TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.783985 %AT, 350651 nt, 3035 terms. Intergenic: 0.866411 %AT, H2T: 45755 nt, 1106 terms; T2T: 10334 nt, 526 terms; H2H: 16927 nt, 1030 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|116514950|ref|NC_008513.1| Buchnera aphidicola str. Cc (Cinara cedri), complete genome (length 416380) TERM 1 582 - 568 - g 79 -4.4 -5.57054 | overlap 558 AATAATTTAAAAAAA TATTTT TCA AAAATA GGTCGATTAAAAACT TERM 2 785 - 774 - g 74 -3 -5.89827 | opp_overlap 774 AATTATTAAAAAAAA CTTA CATT TAAG TCCTTTATATAGTGG TERM 3 1731 - 1717 - g 71 -2.2 -5.83211 | overlap 1718 TATGAAAATAAAAAA CTTTAT TGT ATAAAA GATTATAGAGAAATT gidA 1 - 1905 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA gyrB 4374 - 1981 - | DNA gyrase subunit B TERM 4 2442 - 2455 + g 95 -3.9 -6.71862 | GATTTTTTTTTATTT GATAT GAAT ATATC TTTTTTTTTTCTTTT TERM 5 4384 - 4398 + r 77 -4.4 -5.86976 | overlap 4386 4388 TGACATAAAATTTCC TTTTTT ATA AAAAAA TTTTTTGTTTTATAA TERM 6 4428 - 4445 + r 79 -7.1 -4.92314 | opp_overlap 4428, overlap 4418 AGATTTTTATTTAAA TCTCTTT TAAA AAAGAGA TTTTTATAAATTAAT dnaN 5641 - 4535 - | DNA polymerase III, b subunit TERM 7 5041 - 5066 + g 89 -5.7 -5.56264 | overlap 5059 ATAATTCTAGTATAC TTTTTTTATTA ATAA TAATAGAAAAA TTTTTTATATTTAAA TERM 8 5550 - 5570 + g 89 -6.3 -5.33785 | overlap 5548 TTAATAATTATGTTT TCTAATATT GGA AATATTGGA TTTTTTGTAATAATT TERM 9 5590 - 5618 + g 79 -3.4 -6.07969 | opp_overlap 5606, overlap 5593 5607 TTGTAATAATTCTAT TCATTTTTTTAA ATGAG TTAAAAAAATCA TTTTTTTTAATTTTA TERM 10 5607 - 5628 + g 71 -6.1 -4.28774 | opp_overlap 5606, overlap 5593 5590 ATTTTTTTAAATGAG TTAAAAAAA TCAT TTTTTTTAA TTTTAAATTCCATAA dnaA 6960 - 5647 - | DnaA TERM 11 5682 - 5696 + g 100 -4.3 -6.95634 | opp_overlap 5682 AGAGATATATAAAAT CAGAA TAAAT TTCTG TTTTTTTTTTTTTAA rpmH 7220 - 7354 + | 50S ribosomal protein L34 TERM 12 7667 - 7677 + G 75 -2.6 -6.04324 | opp_overlap 7667 TGTACATTTATATGA TAAT AAA ATTA TTTTTTATTTTTTAC rnpA 7377 - 7721 + | hypothetical protein TERM 13 7833 - 7847 + F 90 -4.4 -6.4275 | overlap 7828 TATAATATTTTATTT TTTAAA TAT TTTAAA TTTTTTTTATTTTTA TERM 14 8612 - 8589 - g 72 -2.6 -5.9003 | opp_overlap 8594, overlap 8581 AAATGAATAAAAAAA TTTTAGAA TTATATTC TTCTAAAA AATTTAATCCATTTA TERM 15 8772 - 8789 + G 71 -5.7 -4.63218 | overlap 8768 8767 8766 ATCATGTATTACCAT TACTAAT GGGT ATTAGTA TTTTATTAACACAAA yidC 8129 - 8986 + | hypothetical protein TERM 16 8987 - 8997 + F 85 -2.6 -6.71862 | opp_overlap 8983 8982 8987, overlap 8983 AAAAAAAATACTTAA TTTT ATT AAAA TTTTTTTTTTATTTT TERM 17 9544 - 9527 - g 73 -4.3 -5.40072 | opp_overlap 9527 CTTTTTCTAAAAAAA TAAATAA AATT TTATTTA ATTTAAAAGATATAT thdF 9061 - 10425 + | GTP-binding protein TERM 18 10456 - 10444 - f 74 -3.5 -5.86061 | TGGTATTAAAAAAAA TATTT AAA AAATA TATAGATTTTGCCCG groES 10754 - 11047 + | hypothetical protein TERM 19 11427 - 11417 - g 73 -6.8 -4.15508 | AATGAAGGTTTAAAA GCAG TAG CTGC TGGAATGAATCCTAT TERM 20 12048 - 12035 - g 70 -5.3 -4.88067 | opp_overlap 12023 12035 ATGGATTTAGAAAAA TCTTC TTTA GAAGA TTTAGGGCAAGCTAA groEL 11102 - 12754 + | chaperonin GroEL efp 12893 - 13465 + | hypothetical protein dnaC 14221 - 13484 - | DNA replication protein DnaC TERM 21 14327 - 14362 + r 83 -8 -4.62471 | opp_overlap 14331, overlap 14319 14331 GTTTTATTATTTATT TAAATATATTTATTTA TCTT TAAATAAATATATATA TTTTTAAAAATTAAA TERM 22 14358 - 14331 - R 80 -8.8 -3.67296 | opp_overlap 14319 14327 14331 TATTATTTATTTAAA TATATTTATTTA TCTT TAAATAAATATA TATATTTTTAAAAAT TERM 23 14331 - 14358 + r 77 -8.8 -3.54256 | opp_overlap 14331, overlap 14319 14327 TATTATTTATTTAAA TATATTTATTTA TCTT TAAATAAATATA TATATTTTTAAAAAT yhhF 14992 - 14426 - | YhhF TERM 24 15850 - 15836 - g 70 -4.2 -5.17353 | opp_overlap 15837, overlap 15837 AGAGTTATTAAAAAA TGCTGT TCT ACAGCT TTTTATAAAACTTAT TERM 25 15849 - 15837 - g 72 -7.7 -3.69327 | opp_overlap 15837, overlap 15836 GAGTTATTAAAAAAT GCTGT TCT ACAGC TTTTTATAAAACTTA TERM 26 15837 - 15849 + G 84 -7.7 -4.8543 | opp_overlap 15836 15837 GAGTTATTAAAAAAT GCTGT TCT ACAGC TTTTTATAAAACTTA ftsY 15068 - 16108 + | hypothetical protein TERM 27 16124 - 16138 + F 100 -5.8 -6.59152 | opp_overlap 16124 AAAATGATATAATTA TTATCT TTT AGATAA TTTTTTTTTTATTAA TERM 28 16840 - 16819 - g 70 -7.5 -3.56361 | overlap 16814 AGATAAAAAATCTAA TTTTTCTAT AAAA ATAGAAAAA GATAATTGGGCATTA rpoH 16181 - 17056 + | RNA polymerase sigma-32 factor TERM 29 19488 - 19467 - g 79 -4.5 -5.5943 | overlap 19470 AAATTACTAAAAAAA GCATTGAAA TATA TTTCAATTC AACAATTATGGGTAA metE 17328 - 19610 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase rpoC 24056 - 19824 - | RNA polymerase, b' subunit TERM 30 22046 - 22058 + g 71 -6.3 -4.31166 | TAGAAGTTACTAGTC CAGTT TGA AACTG TTTATCTATTTCTAA rpoB 28169 - 24138 - | RNA polymerase, b subunit rplL 28764 - 28396 - | 50S ribosomal protein L12 TERM 31 28800 - 28818 + r 70 -4 -5.70829 | TTAATAGTATATAGA TAATGTAA ATT TTATATTA TTTTTTTGTAATATT rplJ 29301 - 28816 - | 50S ribosomal protein L10 TERM 32 29321 - 29347 + r 90 -9.8 -4.02334 | opp_overlap 29318 TTATCCTAATTATGA TTATTTTTTATA ATT TATAAAAAATAA TTTATACTATGAATG rplA 30153 - 29473 - | 50S ribosomal protein L1 TERM 33 29762 - 29784 + g 74 -7 -4.09243 | overlap 29765 TTAGGCATAATTCCT TTTGGTCCTA ATA TAGGGCCTAA TTTTCCAACAATATG TERM 34 29765 - 29781 + g 73 -8.7 -3.08211 | overlap 29762 GGCATAATTCCTTTT GGTCCTA ATA TAGGGCC TAATTTTCCAACAAT TERM 35 30094 - 30104 + g 82 -2.6 -6.32976 | TTGAATTGCTTCTTT TATA TTG TATA TTTTTTTATTTTTTT rplK 30590 - 30156 - | 50S ribosomal protein L11 TERM 36 30560 - 30574 + g 71 -2.2 -5.84381 | overlap 30563 ATGGTATTTGTAATT TTATAT ATG ATGTAA TTTTTTTATTAATCA nusG 31183 - 30641 - | hypothetical protein secE 31572 - 31186 - | hypothetical protein TERM 37 31691 - 31701 + H 100 -4 -6.82077 | opp_overlap 31691 TTTTAAATTAAAATA TCAA AAA TTGA TTTTTTTTTTTTGAT TERM 38 31895 - 31877 - H 77 -6.2 -5.06411 | ATAAAATAAAATAAA TATAATTT TAA AAATTATA TAGCGGTCAGCGGGA TERM 39 32268 - 32313 + H 71 -8.1 -3.42231 | opp_overlap 32262 32260 32270 32274 32277 32297, overlap 32262 32274 32277 32294 CATATATTATTATTA TATAAATAATAGTTAAATTTT AAAT AAAATTTAAATATTATTTAAA TTCCTAATTTTATTT TERM 40 32311 - 32270 - H 84 -10.7 -2.84192 | opp_overlap 32262 32268 32274 32277 32294, overlap 32262 32260 32274 32277 32297 TATATTATTATTATA TAAATAATAGTTAAATTTT AAAT AAAATTTAAATATTATTTA AATTCCTAATTTTAT metF 32539 - 33420 + | 5,10-methylenetetrahydrofolate reductase TERM 41 33453 - 33421 - f 93 -12.5 -3.41051 | opp_overlap 33421 33431, overlap 33431 TTAGGTTTAGTATAA TTTTTAAAAATATAT AAT ATATATTTTTAAAAA TTAATAAAAATTAAA TERM 42 33421 - 33453 + F 91 -12.5 -3.16742 | opp_overlap 33421 33431, overlap 33431 TTAGGTTTAGTATAA TTTTTAAAAATATAT AAT ATATATTTTTAAAAA TTAATAAAAATTAAA TERM 43 33480 - 33464 - f 75 -5.3 -5.30199 | overlap 33454 AAAAATTAATAAAAA TTAAAAT AAT ATTTTAA AAAATTTCTTATTTT TERM 44 33926 - 33955 + G 73 -8.9 -2.69964 | opp_overlap 33932 33941, overlap 33929 33932 ATTACCAGATTTTTT TAATAATTTGATA AATA TATCAAATTGTTA TAGTGTAATTAAAAA TERM 45 34036 - 34014 - g 71 -8 -3.19289 | opp_overlap 34013 34026 34031, overlap 34009 34013 TTAAAATATATAAAT TTTTTAAAAA TGT TTTTTAAAAA GAAAATTATTCCTTT TERM 46 34217 - 34207 - g 72 -2.6 -5.77856 | AACAAATTAAAAAAA TTTA TTC TAAA GAAATAGATTATTTT argB 33603 - 34397 + | hypothetical protein argG 34426 - 35625 + | hypothetical protein TERM 47 35877 - 35864 - g 79 -2.5 -6.10489 | opp_overlap 35873, overlap 35873 AATTTTAAAAAAAAA TAAAA ATAA TTTTA CTAAAATATTATCTT argH 35658 - 37040 + | hypothetical protein TERM 48 37137 - 37087 - T 70 -7.2 -3.81958 | opp_overlap 37069 37090 37091, overlap 37069 37081 37085 37089 37091 ATTTTTAAATAAATA TATATTTAATATCACGCGATAT ATTATTA ATATCGTGTGATATTAAAATTA TTAAATTTTGATAGA TERM 49 37090 - 37134 + T 93 -11.1 -3.82481 | opp_overlap 37081 37089 37087 37085 37091, overlap 37091 TTTAAATAAATATAT ATTTAATATCACGCGATAT ATTATTA ATATCGTGTGATATTAAAA TTATTAAATTTTGAT TERM 50 37133 - 37091 - T 91 -12.4 -3.30662 | opp_overlap 37091 37090, overlap 37081 37089 37087 37085 TTAAATAAATATATA TTTAATATCACGCGATAT ATTATTA ATATCGTGTGATATTAAA ATTATTAAATTTTGA TERM 51 37091 - 37133 + T 100 -14.6 -2.88404 | opp_overlap 37081 37089 37087 37085 37091, overlap 37090 TTAAATAAATATATA TTTAATATCACGCGATAT ATTATTA ATATCGTGTGATATTAAA ATTATTAAATTTTGA TERM 52 37182 - 37230 + T 100 -7.2 -6.43839 | opp_overlap 37181 37182, overlap 37173 37215 37218 TAAAAATAAAAATAT TTTTTGTGTTATACAAAAATTT TTAAT AAATTTTTGTATGAAAAAAAAA TTTTTTTTTTCATAT TERM 53 37215 - 37247 + T 79 -7.3 -4.65446 | opp_overlap 37181 37182, overlap 37182 37218 37246 ATTTTTAATAAATTT TTGTATGAAAAAAAA ATT TTTTTTTTCATATTA TTTTATATATATAAT TERM 54 37218 - 37244 + T 100 -11.2 -4.42325 | opp_overlap 37181 37182, overlap 37182 37215 TTTAATAAATTTTTG TATGAAAAAAAA ATT TTTTTTTTCATA TTATTTTATATATAT TERM 55 37246 - 37283 + T 70 -6 -4.64844 | opp_overlap 37248 37262 37266 37267 37280, overlap 37215 37249 TTTTTTTTTTCATAT TATTTTATATATATAA TATATT TTATATATATAATATA TTTTATATATATAAA TERM 56 37249 - 37298 + T 100 -9.9 -5.38497 | opp_overlap 37248 37262 37266 37267 37280 37295, overlap 37246 37295 TTTTTTTCATATTAT TTTATATATATAATATATTTTAT ATAT ATAATATATTTTATATATATAAA TTTTTTAGTTTAAAT rpoD 39297 - 37456 - | RNA polymerase major s factor TERM 57 38377 - 38397 + g 79 -2.7 -6.13 | ATAATTTTTTTTGTG TTTTTTAAA AAA TTTCAAAAA TTTTTTTTTAGGTAT TERM 58 38726 - 38736 + g 72 -2.6 -5.88565 | AATGATTTTTTTTTA TTAT TAT ATAA TTTTTTTGTTATAAC danG 41234 - 39462 - | DNA primase TERM 59 40752 - 40771 + g 81 -6.6 -4.82667 | TGATAATGCATATCC TAATGAAA AATT TTTCATTA TTTTTGATGTAATGC TERM 60 40922 - 40951 + g 71 -7.3 -3.86031 | opp_overlap 40916 40929 ATTGAGAATTATATT GTATATATGGAAT TTTT ATTCCATGTAAAC TTGTTAATTCATTGA rpsU 41521 - 41306 - | 30S ribosomal protein S21 TERM 61 41565 - 41592 + H 77 -4.4 -5.84011 | opp_overlap 41565, overlap 41572 41580 41582 TATCTTTGAAAAACA TTTATATTAAAA TTTT TTTTAATAAAAA TTTTTATTTTTTATT TERM 62 42584 - 42567 - g 71 -2.1 -5.81622 | ATAAAATTAAAAAAA TTAATTT ATAA AAATCAA AGAAAATTATATTTT gcp 41712 - 42743 + | Gcp TERM 63 42820 - 42832 + F 74 -3.5 -5.89659 | opp_overlap 42806, overlap 42824 ATTTTTAAATATTTA TTTTT AAA AAAAA TTTTTATTTTTTTAT TERM 64 42824 - 42838 + F 80 -4.4 -6.01369 | opp_overlap 42806, overlap 42820 TTAAATATTTATTTT TAAAAA AAA TTTTTA TTTTTTTATTATTTA cca 42863 - 44107 + | tRNA CCA-pyrophosphorylase TERM 65 44497 - 44511 + F 100 -4.4 -6.82077 | opp_overlap 44496 44497, overlap 44504 TGATTCAAAAATTAT TTTTTT TTT AAAAAA TTTTTTTTTTTTAAT TERM 66 44668 - 44705 + F 74 -5.9 -5.16151 | opp_overlap 44695, overlap 44662 44690 44695 TGTCTTTTTTATTTT CAATTATTAAAAATATT ATTT ATTATATTTAATAATTG TTTTTATTAAATTTA TERM 67 45240 - 45228 - g 76 -3.4 -5.81032 | opp_overlap 45228 CAATTCCAAAAAAAA TTGC AGGAA GCAA TATTCCTAAAAAAAT TERM 68 45475 - 45459 - g 76 -3.8 -5.89921 | ATTATAATAAAAAAA TTGATA GTCAT TATCAA AGATTATTACAAATA lig 44744 - 46507 + | DNA ligase TERM 69 47258 - 47244 - g 73 -4.4 -5.27938 | opp_overlap 47245, overlap 47238 47245 ATGTCGAAATAAAAA TTTTTT TTT AAAAAA ATCTAATATTCCTTA TERM 70 47824 - 47854 + G 72 -2.8 -5.75342 | opp_overlap 47824, overlap 47824 AATTTAAAATATAAA TATTTTTTTTCTTA TTG TAAAAAAAATAATA TTTTTTTTGACAAGG gltX 46858 - 48282 + | GltX TERM 71 48425 - 48457 + F 100 -12.5 -5.30339 | opp_overlap 48422 48425 48450 48452, overlap 48450 48452 ATGTATTATAAATTA TTTTAATAATTATAA ATT TTATAATTATTAAAA TTTTTATATTTTAAT TERM 72 48457 - 48425 - f 91 -12.5 -3.0439 | opp_overlap 48425 48450 48452, overlap 48422 48450 48452 ATGTATTATAAATTA TTTTAATAATTATAA ATT TTATAATTATTAAAA TTTTTATATTTTAAT TERM 73 49499 - 49515 + G 86 -9.5 -4.20368 | opp_overlap 49498 49497 ATTATTTTATTAATT TCAGGAA GTG TTCCTGA TTTATCTTCAGATAA TERM 74 50207 - 50197 - g 91 -2.6 -6.82322 | AAATAAAAAAAAAAA TATT ATA AATA TACCTGTAAAAGATA TERM 75 50253 - 50241 - g 71 -3.5 -5.33465 | AAAAAAAAAAAATAA TTAAT GAT ATTAA TAATCAATTAAATAA fliF 48902 - 50371 + | hypothetical protein fliG 50368 - 51342 + | hypothetical protein TERM 76 51391 - 51380 - g 74 -3 -5.74122 | TACTATAGAAAAAAA TTCT TGGA AGAA ATGGAAACCTAAAAA fliH 51357 - 52046 + | hypothetical protein fliI 52052 - 53425 + | hypothetical protein TERM 77 53524 - 53508 - f 72 -3.1 -5.94597 | overlap 53519 TAATATTAAAAAAAA TACAAAT ATT ATTTATA GTTATAAAAAAAAAA TERM 78 53572 - 53548 - f 81 -3.8 -6.17033 | opp_overlap 53567, overlap 53561 AAAAAAAAGAAAAAA TTAAAAAAAA ATTTA TTTCTTTTAA AAAAATATTATAAAA TERM 79 53875 - 53895 + F 72 -4.2 -5.5353 | opp_overlap 53890, overlap 53890 TCAAATGTTTTTTGT TTTTTATT ATTGA AATAAAAA TTTTTTATTAATATA TERM 80 54800 - 54780 - f 71 -7.1 -4.28018 | opp_overlap 54767 54780 54790, overlap 54767 54799 AATATTTTAGTAAAA TATTTATAT TTT ATATAAATA TTTTTAATAATAAAA TERM 81 54780 - 54800 + F 76 -7.1 -4.77036 | opp_overlap 54767 54780 54799, overlap 54767 54790 AATATTTTAGTAAAA TATTTATAT TTT ATATAAATA TTTTTAATAATAAAA fliN 54847 - 55251 + | hypothetical protein TERM 82 55293 - 55329 + F 82 -9.9 -3.17391 | opp_overlap 55298 55303, overlap 55292 55289 55326 ATAATTAATTATGTA TATAATAAAATTTTATT TTT AATAAAATATTATTATA ATTATTTATTATATA fliP 55416 - 56150 + | flagellar biosynthesis protein FliP fliQ 56190 - 56456 + | hypothetical protein TERM 83 56473 - 56485 + G 71 -3.5 -5.47846 | opp_overlap 56473, overlap 56466 CATTATGATAAATAA TTTAT TCA ATAAA TTTTATTTTTTAATT TERM 84 56952 - 56966 + G 91 -4.4 -6.30182 | opp_overlap 56947, overlap 56954 56959 CATTAAATAATTTTA TTTTTT ATA AAAAAA TTTTTTTTTATATAG fliR 56462 - 57262 + | hypothetical protein TERM 85 57336 - 57373 + T 70 -6.6 -4.55004 | gap 1, opp_overlap 57339 57343, overlap 57339 57340 TTATTTTTATATATT TAATTTATTGGAGATCT TTTAT AGATCTCCAAT-AATAA TTTGTATTTTATATT TERM 86 57339 - 57372 + T 76 -9.2 -3.30562 | gap 1, opp_overlap 57339 57343, overlap 57336 57340 TTTTTATATATTTAA T-TTATTGGAGATCT TTTAT AGATCTCCAATAATA ATTTGTATTTTATAT TERM 87 57371 - 57339 - T 84 -10.8 -3.15999 | opp_overlap 57339 57336 57340, overlap 57343 TTTTTATATATTTAA TTTATTGGAGATCT TTTAT AGATCTCCAATAAT AATTTGTATTTTATA TERM 88 57340 - 57370 + T 100 -14.3 -3.19413 | opp_overlap 57339 57343, overlap 57339 57336 TTTTATATATTTAAT TTATTGGAGATCT TTTAT AGATCTCCAATAA TAATTTGTATTTTAT TERM 89 57367 - 57343 - T 86 -11.6 -2.56571 | opp_overlap 57340 57339 57336, overlap 57339 TATATATTTAATTTA TTGGAGATCT TTTAT AGATCTCCAA TAATAATTTGTATTT TERM 90 57381 - 57391 + T 79 -2.6 -6.38492 | AATAATAATTTGTAT TTTA TAT TAAA TTTTTTTTTCTTGAT rpmG 57551 - 57387 - | 50S ribosomal protein L33 rpmB 57784 - 57563 - | 50S ribosomal protein L28 ppa 58438 - 57899 - | hypothetical protein TERM 91 57989 - 58029 + g 90 -8 -4.94109 | ATTTATTTTTACCCA TTTATTTTTTTCTAAATT TTTGT AATTTTGAAAAAAATGAA TTATTTTTTCTTTTA TERM 92 58554 - 58526 - R 85 -9.2 -4.07687 | opp_overlap 58525 58532 ATTTGTTTTTCAAAA TCATAATTATAA TTAAT TTATAATTATGA ATAATTTAGAAAAAT TERM 93 58601 - 58569 - R 87 -8.1 -4.94222 | opp_overlap 58569 58571 58571 AATAATTTAGAAAAA TATTTTAATTTTAAA ATT TTTAAAAATAAAATA TATTCAGAATAATAA TERM 94 58735 - 58760 + r 74 -9.3 -3.05849 | opp_overlap 58734 58755, overlap 58734 58737 58744 58755 ATATAGTTAATTTAG TATTACTTTTT TTTA AAAAAGTAATA ATTTACTTTAATAAA TERM 95 59025 - 59048 + r 72 -2.6 -6.04953 | opp_overlap 59025 59020, overlap 59012 59037 ATTAGATATAGAAAA TTTATTTTAT AATG AAAAAATAAA TTTTTTTATTTATGT TERM 96 59609 - 59584 - R 76 -7.9 -4.07466 | opp_overlap 59584 59607, overlap 59587 ATTATAGAATAATAA TAATATATATA TGAA TATATATATTA TTTTTTTAAAAAAAG TERM 97 59584 - 59609 + r 100 -7.9 -5.40072 | opp_overlap 59584 59587, overlap 59607 