein BB_P14 8724 - 8960 + | hypothetical protein BB_P15 8968 - 10242 + | hypothetical protein BB_P16 10265 - 10948 + | hypothetical protein BB_P17 10952 - 11902 + | hypothetical protein BB_P18 11920 - 12465 + | hypothetical protein BB_P19 12495 - 12827 + | hypothetical protein TERM 4 13210 - 13192 - g 76 -9 -3.04267 | opp_overlap 13192, overlap 13191 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAATATTAATAGT TERM 5 13192 - 13210 + G 74 -9 -2.93616 | opp_overlap 13191 13192 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAATATTAATAGT BB_P20 12824 - 13699 + | hypothetical protein BB_P21 13709 - 14314 + | hypothetical protein BB_P22 14324 - 15139 + | hypothetical protein blyA 15215 - 15418 + | pore-forming hemolysin blyB 15422 - 15769 + | hemolysin accessory protein BB_P25 15759 - 16094 + | hypothetical protein BB_P26 16081 - 16440 + | hypothetical protein TERM 6 16546 - 16511 - T 91 -7.2 -5.62288 | gap 1, opp_overlap 16511 GCAACAAAAGAAAAA TCTAGATATTAGAT-TG ACG CAGATTTAATATCTAGA TTTTAACATTTTCAA TERM 7 16511 - 16546 + T 89 -9.4 -4.28049 | gap 1, opp_overlap 16511 GCAACAAAAGAAAAA TCTAGATATTAGAT-TG ACG CAGATTTAATATCTAGA TTTTAACATTTTCAA revA 17060 - 16578 - | rev protein mlpA 17232 - 17678 + | lipoprotein TERM 8 17706 - 17686 - T 90 -11.1 -3.1855 | opp_overlap 17688, overlap 17688 GGTCCTAATAGTTAA CAGCCCCCA TAT TGGGGGCTT TAATCTTGCTATGCT TERM 9 17688 - 17704 + T 100 -13.7 -3.96093 | opp_overlap 17686 17688 TCCTAATAGTTAACA GCCCCCA TAT TGGGGGC TTTAATCTTGCTATG TERM 10 17704 - 17688 - T 100 -13.7 -3.15503 | opp_overlap 17688, overlap 17686 TCCTAATAGTTAACA GCCCCCA TAT TGGGGGC TTTAATCTTGCTATG BB_P29 18728 - 17715 - | hypothetical protein TERM 11 18784 - 18768 - H 71 -8.1 -3.10869 | opp_overlap 18766 18765, overlap 18766 18764 18778 AAAAATAAGTATATA GCAAAAA CTA TTTTTGC CAACTTTTTTACAAA TERM 12 18867 - 18816 - H 79 -3.8 -5.63504 | overlap 18818 AATTTTACAAAAAAA TAGGGCTTAGCTAAATTCTCTATT ATCT ACTAAAGAAATTAGTTAAGCCCGT GCTAAAAATTTTTTT TERM 13 18865 - 18818 - H 100 -10.8 -4.45201 | overlap 18816 TTTTACAAAAAAATA GGGCTTAGCTAAATTCTCTATT ATCT ACTAAAGAAATTAGTTAAGCCC GTGCTAAAAATTTTT TERM 14 19464 - 19483 + G 79 -9.4 -3.18429 | opp_overlap 19464 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 15 19483 - 19464 - g 100 -9.4 -5.4148 | opp_overlap 19464 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 16 19778 - 19756 - g 90 -9.3 -4.54343 | ACAAATTTAAATAAA TCTTGCTTT AAAGA AAAGCAAGA GAAACTAAAGAAAAT BB_P30 19114 - 20214 + | hypothetical protein BB_P31 20224 - 20790 + | hypothetical protein BB_P32 20766 - 21506 + | plasmid partition protein, putative TERM 17 21509 - 21529 + F 70 -3.3 -5.40072 | overlap 21513 TTTGAAAATATGAAA TTTGTCCGA TAG TTGGATGAA TTTTTTTAACAAAAA TERM 18 22053 - 22071 + G 76 -9 -2.97297 | opp_overlap 22049 22053 22064, overlap 22052 22064 TTTTTATTAGATGAA CTTTTTGA AAG TCAAAAAG ATTTGATTAATAAAT TERM 19 22071 - 22053 - g 78 -9 -3.29471 | opp_overlap 22053 22052 22064, overlap 22049 22064 TTTTTATTAGATGAA CTTTTTGA AAG TCAAAAAG ATTTGATTAATAAAT BB_P33 21510 - 22118 + | hypothetical protein bdrA 22131 - 22763 + | BdrA TERM 20 22949 - 22986 + F 78 -5.8 -5.14682 | opp_overlap 22938 22981, overlap 22981 TAAGCTAAGCCCGCG GCTTTATTAAGCTCTT TAACAT GAGAATTTAATAAAGC TTTTATTTATTATAA TERM 21 23098 - 23143 + F 100 -14.3 -5.63504 | opp_overlap 23089 23097 23098, overlap 23089 23088 23100 AAAAATCCAATTAAG TTGGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAGCTAAGCCCTA TTTTTTTGTAAAATT TERM 22 23100 - 23141 + F 100 -16.9 -4.45201 | opp_overlap 23089 23098 23097, overlap 23089 23088 23098 AAATCCAATTAAGTT GGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAGCTAAGCCC TATTTTTTTGTAAAA TERM 23 23175 - 23191 + F 71 -8.1 -3.10869 | opp_overlap 23173 23172, overlap 23146 23173 23172 TTTGTAAAAAAGTTG GCAAAAA TAG TTTTTGC TATATACTTATTTTT bppA 23231 - 24556 + | BppA bppB 24609 - 25034 + | BppB bppC 25816 - 25040 - | BppC erpA 26247 - 26768 + | ErpA erpB 26796 - 27932 + | ErpB TERM 24 27966 - 27996 + F 100 -8.5 -5.68039 | opp_overlap 27961 27966 TTTGTATACACAAAA TAACAACTAGTAA AAAAA TGACTAGTTGTTA TTTTTTTGTAGATTT TERM 25 27996 - 27966 - f 85 -8.5 -4.60797 | opp_overlap 27966, overlap 27961 TTTGTATACACAAAA TAACAACTAGTAA AAAAA TGACTAGTTGTTA TTTTTTTGTAGATTT BB_P40 28074 - 28655 + | hypothetical protein TERM 26 28708 - 28657 - f 80 -8.4 -4.23213 | gap 1, overlap 28665 GTTATATGCAATAAA TTAGTGAACTGCTATTTCTA-AATC AAA AATTATAGAAATAGCAGCGAACTAA ATCAATAAAAGCTAA TERM 27 28700 - 28665 - f 87 -10.8 -3.18869 | gap 1, overlap 28657 CAATAAATTAGTGAA CTGCTATTTCTA-AATC AAA AATTATAGAAATAGCAG CGAACTAAATCAATA TERM 28 28797 - 28811 + F 87 -7.2 -5.093 | GCTTTACTATTTAGA GTAACA AAT TGTTAC TTTTGTTATTTTAGA BB_P41 28835 - 29401 + | hypothetical protein TERM 29 30594 - 30580 - g 72 -3.6 -5.28176 | TTTACTTACAAAAAA CTTTAT ATT ACAAAG TACAGTAGTTCTTCC BB_P42 29398 - 30750 + | hypothetical protein SEQUENCE gi|11497103|ref|NC_000949.1| Borrelia burgdorferi B31 plasmid cp32-3, complete sequence (length 30223) BB_S01 66 - 1289 + | hypothetical protein BB_S02 1306 - 1998 + | hypothetical protein BB_S03 2011 - 2568 + | hypothetical protein TERM 1 3117 - 3104 - g 75 -5.3 -4.98857 | ATCCAAGTATAAAAA TAGGA GAAA TCCTA GACATAAATAATAAC TERM 2 3142 - 3126 - g 72 -6.7 -4.13648 | opp_overlap 3129, overlap 3129 AATCCTAGACATAAA TAATAAC GGT GTTATTA TCAAGGCTGGAGGTG BB_S04 2575 - 3339 + | hypothetical protein BB_S05 3369 - 3941 + | hypothetical protein BB_S06 3963 - 4922 + | hypothetical protein BB_S07 4936 - 5397 + | hypothetical protein BB_S08 5379 - 5780 + | hypothetical protein BB_S09 5768 - 6157 + | hypothetical protein BB_S10 6154 - 6720 + | hypothetical protein TERM 3 7244 - 7225 - g 85 -7.2 -4.94811 | overlap 7227 TGAAAAAGAAAGAAA TATTGCTG TTTA CAGCAACA ATAAAGACAATTTAC TERM 4 7242 - 7227 - g 75 -7.6 -4.05342 | overlap 7225 AAAAAGAAAGAAATA TTGCTG TTTA CAGCAA CAATAAAGACAATTT BB_S11 6701 - 7813 + | hypothetical protein BB_S12 7828 - 8256 + | hypothetical protein BB_S13 8272 - 8727 + | hypothetical protein BB_S14 8724 - 8960 + | hypothetical protein TERM 5 10206 - 10195 - g 70 -2.2 -5.43866 | GAAGCTTTAAAAAAA CTGC AAGA ACAG GCTGAGAATCAAGAC BB_S15 8968 - 10242 + | hypothetical protein TERM 6 10436 - 10461 + G 72 -3.3 -5.31545 | opp_overlap 10437, overlap 10437 GATGTAATAACCCAA ATATTTGCTCT TTTT GGAGCAGATAA TTTTTTAGTGTTATT BB_S16 10265 - 10948 + | hypothetical protein BB_S17 10952 - 11902 + | hypothetical protein BB_S18 11920 - 12465 + | hypothetical protein BB_S19 12495 - 12827 + | hypothetical protein TERM 7 13210 - 13192 - g 76 -9 -3.04267 | opp_overlap 13192, overlap 13191 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAATATTAATAGT TERM 8 13192 - 13210 + G 74 -9 -2.93616 | opp_overlap 13192 13191 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAATATTAATAGT BB_S20 12824 - 13699 + | hypothetical protein BB_S21 13784 - 14314 + | hypothetical protein BB_S22 14324 - 15136 + | hypothetical protein blyA 15212 - 15415 + | pore-forming hemolysin blyB 15419 - 15766 + | hemolysin accessory protein BB_S25 15756 - 16091 + | hypothetical protein BB_S26 16078 - 16437 + | hypothetical protein BB_S27 16586 - 16903 + | hypothetical protein BB_S28 16915 - 17049 + | hypothetical protein bdrF 17068 - 17697 + | BdrF mlpC 17803 - 18249 + | lipoprotein TERM 9 18278 - 18258 - T 72 -8.2 -3.28745 | opp_overlap 18241 18260, overlap 18241 18253 18260 TGGCTAATAATCTAA CAGCCCCC TATTT GGGGGCTT TAATATTGCTACACT TERM 10 18276 - 18260 - T 87 -10.8 -3.20751 | opp_overlap 18241 18260, overlap 18241 18258 18253 GCTAATAATCTAACA GCCCCC TATTT GGGGGC TTTAATATTGCTACA TERM 11 18260 - 18276 + T 95 -10.8 -3.95022 | opp_overlap 18241 18258 18253 18260, overlap 18241 GCTAATAATCTAACA GCCCCC TATTT GGGGGC TTTAATATTGCTACA BB_S31 19159 - 18287 - | hypothetical protein TERM 12 19285 - 19265 - g 71 -7.7 -3.6123 | opp_overlap 19264 19265, overlap 19263 19267 ATAAAAATAAATATA TAGCAAAAA CTA TTTTTGCCA ACTTTTTTACAAAAA TERM 13 19283 - 19267 - g 73 -8.1 -3.34428 | opp_overlap 19265 19264, overlap 19265 19263 AAAAATAAATATATA GCAAAAA CTA TTTTTGC CAACTTTTTTACAAA TERM 14 19364 - 19313 - g 100 -14.6 -4.86033 | opp_overlap 19313 19318, overlap 19315 AAATCTTTACAAAAA GGTGCGGGCTTAGCTACGTTCTCT TGTT AAAGAACTTAGCTAAGCCCATATC TTTTTTTCTTGTAAA TERM 15 19313 - 19364 + G 100 -14.6 -5.88565 | opp_overlap 19313 19315, overlap 19318 AAATCTTTACAAAAA GGTGCGGGCTTAGCTACGTTCTCT TGTT AAAGAACTTAGCTAAGCCCATATC TTTTTTTCTTGTAAA TERM 16 19362 - 19315 - g 100 -15.8 -2.69598 | opp_overlap 19313 19318, overlap 19313 ATCTTTACAAAAAGG TGCGGGCTTAGCTACGTTCTCT TGTT AAAGAACTTAGCTAAGCCCATA TCTTTTTTTCTTGTA TERM 17 19318 - 19359 + G 100 -17.5 -2.88812 | opp_overlap 19315 19313, overlap 19313 TTTACAAAAAGGTGC GGGCTTAGCTACGTTCTCT TGTT AAAGAACTTAGCTAAGCCC ATATCTTTTTTTCTT BB_S32 19198 - 19395 + | hypothetical protein TERM 18 19974 - 19955 - g 100 -9.4 -5.4148 | opp_overlap 19955 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 19 19955 - 19974 + G 79 -9.4 -3.18429 | opp_overlap 19955 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 20 20269 - 20247 - g 90 -9.3 -4.54343 | ACAAATTTAAATAAA TCTTGCTTT AAAGA AAAGCAAGA GAAACTAAAGAAAAT BB_S33 19605 - 20705 + | hypothetical protein BB_S34 20715 - 21281 + | hypothetical protein TERM 21 21752 - 21777 + G 71 -4.3 -4.89966 | gap 1, opp_overlap 21757 GAAAGTTTAGATTTA TTTAA-TTTCTT TGT AAGAAAATTAAA TTTATTTTTACCTAT BB_S35 21257 - 21997 + | plasmid partition protein, putative TERM 22 22013 - 21999 - f 81 -7.2 -4.77795 | opp_overlap 21998 TAAAAAAAATATAAA GTCTAA TAA TTAGAC AGTTTAATGTAAAAG BB_S36 22038 - 22580 + | hypothetical protein bdrE 22593 - 23183 + | BdrE TERM 23 23281 - 23322 + F 100 -9.1 -5.07652 | CTTTTTCATAAATTA GAACTTATTTGAATTTTTT AACA AGAGAATTTAAATAGGTTC TTTTATTTTAACAAA TERM 24 23410 - 23386 - f 75 -7.3 -4.23892 | TTCAATTATTGAAAA GCTTATTTAAA TTA TTTTAATAAGC AAATTTGATTAAACC TERM 25 23549 - 23600 + F 83 -6.1 -5.40474 | opp_overlap 23543 23551 23593 23594, overlap 23543 23542 23551 CAAAACAATCCAATC AAGTTGGGTTTAGCTAAGTTCTT GGATAA GAGAATTTAAATAAACCCAACTA TTTTTTTACAAAAAT TERM 26 23551 - 23598 + F 84 -8.7 -4.34482 | opp_overlap 23543 23551 23593 23594, overlap 23543 23542 23549 AAACAATCCAATCAA GTTGGGTTTAGCTAAGTTCTT GGATAA GAGAATTTAAATAAACCCAAC TATTTTTTTACAAAA TERM 27 23598 - 23551 - f 70 -8 -3.43651 | opp_overlap 23543 23542 23551 23549, overlap 23543 23593 23594 AAACAATCCAATCAA GTTGGGTTTAGCTAAGTTCT TGGATAAG AGAATTTAAATAAACCCAAC TATTTTTTTACAAAA TERM 28 23637 - 23593 - f 75 -6.8 -4.51765 | gap 1, opp_overlap 23551 23549 23602 23633 23634 23636, overlap 23551 23594 23615 23633 23634 GAGAATTTAAATAAA CCCAACTATT-TTTTTACAAA AATT TTTGTAAAAAAAAAAGTTGGC AAAAATAGTTTTTGC TERM 29 23636 - 23594 - f 90 -10.3 -3.29975 | gap 1, opp_overlap 23551 23549 23602 23633 23634, overlap 23551 23593 23615 23633 23634 AGAATTTAAATAAAC CCAACTATT-TTTTTACAAA AATT TTTGTAAAAAAAAAAGTTGG CAAAAATAGTTTTTG TERM 30 23634 - 23654 + F 72 -7.7 -3.6123 | opp_overlap 23594 23593 23634 23633, overlap 23633 23636 TGTAAAAAAAAAAGT TGGCAAAAA TAG TTTTTGCTA TATATTTATTTTTAT TERM 31 23636 - 23652 + F 74 -8.1 -3.34428 | opp_overlap 23593 23634 23633, overlap 23634 23633 TAAAAAAAAAAGTTG GCAAAAA TAG TTTTTGC TATATATTTATTTTT bppA 23649 - 25016 + | BppA bppB 25069 - 25494 + | BppB bppC 26276 - 25500 - | BppC erpG 26708 - 27298 + | ErpG TERM 32 27365 - 27325 - f 100 -11.5 -4.8048 | opp_overlap 27332, overlap 27328 TTTTGATAGTAAAAA TTATAAACAACAAGACTAA CAA TCAGTCTTATTGTTTATTA GCATTTACATTGCTG TERM 33 27362 - 27328 - f 100 -13.2 -3.30658 | opp_overlap 27332, overlap 27325 TGATAGTAAAAATTA TAAACAACAAGACTAA CAA TCAGTCTTATTGTTTA TTAGCATTTACATTG bapA 27410 - 27919 + | BapA TERM 34 28019 - 28045 + F 100 -11.8 -4.78753 | opp_overlap 28019 28022 28025 AGCATAAATTATGAA TAACAAGATTAG CTA CTAGTCTTGTTA TTTTATTAATATTGG TERM 35 28045 - 28019 - f 82 -9.6 -3.35869 | opp_overlap 28019, overlap 28022 28025 AGCATAAATTATGAA TAACAAGATTAG CTA CTAGTCTTGTTA TTTTATTAATATTGG BB_S43 28067 - 28249 + | hypothetical protein BB_S44 28236 - 28874 + | hypothetical protein BB_S45 28871 - 30223 + | hypothetical protein SEQUENCE gi|11497149|ref|NC_000950.1| Borrelia burgdorferi B31 plasmid cp32-4, complete sequence (length 30299) BB_R01 66 - 1289 + | hypothetical protein BB_R03 2013 - 2576 + | hypothetical protein TERM 1 3173 - 3152 - g 95 -12.3 -3.21099 | opp_overlap 3151 3148 TGGGGTTATTATCAA GGCTGGTGG TGGG CCACCAACC GTAATTAATGCATAT BB_R04 2580 - 3347 + | hypothetical protein TERM 2 3450 - 3464 + G 72 -7.1 -3.91798 | opp_overlap 3449 GTTTATGAAAAATCC CCAGC ATGAC GCTGG TTTGCTTAGCAATTC BB_R05 3340 - 3951 + | hypothetical protein BB_R06 3958 - 4932 + | hypothetical protein TERM 3 5027 - 5015 - g 77 -6.3 -4.63218 | opp_overlap 4997 5015 5013, overlap 4997 CTTTTGGTAACAAAA CTTCA TTC TGAAG TGTTATTGTTACTAG BB_R07 4952 - 5407 + | hypothetical protein BB_R08 5389 - 5790 + | hypothetical protein BB_R09 5778 - 6167 + | hypothetical protein BB_R10 6164 - 6730 + | hypothetical protein BB_R11 6711 - 7823 + | hypothetical protein BB_R12 7838 - 8266 + | hypothetical protein BB_R13 8282 - 8737 + | hypothetical protein BB_R14 8734 - 8970 + | hypothetical protein BB_R15 8978 - 10273 + | hypothetical protein TERM 4 10380 - 10405 + G 72 -3.3 -5.31545 | opp_overlap 10381, overlap 10381 GATGTAATAACCCAA ATATTTGCTCT TTTT GGAGCAGATAA TTTTTTAGTGTTATT BB_R16 10296 - 10892 + | hypothetical protein BB_R17 10896 - 11846 + | hypothetical protein BB_R18 11864 - 12418 + | hypothetical protein BB_R19 12448 - 12780 + | hypothetical protein BB_R20 12777 - 13652 + | hypothetical protein BB_R21 13662 - 14267 + | hypothetical protein BB_R22 14277 - 15092 + | hypothetical protein blyA 15167 - 15370 + | pore-forming hemolysin blyB 15374 - 15721 + | hemolysin accessory protein BB_R25 15711 - 16046 + | hypothetical protein BB_R26 16033 - 16392 + | hypothetical protein bdrH 16467 - 16997 + | BdrH mlpD 17103 - 17525 + | lipoprotein TERM 5 17552 - 17535 - T 80 -9.8 -2.77433 | opp_overlap 17535, overlap 17532 17530 TCATAATATATAGCA GCCCCC AAATAG GGGGGC TTTACCATGTAAGAA TERM 6 17535 - 17552 + T 89 -9.8 -3.63627 | opp_overlap 17532 17530 17535 TCATAATATATAGCA GCCCCC AAATAG GGGGGC TTTACCATGTAAGAA BB_R29 18664 - 17573 - | hypothetical protein TERM 7 18636 - 18620 - G 70 -8.1 -3.08961 | opp_overlap 18618 18617, overlap 18618 18616 ATAAATAATTATATA GCAAAAA CTA TTTTTGC CAACTTTTTTACAAA TERM 8 18718 - 18670 - R 82 -8.4 -4.38141 | gap 1, opp_overlap 18672, overlap 18667 TTTTACACAAAAGAA GTGGGA-CTTAACCAAATTCCCT TTAA AAAGAATTTCGCCAAGTTCCCAC TATGATTTTAGAAAA BB_R30 18829 - 18734 - | hypothetical protein TERM 9 19329 - 19310 - g 100 -9.4 -5.4148 | opp_overlap 19310 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 10 19310 - 19329 + G 79 -9.4 -3.18429 | opp_overlap 19310 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA BB_R31 18960 - 20057 + | hypothetical protein BB_R32 20067 - 20633 + | hypothetical protein BB_R33 20609 - 21364 + | plasmid partition protein, putative TERM 11 21391 - 21355 - f 86 -9.2 -4.15899 | gap 1, opp_overlap 21367, overlap 21347 AAAAATATTAAACAA TATGTTTTAAAAGTCTT CCGG AAGACTTTTAAAA-ATA AATCAGAAACTTAGG TERM 12 21454 - 21440 - g 93 -4.4 -6.07969 | TAAAAGTAAAAAAAA TATTAT TAA ATAATA GAATTGAGGATGTTC BB_R34 21415 - 21960 + | hypothetical protein TERM 13 22217 - 22206 - g 70 -3 -5.26918 | ATAGTGTAGAAAAAA CTTT GCAA AAAG ATATATCTAGTCTAG brdG 21974 - 22252 + | BdrG TERM 14 22411 - 22452 + F 83 -6.9 -5.13722 | opp_overlap 22400, overlap 22400 TATAGCTCTAAAGTA GAACTTATTTGAATTTTTT AACA AGATAATTTAAATAGGTTC TTTTATTTTAATAAA TERM 15 22549 - 22586 + F 78 -5.8 -5.14682 | opp_overlap 22538 22581, overlap 22581 TAAGCTAAGCCCGCG GCTTTATTAAGCTCTT TAACAT GAGAATTTAATAAAGC TTTTATTTATTATAA TERM 16 22668 - 22629 - f 88 -8.2 -4.86033 | opp_overlap 22627 22625 22629, overlap 22631 22632 AAAGCCTGACAAAAA TAGTTTTAGTTATACATA TGTA TATGTATAACTAAAAAAA TATATTGCTATCAAA TERM 17 22629 - 22668 + F 72 -8.2 -3.16071 | opp_overlap 22629 22631 22632, overlap 22627 22625 AAAGCCTGACAAAAA TAGTTTTAGTTATACATA TGTA TATGTATAACTAAAAAAA TATATTGCTATCAAA TERM 18 22666 - 22631 - f 95 -10.8 -4.04397 | opp_overlap 22629 22627 22625, overlap 22629 22632 AGCCTGACAAAAATA GTTTTAGTTATACATA TGTA TATGTATAACTAAAAA AATATATTGCTATCA TERM 19 22665 - 22632 - f 100 -14.3 -3.01915 | opp_overlap 22629 22627 22625, overlap 22631 22629 GCCTGACAAAAATAG TTTTAGTTATACATA TGTA TATGTATAACTAAAA AAATATATTGCTATC TERM 20 22694 - 22747 + F 100 -7.7 -5.28826 | opp_overlap 22689 22697, overlap 22689 22688 22697 TCAAAAAAATCCAAT TAAGTTGGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAAATAAGCCCAACTAA TTTTTTGTAAAATTT TERM 21 22697 - 22744 + F 82 -9.4 -3.44801 | opp_overlap 22689 22697, overlap 22689 22688 22694 AAAAAATCCAATTAA GTTGGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAAATAAGCCCAAC TAATTTTTTGTAAAA TERM 22 22778 - 22794 + F 71 -8.1 -3.08961 | opp_overlap 22776 22775, overlap 22749 22776 22775 TTTGTAAAAAAGTTG GCAAAAA TAG TTTTTGC TATATAATTATTTAT bppA 22831 - 24156 + | BppA bppB 24210 - 24635 + | BppB bppC 25435 - 24641 - | BppC TERM 23 25534 - 25522 - R 70 -4.9 -4.74132 | ATATTGTACCAAAAA CTAAA AAT TTTAG TCAAATTTTGTGAGT BB_R39 25636 - 25535 - | hypothetical protein erpH 25865 - 25969 + | ErpH BB_R41 26077 - 26820 + | hypothetical protein TERM 24 27124 - 27114 - g 71 -4 -5.1383 | AATAAGATAGAAAAA TTAG ACT CTAA AAAAACTTCTATTGA erpY 26853 - 27527 + | ErpY TERM 25 27556 - 27592 + F 91 -10.4 -3.65425 | opp_overlap 27554 27558 ATTGTTAATCGAATT TAGAAAAACAAGGCCA ATTGA TAGTCTTGTTTTTCTA TTTAAGCTATATCAC BB_R43 27634 - 28203 + | hypothetical protein BB_R44 28384 - 28950 + | hypothetical protein BB_R45 28947 - 30299 + | hypothetical protein SEQUENCE gi|11497193|ref|NC_000951.1| Borrelia burgdorferi B31 plasmid cp32-6, complete sequence (length 29838) BB_M01 66 - 1289 + | hypothetical protein BB_M02 1306 - 1998 + | hypothetical protein BB_M03 2010 - 2573 + | hypothetical protein TERM 1 3170 - 3149 - g 95 -12.3 -3.21099 | opp_overlap 3148 3145 TGGGGTTATTATCAA GGCTGGTGG TGGG CCACCAACC GTAATTAATGCATAT BB_M04 2577 - 3344 + | hypothetical protein TERM 2 3447 - 3461 + G 72 -7.1 -3.91798 | opp_overlap 3446 GTTTATGAAAAATCC CCAGC ATGAC GCTGG TTTGCTTAGCAATTC BB_M05 3337 - 3948 + | hypothetical protein BB_M06 3955 - 4929 + | hypothetical protein BB_M07 4949 - 5404 + | hypothetical protein BB_M08 5386 - 5787 + | hypothetical protein BB_M09 5775 - 6164 + | hypothetical protein TERM 3 6371 - 6387 + G 74 -8.1 -3.68265 | AATTCTAGAGCCGGT GCATTTT ATG AAAATGC TTTGGAATTCAGTTT BB_M10 6161 - 6730 + | hypothetical protein TERM 4 7254 - 7235 - g 100 -9.4 -4.94811 | TGAAAAAGAAAGAAA TATTGCTG TTTA CAGCAATA ATAAAGACAATTTAC BB_M11 6711 - 7823 + | hypothetical protein BB_M12 7838 - 8266 + | hypothetical protein BB_M13 8282 - 8737 + | hypothetical protein BB_M14 8734 - 8970 + | hypothetical protein BB_M15 8978 - 10252 + | hypothetical protein TERM 5 10393 - 10381 - g 77 -4.9 -5.33921 | AAATCAAGGAAAAAA TCAAT GAT ATTGA AAAGAAAGAAATCAG BB_M16 10275 - 10958 + | hypothetical protein BB_M17 10962 - 11912 + | hypothetical protein BB_M18 11930 - 12484 + | hypothetical protein BB_M19 12514 - 12846 + | hypothetical protein TERM 6 13125 - 13109 - g 78 -10.1 -2.65876 | opp_overlap 13109 13111 13113 TAAAAGCACAACTTA CAGCGCG GTT CGCACTG CTTTACTTAATCTTG BB_M20 12843 - 13718 + | hypothetical protein BB_M21 13728 - 14333 + | hypothetical protein BB_M22 14343 - 15155 + | hypothetical protein blyA 15231 - 15434 + | pore-forming hemolysin blyB 15438 - 15785 + | hemolysin accessory protein BB_M25 15775 - 16110 + | hypothetical protein BB_M26 16097 - 16456 + | hypothetical protein TERM 7 16566 - 16521 - T 90 -10.2 -3.7511 | opp_overlap 16526, overlap 16526 GCTTTTACAACAGAA GAAAATCTAGATATTAAATT TACTTT AATCTAATATCTAGATTTTA ACATTTTCAACATGA TERM 8 16561 - 16526 - T 100 -10.1 -4.92791 | opp_overlap 16526, overlap 16521 TACAACAGAAGAAAA TCTAGATATTAAATT TACTTT AATCTAATATCTAGA TTTTAACATTTTCAA TERM 9 16526 - 16561 + T 78 -7.9 -4.28049 | opp_overlap 16526 16521 TACAACAGAAGAAAA TCTAGATATTAAATT TACTTT AATCTAATATCTAGA TTTTAACATTTTCAA revA 17075 - 16593 - | rev protein mlpF 17247 - 17696 + | lipoprotein TERM 10 17724 - 17704 - T 72 -8.2 -3.1855 | opp_overlap 17706, overlap 17706 GTTCCTAATAGCTAA CAGCCCCC TATTT GGGGGCTT TAATATTGCTATGCT TERM 11 17706 - 17722 + T 95 -10.8 -3.96093 | opp_overlap 17706 17704 TCCTAATAGCTAACA GCCCCC TATTT GGGGGC TTTAATATTGCTATG TERM 12 17722 - 17706 - T 87 -10.8 -3.15503 | opp_overlap 17706, overlap 17704 TCCTAATAGCTAACA GCCCCC TATTT GGGGGC TTTAATATTGCTATG BB_M29 18680 - 17733 - | hypothetical protein TERM 13 18818 - 18764 - H 83 -6.7 -5.25803 | gap 1, opp_overlap 18765 18767, overlap 18767 18769 AATTTTTACAAAAAA GAAGT-GGGACTTAACCAAACTCTTT TCTT AAAGAATCTCGTTAAGTCCCCACTAT ATTATTATTTTTTGC TERM 14 18767 - 18815 + H 74 -8.4 -3.42301 | gap 1, opp_overlap 18764 18767 18769, overlap 18765 TTTTACAAAAAAGAA GT-GGGACTTAACCAAACTCTTT TCTT AAAGAATCTCGTTAAGTCCCCAC TATATTATTATTTTT TERM 15 18815 - 18767 - H 100 -12.8 -4.72201 | gap 1, opp_overlap 18767 18765, overlap 18764 18769 TTTTACAAAAAAGAA GT-GGGACTTAACCAAACTCTTT TCTT AAAGAATCTCGTTAAGTCCCCAC TATATTATTATTTTT TERM 16 18812 - 18769 - H 100 -15.6 -2.64257 | opp_overlap 18767 18765, overlap 18767 18764 TTACAAAAAAGAAGT GGGACTTAACCAAACTCTTT TCTT AAAGAATCTCGTTAAGTCCC CACTATATTATTATT TERM 17 19419 - 19438 + G 79 -9.4 -3.18429 | opp_overlap 19419 TGAAGAGCGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 18 19438 - 19419 - g 100 -9.4 -5.1615 | opp_overlap 19419 TGAAGAGCGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 19 19733 - 19711 - g 90 -9.3 -4.54343 | ACAAATTTAAATAAA TCTTGCTTT AAAGA AAAGCAAGA GAAACTAAAAAGAAT BB_M30 19069 - 20169 + | hypothetical protein BB_M31 20179 - 20745 + | hypothetical protein TERM 20 21376 - 21397 + G 79 -6.7 -4.67641 | opp_overlap 21376 21374, overlap 21395 GAGAAGATTTAAATA GAAGAATTG CTAG TAATTCTTC TTTTGATTTTCAAAT TERM 21 21457 - 21428 - g 78 -8.1 -3.89814 | opp_overlap 21437, overlap 21431 21437 GGATTATATAAAAGA GTATAAAAATTCA TTAA TGAATTTTTATGC AAAATTAAAATAATT TERM 22 21454 - 21431 - g 73 -8.4 -3.00574 | opp_overlap 21437, overlap 21428 21437 TTATATAAAAGAGTA TAAAAATTCA TTAA TGAATTTTTA TGCAAAATTAAAATA BB_M32 20721 - 21470 + | plasmid partition protein, putative TERM 23 21507 - 21474 - f 85 -9.9 -3.15276 | opp_overlap 21480 21483, overlap 21477 AAATTAAAATAATTA TAATTATAAGTTCGA CGCG TTGAACTTATAATTA AGGAGGCTTGTTATG TERM 24 21504 - 21477 - f 70 -7.2 -3.68416 | opp_overlap 21480 21483, overlap 21474 TTAAAATAATTATAA TTATAAGTTCGA CGCG TTGAACTTATAA TTAAGGAGGCTTGTT TERM 25 21956 - 21939 - g 72 -4.9 -4.97824 | opp_overlap 21939, overlap 21952 AAAATCTAAACAAAA CTCAATA AAAC CATTGAG ATTTCAACTTAAAAC BB_M33 21520 - 22098 + | hypothetical protein TERM 26 22573 - 22562 - g 70 -3 -5.3236 | ATAATGTAGAAAAAA CTTT GCAA AAAG ATATATCTAGCTTGA TERM 27 22627 - 22616 - g 76 -4.4 -5.26918 | opp_overlap 22616 ATAGTGTAGAAAAAA CCTT ACAA AAGG ATATATTTAACCTAG bdrK 22102 - 22770 + | BdrK TERM 28 23105 - 23156 + F 88 -6.8 -5.61596 | opp_overlap 23099 23107, overlap 23099 23098 23107 CAAAAAAATCCAATT AAGTTGGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAAATAAGCCCAACTA TTTTTTTGTAAAAAT TERM 29 23107 - 23154 + F 93 -9.4 -4.45201 | opp_overlap 23099 23107, overlap 23099 23098 23105 AAAAAATCCAATTAA GTTGGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAAATAAGCCCAAC TATTTTTTTGTAAAA TERM 30 23188 - 23204 + F 71 -8.1 -3.08961 | opp_overlap 23186 23185, overlap 23186 23185 TTTGTAAAAAAGTTG GCAAAAA TAG TTTTTGC TATATACTTATTTAT bppA 23241 - 24566 + | BppA bppB 24619 - 25044 + | BppB bppC 25820 - 25050 - | BppC erpK 26245 - 27015 + | ErpK TERM 31 27082 - 27040 - Tf 100 -11.6 -4.1021 | opp_overlap 27043 27046 27054, overlap 27043 27046 TTTTACAATCATAAA TTATAATATAACAAGACTCA CAG CGAGTCTTGTTATATTATTT AAAATACGTACTATA TERM 32 27043 - 27079 + TF 100 -17 -3.61356 | opp_overlap 27040 27043 27046, overlap 27046 27054 TACAATCATAAATTA TAATATAACAAGACTC ACAGC GAGTCTTGTTATATTA TTTAAAATACGTACT TERM 33 27079 - 27043 - Tf 100 -17.7 -3.07891 | opp_overlap 27043 27046 27054, overlap 27040 27046 TACAATCATAAATTA TAATATAACAAGACTCA CAG CGAGTCTTGTTATATTA TTTAAAATACGTACT TERM 34 27046 - 27076 + TF 100 -14.3 -3.94188 | opp_overlap 27043 27040 27046, overlap 27043 27054 AATCATAAATTATAA TATAACAAGACTC ACAGC GAGTCTTGTTATA TTATTTAAAATACGT TERM 35 27076 - 27046 - Tf 100 -15 -3.66589 | opp_overlap 27046 27043 27054, overlap 27043 27040 AATCATAAATTATAA TATAACAAGACTCA CAG CGAGTCTTGTTATA TTATTTAAAATACGT BB_M39 27745 - 27077 - | hypothetical protein BB_M40 27731 - 27853 + | hypothetical protein BB_M41 27923 - 28489 + | hypothetical protein BB_M42 28486 - 29838 + | hypothetical protein SEQUENCE gi|11497236|ref|NC_000952.1| Borrelia burgdorferi B31 plasmid cp32-7, complete sequence (length 30800) TERM 1 172 - 197 + G 87 -11.3 -2.57344 | opp_overlap 170, overlap 171 175 TGTAGCAGAAGATTG TCTCAAGAACG GACT TGTTCTTGAGA GTTCTGACCGCAATG BB_O01 65 - 1288 + | hypothetical protein BB_O02 1305 - 1997 + | hypothetical protein BB_O03 2010 - 2567 + | hypothetical protein TERM 2 3116 - 3103 - g 75 -5.3 -4.98857 | ATCCAAGTATAAAAA TAGGA GAAA TCCTA GACATAAATAATAAC TERM 3 3141 - 3125 - g 72 -6.7 -4.13648 | opp_overlap 3128, overlap 3128 AATCCTAGACATAAA TAATAAC GGT GTTATTA TCAAGGCTGGAGGTG BB_O04 2574 - 3338 + | hypothetical protein BB_O05 3368 - 3940 + | hypothetical protein BB_O06 3962 - 4921 + | hypothetical protein BB_O07 4935 - 5396 + | hypothetical protein BB_O08 5378 - 5779 + | hypothetical protein BB_O09 5767 - 6156 + | hypothetical protein BB_O10 6153 - 6722 + | hypothetical protein TERM 4 7246 - 7227 - g 100 -9.4 -4.94811 | TGAAAAAGAAAGAAA TATTGCTG TTTA CAGCAATA ATAAAGACAATTTAC BB_O11 6703 - 7815 + | hypothetical protein BB_O12 7830 - 8258 + | hypothetical protein BB_O13 8274 - 8729 + | hypothetical protein BB_O14 8726 - 8962 + | hypothetical protein TERM 5 9877 - 9857 - g 73 -5.5 -4.77759 | overlap 9860 9864 AGAAGCCATGAAAAA CAAGTTAGA GTT TCTAACTCA AGAGGGAGGGAAAAA TERM 6 9874 - 9860 - g 78 -7.2 -4.4831 | overlap 9857 9864 AGCCATGAAAAACAA GTTAGA GTT TCTAAC TCAAGAGGGAGGGAA TERM 7 10281 - 10271 - g 72 -6.8 -4.17009 | opp_overlap 10270 AAAGAACAACAATAA CACC GGG GGTG ATGATTTAGGAAATT BB_O15 8970 - 10304 + | hypothetical protein TERM 8 10446 - 10471 + G 72 -3.3 -5.31545 | opp_overlap 10447, overlap 10447 GATGTAATAACCCAA ATATTTGCTCT TTTC GGAGCAGATAA TTTTTTAGTGTTATT BB_O16 10317 - 10958 + | hypothetical protein BB_O17 10962 - 11903 + | hypothetical protein BB_O18 11904 - 12473 + | hypothetical protein BB_O19 12503 - 12835 + | hypothetical protein TERM 9 13219 - 13199 - g 73 -5.5 -4.68655 | opp_overlap 13200 13212, overlap 13200 TAATTCTAAAAGAAA CTTTACTAG ACG CTAGTAAAT CTACTATTAATAGTT TERM 10 13218 - 13200 - g 79 -9 -3.40108 | opp_overlap 13200 13212, overlap 13199 AATTCTAAAAGAAAC TTTACTAG ACG CTAGTAAA TCTACTATTAATAGT TERM 11 13200 - 13218 + G 74 -9 -2.93616 | opp_overlap 13200 13199, overlap 13212 AATTCTAAAAGAAAC TTTACTAG ACG CTAGTAAA TCTACTATTAATAGT TERM 12 13589 - 13565 - g 72 -7.2 -3.97331 | overlap 13581 AATTTATGGAAATAA GTGCCTGTAT TAAAG ACACAGACAC TGAGAGTATTGCAAA BB_O20 12832 - 13710 + | hypothetical protein BB_O21 13716 - 14321 + | hypothetical protein BB_O22 14331 - 15146 + | hypothetical protein blyA 15222 - 15425 + | pore-forming hemolysin TERM 13 15673 - 15658 - g 70 -4.8 -4.81249 | opp_overlap 15658 CTTTAAATGCAAAAA TCAATA CGGT TATTGA TTTGGTTAATTCTAA blyB 15429 - 15785 + | hemolysin accessory protein BB_O25 15766 - 16101 + | hypothetical protein BB_O26 16088 - 16447 + | hypothetical protein bdrN 16522 - 17139 + | BdrN mlpG 17245 - 17667 + | lipoprotein TERM 14 17675 - 17691 + T 100 -13.7 -3.63627 | opp_overlap 17672 17669 17668 GCAATTAATCTAGCA GCCCCCA TAA TGGGGGC TTTAACATGTAAGAA BB_O29 18770 - 17712 - | hypothetical protein TERM 15 18783 - 18767 - G 70 -8.1 -3.06605 | opp_overlap 18765 18764 AAATATAAGTATATA GCAAAAA CTA TTTTTGC CAACTTTTTTACAAA TERM 16 18868 - 18814 - H 80 -6.7 -5.01732 | gap 1, opp_overlap 18815 18817, overlap 18817 18819 AATTTTTGTAAAAAA GAAGT-GGGACTTAACCAAACTCTTT TCTC AAAGAATCTCGTTAAGTCCCCACTAT ATTATTATTTTTTGC TERM 17 18865 - 18817 - H 100 -12.8 -4.61482 | gap 1, opp_overlap 18817 18815, overlap 18814 18819 TTTTGTAAAAAAGAA GT-GGGACTTAACCAAACTCTTT TCTC AAAGAATCTCGTTAAGTCCCCAC TATATTATTATTTTT TERM 18 18817 - 18865 + H 74 -8.4 -3.42301 | gap 1, opp_overlap 18814 18817 18819, overlap 18815 TTTTGTAAAAAAGAA GT-GGGACTTAACCAAACTCTTT TCTC AAAGAATCTCGTTAAGTCCCCAC TATATTATTATTTTT TERM 19 18862 - 18819 - H 100 -15.6 -2.60977 | opp_overlap 18817 18815, overlap 18817 18814 TTGTAAAAAAGAAGT GGGACTTAACCAAACTCTTT TCTC AAAGAATCTCGTTAAGTCCC CACTATATTATTATT TERM 20 19486 - 19467 - g 100 -9.4 -5.4148 | opp_overlap 19467, overlap 19484 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATACCCATTTTA TERM 21 19467 - 19486 + G 79 -9.4 -3.18429 | opp_overlap 19467 19484 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATACCCATTTTA BB_O30 19117 - 20214 + | hypothetical protein BB_O31 20224 - 20790 + | hypothetical protein TERM 22 21350 - 21332 - g 78 -2.4 -5.83822 | TAGATTTAAAAAAAA TAATACCC ATA AGGCACTA TTTAGTTCGCTTAAA TERM 23 21452 - 21434 - g 70 -7.6 -3.43308 | opp_overlap 21433, overlap 21421 GATAGCAAAAAATGA TCTATTTA ATT TAAATAGA GATTATATGCTAGAG BB_O32 20766 - 21515 + | plasmid partition protein, putative TERM 24 21525 - 21502 - f 100 -14 -4.04491 | opp_overlap 21497 21496 21505 AATTTATAACAATAA TCATGTCCAG GTAA CTGGACATGA TTGCCATTTTAAATG TERM 25 21505 - 21522 + F 80 -9.9 -2.78738 | opp_overlap 21502, overlap 21497 21496 TTATAACAATAATCA TGTCCAG GTAA CTGGACA TGATTGCCATTTTAA TERM 26 21949 - 21927 - g 75 -5.6 -4.77719 | CAAAATCCAATAAAA CCCTTAAGAT TTC AACTTAAGAG TCAAGAAAGTTACGA BB_O33 21522 - 22076 + | hypothetical protein TERM 27 22276 - 22258 - g 73 -7.6 -3.81948 | GAATTTGAGAAAAGA TATATCTA ATT TAGATATA AAAATAGATACTGTA TERM 28 22430 - 22419 - g 70 -3 -5.3236 | ATAATGTAGAAAAAA CTTT ACAA AAAG ATATATCCAGTTTAG TERM 29 22517 - 22506 - g 78 -4.4 -5.40625 | ATAGTATAGAAAAAA CCTT GCAA AAGG ATATATCTAGTCTAG bdrM 22088 - 22660 + | BdrM BB_O35 22755 - 22627 - | hypothetical protein TERM 30 22782 - 22823 + H 100 -9.1 -5.07652 | opp_overlap 22782 22785 TTTCTTTTAAATTTA GAACTTATTTGAATTTTTT AACA AGAAAATCTAAATAAGTTC TTTTATTTTAACAAA TERM 31 23049 - 22995 - H 72 -7.5 -3.5915 | gap 1, opp_overlap 22991 22990 22996 22999, overlap 22991 22999 ATCAAAAAAATCCAA TTAAGTTGGGTTTAGCTAAGTTCTCT AACA AGAGAATTTAAATAAGCCCAAC-TAA TTTTTTGTAAAATTT TERM 32 22996 - 23049 + H 100 -11.3 -5.28826 | opp_overlap 22991 22995 22999, overlap 22991 22990 22999 TCAAAAAAATCCAAT TAAGTTGGGTTTAGCTAAGTTCTCT AACA AGAGAATTTAAATAAGCCCAACTAA TTTTTTGTAAAATTT TERM 33 23046 - 22999 - H 91 -10.8 -3.47915 | opp_overlap 22991 22990 22996 22999, overlap 22991 22995 AAAAAATCCAATTAA GTTGGGTTTAGCTAAGTTCTCT AACA AGAGAATTTAAATAAGCCCAAC TAATTTTTTGTAAAA TERM 34 22999 - 23046 + H 95 -13 -3.44801 | opp_overlap 22991 22999 22995, overlap 22991 22990 22996 AAAAAATCCAATTAA GTTGGGTTTAGCTAAGTTCTCT AACA AGAGAATTTAAATAAGCCCAAC TAATTTTTTGTAAAA TERM 35 23080 - 23096 + H 71 -8.1 -3.06605 | opp_overlap 23078 23077, overlap 23051 TTTGTAAAAAAGTTG GCAAAAA TAG TTTTTGC TATATACTTATATTT bppA 23093 - 24460 + | BppA bppB 24513 - 24938 + | BppB bppC 25720 - 24944 - | BppC TERM 36 26432 - 26422 - g 74 -4 -5.34632 | AATAAAATAGAAAAA TTAG ATT CTAA AAAAACTTCTATTGA TERM 37 26685 - 26699 + G 70 -8.6 -2.58812 | TGTTGGAGTGCAAGC TTGGCA GTG TGCCAA TGAATTAGGTTTGGG erpL 26152 - 26841 + | ErpL erpM 26893 - 27984 + | ErpM TERM 38 28025 - 28056 + T 84 -5.2 -5.68039 | opp_overlap 28025 28020 TTTATATACACAAAA TAGCAGCTGGTT ATTTTTTA AACTAGCCGCTA TTTTTTTGTAGATTT BB_O41 28117 - 28004 - | hypothetical protein BB_O42 28134 - 28703 + | hypothetical protein BB_O43 28885 - 29451 + | hypothetical protein TERM 39 29732 - 29720 - g 75 -3.4 -5.49568 | AATTGAAAATAAAAA GCTA TATTC TAGC GATACGAATAATTTC BB_O44 29448 - 30800 + | hypothetical protein SEQUENCE gi|11497281|ref|NC_000953.1| Borrelia burgdorferi B31 plasmid cp32-8, complete sequence (length 30885) BB_L01 66 - 1289 + | hypothetical protein BB_L02 1306 - 1998 + | hypothetical protein BB_L03 2011 - 2568 + | hypothetical protein TERM 1 3142 - 3126 - g 72 -6.7 -4.16904 | opp_overlap 3129, overlap 3129 AATACTAGACATAAA TAATAAC GGT GTTATTA TCAAGGCCGGAGGTG BB_L04 2575 - 3339 + | hypothetical protein BB_L05 3369 - 3941 + | hypothetical protein BB_L06 3948 - 4922 + | hypothetical protein BB_L07 4936 - 5397 + | hypothetical protein BB_L08 5379 - 5780 + | hypothetical protein BB_L09 5768 - 6157 + | hypothetical protein BB_L10 6154 - 6720 + | hypothetical protein TERM 2 7244 - 7225 - g 85 -7.2 -4.94811 | overlap 7227 TGAAAAAGAAAGAAA TATTGCTG TTTA CAGCAACA ATAAAGACAATTTAC TERM 3 7242 - 7227 - g 75 -7.6 -4.05342 | overlap 7225 AAAAAGAAAGAAATA TTGCTG TTTA CAGCAA CAATAAAGACAATTT BB_L11 6701 - 7813 + | hypothetical protein BB_L12 7828 - 8256 + | hypothetical protein BB_L13 8272 - 8727 + | hypothetical protein BB_L14 8724 - 8960 + | hypothetical protein BB_L15 8968 - 10242 + | hypothetical protein BB_L16 10265 - 10948 + | hypothetical protein BB_L17 10952 - 11902 + | hypothetical protein BB_L18 11920 - 12465 + | hypothetical protein BB_L19 12495 - 12827 + | hypothetical protein TERM 4 13192 - 13210 + G 74 -9 -2.93616 | opp_overlap 13192 13191 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAATATTAATAGT TERM 5 13210 - 13192 - g 76 -9 -3.04267 | opp_overlap 13192, overlap 13191 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAATATTAATAGT BB_L20 12824 - 13699 + | hypothetical protein BB_L21 13709 - 14314 + | hypothetical protein BB_L22 14324 - 15139 + | hypothetical protein blyA 15215 - 15418 + | pore forming hemolysin blyB 15422 - 15769 + | hemolysin accessory protein BB_L25 15759 - 16094 + | hypothetical protein BB_L26 16081 - 16440 + | hypothetical protein bdrP 16515 - 17099 + | BdrP mlpH 17205 - 17651 + | lipoprotein TERM 6 17661 - 17677 + T 95 -10.8 -3.96093 | TCCTAATAGCTATTA GCCCCC TATTT GGGGGC TTTAATCTTGCTATG BB_L29 18761 - 17688 - | hypothetical protein TERM 7 18758 - 18742 - G 70 -8.1 -3.06605 | opp_overlap 18740 18739 AAATATAAGTATATA GCAAAAA CTA TTTTTGC CAACTTTTTTACAAA TERM 8 18842 - 18791 - H 83 -3.8 -5.93809 | overlap 18793 TTTTTACAAAAAAAA TAGGGCTTAGCTAAATTCTCTATT ATCT ACTAAAGAAATTAGTTAAGCCCGT GCTAAAAATTTTTTT TERM 9 18840 - 18793 - H 100 -10.8 -4.62054 | overlap 18791 TTTACAAAAAAAATA GGGCTTAGCTAAATTCTCTATT ATCT ACTAAAGAAATTAGTTAAGCCC GTGCTAAAAATTTTT TERM 10 19460 - 19441 - g 100 -9.4 -5.4148 | opp_overlap 19441 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAAACATTTAA TERM 11 19441 - 19460 + G 79 -9.4 -3.17714 | opp_overlap 19441 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAAACATTTAA BB_L30 19091 - 20188 + | hypothetical protein BB_L31 20198 - 20764 + | hypothetical protein TERM 12 20933 - 20921 - g 70 -2 -5.46698 | opp_overlap 20913, overlap 20913 TTGAAAATCAAAAAA TTGA TCTTG TCAA TAAAAACATATACAG BB_L32 20740 - 21480 + | plasmid partition protein, putative TERM 13 21528 - 21485 - g 100 -8.6 -5.25893 | gap 1, opp_overlap 21478 21500 21501, overlap 21501 AGATATATTAAAAAA TTTATTATAAAAAAAATCCAG ATT CTGGACTTTTTTGA-AATAAA GGAGATTTTTTATGA TERM 14 21500 - 21514 + G 71 -4.2 -5.0538 | opp_overlap 21485 21501, overlap 21501 TTTATTATAAAAAAA ATCCAG ATT CTGGAC TTTTTTGAAATAAAG TERM 15 21513 - 21501 - g 100 -7.7 -5.9873 | opp_overlap 21500 21501, overlap 21485 TTATTATAAAAAAAA TCCAG ATT CTGGA CTTTTTTGAAATAAA TERM 16 21501 - 21513 + G 71 -7.7 -3.62746 | opp_overlap 21501 21485, overlap 21500 TTATTATAAAAAAAA TCCAG ATT CTGGA CTTTTTTGAAATAAA BB_L33 21467 - 21559 + | hypothetical protein TERM 17 21794 - 21759 - g 71 -2.8 -5.38047 | opp_overlap 21789, overlap 21760 21761 21789 GATGGATATAAAAAA TTTGACTATTTTATAA AAGA TTATAAAATAGCTAGA AGTCAAGCTTATAAT TERM 18 22071 - 22057 - g 73 -4.4 -5.13354 | TGGATAAAAAAGAAA TAATTA AAA TAATTA TGAAAGAATATAAAC BB_L34 21540 - 22100 + | hypothetical protein bdrO 22113 - 22691 + | BdrO TERM 19 22673 - 22706 + F 78 -7.8 -4.32649 | gap 1, opp_overlap 22680, overlap 22673 22675 CCTATTTATGAGGTA TT-TACAATACATCA AATAA TGATGTATTGTATAA TTTGATTTTTAAAAT TERM 20 22673 - 22705 + F 80 -9.4 -3.18505 | opp_overlap 22680, overlap 22673 22675 CCTATTTATGAGGTA TTTACAATACATCA AATAA TGATGTATTGTATA ATTTGATTTTTAAAA TERM 21 22675 - 22703 + F 93 -12 -3.14257 | opp_overlap 22680, overlap 22673 22673 TATTTATGAGGTATT TACAATACATCA AATAA TGATGTATTGTA TAATTTGATTTTTAA TERM 22 22788 - 22829 + F 80 -6.9 -5.07652 | opp_overlap 22788 22791, overlap 22768 CTTTTTCATAAAGTA GAACTTATTTAAATTTTTT AACA AGATAACTTAAATAAGTTC TTTTATTTTAACAAA TERM 23 22936 - 22973 + F 100 -13.1 -4.81852 | opp_overlap 22963 22964, overlap 22964 TTCGGTTAAACCCTA GCTTTATTAAGTTCTTT AACA AGAGAATTTAATAAAGC TTTTATTAATTATAA TERM 24 23037 - 23019 - f 74 -6.2 -4.61482 | opp_overlap 23019 23017, overlap 23029 GTTGGCAAAAAACAA TTTATAAT ATT ATTATAAA TATTATAGGAGGGAT TERM 25 23079 - 23120 + F 100 -8.2 -5.93809 | AATCCGATTTAGTTT GGGCTTAACTAAGTTCTT TTGTTT GAGAATATAGTTAAGCTC TTTTTTTTATAAAAA TERM 26 23225 - 23276 + F 83 -3.9 -5.93809 | opp_overlap 23219 23227, overlap 23219 23218 23227 CAAAACAATCCAATT AAGTTGGGTTTAGCTAAGTTCTT AGACAA GAGAATTTAAATAAGCCCAACTA TTTTTTTTGTAAAGA TERM 27 23227 - 23274 + F 77 -6.5 -4.62054 | opp_overlap 23219 23227, overlap 23219 23218 23225 AAACAATCCAATTAA GTTGGGTTTAGCTAAGTTCTT AGACAA GAGAATTTAAATAAGCCCAAC TATTTTTTTTGTAAA TERM 28 23309 - 23325 + G 70 -8.1 -3.06605 | opp_overlap 23307 23306 TTTGTAAAAAAGTTG GCAAAAA TAG TTTTTGC TATATACTTATATTT bppA 23306 - 24691 + | BppA bppB 24744 - 25169 + | BppB bppC 25951 - 25175 - | BppC erpN 26370 - 26903 + | ErpN erpO 26931 - 28067 + | ErpO TERM 29 28101 - 28131 + F 100 -8.5 -5.68039 | opp_overlap 28096 28101 TTTGTATACACAAAA TAACAACTAGTAA AAAAA TGACTAGTTGTTA TTTTTTTGTAGATTT TERM 30 28131 - 28101 - f 85 -8.5 -4.60797 | opp_overlap 28101, overlap 28096 TTTGTATACACAAAA TAACAACTAGTAA AAAAA TGACTAGTTGTTA TTTTTTTGTAGATTT BB_L41 28209 - 28790 + | hypothetical protein TERM 31 28843 - 28792 - f 80 -8.4 -4.23213 | gap 1, overlap 28800 GTTATATGCAATAAA TTAGTGAACTGCTATTTCTA-AATC AAA AATTATAGAAATAGCAGCGAACTAA ATCAATAAAAGCTAA TERM 32 28835 - 28800 - f 87 -10.8 -3.18869 | gap 1, overlap 28792 CAATAAATTAGTGAA CTGCTATTTCTA-AATC AAA AATTATAGAAATAGCAG CGAACTAAATCAATA TERM 33 28932 - 28946 + F 87 -7.2 -5.093 | GCTTTACTATTTAGA GTAACA AAT TGTTAC TTTTGTTATTTTAGA BB_L42 28970 - 29536 + | hypothetical protein TERM 34 30729 - 30715 - g 72 -3.6 -5.28176 | TTTACTTACAAAAAA CTTTAT ATT ACAAAG TACAGTAGTTCTTCC BB_L43 29533 - 30885 + | hypothetical protein SEQUENCE gi|11497325|ref|NC_000954.1| Borrelia burgdorferi B31 plasmid cp32-9, complete sequence (length 30651) BBN01 66 - 1292 + | hypothetical protein TERM 1 1540 - 1530 - g 73 -5.4 -4.7373 | GGAGCGTATTAAAAA GCAA TTA TTGC TAGAGGCTGAGCGCA TERM 2 1817 - 1793 - g 74 -8 -3.61589 | opp_overlap 1793, overlap 1789 TGAATATTAAATTAA GAAAAACTGC GAGTA GCAATTTTTC TTCTGTTGACTCTGT BBN02 1309 - 2001 + | hypothetical protein BBN03 2013 - 2579 + | hypothetical protein TERM 3 3176 - 3155 - g 95 -12.3 -3.21099 | opp_overlap 3155 3158 TGGGGTTATTATCAA GGCTGGTGG TGGG CCACCAACC GCAATTAATGCATAT BBN04 2583 - 3350 + | hypothetical protein BBN07 4958 - 5413 + | hypothetical protein BBN08 5395 - 5796 + | hypothetical protein BBN09 5784 - 6173 + | hypothetical protein BBN10 6170 - 6736 + | hypothetical protein BBN11 6717 - 7805 + | hypothetical protein BBN12 7845 - 8273 + | hypothetical protein BBN14 8742 - 8978 + | hypothetical protein BBN15 8986 - 10260 + | hypothetical protein BBN17 11041 - 11991 + | hypothetical protein TERM 4 12685 - 12674 - g 70 -3 -5.30348 | opp_overlap 12674, overlap 12668 ATTGAAGAACAAAAA CAAA GATT TTTG ATATTTTTAAAAACC BBN19 12593 - 12925 + | hypothetical protein TERM 5 13308 - 13290 - g 76 -9 -3.04267 | overlap 13289 AATTCTAAAGGAAAC TTTACTAG ACA CTAGTAAA TCTAACATTAATAGT BBN20 12922 - 13797 + | hypothetical protein blyA 15312 - 15515 + | pore-forming hemolysin blyB 15519 - 15866 + | hemolysin accessory protein BBN25 15856 - 16191 + | hypothetical protein BBN26 16178 - 16537 + | outer surface protein, putative bdrR 16612 - 17196 + | BdrR mlpI 17302 - 17730 + | lipoprotein TERM 6 17757 - 17734 - f 79 -10.2 -2.66249 | overlap 17733 17731 GCTCAGCAATAATAT CGCAGCCCCC ATGT GGGGGCTTCA CCATATAAGAATTCG TERM 7 18842 - 18826 - f 71 -8.1 -3.06605 | opp_overlap 18823 AAATATAAGTATATA GCAAAAA CTA TTTTTGC CAACTTCTTTACAAA TERM 8 18922 - 18873 - f 81 -7.3 -4.86033 | opp_overlap 18873 18874 18876 18877, overlap 18874 AAATTTTTACAAAAA GTGCGGGCTTAGCTAAATTCTCT TGTT AAAGAACTTAGTTAAGCCCATAT CTTTATTTCTTGTAA TERM 9 18873 - 18923 + F 70 -4.9 -4.73677 | gap 1, opp_overlap 18873 18874, overlap 18874 18876 18877 AAATTTTTACAAAAA G-TGCGGGCTTAGCTAAATTCTCT TGTT AAAGAACTTAGTTAAGCCCATATC TTTATTTCTTGTAAA TERM 10 18921 - 18874 - f 91 -10.8 -3.50535 | opp_overlap 18873 18874 18876 18877, overlap 18873 AATTTTTACAAAAAG TGCGGGCTTAGCTAAATTCTCT TGTT AAAGAACTTAGTTAAGCCCATA TCTTTATTTCTTGTA TERM 11 18874 - 18921 + F 78 -8.6 -3.97183 | opp_overlap 18874 18873, overlap 18873 18876 18877 AATTTTTACAAAAAG TGCGGGCTTAGCTAAATTCTCT TGTT AAAGAACTTAGTTAAGCCCATA TCTTTATTTCTTGTA TERM 12 18876 - 18919 + F 79 -9 -3.54574 | opp_overlap 18874 18873, overlap 18874 18873 18877 TTTTTACAAAAAGTG CGGGCTTAGCTAAATTCTCT TGTT AAAGAACTTAGTTAAGCCCA TATCTTTATTTCTTG TERM 