TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.727798 %AT, 489346 nt, 3076 terms. Intergenic: 0.817842 %AT, H2T: 72443 nt, 926 terms; T2T: 26428 nt, 772 terms; H2H: 31658 nt, 938 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|27904513|ref|NC_004545.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome (length 615980) TERM 1 670 - 660 - g 70 -8.2 -3.06911 | AGTTAAAGAAGTAGA CGCC TTA GGCG GAATTATGGCAAAAG TERM 2 2271 - 2287 + G 79 -9.5 -3.15544 | opp_overlap 2270 2269 TTCACTTGGACAAGC TTCCAGA ATT TCTGGAA TTACTCCAGCTGCGA gidA 469 - 2349 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3 2349 - 2335 - f 78 -2.2 -6.38039 | opp_overlap 2322 2345, overlap 2322 2345 TATTTAAAAAAAAAA TTATAT AGT ACATAA TTTTTTTTACAAAAT atpB 2668 - 3492 + | F0F1 ATP synthase subunit A atpE 3545 - 3784 + | F0F1 ATP synthase subunit C TERM 4 3835 - 3877 + F 72 -8.3 -3.29495 | opp_overlap 3835 3839 3841, overlap 3834 3842 TTATTAATAAATTTA TATATATTCTTTACGTTA-TA ATT TAGTAACGTAAAG-ATATATA ATTTAATTTTTTTAA TERM 5 3842 - 3871 + F 74 -8.9 -3.08901 | gap 1, opp_overlap 3841 3839 3835, overlap 3835 3834 TAAATTTATATATAT TCTTTACGTTA-TA ATT TAGTAACGTAAAGA TATATAATTTAATTT atpF 3909 - 4379 + | ATP synthase B chain atpH 4392 - 4928 + | ATP synthase delta chain atpA 4942 - 6486 + | F0F1 ATP synthase subunit alpha TERM 6 6573 - 6561 - g 70 -4.9 -4.70319 | GTAGTAAAATGAAAA GTATT AAT AATAC AAAAAAAATTACGAA atpG 6524 - 7399 + | ATP synthase gamma chain atpD 7427 - 8824 + | F0F1 ATP synthase subunit beta TERM 7 9048 - 9060 + G 71 -7.7 -3.5485 | opp_overlap 9048 GGAATTATAGAAGTA CAACC CAC GGTTG TTAGTATTTTAGCTG atpC 8826 - 9263 + | ATP synthase epsilon chain gyrB 11811 - 9397 - | putative DNA gyrase subunit b TERM 8 9614 - 9658 + g 100 -10.5 -5.26918 | opp_overlap 9626 9627, overlap 9626 CGTTGAATTAAAACG TTTTTAAAAGAATTTTGAATT AAT AATTCAAAGTTTTTTTGGAAA TTTTTTATAGAATAT TERM 9 9626 - 9646 + g 89 -6.3 -5.4477 | opp_overlap 9626 9627, overlap 9614 ACGTTTTTAAAAGAA TTTTGAATT AAT AATTCAAAG TTTTTTTGGAAATTT TERM 10 9877 - 9891 + g 95 -5 -6.02345 | ATGTGCTGAATAGTT TCTAGT ACT GCTAGA TTTTTTTTGTAATTG dnaN 13109 - 11994 - | putative DNA polymerase III beta chain TERM 11 12521 - 12537 + g 81 -2.3 -5.93809 | CTCCTTTTCGTGGTA GTATTAT TGA ATTATAC TTTTTTTTATCCAAG TERM 12 13045 - 13061 + g 74 -2.3 -5.5943 | AATATGTGATTTCGT GTTATTA GGT TATTAAC TTTTTTTAGTGATTT dnaA 14487 - 13114 - | chromosomal replication initiator protein DnaA rpmH 14903 - 15046 + | 50S ribosomal protein L34 rnpA 15067 - 15411 + | ribonuclease P protein component yidD 15390 - 15647 + | hypothetical protein TERM 13 16658 - 16671 + G 71 -2.5 -5.40625 | overlap 16668 TTATCTCAACCTTTA TTTAA ATTG TTAAA TTTTTTATATAATAT yidC 15650 - 17260 + | hypothetical protein trmE 17419 - 18798 + | tRNA modification GTPase TrmE TERM 14 19297 - 19287 - g 71 -2.6 -5.4505 | GTGTCCAAGAAAAAA TTTT AAA AAAA GATTGGGAAGAATTT mutH 18848 - 19510 + | DNA mismatch repair protein TERM 15 19740 - 19755 + F 82 -3.4 -6.3578 | ATAGTAATAGTTTTT TTATTT TTTT AAATAA TTTTTTTTTTGCACT groES 19865 - 20158 + | co-chaperonin GroES TERM 16 20840 - 20830 - g 72 -6.8 -4.25056 | opp_overlap 20830 20828 TATTTTATTAATAAA CCAG AAA CTGG TATTGTAGAATTAGA groEL 20209 - 21861 + | chaperonin GroEL yjeK 22966 - 21944 - | putative aminomutase TERM 17 22193 - 22206 + g 72 -6.7 -4.11623 | ATTATCATTGATTCC GCGTA ATAA TACGC TTTGATTTAATAGTG TERM 18 22495 - 22508 + g 76 -3.9 -5.48787 | ATAAAATTACTTCAT TCAAA TCAG TTTGA TTTTTTATATATTGT TERM 19 23150 - 23138 - g 72 -3.5 -5.21709 | opp_overlap 23131 TGTTAGATTAAAAAA TTTAT TAA ATAAA AAATTGATAGACAAG efp 23004 - 23573 + | elongation factor P dnaC 24370 - 23630 - | DNA replication protein DnaC yhhF 25185 - 24595 - | putative methylase TERM 20 25697 - 25677 - g 74 -4 -5.26119 | TTTTTAAAAAGAAAA CATACAAC TCATT GTTGGATG ATATAGAAGAGCAAT ftsY 25316 - 26509 + | FtsY protei rpoH 26669 - 27532 + | RNA polymerase factor sigma-32 glmS 29462 - 27630 - | glucosamine-fructose-6-phosphate aminotransferase isomerizing TERM 21 28774 - 28798 + g 79 -3.7 -5.626 | opp_overlap 28775, overlap 28775 GGTCTATGTACTAAA ATACTGTTTTT GTT AAAAATAGTAA TTTTTTTGTGAGATA TERM 22 28775 - 28797 + g 72 -7.2 -3.96475 | opp_overlap 28775, overlap 28774 GTCTATGTACTAAAA TACTGTTTTT GTT AAAAATAGTA ATTTTTTTGTGAGAT TERM 23 29196 - 29226 + g 73 -8.4 -3.08371 | opp_overlap 29192 GTTTTTAGAGACATG CGGATGAGCATT TTTTTTT AATGCTAATCCG TGTGTTGCCCATCTG glmU 30894 - 29548 - | UDP-N-acetylglucosamine pyrophosphorylase yigL 31189 - 31992 + | putative haloacid dehalogenase-like hydrolase TERM 24 33765 - 33746 - g 75 -7.2 -4.13014 | opp_overlap 33746 33744 33747 33749, overlap 33727 33747 TCTAGATGTGTAAAA CCACCAAT AATT ATTGGTGA TGTTAGTCGTTCCAA TERM 25 33747 - 33764 + G 70 -8.5 -2.51815 | opp_overlap 33727 33746 33747, overlap 33746 33744 33749 CTAGATGTGTAAAAC CACCAAT AATT ATTGGTG ATGTTAGTCGTTCCA TERM 26 33764 - 33747 - g 73 -8.5 -3.07487 | opp_overlap 33747 33746 33744 33749, overlap 33727 33746 CTAGATGTGTAAAAC CACCAAT AATT ATTGGTG ATGTTAGTCGTTCCA metE 32186 - 34456 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 27 34481 - 34529 + T 76 -8.7 -3.52539 | gap 1, opp_overlap 34493, overlap 34493 ATAATTTTTGTGTAT TATATTGTAAAACGATGTTATA AATATA TATAGCATCGTTTT-TAATATA TTATAATTGGCATTA TERM 28 34493 - 34518 + T 79 -7 -4.88711 | opp_overlap 34493, overlap 34481 TATTATATTGTAAAA CGATGTTATA AATATA TATAGCATCG TTTTTAATATATTAT purH 37420 - 35810 - | phosphoribosylaminoimidazolecarboxamide formyltransferase TERM 29 37446 - 37477 + r 95 -12.6 -2.63616 | opp_overlap 37444 37449, overlap 37449 ATTGATTTGTAAATT TAATATAGGAAGTA AGGG TACTTCCTATATTG GTTAGTATTCATAAT TERM 30 37449 - 37474 + r 100 -12.1 -3.4617 | opp_overlap 37444 37449, overlap 37446 GATTTGTAAATTTAA TATAGGAAGTA AGGG TACTTCCTATA TTGGTTAGTATTCAT TERM 31 37474 - 37449 - R 100 -12.1 -3.28001 | opp_overlap 37449 37446, overlap 37444 GATTTGTAAATTTAA TATAGGAAGTA AGGG TACTTCCTATA TTGGTTAGTATTCAT hupA 37771 - 37493 - | DNA-binding protein HU TERM 32 37691 - 37703 + g 79 -3.5 -5.65927 | AATAGCTGTTAATGT TATTT CCA AAATA TTTTTTATTTGAATC TERM 33 38163 - 38136 - R 85 -10.1 -3.57462 | opp_overlap 38136 38140, overlap 38140 TATTTTATTTTTAAA TAAACATTTGC TTTTGT GCAAATGTTTA TTAATATAAAAATAT TERM 34 38136 - 38163 + r 84 -10.1 -3.26649 | opp_overlap 38136 38140, overlap 38140 TATTTTATTTTTAAA TAAACATTTGC TTTTGT GCAAATGTTTA TTAATATAAAAATAT TERM 35 38159 - 38140 - R 71 -6.5 -4.42806 | opp_overlap 38136 38140, overlap 38136 TTATTTTTAAATAAA CATTTGC TTTTGT GCAAATG TTTATTAATATAAAA rpoC 42392 - 38178 - | DNA-directed RNA polymerase subunit beta' TERM 36 38329 - 38343 + g 71 -4.2 -5.14626 | opp_overlap 38329 CCTGCTGGAATTAAA CGTCCT ACA ATGACG TTTTCTTTTAGTCCT TERM 37 39002 - 39022 + g 73 -8.3 -3.39036 | CAGTAATATCTTTAG TTCCTCCAG ATT CTTGAGGAA TTCTAGCTAATGTGT TERM 38 40426 - 40442 + g 100 -8.1 -6.3578 | ACTTCTATTTCAGCT TCAGATA TAA TATCTGA TTTTTTTTTTGGAAT TERM 39 41908 - 41922 + g 79 -3.6 -5.66684 | TTTAAATATTGTTCT TCAGAT AAA ATTTGA TTTTTTTCTAAGTTA rpoB 46512 - 42481 - | DNA-directed RNA polymerase beta chain TERM 40 43268 - 43290 + g 74 -6.4 -4.46112 | GGCATATCTTCTATG GGATTTATTT TAG AAATAACTCC TTTGTTTCCATGACG TERM 41 46691 - 46664 - R 95 -8.5 -5.79588 | overlap 46665 TTAAAATTAAAAAAA GGCTGGTGATT TATAAT AATCACCAGCA AACTAACATATATAT TERM 42 46690 - 46665 - R 100 -12 -4.05313 | overlap 46664 TAAAATTAAAAAAAG GCTGGTGATT TATAAT AATCACCAGC AAACTAACATATATA rplL 47108 - 46740 - | 50S ribosomal protein L7/L12 rplJ 47688 - 47182 - | 50S ribosomal protein L10 TERM 43 47477 - 47491 + g 70 -2.1 -5.5112 | opp_overlap 47466 47464 AATATGTTTTTTAAA CATTC AAATG GAGTG TTTTTTATTCCTAGA rplA 48671 - 47970 - | 50S ribosomal protein L1 TERM 44 48083 - 48118 + g 76 -4.4 -5.28983 | gap 1, opp_overlap 48095, overlap 48088 ATGGTTTAGATTGTT TAAGAGAAGATATTAAA GCA TTTAA-ATTTTCTTTTA TTTTTGTATTTTCAA TERM 45 48088 - 48113 + g 70 -2.1 -5.40873 | gap 1, opp_overlap 48095, overlap 48083 TTAGATTGTTTAAGA GAAGATATTAAA GCA TTTAA-ATTTTC TTTTATTTTTGTATT rplK 49108 - 48668 - | 50S ribosomal protein L11 TERM 46 48743 - 48765 + g 86 -2 -6.28967 | overlap 48747 48749 TTTTGAAATATTATC TATATTTGAC CCG GTCATATCTA TTTTTTTTATTTGTG nusG 49868 - 49323 - | transcription antitermination protein secE 50256 - 49873 - | preprotein translocase SecE subunit TERM 47 50673 - 50689 + r 72 -8.7 -2.62396 | overlap 50675 TTGAACTGGGAACCT CACCCTT ACC GAGGGTG TGCTCTACCAAACTG murB 52399 - 51395 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 48 52402 - 52434 + H 70 -4.4 -5.22312 | gap 1, overlap 52406 52433 AGTAAGTTTTCATTG CATAGTGTTTTAACT TTTT AGTTAAAAAACT-TG TTTTTTAATATCAAT TERM 49 52406 - 52431 + H 73 -6.3 -4.69962 | overlap 52402 AGTTTTCATTGCATA GTGTTTTAACT TTTT AGTTAAAAAAC TTGTTTTTTAATATC metF 52577 - 53464 + | 5,10-methylenetetrahydrofolate reductase TERM 50 53480 - 53538 + F 74 -7.3 -4.18711 | TTTAATTATTTAGAA TTTTTAAAGATTGTAATATTAAATGTG TGCAT TGCGTTTAAGATTATAATTTTTAAAAA TTTAGTTATTATTTT argG 53764 - 54993 + | argininosuccinate synthase TERM 51 55969 - 55958 - g 77 -3 -5.63504 | AATGCCACAAAAAAA GAAT CCTG ATTC ATTAGAATTAATTAG argH 55107 - 56483 + | argininosuccinate lyase yibN 56667 - 57110 + | hypothetical protein cysE 57358 - 58122 + | serine acetyltransferase rpoD 60142 - 58313 - | RNA polymerase sigma factor RpoD TERM 52 58478 - 58464 - G 74 -8.6 -3.20573 | overlap 58462 58469 GTATTCATATCAATA CCGAAT CTC ATTCGG AGAACTTTGGCTTCT TERM 53 58888 - 58900 + g 70 -6.3 -4.11838 | AAAATTTATAACCTC TTCGA TAT TCGAA TTTGTCTACTGCTTT dnaG 62116 - 60380 - | DNA primase TERM 54 60541 - 60521 - G 83 -9.9 -3.24166 | opp_overlap 60521 60520, overlap 60516 AGTTAATGAATCTAA GAAAAAATC TTT GATTTTTTC GTTATGAATCATATG TERM 55 60521 - 60541 + g 78 -9.9 -2.6294 | opp_overlap 60516 60521, overlap 60520 AGTTAATGAATCTAA GAAAAAATC TTT GATTTTTTC GTTATGAATCATATG TERM 56 60763 - 60780 + g 79 -3.5 -5.66868 | opp_overlap 60755 60766, overlap 60764 GTATTAATAATGCAA TTACAAT ACGT ATTGTAG TTTTTTTAATTGGTT TERM 57 62177 - 62152 - R 75 -9.1 -2.82324 | opp_overlap 62152, overlap 62151 AAGTATTTAAAAGAT TTTGACCGTAT TTAA ACACGGCCAAA TAGTTAATTTAAAAA rpsU 62438 - 62223 - | 30S ribosomal protein S21 gcp 62606 - 63622 + | putative O-sialoglycoprotein endopeptidase ribB 64369 - 63734 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 58 63769 - 63780 + g 93 -4.4 -6.02546 | opp_overlap 63758 63757 TAAGGTCACGAATAG TGAC AATG GTCA TTTTTTTTAATTTAG TERM 59 65408 - 65388 - g 78 -9.9 -2.5474 | opp_overlap 65379 65385 65387 65388, overlap 65385 65387 TTGTATTGATAATAT GTATCATAA TTT TTATGATAC CTTTGACATTTTTAT TERM 60 65388 - 65408 + G 80 -9.9 -2.88155 | opp_overlap 65385 65388 65387, overlap 65379 65385 65387 TTGTATTGATAATAT GTATCATAA TTT TTATGATAC CTTTGACATTTTTAT TERM 61 65656 - 65685 + G 81 -3.1 -5.75478 | gap 1, opp_overlap 65665, overlap 65645 65665 TTTTTGAGTGTAATT CATTATCA-ATCTT CAA AAGATATTATAATG TTTTTTTATATAATT cca 64717 - 65976 + | tRNA CCA-pyrophosphorylase bacA 66779 - 65973 - | bacitracin resistance protein crr 67411 - 66905 - | glucose-specific PTS system component ptsI 69150 - 67420 - | phosphoenolpyruvate-protein phosphotransferase TERM 62 67822 - 67811 - G 77 -3 -5.63374 | CCAATACTAAAAAAA TCAA CTTC TTGA GCTAAGTGATGTGCA ptsH 69582 - 69325 - | phosphocarrier protein HPr TERM 63 72764 - 72779 + G 82 -6.2 -5.14163 | opp_overlap 72764 AGATAAGTTTATGAA TTCTTC TAAA GAAGAA TTTTTGTTAATAAAT lig 71142 - 73160 + | DNA ligase TERM 64 73291 - 73275 - f 77 -9.5 -2.76189 | overlap 73272 CAACTGAGCTAACGA CCCAAAA TTA TTTTGGG TGATGACGGTCTCGA TERM 65 73436 - 73446 + F 79 -2.6 -6.28401 | overlap 73442 TATATTTATTTTCGG TTTT TAC AAAA TTTTTTTGTTTTTTA TERM 66 73442 - 73454 + F 72 -4.9 -5.15117 | overlap 73436 TATTTTCGGTTTTTA CAAAA TTT TTTTG TTTTTTAAAGTTTTC gltX 73495 - 74913 + | glutamyl-tRNA synthetase fliE 75492 - 75190 - | flagellar hook-basal body complex protein FliE TERM 67 75396 - 75406 + g 71 -4 -5.10497 | opp_overlap 75396 ATGCATTAGTAAAAT TTTC ATA GAAA TTTTTTGGGTGCGTT TERM 68 76759 - 76749 - g 74 -4 -5.28176 | opp_overlap 76749 CTCATCTACAAAAAA TTCT AAA AGAA ATTTAAGCGATGAAT fliF 75688 - 77355 + | flagellar M-ring protein TERM 69 77624 - 77612 - g 75 -3.4 -5.40072 | TCTCTTTTAAAAAAA GTTC TAGGT GAAC ATCACGCTGTGTTAC fliG 77360 - 78322 + | flagellar motor switch protein FliG fliH 78353 - 79030 + | flagellar assembly protein FliH fliI 79027 - 80391 + | flagellum-specific ATP synthase fliJ 80408 - 80875 + | flagellar FliJ protein TERM 70 81563 - 81579 + G 74 -6.7 -4.27316 | opp_overlap 81563 81562 81557 81576 TTTAAATAATAAAAC TAAATGT ATA ACATTTA TTTTAAATTCAAAAC fliK 80868 - 81938 + | flagellar FliK protein TERM 71 82007 - 82025 + F 73 -6.2 -4.67697 | opp_overlap 82024 AAATTTTAGTGTTTT TATTTTTA GTT TAAAAATA TTTGTTATTTTAAAA TERM 72 82126 - 82116 - g 71 -2.6 -5.50499 | overlap 82120 CTAGAGTTAAAAAAA TTTA TAT TAAA AATAAAATAGATATA TERM 73 82545 - 82524 - g 71 -2.5 -5.42862 | gap 1, opp_overlap 82524 ACATTGTTAAAAAAA TGTT-TAAAA TAA TTTTAGAACA GTATTATTTTTTATG fliM 82082 - 83077 + | flagellar motor switch protein FliM TERM 74 83429 - 83457 + G 93 -11.3 -3.3579 | opp_overlap 83434, overlap 83431 83434 AAATAAATATGGTAT TAGAATTATCAAT ATT ATTGATAATTCTG TATTTAAAAAGCTTT TERM 75 83431 - 83455 + G 95 -11.7 -3.24411 | opp_overlap 83434, overlap 83429 83434 ATAAATATGGTATTA GAATTATCAAT ATT ATTGATAATTC TGTATTTAAAAAGCT TERM 76 83452 - 83434 - g 70 -7.6 -3.42346 | opp_overlap 83431 83429 83434 AATATGGTATTAGAA TTATCAAT ATT ATTGATAA TTCTGTATTTAAAAA TERM 77 83434 - 83452 + G 73 -7.6 -3.76232 | opp_overlap 83434, overlap 83431 83429 AATATGGTATTAGAA TTATCAAT ATT ATTGATAA TTCTGTATTTAAAAA fliN 83070 - 83474 + | flagellar motor switch protein FliN TERM 78 84192 - 84212 + G 70 -6.3 -4.1023 | TATTATGGCGCCTAT TTTTGATAA AAT TTATCAAGA TTCTTATTTACCCTT fliOP 83536 - 84618 + | type III secretion system protein fliQ 84702 - 84974 + | flagellar biosynthetic protein FliQ TERM 79 85088 - 85140 + G 73 -4.5 -5.00884 | AATAGTAAATTTATT GAAAAAAAAATTAAACTGATAATGG CTT TTGTTATTAGTTGGATTTTTTCTTC TTTTTTACCAAAGGT fliR 84974 - 85747 + | flagellar biosynthetic protein FliR TERM 80 86031 - 86069 + T 86 -10.6 -3.5556 | opp_overlap 86037 86048 86055, overlap 86048 86057 TTTAACATTTATATT TTTAAATAGTAAGGAATT TAA AATTCCTTACTAAATAAA TTAATTTAAAATTTG TERM 81 86063 - 86037 - T 100 -14 -3.5944 | opp_overlap 86031 86048 86057, overlap 86048 86055 ATTTATATTTTTAAA TAGTAAGGAATT TAA AATTCCTTACTA AATAAATTAATTTAA rpmG 86307 - 86140 - | 50S ribosomal protein L33 rpmB 86573 - 86349 - | 50S ribosomal protein L28 TERM 82 87001 - 86987 - g 78 -5.8 -4.90471 | ACGTAAAATATAAAA GTAAAA ATA TTTTAC TTACAATTAAAGTAC TERM 83 87161 - 87174 + G 73 -5.3 -4.70159 | opp_overlap 87161 CTTTAAATTTGAAAT CGAAA TTTT TTTCG TATTTTTTTATTTTT ytfN 86752 - 88905 + | RpoD protein TERM 84 89870 - 89889 + T 89 -9.3 -4.20284 | overlap 89868 AAACAATTAAATTTT GCTCTCC GTGTCA GGAGAGC TCTTTTGTTTATTTG TERM 85 89919 - 89943 + T 78 -2.1 -6.34616 | overlap 89920 GTGAAATTTTTCGCA CGCAGAAAGTA TTA TTTTTTCTGCA TTTTTTTTATTTTCC ppa 90425 - 89898 - | inorganic pyrophosphatase TERM 86 91266 - 91288 + G 72 -5.7 -4.55016 | overlap 91277 ACTATGAAAACTTCT GCAATTTTT TCTTC AGAAATTGC TTTTGAATTTTTTAT TERM 87 91277 - 91295 + G 74 -2.5 -5.61689 | overlap 91266 TTCTGCAATTTTTTC TTCAGAA ATTGC TTTTGAA TTTTTTATTAATTTT pmbA 90540 - 91886 + | PmbA protein TERM 88 91933 - 91943 + T 74 -2.6 -6.08563 | TGGGTTTATTTGAGT TTTA TAT TAAA TTTTTTTTATGTATT TERM 89 92171 - 92189 + T 74 -7.4 -4.15106 | TGTTACCAAGTATTC GGTGTGCT TTT ACCACACC TTTTCACCCTTGCTA TERM 90 92259 - 92273 + T 72 -8.6 -2.67958 | overlap 92272 GTGAACTTACGTTCC CCAGAT GTT ATCTGG TACCTTTGCCTCTTG TERM 91 92363 - 92377 + T 79 -5.8 -5.30189 | opp_overlap 92362 TCAATGTTTTAATAT TAATGA ATA TCATTA TTTTTTGATATTGTA yraL 93240 - 92362 - | putative tetrapyrrole methylase fabB 93527 - 94750 + | 3-oxoacyl-[acyl-carrier-protein] synthase I talA 95374 - 96324 + | transaldolase B TERM 92 96592 - 96574 - g 73 -5.4 -4.69622 | ACATAATCCTAAAAA TCCATTAT GGA ATAATAGA GATCGCTTTATTCTT tktB 96422 - 98422 + | transketolase dapE 98589 - 99722 + | succinyl-diaminopimelate desuccinylase dapA 101043 - 100159 - | dihydrodipicolinate synthase aroC 102593 - 101526 - | chorismate synthase TERM 93 102755 - 102777 + H 74 -8.6 -2.99471 | AAAAATGTTTATTTT TTTTAGGAAT AAT ATTCCTAAGA TATGTATAGCAGTAC yb2331 102976 - 103506 + | hypothetical protein TERM 94 103903 - 103879 - f 75 -6 -5.03145 | TAATGGTTTAAAAAA TTTTTAAATT CAAAT AATTTAAAAA AAAATAGGCACCTAT TERM 95 104802 - 104814 + G 77 -7.7 -4.09243 | TATGCATATGGTAAG TAGCG AAA CGCTA TTTTGGGAAACTATG hisG 103996 - 104895 + | ATP phosphoribosyltransferase hisD 104901 - 106208 + | histidinol dehydrogenase hisC 106210 - 107292 + | histidinol-phosphate aminotransferase TERM 96 107619 - 107609 - g 70 -5.4 -4.4715 | TGCCAATGTAGAAAA CCTA ATT TAGG AATGGTTCAGCATTG TERM 97 107804 - 107792 - g 84 -3.4 -5.83226 | AAGTTAACAAAAAAA CATG ATAGA CATG CCAAAGTAGTTCGTA hisB 107294 - 108367 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 108368 - 108958 + | amidotransferase HisH hisA 108962 - 109687 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisF 109681 - 110457 + | imidazole glycerol phosphate synthase subunit HisF hisI 110451 - 111071 + | phosphoribosyl-AMP cyclohydrolase gnd 111225 - 112631 + | 6-phosphogluconate dehydrogenase TERM 98 112634 - 112651 + F 72 -4.3 -5.33331 | TTGGTATTCTTAATT TAAAAAT TTTT ATTTTTA TTTTTATTATGTTTA dcd 112936 - 113517 + | deoxycytidine triphosphate deaminase TERM 99 114790 - 114802 + G 74 -6.3 -4.48877 | TAGTAAATTTAGCTT CTAGA GTG TCTAG TTTTATAAATATTTA metG 113619 - 115256 + | methionyl-tRNA synthetase TERM 100 115277 - 115300 + T 83 -6.2 -5.41143 | CGAATTATTATTTAT TTTAAAACGT ATTT ATGTTTTAAA TTTTTTTAGACAATA mesJ 116622 - 115306 - | putative cell cycle protein MesJ TERM 101 116491 - 116509 + g 74 -4.7 -5.11718 | ATTAATATGAATAGC TCTAAAT GTAAA ATTTAGA TTATTTTTTTTTAGT norM 118216 - 116861 - | multidrug resistance protein NorM TERM 102 117362 - 117352 - G 76 -4 -5.46706 | opp_overlap 117352 ATGGCAAAATAAAAA TAGT AGA ACTA ATATTTAAGGCAATT TERM 103 118679 - 118701 + G 78 -4.3 -5.38047 | gap 1, overlap 118680 TGGATGTTGTTTAAC T-GTTCGAAA TATT TTTCGAACTA TTTTTTGTGTAGATA TERM 104 118680 - 118699 + G 88 -9.4 -4.31943 | overlap 118679 GGATGTTGTTTAACT GTTCGAAA TATT TTTCGAAC TATTTTTTGTGTAGA TERM 105 119007 - 118991 - g 77 -5.1 -5.28176 | opp_overlap 118994, overlap 118994 TGGATCTATAAAAAA TAACGCA TTT TGCGTTT TTTTAATTCCAGAAA TERM 106 118994 - 119004 + G 100 -6.8 -5.63103 | opp_overlap 118991 118994 ATCTATAAAAAATAA CGCA TTT TGCG TTTTTTTAATTCCAG TERM 107 119004 - 118994 - g 79 -6.8 -4.73105 | opp_overlap 118994, overlap 118991 ATCTATAAAAAATAA CGCA TTT TGCG TTTTTTTAATTCCAG ribE 118530 - 119168 + | riboflavin synthase subunit alpha rnfA 119467 - 120051 + | electron transport complex protein RnfA TERM 108 120038 - 120054 + F 77 -5.3 -5.39721 | opp_overlap 120041 TGGGATTTGATGGAT TAATTAA ATT TTAATTA TTTTTTATATGATAA rnfB 120063 - 120572 + | electron transport complex protein RnfB rnfC 120590 - 122107 + | electron transport complex protein RnfC rnfD 122275 - 123339 + | electron transport complex protein RnfD rnfG 123323 - 123973 + | electron transport complex protein RnfG ydgQ 123966 - 124691 + | SoxR-reducing system protein RsxE nth 124654 - 125301 + | endonuclease III TERM 109 125469 - 125445 - f 74 -7.3 -4.22338 | opp_overlap 125445 125444 125447 125451 ATTACAATGTTAAAA TATGATCATAA TTT TTATGTTCATA ATTATAAATAGAAAT TERM 110 126524 - 126542 + G 78 -9.6 -3.06315 | opp_overlap 126522 CTAACTTAGTACACG GTTCGAAC GAG GTTCGAGC TATTCAGCGTATTAC tyrS 125590 - 126864 + | tyrosyl-tRNA synthetase ydiC 127317 - 126931 - | hypothetical protein TERM 111 127169 - 127179 + g 78 -2.6 -5.79635 | GCGCATCCTGTTTTT TTAA GTC TTAA TTTTATTTTTTTTTT TERM 112 127201 - 127217 + g 84 -6.7 -5.0666 | TTTTTTTTTATTTTT TTTTGTT AAA AACAAAA TTTGTTTTTTGGCTG TERM 113 127537 - 127547 + H 70 -4 -5.38326 | ATTAAATATTTTATA TGTT AAT AACA TTTTTATTTGATTAA TERM 114 127883 - 127897 + G 77 -2.1 -5.82388 | ATTATTTCAAGTTTA TGGAT TATGC GTCCA TTTTTTTTAGGATTT yb1688 127799 - 128905 + | putative inner membrane protein TERM 115 130205 - 130219 + G 71 -7.2 -3.79519 | opp_overlap 130207 ATACTTACACGAATT TACTCT TTC AGAGTA TTTGATGATAGACTT aroH 129441 - 130487 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 116 130497 - 130525 + F 100 -14.1 -4.50943 | opp_overlap 130501 130503, overlap 130499 TTTTAATTTTTTTTA TAGATACCAGTTA GAG TAACTGGTATCTG TTTTGTAGATTATTA TERM 117 130499 - 130523 + F 100 -14.5 -3.84906 | opp_overlap 130501 130503, overlap 130497 TTAATTTTTTTTATA GATACCAGTTA GAG TAACTGGTATC TGTTTTGTAGATTAT TERM 118 130521 - 130501 - f 88 -11.3 -2.87463 | opp_overlap 130499 130497, overlap 130503 AATTTTTTTTATAGA TACCAGTTA GAG TAACTGGTA TCTGTTTTGTAGATT TERM 119 130519 - 130503 - f 80 -9.5 -2.98823 | opp_overlap 130499 130497, overlap 130501 TTTTTTTTATAGATA CCAGTTA GAG TAACTGG TATCTGTTTTGTAGA TERM 120 131066 - 131056 - g 71 -2.6 -5.52023 | ATGATTAATAAAAAA TATA AGA TATA TACAAAAACGTTTTC thrS 130663 - 132594 + | threonyl-tRNA synthetase infC 132598 - 133143 + | translation initiation factor IF-3 rpmI 133189 - 133386 + | 50S ribosomal protein L35 rplT 133429 - 133809 + | 50S ribosomal protein L20 TERM 121 133864 - 133880 + F 100 -12.3 -5.13473 | ATAGTTTTTTTTTAG GCCTCCA TAT TGGAGGC TTTTTTCAATATAAT pheS 133982 - 134968 + | phenylalanyl-tRNA synthetase alpha chain TERM 122 135262 - 135251 - g 73 -4.4 -5.07486 | CACGTGGAACAAAAA TAGC TATA GCTA CTCAAGATTCTAAAT TERM 123 136581 - 136555 - g 80 -5.2 -5.19879 | opp_overlap 136549 136558, overlap 136557 136558 TCTCAAATACAAAAA TATTTGTTTCCT AAG AGGAAACAATTT TTTTTATTAAATCCT TERM 124 136579 - 136557 - g 77 -7.8 -4.22132 | opp_overlap 136549 136558, overlap 136555 136558 TCAAATACAAAAATA TTTGTTTCCT AAG AGGAAACAAT TTTTTTTATTAAATC TERM 125 136558 - 136578 + G 100 -11.3 -6.11243 | opp_overlap 136557 136555 136558, overlap 136549 CAAATACAAAAATAT TTGTTTCCT AAG AGGAAACAA TTTTTTTTATTAAAT TERM 126 136578 - 136558 - g 91 -11.3 -3.11652 | opp_overlap 136549 136558, overlap 136557 136555 CAAATACAAAAATAT TTGTTTCCT AAG AGGAAACAA TTTTTTTTATTAAAT pheT 134983 - 137391 + | phenylalanyl-tRNA synthetase beta chain TERM 127 137690 - 137705 + G 78 -2.6 -5.86976 | CTTATATTTATGTTA TTGGTA TTTT TATCAA TTTTTTATTTTATGA yajC 137603 - 137950 + | putative membrane protein YajC glyS 140228 - 138135 - | glycyl-tRNA synthetase beta chain (glycine--tRNA ligase beta chain) (GlyRS) TERM 128 139593 - 139617 + g 78 -9.4 -3.14051 | overlap 139591 ATCTGCAATTACCTT TCCTGAGTTT AGTAA AAGCTCAGGA TATTGATAAGCGTGA glyQ 141176 - 140274 - | glycyl-tRNA synthetase subunit alpha TERM 129 140622 - 140606 - G 74 -8.1 -3.60296 | opp_overlap 140605 140606 140609, overlap 140609 TATCTTGATTCCAAA TAACATC ATA GATGTTA GATTTATTTTGTATA TERM 130 141138 - 141148 + g 76 -4 -5.54079 | TTCATAGAATGTTGT TGAA GTG TTCA TTTTTTCCTTTTTAA nfo 141478 - 142314 + | endonuclease IV rplY 142440 - 142733 + | 50S ribosomal protein L25 yabI 143744 - 142971 - | DedA family membrane protein ksgA 144271 - 145053 + | dimethyladenosine transferase apaH 145169 - 146005 + | diadenosine tetraphosphatase folA 146505 - 146011 - | dihydrofolate reductase TERM 131 146275 - 146293 + g 74 -2.5 -5.72118 | TTTACTAATAGAATT TACAAAT AAAAC GTTTGTA TTTTTTATATTTTTT carB 149820 - 146590 - | carbamoyl phosphate synthetase large chain TERM 132 147242 - 147255 + g 72 -6.7 -4.25104 | opp_overlap 147241, overlap 147249 147252 GCAATTTTAGCTAAG GCTAC ACCA GTAGC TTTTGATACAAAGGG carA 151022 - 149829 - | carbamoyl phosphate synthase small subunit TERM 133 150443 - 150453 + g 82 -2.6 -6.11392 | TTAATTTAGCGTTTG TAAT ATT ATTA TTTTTTTGTTTATTT dapB 151979 - 151161 - | dihydrodipicolinate reductase TERM 134 151467 - 151489 + g 84 -3.5 -5.89921 | gap 1, opp_overlap 151470, overlap 151468 TTTTCCTATTTCTAA T-GATGTACC TGAA GGTGCATCTA TTTTTTTGTTATGGT TERM 135 151468 - 151487 + g 83 -8.6 -4.57921 | opp_overlap 151470, overlap 151467 TTTCCTATTTCTAAT GATGTACC TGAA GGTGCATC TATTTTTTTGTTATG lytB 152939 - 152274 - | LytB protein TERM 136 152664 - 152674 + g 87 -2.6 -6.26417 | TGGACAAGTTGCATC TATT ATA AATA TTTTTTTTTCTAATG lspA 153486 - 152995 - | lipoprotein signal peptidase ileS 156305 - 153486 - | isoleucyl-tRNA synthetase TERM 137 155467 - 155477 + g 73 -5.4 -4.65168 | opp_overlap 155467 ATTTTATTCATAGTA TCAG GTA CTGA TTTTTCGGATATAAT TERM 138 156833 - 156849 + H 80 -4.5 -5.9873 | opp_overlap 156833, overlap 156826 TTAGTATATCAATAT TGTTGAA TAT TTTAACA TTTTTTTTATGATGG rpsT 156975 - 157235 + | 30S ribosomal protein S20 TERM 139 157307 - 157274 - T 72 -8.3 -3.18274 | opp_overlap 157275 TGTATTTTAATCTAA TTTGCTTCCATATAA CTTT TTTTATGGAAGCAAT TTGTAGAATTCATCT TERM 140 157275 - 157306 + T 95 -11.8 -3.93236 | opp_overlap 157274 GTATTTTAATCTAAT TTGCTTCCATATAA CTTT TTTTATGGAAGCAA TTTGTAGAATTCATC dnaJ 158468 - 157317 - | chaperone protein DnaJ TERM 141 158104 - 158123 + g 75 -3.5 -5.46706 | opp_overlap 158104, overlap 158098 158107 ATGTCATAGCGTAAA TCTGAGC CTTGTC GCTCTGA TTTTTGTTTTCGAGT TERM 142 158271 - 158257 - G 75 -8.6 -3.47349 | opp_overlap 158249, overlap 158250 TGTTCAAATGCAGAA TGACCA TAT TGGTCA TATGCAGTACGTTTT TERM 143 158492 - 158532 + r 75 -6.4 -4.90455 | gap 1, opp_overlap 158499, overlap 158497 158499 CCTGACCGTGCATGT TATATCACGAGCATAATAT