ATTATAGAATAATAA TAATATATATA TGAA TATATATATTA TTTTTTTAAAAAAAG yraL 60785 - 59958 - | YraL TERM 98 60031 - 60047 + g 71 -5.9 -4.2717 | AATCTACATATTTTT GCAGTTA TTT TAATTGC TTTTGATAAACTCAT TERM 99 60649 - 60665 + g 73 -5.3 -5.09225 | opp_overlap 60659 TGATATGAAAACATT TTTTTTA TAA TAAAAAA TTTTTTCAATAAAAT TERM 100 61891 - 61904 + G 76 -6.7 -4.40358 | overlap 61888 AATAGTATTACTTTA CCATC TGGT GATGG TTTTATACGCTGCAT fabB 61084 - 62307 + | 3-oxoacyl-(acyl-carrier-protein) synthase I TERM 101 62342 - 62330 - f 70 -3.5 -5.58454 | TTTATATTAAAAAAA TTTTT TTT AAAAA TATAAATAGTTTTTA TERM 102 62394 - 62428 + F 85 -6.8 -5.28166 | opp_overlap 62381 62385 62396 62400, overlap 62381 62385 62395 62396 62400 ATTATATTTATAATA TATAAATTATTTTATT AAT AATAAAATAATTTAGG TTTTTATTGATTTTA TERM 103 62395 - 62427 + F 73 -8.1 -3.74459 | opp_overlap 62385 62396 62400, overlap 62385 62394 62396 62400 TTATATTTATAATAT ATAAATTATTTTATT AAT AATAAAATAATTTAG GTTTTTATTGATTTT TERM 104 62426 - 62396 - f 88 -11.6 -3.19659 | opp_overlap 62385 62396 62395 62394 62400, overlap 62385 62400 TATATTTATAATATA TAAATTATTTTATT AAT AATAAAATAATTTA GGTTTTTATTGATTT TERM 105 62396 - 62426 + F 88 -11.6 -2.82235 | opp_overlap 62385 62396 62400, overlap 62385 62395 62394 62400 TATATTTATAATATA TAAATTATTTTATT AAT AATAAAATAATTTA GGTTTTTATTGATTT TERM 106 62422 - 62400 - f 79 -8 -4.24786 | opp_overlap 62396 62395 62394 62400, overlap 62396 TTTATAATATATAAA TTATTTTATT AAT AATAAAATAA TTTAGGTTTTTATTG TERM 107 62400 - 62422 + F 76 -8 -4.05495 | opp_overlap 62400 62396, overlap 62396 62395 62394 TTTATAATATATAAA TTATTTTATT AAT AATAAAATAA TTTAGGTTTTTATTG TERM 108 63147 - 63126 - g 74 -3.2 -5.88471 | opp_overlap 63117 63129, overlap 63116 63129 TAGCATTAAAAAAAA TATTTTTT TATTAT AAAAAATA TGGTTATAAAACTAT talA 62504 - 63460 + | transaldolase B tktB 63507 - 65504 + | TktB TERM 109 66438 - 66415 - g 79 -7 -4.44461 | opp_overlap 66415 66408, overlap 66428 AAGAATTGTAGAAAA TTTATTAAAT AAAT ATTTAATAAA ATATTCTATTTTTTG dapE 65594 - 66724 + | succinyl-diaminopimelate desuccinylase TERM 110 66725 - 66739 + T 70 -7.2 -3.94933 | overlap 66723 AAGTTATTATTATGA TCTTCT TTT AGAAGA TATTTTTAGAATTGA TERM 111 66753 - 66797 + T 100 -9.8 -5.78622 | gap 1, opp_overlap 66751 66755 66768 66796, overlap 66755 GATATTTTTAGAATT GATATTTTCATGCAATGATAA ATTT TTATCATTGCAT-AAAATATA TTTTTTTTAAAATAA TERM 112 66795 - 66755 - T 90 -12.4 -2.59748 | gap 1, opp_overlap 66753 66755, overlap 66751 66768 TATTTTTAGAATTGA TATTTTCATGCAATGATAA ATTT TTATCATTGCAT-AAAATA TATTTTTTTTAAAAT TERM 113 66755 - 66795 + T 100 -12.4 -4.53853 | gap 1, opp_overlap 66755 66751 66768, overlap 66753 TATTTTTAGAATTGA TATTTTCATGCAATGATAA ATTT TTATCATTGCAT-AAAATA TATTTTTTTTAAAAT dapA 67771 - 66878 - | hypothetical protein TERM 114 67805 - 67832 + r 95 -6.6 -6.08563 | opp_overlap 67800 67805, overlap 67800 TAAGAATTAATTAAA TAATTTTATAAT TTAA ATTGTAAAATTA TTTTTTTTCTATATT TERM 115 67840 - 67854 + r 70 -5.8 -4.76191 | TAAAATTATTTTTTT TCTATA TTT TATAGA TTTATTTTAGTATAT aroC 69088 - 68027 - | chorismate synthase TERM 116 69383 - 69373 - g 75 -2.6 -5.90981 | TTATATGAAAAAAAA TAAT TTA ATTA ATTCAAATGAAGCAG yfcN 69362 - 69898 + | YfcN TERM 117 69975 - 69993 + F 73 -6.2 -4.74611 | opp_overlap 69975 69985, overlap 69971 69988 TTTCAATTTATTAGA TTTTTAAT TAT ATTAAAAA TTATTTTTTATAATC TERM 118 69998 - 70022 + F 70 -5.9 -4.66938 | opp_overlap 69985 69998 69997, overlap 69988 70001 TATATTAAAAATTAT TTTTTATAATC TAA GATTATAATAA TTTTGTATTAAAAAT hisG 70187 - 71086 + | ATP phosphoribosyltransferase hisD 71094 - 72389 + | hypothetical protein TERM 119 72376 - 72403 + F 77 -8.8 -3.49475 | opp_overlap 72376 72381 72393, overlap 72381 CAATAGTAACTAGAA TAAAATTTTTAT AAAA ATAAAAATTTTA TTATGTAAGAGTCAC TERM 120 72403 - 72376 - f 77 -8.8 -3.56558 | opp_overlap 72376 72381, overlap 72381 72393 CAATAGTAACTAGAA TAAAATTTTTAT AAAA ATAAAAATTTTA TTATGTAAGAGTCAC TERM 121 73262 - 73241 - g 100 -6.1 -6.04324 | opp_overlap 73234, overlap 73234 TTAAAAAATAAAAAA TTTTTAATT GATC AATTAAAAA AAATTTCATATATAA TERM 122 73323 - 73298 - g 83 -10.7 -3.1247 | opp_overlap 73303, overlap 73303 ATTTTTCATAGTGAA GCAAATTTTAT TCTT ATAAAATTTGC TGAATCTAAAACTAT hisC 72425 - 73486 + | hypothetical protein hisB 73488 - 74555 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 74556 - 75146 + | hypothetical protein hisA 75151 - 75888 + | hypothetical protein hisF 75870 - 76646 + | imidazole glycerol phosphate synthase subunit HisF TERM 123 77033 - 77021 - g 100 -6.3 -5.73978 | opp_overlap 77020 77021 ATTAGAAATAAAAAA GAGAA TTT TTCTC GTTCTTCTTATGTAT hisI 76640 - 77257 + | hypothetical protein gnsD 77322 - 78734 + | 6-phosphogluconate dehydrogenase, decarboxylating TERM 124 78811 - 78822 + F 79 -3 -6.23317 | overlap 78806 TTAATATATTTTTAT TGTA TAAA TACA TTTTTTTATTTTTAT TERM 125 79502 - 79528 + G 71 -5.4 -4.59853 | opp_overlap 79519 CAATCAAATCATCTT TTTTTTAAATTA TCA TATTTTAAAAAA TTTTTAAAAACTTGG TERM 126 80117 - 80136 + G 82 -5.2 -5.69023 | opp_overlap 80119, overlap 80124 80126 TTAGCATCCCGAAGT TATTTTTT TCTA AAAAAATA TTTTTTTAGTATTTT TERM 127 80213 - 80241 + G 74 -7 -3.9941 | opp_overlap 80218 80219 TCTATTAAAGATATT GAAAATTTTTTT GAAAA AAGAAAATTTTC TTTAATTATACAAAA TERM 128 80283 - 80259 - g 71 -3.7 -5.42131 | TAATTATACAAAAAA TTAGATTTTTA TCT CAAAAAGCTAA TAAATATTTTAATGA metG 78929 - 80572 + | hypothetical protein mesJ 81880 - 80573 - | hypothetical protein TERM 129 80978 - 80997 + g 100 -6.6 -5.80364 | TTTGTATCTTCTTAT TTCTTTTT TTTG AAAAAGAA TTTTTTTATTAAAAT TERM 130 81192 - 81220 + g 71 -3.3 -5.54894 | TTTTTAAGAAACTTT GATAAAAAATAAT TTA ATATTTTTTTATC TTTTTTTAATAAATT TERM 131 81287 - 81320 + g 72 -7.9 -3.43826 | gap 1, opp_overlap 81295, overlap 81284 81285 81295 TTTAAGATATATTTT TGATA-AAATTTTATT TCT AATAAAATTTCTATCA TATTGATTATTTTTA TERM 132 82196 - 82183 - g 79 -2.5 -6.23545 | opp_overlap 82184, overlap 82174 82184 TTTAAATAAAAAAAA TTTTT TTTC AAAAA TTTTTAATCAATTTG TERM 133 83002 - 82992 - g 79 -2.6 -6.19443 | opp_overlap 82992 TAGATGAAAAAAAAA TAAA TAT TTTA TTTCATGATAACAAT tyrS 82139 - 83425 + | hypothetical protein sufA 83822 - 83466 - | FeS assembly scaffold protein TERM 134 83628 - 83592 - G 79 -9.9 -2.95877 | opp_overlap 83621 83625, overlap 83587 83585 TAAAGGAATATCACA TTTAGAAATAAAAAA TTTTATG TTTTTTATTTCTAAA AGAAATTCATTTTTT TERM 135 84174 - 84194 + H 79 -2.7 -6.41805 | ATAAATTAGAAATTT TTTATTTTA AAT TAAATTAAA TTTTTTTTTTAATAC TERM 136 85085 - 85072 - g 72 -2.5 -5.8187 | opp_overlap 85072, overlap 85077 GATGTAATAAAAAAA TTAAA GATT TTTAA TCTTCCAGAACATTT aroH 84313 - 85365 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 137 85410 - 85435 + F 79 -7.9 -4.24422 | opp_overlap 85390 85409 85406 85402 85410 TATATAATAAATAAT TTTATAAAAAA AATA TTTTTTATAAA TTTCATTTATTATAA TERM 138 85975 - 85985 + G 79 -2.6 -6.15828 | opp_overlap 85975 TTTATCAAATTGAAA TTTT AAA AAAA TTTTTTTTTGATACA TERM 139 87193 - 87183 - g 75 -2.6 -6.08563 | opp_overlap 87183 AATATAGAAAAAAAA TTTT TAA AAAA TAATATTCGTTTTAT thrS 85506 - 87434 + | hypothetical protein infC 87438 - 87974 + | hypothetical protein rpmI 88036 - 88233 + | 50S ribosomal protein L35 rplT 88277 - 88636 + | 50S ribosomal protein L20 TERM 140 88773 - 88786 + G 70 -3.9 -5.186 | overlap 88785 AAAAGAAATATTCAT TGTTT TTAA AAACA TTTTTGTCTCTTTTA pheS 88747 - 89748 + | hypothetical protein TERM 141 89941 - 89929 - g 71 -3.5 -5.46706 | opp_overlap 89931, overlap 89931 89940 ATTTCAAAAGAAAAA TATTT TTT AAATA AAAAATTTTTAATAT TERM 142 90985 - 90966 - g 79 -5.2 -5.5074 | opp_overlap 90956 90966 90964, overlap 90981 TAATTTAATAAAAAA TTTTATTA TTAC TAATAAAA TATTTTTTACTATTA pheT 89764 - 92154 + | hypothetical protein TERM 143 92333 - 92313 - g 75 -8.5 -3.5393 | ATCAGGTTTTGGAAA TTTTTATCT ACG AGATAAAAA ACAAAGACCAGGTAG himA 92161 - 92475 + | hypothetical protein glyS 94823 - 92883 - | hypothetical protein TERM 144 93096 - 93106 + g 79 -2.6 -6.19443 | TATAATAGATTTTAT TAAT ATA ATTA TTTTTTTTTCATATA TERM 145 94224 - 94237 + g 75 -2.5 -5.94214 | TTCTTTTAACAAATT TTTAT TTAT ATAAA TTTTTTTATTATGTT TERM 146 94320 - 94334 + g 82 -4.4 -5.80248 | overlap 94328 ATCTAATATAATTTT TTTTTT CTT AAAAAA TTTTTTTGTATATTG glyQ 95708 - 94827 - | glycyl-tRNA synthetase subunit alpha TERM 147 95331 - 95343 + g 71 -6.3 -4.16251 | opp_overlap 95326 TCCTAAACCAGAAGC TCCTA TAG TAGGA TTTTCCCAATTGTCT nfo 95902 - 96774 + | hypothetical protein TERM 148 97074 - 97058 - g 77 -6.7 -4.62471 | TTTAATTTGCAAAAA GAAAAAA ATT TTTTTTC AAATAATTTTTTAAT TERM 149 97101 - 97081 - g 71 -7.1 -3.90744 | TTTTTTTTCAAATAA TTTTTTAAT TAA ATTAAAAAA TAAAAGTTTTTTTTC rplY 96893 - 97189 + | 50S ribosomal protein L25 TERM 150 97225 - 97200 - f 70 -7.9 -3.31779 | opp_overlap 97173 97190 97196 97200 97205, overlap 97190 97196 97205 AATAATTTAAATATA TAAAATATATA TAAA TATATATTTTA ATAATTTTTTTAAAA TERM 151 98246 - 98256 + G 77 -5.4 -5.12707 | opp_overlap 98246, overlap 98235 TTTCCTACTCCTAAA GTAG ATT CTAC TTTTTTACGATTTAC ksgA 97688 - 98515 + | hypothetical protein carB 101855 - 98637 - | hypothetical protein TERM 152 99735 - 99753 + g 70 -7.6 -3.44529 | TATATAGTTTGATTT TATTAAAG CTT CTTTAATA TTAGTTGCTATATCA TERM 153 101136 - 101148 + g 71 -6.3 -4.32482 | TCCAGTATGTATTCC CATAG GAT CTATG TTTTCAATTGTACAT TERM 154 101624 - 101638 + g 70 -4.4 -5.1244 | GTTTTTCTTTTTTAA TAATTT TTA AAATTA TTTTTGTATTAATAG carA 102964 - 101834 - | hypothetical protein dapB 103868 - 103047 - | hypothetical protein TERM 155 103580 - 103598 + g 90 -7.6 -5.18715 | CTAATACTATTTTTT TATTGTTT TTT AAACAATA TTTTATTATTTTTAT TERM 156 103975 - 103941 - R 84 -11.2 -2.55 | opp_overlap 103948, overlap 103948 TAATATTTTAAGTTA TTATAAATATAATACA AAT TATATTATATTTATAA AAAAAAAATTATATA ileS 106844 - 104019 - | hypothetical protein TERM 157 104359 - 104376 + g 82 -7.1 -4.93079 | AATTTATTTTTTTTT TCTGTTT CAAT AAACAGA TTTATTTCTTTTCTT TERM 158 104383 - 104401 + g 76 -4.6 -5.40072 | ATAAACAGATTTATT TCTTTTCT TAT AGCAAAGA TTTTTTTCCAAAAAA TERM 159 104475 - 104489 + g 82 -2.9 -6.17268 | ATACCATTGAGTCAT GAAAA TTGAT TTTTC TTTTTTTTCTTGTAA TERM 160 105988 - 106000 + g 83 -3.5 -6.15536 | overlap 105995 CATTTTTTTATATTG TTTTT TTT AAAAA TTTTTTTTGTTAATT TERM 161 106162 - 106179 + g 70 -4.3 -5.21709 | opp_overlap 106165 106166 AAAATTTTTTTATTA TAATTTT TAAA AAAATTA TTTTTTAATATAGAA TERM 162 106716 - 106737 + g 70 -3.9 -5.21683 | opp_overlap 106725 ATTTTTTTTTTTGTT TTTATGTAA TTTA TTATATAAA TTTATTTTTTTCCAT rpsT 107181 - 107441 + | 30S ribosomal protein S20 dnaJ 108684 - 107518 - | hypothetical protein TERM 163 108116 - 108128 + g 71 -6.3 -4.16016 | GTCCCAGTACCTCTA CATGT AGA ACATG TTTGTTGCACACTAA TERM 164 108744 - 108717 - R 70 -7.9 -3.3197 | gap 1, opp_overlap 108720, overlap 108719 108720 ATATTATGCGTATAA TATGGGTGTAGA TAATT TCTACACCC-TA TGTATTACATAAAAG TERM 165 108743 - 108719 - R 72 -8.6 -3.22653 | opp_overlap 108720, overlap 108717 108720 ATTATGCGTATAATA TGGGTGTAGA TAATT TCTACACCCT ATGTATTACATAAAA TERM 166 108742 - 108720 - R 90 -12.1 -2.53271 | opp_overlap 108720, overlap 108719 108717 TTATGCGTATAATAT GGGTGTAGA TAATT TCTACACCC TATGTATTACATAAA TERM 167 108720 - 108742 + r 91 -12.1 -3.11072 | opp_overlap 108719 108717 108720 TTATGCGTATAATAT GGGTGTAGA TAATT TCTACACCC TATGTATTACATAAA TERM 168 108807 - 108820 + r 72 -2.5 -5.98675 | opp_overlap 108798 108807, overlap 108798 108807 TAAATATTTTTAATA TAAAA ATTA TTTTA TTTTTTATTTTTATC dnaK 110734 - 108818 - | hypothetical protein TERM 169 110850 - 110832 - H 95 -7.6 -5.75342 | TTTTTTGAAAAAAAA TTATCTAT AAA ATAGATAA TACTAATTAAATGGG TERM 170 110980 - 110964 - H 78 -5.3 -5.40072 | TTTTTTGGAAAAAAA TTAATTA GTT TAATTAA AAATATCACTTTTTT TERM 171 111046 - 111096 + H 85 -9.6 -3.97108 | opp_overlap 111052 111086, overlap 111046 111052 111086 TAATCAAATATTATT TATATATTATATTTTTTTAATTAA TTT TTAATTAAATGAATATAATTTATA TTATATTTTAAGCTT TERM 172 111052 - 111090 + H 84 -8.6 -4.3821 | opp_overlap 111052 111086, overlap 111046 111046 111086 AATATTATTTATATA TTATATTTTTTTAATTAA TTT TTAATTAAATGAATATAA TTTATATTATATTTT nuoA 111122 - 111493 + | NADH dehydrogenase I chain A TERM 173 111492 - 111468 - f 90 -4.5 -6.47228 | opp_overlap 111487 111487 111488, overlap 111491 TAATTAAAAAAAAAA TATTTAAAAAA AAT TTGTTTAAATA AATAATTATTTATTT nuoB 111618 - 112295 + | NADH dehydrogenase subunit B TERM 174 113945 - 113921 - g 71 -2.9 -5.5319 | opp_overlap 113924 CAAAAAAAAAATAAA TCTTTATTTCA TAT TGAAAGAATGA TTACACATTTTTTGC nuoCD 112466 - 114202 + | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 175 114543 - 114528 - g 83 -3.4 -6.17184 | opp_overlap 114528 114536, overlap 114536 AGTATTAAAAAAAAA TTAAAA TATA TTTTAA ATATTTCTCCAGGAG nuoE 114234 - 114704 + | NADH dehydrogenase I chain E TERM 176 114970 - 114960 - g 75 -4 -5.69793 | opp_overlap 114960 ATATTAAAGAAAAAA TAAG ATA CTTA ATTTGTAATGCGGAT nuoF 114701 - 116017 + | NADH dehydrogenase I chain F TERM 177 116026 - 116002 - f 72 -5.9 -4.77795 | TAAAAAAAATATAAA TATTGTTTCTT TAT AAGAAATAATA AAAATATATATTTTA TERM 178 116240 - 116252 + G 78 -9.1 -3.56643 | ATGTACCTTTTTTTT GCTGG CAC CCAGC TTTAGGAAGTATAGG nuoG 116140 - 118878 + | NADH dehydrogenase I chain G TERM 179 119689 - 119699 + G 79 -2.6 -6.12458 | TTTTTTGGTTCTTAT TAAA AAC TTTA TTTTTTATTTTTTTA nuoH 118905 - 119843 + | NADH dehydrogenase I chain H nuoI 119859 - 120404 + | NADH dehydrogenase I chain I TERM 180 120670 - 120689 + G 93 -5.2 -6.4275 | overlap 120683 TTTAGTAGGAATTTT TTTTTTAA TAAT TTAAAAAA TTTTTTTTATTTTTC TERM 181 120683 - 120698 + G 71 -3.4 -5.35365 | overlap 120670 TTTTTTTTAATAATT TAAAAA ATTT TTTTTA TTTTTCTTCTCTTTT nuoJ 120421 - 120906 + | NADH dehydrogenase I chain J nuoK 120942 - 121244 + | NADH dehydrogenase I chain K TERM 182 121849 - 121878 + G 70 -7.5 -3.46138 | opp_overlap 121849 121863 TTTTGTATTAAAATA TTATTTAAAAGAA ATTA TTTTTTTAAATAA TTATACTAATGATTT TERM 183 122055 - 122065 + G 72 -2.6 -5.8187 | ATTTAATTATTCGTG TAAA TTT TTTA TTTTTTTCTTGCATA TERM 184 122081 - 122099 + G 70 -7.6 -3.42996 | opp_overlap 122085 122089, overlap 122085 TTTTTTTCTTGCATA GAAATAAT GAA ATTATTTC TTATAATAGGTAGTA TERM 185 122219 - 122241 + G 71 -2 -5.73563 | opp_overlap 122223, overlap 122222 122223 ATGTTATTAGCATTA GGAACAAAAA ATA TTTTTGGTGC TTTTTTTCATTTAAT TERM 186 122589 - 122613 + G 79 -4.5 -5.56573 | opp_overlap 122592, overlap 122590 AAAAAAAATATTTAT ATATAAAAAAA AAT TTTTTTTATAA TTTTTCTTTATTTGT TERM 187 122590 - 122612 + G 76 -8 -3.90284 | opp_overlap 122592, overlap 122589 AAAAAAATATTTATA TATAAAAAAA AAT TTTTTTTATA ATTTTTCTTTATTTG TERM 188 122982 - 122944 - g 73 -4.2 -5.42164 | opp_overlap 122943 122944 122944 122946, overlap 122938 122957 122962 122974 TATAAATAATAAAAA TTTTTTTTATATAGAAAA TTT CTTTTTAAATAAAAAAAA ATTTTTTAAAAAAAA TERM 189 122998 - 122984 - g 91 -4.4 -6.4753 | opp_overlap 122946 122944, overlap 122957 122974 TTAAATAAAAAAAAA TTTTTT AAA AAAAAA ATATTTAAAATTAAT TERM 190 123027 - 123047 + G 76 -3.4 -5.88476 | overlap 123019 ATATTGTTGATATTG TATATCAT ATTAG ATGGTATA TTTTTTGTTTATTTT nuoL 121241 - 123106 + | NADH dehydrogenase I chain L nuoM 123412 - 124650 + | NADH dehydrogenase I chain M TERM 191 125210 - 125225 + G 72 -2.6 -5.73563 | TATATTTTGTTTCTG GAAGAT TATC ATTTTC TTTTTTTCCTTTAAT TERM 192 125642 - 125667 + G 82 -7.9 -4.69487 | opp_overlap 125646, overlap 125632 125639 125646 ATTCATTTGTTTTTT TAAATAAATTA TTTA TAATTTATTTA TTTATTTATATATTT TERM 193 125954 - 125902 - g 71 -2.3 -5.86332 | opp_overlap 125899 125902, overlap 125912 125915 TTAATTCAAAAAAAA TTTTTTATAACAACTTTATTAATTA TGT TAAGTAATATAGTTGGTATGCAAAA