TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.724169 %AT, 537989 nt, 3511 terms. Intergenic: 0.804245 %AT, H2T: 77307 nt, 941 terms; T2T: 14462 nt, 459 terms; H2H: 22645 nt, 719 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|219681389|ref|NC_011833.1| Buchnera aphidicola str. 5A (Acyrthosiphon pisum), complete genome (length 642122) gidA 197 - 2083 + | glucose-inhibited division protein A atpB 2278 - 3102 + | ATP synthase subunit A atpE 3139 - 3378 + | ATP synthase subunit C TERM 1 3434 - 3462 + F 75 -8.3 -3.75465 | opp_overlap 3429 3434, overlap 3429 3430 GATTATTACATAAAA TCTTTACGTTTTT TTA GATAACGTAAAGA TTAATTTTCATATTG TERM 2 3462 - 3434 - f 78 -7.6 -4.58424 | opp_overlap 3429 3434 3430, overlap 3429 GATTATTACATAAAA TCTTTACGTTTT TTTAG ATAACGTAAAGA TTAATTTTCATATTG atpF 3497 - 3982 + | ATP synthase B chain atpH 3982 - 4515 + | ATP synthase delta chain TERM 3 4826 - 4810 - g 72 -6.6 -4.2349 | GGTGTACAGGGAAAA TACTGG AAGTG CCAGTA GGTGATAATTTTTTA TERM 4 4888 - 4903 + G 71 -2.6 -5.44119 | gap 1 TTGATGGAAAGGATT CCATACA AAA TG-ATGG TTTTTTTCCAGTAGA TERM 5 4957 - 4939 - g 70 -8.2 -3.14211 | ATGCTCCTGGAGTAA TTGACCGA AAA TCAGTCAA CCAGCCTATACAAAC TERM 6 5224 - 5202 - g 70 -8.4 -2.72879 | opp_overlap 5201, overlap 5199 AATACAATTATAGTA GTAGCTTCTG CTT CAGAAGCCGC GTCCTTACAATATTT atpA 4530 - 6068 + | ATP synthase subunit A TERM 7 6087 - 6074 - f 72 -3.9 -5.47399 | TCAATTTTAAAAAAA TAACT AATA AGTTA AAAAGAGAAAATAGT TERM 8 6170 - 6159 - g 74 -2.2 -5.63374 | CCAATACTAAAAAAA TCAC TAAA GCGA TGGAAATGGTGGCAG atpG 6101 - 6973 + | ATP synthase gamma chain TERM 9 7807 - 7823 + G 84 -9.5 -3.53091 | opp_overlap 7820, overlap 7783 CGGATGCCGTCAGCA GTAGGTT ATC AACCTAC TTTAGCAGAAGAAAT atpD 6997 - 8394 + | ATP synthase subunit B atpC 8421 - 8837 + | ATP synthase epsilon chain TERM 10 8902 - 8886 - T 82 -6.7 -5.2189 | opp_overlap 8879, overlap 8899 GCAAGTACTAAAAAA TTTATTC TAA GAATAAA AAATATTTTTAAACG gyrB 11322 - 8911 - | DNA gyrase subunit B TERM 11 9007 - 9019 + g 70 -7.7 -3.50722 | opp_overlap 9006 ATTAAATAAATTATT TGCAG AAA CTGCA TCTTTGATAGTTACC TERM 12 10760 - 10786 + g 72 -6.8 -4.07535 | opp_overlap 10767, overlap 10762 10767 TCACGCAAACGTTTA GATAAAATTTCA TAT TGAAATTTTATA TTATTTGTAAAAGTT TERM 13 10762 - 10784 + g 84 -9.4 -3.62695 | opp_overlap 10767, overlap 10760 10767 ACGCAAACGTTTAGA TAAAATTTCA TAT TGAAATTTTA TATTATTTGTAAAAG TERM 14 10767 - 10779 + g 72 -4.9 -4.86029 | opp_overlap 10767, overlap 10762 10760 AACGTTTAGATAAAA TTTCA TAT TGAAA TTTTATATTATTTGT dnaN 12549 - 11449 - | DNA polymerase III beta chain dnaA 13918 - 12554 - | chromosomal replication initiator protein DnaA TERM 15 12825 - 12840 + g 79 -4.8 -5.55769 | ACTGTTTTTTGGATA TTATCA ATAG TGATAA TTTTTTCTTGTACAG TERM 16 13714 - 13734 + g 84 -4 -5.82316 | opp_overlap 13713 TTAATGGAGAATTAG TACCGCAA TAATC TTGCAGTA TTTTTTTTAAATGAT TERM 17 13998 - 14033 + H 76 -5.1 -5.47159 | opp_overlap 14000, overlap 13996 14000 GTTTACTTTGATATA TATAATTTTATATAA TTTTTT TTATATGAAATTATG TTTTTTATATTAAAA rpmH 14369 - 14512 + | 50S ribosomal protein L34 TERM 18 15172 - 15156 - g 82 -2.4 -6.11644 | opp_overlap 15167, overlap 15167 TGATGTAAAAAAAAA TAAAAA GAAAA TTTTTA TCAAAAATGATGTGA TERM 19 15179 - 15167 - g 75 -3.5 -5.51078 | opp_overlap 15167, overlap 15156 AAAATAAAAAGAAAA TTTTT ATC AAAAA TGATGTGATTAGTTT yidC 15010 - 16608 + | 60 kDa inner-membrane protein TERM 20 16904 - 16918 + G 71 -7.2 -3.78775 | ACAAGGCCATGGTAG TCCATT AAT AATGGA TTTACTAATAAGAAG TERM 21 17310 - 17339 + G 93 -10.8 -3.77264 | AAAAAAATCGTAATT GCTGGACTTCCT AATTCC GGGAAGTCTAGC TTATTAAATATTTTA TERM 22 17516 - 17544 + G 80 -6.1 -4.99861 | opp_overlap 17521, overlap 17521 TATCATGCGTGCTTG GGAAATGATTAGA AAA TCTGATCATGTTC TTTTTGTAATTGATA TERM 23 17806 - 17849 + G 70 -4.7 -4.65895 | gap 1 AAAGTGTTTTCATTG CTCGTCGT-CGTCATATCAA ACAAC TTGATTTAGCGTACGATGAG TTTTTAACTGCCGAA thdF 16647 - 18008 + | tRNA modification GTPase TERM 24 18058 - 18074 + F 70 -8.7 -2.62616 | opp_overlap 18048, overlap 18049 TTGAACCACCGACAC GGGGATT TTC AGTCCCC TGCTCTACCAACTGA TERM 25 18143 - 18157 + F 75 -4.4 -5.59879 | overlap 18150 18152 AAATGTTGTCAATGT TTTTTA TTG TAAAAA TTTTTTATATTTATA TERM 26 18260 - 18244 - f 73 -2.4 -5.95539 | TCTTAAATAAAAAAA TAAAAA AATAA TTTTTA CCCTTGAAAGTTTTA groES 18375 - 18665 + | co-chaperonin GroES groEL 18714 - 20360 + | 60 kDa chaperonin TERM 27 20438 - 20407 - f 73 -7.4 -3.95535 | opp_overlap 20409, overlap 20405 20408 ACAATTTTAAAAATA CCTTTCCTCAGAAT CACT ATTCTGAGGAAATT TTTTATTTTCTTTGA TERM 28 20437 - 20408 - f 81 -10.9 -2.96237 | opp_overlap 20409, overlap 20407 20405 CAATTTTAAAAATAC CTTTCCTCAGAAT CACT ATTCTGAGGAAAT TTTTTATTTTCTTTG TERM 29 20409 - 20436 + F 100 -14.4 -5.95449 | opp_overlap 20408 20407 20405 AATTTTAAAAATACC TTTCCTCAGAAT CACT ATTCTGAGGAAA TTTTTTATTTTCTTT efp 20985 - 21596 + | elongation factor P dnaC 22354 - 21614 - | DNA replication protein DnaC dnaT 22848 - 22354 - | primosomal protein I rsmD 23520 - 22945 - | 16S rRNA m2G966 methyltransferase (YhhF) TERM 30 23022 - 23034 + g 87 -2.7 -6.22691 | TCCAATTTTTTGGTA CAATT ATG GATTG TTTTTTTTCTTGTTC TERM 31 23766 - 23749 - g 86 -7.1 -5.09685 | CAATACAGATAAAAA TCATGAT ATTA ATCATGA AGACTTATATACCAA ftsY 23651 - 24787 + | cell division protein FtsY TERM 32 24854 - 24872 + F 80 -7.6 -4.87291 | TTTAATTATTTTTTG TATAAATC TTT GATTTATA TTTTTAATTAAAGTA TERM 33 24979 - 24963 - g 71 -8.1 -3.17416 | overlap 24962 AAATGATTAATAAAG TACAGAT TTT ATCTGTA ACACCACCAGGTAAT rpoH 24950 - 25804 + | RNA polymerase sigma factor TERM 34 25848 - 25835 - T 77 -2.5 -6.10295 | opp_overlap 25817, overlap 25836 TTAATACAAAAAAAA TTTTT TATT AAAAA TTATTTATATAGAGT glmS 27774 - 25945 - | D-fructose-6-phosphate amidotransferase TERM 35 26183 - 26197 + g 75 -7.2 -4.07885 | ATATTTTTTTTATTT TTCTCT AAT AGAGAA TTTTCAGGAGCAATC TERM 36 27459 - 27445 - G 72 -5.7 -4.56597 | opp_overlap 27444 27445 27456 TTGTTTTTTTAAAAA TCCAC GCAGT GTGGA ATTGTTTTCAATAAT TERM 37 27456 - 27478 + g 75 -8.6 -3.48593 | opp_overlap 27445, overlap 27445 27444 AAAATCCACGCAGTG TGGAATTGTT TTC AATAATTCCA TTATGTACAACAATA TERM 38 27573 - 27584 + g 100 -3 -6.67286 | TATGAGCAACTCCAA TACT ACCA AGTA TTTTTTTTTTATTTG glmU 29223 - 27844 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 39 29778 - 29754 - g 70 -5.1 -4.64159 | opp_overlap 29754 ATAAATAATAATAAA GTAGAAAATAA TTT TTGTTCTCTAC TTTCATCATTGCAAT yigL 29403 - 30221 + | sugar phosphatase TERM 40 30233 - 30248 + F 75 -2.6 -6.0458 | opp_overlap 30234, overlap 30234 30242 ATAAAGTTATAAAAA TTTCTT ATAC AAGAAG TTTTTTTTGATTTCT metE 31192 - 33468 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 41 33505 - 33556 + T 78 -10 -2.73575 | gap 1, opp_overlap 33497 33505 33512, overlap 33504 33502 33507 33512 TATAATATAATTTAA TATTAAATCATC-TTTTAGAATATT TTA AAAAATCTAAAATGATGATTTAATA CTTATAAATTTTTAT TERM 42 33556 - 33505 - T 79 -10 -3.30218 | gap 1, opp_overlap 33504 33502 33505 33507 33512, overlap 33497 33512 TATAATATAATTTAA TATTAAATCATC-TTTTAGAATATT TTA AAAAATCTAAAATGATGATTTAATA CTTATAAATTTTTAT purH 35168 - 33591 - | IMP cyclohydrolase TERM 43 34371 - 34389 + g 84 -9 -3.9093 | TACACACTCTAATGC TATATCAG AAT CTGATATA TTATTATATGATAAA TERM 44 35274 - 35288 + r 80 -8.5 -3.98745 | opp_overlap 35274 35266 ATACTAATTTAGTAA GGGGC ACTAC GCCCC TTCTTTAAATACTTC TERM 45 35288 - 35274 - R 76 -9.2 -3.23152 | opp_overlap 35274, overlap 35266 ATACTAATTTAGTAA GGGGCA CTA CGCCCC TTCTTTAAATACTTC hupA 35587 - 35309 - | DNA-binding protein hu-alpha TERM 46 35737 - 35720 - R 74 -5.7 -4.9792 | opp_overlap 35719 35714 35720 TATTTGATATAAAAA GAAAAAA TATA TTTTTTC ATATTATAAATTCTA TERM 47 35850 - 35828 - R 74 -5.8 -4.73635 | TACAATTGAATAAAA TTTAAATATA TAA TATATCTAAA AATCATCAAAAAAAT TERM 48 35901 - 35924 + r 70 -8.4 -2.62267 | opp_overlap 35901 35900, overlap 35900 35898 TTATTTTTAATAAAT TGTTATTTTT TTTA AAAAATAACA GTATTGATTTCTACA TERM 49 35924 - 35901 - R 72 -8.4 -3.09784 | opp_overlap 35900 35898 35901, overlap 35900 TTATTTTTAATAAAT TGTTATTTTT TTTA AAAAATAACA GTATTGATTTCTACA TERM 50 36018 - 36040 + r 75 -2.9 -5.93252 | overlap 36020 ATGAATTTGAAGCGT TTTTATATA AAATA TATATAAGA TTTTTTATTTTTAAA TERM 51 36266 - 36293 + r 70 -7 -4.12532 | overlap 36269 ATTATCATGTTTTTA CTGTGGCTGCTT TTAA GAGCAGCCATAA TTTATATATACAAAA TERM 52 36269 - 36290 + r 81 -10.9 -3.09116 | overlap 36266 ATCATGTTTTTACTG TGGCTGCTT TTAA GAGCAGCCA TAATTTATATATACA rpoC 40544 - 36321 - | DNA-directed RNA polymerase beta' subunit rpoB 44650 - 40622 - | DNA-directed RNA polymerase beta chain TERM 53 41409 - 41431 + g 74 -6.4 -4.48902 | opp_overlap 41409 GGCATATCTTCAACA GGATTAATTT TAG AAATTACTCC TTTATTTCCATGTCT TERM 54 44673 - 44695 + r 71 -5 -4.96848 | CTAAGCTCGTTGACA GATAAGTTGA AAA TTAATTTATC TTTTTGTCTGAAGGG TERM 55 44745 - 44755 + r 75 -4 -5.54264 | CGTAAGAATTTTAAT TACA TTT TGTA TTTTTTTAAATGTTT TERM 56 44834 - 44804 - R 81 -10.4 -3.15544 | opp_overlap 44804 44806 44807, overlap 44806 TTTTATTTTGATCAA CAGGGCTGGTGAAG CAA CATCACCAGCCGTA TTTGAAAATTAATTA TERM 57 44804 - 44834 + r 74 -8.2 -3.62478 | opp_overlap 44804 44806, overlap 44806 44807 TTTTATTTTGATCAA CAGGGCTGGTGAAG CAA CATCACCAGCCGTA TTTGAAAATTAATTA TERM 58 44832 - 44806 - R 81 -10.8 -3.14051 | opp_overlap 44804 44806 44807, overlap 44804 TTATTTTGATCAACA GGGCTGGTGAAG CAA CATCACCAGCCG TATTTGAAAATTAAT TERM 59 44806 - 44832 + r 83 -10.8 -3.38581 | opp_overlap 44806 44804, overlap 44804 44807 TTATTTTGATCAACA GGGCTGGTGAAG CAA CATCACCAGCCG TATTTGAAAATTAAT TERM 60 44807 - 44831 + r 95 -14.3 -2.62667 | opp_overlap 44806 44804, overlap 44806 44804 TATTTTGATCAACAG GGCTGGTGAAG CAA CATCACCAGCC GTATTTGAAAATTAA rplL 45238 - 44870 - | 50S ribosomal protein L7/L12 rplJ 45802 - 45305 - | 50S ribosomal protein L10 rplA 46763 - 46068 - | 50S ribosomal protein L1 rplK 47194 - 46766 - | 50S ribosomal protein L11 nusG 47787 - 47242 - | transcription antitermination protein NusG secE 48173 - 47790 - | preprotein translocase SecE subunit TERM 61 48223 - 48210 - R 75 -3.9 -5.48787 | ATAATATAGAAAAAA TATGT TAAT ACATA AAAAATTTCATTCTT TERM 62 48332 - 48315 - R 72 -5.7 -4.74518 | opp_overlap 48315 48314 48311, overlap 48305 AACTATTAAAATAAA CTATTTT TTTT AAAATAG ATTAATTTTTTTATG TERM 63 48516 - 48532 + r 80 -10.9 -2.65264 | overlap 48518 TTGAACTGGGGACCT CACCCTT ACC AAGGGTG TGCTCTACCTACTGA murB 50048 - 48978 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 64 50245 - 50267 + G 73 -4.3 -5.00616 | opp_overlap 50265, overlap 50249 ATACAGTGTTCTTTT GAATTTTTT CCGCC GAAAAATTC TTTTTTAGAAGAAAA metF 50164 - 51042 + | 5,10-methylenetetrahydrofolate reductase argE 52199 - 51054 - | acetylornithine deacetylase TERM 65 52808 - 52795 - g 74 -2.4 -5.59502 | GAAAAAATTAAAAAA GCAA ATCTGA TTGC ATTACCTGGGTGTTA argC 52360 - 53364 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 53385 - 54158 + | acetylglutamate kinase TERM 66 55325 - 55341 + G 72 -5.1 -4.82518 | opp_overlap 55328, overlap 55328 GATAAAGTGTATAAG CAATCTG ATG CAGATGG TTTTATTCGTCTTTT argG 54188 - 55399 + | argininosuccinate synthase TERM 67 56339 - 56325 - g 81 -2.1 -5.93809 | GCCTCAGAAAAAAAA TCCAG ATGCA CTAGA ACTTATTCGAGCCAA argH 55471 - 56850 + | argininosuccinate lyase yibN 56932 - 57366 + | predicted rhodanese-related sulfurtransferase (YibN) secB 57474 - 57902 + | protein-export protein SecB cysE 58004 - 58828 + | serine acetyltransferase rpoD 60773 - 58935 - | RNA polymerase sigma factor TERM 68 59850 - 59874 + g 93 -4.5 -6.10489 | opp_overlap 59864 AAGATAGTTAATTTT TTTTATTGGAA AAA TTTTAATAAAA TTTTTTTTTGGCATT dnaG 62674 - 60941 - | DNA primase TERM 69 62701 - 62722 + r 95 -7.3 -6.11392 | overlap 62702 ATTATAGAATTCGTT TCCGTTCTT GAAC AAGAACGGC TTTTTTTATTTATTT TERM 70 62702 - 62721 + r 87 -10.8 -4.21345 | overlap 62701 TTATAGAATTCGTTT CCGTTCTT GAAC AAGAACGG CTTTTTTTATTTATT rpsU 62970 - 62755 - | 30S ribosomal protein S21 TERM 71 63053 - 63070 + H 78 -3.5 -5.9362 | CTATATCAATTAGTG TGATATT GTAA AGTATCA TTTTTTTATGTTTTA TERM 72 63119 - 63142 + H 72 -8.4 -3.02966 | opp_overlap 63114, overlap 63115 63117 63118 ATTTAGATTAGTTCA TTTAAAATGA ATGT TCATTTTAAA ATTTATGTCAAATAT ygjD 63204 - 64214 + | O-sialoglycoprotein endopeptidase ribB 64839 - 64192 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 73 64346 - 64374 + g 71 -7.5 -3.65656 | opp_overlap 64329 64346 64347, overlap 64347 CCGGCCGGTTTGAAA CCTGCTAGAGAAA CAA TTTCTATAGCAGC TTCTGTGTGTCCTGG TERM 74 64374 - 64346 - G 71 -7.5 -3.53012 | opp_overlap 64346 64347, overlap 64329 64347 CCGGCCGGTTTGAAA CCTGCTAGAGAAA CAA TTTCTATAGCAGC TTCTGTGTGTCCTGG TERM 75 64347 - 64373 + g 86 -11 -2.78912 | opp_overlap 64329 64346 64347, overlap 64346 CGGCCGGTTTGAAAC CTGCTAGAGAAA CAA TTTCTATAGCAG CTTCTGTGTGTCCTG TERM 76 64373 - 64347 - G 84 -11 -2.71712 | opp_overlap 64347 64346, overlap 64329 64346 CGGCCGGTTTGAAAC CTGCTAGAGAAA CAA TTTCTATAGCAG CTTCTGTGTGTCCTG yb3052 66059 - 65112 - | kinase TERM 77 66228 - 66245 + H 78 -5.7 -5.32396 | TAAAAAATTCTATTT TTCTATT ATAG AATAGAA TTTTGTTTTTAGTAT TERM 78 66870 - 66883 + G 100 -5.3 -6.11644 | opp_overlap 66870, overlap 66867 CAAGTTTTGTATGAA TGCAA TGCA TTGCA TTTTTTTTTCCCTGA TERM 79 67164 - 67180 + G 90 -3.7 -5.99318 | opp_overlap 67164 67167, overlap 67165 TATATTCGAGACATA GCAGTAT TAA ATACTGG TTTTTATTTTTTTTT TERM 80 67165 - 67179 + G 75 -7.2 -4.11355 | opp_overlap 67164 67167, overlap 67164 ATATTCGAGACATAG CAGTAT TAA ATACTG GTTTTTATTTTTTTT cca 66273 - 67517 + | tRNA nucleotidyltransferase bacA 68340 - 67543 - | bacitracin resistance protein TERM 81 67700 - 67684 - G 70 -2.3 -5.5074 | opp_overlap 67684, overlap 67672 GAATCCAATAAAAAA TATTGGA AGA TCTAATA TTTTAAAATTATGCA TERM 82 68122 - 68138 + g 74 -2.4 -5.60993 | opp_overlap 68130 AACATTTATGTTGAA TTTTAA TATTC TTAAAA TTTTTTTATGAAAAA TERM 83 68337 - 68322 - G 70 -6.2 -4.21393 | opp_overlap 68321 TAATAGAAACAATAA CTTGAT GTAG ATCAAG CATATATTTTCCTGT TERM 84 68390 - 68410 + r 74 -5.4 -5.0916 | opp_overlap 68385 68390 ATATATAAATTAAAA CGGTACTA AATAA TAGCACCG TTTTTGTATTAAAAA TERM 85 68410 - 68390 - R 78 -7.6 -4.66057 | opp_overlap 68390, overlap 68385 ATATATAAATTAAAA CGGTACTA AATAA TAGCACCG TTTTTGTATTAAAAA crr 68911 - 68426 - | glucose-specific PTS system enzyme IIA component TERM 86 68901 - 68869 - G 81 -7.4 -4.6526 | gap 1 ATAAAGGTGCAAAAA TTTCTG-TTTTTTTA CTGT TAAAAAAATCAGAAA AGAAACTCATTTTTT ptsI 70676 - 68961 - | phosphoenolpyruvate-protein phosphotransferase TERM 87 69374 - 69358 - G 75 -9.5 -2.72166 | overlap 69357 TCTTTAATTAAATAT TCAGCTA TTA TAGCTGA CGCTGGAGTTTCTAT ptsH 71082 - 70825 - | phosphocarrier protein HPr TERM 88 71214 - 71226 + r 82 -4.9 -5.71983 | opp_overlap 71214 TATCTTAAATAAATT CTATT TTT AATAG TTTTTTTATAGTTCA cysK 72179 - 71232 - | cysteine synthase A TERM 89 71971 - 71987 + g 78 -7.3 -4.52505 | ATTCCTGTATTACCA CTAGTCG CCT CGATTAG TTTTACATTTTTATT TERM 90 73105 - 73116 + G 82 -4.4 -5.60993 | overlap 73101 ATTAATATTTTCATG TCAC GGAT GTGA TTTTTTTGTAAAAAC lig 72434 - 74461 + | DNA ligase (NAD+) TERM 91 75497 - 75485 - g 70 -4.9 -4.76213 | AGAAAGGTAATAAAA TTTCT AAA AGAAA AAATGCTATAAATAT gltX 74773 - 76176 + | glutamyl-tRNA synthetase TERM 92 76467 - 76483 + T 77 -2.3 -6.09888 | opp_overlap 76474, overlap 76474 