TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.723735 %AT, 552093 nt, 3631 terms. Intergenic: 0.804743 %AT, H2T: 74685 nt, 901 terms; T2T: 15115 nt, 451 terms; H2H: 22893 nt, 721 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|10957099|ref|NC_002252.1| Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pTrp, complete sequence (length 7258) TERM 1 171 - 181 + G 70 -8.2 -2.97747 | AATGATTGTCGATAG CGCG ATA CGCG TCTCTGCTGTCAAGA TERM 2 292 - 280 - g 79 -3.5 -5.61277 | overlap 281 CATAAAAAAATAAAA TTTTT TGA AAAAA ACAAAAGTATCAACT TERM 3 502 - 521 + G 72 -3.7 -5.27335 | opp_overlap 502, overlap 496 AATGTAAAGAAAAAA CAAAAAT GCCCGG ATTTTTG TTTTTATTTAGCAGA TERM 4 521 - 502 - g 79 -3.7 -5.67283 | opp_overlap 502 496 AATGTAAAGAAAAAA CAAAAAT GCCCGG ATTTTTG TTTTTATTTAGCAGA trpE 1 - 1566 + | anthranilate synthase component I TERM 5 1801 - 1815 + G 78 -7.2 -4.47183 | AAGTCAAGGGGGACA TTCCTA TAG TAGGAA TTTGTTTAGGTCATC trpG 1569 - 2171 + | anthranilate synthase component II TERM 6 2183 - 2198 + F 72 -3.2 -5.53288 | opp_overlap 2183 ATAAAAAAAAAGATT CTACTC AAAC GAGTCG TTTTTTTAAATTCCA TERM 7 3242 - 3256 + F 93 -4.4 -6.47228 | overlap 3246 TACTCTAACATTATG TTTTTT ATA AAAAAA TTTTTTTTTTAATTC TERM 8 3920 - 3908 - f 72 -3.5 -5.61277 | overlap 3909 CATAAAAAAATAAAA TTTTT TGA AAAAA ACAAAAGTATCAACT TERM 9 4149 - 4130 - f 72 -3.7 -5.67283 | opp_overlap 4130 4124 AATGTAAAGAAAAAA CAAAAAT GCCCGG ATTTTTG TTTTTATTTAGCAGA TERM 10 5431 - 5445 + G 78 -7.2 -4.47183 | AAGTCAAGGGGGACA TTCCTA TAG TAGGAA TTTGTTTAGGTCATC trpG2 5199 - 5801 + | anthranilate synthase component II SEQUENCE gi|10957103|ref|NC_002253.1| Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pLeu, complete sequence (length 7786) repA1 1197 - 346 - | replication-associated protein RepA1 TERM 1 1231 - 1255 + H 100 -8.9 -5.44638 | GTAAGTGGGTTCATT TTTTATATATT TCA AATATATAAAA TTTTATTTTTATTCT yqhA 1514 - 2017 + | hypothetical protein RepA2 2357 - 2893 + | replication-associated protein RepA2 TERM 2 2965 - 2915 - f 100 -27.6 -5.24796 | opp_overlap 2915 TTTATACAATAAAAA TTTCATAAGACATCATATACAAAA TTA TTTTGTATATGATGTCTTATGAAA TTTTTATTGTATAAA TERM 3 2915 - 2965 + F 100 -27.6 -5.24796 | opp_overlap 2915 TTTATACAATAAAAA TTTCATAAGACATCATATACAAAA TTA TTTTGTATATGATGTCTTATGAAA TTTTTATTGTATAAA TERM 4 4571 - 4559 - g 75 -3.5 -5.5074 | overlap 4566 CAAGTTAACAAAAAA TTAAA AAT TTTAA AAGATTTTAAAAAAA TERM 5 4583 - 4566 - g 76 -4.3 -5.27769 | overlap 4559 4576 ACAAAAAATTAAAAA TTTTAAA AGAT TTTAAAA AAAAATAATACATCT leuA 3032 - 4591 + | 2-isopropylmalate synthase TERM 6 4735 - 4749 + G 77 -2.2 -5.82281 | opp_overlap 4728, overlap 4737 ATGTAAAATTTTAAA TGTTTT AAA AAAATA TTTTTTTCTATCTTT leuB 4652 - 5743 + | 3-isopropylmalate dehydrogenase TERM 7 6490 - 6501 + G 80 -5.8 -5.00616 | overlap 6500 AAAATAAAATGTATG CACC ACGT GGTG