TAAG AT-TTATGCTCGTGTGATA TTTTTGTACATATCT TERM 144 158497 - 158527 + r 86 -10.7 -3.05877 | gap 1, opp_overlap 158499, overlap 158492 158499 CCGTGCATGTTATAT CACGAGCATAATAT TAAG AT-TTATGCTCGTG TGATATTTTTGTACA dnaK 160506 - 158590 - | chaperone protein DnaK TERM 145 159149 - 159167 + g 73 -3.2 -5.38958 | TTAAATTGTCCTAAA GATTTATT ATC GATAGATC TTTTTCTTTCTCCCT TERM 146 159681 - 159695 + g 70 -2.9 -5.2197 | CATCTGTTTGTTGTG TAGAA GATAA TTCTA TTTTTGCTTTTTCTG TERM 147 160804 - 160817 + G 82 -4.5 -5.63857 | AGTAGTGTTATTGCA GCTCA GTAT TGGGC TTTTTTTACATTTTT nuoA 160780 - 161178 + | NADH dehydrogenase I chain A nuoB 161204 - 161872 + | NADH dehydrogenase subunit B nuoCD 161977 - 163770 + | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 148 164229 - 164246 + G 71 -7.1 -3.8372 | opp_overlap 164232, overlap 164232 ATCTTTATTCTAATG TAACTGA GTAT TCAGTTA TTGTATTATTGGAAT nuoE 163757 - 164272 + | NADH dehydrogenase subunit E nuoF 164269 - 165603 + | NADH dehydrogenase I chain F TERM 149 167677 - 167667 - g 84 -4 -5.80951 | AGTGAAAATAAAAAA TCTA TAT TAGA AAGTTGGAAATGGCT TERM 150 168338 - 168326 - g 72 -3.5 -5.30616 | overlap 168320 TTATTTAAATAAAAA TTTTA GTA TAAAA GTACAATTGTCTAAA nuoG 165732 - 168455 + | NADH dehydrogenase subunit G nuoH 168452 - 169420 + | NADH dehydrogenase subunit H nuoI 169443 - 169985 + | NADH dehydrogenase subunit I TERM 151 170109 - 170121 + G 82 -2.7 -5.96894 | ACTTTCATTTGTATT TACAT CTT GTGTA TTTTTTTCTTTAGGT nuoJ 169996 - 170490 + | NADH dehydrogenase I chain J nuoK 170548 - 170850 + | NADH dehydrogenase I chain K TERM 152 172160 - 172178 + G 74 -9 -2.8001 | AATGATTTTTTTAGT TTTTTGTG GAG CACAAAAA TATCGTGCGCATTAT nuoL 170847 - 172712 + | NADH dehydrogenase I chain L TERM 153 172850 - 172864 + G 74 -4.2 -5.28414 | ATGTTAGTTTCAATT CCCTTT TTT GGAGGG TTTTTGTGTTTATTA TERM 154 173321 - 173333 + G 72 -3.5 -5.32882 | AATGATAGGAAGTTT TATTA TAA TAATA TTTTTTCTGCTAATA TERM 155 173339 - 173369 + G 81 -8.5 -4.16443 | overlap 173347 TATAATAATATTTTT TCTGCTAATAAAT TTTTT ATTTATTCGCAGA TTTCTGGTTTAGTGT TERM 156 174076 - 174098 + G 77 -6.4 -4.80289 | overlap 174067 TTTTATGGGTTGTTT TAACTCTCAT TTA ATGATAGTTA TTTTATCTATTTTCT TERM 157 174281 - 174267 - g 71 -7.2 -3.82084 | opp_overlap 174261 TTTTAATATTAATAA TTGGAT TAT ATCCAA ACATTATTATAGACG nuoM 172823 - 174349 + | NADH dehydrogenase subunit 4 TERM 158 174976 - 174986 + G 71 -2.6 -5.45813 | opp_overlap 174943 174942 174969, overlap 174969 TACAAAATCATTTCA TAAT GCT ATTA TTTTGTTTTTTGGTG nuoN 174371 - 175855 + | NADH dehydrogenase subunit 2 ygjT 175946 - 176911 + | putative transport protein folC 176994 - 178274 + | folylpolyglutamate synthase TERM 159 178476 - 178486 + G 76 -4 -5.41143 | opp_overlap 178476, overlap 178482 TATATTTTCTACATA TGTT CGT AACA TTTTTTTAAAAAATA cvpA 178315 - 178800 + | colicin V production-like protein prsA 179929 - 178982 - | ribose-phosphate pyrophosphokinase TERM 160 182582 - 182571 - g 77 -2.2 -5.86332 | TCAACGTAAAAAAAA CGCT ATTC AACG ACGTGATCTATTAGG prfA 181702 - 182790 + | peptide chain release factor 1 hemK 182787 - 183620 + | hypothetical protein ychA 183795 - 184604 + | putative transcriptional regulator TERM 161 185351 - 185341 - g 71 -4 -5.09204 | ATATTTTAACAAAAA TTCT AAA AGAA GAATCAAAAATTTTT ackA 185121 - 186323 + | acetate kinase TERM 162 187617 - 187597 - g 79 -6.9 -4.79667 | overlap 187599 AAAATTTATGAAAAA TATCCTTCT TCC AGAAGGATG TGAACTTAGAATAAT TERM 163 187615 - 187599 - g 87 -9.5 -3.9993 | overlap 187597 AATTTATGAAAAATA TCCTTCT TCC AGAAGGA TGTGAACTTAGAATA pta 186377 - 188524 + | phosphate acetyltransferase yfaE 188878 - 188615 - | putative iron-sulphur binding protein nrdB 190009 - 188879 - | ribonucleotide-diphosphate reductase subunit beta nrdA 192359 - 190074 - | ribonucleotide-diphosphate reductase subunit alpha TERM 164 192352 - 192363 + g 73 -3 -5.49729 | overlap 192341 192336 GTAACAAATAGCATT TGAT TCAT ATCA TTTTTTTACCTAATT gyrA 195177 - 192634 - | DNA gyrase subunit A TERM 165 192814 - 192838 + g 81 -2.9 -5.89827 | opp_overlap 192814, overlap 192816 ATCTTGATTTACAAC TTGCATTGT TCCAATC ACAATGCCA TTTTTTTTAGTAATT TERM 166 193964 - 193980 + g 84 -5.9 -5.29385 | AATTTATTTTTAGCT TCTTCTA ATG TGGAAGA TTTTTTAATTAAATT yba2 195718 - 196557 + | hypothetical protein ahpC 197315 - 196716 - | peroxiredoxin 2 TERM 167 197628 - 197608 - g 95 -2.7 -6.67014 | opp_overlap 197614 AATGAAAAAAAAAAA TATTATTTT ATT AATATAATA AATCATCTTTTTTTT TERM 168 197662 - 197631 - g 93 -9.8 -4.4768 | gap 1, opp_overlap 197631 TATTAATATAATAAA TCATCTTTTTTTTGA ACG TCAAAAAA-AGATGA TTTTCCCGCCTAAAG TERM 169 197631 - 197662 + G 91 -9.8 -4.09685 | gap 1, opp_overlap 197631 TATTAATATAATAAA TCATCTTTTTTTTGA ACG TCAAAAAA-AGATGA TTTTCCCGCCTAAAG ung 197551 - 198225 + | uracil-DNA glycosylase grpE 198890 - 198306 - | GrpE protein 2 ppnK 199004 - 199882 + | putative inorganic polyphosphate/ATP-NAD kinase ydhD 200435 - 200761 + | thioredoxin-like protein 2 TERM 170 200849 - 200872 + T 100 -13.2 -4.09739 | TTATTGTTCGTGTAT CATTGGGTGG CCAT CCGCCCAATG TTTTCCAGCGATTAA rnt 201479 - 200826 - | ribonuclease T TERM 171 201127 - 201113 - G 71 -4.3 -4.95876 | opp_overlap 201113 201115 AATTATAATCAAAAA TAGCA TTATG TGCTA CTATTATACTTTTAG TERM 172 202232 - 202218 - g 70 -2.9 -5.28983 | opp_overlap 202218 TTTAAAATATAAAAA TAATC GTTCG GATTA TGTTAATGCTTTTTG sodA 201679 - 202305 + | superoxide dismutase pth 202401 - 203024 + | peptidyl-tRNA hydrolase ychF 203069 - 204160 + | translation-associated GTPase TERM 173 204158 - 204189 + T 84 -6.9 -5.252 | opp_overlap 204158, overlap 204188 GTTTTGTATAATGTA TAGAAATTGTTTT TAATTT AAAATAATTTCTA TTTTTTATAAAAATA TERM 174 204235 - 204210 - T 75 -9.2 -2.81519 | opp_overlap 204209 204208 204212, overlap 204214 204216 204218 TATAAAAATAATTTA TATAGAGAGA GCGTTT TCTCTCTATA GGTTTAGATTATTTT thrC 205536 - 204244 - | threonine synthase TERM 175 204501 - 204512 + g 85 -3 -6.09888 | ATCCTAAAAACGCTA GTTT TTTT AAAC TTTTTTTTGTTAAGA thrB 206469 - 205537 - | homoserine kinase TERM 176 205621 - 205634 + g 91 -6.7 -5.42259 | GAGATAATAATTAGT TAGCC ATGT GGCTA TTTTTTTAGCAGTAA thrA 208939 - 206489 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 177 208621 - 208631 + g 70 -3.2 -5.33848 | GTAATAAATTTATTC CTTG AAG CAGG TTTTTTAATTCTAGT TERM 178 208996 - 208973 - R 93 -8.9 -5.22312 | opp_overlap 208973 ATTTATATCAAAAAA GCTCACACT AATTAA AGTGCGAGC TTTTGACACCTTGTT TERM 179 208973 - 208996 + r 70 -6.7 -4.12599 | opp_overlap 208973 ATTTATATCAAAAAA GCTCACACT AATTAA AGTGCGAGC TTTTGACACCTTGTT TERM 180 209633 - 209606 - R 90 -7.8 -5.5604 | gap 1, opp_overlap 209606 209612 TTAACTAACAAAAAA GTGAAACGGGGAA TAG TTTCCCGTT-CAC TAAATTAAACAATAT TERM 181 209606 - 209633 + r 81 -10 -2.53015 | gap 1, opp_overlap 209606, overlap 209612 TTAACTAACAAAAAA GTGAAACGGGGAA TAG TTTCCCG-TTCAC TAAATTAAACAATAT TERM 182 209612 - 209628 + r 74 -8.7 -3.09933 | opp_overlap 209606, overlap 209606 AACAAAAAAGTGAAA CGGGGAA TAG TTTCCCG TTCACTAAATTAAAC dksA 210112 - 209657 - | DnaK suppressor protein TERM 183 209942 - 209962 + g 73 -7.7 -3.80855 | overlap 209938 TATATTTAATCTTGT TTGAGAAAT ATC GTTTCTCAA TTGATTTTTCCAAGC TERM 184 210403 - 210415 + H 70 -3.5 -5.59962 | TAATTTTAATATTAG TTTTT AAT AAAAA TTTTTGTTTATTTTA truA 210481 - 211275 + | tRNA pseudouridine synthase A TERM 185 213004 - 213023 + G 80 -8 -4.25056 | opp_overlap 212994 213003 213004 GAAAATTGTGGAAAC CTCAAAAT AATA ATTTTGAG TTTGTTGGTAAGGTC mrcB 211524 - 213749 + | penicillin-binding protein 1b TERM 186 215294 - 215270 - g 74 -8.6 -3.20494 | overlap 215268 ATGGAAGGACGAAGA TGGTCTGATG GTTTG CATCAGGCCA TAGAAGCAAAAGAAG secA 214226 - 216778 + | preprotein translocase subunit SecA guaC 217697 - 218752 + | guanosine 5'-monophosphate oxidoreductase TERM 187 219292 - 219311 + G 73 -8 -3.34984 | opp_overlap 219291, overlap 219291 CTGTTAAAAAATATG TACCTTAT AAAA ATAAGGTA GTTTTTAAAAAATGT TERM 188 219727 - 219712 - g 71 -7.6 -3.53031 | opp_overlap 219712 219711 CTCATCCTAAATTAA TGCCAA ATTT TTGGCA ATTTCCAACAGTATC aceE 219162 - 221825 + | pyruvate dehydrogenase subunit E1 aceF 221836 - 223086 + | dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex lpdA 223234 - 224661 + | dihydrolipoamide dehydrogenase pfs 225491 - 224733 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase TERM 189 224863 - 224888 + g 75 -7.7 -3.99678 | overlap 224867 AAATTGTCAGCAGCG TTGATATCCGA AGAA TCGGATATTGA TTTAATTATCAAAAT TERM 190 224867 - 224884 + g 76 -8.5 -3.63655 | overlap 224863 TGTCAGCAGCGTTGA TATCCGA AGAA TCGGATA TTGATTTAATTATCA TERM 191 225027 - 225039 + g 95 -6.3 -5.69023 | TATAAATATATCTCC GCTAA TCA TTAGC TTTTTTTGGTATTTT TERM 192 225392 - 225402 + g 71 -2.6 -5.46129 | overlap 225380 TATTAGATATTTTAT TTAT TTT ATAA TTTTTTAGTTTGTTA yadR 225877 - 225530 - | HesB/YadR/YfhF family protein ftsZ 227140 - 225983 - | cell division protein FtsZ ftsA 228438 - 227173 - | cell division protein FtsA ddlB 229769 - 228840 - | D-alanine-D-alanine ligase TERM 193 229375 - 229385 + g 71 -2.6 -5.5074 | opp_overlap 229374 229375, overlap 229374 229380 ATATTTTTTTTAAAT TTTT GTA AAAA TTTTTTATTGAATTC murC 231231 - 229771 - | UDP-N-acetylmuramate-alanine ligase TERM 194 229920 - 229933 + g 84 -3.9 -5.89827 | CTAAAATTAATGTTA CAAAA TTTT TTTTG TTTTTTTTGATCGTT murG 232330 - 231269 - | UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferase ftsW 233469 - 232327 - | cell division protein FtsW murD 234852 - 233524 - | UDP-N-acetylmuramoylalanine-D-glutamate ligase mraY 235871 - 234849 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 237320 - 235938 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D- alanyl ligase TERM 195 236485 - 236509 + g 72 -6.5 -4.35524 | overlap 236449 AGTGGTAGGGTAACA TATATTTCTCC ATT GGGGGAATGTA TTTTAAATTTCGACC TERM 196 236573 - 236590 + g 70 -2.1 -5.49569 | overlap 236570 236577 TAGTACTATTTTTTT TTATTGA AAAA TTAATAA TTTTTTGTGTTAATA TERM 197 237329 - 237339 + r 72 -2.6 -6.04419 | overlap 237334 AAATCATAGTTTTTT TTAT TTA ATAA TTTTTTTATTATTTT murE 238833 - 237307 - | UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase ftsI 240604 - 238874 - | peptidoglycan synthetase FtsI TERM 198 239194 - 239231 + g 73 -4.4 -5.17576 | opp_overlap 239197 TTATAACAGTTTTAA TGATTTTTTTAGAAAA AACTTG TTTGCTAAAAATATCA TTTTTTAAATTAGTG TERM 199 240013 - 240024 + g 70 -3 -5.33785 | opp_overlap 240013 GTTTTCCCATTAACA GTTT ATTA AAAC TTTTTTCTACTCCTT TERM 200 240411 - 240441 + g 100 -10.6 -4.70453 | opp_overlap 240410 240411 240415, overlap 240412 CCACGTTGATTAAAT TCAATTTGCGTTCT TAA AGAACGTAAATTGC TTTTATATATTAATT TERM 201 240441 - 240411 - G 71 -8.4 -2.84051 | opp_overlap 240411 240412, overlap 240410 240415 CCACGTTGATTAAAT TCAATTTGCGTTCT TAA AGAACGTAAATTGC TTTTATATATTAATT TERM 202 240412 - 240440 + g 100 -14.1 -3.40645 | opp_overlap 240411 240410 240415, overlap 240411 CACGTTGATTAAATT CAATTTGCGTTCT TAA AGAACGTAAATTG CTTTTATATATTAAT ftsL 240938 - 240687 - | cell division protein FtsL-like protein yabC 241878 - 240931 - | hypothetical protein ilvH 242451 - 241972 - | acetolactate synthase small subunit ilvI 244178 - 242448 - | acetolactate synthase large subunit apbE 245494 - 244469 - | putative thiamine biosynthesis protein ApbE precursor htrA 245995 - 247392 + | serine protease dapD 248347 - 247523 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase map 249225 - 248425 - | methionine aminopeptidase TERM 203 249044 - 249066 + g 70 -5.6 -4.26393 | opp_overlap 249022 249047, overlap 249047 AATCCTTGATATCCT AAACATGCAG GTT TTGCATGTTG TTTATATGTTATGTA TERM 204 249047 - 249063 + g 75 -7.3 -4.22858 | opp_overlap 249047, overlap 249044 CCTTGATATCCTAAA CATGCAG GTT TTGCATG TTGTTTATATGTTAT TERM 205 249186 - 249202 + g 70 -3.1 -5.252 | opp_overlap 249201, overlap 249188 CTACTAATCGCATTT TATTAAT TTC ATTAATG TTTTTTATAAAAATA TERM 206 249766 - 249754 - g 82 -2.7 -5.95166 | TCGAATTAAAAAAAA TTTCA TTG CGAAA AGGTAAGATTTTATT rpsB 249579 - 250265 + | 30S ribosomal protein S2 TERM 207 250989 - 250973 - g 71 -3.8 -5.16572 | overlap 250980 250983 ATGCAATCTAAAAAA TCTAAA CCTAT TTTAGA AAAAATAATTAAAGG tsf 250352 - 251152 + | elongation factor Ts TERM 208 251173 - 251187 + F 74 -8.5 -3.7212 | opp_overlap 251173 TTATTGATTTGAGAA CCGCC ATAAG GGCGG TTGTATTAAATATTT TERM 209 251187 - 251173 - f 72 -8.5 -3.33492 | opp_overlap 251173 TTATTGATTTGAGAA CCGCC ATAAG GGCGG TTGTATTAAATATTT pyrH 251299 - 252027 + | uridylate kinase TERM 210 252126 - 252142 + F 76 -6.7 -4.60255 | TAATTAAAATTTATG TTTACAT TTT ATGTAAA TTTTTAGAAGGTTAT frr 252164 - 252715 + | ribosome recycling factor TERM 211 254247 - 254257 + G 78 -2.6 -5.75599 | opp_overlap 254247 GGGAAATAAAAGTAT TAAT GGA ATTA TTTTTTTATGCTTTA uppS 253985 - 254740 + | undecaprenyl pyrophosphate synthetase TERM 212 255322 - 255307 - g 72 -4.7 -4.84761 | opp_overlap 255286 255301 255300 255307 ACATTTTTATAAAAA TCCAG TATTTC CTGGA GTTTTAATTTTAGAA fabZ 255146 - 255598 + | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase TERM 213 256379 - 256389 + G 71 -2.6 -5.38549 | opp_overlap 256379 TCTTTTTATAATCGA TTTT TTG AAAA TTTTTATTATTTAGA TERM 214 258479 - 258463 - g 70 -2.3 -5.5074 | opp_overlap 258465, overlap 258465 TAACGCAAGAAAAAA TAGAAAA CGA TTTTCTG AATTGTTTGATTTAT dnaE 255887 - 259120 + | DNA polymerase III alpha subunit TERM 215 259188 - 259205 + T 72 -4.3 -5.45726 | opp_overlap 259200 ATTAAATATTCAATT TTAAAAA GATA TTTTTAA TTTTTTTAAAATATA proS 260989 - 259265 - | prolyl-tRNA synthetase TERM 216 261106 - 261120 + H 72 -5.8 -4.78839 | opp_overlap 261105 261106 261108, overlap 261101 TTTAGTAATTTAAAT TATTAC GTA GTAATA TTTTATTGTGACATT TERM 217 261430 - 261420 - g 73 -5.4 -4.68103 | TGAATCTGAAGAAAA GACT GAA AGTC CGACTAGTTATCGAT TERM 218 261670 - 261682 + G 84 -3.5 -5.92337 | overlap 261674 GATAATCTTATTTCA TTATT AGG AATAA TTTTTTTTCCTATGT TERM 219 261797 - 261775 - g 72 -6.4 -4.29106 | TTTGATATTAATAAA TTAAATCCAA TAT TAGGATTTAA GAATGTGTTTTCTAT TERM 220 261948 - 261961 + G 100 -5.3 -5.9667 | opp_overlap 261948 TTATATATTAAATTA TAGTG TACG CACTA TTTTTTTGTGTTTTT flhB 261394 - 262542 + | flagellar biosynthetic protein FlhB flhA 262535 - 264643 + | flagellar biosynthesis protein FlhA argS 266550 - 264814 - | arginyl-tRNA synthetase TERM 221 268452 - 268469 + r 77 -9.1 -3.07291 | opp_overlap 268452 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT gloB 269499 - 268750 - | putative hydroxyacylglutathione hydrolase rnhA 270014 - 269553 - | ribonuclease HI TERM 222 270677 - 270667 - g 70 -5.4 -4.57275 | CAAAAAAATGCAAAA CTAG ATT CTAG AGTTCCTTTTCGATC dnaQ 270064 - 270801 + | putative DNA polymerase III epsilon chain TERM 223 271002 - 271048 + F 100 -12 -4.67234 | opp_overlap 271008, overlap 271008 271035 TTTTAAAACGTTTAA CAAAAATTTTAAAACAAAAGTC TTA GTTTTTTGTTTTAAAATTTTAG TTTTTAAAATTGAGT TERM 224 271042 - 271008 - f 82 -7.4 -5.08088 | opp_overlap 271002 271008 271035 AACGTTTAACAAAAA TTTTAAAACAAAAGTC TTA GTTTTTTGTTTTAAAA TTTTAGTTTTTAAAA TERM 225 271008 - 271042 + F 93 -9.6 -4.77757 | opp_overlap 271008, overlap 271002 271035 AACGTTTAACAAAAA TTTTAAAACAAAAGTC TTA GTTTTTTGTTTTAAAA TTTTAGTTTTTAAAA gpt 271229 - 271690 + | xanthine-guanine phosphoribosyltransferase grpE1 271815 - 272411 + | GrpE protein yfjF 272685 - 272425 - | hypothetical protein smpB 272836 - 273312 + | SsrA-binding protein yfhC 273380 - 273868 + | putative deaminase acpS 274319 - 273933 - | holo-[acyl-carrier protein] synthase era 275179 - 274316 - | GTP-binding protein Era-like protein rnc 275856 - 275176 - | ribonuclease III TERM 226 275244 - 275255 + g 70 -3 -5.32565 | opp_overlap 275244 TTCTTCGACTAGAAC CAAT ACCT ATTG TTTTTTCATTAATTC lepB 276889 - 275957 - | signal peptidase I TERM 227 275994 - 276010 + g 77 -2.1 -5.8187 | overlap 275994 275997 TCAAATTGAATACCT GTAGGCC ACT GCCCTTC TTTTTTTATTAAATG lepA 278712 - 276925 - | GTP-binding protein LepA TERM 228 277224 - 277238 + g 81 -2.9 -5.75599 | TTTTATGAACTATTG TAGAT AAAGA ATCTA TTTTTTTATAATTTA TERM 229 279055 - 279033 - H 77 -8 -4.20288 | opp_overlap 279033 279035 279038, overlap 279028 279052 279054 TAAAATGAAATTAAA TATAATTATA TAG TATAATTATA TGTATCAACACATAT TERM 230 279427 - 279441 + G 73 -2.9 -5.48213 | TCAATTAAATATTTT TTTAC ATAAA GTAAA TTTTTCTTTTGAATA TERM 231 279624 - 279639 + G 75 -3.4 -5.4505 | opp_overlap 279624 ATGTACAAAAACGTA TATTTA AAAA TAAATA TTTTTTGTTAAGAGG trmU 279218 - 280330 + | putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ycfC 280403 - 281032 + | hypothetical protein TERM 232 281328 - 281318 - g 71 -2.6 -5.38054 | overlap 281312 CGTTAGAAATAAAAA TTTT AGA AAAA AAAACTAATCATGAC TERM 233 282069 - 282049 - g 77 -5.5 -5.10767 | overlap 282043 CATTTAATAGAAAAA TTGCCAA TTTCTCG TTGGCAA AGAGACTTAAGTGAT purB 281074 - 282456 + | adenylosuccinate lyase mltE 282568 - 283206 + | membrane-bound lytic murein transglycosylase E TERM 234 283396 - 283408 + G 80 -6.3 -4.81814 | opp_overlap 283396 283391, overlap 283391 ATTGCATAAACAAAA TGCTA CGT TAGCA TTTTCTTATCATACT TERM 235 283408 - 283396 - g 80 -6.3 -4.99645 | opp_overlap 283391 283396, overlap 283391 ATTGCATAAACAAAA TGCTA CGT TAGCA TTTTCTTATCATACT fabI 283259 - 284083 + | enoyl-[acyl-carrier-protein] reductase [NADH] TERM 236 284698 - 284714 + G 70 -5.9 -4.29845 | ACTTTATCACGTTAT CAATTAG AAT CTGATTG TTTTAAATTAAATTC rnb 284191 - 286131 + | exoribonuclease II TERM 237 286546 - 286572 + G 73 -5.3 -4.65446 | opp_overlap 286549 GAAATAAAACTAATT TAATAGCTAAT TTTTC AGTAGCTATTA TTTTATCTATATCAT ychE 286404 - 287051 + | hypothetical protein lipB 287195 - 287806 + | lipoate-protein ligase B lipA 287938 - 288882 + | lipoyl synthase pyrF 289664 - 288954 - | orotidine 5'-phosphate decarboxylase TERM 238 289831 - 289848 + H 78 -4.3 -5.81412 | opp_overlap 289831 289844 AAATAATTACATTAA TTTTATA AAAA TATAAAA TTTTTTTTAAATAAA TERM 239 290367 - 290354 - g 74 -2.5 -5.57888 | ATTAAAAAAATAAAA TTATT AACT AATAA CCCTTCAAAAGTAAC ribA 289913 - 290512 + | GTP cyclohydrolase II cls 292584 - 291112 - | cardiolipin synthetase TERM 240 292151 - 292140 - G 77 -3 -5.56264 | opp_overlap 292140 TCCAAATATAAAAAA CTAT TTCA ATAG TGTTTTTGGCTAAAT TERM 241 292335 - 292345 + g 78 -2.6 -5.75945 | overlap 292324 GTGATTTTAAATTAT TAAA ATG TTTA TTTTTTTTAGACCAT TERM 242 292418 - 292400 - G 75 -7.5 -3.97674 | CGAGTACCTAAATAA GGTTCTT CAAGT AAGAACC AAGTACATATACCAA yciA 293204 - 292797 - | putative acyl-CoA thioester hydrolase YciA ispZ 293796 - 293260 - | putative intracellular septation protein TERM 243 293532 - 293490 - G 71 -8.2 -3.24422 | opp_overlap 293501, overlap 293487 293488 293492 TATTTTTAAAAATTA TATTTAATAAATTATTTTTT ATA AATAAATAATTTATTAAAAA AACGATAGAAATTAG TERM 244 293530 - 293492 - G 90 -10.8 -3.18031 | opp_overlap 293501, overlap 293490 293487 293488 TTTTTAAAAATTATA TTTAATAAATTATTTTTT ATA AATAAATAATTTATTAAA AAAACGATAGAAATT TERM 245 293711 - 293695 - G 70 -6.7 -3.90889 | overlap 293698 AATTATAAATGTAAA TAATGAT GCT ATCATTA AAGAGAAAGATGCAA yciC 294572 - 293820 - | hypothetical protein trpA 295518 - 294709 - | tryptophan synthase alpha chain trpB 296707 - 295523 - | tryptophan synthase subunit beta TERM 246 296022 - 296001 - G 73 -8.8 -3.12289 | overlap 295994 295993 GAAAATATTCCAATA GCATTGGA TCCTCC TCCAATGC ATGCAATAATAATAT TERM 247 296611 - 296629 + g 77 -7.6 -4.10164 | overlap 296612 AATCATTAAGTGCTT TTAGAAAT TCT ATTTCTAA TTTATATAATGCTGG TERM 248 296690 - 296706 + g 71 -4.5 -4.8487 | opp_overlap 296690 AAATTCTCCAAAATA TGATTTT AAT AAAGTCA TTATTTTTTTCCTAA trpC 298116 - 296707 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 299126 - 298131 - | anthranilate phosphoribosyltransferase TERM 249 299651 - 299631 - H 77 -9.9 -2.62389 | opp_overlap 299631 299630, overlap 299630 299633 CAAGTTAGTTATAAT GATACTATT TAT AATAGTATC TATTACTTGGGGGAC TERM 250 299631 - 299651 + H 80 -9.9 -3.23853 | opp_overlap 299630 299631 299633, overlap 299630 CAAGTTAGTTATAAT GATACTATT TAT AATAGTATC TATTACTTGGGGGAC TERM 251 299988 - 300006 + H 70 -7.6 -3.409 | opp_overlap 299992, overlap 299986 300001 TTACAAAATCTTGGA TTAACATT AGC AATGTTAA TATTGTTGACAATTT yciL 300608 - 301351 + | ribosomal large subunit pseudouridine synthase B TERM 252 301757 - 301747 - g 82 -2.6 -5.9667 | AAAAAGACAAAAAAA TTAT GGA ATAA AAAAAACAAAATGTT sohB 301540 - 302589 + | putative periplasmic protease TERM 253 302713 - 302730 + T 71 -8.5 -3.12962 | overlap 302712 302723 AATTTTTATTACGAT GCATCTA TTAT TAGATGC TAATTTTAAAATTTT TERM 254 303062 - 303043 - T 83 -5.2 -6.02345 | GAATTATAAAAAAAA TTAATTTA GTTT TAAATTAA CAAAAATAATAGTTT TERM 255 303264 - 303229 - T 81 -7.4 -4.7254 | gap 1, overlap 303234 303259 ATTTGTTACTAAAAA TTTAATATTTAAAAAAA CCA TTTTTTTAAATA-TAAA TGAAATTTATAATAG TERM 256 303260 - 303234 - T 81 -9.8 -3.47218 | overlap 303229 303259 TTACTAAAAATTTAA TATTTAAAAAAA CCA TTTTTTTAAATA TAAATGAAATTTATA suhB 304365 - 303565 - | myo-inositol-1(or 4)-monophosphatase yfgB 304751 - 305872 + | hypothetical protein TERM 257 307199 - 307176 - f 72 -4.8 -5.28176 | TTTATCTATAAAAAA TTATTATCAA CTAA TTAATAATAA AATTGAATTTAATAA TERM 258 307219 - 307202 - f 75 -5.7 -4.95167 | opp_overlap 307201 307208, overlap 307212 TAATTAATAATAAAA TTGAATT TAAT AATTCAA AATTAATAATTATAA TERM 259 308350 - 308336 - g 91 -2.8 -6.34424 | TTCCTAAAAAAAAAA TAATGC TCA GCATTT TATCAAGCAATCTTA hisS 307258 - 308535 + | histidyl-tRNA synthetase TERM 260 308519 - 308541 + F 86 -5 -6.09888 | opp_overlap 308519 308521, overlap 308522 TAGAAGAATTAGAAT TAGCTTTTAA AAA TTAAAAGGTA TTTTTTTTGTTAACA glyA 308661 - 309914 + | serine hydroxymethyltransferase TERM 261 309942 - 309972 + T 100 -13.6 -3.90874 | opp_overlap 309949, overlap 309937 TTTATTAAACTTTTA TATTATACCATCTA AAT TAGATGGTGTAATA TTTGAATATTTTTTA TERM 262 309965 - 309949 - T 78 -9.5 -2.85847 | opp_overlap 309942 309937 AACTTTTATATTATA CCATCTA AAT TAGATGG TGTAATATTTGAATA bioD 310717 - 310034 - | dethiobiotin synthetase bioC 311457 - 310714 - | biotin synthesis protein BioC bioF 312601 - 311447 - | 8-amino-7-oxononanoate synthase TERM 263 312499 - 312515 + g 73 -3.1 -5.44721 | GCATACCATTAACAT TAATAAT TCT ATTGTTA TTTTTTTGAACTGCT bioB 313632 - 312598 - | biotin synthase TERM 264 313476 - 313490 + g 76 -7.1 -4.4078 | AATATTTACAATCTT CAGGG CATGC CCCTG TTTTAATTGACAAAA bioA 313714 - 315003 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 265 314993 - 315003 + T 74 -2.6 -6.22802 | ATTATGAAAATTTTT TTAT GAA ATAA TTTTTTTTTATAACA ybhE 316006 - 315011 - | 6-phosphogluconolactonase TERM 266 315608 - 315628 + g 74 -8.4 -3.29544 | opp_overlap 315607 315604, overlap 315605 ATTGTAACAATTCAT TTTGGATG CATGA CATCCAAA TATGTTCTTAATAGT TERM 267 315960 - 315971 + g 70 -3 -5.20216 | TGTAATTTCCATACT TCAA TTTC TTGA TTTTTTGCTAATGTA TERM 268 316062 - 316085 + r 71 -6.2 -4.48333 | opp_overlap 316077, overlap 316071 316077 TTTATAATATATTAT CAGTTTTAAT ATAA ATTAAAATTG TTTTAATTAATATAT mfd 318527 - 316434 - | transcription-repair coupling factor TERM 269 316890 - 316905 + g 79 -3.3 -5.61913 | opp_overlap 316890 TATGATGTCATTTAA TGGTT TGTAGT AACCA TTTTTTATATTTCTT TERM 270 317130 - 317145 + g 76 -9 -3.01791 | opp_overlap 317130, overlap 317144 CGAAGGTACTAACAA CCAAGC ATAC GCTTGG TGTTGAGAACGACCT TERM 271 317145 - 317130 - G 82 -9 -3.75105 | opp_overlap 317130 317144 CGAAGGTACTAACAA CCAAGC ATAC GCTTGG TGTTGAGAACGACCT TERM 272 318635 - 318584 - H 74 -7.8 -3.88618 | opp_overlap 318587, overlap 318585 AATAGAAGTAGTAAA TTTTTTTAGATTAAATATTATATT ATGA AATATAATATTTAATCTAAAATTT TATTATCTTTATTTT TERM 273 318634 - 318585 - H 88 -11.3 -2.92086 | opp_overlap 318587, overlap 318584 ATAGAAGTAGTAAAT TTTTTTAGATTAAATATTATATT ATGA AATATAATATTTAATCTAAAATT TTATTATCTTTATTT TERM 274 318587 - 318632 + H 100 -18.3 -4.96657 | opp_overlap 318585 318584 AGAAGTAGTAAATTT TTTTAGATTAAATATTATATT ATGA AATATAATATTTAATCTAAAA TTTTATTATCTTTAT TERM 275 318866 - 318834 - H 74 -8.1 -3.67648 | opp_overlap 318832, overlap 318832 318829 ATATAAATAACAATA TTTTTTTTAAAATAT TTT ATATTTTTAAAAAAA AAATTAACGAAATTC TERM 276 320025 - 320005 - H 74 -7.1 -4.37763 | opp_overlap 319995 319993 320004 320008, overlap 320003 GTATTTAAAAAAATA TTTTTTATA TTA TATAAAAAA ATATAATAAAAATGT TERM 277 320468 - 320458 - g 71 -4 -5.08824 | GCTGGAGCTAAAAAA GTAA TTA TTAC TAGCCCACCAAAAGA gapA 320110 - 321111 + | glyceraldehyde 3-phosphate dehydrogenase TERM 278 321196 - 321145 - T 95 -12.2 -2.78052 | gap 1, opp_overlap 321141 321152, overlap 321141 321152 TTATAAAACAATTTA TTATAAATTTCATATTGACATTAAA TGA TTTAACGTC-ATATGAAATTTATTA CGCAAAATTAAATCA TERM 279 321189 - 321152 - T 91 -10.3 -3.99806 | gap 1, opp_overlap 321152, overlap 321145 ACAATTTATTATAAA TTTCATATTGACATTAAA TGA TTTAACGTC-ATATGAAA TTTATTACGCAAAAT TERM 280 321152 - 321189 + T 79 -8.1 -4.15222 | gap 1, opp_overlap 321152 321145 ACAATTTATTATAAA TTTCATATTGACATTAAA TGA TTTAACGTCA-TATGAAA TTTATTACGCAAAAT fldA 321781 - 321257 - | flavodoxin FldA TERM 281 322675 - 322665 - g 71 -2.6 -5.43974 | opp_overlap 322665 AAAATTAAAGAAAAA TAAT ATT ATTA TAAATTGTTTTCATG phrB 322294 - 323730 + | deoxyribodipyrimidine photolyase ybgI 323766 - 324509 + | hypothetical protein TERM 282 326196 - 326182 - g 80 -8.6 -4.04576 | ATGGACATAATGAAA TTGACG ATC CGTCAA TAACACAGCCGGTTT TERM 283 326840 - 326828 - g 74 -2.7 -5.60864 | CATAGATCAAAAAAA CACAT TAA ATGTA TGGGAAGCACAATTT TERM 284 327436 - 327423 - g 70 -6.7 -3.9461 | opp_overlap 327428 TGGTGTCAAGAAGAA CCTTG TAAT CAAGG CGCGTGGTTATATCA kgd 324852 - 327602 + | alpha-ketoglutarate