TTATAAAAAATATTT TTTAACA CTG TGCTAAA TTTTTTTTATTCAGC fliE 76812 - 76516 - | flagellar hook-basal body complex protein FliE TERM 93 78596 - 78584 - g 83 -4.9 -5.74122 | overlap 78576 TATTATAGAAAAAAA TACTT TTC AAGTA GATCTTCAAAATAAT fliF 77076 - 78713 + | flagellar M-ring protein fliG 78710 - 79705 + | flagellar motor switch protein FliG fliH 79698 - 80360 + | flagellar assembly protein FliH TERM 94 80570 - 80589 + GF 79 -3.6 -5.66338 | overlap 80572 AATGCTGAAGTGATA GGTTTTTC GGGA GAAAAAAC TTTTTTATTATCTTT TERM 95 80689 - 80662 - gf 79 -9.4 -3.25312 | opp_overlap 80654 80662, overlap 80654 80664 80668 AAAAATAGCTAGCAA TAGCAATTTTTT TATA AAAAAATTGCCA TTAGGTATGGAATTA TERM 96 80687 - 80664 - gf 83 -9.8 -3.17608 | opp_overlap 80654 80662, overlap 80654 80662 80668 AAATAGCTAGCAATA GCAATTTTTT TATA AAAAAATTGC CATTAGGTATGGAAT TERM 97 81117 - 81101 - gf 91 -7.3 -5.3104 | opp_overlap 81101 TTATTAAAAATAAAA GCAGCAT CTT ATGCTAC TAATATTGCAGAATA TERM 98 81167 - 81145 - gf 71 -4.3 -4.84761 | opp_overlap 81145, overlap 81131 ATATTTTTATAAAAA TAATAAACA TGTAT TGCTTATTA TGGATTCATTGACTC fliI 80318 - 81721 + | flagellum-specific ATP synthase fliJ 81745 - 82188 + | flagellar FliJ protein TERM 99 82310 - 82296 - g 76 -7.2 -4.29738 | opp_overlap 82296 82284 TCATATTTATTAAAA TCTACT TTT AGTAGA TTCAATCAATATTTT TERM 100 83236 - 83216 - g 71 -4.2 -5.13521 | opp_overlap 83227, overlap 83227 83229 AAACCAGTTAAAAAA TTATAAAA ACTTA TTTTATAA AAATATTTATTACAC fliK 82197 - 83333 + | flagellar hook-length control protein TERM 101 84072 - 84062 - g 74 -2.6 -5.72616 | overlap 84071 ATGTATAGAAAAAAA TATT GAG AATA AAGTATCTTTAAATG fliM 83394 - 84341 + | flagellar motor switch protein FliM fliN 84334 - 84735 + | flagellar motor switch protein FliN fliP 84747 - 85886 + | flagellar biosynthetic protein FliP TERM 102 85887 - 85901 + F 78 -4.4 -5.80003 | opp_overlap 85887 AGTTTTAATACATAA TATTTT TAT AAAATA TTTTTTGTTTATTAC fliQ 85958 - 86227 + | flagellar biosynthetic protein FliQ TERM 103 86286 - 86300 + G 90 -3.6 -6.10295 | TTTTTTTTGGCCTAT GATAAG AGT TTTATC TTTTTTTTCTGTTGC fliR 86227 - 87003 + | flagellar biosynthetic protein FliR TERM 104 87092 - 87126 + T 95 -10.4 -4.8048 | opp_overlap 87093 87097, overlap 87093 AAAAAATTTCTACAA ATAAAGTATAATTTTT TAA AAAAATTATACTTTAA TTTTTAGTGTAAAAA TERM 105 87093 - 87125 + T 100 -13.9 -3.47806 | opp_overlap 87093 87097, overlap 87092 AAAAATTTCTACAAA TAAAGTATAATTTTT TAA AAAAATTATACTTTA ATTTTTAGTGTAAAA TERM 106 87125 - 87093 - T 100 -13.9 -3.92745 | opp_overlap 87093 87092, overlap 87097 AAAAATTTCTACAAA TAAAGTATAATTTTT TAA AAAAATTATACTTTA ATTTTTAGTGTAAAA TERM 107 87121 - 87097 - T 91 -10.3 -4.55697 | opp_overlap 87093 87092, overlap 87093 ATTTCTACAAATAAA GTATAATTTTT TAA AAAAATTATAC TTTAATTTTTAGTGT TERM 108 87136 - 87158 + T 80 -8 -4.37737 | overlap 87130 CTTTAATTTTTAGTG TAAAAAAATA GAT TATTTTTTTA TTTAATTTTTCCTTC rpmG 87323 - 87156 - | 50S ribosomal protein L33 rpmB 87561 - 87334 - | 50S ribosomal protein L28 TERM 109 87847 - 87865 + H 78 -6.2 -5.24799 | opp_overlap 87851 87855, overlap 87837 87855 GATGCTAACTATTAG TTAATTTA TTA TAAATTAA TTTTTATATTTATAA TERM 110 88020 - 88030 + G 75 -5.4 -4.87786 | ATATATTTTTAATTT TACG AAT CGTA TTTTTATAGGATTGA TERM 111 88489 - 88479 - g 91 -2.6 -6.34424 | TTTTGAAAAAAAAAA TATT TTA AATA AATCAACTATTATTA TERM 112 88525 - 88509 - g 73 -5.3 -4.7871 | overlap 88499 AACTATTATTAAAAA TTTTAAT AAA ATTAAAA AAATATATAGTTTTT TERM 113 89195 - 89185 - g 87 -2.6 -6.25578 | ATCAAACAAAAAAAA TTTT ATA AAAA AGTAATTCATCCAGA TERM 114 90272 - 90262 - g 87 -2.6 -6.17033 | AAAAAAAATAAAAAA TTAT CGA ATAA TAAAAATATTTTTGG TERM 115 90506 - 90522 + G 76 -3.8 -5.43514 | opp_overlap 90506 GAAGTAACAACATAT TAAAGT ATATA ACTTTA TTTTTTCCTTATTTT ytfN 87907 - 90819 + | hypothetical protein ppa 91383 - 90835 - | inorganic pyrophosphatase TERM 116 91000 - 91018 + g 80 -7.6 -4.62163 | CTTTTTTAACAATTC TGATATAT CTG ATATATCA TTTATGTTTTTATAT TERM 117 91849 - 91837 - g 72 -4.9 -4.93316 | TAAGAACATTAAAAA TATGT TAG ACATA GCTATTAATATTTCA pmbA 91577 - 92917 + | PmbA protein TERM 118 92972 - 92947 - f 80 -10.7 -2.76509 | opp_overlap 92951, overlap 92946 92951 TTTTAAATAATGAAC TAAAGGTAATA AATT TATTACCTTTA TAAAAATATTTCTAG TERM 119 92968 - 92951 - f 73 -7.1 -4.05045 | opp_overlap 92951, overlap 92947 92946 AAATAATGAACTAAA GGTAATA AATT TATTACC TTTATAAAAATATTT TERM 120 92951 - 92968 + F 71 -7.1 -3.89903 | opp_overlap 92951 92947 92946 AAATAATGAACTAAA GGTAATA AATT TATTACC TTTATAAAAATATTT TERM 121 94312 - 94324 + F 78 -3.5 -5.89921 | opp_overlap 94312 CATTTTATTTAAATA TAAAA TTT TTTTA TTTTTTTATTCTAAT TERM 122 94455 - 94442 - g 74 -2.4 -5.64873 | opp_overlap 94442 GGTAATAATAAAAAA GAAG TACTAG CTTC TTTATATAAAGGTGT fabB 94382 - 95602 + | 3-oxoacyl-[acyl-carrier-protein] synthase I TERM 123 95615 - 95597 - f 75 -4 -5.63374 | overlap 95610 CTAATAGTAAAAAAA TATTAATA TAC TATCAATA ATTGAAATATTTTTT TERM 124 95724 - 95694 - f 87 -7.2 -5.41143 | opp_overlap 95694 TATTTTTTAAAAAAA TCATTTTAATAT TTTTTTG ATATTAAAATGA TTTTTTATTCTTAAT TERM 125 95694 - 95724 + F 95 -7.9 -5.66229 | opp_overlap 95694 TATTTTTTAAAAAAA TCATTTTAATATT TTTTT GATATTAAAATGA TTTTTTATTCTTAAT talA 95842 - 96792 + | transaldolase TERM 126 97168 - 97154 - g 86 -10 -3.59738 | opp_overlap 97156, overlap 97146 CAGGACATCCTGAAA CAGGTG AAA CACCTG GTGTAGAAACAACTA TERM 127 97238 - 97250 + G 70 -6.3 -4.25256 | opp_overlap 97238 TGGCTATTGCAGAAA GAACT TTA AGTTC TTATTTTAATCGACC tktB 96847 - 98844 + | transketolase TERM 128 98870 - 98890 + F 75 -8.3 -3.79687 | opp_overlap 98867, overlap 98868 AATTTTAAATATTTA TGGGGCT CAATTAT AGCCCCA TCTTTTATGAAAAAT dapE 98949 - 100076 + | succinyl-diaminopimelate desuccinylase TERM 129 100095 - 100115 + T 84 -7.1 -5.28778 | opp_overlap 100094 TTCAACAAAAATATT TATAAAAAA ACA TTTTTTATA TTTTTTATAAATGAT TERM 130 100159 - 100127 - T 83 -10 -3.87373 | opp_overlap 100126 100127 TATATTTTTTATAAA TGATGCAGAATATC ATAGA GATAGTCTGCACCA ATTATTACGCATGAA dapA 101350 - 100466 - | dihydrodipicolinate synthase TERM 131 100625 - 100648 + g 72 -6 -4.58085 | GGGTTCTATGAACAG CGCTTCATGT AGTA ACATTAGGCG TTTATTTATAGATCT TERM 132 100825 - 100812 - G 76 -3.9 -5.5112 | opp_overlap 100812 100809 100805, overlap 100805 CTGATTAATAAAAAA TTAGT TTTA ACTAA TTCTTTTATTTTATG aroC 102990 - 101926 - | chorismate synthase yb2331 103285 - 103845 + | hypothetical protein hisG 104170 - 105069 + | ATP phosphoribosyltransferase hisD 105078 - 106385 + | histidinol-dehydrogenase hisC 106382 - 107488 + | histidinol-phosphate aminotransferase hisB 107478 - 108539 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 108539 - 109129 + | amidotransferase hisH hisA 109134 - 109874 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisF 109853 - 110629 + | imidazole glycerol phosphate synthase subunit HisF TERM 133 110653 - 110635 - g 78 -4.6 -5.42862 | opp_overlap 110638, overlap 110638 AGAGTGTTAAAAAAA CATGATTT ATT AAATCTTG ATTGGACAAAAACTA hisI 110623 - 111270 + | phosphoribosyl-AMP cyclohydrolase gnd 111629 - 113035 + | 6-phosphogluconate dehydrogenase dcd 113198 - 113818 + | deoxycytidine triphosphate deaminase TERM 134 113832 - 113844 + F 76 -4.9 -5.46129 | opp_overlap 113832 AAAGTTTTTACGTAA TATAC TAT GTATA TTTTTTAATTTCTTA metG 113966 - 115609 + | methionyl-tRNA synthetase mesJ 116979 - 115657 - | cell cycle protein MesJ ribE 117205 - 117831 + | riboflavin synthase subunit alpha rnfA 117868 - 118449 + | hypothetical protein rnfB 118452 - 118955 + | ferredoxin II TERM 135 118972 - 118960 - f 72 -3.5 -5.66229 | overlap 118970 ATGAAGAATAAAAAA TTATT AGA AATAA AAAAAATTTTTAAAA TERM 136 118989 - 118979 - f 81 -2.6 -6.28967 | opp_overlap 118979, overlap 118970 TAGAAATAAAAAAAA TTTT TAA AAAA TTCTTTTCTATAAAA rnfC 119118 - 120539 + | membrane protein TERM 137 120700 - 120710 + G 95 -4 -6.32216 | TTTTGGTATTGGTAC TTTG ATA CAAA TTTTTTTTTCTATAT ydgO 120587 - 121630 + | hypothetical protein TERM 138 121791 - 121765 - f 95 -3.9 -6.77747 | opp_overlap 121773, overlap 121780 CAAGAAAAAAAAAAA TATTAAAAGAA GTTAT TCCTTCTAATA TATATCATACATTTG TERM 139 122219 - 122188 - gf 74 -6.8 -4.29432 | gap 1, opp_overlap 122188 122187 CAAATTCTATCAAAA GAACGGT-TGTTTTT ATT AAAAAGATACCGTTC ATATTTGATTTTTTA rnfG 121779 - 122273 + | nitrogen fixation protein TERM 140 122836 - 122855 + G 76 -6.6 -4.52803 | TTTCTTATATTAGGC TTCTTAAT TGCC ATTAAGAA TTTTATAGATTTATA TERM 141 122920 - 122895 - g 71 -2.8 -5.38321 | gap 1, opp_overlap 122899 AAATACTATAAAAAA TATT-GAACAA TGTTC TTGTTCTAATA AAATAAAGTAACAAT ydgQ 122248 - 122931 + | NADH-ubiquinone oxidoreductase nth 122942 - 123574 + | endonuclease III TERM 142 124189 - 124176 - g 87 -2.5 -6.17184 | opp_overlap 124177, overlap 124177 AGGACGAAAAAAAAA TTATT TTTC AATAA AAAAATATCAATTGT TERM 143 124831 - 124868 + G 93 -3.1 -6.35605 | gap 1, opp_overlap 124840, overlap 124841 ATAAAAATTTTACAG GAAAACAAGTTTTATTAA TTT TTAATAAA-TTTGTTTTA TTTTTTTTTGTCTTA TERM 144 124841 - 124859 + G 82 -6.2 -5.1285 | opp_overlap 124840, overlap 124831 TACAGGAAAACAAGT TTTATTAA TTT TTAATAAA TTTGTTTTATTTTTT priA 123597 - 125777 + | primosomal protein N' tyrS 125937 - 127205 + | tyrosyl-tRNA synthetase ydiC 127605 - 127213 - | integral membrane protein of SoxR-reducing complex TERM 145 127660 - 127648 - H 81 -3.5 -6.23317 | opp_overlap 127648 ATAAAAATAAAAAAA TATTT AAA AAATA CTTGTATTGTACAGA TERM 146 127689 - 127707 + H 71 -7.6 -3.77278 | opp_overlap 127693, overlap 127684 127693 GAAATATTTATGTTT TAAACAAT ATT ATTGTTTA TTAATTATTTTTATA yb1688 127829 - 128911 + | hypothetical protein aroH 129263 - 130309 + | 3-deoxy-7-phosphoheptulonate synthase TERM 147 130316 - 130341 + F 100 -8.4 -5.30575 | opp_overlap 130314 CGTTTTTAATTCACA TGCTAGTCAA AAACAC TTGGCTAGCA TTTTTTCAATTTTTA TERM 148 130936 - 130918 - g 71 -7.6 -3.63761 | overlap 130916 GAAGCTAGAGAAATA TTTCAAAA ATG TTTTGAAA AATATAAAGTTTCTT TERM 149 132311 - 132293 - g 91 -6.8 -5.42259 | overlap 132295 GCAGTTCTAAAAAAA TATCTGTT CGC AACAGACA AGGTCATAACTTTGG TERM 150 132309 - 132295 - g 76 -7.2 -4.35085 | overlap 132293 AGTTCTAAAAAAATA TCTGTT CGC AACAGA CAAGGTCATAACTTT thrS 130477 - 132405 + | threonyl-tRNA synthetase infC 132409 - 132948 + | translation initiation factor IF-3 rpmI 133035 - 133232 + | 50S ribosomal protein L35 rplT 133275 - 133631 + | 50S ribosomal protein L20 TERM 151 133678 - 133656 - f 85 -9.9 -3.97043 | opp_overlap 133658 TTTAATACATAATAA GAGGGGAAA ATTAA TCTCCCCTC CATTCTAAAAATATT TERM 152 133770 - 133754 - f 77 -8 -4.21933 | opp_overlap 133754, overlap 133769 TTAATTTTAAAATAA GCTTCC TCTAT GGAAGC TTTTTAGTATGTTTA TERM 153 133754 - 133770 + F 84 -8 -4.90217 | opp_overlap 133754 133769 TTAATTTTAAAATAA GCTTCC TCTAT GGAAGC TTTTTAGTATGTTTA TERM 154 134427 - 134402 - g 75 -7.1 -4.07687 | gap 1, opp_overlap 134407, overlap 134405 134407 ATTTTCCCCGGAAAA GTA-TATCGTAA TGA TTACGATATTAC ACATACACCTATGTT TERM 155 134423 - 134405 - g 76 -9 -3.08032 | opp_overlap 134407, overlap 134402 134407 TTCCCCGGAAAAGTA TATCGTAA TGA TTACGATA TTACACATACACCTA TERM 156 134631 - 134660 + G 72 -6.6 -4.11371 | opp_overlap 134631 134633, overlap 134633 GAAAATCCTTAGAAA TATTAGGATGTG GCATGG TACATCCTAATG TTTTAAAAAATGTTA pheS 133826 - 134815 + | phenylalanyl-tRNA synthetase alpha chain pheT 134825 - 137212 + | phenylalanyl-tRNA synthetase beta chain himA 137217 - 137525 + | integration host factor alpha-subunit TERM 157 137528 - 137516 - f 73 -4.9 -5.18158 | opp_overlap 137516 137520, overlap 137519 137520 AATAAAAAAAAATAA CAATT TCT AATTG TATTAGAATAATTTT TERM 158 138397 - 138413 + G 84 -6.7 -5.05601 | TGATAGCAAAGATTT TATTAGT GAT ACTAATA TTTTTATATATCCTG queA 137567 - 138640 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 138681 - 139793 + | queuine tRNA-ribosyltransferase yajC 139818 - 140153 + | subunit of SecD-SecF-Yajc-YidC secretion complex glyS 142277 - 140205 - | glycyl-tRNA synthetase beta chain TERM 159 141297 - 141285 - GT 100 -6.3 -6.06723 | GTTCTTAAAAAAAAA TTCAG CAT CTGAA AGTCGCGCATGCATT glyQ 143190 - 142252 - | glycyl-tRNA synthetase alpha subunit TERM 160 143347 - 143336 - H 72 -3 -5.75342 | opp_overlap 143336 143339, overlap 143339 TTTCTTTAAAAAAAA GATT AAGA AATC TTATATTAAAAGAAT nfo 143886 - 144731 + | endonuclease IV rplY 144766 - 145053 + | 50S ribosomal protein L25 yabI 145893 - 145123 - | conserved inner membrane protein (YabI) TERM 161 145953 - 145963 + H 72 -2.6 -5.75342 | overlap 145944 TTTACGTAAATATTT TATA CTT TATA TTTTTTTTAAAACAA TERM 162 146992 - 146966 - g 71 -8.1 -3.22113 | overlap 146965 ATTGTTTGATAAAAC CTTCTGTGATT CTTAC AAACACAGAAG CAAAGAAAAAGATTT surA 146080 - 147372 + | survival protein SurA precursor ksgA 147426 - 148247 + | dimethyladenosine transferase TERM 163 148231 - 148261 + F 76 -7.2 -4.45261 | opp_overlap 148226 148230 148241, overlap 148241 AAAAATCGAATAATC TTTTAAAAATTAAT TAA ATTATTTTTTAAAA TTTTACATTTATTTA TERM 164 148764 - 148732 - g 80 -6.5 -4.82901 | opp_overlap 148724 148740 148742, overlap 148755 CTTGTCTCATAAAAA TTATGCTTTATTTCT AAA AGAAATATATCATAA TAATATAGATTTTTG apaH 148292 - 149116 + | bis(5'-nucleosyl)-tetraphosphatase folA 149628 - 149143 - | dihydrofolate reductase TERM 165 149688 - 149659 - R 95 -11.1 -4.03413 | opp_overlap 149658 149666, overlap 149666 ATCCCTTCATATAAA TTATAAATATGTT TCAC AACATATTTATAA AAATTGTTTGTTATT TERM 166 149715 - 149741 + r 74 -6.8 -4.51477 | opp_overlap 149718, overlap 149729 149731 TATTTAAGTATCAGT CAATTATTTTTT CGT ATAAAATAATTG TATTTTTTTATGTAT carB 152957 - 149718 - | carbamoyl-phosphate synthase large chain TERM 167 151263 - 151273 + g 82 -2.6 -6.04419 | overlap 151247 ATTAGGACCACCACC TAAT ATG ATTA TTTTTTTATTATTTT carA 154134 - 152971 - | carbamoyl-phosphate synthase small subunit TERM 168 153798 - 153808 + g 71 -4 -5.10933 | CAATATCCGATATTG CAAT AAT ATTG TTTTCTTTTAAATAG dapB 155153 - 154344 - | dihydrodipicolinate reductase TERM 169 154813 - 154825 + g 70 -4.9 -4.67697 | TTTTGAGAATATGAT TTGAT AAT ATCAA TTTCTTCTTTTGAAA lytB 156116 - 155157 - | LytB protein lspA 156663 - 156181 - | lipoprotein signal peptidase ileS 159485 - 156663 - | isoleucyl-tRNA synthetase ribF 160443 - 159502 - | FMN adenylyltransferase TERM 170 159538 - 159559 + g 73 -3.1 -5.43514 | opp_overlap 159543 ATATTTTTGAACTAT TAAAATATC TTGT GATATTTGA TTTTTTAATTCTTTT TERM 171 160301 - 160290 - G 71 -4.4 -4.86731 | opp_overlap 160290 GGGGTTCAAATAAAA CAAC TATA GTTG ATAATTTATATTTTT TERM 172 160537 - 160551 + H 75 -4.4 -5.52986 | overlap 160536 AATATTTCTTAGTAT TTTTTT AAA AAAAAA TTTTTTTAATGAAAT TERM 173 160689 - 160673 - g 79 -6.6 -4.66537 | opp_overlap 160672 TTGGCCAATATAAAA GCATCT AAAAA AGATGC ATTAACTTCTGAAAA rpsT 160658 - 160927 + | 30S ribosomal protein S20 TERM 174 160931 - 160974 + T 72 -7.8 -3.45788 | gap 1, opp_overlap 160916 160929 160928 160941, overlap 160933 160938 TCTAAAATATAATTT TTTTA-GAGTATTGCCTCTAA TTT TTAGAAGCAATACTTATAGAA TCTTATCTTGTCAGA TERM 175 160938 - 160966 + T 95 -11.9 -3.37474 | opp_overlap 160929 160928 160941, overlap 160933 160931 TATAATTTTTTTAGA GTATTGCCTCTAA TTT TTAGAAGCAATAC TTATAGAATCTTATC TERM 176 160963 - 160941 - T 78 -10 -2.62515 | opp_overlap 160933 160938 160931, overlap 160929 160928 AATTTTTTTAGAGTA TTGCCTCTAA