TTATTTATATATTAT nuoN 124666 - 126111 + | NADH dehydrogenase I chain N TERM 194 126141 - 126175 + T 83 -9.7 -3.76413 | gap 1, opp_overlap 126149, overlap 126138 126149 TTAAAATTATCTTTA TAATATAATGTTGGAA TATT TTCCAACATT-TATTA TTTAACATTTTGAAA TERM 195 126168 - 126149 - T 83 -9.4 -3.75378 | opp_overlap 126141 126149 ATCTTTATAATATAA TGTTGGAA TATT TTCCAACA TTTATTATTTAACAT TERM 196 126149 - 126168 + T 93 -9.4 -4.57581 | opp_overlap 126149, overlap 126141 ATCTTTATAATATAA TGTTGGAA TATT TTCCAACA TTTATTATTTAACAT prsA 127152 - 126199 - | hypothetical protein prfA 127420 - 128493 + | hypothetical protein TERM 197 128671 - 128661 - g 72 -2.6 -5.89659 | opp_overlap 128661 AGAAAAAAATAAAAA TAAA ATA TTTA TTAATTTTAAATAAT hemK 128516 - 129349 + | hypothetical protein ychA 129388 - 130197 + | YchA TERM 198 130507 - 130495 - g 71 -3.5 -5.38047 | opp_overlap 130495 GATTCATATAAAAAA TTAAT ATT ATTAA TTTGTGATCTTTTGT TERM 199 130635 - 130625 - g 72 -2.6 -5.84381 | overlap 130617 130607 TTATTAATAAAAAAA TTTT ATT AAAA ATTAAAAAATCAGCT ackA 130297 - 131517 + | AckA pta 131608 - 132594 + | hypothetical protein TERM 200 132635 - 132603 - T 79 -9.5 -3.21064 | opp_overlap 132590 132605 132632, overlap 132601 132599 132605 132627 132628 TTTATAAGTAATACA TATATTTACTTTTAT AAT ATAAAAGTAAATATT TTTTAAAAATATTTA TERM 201 132605 - 132633 + T 100 -12.1 -5.04987 | opp_overlap 132603 132601 132599 132605 132627 132628, overlap 132590 132632 TATAAGTAATACATA TATTTACTTTTAT AAT ATAAAAGTAAATA TTTTTTAAAAATATT TERM 202 132633 - 132605 - T 91 -12.1 -3.16218 | opp_overlap 132590 132605 132632, overlap 132603 132601 132599 132627 132628 TATAAGTAATACATA TATTTACTTTTAT AAT ATAAAAGTAAATA TTTTTTAAAAATATT TERM 203 132650 - 132628 - T 71 -8 -3.43486 | opp_overlap 132605 132632 132636, overlap 132605 132603 132601 132599 132627 TTTATAATATAAAAG TAAATATTTT TTA AAAATATTTA AAATTCATAAAATTT gyrA 135184 - 132701 - | DNA gyrase, A subunit TERM 204 133688 - 133705 + g 100 -7.1 -6.67286 | ACTAATTATTTTTGT TTTTCTG GTAT CAGAAAA TTTTTTTTTTATTTC TERM 205 133896 - 133910 + g 85 -4.4 -6.09133 | opp_overlap 133896, overlap 133883 TGTTTATTACTAAAA TAAAAA TAT TTTTTA TTTTTTTTTGAACTA TERM 206 134126 - 134136 + g 78 -4 -5.86332 | opp_overlap 134126, overlap 134130 134134 TCTATGTTTTATAAA TTCT TTT AGAA TTTTTTTTAAATTCA TERM 207 135306 - 135341 + r 78 -5.8 -5.28826 | gap 1, opp_overlap 135296 135314, overlap 135296 135308 TTAAAGTTTTTATTT TATTAAAACCATTT-TA ATA TATAAATGGTTTTAAGA TTTTTTATAAAATTT TERM 208 135308 - 135339 + r 70 -8.4 -2.84317 | gap 1, opp_overlap 135296 135314, overlap 135296 135306 AAAGTTTTTATTTTA TTAAAACCATTT-TA ATA TATAAATGGTTTTAA GATTTTTTATAAAAT ahpC 135982 - 135380 - | hypothetical protein TERM 209 136696 - 136715 + G 73 -5.1 -5.07567 | TCTACACATCCATCA CCTTTAT CATGTT ATAAAGG TTTTTTCGGATGTAA TERM 210 136788 - 136777 - g 89 -4.4 -6.2845 | opp_overlap 136771 136777 AATCAGAAAAAAAAA CCAA TTAA TTGG TTTTTAGATTTATTT ung 136126 - 136809 + | Ung grpE 137358 - 136846 - | hypothetical protein TERM 211 137254 - 137276 + g 100 -7.2 -6.38655 | overlap 137271 TAAACGAATATTTTT TTTTTCTTTT ATT AAAAGAGAAA TTTTTTTTTCTATTT TERM 212 138061 - 138042 - H 72 -5.2 -5.01497 | opp_overlap 138034 138054 138056, overlap 138036 138056 ATTATTATATAAAAA TTTATATT TTCA AATATAAA TAAAAAAAATTTTTT TERM 213 138056 - 138083 + H 80 -8.8 -3.64821 | opp_overlap 138042 138056 138062, overlap 138054 138062 ATTTATATTTTCAAA TATAAATAAAAA AAAT TTTTTATTTATA TCTTTAATATTTTTA TERM 214 138083 - 138056 - H 80 -8.8 -3.5944 | opp_overlap 138056 138054 138062, overlap 138042 138062 ATTTATATTTTCAAA TATAAATAAAAA AAAT TTTTTATTTATA TCTTTAATATTTTTA ydhD 138114 - 138425 + | YdhD rnt 139136 - 138471 - | ribonuclease T TERM 215 139464 - 139474 + H 72 -2.6 -6.12458 | opp_overlap 139458 139464 TTTAATAAGTAAAAA TAAT GAA ATTA TTTTTTATTTTTTTA pth 139571 - 140149 + | hypothetical protein ychF 140205 - 141248 + | GTP-binding protein TERM 216 141284 - 141315 + T 77 -9.6 -3.06708 | opp_overlap 141268 141284 141283 AAAATTTTTTATAAT TTTAGAGAGGAAAT AATA AATTCCTCTCTGAA TATATATATGCATTA thrC 142620 - 141328 - | threonine synthase TERM 217 142374 - 142398 + g 76 -4.5 -5.47218 | CAATTATAGGTTTAG TAAATGAAAAA GCT TTTTTTATTTG TTTTTTTAAGTCAAC thrB 143554 - 142607 - | homoserine kinase thrA 146036 - 143574 - | hypothetical protein TERM 218 143864 - 143880 + g 82 -3.1 -6.12458 | opp_overlap 143850, overlap 143850 ATTCTTTAAGTTTTT TAAGAAA TAT TTTTTTA TTTTTTATTTTTTTA TERM 219 144208 - 144228 + g 79 -2.7 -6.21477 | overlap 144211 GCACCGACATGAGTT TCATAAAAA AAT TTTTTATTA TTTTTTTTTGCTGTT TERM 220 144211 - 144225 + g 70 -4.4 -5.11718 | overlap 144208 CCGACATGAGTTTCA TAAAAA AAT TTTTTA TTATTTTTTTTTGCT TERM 221 144419 - 144431 + g 83 -3.5 -6.10489 | overlap 144420 144426 TAATTTGGAGAATTT TTTTT AAT AAAAA TTTTTTTTTAGAATT TERM 222 144438 - 144452 + g 71 -2.2 -5.82388 | overlap 144420 144426 TAATAAAAATTTTTT TTTAGA ATT TTTAAA TTTTTTTTCCCATTT TERM 223 144999 - 145034 + g 100 -7.2 -6.02919 | overlap 145000 145028 ATATAATGGTATATT TTTCTTAAAAAAATAT GAAA GTATTTTTTTAAGAAC TTTTTTTATTTGTAA TERM 224 145000 - 145033 + g 93 -10.7 -4.19311 | overlap 144999 145028 TATAATGGTATATTT TTCTTAAAAAAATAT GAAA GTATTTTTTTAAGAA CTTTTTTTATTTGTA TERM 225 146052 - 146069 + r 71 -2.1 -6.06529 | AAAAATAATCTCATT TTTAAAT TATT GTTTAAA TTTTTTTTATATATC TERM 226 146441 - 146459 + r 77 -6.2 -5.09762 | opp_overlap 146441, overlap 146450 ATTTTTAGTAAATTA TTTTTTTT TTA AAAAAAAA TTTTGTTTATTCCAA pcnB 147661 - 146438 - | hypothetical protein TERM 227 147720 - 147744 + H 85 -8.9 -4.10188 | opp_overlap 147724, overlap 147724 147739 CTAATGCTATGTTGT TAAATAAAAAA ATT TTTTTTATTTA TTATTTATAAATATA TERM 228 148084 - 148051 - H 73 -6.5 -4.65838 | gap 1, opp_overlap 148050 148051 148079, overlap 148079 TATATATTTGAAAAA TTTTAATTT-TATAAA ATA TTTATATAAATTAAAA ATTAATTATAATGAT TERM 229 148238 - 148256 + H 70 -6.2 -4.42235 | opp_overlap 148238, overlap 148235 TTGTTATAATGAAAA TATTTATT TTT AATAAATA TTGTTTTTAAAGATT TERM 230 148256 - 148238 - H 70 -6.2 -4.48987 | opp_overlap 148238 148235 TTGTTATAATGAAAA TATTTATT TTT AATAAATA TTGTTTTTAAAGATT truA 148324 - 149133 + | hypothetical protein TERM 231 149985 - 149973 - g 79 -3.4 -6.0427 | ATTAGATAAAAAAAA TGCT TATTT AGCA GATATTACTTATGGT TERM 232 150406 - 150418 + G 76 -9.1 -3.29874 | overlap 150405 CATCATATTCTTTTA GCGCT TAA AGCGC ATTATTTATTTTTAA TERM 233 150648 - 150663 + G 73 -7.6 -3.89336 | TGGAATGACTGGAAC TGCTTC TACA GAAGCA TTTGAGTTTAATTCA secA 149470 - 152064 + | hypothetical protein TERM 234 152114 - 152134 + F 100 -7.1 -5.83211 | opp_overlap 152113, overlap 152100 152092 TTACAATAAAAATTG TATATTAAA AAT TTTAATATA TTTTTTATTTTAATA TERM 235 152403 - 152431 + F 85 -6.3 -5.48213 | opp_overlap 152409, overlap 152383 152409 TTTTTTTTAAGAATT TATAAATTTAATA TTT TATTAAATTTTTA TTTTTATTTTAAATA TERM 236 152409 - 152425 + F 85 -5.3 -5.77734 | opp_overlap 152409, overlap 152403 TTAAGAATTTATAAA TTTAATA TTT TATTAAA TTTTTATTTTTATTT TERM 237 153840 - 153826 - g 74 -5.8 -4.81752 | overlap 153831 153834 AAAAACATTTAAAAA TAGAAT TAG ATTCTA AATCCACAAAACAAT TERM 238 154192 - 154205 + G 84 -5.3 -5.88565 | AAAAATATATACCAG CTGAT AAAG ATCAG TTTTTTTATTATAAA aceE 152550 - 155210 + | pyruvate dehydrogenase subunit E1 aceF 155222 - 156475 + | hypothetical protein lpdA 156561 - 157988 + | LpdA TERM 239 158206 - 158186 - T 71 -8.3 -3.12606 | overlap 158181 GTATATAGTATTTAA GAGCAGG TCATTTT CCTGCTC TAAAACGAATTTAGT yadR 158627 - 158292 - | YadR TERM 240 158756 - 158776 + r 76 -7.1 -4.72486 | TTGTATATTTATGTA TATTAAATT AAT AATTTAATA TTTTTAAAATTTATG ftsZ 159976 - 158816 - | hypothetical protein ftsA 161292 - 160042 - | ATP-binding cell division protein TERM 241 160101 - 160117 + g 71 -3.1 -5.5943 | AAATTCCATTTTTCT TTTTTTT TTT AAAAGAA TTTTTTTGATAATTT TERM 242 160329 - 160355 + g 86 -9.8 -4.17987 | opp_overlap 160334 160348, overlap 160334 TGTTATTAATATTTT TAAAATTATATT GAG AATATAATTTTA TTATTTCGTTATTTA TERM 243 160334 - 160350 + g 73 -5.3 -5.03961 | opp_overlap 160334 160348, overlap 160329 TTAATATTTTTAAAA TTATATT GAG AATATAA TTTTATTATTTCGTT TERM 244 161579 - 161557 - R 85 -6.4 -5.54192 | opp_overlap 161547 161556 161557, overlap 161547 161559 161572 ATGAATGTAAAAAAA TTTGTTACAT TAA ATGTAACAGA ATTACTTTATGAATA TERM 245 161577 - 161559 - R 73 -9 -2.93448 | opp_overlap 161547 161557 161556, overlap 161547 161557 161572 GAATGTAAAAAAATT TGTTACAT TAA ATGTAACA GAATTACTTTATGAA yabC 162690 - 161767 - | S-adenosyl-dependent methyl transferase ilvH 163321 - 162839 - | hypothetical protein ilvI 165055 - 163331 - | IlvI TERM 246 164513 - 164530 + g 91 -2.1 -6.71862 | overlap 164515 AGATTTAATATTAAT TGTATTT TCCC AAATATA TTTTTTTTTTATTTT TERM 247 165167 - 165204 + r 81 -8.8 -3.84985 | opp_overlap 165134 165172 165174 165195, overlap 165172 165174 ATTTTTTTTTTTAAT TAAAACATTATCTGTA AAATTA TACAGATAATATTTTA TTATATATTTTAATA TERM 248 165199 - 165172 - R 70 -6.5 -4.4078 | opp_overlap 165172 165167 165174, overlap 165174 165195 TTTTTTTAATTAAAA CATTATCTGTA AAATTA TACAGATAATA TTTTATTATATATTT dapD 166041 - 165214 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 249 165996 - 166010 + g 82 -4.4 -5.72118 | AATTTTCTTTTTTTG TTTTTT TTA AAAAAA TTTTTTCTATTTTTT map 166973 - 166182 - | hypothetical protein TERM 250 166703 - 166717 + g 93 -5.8 -5.99154 | overlap 166710 TATTTACAATATCTC CATTTT TTA AAAATG TTTTTTTATTTGGTA TERM 251 166801 - 166811 + g 90 -3.2 -6.60575 | TTATATCCTAAACAT GCAG GAA TTGC TTTTTTTTTTTGAGT rpsB 167330 - 168055 + | 30S ribosomal protein S2 TERM 252 168645 - 168663 + G 73 -7.4 -3.89695 | opp_overlap 168636 AAATATTGCTATGCA TGTAGCAG CTG CTGCTCCA TTATATTTATCAGAA tsf 168112 - 168942 + | Tsf pyrH 169040 - 169759 + | hypothetical protein frr 169814 - 170371 + | hypothetical protein TERM 253 170414 - 170431 + F 72 -4.3 -5.5454 | opp_overlap 170414 170416 ACATTTTTCTAATTA TATTTAT TTTA ATAAATA TTTTTGTTTATTTAA TERM 254 170500 - 170518 + F 70 -6.2 -4.53303 | opp_overlap 170503, overlap 170490 170497 CATGTTTATTAATAT TAATAATT AGT AATTATTA TTTTATATAGGAATA TERM 255 170850 - 170869 + G 73 -5.2 -5.0916 | GTTAATGAAATTTTT TTTTTAAA TTAT TTTAAAAA TTTTTATATTAAAAA TERM 256 171522 - 171510 - g 79 -4.9 -5.47399 | overlap 171499 TCAATTTCAAAAAAA TTTTC TTT GAAAA CAAAAAGAAATACTT TERM 257 171663 - 171675 + G 71 -3.5 -5.43866 | opp_overlap 171663 171671 CCTTTGTTTGATAAT TTTTA TAA TAAAA TTTTTTTAAAAATTC yaeT 170544 - 172259 + | YaeT TERM 258 172478 - 172502 + G 90 -8.8 -4.86385 | opp_overlap 172490, overlap 172496 TGCAAATGATTTTTT TTTTTTAGGA CATTT TCCTAAAAAA TTTATTTTTCCAGGT TERM 259 172612 - 172630 + G 100 -10.4 -5.56568 | AAACGTATTGTTTAG CTAGTATC AAA GATACTAG TTTTTTTCGTCCTGT fabZ 172329 - 172778 + | (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase TERM 260 172845 - 172887 + F 74 -4.7 -5.46657 | gap 1, opp_overlap 172852 172863 TTAGATAAACATTTT TATAAAT-TTTTAAAAATAT TTTA ATATTTTAAAAATATTTATA TTTTTTATTAGGATA TERM 261 173105 - 173095 - g 74 -5.4 -4.76123 | AAACTAGGAATAAAA CCAA TTA TTGG AGTAGATATTATTGT TERM 262 173366 - 173356 - g 82 -2.6 -6.44931 | opp_overlap 173356 AATAATAAAAAAAAA TTAT TAT ATAA ATATCTTTTATTTTA TERM 263 173704 - 173687 - g 71 -7.1 -3.85474 | AAGCAATAATAAATA GTTTTGA AATA TCAAAAC GTTGCAATGTTATTA TERM 264 173826 - 173815 - g 76 -4.4 -5.43866 | opp_overlap 173815 GAAGGTTTAAAAAAA CGTT TAAA AACG ATTTATTTAAATAAA TERM 265 174661 - 174641 - g 73 -4.9 -5.08086 | opp_overlap 174660 ATAAAAAAGATAAAA TAAAAAAAA AGT TTTTTCTTA ATAAAATTAGTTTAA TERM 266 174894 - 174870 - g 75 -8.7 -3.44991 | opp_overlap 174869 174877, overlap 174868 174877 TATAAATCGTAAACA TGGAAAAGAAA AAA TTTCTTATCCA GATTCTAAATGGCAA TERM 267 176154 - 176141 - g 78 -3.9 -5.71638 | TAATAATTAAAAAAA TTCAA AATA TTGAA CAATTTCGTTTAAAA TERM 268 176363 - 176379 + G 73 -5.3 -5.00616 | opp_overlap 176373, overlap 176358 TTCCAGATAATGATT TTTTAAA TTA TTTAAAA TTTTTTAAAAAACAA dnaE 172906 - 176424 + | DNA polymerase III, a subunit proS 177710 - 176442 - | prolyl-tRNA synthetase TERM 269 177133 - 177149 + g 76 -5.3 -5.19916 | overlap 177145 TGAGCTTTAACTATT TTAAAAT TTA ATTTTAA TTTTTTAAATATTTT TERM 270 177180 - 177193 + g 78 -3.9 -5.86965 | TATATATATATTTTT CATAT TTTC ATATG TTTTTTTTAATGAAT TERM 271 177985 - 177997 + H 77 -3.5 -6.07374 | opp_overlap 177977 177994, overlap 177960 177994 TAAAAATTTTTTATT TTTAA AAA TTAAA TTTTTTATTTTTTCT TERM 272 178008 - 178043 + H 77 -6.6 -5.00027 | gap 1, opp_overlap 178031 TTAAATTTTTTATTT TTTCTTATATATTATTG TTA TAATA-TATATAAGAAA TTTTATATTTTTAAT TERM 273 178265 - 178284 + G 79 -5.2 -5.48106 | opp_overlap 178278, overlap 178278 TGTTTTTTTTTTCTT TTTTTTAT ATAA ATAAAAAA TTTATTTTTTTTTAT TERM 274 178278 - 178288 + G 87 -2.6 -6.60239 | opp_overlap 178278, overlap 178265 TTTTTTTTATATAAA TAAA AAA TTTA TTTTTTTTTATTTTT TERM 275 178501 - 178484 - g 73 -4.3 -5.44198 | opp_overlap 178484 178491, overlap 178478 178491 AAGAAATAACAAAAA TAAAATT TTTA AATTTTA ATTTAAATTTTTTAA TERM 276 178491 - 178508 + G 70 -4.3 -5.19916 | opp_overlap 178478 178484 178491, overlap 178484 178503 AACAAAAATAAAATT TTTAAAT TTTA ATTTAAA TTTTTTAAATATTTT TERM 277 179095 - 179105 + G 72 -2.6 -5.7946 | opp_overlap 179095 TCTATAGCAAAATAT TTAT ATA ATAA TTTTTTTATTGGAAA flhB 178132 - 179247 + | hypothetical protein TERM 278 181341 - 181320 - g 71 -6.7 -4.10925 | opp_overlap 181320 AGAGATTTCTGAAAA TCGTGTAAT TAAA ATTACACAA TTTATCGATAAGTAA flhA 179257 - 181356 + | FlhA argS 183083 - 181368 - | hypothetical protein TERM 279 181945 - 181964 + g 74 -2.2 -5.98675 | AATTTAATTGTGTCT CCATTT CTTGTTTT AAATGG TTTTTTGTTTTTATG TERM 280 182883 - 182899 + g 71 -2.3 -5.89827 | overlap 182884 ATATATTTTAGATTT ATTCATA TAG TATGAAA TTTTTTTTGCTAGTT TERM 281 185006 - 185023 + H 74 -9.1 -3.07291 | opp_overlap 185006 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT TERM 282 185617 - 185599 - g 75 -6.2 -4.66625 | opp_overlap 185599 ATATATATAAAGAAA TTTTTAAT TTT ATTAAAAA TTCTGAAATTATTGT dnaQ 185343 - 186038 + | DNA polymerase III, e subunit TERM 283 186171 - 186155 - f 70 -7.9 -3.21593 | CAGTTGGTTAGAATA CCGGCCT GTC ACGCCGG GGGGTCGCGGGTTCG TERM 284 186570 - 186558 - g 79 -2.7 -6.26417 | GATTACAAAAAAAAA TAGAT AAT ACCTA TAATTTTTTTTTAGA grpE1 186323 - 186913 + | GrpE1 smpB 186979 - 187448 + | SsrA-binding protein TERM 285 187734 - 187744 + G 71 -5.4 -4.67943 | ATTTTATATGTTACT CATG AAC CATG TTTTATGTGTTCCGA TERM 286 187805 - 187822 + G 71 -3.5 -5.35721 | overlap 187807 187811 TGTATATGGTTCTTA TAGTTTT AAAA AAAACTG TTTTTCTTATTATAT tadA 187494 - 187955 + | hypothetical protein acpS 188351 - 187971 - | hypothetical protein era 189219 - 188326 - | hypothetical protein TERM 287 189057 - 189045 - G 73 -4.9 -4.93365 | opp_overlap 189048 CTGGAGAATCAAAAA TTTCA AAT TGAAA CAATTTATATGTATA rnc 189905 - 189225 - | hypothetical protein lepB 190846 - 189989 - | hypothetical protein TERM 288 190429 - 190441 + g 74 -3.5 -5.60689 | TATGTTTGTTTTTTT TTATA ATA TATAA TTTTTTATTGTATGG TERM 289 190781 - 190838 + g 74 -8.5 -3.32704 | gap 1, opp_overlap 190780 190781 190796, overlap 190771 190787 190796 190805 190835 TTTTTTTATAAAATT TATAATTAATAAAAATATTATTATTAAT GAT AATAATAATAATATTTTTCTT-ATTATA ATTTTCATTATATTA TERM 290 190838 - 190781 - G 71 -8.5 -2.52946 | gap 1, opp_overlap 190771 190781 190787 190796 190805 190835, overlap 190780 190796 TTTTTTTATAAAATT TATAATTAATAAAAATATTATTATTAAT GAT AATAATAATAATATTTTTCTT-ATTATA ATTTTCATTATATTA TERM 291 190796 - 190824 + g 89 -6.3 -5.34365 | opp_overlap 190780 190781 190796, overlap 190787 190781 190805 