TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.724105 %AT, 534958 nt, 3507 terms. Intergenic: 0.802032 %AT, H2T: 77541 nt, 920 terms; T2T: 16960 nt, 495 terms; H2H: 22717 nt, 727 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|219681945|ref|NC_011834.1| Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum), complete genome (length 641895) gidA 197 - 2083 + | glucose-inhibited division protein A atpB 2278 - 3102 + | ATP synthase subunit A atpE 3139 - 3378 + | ATP synthase subunit C TERM 1 3434 - 3462 + F 75 -8.3 -3.75465 | opp_overlap 3429 3434, overlap 3429 3430 GATTATTACATAAAA TCTTTACGTTTTT TTA GATAACGTAAAGA TTAATTTTCATATTG TERM 2 3462 - 3434 - f 78 -7.6 -4.58424 | opp_overlap 3429 3434 3430, overlap 3429 GATTATTACATAAAA TCTTTACGTTTT TTTAG ATAACGTAAAGA TTAATTTTCATATTG atpF 3497 - 3982 + | ATP synthase B chain atpH 3982 - 4515 + | ATP synthase delta chain TERM 3 4826 - 4810 - g 72 -6.6 -4.2349 | GGTGTACAGGGAAAA TACTGG AAGTG CCAGTA GGTGATAATTTTTTA TERM 4 4888 - 4903 + G 71 -2.6 -5.44119 | gap 1 TTGATGGAAAGGATT CCATACA AAA TG-ATGG TTTTTTTCCAGTAGA TERM 5 4957 - 4939 - g 70 -8.2 -3.14211 | ATGCTCCTGGAGTAA TTGACCGA AAA TCAGTCAA CCAGCCTATACAAAC TERM 6 5224 - 5202 - g 70 -8.4 -2.72879 | opp_overlap 5201, overlap 5199 AATACAATCATAGTA GTAGCTTCTG CTT CAGAAGCCGC ATCCTTACAATATTT atpA 4530 - 6068 + | ATP synthase subunit A TERM 7 6087 - 6074 - f 72 -3.9 -5.47399 | TCAATTTTAAAAAAA TAACT AATA AGTTA AAAAGAGAAAATAGT TERM 8 6170 - 6159 - g 74 -2.2 -5.63374 | CCAATACTAAAAAAA TCAC TAAA GCGA TGGAAATGGTGGCAG atpG 6101 - 6973 + | ATP synthase gamma chain TERM 9 7807 - 7823 + G 84 -9.5 -3.53091 | opp_overlap 7820, overlap 7783 CGGATGCCGTCAGCA GTAGGTT ATC AACCTAC TTTAGCAGAAGAAAT atpD 6997 - 8394 + | ATP synthase subunit B atpC 8421 - 8837 + | ATP synthase epsilon chain TERM 10 8902 - 8886 - T 82 -6.7 -5.2189 | opp_overlap 8879, overlap 8899 GCAAGTACTAAAAAA TTTATTC TAA GAATAAA AAATATTTTTAAACG gyrB 11322 - 8911 - | DNA gyrase subunit B TERM 11 9007 - 9019 + g 70 -7.7 -3.50722 | opp_overlap 9006 ATTAAATAAATTATT TGCAG AAA CTGCA TCTTTGATAGTTACC TERM 12 10760 - 10786 + g 72 -6.8 -4.07535 | opp_overlap 10767, overlap 10762 10767 TCACGCAAACGTTTA GATAAAATTTCA TAT TGAAATTTTATA TTATTTGTAAAAGTT TERM 13 10762 - 10784 + g 84 -9.4 -3.62695 | opp_overlap 10767, overlap 10760 10767 ACGCAAACGTTTAGA TAAAATTTCA TAT TGAAATTTTA TATTATTTGTAAAAG TERM 14 10767 - 10779 + g 72 -4.9 -4.86029 | opp_overlap 10767, overlap 10762 10760 AACGTTTAGATAAAA TTTCA TAT TGAAA TTTTATATTATTTGT dnaN 12549 - 11449 - | DNA polymerase III beta chain dnaA 13918 - 12554 - | chromosomal replication initiator protein DnaA TERM 15 12825 - 12840 + g 79 -4.8 -5.55769 | ACTGTTTTCTGGATA TTATCA ATAG TGATAA TTTTTTCTTGTACAG TERM 16 13714 - 13734 + g 84 -4 -5.82316 | opp_overlap 13713 TTAATGGAGAATTAG TACCGCAA TAATC TTGCAGTA TTTTTTTTAAATGAT TERM 17 13998 - 14033 + H 76 -5.1 -5.47159 | opp_overlap 14000, overlap 13996 14000 GTTTACTTTGATATA TATAATTTTATATAA TTTTTT TTATATGAAATTATG TTTTTTATATTAAAA rpmH 14369 - 14512 + | 50S ribosomal protein L34 TERM 18 15172 - 15156 - g 82 -2.4 -6.11644 | opp_overlap 15167, overlap 15167 TGATGTAAAAAAAAA TAAAAA GAAAA TTTTTA TCAAAAATGATGTGA TERM 19 15179 - 15167 - g 75 -3.5 -5.51078 | opp_overlap 15167, overlap 15156 AAAATAAAAAGAAAA TTTTT ATC AAAAA TGATGTGATTAGTTT yidC 15010 - 16608 + | 60 kDa inner-membrane protein TERM 20 16904 - 16918 + G 71 -7.2 -3.78775 | ACAAGGCCATGGTAG TCCATT AAT AATGGA TTTACTAATAAGAAG TERM 21 17310 - 17339 + G 93 -10.8 -3.77264 | AAAAAAATCGTAATT GCTGGACTTCCT AATTCC GGGAAGTCTAGC TTATTAAATATTTTA TERM 22 17516 - 17544 + G 80 -6.1 -4.99861 | opp_overlap 17521, overlap 17521 TATCATGCGTGCTTG GGAAATGATTAGA AAA TCTGATCATGTTC TTTTTGTAATTGATA TERM 23 17806 - 17849 + G 70 -4.7 -4.65895 | gap 1 AAAGTGTTTTCATTG CTCGTCGT-CGTCATATCAA ACAAC TTGATTTAGCGTACGATGAG TTTTTAACTGCCGAA thdF 16647 - 18008 + | tRNA modification GTPase TERM 24 18058 - 18074 + F 70 -8.7 -2.62616 | opp_overlap 18048, overlap 18049 TTGAACCACCGACAC GGGGATT TTC AGTCCCC TGCTCTACCAACTGA TERM 25 18143 - 18157 + F 75 -4.4 -5.59879 | overlap 18150 18152 AAATGTTGTCAATGT TTTTTA TTG TAAAAA TTTTTTATATTTATA TERM 26 18260 - 18244 - f 73 -2.4 -5.95539 | TCTTAAATAAAAAAA TAAAAA AATAA TTTTTA CCCTTGAAAGTTTTA groES 18375 - 18665 + | co-chaperonin GroES mopA 18714 - 20360 + | 60 kDa chaperonin TERM 27 20438 - 20407 - f 73 -7.4 -3.95535 | opp_overlap 20409, overlap 20405 20408 ACAATTTTAAAAATA CCTTTCCTCAGAAT CACT ATTCTGAGGAAATT TTTTATGTTCTTTGA TERM 28 20437 - 20408 - f 81 -10.9 -2.96237 | opp_overlap 20409, overlap 20407 20405 CAATTTTAAAAATAC CTTTCCTCAGAAT CACT ATTCTGAGGAAAT TTTTTATGTTCTTTG TERM 29 20409 - 20436 + F 100 -14.4 -5.57729 | opp_overlap 20408 20407 20405 AATTTTAAAAATACC TTTCCTCAGAAT CACT ATTCTGAGGAAA TTTTTTATGTTCTTT efp 20985 - 21596 + | elongation factor P dnaC 22354 - 21614 - | DNA replication protein DnaC dnaT 22848 - 22354 - | primosomal protein I rsmD 23520 - 22945 - | 16S rRNA m2G966 methyltransferase (YhhF) TERM 30 23022 - 23034 + g 87 -2.7 -6.22691 | TCCAATTTTTTGGTA CAATT ATG GATTG TTTTTTTTCTTGTTC TERM 31 23766 - 23749 - g 86 -7.1 -5.09685 | TAATACAGATAAAAA TCATGAT ATTA ATCATGA AGACTTATATACCAA ftsY 23651 - 24787 + | cell division protein FtsY TERM 32 24854 - 24872 + F 80 -7.6 -4.87291 | TTTAATTATTTTTTG TATAAATC TTT GATTTATA TTTTTAATTAAAGTA TERM 33 24979 - 24963 - g 71 -8.1 -3.17416 | overlap 24962 AAATGATTAATAAAG TACAGAT TTT ATCTGTA ACACCACCAGGTAAT rpoH 24950 - 25804 + | RNA polymerase sigma factor TERM 34 25848 - 25835 - T 77 -2.5 -6.10295 | opp_overlap 25817, overlap 25817 25815 25836 TTAATACAAAAAAAA TTTTT TATT AAAAA TTATTTATATAGAGT glmS 27774 - 25945 - | D-fructose-6-phosphate amidotransferase TERM 35 26183 - 26197 + g 75 -7.2 -4.07885 | ATATTTTTTTTATTT TTCTCT AAT AGAGAA TTTTCAGGAGCAATC TERM 36 27459 - 27445 - G 72 -5.7 -4.56597 | opp_overlap 27444 27445 27456 TTGTTTTTTTAAAAA TCCAC GCAGT GTGGA ATTGTTTTCAATAAT TERM 37 27456 - 27478 + g 75 -8.6 -3.48593 | opp_overlap 27445, overlap 27445 27444 AAAATCCACGCAGTG TGGAATTGTT TTC AATAATTCCA TTATGTACAACAATA TERM 38 27573 - 27584 + g 100 -3 -6.67286 | TATGAGCAACTCCAA TACT ACCA AGTA TTTTTTTTTTATTTG glmU 29223 - 27844 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 39 29778 - 29754 - g 70 -5.1 -4.64159 | opp_overlap 29754 ATAAATAATAATAAA GTAGAAAATAA TTT TTGTTCTCTAC TTTCATCATTGCAAT yigL 29403 - 30221 + | sugar phosphatase TERM 40 30233 - 30248 + F 75 -2.6 -6.0458 | opp_overlap 30234, overlap 30234 30242 ATAAAGTTATAAAAA TTTCTT ATAC AAGAAG TTTTTTTTGATTTCT metE 31206 - 33482 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 41 33570 - 33519 - T 79 -10 -3.30218 | gap 1, opp_overlap 33518 33516 33519 33521 33526, overlap 33511 33526 TATAATATAATTTAA TATTAAATCATC-TTTTAGAATATT TTA AAAAATCTAAAATGATGATTTAATA CTTATAAATTTTTAT TERM 42 33519 - 33570 + T 78 -10 -2.73575 | gap 1, opp_overlap 33511 33519 33526, overlap 33518 33516 33521 33526 TATAATATAATTTAA TATTAAATCATC-TTTTAGAATATT TTA AAAAATCTAAAATGATGATTTAATA CTTATAAATTTTTAT purH 35182 - 33605 - | IMP cyclohydrolase TERM 43 34385 - 34403 + g 70 -6.8 -3.9093 | TACACACTCTAATGC TATGTCAG AAT CTGATATA TTATTATATGATAAA TERM 44 35288 - 35302 + r 80 -8.5 -3.98745 | opp_overlap 35288 35280 ATACTAATTTAGTAA GGGGC ACTAC GCCCC TTCTTTAAATACTTC TERM 45 35302 - 35288 - R 76 -9.2 -3.23152 | opp_overlap 35288, overlap 35280 ATACTAATTTAGTAA GGGGCA CTA CGCCCC TTCTTTAAATACTTC hupA 35601 - 35323 - | DNA-binding protein hu-alpha TERM 46 35751 - 35734 - R 74 -5.7 -4.9792 | opp_overlap 35733 35728 35734 TATTTGATATAAAAA GAAAAAA TATA TTTTTTC ATATTATAAATTCTA TERM 47 35864 - 35842 - R 74 -5.8 -4.73635 | TACAATTGAATAAAA TTTAAATATA TAA TATATCTAAA AATCATCAAAAAAAT TERM 48 35915 - 35938 + r 70 -8.4 -2.62267 | opp_overlap 35914 35915, overlap 35914 35912 TTATTTTTAATAAAT TGTTATTTTT TTTA AAAAATAACA GTATTGATTTCTACA TERM 49 35938 - 35915 - R 72 -8.4 -3.09784 | opp_overlap 35915 35914 35912, overlap 35914 TTATTTTTAATAAAT TGTTATTTTT TTTA AAAAATAACA GTATTGATTTCTACA TERM 50 36032 - 36054 + r 75 -2.9 -5.93252 | overlap 36034 ATGAATTTGAAGCGT TTTTATATA AAATA TATATAAGA TTTTTTATTTTTAAA TERM 51 36280 - 36307 + r 70 -7 -4.12532 | overlap 36283 ATTATCATGTTTTTA CTGTGGCTGCTT TTAA GAGCAGCCATAA TTTATATATACAAAA TERM 52 36283 - 36304 + r 81 -10.9 -3.09116 | overlap 36280 ATCATGTTTTTACTG TGGCTGCTT TTAA GAGCAGCCA TAATTTATATATACA rpoC 40558 - 36335 - | DNA-directed RNA polymerase beta' subunit rpoB 44664 - 40636 - | DNA-directed RNA polymerase beta chain TERM 53 41423 - 41445 + g 74 -6.4 -4.48902 | opp_overlap 41423 GGCATATCTTCAACA GGATTAATTT TAG AAATTACTCC TTTATTTCCATGTCT TERM 54 44687 - 44709 + r 71 -5 -4.96848 | CTAAGCTCGTTGACA GATAAGTTGA AAA TTAATTTATC TTTTTGTCTGAAGGG TERM 55 44759 - 44769 + r 78 -4 -5.85178 | CGTAAGAATTTTAAT TACA TTT TGTA TTTTTTTTAAATGTT TERM 56 44849 - 44819 - R 81 -10.4 -3.15544 | opp_overlap 44819 44821 44822, overlap 44821 TTTTATTTTGATCAA CAGGGCTGGTGAAG CAA CATCACCAGCCGTA TTTGAAAATTAATTA TERM 57 44819 - 44849 + r 74 -8.2 -3.62478 | opp_overlap 44819 44821, overlap 44821 44822 TTTTATTTTGATCAA CAGGGCTGGTGAAG CAA CATCACCAGCCGTA TTTGAAAATTAATTA TERM 58 44847 - 44821 - R 81 -10.8 -3.14051 | opp_overlap 44821 44819 44822, overlap 44819 TTATTTTGATCAACA GGGCTGGTGAAG CAA CATCACCAGCCG TATTTGAAAATTAAT TERM 59 44821 - 44847 + r 83 -10.8 -3.38581 | opp_overlap 44819 44821, overlap 44819 44822 TTATTTTGATCAACA GGGCTGGTGAAG CAA CATCACCAGCCG TATTTGAAAATTAAT TERM 60 44822 - 44846 + r 95 -14.3 -2.62667 | opp_overlap 44821 44819, overlap 44821 44819 TATTTTGATCAACAG GGCTGGTGAAG CAA CATCACCAGCC GTATTTGAAAATTAA rplL 45253 - 44885 - | 50S ribosomal protein L7/L12 rplJ 45817 - 45320 - | 50S ribosomal protein L10 rplA 46778 - 46083 - | 50S ribosomal protein L1 rplK 47209 - 46781 - | 50S ribosomal protein L11 nusG 47802 - 47257 - | transcription antitermination protein NusG secE 48188 - 47805 - | preprotein translocase SecE subunit TERM 61 48238 - 48225 - R 75 -3.9 -5.48787 | ATAATATAGAAAAAA TATGT TAAT ACATA AAAAATTTTATTCTT TERM 62 48347 - 48330 - R 72 -5.7 -4.74518 | opp_overlap 48330 48329 48326, overlap 48320 AACTATTAAAATAAA CTATTTT TTTT AAAATAG ATTAATTTTTTTATG TERM 63 48531 - 48547 + r 80 -10.9 -2.65264 | overlap 48533 TTGAACTGGGGACCT CACCCTT ACC AAGGGTG TGCTCTACCTACTGA murB 50064 - 48994 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 64 50261 - 50283 + G 73 -4.3 -5.00616 | opp_overlap 50281, overlap 50265 ATACAGTGTTCTTTT GAATTTTTT CCGCC GAAAAATTC TTTTTTAGAAGAAAA metF 50180 - 51058 + | 5,10-methylenetetrahydrofolate reductase argE 52215 - 51070 - | acetylornithine deacetylase TERM 65 52824 - 52811 - g 74 -2.4 -5.59502 | GAAAAAATTAAAAAA GCAA ATCTGA TTGC ATTACCTGGGTGTTA argC 52376 - 53380 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 53401 - 54174 + | acetylglutamate kinase TERM 66 55341 - 55357 + G 72 -5.1 -4.82518 | opp_overlap 55344, overlap 55344 GATAAAGTGTATAAG CAATCTG ATG CAGATGG TTTTATTCGTCTTTT argG 54204 - 55415 + | argininosuccinate synthase TERM 67 56355 - 56341 - g 81 -2.1 -5.93809 | GCCTCAGAAAAAAAA TCCAG ATGCA CTAGA ACTTATTCGAGCCAA argH 55487 - 56866 + | argininosuccinate lyase yibN 56948 - 57382 + | predicted rhodanese-related sulfurtransferase (YibN) secB 57490 - 57918 + | protein-export protein SecB cysE 58020 - 58844 + | serine acetyltransferase rpoD 60789 - 58951 - | RNA polymerase sigma factor TERM 68 59866 - 59890 + g 93 -4.5 -6.10489 | opp_overlap 59880 AAGATAGTTAATTTT TTTTATTGGAA AAA TTTTAATAAAA TTTTTTTTTGGCATT dnaG 62690 - 60957 - | DNA primase TERM 69 62260 - 62242 - G 100 -6.1 -6.23209 | CCAATTAAAAAAAAA TCAATCA TATTT TGATTGA TACCTCTTCTAGCTA TERM 70 62717 - 62738 + r 95 -7.3 -6.11392 | overlap 62718 ATTATAGAATTCGTT TCCGTTCTT GAAC AAGAACGGC TTTTTTTATTTATTT TERM 71 62718 - 62737 + r 87 -10.8 -4.21345 | overlap 62717 TTATAGAATTCGTTT CCGTTCTT GAAC AAGAACGG CTTTTTTTATTTATT rpsU 62986 - 62771 - | 30S ribosomal protein S21 TERM 72 63069 - 63086 + H 78 -3.5 -5.9362 | CTATATCAATTAGTG TGATATT GTAA AGTATCA TTTTTTTATGTTTTA TERM 73 63135 - 63158 + H 72 -8.4 -3.02966 | opp_overlap 63130, overlap 63131 63133 63134 ATTTAGATTAGTTCA TTTAAAATGA ATGT TCATTTTAAA ATTTATATCAAATAT TERM 74 63162 - 63174 + H 75 -3.5 -5.68489 | GTTCATTTTAAAATT TATAT CAA ATATA TTTTTTCTTATTGTA ygjD 63220 - 64230 + | O-sialoglycoprotein endopeptidase ribB 64855 - 64208 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 75 64390 - 64362 - G 71 -7.5 -3.53012 | opp_overlap 64362 64363, overlap 64345 64363 CCGGCCGGTTTGAAA CCTGCTAGAGAAA CAA TTTCTATAGCAGC TTCTGTGTGTCCTGG TERM 76 64362 - 64390 + g 71 -7.5 -3.65656 | opp_overlap 64345 64362 64363, overlap 64363 CCGGCCGGTTTGAAA CCTGCTAGAGAAA CAA TTTCTATAGCAGC TTCTGTGTGTCCTGG TERM 77 64389 - 64363 - G 84 -11 -2.71712 | opp_overlap 64362 64363, overlap 64345 64362 CGGCCGGTTTGAAAC CTGCTAGAGAAA CAA TTTCTATAGCAG CTTCTGTGTGTCCTG TERM 78 64363 - 64389 + g 86 -11 -2.78912 | opp_overlap 64345 64363 64362, overlap 64362 CGGCCGGTTTGAAAC CTGCTAGAGAAA CAA TTTCTATAGCAG CTTCTGTGTGTCCTG yb3052 66073 - 65126 - | kinase TERM 79 66242 - 66259 + H 78 -5.7 -5.32396 | TAAAAAATTCTATTT TTCTATT ATAG AATAGAA TTTTGTTTTTAGTAT TERM 80 66884 - 66897 + G 100 -5.3 -6.11644 | opp_overlap 66884, overlap 66881 CAAGTTTTGTATGAA TGCAA TGCA TTGCA TTTTTTTTTCCCTGA TERM 81 67178 - 67194 + G 90 -3.7 -5.99318 | opp_overlap 67178 67181, overlap 67179 TATATTCGAGACATA GCAGTAT TAA ATACTGG TTTTTATTTTTTTTT TERM 82 67179 - 67193 + G 75 -7.2 -4.11355 | opp_overlap 67178 67181, overlap 67178 ATATTCGAGACATAG CAGTAT TAA ATACTG GTTTTTATTTTTTTT cca 66287 - 67531 + | tRNA nucleotidyltransferase bacA 68354 - 67557 - | bacitracin resistance protein TERM 83 67714 - 67698 - G 70 -2.3 -5.5074 | opp_overlap 67698, overlap 67686 GAATCCAATAAAAAA TATTGGA AGA TCTAATA TTTTAAAATTATGCA TERM 84 68118 - 68135 + g 72 -5.7 -4.49937 | opp_overlap 68125, overlap 68119 68129 TTTTGTATTTGTTTT TTTAACA TTTA TGTTAAA TTTTAATATTCTTAA TERM 85 68136 - 68152 + g 74 -2.4 -5.60993 | opp_overlap 68136 68144, overlap 68119 68129 AACATTTATGTTAAA TTTTAA TATTC TTAAAA TTTTTTTATGAAAAA TERM 86 68424 - 68404 - R 78 -7.6 -4.66057 | opp_overlap 68404, overlap 68399 ATATATAAATTAAAA CGGTACTA AATAA TAGCACCG TTTTTGTATTAAAAA TERM 87 68404 - 68424 + r 74 -5.4 -5.0916 | opp_overlap 68399 68404 ATATATAAATTAAAA CGGTACTA AATAA TAGCACCG TTTTTGTATTAAAAA crr 68925 - 68440 - | glucose-specific PTS system enzyme IIA component TERM 88 68915 - 68883 - G 81 -7.4 -4.6526 | gap 1 ATAAAGGTGCAAAAA TTTCTG-TTTTTTTA CTGT TAAAAAAATCAGAAA AGAAACTCATTTTTT ptsI 70690 - 68975 - | phosphoenolpyruvate-protein phosphotransferase ptsH 71096 - 70839 - | phosphocarrier protein HPr TERM 89 71227 - 71239 + r 82 -4.9 -5.71983 | opp_overlap 71227 TATCTTAAATAAATT CTATT TTT AATAG TTTTTTTATAGTTCA cysK 72192 - 71245 - | cysteine synthase A TERM 90 71984 - 72000 + g 78 -7.3 -4.52505 | ATTCCTGTATTACCA CTAGTCG CCT CGATTAG TTTTACATTTTTATT TERM 91 73118 - 73129 + G 82 -4.4 -5.60993 | overlap 73114 ATTAATATTTTCATG TCAC GGAT GTGA TTTTTTTGTAAAAAC lig 72447 - 74477 + | DNA ligase (NAD+) TERM 92 75510 - 75498 - g 70 -4.9 -4.76213 | AGAAAGGTAATAAAA TTTCT AAA AGAAA AAATGCTATAAATAT gltX 74786 - 76189 + | glutamyl-tRNA