TTT TTAGAAGCAA TACTTATAGAATCTT dnaJ 162110 - 160977 - | DnaJ protein TERM 177 162180 - 162138 - R 72 -6.4 -4.66609 | gap 1, opp_overlap 162141 162143, overlap 162141 162144 TACCTGATTTAAAAA TAATTA-CACGGGCGCAGA AGTTTA TCTACGCCCGTGCTAGTTT AAAGTCTATAATAAT TERM 178 162141 - 162177 + r 74 -8.1 -3.65693 | gap 1, opp_overlap 162138 162141 162144, overlap 162143 CTGATTTAAAAATAA TTA-CACGGGCGCAGA AGTTTA TCTACGCCCGTGCTAG TTTAAAGTCTATAAT TERM 179 162176 - 162141 - R 100 -11.9 -4.44608 | opp_overlap 162141 162143, overlap 162138 162144 CTGATTTAAAAATAA TTACACGGGCGCAGA AGTTTA TCTACGCCCGTGCTA GTTTAAAGTCTATAA TERM 180 162143 - 162174 + r 78 -10.1 -2.93853 | opp_overlap 162141 162138 162144, overlap 162141 GATTTAAAAATAATT ACACGGGCGCAGA AGTTTA TCTACGCCCGTGC TAGTTTAAAGTCTAT TERM 181 162173 - 162144 - R 100 -15.8 -3.18327 | opp_overlap 162143 162141, overlap 162141 162138 ATTTAAAAATAATTA CACGGGCGCAGA AGTTTA TCTACGCCCGTG CTAGTTTAAAGTCTA dnaK 164136 - 162223 - | DnaK protein TERM 182 163470 - 163493 + g 80 -3.9 -5.72622 | CAAGATGTGTATCTC CATTTGTAG CAAGAA CTTCAAATG TTTTTTCTTTATCCA TERM 183 164330 - 164311 - H 80 -2.2 -6.26417 | overlap 164315 164327 CAGTAGAAAAAAAAA TAAAGTTT TACC AAACTATA ACTGAAAATTATAAG nuoA 164472 - 164876 + | NADH dehydrogenase I chain A nuoB 164910 - 165584 + | NADH dehydrogenase beta subunit TERM 184 165768 - 165782 + G 80 -5.8 -5.13722 | AATAATTTATTTGAT TTCTTT GGT AAAGAA TTTTGTTTTCATCAA TERM 185 166276 - 166260 - g 73 -8.1 -3.33711 | opp_overlap 166260 GATTTAGAAATGGAA GGTTTAA AAT TTAAACC TGAGTTATGGGGTAT nuoCD 165675 - 167477 + | NADH dehydrogenase I chain C/D TERM 186 167661 - 167675 + G 73 -8.6 -3.02144 | opp_overlap 167651, overlap 167651 AGCTATTTATGCTAT TGCAGA AAT TCTGCA TATTAACCCCAGTGA nuoE 167500 - 167988 + | ATP synthase subunit E TERM 187 168396 - 168414 + G 72 -6.8 -4.09243 | opp_overlap 168396 TTTTTAAGAGGAGAA TATGTTCA AGC TGAGCATA TTTTAAAGCAATCTA nuoF 167985 - 169319 + | NADH dehydrogenase I chain F TERM 188 169349 - 169363 + F 78 -4.4 -5.72616 | opp_overlap 169347 169349, overlap 169338 169334 TTTTTATAGAAAATA TTTATT TTA AATAAA TTTTTTTATATAAAT TERM 189 170201 - 170212 + G 70 -5.8 -4.28254 | TCATTATTTAATATG CGAC CTTG GTCG TTTTGGGTATTCACA TERM 190 172081 - 172062 - g 70 -5 -4.75174 | overlap 172066 TATTTAACTGAAAAA CAAATAGG TTTG CCTATTGG AAGAAAAGGATTTCC TERM 191 172077 - 172066 - g 71 -4.4 -4.91473 | overlap 172062 TAACTGAAAAACAAA TAGG TTTG CCTA TTGGAAGAAAAGGAT nuoG 169413 - 172133 + | NADH dehydrogenase gamma subunit nuoH 172145 - 173113 + | NADH dehydrogenase subunit H nuoI 173138 - 173680 + | NADH dehydrogenase subunit I nuoJ 173690 - 174202 + | NADH dehydrogenase I chain J nuoK 174233 - 174535 + | NADH dehydrogenase I chain K TERM 192 175114 - 175134 + G 78 -8.5 -3.83864 | opp_overlap 175113 AGAGAATTTAATAGT TTTAATTTC CAA GAAATTAAA TTCTTATCAAGTTTT nuoL 174532 - 176376 + | NADH dehydrogenase I chain L TERM 193 176974 - 176964 - g 80 -4 -5.61824 | TAAAACTGAAAAAAA GAAA AAT TTTC TAGCTGCTAATAAGT nuoM 176473 - 177990 + | NADH dehydrogenase I chain M nuoN 178048 - 179457 + | NADH dehydrogenase I chain N TERM 194 179510 - 179495 - f 72 -3.4 -5.6473 | overlap 179487 179505 ATAATACTAAAAAAA TTTTTA CTAA TAAAAA AGGTATTTTTAGTGG TERM 195 179545 - 179557 + F 80 -4.9 -5.50499 | TTTTTTATATACTAT TACTT TTG AAGTA TTTTTTTCGATCTAA TERM 196 179636 - 179608 - f 81 -6.3 -5.4251 | opp_overlap 179608 TGTATATACAAAAAA TAAAAAATAATTT TTA AAATTTTTTTTTA TTATAATTTTTATAT TERM 197 180017 - 179992 - f 84 -7.1 -5.26316 | gap 1, opp_overlap 179991 179992 179995, overlap 179995 CTAGTTCATAAAAAA CAG-TATTAGAA TAT TTCTAATATCTG ATTTTTTAGAATAAG TERM 198 180333 - 180367 + F 80 -4.6 -5.63517 | opp_overlap 180337 180340 180352, overlap 180317 180315 180337 180352 TAGTTATATTTATAA TTAATAATATATTTTA CAA TAAAAAATATTAATAA TTTTTTATTTAAACA TERM 199 180451 - 180438 - f 73 -2.5 -5.9667 | opp_overlap 180409 AAAAATATAAAAAAA TAAAA AATT TTTTA CCATAACGTATTATA TERM 200 180857 - 180877 + G 75 -8.4 -3.41416 | overlap 180855 180844 TAGAATTAATGGGTT TGTTCTTC ATGAA GAAGAACA TATTGATTCTTTTCA TERM 201 181335 - 181345 + G 72 -6.8 -4.12475 | GTACCATTATCGAGT GCAG CTA CTGC TTTATCTACTCTATA folC 180582 - 181817 + | dihydrofolate synthase prsA 183343 - 182396 - | ribose-phosphate pyrophosphokinase ychB 184347 - 183463 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 202 183604 - 183591 - G 70 -3.1 -5.33866 | CAAATTCAGAAAAAA CACAA GATC CTGTG CCAGTCATGCGTGAA TERM 203 184507 - 184521 + H 72 -4.4 -5.40474 | opp_overlap 184507 184511 ATACATTGTTTAATA TTAATT AAA AATTAA TTTTTTTAAAACACT TERM 204 185213 - 185197 - g 75 -5.2 -4.87318 | opp_overlap 185197 CCTAAAACTGAAAAA GAAGAA ATTAA TTCTTC TGATTTAAAAATTGA prfA 184555 - 185640 + | peptide chain release factor 1 hemK 185637 - 186470 + | HemK protein ychA 186630 - 187439 + | hypothetical protein nadE 188253 - 187447 - | NAD(+) synthetase ackA 188337 - 189554 + | acetate kinase TERM 205 190620 - 190594 - g 100 -7.4 -5.71712 | opp_overlap 190565, overlap 190565 190596 TTTTACAGAAAAAAA TACAATAGAGAT TTT ATCTCAATTGCA AAACTTTAACTTTGA TERM 206 190618 - 190596 - g 80 -7.8 -4.50122 | opp_overlap 190565, overlap 190565 190594 TTACAGAAAAAAATA CAATAGAGAT TTT ATCTCAATTG CAAAACTTTAACTTT pta 189599 - 191725 + | phosphate acetyltransferase yfaE 192020 - 191757 - | 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance (YfaE) TERM 207 191823 - 191845 + g 91 -11.4 -3.07291 | opp_overlap 191823 191827, overlap 191828 191839 TTCTCGTTCTTTAAA TAAAGCAGCC ATA GGCTGTTTTA TTAAATAAAATACTT TERM 208 191845 - 191823 - G 80 -9.2 -3.53012 | opp_overlap 191823 191828 191839, overlap 191827 TTCTCGTTCTTTAAA TAAAGCAGCC ATA GGCTGTTTTA TTAAATAAAATACTT TERM 209 191841 - 191827 - G 70 -5.6 -4.41348 | opp_overlap 191823 191828 191839, overlap 191823 CGTTCTTTAAATAAA GCAGCC ATA GGCTGT TTTATTAAATAAAAT TERM 210 191828 - 191840 + g 93 -9.1 -4.67982 | opp_overlap 191827 191823, overlap 191823 191839 GTTCTTTAAATAAAG CAGCC ATA GGCTG TTTTATTAAATAAAA nrdB 193153 - 192023 - | ribonucleotide-diphosphate reductase beta subunit nrdA 195506 - 193221 - | ribonucleotide-diphosphate reductase alpha subunit gyrA 198071 - 195579 - | DNA gyrase subunit A TERM 211 196133 - 196156 + g 90 -3.3 -5.94597 | TTCCTGCAAATCTCG GTTTTTTAA ATTGAC TTAAAGAAC TTTTTTTTACTATTC TERM 212 196370 - 196354 - G 71 -4.5 -4.91109 | CCGCGACTAGAAAAA CATAATA TAG TATCATG CGTATTTGCTATTAC TERM 213 197013 - 196991 - G 77 -9.3 -2.8294 | opp_overlap 196991, overlap 196988 TACGTCTTATAATGA TTTCTTGTC TATGT GACAAGAAA TTTTTTAATATCTCT TERM 214 196991 - 197013 + g 100 -9.3 -5.25893 | opp_overlap 196991 196988 TACGTCTTATAATGA TTTCTTGTC TATGT GACAAGAAA TTTTTTAATATCTCT TERM 215 198601 - 198583 - g 83 -7.6 -4.76087 | TAGAGAAGAAACAAA TAAAAAAC CAA GTTTTTTA TCAAATTTTTTTAAA TERM 216 198684 - 198670 - g 78 -2.8 -5.83822 | CATATTGAAAAAAAA GGAAAA TAT TTTACC CTCTAACTATTCCAG yba2 198338 - 199054 + | hypothetical protein TERM 217 199168 - 199133 - T 100 -11.4 -5.46276 | opp_overlap 199137 199159 AATAGATATAAAAAA TAAAGCCAGCATAAAA TATT TTTTTTGCTGACTTTA GCTCTCATTAAGAAT ahpC 199769 - 199176 - | alkyl hydroperoxide reductase TERM 218 199690 - 199710 + g 81 -7 -4.63993 | opp_overlap 199690, overlap 199703 GAATACTTTTTAAGA TCAAATTG CTCAA CAATTTGA TTGTTTTTTAAAATT TERM 219 199703 - 199713 + g 71 -4 -5.10029 | opp_overlap 199690, overlap 199690 GATCAAATTGCTCAA CAAT TTG ATTG TTTTTTAAAATTGCT TERM 220 200495 - 200484 - R 95 -4.4 -6.71862 | opp_overlap 200478 200484 AAAACAAAAAAAAAA CCAA TTAA TTGG TTTTTGATTTAAAAA TERM 221 200496 - 200543 + r 79 -9.8 -3.23855 | gap 1, opp_overlap 200511, overlap 200478 200511 AAACCAATTAATTGG TTTTTG-ATTTAAAAATAGAAAA AAT TTTTCTATTTTTAAATGTGAAAA ATTATTTTTGAAAAA TERM 222 200527 - 200511 - R 76 -6.7 -4.65895 | opp_overlap 200496 200511 TTTTTGATTTAAAAA TAGAAAA AAT TTTTCTA TTTTTAAATGTGAAA TERM 223 200511 - 200527 + r 76 -6.7 -4.70659 | opp_overlap 200511, overlap 200496 TTTTTGATTTAAAAA TAGAAAA AAT TTTTCTA TTTTTAAATGTGAAA grpE 201149 - 200583 - | heat shock protein GrpE2 TERM 224 200723 - 200733 + g 71 -2.6 -5.47399 | CGTGAATGTCAGGAT TAAA AAC TTTA TTTTTTTGACCTTCA TERM 225 201819 - 201831 + G 82 -9.1 -3.77832 | TTGTTTCAACACCCA CCGGT TCT ACCGG TTATTCACTTTCGGC yfjB 201266 - 202144 + | NAD kinase monomer (YfjB) smpA 202277 - 202585 + | small protein A grxD 203122 - 203448 + | glutaredoxin 4 (YdhD) rnt 204257 - 203592 - | ribonuclease T TERM 226 204701 - 204683 - g 91 -6.8 -5.54907 | TTTAGAAAAGAAAAA TGCATTAC GTA ATAATGCA GGAGGTCATATAAAT sodA 204477 - 205088 + | superoxide dismutase TERM 227 205183 - 205202 + F 91 -6.6 -5.77988 | opp_overlap 205173 205183, overlap 205173 ATAATTTTTAAAAAA CATATAAT ATAT ATTATATG TTTTTTTATATCTCT TERM 228 205202 - 205183 - f 79 -6.6 -5.06103 | opp_overlap 205183 205173, overlap 205173 ATAATTTTTAAAAAA CATATAAT ATAT ATTATATG TTTTTTTATATCTCT pth 205276 - 205809 + | peptidyl-tRNA hydrolase TERM 229 206318 - 206301 - g 87 -2.7 -6.2845 | overlap 206303 AATTACAAAAAAAAA CATTGTT AAAA AACAAAG AAACACAAGAAAAAA ychF 205850 - 206938 + | GTP-binding protein thrC 208303 - 207014 - | threonine synthase thrB 209239 - 208310 - | homoserine kinase thrA 211710 - 209260 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 230 210124 - 210139 + g 70 -4.8 -4.67234 | ATTAAATTTTTGAGT TGATTT TTTA AAATCA TTTTTCCAGTTAGAT TERM 231 210288 - 210314 + g 78 -2.4 -5.7946 | opp_overlap 210312, overlap 210312 TACTGCCAATTCCAC CTATTCCTAT TAAAAAC ATATGAATAG TTTTTTTATTAAAAA TERM 232 211173 - 211189 + g 84 -3.8 -5.86332 | opp_overlap 211173 TATTACTTTGATTAA TATTCA TGTTC TGAATA TTTTTTTTAGATTCA TERM 233 211878 - 211902 + H 80 -9.5 -3.7948 | overlap 211877 TAAATACGTAAAGTG TATTACCTAAT TAT ATTAGGTAGTA TCTTTTAATATAATT TERM 234 212163 - 212175 + H 73 -4.9 -5.10497 | opp_overlap 212163, overlap 212167 ATATTAAAAAGAACT GTTTT TTA AAAAC TTTTTTAGATGCATT TERM 235 212300 - 212314 + H 75 -4.4 -5.63857 | opp_overlap 212302, overlap 212291 212297 ATTGTGTATTTCTAA TATAAT ATT ATTATA TTTTTTTAAGTTTTT TERM 236 212803 - 212821 + G 70 -3.2 -5.31877 | overlap 212804 CGTTGATTTTATAGG TTTTTCTA TCT TAGAAAAC TTTTTTATAGTAGGT hpt 212369 - 212905 + | hypoxanthine phosphoribosyltransferase TERM 237 212917 - 212929 + T 78 -3.5 -5.88565 | opp_overlap 212907 212911, overlap 212911 ATAAGTAAATTTTAA TAATT TAA AATTA TTTTTTTGTTATCAA panC 213770 - 212913 - | pantoate-beta-alanine ligase TERM 238 213277 - 213289 + g 80 -6.3 -4.99861 | opp_overlap 213276 ATCATATAATTCAAC TCCTT TAC AAGGA TTTTTATAATTAATA TERM 239 213686 - 213700 + g 93 -4.3 -6.01187 | opp_overlap 213679 GTAAATTACCCATTG TAGGA ACTAG TCCTA TTTTTTTATTTGATT panB 214576 - 213785 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase dksA 215147 - 214692 - | DnaK suppressor protein TERM 240 215843 - 215853 + G 71 -4 -5.06414 | TAGACAAAATGCATT TTGA AGC TCAA TTTTTATTAGGAGAG truA 215404 - 216204 + | pseudouridylate synthase I TERM 241 217509 - 217497 - g 70 -4.9 -4.77908 | AAAAGAAAAAAAAGA CTAAA GGA TTTAG AAGTTGCTATGATCG mrcB 216276 - 218558 + | penicillin-binding protein 1b TERM 242 218578 - 218568 - f 72 -2.6 -5.79595 | TTTTAAAATAAAAAA TAAA ATT TTTA TTCAAGAGAGATGGT secA 218788 - 221415 + | translocase TERM 243 221641 - 221651 + G 71 -2.6 -5.51402 | GTTGGAATTATTGTC TTAA AAA TTAA TTTTTTTCAATATAT mutT 221491 - 221865 + | mutator MutT protein yacE 222501 - 221848 - | dephospho-CoA kinase TERM 244 221958 - 221968 + g 82 -2.6 -6.09888 | opp_overlap 221958 AAATATATAGATTAA TTTT TTT AAAA TTTTTTTTATTAAAA TERM 245 222044 - 222062 + g 77 -6.1 -4.71223 | opp_overlap 222040, overlap 222040 AACGCAATAATTTTT TTAGCTT CTAAA AAGCTAA TTTTGTCTCTTCTAA guaC 222557 - 223606 + | guanosine 5'-monophosphate oxidoreductase TERM 246 223684 - 223641 - f 77 -7.9 -4.16943 | opp_overlap 223641 TTTTACATTTTAAAA TCAATAAAATTAATTATAC TTATAT ATATATTTAATTTTATTGA TTTTTTTTAGATGTT TERM 247 223641 - 223684 + F 95 -7.2 -5.85178 | opp_overlap 223641 TTTTACATTTTAAAA TCAATAAAATTAATTATA CTTATATA TATATTTAATTTTATTGA TTTTTTTTAGATGTT aceE 223834 - 226497 + | pyruvate dehydrogenase E1 component aceF 226501 - 227718 + | dihydrolipoamide acetyltransferase TERM 248 228101 - 228084 - g 100 -5.7 -5.9873 | GTATGAGAAAAAAAA GAAAAAT AAGA ATTTTTC AAGGCCATGCTATTT TERM 249 228308 - 228282 - g 78 -2.5 -5.88471 | gap 1 TATCATTAAAAAAAA TACCTAACAATT TTTT AATTA-TAGGTA GTGGGATTATTGGTT lpdA 227762 - 229183 + | dihydrolipoamide dehydrogenase TERM 250 229190 - 229204 + T 78 -4.4 -5.75342 | AATAAATAATGATTT TTTTTT ATT AAAAAA TTTTTTTTAGAAAAA TERM 251 229220 - 229256 + T 100 -14.1 -5.86061 | opp_overlap 229220 229225, overlap 229255 TTTTTTTTAGAAAAA GAAAAGATTATAGAAAT TAA ACTTCTATAATCTTTTC TTTTTTTTAATAAGA TERM 252 229256 - 229220 - T 100 -16.3 -4.82901 | opp_overlap 229220 229255, overlap 229225 TTTTTTTTAGAAAAA GAAAAGATTATAGAAAT TAA ACTTCTATAATCTTTTC TTTTTTTTAATAAGA TERM 253 229251 - 229225 - T 100 -10.4 -5.35224 | opp_overlap 229220, overlap 229220 TTTAGAAAAAGAAAA GATTATAGAAAT TAA ACTTCTATAATC TTTTCTTTTTTTTAA speD 230153 - 229356 - | S-adenosylmethionine decarboxylase proenzyme speE 231032 - 230172 - | spermidine synthase pfs 232006 - 231308 - | 5'-methylthioadenosine nucleosidase yadR 232414 - 232070 - | essential respiratory protein A (YadR) ftsZ 233802 - 232648 - | cell division protein FtsZ TERM 254 233870 - 233900 + r 78 -8.6 -3.90744 | opp_overlap 233867 TGTTTTTAAAATTCT TTTTTAAACCAATT ATT AATTCGTTTAAAAA TTATTTCAAAAAAAG ftsA 235116 - 233860 - | cell division protein FtsA TERM 255 235251 - 235241 - R 72 -2.6 -5.76633 | overlap 235248 235250 GTATATATAAAAAAA TATA ACA TATA AGATAAATATCTTAT murC 237685 - 236231 - | UDP-N-acetylmuramate-alanine ligase TERM 256 236881 - 236891 + g 71 -4 -5.05113 | TTATATAAAAATGTC CAAT AAA ATTG TTTTGTTTATATAAA TERM 257 237645 - 237673 + g 70 -4.8 -4.71186 | opp_overlap 237649, overlap 237633 237633 TTATTTTTTTTTTCA GAAATAAAAAAA TTAAT TTTTTTTATATC TTTTATATTCATACT murG 238792 - 237728 - | UDP-N-acetylglucosamine-N-acetylmuramyl transferase ftsW 239988 - 238789 - | cell division protein FtsW murD 241307 - 239985 - | UDP-N-acetylmuramoylalanine-D-glutamate ligase TERM 258 240207 - 240228 + g 70 -3.2 -5.27399 | AAAACAGTAAATTTT TATTTTTA AAGTTC TAAAAATA TTTTTTAATATATTA mraY 242380 - 241307 - | phospho-N-acetylmuramoyl-pentapeptide- transferase murF 243740 - 242364 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase TERM 259 242444 - 242458 + g 100 -3.6 -6.67286 | TACTACGAGATCCTT TAACTA ATA TGGTTA TTTTTTTTTTCTTTA murE 245233 - 243737 - | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase TERM 260 245249 - 245262 + r 72 -3.9 -5.37593 | TCAGTTCCTTTTATT TGATT TTAA AATCA TTTTTTGATTTGACA ftsI 246973 - 245234 - | cell division protein FtsI TERM 261 245353 - 245337 - G 78 -10.1 -2.67364 | opp_overlap 245336, overlap 245336 245335 ATATTACTAAAAACT GGAGCAG AAA CCGCTCC TCCATAATATTTTTT TERM 262 246937 - 246953 + g 86 -2.3 -6.28401 | overlap 246939 TATAATTTATTTGTT TTGATTT TAA AAATCTA TTTTTTTCTTTTTTA TERM 263 246939 - 246951 + g 70 -4.9 -4.70159 | overlap 246937 TAATTTATTTGTTTT GATTT TAA AAATC TATTTTTTTCTTTTT TERM 264 247005 - 247021 + r 81 -5.3 -5.67063 | opp_overlap 247016, overlap 247001 ATCAATGTACATTTA