13 18877 - 18918 + F 88 -12.5 -2.71118 | opp_overlap 18874 18873, overlap 18876 18874 18873 TTTTACAAAAAGTGC GGGCTTAGCTAAATTCTCT TGTT AAAGAACTTAGTTAAGCCC ATATCTTTATTTCTT TERM 14 19514 - 19533 + G 79 -9.4 -3.18429 | opp_overlap 19514 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA TERM 15 19533 - 19514 - g 100 -9.4 -5.4148 | opp_overlap 19514 TAAAGAACGAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAACCATTTTA BBN30 19164 - 20264 + | hypothetical protein BBN31 20275 - 20841 + | hypothetical protein BBN32 20817 - 21572 + | plasmid partition protein, putative TERM 16 21976 - 21963 - g 71 -3.9 -5.09225 | ATGGCATTGAAAAAA CAATT AAAC AATTG GAAAGTAACAATGTT BBN33 21614 - 22174 + | hypothetical protein TERM 17 22526 - 22515 - g 70 -3 -5.3236 | ATAATGTAGAAAAAA CTTT GCAA AAAG ATATATCTAGCTTGA TERM 18 22580 - 22569 - g 76 -4.4 -5.26918 | opp_overlap 22569 ATAGTGTAGAAAAAA CCTT ACAA AAGG ATATATTTAGCCTAG bdrQ 22184 - 22723 + | BdrQ TERM 19 22774 - 22815 + F 100 -9.1 -5.07652 | TATAGCTTTAAAGTA GAACTTATTTGAATTTTTT AACA AGAGAATTTAAATAGGTTC TTTTATTTTAACAAA TERM 20 23058 - 23109 + F 73 -3.2 -5.61596 | opp_overlap 23052, overlap 23052 23051 23060 CAAAAAAATCCAATT AAGTTGGGTTTAGCTAAGTTCTTT AACA AGAGAATTTAAATAAGTCCAACTA TTTTTTTGTAAAAAT bppA 23194 - 24519 + | BppA bppB 24572 - 24997 + | BppB bppC 25779 - 25558 - | BppC TERM 21 26375 - 26364 - g 77 -3 -5.61824 | TAAAACTTAAAAAAA TAGA ATTC TCTA AATTTACTGTAAAAA erpP 26210 - 26770 + | ErpP TERM 22 27782 - 27770 - g 77 -4.9 -5.2166 | opp_overlap 27770 GAAGAAGTTAAAAAA TATCT TAA AGATA GTTCTAAATTTGAAG erpQ 26798 - 27829 + | ErpQ TERM 23 27906 - 27875 - Tf 71 -8.2 -3.01726 | gap 1, opp_overlap 27875, overlap 27874 27878 TTTGCGTATACAAAG TAACAGCTAGTAGAA AAG TTC-ACTGGCTGTTA TTTTTTTGTAGATTT TERM 24 27875 - 27906 + TF 100 -10.4 -5.68039 | gap 1, opp_overlap 27875 27874 27878 TTTGCGTATACAAAG TAACAGCTAGTAGAA AAG TTC-ACTGGCTGTTA TTTTTTTGTAGATTT BBN40 27991 - 27881 - | hypothetical protein BBN41 27984 - 28544 + | hypothetical protein BBN42 28736 - 29302 + | hypothetical protein TERM 25 30495 - 30481 - g 72 -3.6 -5.28176 | TTTACTTACAAAAAA CTTTAT ATT ACAAAG TACAGTAGTTCTTCT BBN43 29299 - 30651 + | hypothetical protein SEQUENCE gi|11497360|ref|NC_000955.1| Borrelia burgdorferi B31 plasmid lp21, complete sequence (length 18753) BBU01 184 - 618 + | hypothetical protein BBU02 746 - 1114 + | hypothetical protein TERM 1 1301 - 1248 - T 100 -12.9 -3.84712 | gap 1, opp_overlap 1248 1252, overlap 1252 1267 TAATGTTACACCAAA TGAA-TAGGGCTTAAAACAATTTCCT TTA AAGAAATTTCTCTAAGCCCTACTTCA TTGCTTATTATTACG TERM 2 1296 - 1252 - T 100 -13.9 -3.59402 | opp_overlap 1252 1248, overlap 1248 1267 GTTACACCAAATGAA TAGGGCTTAAAACAATTTCCT TTA AAGAAATTTCTCTAAGCCCTA CTTCATTGCTTATTA BBU03 1357 - 1238 - | hypothetical protein TERM 3 1428 - 1479 + H 100 -25.2 -3.827 | opp_overlap 1428 1438, overlap 1433 1438 TAAAATTTTAAATAA TATAACTAAATTTGCTATAAAAGT ATTT ACTTTTATAGCAAATTTAGTTATA TTTAAATTGCTTATT TERM 4 1479 - 1428 - H 100 -25.2 -4.00411 | opp_overlap 1428 1433 1438, overlap 1438 TAAAATTTTAAATAA TATAACTAAATTTGCTATAAAAGT ATTT ACTTTTATAGCAAATTTAGTTATA TTTAAATTGCTTATT TERM 5 1433 - 1474 + H 100 -20.7 -3.86372 | opp_overlap 1428 1438, overlap 1428 1438 TTTTAAATAATATAA CTAAATTTGCTATAAAAGT ATTT ACTTTTATAGCAAATTTAG TTATATTTAAATTGC TERM 6 1438 - 1469 + H 100 -14.8 -4.11501 | opp_overlap 1428 1438, overlap 1433 1428 AATAATATAACTAAA TTTGCTATAAAAGT ATTT ACTTTTATAGCAAA TTTAGTTATATTTAA TERM 7 1469 - 1438 - H 100 -14.8 -4.10731 | opp_overlap 1438 1433 1428, overlap 1428 AATAATATAACTAAA TTTGCTATAAAAGT ATTT ACTTTTATAGCAAA TTTAGTTATATTTAA TERM 8 1882 - 1870 - g 87 -2.7 -6.23545 | TTTAAAGAAAAAAAA GAAAC AAG ATTTC AAAATAGAGTTACTA BBU04 1486 - 2628 + | hypothetical protein BBU05 2868 - 3656 + | plasmid partition protein, putative BBU06 14633 - 15235 + | hypothetical protein BBU07 15349 - 15813 + | hypothetical protein BBU08 15791 - 16084 + | hypothetical protein TERM 9 16231 - 16191 - T 100 -14.4 -3.08679 | opp_overlap 16192 16201, overlap 16201 GTTTGTTAGGCAATA TTAAGAAAAACAAGACTA CAAGT TAGTCTTGTTTTTCTTAT TTACATTCAAACTTG TERM 10 16192 - 16230 + T 100 -17.9 -3.75897 | opp_overlap 16191 16201, overlap 16201 TTTGTTAGGCAATAT TAAGAAAAACAAGACTA CAAGT TAGTCTTGTTTTTCTTA TTTACATTCAAACTT TERM 11 16201 - 16221 + T 100 -8.4 -5.38549 | opp_overlap 16191 16201, overlap 16192 CAATATTAAGAAAAA CAAGACTA CAAGT TAGTCTTG TTTTTCTTATTTACA TERM 12 16221 - 16201 - T 95 -8.4 -5.19251 | opp_overlap 16201 16192, overlap 16191 CAATATTAAGAAAAA CAAGACTA CAAGT TAGTCTTG TTTTTCTTATTTACA BBU09 16548 - 16228 - | hypothetical protein BBU10 16603 - 16800 + | hypothetical protein TERM 13 16910 - 16896 - g 74 -5 -5.0809 | AATAAATGATAAAAA CACCAA TAA TTAGTG AAGATCAATTTAAAA TERM 14 17424 - 17402 - g 75 -3.5 -5.45056 | opp_overlap 17412 CCAAAAAAAAATAAA GACTCTA ATATTGGCA TAGAGTC AACTATTATTGAATT BBU11 16886 - 17878 + | hypothetical protein SEQUENCE gi|11497372|ref|NC_000956.1| Borrelia burgdorferi B31 plasmid lp56, complete sequence (length 52971) BB_Q01 279 - 548 + | hypothetical protein TERM 1 670 - 612 - f 89 -12.3 -2.90571 | opp_overlap 623 AATTTTTTAAGCACA TTTTGT-GTGAACTGCTATTTCTATAATC TTT GATT-TAGAAATAGCAGTTCACTAGATAA TAATAAAGCTAAAAT TERM 2 623 - 658 + F 100 -14.4 -3.08464 | gap 1, opp_overlap 612 CACATTTTGTGTGAA CTGCTATTTCTATAATC TTT GATT-TAGAAATAGCAG TTCACTAGATAATAA BB_Q02 710 - 802 + | hypothetical protein BB_Q03 856 - 1407 + | outer membrane protein, putative TERM 3 2865 - 2855 - g 73 -5.4 -4.68919 | AAAGAGAAATCAAAA TCCA ACA TGGA AGCAAGCTCTAAAGA BB_Q05 2744 - 3496 + | antigen, P35, putative TERM 4 3571 - 3608 + F 78 -5.9 -4.98531 | opp_overlap 3575 3577 3581 3583, overlap 3572 3575 CTTAATTATTAGGAG GTAATATTAATATGAAA AAAT TTTCACATTAATATTAA TTTTTAGTTTAACAA TERM 5 3572 - 3607 + F 83 -9.4 -3.58396 | opp_overlap 3575 3577 3581 3583, overlap 3571 3575 TTAATTATTAGGAGG TAATATTAATATGAAA AAAT TTTCACATTAATATTA ATTTTTAGTTTAACA TERM 6 3604 - 3575 - f 74 -8.9 -3.10894 | opp_overlap 3572 3571 3575, overlap 3577 3581 3583 ATTATTAGGAGGTAA TATTAATATGAAA AAAT TTTCACATTAATA TTAATTTTTAGTTTA BB_Q06 3623 - 4108 + | hypothetical protein BB_Q07 4986 - 4249 - | hypothetical protein TERM 7 4292 - 4275 - G 88 -5.5 -5.56112 | ATAAAAATGAAAAAA GTCCCCC CCAA AAGGGAC GCTTTGATTGCGACG TERM 8 4466 - 4441 - G 75 -8.5 -3.35706 | opp_overlap 4441 AATTAGATCTGATAA GACTTCTTTTT TAGT AAAAAAAAGTC TTTCAAGAATATAAC TERM 9 5030 - 5017 - R 76 -9.5 -2.84986 | overlap 5016 5015 TACTTATAAAAAAGT GCGCC GTGC GGCGC TGAACGACTCAATAG BB_Q08 5830 - 5069 - | plasmid partition protein, putative TERM 10 5318 - 5287 - GR 73 -7.6 -3.80625 | opp_overlap 5287 5289 5290 5296 5313, overlap 5311 TTTCTATAATCGAAA TATTAAAGCTTTTA TTTC TAAAATCTTTAATA TCATTAATGGTTTGC TERM 11 5437 - 5427 - GR 84 -6.8 -5.07652 | TTTTTTAAAATAAAA CCCA AGT TGGG TGGGGTGTCAAGTAA BB_Q09 6339 - 5803 - | hypothetical protein TERM 12 6263 - 6284 + gr 73 -4.5 -5.11881 | overlap 6262 TTTTTATTCTCCTTT TCTTCTATT TTAT AAAAGAAGA TTCTTTTTTTTGTTT BB_Q10 6674 - 6336 - | hypothetical protein TERM 13 6633 - 6612 - G 95 -12.3 -3.21099 | opp_overlap 6612 6615 TGGGGTTATTATCAA GGCTGGTGG TGGG CCACCAACC GCAATTAATGCATAT BB_Q12 6800 - 7411 + | hypothetical protein BB_Q13 7418 - 8392 + | hypothetical protein BB_Q14 8406 - 8867 + | hypothetical protein BB_Q15 8849 - 9250 + | hypothetical protein BB_Q17 9624 - 10190 + | hypothetical protein BB_Q18 10171 - 11283 + | hypothetical protein BB_Q19 11276 - 11725 + | hypothetical protein BB_Q20 11741 - 12196 + | hypothetical protein BB_Q21 12193 - 12429 + | hypothetical protein TERM 14 13696 - 13685 - g 70 -2.2 -5.43866 | GAAGCTTTAAAAAAA CTGC AAGA ACAG GCTGAGAATCAAGAC BB_Q22 12437 - 13732 + | hypothetical protein TERM 15 13926 - 13951 + G 72 -3.3 -5.31545 | opp_overlap 13927, overlap 13927 GATGTAATAACCCAA ATATTTGCTCT TTTT GGAGCAGATAA TTTTTTAGTGTTATT BB_Q23 13755 - 14438 + | hypothetical protein BB_Q24 14442 - 15392 + | hypothetical protein BB_Q25 15410 - 15964 + | hypothetical protein BB_Q26 15994 - 16326 + | hypothetical protein TERM 16 16605 - 16589 - g 78 -10.1 -2.65876 | opp_overlap 16589 16591 16593 TAAAAGCACAACTTA CAGCGCG GTT CGCACTG CTTTACTTAATCTTG BB_Q27 16323 - 17198 + | hypothetical protein BB_Q28 17208 - 17813 + | hypothetical protein BB_Q29 17823 - 18638 + | hypothetical protein blyA 18713 - 18916 + | pore-forming hemolysin blyB 18920 - 19267 + | hemolysin accessory protein BB_Q32 19257 - 19592 + | hypothetical protein BB_Q33 19579 - 19938 + | hypothetical protein TERM 17 20622 - 20596 - g 74 -8.2 -3.61603 | opp_overlap 20598, overlap 20594 20592 ATTTACAAAAAGACA TATCTAATTTAG ATG CTAAAATAGATA ATGTAGAAAAGAATT bdrW 20022 - 20738 + | BdrW mlpJ 20844 - 21455 + | MlpJ BB_Q36 21424 - 21516 + | hypothetical protein TERM 18 21521 - 21505 - T 81 -10.8 -2.65993 | opp_overlap 21505 ATTATACCTATAGCA GCCCCC AAATA GGGGGC TTTAATATTGCTATG TERM 19 21505 - 21521 + T 95 -10.8 -3.96093 | opp_overlap 21505 ATTATACCTATAGCA GCCCCC AAATA GGGGGC TTTAATATTGCTATG BB_Q37 22479 - 21532 - | hypothetical protein TERM 20 22534 - 22518 - H 71 -8.1 -3.06605 | opp_overlap 22516 22515 AAATATAAGTATATA GCAAAAA CTA TTTTTGC CAACTTTTTTACAAA TERM 21 22617 - 22566 - H 75 -3.8 -5.61596 | overlap 22568 ATTTTTACAAAAAAA TAGGGCTTAGCTAAATTCTCTATT ATCT ACTAAAGAAATTAGTTAAGCCCGT GCTAAAAATTTTTTT TERM 22 22615 - 22568 - H 100 -10.8 -4.45201 | overlap 22566 TTTTACAAAAAAATA GGGCTTAGCTAAATTCTCTATT ATCT ACTAAAGAAATTAGTTAAGCCC GTGCTAAAAATTTTT TERM 23 23238 - 23219 - g 100 -9.4 -5.66989 | opp_overlap 23219 TAAAGAGCAAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAAACATTTTA TERM 24 23219 - 23238 + G 79 -9.4 -3.18429 | opp_overlap 23219 TAAAGAGCAAAAAAA CTCTAGAT TTAA ATCTAGAG TTAATAAACATTTTA BB_Q38 22869 - 23966 + | hypothetical protein BB_Q39 23976 - 24542 + | hypothetical protein BB_Q40 24518 - 25273 + | plasmid partition protein, putative TERM 25 25275 - 25294 + F 91 -10.8 -3.59979 | opp_overlap 25275 AATATGTTAAATAAA TCCATACG GATC CGTATGGA TTTCAAATAAAAGAG TERM 26 25294 - 25275 - f 100 -10.8 -4.4572 | opp_overlap 25275 AATATGTTAAATAAA TCCATACG GATC CGTATGGA TTTCAAATAAAAGAG BB_Q41 25317 - 25877 + | hypothetical protein bdrV 25890 - 26426 + | BdrV TERM 27 26524 - 26565 + F 100 -9.1 -5.07652 | CTTTTTCATAAATTA GAACTTATTTGAATTTTTT AACA AGAGAATTTAAATAGGTTC TTTTATTTTAACAAA TERM 28 26653 - 26629 - f 75 -7.3 -4.23892 | TTCAATTATTGAAAA GCTTATTTAAA TTA TTTTAATAAGC AAATTTGATTAAACC TERM 29 26782 - 26833 + F 87 -6.1 -5.63504 | opp_overlap 26776 26784, overlap 26776 26775 26784 CAAAACAATCCAATC AAGTTGGGTTTAGCTAAGTTCTT AGATAA GAGAATTTAAATAAACCCAACTA TTTTTTTGTAAAATT TERM 30 26831 - 26784 - f 70 -8 -3.43651 | opp_overlap 26776 26775 26782 26784, overlap 26776 AAACAATCCAATCAA GTTGGGTTTAGCTAAGTTCT TAGATAAG AGAATTTAAATAAACCCAAC TATTTTTTTGTAAAA TERM 31 26784 - 26831 + F 86 -8.7 -4.45201 | opp_overlap 26776 26784, overlap 26776 26775 26782 AAACAATCCAATCAA GTTGGGTTTAGCTAAGTTCTT AGATAA GAGAATTTAAATAAACCCAAC TATTTTTTTGTAAAA bppA 26879 - 28246 + | BppA bppB 28299 - 28724 + | BppB bppC 29506 - 28730 - | BppC TERM 32 29027 - 29039 + g 80 -6.3 -4.98255 | opp_overlap 29026 AAAAAAATAAGTACG TCTTG TAT CAAGA TTTTTCTCATTAAAA BB_Q46 29559 - 29654 + | hypothetical protein erpX 29937 - 30974 + | ErpX TERM 33 31052 - 31021 - f 82 -8.2 -4.55287 | gap 1, opp_overlap 31021 TTTACGTACACAAAA TAACAGCTAGTAGAA AAG TTC-ACTGGCTGTTA TTTTTTTGTAGATTT TERM 34 31021 - 31052 + F 100 -10.4 -5.68039 | gap 1, opp_overlap 31021 TTTACGTACACAAAA TAACAGCTAGTAGAA AAG TTC-ACTGGCTGTTA TTTTTTTGTAGATTT TERM 35 31428 - 31414 - g 86 -4.4 -5.83226 | opp_overlap 31414 AATCTAATAAAAAAA TTTAAA AGT TTTAAA GTTGATTTTAGCTAC BB_Q48 31117 - 31710 + | hypothetical protein BB_Q49 31892 - 32458 + | hypothetical protein TERM 36 32739 - 32727 - g 75 -3.4 -5.49568 | AATTGAAAATAAAAA GCTA TATTC TAGC GATACGAATAATTTC BB_Q50 32455 - 33807 + | hypothetical protein TERM 37 33980 - 34005 + F 82 -11.3 -2.57344 | opp_overlap 33978, overlap 33979 33983 TGTAGCAGAAGATTG TCTCAAGAACG GACT TGTTCTTGAGA GTTCTGACCGCAATG BB_Q52 35115 - 35807 + | hypothetical protein BB_Q53 35819 - 36385 + | hypothetical protein BB_Q54 36389 - 37135 + | hypothetical protein TERM 38 37557 - 37568 + T 70 -3 -5.52023 | AATCTCCAATTTATC GTTT ATTC AAAC TTTTTTATTAATCCT TERM 39 37712 - 37677 - T 100 -20.8 -2.78596 | opp_overlap 37683, overlap 37683 GATTTTCCTAGTAGA GTAAAAGACCATTAGC TTTT GCTAATGGTCTTTTAC AAGGTATTGATAGTT TERM 40 37683 - 37706 + T 100 -14 -4.11371 | opp_overlap 37683 37677 CCTAGTAGAGTAAAA GACCATTAGC TTTT GCTAATGGTC TTTTACAAGGTATTG TERM 41 37706 - 37683 - T 100 -14 -4.371 | opp_overlap 37683, overlap 37677 CCTAGTAGAGTAAAA GACCATTAGC TTTT GCTAATGGTC TTTTACAAGGTATTG BB_Q56 37809 - 37669 - | hypothetical protein TERM 42 37755 - 37715 - G 79 -9.4 -3.29043 | gap 1, opp_overlap 37714 37712, overlap 37716 AATGGTCTTTTACAA GGTATTGATAGTT-CATAA TTTA TTATGTAACTATCAATACA AATGTTATATGCTAA TERM 43 37754 - 37716 - G 100 -12.9 -2.57211 | gap 1, opp_overlap 37714 37712, overlap 37715 ATGGTCTTTTACAAG GTATTGATAGTT-CATAA TTTA TTATGTAACTATCAATAC AAATGTTATATGCTA TERM 44 37820 - 37782 - G 86 -7 -5.06052 | opp_overlap 37786 37788 37792, overlap 37784 37788 37792 CTAAAAAATATAAAA TATCAAGAAATATGAAAA AAA TTTTCATATTTCTCTATT CTGCCATTCTAAATG TERM 45 37818 - 37784 - G 88 -9.6 -4.11412 | opp_overlap 37786 37788 37792, overlap 37782 37788 37792 AAAAAATATAAAATA TCAAGAAATATGAAAA AAA TTTTCATATTTCTCTA TTCTGCCATTCTAAA TERM 46 37786 - 37816 + g 83 -10 -3.25906 | opp_overlap 37784 37782 37788 37792, overlap 37788 37792 AAAATATAAAATATC AAGAAATATGAAAA AAA TTTTCATATTTCTC TATTCTGCCATTCTA TERM 47 37788 - 37814 + g 100 -12.6 -3.18832 | opp_overlap 37788 37784 37782 37792, overlap 37786 37792 AATATAAAATATCAA GAAATATGAAAA AAA TTTTCATATTTC TCTATTCTGCCATTC TERM 48 37814 - 37788 - G 100 -12.6 -3.60336 | opp_overlap 37786 37788 37792, overlap 37784 37782 37792 AATATAAAATATCAA GAAATATGAAAA AAA TTTTCATATTTC TCTATTCTGCCATTC TERM 49 37792 - 37810 + g 77 -7.6 -4.24786 | opp_overlap 37792 37788 37784 37782, overlap 37788 37786 TAAAATATCAAGAAA TATGAAAA AAA TTTTCATA TTTCTCTATTCTGCC TERM 50 37810 - 37792 - G 78 -7.6 -4.38843 | opp_overlap 37788 37786 37792, overlap 37788 37784 37782 TAAAATATCAAGAAA TATGAAAA AAA TTTTCATA TTTCTCTATTCTGCC BB_Q57 38223 - 37816 - | hypothetical protein BB_Q58 38514 - 38416 - | hypothetical protein BB_Q59 39077 - 38565 - | hypothetical protein TERM 51 38882 - 38871 - G 71 -7.2 -3.87373 | TAGATCTTTCATAAA GGCC TTTA GGCC GTCTAACATGCGGTC BB_Q61 39482 - 39357 - | hypothetical protein BB_Q62 39531 - 39905 + | hypothetical protein BB_Q64 40186 - 39959 - | hypothetical protein TERM 52 40183 - 40159 - G 74 -8 -3.64236 | gap 1, opp_overlap 40158, overlap 40175 ATCCAAATTTTGAAA GTACCG-CATT AATG AATGGCGGTAC CATTAGTTTGCATAT TERM 53 40433 - 40380 - g 100 -10.1 -5.75599 | opp_overlap 40385, overlap 40385 GAAAGTACAAAAAAA GAAAATAGAATTATAATATCACT TGGCGTGT AGTGATATTATAATTCTATTTAT ATTTATTCATTAAAT TERM 54 40385 - 40428 + G 100 -14.4 -4.46976 | opp_overlap 40380 40385 TACAAAAAAAGAAAA TAGAATTATAATATCACT TGGCGTGT AGTGATATTATAATTCTA TTTATATTTATTCAT TERM 55 40428 - 40385 - g 100 -14.4 -5.61277 | opp_overlap 40385, overlap 40380 TACAAAAAAAGAAAA TAGAATTATAATATCACT TGGCGTGT AGTGATATTATAATTCTA TTTATATTTATTCAT BB_Q66 40317 - 40412 + | hypothetical protein BB_Q67 43732 - 40436 - | adenine specific DNA methyltransferase TERM 56 41675 - 41625 - G 95 -10.9 -4.09739 | opp_overlap 41627 41629 41631, overlap 41629 41658 TCAAGTTTTTCAAAA TTAAGATCATAAATATGATTTTT ATTTA AAAAATCATATTTATGATCTCTT TTTCCTTTTATACTG TERM 57 41627 - 41673 + g 100 -15.7 -5.1417 | opp_overlap 41625 41629 41658, overlap 41629 41631 AAGTTTTTCAAAATT AAGATCATAAATATGATTTTT ATTTA AAAAATCATATTTATGATCTC TTTTTCCTTTTATAC TERM 58 41671 - 41629 - G 100 -18.3 -3.66908 | opp_overlap 41627 41629 41631, overlap 41625 41658 GTTTTTCAAAATTAA GATCATAAATATGATTTTT ATTTA AAAAATCATATTTATGATC TCTTTTTCCTTTTAT TERM 59 41629 - 41671 + g 100 -18.3 -4.17748 | opp_overlap 41629 41625 41658, overlap 41627 41631 GTTTTTCAAAATTAA GATCATAAATATGATTTTT ATTTA AAAAATCATATTTATGATC TCTTTTTCCTTTTAT TERM 60 41631 - 41642 + g 70 -3 -5.27335 | opp_overlap 41629 41625, overlap 41629 41627 TTTTCAAAATTAAGA TCAT AAAT ATGA TTTTTATTTAAAAAA TERM 61 42245 - 42234 - G 81 -3 -5.86609 | opp_overlap 42234 TTAAAAAAAGAAAAA GAAA AGAA TTTC TGATCTGTAATTTCT TERM 62 43746 - 43713 - G 80 -6.3 -4.84918 | opp_overlap 43715, overlap 43715 TTTATAAATATAAAA GATATATAGTTTAAT ATCA ACTAAACTATATATT TGAAAAAACTATTTT TERM 63 43744 - 43715 - G 84 -8.9 -4.03253 | opp_overlap 43715, overlap 43713 TATAAATATAAAAGA TATATAGTTTAAT ATCA ACTAAACTATATA TTTGAAAAAACTATT TERM 64 43886 - 43902 + r 80 -3.1 -5.9218 | overlap 43877 43882 TATTGCTACTATTTA TAGTAAA TTC TTTATTA TTTTTTTATTGTCTA BB_Q68 44232 - 43915 - | hypothetical protein TERM 65 44229 - 44264 + g 100 -20.8 -2.63112 | opp_overlap 44234, overlap 44234 GTGAATTATCTTTAT CCAAATGGCATAGAAT ATAG ATTCTATGCCATTTGG TAATATGCCCAATTT TERM 66 44259 - 44234 - R 100 -13.5 -3.65351 | opp_overlap 44229 44234 TTATCTTTATCCAAA TGGCATAGAAT ATAG ATTCTATGCCA TTTGGTAATATGCCC TERM 67 44234 - 44259 + r 100 -13.5 -3.81951 | opp_overlap 44234, overlap 44229 TTATCTTTATCCAAA TGGCATAGAAT ATAG ATTCTATGCCA TTTGGTAATATGCCC BB_Q70 44612 - 44508 - | hypothetical protein TERM 68 44749 - 44730 - H 78 -4.4 -5.47399 | TGAAGTTTAAAAAAA TTGTAACA ACAT TATTACAA TCTAAAGAACTTTTA TERM 69 44959 - 44942 - H 73 -5.7 -4.74917 | opp_overlap 44944 44958, overlap 44933 44958 ATTAAACATACAAAA TATGATA TTTA TATCATA TTAACCATAATATTG TERM 70 45059 - 45078 + H 80 -6.6 -5.00616 | opp_overlap 45077, overlap 45077 ATTTTAATTGCTATT TATTCTAA CAAT TTAGAATA TTTTTTAAGGAAAAA BB_Q72 45314 - 45430 + | hypothetical protein TERM 71 45656 - 45666 + F 87 -4 -6.23317 | overlap 45647 TCTTTATTGTTTTCA CAAT CTA ATTG TTTTTTTGTTTTTGT TERM 72 45748 - 45721 - f 100 -15.8 -3.1158 | opp_overlap 45721, overlap 45713 AAAGGAATGTTAACA GGGGCTAATAAA AAAG TTTATTAGCCCC TTATATCTAAAGGTT TERM 73 45721 - 45748 + F 100 -15.8 -3.5947 | opp_overlap 45721 45713 AAAGGAATGTTAACA GGGGCTAATAAA AAAG TTTATTAGCCCC TTATATCTAAAGGTT TERM 74 46760 - 46778 + F 70 -3.2 -5.39755 | TATATATGATAAACT TTTCAAGA AAA TCTTAAAA TTTTTTATAATTATC BB_Q76 46982 - 47080 + | hypothetical protein TERM 75 47138 - 47159 + F 72 -3.9 -5.27769 | gap 1, opp_overlap 47145 GAATGCTTGGGGGAA CCTAA-AATA ATA TATTATTAGG TTTTTGATTTTTTGT BB_Q78 47295 - 47396 + | hypothetical protein TERM 76 47673 - 47705 + T 79 -10.1 -2.69598 | opp_overlap 47673, overlap 47672 47671 TGATTGAGGTAATAA GCTATTTCGATAATT ATT GATTGTTGAAATAGC AGTTTTTATAACGCT TERM 77 47753 - 47717 - T 82 -9.6 -3.30441 | gap 1, opp_overlap 47722, overlap 47718 TAGCAGTTTTTATAA CGC-TAGGCCTATCTTT TATT AAAGATAGGCCTTTGCA TTATGACAATTTCAA TERM 78 47752 - 47718 - T 83 -10.9 -2.5805 | gap 1, opp_overlap 47722, overlap 47717 AGCAGTTTTTATAAC GC-TAGGCCTATCTTT TATT AAAGATAGGCCTTTGC ATTATGACAATTTCA TERM 79 47722 - 47747 + T 100 -14.9 -3.80625 | opp_overlap 47718 47717 GTTTTTATAACGCTA GGCCTATCTTT TATT AAAGATAGGCC TTTGCATTATGACAA TERM 80 48292 - 48302 + T 73 -5.4 -4.82678 | ATTCCATATTGATTT GAAG ATT CTTC TTTTAATTTTTGTAC TERM 81 49216 - 49201 - T 72 -4.8 -5.01811 | opp_overlap 49201, overlap 49202 TTATTAAACTAAAAA TTCATA TTAA TATGAA AGTTTTTTTTATATT BB_Q82 49538 - 49344 - | hypothetical protein BB_Q83 49868 - 49752 - | hypothetical protein BB_Q84 50550 - 50395 - | hypothetical protein TERM 82 50591 - 50605 + r 79 -7.2 -4.57882 | ATTAACTTATTCTTA GCAAAT TAA ATTTGC TTTGTTATTCTTGCC TERM 83 51152 - 51112 - R 86 -12.1 -2.56475 | opp_overlap 51113 51114, overlap 51120 CAACTTTAGATTAAG GGGAGAAACACCTTTAGTA ATA TACTAAAGATGTTTCTCTT TTTAATATCATTATA TERM 84 51114 - 51150 + r 100 -16.9 -4.84274 | opp_overlap 51112 51120, overlap 51113 ACTTTAGATTAAGGG GAGAAACACCTTTAGTA ATA TACTAAAGATGTTTCTC TTTTTAATATCATTA TERM 85 51144 - 51120 - R 100 -10.9 -3.93236 | opp_overlap 51113 51114, overlap 51112 GATTAAGGGGAGAAA CACCTTTAGTA ATA TACTAAAGATG TTTCTCTTTTTAATA BB_Q85 51528 - 51172 - | hypothetical protein BB_Q86 51823 - 51719 - | hypothetical protein BB_Q87 52067 - 51918 - | hypothetical protein BB_Q88 52608 - 52135 - | hypothetical protein BB_Q89 52726 - 52532 - | hypothetical protein SEQUENCE gi|11497445|ref|NC_000957.1| Borrelia burgdorferi B31 plasmid lp5, complete sequence (length 5228) TERM 1 602 - 591 - g 70 -3 -5.28826 | AAATTCTACAAAAAA TTCT ACAA AGAA TTAAAACAATTTACA BB_T01 195 - 638 + | hypothetical protein BB_T02 744 - 1097 + | hypothetical protein TERM 2 1266 - 1252 - g 78 -7.2 -4.57882 | CGCAAGAATAACAAA GCAAAT TAA ATTTGC TAAGAATAAGTTAAT TERM 3 1380 - 1365 - g 74 -4.7 -5.14163 | ATTTATTAATAAAAA GCAAG TTTAAT CTTGC TCTAGCTAAAACGAC BB_T03 1208 - 1576 + | hypothetical protein TERM 4 1726 - 1698 - f 77 -9 -3.35467 | opp_overlap 1698 TCTATAAATGATCAA TCCATAAAGGAC TATAT GTCTTTTATGGA TTTTGAACATAAATA TERM 5 1698 - 1726 + F 100 -11.2 -4.11692 | opp_overlap 1698 TCTATAAATGATCAA TCCATAAAGGAC TATAT GTCTTTTATGGA TTTTGAACATAAATA TERM 6 1941 - 1887 - f 100 -11.9 -4.53303 | gap 1, opp_overlap 1891, overlap 1891 TAGTGTTACATAAAA TGAA-TAGGGCTTAAGACAAATTCTT TATA AAAAACTTGCTTTAAGCCCTATTTCA CGATCACTTCTTTGT TERM 7 1936 - 1891 - f 95 -12.9 -3.79162 | opp_overlap 1891, overlap 1887 GTTACATAAAATGAA TAGGGCTTAAGACAAATTCTT TATA AAAAACTTGCTTTAAGCCCTA TTTCACGATCACTTC TERM 8 1891 - 1936 + F 75 -8.5 -3.58269 | opp_overlap 1887 1891 GTTACATAAAATGAA TAGGGCTTAAGACAAATTCTT TATA AAAAACTTGCTTTAAGCCCTA TTTCACGATCACTTC TERM 9 2058 - 2109 + F 100 -23 -3.34043 | opp_overlap 2058 2063 2069, overlap 2063 2069 ACTAAAACTTTACAA TATAACTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAGTTATA TTGTAAAATGATCAC TERM 10 2109 - 2058 - f 100 -20.8 -3.42768 | opp_overlap 2058 2063 2069, overlap 2063 2069 ACTAAAACTTTACAA TATAACTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAGTTATA TTGTAAAATGATCAC TERM 11 2063 - 2104 + F 100 -18.5 -3.75824 | opp_overlap 2058 2063 2069, overlap 2058 2069 AACTTTACAATATAA CTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAG TTATATTGTAAAATG TERM 12 2104 - 2063 - f 100 -16.3 -3.76226 | opp_overlap 2063 2058 2069, overlap 2058 2069 AACTTTACAATATAA CTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAG TTATATTGTAAAATG TERM 13 2098 - 2069 - f 93 -9.5 -4.57218 | opp_overlap 2069 2063 2058, overlap 2063 2058 ACAATATAACTAAAA TTGCTATAAGAGT ATTT ACTTTTATAGCAA TTTTAGTTATATTGT TERM 14 2069 - 2098 + F 100 -11.7 -4.57218 | opp_overlap 2063 2058 2069, overlap 2063 2058 ACAATATAACTAAAA TTGCTATAAGAGT ATTT ACTTTTATAGCAA TTTTAGTTATATTGT BB_T04 2148 - 3254 + | hypothetical protein TERM 15 3364 - 3350 - g 74 -5 -5.0809 | AATAAATGATAAAAA CACCAA TAA TTAGTG AAGATCAATTTAAAA TERM 16 3878 - 3856 - g 75 -3.5 -5.45056 | opp_overlap 3866 CCAAAAAAAAATAAA GACTCTA ATATTGGCA TAGAGTC AACTATTATTGAATT BB_T06 3340 - 4332 + | hypothetical protein TERM 17 4533 - 4498 - g 100 -12 -4.64844 | overlap 4501 4502 TTTAGATATAGAAAA TGATGCGGAGACAATA AATA TATTGTCTCCGCMTAA AAGTCAAAACATTTT TERM 18 4530 - 4501 - g 100 -13.7 -3.24884 | overlap 4498 4502 AGATATAGAAAATGA TGCGGAGACAATA AATA TATTGTCTCCGCM TAAAAGTCAAAACAT TERM 19 4529 - 4502 - g 100 -17.2 -2.53846 | overlap 4501 4498 GATATAGAAAATGAT GCGGAGACAATA AATA TATTGTCTCCGC MTAAAAGTCAAAACA BB_T07 4388 - 4819 + | outer membrane protein SEQUENCE gi|15594346|ref|NC_001318.1|NC_001318 Borrelia burgdorferi B31, complete genome (length 910724) TERM 1 147 - 178 + G 100 -13.4 -2.8474 | opp_overlap 141, overlap 145 152 TTATTAATATGTAGC GTTAATTTATTTTG TTTT CAAAATAAATTAAC TACTTCTCGATGGGA BB0001 105 - 677 + | hypothetical protein BB0002 1796 - 768 - | beta-N-acetylhexosaminidase, putative BB0003 3148 - 1784 - | hypothetical protein TERM 2 2817 - 2833 + g 80 -5.2 -5.33026 | GCTGGTGTTATCCCC TTTGGA AATTC TCCAAA TTTTTCTTTAAATTC TERM 3 3293 - 3278 - H 76 -6.2 -4.88405 | AACCCTTAAAGAAAA GCTTAT TAAT ATAAGC AAAAAAACAAATTTT TERM 4 3622 - 3586 - g 100 -9.6 -4.652 | AAATTATTTTAAAAA TGAATCTAAGCCCTAT ATTGG ATTGGGATTAGATTCA AGACCAACTGGCAAC TERM 5 4521 - 4497 - g 88 -10.3 -3.38201 | overlap 4495 CAACATCTCTAAATA TTGAAAAAATT GCA AATTTTTTCAA CGCCAAAGTTTATAG BB0004 3395 - 5188 + | phosphoglucomutase (femD) BB0005 6312 - 5251 - | tryptophanyl-tRNA synthetase BB0006 7433 - 6309 - | hypothetical protein BB0007 8315 - 7458 - | hypothetical protein BB0008 8412 - 9197 + | hypothetical protein BB0009 9202 - 10206 + | hypothetical protein TERM 6 10364 - 10340 - g 73 -8.7 -3.05616 | overlap 10339 TAGCATTATAGAAAG TTTAGCTGGAA AAT TTGCAGCTAAA GAATCTTTAATTAAA BB0010 10203 - 10577 + | holo-acyl-carrier protein synthase, putative TERM 7 10796 - 10782 - g 70 -6.4 -4.12456 | ACAGTATGTCCAAAA TGCTAC TTT GCAGCA TTCCCAAGCGAATTT BB0011 10581 - 11420 + | hypothetical protein truA 11421 - 12161 + | tRNA pseudouridine synthase A BB0013 12154 - 12753 + | hypothetical protein TERM 8 13274 - 13292 + G 82 -4.5 -5.63103 | TGTGAATACTATTTA GCACTAG AACAA CAAGTGC TTTTTTTGATTCCCG TERM 9 13819 - 13803 - g 75 -3.7 -5.37593 | GTTTAAATGAAAAAA GACAATC TTT GATTTTC ATTAATAAAAGAGGA TERM 10 14066 - 14048 - g 74 -2.5 -5.73672 | overlap 14040 14059 AAAGAACTAAAAAAA TTTTTAC CAAAT GCAAAAA TTGCAAGAATAGATT BB0014 12746 - 14728 + | primosomal protein N (priA) BB0015 15348 - 14725 - | uridine kinase BB0016 15722 - 15345 - | glpE protein (glpE) TERM 11 15600 - 15610 + g 80 -5.4 -5.24129 | opp_overlap 15586, overlap 15587 ATCCAAAATTTTTGC TCCA TTT TGGA TTTTTTCTAACAAAA TERM 12 15698 - 15680 - G 95 -3.8 -6.38655 | opp_overlap 15696, overlap 15693 15695 15696 AAATATAAAAAAAAA GCAGAACT ATT AATACTGC AAATCTTGCATAATT TERM 13 16661 - 16647 - g 73 -2.9 -5.49569 | opp_overlap 16647 CAGGAACAGAAAAAA CTATA GTATT TATAG TAGTTCCAATAATGC BB0017 15845 - 16804 + | hypothetical protein TERM 14 16828 - 16814 - T 70 -3.6 -5.10154 | overlap 16807 ATTTAAAATTAAAAA TCTCTT AAA AAAAGA ACCAAATTATCAATA BB0018 17817 - 16807 - | hypothetical protein TERM 15 17161 - 17175 + gT 70 -2.9 -5.30189 | CTTTTTTCCTCTATC TTTAG AAACA CTAAA TTTTTTCCTATTGTG BB0019 18304 - 17792 - | hypothetical protein TERM 16 18193 - 18159 - GR 90 -7.9 -5.02323 | opp_overlap 18158 TTATGAGAAACAAAA TTGCCACTGGAAGTC GATTT GTCTTGCAATGGCAA ACTTTTAGCATCACT BB0020 19979 - 18312 - | diphosphate--fructose-6-phosphate 1-phosphotransferase TERM 17 19643 - 19631 - G 70 -6.2 -4.09685 | opp_overlap 19631 TGTCATTCTCCAAAA GGCC TAAAG GGCC TCCCTTGAATCCAAA BB0021 21092 - 20445 - | S-adenosylmethionine: tRNA ribosyltransferase-isomerase ruvB 22101 - 21058 - | Holliday junction DNA helicase B BB0023 22739 - 22146 - | Holliday junction DNA helicase (ruvA) BB0024 22819 - 23958 + | hypothetical protein BB0025 24696 - 23965 - | hypothetical protein BB0026 25623 - 24697 - | methylenetetrahydrofolate dehydrogenase (folD) TERM 18 25877 - 25888 + G 73 -4.4 -5.00884 | GAATAGATTTAAGTG TAGG AATC CCTA TTTTTTACAACGACT BB0027 25753 - 26391 + | hypothetical protein BB0028 26399 - 27448 + | hypothetical protein BB0029 27865 - 27434 - | hypothetical protein TERM 19 27578 - 27555 - G 75 -7 -4.23758 | opp_overlap 27555 ATCTTAGATCTAAAA TATAAATAAT TTAT ATTATTTATA TCAAAAATTCGACCT BB0030 28490 - 27855 - | signal peptidase I (lepB-1) TERM 20 28419 - 28399 - G 82 -2.7 -6.06723 | TTTGTGAAAAAAAAA TTTAAAATT AAA AATGTTAAA AAATATTTAAAAAAA BB0031 29472 - 28492 - | signal peptidase I (lepB-2) TERM 21 30019 - 29977 - g 100 -8.1 -5.79595 | opp_overlap 29979 GGTGAAAATAAAAAA TATTAATGAAAATACAAAA CTAAT TCCTGTTTTTTCATTAATA TCTAGCGAACTTAAA TERM 22 30775 - 30757 - g 73 -3.2 -5.39681 | overlap 30758 30759 AGAACCAAACAAAAA CCCATTAA ATA TTAATGAA ATATCAAAAAAAGTT BB0032 29543 - 31015 + | hypothetical protein smpB 31027 - 31479 + | SsrA-binding protein BB0034 32089 - 31550 - | hypothetical protein BB0035 34037 - 32157 - | DNA topoisomerase IV subunit A TERM 23 32266 - 32285 + g 73 -8 -3.4285 | TTAACAATGTCTTTA TTTGTAGA AAAT TCTACAAA TTCTGGATTCAATGA TERM 24 32741 - 32725 - G 74 -6.7 -4.3255 | overlap 32735 TTTGCAAGCAATAAA TCAATAA AAT TTATTGA ATAACCTCTTATTGA TERM 25 33712 - 33696 - G 70 -6.6 -4.04415 | opp_overlap 33696 GTAAAGAACATCAAA GGCTAA GGGAG TTAGCC TACATTCAATATATC TERM 26 33930 - 33914 - G 70 -5.2 -4.62783 | opp_overlap 33914 CATGCATTTCAAAAA GAGAAT GTATA ATTCTC CTTTGAACTGGTTTA BB0036 35836 - 34037 - | DNA topoisomerase IV subunit B BB0037 36609 - 35857 - | 1-acyl-sn-glycerol-3-phosphate acetyltransferase (plsC) BB0038 38123 - 36606 - | hypothetical protein BB0039 39638 - 38136 - | hypothetical protein TERM 27 39266 - 39278 + g 75 -3.5 -5.53991 | opp_overlap 39266 ACATTTCTTTAGAAA TATAA AAA TTATA TTTTTTTACTAGGTC BB0040 39826 - 40677 + | chemotaxis protein methyltransferase (cheR-1) TERM 28 40671 - 40696 + F 72 -4.8 -4.92783 | opp_overlap 40671 TGCCACCTATAAAAA GAATTAATGC TTATGC GCATCAATTC TTTTTATAATAAATT TERM 29 40696 - 40671 - f 81 -7 -4.87665 | opp_overlap 40671 TGCCACCTATAAAAA GAATTAATGC TTATGC GCATCAATTC TTTTTATAATAAATT BB0041 40677 - 40769 + | hypothetical protein BB0042 41432 - 40761 - | phosphate transport system regulatory protein (phoU) BB0043 42483 - 41443 - | hypothetical protein BB0044 42881 - 42480 - | hypothetical protein BB0045 45366 - 42907 - | P115 protein TERM 30 43683 - 43652 - G 89 -9.8 -3.8397 | opp_overlap 43656 ATATATTCATAATAA TTAGTTTTTTTAAA ATCA TTCAAAAAAACTAA GGAATTAAAATCTTT BB0046 45446 - 45991 + | ribonuclease H (rnhB) TERM 31 45993 - 45976 - T 76 -4.3 -5.36441 | CCTTCATAGAAAAAA TTTTAAA CTAA TTTAAAA AATAAAAATAATAAA BB0047 46394 - 46011 - | hypothetical protein BB0048 46771 - 46601 - | hypothetical protein BB0049 47040 - 46921 - | hypothetical protein BB0050 47167 - 47841 + | hypothetical protein TERM 32 48396 - 48386 - g 71 -2.6 -5.41941 | overlap 48380 TAAAGCAAATAAAAA TAAA ATC TTTA TGGATCATTCATCCT BB0051 47905 - 48606 + | hypothetical protein BB0052 49259 - 48603 - | spoU protein (spoU) BB0053 49341 - 50012 + | uracil-DNA glycosylase TERM 33 50086 - 50064 - T 75 -5.6 -5.08824 | opp_overlap 50067, overlap 50075 50078 CCTTTATGTAAAAAA CTCTGAGTAA ATA CTACTCATAG TATACACAACAGTAA secG 50489 - 50112 - | preprotein translocase subunit SecG BB0055 51251 - 50490 - | triosephosphate isomerase pgk 52434 - 51253 - | phosphoglycerate kinase BB0057 53461 - 52454 - | glyceraldehyde 3-phosphate dehydrogenase (gap) TERM 34 52509 - 52525 + g 71 -8.1 -3.25204 | opp_overlap 52506 52499 52509, overlap 52507 GAATATCCAAACTCA TTGTCAT ACC ATGACAA TATCTTTGCAAATCC BB0058 55504 - 53534 - | hypothetical protein TERM 35 54447 - 54460 + g 70 -5.3 -4.53439 | opp_overlap 54438, overlap 54449 54450 TCAACAGCATTTTTT GCATT AAAC AATGC TTTGTTTAAATTTAA TERM 36 54585 - 54573 - G 76 -4.1 -5.50499 | TTAGATGCAAAAAAA CTCTC CTC AAGAG CAATATTATAAAATT BB0059 56280 - 55501 - | hemolysin (tlyC) TERM 37 56143 - 56119 - G 76 -7.3 -4.37199 | opp_overlap 56119 AGCATAATCAACAAA TATAACTCCTA TCC TAGGAATCATA ATCTCTTTTACAACA BB0060 56748 - 56281 - | putative metalloprotease TERM 38 56470 - 56486 + g 73 -5.2 -4.64846 | opp_overlap 56469 56470 56472 ATATTCAAAAGATAT TACAAG ATCTC CTTGTA TTTTATAATTTATGC TERM 39 56794 - 56813 + r 70 -8 -3.36251 | opp_overlap 56798, overlap 56793 56791 AACTTACAAGTATGA TTAATTGC TATA GCAATTAA ATTATTTTATTTTGC BB0061 57185 - 56832 - | thioredoxin (trxA) TERM 40 56904 - 56886 - G 70 -5.2 -4.56775 | ATCTTCTTGCAAAAA GCCAACAG AAA CCTTTGGC TTGCCATCAACAGGA BB0062 57259 - 57975 + | hypothetical protein BB0063 59036 - 58029 - | hypothetical protein BB0064 60039 - 59101 - | methionyl-tRNA formyltransferase (fmt) TERM 41 59251 - 59233 - G 70 -6.1 -4.24342 | overlap 59236 CCCGGTATTAACAAA TAATCCT TTTTC AGGATTA AAATCAACAATTTCT BB0065 60554 - 60036 - | polypeptide deformylase (def) BB0066 61257 - 60568 - | hypothetical protein BB0067 63032 - 61254 - | peptidase, putative TERM 42 61411 - 61395 - G 71 -8.1 -3.21099 | TTCTTTTACTATCAA TTCCTTT TCA AAAGGAA CAAGGGTTAAATTCT BB0068 63147 - 64028 + | hypothetical protein TERM 43 64477 - 64453 - g 70 -8.6 -2.73624 | overlap 64452 64450 TGAGCAACGAAATAG CCTGGTGC GTTGTTTGT GCACCAGG TCCAAAATGGGCTTC TERM 44 64832 - 64818 - g 79 -3.5 -5.61277 | TATAAAAAAACAAAA GGCAT CGTGT ACGCC ACCCGCCCTGTAATG BB0069 64038 - 65276 + | aminopeptidase II BB0070 65291 - 65752 + | hypothetical protein BB0071 65768 - 67240 + | hypothetical protein TERM 45 67898 - 67882 - g 70 -3.1 -5.36364 | TTAAAAACAGAAAAA TAAAAAT TAA ATCTTTA GAAAATGCATATCCT TERM 46 68232 - 68212 - g 79 -3.3 -5.62288 | CCAATAAAATAAAAA TCGATACAT TAA ACATACCGA TAACAAGAGATATTT TERM 47 68373 - 68336 - g 74 -6.7 -4.35926 | gap 1, opp_overlap 68331, overlap 68338 ATTGCAAATGGAAAA TATT-ATTTTTTCATTCT TAA AGAAAGAAAAAATAAATA ATAGCGGCAAATTAA TERM 48 68370 - 68338 - g 93 -10.9 -3.78026 | opp_overlap 68331, overlap 68336 TGCAAATGGAAAATA TTATTTTTTCATTCT TAA AGAAAGAAAAAATAA ATAATAGCGGCAAAT TERM 49 68959 - 68945 - g 82 -4.4 -5.56264 | opp_overlap 68945, overlap 68938 TCCAAACATAAAAAA TTTAAA AAG TTTAAA TACCTTTACAAGATA BB0072 67248 - 69569 + | hypothetical protein TERM 50 70039 - 70062 + G 80 -4 -5.70829 | opp_overlap 70029 70039 AAACCCCAAAATCAA TATATTGG AAAACGAA CCAATATA TTTTTTTATAATATT BB0073 69566 - 70126 + | hypothetical protein prfB 70173 - 71219 + | peptide chain release factor 2 TERM 51 71241 - 71221 - g 72 -6.9 -4.08919 | opp_overlap 71220 71222, overlap 71209 71222 AAAGCTTAAACTAAA GCTAGCAAT ACC ATTGCTAGT ATTTACAATATGCAA TERM 52 71222 - 71240 + G 88 -10.4 -3.39844 | opp_overlap 71221 71222, overlap 71220 AAGCTTAAACTAAAG CTAGCAAT ACC ATTGCTAG TATTTACAATATGCA TERM 53 71240 - 71222 - g 84 -10.4 -3.04267 | opp_overlap 71222 71220, overlap 71221 AAGCTTAAACTAAAG CTAGCAAT ACC ATTGCTAG TATTTACAATATGCA TERM 54 71573 - 71563 - g 78 -2.6 -5.78622 | overlap 71572 TGAGCTTAAAAAAAA TATT CAA AATA TTAACAATAAACAAA TERM 55 71755 - 71736 - g 70 -2.2 -5.44119 | TTGATCTTAAAAAAA TAGAAAAT TATT ATTTGCTA GAAATTAGCAACATC TERM 56 71955 - 71945 - g 71 -4 -5.07011 | TACATAAATGAAAAA TTTG TTT CAAA AGGAATCTATCACGA BB0075 71201 - 72610 + | hypothetical protein BB0076 72647 - 73492 + | cell division protein, putative BB0077 73489 - 74517 + | hypothetical protein BB0078 74518 - 75039 + | hypothetical protein BB0079 75110 - 75772 + | hypothetical protein BB0080 75732 - 76454 + | ABC transporter, ATP-binding protein BB0081 76451 - 77701 + | hypothetical protein BB0082 79009 - 77711 - | hypothetical protein BB0083 79376 - 79002 - | hypothetical protein TERM 57 79754 - 79743 - g 82 -4.4 -5.69068 | TAAAAATAGAAAAAA CAAG AGAA CTTG TAAAAAATTTCATTA TERM 58 79936 - 79966 + G 100 -14.4 -3.06796 | opp_overlap 79936, overlap 79945 GGTAAATCTTGCAAA TTTAGCTAATTTAA AAA TTAAATTAGCTAAA TTCAATGAAATGGGA TERM 59 79966 - 79936 - g 100 -14.4 -3.5936 | opp_overlap 79936 79945 GGTAAATCTTGCAAA TTTAGCTAATTTAA AAA TTAAATTAGCTAAA TTCAATGAAATGGGA BB0084 79505 - 80773 + | aminotransferase (nifS) TERM 60 80830 - 80802 - f 100 -13.5 -4.21351 | opp_overlap 80802 AAAGATCTTAACAAA GTTAATCAAAAAT TGT ATTTTTGATTAAC TTTAATTTCAGGATT TERM 61 80802 - 80830 + F 100 -13.5 -4.06903 | opp_overlap 80802 AAAGATCTTAACAAA GTTAATCAAAAAT TGT ATTTTTGATTAAC TTTAATTTCAGGATT BB0085 80983 - 81408 + | hypothetical protein TERM 62 82039 - 82020 - g 70 -6.5 -4.07993 | overlap 82018 82036 82037 CAAAGAGCAAAAAGA GCAATTG AAATAG CAATTGC CGGTGGGCATAACAT BB0086 81405 - 82940 + | hypothetical protein TERM 63 82962 - 82944 - T 81 -7.4 -4.77757 | opp_overlap 82943 82945, overlap 82945 CTTGAAAAATGAAAA CCCCCAAA ATA TTTGGGGT CTTAATACTAAAATT TERM 64 82945 - 82961 + T 90 -10.9 -3.17229 | opp_overlap 82945 82944, overlap 82943 TTGAAAAATGAAAAC CCCCAAA ATA TTTGGGG TCTTAATACTAAAAT TERM 65 82961 - 82945 - T 93 -10.9 -3.4557 | opp_overlap 82943 82945, overlap 82944 TTGAAAAATGAAAAC CCCCAAA ATA TTTGGGG TCTTAATACTAAAAT BB0087 83920 - 82970 - | L-lactate dehydrogenase (ldh) BB0088 85720 - 84041 - | GTP-binding protein LepA BB0089 86854 - 85880 - | hypothetical protein BB0090 87360 - 86926 - | V-type ATP synthase subunit K BB0091 89203 - 87377 - | V-type ATP synthase subunit I TERM 66 88531 - 88547 + g 75 -3.7 -5.40625 | opp_overlap 88530, overlap 88532 AAACTTGCTCAAACT CTACGAT TTG ATCGTAA TTTTTTATCTCATCT TERM 67 88532 - 88546 + g 71 -7.2 -3.82748 | opp_overlap 88530, overlap 88531 AACTTGCTCAAACTC TACGAT TTG ATCGTA ATTTTTTATCTCATC BB0092 89814 - 89200 - | V-type ATP synthase subunit D BB0093 91115 - 89811 - | V-type ATP synthase subunit B BB0094 92864 - 91137 - | V-type ATP synthase subunit A TERM 68 92476 - 92491 + g 82 -5.4 -5.47399 | opp_overlap 92476, overlap 92477 92486 CCTGCAATAACGATA TCTCCA ACTT TGGAGG TTTTTTTAAAATTCC BB0095 93423 - 92878 - | hypothetical protein TERM 69 93438 - 93428 - R 71 -5.4 -4.7033 | GAATCTAACACAAAA GTCT CCT AGAC CACTTTTATAACTTC BB0096 94035 - 93433 - | V-type ATP synthase subunit E BB0097 94605 - 94219 - | hypothetical protein BB0098 96953 - 94611 - | recombination and DNA strand exchange inhibitor protein TERM 70 95069 - 95088 + g 73 -8 -3.43414 | opp_overlap 95068 AATCTGCAACTACAT TTCTCTTA TTGT TAAGAGAA TTCACTTTATTTGTC TERM 71 95208 - 95226 + g 70 -7.6 -3.49924 | TTCTAAAACTTTTCT TGAATTTT TTA AAAATTCA TTCTGCTCATTTAAA TERM 72 96591 - 96577 - G 81 -7.2 -4.76802 | TTTAAAAATAATAAA TCAGAT AAA ATCTGA ACATTAAGATGCTTG TERM 73 96681 - 96699 + g 73 -4.6 -5.14626 | opp_overlap 96680, overlap 96680 AATATCTCTCAAATT TTCAATAG AAA CTCTTGAA TTTTCTTTTAATAAT BB0099 97866 - 96943 - | hypothetical protein TERM 74 97362 - 97337 - G 70 -4.9 -4.63932 | gap 1, opp_overlap 97337 97332 97331 GACTGGCCAATAAAA GAAGTTCTTGAA TTT TTCAA-AACCTC TTTTACTTCTTTAAT BB0100 98648 - 97863 - | glutamate racemase (murI) TERM 75 98703 - 98687 - H 71 -6.7 -4.18351 | AAAGTAAAGTATAAA TATTAAC AAA GTTAATA TCAAGAATTAAAATA asnC 98805 - 100205 + | asparaginyl-tRNA synthetase BB0102 100228 - 100749 + | hypothetical protein BB0103 101339 - 100746 - | hypothetical protein TERM 76 101510 - 101488 - R 100 -8.5 -5.80951 | ATGTAAAACAAAAAA GGGCTAAGA TCAAC TCTTAACCC AAAACTAAAATTTAC BB0104 102976 - 101525 - | periplasmic serine protease DO (htrA) BB0105 103771 - 103016 - | methionine aminopeptidase (map) BB0106 105473 - 103764 - | hypothetical protein TERM 77 104841 - 104859 + gr 74 -6.1 -4.45259 | opp_overlap 104840 104838 104841, overlap 104847 TATATACAAAAGCAT TGCATTT ATTAA AAATGCA TTATTTTTAAGATTT nusB 105855 - 105418 - | transcription antitermination protein NusB BB0108 106894 - 105884 - | basic membrane protein BB0109 108170 - 106974 - | acetyl-CoA C-acetyltransferase (fadA) TERM 78 108333 - 108323 - g 71 -2.6 -5.40072 | opp_overlap 108314 108323 TGCGGTTTAAAAAAA TATT TTT AATA ATATTTATAATTTCT TERM 79 108471 - 108484 + G 70 -5.3 -4.46215 | TTTTTTTGATGACTT GAGAA GTGG TTCTC TTATTTTTACCTATG BB0110 108307 - 109671 + | hypothetical protein BB0111 111042 - 109675 - | replicative DNA helicase (dnaB) TERM 80 109733 - 109748 + g 73 -9 -2.50489 | opp_overlap 109731, overlap 109732 109732 AAAAATAATATATCT GCCCTA CCTG TAGGGC CATTTCTATGTTTTG TERM 81 110294 - 110314 + g 71 -4.1 -5.14949 | GCTGTCATTTCAAGG GAAAAAAAT CCT ACTTTTTTC TTTTCTTCTTTTCTT TERM 82 110676 - 110688 + g 72 -6.3 -4.28049 | TTAAAATGCTTCTGC GAACA CTC TGTTC TTTTACAATTTTCGC rplI 111567 - 111046 - | 50S ribosomal protein L9 rpsR 111875 - 111585 - | 30S ribosomal protein S18 BB0114 112338 - 111889 - | single-stranded DNA-binding protein (ssb) rpsF 112769 - 112350 - | 30S ribosomal protein S6 BB0116 114633 - 112909 - | PTS system, maltose and glucose-specific IIABC component (malX) TERM 83 112956 - 112968 + g 79 -3.4 -5.57729 | TTTTTCCTGATTTAC CTTG CTTTT CAAG TTTTTTGTCTTCTTT TERM 84 114114 - 114100 - G 71 -2.8 -5.42259 | opp_overlap 114100, overlap 114102 GCACTCTGAAAAAAA CACAAA AGG TTTGGG TAGCTTCATATTATA TERM 85 114537 - 114549 + g 71 -7.7 -3.61889 | opp_overlap 114537 114536 GTAAAATAGAAATAG GCACT CGT AGTGC TTTAGAAAATTTTTG BB0117 114807 - 115508 + | hemolysin III (yplQ) BB0118 116818 - 115505 - | zinc protease, putative cdsA 117763 - 116825 - | phosphatidate cytidylyltransferase BB0120 118370 - 117678 - | hypothetical protein BB0121 118929 - 118375 - | ribosome releasing factor (frr) TERM 86 118894 - 118884 - G 70 -5.4 -4.48221 | opp_overlap 118884 TATCAAGTGATAAAA GAAC CTT GTTC ATCTTTTCATCTAGA tsf 119803 - 118964 - | elongation factor Ts rpsB 120589 - 119807 - | 30S ribosomal protein S2 TERM 87 120366 - 120390 + g 70 -8.7 -2.62946 | overlap 120365 ATTATCTCACTAGCT TGCTTTTTGGT TCC AACAAAAAGCA CCTTTTTGCCATCTT BB0124 121082 - 120804 - | hypothetical protein TERM 88 121054 - 121040 - G 80 -5.8 -5.0917 | TTACCAAAAAAGAAA TAACAA TGT TTGTTA AAATCAAATGAGAAA BB0125 121823 - 121101 - | hypothetical protein BB0126 122491 - 121880 - | hypothetical protein rpsA 124152 - 122491 - | 30S ribosomal protein S1 BB0128 124814 - 124149 - | cytidylate kinase (cmk-1) TERM 89 124578 - 124531 - G 73 -3.1 -5.3798 | gap 1, opp_overlap 124536 124554, overlap 124536 TAAGAAGAATAAAAA GAAACTTGAAAATCA-ATCTTA TCGTT TAAAATTTGATTTTCAACATTC TCTCCATTAAGCAAA BB0129 125547 - 124798 - | hypothetical protein BB0130 126301 - 125534 - | hypothetical protein recA 127413 - 126316 - | recombinase A BB0132 130132 - 127427 - | fused transcript cleavage factor/uncharacterized domain-containing protein TERM 90 129642 - 129625 - G 78 -5.7 -4.89567 | opp_overlap 129625 TTCTAAAATAGAAAA TTGATTT TTGC AAATCAA TAGTTTCATAATAAG BB0133 131114 - 130170 - | hypothetical protein TERM 91 131709 - 131697 - g 72 -4.9 -4.82154 | AACCTATATGAAAAA TTGTT CCC AACAA TTAAAGCAATACCCG BB0134 131277 - 132425 + | hypothetical protein hisS 133845 - 132472 - | histidyl-tRNA synthetase TERM 92 133218 - 133230 + g 71 -7.7 -3.69621 | opp_overlap 133222 