decarboxylase TERM 285 327821 - 327805 - g 78 -8.1 -4.053 | ATTATTGCAGATAAA GGTAAAA TAG TTTTACC AGGACAAGTTATAGG sucB 327613 - 328845 + | dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex TERM 286 328925 - 328896 - T 77 -7.9 -4.15565 | opp_overlap 328894 328896 328897, overlap 328897 TTTATTATGTTAAAA TTTGGTGCTATGA TGAA TCTTAGCACCAAT ATGTTTTTAGAAATT TERM 287 328897 - 328924 + T 95 -11.4 -3.54256 | opp_overlap 328897 328896, overlap 328896 328894 TTATTATGTTAAAAT TTGGTGCTATGA TGAA TCTTAGCACCAA TATGTTTTTAGAAAT TERM 288 328924 - 328897 - T 95 -11.4 -3.09018 | opp_overlap 328896 328894 328897, overlap 328896 TTATTATGTTAAAAT TTGGTGCTATGA TGAA TCTTAGCACCAA TATGTTTTTAGAAAT pal 329469 - 328948 - | peptidoglycan-associated lipoprotein precursor gpmA 330198 - 330896 + | phosphoglycerate mutase TERM 289 331036 - 331054 + F 72 -9 -2.64651 | opp_overlap 331023 331032 331040, overlap 331040 GATAATAATATTTAT TAGATCTT AAT AAGATCTA TCACTTTAAGAGATT TERM 290 331429 - 331419 - g 74 -6.8 -4.34766 | opp_overlap 331419, overlap 331415 AAAAATTAACAGAAA TGGG TTT CCCA TGTATTAGCATACCA pfkA 331073 - 332035 + | 6-phosphofructokinase TERM 291 332714 - 332724 + T 75 -4 -5.81032 | TATTTTTTTTTAATT CATA TTA TATG TTTTTTTTACAATTG tpiA 333717 - 332959 - | triosephosphate isomerase rpsA 335705 - 334005 - | 30S ribosomal protein S1 TERM 292 335529 - 335541 + g 77 -6.3 -4.76892 | overlap 335523 TACTTTAACCTCAAG TTCTC CTT GAGAA TTTTTAAATTGATCT cmk 336508 - 335816 - | cytidylate kinase aroA 337948 - 336665 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 293 337501 - 337479 - G 70 -4.8 -4.64676 | opp_overlap 337479 TTACCTCCAATAAAA CCACCTTTTA TTT TTATAGGTGG ATATTGATCTTGTTC TERM 294 337669 - 337647 - G 79 -9.2 -3.38584 | opp_overlap 337652, overlap 337648 337652 ATAGCAGCTAACGAA CGAAATGCTG TTC CAGCATTTCC TAAAAATAGTGATGT TERM 295 337668 - 337648 - G 100 -12.7 -2.62668 | opp_overlap 337652, overlap 337647 337652 TAGCAGCTAACGAAC GAAATGCTG TTC CAGCATTTC CTAAAAATAGTGATG TERM 296 337664 - 337652 - G 75 -7.7 -4.0075 | opp_overlap 337652, overlap 337648 337647 AGCTAACGAACGAAA TGCTG TTC CAGCA TTTCCTAAAAATAGT TERM 297 337652 - 337664 + g 73 -7.7 -3.73953 | opp_overlap 337652 337648 337647 AGCTAACGAACGAAA TGCTG TTC CAGCA TTTCCTAAAAATAGT TERM 298 337983 - 338000 + r 78 -4.3 -5.84381 | overlap 337977 ATAAAGTTGTTATTT TTAATAA ATAA TTATTAA TTTTTTTATTGATAA serC 339143 - 338022 - | phosphoserine aminotransferase TERM 299 338735 - 338774 + g 76 -4.6 -5.1925 | gap 1, opp_overlap 338750, overlap 338738 TATATTGTTTTTTAT TATTTGTTTTACATACATT TAA AATGTTTGTATAACAA-TA TTTTTTCGCTTCTAA TERM 300 338738 - 338772 + g 81 -8.8 -4.21792 | opp_overlap 338750, overlap 338735 ATTGTTTTTTATTAT TTGTTTTACATACATT TAA AATGTTTGTATAACAA TATTTTTTCGCTTCT serS 340554 - 339256 - | seryl-tRNA synthetase TERM 301 340897 - 340913 + H 70 -5.3 -4.86861 | TTATATCCATGTTAT TTTTAAT AAA ATTAAAA TTTATTTATTTCTTC TERM 302 341089 - 341052 - H 95 -11.8 -4.20696 | opp_overlap 341058, overlap 341064 341078 TTATCAAGTTTAAAA TTGAAATAAAAATTAT GTTATA ATAATTTTTATTTCAA AAACAATTAATATGC TERM 303 341339 - 341311 - g 79 -9 -3.49209 | AGAGCAAATCTAGAA CCCTTGTTGTTC ACTGG AAACAACAAAGG AGGACAACTTATAAA trxB 341206 - 342186 + | thioredoxin reductase infA 342241 - 342459 + | translation initiation factor IF-1 TERM 304 343377 - 343367 - g 71 -4 -5.11063 | ATGATGCAATAAAAA TGTA TGG TACA GACAAACCTGATTTA aspS 342535 - 344265 + | aspartyl-tRNA synthetase znuB 345142 - 344357 - | high-affinity zinc uptake system membrane protein ZnuB znuC 345894 - 345178 - | high-affinity zinc uptake system ATP-binding protein ZnuC TERM 305 346919 - 346896 - g 78 -9 -3.1552 | overlap 346901 GGCGACGGAGTAATA TTGAATGCCA AATT TAGCATTCAA GCAGGTAATTATATT yebA 346080 - 347210 + | metalloendopeptidase-like membrane protein pykA 348718 - 347279 - | pyruvate kinase TERM 306 349864 - 349876 + G 70 -6.3 -4.17958 | opp_overlap 349864 349862 GACAAATTAAAGATA TGGTT CAA AACCA TTTATTACAAATATT zwf 349167 - 350639 + | glucose-6-phosphate 1-dehydrogenase TERM 307 351744 - 351732 - g 76 -4.1 -5.4756 | opp_overlap 351732 AACCTCAAGAAAAAA GCAAC ATA ATTGC ATTTTGTATAAATGG htpX 350972 - 351847 + | heat shock protein HtpX TERM 308 352023 - 352008 - f 73 -6.2 -4.60648 | AAAATATTAAATAAA CGTTTT TAAA AAAACG AGTGAAATTAAATTT TERM 309 352331 - 352305 - f 75 -6 -5.01732 | gap 1, opp_overlap 352274 352305 AACGTTTTTAAAAAA GGCCTTT-GTA TGTTTT TACAAAAGGCC TTTATTATTAAAAAA TERM 310 353331 - 353320 - g 86 -4.4 -5.7827 | AAGATAAAGAAAAAA TACG AAAT CGTA CTACAGACACAGAAT yoaE 352488 - 354047 + | hypothetical protein yeaZ 354198 - 354863 + | putative protease precursor TERM 311 354905 - 354923 + T 75 -4.6 -5.5454 | opp_overlap 354908, overlap 354908 TGAAAGAGTCACATT CAATTCTA ATA TAGAAATG TTTTTATTTGTTTGA minE 355135 - 354884 - | cell division topological specificity factor MinE TERM 312 355079 - 355097 + g 78 -2.4 -5.75342 | overlap 355081 355082 AATTTGAAGCCGTTC TTTTGCTA TAT TAGCAGTA TTTTTTTTACGGGAC minD 355951 - 355139 - | septum site-determining protein minC 356680 - 355976 - | putative septum site-determining protein MinC TERM 313 356938 - 356923 - H 70 -3.4 -5.58074 | opp_overlap 356923 356926 356930, overlap 356926 356936 TAATTATGAAAAAAA TTATTT ATAT AAATAA ATTATAATTTATTTG TERM 314 356930 - 356955 + H 75 -5.7 -5.05505 | opp_overlap 356923 356926 356936, overlap 356923 356926 GAAAAAAATTATTTA TATAAATAAAT TATA ATTTATTTGTA TTTTTAATTTATAAT rsmC 357059 - 358039 + | ribosomal RNA small subunit methyltransferase C TERM 315 358202 - 358222 + T 86 -10.5 -3.39772 | overlap 358205 GCAAAGCCATAAGGC CGAGGGATT TTA AATCCCTTG TGTTTACCGATTTCA TERM 316 358205 - 358219 + T 80 -8.6 -3.82603 | overlap 358202 AAGCCATAAGGCCGA GGGATT TTA AATCCC TTGTGTTTACCGATT TERM 317 358604 - 358584 - T 77 -9.7 -2.72511 | overlap 358583 358586 358600 CTGAGTGGTTTAAAG CAGCGGTCT TGA AAACCGCCG ATGAGAAATCATCCG TERM 318 358602 - 358586 - T 73 -8.7 -2.90813 | overlap 358584 358583 358600 GAGTGGTTTAAAGCA GCGGTCT TGA AAACCGC CGATGAGAAATCATC mviN 360243 - 358702 - | virulence factor MviN TERM 319 359595 - 359570 - G 88 -10.7 -3.13743 | opp_overlap 359576, overlap 359568 359576 AAAAATTTCAATACA CCTAAATTTAA AATA TTAAATTTAGG AAATATTAACATGTT flgB 361919 - 362329 + | flagellar basal-body rod protein Flgb flgC 362333 - 362743 + | flagellar basal-body rod protein FlgC TERM 320 363137 - 363091 - f 88 -10 -3.83409 | opp_overlap 363083 363093 363093, overlap 363083 363093 TTACATATTATTAAA CATTTAATAATTAAATATTTTA TCG TTAAATATTTAATTATTAAATT TAACTTATGGAATTA TERM 321 363135 - 363093 - f 100 -12.6 -3.49884 | opp_overlap 363083 363093 363093, overlap 363083 363091 ACATATTATTAAACA TTTAATAATTAAATATTTTA TCG TTAAATATTTAATTATTAAA TTTAACTTATGGAAT TERM 322 363093 - 363135 + F 100 -12.6 -3.80893 | opp_overlap 363083 363091 363093, overlap 363083 363093 ACATATTATTAAACA TTTAATAATTAAATATTTTA TCG TTAAATATTTAATTATTAAA TTTAACTTATGGAAT TERM 323 363208 - 363192 - f 75 -4.5 -5.50925 | opp_overlap 363192 363195, overlap 363193 AATCAACACAAAAAA CTAGAAT TGT ATTCTAA ATTTTAAGTATGCAT flgF 363479 - 364225 + | flagellar basal body rod protein FlgF flgG 364255 - 365037 + | flagellar basal-body rod protein FlgG flgH 365107 - 365841 + | flagellar L-ring protein precursor flgI 365946 - 367073 + | flagellar basal body P-ring protein flgJ 367077 - 367529 + | flagellar protein FlgJ-like protein TERM 324 367712 - 367747 + T 95 -11.4 -4.14345 | opp_overlap 367712 AAAGCCAACACATAA TTTCCCATAGCTAAAT AAAA ATTTCGTTATGGGAAA TTTAGTTTAATATTA TERM 325 367747 - 367712 - T 80 -9.2 -3.71156 | opp_overlap 367712 AAAGCCAACACATAA TTTCCCATAGCTAAAT AAAA ATTTCGTTATGGGAAA TTTAGTTTAATATTA rne 369770 - 368538 - | ribonuclease G TERM 326 370262 - 370252 - g 73 -5.4 -4.7254 | ACTTTTTACGAAAAA CCTT TAA AAGG TTACCATTCAATTTA rluC 370167 - 371114 + | ribosomal large subunit pseudouridine synthase D rpmF 371349 - 371513 + | 50S ribosomal protein L32 TERM 327 371994 - 371972 - g 74 -2.8 -5.62552 | opp_overlap 371975 AAAAAAATTAAAAAA CAACAAGT ATTCACA ACTTGTTA CTCTTGTATCATCTA fabD 371796 - 372731 + | malonyl CoA-acyl carrier protein transacylase fabG 372741 - 373478 + | 3-oxoacyl-[acyl-carrier protein] reductase acpP 373583 - 373819 + | acyl carrier protein TERM 328 373909 - 373871 - f 76 -8.4 -3.87505 | opp_overlap 373876, overlap 373851 373873 373876 ATTATATTATAATAA CATAACATTGAATATCTA AAA TAGATAAACAATGTTATA AAAATTCTAGTACAC TERM 329 373907 - 373873 - f 76 -8.8 -3.51879 | opp_overlap 373876, overlap 373851 373871 373876 TATATTATAATAACA TAACATTGAATATCTA AAA TAGATAAACAATGTTA TAAAAATTCTAGTAC TERM 330 374102 - 374092 - g 71 -4 -5.15117 | TAAAACCCTAAAAAA CATA TTA TATG AACATGGTATTAAAA tmk 374000 - 374653 + | thymidylate kinase TERM 331 375364 - 375354 - g 78 -2.6 -5.80364 | ATTTCAAGAAAAAAA TTTT TTA AAAA TGCTAAACGTGTTAA holB 374650 - 375660 + | DNA polymerase III delta' subunit ycfH 375693 - 376490 + | putative deoxyribonuclease TERM 332 377708 - 377720 + G 70 -6.3 -4.17762 | overlap 377699 TAATTTTTGGTTGTT TCCAA TAG TTGGA TTATTTTACGGAATA TERM 333 377782 - 377772 - g 74 -2.6 -5.67063 | TTTATGATAAAAAAA TTTA ATT TAAA AACACCTGGAAGAGA ptsG 376638 - 378077 + | glucose-specific PTS system IIBC components ycfF 378195 - 378533 + | HIT-like protein TERM 334 379228 - 379214 - T 79 -5.8 -5.38054 | GTTCATAAATAAAAA CATAAA ATA TTTATG ACATTAAATCATATC TERM 335 379466 - 379452 - T 75 -8.6 -3.34488 | opp_overlap 379452, overlap 379451 AATTTTTCTAAAAAT CAGCTT TAT AAGCTG TTCTAGGAAACGGGC TERM 336 379452 - 379466 + T 75 -8.6 -3.28712 | opp_overlap 379452 379451 AATTTTTCTAAAAAT CAGCTT TAT AAGCTG TTCTAGGAAACGGGC asnC 380844 - 379444 - | asparaginyl-tRNA synthetase TERM 337 381277 - 381263 - R 75 -4.4 -5.55855 | opp_overlap 381263, overlap 381249 TTTAAAAAAACAAAA TTTTTT AAT AAAAAA GATTTTTTAAAAAAT yceA 382886 - 381948 - | hypothetical protein valS 385837 - 382967 - | valyl-tRNA synthetase TERM 338 385523 - 385533 + g 80 -5.4 -5.28831 | TTCTTTTTTTCCCAA CTGT TGA ACAG TTTTATTTTCTTCCT pepA 387417 - 385912 - | cytosol aminopeptidase argF 387894 - 388913 + | ornithine carbamoyltransferase subunit I TERM 339 389180 - 389132 - f 85 -10.1 -3.57629 | opp_overlap 389138 389150 389160 389175, overlap 389127 389133 389138 389150 CAATAACCTACACAA CTTAAAGTTATAAAAAAATAAAA TAA TTTTAATTTTTTGTAACTTTAAA AAAAATTGATTTTTA TERM 340 389179 - 389133 - f 93 -11.4 -2.73854 | opp_overlap 389138 389150 389160 389175, overlap 389127 389132 389138 389150 AATAACCTACACAAC TTAAAGTTATAAAAAAATAAAA TAA TTTTAATTTTTTGTAACTTTAA AAAAAATTGATTTTT TERM 341 389138 - 389174 + F 78 -9.1 -3.54459 | opp_overlap 389127 389138 389133 389132 389150, overlap 389150 389160 CCTACACAACTTAAA GTTATAAAAAAATAAAA TAA TTTTAATTTTTTGTAAC TTTAAAAAAAATTGA TERM 342 389162 - 389150 - f 73 -3.5 -5.68039 | opp_overlap 389150 389138 389160, overlap 389138 389133 389132 AAAGTTATAAAAAAA TAAAA TAA TTTTA ATTTTTTGTAACTTT yhaR 389813 - 390193 + | translational inhibitor protein TERM 343 390245 - 390216 - T 86 -6.5 -5.60993 | opp_overlap 390215, overlap 390220 CTGTTTAGAAAAAAA CAAAGGCAAAGAA AGAG TTCTTTGCCTTAC CCTTTAATTGCTTTA TERM 344 390241 - 390220 - T 100 -11.7 -5.27709 | opp_overlap 390215, overlap 390216 TTAGAAAAAAACAAA GGCAAAGAA AGAG TTCTTTGCC TTACCCTTTAATTGC deaD 392154 - 390346 - | ATP-dependent RNA helicase TERM 345 392044 - 392021 - G 70 -8.2 -3.07895 | GCCATTCCTAATACA TCCTTTCCTT TTAT AAGGTAAGGA ATGCAAGCAGCCTGA TERM 346 392204 - 392220 + r 77 -5.3 -5.4505 | opp_overlap 392207 392210 392215 GTGTACATTAGTTCA TAATAAT AAT ATTATTA TTTTTTATTAAAAAA TERM 347 392674 - 392657 - R 86 -5.7 -5.71712 | GCTTACATAAAAAAA TATGAAT TAGT ATTCATA ACATAAATATTTATT pnp 394766 - 392685 - | polynucleotide phosphorylase/polyadenylase TERM 348 393504 - 393488 - G 82 -9.5 -3.494 | TAATTTCTGATACAA TCCGTAT TGT ATACGGA AATAAATCTAATTTA TERM 349 394923 - 394968 + r 86 -9.3 -4.13014 | opp_overlap 394926 394929 394940, overlap 394926 394929 AGCAATTAGTTATTC AAATAATTTTTTAAAAAGGGC ATTT GCCCCTTTTAAAAAATTATAC TTTTAACACTCTGAA TERM 350 394926 - 394965 + r 100 -15.4 -3.09272 | opp_overlap 394926 394929 394940, overlap 394923 394929 AATTAGTTATTCAAA TAATTTTTTAAAAAGGGC ATTT GCCCCTTTTAAAAAATTA TACTTTTAACACTCT TERM 351 394965 - 394926 - R 100 -17.6 -3.67564 | opp_overlap 394923 394926 394929, overlap 394929 394940 AATTAGTTATTCAAA TAATTTTTTAAAAAGGGC ATTT GCCCCTTTTAAAAAATTA TACTTTTAACACTCT TERM 352 394962 - 394929 - R 100 -14.9 -3.9693 | opp_overlap 394926 394923 394929, overlap 394926 394940 TAGTTATTCAAATAA TTTTTTAAAAAGGGC ATTT GCCCCTTTTAAAAAA TTATACTTTTAACAC TERM 353 394929 - 394962 + r 100 -12.7 -3.68359 | opp_overlap 394929 394926 394940, overlap 394926 394923 TAGTTATTCAAATAA TTTTTTAAAAAGGGC ATTT GCCCCTTTTAAAAAA