TTTTTAT AAA ATAAAAA TTTTTTTATGCTAAA ftsL 247291 - 247038 - | cell division protein yabC 248232 - 247294 - | hypothetical protein TERM 265 247558 - 247569 + g 71 -4.4 -4.86939 | overlap 247561 AAGTATTTTTAGCGT GCTT TCTA AAGC TTTTTGAATTTCTTC TERM 266 247731 - 247742 + g 73 -4.4 -5.06414 | GACTTCTACGTTTGA TAGC ATAA GCTA TTTTTCTTGAAAAAC ilvH 248830 - 248354 - | acetolactate synthase small subunit ilvI 250550 - 248835 - | acetolactate synthase large subunit TERM 267 251447 - 251458 + H 72 -3 -5.79635 | opp_overlap 251447, overlap 251437 TTGACTTCCGGAAAG GAAA ATTT TTTC TTTTATTTTTTTTTT htrA 252168 - 253604 + | protease Do precursor TERM 268 253617 - 253640 + T 100 -8 -5.77677 | overlap 253618 TAATAATTTTATAGT TCCGCCCGAA CAAA TACGGGCGGC TTTTTTCTTATTTTA TERM 269 253618 - 253639 + T 95 -11.5 -4.02946 | overlap 253617 AATAATTTTATAGTT CCGCCCGAA CAAA TACGGGCGG CTTTTTTCTTATTTT dapD 254472 - 253648 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 270 253946 - 253928 - G 73 -5.4 -4.71426 | CGGGCACCAATAAAA CAATTATC TTC AATAATTG TAGGATTATTTTGAA map 255327 - 254533 - | methionine aminopeptidase rpsB 255590 - 256324 + | 30S ribosomal protein S2 TERM 271 256911 - 256894 - g 78 -5.7 -4.86731 | GTTCGTTAAATAAAA CAATATT AAAA AATATTG CAATGCATATAGCTG tsf 256401 - 257207 + | elongation factor Ts TERM 272 257583 - 257597 + G 72 -7.2 -3.91144 | opp_overlap 257585 GTCTGATGTCTGCAA TACCAT TAA ATGGTA TTTGTGAGATATACA pyrH 257258 - 257986 + | uridylate kinase frr 258066 - 258623 + | ribosome recycling factor dxr 258706 - 259902 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase uppS 259995 - 260750 + | undecaprenyl pyrophosphate synthetase TERM 273 261525 - 261513 - g 75 -3.5 -5.4659 | overlap 261519 GAACAGAAATAAAAA TTAAT AGT ATTAA AATACTCGGCGTTCA yaeT 260984 - 263386 + | YaeT fabZ 263513 - 263968 + | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase TERM 274 264183 - 264197 + G 71 -7.2 -3.82084 | opp_overlap 264183 264182 264185 ATATGGCTCATAAAC TAGGTT TAA AACCTA TTATTGGTATTACAG TERM 275 265259 - 265238 - g 75 -5.9 -4.65895 | opp_overlap 265238, overlap 265240 TTTTGTATGGAAAAA CGTGATCAA GTAA TTGATCATG TTTCAGAGATATATG TERM 276 265238 - 265259 + G 74 -8.1 -3.57119 | opp_overlap 265238 265240 TTTTGTATGGAAAAA CGTGATCAA GTAA TTGATCATG TTTCAGAGATATATG dnaE 264005 - 267490 + | DNA polymerase III alpha chain TERM 277 267554 - 267520 - T 85 -8.2 -5.09259 | opp_overlap 267520 267522 267531, overlap 267522 267545 TATTCTAAAATAAAA TTTTAATCAAATTTTT TAA AAAAATTTGATCAATA ATATTGTCAAGTAGA TERM 278 267522 - 267552 + T 71 -8.6 -2.8055 | opp_overlap 267520 267522 267545, overlap 267520 267531 TTCTAAAATAAAATT TTAATCAAATTTTT TAA AAAAATTTGATCAA TAATATTGTCAAGTA TERM 279 267552 - 267522 - T 80 -10.8 -2.77598 | opp_overlap 267522 267520 267531, overlap 267520 267545 TTCTAAAATAAAATT TTAATCAAATTTTT TAA AAAAATTTGATCAA TAATATTGTCAAGTA proS 269336 - 267618 - | prolyl-tRNA synthetase TERM 280 269924 - 269946 + G 76 -4.2 -5.55855 | opp_overlap 269924 269927, overlap 269927 269929 ATTTATTAAAAATAT TAATGTCTCT AAA AGAGATACTA TTTTCTTTTTTTCCA flhB 269677 - 270828 + | flagellar biosynthetic protein FlhB TERM 281 271708 - 271756 + G 83 -6.9 -4.93696 | TATTTTATTAAGTGC GATAGTATTAGGAGTTCTTGG TTTAGTT CCAGGAATGCCAAATATTATC TTTTTAGTATTTACA flhA 270821 - 272911 + | flagellar biosynthetic protein FlhA argS 274759 - 273035 - | arginyl-tRNA synthetase TERM 282 273567 - 273598 + g 80 -7.5 -4.50976 | gap 1 ATTAAACGCATCGCC CTTTCTGTAGCTTC ATCAA GAAG-TGCAGAAAG TTTTATAGTATCACC TERM 283 275170 - 275148 - R 74 -7.9 -3.69216 | overlap 275146 TTTTTATTTAAAATA TCTTAAAGA TTTTT TCTTTAAGA TTAAAAAAGTTTTTC TERM 284 275816 - 275796 - R 74 -8.3 -3.5594 | opp_overlap 275791 AAGTCAGGTGTGAAA TCCCTAGGC TCA ACCTAGGAA CTGCATTTGAAACTG TERM 285 276699 - 276716 + r 75 -9.1 -3.07291 | opp_overlap 276699 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT gloB 277698 - 276943 - | probable hydroxyacylglutathione hydrolase TERM 286 277414 - 277396 - G 89 -7.6 -5.14525 | opp_overlap 277400, overlap 277408 277411 AAAAAAAACATAAAA TATCTTAT CTA ATAAGATA ATCCTATCTCCATGA TERM 287 277665 - 277682 + g 77 -2.1 -5.90981 | gap 1, opp_overlap 277664 277679, overlap 277679 GAACCCAAACATAGT TATCTGAT AAA ATC-GATA TTTTTTTTAATATCA dnaQ 278261 - 278974 + | DNA polymerase III epsilon chain TERM 288 279089 - 279073 - f 70 -7.9 -3.21593 | CAGTTGGTTAGAATA CCGGCCT GTC ACGCCGG GGGTCGCGGGTTCGA TERM 289 279274 - 279256 - g 75 -3.3 -5.38348 | overlap 279249 AAAAATATTAAAAAA TTTTTTA GAAGA TAAAAAA CAAATAGAAAATATT lpcA 279200 - 279781 + | phosphoheptose isomerase TERM 290 279983 - 279967 - g 75 -3.7 -5.41143 | opp_overlap 279966, overlap 279969 GATTGGTTAAAAAAA TTCATTC TTG GAATGGA ATCATTGCTGTAAGT gpt 279888 - 280364 + | xanthine phosphoribosyltransferase grpE1 280466 - 281050 + | heat shock protein GrpE1 TERM 291 281062 - 281114 + T 72 -6.2 -4.65078 | gap 1 ATAAAAATAATATGT TTTTTAGGTTTAATAATATTGTAAA GTAT TTTA-ATTGTTATTAAATCTAAAAA TTTTATTAAAAATAT yfjF 281428 - 281129 - | hypothetical protein TERM 292 281417 - 281429 + g 72 -4.9 -4.98758 | GACAACGGTTACTTT TATGA TCT TCATA TTTTTATAAATTTTT smpB 281522 - 282010 + | SsrA-binding protein TERM 293 282100 - 282088 - g 72 -3.3 -5.28942 | overlap 282089 TATGCTAAAGAAAAA GGGGA AAT TCCCA TAGGTGCAATATTAG yfhC 282019 - 282504 + | hypothetical protein YfhC acpS 282885 - 282505 - | holo-[acyl-carrier protein] synthase TERM 294 282841 - 282831 - G 71 -2.6 -5.45726 | CATACTTTAAAAAAA TATT TTT AATA CGTAATATTTCTACA TERM 295 282940 - 282987 + r 83 -10.4 -3.58176 | opp_overlap 282935 282934 282950, overlap 282939 282941 282969 282971 TAAAAATTATTGATT TTTTTTAAAATCAGTTAAAAAT TTGA ACTTTTAACTAATTTTAAAAAA TTAGTTATATTATTC TERM 296 282971 - 282994 + r 76 -8.4 -3.57523 | opp_overlap 282950, overlap 282940 282969 AAAAATTTGAACTTT TAACTAATTT TAAA AAATTAGTTA TATTATTCTATTAAT era 283862 - 283011 - | GTP-binding protein Era rnc 284539 - 283859 - | ribonuclease III lepB 285614 - 284670 - | signal peptidase I TERM 297 284888 - 284900 + g 72 -4.9 -5.00027 | GCATATTTTTTTGTT GAAAA TAA TTTTC TTTTGTATTTTTAAT lepA 287462 - 285630 - | GTP-binding protein LepA TERM 298 286697 - 286714 + g 78 -8.5 -3.73953 | TTTTATTTAATTTTT TAGGTGT AAAA ACACCTA TTTGATCAACATAAT TERM 299 287866 - 287878 + G 70 -4.9 -4.72986 | opp_overlap 287864 287873, overlap 287864 AATTAAATATATATC TTCAT AAG ATGAA TTTTTCCTCAGAATA trmU 287658 - 288764 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ycfC 288800 - 289435 + | predicted lysogenization regulator (YcfC) purB 289474 - 290844 + | adenylosuccinate lyase TERM 300 291514 - 291503 - g 91 -2.2 -6.32216 | ACACATAAAAAAAAA CACC CGGC AGTG CAAGCATTTCGTTAT mltE 290868 - 291533 + | membrane-bound lytic murein transglycosylase E fabI 291647 - 292429 + | enoyl-[acyl-carrier-protein] reductase (NADH) rnb 292616 - 294565 + | exoribonuclease II ychE 294673 - 295320 + | hypothetical protein TERM 301 295924 - 295900 - g 72 -6.7 -4.14158 | GACACAAATAAAAGA TTTTAATTCAA ATG TTAAATTAAAA GATGTAAGGTTTATT lipB 295358 - 295993 + | lipoate-protein ligase B TERM 302 296199 - 296161 - g 90 -5.6 -5.69023 | overlap 296168 AAAATATTAAAAAAA TTAAATATTATCAATATT AAA AATCTTGATAACATTAAA GAAAAATTAAAAAAA lipA 296113 - 297084 + | lipoyl synthase TERM 303 297851 - 297818 - g 76 -8.4 -3.56346 | opp_overlap 297825, overlap 297821 AGAATATAAAATAGA TTACATAGTAATAG GACGTT CTATTACTATGTCA AAAAATCCAATTAAA TERM 304 297848 - 297821 - g 80 -10.1 -2.88375 | opp_overlap 297825, overlap 297818 ATATAAAATAGATTA CATAGTAATAG GACGTT CTATTACTATG TCAAAAAATCCAATT pyrF 297189 - 297899 + | orotidine 5'-phosphate decarboxylase TERM 305 298389 - 298374 - g 74 -2.6 -5.66989 | opp_overlap 298379 TAAATATTAAAAAAA TTCGTT TATT AACAAA TAATCCATTTAAAGT ribA 297947 - 298531 + | GTP cyclohydrolase II protein hns 299042 - 298635 - | DNA-binding protein H-ns cls 300848 - 299388 - | cardiolipin synthetase TERM 306 300510 - 300522 + g 77 -6.3 -4.67353 | GCTTTTAATTCCGTG TAGAC CTT GTCTA TTTTTACATAACTGA TERM 307 300889 - 300902 + r 77 -2.5 -6.12458 | TGTCAAAAGATCTTC TATTT AATT AAATA TTTTTTATTTTTTTA yciA 301636 - 301229 - | acyl-CoA thioesterase (YciA) TERM 308 301331 - 301341 + g 71 -2.6 -5.53991 | GTATTGACCTAATGG TTTA GAA TAAA TTTTTTTAATCCATA yciB 302206 - 301673 - | predicted inner membrane protein (YciB) yciC 302977 - 302234 - | predicted inner membrane protein (YciC) TERM 309 302948 - 302937 - G 81 -3 -5.75342 | overlap 302913 TTTTTGTAAAAAAAA TGAT GCGT ATCA TGACGTAATTTATTT trpA 303891 - 303082 - | tryptophan synthase alpha chain TERM 310 304638 - 304657 + r 71 -7.2 -3.82503 | opp_overlap 304631, overlap 304636 CCCATTAATTTCATA CGAAACAC ATTT GTGTTTTG TCTTTTAATATCTTT TERM 311 304853 - 304863 + r 72 -2.6 -5.74684 | TAGTAAATCTTCTCT TTTA AGA TAAA TTTTTGTTTTTGTTC trpC 306476 - 305115 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 307485 - 306457 - | anthranilate phosphoribosyltransferase TERM 312 307596 - 307640 + H 87 -10.5 -3.96148 | opp_overlap 307602 307611, overlap 307605 307611 ATGTGAATAATTCAA TTTAAATTTTAAAAACTTTAT TTT ATAAAGTTTTTAAAATCAAAA TTTATACTAAAAAAC TERM 313 307634 - 307602 - H 100 -13.9 -3.78811 | opp_overlap 307596 307605 307611, overlap 307611 ATAATTCAATTTAAA TTTTAAAAACTTTAT TTT ATAAAGTTTTTAAAA TCAAAATTTATACTA TERM 314 307611 - 307625 + H 72 -5.8 -4.62069 | opp_overlap 307602 307611, overlap 307605 307596 TTTAAATTTTAAAAA CTTTAT TTT ATAAAG TTTTTAAAATCAAAA TERM 315 307625 - 307611 - H 72 -5.8 -4.70879 | opp_overlap 307605 307611 307596, overlap 307602 TTTAAATTTTAAAAA CTTTAT TTT ATAAAG TTTTTAAAATCAAAA TERM 316 308472 - 308487 + G 70 -5.4 -4.60255 | TGTTTTTTTAATTTT TCCAGT GATT GCTGGA TTTTTAGAAAATTAT yedA 307720 - 308643 + | hypothetical protein TERM 317 309227 - 309217 - g 82 -2.6 -6.07627 | ATGTTCAAAAAAAAA TAAA TGG TTTA AAGGTGTTTTATGTG yciL 308672 - 309424 + | 23S rRNA pseudouridine synthase (YciL) sohB 309499 - 310509 + | possible protease SohB TERM 318 310771 - 310745 - g 87 -2.4 -6.12458 | overlap 310746 310759 GAAAAAAACAAAAAA TTTTTAAATGAA AAT TTCATTGAAAAG ACTAATGAGAATAAA topA 310595 - 313180 + | DNA topoisomerase I suhB 314032 - 313232 - | extragenic suppressor protein SuhB TERM 319 313687 - 313698 + g 76 -4.4 -5.26119 | opp_overlap 313687 TAGGATCATATATTA CAGA AATT TCTG TTTTATTTTTCACGA yfgB 314279 - 315370 + | 23S rRNA m2A2503 methyltransferase (YfgB) gcpE 315421 - 316527 + | GcpE protein TERM 320 317320 - 317302 - g 70 -6.8 -3.95554 | overlap 317300 317306 TCATGGAATAAAATA TAAATGCA ATC CGCATTTA GTAAGAGGATTAGAC hisS 316553 - 317824 + | histidyl-tRNA synthetase glyA 317884 - 319137 + | serine hydroxymethyltransferase bioD 319899 - 319225 - | dethiobiotin synthetase TERM 321 320169 - 320193 + r 76 -6 -4.99861 | opp_overlap 320171 320187, overlap 320187 AGAAGAATTTCCCAA TATTTTATTT GAAGA AAATAAAATA TTTTTATGATTAATA bioB 321294 - 320263 - | biotin synthetase TERM 322 321244 - 321260 + g 70 -2.3 -5.50774 | opp_overlap 321236 321244, overlap 321238 CATAAGATTAAAAAA TGGTTTT TTA AAAAGCA TTTTTGTTTCTTCTA bioA 321373 - 322659 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase ybhE 323672 - 322668 - | 6-phosphogluconolactonase (YbhE) mfd 326234 - 323796 - | transcription-repair coupling factor TERM 323 327115 - 327101 - g 78 -7.2 -4.47259 | overlap 327095 ACTATAATATTAAAA GTGTTT TAA AAACAC TTAAGCCTGGATATT lolC 326707 - 327906 + | LolCDE ABC lipoprotein transporter (YcfU) lolD 327899 - 328585 + | LolCDE ABC lipoprotein transporter (YcfV) TERM 324 328651 - 328636 - f 82 -4.8 -5.71983 | TTAATTACAAAAAAA TTTTCT CTTA AGAAAA ACAAAAATTATTTAA TERM 325 328863 - 328853 - f 75 -2.6 -5.9873 | GTATGATAAAAAAAA TAAA TAT TTTA CCAGGAATTACTTAT gapA 329910 - 330920 + | glyceraldehyde 3-phosphate dehydrogenase A TERM 326 331014 - 331056 + T 87 -8.9 -4.62904 | gap 1, opp_overlap 331020 331022, overlap 331020 331055 331055 GATGGGTATATTTTT TATATATAGCAGTATTAATT TTTA ATTTAATACTGCTAT-TATA TTTTTAAAAATATTT TERM 327 331020 - 331051 + T 87 -10.4 -4.07746 | opp_overlap 331020 331022, overlap 331014 TATATTTTTTATATA TAGCAGTATTAATT TTTA ATTTAATACTGCTA TTATATTTTTAAAAA TERM 328 331051 - 331020 - T 81 -10.4 -2.88249 | opp_overlap 331014 331020, overlap 331022 TATATTTTTTATATA TAGCAGTATTAATT TTTA ATTTAATACTGCTA TTATATTTTTAAAAA TERM 329 331049 - 331022 - T 72 -8.6 -2.9914 | opp_overlap 331020 331014, overlap 331020 TATTTTTTATATATA GCAGTATTAATT TTTA ATTTAATACTGC TATTATATTTTTAAA TERM 330 331236 - 331258 + T 74 -9.4 -2.91276 | opp_overlap 331235 331234 331232 331245, overlap 331224 331235 TTCTAATAAAATATC CTTTATTAAT TTT ATTAATAAAG ATTTATAAAAAAAAA TERM 331 331496 - 331476 - T 89 -8.5 -4.74504 | ATGTGAATTGAAAAA TTTAGTTTA AAA TAAACTAAA AAAGTCTATTATTCT TERM 332 331503 - 331519 + T 81 -5.3 -5.5762 | TAAACTAAAAAAGTC TATTATT CTA AATAATA TTTTTTATATTTAAT fldA 332045 - 331530 - | flavodoxin phrB 332252 - 333703 + | deoxyribodipyrimidine photolyase TERM 333 333838 - 333854 + G 71 -8.1 -3.20302 | opp_overlap 333853, overlap 333829 333837 333834 GTGACTGCTTGTCAG GCTTTAT TAG ATAAAGC ATTATTTTATAATGC TERM 334 333869 - 333853 - g 80 -8.1 -4.08706 | opp_overlap 333838 333837 333834 GCTTTATTAGATAAA GCATTAT TTT ATAATGC CGATACTTTAATAGT ybgI 333700 - 334443 + | conserved metal-binding protein (YbgI) TERM 335 335125 - 335115 - g 74 -2.6 -5.60689 | CTATAGAAGAAAAAA TAAA TTT TTTA AAAGAATTAACTTAT sucA 334568 - 337297 + | 2-oxoglutarate dehydrogenase E1 component TERM 336 338319 - 338337 + G 80 -8.2 -4.07912 | overlap 338309 338320 338320 TAATGGGTGGCAATT TCACCATT ACT AATGGTGG TGTTTTTGGTTCCTT TERM 337 338320 - 338336 + G 78 -9.5 -3.03121 | overlap 338309 338319 338320 AATGGGTGGCAATTT CACCATT ACT AATGGTG GTGTTTTTGGTTCCT TERM 338 338320 - 338339 + G 72 -5 -4.93547 | overlap 338309 338320 338319 AATGGGTGGCAATTT CACCATTA CTAA TGGTGGTG TTTTTGGTTCCTTAA sucB 337313 - 338575 + | 2-oxoglutarate dehydrogenase E2 component gpmA 338673 - 339368 + | phosphoglycerate mutase pfkA 339552 - 340514 + | 6-phosphofructokinase TERM 339 340523 - 340545 + F 79 -9.8 -3.26405 | opp_overlap 340523 340522 340525, overlap 340522 340525 ATACTAATATAAAAT TAGTGCCGGT TTC ACCGGCGCTC TAGTTTTTAAATAAG TERM 340 340525 - 340543 + F 93 -12.4 -3.19102 | opp_overlap 340525 340523 340522, overlap 340523 340522 ACTAATATAAAATTA GTGCCGGT TTC ACCGGCGC TCTAGTTTTTAAATA TERM 341 340543 - 340525 - f 79 -10.2 -3.26743 | opp_overlap 340523 340522 340525, overlap 340523 340522 ACTAATATAAAATTA GTGCCGGT TTC ACCGGCGC TCTAGTTTTTAAATA glpF 340580 - 341371 + | glycerol uptake facilitator protein tpiA 342147 - 341380 - | triosephosphate isomerase himD 342530 - 342246 - | integration host factor beta-subunit rpsA 344302 - 342626 - | 30S ribosomal protein S1 aroA 346424 - 345141 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 342 345302 - 345281 - G 73 -8.9 -2.58861 | overlap 345280 GATGATCGTTATAAG TTTCAATAC TAGA GTATTGAAA AAAAATAGGTGGAGA serC 347577 - 346492 - | phosphoserine aminotransferase serS 348899 - 347616 - | seryl-tRNA synthetase TERM 343 347753 - 347780 + g 74 -2.8 -5.71712 | overlap 347755 CAGAACCATTTAATG TGTGTACAAAAA AATT TTTTTGTTCAGA TTTTTTTCTATAACG TERM 344 348152 - 348180 + g 88 -10.5 -3.40073 | opp_overlap 