TATAATTAATAAAAA TATTATTATTAAT GAT AATAATAATAATA TTTTTCTTATTATAA TERM 292 190821 - 190796 - G 93 -7.9 -5.2204 | opp_overlap 190787 190796 190781 190805, overlap 190780 190781 TATAATTAATAAAAA TATTATTATTA ATGA TAATAATAATA ATATTTTTCTTATTA lepA 192657 - 190867 - | GTP-binding protein LepA TERM 293 192124 - 192149 + g 72 -7.8 -3.73783 | opp_overlap 192123 192124, overlap 192110 192108 AGGCGAAGGTATAAC CTGAATTATT TTTTCT AATAATTCAG TTATTCCCTTACCTG TERM 294 192718 - 192703 - H 72 -3.4 -5.86332 | opp_overlap 192693 192710, overlap 192704 TTAATTTAAAAAAAA TTTTTT TTAT AAAAAA TAAATATTTTTAATA TERM 295 192816 - 192838 + H 95 -3.6 -6.71862 | opp_overlap 192812 192795, overlap 192812 192828 TTTTATACATATATT TTTGATATTT ATC AAATATAAAA TTTTTTTTTTATTTT trmU 192964 - 194085 + | hypothetical protein TERM 296 194273 - 194296 + F 74 -7 -4.48823 | opp_overlap 194273 194275, overlap 194268 TTTTTAGTTTTAATA TATTATTTTT TTAA AAAAATAATA TTTTATAGGTTAATT TERM 297 194424 - 194412 - g 81 -6.3 -5.01553 | opp_overlap 194412 AATGTATAAACAAAA TGCTA AAT TAGCA TTTGTATATCACAGT TERM 298 194913 - 194941 + G 100 -12.1 -3.88559 | opp_overlap 194922, overlap 194922 194940 AGTATCATCATATGG TATCAAAAATTTT AGC AAAATTTTTGATA TTTCTAAAAATAATT fabI 194317 - 195081 + | FabI TERM 299 195203 - 195227 + F 74 -4.5 -5.61596 | opp_overlap 195190 195196 195210 195225, overlap 195190 195206 195225 AATAAAAATATATTT TTATATATAAA TAT TTTATATATCA TTTTTTTCTAAAAGT TERM 300 195714 - 195735 + G 81 -7.5 -4.55295 | opp_overlap 195714 ACGAGATAATAATCA TTTTAGTAT TAAT ATACTAAAA TTTATTTCTGAAAAA rnb 195292 - 197238 + | exoribonuclease II TERM 301 197902 - 197914 + G 71 -3.5 -5.34632 | opp_overlap 197902, overlap 197906 AAAATGTTCAAGAAA TTTTT ATA AAAAA TTTTTATATTTTATT TERM 302 197906 - 197922 + G 73 -5.3 -5.03713 | opp_overlap 197902, overlap 197902 TGTTCAAGAAATTTT TATAAAA AAT TTTTATA TTTTATTTAATTATT lipB 197331 - 197939 + | hypothetical protein TERM 303 197984 - 197944 - f 77 -9.5 -2.99951 | opp_overlap 197949 197953, overlap 197950 197980 TTAATTATTAAATTA TAAAAACAATTATATATTT AAA AAATATATAATTAATTTTA ATAATAAAATATAAA TERM 304 197978 - 197950 - f 93 -8.5 -5.05228 | opp_overlap 197949 197953, overlap 197944 ATTAAATTATAAAAA CAATTATATATTT AAA AAATATATAATTA ATTTTAATAATAAAA TERM 305 197953 - 197975 + F 73 -8 -3.72743 | opp_overlap 197950 197944, overlap 197949 AAATTATAAAAACAA TTATATATTT AAA AAATATATAA TTAATTTTAATAATA lipA 198016 - 198948 + | lipoyl synthase sppA 200916 - 199051 - | hypothetical protein TERM 306 199953 - 199987 + g 72 -7.6 -3.59456 | opp_overlap 199973, overlap 199955 199980 TTAAAGTTATTTTCT TTTTATTAATATAA TAATTAT TTATATTAATAAAA TTATAATTATAATTT TERM 307 200358 - 200374 + g 71 -8.1 -3.32022 | opp_overlap 200353, overlap 200347 200346 TTTTCAAAAATATTT TGGTATT TGC AATACCA TTAATATGTACAGAA TERM 308 200952 - 200988 + r 72 -5.5 -4.98917 | opp_overlap 200952, overlap 200947 ATTTGCTTTTTATAA TATTTATTAATTTTTTT TAT AAAAAATTTTATAAATA TTTTATTATATTTTA yciA 201521 - 201093 - | YciA yciC 202375 - 201623 - | YciC TERM 309 201994 - 201982 - G 79 -3.5 -5.91981 | AAAATTGAAAAAAAA TTATT AAA AATAA AAATAATAAAATTTG TERM 310 202022 - 201998 - G 79 -4.5 -5.65496 | overlap 202001 TATTAAAAATAAAAA TAATAAAATTT GTA AAATTTTAGTA AGAATAATATATAAA TERM 311 202019 - 202001 - G 78 -6.2 -4.855 | overlap 201998 TAAAAATAAAAATAA TAAAATTT GTA AAATTTTA GTAAGAATAATATAT TERM 312 202301 - 202322 + g 81 -6.1 -5.04385 | opp_overlap 202301 202304, overlap 202304 ACTAAAAATAGATAG TAATAAAAT ATTT ATTTTATTA TTTTTTAAAAATCTA TERM 313 202968 - 202956 - g 100 -3.5 -6.95634 | TTAAAAAAAAAAAAA TTTTT ATA AAAAA TGAAAAAACAAAAAT yciL 202788 - 203518 + | YciL suhB 204426 - 203605 - | hypothetical protein TERM 314 203948 - 203983 + g 93 -6.5 -5.33331 | opp_overlap 203957, overlap 203950 TTTTTTTCATGTTTA TTTTTATAATACAAT GTTATA ATTGTATTATAAATA TTTTTATTATATTTG TERM 315 203950 - 203981 + g 84 -9.1 -4.26142 | opp_overlap 203957, overlap 203948 TTTTTCATGTTTATT TTTATAATACAAT GTTATA ATTGTATTATAAA TATTTTTATTATATT TERM 316 204278 - 204290 + g 79 -4.9 -5.4593 | opp_overlap 204276 204278 AAATTATTTATAATA GAAAA AGT TTTTC TTTTTATTCTTTTAA TERM 317 204300 - 204316 + g 100 -2.4 -7.00209 | TTTTTCTTTTTATTC TTTTAA TATAC TTAAAA TTTTTTTTTTTTTCT TERM 318 204599 - 204586 - g 72 -2.5 -5.76949 | TATGTGTAAAAAAAA TATTT TATC AAATA TTAAAAAAAAAAAAA yfgB 204572 - 205651 + | YfgB TERM 319 206500 - 206486 - g 70 -4.4 -5.09259 | TATTTTAAAATAAAA TTTATT ATA AATAAA AAACTAGTTAGAGGA hisS 205733 - 207010 + | hypothetical protein TERM 320 207869 - 207859 - g 72 -2.6 -5.7946 | opp_overlap 207859 207864 GTGGTAATAAAAAAA TTTA TTC TAAA TTAGATTCATCAGTA glyA 207123 - 208376 + | hypothetical protein TERM 321 208482 - 208520 + T 80 -7.8 -4.38472 | opp_overlap 208485, overlap 208470 208471 208478 208485 TTTTTTATTTAAAAT AAATAATTATGTTACA TGGTTTT TGTAACATAATTATTG TTATTTTAATTTAAA TERM 322 208517 - 208485 - T 95 -9.5 -4.68908 | opp_overlap 208471 208485 208482 208478 TTTATTTAAAATAAA TAATTATGTTACA TGGTTTT TGTAACATAATTA TTGTTATTTTAATTT TERM 323 208485 - 208517 + T 93 -9.5 -4.27914 | opp_overlap 208485, overlap 208471 208482 208478 TTTATTTAAAATAAA TAATTATGTTACA TGGTTTT TGTAACATAATTA TTGTTATTTTAATTT TERM 324 208567 - 208577 + T 72 -5.4 -5.10029 | opp_overlap 208567 ATTATTCTATTAAAA TCCA TAA TGGA TTTTTTCCGATTAAT pgl 209539 - 208553 - | 6-phosphogluconolactonase mfd 211650 - 209599 - | hypothetical protein TERM 325 209751 - 209761 + g 75 -2.6 -6.06723 | opp_overlap 209760, overlap 209736 TATATAACCATTGTA TATT TAA AATA TTTTTTTTTGAAAAA TERM 326 209897 - 209915 + g 82 -3.2 -6.11019 | opp_overlap 209897 AATTTTCCAAATATA TTAAACAT TGC ATGTTTTA TTTTTTTTAGTTTTT TERM 327 211137 - 211115 - G 72 -7.8 -3.68351 | opp_overlap 211115 211125, overlap 211125 TTTTTATTATCTAAA GCTATAAAAG TAG CTCTCATAGC TATTTCAGTTTTTCC gapA 212086 - 213084 + | hypothetical protein TERM 328 213149 - 213172 + T 72 -5.4 -4.99035 | opp_overlap 213127 213149 213171, overlap 213136 213151 213167 213171 ATTCAAGATAATTTA TTTTGATACT GTCA AGTATCAATA TTTTTATATAAATAA TERM 329 213151 - 213170 + T 76 -8 -4.11744 | opp_overlap 213127 213149, overlap 213136 213149 213167 TCAAGATAATTTATT TTGATACT GTCA AGTATCAA TATTTTTATATAAAT TERM 330 213167 - 213196 + T 78 -5.3 -5.4593 | opp_overlap 213149 213171 213185, overlap 213151 213149 213171 213185 TGATACTGTCAAGTA TCAATATTTTTAT ATAA ATAAAAATATTTA TTTTTATTATTTTAA TERM 331 213171 - 213192 + T 74 -6.1 -5.11254 | opp_overlap 213149 213171 213185, overlap 213149 213167 213185 ACTGTCAAGTATCAA TATTTTTAT ATAA ATAAAAATA TTTATTTTTATTATT fldA 213764 - 213225 - | hypothetical protein TERM 332 213622 - 213634 + g 76 -3.5 -5.75342 | opp_overlap 213622 CCAAAAAATAAAATA TTAAA TTT TTTAA TTTTTTTTAAAGAAG TERM 333 213914 - 213934 + H 71 -4.9 -5.25699 | opp_overlap 213924 TTGTTTATATATTTT TTGTATTAT ATT ATAATATAA TTTTTATTGTATAAT ybgI 214091 - 214648 + | YbgI TERM 334 214920 - 214902 - g 70 -4 -5.31158 | overlap 214914 214916 TAAAAAAATGAAAAA TAAAAAAA AAA TTCTTTTA TCAAAAAATGGATGG TERM 335 215161 - 215121 - g 100 -7.3 -6.72663 | opp_overlap 215121 215127 215152 AGAGAAAAAAAAAAA TAACAATCAAAAATTTTTA AAA CAAAAATTTTTAATTTTTA TTAATTCATATAGAA TERM 336 215656 - 215636 - g 81 -4.1 -5.95539 | overlap 215639 GTTTAAATAAAAAAA TTACTAAAA TAT TTTTAGGAA TGGCTCATAGAGGAA TERM 337 216098 - 216079 - g 79 -3.7 -6.07627 | opp_overlap 216079 ACTTCTAAAAAAAAA TATTTAC GTACTA GTAAATA TTGTACTGATATTGC sucA 214894 - 217695 + | 2-oxoglutarate dehydrogenase E1 component TERM 338 217725 - 217714 - g 82 -3 -6.11644 | TTATGGAAAAAAAAA CTAA AATA TTAG CTCCCAATTTACCTG TERM 339 218209 - 218199 - g 74 -5.4 -4.92655 | opp_overlap 218203 218204, overlap 218203 218204 AAAAAAAATAATAAA CGAA TTT TTCG AAAAATTGCTATGAG TERM 340 218490 - 218459 - g 82 -2.6 -6.40073 | gap 1, opp_overlap 218466, overlap 218466 AATTGAAAAAAAAAA TATTATATATCATGA TTA TTATGATAT-TAATA TTGCTATATCTACTC TERM 341 218555 - 218537 - g 77 -5.4 -5.09426 | opp_overlap 218541 TCCAATTTTAAAAAA TACAGATA ATT TATCTATA TATGAAATTGAAAAA TERM 342 218774 - 218764 - g 72 -2.6 -5.8187 | TAGTTAATAAAAAAA TAAA AAT TTTA CCTATGATGTATCTT sucB 217701 - 218897 + | 2-oxoglutarate dehydrogenase E2 component TERM 343 219075 - 219062 - f 72 -2.5 -5.96894 | ATTGAAATAAAAAAA TATAT AAAT ATATA AATTATTAATATTAA TERM 344 219311 - 219295 - g 82 -5.1 -5.63857 | overlap 219298 AAAAATGGAAAAAAA GAAGCAA AAC TTGCTGC AAAATTAATAAAAAA TERM 345 219308 - 219298 - g 74 -5.4 -4.83715 | overlap 219295 AATGGAAAAAAAGAA GCAA AAC TTGC TGCAAAATTAATAAA gpmA 219187 - 219879 + | hypothetical protein pfkA 220001 - 220963 + | 6-phosphofructokinase TERM 346 220983 - 221010 + T 84 -10.6 -2.95106 | opp_overlap 220966 220965 220983 220985, overlap 220988 TTTTTTTAAAAAAAA TATAAGTGCCGG AATA CCGGCGCTTAAA TATAATTAAATTATT TERM 347 221010 - 220983 - T 100 -8.4 -5.75342 | opp_overlap 220983 220988, overlap 220966 220965 220985 TTTTTTTAAAAAAAA TATAAGTGCCGG AATA CCGGCGCTTAAA TATAATTAAATTATT TERM 348 221008 - 220985 - T 100 -11 -4.52949 | opp_overlap 220983 220988, overlap 220965 220983 TTTTTAAAAAAAATA TAAGTGCCGG AATA CCGGCGCTTA AATATAATTAAATTA TERM 349 220988 - 221005 + T 84 -10.5 -3.16267 | opp_overlap 220985 220983, overlap 220983 TTAAAAAAAATATAA GTGCCGG AATA CCGGCGC TTAAATATAATTAAA tpiA 221891 - 221127 - | hypothetical protein TERM 350 221905 - 221947 + r 100 -13.1 -3.3506 | opp_overlap 221913, overlap 221909 ATTTATATCACCTTT TTGAGCAATTATTGGAGTA CAATA TACTCTAATAATTGCTGAA TTATAAAAATTTACC TERM 351 221909 - 221943 + r 100 -13.9 -2.59927 | opp_overlap 221913, overlap 221905 ATATCACCTTTTTGA GCAATTATTGGAGTA CAATA TACTCTAATAATTGC TGAATTATAAAAATT himD 222293 - 222000 - | HimD rpsA 224012 - 222342 - | 30S ribosomal protein S1 TERM 352 222380 - 222396 + g 81 -6.7 -4.78933 | CTTTCGTCATAATTG TATCAAT ATT ATTGATA TTTTCTATATTTTCA TERM 353 223507 - 223525 + g 84 -6.1 -5.2422 | ATAACTGCTTTACGT GAAACAA CAACA TTGTTTC TTTTTTGGTCTAATT TERM 354 223836 - 223848 + g 78 -6.3 -4.82333 | AATTTTTATTTCTAC TTCTC CTT GAGAA TTTTTAAATTGTTCT TERM 355 224024 - 224044 + r 76 -8.5 -3.78018 | opp_overlap 224023 224026 224043 TCATATTAAATAATC TATTGTAAT AAT ATTACAATA TTTAAATAATTTTTA TERM 356 224073 - 224043 - R 90 -11.6 -3.56958 | opp_overlap 224024 224045 224051, overlap 224023 224051 GTAATAATATTACAA TATTTAAATAATTT TTA AAATTATTTAAATA AAATGTAATATAATA TERM 357 224113 - 224095 - R 87 -6.1 -5.94214 | AATATAATAAAAAAA CCATTTA TATTT TAAATGG ACTGAATAATAATTT TERM 358 224134 - 224152 + r 85 -6.2 -5.40474 | opp_overlap 224126 224134 224148 ATAATAATTTTTAAA TTTTATTT TAA AAATAAAA TTTTTTTAAAAAAAT aroA 225559 - 224252 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 359 224549 - 224569 + g 75 -2.7 -6.06723 | opp_overlap 224550 224552 224554, overlap 224550 TTTAACTCTCCAATT ATATATATT TTT AATATATAC TTTTTTTTTAGAAAA TERM 360 224550 - 224568 + g 71 -6.2 -4.22949 | opp_overlap 224550 224552 224554, overlap 224549 TTAACTCTCCAATTA TATATATT TTT AATATATA CTTTTTTTTTAGAAA serC 226714 - 225626 - | phosphoserine aminotransferase TERM 361 225998 - 225988 - G 70 -4 -5.20216 | opp_overlap 225988 CATACCATGAAAAAA TACT AGG AGTA TTTAACATAGATTTT serS 228110 - 226809 - | hypothetical protein TERM 362 226947 - 226962 + g 83 -3.4 -6.19302 | overlap 226948 ACCATTTAATGTATG TAAAAA AAAA TTTTTA TTTTTTTTCTTATCT TERM 363 229252 - 229232 - g 89 -9.9 -4.23529 | opp_overlap 229236, overlap 229236 ATATGAAGACACAAA CAAATATTC CAG GAATATTTG CAGCTGGAGATGTTT trxB 228397 - 229386 + | hypothetical protein infA 229401 - 229616 + | hypothetical protein TERM 364 230899 - 230880 - g 71 -6.6 -4.05669 | opp_overlap 230883, overlap 230878 230883 AATTGCAGAAAAATA TAATATTG CAAA CAATATTA GTAATCTTTTACGAA TERM 365 231196 - 231179 - g 73 -4.3 -5.4182 | overlap 231188 231190 AATTACAAATAAAAA TTTTTAA TATA TTAAAAA TTAACAAAAATAAAC aspS 229678 - 231393 + | AspS TERM 366 231574 - 231562 - g 86 -4.9 -6.08563 | overlap 231568 AAGATATAAAAAAAA GTAAA ATA TTTAC TAAAATAACAAGAAA TERM 367 231830 - 231849 + G 71 -3.7 -5.33866 | opp_overlap 231818 231824 231830 TAATAGTAATAGAAC TATTTCT AATATA AGAAATA TTTTTTCTAAATTTA TERM 368 231892 - 231907 + G 83 -3.4 -6.19302 | opp_overlap 231892 TAAAATACAATGATA TTAAAT ATTT ATTTAA TTTTTTTTATTATAT yebC 231498 - 232226 + | YebC pykA 233920 - 232481 - | PykA TERM 369 232564 - 232576 + g 79 -3.5 -6.04324 | TGACAATAATTTCAT TTTTT TTT AAAAA TTTTTTCTTTTTTAG TERM 370 235156 - 235118 - g 84 -4.9 -5.75538 | opp_overlap 235126 235149, overlap 235112 235149 CTGAAAAAATAAAAA TTTTAAAATCATTATAT ATTAA AAATAATGATATTAAAA ATAATATATCATTAG TERM 371 235311 - 235297 - g 78 -4.3 -5.82172 | opp_overlap 235292 235297 ATTAATACAAAAAAA TGGAA AAATG TTCCA TTTTATATTCGTACT zwf 234325 - 235785 + | hypothetical protein TERM 372 235822 - 235782 - f 70 -7.3 -3.83864 | opp_overlap 235781 235780 235787 235816, overlap 235779 235797 AAAATGGGATAATAA TTAAATAATTATAAATATA TTT TATATATATAGTTATTTAA AATTTTAAATATATT htpX 235925 - 236815 + | hypothetical protein TERM 373 236827 - 236869 + F 85 -9.1 -4.10657 | gap 1, opp_overlap 236819 236829 236868, overlap 236824 236868 ATAAATATGTTATTA TATTAAATATAATT-TTATT ATTT AATAATAATTATATTTAATA TTTTAAGAAATATAA TERM 374 237074 - 237042 - f 71 -6.7 -4.25502 | opp_overlap 237019 237016 237040 237047, overlap 237040 TTTAAAAATAAAATA TATAATAATATAA TATTTAT TTATATTATTATA AAATATTGACAAATA TERM 375 237505 - 237495 - g 100 -5.4 -7.14698 | AAAAAAAAAAAAAAA GATC TTA GATC AAGCTTTTGGTATAT TERM 376 237961 - 237945 - g 70 -5.3 -4.90266 | overlap 237929 TTTATTAATCAAAAA TTTTTAT TTA ATAAAAA AAAAAATATTAAATA TERM 377 238237 - 238221 - g 84 -5.3 -5.77571 | ATTAAAAAAGAAAAA TTAATTA ATT TAATTAA TAAAAATAAAAATAT TERM 378 238263 - 238250 - g 72 -2.5 -5.74684 | opp_overlap 238250 238259, overlap 238256 238259 238262 TAATAAAAATAAAAA TATAA ACAA TTATA TTGAATATAATTCAT TERM 379 238611 - 238597 - g 84 -5 -5.90231 | ATAAATATAAAAAAA TTCCTA AAA CAGGAA AAATAATAATTTATA TERM 380 238615 - 238636 + G 71 -6.1 -4.1964 | opp_overlap 238615 238621, overlap 238618 238621 CTAAAACAGGAAAAA TAATAATTT ATAA AAATTATTA TTTTAAAATATTAAA TERM 381 238636 - 238615 - g 81 -6.1 -4.98616 | opp_overlap 238615 238618 238621, overlap 238621 CTAAAACAGGAAAAA TAATAATTT ATAA AAATTATTA TTTTAAAATATTAAA yoaE 237138 - 238727 + | YoaE yeaZ 238727 - 239401 + | YeaZ minE 239680 - 239432 - | hypothetical protein minD 240498 - 239686 - | hypothetical protein minC 241256 - 240534 - | hypothetical protein TERM 382 240928 - 240944 + g 73 -5.3 -5.06465 | overlap 240926 AAAAAATTTTTCTTT TTATTAA AAT TTAATAA TGTTTTTTTTTTTTT TERM 383 241515 - 241498 - g 78 -2.1 -6.21477 | overlap 241487 AATATTAAAAAAAAA TTTTCAA TTAT TTAAAAA CAAAACTACAATTAT TERM 384 242027 - 241998 - g 74 -3 -5.71712 | overlap 242002 242022 TTGGATATAAAAAAA TTGATACTGGTA GTAAAT TACTAATATCAA CCTTTAATAAAAAAA TERM 385 242256 - 242238 - g 71 -3.2 -5.60864 | opp_overlap 242240, overlap 242243 CACATATTAAAAAAA GATATGAT CTG ATTATATC TAATCCACCTATTCA TERM 386 242394 - 242412 + G 71 -6.2 -4.28651 | opp_overlap 242391 242394 242398 CGTTAAAATATATTA TTAATTTT AAT AAAATTAA TTTTAAAATTTTACT rsmC 241436 - 242467 + | 16S RNA m2G1207 methylase TERM 387 242523 - 242543 + T 74 -8.3 -3.39772 | opp_overlap 242515 242523, overlap 242526 AAAGCTATTAAAAGC CGAGGGATT TTA AGTCCCTTG TGTTTACCAATTTCA TERM 388 242644 - 242630 - T 71 -8.6 -3.16267 | TTGAACCAGATTCAA CGGATT TGC AATCCG CTACATAACCATTCT TERM 389 242879 - 242856 - T 70 -6.2 -4.40478 | overlap 242854 GAAATACAAAAAATA TTCTATGAAA TACA TTTCATAAAA ATAATTAAATAAATT TERM 390 242911 - 242893 - T 73 -6.2 -4.63748 | opp_overlap 242892 242897 AAATAATTAAATAAA TTTTTAAT TTT ATTAAAAA AATTATTTAGAATTT ompA 243996 - 242914 - | OmpA TERM 391 243103 - 243088 - G 73 -4.8 -5.28778 | ATTATTTACAAAAAA TTTAGA AATT TCTAAA GCTCTTTTAAAAGAC TERM 392 243177 - 243189 + g 91 -4.9 -6.11229 | opp_overlap 243177, overlap 243171 TTCCTGTAATTATAA GATAA ATT TTATC TTTTTTTATTTTACT TERM 393 244575 - 244522 - H 71 -2.2 -6.06529 | opp_overlap 244522 244532, overlap 244545 244572 TATATATAAAAAAAA TTTACTATTTTTATATTATTGAAT ATTATA ATTTAAAAATATAATAATAATAAA TTGTATTTAAATATA TERM 394 244621 - 244592 - H 70 -7.5 -3.84185 | overlap 244596 244605 244608 TGTATTTAAATATAA TAAATCAAATTAA TTAT TTAATTTAATTTA AATAAAAAATAAAAA TERM 395 245491 - 245481 - g 75 -4 -5.59357 | ATGATATTAAAAAAA CAAA TAA TTTG ATAAATACATTAAAT flgF 244844 - 245548 + | FlgF TERM 396 245617 - 245653 + F 72 -7.6 -4.18115 | gap 1, opp_overlap 245617 245615 245613, overlap 245615 245619 ATTTGACAGAACACA TTGTATAGAAACTAGAT GAAA ATCT-GTTTCTATACTA TATTTTTATATTAAT TERM 397 245619 - 245651 + F 87 -10.2 -3.66691 | gap 1, opp_overlap 245617 245615 245613, overlap 245617 245615 TTGACAGAACACATT GTATAGAAACTAGAT GAAA ATCT-GTTTCTATAC TATATTTTTATATTA TERM 398 245835 - 245869 + G 74 -3.1 -5.76633 | opp_overlap 245845, overlap 245834 245839 AAATCAATTTATTTT TTTTTTAAAATAGTT CTATT AACTATTTTAATTAA TTTTTTTATATATAA TERM 399 245839 - 245865 + G 77 -8.3 -4.10161 | opp_overlap 245845, overlap 245834 245835 CAATTTATTTTTTTT TTAAAATAGTT CTATT AACTATTTTAA TTAATTTTTTTATAT TERM 400 246154 - 246134 - g 79 -7.1 -4.62002 | ATTAATTAGAGAAAA TTTTTTTTT AAA AAAAAAAAA AAAAACAAACGATTT TERM 401 246221 - 246205 - g 83 -6.7 -5.06472 | ATATAAATAATAAAA TGATATT TAA AATATCA ACTACAGTTATTAAA TERM 402 246292 - 246280 - g 91 -3.5 -6.63964 | opp_overlap 246280, overlap 246284 TAGGAAAAAAAAAAA TTATT ATT AATAA TAGTATACAAACAAT TERM 403 246437 - 246407 - g 83 -6.4 -5.08178 | opp_overlap 246416, overlap 246409 246416 ATATATACATAAAAA CATAAAAAAGAATA TTT TATTCTTTTATATA AAAAAAATTATTCAT TERM 404 246435 - 246409 - g 71 -6.8 -4.15325 | opp_overlap 246416, overlap 246407 246416 ATATACATAAAAACA TAAAAAAGAATA TTT TATTCTTTTATA TAAAAAAAATTATTC TERM 405 246428 - 246416 - g 82 -4.9 -5.69068 | opp_overlap 246416, overlap 246409 246407 TAAAAACATAAAAAA GAATA TTT TATTC TTTTATATAAAAAAA flgH 245817 - 246464 + | FlgH TERM 406 247147 - 247137 - g 75 -2.6 -5.9663 | opp_overlap 247137 AAATATTAAAAAAAA TTTT GAA AAAA ATTAATTATTATTAT flgI 246530 - 247351 + | FlgI TERM 407 247412 - 247388 - f 74 -8.9 -3.17222 | opp_overlap 247384 247387 247388 247394 247407, overlap 247386 247384 247394 247407 TAAATTATTAATATA TTAAAATTTTT AAT AAAAATTTTAA ATTTATAAAAATTTA TERM 408 247388 - 247412 + F 73 -8.9 -2.94161 | opp_overlap 247386 247384 247388 247394 247407, overlap 247384 247387 247394 247407 TAAATTATTAATATA TTAAAATTTTT AAT AAAAATTTTAA ATTTATAAAAATTTA TERM 409 247430 - 247407 - f 81 -7 -5.08088 | opp_overlap 247388 247387 247407, overlap 247388 AATTTTTAATAAAAA TTTTAAATTT ATAA AAATTTAAAA TAATATTATATACAA rluC 247506 - 248459 + | RluC rpmF 248531 - 248716 + | 50S ribosomal protein L32 TERM 410 248831 - 248881 + F 100 -8.8 -5.17576 | opp_overlap 248820 248833 248853 248874, overlap 248833 248839 248874 AGTATATTTCTTAAA AATTTTTATATTTCATTAAAAATA AAA TATTTTTAATGAAATATTTAAATA TTTTTTAAATTAATA TERM 411 248833 - 248879 + F 100 -11.4 -4.20888 | opp_overlap 248820 248833 248853 248874, overlap 248831 248839 248874 TATATTTCTTAAAAA TTTTTATATTTCATTAAAAATA AAA TATTTTTAATGAAATATTTAAA TATTTTTTAAATTAA TERM 412 248879 - 248833 - f 100 -11.4 -4.59109 | opp_overlap 248831 248833 248839 248874, overlap 248820 248853 248874 TATATTTCTTAAAAA TTTTTATATTTCATTAAAAATA AAA TATTTTTAATGAAATATTTAAA TATTTTTTAAATTAA TERM 413 248839 - 248873 + F 100 -14.8 -3.90874 | opp_overlap 248820 248833 248853, overlap 248833 248831 TCTTAAAAATTTTTA TATTTCATTAAAAATA AAA TATTTTTAATGAAATA TTTAAATATTTTTTA TERM 414 248957 - 248925 - f 70 -3.7 -5.63645 | opp_overlap 248916 248933 248935, overlap 248916 248926 TTAAAATATAAAAAA TTTATATTTATTATT ATA AATAATATATATAAT TAAAATTTAAATATT TERM 415 248956 - 248926 - f 70 -7.2 -3.95747 | opp_overlap 248916 248933 248935, overlap 248916 248925 TAAAATATAAAAAAT TTATATTTATTATT ATA AATAATATATATAA TTAAAATTTAAATAT TERM 416 249310 - 249296 - g 70 -7.2 -3.66646 | opp_overlap 249298 AATATCTTATTTAAA GATTCT CTT AGAATC ATTCAAATACGTAAC TERM 417 249446 - 249436 - g 82 -2.6 -6.38492 | ATCAACAAAAAAAAA TAAA GCA TTTA TATCAGCAATTAATT fabD 248975 - 249913 + | hypothetical protein TERM 418 250052 - 250036 - g 71 -3.1 -5.54894 | AATGGACTAAAAAAA TTAAATA AAA CATTTAA AAAAAAAGGAACTGG TERM 419 250496 - 250477 - g 82 -5.2 -5.70829 | overlap 250469 AATATGACAAAAAAA TTTTTATT GGCT AATAAAAA AAACATTTTAAAAAA fabG 249910 - 250647 + | 3-oxoacyl-(acyl-carrier protein) reductase acpP 250714 - 250956 + | hypothetical protein holB 250965 - 251942 + | DNA polymerase III, d' subunit TERM 420 252243 - 252233 - g 82 -2.6 -6.31682 | AAAATTAAAAAAAAA TATT AAT AATA ATAAAGTTATTGCTA TERM 421 252325 - 252308 - g 100 -3.5 -7.00209 | overlap 252309 ACAAAAAAAAAAAAA CCAAATA AAAC TATTTGA ATATCATTTACATCT ycfH 251985 - 252779 + | YcfH TERM 422 252819 - 252860 + T 73 -6.3 -4.70613 | opp_overlap 252821 252852 252856 252859, overlap 252821 TTTATAATAAATAAA AATTCTAAATTTAAATTAA GAAA TTAATTTAAATTTACAATA TTTTATTAAAATTTT TERM 423 252858 - 252821 - T 100 -8.9 -5.50774 | opp_overlap 252819 252821, overlap 252852 252856 TATAATAAATAAAAA TTCTAAATTTAAATTAA GAAA TTAATTTAAATTTACAA TATTTTATTAAAATT TERM 424 252821 - 252858 + T 81 -8.9 -3.9504 | opp_overlap 252821 252852 252856, overlap 252819 TATAATAAATAAAAA TTCTAAATTTAAATTAA GAAA TTAATTTAAATTTACAA TATTTTATTAAAATT TERM 425 252891 - 252852 - T 70 -7.6 -3.83816 | opp_overlap 252821 252819 252861 252861, overlap 252821 252856 252859 252872 AGAAATTAATTTAAA TTTACAATATTTTATTAA AATT TTAATAAAATATTAAAAA AAATATATATAAAAT TERM 426 252884 - 252859 - T 71 -7.9 -3.48465 | opp_overlap 252819 252861 252861, overlap 252856 252852 252872 AATTTAAATTTACAA TATTTTATTAA AATT TTAATAAAATA TTAAAAAAAATATAT TERM 427 253251 - 253224 - T 74 -3.7 -5.94743 | gap 1, opp_overlap 253224, overlap 253250 CAAAAAAAATAAAAA TCTTTATTTTGA TTAAT TCA-AATAAAGA TTTTTAAAAATCTGC asnC 254640 - 253255 - | asparaginyl-tRNA synthetase yceA 255739 - 254777 - | YceA TERM 428 255612 - 255574 - G 71 -6.4 -4.08394 | opp_overlap 255581, overlap 255592 ATATTCTCCCTAAAA TATTTTCTTTTACTAAAA TTT TTTTAATAAAAAATAATA ATTTTTCAGGATTAG valS 258646 - 255791 - | hypothetical protein TERM 429 255944 - 255963 + g 77 -3 -5.95539 | TTTTAATATTTTAAT TTGTTTTT CAAG AAAAATAA TTTTTTTATTTAAAC TERM 430 256109 - 256127 + g 74 -6.2 -4.49377 | opp_overlap 256108 256111, overlap 256111 TAATTTTAAATAAGC TATTTTTT TTA AAAAAATA TTATTTTCTTGTAAA TERM 431 256307 - 256289 - G 75 -9 -3.12874 | opp_overlap 256284 ATATATATTATTTAA TCCTATAT TAT ATATAGGA AAAGAATTCATAATT TERM 432 257559 - 257599 + g 80 -8.7 -4.13282 | opp_overlap 257551 257569, overlap 257569 TAAGGTATTCCTATT TTATAAGAAACAGATTTTT TTA AAAAATTTGTTTTTTTTAA TTTTGAAAGTATAAT TERM 433 257569 - 257589 + g 100 -6.3 -6.07969 | opp_overlap 257569, overlap 257559 CTATTTTATAAGAAA CAGATTTTT TTA AAAAATTTG TTTTTTTTAATTTTG TERM 434 257668 - 257679 + g 74 -3 -5.79526 | opp_overlap 257668 TAGGGATATCAGAAT CAAA AATA TTTG TTTTTTTTCCCGTAT TERM 435 258764 - 258804 + H 74 -7.3 -4.32903 | opp_overlap 258763 258764 258766 258778 258803, overlap 258803 ACATGATTTAATAAT TATTAATATAAATATATTT AAA AAATATTTGTATATTAATA TTTTAAATATTTAAT TERM 436 258934 - 258921 - H 72 -2.5 -6.09133 | opp_overlap 258921 TATTTTAAAAAAAAA TTTAA TAAA TTAAA TTGTTTTTTTTAATA TERM 437 259717 - 259707 - g 82 -2.6 -6.47325 | overlap 259712 AAAAAATAAAAAAAA TATA CTT TATA CTAAAAATATAGAAA argF 259090 - 260091 + | hypothetical protein TERM 438 260093 - 260081 - f 86 -3.5 -6.48081 | opp_overlap 260081 TGCATAAAAAAAAAA TTTTA ATA TAAAA TATTCATTTATATAT TERM 439 260394 - 260367 - g 72 -8.7 -2.85008 | opp_overlap 260370 260388, overlap 260364 260388 TTTTACAACAAATAT GGATAAATTAA ATGAAA TTAATTTATCC TATAAAAATTTTTTT yhaR 260143 - 260508 + | YhaR TERM 440 260533 - 260515 - T 100 -11.8 -4.49556 | opp_overlap 260513, overlap 260497 GCTTTATGAAATAAA TATGCCAC TTA GTGGCATA AAATTGATATTTTAA deaD 262332 - 260602 - | ATP-dependent RNA helicase TERM 441 260992 - 260976 - G 71 -6.7 -4.11623 | overlap 260984 GATTATTAAACGAAA TAAAAGA ATT TCTTTTA AAAGAAAGAGGAGAA TERM 442 261550 - 261568 + g 73 -4.6 -5.24129 | TTTTTCTAATGCTTC TGATACTT CTA AAGTAGCA TTTTTTGTACGAACA TERM 443 262499 - 262466 - R 74 -5 -5.55855 | gap 1, opp_overlap 262470 262497, overlap 262470 262486 262497 TTTAAAAAAACAAAA GTAATTTTAATAAAA AAAAA TTTTATTAAAATT-C TTAATGTTTTTTAAT TERM 444 262496 - 262486 - R 79 -2.6 -6.36459 | opp_overlap 262470, overlap 262470 262466 TTTAATAAAAAAAAA TTTT ATT AAAA TTCTTAATGTTTTTT pnp 264695 - 262614 - | polynucleotide phosphorylase/polyadenylase TERM 445 264840 - 264786 - R 77 -4.6 -5.65927 | opp_overlap 264806 264808, overlap 264795 264797 264808 TATTTAAATAAAAAA TAACCTAAATATATAGAAAAAAGCTA TAT TAGCTCTTTTCTATAAATAAAATTTA TACTCAATTTATTAA TERM 446 264831 - 264795 - R 93 -11.9 -3.96481 | opp_overlap 264806 264808, overlap 264786 264797 264808 AAAAAATAACCTAAA TATATAGAAAAAAGCTA TAT TAGCTCTTTTCTATAAA TAAAATTTATACTCA TERM 447 264829 - 264797 - R 100 -14.5 -3.53464 | opp_overlap 264806 264808, overlap 264795 264786 264808 AAAATAACCTAAATA TATAGAAAAAAGCTA TAT TAGCTCTTTTCTATA AATAAAATTTATACT TERM 448 264818 - 264808 - R 78 -5.4 -5.46276 | opp_overlap 264806 264808, overlap 264797 264795 264786 AATATATAGAAAAAA GCTA TAT TAGC TCTTTTCTATAAATA rpsO 265160 - 264891 - | 30S ribosomal protein S15 truB 266157 - 265222 - | hypothetical protein TERM 449 265704 - 265688 - G 70 -5.3 -4.76213 | opp_overlap 265686 265688, overlap 265683 ACAAATTGAATAAAA TTTATTT TAT AAATAAA TAGTTTTCTTTTTTT TERM 450 265754 - 265773 + g 74 -8 -3.72576 | opp_overlap 265750 AATCGAGCATATTTA TATAATGG AATT CCATTATA TTTAATCGCAGAAAA TERM 451 266044 - 266060 + g 75 -2.4 -6.08563 | overlap 266044 266049 266051 266053 TCCAGTGTATCCAGC TTTTTT AGCTA AAAAAA TTTTTTTTATCTGTT TERM 452 266235 - 266190 - R 86 -11.7 -2.68755 | opp_overlap 266206, overlap 266187 266202 ATAATTAGGATATTA TTTATTACTAAATTAATTAAA TATT TTTAATTAATTCAGAAATAAA AATACCATTAATAAG rbfA 266556 - 266206 - | hypothetical protein TERM 453 266353 - 266365 + g 79 -3.5 -5.9873 | opp_overlap 266353 TTGTAAAATACCTAA TATTA TTT TAATA TTTTTTTTATCATCA infB 268787 - 266634 - | hypothetical protein TERM 454 268600 - 268619 + g 100 -8 -6.25242 | overlap 268596 TTTCTTTTTTTTTTA GATTCTAA ATTT TTAGAATC TTTTTTTTTAATTCT TERM 455 268671 - 268707 + g 88 -4 -6.37666 | opp_overlap 268673, overlap 268677 AATATTACTTTTTAA TATTTTTTCTTTTTTT TTTTC AAAAAAAGAATTAATA TTTTTTTTATTTTCT TERM 456 268677 - 268701 + g 72 -7.4 -3.7553 | opp_overlap 268673, overlap 268671 ACTTTTTAATATTTT TTCTTTTTTT TTTTC AAAAAAAGAA TTAATATTTTTTTTA TERM 457 269006 - 268971 - R 71 -8 -3.58247 | opp_overlap 268967 268971, overlap 268967 TTTAAAAAAATTTAA TACTTATTAATATA TCTTTTAT TATATTAATAAGTA TTTTCATATTTTAAT TERM 458 268971 - 269006 + r 80 -8 -4.56729 | opp_overlap 268967 268971, overlap 268967 TTTAAAAAAATTTAA TACTTATTAATATA TCTTTTAT TATATTAATAAGTA TTTTCATATTTTAAT nusA 270514 - 269027 - | NusA TERM 459 269445 - 269467 + g 100 -6.5 -6.11229 | opp_overlap 269433 269445 TTATTTTTTAATATA TCAAAAAAA TTATT TTTTTTTGA TTTTTTTATTTTAAT TERM 460 270587 - 270575 - R 71 -4.9 -5.33026 | GAATTCAAAGAAAAA GAAAA TTT TTTTC AATCAAAATAAAAAA TERM 461 270718 - 270702 - R 100 -12.3 -5.64873 | opp_overlap 270697 TTTAATAATAAAAAA CCCCGAA TTT TTCGGGG TTAAAATTTTAAATA TERM 462 270977 - 270962 - R 75 -3.4 -5.99318 | opp_overlap 270962 270971 270976, overlap 270976 AAAAAAAAACAAAAA TATTTT TAAT AAAATA TATTTTATATATATA secG 271288 - 271040 - | SecG TERM 463 271116 - 271106 - G 75 -2.6 -5.92337 | overlap 271109 ACATACCAAAAAAAA TATT ATT AATA AGATTAATATAACAT TERM 464 271317 - 271351 + r 72 -9 -2.74371 | opp_overlap 271308 271309 271322, overlap 271308 271309 271322 AAAATATTTTTTAAA AAAAATTATATATTAA TAA TTAATATATAATTTTA TGCTATTAAAAAATT TERM 465 271322 - 271346 + r 89 -8.9 -4.55023 | opp_overlap 271322, overlap 271317 ATTTTTTAAAAAAAA TTATATATTAA TAA TTAATATATAA TTTTATGCTATTAAA TERM 466 271346 - 271322 - R 100 -8.9 -5.75945 | opp_overlap 271322 271317 ATTTTTTAAAAAAAA TTATATATTAA TAA TTAATATATAA TTTTATGCTATTAAA TERM 467 271560 - 271521 - R 100 -11 -5.04385 | opp_overlap 271530 271532, overlap 271524 CACATTTTTAAAAAA TAACAATGATATCTATTC TTTA GAATAGATATCATTGAAA TAAATGAAATTAATA TERM 468 271557 - 271524 - R 100 -17.1 -4.62085 | opp_overlap 271530 271532, overlap 271521 ATTTTTAAAAAATAA CAATGATATCTATTC TTTA GAATAGATATCATTG AAATAAATGAAATTA TERM 469 271530 - 271551 + r 72 -8.9 -2.73681 | opp_overlap 271524 271521, overlap 271532 AAAAAATAACAATGA TATCTATTC TTTA GAATAGATA TCATTGAAATAAATG TERM 470 271580 - 271598 + r 73 -6.2 -4.58663 | opp_overlap 271576 271570 271590, overlap 271578 271588 271590 TGAAATTAATATATT TTATTAAA AAT TTTAATAA TTTTTAAAAAATAAT TERM 471 271618 - 271590 - R 73 -6.3 -4.74132 | opp_overlap 271580 271588 271590, overlap 271576 271570 271614 ATATTTTATTAAAAA TTTTAATAATTTT TAA AAAATAATTAAAA TCATTTTTATGAAAA hflB 273524 - 271722 - | ATP-dependent protease TERM 472 272489 - 272461 - G 75 -6 -4.63527 | opp_overlap 272450 TCAGCACCTGAAAAA CCTGGTGTACTT TTTGC AAGTACTTCAGG AATAACATCATCAGA ftsJ 274208 - 273579 - | hypothetical protein TERM 473 274369 - 274353 - R 85 -5.3 -5.88565 | opp_overlap 274353, overlap 274345 TTTACAATAAAAAAA TATTTTT ACA AAAAATA TTTAAGTTTATTATA greA 274958 - 274479 - | hypothetical protein TERM 474 274722 - 274697 - G 71 -5.7 -4.70659 | gap 1, opp_overlap 274703, overlap 274703 CTGTAGATCCAAAAA TAACAATACCTT TAA AAGGTATT-TTA GTAATATCAATTATT TERM 475 274703 - 274717 + g 76 -7.2 -4.33274 | opp_overlap 274697 274703 ATCCAAAAATAACAA TACCTT TAA AAGGTA TTTTAGTAATATCAA TERM 476 274717 - 274703 - G 76 -7.2 -4.32491 | opp_overlap 274703, overlap 274697 ATCCAAAAATAACAA TACCTT TAA AAGGTA TTTTAGTAATATCAA TERM 477 275284 - 275305 + H 70 -3.9 -5.63517 | opp_overlap 275262 275257 275288 275301 275302 275304, overlap 275259 275257 275256 275304 AATAAAAAATTTTTA TATATATTA AAAA TAATGTATA TTTTTTATTTAAAAA yrbA 275374 - 275628 + | YrbA TERM 478 275933 - 275917 - f 76 -6.7 -4.77173 | opp_overlap 275917, overlap 275901 TTTGTATAAAATAAA CAAAAAA ATT TTTTTTG TAGTTAATTATAAAA rplU 275965 - 276276 + | 50S ribosomal protein L21 TERM 479 276304 - 276288 - f 72 -5.3 -5.14985 | TTAAATATACAAAAA TATATTT TAA AAATATA AGGAATTAAAATGGC rpmA 276315 - 276620 + | 50S ribosomal protein L27 TERM 480 277103 - 277089 - g 79 -2.8 -6.13503 | CACCAAGAAAAAAAA CTTATG GTA CATTAG GTGAAAACAAAAATA yhbZ 276665 - 277681 + | Obg family GTP-binding protein TERM 481 277706 - 277716 + T 72 -2.6 -5.97575 | opp_overlap 277687, overlap 277687 AAAATATTCTTTTTA TATT TTA AATA TTTTTTTTATAAATT rpsI 278141 - 277779 - | 30S ribosomal protein S9 rplM 278602 - 278174 - | 50S ribosomal protein L13 TERM 482 278799 - 278782 - g 91 -3.5 -6.50278 | overlap 278783 AAATGAAAAAAAAAA CTCTTAA TTAT TTAAGAA GTCAAATAAATTATA TERM 483 279262 - 279246 - g 80 -9.5 -3.45982 | overlap 279244 279242 ATAGAAAATAATATA TCAGGAA TTA TTCCTGA AGTATACGAGATACT TERM 484 279444 - 279428 - g 75 -5.9 -4.58283 | overlap 279429 TAATTTTCTTAAAAA CTTTCCA AAA TGGAAAA AACATTGTTTTAATA TERM 485 279665 - 279655 - g 73 -4 -5.40072 | opp_overlap 279661, overlap 279661 TTGTTTCTAAAAAAA TAAC TAT GTTA