TTATACTTTTAACAC TERM 354 394951 - 394940 - R 79 -7.2 -4.60255 | opp_overlap 394929 394926 394923, overlap 394929 394926 ATAATTTTTTAAAAA GGGC ATTT GCCC CTTTTAAAAAATTAT rpsO 395276 - 395007 - | 30S ribosomal protein S15 truB 396316 - 395408 - | tRNA pseudouridine synthase B TERM 355 396255 - 396274 + g 78 -9.4 -3.12749 | opp_overlap 396255 AGAGTTTCATGAGAA GATAAACC ATAT GGTTTATC TATTAAAATTATTCC TERM 356 396274 - 396255 - G 82 -9.4 -3.41229 | opp_overlap 396255 AGAGTTTCATGAGAA GATAAACC ATAT GGTTTATC TATTAAAATTATTCC rbfA 396723 - 396349 - | ribosome-binding factor A infB 399390 - 396760 - | translation initiation factor IF-2 nusA 400898 - 399405 - | transcription elongation factor NusA TERM 357 399807 - 399835 + g 100 -10.7 -4.88684 | opp_overlap 399806 399814 AATTTTCTGATCAAT TTTTAAATATTTT GTA AAAATATTTAAAA TTTTATCTTTCTCTT TERM 358 400195 - 400223 + g 88 -10.3 -3.33286 | overlap 400193 400193 400196 CTTTTTACAGCTATT TTAGCACGTGATC CTG GATCGCGTGCTGC TGATTTTATTTCAAT TERM 359 400196 - 400222 + g 100 -13.8 -2.58887 | overlap 400195 400193 400193 TTTTTACAGCTATTT TAGCACGTGATC CTG GATCGCGTGCTG CTGATTTTATTTCAA TERM 360 400764 - 400784 + g 70 -2 -5.5112 | gap 1, overlap 400768 ATTTATTTTAACTCG TAC-ATCAA TTTC TTGATCGTA TTTTTTCTTAGTAGC TERM 361 401083 - 401028 - R 100 -25.5 -3.02829 | opp_overlap 401028 401038 401041 401047, overlap 401038 401041 401047 TACACTTTCTTAAGA TTATTTATAACAATAAAAATCCCCA CATCTT TGGGGATTTTTATTGTTATAAATAA TCTTAAGAAAGTGTA TERM 362 401028 - 401083 + r 100 -25.5 -3.02829 | opp_overlap 401028 401038 401041 401047, overlap 401038 401041 401047 TACACTTTCTTAAGA TTATTTATAACAATAAAAATCCCCA CATCTT TGGGGATTTTTATTGTTATAAATAA TCTTAAGAAAGTGTA TERM 363 401073 - 401038 - R 100 -16.5 -3.39482 | opp_overlap 401028 401038 401041 401047, overlap 401028 401041 401047 TAAGATTATTTATAA CAATAAAAATCCCCA CATCTT TGGGGATTTTTATTG TTATAAATAATCTTA TERM 364 401038 - 401073 + r 100 -16.5 -3.39482 | opp_overlap 401038 401028 401041 401047, overlap 401028 401041 401047 TAAGATTATTTATAA CAATAAAAATCCCCA CATCTT TGGGGATTTTTATTG TTATAAATAATCTTA TERM 365 401070 - 401041 - R 100 -12.4 -3.82824 | opp_overlap 401038 401028 401041 401047, overlap 401038 401028 401047 GATTATTTATAACAA TAAAAATCCCCA CATCTT TGGGGATTTTTA TTGTTATAAATAATC TERM 366 401041 - 401070 + r 100 -12.4 -3.82824 | opp_overlap 401041 401038 401028 401047, overlap 401038 401028 401047 GATTATTTATAACAA TAAAAATCCCCA CATCTT TGGGGATTTTTA TTGTTATAAATAATC TERM 367 401064 - 401047 - R 86 -7 -5.34365 | opp_overlap 401041 401038 401028 401047, overlap 401041 401038 401028 TTATAACAATAAAAA TCCCCA CATCTT TGGGGA TTTTTATTGTTATAA TERM 368 401047 - 401064 + r 86 -7 -5.34365 | opp_overlap 401047 401041 401038 401028, overlap 401041 401038 401028 TTATAACAATAAAAA TCCCCA CATCTT TGGGGA TTTTTATTGTTATAA mrsA 403125 - 401764 - | putative phosphoglucosamine mutase TERM 369 402865 - 402881 + g 71 -8.1 -3.16564 | opp_overlap 402865 TTCTAAATTAAATAA TTTCGTA AAA TACGAAA TTGCTGGAGTAGGAA TERM 370 402881 - 402865 - G 80 -8.1 -4.15396 | opp_overlap 402865 TTCTAAATTAAATAA TTTCGTA AAA TACGAAA TTGCTGGAGTAGGAA TERM 371 403209 - 403243 + r 80 -9.6 -3.03124 | opp_overlap 403194 403191 403215 403216, overlap 403194 403211 403215 TTCATATATTTTTTA TATGAATGCTTTAAAA ATT TTTTAAAACGTTCATA TGTTAAAACCTAAAC TERM 372 403345 - 403319 - R 72 -5.4 -4.92791 | overlap 403320 403333 CATAATATAACAAAA CTTTATACAAAA AAT TTTTATATAAAA ACCAACAATACTTAA hflB 405352 - 403520 - | cell division protein TERM 373 404416 - 404404 - G 72 -4.9 -4.87786 | GCAACGCTACAAAAA TTTGA CGA TCAAA ACGCCCTGGCCTTAA TERM 374 404704 - 404694 - G 73 -5.4 -4.6759 | AACATTTCAACAAAA TCAG ATC CTGA AATAGTAAAAAATGG ftsJ 406043 - 405411 - | ribosomal RNA large subunit methyltransferase J greA 406657 - 406178 - | transcription elongation factor GreA TERM 375 406216 - 406227 + g 78 -5.8 -4.9218 | TTTTATATTTTACAT CACC TACA GGTG TTTTTATCGTAGCTA TERM 376 406869 - 406843 - H 70 -7.6 -3.54307 | opp_overlap 406843 AATACTGTCTTTAAA TTTACTTTATAA TTC TTATAAAATAAA TTTTTAGAGTAAAAC yrbA 407141 - 407380 + | YrbA murA 407401 - 408651 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase rplU 408888 - 409226 + | 50S ribosomal protein L21 rpmA 409216 - 409473 + | 50S ribosomal protein L27 TERM 377 409625 - 409643 + F 71 -6.2 -4.33582 | TTTCGAAAACAATTC TATTAATT ACT AATTAATA TTATTTGTTATTAAA obgE 409712 - 410728 + | GTPase ObgE rpsI 411338 - 410946 - | ribosomal protein S9 TERM 378 411238 - 411256 + g 79 -9 -3.41222 | opp_overlap 411237 411241, overlap 411237 AAATAATTATTTAAT TTACGATT ATT AATCGTAA TATTTCCAGTTCCAG TERM 379 411315 - 411284 - G 80 -8.8 -3.90762 | opp_overlap 411313, overlap 411282 411286 411289 CAGTTTTTAAAAATA CACGAGCAGAAGAA CTCT TTCTTCTGCCAGTA CCATATTGATACATA TERM 380 411313 - 411286 - G 80 -9.2 -3.53855 | overlap 411282 411284 411289 GTTTTTAAAAATACA CGAGCAGAAGAA CTCT TTCTTCTGCCAG TACCATATTGATACA TERM 381 411310 - 411289 - G 93 -11.7 -2.89632 | overlap 411286 411282 411284 TTTAAAAATACACGA GCAGAAGAA CTCT TTCTTCTGC CAGTACCATATTGAT rplM 411785 - 411351 - | 50S ribosomal protein L13 TERM 382 411802 - 411818 + H 74 -5.3 -5.20328 | TTTATTCCTATGGAT TTTAATT ACA AATTAAA TTTATTTTTTTGAAA TERM 383 412097 - 412087 - H 79 -2.6 -6.32216 | overlap 412092 412094 ATACATAAAAAAAAA TAAA ATA TTTA TAATAAACATATTAA TERM 384 412161 - 412149 - g 72 -3.4 -5.23316 | opp_overlap 412139, overlap 412139 CATGACATTAAAAAA TGCT TTACT AGCA TTCAGAAACGCCATT pheA 412135 - 413250 + | P-protein TERM 385 413333 - 413298 - f 73 -6.5 -4.6008 | gap 2, overlap 413332 AAAATATAATCAAAA TGCTCTATTTTCTCCAT TTTT AT-GAGAA-ATAGAGCA AAAAAATTTATTTTT ffh 413493 - 414845 + | signal recognition particle protein rpsP 414937 - 415200 + | 30S ribosomal protein S16 TERM 386 415208 - 415193 - f 73 -3.4 -5.85737 | opp_overlap 415193, overlap 415198 415204 ATATTAATAAAAAAA TAAAAT AACA ATTTTA ATTATTAAAACAATG rimM 415221 - 415763 + | 16S rRNA processing protein rimM trmD 415789 - 416541 + | tRNA (guanine-N1)-methyltransferase rplS 416573 - 416929 + | 50S ribosomal protein L19 tldD 418524 - 417073 - | TldD protein TERM 387 417513 - 417525 + g 74 -4.9 -5.03314 | opp_overlap 417524, overlap 417522 AACGAGCATTTGTTT TATCT TGA AGATA TTTTTTCAAAATACC aroQ 418870 - 419334 + | 3-dehydroquinate dehydratase rluD 420424 - 419471 - | ribosomal large subunit pseudouridine synthase D TERM 388 422102 - 422085 - g 75 -3.5 -5.40464 | TAGCATAAATAAAAA TTTCTTA AATA CAAGAAA TGCCTACTATATTGA TERM 389 422278 - 422264 - g 80 -8.6 -4.06502 | TATTTTTAAATGAAA CTCCAT TTT ATGGAG AATCAGGTGGACAAA alaS 420763 - 423405 + | alanyl-tRNA synthetase csrA 423584 - 423766 + | carbon storage regulator-like protein TERM 390 423780 - 423812 + F 100 -12.9 -3.30006 | opp_overlap 423779 423778 423782 AACTATTAATAAATT CAGCGTCTTGCTT AATAAAA AAGCAAGATGCTG TTACTATGAATTCGT TERM 391 423986 - 423970 - f 72 -8.7 -2.53581 | opp_overlap 423970 GAGAGGCTGAAGGCA CTCCCCT GCT AAGGGAG TATGTAAAATAAATT TERM 392 424099 - 424083 - f 72 -8.7 -2.69468 | overlap 424080 424095 CAGTTGGATAGAGCA CTCGGCT ACG AACCGAG AGGTCGGAGGTTCAA gshA 424268 - 425833 + | glutamate-cysteine ligase endA 426182 - 426919 + | endonuclease I ygfA 427797 - 427210 - | 5-formyltetrahydrofolate cyclo-ligase TERM 393 427895 - 427925 + r 78 -8.6 -3.71224 | opp_overlap 427903 427905, overlap 427891 427893 TGCACTCATACTGTT TTATAAAACATACT TTA AGTATATTTTATAA TATTATTTTAGATAT rpiA 428829 - 428173 - | ribose-5-phosphate isomerase A TERM 394 430569 - 430557 - g 75 -3.4 -5.40072 | TGTTTTGCAAAAAAA TTGG GATTA CCAA GCAAGAAAATACAAT TERM 395 431154 - 431135 - g 71 -4.4 -4.82901 | GGTTTCGTAGAAAAA GATATATT AACA AACATATC TACAACTGCATATCA TERM 396 431188 - 431205 + G 70 -5.7 -4.34402 | opp_overlap 431188 TGAACGAGAAGGATA TTTTTGT ATTA ACAAAAA TTTTAGTATAACAAA glnS 429617 - 431269 + | glutaminyl-tRNA synthetase pyrG 431582 - 433216 + | CTP synthetase eno 433283 - 434578 + | enolase TERM 397 435693 - 435683 - T 72 -5.4 -4.91511 | ATTTTAGTAGAAAAA GTTG AAT CAAC AAACGCAGTAATCGA TERM 398 437225 - 437209 - T 70 -5.3 -4.87807 | overlap 437202 TTAATATATTAAAAA TTTTTAA AGC TTAAAAA ATGAAAAATGTTAAA TERM 399 437459 - 437449 - T 73 -4 -5.49729 | opp_overlap 437449, overlap 437437 AATTATTTAAAAAAA TATG TGA CATA TTTCGTATAAATATT mutS 439887 - 437485 - | DNA mismatch repair protein TERM 400 438395 - 438407 + g 83 -4.9 -5.73339 | TATCTAACACAATGC TTCAA AGT TTGAA TTTTTTTATAATTAT TERM 401 438999 - 439020 + g 70 -2.3 -5.40474 | TAGCCGTATTATCAA GAATAGACA ACAA TGTATGTTC TTTTTTTCCAGAAAT TERM 402 439098 - 439083 - G 72 -4.8 -4.91712 | opp_overlap 439085 CTGAATTCATAAAAA TATGAT TACA ATCATA CCTTACTTTTATTGA dsbA 440143 - 440778 + | thiol:disulfide interchange protein DsbA precursor polA 440900 - 441808 + | putative 5'-3' exonuclease TERM 403 442007 - 441989 - T 75 -7.6 -4.07746 | opp_overlap 441992, overlap 441992 CTCCTAAAAACACAA CAATATTT TTA AAATATTG TAACATAAATCAAAT engB 442834 - 442124 - | putative GTP-binding protein EngB typA 442992 - 444842 + | GTP-binding protein TYPA/BIPA gmk 445510 - 444887 - | guanylate kinase thyA 446432 - 445638 - | thymidylate synthase lgt 447304 - 446453 - | prolipoprotein diacylglyceryl transferase TERM 404 447351 - 447339 - R 73 -3.5 -5.69473 | TATATTATAAAAAAA TTTAT TGT ATAAA ACTGTTTAACTAAAA lysA 448718 - 447462 - | diaminopimelate decarboxylase TERM 405 448681 - 448694 + g 91 -2.4 -6.34424 | TTTAAAATATCATTA CAAC TAAAAC GTTG TTTTTTTTTTAACAA lysS 450346 - 448844 - | lysyl-tRNA synthetase TERM 406 449855 - 449839 - G 75 -5.9 -4.67234 | opp_overlap 449839 ACCTAATTTTAAAAA TAGAACA TAA TGTCCTA TTACTAATAAGATCT TERM 407 449992 - 450004 + g 70 -4.9 -4.70319 | ACAACTCTCCAGTTC TTGTT TTA AACAA TTTTCCTTTTGCTCC prfB 451420 - 450407 - | peptide chain release factor 2 TERM 408 451368 - 451353 - G 73 -7.6 -3.72695 | opp_overlap 451343 451353 ATTTTTTTTATTAAA CTTGGA TGTT TCCAAG TTTCAGGAAGTTTTA TERM 409 451353 - 451368 + g 71 -7.6 -3.57309 | opp_overlap 451353, overlap 451343 ATTTTTTTTATTAAA CTTGGA TGTT TCCAAG TTTCAGGAAGTTTTA TERM 410 452552 - 452542 - g 91 -2.6 -6.41805 | CGAGCAAAAAAAAAA TAAA AAC TTTA GTTCATGCGGATGGA ygfZ 451745 - 452701 + | hypothetical protein yleA 452828 - 454165 + | hypothetical protein ybeY 454364 - 454828 + | hypothetical protein TERM 411 455580 - 455552 - g 77 -6.2 -4.77567 | opp_overlap 455560, overlap 455560 ACTTTTATAATAAAA TCATTAACTTCT ATTAA AGAATTTAATGA AACTTTTAATACCAA corC 454913 - 455761 + | magnesium and cobalt efflux protein CorC TERM 412 456935 - 456953 + G 71 -8.2 -3.16068 | opp_overlap 456937, overlap 456929 GGAAAAAACGTATTA CATCCTAT GGG ATGGGATG CTTTTGGATTACCAG TERM 413 458483 - 458459 - g 70 -2.2 -5.50774 | overlap 458462 CACAACAAACAAAAA CAATGGATTT CAGCT AAATCCATAA CAATAAAATATGATT TERM 414 458480 - 458462 - g 77 -6.1 -4.78345 | overlap 458459 AACAAACAAAAACAA TGGATTT CAGCT AAATCCA TAACAATAAAATATG TERM 415 458507 - 458492 - g 72 -4.8 -4.95547 | overlap 458487 TCCATAACAATAAAA TATGAT TCTA ATCATA AAATTCAATCACATT TERM 416 459187 - 459175 - g 74 -4.9 -5.14563 | CCTTGCATTAAAAAA TTCTT CTC AAGAA AAAATATTAGAAATA TERM 417 459202 - 459192 - g 71 -2.6 -5.4505 | opp_overlap 459192 CTTCTCAAGAAAAAA TATT AGA AATA ATTTTGAATGAAAAC leuS 456713 - 459298 + | leucyl-tRNA synthetase holA 459348 - 460346 + | DNA polymerase III delta subunit sirA 460933 - 461172 + | SirA protein TERM 418 461328 - 461284 - T 93 -9 -5.26119 | opp_overlap 461287, overlap 461285 TTTTCAAAAATAAAA TTATCACTAACAATTATT AACGTCACA AATAATTGTTAGTGATAT ATAAATTTAAAATCT TERM 419 461327 - 461285 - T 100 -12.5 -3.74587 | opp_overlap 461287, overlap 461284 TTTCAAAAATAAAAT TATCACTAACAATTATT AACGTCACA AATAATTGTTAGTGATA TATAAATTTAAAATC TERM 420 461287 - 461325 + T 86 -10.7 -2.98088 | opp_overlap 461285 461284 TCAAAAATAAAATTA TCACTAACAATTATT AACGTCACA AATAATTGTTAGTGA TATATAAATTTAAAA asd 462499 - 461390 - | aspartate-semialdehyde dehydrogenase yhgN 463056 - 463655 + | dITP- and XTP- hydrolyzing protein pgk 463907 - 465088 + | phosphoglycerate kinase TERM 421 465482 - 465471 - g 73 -4.4 -5.08601 | CCATTGCAATAAAAA CATG CTTC CATG GATTGATGAATTAAT TERM 422 465972 - 465958 - g 77 -2.1 -5.82281 | AAAGATATAAAAAAA TCCAT TAAGT ACGGA GTCATAAAAATGAAT fba 465127 - 466206 + | fructose-bisphosphate aldolase TERM 423 466465 - 466487 + G 71 -2.8 -5.55664 | opp_overlap 466469, overlap 466466 466469 ATTAATTTAATTTCA TCAATTATTA TAT TAATAATAGG TTTTTTTGCTGCTAA yggB 466366 - 467211 + | hypothetical protein TERM 424 467457 - 467427 - g 71 -7.2 -3.84451 | opp_overlap 467430 467432, overlap 467429 TTTTTTAAACTCAAA CATTTTATTTTAAA TAT TTTAAAACAAAATA CTCCTAAATTATATT TERM 425 467455 - 467429 - g 70 -7.6 -3.50832 | opp_overlap 467430 467432, overlap 467427 TTTTAAACTCAAACA