TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.713413 %AT, 1232861 nt, 6596 terms. Intergenic: 0.743782 %AT, H2T: 279039 nt, 1857 terms; T2T: 57095 nt, 839 terms; H2H: 80114 nt, 1084 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|203283903|ref|NC_011224.1| Borrelia duttonii Ly plasmid pl11, complete sequence (length 11226) BDU_16001 974 - 1825 + | antigen P35-like protein, lipoprotein TERM 1 1860 - 1887 + T 100 -7.9 -5.10208 | ATAACTCAAATCTTA TAGAGAGGAAA TAACTT TTTTCTCTCTA TTTTTATTGCAATTA TERM 2 2232 - 2246 + T 80 -4.4 -5.62219 | opp_overlap 2223 2232, overlap 2223 2221 2237 ATCATATAATAAAAT TATTAT ATT ATAATA TTTTTTTAGTATATT TERM 3 2237 - 2267 + T 71 -5 -4.82901 | opp_overlap 2232, overlap 2221 2232 ATAATAAAATTATTA TATTATAATATTTT TTT AGTATATTATAATA TTTTTATCAAAGGGC BDU_16002 3247 - 2252 - | putative lipoprotein TERM 4 3533 - 3499 - R 74 -5.1 -4.8269 | opp_overlap 3505, overlap 3500 TATAATTATTAAAAA TGCCAGTTTTATACG TTAAT CATATAAAATTGGCT AATAATTATATTATA TERM 5 3532 - 3500 - R 77 -8.6 -3.48529 | opp_overlap 3505, overlap 3499 ATAATTATTAAAAAT GCCAGTTTTATACG TTAAT CATATAAAATTGGC TAATAATTATATTAT TERM 6 3539 - 3549 + r 87 -2.6 -6.28401 | opp_overlap 3539, overlap 3536 AAAATTGGCTAATAA TTAT ATT ATAA TTTTTTTATTTTTTA TERM 7 4727 - 4683 - R 83 -3.8 -5.88565 | gap 1, overlap 4684 TGTATAACAAAAAAA GCCAGCCTGCAT-CTTTAAAT CAAC ATTTAAAATACGCAAACTGGA TCAGGTGGTGGCTCA TERM 8 4726 - 4684 - R 75 -7.3 -4.11512 | gap 1, overlap 4683 GTATAACAAAAAAAG CCAGCCTGCAT-CTTTAAAT CAAC ATTTAAAATACGCAAACTGG ATCAGGTGGTGGCTC TERM 9 4890 - 4876 - R 74 -2.9 -5.70522 | opp_overlap 4876 AATAATAATAAAAAA GTATA ATTTA TATAC CTATATTTGAACGTG BDU_16003 5830 - 5012 - | Probable lipoprotein thyl 6888 - 6055 - | thymidylate synthase-complementing protein BDU_16005 7910 - 7128 - | putative lipoprotein TERM 10 8455 - 8418 - g 83 -8.5 -4.31397 | AGGGGCATAAAACAA TGCAACAAGTTGTTCCA GGTG TAGGACAACCTGTGGCA ACTATGAAGCCTGTT TERM 11 8971 - 8959 - g 74 -4.9 -5.12987 | GGAAAGAAAAAGAAA TATTG ATG CAATA GCTAGAAGGTCGAGA BDU_16006 8183 - 9112 + | hypothetical protein TERM 12 9198 - 9168 - f 74 -6.9 -4.23723 | opp_overlap 9165 9168 9169, overlap 9169 CAATAGTATTTAAAA GGAGAGTCTTCTT GTTGA AAGGAGACTCTCT TAGGTTTTATTTAAG TERM 13 9169 - 9197 + F 100 -12.6 -3.48914 | opp_overlap 9168 9169, overlap 9168 9165 AATAGTATTTAAAAG GAGAGTCTTCTT GTTGA AAGGAGACTCTC TTAGGTTTTATTTAA TERM 14 9197 - 9169 - f 85 -10.4 -3.13511 | opp_overlap 9168 9169 9165, overlap 9168 AATAGTATTTAAAAG GAGAGTCTTCTT GTTGA AAGGAGACTCTC TTAGGTTTTATTTAA TERM 15 9427 - 9454 + F 85 -8.6 -4.2711 | opp_overlap 9427, overlap 9422 TTTATGATTGGAAAA CGATATTGAATT TTTT AAATCAATATCG TTTGATTATTTTTAT TERM 16 9454 - 9427 - f 83 -8.6 -4.15565 | opp_overlap 9427 9422 TTTATGATTGGAAAA CGATATTGAATT TTTT AAATCAATATCG TTTGATTATTTTTAT BDU_16007 9662 - 10255 + | hypothetical protein TERM 17 10250 - 10266 + F 78 -6.7 -4.55798 | GAATATAGAAATTCG CATTAAT AAT ATTAATG TTTTAGTTTACAGTA BDU_16008 10384 - 11226 + | immunogenic protein P35 SEQUENCE gi|203283912|ref|NC_011226.1| Borrelia duttonii Ly plasmid pl15, complete sequence (length 15049) bdr_1 241 - 765 + | bdr protein BDU_15002 1374 - 829 - | hypothetical protein TERM 1 1393 - 1405 + r 86 -4.9 -5.76237 | GTCTCTCCTTTTGCA TTTTG CAT CAAAA TTTTTTCTTTGTCTG BDU_15003 3026 - 1371 - | hypothetical protein TERM 2 3188 - 3146 - H 70 -3.7 -5.25735 | gap 2, opp_overlap 3148 3150 3163, overlap 3149 3151 TCAAAAAATTAAAAA GAATACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-ATGA ATTTGTAACGTAAGT TERM 3 3185 - 3149 - H 95 -9.8 -4.64346 | gap 2, opp_overlap 3148 3150 3163, overlap 3146 3151 AAAAATTAAAAAGAA TACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-A TGAATTTGTAACGTA TERM 4 3150 - 3185 + H 83 -11.4 -2.7083 | gap 1, opp_overlap 3149 3146 3151, overlap 3148 3163 AAAATTAAAAAGAAT ACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAGA TGAATTTGTAACGTA TERM 5 3184 - 3151 - H 100 -14.9 -3.87792 | gap 1, opp_overlap 3150 3148 3163, overlap 3149 3146 AAATTAAAAAGAATA CTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG ATGAATTTGTAACGT BDU_15004 3234 - 4373 + | transposase IS605 OrfB TERM 6 4453 - 4482 + G 73 -8.9 -2.75712 | gap 1, opp_overlap 4452 4453 GGATGAAACAAGAAG CTATTTCTATAATC TTT GATT-TAGAAATAG TAGTTCACTCGATAA TERM 7 4482 - 4453 - g 76 -8.9 -3.06839 | gap 1, opp_overlap 4453, overlap 4452 GGATGAAACAAGAAG CTATTTCTATAATC TTT GATT-TAGAAATAG TAGTTCACTCGATAA BDU_15005 4440 - 4970 + | hypothetical protein BDU_15006 5002 - 5373 + | hypothetical protein TERM 8 5521 - 5474 - T 100 -16.8 -3.43071 | gap 1, opp_overlap 5475, overlap 5475 TTTTATAGGAATTAA GGTGAACTACTATTTCTA-AATC AAA GATTATAGAAATAGTAGTTCACT TATATTCTTAAAGTT TERM 9 5475 - 5520 + T 100 -20.3 -3.8372 | gap 1, opp_overlap 5475 5474 TTTATAGGAATTAAG GTGAACTACTATTTCTA-AATC AAA GATTATAGAAATAGTAGTTCAC TTATATTCTTAAAGT TERM 10 5520 - 5475 - T 100 -20.3 -2.65521 | gap 1, opp_overlap 5475, overlap 5474 TTTATAGGAATTAAG GTGAACTACTATTTCTA-AATC AAA GATTATAGAAATAGTAGTTCAC TTATATTCTTAAAGT bdr_2 6338 - 5700 - | bdr protein TERM 11 6628 - 6580 - H 100 -22.4 -4.72986 | opp_overlap 6580 TATGGTTATTAAAAA GTAAACTATTTTTCACATAAAA TCATT TTTTATGTGAAAAATAGTTTAC TTTTTAATAACCATT TERM 12 6580 - 6628 + H 100 -22.4 -4.73388 | opp_overlap 6580 TATGGTTATTAAAAA GTAAACTATTTTTCACATAAAA TCATT TTTTATGTGAAAAATAGTTTAC TTTTTAATAACCATT ppap2 6683 - 7789 + | ORFe-like protein, plasmid partitioning associated protein-2 ppap1 7799 - 8359 + | plasmid partitioning associated protein-1 TERM 13 9112 - 9058 - g 90 -11.1 -3.59402 | gap 1, opp_overlap 9068 9074 9077, overlap 9074 9077 GGTATATTAAATGAA TTTTTGAGTAGGATAACAATGTCCAG TTAA CTGGACATTGTTATCCTA-TAATACA AGTTAAAGGGGGAAT pf32 8335 - 9087 + | PF32 plasmid partition protein TERM 14 9068 - 9103 + F 100 -22.2 -2.79831 | opp_overlap 9058 9074 9077, overlap 9074 9077 ATGAATTTTTGAGTA GGATAACAATGTCCAG TTAA CTGGACATTGTTATCC TATAATACAAGTTAA TERM 15 9097 - 9074 - f 100 -14 -3.44051 | opp_overlap 9068 9074 9077, overlap 9058 9077 TTTTGAGTAGGATAA CAATGTCCAG TTAA CTGGACATTG TTATCCTATAATACA TERM 16 9074 - 9097 + F 100 -14 -3.484 | opp_overlap 9074 9058 9077, overlap 9068 9077 TTTTGAGTAGGATAA CAATGTCCAG TTAA CTGGACATTG TTATCCTATAATACA TERM 17 9094 - 9077 - f 88 -9.9 -3.85864 | opp_overlap 9074 9068 9077, overlap 9074 9058 TGAGTAGGATAACAA TGTCCAG TTAA CTGGACA TTGTTATCCTATAAT TERM 18 9077 - 9094 + F 88 -9.9 -3.87505 | opp_overlap 9077 9074 9058, overlap 9074 9068 TGAGTAGGATAACAA TGTCCAG TTAA CTGGACA TTGTTATCCTATAAT pf49 9132 - 9656 + | PF49 plasmid partition protein TERM 19 9872 - 9922 + F 100 -13.7 -5.0432 | opp_overlap 9870, overlap 9873 TCACGTTCATAAGGC CTTAGAGCTTAATTAAGGATTCT TTTTT AGAGTCTTTAATTAAGCTCTGAA TTTTATATTTTTATT TERM 20 9873 - 9921 + F 100 -17.2 -3.58932 | opp_overlap 9870, overlap 9872 CACGTTCATAAGGCC TTAGAGCTTAATTAAGGATTCT TTTTT AGAGTCTTTAATTAAGCTCTGA ATTTTATATTTTTAT vlp-c 11274 - 12344 + | vlp protein, gamma subfamily TERM 21 12394 - 12420 + F 81 -5.2 -5.20781 | overlap 12389 AAATTATAAATTAAA GATGCTAGGAAT TAA GTTCTTGGTATC TTTTATTTTGTAGTG vsp 12569 - 13282 + | vsp protein SEQUENCE gi|203283926|ref|NC_011229.1| Borrelia duttonii Ly, complete genome (length 931674) BDU_1 1378 - 524 - | antigen P35-like protein TERM 1 1436 - 1400 - R 75 -9.1 -3.28712 | opp_overlap 1400 1404 1410 1411, overlap 1404 1407 1430 TCTCCTTCTTTAGAA TTAATAATCATTATTAC TAA ATAGTAATGATTATTAA TTAATAATATATATC TERM 2 1400 - 1436 + r 85 -10.6 -3.27259 | opp_overlap 1400 1404 1407 1430, overlap 1404 1410 1411 TCTCCTTCTTTAGAA TTAATAATCATTATTA CTAAA TAGTAATGATTATTAA TTAATAATATATATC TERM 3 2067 - 2041 - R 75 -7.4 -4.04187 | opp_overlap 2041, overlap 2036 CACTATAAAATACAA GATACCAAAAGC TTC ACTCTTAGTATC TTCACTTTATGACTT vlp-c-1 3060 - 2113 - | vlp protein, gamma subfamily TERM 4 2149 - 2164 + g 70 -7.6 -3.4594 | ACCACCATTCTCAGA TGCTAC AGTA GTAGCA TTAGTATTAATTTTC TERM 5 2498 - 2508 + g 82 -5.4 -5.54192 | overlap 2490 2492 2490 ACTGCTTTAGCTGCA TCAG CTG CTGA TTTTTTTGCATTAGT TERM 6 3312 - 3335 + r 77 -8.4 -3.62762 | ATAATTTTACTTCTC TTACTTTATT ATTT AATAAAGTAA TTATAATTATTGATT vlp-c-2 4421 - 3342 - | vlp protein, gamma subfamily TERM 7 4675 - 4711 + r 74 -6.8 -4.2928 | opp_overlap 4675 TAATACACTACAAAA TTAAAGATACCAAGAA CTTAA TTCCTAGTATCTTTAA TTTATAATTTTTCTC TERM 8 4711 - 4675 - R 100 -11.9 -4.5477 | opp_overlap 4675 TAATACACTACAAAA TTAAAGATACCAAGAAC TTA ATTCCTAGTATCTTTAA TTTATAATTTTTCTC TERM 9 5968 - 5951 - R 90 -4.8 -5.95539 | opp_overlap 5951 CCGCAAATAAAAAAA GAGAGC TTTATT GCTCCC TTTCCTTTATCAATA vlp-a 8165 - 7068 - | vlp protein, alpha subfamily TERM 10 8384 - 8333 - H 74 -9.2 -3.07895 | gap 1, opp_overlap 8334 8346 8374, overlap 8346 CCCATGTCTAATACA CTACAAAATAAAAGATACCAAGAAC TTA ATTCCTAGTATC-TTTACTTTGTAA TTTTTTTCTCTTATT TERM 11 8372 - 8346 - H 93 -7.4 -5.20781 | opp_overlap 8334 8346, overlap 8333 CACTACAAAATAAAA GATACCAAGAAC TTA ATTCCTAGTATC TTTACTTTGTAATTT TERM 12 8374 - 8384 + H 83 -4 -5.86465 | opp_overlap 8333, overlap 8334 TAATTCCTAGTATCT TTAC TTT GTAA TTTTTTTCTCTTATT TERM 13 8733 - 8749 + H 83 -9.5 -3.72485 | TTAGCATCATTATTT TCAGCTA ACT TAGCTGA TTTACCATTATCTTT TERM 14 9696 - 9686 - H 73 -4 -5.40004 | CATCAAATGAAAAAA TCAT AAC ATGA ATATATCAAATTTAT TERM 15 10320 - 10283 - H 72 -8.1 -3.32579 | gap 1, opp_overlap 10283 TAACAAAATACCTAA CTATTATTTCTATA-TTC ACA GATCTATAGAAATAATAG TTTTCTATCTTGACT TERM 16 10283 - 10320 + H 86 -8.1 -4.68545 | gap 1, opp_overlap 10283 TAACAAAATACCTAA CTATTATTTCTATA-TTC ACA GATCTATAGAAATAATAG TTTTCTATCTTGACT BDU_7 12060 - 12656 + | hypothetical protein TERM 17 12727 - 12706 - T 78 -4.5 -5.31877 | overlap 12708 AGGTATTATAAAAAA GATAACTTT AATA AAAGTTAAC ATAAAATTTTTTCAA BDU_8 13868 - 12771 - | beta-N-acetylhexosaminidase, putative TERM 18 13484 - 13499 + gT 75 -3.4 -5.46129 | AACCAAGATATTTTT TTAATT TTTC AATTAA TTTTTTAGTTTGTTC BDU_9 15294 - 13801 - | hypothetical protein TERM 19 15036 - 15023 - GH 72 -3.1 -5.36364 | GTAAAAACATAAAAA TCACC TTCT GATGA GAATAAAAACTTTCT femD 15349 - 17139 + | phosphoglucomutase trsA 18268 - 17216 - | tryptophanyl-tRNA synthetase BDU_12 19356 - 18265 - | predicted permease TERM 20 19084 - 19074 - G 70 -5.4 -4.45544 | opp_overlap 19074, overlap 19082 19083 GTTGATCAATTAAAA CAGT AAC ACTG TAATATACAAAGCTA BDU_13 20327 - 19470 - | hypothetical protein TERM 21 20350 - 20338 - H 79 -3.5 -5.72622 | opp_overlap 20343 CTCATAAATAAAAAA TAAAT TTA ATTTA AGATTAACTTGTATT BDU_14 20447 - 21223 + | hypothetical protein TERM 22 21618 - 21603 - g 89 -6.2 -5.42198 | TCTCAAAAAACAAAA TCAAGA TAAA TCTTGA TAAAAAAATTTCAAA BDU_15 21227 - 22219 + | hypothetical protein TERM 23 22265 - 22304 + G 77 -5.3 -5.00616 | opp_overlap 22252 22266, overlap 22253 22252 22266 AATAAAAGTCATGAG ACTTTCTAGTTTTTT AAAAAATAAA AAAAAACTAGAAAGA TTTTTTACACAAAGA TERM 24 22266 - 22303 + G 76 -8.8 -3.60048 | opp_overlap 22252 22266, overlap 22253 22252 22265 ATAAAAGTCATGAGA CTTTCTAGTTTTTT AAAAAATAAA AAAAAACTAGAAAG ATTTTTTACACAAAG TERM 25 22303 - 22266 - g 71 -8.8 -2.86591 | opp_overlap 22253 22252 22266 22265, overlap 22252 ATAAAAGTCATGAGA CTTTCTAGTTTTTT AAAAAATAAA AAAAAACTAGAAAG ATTTTTTACACAAAG BDU_16 22212 - 22601 + | holo-acyl-carrier protein synthase TERM 26 23361 - 23335 - g 72 -3.6 -5.33026 | TAATTGAAATAAAAA CCCTTCTGTCTA AAA TAGCCGGAATGG GAAAATCATCAAAAG BDU_17 22605 - 23453 + | hypothetical protein hisT 23454 - 24191 + | pseudouridylate synthase I BDU_19 24184 - 24753 + | hypothetical protein priA 24746 - 26722 + | primosomal protein N udk 27339 - 26719 - | uridine kinase glpE 27721 - 27332 - | GlpE protein (GlpE) TERM 27 28610 - 28600 - g 73 -5.4 -4.68846 | ACCAATAAATTAAAA GTAG CAG CTAC ACTACTTGAAGGTAA BDU_23 27850 - 28815 + | hypothetical protein BDU_24 29792 - 28812 - | ribosomal large subunit pseudouridine synthase D BDU_25 30299 - 29793 - | hypothetical protein pfpB 31971 - 30307 - | pyrophosphate--fructose 6-phosphate 1-phosphotransferase,beta subunit queA 33099 - 32041 - | S-adenosylmethionine-tRNA ribosyltransferase-isomerase (queuine synthetase) ruvB 34105 - 33083 - | Holliday junction DNA helicase ruvA 34748 - 34158 - | Holliday junction DNA helicase BDU_30 35562 - 34831 - | hypothetical protein folD 36504 - 35563 - | methylenetetrahydrofolate dehydrogenase BDU_32 36614 - 37267 + | hypothetical protein BDU_33 37275 - 38306 + | hypothetical protein BDU_34 38723 - 38292 - | hypothetical protein lepB-1 39348 - 38713 - | signal peptidase I TERM 28 38766 - 38756 - G 76 -4 -5.5112 | overlap 38765 TTTAGCAATAAAAAA GATA AAA TATC AGCCTGTCCCACAGG TERM 29 39240 - 39228 - G 74 -4.9 -5.0925 | opp_overlap 39228 CTTGAAAAGTAAAAA TTTGT AAA ACAAA TTTTGTAACAAAATA TERM 30 39253 - 39241 - G 70 -4.9 -4.66535 | opp_overlap 39241 AATTTGTAAAACAAA TTTTG TAA CAAAA TAATTAGATAGCAAA leB-2 40329 - 39349 - | signal peptidase I BDU_37 40531 - 42003 + | hypothetical protein TERM 31 42440 - 42423 - g 77 -4.9 -5.25656 | AAAAGTATCAAAAAA GATCTCA GTCG TGAAATC AAACAATATAAATAA smpB 42006 - 42455 + | SsrA-binding protein BDU_39 43214 - 42612 - | hypothetical protein parC 45118 - 43235 - | DNA topoisomerase IV, A subunit TERM 32 43920 - 43932 + g 70 -6.3 -4.10007 | TCAAACATACTTATT TTCCT AAT AGGAA TTTTAAGCAAGTTCT parE 46914 - 45118 - | DNA topoisomerase IV, B subunit plsC 47678 - 46926 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase BDU_43 49146 - 47686 - | hypothetical protein BDU_44 50717 - 49209 - | hypothetical protein cheR-1 50906 - 51769 + | chemotaxis protein methyltransferase TERM 33 51775 - 51761 - T 73 -3.6 -5.29385 | AATTCAATGAAAAAA CAATCA TAA TGATTA AATAAATAAAAGAAT phoU 52487 - 51810 - | phosphate transport system regulatory protein BDU_47 53543 - 52494 - | hypothetical protein BDU_48 53926 - 53540 - | hypothetical protein BDU_49 56419 - 53954 - | P115 protein TERM 34 55212 - 55232 + g 78 -2.7 -5.86332 | opp_overlap 55203 55214, overlap 55203 55214 AATGTATCTTCAAAC AATTTTAAA GAA TTTAAAATG TTTTTTTTAAGTTGC TERM 35 55214 - 55230 + g 70 -5.3 -4.56715 | opp_overlap 55203 55214, overlap 55203 55212 TGTATCTTCAAACAA TTTTAAA GAA TTTAAAA TGTTTTTTTTAAGTT TERM 36 55725 - 55714 - G 71 -4.4 -4.88228 | opp_overlap 55714 AGTTAAGATTAAAAA GCTT CTTC AAGC TTAAATTTTTATCCA TERM 37 56620 - 56610 - g 82 -5.4 -5.50723 | TTACCAAAACAAAAA GAGA ATA TCTC TCAGCATTAATACTA rnhB 56477 - 57022 + | ribonuclease H BDU_51 57396 - 57103 - | hypothetical protein BDU_54 58128 - 58838 + | membrane protein BDU_55 58883 - 59578 + | hypothetical protein spoU 60209 - 59553 - | spoU protein TERM 38 59713 - 59696 - G 70 -6.3 -4.11503 | TTAAAGAATAAAAGA CTATAGC TACA GCTACAG AGAGATTATAACTTT TERM 39 60499 - 60533 + G 75 -8.6 -3.34344 | opp_overlap 60490 60509 60512, overlap 60511 60512 ACAAGATCCATACCA CGGAAAAGGACAAGCC AAT GGTTTGGCATTTTCTG TTAATTCAGACATCA ung 60290 - 60961 + | uracil DNA glycosylase BDU_58 61381 - 61019 - | preprotein translocase SecG subunit TERM 40 61223 - 61202 - G 70 -2.3 -5.54885 | AAGAGTAATAAAAAA TGCTGTAAT TTTT ATTGCAACA CTTGAAGATCTTGCC tpi 62151 - 61387 - | triosephosphate isomerase pgk 63331 - 62153 - | phosphoglycerate kinase TERM 41 63263 - 63241 - G 90 -10.7 -3.23692 | TAGTATCATCAGTAA TGTTCCCTT CTCGT AAGGGAACA TTAAAATCACATCTA gap 64368 - 63361 - | glyceraldehyde 3-phosphate dehydrogenase BDU_62 66426 - 64441 - | hypothetical protein tlyC 67202 - 66423 - | hemolysin TERM 42 67203 - 67191 - G 71 -2.7 -5.46698 | overlap 67192 TTTAAAATTAAAAAA CTTGA ACA TCAAA ATACCCTTCTGGTTT BDU_64 67645 - 67199 - | hypothetical protein TERM 43 67378 - 67402 + g 70 -6.6 -3.92414 | gap 1, opp_overlap 67376, overlap 67376 TAAACTCCAAATATT CAAGG-GATAT GATA ATATCTCCTTG TATTTTATGATTTAT trxA 68085 - 67732 - | thioredoxin BDU_66 68163 - 68882 + | hypothetical protein TERM 44 68930 - 68876 - T 74 -4.9 -4.94262 | gap 2, opp_overlap 68889 68891, overlap 68889 TACATCAAAAATAAA TGATTAATAATAATATCTTTATACATT GAA AATGTATAAAGATAT-ATTAA-ACTCA AAAATAAAATTTTGT TERM 45 68889 - 68919 + T 100 -14.4 -3.05844 | opp_overlap 68889 68876, overlap 68891 AATGATTAATAATAA TATCTTTATACATT GAA AATGTATAAAGATA TATTAAACTCAAAAA TERM 46 68919 - 68889 - T 100 -14.4 -4.01047 | opp_overlap 68889 68891, overlap 68876 AATGATTAATAATAA TATCTTTATACATT GAA AATGTATAAAGATA TATTAAACTCAAAAA TERM 47 68891 - 68917 + T 100 -12.6 -3.08813 | opp_overlap 68889 68876, overlap 68889 TGATTAATAATAATA TCTTTATACATT GAA AATGTATAAAGA TATATTAAACTCAAA BDU_67 70011 - 68956 - | hypothetical protein TERM 48 69014 - 69000 - G 70 -6.4 -4.24745 | opp_overlap 69000 TATCATGAATATAAA GCTCAA CTG TCGAGC CTTTTACTGCCTCAT fmt 70968 - 70039 - | methionyl-tRNA formyltransferase def 71462 - 70965 - | polypeptide deformylase BDU_70 72185 - 71490 - | hypothetical protein BDU_71 73960 - 72182 - | peptidase, putative TERM 49 73471 - 73492 + g 70 -6.7 -3.96156 | overlap 73469 TTCTTTTGTCATTTT TTTGAGCTT CCTT AAGTTCAAA TATTTTATTACCTGT TERM 50 73982 - 73998 + H 71 -6.7 -3.9941 | AAGCTCCTTAGGATT TAAAAAG TAA CTTTTTA TTTAATTATAACAAA BDU_72 74084 - 74977 + | hypothetical protein TERM 51 75507 - 75489 - g 75 -7.6 -3.91801 | overlap 75486 AAAACATTAGAAGAA TTTTTTGA AAT TCAAAAAA AAATTATGTTACTTG BDU_73 74991 - 76229 + | aminopeptidase II BDU_74 76254 - 76727 + | hypothetical protein TERM 52 77387 - 77371 - g 71 -4.5 -4.88258 | AAAATTACAACAAAA TATATCT AAA AGACATA GGATTTACAGTATTA TERM 53 77829 - 77843 + G 70 -5.8 -4.38712 | CCAAATATTGTAGGT TATATG TAT CATATA TTTTATCAAAATGAA TERM 54 78108 - 78092 - g 100 -4.5 -6.15536 | opp_overlap 78092 AATTAATAAAAAAAA TGAACAA ACA TTATTCA CTCTTTCATTGCCAT BDU_75 76755 - 78221 + | hypothetical protein TERM 55 79180 - 79170 - g 74 -4 -5.23765 | CAAATAAGATAAAAA TAGA TAA TCTA AATGTACCTATCACA TERM 56 79722 - 79732 + G 91 -4 -6.02919 | TGGCAATATTTTTTA CATT TTT AATG TTTTTTTATTTCTCA BDU_76 78221 - 80536 + | hypothetical protein TERM 57 80633 - 80617 - g 71 -4.5 -4.97957 | GATATAAGAATAAAA GATAATA AAA CATTATC AAAAAAATATCTAAC TERM 58 80705 - 80717 + G 70 -4.9 -4.63952 | ATATTTATAAACTAT TTGTA GAA TACAA TTTATTATTTATAAT BDU_77 80533 - 81105 + | hypothetical protein prfB 81139 - 82182 + | peptide chain release factor RF-2 TERM 59 82224 - 82248 + G 70 -8.7 -2.69195 | opp_overlap 82226 82228, overlap 82223 82226 ACGACTAAACTAGCA TATACTCAAAG TAA CATTGAGTATA GATTTTCTTATATCA BDU_79 82164 - 83573 + | hypothetical protein ftsY 83625 - 84470 + | signal recognition particle-docking protein FtsY BDU_81 84467 - 85522 + | hypothetical protein TERM 60 86442 - 86425 - g 72 -3.5 -5.36965 | overlap 86395 86428 TAAGAGCACAAAAAA TTAGAAA AGTT TTCCTAA TTCATTCAGTAGTAA BDU_82 85509 - 86759 + | lipoprotein releasing system, permease protein, putative BDU_83 86760 - 87449 + | ABC transporter, ATP-binding protein TERM 61 87982 - 87969 - g 70 -3.1 -5.34055 | ATAAATATCAAAAAA TACTC CCCA GAGCA CAAAAATTTACCATA BDU_84 87446 - 88696 + | ABC transporter, permease protein BDU_85 90003 - 88717 - | hypothetical protein BDU_86 90313 - 89996 - | hypothetical protein TERM 62 90735 - 90725 - g 74 -4 -5.28561 | opp_overlap 90725, overlap 90719 90726 AAGAGACAAGAAAAA TTGT TAA ACAA TTTATCAATGCAGAA TERM 63 91310 - 91293 - g 71 -2.8 -5.38047 | overlap 91300 91301 TATTTATATAAAAAA TGAAAA ACTTGA TTTTCA AACTATCAATTCCCC nifS 90478 - 91746 + | nifS protein TERM 64 91745 - 91727 - f 76 -4 -5.47218 | opp_overlap 91730, overlap 91739 CTTCACTTAAAAAAA CAATAAAA GAA TTTTATTA AATAAACTTACAAAC BDU_88 91892 - 92287 + | hypothetical protein TERM 65 92567 - 92548 - gT 79 -9.4 -3.20063 | overlap 92552 AAAAAAATTGGAACA GCAATTGA TCTC TCAATTGC AACTAGCATTATAAG TERM 66 93636 - 93618 - gT 71 -4.6 -4.86033 | AAATGTTCATAAAAA TTCTGATC TCA AACCAGAA CACATTGCAATATTT BDU_89 92242 - 93849 + | magnesium chelatase family protein TERM 67 93867 - 93854 - T 100 -9.5 -5.68489 | TAGAAGAATAAAAAA GCCCC AATT GGGGC AAAATTAAAATTCTA ldh 94834 - 93872 - | L-lactate dehydrogenase lepA 96679 - 95012 - | GTP-binding membrane protein TERM 68 95816 - 95849 + g 95 -11.9 -3.77666 | opp_overlap 95814 ATGGCCAAGAGCAGC TGATGCATCTTTTTC AAAA GTAAGAGATGCATCA TTTAGCTTAAGTCTA BDU_92 97862 - 96858 - | hypothetical protein TERM 69 97419 - 97393 - G 71 -8.2 -3.21593 | overlap 97391 97395 97414 TATTTTTGCACAATA TAGTGATAATTA TAA TAATCATCACCA CGTGAAAATTTACTT TERM 70 97417 - 97395 - G 74 -8.6 -3.17146 | overlap 97393 97391 97414 TTTTTGCACAATATA GTGATAATTA TAA TAATCATCAC CACGTGAAAATTTAC TERM 71 97885 - 97845 - G 100 -13.7 -3.97602 | opp_overlap 97849 97854, overlap 97847 97854 TAACATATTCATAAA TATATTAAATTTTCTCACA AAT TGCGAGAAAATTTAATATC TGAATATTTGAGTTT TERM 72 97883 - 97847 - G 100 -16.3 -3.5697 | opp_overlap 97849 97854, overlap 97845 97854 ACATATTCATAAATA TATTAAATTTTCTCACA AAT TGCGAGAAAATTTAATA TCTGAATATTTGAGT TERM 73 97849 - 97881 + g 95 -12.3 -2.96638 | opp_overlap 97847 97845 97854, overlap 97854 ATATTCATAAATATA TTAAATTTTCTCACA AAT TGCGAGAAAATTTAA TATCTGAATATTTGA TERM 74 97854 - 97876 + g 75 -7.8 -3.89212 | opp_overlap 97847 97845 97854, overlap 97849 CATAAATATATTAAA TTTTCTCACA AAT TGCGAGAAAA TTTAATATCTGAATA TERM 75 97876 - 97854 - G 91 -10 -3.98915 | opp_overlap 97854 97849, overlap 97847 97845 CATAAATATATTAAA TTTTCTCACA AAT TGCGAGAAAA TTTAATATCTGAATA atpK 98333 - 97899 - | V-type ATPase, subunit K TERM 76 97987 - 97973 - G 81 -7.2 -4.67641 | opp_overlap 97975, overlap 97986 ATCCCAAAACTAAAA GATTTG TTG CAAATC CCTTGCCAGTCTCAG atpI 100188 - 98353 - | V-type ATPase, subunit I atpD 100789 - 100193 - | V-type ATPase, subunit D atpB 102099 - 100792 - | V-type ATPase, subunit B TERM 77 101127 - 101114 - G 73 -8.1 -3.36569 | opp_overlap 101113, overlap 101112 TTAAGTCTTGAAAGA GAGCC AAAA GGCTC AATTCTGCCTCTCCT atpA 103833 - 102103 - | V-type ATPase, subunit A BDU_98 104389 - 103844 - | hypothetical protein atpE 104995 - 104399 - | V-type ATPase, subunit E BDU_100 105497 - 105102 - | hypothetical protein mutS_1 107858 - 105498 - | DNA mismatch repair protein MutS TERM 78 106611 - 106627 + gr 71 -8.1 -3.1634 | opp_overlap 106611 106610 106608 AAATTCATCAAATAT CAAAAGA CTA TCTTTTG TTGCATGCTTTAAAA TERM 79 107785 - 107765 - GR 80 -9.1 -3.61103 | TAACCGTATCTGAAA CAGTTACAT AAG ATGCAACTG AAGATAATATTTGAT TERM 80 107796 - 107809 + gr 71 -3.9 -5.04987 | opp_overlap 107793 AACTGAAGATAATAT TTGAT AAAA ATCAA TTTTTTCCAAATATT BDU_102 108747 - 107806 - | hypothetical protein murI 109508 - 108744 - | glutamate racemase asnS 109627 - 111012 + | asparaginyl-tRNA synthetase TERM 81 111028 - 110990 - f 100 -14.2 -3.63991 | opp_overlap 110999, overlap 110991 110999 TACCATTTCCAAGAA CTCCGAAAACTCTTCATT TCT AATAAAGAGTTTTCGAAA GGAGAAAAACATTGC TERM 82 111027 - 110991 - f 100 -15.5 -2.78073 | opp_overlap 110999, overlap 110990 110999 ACCATTTCCAAGAAC TCCGAAAACTCTTCATT TCT AATAAAGAGTTTTCGAA AGGAGAAAAACATTG TERM 83 111019 - 110999 - f 75 -7.7 -4.16921 | opp_overlap 110999, overlap 110991 110990 CAAGAACTCCGAAAA CTCTTCATT TCT AATAAAGAG TTTTCGAAAGGAGAA BDU_105 111040 - 111588 + | hypothetical protein TERM 84 111580 - 111596 + T 70 -2.3 -5.52384 | opp_overlap 111580 111591 CTAGAATATATTAAG CTTGAAT AGA ATTAAAG TTTTTTTGATAAAAA TERM 85 111617 - 111591 - T 79 -8.3 -3.67498 | opp_overlap 111580 111596, overlap 111580 111596 TAAGCTTGAATAGAA TTAAAGTTTTT TTGAT AAAAACTTTAA AATATTCAATAATTC BDU_106 112181 - 111591 - | hypothetical protein TERM 86 112480 - 112506 + r 78 -9.6 -3.29144 | opp_overlap 112467 112480 AATTTAATGCCTAAA GGCTTAAAGA ATTAACA TCTTTAAGCC TTATACAAAAAATAA TERM 87 112506 - 112480 - R 82 -9.6 -3.61536 | opp_overlap 112480, overlap 112467 AATTTAATGCCTAAA GGCTTAAAGA ATTAACA TCTTTAAGCC TTATACAAAAAATAA htrA 113988 - 112531 - | periplasmic serine protease DO map 114781 - 114029 - | methionine aminopeptidase BDU_109 116441 - 114786 - | hypothetical protein nusB 116868 - 116428 - | N-utilization substance protein B BDU_111 117897 - 116887 - | basic membrane protein fadA 119181 - 117988 - | acetyl-CoA C-acetyltransferase BDU_113 119372 - 120727 + | hypothetical protein dnaB 122161 - 120767 - | replicative DNA helicase TERM 88 121185 - 121174 - G 70 -3 -5.2204 | TATAATCAACAAAAA GTAT ATCT ATAC CTGAAAATCTTTTAA rplI 122674 - 122180 - | 50S ribosomal protein L9 rpsR 122978 - 122688 - | 30S ribosomal protein S18 ssb 123431 - 122991 - | single-stranded DNA-binding protein rpsF 123847 - 123443 - | 30S ribosomal protein S6 malX 126235 - 124529 - | PTS system, maltose and glucose-specific IIBC component yplQ 126437 - 127123 + | hemolysin III BDU_121 128446 - 127166 - | zinc protease, putative cdsA 129428 - 128463 - | phosphatidate cytidylyltransferase uppS 130008 - 129316 - | undecaprenyl diphosphate synthase frr 130567 - 130013 - | ribosome releasing factor tsf 131441 - 130605 - | translation elongation factor EF-TS TERM 89 130661 - 130675 + g 77 -2.9 -5.63517 | TACTTAAAATCAACT TAGAA ACCTC TTCTA TTTTTTCTTTAACAG rpsB 132227 - 131463 - | 30S ribosomal protein S2 maf 132862 - 132263 - | maf protein BDU_128 133130 - 132852 - | hypothetical protein BDU_129 133818 - 133144 - | hypothetical protein TERM 90 133943 - 133959 + r 70 -5.2 -4.62302 | ACAAATCAAATTATT TAAGCT GAAAA AGCTTA TTTTTAGCAATATTA BDU_130 134540 - 133938 - | hypothetical protein rpsA 136200 - 134533 - | 30S ribosomal protein S1 cmk 136864 - 136208 - | cytidylate kinase BDU_133 137607 - 136861 - | pseudouridylate synthase BDU_134 138352 - 137579 - | hypothetical protein TERM 91 137989 - 137971 - GR 73 -9 -2.76384 | opp_overlap 137971, overlap 137970 137968 GTAAAAAGACAACAT TTTCCTTT AAA AAAGGAAA TTTAGATATATCTAA TERM 92 137971 - 137989 + gr 82 -9 -3.75535 | opp_overlap 137971 137970 137968 GTAAAAAGACAACAT TTTCCTTT AAA AAAGGAAA TTTAGATATATCTAA recA 139452 - 138361 - | recA protein greA 142165 - 139463 - | transcription elongation factor EF TERM 93 139793 - 139811 + g 100 -10.4 -5.10933 | CTGTTGTCTCTCTTT TGCAGAAT GAT ATTCTGCA TTTTCTTTTAAATCA TERM 94 140446 - 140428 - G 91 -8.2 -5.01845 | CATAACAAGGAAAAA GCTGCTTA TAA TAAGCAAC CCAATCAACCAATTC TERM 95 141249 - 141237 - G 71 -4.1 -5.02323 | TGATGATAAACAAAA TTGCC TTT AGCAA AAAACAAATATTTTT TERM 96 141682 - 141657 - G 71 -2.7 -5.40072 | opp_overlap 141659, overlap 141659 141661 141681 GCCTTTCTAAAAAAA TATATTGATTT TTGC AAATCAACATT CTCATAATGAGTAGC BDU_137 143145 - 142201 - | hypothetical protein BDU_138 143332 - 144477 + | hypothetical protein hisS 145887 - 144517 - | histidyl-tRNA synthetase pbp-1 146027 - 147907 + | penicillin-binding protein BDU_141 149798 - 147909 - | long-chain-fatty-acid CoA ligase TERM 97 148722 - 148735 + g 71 -2.5 -5.47218 | AACAAAATTATTGCC TAAAA CTTT TTTTA TTTTTTTAAATACAA TERM 98 149128 - 149116 - G 71 -7.7 -3.51708 | GACCTTTGAAATGAA TGCCA AAT TGGCA AAATACACATAAATA BDU_142 150307 - 150014 - | hypothetical protein acrB 153559 - 150320 - | acriflavine resistance protein TERM 99 150488 - 150461 - G 90 -5.8 -5.56264 | opp_overlap 150464 150467, overlap 150464 150483 TTTAAAGACAAAAAA GAAGAATTTTAT CAAA ATAAAATTCTTT ATAGAAAACTTAGAA TERM 100 150464 - 150485 + g 73 -7.5 -3.86822 | opp_overlap 150461 150464 150483, overlap 150467 AAAGACAAAAAAGAA GAATTTTAT CAAA ATAAAATTC TTTATAGAAAACTTA TERM 101 150485 - 150464 - G 88 -7.5 -4.8277 | opp_overlap 150464 150467, overlap 150461 150483 AAAGACAAAAAAGAA GAATTTTAT CAAA ATAAAATTC TTTATAGAAAACTTA TERM 102 150518 - 150507 - G 71 -4.4 -4.97402 | GAAAACTTAGAAAAA GCTT CAAA AAGC ATAGGAATAAAAAGC TERM 103 153149 - 153131 - G 71 -2.5 -5.47431 | TGAATACATAAAAAA TGATATT ACTGG AATACCA TCTAAACGATCTCTA mtrC 154441 - 153563 - | membrane fusion protein BDU_145 155973 - 154549 - | hypothetical protein TERM 104 155857 - 155845 - GH 73 -3.5 -5.27476 | opp_overlap 155845 155856 TTTAATAAAATAAAA TAAAA TAT TTTTA TTAATAATTAATATA hlyA 155906 - 156208 + | alpha-hemolysin proX 157093 - 156197 - | glycine betaine/L-proline transport system substrate-binding protein proW 158029 - 157130 - | glycine betaine/L-proline transport system permease protein proV 159154 - 158036 - | glycine betaine/L-proline transport system ATP-binding protein TERM 105 158286 - 158261 - G 95 -10.7 -3.98762 | overlap 158280 158283 AATGATAACATTAAA TTGATCATTAT ATCC ATAATGATCAA AATCAACTTTGATAA TERM 106 158442 - 158430 - G 72 -6.3 -4.37886 | opp_overlap 158429 CCATCTCTCATAAAA GCAAT TCT ATTGC CTAATTTAAAAGCCT TERM 107 159264 - 159241 - R 100 -9.7 -5.42975 | opp_overlap 159244 TGACACAAATAAAAA TAAGGGTCT TCTAAC AGACCCTTA TTAAAAAATCAAATT flaB 160286 - 159279 - | flagellar filament 41 kDa core protein TERM 108 159365 - 159379 + g 72 -7.2 -3.91027 | overlap 159370 TCAAAATACTGTTTG TTGTAG ATG CTACAA TTTCATCTGTCATTG TERM 109 160330 - 160347 + r 82 -8.5 -3.90316 | TAATTTTGATGTTTT CGACAAA TCCA TTTGTCG TCTTTTTAAAAGGAT TERM 110 160398 - 160384 - R 80 -2.2 -6.04419 | AAAACAAGAAAAAAA TAAATA CAA TATTCA TTTAAATTAAATTTG fliD 162414 - 160414 - | flagellar hook-associated protein 2 TERM 111 162515 - 162504 - H 72 -3 -5.30348 | AGCCAATAATAAAAA TCTA ATTT TAGA TATAAATAACAAATA TERM 112 162557 - 162525 - H 83 -8.7 -4.18674 | opp_overlap 162529 162532 162554, overlap 162529 TTTAGATATAAATAA CAAATAAGTATCTTT AAA AAAGATCCTTATTTA TAGTAAAATTTAAGT TERM 113 162553 - 162529 - H 81 -7.3 -4.65458 | opp_overlap 162529 162532, overlap 162525 GATATAAATAACAAA TAAGTATCTTT AAA AAAGATCCTTA TTTATAGTAAAATTT TERM 114 162529 - 162553 + H 74 -7.3 -3.98236 | opp_overlap 162529 162525, overlap 162532 GATATAAATAACAAA TAAGTATCTTT AAA AAAGATCCTTA TTTATAGTAAAATTT nagA 162589 - 163794 + | N-acetylglucosamine-6-phosphate deacetylase nagB 163794 - 164630 + | glucosamine-6-phosphate isomerase sodA 165397 - 164786 - | superoxide dismutase secA 168121 - 165413 - | preprotein translocase SecA subunit TERM 115 167951 - 167962 + g 70 -3 -5.20783 | CTTACCACTCTGAAG TTCA TTTT TGAA TTTTTCTGTTTCCCT TERM 116 168615 - 168597 - g 75 -7.6 -4.05747 | opp_overlap 168597 CATACTCTACACAAA TCTTTATT CTA AATAAAGA TTCATCTGTAGCAAT TERM 117 169027 - 169014 - g 77 -3.1 -5.58051 | AAATAAAAAACAAAA TTACG CTAC CGCAA AATTTATTAGATGAT TERM 118 169103 - 169089 - g 75 -3.6 -5.55855 | TTCAAAAAAATAAAA TAATAG CAT CTACTA ATATGAAAAATTTAT BDU_156 168173 - 169306 + | hypothetical protein BDU_157 169328 - 169753 + | hypothetical protein BDU_158 169757 - 170173 + | hypothetical protein TERM 119 170939 - 170925 - g 71 -8.6 -2.80922 | opp_overlap 170925, overlap 170922 170920 AAAAATTTAACATGA TAAGGC CAG GCCTTA TTTTATACGGATATC TERM 120 170925 - 170939 + G 83 -8.6 -4.39426 | opp_overlap 170925 170922 170920 AAAAATTTAACATGA TAAGGC CAG GCCTTA TTTTATACGGATATC TERM 121 171173 - 171154 - g 73 -5.2 -4.75356 | AAATACATCTAAAAA TTTTTATT GCAT AATAAAAA ATAAAAAATGTTTTA TERM 122 171188 - 171175 - g 71 -2.5 -5.55769 | TTGCATAATAAAAAA TAAAA AATG TTTTA TTAGAGGAAAAATAT alr 170267 - 171379 + | alanine racemase BDU_160 173056 - 171371 - | hypothetical protein BDU_161 173040 - 173207 + | hypothetical protein BDU_162 174969 - 173212 - | hypothetical protein TERM 123 173786 - 173808 + g 70 -7.8 -3.41291 | overlap 173785 ATCTTCTCAAGACCC TCTTCTGTAA AAA TAACAGAAGA ATTTTTACCATTATT BDU_163 176022 - 175045 - | Na+/Ca+ exchange protein, putative TERM 124 175728 - 175714 - G 72 -3.6 -5.20781 | overlap 175715 CATCATAAAAGAAAA CTTAAG TCT CTTAAA ATCTGTTTTTATTTT BDU_164 177912 - 176047 - | hypothetical protein TERM 125 176740 - 176753 + g 78 -2.4 -5.7946 | TTTTACAACATTACC CCAA GGACGA TTGG TTTTTTTATTCCAAA malQ 179456 - 177972 - | 4-alpha-glucanotransferase TERM 126 180364 - 180329 - g 76 -7 -4.41633 | CATCTGGAAAAATAA TCTCCATTGAATTACC AAAT GATAACACAATAGAGA ATGAAATTAAGGAAT tpn50 179614 - 180771 + | outer membrane protein BDU_167 181158 - 180775 - | DnaK suppressor TERM 127 180924 - 180942 + g 73 -5.4 -4.67697 | opp_overlap 180924 AAATCCGATAAAGAG CTTGATTT ATT AAATTAAG TTTCTTCTTTTCAAC infA 181328 - 181549 + | translation initiation factor IF-1 TERM 128 181568 - 181550 - T 76 -6.2 -4.61353 | overlap 181547 TACAGAGAAAAATAA TTTTTTAT GTA ATAAAAAA CTGAAATTCAAAAAT BDU_169 183636 - 181594 - | hypothetical protein TERM 129 182476 - 182494 + gT 78 -2.5 -5.79526 | ATTAAAATCTAATAA TAATTCT TGATT AGAGTTA TTTTTTTTAAACTCT BDU_170 184172 - 183585 - | hypothetical protein BDU_171 185143 - 184154 - | hypothetical protein BDU_172 186165 - 185140 - | hypothetical protein BDU_173 187036 - 186128 - | hypothetical protein TERM 130 186206 - 186174 - GR 75 -5.7 -4.67038 | opp_overlap 186175, overlap 186175 186176 186199 186202 TCTTCAAAATTAAAA GCCGCTTTTTTTAAA TCA TTTAAAACAAGCGAT AAATTATCCCCCGAT TERM 131 186205 - 186175 - GR 79 -9.2 -3.395 | opp_overlap 186175, overlap 186174 186176 186199 186202 CTTCAAAATTAAAAG CCGCTTTTTTTAAA TCA TTTAAAACAAGCGA TAAATTATCCCCCGA TERM 132 186204 - 186176 - GR 82 -10.5 -2.62977 | opp_overlap 186175, overlap 186175 186174 186199 186202 TTCAAAATTAAAAGC CGCTTTTTTTAAA TCA TTTAAAACAAGCG ATAAATTATCCCCCG BDU_174 187920 - 187033 - | hypothetical protein moxR 188920 - 187928 - | methanol dehydrogenase regulator gidB 189622 - 188990 - | glucose inhibited division protein B TERM 133 189030 - 189052 + g 80 -5.7 -5.06089 | AGGAAATATCTCTCT TTATCAGAA ATCAA TTCTGATGA TTTTATTTCTACTTT gidA 191499 - 189619 - | glucose inhibited division protein A TERM 134 191126 - 191143 + g 71 -7.1 -3.8397 | opp_overlap 191126 AAATCACTAACAGTA TCTTGAA AAAG TTCAAGA TTATTCTGCATCTCT thdF 192878 - 191484 - | thiophene and furan oxidation protein