TTAACAATTATTAAA pheA 278769 - 279923 + | hypothetical protein TERM 486 280828 - 280812 - g 84 -5.2 -5.85737 | ACATTAACAAAAAAA CCAATA AAATA TATTGG AACTGGAGAAAAAAT TERM 487 281325 - 281315 - g 88 -4 -6.32017 | AACAAATAAAAAAAA CAAA ATA TTTG AAAGTATTAAAAATT ffh 280008 - 281354 + | hypothetical protein rpsP 281409 - 281675 + | 30S ribosomal protein S16 rimM 281693 - 282202 + | 16s rRNA processing protein trmD 282214 - 282900 + | hypothetical protein TERM 488 282920 - 282898 - f 95 -8 -5.27023 | opp_overlap 282898 282897 282901 ATTTTAAAAAGAAAA TAATTATATA TAA TATATAATTA ATATTATTTAAAATA rplS 282971 - 283318 + | 50S ribosomal protein L19 TERM 489 284547 - 284574 + F 71 -8 -3.52906 | opp_overlap 284547, overlap 284531 284545 AATTATATTAATAAA TTTAATTAGATT TTTA AGTCTAATTAAA TGTTTATAAAAATAG TERM 490 284703 - 284719 + F 78 -5.3 -5.43487 | overlap 284714 TAAAAATAAACGCCC TAAAAAT AAT ATTTTTA TTTTTTATATCATTT TERM 491 284843 - 284867 + F 84 -4.5 -6.3578 | opp_overlap 284837, overlap 284837 TTATACAAATATATC TTATATTTTTT ATA AAAAACTATAA TTTTTTTTTTAAAAT TERM 492 285303 - 285331 + G 100 -11.9 -4.14392 | overlap 285304 TCTCACTCCTGGATG TCTGATATAGCAC AAG GTGTTATATCAGG TTTTGGAAATTACGG TERM 493 285304 - 285330 + G 93 -13.2 -3.08314 | overlap 285303 CTCACTCCTGGATGT CTGATATAGCAC AAG GTGTTATATCAG GTTTTGGAAATTACG aroQ 284943 - 285401 + | 3-dehydroquinate dehydratase fis 285767 - 285441 - | DNA-bending protein rluD 286813 - 285849 - | RluD TERM 494 286551 - 286566 + g 71 -3.4 -5.47846 | opp_overlap 286551 AGAATCTTCAAAAAT TATATT TAAA AATATA TTTTCTTTTTTAATT TERM 495 287717 - 287707 - g 91 -2.6 -6.69613 | TTACAAAAAAAAAAA TAAT TAA ATTA CCAATTCCATCAATA TERM 496 287876 - 287864 - g 100 -4.9 -6.91736 | AATAAAAAAAAAAAA TAATG TTT CATTA AAAATAATTTCAGAT TERM 497 288088 - 288067 - g 75 -3.9 -5.6473 | gap 1, overlap 288072 ATAATATGAAAAAAA TGAATTATGA TTT TCATA-TTCA AGAAAAAATTCATAA TERM 498 288128 - 288097 - g 95 -7.6 -5.49234 | ATATTCAAGAAAAAA TTCATAAAATAAAA AAAA TATTATTTTATGAA GAAAAACAATTTTAT TERM 499 288219 - 288208 - g 74 -3 -5.7506 | TAAAAAAAAATAAAA TTTG TGAA CAAA AAATATTTACTTTAT TERM 500 288392 - 288353 - g 85 -3.2 -6.32976 | gap 1, opp_overlap 288360 288365, overlap 288365 AAAAAAACAAAAAAA TAAAG-AAAAAAAGAAAAA AAA TTTTTCTTTTATTACTTTT AAAAAAAAATCAATT TERM 501 288379 - 288365 - g 95 -5.8 -6.11392 | opp_overlap 288360 288365, overlap 288353 AAATAAAGAAAAAAA GAAAAA AAA TTTTTC TTTTATTACTTTTAA TERM 502 288365 - 288379 + G 74 -5.8 -4.89562 | opp_overlap 288365 288353, overlap 288360 AAATAAAGAAAAAAA GAAAAA AAA TTTTTC TTTTATTACTTTTAA TERM 503 288412 - 288402 - g 81 -4 -6.07627 | opp_overlap 288410 ACTTTTAAAAAAAAA TCAA TTT TTGA TGGCTATCATATCTA TERM 504 288645 - 288624 - g 73 -8.9 -2.66611 | opp_overlap 288628, overlap 288623 288626 288644 AAAAAATTTGATAAT TATATCCTA CATA TAGGATATA TAAAACATGGTTGTA TERM 505 288968 - 288958 - g 100 -2.6 -7.07835 | CAAAAAAAAAAAAAA TAAA ATT TTTA TTAGAAAAAAAATAT TERM 506 289265 - 289253 - g 71 -3.5 -5.35815 | TATAGTAAATAAAAA TAAAA AAC TTTTA GAAGAAAATATAAAA TERM 507 289666 - 289648 - g 95 -3.3 -6.82322 | overlap 289656 AAATAAAAAAAAAAA TTATTAA ATATA TTAATAA ATATAAATAATAATA alaS 287031 - 289676 + | hypothetical protein TERM 508 289757 - 289733 - f 80 -10.3 -2.71331 | opp_overlap 289733, overlap 289732 289731 GATTAAAAATAAATT TGTTTATATTA TTA TAATATAAACA TTTTTTTACAAAAAG TERM 509 289733 - 289757 + F 100 -10.3 -5.40072 | opp_overlap 289733 289732 289731 GATTAAAAATAAATT TGTTTATATTA TTA TAATATAAACA TTTTTTTACAAAAAG csrA 289786 - 289965 + | hypothetical protein TERM 510 290018 - 289981 - T 82 -7.3 -4.91852 | opp_overlap 289984, overlap 289983 TTTATTAAAAATAAA TTTTATTCTGTATTTTT AAAA AAAAATACAGAATATTA TATTTATAAAATAAA TERM 511 290016 - 289983 - T 80 -9.9 -2.71331 | opp_overlap 289984, overlap 289981 TATTAAAAATAAATT TTATTCTGTATTTTT AAAA AAAAATACAGAATAT TATATTTATAAAATA TERM 512 289984 - 290015 + T 100 -13.4 -3.90097 | opp_overlap 289983 289981 ATTAAAAATAAATTT TATTCTGTATTTTT AAAA AAAAATACAGAATA TTATATTTATAAAAT TERM 513 290048 - 290030 - T 70 -6.2 -4.45485 | opp_overlap 290021 290025 290030 290029 290030 290037, overlap 290019 290037 ATTATATTTATAAAA TAAAAATT TTA AATTTTTA AATTTTTTATTTATA zapA 290840 - 290550 - | ZapA rpiA 291539 - 290883 - | hypothetical protein TERM 514 291957 - 291967 + H 85 -2.6 -6.60239 | opp_overlap 291957, overlap 291932 TTTTTTTACAATAAA TATT TAT AATA TTTTTTTTTATTTTT TERM 515 292037 - 292012 - H 71 -7.9 -3.41454 | opp_overlap 292005 292003 292012 292018, overlap 292003 292002 292018 ATAAATTATTTATAA TATAAATATAA TTAC TTATATTTATA TTTATATTTAATTAT TERM 516 292012 - 292037 + H 80 -7.9 -4.41087 | opp_overlap 292003 292012 292002 292018, overlap 292005 292003 292018 ATAAATTATTTATAA TATAAATATAA TTAC TTATATTTATA TTTATATTTAATTAT glnS 292106 - 293755 + | glutaminyl-tRNA synthetase TERM 517 293793 - 293779 - f 84 -4.4 -6.3578 | opp_overlap 293779 ATTTTAAAAAAAAAA TTTTAT TAA ATAAAA TTAAATTTTCATTAA eno 293837 - 295135 + | hypothetical protein TERM 518 295131 - 295118 - f 72 -2.5 -6.13 | opp_overlap 295118 ACATTTAAAAAAAAA TTAAA TTTA TTTAA TTAGTTTAAAGATAA TERM 519 295218 - 295171 - f 93 -9.8 -4.42653 | gap 1, opp_overlap 295160 295164 295178 295187, overlap 295173 295174 295176 ATTTTATTTATAAAA TATTATATTTATTAAATAGAGAA GCA TTCTTTATTTAATAAATAT-ATA AAATTAAAAATATAG TERM 520 295217 - 295173 - f 89 -10.5 -3.82117 | opp_overlap 295164 295178 295187, overlap 295171 295174 295176 TTTATTTATAAAATA TTATATTTATTAAATAGAGAA GCA TTCTTTATTTAATAAATATAT AAAATTAAAAATATA TERM 521 295216 - 295174 - f 100 -14 -2.88788 | opp_overlap 295164 295178 295187, overlap 295173 295171 295176 TTATTTATAAAATAT TATATTTATTAAATAGAGAA GCA TTCTTTATTTAATAAATATA TAAAATTAAAAATAT TERM 522 295214 - 295176 - f 91 -12.2 -2.98789 | opp_overlap 295164 295178 295187, overlap 295174 295173 295171 ATTTATAAAATATTA TATTTATTAAATAGAGAA GCA TTCTTTATTTAATAAATA TATAAAATTAAAAAT TERM 523 295178 - 295212 + F 91 -12.6 -2.91681 | opp_overlap 295176 295174 295173 295171, overlap 295187 TTATAAAATATTATA TTTATTAAATAGAGAA GCA TTCTTTATTTAATAAA TATATAAAATTAAAA TERM 524 295320 - 295291 - g 73 -6.7 -4.34402 | TTGTTTATATCAAAA TTATTTTTCATTT ATAA AATTGAAAAATAA AAATGGATCTTCCAC TERM 525 295334 - 295324 - g 89 -5.4 -5.63236 | opp_overlap 295330 ATTGAAAAATAAAAA TGGA TCT TCCA CAGGAGTTTTGTATG TERM 526 295478 - 295468 - g 84 -4 -6.15717 | TAAATATAAAAAAAA TAGA ATT TCTA TGCCGAATGAACTTA TERM 527 296242 - 296232 - g 82 -2.6 -6.47228 | opp_overlap 296232 TAATTAAAAAAAAAA TATT TGC AATA TCTATATATGAAAAA TERM 528 296319 - 296309 - g 81 -5.4 -5.21506 | opp_overlap 296309, overlap 296285 ATAACAATAGAAAAA CATG AAA CATG GTGGTTTATTTATAA TERM 529 296551 - 296537 - g 78 -2.2 -6.17033 | AAAAAAAACAAAAAA TATCAA AAT TTAATA TATAAATATAAAAAA TERM 530 296824 - 296814 - g 87 -2.6 -6.67014 | AATTAAAAAAAAAAA TATT CAA AATA ACAAAAGAAAAATTT TERM 531 297291 - 297271 - g 87 -7.1 -5.28983 | overlap 297283 TTCAAAAGATAAAAA TTTAATAAA AGA TTTATTAAA AAATAAAGATATCCA polA 295241 - 297901 + | 5'-3' exonuclease domain-containing protein engB 298514 - 297906 - | EngB TERM 532 298598 - 298574 - H 72 -6 -4.77896 | opp_overlap 298576 GAATTAATTTAAAAA TATTTATTTT TATAT AAAATAAATA TAGTAATATACATTA TERM 533 298668 - 298646 - H 89 -8 -4.97957 | opp_overlap 298638 298644 298646, overlap 298638 TATATAATAATAAAA TTAATTTTTA ATT TAAAAATTAA TATTTTGAAAAAATT TERM 534 298646 - 298668 + H 73 -8 -3.64488 | opp_overlap 298638 298646, overlap 298638 298644 TATATAATAATAAAA TTAATTTTTA ATT TAAAAATTAA TATTTTGAAAAAATT TERM 535 299216 - 299241 + G 73 -9.1 -2.62184 | opp_overlap 299210 299207 299223 TATACATCAGCTTTA TTAGGAACTTC AGGG GAAGATCCTAA TAATATGCAGAAAAA TERM 536 299787 - 299756 - g 82 -8.2 -4.67038 | overlap 299739 299737 299760 TCTTTAAAAGTAAAA GAAACAAAAAATTC TAAT GTATTTTCTGTTTC TGGTAGAGGAGAATT typA 298730 - 300544 + | GTP-binding elongation factor family protein TERM 537 300611 - 300557 - T 77 -6.3 -4.99665 | gap 1, opp_overlap 300561 300571, overlap 300561 TAAAAAAAATTAAAA TAATTTATAAAAGAGAATCTTTATAT ACAA ATA-AAAGATTCTTTTTCATAATTTA AGCATATTAATAAAA ygfZ 301625 - 300651 - | YgfZ TERM 538 300708 - 300722 + g 76 -4.4 -5.33405 | opp_overlap 300706 300707 TAAATAAAAATTATT TTTTTT ATT AAAAAA TTTTTCTTTCATACG TERM 539 301067 - 301084 + g 91 -4.3 -6.62203 | AAGATATCCACTGTT TATTATT ACTA AATAATA TTTTTTTTTTATTAT TERM 540 301205 - 301233 + g 75 -6.3 -4.67353 | opp_overlap 301204 301223 TTTTTGTAACCATAT TTTTTTTTTTAAA ATG TATAAAAAAAAAA TTTTTCAATAAATAA TERM 541 301703 - 301661 - H 70 -3.8 -5.63857 | opp_overlap 301653 301662 301669 301677 301692 301694 301696, overlap 301653 301662 301669 AAAAATCTAAAAAAA TTTTATAATATATTTATATT ATA AATATATTTATATTATATAA TAATATTTTATAAAA TERM 542 301669 - 301689 + H 71 -7.1 -4.31766 | opp_overlap 301662 301669 301661, overlap 301662 301677 AAAAAAATTTTATAA TATATTTAT ATT ATAAATATA TTTATATTATATAAT TERM 543 301899 - 301882 - g 95 -4.3 -6.72663 | overlap 301895 ATATAAAAAAAAAAA TAAAATT AATA AATTTTA AAATAAAAAAACTTT TERM 544 301925 - 301911 - g 74 -2.2 -6.09196 | overlap 301903 301912 TTTAAAATAAAAAAA CTTTTT AAA AAAAAA AAATTTAAAAAAATA TERM 545 301983 - 301964 - g 95 -3 -6.72663 | opp_overlap 301967 301968, overlap 301967 301968 ATATAAAAAAAAAAA CAATTTTT TAAA AAAAATTA ATATATTTAAAAAAT TERM 546 302130 - 302110 - g 75 -4.1 -5.55001 | opp_overlap 302110 302112, overlap 302129 CAATAAAAAATAAAA TATATGTTT TGG AATCATATA TGATGTTTAATCATA prfB 301781 - 302879 + | hypothetical protein TERM 547 303050 - 303032 - g 84 -4 -6.11392 | opp_overlap 303032 AAAGAAATAAAAAAA TTATATAA TAA TTATACAA AAAAAGAATTAGAAA lysS 302882 - 304390 + | hypothetical protein TERM 548 304401 - 304386 - f 72 -3.4 -5.86061 | opp_overlap 304374 304386, overlap 304393 CTTTATTAAAAAAAA TTTAAT ATTA ATTAAA TTAAATTAAATAAAT TERM 549 304560 - 304543 - g 75 -4.3 -5.55769 | GCTTACAAGAAAAAA TTTATTA TTTT TAATAAA AAAATATAAAACTCC TERM 550 305553 - 305539 - g 85 -2.9 -6.41881 | overlap 305544 305545 TACAATAAAAAAAAA TGAAA TTATT TTTCA TAGAAAAATACCACA lysA 304496 - 305746 + | diaminopimelate decarboxylase TERM 551 305780 - 305760 - f 72 -2.7 -6.00814 | overlap 305762 305766 305775 AATAACTAAAAAAAA TATAAATAA ATA TTATTTAAA AGTTAAAAATTATTT TERM 552 305934 - 305921 - g 74 -3.1 -5.73339 | opp_overlap 305922, overlap 305922 ATAATTACAAAAAAA CCAGA AATA TCTGA TATTTTAATTTTAAA TERM 553 306271 - 306238 - g 73 -4.1 -5.50774 | TACAATAAATAAAAA TACAAATATAAAAAA AAAA TTTTCTTCATTTGTA ACTATTATGGAAGGA miaB 305849 - 307156 + | hypothetical protein TERM 554 307292 - 307246 - g 93 -8.4 -5.10461 | opp_overlap 307246 307246, overlap 307270 307272 307291 TGTATGTAAGAAAAA TATTTTTTTTCCAAAAAAAAAA TAT TTTTTTTTATGGTTAAAAAATA TTTTTAAAAATAAAA TERM 555 307246 - 307292 + G 86 -8.4 -4.59773 | opp_overlap 307246 307270 307272 307291, overlap 307246 TGTATGTAAGAAAAA TATTTTTTTTCCAAAAAAAAAA TAT TTTTTTTTATGGTTAAAAAATA TTTTTAAAAATAAAA TERM 556 307246 - 307269 + G 100 -7 -6.2845 | opp_overlap 307246, overlap 307246 TGTATGTAAGAAAAA TATTTTTTTT CCAA AAAAAAAATA TTTTTTTTTATGGTT ybeY 307190 - 307660 + | YbeY TERM 557 307800 - 307784 - g 87 -2.4 -6.58542 | overlap 307788 307799 GGGTAAAAAAAAAAA TATTTT TTACT AAAATA GATAAAGAAAAAAAA TERM 558 308399 - 308382 - g 82 -7.1 -4.87665 | TTCTATGCAGAAAAA TTGGATT GGAA AATCCAA AGGATTAAAAATAAA TERM 559 308451 - 308437 - g 91 -4.4 -6.32216 | opp_overlap 308437, overlap 308427 ATATATAAAAAAAAA TATTTT TTA AAAATA TTTACAACAAAACCA TERM 560 310090 - 310074 - g 70 -4.5 -5.07652 | TTTTTTAAAAGAAAA GAACAAT ATA ATTATTC AAATTAATGGAAAAA leuS 307714 - 310257 + | LeuS TERM 561 310787 - 310774 - g 95 -3.9 -6.82322 | AAATAAAAAAAAAAA TTCTT ATTA AAGAA AATGCAAAAAAAATT TERM 562 310844 - 310801 - g 86 -5 -5.91981 | opp_overlap 310802 310833, overlap 310802 AAAATGCAAAAAAAA TTTTATTAAAAAAAAAATAT AGAA ATATTTCTTTTTTTATAAAT TTTTTAAAAAATATT TERM 563 310843 - 310802 - g 80 -8.5 -4.11528 | opp_overlap 310802 310833, overlap 310801 AAATGCAAAAAAAAT TTTATTAAAAAAAAAATAT AGAA ATATTTCTTTTTTTATAAA TTTTTTAAAAAATAT TERM 564 310802 - 310843 + G 81 -6.3 -5.02476 | opp_overlap 310802 310801, overlap 310833 AAATGCAAAAAAAAT TTTATTAAAAAAAAAATAT AGAA ATATTTCTTTTTTTATAAA TTTTTTAAAAAATAT TERM 565 311177 - 311143 - g 79 -2.4 -6.25578 | overlap 311134 311147 ATCAAATAAAAAAAA TATATTTATCTTTTTT AAT AAAAATAAAAAATATA AAAACAATACAATTA holA 310302 - 311294 + | DNA polymerase III, d subunit TERM 566 311330 - 311284 - f 83 -10.9 -2.79291 | gap 1, opp_overlap 311281 311300 311306, overlap 311281 311303 311306 AAACTTTATCAATTA TTTTTAATTAAATATT-TAATA ATAT TATTATAATATTTAATTAAAAA AGATTAATTACATAA yhhP 311350 - 311586 + | YhhP asd 312707 - 311592 - | aspartate-semialdehyde dehydrogenase TERM 567 312070 - 312091 + g 85 -3.1 -6.38655 | opp_overlap 312067 TTTTTAGGACAATTT TTACTATTT AATA AAAAAGTAA TTTTTTTTTCTATTT TERM 568 312415 - 312380 - G 74 -7 -3.97511 | overlap 312381 GATCTAAGACAATAA TTGCATCTTCTTTCAT TCTT AAAAAAGAAGATGCAT CAATCCAATATCCTT TERM 569 312414 - 312381 - G 83 -10.5 -2.97784 | overlap 312380 ATCTAAGACAATAAT TGCATCTTCTTTCAT TCTT AAAAAAGAAGATGCA TCAATCCAATATCCT TERM 570 313144 - 313121 - g 70 -4 -5.19212 | gap 1, opp_overlap 313105 313102 313125, overlap 313107 313125 ATTAGCATTAAAAAA GAATGCTAAAA TAA TCTTAGC-TTC TCATTTAGGAAGACC TERM 571 313966 - 313954 - g 70 -4.9 -4.77925 | opp_overlap 313954 313948 AAAAAATTTCAAAAA CTATT GCA AATAG TAATTGTTTTTCTGT pgk 312981 - 314132 + | hypothetical protein TERM 572 314588 - 314574 - g 70 -4.4 -5.0538 | TCTTATGGTAAAAAA TTTTTT AAA AAAAAA AAACGTCCGTTATTT fba 314190 - 315266 + | fructose-bisphosphate aldolase TERM 573 315443 - 315405 - f 100 -15.2 -3.24122 | opp_overlap 315413, overlap 315396 315395 315409 315413 AAAAATTTAATTTAA TTAATAAATATTTTTATA ATT TATAAAAATATTTATTAA AATTAAAAATTAAAA TERM 574 315439 - 315409 - f 90 -11.6 -3.40788 | opp_overlap 315413, overlap 315405 315395 315413 ATTTAATTTAATTAA TAAATATTTTTATA ATT TATAAAAATATTTA TTAAAATTAAAAATT TERM 575 315435 - 315413 - f 79 -8 -4.34223 | opp_overlap 315413, overlap 315409 315405 315395 AATTTAATTAATAAA TATTTTTATA ATT TATAAAAATA TTTATTAAAATTAAA TERM 576 315413 - 315435 + F 79 -8 -4.20918 | opp_overlap 315413 315409 315405 315395 AATTTAATTAATAAA TATTTTTATA ATT TATAAAAATA TTTATTAAAATTAAA TERM 577 315490 - 315476 - g 89 -4.4 -6.17292 | AAATGCAAAAAAAAA TTTTTA TTA TAAAAA AAATAATTGATCAAT TERM 578 315507 - 315494 - g 75 -2.5 -5.9873 | opp_overlap 315505, overlap 315505 TTATTATAAAAAAAA TAATT GATC AATTA AATATTAATAATTAT yggB 315463 - 316371 + | YggB TERM 579 316402 - 316438 + F 100 -9.1 -4.8048 | opp_overlap 316402 316411 TTAATACTTACTTAA TCTATAATATAGAATTT TCT AATTTTTATATTATAGA TTTTTAATATAAAAA TERM 580 316723 - 316703 - g 82 -2.7 -6.35605 | opp_overlap 316717, overlap 316717 CAATATAAAAAAAAA TAAAAAATT AAT AATTTTTGA AAAAAAATACTTACA TERM 581 317281 - 317260 - g 75 -6.1 -4.59591 | opp_overlap 317266 317271 317273, overlap 317271 317273 AAGAAAACATTAAAA TAAAAAAAA AATA TTTTTTTTA TAAAAATAATAAAAA TERM 582 317289 - 317271 - g 95 -3.3 -6.71862 | opp_overlap 317271 317266 317273, overlap 317260 317273 AAAATAAAAAAAAAA TATTTTT TTTAT AAAAATA ATAAAAAAAAAATTT TERM 583 317299 - 317273 - g 74 -5.4 -4.91158 | opp_overlap 317273 317271 317266, overlap 317260 317271 AATAAAAAAAAAATA TTTTTTTTATAA AAA TAATAAAAAAAA AATTTTATCTTATTT TERM 584 317506 - 317481 - g 71 -3.3 -5.64328 | opp_overlap 317481 AACAAAAAAATAAAA CTTGATGATAT TTTA ATAACAGCAAG TAATATAGATATTTA TERM 585 317844 - 317827 - g 79 -7.1 -4.65895 | TTCCTGATTTAAAAA CATATTC ATGG GAATATG CAATTAAAAGAATAA TERM 586 318096 - 318078 - g 77 -3.2 -6.06529 | opp_overlap 318069 318058 318088, overlap 318058 TATATAGAAAAAAAA GATAAAAA ATT TTTTTTTC TATTAAAAAATATAT TERM 587 318342 - 318319 - g 75 -4 -5.60689 | opp_overlap 318319 GTACACAAGAAAAAA TATCTTTATT TAAT AATCAAGATA TATTAAATTTAATAG TERM 588 318568 - 318547 - g 100 -3.9 -6.91736 | overlap 318560 AAGAAAAAAAAAAAA TTCAAAAAA AAAA TTTTTTAAA TAAAATTTATAAAAA TERM 589 318582 - 318560 - g 87 -3.6 -6.40073 | overlap 318547 AATTCAAAAAAAAAA TTTTTTAAAT AAA ATTTATAAAA AAAATAAAAATAATA TERM 590 318603 - 318593 - g 75 -2.6 -5.94743 | opp_overlap 318593, overlap 318601 TAAAAAAAATAAAAA TAAT ATA ATTA ATTCTCTTTTTTCAA TERM 591 318625 - 318605 - g 85 -9.9 -3.59079 | overlap 318601 AAATAATATAATTAA TTCTCTTTT TTC AAAAGAGAA AAAAAAAATCATTAA TERM 592 319481 - 319463 - g 90 -3.3 -6.50115 | overlap 319465 319480 AGGAGAAAAAAAAAA TATTTTT ATAAA AAAAATA ATACCTATATTAAAC TERM 593 319493 - 319480 - g 75 -2.5 -5.93809 | overlap 319463 TTTTTATAAAAAAAA TAATA CCTA TATTA AACAAAAATCTAATA recC 316461 - 319589 + | RecC TERM 594 320235 - 320221 - g 71 -2.2 -5.77734 | overlap 320231 AAATAAAAATAAAAA TAAAAC ACG ATTTTA AAAAAAAAAGTTCAT TERM 595 320343 - 320331 - g 76 -3.5 -5.79635 | AAAAAAAAAATAAAA TTTTT GAT AAAAA AAATATATTTAAATA TERM 596 320503 - 320523 + G 88 -4.2 -6.41881 | opp_overlap 320480, overlap 320482 320511 320516 AAAAAGAATATCTAT TTTTTTTA TATAT TAAAAAAA TTTTTTTTTATTATA TERM 597 320878 - 320856 - g 71 -8 -3.32895 | overlap 320846 320852 320854 AGAAATTCAAATATA TTTTTATATT TAA AATATAAAAA AAAAATACAAAAATG TERM 598 320919 - 320884 - g 87 -2.8 -6.56554 | opp_overlap 320894 320895, overlap 320886 AATATAAAAAAAAAA TACAAAAATGTTTTTT TTTA AAAAAAAATTTTCGTT CATCAATTAATATGA TERM 599 320917 - 320886 - g 74 -5.4 -4.88107 | opp_overlap 320894 320895, overlap 320884 TATAAAAAAAAAATA CAAAAATGTTTTTT TTTA AAAAAAAATTTTCG TTCATCAATTAATAT TERM 600 322145 - 322131 - g 100 -2.2 -6.95634 | GGAAAAAAAAAAAAA TTTAAA AAT TTCAAA AAAAATTTATATGAT TERM 601 322229 - 322215 - g 100 -4.4 -6.50278 | overlap 322204 AAAGTAAAAAAAAAA TTTTTT AAA AAAAAA AAAAGAAAAAAAAAA TERM 602 322413 - 322432 + G 76 -9.4 -2.8005 | overlap 322412 CAGATTAATCTCCAC TCTTTTCC ATTA GGAAAAGA ATTTGGAATCTATTT TERM 603 322706 - 322689 - g 73 -4.3 -5.34055 | opp_overlap 322681, overlap 322681 ATAAATATTAAAAAA TTTAATT TAAT AATTAAA AAATTTGATCCTATA TERM 604 322726 - 322710 - g 71 -3.8 -5.37865 | TTAATAATTAAAAAA TTTGAT CCTAT ATCAAA AAAATGTAGTAATAT TERM 605 322741 - 322753 + G 71 -3.5 -5.46629 | opp_overlap 322741 AAAAATGTAGTAATA TTTTT TAT AAAAA TTTTTTTGGAATATT recB 319605 - 323108 + | hypothetical protein TERM 606 323929 - 323957 + G 72 -7.5 -3.727 | opp_overlap 323922 323925, overlap 323922 AAAAAAATTGATATT CTTATCATTGATG AAT CATCTATGATTAG TTTAAATATAATGGA TERM 607 324016 - 324002 - g 100 -5.8 -6.69613 | GTATAAAAAAAAAAA CAAAAA TAA TTTTTG TTGGAGATGTATATC TERM 608 324130 - 324110 - g 100 -4.2 -6.91736 | opp_overlap 324098 324110 324110 AAGAAAAAAAAAAAA TTTTTTTT GTATT AAAAAAAA ATTATAGATTTAATA recD 323110 - 324891 + | hypothetical protein TERM 609 325042 - 325015 - f 70 -5.8 -4.71418 | overlap 325018 AATATTTAAAATAAA CAATATTTTTAT AAAA ATAAAAATATAG AATACAAAAGAACAA nusB 325171 - 325599 + | hypothetical protein TERM 610 325918 - 325940 + T 74 -8 -3.95036 | opp_overlap 325933, overlap 325918 AATTAATAATAATTG TTTTTAAAAA AAA TTTTTAAAAA TTATTTAAACTCATT cyoE 326854 - 325934 - | CyoE TERM 611 326490 - 326475 - GT 71 -3.4 -5.37043 | opp_overlap 326468 ATTGTACATAAAAAA TTTATA TATA TATAAA AAACTAACAAGCCTA TERM 612 326558 - 326534 - GT 95 -3.8 -6.56554 | AATAGAAAAAAAAAA TAATATTTTT AATAA AAAAACATTA GTATTTATACATAAA cyoD 327150 - 326827 - | CyoD TERM 613 327106 - 327091 - GR 74 -3.4 -5.61689 | overlap 327084 327093 AAAACCAATAAAAAA TTTTTT CTTT AAAAAA ATAAAAATAATATCT cyoC 327772 - 327188 - | CyoC TERM 614 327272 - 327258 - G 76 -7.2 -4.30308 | opp_overlap 327260 CAAAACAAACAACAA CATATC AAT GATATG TATAAAAAATTAGAG TERM 615 327741 - 327757 + g 74 -3.7 -5.66229 | opp_overlap 327744, overlap 327744 TTATTTTTTAGTGAA GAATATG AAA CATAATC TTTTTTATTATTCAT cyoB 329793 - 327820 - | CyoB TERM 616 328900 - 328867 - G 75 -9.1 -3.04231 | opp_overlap 328868, overlap 328864 328880 ATATCCAAATAATGA TTTTTCTGAAAATGT TGAA ACAACTTCAGAAAAA ATACCAAATATAGGT cyoA 330729 - 329851 - | CyoA bolA 331217 - 331516 + | BolA TERM 617 331700 - 331680 - f 100 -7.1 -6.28967 | opp_overlap 331662 331679 331680, overlap 331662 TATAAATAAAAAAAA TTTATATTA ATT TAATATAAA CATTTTTTAAAGAGA TERM 618 332218 - 332202 - g 85 -3.1 -6.47325 | opp_overlap 332202 AAAAAATAAAAAAAA TAATAAA TAA CTTATTA TCTTATCATACCAAA clpP 331724 - 332326 + | hypothetical protein TERM 619 333162 - 333139 - g 73 -4.8 -5.1356 | TTGGATTAACAAAAA TTTTATCTAA TCGT TTAAATAAAA CATCTAATATTGGAT TERM 620 333624 - 333600 - g 71 -6.7 -4.09864 | ATTCATCCGCCAAAA TTATTTTTTTT AAA AAAAAAAACAA AAAAAAATAATATAT clpX 332379 - 333641 + | ATP-dependent protease ATP-binding subunit TERM 621 333652 - 333632 - f 85 -2.7 -6.60239 | opp_overlap 333637, overlap 333637 AAAAACAAAAAAAAA TAATATATA AAT TTTATATTA TATCAATGTATAAAA TERM 622 334202 - 334191 - g 77 -3 -6.01187 | AATTAAATAAAAAAA TTTC ATTA GAAA CATTAGATAAATTAA TERM 623 335733 - 335719 - g 85 -4.4 -5.9663 | opp_overlap 335719, overlap 335710 335707 AAATATTAAAAAAAA TTTTTA TAA TAAAAA TGATATACATATACA lon 333749 - 336097 + | DNA-binding ATP-dependent protease La TERM 624 336138 - 336114 - f 72 -4.4 -5.4756 | AATGTGAAGAAAAAA TTGAATAAAG TTTAT CTTTATACAA CTTAGCTAGTTAGAA TERM 625 336174 - 336139 - f 86 -10.6 -3.49475 | opp_overlap 336151 TTTATCTTTATACAA CTTAGCTAGTTAGAAT ACAT ATTCTTACTAGCTATG AAAATTCTATTTTAT TERM 626 336881 - 336865 - f 72 -5.3 -5.1517 | opp_overlap 336865 336873, overlap 336873 336875 AAAATAAATCAAAAA TAAAAAA ATA TTTTTTA TTAAATAAAAAAAAA TERM 627 336895 - 336873 - f 81 -3.6 -6.20267 | opp_overlap 336865 336873, overlap 336865 336875 TCAAAAATAAAAAAA TATTTTTTAT TAA ATAAAAAAAA ATTTTATTACCCAGA TERM 628 336893 - 336875 - f 73 -6.2 -4.70159 | opp_overlap 336865 336873, overlap 336865 336873 AAAAATAAAAAAATA TTTTTTAT TAA ATAAAAAA AAATTTTATTACCCA TERM 629 337239 - 337255 + F 89 -5.3 -5.97575 | opp_overlap 337234 GAAAATAATATTTTA TAAAAAA AAT TTTTTTA TTTTTTTTCTAGATT TERM 630 337353 - 337331 - f 81 -3.6 -6.25741 | opp_overlap 337347 337348, overlap 337347 AAATAATAAAAAAAA TAAAAAATAA TAA TTATTTTTTT GAAAAAAAATTTTTT TERM 631 337543 - 337528 - f 83 -3.4 -6.53504 | opp_overlap 337529, overlap 337529 TATATAAAAAAAAAA TTTTTT TTAT AAAAAA TCTATTCAAAATAAT TERM 632 337719 - 337706 - f 79 -2.5 -6.47325 | overlap 337710 AAAAAACAAAAAAAA TTATT TAAA AATAA AAGATTTCTTTTTAA TERM 633 337770 - 337758 - f 95 -3.5 -6.67014 | opp_overlap 337758 337758 337762 AATCAAAAAAAAAAA TTTTT ACA AAAAA ATTCTGTATATTTAT TERM 634 338873 - 338843 - g 86 -5 -6.02919 | overlap 338835 TCAGAAATAAAAAAA TTTTCTTTAATAAA TAA TTTAGTAAAAAAAA AAGATTTTCAAGTAT TERM 635 339207 - 339195 - g 74 -3.5 -5.63236 | opp_overlap 339195 ATTTAAAAATAAAAA TAAAA AAA TTTTA TTATCCAAATAGAAA mdlA 338177 - 339901 + | ABC transporter ATP-binding protein TERM 636 340627 - 340611 - g 79 -2.4 -6.15536 | opp_overlap 340611 AATCAAGAAAAAAAA TTTATT AAAAA AATAAA TAATATTAATAATAA TERM 637 341172 - 341156 - g 71 -6.7 -4.12421 | opp_overlap 341158 TAATAAAAAAATTAA TACAATT TCA AATTGTA CATTACGAAAAAATG mdlB 339933 - 341687 + | ABC transporter ATP-binding protein TERM 638 342206 - 342190 - g 72 -8.1 -3.51365 | TTAGATTTTATAGAA TTAGATG CAG CATCTAA AACTAAAGTAGATGA TERM 639 342542 - 342514 - g 100 -9.1 -5.56112 | opp_overlap 342527 342530, overlap 342527 342528 342530 ATAAAAATTAAAAAA GAAGCATTAAAAA TTA TTTCTAATACTTC TCAAGGTAGTATTAG TERM 640 342560 - 342530 - g 74 -8.5 -3.30145 | opp_overlap 342527 342530, overlap 342514 342528 342527 AAGCATTAAAAATTA TTTCTAATACTTC TCAAG GTAGTATTAGAAA TGCTTTAAATACTCT TERM 641 342530 - 342560 + G 74 -9.2 -2.95384 | opp_overlap 342514 342530 342528 342527, overlap 342527 AAGCATTAAAAATTA TTTCTAATACTTCT CAA GGTAGTATTAGAAA TGCTTTAAATACTCT TERM 642 342970 - 342991 + G 70 -7.5 -3.45231 | overlap 342968 AGTCCTAAAATTGGA TTTGAAATA ATGT TATTTCAAA TATTTCAGTATATAA dnaX 341914 - 343020 + | DNA polymerase III, g and t subunits TERM 643 343048 - 343018 - f 100 -5.8 -6.37666 | opp_overlap 343021 ATAAAAGAAAAAAAA TAATTATTTTAT ATAATTA ATAAAATAATTA ATGAAACTAATAAAA ybaB 343124 - 343432 + | hypothetical protein TERM 644 344061 - 344037 - g 71 -7.3 -3.88998 | overlap 344035 344052 AGGTAAAGGAAAATA TTCTGTAGAAA AAA TTTCTAAAGAA GAACATGGAACAATA TERM 645 344227 - 344207 - g 72 -2.7 -5.77571 | overlap 344201 344210 ACGAAAAAACAAAAA CAATTTCTT GGG AAAAAATTA ACAAAGCACAAGCAT TERM 646 345395 - 345379 - g 71 -6.7 -4.12901 | opp_overlap 345378 GAAAATCCACATAAA TTTATTC AAA GAATAAA CAATTTCTTTATATC htpG 343540 - 345414 + | heat shock protein 90 TERM 647 346124 - 346106 - g 100 -6.2 -5.95539 | opp_overlap 346094 TTGTAAATAAAAAAA TTATTTAT AAT ATAAATAA TAATAATATAAATAA adk 345493 - 346143 + | hypothetical protein TERM 648 346352 - 346332 - f 74 -4.1 -5.66229 | overlap 346325 346334 ATTAATAATAAAAAA TATTTCTAT AAA ATAGAAAGA AAAAAATTAGGTTAT TERM 649 346350 - 346334 - f 74 -6.7 -4.45127 | overlap 346325 346332 TAATAATAAAAAATA TTTCTAT AAA ATAGAAA GAAAAAAATTAGGTT folD 346377 - 347231 + | 5,10-methylene-tetrahydrofolate dehydrogenase cysS 348672 - 347242 - | hypothetical protein TERM 650 347466 - 347435 - G 75 -2.4 -6.06723 | opp_overlap 347436, overlap 347436 TCTTTTAAAAAAAAA TTTTTAGGATCATT TTGA AATAAACCTAAAAT TTTTCCTAAATAAAC TERM 651 347465 - 347436 - G 71 -5.9 -4.22949 | opp_overlap 347436, overlap 347435 CTTTTAAAAAAAAAT TTTTAGGATCATT TTGA AATAAACCTAAAA TTTTTCCTAAATAAA TERM 652 348781 - 348752 - H 79 -6.8 -4.84529 | opp_overlap 348755, overlap 348744 GTAGAAATTTAAAAA TATTTAAAAAAA TTTAAT TTTTTTTAAATA AAATTATATAATTTT ybeD 348866 - 349129 + | hypothetical protein TERM 653 349171 - 349136 - T 100 -12.7 -4.13995 | GTTTTATAAATTAAA TTTGCGATGCGGTAT CATAAT ATTCCGCACCGCAAA AGTACTACTAAATCA cspE 349427 - 349218 - | cold shock protein CspE TERM 654 349528 - 349492 - R 74 -9.1 -3.01405 | overlap 349485 349494 349505 ATAATATATTATACA TAGTAATAAAATATTTT ACT AAAAAATCTTATTACTA AAAATAATTAAATTA TERM 655 349762 - 349752 - R 79 -6.8 -4.82901 | opp_overlap 349752 TTTTTTTTAGAAAAA CACC TCT GGTG TTGTAAGGTCAAGCC TERM 656 349871 - 349859 - R 70 -7.7 -3.80733 | CGTAGTCTACAACAA CCCTT CAG AAGGG TGAAAAAAACATCAC TERM 657 351398 - 351414 + r 76 -8 -4.08546 | TTGGTCTTTCGGCGA GCAGGT TTTTC ACCTGC TTTATCGTTACTCAT aroE 353875 - 353033 - | hypothetical protein def 354044 - 354493 + | hypothetical protein TERM 658 354559 - 354545 - g 100 -5.8 -6.58542 | opp_overlap 354554 354557 TGTTAAAAAAAAAAA CAAAAA TAA TTTTTG CTGGAAGCGATAAAT fmt 354529 - 355485 + | hypothetical protein TERM 659 355547 - 355526 - T 95 -7.3 -5.75342 | opp_overlap 355529, overlap 355529 TTTTTTTAAAAAAAA GAACGGCAT AAAA ATGCCGTTT TTATTTAACTAATAT TERM 660 355529 - 355544 + T 100 -9 -5.30616 | opp_overlap 355526 355529 TTTTAAAAAAAAGAA CGGCAT AAAA ATGCCG TTTTTATTTAACTAA TERM 661 355544 - 355529 - T 100 -9 -4.96028 | opp_overlap 355529, overlap 355526 TTTTAAAAAAAAGAA CGGCAT AAAA ATGCCG TTTTTATTTAACTAA rplQ 355960 - 355598 - | 50S ribosomal protein L17 rpoA 356977 - 355988 - | DNA-directed RNA polymerase subunit alpha rpsD 357631 - 357011 - | 30S ribosomal protein S4 rpsK 358057 - 357665 - | 30S ribosomal protein S11 rpsM 358435 - 358076 - | 30S ribosomal protein S13 TERM 662 358491 - 358467 - R 100 -10.3 -4.58303 | opp_overlap 358466 358465 358473, overlap 358488 GTAAATAGCATAAAA TATATACATTT AAA AAATGTATATA AAATTTTTTATAATA rpmJ 358651 - 358535 - | 50S ribosomal protein L36 secY 359982 - 358687 - | hypothetical protein TERM 663 359053 - 359038 - G 87 -3.4 -6.32976 | opp_overlap 359041, overlap 359041 359052 AAAAAAACAAAAAAA TATTAT TAAG ATAATA TTTACAATTAAATAA TERM 664 359876 - 359866 - G 72 -2.6 -5.72622 | opp_overlap 359866, overlap 359859 TTTATAAATAAAAAA TTTT TCT AAAA CTTGTATGTTAATAC rplO 360468 - 360031 - | 50S ribosomal protein L15 rpmD 360653 - 360480 - | 50S ribosomal subunit protein L30 rpsE 361172 - 360678 - | 30S ribosomal protein S5 TERM 665 361102 - 361070 - G 79 -10.1 -2.88032 | opp_overlap 361070, overlap 361069 361072 361078 CAACAACAGTTAAAG CAGTAAAAGAAAAAA TTC TTCCTCCTTTTACTG TCTTAGAAACTCTAT rplR 361559 - 361191 - | 50S ribosomal protein L18 TERM 666 361267 - 361285 + g 72 -7.6 -3.61468 | TTAAAGCCTGATCTA TCAAAAAA TAC TTTTTTGA TTCCTTTGATTAAAG rplF 362100 - 361561 - | 50S ribosomal protein L6 TERM 667 361978 - 361993 + g 85 -4.8 -6.09133 | CTTTTTTATAATTTT TATACA TTTA TGTATA TTTTTTTTTAAAATA rpsH 362530 - 362138 - | 30S ribosomal protein S8 rpsN 362889 - 362584 - | 30S ribosomal protein S14 rplE 363447 - 362908 - | 50S ribosomal protein L5 rplX 363783 - 363466 - | 50S ribosomal protein L24 rplN 364176 - 363805 - | 50S ribosomal protein L14 rpsQ 364569 - 364315 - | 30S ribosomal protein S17 rpmC 364763 - 364566 - | 50S ribosomal protein L29 rplP 365176 - 364766 - | 50S ribosomal protein L16 rpsC 365905 - 365198 - | 30S ribosomal protein S3 rplV 366257 - 365883 - | 50S ribosomal protein L22 TERM 668 366082 - 366101 + g 87 -9.4 -4.46432 | overlap 366073 TAACCATAATTATGT TCAGCATT AGAT AATGCTGA TTTTAATAATTTTTT rpsS 366559 - 366275 - | 30S ribosomal protein S19 rplB 367400 - 366579 - | 50S ribosomal protein L2 TERM 669 366840 - 366850 + g 70 -4 -5.1963 | opp_overlap 366840 366847 TATAGTAGCACGACA TTCA ATA TGAA TTTTTCTTAATTCAC TERM 670 366986 - 366997 + g 89 -4.4 -6.13503 | TATTATGTAGAATTG TTCC AATA GGAA TTTTTTTTATTGGTA rplW 367722 - 367420 - | 50S ribosomal protein L23 rplD 368324 - 367719 - | 50S ribosomal protein L4 rplC 368971 - 368345 - | 50S ribosomal protein L3 rpsJ 369333 - 369022 - | 30S ribosomal protein S10 TERM 671 369395 - 369423 + r 71 -7.8 -3.48276 | opp_overlap 369393 369395 TACATGTCAAAAATA TTTTTTTAATAA GTTAA TTATTAAAAAAA TTATGTCAAGAAAAG TERM 672 369423 - 369395 - R 74 -7.8 -3.93817 | opp_overlap 369395, overlap 369393 TACATGTCAAAAATA TTTTTTTAATAA GTTAA TTATTAAAAAAA TTATGTCAAGAAAAG TERM 673 369462 - 369424 - R 93 -6.8 -5.58074 | opp_overlap 369424, overlap 369393 369427 TAATTATTAAAAAAA TTATGTCAAGAAAAGAGA AAA CCTCTAATCTTGACAAAA TATTAAAATATTGAT TERM 674 369459 - 369427 - R 74 -8.5 -3.53247 | opp_overlap 369424, overlap 369424 TTATTAAAAAAATTA TGTCAAGAAAAGAGA AAA CCTCTAATCTTGACA AAATATTAAAATATT tuf 370685 - 369501 - | elongation factor Tu fusA 372854 - 370749 - | hypothetical protein TERM 675 371619 - 371629 + g 81 -5.4 -5.24129 | TGAAATTACTGGTTC TGGA AAA TCCA TTTTTTCTAAAACAA rpsG 373403 - 372933 - | 30S ribosomal protein S7 rpsL 373798 - 373424 - | 30S ribosomal protein S12 yheL 374178 - 373885 - | YheL yheM 374550 - 374191 - | YheM yheN 374965 - 374573 - | YheN TERM 676 374868 - 374844 - G 100 -13.1 -3.59024 | opp_overlap 374842 TTATAAATACCAGAA GCGTAAAAAAA AAC TTTTTTTACGC GATAATTTAATAAAA TERM 677 374975 - 374989 + r 72 -4.4 -5.41746 | overlap 374976 ATTCATAAATAGCCA TTTTTT TAA AAAAAA TTTTTTTAAAAAATT TERM 678 374976 - 375002 + r 90 -9.8 -3.98804 | opp_overlap 374990, overlap 374975 374993 TTCATAAATAGCCAT TTTTTTAAAAAA AAT TTTTTTAAAAAA TTATTTAAAATTTAA TERM 679 375002 - 374990 - R 70 -3.5 -5.75342 | opp_overlap 374976 374993 TTTTTTTAAAAAAAA TTTTT TTA AAAAA TTATTTAAAATTTAA TERM 680 375044 - 375030 - R 74 -5.8 -5.08483 | opp_overlap 375029 375033, overlap 375021 375025 TAAAACTAAATAAAA TACTTA TTT TAAGTA ATAAATTTATATAAA TERM 681 375099 - 375087 - R 70 -3.5 -5.67063 | TTTATCATAAAAAAA TTATT TTT AATAA