synthetase fliE 76825 - 76529 - | flagellar hook-basal body complex protein FliE TERM 93 78609 - 78597 - g 83 -4.9 -5.74122 | overlap 78589 TATTATAGAAAAAAA TACTT TTC AAGTA GATCTTCAAAATAAT fliF 77089 - 78726 + | flagellar M-ring protein fliG 78723 - 79718 + | flagellar motor switch protein FliG fliH 79711 - 80373 + | flagellar assembly protein FliH TERM 94 80583 - 80602 + GF 79 -3.6 -5.66338 | overlap 80585 AATGCTGAAGTGATA GGTTTTTC GGGA GAAAAAAC TTTTTTATTATCTTT TERM 95 80702 - 80675 - gf 79 -9.4 -3.25312 | opp_overlap 80667 80675, overlap 80667 80677 80681 AAAAATAGCTAGCAA TAGCAATTTTTT TATA AAAAAATTGCCA TTAGGTATGGAATTA TERM 96 80700 - 80677 - gf 83 -9.8 -3.17608 | opp_overlap 80667 80675, overlap 80667 80675 80681 AAATAGCTAGCAATA GCAATTTTTT TATA AAAAAATTGC CATTAGGTATGGAAT TERM 97 81130 - 81114 - gf 91 -7.3 -5.3104 | opp_overlap 81114 TTATTAAAAATAAAA GCAGCAT CTT ATGCTAC TAATATTGCAGAATA TERM 98 81180 - 81158 - gf 71 -4.3 -4.84761 | opp_overlap 81158, overlap 81144 ATATTTTTATAAAAA TAATAAACA TGTAT TGCTTATTA TGGATTCATTGACTC fliI 80331 - 81734 + | flagellum-specific ATP synthase fliJ 81764 - 82201 + | flagellar FliJ protein TERM 99 82323 - 82309 - f 74 -7.2 -4.29738 | opp_overlap 82309 82297 TCATATTTATTAAAA TCTACT TTT AGTAGA TTCAATCAATATTTT TERM 100 83249 - 83229 - g 71 -4.2 -5.13521 | opp_overlap 83240, overlap 83240 83242 AAACCAGTTAAAAAA TTATAAAA ACTTA TTTTATAA AAATATTTATTACAC fliK 82639 - 83346 + | flagellar hook-length control protein TERM 101 84085 - 84075 - g 74 -2.6 -5.72616 | overlap 84084 ATGTATAGAAAAAAA TATT GAG AATA AAGTATCTTTAAATG fliM 83407 - 84354 + | flagellar motor switch protein FliM fliN 84347 - 84748 + | flagellar motor switch protein FliN fliP 84760 - 85899 + | flagellar biosynthetic protein FliP TERM 102 85900 - 85914 + F 78 -4.4 -5.80003 | opp_overlap 85900 AGTTTTAATACATAA TATTTT TAT AAAATA TTTTTTGTTTATTAC fliQ 85971 - 86240 + | flagellar biosynthetic protein FliQ TERM 103 86299 - 86313 + G 90 -3.6 -6.10295 | TTTTTTTTGGCCTAT GATAAG AGT TTTATC TTTTTTTTCTGTTGC fliR 86240 - 87016 + | flagellar biosynthetic protein FliR TERM 104 87105 - 87139 + T 95 -10.4 -4.8048 | opp_overlap 87087 87106 87110, overlap 87106 AAAAAATTTCTACAA ATAAAGTATAATTTTT TTA AAAAATTATACTTTAA TTTTTAGTGTAAAAA TERM 105 87138 - 87106 - T 100 -13.9 -3.92745 | opp_overlap 87106 87105, overlap 87087 87110 AAAAATTTCTACAAA TAAAGTATAATTTTT TTA AAAAATTATACTTTA ATTTTTAGTGTAAAA TERM 106 87106 - 87138 + T 100 -13.9 -3.47806 | opp_overlap 87087 87106 87110, overlap 87105 AAAAATTTCTACAAA TAAAGTATAATTTTT TTA AAAAATTATACTTTA ATTTTTAGTGTAAAA TERM 107 87134 - 87110 - T 91 -10.3 -4.55697 | opp_overlap 87106 87105, overlap 87087 87106 ATTTCTACAAATAAA GTATAATTTTT TTA AAAAATTATAC TTTAATTTTTAGTGT TERM 108 87149 - 87171 + T 80 -8 -4.37737 | overlap 87143 CTTTAATTTTTAGTG TAAAAAAATA GAT TATTTTTTTA TTTAATTTTTCCTTC rpmG 87336 - 87169 - | 50S ribosomal protein L33 rpmB 87574 - 87347 - | 50S ribosomal protein L28 TERM 109 87860 - 87878 + H 78 -6.2 -5.24799 | opp_overlap 87864 87868, overlap 87849 87868 GATGTTAACTATTAG TTAATTTA TTA TAAATTAA TTTTTATATTTATAA TERM 110 88033 - 88043 + G 75 -5.4 -4.87786 | ATATATTTTTAATTT TACG AAT CGTA TTTTTATAGGATTGA TERM 111 88502 - 88492 - g 91 -2.6 -6.34424 | TTTTGAAAAAAAAAA TATT TTA AATA AATCAACTATTATTA TERM 112 88538 - 88522 - g 73 -5.3 -4.7871 | overlap 88512 AACTATTATTAAAAA TTTTAAT AAA ATTAAAA AAATATATAGTTTTT TERM 113 89208 - 89198 - g 87 -2.6 -6.25578 | ATCAAACAAAAAAAA TTTT ATA AAAA AGTAATTCATCCAGA TERM 114 90285 - 90275 - g 87 -2.6 -6.17033 | AAAAAAAATAAAAAA TTAT CGA ATAA TAAAAATATTTTTGG TERM 115 90519 - 90535 + G 76 -3.8 -5.43514 | opp_overlap 90519 GAAGTAACAACATAT TAAAGT ATATA ACTTTA TTTTTTCCTTATTTT ytfN 87920 - 90832 + | hypothetical protein ppa 91396 - 90848 - | inorganic pyrophosphatase TERM 116 91013 - 91031 + g 80 -7.6 -4.62163 | CTTTTTTAACAATTC TGATATAT CTG ATATATCA TTTATGTTTTTATAT TERM 117 91862 - 91850 - g 72 -4.9 -4.93316 | TAAGAACATTAAAAA TATGT TAG ACATA GCTATTAATATTTCA pmbA 91590 - 92930 + | PmbA protein TERM 118 92985 - 92960 - f 80 -10.7 -2.76509 | opp_overlap 92964, overlap 92959 92964 TTTTAAATAATGAAC TAAAGGTAATA AATT TATTACCTTTA TAAAAATATTTCTAG TERM 119 92981 - 92964 - f 73 -7.1 -4.05045 | opp_overlap 92964, overlap 92960 92959 AAATAATGAACTAAA GGTAATA AATT TATTACC TTTATAAAAATATTT TERM 120 92964 - 92981 + F 71 -7.1 -3.89903 | opp_overlap 92964 92960 92959 AAATAATGAACTAAA GGTAATA AATT TATTACC TTTATAAAAATATTT TERM 121 94325 - 94337 + F 78 -3.5 -5.89921 | opp_overlap 94325 CATTTTATTTAAATA TAAAA TTT TTTTA TTTTTTTATTCTAAT TERM 122 94468 - 94455 - g 74 -2.4 -5.64873 | opp_overlap 94455 GGTAATAATAAAAAA GAAG TACTAG CTTC TTTATATAAAGGTGT fabB 94395 - 95615 + | 3-oxoacyl-[acyl-carrier-protein] synthase I TERM 123 95628 - 95610 - f 75 -4 -5.63374 | overlap 95623 CTAATAGTAAAAAAA TATTAATA TAC TATCAATA ATTGAAATATTTTTT TERM 124 95707 - 95737 + F 95 -7.9 -5.66229 | opp_overlap 95707 TATTTTTTAAAAAAA TCATTTTAATATT TTTTT GATATTAAAATGA TTTTTTATTCTTAAT TERM 125 95737 - 95707 - f 87 -7.2 -5.41143 | opp_overlap 95707 TATTTTTTAAAAAAA TCATTTTAATAT TTTTTTG ATATTAAAATGA TTTTTTATTCTTAAT talA 95856 - 96806 + | transaldolase TERM 126 97182 - 97168 - g 86 -10 -3.59738 | opp_overlap 97170, overlap 97160 CAGGACATCCTGAAA CAGGTG AAA CACCTG GTGTAGAAACAACTA TERM 127 97252 - 97264 + G 70 -6.3 -4.25256 | opp_overlap 97252 TGGCTATTGCAGAAA GAACT TTA AGTTC TTATTTTAATCGACC tktB 96861 - 98858 + | transketolase TERM 128 98884 - 98904 + F 75 -8.3 -3.79687 | opp_overlap 98881, overlap 98882 AATTTTAAATATTTA TGGGGCT CAATTAT AGCCCCA TCTTTTATGAAAAAT dapE 98963 - 100090 + | succinyl-diaminopimelate desuccinylase TERM 129 100109 - 100129 + T 84 -7.1 -5.28778 | opp_overlap 100108 TTCAACAAAAATATT TATAAAAAA ACA TTTTTTATA TTTTTTATAAATGAT TERM 130 100173 - 100141 - T 83 -10 -3.87373 | opp_overlap 100141 100140 TATATTTTTTATAAA TGATGCAGAATATC ATAGA GATAGTCTGCACCA ATTATTACGCATGAA dapA 101364 - 100480 - | dihydrodipicolinate synthase TERM 131 100639 - 100662 + g 72 -6 -4.58085 | GGGTTCTATGAACAG CGCTTCATGT AGTA ACATTAGGCG TTTATTTATAGATCT TERM 132 100839 - 100826 - G 76 -3.9 -5.5112 | opp_overlap 100823 100819 100826, overlap 100819 CTGATTAATAAAAAA TTAGT TTTA ACTAA TTCTTTTATTTTATG aroC 103004 - 101940 - | chorismate synthase yb2331 103299 - 103859 + | hypothetical protein hisG 104184 - 105083 + | ATP phosphoribosyltransferase hisD 105092 - 106399 + | histidinol-dehydrogenase hisC 106396 - 107502 + | histidinol-phosphate aminotransferase hisB 107492 - 108553 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 108553 - 109143 + | amidotransferase hisH hisA 109148 - 109888 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisF 109867 - 110643 + | imidazole glycerol phosphate synthase subunit HisF TERM 133 110667 - 110649 - g 78 -4.6 -5.42862 | opp_overlap 110652, overlap 110652 AGAGTGTTAAAAAAA CATGATTT ATT AAATCTTG ATTGGACAAAAACTA TERM 134 111268 - 111251 - g 78 -2.7 -5.86465 | AAGAAGAGAAAAAAA TCTGAAT ACTA ATTCTGA AAAATTATTGAAATA hisI 110637 - 111284 + | phosphoribosyl-AMP cyclohydrolase gnd 111643 - 113049 + | 6-phosphogluconate dehydrogenase dcd 113212 - 113832 + | deoxycytidine triphosphate deaminase TERM 135 113846 - 113858 + F 76 -4.9 -5.46129 | opp_overlap 113846 AAAGTTTTTACGTAA TATAC TAT GTATA TTTTTTAATTTCTTA metG 113980 - 115623 + | methionyl-tRNA synthetase mesJ 116993 - 115671 - | cell cycle protein MesJ ribE 117219 - 117845 + | riboflavin synthase subunit alpha rnfA 117882 - 118463 + | hypothetical protein rnfB 118466 - 118969 + | ferredoxin II TERM 136 118986 - 118974 - f 72 -3.5 -5.66229 | overlap 118984 ATGAAGAATAAAAAA TTATT AGA AATAA AAAAAATTTTTAAAA TERM 137 119003 - 118993 - f 81 -2.6 -6.28967 | opp_overlap 118993, overlap 118984 TAGAAATAAAAAAAA TTTT TAA AAAA TTCTTTTCTATAAAA rnfC 119132 - 120553 + | membrane protein TERM 138 120714 - 120724 + G 95 -4 -6.32216 | TTTTGGTATTGGTAC TTTG ATA CAAA TTTTTTTTTCTATAT ydgO 120601 - 121644 + | integral membrane protein of SoxR-reducing complex (YdgO) TERM 139 122233 - 122202 - gf 74 -6.8 -4.29432 | gap 1, opp_overlap 122201 122202 CAAATTCTATCAAAA GAACGGT-TGTTTTT ATT AAAAAGATACCGTTC ATATTTGATTTTTTA rnfG 121793 - 122287 + | nitrogen fixation protein TERM 140 122850 - 122869 + G 76 -6.6 -4.52803 | TTTCTTATATTAGGC TTCTTAAT TGCC ATTAAGAA TTTTATAGATTTATA TERM 141 122934 - 122909 - g 71 -2.8 -5.38321 | gap 1, opp_overlap 122913 AAATACTATAAAAAA TATT-GAACAA TGTTC TTGTTCTAATA AAATAAAGTAACAAT ydgQ 122262 - 122945 + | NADH-ubiquinone oxidoreductase nth 122956 - 123588 + | endonuclease III TERM 142 124203 - 124190 - g 87 -2.5 -6.17184 | opp_overlap 124191, overlap 124191 AGGACGAAAAAAAAA TTATT TTTC AATAA AAAAATATCAATTGT TERM 143 124845 - 124882 + G 93 -3.1 -6.35605 | gap 1, opp_overlap 124854, overlap 124855 ATAAAAATTTTACAG GAAAACAAGTTTTATTAA TTT TTAATAAA-TTTGTTTTA TTTTTTTTTGTCTTA TERM 144 124855 - 124873 + G 82 -6.2 -5.1285 | opp_overlap 124854, overlap 124845 TACAGGAAAACAAGT TTTATTAA TTT TTAATAAA TTTGTTTTATTTTTT priA 123611 - 125791 + | primosomal protein N' tyrS 125952 - 127220 + | tyrosyl-tRNA synthetase ydiC 127620 - 127228 - | integral membrane protein of SoxR-reducing complex TERM 145 127675 - 127663 - H 81 -3.5 -6.23317 | opp_overlap 127663 ATAAAAATAAAAAAA TATTT AAA AAATA CTTGTATTGTACAGA TERM 146 127704 - 127722 + H 71 -7.6 -3.77278 | opp_overlap 127708, overlap 127699 127708 GAAATATTTATGTTT TAAACAAT ATT ATTGTTTA TTAATTATTTTTATA yb1688 127844 - 128926 + | hypothetical protein aroH 129278 - 130324 + | 3-deoxy-7-phosphoheptulonate synthase TERM 147 130331 - 130356 + F 100 -8.4 -5.30575 | opp_overlap 130329 CGTTTTTAATTCACA TGCTAGTCAA AAACAC TTGGCTAGCA TTTTTTCAATTTTTA TERM 148 130951 - 130933 - g 71 -7.6 -3.63761 | overlap 130931 GAAGCTAGAGAAATA TTTCAAAA ATG TTTTGAAA AATATAAAGTTTCTT TERM 149 132326 - 132308 - g 91 -6.8 -5.42259 | overlap 132310 GCAGTTCTAAAAAAA TATCTGTT CGC AACAGACA AGGTCATAACTTTGG TERM 150 132324 - 132310 - g 76 -7.2 -4.35085 | overlap 132308 AGTTCTAAAAAAATA TCTGTT CGC AACAGA CAAGGTCATAACTTT thrS 130492 - 132420 + | threonyl-tRNA synthetase infC 132424 - 132963 + | translation initiation factor IF-3 rpmI 133050 - 133247 + | 50S ribosomal protein L35 rplT 133290 - 133646 + | 50S ribosomal protein L20 TERM 151 133693 - 133671 - f 85 -9.9 -3.97043 | opp_overlap 133673 TTTAATACATAATAA GAGGGGAAA ATTAA TCTCCCCTC CATTCTAAAAATATT TERM 152 133785 - 133769 - f 77 -8 -4.21933 | opp_overlap 133769, overlap 133784 TTAATTTTAAAATAA GCTTCC TCTAT GGAAGC TTTTTAGTATGTTTA TERM 153 133769 - 133785 + F 84 -8 -4.90217 | opp_overlap 133769 133784 TTAATTTTAAAATAA GCTTCC TCTAT GGAAGC TTTTTAGTATGTTTA TERM 154 134442 - 134417 - g 75 -7.1 -4.07687 | gap 1, opp_overlap 134422, overlap 134420 134422 ATTTTCCCCGGAAAA GTA-TATCGTAA TGA TTACGATATTAC ACATACACCTATGTT TERM 155 134438 - 134420 - g 76 -9 -3.08032 | opp_overlap 134422, overlap 134417 134422 TTCCCCGGAAAAGTA TATCGTAA TGA TTACGATA TTACACATACACCTA TERM 156 134646 - 134675 + G 72 -6.6 -4.11371 | opp_overlap 134646 134648, overlap 134648 GAAAATCCTTAGAAA TATTAGGATGTG GCATGG TACATCCTAATG TTTTGAAAAATGTTA pheS 133841 - 134830 + | phenylalanyl-tRNA synthetase alpha chain pheT 134840 - 137227 + | phenylalanyl-tRNA synthetase beta chain himA 137232 - 137540 + | integration host factor alpha-subunit TERM 157 137543 - 137531 - f 73 -4.9 -5.18158 | opp_overlap 137535, overlap 137535 AATAAAAAAAAATAA CAATT TCT AATTG TACTAGAATAATTTT TERM 158 138412 - 138428 + G 84 -6.7 -5.05601 | TGATAGCAAAGATTT TATTAGT GAT ACTAATA TTTTTATATATCCTG queA 137582 - 138655 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 138696 - 139808 + | queuine tRNA-ribosyltransferase yajC 139833 - 140168 + | subunit of SecD-SecF-Yajc-YidC secretion complex glyS 142292 - 140220 - | glycyl-tRNA synthetase beta chain TERM 159 141312 - 141300 - GT 100 -6.3 -6.06723 | GTTCTTAAAAAAAAA TTCAG CAT CTGAA AGTCGTGCATGCATT glyQ 143205 - 142267 - | glycyl-tRNA synthetase alpha subunit TERM 160 143362 - 143351 - H 72 -3 -5.75342 | opp_overlap 143351 143354, overlap 143354 TTTCTTTAAAAAAAA GATT AAGA AATC TTATATTAAAAGAAT nfo 143901 - 144746 + | endonuclease IV rplY 144781 - 145068 + | 50S ribosomal protein L25 yabI 145908 - 145138 - | conserved inner membrane protein (YabI) TERM 161 145968 - 145978 + H 72 -2.6 -5.75342 | overlap 145959 TTTACGTAAATATTT TATA CTT TATA TTTTTTTTAAAACAA TERM 162 147007 - 146981 - g 71 -8.1 -3.22113 | overlap 146980 ATTGTTTGATAAAAC CTTCTGTGATT CTTAC AAACACAGAAG CAAAGAAAAAGATTT surA 146095 - 147387 + | survival protein SurA precursor ksgA 147441 - 148262 + | dimethyladenosine transferase TERM 163 148246 - 148276 + F 76 -7.2 -4.45261 | opp_overlap 148241 148245 148256, overlap 148256 AAAAATCGAATAATC TTTTAAAAATTAAT TAA ATTATTTTTTAAAA TTTTACATTTATTTA TERM 164 148779 - 148747 - g 80 -6.5 -4.82901 | opp_overlap 148739 148755 148757, overlap 148770 CTTGTCTCATAAAAA TTATGCTTTATTTCT AAA AGAAATATATCATAA TAATATAGATTTTTG apaH 148307 - 149131 + | bis(5'-nucleosyl)-tetraphosphatase folA 149643 - 149158 - | dihydrofolate reductase TERM 165 149703 - 149674 - R 95 -11.1 -4.03413 | opp_overlap 149673 149681, overlap 149681 ATCCCTTCATATAAA TTATAAATATGTT TCAC AACATATTTATAA AAATTGTTTGTTATT TERM 166 149730 - 149756 + r 74 -6.8 -4.51477 | opp_overlap 149733, overlap 149744 149746 TATTTAAGTATCAGT CAATTATTTTTT CGT ATAAAATAATTG TATTTTTTTATGTAT carB 152972 - 149733 - | carbamoyl-phosphate synthase large chain TERM 167 151278 - 151288 + g 82 -2.6 -6.04419 | overlap 151262 ATTAGGACCACCACC TAAT ATG ATTA TTTTTTTATTATTTT carA 154149 - 152986 - | carbamoyl-phosphate synthase small subunit TERM 168 153813 - 153823 + g 71 -4 -5.10933 | CAATATCCGATATTG CAAT AAT ATTG TTTTCTTTTAAATAG dapB 155168 - 154359 - | dihydrodipicolinate reductase TERM 169 154828 - 154840 + g 70 -4.9 -4.67697 | TTTTGAGAATATGAT TTGAT AAT ATCAA TTTCTTCTTTTGAAA lytB 156131 - 155172 - | LytB protein lspA 156679 - 156197 - | lipoprotein signal peptidase ileS 159501 - 156679 - | isoleucyl-tRNA synthetase ribF 160459 - 159518 - | FMN adenylyltransferase TERM 170 159554 - 159575 + g 73 -3.1 -5.43514 | opp_overlap 159559 ATATTTTTGAACTAT TAAAATATC TTGT GATATTTGA TTTTTTAATTCTTTT TERM 171 160317 - 160306 - G 71 -4.4 -4.86731 | opp_overlap 160306 GGGGTTCAAATAAAA CAAC TATA GTTG ATAATTTATATTTTT TERM 172 160548 - 160566 + H 72 -3.2 -5.52986 | overlap 160551 ATATAATATTTCTTA GTATTTTT TTA AAAAAAAC TTTTTTTAATGAAAT TERM 173 160704 - 160688 - g 79 -6.6 -4.66537 | opp_overlap 160687 TTGGCCAATATAAAA GCATCT AAAAA AGATGC ATTAACTTCTGAAAA rpsT 160673 - 160942 + | 30S ribosomal protein S20 TERM 174 160947 - 160990 + T 72 -7.8 -3.45788 | gap 1, opp_overlap 160931 160944 160940 160957, overlap 160949 160954 CTAAAATATAATTTT TTTTA-GAGTATTGCCTCTAA TTT TTAGAAGCAATACTTATAGAA TCTTATCTTGTCAGA TERM 175 160954 - 160982 + T 95 -11.9 -3.37474 | opp_overlap 160944 160940 160957, overlap 160949 160947 ATAATTTTTTTTAGA GTATTGCCTCTAA TTT TTAGAAGCAATAC TTATAGAATCTTATC TERM 176 160979 - 160957 - T 78 -10 -2.62263 | opp_overlap 160949 160954 160947, overlap 160944 160940 ATTTTTTTTAGAGTA TTGCCTCTAA TTT TTAGAAGCAA TACTTATAGAATCTT dnaJ 162126 - 160993 - | DnaJ protein TERM 177 162196 - 