CTTTTTCAATCTCAA GAAGC AAA GCTTC TTTAACCTTATCAAT TERM 93 133812 - 133829 + g 70 -5.7 -4.3586 | opp_overlap 133811 133812 CCTTCGGTAAATAAT CTTTAAA GCCT TTTAAAG TTTTAATATCCATCA BB0136 133975 - 135864 + | penicillin-binding protein (pbp-1) BB0137 137766 - 135874 - | long-chain-fatty-acid CoA ligase TERM 94 136902 - 136914 + g 70 -6.3 -4.10791 | opp_overlap 136902 136901 TTCTAGAAATAAACG GTTTC TTA GAAAC TTCTTTGTAAATATT TERM 95 137096 - 137084 - G 71 -7.7 -3.51708 | GACCTTTGAAAGGAA TGCCA AAT TGGCA AAATGCACATAAATA BB0138 138089 - 137880 - | hypothetical protein BB0139 138823 - 138434 - | hypothetical protein BB0140 141960 - 138850 - | acriflavine resistance protein (acrB) TERM 96 140864 - 140829 - G 70 -5.6 -4.30559 | opp_overlap 140835 140836 140838 AACAAAAGGTCAAAA CAATTGCTATTGGAAT AGAA ATTCCAATAATTATTG TGGCCCTAAAGCTTC TERM 97 140836 - 140857 + g 74 -8.9 -2.87622 | opp_overlap 140829, overlap 140835 140838 GGTCAAAACAATTGC TATTGGAAT AGAA ATTCCAATA ATTATTGTGGCCCTA TERM 98 141176 - 141196 + g 71 -7 -3.85698 | GCAATATCTTTGAGT TTTATCTC AATAG GAGATAAA TTTATGCCAGAAGAA BB0141 142935 - 141979 - | membrane fusion protein (mtrC) TERM 99 142009 - 142024 + g 70 -6.2 -4.16842 | GGCTGAAAGACCCTC TTTGGT ATCT ACCAAA TTTATTAGAGATCCA TERM 100 142905 - 142892 - G 71 -2.5 -5.52347 | opp_overlap 142892, overlap 142885 142884 AATAAAACTAAAAAA TATTT TTTT AAATA TAAATTAATATTAAA BB0142 144266 - 142944 - | hypothetical protein TERM 101 143519 - 143503 - G 74 -6.7 -4.29396 | opp_overlap 143490, overlap 143477 AATGATTCATTAAAA TTTAATG CCT CATTAAA TAGAGAAAAATCTAT TERM 102 144202 - 144185 - G 73 -4.3 -5.17744 | opp_overlap 144185 AGACAGTAATAAAAA TTAAAAA AATT TTTTTAA TTTGAAGCCCCCTTA BB0143 144307 - 144597 + | alpha-hemolysin (hlyA) BB0144 145458 - 144586 - | glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein (proX) TERM 103 144670 - 144660 - G 73 -8.2 -3.37761 | opp_overlap 144658 144660 TTTCAACAAATTCAA CCGC ATT GCGG TATTCTTTGCCTGGC TERM 104 144660 - 144670 + g 74 -8.2 -3.57185 | opp_overlap 144660, overlap 144658 TTTCAACAAATTCAA CCGC ATT GCGG TATTCTTTGCCTGGC BB0145 146370 - 145471 - | glycine betaine, L-proline ABC transporter, permease protein (proW) BB0146 147495 - 146377 - | glycine betaine, L-proline ABC transporter, ATP-binding protein (proV) TERM 105 147616 - 147591 - R 100 -13.5 -5.95539 | opp_overlap 147591 147596 147614 TCTGAAATAAAAAAA CAAAAGATCCT TTAA AGGATCTTTTG TTAATACAATTTATA TERM 106 147591 - 147616 + r 100 -13.5 -3.21194 | opp_overlap 147591, overlap 147596 147614 TCTGAAATAAAAAAA CAAAAGATCCT TTAA AGGATCTTTTG TTAATACAATTTATA TERM 107 147596 - 147611 + r 83 -7.6 -4.71828 | opp_overlap 147591, overlap 147591 AATAAAAAAACAAAA GATCCT TTAA AGGATC TTTTGTTAATACAAT BB0147 148659 - 147649 - | flagellin BB0148 148710 - 148805 + | hypothetical protein fliD 150783 - 148786 - | flagellar hook-associated protein FliD BB0150 150897 - 150805 - | hypothetical protein TERM 108 150868 - 150855 - G 74 -2.5 -5.68023 | GTATAATTAAAAAAA TAAAA TAAA TTTTA AAAACATGAATTCTT TERM 109 150941 - 150912 - H 84 -5.2 -5.79595 | opp_overlap 150918 CTTTAAAATAAAAAA TATAAGCTTTAA AAAAGA TTAATGCTTATA GTAAAATAAAATAAA TERM 110 151362 - 151384 + G 74 -4.8 -5.00895 | opp_overlap 151382 AGGGAGCTAAAATTT TGGGACTTCA CCT TGAAGGACCA TTTTTCTCTCCTGAA BB0151 150974 - 152179 + | N-acetylglucosamine-6-phosphate deacetylase (nagA) nagB 152206 - 153012 + | glucosamine-6-phosphate deaminase BB0153 153719 - 153075 - | superoxide dismutase (sodA) BB0154 156400 - 153701 - | preprotein translocase subunit SecA TERM 111 156427 - 156439 + H 70 -6.3 -4.21908 | opp_overlap 156426 156427 ATTCTCCTAAATAAT TGACT TAA AGTCA TTTTAAATAATAATA TERM 112 157478 - 157442 - g 73 -8.2 -3.36349 | overlap 157443 GAAATTAGACAGCAA GGGCTCAATTAAAG AACAAATAG CTTTAATTGAGCCT CCAAATTTAATGTTT TERM 113 157477 - 157443 - g 93 -11.7 -2.61086 | overlap 157442 AAATTAGACAGCAAG GGCTCAATTAAAG AACAAATAG CTTTAATTGAGCC TCCAAATTTAATGTT BB0155 156462 - 157598 + | hypothetical protein TERM 114 157797 - 157779 - g 73 -3.2 -5.4593 | overlap 157782 CGAAAATAATAAAAA TAATATCA AAA TGATAATA AGCTACAAGCAAGAC TERM 115 157794 - 157782 - g 70 -4.9 -4.74161 | overlap 157779 AAATAATAAAAATAA TATCA AAA TGATA ATAAGCTACAAGCAA BB0156 157627 - 158061 + | hypothetical protein TERM 116 158146 - 158164 + G 70 -5.4 -4.51799 | overlap 158146 158148 158150 TAGAAAGAATAAGCT TTTTCAAA ATT TTTGAAGA TTTTGTAAATTTAAT BB0157 158058 - 158474 + | hypothetical protein BB0158 158628 - 159344 + | antigen, S2, putative BB0159 159368 - 160042 + | hypothetical protein TERM 117 160754 - 160768 + G 72 -7.2 -3.97019 | opp_overlap 160751 CACAATTTAATATGG TAAGAC CAG GTCTTA TTCTTTACGGTTACT BB0160 160090 - 161208 + | alanine racemase (alr) BB0161 162864 - 161200 - | hypothetical protein TERM 118 162797 - 162787 - G 71 -2.6 -5.52023 | AGCACTAATAAAAAA TATT ATA AATA ACATGAATAAATTCC BB0162 162878 - 163045 + | hypothetical protein BB0163 164820 - 163072 - | hypothetical protein TERM 119 164072 - 164058 - G 73 -2.9 -5.49809 | overlap 164066 164067 GAAACTCTAAAAAAA CAAAA TAATT TTTTG AAAAAGTAATTCCTT BB0164 165914 - 164901 - | Na+/Ca+ exchange protein, putative TERM 120 165264 - 165251 - G 75 -5.3 -4.89233 | CACTAACATTAAAAA CATTG TTGG CAATG TAAAGAGCTCCATCT BB0165 167759 - 165915 - | hypothetical protein TERM 121 166199 - 166189 - G 77 -5.4 -5.06414 | TTTGTGTAATAAAAA TTGC TTG GCAA AAAATCATCAGTATA TERM 122 166602 - 166624 + g 84 -3.4 -5.7946 | ATCAACTTTTTTAAT CAAATGAGCC CAA GGTTTATTGG TTTTTTTATTCCAAA TERM 123 167174 - 167128 - G 74 -6.3 -4.54727 | TTTTTGAAAGGAAAA GATATTTTTTTAATAAATC CACTTTTCT GACTAATTAAAAAAATATC TCCATAAACTCCAGA BB0166 169399 - 167879 - | 4-alpha-glucanotransferase (malQ) TERM 124 168253 - 168229 - G 74 -8.8 -3.25729 | TATAATTATGAGGAA GATTTTGATT GCTTG AATCAAAATC AAAGGCAAGATTCAT TERM 125 170561 - 170530 - g 95 -12.4 -3.27158 | overlap 170528 170526 GATTGGAAGAAGAGA TGCACGAGCTATCT GAAA AAAGAGCTCGTGCA ATTGGAAATTATTTA BB0167 169539 - 170708 + | outer membrane protein (tpn50) TERM 126 170714 - 170724 + T 78 -5.4 -5.25154 | opp_overlap 170709 170714 AAATAACTAACTTAA GATG TAT CATC TTTTGTTCTTTTTTT BB0168 171097 - 170720 - | dnaK suppressor, putative TERM 127 171365 - 171349 - g 81 -7.3 -4.65168 | overlap 171340 AGTAGAGCTTAAAAA CAAGCAC ATT GTACTTG CCCATCTATCTGGCA infA 171212 - 171484 + | translation initiation factor IF-1 BB0170 173580 - 171532 - | hypothetical protein TERM 128 172363 - 172351 - GT 79 -3.5 -5.68438 | opp_overlap 172345 172351 GTATGAAACAAAAAA TAAAA AAG TTTTA TTTTTATAATTCAAA BB0171 174116 - 173529 - | hypothetical protein TERM 129 173675 - 173687 + gr 95 -4.7 -5.95946 | AGGAATTCAAACTAT CGCGC ACC GCTCG TTTTTTTATTATTGC BB0172 175138 - 174098 - | hypothetical protein TERM 130 174407 - 174394 - GR 91 -8.1 -4.93877 | TTTGATTAAATAAAA CGGGA TTAC TCCCG CCAATCCCAACCACA TERM 131 174588 - 174561 - GR 71 -6.4 -4.02905 | gap 1, opp_overlap 174561 174585, overlap 174559 174564 ATTACACTAAAAACA GCATCTCCTAAAA AAC TTCCAGGAGA-GC TTATTAAATCAGGCT TERM 132 174879 - 174865 - GR 75 -7.2 -4.15044 | TTTGCCCCCAAGAAA TATCCA AAA TGGATA AAATTAAAAAAATCA BB0173 176106 - 175081 - | hypothetical protein TERM 133 175821 - 175831 + gr 71 -5.4 -4.62085 | opp_overlap 175821, overlap 175818 CAGCACCAGCACTAA GATG TAT CATC TTCTTTTTTGAAACT BB0174 176974 - 176069 - | hypothetical protein BB0175 177853 - 176978 - | hypothetical protein BB0176 178881 - 177868 - | methanol dehydrogenase regulator (moxR) BB0177 179543 - 178917 - | glucose inhibited division protein B (gidB) BB0178 181423 - 179540 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 134 180644 - 180663 + g 78 -2.8 -5.85737 | TGATAGGTGCATATT CTCGCTAA TTAT TTCGTGAG TTTTTTTATTAGTAT TERM 135 181076 - 181062 - G 72 -7.2 -3.91506 | opp_overlap 181061, overlap 181060 GTATCCTGAAAAAGA TCAAGA TTG TCTTGA CGTTCTAAAGTTTCT trmE 182802 - 181408 - | tRNA modification GTPase TrmE BB0180 182886 - 183380 + | flagellar protein, putative TERM 136 184957 - 184933 - g 71 -4.4 -4.86621 | overlap 184947 ATCGGGAATTAAAAA TCCAACAAAT GAAAT ATCTATTGGA GATAACCAAGCAGCA flgK 183392 - 185275 + | flagellar hook-associated protein FlgK BB0182 185278 - 186552 + | flagellar hook-associated protein FlgL BB0183 186554 - 186946 + | flagellar assembly protein FliW BB0184 186949 - 187194 + | carbon storage regulator (csrA) BB0185 187831 - 187178 - | hypothetical protein BB0186 188237 - 187824 - | hypothetical protein BB0187 188494 - 188234 - | hypothetical protein rplT 189055 - 188708 - | 50S ribosomal protein L20 TERM 137 188982 - 188994 + g 87 -4.9 -5.81032 | overlap 188972 CTCTTTTTTGTACCC CAAAA TCC TTTTG TTTTTTTTAAAATTC rpmI 189276 - 189076 - | 50S ribosomal protein L35 infC 189859 - 189299 - | translation initiation factor IF-3 TERM 138 189983 - 189971 - g 72 -4.9 -4.93177 | CAAAAAGTAATAAAA TCAAT AAT ATTGA TAAAACAAATATCCA BB0191 189949 - 190044 + | hypothetical protein TERM 139 190558 - 190541 - g 76 -4.1 -5.52347 | opp_overlap 190555 AAGAAAATTAAAAAA TGCCAAA AATA CTCGGCA AAAGAATACAAAATT BB0192 190064 - 190717 + | hypothetical protein TERM 140 191037 - 191001 - g 70 -6.1 -4.25676 | opp_overlap 190993, overlap 190993 191031 AACGAAATTCTAAAA GAGAAAATTTTTTATCT ATC AAAAATAAAATTTTCTC TAAAAAAATCTATTG TERM 141 191080 - 191046 - g 91 -6.6 -5.40072 | opp_overlap 191046 TTTTCTCTAAAAAAA TCTATTGACTTTCTGC TTA ACGAAAAATCAATAGA TTTGCAAAAAACATT TERM 142 191122 - 191097 - g 73 -8.5 -3.08977 | overlap 191094 191092 TTGCAAAAAACATTA CTATTTAGAGA CAAA TCTCTAAATAA CGAAGACCTTGAATA TERM 143 191274 - 191236 - g 77 -4.9 -5.27335 | opp_overlap 191239 191242, overlap 191239 CTTCTCAAATAAAAA CAATAATATTATTCTCT TTAAG AGATAATAATATTATTT TAAAAAAGATACTAA TERM 144 191271 - 191239 - g 79 -6.6 -4.72696 | opp_overlap 191239 191242, overlap 191236 CTCAAATAAAAACAA TAATATTATTCTCT TTAAG AGATAATAATATTA TTTTAAAAAAGATAC TERM 145 191239 - 191271 + G 75 -7.3 -4.08216 | opp_overlap 191239 191236, overlap 191242 CTCAAATAAAAACAA TAATATTATTCTCTT TAA GAGATAATAATATTA TTTTAAAAAAGATAC BB0193 190719 - 191459 + | hypothetical protein BB0194 192327 - 191518 - | hypothetical protein TERM 146 191943 - 191955 + g 77 -7.7 -4.08919 | opp_overlap 191942 CAGCCAAATACAATT GCTCT TCA AGAGC TTTAATTTGAAATTT BB0195 193463 - 192324 - | cell division control protein 27, putative TERM 147 193355 - 193321 - G 78 -10.2 -2.69964 | opp_overlap 193328 193330 193342, overlap 193294 193291 193330 TTTTCAAGGATATCA GAAAATAAACTTTCTG CTT CAGAAAGTCTTTCTTC TTTGATCAACTGATA TERM 148 193328 - 193348 + g 76 -6.9 -4.60258 | opp_overlap 193321 193330, overlap 193330 193342 GGATATCAGAAAATA AACTTTCTG CTT CAGAAAGTC TTTCTTCTTTGATCA TERM 149 193330 - 193346 + g 87 -9.5 -3.89937 | opp_overlap 193330 193321, overlap 193328 193342 ATATCAGAAAATAAA CTTTCTG CTT CAGAAAG TCTTTCTTCTTTGAT TERM 150 193346 - 193330 - G 100 -9.5 -4.81357 | opp_overlap 193328 193330 193342, overlap 193321 ATATCAGAAAATAAA CTTTCTG CTT CAGAAAG TCTTTCTTCTTTGAT prfA 193800 - 194873 + | peptide chain release factor 1 BB0197 194876 - 195736 + | protoporphyrinogen oxidase, putative BB0198 195693 - 197696 + | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (spoT) TERM 151 199115 - 199089 - g 93 -11.2 -3.44622 | CATTTGGATAATCAA TTTTGTATTAAT AAC ATTAATACAAAA TACTACATCAATCAA TERM 152 199837 - 199815 - g 84 -3.6 -5.9218 | overlap 199817 199827 TACAGAAGAAAAAAA TATAAAAATA AAT TATTCTTACA AAATAAAATATTCAG BB0199 197686 - 199950 + | hypothetical protein BB0200 201035 - 199965 - | D-alanine--D-alanine ligase (ddlA) BB0201 202578 - 201052 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) TERM 153 202036 - 202066 + g 83 -10 -3.27408 | overlap 202035 AATTGCATATTGAGC TTCATTTTTAACCA TGG TGCTTAAAAATGAA TGTATTTCCGTAGAC TERM 154 203359 - 203322 - g 100 -13.8 -3.5627 | gap 1, opp_overlap 203317 203330, overlap 203325 203330 203346 AGACTAGCTCCCAAA TGACTAAAGAGAGCATA AAAAA TATGCTCTCTTTAG-CA GGAAGTTTAGGAATT TERM 155 203357 - 203325 - g 100 -16.6 -2.91144 | opp_overlap 203317 203330, overlap 203322 203330 203346 CTAGCTCCCAAATGA CTAAAGAGAGCATA AAAAA TATGCTCTCTTTAG CAGGAAGTTTAGGAA TERM 156 203352 - 203330 - g 95 -10.7 -3.8901 | opp_overlap 203317 203330, overlap 203325 203322 203346 TCCCAAATGACTAAA GAGAGCATA AAAAA TATGCTCTC TTTAGCAGGAAGTTT TERM 157 203330 - 203352 + G 90 -10.7 -3.5394 | opp_overlap 203330 203325 203322 203346, overlap 203317 TCCCAAATGACTAAA GAGAGCATA AAAAA TATGCTCTC TTTAGCAGGAAGTTT BB0202 202850 - 204088 + | hemolysin, putative BB0203 204137 - 205072 + | lambda CII stability-governing protein (hflK) TERM 158 206017 - 206047 + G 83 -8.5 -4.29508 | opp_overlap 206026 AACAGACATGGATTT CTTTCAATATCTT CACAA AAGAAATTGAAAG TTTATTAGTATAAAT BB0204 205073 - 206044 + | lambda CII stability-governing protein (hflC) TERM 159 206048 - 206061 + F 73 -2.5 -5.65927 | opp_overlap 206048 AAAAGAAATTGAAAG TTTAT TAGT ATAAA TTTTTTCTTTAAATA TERM 160 207729 - 207719 - g 80 -4 -5.69793 | AGAGCAAACAAAAAA CAAA AAA TTTG ACATTAAAATGCTAG TERM 161 207829 - 207815 - g 72 -5.8 -4.53495 | CAAAAAAAATAATAA TGAAAA TCT TTTTCA AGCTGCTGTTCTGGA BB0205 206529 - 208106 + | hypothetical protein BB0206 208653 - 208084 - | hypothetical protein TERM 162 208323 - 208302 - G 71 -2.4 -5.4588 | opp_overlap 208306, overlap 208295 TAAAATCATAAAAAA GATCTTTT TTACTC AAAAAATC CTCTGCTCTTTGAAA TERM 163 208356 - 208342 - G 80 -5.8 -5.00616 | opp_overlap 208330 TGCTCTTTGAAAAAA GAATTT ATA AAATTC CTCAACAAAACTAAA TERM 164 208648 - 208630 - G 89 -6.2 -5.4433 | overlap 208624 ATACATAAATAAAAA TTTTAAAA CAA TTTTAAAA AACAATGAATATATA TERM 165 209259 - 209249 - g 73 -5.4 -4.70266 | AACATTATTGAAAAA CCAA AGA TTGG AAGTGAGCCTAGCAA BB0207 208706 - 209542 + | UTP--glucose-1-phosphate uridylyltransferase (gtaB) TERM 166 210057 - 210037 - g 86 -7.1 -5.13648 | overlap 210050 GAAACAGAAATAAAA TTAAAATAT TAA ATATTTTAA ATAAAAATTTAAAAT TERM 167 210073 - 210050 - g 75 -7 -4.10188 | overlap 210037 AATTAAAATATTAAA TATTTTAAAT AAAA ATTTAAAATA TCGACCAGAAAATCA BB0208 209529 - 211274 + | hypothetical protein TERM 168 211324 - 211343 + G 70 -3 -5.36689 | opp_overlap 211324, overlap 211319 TTATTTATTTTTAAA TAAAAATT ACAA GATTTTTA TTTTATTTTTAATTT TERM 169 211788 - 211766 - g 72 -3.4 -5.27938 | overlap 211771 ACTTCTAAAGAAAAA GAATACCAAA AAG CTTGGGACTC TTATACTATGGCTAT BB0209 211301 - 212068 + | hypothetical protein TERM 170 212666 - 212639 - g 74 -2.2 -5.58074 | overlap 212643 TAATGACCAAAAAAA TTTATTTAATTT GGAA AAACTAAAAAAA AATTTAAGTGGAAAA TERM 171 212869 - 212856 - g 73 -5.3 -4.64657 | TCAAATTCCCAAAAA GAAAG TGAG CTTTC TCCACCCAGTCAAAC BB0210 212061 - 215420 + | surface-located membrane protein 1 (lmp1) TERM 172 215705 - 215695 - g 71 -4 -5.12971 | AAGATTTAAGAAAAA TAGA AAC TCTA GGCTTTAGGGGAGAG BB0211 215427 - 217259 + | DNA mismatch repair protein (mutL) TERM 173 217526 - 217501 - g 100 -9.3 -5.96894 | opp_overlap 217501 ATTTAAACAAAAAAA TTTATATTCTT AAAA AAGAATATAAA TCTACTAGTAAATCA TERM 174 217501 - 217526 + G 77 -9.3 -2.83164 | opp_overlap 217501 ATTTAAACAAAAAAA TTTATATTCTT AAAA AAGAATATAAA TCTACTAGTAAATCA BB0212 217278 - 218312 + | hypothetical protein BB0213 219078 - 218425 - | hypothetical protein BB0214 219634 - 219056 - | translation elongation factor P (efp) BB0215 219797 - 220639 + | phosphate ABC transporter, periplasmic phosphate-binding protein (pstS) TERM 175 220681 - 220660 - f 100 -8.1 -6.4753 | TTAAAGAAAAAAAAA CTTGACTTA AGAT CAAGTCAAG TAATACAATTTAACA TERM 176 220778 - 220763 - g 72 -4.8 -4.855 | opp_overlap 220763 CAAAAAGAAAAATAA TTGAAA TTAT TTTCAA ATCTTTTATTCTTAT TERM 177 221432 - 221446 + G 100 -10 -4.82901 | CAGTATTAATGGTCG GAGGAG GCT CTCCTC TTTTTATAAAAAACA BB0216 220729 - 221637 + | phosphate ABC transporter, permease protein (pstC) BB0217 222192 - 223178 + | phosphate ABC transporter, permease protein (pstA) TERM 178 223481 - 223465 - g 72 -3.7 -5.19328 | overlap 223467 AGCTTAGAAGAAAAA TAGGAAT GGT ATTCCAA ACCCCTAACCCATTT TERM 179 223479 - 223467 - g 70 -6.3 -4.22377 | overlap 223465 CTTAGAAGAAAAATA GGAAT GGT ATTCC AAACCCCTAACCCAT BB0218 223179 - 223961 + | phosphate ABC transporter, ATP-binding protein (pstB) BB0219 224785 - 223964 - | gufA protein BB0220 226610 - 224826 - | alanyl-tRNA synthetase TERM 180 225648 - 225634 - G 95 -8.6 -5.11613 | opp_overlap 225634 225633 AGATCAGCTAAAAAA TGGGAT TTT ATCCCA AGTTTCTTTGCATAT TERM 181 225634 - 225648 + g 70 -8.6 -2.56231 | opp_overlap 225634, overlap 225633 AGATCAGCTAAAAAA TGGGAT TTT ATCCCA AGTTTCTTTGCATAT BB0221 227836 - 226610 - | flagellar motor switch protein (fliG-1) BB0222 228521 - 227814 - | glucose-6-phosphate 1-dehydrogenase, putative BB0223 228895 - 228542 - | hypothetical protein BB0224 229148 - 228864 - | hypothetical protein BB0225 229217 - 230224 + | tRNA-dihydrouridine synthase A BB0226 231491 - 230214 - | seryl-tRNA synthetase BB0227 231621 - 232322 + | hypothetical protein TERM 182 232358 - 232346 - g 74 -4.9 -5.07011 | GACATAAATGAAAAA GAAAA AAA TTTTC AAACTAATTTCAAAA TERM 183 232479 - 232469 - g 75 -5.4 -4.86731 | opp_overlap 232469 TTCTTTTAAAGAAAA TGCA TTT TGCA TAGCTTTCAAGACAA TERM 184 234512 - 234500 - g 72 -3.5 -5.20154 | AGACAATTTAAAAAA TAAAA TAA TTTTA AAAAACAATCTATCT BB0228 232338 - 235253 + | hypothetical protein rpmE2 235534 - 235289 - | 50S ribosomal protein L31 type B rho 237142 - 235595 - | transcription termination factor Rho BB0231 237629 - 237222 - | hypothetical protein TERM 185 237460 - 237446 - G 72 -7.2 -3.99405 | TTAATGTATCACAAA TTACCA CAT TGGTAA TAACCTTACTATTCT TERM 186 237527 - 237493 - G 71 -8 -3.25358 | CCAATAAAAAGCACA CCCCCTTTTGAAGATA TTT CACCTTCAAAAGAAGA ATCAAGATACAAAGT BB0232 237956 - 237630 - | hbbU protein rpsT 238226 - 237969 - | 30S ribosomal protein S20 TERM 187 238104 - 238127 + g 70 -3.2 -5.25799 | gap 1 TTCGTCTTTCTTACC CGCTTTTATCA TGT TGATACA-GCG TTTTTCTATTGTTTT BB0234 239128 - 238301 - | hypothetical protein TERM 188 238720 - 238735 + g 70 -6.2 -4.07568 | ATAAATAATATCTTA TTGGAA AATT TTCCAA TTTTGGGACAAACAG BB0235 240250 - 239144 - | translation-associated GTPase TERM 189 239791 - 239801 + g 85 -3.2 -6.04419 | TAATTTTCTTATCAG TGCT TTT GGCA TTTTTTTCTTGTTTT BB0236 242289 - 240283 - | hypothetical protein TERM 190 242778 - 242789 + Gr 71 -4.4 -4.89729 | AAAATAAAACGATGA GCAT AACA ATGC TTTTTACATTTTATG BB0238 244731 - 243943 - | hypothetical protein lnt 242438 - 244003 + | apolipoprotein N-acyltransferase BB0239 245394 - 244777 - | deoxyguanosine/deoxyadenosine kinase(I) subunit 2 (dck) TERM 191 246472 - 246504 + G 75 -7.1 -4.09685 | opp_overlap 246468 246484 ATCTAAGTATAGTTA TTGTACCAATAATTG GCC CAATAATTGGAGCAA TTTTGGGAGCTACAA BB0240 245790 - 246554 + | glycerol uptake facilitator (glpF) TERM 192 247731 - 247717 - g 70 -8.6 -2.66481 | opp_overlap 247720, overlap 247720 247722 CAAAAGCTCACATTA CAAGAG CTG CTCTTG AGAGCATCGCATTTC TERM 193 248041 - 248021 - g 74 -4.8 -5.09426 | TTCAATGCCAAAAAA TCAAAAAG AAAAG CTTCTTGA GAATTGGAACAAAGC BB0241 246597 - 248102 + | glycerol kinase (glpK) BB0242 248156 - 248434 + | hypothetical protein TERM 194 248573 - 248559 - g 72 -7.2 -3.98231 | opp_overlap 248559 248558 248568, overlap 248557 248568 AACAAAATTAAAAGA TCTTGA AAA TCAAGA ATTTGATCTTATAAT TERM 195 249685 - 249674 - g 76 -4.4 -5.28826 | AAATGGCAGAAAAAA CCTT GCTT AAGG CCATAGAACAAAATT BB0243 248506 - 250089 + | glycerol-3-phosphate dehydrogenase, anaerobic (glpA) TERM 196 250081 - 250095 + T 70 -4.4 -5.0916 | opp_overlap 250080 250078 250081, overlap 250080 ATAAGTAAAAAATAT TTAATT TAA AATTAA TTTTTATATTAAACA TERM 197 250113 - 250131 + T 93 -9.6 -4.67038 | opp_overlap 250113 TTTATATTAAACAAA GGGATTGT TAA GCAATCCC TTTTAATTTTAAAAC TERM 198 250131 - 250113 - T 86 -8.9 -4.53602 | opp_overlap 250113 TTTATATTAAACAAA GGGATTG TTAAG CAATCCC TTTTAATTTTAAAAC BB0244 250670 - 250176 - | hypothetical protein BB0245 251211 - 250657 - | hypothetical protein BB0246 252237 - 251212 - | hypothetical protein TERM 199 252356 - 252344 - H 70 -4.9 -4.84017 | AACCTGGTACAAAAA TACTT AAT AAGTA CACAAAATTAAAGAG TERM 200 252502 - 252490 - g 72 -3.5 -5.33921 | AAATGAAGTAAAAAA TATAT TAG ATATA CCTAATTTAAACTTA TERM 201 252796 - 252782 - g 86 -7.2 -5.11475 | GAAAAAAACAGAAAA GCATAT TTT ATATGC AACATAAGCTATATA TERM 202 252988 - 252972 - g 77 -3 -5.64328 | AAGAAAAAAACAAAA TATCCC ACAGA GGAATA GCATTTTTAAAATTT BB0247 252434 - 253039 + | hypothetical protein TERM 203 253189 - 253205 + G 79 -6.7 -4.78848 | opp_overlap 253188 253189 253191 GAAATCAATGAGAAT GATAAAT GGG ATTTATC TTTTCTATTTGCAAA BB0248 253159 - 254931 + | oligoendopeptidase F (pepF) BB0249 254945 - 255649 + | phosphatidyltransferase BB0250 255646 - 256260 + | dedA protein (dedA) TERM 204 257456 - 257439 - g 76 -4.2 -5.46129 | overlap 257431 TAACAAATGAAAAAA TTCCAA TTTGGG TTGGAA GCTACGTACTAGGAA leuS 256463 - 258985 + | leucyl-tRNA synthetase TERM 205 259071 - 259098 + G 70 -8 -3.05596 | overlap 259076 CTTAATTACTATTTT TTTAGGATTTTT TTTG AAAAATCTTAAA TTCGATGCAAACATC TERM 206 260319 - 260306 - g 84 -3.9 -5.81032 | CAAGTGTAAAAAAAA CATTA AACC TAATG CAAAAAGAAATGGGG BB0252 259000 - 261303 + | hypothetical protein BB0253 263712 - 261292 - | ATP-dependent protease LA (lon-1) TERM 207 262652 - 262668 + g 76 -6.7 -4.61231 | overlap 262664 CCGTAATGAGTTTTA TCTAAAA TTT TTTTAGA TTTTTGCAAATCTAA TERM 208 262664 - 262683 + g 70 -6.6 -3.89881 | opp_overlap 262680, overlap 262652 262681 TTATCTAAAATTTTT TTAGATTT TTGC AAATCTAA TTTATCAAAATTAAT TERM 209 263520 - 263497 - G 87 -8.2 -4.6951 | opp_overlap 263500, overlap 263500 ATCATTCAAAACAAA TAAGGCAATG ATCC CATTGCCTTT CATAGCATAATCGAT TERM 210 263500 - 263517 + g 89 -9.9 -3.75169 | opp_overlap 263497 263500 ATTCAAAACAAATAA GGCAATG ATCC CATTGCC TTTCATAGCATAATC TERM 211 263517 - 263500 - G 91 -9.9 -4.44301 | opp_overlap 263500, overlap 263497 ATTCAAAACAAATAA GGCAATG ATCC CATTGCC TTTCATAGCATAATC TERM 212 264077 - 264065 - g 70 -7.7 -3.46629 | opp_overlap 264064 GCAATATAATATCAA TGCCT TTG AGGCA ACTTTACTTATAAAT TERM 213 265041 - 265031 - g 74 -4 -5.24551 | TGAAACTAACAAAAA TTTG CTC CAAA AATGCCTAAAAAGAC BB0254 263988 - 266114 + | single-stranded-DNA-specific exonuclease (recJ) TERM 214 266409 - 266393 - g 91 -6.7 -5.49568 | AAGGTAAAAGAAAAA TTCAAAT AGA ATTTGAA AATAAAAGCTACATC BB0255 266095 - 267051 + | hypothetical protein rpsU 267066 - 267275 + | 30S ribosomal protein S21 TERM 215 267285 - 267306 + T 74 -5.9 -4.72188 | AGATAGATCGCACAA GAGATGTTC AAAT GGATATCTC TTTATTTTAAATTAA BB0257 269676 - 267313 - | cell division protein, putative TERM 216 267563 - 267576 + g 77 -5.3 -5.09173 | opp_overlap 267563 TCATCATCAATATAA TTTGG AGAA CCAAA TTTTTTAACCTCTTC TERM 217 267732 - 267710 - G 70 -7.8 -3.44051 | TTTTCAGCACCAGAA GATCCAAGAA TTA TTCTCGAATC CATAGAGCTGGCCAC TERM 218 267769 - 267759 - G 70 -5.4 -4.51743 | CCACCATGAAAGAAA TCCT TGA AGGA AAATTGGCTTTTATT TERM 219 268063 - 268081 + g 71 -7.4 -3.74792 | opp_overlap 268065, overlap 268065 ATCAAGACACCATCT AAGAGCCT CTA AGGCTCTC TTTACATCTGTAATA TERM 220 268065 - 268079 + g 85 -10 -3.45231 | opp_overlap 268065, overlap 268063 CAAGACACCATCTAA GAGCCT CTA AGGCTC TCTTTACATCTGTAA TERM 221 268079 - 268065 - G 81 -10 -3.1332 | opp_overlap 268065 268063 CAAGACACCATCTAA GAGCCT CTA AGGCTC TCTTTACATCTGTAA TERM 222 268211 - 268197 - G 80 -5.8 -5.04385 | GAGATTTTGAAAAAA TAATTG AAG CAATTA AAGAATTCACACAAA uppP 270473 - 269673 - | undecaprenyl pyrophosphate phosphatase TERM 223 270221 - 270241 + g 82 -6.3 -5.06414 | opp_overlap 270239, overlap 270222 ATATTAATTTTAAGT TTGTTAAAT CAG ATTTAACAG TTTTTCTTAAAGAAA TERM 224 270222 - 270240 + g 71 -7.6 -3.63367 | opp_overlap 270239, overlap 270221 TATTAATTTTAAGTT TGTTAAAT CAG ATTTAACA GTTTTTCTTAAAGAA BB0259 272701 - 270488 - | hypothetical protein TERM 225 271960 - 271950 - GR 71 -4 -5.17054 | ACAAGATTTAAAAAA TTTG CAC CAAA ATACCTAGACTTATT BB0260 273647 - 272634 - | hypothetical protein TERM 226 272956 - 272972 + gH 78 -8.1 -3.98907 | opp_overlap 272953 272968, overlap 272966 272968 AAATCATGCAAATCT TCTTCTT CTA AAGAAGA TTCTTCTAATTTTTG BB0261 273854 - 275236 + | hypothetical protein BB0262 276496 - 275243 - | hypothetical protein TERM 227 275860 - 275886 + g 76 -8.2 -3.74658 | TAATATTTCTTACAT CTTTAATTTCAT TAA AAGAAATTAAAG TTTCACTGGTTATTT TERM 228 276347 - 276313 - G 71 -4.6 -4.96845 | opp_overlap 276313 276314, overlap 276309 AGAAAAATAAAGAAA CTTTTTTAAAAAAA TTGATTT TTTTTTTAAAGAAG TTCTTAATCTTAAAA TERM 229 276715 - 276698 - g 70 -2.1 -5.46629 | gap 1, opp_overlap 276698 AATATTTGAAAAAAA TTG-GATT GTA AATCACAA GTTTGCATATGGACT BB0263 276558 - 277064 + | signal peptidase I (lepB-3) BB0264 278565 - 277090 - | heat shock protein 70 (dnaK-1) BB0265 279058 - 278537 - | hypothetical protein BB0266 279386 - 279078 - | hypothetical protein TERM 230 279281 - 279295 + g 75 -5.8 -4.67635 | TAAATCTAGCATTTT GATTAA TTT TTAATC TTTTGTGCTTTTCAC BB0267 281311 - 279407 - | hypothetical protein TERM 231 281009 - 280994 - G 74 -4 -5.24129 | TTTCCTGATAAAAAA TTCACC ATCT GATGAA ATAACTTCTTTTTCA BB0268 281793 - 281314 - | hypothetical protein TERM 232 281489 - 281503 + g 78 -4.3 -5.45802 | opp_overlap 281489 281499, overlap 281483 281499 CTGATATTTTGAGAA TTCTC ATAAA GAGAA TTTTTATTTTGAAAA TERM 233 281499 - 281529 + g 73 -7.8 -3.70571 | opp_overlap 281489 281499 281523, overlap 281489 281483 281510 GAGAATTCTCATAAA GAGAATTTTTATTT TGA AAATCAAGATTCTC TTTAAAATCTTTATC BB0269 282687 - 281800 - | ATP-binding protein (ylxH-1) BB0270 283865 - 282699 - | flagellar biosynthesis regulator FlhF TERM 234 283761 - 283748 - G 82 -8.1 -4.45261 | opp_overlap 283747, overlap 283750 TAAATAAACCTAAAA TCCCC CCAT GGGGA ACGGTTTTATAAGTC flhA 285962 - 283869 - | flagellar biosynthesis protein FlhA TERM 235 285393 - 285405 + g 71 -2.7 -5.55698 | overlap 285394 ATAAAAATTGACTTC TGATT GTA AATCG TTTTTTTGCCTTGTA flhB 287089 - 285971 - | flagellar biosynthesis protein FlhB TERM 236 286077 - 286091 + g 70 -6.4 -4.25859 | opp_overlap 286077, overlap 286074 ACATTAGCATAAAGA GCTCTT GCA AGGAGC TTATTTTCCATTAAA BB0273 287898 - 287089 - | flagellar biosynthesis protein (fliR) BB0274 288173 - 287910 - | flagellar biosynthesis protein (fliQ) fliP 288946 - 288182 - | flagellar biosynthesis protein FliP BB0276 289583 - 288957 - | flagellar biosynthesis protein FliZ TERM 237 289589 - 289559 - G 84 -3.5 -5.77632 | overlap 289549 AAAACGATAAAAAAA CTAAAAATAAAAA TTTAT TATTCATTTTTAG TTTTAATTATCTCAG BB0277 289917 - 289576 - | flagellar motor switch protein (fliN) TERM 238 289727 - 289743 + g 86 -7.3 -5.09259 | opp_overlap 289718 ATAATAGTCCCTTCA GACATGC CAA GTATGTC TTTTATTTTGCGCTC fliM 291021 - 289963 - | flagellar motor switch protein FliM TERM 239 290610 - 290627 + g 73 -8.5 -3.07994 | opp_overlap 290603 290613 290620, overlap 290613 CAAAAAGCCTATCTA CAATAGC AAAT GCTATTG TTGGATCAACTTCAA TERM 240 291034 - 291058 + r 75 -8.9 -3.1247 | opp_overlap 291038, overlap 291021 291038 CATTTAAAATTCCTT TAAATTTAAAA TTC TTTTAAATTTA TTACATATCAAAAAT fliL 291595 - 291059 - | flagellar basal body-associated protein FliL motB 292426 - 291644 - | flagellar motor protein MotB TERM 241 291982 - 291998 + g 70 -8.1 -3.06261 | opp_overlap 291969 291987, overlap 291969 291985 AAGATGCTATTTTTT GAATAGA ATC TCTATTC TCTTCAAGCTTAACA TERM 242 292049 - 292037 - G 72 -3.4 -5.33848 | opp_overlap 292047 AGCAGAATCAAAAAA TGCA TCTGC TGCA AGAGATATTACAATA BB0281 293208 - 292426 - | flagellar motor rotation protein A (motA) TERM 243 293033 - 293017 - G 70 -3 -5.27335 | opp_overlap 293019, overlap 293011 TCTTCTAAAGAAAAA TCCCAA ATACG TTGGAA TTTTTTTTACAGCAA BB0282 293429 - 293205 - | flagellar protein (flbD) TERM 244 293454 - 293442 - R 70 -2.7 -5.60864 | CATATACTAAAAAAA CAATC TTA GATTA ATTTTTCAATCTTAC flgE 294780 - 293452 - | flagellar hook protein FlgE TERM 245 293729 - 293714 - G 78 -7.6 -4.33182 | opp_overlap 293724, overlap 293724 GGATTCATAAAAGAA GCAAGA GCAA TCTTGC CAAGATCTCGTCTTA flgD 295228 - 294785 - | flagellar basal body rod modification protein TERM 246 295038 - 295022 - G 80 -8 -4.1964 | opp_overlap 295022 CTCAAGAGCCGAAAA TTGCGC CATTT GCGCAA TAAATTCTTTATCCT BB0285 296426 - 295242 - | flagellar protein (flbC) TERM 247 296012 - 296024 + g 72 -3.5 -5.30616 | opp_overlap 296004 AACAAAGTTTTTCGA TTTTT TCA AAAAA TTTTTCTTTACCTAG BB0286 297051 - 296428 - | flagellar protein (flbB) BB0287 297469 - 297038 - | flagellar protein (flbA) TERM 248 297217 - 297196 - G 70 -6.7 -4.06678 | opp_overlap 297196 ATTTATCTACATAAA CATCATAAC ATTT GTTATAATG CTTTCTAAGCTCTTC BB0288 298776 - 297466 - | flagellum-specific ATP synthase (fliI) fliH 299715 - 298795 - | flagellar assembly protein H TERM 249 299494 - 299507 + g 72 -6.7 -4.09511 | overlap 299481 TTGAACTTCCTCTTT GGCAA GTTC TTGCC TTTTAGCAAGCTCTT fliG 300764 - 299730 - | flagellar motor switch protein G fliF 302489 - 300780 - | flagellar MS-ring protein TERM 250 301464 - 301450 - G 78 -8.6 -3.71607 | GTAATATCACTTAAA TCCTGA TAT TCAGGA GGGGTATTGCCTTCC fliE 302839 - 302504 - | flagellar hook-basal body protein FliE flgC 303309 - 302851 - | flagellar basal body rod protein FlgC flgB 303740 - 303333 - | flagellar basal body rod protein FlgB hslU 305141 - 303774 - | ATP-dependent protease ATP-binding subunit BB0296 305661 - 305113 - | ATP-dependent protease peptidase subunit BB0297 306618 - 305671 - | smg protein TERM 251 305984 - 305961 - G 71 -4.6 -4.8667 | overlap 305963 CATATGTTATAAAAA TAGCATCAGA CAGA CCTGATACCA ATCTATTTCTTTTGG BB0298 307317 - 306625 - | hypothetical protein BB0299 308532 - 307318 - | cell division protein FtsZ TERM 252 308301 - 308315 + g 80 -6.4 -4.82901 | GCCCTGCTGTAACTT TTGCTC CAA GGGCAA TTTTTATGGGAGCAA BB0300 309780 - 308539 - | cell division protein (ftsA) BB0301 310523 - 309780 - | cell division protein (divIB) BB0302 311653 - 310559 - | cell division protein (ftsW) TERM 253 311433 - 311459 + g 73 -9 -2.71712 | opp_overlap 311416 311432 311454, overlap 311432 311435 311435 AATACAGGAAATATT GATTTTTTTAAA AAA TTTAAAGAAATC CTTTCAAAAACAAGA BB0303 312715 - 311660 - | phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) TERM 254 311923 - 311901 - G 70 -6.2 -4.19735 | overlap 311917 CTTTTTAAAATCAAA GCTGCCATTC CAA GAATGGCCCC CAAAGCCAGACTACC TERM 255 312334 - 312317 - G 77 -2.1 -5.80817 | gap 1 GCCAACAGAAAAAAA GGA-AAAT ATT ATTTGTCC ATAAATCTTAAATCG TERM 256 312464 - 312454 - G 71 -4 -5.12785 | opp_overlap 312454 TAATCAAAAAATAAA CATT TAA AATG TTGCTCCAAAATACT BB0304 314123 - 312729 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (murF) TERM 257 313459 - 313477 + g 73 -9 -2.53382 | opp_overlap 313457 313474 TTTTTGCCAATTATT TTGCTTTT TTC AAAAGCAA TAGCTTGCAACTCCT BB0305 314427 - 314146 - | hypothetical protein TERM 258 314415 - 314429 + g 73 -2.9 -5.42862 | TAAATTCAATCTTAC TTATG CTGTT CATAA TTTTTTTACAACTCT BB0306 315314 - 314424 - | hypothetical protein TERM 259 315316 - 315335 + r 82 -2.3 -6.28631 | GCATTATTATTCATT TAATTTA AACCTA TAAATTA TTTTTTTTTCATTTC BB0307 316143 - 315307 - | hypothetical protein TERM 260 315419 - 315401 - G 70 -4.7 -4.64676 | TTACCCTTAACAAAA TTAAGAT CATTT ATCTTAA GACATCCCCCATCTT TERM 261 315996 - 315968 - G 93 -11.9 -2.85909 | AAAATTTTATAATTA TTGGAAAAAACAG ATA CGGTTTTTTCCAA GGGCCTTAACCTTAG BB0308 317216 - 316140 - | hypothetical protein BB0309 318026 - 317247 - | hypothetical protein BB0310 318256 - 318119 - | hypothetical protein TERM 262 318250 - 318238 - G 72 -3.5 -5.23396 | AACAACCAAGAAAAA TTTTT ATT AAAAA GAACACTGTTTAAAA BB0311 319158 - 318277 - | hypothetical protein TERM 263 318984 - 318965 - GR 100 -6.6 -5.57888 | ATCAAAAAAAGAAAA TTTTCTTT TGGA AAAGAAAA TAAAGGTCTGCCAAC BB0312 319636 - 319106 - | purine-binding chemotaxis protein (cheW-1) BB0313 320258 - 319680 - | cell division protein (ftsJ) TERM 264 320649 - 320637 - g 73 -5.5 -4.77759 | ACAATTCACTAAAAA GACGC GGT GCATC AGCAATACATTTAAT TERM 265 320772 - 320752 - g 71 -4.1 -5.14698 | AAATTTAAAAGAAAA TCAAAAATT ATT AATTTATGA AAATTTCTTTACAAC BB0314 320309 - 321352 + | octaprenyl-diphosphate synthase (ispB) BB0315 321352 - 322038 + | hypothetical protein BB0316 322846 - 322040 - | hypothetical protein TERM 266 322164 - 322154 - G 71 -4 -5.03314 | TTGAGTGCGAAAAAA TTGA TAT TCAA AAAAAACTATCAAAA BB0317 323779 - 322847 - | hypothetical protein TERM 267 323474 - 323462 - G 95 -6.2 -5.61689 | AAAAGTAATAAAAAA GGGG ATAAG CCCC AAAAGTCCTACAAAA BB0318 325236 - 323776 - | methylgalactoside ABC transporter, ATP-binding protein (mglA) TERM 268 324493 - 324519 + g 78 -9.6 -3.02745 | opp_overlap 324493 324507 324510, overlap 324490 AGGATCTTTTTCAAA TTTGTTGCAATT AAT ATTTGCAACAAA TACTTTGTCACTAGA TERM 269 324519 - 324493 - G 84 -9.6 -3.5393 | opp_overlap 324493 324490, overlap 324507 324510 AGGATCTTTTTCAAA TTTGTTGCAATT AAT ATTTGCAACAAA TACTTTGTCACTAGA BB0319 326288 - 325236 - | exported protein (tpn38b) TERM 270 326071 - 326085 + g 78 -2.8 -5.86332 | TCTAAAACTTTAATT TCAAGA TTT TCATGA TTTTTTTTAAATTCA BB0320 326432 - 326325 - | hypothetical protein BB0321 326666 - 326469 - | hypothetical protein TERM 271 326545 - 326557 + g 87 -4.9 -5.78622 | opp_overlap 326545 TAATATAATAAAACT TGAAA ATT TTTCA TTTTTTTTAAAATGG TERM 272 326686 - 326668 - R 84 -9 -4.20783 | ATGCCATCTAACAAA TAGCTTTA ACA TAAAGCTA AATATATAAAAATCA BB0322 327757 - 326699 - | hypothetical protein TERM 273 326798 - 326825 + g 73 -4.4 -5.16151 | overlap 326800 326819 CTTTAGAGAATGGAT TGTTTTAAAAAA CTTA TTTTTTAAAAGA TTTTTATTAGCTTTG TERM 274 329050 - 329023 - g 74 -4.8 -5.10461 | opp_overlap 329030, overlap 329025 TTTACGTAATAAAAA TAGGCAATACCC TATG GGGCATTTCCAA AAAATTATACAACGA TERM 275 329048 - 329025 - g 75 -7.4 -4.17914 | opp_overlap 329030, overlap 329023 TACGTAATAAAAATA GGCAATACCC TATG GGGCATTTCC AAAAAATTATACAAC BB0323 328032 - 329165 + | hypothetical protein TERM 276 329214 - 329173 - f 100 -8.9 -5.04356 | opp_overlap 329183 329212, overlap 329176 329183 CCAAATAAGCAAAAA CAATCATAAAGCAAGGCTT TAAA AAGCCTTGCTTTCTTATTT TATATCTAATAAAAT TERM 277 329211 - 329176 - f 100 -10.6 -4.57543 | opp_overlap 329183, overlap 329173 329183 AATAAGCAAAAACAA TCATAAAGCAAGGCTT TAAA AAGCCTTGCTTTCTTA TTTTATATCTAATAA TERM 278 329204 - 329183 - f 100 -13.1 -4.21303 | opp_overlap 329183, overlap 329176 329173 AAAAACAATCATAAA GCAAGGCTT TAAA AAGCCTTGC TTTCTTATTTTATAT TERM 279 329183 - 329204 + F 100 -13.1 -4.73973 | opp_overlap 329183 329176 329173 AAAAACAATCATAAA GCAAGGCTT TAAA AAGCCTTGC TTTCTTATTTTATAT TERM 280 329353 - 329334 - g 72 -5 -4.93177 | opp_overlap 329338, overlap 329338 GAAAAATTAACAAAA GAAACTCC TTAT GGAGTTTA TCTTAGAGAAGCTCA TERM 281 329349 - 329338 - g 78 -5.8 -4.91657 | opp_overlap 329338, overlap 329334 AATTAACAAAAGAAA CTCC TTAT GGAG TTTATCTTAGAGAAG BB0324 329262 - 329621 + | hypothetical protein BB0325 330752 - 329643 - | hypothetical protein TERM 282 330759 - 330743 - G 81 -2.3 -6.11392 | AAAGAAATAAAAAAA TTTTCTT CAT AAGGAAA CCACCCTCATAAATA BB0326 333598 - 330803 - | hypothetical protein TERM 283 333137 - 333179 + g 83 -10.1 -3.31144 | opp_overlap 333146 333147, overlap 333138 333146 ATTATTGCCTTGATT GTTAATCAACTCCTCAGAA CTTAA TTCTGGGGAATTGATTAAA TTGTCAAAATCAAGC TERM 284 333138 - 333178 + g 100 -13.6 -2.58544 | opp_overlap 333146 333147, overlap 333137 333146 TTATTGCCTTGATTG TTAATCAACTCCTCAGAA CTTAA TTCTGGGGAATTGATTAA ATTGTCAAAATCAAG TERM 285 333562 - 333519 - G 72 -6.2 -4.29176 | opp_overlap 333524 333525, overlap 333522 333533 ATACTTAAGCCAAAA GATTCTTTAGATAATCTTTC ATTA GAAAGATTATCTAATATTTC TCTTTTAAACTGTAT TERM 286 333524 - 333558 + g 90 -9.7 -4.45771 | gap 1, opp_overlap 333522 333519 333533, overlap 333525 TAAGCCAAAAGATTC T-TTAGATAATCTTTC ATTA GAAAGATTATCTAATA TTTCTCTTTTAAACT TERM 287 333525 - 333556 + g 100 -14.8 -3.82656 | opp_overlap 333522 333519 333533, overlap 333524 AAGCCAAAAGATTCT TTAGATAATCTTTC ATTA GAAAGATTATCTAA TATTTCTCTTTTAAA TERM 288 333617 - 333629 + r 77 -3.4 -5.63504 | overlap 333618 GTAATCAAGTTCCTA GCTT ATAAA AAGC TTTTTTTATAAAATT BB0327 334515 - 333619 - | glycerol-3-phosphate O-acyltransferase, putative BB0328 334919 - 336508 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (oppA-1) TERM 289 336516 - 336506 - f 70 -2.6 -5.48054 | ATTAAAACTAAAAAA TAAT AAA ATTA AGTAAAATAAGTAAT TERM 290 336930 - 336918 - g 89 -6.3 -5.48063 | ACCTAAGAGAAAAAA TCACT TGG AGTGA CGGAGTTGCAATCAC BB0329 336629 - 338215 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (oppA-2) TERM 291 338237 - 338213 - f 73 -4.5 -5.14819 | AAATTAAAAAATAAA TAATATAATAA ACT TTATAATATTA AATTTAATTAAATAA BB0330 338358 - 339983 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (oppA-3) BB0331 340217 - 340062 - | hypothetical protein TERM 292 340129 - 340089 - G 95 -10.8 -4.2572 | gap 1, overlap 340086 AAAATACATAAATAA TGTGTAAGATTCTATGATA ATTT TA-CTTAGAATCTTACACA AAAAAATTCTTCTCA BB0332 340341 - 341261 + | oligopeptide ABC transporter, permease protein (oppB-1) BB0333 341274 - 342323 + | oligopeptide ABC transporter, permease protein (oppC-1) BB0334 342335 - 343207 + | oligopeptide ABC transporter, ATP-binding protein (oppD) BB0335 343208 - 344179 + | oligopeptide ABC transporter, ATP-binding protein (oppF) BB0336 344947 - 344192 - | P26 BB0337 345063 - 346364 + | enolase (eno) TERM 293 346394 - 346362 - T 77 -5 -5.33405 | opp_overlap 346371, overlap 346371 TCTATTAAACAAAAA TAAATCAAATCCCT GTAAA AGGGATTTTTTTTA ATTAAATAAAAATGT TERM 294 346371 - 346385 + T 90 -5.7 -5.95166 | opp_overlap 346371 346362 CAAAAATAAATCAAA TCCCT GTAAA AGGGA TTTTTTTTAATTAAA rpsI 346841 - 346431 - | 30S ribosomal protein S9 rplM 347301 - 346861 - | 50S ribosomal protein L13 BB0340 348160 - 347351 - | hypothetical protein gatB 349610 - 348153 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 295 348206 - 348218 + g 71 -2.7 -5.4148 | CAAGTATAGGATTAA TCTTT CCT GAAGA TTTTTTCATTATTTG BB0342 351090 - 349600 - | Glu-tRNA amidotransferase, subunit A (gluA) gatC 351331 - 351056 - | aspartyl/glutamyl-tRNA amidotransferase subunit C BB0344 353440 - 351341 - | DNA helicase (uvrD) TERM 296 351619 - 351609 - G 74 -6.8 -4.2757 | opp_overlap 351609 351608, overlap 351606 TGGAAAAAAACAGAA GGCA AAG TGCC CTTATAAGAACCTCT TERM 297 352250 - 352274 + g 100 -13.1 -3.86015 | opp_overlap 352257, overlap 352241 352253 352257 CTTGTTTATCATTCT CAAGAAAGATA TTT TATCTTTCTTG TTTATAAAAAGCCTA TERM 298 352253 - 352271 + g 84 -9 -4.06419 | opp_overlap 352257, overlap 352241 352250 352257 GTTTATCATTCTCAA GAAAGATA TTT TATCTTTC TTGTTTATAAAAAGC TERM 299 352984 - 352970 - G 70 -5.8 -4.29326 | opp_overlap 352970 352969 352975 352979 TGTAAATTGAATAAA TTTTTC TAA GAAAAA ATTTTCTTTGTCTTT BB0345 354636 - 353440 - | hypothetical protein TERM 300 353712 - 353733 + g 70 -5.3 -4.57073 | opp_overlap 353710 353708 353720, overlap 353713 CATTTAAAAAATCGA TTTTCAAAT CAAC ATTTGAAAG TTTTTGAGAAGAATA TERM 301 354104 - 354086 - G 74 -2.4 -5.56264 | overlap 354088 GTTAAAGATAAAAAA TCTCCCTC TTT AAGAGAAA CGTTCCAAAAATTCT TERM 302 354641 - 354651 + r 76 -2.6 -5.90981 | TTTTCTTTCATAGAT TTAA ACC TTAA TTTTTTTTAATATCA BB0346 355298 - 354648 - | hypothetical protein TERM 303 355404 - 355368 - H 79 -8.3 -4.16842 | opp_overlap 355366 355368 355369, overlap 355369 TTTATTGTCAATAAA CTTTATTTCCATAATAC TAC ATATCATGGAAATAAAC TATTATTAATAGTAC TERM 304 355403 - 355369 - H 90 -11.8 -3.09784 | opp_overlap 355369 355368 355366, overlap 355368 TTATTGTCAATAAAC TTTATTTCCATAATAC TAC ATATCATGGAAATAAA CTATTATTAATAGTA TERM 305 355369 - 355403 + H 72 -8.9 -2.66963 | opp_overlap 355368 355369, overlap 355368 355366 TTATTGTCAATAAAC TTTATTTCCATAATA CTACA TATCATGGAAATAAA CTATTATTAATAGTA TERM 306 356773 - 356760 - g 80 -3.8 -5.5943 | opp_overlap 356760 AAATTAGCAAAAAAA TCGG GAAAAG CCGA TCTTTACTACACTCA BB0347 355482 - 356909 + | fibronectin/fibrinogen-binding protein, putative TERM 307 356938 - 356900 - f 82 -2.4 -6.17033 | overlap 356907 356911 356913 356914 AAAAAAAATAAAAAA TCAAACCTAAACACTGCT TAT AGCAAAGTAAAGTTTTGA ATTTTTTACAAAATA BB0348 357007 - 358440 + | pyruvate kinase TERM 308 359004 - 358977 - g 87 -5 -5.90231 | ACAAATATAAAAAAA GCCTTAAAGTTT GAAG AAAATTTAAAGC ATATCCTTCTTGAAA TERM 309 359085 - 359071 - g 81 -2.2 -6.0458 | ATAAATCAAAAAAAA TATTTC CGG AAAATA TAAATGCAATCATGA BB0349 358458 - 359198 + | hypothetical protein rpmB 359495 - 359217 - | 50S ribosomal protein L28 BB0351 361081 - 359513 - | hypothetical protein TERM 310 361983 - 361961 - g 70 -6.4 -4.20516 | opp_overlap 361967, overlap 361962 361970 TTCCTATTTAATAAA CGATAACAAT GAA ATTGTTATCT CAAACCCAAATTTTA TERM 311 361982 - 361962 - g 81 -9.9 -3.11988 | opp_overlap 361967, overlap 361961 361970 TCCTATTTAATAAAC GATAACAAT GAA ATTGTTATC TCAAACCCAAATTTT BB0352 361188 - 362321 + | hypothetical protein BB0353 364117 - 362318 - | hypothetical protein TERM 312 363235 - 363221 - G 70 -5.8 -4.2704 | opp_overlap 363220 363221 TTCAGTATTAAGAAA CAAAAA ATT TTTTTG CTTTTCTTCGGAAAT BB0354 365170 - 364130 - | hypothetical protein TERM 313 364841 - 364827 - GR 72 -3.6 -5.31072 | ATAATACAATAAAAA TAGAAA GAC TCTCTA GATGAATTTAAAACT TERM 314 364987 - 364962 - GR 72 -3.5 -5.36364 | overlap 364980 CTAAAAATAGAAAAA TTAAAATACAA AAAC TTATATTTCAA ATAAAATGTACATAT BB0355 365603 - 365115 - | transcription factor, putative TERM 315 365250 - 365231 - GR 81 -8 -4.27686 | opp_overlap 365230 365231 CAAAATCATTCAAAA TCCTTTTT TCGT AAAAAGGA AGTTCTTTTTGAGTA BB0356 366137 - 365643 - | hypothetical protein TERM 316 365679 - 365697 + g 70 -6.2 -4.13728 | opp_overlap 365679 GGTTCTAATATTAAA TTTATTTT CAT AAAATAAA TTTTCAAGATATCTA TERM 317 366085 - 366062 - G 70 -5.4 -4.60924 | opp_overlap 366069 TAAACTTTTTAAAAA TCAAAGCCTT TAGA AAAGCTTTAA GCCCGATAAAAATTA BB0357 366236 - 366144 - | hypothetical