348149, overlap 348156 TGATAGGTAAATCTT TTTCGTCTATGAT TTG ATCATAGACTAAA TTAGTTAATGGAACT TERM 345 348156 - 348176 + g 87 -11.3 -2.61216 | opp_overlap 348149, overlap 348152 AGGTAAATCTTTTTC GTCTATGAT TTG ATCATAGAC TAAATTAGTTAATGG TERM 346 348701 - 348711 + g 74 -2.6 -5.67711 | TTAACAATTCATTTT TATT CTT AATA TTTTTGTTTTCTTTA TERM 347 348794 - 348811 + g 75 -7.1 -4.15543 | GTAAAGTTTTTCTTT TTTCTTC CATA GAAGAAA TTTTAGAAATATTTA TERM 348 348926 - 348936 + H 72 -4 -5.41143 | GCTCTTTTTGATTAT CAAT GAA ATTG TTTTTTTAAAAAATG trxB 349248 - 350207 + | thioredoxin reductase TERM 349 350264 - 350244 - f 93 -11.3 -3.70417 | opp_overlap 350235 350244 350246 ATTATATCATTTAAA TACTAGTCA AAA TGACTAGTA TCTGATATAATTAAT TERM 350 350244 - 350264 + F 88 -11.3 -2.89534 | opp_overlap 350244, overlap 350235 350246 ATTATATCATTTAAA TACTAGTCA AAA TGACTAGTA TCTGATATAATTAAT TERM 351 350246 - 350262 + F 75 -9.5 -2.99433 | opp_overlap 350244, overlap 350244 350235 TATATCATTTAAATA CTAGTCA AAA TGACTAG TATCTGATATAATTA infA 350314 - 350532 + | translation initiation factor IF-1 TERM 352 350691 - 350654 - f 82 -6.7 -5.10516 | opp_overlap 350659 AAAAACTAAATAAAA TAAATTTTTTCTTATTT TAAA AAATAAAAAAAATTTTA AAGAGAATTTATGCG TERM 353 351764 - 351746 - g 75 -3.3 -5.47218 | TTTGATGCAAAAAAA TTATTTT ATATA AAAATAA AAGAATGCAAACTTG aspS 350702 - 352462 + | aspartyl-tRNA synthetase TERM 354 352468 - 352484 + T 72 -3.1 -5.82172 | opp_overlap 352465 352464, overlap 352465 352470 352477 AAAAAAATAAGCTTT TATTTTT AAT AAAAATG TTTTTTTATATTACT znuB 353261 - 352473 - | high-affinity zinc uptake system membrane protein ZnuB TERM 355 352874 - 352884 + g 76 -4 -5.45652 | opp_overlap 352874 TGCTTATTGAAATAG TGAT TAA ATCA TTTTTTGTTACAGAT znuC 354035 - 353319 - | high-affinity zinc uptake system ATP-binding protein ZnuC TERM 356 354035 - 354049 + r 73 -2.2 -5.87688 | TTACGAATTCAAACA TAGTTT TAT AAATTA TTTTTTTTAAATTCT TERM 357 354696 - 354720 + r 76 -4.5 -5.35459 | opp_overlap 354696 354698, overlap 354698 TAATTAATATAAAAA TATAAATAAAA TAG TTTTATTTAAA TTTTTTATCATATAT TERM 358 354720 - 354696 - R 73 -4.5 -5.1485 | opp_overlap 354696 354698, overlap 354698 TAATTAATATAAAAA TATAAATAAAA TAG TTTTATTTAAA TTTTTTATCATATAT TERM 359 354718 - 354698 - R 74 -7.1 -4.18115 | opp_overlap 354696 354698, overlap 354696 ATTAATATAAAAATA TAAATAAAA TAG TTTTATTTA AATTTTTTATCATAT pykA 356795 - 355353 - | pyruvate kinase TERM 360 355554 - 355566 + g 74 -4.9 -5.14563 | AAGACTTGCTAAATT TAAAG TTT CTTTA TTTTTTGATAAAGCA zwf 357079 - 358554 + | glucose-6-phosphate 1-dehydrogenase htpX 358739 - 359617 + | heat shock protein HtpX TERM 361 359675 - 359624 - f 70 -7 -3.98661 | opp_overlap 359640 TATATGTAGTATAAA TCTATCTCTCTTAATAGAAGTATA GAAA TATATTTCTATTAAGAAAATTAAA AAATTGAAACATATA cspC 359966 - 360175 + | cold shock-like protein CspC TERM 362 361591 - 361580 - g 85 -3 -6.11644 | opp_overlap 361580 CTATTGAAAAAAAAA TAGA CGTA TCTA CTTTTTCTAGTAAAA yoaE 360478 - 362043 + | predicted inner membrane protein (YoaE) TERM 363 362461 - 362442 - g 72 -3.7 -5.20756 | GCAAAAAAAAAACAA GTATATT GGGCAA AATATAC AAGAAATAAAAACTC yeaZ 362073 - 362738 + | hypothetical protein TERM 364 362808 - 362768 - T 100 -12.2 -5.60689 | opp_overlap 362775 362777 TTATATAATAAAAAA CAATCAATGCTGAAATAT TAAAT ATACTTCAGTATTGATTG AACTAAATTTACAGT minE 363135 - 362884 - | cell division topological specificity factor MinE minD 363951 - 363139 - | septum site-determining protein MinD TERM 365 363654 - 363680 + g 80 -8.8 -3.96624 | overlap 363655 CTTTTTCAACTCCTA TTCGTGTTAAAG CGT CTTTATCACGAG TTTGTGATGCAGGTA TERM 366 363655 - 363679 + g 81 -10.1 -2.97653 | overlap 363654 TTTTTCAACTCCTAT TCGTGTTAAAG CGT CTTTATCACGA GTTTGTGATGCAGGT TERM 367 363703 - 363713 + g 91 -4 -5.9362 | opp_overlap 363703 TGCAGGTAGTATAAA CAAA TTA TTTG TTTTTTTATCTTTTA minC 364691 - 363978 - | cell division inhibitor MinC TERM 368 365113 - 365091 - H 100 -10.8 -6.3578 | opp_overlap 365097 365105, overlap 365100 365103 365105 ATTTTAAAAAAAAAA TATGAACAAT AAT ATTGTTCATA ACAATTTATTAATTT yjjT 365092 - 365934 + | 16S rRNA m(2)G 1207 methyltransferase TERM 369 366175 - 366188 + T 71 -2.5 -5.71712 | opp_overlap 366175 366186 CAAACAAAAAATGAA TTATT TTAA AATAA TTTTTTTGTATAAAA TERM 370 366339 - 366323 - T 70 -8.7 -2.52676 | overlap 366336 366337 GAGCGGTTTAAGGCA GCGGTCT TGA AAACCGC CGACGAGAAATCGTC ompA 367535 - 366486 - | outer membrane protein A precursor TERM 371 367633 - 367608 - R 77 -7.9 -4.32579 | opp_overlap 367604 367601 367611 367613 367622, overlap 367622 ATATTCTATAATAAA TATTATATAAT AAAT ATTATATAATA AATATTATATAATAA TERM 372 367647 - 367622 - R 80 -7.9 -4.41716 | opp_overlap 367604 367601 367613 367611 367622, overlap 367608 367638 ATATTATATAATAAA TATTATATAAT AAAT ATTATATAATA AATAATATATATAAT mviN 369226 - 367691 - | virulence factor MviN-like protein TERM 373 367913 - 367926 + g 74 -3.9 -5.33405 | GATGAATTCACTACG TTGTA AAGA TACAA TTTTTCTTTGATACA TERM 374 369180 - 369151 - G 72 -5.9 -4.45544 | overlap 369167 TGCTAGCAATTAAAA TATCTCGAACA AAACCTAA TATTCGAGATA TTAAAGTCATCAAAC pyrC 369500 - 370552 + | dihydroorotase flgN 370979 - 370572 - | flagella synthesis protein FlgN flgA 371732 - 371052 - | flagella basal-body P-ring formation protein FlgA precursor TERM 375 371390 - 371401 + g 73 -4.4 -5.10767 | ATTCTTTTATTCTTG TTCC TCGG GGAA TTTTTCTATTCGCTA TERM 376 372200 - 372182 - H 76 -6.2 -4.98522 | opp_overlap 372193, overlap 372193 AACTCTATATAAAAA TAAAAAAA CTA TTTTTTTA AAAAAAACTTCTCCT flgC 372425 - 372835 + | flagellar basal-body rod protein FlgC TERM 377 372948 - 372933 - g 78 -2.6 -5.75945 | AGCTGTCAAAAAAAA TGATAA TAAT TTACCA AATGACATTAACCCA flgD 372847 - 373557 + | basal-body rod modification protein FlgD TERM 378 373865 - 373850 - g 74 -6.1 -4.56607 | opp_overlap 373850, overlap 373845 TTAGGAATTATAAAA GACGG CTTTTT CCGTC TTGTAGACAGTCAAG flgE 373598 - 374824 + | flagellar hook protein FlgE TERM 379 375406 - 375396 - g 78 -2.6 -5.78622 | TTATCTGAAAAAAAA TAAT GAA ATTA ACAAAAAACATACTA flgF 374851 - 375609 + | flagellar basal-body rod protein FlgF flgG 375627 - 376409 + | flagellar basal-body rod protein FlgG flgH 376493 - 377209 + | flagellar L-ring protein precursor TERM 380 377255 - 377243 - f 71 -4.9 -5.01732 | opp_overlap 377233 377241 377243 AATCGTTTTAAAAAA CTATT TAA AATAG TATTTCTTATAAATT TERM 381 377310 - 377280 - f 75 -7.8 -3.79481 | TAAATTTAATTCAAA CTCATAAAGAAC GTTATTT ATTCTTTATGAG AAAAATTAAATATAT flgI 377390 - 378547 + | flagellar P-ring protein precursor flgJ 378547 - 378846 + | flagellar protein FlgJ TERM 382 379328 - 379312 - g 84 -3.8 -5.81412 | TTTAGCTAAAAAAAA TGTTTT TAATG AAAACA TACAGAAGAAATTAA TERM 383 379554 - 379540 - g 73 -8.6 -3.02459 | opp_overlap 379539 TATCGAACAACGAGA TCGTCT GGT AGACGA ATTAAATGGTTTAAT flgK 378947 - 380578 + | flagellar hook-associated protein 1 TERM 384 380606 - 380634 + T 100 -13.5 -5.38047 | opp_overlap 380606 380612, overlap 380612 CATACTTATAAAAAA TAAAAACTTACTT TTA AAGTAAGTTTTTA TTTTTTGTCTAAGTA TERM 385 380634 - 380606 - T 100 -13.5 -5.29782 | opp_overlap 380606 380612, overlap 380612 CATACTTATAAAAAA TAAAAACTTACTT TTA AAGTAAGTTTTTA TTTTTTGTCTAAGTA TERM 386 380612 - 380628 + T 100 -8.1 -5.8096 | opp_overlap 380606 380612, overlap 380606 TATAAAAAATAAAAA CTTACTT TTA AAGTAAG TTTTTATTTTTTGTC TERM 387 380628 - 380612 - T 100 -8.1 -5.8096 | opp_overlap 380612 380606, overlap 380606 TATAAAAAATAAAAA CTTACTT TTA AAGTAAG TTTTTATTTTTTGTC rne 383451 - 380743 - | ribonuclease E TERM 388 380938 - 380956 + g 85 -3.2 -6.02914 | opp_overlap 380938, overlap 380940 ATTTTTTCTATTACA TGTTCTTT TAT AAAGAAAA TTTTTTTTATCTAAA TERM 389 381623 - 381643 + g 72 -7.1 -3.93177 | opp_overlap 381620 381617 TTGTTTAAAGAACTA TATTTTTTT TTA AAAAAAATA TTATTCGTATTTTTT TERM 390 383745 - 383705 - H 72 -3.8 -5.5353 | gap 1, opp_overlap 383716 383722 TATATTAACAAAAAA TTTATT-TAATATATTTAT ATAA ATAATTATATTATAATAAA TAAAAATTAAAAAAA rluC 383786 - 384730 + | ribosomal large subunit pseudouridine synthase C TERM 391 384728 - 384742 + F 86 -5.8 -5.78622 | opp_overlap 384720 384728 384726, overlap 384720 TTAAATACTATAATA TAGTTT ATT AAACTA TTTTTTTTAACATAC rpmF 384776 - 384940 + | 50S ribosomal protein L32 TERM 392 384982 - 384962 - f 84 -8.4 -4.47456 | opp_overlap 384962, overlap 384981 ATATTTAATAAGAAA TGGTACTT GAAAA AAGTACCA TTTATAAAATATATA TERM 393 384962 - 384982 + F 78 -8.4 -3.91858 | opp_overlap 384962 384981 ATATTTAATAAGAAA TGGTACTT GAAAA AAGTACCA TTTATAAAATATATA TERM 394 385143 - 385099 - f 72 -6.2 -4.57569 | opp_overlap 385093 385109 TTATTTTTTTAAAAA TTTATTTTTATATATTTTTT AATAA AAAAAATATATTTAAATAAA ATTAAAAAGTAAAAT TERM 395 386950 - 386964 + G 79 -5 -5.53288 | opp_overlap 386950 GACAAAAAGAAGAAG TAGCAG ATG CTGTTA TTTTTTTAGCTTCAA fabG 386307 - 387041 + | 3-oxoacyl-[acyl-carrier protein] reductase TERM 396 387165 - 387149 - g 85 -3.1 -5.97575 | AACGTATAAAAAAAA TAATTTT TGA AAAACTA GATATAAAACAAGAA acpP 387118 - 387360 + | acyl carrier protein tmk 387431 - 388069 + | thymidylate kinase holB 388066 - 389046 + | DNA polymerase III delta' subunit TERM 397 389056 - 389030 - f 91 -9.8 -5.07567 | opp_overlap 389030 389037, overlap 389037 TTATATGGGAAAAAA TATTAAATTTTT CAT AAAAATTTAATA TTTATAAAAAAAGAG TERM 398 389030 - 389056 + F 83 -9.8 -3.85698 | opp_overlap 389030 389037, overlap 389037 TTATATGGGAAAAAA TATTAAATTTTT CAT AAAAATTTAATA TTTATAAAAAAAGAG ycfH 389080 - 389874 + | predicted metallodependent hydrolase (YcfH) ptsG 389970 - 391403 + | PTS system glucose-specific IIBC component hinT 391423 - 391767 + | purine nucleoside phosphoramidase (YcfF) TERM 399 391770 - 391796 + F 76 -5.4 -5.21683 | opp_overlap 391786, overlap 391768 391769 ATCTTTCTCCTAATT TTTTTATAGAAA AAA TTTTTATGAAAA TTTCTTTTTTTACAT TERM 400 391949 - 391926 - g 93 -5.5 -5.86332 | opp_overlap 391926 391925 CGAAGGTAAAAAAAA CAAATTTTA TTCTTT TAAAATTTG ATTCTGCTATAGAAA TERM 401 392204 - 392190 - g 87 -2.8 -6.28967 | overlap 392192 TAGAAATAAAAAAAA CACTAG ATA CCAGTA CTGCAATTTTTTTCT ycfM 391844 - 392353 + | predicted outer membrane lipoprotein (YcfM) ompF 393750 - 392602 - | OmpF-like porin asnS 395290 - 393890 - | asparaginyl-tRNA synthetase TERM 402 394150 - 394164 + g 74 -2.8 -5.73339 | TAGGCACTAATATAT CTATTG CTG CAACAG TTTTTTTATCGTTAT TERM 403 394670 - 394647 - G 71 -7.6 -3.55071 | GCATATGTTTCTAAA TTTAACTGTC CCGA AACAGTTAAA AAAGATTCTTTTCCA TERM 404 394693 - 394674 - G 73 -4.4 -5.18561 | opp_overlap 394674 GAAACAGTTAAAAAA GATTCTTT TCCA AAAAAATC TTTTTTAAAATCAAC pncB 396637 - 395438 - | nicotinate phosphoribosyltransferase TERM 405 395658 - 395673 + g 75 -3.4 -5.45726 | TTTTTATGAAATTTT TTATAT AAAG ATATAA TTTTTTTAAAATCTA TERM 406 396816 - 396799 - H 74 -5.7 -5.09685 | overlap 396815 TTCAAAAAAAAATAA TATCTTT AAAA AAAGATA GCACGTAAAATAAAA pyrD 397059 - 397922 + | dihydroorotate dehydrogenase TERM 407 398937 - 398925 - g 100 -6.3 -5.91981 | AAAAGCTAAAAAAAA TGCAT CAA ATGCA GGCGTTTTAAAAATA TERM 408 399312 - 399297 - g 72 -3.4 -5.35815 | TAGATTAAACAAAAA TTTTAA AAAA TTAAAA AAATGGATTAATTCG TERM 409 399606 - 399571 - g 76 -4.3 -5.35459 | opp_overlap 399571, overlap 399574 ACACAGTATAAAAAA TTATTTAATAGTAAT GATTTT ATCACTATTAAAGAA TATCATGCAAAATTT TERM 410 400116 - 400103 - g 71 -2.4 -5.52986 | opp_overlap 400089, overlap 400084 ATTGCATTAAAAAAA TGCA ATTACA TGCA AAAAAAATTACTAAC ycbY 398098 - 400203 + | 23S rRNA m2G2445 methyltransferase (YcbY) uup 400223 - 402013 + | ABC transporter ATP-binding protein Uup TERM 411 402002 - 401992 - T 72 -2.6 -5.77632 | overlap 401997 AAAATTAGAAAAAAA TATT ATA AATA CTAAAATATAGAATT yceA 402991 - 402017 - | hypothetical protein TERM 412 402281 - 402271 - G 71 -4.6 -4.86731 | opp_overlap 402271, overlap 402266 TCCCTTTAAACAAAA CGGG TAA CCCA TTTTTTCGAGCATCG valS 405915 - 403048 - | valyl-tRNA synthetase TERM 413 405837 - 405853 + g 75 -3.7 -5.40072 | opp_overlap 405836, overlap 405828 405839 ATTTTTCTAAATGAT TAGGTTT AAA AAACCCA TTTTTTTCCCAAAAA pepA 407491 - 405992 - | aminopeptidase A/I TERM 414 406061 - 406040 - G 72 -7.3 -3.91364 | opp_overlap 406039 AAATTGACATAATAA TTCAACAGG ACGT CCTGTTGCA CCTGATTTTTTTCCT TERM 415 407448 - 407472 + g 71 -4.4 -4.83169 | opp_overlap 407448 ACTACTATACAATCA GTTTTTTCTT TATCT AAGAAACAAC TTTTTATAAAAAAAT TERM 416 408224 - 408210 - g 71 -4.4 -4.99043 | opp_overlap 408210 TTTCCAGAAAGAAAA TTTTAT GAA ATAAAA TGTGCTTATGTTGGA argF 407751 - 408767 + | ornithine carbamoyltransferase chain F pyrB 408886 - 409818 + | aspartate carbamoyltransferase catalytic chain pyrI 409826 - 410290 + | aspartate carbamoyltransferase regulatory chain TERM 417 410598 - 410586 - g 84 -3.5 -5.81412 | CTGATTTAAAAAAAA TTAAT ATT ATTAA TGAAATTTATAAAAA tdcF 410336 - 410722 + | predicted L-PSP (mRNA) endoribonuclease (YhaR) TERM 418 410805 - 410769 - T 74 -5.9 -4.84182 | overlap 410771 410773 410774 TTAAAAAAGAATAAA TACACTTAGTATGCCGC AAA GCGGCATAAAAAATACA AAATTAAACATTTCT deaD 412614 - 410809 - | ATP-dependent RNA helicase DeaD pnp 415118 - 412995 - | polyribonucleotide nucleotidyltransferase TERM 419 415256 - 415242 - R 90 -7.1 -5.51165 | opp_overlap 415242 AAAATCGTAAAAAAA GGGCT AATAA AGCCC TTTGAAAAATTTATT rpsO 415589 - 415320 - | 30S ribosomal protein S15 truB 416632 - 415694 - | tRNA pseudouridine 55 synthase rbfA 417032 - 416670 - | ribosome-binding factor A TERM 420 416960 - 416975 + g 73 -5.4 -4.69028 | GATCTTTAAGTGAAT GCTGTA TAAT TGCAGC TATTTTTTTTTGCAA infB 419672 - 417078 - | translation initiation factor IF-2 TERM 421 417544 - 417524 - G 72 -6.9 -4.2354 | opp_overlap 417540, overlap 417521 TAAATCCTAAAATAA TAGCATTAG ACG CTAGTGCTA AAGAAGCATCTGTTT TERM 422 417579 - 417589 + g 74 -2.6 -5.67529 | AATACCTCCAATTCC TAAT CCT ATTA TTTTTATTTTTACTT TERM 423 418009 - 418019 + g 70 -6.8 -4.03234 | AATACTGTAGCTATT GGAC CTC GTCC TTTATCTAAAAAAGA TERM 424 418177 - 418194 + g 71 -7.1 -3.86252 | ATATTCTCACCACCC CATTCTT CTGA AAGAATG TTATATTTCATCAAG nusA 421180 - 419690 - | transcription elongation factor NusA TERM 425 421400 - 421385 - R 100 -10.4 -5.46657 | opp_overlap 421385 421398 CATTGTAATAAAAAA CCCCGA AAAG TCGGGG TTTTAGGTGCTATTA TERM 426 421385 - 421400 + r 87 -10.4 -4.23723 | opp_overlap 421385, overlap 421398 CATTGTAATAAAAAA CCCCGA AAAG TCGGGG TTTTAGGTGCTATTA secG 421982 - 421653 - | protein-export membrane protein SecG TERM 427 421850 - 421866 + g 70 -5.3 -4.51891 | opp_overlap 421852, overlap 421847 TATTAGTTCCTATAC TATTAAA AAA TTTAATA TTATTTTTCGTATGT TERM 428 422049 - 422065 + r 71 -2.4 -5.8096 | overlap 422049 422049 422057 TTTACTTAAATATGC TTTTTT ATTAA AAAAAA TTTTTATTTTTTATA mrsA 423579 - 422245 - | MrsA protein TERM 429 422712 - 422681 - G 78 -6 -4.82901 | TGTGCGGGACAAAAA GGAATTCCAAGTTT TTTT AAACCTAGAATTAC ACCCATATTAGTCAT TERM 430 423647 - 423683 + r 83 -9 -4.15453 | opp_overlap 423631 423647, overlap 423650 TATTTTTTTAGAAAA TAAGATGAAGTTATAG TAATT TTATCACTTCATCTTA TTTTAAGATACATTA TERM 431 423683 - 423647 - R 80 -8.3 -4.3739 | opp_overlap 423647 423650, overlap 423631 TATTTTTTTAGAAAA TAAGATGAAGTTATA GTAATTT TATCACTTCATCTTA TTTTAAGATACATTA hflB 425634 - 423799 - | cell division protein FtsH TERM 432 424710 - 424700 - G 74 -6.8 -4.30844 | ACTTGACGATCAAAA CGAC CAG GTCG TAAGAGTGCAGGATC