BDU_179 193017 - 193511 + | putative flagellar protein TERM 135 194336 - 194320 - g 74 -8.1 -3.52113 | overlap 194318 ATGGTCCCACAAAGA CAAAATG GAA CATTTTG TGGAATAATCGAGAA TERM 136 195012 - 194999 - g 77 -5.3 -5.00884 | ATCTCCTCTAAAAAA TCCAT CAGC ATGGA TTAGAATATCTAAAA flgK 193530 - 195413 + | flagellar hook-associated protein TERM 137 195508 - 195498 - g 71 -4 -5.16681 | opp_overlap 195498 GTAAAAATAACAAAA CTTT TAG AAAG TTTATACCAAGGTGG TERM 138 196140 - 196120 - g 79 -9.7 -3.3062 | opp_overlap 196117 TTGAAATAGTATTAA CAGCAGGAG ATA CTGCTGCTG ACATTATCGCCAAAA flgL 195417 - 196691 + | flagellar hook-associated protein 3 BDU_182 196693 - 197085 + | hypothetical protein TERM 139 197158 - 197133 - g 70 -8.5 -2.66723 | overlap 197132 AGCATTAAAATAGAC TCTAATATCGA AATT TCAATATTAGA AATAAAAAAAGATAG csrA 197088 - 197324 + | carbon storage regulator BDU_184 197998 - 197309 - | hypothetical protein BDU_185 198380 - 197952 - | hypothetical protein BDU_186 198676 - 198377 - | hypothetical protein rplT 199188 - 198841 - | 50S ribosomal protein L20 TERM 140 199114 - 199127 + g 75 -5.3 -4.90525 | overlap 199116 ACTTTTTTTAGTACC CCAAA AACC TTTGG TTTTCTTTAAAATTC rpmI 199406 - 199209 - | 50S ribosomal protein L35 infC 199989 - 199429 - | translation initiation factor IF-3 TERM 141 200276 - 200293 + G 77 -2.1 -5.82036 | gap 1, opp_overlap 200278, overlap 200277 200278 CATATGCAATGTCAA TA-TTGCT TGC AGCAACTA TTTTTTCTTTATTAT BDU_190 200167 - 200829 + | hypothetical protein BDU_191 200829 - 201575 + | hypothetical protein BDU_192 202466 - 201669 - | Tatd, Mg-dependent DNase BDU_193 203605 - 202463 - | hypothetical protein prfA 203904 - 204983 + | peptide chain release factor A BDU_195 204994 - 205827 + | HemK family methylase TERM 142 205935 - 205925 - g 78 -2.6 -5.83822 | GACATTCAAAAAAAA TTAA TAT TTAA ATCTCTTGAAATATC TERM 143 206354 - 206334 - g 81 -8.4 -4.22375 | opp_overlap 206333, overlap 206331 ATCGAAGAGAAAGAA TTGCAAGA GATTG TCTTGCAA CTTACGTACCAATTG TERM 144 207365 - 207354 - g 82 -4.4 -5.74288 | opp_overlap 207354 ATAAAGAACAAAAAA GACT ATTT AGTC TATTTAAATCTCTAA spoT 205811 - 207814 + | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase BDU_197 207804 - 210047 + | hypothetical protein ddlA 211138 - 210044 - | D-alanine--D-alanine ligase murE 212669 - 211143 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate TERM 145 211276 - 211289 + g 73 -5.3 -4.74103 | AAATCGTCACTACAT GCAAT ATTT ATTGC TTTTTCAATTGCACA TERM 146 212083 - 212060 - G 73 -7.5 -3.82486 | opp_overlap 212053, overlap 212053 212051 ATTCAATATCAAGAA GCCTTGATG TCCTAT CATCAAGAC CATGAGAAGTTGATT BDU_201 212975 - 214216 + | hemolysin hflK 214341 - 215273 + | Lambda CII stability-governing protein hflC 215274 - 216245 + | Lambda CII stability-governing protein TERM 147 217087 - 217069 - g 86 -6 -5.42862 | ACATTTTTAAAAAAA GGAAATGT TTC ACATATCC CAGTTATAAGCAATT TERM 148 217435 - 217379 - g 82 -6.4 -5.08824 | gap 2, opp_overlap 217384, overlap 217381 217388 217389 217429 TCTCTATTCAAAAAA TATTATCAACGATCTATGATTATTTTGA TTT TCAAAA-AATCATAGATCAA-GATAATC TCCATCATCAAACAA TERM 149 217433 - 217381 - g 86 -9 -4.17608 | gap 2, opp_overlap 217384, overlap 217379 217388 217389 217429 TCTATTCAAAAAATA TTATCAACGATCTATGATTATTTTGA TTT TCAAAA-AATCATAGATCAA-GATAA TCTCCATCATCAAAC TERM 150 217427 - 217388 - g 100 -12.6 -3.35318 | gap 1, opp_overlap 217384, overlap 217381 217379 217389 AAAAAATATTATCAA CGATCTATGATTATTTTGA TTT TCAAAA-AATCATAGATCA AGATAATCTCCATCA TERM 151 217426 - 217389 - g 100 -13.9 -2.59564 | gap 1, opp_overlap 217384, overlap 217388 217381 217379 AAAAATATTATCAAC GATCTATGATTATTTTGA TTT TCAAAA-AATCATAGATC AAGATAATCTCCATC TERM 152 217838 - 217801 - g 80 -5.8 -5.06505 | opp_overlap 217802 217804, overlap 217795 217791 217804 AACGATACAGAAAAA CAACTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAGTAT TAATATTTCTAAAAA TERM 153 217802 - 217837 + G 82 -9.3 -3.50335 | opp_overlap 217795 217791 217801 217804, overlap 217804 ACGATACAGAAAAAC AACTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAGTA TTAATATTTCTAAAA TERM 154 217835 - 217804 - g 100 -11.9 -4.61353 | opp_overlap 217802 217804, overlap 217795 217791 217801 GATACAGAAAAACAA CTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAG TATTAATATTTCTAA TERM 155 217804 - 217835 + G 95 -11.9 -3.32024 | opp_overlap 217795 217791 217804 217801, overlap 217802 GATACAGAAAAACAA CTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAG TATTAATATTTCTAA TERM 156 217968 - 217957 - g 85 -3 -6.01369 | opp_overlap 217957 GAAACAACAAAAAAA TTCA CACA TGAA CTTATCAGAATTTTT BDU_205 216943 - 218481 + | hypothetical protein BDU_206 219115 - 218486 - | N6-adenine-specific methylase TERM 157 218524 - 218514 - G 76 -4 -5.47399 | TTAACTTCAAAAAAA TCAA GTC TTGA GCCTCCATATTTTCT TERM 158 218733 - 218715 - G 74 -6.8 -4.32919 | opp_overlap 218715 AAATCATAAAAAAGA TCTCTCTT TGC AAGAAAGA ATTCTGCTTTTGTAA gtaB 219119 - 219949 + | UTP--glucose-1-phosphate uridylyltransferase TERM 159 220239 - 220225 - g 81 -2.2 -5.99154 | overlap 220212 CATTAAAGAAAAAAA TTTACT TCA AATAAA AAAAGAAACTAATCT TERM 160 220260 - 220248 - g 77 -4.9 -5.36181 | AAATAAAAAAAGAAA CTAAT CTT ATTAG CAAAAGACCTGGAAT TERM 161 220640 - 220627 - g 71 -2.5 -5.4756 | AATTTTAACAAAAAA TTATA AATA TATAA TAGATGAAGTTTTAA TERM 162 220885 - 220862 - g 74 -6.8 -4.32951 | overlap 220883 AAACAATATCTAAAA TGGTTCTTTA AAGA TAAAGTACCA CATGAATGGAAAGAT TERM 163 221235 - 221221 - g 90 -5.8 -5.61881 | overlap 221206 TTTCAAAAATAAAAA TTTTGA AAT TCAAAA TCAAATATTTGTATA BDU_208 219950 - 221665 + | hypothetical protein BDU_209 221715 - 223910 + | hypothetical protein TERM 164 224991 - 224963 - g 78 -7.5 -4.39989 | opp_overlap 224968, overlap 224968 224982 224985 ACCAAACTAGTAAAA GACAAGCTCCTTT GGA AAAGGAGCTTTTA AAACAAAAACTTCCT TERM 165 224968 - 224986 + G 100 -11.8 -4.07568 | opp_overlap 224968 224963 224982 224985 ACTAGTAAAAGACAA GCTCCTTT GGA AAAGGAGC TTTTAAAACAAAAAC TERM 166 224986 - 224968 - g 100 -11.8 -4.00084 | opp_overlap 224968, overlap 224963 224982 224985 ACTAGTAAAAGACAA GCTCCTTT GGA AAAGGAGC TTTTAAAACAAAAAC TERM 167 225013 - 225001 - g 76 -4.1 -5.45802 | overlap 224982 CTTTTAAAACAAAAA CTTCC TAT AGAAG AAATTCCACCCATAA lmp1 223903 - 226248 + | surface-located membrane protein 1 TERM 168 227436 - 227424 - g 70 -4.9 -4.67563 | GAAGATAAAGTAAAA TTTGA AGG TCAAA TACCACAAAAATACA mutL 226245 - 228080 + | DNA mismatch repair protein BDU_212 228101 - 229141 + | hypothetical protein TERM 169 229240 - 229224 - T 70 -8.7 -2.62396 | overlap 229237 CAGTTGGTTAGAGCA CCCGACT CAT AATCGGG TGGTCCCAGGTTCAA BDU_214 229926 - 229273 - | hypothetical protein TERM 170 229906 - 229894 - G 84 -3.5 -5.89827 | overlap 229904 AATTATTAAAAAAAA TAATA CTA TATTA AACTTTAACTCTCTC efp 230482 - 229904 - | elongation factor EF-P TERM 171 230270 - 230241 - G 71 -7.3 -3.86816 | opp_overlap 230250, overlap 230230 230239 230242 TCCATAAAAATAAGA CTCTCATTATCTT TATA AAGATATTGAGAA TTAACCTCTAACACT TERM 172 230269 - 230242 - G 71 -8.6 -2.91005 | opp_overlap 230250, overlap 230230 230241 230239 CCATAAAAATAAGAC TCTCATTATCTT TATA AAGATATTGAGA ATTAACCTCTAACAC TERM 173 230878 - 230864 - g 83 -8.6 -4.4846 | CAACTGAAGAAGAAA TTGCTC AGG GAGCAA AAGTCACAATTATTG TERM 174 231359 - 231371 + G 70 -4.9 -4.68724 | opp_overlap 231359 AAGATCAAAATACAC TTGAT TTC ATCAA TTTTATATTAAGTCC pstS 230548 - 231450 + | phosphate ABC transporter, periplasmic phosphate-binding TERM 175 231596 - 231613 + G 74 -8.5 -3.25719 | CTTTTAAATGCTTTA TTGTTGC ATCT GCAACAA TTAGTACTCTAATAA TERM 176 231949 - 231989 + G 76 -8.6 -3.64866 | opp_overlap 231946, overlap 231950 TTTGGAAGCACATTT ATATCTTCTCTTATAAAA AACAC TTTTATAAGAGAAGACAA TTTAGGATATAATCT TERM 177 231950 - 231988 + G 93 -12.1 -2.78438 | opp_overlap 231946, overlap 231949 TTGGAAGCACATTTA TATCTTCTCTTATAAAA AACAC TTTTATAAGAGAAGACA ATTTAGGATATAATC pstC 231538 - 232446 + | phosphate ABC transporter, permease protein TERM 178 232595 - 232584 - g 70 -3 -5.32944 | opp_overlap 232584 TTTACAAGCAAAAAA GAAT CATT ATTC TTAGATGAAACAACA TERM 179 233215 - 233196 - g 88 -9.4 -4.08806 | GTAGAAAAAAATGAA GGTACAAT TGCA ATTGTACC CTGGCATTACTTTTA pstA 232443 - 233981 + | phosphate ABC transporter, permease protein TERM 180 234679 - 234640 - g 86 -10.2 -3.52079 | overlap 234642 GAATATCTGACAGAA CAGCTTTCTTCTTAAATG GATA CATTGAAGAAGAAAGCAA AACAGATGAATTATT TERM 181 234677 - 234642 - g 100 -15 -3.32966 | overlap 234640 ATATCTGACAGAACA GCTTTCTTCTTAAATG GATA CATTGAAGAAGAAAGC AAAACAGATGAATTA pstB 233985 - 234749 + | phosphate transport system ATP-binding protein gufA 235572 - 234751 - | GufA protein alaS 237378 - 235600 - | alanyl-tRNA synthetase fliG-1 238625 - 237378 - | flagellar motor switch protein pgl 239304 - 238600 - | 6-phosphogluconolactonase BDU_224 240013 - 239321 - | hypothetical protein TERM 182 240336 - 240312 - g 74 -8.1 -3.67175 | opp_overlap 240312, overlap 240308 ATGCTGCAAAAGCAA TTGAAATTCTT GAA AAAAATTTCAA TTTTGACGAATATAA TERM 183 240881 - 240869 - g 72 -4.9 -4.90079 | overlap 240873 ATTCCAACAAGAAAA GAAAT ACT ATTTC AAATGGTAGAATATA BDU_225 240083 - 241090 + | tRNA-dihydrouridine synthase A serS 242354 - 241080 - | seryl-tRNA synthetase TERM 184 242434 - 242417 - H 79 -5.7 -4.98128 | opp_overlap 242420, overlap 242420 ATAATGAAAAATAAA TTATACT AATT AGTATAA TAAGTATTATATAAT BDU_227 242482 - 243216 + | hypothetical protein TERM 185 243890 - 243867 - g 70 -5.4 -4.53163 | opp_overlap 243867 243865 CTATACATTAGAAAA TTGCAAAATA TTTT TATTTGGCAA TATTGATACCAATAA TERM 186 244324 - 244314 - g 73 -5.4 -4.8143 | overlap 244290 CCAAGAACTTAAAAA CCTT GTA AAGG TAAAAATTCCTCAAG TERM 187 244406 - 244393 - g 70 -2.3 -5.4593 | opp_overlap 244393 TTAAAAGAAGAAAAA GGACA AGGT TGGCC TATTAATTTAATGAT BDU_228 243229 - 246147 + | Zn-dependent peptidase, insulinase-like protein rpmE 246420 - 246175 - | 50S ribosomal protein L31 rho 248022 - 246478 - | transcription termination factor TERM 188 246836 - 246852 + g 78 -8.1 -4.03978 | opp_overlap 246836 ATATTTCTAGCAGAA CCAAAAA ATC TTTTTGG TTTATGTAAAGCATT TERM 189 246852 - 246836 - G 73 -8.1 -3.41229 | opp_overlap 246836 ATATTTCTAGCAGAA CCAAAAA ATC TTTTTGG TTTATGTAAAGCATT BDU_231 248516 - 248109 - | hypothetical protein BDU_232 248846 - 248520 - | HbbU protein TERM 190 248774 - 248794 + g 71 -7.1 -3.73402 | CCAACTTTTCATTAT TATTTTTAA TGT TTAAAAATA TTTGATCAACAATAT rpsT 249184 - 248858 - | 30S ribosomal protein S20 BDU_234 250009 - 249188 - | hypothetical protein TERM 191 249798 - 249821 + g 80 -8.4 -4.07246 | opp_overlap 249798 249803, overlap 249804 AAATTAACTTTAAAA CAAAATTTTT TATA AAAAATTTTG TTTCCTTTAAAGTCA TERM 192 249821 - 249798 - G 81 -8.4 -4.2237 | opp_overlap 249798 249804, overlap 249803 AAATTAACTTTAAAA CAAAATTTTT TATA AAAAATTTTG TTTCCTTTAAAGTCA BDU_235 251126 - 250020 - | conserved hypothetical GTP-binding protein TERM 193 250282 - 250267 - G 70 -6.2 -4.25104 | TCTCCTGCAGTAAAA TAGGTT CTTA AACCTA AAGTATAATAAGAAG BDU_236 253214 - 251151 - | hypothetical protein BDU_237 253314 - 254867 + | apolipoprotein N-acyltransferase, putative BDU_238 255607 - 254831 - | hypothetical protein dck 256287 - 255667 - | deoxyguanosine/deoxyadenosine kinase(I) subunit 2 TERM 194 256400 - 256388 - H 86 -3.5 -6.09888 | opp_overlap 256366 256388, overlap 256366 256398 TTTTAATAAAAAAAA TTAAT ATA ATTAA TTTCAAGTTTCTTAA glpF 257006 - 257767 + | glycerol uptake facilitator TERM 195 258205 - 258193 - g 70 -4.9 -4.79451 | AGGGCAAAGACAAAA TTTTC TTA GAAAA AACAGGTCTTGTACT glpK 257832 - 259322 + | glycerol kinase glpT 259447 - 260802 + | glycerol-3-phosphate transporter TERM 196 261500 - 261482 - g 93 -9 -4.65153 | opp_overlap 261499 GGATACAAATCAAAA GAAGATAA AAT TTATCTTC AAACATTTGATTTTG TERM 197 261856 - 261877 + G 70 -6.7 -3.89346 | opp_overlap 261856 TGGTCTATTTACAGA CTTTGTTGA CATA TCAATAAAG TTTATGCAATAAAAC glpQ 260888 - 261889 + | glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase) TERM 198 262671 - 262661 - g 70 -5.4 -4.55023 | TCTAATATCATAAAA CCTT CTC AAGG AACTCATCTGATAAT TERM 199 263082 - 263069 - g 70 -5.3 -4.59511 | AAGATGGCTGAAAAA GCTTT AACA AAAGC AATAAACGAAAATTT TERM 200 263462 - 263452 - g 71 -4 -5.01811 | TGAGCAAATCAAAAA CTTT AAA AAAG TAGCAAAAAAATATT glpA 261923 - 263485 + | glycerol-3-phosphate dehydrogenase TERM 201 263491 - 263512 + T 86 -7.3 -4.89966 | opp_overlap 263491 TTTAATCTAATCAAA GGAGGATAT AGTC ACATCCTCC TTTATTTTTAAATCT TERM 202 263512 - 263491 - T 86 -9.5 -3.95986 | opp_overlap 263491 TTTAATCTAATCAAA GGAGGATAT AGTC ACATCCTCC TTTATTTTTAAATCT BDU_245 264076 - 263582 - | hypothetical protein BDU_246 264617 - 264066 - | hypothetical protein BDU_247 265643 - 264618 - | hypothetical protein TERM 203 266311 - 266325 + G 72 -7.2 -3.94812 | opp_overlap 266310, overlap 266310 ATCAAAAAAATGGAT TTGGAT ATG ATCCAA TATTTTTAACTACAA BDU_248 265848 - 266447 + | rdgB/HAM1 protein TERM 204 268201 - 268181 - g 93 -5.5 -5.80727 | AAAAATAACAAAAAA GATGCAACT AAG AATTACATC GACTTTTTAAAAACA pepF 266573 - 268342 + | oligoendopeptidase F TERM 205 268748 - 268763 + G 74 -6.2 -4.53607 | ATTATTTTAGAGGTT TTCCAT CATT ATGGAA TTTTCTAATAATTTT BDU_250 268357 - 269061 + | phosphatidylserine synthase dedA 269072 - 269680 + | DedA protein TERM 206 269997 - 269986 - g 81 -3 -5.79595 | TTCCAAAAGAAAAAA GAAT CTAT ATTC TTGACATGTTTCCTT TERM 207 271033 - 271017 - g 73 -5.2 -4.75219 | opp_overlap 271017 271022 GAAGTATTAATAAAA CCATTT ACCGA AAATGG TATTTCAATTAACAC TERM 208 271391 - 271378 - g 78 -8.1 -4.05321 | opp_overlap 271386 GAGAAACAAACACAA TGCCC CAAT GGGCA GGCTCATGTTGGTAC TERM 209 271705 - 271689 - g 70 -5.3 -4.62712 | AAAAAAGACAACAAA TTTTTTT CAA AAAAAAA TAATAAAGAACTAAA TERM 210 272343 - 272329 - g 70 -2.2 -5.37865 | TTAATAATCAAAAAA TTATAC AAA ATATAA ACAATAAACAAATAA TERM 211 272370 - 272356 - g 71 -4.4 -4.82212 | TAAACAATAAACAAA TAATAA AAA TTATTA CAGTTAAAGACAAAC leuS 269880 - 272408 + | leucyl-tRNA synthetase TERM 212 272644 - 272634 - g 87 -2.6 -6.15717 | TAAAGACAAAAAAAA TATT TTC AATA AAGAAACTTTTAGAA TERM 213 273144 - 273163 + G 80 -5.8 -5.03994 | overlap 273156 ATGTGCTTTAATTTG GACTTTTG GAAT TAAAAGTC TTTTTATGTCTCCAA BDU_254 272419 - 274686 + | hypothetical protein lon-1 277199 - 274749 - | ATP-dependent protease LA TERM 214 276176 - 276158 - G 71 -7.4 -3.72073 | opp_overlap 276166, overlap 276154 ATTTATCAAAATCAA CCTTGGTA TCT TCCCAAGG AAGATTTGTAATAAG TERM 215 276166 - 276180 + g 80 -8.6 -3.99405 | opp_overlap 276158 276154 AAATCAACCTTGGTA TCTTCC CAA GGAAGA TTTGTAATAAGTTCA TERM 216 277227 - 277242 + H 90 -4.8 -5.88565 | opp_overlap 277227 AAATTTTTATGAGAA TTCATT TAAT AATGAA TTTTTTTATTATACA BDU_256 277268 - 277954 + | hypothetical protein recJ 277935 - 280091 + | single-stranded-DNA-specific exonuclease TERM 217 280405 - 280389 - g 80 -3.8 -5.67529 | AAGGAAAAAGAAAAA TTCAAA TAGAG TTTGAA AATAAACAATACATA BDU_258 280091 - 281047 + | hypothetical protein rpsU 281065 - 281274 + | 30S ribosomal protein S21 TERM 218 281283 - 281303 + T 100 -9.1 -5.86332 | opp_overlap 281281 281283 TAAATAATAAAATCA GGATATTCA TGG TGAATGTCC TTTTTTTTACATTGA ftsK 283676 - 281325 - | DNA segregation ATPase FtsK/SpoIIIE TERM 219 281575 - 281588 + g 77 -5.3 -5.09173 | opp_overlap 281575 TCATCATCAATATAA TTTGG TATA CCAAA TTTTTTAACCTCTTC bacA 284489 - 283689 - | undecaprenyl-diphosphatase TERM 220 283817 - 283807 - G 73 -5.4 -4.79451 | AGTCCAAATATAAAA GCAA AAA TTGC TCCCAAATTTATCTC BDU_262 286653 - 284503 - | hypothetical protein TERM 221 284658 - 284671 + g 70 -8.1 -3.02233 | overlap 284656 CGATAAAAATTTCTT TGGGC AAAT GCCCA TAATCTTTTTCCCAT TERM 222 285447 - 285437 - G 73 -5.4 -4.73613 | opp_overlap 285445 CTAGCATTAAGAAAA GCAA GCC TTGC TAAAACAGCATTGTC TERM 223 286017 - 285987 - G 76 -7 -4.28432 | AAGTTGAATTTAAAA GATTATCTTTCCCT TCA AGAACAAGATAATC ATGAGCCCTTACATG TERM 224 286123 - 286109 - G 78 -7.2 -4.53036 | TCAGAAATATTAAAA TAAAGC ACT GCTTTA AATAAAAGATTTTCA BDU_263 287839 - 286634 - | hypothetical protein BDU_264 287999 - 289402 + | hypothetical protein BDU_265 290672 - 289404 - | hypothetical protein lepB-3 290742 - 291245 + | signal peptidase I dnaK-1 292786 - 291278 - | heat shock protein 70 BDU_268 293280 - 292783 - | hypothetical protein TERM 225 293137 - 293118 - G 74 -8 -3.68222 | opp_overlap 293117 293120 TTTTAATTTCAATAA TACTGATA TTTC TATCAGTA GCTTGATTAATCTCA BDU_269 293612 - 293301 - | hypothetical protein TERM 226 293494 - 293506 + g 72 -6.3 -4.3821 | opp_overlap 293494 TCTCTCTCATTTAAA CTCAA GTG TTGAG TTTCTCTTATCTTTT BDU_270 295534 - 293636 - | hypothetical protein TERM 227 294840 - 294830 - G 70 -5.4 -4.4767 | TGATTCACCATAAAA TGGA TAG TCCA CAAATTCTTTTATTT BDU_271 296025 - 295537 - | hypothetical protein TERM 228 295749 - 295736 - G 70 -5.3 -4.62069 | opp_overlap 295721 TTCTTACTTGAAAAA TCCTT TATC AAGGA AGAATCTATATCATT ylxH-1 296922 - 296032 - | ATP-binding protein flhF 298113 - 296932 - | flagellar-associated GTP-binding protein TERM 229 297302 - 297292 - G 70 -6.8 -3.89881 | opp_overlap 297292 AGCAAGTTTCATAAA GTCC TTA GGAC TCTTACCAATTGTAT TERM 230 297851 - 297861 + g 80 -5.4 -5.243 | opp_overlap 297839 297851, overlap 297837 ACATCTTCAATTGAA GAAG TCT CTTC TTTTTTAATACTTTG flhA 300190 - 298103 - | flagellar biosynthesis protein flhB 301324 - 300203 - | flagellar biosynthesis protein fliR 302109 - 301321 - | flagellar biosynthesis protein fliQ 302389 - 302126 - | flagellar biosynthesis protein fliP 303162 - 302398 - | flagellar biosynthesis protein fliZ 303804 - 303172 - | flagellar biosynthesis protein fliN 304141 - 303797 - | flagellar motor switch protein fliM 305246 - 304188 - | flagellar motor switch protein TERM 231 304852 - 304835 - G 74 -8.5 -3.23009 | opp_overlap 304835, overlap 304826 304850 CAAAAAGCCTATCAA CTATTGC AAAT GCAATAG TTGGATCAACTTCAA TERM 232 304835 - 304852 + g 73 -8.5 -3.07994 | opp_overlap 304826 304835 304850 CAAAAAGCCTATCAA CTATTGC AAAT GCAATAG TTGGATCAACTTCAA TERM 233 305120 - 305138 + g 71 -8.8 -2.9155 | overlap 305115 CTTTAACTTTTTGTT TCTTGCCC ATA GGGCTAGA TATAATATTAGAAAG fliL 305799 - 305266 - | flagellar protein motB 306631 - 305843 - | flagellar motor rotation protein B TERM 234 306256 - 306237 - G 74 -2.2 -5.63103 | gap 1 GCTGAATCAAAAAAA GCATCTGCT AAA AG-AGATAC AACAACACCTCGCTC motA 307416 - 306631 - | flagellar motor rotation protein A TERM 235 307349 - 307332 - G 80 -5.6 -5.12707 | TTAAATCCCAAAAAA CTCCTA ATCCTG TAGGAG TAAATGCCATAGATA flbD 307634 - 307413 - | flagellar protein flgE 308976 - 307651 - | flagellar hook protein TERM 236 308911 - 308883 - G 71 -8.3 -3.27525 | opp_overlap 308892 308901, overlap 308878 308901 CTTTCTTAAAGCCAA CGGTATTAACATT TGA AATGTTATTACCA ACAACATCCATTCTT flgD 309421 - 308981 - | flagellar hook assembly protein flbC 310603 - 309434 - | flagellar protein flbB 311221 - 310607 - | flagellar protein flbA 311645 - 311214 - | flagellar protein fliI 312952 - 311642 - | flagellum-specific ATP synthase fliH 313892 - 312966 - | flagellar assembly protein fliG-2 314935 - 313901 - | flagellar motor switch protein TERM 237 313986 - 314003 + g 75 -8.5 -3.44487 | AGAGAGACAATTTTT TGTTGAG CTTC CTCAACA TCTTTACGTCTAGTG fliF 316657 - 314951 - | flagellar M-ring protein TERM 238 316234 - 316216 - G 95 -11.8 -3.28637 | overlap 316227 CATCAACATCATCAA GAGCAACA ATA TGTTGCTC AACAGCTCTTGTAAT TERM 239 316581 - 316603 + g 90 -3.4 -5.9667 | opp_overlap 316574 316581 GCAATAACCCCAAAA GCCACTTT TTGAACC ATAGTGGC TTTTTTTATCTTTTT fliE 317000 - 316671 - | flagellar hook-basal body complex protein flgC 317480 - 317016 - | flagellar basal-body rod protein flgB 317908 - 317501 - | flagellar basal-body rod protein TERM 240 317741 - 317727 - G 72 -7.2 -3.91084 | opp_overlap 317727 TTACCTCTAATCAAA GACAAA TTA TTTGTC TTTTCATTCAAAATT TERM 241 317727 - 317741 + g 76 -7.2 -4.41895 | opp_overlap 317727 TTACCTCTAATCAAA GACAAA TTA TTTGTC TTTTCATTCAAAATT hslU 319296 - 317941 - | heat shock protein hslV 319835 - 319293 - | hypothetical protein smf 320792 - 319848 - | smf protein BDU_301 321487 - 320798 - | hypothetical protein TERM 242 320864 - 320888 + g 95 -11.7 -3.65046 | opp_overlap 320879 TGAAGCCTTACTTTT TGCTTTATTAT AAA ATAATAAAGCA TTATTAAAATCACCA ftsZ 322684 - 321488 - | cell division protein TERM 243 322312 - 322332 + g 95 -11.9 -3.22223 | opp_overlap 322312, overlap 322312 CAACTTGAGCAATAA CAGGAGCAG CAC CTGTTCCTG TTCCTCCTCCCATTC TERM 244 322332 - 322312 - G 86 -9.7 -3.73534 | opp_overlap 322312 322312 CAACTTGAGCAATAA CAGGAGCAG CAC CTGTTCCTG TTCCTCCTCCCATTC ftsA 323946 - 322705 - | cell division protein divIB 324689 - 323946 - | cell division protein ftsW 325824 - 324721 - | cell division protein TERM 245 325479 - 325463 - G 70 -5.9 -4.26792 | AGATAAATTGTAAAA GAAACCT TAA AGATTTC TGATGGCTGAATACT TERM 246 325790 - 325776 - G 75 -5.8 -4.6313 | GTGAAAATAAAACAA GAAAAT AAC ATTTTC TAAGAGAGGTTTTCT mraY 326890 - 325835 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 328311 - 326914 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase BDU_308 328608 - 328327 - | hypothetical protein BDU_309 329494 - 328601 - | S-adenosyl-methyltransferase BDU_310 330317 - 329487 - | hypothetical protein TERM 247 329926 - 329905 - G 71 -4.6 -4.92669 | opp_overlap 329903 329905 GACACAAAAAAAGAA GAAATAAT ATTTAA ATTATTTC TATTTTTTATAACAA BDU_311 331409 - 330321 - | hypothetical protein TERM 248 330686 - 330656 - G 74 -8.6 -3.25419 | opp_overlap 330647 330655, overlap 330647 330655 330657 AAAAAGGATTAAAAT CTTTTATCTTTAAA TCT TTTAAAGATAAAAC CTGATTATATCCATG TERM 249 330685 - 330657 - G 93 -12.1 -2.53625 | opp_overlap 330647 330655, overlap 330647 330656 330655 AAAAGGATTAAAATC TTTTATCTTTAAA TCT TTTAAAGATAAAA CCTGATTATATCCAT BDU_312 332178 - 331420 - | hypothetical protein recN 333796 - 332210 - | ATPase involved in DNA repair BDU_314 334722 - 333823 - | probable inorganic polyphosphate/ATP-NAD kinase TERM 250 334511 - 334536 + gr 72 -6.3 -4.34737 | opp_overlap 334503 334509 334511, overlap 334503 GCAAAAATCAAATTA TCTTTATTTGA TATA TCACATAAAGA TTTATTCATTCCTGC cheW-1 335182 - 334655 - | purine-binding chemotaxis protein ftsJ 335804 - 335223 - | ribosomal RNA methyltransferase TERM 251 336748 - 336731 - g 78 -2.8 -5.85244 | AAGTAAAAGAAAAAA TATTAC AATTCA GTAATA TGATCAACTCATCAA ispB 335857 - 336903 + | octaprenyl-diphosphate synthase BDU_318 336900 - 337568 + | hypothetical protein BDU_319 338371 - 337565 - | hypothetical protein BDU_320 339304 - 338372 - | hypothetical protein mglA-1 340758 - 339301 - | methylgalactoside ABC transporter, ATP-binding protein tpn38b 341835 - 340762 - | exported protein TERM 252 342173 - 342162 - R 78 -3 -5.72053 | opp_overlap 342162 CAATCAAATAAAAAA CTAT ATTT ATAG TTTCTAAATTATAAC TERM 253 342249 - 342275 + r 70 -8.2 -3.20723 | opp_overlap 342243 342241 342269 ATCAAAATTCTCTAG GTGTTAATAAAT AAA ATTCATTAACAC TTAAATTACTAGGAA BDU_323 343326 - 342235 - | hypothetical protein TERM 254 342503 - 342491 - G 74 -4.9 -5.18866 | GCTAAATAAACAAAA TTCTT AAA AAGAA TACCTACTCTTCCTC TERM 255 342799 - 342788 - G 70 -3 -5.36441 | GTTTTATATAAAAAA GAAT TATT ATTC CAAAGTAAAATACTA TERM 256 344180 - 344170 - g 87 -2.6 -6.17033 | AAAAAAAAGAAAAAA TAAA TTA TTTA AAAGAAAATATTGAA BDU_324 343827 - 344948 + | hypothetical protein TERM 257 344993 - 344951 - f 93 -8.9 -4.86731 | gap 1, opp_overlap 344957 344987, overlap 344935 344957 TCCTTCTAAATAAAA TATAAA-GAAGAAAACAAAC ATAA ACTTGTTTTCTTCTTTTATA TCTAATAAAATTAAA TERM 258 344957 - 344986 + F 86 -8.1 -4.62984 | opp_overlap 344935 344951 344957 TAAATAAAATATAAA GAAGAAAACAA ACATAAAC TTGTTTTCTTC TTTTATATCTAATAA TERM 259 344986 - 344957 - f 95 -9.5 -4.59774 | opp_overlap 344957, overlap 344935 344951 TAAATAAAATATAAA GAAGAAAACAAAC ATAA ACTTGTTTTCTTC TTTTATATCTAATAA TERM 260 345366 - 345353 - g 71 -8.1 -3.24735 | opp_overlap 345353 CATTGAAACACCTAA GTGGG TTAT CCCAC TATCTCAAAAAATAT BDU_325 345042 - 345404 + | hypothetical protein BDU_326 346552 - 345437 - | hypothetical protein TERM 261 346441 - 346429 - G 71 -4.1 -5.06414 | TTTTTCTAATAAAAA GATGA AAT CCATC ATCATGAGCTTCAAC BDU_327 349471 - 346616 - | hypothetical protein BDU_328 350379 - 349486 - | glycerol-3-phosphate O-acyltransferase TERM 262 349586 - 349596 + g 73 -5.4 -4.68528 | AAAATTTCTTTTGTT GGTT CTA AACC TTCTTTTTTCAATTT oppA-1 350579 - 352165 + | oligopeptide transport system substrate-binding protein TERM 263 352226 - 352254 + F 85 -5.4 -5.40072 | opp_overlap 352226 TTATTCAAATACAAG CCACTTTTATAA ATGAG TTATATGAGTGG TTTTTTTAAAAAAAC oppA-2 352511 - 354184 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 264 354226 - 354191 - f 86 -4.8 -5.65678 | opp_overlap 354191 354195 ATAAAATAGAAAAAA CAGACATCTAAATGAA ACAT TTTTGTTAGATGTCTG TAAATTGAAAATTTT TERM 265 354191 - 354226 + F 70 -8.6 -2.54655 | gap 1, opp_overlap 354191, overlap 354195 ATAAAATAGAAAAAA CAGACATCTAAATGAAA CAT TTTTGTT-AGATGTCTG TAAATTGAAAATTTT TERM 266 354721 - 354709 - g 70 -4.9 -4.788 | AAACTAATGCAAAAA TATCA CCT TGATA AGCCTTTTTATATGC TERM 267 354839 - 354826 - g 73 -5.3 -4.70453 | AATCAATATATAAAA TTAGG GTTT CCTAA GTCATTTACAATTGG oppB-1 354553 - 355473 + | oligopeptide ABC transporter, permease protein TERM 268 355466 - 355456 - f 85 -5.4 -5.43414 | ATTATATACAAAAAA CTTG ATC CAAG AATATAGGAGAACAA oppC-1 355457 - 356542 + | oligopeptide transport system permease protein oppD 356553 - 357425 + | oligopeptide transport system ATP-binding protein TERM 269 357834 - 357820 - g 72 -3.6 -5.19998 | ACAATGAAAACAAAA TTATTC CAC GAACAA AACAAGAAATAGAAC oppF 357426 - 358409 + | oligopeptide transport system ATP-binding protein BDU_335 359340 - 358534 - | P26 TERM 270 358675 - 358662 - G 73 -5.3 -4.66418 | opp_overlap 358664, overlap 358664 CAAAATAATAATAAA TCCTA CCCT TAGGA AGATCTTTAAGCTTA TERM 271 360511 - 360498 - g 76 -3.8 -5.49809 | GAAATGGCAAAAAAA GCAG GCTATA CTGC AATAGTATCACATAG eno 359418 - 360716 + | enolase TERM 272 360729 - 360751 + T 74 -4.8 -4.96848 | opp_overlap 360732, overlap 360732 360749 TAAGAATAAATAATT AAAGCCCTCT TTC AAAGGGCTTA TTTTTATATAAACAA TERM 273 360748 - 360732 - T 85 -8.7 -4.20454 | opp_overlap 360729 360732 GAATAAATAATTAAA GCCCTCT TTC AAAGGGC TTATTTTTATATAAA TERM 274 360732 - 360748 + T 76 -6.5 -4.58943 | opp_overlap 360732, overlap 360729 GAATAAATAATTAAA GCCCTCT TTC AAAGGGC TTATTTTTATATAAA rpsI 361197 - 360787 - | 30S ribosomal protein S9 rplM 361657 - 361208 - | 50S ribosomal protein L13 BDU_339 362522 - 361737 - | hypothetical protein gatB 363972 - 362515 - | glu-tRNA amidotransferase, subunit B gatA 365407 - 363962 - | glu-tRNA amidotransferase, subunit A TERM 275 364119 - 364107 - G 72 -6.3 -4.29432 | overlap 364114 GAAAGTGCAGGAAAA CCAAT AAG ATTGG CAATCACAGTACATA TERM 276 364641 - 364651 + g 70 -5.4 -4.51743 | ACAGCCAATTTAGTA CCTT TTA AAGG TTTATTTAATAATGG gatC 365694 - 365419 - | glu-tRNA amidotransferase, subunit C uvrD 367800 - 365704 - | DNA helicase TERM 277 366459 - 366473 + g 74 -8.6 -3.32756 | opp_overlap 366458 366446 366459, overlap 366458 AACTTAAAAATATAT CAAGAG AAT CTCTTG CTTTTCCTTTAAGAT TERM 278 366473 - 366459 - G 70 -8.6 -2.73505 | opp_overlap 366459 366458, overlap 366458 366446 AACTTAAAAATATAT CAAGAG AAT CTCTTG CTTTTCCTTTAAGAT TERM 279 366617 - 366627 + g 80 -4 -5.63517 | opp_overlap 366617, overlap 366610 ATTATTCTCAAAAAA GATA CTT TATC TTTTTTATTTACAAA TERM 280 366627 - 366617 - G 71 -4 -5.03715 | opp_overlap 366610 366617 ATTATTCTCAAAAAA GATA CTT TATC TTTTTTATTTACAAA TERM 281 366757 - 366737 - G 71 -2.5 -5.42259 | TTATTTTTAAAAAAA GCCTTCTCA AAT TGCAAAGAC TGATGATTAAATCTA BDU_344 368999 - 367797 - | hypothetical protein BDU_345 369688 - 369011 - | hypothetical protein TERM 282 370040 - 370026 - g 81 -2.9 -5.88476 | overlap 370015 AAAACAAATAAAAAA TTTGA AAATA TCAAA CCTCCTCTAAGATTT TERM 283 370312 - 370300 - g 79 -3.5 -5.61824 | CAAAAGCCAAAAAAA TTATT GAA AATAA CGATATAACTGAGAA TERM 284 370376 - 370349 - g 72 -5 -4.81851 | overlap 370335 AGTCAAACTCAAAAA TGAATATGACAA TAAA TTACCATACTCA ACATTCATTGAAAAT TERM 285 370669 - 370653 - g 93 -4.5 -6.00086 | opp_overlap 370653 ACATTAGAAAAAAAA TTATCTC CTC AAGATAA TGCTTTAAAATATTT BDU_346 369828 - 371237 + | fibronectin/fibrinogen-binding protein, putative pyk 371351 - 372784 + | pyruvate kinase TERM 286 373103 - 373084 - T 77 -2.2 -5.83226 | overlap 373086 373088 AATTTAATAAAAAAA TTTACATT TACA AATGTAGA AGACAAAATAATAGA rpmB 373836 - 373558 - | 50S ribosomal protein L28 BDU_349 375444 - 373846 - | hypothetical protein TERM 287 374858 - 374834 - G 84 -9.5 -3.67954 | opp_overlap 374837, overlap 374837 TAAATACATTCCAAA TAATCCTTAAT ATC ATCAAGGATTA CTCCACAACTGACAG TERM 288 374855 - 374837 - G 70 -6.8 -3.9578 | opp_overlap 374837, overlap 374834 ATACATTCCAAATAA TCCTTAAT ATC ATCAAGGA TTACTCCACAACTGA TERM 289 375848 - 375837 - g 77 -3 -5.62219 | overlap 375829 AACATATCAAAAAAA TTTG CATA CAAA ATCGTACCATTAAGT TERM 290 376557 - 376536 - g 70 -7.5 -3.37003 | opp_overlap 376536 376538 376540, overlap 376535 ATTATAAATGAAAAT TATATGAAT AAAG ATTCATATA TACTTAATAAAGAAC BDU_350 375528 - 376643 + | hypothetical protein BDU_351 378452 - 376638 - | hypothetical protein BDU_352 379486 - 378458 - | hypothetical protein BDU_353 379919 - 379434 - | transcription factor, putative TERM 291 379847 - 379857 + gr 78 -2.6 -5.80951 | CACCATTAAATTCCT TATT CTG AATA TTTTTTATTTTGCCT BDU_354 380557 - 379964 - | hypothetical protein BDU_355 381278 - 380550 - | uncharacterized protein conserved ctp 382766 - 381282 - | carboxyl-terminal protease BDU_357 382809 - 383240 + | hypothetical protein ylxH-2 383244 - 384377 + | ATP-binding protein TERM 292 384807 - 384793 - g 78 -4.4 -5.54192 | ACGAATGTAAAAAAA TATTTT AAA AAAATA ACAGATTATGGTGCA lgt 384388 - 385341 + | prolipoprotein diacylglyceryl transferase TERM 293 385771 - 385753 - g 89 -6.2 -5.53436 | ATACAACAGAAAAAA TTTTATTA TGA TAATAAAA ATGCCAATCTTGATT BDU_360 385399 - 387396 + | periplasmic protein yscI 387529 - 388902 + | aminopeptidase I BDU_362 388853 - 389170 + | hypothetical protein TERM 294 389193 - 389171 - T 84 -5.7 -5.18158 | gap 1, opp_overlap 389183, overlap 389173 AATAAAAAAAAATAA TA-GACCCAA CTAT TTGGGTCCTA AAATTTAAAATTTTT TERM 295 389190 - 389173 - T 90 -9.9 -4.13373 | opp_overlap 389183, overlap 389171 TAAAAAAAAATAATA GACCCAA CTAT TTGGGTC CTAAAATTTAAAATT gpsA 390243 - 389191 - | glycerol-3-phosphate dehydrogenase, NAD(P) clpA 392577 - 390268 - | ATP-dependent Clp protease, subunit A TERM 296 390620 - 390578 - G 84 -11.1 -2.51642 | gap 1, opp_overlap 390582 390585 390586, overlap 390586 ACATGATCTACTAAG TCTAGAAATTTATTAGAAAA ACGT TTTTCTAATAAACTTCT-GA TATCAACAGTTTCAT TERM 297 390582 - 390617 + g 84 -10.8 -2.63112 | opp_overlap 390578 390586, overlap 390585 390586 GATCTACTAAGTCTA GAAATTTATTAGAAAA ACGT TTTTCTAATAAACTTC TGATATCAACAGTTT TERM 298 390586 - 390613 + g 78 -10.2 -2.67747 | opp_overlap 390578 390586, overlap 390585 390582 TACTAAGTCTAGAAA TTTATTAGAAAA ACGT TTTTCTAATAAA CTTCTGATATCAACA TERM 299 390613 - 390586 - G 91 -10.2 -3.93236 | opp_overlap 390586 390585 390582, overlap 390578 TACTAAGTCTAGAAA TTTATTAGAAAA ACGT TTTTCTAATAAA CTTCTGATATCAACA TERM 300 391063 - 391051 - G 72 -3.5 -5.27938 | ATTTTTAAAGAAAAA TTTAA TTC TTAAA AGCTTAATATGCAAA tyrS 393787 - 392567 - | tyrosyl-tRNA synthetase glyS 395129 - 393792 - | glycyl-tRNA synthetase gltX 396664 - 395144 - | glutamyl-tRNA synthetase BDU_368 397415 - 396633 - | hypothetical protein TERM 301 396846 - 396860 + gH 95 -7.2 -5.41746 | opp_overlap 396845 TGTAAAAATAAGATC TCCTTT TAA AAAGGA TTTTTTTAAAAAATT TERM 302 397392 - 397382 - GH 74 -2.6 -5.64328 | AACAAAAAAACAAAA TATT AAA AATA AAAAGTATTCTGTCA TERM 303 398054 - 398034 - g 77 -6.1 -4.64157 | opp_overlap 398034 TAAATAATCATAAAA CTGTTGAAC TTT GCACAACAG CTCTTCTTCATAAAA TERM 304 398680 - 398652 - g 76 -9.1 -2.97255 | opp_overlap 398656, overlap 398656 TAAGACAAGATGAGA TAAACCTTATTTT AAA AAAATATGGTTTA AAAGAAATATAAAAA BDU_369 397547 - 398692 + | hypothetical protein pfs-1 398706 - 399419 + | 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase TERM 305 399642 - 399631 - gf 78 -3 -5.73563 | AGTAAAGCAAAAAAA GATA TAGA TATC AAAGAAACCGCAAAA metK 399436 - 400605 + | S-adenosylmethionine synthetase BDU_372 400518 - 401075 + | autoinducer-2 production protein pkcI 401635 - 401204 - | protein kinase C1 inhibitor mgtE 403032 - 401671 - | Mg2 transport protein BDU_375 404511 - 403087 - | hypothetical protein TERM 306 404177 - 404166 - G 71 -4.4 -4.90013 | overlap 404167 CAACCCAAGCAAAAA TTGG TAAT CCAA TACCATCATCATTTC TERM 307 404337 - 404323 - G 90 -5.7 -5.72254 | GTAAACAAGAAAAAA GCTTG AAAGA CAAGC TTGCAATTGATCTAT TERM 308 404603 - 404591 - R 72 -6.3 -4.26622 | opp_overlap 404590 AAATGAGATTTAAAA CCAAA AAT TTTGG ATATTAAACATAAAT TERM 309 404716 - 404706 - R 74 -2.6 -5.80817 | CCTAAGATAAAAAAA TTAA TCA TTAA AATACGTATCAAAAT bmpA-1 405805 - 404795 - | basic membrane protein A bmpC 406932 - 405862 - | basic membrane protein C bmpA-2 408119 - 407091 - | basic membrane protein A TERM 310 407712 - 407700 - G 77 -6.3 -4.67755 | opp_overlap 407699 ATACCCAGCTAAAAA TGAAG CCT CTTCA ACTTTAAAGGAAAGA bmpD 409189 - 408143 - | basic membrane protein D rpsG 409726 - 409253 - | 30S ribosomal protein S7 rpsL 410115 - 409741 - | 30S ribosomal protein