162154 - R 72 -6.4 -4.66609 | gap 1, opp_overlap 162157 162159, overlap 162157 162160 TACCTGATTTAAAAA TAATTA-CACGGGCGCAGA AGTTTA TCTACGCCCGTGCTAGTTT AAAGTCTATAATAAT TERM 178 162192 - 162157 - R 100 -11.9 -4.44608 | opp_overlap 162157 162159, overlap 162154 162160 CTGATTTAAAAATAA TTACACGGGCGCAGA AGTTTA TCTACGCCCGTGCTA GTTTAAAGTCTATAA TERM 179 162157 - 162193 + r 74 -8.1 -3.65693 | gap 1, opp_overlap 162154 162157 162160, overlap 162159 CTGATTTAAAAATAA TTA-CACGGGCGCAGA AGTTTA TCTACGCCCGTGCTAG TTTAAAGTCTATAAT TERM 180 162159 - 162190 + r 78 -10.1 -2.93853 | opp_overlap 162157 162154 162160, overlap 162157 GATTTAAAAATAATT ACACGGGCGCAGA AGTTTA TCTACGCCCGTGC TAGTTTAAAGTCTAT TERM 181 162189 - 162160 - R 100 -15.8 -3.18327 | opp_overlap 162159 162157, overlap 162157 162154 ATTTAAAAATAATTA CACGGGCGCAGA AGTTTA TCTACGCCCGTG CTAGTTTAAAGTCTA dnaK 164152 - 162239 - | DnaK protein TERM 182 163486 - 163509 + g 80 -3.9 -5.72622 | CAAGATGTGTATCTC CATTTGTAG CAAGAA CTTCAAATG TTTTTTCTTTATCCA TERM 183 164346 - 164327 - H 80 -2.2 -6.26417 | overlap 164331 164343 CAGTAGAAAAAAAAA TAAAGTTT TACC AAACTATA ACTGAAAATTATAAG nuoA 164487 - 164891 + | NADH dehydrogenase I chain A nuoB 164925 - 165599 + | NADH dehydrogenase beta subunit TERM 184 165783 - 165797 + G 80 -5.8 -5.13722 | AATGATTTATTTGAT TTCTTT GGT AAAGAA TTTTGTTTTCATCAA TERM 185 166291 - 166275 - g 73 -8.1 -3.33711 | opp_overlap 166275 GATTTAGAAATGGAA GGTTTAA AAT TTAAACC TGAGTTATGGGGTAT nuoCD 165690 - 167492 + | NADH dehydrogenase I chain C/D TERM 186 167676 - 167690 + G 73 -8.6 -3.02144 | opp_overlap 167666, overlap 167666 AGCTATTTATGCTAT TGCAGA AAT TCTGCA TATTAACCCCAGTGA nuoE 167515 - 168003 + | ATP synthase subunit E TERM 187 168429 - 168411 - g 80 -9 -3.52073 | opp_overlap 168411 TTTTTAAGAGGAGAA TATGTTCA AGC TGAACATA TTTTAAAGCAATCTA TERM 188 168411 - 168429 + G 86 -9 -4.09243 | opp_overlap 168411 TTTTTAAGAGGAGAA TATGTTCA AGC TGAACATA TTTTAAAGCAATCTA nuoF 168000 - 169334 + | NADH dehydrogenase I chain F TERM 189 169364 - 169378 + F 78 -4.4 -5.72616 | opp_overlap 169362 169364, overlap 169353 169349 TTTTTATAGAAAATA TTTATT TTA AATAAA TTTTTTTATATAAAT TERM 190 172096 - 172077 - g 70 -5 -4.75174 | overlap 172081 TATTTAACTGAAAAA CAAATAGG TTTG CCTATTGG AAGAAAAGGATTTCC TERM 191 172092 - 172081 - g 71 -4.4 -4.91473 | overlap 172077 TAACTGAAAAACAAA TAGG TTTG CCTA TTGGAAGAAAAGGAT nuoG 169428 - 172148 + | NADH dehydrogenase gamma subunit nuoH 172160 - 173128 + | NADH dehydrogenase subunit H nuoI 173153 - 173695 + | NADH dehydrogenase subunit I nuoJ 173705 - 174217 + | NADH dehydrogenase I chain J nuoK 174248 - 174550 + | NADH dehydrogenase I chain K TERM 192 175129 - 175149 + G 78 -8.5 -3.83864 | opp_overlap 175128 AGAGAATTTAATAGT TTTAATTTC CAA GAAATTAAA TTCTTATCAAGTTTT TERM 193 176174 - 176195 + G 73 -3.1 -5.4433 | overlap 176176 GGGGTTTTAATTGGT TTTACAAAA TATC TTTTGTATA TTTTTATTTATATAT TERM 194 176176 - 176193 + G 70 -5.7 -4.33302 | overlap 176174 GGTTTTAATTGGTTT TACAAAA TATC TTTTGTA TATTTTTATTTATAT nuoL 174547 - 176391 + | NADH dehydrogenase I chain L TERM 195 176989 - 176979 - g 80 -4 -5.61824 | TAAAACTGAAAAAAA GAAA AAT TTTC TAGCTGCTAATAAGT nuoM 176488 - 178005 + | NADH dehydrogenase I chain M nuoN 178063 - 179472 + | NADH dehydrogenase I chain N TERM 196 179525 - 179510 - f 72 -3.4 -5.6473 | overlap 179502 179520 ATAATACTAAAAAAA TTTTTA CTAA TAAAAA AGGTATTTTTAGTAG TERM 197 179560 - 179572 + F 80 -4.9 -5.50499 | TTTTTTATATGCTAT TACTT TTG AAGTA TTTTTTTCGATCTAA TERM 198 179652 - 179624 - f 86 -6.3 -5.76633 | opp_overlap 179624 GTATATACAAAAAAA TAAAAAATAATTT TTA AAATTTTTTTTTA TTATAATTTTTATAT TERM 199 180033 - 180008 - f 84 -7.1 -5.26316 | gap 1, opp_overlap 180008 180007 180011, overlap 180011 CTAGTTCATAAAAAA CAG-TATTAGAA TAT TTCTAATATCTG ATTTTTTAGAATAAG TERM 200 180466 - 180453 - f 71 -2.5 -5.72118 | opp_overlap 180425, overlap 180419 180446 AAAAAATATAAAAAA TAAAA AATT TTTTA CCATAACGTATTATA TERM 201 180872 - 180892 + G 75 -8.4 -3.41416 | overlap 180870 180859 TAGAATTAATGGGTT TGTTCTTC ATGAA GAAGAACA TATTGATTCTTTTCA TERM 202 181350 - 181360 + G 72 -6.8 -4.12475 | GTACCATTATCGAGT GCAG CTA CTGC TTTATCTACTCTATA folC 180597 - 181832 + | dihydrofolate synthase prsA 183358 - 182411 - | ribose-phosphate pyrophosphokinase ychB 184362 - 183478 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 203 183619 - 183606 - G 70 -3.1 -5.33866 | CAAATTCAGAAAAAA CACAA GATC CTGTG CCAGTCATGCGTGAA TERM 204 184522 - 184536 + H 72 -4.4 -5.40474 | opp_overlap 184522 184526 ATACATTGTTTAATA TTAATT AAA AATTAA TTTTTTTAAAACACT TERM 205 185228 - 185212 - g 75 -5.2 -4.87318 | opp_overlap 185212 CCTAAAACTGAAAAA GAAGAA ATTAA TTCTTC TGATTTAAAAATTGA prfA 184570 - 185655 + | peptide chain release factor 1 hemK 185652 - 186485 + | HemK protein ychA 186645 - 187454 + | predicted transcriptional regulator nadE 188268 - 187462 - | NAD(+) synthetase ackA 188352 - 189569 + | acetate kinase TERM 206 190635 - 190609 - g 100 -7.4 -5.71712 | opp_overlap 190580, overlap 190580 190611 TTTTACAGAAAAAAA TACAATAGAGAT TTT ATCTCAATTGCA AAACTTTAACTTTGA TERM 207 190633 - 190611 - g 80 -7.8 -4.50122 | opp_overlap 190580, overlap 190580 190609 TTACAGAAAAAAATA CAATAGAGAT TTT ATCTCAATTG CAAAACTTTAACTTT pta 189614 - 191740 + | phosphate acetyltransferase yfaE 192035 - 191772 - | 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance (YfaE) TERM 208 191838 - 191860 + g 91 -11.4 -3.07291 | opp_overlap 191838 191842, overlap 191843 191854 TTCTCGTTCTTTAAA TAAAGCAGCC ATA GGCTGTTTTA TTAAATAAAATACTT TERM 209 191860 - 191838 - G 80 -9.2 -3.53012 | opp_overlap 191838 191843 191854, overlap 191842 TTCTCGTTCTTTAAA TAAAGCAGCC ATA GGCTGTTTTA TTAAATAAAATACTT TERM 210 191856 - 191842 - G 70 -5.6 -4.41348 | opp_overlap 191838 191843 191854, overlap 191838 CGTTCTTTAAATAAA GCAGCC ATA GGCTGT TTTATTAAATAAAAT TERM 211 191843 - 191855 + g 93 -9.1 -4.67982 | opp_overlap 191842 191838, overlap 191838 191854 GTTCTTTAAATAAAG CAGCC ATA GGCTG TTTTATTAAATAAAA nrdB 193168 - 192038 - | ribonucleotide-diphosphate reductase beta subunit nrdA 195521 - 193236 - | ribonucleotide-diphosphate reductase alpha subunit gyrA 198086 - 195594 - | DNA gyrase subunit A TERM 212 196148 - 196171 + g 90 -3.3 -5.94597 | TTCCTGCAAATCTCG GTTTTTTAA ATTGAC TTAAAGAAC TTTTTTTTACTATTC TERM 213 196385 - 196369 - G 71 -4.5 -4.91109 | CCGCGACTAGAAAAA CATAATA TAG TATCATG CGTATTTGCTATTAC TERM 214 197006 - 197028 + g 100 -9.3 -5.25893 | opp_overlap 197006 197003 TACGTCTTATAATGA TTTCTTGTC TATGT GACAAGAAA TTTTTTAATATCTCT TERM 215 197028 - 197006 - G 77 -9.3 -2.8294 | opp_overlap 197006, overlap 197003 TACGTCTTATAATGA TTTCTTGTC TATGT GACAAGAAA TTTTTTAATATCTCT TERM 216 198616 - 198598 - g 80 -7.6 -4.55209 | TAGAGAGGAAACAAA TAAAAAAC CAA GTTTTTTA TCAAATTTTTTTAAA TERM 217 198699 - 198685 - g 78 -2.8 -5.83822 | CATATTGAAAAAAAA GGAAAA TAT TTTACC CTCTAACTATTCCAG yba2 198353 - 199069 + | hypothetical protein TERM 218 199185 - 199148 - T 100 -9.4 -5.46276 | opp_overlap 199152 199176 AATAGATATAAAAAA TAAAGCCAGCATAAAA TATTTT TTTTTTGCTGACTTTA GCTCTCATTAAGAAT ahpC 199786 - 199193 - | alkyl hydroperoxide reductase TERM 219 199707 - 199727 + g 81 -7 -4.63993 | opp_overlap 199707, overlap 199720 GAATACTTTTTAAGA TCAAATTG CTCAA CAATTTGA TTGTTTTTTAAAATT TERM 220 199720 - 199730 + g 71 -4 -5.10029 | opp_overlap 199707, overlap 199707 GATCAAATTGCTCAA CAAT TTG ATTG TTTTTTAAAATTGCT ung 199864 - 200526 + | uracil-DNA glycosylase TERM 221 200514 - 200503 - T 95 -4.4 -6.71862 | opp_overlap 200503 200497 AAAACAAAAAAAAAA CCAA TTAA TTGG TTTTTGATTTAAAAA TERM 222 200515 - 200562 + T 79 -9.8 -3.23855 | gap 1, opp_overlap 200530, overlap 200497 200530 AAACCAATTAATTGG TTTTTG-ATTTAAAAATAGAAAA AAT TTTTCTATTTTTAAATGTGAAAA ATTATTTTTGAAAAA TERM 223 200546 - 200530 - T 76 -6.7 -4.65895 | opp_overlap 200515 200530 TTTTTGATTTAAAAA TAGAAAA AAT TTTTCTA TTTTTAAATGTGAAA TERM 224 200530 - 200546 + T 76 -6.7 -4.70659 | opp_overlap 200530, overlap 200515 TTTTTGATTTAAAAA TAGAAAA AAT TTTTCTA TTTTTAAATGTGAAA grpE 201168 - 200602 - | heat shock protein GrpE2 TERM 225 200742 - 200752 + g 71 -2.6 -5.47399 | CGTGAATGTCAGGAT TAAA AAC TTTA TTTTTTTGACCTTCA TERM 226 201838 - 201850 + G 82 -9.1 -3.77832 | TTGTTTCAACACCCA CCGGT TCT ACCGG TTATTCACTTTCGGC yfjB 201285 - 202163 + | NAD kinase monomer (YfjB) smpA 202296 - 202604 + | small membrane protein A ydhD 203141 - 203467 + | glutaredoxin 4 (YdhD) rnt 204276 - 203611 - | ribonuclease T TERM 227 204720 - 204702 - g 91 -6.8 -5.54907 | TTTAGAAAAGAAAAA TGCATTAC GTA ATAATGCA GGAGGTCATATAAAT sodA 204496 - 205107 + | superoxide dismutase TERM 228 205202 - 205221 + F 91 -6.6 -5.77988 | opp_overlap 205192 205202, overlap 205192 ATAATTTTTAAAAAA CATATAAT ATAT ATTATATG TTTTTTTATATCTCT TERM 229 205221 - 205202 - f 79 -6.6 -5.06103 | opp_overlap 205202 205192, overlap 205192 ATAATTTTTAAAAAA CATATAAT ATAT ATTATATG TTTTTTTATATCTCT pth 205295 - 205828 + | peptidyl-tRNA hydrolase TERM 230 206337 - 206320 - g 87 -2.7 -6.2845 | overlap 206322 AATTACAAAAAAAAA CATTGTT AAAA AACAAAG AAACACAAGAAAAAA ychF 205869 - 206957 + | GTP-binding protein thrC 208323 - 207034 - | threonine synthase thrB 209258 - 208329 - | homoserine kinase thrA 211729 - 209279 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 231 210143 - 210158 + g 70 -4.8 -4.67234 | ATTAAATTTTTGAGT TGATTT TTTA AAATCA TTTTTCCAGTTAGAT TERM 232 210307 - 210333 + g 78 -2.4 -5.7946 | opp_overlap 210331, overlap 210331 TACTGCCAATTCCAC CTATTCCTAT TAAAAAC ATATGAATAG TTTTTTTATTAAAAA TERM 233 211192 - 211208 + g 84 -3.8 -5.86332 | opp_overlap 211192 TATTACTTTGATTAA TATTCA TGTTC TGAATA TTTTTTTTAGATTCA TERM 234 211897 - 211921 + H 80 -9.5 -3.7948 | overlap 211896 TAAATACGTAAAGTG TATTACCTAAT TAT ATTAGGTAGTA TCTTTTAATATAATT TERM 235 212182 - 212194 + H 73 -4.9 -5.10497 | opp_overlap 212182, overlap 212186 ATATTAAAAAGAACT GTTTT TTA AAAAC TTTTTTAGATGCATT TERM 236 212319 - 212333 + H 75 -4.4 -5.63857 | opp_overlap 212321, overlap 212310 212316 ATTGTGTATTTCTAA TATAAT ATT ATTATA TTTTTTTAAGTTTTT TERM 237 212822 - 212840 + G 70 -3.2 -5.31877 | overlap 212823 CGTTGATTTTATAGG TTTTTCTA TCT TAGAAAAC TTTTTTATAGTAGGT hpt 212388 - 212924 + | hypoxanthine phosphoribosyltransferase TERM 238 212936 - 212948 + T 78 -3.5 -5.88565 | opp_overlap 212926 212930, overlap 212930 ATAAGTAAATTTTAA TAATT TAA AATTA TTTTTTTGTTATCAA panC 213789 - 212932 - | pantoate-beta-alanine ligase TERM 239 213296 - 213308 + g 80 -6.3 -4.99861 | opp_overlap 213295 ATCATATAATTCAAC TCCTT TAC AAGGA TTTTTATAATTAATA TERM 240 213705 - 213719 + g 93 -4.3 -6.01187 | opp_overlap 213698 GTAAATTACCCATTG TAGGA ACTAG TCCTA TTTTTTTATTTGATT panB 214595 - 213804 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase dksA 215166 - 214711 - | DnaK suppressor protein TERM 241 215862 - 215872 + G 71 -4 -5.06414 | TAGACAAAATGCATT TTGA AGC TCAA TTTTTATTAGGAGAG truA 215423 - 216223 + | pseudouridylate synthase I TERM 242 217528 - 217516 - g 70 -4.9 -4.77908 | AAAAGAAAAAAAAGA CTAAA GGA TTTAG AAGTTGCTATGATCG mrcB 216295 - 218577 + | penicillin-binding protein 1b TERM 243 218597 - 218587 - f 72 -2.6 -5.79595 | TTTTAAAATAAAAAA TAAA ATT TTTA TTCAAGAGAGATGGT secA 218807 - 221434 + | translocase TERM 244 221660 - 221670 + G 71 -2.6 -5.51402 | GTTGGAATTATTGTC TTAA AAA TTAA TTTTTTTCAATATAT mutT 221510 - 221884 + | mutator MutT protein yacE 222520 - 221867 - | dephospho-CoA kinase TERM 245 221977 - 221987 + g 82 -2.6 -6.09888 | opp_overlap 221977 AAATATATAGATTAA TTTT TTT AAAA TTTTTTTTATTAAAA TERM 246 222063 - 222081 + g 77 -6.1 -4.71223 | opp_overlap 222059, overlap 222059 AACGCAATAATTTTT TTAGCTT CTAAA AAGCTAA TTTTGTCTCTTCTGA TERM 247 223473 - 223459 - g 73 -4.3 -5.02231 | opp_overlap 223461 GAAAAACAGTAAAAA TACCA TTTCG TGGTA GTGTAGATAGTACTA guaC 222576 - 223625 + | guanosine 5'-monophosphate oxidoreductase TERM 248 223660 - 223703 + F 95 -7.2 -5.85178 | opp_overlap 223660 TTTTACATTTTAAAA TCAATAAAATTAATTATA CTTATATA TATATTTAATTTTATTGA TTTTTTTTAGATGTT TERM 249 223703 - 223660 - f 77 -7.9 -4.16943 | opp_overlap 223660 TTTTACATTTTAAAA TCAATAAAATTAATTATAC TTATAT ATATATTTAATTTTATTGA TTTTTTTTAGATGTT aceE 223851 - 226514 + | pyruvate dehydrogenase E1 component aceF 226518 - 227735 + | dihydrolipoamide acetyltransferase TERM 250 228118 - 228101 - g 100 -5.7 -5.9873 | GTATGAGAAAAAAAA GAAAAAT AAGA ATTTTTC AAGGCCATGCTATTT lpdA 227779 - 229200 + | dihydrolipoamide dehydrogenase TERM 251 229207 - 229221 + T 78 -4.4 -5.75342 | AATAAATAATGATTT TTTTTT ATT AAAAAA TTTTTTTTAGAAAAA TERM 252 229273 - 229237 - T 100 -16.3 -4.82901 | opp_overlap 229237 229272, overlap 229242 TTTTTTTTAGAAAAA GAAAAGATTATAGAAAT TAA ACTTCTATAATCTTTTC TTTTTTTTAATAAGA TERM 253 229237 - 229273 + T 100 -14.1 -5.86061 | opp_overlap 229237 229242, overlap 229272 TTTTTTTTAGAAAAA GAAAAGATTATAGAAAT TAA ACTTCTATAATCTTTTC TTTTTTTTAATAAGA TERM 254 229268 - 229242 - T 100 -10.4 -5.35224 | opp_overlap 229237, overlap 229237 TTTAGAAAAAGAAAA GATTATAGAAAT TAA ACTTCTATAATC TTTTCTTTTTTTTAA speD 230170 - 229373 - | S-adenosylmethionine decarboxylase proenzyme speE 231049 - 230189 - | spermidine synthase pfs 232023 - 231325 - | 5'-methylthioadenosine nucleosidase yadR 232431 - 232087 - | essential respiratory protein A (YadR) ftsZ 233819 - 232665 - | cell division protein FtsZ TERM 255 233887 - 233917 + r 78 -8.6 -3.90744 | opp_overlap 233884 TGTTTTTAAAATTCT TTTTTAAACCAATT ATT AATTCGTTTAAAAA TTATTTCAAAAAAAG ftsA 235133 - 233877 - | cell division protein FtsA TERM 256 235268 - 235258 - R 72 -2.6 -5.76633 | overlap 235265 235267 GTATATATAAAAAAA TATA ACA TATA AGATAAATATCTTAT murC 237702 - 236248 - | UDP-N-acetylmuramate-alanine ligase TERM 257 236898 - 236908 + g 71 -4 -5.05113 | TTATATAAAAATGTC CAAT AAA ATTG TTTTGTTTATATAAA TERM 258 237662 - 237690 + g 70 -4.8 -4.71186 | opp_overlap 237666, overlap 237650 237650 TTATTTTTTTTTTCA GAAATAAAAAAA TTAAT TTTTTTTATATC TTTTATATTCATACT murG 238809 - 237745 - | UDP-N-acetylglucosamine-N-acetylmuramyl transferase ftsW 240005 - 238806 - | cell division protein FtsW murD 241324 - 240002 - | UDP-N-acetylmuramoylalanine-D-glutamate ligase TERM 259 240224 - 240245 + g 70 -3.2 -5.27399 | AAAACAGTAAATTTT TATTTTTA AAGTTC TAAAAATA TTTTTTAATATATTA mraY 242397 - 241324 - | phospho-N-acetylmuramoyl-pentapeptide- transferase TERM 260 242461 - 242475 + r 95 -3.6 -6.67286 | TACTACGAGATCCTT TAACTA ATA TGGTTA TTTTTTTTTTCTTTA murE 245250 - 243754 - | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase TERM 261 245266 - 245279 + r 80 -3.9 -5.95539 | TCAGTTCCTTTTATT TGATT TTAA AATCA TTTTTTTATTTGACA ftsI 246990 - 245251 - | cell division protein FtsI TERM 262 245370 - 245354 - G 78 -10.1 -2.67364 | opp_overlap 245353, overlap 245353 245352 ATATTACTAAAAACT GGAGCAG AAA CCGCTCC TCCATAATATTTTTT TERM 263 246954 - 246970 + g 86 -2.3 -6.28401 | overlap 246956 TATAATTTATTTGTT TTGATTT TAA AAATCTA TTTTTTTCTTTTTTA TERM 264 246956 - 246968 + g 70 -4.9 -4.70159 | overlap 246954 TAATTTATTTGTTTT GATTT TAA AAATC TATTTTTTTCTTTTT TERM 265 247022 - 247038 + r 81 -5.3 -5.67063 | opp_overlap 247033, overlap 247018 ATCAATGTACATTTA TTTTTAT AAA ATAAAAA TTTTTTTATGCTAAA ftsL 247308 - 247055 - | cell