TTTTTTGGAAAAAAG leuC 5733 - 7160 + | isopropylmalate isomerase large subunit TERM 8 7349 - 7333 - g 72 -3.7 -5.2189 | overlap 7325 TCAATTAGTAAAAAA TGAGGAT TTT ATACTCA ATAAAAAAATTTATA leuD 7163 - 7786 + | isopropylmalate isomerase small subunit SEQUENCE gi|15616630|ref|NC_002528.1| Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete genome (length 640681) gidA 197 - 2083 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA atpB 2278 - 3102 + | F0F1 ATP synthase subunit A atpE 3139 - 3378 + | F0F1 ATP synthase subunit C TERM 1 3462 - 3434 - f 78 -7.6 -4.58424 | opp_overlap 3429 3434 3430, overlap 3429 GATTATTACATAAAA TCTTTACGTTTT TTTAG ATAACGTAAAGA TTAATTTTCATATTG TERM 2 3434 - 3462 + F 75 -8.3 -3.75465 | opp_overlap 3429 3434, overlap 3429 3430 GATTATTACATAAAA TCTTTACGTTTTT TTA GATAACGTAAAGA TTAATTTTCATATTG atpF 3497 - 3982 + | F0F1 ATP synthase subunit B atpH 3982 - 4515 + | F0F1 ATP synthase subunit delta TERM 3 4826 - 4810 - g 72 -6.6 -4.2349 | GGTGTACAGGGAAAA TACTGG AAGTG CCAGTA GGTGATAATTTTTTA TERM 4 4888 - 4903 + G 71 -2.6 -5.44119 | gap 1 TTGATGGAAAGGATT CCATACA AAA TG-ATGG TTTTTTTCCAGTAGA TERM 5 4957 - 4939 - g 70 -8.2 -3.14211 | ATGCTCCTGGAGTAA TTGACCGA AAA TCAGTCAA CCAGCCTATACAAAC TERM 6 5224 - 5202 - g 70 -8.4 -2.72879 | opp_overlap 5201, overlap 5199 AATACAATCATAGTA GTAGCTTCTG CTT CAGAAGCCGC ATCCTTACAATATTT atpA 4530 - 6068 + | F0F1 ATP synthase subunit alpha TERM 7 6087 - 6074 - f 72 -3.9 -5.47399 | TCAATTTTAAAAAAA TAACT AATA AGTTA AAAAGAGAAAATAGT TERM 8 6170 - 6159 - g 74 -2.2 -5.63374 | CCAATACTAAAAAAA TCAC TAAA GCGA TGGAAATGGTGGCAG atpG 6101 - 6973 + | F0F1 ATP synthase subunit gamma TERM 9 7807 - 7823 + G 84 -9.5 -3.53091 | opp_overlap 7820, overlap 7783 CGGATGCCGTCAGCA GTAGGTT ATC AACCTAC TTTAGCAGAAGAAAT atpD 6997 - 8394 + | F0F1 ATP synthase subunit beta atpC 8421 - 8837 + | F0F1 ATP synthase subunit epsilon TERM 10 8902 - 8886 - T 82 -6.7 -5.2189 | opp_overlap 8879, overlap 8899 GCAAGTACTAAAAAA TTTATTC TAA GAATAAA AAATATTTTTAAACG gyrB 11322 - 8911 - | DNA gyrase subunit B TERM 11 9007 - 9019 + g 70 -7.7 -3.50722 | opp_overlap 9006 ATTAAATAAATTATT TGCAG AAA CTGCA TCTTTGATAGTTACC TERM 12 10760 - 10786 + g 72 -6.8 -4.07535 | opp_overlap 10767, overlap 10762 10767 TCACGCAAACGTTTA GATAAAATTTCA TAT TGAAATTTTATA TTATTTGTAAAAGTT TERM 13 10762 - 10784 + g 84 -9.4 -3.62695 | opp_overlap 10767, overlap 10760 10767 ACGCAAACGTTTAGA TAAAATTTCA TAT TGAAATTTTA TATTATTTGTAAAAG TERM 14 10767 - 10779 + g 72 -4.9 -4.86029 | opp_overlap 10767, overlap 10762 10760 AACGTTTAGATAAAA TTTCA TAT TGAAA TTTTATATTATTTGT dnaN 12549 - 11449 - | DNA polymerase III beta chain dnaA 13918 - 12554 - | chromosomal replication initiator protein DnaA TERM 15 12825 - 12840 + g 79 -4.8 -5.55769 | ACTGTTTTTTGGATA TTATCA ATAG TGATAA TTTTTTCTTGTACAG