S12 rpoC 414311 - 410178 - | DNA-directed RNA polymerase beta' chain TERM 311 411430 - 411442 + g 83 -4.9 -5.56568 | overlap 411424 TGAGAATCTGAAACC TTAAG TTT CTTAA TTTTTTTAATACTCT rpoB 417793 - 414326 - | DNA-directed RNA polymerase beta chain TERM 312 417849 - 417824 - R 85 -8.3 -4.46254 | TTAAGACACAATAAA CCACATGCCAC TTAA ACGACATGTGG AATAAAAAATTTGGC rplL 418250 - 417879 - | 50S ribosomal protein L7/L12 rplJ 418811 - 418323 - | 50S ribosomal protein L10 rplA 419496 - 418822 - | 50S ribosomal protein L1 rplK 419930 - 419496 - | 50S ribosomal protein L11 nusG 420540 - 419986 - | transcription antitermination factor TERM 313 420490 - 420512 + g 78 -8.6 -3.86897 | overlap 420491 TATTTCCTGTTCTAT TTTTTTCTCA TAC TGAGAAAAAG TTTGTAGCACATACC TERM 314 420491 - 420511 + g 80 -9.9 -2.91924 | overlap 420490 ATTTCCTGTTCTATT TTTTTCTCA TAC TGAGAAAAA GTTTGTAGCACATAC secE 420721 - 420551 - | preprotein translocase SecE subunit rpmG 421013 - 420834 - | 50S ribosomal protein L33 BDU_393 422062 - 421211 - | hypothetical protein TERM 315 421584 - 421574 - G 70 -5.4 -4.55295 | opp_overlap 421574 TCCGGTATAAACAAA CTGT TCA ACAG TTGTATTCATTAATG BDU_394 423137 - 422073 - | hypothetical protein TERM 316 423618 - 423630 + GH 70 -4.9 -4.70659 | TTAACAAAAGATGGT CATAA GGG TTATG TTTTTGACTATGCAC BDU_395 423120 - 424475 + | putative lipoprotein TERM 317 424706 - 424690 - g 71 -2.4 -5.4111 | AAGAATTACAAAAAA TAAAAA ATGAA TTTTTA ATTACATCTATATAT TERM 318 425076 - 425054 - g 84 -3.4 -5.75945 | ATTGCTTAAAAAAAA TGTCTACATC AGC GATGAATACA AAAAAGAAATTAAAA BDU_396 424488 - 425144 + | hypothetical protein TERM 319 425660 - 425631 - g 80 -3.8 -5.626 | opp_overlap 425612, overlap 425612 TATTTGATAAAAAAA TATTTCTTGAAA CATTCT TTCCAAAAAATA TTTTTACTATATTTA BDU_397 425294 - 426484 + | glutamate transporter proS 427986 - 426511 - | prolyl-tRNA synthetase TERM 320 427307 - 427317 + g 82 -5.4 -5.48063 | TAATGTGATGTTCCT GCTT GCA AAGC TTTTTTATCTTGCAT TERM 321 428261 - 428303 + H 100 -14 -3.89334 | opp_overlap 428261 428258 428276 428285, overlap 428253 428263 428276 TTATACTTAAATTTA TATTTATATTAAAAATATGT CAA ACATATTTTTAATATAAATC TTTGCTGTAATATTT TERM 322 428303 - 428261 - H 100 -14 -2.67244 | opp_overlap 428253 428261 428263 428276, overlap 428258 428276 428285 TTATACTTAAATTTA TATTTATATTAAAAATATGT CAA ACATATTTTTAATATAAATC TTTGCTGTAATATTT TERM 323 428263 - 428301 + H 100 -16.6 -3.5218 | opp_overlap 428261 428258 428276 428285, overlap 428253 428261 428276 ATACTTAAATTTATA TTTATATTAAAAATATGT CAA ACATATTTTTAATATAAA TCTTTGCTGTAATAT TERM 324 428288 - 428276 - H 71 -4.9 -4.81551 | opp_overlap 428263 428261 428276, overlap 428261 428258 428285 TATTTATATTAAAAA TATGT CAA ACATA TTTTTAATATAAATC TERM 325 428276 - 428288 + H 71 -4.9 -4.81551 | opp_overlap 428276 428261 428258 428285, overlap 428263 428261 TATTTATATTAAAAA TATGT CAA ACATA TTTTTAATATAAATC TERM 326 428318 - 428340 + H 76 -8 -3.70043 | overlap 428316 CTTTGCTGTAATATT TATTTTTATA AGC TATAAAAATA TGTTTGTATATTACA BDU_399 428772 - 429395 + | hypothetical protein BDU_400 429419 - 430216 + | hypothetical protein manA 431388 - 430267 - | mannose-6-phosphate isomerase fruA-1 433253 - 431385 - | PTS system, fructose-specific IIABC component TERM 327 433477 - 433466 - g 70 -3 -5.3689 | ATAAAGAAAATAAAA TTTC AAAT GAAA AAACACAAAAAAAAG BDU_403 433378 - 434058 + | uncharacterized conserved protein in borrelia TERM 328 434832 - 434816 - g 91 -8.1 -5.14477 | opp_overlap 434815 434819 TACAGATTTAAAAAA TTACGTT GTG AACGTAA ATTCAATTGAAGAGA nucA 434055 - 434939 + | endonuclease precursor BDU_405 434936 - 435700 + | hypothetical protein BDU_406 436316 - 435720 - | hypothetical protein TERM 329 435901 - 435887 - G 77 -5 -5.3321 | AAGCAACAACAAAAA CAGAAA TAC TTCCTG CAAACGTTTTATTAT BDU_407 437335 - 436316 - | peptidyl-prolyl cis-trans isomerase cheR-2 437483 - 438346 + | chemotaxis protein methyltransferase cheB-1 438382 - 439542 + | protein-glutamate methylesterase TERM 330 439984 - 439974 - g 70 -5.4 -4.60797 | CTTGCAGACAGAAAA GTTG AGA CAAC TCTAAAGAGAGCTTG TERM 331 439997 - 440013 + G 72 -5.9 -4.56597 | AACTCTAAAGAGAGC TTGGAAT TGT GTTCCAA TTTTTGAAAAAACAA traB 439566 - 440774 + | pheromone shutdown protein TERM 332 441040 - 441028 - g 70 -4.9 -4.66537 | overlap 441034 TCGTTGAAGACAAAA TCAAT ACT ATTGA CAATAGGGATAATTT adk 440814 - 441455 + | adenylate kinase TERM 333 441996 - 441982 - g 70 -5 -4.66609 | opp_overlap 441982 TATCCCATGCAAAAA TAGGAA TTA CTCCTA TTGCATTTTTAAATA BDU_412 441555 - 442631 + | hypothetical protein rrp-1 443579 - 442647 - | response regulatory protein BDU_414 448021 - 443576 - | sensory transduction histidine kinase TERM 334 447499 - 447486 - G 74 -3.9 -5.26918 | ATATGCCATAAAAAA TACAA TGAT TTGTA ACTTCCATATATTAA TERM 335 447592 - 447574 - G 71 -2.4 -5.46698 | CTGAAAATGAAAAAA CATTATCA ATA TGACCATG CAACTTCAAAATATC TERM 336 450581 - 450592 + r 77 -7.2 -4.2354 | CAGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC BDU_417 452180 - 451293 - | hydrolase hpt 452266 - 452790 + | hypoxanthine phosphoribosyltransferase TERM 337 453194 - 453183 - g 91 -7.2 -5.31275 | overlap 453185 TGGCACTACAAAAAA GGGC ATTG GCCC ATGCTACGCTGACAA purA 452800 - 454083 + | adenylosuccinate synthase purB 454068 - 455462 + | adenylosuccinate lyase mag 456058 - 455468 - | 3-methyladenine DNA glycosylase TERM 338 455624 - 455608 - G 75 -3.7 -5.40072 | TCTTCCTTAAAAAAA GCTTACT ATC ATTAAGC AAATCTATTTTGTTA TERM 339 456591 - 456560 - R 89 -11.1 -3.51329 | overlap 456586 456587 TACTGCTAATTATAA CCTCCATTTATTC AGCCTA AAATAAATGGAGG TTGAGGGACTCGAAC TERM 340 456618 - 456586 - R 78 -6.9 -4.67048 | opp_overlap 456616, overlap 456560 456587 TCAGCCTAAAATAAA TGGAGGTTGAGGG ACTCGAA CCCTCGACCCCCG GCTTGCAAAGCCGAT TERM 341 456617 - 456587 - R 86 -10.4 -3.39506 | opp_overlap 456616, overlap 456560 456586 CAGCCTAAAATAAAT GGAGGTTGAGGG ACTCGAA CCCTCGACCCCC GGCTTGCAAAGCCGA TERM 342 456750 - 456734 - R 78 -9.5 -3.24329 | overlap 456732 TACCTTTAAGTAATA CCTTTCT CTT AGAAAGG AGGTGATCCAGCCAC TERM 343 457659 - 457675 + r 77 -8.7 -3.63744 | opp_overlap 457656, overlap 457652 457649 457669 GTTTCTAGCATAGCT CCACAGT TGA GCTGTGG TATTTTACGCACAGA BDU_425 459452 - 458778 - | hypothetical protein BDU_426 459709 - 460026 + | hypothetical protein BDU_427 460422 - 460033 - | hypothetical protein pepQ 460536 - 461114 + | proline dipeptidase (PepQ) TERM 344 461927 - 461902 - g 72 -4.9 -4.9218 | GATTTATTACAAAAA GTATTTAAAGA AAAA TTTTTAAATAC CAAAATAAGAAAAAA pf32 461311 - 462075 + | chromosome segregation protein TERM 345 462434 - 462400 - g 89 -11.6 -2.867 | overlap 462404 ATTAATATCACGATA TGAATTGCTTGTCGAA AAT TCCGATAAGCAATCCA TAATAAAAAATTTAC TERM 346 462430 - 462404 - g 74 -8.8 -3.3071 | overlap 462400 ATATCACGATATGAA TTGCTTGTCGAA AAT TCCGATAAGCAA TCCATAATAAAAAAT BDU_430 462065 - 462754 + | hypothetical protein spo0J 463529 - 462747 - | stage 0 sporulation protein J TERM 347 463640 - 463619 - R 100 -11.7 -6.2845 | opp_overlap 463622 AATCACAAAAAAAAA GAATGTTCC ACGT GGAACATTC TAACAATATCATTAA gyrA 466113 - 463666 - | DNA gyrase, subunit A TERM 348 464643 - 464661 + g 75 -7.4 -4.20354 | CATAAATTATTTTTG TTCGGCGA TCA TCGCCAAA TTTTAAACTTAAATT gyrB 468029 - 466110 - | DNA gyrase, subunit B TERM 349 466750 - 466762 + g 70 -6.3 -4.18367 | CCTGCAGAATCACCT TCTAC AAT GTAGA TTTCTCTCTCTGCTG TERM 350 467021 - 467033 + g 70 -7.7 -3.35327 | TTCCTTTGGTTTGAC CCTCA AAC TGAGG TTCTGGCACTTTAAT TERM 351 468759 - 468729 - g 100 -12.8 -4.30177 | opp_overlap 468735, overlap 468732 TATTATAGGAACAAA CAATAAGCTTGCAT ATA ATGCAAGCTTATCA ATCGCAAAAAACCCT TERM 352 468756 - 468732 - g 100 -14.5 -4.2602 | opp_overlap 468735, overlap 468729 TATAGGAACAAACAA TAAGCTTGCAT ATA ATGCAAGCTTA TCAATCGCAAAAAAC TERM 353 468735 - 468753 + G 95 -11.8 -3.35679 | opp_overlap 468732 468729 AGGAACAAACAATAA GCTTGCAT ATA ATGCAAGC TTATCAATCGCAAAA dnaA 468262 - 469716 + | chromosomal replication initiator protein TERM 354 469761 - 469713 - f 71 -2.8 -5.59962 | gap 1, opp_overlap 469720, overlap 469720 469732 CAAAATAAACAAAAA TTAGTAA-CATTGTTCAAAATCA AAAA TATTTTTGAACAATGTTTAACAA ATTGAACAAAAAATT TERM 355 469753 - 469720 - f 77 -9.1 -3.4409 | opp_overlap 469720, overlap 469713 469732 AACAAAAATTAGTAA CATTGTTCAAAATCA AAAA TATTTTTGAACAATG TTTAACAAATTGAAC TERM 356 469949 - 469923 - f 100 -8.2 -5.12987 | opp_overlap 469920 TCAAATAAAAAGAAA TCTTTTACCTTT ATA AAAGTTAAAAGA TAATAATATAATAAA dnaN 469980 - 471140 + | DNA polymerase III, subunit beta recF 471161 - 472228 + | DNA replication and repair protein RecF BDU_437 472209 - 472508 + | hypothetical protein rpmH 472603 - 472758 + | 50S ribosomal protein L34 rnpA 472739 - 473083 + | ribonuclease P protein component BDU_440 473080 - 474717 + | 60kDa inner-membrane protein jag 474714 - 475436 + | spoIIIJ-associtated protein TERM 357 475973 - 475953 - g 72 -3.3 -5.26875 | GCTTGAATGAAAAAA TGCCATC AAGTGAA GATAGCA TTACAGATCATCCTT BDU_442 475493 - 476551 + | nucleotide sugar epimerase fba 476690 - 477769 + | fructose-bisphosphate aldolase TERM 358 477813 - 477830 + F 100 -11.3 -5.71295 | AAAAATTTAAGTTTT GTCGCCT TTGT AGGCGAC TTTTTATTTTTGTGT TERM 359 478217 - 478201 - g 71 -4.5 -4.87893 | opp_overlap 478201 AATTTCAATTAAAAA TGATTAT TTG ACAATCA GTTATGAAAATAAAG BDU_444 478001 - 478432 + | heat shock protein, HSP20 family TERM 360 478450 - 478473 + T 100 -12.6 -5.4593 | opp_overlap 478454 TTTCTGCTCCCTTAA TTAAGGATGC TTTT GCATCCTTAA TTTTTATTATTTTCA TERM 361 478469 - 478454 - T 77 -9 -3.33696 | opp_overlap 478450 TGCTCCCTTAATTAA GGATGC TTTT GCATCC TTAATTTTTATTATT aspS 480227 - 478470 - | aspartyl-tRNA synthetase napA_1 482351 - 480231 - | Na+/H+ antiporter TERM 362 480435 - 480445 + g 100 -5.4 -6.11243 | GTGGCTGATTCCGAT TGCA ATG TGCA TTTTTTTTATTAAAT ptsH-1 482626 - 482348 - | phosphocarrier protein HPr BDU_448 482952 - 482641 - | hypothetical protein ntrA 484183 - 482927 - | RNA polymerase sigma-54 factor TERM 363 483732 - 483759 + g 70 -5.7 -4.27617 | overlap 483730 483733 ACGCAAATTCCTATT GGATCAAATTG TTGAAT CAATTTGATCA TTTTAGTGACCTGTG TERM 364 483733 - 483758 + g 78 -9.2 -3.16088 | overlap 483730 483732 CGCAAATTCCTATTG GATCAAATTG TTGAAT CAATTTGATC ATTTTAGTGACCTGT BDU_450 484719 - 484186 - | chromate transport protein, putative TERM 365 484307 - 484355 + g 78 -8.6 -3.82824 | opp_overlap 484310 484316 484345, overlap 484302 484308 TTTGAAAGTTTTATA TTATTATAATCTATTTTGAAAA ATATG TTTTCAAATAAGATTATAATAG TTATTATCCATAGTG TERM 366 484308 - 484354 + g 80 -9.9 -2.89212 | opp_overlap 484310 484316 484345, overlap 484302 484307 TTGAAAGTTTTATAT TATTATAATCTATTTTGAAAA ATATG TTTTCAAATAAGATTATAATA GTTATTATCCATAGT BDU_451 485300 - 484722 - | chromate transport protein, putative TERM 367 485056 - 485068 + g 75 -3.5 -5.43866 | AATACAAATGCACCT TTAAA CCC TTTAA TTTTTTTCCCAATTA TERM 368 485400 - 485417 + H 90 -7.1 -5.13527 | ATGATGATTGTGTGA TACCTAT TGGT ATAGGTA TTTTGTTTGTTAATT TERM 369 485453 - 485463 + G 91 -4 -6.04419 | TTTTTTAATTGGTAA TAAG GGT CTTA TTTTTTTGTTATTTT BDU_452 485446 - 486366 + | hypothetical protein TERM 370 486348 - 486368 + T 90 -7.7 -5.09245 | CATTCATGTTGTGAA TCTTAGTAA ACT TTGCTAAGA TTTTTGTGATTTTGA BDU_453 487516 - 486350 - | lipopolysaccharide biosynthesis-related protein TERM 371 486901 - 486911 + g 95 -4 -6.30182 | opp_overlap 486901 TTCCAACGAAGATTA TGAT TTT ATCA TTTTTTTTTATGTCA BDU_454 487584 - 488567 + | DNA polymerase III delta subunit uvrC 490379 - 488571 - | excinuclease ABC, subunit C TERM 372 489425 - 489436 + g 73 -3 -5.42862 | overlap 489434 TTAATTTTGTAATGT TTGA AGTG TCAA TTTTTTTAAAAATGT BDU_456 490490 - 492007 + | hypothetical protein BDU_457 491943 - 493307 + | hypothetical protein TERM 373 493456 - 493469 + T 77 -5.3 -5.08088 | opp_overlap 493432 GGGTTCGAATCCCAT TCTCT CCGT AGAGA TTTTTATTAAAGCTT BDU_460 494358 - 493627 - | hypothetical protein TERM 374 494385 - 494405 + H 72 -4.1 -5.05712 | opp_overlap 494385 494387 TTCTTATAAATGAAT TACTATTAA CTT TTAAGAGTA TTTTTGATTATTTGT TERM 375 496307 - 496323 + G 70 -8.1 -3.08327 | overlap 496309 AAAGAAACTTTTATT TACTTAG TGT CTAAGTA TGTTCAAACTTTAGT dnaX 494903 - 496570 + | DNA polymerase III, subunits gamma and tau BDU_464 496573 - 496872 + | hypothetical protein recR 496876 - 497460 + | recombination protein RecR ndk 497714 - 498295 + | nucleoside-diphosphate kinase TERM 376 498553 - 498579 + G 78 -8.9 -3.19602 | opp_overlap 498553 498556, overlap 498556 498558 AATAGAAAAGTATAA TAATGCTCCTT TAACT AAGGAGTATTA TATTGATATAAGGAA BDU_467 498299 - 499123 + | putative adenine-specific DNA methyltransferase BDU_468 499337 - 499873 + | hypothetical protein BDU_469 499870 - 500565 + | hypothetical protein BDU_470 500501 - 501334 + | ABC transporter, ATP-binding protein TERM 377 501606 - 501645 + G 75 -9.6 -2.53715 | opp_overlap 501619, overlap 501605 TTATGCAGATTGTCT TCCTATATATATATTTGA CAAA TCAAAAAAATATATAGGA CTTGCTCATAGTGGG BDU_471 501331 - 502020 + | hypothetical protein BDU_472 502022 - 502768 + | hypothetical protein lsp 502778 - 503290 + | signal peptidase II TERM 378 503473 - 503493 + G 74 -4.1 -5.22312 | overlap 503474 TTGTCAAGTGTTATT TTTAGGAAT ATT ATTTCTAAG TTTTTTGATCTGGAT BDU_474 503287 - 503511 + | hypothetical protein BDU_475 503526 - 504344 + | hypothetical protein TERM 379 505306 - 505322 + G 76 -8.7 -3.53563 | opp_overlap 505305 ATTCCTAAAATTGAT GATGGTC CTT GGCCATC TTTCCCAACAGATCT murA 504403 - 505683 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase BDU_477 505920 - 507278 + | hypothetical protein BDU_478 507750 - 507361 - | hypothetical protein TERM 380 507417 - 507431 + g 74 -2.2 -5.58179 | overlap 507419 GCTTATTGACATTGA TATTTA AGT TAAATG TTTTTTCTTCTCCTG TERM 381 507819 - 507836 + H 71 -2.7 -5.4833 | opp_overlap 507822, overlap 507822 AATAATTTAGTTATA GCATTGA TTGC TCAATTC TTTTTTATTGACTAA TERM 382 508463 - 508452 - g 78 -5.8 -4.90525 | GAACCTCAAACAAAA GAGC ATTT GCTC CTTGCACAAAGAATG tuf 508098 - 509282 + | translation elongation factor TU rpsJ 509328 - 509639 + | 30S ribosomal protein S10 rplC 509673 - 510302 + | 50S ribosomal protein L3 rplD 510304 - 510933 + | 50S ribosomal protein L4 rplW 510955 - 511251 + | 50S ribosomal protein L23 rplB 511270 - 512103 + | 50S ribosomal protein L2 rpsS 512113 - 512391 + | 30S ribosomal protein S19 rplV 512398 - 512760 + | 50S ribosomal protein L22 rpsC 512764 - 513594 + | 30S ribosomal protein S3 rplP 513613 - 514029 + | 50S ribosomal protein L16 rpmC 514033 - 514233 + | 50S ribosomal protein L29 rpsQ 514239 - 514493 + | 30S ribosomal protein S17 rplN 514541 - 514909 + | 50S ribosomal protein L14 rplX 514920 - 515225 + | 50S ribosomal protein L24 rplE 515229 - 515777 + | 50S ribosomal protein L5 rpsN 515792 - 515977 + | 30S ribosomal protein S14 rpsH 515987 - 516385 + | 30S ribosomal protein S8 TERM 383 516561 - 516545 - g 71 -8.1 -3.25113 | overlap 516548 GGTTAAAATTGAAGA CAACAAT ATT ATTGTTG AGAGAGCTTTTAATG rplF 516405 - 516947 + | 50S ribosomal protein L6 rplR 516965 - 517324 + | 50S ribosomal protein L18 rpsE 517336 - 517830 + | 30S ribosomal protein S5 rpmD 517834 - 518145 + | 50S ribosomal protein L30 rplO 518138 - 518575 + | 50S ribosomal protein L15 secY 518588 - 519892 + | preprotein translocase SecY subunit rpmJ 519902 - 520015 + | 50S ribosomal protein L36 rpsM 520025 - 520402 + | 30S ribosomal protein S13 rpsK 520433 - 520822 + | 30S ribosomal protein S11 TERM 384 520937 - 520950 + G 70 -5.3 -4.45399 | opp_overlap 520937 AAATTTATAATATAT CCTTT TGAG AAAGG TTTTGGTGTTACTAT rpoA 520838 - 521869 + | DNA-directed RNA polymerase rplQ 521888 - 522259 + | 50S ribosomal protein L17 BDU_507 522334 - 523875 + | hypothetical protein TERM 385 524065 - 524087 + GF 91 -10 -3.99324 | opp_overlap 524058 TAAAACAGGTGTGAA TGTGATTACT ACG GGTAATCACA TTTATGCTGATCCGA BDU_508 523844 - 524656 + | hypothetical protein tlyA 524637 - 525428 + | hemolysin BDU_510 526243 - 525425 - | hypothetical protein TERM 386 525680 - 525639 - G 95 -12 -3.20307 | gap 1, opp_overlap 525649, overlap 525637 525640 TTAATATGAGCAATA CCCTCATTAACACTCAAAT TTAAT ATTTGAGTGTTAAT-AGGA ATTAGGCTTAGAAAA TERM 387 525679 - 525640 - G 100 -13.3 -2.51702 | gap 1, opp_overlap 525649, overlap 525639 525637 TAATATGAGCAATAC CCTCATTAACACTCAAAT TTAAT ATTTGAGTGTTAAT-AGG AATTAGGCTTAGAAA TERM 388 525649 - 525671 + g 79 -9.3 -3.16742 | opp_overlap 525640 525639 525637 CAATACCCTCATTAA CACTCAAAT TTAAT ATTTGAGTG TTAATAGGAATTAGG BDU_511 526261 - 527583 + | GTP-binding protein BDU_512 527580 - 528833 + | hypothetical protein BDU_513 528839 - 529525 + | putative hydrolase TERM 389 529723 - 529746 + G 79 -9 -3.4678 | overlap 529724 GATCAATAATCTTGC TGTTGATATG GAAG CATATCAACG TTCTAGTATAGAAAT TERM 390 529724 - 529745 + G 81 -10.3 -2.67747 | overlap 529723 ATCAATAATCTTGCT GTTGATATG GAAG CATATCAAC GTTCTAGTATAGAAA TERM 391 530051 - 530035 - g 73 -5.2 -4.65969 | AACAAATAAGGAAAA TCTTGA ATCTA TCAAGA TTGAGAGTTGGGAAA TERM 392 530495 - 530529 + G 71 -7.4 -3.84808 | overlap 530486 TTAGTAGACAATGAG GTATTGTCTTTAAG TTCTGTT TTTAAGGACAATAC TTATTCTAGATTGAA TERM 393 536253 - 536243 - g 70 -5.4 -4.49389 | ATTGGAGAATTAAAA GACA TTG TGTC AGAATTATTAGCCAA BDU_514 529544 - 536629 + | p-512 protein pheS 536640 - 538187 + | phenylalanyl-tRNA synthetase alpha chain pheT 538180 - 539874 + | phenylalanyl-tRNA synthetase beta chain TERM 394 540903 - 540928 + G 71 -4.1 -5.05782 | GCTGCTGCTGAAGGG TTTTTGGCTTC TGTG GAAGTTAGAAA TTTTTTGGGATAAGT trxB 539964 - 540941 + | thioredoxin reductase yacO 541704 - 540970 - | rRNA methylase dnaJ-1 542806 - 541706 - | heat shock protein TERM 395 541897 - 541908 + g 73 -4.4 -5.11112 | GTTCATCATTTTCTG TTCC TTTT GGAA TTTTTATTGAAATTT TERM 396 542756 - 542784 + g 73 -7.5 -3.81287 | TTTTTTTATTTCATC TTTTGAGGCTC CTTTTGA GAGCCCCAAAA TTTCATAGTAATCTC dnaK-2 544704 - 542806 - | heat shock protein 70 TERM 397 543065 - 543075 + g 74 -4 -5.22289 | ATTTTCTCTCCATAT TCTT TTA AAGA TTTTTCTGTTTGATA grpE 545296 - 544748 - | chaperone protein GrpE TERM 398 545350 - 545364 + H 71 -2.9 -5.58209 | AATATTTTACAAATT TTTTC TTTAT GAAAA TTTTTTTAAATTTGA BDU_522 545660 - 547228 + | NH(3)-dependent NAD synthetase TERM 399 548464 - 548484 + G 100 -13.3 -4.21812 | ATTTAAGATTTGCAT CAGCAGGGG CAC CTCCTGCTG TTGTTTTGAGTGAAA BDU_523 547215 - 548804 + | Response regulator receiver (CheY) modulated Serine phosphatase TERM 400 548893 - 548920 + T 76 -8 -3.71991 | opp_overlap 548895 548898, overlap 548891 548890 548895 548898 CATTAAATGGGATGA TATAATTTCTAT TTTT ATAGAAATTATG TGTATTTTTCTTTAA TERM 401 548918 - 548895 - T 71 -8.4 -2.81966 | opp_overlap 548893 548891 548890 548895 548898, overlap 548898 TTAAATGGGATGATA TAATTTCTAT TTTT ATAGAAATTA TGTGTATTTTTCTTT TERM 402 548895 - 548918 + T 75 -8.4 -3.40971 | opp_overlap 548895 548898, overlap 548893 548891 548890 548898 TTAAATGGGATGATA TAATTTCTAT TTTT ATAGAAATTA TGTGTATTTTTCTTT BDU_524 549411 - 548956 - | hypothetical protein TERM 403 550532 - 550545 + G 80 -3.9 -5.71712 | overlap 550534 AAAGGAAGATGCGTA TCTTT TAGA AAAGA TTTTTTTATCTGAAA BDU_525 549519 - 551327 + | hypothetical protein TERM 404 551422 - 551444 + G 70 -6.4 -4.10453 | opp_overlap 551422 551429, overlap 551439 CAAATATTTTGTAAA CTTAAAACAA AAC TTGATTTAAG TTTTAGAGAGCTTTG BDU_526 551317 - 552111 + | pantothenate kinase BDU_527 552919 - 552089 - | hypothetical protein BDU_528 553511 - 552900 - | hypothetical protein BDU_529 554803 - 553514 - | hypothetical protein phnP 554964 - 555722 + | phnP protein TERM 405 556220 - 556240 + G 77 -6.1 -4.66537 | opp_overlap 556221 556224, overlap 556221 TTGTCCAATCCTAAG ACTAGCAGA GAA TCTGCTGGC TTTTATGTTGAAGAA TERM 406 556221 - 556239 + G 82 -9.6 -3.3944 | opp_overlap 556221 556224, overlap 556220 TGTCCAATCCTAAGA CTAGCAGA GAA TCTGCTGG CTTTTATGTTGAAGA exoA 555734 - 556498 + | exodeoxyribonuclease III TERM 407 557133 - 557148 + G 71 -2.6 -5.54907 | TATTGTAAAATTGTC TAAAGG GGAA CTTTTA TTTTTATTTTATGAA BDU_532 556522 - 557283 + | hypothetical protein TERM 408 559908 - 559892 - g 77 -5.3 -5.16841 | opp_overlap 559892 559892 TTATATTAAGAAAAA TATTATT AAA AATAATA ATATTGCTTCTGAGT BDU_533 557280 - 560105 + | zinc protease, putative BDU_534 561564 - 560128 - | hypothetical protein TERM 409 561590 - 561555 - G 81 -8 -4.35461 | gap 1, opp_overlap 561555 TTAACATCATTAAAA TTCTTTTCATTACA-TA CTA TATTATAATGAAAAGAA TGTGATAAATGAAAA TERM 410 561733 - 561749 + r 70 -8.7 -2.62616 | opp_overlap 561744 TCGAACCTACGACTC TCGCCTT AAA AGGGCGA TGCTCTACCAACTGA TERM 411 561894 - 561916 + r 71 -8.4 -3.03124 | overlap 561897 GACTCGAACCTGTGA CCAGCGGGTT AAG AATCCGCTGC TCTTACCACCTGAGC TERM 412 561897 - 561913 + r 70 -8.7 -2.74192 | overlap 561894 TCGAACCTGTGACCA GCGGGTT AAG AATCCGC TGCTCTTACCACCTG BDU_538 562660 - 561989 - | TPR domain protein BDU_539 562982 - 562626 - | hypothetical protein TERM 413 562998 - 563026 + r 100 -6.2 -5.80951 | opp_overlap 562998, overlap 562992 TGTTTCTCCTAAAAA TGAATGCTTA TTTTTATTT TAAGCATTCA TTTTTTATTTTACAT TERM 414 563026 - 562998 - R 76 -6.2 -4.56597 | opp_overlap 562992 562998 TGTTTCTCCTAAAAA TGAATGCTTA TTTTTATTT TAAGCATTCA TTTTTTATTTTACAT BDU_540 563766 - 563071 - | hypothetical protein fus-1 565860 - 563779 - | translation elongation factor G BDU_542 566397 - 566639 + | hypothetical protein BDU_543 566842 - 567927 + | hypothetical protein BDU_544 568049 - 568582 + | hypothetical protein BDU_545 568637 - 569305 + | hypothetical protein TERM 415 570535 - 570553 + G 82 -9 -3.72592 | opp_overlap 570532 ATTGGAACAAATGCT GTTTATCA TGA TGATAAAC TTCTTAGTAAACCTT prs 569473 - 570693 + | phosphoribosyl pyrophosphate synthetase xylB 570698 - 572062 + | xylulokinase BDU_548 572749 - 572045 - | hypothetical protein coaE 573345 - 572749 - | dephospho-CoA kinase polA 576092 - 573324 - | DNA polymerase I TERM 416 575216 - 575226 + g 87 -2.6 -6.25578 | TTGATTTTTGCATTG TATT TAT AATA TTTTTTTTCTTTAAT BDU_551 576493 - 576089 - | hypothetical protein flaJ 576905 - 576483 - | flagellar protein TERM 417 576519 - 576533 + g 80 -5.8 -5.1101 | opp_overlap 576521, overlap 576515 TAATTTCTTTTTAAT GATAAT ATT ATTATC TTTTTTAAGTAATGC cheY-1 577326 - 576916 - | chemotaxis response regulator TERM 418 578041 - 578023 - g 70 -3.2 -5.20216 | overlap 578015 578010 TATATTACCAAAAAA GATTTTTT GAA AATAAATC ATACATTAGATGATT lig 577489 - 579498 + | DNA ligase BDU_555 581786 - 579501 - | hypothetical protein TERM 419 580086 - 580110 + g 82 -8.1 -4.58283 | ATTTATTATTTTTTC TATTGAAAGTA AGT TATTTTCAATA TTTTTGAAGCCATTG TERM 420 582601 - 582625 + G 82 -8.9 -3.78679 | opp_overlap 582601 582599 TTTCTAAAGATAAGA TTATTATTAAT TCT ATTAATAATAA TTGTGTTAATATTTT TERM 421 582625 - 582601 - g 79 -8.9 -3.49232 | opp_overlap 582601, overlap 582599 TTTCTAAAGATAAGA TTATTATTAAT TCT ATTAATAATAA TTGTGTTAATATTTT BDU_556 582081 - 583949 + | hypothetical protein BDU_557 583936 - 584397 + | hypothetical protein TERM 422 584523 - 584492 - g 93 -12 -2.72436 | opp_overlap 584487 584493, overlap 584483 584488 584489 584512 TTATAATGAAATTGA TTTTCATAAAAATT CTGA AATTTTTATGAAAA ATGACTCTGATAGCT BDU_558 584394 - 585254 + | uncharacterized consevred protein ptsH-2 585414 - 585674 + | phosphocarrier protein HPr TERM 423 586160 - 586186 + G 73 -8.2 -3.41602 | GGTTAAGAGAGATGT GGTGTTAATT ACTGAAG AATTAACACC TTCTGATACAATGCA TERM 424 586225 - 586252 + G 85 -10 -3.4529 | TAAGTTATGTTAAGG GTTTTATCACCA CGGT TGGTGGTGAAAC TTCTCATGCTGCTAT TERM 425 586994 - 587018 + G 70 -8.6 -2.53641 | opp_overlap 586986, overlap 586993 587003 TATGATAGAAGTTCC TTCTGCTGCT TTATT AGCAGCTGAA CTTGCTGATAAGTTG ptsI 585675 - 587411 + | phosphoenolpyruvate-protein phosphatase crr 587415 - 587984 + | PTS system, glucose-specific IIA component TERM 426 587969 - 588027 + T 100 -7.1 -5.63504 | gap 1, opp_overlap 587981, overlap 587976 587981 TAAAGATATAGTTCT TAGAGTTA-AAAAGTAAGTTCGCATACT CATG AGTATGCGAACTTACTTTTATTTATATA TTTTTTTCTAACATT TERM 427 587976 - 588019 + T 100 -20 -4.44525 | opp_overlap 587981, overlap 587969 587981 ATAGTTCTTAGAGTT AAAAAGTAAGTTCGCATACT CATG AGTATGCGAACTTACTTTTA TTTATATATTTTTTT TERM 428 588014 - 587981 - T 100 -19.9 -4.70659 | opp_overlap 587976 587969 587981 TCTTAGAGTTAAAAA GTAAGTTCGCATACT CATG AGTATGCGAACTTAC TTTTATTTATATATT TERM 429 587981 - 588014 + T 100 -19.9 -5.08878 | opp_overlap 587981, overlap 587976 587969 TCTTAGAGTTAAAAA GTAAGTTCGCATACT CATG AGTATGCGAACTTAC TTTTATTTATATATT htpG 589868 - 588021 - | heat shock protein 90 gnd 589983 - 591377 + | phosphogluconate dehydrogenase, decarboxylating (gnd) BDU_564 591928 - 591392 - | hypothetical protein TERM 430 591830 - 591815 - G 70 -6.2 -4.09827 | opp_overlap 591817 CATAATATAATTAAA TATTGG ATTT CCAATA CTTCCACCAAATCCT BDU_565 592570 - 592052 - | hypothetical protein TERM 431 592746 - 592782 + r 100 -15.6 -4.52589 | opp_overlap 592754 GTATTGATTGTTTTA TTTATAAAGAGAAGTA ATTGA TACTTCTCTTTATAAA TTTTATGTAAACCAA TERM 432 592774 - 592754 - R 82 -8.4 -3.91897 | opp_overlap 592746 TGTTTTATTTATAAA GAGAAGTA ATTGA TACTTCTC TTTATAAATTTTATG BDU_566 593294 - 592785 - | hypothetical protein cheW-2 593633 - 594166 + | purine-binding chemotaxis protein BDU_568 594172 - 594492 + | hypothetical protein cheA-1 594516 - 596657 + | chemotaxis histidine kinase TERM 433 596974 - 596984 + G 75 -5.4 -4.81852 | GAGAATGAAGTTTAT CCAA AAT TTGG TTTTCTTGATTCTAA cheB-2 596719 - 597870 + | protein-glutamate methylesterase TERM 434 599220 - 599208 - g 70 -6.3 -4.20883 | opp_overlap 599208 599207 599212 GAAAAAGTTGTAAAA GATTG TGA CAATC GCTTTTATATTGAAA BDU_571 597849 - 599642 + | hypothetical protein cheY-2 599679 - 600053 + | chemotaxis response regulator TERM 435 600911 - 600923 + G 71 -2.7 -5.40072 | CTTTAGGAATAAGAA GTAAT TTT ATTGC TTTTTTTGAAGACAG BDU_573 600088 - 601431 + | hypothetical protein smbA 602219 - 601530 - | uridylate kinase TERM 436 602316 - 602300 - H 73 -6.7 -4.07885 | opp_overlap 602295 602300 CAGGTTGTTGGAAAA TATGATT TAA AATCATA TTACCTTATTAACTA lgtD 602436 - 603500 + | glycosyl transferase TERM 437 603992 - 604003 + G 72 -5.8 -4.51363 | CTTTCTCTATTGCTA CAGG CGTT CCTG TTTTGATATTTGATG BDU_577 603562 - 604383 + | ABC transporter, ATP-binding protein BDU_578 604376 - 605257 + | hypothetical protein pyrG 605485 - 607140 + | CTP synthase BDU_580 607203 - 607808 + | hypothetical protein TERM 438 607973 - 607949 - g 100 -6.5 -5.75342 | TTTTTGTAAAAAAAA GTCTTCTACAT CTG ATGTTAAAGAC AATTCTTTCAATGAT mcp-1 607917 - 609092 + | methyl-accepting chemotaxis protein TERM 439 609691 - 609709 + G 73 -9 -2.75536 | opp_overlap 609695, overlap 609690 609695 ATAGATTTGATGATG CAAAGAAT GAG ATTCTTTG GTTTAAAAATACTTT TERM 440 611072 - 611056 - g 72 -6.7 -4.21631 | AAGGTATGCAACAAA TTTTGAA AGA TTCAAAA CCCGATAATATTGAA TERM 441 611827 - 611808 - g 74 -2.2 -5.72622 | opp_overlap 611816 GTTATAAATAAAAAA TTTCTTGA GGCT TCAATAAA GTCTGGTCTTTTTGA dnaE 609216 - 612650 + | DNA polymerase III, subunit alpha TERM 442 612963 - 612974 + G 85 -3 -5.94597 | TGGAAGCTTGGGGAA TACT TAGA AGTA TTTTTTTTGCTCTTA BDU_583 612662 - 613234 + | hypothetical protein recG 613244 - 615307 + | DNA recombinase BDU_585 616152 - 615310 - | carboxypeptidase, putative TERM 443 616879 - 616890 + G 77 -3 -5.64328 | ATACATTTTTTATTA GTAT TGCA ATAC TTTTATTTTTTTCTT BDU_586 616593 - 617936 + | hypothetical protein TERM 444 618824 - 618838 + G 71 -7.2 -3.86311 | overlap 618819 GATTACTGTTTTTGT TGCAAA TTA TTTGCA TTTAAATTTGAATAT murD 617961 - 619316 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase femA 620362 - 619313 - | FemA protein TERM 445 619959 - 619969 + g 71 -4 -5.16472 | overlap 619944 619942 TTTGATGGTTGTATA TCAT CAA ATGA TTTTTTGAGATTTTT metG 622564 - 620384 - | methionyl-tRNA synthetase TERM 446 621223 - 621240 + g 81 -7.1 -4.65933 | ATATTTTGTTACCTA TTCTTGA GATA TCAAGAA TTTCTTTTAAAGCTG TERM 447 623363 - 623378 + G 86 -9 -4.29656 | opp_overlap 623363 AATATTTTTGATCAA GAGCCA AAGG TGGCTC TTTTAAGCTTTTCTA TERM 448 623378 - 623363 - g 78 -9 -3.15427 | opp_overlap 623363 AATATTTTTGATCAA GAGCCA AAGG TGGCTC TTTTAAGCTTTTCTA pta 622676 - 623746 + | phosphate acetyltransferase ksgA 624553 - 623729 - | dimethyladenosine transferase BDU_592 625861 - 624584 - | competence locus E, putative BDU_593 625980 - 626705 + | hypothetical protein BDU_594 626715 - 628646 + | long-chain-fatty-acid CoA ligase argS 630435 - 628678 - | arginyl-tRNA synthetase TERM 449 630365 - 630381 + g 70 -3 -5.22104 | TCTAATTTGATATTT GAACTT AATGC GAGTTC TTTTATTGTTTTTTG BDU_596 631006 - 630428 - | hypothetical protein mcp-2 633238 - 631022 - | methyl-accepting chemotaxis protein TERM 450 632968 - 632978 + g 71 -4 -5.10765 | TAGTTATGATATTTT TGAA ATG TTCA TTTTGTTGTTTATTT TERM 451 634749 - 634773 + G 70 -8.7 -2.67709 | opp_overlap 634749, overlap 634748 TGATGGTATAGGAGA TGCTTTTTCTA AAT TTGAAAAAGCA GTTATGAATATTTTA TERM 452 634773 - 634749 - g 71 -8.7 -2.85999 | opp_overlap 634749 634748 TGATGGTATAGGAGA TGCTTTTTCTA AAT TTGAAAAAGCA GTTATGAATATTTTA mcp-3 633394 - 635634 + | methyl-accepting chemotaxis protein murB 636589 - 635636 - | UDP-N-acetylmuramate dehydrogenase TERM 453 636087 - 636102 + g 74 -6.2 -4.60143 | ATAAAATTTCCATTT TCATCT ATAA AGATGA TTTTATCTAATATGT TERM 454 637051 - 637065 + G 79 -3.6 -5.58074 | TTGTGAGATTGGCAA GTTTTT TAC AAAAGC TTTTTTTGATGATTG cysS 636743 - 638200 + | cysteinyl-tRNA synthetase TERM 455 638567 - 638588 + G 95 -5.9 -5.75342 | opp_overlap 638566 GTGCCAATAAAACTT GAAAAAGAC AATA GTCCTTTTC TTTTTTTTGAGGAAA TERM 456 638953 - 638966 + G 74 -2.5 -5.65927 | opp_overlap 638953 TGAAATATTAGATAA TATTA ATTT TAATA TTTTTTATTTAAGTC TERM 457 639623 - 639605 - g 73 -9 -2.70766 | overlap 639604 639607 AATATGTCAGAGAAT TATATCCA TTA TGGATATA GAGAAGATTATGATA BDU_601 638204 - 639757 + | hypothetical protein glyA 639747 - 641000 + | serine hydroxymethyltransferase dnaJ 641015 - 641779 + | chaperone protein DnaJ TERM 458 641836 - 641867 + T 100 -14.8 -6.09888 | opp_overlap 641836, overlap 641819 ATTTTATGGGTAAAA TTGTTTAAAGAGTA AATT TACTCTTTAAACAA TTTTTTTTATTAAGA TERM 459 641867 - 641836 - T 100 -14.8 -4.11394 | opp_overlap 641819 641836 ATTTTATGGGTAAAA TTGTTTAAAGAGTA AATT TACTCTTTAAACAA TTTTTTTTATTAAGA BDU_604 643715 - 641877 - | membrane-associated protein P66 TERM 460 642414 - 642425 + g 86 -5.8 -5.5208 | opp_overlap 642414 ATAATTAATTCCAAA TCCG ATGC CGGA TTTTTTATCTTGTGC TERM 461 643873 - 643905 + rH 86 -10.8 -3.43604 | opp_overlap 643877 643880, overlap 643877 TATGTATAGATTATT CAAATAAGACCAAC TATTT GTTAGTCTTATTTG TTAATATTATGATAT TERM 462 643901 - 643877 - RH 76 -8 -3.70863 | opp_overlap 643873 643877, overlap 643880 TATAGATTATTCAAA TAAGACCAAC TATTT GTTAGTCTTA TTTGTTAATATTATG lctP 645474 - 643939 - | L-lactate permease TERM 463 644067 - 644087 + gH 73 -9.1 -2.51702 | overlap 644066 644069 CGATTGTTATGTTTT GAGGAGAAA TCA TTTTTCCTC CTGTTGCTCCTGTTG TERM 464 644605 - 644621 + gH 80 -6.5 -4.86773 | overlap 644606 AATATATGGCATGCA GGCAAGG AAT CCTTGCA TTTTTGATACTTTTA TERM 465 644606 - 644620 + gH 85 -10 -3.50437 | overlap 644605 ATATATGGCATGCAG GCAAGG AAT CCTTGC ATTTTTGATACTTTT TERM 466 645188 - 645200 + gH 81 -7.7 -4.60797 | overlap 645181 ATTTGCATGTCATTT TGGCT TTC AGCCA TTTTATATGTAAAAA TERM 467 645491 - 645528 + GH 70 -5.3 -4.58563 | gap 1, opp_overlap 645505 645507, overlap 645488 645523 TAATTCTATAACAAA TTTTTATGCAAT-AATAT ACA ATATTTATTGTATGAAAA TTATTTTTATCATTA dacA 645444 - 646445 + | serine-type D-Ala-D-Ala carboxypeptidase BDU_607 646699 - 647202 + | chemotaxis protein CheD pepD 647381 - 648802 + | aminoacyl-histidine dipeptidase tig 649333 - 650679 + | trigger factor clpP-1 650679 - 651278 + | ATP-dependent Clp protease proteolytic component clpX 651301 - 652590 + | ATP-dependent Clp protease, subunit X lon-2 652535 - 654973 + | ATP-dependent protease LA TERM 468 655179 - 655146 - T 73 -3.9 -5.36018 | opp_overlap 655148 655152, overlap 655152 ACTAAAAAAAAGAAA GGTAAATAGCATGAC TAGA GTCATGCTATTTGTT ACATTACGCTCTCTT TERM 469 655148 - 655177 + T 100 -13.1 -3.1875 | opp_overlap 655146 655152, overlap 655152 TAAAAAAAAGAAAGG TAAATAGCATGAC TAGA GTCATGCTATTTG TTACATTACGCTCTC TERM 470 655152 - 655173 + T 100 -11.7 -4.2528 | opp_overlap 655146 655152, overlap 655148 AAAAAGAAAGGTAAA TAGCATGAC TAGA GTCATGCTA TTTGTTACATTACGC TERM 471 655173 - 655152 - T 100 -11.7 -4.00308 | opp_overlap 655152 655148, overlap 655146 AAAAAGAAAGGTAAA TAGCATGAC TAGA GTCATGCTA TTTGTTACATTACGC rpsD 655809 - 655183 - | 30S ribosomal protein S4 BDU_619 657225 - 655957 - | hypothetical protein BDU_620 657327 - 657710 + | hypothetical protein cdd 658201 - 657746 - | cytidine deaminase BDU_622 658301 - 659293 + | hypothetical protein BDU_623 660938 - 659283 - | beta-glucosidase, putative TERM 472 659825 - 659837 + g 70 -4.9 -4.79955 | TGTTTCTTTTTTCTT TTAGA TAT TCTAA TTTTATTCTAAGTAT thiJ 661240 - 661785 + | 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein TERM 473 661784 - 661770 - T 81 -7.2 -4.63527 | TGAGGATGTTAAAAA TAAAGC TTT GCTTTA ATATGAGATATGCAA ackA 663105 - 661879 - | acetate kinase mfd 666493 - 663116 - | transcription-repair coupling factor TERM 474 666268 - 666284 + g 73 -4.5 -5.15526 | CGTATATTTGATCTG TGATTTG TGT TAAATCA TTTTTAATTTTATCT BDU_628 666592 - 667554 + | hypothetical protein TERM 475 667689 - 667652 - gT 77 -9.5 -2.9162 | overlap 667654 667656 GAAGTTGTCAAAGGA GATACTTTATATTCAAT TTCT ATTAAATATAAGGTATC AGTAAAAGAACTTAA BDU_629 667490 - 669589 + | N-acetylmuramoyl-L-alanine amidase, putative TERM 476 669725 - 669736 + T 77 -2.2 -5.88565 | CCGGAGGTTCAAGTC CTTC TGGG GGAG TTTTTTTATTGTAAA pepX 671547 - 670279 - | vacuolar X-prolyl dipeptidyl aminopeptidase I TERM 477 671536 - 671546 + g 70 -5.4 -4.57581 | TGATATATCTAATGT TGCA TCA TGCA TTTGTTCTTTCCCCT TERM 478 671990 - 671970 - g 74 -8.4 -3.23174 | opp_overlap 671978, overlap 671969 671978 ATAGTTTGATAAAAG TTGCAAGA GATTA TCTTGCAA AAGAAAATCTGCCTT BDU_632 671651 - 672376 + | hypothetical protein TERM 479 672435 - 672408 - T 73 -8.6 -3.19634 | opp_overlap 672407 672410, overlap 672407 672401 672410 ATTTCAAATATAAAT GAGAGATAAGAA TTAT TTCTTATCTCTT TTCATAAATCCTATT TERM 480 672433 - 672410 - T 86 -11.2 -3.15228 | opp_overlap 672407 672410, overlap 672408 672407 672401 TTCAAATATAAATGA GAGATAAGAA TTAT TTCTTATCTC TTTTCATAAATCCTA TERM 481 672410 - 672433 + T 95 -11.2 -4.28994 | opp_overlap 672410 672408 672407 672401, overlap 672407 TTCAAATATAAATGA GAGATAAGAA TTAT TTCTTATCTC TTTTCATAAATCCTA fruA-2 674279 - 672420 - | PTS system, fructose-specific IIABC component TERM 482 674358 - 674330 - H 71 -8.5 -3.11484 | opp_overlap 674328 674330 674338, overlap 674328 674325 ATAATAGAAATTATA TATTACAATTATA TCA TATAATTATAATA TGTTAAGTTGTTTAA TERM 483 674417 - 674359 - H 100 -17.5 -3.36715 | gap 1, opp_overlap 674328 674365, overlap 674328 674325 674360 CATATAATTATAATA TGTTAAGTTGTTTAATTGTATTACTTAA GTAA TTAAGTAATACAATTAAACAACTTAAT- AATAAAGGAGACTTA TERM 484 674417 - 674360 - H 100 -23.5 -2.61306 | opp_overlap 674365, overlap 674325 674359 ATATAATTATAATAT GTTAAGTTGTTTAATTGTATTACTTAA GTAA TTAAGTAATACAATTAAACAACTTAAT AATAAAGGAGACTTA TERM 485 674365 - 674412 + H 100 -23.4 -3.21099 | opp_overlap 674359 674360 ATTATAATATGTTAA GTTGTTTAATTGTATTACTTAA GTAA TTAAGTAATACAATTAAACAAC TTAATAATAAAGGAG fruK 674434 - 675351 + | 1-phosphofructokinase recD 677370 - 675544 - | exodeoxyribonuclease V, alpha chain TERM 486 676100 - 676110 + g 78 -2.6 -5.82281 | TTGAAATTGGGAATG TTAT TGT ATAA TTTTTTTGTATGTTT TERM 487 676430 - 676446 + g 82 -9.5 -3.40593 | opp_overlap 676442, overlap 676434 676435 676440 CTTAAAAAGGTATTT GCATCTA TCA TAGATGC TTCATCTATTATAAT recB 680822 - 677379 - | exodeoxyribonuclease V, beta chain TERM 488 678797 - 678812 + g 72 -4.8 -4.84353 | GGCTTGATTCATAGT TTTGAA GTTC TTCAAA TTTATTTTCATTTAT TERM 489 679446 - 679468 + g 100 -10.8 -4.6645 | AGGTTCAGTTTGCAG TTGAACAAAT TCT ATTTGTTCAA TTTTATCTGTGTGTG recC 684041 - 680829 - | exodeoxyribonuclease V, gamma chain TERM 490 683791 - 683801 + gr 78 -2.6 -5.88197 | overlap 683796 AAAAGTAAAGTATTG TTTT CTA AAAA TTTTTTTATATTTGG BDU_639 685486 - 684011 - | nicotinate phosphoribosyltransferase TERM 491 684323 - 684336 + gH 91 -2.5 -6.32017 | overlap 684332 GATTGTAAATTGTTT TTTTA AATT TAAAA TTTTTTTTATTTCTT TERM 492 685234 - 685252 + gH 81 -5.4 -5.252 | TATTTAATTTAAATG TTTTTAGA TAT TCTAAGAA TTTTTTATCAAAATA zwf 685657 - 687090 + | glucose-6-phosphate 1-dehydrogenase TERM 493 688049 - 688036 - g 70 -5.3 -4.56358 | GATAGTCATATAAAA CCAAA CTTT TTTGG GCTTGTTCCTTTTCT nhaC-2 688012 - 689337 + | Na+/H+ antiporter TERM 494 689366 - 689344 - T 100 -13.6 -3.27704 | opp_overlap 689344 689346, overlap 689339 AGTTTTTAAATGTAA TAGGCACTTT TTT AAAGTGCCTA TGTTAAGATGATATT TERM 495 689344 - 689366 + T 100 -13.6 -3.07787 | opp_overlap 689344 689339, overlap 689346 AGTTTTTAAATGTAA TAGGCACTTT TTT AAAGTGCCTA TGTTAAGATGATATT TERM 496 689346 - 689364 + T 90 -11.8 -3.09289 | opp_overlap 689344 689339, overlap 689344 TTTTTAAATGTAATA GGCACTTT TTT AAAGTGCC TATGTTAAGATGATA potD 690424 - 689369 - | spermidine/putrescine ABC transporter, binding periplasmic protein TERM 497 689815 - 689828 + g 70 -3.1 -5.25656 | overlap 689812 AGAAATAGCCTACTA CTAAG GAGA CTTGG TTTTTTAGTAGTTTT potC 691227 - 690436 - | spermidine/putrescine ABC transporter, permease protein potB 692040 - 691237 - | spermidine/putrescine ABC transporter, permease protein potA 693089 - 692046 - | spermidine/putrescine ABC transporter, ATP-binding protein TERM 498 692750 - 692765 + g 84 -3.4 -5.7946 | TGACTTTTTCTTTGA TTAAAT TTTT ATTTAA TTTTTTTATTCGCAG BDU_646 694051 - 693176 - | conserved hypothetical GTP-binding protein TERM 499 693659 - 693669 + g 74 -2.6 -5.72622 | TGGGACTCCAATTAC TAAA ACT TTTA TTTTTTCTTTATAAG TERM 500 694741 - 694762 + G 70 -5.9 -4.27584 | opp_overlap 694739 AAGGCAAAATTGATA CTCCTCTTA AGGC TAAGAGAAG TTTTGAGTTGGGAGT BDU_647 694203 - 694868 + | N-acylglucosamine-6-phosphate 2-epimerase TERM 501 694925 - 694948 + G 75 -6 -4.69326 | opp_overlap 694929 GGGGAGATTTTTTCA GAATGCCCAA AAAT TTGGTCGTTC TTTTATGTTGCCTAT TERM 502 694973 - 694985 + G 78 -7.7 -4.42235 | overlap 694971 GCCTATTGCCATTCT TCCTG CGG CAGGA TTATTTTTAGGAATT TERM 503 695039 - 695054 + G 71 -2.6 -5.4833 | AACTATTAGTACTTA TACATT TTTA GATGTA TTTTTTCTTCAATCA TERM 504 695381 - 695396 + G 82 -5.4 -5.42862 | overlap 695382 TAATAAAGTTGAATT TCCAAG AGTA CTTGGG TTTTTTTCAGGATCT ptsG 694908 - 696467 + | PTS system, glucose-specific IIBC component TERM 505 696476 - 696503 + T 100 -7.9 -6.18768 | gap 1, opp_overlap 696472 AAATTAAAATTTTAA GCAAGTGTATGT TTTTT ACAT-CACTTGC TTTTTTTTATGTTTT BDU_649 697482 - 696496 - | hypothetical protein TERM 506 697258 - 697271 + g 70 -2.3 -5.52347 | ACCGTGAATATATAC CACTG CATA CTGTG TTTTTTCCTTTTCTT TERM 507 697474 - 697458 - G 78 -2.4 -5.77734 | opp_overlap 697458 AAATAAAAATAAAAA TAAAAA TTGCG TTTTTA ATGTTCATATATTTT fur 698013 - 697495 - | ferric uptake regulation protein BDU_651 699799 - 698105 - | serine/threonine kinase, putative TERM 508 699008 - 698996 - G 70 -4.9 -4.68593 | TTTATTAGTTAAAAA TTCTT TTA AAGAA GCTTCATTTATTTGA TERM 509 699739 - 699725 - G 71 -7.2 -3.75479 | opp_overlap 699721 TAAAATGGAATATAA TTTGCT TTC AGCAAA TGAAGTTATTGAAAC TERM 510 699760 - 699744 - G 74 -8.1 -3.56704 | CTTTCAGCAAATGAA GTTATTG AAA CAATAAC AATATAAATTTTTGA TERM 511 700512 - 700501 - g 73 -4.4 -5.09173 | CAATAGGTGAAAAAA TTGC AGAG GCAA TGGACAGAGTTGGCA TERM 512 701124 - 701106 - g 91 -6.8 -5.40464 | TATGACAAAGAAAAA TTACAAGA ACG TCTTGCAA AACTTGTTGGTGGTG groEL 700020 - 701654 + | heat shock protein TERM 513 701843 - 701858 + G 78 -7.6 -4.37092 | opp_overlap 701843 701842 TGGATTTTATAGAAG CGCTTT TAGT AAAGCG TTTTATAGGAAAGAT TERM 514 701940 - 701957 + G 93 -11.3 -3.65754 | opp_overlap 701940, overlap 701954 ACTTATAGTAGAAAA GAGGAGC TTGA GCTCCTC TTTGGGGTAATTTAT TERM 515 701957 - 701940 - g 100 -11.3 -4.51378 | opp_overlap 701940 701954 ACTTATAGTAGAAAA GAGGAGC TTGA GCTCCTC TTTGGGGTAATTTAT BDU_653 701715 - 702011 + | hypothetical protein TERM 516 702061 - 702074 + G 70 -6.7 -4.06335 | TTAGTCATAGTAGTA GCTTC TTTA GAAGC TTATTAGTTTTTGTT yajC 702027 - 702350 + | preprotein translocase YajC subunit secD 702431 - 704194 + | protein-export membrane protein TERM 517 704227 - 704217 - g 70 -5.4 -4.5081 | opp_overlap 704217 704215 AAATATGGAAATAAA GCTA TTA TAGC TAGTTTTTGTATGAT secF 704178 - 705074 + | protein-export membrane protein BDU_657 705098 - 706249 + | hypothetical protein TERM 518 706228 - 706251 + T 100 -6.2 -5.62045 | opp_overlap 706228 GCAAAGTTTGAAAAA TTTTGAACAA TTAT TTGTTTAAAA TTTTTTATTATATAT dnaJ-2 707094 - 706246 - | heat shock protein TERM 519 706531 - 706543 + g 72 -4.9 -4.92314 | overlap 706539 TTCTAAATTTCGATC CTTTA GTG TAAAG TTTTTATAACTTGAT TERM 520 707970 - 707986 + G 95 -7.3 -5.38054 | overlap 707962 TTTAGGTCTTGGCTT GCAAGCT GTT AGTTTGC TTTTTGTTTCTGAGA BDU_659 707215 - 708354 + | HemN-related protein rpi 709027 - 708341 - | ribose 5-phosphate isomerase A gpmA 709250 - 710002 + | phosphoglycerate mutase TERM 521 710019 - 710060 + T 83 -11.3 -2.66098 | opp_overlap 710025, overlap 710022 710025 AAACAGAGCAAACGT TAATAAGAAGAGATTAT TGATAAAT ATGATCTCTTCTTATTA TAAATTTCAAATATT TERM 522 710022 - 710057 + T 75 -8.6 -3.47617 | opp_overlap 710025, overlap 710019 710025 CAGAGCAAACGTTAA TAAGAAGAGATTAT TGATAAAT ATGATCTCTTCTTA TTATAAATTTCAAAT lysS 711686 - 710088 - | lysyl-tRNA synthetase era 712608 - 711736 - | GTP-binding protein BDU_664 712705 - 713052 + | hypothetical protein BDU_665 713065 - 713472 + | hypothetical protein BDU_666 713469 - 713903 + | hypothetical protein BDU_667 714564 - 713905 - | hypothetical protein TERM 523 714369 - 714379 + g 71 -4 -5.08878 | overlap 714373 TAATGGTTTTTGATA TGAT GAA ATCA TTTTCTTTATCTATT TERM 524 714441 - 714451 + g 80 -5.4 -5.19879 | TTTTAATTCTTTTGT CGTA AGT TACG TTTTTATCTTTACAA BDU_668 714610 - 715569 + | hypothetical protein TERM 525 715825 - 715845 + GF 71 -7.7 -3.58533 | GAAAGCTTTGATGCA GATTGAAAA TTA TTTTCGATC TTTGCAAAGTTATAG BDU_669 715532 - 716557 + | N-acetylmuramoyl-L-alanine amidase TERM 526 716706 - 716721 + G 70 -6.2 -4.08189 | opp_overlap 716705 716706 TGTAATTATGATAAT CTTTTC TTTA GAAAAG TATTTTATTTCCATT BDU_670 716538 - 717086 + | hypothetical protein flaA 717163 - 718212 + | flagellar filament outer layer protein TERM 527 718988 - 719004 + G 71 -7.3 -3.74526 | opp_overlap 718978 718985 718988, overlap 718978 GAAAAGATAAATTTA TCTGATG TTG CGTCAGA TTATTCAATTAATGA cheA-2 718283 - 720874 + | chemotaxis histidine kinase TERM 528 722066 - 722094 + G 74 -6.1 -4.59511 | CAGATGCCATTTTAT CAGAATTTCCAGA AAA TTTGGGAATTGTG TTTTTAAGAGATATT cheW-3 720880 - 722277 + | purine-binding chemotaxis protein CheW cheX 722289 - 722774 + | chemotaxis operon protein cheY-3 722823 - 723263 + | chemotaxis response regulator BDU_676 723791 - 723276 - | hypothetical protein BDU_677 724837 - 723788 - | hypothetical protein BDU_678 725694 - 724831 - | hypothetical protein gph 726377 - 725691 - | phosphoglycolate phosphatase TERM 529 726009 - 726042 + g 74 -6.9 -4.42765 | overlap 726010 TTCTTCATGGTTTTT ATTACTTAAAATTCC AATA GGGATTTTAAGTGAG TTTAGTTTTTTCAAA TERM 530 726010 - 726041 + g 86 -10.4 -3.24575 | overlap 726009 TCTTCATGGTTTTTA TTACTTAAAATTCC AATA GGGATTTTAAGTGA GTTTAGTTTTTTCAA mglA 726561 - 728144 + | ribose/galactose ABC transporter, ATP-binding protein rbsC-1 728148 - 729296 + | ribose/galactose ABC transporter, permease protein rbsC-2 729268 - 730194 + | ribose/galactose ABC transporter, permease protein mcp-4 730362 - 732572 + | methyl-accepting chemotaxis protein mcp-5 732602 - 734509 + | methyl-accepting chemotaxis protein TERM 531 734506 - 734542 + T 71 -6.8 -3.93038 | opp_overlap 734507 734511, overlap 734507 734511 734538 TTTTAAGATTGATCA ATAAACCTATAGAAAT AAATG ATTACTATAGGTTTAA TTTGATATTAAAATA TERM 532 734541 - 734507 - T 81 -10.3 -3.2218 | opp_overlap 734506 734507 734511 734538, overlap 734511 TTTAAGATTGATCAA TAAACCTATAGAAAT AAATG ATTACTATAGGTTTA ATTTGATATTAAAAT TERM 533 734507 - 734541 + T 79 -10.3 -2.95341 | opp_overlap 734507 734511, overlap 734506 734511 734538 TTTAAGATTGATCAA TAAACCTATAGAAAT AAATG ATTACTATAGGTTTA ATTTGATATTAAAAT TERM 534 734511 - 734537 + T 73 -6.7 -4.14345 | opp_overlap 734507 734511, overlap 734507 734506 AGATTGATCAATAAA CCTATAGAAAT AAATG ATTACTATAGG TTTAATTTGATATTA TERM 535 734537 - 734511 - T 74 -6.7 -4.26202 | opp_overlap 734511 734507 734506, overlap 734507 AGATTGATCAATAAA CCTATAGAAAT AAATG ATTACTATAGG TTTAATTTGATATTA BDU_685 735629 - 734565 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 536 735037 - 735057 + g 78 -9.8 -2.73085 | overlap 735036 735034 TTATATTTGATTTTT CCAAGGAA ACAAA TTCCTTGG CTATCTTTTCTATTT TERM 537 736106 - 736120 + GH 93 -10 -4.47183 | AAGCTCAGCATGCTT GTGCAG GGA CTGCAC TTTCTTTGCATAGTG TERM 538 736839 - 736856 + GH 75 -3.5 -5.42259 | AAGGCACAATGCAAA TTTTGAT GAAT ATCGAAA TTTTTTTGAAAATAA BDU_686 735727 - 736953 + | 3-hydroxy-3-methylglutaryl-CoA synthase BDU_687 736922 - 738001 + | isopentenyl-diphosphate delta-isomerase mvaA 737991 - 739241 + | 3-hydroxy-3-methylglutaryl-CoA reductase mvaD 739243 - 740184 + | mevalonate pyrophosphate decarboxylase TERM 539 740555 - 740583 + G 73 -8.5 -3.1352 | opp_overlap 740561 740573, overlap 740553 740552 740561 AATTTTAAATGGTAA TAAAAATTTTATT AAA GATAAAATTTTTA TGTATTGCCTTGAAG BDU_690 740172 - 741113 + | phosphomevalonate kinase, putative TERM 540 741746 - 741779 + G 71 -7.7 -3.5256 | gap 1, overlap 741744 TAAGCGAGATATTGA TTTGTTGGCAAATAAT ATT AATAT-TGCCAACAAA TATTTAAATTCTTTA mvaK 741114 - 742007 + | mevalonate kinase BDU_693 742711 - 742259 - | hypothetical protein napA_2 742781 - 743284 + | neutrophil activating protein TERM 541 743408 - 743389 - f 72 -6.5 -4.25681 | opp_overlap 743389 ATTTAATTGAATAAA GCTATAG CACGAT CTATAGC TTTTTAGTGTTTGAG TERM 542 743389 - 743408 + F 82 -6.5 -4.93696 | opp_overlap 743389 ATTTAATTGAATAAA GCTATAG CACGAT CTATAGC TTTTTAGTGTTTGAG TERM 543 743767 - 743751 - g 77 -9.5 -2.79188 | overlap 743748 GATGGAATTCAAGCA CAAACTG AAA CAGTTTG GAAACAGGCATCAAA fus-2 743415 - 745439 + | translation elongation factor G TERM 544 745672 - 745682 + F 81 -2.6 -6.09196 | TTTGATATTATGTCT TATT ATT AATA TTTTTTTATTTTAAA xylR-1 745716 - 746924 + | xylose operon regulatory protein TERM 545 746910 - 746931 + F 82 -3.1 -5.84432 | TTTTATTTGACAGGG GGAGATATT GATT AATATTTTC TTTTTTTGTATTGTA ffh 746984 - 748333 + | signal recognition particle protein rpsP 748330 - 748581 + | 30S ribosomal protein S16 BDU_699 748591 - 748839 + | hypothetical protein rimM 748843 - 749343 + | 16S rRNA processing protein RimM trmD 749340 - 750062 + | tRNA-(guanine-N1)-methyltransferase rplS 750037 - 750405 + | 50S ribosomal protein L19 TERM 546 750708 - 750727 + F 72 -3 -5.38398 | CTATTTCTTTTCGAT TAAAAAAG ATGA TTTTTTTA TTTTTATCTTTTTAT BDU_703 751336 - 751896 + | hypothetical protein kdtB 751899 - 752396 + | pantetheine-phosphate adenylyltransferase TERM 547 752389 - 752418 + F 72 -8.9 -2.51381 | opp_overlap 752388 752389 752391, overlap 752384 752378 752391 AATTTATTGACAAAT TATCTTGATAATA TATA TATTATTAAGATA CGTTTGTTGATGTTT TERM 548 752527 - 752509 - g 71 -7.5 -3.57406 | opp_overlap 752509 752508 752521, overlap 752507 752521 GGCGCAGTATAAATA TGAGGAA AAAAA TTCCTCA ATTTCAGGAATGTTC TERM 549 752537 - 752521 - g 79 -3.7 -5.56568 | opp_overlap 752509 752508 752521, overlap 752509 752507 ATATGAGGAAAAAAA TTCCTCA ATT TCAGGAA TGTTCAAATTGCGGT rpmF 752448 - 752630 + | 50S ribosomal protein L32 BDU_706 752632 - 752895 + | acyl carrier protein TERM 550 753325 - 753349 + G 72 -5.7 -4.4648 | overlap 753326 753328 753345 GTGCACTTTATCTTG ATGGGGGCTTT TCA AAAGCCTCTAC TTTTGTGGTAGAACT TERM 551 753326 - 753348 + G 78 -9.2 -3.27406 | overlap 753325 753328 753345 TGCACTTTATCTTGA TGGGGGCTTT TCA AAAGCCTCTA CTTTTGTGGTAGAAC TERM 552 753328 - 753346 + G 79 -9.6 -3.20028 | overlap 753326 753325 753345 CACTTTATCTTGATG GGGGCTTT TCA AAAGCCTC TACTTTTGTGGTAGA rnc 752901 - 753632 + | ribonuclease III papS 754902 - 753604 - | tRNA nucleotidyltransferase (CCA-adding enzyme) TERM 553 753635 - 753647 + g 72 -4.9 -4.82212 | TATTGATCTTTAATC TTTTG AAG CAAAA TTTCTTTCTTATTTA TERM 554 754068 - 754109 + g 86 -2 -6.15536 | gap 1, opp_overlap 754068 754069 754072, overlap 754069 754073 754078 TTATAGTAAAAATAA CTATTGCTTTTAAATAAAA TTTAT TTTTATTTAAAAG-AGTAA TTTTTTTTATTAATT TERM 555 754078 - 754090 + g 72 -3.5 -5.27335 | opp_overlap 754072 754069 754068, overlap 754073 754069 754068 AATAACTATTGCTTT TAAAT AAA ATTTA TTTTTATTTAAAAGA TERM 556 754653 - 754671 + g 77 -7.6 -4.20354 | opp_overlap 754657, overlap 754644 754657 TTTGTATATTTTTTG GAAATAAT TTC ATTATTTC TTTTGGAGTTGCATT BDU_709 754951 - 756720 + | hypothetical protein TERM 557 757016 - 757030 + G 70 -2.9 -5.1963 | TTATTTGTTTTTGTT CTTTT TTTAT AAAAG TTTTTCTTGATTAGG BDU_710 756727 - 757044 + | hypothetical protein TERM 558 757162 - 757146 - f 70 -8.7 -2.63715 | opp_overlap 757161, overlap 757160 AGTCAGGCCAGAGCA GCGGTCT TGT AAACCGC TGGCCGTCGGTTCGA TERM 559 757161 - 757191 + F 86 -9.6 -3.86346 | opp_overlap 757146 757160 GCGGTCTTGTAAACC GCTGGCCGTCGGTT CGA ATCCGACAGTCGGC TTTATGGGGCGGTAC TERM 560 757512 - 757538 + G 74 -3.8 -5.36364 | overlap 757513 757518 GATTTTGTATTCTTA TGGTAATAAAAA AGA TTTTTATTTCCC TTTTTGTGTTTTTGC TERM 561 757513 - 757537 + G 71 -7.3 -3.79378 | overlap 757512 757518 ATTTTGTATTCTTAT GGTAATAAAAA AGA TTTTTATTTCC CTTTTTGTGTTTTTG TERM 562 758415 - 758434 + G 78 -4.4 -5.55769 | opp_overlap 758424 CAGCAGCCTTTTTCC CAGATAAT ACAA ATTATTTG TTTTTTGTTATAAAA BDU_713 757511 - 758545 + | hypothetical protein dnaG 758553 - 760328 + | DNA primase TERM 563 761892 - 761862 - g 91 -9.9 -4.01315 | AAAAACCGTAAAGAA TGTTTCAAGAGAA CCTGT TTCACTTGAAACA CCAATTGGAGAAGAA rpoD 760321 - 762213 + | RNA polymerase sigma-70 factor BDU_716 762210 - 762986 + | hypothetical protein TERM 564 763186 - 763168 - f 75 -7.4 -4.14392 | opp_overlap 763167 GGGTAAGGGTGAAAA GGTGAGGT AAG AGCTCACC GCTTATTTAGTGATA BDU_717 763381 - 764346 + | hypothetical protein TERM 565 764356 - 764375 + F 75 -4.4 -5.17353 | TTTTAGAGGGAGATT GATTTGAA TTTT TTTAAATC TTTTTTGATAGATAT mreB-1 764359 - 765408 + | rod shape-determining protein mreC 765411 - 766256 + | rod shape-determining protein BDU_720 766253 - 766735 + | hypothetical protein pbp-2 766741 - 768540 + | penicillin-binding protein mreB-2 768544 - 769863 + | rod shape-determining protein TERM 566 770625 - 770639 + G 79 -5 -5.47218 | opp_overlap 770625 CTGTTCATGATGAGA TAGGAC CTG GTCTTA TTTTTTTCCATCCAC TERM 567 771713 - 771728 + G 70 -7.6 -3.33265 | opp_overlap 771710, overlap 771717 CAAATTAATGGACTT GAGCTT AAAG AAGCTC TTGAATTTGTGAAGT thrZ 770021 - 771772 + | threonyl-tRNA synthetase BDU_724 771774 - 772397 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 568 772809 - 772797 - g 79 -3.5 -5.61277 | TATAAAAAAACAAAA TAAAA CTT TTTTA TTAAGAGATTTGCCA BDU_725 772378 - 773826 + | hypothetical protein BDU_726 774324 - 773803 - | adenylyl cyclase, CyaB-type, putative TERM 569 773894 - 773908 + g 81 -8.6 -4.10085 | opp_overlap 773893 ATTGTTTTGTAAATT TCTTGC TTG GCAAGA TTTAATTCATTTTTA TERM 570 774894 - 774906 + G 80 -7.7 -4.46212 | overlap 774901 TGAGGCTTTATTTAC TGCTG TTT CAGCA TTTTGTAATGCAGGG ntpJ 774415 - 775734 + | K transport protein BDU_728 775741 - 776523 + | hypothetical protein ylxH-3 776536 - 777507 + | MinD-related ATP-binding protein pfk 777544 - 778887 + | pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) nox 780245 - 778914 - | NADH oxidase, water-forming TERM 571 779158 - 779182 + g 77 -6.5 -4.7033 | overlap 779159 GGATAATAGTTTGTA TGGTTTTTATC TTT GATAAATACCG TTTTATATTGGATTC TERM 572 779159 - 779181 + g 70 -7.8 -3.41114 | overlap 779158 GATAATAGTTTGTAT GGTTTTTATC TTT GATAAATACC GTTTTATATTGGATT gltP 781640 - 780258 - | glutamate transporter TERM 573 781440 - 781450 + g 70 -5.4 -4.51763 | TCCTATGATATTAGT CCAT TGA ATGG TTTCTTGTATTATTG pgi 783258 - 781684 - | glucose-6-phosphate isomerase BDU_734 783696 - 783295 - | hypothetical protein pbp-3 786480 - 783703 - | penicillin-binding protein TERM 574 785885 - 785903 + g 77 -6.1 -4.63218 | opp_overlap 785868 785894, overlap 785868 AAAACAGCTTCTGCG GTGTTAA TATCT TTAACAC TTTTGTTGAAGAAAA BDU_736 786968 - 787756 + | hypothetical protein BDU_737 787740 - 788852 + | TPR domain protein BDU_738 789864 - 788860 - | hypothetical protein TERM 575 789633 - 789651 + g 75 -6 -4.75934 | AAATCATAGCACTAT CTGGTATA TAT TCTACCAG TTCTTTTATTTTTTC TERM 576 790105 - 790124 + G 70 -5.7 -4.30576 | GCTACTGTAGGGCTT GCTTCGT GGTATG GCGAAGC TTTTCATGGTAAGAC rlpA 789964 - 790794 + | rare lipoprotein A BDU_740 792838 - 790784 - | ATP-dependent helicase, DinG family BDU_741 793072 - 794091 + | histidine phosphokinase/phophatase, putative TERM 577 796358 - 796378 + G 91 -9.9 -4.08216 | opp_overlap 796360 TTTGAAATTTGGTAA TACTTTTCA GTC TGAAAAGTA TTTTAGAAGAAATGA TERM 578 796376 - 796360 - g 70 -8.1 -3.05294 | opp_overlap 796358 TGAAATTTGGTAATA CTTTTCA GTC TGAAAAG TATTTTAGAAGAAAT valS 794091 - 796724 + | valyl-tRNA synthetase TERM 579 796713 - 796729 + T 75 -4.5 -5.11389 | opp_overlap 796684 796713, overlap 796684 TCTAATTTAAAGAAA TCTAGTT ACT AATTAGA TTTTGTTTGTATTAT BDU_743 797430 - 796741 - | hypothetical protein TERM 580 797473 - 797443 - R 91 -11.4 -3.81602 | opp_overlap 797450, overlap 797446 CAAATTATAAGATAA TAATTTAATCTCTC TAG GAGAGAATAAATTA AAAAATCCATCACTC TERM 581 797470 - 797446 - R 82 -8.7 -4.01089 | opp_overlap 797450, overlap 797443 ATTATAAGATAATAA TTTAATCTCTC TAG GAGAGAATAAA TTAAAAAATCCATCA TERM 582 797591 - 797618 + r 100 -13 -5.70522 | opp_overlap 797578 797591 797597 ATTTTTTCTTTTAAA GAGAAACTAAAT CACA ATTTAGTTTCTC TTTTTTCTTATTCTT TERM 583 797618 - 797591 - R 100 -13 -3.53091 | opp_overlap 797591, overlap 797578 797597 ATTTTTTCTTTTAAA GAGAAACTAAAT CACA ATTTAGTTTCTC TTTTTTCTTATTCTT groES 797904 - 797626 - | chaperonin BDU_745 798042 - 799673 + | ABC transporter, ATP-binding protein TERM 584 801284 - 801258 - g 71 -7.4 -3.72485 | opp_overlap 801261 AAAGATAATTGTAAA TTCTTCTGAAGA GAA TCTTCAAAAGTA TAGAAGTAAATATCT BDU_746 799696 - 801381 + | hypothetical protein BDU_747 801510 - 803759 + | antigen, p83/100 nth 804099 - 804716 + | endonuclease III oppC-2 805575 - 804724 - | oligopeptide ABC transporter, permease protein oppB-2 806522 - 805575 - | oligopeptide ABC transporter, permease protein BDU_753 806998 - 806558 - | hypothetical protein TERM 585 807092 - 807039 - H 77 -9.3 -3.40566 | opp_overlap 807000 807039 807047 807088 807090, overlap 807000 807047 ATATTATATTTACAA GTACATAATTACAATATAATATGTT CTAT AGCATGTTATATTGTAATTGTATAC TTGTAAAGTATGAGT TERM 586 807039 - 807092 + H 100 -13.7 -3.3514 | opp_overlap 807000 807039 807047, overlap 807000 807047 807088 807090 ATATTATATTTACAA GTACATAATTACAATATAATATGTT CTAT AGCATGTTATATTGTAATTGTATAC TTGTAAAGTATGAGT TERM 587 807084 - 807047 - H 70 -7.3 -3.62644 | opp_overlap 807000 807039 807047, overlap 807000 807039 TTTACAAGTACATAA TTACAATATAATATGTT CTAT AGCATGTTATATTGTAA TTGTATACTTGTAAA TERM 588 807047 - 807084 + H 91 -11.7 -3.62644 | opp_overlap 807000 807047 807039, overlap 807000 807039 TTTACAAGTACATAA TTACAATATAATATGTT CTAT AGCATGTTATATTGTAA TTGTATACTTGTAAA TERM 589 808135 - 808121 - g 76 -7.2 -4.34402 | opp_overlap 808121 GTCTTTAGATCAAAA TTTGCA AGA TGCAAA TGATGTGGAAGTTCA BDU_754 807150 - 808721 + | hypothetical protein TERM 590 809069 - 809029 - T 77 -8.7 -3.64915 | opp_overlap 809065, overlap 809030 809033 809065 TCCGATAAATTAGAA CCAACTTTTTTAATAAATA GTA TTTTTATTAAAAAAGTTAA AGTTAACTTTGAATT TERM 591 809068 - 809030 - T 79 -10 -2.78467 | opp_overlap 809065, overlap 809029 809033 809065 CCGATAAATTAGAAC CAACTTTTTTAATAAATA GTA TTTTTATTAAAAAAGTTA AAGTTAACTTTGAAT TERM 592 809065 - 809033 - T 82 -9.5 -3.52809 | overlap 809030 809029 ATAAATTAGAACCAA CTTTTTTAATAAATA GTA TTTTTATTAAAAAAG TTAAAGTTAACTTTG BDU_755 810280 - 809231 - | hypothetical protein BDU_756 811742 - 810240 - | hypothetical protein BDU_757 812484 - 811750 - | putative ABC-2 type transport system permease protein BDU_758 813407 - 812481 - | putative ABC-2 type transport system ATP-binding protein TERM 593 812623 - 812636 + g 73 -5.3 -4.70626 | overlap 812615 812619 GGTTTGAGTTTTAAT GAAAC ATTG GTTTC TTTTTCAAATTCTTC TERM 594 813217 - 813229 + g 70 -4.9 -4.75776 | GGATTTTTTGTTATA TCTTT TCC AAAGA TTTTTACATTGCCTT BDU_759 814388 - 813429 - | ribonuclease Z TERM 595 813950 - 813976 + g 71 -4.6 -4.82111 | opp_overlap 813936 813930 813950, overlap 813930 ATCCAATACAATCTA TTGAATGTTTAA GTT TTATATATTCAA TTCTTTTTCTTTTAT BDU_760 815773 - 814694 - | hypothetical protein clpP-2 815925 - 816515 + | ATP-dependent Clp protease proteolytic component BDU_762 816457 - 817221 + | hypothetical protein BDU_764 818232 - 817366 - | hypothetical protein BDU_765 818596 - 818267 - | hypothetical protein BDU_766 818696 - 819583 + | hypothetical protein rrp-2 821153 - 819798 - | response regulatory protein BDU_768 822306 - 821146 - | sensory transduction histidine kinase, putative TERM 596 821418 - 821429 + g 93 -3 -6.47325 | opp_overlap 821418 TTTCATTTTCATGAA TAGA TATT TCTA TTTTTTTTATTTTTT TERM 597 821868 - 821880 + g 70 -6.3 -4.22749 | opp_overlap 821862, overlap 821865 821874 CAGCTAAAGCTTCAG CTCTT CTA AAGAG TTCTTCTTTATGTTT BDU_769 823349 - 822306 - | DNA polymerase III gamma and tau subunit BDU_770 823861 - 823367 - | colicin V production protein, putative murG 824939 - 823830 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) TERM 598 824790 - 824826 + gr 83 -8.3 -4.14193 | AATAAGTTTTTCTTC TATTGAATTTTTTTTTC CAA GCCAAAAAAATTCAATA TTTGTATCATATTCT TERM 599 824991 - 825003 + r 100 -6.3 -5.80951 | AATAATGTATTTTAA TGCAA ATA TTGCA TTTTTTCTTTTAAAT TERM 600 825103 - 825093 - R 79 -4 -5.75945 | opp_overlap 825093 ATTTTTTAAAAAAAA TTCA ATT TGAA TGTCTTTTTTTGTCG pdxK 825863 - 825069 - | pyridoxal kinase TERM 601 825646 - 825663 + g 72 -5.7 -4.58663 | opp_overlap 825646 825644 CCACTATAAAATATA TCAAAAT TTTC ATTTTGA TTTTTCCAGGATAGT gcp 826876 - 825860 - | sialoglycoprotease BDU_774 827768 - 826845 - | hypothetical protein rpoS 828617 - 827814 - | RNA polymerase sigma factor TERM 602 828691 - 828744 + r 91 -8.8 -4.71463 | gap 1, opp_overlap 828698 828703, overlap 828693 828694 ATGCAAAAATCATGC CAA-CTTAGAAAATAATTGATATTT TTATT AAATATTAATTATTTTCTAAGATTA TTTGTTATTTTAATT TERM 603 828693 - 828741 + r 100 -13 -4.42118 | opp_overlap 828698 828703, overlap 828691 828694 GCAAAAATCATGCCA ACTTAGAAAATAATTGATATTT TTATT AAATATTAATTATTTTCTAAGA TTATTTGTTATTTTA TERM 604 828694 - 828740 + r 100 -16.5 -3.22831 | opp_overlap 828698 828703, overlap 828693 828691 CAAAAATCATGCCAA CTTAGAAAATAATTGATATTT TTATT AAATATTAATTATTTTCTAAG ATTATTTGTTATTTT TERM 605 828736 - 828698 - R 72 -9.3 -2.54371 | opp_overlap 828694 828693 828691, overlap 828703 AATCATGCCAACTTA GAAAATAATTGATATTT TTATT AAATATTAATTATTTTC TAAGATTATTTGTTA flgJ 829061 - 828729 - | flagellum-specific muramidase flgI 830044 - 829064 - | flagellar P-ring protein TERM 606 829665 - 829681 + g 77 -9.5 -2.90219 | TTTGTTAAATCTTTT GCATCTA GCA TAGATGC TATGTAAACGTTATG TERM 607 829907 - 829919 + g 75 -3.5 -5.50313 | CGAATTAGCAGGTTG TATTT CAG AAATA TTTTTTAGTTTTGTG BDU_778 830878 - 830240 - | hypothetical protein flgG 831672 - 830875 - | flagellar basal-body rod protein TERM 608 831506 - 831519 + g 76 -8.1 -3.72432 | ACTGTGTTTTCAGTT GCAGG CGTT CCTGC TCTTCTTTGTGTTTG flhO 832535 - 831687 - | flagellar hook-basal body complex protein TERM 609 831903 - 831917 + g 71 -2.8 -5.42862 | overlap 831897 TTCTGTGCTGTACCA TAGGGA ACT TCCTTG TTTTTTTAAAAATCT BDU_781 832764 - 833336 + | hypothetical protein apt 833341 - 833901 + | adenine phosphoribosyltransferase TERM 610 833962 - 833944 - f 72 -6.2 -4.2123 | opp_overlap 833944 833946 833946 TATTCATGTAATAAA TATTAATT ATT AATTAATA TGATTTAAATTTAAA rplU 834030 - 834350 + | 50S ribosomal protein L21 BDU_784 834354 - 834686 + | hypothetical protein rpmA 834673 - 834918 + | 50S ribosomal protein L27 TERM 611 834977 - 834993 + G 72 -6.7 -4.07968 | GTTGATTTGCATCTA TTTAAAG ATT CTTTAAA TTTGATTGTCTCTTC obg 834968 - 835951 + | GTP-binding protein Obg nadD 836043 - 836618 + | nicotinate-nucleotide adenylyltransferase BDU_788 836619 - 837803 + | hypothetical protein BDU_789 837769 - 838128 + | hypothetical protein BDU_790 838227 - 838517 + | stage V sporulation protein G ctc 838682 - 839230 + | 50S ribosomal protein L25, general stress protein TERM 612 839254 - 839273 + G 70 -7.8 -3.39842 | overlap 839252 839252 AATTTATTAATAGTT GGCCTAGG TAAT CCTGGGTC TAATTTTTTGCATAC pth 839236 - 839802 + | peptidyl-tRNA hydrolase TERM 613 840579 - 840591 + G 74 -6.3 -4.62904 | GTTTTTTTTAATTTG CCAAA ATA TTTGG TTTTTAGAAGTGTTT BDU_794 839799 - 841118 + | cell cycle protein ftsH 841115 - 843025 + | cell division protein BDU_796 843048 - 844526 + | hypothetical protein BDU_797 844540 - 846180 + | trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain tdk 846216 - 847322 + | thymidine kinase BDU_799 847947 - 847330 - | hypothetical protein tmk 848588 - 847980 - | thymidylate kinase TERM 614 848690 - 848700 + GH 71 -4 -5.10665 | opp_overlap 848690 TTTATAAGGAATAAA GATA CCC TATC TTTTATTTGTTCGAT TERM 615 852586 - 852566 - gH 79 -8.4 -3.7511 | opp_overlap 852569, overlap 852569 CCTGCGAGAACAGAA CAAGAGAT TAAAT ATCTCTTG TCAAATGCAATAATT BDU_801 848663 - 853054 + | hypothetical protein TERM 616 854466 - 854482 + GF 83 -6.6 -4.82901 | GGATATTCTCTCTCA GCAAGA ATTAA TCTTGC TTTTTCTGAACAAAG BDU_802 853002 - 855524 + | outer membrane protein BDU_803 855557 - 856075 + | hypothetical protein BDU_804 856615 - 856106 - | hypothetical protein mutS_2 856675 - 859263 + | DNA mismatch repair protein TERM 617 859495 - 859514 + G 70 -5.1 -4.76644 | TACTTGGTAAATTTT TTGCAAA TATGAT TTTGCAA TTTTTAATGAATATT BDU_806 859272 - 859877 + | competence protein F, putative TERM 618 859945 - 859975 + F 91 -9.2 -4.61231 | opp_overlap 859948 859951, overlap 859948 859973 ATTGATTATTTTATT TAATAAGGTTCTTT TAA AAAGAGCCTTATTC TTTTTAGGAATGTGA TERM 619 859972 - 859948 - f 71 -8.7 -3.07113 | opp_overlap 859945 859948, overlap 859951 GATTATTTTATTTAA TAAGGTTCTTT TAA AAAGAGCCTTA TTCTTTTTAGGAATG TERM 620 859948 - 859972 + F 93 -10.9 -4.41633 | opp_overlap 859948 859951, overlap 859945 GATTATTTTATTTAA TAAGGTTCTTT TAA AAAGAGCCTTA TTCTTTTTAGGAATG BDU_807 859991 - 860422 + | hypothetical protein nusA 860397 - 861881 + | N-utilization substance protein A infB 861862 - 864501 + | translation initiation factor IF-2 rbfA 864491 - 864880 + | ribosome-binding factor A truB 864890 - 865735 + | tRNA pseudouridine 55 synthase rpsO 865957 - 866298 + | 30S ribosomal protein S15 TERM 621 867333 - 867321 - g 70 -7.7 -3.35597 | opp_overlap 867319 867317 867321, overlap 867319 TTGATCTTTTAAAGA GAACC CAT GGTTC TGCTCTTTTTACAAG pnpA 866312 - 868465 + | polyribonucleotide nucleotidyltransferase BDU_814 868475 - 869986 + | hypothetical protein BDU_815 869961 - 871250 + | hypothetical protein TERM 622 871810 - 871800 - gf 76 -4 -5.48303 | overlap 871809 ATAATTTTAAAAAAA GATA TGA TATC AGTAAAGCTGAGTGG BDU_816 871106 - 872314 + | hypothetical protein tgt 872332 - 873459 + | tRNA-guanine transglycosylase TERM 623 874258 - 874268 + G 73 -3.2 -5.4251 | TGTTTATTATCAGCT TCCT GTG GGGA TTTTTTATGTCTCGA TERM 624 874747 - 874783 + G 73 -5.5 -4.72277 | gap 1, overlap 874751 GCATGACATGAATCT TGAACTTAATAAAAGC ATAATA GTTTTTATTAAG-TCA TTTATTTCTATTATT mviN 873452 - 874975 + | virulence factor MviN protein BDU_819 874972 - 876405 + | hypothetical protein dfp 877661 - 876399 - | pantothenate metabolism flavoprotein TERM 625 879004 - 879022 + G 86 -4.6 -5.86465 | AAATATTTTTGCGAT TGGAGCTT TGG AAGTTTCA TTTTTTTCTATTATT panF_1 877817 - 879238 + | pantothenate permease TERM 626 880008 - 880018 + GF 74 -6.8 -4.32034 | opp_overlap 880006 880003 ACGCATCAAATAAGA GCAC AGT GTGC TTTTAATAATCATGC TERM 627 880115 - 880136 + GF 76 -3.9 -5.45652 | gap 1, opp_overlap 880115, overlap 880118 GATAAACTTTAACCA TTC-TTTCTT TTT AAGAAATGAA TTTTTTGTTGAACCT rluA_1 879243 - 880217 + | RNA pseudouridylate synthase family protein BDU_823 880186 - 881127 + | hypothetical protein murC_1 881075 - 882535 + | UDP-N-acetylmuramate-alanine ligase (MurC) BDU_825 882547 - 882864 + | hypothetical protein TERM 628 884064 - 884082 + G 86 -4.6 -5.86465 | AAATATTTTTGCGAT TGGAGCTT TGG AAGTTTCA TTTTTTTCTATTATT panF_2 882877 - 884298 + | pantothenate permease TERM 629 885068 - 885078 + GF 74 -6.8 -4.32034 | opp_overlap 885066 885063 ACGCATCAAATAAGA GCAC AGT GTGC TTTTAATAATCATGC TERM 630 885175 - 885196 + GF 76 -3.9 -5.45652 | gap 1, opp_overlap 885175, overlap 885178 GATAAACTTTAACCA TTC-TTTCTT TTT AAGAAATGAA TTTTTTGTTGAACCT rluA_2 884303 - 885277 + | RNA pseudouridylate synthase family protein BDU_828 885246 - 886187 + | hypothetical protein murC_2 886135 - 887595 + | UDP-N-acetylmuramate-alanine ligase (MurC) BDU_830 887607 - 888476 + | hypothetical protein BDU_831 888473 - 889012 + | cytidylate kinase BDU_832 889002 - 889232 + | hypothetical protein miaA 889219 - 890121 + | 2-methylthio-N6-isopentyladenosine tRNA modification enzyme TERM 631 890271 - 890227 - T 100 -6.3 -5.71295 | gap 2, opp_overlap 890232 890234 890238, overlap 890231 890234 890238 ACATAAAAAGAAAAA TAAATAATAAAGATGTTAGTT TTGCT AACTAACATCTTTAT-A-TTA TTAGTTTATTCAATG TERM 632 890268 - 890231 - T 100 -9.6 -5.21459 | gap 1, opp_overlap 890232 890234 890238, overlap 890227 890234 890238 AAAAAGAAAAATAAA TAATAAAGATGTTAGTT TTGCT AACTAACATCTTTAT-A TTATTAGTTTATTCA TERM 633 890232 - 890268 + T 95 -11.2 -3.96681 | opp_overlap 890231 890227 890234 890238, overlap 890234 890238 AAAAGAAAAATAAAT AATAAAGATGTTAGTT TTGCT AACTAACATCTTTATA TTATTAGTTTATTCA TERM 634 890234 - 890266 + T 100 -13.8 -3.55605 | opp_overlap 890234 890231 890227 890238, overlap 890232 890238 AAGAAAAATAAATAA TAAAGATGTTAGTT TTGCT AACTAACATCTTTA TATTATTAGTTTATT TERM 635 890266 - 890234 - T 100 -13.8 -4.5815 | opp_overlap 890232 890234 890238, overlap 890231 890227 890238 AAGAAAAATAAATAA TAAAGATGTTAGTT TTGCT AACTAACATCTTTA TATTATTAGTTTATT TERM 636 890262 - 890238 - T 100 -10.2 -4.73617 | opp_overlap 890234 890232 890238, overlap 890234 890231 890227 AAAATAAATAATAAA GATGTTAGTT TTGCT AACTAACATC TTTATATTATTAGTT TERM 637 890238 - 890262 + T 91 -10.2 -4.36774 | opp_overlap 890238 890234 890231 890227, overlap 890234 890232 AAAATAAATAATAAA GATGTTAGTT TTGCT AACTAACATC TTTATATTATTAGTT BDU_834 890633 - 