division protein yabC 248249 - 247311 - | hypothetical protein TERM 266 247748 - 247759 + g 73 -4.4 -5.06414 | GACTTCTACGTTTGA TAGC ATAA GCTA TTTTTCTTGAAAAAC ilvH 248847 - 248371 - | acetolactate synthase small subunit ilvI 250567 - 248852 - | acetolactate synthase large subunit TERM 267 251464 - 251475 + H 72 -3 -5.79635 | opp_overlap 251464, overlap 251454 TTGACTTCCGGAAAG GAAA ATTT TTTC TTTTATTTTTTTTTT htrA 252185 - 253621 + | protease Do precursor TERM 268 253634 - 253657 + T 100 -8 -5.77677 | overlap 253635 TAATAATTTTATAGT TCCGCCCGAA CAAA TACGGGCGGC TTTTTTCTTATTTTA TERM 269 253635 - 253656 + T 95 -11.5 -4.02946 | overlap 253634 AATAATTTTATAGTT CCGCCCGAA CAAA TACGGGCGG CTTTTTTCTTATTTT dapD 254489 - 253665 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 270 253963 - 253945 - G 73 -5.4 -4.71426 | CGGGCACCAATAAAA CAATTATC TTC AATAATTG TAGGATTATTTTGAA map 255344 - 254550 - | methionine aminopeptidase rpsB 255607 - 256341 + | 30S ribosomal protein S2 TERM 271 256928 - 256911 - g 78 -5.7 -4.86731 | GTTCGTTAAATAAAA CAATATT AAAA AATATTG CAATGCATATAGCTG tsf 256418 - 257224 + | elongation factor Ts TERM 272 257600 - 257614 + G 72 -7.2 -3.91144 | opp_overlap 257602 GTCTGATGTCTGCAA TACCAT TAA ATGGTA TTTGTGAGATATACA pyrH 257275 - 258003 + | uridylate kinase frr 258083 - 258640 + | ribosome recycling factor dxr 258723 - 259919 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase uppS 260012 - 260767 + | undecaprenyl pyrophosphate synthetase TERM 273 261151 - 261135 - g 77 -5.1 -5.2189 | overlap 261138 TGAAGCATTAAAAAA CATTCCT TTT AGGATTG GAAGTACAATATCTC TERM 274 261542 - 261530 - g 75 -3.5 -5.4659 | overlap 261536 GAACAGAAATAAAAA TTAAT AGT ATTAA AATACTCGGCGTTCA yaeT 261001 - 263394 + | YaeT fabZ 263521 - 263976 + | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase TERM 275 264191 - 264205 + G 71 -7.2 -3.82084 | opp_overlap 264190 264191 264193 ATATGGCTCATAAAC TAGGTT TAA AACCTA TTATTGGTATTACAG TERM 276 265246 - 265267 + G 74 -8.1 -3.57119 | opp_overlap 265246 265248 TTTTGTATGGAAAAA CGTGATCAA GTAA TTGATCATG TTTCAGAGATATATG TERM 277 265267 - 265246 - g 75 -5.9 -4.65895 | opp_overlap 265246, overlap 265248 TTTTGTATGGAAAAA CGTGATCAA GTAA TTGATCATG TTTCAGAGATATATG dnaE 264013 - 267498 + | DNA polymerase III alpha chain TERM 278 267562 - 267528 - T 89 -8.2 -5.20781 | opp_overlap 267528 267530 267539, overlap 267518 267530 267553 TATTATAAAATAAAA TTTTAATCAAATTTTT TAA AAAAATTTGATCAATA ATATTGTCAAGTAGA TERM 279 267560 - 267530 - T 81 -10.8 -2.80878 | opp_overlap 267528 267530 267539, overlap 267518 267528 267553 TTATAAAATAAAATT TTAATCAAATTTTT TAA AAAAATTTGATCAA TAATATTGTCAAGTA TERM 280 267530 - 267560 + T 71 -8.6 -2.8055 | opp_overlap 267518 267530 267528 267553, overlap 267528 267539 TTATAAAATAAAATT TTAATCAAATTTTT TAA AAAAATTTGATCAA TAATATTGTCAAGTA proS 269345 - 267627 - | prolyl-tRNA synthetase TERM 281 269933 - 269955 + G 76 -4.2 -5.55855 | opp_overlap 269933 269936, overlap 269936 269938 ATTTATTAAAAATAT TAATGTCTCT AAA AGAGATACTA TTTTCTTTTTTTCCA flhB 269686 - 270837 + | flagellar biosynthetic protein FlhB TERM 282 271717 - 271765 + G 83 -6.9 -4.93696 | TATTTTATTAAGTGC GATAGTATTAGGAGTTCTTGG TTTAGTT CCAGGAATGCCAAATATTATC TTTTTAGTATTTACA flhA 270830 - 272920 + | flagellar biosynthetic protein FlhA argS 274768 - 273044 - | arginyl-tRNA synthetase TERM 283 273188 - 273171 - G 72 -7.1 -3.95627 | AAAAGTATAGAACAA TTCTCAT AAAA ATGAGAA AAACTAGTTGCAAGA TERM 284 273576 - 273607 + g 80 -7.5 -4.50976 | gap 1 ATTAAACGCATCGCC CTTTCTGTAGCTTC ATCAA GAAG-TGCAGAAAG TTTTATAGTATCACC TERM 285 275825 - 275805 - R 74 -8.3 -3.5594 | opp_overlap 275800 AAGTCAGGTGTGAAA TCCCTAGGC TCA ACCTAGGAA CTGCATTTGAAACTG TERM 286 276708 - 276725 + r 75 -9.1 -3.07291 | opp_overlap 276708 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT gloB 277707 - 276952 - | probable hydroxyacylglutathione hydrolase TERM 287 277423 - 277405 - G 89 -7.6 -5.14525 | opp_overlap 277409, overlap 277417 277420 AAAAAAAACATAAAA TATCTTAT CTA ATAAGATA ATCCTATCTCCATGA TERM 288 277674 - 277691 + g 77 -2.1 -5.90981 | gap 1, opp_overlap 277673 277688, overlap 277688 GAACCCAAACATAGT TATCTGAT AAA ATC-GATA TTTTTTTTAATATCA dnaQ 278270 - 278983 + | DNA polymerase III epsilon chain TERM 289 279098 - 279082 - f 70 -7.9 -3.21593 | CAGTTGGTTAGAATA CCGGCCT GTC ACGCCGG GGGTCGCGGGTTCGA TERM 290 279282 - 279264 - g 75 -3.3 -5.38348 | overlap 279257 AAAAATATTAAAAAA TTTTTTA GAAGA TAAAAAA CAAATAGAAAATATT lpcA 279208 - 279789 + | phosphoheptose isomerase TERM 291 279991 - 279975 - g 75 -3.7 -5.41143 | opp_overlap 279974, overlap 279977 GATTGGTTAAAAAAA TTCATTC TTG GAATGGA ATCATTGCTGTAAGT gpt 279896 - 280372 + | xanthine phosphoribosyltransferase grpE1 280473 - 281057 + | heat shock protein GrpE1 TERM 292 281069 - 281121 + T 72 -6.2 -4.65078 | gap 1 ATAAAAATAATATGT TTTTTAGGTTTAATAATATTGTAAA GTAT TTTA-ATTGTTATTAAATCTAAAAA TTTTATTAAAAATAT yfjF 281435 - 281136 - | hypothetical protein TERM 293 281424 - 281436 + g 72 -4.9 -4.98758 | GACAACGGTTACTTT TATGA TCT TCATA TTTTTATAAATTTTT smpB 281529 - 282017 + | SsrA-binding protein TERM 294 282107 - 282095 - g 72 -3.3 -5.28942 | overlap 282096 TATGCTAAAGAAAAA GGGGA AAT TCCCA TAGGTGCAATATTAG TERM 295 282399 - 282376 - g 71 -4 -5.14965 | gap 1 ATTCTCATTAAAAAA TCTGTTTTGCG ACC CACAAAA-AGA TTACAAATTAGATAT yfhC 282026 - 282511 + | tRNA-specific adenosine deaminase monomer (YfhC) acpS 282892 - 282512 - | holo-[acyl-carrier protein] synthase TERM 296 282848 - 282838 - G 71 -2.6 -5.45726 | CATACTTTAAAAAAA TATT TTT AATA CGTAATATTTCTACA TERM 297 282947 - 282994 + r 83 -10.4 -3.58176 | opp_overlap 282942 282941 282957, overlap 282946 282948 282976 282978 TAAAAATTATTGATT TTTTTTAAAATCAGTTAAAAAT TTGA ACTTTTAACTAATTTTAAAAAA TTAGTTATATTATTC TERM 298 282978 - 283001 + r 76 -8.4 -3.57523 | opp_overlap 282957, overlap 282947 282976 AAAAATTTGAACTTT TAACTAATTT TAAA AAATTAGTTA TATTATTCTATTAAT era 283869 - 283018 - | GTP-binding protein Era rnc 284546 - 283866 - | ribonuclease III lepB 285621 - 284677 - | signal peptidase I TERM 299 284895 - 284907 + g 72 -4.9 -5.00027 | GCATATTTTTTTGTT GAAAA TAA TTTTC TTTTGTATTTTTAAT lepA 287469 - 285637 - | GTP-binding protein LepA TERM 300 286704 - 286721 + g 78 -8.5 -3.73953 | TTTTATTTAATTTTT TAGGTGT AAAA ACACCTA TTTGATCAACATAAT TERM 301 287873 - 287885 + G 70 -4.9 -4.72986 | opp_overlap 287871 287880, overlap 287871 AATTAAATATATATC TTCAT AAG ATGAA TTTTTCCTCAGAATA trmU 287665 - 288771 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ycfC 288807 - 289442 + | predicted lysogenization regulator (YcfC) purB 289481 - 290851 + | adenylosuccinate lyase TERM 302 291521 - 291510 - g 91 -2.2 -6.32216 | ACACATAAAAAAAAA CACC CGGC AGTG CAAGCATTTCGTTAT mltE 290875 - 291540 + | membrane-bound lytic murein transglycosylase E fabI 291654 - 292436 + | enoyl-[acyl-carrier-protein] reductase (NADH) rnb 292623 - 294572 + | exoribonuclease II ychE 294681 - 295328 + | predicted inner membrane protein (YchE) TERM 303 295932 - 295908 - g 72 -6.7 -4.14158 | GACACAAATAAAAGA TTTTAATTCAA ATG TTAAATTAAAA GATGTAAGGTTTATT lipB 295366 - 296001 + | lipoate-protein ligase B TERM 304 296207 - 296169 - g 90 -5.6 -5.69023 | overlap 296176 AAAATATTAAAAAAA TTAAATATTATCAATATT AAA AATCTTGATAACATTAAA GAAAAATTAAAAAAA lipA 296121 - 297092 + | lipoyl synthase TERM 305 297859 - 297826 - g 76 -8.4 -3.56346 | opp_overlap 297833, overlap 297829 AGAATATAAAATAGA TTACATAGTAATAG GACGTT CTATTACTATGTCA AAAAATCCAATTAAA TERM 306 297856 - 297829 - g 80 -10.1 -2.88375 | opp_overlap 297833, overlap 297826 ATATAAAATAGATTA CATAGTAATAG GACGTT CTATTACTATG TCAAAAAATCCAATT pyrF 297197 - 297907 + | orotidine 5'-phosphate decarboxylase TERM 307 298397 - 298382 - g 74 -2.6 -5.66989 | opp_overlap 298387 TAAATATTAAAAAAA TTCGTT TATT AACAAA TAATCCATTTAAAGT ribA 297955 - 298539 + | GTP cyclohydrolase II protein hns 299050 - 298643 - | DNA-binding protein H-ns cls 300856 - 299396 - | cardiolipin synthetase TERM 308 300518 - 300530 + g 77 -6.3 -4.67353 | GCTTTTAATTCCGTG TAGAC CTT GTCTA TTTTTACATAACTGA TERM 309 300897 - 300910 + r 77 -2.5 -6.12458 | TGTCAAAAGATCTTC TATTT AATT AAATA TTTTTTATTTTTTTA yciA 301644 - 301237 - | acyl-CoA thioesterase (YciA) TERM 310 301339 - 301349 + g 71 -2.6 -5.53991 | GTATTGACCTAATGG TTTA GAA TAAA TTTTTTTAATCCATA yciB 302214 - 301681 - | predicted inner membrane protein (YciB) yciC 302985 - 302242 - | predicted inner membrane protein (YciC) TERM 311 302728 - 302763 + g 73 -4.4 -5.01042 | gap 1, opp_overlap 302733, overlap 302733 302736 ACTAATTAATGATTC CAT-AATTTTTAAAATA GAA TATTTTAATAATTCATG TTTTTCATTTAAATT TERM 312 302956 - 302945 - G 81 -3 -5.75342 | overlap 302921 TTTTTGTAAAAAAAA TGAT GCGT ATCA TGACGTAATTTATTT trpA 303899 - 303090 - | tryptophan synthase alpha chain TERM 313 304646 - 304665 + r 71 -7.2 -3.82503 | opp_overlap 304639, overlap 304644 CCCATTAATTTCATA CGAAACAC ATTT GTGTTTTG TCTTTTAATATCTTT TERM 314 304861 - 304871 + r 72 -2.6 -5.74684 | TAGTAAATCCTCTCT TTTA AGA TAAA TTTTTGTTTTTGTTC trpC 306484 - 305123 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 307493 - 306465 - | anthranilate phosphoribosyltransferase TERM 315 307604 - 307648 + H 87 -10.5 -3.96148 | opp_overlap 307610 307619, overlap 307613 307619 ATGTGAATAATTCAA TTTAAATTTTAAAAACTTTAT TTT ATAAAGTTTTTAAAATCAAAA TTTATACTAAAAAAC TERM 316 307642 - 307610 - H 100 -13.9 -3.78811 | opp_overlap 307604 307613 307619, overlap 307619 ATAATTCAATTTAAA TTTTAAAAACTTTAT TTT ATAAAGTTTTTAAAA TCAAAATTTATACTA TERM 317 307633 - 307619 - H 72 -5.8 -4.70879 | opp_overlap 307613 307604 307619, overlap 307610 TTTAAATTTTAAAAA CTTTAT TTT ATAAAG TTTTTAAAATCAAAA TERM 318 307619 - 307633 + H 72 -5.8 -4.62069 | opp_overlap 307619 307610, overlap 307613 307604 TTTAAATTTTAAAAA CTTTAT TTT ATAAAG TTTTTAAAATCAAAA TERM 319 308480 - 308495 + G 70 -5.4 -4.60255 | TGTTTTTTTAATTTT TCCAGT GATT GCTGGA TTTTTAGAAAATTAT yedA 307728 - 308651 + | hypothetical protein TERM 320 309235 - 309225 - g 82 -2.6 -6.07627 | ATGTTCAAAAAAAAA TAAA TGG TTTA AAGGTGTTTTATGTG yciL 308680 - 309432 + | 23S rRNA pseudouridine synthase (YciL) sohB 309507 - 310517 + | possible protease SohB TERM 321 310780 - 310754 - g 87 -2.4 -6.12458 | overlap 310755 310768 GAAAAAAACAAAAAA TTTTTAAATGAA AAT TTCATTGAAAAG ACTAATGAGAATAAA topA 310604 - 313189 + | DNA topoisomerase I suhB 314042 - 313242 - | extragenic suppressor protein SuhB TERM 322 313697 - 313708 + g 76 -4.4 -5.26119 | opp_overlap 313697 TAGGATCATATATTA CAGA AATT TCTG TTTTATTTTTCACGA yfgB 314289 - 315380 + | 23S rRNA m2A2503 methyltransferase (YfgB) gcpE 315431 - 316537 + | GcpE protein TERM 323 317330 - 317312 - g 70 -6.8 -3.95554 | overlap 317310 317316 TCATGGAATAAAATA TAAATGCA ATC CGCATTTA GTAAGAGGATTAGAC hisS 316563 - 317834 + | histidyl-tRNA synthetase TERM 324 320179 - 320203 + T 76 -6 -4.99861 | opp_overlap 320181 320197, overlap 320197 AGAAGAATTTTCCAA TATTTTATTT GAAGA AAATAAAATA TTTTTATGATTAATA bioB 321303 - 320272 - | biotin synthetase TERM 325 321253 - 321269 + g 70 -2.3 -5.50774 | opp_overlap 321245 321253, overlap 321247 CATAAGATTAAAAAA TGGTTTT TTA AAAAGCA TTTTTGTTTCTTCTA bioA 321382 - 322668 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase ybhE 323681 - 322677 - | 6-phosphogluconolactonase (YbhE) mfd 326243 - 323805 - | transcription-repair coupling factor TERM 326 327125 - 327111 - g 78 -7.2 -4.47259 | overlap 327105 ACTATAATATTAAAA GTGTTT TAA AAACAC TTAAGCCTGGATATT lolC 326717 - 327916 + | LolCDE ABC lipoprotein transporter (YcfU) lolD 327909 - 328595 + | LolCDE ABC lipoprotein transporter (YcfV) TERM 327 328661 - 328646 - f 82 -4.8 -5.71983 | TTAATTACAAAAAAA TTTTCT CTTA AGAAAA ACAAAAATTATTTAA TERM 328 328873 - 328863 - f 75 -2.6 -5.9873 | GTATGATAAAAAAAA TAAA TAT TTTA CCAGGAATTACTTAT gapA 329920 - 330930 + | glyceraldehyde 3-phosphate dehydrogenase A TERM 329 330988 - 331018 + T 71 -2.1 -5.76633 | gap 1, overlap 330992 CTAAAAAATAATATT TATACTT-TCATTA GAAA TAATGATGGGTATA TTTTTTTATATATAG TERM 330 331025 - 331067 + T 87 -8.9 -4.62904 | gap 1, opp_overlap 331031 331033, overlap 331031 331066 331066 ATGGGTATATTTTTT TATATATAGCAGTATTAATT TTTA ATTTAATACTGCTAT-TATA TTTTTAAAAATATTT TERM 331 331031 - 331062 + T 87 -10.4 -4.07746 | opp_overlap 331031 331033, overlap 331025 ATATTTTTTTATATA TAGCAGTATTAATT TTTA ATTTAATACTGCTA TTATATTTTTAAAAA TERM 332 331062 - 331031 - T 81 -10.4 -2.87683 | opp_overlap 331025 331031, overlap 331033 ATATTTTTTTATATA TAGCAGTATTAATT TTTA ATTTAATACTGCTA TTATATTTTTAAAAA TERM 333 331060 - 331033 - T 72 -8.6 -2.98942 | opp_overlap 331031 331025, overlap 331031 ATTTTTTTATATATA GCAGTATTAATT TTTA ATTTAATACTGC TATTATATTTTTAAA TERM 334 331247 - 331269 + T 74 -9.4 -2.91276 | opp_overlap 331246 331245 331243 331256, overlap 331235 331246 TTCTAATAAAATATC CTTTATTAAT TTT ATTAATAAAG ATTTATAAAAAAAAA TERM 335 331507 - 331487 - T 89 -8.5 -4.74504 | ATGTGAATTGAAAAA TTTAGTTTA AAA TAAACTAAA AAAGTCTATTATTCT TERM 336 331514 - 331530 + T 81 -5.3 -5.5762 | TAAACTAAAAAAGTC TATTATT CTA AATAATA TTTTTTATATTTAAT fldA 332056 - 331541 - | flavodoxin phrB 332263 - 333714 + | deoxyribodipyrimidine photolyase TERM 337 333849 - 333865 + G 71 -8.1 -3.20302 | opp_overlap 333864, overlap 333840 333848 333845 GTGACTGCTTGTCAG GCTTTAT TAG ATAAAGC ATTATTTTATAATGC TERM 338 333880 - 333864 - g 80 -8.1 -4.08706 | opp_overlap 333849 333848 333845 GCTTTATTAGATAAA GCATTAT TTT ATAATGC CGATACTTTAATAGT ybgI 333711 - 334454 + | conserved metal-binding protein (YbgI) TERM 339 335136 - 335126 - g 74 -2.6 -5.60689 | CTATAGAAGAAAAAA TAAA TTT TTTA AAAGAATTAACTTAT sucA 334579 - 337308 + | 2-oxoglutarate dehydrogenase E1 component TERM 340 338330 - 338348 + G 80 -8.2 -4.07912 | overlap 338320 338331 338331 TAATGGGTGGCAATT TCACCATT ACT AATGGTGG TGTTTTTGGTTCCTT TERM 341 338331 - 338347 + G 78 -9.5 -3.03121 | overlap 338320 338330 338331 AATGGGTGGCAATTT CACCATT ACT AATGGTG GTGTTTTTGGTTCCT TERM 342 338331 - 338350 + G 72 -5 -4.93547 | overlap 338320 338330 338331 AATGGGTGGCAATTT CACCATTA CTAA TGGTGGTG TTTTTGGTTCCTTAA sucB 337324 - 338586 + | 2-oxoglutarate dehydrogenase E2 component gpmA 338685 - 339380 + | phosphoglycerate mutase pfkA 339564 - 340526 + | 6-phosphofructokinase TERM 343 340535 - 340557 + F 79 -9.8 -3.26405 | opp_overlap 340535 340534 340537, overlap 340534 340537 ATACTAATATAAAAT TAGTGCCGGT TTC ACCGGCGCTC TAGTTTTTAAATAAG TERM 344 340555 - 340537 - f 79 -10.2 -3.26743 | opp_overlap 340535 340534 340537, overlap 340535 340534 ACTAATATAAAATTA GTGCCGGT TTC ACCGGCGC TCTAGTTTTTAAATA TERM 345 340537 - 340555 + F 93 -12.4 -3.19102 | opp_overlap 340537 340535 340534, overlap 340535 340534 ACTAATATAAAATTA GTGCCGGT TTC ACCGGCGC TCTAGTTTTTAAATA glpF 340592 - 341383 + | glycerol uptake facilitator protein tpiA 342159 - 341392 - | triosephosphate isomerase himD 342542 - 342258 - | integration host factor beta-subunit rpsA 344314 - 342638 - | 30S ribosomal protein S1 aroA 346437 - 345154 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 346 345315 - 345294 - G 73 -8.9 -2.58861 | overlap 345293 GATGATCGTTATAAG TTTCAATAC TAGA GTATTGAAA AAAAATAGGTGGAGA serC 347589 - 346504 - | phosphoserine aminotransferase