protein BB0358 366960 - 366229 - | hypothetical protein TERM 318 366351 - 366331 - G 74 -6.9 -4.26881 | CCTTACAAAATTAAA GCCTTTCTC CTT GAAAAAGAC AATTTCGGACTCCGA TERM 319 366368 - 366354 - G 81 -8.6 -4.07746 | CCTTGAAAAAGACAA TTTCGG ACT CCGAAA AGCATCCTTCAGGAC BB0359 368391 - 366964 - | carboxyl-terminal protease (CTP) TERM 320 367457 - 367443 - G 78 -5.6 -4.83169 | AGGCTCCTACAAAAA CCTCTG ATG CTGAGG CTGATGATCTGTCTA TERM 321 367893 - 367878 - G 70 -6.2 -4.09685 | opp_overlap 367878 367880 CTTTACCTTTTAAAA GATCAA CAAC TTGATC TACTTCCATAGAATA BB0360 368456 - 368881 + | hypothetical protein TERM 322 369213 - 369199 - g 82 -4.4 -5.59534 | overlap 369192 AATCATAATAAAAAA TTTAAA ATC TTTAAA ATATGATTACTTAGT TERM 323 370004 - 369991 - g 78 -2.4 -5.81412 | GTTATTTAAAAAAAA GCTT GTTGAA AAGC TTGAAAAGGCTAAGG BB0361 368885 - 370027 + | ATP-binding protein (ylxH-2) TERM 324 370349 - 370361 + G 77 -5.5 -5.00884 | overlap 370344 GCTTTAGAGGTATGG CCATC CAT GGTGG TTTTTTGGGGGCAAT TERM 325 370369 - 370385 + G 78 -8.7 -3.73775 | CATGGTGGTTTTTTG GGGGCAA TAA TTGCTCC TTTAATAACAATAAA BB0362 370027 - 371013 + | prolipoprotein diacylglyceryl transferase BB0363 371034 - 373046 + | periplasmic protein mgsA 373140 - 373520 + | methylglyoxal synthase TERM 326 373548 - 373523 - T 100 -12.1 -4.09685 | CTTGATTTTTTAAAA TAGGCTTTAAT TTAG ATTAAAGCCTA TAAAATCAAAAATAT BB0365 374151 - 373567 - | lipoprotein LA7 TERM 327 374132 - 374106 - G 80 -3.9 -5.58074 | opp_overlap 374125, overlap 374123 374125 CAATTACTAAAAAAA TTAAAAACAAT GACAA ATAGTTTTTAA AAAAACCATTTTTAT TERM 328 374672 - 374699 + G 72 -5.7 -4.58395 | gap 1, overlap 374673 374674 374676 GTATCAGTGGTTATC TA-CACCCCTTT CAATA AGAGGGGTGGTA TTTTTAAAAAATGGA TERM 329 374674 - 374696 + G 80 -9.9 -2.93975 | overlap 374673 374672 374676 ATCAGTGGTTATCTA CACCCCTTT CAATA AGAGGGGTG GTATTTTTAAAAAAT BB0366 374277 - 375653 + | putative aminopeptidase 1 BB0367 375661 - 375939 + | hypothetical protein TERM 330 375961 - 375934 - T 100 -10 -4.81685 | opp_overlap 375937 375941, overlap 375937 ATGAATGAGCAAAAA CAATAAAGCCTC TGCA GAGGCTTTATTT TATTGTCTAACATCT TERM 331 375958 - 375937 - T 100 -11.7 -4.50218 | opp_overlap 375937 375941, overlap 375934 AATGAGCAAAAACAA TAAAGCCTC TGCA GAGGCTTTA TTTTATTGTCTAACA TERM 332 375937 - 375958 + T 100 -11.7 -4.84311 | opp_overlap 375937 375934, overlap 375941 AATGAGCAAAAACAA TAAAGCCTC TGCA GAGGCTTTA TTTTATTGTCTAACA TERM 333 375941 - 375954 + T 91 -8.1 -4.94168 | opp_overlap 375937 375934, overlap 375937 AGCAAAAACAATAAA GCCTC TGCA GAGGC TTTATTTTATTGTCT gpsA 377052 - 375961 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase BB0369 379330 - 377039 - | ATP-dependent Clp protease, subunit A (clpA) TERM 334 377280 - 377292 + g 74 -4.9 -5.04385 | opp_overlap 377290 377291 GCAAAATAATTAAGT TCATT AAA AATGA TTTTTTCAAAATCTA BB0370 380558 - 379341 - | tyrosyl-tRNA synthetase (tyrS) TERM 335 379697 - 379681 - G 75 -7.3 -4.14739 | opp_overlap 379680 379681 TTAGTTATCTCAAAA GCCAAAA TCT CTTTGGC CTTATTTAAAGAATT TERM 336 379787 - 379766 - G 70 -3.1 -5.25735 | opp_overlap 379784 CTAAAAAAGTAAAAA GATATAAAA AAGT TTTCACATC AGAATCTGAAGTATT BB0371 381892 - 380555 - | glycyl-tRNA synthetase gltX 383382 - 381910 - | glutamyl-tRNA synthetase TERM 337 382366 - 382345 - G 88 -10.3 -3.33798 | overlap 382343 382341 AGGCTTAGAAACATA CCCTTTTTT TTGG AAAAAAGGG AGTAAAAGATTAAAT BB0373 384162 - 383395 - | hypothetical protein TERM 338 384003 - 383993 - G 71 -2.6 -5.41746 | AATCTTGGAAAAAAA TATT GGG AATA AATAACATTAAAAAC TERM 339 385050 - 385032 - g 72 -7.4 -3.91905 | opp_overlap 385032, overlap 385027 TAGAATCAAATATAA TAGGCGCT GCT AGTGCCTA TTCTGCTATCATTTT TERM 340 385032 - 385050 + G 82 -9.6 -3.51532 | opp_overlap 385032 385027 TAGAATCAAATATAA TAGGCGCT GCT AGTGCCTA TTCTGCTATCATTTT TERM 341 385329 - 385312 - g 71 -4.2 -5.04597 | AGTTATAGACAAAAA TGAACA ATCTAG TGTTCA ATCTATACCAAATAC BB0374 384287 - 385426 + | hypothetical protein BB0375 385449 - 386162 + | pfs protein (pfs-1) BB0376 386159 - 387337 + | S-adenosylmethionine synthetase BB0377 387334 - 387807 + | S-ribosylhomocysteinase BB0378 388480 - 387818 - | hypothetical protein TERM 342 388476 - 388460 - G 81 -2.3 -5.98675 | opp_overlap 388474, overlap 388463 388471 CATAAAAACAAAAAA GAATAAA AAG TTTCTTC TCATAAAGAATCCTT BB0379 388956 - 388507 - | protein kinase C1 inhibitor (pkcI) TERM 343 388708 - 388724 + g 73 -3.1 -5.47821 | GCTTGAGTTTATTCT TTTTAAA GCA TTTGAAA TTTTTTTACATACCT BB0380 390341 - 388977 - | Mg2+ transport protein (mgtE) TERM 344 389039 - 389023 - G 81 -8.1 -4.29302 | overlap 389020 GCTATATTAAAATAA GCTATTA AAG TAATAGC ATCTGCAATTGTAGT BB0381 391819 - 390392 - | hypothetical protein TERM 345 391645 - 391631 - G 90 -5.7 -5.62045 | opp_overlap 391631 ATAGACAAGAAAAAA GCTTG ACATA CAAGC TTGCATCTGATCTAT BB0382 392957 - 391932 - | basic membrane protein B (bmpB) TERM 346 392531 - 392496 - G 76 -7.1 -4.3739 | gap 1 TATTTTGCCAGAAAA GCTTTTTTTGGCTG CAATATAGC CAGCCAAAAA-AGC ACCTTGCTCTACTCT BB0383 394063 - 393044 - | basic membrane protein A (bmpA) BB0384 395166 - 394105 - | basic membrane protein C (bmpC) TERM 347 394528 - 394557 + g 70 -2.2 -5.42259 | gap 1, overlap 394530 TAGAGCCATTGCTTT GC-CTTTCTCCTT ATCAA AAAGAGAAGGTGC TTTTTTTGAAACTAA TERM 348 395350 - 395322 - R 73 -7.5 -3.67974 | overlap 395325 ATTAATAAAAACACA GTAGTAGGAAAAA TAA TTTTTCCTACATC ACCATAATATCCAAA TERM 349 395347 - 395325 - R 89 -12.2 -2.92142 | overlap 395322 AATAAAAACACAGTA GTAGGAAAAA TAA TTTTTCCTAC ATCACCATAATATCC BB0385 396563 - 395481 - | basic membrane protein D (bmpD) TERM 350 396582 - 396600 + r 100 -11.8 -4.65838 | opp_overlap 396582 ATATAAACAAAAAAA GACACCTT AAA AAGGTGTC TTTTTACCATCTATA TERM 351 396600 - 396582 - R 100 -11.8 -6.04953 | opp_overlap 396582 ATATAAACAAAAAAA GACACCTT AAA AAGGTGTC TTTTTACCATCTATA BB0386 397077 - 396604 - | 30S ribosomal protein S7 rpsL 397476 - 397102 - | 30S ribosomal protein S12 BB0388 401677 - 397544 - | DNA-directed RNA polymerase subunit beta' TERM 352 397972 - 397993 + g 88 -10.3 -3.34043 | opp_overlap 397969 397968, overlap 397975 TTCGATAAACATCCT GAATTTCTG CCAA CAGAAATTC TTGTAAACTAATCCC TERM 353 400023 - 400035 + g 79 -3.4 -5.67063 | TCATTAAATATAACC CTAC CGGCC GTAG TTTTTTTGTACTCAC TERM 354 400229 - 400213 - G 81 -7.3 -4.65895 | overlap 400221 CTTGGGATGGAAAAA CAATAGG ATG CCCATTG GCAGGATTTAAAAGA rpoB 405160 - 401693 - | DNA-directed RNA polymerase subunit beta TERM 355 402930 - 402904 - G 71 -7.4 -3.8186 | CATTCCAAGGAATAA CTCCTAGCAATA AAT TATTACCAAGAG CAAGTTCTCCATATC TERM 356 404726 - 404710 - G 70 -2.9 -5.24129 | TTTCTTTATAAAAAA CAACTCC TGG GGATCTG TGAATCTGAGAAACA TERM 357 405213 - 405191 - R 71 -8.4 -2.97503 | overlap 405190 TTAAGACATAACAAG CCGCACATCA TAA CGACATGCGG AATAACAACTTTGAT rplL 405617 - 405243 - | 50S ribosomal protein L7/L12 rplJ 406194 - 405688 - | 50S ribosomal protein L10 TERM 358 405932 - 405891 - G 73 -3.2 -5.4588 | opp_overlap 405896 CAAAATCATAAAAAA TTTTTGCTATTACATTAG CTTCTT CTAATGCAGTAACAACAA CTGTAGGGCCAACCA rplA 406861 - 406181 - | 50S ribosomal protein L1 rplK 407292 - 406861 - | 50S ribosomal protein L11 TERM 359 407156 - 407124 - G 73 -9.1 -2.7438 | opp_overlap 407124, overlap 407123 407121 CAGTAATAATAACAG GAACCACAATGCCGG GAT CCATCTTTGCGGTTC TCTCATTAAATTCCT TERM 360 407256 - 407277 + g 93 -3.1 -6.3578 | GAGCAGCTGGAACCT GCAATTT AATCCAAG AAATTGC TTTTTTTTTTGCCAT BB0394 407898 - 407344 - | transcription antitermination factor (nusG) TERM 361 407848 - 407870 + g 71 -7.8 -3.61178 | TATGTCCTGCTCTAT CTTTTTCTCA TAT TGAGAATAAG TTTGAACTACATACC secE 408092 - 407922 - | preprotein translocase subunit SecE rpmG 408380 - 408201 - | 50S ribosomal protein L33 BB0397 409402 - 408554 - | hypothetical protein BB0398 410447 - 409416 - | hypothetical protein BB0399 410787 - 411446 + | hypothetical protein BB0400 413006 - 411456 - | hypothetical protein TERM 362 412435 - 412463 + g 79 -4.7 -5.52807 | GTTCTCTTAAGGCTA CTTTTTGCAAA ATCAATA TTTGCCAAAAG TTTTTCTTTCTTATT TERM 363 413249 - 413278 + G 100 -13.9 -3.63515 | opp_overlap 413251 TTATTCCCTTTTTAA TATTTTCAATTCC ATTA GGAATTGAAAATA TTATTGAAAATAAAA TERM 364 413276 - 413251 - g 95 -12.1 -3.01791 | opp_overlap 413249 ATTCCCTTTTTAATA TTTTCAATTCC ATTA GGAATTGAAAA TATTATTGAAAATAA TERM 365 413853 - 413810 - g 89 -7.8 -5.17744 | opp_overlap 413809 413819 ATAGATTAACAAAAA GTTTTAAAATGATATATAAA GGCA TTTTTGTATCATTTCAAAAC ATAATATTTTCAGGA BB0401 413113 - 414315 + | glutamate transporter, putative BB0402 415793 - 414327 - | prolyl-tRNA synthetase TERM 366 415120 - 415133 + g 73 -3.1 -5.48063 | gap 1 AAATAATGGGATGTA GCGGCT TGA AGC-GC TTTTTTATCTTGCAT BB0403 416523 - 415846 - | hypothetical protein TERM 367 416213 - 416249 + g 75 -8.4 -3.35775 | opp_overlap 416213, overlap 416211 CGCCCTCTTCTTAAA TGATTAATTTTAAATT CTTTA ACTTTAAAATTAATCA TCTTTAAAAGCTCAT TERM 368 416249 - 416213 - G 80 -9.1 -3.53012 | opp_overlap 416213 416211 CGCCCTCTTCTTAAA TGATTAATTTTAAATTC TTT AACTTTAAAATTAATCA TCTTTAAAAGCTCAT TERM 369 416745 - 416786 + G 95 -11.3 -4.20768 | gap 1, opp_overlap 416745 416775, overlap 416735 416734 416732 416775 CTTGAGGCAAATAAA GTTTTTTTGCCATAGTTTTA TAA TAAAAC-ATTGCAAAAAAAC TTATTTATTGCAAAT TERM 370 416786 - 416745 - g 100 -11.3 -4.46112 | gap 1, opp_overlap 416735 416734 416732 416745 416775, overlap 416775 CTTGAGGCAAATAAA GTTTTTTTGCCATAGTTTTA TAA TAAAAC-ATTGCAAAAAAAC TTATTTATTGCAAAT BB0404 416689 - 417105 + | hypothetical protein BB0405 417102 - 417713 + | hypothetical protein BB0406 417724 - 418335 + | hypothetical protein TERM 371 418397 - 418349 - T 95 -10.8 -4.17274 | gap 1, opp_overlap 418362, overlap 418350 418362 AACCAAATAATTAAA TTGGTAATTAAAATTAAGCTCGC ATAA GCAAGCTTAATTTTAATTAA-AA CCAGCAATAAAAGCT TERM 372 418397 - 418350 - T 90 -12.4 -3.08738 | opp_overlap 418362, overlap 418349 418362 ACCAAATAATTAAAT TGGTAATTAAAATTAAGCTCGC ATAA GCAAGCTTAATTTTAATTAAAA CCAGCAATAAAAGCT TERM 373 418362 - 418385 + T 82 -8.2 -4.4078 | opp_overlap 418349 418350 418362 AATTGGTAATTAAAA TTAAGCTCGC ATAA GCAAGCTTAA TTTTAATTAAAACCA TERM 374 418385 - 418362 - T 100 -10.4 -4.41895 | opp_overlap 418362, overlap 418349 418350 AATTGGTAATTAAAA TTAAGCTCGC ATAA GCAAGCTTAA TTTTAATTAAAACCA BB0407 419506 - 418388 - | mannose-6-phosphate isomerase (manA) BB0408 421380 - 419503 - | PTS system, fructose-specific IIABC component (fruA-1) TERM 375 421425 - 421407 - H 72 -7.6 -3.56844 | overlap 421400 421405 CCTAGTAATTAAACA TATTGTAT AAT ATACAATA AAAATAGCATACCAC BB0409 421554 - 422183 + | hypothetical protein BB0410 422180 - 422299 + | hypothetical protein BB0411 422471 - 423058 + | endonuclease precursor (nucA) TERM 376 423218 - 423235 + G 71 -7.1 -3.72374 | opp_overlap 423218 423217 ATAATTTTATAATAT TGGTTAA TAAA TTAACCA TCTTTATTGCTGGGA BB0412 423055 - 423834 + | hypothetical protein BB0413 424445 - 423822 - | hypothetical protein TERM 377 424390 - 424380 - G 71 -2.6 -5.38348 | opp_overlap 424380, overlap 424373 AAAAATATGAAAAAA TTTT CTA AAAA TTTCATACTTAATAT BB0414 424694 - 425551 + | chemotaxis protein methyltransferase (cheR-2) BB0415 425584 - 426711 + | protein-glutamate methylesterase (cheB-1) BB0416 426736 - 427950 + | pheromone shutdown protein (traB) TERM 378 428255 - 428280 + G 74 -6.3 -4.59109 | opp_overlap 428255 GATTTCCGCGCAATA TTTGTCAAG CCGAGGCT CTTGACAAA TTTTTGCCAAATGTA BB0417 427987 - 428622 + | adenylate kinase (adk) BB0418 428646 - 429674 + | hypothetical protein BB0419 430616 - 429693 - | response regulatory protein (rrp-1) TERM 379 429730 - 429760 + g 93 -11.3 -3.15841 | opp_overlap 429737, overlap 429736 CCAGAAACTTTAGCC TCATAAAGCTTGC GATCA GCAAGCCTTATGA TATTGGTAAAATTGT TERM 380 429753 - 429737 - G 76 -8 -3.87815 | opp_overlap 429736 429730 CTTTAGCCTCATAAA GCTTGC GATCA GCAAGC CTTATGATATTGGTA BB0420 435103 - 430619 - | sensory transduction histidine kinase, putative TERM 381 431697 - 431707 + g 70 -3.2 -5.24531 | opp_overlap 431706 TCAAAATCCATTTCT GGGT TAA ACTC TTTTTTATAAAGAAT TERM 382 432823 - 432837 + g 72 -5.6 -4.45473 | overlap 432825 TGGTTTTAGCAGCAT TAGCGG CTT CCGCAA TCTTTTTTTCATTCA TERM 383 433075 - 433091 + g 73 -8.1 -3.35679 | opp_overlap 433081 TTTGAATAATTTCTT TCAAGAT ATA ATCTTGA TTATAAATAGCAAGA TERM 384 433188 - 433177 - G 72 -5.8 -4.59853 | opp_overlap 433177 TTAATTCCTCAAAAA CAGC AGCA GCTG TATACTCATCGCTAA TERM 385 433246 - 433234 - G 75 -7.7 -4.06419 | TTCCCTTATAAAGAA GAAGC AAC GCTTC ATTAAAACTGCTTAC TERM 386 433600 - 433610 + g 70 -5.4 -4.56597 | opp_overlap 433600 CCTCAACATAATCTA TTGG ATA CCAA TTTTTAACAGCAAGA TERM 387 437697 - 437708 + r 75 -7.2 -4.2354 | CAGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 388 438135 - 438115 - R 74 -8.3 -3.35723 | opp_overlap 438113 438117 438134, overlap 438113 438117 TATTTAAATAATAGA TAGCTAGCA TCT TGCTAGCTG GATTACTCCATTCGG TERM 389 438133 - 438117 - R 90 -10.9 -3.23555 | opp_overlap 438117 438113, overlap 438113 438115 TTTAAATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC TERM 390 438117 - 438133 + r 82 -10.9 -2.57721 | opp_overlap 438113 438115 438117, overlap 438113 TTTAAATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC TERM 391 440942 - 440953 + r 75 -7.2 -4.2354 | CAGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC TERM 392 441380 - 441360 - R 74 -8.3 -3.35723 | opp_overlap 441358 441362 441379, overlap 441358 441362 TATTTAAATAATAGA TAGCTAGCA TCT TGCTAGCTG GATTACTCCATTCGG TERM 393 441362 - 441378 + r 82 -10.9 -2.57721 | opp_overlap 441358 441362 441360, overlap 441358 TTTAAATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC TERM 394 441378 - 441362 - R 90 -10.9 -3.23555 | opp_overlap 441358 441362, overlap 441358 441360 TTTAAATAATAGATA GCTAGCA TCT TGCTAGC TGGATTACTCCATTC BB0421 442552 - 441713 - | hydrolase TERM 395 442608 - 442588 - R 71 -7.1 -4.01184 | opp_overlap 442588 442591, overlap 442591 442606 ATATACTATCACAAA TAATTTATT CTT AATAAATTA TTCTTAAAGCATAAA TERM 396 442678 - 442641 - R 81 -8.9 -3.84389 | opp_overlap 442635 442643 442649, overlap 442625 442633 442643 AATAAAATTTAATAA TATTATATTTTTTTAAA AAAA TTTAAAAAAATATAATT AAATGAAAATCAACG TERM 397 442676 - 442643 - R 95 -11.5 -3.48479 | opp_overlap 442635 442643 442649, overlap 442625 442641 442633 TAAAATTTAATAATA TTATATTTTTTTAAA AAAA TTTAAAAAAATATAA TTAAATGAAAATCAA TERM 398 442643 - 442676 + r 90 -11.5 -3.06183 | opp_overlap 442625 442643 442641 442633, overlap 442635 442649 TAAAATTTAATAATA TTATATTTTTTTAAA AAAA TTTAAAAAAATATAA TTAAATGAAAATCAA BB0422 443248 - 442688 - | 3-methyladenine DNA glycosylase (mag) TERM 399 443287 - 443270 - R 73 -4.3 -5.10163 | overlap 443273 AATTTTAAAACAAAA TAATAAT AAAA ATTATTA CCAAAACACACATGT TERM 400 443431 - 443399 - R 100 -13.9 -3.14132 | opp_overlap 443403, overlap 443403 TTCTTGGTTGATTAA TAAATTTTTTTGATT TTT AATCAAAAAAATTTA AAAAGTTGAACTAGT TERM 401 443427 - 443403 - R 95 -10.3 -4.24342 | opp_overlap 443403, overlap 443399 TGGTTGATTAATAAA TTTTTTTGATT TTT AATCAAAAAAA TTTAAAAAGTTGAAC TERM 402 443403 - 443427 + r 91 -10.3 -3.57561 | opp_overlap 443399 443403 TGGTTGATTAATAAA TTTTTTTGATT TTT AATCAAAAAAA TTTAAAAAGTTGAAC TERM 403 443451 - 443436 - R 78 -6.2 -4.97888 | opp_overlap 443436 AAAAAAATTTAAAAA GTTGAA CTAG TTCAAC TTAAATCAGCTTATA TERM 404 443579 - 443528 - R 89 -9.2 -4.33146 | gap 1, opp_overlap 443540, overlap 443522 443533 443538 ATAAAAAATTATAAA CTATATGCAATATCTCTTACATCTT GAA AAGATATAAGAGATATTG-ACAAAA TCATAAGATTTAAAT TERM 405 443576 - 443533 - R 100 -15.8 -3.09128 | gap 1, opp_overlap 443540, overlap 443528 443538 AAATTATAAACTATA TG-CAATATCTCTTACATCTT GAA AAGATATAAGAGATATTGACA AAATCATAAGATTTA TERM 406 443570 - 443538 - R 100 -14.5 -3.18126 | opp_overlap 443540, overlap 443533 443528 ATAAACTATATGCAA TATCTCTTACATCTT GAA AAGATATAAGAGATA TTGACAAAATCATAA TERM 407 443540 - 443568 + r 85 -10.5 -3.0263 | opp_overlap 443538 443533 443528 AAACTATATGCAATA TCTCTTACATCTT GAA AAGATATAAGAGA TATTGACAAAATCAT BB0423 444053 - 443763 - | hypothetical protein BB0424 444150 - 444299 + | hypothetical protein TERM 408 444366 - 444382 + T 83 -10.9 -2.62396 | TCGAACCCTTGACCC TCGGCTT GCA AAGCCGA TGCTCTAGCCAACTG TERM 409 445493 - 445509 + T 79 -8.7 -3.82117 | overlap 445492 GTTTCCAACATAGGT CCACAGT TGA GCTGTGG TATTTTATGCATAGA BB0425 446205 - 446113 - | hypothetical protein BB0426 446890 - 446327 - | hypothetical protein BB0427 447760 - 446969 - | hypothetical protein BB0428 447855 - 448172 + | hypothetical protein BB0429 448591 - 448202 - | hypothetical protein TERM 410 448904 - 448884 - g 74 -4 -5.29846 | AATCGGAAACAAAAA CTCATTTC TAAAT GGAATGAG TGATGATCGAGAACC BB0430 448705 - 449310 + | proline dipeptidase (pepQ) TERM 411 449634 - 449618 - g 100 -8.1 -5.84381 | TTATTAACAAAAAAA TAAAGGT CAA ACCTTTA AATCATTTTGGATTA BB0431 449419 - 450171 + | hypothetical protein TERM 412 450271 - 450261 - g 84 -4 -5.85178 | overlap 450268 AATACTGAAAAAAAA GAAA TTA TTTC GATTGAAAGAAAAAA TERM 413 450540 - 450512 - g 95 -12.5 -3.72396 | overlap 450513 AATATCAAGATACAA TCTGCTTGTCGAA AAT TCCGACAAGCAGC TCACTATAGAAAAAT TERM 414 450539 - 450513 - g 100 -16 -2.82353 | overlap 450512 ATATCAAGATACAAT CTGCTTGTCGAA AAT TCCGACAAGCAG CTCACTATAGAAAAA TERM 415 450654 - 450634 - g 90 -8.5 -4.81249 | opp_overlap 450638 450641, overlap 450638 450640 TTCTAAATGGAAAAA TAAATTCTT TAA AAGAATTTA AAATTGTTTATAAAA TERM 416 450650 - 450638 - g 72 -4.9 -4.92828 | opp_overlap 450638 450641, overlap 450634 450640 AAATGGAAAAATAAA TTCTT TAA AAGAA TTTAAAATTGTTTAT BB0432 450174 - 450887 + | hypothetical protein TERM 417 450897 - 450936 + T 100 -9 -5.17054 | gap 1, opp_overlap 450905 450908 450911, overlap 450902 450905 ATTTAAATTTACAGC TGCACTAATAAGAATATAT AAA ATATATTCTTATT-GTTCA TTTTTTAAATATTAT TERM 418 450902 - 450932 + T 95 -10.8 -3.94773 | opp_overlap 450905 450908 450911, overlap 450897 450905 AATTTACAGCTGCAC TAATAAGAATATAT AAA ATATATTCTTATTG TTCATTTTTTAAATA TERM 419 450929 - 450905 - T 87 -10.3 -3.16191 | opp_overlap 450902 450897 450905, overlap 450908 450911 TTACAGCTGCACTAA TAAGAATATAT AAA ATATATTCTTA TTGTTCATTTTTTAA TERM 420 450905 - 450929 + T 95 -10.3 -4.0749 | opp_overlap 450905 450908 450911, overlap 450902 450897 TTACAGCTGCACTAA TAAGAATATAT AAA ATATATTCTTA TTGTTCATTTTTTAA TERM 421 450926 - 450908 - T 73 -7.6 -3.72324 | opp_overlap 450905 450902 450897, overlap 450905 450911 CAGCTGCACTAATAA GAATATAT AAA ATATATTC TTATTGTTCATTTTT BB0433 451070 - 450972 - | hypothetical protein BB0434 451921 - 451139 - | stage 0 sporulation protein J (spo0J) TERM 422 451347 - 451369 + g 93 -3.5 -6.13 | opp_overlap 451346, overlap 451359 AAATTTTTAACATAT TTTTCTGCA TCCCT TACAGAAAA TTTTTTTTTAAGTAT TERM 423 452017 - 451996 - R 100 -11.7 -6.44931 | opp_overlap 451999, overlap 452015 AAGAATAAAAAAAAA GAATGTTCC ACGT GGAACATTC TTAAACAAGAAAAAC TERM 424 451999 - 452014 + r 72 -7.6 -3.61398 | opp_overlap 451996 AATAAAAAAAAAGAA TGTTCC ACGT GGAACA TTCTTAAACAAGAAA BB0435 454472 - 452040 - | DNA gyrase, subunit A (gyrA) TERM 425 453530 - 453544 + g 83 -8.6 -4.27316 | opp_overlap 453529 453527 453530 453532 AATTCATAATAACAT GAGGAT CAA ATCCTC TTTTAACTTCAAGAA TERM 426 453544 - 453530 - G 70 -8.6 -2.69661 | opp_overlap 453530, overlap 453529 453527 453532 AATTCATAATAACAT GAGGAT CAA ATCCTC TTTTAACTTCAAGAA BB0436 456403 - 454484 - | DNA gyrase, subunit B (gyrB) TERM 427 454710 - 454735 + g 100 -6.3 -5.77734 | GAAATACTATTGCGA TTTTTAGTTTC AATA GAATCTAAAAA TTTTTCTTTTTCTTT TERM 428 456921 - 456910 - g 71 -4.4 -4.88687 | TCAAAGAAAAAACAA CTTC CAAA GAAG CAATCCAAAATATTC BB0437 456576 - 458036 + | chromosomal replication initiator protein (dnaA) TERM 429 459207 - 459195 - g 74 -6.3 -4.50058 | opp_overlap 459195 459189 459197, overlap 459197 GAGTTACAATTAAAA CTTCT TGG AGAAG ATTTGATTACTGGAA BB0438 458277 - 459434 + | DNA polymerase III, subunit beta (dnaN) BB0439 459525 - 459824 + | hypothetical protein rpmH 459916 - 460071 + | 50S ribosomal protein L34 BB0441 460052 - 460411 + | ribonuclease P protein component (rnpA) TERM 430 461030 - 461046 + G 74 -6.7 -4.36554 | opp_overlap 461030 GCTACAATATAATAA TTATTTG TCT CAAATAA TTTATTATGATAATA TERM 431 461046 - 461030 - g 70 -6.7 -4.00486 | opp_overlap 461030 GCTACAATATAATAA TTATTTG TCT CAAATAA TTTATTATGATAATA TERM 432 461420 - 461439 + G 70 -2.2 -5.43866 | TTATGATGTTATACC TAATTGGG GGCT TTCAATTA TTTTTTTGACAATTG BB0442 460398 - 462032 + | putative inner membrane protein translocase component YidC TERM 433 462700 - 462688 - g 70 -4.9 -4.67478 | opp_overlap 462688 GAAATATAAAAAGAA TAAGA GTC TCTTA TGTTAGAAATAATAG BB0443 462045 - 462773 + | spoIIIJ-associtated protein (jag) BB0444 462819 - 463886 + | nucleotide sugar epimerase TERM 434 464082 - 464105 + G 70 -3.2 -5.37043 | opp_overlap 464073 TAAGATTAAACCAGG TGTAGTTTAT GGGA AGGAACTACA TTTTTTATATGAAAT TERM 435 464542 - 464530 - g 74 -4.9 -5.07107 | overlap 464519 GAAATTTCTAAAAAA TTCTT AGA AAGAA TGGCAAAAATTGAAA BB0445 464053 - 465132 + | fructose-bisphosphate aldolase TERM 436 465161 - 465177 + T 90 -6.5 -5.68489 | AATTTTTATTTGCAA GCTGCTT TTT GAGCGGC TTTTTTATTATTCTA aspS 467278 - 465518 - | aspartyl-tRNA synthetase TERM 437 467065 - 467089 + g 78 -4.4 -5.49579 | TTTTGATCAACAGTC CTTGAATTTT AATGC AATATTCAAG TTTTATTTTTTCTGC BB0447 469387 - 467282 - | Na+/H+ antiporter (napA) TERM 438 468706 - 468738 + g 100 -15.9 -3.6968 | opp_overlap 468715, overlap 468705 CTTTTATTGAGCTTG CTATATCAAGATCTG ATA TAGATCTTGATATAG TTATTACACTTGTAA TERM 439 468812 - 468822 + g 100 -5.4 -5.95539 | TATTGTCACTCCTTC TGAG GTA CTCA TTTTTTTCTTTGCCG BB0448 469665 - 469390 - | phosphocarrier protein HPr (ptsH-1) BB0449 469971 - 469678 - | hypothetical protein TERM 440 469876 - 469893 + g 78 -5.7 -4.98758 | opp_overlap 469863 ATTATCAATATGTTT TTTGATA TGAG TATCAAA TTTTTCTAGCTTTTT BB0450 471220 - 469961 - | RNA polymerase sigma-54 factor (ntrA) TERM 441 470166 - 470179 + g 70 -6.7 -4.01071 | opp_overlap 470164 470166 TTTGCTCCACCAACA GAGCT AAAA AGCTC TTTGATTAATATTGT TERM 442 470780 - 470793 + g 71 -3.9 -5.01676 | AATTGGATCAAATTT TTGAA TAAG TTCAA TTATTTTTTTTACTT BB0451 471756 - 471223 - | chromate transport protein, putative BB0452 472475 - 471771 - | hypothetical protein TERM 443 472060 - 472040 - G 83 -7.7 -4.65153 | TTAGATAAAGGAAAA CCATTATTA TTG CAATAATGG AAGGCAAAATTCCTG TERM 444 472755 - 472774 + G 70 -2.2 -5.46629 | overlap 472757 472765 AAGTTAGAAGTTACA GTTTTTAA CTTT TTAAAATC TTTTTTTAAAATATT BB0453 472566 - 473408 + | hypothetical protein BB0454 474556 - 473405 - | lipopolysaccharide biosynthesis-related protein TERM 445 474398 - 474424 + g 74 -3.8 -5.2696 | TTGAATAGATGAGCA TCTGTAAACG TTTTTTT CGTTTAAAGA TTTTTTGGATTTTGG TERM 446 474776 - 474799 + G 76 -4 -5.42164 | overlap 474777 AGAAATTATTTTCCA ATTCTTTTTT TTCA AAAAAAGAAA TTTTTATTGTTTATG TERM 447 474777 - 474798 + G 73 -7.5 -3.82859 | overlap 474776 GAAATTATTTTCCAA TTCTTTTTT TTCA AAAAAAGAA ATTTTTATTGTTTAT BB0455 474613 - 475602 + | hypothetical protein TERM 448 475805 - 475833 + G 74 -4 -5.20216 | GGTTGAAATCTCAGG CAAAGGATGA TTTCATTTT TTATCCTTTG TTTTTTAATAATCTA TERM 449 476073 - 476084 + G 73 -3 -5.44721 | TGATTTTGATTACAC TGAA GTTG TTCA TTTTTTTAGAGTAGT BB0456 475606 - 476211 + | hypothetical protein BB0457 478074 - 476263 - | excinuclease ABC, subunit C (uvrC) TERM 450 478029 - 478041 + g 70 -4.9 -4.63184 | overlap 478010 AACCGCTTGTGGTTG GTAAT TTT ATTAC TTTTTCGAATAAATT BB0458 478139 - 479716 + | hypothetical protein BB0459 479709 - 481019 + | hypothetical protein BB0460 482057 - 481344 - | hypothetical protein TERM 451 482123 - 482080 - H 82 -10 -3.05816 | opp_overlap 482079 482076 482081, overlap 482100 482101 482104 CCATTTTCTATTGAA TGTTTTTATTGTAATAAATA GTAA TTTTTATTACAATAAAAACT AATTATTTGTGTCCA TERM 452 482081 - 482122 + H 95 -13.5 -3.09322 | opp_overlap 482080 482100 482101 482104, overlap 482079 482076 CATTTTCTATTGAAT GTTTTTATTGTAATAAATA GTAA TTTTTATTACAATAAAAAC TAATTATTTGTGTCC TERM 453 482489 - 482505 + H 73 -6.7 -4.20148 | CAATTTTATTATATT TTTTATG TTT CATAAAA TTCTTTTAAAGTAAT TERM 454 484229 - 484201 - gH 72 -4.7 -4.82901 | opp_overlap 484210, overlap 484210 TGTGTTTCAGAAAAA TTTTAAAAACCTT GAA AAGGATTTTGAAA AACTAGAAACTGTAA TERM 455 484220 - 484210 - gH 73 -5.4 -4.7657 | opp_overlap 484210, overlap 484201 GAAAAATTTTAAAAA CCTT GAA AAGG ATTTTGAAAAACTAG BB0461 482600 - 484282 + | DNA polymerase III subunits gamma and tau BB0462 484254 - 484586 + | hypothetical protein BB0463 484757 - 485266 + | nucleoside-diphosphate kinase (ndk) BB0464 485550 - 486077 + | hypothetical protein BB0465 486074 - 486769 + | hypothetical protein TERM 456 486800 - 486777 - gf 78 -4.6 -5.43329 | opp_overlap 486779 486799, overlap 486779 AAAAATAAAATAAAA GAGATTAAGG AAAG CCTTAACCTT GATTCTGTCAATAAT TERM 457 486798 - 486779 - gf 76 -7.2 -4.26966 | opp_overlap 486779, overlap 486777 AAATAAAATAAAAGA GATTAAGG AAAG CCTTAACC TTGATTCTGTCAATA BB0466 486705 - 487538 + | ABC transporter, ATP-binding protein BB0467 487535 - 488224 + | hypothetical protein BB0468 488226 - 488972 + | hypothetical protein lspA 488983 - 489495 + | signal peptidase II BB0470 489492 - 489719 + | hypothetical protein BB0471 489733 - 490554 + | hypothetical protein TERM 458 490537 - 490564 + F 70 -7.2 -3.82865 | opp_overlap 490537, overlap 490561 AAATCAAGTTTAAAA GATATGGATATT GTTT GATATTCATATC TTTAGATATTCTTTA BB0472 490599 - 491927 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 459 492476 - 492515 + F 95 -10.6 -4.25016 | gap 1, opp_overlap 492485 492501, overlap 492468 492481 AATTGTTTTGATATT GTATATTAATTTTTAATTT TTG AAATTAAAAATTAA-ATAC TTGTTTATTACTGAT BB0473 492588 - 493952 + | hypothetical protein BB0474 493991 - 494092 + | hypothetical protein BB0475 494542 - 494150 - | hypothetical protein TERM 460 494704 - 494714 + H 78 -5.4 -5.10526 | TTATTTTAAGTGGTT GCTT TTA AAGC TTTATTTTTTAATAT TERM 461 494747 - 494767 + H 70 -4.9 -4.8083 | overlap 494764 TGTGCTTTTCTTTAA TTAATGTAA AGT TTATATTAA TTTTTAATGCTATTA TERM 462 494890 - 494908 + H 93 -4.7 -6.32976 | overlap 494898 AACACGTAGTGCGGG TCAATTT CTAAA AAATTGA TTTTTTTATTTTTTT TERM 463 494898 - 494916 + H 77 -3.3 -5.73672 | overlap 494890 GTGCGGGTCAATTTC TAAAAAA TTGAT TTTTTTA TTTTTTTGATTATTT BB0476 495033 - 496217 + | elongation factor Tu rpsJ 496268 - 496579 + | 30S ribosomal protein S10 rplC 496615 - 497235 + | 50S ribosomal protein L3 rplD 497245 - 497874 + | 50S ribosomal protein L4 TERM 464 498146 - 498130 - g 100 -9.5 -4.75174 | opp_overlap 498128 TAGGTAAGGGAAAAA CTTCTTC ATG GAAGAAG GCATATGTTTATCTC rplW 497880 - 498191 + | 50S ribosomal protein L23 rplB 498213 - 499046 + | 50S ribosomal protein L2 rpsS 499056 - 499334 + | 30S ribosomal protein S19 rplV 499341 - 499703 + | 50S ribosomal protein L22 TERM 465 500402 - 500384 - g 73 -3.1 -5.47159 | overlap 500378 GGTAATAAATAAAAA GCCTTTT AGGGA AAGAGGC GATGCTGTTAAAAAT TERM 466 500536 - 500559 + G 81 -10.4 -2.64099 | overlap 500535 AAAAAAAATTTAGTG CGTCTTTTTC TAAA GAAAGAGACG ATTCTAATGAGCAGG rpsC 499707 - 500588 + | 30S ribosomal protein S3 rplP 500593 - 501009 + | 50S ribosomal protein L16 BB0486 501012 - 501212 + | 50S ribosomal protein L29 rpsQ 501215 - 501469 + | 30S ribosomal protein S17 rplN 501497 - 501865 + | 50S ribosomal protein L14 TERM 467 502162 - 502151 - g 73 -3 -5.43514 | AAAATAATGAAAAAA TAAG GTAT CTTA AAAAAAATGGACAGA rplX 501880 - 502185 + | 50S ribosomal protein L24 rplE 502191 - 502739 + | 50S ribosomal protein L5 rpsN 502756 - 502941 + | 30S ribosomal protein S14 rpsH 502951 - 503349 + | 30S ribosomal protein S8 rplF 503366 - 503908 + | 50S ribosomal protein L6 rplR 503926 - 504285 + | 50S ribosomal protein L18 rpsE 504298 - 504795 + | 30S ribosomal protein S5 TERM 468 505046 - 505026 - g 75 -5.5 -4.87273 | opp_overlap 505026 505028, overlap 505028 AATAGGCGATAAAAA GGTTCATTT TTT AAATGAATC TATTAAGGGTATGCT BB0496 504799 - 505104 + | ribosomal protein L30 (rpmD) rplO 505104 - 505541 + | 50S ribosomal protein L15 TERM 469 506195 - 506213 + G 88 -7.6 -4.81843 | TAATCCTGTTTTTGT TATACTTA TTA TAAGTATA TTTATTTTAGTTGTT TERM 470 506338 - 506352 + G 72 -5.6 -4.46215 | TCAAGTTGAATCCAT CGGGCG TTT TGCCTG TTATTTTTGCCTCTG secY 505554 - 506858 + | preprotein translocase subunit SecY rpmJ 506865 - 506984 + | 50S ribosomal protein L36 rpsM 507002 - 507379 + | 30S ribosomal protein S13 BB0501 507394 - 507798 + | 30S ribosomal protein S11 BB0502 507811 - 508848 + | DNA-directed RNA polymerase subunit alpha rplQ 508870 - 509241 + | 50S ribosomal protein L17 BB0504 509314 - 510846 + | phosphodiesterase BB0505 510836 - 511624 + | hypothetical protein TERM 471 511689 - 511671 - g 70 -4.7 -4.64361 | GAAAAAACACGAAAA GAATTAA TGATC TTAATTC TAAAAGGCAATATAT BB0506 511605 - 512396 + | hemolysin (tlyA) BB0507 513148 - 512393 - | hypothetical protein TERM 472 514262 - 514246 - g 70 -6.7 -3.90744 | opp_overlap 514228 TCTCTTTTTAAAGAA TCTTTTA AGT TAAAAGA TCAGCTTGAGCTTAA TERM 473 514430 - 514416 - g 78 -5.8 -4.96996 | opp_overlap 514416 TGCAAATAAAATAAA GAATTT TCC AAATTC TTACTATAATTATTT engA 513226 - 514527 + | GTP-binding protein EngA TERM 474 514967 - 514998 + G 100 -14 -3.97102 | overlap 514968 CATTGCGGTAATTTC TCTTGCCAATATAA TAAA TTATATTGGCAAGG TTGTTGATTTTAGAT TERM 475 514968 - 514997 + G 100 -15.3 -2.97177 | overlap 514967 ATTGCGGTAATTTCT CTTGCCAATATAA TAAA TTATATTGGCAAG GTTGTTGATTTTAGA BB0509 514524 - 515783 + | hypothetical protein TERM 476 515860 - 515875 + G 78 -2.6 -5.91981 | overlap 515861 AATGTTTTTTGAATT TTTAAC TAAT GTTAAG TTTTTTTTAGCTTTT BB0510 515780 - 515998 + | hypothetical protein BB0511 516090 - 516473 + | hypothetical protein TERM 477 516767 - 516755 - g 72 -3.4 -5.32396 | AGATTAAAAATAAAA GCAA TGATT TTGC AGAGGTTGAAAAAAA TERM 478 516793 - 516783 - g 76 -4 -5.42862 | AGAGGTTGAAAAAAA GATA GCC TATC ATGATTCTATGCTTA TERM 479 517894 - 517884 - g 73 -5.4 -4.7268 | opp_overlap 517884 AAATATTCAAGAAAA GCTT ATT AAGC TTAATGATAATTTGA TERM 480 519800 - 519785 - g 72 -4.8 -4.93968 | ATGGAGAAGCAAAAA TTAACA AGCT TGTTAA AGAGATCGAACAGTA TERM 481 522074 - 522048 - g 75 -6 -4.80453 | opp_overlap 522048 TTATGATAAAATAAA TTTTCAAATCGA AAA TCAAATTGAAAA TTTTAAAAAATTAGA TERM 482 522341 - 522301 - g 70 -6.6 -4.04491 | gap 1, opp_overlap 522310, overlap 522310 AAGTTAGAACAAGAA TCAATTAAATCTATTAAAA ATGA TTTTAATAGATTTT-TTGA ATTTTACTCTTCATT TERM 483 522333 - 522310 - g 80 -8.4 -4.04141 | opp_overlap 522310, overlap 522301 CAAGAATCAATTAAA TCTATTAAAA ATGA TTTTAATAGA TTTTTTGAATTTTAC TERM 484 522310 - 522333 + G 100 -8.4 -5.2696 | opp_overlap 522310 522301 CAAGAATCAATTAAA TCTATTAAAA ATGA TTTTAATAGA TTTTTTGAATTTTAC BB0512 516493 - 522993 + | hypothetical protein pheS 522990 - 524576 + | phenylalanyl-tRNA synthetase subunit alpha pheT 524554 - 526254 + | phenylalanyl-tRNA synthetase subunit beta TERM 485 526257 - 526297 + F 83 -7.9 -4.56597 | opp_overlap 526258, overlap 526258 GAGTCGATCTTAAGC ATTGAATATTAGTTTTAGC AAT GTTAAGATTAATATTCAAA TTTTTAAGAGAGGCC TERM 486 526258 - 526296 + F 93 -11.4 -3.33744 | opp_overlap 526258, overlap 526257 AGTCGATCTTAAGCA TTGAATATTAGTTTTAGC AAT GTTAAGATTAATATTCAA ATTTTTAAGAGAGGC TERM 487 526372 - 526392 + G 77 -6.2 -4.65078 | opp_overlap 526372 AACCAAGAAGAAAAA TCTATCTC AAAAA GAGGTAGA TTTTATTGAAGATGT TERM 488 526392 - 526372 - g 74 -4 -5.3321 | opp_overlap 526372 AACCAAGAAGAAAAA TCTATCTC AAAAA GAGGTAGA TTTTATTGAAGATGT TERM 489 526425 - 526448 + G 72 -5.9 -4.49353 | overlap 526426 TAATTGTAGGATCTG GCCCGGCTG GACTAA CAGCTGGGA TTTATTCTGTTATGA TERM 490 526426 - 526447 + G 79 -9.4 -3.28527 | overlap 526425 AATTGTAGGATCTGG CCCGGCTG GACTAA CAGCTGGG ATTTATTCTGTTATG BB0515 526325 - 527305 + | thioredoxin reductase (trxB) BB0516 528047 - 527361 - | rRNA methylase (yacO) TERM 491 527811 - 527822 + g 90 -3 -6.13 | opp_overlap 527811 ATCTAGAAGTAAAAT GAAA GCAT TTTC TTTTTTTTTAAATGT BB0517 529198 - 528104 - | heat shock protein (dnaJ-1) TERM 492 528316 - 528336 + g 75 -3.3 -5.49568 | TTGGAATGTGTATTT TAATCTCTT TTG AAGCGATTG TTTTTATTTTCACTT TERM 493 529148 - 529176 + g 73 -7.5 -3.81689 | TTTTTTTATCTCATC TTTTGAGGCTC CTTTTGA GAGCCCCAAAA TTTCATAATAATCTT dnaK 531105 - 529198 - | molecular chaperone DnaK BB0519 531692 - 531129 - | grpE protein (grpE) TERM 494 531873 - 531892 + r 73 -3 -5.64328 | opp_overlap 531886, overlap 531886 AATGTTCGTGTGTAT TTTTTTGT CAAA ATAAAAAA TTTTATTTTTTTATT BB0520 531967 - 531851 - | hypothetical protein BB0521 532069 - 532521 + | hypothetical protein TERM 495 533240 - 533250 + G 70 -5.4 -4.59773 | CGGAGGGCTTGCTTT GATC GGA GATC TTTTTAAGACTGAGG BB0522 532938 - 533606 + | NH(3)-dependent NAD+ synthetase TERM 496 533632 - 533643 + F 70 -3 -5.61824 | GGAGCTTGAGATTTT GAAA TTCT TTTC TTTTTTTAAATTTTA BB0523 533980 - 534072 + | hypothetical protein TERM 497 534656 - 534675 + G 79 -3.6 -5.57396 | gap 1 TTGAAGGAGCCATTT CTCTTC-CT TTA AGCGGAGAG TTTTTTATTACTTCT TERM 498 534732 - 534746 + G 76 -7.2 -4.33767 | overlap 534736 AAACATTGGTAGCTA TCCTTT AAA AAAGGA TTTTAATAAATTTAT BB0524 534301 - 535155 + | inositol monophosphatase BB0525 535600 - 535178 - | hypothetical protein TERM 499 535632 - 535642 + H 86 -2.6 -6.4275 | opp_overlap 535632 TAACTAGCTAACCTA TAAT TCT ATTA TTTTTTTTGTTTTTA BB0526 535704 - 537527 + | hypothetical protein BB0527 537520 - 538308 + | pantothenate kinase TERM 500 538319 - 538332 + TF 76 -2.5 -5.8187 | ATTGAAATATTTGTT TTTAA AGTT TTAAA TTTTTTTGTTAAATA BB0528 539275 - 538328 - | aldose reductase, putative BB0529 539256 - 539372 + | hypothetical protein BB0530 540020 - 539367 - | hypothetical protein BB0531 540773 - 540159 - | hypothetical protein BB0532 542069 - 541182 - | hypothetical protein TERM 501 541980 - 541961 - G 73 -8 -3.36694 | opp_overlap 541960, overlap 541959 ACGTACCTGGAAATA TTATGAAG TAGT CTTCATAA GTAAATTCTTTTTTA TERM 502 542663 - 542676 + G 81 -2.3 -6.07627 | TTGCCAATGTTATTA GGGAT TTTG AGCCC TTTTTTTTTAAAAGT BB0533 542263 - 543024 + | phnP protein (phnP) BB0534 543049 - 543816 + | exodeoxyribonuclease III (exoA) TERM 503 544333 - 544322 - g 71 -4.4 -4.81863 | overlap 544317 AAATTTATAATAAAA GCAT TTTA ATGC CCAATTTAAATAAAT BB0535 543832 - 544605 + | hypothetical protein TERM 504 545033 - 545011 - g 78 -10 -2.74203 | opp_overlap 545011, overlap 545010 545008 TGAATCTATAAATAT TTTGAGAAAC TGG GCTTCTCAAA TCAGTTTCATGAAAG BB0536 544586 - 547387 + | zinc protease, putative TERM 505 547443 - 547407 - T 72 -5.2 -5.00616 | opp_overlap 547407 547400 TGTTTGCTTAAAAAA CATTCTTGTTTTCTGG GTTTG CTAGAAGGCAAGAATG TTTAGTCTATTTTTA TERM 506 547407 - 547443 + T 100 -11.8 -4.02999 | opp_overlap 547407, overlap 547400 TGTTTGCTTAAAAAA CATTCTTGTTTTCTGG GTTTG CTAGAAGGCAAGAATG TTTAGTCTATTTTTA BB0537 548490 - 547846 - | hypothetical protein TERM 507 548391 - 548403 + g 86 -6.3 -5.27335 | opp_overlap 548391 CTTCTTTATATAGAA GAAGA GAG TCTTC TTTTTCTTTAGGCGG BB0538 548885 - 548487 - | hypothetical protein TERM 508 548859 - 548884 + g 100 -12.1 -4.90917 | opp_overlap 548859 TGAAACCTCTAAAAA TGAATGCTTTA AAGT TAAAGCATTCA TTTTTGATTGAATTT TERM 509 548884 - 548859 - G 100 -12.1 -4.64657 | opp_overlap 548859 TGAAACCTCTAAAAA TGAATGCTTTA AAGT TAAAGCATTCA TTTTTGATTGAATTT BB0539 549618 - 548920 - | hypothetical protein BB0540 551723 - 549642 - | elongation factor G BB0541 552007 - 552225 + | hypothetical protein TERM 510 552272 - 552304 + F 100 -12.1 -4.40605 | opp_overlap 552269 552275, overlap 552275 TTTTAGATAGTATTA AAAGCCCTTTTGCTT TTA AAGCAGGAGGGCTTA TTTATGTTTATGACT TERM 511 552301 - 552275 - f 89 -9.4 -4.34345 | opp_overlap 552275 552272, overlap 552269 TAGATAGTATTAAAA GCCCTTTTGCTT TTA AAGCAGGAGGGC TTATTTATGTTTATG TERM 512 552275 - 552301 + F 100 -13.8 -4.30253 | opp_overlap 552269 552275, overlap 552272 TAGATAGTATTAAAA GCCCTTTTGCTT TTA AAGCAGGAGGGC TTATTTATGTTTATG TERM 513 552986 - 553002 + G 73 -8.1 -3.40498 | overlap 552989 ATACCAAGTGGTGCG GAAGAAA TAG TTTCTTC TATTCTTAAGAGTTA BB0542 552440 - 553018 + | hypothetical protein TERM 514 553007 - 553026 + F 79 -2.2 -6.01187 | overlap 553008 553015 ATAGTTTCTTCTATT CTTAAGAG TTAA TTTTTAAG TTTTTTTGTTTACTT BB0543 553133 - 553789 + | hypothetical protein TERM 515 554507 - 554492 - g 91 -7.6 -5.18995 | overlap 554505 AAGACAAGATAAAAA GCATTC AAGA GAATGC TTAACAGCAAGTCTT BB0544 553992 - 555212 + | phosphoribosylpyrophosphate synthetase TERM 516 555747 - 555720 - g 74 -6.4 -4.51812 | opp_overlap 555719 CTTGACAAGAATAAA TTTCCTCCATTT GTAA AAATGGGAGAAA ATATTGGCGTTGTAA BB0545 555216 - 556580 + | xylulokinase (xylB) BB0546 557423 - 556563 - | hypothetical protein coaE 558024 - 557407 - | dephospho-CoA kinase TERM 517 557589 - 557605 + g 70 -2.3 -5.55769 | AATCAATGTTTGGTA TAGAATA TGA TAATCTA TTTTTTATTATAGAA BB0548 560732 - 558006 - | DNA polymerase I (polA) TERM 518 559714 - 559726 + g 77 -7.7 -4.22009 | ATTGATATGTATTTA GCCTT TTT AAGGC TTTCTATTAAATCAT BB0549 561127 - 560729 - | hypothetical protein TERM 519 560911 - 560921 + g 75 -5.4 -4.87318 | opp_overlap 560911 AGTAATCAAAATTAT CCAA TTT TTGG TTTTTAAATTTTAAC BB0550 561554 - 561117 - | flagellar protein (flaJ) TERM 520 561158 - 561174 + g 79 -6.7 -4.75934 | opp_overlap 561157 561155 561160, overlap 561138 TACTTTGAGTAACAT TATTACT TTG AGTAATA TTATTTTCTTTTTTG BB0551 561964 - 561563 - | chemotaxis response regulator (cheY-1) TERM 521 564093 - 564114 + G 83 -10.3 -2.82327 | opp_overlap 564098, overlap 564092 564098 GGAGAAAAAGCTGGA TCAAAGCTT AAAA AAGCTTTGA GTTTAAATATAAAAA TERM 522 564150 - 564130 - g 100 -9.9 -5.19879 | GTTTAAATATAAAAA TTATGTCTT TTG AAGACATAA AAAGTTACTTAGATT BB0552 562185 - 564167 + | DNA ligase (lig) BB0553 565681 - 564188 - | hypothetical protein TERM 523 565782 - 565754 - H 91 -10.5 -3.745 | opp_overlap 565762 565772, overlap 565756 565762 CCATTTATCAAAAGA GATAAAAATAGCC GGG GGCTATTTTTATT GACAAATAGTGCTGT TERM 524 565780 - 565756 - H 100 -13.1 -3.45073 | opp_overlap 565762 565772, overlap 565754 565762 ATTTATCAAAAGAGA TAAAAATAGCC GGG GGCTATTTTTA TTGACAAATAGTGCT TERM 525 565762 - 565774 + H 90 -7.7 -5.06816 | opp_overlap 565762 565756 565754, overlap 565772 CAAAAGAGATAAAAA TAGCC GGG GGCTA TTTTTATTGACAAAT TERM 526 565774 - 565762 - H 93 -7.7 -5.186 | opp_overlap 565762 565772, overlap 565756 565754 CAAAAGAGATAAAAA TAGCC GGG GGCTA TTTTTATTGACAAAT TERM 527 566368 - 566383 + G 72 -3.4 -5.32944 | TTTTTCAGATGATTT TATTTT AGTT AAAATA TTTTTTGATTCTGAA TERM 528 566963 - 566994 + G 80 -9 -3.59649 | opp_overlap 566979, overlap 566964 566968 ATTAAAGGTGATTAT GCTAGTTTTTTAAA AATT TTTAAAAAACTAGA TTTAAAAAATTCTTT TERM 529 566964 - 566993 + G 93 -12.5 -2.75066 | opp_overlap 566979, overlap 566963 566968 TTAAAGGTGATTATG CTAGTTTTTTAAA AATT TTTAAAAAACTAG ATTTAAAAAATTCTT TERM 530 567018 - 567004 - g 80 -5.8 -5.13473 | ACTAGATTTAAAAAA TTCTTT AAT AAAGAA ATCTGCCGTTTTAAG BB0554 565943 - 567823 + | hypothetical protein BB0555 567810 - 568277 + | hypothetical protein BB0556 568270 - 569139 + | hypothetical protein BB0557 569278 - 569538 + | phosphocarrier protein HPr (ptsH-2) BB0558 569559 - 571280 + | phosphoenolpyruvate-protein phosphatase (ptsI) BB0559 571283 - 571852 + | glucose-specific PTS system component TERM 531 571843 - 571889 + T 100 -17 -3.31515 | opp_overlap 571856, overlap 571856 TTTGGTGTTGCGAGT TAAAAAGTAAAAAGAGAGAGCT TAA AACTCTCTCTTTTTACTTTTAA TTATAAGAAGTCTTT TERM 532 571856 - 571876 + T 95 -8.3 -5.13016 | opp_overlap 571856, overlap 571843 GTTAAAAAGTAAAAA GAGAGAGCT TAA AACTCTCTC TTTTTACTTTTAATT TERM 533 571876 - 571856 - T 100 -10.5 -5.18355 | opp_overlap 571843 571856 GTTAAAAAGTAAAAA GAGAGAGCT TAA AACTCTCTC TTTTTACTTTTAATT BB0560 573842 - 571890 - | heat shock protein 90 TERM 534 572631 - 572649 + g 82 -2.4 -5.95166 | opp_overlap 572631 572632 572633, overlap 572622 572632 572633 AAATTCTTTAGAAAA CTCTGAAA ATT TTTCAGGA TTTTTTTTACTTAGC TERM 535 574435 - 574413 - g 84 -10.6 -3.06969 | opp_overlap 574412 574411 574410 TAATGGAGTGGAATA CGCTGATATG CAG CTTATCAGCG AGGTTTATTTTTTCA TERM 536 575002 - 575043 + G 93 -11.4 -3.34715 | gap 1, overlap 575000 CTTATTAATTTGCTT TTTGATGATTATTTTTTAG ATTTA CTAAAAAATAATCA-CAAA TCTTTAAGAAGAATA BB0561 573853 - 575247 + | 6-phosphogluconate dehydrogenase BB0562 575816 - 575274 - | hypothetical protein TERM 537 575945 - 575972 + r 100 -10.2 -4.91084 | opp_overlap 575958, overlap 575953 ATTTTTCAACAATTG TTCTTTTTTAAA ACTT TTTAAAAAAGAA TTTTATTATTAAGTA BB0563 576526 - 575981 - | hypothetical protein BB0564 577187 - 576582 - | hypothetical protein BB0565 577395 - 577937 + | purine-binding chemotaxis protein (cheW-2) BB0566 577950 - 578261 + | hypothetical protein BB0567 578277 - 580421 + | chemotaxis histidine kinase (cheA-1) TERM 538 580813 - 580794 - g 82 -8 -4.54404 | TAAATTAATAATAAA TAAGCTTA ATTT TAAGCTTA CAGTTGATTTATTTC BB0568 580486 - 581643 + | protein-glutamate methylesterase (cheB-2) TERM 539 582073 - 582085 + G 72 -4.8 -4.90381 | TATGAGAGCGGGTAA GGCT GGTGG AGCC TTTTCTTATATTACG TERM 540 582244 - 582234 - g 71 -4 -5.09259 | opp_overlap 582234 CAGCTGAAAATAAAA TTCT TGA AGAA TTTAGAGATAATTTA BB0569 581645 - 583417 + | hypothetical protein BB0570 583458 - 583832 + | chemotaxis response regulator (cheY-2) pyrH 584880 - 584191 - | uridylate kinase TERM 541 584392 - 584415 + g 75 -3.3 -5.54264 | TTTCCAATTTAATTT TTTAAAAGC TGTTGC GTTTTTAAA TTTTTTTGGGTCTTT TERM 542 584787 - 584809 + g 70 -5 -4.77759 | overlap 584788 584804 CATTTTCTAGTAGCC ATTTAAAAAC AAA GTTTTTAAAG TTTTTAATGAATTCT TERM 543 584788 - 584808 + g 75 -8.5 -3.45571 | overlap 584787 584804 ATTTTCTAGTAGCCA TTTAAAAAC AAA GTTTTTAAA GTTTTTAATGAATTC TERM 544 585061 - 585071 + H 73 -3.2 -5.45802 | GTTTTAGCGTTGATT TTGC TTA GCAG TTTTTATTTTGGAGG TERM 545 585677 - 585689 + G 71 -2.7 -5.41746 | TTTGAAGATATAGTT TTTGT TAT GCAAA TTTTTTTAAAAGCTT BB0572 585080 - 586156 + | glycosyl transferase (lgtD) TERM 546 586722 - 586709 - g 71 -3.9 -5.0133 | opp_overlap 586697 586714 TATTGTTTCAAAAAA TGTTT TTAG AAACA TGCTTTCTAATTTAA BB0573 586212 - 587024 + | ABC transporter, ATP-binding protein TERM 547 587169 - 587179 + G 77 -5.4 -5.16472 | TTTTATTTTAATTTT TCAG CAA CTGA TTTTTTAAAATTTTT TERM 548 587683 - 587693 + G 77 -5.4 -5.07053 | overlap 587691 CTTTTGACAGATTTT TAGG CGA CCTA TTTTTTAAAATAGTT TERM 549 587794 - 587782 - g 90 -3.4 -5.9873 | opp_overlap 587782 GTATTAGAAAAAAAA GCAA TTTGT TTGC TATTCTTGGGTTTTT BB0574 587031 - 587882 + | hypothetical protein BB0575 588066 - 589667 + | CTP synthetase BB0576 590232 - 589684 - | hypothetical protein TERM 550 590163 - 590153 - G 70 -5.4 -4.4572 | opp_overlap 590151 590153 AATATTTTAAATAAA GTCA TGC TGAC TATTAATATTAAATT TERM 551 590552 - 590540 - g 75 -7.7 -3.90045 | overlap 590535 CAATATGAAATAGAA GAGCA GTT TGCTC TTGAAGTTGGCGAGA TERM 552 590714 - 590735 + G 88 -10.3 -3.40403 | AAAAAAATCAACGTT CTTTTTTGG CAAC CCAAAAAAG TTATCCTCAAGCAAG BB0577 590348 - 590935 + | hypothetical protein TERM 553 590937 - 590964 + F 75 -8.8 -3.20991 | opp_overlap 590937 590932, overlap 590938 590954 TAAAAAGAAAGTAAA TTTAATTTAAAA TTAG TTTTAAATTAAA TTAAATTAAATTAAA TERM 554 590964 - 590937 - f 84 -8.8 -4.35747 | opp_overlap 590937 590938 590954, overlap 590932 TAAAAAGAAAGTAAA TTTAATTTAAAA TTAG TTTTAAATTAAA TTAAATTAAATTAAA TERM 555 591221 - 591197 - g 80 -5.9 -5.14563 | opp_overlap 591190 CCCTTTATGAAAAAA TTTTCGTTTTT TAA AAAAAAGAAAA AAGCTGTTGATTTAA TERM 556 592073 - 592090 + G 72 -6.3 -4.30995 | opp_overlap 592069, overlap 592069 ATTCAGACAGATGCT TCCAAGC ATGG GTTTGGA TTGTTTTATAAAGGA BB0578 591188 - 592357 + | methyl-accepting chemotaxis protein (mcp-1) TERM 557 592610 - 592590 - g 100 -11.3 -5.79588 | opp_overlap 592595 TCAAAAGCAAAAAAA TGCAATATG TCG CATATTGCA TTAACAGATCATGGC TERM 558 592691 - 592679 - g 70 -7.7 -3.44825 | AAAAGCAGGAATTAA GCCAA TAA TTGGC ATTGAAGCCTATATG dnaE 592446 - 595931 + | DNA polymerase III subunit alpha BB0580 595943 - 596521 + | hypothetical protein BB0581 596531 - 598591 + | DNA recombinase (recG) BB0582 599376 - 598588 - | carboxypeptidase, putative TERM 559 599029 - 599057 + g 80 -5.5 -5.24551 | TTTTTTTGCATCTTT TATTAGTCGAA TTAAATC TTCGATTAATA TTTTTCTTACTTTAA TERM 560 599753 - 599743 - g 77 -5.4 -5.10029 | AGCAATTGCAAAAAA GAAG TTT CTTC AAGTAAGACAATCTT BB0583 599495 - 600844 + | hypothetical protein TERM 561 601818 - 601839 + G 84 -5.9 -5.30448 | opp_overlap 601820, overlap 601820 GAATTGATACTCATA AATATGCTG CTTA CAGCATATC TTTTTCTATTTATTT TERM 562 601820 - 601837 + G 81 -8.5 -4.23487 | opp_overlap 601820, overlap 601818 ATTGATACTCATAAA TATGCTG CTTA CAGCATA TCTTTTTCTATTTAT TERM 563 601837 - 601820 - g 80 -8.5 -3.9534 | opp_overlap 601818 601820 ATTGATACTCATAAA TATGCTG CTTA CAGCATA TCTTTTTCTATTTAT BB0584 600998 - 602344 + | hypothetical protein BB0585 602374 - 603729 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) BB0586 604769 - 603726 - | femA protein (femA) TERM 564 604331 - 604319 - G 72 -6.3 -4.42238 | opp_overlap 604319 604318 TCATGTTAAGCAAAA TCTCT TCA AGAGA ATTATTTAAGTTTAA metG 606983 - 604779 - | methionyl-tRNA synthetase TERM 565 606643 - 606666 + g 72 -6.2 -4.4195 | overlap 606654 TCTTTTATATAGCCG TTTTTTTCTA ATTG TAGGAAAAAA TTTTGTACAATGTCT BB0588 607138 - 607935 + | pfs protein (pfs-2) TERM 566 607966 - 608010 + F 82 -9.7 -3.47583 | opp_overlap 607966, overlap 607970 607982 TATAATTGAAAATCA TGTATGAAAAAAGATTTTTTA TTT TAAAATGTCTTTTTTTATGCA TTATCAATTGTGTTG TERM 567 608882 - 608896 + G 71 -8.6 -2.89995 | overlap 608881 608879 608884 GTAGAGAATCTTTAG TAGCAG GTT CTGCTA ATGTTTTAATATTTC BB0589 608020 - 609078 + | phosphate acetyltransferase (pta) ksgA 609906 - 609061 - | dimethyladenosine transferase TERM 568 609932 - 609946 + r 89 -4.4 -6.02546 | ATAATGACAGATATT TTAAAA TTA TTTTAA TTTTTTTTAGTTTCG BB0591 611193 - 609943 - | competence locus E, putative TERM 569 610981 - 610993 + g 93 -3.5 -6.21477 | overlap 610980 ATTTTTAATGTTTGT TATTT GAT AAATA TTTTTTTTTAATGTT TERM 570 611337 - 611355 + G 70 -6 -4.42962 | AAAATAAATATCCAT TCAAGCGG GCT TTGCTTGA TCTTTTTTTGGTCTA TERM 571 611428 - 611439 + G 77 -3 -5.63236 | overlap 611431 AGAATTTTGGAATGT TGAT GAAA ATCA TTTTTATTTTTGGAT BB0592 611309 - 612022 + | hypothetical protein TERM 572 613411 - 613389 - g 72 -4.8 -4.87665 | opp_overlap 613406 613409 CCTTATGGAGAAAAA GGCGAGCT TTGGGTC AGGTCGCC ACAAATAATGAGTGG TERM 573 613918 - 613906 - g 70 -4.9 -4.74103 | CTCTTAAGTTAAAAA GATAT TAT ATATC CAAAAAGTATGAAGA BB0593 612048 - 613985 + | long-chain-fatty-acid CoA ligase TERM 574 613982 - 614018 + T 100 -12 -4.64766 | gap 1, opp_overlap 613985 613990, overlap 613982 613983 613985 AGATTTAAACGGATA T-TAGGCAAGAAAATTT TGTA AAATTTTCTTGCCTACA TTTTTAACATATAGG TERM 575 613982 - 614017 + T 100 -13.6 -3.38378 | opp_overlap 613985 613990, overlap 613982 613983 613985 AGATTTAAACGGATA TTAGGCAAGAAAATTT TGTA AAATTTTCTTGCCTAC ATTTTTAACATATAG TERM 576 613983 - 614016 + T 100 -17.1 -2.62545 | opp_overlap 613985 613990, overlap 613982 613982 613985 GATTTAAACGGATAT TAGGCAAGAAAATTT TGTA AAATTTTCTTGCCTA CATTTTTAACATATA TERM 577 613985 - 614014 + T 100 -15.3 -2.84617 | opp_overlap 613985 613990, overlap 613983 613982 613982 TTTAAACGGATATTA GGCAAGAAAATTT TGTA AAATTTTCTTGCC TACATTTTTAACATA TERM 578 614014 - 613985 - T 100 -15.3 -2.68532 | opp_overlap 613985 613983 613982 613982, overlap 613990 TTTAAACGGATATTA GGCAAGAAAATTT TGTA AAATTTTCTTGCC TACATTTTTAACATA argS 615789 - 614014 - | arginyl-tRNA synthetase BB0595 616390 - 615764 - | hypothetical protein BB0596 618559 - 616412 - | methyl-accepting chemotaxis protein (mcp-2) TERM 579 617648 - 617675 + g 78 -8 -3.88777 | AAGCGAAACCAATCT CATATTTTTAAA TTCT TTTGAAAATATG TTGTTATAATCTATT TERM 580 620241 - 620263 + G 71 -7.8 -3.56985 | opp_overlap 620242, overlap 620239 620242 AAATATATATCAGAA ATCTCTTCAA ATT TTGAAGAGAG TGTTAGTTTTTTCTA TERM 581 620262 - 620242 - g 95 -11.3 -4.05991 | opp_overlap 620241 620239 620242 AATATATATCAGAAA TCTCTTCAA ATT TTGAAGAGA GTGTTAGTTTTTTCT TERM 582 620242 - 620262 + G 87 -11.3 -2.72564 | opp_overlap 620242, overlap 620241 620239 AATATATATCAGAAA TCTCTTCAA ATT TTGAAGAGA GTGTTAGTTTTTTCT BB0597 618828 - 621035 + | methyl-accepting chemotaxis protein (mcp-3) BB0598 621953 - 621045 - | UDP-N-acetylmuramate dehydrogenase (murB) TERM 583 623184 - 623218 + G 100 -11.6 -5.3104 | opp_overlap 623181 623189, overlap 623186 623189 GAGATAATTAAATCT GACAATCTAAGCTTTG TTT CAAAGCTTAGATTAGC TTTTATTTTTGATGA TERM 584 623186 - 623217 + G 100 -12.6 -3.76997 | gap 1, opp_overlap 623181 623189, overlap 623184 623189 GATAATTAAATCTGA C-AATCTAAGCTTTG TTT CAAAGCTTAGATTAG CTTTTATTTTTGATG TERM 585 623189 - 623213 + G 100 -14.5 -3.5268 | opp_overlap 623181 623189, overlap 623186 623184 AATTAAATCTGACAA TCTAAGCTTTG TTT CAAAGCTTAGA TTAGCTTTTATTTTT TERM 586 623213 - 623189 - g 100 -14.5 -3.40784 | opp_overlap 623189 623186 623184, overlap 623181 AATTAAATCTGACAA TCTAAGCTTTG TTT CAAAGCTTAGA TTAGCTTTTATTTTT BB0599 622005 - 623447 + | cysteinyl-tRNA synthetase (cysS) TERM 587 624738 - 624767 + G 77 -2.3 -5.81412 | overlap 624736 TATGATTCTAATTCT CTTAAATTAAAAG AGCA TTTTTGGTTTGAG TTTTTTTTAGCTGGG BB0600 623451 - 625007 + | hypothetical protein TERM 588 625280 - 625302 + G 88 -10.6 -3.38812 | opp_overlap 625300, overlap 625279 CATAGCGGATCTCAG GCCAATATGG CTG CCATAATGGC TCTTATTAGCCCGGG BB0601 625007 - 626260 + | serine hydroxymethyltransferase (glyA) TERM 589 626455 - 626479 + G 73 -2.9 -5.5112 | CATATTCTAGATCTA GAGAGTTTGAA TTT TATAAACTTTC TTTTTTATTAATGGC BB0602 626286 - 627038 + | chaperonin, putative TERM 590 627066 - 627083 + T 100 -11.3 -4.44284 | opp_overlap 627066 TTTAAAGATAAAAAA GAAGGGC CAAA GCCCTTC TTTTGCTGTTAGCTT TERM 591 627083 - 627066 - T 100 -11.3 -5.56264 | opp_overlap 627066 TTTAAAGATAAAAAA GAAGGGC CAAA GCCCTTC TTTTGCTGTTAGCTT BB0603 628948 - 627092 - | membrane-associated protein p66 TERM 592 628879 - 628905 + g 87 -11.6 -2.72991 | overlap 628881 CTTTTTCCTTTAATG CGTCTGCTGCAA ATA TTGCTGCAGATG TGGTTAAAAATATGA TERM 593 628881 - 628903 + g 83 -10.6 -2.90901 | overlap 628879 TTTTCCTTTAATGCG TCTGCTGCAA ATA TTGCTGCAGA TGTGGTTAAAAATAT TERM 594 629143 - 629180 + r 100 -11.8 -4.24294 | opp_overlap 629143 629147 629150 629152 629156 629157, overlap 629147 629174 TATTATTCAAATCTA TAAATAAGATTAATTT TAGTAT AAATTAATCTTATTTA TTTTAAATGATTAAT TERM 595 629180 - 629143 - R 86 -11.8 -2.66748 | opp_overlap 629143 629147 629174, overlap 629147 629150 629152 629156 629157 TATTATTCAAATCTA TAAATAAGATTAATTT TAGTAT AAATTAATCTTATTTA TTTTAAATGATTAAT TERM 596 629147 - 629176 + r 85 -8.2 -4.6951 | opp_overlap 629143 629147 629150 629152 629156 629157, overlap 629143 629174 ATTCAAATCTATAAA TAAGATTAATTT TAGTAT AAATTAATCTTA TTTATTTTAAATGAT TERM 597 629176 - 629147 - R 79 -8.2 -4.02534 | opp_overlap 629147 629143 629174, overlap 629143 629150 629152 629156 629157 ATTCAAATCTATAAA TAAGATTAATTT TAGTAT AAATTAATCTTA TTTATTTTAAATGAT TERM 598 629205 - 629157 - R 75 -9.6 -2.70213 | gap 2, opp_overlap 629147 629143 629174, overlap 629150 629147 629143 629156 629152 ATAAATAAGATTAAT TTTAGTATAAATTAATCTTATTTA TTT TAAAT--GATTAATTTATACTAAA TAAACTAGCAATCCT BB0604 630698 - 629196 - | L-lactate permease (lctP) TERM 599 631737 - 631757 + G 74 -4 -5.35365 | overlap 631738 631749 TACAGTGGATACAGT TGCTCTTT TTTCT AAAGAGCC TTTTTATTATATTTT TERM 600 631738 - 631756 + G 73 -7.5 -3.77559 | overlap 631737 631749 ACAGTGGATACAGTT GCTCTTT TTTCT AAAGAGC CTTTTTATTATATTT BB0605 630769 - 631986 + | serine-type D-Ala-D-Ala carboxypeptidase (dacA) BB0606 631991 - 632482 + | chemoreceptor glutamine deamidase CheD TERM 601 632845 - 632860 + G 74 -6.2 -4.45544 | opp_overlap 632843 632838 GACAATGATAGAATC TCTCTT CTTA AAGAGA TTTTACTTGATGAGG TERM 602 633386 - 633375 - g 84 -5.8 -5.2894 | overlap 633377 AAATAGAAAAGAAAA GACC TTGT GGTC CTCAAAGATGTGTAG TERM 603 634064 - 634053 - g 71 -4.4 -4.95876 | opp_overlap 634061 AAGCATAATTAAAAA TTGG GAAT CCAA ACAATTTGGTGAGTT BB0607 632485 - 634464 + | rep helicase, single-stranded DNA-dependent ATPase (rep) TERM 604 634675 - 634687 + G 70 -6.3 -4.20868 | opp_overlap 634674 TTATTAAGCAGAGAG CCAAA AAA TTTGG TTATTCTTTTAAAGA BB0608 634581 - 636011 + | aminoacyl-histidine dipeptidase (pepD) TERM 605 636047 - 636072 + T 100 -8.5 -5.34632 | opp_overlap 636030, overlap 636030 TTATTATAAATTTTT TAATAAAAGTC TTAT GGCTTTTATTA TTTTTATCTTTTATT BB0609 636134 - 636024 - | hypothetical protein TERM 606 637075 - 637060 - g 70 -4.8 -4.78848 | overlap 637042 TCTTCAAATAGAAAA TTCAAT TATC ATTGAA GATGAGGAAGGAGTT TERM 607 637313 - 637290 - g 70 -8.3 -3.00651 | overlap 637289 TTGCAGATTACAAAT TTGAAGAAC TTGCGG GTTCTTCAA GAAAATTGAAGATTA TERM 608 637926 - 637916 - g 71 -4 -5.12707 | GTAAAGGGTAAAAAA CTAA ATT TTAG AGATTTTGTTAATTA tig 636593 - 637957 + | trigger factor BB0611 637963 - 638556 + | ATP-dependent Clp protease proteolytic component (clpP-1) TERM 609 639164 - 639152 - gf 78 -2.7 -5.77853 | AATTGCTAAAAAAAA TGAAA ACG TCTCA ATAACAAGAGATGTT clpX 638580 - 639872 + | ATP-dependent protease ATP-binding subunit BB0613 639808 - 642249 + | ATP-dependent protease LA (lon-2) BB0614 642289 - 642441 + | hypothetical protein TERM 610 642479 - 642432 - T 71 -7.3 -3.88259 | opp_overlap 642447, overlap 642433 642447 AAAGGGTAAAAAAAG GGGTAAATAAAAAAAGTGGCT TTAATT AGCCACTTTTTTTATTTAATA ACACAGAAATAAAAG TERM 611 642478 - 642433 - T 82 -10.8 -2.91328 | opp_overlap 642447, overlap 642432 642447 AAGGGTAAAAAAAGG GGTAAATAAAAAAAGTGGCT TTAATT AGCCACTTTTTTTATTTAAT AACACAGAAATAAAA TERM 612 642464 - 642447 - T 95 -7 -5.95539 | opp_overlap 642447, overlap 642433 642432 GGGTAAATAAAAAAA GTGGCT TTAATT AGCCAC TTTTTTTATTTAATA TERM 613 642447 - 642464 + T 100 -7 -5.99154 | opp_overlap 642447 642433 642432 GGGTAAATAAAAAAA GTGGCT TTAATT AGCCAC TTTTTTTATTTAATA rpsD 643129 - 642500 - | 30S ribosomal protein S4 BB0616 644650 - 643295 - | hypothetical protein TERM 614 644824 - 644812 - g 79 -3.5 -5.63857 | AAAAATGTAAAAAAA TTATT TTA AATAA TAATGATTTGCACAG BB0617 644772 - 645140 + | hypothetical protein BB0618 645601 - 645137 - | cytidine deaminase (cdd) BB0619 645689 - 646681 + | hypothetical protein BB0620 648326 - 646659 - | beta-glucosidase, putative TERM 615 647255 - 647265 + g 80 -4 -5.72622 | TTCTTTTATTAGATT CAAT AAT ATTG TTTTTTATTTCTGAA BB0621 648553 - 649107 + | 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein (thiJ) BB0622 650411 - 649170 - | acetate kinase (ackA) TERM 616 649779 - 649789 + g 91 -4 -5.95539 | CAATATTATTAAATT TAGA CTA TCTA TTTTTTTATTTAAAA BB0623 653790 - 650413 - | transcription-repair coupling factor (mfd) TERM 617 650474 - 650502 + g 100 -12.1 -4.8048 | opp_overlap 650480 ATTTTTTCAGATTTT TCAATATTTTTAA AGC TTAAAAATATTGA TTTTTGATATGAGGG TERM 618 651211 - 651226 + g 72 -6.2 -4.38637 | TATTGTATTTGCATT TGGAAT ATCT ATTCCA TTTTCAATTATTGTT TERM 619 652094 - 652108 + g 75 -8.6 -3.37141 | AATTCATTATCTTCT GGGTAT TTA ATACCC TTAATGCTTTCTCTT TERM 620 652332 - 652343 + g 76 -4.4 -5.33331 | CAATATAATCCTTTT CAAG AGAG CTTG TTTTTATTCTCTTTA TERM 621 652455 - 652465 + g 71 -4 -5.04249 | overlap 652442 TTGTTTTTGAAGATT CAAA GGC TTTG TTTATTTTTTGCCCC TERM 622 653965 - 653982 + GH 87 -7.1 -5.17353 | opp_overlap 653958, overlap 653958 GGAGATTACAAGGGC CTTGATT TTAA AATCAAG TTTTTTAATCAATCT BB0624 653887 - 654849 + | hypothetical protein TERM 623 655662 - 655644 - gT 84 -4.7 -5.68039 | opp_overlap 655644 655646 AAATTGAGAAAAAAA TAGATAA TAAGT TTATCTA TCATTCAGTTGCTGT TERM 624 655808 - 655781 - gT 87 -8 -4.77438 | opp_overlap 655781 ATGCACGATCAAAAA TTGAAAATTTTT GATA AAAAACTTTCAA TTGATTCTTCTATAA TERM 625 656160 - 656130 - gT 75 -8.4 -3.49077 | opp_overlap 656131 656135 656135 CTTATAAAAAGGCAA CCCAGCTTTTCAAA AGT TTTGAAAAGTTGGT AAATTCTAGGTTTAA TERM 626 656131 - 656159 + GT 100 -14.1 -2.62316 | opp_overlap 656130, overlap 656135 656135 TTATAAAAAGGCAAC CCAGCTTTTCAAA AGT TTTGAAAAGTTGG TAAATTCTAGGTTTA TERM 627 656135 - 656155 + GT 85 -9.9 -3.23711 | opp_overlap 656130, overlap 656131 656135 AAAAAGGCAACCCAG CTTTTCAAA AGT TTTGAAAAG TTGGTAAATTCTAGG BB0625 654809 - 656902 + | N-acetylmuramoyl-L-alanine amidase, putative BB0626 657543 - 656998 - | hypothetical protein BB0627 658817 - 657546 - | putative aminopeptidase 2 BB0628 658898 - 659623 + | hypothetical protein TERM 628 659626 - 659667 + T 100 -9 -5.055 | opp_overlap 659637, overlap 659629 659631 659666 ATTAGTTTATTGACT GGGTTCAAGAATATAAAC TTAATC GTTTATATTCTTGTATTC TTTTTTAAGGATTCC TERM 629 659629 - 659664 + T 93 -9.3 -4.62085 | opp_overlap 659637, overlap 659626 659631 AGTTTATTGACTGGG TTCAAGAATATAAAC TTAATC GTTTATATTCTTGTA TTCTTTTTTAAGGAT TERM 630 659631 - 659662 + T 100 -11.9 -3.91465 | opp_overlap 659637, overlap 659629 659626 TTTATTGACTGGGTT CAAGAATATAAAC TTAATC GTTTATATTCTTG TATTCTTTTTTAAGG BB0629 661524 - 659644 - | PTS system, fructose-specific IIABC component (fruA-2) BB0630 661606 - 662529 + | 1-phosphofructokinase (fruK) TERM 631 662567 - 662592 + T 100 -13.5 -4.14598 | opp_overlap 662565 662564 TTGATTTTGAAACTT TACTGTAGCTT TTAA AAGCTACAGTA TTTAGTTTGCTTAAA BB0631 662917 - 662603 - | hypothetical protein BB0632 665011 - 663179 - | exodeoxyribonuclease V, alpha chain (recD) TERM 632 663434 - 663447 + g 82 -2.5 -5.9667 | TTCATAATTTGTTAG TAAAT CTAA ATTTA TTTTTTTATATTTTT BB0633 668517 - 665008 - | exodeoxyribonuclease V, beta chain (recB) TERM 633 665424 - 665439 + g 70 -4.8 -4.66833 | CTTCAAAGTGTTTGT CAAAAA GATA TTTTTG TTTTTGAAATTCAGG TERM 634 666080 - 666066 - G 71 -4.2 -5.18726 | opp_overlap 666066 TTTTTATAATAAAAA GAGCAA ATT TAGCTC TTGTTGCTCCCACAT TERM 635 667080 - 667099 + g 77 -2.9 -5.72207 | overlap 667069 667081 TTTCTTGTCCGTTGA TGACAAT TTTATT ATTGTCG TTTTTTTGATTTGGA BB0634 671763 - 668848 - | exodeoxyribonuclease V, gamma chain (recC) TERM 636 669099 - 669123 + g 75 -3.7 -5.55855 | TTTTTAATTCAAATT CTATATTTTTA TTT TGAAAATTTAG TTTTATTTTTTTGCA TERM 637 669136 - 669152 + g 91 -8.1 -4.99861 | overlap 669131 TAGTTTTATTTTTTT GCAAAAT TTA ATTTTGC TTTTTGTCATTGCTG TERM 638 669160 - 669193 + g 75 -7.5 -4.05172 | opp_overlap 669171, overlap 669157 669161 AATTTTGCTTTTTGT CATTGCTGAAAGCTT TTTT AAGCTTTCAGCAGCA TTATATTTTAATTTA TERM 639 669161 - 669192 + g 88 -11 -3.01476 | opp_overlap 669171, overlap 669160 669157 ATTTTGCTTTTTGTC ATTGCTGAAAGCTT TTTT AAGCTTTCAGCAGC ATTATATTTTAATTT TERM 640 669695 - 669709 + g 77 -2.9 -5.5943 | overlap 669702 669704 TTTTCATTTGGATGC TTTTC TATTT GAAAA TTTTTTTCATACTTT TERM 641 671113 - 671129 + g 74 -2.3 -5.65177 | opp_overlap 671120 671123, overlap 671116 671118 671120 671123 AAAATCAAAAATTTT TTCTAAA GAG TTGAGAA TTTTTTTCTCAATCT BB0635 673212 - 671767 - | nicotinate phosphoribosyltransferase TERM 642 672009 - 671977 - G 73 -7.9 -3.85817 | opp_overlap 671976 671975 671984 AGTGTGCGTTAGAAA TTCAAAATCGTCATA TTG TTTGATGATTTTGAA AATGTTATCTTGTAT TERM 643 672062 - 672113 + g 95 -11.4 -3.89412 | opp_overlap 672060 672065, overlap 672109 TTTCTTGAATTCAGA TGATCTTTGATTTTATCTTTTT CTTCTTTT AAAAATATAAAATCAAGGATCA TTTGGTCATTTAAAT TERM 644 673750 - 673738 - g 77 -6.3 -4.74103 | TTTTTAAGCGAAAAA TTGAC TTT GTCAA AAATAGTTCTTGAGA TERM 645 674580 - 674597 + G 82 -6.3 -5.02074 | TGATGAGGCTTATGA GCGTTTA TTGT TAGACGC TTTTTTAGGAGATGG BB0636 673342 - 674778 + | glucose-6-phosphate 1-dehydrogenase TERM 646 675616 - 675626 + G 77 -5.4 -5.1356 | AACTCAAGGTAGTAG CATC TTA GATG TTTTTATTAGTAGCA TERM 647 676344 - 676360 + G 93 -5.3 -5.75342 | opp_overlap 676353 676354, overlap 676355 TTTTGGGCCTTGATA TAAAAAA AGT TTTTTTA TTTTTTTTAAAAAAA BB0637 675029 - 676378 + | Na+/H+ antiporter (nhaC-1) TERM 648 676355 - 676381 + F 93 -9.8 -4.19276 | opp_overlap 676354 676353 676376, overlap 676344 GATATAAAAAAAGTT TTTTTATTTTTT TTA AAAAAATAAAAA TTTTAAAAATTTTAA TERM 649 676620 - 676603 - g 71 -8.5 -2.924 | overlap 676602 TAATGGTGTAGAAAG GGCATTT TATC AAATGCC TCCCGTAGTTGCTAT TERM 650 677123 - 677133 + G 70 -5.4 -4.4874 | CCAGCAGCAATTTTA GCAA GCA TTGC TTTTGCATTTTTAGG TERM 651 677790 - 677817 + G 73 -4.4 -5.03715 | gap 1, opp_overlap 677804, overlap 677779 CTTTGTCTATAATTG GACTT-GATATTA AGT TAATATTTAAGTC TTTTTTAAAAATAGT BB0638 676472 - 677860 + | Na+/H+ antiporter (nhaC-2) TERM 652 677840 - 677871 + T 100 -10.4 -5.89947 | opp_overlap 677840 AAAATAGTCACAAAA CTTAAAAGCTTTAA ATTT TAAAAGCTTTTAAG TTTTTTTTGAATTTA TERM 653 677871 - 677840 - T 100 -10.4 -4.49781 | opp_overlap 677840 AAAATAGTCACAAAA CTTAAAAGCTTTAA ATTT TAAAAGCTTTTAAG TTTTTTTTGAATTTA BB0639 678938 - 677892 - | spermidine/putrescine ABC transporter, spermidine/putrescine-binding periplasmic protein (potD) BB0640 679750 - 678959 - | spermidine/putrescine ABC transporter, permease protein (potC) BB0641 680563 - 679754 - | spermidine/putrescine ABC transporter, permease protein (potB) TERM 654 679822 - 679804 - G 71 -4 -5.01811 | opp_overlap 679797, overlap 679797 TTATTAAATTAAAAA TTAATATT ACT AACATTAA AATAAATGAAATTGC BB0642 681606 - 680563 - | spermidine/putrescine ABC transporter, ATP-binding protein (potA) TERM 655 681677 - 681694 + r 75 -8.5 -3.63276 | opp_overlap 681677 681691, overlap 681672 TATTATTTATGTAAA TGCCTTT TTTA AAAGGCA TTATAATTCTTATCA TERM 656 681694 - 681677 - R 76 -8.5 -3.67296 | opp_overlap 681677 681672, overlap 681691 TATTATTTATGTAAA TGCCTTT TTTA AAAGGCA TTATAATTCTTATCA TERM 657 681723 - 681691 - R 86 -9.3 -4.07687 | opp_overlap 681677 681672 681698 681701, overlap 681677 ATGCCTTTTTTAAAA GGCATTATAATTCTT ATC AAGAATTATTTTGCC AAATTTACCCTCTCT TERM 658 681698 - 681716 + r 77 -7.6 -4.12942 | opp_overlap 681691, overlap 681672 681701 TTTTAAAAGGCATTA TAATTCTT ATC AAGAATTA TTTTGCCAAATTTAC rbgA 682524 - 681685 - | ribosomal biogenesis GTPase TERM 659 682589 - 682601 + H 74 -4.9 -5.09685 | TAGTTTATGTTAGTT TTCTT TAA AAGAA TTGTTTTTTTTTAAA BB0644 682679 - 683377 + | N-acetylmannosamine-6-phosphate 2-epimerase TERM 660 683492 - 683504 + G 86 -9.1 -4.14392 | ATTGCTATTTTGCCA GCAGC GGG GCTGC TTTTAGGAATTGGAG BB0645 683423 - 684967 + | PTS system, glucose-specific IIBC component (ptsG) TERM 661 684971 - 685009 + T 79 -8.4 -4.07877 | opp_overlap 684980, overlap 684973 684980 CTAGAGGCTTGATTT TTTTAATAAGTAATAGCT TAA GGCTATTACTTATTAATC TTGTTTATGAAATCA TERM 662 684973 - 685007 + T 100 -15.4 -3.63097 | opp_overlap 684980, overlap 684971 684980 AGAGGCTTGATTTTT TTAATAAGTAATAGCT TAA GGCTATTACTTATTAA TCTTGTTTATGAAAT TERM 663 685000 - 684980 - T 75 -8.4 -3.62046 | opp_overlap 684973 684971 684980 TGATTTTTTTAATAA GTAATAGC TTAAG GCTATTAC TTATTAATCTTGTTT TERM 664 684980 - 685000 + T 81 -9.1 -3.86781 | opp_overlap 684980, overlap 684973 684971 TGATTTTTTTAATAA GTAATAGCT TAA GGCTATTAC TTATTAATCTTGTTT BB0646 685980 - 684997 - | hypothetical protein BB0647 686507 - 685977 - | ferric uptake regulation protein (fur) BB0648 688295 - 686607 - | serine/threonine kinase, putative TERM 665 686638 - 686656 + g 77 -6.2 -4.75776 | opp_overlap 686646, overlap 686623 TTTTTTATATTAGTA TAAAAAAT TAA ATTTTTTA TTTTTGAATTCAGTT TERM 666 687169 - 687179 + g 71 -4 -5.01732 | opp_overlap 687169 TCATCTATAAAAAAA TCAA TTG TTGA TTTTTTGGCAGAGTT TERM 667 687179 - 687169 - G 80 -4 -5.64274 | opp_overlap 687169 TCATCTATAAAAAAA TCAA TTG TTGA TTTTTTGGCAGAGTT TERM 668 687210 - 687223 + g 71 -2.5 -5.37593 | AAAAGCTAAATATTG TTTTA TTCC TAAAA TTTTTTCATTTGAGA TERM 669 688141 - 688162 + g 74 -6.7 -4.40358 | opp_overlap 688141 688145 AGAATTTCAAAAAAG TATATTGGA AATG TCCAATGTA TTTTGTAAGCTAGCT TERM 670 688190 - 688208 + g 70 -7.6 -3.44284 | overlap 688188 GCTGTTTGTGTTCAA TCAAATAT TTT ATATTTGA TATTATTAATAACAG TERM 671 688414 - 688402 - H 70 -7.7 -3.32023 | opp_overlap 688400 688398, overlap 688400 TGCATAGAAGTAATA CGCTA CTA TAGCG AATGTATTAAGTTTA TERM 672 688982 - 688971 - g 73 -4.4 -5.08169 | ATATAGGTGAAAAAA TTGC TGAG GCAA TGGATAAAGTTGGAA TERM 673 689594 - 689576 - g 71 -2.4 -5.40464 | overlap 689577 TATGATAAAGAAAAA CTTCAAGA GCG TCTTGCAA AACTTGTTGGCGGAG groEL 688490 - 690127 + | chaperonin GroEL TERM 674 690135 - 690169 + F 76 -5.9 -4.89477 | gap 1, opp_overlap 690135 690134 690129, overlap 690136 TGATGTAAATTAAAG T-TTCACCGGCAAG CTTGTGTT TTTGCCGGTGAATA TTTTATTATTCAAAG TERM 675 690136 - 690167 + F 100 -11 -4.06582 | opp_overlap 690135 690134 690129, overlap 690135 GATGTAAATTAAAGT TTCACCGGCAAG CTTGTGTT TTTGCCGGTGAA TATTTTATTATTCAA BB0650 690151 - 690489 + | hypothetical protein BB0651 690482 - 690799 + | hypothetical protein secD 690885 - 692645 + | preprotein translocase subunit SecD secF 692629 - 693528 + | preprotein translocase subunit SecF TERM 676 693980 - 693970 - g 91 -6.8 -5.4477 | opp_overlap 693970 693969 AAATTTTGAAAAAAA GAGC AAG GCTC CATTTTCTTGCATAA TERM 677 694493 - 694509 + G 74 -2.3 -5.63374 | TCTACTATAAATTCT GGAAATT GGA AATTTGC TTTTTTTACTCTTGC BB0654 693554 - 694696 + | hypothetical protein BB0655 695523 - 694693 - | heat shock protein (dnaJ-2) TERM 678 696149 - 696162 + G 73 -5.3 -4.66535 | overlap 696145 AGAATTGCTTTCATA TATGC CTGA GCATA TTTGTTTTAGCGATT BB0656 695631 - 696764 + | oxygen-independent coproporphyrinogen III oxidase, putative BB0657 697437 - 696751 - | ribose 5-phosphate isomerase (rpi) TERM 679 697408 - 697421 + g 76 -3.9 -5.46698 | overlap 697417 GTGATCAATTGCATG TTTTG CTAC CAAAA TTTTTTGATTTTCCA BB0658 697571 - 698332 + | phosphoglycerate mutase (gpmA) TERM 680 698379 - 698358 - T 79 -8.9 -3.73107 | opp_overlap 698358, overlap 698361 GTATTAAAGTGTAAA TAAGTCATA TAAT TATGACTTA TTTTTTATTAATTTT TERM 681 698358 - 698379 + T 100 -8.9 -5.61689 | opp_overlap 698358 698361 GTATTAAAGTGTAAA TAAGTCATA TAAT TATGACTTA TTTTTTATTAATTTT lysK 699965 - 698400 - | lysyl-tRNA synthetase TERM 682 699226 - 699243 + g 82 -9.1 -3.73042 | overlap 699225 GATGTATCAAAACTG CCGCCAC TGCT GTGGTGG TCTTTTCCTGCAGGC TERM 683 699449 - 699459 + g 73 -5.4 -4.6635 | TACAAAATACACTGA TTGG ATA CCAA TTTTCTTCAAGCTTT era 700924 - 700052 - | GTP-binding protein Era BB0661 701014 - 701385 + | hypothetical protein BB0662 701395 - 701805 + | hypothetical protein TERM 684 702181 - 702199 + G 78 -7.4 -4.51196 | GGTAAGGTATGCTCT TGAGCTTC CAA GGGGCTCA TTTTCTAAATTTCAA BB0663 701825 - 702274 + | hypothetical protein BB0664 702966 - 702283 - | hypothetical protein BB0665 703009 - 703968 + | hypothetical protein TERM 685 704828 - 704812 - gf 100 -8 -5.4505 | opp_overlap 704810 704812 GTTTGTAATAAAAAA CAGCAG TATGC CTGCTG TGTTGATTGAAATGG TERM 686 704812 - 704828 + GF 71 -8 -3.24825 | opp_overlap 704812, overlap 704810 GTTTGTAATAAAAAA CAGCAG TATGC CTGCTG TGTTGATTGAAATGG BB0666 703931 - 704959 + | hypothetical protein TERM 687 705104 - 705120 + G 86 -4.5 -5.85244 | opp_overlap 705104 705105, overlap 705105 TTTAAATTATGATAA TCTTTTT TCA AAAAAGG TTTTTTATTTTCATT TERM 688 705203 - 705217 + G 80 -5.8 -5.07652 | opp_overlap 705201 GAAAGATAATTTAGA TCTTTT AGT AAAAGA TTTTCTTTTAGGAAG BB0667 704949 - 705500 + | hypothetical protein TERM 689 705594 - 705606 + G 93 -3.5 -6.17268 | CATGAAAAGGAAAGC TAAAA GTA TTTTA TTTTTTTTATTATCC BB0668 705571 - 706605 + | flagellar filament outer layer protein (flaA) TERM 690 706654 - 706613 - f 95 -12.7 -3.60431 | gap 1, opp_overlap 706619 AAAATTAGGTTTAAA TTAATATGTAAAGC-TACCT AAA AGGTTTGCTTTACATATTAA AATAATAGGAAATAG TERM 691 707293 - 707263 - g 86 -7 -5.09173 | TAATATTTTAAAAAA TTTAGGATCTGTAC TTC ATACAATTCCTAAA TATGAGCAAATCATA TERM 692 708188 - 708201 + G 71 -3.9 -5.06103 | CTTAAGGATATATCT GAATT GAGA AATTC TTTTTTCAGACTTCT TERM 693 708377 - 708361 - g 74 -6.7 -4.27211 | TTCAAAGAAATTAAA TAAGATT GTG AATCTTA AAATGGAAGGGGAAG BB0669 706673 - 709267 + | chemotaxis histidine kinase (cheA-2) BB0670 709274 - 710674 + | purine-binding chemotaxis protein (cheW-3) BB0671 710686 - 711171 + | chemotaxis operon protein (cheX) BB0672 711211 - 711651 + | chemotaxis response regulator (cheY-3) BB0673 712207 - 711692 - | hypothetical protein BB0674 713250 - 712204 - | hypothetical protein BB0675 714107 - 713244 - | hypothetical protein TERM 694 713949 - 713961 + g 70 -4.9 -4.76041 | opp_overlap 713960 TAGGTCTTTTATTTC TGATT CAA AATCA TTTTTGATAAATGTA BB0676 714766 - 714104 - | phosphoglycolate phosphatase (gph) TERM 695 714425 - 714452 + g 89 -10 -3.80511 | opp_overlap 714433 TTCGTGGTTCTTATT GCTTAAAATTCC AATT GGAATGTTAAGC TTATTCATAGTTTCT TERM 696 714526 - 714547 + g 74 -3.9 -5.21236 | gap 1 GGTTTTTATTGTATT CTTTAACAAA TTC TTTGT-AAAG TTTTTCTTGTAAATT TERM 697 715741 - 715729 - g 72 -6.3 -4.39287 | TTAATGATAGGAAAA GAAGT TGC ACTTC GCTCATCTAAAATTA BB0677 715009 - 716619 + | ribose/galactose ABC transporter, ATP-binding protein (mglA) BB0678 716620 - 717771 + | ribose/galactose ABC transporter, permease protein (rbsC-1) TERM 698 718492 - 718509 + GF 70 -7.1 -3.65722 | AATAGGCAGTTTTTT GTTTTCA TTTG TGAAAAC TTTGGCAATTGTTTT BB0679 717734 - 718669 + | ribose/galactose ABC transporter, permease protein (rbsC-2) TERM 699 720112 - 720099 - g 71 -2.4 -5.46698 | GTTAAAATGAAAAAA GCTA TTTCTG TAGC AATTTCTAGTGTTTT BB0680 718827 - 721088 + | methyl-accepting chemotaxis protein (mcp-4) TERM 700 721390 - 721407 + G 72 -7.1 -3.9461 | AAAGGTTGAGCTTTA TTTCAGA TCAA TCTGAAA TTCTTATTCAAACCG TERM 701 722384 - 722365 - g 70 -7.9 -3.33833 | AAATAGCAAATGCAA GCCAGAA TTTAAG TTCTGGC GCTGTTGAGCAGGCT BB0681 721110 - 723020 + | methyl-accepting chemotaxis protein (mcp-5) trmU 724130 - 723063 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 702 724782 - 724766 - gH 75 -3.7 -5.47218 | opp_overlap 724766 TTTGATTGAAAAAAA TCCAAAG CTA CTTTCGA TCAATTTATCTGAAT BB0683 724224 - 725447 + | 3-hydroxy-3-methylglutaryl-CoA synthase BB0684 725413 - 726495 + | isopentenyl pyrophosphate isomerase TERM 703 726560 - 726570 + GF 91 -4 -5.9873 | opp_overlap 726560 AGTTTTTTGGAATTA TCTT ATA AAGA TTTTTTTTATAATAA TERM 704 726697 - 726676 - gf 75 -5.9 -4.69559 | overlap 726688 AAATTTGAAAATAAA TGGCAAATA CTAT TCTTTGCCA ATTGCAACAGAAGAA TERM 705 726702 - 726722 + GF 100 -12.7 -3.1706 | opp_overlap 726688 726707, overlap 726705 ATTCTTTGCCAATTG CAACAGAAG AAT CTTCTGTTG TTGCTGCCCTAAATT TERM 706 726705 - 726719 + GF 78 -8.6 -3.7282 | opp_overlap 726688 726707, overlap 726702 CTTTGCCAATTGCAA CAGAAG AAT CTTCTG TTGTTGCTGCCCTAA BB0685 726458 - 727753 + | 3-hydroxy-3-methylglutaryl-CoA reductase (mvaA) TERM 707 728352 - 728368 + G 81 -2.3 -6.06723 | overlap 728354 TCTAGTAAAAAGATT TTTAAAG ACG CTTTATA TTTTTTTTTAAAAAA TERM 708 728354 - 728366 + G 70 -4.9 -4.69028 | overlap 728352 TAGTAAAAAGATTTT TAAAG ACG CTTTA TATTTTTTTTTAAAA BB0686 727737 - 728675 + | mevalonate pyrophosphate decarboxylase BB0687 728666 - 729619 + | phosphomevalonate kinase, putative TERM 709 730114 - 730139 + G 71 -7.8 -3.53563 | opp_overlap 730114 730113 GCAATAAAAAGAGAT TTAACAACTA AAGAAA TAGTTGTTAA TTTGAAAAAAGATCT BB0688 729613 - 730506 + | mevalonate kinase BB0689 731099 - 730632 - | hypothetical protein TERM 710 731461 - 731448 - g 77 -5.3 -5.15634 | opp_overlap 731453 731455 GAGTTTATGAAAAAA TCCTT TATT AAGGA GCTTGATATTGAATC BB0690 731151 - 731720 + | neutrophil activating protein (napA) TERM 711 733262 - 733289 + G 75 -7.2 -4.19506 | opp_overlap 733266, overlap 733263 AAGTTTTTGAGTTTA ACAATATTTTTG CTGG CAAAAATATTGA TTTTAAAATTGGAAT TERM 712 733263 - 733288 + G 88 -10.7 -3.11222 | opp_overlap 733266, overlap 733262 AGTTTTTGAGTTTAA CAATATTTTTG CTGG CAAAAATATTG ATTTTAAAATTGGAA BB0691 731794 - 733803 + | elongation factor G BB0692 733809 - 733922 + | hypothetical protein BB0693 734081 - 735289 + | xylose operon regulatory protein (xylR-1) TERM 713 735275 - 735296 + F 73 -2.3 -5.80248 | TTTTATTTGACTGGA GGAGATATT GATT AATATTGCC TTTTTTTGTATCTTA TERM 714 736008 - 735974 - g 82 -2.8 -6.08563 | opp_overlap 735979 735980, overlap 735980 AAGAGATAAAAAAAA TAAAGGGGATTTTGCG ACC CGCAGAAACCATTTTA GTAGTAGACTCTATG TERM 715 735980 - 736002 + G 74 -8.4 -3.18024 | opp_overlap 735980 735974, overlap 735979 TAAAAAAAATAAAGG GGATTTTGCG ACC CGCAGAAACC ATTTTAGTAGTAGAC BB0694 735343 - 736686 + | signal recognition particle protein (ffh) rpsP 736699 - 736959 + | 30S ribosomal protein S16 BB0696 736960 - 737208 + | hypothetical protein TERM 716 737249 - 737285 + G 73 -4.6 -5.10601 | opp_overlap 737253, overlap 737253 TATCGTCTTATGGAG TTAATGGGTATGCT AGGGTTAAA AGCATATCCAATAA TTTTTGTGATTTTAT BB0697 737212 - 737712 + | hypothetical protein trmD 737709 - 738428 + | tRNA (guanine-N(1)-)-methyltransferase rplS 738406 - 738771 + | 50S ribosomal protein L19 BB0700 738851 - 738964 + | hypothetical protein BB0701 739144 - 739683 + | hypothetical protein BB0702 739685 - 740176 + | lipopolysaccharide biosynthesis-related protein (kdtB) rpmF 740240 - 740422 + | 50S ribosomal protein L32 BB0704 740446 - 740688 + | acyl carrier protein BB0705 740685 - 741425 + | ribonuclease III (rnc) BB0706 742628 - 741396 - | polynucleotide adenylyltransferase (papS) TERM 717 741962 - 741952 - G 74 -2.6 -5.58454 | overlap 741953 TCTAGATTAAAAAAA TTTT TAA AAAA ATCAACTTTTTTAAG TERM 718 743238 - 743221 - g 75 -7.1 -4.08887 | opp_overlap 743220, overlap 743217 ATTATTCAAAGCAAA GTTCTTA ACTC TAAGAAC AATTTGGAAGATTTT BB0707 742690 - 744516 + | hypothetical protein TERM 719 744732 - 744759 + G 74 -8.8 -3.2661 | opp_overlap 744726, overlap 744726 744755 TCTACTAGACTGATA TTTTTTTATTTT TTGA AAAATAAAAAAA TTAAGTATTATTTAA BB0708 744522 - 744845 + | hypothetical protein TERM 720 744913 - 744923 + F 72 -4 -5.27335 | opp_overlap 744913 TTTTATTTTTATAAA CTAA CTA TTAG TTTTTGTTTGCCGAC TERM 721 745224 - 745262 + F 91 -12.8 -2.90075 | opp_overlap 745224 745221 745219, overlap 745237 GGTTATAAAATATGA TGTTAGCTATCAATTAAA AAT TTTAATTGATAGCTAAAG TGTAATTAGCAAAGA TERM 722 745261 - 745224 - f 90 -12.5 -2.98387 | gap 1, opp_overlap 745224 745237, overlap 745221 745219 GGTTATAAAATATGA TGTTAGCTATCAATTAAA AAT TTTAATTGATAGCTAA-A GTGTAATTAGCAAAG TERM 723 745648 - 745636 - g 70 -7.7 -3.33671 | ATATTGATGTTACAA TACCC GAA GGGTA TACTAGCAGAAGAAT TERM 724 746183 - 746194 + G 80 -5.8 -5.00616 | TGCTGGTATTATTTC GCTG CAAG CAGC TTTTTTCCCAAAAAA BB0709 745302 - 746333 + | hypothetical protein TERM 725 746486 - 746502 + G 75 -3.7 -5.4593 | opp_overlap 746488, overlap 746488 CCCTCTTTTTTTGTA AATCCTT TGC AAGGATA TTTTTATTGTTTTGG TERM 726 746488 - 746500 + G 72 -6.3 -4.32946 | opp_overlap 746488, overlap 746486 CTCTTTTTTTGTAAA TCCTT TGC AAGGA TATTTTTATTGTTTT TERM 727 747880 - 747862 - g 93 -4.6 -6.11644 | opp_overlap 747862 GGATTTAAAAAAAAA TTTAAAGG ATA CCTATAAA GTTAGTGAATTTTTT BB0710 746339 - 747910 + | DNA primase (dnaG) BB0711 747925 - 748119 + | hypothetical protein TERM 728 749707 - 749657 - g 72 -6.3 -4.31329 | overlap 749664 749666 TTAAAAAGGTTAAAA CTGTAAAGAGTGTTTCAAGAGAA CCTGT TTCTCTTGAAACACCAATTGGAG AAGAGGAAGATTCTG TERM 729 749699 - 749664 - g 100 -12.9 -3.76413 | gap 1, overlap 749657 749666 GGTTAAAACTGTAAA GAGTGTTTCAAGAGAA CCTGT TTCTCTTGAAACAC-C AATTGGAGAAGAGGA TERM 730 749698 - 749666 - g 100 -16.6 -3.46106 | overlap 749664 749657 TTAAAACTGTAAAGA GTGTTTCAAGAGAA CCTGT TTCTCTTGAAACAC CAATTGGAGAAGAGG TERM 731 749795 - 749760 - g 75 -3.4 -5.5074 | gap 1 TAAGGCAATAAAAAA TCCTGCAAATC-ACACA TCT TTTGTAGTTTTGCAAGA TCAAATAAGAGCAAT BB0712 748123 - 750018 + | RNA polymerase sigma factor RpoD BB0713 750028 - 750789 + | hypothetical protein TERM 732 750987 - 750969 - f 73 -7.4 -4.1466 | opp_overlap 750968 AGGTAAGGGTGAAAA GGTGAGGT AAG AGCTCACC GCTTATTTAGCAATA TERM 733 751596 - 751619 + GF 71 -5.4 -4.56597 | TCTCATAAAGGAGAG TTTTATAGCG AGCT TGCTGTAAAA TTTTTAAAGAAGGCC TERM 734 752064 - 752052 - gf 70 -4.9 -4.66625 | ATATATAGAAAGAAA GATAA AGA TTATC CTAAAGCTAGAAAAT BB0714 751191 - 752159 + | hypothetical protein TERM 735 752773 - 752757 - gf 72 -8.1 -3.16079 | opp_overlap 752756 752755 752757 752759, overlap 752755 GAGCATAATAAAGTA TATGAGA AAT TCTCATA ATATTATAATTGGTC BB0715 752134 - 753219 + | rod shape-determining protein (mreB-1) BB0716 753223 - 754068 + | rod shape-determining protein (mreC) TERM 736 754302 - 754325 + G 71 -7 -3.71848 | opp_overlap 754300 754302 GGGTATACGATAATA TTTTATTTTA ACAA TAAAATAAAA TTATTCATGCCCAAA BB0717 754068 - 754550 + | hypothetical protein BB0718 754550 - 756349 + | penicillin-binding protein (pbp-2) BB0719 756291 - 757670 + | rod shape-determining protein (mreB-2) TERM 737 757708 - 757718 + F 76 -2.6 -5.82281 | TTTCTTATCTCTATT TTTT TAG AAAA TTTTTTTGTATATTT TERM 738 758527 - 758501 - g 73 -8.1 -3.41292 | opp_overlap 758520, overlap 758499 AGCTTTAATAGAAGA TTTTTGGAGAG AAGAG CACTCCAAAAA TGGGTATGATATTCT TERM 739 759248 - 759262 + G 77 -6.4 -4.64383 | TGGAATTCTTGTAGA GCACTA TGG TGGTGC TTTTCCTTTATGGTT BB0720 757836 - 759581 + | threonyl-tRNA synthetase (thrZ) BB0721 759586 - 760215 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 740 760710 - 760695 - g 74 -6.2 -4.44915 | opp_overlap 760695 TAAGGATTTATAAAA GCAATA TTTA TATTGC TTATCAGCTAGAAAA TERM 741 761608 - 761623 + G 79 -4.8 -5.41359 | CTCTACTTTAAGCTC TAATTC CAAT GAATTA TTTTTTACTTTGATT BB0722 760202 - 761647 + | hypothetical protein BB0723 762154 - 761621 - | hypothetical protein TERM 742 761823 - 761838 + g 87 -2.6 -6.18768 | overlap 761820 ACATTTAAATTGTTA GTTTGA TAAA TTAAAC TTTTTTTTATCTTTT TERM 743 762946 - 762964 + G 85 -3.2 -6.06723 | AAGCTTCTTTTTAAT TATAATTG GTG CAATTTTA TTTTTTTTTACAGAG BB0724 762242 - 763573 + | K+ transport protein (ntpJ) BB0725 763570 - 764361 + | hypothetical protein BB0726 764371 - 765342 + | ATP-binding protein (ylxH-3) TERM 744 765451 - 765438 - g 70 -5.3 -4.46267 | opp_overlap 765438 AGAATGCAAGCAAAA CAATC CTTT GATTG ATTTTTATGCTAGTG BB0727 765370 - 766716 + | diphosphate--fructose-6-phosphate 1-phosphotransferase TERM 745 766710 - 766729 + T 73 -6.6 -4.32857 | opp_overlap 766710 766713 ACCAATTAGCATGAA GAATTAAA TTAA TTTAATTC TTTCTATTTGGCAGC BB0728 768067 - 766733 - | coenzyme A disulfide reductase TERM 746 766977 - 767001 + g 83 -6.6 -5.00136 | overlap 766978 GGATAATAATTTGTA TGATTTTTGT CCTTT ACAAAAATCG TTTTATATTTTATTT TERM 747 766978 - 767000 + g 71 -7.9 -3.56421 | overlap 766977 GATAATAATTTGTAT GATTTTTGT CCTTT ACAAAAATC GTTTTATATTTTATT TERM 748 767797 - 767807 + g 71 -4 -5.13473 | TTTGATTTTTTATTA CAAT TGT ATTG TTTTTTGCATCTACT BB0729 769470 - 768079 - | glutamate transporter (gltP) TERM 749 769102 - 769089 - G 74 -6.7 -4.26079 | CTAAAGCAGTGAAAA TGCCA ATTA TGGCA GCAATACCTGCTGTA TERM 750 769407 - 769424 + g 72 -7.1 -3.89291 | opp_overlap 769400 769405 769404 769407, overlap 769411 TACAAAGATAAACTA TGCTTAT TAGA ATAAGCA TTATTATAATATTGA TERM 751 769545 - 769563 + r 72 -4 -5.44119 | AATTAATTAATCTTG TTTTAAAA TTT TTTTAGAA TTTTTTTAGAATAAG pgi 771145 - 769547 - | glucose-6-phosphate isomerase BB0731 771563 - 771162 - | hypothetical protein BB0732 774368 - 771570 - | penicillin-binding protein (pbp-3) TERM 752 772172 - 772184 + g 74 -4.9 -5.10497 | overlap 772173 772175 TAATTATTCCTGCAG GTTTT ACA AAAAC TTTTTTGGGTAAGTT TERM 753 774419 - 774471 + H 74 -8.2 -3.31601 | gap 1, opp_overlap 774452 774453, overlap 774418 774432 TTAATAATGTTATGG GTTGATTGTTATAGTGTAAAATTAT TGTT ATAATTTTACACTATG-TAAACAGC ATTTTGTAAGTTTTG TERM 754 774432 - 774459 + H 88 -11.6 -2.87463 | opp_overlap 774452 774453, overlap 774419 774418 GGGTTGATTGTTATA GTGTAAAATTAT TGTT ATAATTTTACAC TATGTAAACAGCATT BB0733 774632 - 775462 + | hypothetical protein BB0734 776679 - 775666 - | hypothetical protein BB0735 776746 - 777573 + | rare lipoprotein A (rlpA) TERM 755 777571 - 777585 + F 73 -2.2 -5.80364 | AGCCTTATTATGGAT TGATTT TTT AAATTA TTTTTTTATTAAAAT BB0736 777625 - 777768 + | hypothetical protein BB0737 777747 - 778754 + | histidine phosphokinase/phophatase, putative TERM 756 779515 - 779472 - g 71 -8.4 -2.78912 | overlap 779471 GATGAGAGATATAAG TCTTTAGTTGGCAAAGAAGT TACA ATTCCTTTGACAACTAAAAA GATAAAAGTTATTGC valS 778758 - 781385 + | valyl-tRNA synthetase TERM 757 781462 - 781478 + T 83 -9.5 -3.53444 | opp_overlap 781462, overlap 781446 781458 GCTTTTTATTAGAAA TAGCACA TTT TGTGCTA TTAATTGTTAAGAAG TERM 758 781478 - 781462 - T 86 -9.5 -3.96148 | opp_overlap 781446 781462 781458 GCTTTTTATTAGAAA TAGCACA TTT TGTGCTA TTAATTGTTAAGAAG BB0739 782073 - 781486 - | hypothetical protein TERM 759 782138 - 782155 + r 78 -4.3 -5.51165 | overlap 782122 TTTTAACGACTTATG TTAAAAA TAAA TTTTTAA TTTTTTTGAGCTTTT BB0740 782829 - 782152 - | hypothetical protein TERM 760 782842 - 782873 + r 100 -14 -5.04222 | CATTTAATTTTATTT TTTCAAGCTTACAG AATT TTGTAAGCTTGAAA TTTTTAATTTGATTG TERM 761 782972 - 782953 - R 75 -6.5 -4.43037 | opp_overlap 782953 782955, overlap 782948 TTAATAAAAATTAAA GCTAAGT AGCTAA ACTTAGC TTTTTACTCTTCTAT TERM 762 782953 - 782972 + r 80 -6.5 -4.9181 | opp_overlap 782953 782948, overlap 782955 TTAATAAAAATTAAA GCTAAGT AGCTAA ACTTAGC TTTTTACTCTTCTAT groES 783257 - 782976 - | co-chaperonin GroES TERM 763 783042 - 783059 + g 70 -4.9 -4.72272 | gap 1, overlap 783046 TTTATTCTCGATTTT TACAGCAG CTC CTGC-GTA TTTTTCATAAAGCAC TERM 764 783322 - 783348 + H 74 -8.2 -3.32865 | overlap 783321 783318 783323 783344 ATATATTTATATGGT GCTTGAAAATTA AAT TAATTTTCAAGA TAATTTTGTTATTAG TERM 765 783323 - 783347 + H 86 -11.7 -2.58634 | overlap 783322 783321 783318 783344 TATATTTATATGGTG CTTGAAAATTA AAT TAATTTTCAAG ATAATTTTGTTATTA BB0742 783324 - 785021 + | ABC transporter, ATP-binding protein BB0743 785057 - 786754 + | hypothetical protein TERM 766 786875 - 786885 + G 91 -4 -6.04419 | ATGAAAAAAATGTTA CTAA TCT TTAG TTTTTTTCTTATTTT BB0744 786860 - 788962 + | antigen, p83/100 TERM 767 789031 - 789010 - f 100 -10.3 -5.59502 | opp_overlap 789010 TAAAAAACCAAAAAA GCTAAAAAC AAAA GTTTTTAGC TTTTTTAATATTTTT TERM 768 789010 - 789031 + F 100 -10.3 -5.38348 | opp_overlap 789010 TAAAAAACCAAAAAA GCTAAAAAC AAAA GTTTTTAGC TTTTTTAATATTTTT TERM 769 789298 - 789313 + G 79 -3.4 -5.71983 | ATTTTTGTTTTGTGT TTATAA TGTT TTATAA TTTTTTTATGATTAA TERM 770 789493 - 789464 - g 73 -8.1 -3.3761 | gap 1, opp_overlap 789451 789464, overlap 789463 TTTGGTGAATAAAAT TTCTCCATACCTTT TTG AAAGGTACG-AGAA TTTTGAAAGTTTATC BB0745 789270 - 789938 + | endonuclease III (nth) BB0746 790807 - 789947 - | oligopeptide ABC transporter, permease protein (oppC-2) TERM 771 790133 - 790157 + g 71 -8.7 -2.82471 | opp_overlap 790134, overlap 790120 790132 TTGTTTTTGTAAAAA ACTTACTACTT CAA AAGTAGTAAGA CTTCTTCCCATTTGT TERM 772 790156 - 790134 - G 100 -12.2 -5.00616 | opp_overlap 790133 790132 TGTTTTTGTAAAAAA CTTACTACTT CAA AAGTAGTAAG ACTTCTTCCCATTTG TERM 773 790163 - 790179 + g 82 -9.5 -3.39482 | AGTAGTAAGACTTCT TCCCATT TGT AATGGGA TTATAGATGATATTG BB0747 791787 - 790807 - | oligopeptide ABC transporter, permease protein (oppB-2) TERM 774 791251 - 791267 + g 73 -8.1 -3.37761 | opp_overlap 791249 791251 GTAATATATTAAAGA CAGTATT AAA AATACTG TTAAGTTTCTTGGCA TERM 775 791267 - 791251 - G 74 -8.1 -3.55205 | opp_overlap 791251, overlap 791249 GTAATATATTAAAGA CAGTATT AAA AATACTG TTAAGTTTCTTGGCA BB0748 792252 - 791794 - | hypothetical protein TERM 776 792006 - 792021 + g 80 -5.4 -5.23016 | TTACTGTTGAGTTTT TTGGGT AGTA GCCCAA TTTTTTAGCTTCTTT TERM 777 792686 - 792644 - g 100 -17.4 -2.74012 | opp_overlap 792653 792657, overlap 792657 TTATGATTCGAAGGA TTTTGAAAAAAAATCATCCG AGA CGGATGATTCATTTTCAAAA AAAGAAGATAATTTG TERM 778 792673 - 792657 - g 100 -10.9 -5.76949 | opp_overlap 792653 792657, overlap 792644 GATTTTGAAAAAAAA TCATCCG AGA CGGATGA TTCATTTTCAAAAAA TERM 779 792657 - 792673 + G 90 -10.9 -3.66908 | opp_overlap 792657 792644, overlap 792653 GATTTTGAAAAAAAA TCATCCG AGA CGGATGA TTCATTTTCAAAAAA BB0749 792333 - 793625 + | hypothetical protein TERM 780 793767 - 793740 - g 93 -10.8 -3.87551 | opp_overlap 793738 