TTTTATTTTAAA TAT TTTAAAACAAAA TACTCCTAAATTATA TERM 426 469905 - 469891 - g 75 -7.2 -4.10552 | overlap 469897 AATATTATAAAAACA TAGGAA TTA TTCCTA ATAACAATATTGGAA TERM 427 470528 - 470517 - g 78 -4.4 -5.43514 | AAAACAACTAAAAAA TGGT TAAC ACCA ATACTAAAAAATATT recC 467229 - 470564 + | exodeoxyribonuclease V gamma chain TERM 428 471835 - 471818 - g 86 -5.7 -5.49579 | TTATAAAAAAGAAAA CTTATTA ATTC TAATAAG TGATCCCAAACAAGC recB 470604 - 474146 + | exodeoxyribonuclease V beta chain TERM 429 475297 - 475275 - g 100 -10.8 -6.13 | opp_overlap 475273 AGATTTAAAAAAAAA TCAGATATTT TTA AAATATCTGA AATGCTTACAAAAAA recD 474168 - 476024 + | exodeoxyribonuclease V alpha chain TERM 430 476655 - 476641 - g 100 -4.4 -6.34616 | opp_overlap 476643 476647, overlap 476643 476647 TCAAAACAAAAAAAA TATAAT GCT ATTATA GCTTTAGGTACTATT ribH 476422 - 476901 + | 6,7-dimethyl-8-ribityllumazine synthase ribD 476991 - 478109 + | diaminohydroxyphosphoribosylaminopyrimidine deaminase TERM 431 478408 - 478394 - g 77 -2.9 -5.66926 | TTAAAAAAAATAAAA CTATT AATGA AATAG ACCAAATATATTTTT nusB 478273 - 478707 + | transcription antitermination protein NusB TERM 432 479649 - 479632 - T 74 -2.1 -6.08563 | gap 1, opp_overlap 479633, overlap 479633 479635 AATACATAAAAAAAA TTACCAAA AAC TTTGG-AA TAATTAAAAATTTTT TERM 433 480047 - 480026 - T 70 -5.9 -4.59982 | opp_overlap 480026 CGAGAATTAAATAAA TGTTTGTGT AAAA ACACCAACA TTTTTAGAAATAGAC TERM 434 480026 - 480047 + T 70 -5.9 -4.59773 | opp_overlap 480026 CGAGAATTAAATAAA TGTTTGTGT AAAA ACACCAACA TTTTTAGAAATAGAC yajR 482749 - 481565 - | putative transport protein TERM 435 482953 - 482942 - g 70 -3 -5.22794 | overlap 482934 AGAATTAGCAAAAAA GATT GCAA AATC AGAATTTATAAACAT yccK 482901 - 483185 + | putative sulfite reductase subunit protein cyoE 484107 - 483241 - | protoheme IX farnesyltransferase cyoD 484397 - 484095 - | cytochrome O ubiquinol oxidase protein CyoD cyoC 485007 - 484423 - | cytochrome O ubiquinol oxidase subunit III cyoB 487027 - 485048 - | ubiquinol oxidase polypeptide I TERM 436 485698 - 485685 - G 70 -5.3 -4.50976 | opp_overlap 485695, overlap 485693 TCCGATAGCATAAAA CCAAA TAAT TTTGG GAACCAATAAGTTAT TERM 437 486118 - 486108 - G 75 -5.4 -4.91109 | TCTTTACTAGAAAAA GTAG CTA CTAC TTCAGAAAAAATTCC TERM 438 486704 - 486688 - G 86 -5.9 -5.53991 | TAGCCACGAAAAAAA TCATGAT AAC ACCATGA GCTGTAAATATTTGA cyoA 487977 - 487099 - | ubiquinol oxidase polypeptide II precursor TERM 439 487790 - 487773 - G 91 -2.7 -6.34616 | overlap 487775 GTAAAACAAAAAAAA TAGTCAT AAAA ATGACTG GAATTATTATTAATA TERM 440 487788 - 487775 - G 73 -5.3 -4.77908 | overlap 487773 AAAACAAAAAAAATA GTCAT AAAA ATGAC TGGAATTATTATTAA TERM 441 488248 - 488232 - H 76 -8.1 -3.8613 | TCTAAACACGAATAA TGCTATA TTA TATAGCA TACGAAGTAAATATT bolA 488308 - 488625 + | BolA clpP 489272 - 489889 + | ATP-dependent Clp protease proteolytic subunit TERM 442 490158 - 490134 - g 76 -7.3 -4.33214 | opp_overlap 490141 AGAAGAAAATAACAA TTTATCATCAT ATT ATGATGTTAAA AAAAAAATACCTACA TERM 443 490781 - 490771 - g 74 -4 -5.22104 | GAAAAAAGAACAAAA TTAG GTA CTAA AATTGGGTTTAATGC clpX 489973 - 491259 + | ATP-dependent protease ATP-binding subunit TERM 444 491279 - 491293 + F 70 -5.8 -4.52502 | CATAACTATCTAGTT TCTAAT AAG ATTAGA TTATTTATTTTTAAG TERM 445 491397 - 491421 + F 72 -8.9 -2.72344 | opp_overlap 491400, overlap 491400 GTGGTCTACTCAGTA TAATTTTTTAA TTT TTAAAAAATTA TCATTGAAACTAAGA TERM 446 491899 - 491888 - g 81 -3 -5.83226 | opp_overlap 491888 AATTCAATAAAAAAA TTTC TCCT GAAA TTTTAAATTCATTAA TERM 447 493166 - 493154 - g 82 -2.7 -5.94743 | TAAAAAAAATAAAAA TTACC ACT GATAA TTTACACGATTATCT TERM 448 493428 - 493416 - g 90 -3.5 -5.95166 | GGGAATTAAAAAAAA TTTTT ACG AAAAA AATGATATTCACGTT lon 491446 - 493788 + | ATP-dependent protease La TERM 449 494871 - 494887 + G 75 -5.3 -4.95484 | opp_overlap 494869 494871 AAAATTATTAAAATA TATTATT AAC AATAATA TTTTATTTCATAATA ppiD 493897 - 495432 + | peptidyl-prolyl cis-trans isomerase D TERM 450 495945 - 495935 - g 74 -4 -5.21506 | ACAAGAATACAAAAA CTAT ACC ATAG CAATATTCTTATTAA TERM 451 496894 - 496872 - g 76 -8.6 -3.68047 | overlap 496870 AAATATAAAAATATA TCCAATATTC CAG GAATATTAGA AGTTAAAATTAATTA mdlA 495885 - 497624 + | putative ABC transporter TERM 452 499004 - 498985 - g 77 -2.2 -5.85737 | overlap 498986 ATATCAACAAAAAAA GTTTTAAA AATT TTAAAAAC AATAAAACTAATACA mdlB 497653 - 499389 + | putative ATP transporter TERM 453 500651 - 500641 - g 73 -5.4 -4.6856 | overlap 500643 TAAATATTCTAAAAA CATG CAA CATG CAATACAAAAAATAG dnaX 499709 - 500821 + | DNA polymerase III subunit gamma ybaB 501046 - 501378 + | hypothetical protein htpG 501507 - 503387 + | heat shock protein 90 adk 503441 - 504088 + | adenylate kinase TERM 454 504369 - 504351 - g 82 -5.4 -5.44119 | overlap 504364 CGCATTGCAAAAAAA TTAGAATT CAA AATCCTAA AACAAGTTAATTATA TERM 455 504398 - 504364 - g 74 -6.6 -4.33754 | overlap 504351 AATTAGAATTCAAAA TCCTAAAACAAGTTAA TTA TAAACTTTCTTTAGGA CAAAGACCACCCGGT TERM 456 504938 - 504949 + G 80 -5.8 -5.02074 | overlap 504947 AATAGTTATAGCCAT TGGG CACG CCCA TTTTTTAAAAGGTAC TERM 457 505092 - 505078 - g 78 -10 -2.72012 | overlap 505075 505080 AATCATCATACATTA CACCAG TCC CTGGTG GAGTAGGTCCTATGA folD 504309 - 505172 + | methylenetetrahydrofolate dehydrogenase cysS 506599 - 505190 - | cysteinyl-tRNA synthetase TERM 458 506171 - 506189 + g 84 -6 -5.33405 | CATAATATCACCATT GCATGC TACATAC GCATGC TTTTTATTTAATAAA ybeD 507002 - 507268 + | hypothetical protein TERM 459 507354 - 507321 - T 77 -5.3 -5.32599 | overlap 507322 GACAAAATATAAAAA TGTAATGCAGCTTTA TTAC TAGCGCTGCATTACG ACATTAAAATATTTT TERM 460 507353 - 507322 - T 80 -8.8 -3.77119 | overlap 507321 ACAAAATATAAAAAT GTAATGCAGCTTTA TTAC TAGCGCTGCATTAC GACATTAAAATATTT cspE 507598 - 507389 - | cold shock protein CspE TERM 461 507880 - 507862 - R 100 -6 -6.35605 | opp_overlap 507862 CAATACAAAAAAAAA TCCGAATT TAG ATTTCGGA TTTTTGAAACCTGGT TERM 462 507862 - 507880 + r 70 -6 -4.58663 | opp_overlap 507862 CAATACAAAAAAAAA TCCGAATT TAG ATTTCGGA TTTTTGAAACCTGGT TERM 463 509729 - 509743 + r 70 -5.7 -4.56607 | TAGTATTTCGGCGAA CAGGT TTTTC ACCTG TTTTATCGTTACTCA aroE 512313 - 511465 - | shikimate 5-dehydrogenase TERM 464 511831 - 511814 - G 75 -7.1 -4.13014 | opp_overlap 511813 CCTACATTTTTAAAA TCTTCAA CTAG TTGAAGA GCTCTTGTTATTGTT TERM 465 512243 - 512214 - G 72 -6.7 -4.10188 | gap 1, opp_overlap 512214 TATATTCATAAACAA TTC-CAGTTTGTTT TGA AAACAAACTATGAA TATATGGTGATTGAG yrdC 512866 - 512306 - | hypothetical protein def 513039 - 513521 + | polypeptide deformylase fmt 513523 - 514494 + | methionyl-tRNA formyltransferase TERM 466 514570 - 514585 + T 70 -4.8 -5.00616 | opp_overlap 514582, overlap 514583 TTTATCTTATTATTA CAAATT TATT AATTTG TTTTTTAACAAACAA TERM 467 515239 - 515216 - T 70 -3.4 -5.67967 | gap 1, opp_overlap 515219 515220, overlap 515220 ATTACTATAAAAAAA TAAA-CAAAAA CTG TTTTTGCTTTA TGTAATGAAATTCTG TERM 468 515234 - 515220 - T 77 -5.8 -5.27709 | opp_overlap 515219 515220, overlap 515216 CTATAAAAAAATAAA CAAAAA CTG TTTTTG CTTTATGTAATGAAA rplQ 516147 - 515758 - | 50S ribosomal protein L17 rpoA 517194 - 516199 - | DNA-directed RNA polymerase subunit alpha TERM 469 516275 - 516294 + g 78 -4.4 -5.54894 | opp_overlap 516275 TTTGCTGCTAATACA TCTTTAAT TTCA GTTAAAGA TTTTTTTCCTAAATT rpsD 517843 - 517223 - | 30S ribosomal protein S4 TERM 470 517539 - 517527 - G 74 -6.3 -4.51174 | CGAGTAGAACCAAAA CCTAT TCT ATAGG TGACATTATCTAAAC rpsK 518281 - 517892 - | 30S ribosomal protein S11 rpsM 518656 - 518300 - | 30S ribosomal protein S13 rpmJ 518915 - 518799 - | 50S ribosomal protein L36 secY 520269 - 518944 - | preprotein translocase subunit SecY TERM 471 519083 - 519073 - G 77 -5.4 -5.14626 | ACCACCAAAATAAAA TGGA ACA TCCA TAAAAAAACGCATAA rplO 520725 - 520282 - | 50S ribosomal protein L15 TERM 472 520542 - 520532 - G 77 -5.4 -5.18866 | overlap 520527 TTTAAAGAAACAAAA CCAA ATT TTGG AATACGCCTATAAAG rpmD 520912 - 520736 - | 50S ribosomal protein L30 rpsE 521466 - 520909 - | 30S ribosomal protein S5 TERM 473 521457 - 521473 + gr 84 -10.9 -2.64155 | overlap 521454 521453 TTAAGCCCAGATTCT CTTGCAG CAT CTGCAAG TGCCTTTACCCGACC rplR 521800 - 521435 - | 50S ribosomal protein L18 TERM 474 521757 - 521773 + gr 95 -2.1 -6.5058 | AAGCGTGTTCTTGCA GCTCTAC GAA GACGAGC TTTTTTTTTATTTAT rplF 522341 - 521802 - | 50S ribosomal protein L6 TERM 475 521986 - 521975 - G 71 -4.4 -4.83615 | TACTTTCTACAAAAA TACC AAAA GGTA AAACGTATTCAATAA rpsH 522748 - 522356 - | 30S ribosomal protein S8 rpsN 523090 - 522785 - | 30S ribosomal protein S14 TERM 476 523026 - 523053 + g 71 -4.4 -4.93365 | AAATGTTCTCTCCTA GAATAAAATT TTTTTGCT AATTTTATTC TTTTTACTTCTCGAG rplE 523654 - 523115 - | 50S ribosomal protein L5 rplX 523984 - 523670 - | ribosomal protein L24 rplN 524365 - 523997 - | 50S ribosomal protein L14 rpsQ 524778 - 524521 - | 30S ribosomal protein S17 rpmC 524968 - 524771 - | 50S ribosomal protein L29 rplP 525378 - 524968 - | 50S ribosomal protein L16 rpsC 526098 - 525391 - | 30S ribosomal protein S3 rplV 526463 - 526104 - | 50S ribosomal protein L22 rpsS 526768 - 526490 - | 30S ribosomal protein S19 rplB 527609 - 526788 - | 50S ribosomal protein L2 TERM 477 527216 - 527233 + g 71 -2.7 -5.38958 | TAGGAATATTTTTCA TAGGTAA CGCA TTTCCTA TTTTTATTTCTGCGT rplW 527952 - 527650 - | 50S ribosomal protein L23 rplD 528572 - 527964 - | 50S ribosomal protein L4 rplC 529218 - 528574 - | 50S ribosomal protein L3 TERM 478 529034 - 529050 + g 77 -3.1 -5.61596 | overlap 529036 TGACCTATTTCCGGC TTTAATA ATT TATTAGA TTTTTTTATACCAGT rpsJ 529568 - 529254 - | 30S ribosomal protein S10 TERM 479 530020 - 529965 - R 76 -8.8 -3.39449 | gap 1, opp_overlap 529974 529975, overlap 529966 529975 TAATACCTTAAAAAT CTTAAAAAAATCAAGAAAAGAA-CTTA TTC TATGCTTCTTTTCTTGACTTTATTAAA TTAATCATATATTTT TERM 480 530019 - 529966 - R 81 -10.1 -2.62946 | gap 1, opp_overlap 529974 529975, overlap 529965 529975 AATACCTTAAAAATC TTAAAAAAATCAAGAAAAGAA-CTTA TTC TATGCTTCTTTTCTTGACTTTATTAA ATTAATCATATATTT TERM 481 529975 - 530010 + r 74 -8.6 -3.15087 | gap 1, opp_overlap 529966 529965 529975, overlap 529974 AAAATCTTAAAAAAA TCAAGAAAAGAA-CTTA TTC TATGCTTCTTTTCTTGA CTTTATTAAATTAAT TERM 482 530010 - 529975 - R 100 -8.6 -5.51165 | gap 1, opp_overlap 529975 529974, overlap 529966 529965 AAAATCTTAAAAAAA TCAAGAAAAGAA-CTTA TTC TATGCTTCTTTTCTTGA CTTTATTAAATTAAT tuf 531246 - 530062 - | elongation factor Tu fusA 533442 - 531310 - | elongation factor G rpsG 534011 - 533541 - | 30S ribosomal protein S7 TERM 483 534057 - 534036 - R 75 -6.1 -4.9792 | TACCCCACATAAAAA TTTTTATTA AATT TAATAAAAA ATAAAATAAATTATA rpsL 534450 - 534079 - | 30S ribosomal protein S12 yheL 534812 - 534525 - | tRNA 2-thiouridine synthesizing protein B yheM 535188 - 534829 - | hypothetical protein yheN 535596 - 535204 - | hypothetical protein fkpA 536431 - 535676 - | FKBP-type peptidyl-prolyl cis-trans isomerase FkpA TERM 484 535770 - 535798 + g 84 -4 -5.82281 | gap 1 CCATATGCTAATTTC GGTGGTATTACTA ATTT TATTAA-ACCACC TTTTTTTATATATTT yhfC 537013 - 538179 + | hypothetical protein trpS 539177 - 538176 - | tryptophanyl-tRNA synthetase rpe 539994 - 539308 - | ribulose-phosphate 3-epimerase TERM 485 539548 - 539563 + g 80 -9 -3.55801 | TGGAATAAACTTTTG TCCAGG AAAT CCTGGA TTTACAGACATTAAT aroB 541166 - 540099 - | 3-dehydroquinate synthase TERM 486 540745 - 540715 - G 76 -7.1 -4.40561 | overlap 540716 GGTTGCCAAAAAGAA CCAATCATATTTT TTCCC AAAACATGATTGA CAGAAGTTTTACCAC TERM 487 540744 - 540716 - G 74 -8.4 -3.23855 | overlap 540715 GTTGCCAAAAAGAAC CAATCATATTTT TTCCC AAAACATGATTG ACAGAAGTTTTACCA aroK 541741 - 541217 - | shikimate kinase deoD 543440 - 542724 - | purine nucleoside phosphorylase TERM 488 543059 - 543049 - G 82 -5.4 -5.43974 | AAAATCAAATAAAAA TCAG CAA CTGA AGAAAAATCGTTATC deoB 544703 - 543477 - | phosphopentomutase prfC 546459 - 544861 - | peptide chain release factor 3 TERM 489 545700 - 545654 - G 82 -6.1 -5.14563 | CCTTGCATTAAAAAA TTAACACCAAAATTTTTTAGT GCGCT ACCAAAAAAAATTGGGGTTAA ATCACTCTCTAAAAA TERM 490 546230 - 546264 + g 77 -2.2 -5.80951 | overlap 546220 AAATATCTATTATAT GGAATTTGAATAACTG ATG TAGTAATAGAAATTCC TTTTTTCTTTTCAAT TERM 491 547219 - 547249 + r 71 -7.2 -3.83561 | opp_overlap 547224, overlap 547218 547224 TTACAATGACATTTT CAAAATTTATTATT TTA AATAATAAATTTTA CTTTTTTTAAAAAAA TERM 492 547224 - 547244 + r 81 -7.1 -4.94243 | opp_overlap 547224, overlap 547219 547218 ATGACATTTTCAAAA TTTATTATT TTA AATAATAAA TTTTACTTTTTTTAA TERM 493 547244 - 547224 - R 70 -7.1 -4.13282 | opp_overlap 547224 547219 547218 ATGACATTTTCAAAA TTTATTATT TTA AATAATAAA TTTTACTTTTTTTAA yhgI 548141 - 547566 - | YhgI TERM 494 547972 - 547955 - G 75 -7.1 -4.12532 | opp_overlap 547958, overlap 