serS 348911 - 347628 - | seryl-tRNA synthetase TERM 347 347765 - 347792 + g 74 -2.8 -5.71712 | overlap 347767 CAGAACCATTTAATG TGTGTACAAAAA AATT TTTTTGTTCAGA TTTTTTTCTATAACG TERM 348 348164 - 348192 + g 88 -10.5 -3.40073 | opp_overlap 348161, overlap 348168 TGATAGGTAAATCTT TTTCGTCTATGAT TTG ATCATAGACTAAA TTAGTTAATGGAACT TERM 349 348168 - 348188 + g 87 -11.3 -2.61216 | opp_overlap 348161, overlap 348164 AGGTAAATCTTTTTC GTCTATGAT TTG ATCATAGAC TAAATTAGTTAATGG TERM 350 348713 - 348723 + g 74 -2.6 -5.67711 | TTAACAATTCATTTT TATT CTT AATA TTTTTGTTTTCTTTA TERM 351 348806 - 348823 + g 75 -7.1 -4.15543 | GTAAAGTTTTTCTTT TTTCTTC CATA GAAGAAA TTTTAGAAATATTTA TERM 352 348937 - 348947 + H 72 -4 -5.41143 | GCTCTTTTTGATTAT CAAT GAA ATTG TTTTTTTAAAAAATG trxB 349259 - 350218 + | thioredoxin reductase TERM 353 350255 - 350275 + F 88 -11.3 -2.89534 | opp_overlap 350255, overlap 350246 350257 ATTATATCATTTAAA TACTAGTCA AAA TGACTAGTA TCTGATATAATTAAT TERM 354 350275 - 350255 - f 93 -11.3 -3.70417 | opp_overlap 350255 350246 350257 ATTATATCATTTAAA TACTAGTCA AAA TGACTAGTA TCTGATATAATTAAT TERM 355 350257 - 350273 + F 75 -9.5 -2.99433 | opp_overlap 350255, overlap 350255 350246 TATATCATTTAAATA CTAGTCA AAA TGACTAG TATCTGATATAATTA infA 350325 - 350543 + | translation initiation factor IF-1 TERM 356 350702 - 350665 - f 82 -6.7 -5.10516 | opp_overlap 350670 AAAAACTAAATAAAA TAAATTTTTTCTTATTT TAAA AAATAAAAAAAATTTTA AAGAGAATTTATGCG TERM 357 351775 - 351757 - g 75 -3.3 -5.47218 | TTTGATGCAAAAAAA TTATTTT ATATA AAAATAA AAGAATGCAAACTTG aspS 350713 - 352473 + | aspartyl-tRNA synthetase znuB 353272 - 352484 - | high-affinity zinc uptake system membrane protein ZnuB TERM 358 352885 - 352895 + g 76 -4 -5.45652 | opp_overlap 352885 TGCTTATTGAAATAG TGAT TAA ATCA TTTTTTGTTACAGAT znuC 354046 - 353330 - | high-affinity zinc uptake system ATP-binding protein ZnuC TERM 359 354046 - 354060 + r 73 -2.2 -5.87688 | TTACGAATTCAAACA TAGTTT TAT AAATTA TTTTTTTTAAATTCT pykA 356586 - 355144 - | pyruvate kinase TERM 360 355345 - 355357 + g 74 -4.9 -5.14563 | AAGACTTGCTAAATT TAAAG TTT CTTTA TTTTTTGATAAAGCA zwf 356871 - 358346 + | glucose-6-phosphate 1-dehydrogenase htpX 358531 - 359409 + | heat shock protein HtpX TERM 361 359467 - 359416 - f 70 -7 -3.98661 | opp_overlap 359432 TATATGTAGTATAAA TCTATCTCTCTTAATAGAAGTATA GAAA TATATTTCTATTAAGAAAATTAAA AAATTGAAACATATA cspC 359758 - 359967 + | cold shock-like protein CspC TERM 362 361383 - 361372 - g 85 -3 -6.11644 | opp_overlap 361372 CTATTGAAAAAAAAA TAGA CGTA TCTA CTTTTTCTAGTAAAA yoaE 360270 - 361835 + | predicted inner membrane protein (YoaE) TERM 363 362253 - 362234 - g 72 -3.7 -5.20756 | GCAAAAAAAAAACAA GTATATT GGGCAA AATATAC AAGAAATAAAAACTC yeaZ 361865 - 362530 + | hypothetical protein TERM 364 362600 - 362560 - T 100 -12.2 -5.60689 | opp_overlap 362567 362569 TTATATAATAAAAAA CAATCAATGCTGAAATAT TAAAT ATACTTCAGTATTGATTG AACTAAATTTACAGT minE 362927 - 362676 - | cell division topological specificity factor MinE minD 363743 - 362931 - | septum site-determining protein MinD TERM 365 363446 - 363472 + g 80 -8.8 -3.96624 | overlap 363447 CTTTTTCAACTCCTA TTCGTGTTAAAG CGT CTTTATCACGAG TTTGTGATGCAGGTA TERM 366 363447 - 363471 + g 81 -10.1 -2.97653 | overlap 363446 TTTTTCAACTCCTAT TCGTGTTAAAG CGT CTTTATCACGA GTTTGTGATGCAGGT TERM 367 363495 - 363505 + g 91 -4 -5.9362 | opp_overlap 363495 TGCAGGTAGTATAAA CAAA TTA TTTG TTTTTTTATCTTTTA minC 364483 - 363770 - | cell division inhibitor MinC TERM 368 364905 - 364883 - H 100 -10.8 -6.3578 | opp_overlap 364889 364897, overlap 364892 364895 364897 ATTTTAAAAAAAAAA TATGAACAAT AAT ATTGTTCATA ACAATTTATTAATTT yjjT 364884 - 365726 + | 16S rRNA m(2)G 1207 methyltransferase TERM 369 365967 - 365980 + T 71 -2.5 -5.71712 | opp_overlap 365967 365978 CAAACAAAAAATGAA TTATT TTAA AATAA TTTTTTTGTATAAAA TERM 370 366131 - 366115 - T 70 -8.7 -2.52676 | overlap 366128 366129 GAGCGGTTTAAGGCA GCGGTCT TGA AAACCGC CGACGAGAAATCGTC ompA 367327 - 366278 - | outer membrane protein A precursor TERM 371 367425 - 367400 - R 77 -7.9 -4.32579 | opp_overlap 367391 367400, overlap 367386 367416 ATATTCTATAATAAA TATTATATAAT AAAT ATTATATAATA AATAATATATATAAT mviN 369004 - 367469 - | virulence factor MviN-like protein TERM 372 367691 - 367704 + g 74 -3.9 -5.33405 | GATGAATTCACTACG TTGTA AAGA TACAA TTTTTCTTTGATACA TERM 373 368958 - 368929 - G 72 -5.9 -4.45544 | overlap 368945 TGCTAGCAATTAAAA TATCTCGAACA AAACCTAA TATTCGAGATA TTAAAGTCATCAAAC pyrC 369278 - 370330 + | dihydroorotase flgN 370757 - 370350 - | flagella synthesis protein FlgN flgA 371510 - 370830 - | flagella basal-body P-ring formation protein FlgA precursor TERM 374 371168 - 371179 + g 73 -4.4 -5.10767 | ATTCTTTTATTCTTG TTCC TCGG GGAA TTTTTCTATTCGCTA TERM 375 371978 - 371960 - H 76 -6.2 -4.98522 | opp_overlap 371971, overlap 371971 AACTCTATATAAAAA TAAAAAAA CTA TTTTTTTA AAAAAAACTTCTCCT flgC 372203 - 372613 + | flagellar basal-body rod protein FlgC TERM 376 372726 - 372711 - g 78 -2.6 -5.75945 | AGCTGTCAAAAAAAA TGATAA TAAT TTACCA AATGACATCAACCCA flgD 372625 - 373335 + | basal-body rod modification protein FlgD TERM 377 373643 - 373628 - g 74 -6.1 -4.56607 | opp_overlap 373628, overlap 373623 TTAGGAATTATAAAA GACGG CTTTTT CCGTC TTGTAGACAGTCAAG flgE 373376 - 374602 + | flagellar hook protein FlgE TERM 378 375184 - 375174 - g 78 -2.6 -5.78622 | TTATCTGAAAAAAAA TAAT GAA ATTA ACAAAAAACATACTA flgF 374629 - 375387 + | flagellar basal-body rod protein FlgF flgG 375405 - 376187 + | flagellar basal-body rod protein FlgG flgH 376271 - 376987 + | flagellar L-ring protein precursor TERM 379 377033 - 377021 - f 71 -4.9 -5.01732 | opp_overlap 377011 377021 377019 AATCGTTTTAAAAAA CTATT TAA AATAG TATTTCTTATAAATT TERM 380 377088 - 377058 - f 75 -7.8 -3.79481 | TAAATTTAATTCAAA CTCATAAAGAAC GTTATTT ATTCTTTATGAG AAAAATTAAATATAT flgI 377168 - 378325 + | flagellar P-ring protein precursor flgJ 378325 - 378624 + | flagellar protein FlgJ TERM 381 379106 - 379090 - g 84 -3.8 -5.81412 | TTTAGCTAAAAAAAA TGTTTT TAATG AAAACA TACAGAAGAAATTAA TERM 382 379332 - 379318 - g 73 -8.6 -3.02459 | opp_overlap 379317 TATCGAACAACGAGA TCGTCT GGT AGACGA ATTAAATGGTTTAAT flgK 378725 - 380356 + | flagellar hook-associated protein 1 TERM 383 380384 - 380412 + T 100 -13.5 -5.38047 | opp_overlap 380384 380390, overlap 380390 CATACTTATAAAAAA TAAAAACTTACTT TTA AAGTAAGTTTTTA TTTTTTGTCTAAGTA TERM 384 380412 - 380384 - T 100 -13.5 -5.29782 | opp_overlap 380384 380390, overlap 380390 CATACTTATAAAAAA TAAAAACTTACTT TTA AAGTAAGTTTTTA TTTTTTGTCTAAGTA TERM 385 380406 - 380390 - T 100 -8.1 -5.8096 | opp_overlap 380390 380384, overlap 380384 TATAAAAAATAAAAA CTTACTT TTA AAGTAAG TTTTTATTTTTTGTC TERM 386 380390 - 380406 + T 100 -8.1 -5.8096 | opp_overlap 380384 380390, overlap 380384 TATAAAAAATAAAAA CTTACTT TTA AAGTAAG TTTTTATTTTTTGTC rne 383229 - 380521 - | ribonuclease E TERM 387 380716 - 380734 + g 85 -3.2 -6.02914 | opp_overlap 380716, overlap 380718 ATTTTTTCTATTACA TGTTCTTT TAT AAAGAAAA TTTTTTTTATCTAAA TERM 388 381401 - 381421 + g 72 -7.1 -3.93177 | opp_overlap 381398 381395 TTGTTTAAAGAACTA TATTTTTTT TTA AAAAAAATA TTATTCGTATTTTTT TERM 389 383523 - 383483 - H 72 -3.8 -5.5353 | gap 1, opp_overlap 383494 383500 TATATTAACAAAAAA TTTATT-TAATATATTTAT ATAA ATAATTATATTATAATAAA TAAAAATTAAAAAAA rluC 383564 - 384508 + | ribosomal large subunit pseudouridine synthase C TERM 390 384506 - 384520 + F 86 -5.8 -5.78622 | opp_overlap 384498 384504 384506, overlap 384498 TTAAATACTATAATA TAGTTT ATT AAACTA TTTTTTTTAACATAC rpmF 384554 - 384718 + | 50S ribosomal protein L32 TERM 391 384760 - 384740 - f 84 -8.4 -4.47456 | opp_overlap 384740, overlap 384759 ATATTTAATAAGAAA TGGTACTT GAAAA AAGTACCA TTTATAAAATATATA TERM 392 384740 - 384760 + F 78 -8.4 -3.91858 | opp_overlap 384740 384759 ATATTTAATAAGAAA TGGTACTT GAAAA AAGTACCA TTTATAAAATATATA TERM 393 384920 - 384876 - f 72 -6.2 -4.58663 | opp_overlap 384870 384886 ATTATTTTTTAAAAA TTTATTTTTATATATTTTTT AATAA AAAAAATATATTTAAATAAA ATTAAAAAGTAAAAT TERM 394 386727 - 386741 + G 79 -5 -5.53288 | opp_overlap 386727 GACAAAAAGAAGAAG TAGCAG ATG CTGTTA TTTTTTTAGCTTCAA fabG 386084 - 386818 + | 3-oxoacyl-[acyl-carrier protein] reductase TERM 395 386942 - 386926 - g 85 -3.1 -5.97575 | AACGTATAAAAAAAA TAATTTT TGA AAAACTA GATATAAAACAAGAA acpP 386895 - 387137 + | acyl carrier protein tmk 387208 - 387846 + | thymidylate kinase holB 387843 - 388823 + | DNA polymerase III delta' subunit TERM 396 388833 - 388807 - f 91 -9.8 -5.07567 | opp_overlap 388807 388814, overlap 388814 TTATATGGGAAAAAA TATTAAATTTTT CAT AAAAATTTAATA TTTATAAAAAAAGAG TERM 397 388807 - 388833 + F 83 -9.8 -3.85698 | opp_overlap 388807 388814, overlap 388814 TTATATGGGAAAAAA TATTAAATTTTT CAT AAAAATTTAATA TTTATAAAAAAAGAG ycfH 388857 - 389651 + | predicted metallodependent hydrolase (YcfH) ptsG 389748 - 391181 + | PTS system glucose-specific IIBC component hinT 391201 - 391545 + | purine nucleoside phosphoramidase (YcfF) TERM 398 391548 - 391574 + F 76 -5.4 -5.21683 | opp_overlap 391564, overlap 391546 391547 ATCTTTCTCCTAATT TTTTTATAGAAA AAA TTTTTATGAAAA TTTCTTTTTTTACAT TERM 399 391727 - 391704 - g 93 -5.5 -5.86332 | opp_overlap 391703 391704 CGAAGGTAAAAAAAA CAAATTTTA TTCTTT TAAAATTTG ATTCTGCTATAGAAA TERM 400 391982 - 391968 - g 87 -2.8 -6.28967 | overlap 391970 TAGAAATAAAAAAAA CACTAG ATA CCAGTA CTGCAATTTTTTTCT ycfM 391622 - 392131 + | predicted outer membrane lipoprotein (YcfM) ompF 393528 - 392380 - | OmpF-like porin asnS 395068 - 393668 - | asparaginyl-tRNA synthetase TERM 401 393928 - 393942 + g 74 -2.8 -5.73339 | TAGGCACTAATATAT CTATTG CTG CAACAG TTTTTTTATCGTTAT TERM 402 394448 - 394425 - G 71 -7.6 -3.55071 | GCATATGTTTCTAAA TTTAACTGTC CCGA AACAGTTAAA AAAGATTCTTTTCCA TERM 403 394471 - 394452 - G 73 -4.4 -5.18561 | opp_overlap 394452 GAAACAGTTAAAAAA GATTCTTT TCCA AAAAAATC TTTTTTAAAATCAAC pncB 396415 - 395216 - | nicotinate phosphoribosyltransferase TERM 404 395436 - 395451 + g 75 -3.4 -5.45726 | TTTTTATGAAATTTT TTATAT AAAG ATATAA TTTTTTTAAAATCTA TERM 405 396594 - 396577 - H 74 -5.7 -5.09685 | overlap 396593 TTCAAAAAAAAATAA TATCTTT AAAA AAAGATA GCACGTAAAATAAAA pyrD 396837 - 397700 + | dihydroorotate dehydrogenase TERM 406 398715 - 398703 - g 100 -6.3 -5.91981 | AAAAGCTAAAAAAAA TGCAT CAA ATGCA GGCGTTTTAAAAATA TERM 407 399090 - 399075 - g 72 -3.4 -5.35815 | TAGATTAAACAAAAA TTTTAA AAAA TTAAAA AAATGGATTAATTCG TERM 408 399384 - 399349 - g 76 -4.3 -5.35459 | opp_overlap 399349, overlap 399352 ACACAGTATAAAAAA TTATTTAATAGTAAT GATTTT ATCACTATTAAAGAA TATCATGCAAAATTT TERM 409 399894 - 399881 - g 71 -2.4 -5.52986 | opp_overlap 399867, overlap 399862 ATTGCATTAAAAAAA TGCA ATTACA TGCA AAAAAAATTACTAAC ycbY 397876 - 399981 + | 23S rRNA m2G2445 methyltransferase (YcbY) uup 400001 - 401791 + | ABC transporter ATP-binding protein Uup TERM 410 401780 - 401770 - T 72 -2.6 -5.77632 | overlap 401775 AAAATTAGAAAAAAA TATT ATA AATA CTAAAATATAGAATT yceA 402769 - 401795 - | hypothetical protein TERM 411 402059 - 402049 - G 71 -4.6 -4.86731 | opp_overlap 402049, overlap 402044 TCCCTTTAAACAAAA CGGG TAA CCCA TTTTTTCGAGCATCG valS 405693 - 402826 - | valyl-tRNA synthetase TERM 412 405615 - 405631 + g 75 -3.7 -5.40072 | opp_overlap 405614, overlap 405606 405617 ATTTTTCTAAATGAT TAGGTTT AAA AAACCCA TTTTTTTCCCAAAAA pepA 407269 - 405770 - | aminopeptidase A/I TERM 413 405839 - 405818 - G 72 -7.3 -3.91364 | opp_overlap 405817 AAATTGACATAATAA TTCAACAGG ACGT CCTGTTGCA CCTGATTTTTTTCCT TERM 414 407226 - 407250 + g 71 -4.4 -4.83169 | opp_overlap 407226 ACTACTATACAATCA GTTTTTTCTT TATCT AAGAAACAAC TTTTTATAAAAAAAT TERM 415 408002 - 407988 - g 71 -4.4 -4.99043 | opp_overlap 407988 TTTCCAGAAAGAAAA TTTTAT GAA ATAAAA TGTGCTTATGTTGGA argF 407529 - 408545 + | ornithine carbamoyltransferase chain F pyrB 408664 - 409596 + | aspartate carbamoyltransferase catalytic chain pyrI 409604 - 410068 + | aspartate carbamoyltransferase regulatory chain TERM 416 410375 - 410363 - g 84 -3.5 -5.81412 | CTGATTTAAAAAAAA TTAAT ATT ATTAA TGAAATTTATAAAAA tdcF 410113 - 410499 + | predicted L-PSP (mRNA) endoribonuclease (YhaR) TERM 417 410582 - 410546 - T 72 -5.9 -4.57063 | overlap 410548 410550 410551 TTAAAACAGAATAAA TACACTTAGTATGCCGC AAA GCGGCATAAAAAATACA AAATTAAACATTTCT deaD 412391 - 410586 - | ATP-dependent RNA helicase DeaD pnp 414895 - 412772 - | polyribonucleotide nucleotidyltransferase TERM 418 415033 - 415019 - R 90 -7.1 -5.51165 | opp_overlap 415019 AAAATCGTAAAAAAA GGGCT AATAA AGCCC TTTGAAAAATTTATT rpsO 415366 - 415097 - | 30S ribosomal protein S15 truB 416409 - 415471 - | tRNA pseudouridine 55 synthase rbfA 416809 - 416450 - | ribosome-binding factor A TERM 419 416584 - 416604 + g 100 -3.3 -6.60575 | opp_overlap 416581 416586 416587, overlap 416581 416587 TTCGGATATAACTAG AAGCTCTAT TTA ATAGAGTTA TTTTTTTTTTTACCT TERM 420 416587 - 416601 + g 91 -7.2 -5.2889 | opp_overlap 416581 416587 416586, overlap 416581 416584 GGATATAACTAGAAG CTCTAT TTA ATAGAG TTATTTTTTTTTTTA TERM 421 416737 - 416752 + g 73 -5.4 -4.69028 | GATCTTTAAGTGAAT GCTGTA TAAT TGCAGC TATTTTTTTTTGCAA infB 419449 - 416855 - | translation initiation factor IF-2 TERM 422 417321 - 417301 - G 72 -6.9 -4.2354 | opp_overlap 417317, overlap 417298 TAAATCCTAAAATAA TAGCATTAG ACG CTAGTGCTA AAGAAGCATCTGTTT TERM 423 417356 - 417366 + g 74 -2.6 -5.67529 | AATACCTCCAATTCC TAAT CCT ATTA TTTTTATTTTTACTT TERM 424 417786 - 417796 + g 70 -6.8 -4.03234 | AATACTGTAGCTATT GGAC CTC GTCC TTTATCTAAAAAAGA TERM 425 417954 - 417971 + g 71 -7.1 -3.86252 | ATATTCTCACCACCC CATTCTT CTGA AAGAATG TTATATTTCATCAAG nusA 420957 - 419467 - | transcription elongation factor NusA TERM 426 421162 - 421177 + r 87 -10.4 -4.23723 | opp_overlap 421162, overlap 421175 CATTGTAATAAAAAA CCCCGA AAAG TCGGGG TTTTAGGTGCTATTA TERM 427 421177 - 421162 - R 100 -10.4 -5.46657 | opp_overlap 421162 421175 CATTGTAATAAAAAA CCCCGA AAAG TCGGGG TTTTAGGTGCTATTA secG 421759 - 421430 - | protein-export membrane protein SecG TERM 428 421627 - 421643 + g 70 -5.3 -4.51891 | opp_overlap 421629, overlap 421624 TATTAGTTCCTATAC TATTAAA AAA TTTAATA TTATTTTTCGTATGT TERM 429 421825 - 421841 + r 71 -2.4 -5.8096 | overlap 421825 421825 421833 TTTACTTAAATATGC TTTTTT ATTAA AAAAAA TTTTTATTTTTTATA mrsA 423355 - 422021 - | MrsA protein TERM 430 422488 - 422457 - G 78 -6 -4.82901 | TGTGCGGGACAAAAA GGAATTCCAAGTTT TTTT AAACCTAGAATTAC ACCCATATTAGTCAT TERM 431 423459 - 423423 - R 80 -8.3 -4.3739 | opp_overlap 423423 423426, overlap 423407 TATTTTTTTAGAAAA TAAGATGAAGTTATA GTAATTT TATCACTTCATCTTA TTTTAAGATACATTA TERM 432 423423 - 423459 + r 83 -9 -4.15453 | opp_overlap 423407 423423, overlap 423426 TATTTTTTTAGAAAA TAAGATGAAGTTATAG TAATT TTATCACTTCATCTTA TTTTAAGATACATTA hflB 425410 - 423575 - | cell division protein FtsH TERM 433 424486 - 424476 - G 74 -6.8 -4.30844 | ACTTGACGATCAAAA CGAC CAG GTCG TAAGAGTGCAGGATC TERM 434 425317 - 425304 - G 80 -5.3 -5.24531 | opp_overlap 425304 ACTTCTGATAAAAAA GTTGA ATAG TCAAC TTTACGGTTATTTAC greA 426648 - 426169 - | transcription elongation factor GreA TERM 435 426494 - 426510 + g 78 -9.5 -2.9785 | overlap 426487 426493 426497 CTCTGTTCTTCACGA GCTGAAT GAT ATTCAGC ATTCTCTTTTAAATC