793740, overlap 793743 ATCAGTAAAGCCAAA CAACATCTTATC TTTT GATAAAATGTTG TCTTTGTCATGGTAT TERM 781 793740 - 793767 + G 76 -8.6 -3.59266 | opp_overlap 793740 793743, overlap 793738 ATCAGTAAAGCCAAA CAACATCTTATC TTTT GATAAAATGTTG TCTTTGTCATGGTAT TERM 782 793764 - 793743 - g 70 -6.7 -4.05629 | opp_overlap 793740 793738, overlap 793740 AGTAAAGCCAAACAA CATCTTATC TTTT GATAAAATG TTGTCTTTGTCATGG BB0750 793693 - 793836 + | hypothetical protein BB0751 794915 - 793842 - | hypothetical protein TERM 783 794799 - 794809 + gT 78 -2.6 -5.84011 | AGATGTTAACACTAC TATT ATC AATA TTTTTATTTTTTCTT BB0752 796383 - 794875 - | hypothetical protein TERM 784 795139 - 795155 + gr 70 -5.9 -4.31329 | GCTAAATATCATGCT TGATCCT GTT AGGATTA TTTTAGAATTTTTGG TERM 785 795325 - 795358 + gr 74 -6.3 -4.46105 | gap 1, opp_overlap 795331 795333 795336, overlap 795331 795333 TGATTGTTTGGAACT TGCAAATAGAGGTAAA AAT TTTACTTCTGTTT-CA TCTTTTTTTATAAGT TERM 786 795331 - 795353 + gr 73 -6.4 -4.22283 | opp_overlap 795331 795333 795336, overlap 795325 795333 TTTGGAACTTGCAAA TAGAGGTAAA AAT TTTACTTCTG TTTCATCTTTTTTTA BB0753 797122 - 796388 - | membrane spanning protein, putative BB0754 798048 - 797119 - | ABC transporter, ATP-binding protein BB0755 799016 - 798057 - | ribonuclease Z TERM 787 798571 - 798584 + g 70 -5.3 -4.6038 | opp_overlap 798571 798569 798565 798564 AATAAATATCCAACA CATTC TATT GAATG TTTTAGTTTAGTGTA BB0756 800275 - 799208 - | hypothetical protein TERM 788 800962 - 800948 - gH 80 -5.8 -5.03747 | AAACGGGTCAAAAAA TTTCTA AAA TAGAAA AGGATACTGATAGAG clpP 800452 - 801072 + | ATP-dependent Clp protease proteolytic subunit TERM 789 801657 - 801672 + GT 71 -2.6 -5.52986 | opp_overlap 801646 CAAATAAAATTGATT TTAGAG TTTT TTCTAA TTTTTTTGCTAGGGT BB0758 800996 - 801778 + | hypothetical protein BB0759 802798 - 801941 - | hypothetical protein TERM 790 802168 - 802182 + g 70 -8.6 -2.56271 | opp_overlap 802156, overlap 802167 802165 TAATTATTCCCATTG TTGCAG CAG CTGCAA ATATTGTAATAAGAA BB0760 803212 - 802838 - | hypothetical protein BB0761 803278 - 804165 + | hypothetical protein BB0762 804353 - 804240 - | hypothetical protein BB0763 805778 - 804417 - | response regulatory protein (rrp-2) TERM 791 805228 - 805217 - G 71 -4.4 -4.93696 | opp_overlap 805217 805214 TTGAAAGATCAAAAA TAGC ATCT GCTA TTATTTCTTTACCAA BB0764 806923 - 805775 - | sensory transduction histidine kinase, putative TERM 792 806143 - 806172 + g 73 -8.1 -3.44227 | opp_overlap 806143, overlap 806142 806137 806134 TTTCATCAATGAGAA TATTGCTTATTTT GTTT AAATTAAGCAATA GTTTTATGTGTTTAT TERM 793 806172 - 806143 - G 74 -8.1 -3.54029 | opp_overlap 806142 806137 806134 806143 TTTCATCAATGAGAA TATTGCTTATTTT GTTT AAATTAAGCAATA GTTTTATGTGTTTAT TERM 794 806482 - 806469 - G 80 -8.1 -4.08216 | GCATGCCTTGTAAAA GAGGC CAAA GCCTC AACTCTTCTAAATAG TERM 795 806890 - 806902 + g 82 -6.3 -5.01732 | overlap 806886 TAGATAATTTGTTTA GCTTT GTT AAAGC TTTTTTGAAAAAATT BB0765 807966 - 806920 - | hypothetical protein TERM 796 807022 - 807041 + g 84 -6.6 -5.18371 | ATGCTCTGTGTACTT TAGATATT GATT AATATCTA TTTTGTTTTCTAAAA BB0766 808464 - 807976 - | colicin V production protein, putative BB0767 809552 - 808461 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) TERM 797 808744 - 808721 - G 82 -8.2 -4.47271 | opp_overlap 808720 808721 TAAATGGAATCAAAA TTGCACATGC ACCA GCATTTGCAA ATTCCTTTATTGCTC TERM 798 809409 - 809421 + g 77 -2 -5.83822 | TTCTTTTATTAGTTT TTCT TCTAT AGAA TTTTTTTTACCTATC TERM 799 809704 - 809679 - R 77 -6.4 -4.67234 | opp_overlap 809665 809678, overlap 809665 ATTCAATCTTAAAAA TTGAATTTAA TGGAAT TTAAATTCAA AATGTATTTTTTAAG BB0768 810495 - 809701 - | pyridoxal kinase (pdxK) BB0769 811510 - 810470 - | O-sialoglycoprotein endopeptidase BB0770 812388 - 811507 - | hypothetical protein BB0771 813239 - 812439 - | RNA polymerase sigma factor (rpoS) TERM 800 813600 - 813611 + r 76 -4.4 -5.40474 | TCTAAAGAAGCTTTT CGAA GATC TTCG TTTTTTTGAAAGGAT flgI 814697 - 813690 - | flagellar basal body P-ring protein BB0773 815302 - 814868 - | hypothetical protein TERM 801 815064 - 815103 + g 93 -10.2 -4.51196 | opp_overlap 815057, overlap 815052 815068 TTTGCAAATACAATT GGCTCGATTACATCAATG TACA TATTGATGTAATTGTGTC TTTTGTAGCTTTCAA TERM 802 815068 - 815099 + g 88 -10.4 -3.49789 | opp_overlap 815057, overlap 815064 CAAATACAATTGGCT CGATTACATCAATG TACA TATTGATGTAATTG TGTCTTTTGTAGCTT flgG 816299 - 815502 - | flagellar basal body rod protein FlgG TERM 803 816133 - 816146 + g 71 -8.1 -3.21474 | overlap 816128 AAAGTATTTTCAGTT GCAGG GGTT CCTGC TCTGTTATGGGTTTG BB0775 817214 - 816312 - | flagellar hook-basal body complex protein (flhO) TERM 804 817019 - 817034 + g 77 -6.2 -4.65895 | TTAGTCTTCTTATTA GCATTT CTGG AAATGC TTTTTGAATAGACAA BB0776 817393 - 817956 + | hypothetical protein BB0777 818018 - 818548 + | adenine phosphoribosyltransferase rplU 818605 - 818916 + | 50S ribosomal protein L21 BB0779 818922 - 819242 + | hypothetical protein rpmA 819242 - 819487 + | 50S ribosomal protein L27 obgE 819542 - 820528 + | GTPase ObgE BB0782 820568 - 821188 + | hypothetical protein TERM 805 821783 - 821801 + GF 71 -2.4 -5.45726 | overlap 821784 TTCAAATTTCAGATT TTGGCATT GAA AATGACAG TTTTTTTAAAATATA BB0783 821185 - 822369 + | hypothetical protein BB0784 822335 - 822694 + | hypothetical protein BB0785 822810 - 823103 + | regulatory protein SpoVG BB0786 823263 - 823811 + | 50S ribosomal protein L25/general stress protein Ctc BB0787 823816 - 824382 + | peptidyl-tRNA hydrolase BB0788 824382 - 825704 + | hypothetical protein BB0789 825701 - 827620 + | cell division protein (ftsH) TERM 806 828524 - 828555 + G 77 -5.4 -5.02074 | gap 1 TAATAAAAATAATGT TGCCATACTAAAA GATGGAG TTTTAGTA-GGCA TTTTTTCAGGAATAG BB0790 827625 - 829112 + | hypothetical protein TERM 807 829116 - 829093 - f 95 -11.2 -3.56821 | opp_overlap 829079 829093 ATGATAGTTTTGAAA GCTATTATTC TTTT GAATAATAGC TTTAATAAGATCCTA TERM 808 829093 - 829116 + F 95 -11.2 -3.75169 | opp_overlap 829093, overlap 829079 ATGATAGTTTTGAAA GCTATTATTC TTTT GAATAATAGC TTTAATAAGATCCTA TERM 809 830256 - 830286 + G 82 -2.8 -6.06723 | GATCTTGTTTTTAAG TTTTCTTTAAATAA GGA TTATATAAATAAAA TTTTTTTTTCCAAAG BB0791 829218 - 830321 + | thymidine kinase (tdk) BB0792 830941 - 830318 - | hypothetical protein BB0793 831728 - 830955 - | thymidylate kinase (tmk) TERM 810 831019 - 831037 + gH 87 -2.5 -6.2845 | TCTTTTATTGAATTG TTGATGT AAATC ACATTAA TTTTTTTTTCTAGTT TERM 811 832946 - 832976 + GH 71 -4.2 -5.02074 | opp_overlap 832945, overlap 832949 TTAGTCTTGGAAATC TTAGTTTTCAAAAT TTA ATTTTAAAAACTTA TTTTTTAAAGGATAA TERM 812 832949 - 832973 + GH 74 -5.9 -4.61482 | opp_overlap 832945, overlap 832946 GTCTTGGAAATCTTA GTTTTCAAAAT TTA ATTTTAAAAAC TTATTTTTTAAAGGA TERM 813 833050 - 833031 - gH 70 -2.2 -5.54907 | TTTAGAAAATAAAAA CTCTCAAA TTTC TTTAAAAG GAGATCTTAATGATG BB0794 831646 - 836043 + | hypothetical protein TERM 814 836954 - 836976 + G 80 -6.4 -4.8269 | AGAATTAAAAAGTTT TATTACCTTT AGC GAAGGTGATA TTTTTAATGATTCTA TERM 815 837179 - 837164 - g 74 -2.6 -5.61881 | gap 1 TTCTAAAAATAAAAA TACA-GC TTC GCATGTA ATACTTAGAGAGATT BB0795 836061 - 838526 + | outer membrane protein BB0796 838523 - 839080 + | hypothetical protein BB0797 839244 - 841832 + | DNA mismatch repair protein BB0798 841834 - 842451 + | competence protein F, putative TERM 816 842508 - 842536 + G 100 -14.9 -4.59773 | opp_overlap 842511 842514 TTTAGTTTATGTATT TAATAAGGTTCTT TAA AAGAACCTTATTA TTTTTAGGAATACAG TERM 817 842533 - 842511 - g 95 -12.2 -3.07935 | opp_overlap 842508, overlap 842514 AGTTTATGTATTTAA TAAGGTTCTT TAA AAGAACCTTA TTATTTTTAGGAATA TERM 818 842530 - 842514 - g 84 -9.5 -3.68569 | opp_overlap 842508, overlap 842511 TTATGTATTTAATAA GGTTCTT TAA AAGAACC TTATTATTTTTAGGA TERM 819 842931 - 842916 - g 72 -4.8 -4.81851 | AGTCAAAGCCAAAAA GTTTTA TTTT TAAAAC AGATAGCAAAGAAGT BB0799 842501 - 842989 + | hypothetical protein nusA 843003 - 844451 + | transcription elongation factor NusA TERM 820 846625 - 846650 + G 70 -6.9 -4.01101 | opp_overlap 846625 846627 AACCGAAACAGATAT TAGCTTTGCTT CAGC AAGCGATGCTA TTGTTATTGGATTTC TERM 821 846953 - 846978 + G 88 -10.7 -3.03159 | opp_overlap 846952 846951 CATTCCGGCAAAATT TCATCTTTAAA GCGA TTTAAAGATGA TGTTAAAGAAGTTGC infB 844454 - 847102 + | translation initiation factor IF-2 BB0802 847105 - 847488 + | ribosome-binding factor A (rbfA) BB0803 847491 - 848339 + | tRNA pseudouridine 55 synthase (truB) rpsO 848538 - 848804 + | 30S ribosomal protein S15 TERM 822 849210 - 849224 + G 79 -3.5 -5.626 | overlap 849208 TTGTTGGAATGAATG CTGCT TTTAC GGCAG TTTTTTTGTCAGATA BB0805 848819 - 850987 + | polynucleotide phosphorylase/polyadenylase BB0806 850994 - 852514 + | hypothetical protein TERM 823 853000 - 853015 + GF 71 -2.6 -5.52384 | AGAAATCGGAAAATG GTTATA AAAA TGTAAC TTTTTTTGATAACAC BB0807 852489 - 853778 + | hypothetical protein TERM 824 854801 - 854811 + G 91 -4 -6.02919 | ACAACTATATTTTTT TTGA TTA TCAA TTTTTTTGTTTATAG BB0808 853775 - 854842 + | hypothetical protein TERM 825 855638 - 855595 - gf 79 -4.8 -5.52079 | gap 1, opp_overlap 855600 855632 855635, overlap 855599 855600 ATACCAAAAGAAAAA CCAAGGTATGTAATGGGTATT GGC ACTCCCCATTACATAC-TTAA TGCCATATATTATGG TERM 826 855635 - 855599 - gf 79 -8.1 -4.02606 | opp_overlap 855600 855632, overlap 855595 855600 CAAAAGAAAAACCAA GGTATGTAATGGGTATT GGC ACTCCCCATTACATACT TAATGCCATATATTA TERM 827 855600 - 855634 + GF 93 -11.6 -3.18507 | opp_overlap 855600 855599 855595, overlap 855632 AAAAGAAAAACCAAG GTATGTAATGGGTATT GGC ACTCCCCATTACATAC TTAATGCCATATATT TERM 828 855634 - 855600 - gf 91 -11.6 -2.99123 | opp_overlap 855600 855632, overlap 855599 855595 AAAAGAAAAACCAAG GTATGTAATGGGTATT GGC ACTCCCCATTACATAC TTAATGCCATATATT TERM 829 855632 - 855661 + GF 83 -6.7 -4.95957 | gap 1, opp_overlap 855600 855599 855595 855639, overlap 855600 855635 GCACTCCCCATTACA TACTTAATGCCATA TAT TATGGCATTGA-TA TTTTTGATTGCTTTA TERM 830 855635 - 855659 + GF 100 -10.9 -4.07912 | opp_overlap 855595 855639, overlap 855632 CTCCCCATTACATAC TTAATGCCATA TAT TATGGCATTGA TATTTTTGATTGCTT TERM 831 855655 - 855639 - gf 80 -9.5 -3.16971 | opp_overlap 855635 855632 CCATTACATACTTAA TGCCATA TAT TATGGCA TTGATATTTTTGATT BB0809 854869 - 855996 + | tRNA-guanine transglycosylase (tgt) TERM 832 856794 - 856805 + GF 82 -4.4 -5.59879 | TAGTTTATTATCAGC TTCC TGTA GGAA TTTTTTATATTTCTA TERM 833 856835 - 856869 + GF 100 -14.5 -2.64794 | ATTGCAACAGTGATT TTCCCCAAAATGGCA GAGCA TGCTGTTTTGGGGAA TAATATAAAATTAAA BB0810 855971 - 857509 + | virulence factor mviN protein (mviN) (SP:P37169) TERM 834 858712 - 858694 - g 71 -8.2 -3.22562 | opp_overlap 858692, overlap 858692 GAAAATATTAATAGA CCCTCAAA TGT TTTAAGGG GCGTTGCTTCAATGT BB0811 857506 - 858915 + | hypothetical protein BB0812 860111 - 858939 - | pantothenate metabolism flavoprotein (dfp) BB0813 860186 - 860362 + | hypothetical protein TERM 835 860675 - 860663 - g 90 -3.5 -5.95166 | opp_overlap 860663 GCGAATCAAAAAAAA TTAAT GCA ATTAA TATTATTGATTATAT TERM 836 861123 - 861156 + G 77 -6.3 -4.6821 | opp_overlap 861123 TCAGATTATTAATAA TTTTATAGCATTT AAAGATGA GAATGCTATAAAA TTTTCTCTTCCCATT TERM 837 861279 - 861299 + G 82 -5.5 -5.47964 | overlap 861269 AGTTGTTTTAAATGT GGCTTTAAA AGT TTTAAATCC TTTTTCTTGTTTTAT panF 860440 - 861774 + | sodium/panthothenate symporter BB0815 861784 - 862677 + | hypothetical protein TERM 838 862654 - 862670 + F 74 -5.9 -4.57073 | AAGAATGAATTTTGC TCTAAGC CTA GTTTAGA TTTTTAAAGCAAGTA TERM 839 863329 - 863350 + G 70 -5.1 -4.76423 | overlap 863324 CGATCTGTTGTAAGG CCCCATTTT TATG AAGAAGGGG TTTTATCTATTTCTA BB0816 862696 - 863646 + | hypothetical protein TERM 840 863951 - 863963 + G 73 -7.7 -3.87075 | TTATCTTATCCTGAG GCTCT TGG AGAGC TTTCTAGAAAGTACT TERM 841 864244 - 864258 + G 71 -4.2 -5.08169 | overlap 864246 TTTTAAAAATTATGA GGCTCT TGA AGAGGC TTTTTTACAGTATAT TERM 842 864931 - 864912 - g 74 -2.2 -5.66989 | opp_overlap 864916, overlap 864916 TAAATATTAAAAAAA TAAATAAG AATA CTTATTTT TTTAAGGATGTTAAA TERM 843 864916 - 864927 + G 73 -3 -5.42862 | opp_overlap 864912 864916 TATTAAAAAAATAAA TAAG AATA CTTA TTTTTTTAAGGATGT TERM 844 864927 - 864916 - g 70 -3 -5.23943 | opp_overlap 864916, overlap 864912 TATTAAAAAAATAAA TAAG AATA CTTA TTTTTTTAAGGATGT murC 863636 - 865042 + | UDP-N-acetylmuramate--L-alanine ligase BB0818 865053 - 865919 + | hypothetical protein BB0819 865916 - 866458 + | cytidylate kinase BB0820 866494 - 866694 + | hypothetical protein TERM 845 867538 - 867552 + G 76 -8.6 -3.67989 | TGATGTTTTATGGCT TCATCC AGA GGATGA TTTAGATAACATTTT BB0821 866681 - 867601 + | 2-methylthio-N6-isopentyladenosine tRNA modification enzyme (miaA) TERM 846 867661 - 867639 - g 82 -2.7 -6.07969 | overlap 867630 GAAAATTAAAAAAAA TTTCTACCC ATAAA AGGAAGAAA AAAAGAAGAAAAAAT BB0822 867605 - 867700 + | hypothetical protein BB0823 868114 - 867743 - | hypothetical protein TERM 847 868151 - 868168 + H 78 -5.7 -5.16472 | ACTACTTTAGTGTGT TACTATA ATAA TATAGTA TTTTTTAGAATTTTT BB0824 868189 - 868740 + | hypothetical protein BB0825 869515 - 868733 - | hypothetical protein TERM 848 868785 - 868763 - G 75 -7.7 -4.06502 | TATTCCTAAATGAAA TGGGACAGG TCTTT CCTGTCCAA AGATGTTTGCTGTGA BB0826 870023 - 869508 - | hypothetical protein TERM 849 869718 - 869730 + g 100 -6.3 -6.04324 | TATTCTTAATTTTAG CGAAA TGA TTTCG TTTTTTATTTTTTGA BB0827 872583 - 870112 - | ATP-dependent helicase (hrpA) TERM 850 872078 - 872090 + g 72 -3.5 -5.28414 | opp_overlap 872078 GGTGCATTATTAAAA TATTT TGA AAATA TTTTTGTGTTTATTG TERM 851 872502 - 872521 + g 70 -2.9 -5.243 | TACCTGTTGGACTTT CTACAAT TAAAAC ATTGTGG TTTTTTAGTACTTTA BB0828 875132 - 872586 - | DNA topoisomerase I (topA) TERM 852 873150 - 873164 + g 70 -5.7 -4.37991 | opp_overlap 873150 873149 TGTTAAAGGATCAAC CCCAA GTATA TTGGG TTTTAGCTCTTTTTC TERM 853 873625 - 873656 + g 83 -6.7 -4.95854 | gap 1, opp_overlap 873631, overlap 873627 873628 AGTGTTGATATAATT GTA-GAATAGGTCG AGGGA CGACCTATTCCTTC TTTTTCCATTTTTTG TERM 854 873627 - 873653 + g 90 -9.5 -4.51654 | opp_overlap 873631, overlap 873625 873628 TGTTGATATAATTGT AGAATAGGTCG AGGGA CGACCTATTCC TTCTTTTTCCATTTT TERM 855 873628 - 873652 + g 100 -13 -3.28552 | opp_overlap 873631, overlap 873627 873625 GTTGATATAATTGTA GAATAGGTCG AGGGA CGACCTATTC CTTCTTTTTCCATTT TERM 856 873649 - 873631 - G 79 -8.9 -3.39005 | opp_overlap 873628 873627 873625 GATATAATTGTAGAA TAGGTCG AGGGA CGACCTA TTCCTTCTTTTTCCA TERM 857 874307 - 874321 + g 70 -2.9 -5.35222 | overlap 874297 TTTTTTTAGTTTCTA TTGAA ATTAA TTCAA TTTTTTGTCCATTTT TERM 858 875141 - 875175 + H 73 -9 -2.76261 | opp_overlap 875168 875174, overlap 875140 875145 TTTGCATAAATTCCC TATGTTTATATATTGT ATT ATAATATATAAATATA ATTTAAGAATTAAAA TERM 859 875273 - 875259 - g 95 -5.8 -5.79526 | opp_overlap 875259 ACATTGGAAAAAAAA TTGAAA ATT TTTCAA TTCTTAAGGAGCAGA BB0829 875207 - 876448 + | exonuclease SbcD (sbcD) TERM 860 877783 - 877743 - g 93 -11.6 -3.36202 | opp_overlap 877744, overlap 877772 AGAGATAGGCTAGAA TTTTTATTAAAATCTACT GGCAA AGAAGATTTTAATAAAAA TAAGGAAAAAAATAT BB0830 876429 - 879281 + | exonuclease SbcC (sbcC) BB0831 879303 - 880250 + | xylose operon regulatory protein (xylR-2) BB0832 881091 - 880267 - | hypothetical protein ileS 884213 - 881085 - | isoleucyl-tRNA synthetase BB0834 886447 - 884228 - | ATP-dependent Clp protease, subunit C (clpC) TERM 861 885760 - 885771 + g 73 -4.4 -5.09685 | GAATTGTTTTGTCTT GTAG TTTG CTAC TTATTTTTTTTTGCA BB0835 888182 - 886470 - | phosphomannomutase (cpsG) TERM 862 890193 - 890180 - g 93 -5.3 -5.75945 | opp_overlap 890180 ATTGTCTAAAAAAAA GCTTA TTGA TAAGC TTAAATTTGACTTAG BB0836 888297 - 890318 + | excinuclease ABC subunit B TERM 863 890862 - 890842 - gf 74 -4.1 -5.24531 | AGGTTTTAGAAAAAA TATTAAATC AAG GTTTTAATA GAGTTAGGATAAATT BB0837 890322 - 893174 + | excinuclease ABC, subunit A (uvrA) TERM 864 893704 - 893718 + GT 86 -5.8 -5.4505 | TGAATTTCTTGTCGA TTTTGA TTC TCAAAA TTTTTTATTAAAAAA TERM 865 894092 - 894102 + GT 80 -5.4 -5.2696 | opp_overlap 894083, overlap 894083 894080 AATAAATCTTCAAGT GAAG ATT CTTC TTTTTTGGATTTTGA TERM 866 895091 - 895109 + GT 81 -3.2 -5.89827 | overlap 895093 AGGTTTGGCATTAAT CCTTATTT AAG AAATAATG TTTTTTTTGATAATT TERM 867 895137 - 895147 + GT 70 -6.8 -4.00124 | opp_overlap 895137 ATTATGGCATAACAA GTCC AAA GGAC TTTAATTATGAAATA TERM 868 895902 - 895912 + GT 74 -4 -5.35815 | TTAAGCTTAATGTTT TTGA TTT TCAA TTTTTGTTTGCTATG BB0838 893129 - 896569 + | hypothetical protein TERM 869 896588 - 896567 - T 82 -2.5 -6.23317 | gap 1, opp_overlap 896584 AGAAAAACAAAAAAA TAAT-AATGA TTT TCATTTATTA GTAATATTAATTTTT TERM 870 897055 - 897009 - T 100 -14.3 -3.32536 | gap 1, overlap 897012 AAATCAGTTTCATAA TC-ATGGTTTATTTTTATTGTC GTAC AACAATAAAAATAAACCATTGA AATCAGAAATATTGT TERM 871 897051 - 897012 - T 100 -16.2 -2.83271 | overlap 897009 TCAGTTTCATAATCA TGGTTTATTTTTATTGTC GTAC AACAATAAAAATAAACCA TTGAAATCAGAAATA BB0839 897740 - 897096 - | hypothetical protein BB0840 899320 - 897704 - | hypothetical protein TERM 872 897797 - 897814 + gH 75 -3.5 -5.52079 | TGCATCTACTATTTC TTTATTG TAAC CAATGAA TTTTTCTTTTAATGT TERM 873 900244 - 900234 - g 75 -5.4 -4.82901 | opp_overlap 900232 900234 GGGTCTGTAGAAAAA CTAG CTG CTAG TCTTTTTAAAAATAA TERM 874 900452 - 900470 + G 71 -4.6 -4.86731 | AAAAGAAAAAGCCAA GCTTAAAG ATG TTTTGAGC TTTTATTTAGGCAGA BB0841 899499 - 900731 + | arginine deiminase (arcA) BB0842 900796 - 901782 + | ornithine carbamoyltransferase, catabolic (arcB) BB0843 901810 - 903258 + | hypothetical protein TERM 875 903891 - 903872 - T 78 -4.3 -5.4588 | opp_overlap 903872 TAAAATTATAAAAAA GTCTTCC TTTAAC AGAAGAC TTTGATTTTAAGTTA BB0844 904900 - 903929 - | hypothetical protein BB0845 905120 - 905227 + | hypothetical protein TERM 876 905254 - 905267 + TF 78 -5.3 -5.17576 | AAGTCTATAAACATC CTCTT TAAT AAGAG TTTTTTAGCTTACTA BB0846 905865 - 905752 - | hypothetical protein BB0847 905839 - 905946 + | hypothetical protein BB0848 905928 - 906032 + | hypothetical protein BB0849 906162 - 906263 + | hypothetical protein TERM 877 906801 - 906783 - f 73 -3.2 -5.56673 | overlap 906787 ATCTACAAGAAAAAA TTAACTTT ATA AAAGATAA TATAAATATAATTGT TERM 878 907071 - 907087 + F 71 -7.3 -3.96618 | opp_overlap 907086 GAAATTAAATATCTT GGTTGTT TAT AGCAACC TTATTTAAGGTTAAA TERM 879 907400 - 907388 - f 76 -6.3 -4.89521 | opp_overlap 907387 AGACTGCAAAGAAAA TCCTT ATA AAGGA ATTGAATTAAACATG BB0851 907935 - 908081 + | hypothetical protein TERM 880 908091 - 908079 - f 70 -3.5 -5.33405 | opp_overlap 908079, overlap 908084 TTTAGTAAAGAAAAA TAAAA TAA TTTTA TTATAGCTAGTCTTT TERM 881 908094 - 908084 - f 70 -2.6 -5.48028 | opp_overlap 908079, overlap 908079 TAAAGAAAAATAAAA TAAT TTT ATTA TAGCTAGTCTTTTAT TERM 882 908191 - 908173 - f 83 -3.2 -6.04324 | opp_overlap 908173 TTAAAAAACAAAAAA GAGAAAAT CAT ATTTTGTC TTTAATAAAAGGATA BB0852 908407 - 909591 + | hypothetical protein SEQUENCE gi|11496583|ref|NC_001849.1| Borrelia burgdorferi B31 plasmid lp17, complete sequence (length 16823) BBD01 332 - 805 + | hypothetical protein BBD02 873 - 1022 + | hypothetical protein BBD03 1117 - 1221 + | hypothetical protein BBD04 1412 - 1768 + | hypothetical protein TERM 1 1788 - 1828 + F 86 -12.1 -2.56475 | opp_overlap 1790 1817, overlap 1796 TATAATGATATTAAA AAGAGAAACATCTTTAGTA TAT TACTAAAGGTGTTTCTCCC CTTAATCTAAAGTTG TERM 2 1826 - 1790 - f 100 -16.9 -4.84274 | opp_overlap 1788 1796, overlap 1817 TAATGATATTAAAAA GAGAAACATCTTTAGTA TAT TACTAAAGGTGTTTCTC CCCTTAATCTAAAGT TERM 3 1796 - 1820 + F 100 -10.9 -3.93236 | opp_overlap 1790 1817, overlap 1788 TATTAAAAAGAGAAA CATCTTTAGTA TAT TACTAAAGGTG TTTCTCCCCTTAATC TERM 4 2348 - 2334 - f 79 -7.2 -4.57882 | GGCAAGAATAACAAA GCAAAT TTA ATTTGC TAAGAATAAGTTAAT BBD05 2389 - 2544 + | hypothetical protein TERM 5 2853 - 2893 + F 93 -9.9 -4.15657 | opp_overlap 2853 2845 GTATAAATGCGATAA GGGCTTTAAGTAACTTA TCTTCCT TAAGCCACTTAAAGCCC TTTATCTGGTTATCA TERM 6 2893 - 2853 - f 100 -14.3 -3.41126 | opp_overlap 2853, overlap 2845 GTATAAATGCGATAA GGGCTTTAAGTAACTTA TCTTCCT TAAGCCACTTAAAGCCC TTTATCTGGTTATCA BBD06 3143 - 3607 + | hypothetical protein TERM 7 3852 - 3873 + T 76 -8.1 -3.72453 | opp_overlap 3851 3852 TGTTATAATACAAAG CCTGTCTTT AATA AAAGATAGG TTTAACATTCTTACT TERM 8 4037 - 4071 + T 77 -8.9 -3.43674 | opp_overlap 4036 4034 4042, overlap 4034 4034 4042 CTAAAAGAAGTATAT TTAAAGGTAATTAAT TTTAC ATTAATTCCCTTTAA TAATTTTATTTTTAA TERM 9 4126 - 4116 - T 73 -5.4 -4.88326 | opp_overlap 4116 AAACAAAAATTAAAA TTGC ATA GCAA ATTCTTTATGTAAAA TERM 10 4289 - 4272 - T 83 -6.3 -5.42605 | opp_overlap 4272 TTAATAAAAAGAAAA CCCCTTA AAGA TAAGAGG TTTATTTAAAAGAAT BBD07 4373 - 4257 - | hypothetical protein TERM 11 4395 - 4367 - G 93 -11.3 -3.22841 | opp_overlap 4362 4360 4369, overlap 4357 4362 4360 AAGGAGAATATTTAA TACTCAATTATTA GTT CAATAATTGAGTA TTACCATGTATTTTT TERM 12 4369 - 4393 + g 73 -8.8 -3.1005 | opp_overlap 4357 4367 4362 4360, overlap 4362 4360 GGAGAATATTTAATA CTCAATTATT AGTTC AATAATTGAG TATTACCATGTATTT BBD08 4707 - 4805 + | hypothetical protein BBD09 5058 - 5741 + | hypothetical protein BBD10 6454 - 5876 - | hypothetical protein TERM 13 6639 - 6621 - H 81 -9 -3.85724 | AAAAACCAATTTAAA GATTAGAT TAT ATCTAATC CCAATTTATATAAAT BBD11 6681 - 7634 + | hypothetical protein BBD12 7752 - 7621 - | hypothetical protein TERM 14 8032 - 8016 - g 74 -6.7 -4.35958 | overlap 8013 GCATGAAAGAAACAA TTCAATT AAG AATTGAA CAAGCAAAAAAAATA BBD13 7787 - 8113 + | hypothetical protein TERM 15 8256 - 8222 - f 70 -5.1 -4.8384 | CAAATAATTGAAAAA GCTTCTGAAACCACA ACAAA TTTAACTTCAGAAGC CAGGATAAGATAATG TERM 16 9025 - 9011 - g 75 -3.6 -5.38549 | overlap 9013 TGCAAATAACAAAAA TACTTA AAA TAAGCA ACAATGAAAAAACCT BBD14 8269 - 9381 + | hypothetical protein BBD15 10015 - 9593 - | hypothetical protein BBD16 10520 - 10425 - | hypothetical protein TERM 17 10633 - 10655 + G 73 -8.6 -3.00153 | overlap 10637 10649 TTAGAAAGCTGCCAT GAAATAAATC GAG GATTTGTTTC TATAATCTTTGATTT BBD17 10591 - 10686 + | hypothetical protein BBD18 11648 - 10986 - | hypothetical protein TERM 18 11085 - 11098 + g 70 -6.7 -3.94402 | TTCAATTTTATTGAT GGCTT GTAA AAGCC TTATTTGGCCGTTAT TERM 19 11681 - 11665 - H 71 -5.3 -4.58395 | opp_overlap 11679 11680 TTTATCCTTTAAAAA TATATTA ATA TAATATA ATACTATGTATTAAT TERM 20 11725 - 11683 - H 100 -21.2 -3.84523 | opp_overlap 11680 11679 11688 11696 ATTAATATAATATAA TACTATGTATTAATTGATAT TAT ATATCAATTAATACATAGTA TAAATAAAAAAAATA TERM 21 11688 - 11720 + H 100 -15.3 -2.64616 | opp_overlap 11683, overlap 11680 11679 11696 TATAATATAATACTA TGTATTAATTGATAT TAT ATATCAATTAATACA TAGTATAAATAAAAA TERM 22 11813 - 11839 + H 75 -5.3 -4.94992 | gap 1, opp_overlap 11813 AACCATTTATAAAAA GTCCTTAAGAGA GAAA TTTCTTA-GGAC TTTTTATAAATTTAA TERM 23 12126 - 12106 - g 73 -5.5 -4.63486 | ATTTTTTTAATAAAA GTTCTTTTT TCT ATAAAGAAC ATAAAATAAGTATTA BBD19 12057 - 12170 + | hypothetical protein TERM 24 12219 - 12205 - f 73 -5.8 -4.78981 | opp_overlap 12205 ACCAACCAAAAGAAA TACTTT TTA AAAGTA TTTAGATGTGTAGGA BBD21 13341 - 14081 + | hypothetical protein TERM 25 14124 - 14139 + G 72 -6.2 -4.32034 | TTAAACAAAATGTTA GCAAAT CTAA ATTTGC TTTTCGTGATAATGA BBD22 14072 - 14341 + | hypothetical protein TERM 26 14385 - 14420 + T 82 -10.8 -2.77283 | gap 1, opp_overlap 14384 14385, overlap 14398 AAAATAATAAAGAAT TATCTACCTATGATTTC TGT GAAATT-TAGGTAGATA TGAATTTGTTAGTAA TERM 27 14420 - 14385 - T 72 -8.6 -3.22831 | gap 1, opp_overlap 14385 14398, overlap 14384 AAAATAATAAAGAAT TATCTACCTATGATTTC TGT GAAATT-TAGGTAGATA TGAATTTGTTAGTAA TERM 28 15864 - 15922 + T 100 -13.8 -3.43203 | gap 1, opp_overlap 15875 15878, overlap 15866 15878 CTTGTTGGATACATT TGGC-TTAATTACAATCAATACAATAA GTTAAA TCATTGTATTGATTGTAATTAAAGCTA TTGATATTATAATAA TERM 29 15866 - 15920 + T 100 -14.2 -3.28173 | gap 1, opp_overlap 15875 15878, overlap 15864 15878 TGTTGGATACATTTG GC-TTAATTACAATCAATACAATAA GTTAAA TCATTGTATTGATTGTAATTAAAGC TATTGATATTATAAT TERM 30 15910 - 15875 - T 86 -11.5 -2.71144 | opp_overlap 15866 15864 15878, overlap 15878 CATTTGGCTTAATTA CAATCAATACAATAA GTTAAA TCATTGTATTGATTG TAATTAAAGCTATTG BBD24 16121 - 15891 - | hypothetical protein TERM 31 16060 - 16012 - G 83 -8.6 -4.59954 | opp_overlap 16018, overlap 16018 AATAATAAAAAAATA TCAAAACATTTTTTACAAAATC TGATT AATTTTGTGAAAAATGTTTTTA GTTGCAAGTGAAAAT TERM 32 16018 - 16054 + g 95 -9.1 -4.86621 | opp_overlap 16012 16018 AAAAAAATATCAAAA CATTTTTTACAAAAT CTGATTA ATTTTGTGAAAAATG TTTTTAGTTGCAAGT TERM 33 16054 - 16018 - G 83 -7.6 -4.66395 | opp_overlap 16018, overlap 16012 AAAAAAATATCAAAA CATTTTTTACAAAATC TGATT AATTTTGTGAAAAATG TTTTTAGTTGCAAGT TERM 34 16259 - 16269 + G 76 -4 -5.41746 | TTTTAAATGCCTTTT TAAC TAT GTTA TTTTTTTGAAAAATT BBD25 16212 - 16370 + | hypothetical protein SEQUENCE gi|11496607|ref|NC_001850.1| Borrelia burgdorferi B31 plasmid lp25, complete sequence (length 24177) BBE01 255 - 154 - | hypothetical protein TERM 1 284 - 296 + r 73 -3.5 -5.58051 | TTTTTCTACCTCATT TTTTA GTT TAAAA TTTTATTTTTTATTT BBE02 4156 - 323 - | hypothetical protein TERM 2 2308 - 2323 + g 76 -6.8 -4.61147 | CTTTGGTATATCCTA GCAGGG CATT TCCTGC TTTTATATGATGTTC TERM 3 3216 - 3204 - G 95 -4.9 -5.9873 | opp_overlap 3215 TCATCATAAAAAAAA TATCT AAA AGATA TAGAAGATCTGTATA TERM 4 3311 - 3293 - G 76 -4 -5.49234 | overlap 3286 ATATGCAATAAAAAA TATTCTTA AAA TAAAAATA ATTGATTCTTCAAGA TERM 5 3440 - 3450 + g 80 -5.4 -5.20154 | TCTCTCATAAAGTAT CTCT TTT AGAG TTTTTTGAATTATCT TERM 6 3590 - 3610 + g 74 -8.5 -3.20929 | ATATTCTTCTTTTTC TTCAATTTT AGM AAAATTGAA TTCAATATATCTTTT TERM 7 4262 - 4239 - R 100 -8.4 -5.45726 | opp_overlap 4239 TATATTTTAAAAAAA TTAAGTTTTT AATT AAAAACTTAA TTTTTAGATAAATAG TERM 8 4239 - 4262 + r 85 -8.4 -4.67353 | opp_overlap 4239 TATATTTTAAAAAAA TTAAGTTTTT AATT AAAAACTTAA TTTTTAGATAAATAG BBE03 4613 - 4419 - | hypothetical protein BBE04 4719 - 4859 + | hypothetical protein TERM 9 5336 - 5291 - f 100 -7.9 -5.98675 | opp_overlap 5299, overlap 5292 TATAAAAATAAAAAA TGATTTAAGGAACTATAAA GTTTATCT TTTAAAGTTCCTTAAATCC ACAAAAGCTTTGCTA TERM 10 5335 - 5292 - f 100 -11.4 -4.15545 | opp_overlap 5299, overlap 5291 ATAAAAATAAAAAAT GATTTAAGGAACTATAAA GTTTATCT TTTAAAGTTCCTTAAATC CACAAAAGCTTTGCT BBE05 5377 - 5529 + | hypothetical protein TERM 11 5548 - 5532 - f 73 -8.7 -2.82595 | overlap 5531 TCTAATTAGGTAAAG GGGCTTC AAG AAAGCCC GGGCGCATTAATTCA BBE06 5757 - 5906 + | hypothetical protein BBE07 6355 - 6182 - | hypothetical protein BBE08 6701 - 6555 - | hypothetical protein TERM 12 6913 - 6927 + G 73 -4.4 -5.03994 | opp_overlap 6913, overlap 6921 ATGCAAAAAGACATA TATATT TCG AATATA TTTTTATATATACCA BBE09 6898 - 7761 + | protein p23 BBE10 7972 - 7874 - | hypothetical protein TERM 13 8047 - 8001 - R 100 -12.9 -3.99228 | opp_overlap 8006, overlap 8006 TAATTCAAAATATAA TAAAACTATTAATTTTAATTT TTCAT AAATTAAAATTAATAGTTTTT GGTTTTAATATTATT TERM 14 8042 - 8006 - R 100 -12.8 -4.98917 | opp_overlap 8006, overlap 8001 CAAAATATAATAAAA CTATTAATTTTAATTT TTCAT AAATTAAAATTAATAG TTTTTGGTTTTAATA TERM 15 8006 - 8042 + r 100 -12.8 -5.1166 | opp_overlap 8001 8006 CAAAATATAATAAAA CTATTAATTTTAATTT TTCAT AAATTAAAATTAATAG TTTTTGGTTTTAATA BBE11 8446 - 8312 - | hypothetical protein BBE12 8646 - 8521 - | hypothetical protein TERM 16 8705 - 8685 - H 71 -5.6 -4.67353 | opp_overlap 8684 8698, overlap 8698 TTATTTATGTAAAAA TTATACTA AATGA TAGTATAA CTACTCTTAATTAGC BBE13 8863 - 8958 + | hypothetical protein BBE14 9163 - 9378 + | hypothetical protein BBE15 9490 - 9353 - | hypothetical protein TERM 17 9492 - 9512 + r 83 -11.3 -2.74192 | opp_overlap 9490, overlap 9481 AGCCCAGATATCATT TGCTTTTCA CAC TGAAAAGCA TCCTCTTGAACACTA TERM 18 9551 - 9531 - R 75 -8.5 -3.52073 | opp_overlap 9531 9530 TCTTGAACACTAGAA TTAAAAACA CAC TGTTTTTAA AATTTTCAATTTAAA BBE16 10187 - 9567 - | hypothetical protein TERM 19 9729 - 9751 + g 78 -9.4 -3.05844 | opp_overlap 9727 9726 9733, overlap 9733 TACAAAAGGAAATTC TAAATGAAAA AAC TTTTCATTTA TATTCGGATCACCAA TERM 20 10088 - 10110 + g 79 -5 -5.48028 | opp_overlap 10092 CATCAAACTTTTCAA CAATTTTATT ATA AATAACATTG TTTTCTTTTTGTTTG BBE17 10709 - 10200 - | hypothetical protein TERM 21 10910 - 10898 - R 74 -6.3 -4.6575 | opp_overlap 10898 ATATAAATCACAAAA GCTTT TTA AAAGC TATCTAAATTCTTTA TERM 22 11047 - 11079 + r 100 -13.9 -3.88985 | opp_overlap 11043, overlap 11034 11034 11050 GATAAAAATACTTTT TAAGTTTTTTATATT CAA AATATAAAAAACTTA TTTATAAAAGATTTT TERM 23 11050 - 11076 + r 100 -11.2 -4.06687 | opp_overlap 11043, overlap 11034 11047 AAAAATACTTTTTAA GTTTTTTATATT CAA AATATAAAAAAC TTATTTATAAAAGAT TERM 24 11194 - 11143 - R 72 -8.4 -3.14587 | gap 1, overlap 11141 11160 11179 TGGTATAAAATCACA TAGGGCCTAACCATAAATACTCTTA AAG CAAGAATACTTATC-TTAAGCCCTA TAAATAGACATCGAC BBE18 12079 - 11498 - | hypothetical protein BBE19 12854 - 12096 - | hypothetical protein BBE20 13393 - 12830 - | hypothetical protein BBE21 14530 - 13403 - | hypothetical protein TERM 25 13845 - 13855 + g 71 -4 -5.1285 | TTTTGCAGTGTTTTT TGTA AAT TACA TTTGTTTTCTTTTTT TERM 26 14976 - 14992 + r 82 -8.1 -4.50058 | opp_overlap 14976, overlap 14971 ATATAGTCTAAAAAA CTATCAT TCC ATGATAG TTTTAATTATAAATA TERM 27 14992 - 14976 - R 91 -8.1 -5.08169 | opp_overlap 14976 14971 ATATAGTCTAAAAAA CTATCAT TCC ATGATAG TTTTAATTATAAATA BBE22 15578 - 15042 - | pyrazinamidase/nicotinamidase (pncA) TERM 28 15666 - 15655 - H 73 -4.4 -5.27023 | opp_overlap 15656 15657, overlap 15656 15657 ATTTTAAAAATAAAA TCCT CCTT AGGA GATATTTAATAACAG BBE23 15973 - 16158 + | hypothetical protein TERM 29 16426 - 16411 - Tf 88 -4.8 -5.92337 | opp_overlap 16411, overlap 16425 AGATAGTAAAAAAAA TATATG TATA CATATA TTTTAAATAAAAGTG TERM 30 18161 - 18145 - Tf 80 -3.1 -5.93809 | TGTTTAGAAAAAAAA TCATTAA ATT TTAATAA TCATATAAGTAAATT BBE25 18606 - 18502 - | hypothetical protein TERM 31 18546 - 18590 + gF 78 -4.5 -5.38549 | opp_overlap 18552 18553, overlap 18548 18551 18553 CAAAATTTATGTTGC AAAAAATTATTCCAACTTTAT TAA ATAAAGTTGGAATATCTTGTA TTTTTATTGTTTGCA TERM 32 18548 - 18588 + gF 76 -7.1 -4.30912 | opp_overlap 18552 18553, overlap 18546 18551 18553 AAATTTATGTTGCAA AAAATTATTCCAACTTTAT TAA ATAAAGTTGGAATATCTTG TATTTTTATTGTTTG TERM 33 18551 - 18585 + gF 84 -8.8 -4.20092 | opp_overlap 18552 18553, overlap 18548 18546 18553 TTTATGTTGCAAAAA ATTATTCCAACTTTAT TAA ATAAAGTTGGAATATC TTGTATTTTTATTGT TERM 34 18584 - 18552 - Gf 100 -12.3 -5.02074 | opp_overlap 18551 18548 18546 18553, overlap 18553 TTATGTTGCAAAAAA TTATTCCAACTTTAT TAA ATAAAGTTGGAATAT CTTGTATTTTTATTG TERM 35 18553 - 18583 + gF 100 -15.8 -3.66213 | opp_overlap 18552 18553, overlap 18551 18548 18546 TATGTTGCAAAAAAT TATTCCAACTTTAT TAA ATAAAGTTGGAATA TCTTGTATTTTTATT TERM 36 18583 - 18553 - Gf 100 -15.8 -3.60762 | opp_overlap 18553 18551 18548 18546, overlap 18552 TATGTTGCAAAAAAT TATTCCAACTTTAT TAA ATAAAGTTGGAATA TCTTGTATTTTTATT BBE26 18586 - 18714 + | hypothetical protein BBE27 19055 - 19198 + | hypothetical protein BBE28 19489 - 19337 - | hypothetical protein TERM 37 20941 - 20931 - H 71 -5.4 -4.61566 | opp_overlap 20931 GTTCAAACCAGAAAA GCTA AAA TAGC TAATTGACTATACAA TERM 38 21086 - 21057 - H 82 -11.1 -2.52896 | opp_overlap 21047 21046 21064, overlap 21062 21064 GTATTTTGGAAGTTA TTATAGATTTAAA AATT TTTAAATCTATAA ATATCGATCCAAGTT TERM 39 21409 - 21397 - H 70 -6.3 -4.30559 | opp_overlap 21396 21392, overlap 21379 AAGAAAATTTTAAAA TTCCT TTT AGGAA ATTTATTAATACAAA BBE30 21558 - 21704 + | hypothetical protein TERM 40 21836 - 21881 + T 100 -15.9 -3.05521 | gap 1, opp_overlap 21830 21844 21871, overlap 21841 TTTATTAAATTTCCW GYGAACTACTATTTCTATAATC TTT GATT-TAGAAATAGTAGTTCAC TATTAAACCTATCCT TERM 41 21841 - 21876 + T 95 -13 -3.18728 | gap 1, opp_overlap 21830 21844 21871, overlap 21836 TAAATTTCCWGYGAA CTACTATTTCTATAATC TTT GATT-TAGAAATAGTAG TTCACTATTAAACCT TERM 42 21873 - 21844 - T 72 -8.9 -2.71011 | gap 1, opp_overlap 21841 21836, overlap 21830 21871 ATTTCCWGYGAACTA CTATTTCTATAATC TTT GATT-TAGAAATAG TAGTTCACTATTAAA TERM 43 21912 - 21889 - T 95 -12.6 -3.79251 | opp_overlap 21889 TAGTTCACTATTAAA CCTATCCTTT AAAA AAAGGATAGG TTTTTACATAATATT TERM 44 21889 - 21912 + T 100 -12.6 -4.70266 | opp_overlap 21889 TAGTTCACTATTAAA CCTATCCTTT AAAA AAAGGATAGG TTTTTACATAATATT BBE31 22677 - 21946 - | antigen, P35, putative SEQUENCE gi|11496637|ref|NC_001851.1| Borrelia burgdorferi B31 plasmid lp28-1, complete sequence (length 26921) TERM 1 644 - 630 - g 70 -5 -4.72631 | ACCAAGCCAATAAAA CTTCTA CCT CAGAAG ACCAAAAGGAATTAG BBF01 467 - 1465 + | erpD protein, putative BBF02 1720 - 2076 + | hypothetical protein BBF03 2619 - 2098 - | hypothetical protein BBF04 2658 - 2807 + | hypothetical protein BBF05 2777 - 3076 + | hypothetical protein BBF06 3201 - 3380 + | hypothetical protein BBF07 3529 - 3410 - | hypothetical protein BBF08 3849 - 3682 - | hypothetical protein BBF09 4027 - 4182 + | hypothetical protein TERM 2 4366 - 4348 - f 72 -3.8 -5.33124 | AAGAAGAAAAGAAAA GCTATTCT AGA AGAGCAGC AAAGACAGAAACAAC BBF10 4488 - 4985 + | hypothetical protein TERM 3 5007 - 5051 + F 95 -11.2 -3.71517 | gap 1, opp_overlap 5018, overlap 5018 CAACAATATCTTCTT ATTTTAAAAAAGCCTAAG-TA CTTA TATCTTAGGCTTTTTTAAAAA TTATCTTGCCTCTTA TERM 4 5040 - 5018 - f 75 -5.7 -5.0538 | gap 1, opp_overlap 5007 5018 TCTTATTTTAAAAAA GCCTAAG-TA CTTA TATCTTAGGC TTTTTTAAAAATTAT TERM 5 5018 - 5040 + F 75 -5.7 -5.06103 | gap 1, opp_overlap 5018, overlap 5007 TCTTATTTTAAAAAA GCCTAAG-TA CTTA TATCTTAGGC TTTTTTAAAAATTAT TERM 6 5415 - 5405 - f 75 -4 -5.60993 | opp_overlap 5399 5397 5405 TTCTGTATAAAAAAA TTCT TTA AGAA TTTTTCCATTTTTTA TERM 7 5421 - 5438 + F 79 -7.1 -4.57353 | opp_overlap 5417, overlap 5397 5431 TCTTTAAGAATTTTT CCATTTT TTAG AAAATGG TTTTCTATAATAGAA TERM 8 5444 - 5461 + G 86 -4.3 -5.77988 | overlap 5440 TAGAAAATGGTTTTC TATAATA GAAA TATTATA TTTTTTTCTCTATGT BBF11 5435 - 5542 + | hypothetical protein TERM 9 5863 - 5852 - T 100 -7.2 -6.25578 | opp_overlap 5851 AGTAAACAAAAAAAA GCCC TTAT GGGC ATCCTTTTCCGGTTT TERM 10 5881 - 5900 + T 70 -8 -3.42056 | overlap 5878 CCTTTTCCGGTTTAG GATAAAGA GAAA TCTTTATC TTATACATTAAGAAT TERM 11 5923 - 5955 + T 70 -6 -4.30308 | gap 1, opp_overlap 5925 5933, overlap 5933 TTAAGAATAATATAT TATAAAAAAATAATC AATG GATTATTTTTTT-TA TTCTTCTTTATTTTC TERM 12 5946 - 5933 - T 79 -3.9 -5.69473 | opp_overlap 5923 5933, overlap 5925 TATATTATAAAAAAA TAATC AATG GATTA TTTTTTTTATTCTTC TERM 13 5933 - 5946 + T 87 -3.9 -6.22691 | opp_overlap 5933 5925, overlap 5923 TATATTATAAAAAAA TAATC AATG GATTA TTTTTTTTATTCTTC BBF13 7381 - 6632 - | hypothetical protein BBF14 7911 - 7354 - | hypothetical protein TERM 14 7563 - 7575 + gH 88 -4.9 -5.8187 | opp_overlap 7563 TTTTAAATATAAATT CTATA TAA TATAG TTTTTTTATTGCGTA TERM 15 7825 - 7840 + gH 75 -3.4 -5.52096 | overlap 7833 TCCATTCTTTTCTTC TATTTT GTTA AAAATA TTTTTTATTGGATTT TERM 16 7928 - 7951 + H 73 -5.4 -4.81852 | opp_overlap 7930 TCTTTTTCCTTATTA CATTAATCAA ATAA TTGTTTAATG TTTTATTACTTGTAA BBF15 8239 - 8370 + | hypothetical protein BBF16 8389 - 8574 + | hypothetical protein BBF17 8772 - 9029 + | hypothetical protein TERM 17 9632 - 9654 + T 75 -6.4 -4.49556 | overlap 9629 ATTATTCAATTAGGT TAGGGATT TAATTCC AATCCCTA TTTATTTACTGCAAA BBF20 10991 - 10698 - | hypothetical protein BBF21 11550 - 11446 - | hypothetical protein BBF22 12018 - 11791 - | protein p23, putative TERM 18 12180 - 12236 + r 93 -11.3 -3.41222 | opp_overlap 12181 12228, overlap 12181 12206 12228 GCAAGGGTAAAATAA ATTCAAGTCTTAATTAAAGATTCTTTT TTT AATAAAATCTTTAATCAAGACTTGAAG TCTTTACAATTCACC TERM 19 12235 - 12181 - R 100 -19.2 -4.68655 | opp_overlap 12181 12180 12206 12228, overlap 12228 CAAGGGTAAAATAAA TTCAAGTCTTAATTAAAGATTCTTTT TTT AATAAAATCTTTAATCAAGACTTGAA GTCTTTACAATTCAC TERM 20 12181 - 12235 + r 100 -14.8 -2.64412 | opp_overlap 12181 12228, overlap 12180 12206 12228 CAAGGGTAAAATAAA TTCAAGTCTTAATTAAAGATTCTTTT TTT AATAAAATCTTTAATCAAGACTTGAA GTCTTTACAATTCAC TERM 21 12399 - 12363 - R 80 -9.7 -3.21416 | opp_overlap 12363 TATTTCTATTACTAA CTACTATTTTTTAAATC AAA GATTATAAAAATAGTAG TTTATATCTTATGTT TERM 22 12363 - 12399 + r 89 -9.7 -4.27297 | opp_overlap 12363 TATTTCTATTACTAA CTACTATTTTTTAAATC AAA GATTATAAAAATAGTAG TTTATATCTTATGTT BBF23 12992 - 12441 - | hypothetical protein TERM 23 13037 - 13023 - R 81 -5.7 -5.27779 | opp_overlap 13023 13018 TTTAACAGTAAAAAA GTACG TTCAG CGTAC TTTTACTATTTTCTC TERM 24 13023 - 13037 + r 77 -6.4 -4.58236 | opp_overlap 13023, overlap 13018 TTTAACAGTAAAAAA GTACGT TCA GCGTAC TTTTACTATTTTCTC BBF24 13793 - 13029 - | hypothetical protein TERM 25 13137 - 13121 - G 71 -8.1 -3.27297 | overlap 13119 ACTCATTAATTAAGA CTTTAAC GCT GTTAAAG CTATGAATTTTTCCC TERM 26 13245 - 13274 + g 78 -8.1 -3.88946 | opp_overlap 13225 13244 13246, overlap 13238 13246 TTCCACTATTGAAAT ATCAATCTTTTTA TCTT TAAAAAGATTGAC TTCTTCTATCGCATC TERM 27 13246 - 13273 + g 89 -11.6 -2.92886 | opp_overlap 13225 13244 13246, overlap 13238 13245 TCCACTATTGAAATA TCAATCTTTTTA TCTT TAAAAAGATTGA CTTCTTCTATCGCAT TERM 28 13273 - 13246 - G 93 -11.6 -3.42395 | opp_overlap 13238 13246 13245, overlap 13225 13244 TCCACTATTGAAATA TCAATCTTTTTA TCTT TAAAAAGATTGA CTTCTTCTATCGCAT BBF25 14329 - 13769 - | hypothetical protein BBF26 15451 - 14351 - | hypothetical protein TERM 29 14597 - 14608 + g 70 -3 -5.18995 | opp_overlap 14597 TTTTTCTTGTTTAAA CTTA TTTT TAAG TTTTTCTGTTATCTT BBF27 15925 - 15755 - | hypothetical protein BBF28 16129 - 15998 - | hypothetical protein TERM 30 16223 - 16206 - R 77 -7.1 -4.55128 | ATTTCTAAATCAAAA GTCATAA TTTT TTATGAC AGCTTTTAAGAGTAG TERM 31 16306 - 16266 - R 80 -10 -2.83012 | opp_overlap 16266 AACTTTATTATTAGA GCTTAATTAAGCATTTAC ACGAG GCAAAGACTTAATTAAGC TCTAATGGCGGTCAC TERM 32 16510 - 16523 + r 78 -5.3 -5.26316 | opp_overlap 16510 TGTCTAAAAATAACT CTGTA AATT TACAG TTTTTTATAAAATAA TERM 33 16583 - 16595 + r 72 -4.9 -5.00388 | TTTTATATCCATCGA GTTTA TAA TAAAC TTTATTTTTGGTTTC TERM 34 16955 - 16967 + r 82 -5.5 -5.47821 | CTGGACAGTTTATAT TGGGG GTT TCCCA TTTTTTTGAATAAGT TERM 35 17127 - 17139 + r 70 -3.5 -5.4492 | CATTCTTTCTTTGCA TTATT TTC AATAA TTTTTTGTGTGTATC BBF30 17415 - 17167 - | hypothetical protein SEQUENCE gi|11496664|ref|NC_001852.1| Borrelia burgdorferi B31 plasmid lp28-2, complete sequence (length 29766) BBG01 116 - 1009 + | hypothetical protein TERM 1 1055 - 1017 - f 93 -9.3 -4.44151 | opp_overlap 1016 1018 1031, overlap 1014 1019 AAAAATAACAAAGAA TATT-CCACCTATAATTTC TAT GAAATT-TAGGTGGAAATA AATTTACAAAGTAAA TERM 2 1018 - 1053 + F 79 -10 -2.64472 | gap 1, opp_overlap 1017 1014 1019, overlap 1016 1031 AAAATAACAAAGAAT ATTCCACCTATAATTTC TAT GAAATT-TAGGTGGAAA TAAATTTACAAAGTA TERM 3 1052 - 1019 - f 100 -13.5 -3.76887 | gap 1, opp_overlap 1018 1016 1031, overlap 1017 1014 AAATAACAAAGAATA TTCCACCTATAATTTC TAT GAAATT-TAGGTGGAA ATAAATTTACAAAGT BBG02 1047 - 1928 + | hypothetical protein TERM 4 2093 - 2131 + T 90 -7.8 -4.98531 | opp_overlap 2097 2099 2103 2105, overlap 2094 2097 CTTAATTATTAGGAG GTAATATTAATATGAAAA AAA TTTTCACATTAATATTAA TTTTTAGTTTAACAA TERM 5 2094 - 2130 + T 95 -11.3 -3.58396 | opp_overlap 2097 2099 2103 2105, overlap 2093 2097 TTAATTATTAGGAGG TAATATTAATATGAAAA AAA TTTTCACATTAATATTA ATTTTTAGTTTAACA TERM 6 2127 - 2097 - T 85 -10.8 -3.10894 | opp_overlap 2094 2093 2097, overlap 2099 2103 2105 ATTATTAGGAGGTAA TATTAATATGAAAA AAA TTTTCACATTAATA TTAATTTTTAGTTTA TERM 7 2097 - 2127 + T 78 -8.6 -3.90592 | opp_overlap 2097 2099 2103 2105, overlap 2094 2093 ATTATTAGGAGGTAA TATTAATATGAAAA AAA TTTTCACATTAATA TTAATTTTTAGTTTA TERM 8 2125 - 2099 - T 74 -9 -3.11272 | opp_overlap 2097 2094 2093, overlap 2097 2103 2105 TATTAGGAGGTAATA TTAATATGAAAA AAA TTTTCACATTAA TATTAATTTTTAGTT TERM 9 2703 - 2651 - T 77 -8.8 -3.36341 | gap 1, opp_overlap 2657, overlap 2649 2654 AAGATTGTTCAAATA TTATTAGGGCTTAAAGAAACTCTCT TGCT AAAGAACTTCTTTAAGCCCTT-CAA TTGTAAATGATTCCA TERM 10 2701 - 2654 - T 82 -10.8 -2.84504 | opp_overlap 2657, overlap 2651 2649 ATTGTTCAAATATTA TTAGGGCTTAAAGAAACTCTCT TGCT AAAGAACTTCTTTAAGCCCTTC AATTGTAAATGATTC TERM 11 2657 - 2698 + T 87 -10.3 -3.24245 | opp_overlap 2654 2651 2649 GTTCAAATATTATTA GGGCTTAAAGAAACTCTCT TGCT AAAGAACTTCTTTAAGCCC TTCAATTGTAAATGA BBG04 2857 - 2750 - | hypothetical protein TERM 12 2814 - 2845 + g 95 -11.2 -4.12603 | gap 1 GTCTTTATGTGAACT GCTATTTCTA-AATC AAA GATTATAGAAATAGC TTCTTGTTTCATCCC TERM 13 2923 - 2943 + H 75 -3.9 -5.56573 | overlap 2927 GTCCACAAGCTTTAC TTCGGGCAG TTC CTGCCTTAG TTTTTATTTCTTTAT TERM 14 2927 - 2939 + H 81 -9.1 -4.00347 | overlap 2923 ACAAGCTTTACTTCG GGCAG TTC CTGCC TTAGTTTTTATTTCT TERM 15 3859 - 3875 + H 71 -8.1 -3.11209 | opp_overlap 3859 3858, overlap 3858 3855 AGCCAAACTATCAAC TTCCTTT AAA AAAGGAA ATTCTTCTTTATATT BBG06 4208 - 5368 + | hypothetical protein BBG07 5378 - 5950 + | hypothetical protein BBG08 5911 - 6678 + | stage 0 sporulation protein J (spoOJ) TERM 16 6699 - 6713 + F 100 -10 -5.00616 | opp_overlap 6699 TTTTTTTTAAAAAAA GTCCAG GCA CTGGAC TTTTTTAGAGAGGAG TERM 17 6713 - 6699 - f 100 -10 -5.40072 | opp_overlap 6699 TTTTTTTTAAAAAAA GTCCAG GCA CTGGAC TTTTTTAGAGAGGAG BBG09 6737 - 7288 + | hypothetical protein TERM 18 7290 - 7280 - T 75 -4 -5.63012 | opp_overlap 7280 AAAAATAAACAAAAA TACT CTT AGTA TATTTAAGCAAACTT TERM 19 7374 - 7351 - T 100 -9.6 -5.52079 | opp_overlap 7351 AGAGTAAAAGAAAAA GACCATTAGC AAAA GCTAAAGGTC TTTTTCAAGGTATTG TERM 20 7351 - 7374 + T 93 -9.6 -4.62302 | opp_overlap 7351 AGAGTAAAAGAAAAA GACCATTAGC AAAA GCTAAAGGTC TTTTTCAAGGTATTG TERM 21 7419 - 7387 - T 72 -8.8 -2.52464 | gap 1, opp_overlap 7379 7382 7381 GTCTTTTTCAAGGTA TTGATAGTTACATAA TAAA TTATG-AACTATCAA TATCAATATTATATA TERM 22 7453 - 7443 - T 70 -4 -5.24989 | opp_overlap 7450 TTATATACTAAAAAA GATA AAA TATC AAGAAATTTGAAAAT BBG10 10779 - 7483 - | hypothetical protein TERM 23 8390 - 8379 - G 72 -5.8 -4.62471 | opp_overlap 8379, overlap 8380 