TERM 433 425541 - 425528 - G 80 -5.3 -5.24531 | opp_overlap 425528 ACTTCTGATAAAAAA GTTGA ATAG TCAAC TTTATGGTTATTTAC greA 426872 - 426393 - | transcription elongation factor GreA TERM 434 426718 - 426734 + g 78 -9.5 -2.9785 | overlap 426711 426717 426721 CTCTGTTCTTCACGA GCTGAAT GAT ATTCAGC ATTCTCTTTTAAATC TERM 435 427147 - 427134 - H 77 -2.5 -6.18768 | opp_overlap 427134 427139, overlap 427139 AAAATATAAAAAAAA TTAAA TTTA TTTAA TAAATTACTTAAAAC yrbA 427396 - 427638 + | hypothetical protein TERM 436 427821 - 427835 + G 70 -8.6 -2.72461 | opp_overlap 427821 427831, overlap 427820 AAGGAAAAATAAAAA TCGGAA ATA TTCCGA ATTTAACGGACATTA TERM 437 427835 - 427821 - g 100 -8.6 -5.67529 | opp_overlap 427820 427821, overlap 427831 AAGGAAAAATAAAAA TCGGAA ATA TTCCGA ATTTAACGGACATTA murA 427700 - 428950 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase rplU 429089 - 429415 + | 50S ribosomal protein L21 rpmA 429420 - 429674 + | 50S ribosomal protein L27 TERM 438 429711 - 429697 - f 89 -10 -4.63044 | opp_overlap 429693 429697 ATTTATATAAACAAA CCCCTT TTC AAGGGG TTCTATCTTTTTTAT TERM 439 429697 - 429711 + F 85 -10 -3.95724 | opp_overlap 429697, overlap 429693 ATTTATATAAACAAA CCCCTT TTC AAGGGG TTCTATCTTTTTTAT TERM 440 430453 - 430443 - g 71 -2.6 -5.54264 | AAATATTCAAAAAAA TAAA AAA TTTA TCATAGCAGATATTC TERM 441 430500 - 430514 + G 74 -5 -5.03747 | GGCATCTTATGGTGC CGGATT AGG AATTCG TTTTTTAAAGCATTT yhbZ 429826 - 430830 + | hypothetical 43.3 kDa GTP-binding protein TERM 442 430863 - 430835 - T 88 -6.1 -6.04324 | opp_overlap 430835 TGAAAAAATAAAAAA GAACTCGGTTC ATTAAGA AAACCAAGTTC TTTTTAATCAAAACT rpsI 431290 - 430898 - | 30S ribosomal protein S9 rplM 431739 - 431311 - | 50S ribosomal protein L13 TERM 443 432671 - 432657 - g 86 -7.2 -5.15634 | opp_overlap 432656 GATTTTATTAAAAAA TTTCCA AAA TGGAAA ATTAAATATACTAAG pheA 431991 - 433148 + | chorismate mutase TERM 444 433949 - 433931 - g 82 -4.6 -5.65177 | overlap 433934 ATATTGATAAAAAAA TGATGAAT GAA ATTCAGCA AATACAAGTTATATC ffh 433330 - 434685 + | signal recognition particle protein rpsP 434794 - 435033 + | 30S ribosomal protein S16 rimM 435035 - 435565 + | 16S rRNA processing protein RimM TERM 445 435606 - 435592 - g 86 -2.2 -6.28631 | TAAATGAAAAAAAAA TATAAT GAA ACTATA ATATGCTTTAATATT TERM 446 436219 - 436229 + G 74 -8.2 -3.54543 | opp_overlap 436218 AACCACAATGAAATT CGCC TTT GGCG TTTAAAACAGTCACT trmD 435580 - 436293 + | tRNA (guanine-N1)-methyltransferase rplS 436392 - 436739 + | 50S ribosomal protein L19 TERM 447 436746 - 436778 + T 72 -4.3 -5.35459 | gap 1, opp_overlap 436748, overlap 436748 TTAAATTGATTTTAA TA-TGCAGTCATGA CATAAT TCTTGACTGCATTA TTTTTTATGGTATAT TERM 448 436775 - 436748 - T 72 -8.5 -3.07236 | opp_overlap 436746 436748 AAATTGATTTTAATA TGCAGTCATGA CATAAT TCTTGACTGCA TTATTTTTTATGGTA TERM 449 436748 - 436775 + T 89 -8.5 -4.74611 | opp_overlap 436748, overlap 436746 AAATTGATTTTAATA TGCAGTCATGA CATAAT TCTTGACTGCA TTATTTTTTATGGTA tldD 438274 - 436823 - | TldD protein TERM 450 436874 - 436889 + g 70 -6.2 -4.16146 | CATAGATGGTTGACC TATTCC AACT GGAATA TTTTGACCGTCTTTT TERM 451 438353 - 438337 - H 81 -3.8 -6.14618 | opp_overlap 438348 438348 438349, overlap 438348 GATAAAACAAAAAAA GAAAAA AATAA TTTTTC TAAAAAAATGTTATA aroD 438432 - 438884 + | 3-dehydroquinate dehydratase TERM 452 438981 - 438949 - T 80 -10.3 -2.54687 | opp_overlap 438931 438949 438951 438966, overlap 438931 438948 438967 TTAATTAGTATTAAT TCTTTTTAAAAAATA TAT TATTTTTTAAAAAAA TAGTTAAATTTTTTT fis 439372 - 439076 - | factor-for-inversion stimulation protein rluD 440479 - 439541 - | ribosomal large subunit pseudouridine synthase D TERM 453 439581 - 439601 + g 78 -2.5 -5.86061 | overlap 439582 ATATCTTGAGGAAGT GGTACTGTC CAT GACATTACA TTTTTTTTAATAGGA yfiO 440644 - 441384 + | hypothetical 27.8 kDa lipoprotein TERM 454 441386 - 441362 - f 76 -6.7 -4.54753 | opp_overlap 441362, overlap 441359 AAATATCAAAAATAA TTTTATTAAAT AAA ATTCAATAAAA AAAACTTGATTATTA TERM 455 441921 - 441907 - g 74 -2.8 -5.63374 | overlap 441919 TTAACATCAAAAAAA TGGTTT AAC ATACCA CAAAATAAATTATGG TERM 456 442247 - 442229 - g 71 -4 -5.0916 | TCTCCAAGACAAAAA TTATTTCT TTA AAAAATAA ATCCATAGATACAGG TERM 457 442883 - 442873 - g 71 -2.6 -5.54885 | opp_overlap 442873, overlap 442875 AATATCAATAAAAAA TTTT ATA AAAA TTATAACAACAATAT TERM 458 443914 - 443902 - g 74 -4.9 -5.15167 | opp_overlap 443902 GATTATGAACAAAAA TCATT AAG AATGA TAGTTGATCAATTGA TERM 459 443996 - 443972 - g 71 -8.7 -2.94561 | opp_overlap 443976 443979, overlap 443967 443976 443979 TCTTAATAAATATTA TCAATAATCGT TTT ACGATTATTGT AGGTGTAACAAGAAA TERM 460 443976 - 443992 + G 73 -8.1 -3.39327 | opp_overlap 443967 443972 443976 443979, overlap 443979 AATAAATATTATCAA TAATCGT TTT ACGATTA TTGTAGGTGTAACAA TERM 461 443992 - 443976 - g 71 -8.1 -3.32294 | opp_overlap 443976 443979, overlap 443967 443972 443979 AATAAATATTATCAA TAATCGT TTT ACGATTA TTGTAGGTGTAACAA alaS 441550 - 444186 + | alanyl-tRNA synthetase csrA 444381 - 444554 + | carbon storage regulator TERM 462 444865 - 444849 - f 70 -8.7 -2.69468 | overlap 444861 CAGTTGGATAGAGTA CTCGGCT ACG AACCGAG CGGTCGGAGGTTCGA TERM 463 445433 - 445422 - g 80 -5.8 -5.04987 | opp_overlap 445422 AATAGGTTTAAAAAA TCGC TACG GCGA TTTGATAAATACTAT TERM 464 446428 - 446404 - g 70 -5.1 -4.69435 | GGAATAAAAAAAACA GGTCTCTATTT GGC AAATAAATACC ACGAAAAATTTATTA gshA 445012 - 446568 + | glutamate-cysteine ligase metK 447851 - 446715 - | S-adenosylmethionine synthetase TERM 465 446741 - 446759 + g 70 -6 -4.3739 | opp_overlap 446743, overlap 446744 CATTTACCTTGTCAA GATTTTCC CAT GGAAATTC TTTTCTACCAAAATG TERM 466 446744 - 446756 + g 72 -6.3 -4.30995 | opp_overlap 446743, overlap 446741 TTACCTTGTCAAGAT TTTCC CAT GGAAA TTCTTTTCTACCAAA endA 448086 - 448838 + | endonuclease I TERM 467 449197 - 449164 - gT 70 -8.5 -2.69603 | overlap 449161 AAAACCATTACACCA TTGTTTTTTGAAAAT GATC ATTTTCAAAAAAAAA GAATAAATTTTTCTA rsmE 448810 - 449571 + | 16S rRNA m3U1498 methyltransferase (YggJ) rpiA 450316 - 449645 - | ribose-5-phosphate isomerase A TERM 468 449854 - 449868 + g 71 -4.2 -5.06735 | CATTTTTACGATATT TTGGCG TTC CACCAA TTTTTATCATTTCTC TERM 469 449928 - 449950 + g 84 -3.4 -5.75822 | opp_overlap 449933, overlap 449931 449933 ATTTCAATTGGTAGA GGAAATGTTC CAA GAACATCTAC TTTTTTTGATTTGTC TERM 470 450276 - 450289 + g 100 -3.7 -6.50278 | TCAATATAATCTAGT GCCGC CCAA GCTGC TTTTTTTTTTAGTTT TERM 471 450886 - 450871 - H 78 -3.4 -5.9218 | opp_overlap 450871 450876, overlap 450876 TACATAAGAAAAAAA TATATT TTAT AATATA TAAATTGAATAATCA TERM 472 451446 - 451435 - g 90 -5.8 -5.59502 | opp_overlap 451438 451439, overlap 451436 451438 451440 GAAAAAATGAAAAAA GGAG ACTT CTCC GAAGGAGAAGCATGT TERM 473 451456 - 451440 - g 90 -10.9 -3.27687 | opp_overlap 451439 451438, overlap 451435 451438 451436 AATGAAAAAAGGAGA CTTCTCC GAA GGAGAAG CATGTTTGCGCGCAA glnS 450943 - 452658 + | glutaminyl-tRNA synthetase TERM 474 453708 - 453686 - g 74 -2 -5.64274 | opp_overlap 453692, overlap 453688 TTATGCAGAAAAAAA CTTTAACAAT ACT ATTGTTATTG GAATTATTGGAAAAT TERM 475 453858 - 453842 - g 73 -3.1 -5.54907 | GGTAGAAAATAAAAA TTTTCAA ATC TTAAAAA ATCTTAATGGCATCT pyrG 452832 - 454469 + | CTP synthetase eno 454499 - 455803 + | enolase nlpD 456963 - 455959 - | lipoprotein NlpD precursor TERM 476 456401 - 456422 + g 70 -3.1 -5.18995 | overlap 456390 456388 TTTATTTTTTTTATG CAAAAAAAA CATA TTTTTTTAG TTTTTATATTATCTT TERM 477 456753 - 456772 + g 86 -2.3 -6.18768 | opp_overlap 456753, overlap 456753 456753 456761 456763 TATTGCCAATAATAA TTTTTTT ATTTAA AAAAAAA TTTTTTTTATATTTT TERM 478 456932 - 456922 - G 78 -2.6 -5.81622 | opp_overlap 456922 AGAAAACGAAAAAAA TATT AAA AATA ATAATTTAAATAAAA TERM 479 457007 - 456997 - R 74 -5.4 -4.91852 | opp_overlap 456997 TTCATTAAAAATAAA TGTC TTA GACA ATATTTTTTTATATA ispF 457538 - 457053 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer (YgbB) ygbP 458267 - 457554 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 480 458296 - 458315 + r 88 -5.2 -5.95449 | opp_overlap 458296 ATAAGACTAAAAAAA TTTTTTTA AATT TAAAAAAA TTTTTTCTTTTATTT TERM 481 458315 - 458296 - R 81 -5.2 -5.6473 | opp_overlap 458296 ATAAGACTAAAAAAA TTTTTTTA AATT TAAAAAAA TTTTTTCTTTTATTT ftsB 458565 - 458350 - | essential cell division protein FtsB (YgbQ) cysC 459243 - 458623 - | adenylylsulfate kinase cysN 460665 - 459244 - | sulfate adenylate transferase subunit 1 TERM 482 459323 - 459333 + g 76 -4 -5.47159 | overlap 459327 AAATCATAAAAATCT GATT CAA AATC TTTTTGTTTATTAGA cysD 461592 - 460684 - | sulfate adenylyltransferase subunit 2 cysG 463023 - 461602 - | ferrochelatase cysH 464096 - 463362 - | phosphoadenosine phosphosulfate reductase TERM 483 463877 - 463889 + g 93 -3.3 -6.25242 | opp_overlap 463877 TATCAATTAATATAA CAGGA ATA TCCGG TTTTTTTTTGATTAT cysI 465821 - 464112 - | sulfite reductase (NADPH) hemoprotein beta-component TERM 484 465202 - 465212 + g 70 -5.4 -4.59846 | GGTAAATATGTTTTT CCTA ATA TAGG TTCTTTTTCTGTCGT TERM 485 465351 - 465363 + g 72 -6.3 -4.35044 | TTCCATAGGATTTGA TGTAC AAA GTACA TTTCTATTTACATCA cysJ 467626 - 465821 - | sulfite reductase (NADPH) flavoprotein alpha-component mutS 470225 - 467817 - | DNA mismatch repair protein TERM 486 467981 - 468002 + g 70 -3.1 -5.25772 | opp_overlap 467971 467981, overlap 467969 467968 TAATAGCAGAAAAAT GAAAATTTT TTAC AAATTTTTC TTTTTCTTCTAATTT TERM 487 468827 - 468845 + g 100 -3.2 -6.82322 | opp_overlap 468820 468831, overlap 468820 468831 TATTAAATTTTATCT TAAATGAT TCA ATCATTAA TTTTTTTTTTTCTTT TERM 488 470201 - 470211 + g 95 -2.6 -6.63964 | overlap 470183 TATGATTGTTCATAC TATT CTT AATA TTTTTTTTTTTCATA dsbA 470382 - 471020 + | thiol:disulfide interchange protein DsbA precursor TERM 489 471393 - 471383 - g 95 -4 -6.12328 | AGAATATAAAAAAAA TAGA TCA TCTA TGCCTGATTTATTGG TERM 490 471621 - 471611 - g 82 -2.6 -5.94713 | opp_overlap 471611, overlap 471614 ATTCCATAAAAAAAA TAAT TGC ATTA TTACATCAGAAATAA TERM 491 471641 - 471614 - g 74 -5 -5.03409 | opp_overlap 471611, overlap 471611 CCATAAAAAAAATAA TTGCATTATTAC ATCA GAAATAATACAA GAAAAATATGGTATA TERM 492 471835 - 471810 - g 71 -2.7 -5.43553 | overlap 471805 471812 ATTGAAAAAATAAAA TCTTTACCATT AAGA AATGCTAAAAA TATTTCTATTCAACT polA 471141 - 472001 + | DNA polymerase I yihA 472681 - 472064 - | hypothetical GTP-binding protein TERM 493 473355 - 473370 + G 86 -6.2 -5.24551 | opp_overlap 473357 CCTGATTGGGTAGTA GATCAA GTTT TTGATC TTTTTGTTAATTTGA typA 472932 - 474755 + | GTP-binding protein BipA TERM 494 474840 - 474812 - T 74 -9.2 -2.71144 | opp_overlap 474806 474817, overlap 474814 474817 TATCTTTTTCAATTA TATAATTCTATT TATTC AATAGAATTATA TAAAAGTGTTCCTAA gmk 475501 - 474878 - | guanylate kinase ygfZ 476560 - 475601 - | folate-binding protein (YgfZ) TERM 495 475885 - 475907 + g 76 -8.6 -3.56216 | CATAATAACATCCTT TTTTAAAGCT AAT AGCTTTAAGA TTATGTAAATTAATT prfB 476779 - 477828 + | peptide chain release factor 2 TERM 496 478483 - 478502 + G 88 -7.8 -4.81852 | CTACAAAATATTCCT GGAGGAGC TAAT GCTCGTCC TTTTATTACTTATCA TERM 497 479178 - 479152 - g 74 -6.8 -4.26398 | overlap 479150 479153 GAAGATCAAAAAACA CGATTTTTAAAT CAA ATTCAAAAATCA AATAAGGAAGATAAT TERM 498 479177 - 479153 - g 70 -8.1 -3.14212 | overlap 479152 479150 AAGATCAAAAAACAC GATTTTTAAAT CAA ATTCAAAAATC AAATAAGGAAGATAA lysS 477838 - 479358 + | lysyl-tRNA synthetase lysA 479424 - 480671 + | diaminopimelate decarboxylase TERM 499 481108 - 481098 - g 95 -2.6 -6.56554 | opp_overlap 481098, overlap 481103 AATATAAAAAAAAAA TATT AGA AATA TCTGATTTCATCACT TERM 500 481341 - 481357 + G 75 -3.7 -5.43621 | overlap 481343 TATACGAATTTTTTT TAGAAGG GAT TCTTCTG TTTTTTATAATTTAT lgt 480737 - 481582 + | prolipoprotein diacylglyceryl transferase TERM 501 481948 - 481937 - g 77 -3 -5.68438 | overlap 481941 TGATCAAATAAAAAA TGTA TTAA TACA ATTAAAAAAAAATCC thyA 481596 - 482390 + | thymidylate synthase TERM 502 482686 - 482667 - g 86 -2.2 -6.12458 | GAAAAAAATAAAAAA TAATAACC CAAA AGTCATTA TTGCTGTAGGGGGTT TERM 503 482886 - 482868 - g 71 -7.6 -3.59063 | overlap 482866 AGAAAAATTTAAATA TTTTTTAG CAC CTAAAAAA AAAGGATACACAGCA miaB 482458 - 483777 + | isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) TERM 504 483921 - 483909 - f 85 -3.5 -6.38039 | TATGTAAAAAAAAAA TATAA ACA TTATA ACAATCCGTATTGTA TERM 505 483968 - 483958 - g 71 -2.6 -5.37593 | opp_overlap 483958 TGGGAAATTAAAAAA TTAA ATT TTAA TTATAGAAAAAAAAA TERM 506 484006 - 483988 - g 71 -2.4 -5.48106 | opp_overlap 483989 483992, overlap 483989 483992 AGAAAAAAAAATAAA CCAACAAA TAT TTTGTCGT TTCCTTTTAATAAAT ybeY 483931 - 484266 + | hypothetical protein ybeX 484347 - 485222 + | hypothetical protein TERM 507 485398 - 485388 - g 84 -4 -5.75342 | overlap 485395 GTTTTGGAAAAAAAA CAAA ACT TTTG AAGTCAAAGAAGATC TERM 508 485693 - 485656 - g 91 -7.9 -5.28755 | AAATACATGAAAAAA CAACTCCAATCATTA GGTTTTAG TTATGATTGGAGTCG AGAAATAACTACATG TERM 509 487689 - 487705 + G 74 -6.7 -4.37092 | opp_overlap 487678 487702 CAACGAAAAATGGCC TATCTTT CAA AAAGATA TTTTATCAAAAAAAT leuS 485326 - 487905 + | leucyl-tRNA synthetase TERM 510 487982 - 488000 + G 100 -9 -5.44837 | opp_overlap 487981 AACTAAAAAAAAGTT TAATGCAA AAA TTGCATTA TTTTTATATTTTTTT TERM 511 488062 - 488046 - g 74 -2.3 -5.67063 | opp_overlap 488046, overlap 488023 TTTATTAGAAAAAAA TCAAGAT ATG ATATTGA ATTTTGCATATAAAA TERM 512 488663 - 488643 - g 71 -7.1 -3.88498 | opp_overlap 488645 CTTTTATATATTAAA TATTTTTTT TAA AAAAAAATA TAATCCTCTTATTTT TERM 513 488744 - 488790 + G 74 -4 -5.24129 | opp_overlap 488753, overlap 488745 AAAAAAAAATAAGCA TTTATGTAATGTTAGAAAAATA TAA TATTTTTGTAACAAGACGTAAG TTTTTTATCAAGGCA holA 487945 - 488940 + | DNA polymerase III delta subunit TERM 514 489076 - 489066 - g 82 -2.6 -5.93809 | TTTCTATAAAAAAAA TAAT ACT ATTA CCCAATAACTATCCT nadD 488963 - 489607 + | nicotinate-mononucleotide adenylyltransferase (YbeN) TERM 515 489655 - 489641 - f 100 -5.8 -6.30182 | opp_overlap 489641 TCACATAAAAAAAAA TCTATT TAA AATAGA TTCGATAAAAAAATG sirA 489668 - 489898 + | sulfur transfer protein (YhhP) TERM 516 490038 - 490016 - T 95 -10.8 -5.24989 | opp_overlap 490015 490014 GTATACATTAAAAAA TTCTATTACT ATT AGTAATAGAA AATATTTTATATATT asd 491160 - 490045 - | aspartate-semialdehyde dehydrogenase yhgN 491456 - 492046 + | hypothetical protein TERM 517 492089 - 492067 - f 79 -9.3 -3.62775 | ATTATTTTTTAAGAA CCTGTTATT AATGG AATAACAGG TTAAAATAATCGACT pgk 492159 - 493331 + | phosphoglycerate kinase fba 493347 - 494423 + | fructose-bisphosphate aldolase yggB 494559 - 495404 + | mechanosensitive channel MscS TERM 518 495560 - 495535 - g 71 -4.1 -5.11063 | opp_overlap 495529, overlap 495529 495536 ATTATTGAAGAAAAA CCTTTTTCTAA TATT TTTGAAAAAGA GATATTTATTTATGA TERM 519 495782 - 495772 - g 74 -2.6 -5.60689 | TTAGATAATAAAAAA TTTT TTG AAAA TTGCAGTAAAAAAAA TERM 520 495840 - 495856 + G 70 -5.3 -4.58424 | opp_overlap 495853 ATTTTTAATGGCCAG TATATTT AAA AAATATA TTTTATATCGTCCTG TERM 521 496342 - 496323 - g 77 -2.2 -5.81032 | TAAGTCTAAAAAAAA TAAAGTAA TCAA TTGCTTTA AAAAAAATAAAAATA TERM 522 497152 - 497141 - g 70 -3 -5.25799 | AAAATAACACAAAAA TAGA AAAA TCTA TTCAAATAATTCAAA TERM 523 497186 - 497206 + G 80 -9.9 -2.94232 | opp_overlap 497186, overlap 497185 497183 