TERM 436 426922 - 426909 - H 73 -2.5 -5.9667 | opp_overlap 426909 426914, overlap 426901 426914 AAAAATATAAAAAAA TTAAA TTTA TTTAA TAAATTACTTAAAAC yrbA 427171 - 427413 + | hypothetical protein TERM 437 427610 - 427596 - g 100 -8.6 -5.67529 | opp_overlap 427595 427596 AAGGAAAAATAAAAA TCGGAA ATA TTCCGA ATTTAACAGACATTA TERM 438 427596 - 427610 + G 70 -8.6 -2.72461 | opp_overlap 427596, overlap 427595 AAGGAAAAATAAAAA TCGGAA ATA TTCCGA ATTTAACAGACATTA murA 427475 - 428725 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase rplU 428864 - 429190 + | 50S ribosomal protein L21 rpmA 429195 - 429449 + | 50S ribosomal protein L27 TERM 439 429486 - 429472 - f 89 -10 -4.63044 | opp_overlap 429468 429472 ATTTATATAAACAAA CCCCTT TTC AAGGGG TTCTATCTTTTTTAT TERM 440 429472 - 429486 + F 85 -10 -3.95724 | opp_overlap 429472, overlap 429468 ATTTATATAAACAAA CCCCTT TTC AAGGGG TTCTATCTTTTTTAT TERM 441 430228 - 430218 - g 71 -2.6 -5.54264 | AAATATTCAAAAAAA TAAA AAA TTTA TCATAGCAGATATTC TERM 442 430275 - 430289 + G 74 -5 -5.03747 | GGCATCTTATGGTGC CGGATT AGG AATTCG TTTTTTAAAGCATTT yhbZ 429601 - 430605 + | hypothetical 43.3 kDa GTP-binding protein TERM 443 430638 - 430610 - T 88 -6.1 -6.04324 | opp_overlap 430610 TGAAAAAATAAAAAA GAACTCGGTTC AGTAAGA AAACCAAGTTC TTTTTAATCAAAACT rpsI 431065 - 430673 - | 30S ribosomal protein S9 rplM 431514 - 431086 - | 50S ribosomal protein L13 TERM 444 432446 - 432432 - g 86 -7.2 -5.15634 | opp_overlap 432431 GATTTTATTAAAAAA TTTCCA GAA TGGAAA ATTAAATATACTAAG pheA 431766 - 432923 + | chorismate mutase TERM 445 433724 - 433706 - g 82 -4.6 -5.65177 | overlap 433709 ATATTGATAAAAAAA TGATGAAT GAA ATTCAGCA AATACAAGTTATATC ffh 433105 - 434460 + | signal recognition particle protein rpsP 434570 - 434809 + | 30S ribosomal protein S16 TERM 446 434930 - 434897 - g 73 -7.7 -3.87075 | opp_overlap 434897 ATTAGGTTGGATAAA TATTTTTTCTTTCAC AGAA GAAAAAGAAAAAATA TTCAATTATCTTCCA rimM 434811 - 435341 + | 16S rRNA processing protein RimM TERM 447 435382 - 435368 - g 86 -2.2 -6.28631 | TAAATGAAAAAAAAA TATAAT GAA ACTATA ATATGCTTTAATATT TERM 448 435995 - 436005 + G 74 -8.2 -3.54543 | opp_overlap 435994 AACCACAATGAAATT CGCC TTT GGCG TTTAAAACAGTCACT trmD 435356 - 436069 + | tRNA (guanine-N1)-methyltransferase rplS 436168 - 436515 + | 50S ribosomal protein L19 TERM 449 436522 - 436554 + T 72 -4.3 -5.35459 | gap 1, opp_overlap 436524, overlap 436524 TTAAATTAATTTTAA TA-TGCAGTCATGA CATAAT TCTTGACTGCATTA TTTTTTATGGTATAT TERM 450 436524 - 436551 + T 89 -8.5 -4.74611 | opp_overlap 436524, overlap 436522 AAATTAATTTTAATA TGCAGTCATGA CATAAT TCTTGACTGCA TTATTTTTTATGGTA TERM 451 436551 - 436524 - T 72 -8.5 -3.1158 | opp_overlap 436522 436524 AAATTAATTTTAATA TGCAGTCATGA CATAAT TCTTGACTGCA TTATTTTTTATGGTA tldD 438050 - 436599 - | TldD protein TERM 452 436650 - 436665 + g 70 -6.2 -4.16146 | CATAGATGGTTGACC TATTCC AACT GGAATA TTTTGACCGTCTTTT TERM 453 438129 - 438113 - H 81 -3.8 -6.14618 | opp_overlap 438124 438124 438125, overlap 438124 GATAAAACAAAAAAA GAAAAA AATAA TTTTTC TAAAAAAATGTTATA aroD 438208 - 438660 + | 3-dehydroquinate dehydratase TERM 454 438757 - 438725 - T 80 -10.3 -2.54687 | opp_overlap 438707 438725 438727 438742, overlap 438707 438724 438743 TTAATTAGTATTAAT TCTTTTTAAAAAATA TAT TATTTTTTAAAAAAA TAGTTAAATTTTTTT fis 439148 - 438852 - | factor-for-inversion stimulation protein rluD 440255 - 439317 - | ribosomal large subunit pseudouridine synthase D TERM 455 439357 - 439377 + g 78 -2.5 -5.86061 | overlap 439358 ATATCTTGAGGAAGT GGTACTGTC CAT GACATTACA TTTTTTTTAATAGGA yfiO 440420 - 441160 + | hypothetical 27.8 kDa lipoprotein TERM 456 441162 - 441138 - f 76 -6.7 -4.54753 | opp_overlap 441138, overlap 441135 AAATATCAAAAATAA TTTTATTAAAT AAA ATTCAATAAAA AAACTTGATTATTAT TERM 457 441695 - 441681 - g 74 -2.8 -5.63374 | overlap 441693 TTAACATCAAAAAAA TGGTTT AAC ATACCA CAAAATAAATTATGG TERM 458 442021 - 442003 - g 71 -4 -5.0916 | TCTCCAAGACAAAAA TTATTTCT TTA AAAAATAA ATCCATAGATACAGG TERM 459 442657 - 442647 - g 71 -2.6 -5.54885 | opp_overlap 442647, overlap 442649 AATATCAATAAAAAA TTTT ATA AAAA TTATAACAACAATAT TERM 460 443688 - 443676 - g 74 -4.9 -5.15167 | opp_overlap 443676 GATTATGAACAAAAA TCATT AAG AATGA TAGTTGATCAATTGA TERM 461 443770 - 443746 - g 71 -8.7 -2.94561 | opp_overlap 443750 443753, overlap 443741 443750 443753 TCTTAATAAATATTA TCAATAATCGT TTT ACGATTATTGT AGGTGTAACAAGAAA TERM 462 443766 - 443750 - g 71 -8.1 -3.32294 | opp_overlap 443750 443753, overlap 443741 443746 443753 AATAAATATTATCAA TAATCGT TTT ACGATTA TTGTAGGTGTAACAA TERM 463 443750 - 443766 + G 73 -8.1 -3.39327 | opp_overlap 443741 443750 443746 443753, overlap 443753 AATAAATATTATCAA TAATCGT TTT ACGATTA TTGTAGGTGTAACAA alaS 441324 - 443960 + | alanyl-tRNA synthetase csrA 444155 - 444328 + | carbon storage regulator TERM 464 444639 - 444623 - f 70 -8.7 -2.69468 | overlap 444635 CAGTTGGATAGAGTA CTCGGCT ACG AACCGAG CGGTCGGAGGTTCGA TERM 465 445207 - 445196 - g 80 -5.8 -5.04987 | opp_overlap 445196 AATAGGTTTAAAAAA TCGC TACG GCGA TTTGATAAATACTAT TERM 466 446202 - 446178 - g 70 -5.1 -4.69435 | GGAATAAAAAAAACA GGTCTCTATTT GGC AAATAAATACC ACGAAAAATTTATTA gshA 444786 - 446342 + | glutamate-cysteine ligase metK 447625 - 446489 - | S-adenosylmethionine synthetase TERM 467 446515 - 446533 + g 70 -6 -4.3739 | opp_overlap 446517, overlap 446518 CATTTACCTTGTCAA GATTTTCC CAT GGAAATTC TTTTCTACCAAAATG TERM 468 446518 - 446530 + g 72 -6.3 -4.30995 | opp_overlap 446517, overlap 446515 TTACCTTGTCAAGAT TTTCC CAT GGAAA TTCTTTTCTACCAAA TERM 469 447843 - 447868 + H 76 -5 -5.42198 | opp_overlap 447833 447831 447861, overlap 447835 AACGATATGTTTTTA TTTTTTAATA ACAACA TATTAAAAAA TTTTGTTTTTTAAAA endA 447860 - 448612 + | endonuclease I TERM 470 448971 - 448938 - gT 70 -8.5 -2.69603 | overlap 448935 AAAACCATTACACCA TTGTTTTTTGAAAAT GATC ATTTTCAAAAAAAAA GAATAAATTTTTCTA rsmE 448584 - 449345 + | 16S rRNA m3U1498 methyltransferase (YggJ) rpiA 450090 - 449419 - | ribose-5-phosphate isomerase A TERM 471 449628 - 449642 + g 71 -4.2 -5.06735 | CATTTTTACGATATT TTGGCG TTC CACCAA TTTTTATCATTTCTC TERM 472 449702 - 449724 + g 84 -3.4 -5.75822 | opp_overlap 449707, overlap 449705 449707 ATTTCAATTGGTAGA GGAAATGTTC CAA GAACATCTAC TTTTTTTGATTTGTC TERM 473 450050 - 450063 + g 100 -3.7 -6.50278 | TCAATATAATCTAGT GCCGC CCAA GCTGC TTTTTTTTTTAGTTT TERM 474 450660 - 450645 - H 78 -3.4 -5.9218 | opp_overlap 450645 450650, overlap 450650 TACAGAAGAAAAAAA TATATT TTAT AATATA TAAATTGAATAATCA TERM 475 451220 - 451209 - g 90 -5.8 -5.59502 | opp_overlap 451212 451213, overlap 451210 451212 451214 GAAAAAATGAAAAAA GGAG ACTT CTCC GAAGGAGAAGCATGT TERM 476 451230 - 451214 - g 90 -10.9 -3.27687 | opp_overlap 451213 451212, overlap 451209 451212 451210 AATGAAAAAAGGAGA CTTCTCC GAA GGAGAAG CATGTTTGCGCGCAA glnS 450717 - 452432 + | glutaminyl-tRNA synthetase TERM 477 453482 - 453460 - g 74 -2 -5.64274 | opp_overlap 453466, overlap 453462 TTATGCAGAAAAAAA CTTTAACAAT ACT ATTGTTATTG GAATTATTGGAAAAT TERM 478 453632 - 453616 - g 73 -3.1 -5.54907 | GGTAGAAAATAAAAA TTTTCAA ATC TTAAAAA ATCTTAATGGCATCT TERM 479 454055 - 454034 - g 76 -8.9 -3.05539 | overlap 454026 454033 TATGAAGTAAATAAT CTTCTATTT AAAA AAATAGAAG CCGCGGGATTGCAGG pyrG 452606 - 454243 + | CTP synthetase eno 454273 - 455577 + | enolase nlpD 456738 - 455734 - | lipoprotein NlpD precursor TERM 480 456176 - 456197 + g 70 -3.1 -5.18995 | overlap 456165 456163 TTTATTTTTTTTATG CAAAAAAAA CATA TTTTTTTAG TTTTTATATTATCTT TERM 481 456528 - 456547 + g 86 -2.3 -6.18768 | opp_overlap 456528, overlap 456528 456528 456536 456538 TATTGCCAATAATAA TTTTTTT ATTTAA AAAAAAA TTTTTTTTATATTTT TERM 482 456707 - 456697 - G 78 -2.6 -5.81622 | opp_overlap 456697 AGAAAACGAAAAAAA TATT AAA AATA ATAATTTAAATAAAA TERM 483 456782 - 456772 - R 74 -5.4 -4.91852 | opp_overlap 456772 TTCATTAAAAATAAA TGTC TTA GACA ATATTTTTTTATATA ispF 457313 - 456828 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer (YgbB) ygbP 458042 - 457329 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 484 458090 - 458071 - R 81 -5.2 -5.6473 | opp_overlap 458071 458083, overlap 458063 458062 458081 ATAAGACTAAAAAAA TTTTTTTA AATT TAAAAAAA AAATTTTCTTTTATT ftsB 458341 - 458126 - | essential cell division protein FtsB (YgbQ) cysC 459019 - 458399 - | adenylylsulfate kinase cysN 460441 - 459020 - | sulfate adenylate transferase subunit 1 TERM 485 459099 - 459109 + g 76 -4 -5.47159 | overlap 459103 AAATCATAAAAATCT GATT CAA AATC TTTTTGTTTATTAGA cysD 461368 - 460460 - | sulfate adenylyltransferase subunit 2 cysG 462799 - 461378 - | ferrochelatase cysH 463871 - 463137 - | phosphoadenosine phosphosulfate reductase TERM 486 463652 - 463664 + g 93 -3.3 -6.25242 | opp_overlap 463652 TATCAATTAATACAA CAGGA ATA TCCGG TTTTTTTTTGATTAT cysI 465596 - 463887 - | sulfite reductase (NADPH) hemoprotein beta-component TERM 487 464977 - 464987 + g 70 -5.4 -4.59846 | GGTAAATATGTTTTT CCTA ATA TAGG TTCTTTTTCTGTCGT TERM 488 465126 - 465138 + g 72 -6.3 -4.35044 | TTCCATAGGATTTGA TGTAC AAA GTACA TTTCTATTTACATCA cysJ 467401 - 465596 - | sulfite reductase (NADPH) flavoprotein alpha-component mutS 470000 - 467592 - | DNA mismatch repair protein TERM 489 467756 - 467777 + g 70 -3.1 -5.25772 | opp_overlap 467756 467746, overlap 467744 467743 TAATAGCAGAAAAAT GAAAATTTT TTAC AAATTTTTC TTTTTCTTCTAATTT TERM 490 468602 - 468620 + g 100 -3.2 -6.82322 | opp_overlap 468595 468606, overlap 468595 468606 TATTAAATTTTATCT TAAATGAT TCA ATCATTAA TTTTTTTTTTTCTTT TERM 491 469976 - 469986 + g 95 -2.6 -6.63964 | overlap 469958 TATGATTGTTCATAC TATT CTT AATA TTTTTTTTTTTCATA dsbA 470157 - 470795 + | thiol:disulfide interchange protein DsbA precursor TERM 492 471168 - 471158 - g 95 -4 -6.12328 | AGAATATAAAAAAAA TAGA TCA TCTA TGCCTGATTTATTGG TERM 493 471396 - 471386 - g 82 -2.6 -5.94713 | opp_overlap 471386, overlap 471389 ATTCCATAAAAAAAA TAAT TGC ATTA TTACATCAGAAATAA TERM 494 471416 - 471389 - g 74 -5 -5.03409 | opp_overlap 471386, overlap 471386 CCATAAAAAAAATAA TTGCATTATTAC ATCA GAAATAATACAA GAAAAATATGGTATA TERM 495 471610 - 471585 - g 71 -2.7 -5.43553 | overlap 471580 471587 ATTGAAAAAATAAAA TCTTTACCATT AAGA AATGCTAAAAA TATTTCTATTCAACT polA 470916 - 471776 + | DNA polymerase I yihA 472456 - 471839 - | hypothetical GTP-binding protein TERM 496 473130 - 473145 + G 86 -6.2 -5.24551 | opp_overlap 473132 CCTGATTGGGTAGTA GATCAA GTTT TTGATC TTTTTGTTAATTTGA typA 472707 - 474530 + | GTP-binding protein BipA TERM 497 474615 - 474587 - T 74 -9.2 -2.71144 | opp_overlap 474581 474592, overlap 474589 474592 TATCTTTTTCAATTA TATAATTCTATT TATTC AATAGAATTATA TAAAAGTGTTCCTAA gmk 475276 - 474653 - | guanylate kinase ygfZ 476335 - 475376 - | folate-binding protein (YgfZ) TERM 498 475660 - 475682 + g 76 -8.6 -3.56216 | CATAATAACATCCTT TTTTAAAGCT AAT AGCTTTAAGA TTATGTAAATTAATT prfB 476554 - 477603 + | peptide chain release factor 2 TERM 499 478258 - 478277 + G 88 -7.8 -4.81852 | CTACAAAATATTCCT GGAGGAGC TAAT GCTCGTCC TTTTATTACTTATCA TERM 500 478953 - 478927 - g 74 -6.8 -4.26398 | overlap 478925 478928 GAAGATCAAAAAACA CGATTTTTAAAT CAA ATTCAAAAATCA AATAAGGAAGATAAT TERM 501 478952 - 478928 - g 70 -8.1 -3.14212 | overlap 478927 478925 AAGATCAAAAAACAC GATTTTTAAAT CAA ATTCAAAAATC AAATAAGGAAGATAA lysS 477613 - 479133 + | lysyl-tRNA synthetase lysA 479199 - 480446 + | diaminopimelate decarboxylase TERM 502 480883 - 480873 - g 95 -2.6 -6.56554 | opp_overlap 480873, overlap 480878 AATATAAAAAAAAAA TATT AGA AATA TCTGATTTCATCACT TERM 503 481116 - 481132 + G 75 -3.7 -5.43621 | overlap 481118 TATACGAATTTTTTT TAGAAGG GAT TCTTCTG TTTTTTATAATTTAT lgt 480512 - 481357 + | prolipoprotein diacylglyceryl transferase TERM 504 481723 - 481712 - g 77 -3 -5.68438 | overlap 481716 TGATCAAATAAAAAA TGTA TTAA TACA ATTAAAAAAAAATCC thyA 481371 - 482165 + | thymidylate synthase TERM 505 482461 - 482442 - g 86 -2.2 -6.12458 | GAAAAAAATAAAAAA TAATAACC CAAA AGTCATTA TTGCTGTAGGGGGTT TERM 506 482661 - 482643 - g 71 -7.6 -3.59063 | overlap 482641 AGAAAAATTTAAATA TTTTTTAG CAC CTAAAAAA AAAGGATACACGGCA miaB 482233 - 483552 + | isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) TERM 507 483697 - 483685 - f 85 -3.5 -6.38039 | TATGTAAAAAAAAAA TATAA ACA TTATA ACAATCCGTATTGTA TERM 508 483744 - 483734 - g 71 -2.6 -5.37593 | opp_overlap 483734 TGGGAAATTAAAAAA TTAA ATT TTAA TTATAGAAAAAAAAA TERM 509 483782 - 483764 - g 71 -2.4 -5.48106 | opp_overlap 483765 483768, overlap 483765 483768 AGAAAAAAAAATAAA CCAACAAA TAT TTTGTCGT TTCCTTTTAATAAAT ybeY 483707 - 484042 + | hypothetical protein ybeX 484123 - 484998 + | hypothetical protein TERM 510 485174 - 485164 - g 84 -4 -5.75342 | overlap 485171 GTTTTGGAAAAAAAA CAAA ACT TTTG AAGTCAAAGAAGATC TERM 511 485469 - 485432 - g 91 -7.9 -5.28755 | AAATACATGAAAAAA CAACTCCAATCATTA GGTTTTAG TTATGATTGGAGTCG AGAAATAACTACATG TERM 512 487465 - 487481 + G 74 -6.7 -4.37092 | opp_overlap 487454 487478 CAACGAAAAATGGCC TATCTTT CAA AAAGATA TTTTATCAAAAAAAT leuS 485102 - 487681 + | leucyl-tRNA synthetase TERM 513 487758 - 487776 + G 100 -9 -5.44837 | opp_overlap 487757 AACTAAAAAAAAGTT TAATGCAA AAA TTGCATTA TTTTTATATTTTTTT TERM 514 487838 - 487822 - g 74 -2.3 -5.67063 | opp_overlap 487822, overlap 487799 TTTATTAGAAAAAAA TCAAGAT ATG ATATTGA ATTTTGCATATAAAA TERM 515 488439 - 488419 - g 71 -7.1 -3.88498 | opp_overlap 488421 CTTTTATATATTAAA TATTTTTTT TAA AAAAAAATA TAATCCTATTATTTT TERM 516 488520 - 488566 + G 74 -4 -5.24129 | opp_overlap 488529, overlap 488521 AAAAAAAAATAAGTA TTTATGTAATGTTAGAAAAATA TAA TATTTTTGTAACAAGACGTAAG TTTTTTATCAAGGCA holA 487721 - 488716 + | DNA polymerase III delta subunit TERM 517 488852 - 488842 - g 82 -2.6 -5.93809 | TTTCTATAAAAAAAA TAAT ACT ATTA CCCAATAACTATCCT nadD 488739 - 489383 + | nicotinate-mononucleotide adenylyltransferase (YbeN) TERM 518 489430 - 489416 - f 88 -5.8 -6.02914 | opp_overlap 489391 489416 CTCACATAAAAAAAA TCTATT TAA AATAGA TTCGATAAAAAAATG sirA 489443 - 489673 + | sulfur transfer protein (YhhP) TERM 519 489813 - 489791 - T 95 -10.8 -5.24989 | opp_overlap 489790 489789 GTATACATTAAAAAA TTCTATTACT ATT AGTAATAGAA AATATTTTATATATT asd 490935 - 489820 - | aspartate-semialdehyde dehydrogenase yhgN 491231 - 491821 + | hypothetical protein TERM 520 491864 - 491842 - f 79 -9.3 -3.62775 | ATTATTTTTTAAGAA CCTGTTATT AATGG AATAACAGG TTAAAATAATCGACT pgk 491935 - 493107 + | phosphoglycerate kinase fba 493123 - 494199 + | fructose-bisphosphate aldolase yggB 494335 - 495180 + | mechanosensitive channel MscS TERM 521 495336 - 495311 - g 71 -4.1 -5.11063 | opp_overlap 495305, overlap 495305 495312 ATTATTGAAGAAAAA CCTTTTTCTAA TATT TTTGAAAAAGA GATATTTATTTATGA TERM 522 495558 - 495548 - g 74 -2.6 -5.60689 | TTAGATAATAAAAAA TTTT TTG AAAA TTGCAGTAAAAAAAA TERM 523 495616 - 495632 + G 70 -5.3 -4.58424 | opp_overlap 495629 ATTTTTAATGGCCAG TATATTT AAA AAATATA TTTTATATCGTCCTG TERM 524 496118 - 496099 - g 77 -2.2 -5.81032 | TAAGTCTAAAAAAAA TAAAGTAA TCAA TTGCTTTA AAAAAAATAAAAATA TERM 525 496928 - 496917 - g 70 -3 -5.25799 | AAAATAACACAAAAA TAGA AAAA TCTA TTCAAATAATTCAAA TERM 526 496982 - 496962 - g 91 -9.9 -4.16301 | opp_overlap 496961 496959 496962 AATGGATAGAAATAA TTGATGATA GTT TATCATCAA ATTATTTAAAAAAAA