CCCAAGGTCCAAAAA CTGC TCCA GCAG CAGTTTTTAATCCAG TERM 24 8379 - 8393 + g 75 -5.7 -4.75404 | opp_overlap 8379 8380 CCCAAGGTCCAAAAA CTGCT CCAGC AGCAG TTTTTAATCCAGTTT TERM 25 9500 - 9469 - G 90 -11 -3.20858 | overlap 9490 TATCATATCTATCAA CTTTTGAACCCATT TGAT AATGGGCTCAAACG CACCCTTAAAACGAT BBG11 11015 - 10776 - | hypothetical protein BBG12 11491 - 11063 - | hypothetical protein BBG13 12355 - 11501 - | hypothetical protein BBG14 12752 - 12309 - | hypothetical protein TERM 26 13059 - 13074 + Gr 86 -9 -4.07568 | opp_overlap 13058, overlap 13065 TGTGATTTTAAGGAG TCCGAC TTTT GTCGGA TTTTAAAACCAACGA BBG15 12681 - 13169 + | hypothetical protein BBG16 13495 - 13157 - | hypothetical protein BBG17 14341 - 13508 - | hypothetical protein BBG18 14885 - 14376 - | hypothetical protein BBG19 15431 - 14886 - | hypothetical protein BBG20 16482 - 15457 - | hypothetical protein BBG21 17684 - 16494 - | hypothetical protein TERM 27 17853 - 17843 - R 70 -4 -5.10077 | AAAGACCGCAAAAAA CATT CTG AATG CATGTAGACTTGTTG TERM 28 17881 - 17898 + r 79 -7.1 -4.63218 | TTGCTAACACATTGC TGTTTGA AAAT TCAAACA TTTTGTTGACAAACA BBG22 18827 - 18030 - | hypothetical protein BBG23 19619 - 18837 - | hypothetical protein TERM 29 19572 - 19582 + g 77 -3.2 -5.69023 | AATTTTGATATTGTC GGCT TGA AGTC TTTTTTTGATGTTTT BBG24 22310 - 19620 - | hypothetical protein TERM 30 21438 - 21454 + gr 77 -6.6 -4.62336 | AACTTTAGTTGAATC GTAGCT ACTGG AGCTAC TTTTTGACATAACAT TERM 31 22127 - 22180 + gr 70 -5.6 -4.29326 | gap 1, opp_overlap 22127 22129, overlap 22135 CCGTGTAGAATACAA TATCAAGCCCCAAAGAAG-TACA ATTTTCCGA TGTATCTTCTTTGGGATTTGAGA TTTCTTCAGTTTCGG TERM 32 22178 - 22129 - GR 74 -8.2 -3.45788 | gap 1, opp_overlap 22127 22135, overlap 22127 GTGTAGAATACAATA TCAAGCCCCAAAGAAG-TACA ATTTTCCGA TGTATCTTCTTTGGGATTTGA GATTTCTTCAGTTTC BBG25 22659 - 22273 - | hypothetical protein BBG26 23033 - 22659 - | hypothetical protein TERM 33 22724 - 22734 + g 77 -5.4 -5.1523 | overlap 22704 TGACTTCGTCTCTAA GCTT TAA AAGC TTTTTGTATTCTGAA BBG27 23725 - 23033 - | hypothetical protein BBG28 24108 - 23722 - | hypothetical protein TERM 34 23763 - 23775 + g 70 -6.3 -4.10559 | AATTTTTTTCTATTT CTTCT TTT AGAAG TTCTTGTATTTTGAT TERM 35 23836 - 23856 + g 76 -8.5 -3.67342 | CAATATCAAATTTTC TTTATTAAC CGC GTTAATAAA TTCTGTAGTTCTTTT TERM 36 24074 - 24090 + g 74 -2.3 -5.6473 | opp_overlap 24051 24049, overlap 24051 24049 ATTGCTACAATGCTG CCAATAA TAT TTATTTG TTTTTTTACTCTTGT TERM 37 24182 - 24143 - H 100 -14.8 -5.4477 | opp_overlap 24146 24148 AAATTTTTAAAAAAA CCATATTTTACTTATTTT TTAA AAAATAAATAAAATATGG TCTAGCTAGACTGGA TERM 38 24288 - 24304 + H 72 -3.7 -5.40072 | opp_overlap 24289, overlap 24289 GCTAAAAATCAAAAA ACCAAAA ATT TTTTGGA TTTTTTTAAGACAAA TERM 39 24289 - 24303 + H 70 -7.2 -3.83561 | opp_overlap 24289, overlap 24288 CTAAAAATCAAAAAA CCAAAA ATT TTTTGG ATTTTTTTAAGACAA TERM 40 24303 - 24289 - H 91 -7.2 -5.54079 | opp_overlap 24289 24288 CTAAAAATCAAAAAA CCAAAA ATT TTTTGG ATTTTTTTAAGACAA TERM 41 24441 - 24408 - H 100 -18.3 -4.82998 | overlap 24410 TTAAAGGAAAATAAA GTTTAAGTCGCGCTG CATG CAGCGCGACTTAAGC CTCGGACACAAAATA TERM 42 24439 - 24410 - H 100 -19.5 -2.67276 | overlap 24408 AAAGGAAAATAAAGT TTAAGTCGCGCTG CATG CAGCGCGACTTAA GCCTCGGACACAAAA TERM 43 24589 - 24579 - g 70 -3.2 -5.32699 | TTAAACAGTAAAAAA GAAC ACT GTCC TAACACGATTAAAGT TERM 44 25133 - 25179 + G 79 -4.9 -5.46629 | opp_overlap 25133 25134 25157, overlap 25134 TAATTTCTCTAACAA T-TTTTCAGATAAATTTTCTAGA CAT TC-AGAAAGATTATCTGAAAATA TTTTTTTGAAATCTT TERM 45 25134 - 25177 + G 91 -10 -4.36089 | gap 1, opp_overlap 25133 25134 25157, overlap 25133 AATTTCTCTAACAAT TTTTCAGATAAATTTTCTAGA CAT TC-AGAAAGATTATCTGAAAA TATTTTTTTGAAATC TERM 46 25304 - 25318 + G 75 -7.2 -4.1347 | opp_overlap 25304 CTATAGTAATTATAA GAATTC AAA GAATTC TTTATGTAATTCAAA BBG29 24489 - 25955 + | hypothetical protein BBG30 25962 - 26390 + | hypothetical protein TERM 47 27046 - 27079 + G 70 -5.9 -4.35926 | overlap 27044 27047 27050 GGATAATCCTAGTTT GCTTCGCAGTCTGCT ACGT AGTCGACTGCGTAGA TTTTGAATTTACAAT TERM 48 27047 - 27078 + G 79 -9.4 -3.20832 | overlap 27044 27046 27050 GATAATCCTAGTTTG CTTCGCAGTCTGCT ACGT AGTCGACTGCGTAG ATTTTGAATTTACAA TERM 49 27050 - 27075 + G 77 -9.7 -2.78933 | overlap 27044 27047 27046 AATCCTAGTTTGCTT CGCAGTCTGCT ACGT AGTCGACTGCG TAGATTTTGAATTTA BBG31 26567 - 27085 + | hypothetical protein TERM 50 27758 - 27782 + G 70 -2.2 -5.47218 | GGAGAATCGGCAGCA TTACAATGGC ATGCA GATATTGTAA TTTTTTTACATCAAG BBG32 27113 - 27940 + | replicative DNA helicase, putative BBG33 28031 - 28831 + | hypothetical protein BBG34 29618 - 28854 - | hypothetical protein TERM 51 29294 - 29307 + g 71 -3.9 -5.01546 | opp_overlap 29294 TTCTGGTTGTATTAA TAGAT ATCA ATCTA TTTTTGTCTAGATTT TERM 52 29535 - 29562 + g 70 -8 -3.11603 | overlap 29540 29554 AAGATTCTCGCTAAT TAAAATAAATTC ATTC GGATTTATTTTA TAAATTTTTTTTTGT TERM 53 29554 - 29566 + g 95 -3.5 -6.4753 | overlap 29540 29535 ATAAATTCATTCGGA TTTAT TTT ATAAA TTTTTTTTTGTTTGG TERM 54 29643 - 29605 - G 90 -3.4 -6.06723 | opp_overlap 29618, overlap 29618 CCTTTTAAAAAAAAA TTGCATAAAAACATATAA ACA TTATATACTTTTTTGTAA GAATTTCAAAAGAAG SEQUENCE gi|11496697|ref|NC_001853.1| Borrelia burgdorferi B31 plasmid lp28-3, complete sequence (length 28601) BBH01 273 - 467 + | hypothetical protein BBH02 391 - 858 + | hypothetical protein BBH03 926 - 1075 + | hypothetical protein BBH04 1045 - 1368 + | hypothetical protein BBH05 1498 - 1680 + | hypothetical protein BBH06 2970 - 2260 - | hypothetical protein TERM 1 3556 - 3600 + r 75 -9.1 -3.20207 | opp_overlap 3560 3562 3564 3567, overlap 3560 3562 AAGTACATTTTGCAA TTAACATATAATTTATAAAAA CTC TTTTTATAAATTACATATTAA TTGCTAAATCATCTT TERM 2 3596 - 3560 - R 87 -9.9 -3.34522 | opp_overlap 3556 3560 3562, overlap 3562 3564 3567 ACATTTTGCAATTAA CATATAATTTATAAAAA CTC TTTTTATAAATTACATA TTAATTGCTAAATCA TERM 3 3562 - 3594 + r 72 -8.1 -3.27297 | opp_overlap 3560 3562 3564 3567, overlap 3560 3556 ATTTTGCAATTAACA TATAATTTATAAAAA CTC TTTTTATAAATTACA TATTAATTGCTAAAT TERM 4 3594 - 3562 - R 87 -10.3 -3.24032 | opp_overlap 3562 3560 3556, overlap 3560 3564 3567 ATTTTGCAATTAACA TATAATTTATAAAAA CTC TTTTTATAAATTACA TATTAATTGCTAAAT TERM 5 3592 - 3564 - R 87 -10.7 -3.18366 | opp_overlap 3562 3560 3556, overlap 3562 3560 3567 TTTGCAATTAACATA TAATTTATAAAAA CTC TTTTTATAAATTA CATATTAATTGCTAA TERM 6 3589 - 3567 - R 73 -8 -3.72909 | opp_overlap 3562 3560 3556, overlap 3564 3562 3560 GCAATTAACATATAA TTTATAAAAA CTC TTTTTATAAA TTACATATTAATTGC BBH08 3730 - 3590 - | hypothetical protein BBH09 7728 - 3892 - | hypothetical protein TERM 7 5238 - 5251 + g 84 -3.9 -5.87996 | TATAAAGATTGTTGA TAGTA CCCA TACTA TTTTTTTCTTCATTG TERM 8 6770 - 6758 - G 95 -4.9 -5.9873 | opp_overlap 6762 6769, overlap 6767 6769 TCATCATAAAAAAAA TATCT AAA AGATA CAGAAGATCTGTATA TERM 9 6762 - 6790 + g 72 -4.7 -4.83722 | opp_overlap 6758 6767 6769, overlap 6769 CATAAAAAAAATATC TAAAAGATACAGA AGA TCTGTATAATTTA TTTTCTTCTAATATT TERM 10 6783 - 6769 - G 71 -7.2 -3.76611 | opp_overlap 6762 6769, overlap 6758 6767 AAAATATCTAAAAGA TACAGA AGA TCTGTA TAATTTATTTTCTTC TERM 11 6865 - 6847 - G 76 -4 -5.49234 | overlap 6840 ATATGCAATAAAAAA TATTCTTA AAA TAAAAATA ATTGACTCTTCAAGT TERM 12 6994 - 7004 + g 80 -5.4 -5.20154 | TCTCTCATAAAGTAT CTCT CTA AGAG TTTTTTGAATTATCT TERM 13 7823 - 7773 - R 100 -18.3 -3.63627 | gap 1, opp_overlap 7785, overlap 7774 7777 7814 TCTTGATACTCGAAA TGTACTCTAAGATTAGTTTTTTTA AAAT TAAAAAAACTAATCTTAGAGTA-A GTCGGCCAAAACTTG TERM 14 7823 - 7774 - R 100 -19.9 -2.77962 | opp_overlap 7785, overlap 7773 7777 7814 CTTGATACTCGAAAT GTACTCTAAGATTAGTTTTTTTA AAAT TAAAAAAACTAATCTTAGAGTAA GTCGGCCAAAACTTG TERM 15 7820 - 7777 - R 100 -21.6 -2.6583 | opp_overlap 7785, overlap 7773 7774 7814 GATACTCGAAATGTA CTCTAAGATTAGTTTTTTTA AAAT TAAAAAAACTAATCTTAGAG TAAGTCGGCCAAAAC TERM 16 7785 - 7812 + r 82 -10.2 -3.06492 | opp_overlap 7777 7773 7774 AAATGTACTCTAAGA TTAGTTTTTTTA AAAT TAAAAAAACTAA TCTTAGAGTAAGTCG BBH10 8203 - 8000 - | hypothetical protein TERM 17 8250 - 8230 - R 100 -8.5 -5.46698 | opp_overlap 8229 8234 CTCAAAATTAAAAAA TAAATCAAA GTC TTTGATTTA CAATTTTTTATTAAG BBH11 8796 - 8701 - | hypothetical protein TERM 18 9494 - 9507 + G 75 -9.5 -2.76686 | opp_overlap 9494, overlap 9493 9491 TTAGATATGGAAAAA GCCCC CAAA GGGGC ATCTTTATCTGCGAT TERM 19 9507 - 9494 - g 100 -9.5 -4.72846 | opp_overlap 9494 9493 9491 TTAGATATGGAAAAA GCCCC CAAA GGGGC ATCTTTATCTGCGAT BBH12 9455 - 9592 + | hypothetical protein TERM 20 9897 - 9871 - T 76 -9.6 -2.81186 | overlap 9868 9864 AAAATTTAGCAATTA GTAGCATAACAA TAT TTGTTATGCTAG ATATAGCAATGGGAA BBH13 10516 - 9848 - | hypothetical protein TERM 21 9948 - 9958 + g 70 -5.4 -4.62069 | ATTATTATTCTGTTG CTCA CCT TGAG TTTTTCCAATAAAAA TERM 22 10353 - 10336 - G 72 -7.1 -3.96893 | opp_overlap 10339, overlap 10339 AAGAAATCTCAGAAA TAAGGTT CTCG AACCTTA TACCGAATTGTTTTT BBH14 10934 - 10818 - | hypothetical protein BBH15 11005 - 10910 - | hypothetical protein BBH16 11068 - 11190 + | hypothetical protein TERM 23 11474 - 11443 - f 100 -11 -5.63517 | gap 1, opp_overlap 11443 CTTGTAAACAAAAAA GGCCA-GCGAAGCAT CAA ATGCTTCGCCTAACC TTCTAAGCTGCTTGC TERM 24 11977 - 12000 + G 71 -2.6 -5.5604 | gap 1, overlap 11982 11992 CAAACAGCGTAAAGT GGCTCTTTTAA ATT TTAAAA-AGTC TTTTTTATTAATTAC BBH17 11837 - 12028 + | hypothetical protein BBH18 12105 - 13220 + | hypothetical protein BBH19 13590 - 13712 + | hypothetical protein BBH22 14870 - 14763 - | hypothetical protein BBH23 15051 - 15161 + | hypothetical protein BBH24 15136 - 15345 + | hypothetical protein TERM 25 15537 - 15513 - T 78 -4.4 -5.4756 | overlap 15515 AATGCTAATAAAAAA CATTGTCCTT TAAAT AAGAACAATA AAACTCCCATTAGCT BBH25 15810 - 15565 - | hypothetical protein TERM 26 15674 - 15689 + g 72 -6.2 -4.27584 | opp_overlap 15672 GCCCTGGTAAAAGCT TTTTGG AATA CCAAAA TTTTGCATTCCAAAT TERM 27 16262 - 16248 - H 73 -4.4 -5.1286 | opp_overlap 16248, overlap 16220 TAAAAATTATAAAAA TAAATT CTT AATTTA TCCTGTGATAGCCTT TERM 28 16625 - 16598 - g 86 -5.8 -5.50499 | opp_overlap 16606, overlap 16623 GTAGACTGAAAAAAA TTATTTCAGTAA TCAA TTACTTAAATAA AGAATTTAAAAAAAA TERM 29 16702 - 16690 - g 80 -6.3 -4.86862 | TCTAAAAAAGTAAAA GAACT TCG AGTTC ATCATCAAGGAGATA BBH26 16519 - 17415 + | hypothetical protein TERM 30 17529 - 17519 - gf 76 -4 -5.51402 | ATAGATGGAAAAAAA GTAT ACT ATAC GAAAATATTTAAACA TERM 31 17753 - 17767 + GF 71 -7.2 -3.84451 | opp_overlap 17745 17753 TATGCAATAAAGAAA CTCTAT TAT ATAGAG TTTAGGTTTAAAAAA TERM 32 17767 - 17753 - gf 81 -7.2 -4.69214 | opp_overlap 17753, overlap 17745 TATGCAATAAAGAAA CTCTAT TAT ATAGAG TTTAGGTTTAAAAAA BBH27 17408 - 17974 + | hypothetical protein BBH28 17947 - 18702 + | hypothetical protein BBH29 18798 - 19427 + | hypothetical protein TERM 33 19504 - 19516 + F 87 -6.2 -5.64274 | AGTAGTAAAATATTT GCCC ATAGG GGGC TTTTTTTGTGCCTAC TERM 34 19667 - 19697 + F 100 -10 -4.71482 | opp_overlap 19672 TTTATGCTTTTCTCA TTAAATCTGATCAA CCT TTTATCAGATTTAA TTTTTAGGGTTTAGT TERM 35 20217 - 20196 - f 77 -3.1 -5.65513 | overlap 20198 TATTAAGCAAAAAAA TATTAACTT TATA AAGTTAATC TCAATAAATTTATTC BBH31 20997 - 21107 + | hypothetical protein TERM 36 21352 - 21328 - f 70 -7.4 -3.82665 | opp_overlap 21332, overlap 21332 CAGTACACCAGCAAA TAAATACAAT ATTAA ATTGTATTTA TTAAAAATCATATTA BBH32 21470 - 22219 + | antigen, P35, putative TERM 37 22208 - 22227 + F 78 -9.4 -2.94194 | opp_overlap 22208, overlap 22210 22212 GAGATAATTTTAATA TATACCCT TTAA AGGGTATA TATATCCACTTTCTG TERM 38 22227 - 22208 - f 80 -9.4 -3.12005 | opp_overlap 22208 22210 22212 GAGATAATTTTAATA TATACCCT TTAA AGGGTATA TATATCCACTTTCTG BBH33 22678 - 22953 + | hypothetical protein TERM 39 23145 - 23164 + T 83 -9.2 -3.56643 | GCTTGTAGATTATGC CCCGGCAG ATGT CTTCCGGG TTTAAAAAATCTAAA BBH34 23383 - 23189 - | hypothetical protein BBH35 23447 - 23563 + | hypothetical protein BBH36 24180 - 24028 - | hypothetical protein TERM 40 24459 - 24428 - R 100 -13.4 -3.42257 | opp_overlap 24434, overlap 24434 GTTGAAATATATTAA TTAAAATAGCATAA TGAT TTATGCTATTTTAA CCACCATTTTAGTTG TERM 41 24434 - 24453 + r 77 -8 -4.0896 | opp_overlap 24428 24434 ATATATTAATTAAAA TAGCATAA TGAT TTATGCTA TTTTAACCACCATTT TERM 42 24453 - 24434 - R 81 -8 -4.48333 | opp_overlap 24434, overlap 24428 ATATATTAATTAAAA TAGCATAA TGAT TTATGCTA TTTTAACCACCATTT TERM 43 25366 - 25394 + r 78 -7.5 -4.29325 | opp_overlap 25367 25369, overlap 25367 25369 ACTATTACTAATATA AGAGAGTCTTCTT TTA AAGAAGACTCTAA TTTTAAATATTAATA TERM 44 25393 - 25367 - R 95 -11 -3.72742 | opp_overlap 25366 25367 25369, overlap 25369 CTATTACTAATATAA GAGAGTCTTCTT TTA AAGAAGACTCTA ATTTTAAATATTAAT TERM 45 25367 - 25393 + r 90 -11 -3.16872 | opp_overlap 25367 25369, overlap 25366 25369 CTATTACTAATATAA GAGAGTCTTCTT TTA AAGAAGACTCTA ATTTTAAATATTAAT TERM 46 25369 - 25391 + r 100 -13.6 -3.13737 | opp_overlap 25369 25367, overlap 25367 25366 ATTACTAATATAAGA GAGTCTTCTT TTA AAGAAGACTC TAATTTTAAATATTA TERM 47 25391 - 25369 - R 100 -13.6 -3.44124 | opp_overlap 25367 25366 25369, overlap 25367 ATTACTAATATAAGA GAGTCTTCTT TTA AAGAAGACTC TAATTTTAAATATTA BBH37 26371 - 25433 - | hypothetical protein TERM 48 26395 - 26423 + r 84 -9.2 -3.68394 | opp_overlap 26388 26394 26392 26391 ATTACAAATAATTAT TCTTAATTAATA CTAAT TATTAATTAAGA TTATATATCATTTTG BBH38 26614 - 26495 - | hypothetical protein BBH39 26754 - 26858 + | hypothetical protein BBH40 27445 - 26978 - | transposase-like protein, putative TERM 49 27248 - 27264 + g 70 -8.1 -3.00816 | opp_overlap 27247 27248, overlap 27247 AGCCAAACTATCAAC TTCCTTT AAA AAAGGAA ATTCTTCTTWATATT TERM 50 27494 - 27530 + r 100 -9.8 -4.44151 | gap 2, opp_overlap 27491 27494 27506, overlap 27491 27495 TGCGTTACAAATTCA T-CTCCACCTA-AATTTC ATA GAAATTATAGGTGGAGTA TTCTTTGTTATTTTT TERM 51 27529 - 27494 - R 83 -11.4 -2.70354 | gap 1, opp_overlap 27494 27491 27495, overlap 27491 27506 TGCGTTACAAATTCA TCTCCACCTA-AATTTC ATA GAAATTATAGGTGGAGT ATTCTTTGTTATTTT TERM 52 27495 - 27528 + r 100 -14.9 -3.76887 | gap 1, opp_overlap 27494 27491 27506, overlap 27494 27491 GCGTTACAAATTCAT CTCCACCTA-AATTTC ATA GAAATTATAGGTGGAG TATTCTTTGTTATTT BBH41 28197 - 27625 - | hypothetical protein TERM 53 28208 - 28170 - G 88 -7.8 -4.98531 | opp_overlap 28174 28176 28180 28182, overlap 28171 28174 TCGTTAAACTAAAAA TTAATATTAATGTGAAAA TTT TTTTCATATTAATATTAC CTCCTAATAATTAAG TERM 54 28207 - 28171 - G 93 -11.3 -3.58396 | opp_overlap 28174 28176 28180 28182, overlap 28170 28174 CGTTAAACTAAAAAT TAATATTAATGTGAAAA TTT TTTTCATATTAATATTA CCTCCTAATAATTAA TERM 55 28174 - 28204 + g 88 -10.8 -3.10894 | opp_overlap 28171 28170 28174, overlap 28176 28180 28182 TAAACTAAAAATTAA TATTAATGTGAAAA TTT TTTTCATATTAATA TTACCTCCTAATAAT TERM 56 28204 - 28174 - G 80 -8.6 -3.90592 | opp_overlap 28174 28176 28180 28182, overlap 28171 28170 TAAACTAAAAATTAA TATTAATGTGAAAA TTT TTTTCATATTAATA TTACCTCCTAATAAT TERM 57 28176 - 28202 + g 76 -9 -3.11272 | opp_overlap 28174 28171 28170, overlap 28174 28180 28182 AACTAAAAATTAATA TTAATGTGAAAA TTT TTTTCATATTAA TATTACCTCCTAATA SEQUENCE gi|11496735|ref|NC_001854.1| Borrelia burgdorferi B31 plasmid lp28-4, complete sequence (length 27323) BBI01 174 - 608 + | hypothetical protein BBI02 736 - 1104 + | hypothetical protein TERM 1 1419 - 1365 - T 100 -11.9 -4.53303 | gap 1, opp_overlap 1369, overlap 1369 TAGTGTTACATAAAA TGAA-TAGGGCTTAAGACAAATTCTT TATA AAAAACTTGCTTTAAGCCCTATTTCA CGATCATATTGTGAT TERM 2 1414 - 1369 - T 95 -12.9 -3.79162 | opp_overlap 1369, overlap 1365 GTTACATAAAATGAA TAGGGCTTAAGACAAATTCTT TATA AAAAACTTGCTTTAAGCCCTA TTTCACGATCATATT TERM 3 1369 - 1414 + T 75 -8.5 -3.59087 | opp_overlap 1365 1369 GTTACATAAAATGAA TAGGGCTTAAGACAAATTCTT TATA AAAAACTTGCTTTAAGCCCTA TTTCACGATCATATT TERM 4 1584 - 1533 - T 100 -20.8 -3.42768 | opp_overlap 1533 1538 1544, overlap 1538 1544 ACTAAAACTTTACAA TATAACTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAGTTATA TTGTAAAGTGATCAA TERM 5 1533 - 1584 + T 100 -23 -3.34043 | opp_overlap 1533 1538 1544, overlap 1538 1544 ACTAAAACTTTACAA TATAACTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAGTTATA TTGTAAAGTGATCAA TERM 6 1538 - 1579 + T 100 -18.5 -3.75824 | opp_overlap 1533 1538 1544, overlap 1533 1544 AACTTTACAATATAA CTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAG TTATATTGTAAAGTG TERM 7 1579 - 1538 - T 100 -16.3 -3.76226 | opp_overlap 1538 1533 1544, overlap 1533 1544 AACTTTACAATATAA CTAAAATTGCTATAAGAGT ATTT ACTTTTATAGCAATTTTAG TTATATTGTAAAGTG TERM 8 1573 - 1544 - T 93 -9.5 -4.57218 | opp_overlap 1544 1538 1533, overlap 1538 1533 ACAATATAACTAAAA TTGCTATAAGAGT ATTT ACTTTTATAGCAA TTTTAGTTATATTGT TERM 9 1544 - 1573 + T 100 -11.7 -4.57218 | opp_overlap 1538 1533 1544, overlap 1538 1533 ACAATATAACTAAAA TTGCTATAAGAGT ATTT ACTTTTATAGCAA TTTTAGTTATATTGT BBI03 1972 - 1847 - | hypothetical protein BBI04 2219 - 2124 - | hypothetical protein BBI05 2310 - 2188 - | hypothetical protein TERM 10 2228 - 2264 + gH 100 -16.9 -4.86385 | opp_overlap 2239 TTCCCAATGCTTTTT CTATCTTGAAAGAACTT TAA AAGTGCTTTCAAGATAG TTTCTTTTTGCACGT TERM 11 3321 - 3373 + G 84 -6.7 -5.14525 | opp_overlap 3323 3328 3333, overlap 3323 3333 TTCTAGCTCAGCAAA AATAGTAGAAAACTTAATTAAGTTA ATG TAACTTAATTAAGTTTTTAATTAGA TTTTGTATTTTTTTT TERM 12 3371 - 3323 - g 100 -9.3 -4.7373 | opp_overlap 3321 3323 3333, overlap 3328 3333 CTAGCTCAGCAAAAA TAGTAGAAAACTTAATTAAGTTA ATG TAACTTAATTAAGTTTTTAATTA GATTTTGTATTTTTT TERM 13 3323 - 3371 + G 100 -13.7 -2.74275 | opp_overlap 3323 3328 3333, overlap 3321 3333 CTAGCTCAGCAAAAA TAGTAGAAAACTTAATTAAGTTA ATG TAACTTAATTAAGTTTTTAATTA GATTTTGTATTTTTT BBI06 2536 - 3351 + | pfs protein (pfs) TERM 14 3366 - 3328 - T 95 -13.6 -3.04018 | opp_overlap 3323 3321 3333, overlap 3323 3333 TCAGCAAAAATAGTA GAAAACTTAATTAAGTTA ATG TAACTTAATTAAGTTTTT AATTAGATTTTGTAT TERM 15 3361 - 3333 - T 100 -13.5 -4.62069 | opp_overlap 3323 3321 3333, overlap 3328 3323 AAAAATAGTAGAAAA CTTAATTAAGTTA ATG TAACTTAATTAAG TTTTTAATTAGATTT TERM 16 3333 - 3361 + T 100 -13.5 -4.90917 | opp_overlap 3333 3328 3323, overlap 3323 3321 AAAAATAGTAGAAAA CTTAATTAAGTTA ATG TAACTTAATTAAG TTTTTAATTAGATTT BBI07 3441 - 3343 - | hypothetical protein BBI08 3576 - 3755 + | hypothetical protein BBI09 3745 - 3882 + | hypothetical protein TERM 17 4164 - 4145 - g 80 -5.8 -5.16572 | ATTGAAGCTAAAAAA TGCATAAA AACA CTTATGCA CAATGTTGAAACATA BBI10 3911 - 4315 + | hypothetical protein TERM 18 4327 - 4340 + T 70 -2.5 -5.5604 | TTAATTTTAAATGCT TTTTA TATC TAAAA TTTTTTCTTAATTGA TERM 19 4380 - 4341 - T 80 -8.2 -4.2349 | TTTTTATATCTAAAA TTTTTTCTTAATTGAG TTAAAGTG CACAATTAAGAAAAAA TAAAAATAAATCTTT BBI11 4721 - 4623 - | hypothetical protein BBI12 5128 - 5346 + | hypothetical protein TERM 20 5600 - 5590 - f 72 -4 -5.42514 | TTATAAAGTAAAAAA TGAA TTT TTCA AACAAAAGGTGTTTA BBI13 5609 - 5707 + | hypothetical protein TERM 21 5943 - 5917 - f 72 -3.9 -5.27335 | CCTTCTAAAGAAAAA TTATTTTATCT AAAAA AGATCAAATAA GAATAAAAATTAAAA TERM 22 6146 - 6122 - f 79 -8.7 -3.66784 | overlap 6125 TGATTTCTAATATAA TAATAGGCTTA ATC TAAGCCAATTA AGGAGAATATTTATG BBI14 6159 - 6272 + | hypothetical protein TERM 23 6590 - 6575 - f 81 -7.6 -4.38666 | AGACTTAAAAAAAGA TGCCTT AAAT AAGGCA AATACCCTAGATTTG BBI15 6603 - 6833 + | hypothetical protein TERM 24 6893 - 6868 - f 100 -13.5 -4.06502 | GATTTTTAAAGCAAA TTAGGCCTTTA AATA TAAAGGCCTAA TAAAAAAGTTCATTA TERM 25 7124 - 7078 - f 100 -11.4 -4.35604 | opp_overlap 7080, overlap 7079 7080 7082 TTAAGCTACAATAAA TTTATTTAATTTAATTAAATAC TAT GTATTTAATTAAATTAAATATT TGCTTATAATAAATA TERM 26 7123 - 7079 - f 100 -14.9 -3.20639 | opp_overlap 7080, overlap 7078 7080 7082 TAAGCTACAATAAAT TTATTTAATTTAATTAAATAC TAT GTATTTAATTAAATTAAATAT TTGCTTATAATAAAT TERM 27 7122 - 7080 - f 100 -18.4 -2.51661 | opp_overlap 7080, overlap 7079 7078 7082 AAGCTACAATAAATT TATTTAATTTAATTAAATAC TAT GTATTTAATTAAATTAAATA TTTGCTTATAATAAA TERM 28 7080 - 7122 + F 100 -18.4 -4.02108 | opp_overlap 7080 7079 7078 7082 AAGCTACAATAAATT TATTTAATTTAATTAAATAC TAT GTATTTAATTAAATTAAATA TTTGCTTATAATAAA TERM 29 7120 - 7082 - f 100 -16.6 -2.78523 | opp_overlap 7080, overlap 7080 7079 7078 GCTACAATAAATTTA TTTAATTTAATTAAATAC TAT GTATTTAATTAAATTAAA TATTTGCTTATAATA TERM 30 8428 - 8398 - g 78 -2.7 -5.79588 | GGAAAAGCAAAAAAA CTTTTATTAGATT ATAAA AATCTAAAAACAG ATATTAATAAGCTTA BBI16 7183 - 8538 + | hypothetical protein BBI17 8967 - 8821 - | hypothetical protein TERM 31 9798 - 9787 - R 81 -5.8 -5.34632 | AAGAAAATATAAAAA GCTC TAAA GAGC ACAAAAAAGCTGCTC TERM 32 9859 - 9845 - R 77 -7.2 -4.45151 | AATACGCAATTAAAA TGTTTG ACG CAAACA AAGCTGTTGAAGTGT TERM 33 10517 - 10507 - R 73 -2.6 -5.63517 | opp_overlap 10510, overlap 10500 CTCTTAAACAAAAAA TTTT TGT AAAA GCTCAGGGCTTATAT TERM 34 10569 - 10518 - R 100 -11.8 -4.10855 | opp_overlap 10510 10521, overlap 10519 AAAATTTTTGTAAAA GCTCAGGGCTTATATAAGTTCTCT GGCC AAAGAACCTATATAAGCCCTGTTT GCCTCTCATAAAATG TERM 35 10568 - 10519 - R 100 -15.3 -3.0579 | opp_overlap 10510 10521, overlap 10518 AAATTTTTGTAAAAG CTCAGGGCTTATATAAGTTCTCT GGCC AAAGAACCTATATAAGCCCTGTT TGCCTCTCATAAAAT BBI18 10647 - 10495 - | hypothetical protein TERM 36 10521 - 10566 + g 100 -17.9 -3.727 | opp_overlap 10519 10518, overlap 10510 ATTTTTGTAAAAGCT CAGGGCTTATATAAGTTCTCT GGCC AAAGAACCTATATAAGCCCTG TTTGCCTCTCATAAA TERM 37 11467 - 11447 - g 76 -4.1 -5.4833 | CGACTTAACAAAAAA TAAAAACAA AGT TTGTTTTAA GAAAAAGCAAAAAAT BBI19 10749 - 11927 + | hypothetical protein BBI20 11924 - 12478 + | hypothetical protein BBI21 12454 - 13206 + | hypothetical protein TERM 38 13248 - 13218 - f 77 -7.7 -4.02253 | gap 1, opp_overlap 13226, overlap 13214 13211 13223 13226 GTAAGAATTGACAAA CTTAATAAGTCCGG CATG CCGGACTTATTG-G AAATAAGGGCAAAAA TERM 39 13244 - 13223 - f 100 -13.1 -3.34113 | opp_overlap 13226, overlap 13214 13211 13218 13226 AATTGACAAACTTAA TAAGTCCGG CATG CCGGACTTA TTGGAAATAAGGGCA TERM 40 13241 - 13226 - f 91 -10.4 -3.80019 | opp_overlap 13226, overlap 13214 13211 13223 13218 TGACAAACTTAATAA GTCCGG CATG CCGGAC TTATTGGAAATAAGG TERM 41 13226 - 13241 + F 91 -10.4 -3.63515 | opp_overlap 13214 13211 13223 13218 13226 TGACAAACTTAATAA GTCCGG CATG CCGGAC TTATTGGAAATAAGG TERM 42 13298 - 13279 - g 90 -3 -6.13503 | overlap 13281 TATGAATAAAAAAAA CATTAATT TAAA AATTAATA AAAGAATTTCAGAAA TERM 43 13490 - 13500 + G 74 -4 -5.28826 | opp_overlap 13490 GAAGGAGGATATAAA TCTT TTA AAGA TTTTTTATCAGATTT BBI22 13265 - 13837 + | hypothetical protein BBI23 13989 - 14093 + | hypothetical protein BBI24 14334 - 14441 + | hypothetical protein TERM 44 14673 - 14691 + F 70 -3.1 -5.33405 | overlap 14676 ATATTTAAAGACAGT TAGGCCT CTTTT AGGCATA TTTTTGTTTAATAAA TERM 45 14796 - 14759 - f 79 -8.1 -4.13421 | gap 1, opp_overlap 14751 14763, overlap 14751 14746 14764 AATAAAATAGAAGAA TCTAATTTAACTAAACAA TTT TTGTTTAGTTAAAAT-GA TATAGGGCTTTGCAA TERM 46 14763 - 14793 + F 79 -10 -2.64107 | opp_overlap 14746 14759 14764 AAATAGAAGAATCTA ATTTAACTAAACAA TTT TTGTTTAGTTAAAA TGATATAGGGCTTTG TERM 47 14792 - 14764 - f 100 -13.5 -3.33117 | opp_overlap 14763, overlap 14746 14759 AATAGAAGAATCTAA TTTAACTAAACAA TTT TTGTTTAGTTAAA ATGATATAGGGCTTT TERM 48 14919 - 14882 - f 100 -10.3 -4.93365 | overlap 14883 14905 14907 CCCCATAATGAAAAA GTTTTAGTAAAAATATT AAAG AATATTTTTACTAAAAT AAAAATTAAACCAGC TERM 49 14918 - 14883 - f 100 -13.8 -3.55296 | overlap 14882 14905 14907 CCCATAATGAAAAAG TTTTAGTAAAAATATT AAAG AATATTTTTACTAAAA TAAAAATTAAACCAG TERM 50 15256 - 15276 + G 70 -8.5 -2.63616 | opp_overlap 15249 15256, overlap 15255 ATGAATATGAAAAAA TTCTTTATT CTA AATAAAGAA ATTGGTATTGGTAAT TERM 51 15276 - 15256 - g 100 -8.5 -5.28683 | opp_overlap 15255 15256, overlap 15249 ATGAATATGAAAAAA TTCTTTATT CTA AATAAAGAA ATTGGTATTGGTAAT TERM 52 15340 - 15301 - g 78 -9.8 -2.55074 | opp_overlap 15296 15304 GGTAATTGCAATTTA TTATTTTATTTATATTTT TTAA AAAATATAAATAAAATAT AATAAAGATTTATGG TERM 53 15304 - 15337 + G 89 -11.5 -2.80307 | opp_overlap 15301, overlap 15296 AATTGCAATTTATTA TTTTATTTATATTTT TTAA AAAATATAAATAAAA TATAATAAAGATTTA BBI25 15211 - 15342 + | hypothetical protein TERM 54 16297 - 16316 + G 84 -6.6 -5.00616 | opp_overlap 16315, overlap 16315 ATTTTAATTGCTATT TATTCTAA TAAT TTAGAATA TTTTTTAAGAAAAAA BBI26 15352 - 16530 + | multidrug-efflux transporter TERM 55 16651 - 16690 + T 72 -6 -4.41348 | opp_overlap 16642 16654 16689, overlap 16654 TTAATATTAAACAGT ATATCTTTTATCATTTAT CTCT ATGAATGATAAAAGATTC TTTATTTAAAGAGGG TERM 56 16687 - 16654 - T 82 -9.9 -2.98881 | opp_overlap 16651 16654, overlap 16642 ATATTAAACAGTATA TCTTTTATCATTTAT CTCT ATGAATGATAAAAGA TTCTTTATTTAAAGA TERM 57 16654 - 16687 + T 100 -12.1 -4.32678 | opp_overlap 16654 16642, overlap 16651 ATATTAAACAGTATA TCTTTTATCATTTAT CTCT ATGAATGATAAAAGA TTCTTTATTTAAAGA BBI27 17272 - 17093 - | hypothetical protein TERM 58 17310 - 17335 + r 79 -7 -4.64766 | gap 1, opp_overlap 17316 AGCGTTTCTAAATCC GACAGATCTGG TTTGT CCAGAT-TGTC TTTTTGGGATATAAG BBI28 17874 - 17302 - | hypothetical protein BBI29 19183 - 18518 - | hypothetical protein BBI30 19403 - 19510 + | hypothetical protein BBI31 20127 - 19615 - | hypothetical protein BBI32 20479 - 20270 - | hypothetical protein BBI33 20482 - 20592 + | hypothetical protein TERM 59 20745 - 20711 - T 80 -10.2 -2.81584 | opp_overlap 20715, overlap 20710 ATAGTATTTAACAAC TTTAGACCTATCTTTT AGG AAAAGATAGGTCTTTA TATTATGACAATTTC TERM 60 20715 - 20741 + T 100 -15.4 -4.27117 | opp_overlap 20711 20710 TATTTAACAACTTTA GACCTATCTTTT AGG AAAAGATAGGTC TTTATATTATGACAA BBI34 21562 - 20771 - | hypothetical protein TERM 61 21667 - 21627 - H 100 -20.3 -4.20834 | opp_overlap 21630 GTTAAAATAATTAAA TAACCAGTATTTTATTAAT AAG ATTAATAAAATACTGGTTA TATCAAAACTAAAAG TERM 62 21630 - 21664 + H 100 -17.6 -3.48924 | opp_overlap 21627 AAAATAATTAAATAA CCAGTATTTTATTAAT AAG ATTAATAAAATACTGG TTATATCAAAACTAA TERM 63 21767 - 21790 + H 73 -3.2 -5.58522 | overlap 21769 21770 ACATTTTATATTTTT TGTTATTGGC CTCT GCTAATAGTA TTTTTCTTTTGTCTA TERM 64 22052 - 22035 - g 95 -5.6 -5.84381 | opp_overlap 22035 GTACGAATAAAAAAA GAGAAG AATTAA CTTCTC TTTTAAAAAATATTA BBI35 21992 - 22093 + | hypothetical protein BBI36 22931 - 22095 - | antigen, P35, putative TERM 65 22223 - 22233 + g 74 -4 -5.2894 | opp_overlap 22223, overlap 22218 TAGTTGCGTTTAAAG CTTT TAC AAAG TTTTGTTTTATCTTT TERM 66 22942 - 22987 + H 93 -11.7 -3.13382 | opp_overlap 22949 22981 22985, overlap 22949 22955 22982 22983 TTCAAAATATTCTCC TTATAAATTTGAATTAATATT TATT AATTTTAGTTCAAATTTATAA TATTACAATTTGATA TERM 67 23027 - 22981 - H 83 -9.3 -3.61103 | gap 1, opp_overlap 22942 22982 22983 22990, overlap 22985 22988 TAATTTTAGTTCAAA TTTATAATATTACAATTTGATA TTAT TATCAAATTGTAATATTA-AAC TTATTTGATATTGAA TERM 68 22982 - 23027 + H 100 -10.9 -4.08853 | opp_overlap 22981 22985 22988, overlap 22942 22983 22990 AATTTTAGTTCAAAT TTATAATATTACAATTTGATA TTAT TATCAAATTGTAATATTAAAC TTATTTGATATTGAA TERM 69 22983 - 23026 + H 100 -14.4 -3.04589 | opp_overlap 22981 22985 22988, overlap 22942 22982 22990 ATTTTAGTTCAAATT TATAATATTACAATTTGATA TTAT TATCAAATTGTAATATTAAA CTTATTTGATATTGA TERM 70 23024 - 22985 - H 100 -17 -2.65354 | opp_overlap 22942 22983 22982 22990, overlap 22981 22988 TTTAGTTCAAATTTA TAATATTACAATTTGATA TTAT TATCAAATTGTAATATTA AACTTATTTGATATT TERM 71 23021 - 22988 - H 100 -14.3 -3.47617 | opp_overlap 22983 22982 22990, overlap 22985 22981 AGTTCAAATTTATAA TATTACAATTTGATA TTAT TATCAAATTGTAATA TTAAACTTATTTGAT TERM 72 22990 - 23019 + H 93 -12.5 -3.1382 | opp_overlap 22988 22985 22981, overlap 22983 22982 TTCAAATTTATAATA TTACAATTTGATA TTAT TATCAAATTGTAA TATTAAACTTATTTG TERM 73 23116 - 23099 - g 95 -5.6 -5.84381 | opp_overlap 23099 GTACGAATAAAAAAA GAGAAG AATTAA CTTCTC TTTTAAAAAATATTA BBI37 23056 - 23157 + | hypothetical protein BBI38 23995 - 23159 - | hypothetical protein TERM 74 23287 - 23297 + g 74 -4 -5.2894 | opp_overlap 23287, overlap 23282 TAGTTGCGTTTAAAG CTTT TAC AAAG TTTTGTTTTATCTTT TERM 75 24006 - 24051 + r 93 -11.7 -3.13382 | opp_overlap 24013 24045 24049, overlap 24013 24019 24046 24047 TTCAAAATATTCTCC TTATAAATTTGAATTAATATT TATT AATTTTAGTTCAAATTTATAA TATTACAATTTGATA TERM 76 24091 - 24045 - R 83 -9.3 -3.61103 | gap 1, opp_overlap 24006 24046 24047 24054, overlap 24049 24052 TAATTTTAGTTCAAA TTTATAATATTACAATTTGATA ATAA TATCAAATTGTAATATTA-AAC TTATTTGATATTGAA TERM 77 24046 - 24091 + r 100 -10.9 -4.08853 | opp_overlap 24045 24049 24052, overlap 24006 24047 24054 AATTTTAGTTCAAAT TTATAATATTACAATTTGATA ATAA TATCAAATTGTAATATTAAAC TTATTTGATATTGAA TERM 78 24047 - 24090 + r 100 -14.4 -3.04589 | opp_overlap 24045 24049 24052, overlap 24006 24046 24054 ATTTTAGTTCAAATT TATAATATTACAATTTGATA ATAA TATCAAATTGTAATATTAAA CTTATTTGATATTGA TERM 79 24088 - 24049 - R 100 -17 -2.65354 | opp_overlap 24006 24047 24046 24054, overlap 24045 24052 TTTAGTTCAAATTTA TAATATTACAATTTGATA ATAA TATCAAATTGTAATATTA AACTTATTTGATATT TERM 80 24085 - 24052 - R 100 -14.3 -3.47617 | opp_overlap 24047 24046 24054, overlap 24049 24045 AGTTCAAATTTATAA TATTACAATTTGATA ATAA TATCAAATTGTAATA TTAAACTTATTTGAT TERM 81 24054 - 24083 + r 93 -12.5 -3.1382 | opp_overlap 24052 24049 24045, overlap 24047 24046 TTCAAATTTATAATA TTACAATTTGATA ATAA TATCAAATTGTAA TATTAAACTTATTTG TERM 82 24180 - 24163 - R 95 -5.6 -6.02919 | opp_overlap 24163 GTACAAATAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAAATATAAA TERM 83 24163 - 24180 + r 71 -5.6 -4.64766 | opp_overlap 24163 GTACAAATAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAAATATAAA BBI39 25089 - 24223 - | hypothetical protein TERM 84 24306 - 24316 + g 71 -4 -5.18726 | TATTATCTATTTTAA TGTT ATC AACA TTTTTATTGTAAGCG TERM 85 24350 - 24361 + g 77 -3 -5.58051 | opp_overlap 24350 ATGGTTGCGTTTAAA CTTT TAGC AAAG TTTTGTTTTTTCTTT TERM 86 25196 - 25161 - H 80 -9.4 -3.18768 | opp_overlap 25159 25158, overlap 25143 25154 25159 25165 TATTACAATTTAATA TCAATATCAAATAA GTTTAATA TTATTTGATATTGA AAATTTAATTTCTAT TERM 87 25754 - 25770 + G 72 -6.7 -4.09739 | opp_overlap 25754 25753 TTGCAAAAAAGATAC TAAAAGA ATA TCTTTTA TTTTAGGGGGGTTCA BBI40 25518 - 25805 + | hypothetical protein BBI41 26036 - 25794 - | hypothetical protein TERM 88 26085 - 26121 + H 100 -9.8 -4.44151 | gap 2, opp_overlap 26082 26085 26097, overlap 26082 26086 TGCGTTACAAATTCA T-CTCCACCTA-AATTTC ATA GAAATTATAGGTGGAGTA TTCTTTGTTATTTTT TERM 89 26120 - 26085 - H 83 -11.4 -2.70354 | gap 1, opp_overlap 26085 26082 26086, overlap 26082 26097 TGCGTTACAAATTCA TCTCCACCTA-AATTTC ATA GAAATTATAGGTGGAGT ATTCTTTGTTATTTT TERM 90 26086 - 26119 + H 100 -14.9 -3.76887 | gap 1, opp_overlap 26085 26082 26097, overlap 26085 26082 GCGTTACAAATTCAT CTCCACCTA-AATTTC ATA GAAATTATAGGTGGAG TATTCTTTGTTATTT BBI42 26360 - 26914 + | hypothetical protein BBI43 27069 - 26881 - | hypothetical protein SEQUENCE gi|11496779|ref|NC_001855.1| Borrelia burgdorferi B31 plasmid lp36, complete sequence (length 36849) BBK01 188 - 1081 + | hypothetical protein TERM 1 1124 - 1091 - T 73 -7.7 -3.76887 | gap 1, opp_overlap 1090 1103, overlap 1089 AAATAACAAAGAATA TTCCACTTATAATTTC TAT GAAATT-TAGGTGGAA ATAAATTTACAAAGT BBK02 2478 - 1210 - | hypothetical protein TERM 2 1368 - 1381 + g 76 -3.9 -5.48028 | opp_overlap 1368 AAAGACTGGCCACAA TGAAA TTAT TTTCA TTTTCTTTTTCTTTA BBK03 3222 - 2818 - | hypothetical protein BBK04 3595 - 3416 - | hypothetical protein TERM 3 3602 - 3620 + r 72 -3.8 -5.42975 | TTCCGTCAAATCTTC TGGGGTGT AAT ATGCTCCA TTTTTCTTTCTGTCA TERM 4 3824 - 3852 + r 72 -7.6 -3.55761 | TAAAGAATATTTTGA TCTATAAAGGAC TATAT GTCTTTTATGGA TTTAGAACATGAATA BBK05 5096 - 4902 - | hypothetical protein BBK06 5126 - 5236 + | hypothetical protein BBK07 6040 - 5288 - | hypothetical protein TERM 5 5786 - 5796 + g 71 -4 -5.08015 | TTCCTTGGTATTTTT TTGA TCT TCAA TTTCTTTTTTGGATT BBK08 6281 - 6177 - | hypothetical protein BBK09 6366 - 6650 + | hypothetical protein BBK10 6983 - 6804 - | hypothetical protein BBK11 6956 - 7063 + | hypothetical protein TERM 6 7589 - 7579 - g 71 -4 -5.08015 | AATCCAAAAAAGAAA TTGA AGA TCAA AAAAATACCAAGGAA BBK12 7335 - 8033 + | hypothetical protein TERM 7 8174 - 8204 + T 76 -2.6 -5.81412 | opp_overlap 8177, overlap 8177 AAATATCAATCCAAA TAATAAGAAACGGT TGT AACGATTCTTAATA TTTTTTTTGGATAAC BBK13 8880 - 8164 - | hypothetical protein TERM 8 8524 - 8546 + g 74 -8.6 -3.19482 | overlap 8517 8522 8520 TATATATGCTCTATA CTTATAAAGA GAT TCTTTGTAAG TCTCTTCATTAAATT BBK14 8921 - 9016 + | hypothetical protein TERM 9 9017 - 9007 - f 73 -3.2 -5.49579 | TTATAAAAAAGAAAA GCCA AGA TAGC TGCATAATTTAAGTT TERM 10 9173 - 9142 - f 73 -3.2 -5.46629 | opp_overlap 9148 AATATTGCAAAAAAA TCATTTTTAAATTA TATT TAATTTTATAATGA TTACTATTTAATATT TERM 11 9207 - 9233 + F 82 -8.8 -4.13343 | TATAAGTTTGTATTA TGGCTTTGCAGA TAT TCTGTAAAACCA TTTTAAGGGCTTTAT TERM 12 9274 - 9262 - f 80 -3.5 -5.86965 | ATTTATGAAAAAAAA TTAAT ATT ATTAA TCAATATTTTTTTAT BBK15 9373 - 9999 + | antigen, P35, putative BBK16 10223 - 10098 - | hypothetical protein TERM 13 11760 - 11777 + G 70 -8.5 -2.53581 | opp_overlap 11757 11754 CTGGATTAATGAGTA CTCTTTC AGCC GAAAGAG TAGCTTCACAATATA BBK17 10301 - 11947 + | adenine deaminase (adeC) BBK18 12143 - 12051 - | hypothetical protein BBK19 12602 - 13237 + | hypothetical protein TERM 14 13308 - 13251 - g 100 -33.5 -3.00115 | opp_overlap 13251 13264 13268, overlap 13253 13264 13268 GAAACTAAAATACTA CATTTCAATAAAATAAAGAAGCCCCTA AAAA TAGGGGCTTCTTTATTTTATTGAAATG TAACTTGCTAAAGCC TERM 15 13251 - 13308 + G 100 -33.5 -2.56596 | opp_overlap 13251 13253 13264 13268, overlap 13264 13268 GAAACTAAAATACTA CATTTCAATAAAATAAAGAAGCCCCTA AAAA TAGGGGCTTCTTTATTTTATTGAAATG TAACTTGCTAAAGCC TERM 16 13306 - 13253 - g 100 -30.3 -3.03459 | opp_overlap 13251 13264 13268, overlap 13251 13264 13268 AACTAAAATACTACA TTTCAATAAAATAAAGAAGCCCCTA AAAA TAGGGGCTTCTTTATTTTATTGAAA TGTAACTTGCTAAAG TERM 17 13264 - 13295 + G 100 -19 -4.66987 | opp_overlap 13253 13251 13264 13268, overlap 13251 13268 TACATTTCAATAAAA TAAAGAAGCCCCTA AAAA TAGGGGCTTCTTTA TTTTATTGAAATGTA TERM 18 13295 - 13264 - g 100 -19 -4.66987 | opp_overlap 13264 13251 13268, overlap 13253 13251 13268 TACATTTCAATAAAA TAAAGAAGCCCCTA AAAA TAGGGGCTTCTTTA TTTTATTGAAATGTA TERM 19 13268 - 13291 + G 100 -15.4 -4.87892 | opp_overlap 13264 13253 13251 13268, overlap 13264 13251 TTTCAATAAAATAAA GAAGCCCCTA AAAA TAGGGGCTTC TTTATTTTATTGAAA TERM 20 13291 - 13268 - g 100 -15.4 -4.87892 | opp_overlap 13268 13264 13251, overlap 13264 13253 13251 TTTCAATAAAATAAA GAAGCCCCTA AAAA TAGGGGCTTC TTTATTTTATTGAAA BBK20 13212 - 13304 + | hypothetical protein BBK21 14326 - 13577 - | hypothetical protein BBK22 14841 - 14302 - | hypothetical protein TERM 21 14502 - 14518 + g 75 -3.7 -5.4833 | opp_overlap 14503, overlap 14503 CATTTTTAAAGACAA ACTCTAT ATA ATAGAGC TTTTTTATTGCATAA TERM 22 14503 - 14517 + g 71 -7.2 -3.87914 | opp_overlap 14503, overlap 14502 ATTTTTAAAGACAAA CTCTAT ATA ATAGAG CTTTTTTATTGCATA TERM 23 14517 - 14503 - G 76 -7.2 -4.33258 | opp_overlap 14503 14502 ATTTTTAAAGACAAA CTCTAT ATA ATAGAG CTTTTTTATTGCATA TERM 24 14779 - 14789 + g 76 -4 -5.4251 | overlap 14767 14765 TTCTTCAATTCTATT GAAT ATA ATTC TTTTTTCTATATCAC BBK23 15760 - 14834 - | hypothetical protein TERM 25 16100 - 16153 + H 100 -15.1 -3.2819 | opp_overlap 16111, overlap 16097 16102 16104 16108 16111 AACCGAACGATTTTA TTTGTGAATAATTATTGACACAAAT TTTA ACTTGTGTCAATAATTATTCATATA TTAGTGATATTAGAT TERM 26 16102 - 16151 + H 100 -17.7 -3.20307 | opp_overlap 16111, overlap 16097 16100 16104 16108 16111 CCGAACGATTTTATT TGTGAATAATTATTGACACAAAT TTTA ACTTGTGTCAATAATTATTCATA TATTAGTGATATTAG TERM 27 16104 - 16149 + H 100 -18.1 -3.15809 | opp_overlap 16111, overlap 16097 16102 16100 16108 16111 GAACGATTTTATTTG TGAATAATTATTGACACAAAT TTTA ACTTGTGTCAATAATTATTCA TATATTAGTGATATT TERM 28 16108 - 16145 + H 100 -13.1 -3.38951 | opp_overlap 16111, overlap 16097 16104 16102 16100 16111 GATTTTATTTGTGAA TAATTATTGACACAAAT TTTA ACTTGTGTCAATAATTA TTCATATATTAGTGA TERM 29 16111 - 16142 + H 91 -10.4 -3.82205 | opp_overlap 16111, overlap 16108 16104 16102 16100 TTTATTTGTGAATAA TTATTGACACAAAT TTTA ACTTGTGTCAATAA TTATTCATATATTAG TERM 30 16142 - 16111 - H 95 -12.6 -3.62597 | opp_overlap 16108 16104 16102 16100 16111 TTTATTTGTGAATAA TTATTGACACAAAT TTTA ACTTGTGTCAATAA TTATTCATATATTAG TERM 31 16837 - 16827 - g 91 -4 -5.93252 | TTTAAAAATAAAAAA GATA TTT TATC GGAGATTATAATTAA BBK24 16275 - 16886 + | hypothetical protein TERM 32 17333 - 17353 + F 100 -8.5 -5.46698 | opp_overlap 17332 17337 CTTGCTAAAAAATTG TAAATCAAA GTC TTTGATTTA TTTTTTAATTTTGGG TERM 33 17762 - 17817 + F 95 -11.7 -3.39327 | gap 1, opp_overlap 17776 17803, overlap 17763 17764 AAATAAGTTTTGGTC GACT-TGCTCTAAGATTAGTTTTTTT AATTA AAAAAAACTAATCTTAGAGAAGAGTA TTGTGAGTATCAAGA TERM 34 17763 - 17814 + F 100 -14.3 -2.55712 | gap 1, opp_overlap 17776 17803, overlap 17762 17764 AATAAGTTTTGGTCG ACTTGCTCTAAGATTAGTTTTTTT AATTA AAAAAAACTAATCTTAGAG-AAGA GTATTGTGAGTATCA TERM 35 17764 - 17815 + F 100 -14.3 -3.26722 | gap 1, opp_overlap 17776 17803, overlap 17763 17762 ATAAGTTTTGGTCGA CT-TGCTCTAAGATTAGTTTTTTT AATTA AAAAAAACTAATCTTAGAGAAGAG TATTGTGAGTATCAA TERM 36 17802 - 17776 - f 71 -8.3 -3.02144 | opp_overlap 17763 17764 17762 CGACTTGCTCTAAGA TTAGTTTTTTT AATTA AAAAAAACTAA TCTTAGAGAAGAGTA BBK26 18346 - 18465 + | hypothetical protein TERM 37 18594 - 18584 - T 78 -5.4 -5.20154 | ATATAATTCAAAAAA CTCT TAG AGAG ATGCTTTATGAGAAG TERM 38 18725 - 18743 + T 75 -4 -5.49234 | overlap 18736 ACTTAAAGAGGCAAT TATTTTTA TTT TAAGAATA TTTTTTATTGCATAT TERM 39 18820 - 18832 + T 84 -4.9 -5.71983 | opp_overlap 18807 TATACAGATCTTCTA TATCT TTT AGATA TTTTTTTATGATTAA BBK27 19094 - 18804 - | hypothetical protein BBK28 19232 - 19351 + | hypothetical protein BBK29 19807 - 19715 - | hypothetical protein BBK30 19935 - 20036 + | hypothetical protein BBK31 20026 - 20169 + | hypothetical protein TERM 40 20273 - 20296 + F 82 -8.4 -4.37991 | AATATTAGTTTAGTA TTATTACAAT TAAA ATTGTAATAA TTTTGCCTCTTTTTG TERM 41 20377 - 20354 - f 71 -8.4 -3.11208 | opp_overlap 20344 20360, overlap 20351 20360 TCCGACTTAAAATGA TTTAAAGTTA GTAT TAACTTTAAA GGAGAGAAAGCATGA TERM 42 20937 - 20910 - g 89 -10.1 -3.79251 | CATTGCAGGATCAAA CTCTATTTCAT ACACTG ATGAAATAGAG GAAGAGGATTATGAT TERM 43 21213 - 21190 - g 74 -6.8 -4.32669 | opp_overlap 21190, overlap 21187 21193 AAGTTTACAAAAGAA GACCTTGAAA AAAA TTTCAAGACC TTATTAAATTATATT BBK32 20389 - 21453 + | immunogenic protein P35 TERM 44 21476 - 21506 + F 72 -7.7 -3.60627 | opp_overlap 21476 21479, overlap 21463 21479 TTTTTTAATTTAAAA CAGGCTACATAAT ATGTA AATATGTAGCTTG TTTAAAGTAAAATAA BBK33 21720 - 21893 + | hypothetical protein BBK34 21912 - 22133 + | hypothetical protein BBK35 22294 - 22467 + | hypothetical protein BBK36 22545 - 22649 + | hypothetical protein TERM 45 23749 - 23724 - T 93 -9.2 -4.61231 | TCACATTTGTAAAAA TAGCTTGTAT TATTTG ATACAAGCTA TAAGGCTAAGAGAAA BBK38 24146 - 23919 - | hypothetical protein BBK39 24293 - 24670 + | hypothetical protein TERM 46 24668 - 24711 + F 70 -4.2 -5.00616 | gap 1, opp_overlap 24677 24679 24680 24682, overlap 24673 24677 24680 CTTATTTATGACCTG TAG-AATGAATAGTAGCAGTT CTT AACTGCTATTCTTTATTGTTA TTTTTTAAAGCCAAG TERM 47 24673 - 24705 + F 81 -7.9 -4.40692 | opp_overlap 24677 24679 24680 24682, overlap 24668 24677 24680 TTATGACCTGTAGAA TGAATAGTAGCAGTT CTT AACTGCTATTCTTTA TTGTTATTTTTTAAA TERM 48 24677 - 24701 + F 77 -6.5 -4.68451 | opp_overlap 24677 24679 24680 24682, overlap 24673 24668 24680 GACCTGTAGAATGAA TAGTAGCAGTT CTT AACTGCTATTC TTTATTGTTATTTTT TERM 49 24680 - 24698 + F 95 -10.4 -4.37348 | opp_overlap 24679 24677 24680 24682, overlap 24677 24673 24668 CTGTAGAATGAATAG TAGCAGTT CTT AACTGCTA TTCTTTATTGTTATT TERM 50 24698 - 24680 - f 81 -10.4 -2.57274 | opp_overlap 24680 24677 24673 24668, overlap 24679 24677 24682 CTGTAGAATGAATAG TAGCAGTT CTT AACTGCTA TTCTTTATTGTTATT TERM 51 24765 - 24785 + F 93 -9.9 -4.16921 | opp_overlap 24759 AGCCAGAAGCTTAGT CTAGATTAT CCT ATAATCTAG TTTTAGGGGTTCTTA BBK40 25103 - 25657 + | hypothetical protein TERM 52 25791 - 25747 - T 95 -11.2 -3.71517 | gap 1, opp_overlap 25758, overlap 25758 TAAGAGGCAAGATAA TTTTTAAAAAAGCCTAAGATA CAAG TA-CTTAGGCTTTTTTAAAAT AAGAAGATATTGTTG TERM 53 25758 - 25780 + T 75 -5.7 -5.0538 | gap 1, opp_overlap 25758 25747 ATAATTTTTAAAAAA GCCTAAGATA CAAG TA-CTTAGGC TTTTTTAAAATAAGA TERM 54 25780 - 25758 - T 75 -5.7 -5.06103 | gap 1, opp_overlap 25758, overlap 25747 ATAATTTTTAAAAAA GCCTAAGATA CAAG TA-CTTAGGC TTTTTTAAAATAAGA BBK41 26379 - 25813 - | hypothetical protein TERM 55 26401 - 26419 + r 72 -3.8 -5.33124 | GTTGTTTCTGTCTTT GCTGCTCT TCT AGAATAGC TTTTCTTTTCTTCTT BBK42 26803 - 26585 - | hypothetical protein BBK43 26937 - 27044 + | hypothetical protein BBK44 27234 - 27353 + | hypothetical protein BBK45 28315 - 27383 - | immunogenic protein P37, putative TERM 56 28273 - 28297 + g 72 -5.9 -4.49316 | opp_overlap 28266 28269, overlap 28272 28270 AAAATAGAGTATTAT TGTAATACAAT ATC ATTATATTACA TTTATTATTAGTAAT BBK47 30463 - 29477 - | hypothetical protein TERM 57 29867 - 29837 - G 75 -7 -4.07466 | ATTAGAGAATAACAA GTTTGATAAAGTTT CAT AATCTTTTTCAAAC TCAAGGAGTGTATTG TERM 58 30607 - 30593 - R 79 -7.2 -4.64763 | opp_overlap 30574 TTATTTAAAAAATAA TGACTT TTT AAGTCA AACTATAAAGTTAAG BBK48 31585 - 30719 - | immunogenic protein P37, putative BBK49 32822 - 31827 - | hypothetical protein BBK50 34079 - 33081 - | immunogenic protein P37 TERM 59 33574 - 33596 + g 71 -4.1 -5.07941 | overlap 33578 GCATTTACTTTCTCA GCTTCTTCT AAAGA GGTAGAAGC TTTTTGTATAATTTT TERM 60 33983 - 33970 - G 70 -5.3 -4.62984 | opp_overlap 33970 TTATCATAGACAAAA GCTTT AGCT AAAGC TTGTTGCGATTTATT BBK51 34232 - 34330 + | hypothetical protein TERM 61 34350 - 34370 + T 100 -9.9 -4.46112 | opp_overlap 34368 TTTATAGTTTAACTG CTATTACTA GTT TAGTAATAG TTTCTTTAACTAAAG BBK52 35443 - 34595 - | protein p23 TERM 62 35428 - 35414 - G 