890277 - | hypothetical protein BDU_835 890711 - 891259 + | hypothetical protein BDU_836 892040 - 891231 - | hypothetical protein BDU_837 892545 - 892033 - | hypothetical protein TERM 638 892285 - 892303 + g 70 -6.2 -4.10407 | overlap 892288 GTCTTTGGGTGGTTG TAATTTTT GTA AAAAATTA TTTGCTTCTTCATAT TERM 639 892584 - 892615 + r 100 -9 -6.04324 | opp_overlap 892584 892594 TCCTTTTAGTAGAAA TACAAAGAAAGAAA TAAA TTTATTTCTTTGTA TTTTTTATTTTTTAA TERM 640 892615 - 892584 - R 83 -9 -3.96148 | opp_overlap 892584, overlap 892594 TCCTTTTAGTAGAAA TACAAAGAAAGAAA TAAA TTTATTTCTTTGTA TTTTTTATTTTTTAA TERM 641 892609 - 892594 - R 71 -4.8 -4.74787 | opp_overlap 892584, overlap 892584 AGAAATACAAAGAAA GAAATA AATT TATTTC TTTGTATTTTTTATT nagE 894063 - 892627 - | Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC hrpA 896640 - 894154 - | ATP-dependent helicase TERM 642 894596 - 894615 + g 72 -6.6 -4.15006 | overlap 894583 TTTTTTAAACCTTTT GAAATTAA TTGT TTAATTTC TTTTAAGCTAAATGT TERM 643 894639 - 894663 + g 100 -10.3 -5.52986 | opp_overlap 894638 TAAATGTTAATTGAT TTTTATATTCA TTT TGAATATAAAA TTTTTTTCCTCCAAT TERM 644 896135 - 896147 + g 72 -3.5 -5.28414 | opp_overlap 896135 GGGGCATTGTTAAAA TATTT TGA AAATA TTTTTGTATTTATTG topA 899181 - 896644 - | DNA topoisomerase I TERM 645 897039 - 897049 + g 76 -4 -5.45652 | CTAGCGTGATATTTT CATA TTC TATG TTTTTTGTTGAAACT TERM 646 900018 - 900028 + G 74 -2.6 -5.67967 | ATGTTAAAAAATATG TAAA CGT TTTA TTTTTTTGTGATAAT sbcD 899258 - 900490 + | exonuclease SbcD TERM 647 901364 - 901375 + G 70 -3 -5.22039 | AAGACTTGCATTTTA TCAT TCTA ATGA TTTTTTGGATTTAAA TERM 648 902397 - 902373 - g 78 -8.1 -4.05004 | opp_overlap 902374 TTATTAGAAGAAGAA TTTGAAAAATT TTT AATTTCTCAAA GAAATATAGAAAATG sbcC 900477 - 903332 + | exonuclease SbcC xylR-2 903368 - 904318 + | xylose operon regulatory protein cutC 904319 - 904948 + | copper homeostasis protein cutC BDU_845 905841 - 905017 - | hypothetical protein TERM 649 905386 - 905328 - G 73 -9.2 -2.70932 | opp_overlap 905329 905331 905333 905334, overlap 905342 905352 TGTTGTTTGGAATGA GTTTAGTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAATGTAT TTTGTTATGAGTATG TERM 650 905329 - 905385 + g 100 -14.9 -4.79955 | opp_overlap 905328 905342 905352, overlap 905331 905333 905334 GTTGTTTGGAATGAG TTTAGTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAATGTA TTTTGTTATGAGTAT TERM 651 905331 - 905383 + g 100 -17.5 -4.01115 | opp_overlap 905328 905342 905352, overlap 905329 905333 905334 TGTTTGGAATGAGTT TAGTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAATG TATTTTGTTATGAGT TERM 652 905333 - 905381 + g 100 -17.9 -3.58542 | opp_overlap 905328 905342 905352, overlap 905331 905329 905334 TTTGGAATGAGTTTA GTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAA TGTATTTTGTTATGA TERM 653 905334 - 905380 + g 100 -21.4 -2.7404 | opp_overlap 905328 905342 905352, overlap 905333 905331 905329 TTGGAATGAGTTTAG TGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCA ATGTATTTTGTTATG TERM 654 905372 - 905342 - G 87 -11.4 -2.64735 | opp_overlap 905334 905333 905331 905329, overlap 905328 905352 AGTTTAGTGATATCA TTGATCAAAATGAA TAT TTCATGTTGATCAA TGATATCAATGTATT ileS 908963 - 905829 - | isoleucyl-tRNA synthetase TERM 655 908469 - 908455 - G 75 -7.2 -4.13995 | opp_overlap 908454 908455, overlap 908468 CTTTCATAAATTAAA CCTTTA TTG TAAAGG GTTTTAAATACCCAC clpC 911182 - 908948 - | ATP-dependent Clp protease, subunit C cpsG 912908 - 911199 - | phosphomannomutase TERM 656 912995 - 913005 + H 73 -4 -5.29846 | TTGATTATTATATTT GATT TAT AATC TTTTTATTTGGGGTT TERM 657 913394 - 913429 + G 73 -7.8 -3.78156 | gap 1, opp_overlap 913394 913400, overlap 913397 913400 TAAAGAGAATAAGGA CAGTAACATCTCTTTCT AGA AGAC-GAGATGTTATTG TTGTTGCTACTGTTT TERM 658 913498 - 913516 + G 73 -7.6 -3.75153 | AGTGCTGCTAATGTT TTTTTTGT AGG ACAAAAAA TTTCCATTAAGGAGA uvrB 913024 - 914988 + | excinuclease ABC, subunit B uvrA 915016 - 917856 + | excinuclease ABC, subunit A TERM 659 920408 - 920392 - gT 82 -4.5 -5.62219 | overlap 920394 AAGACACTAAAAAAA CTTTCTT TTC AAAAAAG ACGCTTATTAATTCA BDU_851 917811 - 921269 + | hypothetical protein BDU_852 922010 - 921417 - | hypothetical protein BDU_853 923591 - 922017 - | hypothetical protein arcA 923777 - 925006 + | arginine deiminase arcB 924970 - 926019 + | ornithine carbamoyltransferase, catabolic BDU_856 926072 - 927487 + | hypothetical protein arcC 927506 - 928444 + | carbamate kinase TERM 660 929490 - 929508 + G 77 -5.4 -5.00846 | opp_overlap 929490 TCTTATATTTTAAAT GAAAATTT ATG GAATTTTC TTTTTATAGTGTTTA TERM 661 929994 - 930004 + G 71 -2.6 -5.40072 | TATGTAATTATGAGT TTAT TAT ATAA TTTTTTTAGGAAAGA BDU_858 928770 - 930092 + | xanthine/uracil permease family protein SEQUENCE gi|203288469|ref|NC_011245.1| Borrelia duttonii Ly plasmid pl28, complete sequence (length 28343) BDU_10001 171 - 539 + | hypothetical protein TERM 1 561 - 548 - T 78 -9.5 -3.15252 | opp_overlap 548 AAATTAATTATTTAA GCCCC TGAT GGGGC TTTTTATTATCACGT TERM 2 548 - 561 + T 100 -9.5 -5.19328 | opp_overlap 548 AAATTAATTATTTAA GCCCC TGAT GGGGC TTTTTATTATCACGT BDU_10002 1602 - 571 - | hypothetical protein TERM 3 1321 - 1306 - G 74 -6.2 -4.52703 | opp_overlap 1309 TAAAGGACTATAAAA TGTTGT TGTA ACAACA TCTACTAAATTACCA TERM 4 1743 - 1794 + r 89 -10.4 -3.794 | opp_overlap 1722 1746, overlap 1751 TTATAATTTACTACA AAACATAATCCTTACTTAAGGATA TTGT TACCCTTAAGTAAGGATTATGACC TTTCATAGATTAACC TERM 5 1791 - 1746 - R 100 -23.1 -4.48741 | opp_overlap 1743 1751, overlap 1722 TAATTTACTACAAAA CATAATCCTTACTTAAGGATA TTGT TACCCTTAAGTAAGGATTATG ACCTTTCATAGATTA TERM 6 1751 - 1786 + r 100 -15 -3.40382 | opp_overlap 1722 1746, overlap 1743 TACTACAAAACATAA TCCTTACTTAAGGATA TTGT TACCCTTAAGTAAGGA TTATGACCTTTCATA pf49 2492 - 1911 - | PF49 plasmid partition protein TERM 7 2131 - 2119 - G 71 -4.1 -5.14563 | TTTTCCATCAAAAAA GACAA AGA CTGTC TAAATCCATTTTCAA TERM 8 2177 - 2194 + g 81 -9.9 -3.06183 | opp_overlap 2169 2168 TCAAAATTCCATCTT GGATAGC ACTA GCTATCC TTAAATAGGAATAAG TERM 9 2548 - 2529 - R 83 -10.8 -3.0644 | opp_overlap 2529 ATTTAATCTTTAACA GTTGTCCA GCGT TGGACAAC TTACATCAGGAACTA TERM 10 2529 - 2548 + r 83 -10.8 -3.05596 | opp_overlap 2529 ATTTAATCTTTAACA GTTGTCCA GCGT TGGACAAC TTACATCAGGAACTA pf32 3338 - 2523 - | PF32 plasmid partition protein TERM 11 2729 - 2741 + g 75 -3.5 -5.46276 | overlap 2724 TAGCTTTCTCTTGAA TTATT TTC AATAA TTTTTTATGTGTATT ppap1 3874 - 3314 - | plasmid partitioning associated protein-1 TERM 12 3760 - 3772 + g 72 -4.9 -4.82162 | AATCTTTCATAATTT TTGTA TGA TACAA TTTTCTATTATTCTC ppap2 4996 - 3884 - | plasmid partitioning associated protein 2 TERM 13 5072 - 5114 + H 74 -8.2 -3.51137 | opp_overlap 5088 5099 5100, overlap 5074 5075 5088 TAGAAAGTAAACCTT TTCTTTTAATAAAAAATTTT CAA AAAATTTTTTATTAAAAATA TTATATCAAATACTT TERM 14 5074 - 5112 + H 86 -10.8 -3.32698 | opp_overlap 5088 5099 5100, overlap 5072 5075 5088 GAAAGTAAACCTTTT CTTTTAATAAAAAATTTT CAA AAAATTTTTTATTAAAAA TATTATATCAAATAC TERM 15 5075 - 5111 + H 100 -14.3 -2.59298 | opp_overlap 5088 5099 5100, overlap 5074 5072 5088 AAAGTAAACCTTTTC TTTTAATAAAAAATTTT CAA AAAATTTTTTATTAAAA ATATTATATCAAATA TERM 16 5088 - 5098 + H 71 -2.6 -5.45652 | opp_overlap 5088, overlap 5075 5074 5072 TCTTTTAATAAAAAA TTTT CAA AAAA TTTTTTATTAAAAAT BDU_10007 5200 - 6555 + | BppA TERM 17 6913 - 6940 + G 86 -9.4 -3.72576 | opp_overlap 6913 6916, overlap 6916 AGGTGAGTGGAGAGA TAATGCACAATT TTTT AATTGTGTATTA TTTGGTAAACGAGCA TERM 18 6916 - 6937 + G 70 -6.7 -4.00042 | opp_overlap 6916 6913, overlap 6913 TGAGTGGAGAGATAA TGCACAATT TTTT AATTGTGTA TTATTTGGTAAACGA ssb 6755 - 7198 + | single-stranded DNA-binding protein bppB 7244 - 7660 + | BppB TERM 19 7869 - 7879 + T 70 -4 -5.16151 | CATACATTTTTTATG TCAA ATC TTGA TTTTTGTTAAGTTTG TERM 20 7965 - 7995 + T 100 -7.8 -5.22006 | opp_overlap 7964 TAGAATAAAAAATTC TAACAAAGAGAATT GTA ACTTCTTTTTGTTA TTTTTATTATAGTAA bppC 8772 - 8020 - | BppC TERM 21 9076 - 9094 + r 86 -6.8 -5.02357 | overlap 9088 TAACTTATCTTTCCC TGTTAACT TCA GGTTAACA TTTTGTTTACTTATA BDU_10011 9637 - 9206 - | MlpL-like protein, lipoprotein BDU_10012 9774 - 10313 + | family 115-like protein bsr 10318 - 11670 + | bsr protein bdr 11682 - 12185 + | bdr protein BDU_10015 12330 - 13592 + | hypothetical protein BDU_10016 13599 - 14309 + | hypothetical protein BDU_10017 14321 - 14875 + | hypothetical protein BDU_10018 14875 - 15651 + | hypothetical protein BDU_10019 15674 - 16234 + | hypothetical protein BDU_10020 16250 - 17218 + | hypothetical protein BDU_10021 17228 - 17701 + | hypothetical protein BDU_10022 17680 - 18096 + | hypothetical protein BDU_10023 18080 - 18472 + | hypothetical protein TERM 22 18883 - 18870 - g 82 -5.3 -5.55664 | TGACTACCAAAAAAA TGTGA AATT TCACA TTCGCCATACAACAA BDU_10024 18469 - 19029 + | hypothetical protein BDU_10025 19019 - 20149 + | hypothetical protein TERM 23 20286 - 20308 + G 71 -7.9 -3.61589 | overlap 20281 GGGACTTCCGGTAGT TAGTTTTAG AGACC CTAAAACTA TTACTTTCATATTCA BDU_10026 20149 - 20574 + | hypothetical protein BDU_10027 20594 - 21031 + | hypothetical protein BDU_10028 21044 - 21274 + | hypothetical protein BDU_10029 21271 - 22749 + | hypothetical protein BDU_10030 22761 - 23396 + | hypothetical protein BDU_10031 23401 - 24600 + | hypothetical protein TERM 24 24646 - 24633 - g 73 -8.1 -3.50332 | opp_overlap 24632 24633, overlap 24629 TATTTACAGAATGAA CAGCC AAAT GGCTG GTTCTGCGTTAACAC BDU_10032 24601 - 25143 + | hypothetical protein TERM 25 25155 - 25130 - f 70 -6.3 -4.10507 | opp_overlap 25144, overlap 25144 AAAACAAAATAAACA TGTTGCTAAAA TAGT TTTTAGCAAAA ATAGTATTATACTTC BDU_10033 25205 - 25537 + | hypothetical protein TERM 26 26202 - 26216 + G 79 -3.6 -5.56568 | overlap 26204 TGATATGGGAATTAG TTTTGA ATA TCAAGA TTTTTTTGCTCCTGT BDU_10034 25534 - 26415 + | hypothetical protein BDU_10035 26428 - 27048 + | hypothetical protein TERM 27 27264 - 27246 - g 77 -3 -5.63504 | overlap 27248 AATTGCACAAAAAAA CATTCGTC AAA GGCGAAGG CGTTAATGATTTTAA BDU_10036 26945 - 27943 + | hypothetical protein SEQUENCE gi|203288506|ref|NC_011247.1| Borrelia duttonii Ly plasmid pl165, complete sequence (length 163884) BDU_1001 2512 - 1448 - | Viral A-type inclusion protein repeat containing protein TERM 1 2161 - 2171 + g 74 -4 -5.19998 | overlap 2167 CAACTTGTTGTTGTC TTTG TTG CAAA TTTTGTTTTGCTTGT BDU_1002 3648 - 2641 - | Viral A-type inclusion protein repeat containing protein TERM 2 2795 - 2806 + g 70 -3 -5.26119 | overlap 2796 TCATTCAAATAATCT TCAA AATC TTGA TTTTGTTTTTCAAGA BDU_1003 4074 - 3775 - | hypothetical protein TERM 3 4228 - 4208 - R 77 -7.6 -4.2416 | opp_overlap 4208, overlap 4205 TAATTCAATAAATAA CCAAGGAA GAATT TCCCTTGG TTTATGCATTTATAT BDU_1004 5428 - 4283 - | hypothetical protein TERM 4 5623 - 5603 - R 74 -6.9 -4.2416 | opp_overlap 5603, overlap 5600 TAATTCAATAAATAA CCAAGGAAA AAT TTTCATTGG TTTATGCATTTATAT TERM 5 5603 - 5623 + r 73 -6.9 -4.04922 | opp_overlap 5603 5600 TAATTCAATAAATAA CCAAGGAAA AAT TTTCATTGG TTTATGCATTTATAT BDU_1005 6751 - 5681 - | hypothetical protein TERM 6 6949 - 7006 + r 71 -6.1 -4.38154 | opp_overlap 6958 6960 6964 6992, overlap 6958 ATTTCCCTTGGTTTA TGCACTTAATATTAATTGTATTTAATT AAAT AATTAAATACAATTAATATTTATTAAA TTTTATCCAAGATAT TERM 7 6958 - 6997 + r 100 -15.6 -4.3351 | opp_overlap 6958 6960 6964 6992, overlap 6949 GGTTTATGCACTTAA TATTAATTGTATTTAATT AAAT AATTAAATACAATTAATA TTTATTAAATTTTAT TERM 8 6997 - 6958 - R 100 -15.6 -3.07816 | opp_overlap 6958 6949, overlap 6960 6964 6992 GGTTTATGCACTTAA TATTAATTGTATTTAATT AAAT AATTAAATACAATTAATA TTTATTAAATTTTAT TERM 9 6995 - 6960 - R 100 -13.8 -3.09878 | opp_overlap 6958 6949, overlap 6958 6964 6992 TTTATGCACTTAATA TTAATTGTATTTAATT AAAT AATTAAATACAATTAA TATTTATTAAATTTT TERM 10 6991 - 6964 - R 82 -10.2 -3.38072 | opp_overlap 6958 6949, overlap 6960 6958 TGCACTTAATATTAA TTGTATTTAATT AAAT AATTAAATACAA TTAATATTTATTAAA BDU_1006 7979 - 7002 - | hypothetical protein BDU_1007 9418 - 8222 - | putative lipoprotein TERM 11 9512 - 9481 - R 77 -9 -3.38178 | opp_overlap 9479 9481 CAATTAACTTTACAA TGTTAGATATTACT TAAT AATAACATCTAACA TATTTATATATCAAG TERM 12 9519 - 9542 + r 75 -9.8 -2.57957 | opp_overlap 9515 9523, overlap 9518 9517 9521 CATCTAACATATTTA TATATCAAGT TTAA ACTTGATATA ATATTATAATGATTA BDU_1008 10505 - 9573 - | hypothetical protein TERM 13 10309 - 10321 + g 70 -6.3 -4.17958 | TTTTCCTTTTGCATC CTTTG TTC CAAAG TTTCTTCAACATATT TERM 14 10530 - 10577 + r 100 -22 -2.65766 | opp_overlap 10530, overlap 10533 ATTTATTTAAAAAAA GAATATTTTAAGTATTATTCTT AATT AAGAATAATACTTAAAATATTC TAATGTCAAGTTTAA TERM 15 10577 - 10530 - R 100 -22 -5.47821 | opp_overlap 10530 10533 ATTTATTTAAAAAAA GAATATTTTAAGTATTATTCTT AATT AAGAATAATACTTAAAATATTC TAATGTCAAGTTTAA TERM 16 10533 - 10574 + r 100 -17.9 -3.47345 | opp_overlap 10530, overlap 10530 TATTTAAAAAAAGAA TATTTTAAGTATTATTCTT AATT AAGAATAATACTTAAAATA TTCTAATGTCAAGTT TERM 17 10640 - 10660 + r 100 -12.7 -3.64682 | opp_overlap 10640, overlap 10632 TGCTTTAATGAATAA CCAAGGAAA ATT TTTCCTTGG TTTAGCAATTTAATA TERM 18 10660 - 10640 - R 100 -12.7 -3.81146 | opp_overlap 10640 10632 TGCTTTAATGAATAA CCAAGGAAA ATT TTTCCTTGG TTTAGCAATTTAATA BDU_1009 11754 - 10708 - | hypothetical protein TERM 19 11942 - 11966 + r 85 -10.1 -3.80189 | opp_overlap 11944, overlap 11944 GGCACTTTGATAAAT AACCAAGGAAA AAT TTTCCTTGGTG TTTAAATTAATGTAT TERM 20 11944 - 11964 + r 100 -12.7 -3.47928 | opp_overlap 11944, overlap 11942 CACTTTGATAAATAA CCAAGGAAA AAT TTTCCTTGG TGTTTAAATTAATGT TERM 21 11964 - 11944 - R 100 -12.7 -4.07133 | opp_overlap 11944 11942 CACTTTGATAAATAA CCAAGGAAA AAT TTTCCTTGG TGTTTAAATTAATGT BDU_1010 12955 - 12020 - | hypothetical protein TERM 22 13082 - 13118 + r 70 -6.2 -4.09685 | gap 1 TCACATATCAAGTTT TGCCTATATACAATATA GTAA TA-ATTATATATAGGCA TTTTGACAAATAACC TERM 23 13130 - 13153 + r 76 -8.2 -3.76393 | opp_overlap 13132, overlap 13132 GGCATTTTGACAAAT AACCAAGGAA AATT TTCCTTGGTG TTTAAATTAAGGTAT TERM 24 13151 - 13132 - R 93 -10.8 -4.07133 | opp_overlap 13130 13132 CATTTTGACAAATAA CCAAGGAA AATT TTCCTTGG TGTTTAAATTAAGGT TERM 25 13132 - 13151 + r 86 -10.8 -3.46336 | opp_overlap 13132, overlap 13130 CATTTTGACAAATAA CCAAGGAA AATT TTCCTTGG TGTTTAAATTAAGGT BDU_1011 14145 - 13207 - | hypothetical protein TERM 26 14333 - 14357 + r 85 -10.1 -3.80189 | opp_overlap 14335, overlap 14335 GGCACTTTGATAAAT AACCAAGGAAA AAT TTTCCTTGGTG TTTAAATTAATGTAT TERM 27 14335 - 14355 + r 100 -12.7 -3.47928 | opp_overlap 14335, overlap 14333 CACTTTGATAAATAA CCAAGGAAA AAT TTTCCTTGG TGTTTAAATTAATGT TERM 28 14355 - 14335 - R 100 -12.7 -4.07133 | opp_overlap 14335 14333 CACTTTGATAAATAA CCAAGGAAA AAT TTTCCTTGG TGTTTAAATTAATGT BDU_1012 15343 - 14411 - | hypothetical protein TERM 29 15530 - 15554 + r 85 -10.1 -3.76393 | opp_overlap 15532, overlap 15532 GGCACTTTAATAAAT AACCAAGGAAA AAT TTTCCTTGGTG TTTAAATTAAGGTAT TERM 30 15552 - 15532 - R 100 -12.7 -4.21438 | opp_overlap 15530 15532 CACTTTAATAAATAA CCAAGGAAA AAT TTTCCTTGG TGTTTAAATTAAGGT TERM 31 15532 - 15552 + r 100 -12.7 -3.46336 | opp_overlap 15532, overlap 15530 CACTTTAATAAATAA CCAAGGAAA AAT TTTCCTTGG TGTTTAAATTAAGGT BDU_1013 16585 - 15608 - | hypothetical protein TERM 32 16754 - 16774 + r 100 -12.7 -4.03204 | opp_overlap 16754, overlap 16747 CATTTTGATAAATAA CCAAGGAAA ATT TTTCCTTGG TTTATGAATTTCATA TERM 33 16774 - 16754 - R 100 -12.7 -4.07133 | opp_overlap 16754 16747 CATTTTGATAAATAA CCAAGGAAA ATT TTTCCTTGG TTTATGAATTTCATA TERM 34 16777 - 16789 + r 77 -4.9 -5.25976 | overlap 16747 AATTTTTCCTTGGTT TATGA ATT TCATA TTTATTTTTTTAATT BDU_1014 17812 - 16829 - | hypothetical protein TERM 35 17883 - 17906 + r 75 -8.3 -3.3487 | overlap 17881 17880 AATTTTTCTTAGTGA TGTTGAATG CAAAAA CATTCAACA TATATTTACTTAAAT BDU_1015 18678 - 17941 - | hypothetical protein TERM 36 18040 - 18073 + g 71 -4.6 -4.83759 | overlap 18043 TACTAGCGCAGAGCC TAATGTTTCACCTG CTTTAT CAGGTGTGACATCA TTTTTCAATTTCATT BDU_1016 19655 - 18807 - | hypothetical protein TERM 37 19730 - 19674 - R 95 -11.3 -4.15841 | opp_overlap 19682 19687, overlap 19687 TTATTAAATTACAAA CTGGCTAATTAAATATAACCAAGAAAA ATT TTTCCTTGGTTATATTTAATTTAAAAG TGTCCTAAATATATT TERM 38 19682 - 19722 + r 100 -15.9 -3.59738 | opp_overlap 19674 19687, overlap 19687 TTACAAACTGGCTAA TTAAATATAACCAAGAAAA ATT TTTCCTTGGTTATATTTAA TTTAAAAGTGTCCTA TERM 39 19687 - 19717 + r 95 -11.4 -4.06502 | opp_overlap 19674 19687, overlap 19682 AACTGGCTAATTAAA TATAACCAAGAAAA ATT TTTCCTTGGTTATA TTTAATTTAAAAGTG TERM 40 19717 - 19687 - R 100 -13.6 -3.90856 | opp_overlap 19687 19682, overlap 19674 AACTGGCTAATTAAA TATAACCAAGAAAA ATT TTTCCTTGGTTATA TTTAATTTAAAAGTG BDU_1017 20632 - 19766 - | hypothetical protein TERM 41 19977 - 19987 + g 74 -4 -5.24799 | overlap 19973 AGTGGTTGCAATATC TTAG ATA CTAA TTTTTCTCTTTCTGC BDU_1018 21249 - 20743 - | hypothetical protein BDU_1019 21639 - 21310 - | hypothetical protein TERM 42 21681 - 21710 + r 93 -10.9 -3.94002 | opp_overlap 21676 21668 21686, overlap 21683 AACTAACTAATTATT GATAACCAAGGAA AATT TTCCTTGGTTATA TTTAATTCAATAGTA TERM 43 21683 - 21708 + r 100 -13.5 -3.55604 | opp_overlap 21676 21668 21686, overlap 21681 CTAACTAATTATTGA TAACCAAGGAA AATT TTCCTTGGTTA TATTTAATTCAATAG TERM 44 21705 - 21686 - R 86 -10.8 -3.39862 | opp_overlap 21683 21681, overlap 21676 21668 ACTAATTATTGATAA CCAAGGAA AATT TTCCTTGG TTATATTTAATTCAA BDU_1020 22646 - 21771 - | hypothetical protein BDU_1021 23594 - 22758 - | hypothetical protein TERM 45 23598 - 23583 - G 74 -4.8 -5.14626 | opp_overlap 23583 ATTATTAAAATAAAA CAATTT ATTC AAATTG TTTGCTATATGTTAA TERM 46 23603 - 23637 + r 85 -8.3 -4.31 | gap 1, opp_overlap 23633, overlap 23633 TATTCAAATTGTTTG CTATATGTTAATTAAT AATC ATTA-TTAACATATAG TTTATATTAATTTGA BDU_1022 24482 - 23706 - | antigen P35-like protein TERM 47 24156 - 24144 - G 74 -4.9 -5.13648 | GAAAGATAAATAAAA TATTC TTC GAATA AATAAATTTCTAGCA TERM 48 24639 - 24612 - R 78 -2.9 -5.89947 | gap 1, opp_overlap 24619, overlap 24619 CAAATCTAAAAAAAA CAAAAGAG-AGA ATATA TCTTCTCTTTTA CAGTCATAATTTTAA BDU_1023 25477 - 24677 - | antigen P35-like protein TERM 49 25559 - 25541 - R 72 -7.6 -3.73756 | opp_overlap 25519, overlap 25519 TATTTTATCAAAAGA TATCAATT CTT AATTGATA AAATATATTATATGA TERM 50 25591 - 25567 - R 84 -10.3 -3.49789 | opp_overlap 25563, overlap 25565 25563 AATTGATAAAATATA TTATATGATAT TAT ATATCATATAA ATCAAGATAGCAAAA BDU_1024 26541 - 25750 - | hypothetical protein TERM 51 26734 - 26717 - R 95 -7 -5.30448 | opp_overlap 26717 26717 AAATAAATATAAAAA CCCCTT AATACA AAGGGG GTATTTACATAATGT TERM 52 26801 - 26829 + r 79 -7.8 -3.8374 | opp_overlap 26808, overlap 26804 26815 AATTAAAGTATTTGG TAATTAATTATT AGTGC AATAATTAATTA TTTCAAGTTTTTTCC TERM 53 27412 - 27378 - R 80 -9.5 -3.34043 | opp_overlap 27378 27373 CCTATTATTTCATAA TGGCAGATAGACT TTTAAATTT AATCTATCTGCCA TTCTATTTTAAATTA TERM 54 27378 - 27412 + r 74 -7.3 -3.99228 | opp_overlap 27378, overlap 27373 CCTATTATTTCATAA TGGCAGATAGACT TTTAAATTT AATCTATCTGCCA TTCTATTTTAAATTA TERM 55 27453 - 27463 + r 70 -5.4 -4.60648 | opp_overlap 27441 27453, overlap 27441 CCACTACTTTACATA CCTA AAG TAGG TTTATTTACTGTTTT BDU_1026 28583 - 27465 - | BBK32 immunogenic protein P35 TERM 56 29196 - 29208 + H 72 -3.4 -5.27779 | opp_overlap 29183 29196, overlap 29180 29179 TATTTGAATCAACAA GCTT CAAAT AAGC TTTTTTACTATTAGA TERM 57 30118 - 30098 - g 75 -5.5 -4.84529 | TTACAAATTCAAAAA TTTGCAAAA GAA TTTAGCAAA CAGGAAGATGGTATT TERM 58 31266 - 31246 - g 72 -3.3 -5.32608 | opp_overlap 31246, overlap 31249 AAAAAATGCAAAAAA GGATCAACA TAT TATTGATTC TCTTATTAAAGAACA BDU_1028 29825 - 31678 + | hypothetical protein TERM 59 33257 - 33237 - g 91 -7.7 -5.32608 | opp_overlap 33235 33237 33256 AAAAAATGCAAAAAA GAATCAACA TAT TATTGATTC TCTTGTTAAAGAACA BDU_1029 31843 - 33669 + | putative lipoprotein TERM 60 35249 - 35229 - g 91 -7.7 -5.32608 | opp_overlap 35227 35229 35248 AAAAAATGCAAAAAA GAATCAACA TAT TATTGATTC TCTTGTTAAAGAACA BDU_1030 34012 - 35661 + | hypothetical protein BDU_1031 36455 - 37252 + | hypothetical protein TERM 61 37365 - 37334 - f 100 -13.4 -4.76123 | opp_overlap 37341, overlap 37341 AAATTATGAACAAAA TATAAAAGTACAAA TTCT TTTGTACTTTTATA TCAAATAGTATCTAT TERM 62 37358 - 37341 - f 86 -7.1 -4.98103 | opp_overlap 37341, overlap 37334 GAACAAAATATAAAA GTACAAA TTCT TTTGTAC TTTTATATCAAATAG TERM 63 37341 - 37358 + F 76 -7.1 -4.54047 | opp_overlap 37341 37334 GAACAAAATATAAAA GTACAAA TTCT TTTGTAC TTTTATATCAAATAG TERM 64 37771 - 37751 - g 72 -3.3 -5.32608 | opp_overlap 37751, overlap 37754 AAAAAATGCAAAAAA GGATCAACA TAT TATTGATTC TCTTATTAAAGAACA BDU_1032 37695 - 38183 + | hypothetical protein TERM 65 40072 - 40041 - f 100 -14.8 -4.76123 | opp_overlap 40046 AAATTATGAACAAAA TATAACAGTACAAA TTCT TTTGTACTGTTATA TCAAATAGTATCTAT TERM 66 40046 - 40067 + F 84 -10.3 -3.50869 | opp_overlap 40041 ATGAACAAAATATAA CAGTACAAA TTCT TTTGTACTG TTATATCAAATAGTA TERM 67 40145 - 40188 + F 77 -8.6 -3.49182 | opp_overlap 40149, overlap 40141 40172 ATATATTATCCGATA TTAATATCATTAATTAAAAA ATAT TATTTAATTTATGATATTAA TTAATTGTGATATAT TERM 68 40597 - 40574 - g 78 -9.8 -2.69288 | opp_overlap 40572 40578, overlap 40578 ATAACGAAGAACTTA CAAATTTGTT GGTT AACAAATTTG GATTGTCAGCTCAAC BDU_1034 40393 - 41412 + | hypothetical protein BDU_1035 42318 - 41671 - | hypothetical protein BDU_1036 43311 - 42517 - | hypothetical protein TERM 69 43396 - 43441 + r 77 -9.5 -2.96164 | opp_overlap 43399 43402 43407 43421, overlap 43395 43399 43402 43407 43433 ATATCCATTATATTA TAATAATAAAACTATATTACA ATAA TATAATATAGTTTTATTATAA ATTTATACATAATAT TERM 70 43438 - 43399 - R 100 -13.4 -3.484 | opp_overlap 43399 43396 43395 43402 43407 43433, overlap 43402 43407 43421 TCCATTATATTATAA TAATAAAACTATATTACA ATAA TATAATATAGTTTTATTA TAAATTTATACATAA TERM 71 43399 - 43438 + r 83 -11.2 -2.71325 | opp_overlap 43399 43402 43407 43421, overlap 43396 43395 43402 43407 43433 TCCATTATATTATAA TAATAAAACTATATTACA ATAA TATAATATAGTTTTATTA TAAATTTATACATAA TERM 72 43402 - 43435 + r 77 -8.5 -3.50047 | opp_overlap 43402 43399 43407 43421, overlap 43399 43396 43395 43407 43433 ATTATATTATAATAA TAAAACTATATTACA ATAA TATAATATAGTTTTA TTATAAATTTATACA TERM 73 43435 - 43402 - R 93 -10.7 -3.87505 | opp_overlap 43399 43396 43395 43402 43407 43433, overlap 43399 43407 43421 ATTATATTATAATAA TAAAACTATATTACA ATAA TATAATATAGTTTTA TTATAAATTTATACA TERM 74 43430 - 43407 - R 82 -6.2 -4.9645 | opp_overlap 43407 43402 43399 43396 43395, overlap 43402 43399 43421 ATTATAATAATAAAA CTATATTACA ATAA TATAATATAG TTTTATTATAAATTT TERM 75 43511 - 43547 + r 100 -8.3 -4.95896 | opp_overlap 43517 AACTAAAAGATCACT TTAATAGTAAACCTACA TAT TATAAGTTTACTATTAA TTTTTATCAATTTAT BDU_1037 44588 - 43620 - | hypothetical protein TERM 76 44781 - 44763 - R 76 -3.8 -5.49234 | ATATCTAATAAAAAA GCCTGC CTTAAGT GCAGAC TAATTAGTGAACTGC TERM 77 44795 - 44826 + r 95 -11.2 -4.12603 | gap 1, opp_overlap 44793 ACTAATTAGTGAACT GCTATTTCTA-AATC AAA GATTATAGAAATAGC TTCTTGTTTCATCCC BDU_1038 46044 - 44905 - | transposase IS605 OrfB TERM 78 45894 - 45907 + g 76 -3.9 -5.55664 | TACTTGGATTAACAC TAAGA CTTT TCTTA TTTTTTTCATAATAA TERM 79 46093 - 46129 + r 90 -8.4 -4.64346 | gap 2, opp_overlap 46093 46105, overlap 46090 46094 46095 TACGTTACAAATTCA TA-TCCACCTA-AATTTC ATA GAAATTATAGGTGGAGTA TTCTTTTTAATTTTT TERM 80 46129 - 46093 - R 70 -8.4 -2.7083 | gap 2, opp_overlap 46093 46090 46094 46095, overlap 46105 TACGTTACAAATTCA TA-TCCACCTA-AATTTC ATA GAAATTATAGGTGGAGTA TTCTTTTTAATTTTT TERM 81 46094 - 46127 + r 83 -9.1 -3.87792 | gap 1, opp_overlap 46093 46105, overlap 46093 46090 46095 ACGTTACAAATTCAT ATCCACCTA-AATTTC ATA GAAATTATAGGTGGAG TATTCTTTTTAATTT TERM 82 46095 - 46126 + r 95 -12.6 -2.90235 | gap 1, opp_overlap 46093 46105, overlap 46094 46093 46090 CGTTACAAATTCATA TCCACCTA-AATTTC ATA GAAATTATAGGTGGA GTATTCTTTTTAATT BDU_1039 47242 - 46190 - | hypothetical protein TERM 83 47514 - 47485 - R 83 -3.7 -5.86976 | overlap 47487 47503 CTACAAAATAAAAAA CATAAGTCTACAT TTAA ATGCAAACTTATT TACAAGTTATTTATA TERM 84 47512 - 47487 - R 74 -6.3 -4.55111 | overlap 47485 47503 ACAAAATAAAAAACA TAAGTCTACAT TTAA ATGCAAACTTA TTTACAAGTTATTTA BDU_1040 48617 - 47580 - | hypothetical protein TERM 85 48878 - 48853 - R 100 -11.2 -5.0065 | CATTCATAAATAAAA CTAAGCCTGC ACTTAA GCAGGCTCAG AGAATATTTATACGT BDU_1041 49885 - 48956 - | hypothetical protein BDU_1042 50933 - 50025 - | hypothetical protein BDU_1043 51989 - 51186 - | hypothetical protein BDU_1045 52669 - 53802 + | transposase IS605 OrfB TERM 86 53803 - 53783 - T 88 -6.1 -5.39681 | overlap 53787 ATAAGGAAATAAAAA CTAAGGCAG GAA CTGCCTGAA GTAAAGCTTGTGGAC TERM 87 53799 - 53787 - T 83 -9.1 -3.98991 | overlap 53783 GGAAATAAAAACTAA GGCAG GAA CTGCC TGAAGTAAAGCTTGT TERM 88 53912 - 53881 - T 95 -11.2 -4.12603 | gap 1, opp_overlap 53879 GGGATGAAACAAGAA GCTATTTCTATAATC TTT GATT-TAGAAATAGC AGTTCACTCCCATAA TERM 89 54003 - 53970 - T 100 -10.5 -4.84311 | CTCTATATAATAAAA TTGATGAAGTCCAAA TTTA TATGAACTTCATCAA CGATTAATTAATTAA BDU_1046 54823 - 54050 - | putative lipoprotein TERM 90 55309 - 55288 - R 100 -7.3 -5.53079 | opp_overlap 55288 55293 AAAACATATAAAAAA CAAAACCCA AACA TGGGCTTCG TTTTTCAGTGAATGA BDU_1047 56266 - 55382 - | hypothetical protein BDU_1048 57498 - 56554 - | hypothetical protein TERM 91 58296 - 58276 - g 72 -4.7 -4.97461 | AACAAATACCAAAAA CACCAGAAG AAG CTTATGATG CATTAATTGAAAACT TERM 92 58516 - 58503 - g 76 -4.5 -5.29385 | AATCCAACTAAAAAA CCTGA TATT CCAGG GCTTGATGTTGCGTC BDU_1049 58098 - 58925 + | hypothetical protein TERM 93 59018 - 59041 + F 84 -6 -5.16237 | opp_overlap 59021 59022, overlap 59022 AACTTCATAAAAATA AAAGCCCACA AAGG TGTGGGTTTC TTTTTTCCTAAAATT TERM 94 59038 - 59021 - f 85 -5.5 -5.35224 | opp_overlap 59018 59022, overlap 59022 TTCATAAAAATAAAA GCCCACA AAGG TGTGGGT TTCTTTTTTCCTAAA TERM 95 59022 - 59037 + F 100 -9 -5.0917 | opp_overlap 59022 59021, overlap 59018 TCATAAAAATAAAAG CCCACA AAGG TGTGGG TTTCTTTTTTCCTAA TERM 96 59037 - 59022 - f 81 -9 -3.79508 | opp_overlap 59018 59022, overlap 59021 TCATAAAAATAAAAG CCCACA AAGG TGTGGG TTTCTTTTTTCCTAA TERM 97 59143 - 59125 - f 73 -4 -5.27779 | opp_overlap 59118 59129 59142, overlap 59118 TCTAACATTAAAAAA CAAATAAA TTG TTTATTTA TTATTTATTAATAAT TERM 98 59403 - 59415 + F 78 -4.1 -5.40625 | ATATAAAACAATATT TGTGC TAA GTACA TTTTTTATATGCTGT TERM 99 59912 - 59898 - f 79 -5.8 -4.93316 | overlap 59891 TAAGAACACTAAAAA TTTAGA AAG TCTAAA TGAAATTGCAAAAAT TERM 100 60346 - 60305 - f 100 -9.7 -4.73864 | opp_overlap 60313, overlap 60309 GTAACTAATATAAAA TTATTAAACTAAGTCCATA AATA TGTGGACTTAGTTTACCAA CATCGTCTAACTAAC TERM 101 60342 - 60309 - f 95 -12.7 -2.54961 | opp_overlap 60313, overlap 60305 CTAATATAAAATTAT TAAACTAAGTCCATA AATA TGTGGACTTAGTTTA CCAACATCGTCTAAC TERM 102 60313 - 60338 + F 89 -11.3 -3.54741 | opp_overlap 60309 60305 TATAAAATTATTAAA CTAAGTCCATA AATA TGTGGACTTAG TTTACCAACATCGTC TERM 103 60741 - 60723 - g 88 -7.5 -4.89852 | CCACACTCATAAAAA GCCTTAA TAAAT TTAAGGC ACTATATAATTGCAT BDU_1051 60527 - 61327 + | hypothetical protein TERM 104 62434 - 62406 - g 100 -12.7 -4.81249 | TTGCAAACTCAAAAA TCACTTTAAAACA TTA TGTTCTAAAGTGA TAGATCAAGTGCAAG BDU_1052 61609 - 62481 + | hypothetical protein TERM 105 62607 - 62624 + T 79 -9.9 -3.10164 | opp_overlap 62607 TCGAAAAATAAAAAA GTCCACA AATA TGTGGAC TTAACTAATAACTAA TERM 106 62624 - 62607 - T 100 -9.9 -5.93252 | opp_overlap 62607 TCGAAAAATAAAAAA GTCCACA AATA TGTGGAC TTAACTAATAACTAA BDU_1053 63471 - 62698 - | putative lipoprotein TERM 107 63486 - 63499 + r 71 -2.5 -5.61913 | TTAAATATACTCCTA TATAT ATAA ATATA TTTTTTATGTTTATT TERM 108 63553 - 63563 + r 71 -2.6 -5.57729 | opp_overlap 63553 ACCACAACAATAATA TAAA TTG TTTA TTTTTTATATTATTT TERM 109 63668 - 63656 - R 79 -3.5 -5.71638 | CAATAATCAAAAAAA TTTTT CAT AAAAA TAAAACTATTAAAAT BDU_1054 64724 - 63828 - | putative lipoprotein BDU_1055 65750 - 64878 - | hypothetical protein TERM 110 64978 - 64966 - G 72 -6.3 -4.32436 | opp_overlap 64966 64964 ACAGGAGCATCAAAA GGATT AAA AATCC TATTATAAATATCAC BDU_1056 66765 - 65968 - | putative lipoprotein BDU_1057 67689 - 66901 - | putative lipoprotein TERM 111 67505 - 67517 + g 72 -6.3 -4.43272 | AATGACTCATAATTG GAATG AAA CATTC TTTTAAATTTTAAGT BDU_1058 68493 - 67717 - | putative lipoprotein BDU_1059 69288 - 68512 - | putative lipoprotein TERM 112 69513 - 69474 - R 82 -10.4 -2.57988 | opp_overlap 69474 69477 69479, overlap 69479 TACTATAATCAATAT TAAAATATCCAATTAATT AATC AACTAATTGGATATATTA TATTAATATACATAA TERM 113 69474 - 69513 + r 70 -8.2 -3.20573 | opp_overlap 69474 69479, overlap 69477 69479 TACTATAATCAATAT TAAAATATCCAATTAATT AATC AACTAATTGGATATATTA TATTAATATACATAA TERM 114 69508 - 69479 - R 91 -10.3 -4.46404 | opp_overlap 69477 69474 69479, overlap 69474 TAATCAATATTAAAA TATCCAATTAATT AATC AACTAATTGGATA TATTATATTAATATA TERM 115 69479 - 69508 + r 72 -8.1 -3.44793 | opp_overlap 69479 69474, overlap 69477 69474 TAATCAATATTAAAA TATCCAATTAATT AATC AACTAATTGGATA TATTATATTAATATA TERM 116 70116 - 70084 - R 91 -12.3 -3.29861 | opp_overlap 70084 70087, overlap 70064 70087 70090 AACTTAATAAGTTAA TAATAACTACCTCTA AAT TAGAAGTAGCTATTA TTTATATAGAATATT TERM 117 70084 - 70116 + r 80 -7.9 -4.06148 | opp_overlap 70064 70084 70087 70090, overlap 70087 AACTTAATAAGTTAA TAATAACTACCTCTA AAT TAGAAGTAGCTATTA TTTATATAGAATATT TERM 118 70113 - 70087 - R 83 -9.6 -3.77953 | opp_overlap 70084 70087, overlap 70084 70090 TTAATAAGTTAATAA TAACTACCTCTA AAT TAGAAGTAGCTA TTATTTATATAGAAT TERM 119 70110 - 70090 - R 83 -9.1 -4.00097 | opp_overlap 70087 70084, overlap 70087 70084 ATAAGTTAATAATAA CTACCTCTA AAT TAGAAGTAG CTATTATTTATATAG BDU_1060 71235 - 70138 - | hypothetical protein TERM 120 70728 - 70748 + g 89 -6.2 -5.43866 | CTCTAGATTCAAATG CAGCATAA ACTTC TTGTGCTG TTTTTTTAGGAATTA TERM 121 71389 - 71361 - R 100 -6.2 -5.52909 | opp_overlap 71361 TAATATTTAAAAAAA TCTTGAGATT CCAATTCAC AATCTCAAGA TTTTTCTTTAATTTA TERM 122 71361 - 71389 + r 93 -6.2 -5.41941 | opp_overlap 71361 TAATATTTAAAAAAA TCTTGAGATT CCAATTCAC AATCTCAAGA TTTTTCTTTAATTTA BDU_1061 72291 - 71575 - | putative lipoprotein TERM 123 72456 - 72444 - R 77 -4.9 -5.18297 | GAATAACAAATAAAA TGTAT GAT ATACA CGATATTCATTACAT TERM 124 72476 - 72496 + r 78 -7.1 -4.57073 | opp_overlap 72476 72471 ATTCATTACATAAAA TTTATATTT AAT AAATATAAA TTTTTAACACCAATA TERM 125 72496 - 72476 - R 78 -7.1 -4.57755 | opp_overlap 72476, overlap 72471 ATTCATTACATAAAA TTTATATTT AAT AAATATAAA TTTTTAACACCAATA BDU_1062 73261 - 72521 - | hypothetical protein TERM 126 73493 - 73464 - R 100 -13.1 -5.59962 | opp_overlap 73464 TAAAACAAACAAAAA CATTAAATGAGCT TATA AGCCCATTTAATG TTTAATTTATAACCA TERM 127 73464 - 73493 + r 93 -10.9 -4.13995 | opp_overlap 73464 TAAAACAAACAAAAA CATTAAATGAGCT TATA AGCCCATTTAATG TTTAATTTATAACCA BDU_1063 74556 - 73495 - | putative viral A-type inclusion protein repeat TERM 128 73873 - 73855 - G 71 -7.6 -3.63341 | opp_overlap 73847, overlap 73858 AATATTTGTTAACAA TAACTTAT CAA ATAAGTTA CCCAACCTTGCAATA BDU_1064 75754 - 74894 - | hypothetical protein BDU_1065 76699 - 75782 - | hypothetical protein BDU_1066 77404 - 76799 - | hypothetical protein BDU_1067 78182 - 77574 - | hypothetical protein BDU_1068 78889 - 78368 - | hypothetical protein BDU_1069 79135 - 78905 - | putative lipoprotein BDU_1070 80219 - 79323 - | hypothetical protein TERM 129 80319 - 80350 + r 75 -7.6 -4.18018 | opp_overlap 80318 80316 80310 80321, overlap 80303 80321 CATATATTTAAATAT GATTACTTAAAAAT ATTT ATTTTTAAGTAATA TTTTAAATGCAAAAA TERM 130 80321 - 80348 + r 85 -10.2 -3.69216 | opp_overlap 80318 80316 80310 80321, overlap 80319 TATATTTAAATATGA TTACTTAAAAAT ATTT ATTTTTAAGTAA TATTTTAAATGCAAA TERM 131 80348 - 80321 - R 79 -10.2 -2.86838 | opp_overlap 80321 80319, overlap 80318 80316 80310 TATATTTAAATATGA TTACTTAAAAAT ATTT ATTTTTAAGTAA TATTTTAAATGCAAA TERM 132 81304 - 81259 - R 74 -5.1 -4.80455 | gap 1, opp_overlap 81266 81268 81272 81276, overlap 81265 81266 81268 81276 CAGTTAAATATAAAA TACAAATGAGAAATAAAGACTT AAC AAGTCTCTATTTCT-ATCTATT TCAATTAATACTTAA TERM 133 81298 - 81265 - R 85 -8.5 -4.55004 | gap 1, opp_overlap 81266 81268 81272 81276, overlap 81259 81266 81268 81276 AATATAAAATACAAA TGAGAAATAAAGACTT AAC AAGTCTCTATTTCT-A TCTATTTCAATTAAT TERM 134 81298 - 81266 - R 82 -10.1 -3.30562 | opp_overlap 81266 81268 81272 81276, overlap 81265 81259 81268 81276 ATATAAAATACAAAT GAGAAATAAAGACTT AAC AAGTCTCTATTTCTA TCTATTTCAATTAAT TERM 135 81266 - 81298 + r 72 -7.9 -3.30507 | opp_overlap 81265 81259 81266 81268 81276, overlap 81268 81272 81276 ATATAAAATACAAAT GAGAAATAAAGACTT AAC AAGTCTCTATTTCTA TCTATTTCAATTAAT TERM 136 81296 - 81268 - R 100 -12.7 -3.19413 | opp_overlap 81268 81266 81272 81276, overlap 81265 81266 81259 81276 ATAAAATACAAATGA GAAATAAAGACTT AAC AAGTCTCTATTTC TATCTATTTCAATTA TERM 137 81268 - 81296 + r 85 -10.5 -3.211 | opp_overlap 81265 81266 81259 81268 81276, overlap 81266 81272 81276 ATAAAATACAAATGA GAAATAAAGACTT AAC AAGTCTCTATTTC TATCTATTTCAATTA TERM 138 81288 - 81276 - R 76 -6.3 -4.65032 | opp_overlap 81272 81268 81266 81276, overlap 81268 81265 81266 81259 CAAATGAGAAATAAA GACTT AAC AAGTC TCTATTTCTATCTAT BDU_1071 82122 - 81316 - | hypothetical protein TERM 139 82171 - 82157 - R 73 -2.2 -5.73672 | AAATAATTAAAAAAA TCAATA TTC TATTAA CCAACCTTTTGAAAT BDU_1072 83030 - 82311 - | putative lipoprotein TERM 140 83008 - 82991 - G 72 -6.3 -4.33153 | CCGAATAGCAAGAAA GTATGCT AAAA AGCACAC ACAAAATAAAAACTA TERM 141 83154 - 83178 + r 90 -11.6 -3.0458 | opp_overlap 83154 83159, overlap 83159 ACCTTTTAATAACAA TTAAAGGACC ATAAA GGTCCTTTAA TCTATAAATTTTTTA TERM 142 83178 - 83154 - R 100 -11.6 -3.94877 | opp_overlap 83154 83159, overlap 83159 ACCTTTTAATAACAA TTAAAGGACC ATAAA GGTCCTTTAA TCTATAAATTTTTTA TERM 143 83159 - 83173 + r 71 -7.1 -3.89614 | opp_overlap 83154 83159, overlap 83154 TTAATAACAATTAAA GGACC ATAAA GGTCC TTTAATCTATAAATT TERM 144 83173 - 83159 - R 73 -7.1 -4.14945 | opp_overlap 83159 83154, overlap 83154 TTAATAACAATTAAA GGACC ATAAA GGTCC TTTAATCTATAAATT BDU_1073 83977 - 83180 - | hypothetical protein TERM 145 85145 - 85121 - R 75 -4.5 -5.2112 | opp_overlap 85128, overlap 85110 AATATTATTAAAAAA TAAAATATAAT GCT ATTATTTTTTA ACATATTAATAAAAC TERM 146 85262 - 85252 - R 71 -2.6 -5.48163 | overlap 85244 AAATAAATTAAAAAA TTTT AAA AAAA AATAAACAATTGTTT TERM 147 85304 - 85265 - R 100 -6.8 -6.10489 | opp_overlap 85269 85272, overlap 85269 85272 AATTTTAAAAAAAAA TAAACAATTGTTTATATA AATT TATATAAACAATCAATTA TAATCATCAAAATAT TERM 148 85300 - 85269 - R 95 -7.6 -5.45056 | opp_overlap 85269 85272, overlap 85265 85272 TTAAAAAAAAATAAA CAATTGTTTATATA AATT TATATAAACAATCA ATTATAATCATCAAA TERM 149 85272 - 85297 + r 72 -9.3 -2.62024 | opp_overlap 85272 85269 85265, overlap 85269 AAAAAAAATAAACAA TTGTTTATATA AATT TATATAAACAA TCAATTATAATCATC TERM 150 85297 - 85272 - R 91 -9.3 -4.68355 | opp_overlap 85269 85272, overlap 85269 85265 AAAAAAAATAAACAA TTGTTTATATA AATT TATATAAACAA TCAATTATAATCATC nrdF 86285 - 85320 - | ribonucleoside-diphosphate reductase beta subunit TERM 151 86086 - 86072 - G 74 -8.6 -3.2614 | opp_overlap 86072 86074 TACGTGGCATACCAA CAGAAC CTT GTTCTG TGTCTAATAATGTAA TERM 152 86072 - 86086 + g 73 -8.6 -2.97188 | opp_overlap 86072, overlap 86074 TACGTGGCATACCAA CAGAAC CTT GTTCTG TGTCTAATAATGTAA nrdE 88453 - 86330 - | ribonucleoside-diphosphate reductase, alpha subunit nrdI 88742 - 88377 - | ribonucleoprotein BDU_1078 89636 - 88818 - | thymidylate synthase protein BDU_1079 90066 - 90905 + | p23-like cell envelope protein TERM 153 90967 - 90918 - f 90 -5.6 -5.69068 | gap 2, opp_overlap 90918 90934 TAAAAATATAAAAAA TTCTACAATTAATACTTAAGATTT CAGT AATTCTT-A-TATTAATTGTAGAA TTACTCAGACTTATT TERM 154 91501 - 91485 - g 70 -3.1 -5.252 | opp_overlap 91488, overlap 91489 TACTTGGATAAAAAA CAATTTT CAA AAAATTA TTGAAACAGATACAC BDU_1080 91207 - 92037 + | p23-like cell envelope protein TERM 155 92038 - 92060 + T 100 -12.2 -4.2349 | opp_overlap 92038, overlap 92031 GCACCTGTTGATTAA TCTGATCATT CCT AATGATCAGA TTTTAAATATCAACA TERM 156 92060 - 92038 - T 91 -12.2 -3.14564 | opp_overlap 92031 92038 GCACCTGTTGATTAA TCTGATCATT CCT AATGATCAGA TTTTAAATATCAACA BDU_1081 92752 - 92108 - | hypothetical protein TERM 157 92786 - 92774 - R 73 -3.5 -5.30616 | opp_overlap 92774 TTATTTAAACAAAAA TTAAT AAA ATTAA TTAATTAAACTTCAA BDU_1082 93544 - 92927 - | hypothetical protein BDU_1083 94519 - 93578 - | hypothetical protein BDU_1084 95758 - 94631 - | outer membrane protein TERM 158 95772 - 95794 + r 82 -8 -4.26189 | opp_overlap 95772 ATTCTCCTAAATAAA TATAATTATA TTA TATAATTATA TTTTAACCTTTATAA TERM 159 95794 - 95772 - R 83 -8 -4.41616 | opp_overlap 95772 ATTCTCCTAAATAAA TATAATTATA TTA TATAATTATA TTTTAACCTTTATAA BDU_1085 96363 - 95797 - | hypothetical protein BDU_1086 97854 - 96388 - | hypothetical protein BDU_1087 98086 - 97868 - | hypothetical protein BDU_1088 98533 - 98111 - | hypothetical protein BDU_1089 98959 - 98537 - | hypothetical protein BDU_1090 100032 - 98956 - | hypothetical protein TERM 160 100047 - 100069 + r 84 -5.8 -5.10526 | opp_overlap 100053, overlap 100048 TATTATCTCCTATTT TTAAATTTAA CTT TTAAGTTTAA TTTATTTTTTAATCT TERM 161 100048 - 100073 + r 80 -4.9 -5.28755 | opp_overlap 100053, overlap 100047 ATTATCTCCTATTTT TAAATTTAACT TTTA AGTTTAATTTA TTTTTTAATCTATTT BDU_1091 100626 - 100078 - | hypothetical protein TERM 162 100232 - 100246 + g 86 -7.2 -5.07652 | opp_overlap 100222 AAAGATAAATCATAT TCCTTT TCT AAAGGA TTTTGTTTTAAAAAC TERM 163 100541 - 100561 + g 71 -8.5 -2.85297 | opp_overlap 100533 TTGATAATCTTCACT TTTAAAGAA TGT TTCTTTAAA TAATCTTTAAACTCA BDU_1092 101033 - 100659 - | hypothetical protein BDU_1093 101434 - 101030 - | hypothetical protein BDU_1094 102348 - 101425 - | hypothetical protein TERM 164 102416 - 102400 - R 73 -6.7 -4.1196 | opp_overlap 102381 102400 AATTTATTTTTAAAA TTGAATT ATT AATTCAA TTACTATTTAAATTA BDU_1095 103038 - 102445 - | hypothetical protein BDU_1096 103654 - 103094 - | hypothetical protein BDU_1097 104862 - 103651 - | hypothetical protein TERM 165 104696 - 104712 + g 70 -8.1 -3.02166 | opp_overlap 104696 104694 104699, overlap 104699 CTACTATAATCAAGA GAATCTT TGA AAGATTC TAATTTAATTCCACA TERM 166 104712 - 104696 - G 71 -8.1 -3.30783 | opp_overlap 104696 104699, overlap 104694 104699 CTACTATAATCAAGA GAATCTT TGA AAGATTC TAATTTAATTCCACA TERM 167 104921 - 104866 - R 73 -6.8 -4.1043 | gap 1, opp_overlap 104873, overlap 104870 104873 104878 TTTAAATATCATAAA TTAATT-ATATCATTGATATTTAACTT TGT AAATTAAATATCAAAAATATCAATCAA ATTTACAAATAATTA TERM 168 104913 - 104873 - R 71 -8.7 -2.92669 | opp_overlap 104873, overlap 104870 104866 104878 ATCATAAATTAATTA TATCATTGATATTTAACTT TGT AAATTAAATATCAAAAATA TCAATCAAATTTACA TERM 169 104908 - 104878 - R 82 -10.8 -2.72052 | opp_overlap 104873, overlap 104873 104870 104866 AAATTAATTATATCA TTGATATTTAACTT TGT AAATTAAATATCAA AAATATCAATCAAAT TERM 170 105057 - 105026 - R 100 -9.6 -4.7908 | overlap 105027 AAAAATATAAATAAA TTTACCTTAAGACC CAAA AGTCTTAAGGTAAG TAACTAAATTTATAA TERM 171 105056 - 105027 - R 100 -13.1 -3.43788 | overlap 105026 AAAATATAAATAAAT TTACCTTAAGACC CAAA AGTCTTAAGGTAA GTAACTAAATTTATA BDU_1098 106398 - 105118 - | putative lipoprotein TERM 172 105636 - 105648 + g 80 -6.3 -4.84017 | opp_overlap 105636 CTATAAGAGCAATAA CATCT TTA AGATG TTTTTCTAAAAAATT TERM 173 107831 - 107803 - H 93 -9 -4.86613 | opp_overlap 107806 CAAAATTAAAAGAAA CAATCTCCATCA ATATA CGATGGAGATTA ATATTAATTCATATT TERM 174 107806 - 107828 + H 72 -7.8 -3.42548 | opp_overlap 107803 AATTAAAAGAAACAA TCTCCATC AATATAC GATGGAGA TTAATATTAATTCAT TERM 175 108302 - 108288 - H 70 -3.6 -5.10077 | opp_overlap 108288, overlap 108278 AAATATTGTAAAAAA TTTTGA CAA CCAAAA TATTGCAAACAAAAA TERM 176 109307 - 109322 + H 100 -4.8 -6.23545 | opp_overlap 109307, overlap 109296 ATATTATTTTAAAAA TATCAA TTTT TTGATA TTTTTTTTATTTAAA TERM 177 109860 - 109847 - g 70 -6.7 -3.9074 | overlap 109845 AATAAGTACAAAATA GCTCT TAAA AGAGC TGCCAATCAAGAATT BDU_1101 109403 - 110425 + | putative lipoprotein TERM 178 110458 - 110494 + F 100 -7 -6.23545 | gap 1, opp_overlap 110458, overlap 110453 TGTAAAATTTTTAAA CTTTAATTTTAA-CTAT GATT GTAGATTAAAATTAAAG TTTTTTTTATTTAAC TERM 179 113990 - 113972 - g 73 -3.2 -5.51165 | AAAACTTTAAAAAAA TCAATTTT CAC AAATTTGA AGAAATAAAAGCTCA BDU_1103 112624 - 114039 + | lipoprotein BDU_1104 114184 - 115617 + | putative lipoprotein TERM 180 115689 - 115654 - T 86 -5 -5.67283 | opp_overlap 115656 115657, overlap 115657 115673 AATTTAAATAAAAAA CAATCATTTATTTACA AACT TATAAATAAATGACTT TTATTTAAAAATAAT TERM 181 115686 - 115657 - T 93 -8.9 -4.88687 | opp_overlap 115656 115657, overlap 115654 115673 TTAAATAAAAAACAA TCATTTATTTACA AACT TATAAATAAATGA CTTTTATTTAAAAAT TERM 182 116964 - 116938 - T 72 -3.2 -5.40873 | gap 1, opp_overlap 116938 AATACAAAAATAAAA TCTCCAT-TTA GTTATA TAAGATGGAGA TTCTCATTTAATTTT TERM 183 117041 - 117002 - T 86 -6.6 -5.16038 | ATAGAATAAATAAAA TAAGAACCTACCTAATAT TCAA ATCTCAGGCAAGTCCTTA TTTATATTACAGGGT BDU_1106 119379 - 117106 - | hypothetical protein TERM 184 117818 - 117786 - G 70 -7.7 -3.46509 | overlap 117780 117788 117789 117791 CGTGAATAACACCAA TAGCAGCTTCTGCAC CTT GTACAGCAGCTGTCA CTAAAGTATCTGCTT TERM 185 117816 - 117788 - G 71 -8.1 -3.29958 | overlap 117786 117780 117789 117791 TGAATAACACCAATA GCAGCTTCTGCAC CTT GTACAGCAGCTGT CACTAAAGTATCTGC TERM 186 117815 - 117789 - G 87 -11.6 -2.57252 | overlap 117788 117786 117780 117791 GAATAACACCAATAG CAGCTTCTGCAC CTT GTACAGCAGCTG TCACTAAAGTATCTG TERM 187 117813 - 117791 - G 71 -8.4 -2.81181 | overlap 117789 117788 117786 117780 ATAACACCAATAGCA GCTTCTGCAC CTT GTACAGCAGC TGTCACTAAAGTATC TERM 188 119474 - 119426 - R 100 -13.6 -4.47163 | opp_overlap 119431, overlap 119431 AAGGAAAATAAATAA TAAAAGGGTTATCTTTAAAATC TCTAT AATCTTAAAGATAACCCTTTAA ATGACAAATATCAAT TERM 189 119469 - 119431 - R 100 -13.5 -5.10765 | opp_overlap 119431, overlap 119426 AAATAAATAATAAAA GGGTTATCTTTAAAATC TCTAT AATCTTAAAGATAACCC TTTAAATGACAAATA TERM 190 119431 - 119469 + r 87 -10.6 -3.6502 | opp_overlap 119431 119426 AAATAAATAATAAAA GGGTTATCTTTAAAAT CTCTATA ATCTTAAAGATAACCC TTTAAATGACAAATA BDU_1107 120555 - 119569 - | hypothetical protein BDU_1108 121465 - 120749 - | hypothetical protein BDU_1109 122072 - 121512 - | hypothetical protein BDU_1110 122308 - 123123 + | p23-like cell envelope protein TERM 191 123180 - 123217 + F 100 -8.9 -5.03405 | gap 1, opp_overlap 123178 123180 123185, overlap 123183 123185 ATTACATAAATAATA TTGA-ACGTATAAATAAT AAT ATTATTTATACGTATTAA TTTTTATCTACTATT TERM 192 123183 - 123213 + F 88 -10 -3.91281 | opp_overlap 123180 123178 123185, overlap 123180 123185 ACATAAATAATATTG AACGTATAAATAAT AAT ATTATTTATACGTA TTAATTTTTATCTAC TERM 193 123185 - 123211 + F 100 -12.6 -3.52689 | opp_overlap 123180 123178 123185, overlap 123183 123180 ATAAATAATATTGAA CGTATAAATAAT AAT ATTATTTATACG TATTAATTTTTATCT TERM 194 123211 - 123185 - f 100 -12.6 -3.27213 | opp_overlap 123185 123183 123180, overlap 123180 123178 ATAAATAATATTGAA CGTATAAATAAT AAT ATTATTTATACG TATTAATTTTTATCT TERM 195 123540 - 123525 - g 70 -4.8 -4.74453 | GAATACATTGAAAAA TTTGAA GACC TTCAAA GTAGAACAACAAATC TERM 196 123745 - 123733 - g 74 -4.9 -5.10163 | opp_overlap 123733 AACTTCAAAATAAAA TAAGA TAT TCTTA TTCAATATCACCTAT TERM 197 123953 - 123974 + G 73 -8.1 -3.35798 | opp_overlap 123950 123948 123953 123969 AAAATCACAAGAGAG TGGATATGT TAAT GCATATCCA TTCTGGATAGCAAAT BDU_1111 123387 - 124187 + | p23-like cell envelope protein TERM 198 124269 - 124224 - f 100 -12.1 -4.7078 | opp_overlap 124224 124227 TTAATTATTTAAAAA CAAGATTCTACACTACAGCTT AAGC AAACAATAGTGTAGGATCTTG TATCATAATAACGTT TERM 199 124224 - 124269 + F 79 -9.9 -2.83012 | opp_overlap 124224, overlap 124227 TTAATTATTTAAAAA CAAGATTCTACACTACAGCTT AAGC AAACAATAGTGTAGGATCTTG TATCATAATAACGTT TERM 200 124432 - 124421 - f 75 -3 -5.50774 | opp_overlap 124421 CACAACAAACAAAAA TCTT AAAT AAGA TATATGCATCTACCT TERM 201 124958 - 124942 - g 76 -6.7 -4.56775 | opp_overlap 124941 AGCTCTTGCTAAAAA CTTTAAT GAT ATTAAAG ATGCATTGCCTAAAG BDU_1112 124709 - 125239 + | hypothetical protein TERM 202 125327 - 125354 + T 95 -10 -4.67651 | opp_overlap 125328, overlap 125328 TCAGATAGATTAATA ACAGATGTACTA CCAG TAGTACATCTGA TTTATTTTAAACTCT TERM 203 125328 - 125353 + T 100 -13.5 -3.39506 | opp_overlap 125328, overlap 125327 CAGATAGATTAATAA CAGATGTACTA CCAG TAGTACATCTG ATTTATTTTAAACTC TERM 204 125353 - 125328 - T 100 -13.5 -3.81089 | opp_overlap 125328 125327 CAGATAGATTAATAA CAGATGTACTA CCAG TAGTACATCTG ATTTATTTTAAACTC TERM 205 125524 - 125555 + T 81 -7.5 -4.60746 | opp_overlap 125524 125529, overlap 125529 AATTACTTTAAATAA TAAAAGCTAAAGT CATTGT ACTCTAGCTTTTA TTTTAATGTTTTTAC TERM 206 125555 - 125524 - T 86 -9.7 -3.95036 | opp_overlap 125524 125529, overlap 125529 AATTACTTTAAATAA TAAAAGCTAAAGT CATTGT ACTCTAGCTTTTA TTTTAATGTTTTTAC TERM 207 125550 - 125529 - T 77 -5.2 -5.00196 | opp_overlap 125529 125524, overlap 125524 CTTTAAATAATAAAA GCTAAAGT CATTGT ACTCTAGC TTTTATTTTAATGTT bsr 126969 - 125617 - | bsr protein TERM 208 125697 - 125687 - G 72 -6.8 -4.15114 | AAGAGCAAATAACAA GCAC TAA GTGC ATCAAGAGCATCATC BDU_1114 127523 - 126972 - | hypothetical protein TERM 209 127647 - 127622 - R 81 -7.7 -4.71401 | opp_overlap 127626 127628, overlap 127624 AATAAAACCACAAAA TAGATATTGGA CTAA TCCAATATCTT AAGAAAAGGAGAAAA TERM 210 127645 - 127624 - R 88 -10.3 -3.9392 | opp_overlap 127626 127628, overlap 127622 TAAAACCACAAAATA GATATTGGA CTAA TCCAATATC TTAAGAAAAGGAGAA TERM 211 127883 - 127832 - R 70 -7.6 -3.65109 | gap 1, overlap 127838 ATACAAAAACATTAA TCAC-AATCCTCTCACGTCAAGA ATTTTTG TCTTGACGTGAGAGAACTCACAA AAATATTCCTAACAA TERM 212 127876 - 127838 - R 100 -17 -3.57161 | overlap 127832 AAACATTAATCACAA TCCTCTCACGTCAAGA ATTTTTG TCTTGACGTGAGAGAA CTCACAAAAATATTC TERM 213 127961 - 127909 - R 100 -16.8 -3.39429 | gap 1, opp_overlap 127914, overlap 127914 AACAACTCTTAAATA TTAAAGGGTTTATTGGAA-ACTCTG GCCT CAAAGTACCCCAATAAACCCTTTAA GGTAACAGGTCCTTA TERM 214 127956 - 127914 - R 100 -12.3 -4.00532 | gap 1, opp_overlap 127914, overlap 127909 CTCTTAAATATTAAA GGGTTTATTGGAA-ACTCTG GCCT CAAAGTACCCCAATAAACCC TTTAAGGTAACAGGT TERM 215 128042 - 128068 + r 73 -2.4 -5.75342 | opp_overlap 128050, overlap 128050 CAATTTAAAACATTT TGCAAACATTTT TTT AAAATTTTTTCA TTTTTTTTAAAAAAC TERM 216 128050 - 128060 + r 71 -2.6 -5.62552 | opp_overlap 128050, overlap 128042 AACATTTTGCAAACA TTTT TTT AAAA TTTTTTCATTTTTTT pf49 128858 - 128307 - | PF49 plasmid partition protein TERM 217 128871 - 128895 + r 91 -12.3 -3.47345 | overlap 128872 CAACCCTCCTTTGCT TTTACGTACAC TAA GTGTACGTAAG TTATAATGTAAGCTT TERM 218 128872 - 128894 + r 100 -13.6 -2.67925 | overlap 128871 AACCCTCCTTTGCTT TTACGTACAC TAA GTGTACGTAA GTTATAATGTAAGCT pf32 129664 - 128909 - | PF32 plasmid partition protein ppap1 130203 - 129640 - | plasmid partitioning associated protein-1 ppap2 131340 - 130231 - | plasmid partionning associated protein 2 TERM 219 131434 - 131447 + r 74 -2.5 -5.63504 | opp_overlap 131429 131434 TAGCAAATATGAAAA TAAAT TAAT ATTTA TTTTTTTATAAGATT TERM 220 131656 - 131643 - R 76 -3.9 -5.47821 | opp_overlap 131643 AGTCATGTAAAAAAA TTTCA TGGA TGAAA TTATCAATTTTGTGT TERM 221 131683 - 131714 + r 75 -7.6 -4.12603 | gap 1 GTGTTTGAGTGAACT GTTATTTCTA-AATC AAA GATTATAGAAATAGC TTCTTGTTTCATCCC TERM 222 131792 - 131812 + r 88 -6.1 -5.39681 | overlap 131796 GTCCACAAGCTTTAC TTCAGGCAG TTC CTGCCTTAG TTTTTATTTCCTTAT TERM 223 131796 - 131808 + r 83 -9.1 -3.98991 | overlap 131792 ACAAGCTTTACTTCA GGCAG TTC CTGCC TTAGTTTTTATTTCC BDU_1119 132926 - 131793 - | transposase IS605 OrfB BDU_1120 132960 - 133379 + | transposase-like protein TERM 224 133377 - 133434 + T 100 -26.3 -4.25064 | gap 1, opp_overlap 133380 133384, overlap 133384 AATAAATCCATTTAT TAACAAAGAATTCTCCACCTATAATTTC TAT GAAGTT-TAGGTGGAGAATTCTTTGTTA TTATTTGTTAAATTT TERM 225 133431 - 133380 - T 100 -21.4 -3.19656 | gap 1, opp_overlap 133377 133384, overlap 133384 AAATCCATTTATTAA CAAAGAATTCTCCACCTATAATTTC TAT GAAGTT-TAGGTGGAGAATTCTTTG TTATTATTTGTTAAA TERM 226 133384 - 133427 + T 100 -18.6 -4.64159 | gap 1, opp_overlap 133380 133384, overlap 133377 CCATTTATTAACAAA GAATTCTCCACCTATAATTTC TAT GAAGTT-TAGGTGGAGAATTC TTTGTTATTATTTGT TERM 227 133427 - 133384 - T 100 -16.4 -4.258 | gap 1, opp_overlap 133384 133377, overlap 133380 CCATTTATTAACAAA GAATTCTCCACCTATAATTTC TAT GAAGTT-TAGGTGGAGAATTC TTTGTTATTATTTGT TERM 228 133552 - 133526 - T 100 -15.4 -3.25758 | opp_overlap 133532, overlap 133517 133532 ATATAATTAATTTAA TTTAAAGTCCCA CAT TGGGACTTTAAA AAAAGAGTAAGAAGG TERM 229 133546 - 133532 - T 85 -10 -3.78409 | opp_overlap 133532, overlap 133526 133517 TTAATTTAATTTAAA GTCCCA CAT TGGGAC TTTAAAAAAAGAGTA TERM 230 133532 - 133546 + T 84 -10 -3.53224 | opp_overlap 133532 133526 133517 TTAATTTAATTTAAA GTCCCA CAT TGGGAC TTTAAAAAAAGAGTA BDU_1121 133953 - 133588 - | putative lipoprotein BDU_1122 134333 - 133950 - | hypothetical protein BDU_1123 135785 - 134673 - | hypothetical protein BDU_1124 136404 - 135823 - | hypothetical protein BDU_1125 137268 - 136408 - | hypothetical protein TERM 231 136819 - 136840 + g 71 -7.3 -3.74516 | opp_overlap 136819, overlap 136821 136835 TATTTTTCCTCTAAA TGCTGTTCC ACAT GGAGCAGTA TTATATATTGCTTTC TERM 232 136821 - 136838 + g 70 -7.7 -3.43636 | opp_overlap 136819, overlap 136819 136835 TTTTTCCTCTAAATG CTGTTCC ACAT GGAGCAG TATTATATATTGCTT BDU_1126 137594 - 137265 - | hypothetical protein TERM 233 137708 - 137674 - H 83 -4.6 -5.52384 | opp_overlap 137684 137693 137706, overlap 137655 137678 137701 TTTTTATTAAAAAAA TCAATTTATTTAAACA TTT TATTTAAACAAATTTA AATATTAATTTAGAT TERM 234 137761 - 137737 - H 100 -14.5 -5.24531 | overlap 137758 ATTTGGTATAAAAAA GAGACTCTTTA CTT TAAAGAGTCTC CAAGGTGAGAAGAAT TERM 235 138376 - 138335 - H 82 -10.5 -2.76605 | opp_overlap 138340 138347 138375, overlap 138334 138361 138365 AAATAGAATTATAAT TTCTTTTAGCAATATGTAT AAAA ATACATATTGCTAATATAA TCACTAGCAAATAGC TERM 236 138340 - 138371 + H 100 -14.8 -2.80816 | opp_overlap 138335 138334 138361 138365, overlap 138347 GAATTATAATTTCTT TTAGCAATATGTAT AAAA ATACATATTGCTAA TATAATCACTAGCAA TERM 237 138375 - 138399 + H 72 -7.2 -3.80018 | opp_overlap 138335 138334 138365 138377, overlap 138377 ACATATTGCTAATAT AATCACTAGC AAATA GCTAGTGATA TTGTTAATATATAAG TERM 238 138377 - 138397 + H 82 -9.8 -3.48053 | opp_overlap 138365 138377, overlap 138375 ATATTGCTAATATAA TCACTAGC AAATA GCTAGTGA TATTGTTAATATATA TERM 239 138397 - 138377 - H 83 -9.8 -3.67052 | opp_overlap 138377 138375, overlap 138365 ATATTGCTAATATAA TCACTAGC AAATA GCTAGTGA TATTGTTAATATATA BDU_1127 138936 - 139724 + | putative lipoprotein TERM 240 139851 - 139824 - f 85 -10.8 -3.24017 | opp_overlap 139824, overlap 139819 AATTTTATAAGTGAA TTACCAGAAAAT GTTT ATTTCCTGGTAA TTTGTTATTTGTTAA TERM 241 139824 - 139851 + F 90 -8.6 -4.67968 | opp_overlap 139819 139824 AATTTTATAAGTGAA TTACCAGAAAAT GTTT ATTTCCTGGTAA TTTGTTATTTGTTAA BDU_1128 140223 - 141326 + | hypothetical protein TERM 242 141493 - 141451 - f 70 -3.7 -5.25735 | gap 2, opp_overlap 141453 141455 141468, overlap 141454 141456 TCAAAAAATTAAAAA GAATACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-ATGA ATTTGTAACGTAAGT TERM 243 141490 - 141454 - f 95 -9.8 -4.64346 | gap 2, opp_overlap 141453 141455 141468, overlap 141451 141456 AAAAATTAAAAAGAA TACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-A TGAATTTGTAACGTA TERM 244 141455 - 141490 + F 83 -11.4 -2.7083 | gap 1, opp_overlap 141454 141451 141456, overlap 141453 141468 AAAATTAAAAAGAAT ACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAGA TGAATTTGTAACGTA TERM 245 141489 - 141456 - f 100 -14.9 -3.87792 | gap 1, opp_overlap 141455 141453 141468, overlap 141454 141451 AAATTAAAAAGAATA CTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG ATGAATTTGTAACGT TERM 246 141689 - 141676 - g 76 -3.9 -5.55664 | TTATTATGAAAAAAA TAAGA AAAG TCTTA GTGTTAATCCAAGTA BDU_1129 141539 - 142672 + | transposase IS605 OrfB TERM 247 142673 - 142653 - f 88 -6.1 -5.39681 | overlap 142657 ATAAGGAAATAAAAA CTAAGGCAG GAA CTGCCTGAA GTAAAGCTTGTGGAC TERM 248 142669 - 142657 - f 83 -9.1 -3.98991 | overlap 142653 GGAAATAAAAACTAA GGCAG GAA CTGCC TGAAGTAAAGCTTGT TERM 249 142782 - 142751 - f 95 -11.2 -4.12603 | gap 1 GGGATGAAACAAGAA GCTATTTCTATAATC TTT GATT-TAGAAATAGC AGTTCACAGAGGAAT BDU_1130 142803 - 143861 + | hypothetical protein TERM 250 144014 - 144030 + G 73 -4.5 -5.11881 | opp_overlap 144017 ATTTAGTGTTTAGAG TAAGAAA AGG TTTCTTG TTGTTTTTTTTATTT TERM 251 144114 - 144100 - g 72 -5.8 -4.62475 | overlap 144077 144095 ATTGATAAATCAAAA CATTTT GGC AAAATG AAAAGTGTTAAAAGA BDU_1131 143986 - 145239 + | hypothetical protein TERM 252 145523 - 145479 - f 75 -4.5 -5.10461 | opp_overlap 145485, overlap 145485 TTTAGTTAATAAAAA TGATAATTAAGCCTTAGATTA TTA TGATTTAAGGCTTAATTTTTA TTTATCGATAAATTA TERM 253 145485 - 145517 + F 100 -12.3 -5.38958 | opp_overlap 145485 145479 TAATAAAAATGATAA TTAAGCCTTAGATTA TTA TGATTTAAGGCTTAA TTTTTATTTATCGAT TERM 254 145517 - 145485 - f 76 -7.9 -3.81195 | opp_overlap 145485, overlap 145479 TAATAAAAATGATAA TTAAGCCTTAGATTA TTA TGATTTAAGGCTTAA TTTTTATTTATCGAT TERM 255 145801 - 145758 - f 72 -7.2 -3.74747 | opp_overlap 145759 145765 145784, overlap 145759 145765 TTAAGTTGTATTAAA TTTAAAATTATATAATAATA ATAT TGTTATTATATAATTTTAAT TATCATATAATATTT TERM 256 145759 - 145800 + F 100 -12.9 -3.49516 | opp_overlap 145759 145758 145765, overlap 145765 145784 TAAGTTGTATTAAAT TTAAAATTATATAATAATA ATAT TGTTATTATATAATTTTAA TTATCATATAATATT TERM 257 145800 - 145759 - f 82 -10.7 -2.84527 | opp_overlap 145759 145765 145784, overlap 145758 145765 TAAGTTGTATTAAAT TTAAAATTATATAATAATA ATAT TGTTATTATATAATTTTAA TTATCATATAATATT TERM 258 145765 - 145794 + F 78 -7.5 -4.51777 | opp_overlap 145765 145759 145758, overlap 145759 145784 GTATTAAATTTAAAA TTATATAATAATA ATAT TGTTATTATATAA TTTTAATTATCATAT TERM 259 147125 - 147135 + G 71 -4 -5.1101 | overlap 147123 GGTAATGCAAACTTT GATT TTC AATC TTTTTTAGATGCTCA BDU_1132 145892 - 147817 + | hypothetical protein TERM 260 147844 - 147868 + F 100 -11.5 -5.54192 | opp_overlap 147844 TTTAGATGGTATTAA GCCTCGGATTA GTA TAATCCAAGGC TTTTTTTAAATTAAT TERM 261 147868 - 147844 - f 100 -13.7 -3.17763 | opp_overlap 147844 TTTAGATGGTATTAA GCCTCGGATTA GTA TAATCCAAGGC TTTTTTTAAATTAAT TERM 262 148672 - 148659 - g 71 -3.9 -5.17744 | opp_overlap 148659, overlap 148653 AGAGAGTAATAAAAA TCATT TTCA AATGA CTTTTAATATGGCAT BDU_1133 148033 - 148839 + | putative lipoprotein TERM 263 149374 - 149364 - g 71 -2.4 -5.40474 | opp_overlap 149364 AGTTTGTTAAAAAAA GCAG AGG CAGC TGTTAAAGGTATTAA BDU_1134 148920 - 150593 + | hypothetical protein BDU_1135 150652 - 152304 + | putative lipoprotein TERM 264 152352 - 152381 + F 90 -5.9 -5.56673 | gap 1, opp_overlap 152352 ATCAGAATGATTAAA TAAAGCTTTCAAGG TGT TCTTGAG-GCTTTA TTTTTTATTATACAT TERM 265 152460 - 152439 - f 83 -8.9 -4.00124 | opp_overlap 152420 152439, overlap 152420 TACTTTATAAGTAAA GAGTTTAAT TATT ATTAAACTC TTTTTTAATTAATTG TERM 266 152439 - 152460 + F 100 -8.9 -5.32565 | opp_overlap 152420 152439, overlap 152420 TACTTTATAAGTAAA GAGTTTAAT TATT ATTAAACTC TTTTTTAATTAATTG BDU_1136 152627 - 153262 + | hypothetical protein TERM 267 153286 - 153311 + F 70 -6.3 -4.04174 | gap 1, opp_overlap 153286 TAAATTATTATTTAA CCCTTTCTGATA ATG TGT-AGAAAGGG TTTGATTATATAAAA BDU_1137 153624 - 154880 + | hypothetical protein pncA 154977 - 155591 + | pyrazinamidase/nicotinamidase BDU_1139 155799 - 156671 + | hypothetical protein BDU_1140 156841 - 157122 + | hypothetical protein TERM 268 157223 - 157256 + F 79 -9.1 -3.60792 | opp_overlap 157211 GATTTAATGTTGGAG TGTTGTAAGTCATGT TAAG ATATGATTTACAGCA TTTCAGCATTAAAGG BDU_1141 157405 - 158181 + | hypothetical protein TERM 269 158237 - 158292 + F 80 -8 -4.12421 | gap 1, opp_overlap 158246 ATATATGTTTTGATG TATGTAAAATTGTAGGCTAATAATTCT TAT AGAATTGTT-GCCTACAATGATAAATA TTGATTTTTTTGTTA TERM 270 158283 - 158246 - f 93 -10.9 -4.19817 | gap 1, opp_overlap 158237 TTGATGTATGTAAAA TTGTAGGCTAATAATTCT TAT AGAATTGTT-GCCTACAA TGATAAATATTGATT guaA 158404 - 159945 + | GMP synthase (glutamine-hydrolysing)(glutamine BDU_1143 159975 - 161426 + | Inosine-5'-monophosphate dehydrogenase BDU_1144 161702 - 162667 + | hypothetical protein SEQUENCE gi|203288641|ref|NC_011248.1| Borrelia duttonii Ly plasmid pl35, complete sequence (length 35286) BDU_7001 2078 - 1224 - | antigen P35-like protein vsp 3941 - 3114 - | vsp protein TERM 1 4001 - 3977 - R 90 -5 -5.9873 | opp_overlap 3977 GGATTACAAAAAAAA CATCTCTCCT GACTA ACGAGAGACG TATTTTTCTTACTTA vlp-b 5204 - 4050 - | vlp protein, beta subfamily TERM 2 5337 - 5320 - R 90 -4.8 -5.95539 | opp_overlap 5320 CTGCAAATAAAAAAA GAGAGC TTTATT GCTCCC TTTATCAGCGTTCTT vlp-d_1 6425 - 5397 - | vlp protein, delta subfamily TERM 3 5680 - 5702 + g 74 -6.2 -4.45945 | opp_overlap 5683, overlap 5683 GCATTATCTTTCTTA GAAGCAGCAA TAC TTGCAGCATC TTTTGCTTGGTCAAT TERM 4 6551 - 6532 - R 83 -3.5 -5.95539 | opp_overlap 6532, overlap 6543 CCGCAAATAAAAAAA GAGAGCT AAAATA AGCACTC TTAACTAATTATTTA TERM 5 7037 - 7047 + r 73 -6.8 -4.06864 | overlap 7035 CATATTGATGCACTT GCTG CTG CAGC TTGTTGTTCTGTGAC TERM 6 7699 - 7673 - R 100 -8.8 -5.40279 | CAAAATAAAATAAAA GATACTAAGAAC TTA GCTCCCAGTATC TTCCCGTTATAACTT vlp-c_1 8819 - 7752 - | vlp protein, gamma subfamily TERM 7 8967 - 8950 - R 100 -7 -6.09196 | opp_overlap 8949 8952 CCGAAAATAAAAAAA GAGAGC TTTATT GCTCTC ATTAACTAAGTTTTT vlp-d_2 10056 - 9031 - | vlp protein, delta subfamily TERM 8 10281 - 10264 - R 100 -7 -6.09196 | opp_overlap 10264 CTGAAAATAAAAAAA GAGAGC TTGATT GCTCTC TTCACTAATATTTCT TERM 9 10838 - 10848 + r 74 -6.8 -4.26188 | GTCACATTTAATGCC GCAG TCC CTGC TTTTAACTCTGTAAC TERM 10 11564 - 11547 - R 100 -7 -6.02919 | opp_overlap 11546 11549 CCACAAATAAAAAAA GAGAGC TTGATT GCTCTC ATTAACTAAATTTTT TERM 11 12608 - 12634 + r 76 -8.1 -3.82603 | opp_overlap 12608 CACCATAAAATAAAA GATACAAAGAG CTTAA CTCTTAGTATC TTATCTTTACAACTT TERM 12 12634 - 12608 - R 100 -8.8 -5.20781 | opp_overlap 12608 CACCATAAAATAAAA GATACAAAGAGC TTA ACTCTTAGTATC TTATCTTTACAACTT vlp-c_2 13859 - 12687 - | vlp protein, gamma subfamily TERM 13 13991 - 13974 - R 100 -7 -6.09196 | opp_overlap 13976 CCTAAAATAAAAAAA GAGAGC TTGATT GCTCTC ATTAACCAAGTTTTT vlp-d_3 15059 - 14055 - | vlp protein, delta subfamily TERM 14 16558 - 16546 - R 76 -6.3 -4.67904 | opp_overlap 16546 16555, overlap 16555 CATTAACTCCAAAAA TGCAT AAA ATGCA TTCTCTGCACTTCTC TERM 15 16870 - 16853 - R 100 -4.8 -6.23545 | opp_overlap 16853 TGCAAATAAAAAAAA GAGAGC TTTATT GCTCCC TCTACTATATTTCTG TERM 16 17103 - 17075 - R 90 -7.5 -5.09225 | opp_overlap 17080, overlap 17080 ATCCCATCTAAAAAA CAGAAGCTCTCTT AAT AAGAGAGCTTTTT ATTTCTATAATTTTA TERM 17 17080 - 17098 + r 100 -11.8 -5.42975 | opp_overlap 17080 17075 ATCTAAAAAACAGAA GCTCTCTT AAT AAGAGAGC TTTTTATTTCTATAA TERM 18 17098 - 17080 - R 100 -11.8 -4.19369 | opp_overlap 17080, overlap 17075 ATCTAAAAAACAGAA GCTCTCTT AAT AAGAGAGC TTTTTATTTCTATAA TERM 19 18168 - 18151 - R 90 -4.8 -5.95539 | opp_overlap 18151 CTGCAAATAAAAAAA GAGAGC TTTACT GCTCCC TTTAATAAAATTCTG TERM 20 18774 - 18784 + r 73 -2.4 -5.65513 | ACTACTCCTTGAAGT GCCC TAA GAGC TTTTTTTAATTCCTC TERM 21 19392 - 19382 - R 83 -4 -5.89921 | ATTAGAAGAAAAAAA TATG ACT CATA TAACACATACAATCT BDU_7019 21366 - 21109 - | hypothetical protein BDU_7020 22332 - 21376 - | hypothetical protein TERM 22 23457 - 23440 - R 86 -4.8 -5.64421 | opp_overlap 23440 23452 ACTGCAAATAAAAAA GAGAGC TTCATT GCTCCC TTTGCAGCGTTCTTA vlp-d_4 24604 - 23528 - | vlp protein, delta subfamily TERM 23 24735 - 24718 - R 86 -4.8 -5.64421 | opp_overlap 24718 ACCGCAAATAAAAAA GAGAGC TTCATT GCTCCC TTTGCCAACGTTCTT vlp-d_5 25744 - 24794 - | vlp protein, delta subfamily TERM 24 25387 - 25401 + g 78 -10 -2.64747 | overlap 25389 TAACTGAATTCTTGT CAGCAG CCA CTGCTG CTTGTCCTACACTAG TERM 25 25389 - 25402 + g 73 -8.1 -3.4178 | overlap 25387 ACTGAATTCTTGTCA GCAGC CACT GCTGC TTGTCCTACACTAGT TERM 26 26053 - 26007 - R 72 -9.1 -2.63596 | opp_overlap 26017, overlap 26017 CTTTATTTGACACCA TAAAATAAAAGATACCAAAAG ACTAA CTTTCAGTATCTTTCCTTTTA TCACTCCACTAACTA TERM 27 26043 - 26017 - R 90 -6.7 -5.20781 | opp_overlap 26017, overlap 26007 CACCATAAAATAAAA GATACCAAAAG ACTAA CTTTCAGTATC TTTCCTTTTATCACT vlp-c_3 27036 - 26095 - | vlp protein, gamma subfamily TERM 28 27294 - 27247 - R 100 -14.6 -4.93333 | AATTAAAATATAAAA TTAGATCCTGACTAAATATTCT ACAT AGAACACTTAATCAAGATCTAA AGCTTTGCAAGTATG pf49 28468 - 27851 - | PF49 plasmid partition protein TERM 29 28079 - 28069 - G 70 -5.4 -4.56607 | TTATCAATGATAAAA CTTC TCT GAAG CCGTTTTCCAATACA TERM 30 28437 - 28457 + g 73 -5.5 -4.6951 | opp_overlap 28437, overlap 28439 ATCCTCTTTTGCAAA TGTTTCCAA CGG TTGGAAAAA TTTATTTTCAATAAT pf32 29237 - 28473 - | PF32 plasmid partition protein ppap1 29773 - 29213 - | plasmid partitioning associated protein-1 TERM 31 29660 - 29672 + g 72 -4.9 -4.89233 | ATCTTTCATAATTTT TGTAT GAT ATACA TTTTTACTATTAATC TERM 32 31616 - 31606 - H 73 -4 -5.38398 | ATAAAAATACAAAAA GAAT TAA ATTC TCGATATTCATTATT TERM 33 32173 - 32146 - H 73 -2.2 -5.64328 | gap 1, overlap 32163 AATAAAAAAATAAAA GTCTAA-TAGA ACTGAAA TCTAGTTAGAC TAAAATCCAAAGCTC TERM 34 33846 - 33834 - g 87 -4.9 -5.76237 | CAGAGAAAGAAAAAA TTTTG ATG CAAAA TGCAAAAGGAGAGAC BDU_7030 32234 - 33868 + | hypothetical protein TERM 35 34294 - 34282 - g 75 -3.4 -5.54338 | CAATTAAAAGAAAAA GATC AAAAA GATC AATCTGTAGATCAAG BDU_7031 33865 - 34428 + | hypothetical protein TERM 36 34440 - 34490 + T 74 -5.1 -4.88895 | overlap 34436 34442 TTAACTAGAGATTAA TATGAATTATTGATTTTGCTAAT GAAAG ATTTGTAGAATTAGTAATTCATG TTTATTTGTTTATTT bdr 35099 - 34500 - | bdr protein SEQUENCE gi|203288661|ref|NC_011249.1| Borrelia duttonii Ly plasmid pl36, complete sequence (length 35831) BDU_6001 70 - 510 + | hypothetical protein vlp-d_1 2062 - 1058 - | vlp protein, delta subfamily TERM 1 1599 - 1615 + g 76 -8.7 -3.6284 | ACGAGAGCATTTATA CTTGCAG CTT CTGCAGG TTTAGCATCCTCATT TERM 2 3984 - 3954 - R 88 -5.6 -5.59502 | opp_overlap 3961, overlap 3957 TAAAAAAGCAAAAAA GAATAAATCAAATC AAC GATATGATTTATTG AAATATAATTTATAT TERM 3 3981 - 3957 - R 86 -7.3 -4.78121 | opp_overlap 3961, overlap 3954 AAAAGCAAAAAAGAA TAAATCAAATC AAC GATATGATTTA TTGAAATATAATTTA TERM 4 4404 - 4364 - R 90 -7.1 -5.2204 | opp_overlap 4367, overlap 4367 CATAATTAACAAAAA TAACACTTCTCTCTATTAT AGC ATTATAAAAAGAAGTGTTT ACATTTCATAATTTA TERM 5 4401 - 4367 - R 91 -8.8 -4.67357 | opp_overlap 4367, overlap 4364 AATTAACAAAAATAA CACTTCTCTCTATTAT AGC ATTATAAAAAGAAGTG TTTACATTTCATAAT TERM 6 4733 - 4683 - R 73 -8.4 -3.17075 | gap 1, opp_overlap 4687, overlap 4685 4724 TTGCTTTTAATGCAA CAGCTGCTGCTAAATC-GGCA TTGGTCTTTG CGCCTGAATTAGCAGCAGCAG CATTAGCATTAGAAG TERM 7 4731 - 4685 - R 78 -9.6 -3.14878 | gap 1, opp_overlap 4687, overlap 4683 4724 GCTTTTAATGCAACA GCTGCTGCTAAATC-GGCA TTGGTCTTTG CGCCTGAATTAGCAGCAGC AGCATTAGCATTAGA vlp-d_2 7187 - 6135 - | vlp protein, delta subfamily TERM 8 7267 - 7248 - R 100 -8 -5.66868 | AAGGAAGCAAAAAAA TATGTGTT ATAT AACACATA CAATACCGCAAATAA TERM 9 7307 - 7288 - R 100 -5.7 -5.95539 | opp_overlap 7288, overlap 7299 CCGCAAATAAAAAAA GAGAGCT AAAATA AGCCCTC TTAACTAATTATTTA vlp-a_1 10050 - 8977 - | vlp protein, alpha subfamily TERM 10 9284 - 9300 + g 74 -8.1 -3.65313 | GTCGTATTTTCATCT GCATTAT CTG ATAATGC TTTAGCATGTCCTTC TERM 11 9394 - 9406 + g 70 -7.7 -3.37056 | TTTATCTGAATCTGT TGCAC CTG GTGCA TTATCCGTAGCTAAT TERM 12 10204 - 10187 - R 86 -4.8 -5.64421 | opp_overlap 10187 ATTGCAAATAAAAAA GAGAGC TTCATT GCTCCC TTTTCAGCGTTCTTA vlp-d_3 11294 - 10263 - | vlp protein, delta subfamily vlp-a_2 12673 - 11531 - | vlp protein, alpha subfamily TERM 13 14244 - 14254 + H 86 -4 -6.11229 | opp_overlap 14244 AAACAAACAATATAA TCAT AAA ATGA TTTTTTTATTTTACT TERM 14 14739 - 14714 - g 84 -4.1 -5.75478 | opp_overlap 14720, overlap 14720 AATGATACAAAAAAA CAAAAAGAATT AAGC AATTCCTTTAG TAAAGCATATAATTC TERM 15 14733 - 14720 - g 84 -3.9 -5.89659 | opp_overlap 14720, overlap 14714 ACAAAAAAACAAAAA GAATT AAGC AATTC CTTTAGTAAAGCATA BDU_6012 14444 - 15001 + | ORFk-like protein TERM 16 15603 - 15615 + F 73 -3.5 -5.27335 | overlap 15602 15602 15608 TATAATTTTTTATAT TTTTT TAA AAAAA TTTTTATTTAAAAAA ppap2 15703 - 16773 + | plasmid partitioning associated protein 2 ppap1 16783 - 17343 + | plasmid partitioning associated protein 1 TERM 17 17836 - 17847 + G 73 -3 -5.52079 | opp_overlap 17836, overlap 17829 TTTTTGTGGATAAAT TAGA TATA TCTA TTTTTATTTTCATAT pf32 17319 - 18080 + | PF32 plasmid partition protein pf49 18115 - 18660 + | PF49 plasmid partition protein TERM 18 19031 - 19082 + T 100 -14.2 -5.05228 | opp_overlap 19048 19050 19071, overlap 19032 TCAATTCACAAAGGC TTTAGGTCTTGATTAGATATTCTT AAAT AAGAATATCTAATTAGGGTCTAAG TTTTTGTAATTTGGT TERM 19 19032 - 19081 + T 100 -15.5 -3.6151 | opp_overlap 19048 19050 19071, overlap 19031 CAATTCACAAAGGCT TTAGGTCTTGATTAGATATTCTT AAAT AAGAATATCTAATTAGGGTCTAA GTTTTTGTAATTTGG TERM 20 19113 - 19123 + T 74 -2.6 -5.71712 | opp_overlap 19113 TTTCTGAGCAATATA TAAA CTA TTTA TTTTTTTATATAACA BDU_6017 20348 - 19404 - | hypothetical protein BDU_6018 21449 - 22393 + | hypothetical protein TERM 21 22883 - 22900 + F 74 -2.7 -5.76633 | AGAATTTGAGGCTAT GTAAATG AATA CATTTTC TTTTTTTATCTATAA TERM 22 23132 - 23149 + F 71 -7.1 -3.89787 | opp_overlap 23134, overlap 23129 AATAAAATTGTATAT GACATTA TTTT TAATGTC TATTTATTTAATTAT TERM 23 24147 - 24157 + G 73 -5.4 -4.73633 | GGTGATAAAATCTCT TGCT GAA AGCA TTTTGTGTGTTGTTA BDU_6019 23764 - 24828 + | hypothetical protein TERM 24 24865 - 24889 + T 74 -5.1 -4.74013 | opp_overlap 24865, overlap 24872 AAAAATTAAAAAATG CAAAGTCGT CAATAAT ATGACTTTG TTTTATATATTTAGA TERM 25 25807 - 25791 - T 76 -6.7 -4.54608 | opp_overlap 25793, overlap 25797 TAAAATAAATATAAA TATCAAT ATT ATTGATA TAATAAAATCTTTTT bdr 26848 - 26192 - | bdr protein vsp_1 27404 - 27886 + | vsp protein TERM 26 27954 - 27979 + F 77 -4.7 -5.20781 | opp_overlap 27956 GTTAATAGAGATAAA GATACTGGGAG TAAT CTCTTGGTGTC TTTTATTTTATAGTG TERM 27 29020 - 29008 - g 70 -6.3 -4.20883 | TAAAAAGGCTGAAAA TCTTG CTG CAAGA ACTAATGGGGATGGT vlp-c 28466 - 29443 + | vlp protein, gamma subfamily TERM 28 29475 - 29501 + F 100 -10.2 -5.22137 | opp_overlap 29475 AAGTCATAAAGTGAA GATACTGAGAGC GAA GCTCTTTGTATC TTTTATTTTATAGTT TERM 29 29501 - 29475 - f 72 -8 -3.34113 | opp_overlap 29475 AAGTCATAAAGTGAA GATACTGAGAGC GAA GCTCTTTGTATC TTTTATTTTATAGTT vlp-a_3 29981 - 31126 + | vlp protein, alpha subfamily TERM 30 31178 - 31195 + F 100 -7 -5.95539 | opp_overlap 31178 AAAAGTATTAGTGAA GAGAGC AATCAA GCTCTC TTTTTTTATTTGCAG TERM 31 32364 - 32382 + F 83 -3.8 -5.95539 | opp_overlap 32364 TAGAAATATTGTAAA GGGAGC CAATAAA GCTCTC TTTTTTTATTTGCAG TERM 32 33425 - 33442 + G 100 -7 -5.64421 | opp_overlap 33424 33427 AAAAACTTAGTTAAT GAGAGC AATAGA GCTCTC TTTTTTATTTGCGGT vsp_2 33423 - 34094 + | vsp protein TERM 33 34179 - 34200 + F 100 -6.6 -6.04324 | opp_overlap 34179 GTCAATAAAAGAGAG CTAGGAGC ATATAA GCTCTTAG TTTTTTATTTTTTGA TERM 34 34515 - 34551 + F 100 -13.3 -4.5477 | opp_overlap 34507 34515 AGGTAAAGTTATAAA GAGAAGATACTAAGA GTGAAGA TCTTGGTATCTTCTC TTTTATAGTGTGTTA TERM 35 34551 - 34515 - f 95 -11.1 -4.02534 | opp_overlap 34515, overlap 34507 AGGTAAAGTTATAAA GAGAAGATACTAAGA GTGAAGA TCTTGGTATCTTCTC TTTTATAGTGTGTTA BDU_6026 35296 - 35831 + | hypothetical protein SEQUENCE gi|203288682|ref|NC_011250.1| Borrelia duttonii Ly plasmid pl40, complete sequence (length 40353) vlp-a_1 3899 - 2769 - | vlp protein, alpha subfamily TERM 1 3982 - 3965 - R 100 -7 -5.95539 | opp_overlap 3964 3967 CCGCAAATAAAAAAA GAGAGC TATTTT GCTCTC ATTAACTAAGTTTTT TERM 2 4659 - 4675 + r 72 -8 -3.3903 | ATAACATCATTACCT GCAGCT CATTT AGCTGC TTCCTTGGCTCCTTC TERM 3 5201 - 5181 - R 95 -6.9 -5.40014 | opp_overlap 5181 AAATAACAACAAAAA CTAAGAACA CTA TGCTCCTAG TTTGTTTTTTCTTAA vlp-a_2 6848 - 5757 - | vlp protein, alpha subfamily TERM 4 6256 - 6266 + g 74 -6.8 -4.26188 | GTCACATTTAATGCC GCAG TCC CTGC TTTTAACTCTGTAAC TERM 5 6981 - 6964 - R 81 -2.7 -6.02919 | CCACAAATAAAAAAA GAGAG CTTGATTT CTCTC ATTAACTAAATTTTT TERM 6 8020 - 8046 + r 76 -8.1 -3.82603 | opp_overlap 8020 CACCATAAAATAAAA GATACAAAGAG CTTAA CTCTTAGTATC TTATCTTTACAACTT TERM 7 8046 - 8020 - R 100 -8.8 -5.20781 | opp_overlap 8020 CACCATAAAATAAAA GATACAAAGAGC TTA ACTCTTAGTATC TTATCTTTACAACTT vlp-c_1 9211 - 8099 - | vlp protein, gamma subfamily TERM 8 9395 - 9378 - R 100 -7 -6.09196 | opp_overlap 9380 CCTAAAATAAAAAAA GAGAGC TTGATT GCTCTC ATTAACCAAGTTTTT vlp-a_3 11911 - 10823 - | vlp protein, alpha subfamily TERM 9 11738 - 11726 - G 77 -6.3 -4.67904 | opp_overlap 11726 11735, overlap 11735 CATTAACTCCAAAAA TGCAT AAA ATGCA TTCTCTGCACTTCTC TERM 10 12110 - 12093 - R 86 -4.8 -5.64421 | opp_overlap 12093 ACTGCAAATAAAAAA GAGAGC TTCATT GCTCCC TTTGCCAAAATTTTT bdr_1 12811 - 12350 - | bdr protein TERM 11 13884 - 13906 + H 71 -7.1 -3.94812 | opp_overlap 13882, overlap 13882 TAATATAAAATTATT GGTATCTTT CCTAT AAAGATGCC TATTTTTAAGTAAAG TERM 12 15043 - 15033 - H 78 -2.6 -5.94597 | overlap 15024 GAATACTAAAAAAAA TTTT CAA AAAA CAATAAAAGAATATT BDU_5017 15326 - 17083 + | hypothetical protein TERM 13 17278 - 17252 - T 87 -9.6 -4.06502 | opp_overlap 17260 TATTTGTAAATCAAA GGAATAAGTATC TTG GATATTTATTCC AAAAACATTTAAAAC ssb 20087 - 19626 - | single-stranded DNA-binding protein TERM 14 19893 - 19866 - G 86 -9.4 -3.74693 | opp_overlap 19866 19869, overlap 19869 TGCTAGTTTACCAAA TAATACACAATT AAAA AATTGTGCATTA TCTCTCCACTCACCT TERM 15 19890 - 19869 - G 70 -6.7 -4.00756 | opp_overlap 19866 19869, overlap 19866 TAGTTTACCAAATAA TACACAATT AAAA AATTGTGCA TTATCTCTCCACTCA TERM 16 21711 - 21725 + G 86 -4.4 -5.75342 | overlap 21724 TTTGTCAACTTTTTG TTATAA TAT TTATAA TTTTTTTTACAAAAA ppap2 21697 - 22941 + | plasmid partitioning associated protein 2 TERM 17 23033 - 23014 - g 73 -8 -3.39867 | overlap 23013 GAAAAAGAAAATAAG TCTATCTT TGTA AAGATAGA AAATAAAAATGACAG ppap1 22951 - 23511 + | plasmid partitioning associated protein-1 pf32 23487 - 24269 + | PF32 plasmid partition protein TERM 18 24289 - 24270 - f 72 -7.2 -3.80279 | GTTACAAATATATAA TTATGCGT TGTA ACGCACAA CTTAAAAGGAGGTAT pf49 24306 - 24923 + | PF49 plasmid partition protein TERM 19 25186 - 25237 + T 100 -9 -5.46706 | TCATTCGAATAAGCC TTTAGGCCTTTGTTAAGCATTTTG AAAG CAGAGTGTTTAATTAGGGTCTAAA TTTTTATTTTCAAAT TERM 20 25629 - 25644 + T 74 -6.2 -4.52703 | opp_overlap 25629 TGGTAATTTAGTAGA TGTTGT TACA ACAACA TTTTATAGTCCTTTA BDU_5029 27364 - 26783 - | family 113-like protein, lipoprotein TERM 21 27534 - 27552 + H 74 -7.6 -4.00512 | opp_overlap 27531, overlap 27531 27532 TTTCAAAATAACCTT TTAAACTT TGA AAGTTTAA TGTTTTGTTATAAAG bdr_2 29099 - 29656 + | bdr protein TERM 22 29947 - 29964 + F 86 -4.8 -5.64421 | opp_overlap 29947 AAAAATTTTGGCAAA GGGAGC AATGAA GCTCTC TTTTTTATTTGCGGT vlp-d 30037 - 31173 + | vlp protein, delta subfamily TERM 23 31239 - 31256 + F 90 -4.8 -5.95539 | opp_overlap 31239 TATTGATAAAGGAAA GGGAGC AAAAGA GCTCTC TTTTTTTATTTGCAG vlp-c_2 31376 - 32389 + | vlp protein, gamma subfamily TERM 24 32448 - 32472 + F 82 -6.5 -5.09225 | opp_overlap 32448 AAATTATAAAAAAAA GATGCTTTCTT GCT AAAAGAGCATC TTTTTTAGATAAGAT TERM 25 32472 - 32448 - f 100 -6.5 -6.04378 | opp_overlap 32448 AAATTATAAAAAAAA GATGCTTTCTT GCT AAAAGAGCATC TTTTTTAGATAAGAT vsp_1 32738 - 33331 + | vsp protein TERM 26 34441 - 34431 - f 88 -5.4 -5.54192 | overlap 34432 34434 34435 ACTAATGCAAAAAAA TCAG CAG CTGA TGCAGCTAAAGCAGT TERM 27 34872 - 34898 + F 93 -7.4 -5.20781 | opp_overlap 34872 AAGTCATAAAGTGAA GATACTAAGAGT GAA GCTTTTGGTATC TTTTATTTTATAGTG TERM 28 35726 - 35759 + F 100 -6.3 -6.17268 | gap 1, opp_overlap 35722 35732, overlap 35732 35750 AATAAAATCAATAGC TATAAAGCTAAGAGTG TAG TATTCTTAGCTTT-TA TTTTTTTTCTTGTAA TERM 29 35732 - 35754 + F 100 -7.8 -5.69976 | opp_overlap 35722 35732, overlap 35726 35750 ATCAATAGCTATAAA GCTAAGAGTG TAG TATTCTTAGC TTTTATTTTTTTTCT vsp_2 36212 - 36892 + | vsp protein TERM 30 36987 - 37007 + F 100 -9.1 -5.64321 | opp_overlap 36987 36986 TTAATAAATATAAAG CTGAGAGTA TAG TACTCTTAG TTTTTGTTTTGTTAT TERM 31 37949 - 37966 + F 100 -7 -5.95539 | opp_overlap 37949 37951 AAAAAGGCTAGTAGA GAGAGC AATAAA GCTCTC TTTTTTTATTTGCAG vlp-a_4 38133 - 39182 + | vlp protein, alpha subfamily SEQUENCE gi|203288701|ref|NC_011251.1| Borrelia duttonii Ly plasmid pl41, complete sequence (length 41259) BDU_4001 808 - 1 - | antigen P35-like protein TERM 1 996 - 980 - R 79 -5.9 -5.00616 | opp_overlap 967 980, overlap 961 TTTCTCTTTAAAAAA GAGATAT AGT ACATCTC ATTTGTTTTTTTAAT vlp-d_1 3430 - 2399 - | vlp protein, delta subfamily TERM 2 2706 - 2722 + g 71 -8 -3.21258 | opp_overlap 2697 GCAATAGCAATTTCT GCAGCA TCCTT TGCTGC TTCAATTCCATTAGT TERM 3 3590 - 3573 - R 86 -4.8 -5.64421 | opp_overlap 3573 ACTGTAAATAAAAAA GAGAGC TTCATT GCTCCC TTTGCCAACGTTCTT vlp-d_2 4642 - 3650 - | vlp protein, delta subfamily TERM 4 4855 - 4838 - R 100 -7 -5.64421 | opp_overlap 4838 4840 ACTGCAAATAAAAAA GAGAGC TTTATT GCTCTC TCTACTAGCCTTTTT TERM 5 4908 - 4877 - R 100 -14.8 -3.05463 | opp_overlap 4879, overlap 4879 AGCCTTTTTATCTAA TAGTTAGTACATAT ATTT ATATGTACTAACTA ATTCAAATACTAATT TERM 6 4906 - 4879 - R 100 -13 -3.08679 | opp_overlap 4879, overlap 4877 CCTTTTTATCTAATA GTTAGTACATAT ATTT ATATGTACTAAC TAATTCAAATACTAA TERM 7 4879 - 4906 + r 95 -13 -2.74012 | opp_overlap 4879 4877 CCTTTTTATCTAATA GTTAGTACATAT ATTT ATATGTACTAAC TAATTCAAATACTAA vlp-d_3 5961 - 4918 - | vlp protein, delta subfamily TERM 8 6098 - 6081 - R 100 -7 -5.95539 | opp_overlap 6080 6083 CCGCAAATAAAAAAA GAGAGC TTGATT GCTCTC ATTAACTAAGTTTTT TERM 9 7383 - 7348 - R 100 -10.1 -5.88565 | opp_overlap 7354 CTCAGAAGAAAAAAA TACGTGTTATATAAA ATATAA TTTATATAACACATA CAATACCATAAATAA TERM 10 7424 - 7405 - R 100 -5.7 -6.28967 | opp_overlap 7405 CATAAATAAAAAAAA GAGAGCT AAAACA AGCCCTC TTAACTAATTATTCT vlp_1 10002 - 8752 - | vlp protein TERM 11 9409 - 9431 + g 70 -8.6 -2.6428 | opp_overlap 9413, overlap 9408 9413 GTTAATAAGAGTTTG TAAAGAAGTA ATA TGCTTCTTTA ATTCATTAAGTGTTT bdr_1 10742 - 10260 - | bdr protein BDU_4010 12664 - 12113 - | family 115-like protein TERM 12 12747 - 12729 - H 74 -7.6 -4.00512 | overlap 12727 CTTTATAACAAAACA TTAAACTT TCC AAGTTTAA AAGGTTATTTTGAAA BDU_4011 12915 - 13481 + | family 113-like protein, lipoprotein TERM 13 13683 - 13653 - T 90 -7 -5.24989 | opp_overlap 13663, overlap 13655 GCATATAGTAAAAAA TAGGAATAAGTATC TTA GATATTTATTCCAA AAATATTTCAAACTA TERM 14 13681 - 13655 - T 89 -9.6 -4.24891 | opp_overlap 13663, overlap 13653 ATATAGTAAAAAATA GGAATAAGTATC TTA GATATTTATTCC AAAAATATTTCAAAC TERM 15 15002 - 14989 - T 74 -2.5 -5.64274 | opp_overlap 14989 CCATTTACAAAAAAA TAAAT TTTG ATTTA CTATATTTGATGGCA TERM 16 15071 - 15022 - T 95 -10.3 -4.62336 | opp_overlap 15041, overlap 15023 15041 ATTTGATGGCAAAAA CTTAGGCCTTGATTAAAAATTCT TACA AGAATGCTTAATCCAAGCCTAAA GACTTACAAGCACGA TERM 17 15070 - 15023 - T 90 -11.6 -3.3692 | opp_overlap 15041, overlap 15022 15041 TTTGATGGCAAAAAC TTAGGCCTTGATTAAAAATTCT TACA AGAATGCTTAATCCAAGCCTAA AGACTTACAAGCACG pf49 15748 - 15167 - | PF49 plasmid partition protein pf32 16575 - 15817 - | PF32 plasmid partition protein ppap1 17111 - 16551 - | plasmid partitioning associated protein-1 TERM 18 17029 - 17048 + g 74 -6.6 -4.38876 | overlap 17039 CTGTCGTTTTTATTT TCTATTTT GACA AAAATAGA TTTATCTCTTTTTGC ppap2 18269 - 17121 - | plasmid partionning associated protein 2 TERM 19 20117 - 20143 + r 89 -10.4 -3.72576 | opp_overlap 20117 20120, overlap 20120 AGGTGAGTGGAGAGA TAATGCACAATT TTT AATTGTGTATTA TTTGGTAGGCGAGCA TERM 20 20120 - 20140 + r 74 -7.7 -4.00042 | opp_overlap 20117 20120, overlap 20117 TGAGTGGAGAGATAA TGCACAATT TTT AATTGTGTA TTATTTGGTAGGCGA BDU_4020 20920 - 20486 - | MlpL-like protein BDU_4021 21860 - 21162 - | ORFk-like protein BDU_4022 22013 - 22552 + | family 115-like protein TERM 21 22724 - 22711 - f 70 -5.3 -4.67552 | opp_overlap 22711, overlap 22708 TTGACTAAAAAACAA CGTAA AGTG TTACG TGATATTGAAAAGAA bdr_2 23804 - 24205 + | bdr protein TERM 22 24585 - 24602 + F 90 -4.8 -5.95539 | opp_overlap 24585 AAAAGTATTAGTAAA GGGAGC AATAAA GCTCTC TTTTTTTATTTGCAG vsp 24817 - 25425 + | vsp protein vlp-c_1 25946 - 27070 + | vlp protein, gamma subfamily TERM 23 27131 - 27157 + T 93 -7.4 -5.23292 | AAGTTGTAAGGGAGA GATACTGAGAGT TAA GCTTTTAGTATC TTTTATTTTATATAG TERM 24 28153 - 28186 + T 77 -7.6 -4.25754 | opp_overlap 28155 28163, overlap 28148 28155 28156 ACTTTGATTATTATA TAGTTAGCAACTAC AAAATC GTAGTTGCTAAATG TTTACTTATTTTTGA TERM 25 28184 - 28155 - T 71 -8.7 -2.96216 | opp_overlap 28153 28148 28155 28156, overlap 28163 TTTGATTATTATATA GTTAGCAACTACA AAAT CGTAGTTGCTAAA TGTTTACTTATTTTT TERM 26 28155 - 28184 + T 76 -8 -3.70003 | opp_overlap 28155 28163, overlap 28153 28148 28156 TTTGATTATTATATA GTTAGCAACTAC AAAATC GTAGTTGCTAAA TGTTTACTTATTTTT TERM 27 28156 - 28183 + T 87 -11.5 -2.79562 | opp_overlap 28155 28163, overlap 28155 28153 28148 TTGATTATTATATAG TTAGCAACTAC AAAATC GTAGTTGCTAA ATGTTTACTTATTTT BDU_4028 28920 - 28228 - | ORFk-like protein, lipoprotein BDU_4029 29075 - 29614 + | family 115-like protein TERM 28 29786 - 29773 - f 70 -5.3 -4.67552 | opp_overlap 29773, overlap 29770 TTGACTAAAAAACAA CGTAA AGTG TTACG TGATATTGAAAAGAA bdr_3 30827 - 31387 + | bdr protein TERM 29 31766 - 31783 + F 93 -4.8 -6.02919 | opp_overlap 31766 AAAAGTATTAGTAAA GGGAGC AATAAA GCTCTC TTTTTTTATTTGTGG TERM 30 32715 - 32701 - g 73 -8.6 -3.01791 | overlap 32703 ATGCTGTTGCTAATA TAGCTG CTG CAGCTA ATGCTAAAGATGCAA vlp-c_2 31887 - 32993 + | vlp protein, gamma subfamily TERM 31 33052 - 33078 + F 100 -9.6 -6.41881 | opp_overlap 33054, overlap 33049 AAATTATAACGGTAA GATACTAAGATT TAG ATTCTTAGTATC TTTTTTTTTATTATG vlp-d_4 33180 - 34208 + | vlp protein, delta subfamily TERM 32 34267 - 34284 + F 100 -4.8 -6.23545 | opp_overlap 34267 TAGAAATATAGTAGA GGGAGC AATAAA GCTCTC TTTTTTTTATTTGCA vlp-b 34393 - 35451 + | vlp protein, beta subfamily TERM 33 35598 - 35612 + F 72 -7.2 -3.77553 | ATTATAAGTTGGGGC TTGCTT AAT AAGCAA TTATTACTAATCTTA vlp-d_5 35788 - 36756 + | vlp protein, delta subfamily TERM 34 36954 - 36938 - f 88 -5.8 -5.31275 | overlap 36940 GGTGATGATAAAAAA GCCGCA GCTGA TGCAGC AAAAGCAGTTGGTGC TERM 35 38196 - 38186 - g 70 -6.8 -4.05446 | overlap 38187 TTTGGTAATGATAAA GCTG GTG CAGC TGCTGCTAATGCAAA vlp_2 37619 - 38596 + | vlp protein TERM 36 38674 - 38688 + F 80 -5 -5.42605 | TTTTTTCTTGGTTTA GGAAAG TTG TTTTCC TTTTATTTTTATTAA TERM 37 39521 - 39495 - f 100 -8.2 -5.85011 | opp_overlap 39500 GAAAAATTAAAAAAA CAAAAGAGATAT ACT ATATTTCTTTTG TTAAAGAGGAAATGG BDU_4037 39690 - 40541 + | antigen P35-like protein TERM 38 40571 - 40600 + T 72 -7.3 -3.69481 | overlap 40569 40567 40575 CATTTAAAATACAAA GGAAGGTAGATTA ATAA TAGTCTATCTTTC TATATTTTTGTTGTA BDU_4038 41096 - 40752 - | family 88-like protein TERM 39 41039 - 41049 + g 80 -4 -5.66989 | opp_overlap 41039 TACTATTGTTAAATA TGAT TTT ATCA TTTTTTTGATGTTTG TERM 40 41066 - 41078 + g 79 -3.5 -5.67967 | TTTTTTGATGTTTGA TTTTT TTA AAAAA TTTTTTTATACTAAT SEQUENCE gi|203288730|ref|NC_011254.1| Borrelia duttonii Ly plasmid pl42, complete sequence (length 42153) vlp-d_1 1884 - 832 - | vlp protein, delta subfamily TERM 1 2023 - 2004 - R 100 -5.7 -5.95539 | opp_overlap 2004, overlap 2015 CTGCAAATAAAAAAA GAGAGCT AAAATA AGCCCTC TTAACTAATTATTTA TERM 2 3358 - 3394 + r 74 -6.8 -4.2928 | opp_overlap 3358 TAGTACACTACAAAA TTAAAGATACCAAGAA CTTAA TTCCTAGTATCTTTAA TTTATAATTTTTCTC TERM 3 3394 - 3358 - R 100 -11.9 -4.52047 | opp_overlap 3358 TAGTACACTACAAAA TTAAAGATACCAAGAAC TTA ATTCCTAGTATCTTTAA TTTATAATTTTTCTC vlp-c_1 4458 - 3439 - | vlp protein, gamma subfamily TERM 4 4554 - 4536 - R 83 -3.8 -5.95539 | opp_overlap 4536 CTGCAAATAAAAAAA GAGAGC TTTATTG GCTCCC TTTACAATATCTCTA TERM 5 5555 - 5517 - R 75 -3.3 -5.57729 | AAAGAATACAAAAAA GAAAGACATCTCTCC TGACTAAGT AGAAACATGTCTTTC TGACTTAAATAACCT vlp-b 6682 - 5597 - | vlp protein, beta subfamily TERM 6 5878 - 5859 - G 71 -7.9 -3.5774 | opp_overlap 5856 5859 ACCGAAGCCGCTAAA TCCGCAT TGGTAG ATGCGGA TCCGTTGTCATTAGC TERM 7 5859 - 5878 + g 70 -8.6 -2.63347 | opp_overlap 5859, overlap 5856 ACCGAAGCCGCTAAA TCCGCATT GGTA GATGCGGA TCCGTTGTCATTAGC TERM 8 6827 - 6810 - R 100 -7 -5.95539 | opp_overlap 6809 6812 CCGCAAATAAAAAAA GAGAGC TCTCTT GCTCTC ATTAACTAAGTTTCA TERM 9 7439 - 7460 + r 72 -8.9 -2.53759 | opp_overlap 7432 TAGATCAATTTTTTA TTTTTGCTA AAAA TAGCAAAAA TAAATTAAACCTATT bsr 9063 - 8071 - | bsr protein TERM 10 9270 - 9283 + r 70 -5.3 -4.67552 | opp_overlap 9270, overlap 9268 TTCTTTTCAATATCA CGTAA CACT TTACG TTGTTTTTTAGTCAA BDU_3009 9981 - 9442 - | family 115-like protein BDU_3010 10134 - 10832 + | ORFk-like protein TERM 11 11524 - 11504 - T 74 -5.5 -4.86861 | overlap 11500 11505 GAAGAAATAAACAAA TTGTTAACT TGA AGTTAACAC AGAAGGATAAGTTAA TERM 12 11523 - 11505 - T 79 -9 -3.49677 | overlap 11500 11504 AAGAAATAAACAAAT TGTTAACT TGA AGTTAACA CAGAAGGATAAGTTA TERM 13 11795 - 11763 - T 100 -9.5 -4.81814 | opp_overlap 11763 11767, overlap 11767 ATTACTATAATAAAA TAAACAAAAAGAA TAGTAAC TTCTTTTTGTTTA TTTATTGCCAATTCT TERM 14 11763 - 11795 + T 87 -9.5 -4.18702 | opp_overlap 11763 11767, overlap 11767 ATTACTATAATAAAA TAAACAAAAAGAA TAGTAAC TTCTTTTTGTTTA TTTATTGCCAATTCT TERM 15 11791 - 11767 - T 79 -5.9 -4.92812 | opp_overlap 11763 11767, overlap 11763 CTATAATAAAATAAA CAAAAAGAA TAGTAAC TTCTTTTTG TTTATTTATTGCCAA TERM 16 11767 - 11791 + T 73 -5.9 -4.67607 | opp_overlap 11767 11763, overlap 11763 CTATAATAAAATAAA CAAAAAGAA TAGTAAC TTCTTTTTG TTTATTTATTGCCAA bppB_1 12380 - 11964 - | BppB TERM 17 12669 - 12696 + r 87 -11.6 -2.89683 | opp_overlap 12669 12672, overlap 12672 TGCTCGCTTACCAAA TAATACACAATT AAAA AATTGTGTATTA TCTCTCCACTCACCT TERM 18 12696 - 12669 - R 95 -11.6 -3.72576 | opp_overlap 12669 12672, overlap 12672 TGCTCGCTTACCAAA TAATACACAATT AAAA AATTGTGTATTA TCTCTCCACTCACCT TERM 19 12672 - 12693 + r 79 -8.9 -3.59698 | opp_overlap 12669 12672, overlap 12669 TCGCTTACCAAATAA TACACAATT AAAA AATTGTGTA TTATCTCTCCACTCA TERM 20 12693 - 12672 - R 83 -8.9 -4.00042 | opp_overlap 12672 12669, overlap 12669 TCGCTTACCAAATAA TACACAATT AAAA AATTGTGTA TTATCTCTCCACTCA TERM 21 15607 - 15551 - R 100 -13.5 -4.26881 | opp_overlap 15554, overlap 15553 15598 CTTCACAAAATTAAA CATTTAGAGCCTAATTAAATATCCT AACTCAA AGAACATTTAATTAAGCTCTAAAAG CTACATGAAATGATC TERM 22 15605 - 15553 - R 100 -14.7 -3.7278 | opp_overlap 15554, overlap 15551 15598 TCACAAAATTAAACA TTTAGAGCCTAATTAAATATCCT AACTCAA AGAACATTTAATTAAGCTCTAAA AGCTACATGAAATGA pf49 16309 - 15749 - | PF49 plasmid partition protein TERM 23 16285 - 16337 + g 100 -19.7 -3.62224 | opp_overlap 16293 16301 16305, overlap 16287 16290 16293 16304 CCATAAATACTCCTT TGTAATAACGTACAAATAAATACAC CCG GTGTACTTATTTGTACGTTATTATG TTATTCAAAGCATCT TERM 24 16287 - 16335 + g 100 -22.3 -3.38991 | opp_overlap 16293 16301 16305, overlap 16285 16290 16293 16304 ATAAATACTCCTTTG TAATAACGTACAAATAAATACAC CCG GTGTACTTATTTGTACGTTATTA TGTTATTCAAAGCAT TERM 25 16290 - 16332 + g 100 -19.6 -3.83318 | opp_overlap 16293 16301 16305, overlap 16287 16285 16293 16304 AATACTCCTTTGTAA TAACGTACAAATAAATACAC CCG GTGTACTTATTTGTACGTTA TTATGTTATTCAAAG TERM 26 16293 - 16329 + g 100 -16.9 -4.03767 | opp_overlap 16293 16301 16305, overlap 16290 16287 16285 16304 ACTCCTTTGTAATAA CGTACAAATAAATACAC CCG GTGTACTTATTTGTACG TTATTATGTTATTCA TERM 27 16329 - 16293 - G 100 -19.1 -3.61517 | opp_overlap 16293 16290 16287 16285 16304, overlap 16301 16305 ACTCCTTTGTAATAA CGTACAAATAAATACAC CCG GTGTACTTATTTGTACG TTATTATGTTATTCA TERM 28 16321 - 16301 - G 75 -7.7 -4.02253 | opp_overlap 16293 16290 16287 16285 16304, overlap 16293 16305 GTAATAACGTACAAA TAAATACAC CCG GTGTACTTA TTTGTACGTTATTAT TERM 29 16317 - 16305 - G 74 -6.3 -4.59089 | opp_overlap 16304 16293 16290 16287 16285, overlap 16301 16293 TAACGTACAAATAAA TACAC CCG GTGTA CTTATTTGTACGTTA pf32 17083 - 16319 - | PF32 plasmid partition protein ppap1 17619 - 17059 - | plasmid partitioning associated protein-1 ppap2 18699 - 17629 - | ORFe-like protein, plasmid partitioning associated protein-2 bppB_2 20326 - 20742 + | BppB TERM 30 20884 - 20928 + T 86 -10.5 -3.44527 | opp_overlap 20886 20890 20894, overlap 20886 20890 20894 GATTTTAGAATTGCA AATAAATAAACAAAAAGAA GTTACTA TTCTTTTTGTTTATTTATA TTATAGTAATACATG TERM 31 20926 - 20886 - T 100 -13.1 -3.69354 | opp_overlap 20886 20884 20890 20894, overlap 20890 20894 TTTTAGAATTGCAAA TAAATAAACAAAAAGAA GTTACTA TTCTTTTTGTTTATTTA TATTATAGTAATACA TERM 32 20886 - 20926 + T 100 -13.1 -3.29273 | opp_overlap 20886 20890 20894, overlap 20884 20890 20894 TTTTAGAATTGCAAA TAAATAAACAAAAAGAA GTTACTA TTCTTTTTGTTTATTTA TATTATAGTAATACA TERM 33 20922 - 20890 - T 89 -9.5 -4.46835 | opp_overlap 20890 20886 20884 20894, overlap 20886 20894 AGAATTGCAAATAAA TAAACAAAAAGAA GTTACTA TTCTTTTTGTTTA TTTATATTATAGTAA TERM 34 20890 - 20922 + T 89 -9.5 -4.29304 | opp_overlap 20886 20890 20894, overlap 20886 20884 20894 AGAATTGCAAATAAA TAAACAAAAAGAA GTTACTA TTCTTTTTGTTTA TTTATATTATAGTAA TERM 35 20894 - 20918 + T 73 -5.9 -4.70921 | opp_overlap 20894 20890 20886, overlap 20890 20886 20884 TTGCAAATAAATAAA CAAAAAGAA GTTACTA TTCTTTTTG TTTATTTATATTATA TERM 36 20918 - 20894 - T 77 -5.9 -4.78326 | opp_overlap 20890 20886 20884 20894, overlap 20890 20886 TTGCAAATAAATAAA CAAAAAGAA GTTACTA TTCTTTTTG TTTATTTATATTATA TERM 37 21859 - 21872 + T 86 -6.7 -4.97383 | opp_overlap 21861 TCATCTATTTGCAAT GAGAG ATAT CTCTC TTCTTTTTTTTAACT TERM 38 21898 - 21916 + T 100 -9 -5.10516 | overlap 21910 TAACTTATCTTTCTC TGTTAACT TCA AGTTAACA TTTTGTTTACTTTTT TERM 39 21910 - 21926 + T 70 -3.7 -5.19819 | overlap 21898 CTCTGTTAACTTCAA GTTAACA TTT TGTTTAC TTTTTCCTTTTATTT TERM 40 22010 - 22022 + T 74 -4.9 -4.95618 | overlap 22004 TTAAATCTTGTTTTT TAAAC TTT GTTTA TTTCTTTTTGATCTT TERM 41 22360 - 22389 + T 86 -8 -4.72729 | opp_overlap 22368, overlap 22361 TTTGATTATTATTTG ATTAGCAACTAC GATTTA GTAGTTGCTAAA TTTTGATTTTACTTG TERM 42 22361 - 22388 + T 90 -11.5 -3.4201 | opp_overlap 22368, overlap 22360 TTGATTATTATTTGA TTAGCAACTAC GATTTA GTAGTTGCTAA ATTTTGATTTTACTT BDU_3023 23140 - 22433 - | ORFk-like protein, lipoprotein TERM 43 23113 - 23124 + g 73 -3 -5.42605 | opp_overlap 23113 ATAATGTGATATAAA GTAT TAAC ATAC TTTTATTTTTATTCA bdr 24576 - 25178 + | bdr protein TERM 44 25259 - 25283 + F 72 -7.4 -3.69482 | opp_overlap 25259, overlap 25242 25263 25272 TTTTTTTAACAAAAA TAAATAATTG ATCTA CAATTATTTA TTGTATATTCAATAA TERM 45 25283 - 25259 - f 90 -7.4 -5.06414 | opp_overlap 25242 25259 25263 25272 TTTTTTTAACAAAAA TAAATAATTG ATCTA CAATTATTTA TTGTATATTCAATAA TERM 46 25861 - 25886 + F 85 -8.4 -4.4572 | opp_overlap 25865 25873, overlap 25865 AGATAAGAACGCTGA TAAAGGGAGC AATAAA GCTCTCTTTA TTTATTTGCGGTATT TERM 47 25865 - 25882 + F 71 -4.8 -4.78326 | opp_overlap 25865 25873, overlap 25861 AAGAACGCTGATAAA GGGAGC AATAAA GCTCTC TTTATTTATTTGCGG TERM 48 26676 - 26655 - g 80 -8.7 -3.94409 | overlap 26658 26668 GATATTAGCTACAAA TGATGCTGG CAAA CCAGCAGCA GGGGATACAGGTAAA TERM 49 26673 - 26658 - g 76 -9 -3.03012 | overlap 26655 26668 ATTAGCTACAAATGA TGCTGG CAAA CCAGCA GCAGGGGATACAGGT vlp-a 25987 - 27081 + | vlp protein, alpha subfamily TERM 50 27128 - 27162 + F 85 -5.2 -5.4505 | gap 1 TTGGGAATAAGATTA GAAGGTAAGCTTAGA GATTTA TCTAGGTTT-CCTTC TTTTTTGTTGGAAGG TERM 51 27367 - 27379 + F 76 -6.3 -4.67904 | opp_overlap 27367 GAGAAGTGCGGAGAA TGCAT TTT ATGCA TTTTTGGAGTTAGTG TERM 52 28337 - 28354 + F 90 -4.8 -5.95539 | opp_overlap 28337 AAGAATGTTGGTAAA GGGAGC AATGAA GCTCTC TTTTTTTATTTGCAG TERM 53 28646 - 28676 + G 84 -9.2 -3.97209 | ATTTTTGGAGGTTTT TGTATCTTTTGGAA ATA TACTAAAAGATACA TTTGGTCTTACTTCA vlp 28479 - 29516 + | vlp protein TERM 54 29567 - 29599 + F 77 -7.2 -4.37211 | opp_overlap 29570 TTTTTTAAGTTTTGA TAAGCATAAATATC CGTAA GGTATTTTTGCTTA TTTATTGTAGATTTA TERM 55 30750 - 30740 - f 77 -5.4 -5.01732 | overlap 30743 AATTCTCCTAAAAAA TCAG CAG CTGA TGCGGCAAAAGCAGT TERM 56 31537 - 31511 - f 81 -5.2 -5.20781 | CATCATAAAACAAAA GACACTGAAAAC TTA ACTCTCAGTATC TTCCTTTATAACTTT TERM 57 31694 - 31713 + F 100 -5 -6.55664 | opp_overlap 31696 GTAAAAAGGCTAGTA GAGAGC GCAATAAA GCTCTC TTTTTTTTTATTTTC TERM 58 31739 - 31769 + F 100 -5.6 -6.17268 | overlap 31742 31743 TTTTCTGTATTGATG TGTGTTATATGAAT GTT ATTCATATAAATCA TTTTTTTTCTTCTAA TERM 59 31743 - 31765 + F 76 -9.4 -2.79092 | overlap 31742 31739 CTGTATTGATGTGTG TTATATGAAT GTT ATTCATATAA ATCATTTTTTTTCTT vlp-c_2 31846 - 32967 + | vlp protein, gamma subfamily TERM 60 33015 - 33041 + F 93 -7.4 -5.20781 | opp_overlap 33015 AAGTCATAAAGTGAA GATACTAAGAGT TAA GCTTTTGGTATC TTTTATTTTATAGTG vsp 33587 - 34315 + | vsp protein TERM 61 34361 - 34393 + F 100 -7.1 -5.56264 | AATTAGGTCAAAAAA TAGAAGCTAGGAGTA TTG TTCTTTTGGCTTCTA TTTTTTGTATTTAAA TERM 62 34699 - 34686 - f 76 -8.1 -3.67918 | AATGAAGACGCTAAA CCTGC AGAA GCAGG AAGTGTTAATAAATT TERM 63 35005 - 34965 - f 74 -5.5 -4.75776 | AATGGAATTGAAAAA GCAACAGATGCAGCA GGAATTGCAAT TGCTCCTTCTGTTGC TAATAAGAAAGAGAT TERM 64 35352 - 35369 + F 100 -7 -5.95539 | opp_overlap 35351 35354 AAAAACTTAGTTAAT GAGAGC AATCAA GCTCTC TTTTTTTATTTGCAG vlp-c_3 35447 - 36466 + | vlp protein, gamma subfamily TERM 65 36511 - 36547 + F 100 -11.9 -4.52047 | opp_overlap 36511 GAGAAAAATTATAAA TTAAAGATACTAGGAAT TAA GTTCTTGGTATCTTTAA TTTTGTAGTGTACTA TERM 66 36547 - 36511 - f 74 -6.8 -4.2928 | opp_overlap 36511 GAGAAAAATTATAAA TTAAAGATACTAGGAA TTAAG TTCTTGGTATCTTTAA TTTTGTAGTGTACTA TERM 67 37882 - 37901 + F 100 -5.7 -5.95539 | opp_overlap 37882, overlap 37879 TAAATAATTAGTTAA GAGGGCT TATTTT AGCTCTC TTTTTTTATTTGCGG TERM 68 37922 - 37941 + F 100 -8 -5.66868 | TTATTTGCGGTATTG TATGTGTT ATAT AACACATA TTTTTTTGCTTCCTT vlp-d_2 38002 - 39054 + | vlp protein, delta subfamily SEQUENCE gi|203288751|ref|NC_011256.1| Borrelia duttonii Ly plasmid pl70, complete sequence (length 66407) BDU_2001 1561 - 302 - | hypothetical protein TERM 1 1364 - 1339 - G 70 -5.7 -4.28018 | gap 1, opp_overlap 1345, overlap 1342 AAGATGGTACTAAAA TA-ATTACCATT GTA AATGGTAATGTA AAATATAATTTATAA TERM 2 1360 - 1342 - G 86 -9 -4.25658 | opp_overlap 1345, overlap 1339 ATGGTACTAAAATAA TTACCATT GTA AATGGTAA TGTAAAATATAATTT bdr_1 2895 - 2176 - | BdrQ-like protein TERM 3 3022 - 2987 - R 100 -13.6 -5.49569 | opp_overlap 2993 2996 TACTAATACAAAAAA GAATAAGACCAACAAC AAAA GTTATTGATCTTATTC AAGGGTGTATTCATG TERM 4 3122 - 3138 + r 100 -6.7 -5.47159 | overlap 3123 GATAAAATCGATTGT TGAAAAA ATA TTTTTCA TTTTTTCTATTCCGC BDU_2003 6534 - 3145 - | hypothetical protein TERM 5 3314 - 3334 + g 70 -8.5 -2.57974 | opp_overlap 3307, overlap 3309 GCAATAATTCTTGCT TCAAAATTT CTC AAATTTTGA TCAATTGGTGCTGGT BDU_2004 7593 - 6769 - | hypothetical protein TERM 6 6986 - 6973 - G 70 -2.3 -5.47914 | opp_overlap 6980 AAAAAGTACAAAAAA CTCGT AATT ACGTG GTAACATTTGTTTAC TERM 7 7560 - 7570 + g 71 -8.2 -3.29063 | opp_overlap 7557 7560, overlap 7559 CAGATACCAAAACAA GCCC TAA GGGC ATTTTCAATTTTTGT TERM 8 7570 - 7560 - G 81 -8.2 -4.30909 | opp_overlap 7560 7559, overlap 7557 CAGATACCAAAACAA GCCC TAA GGGC ATTTTCAATTTTTGT BDU_2005 8434 - 7586 - | hypothetical protein BDU_2006 8884 - 8435 - | hypothetical protein TERM 9 9053 - 9011 - R 100 -14.5 -3.40522 | opp_overlap 9003 9011 AGTCCCTTATGAGAA GCCCATATTCTAATCCTAG ATAAG CTAAGATTAGAATATGAAC TGTATGCATCCCCTG BDU_2007 9601 - 9233 - | hypothetical protein BDU_2009 11210 - 10377 - | hypothetical protein BDU_2010 11774 - 11232 - | hypothetical protein BDU_2011 12348 - 11746 - | hypothetical protein BDU_2012 13385 - 12348 - | hypothetical protein BDU_2013 14601 - 13405 - | hypothetical protein TERM 10 14372 - 14414 + g 76 -3.8 -5.44638 | gap 2 CGACGTAAGTTATAT CTACTCAG-CAATTC-TAAA ATCTC TTTATGAATTGATTGGGTAG TTTTGTTTTTCTTCT BDU_2014 14949 - 14605 - | hypothetical protein BDU_2015 15765 - 14968 - | hypothetical protein BDU_2016 16538 - 15759 - | hypothetical protein TERM 11 16464 - 16474 + g 73 -5.4 -4.78149 | overlap 16459 TTCCATATTTCCAAC TCCA AAT TGGA TTTTTACATTATCAG BDU_2017 19342 - 16538 - | hypothetical protein TERM 12 16681 - 16656 - G 74 -2.7 -5.60993 | TTCTTTACAAAAAAA TCTTTTACTAA CAAA TCAACAAAAGA ACTACTCTTCAAGCC TERM 13 18906 - 18896 - G 71 -4 -5.00616 | TTCTTTTCTAAAAAA TAGA AAA TCTA AAAATTCATTTGAAA BDU_2018 19740 - 19354 - | putative lipoprotein BDU_2019 20130 - 19756 - | hypothetical protein BDU_2020 20850 - 20155 - | hypothetical protein BDU_2021 21262 - 20837 - | hypothetical protein BDU_2022 21505 - 22143 + | hypothetical protein TERM 14 22436 - 22406 - f 82 -4.2 -5.71712 | gap 1, opp_overlap 22406 22434 TGGTATATAAAAAAA TCAC-CTTAACTA CAAAAC TAGTCAAGAGTGA AATTTTCATATATAA TERM 15 22506 - 22494 - f 93 -6.3 -5.42198 | CTTCAAAAAAGAAAA TCCAA ACT TTGGA CAAAAATAAAAATCA TERM 16 24110 - 24098 - g 72 -4.9 -4.87328 | CAGACAAAGATAAAA TTTTG ATG CAAAA TGCAAAAGGAGAGAC BDU_2023 22525 - 24132 + | hypothetical protein TERM 17 24537 - 24525 - g 72 -3.4 -5.22006 | TCAGGAGAAGAAAAA GATC AAAAA GATC AATCTGTAGATCAAG BDU_2024 24129 - 24671 + | BBG30-like protein bdr_2 25412 - 24735 - | bdr protein BDU_2026 26298 - 25489 - | hypothetical protein TERM 18 25646 - 25673 + g 100 -7.2 -5.60993 | overlap 25669 25670 GATTCAATTAGGTTG GCAATAGTAGAT TGTA ATTTATTATTGC TTTTTTTATAAAAAA TERM 19 26232 - 26251 + g 82 -4.4 -5.66989 | TATTATTTGTACTAT TGTTAAAT GTTT GTTTAACA TTTTTTTGATGTTTG TERM 20 26270 - 26280 + g 74 -2.6 -5.67967 | TTTTGATGTTTGATG TTTT TAA AAAA TTTTTTTATACTAAT TERM 21 26392 - 26370 - R 78 -10 -2.69947 | overlap 26369 CAACTTTTATAGAAT TGTTACCTTA TTA CAAGGTAACA GAACACAAATATAAA TERM 22 27594 - 27577 - R 90 -4.8 -5.95539 | opp_overlap 27577 CTGCAAATAAAAAAA GAGAGC TTTACT GCTCCC TTTAATAAAATTCTG vlp-a 28708 - 27638 - | vlp protein, alpha subfamily TERM 23 28188 - 28198 + g 88 -5.4 -5.63103 | opp_overlap 28188 ACTATTCCTTTAAAT GCAT TAT ATGC TTTTTTTAATTCAAG TERM 24 28825 - 28808 - R 90 -4.8 -5.95539 | opp_overlap 28808 CCGCAAATAAAAAAA GAGAGC TTTATT GCTCCC TTTATCAGCGTTCTT bdr_3 30097 - 29495 - | bdr protein TERM 25 32346 - 32313 - H 82 -6.2 -4.94811 | overlap 32316 TCAAAAATAAATAAA CAATTAGCAACTAC AATTTA ATAGTTGCTAATCA AATAATAATAAAAGT TERM 26 32343 - 32316 - H 83 -7.9 -4.49317 | overlap 32313 AAAATAAATAAACAA TTAGCAACTAC AATTTA ATAGTTGCTAA TCAAATAATAATAAA BDU_2033 32419 - 32853 + | MlpL-like protein, lipoprotein TERM 27 33003 - 32985 - T 100 -9 -5.22481 | overlap 32972 CATAAATAAACAAAA TGTTAACT TAA AGTTAACA CAAAAAGATAAGTTA TERM 28 34073 - 34041 - T 88 -10.1 -3.99592 | opp_overlap 34040 34041 ATGTATTACTACAAA CTAACAAAAAGAAGT TAC AATTCTCTTTGTTAG AATTTTTTATTTTAA bppA 36319 - 34967 - | BppA ppap2 36477 - 37607 + | plasmid partionning associated protein 2 TERM 29 37699 - 37680 - g 72 -6.6 -4.23207 | overlap 37674 GAAAAAGGAGATAAA TCTATTTT TATC AAAATAGA GGAAAATAATAGTAG ppap1 37617 - 38177 + | plasmid partitioning associated protein-1 TERM 30 38387 - 38374 - g 71 -2.5 -5.5604 | overlap 38379 TGAAGTAATAAAAAA TAATA TTAA TATTA ATGAATCAATATTAA pf32 38153 - 38896 + | PF32 plasmid partition protein pf49 38938 - 39471 + | PF49 plasmid partition protein TERM 31 39760 - 39809 + T 100 -16.9 -5.1523 | overlap 39757 ATCGTTTAATTAGCT TTTAGAGCTTGATTAAGCATTCT AGAA AGAGTGTTTAATTAGGCTCTAAA TTTTTATATTATAAC TERM 32 41126 - 41156 + T 73 -7 -4.06993 | opp_overlap 41136, overlap 41128 TAGTTTGAAATATTT TTGGAATAAATATC CAA GATACTTATTCCTA TTGTTTACTATATGC TERM 33 41128 - 41154 + T 82 -9.6 -3.62041 | opp_overlap 41136, overlap 41126 GTTTGAAATATTTTT GGAATAAATATC CAA GATACTTATTCC TATTGTTTACTATAT BDU_2044 41894 - 41328 - | family 113-like protein TERM 34 42062 - 42080 + H 74 -7.6 -4.00512 | opp_overlap 42059, overlap 42059 42060 TTTCAAAATAACCTT TTAAACTT TGA AAGTTTAA TGTTTTGTTATAAAG TERM 35 42888 - 42866 - g 72 -6.2 -4.39568 | overlap 42868 42869 ATTGATACAGCAAAA GATGCAGCAA ATA TTGCTGCTGC TAATAAGGAAGATAA TERM 36 42886 - 42868 - g 71 -7.4 -3.79993 | overlap 42866 42869 TGATACAGCAAAAGA TGCAGCAA ATA TTGCTGCT GCTAATAAGGAAGAT TERM 37 42885 - 42869 - g 86 -10.9 -2.87273 | overlap 42868 42866 GATACAGCAAAAGAT GCAGCAA ATA TTGCTGC TGCTAATAAGGAAGA vlp-d_1 42191 - 43180 + | vlp protein, delta subfamily TERM 38 43245 - 43261 + F 100 -8 -5.95539 | AAAGATCGAGTTGAT GAGAGC ATAGA GCTCTC TTTTTTTATTTGCAG vlp-b_1 43381 - 44454 + | vlp protein, beta subfamily TERM 39 44495 - 44533 + F 100 -8.5 -5.83211 | gap 1, opp_overlap 44495 AAGTTATTTATGTAA GGAAAATATTTTTCTCTT TATT AAG-GAGAGATATTTTCC TTTTTTGTTTTAGTG vsp_1 45556 - 46215 + | vsp protein TERM 40 46293 - 46330 + F 100 -6.5 -5.59879 | gap 1, opp_overlap 46300, overlap 46294 46300 AAGAAATAAAATTAA TA-AAAAAGCTAAGAGCA CTA TGCTCTTAGCTTGTGCTA TTTTTTATGTTTATG TERM 41 46294 - 46328 + F 78 -7.2 -4.40478 | opp_overlap 46300, overlap 46293 46300 AGAAATAAAATTAAT AAAAAAGCTAAGAGCA CTA TGCTCTTAGCTTGTGC TATTTTTTATGTTTA TERM 42 46300 - 46322 + F 100 -15 -3.66574 | opp_overlap 46300, overlap 46294 46293 AAAATTAATAAAAAA GCTAAGAGCA CTA TGCTCTTAGC TTGTGCTATTTTTTA TERM 43 46322 - 46300 - f 100 -15 -5.61689 | opp_overlap 46300 46294 46293 AAAATTAATAAAAAA GCTAAGAGCA CTA TGCTCTTAGC TTGTGCTATTTTTTA vlp-c_1 46965 - 47987 + | vlp protein, gamma subfamily TERM 44 49318 - 49352 + F 88 -5.8 -5.27779 | opp_overlap 49322, overlap 49322 TATTTAAGTATAAAG AAAACCATCTTTTTTG ATT CAGACGAGATGGTTTC TTTTTTGATGTTAAA TERM 45 49322 - 49348 + F 86 -6.6 -5.10526 | opp_overlap 49322, overlap 49318 TAAGTATAAAGAAAA CCATCTTTTTTG ATT CAGACGAGATGG TTTCTTTTTTGATGT TERM 46 50938 - 50955 + F 100 -7 -6.09196 | opp_overlap 50938 50940 ATAAATATTAGTAGA GAGAGC AAGAGG GCTCTC TTTTTTTATTTTCAG TERM 47 52212 - 52232 + F 100 -8.3 -5.51353 | opp_overlap 52207 52212 GTAATTGAAATAAAA GGCTTTCTT GTT AAGAGGGCC TTTTTGTTGTTTTTA TERM 48 53198 - 53210 + F 71 -2.7 -5.59357 | TGTTTCTGCATGTAG GAGAA TTG TTTTC TTTTTTTAGTGTAGT TERM 49 53350 - 53362 + F 76 -6.3 -4.67904 | opp_overlap 53350, overlap 53341 GAGGAGTGCAGAGAA TGCAT TTT ATGCA TTTTTGGAGTTAGTG TERM 50 54050 - 54078 + F 73 -6 -4.66002 | TATTGTAATGTTGCA CACTTCTCTCTT TAATC ATGAGGGAGGTG TTATTTTTGTTAATG TERM 51 54446 - 54468 + F 85 -4.2 -5.86976 | GTCATAAAGTGAAGA TACTAAGAGT TAA GCTTTTGGTA TTTTTTATTTTATAG vsp_2 54601 - 55206 + | vsp protein TERM 52 55295 - 55328 + F 100 -6.3 -6.17268 | gap 1, opp_overlap 55291 55301, overlap 55301 55319 AATAAAATCAATAGC TATAAAGCTAAGAGTG TAG TATTCTTAGCTTT-TA TTTTTTTTCTTGTAA TERM 53 55301 - 55323 + F 100 -7.8 -5.69976 | opp_overlap 55291 55301, overlap 55295 55319 ATCAATAGCTATAAA GCTAAGAGTG TAG TATTCTTAGC TTTTATTTTTTTTCT vsp_3 56077 - 56736 + | vsp protein TERM 54 56826 - 56851 + F 90 -6.9 -5.2197 | opp_overlap 56826 AAGTTATAAAGGGAA GATACTGAGAG TAAG CTCTTTGTATC TTTTTAATTTTTATG TERM 55 57725 - 57704 - g 91 -10.2 -4.08216 | overlap 57715 TGATGCGGCTCAAAA TGCAGCAG AGATTG CTGCTGCA AAAAAAGATGATGCT vlp-d_2 56988 - 58019 + | vlp protein, delta subfamily TERM 56 58075 - 58094 + F 86 -5 -5.64421 | opp_overlap 58077 GTAAAAAGGCTAGTA GAGAGC GCAATCAA GCTCTC TTTTTTATTTGCAGT vlp-c_2 58154 - 59164 + | vlp protein, gamma subfamily TERM 57 59361 - 59387 + F 95 -7.4 -5.40279 | AAGTTATAACGGGAA GATACTGAGAGT TAA GTTCTTAGTATC TTTTATTTTATTTTG TERM 58 60567 - 60555 - g 77 -6.3 -4.72029 | GTCAAGGGAATAAAA TACTC TGA GAGTA TTGGAGTTAACTCTA vlp-b_2 59541 - 60620 + | vlp protein, beta subfamily TERM 59 60918 - 60932 + F 90 -5.8 -5.60993 | opp_overlap 60910 AAATAGATTATATTT TACATA ATT TATGTA TTTTTTTGTAGAAAA TERM 60 61937 - 61925 - f 77 -4.9 -5.12987 | GGAAAGAAAAAGAAA TATTG ATG CAATA GCTAGAAGGTCGAGA TERM 61 62164 - 62134 - f 74 -6.9 -4.23723 | opp_overlap 62131 62134 62135, overlap 62135 CAATAGTATTTAAAA GGAGAGTCTTCTT GTTGA AAGGAGACTCTCT TAGGTTTTATTTAAG TERM 62 62163 - 62135 - f 85 -10.4 -3.13511 | opp_overlap 62134 62131 62135, overlap 62134 AATAGTATTTAAAAG GAGAGTCTTCTT GTTGA AAGGAGACTCTC TTAGGTTTTATTTAA TERM 63 62135 - 62163 + F 100 -12.6 -3.48914 | opp_overlap 62135 62134, overlap 62134 62131 AATAGTATTTAAAAG GAGAGTCTTCTT GTTGA AAGGAGACTCTC TTAGGTTTTATTTAA TERM 64 62393 - 62420 + F 85 -8.6 -4.2711 | opp_overlap 62393, overlap 62388 TTTATGATTGGAAAA CGATATTGAATT TTTT AAATCAATATCG TTTGATTATTTTTAT TERM 65 62420 - 62393 - f 83 -8.6 -4.15565 | opp_overlap 62393 62388 TTTATGATTGGAAAA CGATATTGAATT