ACAAAAAATACATTG trpS 376272 - 375256 - | hypothetical protein TERM 682 376169 - 376140 - G 80 -8.9 -3.72363 | opp_overlap 376142 CATGTAAATCTGAAA TACAAAAAAAACA TTTA TATTTTTTTTGTA AATTATACCAATTAC rpe 376989 - 376327 - | hypothetical protein TERM 683 377016 - 377045 + r 77 -4.7 -5.60993 | gap 1, opp_overlap 377029 377044 AAAATATTTATTTAT TATTTTTAACAAAT TTT ATTT-TTAAAAATA TTTTTTTCTCAAAAA aroB 378201 - 377098 - | 3-dehydroquinate synthase TERM 684 377768 - 377732 - G 71 -5.4 -4.56597 | opp_overlap 377739, overlap 377713 377712 377739 TTTGGTTGCCAAAAA GAACCAATCATATTTT TACCT AAAATATGATTTACTC CTGTTTTTCCACCAA TERM 685 378015 - 378037 + g 79 -5 -5.38549 | opp_overlap 378005 378021, overlap 378026 AATAATGAATTTTAT TCAAGATTTT ATA AAAATATTGA TTTTTATTCTTTAAA aroK 378800 - 378261 - | hypothetical protein yhgI 379744 - 379163 - | GNT I transport systemmembrane-bound protein TERM 686 380218 - 380205 - g 79 -2.5 -6.28401 | GAAAAAAGAAAAAAA TATTT AAAA AAATA AAAAATGATATAATT TERM 687 380338 - 380321 - g 74 -2.1 -6.09133 | opp_overlap 380326, overlap 380322 TATTTTAAAAAAAAA TTTTCTT TTTT AAAAAAA TATCCTAATCCAAAA bioH 379835 - 380623 + | BioH ssb 381217 - 380672 - | hypothetical protein TERM 688 381601 - 381582 - g 83 -3.6 -6.15536 | overlap 381573 AACTAACAAAAAAAA CATTTTTG TATA CAGAAATG ATAACTATACAAAAA TERM 689 381651 - 381618 - g 71 -3.4 -5.42131 | opp_overlap 381623 TAACTATACAAAAAA TGTTATTTTCTAAA AAATTA TTTAAAAAAAAACA AATCAAAAAAAATAA TERM 690 382234 - 382212 - g 73 -5 -5.07486 | overlap 382222 382224 TATTTTTAAGAAAAA TTGATAAAAA GAT TTTTTTTCAA AAAAAACAAATAAAA TERM 691 382319 - 382296 - g 85 -3.2 -6.43839 | ATATTAAAAAAAAAA TTATTAAAGG TGTT CCTGCAATAA AAATTATAAAACATA dusA 381419 - 382465 + | tRNA-dihydrouridine synthase A dnaB 382752 - 384125 + | hypothetical protein TERM 692 384327 - 384351 + F 73 -8.9 -2.83641 | opp_overlap 384325 384334, overlap 384330 384334 ATTATATTAATAATG TAATAAATATA TAA TATATTTATTA TATAATGATAGATTA TERM 693 384725 - 384735 + G 82 -2.6 -6.30182 | opp_overlap 384725 GAAATAAAAAAAAAA TTTA AAA TAAA TTTTTTTTTATGTGA TERM 694 384735 - 384725 - g 87 -2.6 -6.67286 | opp_overlap 384725 GAAATAAAAAAAAAA TTTA AAA TAAA TTTTTTTTTATGTGA yqgF 384482 - 384874 + | YggF yggW 384938 - 386089 + | YggW TERM 695 386901 - 386923 + G 76 -3.6 -5.75342 | opp_overlap 386898 386921, overlap 386904 ATTAAAAAATAATTG CAATTTTTTT AAA AAAAAAATTA TTTTTTTTAAAAAAA TERM 696 386904 - 386920 + G 73 -5.3 -4.96028 | opp_overlap 386898, overlap 386901 AAAAAATAATTGCAA TTTTTTT AAA AAAAAAA TTATTTTTTTTAAAA TERM 697 386943 - 386921 - g 87 -3.6 -6.34424 | opp_overlap 386901, overlap 386898 386924 TTTTTAAAAAAAAAA TTATTTTTTT TAA AAAAAAAGAA AAAAAAAAAAAAATT TERM 698 387256 - 387245 - g 100 -4.4 -6.60575 | overlap 387247 ATTCAAAAAAAAAAA TAGG AATA CCTA CTCCAATAAAAAAAA mutY 386287 - 387318 + | A/G-specific adenine glycosylase TERM 699 387538 - 387500 - g 78 -9.3 -3.51699 | opp_overlap 387523, overlap 387498 387516 387523 GAAAAAGATAGAATA TTTTTAGAAAAAAAAAT GAAAA ATTTTTTTTTCAAAAAA AAAAAAAATTAAATT TERM 700 387533 - 387516 - g 95 -5.7 -6.22802 | opp_overlap 387523, overlap 387500 387498 387523 TTTTAGAAAAAAAAA TGAAAAA TTTT TTTTTCA AAAAAAAAAAAAATT TERM 701 387543 - 387523 - g 93 -7.1 -5.34208 | opp_overlap 387523, overlap 387516 387500 387498 AAAAAAAATGAAAAA TTTTTTTTT CAA AAAAAAAAA AAATTAAATTAAATT yggX 387302 - 387550 + | hypothetical protein sbcB 388974 - 387547 - | SbcB TERM 702 387897 - 387887 - G 79 -2.6 -6.15259 | GAATTTAAAAAAAAA TTAT TAT ATAA CATTAAATCAATATC TERM 703 387958 - 387992 + g 74 -9 -2.91328 | opp_overlap 387959 387974 387977, overlap 387956 387957 387959 387974 ACACGATATAATCCA ATTTTTTATTAAAAAA TTA TTTTTTAATAAAAAAA AATTTTTTTGACATT TERM 704 387991 - 387959 - G 93 -12.5 -3.27164 | opp_overlap 387959 387956 387958 387957 387974, overlap 387974 387977 CACGATATAATCCAA TTTTTTATTAAAAAA TTA TTTTTTAATAAAAAA AAATTTTTTTGACAT TERM 705 388381 - 388354 - G 73 -8.8 -3.08467 | opp_overlap 388358 388376, overlap 388358 TTTAGAAATCATATA TAAATATAAAAA AAAA TTTTTATATTTA GAAAATAAATATTTT TERM 706 388434 - 388409 - G 73 -4.7 -5.26875 | opp_overlap 388433, overlap 388411 TTTGTAATTAAAAAA GTTGCATATAC ATCA GAATATGCATC ATGAATATGAATATG TERM 707 388683 - 388715 + g 89 -6 -5.40072 | gap 1, opp_overlap 388665 388683, overlap 388713 TATTATATCCAATAA TACAT-ATATTTTTT TGTG AAAAAATATCATGTA TTTTTTTAGAAAGAA TERM 708 389288 - 389271 - R 72 -4.3 -5.37593 | opp_overlap 389252, overlap 389252 389264 TTTTAAATTAAAAAA TATTTTT TATA AAAAATA AAGGCCTTTTAGCTC dut 389854 - 389450 - | hypothetical protein TERM 709 389598 - 389583 - G 74 -3.4 -5.55664 | CCAGGATTAAAAAAA TTTATA AAAT TATAAA AATTTCCTAAAACTA TERM 710 389884 - 389872 - R 77 -3.5 -6.11644 | TTATTTAAAAAAAAA TTTTA AAT TAAAA AATCTATTTTGATAG rplI 390337 - 389888 - | 50S ribosomal protein L9 rpsR 390622 - 390395 - | 30S ribosomal protein S18 TERM 711 390454 - 390435 - G 81 -6.4 -4.76213 | ATAAATCCAAGAAAA CGAGCTAT TTTA ATAGCACG AGATAATTGTCTTTG TERM 712 390481 - 390507 + g 84 -7.5 -4.87318 | gap 1, opp_overlap 390493, overlap 390501 TTTGATATTTTGCTT TAGTTCC-AGTA ATCC TACTAGGAACTA TTTTTCCATTTTCAG TERM 713 390664 - 390696 + r 100 -8.1 -5.63012 | opp_overlap 390651 390648 390657 390666 AATATTAATTTTTAA TATAAAAAAAAATTA AAT TATTTTTTTTTTATA TTTTTATTTATTTTT rpsF 391064 - 390681 - | 30S ribosomal protein S6 TERM 714 390721 - 390731 + g 81 -4 -5.92399 | opp_overlap 390721 ATTTTTATTACAGAA GAAT TTA ATTC TTTTTTATTTTCTTC miaA 392204 - 391266 - | hypothetical protein TERM 715 391553 - 391573 + g 72 -2.7 -5.72616 | opp_overlap 391543 391553 ATCCACTTTTTAACA TAAAAAAAA ATC TTTTTTCTA TTTTTTTATATAAAT TERM 716 392252 - 392293 + r 75 -6.3 -4.84642 | opp_overlap 392254 392288 392289, overlap 392247 392254 392278 392288 ATTAAGTATTTTAAA AATTAATTAATAATTTAAT TAAA ATTTAATTATTAATTAATA TTTTATTAATTTAAA TERM 717 392254 - 392291 + r 85 -8.9 -4.03104 | opp_overlap 392254 392288 392289, overlap 392247 392252 392278 392288 TAAGTATTTTAAAAA TTAATTAATAATTTAAT TAAA ATTTAATTATTAATTAA TATTTTATTAATTTA TERM 718 392291 - 392254 - R 91 -8.9 -4.64598 | opp_overlap 392247 392254 392252 392278 392288, overlap 392288 392289 TAAGTATTTTAAAAA TTAATTAATAATTTAAT TAAA ATTTAATTATTAATTAA TATTTTATTAATTTA pgi 394004 - 392364 - | Pgi TERM 719 392671 - 392648 - G 70 -4 -5.31275 | TTTTATGAGAAAAAA TAAAATTTTC TGAA GAATATTTTA AATTCATATTCATAA TERM 720 393046 - 393028 - G 79 -4.7 -5.52384 | TCTGTATTAAAAAAA TTAGTAT ACCAA ATACTAA TTAAAGCTAATATAA TERM 721 393381 - 393414 + g 74 -7 -4.14345 | opp_overlap 393381 ATCTGTGGAAAAAGA TTTAGAAGCTATTA AAAATA TAGTAGTTTCTAAA TTAATTTTTTTTAAT TERM 722 394088 - 394058 - H 88 -11.6 -2.93747 | opp_overlap 394061 394065, overlap 394061 394065 ACTAAACTTCATATA TAATAAATATAAAA ATT TTTTATATTTATTA AATAAAATAATTAAT TERM 723 394085 - 394061 - H 80 -8.9 -3.60814 | opp_overlap 394061 394065, overlap 394058 394065 AAACTTCATATATAA TAAATATAAAA ATT TTTTATATTTA TTAAATAAAATAATT TERM 724 394061 - 394085 + H 74 -8.9 -3.07291 | opp_overlap 394058 394061 394065, overlap 394065 AAACTTCATATATAA TAAATATAAAA ATT TTTTATATTTA TTAAATAAAATAATT TERM 725 394480 - 394514 + G 72 -8 -3.45093 | overlap 394479 394510 TCCAAAAAATATTTC TCCTATATGTGGAAAT ACT ATTTCCTTAGATAGGA ATTTTCTATTATATC orn 394175 - 394720 + | oligoribonuclease TERM 726 394856 - 394840 - T 75 -9.5 -2.62616 | overlap 394843 TCAGTTGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCGA TERM 727 395063 - 395077 + T 74 -5.8 -5.00616 | opp_overlap 395054 395063 395061, overlap 395054 TCTAAATATAATATA TGTATA TTA TATACA TTTTTTAAAAAAAAA rpmE 395313 - 395104 - | 50S ribosomal protein L31 TERM 728 395288 - 395302 + g 93 -5.8 -5.95166 | GCAAAAATTTTTTTA TATTCA GGA TGAATA TTTTTTTTCATTACA hslV 395540 - 396076 + | ATP-dependent protease peptidase subunit TERM 729 396976 - 396993 + G 71 -8.5 -2.64103 | opp_overlap 396974 396975 396972, overlap 396975 396974 396978 TTTCAACTAAACATG GATCAGT TAAA ACTGATC ATATATTATTTATTG hslU 396090 - 397424 + | ATP-dependent protease ATP-binding subunit TERM 730 397512 - 397455 - f 100 -15.5 -3.10057 | gap 1, opp_overlap 397441 397435 397463 397505, overlap 397441 397433 397463 397505 ATATATATATATATA TATTTAAATGATTACCTATCTTAGACTA ATT TA-TCTATGATAGGTAATCATTTAATTA GAATTAAATATTTTA TERM 731 397504 - 397463 - f 100 -12.7 -3.75937 | gap 1, opp_overlap 397463, overlap 397433 397455 ATATATATATTTAAA TGATTACCTATCTTAGACTA ATT TA-TCTATGATAGGTAATCA TTTAATTAGAATTAA TERM 732 397463 - 397504 + F 100 -12.7 -3.93369 | gap 1, opp_overlap 397433 397463 397455 ATATATATATTTAAA TGATTACCTATCTTAGACTA ATT TA-TCTATGATAGGTAATCA TTTAATTAGAATTAA TERM 733 398239 - 398221 - g 88 -3.9 -6.32976 | opp_overlap 398221 AAAAAAATAAAAAAA GAATACA AAGAG CGTATTC ATTTGTTAATAGTCC fpr 398079 - 398825 + | Fpr TERM 734 398902 - 398850 - T 73 -7.89999 -3.7829 | opp_overlap 398839 398867, overlap 398839 398852 398853 398863 ATTATATTTATTAAA TATTCTTTAGGAATTGATTCCCGTA CAA TACAGGAATCAATTCCAAATACATG CAAAAAAACAAAAAT TERM 735 398900 - 398852 - T 86 -10.5 -3.47361 | opp_overlap 398867, overlap 398850 398853 398863 TATATTTATTAAATA TTCTTTAGGAATTGATTCCCGTA CAA TACAGGAATCAATTCCAAATACA TGCAAAAAAACAAAA TERM 736 398898 - 398853 - T 100 -13.7 -2.67934 | gap 1, opp_overlap 398867, overlap 398852 398850 398863 ATATTTATTAAATAT TCTTTAGGAATTGATTCCCGTA CAA TACAGGAATCAATTCC-AAATA CATGCAAAAAAACAA TERM 737 398889 - 398863 - T 100 -13.2 -3.15427 | opp_overlap 398867, overlap 398853 398852 398850 AATATTCTTTAGGAA TTGATTCCCGTA CAA TACAGGAATCAA TTCCAAATACATGCA TERM 738 398932 - 398917 - T 72 -3.4 -5.86609 | GCAAAAAAACAAAAA TAATTT TTTA AAATTA AATTAAATTTTTATT yba3 399854 - 398943 - | Yba3 TERM 739 399780 - 399794 + g 72 -2.8 -5.75599 | opp_overlap 399781, overlap 399781 TTTATTATGTAAAAC ACTGAT ACT ATCAGC TTTTTTTATAATTTC TERM 740 400045 - 400064 + r 72 -5.2 -5.16151 | opp_overlap 400037, overlap 400043 400044 400060 TAATATATTTTTATT TTTTAAAA AAAA TTTTAAAA TTTTTATTACATTTC dapF 401238 - 400393 - | hypothetical protein TERM 741 401042 - 401062 + g 70 -4.1 -5.20756 | opp_overlap 401045 GAATTAAATATTCTA TAATAAAAC TGA GCTTTATTA TTCTTTTTTTTTTGA TERM 742 401378 - 401358 - g 100 -9.9 -5.47821 | opp_overlap 401360 ATGTATTTAAAAAAA CATTATCTA TTA TAGATAATG AATTAAACAGATTTG TERM 743 401645 - 401628 - g 78 -4.3 -5.9003 | overlap 401620 401632 AAACTAATAAAAAAA TTAATTT TTTA AAATTAA AAAAAATAAATTAAA cyaA 401318 - 401659 + | CyaA TERM 744 402042 - 402026 - T 75 -3.1 -5.99318 | opp_overlap 402026 AAAAAAAAATAAAAA TATTTAC TAT ATAAATA AATTTTATTATCTAT rho 403468 - 402206 - | transcription termination factor Rho TERM 745 402250 - 402262 + g 75 -6.3 -4.67607 | ATTCATTATTTGTTT TTGTC ATG GACAA TTTATTTATTAAAAA TERM 746 402895 - 402915 + g 71 -5.5 -4.64657 | ATGCAATACTTTGAG CTATGTTTT GTA ATAACATAG TTTTTCCAGCTTTAG trxA 404035 - 403700 - | hypothetical protein TERM 747 403981 - 403967 - G 85 -4.4 -5.96521 | opp_overlap 403967 403967 403970, overlap 403957 403969 ATCAACCAAAAAAAA TTTTTT AGA AAAAAA AACTTTTTTTTCAAA TERM 748 404156 - 404185 + r 95 -9.7 -4.72986 | opp_overlap 404156 404168 ACTAATTTCTTAAAA TATTATTTAAAAT ATTT ATTTTAAATAATA TTTTTAATCCAAATA TERM 749 404185 - 404156 - R 90 -9.7 -4.11751 | opp_overlap 404156, overlap 404168 ACTAATTTCTTAAAA TATTATTTAAAAT ATTT ATTTTAAATAATA TTTTTAATCCAAATA rep 406122 - 404176 - | ATP-dependent DNA helicase TERM 750 406216 - 406188 - R 83 -3.4 -6.47325 | opp_overlap 406188 406192 406204, overlap 406192 406204 AAAAAATAAAAAAAA TTTATAATAAAA TTAAT TTTTATTAAAAA TAATATAAATAATTA ilvC 407711 - 406239 - | ketol-acid reductoisomerase ilvD 409612 - 407759 - | hypothetical protein TERM 751 408119 - 408135 + g 79 -8.1 -4.2528 | opp_overlap 408119 CATTGATTTTAAGTA TGTTGTA GGA TACAACA TTTCTTGCATTCCCG iscS 410114 - 411322 + | hypothetical protein iscU 411345 - 411743 + | scaffold protein TERM 752 411791 - 411752 - f 100 -7.5 -6.71862 | gap 1, opp_overlap 411752 411789 AAAATAAAAAAAAAA TTAGTGCC-AGAAAATAT ATCTA ATATTTCCTTAGCACTAA TATAATTAATATATT TERM 753 411994 - 411976 - g 88 -4 -6.31682 | opp_overlap 411966, overlap 411966 AAAATTAAAAAAAAA TTTTTATA TAT TACAAAAA AAATATCATCCTGAT TERM 754 412070 - 412040 - g 91 -2 -6.71862 | AAAATAAAAAAAAAA GATCAATTATTAAT ATC AATAAAAATTAATC AAGGTTATAATATAT TERM 755 412153 - 412141 - g 95 -3.5 -6.82322 | AAATAAAAAAAAAAA TTTTT ATA AAAAA AATAATATTACAAAA TERM 756 412268 - 412258 - g 72 -2.6 -5.85244 | overlap 412246 AATTAAAATAAAAAA TTTT ATA AAAA AAATTAAAAAAAAAA hscB 411908 - 412420 + | HscB TERM 757 413745 - 413729 - g 76 -4.5 -5.51046 | TAAATATACAAAAAA TTGTCAA TTA TTAACAA AATTTAAAATAAAAA TERM 758 413897 - 413881 - g 73 -4.5 -5.1523 | TTCATAACATAAAAA TTGATAC AAC ATATCAA CAAAATAAATCAATT hscA 412428 - 413927 + | HscA fdx 414029 - 414367 + | Fdx TERM 759 414381 - 414365 - T 85 -5.3 -5.82316 | opp_overlap 414365 AGTAGTGAAAAAAAA TAAATAT ATA ATATTTA TGTATATGGATTTTT engA 415728 - 414379 - | EngA TERM 760 414579 - 414597 + g 84 -6 -5.19261 | TTATTTTTCCCGTTA CACCCATT GGT AATGAGTG TTTTTTAGTAGCTTT TERM 761 414676 - 414689 + g 72 -2.5 -5.89947 | overlap 414678 ATTGTAAATAATTTT TATTT GAAG AAATA TTTTTTTTAAATTTG TERM 762 415197 - 415211 + g 82 -4.4 -5.82281 | ATTTGTTTATTTTAT TATTTT CTA AAAATA TTTTTTTCTCTCTTT TERM 763 415538 - 415574 + g 88 -4 -6.4753 | opp_overlap 415524 415547, overlap 415542 TTAAAAAATTTTCTT TTTATATTATTAATAC CAGCA GTATCAATAATATTAA TTTTTTTTTCTTTAA yfgM 416225 - 415734 - | YfgM TERM 764 416007 - 416024 + g 71 -2.1 -5.77571 | overlap 416010 416011 416016 ACTATATATATTATT TTGTTTT TTGA AAAATAA TTTTTCTTTTTTAAT TERM 765 416016 - 416030 + g 81 -5.8 -5.28481 | overlap 416010 416011 416007 ATTATTTTGTTTTTT GAAAAA TAA TTTTTC TTTTTTAATTAAATC SEQUENCE gi|219882535|ref|NC_011878.1| Buchnera aphidicola (Cinara cedri) plasmid pLeu-BCc, complete sequence (length 6054) leuA 1 - 1551 + | 2-isopropylmalate synthase TERM 1 1770 - 1758 - g 70 -4.1 -5.18357 | opp_overlap 1758 TAATCCATTAAAAAA TCCTA TAA CAGGA TGTGTTTTGCATAGA TERM 2 1839 - 1865 + G 100 -14 -3.21064 | opp_overlap 1841, overlap 1837 1834 1853 1854 AGCTGTGGTGCAAGC GATGCTATATTA TTT TAATATAGCATC TATGTTAGTTATGGC TERM 3 1863 - 1841 - g 83 -10.8 -2.52464 | opp_overlap 1839 1837 1834 1853 1854 CTGTGGTGCAAGCGA TGCTATATTA TTT TAATATAGCA TCTATGTTAGTTATG TERM 4 2021 - 2050 + G 81 -8.1 -4.42464 | opp_overlap 2012 2024, overlap 2012 2024 AAAAAATTTGGGACA AAATTTTAGGAAT GTAT ATTCCTAAAATTA TTTATTTGAAACCTT TERM 5 2024 - 2047 + G 86 -9.8 -4.32678 | opp_overlap 2024, overlap 2021 AAATTTGGGACAAAA TTTTAGGAAT GTAT ATTCCTAAAA TTATTTATTTGAAAC TERM 6 2047 - 2024 - g 87 -9.8 -4.39002 | opp_overlap 2024 2021 AAATTTGGGACAAAA TTTTAGGAAT GTAT ATTCCTAAAA TTATTTATTTGAAAC repA1 1600 - 2445 + | replication-associated protein TERM 7 2442 - 2426 - f 75 -9.5 -2.70863 | opp_overlap 2423 2428, overlap 2425 2423 GATTAAAAAAATTAG CACAACT TCC AGTTGTG TGATAATTTTTTTTT TERM 8 2710 - 2730 + F 71 -8.5 -3.16564 | opp_overlap 2710 2708 2717 2726 AAAAAAATAAAGATA TATACTATA ATA TATAGTATA TTAATACAGTAAAAC TERM 9 2730 - 2710 - f 76 -8.5 -3.65523 | opp_overlap 2710, overlap 2708 2717 2726 AAAAAAATAAAGATA TATACTATA ATA TATAGTATA TTAATACAGTAAAAC leuB 2773 - 3876 + | 3-isopropylmalate dehydrogenase TERM 10 4628 - 4616 - g 84 -4.9 -5.75538 | TTTAAAAAATAAAAA TTTTG TTC CAAAA AATCGTTCTTGGAAA TERM 11 5215 - 5197 - g 74 -8.2 -3.67175 | opp_overlap 5197 5200, overlap 5193 5200 AGGGGCCAAAAGGAA GAACTCAT CTT ATGAGTCC TTGGTTAGCTGCTCA leuC 3876 - 5267 + | 3-isopropylmalate dehydratase large subunit leuD 5318 - 5923 + | 3-isopropylmalate dehydratase small subunit