73 -4.4 -5.03994 | opp_overlap 35414, overlap 35401 TGGTATATATAAAAA TATATT CAA AATATA TATGTTCTTTTTCAT TERM 63 35682 - 35624 - H 89 -12.3 -2.90571 | opp_overlap 35635 AATTTTTTAAGCACA TTTTGT-GTGAACTGCTATTTCTATAATC TTT GATT-TAGAAATAGCAGTTCACTAGATAA TAATAAAGCTAAAAT TERM 64 35635 - 35670 + H 100 -14.4 -3.08464 | gap 1, opp_overlap 35624 CACATTTTGTGTGAA CTGCTATTTCTATAATC TTT GATT-TAGAAATAGCAG TTCACTAGATAATAA BBK53 35868 - 36422 + | outer membrane protein BBK54 36577 - 36389 - | hypothetical protein SEQUENCE gi|11496831|ref|NC_001856.1| Borrelia burgdorferi B31 plasmid lp38, complete sequence (length 38829) BBJ01 482 - 667 + | hypothetical protein BBJ02 927 - 1211 + | hypothetical protein TERM 1 1244 - 1269 + F 100 -14.9 -3.21747 | opp_overlap 1244 TGATATCATGTAAAA GCCTATCCTTT ATAA AAAGGATAGGC TTAATAGTGAACTAC TERM 2 1269 - 1244 - f 100 -14.9 -4.22652 | opp_overlap 1244 TGATATCATGTAAAA GCCTATCCTTT ATAA AAAGGATAGGC TTAATAGTGAACTAC TERM 3 1271 - 1329 + F 90 -10.9 -3.14931 | gap 2, opp_overlap 1276 1281, overlap 1274 1281 TAAAAAGGATAGGCT TAAT--AGTGAACTACTATTTCTATAATC AAA GATTATAGAAATAGTAGTTCACTGGAAAA TTAATAAAACCTAAA TERM 4 1322 - 1276 - f 100 -27.2 -3.05521 | opp_overlap 1274 1271 1281, overlap 1281 AGGATAGGCTTAATA GTGAACTACTATTTCTATAATC AAA GATTATAGAAATAGTAGTTCAC TGGAAAATTAATAAA TERM 5 1317 - 1281 - f 100 -19.9 -3.18728 | opp_overlap 1274 1271 1281, overlap 1276 AGGCTTAATAGTGAA CTACTATTTCTATAATC AAA GATTATAGAAATAGTAG TTCACTGGAAAATTA TERM 6 1281 - 1317 + F 100 -19.9 -3.06133 | opp_overlap 1281 1276, overlap 1274 1271 AGGCTTAATAGTGAA CTACTATTTCTATAATC AAA GATTATAGAAATAGTAG TTCACTGGAAAATTA TERM 7 1466 - 1503 + F 100 -10.3 -4.98531 | opp_overlap 1452 1470 1473 1476, overlap 1452 1467 1470 TTTATTATTAGGGGA GTAATAATAATATGAAA AAAT TTTCATATTATTATTAA TTTTTAGTTTAACAA TERM 8 1467 - 1502 + F 100 -13.8 -3.58396 | opp_overlap 1452 1470 1473 1476, overlap 1452 1466 1470 TTATTATTAGGGGAG TAATAATAATATGAAA AAAT TTTCATATTATTATTA ATTTTTAGTTTAACA TERM 9 1470 - 1499 + F 100 -11.1 -3.90592 | opp_overlap 1452 1470 1473 1476, overlap 1452 1467 1466 TTATTAGGGGAGTAA TAATAATATGAAA AAAT TTTCATATTATTA TTAATTTTTAGTTTA TERM 10 1499 - 1470 - f 90 -11.1 -3.17212 | opp_overlap 1452 1470 1467 1466, overlap 1452 1473 1476 TTATTAGGGGAGTAA TAATAATATGAAA AAAT TTTCATATTATTA TTAATTTTTAGTTTA TERM 11 1496 - 1473 - f 76 -8.4 -3.7282 | opp_overlap 1470 1467 1466, overlap 1452 1470 1476 TTAGGGGAGTAATAA TAATATGAAA AAAT TTTCATATTA TTATTAATTTTTAGT BBJ03 1593 - 1745 + | hypothetical protein BBJ04 2381 - 2268 - | hypothetical protein TERM 12 2590 - 2631 + H 95 -10.5 -3.85509 | opp_overlap 2588 CAGAGATAAATAGTT TTTTTATTTTTAGCTATTG CCTG CTTTAGCTAAAAATAAAAA TTTAGGTTCTATTCA BBJ06 3486 - 3632 + | hypothetical protein TERM 13 3758 - 3772 + T 82 -5.8 -5.63103 | opp_overlap 3752 3758 TTTTACACATCCAAA TACTTT TGA AAAGTA TTTTTTTGATTGCCG BBJ07 4307 - 4164 - | hypothetical protein TERM 14 4300 - 4337 + g 72 -6.5 -4.31459 | gap 1, opp_overlap 4301 4313, overlap 4301 TTTATTAGCAAATTC ATCTCCACCTA-AATTTC ATA GAAATTATAGGTGAAGAA TTCTTTGTTACTTTT TERM 15 4301 - 4336 + g 83 -10 -3.16435 | gap 1, opp_overlap 4301 4313, overlap 4300 TTATTAGCAAATTCA TCTCCACCTA-AATTTC ATA GAAATTATAGGTGAAGA ATTCTTTGTTACTTT TERM 16 4336 - 4301 - G 93 -12.2 -2.68775 | gap 1, opp_overlap 4301 4300, overlap 4313 TTATTAGCAAATTCA TCTCCACCTA-AATTTC ATA GAAATTATAGGTGAAGA ATTCTTTGTTACTTT BBJ08 4576 - 5496 + | hypothetical protein TERM 17 5563 - 5535 - f 79 -8.9 -3.77177 | opp_overlap 5536 5538, overlap 5511 5538 5540 ATTAATATATTTAAA TTAGAGCCTTCTT TAA AAGAAGGCTCTCT TATATTAGTAATCAA TERM 18 5536 - 5562 + F 95 -12.4 -3.72742 | opp_overlap 5535 5538 5540, overlap 5538 TTAATATATTTAAAT TAGAGCCTTCTT TAA AAGAAGGCTCTC TTATATTAGTAATCA TERM 19 5538 - 5560 + F 100 -15 -3.44124 | opp_overlap 5535 5538 5540, overlap 5536 AATATATTTAAATTA GAGCCTTCTT TAA AAGAAGGCTC TCTTATATTAGTAAT TERM 20 5560 - 5538 - f 100 -15 -2.97058 | opp_overlap 5538 5536, overlap 5535 5540 AATATATTTAAATTA GAGCCTTCTT TAA AAGAAGGCTC TCTTATATTAGTAAT TERM 21 5558 - 5540 - f 90 -11.8 -3.03038 | opp_overlap 5538 5536, overlap 5538 5535 TATATTTAAATTAGA GCCTTCTT TAA AAGAAGGC TCTCTTATATTAGTA TERM 22 6629 - 6588 - g 71 -2.5 -5.54885 | gap 1, opp_overlap 6602 6602, overlap 6590 6591 6596 6597 6599 AAGAGCAACAAAAAA TATCAGAATCAGAATCAG AATCTGA CT-ATTCTGATTCTGCTG AAATAAAACAAGCTA TERM 23 6626 - 6591 - g 74 -8.6 -3.21774 | gap 1, opp_overlap 6602 6602, overlap 6590 6588 6596 6597 6599 AGCAACAAAAAATAT CAGAATCAGAATCAG AATCTGA CT-ATTCTGATTCTG CTGAAATAAAACAAG TERM 24 6627 - 6596 - g 80 -8.9 -3.66574 | opp_overlap 6602 6602, overlap 6591 6590 6588 6597 6599 CAAAAAATATCAGAA TCAGAATCAGAAT CTGACT ATTCTGATTCTGC TGAAATAAAACAAGC TERM 25 6626 - 6597 - g 93 -12.4 -2.78318 | opp_overlap 6602 6602, overlap 6591 6590 6596 6588 6599 AAAAAATATCAGAAT CAGAATCAGAAT CTGACT ATTCTGATTCTG CTGAAATAAAACAAG TERM 26 6624 - 6599 - g 74 -9.2 -2.91201 | opp_overlap 6602 6602, overlap 6591 6597 6590 6596 6588 AAAATATCAGAATCA GAATCAGAAT CTGACT ATTCTGATTC TGCTGAAATAAAACA TERM 27 6674 - 6660 - g 71 -7.2 -3.87641 | overlap 6671 AAGAGGCCGTAGAAA TAGCTT GGA AAGCTA CAGTAGAAGCAAAAG BBJ09 6089 - 6862 + | outer surface protein D (ospD) BBJ10 7270 - 7476 + | hypothetical protein TERM 28 7680 - 7701 + T 89 -8.9 -4.58685 | TAAGTATTTTTTGTT TATGCTTAA CATC TTAAGCATA TTTTTAGCCCGCTTT BBJ11 7965 - 7780 - | hypothetical protein TERM 29 8117 - 8154 + r 87 -10.3 -3.18274 | opp_overlap 8108 8122 8141 8152 AGTATATTATTGTCA TTATATTTTAATTAACT CAAG AGATAATTAAAATATAA TTAAATTAGAATCAA TERM 30 8191 - 8170 - R 72 -7.5 -3.52207 | opp_overlap 8170 8172 8174, overlap 8166 TTAAATTAGAATCAA TACATATTT ATAT AAATATGTA TGTATAATTAACTTT BBJ12 8725 - 8633 - | hypothetical protein BBJ13 9155 - 8877 - | hypothetical protein BBJ14 9125 - 9286 + | hypothetical protein TERM 31 9607 - 9581 - TR 73 -4.6 -5.14682 | opp_overlap 9586, overlap 9572 9576 GCATAATAAATAAAA TTTAACTTTATA TCC CATAAAGTTTAA AAAAATATTAGTAAA TERM 32 9930 - 9949 + Tr 80 -6.6 -5.0133 | opp_overlap 9948, overlap 9948 ATTTTAATTTCTATT TATTCTAA AATA TTAGAATA TTTTTTAAAAAAATA BBJ15 10168 - 10040 - | hypothetical protein TERM 33 10415 - 10403 - R 80 -6.2 -5.25893 | ATATATAGCAAAAAA GCCC GATAT GGGC AGTTCCGTTTACAAC BBJ16 11105 - 10518 - | hypothetical protein TERM 34 11152 - 11113 - R 73 -8.8 -2.75963 | opp_overlap 11116, overlap 11112 ATTTTCATTTTAAAC TCCCTTTTTTATATTCCC CCGG GGGAATATAAAAAAATGT TACAAATCTAAAATA TERM 35 11116 - 11149 + r 87 -11.3 -3.05343 | opp_overlap 11113 11112 TTCATTTTAAACTCC CTTTTTTATATTCCC CCGG GGGAATATAAAAAAA TGTTACAAATCTAAA BBJ17 11889 - 11152 - | hypothetical protein TERM 36 11738 - 11721 - GR 80 -5.7 -5.1166 | TATCAAAATTAAAAA CATATTT TCTA AAATATG AAGTTAAAGCATTTT BBJ18 12452 - 11862 - | hypothetical protein BBJ19 13440 - 12445 - | hypothetical protein TERM 37 13331 - 13358 + g 86 -5.8 -5.43866 | opp_overlap 13339 TTTTTTTCAAAACTT TTATTTAAGTAA TTAA TTACTGAAATAA TTTTTTTGAGCCTTG BBJ20 13936 - 13772 - | hypothetical protein TERM 38 14538 - 14505 - H 100 -11.3 -5.09762 | opp_overlap 14509 14515, overlap 14507 CTTTAATAAACAAAA GATAGCACAATAAAA CAAT TTTTATTGTGCTATT AACAACTTTGGCGAC TERM 39 14536 - 14507 - H 100 -13.9 -4.16668 | opp_overlap 14509 14515, overlap 14505 TTAATAAACAAAAGA TAGCACAATAAAA CAAT TTTTATTGTGCTA TTAACAACTTTGGCG TERM 40 14509 - 14534 + H 90 -12.1 -3.05294 | opp_overlap 14507 14505, overlap 14515 AATAAACAAAAGATA GCACAATAAAA CAAT TTTTATTGTGC TATTAACAACTTTGG TERM 41 15538 - 15556 + G 70 -4.7 -4.63218 | opp_overlap 15553 15555 GCAAAAATTTATTTG CATATTT CATTT AAATATG TTTTATTAAAACCAA TERM 42 15590 - 15555 - g 75 -8.6 -3.41073 | opp_overlap 15538 15563, overlap 15553 15556 15572 TATTTCATTTAAATA TGTTTTATTAAAACCA ATTT TAGTTTTAATAAAACC AAGAAAATTATCACC TERM 43 15589 - 15556 - g 93 -12.1 -2.64322 | opp_overlap 15563, overlap 15555 15553 15572 ATTTCATTTAAATAT GTTTTATTAAAACCA ATTT TAGTTTTAATAAAAC CAAGAAAATTATCAC BBJ21 15514 - 15660 + | hypothetical protein TERM 44 15676 - 15694 + T 75 -7.6 -3.8709 | TGTAAAAGATTTAGT TTCTTTAA TAT TTAAAGAA TTTCTAGAGAACTTT BBJ22 16003 - 15902 - | hypothetical protein BBJ23 16505 - 17329 + | hypothetical protein TERM 45 18127 - 18090 - g 100 -15.7 -5.43866 | opp_overlap 18094 18096, overlap 18091 18092 18094 GAATGTTTAAAAAAA GCCACAGCCATATTCCC TAAT GGGAATATGGCTGTGTT GGCAATTGAAAAATT TERM 46 18126 - 18091 - g 100 -19.2 -3.85235 | opp_overlap 18094 18096, overlap 18090 18092 18094 AATGTTTAAAAAAAG CCACAGCCATATTCCC TAAT GGGAATATGGCTGTGT TGGCAATTGAAAAAT TERM 47 18125 - 18092 - g 100 -22.7 -2.90056 | opp_overlap 18094 18096, overlap 18091 18090 18094 ATGTTTAAAAAAAGC CACAGCCATATTCCC TAAT GGGAATATGGCTGTG TTGGCAATTGAAAAA TERM 48 18123 - 18094 - g 100 -19.5 -2.99257 | opp_overlap 18094 18096, overlap 18092 18091 18090 GTTTAAAAAAAGCCA CAGCCATATTCCC TAAT GGGAATATGGCTG TGTTGGCAATTGAAA TERM 49 18094 - 18123 + G 100 -19.5 -3.06261 | opp_overlap 18094 18092 18091 18090, overlap 18096 GTTTAAAAAAAGCCA CAGCCATATTCCC TAAT GGGAATATGGCTG TGTTGGCAATTGAAA TERM 50 18096 - 18121 + G 100 -16.3 -3.08867 | opp_overlap 18094 18092 18091 18090, overlap 18094 TTAAAAAAAGCCACA GCCATATTCCC TAAT GGGAATATGGC TGTGTTGGCAATTGA BBJ24 17388 - 18170 + | hypothetical protein BBJ25 18202 - 19254 + | hypothetical protein BBJ26 19313 - 20008 + | ABC transporter, ATP-binding protein BBJ27 19995 - 21230 + | hypothetical protein TERM 51 21756 - 21746 - g 71 -4 -5.10877 | ACAAGAAATTAAAAA TTCT AAA AGAA GTAATTTATAGAAAG BBJ28 21220 - 21948 + | hypothetical protein BBJ29 21971 - 23008 + | hypothetical protein BBJ30 23018 - 23122 + | hypothetical protein TERM 52 23639 - 23658 + G 82 -9.4 -3.35224 | overlap 23637 CTATTGATAGCTTCA GGATATGA TGCC TCATATCC TCTTTCAGACAATAT BBJ31 23366 - 24088 + | hypothetical protein TERM 53 24141 - 24171 + T 78 -8.5 -3.96497 | opp_overlap 24143 24149, overlap 24143 24166 ATTTATATAGGTGAT AAGTTAAAGTACA TCTAC TGTACTTTAACTA TTGTTATAATTTTCC TERM 54 24143 - 24169 + T 95 -11.1 -3.55505 | opp_overlap 24143 24149, overlap 24141 24166 TTATATAGGTGATAA GTTAAAGTACA TCTAC TGTACTTTAAC TATTGTTATAATTTT TERM 55 24169 - 24143 - T 93 -11.1 -3.35934 | opp_overlap 24143 24141 24166, overlap 24149 TTATATAGGTGATAA GTTAAAGTACA TCTAC TGTACTTTAAC TATTGTTATAATTTT BBJ32 24517 - 24386 - | hypothetical protein BBJ33 24681 - 24794 + | hypothetical protein TERM 56 24854 - 24894 + T 75 -6.5 -4.47707 | opp_overlap 24861 24864, overlap 24851 24856 24857 ACATGGAGTTTGTTG TAATTGATAATTCATTT TTAAATT AAATGAATTATCAAATG TTATTTTTAATGGAA TERM 57 24857 - 24891 + T 82 -10.4 -2.89331 | opp_overlap 24861 24864, overlap 24856 24854 24851 TGGAGTTTGTTGTAA TTGATAATTCATTT TTAAATT AAATGAATTATCAA ATGTTATTTTTAATG BBJ34 26407 - 25337 - | hypothetical protein BBJ35 26858 - 26962 + | hypothetical protein BBJ36 28053 - 26995 - | hypothetical protein TERM 58 27941 - 27963 + g 100 -12.2 -3.95042 | opp_overlap 27947, overlap 27947 TTGCTAGCAGTATCA GAAAAAGAAG TTT CTTCTTTTTC TTTACTTGCGCTTTT TERM 59 27947 - 27957 + g 82 -5.4 -5.38326 | opp_overlap 27947, overlap 27941 GCAGTATCAGAAAAA GAAG TTT CTTC TTTTTCTTTACTTGC TERM 60 27957 - 27947 - G 75 -5.4 -4.93296 | opp_overlap 27941 27947 GCAGTATCAGAAAAA GAAG TTT CTTC TTTTTCTTTACTTGC BBJ37 28442 - 28278 - | hypothetical protein BBJ38 28703 - 28605 - | hypothetical protein TERM 61 28929 - 28917 - R 76 -6.3 -4.81163 | opp_overlap 28917, overlap 28919 GAAATATGAATAAAA GCTTA AAA TAAGC TTGGATAATCTTATT BBJ39 29401 - 29264 - | hypothetical protein TERM 62 29321 - 29309 - G 70 -4.9 -4.65747 | CAATTGTGAACAAAA TTCTT GCA AAGAA TAAAATTGCCTTGGT TERM 63 29862 - 29845 - g 86 -5.6 -5.49569 | opp_overlap 29845 TATGAACACAAAAAA GAGAAG TTAATT CTTCTC TTTTTAAAATATAAA TERM 64 29845 - 29862 + G 75 -5.6 -4.64766 | opp_overlap 29845 TATGAACACAAAAAA GAGAAG TTAATT CTTCTC TTTTTAAAATATAAA BBJ40 29827 - 29922 + | hypothetical protein BBJ41 30771 - 29905 - | antigen, P35, putative TERM 65 29988 - 29998 + g 71 -4 -5.18726 | TATTATCTATTTTAA TGTT ATC AACA TTTTTATTGTAAGCG TERM 66 30032 - 30043 + g 77 -3 -5.58051 | opp_overlap 30032 ATGGTTGCGTTTAAA CTTT TAGC AAAG TTTTGTTTTTTCTTT BBJ42 31133 - 30942 - | hypothetical protein BBJ43 31220 - 32140 + | hypothetical protein BBJ44 32150 - 32254 + | hypothetical protein TERM 67 32771 - 32790 + G 82 -9.4 -3.35224 | overlap 32769 CTATTGATAGCTTCA GGATATGA TGCC TCATATCC TCTTTCAGACAATAT BBJ45 32498 - 33220 + | hypothetical protein TERM 68 33301 - 33275 - T 77 -8.9 -3.35934 | opp_overlap 33275 33273 33298, overlap 33281 TTATATAGGTGATAA GTTAAAGCACA TCTAC TGTACTTTAAC TATTGTTATAGCTTT TERM 69 33961 - 33993 + T 100 -16.7 -3.03124 | opp_overlap 33957 33954 AGTATTAATCATTTT TTTCATACTTTTCAT ACT ATGAAAAGTATGAAA TATTAAAGAATAAAG TERM 70 34134 - 34144 + T 70 -2.6 -5.55001 | TTACTGTTATTGAGG TTTA TAA TAAA TTTTGTTTTTTATTA BBJ46 34668 - 34372 - | hypothetical protein BBJ47 35591 - 34905 - | hypothetical protein BBJ48 36272 - 35634 - | hypothetical protein BBJ49 36455 - 36312 - | hypothetical protein SEQUENCE gi|11496892|ref|NC_001857.1| Borrelia burgdorferi B31 plasmid lp54, complete sequence (length 53561) BBA01 588 - 1073 + | hypothetical protein TERM 1 1174 - 1119 - T 74 -4.9 -5.13016 | opp_overlap 1126, overlap 1123 AATTAAAATTAAAAA TCAATTTGGCAACAGAGAAAGTATT CGCACC AATGCTTTCTCTGTTGGCTTATCAA ATGCACTTAAAATAT TERM 2 1126 - 1167 + T 100 -14 -3.3334 | opp_overlap 1123 1119 ATTAAAAATCAATTT GGCAACAGAGAAAGTATT CGCACC AATGCTTTCTCTGTTGGC TTATCAAATGCACTT BBA02 1238 - 1119 - | hypothetical protein BBA03 1397 - 1906 + | outer membrane protein TERM 3 1933 - 1975 + T 100 -9.4 -5.66868 | opp_overlap 1935 1943, overlap 1935 CTGAAATTTATAATT AATTTAAAAAGCTAGTGGTT TTA AACTGCTAGCTTTTAAAATA TTTTTTTAGTTAATT TERM 4 1973 - 1935 - T 72 -7.6 -3.48474 | opp_overlap 1933 1935, overlap 1943 GAAATTTATAATTAA TTTAAAAAGCTAGTGGTT TTA AACTGCTAGCTTTTAAAA TATTTTTTTAGTTAA TERM 5 1935 - 1973 + T 100 -12 -4.45473 | opp_overlap 1935 1943, overlap 1933 GAAATTTATAATTAA TTTAAAAAGCTAGTGGTT TTA AACTGCTAGCTTTTAAAA TATTTTTTTAGTTAA TERM 6 1965 - 1943 - T 70 -4.8 -4.77896 | opp_overlap 1935 1933, overlap 1935 TAATTAATTTAAAAA GCTAGTGGTT TTA AACTGCTAGC TTTTAAAATATTTTT TERM 7 2001 - 2015 + T 70 -2.8 -5.46706 | opp_overlap 2002, overlap 2002 TAATTAACGAATTAA ATGCAA AAC TTGCAC TTTTTATTTTAGGAT BBA04 2829 - 1981 - | antigen, S2 TERM 8 2581 - 2569 - G 74 -6.3 -4.56597 | TGTTCCTTCTAAAAA CTCTA TTT TAGAG TAATCAATAAATTTA BBA05 4192 - 2939 - | antigen, S1 BBA06 4342 - 4223 - | hypothetical protein TERM 9 4342 - 4319 - G 81 -8.4 -4.15222 | opp_overlap 4319 AGCTGCCTTAATAAA TTGTTTTTTT AAAT AAAAAAACAA TTTAAAATAGCTTAA TERM 10 4319 - 4342 + g 76 -8.4 -3.6215 | opp_overlap 4319 AGCTGCCTTAATAAA TTGTTTTTTT AAAT AAAAAAACAA TTTAAAATAGCTTAA TERM 11 4577 - 4550 - R 95 -10.8 -3.90889 | opp_overlap 4555 AAGCACAAACGGAAA GATTAACTCTTA AGCT TAAGAGCTAATC TAAGGATGAATTAAA BBA07 5091 - 4603 - | chpAI protein, putative TERM 12 5159 - 5149 - H 73 -2.6 -5.75945 | ATTTTTTAAAAAAAA TATA AAT TATA ATATATCTCAACATT BBA08 5250 - 5585 + | hypothetical protein BBA09 5582 - 6454 + | hypothetical protein TERM 13 6686 - 6661 - g 74 -4.9 -5.0538 | gap 1, opp_overlap 6661 6665 TTTCACTTTAAAAAA GAGCTTAACAAA AAT CTTGTTAA-CTC TTTAGATGCTATTAT BBA10 6457 - 7083 + | hypothetical protein BBA11 7145 - 8179 + | hypothetical protein BBA12 8202 - 8381 + | hypothetical protein BBA13 8378 - 8803 + | hypothetical protein BBA14 8793 - 9158 + | hypothetical protein TERM 14 9196 - 9211 + F 100 -9 -5.47218 | opp_overlap 9196 TTCTTTTTCCTGAAA GTCCCA AAAC TGGGAC TTTTTTTAAATAAAA TERM 15 9211 - 9196 - f 79 -9 -3.53012 | opp_overlap 9196 TTCTTTTTCCTGAAA GTCCCA AAAC TGGGAC TTTTTTTAAATAAAA BBA15 9393 - 10214 + | outer surface protein A (ospA) TERM 16 10527 - 10508 - g 72 -5 -4.84017 | AACTTCCGATAAAAA CAATGGTT CTGG AACCCTTG AAGGTTCAAAGCCTG BBA16 10224 - 11114 + | outer surface protein B (ospB) TERM 17 11212 - 11240 + T 83 -7.6 -4.56597 | gap 1, opp_overlap 11219, overlap 11213 11219 CAATTTGTTACTTCT G-GAAAAAGTCTC TTAG GAGGCTTTTTCTC TTTTTAAAAAGAGAA TERM 18 11213 - 11238 + T 100 -11.3 -3.90048 | opp_overlap 11219, overlap 11212 11219 AATTTGTTACTTCTG GAAAAAGTCTC TTAG GAGGCTTTTTC TCTTTTTAAAAAGAG TERM 19 11219 - 11232 + T 76 -4.5 -5.36364 | opp_overlap 11219, overlap 11213 11212 TTACTTCTGGAAAAA GTCTC TTAG GAGGC TTTTTCTCTTTTTAA BBA17 11390 - 11298 - | hypothetical protein TERM 20 11405 - 11373 - G 75 -9.3 -2.59921 | overlap 11372 ATTAATGGGGATAAT TCCTTCACCCAAG CCCAACT CTTGAATGAAGGA TAAATAAATAAAATA TERM 21 11558 - 11587 + H 93 -3.8 -6.47325 | opp_overlap 11546 11558, overlap 11546 ACTTACTTTTGTAAA GTATATTTAACA AATATG TATTAAATATAC TTTTTTTTATTTTTT BBA18 11687 - 12883 + | hypothetical protein BBA19 12931 - 13515 + | hypothetical protein BBA20 13491 - 14243 + | hypothetical protein TERM 22 14747 - 14764 + G 70 -2.1 -5.45652 | overlap 14749 TCTTTTAGAGAAAAT TTTTTTT AAGG AAAAAGA TTTTTTATTAAAAAT BBA21 14274 - 14819 + | hypothetical protein TERM 23 14912 - 14965 + F 100 -27.3 -4.564 | opp_overlap 14918, overlap 14913 ATAAGGACCTGTTAC CTTAAAGGGTTTATTGGGGATTCTT TTAA AAGAATCCCCAATAAACCCTTTAAC TTTTGATTTGAAGTT TERM 24 14913 - 14964 + F 100 -30.8 -3.32756 | opp_overlap 14918, overlap 14912 TAAGGACCTGTTACC TTAAAGGGTTTATTGGGGATTCTT TTAA AAGAATCCCCAATAAACCCTTTAA CTTTTGATTTGAAGT TERM 25 14959 - 14918 - f 100 -26.3 -3.60098 | opp_overlap 14913 14912 ACCTGTTACCTTAAA GGGTTTATTGGGGATTCTT TTAA AAGAATCCCCAATAAACCC TTTAACTTTTGATTT BBA22 15084 - 15242 + | hypothetical protein BBA23 15294 - 15737 + | hypothetical protein TERM 26 15875 - 15907 + T 100 -10.8 -4.9445 | gap 1, opp_overlap 15873 15879, overlap 15874 15879 TTTAAATTATAAGCC CAA-ACCCAACCAGA TGGA TTTGGTTGGGTATTG TTTTTAATTGATTAT TERM 27 15879 - 15902 + T 100 -11.8 -3.86437 | opp_overlap 15873 15879, overlap 15874 15875 AATTATAAGCCCAAA CCCAACCAGA TGGA TTTGGTTGGG TATTGTTTTTAATTG TERM 28 15902 - 15879 - T 84 -9.6 -3.70469 | opp_overlap 15874 15879 15875, overlap 15873 AATTATAAGCCCAAA CCCAACCAGA TGGA TTTGGTTGGG TATTGTTTTTAATTG BBA24 16512 - 15937 - | decorin binding protein A (dbpA) BBA25 17195 - 16632 - | decorin binding protein B (dbpB) TERM 29 17052 - 17065 + g 71 -2.5 -5.43553 | TCCCGTGGCTTCTTT TTTTA TTTT TAAAA TTTTGTTTTTTAAAT BBA26 17386 - 17517 + | hypothetical protein BBA27 17563 - 17682 + | hypothetical protein BBA28 17906 - 17754 - | hypothetical protein TERM 30 17818 - 17830 + g 100 -6.3 -5.85011 | AATCTTTCATTTTGT TCGTT AAC AACGA TTTTTTTGATTTTTG BBA29 18019 - 17894 - | hypothetical protein BBA30 18064 - 18657 + | hypothetical protein TERM 31 19685 - 19661 - g 70 -8.8 -2.63182 | overlap 19660 TTTTAATAGAAAATT TCAATGTAAA TACCG TTTACATTGA GGAGAGAGACAGTAC BBA31 18661 - 20013 + | hypothetical protein TERM 32 20411 - 20421 + F 79 -4 -5.68023 | overlap 20404 TCTATATTTTTGTTC TCAA ACT TTGA TTTTTTTAATTGTAA TERM 33 20811 - 20801 - g 74 -4 -5.20633 | AAAAACAGAGAAAAA CTTA AAT TAAG AGCCAGAGAGCGATA BBA32 20654 - 20848 + | hypothetical protein TERM 34 20882 - 20864 - f 70 -3.2 -5.38249 | opp_overlap 20868, overlap 20865 20868 ATTAACTAGAAAAAA TTAAGTTT ATT AAACTTAT TAAGAATTTTTAAGT BBA33 21023 - 21562 + | hypothetical protein TERM 35 21609 - 21560 - T 88 -8.1 -4.7629 | opp_overlap 21562 21563 21574, overlap 21563 21564 GCACTAATTCAAAAA TAAGTTTTCATAAATAGGGTCAA AATT TTGACCCTATTTGTGAAAAAGTT TAAAAATCAGTTATT TERM 36 21562 - 21607 + T 95 -12.9 -3.58269 | opp_overlap 21560 21563 21564, overlap 21563 21574 ACTAATTCAAAAATA AGTTTTCATAAATAGGGTCAA AATT TTGACCCTATTTGTGAAAAAG TTTAAAAATCAGTTA TERM 37 21563 - 21606 + T 100 -16.4 -2.7464 | opp_overlap 21560 21563 21564, overlap 21562 21574 CTAATTCAAAAATAA GTTTTCATAAATAGGGTCAA AATT TTGACCCTATTTGTGAAAAA GTTTAAAAATCAGTT TERM 38 21606 - 21563 - T 100 -14.2 -4.47888 | opp_overlap 21563 21562 21574, overlap 21560 21564 CTAATTCAAAAATAA GTTTTCATAAATAGGGTCAA AATT TTGACCCTATTTGTGAAAAA GTTTAAAAATCAGTT TERM 39 21605 - 21564 - T 100 -17.7 -3.27648 | opp_overlap 21563 21562 21574, overlap 21563 21560 TAATTCAAAAATAAG TTTTCATAAATAGGGTCAA AATT TTGACCCTATTTGTGAAAA AGTTTAAAAATCAGT TERM 40 21574 - 21595 + T 100 -11.7 -3.8709 | opp_overlap 21564 21563 21560, overlap 21563 21562 ATAAGTTTTCATAAA TAGGGTCAA AATT TTGACCCTA TTTGTGAAAAAGTTT BBA34 23209 - 21620 - | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (oppAV) TERM 41 22415 - 22435 + g 71 -7.7 -3.59981 | overlap 22413 22425 AATAAGGCTTAAGGG GATGTTATT AAA AATAGCATC TATTTCGTTGTGCTC BBA35 23391 - 23281 - | hypothetical protein TERM 42 23395 - 23448 + H 95 -9.9 -4.21676 | opp_overlap 23406 23413 23416, overlap 23396 AAAAAGACGCATTTT TTATTTTAAAACTACAAATAAGGCC TTAA GACCCTATTTGTAGTTTTAAAGAAG TTTTCAATGAATTGT TERM 43 23396 - 23447 + H 90 -11.2 -3.12283 | opp_overlap 23406 23413 23416, overlap 23395 AAAAGACGCATTTTT TATTTTAAAACTACAAATAAGGCC TTAA GACCCTATTTGTAGTTTTAAAGAA GTTTTCAATGAATTG TERM 44 23437 - 23406 - H 100 -13.2 -4.13767 | opp_overlap 23396 23395, overlap 23413 23416 TTTTTTATTTTAAAA CTACAAATAAGGCC TTAA GACCCTATTTGTAG TTTTAAAGAAGTTTT TERM 45 23553 - 23578 + H 73 -2.7 -5.64873 | opp_overlap 23564 TTTAGGCCTGTAAAG GAAATAAAAAT TTAA GTTTTAATTTC TTTTTTGTTCTTAAG BBA36 23710 - 24351 + | lipoprotein TERM 46 24397 - 24374 - f 95 -12.6 -3.5627 | opp_overlap 24374 24395, overlap 24379 ATATGATTTTTTAAA GACAAGTTCT AGTG AGAACTTGTC TTTTTCTTTTTTAAA TERM 47 24374 - 24397 + F 100 -12.6 -5.75538 | opp_overlap 24374 24379, overlap 24395 ATATGATTTTTTAAA GACAAGTTCT AGTG AGAACTTGTC TTTTTCTTTTTTAAA TERM 48 24597 - 24577 - g 80 -8.5 -4.05026 | TTTAAATGCAAATAA TTTAAATGA TGC TCATTTAAA GGTCCAAAAATCAAA TERM 49 24898 - 24888 - g 70 -5.4 -4.51654 | overlap 24885 AAAATTTAAAAACAA GAGA ATT TCTC CTTGGACTACTTTTG BBA37 24434 - 25039 + | hypothetical protein TERM 50 25065 - 25103 + F 95 -10 -4.20918 | gap 1, opp_overlap 25067 25073, overlap 25073 TTTTCTGCATTTCAA TATTAAAA-GGTAGAGA AACAGC TCTCTACCTTTTTAATA TTTATTGGGATTGGA TERM 51 25100 - 25067 - f 85 -10.5 -3.05844 | opp_overlap 25065 25073, overlap 25073 TTCTGCATTTCAATA TTAAAAGGTAGAGAA ACAG CTCTCTACCTTTTTA ATATTTATTGGGATT TERM 52 25094 - 25073 - f 93 -9.5 -4.43012 | opp_overlap 25065 25073, overlap 25067 ATTTCAATATTAAAA GGTAGAGAA ACAG CTCTCTACC TTTTTAATATTTATT TERM 53 25073 - 25094 + F 100 -8.8 -4.97461 | opp_overlap 25073 25067, overlap 25065 ATTTCAATATTAAAA GGTAGAGA AACAGC TCTCTACC TTTTTAATATTTATT BBA38 25389 - 26630 + | hypothetical protein BBA39 26642 - 27229 + | hypothetical protein BBA40 27326 - 27934 + | hypothetical protein TERM 54 28858 - 28840 - g 71 -2.4 -5.4505 | TTTGGCAACAAAAAA TTCAATCC TTA GGATAAAA TTGAGCTAAAAAATG BBA41 27950 - 28867 + | hypothetical protein BBA42 28871 - 29323 + | hypothetical protein BBA43 29320 - 29694 + | hypothetical protein BBA44 29688 - 30008 + | hypothetical protein BBA45 30030 - 30569 + | hypothetical protein TERM 55 31361 - 31388 + G 70 -5.6 -4.33739 | gap 1 TCAAAGAAGGGGTTA GTCTC-TCAGGCG ATC CGATTGATGAGAC TTTTACGCTTTTTTA BBA46 30646 - 31716 + | hypothetical protein BBA47 31716 - 32138 + | hypothetical protein BBA48 32197 - 32685 + | hypothetical protein BBA49 32678 - 32896 + | hypothetical protein BBA50 32905 - 34302 + | hypothetical protein BBA51 34321 - 34884 + | hypothetical protein BBA52 34924 - 35769 + | outer membrane protein TERM 56 35763 - 35786 + F 84 -4.8 -5.73563 | TCTTGAAGATCAGTT TATTTAAATT TTTG AATTTGAATA TTTTTTTGATTTGCT BBA53 35890 - 36165 + | hypothetical protein BBA54 36192 - 36470 + | hypothetical protein BBA55 36558 - 37487 + | hypothetical protein BBA56 37477 - 38046 + | hypothetical protein BBA57 39341 - 38097 - | hypothetical protein TERM 57 38595 - 38610 + g 79 -4.8 -5.52096 | overlap 38586 38585 38607 AAGCTCTCTAAATTC TTTAGA TGTT TCTAAA TTTTTTATTGCATTT TERM 58 39439 - 39425 - H 100 -10 -5.19879 | opp_overlap 39425 39426 TTTTAAATATAAAAA TCCCCT TTA AGGGGA TTTAAGGGGGTATCA TERM 59 39425 - 39439 + H 89 -10 -3.55071 | opp_overlap 39425, overlap 39426 TTTTAAATATAAAAA TCCCCT TTA AGGGGA TTTAAGGGGGTATCA BBA58 39566 - 39769 + | hypothetical protein BBA59 40048 - 39809 - | lipoprotein BBA60 40981 - 40148 - | surface lipoprotein P27 TERM 60 40262 - 40272 + g 71 -4 -5.1101 | GTGAGGCAGTAGGTC CAAT TCT ATTG TTTTTTCGCTAATAG TERM 61 40540 - 40550 + g 71 -4 -5.09426 | TCTCAATATTTTTAA TTTC TTT GAAA TTTTTTAAAGTTGAG TERM 62 41126 - 41101 - R 87 -7 -5.12617 | opp_overlap 41101 41123 TAATTATTGAAAAAA GAAGTTCTCT AATGCA AAAGAACTTC TTTGGAGGTAGTTAA TERM 63 41283 - 41267 - R 77 -7.9 -4.07535 | opp_overlap 41265 41267 AATTTGTACAAAGAA GGCTCGC GTT GGGAGCC TCTTTGAAACGTGTG TERM 64 41267 - 41283 + r 70 -7.9 -3.36073 | opp_overlap 41267, overlap 41265 AATTTGTACAAAGAA GGCTCGC GTT GGGAGCC TCTTTGAAACGTGTG BBA61 41955 - 41332 - | hypothetical protein TERM 65 41715 - 41727 + g 86 -6.3 -5.28778 | opp_overlap 41715 TTTTTAATTGAAGTA GGTTT TTT AAACC TTTTTTATCCATACT BBA62 42203 - 42409 + | lipoprotein BBA63 42576 - 42451 - | hypothetical protein TERM 66 42537 - 42508 - G 100 -15.1 -5.5762 | opp_overlap 42507 42506 ATTAAATATAAAAAA GGGGAAAGAGGTT TTTA AACCCCTCTCCCC CCTTTTGAATGCAAA BBA64 43483 - 42560 - | antigen, P35 TERM 67 43583 - 43598 + r 79 -9 -3.6502 | opp_overlap 43583 GAATTCAAAAAAAAA GAGAGC ATGC GCTCTC TTTGGGTACAAGGTC TERM 68 43598 - 43583 - R 100 -9 -6.15259 | opp_overlap 43583 GAATTCAAAAAAAAA GAGAGC ATGC GCTCTC TTTGGGTACAAGGTC BBA65 44469 - 43621 - | hypothetical protein TERM 69 44590 - 44572 - R 90 -4.6 -6.22691 | opp_overlap 44572 GAACAATAAAAAAAA GAAGAG TCCAGTG CTCTTC TTTTGATTAAATAGT BBA66 45883 - 44648 - | antigen, P35, putative TERM 70 45486 - 45499 + g 76 -8.1 -3.80746 | overlap 45487 TGTTTTGTTAGTGAT GCAGC TCTT GCTGC TGTTGTTTTTGGCAG TERM 71 46039 - 45997 - H 100 -16.8 -4.39877 | opp_overlap 45999 46010, overlap 45999 46010 GTAATAATCAATAAA TATAAATAAAAAAGAGCAAA TAC TTTGCTCTTTTTTATTTATT CTACTACTGGCCCTA TERM 72 46037 - 45999 - H 100 -19.4 -3.78931 | opp_overlap 45999 46010, overlap 45997 46010 AATAATCAATAAATA TAAATAAAAAAGAGCAAA TAC TTTGCTCTTTTTTATTTA TTCTACTACTGGCCC TERM 73 45999 - 46037 + H 100 -19.4 -3.44051 | opp_overlap 45999 45997 46010, overlap 46010 AATAATCAATAAATA TAAATAAAAAAGAGCAAA TAC TTTGCTCTTTTTTATTTA TTCTACTACTGGCCC TERM 74 46026 - 46010 - H 100 -9.5 -5.7827 | opp_overlap 45999 46010, overlap 45999 45997 AATATAAATAAAAAA GAGCAAA TAC TTTGCTC TTTTTTATTTATTCT TERM 75 46010 - 46026 + H 100 -9.5 -5.82036 | opp_overlap 46010 45999 45997, overlap 45999 AATATAAATAAAAAA GAGCAAA TAC TTTGCTC TTTTTTATTTATTCT BBA67 46021 - 46200 + | hypothetical protein TERM 76 46365 - 46348 - T 95 -5.6 -6.09133 | opp_overlap 46348 GAGTCTAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAAATATCAA TERM 77 46348 - 46365 + T 71 -5.6 -4.64766 | opp_overlap 46348 GAGTCTAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTAAAATATCAA BBA68 47164 - 46409 - | hypothetical protein TERM 78 47367 - 47350 - R 86 -5.6 -5.78622 | opp_overlap 47350 TGAGCCTAAAAAAAA GAGAAG TTTTAG CTTCTC TTTTTTAAAATATAA TERM 79 47350 - 47367 + r 78 -6.3 -5.07567 | opp_overlap 47350 TGAGCCTAAAAAAAA GAGAAGT TTTA GCTTCTC TTTTTTAAAATATAA BBA69 48203 - 47412 - | hypothetical protein TERM 80 48358 - 48375 + r 91 -8.5 -5.07567 | opp_overlap 48358 GTAAGCTTAAAAAAA GAGAAGT TAAT ACTTCTC TTTTTTAAAATATAA TERM 81 48375 - 48358 - R 100 -8.5 -5.47399 | opp_overlap 48358 GTAAGCTTAAAAAAA GAGAAGT TAAT ACTTCTC TTTTTTAAAATATAA BBA70 49158 - 48520 - | hypothetical protein TERM 82 48556 - 48578 + g 75 -3.4 -5.41746 | overlap 48557 TTCAATTTTTTGAAT TTCTTGGGGA ACT TCTCCAACAG TTTTTTTCAAAGCTT TERM 83 48842 - 48854 + g 77 -4.9 -5.34381 | TCGTAATCCAAGGAT GAATA AAT TATTC TTTTTATTTGCATTT TERM 84 49326 - 49309 - R 100 -5.6 -6.23209 | opp_overlap 49309 GTAAGCAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTTTAAAAAATA TERM 85 49309 - 49326 + r 81 -5.6 -5.41143 | opp_overlap 49309 GTAAGCAAAAAAAAA GAGAAG AATTAA CTTCTC TTTTTTTAAAAAATA BBA71 49796 - 49383 - | hypothetical protein BBA72 50031 - 49789 - | hypothetical protein TERM 86 49877 - 49890 + g 83 -6.7 -4.95957 | opp_overlap 49877 49876, overlap 49886 TTTTGATTTAAAGAC TCTGG ATTT CCAGA TTTTTGGTTGCTTTC TERM 87 50153 - 50166 + r 73 -2.5 -5.63374 | overlap 50123 50162 TCTCTATTTTATGTT TTTAA TATT TTAAA TTTTTTTAATGTTAA BBA73 51112 - 50222 - | antigen, P35, putative TERM 88 50708 - 50722 + g 82 -2.8 -6.02914 | opp_overlap 50708, overlap 50710 GTCTTTTAACATAAA GTCAAT ATT ATTGTC TTTTTTTTCTGTGAA TERM 89 52091 - 52109 + G 83 -7.5 -4.72272 | CCAAAAAGCTGTTTC TGTTGCT GGTGA AGCAACA TTTTTAATAGAGAAG BBA74 51642 - 52415 + | outer membrane porin (oms28) BBA75 52591 - 52493 - | hypothetical protein TERM 90 52812 - 52797 - g 74 -6.1 -4.46854 | overlap 52808 CTATTTAATAAGAAA TGGGC ACACAA GCCCA TTGGAGCAGGTGGTT thyX 52642 - 53439 + | FAD-dependent thymidylate synthase SEQUENCE gi|11497007|ref|NC_001903.1| Borrelia burgdorferi plasmid cp26, complete sequence (length 26498) BBB01 16 - 324 + | hypothetical protein BBB02 751 - 308 - | hypothetical protein BBB03 2186 - 837 - | hypothetical protein TERM 1 2406 - 2425 + r 78 -9.4 -2.96585 | opp_overlap 2406, overlap 2408 TATCTCCCAAAAAAA GAGCTATT TATA AATAGCTC TCTAATATTGTGTAT TERM 2 2425 - 2406 - R 100 -9.4 -5.41143 | opp_overlap 2406 2408 TATCTCCCAAAAAAA GAGCTATT TATA AATAGCTC TCTAATATTGTGTAT BBB04 3807 - 2476 - | PTS system, cellobiose-specific IIC component (celB) TERM 3 2619 - 2606 - G 81 -2.3 -5.93809 | overlap 2607 CCTGTAGAAAAAAAA GCTGC AATA GGAGC AGGGGTTGTCCATGG TERM 4 4016 - 3961 - H 81 -7.4 -4.84492 | opp_overlap 3964 3965 3970 3980 3993 3997 4002 4008, overlap 3962 3963 4002 GCAATGATAATAAAA TCCTTATAAGATATATTTATAATAAA ATTA TTTATTTTAAATATATCTTATAATAT AATATTTGTAAGATA TERM 5 4015 - 3962 - H 95 -10.9 -3.49611 | opp_overlap 3964 3965 3970 3980 3993 3997 4002 4008, overlap 3961 3963 4002 CAATGATAATAAAAT CCTTATAAGATATATTTATAATAAA ATTA TTTATTTTAAATATATCTTATAATA TAATATTTGTAAGAT TERM 6 4014 - 3963 - H 88 -12.2 -2.68682 | opp_overlap 3964 3965 3970 3980 3993 3997 4002 4008, overlap 3962 3961 4002 AATGATAATAAAATC CTTATAAGATATATTTATAATAAA ATTA TTTATTTTAAATATATCTTATAAT ATAATATTTGTAAGA TERM 7 3964 - 4013 + H 100 -15.7 -2.99719 | opp_overlap 3963 3962 3961 4002, overlap 3965 3970 3980 3993 3997 4002 4008 ATGATAATAAAATCC TTATAAGATATATTTATAATAAA ATTA TTTATTTTAAATATATCTTATAA TATAATATTTGTAAG TERM 8 3970 - 4007 + H 91 -10.3 -3.49516 | opp_overlap 3963 3962 3961 4002, overlap 3965 3964 3980 3993 3997 4002 ATAAAATCCTTATAA GATATATTTATAATAAA ATTA TTTATTTTAAATATATC TTATAATATAATATT BBB05 4084 - 4431 + | PTS system, cellobiose-specific IIA component (celC) BBB06 4440 - 4757 + | PTS system, cellobiose-specific IIB component (celA) BBB07 4769 - 5866 + | outer surface protein, putative BBB08 6517 - 5888 - | hypothetical protein TERM 9 7332 - 7316 - g 70 -5.1 -4.652 | AAATTATTTGAAAAA TCAGACG CTC CCTCTGA AACTTACGAAACATT TERM 10 7670 - 7640 - g 95 -11.4 -4.27886 | opp_overlap 7639 7636 TTTGAAATATATAAA CCACTTCTTTTAAA ATT CTTAAAAGAAGTAG ATCATTGCATAAAAA BBB09 6677 - 7714 + | hypothetical protein TERM 11 8536 - 8521 - g 95 -3.4 -6.38492 | overlap 8529 ATGAAGAAAAAAAAA TTATAA AATT TTATAA AAAAAATCTAGAAAA BBB10 7836 - 8765 + | hypothetical protein TERM 12 8829 - 8807 - g 95 -2.8 -6.5058 | overlap 8808 AGAAACAAAAAAAAA TTTTTTCAAC AAA ATTGAAAAAT TAGAAAACAAAATTA TERM 13 8828 - 8808 - g 74 -6.3 -4.44858 | overlap 8807 GAAACAAAAAAAAAT TTTTTCAAC AAA ATTGAAAAA TTAGAAAACAAAATT TERM 14 8883 - 8837 - g 100 -14.2 -4.72556 | opp_overlap 8842, overlap 8842 8879 TGAAAAATTAGAAAA CAAAATTATTTATCACACAAAA ATC TTTAGCATGATAAATAATTTTG AAGCAAAACCCAAAA TERM 15 8878 - 8842 - g 93 -8.3 -5.22137 | opp_overlap 8842, overlap 8837 AATTAGAAAACAAAA TTATTTATCACACAAAA ATC TTTAGCATGATAAATAA TTTTGAAGCAAAACC BBB11 8781 - 9299 + | hypothetical protein TERM 16 9391 - 9379 - g 90 -3.5 -6.07627 | opp_overlap 9379, overlap 9387 ACTCTCAAAAAAAAA TAATA AAA TATTA TTAATAGATTTAGAT BBB12 9275 - 10036 + | hypothetical protein TERM 17 10081 - 10023 - f 100 -34 -2.73123 | opp_overlap 10000 9992 10026 10033, overlap 10000 10026 10033 10055 AAAATTTTTTAAGCA TAATTTCAAATTAGTTCCATATGGAACT AAA AGTTCCATATGGAACTAATTTGAAATTA TGCAATGGAGTAAAA TERM 18 10078 - 10026 - f 100 -31.3 -3.51032 | opp_overlap 9992 10026 10033, overlap 10023 10033 10055 ATTTTTTAAGCATAA TTTCAAATTAGTTCCATATGGAACT AAA AGTTCCATATGGAACTAATTTGAAA TTATGCAATGGAGTA TERM 19 10026 - 10078 + F 100 -31.3 -3.33162 | opp_overlap 10026 10023 10033 10055, overlap 9992 10033 ATTTTTTAAGCATAA TTTCAAATTAGTTCCATATGGAACT AAA AGTTCCATATGGAACTAATTTGAAA TTATGCAATGGAGTA TERM 20 10033 - 10071 + F 100 -23.6 -3.69354 | opp_overlap 10026 10023 10033 10055, overlap 10026 AAGCATAATTTCAAA TTAGTTCCATATGGAACT AAA AGTTCCATATGGAACTAA TTTGAAATTATGCAA TERM 21 10071 - 10033 - f 100 -23.6 -3.70469 | opp_overlap 10033 10026, overlap 10026 10023 10055 AAGCATAATTTCAAA TTAGTTCCATATGGAACT AAA AGTTCCATATGGAACTAA TTTGAAATTATGCAA TERM 22 10068 - 10055 - f 75 -6.7 -4.44548 | opp_overlap 10033 10026, overlap 10033 10026 10023 CATATGGAACTAAAA GTTCC ATAT GGAAC TAATTTGAAATTATG BBB13 10104 - 10652 + | hypothetical protein TERM 23 10702 - 10690 - T 74 -4.9 -5.13473 | opp_overlap 10690 ACTATATTTAAAAAA TGTTT CAA AAACA CTTTACAAAAAAATA TERM 24 10791 - 10808 + T 100 -11.3 -4.2687 | opp_overlap 10789, overlap 10799 TTAGAATAATAAGTT GGCTACC ACAA GGTAGCC TTTGTCATTTTTGCA BBB14 11417 - 10920 - | hypothetical protein TERM 25 11687 - 11703 + G 84 -6.7 -5.09426 | AATATGAAATTTAGT TTAGAAT TTA ATTCTAA TTTTTTAAAATTCAA BBB15 11636 - 11740 + | hypothetical protein BBB16 12014 - 13606 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (oppAIV) TERM 26 13656 - 13619 - T 73 -5.7 -4.88407 | overlap 13621 TGATTTAAGTAAAAA TGGTTTATAGCTAGATC TTTT GATTTGGCTATAAACAA AAATAAGAAATGAAT TERM 27 13696 - 13660 - T 100 -14.1 -5.38054 | opp_overlap 13663 13667, overlap 13663 GGCTATAAACAAAAA TAAGAAATGAATTCTTA AAT TAAGAATTCATTTCTTT AACTTAATTATTTTA TERM 28 13693 - 13663 - T 100 -15.8 -4.76311 | opp_overlap 13663 13667, overlap 13660 TATAAACAAAAATAA GAAATGAATTCTTA AAT TAAGAATTCATTTC TTTAACTTAATTATT TERM 29 13663 - 13693 + T 100 -15.8 -3.827 | opp_overlap 13660 13663, overlap 13667 TATAAACAAAAATAA GAAATGAATTCTTA AAT TAAGAATTCATTTC TTTAACTTAATTATT TERM 30 13667 - 13689 + T 100 -10.8 -4.50761 | opp_overlap 13663 13660, overlap 13663 AACAAAAATAAGAAA TGAATTCTTA AAT TAAGAATTCA TTTCTTTAACTTAAT BBB17 15107 - 13893 - | inositol-5-monophosphate dehydrogenase guaA 16718 - 15132 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 31 15873 - 15838 - G 83 -10 -3.32066 | opp_overlap 15838 AAGAATTTTGTAGAA GCATCAATATATTTTA TATT TAAATCATATTGATGC TTTAATTCTAGTATT TERM 32 15838 - 15873 + g 75 -7.8 -4.03782 | opp_overlap 15838 AAGAATTTTGTAGAA GCATCAATATATTTTA TATT TAAATCATATTGATGC TTTAATTCTAGTATT TERM 33 16333 - 16319 - G 73 -4.3 -5.07652 | opp_overlap 16332 GTTCTGAAAATAAAA GAGAT TTTTC ATCTC TTAGAAAGATTTCAG TERM 34 16772 - 16829 + H 100 -12 -5.0538 | gap 1, opp_overlap 16775 16777 16817 16827, overlap 16776 16777 AAAATCAAATTAAGA CAATATTTTTCAAATTCTTCAATATTT ATTCA AGATATTGAAGAATTTGAAAAA-ATTA TTTTTTCAAATAAAA TERM 35 16826 - 16775 - H 95 -11.5 -3.80697 | gap 1, opp_overlap 16772 16776 16777, overlap 16777 16817 ATCAAATTAAGACAA TATTTTTCAAATTCTTCAATATTT ATTCA AGATATTGAAGAATTTGAAAAA-A TTATTTTTTCAAATA TERM 36 16776 - 16826 + H 100 -15.3 -4.63089 | opp_overlap 16775 16777 16817, overlap 16772 16777 TCAAATTAAGACAAT ATTTTTCAAATTCTTCAATATTT ATTCA AGATATTGAAGAATTTGAAAAAA TTATTTTTTCAAATA TERM 37 16777 - 16825 + H 100 -18.8 -3.36769 | opp_overlap 16775 16777 16817, overlap 16776 16772 CAAATTAAGACAATA TTTTTCAAATTCTTCAATATTT ATTCA AGATATTGAAGAATTTGAAAAA ATTATTTTTTCAAAT TERM 38 16825 - 16777 - H 100 -16.6 -3.47516 | opp_overlap 16777 16776 16772, overlap 16775 16817 CAAATTAAGACAATA TTTTTCAAATTCTTCAATATTT ATTCA AGATATTGAAGAATTTGAAAAA ATTATTTTTTCAAAT TERM 39 16839 - 16817 - H 84 -9.4 -3.73302 | opp_overlap 16777 16776 16772, overlap 16777 16775 16827 16830 16831 CAAGATATTGAAGAA TTTGAAAAAA TTA TTTTTTCAAA TAAAAAATTGAAAAA BBB19 16903 - 17535 + | outer surface protein C (ospC) TERM 40 17596 - 17625 + T 100 -7.3 -6.14618 | opp_overlap 17596 17601 GAAAAATAAAGTCAA TATAAGTCAAGAA AGAT TTCTTGGCTTTTA TTTTTTTATTTTCTC BBB20 17733 - 17623 - | hypothetical protein BBB21 17750 - 17845 + | hypothetical protein TERM 41 17921 - 17941 + T 88 -4.9 -5.96219 | TTTATAATTTAGGTT TTTGAAATT GCA AATTTTAAA TTTTTTTTATAAATA BBB22 19321 - 17966 - | hypothetical protein TERM 42 19248 - 19236 - G 89 -7.7 -5.03314 | overlap 19238 GCCATGCTTAAAAAA GTGGT AAT ACCAC CGATAATTTCTTTTT BBB23 20822 - 19431 - | hypothetical protein TERM 43 19535 - 19519 - G 70 -2.3 -5.40072 | overlap 19494 19520 19527 TCTTTGCTAAAAAAA TTAAATG ATA CATTTAC TAAAATATAAAATGC TERM 44 20833 - 20860 + r 72 -7.9 -3.47751 | opp_overlap 20832 TTCAATAATAATTAT TAGGCTTTTAA TTCTTT TTAAAGGCCTA TTGTGCCTTATTAAG BBB24 21364 - 20858 - | hypothetical protein BBB25 21851 - 21339 - | hypothetical protein TERM 45 22457 - 22441 - g 82 -5.3 -5.38348 | overlap 22434 AAAAAGAGTAAAAAA TTTTTAA AAA TTAAAAA CACAAAAGAAAAAAT BBB26 21898 - 22593 + | hypothetical protein BBB27 23154 - 22603 - | hypothetical protein BBB28 23255 - 24499 + | hypothetical protein TERM 46 24756 - 24746 - f 72 -4 -5.30189 | opp_overlap 24736 24746, overlap 24736 TACAAGATTAAAAAA TCTT GTT AAGA TATTAAGCGTATTAT TERM 47 26295 - 26278 - g 73 -8.5 -3.06129 | overlap 26272 ATAATATTACATACA TTGATGC ATGT GCATCAA GATTAAGAGTCAATC BBB29 24825 - 26453 + | PTS system, maltose and glucose-specific IIABC component (malX) SEQUENCE gi|11497048|ref|NC_001904.1| Borrelia burgdorferi B31 plasmid cp9, complete sequence (length 9386) BBC01 163 - 1272 + | hypothetical protein BBC02 1282 - 1839 + | hypothetical protein TERM 1 2049 - 2031 - g 80 -6 -5.05153 | opp_overlap 2031, overlap 2033 ATTTCAAAAAAGAAA TATTCCAC AGG GTGGAAAA TATTAAAATTTTAAA TERM 2 2047 - 2033 - g 81 -8.6 -4.13692 | opp_overlap 2031, overlap 2031 TTCAAAAAAGAAATA TTCCAC AGG GTGGAA AATATTAAAATTTTA BBC03 1892 - 2452 + | hypothetical protein TERM 3 2515 - 2529 + T 76 -4.4 -5.38398 | overlap 2485 TTTAAAATAAGATTT TATAAA AGC TTTATA TTTTTGTATTTTTAT TERM 4 2609 - 2637 + T 93 -12 -3.19522 | opp_overlap 2605 ACTAAATATAGTTTT GTAGGAAATAAT TTTTC ATTATTTCCTAC TTGAATATTGGATCG BBC04 2700 - 2590 - | hypothetical protein TERM 5 2659 - 2711 + g 81 -8.8 -4.0896 | gap 1, opp_overlap 2659 2661, overlap 2660 2661 ATTGGATCGTAAAAA TA-TTAGGGCTTTACTAAGTTCTTT TAAA AGAGAATTTAGCAAAGCCCTAAGTC TTTTAACAAAAATTT TERM 6 2710 - 2659 - G 82 -8.2 -4.62336 | opp_overlap 2659 2660 2661, overlap 2661 ATTGGATCGTAAAAA TATTAGGGCTTTACTAAGTTCTTT TAAA AGAGAATTTAGCAAAGCCCTAAGT CTTTTAACAAAAATT TERM 7 2660 - 2709 + g 100 -13.9 -3.63922 | opp_overlap 2659 2661, overlap 2659 2661 TTGGATCGTAAAAAT ATTAGGGCTTTACTAAGTTCTTT TAAA AGAGAATTTAGCAAAGCCCTAAG TCTTTTAACAAAAAT TERM 8 2661 - 2708 + g 100 -17.4 -2.78032 | opp_overlap 2661 2659, overlap 2660 2659 TGGATCGTAAAAATA TTAGGGCTTTACTAAGTTCTTT TAAA AGAGAATTTAGCAAAGCCCTAA GTCTTTTAACAAAAA TERM 9 2708 - 2661 - G 100 -15.2 -3.92746 | opp_overlap 2660 2659 2661, overlap 2659 TGGATCGTAAAAATA TTAGGGCTTTACTAAGTTCTTT TAAA AGAGAATTTAGCAAAGCCCTAA GTCTTTTAACAAAAA BBC05 2804 - 3712 + | hypothetical protein TERM 10 3742 - 3726 - T 100 -12.3 -4.72277 | opp_overlap 3724 AATAATACAAATAAA TCCCCCT TAA AGGGGGA AAATATTAATCAATT TERM 11 3859 - 3878 + T 70 -5 -4.79053 | TTTTAAAACTTAATC TTTAGGCA AGTC TGCCAAAA TTTGTTTTAATATTT BBC06 4377 - 3853 - | exported protein A (eppA) TERM 12 4429 - 4405 - R 78 -9.5 -3.02471 | overlap 4420 GCTTTATTATATACA TTCTTATTAGC AAT ACTAATAAGAA TTAGAACAAGACTAA BBC07 4788 - 4504 - | hypothetical protein TERM 13 4921 - 4911 - H 70 -2.6 -5.55695 | opp_overlap 4911 TAAGAATACAAAAAA TAAA AAT TTTA TTTTGCATAGGGCCT TERM 14 5792 - 5802 + G 70 -5.4 -4.52505 | opp_overlap 5792, overlap 5794 TATTTAGGCAAAAAC CCTA AAA TAGG TTTTACATTTTTATT TERM 15 5895 - 5861 - g 100 -11.7 -4.03234 | opp_overlap 5862 5866 5869 5893, overlap 5862 5866 5869 GTGCTGCTACATAAA TCAAACAAGACTAAT TATTT ATTAGTCTTGTTTGT ACTGTTAGTATACTT TERM 16 5862 - 5894 + G 100 -15.2 -2.79589 | opp_overlap 5861 5862 5866 5869, overlap 5866 5869 5893 TGCTGCTACATAAAT CAAACAAGACTAAT TATTT ATTAGTCTTGTTTG TACTGTTAGTATACT TERM 17 5894 - 5862 - g 100 -15.2 -3.01726 | opp_overlap 5862 5866 5869 5893, overlap 5861 5866 5869 TGCTGCTACATAAAT CAAACAAGACTAAT TATTT ATTAGTCTTGTTTG TACTGTTAGTATACT TERM 18 5890 - 5866 - g 91 -10.2 -4.18042 | opp_overlap 5862 5866 5869, overlap 5862 5861 5869 GCTACATAAATCAAA CAAGACTAAT TATTT ATTAGTCTTG TTTGTACTGTTAGTA TERM 19 5866 - 5890 + G 91 -10.2 -4.07455 | opp_overlap 5866 5862 5861 5869, overlap 5862 5869 GCTACATAAATCAAA CAAGACTAAT TATTT ATTAGTCTTG TTTGTACTGTTAGTA TERM 20 5887 - 5869 - g 70 -6.1 -4.1958 | opp_overlap 5866 5862 5869, overlap 5866 5862 5861 ACATAAATCAAACAA GACTAAT TATTT ATTAGTC TTGTTTGTACTGTTA TERM 21 5869 - 5887 + G 70 -6.1 -4.14977 | opp_overlap 5869 5866 5862 5861, overlap 5866 5862 ACATAAATCAAACAA GACTAAT TATTT ATTAGTC TTGTTTGTACTGTTA BBC08 5534 - 5980 + | hypothetical protein BBC10 6808 - 6281 - | rev protein (rev) BBC11 6974 - 7771 + | hypothetical protein TERM 22 7865 - 7898 + T 72 -7.5 -3.5241 | overlap 7864 7866 7868 TATTTCTAATAATCT TTATCAGTGTCCC AGTCAATA GGGGCACTGATAC TATTTGTAAACGCTA TERM 23 7866 - 7897 + T 83 -11 -2.71125 | overlap 7865 7864 7868 ATTTCTAATAATCTT TATCAGTGTCCC AGTCAATA GGGGCACTGATA CTATTTGTAAACGCT TERM 24 7868 - 7895 + T 76 -9.2 -2.89797 | overlap 7866 7865 7864 TTCTAATAATCTTTA TCAGTGTCCC AGTCAATA GGGGCACTGA TACTATTTGTAAACG BBC12 9203 - 7911 - | hypothetical protein TERM 25 8483 - 8461 - G 70 -7.9 -3.36492 | opp_overlap 8449 8446, overlap 8465 CTTTTAATTCTACAA TTAATAGGT TTATT ACCTATTAA AAAGAACAAATTACA