547958 GCTTGTATACATAAA CAATGAA CTTA TTCATTG TAAACGCAACATCTA TERM 495 548173 - 548163 - H 74 -2.6 -6.07627 | opp_overlap 548170, overlap 548170 ATCTCCAAAAAAAAA TAAA ATT TTTA AACTAAATATCTAAA bioH 548270 - 549067 + | putative biotin biosynthesis protein ssb 549620 - 549120 - | single-strand binding protein TERM 496 550665 - 550651 - g 95 -2.8 -6.58542 | overlap 550652 TGTTAAAAAAAAAAA TCTTGA TAA TCAAGT CGAAAAACTGATTGA TERM 497 550664 - 550652 - g 74 -6.3 -4.52685 | overlap 550651 GTTAAAAAAAAAAAT CTTGA TAA TCAAG TCGAAAAACTGATTG TERM 498 550750 - 550779 + G 74 -2.3 -5.60864 | gap 1, opp_overlap 550755, overlap 550754 550755 TAATGAACAATGGGA TTATATTTCCGAAA AAA TCTCGGAAA-ATGA TTTTTTTAGTCTATC TERM 499 550775 - 550755 - g 74 -9.1 -2.81738 | opp_overlap 550755 550754 550750 AACAATGGGATTATA TTTCCGAAA AAA TCTCGGAAA ATGATTTTTTTAGTC dnaB 550628 - 552019 + | replicative DNA helicase TERM 500 552764 - 552740 - g 70 -5.7 -4.28111 | overlap 552744 TACATCATTAATAAA CCTAGTAGCTT ACG AAGCTACAATG AAAAATTATTTACTA TERM 501 552760 - 552744 - g 77 -9.5 -2.77283 | overlap 552740 TCATTAATAAACCTA GTAGCTT ACG AAGCTAC AATGAAAAATTATTT gshB 552392 - 553366 + | glutathione synthetase TERM 502 553607 - 553597 - g 82 -2.6 -6.02919 | TCATAAATAAAAAAA TAAA AAA TTTA ACAATACAAAAAATT yqgE 553464 - 554033 + | hypothetical protein yqgF 554045 - 554458 + | hypothetical protein leuA 555952 - 554780 - | 2-isopropylmalate synthase TERM 503 555163 - 555196 + g 80 -5.6 -5.18715 | TACTGTAAATTTCTT GATATTTTATATTT GTTTTA AAATTTAAAATATC TTTTCTTATTTTTAT TERM 504 555981 - 555969 - R 77 -6.3 -5.02074 | overlap 555973 TCATTGTCCAAAAAA TGCAT TTT ATGCA ATAAAACATAGTATT TERM 505 556199 - 556179 - R 80 -4.2 -6.10295 | overlap 556190 556191 CGAACATAAAAAAAA TTTAAAAA TCATT TTTTTAAA AATTCAGGAATTAAA leuD 556792 - 556187 - | 3-isopropylmalate dehydratase small subunit leuC 558231 - 556816 - | isopropylmalate isomerase large subunit leuB 559328 - 558228 - | 3-isopropylmalate dehydrogenase TERM 506 559369 - 559355 - H 72 -4.4 -5.31456 | opp_overlap 559368, overlap 559368 TTAAGTCACAAAAAA TATTTT AAA AAAATA AACATTTTAATTATA TERM 507 559879 - 559867 - g 79 -4.9 -5.43553 | ACTCAAAAAATAAAA TTACT AGC AGTAA GTAAAAATCGTTCAG TERM 508 560250 - 560264 + G 81 -8.6 -4.11692 | opp_overlap 560252 AAATTTACGCGGAAT TATGGC TAT GCCATA TTTTAAAAATACATA yggS 559777 - 560448 + | hypothetical protein TERM 509 560909 - 560878 - g 91 -4 -6.11644 | gap 1, opp_overlap 560878 560881 TCAGCGAAAAAAAAA TCT-TTTATTACAAA AAA TTTGGAATAAATAGA TTTTCCATAAGAATT yggW 560559 - 561683 + | putative oxidase yggH 562502 - 561774 - | methyltransferase mutY 562662 - 563717 + | A/G-specific adenine glycosylase yggX 563710 - 563973 + | hypothetical protein TERM 510 563980 - 563998 + F 72 -7.6 -3.71794 | opp_overlap 563980 563982 563997 CAACTTTAATAATGA TACTTATT TGT AATAAGTA TTTAAATCATTAAAT TERM 511 564654 - 564642 - g 95 -3.5 -6.32017 | AAGAAATAAAAAAAA TTTTT CCA AAAAA AATTCAAATTATTGA TERM 512 564820 - 564800 - g 71 -2.7 -5.53991 | overlap 564802 TATCTATTAAAAAAA TATAATTTT AAA AAAATTAAA GAATTAAATACATGA murI 564044 - 564835 + | glutamate racemase sbcB 566337 - 564892 - | exonuclease I TERM 513 566601 - 566584 - H 72 -4.3 -5.3671 | overlap 566571 AATACAATTAAAAAA TTATATA TTTA TATATAA AAATATTATGAAATA pyrE 566908 - 567528 + | orotate phosphoribosyltransferase dut 568008 - 567550 - | deoxyuridine 5'-triphosphate nucleotidohydrolase rplI 569375 - 568911 - | 50S ribosomal protein L9 rpsR 569643 - 569416 - | 30S ribosomal protein S18 TERM 514 569502 - 569528 + g 73 -5.3 -4.72486 | gap 1 GTTGATATCGCGCAC TTGTTCC-AGTA ATTC TGCTAGGAACAA TTTTTCCACTTTCTG TERM 515 569632 - 569617 - G 77 -6.2 -4.68539 | overlap 569609 AGTAAAACGACAAAA TTTTCG ACGA CGAAAA TAACGAACCATAACC rpsF 570122 - 569763 - | 30S ribosomal protein S6 TERM 516 570632 - 570622 - R 72 -2.6 -5.97575 | AACCTACAAAAAAAA TTTA ATA TAAA ACAAAACTATAACTA purA 572047 - 570758 - | adenylosuccinate synthetase TERM 517 571228 - 571206 - G 73 -9.2 -2.6563 | overlap 571202 TCTCCGAACAACTCA GTAGGAAACG GTC CATTTCCCAC TCGGGTAGAATAAGC TERM 518 571597 - 571585 - G 71 -2.7 -5.39407 | GAGAAAAAAAAGAAA GATCT AAC AAATC ACCTACGCATAGACC TERM 519 571767 - 571756 - G 71 -4.4 -4.9725 | ATTCTGATATAAAAA TTCG TTTT CGAA TACATAAATTTTCTG hflC 573102 - 572122 - | hypothetical protein TERM 520 572988 - 572970 - G 76 -6.8 -4.61873 | opp_overlap 572972 572981, overlap 572972 GCTTATAAACCAAAA CATGATGA TTA TCATCATA TGAAATTTTTCCAAA TERM 521 572986 - 572972 - G 72 -7.2 -3.91676 | opp_overlap 572972 572981, overlap 572970 TTATAAACCAAAACA TGATGA TTA TCATCA TATGAAATTTTTCCA hflK 574359 - 573106 - | HflK TERM 522 573696 - 573708 + g 72 -6.3 -4.29369 | CTGAAATAACTATTC CCATA TGA TATGG TTTAATTATTTTTTG miaA 575600 - 574629 - | tRNA delta(2)-isopentenylpyrophosphate transferase mutL 577377 - 575584 - | DNA mismatch repair protein MutL TERM 523 575992 - 575978 - G 78 -4.4 -5.42259 | opp_overlap 575964 TTATTTTTAAAAAAA TAAAAA TAT TTTTTA CGTAATTTTTTTATT TERM 524 576435 - 576449 + g 86 -4.4 -5.75945 | GAATTAAACGAATGT TAATAA TCT TTATTA TTTTTTTTGCCGGAT mtlD 578653 - 577481 - | mannitol-1-phosphate 5-dehydrogenase mtlA 580688 - 578766 - | PTS system mannitol-specific IIABC component TERM 525 579329 - 579292 - G 72 -7.3 -3.91084 | opp_overlap 579268 579291 579288, overlap 579294 TTATTTTCAACTAAA TATTTAGATAATTCATT ATAA AATGCATTATCTAAAAA ACTATTTAAAGACAA TERM 526 579327 - 579294 - G 86 -9.9 -3.54414 | opp_overlap 579268 579291 579288, overlap 579292 ATTTTCAACTAAATA TTTAGATAATTCATT ATAA AATGCATTATCTAAA AAACTATTTAAAGAC pgi 582863 - 581205 - | glucose-6-phosphate isomerase orn 583534 - 584016 + | oligoribonuclease TERM 527 584206 - 584190 - f 77 -9.5 -2.62616 | overlap 584193 TCAGTTGGTAGAGTA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCAA TERM 528 584578 - 584554 - f 95 -6.7 -6.06529 | GATATATAAAAAAAA TTTTCTAAATT CTA AATTTAAAAAA CTAAACAAACAGTTT TERM 529 585257 - 585247 - g 71 -2.6 -5.46657 | CACTTGAACAAAAAA TTTT ATC AAAA CCTTATTTCAAAATC amiB 584674 - 585327 + | putative N-acetylmuramoyl-L-alanine amidase TERM 530 585554 - 585534 - T 86 -8.5 -5.03713 | opp_overlap 585543, overlap 585524 585543 AACAATTAAATAAAA TTTAAAAAC CTT GTTTTTAAA AAAAAAGTAATATAT rpmE 585789 - 585580 - | 50S ribosomal protein L31 TERM 531 586223 - 586209 - H 100 -5.8 -6.50278 | opp_overlap 586209 AAACCAAAAAAAAAA TTACTA AAA TAGTAA TTATATTTATAATAT hslV 586694 - 587224 + | ATP-dependent protease peptidase subunit hslU 587237 - 588571 + | ATP-dependent protease ATP-binding subunit TERM 532 588646 - 588604 - T 100 -16 -4.00486 | opp_overlap 588609 588633, overlap 588609 588633 TTCACAATACAATAA TAAAATCTTTCCTATCTTTA GAA TAAAGACAGGAAAGATTTAA AAAACTTCCTGTTTA TERM 533 588641 - 588609 - T 100 -15.9 -4.99312 | opp_overlap 588609 588633, overlap 588604 588633 AATACAATAATAAAA TCTTTCCTATCTTTA GAA TAAAGACAGGAAAGA TTTAAAAAACTTCCT TERM 534 588609 - 588641 + T 100 -13.7 -3.55801 | opp_overlap 588609 588604 588633, overlap 588633 AATACAATAATAAAA TCTTTCCTATCTTTA GAA TAAAGACAGGAAAGA TTTAAAAAACTTCCT trpG 589611 - 589033 - | anthranilate synthase component II trpE 591179 - 589611 - | anthranilate synthase component I TERM 535 589741 - 589718 - G 71 -8.2 -3.19511 | opp_overlap 589718 589730, overlap 589716 GTACAGAATCCAATA CTATTCCAGC TCCA GCTTGAATAG TTGCTATTTTATTTT TERM 536 589718 - 589741 + g 74 -8.2 -3.64871 | opp_overlap 589718 589716, overlap 589730 GTACAGAATCCAATA CTATTCCAGC TCCA GCTTGAATAG TTGCTATTTTATTTT TERM 537 591551 - 591522 - H 91 -4.5 -6.50278 | overlap 591525 AAATTAAAAAAAAAA TAATATTAACTAA GAAT TTAGCTAATATAA AATAACACTTACAAT TERM 538 591548 - 591525 - H 80 -6.2 -5.20756 | overlap 591522 TTAAAAAAAAAATAA TATTAACTAA GAAT TTAGCTAATA TAAAATAACACTTAC fpr 591689 - 592438 + | ferredoxin-NADP reductase yjeA 593458 - 592490 - | lysyl-tRNA synthetase TERM 539 593888 - 593858 - R 95 -10.7 -4.84359 | TTATTCTTATAAAAA TGGAGTATATAAA ATTAA TCTATATACTCCA CGTAAACAAAATGTT yba3 595202 - 594006 - | hypothetical protein TERM 540 594493 - 594505 + g 72 -4.9 -4.91429 | GTAGACACTTGTTGA TTATC ACC GATAA TTTTATTTAAACTTT TERM 541 595674 - 595632 - R 100 -17 -2.83345 | opp_overlap 595635 595643, overlap 595635 595643 GTGATATATCAAGTA TAATTTTAAAATAAAAATAA TTG TTATTTTTATTTTAAAATTA TTAACACTAACAATT TERM 542 595635 - 595671 + r 100 -14.3 -3.63515 | opp_overlap 595632 595635 595643, overlap 595643 ATATATCAAGTATAA TTTTAAAATAAAAATAA TTG TTATTTTTATTTTAAAA TTATTAACACTAACA TERM 543 595671 - 595635 - R 100 -14.3 -3.55889 | opp_overlap 595635 595643, overlap 595632 595643 ATATATCAAGTATAA TTTTAAAATAAAAATAA TTG TTATTTTTATTTTAAAA TTATTAACACTAACA TERM 544 595663 - 595643 - R 72 -7.1 -4.22338 | opp_overlap 595635 595643, overlap 595635 595632 AGTATAATTTTAAAA TAAAAATAA TTG TTATTTTTA TTTTAAAATTATTAA TERM 545 595643 - 595663 + r 72 -7.1 -4.24123 | opp_overlap 595643 595635 595632, overlap 595635 AGTATAATTTTAAAA TAAAAATAA TTG TTATTTTTA TTTTAAAATTATTAA uspA 596131 - 595703 - | universal stress protein TERM 546 596266 - 596210 - R 87 -10.9 -3.60475 | gap 1, overlap 596214 AACGGTTATTTTAAA TTTATTTTTAGATAAATACTAAA-TA TTTGAT TAGTTTAGTATTTATCTAAAAATATA AAATAATAATCTATA TERM 547 596262 - 596214 - R 93 -11.7 -2.65354 | gap 1, overlap 596210 GTTATTTTAAATTTA TTTTTAGATAAATACTAAA-TA TTTGAT TAGTTTAGTATTTATCTAAAAA TATAAAATAATAATC pitA 597803 - 596304 - | putative phosphate transporter TERM 548 596937 - 596957 + g 73 -5.5 -4.81163 | opp_overlap 596937 596942, overlap 596932 596942 AATAATTTCCTTAAA CATAATGTT ACT AACATTTTG TTTTATTAATGTTTG TERM 549 596942 - 596952 + g 74 -4 -5.28831 | opp_overlap 596942 596937, overlap 596937 596932 TTTCCTTAAACATAA TGTT ACT AACA TTTTGTTTTATTAAT ynfM 599250 - 598039 - | putative transport protein dapF 600271 - 599411 - | diaminopimelate epimerase TERM 550 599726 - 599708 - G 71 -3.9 -5.06016 | AGTAGATAAATAAAA TCCTATT TTTTT AACAGGA TACTTTTTTAAATTA TERM 551 600367 - 600333 - H 70 -8.2 -2.83715 | overlap 600338 600363 TGTACTATTATTACA TAAAATTTCAATAATA AAA TACTACCGAAATTTTA TTATCAATAAAATAA cyaY 600492 - 600848 + | CyaY TERM 552 601522 - 601500 - T 72 -8 -3.57173 | opp_overlap 601506, overlap 601506 AAAAATATATTACAA TAAAAATTAT TCT ATAATTTTTA AGAACGTTTCATCAT rho 602779 - 601520 - | transcription termination factor Rho TERM 553 602991 - 602959 - R 100 -12.3 -4.19879 | opp_overlap 602954 602961 602966, overlap 602961 ATAAAATTTGGAAAA CATTTAATACTACCA CAG TGGTAGTATTAAATC TATAATTTAAATAAC TERM 554 602961 - 602989 + r 100 -14.9 -3.06483 | opp_overlap 602959 602961, overlap 602954 602966 AAAATTTGGAAAACA TTTAATACTACCA CAG TGGTAGTATTAAA TCTATAATTTAAATA TERM 555 602989 - 602961 - R 100 -14.9 -3.68674 | opp_overlap 602961 602954 602966, overlap 602959 AAAATTTGGAAAACA TTTAATACTACCA CAG TGGTAGTATTAAA TCTATAATTTAAATA TERM 556 602966 - 602984 + r 84 -10.4 -3.18086 | opp_overlap 602961 602959, overlap 602961 602954 TTGGAAAACATTTAA TACTACCA CAG TGGTAGTA TTAAATCTATAATTT TERM 557 603058 - 603042 - R 79 -6.7 -4.84311 | opp_overlap 603042 603041 603045 TTTTATATAACAAAA CTTTATT TTA AATAAAG ATTTAAAAAATCTTT trxA 603373 - 603044 - | thioredoxin rep 605534 - 603522 - | ATP-dependent DNA helicase Rep ilvC 607110 - 605635 - | ketol-acid reductoisomerase ilvD 609023 - 607185 - | dihydroxy-acid dehydratase nifS 609579 - 610793 + | cysteine desulfurase iscU 610825 - 611205 + | scaffold protein TERM 558 611516 - 611489 - g 82 -2.8 -5.97575 | AATTTACAAAAAAAA TTTCATCCAGAT TCAT ATCAAGATAAAA ATATTTATACAAAAA hscB 611399 - 611908 + | chaperone protein HscB TERM 559 612704 - 612714 + G 74 -4 -5.26119 | ACACATTTTTCATAT TCTA AAT TAGA TTTTATTTTTCAAAG hscA 611933 - 613468 + | chaperone protein HscA TERM 560 613541 - 613553 + F 73 -3.5 -5.85178 | opp_overlap 613536 613541 TTTAAAAAATTAAAA TTAAT ATA ATTAA TTTTTTTTAAATATT fdx 613586 - 613909 + | ferredoxin engA 615364 - 613976 - | putative GTP-binding protein TERM 561 614082 - 614098 + g 76 -6.7 -4.46514 | opp_overlap 614082, overlap 614096 TACTTTTTGTAGACA TTAGAAA GTT TTTCTAA TTTATTTCCATGAAT TERM 562 615159 - 615142 - G 72 -5.7 -4.57569 | opp_overlap 615142 615149 615150 TTACCTGTTCAAAAA TTTCTTT ATCT AAAGAAA TTTTTTTTTTAGAAT TERM 563 615142 - 615159 + g 100 -5.7 -6.3578 | opp_overlap 615142, overlap 615149 615150 TTACCTGTTCAAAAA TTTCTTT ATCT AAAGAAA TTTTTTTTTTAGAAT yfgM 615980 - 615399 - | hypothetical protein SEQUENCE gi|28191365|ref|NC_004555.1| Buchnera aphidicola str. Bp (Baizongia pistaciae) plasmid pBBp1, complete sequence (length 2399) yqhA 1 - 498 + | hypothetical protein repA2 564 - 1283 + | RepA2 protein TERM 1 2102 - 2075 - g 72 -5 -4.82154 | overlap 2094 2099 AAGTTAGATGAAAAA GATATTAGACAA AAGA TTATCAAATATC TAGTGTCTAAATATT repA1 1373 - 2230 + | RepA1 protein