TERM 527 496962 - 496982 + G 80 -9.9 -2.94232 | opp_overlap 496962, overlap 496961 496959 AATGGATAGAAATAA TTGATGATA GTT TATCATCAA ATTATTTAAAAAAAA TERM 528 497471 - 497450 - g 89 -7.5 -5.0133 | overlap 497463 TATCTGTGCAAAAAA CATAAAAAA CAAT TTTTTTATG AAACAAAAAATATAG TERM 529 497781 - 497767 - g 70 -2.2 -5.42164 | CATAAATAATAAAAA TATAAC AAA ATTATA CCAACACTACCTTCT TERM 530 498306 - 498284 - g 71 -2.8 -5.38839 | TATACAAAAATAAAA GCATATAAAA AAT TATTATATAC CTGGAAAGGAGATAA recC 495239 - 498463 + | exodeoxyribonuclease V 125 kDa polypeptide TERM 531 499170 - 499150 - g 72 -7.1 -3.98016 | opp_overlap 499162, overlap 499148 ATCATGAAGAAAATA TAAAAAAAA TAA TTTTTTTTA AAGAAATGTGGTTGA TERM 532 499443 - 499431 - g 74 -4.9 -5.10526 | opp_overlap 499435 ATATTAAAAAAGAAA TTTTC ATT GAAAA ATGTCATTATAATCT recB 498468 - 501992 + | exodeoxyribonuclease V 135 kDa polypeptide TERM 533 503011 - 502988 - g 83 -7.6 -4.68994 | overlap 502989 ATTAGTATTGAAAAA CTTACACAAT ATAA ATTGTGTAAA AAAATAAATAAAAAA TERM 534 503010 - 502989 - g 79 -8.9 -3.40674 | overlap 502988 TTAGTATTGAAAAAC TTACACAAT ATAA ATTGTGTAA AAAAATAAATAAAAA recD 501998 - 503806 + | exodeoxyribonuclease V 67 kDa polypeptide argA 505173 - 503845 - | N-acetylglutamate synthase TERM 535 505184 - 505200 + H 70 -8.1 -3.17888 | overlap 505182 TTCATATCAATCCTC TTGCATT TTT AATGCAA TATATATATTATTTT mltA 505540 - 506619 + | membrane-bound lytic murein transglycosylase A precursor TERM 536 506671 - 506659 - g 74 -2.7 -5.65678 | AGAAAATATAAAAAA TGAAT ATA ATCCA ATCAGGAATTACAGC TERM 537 506832 - 506812 - g 73 -5.5 -4.67556 | overlap 506814 AGAACATCTTAAAAA TATATGTTC CTG GAACATATG AAATACCAACTATTG TERM 538 506830 - 506814 - g 78 -8.1 -3.9442 | overlap 506812 AACATCTTAAAAATA TATGTTC CTG GAACATA TGAAATACCAACTAT ribH 506658 - 507140 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 539 507717 - 507706 - g 76 -4.4 -5.252 | TATTTTTATAAAAAA CGTA AATA TACG AAATTATTTGATTAA thiL 507170 - 508141 + | thiamin-monophosphate kinase TERM 540 508123 - 508143 + F 71 -8.5 -2.92668 | opp_overlap 508122 508123, overlap 508122 CTTTAAAAAAAAAGG TTTTAATCA CTT TGATTAAAA GTTTATAAAAAATTT TERM 541 508143 - 508123 - f 72 -8.5 -3.12685 | opp_overlap 508123 508122, overlap 508122 CTTTAAAAAAAAAGG TTTTAATCA CTT TGATTAAAA GTTTATAAAAAATTT ribD1 508197 - 508622 + | riboflavin deaminase ribD2 508665 - 509309 + | riboflavin reductase nusB 509324 - 509755 + | transcription antitermination protein NusB dxs 511636 - 509810 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 542 510786 - 510802 + g 70 -3 -5.26875 | GGATTTAGCTCAGCA GGAAGA TAACC TTTTCC TTTTTTAGTTACAAG ispA 512542 - 511694 - | geranyltranstransferase yajR 513766 - 512594 - | putative molybdenum cofactor-binding oxidoreductase (YagR) TERM 543 513158 - 513142 - G 86 -4.5 -5.91981 | opp_overlap 513142 AAAATCTAAAAAAAA CTTTATT TAA AACAAAG TTTAATACTTTTTTA TERM 544 513606 - 513560 - G 81 -9.8 -3.05384 | opp_overlap 513560 513574, overlap 513564 513572 513574 TTTCTTTCGATTGAA TTTATCAGATAATATTCCAAAT GGA ATTTGAAAAATTACCTGAGAAA TTCCATAAATACCCA TERM 545 513602 - 513564 - G 81 -10.6 -2.54896 | opp_overlap 513560 513574, overlap 513560 513572 513574 TTTCGATTGAATTTA TCAGATAATATTCCAAAT GGA ATTTGAAAAATTACCTGA GAAATTCCATAAATA TERM 546 514156 - 514141 - g 74 -9 -2.94708 | overlap 514126 514140 GACCTGCTAAACAAG CCAGCA AAAT TGCTGG AATACCTAAACCAGT yccK 513840 - 514184 + | sulfur transfer protein (YccK) cyoE 515062 - 514205 - | protoheme IX farnesyltransferase TERM 547 514559 - 514536 - G 70 -3.2 -5.33331 | overlap 514539 GAAATAGAATAAAAA TGAGACATTT GCCA AAATATCACA ATAACAAATAACAAT cyoD 515407 - 515090 - | cytochrome O ubiquinol oxidase subunit IV cyoC 516024 - 515407 - | cytochrome O ubiquinol oxidase subunit III cyoB 518009 - 516021 - | cytochrome O ubiquinol oxidase subunit I TERM 548 516057 - 516067 + g 91 -4 -6.08563 | opp_overlap 516057 AATATTTTTCCAATA TTGA TGC TCAA TTTTTTTTATCTCTT TERM 549 517109 - 517099 - G 75 -5.4 -4.82901 | CGTTTTTTAGAAAAA GTAG CCA CTAC CTCTGAAAATACACC cyoA 518904 - 518014 - | cytochrome O ubiquinol oxidase subunit II TERM 550 518104 - 518116 + g 84 -3.5 -5.77853 | overlap 518098 ATATTGGTTTTTAAT TTTAT TAA ATAAA TTTTTTTTAACACTT TERM 551 519145 - 519166 + H 77 -2.5 -6.13503 | gap 1, opp_overlap 519136 519134 519145 519150, overlap 519150 ATAATACTATCAAAA TAGCATAAAA AAA TTTTAT-CTA TTTTTTTTATTAATA bolA 519203 - 519517 + | BolA protein TERM 552 519692 - 519680 - g 72 -3.4 -5.21683 | ATGGAAAAAAATAAA GATG CAGGT CATC GTGTTACAATTAAGA TERM 553 519975 - 519959 - g 100 -6.7 -6.35605 | opp_overlap 519959 519962 GAAGATAAAAAAAAA GAATATT TTG AATATTC TGTAATTTACGAACT TERM 554 520279 - 520289 + G 78 -2.6 -5.78622 | opp_overlap 520270 520287, overlap 520270 AATCAATCATTTTGT TAAT GAC ATTA TTTTTTTTAAAATAA TERM 555 520648 - 520633 - g 72 -4.8 -4.93661 | overlap 520641 ATATCAAGAAGAAAA TTCTAA TATT TTAGAA AAAAAATACCACATG TERM 556 520931 - 520916 - g 72 -4.8 -4.88222 | ATTAAAATTGAAAAA CAAAAT TGGA ATTTTG AACGCTTTTTAAATT tig 519653 - 520981 + | trigger factor clpP 521116 - 521742 + | ATP-dependent Clp protease proteolytic subunit TERM 557 522966 - 522953 - g 70 -2.3 -5.38958 | AGCTATAAATAAAAA CACTG GAGC CAGAG GATTACGATCTATTA clpX 521841 - 523130 + | ATP-dependent protease ATP-binding subunit TERM 558 524391 - 524366 - g 75 -3.3 -5.43329 | AAAAATAAAATAAAA GGTCCTATT TTATGTTT AATAGGGCC ACCTGGTGTAGGAAA TERM 559 525317 - 525305 - g 77 -6.3 -4.72986 | opp_overlap 525305 GATTTTCATGAAAAA CATGA CAT TCATG TTCATGTTCCTGAAG lon 523322 - 525655 + | ATP-dependent protease LA TERM 560 525720 - 525693 - f 95 -4.8 -6.28967 | opp_overlap 525694 525696, overlap 525694 TATAAATAAAAAAAA CTTGGCTGACAA AGAA TCGTCAGCCTAT ATATTTTAATATAAT TERM 561 525719 - 525694 - f 80 -8.3 -4.3372 | opp_overlap 525694 525696, overlap 525693 ATAAATAAAAAAAAC TTGGCTGACAA AGAA TCGTCAGCCTA TATATTTTAATATAA TERM 562 525696 - 525717 + F 73 -8.7 -3.29568 | opp_overlap 525694 525693, overlap 525694 AAATAAAAAAAACTT GGCTGACAA AGAA TCGTCAGCC TATATATTTTAATAT TERM 563 526104 - 526090 - g 71 -7.2 -3.86031 | TCAATTAATTAATAA TGTTCT TTT AGAACA ATATGCAAAAAATAT TERM 564 526959 - 526940 - g 91 -2.2 -6.37666 | ATAAAACAAAAAAAA TCATTAGA TTTA TATAATGA ACTAAAAAATAAAAT TERM 565 527087 - 527069 - g 70 -3.2 -5.24129 | TGGTTTGATAAAAAA TCAATACC TAA AGTATTAA ATATTCCTATATTAA TERM 566 527251 - 527229 - g 85 -7.2 -4.94811 | overlap 527225 TTAAAAATAAAGAAA TTCAACATTT CGA AAATGTTAAA AAAAATATTATAAAA ppiD 525797 - 527668 + | peptidyl-prolyl cis-trans isomerase D TERM 567 528580 - 528540 - f 90 -7.3 -5.52986 | opp_overlap 528578, overlap 528562 528578 ATGTTATCAAAAAAA TTATTTTTAGATCAAAA AAAAACA TTTTTATCTAAAAATAA ACACTTTATTGTTAA TERM 568 528579 - 528562 - f 77 -2.1 -6.19443 | opp_overlap 528578, overlap 528540 528578 TAGATCAAAAAAAAA CATTTTT ATCT AAAAATA AACACTTTATTGTTA mdl 528636 - 530405 + | multidrug resistance-like ATP-binding protein Mdl TERM 569 531807 - 531836 + GF 72 -6.6 -4.22927 | opp_overlap 531806 GATGCCTAAAGGTAT TTATTCCCTTCT AGGAGA AGAAGGTAATAA TTTATCTGTTGGTCA mdlB 530377 - 532149 + | multidrug resistance-like ATP-binding protein MdlB dnaX 532444 - 533529 + | DNA polymerase III subunits gamma and tau TERM 570 533825 - 533813 - f 75 -2.7 -6.04324 | GTAAAAAATAAAAAA TATGA CTT TCACA TTACAAAAAAGAGAT ybaB 533849 - 534178 + | hypothetical protein TERM 571 534218 - 534238 + F 80 -7.1 -4.82667 | opp_overlap 534212 534218 534222, overlap 534222 TATGCTAAATAAGTA TAAATTTAT TGA ATAAATTTA TTTTTACTATGATAA TERM 572 535448 - 535436 - g 70 -6.3 -4.12448 | opp_overlap 535434, overlap 535434 AAATAATGAAAAATA CCAAA TTT TTTGG AATCAATTCGGTCTC TERM 573 535894 - 535874 - g 72 -4.7 -4.97888 | overlap 535876 AAAAAAAGTTAAAAA CATACTTGG CAA CCAAGTAAA AGATGTAAGATTAAC TERM 574 535892 - 535876 - g 87 -9.5 -4.05905 | overlap 535874 AAAAAGTTAAAAACA TACTTGG CAA CCAAGTA AAAGATGTAAGATTA htpG 534324 - 536198 + | heat shock protein 90 TERM 575 536239 - 536206 - f 78 -4 -5.72254 | opp_overlap 536209, overlap 536208 536209 TTAAATAATAAAAAA CATGATTACTACTA TTATAT TAGTAGTAATCTTT AGATTAACTTATACA TERM 576 536237 - 536208 - f 74 -6.6 -4.47161 | opp_overlap 536209, overlap 536206 536209 AAATAATAAAAAACA TGATTACTACTA TTATAT TAGTAGTAATCT TTAGATTAACTTATA TERM 577 536209 - 536236 + F 83 -10.1 -3.78811 | opp_overlap 536208 536206 536209 AATAATAAAAAACAT GATTACTACTA TTATAT TAGTAGTAATC TTTAGATTAACTTAT TERM 578 536236 - 536209 - f 79 -10.1 -3.24636 | opp_overlap 536209, overlap 536208 536206 AATAATAAAAAACAT GATTACTACTA TTATAT TAGTAGTAATC TTTAGATTAACTTAT adk 536271 - 536918 + | adenylate kinase TERM 579 536954 - 536968 + F 70 -7.8 -3.322 | TGAACCTGTGACCTA CGGCTT AGA AGGCCG TTGCTCTATCCAGCT folD 537149 - 538006 + | methenyltetrahydrofolate cyclohydrolase cysS 539397 - 538003 - | cysteinyl-tRNA synthetase TERM 580 539427 - 539452 + H 75 -9.3 -3.08371 | opp_overlap 539427 539432, overlap 539432 AAAAATATATTTAAA GAAAATAATAT AAAT ATATTATTTTC TATATTACCAATGTG TERM 581 539452 - 539427 - H 80 -9.3 -3.81473 | opp_overlap 539427 539432, overlap 539432 AAAAATATATTTAAA GAAAATAATAT AAAT ATATTATTTTC TATATTACCAATGTG TERM 582 539648 - 539628 - H 71 -4.9 -5.04082 | overlap 539617 GAAAGAATAATAAAA TATTTTTCT GTA AAAAAAATA GGGGTTAATAATGAA ybeD 539659 - 539922 + | hypothetical protein TERM 583 539989 - 539957 - T 75 -9.3 -3.15427 | opp_overlap 539948 539953 539964 539966 AATATTTTGTACTAA TATGGTACAGCTC TCTTTAG GAGCTGTACTATA AAACATATTTGTTTT TERM 584 540018 - 539998 - T 70 -8.5 -2.69458 | opp_overlap 539998, overlap 539997 539995 TACTATAAAACATAT TTGTTTTTA TAT TAAAAACAA TTGAATAACTTTATA TERM 585 539998 - 540018 + T 72 -8.5 -3.12446 | opp_overlap 539998 539997 539995 TACTATAAAACATAT TTGTTTTTA TAT TAAAAACAA TTGAATAACTTTATA cspE 540238 - 540029 - | cold shock protein E TERM 586 540487 - 540533 + r 83 -10.5 -3.63068 | gap 1, opp_overlap 540502, overlap 540502 AAAAAATAATTTATT TCAAGTATAAAAAAACCCGAAA AAAA TTTCGGGTTTTTTT-TCCTGGA TTTGACCTACTCTCA TERM 587 540519 - 540502 - R 100 -9.9 -5.71983 | opp_overlap 540487 540502 TCAAGTATAAAAAAA CCCGAAA AAAA TTTCGGG TTTTTTTTCCTGGAT TERM 588 540502 - 540519 + r 100 -9.9 -5.86965 | opp_overlap 540502, overlap 540487 TCAAGTATAAAAAAA CCCGAAA AAAA TTTCGGG TTTTTTTTCCTGGAT TERM 589 540748 - 540738 - R 76 -6.8 -4.62336 | opp_overlap 540738 AGTTTATTTTAAAAA CACC TCT GGTG TTGTAAGGTTAAGCC TERM 590 541438 - 541454 + r 73 -9.4 -2.53876 | opp_overlap 541428 CCAGACACTGTCTCT GTGCCG GATTA CGGCAC TAGGTTAGAATACCG TERM 591 542367 - 542383 + r 77 -8 -4.08546 | TTGGTTTTTCGGCGA GCAGGT TTTTC ACCTGC TTTATCGTTACTCAT TERM 592 543737 - 543749 + r 73 -4.9 -5.10163 | overlap 543746 TAAAGAGCTTTTTGT GTTAA ATG TTAAC TTTTCTTTTAAAGTT TERM 593 543803 - 543816 + r 71 -2.5 -5.73978 | opp_overlap 543803 TAAATTAGTATATAA TATTT TTAT AAATA TTTTTTATTTATCGT aroE 544873 - 544052 - | shikimate 5-dehydrogenase TERM 594 544221 - 544199 - G 93 -3.5 -6.23209 | opp_overlap 544199 544203 CCAATCAAAAAAAAA TGTATTATC TGTTT GATAATTCA TATCATAAAAGCATG TERM 595 544612 - 544626 + g 72 -5.7 -4.46267 | ACGTATTAACAGATT GAGCA ACTTC TGCTC TTTTAGTTAACTTAT rimN 545393 - 544866 - | dsRNA-binding protein, putative ribosome maturation factor (YrdC) TERM 596 545177 - 545190 + g 91 -3.9 -6.11392 | ATGGTCCAGGCCAAT GAAAA AAAA TTTTC TTTTTTTGTTTATTT smg 545964 - 545491 - | Smg protein TERM 597 545798 - 545818 + g 89 -7.7 -5.01732 | opp_overlap 545798 545796, overlap 545800 ATAGATGGAATAATA TTTTTCTTG TAA CAAGAAAGA TTTTTTAACCAACTT TERM 598 546095 - 546083 - H 75 -3.5 -5.69379 | opp_overlap 546083 ATATAATGAAAAAAA TTTTT ACT AAAAA ATATAATAAGTTTTT def 546208 - 546729 + | polypeptide deformylase TERM 599 547684 - 547656 - g 90 -3.3 -6.07627 | opp_overlap 547673, overlap 547659 547675 ATTTCTAAAAAAAAA TTATTTAAAATAG GAA CTATTTTATAAAA AAATATTTAATTTAT fmt 546738 - 547682 + | methionyl-tRNA formyltransferase TERM 600 547766 - 547738 - T 100 -8.9 -6.0458 | opp_overlap 547741 547746, overlap 547741 ATAAATTAAAAAAAA TAAGCAAACGGTA TAT TTCCGTTTGCTTT AAAATTATATTTTTT TERM 601 547741 - 547763 + T 83 -10.6 -3.72485 | opp_overlap 547738 547741, overlap 547746 AATTAAAAAAAATAA GCAAACGGTA TAT TTCCGTTTGC TTTAAAATTATATTT TERM 602 547763 - 547741 - T 95 -10.6 -5.01676 | opp_overlap 547741 547746, overlap 547738 AATTAAAAAAAATAA GCAAACGGTA TAT TTCCGTTTGC TTTAAAATTATATTT rplQ 548201 - 547809 - | 50S ribosomal protein L17 rpoA 549235 - 548246 - | DNA-directed RNA polymerase alpha subunit rpsD 549884 - 549264 - | 30S ribosomal protein S4 rpsK 550305 - 549910 - | 30S ribosomal protein S11 rpsM 550679 - 550323 - | 30S ribosomal protein S13 rpmJ 550889 - 550773 - | 50S ribosomal protein L36 secY 552228 - 550915 - | preprotein translocase SecY TERM 603 551476 - 551498 + g 86 -7 -5.05601 | opp_overlap 551462, overlap 551462 551477 ACGACGACCTTGTTG ACGTTGTGCA TAA TGTACAACGA TTTTTCTCTGTCCTC TERM 604 551477 - 551497 + g 88 -10.5 -3.62276 | opp_overlap 551462, overlap 551462 551476 CGACGACCTTGTTGA CGTTGTGCA TAA TGTACAACG ATTTTTCTCTGTCCT rplO 552673 - 552239 - | 50S ribosomal protein L15 rpmD 552857 - 552678 - | 50S ribosomal protein L30 rpsE 553370 - 552867 - | 30S ribosomal protein S5 TERM 605 553285 - 553297 + g 70 -4.7 -4.7254 | AAAGAAAATATTCGA CCGCC TTT GACGG TTTTTGATACACGAT rplR 553754 - 553386 - | 50S ribosomal protein L18 rplF 554313 - 553756 - | 50S ribosomal protein L6 rpsH 554695 - 554303 - | 30S ribosomal protein S8 rpsN 555029 - 554724 - | 30S ribosomal protein S14 rplE 555586 - 555047 - | 50S ribosomal protein L5 TERM 606 555255 - 555239 - G 75 -8.7 -3.33671 | AGAGTGACTTGATAA TCCGCGA AAA TCGCGAA TACGTGGAACAGCAA rplX 555915 - 555601 - | 50S ribosomal protein L24 rplN 556309 - 555941 - | 50S ribosomal protein L14 TERM 607 556376 - 556416 + r 82 -5 -5.78622 | gap 1, opp_overlap 556378 556383, overlap 556378 556383 556415 CTGACATTTTATGAA CAT-AAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTGATA TTTTTTTTAAAATAC TERM 608 556378 - 556413 + r 91 -11.4 -3.30685 | opp_overlap 556378 556383, overlap 556376 556383 GACATTTTATGAACA TAAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTG ATATTTTTTTTAAAA TERM 609 556383 - 556408 + r 89 -9.1 -4.66395 | opp_overlap 556378 556383, overlap 556378 556376 TTTATGAACATAAAA CATGAGCAGAC GTGA GTTTGTTCATG TTTTGATATTTTTTT rpsQ 556674 - 556423 - | 30S ribosomal protein S17 rpmC 556871 - 556674 - | 50S ribosomal protein L29 TERM 610 556825 - 556839 + g 86 -2.2 -6.24157 | TGTAAAAGTTCTGTG TAAAGA TCT TTTTTA TTTTTTTTTCTAAAT rplP 557281 - 556871 - | 50S ribosomal protein L16 rpsC 558003 - 557302 - | 30S ribosomal protein S3 TERM 611 557478 - 557492 + g 70 -8.6 -2.752 | opp_overlap 557481 557483, overlap 557483 TTGCGCGTAATGTAT GAAGAG GAA CTCTTC CTTCTCTATACCACT rplV 558354 - 558022 - | 50S ribosomal protein L22 rpsS 558668 - 558390 - | 30S ribosomal protein S19 rplB 559509 - 558688 - | 50S ribosomal protein L2 rplW 559826 - 559524 - | 50S ribosomal protein L23 rplD 560428 - 559823 - | 50S ribosomal protein L4 rplC 561075 - 560446 - | 50S ribosomal protein L3 rpsJ 561417 - 561106 - | 30S ribosomal protein S10 TERM 612 561702 - 561670 - R 95 -12.3 -3.38966 | opp_overlap 561674 561679, overlap 561674 561679 TATAATACATATTAA TCAAGAAAAGAGCAT CTT ATACTCTTTTCTTAA TAAATTCAACTTTGA TERM 613 