AATGGATAGAAATAA TTGATGATA GTT TATCATCAA ATTATTTAAAAAAAA TERM 524 497206 - 497186 - g 91 -9.9 -4.16301 | opp_overlap 497186 497185 497183 AATGGATAGAAATAA TTGATGATA GTT TATCATCAA ATTATTTAAAAAAAA TERM 525 498005 - 497991 - g 70 -2.2 -5.42164 | CATAAATAATAAAAA TATAAC AAA ATTATA CCAACACTACCTTCT TERM 526 498530 - 498508 - g 71 -2.8 -5.38839 | TATACAAAAATAAAA GCATATAAAA AAT TATTATATAC CTGGAAAGGAGATAA recC 495463 - 498687 + | exodeoxyribonuclease V 125 kDa polypeptide TERM 527 499394 - 499374 - g 72 -7.1 -3.98016 | opp_overlap 499386, overlap 499372 ATCATGAAGAAAATA TAAAAAAAA TAA TTTTTTTTA AAGAAATGTGGTTGA TERM 528 499667 - 499655 - g 74 -4.9 -5.10526 | opp_overlap 499659 ATATTAAAAAAGAAA TTTTC ATT GAAAA ATGTCATTATAATCT TERM 529 501389 - 501379 - g 87 -2.6 -6.23545 | overlap 501388 TTTAAACAAAAAAAA TATT AGA AATA CTTGGAGTATAACAA recB 498692 - 502216 + | exodeoxyribonuclease V 135 kDa polypeptide TERM 530 503235 - 503212 - g 83 -7.6 -4.68994 | overlap 503213 ATTAGTATTGAAAAA CTTACACAAT ATAA ATTGTGTAAA AAAATAAATAAAAAA TERM 531 503234 - 503213 - g 79 -8.9 -3.40674 | overlap 503212 TTAGTATTGAAAAAC TTACACAAT ATAA ATTGTGTAA AAAAATAAATAAAAA recD 502222 - 504030 + | exodeoxyribonuclease V 67 kDa polypeptide argA 505397 - 504069 - | N-acetylglutamate synthase TERM 532 505408 - 505424 + H 70 -8.1 -3.17888 | overlap 505406 TTCATATCAATCCTC TTGCATT TTT AATGCAA TATATATATTATTTT mltA 505764 - 506843 + | membrane-bound lytic murein transglycosylase A precursor TERM 533 506895 - 506883 - g 74 -2.7 -5.65678 | AGAAAATATAAAAAA TGAAT ATA ATCCA ATCAGGAATTACAGC TERM 534 507056 - 507036 - g 73 -5.5 -4.67556 | overlap 507038 AGAACATCTTAAAAA TATATGTTC CTG GAACATATG AAATACCAACTATTG TERM 535 507054 - 507038 - g 78 -8.1 -3.9442 | overlap 507036 AACATCTTAAAAATA TATGTTC CTG GAACATA TGAAATACCAACTAT ribH 506882 - 507364 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 536 507941 - 507930 - g 76 -4.4 -5.252 | TATTTTTATAAAAAA CGTA AATA TACG AAATTATTTGATTAA thiL 507394 - 508365 + | thiamin-monophosphate kinase TERM 537 508367 - 508347 - f 72 -8.5 -3.12685 | opp_overlap 508346 508347, overlap 508346 CTTTAAAAAAAAAGG TTTTAATCA CTT TGATTAAAA GTTTATAAAAAATTT TERM 538 508347 - 508367 + F 71 -8.5 -2.92668 | opp_overlap 508347 508346, overlap 508346 CTTTAAAAAAAAAGG TTTTAATCA CTT TGATTAAAA GTTTATAAAAAATTT ribD1 508421 - 508846 + | riboflavin deaminase ribD2 508889 - 509512 + | riboflavin reductase nusB 509549 - 509980 + | transcription antitermination protein NusB dxs 511861 - 510035 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 539 511011 - 511027 + g 70 -3 -5.26875 | GGATTTAGCTCAGCA GGAAGA TAACC TTTTCC TTTTTTAGTTACAAG ispA 512767 - 511919 - | geranyltranstransferase yajR 513991 - 512819 - | hypothetical protein TERM 540 513383 - 513367 - G 86 -4.5 -5.91981 | opp_overlap 513367 AAAATCTAAAAAAAA CTTTATT TAA AACAAAG TTTAATACTTTTTTA TERM 541 513831 - 513785 - G 81 -9.8 -3.05384 | opp_overlap 513785 513799, overlap 513789 513797 513799 TTTCTTTCGATTGAA TTTATCAGATAATATTCCAAAT GGA ATTTGAAAAATTACCTGAGAAA TTCCATAAATACCCA TERM 542 513827 - 513789 - G 81 -10.6 -2.54896 | opp_overlap 513785 513799, overlap 513785 513797 513799 TTTCGATTGAATTTA TCAGATAATATTCCAAAT GGA ATTTGAAAAATTACCTGA GAAATTCCATAAATA TERM 543 514381 - 514366 - g 74 -9 -2.94708 | overlap 514351 514365 GACCTGCTAAACAAG CCAGCA AAAT TGCTGG AATACCTAAACCAGT yccK 514065 - 514409 + | hypothetical protein cyoE 515287 - 514430 - | protoheme IX farnesyltransferase TERM 544 514784 - 514761 - G 70 -3.2 -5.33331 | overlap 514764 GAAATAGAATAAAAA TGAGACATTT GCCA AAATATCACA ATAACAAATAACAAT cyoD 515632 - 515315 - | cytochrome O ubiquinol oxidase subunit IV cyoC 516249 - 515632 - | cytochrome O ubiquinol oxidase subunit III cyoB 518234 - 516246 - | cytochrome O ubiquinol oxidase subunit I TERM 545 516282 - 516292 + g 91 -4 -6.08563 | opp_overlap 516282 AATATTTTTCCAATA TTGA TGC TCAA TTTTTTTTATCTCTT TERM 546 517334 - 517324 - G 75 -5.4 -4.82901 | CGTTTTTTAGAAAAA GTAG CCA CTAC CTCTGAAAATACACC cyoA 519129 - 518239 - | cytochrome O ubiquinol oxidase subunit II TERM 547 518329 - 518341 + g 84 -3.5 -5.77853 | overlap 518323 ATATTGGTTTTTAAT TTTAT TAA ATAAA TTTTTTTTAACACTT TERM 548 519370 - 519391 + H 77 -2.5 -6.13503 | gap 1, opp_overlap 519361 519359 519370 519375, overlap 519375 ATAATACTATTAAAA TAGCATAAAA AAA TTTTAT-CTA TTTTTTTTATTAATA bolA 519428 - 519742 + | BolA protein TERM 549 519916 - 519904 - g 72 -3.4 -5.21683 | ATGGAAAAAAATAAA GATG CAGGT CATC GTGTTACAATTAAGA TERM 550 520199 - 520183 - g 100 -6.7 -6.35605 | opp_overlap 520183 520186 GAAGATAAAAAAAAA GAATATT TTG AATATTC TGTAATTTACGAACT TERM 551 520503 - 520513 + G 78 -2.6 -5.78622 | opp_overlap 520494 520511, overlap 520494 AATCAATCATTTTGT TAAT GAC ATTA TTTTTTTTAAAATAA TERM 552 520872 - 520857 - g 72 -4.8 -4.93661 | overlap 520865 ATATCAAGAAGAAAA TTCTAA TATT TTAGAA AAAAAATACCACATG TERM 553 521155 - 521140 - g 72 -4.8 -4.88222 | ATTAAAATTGAAAAA CAAAAT TGGA ATTTTG AACGCTTTTTAAATT tig 519877 - 521205 + | trigger factor clpP 521340 - 521966 + | ATP-dependent Clp protease proteolytic subunit clpX 522065 - 523354 + | ATP-dependent protease ATP-binding subunit TERM 554 524615 - 524590 - g 75 -3.3 -5.43329 | AAAAATAAAATAAAA GGTCCTATT TTATGTTT AATAGGGCC ACCTGGTGTAGGAAA TERM 555 525541 - 525529 - g 77 -6.3 -4.72986 | opp_overlap 525519 525529 GATTTTCATGAAAAA CATGA TAT TCATG TTCATGTTCCTGAAG lon 523546 - 525879 + | ATP-dependent protease LA TERM 556 525944 - 525917 - f 95 -4.8 -6.28967 | opp_overlap 525918 525920, overlap 525918 TATAAATAAAAAAAA CTTGGCTGACAA AGAA TCGTCAGCCTAT ATATTTTAATATAAT TERM 557 525943 - 525918 - f 80 -8.3 -4.3372 | opp_overlap 525918 525920, overlap 525917 ATAAATAAAAAAAAC TTGGCTGACAA AGAA TCGTCAGCCTA TATATTTTAATATAA TERM 558 525920 - 525941 + F 73 -8.7 -3.29568 | opp_overlap 525918 525917, overlap 525918 AAATAAAAAAAACTT GGCTGACAA AGAA TCGTCAGCC TATATATTTTAATAT TERM 559 526328 - 526314 - g 71 -7.2 -3.86031 | TCAATTAATTAATAA TGTTCT TTT AGAACA ATATGCAAAAAATAT TERM 560 527183 - 527164 - g 91 -2.2 -6.37666 | ATAAAACAAAAAAAA TCATTAGA TTTA TATAATGA ACTAAAAAATAAAAT TERM 561 527311 - 527293 - g 70 -3.2 -5.24129 | TGGTTTGATAAAAAA TCAATACC TAA AGTATTAA ATATTCCTATATTAA TERM 562 527475 - 527453 - g 85 -7.2 -4.94811 | overlap 527449 TTAAAAATAAAGAAA TTCAACATTT CGA AAATGTTAAA AAAAATATTATAAAA ppiD 526021 - 527892 + | peptidyl-prolyl cis-trans isomerase D TERM 563 528431 - 528413 - f 73 -4.7 -5.11475 | TAAAAAAAGAGAAAA CATATTT AAAAA AAATATG TAATAAAAAGTAGTA TERM 564 528803 - 528763 - f 90 -7.3 -5.52986 | opp_overlap 528801, overlap 528785 528801 ATGTTATCAAAAAAA TTATTTTTAGATCAAAA AAAAACA TTTTTATCTAAAAATAA ACACTTTATTGTTAA TERM 565 528802 - 528785 - f 77 -2.1 -6.19443 | opp_overlap 528801, overlap 528763 528801 TAGATCAAAAAAAAA CATTTTT ATCT AAAAATA AACACTTTATTGTTA mdl 528859 - 530628 + | multidrug resistance-like ATP-binding protein Mdl TERM 566 532030 - 532059 + GF 72 -6.6 -4.22927 | opp_overlap 532029 GATGCCTAAAGGTAT TTATTCCCTTCT AGGAGA AGAAGGTAATAA TTTATCTGTTGGTCA mdlB 530600 - 532372 + | multidrug resistance-like ATP-binding protein MdlB dnaX 532667 - 533752 + | DNA polymerase III subunits gamma and tau TERM 567 534048 - 534036 - f 78 -2.7 -6.07374 | ATAAAAAATAAAAAA TATGA CTT TCACA TTACAAAAAAGAGAT ybaB 534072 - 534401 + | hypothetical protein TERM 568 534441 - 534461 + F 80 -7.1 -4.82667 | opp_overlap 534441 534435 534445, overlap 534445 TATGCTAAATAAGTA TAAATTTAT TGA ATAAATTTA TTTTTACTATGATAA TERM 569 535671 - 535659 - g 70 -6.3 -4.12448 | opp_overlap 535657, overlap 535657 AAATAATGAAAAATA CCAAA TTT TTTGG AATCAATTCGGTCTC TERM 570 536117 - 536097 - g 72 -4.7 -4.97888 | overlap 536099 AAAAAAAGTTAAAAA CATACTTGG CAA CCAAGTAAA AGATGTAAGATTAAC TERM 571 536115 - 536099 - g 87 -9.5 -4.05905 | overlap 536097 AAAAAGTTAAAAACA TACTTGG CAA CCAAGTA AAAGATGTAAGATTA htpG 534547 - 536421 + | heat shock protein 90 TERM 572 536462 - 536429 - f 78 -4 -5.72254 | opp_overlap 536432, overlap 536431 536432 TTAAATAATAAAAAA CATGATTACTACTA TTATAT TAGTAGTAATCTTT AGATTAACTTATACA TERM 573 536460 - 536431 - f 74 -6.6 -4.47161 | opp_overlap 536432, overlap 536429 536432 AAATAATAAAAAACA TGATTACTACTA TTATAT TAGTAGTAATCT TTAGATTAACTTATA TERM 574 536432 - 536459 + F 83 -10.1 -3.78811 | opp_overlap 536431 536429 536432 AATAATAAAAAACAT GATTACTACTA TTATAT TAGTAGTAATC TTTAGATTAACTTAT TERM 575 536459 - 536432 - f 79 -10.1 -3.24636 | opp_overlap 536432, overlap 536431 536429 AATAATAAAAAACAT GATTACTACTA TTATAT TAGTAGTAATC TTTAGATTAACTTAT adk 536494 - 537141 + | adenylate kinase TERM 576 537177 - 537191 + F 70 -7.8 -3.322 | TGAACCTGTGACCTA CGGCTT AGA AGGCCG TTGCTCTATCCAGCT folD 537372 - 538229 + | methenyltetrahydrofolate cyclohydrolase cysS 539620 - 538226 - | cysteinyl-tRNA synthetase TERM 577 539650 - 539675 + H 75 -9.3 -3.08371 | opp_overlap 539650 539655, overlap 539655 AAAAATATATTTAAA GAAAATAATAT AAAT ATATTATTTTC TATATTACCAATGTG TERM 578 539675 - 539650 - H 80 -9.3 -3.81473 | opp_overlap 539650 539655, overlap 539655 AAAAATATATTTAAA GAAAATAATAT AAAT ATATTATTTTC TATATTACCAATGTG TERM 579 539870 - 539850 - H 81 -7.1 -5.04082 | GAAAGAATAATAAAA TATTTTTTT GTA AAAAAAATA GGGGTTAATAATGAA ybeD 539881 - 540144 + | hypothetical protein TERM 580 540211 - 540179 - T 75 -9.3 -3.15427 | opp_overlap 540170 540175 540186 540188 AATATTTTGTACTAA TATGGTACAGCTC TCTTTAG GAGCTGTACTATA AAACATATTTGTTTT TERM 581 540240 - 540220 - T 70 -8.5 -2.69458 | opp_overlap 540220, overlap 540219 540217 TACTATAAAACATAT TTGTTTTTA TAT TAAAAACAA TTGAATAACTTTATA TERM 582 540220 - 540240 + T 72 -8.5 -3.12446 | opp_overlap 540220 540219 540217 TACTATAAAACATAT TTGTTTTTA TAT TAAAAACAA TTGAATAACTTTATA cspE 540460 - 540251 - | cold shock protein E TERM 583 540709 - 540755 + r 83 -10.5 -3.63068 | gap 1, opp_overlap 540724, overlap 540724 AAAAAATAATTTATT TCAAGTATAAAAAAACCCGAAA AAAA TTTCGGGTTTTTTT-TCCTGGA TTTGACCTACTCTCA TERM 584 540724 - 540741 + r 100 -9.9 -5.86965 | opp_overlap 540724, overlap 540709 TCAAGTATAAAAAAA CCCGAAA AAAA TTTCGGG TTTTTTTTCCTGGAT TERM 585 540741 - 540724 - R 100 -9.9 -5.71983 | opp_overlap 540709 540724 TCAAGTATAAAAAAA CCCGAAA AAAA TTTCGGG TTTTTTTTCCTGGAT TERM 586 540970 - 540960 - R 76 -6.8 -4.62336 | opp_overlap 540960 AGTTTATTTTAAAAA CACC TCT GGTG TTGTAAGGTTAAGCC TERM 587 541660 - 541676 + r 73 -9.4 -2.53876 | opp_overlap 541650 CCAGACACTGTCTCT GTGCCG GATTA CGGCAC TAGGTTAGAATACCG TERM 588 542589 - 542605 + r 77 -8 -4.08546 | TTGGTTTTTCGGCGA GCAGGT TTTTC ACCTGC TTTATCGTTACTCAT TERM 589 543959 - 543971 + r 73 -4.9 -5.10163 | overlap 543968 TAAAGAGCTTTTTGT GTTAA ATG TTAAC TTTTCTTTTAAAGTT TERM 590 544025 - 544038 + r 71 -2.5 -5.73978 | opp_overlap 544025 TAAATTAGTATATAA TATTT TTAT AAATA TTTTTTATTTATCGT aroE 545095 - 544274 - | shikimate 5-dehydrogenase TERM 591 544443 - 544421 - G 93 -3.5 -6.23209 | opp_overlap 544421 544425 CCAATCAAAAAAAAA TGTATTATC TGTTT GATAATTCA TATCATAAAAGCATG TERM 592 544834 - 544848 + g 72 -5.7 -4.46267 | ACGTATTAACAGATT GAGCA ACTTC TGCTC TTTTAGTTAACTTAT rimN 545615 - 545088 - | dsRNA-binding protein, putative ribosome maturation factor (YrdC) TERM 593 545399 - 545412 + g 91 -3.9 -6.11392 | ATGGTCCAGGCCAAT GAAAA AAAA TTTTC TTTTTTTGTTTATTT smg 546186 - 545713 - | Smg protein TERM 594 546020 - 546040 + g 89 -7.7 -5.01732 | opp_overlap 546020 546018, overlap 546022 ATAGATGGAATAATA TTTTTCTTG TAA CAAGAAAGA TTTTTTAACCAACTT TERM 595 546317 - 546305 - H 75 -3.5 -5.69379 | opp_overlap 546305 ATATAATGAAAAAAA TTTTT ACT AAAAA ATATAATAAGTTTTT def 546430 - 546951 + | polypeptide deformylase TERM 596 547905 - 547877 - g 90 -3.3 -6.07627 | opp_overlap 547894, overlap 547880 547896 ATTTCTAAAAAAAAA TTATTTAAAATAG GAA CTATTTTATAAAA AAATATTTAATTTAT fmt 546959 - 547903 + | methionyl-tRNA formyltransferase TERM 597 547988 - 547960 - T 100 -8.9 -6.07969 | opp_overlap 547963 547968, overlap 547963 TAAAATTAAAAAAAA TAAGCAAACGGTA TAT TTCCGTTTGCTTT AAAATTATATTTTTT TERM 598 547963 - 547985 + T 83 -10.6 -3.72485 | opp_overlap 547963 547960, overlap 547968 AATTAAAAAAAATAA GCAAACGGTA TAT TTCCGTTTGC TTTAAAATTATATTT TERM 599 547985 - 547963 - T 95 -10.6 -5.01676 | opp_overlap 547963 547968, overlap 547960 AATTAAAAAAAATAA GCAAACGGTA TAT TTCCGTTTGC TTTAAAATTATATTT rplQ 548423 - 548031 - | 50S ribosomal protein L17 rpoA 549457 - 548468 - | DNA-directed RNA polymerase alpha subunit rpsD 550106 - 549486 - | 30S ribosomal protein S4 rpsK 550527 - 550132 - | 30S ribosomal protein S11 rpsM 550901 - 550545 - | 30S ribosomal protein S13 rpmJ 551111 - 550995 - | 50S ribosomal protein L36 secY 552450 - 551137 - | preprotein translocase SecY TERM 600 551698 - 551720 + g 86 -7 -5.05601 | opp_overlap 551684, overlap 551684 551699 ACGACGACCTTGTTG ACGTTGTGCA TAA TGTACAACGA TTTTTCTCTGTCCTC TERM 601 551699 - 551719 + g 88 -10.5 -3.62276 | opp_overlap 551684, overlap 551684 551698 CGACGACCTTGTTGA CGTTGTGCA TAA TGTACAACG ATTTTTCTCTGTCCT rplO 552895 - 552461 - | 50S ribosomal protein L15 rpmD 553079 - 552900 - | 50S ribosomal protein L30 rpsE 553592 - 553089 - | 30S ribosomal protein S5 TERM 602 553507 - 553519 + g 70 -4.7 -4.7254 | AAAGAAAATATTCGA CCGCC TTT GACGG TTTTTGATACACGAT rplR 553976 - 553608 - | 50S ribosomal protein L18 rplF 554535 - 553978 - | 50S ribosomal protein L6 rpsH 554917 - 554525 - | 30S ribosomal protein S8 rpsN 555251 - 554946 - | 30S ribosomal protein S14 rplE 555808 - 555269 - | 50S ribosomal protein L5 TERM 603 555477 - 555461 - G 75 -8.7 -3.33671 | AGAGTGACTTGATAA TCCGCGA AAA TCGCGAA TACGTGGAACAGCAA rplX 556137 - 555823 - | 50S ribosomal protein L24 rplN 556531 - 556163 - | 50S ribosomal protein L14 TERM 604 556598 - 556638 + r 82 -5 -5.78622 | gap 1, opp_overlap 556600 556605, overlap 556600 556605 556637 CTGACATTTTATGAA CAT-AAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTGATA TTTTTTTTAAAATAC TERM 605 556600 - 556635 + r 91 -11.4 -3.30685 | opp_overlap 556600 556605, overlap 556598 556605 GACATTTTATGAACA TAAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTG ATATTTTTTTTAAAA TERM 606 556605 - 556630 + r 89 -9.1 -4.66395 | opp_overlap 556605 556600, overlap 556600 556598 TTTATGAACATAAAA CATGAGCAGAC GTGA GTTTGTTCATG TTTTGATATTTTTTT rpsQ 556896 - 556645 - | 30S ribosomal protein S17 rpmC 557093 - 556896 - | 50S ribosomal protein L29 TERM 607 557047 - 557061 + g 86 -2.2 -6.24157 | TGTAAAAGTTCTGTG TAAAGA TCT TTTTTA TTTTTTTTTCTAAAT rplP 557503 - 557093 - | 50S ribosomal protein L16 rpsC 558225 - 557524 - | 30S ribosomal protein S3 TERM 608 557700 - 557714 + g 70 -8.6 -2.752 | opp_overlap 557703 557705, overlap 557705 TTGCGCGTAATGTAT GAAGAG GAA CTCTTC CTTCTCTATACCACT rplV 558576 - 558244 - | 50S ribosomal protein L22 rpsS 558890 - 558612 - | 30S ribosomal protein S19 rplB 559731 - 558910 - | 50S ribosomal protein L2 rplW 560048 - 559746 - | 50S ribosomal protein L23 rplD 560650 - 560045 - | 50S ribosomal protein L4 rplC 561297 - 560668 - | 50S ribosomal protein L3 rpsJ 561639 - 561328 - | 30S ribosomal protein S10 TERM 609 561929 - 561885 - R 84 -8.9 -4.46073 | opp_overlap 561895 561900, overlap 561887 561891 561900 CTGTAATATAATAAA