TTTT AAATCAATATCG TTTGATTATTTTTAT BDU_2060 62628 - 63221 + | hypothetical protein TERM 66 63216 - 63232 + F 78 -6.7 -4.55798 | GAATATAGAAATTCG CATTAAT AAT ATTAATG TTTTAGTTTACAGTA TERM 67 64303 - 64286 - g 71 -2.7 -5.54907 | TTTACAAAAGAAAAA CTTGAGA GAGA TCTTAAG ACACTATTAAATTAC BDU_2061 63350 - 64546 + | BBK32 immunogenic protein P35, lipoprotein SEQUENCE gi|203288797|ref|NC_011257.1| Borrelia duttonii Ly plasmid pl23, complete sequence (length 23303) BDU_13001 880 - 623 - | hypothetical protein BDU_13002 2268 - 1303 - | hypothetical protein guaB 3995 - 2544 - | inosine-5'-monophosphate dehydrogenase TERM 1 4852 - 4834 - R 82 -6.8 -4.89605 | opp_overlap 4834 4832, overlap 4830 CAAAAAAACAACAAA CTCAATAT CAA ACATTGAG TATTATATTTCACTA BDU_13005 6442 - 5087 - | guanine-hypoxanthine permease BDU_13006 7022 - 6564 - | hypothetical protein BDU_13007 7573 - 7061 - | putative lipoprotein BDU_13008 7620 - 8312 + | hypothetical protein BDU_13009 8890 - 8324 - | putative lipoprotein TERM 2 8916 - 8949 + H 71 -8.4 -2.85606 | opp_overlap 8908 GATTATACTTTTTCA TCAAAACAAAGTAA ATAAAA TAACTTTGTTTTGA TATAATAATGTATGA TERM 3 9470 - 9438 - g 87 -8 -4.66057 | overlap 9444 ATACAGAAATTAAAA GTAAAATTTCTC AATTAGAAA GAGAAATTTTAC CAATGTATAACAAAT TERM 4 10222 - 10269 + G 100 -14.8 -2.82987 | opp_overlap 10213 10223 10225 10228 10233 10239, overlap 10225 10228 10233 10239 10264 CCAATACTTACATAT ATATAAGATAATAAAAATAATT AATT AATTATTTTTATTATCTTATAA TATGGTAAATATTAA TERM 5 10268 - 10223 - g 100 -18.3 -3.02626 | opp_overlap 10222 10225 10228 10233 10239 10264, overlap 10213 10225 10228 10233 10239 CAATACTTACATATA TATAAGATAATAAAAATAATT AATT AATTATTTTTATTATCTTATA ATATGGTAAATATTA BDU_13010 8987 - 10249 + | hypothetical protein TERM 6 10225 - 10266 + F 100 -16.5 -2.67143 | opp_overlap 10213 10223 10225 10228 10233 10239, overlap 10222 10228 10233 10239 10264 ATACTTACATATATA TAAGATAATAAAAATAATT AATT AATTATTTTTATTATCTTA TAATATGGTAAATAT TERM 7 10266 - 10225 - f 100 -16.5 -3.06261 | opp_overlap 10225 10222 10228 10233 10239 10264, overlap 10213 10223 10228 10233 10239 ATACTTACATATATA TAAGATAATAAAAATAATT AATT AATTATTTTTATTATCTTA TAATATGGTAAATAT TERM 8 10228 - 10263 + F 100 -13.8 -3.484 | opp_overlap 10225 10223 10228 10233 10239, overlap 10225 10222 10233 10239 CTTACATATATATAA GATAATAAAAATAATT AATT AATTATTTTTATTATC TTATAATATGGTAAA TERM 9 10263 - 10228 - f 100 -13.8 -3.66896 | opp_overlap 10228 10225 10222 10233 10239, overlap 10225 10223 10233 10239 CTTACATATATATAA GATAATAAAAATAATT AATT AATTATTTTTATTATC TTATAATATGGTAAA TERM 10 10233 - 10258 + F 76 -7.9 -3.78879 | opp_overlap 10228 10225 10223 10233 10239, overlap 10228 10225 10222 10239 ATATATATAAGATAA TAAAAATAATT AATT AATTATTTTTA TTATCTTATAATATG TERM 11 10258 - 10233 - f 76 -7.9 -3.82664 | opp_overlap 10233 10228 10225 10222 10239, overlap 10228 10225 10223 10239 ATATATATAAGATAA TAAAAATAATT AATT AATTATTTTTA TTATCTTATAATATG TERM 12 10264 - 10316 + F 86 -11.4 -3.20236 | gap 2, opp_overlap 10225 10223 10270 10279, overlap 10225 10222 10269 10272 10279 ATTATTTTTATTATC TTATA-A-TATGGTAAATATTAATTA AAT TAATTAATATTTACCATACTCTATAA TTGCATATTGAATTG TERM 13 10269 - 10309 + F 100 -14.5 -3.01537 | opp_overlap 10270 10279, overlap 10264 10272 10279 TTTTATTATCTTATA ATATGGTAAATATTAATTA AAT TAATTAATATTTACCATAC TCTATAATTGCATAT TERM 14 10308 - 10270 - f 100 -18 -3.34043 | opp_overlap 10269 10264 10272 10279, overlap 10279 TTTATTATCTTATAA TATGGTAAATATTAATTA AAT TAATTAATATTTACCATA CTCTATAATTGCATA TERM 15 10272 - 10306 + F 100 -16.2 -2.73067 | opp_overlap 10270 10279, overlap 10269 10264 10279 TATTATCTTATAATA TGGTAAATATTAATTA AAT TAATTAATATTTACCA TACTCTATAATTGCA TERM 16 10777 - 10767 - f 73 -4 -5.36314 | CAAAAGACCAAAAAA TCTT GAC AAGA TCATACATAATTAAA TERM 17 10933 - 10947 + F 77 -5.8 -4.79451 | opp_overlap 10922, overlap 10922 TATAGAATTCTTTAA TTCTTT GAA AAAGAA TTTTATCTTTAAAAT TERM 18 11030 - 11002 - f 72 -7.8 -3.45768 | opp_overlap 11005 11018, overlap 11005 11026 GTTAATATTAATCAA TAATATAATTAA CATTT TTAATTATATTA AATTTAATAACAATT TERM 19 12528 - 12507 - g 79 -9.5 -3.32031 | overlap 12505 12503 12508 AGGAAATATAACATA CCTTGATGC ATGT GCATCAAGA TTAAGAATAAATGTT TERM 20 12527 - 12508 - g 84 -10.8 -2.58134 | overlap 12507 12505 12503 GGAAATATAACATAC CTTGATGC ATGT GCATCAAG ATTAAGAATAAATGT malX 11062 - 12693 + | PTS system, maltose and glucose-specific IIABC component acyP 12776 - 13060 + | acylphosphatase BDU_13013 13526 - 13035 - | hypothetical protein TERM 21 13105 - 13115 + g 70 -5.4 -4.55759 | ATTACTTTCATTTTA CCAA CCT TTGG TTTATTATTACTTTT TERM 22 13520 - 13504 - G 70 -5.3 -4.53034 | TCCATACAATTAAAA TATATTA CAA TAATATA AATCAAAATATTTAA resT 14940 - 13582 - | telomere resolvase TERM 23 14631 - 14664 + g 77 -6.3 -4.68601 | gap 1, opp_overlap 14629 CAATATTAGAAAGTT CTTTTATTTCTTTAGG AAT CCAAAA-AAATAAAAG TTTATTCTTTTGCCT BDU_13015 15668 - 15027 - | hypothetical protein TERM 24 15604 - 15594 - G 74 -4 -5.243 | TAAAGGAGTAAAAAA TTTC GAA GAAA CATCAAAATTACAAG TERM 25 16238 - 16228 - g 74 -4 -5.2204 | CATAATCAATAAAAA TCTT GAA AAGA TGGCTAATAAAGCAA TERM 26 16254 - 16266 + G 72 -6.3 -4.36914 | opp_overlap 16254 TGGCTAATAAAGCAA TAAGC ACA GCTTA TTTTATACAAAAAAA BDU_13016 15929 - 16867 + | hypothetical protein ppap1 16899 - 17459 + | plasmid partitioning associated protein-1 TERM 27 17574 - 17586 + G 77 -6.3 -4.76892 | opp_overlap 17574 17573 ATTTAGATCCACAAG CTAGT AGT ACTAG TTTTTACATTAATAT pf32 17435 - 18199 + | PF32 plasmid partition protein TERM 28 18241 - 18196 - f 86 -10.7 -3.46848 | gap 1, opp_overlap 18215, overlap 18200 18210 18215 GAAAATTTATCATAA CTAATAGTTCCAA-ATGGAACC AAT AGTTCCAAATTGGAACTATTGG TTTAAAGAGGTGTAT TERM 29 18237 - 18200 - f 82 -10.1 -3.4759 | gap 1, opp_overlap 18215, overlap 18196 18210 18215 ATTTATCATAACTAA TAGTTCCAA-ATGGAACC AAT AGTTCCAAATTGGAACTA TTGGTTTAAAGAGGT TERM 30 18246 - 18210 - f 100 -12.5 -3.61328 | opp_overlap 18215, overlap 18200 18196 18215 ACTAATAGTTCCAAA TGGAACCAATAGTTCCA AAT TGGAACTATTGGTTTAA AGAGGTGTATGATGA TERM 31 18241 - 18215 - f 100 -16.8 -3.28001 | opp_overlap 18215, overlap 18200 18196 18210 TAGTTCCAAATGGAA CCAATAGTTCCA AAT TGGAACTATTGG TTTAAAGAGGTGTAT TERM 32 18215 - 18241 + F 100 -16.8 -3.5525 | opp_overlap 18200 18196 18215 18210 TAGTTCCAAATGGAA CCAATAGTTCCA AAT TGGAACTATTGG TTTAAAGAGGTGTAT pf49 18255 - 18809 + | PF49 plasmid partition protein TERM 33 19010 - 19027 + T 74 -7 -4.2331 | TTAGAATAATAGGTT GGCTAC AGTAAA GTAGCC TTTGTCATTTTAATT TERM 34 19171 - 19229 + T 85 -4.2 -5.9362 | opp_overlap 19177, overlap 19177 CTTGGTTCGTAAATA AATAAAGAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTCTTTTTA TTTTTTTATATTTTG TERM 35 19177 - 19223 + T 100 -7.6 -5.89659 | opp_overlap 19177, overlap 19171 TCGTAAATAAATAAA GAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTC TTTTTATTTTTTTAT TERM 36 19223 - 19177 - T 86 -7.6 -4.78326 | opp_overlap 19177 19171 TCGTAAATAAATAAA GAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTC TTTTTATTTTTTTAT BDU_13020 19754 - 19227 - | hypothetical protein TERM 37 20071 - 20083 + H 71 -2.7 -5.50774 | TTGCATAAGTTTGAT TTTCG GGT TGAAA TTTTTGTTTATTGTA vlp-d 20445 - 21482 + | vlp protein, delta subfamily TERM 38 21680 - 21664 - f 88 -5.8 -5.31275 | overlap 21666 GGTGATGATAAAAAA GCCGCA GCTGA TGCAGC AAAAGCAGTTGGTGC TERM 39 22922 - 22912 - g 70 -6.8 -4.05446 | overlap 22913 TTTGGTAATGATAAA GCTG GTG CAGC TGCTGCTAATGCAAA vlp 22345 - 23303 + | vlp protein SEQUENCE gi|203288819|ref|NC_011259.1| Borrelia duttonii Ly plasmid pl23b, complete sequence (length 23036) BDU_14001 1615 - 1 - | hypothetical protein TERM 1 1587 - 1599 + g 70 -6.3 -4.12738 | TCTTTTGTTTTTTTA TCCAA AGT TTGGA TTTCGTTTAATATCA TERM 2 1632 - 1660 + H 76 -3.9 -5.55001 | overlap 1622 GAGCTTTGGACTTTA GTCTAATTAGATC TTA GATTCTATTAGAC TTTTATTTTTTATTA BDU_14002 1930 - 2754 + | hypothetical protein TERM 3 3551 - 3569 + T 70 -2.4 -5.56673 | ATTCGACACTAAGTA GAATTTAC TCT GTGTATTC TTTTTTATTATCCAT BDU_14003 4736 - 3555 - | multidrug-efflux transporter TERM 4 3795 - 3780 - G 87 -4.8 -5.75342 | TTTTCTTAAAAAAAA TTCTAA ATTA TTAGAA TAAAGAGAAACTAAA BDU_14004 5812 - 4733 - | hypothetical protein TERM 5 5796 - 5854 + g 100 -16.7 -3.42274 | opp_overlap 5798 5805, overlap 5805 TTTATAACCTCTGAA TATTTAAAATCAAGCATACCAAA CTTTTTATCATCA TTTGGTATGCTTGATTTTAAATA TTAGTTAAGTGTTTT TERM 6 5852 - 5798 - G 100 -15.6 -3.04799 | opp_overlap 5796 5805, overlap 5805 TATAACCTCTGAATA TTTAAAATCAAGCATACCAAAC TTTTTATCATC ATTTGGTATGCTTGATTTTAAA TATTAGTTAAGTGTT TERM 7 5805 - 5845 + g 83 -8.6 -4.29928 | opp_overlap 5805 5798, overlap 5796 TCTGAATATTTAAAA TCAAGCATACCAAA CTTTTTATCATCA TTTGGTATGCTTGA TTTTAAATATTAGTT TERM 8 5845 - 5805 - G 88 -9.3 -4.28254 | opp_overlap 5796 5805, overlap 5798 TCTGAATATTTAAAA TCAAGCATACCAAAC TTTTTATCATC ATTTGGTATGCTTGA TTTTAAATATTAGTT TERM 9 5942 - 5924 - R 72 -3.2 -5.31545 | overlap 5916 AATAATATTAAAAAA TATCTTTA ATT TCAAGATA TTAAAAAATAAATTT TERM 10 6087 - 6066 - R 70 -3.9 -5.14563 | overlap 6081 TTTTTTATTAAAAAA TATCAAAAT GAAA ATTTTAATA TTTGGATATTAAAGG TERM 11 6229 - 6250 + r 88 -10.3 -3.85518 | ATATTCCATATTTTA TGCATGAAA TTAA TTTCATGCA TTCTTAATTACTATT pf49 6814 - 6254 - | PF49 plasmid partition protein TERM 12 6282 - 6305 + g 73 -3.2 -5.47159 | opp_overlap 6282 TTTAAATTCTTAAAT TTTGTTTGAA GCTT TCCAAGCAAA TTTTTTCTATTAAAA TERM 13 6835 - 6855 + r 86 -11.3 -3.19091 | ATTCTCCCTATTTGT TTTTTCCGT ATT ACGGAAAAA TTCATAAATAGCTGT pf32 7578 - 6817 - | PF32 plasmid partition protein TERM 14 8417 - 8429 + H 82 -6.3 -4.93696 | opp_overlap 8417 8415 ATTATGAAAATGATA TCCTT GAG AAGGA TTTTTACTATTTAGA TERM 15 8744 - 8763 + H 76 -8 -3.68936 | TTATTATTTATTGTG GCATATTT TTAA AAATATGC TTGTTAAAATTAGTA TERM 16 9584 - 9570 - g 75 -7.2 -4.11363 | overlap 9562 AATAAGATCAAAGAA CACTTT GAA AAAGTG AAAACTCAATTAGAA vlp-b 9009 - 10310 + | vlp protein, beta subfamily TERM 17 11367 - 11357 - f 73 -6.8 -4.06864 | overlap 11358 GTCACAGAACAACAA GCTG CAG CAGC AAGTGCATCAATAGG TERM 18 11583 - 11602 + F 100 -5.7 -5.95539 | opp_overlap 11583, overlap 11580 TAAATAATTAGTTAA GAGGGCT TATTTT AGCTCTC TTTTTTTATTTGCAG TERM 19 12779 - 12767 - g 77 -6.3 -4.72029 | GTTAAGGGAATAAAA TACTC CGA GAGTA GTGTAACTGAGACTA vlp_1 11729 - 12832 + | vlp protein TERM 20 12853 - 12883 + F 100 -13.5 -5.14163 | opp_overlap 12858 AAATTATGTAACTGT TAACACTTCTCTG TAATC CAGAGAGGTGTTA TTTTTGTTACTCGAT TERM 21 14374 - 14391 + F 90 -4.8 -5.95539 | opp_overlap 14374 ATAAAGATTAGTAAA GGGAGC AAAAAA GCTCTC TTTTTTTATTTGCAG vsp 14511 - 15158 + | vsp protein TERM 22 16759 - 16776 + F 100 -5.5 -5.95539 | AAGAATATTACTAAA GGGAGCC ATGA GGTTCTC TTTTTTTATTTACGG vlp_2 16977 - 17957 + | vlp protein TERM 23 18018 - 18044 + F 73 -2.3 -5.80248 | TGTAAATTTGATAAA CAGGAATGTCT TGTAT GGGTATTTCTG TTTTTTTATCTATTA vlp-d_1 18673 - 19740 + | vlp protein, delta subfamily TERM 24 19807 - 19824 + F 100 -7 -5.95539 | opp_overlap 19806 19809 AAAAACTTAGTTAAT GAGAGC AATAAA GCTCTC TTTTTTTATTTGCGG vlp-d_2 19929 - 20996 + | vlp protein, delta subfamily SEQUENCE gi|203288832|ref|NC_011261.1| Borrelia duttonii Ly plasmid pl26, complete sequence (length 26917) BDU_12001 378 - 1082 + | hypothetical protein ppap1 1111 - 1671 + | plasmid partitioning associated protein-1 TERM 1 2367 - 2396 + G 86 -9.7 -3.78902 | opp_overlap 2357 2375 2376 GAATATAAGAATTCC TTAATTAATTTTT TTGC AAAAATTAATTAA TTTGAATATTAGTTC pf32 1647 - 2396 + | PF32 plasmid partition protein pf49 2452 - 3027 + | PF49 plasmid partition protein TERM 2 3325 - 3269 - f 100 -18.6 -3.00786 | opp_overlap 3269, overlap 3265 3262 3275 TTTAAAAGGCAGAGA TTTAAATCCCTGTTAACAATTTTATT GTAGT AATATAGTTGTTAACAGGGATTTAAA TTTTTTGTTTCAAAT TERM 3 3269 - 3325 + F 100 -21.5 -5.64421 | opp_overlap 3265 3262 3269 3275 TTTAAAAGGCAGAGA TTTAAATCCCTGTTAACAATTTTATTG TAG TAATATAGTTGTTAACAGGGATTTAAA TTTTTTGTTTCAAAT TERM 4 3319 - 3275 - f 100 -13.2 -3.74345 | opp_overlap 3269, overlap 3265 3262 3269 AGGCAGAGATTTAAA TCCCTGTTAACAATTTTATT GTAGT AATATAGTTGTTAACAGGGA TTTAAATTTTTTGTT TERM 5 3483 - 3469 - g 76 -7.2 -4.37337 | overlap 3459 ACAAATATTAATAAA TCCATT AAT AATGGA GTAAAAAAAGTGAAT bppA 3445 - 4806 + | BppA protein TERM 6 5164 - 5191 + G 86 -9.4 -3.72576 | opp_overlap 5164 5167, overlap 5167 AGGTGAGTGGAGAGA TAATGCACAATT TTTT AATTGTGTATTA TTTGGTAAACGAGCA TERM 7 5167 - 5188 + G 70 -6.7 -4.00042 | opp_overlap 5164 5167, overlap 5164 TGAGTGGAGAGATAA TGCACAATT TTTT AATTGTGTA TTATTTGGTAAACGA ssb 4970 - 5449 + | single-stranded DNA-binding protein bppB 5495 - 5911 + | BppB TERM 8 6125 - 6135 + T 70 -4 -5.16151 | CATTTTTTTATTATG TCAA ATC TTGA TTTTTGTTAAATTTG TERM 9 6226 - 6258 + T 88 -10.1 -4.01184 | opp_overlap 6226 6225 CCCCCAAAAAAAATT CTAACAAAGAGAATT GTA ACTTCTTTTTGTTAG TTTGTAGTAATATAT bppC 7080 - 6328 - | BppC TERM 10 7384 - 7402 + r 100 -9 -5.02357 | overlap 7396 TAACTTATCTTTCCC TGTTAACT TCA AGTTAACA TTTTGTTTACTTATA BDU_12009 7981 - 7535 - | MlpL-like protein, lipoprotein BDU_12010 8116 - 8655 + | family 115-like protein bsr 8660 - 10012 + | bsr protein bdr 10024 - 10527 + | bdr protein BDU_12013 10681 - 11943 + | hypothetical protein BDU_12014 11950 - 12660 + | hypothetical protein BDU_12015 12673 - 13227 + | hypothetical protein TERM 11 13433 - 13422 - g 73 -3 -5.4433 | overlap 13427 ACAGAGAAAGAAAAA CAAT ACAG ATTG GCATATCTGAGACTG BDU_12016 13227 - 14003 + | hypothetical protein TERM 12 14117 - 14135 + G 86 -9 -4.07568 | opp_overlap 14116 14117 GTAAAGAAGTAGAAC TCAAAAGT AAT ACTTTTGA TTTTAGAAACAAAGG TERM 13 14135 - 14117 - g 74 -9 -2.78358 | opp_overlap 14117, overlap 14116 GTAAAGAAGTAGAAC TCAAAAGT AAT ACTTTTGA TTTTAGAAACAAAGG BDU_12017 14026 - 14586 + | hypothetical protein BDU_12018 14602 - 15570 + | hypothetical protein BDU_12019 15580 - 16053 + | hypothetical protein BDU_12020 16032 - 16448 + | hypothetical protein BDU_12021 16432 - 16824 + | hypothetical protein TERM 14 17235 - 17222 - g 82 -5.3 -5.55664 | TGACTACCAAAAAAA TGTGA AATT TCACA TTCGCCATACAACAA BDU_12022 16821 - 17381 + | hypothetical protein BDU_12023 17371 - 18501 + | hypothetical protein TERM 15 18638 - 18660 + G 71 -7.9 -3.61589 | overlap 18633 GGGACCTCCGGTAGT TAGTTTTAG AGACC CTAAAACTA TTACTTTCATATTCA BDU_12024 18501 - 18926 + | hypothetical protein BDU_12025 18946 - 19383 + | hypothetical protein BDU_12026 19396 - 19626 + | hypothetical protein BDU_12027 19623 - 21101 + | hypothetical protein BDU_12028 21113 - 21748 + | hypothetical protein BDU_12029 21753 - 22952 + | hypothetical protein TERM 16 22998 - 22985 - g 73 -8.1 -3.50332 | opp_overlap 22984 22985, overlap 22981 TATTTACAGAATGAA CAGCC AAAT GGCTG GTTCTGCGTTAACAC BDU_12030 22953 - 23495 + | hypothetical protein TERM 17 23490 - 23476 - f 70 -3.6 -5.24647 | ATATACAAAACAAAA TAAACA TGT TGCTTA AATAGTTTTTAGCAA BDU_12031 23557 - 23889 + | hypothetical protein TERM 18 24212 - 24231 + G 70 -5.8 -4.37544 | gap 1, opp_overlap 24211 24212, overlap 24206 24216 CTCAAATATCAAAAG TACT-GCTG GTA CAGCTAGTA TTTATGTTATTGTAG TERM 19 24554 - 24568 + G 79 -3.6 -5.56568 | overlap 24556 TGATATGGGAATTAG TTTTGA ATA TCAAGA TTTTTTTGCTCCTGT BDU_12032 23886 - 24767 + | hypothetical protein BDU_12033 24780 - 25400 + | hypothetical protein TERM 20 25612 - 25594 - g 77 -3 -5.63504 | overlap 25596 AATTGCACAAAAAAA CATTCGTC AAA GGCGAAGG CGTTAATGATTTTAA BDU_12034 25413 - 26279 + | hypothetical protein SEQUENCE gi|203288867|ref|NC_011262.1| Borrelia duttonii Ly plasmid pl31, complete sequence (length 31021) vlp-d 1214 - 165 - | vlp protein, delta subfamily TERM 1 1401 - 1375 - H 100 -7.4 -5.94214 | opp_overlap 1377 1387 AACATAATAAAAAAA GATACTAAGCAT CTA ACTCTTAGTATC TTACCGTTATAATTT TERM 2 2716 - 2699 - H 87 -2.6 -6.34616 | CTAAAATAAAAAAAA GAGGGC TCTCTT GCTCTC CCTTTGCCAAAATTC TERM 3 4151 - 4140 - g 73 -3 -5.42605 | opp_overlap 4140 TGAATAAAAATAAAA GTAT ATTA ATAC TTTGCATTATATTAT TERM 4 4279 - 4267 - g 75 -7.7 -3.99236 | CCTACAAAAAATCAA CTCAG ATA CTGAG GAAAAAAATAGATTT TERM 5 4300 - 4288 - g 79 -4.9 -5.53991 | opp_overlap 4288 TACTGAGGAAAAAAA TAGAT TTG ATCTA TTAATGTACGGGCTT TERM 6 4404 - 4381 - g 86 -9 -4.16842 | opp_overlap 4380 4384 4387, overlap 4385 TCTAGTTTCAATAAA CAAATACGAA ATCT TTCGTACTTG GATTTTAGATAAGTC TERM 7 4400 - 4385 - g 77 -6.2 -4.67607 | opp_overlap 4384 4380 4387, overlap 4381 GTTTCAATAAACAAA TACGAA ATCT TTCGTA CTTGGATTTTAGATA BDU_9005 4124 - 4774 + | ORFk-like protein, lipoprotein TERM 8 4847 - 4818 - f 76 -8 -3.70003 | opp_overlap 4826, overlap 4816 4819 AAAAATAAGTAAACA TTTAGCAACTAC GACTTA GTAGTTGCTAAT CAAATAATAATCAAA TERM 9 4846 - 4819 - f 87 -11.5 -2.79562 | opp_overlap 4826, overlap 4818 4816 AAAATAAGTAAACAT TTAGCAACTAC GACTTA GTAGTTGCTAA TCAAATAATAATCAA BDU_9006 5019 - 5450 + | MlpL-like protein TERM 10 5602 - 5582 - f 70 -5.5 -4.62392 | overlap 5573 5578 5583 GAATAAGTAAACAAA TTGTTAACT TGA AGTTAACAT AAAAGGACAAGTTAA TERM 11 5601 - 5583 - f 77 -9 -3.35809 | overlap 5573 5578 5582 AATAAGTAAACAAAT TGTTAACT TGA AGTTAACA TAAAAGGACAAGTTA TERM 12 6623 - 6591 - f 88 -10.1 -4.01184 | opp_overlap 6590 6591 ATATACTACTACAAA CTAACAAAAAGAAGT TAC AATTCTCTTTGTTAG AATTTTTTATTTTAG TERM 13 7281 - 7267 - g 71 -4.3 -4.88918 | TGACTGTAAAGAAAA TCCTT CATGT AAGGA TACAAAGAAATATGG mlpJ 6848 - 7426 + | MlpJ protein bppB 7958 - 7476 - | BppB protein ssb 8477 - 8004 - | single stranded DNA-binding protein TERM 14 8283 - 8256 - G 86 -9.4 -3.72576 | opp_overlap 8256 8259, overlap 8259 GGCTCGTTTACCAAA TAATACACAATT AAAA AATTGTGCATTA TCTCTCCACTCACCT TERM 15 8280 - 8259 - G 70 -6.7 -4.00042 | opp_overlap 8259 8256, overlap 8256 TCGTTTACCAAATAA TACACAATT AAAA AATTGTGCA TTATCTCTCCACTCA TERM 16 10202 - 10153 - R 100 -16.2 -5.61913 | opp_overlap 10159 AATAAACACAAAAAA TTAGAACTTAATTAAGACATTC TAGATC GAAAGCCTTAATTAAGTTCTAA CGTCTCTAAACGATA pf49 10974 - 10450 - | PF49 plasmid partition protein TERM 17 10497 - 10515 + g 78 -9 -3.18264 | opp_overlap 10496 10497 GCTTCTCAAGTAAAT CTTTTTGA TTT TCAAAAAG TTCATCCATCAAAAA TERM 18 10515 - 10497 - G 74 -9 -2.93853 | opp_overlap 10497, overlap 10496 GCTTCTCAAGTAAAT CTTTTTGA TTT TCAAAAAG TTCATCCATCAAAAA TERM 19 10996 - 11009 + r 71 -6.7 -3.88331 | ATCACCTCATAATTT TTCCG GCGC CGGAA TTACTTTTGTTTAAA pf32 11806 - 11033 - | PF32 plasmid partition protein ppap1 12342 - 11782 - | plasmid partitioning associated protein-1 TERM 20 12258 - 12279 + g 100 -10.3 -5.4593 | TTCTATTTTCAATTT CCTCTATTT TAAC AAATAGAGG TTTTTCTTCTTTTGG ppap2 13518 - 12352 - | plasmid partitioning associated protein-2 TERM 21 12586 - 12596 + g 82 -5.4 -5.42862 | ATCATATTGTGATTT CAGA TTC TCTG TTTTTTTAACCGTCT TERM 22 13565 - 13601 + H 75 -8.4 -3.35679 | opp_overlap 13563, overlap 13566 ATTAGTAAAAATGTC ATTTGATATTATTTTT ATCAA AAAAATAATATCAAAA TTATAAGTCGAAAGA TERM 23 13566 - 13600 + H 87 -11.9 -2.61264 | opp_overlap 13563, overlap 13565 TTAGTAAAAATGTCA TTTGATATTATTTTT ATCAA AAAAATAATATCAAA ATTATAAGTCGAAAG TERM 24 13972 - 13987 + G 74 -6.2 -4.58466 | opp_overlap 13972 TGGTAATTTAGTAGA TGTTGT TACA ACAACA TTTTATAGTTCTGCA BDU_9016 13649 - 14533 + | hypothetical protein TERM 25 14748 - 14729 - T 100 -12.2 -4.33248 | opp_overlap 14724 14722 14732 TAACGTGATAATAAA TAAGCCCC ATCA GGGGCTTA AATAATTAATTTTTC TERM 26 14732 - 14745 + T 78 -9.5 -3.15252 | opp_overlap 14729, overlap 14724 14722 CGTGATAATAAATAA GCCCC ATCA GGGGC TTAAATAATTAATTT BDU_9018 15122 - 14754 - | hypothetical protein TERM 27 14999 - 15011 + g 70 -6.3 -4.07746 | opp_overlap 14995, overlap 14995 CTTCATAAGTACTGA TCTCT TTA AGAGA TTCTGTTTTTGGAAG TERM 28 15403 - 15421 + r 74 -5.4 -4.76087 | TGTCATTATTATTTT TTTGTAGA AGT TCTATAAA TTTATTTATTATATC TERM 29 16048 - 16025 - R 72 -6.2 -4.26003 | overlap 16014 AGAAGATTTAACAAA TCATATAAAA CTAT TCTTATATGA GGATTATATTAGGAT TERM 30 16348 - 16388 + r 91 -10 -4.46675 | overlap 16351 16352 TATCTCCATTATTGG TATTCATTATTAAAAGGC TATAT GCCTTTTAATAATGCTTA TTTATTATGTTAAAT TERM 31 16351 - 16385 + r 100 -11.7 -4.33203 | overlap 16348 16352 CTCCATTATTGGTAT TCATTATTAAAAGGC TATAT GCCTTTTAATAATGC TTATTTATTATGTTA TERM 32 16352 - 16384 + r 100 -15.2 -3.18295 | overlap 16351 16348 TCCATTATTGGTATT CATTATTAAAAGGC TATAT GCCTTTTAATAATG CTTATTTATTATGTT TERM 33 17181 - 17194 + r 86 -6.7 -4.99643 | opp_overlap 17183 CCATCTATTTGCAAT GAGAG ATAT CTCTC TTCTTTTTTTTAATC TERM 34 17219 - 17237 + r 100 -9 -5.02357 | overlap 17231 TTAATCTAACTTCTC TGTTAACT TCA AGTTAACA TTTTGTTTACTTATA BDU_9022 18658 - 17960 - | ORFk-like protein, lipoprotein TERM 35 18218 - 18237 + g 74 -5 -5.10877 | GATGTATTGCATAGT GGTCTGAT CATT GTCAGATC TTTTTAGTTTATTAT TERM 36 18631 - 18642 + g 73 -3 -5.42605 | opp_overlap 18631 ATAATATAATGCAAA GTAT TAAT ATAC TTTTATTTTTATTCA TERM 37 19657 - 19631 - H 72 -4.5 -5.09225 | opp_overlap 19631, overlap 19633 ACTTTACTTAAAAAA TAGGCATCTTT ATGAG AAAGATACCAA TAATTTTATATTAGG TERM 38 19655 - 19633 - H 73 -7.1 -4.17608 | opp_overlap 19631, overlap 19631 TTTACTTAAAAAATA GGCATCTTT ATGAG AAAGATACC AATAATTTTATATTA bdr_1 20759 - 21397 + | bdr protein TERM 39 21779 - 21796 + F 90 -4.8 -5.95539 | opp_overlap 21779 AAAAGTATTAGTAAA GGGAGC AATAAA GCTCTC TTTTTTTATTTGCAG vsp 22011 - 22619 + | vsp protein vlp-c_1 23140 - 24264 + | vlp protein, gamma subfamily TERM 40 24325 - 24351 + T 93 -7.4 -5.23292 | AAGTTGTAAGGGAGA GATACTGAGAGT TAA GCTTTTAGTATC TTTTATTTTATATAG TERM 41 25347 - 25380 + T 77 -7.6 -4.25754 | opp_overlap 25349 25357, overlap 25342 25349 25350 ACTTTGATTATTATA TAGTTAGCAACTAC AAAATC GTAGTTGCTAAATG TTTACTTATTTTTGA TERM 42 25349 - 25378 + T 76 -8 -3.70003 | opp_overlap 25349 25357, overlap 25347 25342 25350 TTTGATTATTATATA GTTAGCAACTAC AAAATC GTAGTTGCTAAA TGTTTACTTATTTTT TERM 43 25378 - 25349 - T 71 -8.7 -2.96216 | opp_overlap 25349 25347 25342 25350, overlap 25357 TTTGATTATTATATA GTTAGCAACTACA AAAT CGTAGTTGCTAAA TGTTTACTTATTTTT TERM 44 25350 - 25377 + T 87 -11.5 -2.79562 | opp_overlap 25349 25357, overlap 25349 25347 25342 TTGATTATTATATAG TTAGCAACTAC AAAATC GTAGTTGCTAA ATGTTTACTTATTTT BDU_9029 26114 - 25422 - | ORFk-like protein, lipoprotein BDU_9030 26269 - 26808 + | family 115-like protein TERM 45 26980 - 26967 - f 70 -5.3 -4.67552 | opp_overlap 26967, overlap 26964 TTGACTAAAAAACAA CGTAA AGTG TTACG TGATATTGAAAAGAA bdr_2 28021 - 28581 + | bdr protein TERM 46 28960 - 28977 + F 93 -4.8 -6.02919 | opp_overlap 28960 AAAAGTATTAGTAAA GGGAGC AATAAA GCTCTC TTTTTTTATTTGTGG TERM 47 29909 - 29895 - g 73 -8.6 -3.01791 | overlap 29897 ATGCTGTTGCTAATA TAGCTG CTG CAGCTA ATGCTAAAGATGCAA vlp-c_2 29081 - 30187 + | vlp protein, gamma subfamily SEQUENCE gi|203288888|ref|NC_011264.1| Borrelia duttonii Ly plasmid pl32, complete sequence (length 31663) BDU_8001 888 - 34 - | antigen P35-like protein TERM 1 3504 - 3487 - R 90 -4.8 -5.95539 | opp_overlap 3487 CTGCAAATAAAAAAA GAGAGC CCTATT GCTCCC CTTACTAATATTTAT vlp-a 4650 - 3562 - | vlp protein, alpha subfamily TERM 2 4772 - 4755 - R 90 -4.8 -5.95539 | CCGCAAATAAAAAAA GAGAGC TCTATT GCCCTC ATTAACTAAGTTTTT vlp-d_1 5811 - 4837 - | vlp protein, delta subfamily vlp-c 7060 - 6029 - | vlp protein, gamma subfamily TERM 3 7193 - 7176 - R 90 -4.8 -5.96894 | opp_overlap 7176 ACGCAAATAAAAAAA GAGAGC TTTATT GCTCCC TCTATTAACATTCTT TERM 4 8413 - 8396 - R 100 -5.5 -5.95539 | CTGTAAATAAAAAAA GAGAACC TCAT GGCTCCC TTTACTAATATTCTT vlp-d_2 9485 - 8451 - | vlp protein, delta subfamily TERM 5 9665 - 9639 - R 95 -7.4 -5.40279 | CAAAATAAAATAAAA GATACTAAGAAC TTA ACTCTCAGTATC TTCCCGTTATAACTT TERM 6 10940 - 10927 - R 93 -3.8 -6.23545 | TGCAAATAAAAAAAA GAGC TTCATT GCTC CCTTTGCCAACGTTC TERM 7 12213 - 12187 - R 100 -8.1 -5.31091 | opp_overlap 12182 12187 12206 CACAATAAAACAAAA GATACTAAGAG ATTAA CTCTAAGTATC TTATATTTATAACTT TERM 8 12187 - 12213 + r 79 -8.1 -3.91369 | opp_overlap 12187, overlap 12182 12206 CACAATAAAACAAAA GATACTAAGAG ATTAA CTCTAAGTATC TTATATTTATAACTT vsp 12935 - 12291 - | vsp protein TERM 9 13077 - 13060 - R 93 -4.8 -6.14618 | opp_overlap 13060 TAGAAAATAAAAAAA GAGAGC TTTATT GCTCCC TTTACTAAAATTCTG vlp-d_3 14158 - 13136 - | vlp protein, delta subfamily TERM 10 14334 - 14300 - R 84 -5.9 -5.1417 | gap 1, opp_overlap 14301 14304, overlap 14304 TTATAAAACTAAAAA GTAATCCCAAAGATAA ATAC CTAGCTTTGGGATT-C ATTTTCCTCTCCTTT TERM 11 14331 - 14304 - R 79 -7.8 -3.91947 | opp_overlap 14301 14304, overlap 14300 AAAACTAAAAAGTAA TCCCAAAGATAA ATAC CTAGCTTTGGGA TTCATTTTCCTCTCC BDU_8013 15052 - 14459 - | hypothetical protein TERM 12 15325 - 15335 + r 81 -5.4 -5.25656 | opp_overlap 15325 ATTCTCAAAACCTAA CTAG GGA CTAG TTTTTTGCTAATTTT BDU_8014 15611 - 15441 - | hypothetical protein BDU_8015 15865 - 16395 + | putative lipoprotein TERM 13 16453 - 16480 + T 100 -13 -3.35798 | opp_overlap 16450 16449 16447 AATAAAATATATTTA CTATCATAATCT TTCA AGATTATGATAG TTCTAAGTAAAAAGT BDU_8016 17500 - 16613 - | putative lipoprotein TERM 14 16694 - 16710 + g 76 -3.8 -5.4477 | opp_overlap 16694 TAAGCTCTTAGAAGA TGTATT AAAAG AATACA TTTTTTTAAAAATTT BDU_8017 17615 - 17752 + | hypothetical protein TERM 15 17822 - 17847 + T 70 -7.9 -3.1997 | opp_overlap 17822 17826 17833, overlap 17822 17821 17840 17844 TACTAATACAAATGA TAAATTTAAAA TTTA TTTTAAATTTA ATTTATTATAAATAT TERM 16 17847 - 17822 - T 70 -7.9 -3.12253 | opp_overlap 17822 17822 17821 17840 17844, overlap 17826 17833 TACTAATACAAATGA TAAATTTAAAA TTTA TTTTAAATTTA ATTTATTATAAATAT TERM 17 18423 - 18408 - T 70 -4 -5.2696 | overlap 18401 18409 18417 TTAAAATGCAAAAAA GGAAAA AAAC TTCTCC ATCCATAAATAGAAA TERM 18 18440 - 18417 - T 82 -3.2 -5.88061 | opp_overlap 18435, overlap 18408 18409 18401 AAAAAAGGAAAAAAA CTTCTCCATC CATA AATAGAAAAG TGTTTTCCTTATTTG TERM 19 19631 - 19587 - T 100 -11.1 -4.91987 | opp_overlap 19590, overlap 19579 19575 19590 19625 AATTTAACAATAAAA TAGGTTCTATTGATAATTCTA GCT TAAAATCATCAACAGAACTTA CTAAAGTTCAAAGAC TERM 20 19628 - 19590 - T 100 -12.8 -3.02865 | opp_overlap 19590, overlap 19579 19575 19587 19625 TTAACAATAAAATAG GTTCTATTGATAATTCTA GCT TAAAATCATCAACAGAAC TTACTAAAGTTCAAA pf49 20302 - 19703 - | PF49 plasmid partition protein TERM 21 20313 - 20339 + r 86 -8.8 -4.24342 | opp_overlap 20319, overlap 20319 TTCATTTTGGCTCCT TTGAAAGTGCGT TTA ACGCACTATTAA TTTCTTAGTCAAAAA TERM 22 20319 - 20333 + r 82 -10 -3.42564 | opp_overlap 20319, overlap 20313 TTGGCTCCTTTGAAA GTGCGT TTA ACGCAC TATTAATTTCTTAGT TERM 23 20333 - 20319 - R 84 -10 -3.53012 | opp_overlap 20313 20319 TTGGCTCCTTTGAAA GTGCGT TTA ACGCAC TATTAATTTCTTAGT pf32 21077 - 20325 - | PF32 plasmid partition protein TERM 24 20868 - 20912 + g 75 -5.9 -4.78107 | opp_overlap 20867 20868 20878, overlap 20879 TGTTTCATTTAAAAC TCTATAGATATTGATATTGAC AAC GTCAATATCATTTTCTATTAA TTTTTCATGATAATA TERM 25 20912 - 20868 - G 70 -8.1 -3.10597 | opp_overlap 20868 20879, overlap 20867 20878 TGTTTCATTTAAAAC TCTATAGATATTGATATTGAC AAC GTCAATATCATTTTCTATTAA TTTTTCATGATAATA TERM 26 20902 - 20878 - G 73 -8.7 -3.02109 | opp_overlap 20868 20879, overlap 20868 20867 AAAACTCTATAGATA TTGATATTGAC AAC GTCAATATCAT TTTCTATTAATTTTT TERM 27 20879 - 20901 + g 100 -12.2 -4.77629 | opp_overlap 20878 20868 20867, overlap 20868 AAACTCTATAGATAT TGATATTGAC AAC GTCAATATCA TTTTCTATTAATTTT ppap1 21655 - 21053 - | plasmid partitioning associated protein-1 BDU_8022 22316 - 21639 - | hypothetical protein TERM 28 21875 - 21887 + g 93 -3.5 -6.15717 | AAGTTTTGTACCCTA TATTT TTA AAATA TTTTTTTTGTGTTTC vlp-b 23314 - 24600 + | vlp protein, beta subfamily TERM 29 24846 - 24820 - f 82 -10.4 -2.83772 | opp_overlap 24824, overlap 24794 24819 24817 ATGTCATTAAAAGAT TGAACTAACAAT AAG ATTATTAGTTCA TATAAATAGGATAAA TERM 30 25501 - 25491 - f 85 -5.4 -5.31275 | GCGGATGATAAAAAA TCAG CAA CTGA TGCATCAAAGGCTGT TERM 31 25948 - 25974 + F 70 -3.7 -5.20781 | AAGTTATAAAAGAAA GATACTGCGAG TTAAT CTCTTGGTATC TTTTATTTTGTAGTG TERM 32 26633 - 26596 - f 100 -13.3 -4.88895 | opp_overlap 26600 26604, overlap 26626 AAATAAATAAATAAA TAAATAAATATATATAT ATAT ATATATATATTTATTTA TGAATAAAGGTCATT TERM 33 26600 - 26629 + F 86 -9.7 -3.92075 | opp_overlap 26596 26626, overlap 26604 AAATAAATAAATAAA TAAATATATATAT ATAT ATATATATATTTA TTTATGAATAAAGGT TERM 34 26604 - 26625 + F 73 -6.1 -4.57482 | opp_overlap 26596, overlap 26600 AAATAAATAAATAAA TATATATAT ATAT ATATATATA TTTATTTATGAATAA BDU_8027 27665 - 28564 + | uncharacterized_conserved protein BDU_8028 29493 - 29735 + | hypothetical protein TERM 35 29800 - 29790 - f 81 -2.6 -6.07374 | overlap 29783 AGAAAAAATAAAAAA TATT TTC AATA ATCAATTTTATCTAT TERM 36 29895 - 29932 + F 90 -5.8 -5.49729 | overlap 29898 TATAAATATACCCTT GAATAAGATCAATAAC TTTTTT GTTGTTGGTCTTATTA TTTTTTTAAGTGGTT TERM 37 29898 - 29929 + F 86 -7.5 -4.8236 | overlap 29895 AAATATACCCTTGAA TAAGATCAATAAC TTTTTT GTTGTTGGTCTTA TTATTTTTTTAAGTG bdrR 30017 - 30655 + | hypothetical protein BDU_8030 30990 - 30727 - | hypothetical protein BDU_8031 31150 - 31419 + | hypothetical protein SEQUENCE gi|203288911|ref|NC_011265.1| Borrelia duttonii Ly plasmid pl27, complete sequence (length 27476) TERM 1 543 - 525 - g 80 -9 -3.57918 | AGGTAGATTAGATAA TATTGTTG GTG CAACAATA GATGGTTGGTTTGTA bppA 1 - 1371 + | BppA TERM 2 1731 - 1758 + G 86 -9.4 -3.72576 | opp_overlap 1731 1734, overlap 1734 AGGTGAGTGGAGAGA TAATGCACAATT TTTT AATTGTGTATTA TTTGGTAAACGAGCA TERM 3 1734 - 1755 + G 70 -6.7 -4.00042 | opp_overlap 1731 1734, overlap 1731 TGAGTGGAGAGATAA TGCACAATT TTTT AATTGTGTA TTATTTGGTAAACGA ssb 1591 - 2016 + | single-stranded DNA-binding protein bppB 2049 - 2465 + | BppB TERM 4 2635 - 2665 + T 100 -7.8 -5.22006 | opp_overlap 2634 CCCCAAAAAAAATTC TAACAAAGAGAATT GTA ACTTCTTTTTGTTA TTTTTATTATAGTAA bppC 3451 - 2699 - | BppC TERM 5 3755 - 3773 + r 100 -9 -5.02357 | overlap 3767 TAACTTATCTTTCCC TGTTAACT TCA AGTTAACA TTTTGTTTACTTATA BDU_11005 4330 - 3899 - | MlpL-like protein BDU_11006 4468 - 5007 + | family 115-like protein bsr 5164 - 6363 + | bsr protein bdr 6372 - 6923 + | bdr protein BDU_11009 7088 - 8350 + | hypothetical protein BDU_11010 8357 - 9067 + | hypothetical protein BDU_11011 9080 - 9634 + | hypothetical protein BDU_11012 9634 - 10347 + | hypothetical protein BDU_11013 10363 - 11331 + | hypothetical protein BDU_11014 11341 - 11814 + | hypothetical protein BDU_11015 11793 - 12209 + | hypothetical protein BDU_11016 12193 - 12585 + | hypothetical protein BDU_11017 12582 - 13142 + | hypothetical protein TERM 6 13165 - 13151 - g 80 -10 -2.89298 | opp_overlap 13150 13151 CATCTGATACAATTA GCGTCA ATT TGACGC ATTCTAGGTTGGATC TERM 7 13151 - 13165 + G 78 -10 -2.65388 | opp_overlap 13151, overlap 13150 CATCTGATACAATTA GCGTCA ATT TGACGC ATTCTAGGTTGGATC BDU_11018 13132 - 14106 + | hypothetical protein TERM 8 14243 - 14265 + G 71 -7.9 -3.61589 | overlap 14238 GGGACTTCCGGTAGT TAGTTTTAG AGACC CTAAAACTA TTACTTTCATATTCA BDU_11019 14106 - 14459 + | hypothetical protein BDU_11020 14493 - 14930 + | hypothetical protein BDU_11021 14943 - 15173 + | hypothetical protein TERM 9 15856 - 15842 - f 79 -10 -2.85346 | overlap 15841 AACATCTTACTAAAT CGGCAA TAC TTGCCG CAAAGCTTAAATCCA BDU_11023 16353 - 16988 + | hypothetical protein BDU_11024 16993 - 18192 + | hypothetical protein TERM 10 18238 - 18225 - g 73 -8.1 -3.50332 | opp_overlap 18225 18224, overlap 18221 TATTTACAGAATGAA CAGCC AAAT GGCTG GTTCTGCATTAACAC BDU_11025 18193 - 18720 + | hypothetical protein BDU_11026 18782 - 19114 + | hypothetical protein TERM 11 19437 - 19456 + G 70 -5.8 -4.37544 | gap 1, opp_overlap 19436 19437, overlap 19431 19441 CGCAAATATCAAAAG TACT-GCTG GTA CAGCTAGTA TTTATGTTATTGTAG TERM 12 19779 - 19793 + G 79 -3.6 -5.56568 | overlap 19781 TGATATGGGAATTAG TTTTGA ATA TCAAGA TTTTTTTGCTCCTGT BDU_11027 19111 - 19992 + | hypothetical protein BDU_11028 20005 - 20625 + | hypothetical protein BDU_11029 20638 - 21516 + | hypothetical protein TERM 13 21799 - 21833 + F 78 -6.8 -4.63218 | gap 1, opp_overlap 21798, overlap 21804 GATTTATGATAAAGG TTAATTGCAATTCAA GTAATA TTGAATTGC-ATTAA TTTTATTGACGAAAA TERM 14 21804 - 21829 + F 81 -9.2 -3.82261 | opp_overlap 21798, overlap 21799 ATGATAAAGGTTAAT TGCAATTCAA GTAATA TTGAATTGCA TTAATTTTATTGACG TERM 15 22031 - 22005 - f 90 -5.9 -5.5454 | gap 1, overlap 22007 22009 CGAAACAAACAAAAA TGGATGGGAGCA TTAA TGCTCCC-TCAA ATCCAAAAAATCATA TERM 16 22029 - 22007 - f 71 -8.5 -2.9173 | gap 1, overlap 22005 22009 AAACAAACAAAAATG GATGGGAGCA TTAA TGCTCCC-TC AAATCCAAAAAATCA BDU_11030 22096 - 22440 + | hypothetical protein BDU_11031 22442 - 22810 + | hypothetical protein TERM 17 22819 - 22832 + T 100 -9.5 -5.19328 | opp_overlap 22819 AAATTAATTATTTAA GCCCC TGAT GGGGC TTTTTATTATCACGT TERM 18 22832 - 22819 - T 78 -9.5 -3.15252 | opp_overlap 22819 AAATTAATTATTTAA GCCCC TGAT GGGGC TTTTTATTATCACGT BDU_11032 23762 - 22842 - | hypothetical protein TERM 19 24000 - 24051 + r 73 -9 -2.78032 | opp_overlap 24001, overlap 23999 23997 24005 TTTAAAGATAAAAAA ATTAGGTCTTTGTTAACACTTCTT AATA AAGACTTATTAACAAAGACCTAAC ATCTTTTAAAACCAC TERM 20 24050 - 24001 - R 100 -14.7 -5.88197 | opp_overlap 24000 23999 23997 24005 TTAAAGATAAAAAAA TTAGGTCTTTGTTAACACTTCTT AATA AAGACTTATTAACAAAGACCTAA CATCTTTTAAAACCA pf49 24877 - 24290 - | PF49 plasmid partition protein TERM 21 24723 - 24733 + g 71 -2.6 -5.45802 | opp_overlap 24723 ATTTCTTTTTTAGAA TTAA TTT TTAA TTTTTCTTTTAAAGA pf32 25642 - 24896 - | PF32 plasmid partition protein ppap1 26166 - 25618 - | plasmid partitioning associated protein-1 ppap2 27288 - 26176 - | plasmid partitioning associated protein-2