561674 - 561698 + r 73 -8.7 -3.22091 | opp_overlap 561674 561670 561679, overlap 561679 ATACATATTAATCAA GAAAAGAGCAT CTT ATACTCTTTTC TTAATAAATTCAACT TERM 614 561698 - 561674 - R 83 -10.9 -3.4493 | opp_overlap 561674 561679, overlap 561670 561679 ATACATATTAATCAA GAAAAGAGCAT CTT ATACTCTTTTC TTAATAAATTCAACT tufB 562933 - 561749 - | elongation factor EF-Tu fusA 565109 - 563001 - | elongation factor G TERM 615 565159 - 565141 - R 79 -6.8 -5.02074 | TTAGGTTTTAAAAAA TTGAGTCT CAT AAACTCAA TTGAGATAATTGCCT rpsG 565694 - 565224 - | 30S ribosomal protein S7 rpsL 566110 - 565736 - | 30S ribosomal protein S12 yheL 566531 - 566244 - | sulfur transfer protein complex, TusB subunit (YheL) yheM 566902 - 566543 - | sulfur transfer protein complex, TusC subunit (YheM) yheN 567307 - 566921 - | sulfur transfer protein complex, TusD subunit (YheN) fkpA 568115 - 567390 - | FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor argD 569803 - 568577 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 616 568831 - 568851 + g 74 -2 -5.63857 | overlap 568825 TAAAACGTTTATTAA TAATATTT AATTC AGATATTA TTTTTTTAGATTTTT TERM 617 570074 - 570064 - H 78 -2.6 -6.18768 | opp_overlap 570064 570073, overlap 570073 AAAATATAAAAAAAA TATA ATA TATA TAAATTATATTTTTA TERM 618 570357 - 570341 - g 74 -2.3 -5.56568 | opp_overlap 570344, overlap 570344 ATATCATTAAAAAAA CAACTAA TAT TTAGTTT TATACTTACTATTAT TERM 619 570960 - 570975 + G 77 -6.2 -4.64676 | TTACAAGCATGTCTA CAATAC TTAT GTATTG TTTTATTAAAAGTGA TERM 620 571215 - 571231 + G 73 -3.1 -5.46276 | opp_overlap 571218 TAATTAGTTCAAATA TATTATA TGG TATAGTA TTTTTTCTATCTATT yhfC 570119 - 571285 + | YhfC MFS transporter TERM 621 571323 - 571289 - T 76 -6 -4.99035 | opp_overlap 571321, overlap 571321 GGAGTTATATAAAAA TTATTTATAATACAAA ATA TCTGCATTAAAAATAA ACTAGAAGAAAATTC trpS 572354 - 571347 - | tryptophanyl-tRNA synthetase TERM 622 572165 - 572155 - G 76 -4 -5.40464 | opp_overlap 572155 572164 CAGGATAAATAAAAA GATA TTG TATC TAGTATAGATTTATT rpe 573063 - 572377 - | ribulose-phosphate 3-epimerase TERM 623 573769 - 573788 + r 78 -6.6 -4.86133 | opp_overlap 573755 573769 573768, overlap 573755 ATTGTTTTAAAAAAG CAATATTT TAAA AAATATTG TTTTTACTCTCTATA aroB 575038 - 573947 - | 3-dehydroquinate synthase aroK 575577 - 575056 - | shikimate kinase I TERM 624 576182 - 576170 - R 75 -3.5 -5.86061 | TCTCACCAAAAAAAA TAAAA CAC TTTTA TAAAACAGATTCCAA deoD 576884 - 576180 - | purine nucleoside phosphorylase deoB 578151 - 576928 - | phosphopentomutase prfC 579789 - 578209 - | peptide chain release factor 3 TERM 625 579336 - 579360 + g 77 -7.9 -4.2461 | CATCAAGAATTTCTA TTGGATCTCGA CTA TCGCGATCTAA TTTATTAATAAAAGT TERM 626 580175 - 580163 - R 81 -6.3 -5.48054 | AGCAAAATGAAAAAA TCATC TCA GATGA CACAGAAAAAACTTA nfuA 581479 - 580901 - | iron-sulfur cluster scaffold protein (YhgI) TERM 627 581563 - 581583 + r 71 -8.5 -2.97029 | opp_overlap 581563, overlap 581562 581565 TAAGTTATAAATAAA TATTTTCTT TAA AAGAAAATA CTTTAGTTAATAAAA TERM 628 581583 - 581563 - R 87 -8.5 -4.59089 | opp_overlap 581563 581562 581565 TAAGTTATAAATAAA TATTTTCTT TAA AAGAAAATA CTTTAGTTAATAAAA TERM 629 581752 - 581732 - R 75 -4.1 -5.67711 | overlap 581733 581734 581736 CAAATAAAATAAAAA TTTATCTTT ATC AAAGATAGA TAAAAACAATTAAAT TERM 630 582043 - 582060 + r 100 -11.3 -5.24551 | ATGAAAAAATGCGTT GCCCCAA AAAA TTGGGGC TTTTTATTGATTTGA ssb 582607 - 582092 - | single-strand binding protein TERM 631 583200 - 583190 - H 81 -2.6 -6.32976 | AAAAAAATAAAAAAA TTTT CAA AAAA TGACTCAAATAGATC dnaB 583277 - 584674 + | replicative DNA helicase gshB 584921 - 585883 + | glutathione synthetase yqgF 585894 - 586301 + | predicted Holliday junction resolvase (YqgF) TERM 632 586400 - 586387 - f 93 -3.9 -6.48081 | opp_overlap 586394 586396, overlap 586394 TCTATAAAAAAAAAA TACAA GATA TTGTA AAAAACAATAATCTT yggS 586419 - 587021 + | hypothetical protein yggW 587064 - 588194 + | predicted oxidoreductase (YggW) trmI 588920 - 588201 - | tRNA (m7G46) methyltransferase (YggH) TERM 633 589331 - 589321 - gH 73 -5.4 -4.7064 | AAGAAAAAATATAAA GGAA TAT TTCC GGATCAATTTTCAAA mutY 589018 - 590070 + | A/G-specific adenine glycosylase TERM 634 590072 - 590049 - gf 75 -7 -4.23434 | opp_overlap 590049, overlap 590063 GAAAATACTTGAAAA TTTTAAAAAA AATA TTTTTTAAAA AAAGGAGTATTAAAA yggX 590042 - 590323 + | protein that protects iron-sulfur proteins against oxidative damage (YggX) TERM 635 591115 - 591096 - g 80 -5.2 -5.27477 | opp_overlap 591096, overlap 591109 ATGTTAATCAAAAAA TAAAAAAA AATA TTTTTTTA TATTCAAAAAACAAT TERM 636 591154 - 591127 - g 80 -5.8 -5.1287 | opp_overlap 591150, overlap 591150 TTTATATTCAAAAAA CAATAATAATTT AAAG AAACTATTATCG TTTTTAAAACAATAT murI 590417 - 591205 + | glutamate racemase yeeX 592718 - 593026 + | hypothetical protein TERM 637 593130 - 593156 + F 77 -2.5 -6.06723 | TATATATACCAAAAA TTTTTATGTGT GTCAA ATATATAAAAA TTTTTTTTTAAAAAA TERM 638 593173 - 593157 - f 76 -5.3 -5.14985 | overlap 593158 TCAAATATATAAAAA TTTTTTT TTA AAAAAAA ATAAAATTTCTAAAA pyrE 593408 - 594049 + | orotate phosphoribosyltransferase dut 594525 - 594061 - | deoxyuridine 5'-triphosphate nucleotidohydrolase cysQ 595366 - 594569 - | CysQ protein TERM 639 594900 - 594910 + g 76 -4 -5.38549 | ACATTAATCTTTTTC TTTG ATC CAAA TTTTTCTTCTTTCCA rplI 595805 - 595353 - | 50S ribosomal protein L9 rpsR 596081 - 595854 - | 30S ribosomal protein S18 rpsF 596548 - 596207 - | 30S ribosomal protein S6 TERM 640 596248 - 596266 + g 73 -4.6 -5.00884 | TTAATTTCAAAATAG GTGATAGT TCG ACTATTGC TTTTTTCACAGACAT vacB 598951 - 596714 - | VacB protein TERM 641 597583 - 597609 + g 71 -7.5 -3.65542 | opp_overlap 597589, overlap 597582 TTTTAATTCGAAGGT TAGAATCTAAA ACAAA TTTAGGTTCTA TATTTTCAAAATAAA TERM 642 598121 - 598155 + g 75 -5.2 -4.95806 | overlap 598118 AAAAGGGAAATGTCG TAAATCTGTACGATTT TTA AAATCATATTGATTTA TTTTTCTACTAATTT purA 600340 - 599039 - | adenylosuccinate synthetase TERM 643 600074 - 600084 + g 76 -4 -5.5454 | AACAAAAATATTATG TGTT TCT AACA TTTTTATTTCTTTAA hflC 601322 - 600390 - | HflC protein hflK 602545 - 601325 - | HflK protein miaA 603610 - 602702 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 644 602764 - 602778 + g 78 -5.8 -4.82518 | opp_overlap 602764 602763 602766 CTAAAATAGTAGAAG TAGAAT GGT ATTCTA TTTTGTTAATATTTT TERM 645 603495 - 603475 - G 70 -8.3 -3.05616 | opp_overlap 603477, overlap 603474 603477 GATGATTATATAAAT CAGAAAAGC TTG GCTTATCTG TTCCAATATCCATTC mutL 605402 - 603648 - | DNA mismatch repair protein MutL TERM 646 604011 - 603998 - G 75 -5.3 -4.93877 | opp_overlap 603984 TTTGATTAAATAAAA TCAAG TATT CTTGA GATGTAAGATTAATT TERM 647 604307 - 604295 - G 77 -2 -5.75342 | opp_overlap 604295 TTTTTTTAAAAAAAA TTGA AGATA TCAA TGTTAAAAAAGTAGG TERM 648 604747 - 604733 - G 70 -8.6 -2.61004 | opp_overlap 604735, overlap 604732 604735 TTATTTCTAAAAATT CACTTG TAT CAAGTG TGTCAAATATATCTT TERM 649 605457 - 605447 - R 75 -4 -5.64274 | opp_overlap 605430 605447 CTATTTATAAAAAAA GAAT AGC ATTC TTTCAAATTTTGTAA mtlD 606659 - 605502 - | mannitol-1-phosphate 5-dehydrogenase TERM 650 605637 - 605649 + g 77 -4.9 -5.22006 | opp_overlap 605648 AGATGAAAGCTCTAT TGATT CCA AATCA TTTTTATTATGGTAA TERM 651 605919 - 605932 + g 74 -2.4 -5.74122 | TTCCATGGCAGATCT TACG ATAACA CGTA TTTTTTTGTCTGATA mtlA 608599 - 606701 - | PTS system mannitol-specific IIABC component TERM 652 608659 - 608675 + r 72 -5.3 -4.86862 | opp_overlap 608651 608658 608659 608662, overlap 608651 608658 CTTCAAATTAAATAT TAATAAT TAA ATTATTA TTTTAATTTTTTAAA pgi 610421 - 608772 - | glucose-6-phosphate isomerase TERM 653 609463 - 609445 - G 83 -4.7 -5.68023 | TCAGAACCAAAAAAA TTAGTAT ACCAA ATACTAA TTAAGGCTAATAATA TERM 654 609721 - 609705 - G 91 -6.6 -5.42514 | opp_overlap 609705 TGATAAAGCAAAAAA GTGCTT ATCTA AAGCAC TTTGATCTTGTGAAT TERM 655 609705 - 609721 + g 70 -6.6 -3.9749 | opp_overlap 609705 TGATAAAGCAAAAAA GTGCTT ATCTA AAGCAC TTTGATCTTGTGAAT TERM 656 610029 - 610042 + g 71 -3.9 -5.00616 | opp_overlap 610025, overlap 610025 ATGAATAACCATTTT TGAAA AATT TTTCA TTTTTTCCAACAACG orn 610735 - 611289 + | oligoribonuclease TERM 657 611316 - 611339 + F 70 -7 -4.0162 | opp_overlap 611316 611329 AGAAAACTTGAAAAA TTTATTTTAT ATAT ATAAAATAAA TTTATAGTATAAAAA TERM 658 611339 - 611316 - f 78 -7 -4.75063 | opp_overlap 611316, overlap 611329 AGAAAACTTGAAAAA TTTATTTTAT ATAT ATAAAATAAA TTTATAGTATAAAAA TERM 659 611419 - 611403 - f 74 -9.5 -2.62616 | overlap 611406 TCAGTTGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCAA TERM 660 611687 - 611675 - f 85 -3.5 -6.26417 | opp_overlap 611675 611676, overlap 611676 TATCAGAAAAAAAAA TTTTT TAA AAAAA ATAATTTTTATTATA amiB 611741 - 612439 + | N-acetylmuramoyl-L-alanine amidase precursor TERM 661 612464 - 612452 - T 72 -3.5 -5.66989 | opp_overlap 612458 612459, overlap 612443 612458 612459 TAAATATTAAAAAAA TAAAA GTT TTTTA AAAAATATTAATTGT rpmE 612779 - 612561 - | 50S ribosomal protein L31 TERM 662 612987 - 613002 + H 76 -4.8 -5.44198 | TGTATATGTTTTATT TTAATG TCTA CATTAA TTTTTATTGTTTATT hslV 613385 - 613897 + | ATP-dependent protease peptidase subunit hslU 613910 - 615241 + | ATP-dependent protease ATP-binding subunit TERM 663 615641 - 615625 - g 86 -10.9 -2.85838 | overlap 615622 AATTAACACTAAGTA TTCCTGG ATA CCAGGAA AAAGAATTAGATATA ibpA 615447 - 615920 + | 16 kDa heat shock protein A TERM 664 615976 - 615932 - f 100 -8.2 -5.81622 | gap 1, opp_overlap 615942, overlap 615939 ATAAAATTAAAAAAA TA-TAAAATCACTGCGCTTAT AAAA ATAAGCACAGTGATCTAACTA AAAATTATTGAGAAT TERM 665 615968 - 615939 - f 100 -14.5 -5.11475 | opp_overlap 615942, overlap 615932 TAAAAAAATATAAAA TCACTGCGCTTAT AAAA ATAAGCACAGTGA TCTAACTAAAAATTA TERM 666 616555 - 616565 + G 82 -5.4 -5.4505 | opp_overlap 616555 AAAAATTCTTTAAAT GGAA GAA TTCC TTTTTTATTAAGAAA fpr 615997 - 616755 + | ferredoxin-NADP reductase yjeA 617747 - 616773 - | lysyl-tRNA synthetase TERM 667 617692 - 617671 - G 70 -3.1 -5.27709 | opp_overlap 617671 617675 TTAGAAAAAAATAAA CGAATATTA GAAA TAATATTTG ATCTTTTGATTAAAT TERM 668 618179 - 618190 + G 71 -4.4 -4.87008 | overlap 618177 GTATATTTTTACTTT CTTC TAAA GAAG TTTCTTTTATATCTT kdtB 617818 - 618315 + | lipopolysaccharide core biosynthesis protein kDatB TERM 669 618362 - 618332 - T 81 -9.9 -3.72893 | opp_overlap 618334, overlap 618334 GATTTTTTTATCAAA TATAGTAGGGTAT GTTAT ATACCCTACTATT TATTTTTAACATTAT TERM 670 618360 - 618334 - T 95 -12.5 -3.44848 | opp_overlap 618334, overlap 618332 TTTTTTTATCAAATA TAGTAGGGTAT GTTAT ATACCCTACTA TTTATTTTTAACATT TERM 671 618334 - 618360 + T 100 -13.2 -4.88293 | opp_overlap 618334 618332 TTTTTTTATCAAATA TAGTAGGGTATG TTA TATACCCTACTA TTTATTTTTAACATT yba3 619505 - 618402 - | hypothetical protein yba4 619836 - 619498 - | hypothetical protein TERM 672 619554 - 619567 + g 74 -2.5 -5.66684 | overlap 619545 619542 TATCACTATTATCAG TAATA TTGT TATTA TTTTTTTCTAAATTA TERM 673 619872 - 619886 + H 72 -4.4 -5.47399 | opp_overlap 619874 AATTATTTTTTAGTA TATTTT TAT AAAATA TTTTTTTGAACTTAA yhiQ 619992 - 620732 + | predicted SAM-dependent methyltransferase (YhiQ) TERM 674 620774 - 620737 - T 71 -5.1 -5.01732 | gap 1, opp_overlap 620740 620742, overlap 620740 AACCTTTTTAAAAAA TA-ATAGGAGTACATTTC TTT AACACGTACTCCTATCTA ATCAAATAATTTTAC TERM 675 620770 - 620740 - T 87 -8.4 -4.61482 | opp_overlap 620740 620742, overlap 620737 CTTTTTAAAAAATAA TAGGAGTACATTTC TTT AACACGTACTCCTA TCTAATCAAATAATT pitA 622287 - 620815 - | low-affinity inorganic phosphate transporter TERM 676 621040 - 621062 + g 78 -5.7 -4.99643 | gap 1, overlap 621038 AGCTGTTATTTGAGC TGACATA-GC TTGT GCATATGTCA TTCTTTTTTTTCCTA TERM 677 621404 - 621383 - G 79 -8.9 -3.49102 | opp_overlap 621382 ATATTTTTTATAGAA TTGTAAGAT TGAG ATCTTACAA CTAAATTATTGATTT TERM 678 621453 - 621471 + g 80 -6.2 -4.89339 | TATTTGATTTTTTTA TATTTTTT TCT AAAAAATA TTTTTCTAAATGATT TERM 679 621668 - 621687 + g 73 -4.3 -5.07486 | opp_overlap 621668, overlap 621651 ATTCTAATTAGAAAT GGTGGTA TTTTTT TACCATC TTTTTCTTCACGCTC TERM 680 622457 - 622438 - R 81 -5.2 -5.61596 | opp_overlap 622438 ATTTTTATAAAAAAA TTAAAAAT ATTT ATTTTTAA AATTTTTTTTGTTTT dapF 624560 - 623706 - | diaminopimelate epimerase TERM 681 624230 - 624247 + g 70 -2.1 -5.42605 | TAGTTAAAGGTTTTT TTTTAGT ACTA ATTAAAA TTTTCTTTTTATTAG cyaY 624748 - 625098 + | CyaY protein TERM 682 625191 - 625171 - f 75 -2.7 -5.93252 | opp_overlap 625164 625174, overlap 625164 625174 TTTAAAAATAAAAAA TATTTTTAT TTA ATAAAATTA TAAAAAATGCATCTA hemC 625226 - 626170 + | porphobilinogen deaminase TERM 683 627015 - 627035 + T 78 -2.7 -6.09133 | opp_overlap 627015 TTCGCCGTTTTCAAA TAAAAAAAT ATA ATTTTCTTA TTTTTTTTTGGGGTG rho 628668 - 627409 - | transcription termination factor Rho trxA 629124 - 628798 - | thioredoxin TERM 684 629312 - 629333 + r 90 -7.5 -5.63504 | ATTTTATATCTTCTT TTTTTTAGA TGAA TCTAAAAAA TTTTTTTCTCCCATT rep 631263 - 629326 - | ATP-dependent DNA helicase Rep TERM 685 629669 - 629652 - G 80 -9.9 -2.81922 | overlap 629651 629649 629654 TATCATCTAAAATAT CACGGAT TGTC ATCCGTG TAACAATTTGAAATA ilvC 632805 - 631333 - | ketol-acid reductoisomerase TERM 686 631399 - 631415 + g 70 -2.3 -5.42514 | overlap 631385 GCATCCGATAATTTC TATAGGA TGA TTCTGTA TTTTTTGATTTATCC ilvD 634706 - 632853 - | dihydroxy-acid dehydratase TERM 687 634220 - 634231 + g 70 -3 -5.25154 | opp_overlap 634215 634220, overlap 634215 TAGCATCAACTAAAT CAAT TTTT ATTG TTTTATTATTTTTTT mltF 635193 - 636407 + | membrane-bound lytic murein transglycosylase F (YfhD) iscU 636438 - 636821 + | Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly TERM 688 636836 - 636865 + F 74 -7.3 -4.1922 | overlap 636831 636838 ACTTTATAATTATTT GGTGTTGAAAGAA TATT TTCTTTCAACATA TTATATTTTATTTTT TERM 689 636838 - 636863 + F 95 -12.1 -3.63424 | overlap 636836 636831 TTTATAATTATTTGG TGTTGAAAGAA TATT TTCTTTCAACA TATTATATTTTATTT hscB 636916 - 637440 + | chaperone protein HscB TERM 690 638935 - 638920 - g 95 -3.4 -6.4753 | opp_overlap 638921, overlap 638921 GTAAAGAAAAAAAAA TTATTA TTGA TAATAA TATTACATTAAAAAA TERM 691 638937 - 638921 - g 70 -5.3 -4.44858 | opp_overlap 638921, overlap 638920 TAAAGAAAAAAAAAT TATTATT GAT AATAATA TTACATTAAAAAATT TERM 692 638975 - 638951 - g 76 -4.5 -5.23316 | opp_overlap 638943, overlap 638943 638968 638971 TATTACATTAAAAAA TTTAAATATTT CTC AAATATTGAAA GATTCATTAAAACAT hscA 637452 - 639287 + | heat shock protein HscA fdx 639287 - 639622 + | ferredoxin 2fe-2s yfgK 640980 - 639619 - | 50S ribosomal subunit stability factor (YfgK) TERM 693 639905 - 639921 + g 76 -8.1 -3.82097 | opp_overlap 639908, overlap 639897 639908 CTAATCTTTCTTTTA GAATCTT CAT AAGATTC TTTGATAGATTTAAA TERM 694 640401 - 640427 + g 91 -3.8 -5.95166 | opp_overlap 640407, overlap 640403 640404 TTCCAACATTTGGTC GACCAATAAAAG CTA CTTTTATTGCTA TTTTTTTTAATTCCG TERM 695 640403 - 640425 + g 74 -6.4 -4.61485 | opp_overlap 640407, overlap 640401 640404 CCAACATTTGGTCGA CCAATAAAAG CTA CTTTTATTGC TATTTTTTTTAATTC TERM 696 640404 - 640424 + g 85 -9.9 -3.34451 | opp_overlap 640407, overlap 640403 640401 CAACATTTGGTCGAC CAATAAAAG CTA CTTTTATTG CTATTTTTTTTAATT yfgM 641655 - 641074 - | hypothetical protein TERM 697 641123 - 641175 + g 77 -2.9 -5.74288 | overlap 641126 TTAATAATTTCTTTA GATGCATTAGAATCTTCAATAAAAA GAC TTTTTTTCCAAGATTTTATTGCTTC TTTTTTATTGTTTAT