TATTAATCAAGAAAAGAGCAT CTT ATACTCTTTTCTTAATAAATT CAACTTTGATGTTAG TERM 610 561927 - 561887 - R 95 -11.5 -3.83144 | opp_overlap 561895 561900, overlap 561885 561891 561900 GTAATATAATAAATA TTAATCAAGAAAAGAGCAT CTT ATACTCTTTTCTTAATAAA TTCAACTTTGATGTT TERM 611 561923 - 561891 - R 95 -12.3 -3.55988 | opp_overlap 561895 561900, overlap 561887 561885 561900 TATAATAAATATTAA TCAAGAAAAGAGCAT CTT ATACTCTTTTCTTAA TAAATTCAACTTTGA TERM 612 561895 - 561919 + r 73 -8.7 -3.22091 | opp_overlap 561891 561887 561885 561900, overlap 561900 ATAAATATTAATCAA GAAAAGAGCAT CTT ATACTCTTTTC TTAATAAATTCAACT tufB 563154 - 561970 - | elongation factor EF-Tu fusA 565330 - 563222 - | elongation factor G TERM 613 565380 - 565362 - R 79 -6.8 -5.02074 | TTAGGTTTTAAAAAA TTGAGTCT CAT AAACTCAA TTGAGATAATTGCCT rpsG 565915 - 565445 - | 30S ribosomal protein S7 rpsL 566331 - 565957 - | 30S ribosomal protein S12 yheL 566752 - 566465 - | hypothetical protein yheM 567123 - 566764 - | hypothetical protein yheN 567528 - 567142 - | hypothetical protein fkpA 568336 - 567611 - | FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor argD 570024 - 568798 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 614 569052 - 569072 + g 74 -2 -5.63857 | overlap 569046 TAAAACGTTTATTAA TAATATTT AATTC AGATATTA TTTTTTTAGATTTTT TERM 615 570296 - 570286 - H 78 -2.6 -6.18768 | opp_overlap 570286 570295, overlap 570295 AAAATATAAAAAAAA TATA ATA TATA TAAATTATATTTTTA TERM 616 570579 - 570563 - g 74 -2.3 -5.56568 | opp_overlap 570566, overlap 570566 ATATCATTAAAAAAA CAACTAA TAT TTAGTTT TATACTTACTATTAT TERM 617 571182 - 571197 + G 77 -6.2 -4.64676 | TTACAAGCATGTCTA CAATAC TTAT GTATTG TTTTATTAAAAGTGA TERM 618 571437 - 571453 + G 73 -3.1 -5.46276 | opp_overlap 571440 TAATTAGTTCAAATA TATTATA TGG TATAGTA TTTTTTCTATCTATT yhfC 570341 - 571507 + | YhfC MFS transporter trpS 572576 - 571569 - | tryptophanyl-tRNA synthetase TERM 619 572387 - 572377 - G 76 -4 -5.40464 | opp_overlap 572377 572386 CAGGATAAATAAAAA GATA TTG TATC TAGTATAGATTTATT rpe 573285 - 572599 - | ribulose-phosphate 3-epimerase TERM 620 573990 - 574009 + r 78 -6.6 -4.86133 | opp_overlap 573976 573977 573989 573990, overlap 573977 ATTGTTTTAAAATAG CAATATTT TAAA AAATATTG TTTTTACTCTCTATA aroB 575259 - 574168 - | 3-dehydroquinate synthase TERM 621 574681 - 574666 - G 78 -2.6 -5.87996 | overlap 574667 TAACCAACAAAAAAA CGTTTT ATCA AAAACA ATAGCATATTTGATT aroK 575798 - 575277 - | shikimate kinase I TERM 622 576403 - 576391 - R 75 -3.5 -5.86061 | TCTCACCAAAAAAAA TAAAA CAC TTTTA TAAAACAGATTCTAA deoD 577105 - 576401 - | purine nucleoside phosphorylase deoB 578372 - 577149 - | phosphopentomutase prfC 580012 - 578432 - | peptide chain release factor 3 TERM 623 579559 - 579583 + g 77 -7.9 -4.2461 | CATCAAGAATTTCTA TTGGATCTCGA CTA TCGCGATCTAA TTTATTAATAAAAGT TERM 624 580397 - 580385 - R 81 -6.3 -5.48054 | AGCAAAATGAAAAAA TCATC TCA GATGA CACAGAAAAAACTTA nfuA 581702 - 581124 - | iron-sulfur cluster scaffold protein (YhgI) TERM 625 581806 - 581786 - R 87 -8.5 -4.59089 | opp_overlap 581786 581785 581788 TAAGTTATAAATAAA TATTTTCTT TAA AAGAAAATA CTTTAGTTAATAAAA TERM 626 581786 - 581806 + r 71 -8.5 -2.97029 | opp_overlap 581786, overlap 581785 581788 TAAGTTATAAATAAA TATTTTCTT TAA AAGAAAATA CTTTAGTTAATAAAA TERM 627 581975 - 581955 - R 75 -4.1 -5.67711 | overlap 581957 581959 CAAATAAAATAAAAA TTTATCTTT ATC AAAGATAGA TAAAACAATTAAATT TERM 628 582266 - 582283 + r 100 -11.3 -5.24551 | ATGAAAAAATGCGTT GCCCCAA AAAA TTGGGGC TTTTTATTGATTTGA ssb 582830 - 582315 - | single-strand binding protein TERM 629 583423 - 583413 - H 81 -2.6 -6.32976 | AAAAAAATAAAAAAA TTTT CAA AAAA CGACTCAAATAGATC dnaB 583500 - 584897 + | replicative DNA helicase gshB 585144 - 586106 + | glutathione synthetase yqgF 586117 - 586524 + | predicted Holliday junction resolvase (YqgF) yggS 586642 - 587244 + | hypothetical protein TERM 630 587530 - 587512 - g 71 -7.6 -3.69447 | opp_overlap 587511 587516, overlap 587510 TTATTAAAAAATACA TCAATAAA AAA TTTATTGA ATGGTATTAAAAAAA yggW 587287 - 588417 + | predicted oxidoreductase (YggW) yggH 589143 - 588424 - | hypothetical protein TERM 631 589554 - 589544 - gH 73 -5.4 -4.7064 | AAGAAAAAATATAAA GGAA TAT TTCC GGATCAATTTTCAAA mutY 589241 - 590293 + | A/G-specific adenine glycosylase TERM 632 590295 - 590272 - gf 75 -7 -4.23434 | opp_overlap 590272, overlap 590286 GAAAATACTTGAAAA TTTTAAAAAA AATA TTTTTTAAAA AAAGGAGTATTAAAA yggX 590265 - 590546 + | protein that protects iron-sulfur proteins against oxidative damage (YggX) TERM 633 591338 - 591319 - g 80 -5.2 -5.27477 | opp_overlap 591319, overlap 591332 ATGTTAATCAAAAAA TAAAAAAA AATA TTTTTTTA TATTCAAAAAACAAT murI 590640 - 591428 + | glutamate racemase yeeX 592941 - 593249 + | hypothetical protein TERM 634 593353 - 593379 + F 77 -2.5 -6.06723 | TATATATACCAAAAA TTTTTATGTGT GTCAA ATATATAAAAA TTTTTTTTTAAAAAA TERM 635 593396 - 593380 - f 76 -5.3 -5.14985 | opp_overlap 593380 TCAAATATATAAAAA TTTTTTT TTA AAAAAAA TAAAATTTCTAAAAG pyrE 593630 - 594271 + | orotate phosphoribosyltransferase dut 594747 - 594283 - | deoxyuridine 5'-triphosphate nucleotidohydrolase cysQ 595588 - 594791 - | CysQ protein TERM 636 595122 - 595132 + g 76 -4 -5.38549 | ACATTAATCTTTTTC TTTG ATC CAAA TTTTTCTTCTTTCCA rplI 596027 - 595575 - | 50S ribosomal protein L9 rpsR 596303 - 596076 - | 30S ribosomal protein S18 rpsF 596770 - 596429 - | 30S ribosomal protein S6 TERM 637 596470 - 596488 + g 73 -4.6 -5.00884 | TTAATTTTAAAATAG GTGATAGT TCG ACTATTGC TTTTTTCACAGACAT vacB 599173 - 596936 - | VacB protein TERM 638 597805 - 597831 + g 71 -7.5 -3.65542 | opp_overlap 597811, overlap 597804 TTTTAATTCGAAGGT TAGAATCTAAA ACAAA TTTAGGTTCTA TATTTTCAAAATAAA TERM 639 598343 - 598377 + g 75 -5.2 -4.95806 | overlap 598340 AAAAGGGAAATGTCG TAAATCTGTACGATTT TTA AAATCATATTGATTTA TTTTTCTACTAATTT purA 600562 - 599261 - | adenylosuccinate synthetase TERM 640 600296 - 600306 + g 76 -4 -5.5454 | AACAAAAATATTATG TGTT TCT AACA TTTTTATTTCTTTAA hflC 601544 - 600612 - | HflC protein hflK 602767 - 601547 - | HflK protein miaA 603832 - 602924 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 641 602986 - 603000 + g 78 -5.8 -4.82518 | opp_overlap 602986 602985 602988 CTAAAATAGTAGAAG TAGAAT GGT ATTCTA TTTTGTTAATATTTT TERM 642 603717 - 603697 - G 70 -8.3 -3.05616 | opp_overlap 603699, overlap 603696 603699 GATGATTATATAAAT CAGAAAAGC TTG GCTTATCTG TTCCAATATCCATTC mutL 605624 - 603870 - | DNA mismatch repair protein MutL TERM 643 604233 - 604220 - G 75 -5.3 -4.93877 | TTTTATTAAATAAAA TCAAG TATT CTTGA GATGTAAGATTAATT TERM 644 604529 - 604517 - G 77 -2 -5.75342 | opp_overlap 604517 TTTTTTTAAAAAAAA TTGA AGATA TCAA TGTTAAAAAAGTAGG TERM 645 605679 - 605669 - R 75 -4 -5.60993 | opp_overlap 605669 CTGTTTATAAAAAAA GAAT AGC ATTC TTTCAAATTTTGTAA mtlD 606881 - 605724 - | mannitol-1-phosphate 5-dehydrogenase TERM 646 605859 - 605871 + g 77 -4.9 -5.22006 | opp_overlap 605870 AGATGAAAGCTCTAT TGATT CCA AATCA TTTTTATTATGGTAA TERM 647 606141 - 606154 + g 74 -2.4 -5.74122 | TTCCATGGCAGATCT TACG ATAACA CGTA TTTTTTTGTCTGATA mtlA 608821 - 606923 - | PTS system mannitol-specific IIABC component TERM 648 608881 - 608897 + r 72 -5.3 -4.86862 | opp_overlap 608873 608880 608881 608884, overlap 608873 608880 CTTCAAATTAAATAT TAATAAT TAA ATTATTA TTTTAATTTTTTAAA pgi 610644 - 608995 - | glucose-6-phosphate isomerase TERM 649 609686 - 609668 - G 83 -4.7 -5.68023 | TCAGAACCAAAAAAA TTAGTAT ACCAA ATACTAA TTAAGGCTAATAATA TERM 650 610252 - 610265 + g 71 -3.9 -5.00616 | opp_overlap 610248, overlap 610248 ATGAATAACCATTTT TGAAA AATT TTTCA TTTTTTCCAACAACG TERM 651 610746 - 610720 - H 84 -5.4 -5.75538 | opp_overlap 610722 610724 610725 610745, overlap 610714 610724 610734 610744 610745 TCTAAAAAATAAAAA TATATTTTTAAA TAT TTTAAAAATTTA AAATTATTTTATTTT orn 610958 - 611512 + | oligoribonuclease TERM 652 611539 - 611562 + F 70 -7 -4.0162 | opp_overlap 611539 611552 AGAAAACTTGAAAAA TTTATTTTAT ATAT ATAAAATAAA TTTATAGTATAAAAA TERM 653 611562 - 611539 - f 78 -7 -4.75063 | opp_overlap 611539, overlap 611552 AGAAAACTTGAAAAA TTTATTTTAT ATAT ATAAAATAAA TTTATAGTATAAAAA TERM 654 611642 - 611626 - f 74 -9.5 -2.62616 | overlap 611629 TCAGTTGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCAA TERM 655 611911 - 611899 - f 85 -3.5 -6.26417 | opp_overlap 611899 611900, overlap 611900 TATCAGAAAAAAAAA TTTTT TAA AAAAA ATAATTTTTATTATA amiB 611965 - 612678 + | N-acetylmuramoyl-L-alanine amidase precursor TERM 656 612688 - 612676 - T 72 -3.5 -5.60864 | opp_overlap 612682 612683, overlap 612667 612682 612683 TACATATTAAAAAAA TAAAA GTT TTTTA AAAAATATTAATTGT rpmE 613003 - 612785 - | 50S ribosomal protein L31 TERM 657 613211 - 613226 + H 76 -4.8 -5.44198 | TGTATATGTTTTATT TTAATG TCTA CATTAA TTTTTATTGTTTATT hslV 613609 - 614121 + | ATP-dependent protease peptidase subunit hslU 614134 - 615465 + | ATP-dependent protease ATP-binding subunit TERM 658 615479 - 615517 + F 72 -4.1 -5.41143 | opp_overlap 615516, overlap 615470 615516 AATTTTTATTCAAAA TATTTATCCATTATTAT TTTTT ATTAAAATGGATGAATA TTTTTTTAAAAAATA TERM 659 615866 - 615850 - g 86 -10.9 -2.85838 | overlap 615847 AATTAACACTAAGTA TTCCTGG ATA CCAGGAA AAAGAATTAGATATA ibpA 615672 - 616145 + | 16 kDa heat shock protein A TERM 660 616201 - 616157 - f 100 -8.2 -5.81622 | gap 1, opp_overlap 616167, overlap 616164 ATAAAATTAAAAAAA TA-TAAAATCACTGCGCTTAT AAAA ATAAGCACAGTGATCTAACTA AAAATTATTGAGAAT TERM 661 616193 - 616164 - f 100 -14.5 -5.11475 | opp_overlap 616167, overlap 616157 TAAAAAAATATAAAA TCACTGCGCTTAT AAAA ATAAGCACAGTGA TCTAACTAAAAATTA TERM 662 616780 - 616790 + G 82 -5.4 -5.4505 | opp_overlap 616780 AAAAATTCTTTAAAT GGAA GAA TTCC TTTTTTATTAAGAAA fpr 616222 - 616980 + | ferredoxin-NADP reductase yjeA 617972 - 616998 - | lysyl-tRNA synthetase TERM 663 617917 - 617896 - G 70 -3.1 -5.27709 | opp_overlap 617896 617900 TTAGAAAAAAATAAA CGAATATTA GAAA TAATATTTG ATCTTTTGATTAAAT TERM 664 618404 - 618415 + G 71 -4.4 -4.87008 | overlap 618402 GTATATTTTTACTTT CTTC TAAA GAAG TTTCTTTTATATCTT kdtB 618043 - 618540 + | lipopolysaccharide core biosynthesis protein kDatB TERM 665 618587 - 618557 - T 81 -9.9 -3.72893 | opp_overlap 618559, overlap 618559 GATTTTTTTATCAAA TATAGTAGGGTAT GTTAT ATACCCTACTATT TATTTTTAACATTAT TERM 666 618585 - 618559 - T 95 -12.5 -3.44848 | opp_overlap 618559, overlap 618557 TTTTTTTATCAAATA TAGTAGGGTAT GTTAT ATACCCTACTA TTTATTTTTAACATT TERM 667 618559 - 618585 + T 100 -13.2 -4.88293 | opp_overlap 618559 618557 TTTTTTTATCAAATA TAGTAGGGTATG TTA TATACCCTACTA TTTATTTTTAACATT yba3 619730 - 618627 - | hypothetical protein yba4 620061 - 619723 - | hypothetical protein TERM 668 619779 - 619792 + g 74 -2.5 -5.66684 | overlap 619770 619767 TATCACTATTATCAG TAATA TTGT TATTA TTTTTTTCTAAATTA TERM 669 620097 - 620111 + H 72 -4.4 -5.47399 | opp_overlap 620099 AATTATTTTTTAGTA TATTTT TAT AAAATA TTTTTTTGAACTTAA yhiQ 620217 - 620957 + | predicted SAM-dependent methyltransferase (YhiQ) TERM 670 620999 - 620962 - T 71 -5.1 -5.01732 | gap 1, opp_overlap 620965 620967, overlap 620965 AACCTTTTTAAAAAA TA-ATAGGAGTACATTTC TTT AACACGTACTCCTATCTA ATCAAATAATTTTAC TERM 671 620995 - 620965 - T 87 -8.4 -4.61482 | opp_overlap 620965 620967, overlap 620962 CTTTTTAAAAAATAA TAGGAGTACATTTC TTT AACACGTACTCCTA TCTAATCAAATAATT pitA 622512 - 621040 - | low-affinity inorganic phosphate transporter TERM 672 621265 - 621287 + g 78 -5.7 -4.99643 | gap 1, overlap 621263 AGCTGTTATTTGAGC TGACATA-GC TTGT GCATATGTCA TTCTTTTTTTTCCTA TERM 673 621629 - 621608 - G 79 -8.9 -3.49102 | opp_overlap 621607 ATATTTTTTATAGAA TTGTAAGAT TGAG ATCTTACAA CTAAATTATTGATTT TERM 674 621678 - 621696 + g 80 -6.2 -4.89339 | TATTTGATTTTTTTA TATTTTTT TCT AAAAAATA TTTTTCTAAATGATT TERM 675 621893 - 621912 + g 73 -4.3 -5.07486 | opp_overlap 621893, overlap 621876 ATTCTAATTAGAAAT GGTGGTA TTTTTT TACCATC TTTTTCTTCACGCTC TERM 676 622682 - 622663 - R 81 -5.2 -5.61596 | opp_overlap 622663 ATTTTTATAAAAAAA TTAAAAAT ATTT ATTTTTAA AATTTTTTTTGTTTT dapF 624785 - 623931 - | diaminopimelate epimerase TERM 677 624455 - 624472 + g 70 -2.1 -5.42605 | TAGTTAAAGGTTTTT TTTTAGT ACTA ATTAAAA TTTTCTTTTTGTTAG cyaY 624974 - 625324 + | CyaY protein TERM 678 625418 - 625398 - f 75 -2.7 -5.93252 | opp_overlap 625391 625401, overlap 625391 625401 TTTAAAAATAAAAAA TATTTTTAT TTA ATAAAATTA TAAAAAATGCATCTA hemC 625453 - 626397 + | porphobilinogen deaminase TERM 679 627242 - 627262 + T 72 -2.7 -5.78622 | opp_overlap 627242 TTCGCCGTTTTCAAA TAAAAAAAT ATA ATTTTCTTA TTTTTTTTGGGGTGG rho 628894 - 627635 - | transcription termination factor Rho trxA 629350 - 629024 - | thioredoxin TERM 680 629538 - 629559 + r 90 -7.5 -5.63504 | ATTTTATATCTTCTT TTTTTTAGA TGAA TCTAAAAAA TTTTTTTCTCCCATT rep 631489 - 629552 - | ATP-dependent DNA helicase Rep TERM 681 629895 - 629878 - G 80 -9.9 -2.81922 | overlap 629877 629875 629880 TATCATCTAAAATAT CACGGAT TGTC ATCCGTG TAACAATTTGAAATA ilvC 633031 - 631559 - | ketol-acid reductoisomerase TERM 682 631625 - 631641 + g 70 -2.3 -5.42514 | overlap 631611 GCATCCGATAATTTC TATAGGA TGA TTCTGTA TTTTTTGATTTATCC ilvD 634932 - 633079 - | dihydroxy-acid dehydratase TERM 683 634446 - 634457 + g 70 -3 -5.25154 | opp_overlap 634446 634441, overlap 634441 TAGCATCAACTAAAT CAAT TTTT ATTG TTTTATTATTTTTTT mitF 635421 - 636635 + | membrane-bound lytic murein transglycosylase F (YfhD) iscU 636666 - 637049 + | Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster TERM 684 637064 - 637093 + F 74 -7.3 -4.1922 | overlap 637059 637066 ACTTTATAATTATTT GGTGTTGAAAGAA TATT TTCTTTCAACATA TTATATTTTATTTTT TERM 685 637066 - 637091 + F 95 -12.1 -3.63424 | overlap 637064 637059 TTTATAATTATTTGG TGTTGAAAGAA TATT TTCTTTCAACA TATTATATTTTATTT hscB 637144 - 637668 + | chaperone protein HscB TERM 686 639163 - 639148 - g 95 -3.4 -6.4753 | opp_overlap 639149, overlap 639149 GTAAAGAAAAAAAAA TTATTA TTGA TAATAA TATTACATTAAAAAA TERM 687 639165 - 639149 - g 70 -5.3 -4.44858 | opp_overlap 639149, overlap 639148 TAAAGAAAAAAAAAT TATTATT GAT AATAATA TTACATTAAAAAATT TERM 688 639203 - 639179 - g 76 -4.5 -5.23316 | opp_overlap 639171, overlap 639171 639196 639199 TATTACATTAAAAAA TTTAAATATTT CTC AAATATTGAAA GATTCATTAAAACAT hscA 637680 - 639515 + | heat shock protein HscA fdx 639515 - 639850 + | ferredoxin 2fe-2s yfgK 641208 - 639847 - | 50S ribosomal subunit stability factor (YfgK) TERM 689 640133 - 640149 + g 76 -8.1 -3.82097 | opp_overlap 640136, overlap 640125 640136 CTAATCTTTCTTTTA GAATCTT CAT AAGATTC TTTGATAGATTTAAA TERM 690 640629 - 640655 + g 91 -3.8 -5.95166 | opp_overlap 640635, overlap 640631 640632 TTCCAACATTTGGTC GACCAATAAAAG CTA CTTTTATTGCTA TTTTTTTTAATTCCG TERM 691 640631 - 640653 + g 74 -6.4 -4.61485 | opp_overlap 640635, overlap 640629 640632 CCAACATTTGGTCGA CCAATAAAAG CTA CTTTTATTGC TATTTTTTTTAATTC TERM 692 640632 - 640652 + g 85 -9.9 -3.34451 | opp_overlap 640635, overlap 640631 640629 CAACATTTGGTCGAC CAATAAAAG CTA CTTTTATTG CTATTTTTTTTAATT yfgM 641882 - 641301 - | hypothetical protein TERM 693 641350 - 641402 + g 77 -2.9 -5.74288 | overlap 641353 TTAATAATTTCTTTA GATGCATTAGAATCTTCAATAAAAA GAC TTTTTTTCCAAGATTTTATTGCTTC TTTTTTATTGTTTAT