TERM 16 13714 - 13734 + g 84 -4 -5.82316 | opp_overlap 13713 TTAATGGAGAATTAG TACCGCAA TAATC TTGCAGTA TTTTTTTTAAATGAT TERM 17 13998 - 14033 + H 76 -5.1 -5.47159 | opp_overlap 14000, overlap 13996 14000 GTTTACTTTGATATA TATAATTTTATATAA TTTTTT TTATATGAAATTATG TTTTTTATATTAAAA rpmH 14369 - 14512 + | 50S ribosomal protein L34 rnpA 14525 - 14872 + | ribonuclease P protein component TERM 18 15173 - 15157 - g 82 -2.4 -6.11644 | opp_overlap 15168, overlap 15168 TGATGTAAAAAAAAA TAAAAA GAAAA TTTTTA TCAAAAATGATGTAA TERM 19 15180 - 15168 - g 75 -3.5 -5.51078 | opp_overlap 15168, overlap 15157 AAAATAAAAAGAAAA TTTTT ATC AAAAA TGATGTAATTAGTTT yidC 15011 - 16609 + | 60 kDa inner-membrane protein TERM 20 16905 - 16919 + G 71 -7.2 -3.78775 | ACAAGGCCATGGTAG TCCATT AAT AATGGA TTTACTAATAAGAAG TERM 21 17311 - 17340 + G 93 -10.8 -3.77264 | AAAAAAATCGTAATT GCTGGACTTCCT AATTCC GGGAAGTCTAGC TTATTAAATATTTTA TERM 22 17517 - 17545 + G 80 -6.1 -4.99861 | opp_overlap 17522, overlap 17522 TATCATGCGTGCTTG GGAAATGATTAGA AAA TCTGATCATGTTC TTTTTGTAATTGATA TERM 23 17807 - 17850 + G 70 -4.7 -4.65895 | gap 1 AAAGTGTTTTCATTG CTCGTCGT-CGTCATATCAA ACAAC TTGATTTAGCGTACGATGAG TTTTTAACTGCCGAA trmE 16648 - 18009 + | tRNA modification GTPase TrmE TERM 24 18059 - 18075 + F 70 -8.7 -2.62616 | opp_overlap 18049, overlap 18050 TTGAACCACCGACAC GGGGATT TTC AGTCCCC TGCTCTACCAACTGA TERM 25 18144 - 18158 + F 75 -4.4 -5.59879 | overlap 18151 18153 AAATGTTGTCAATGT TTTTTA TTG TAAAAA TTTTTTATATTTATA TERM 26 18261 - 18245 - f 73 -2.4 -5.95539 | TCTTAAATAAAAAAA TAAAAA AATAA TTTTTA CCCTTGAAAGTTTTA groES 18376 - 18666 + | co-chaperonin GroES groEL 18715 - 20361 + | chaperonin GroEL TERM 27 20439 - 20408 - f 73 -7.4 -3.95535 | opp_overlap 20410, overlap 20406 20409 ACAATTTTAAAAATA CCTTTCCTCAGAAT CACT ATTCTGAGGAAATT TTTTATGTTCTTTGA TERM 28 20438 - 20409 - f 81 -10.9 -2.96237 | opp_overlap 20410, overlap 20408 20406 CAATTTTAAAAATAC CTTTCCTCAGAAT CACT ATTCTGAGGAAAT TTTTTATGTTCTTTG TERM 29 20410 - 20437 + F 100 -14.4 -5.57729 | opp_overlap 20409 20408 20406 AATTTTAAAAATACC TTTCCTCAGAAT CACT ATTCTGAGGAAA TTTTTTATGTTCTTT efp 20985 - 21596 + | elongation factor P dnaC 22354 - 21614 - | DNA replication protein DnaC dnaT 22848 - 22354 - | primosomal protein I yhhF 23520 - 22945 - | hypothetical protein TERM 30 23022 - 23034 + g 87 -2.7 -6.22691 | TCCAATTTTTTGGTA CAATT ATG GATTG TTTTTTTTCTTGTTC TERM 31 23766 - 23749 - g 86 -7.1 -5.09685 | TAATACAGATAAAAA TCATGAT ATTA ATCATGA AGACTTATATACCAA ftsY 23651 - 24787 + | cell division protein FtsY TERM 32 24854 - 24872 + F 80 -7.6 -4.87291 | TTTAATTATTTTTTG TATAAATC TTT GATTTATA TTTTTAATTAAAGTA TERM 33 24979 - 24963 - g 71 -8.1 -3.17416 | overlap 24962 AAATGATTAATAAAG TACAGAT TTT ATCTGTA ACACCACCAGGTAAT rpoH 24950 - 25804 + | RNA polymerase factor sigma-32 TERM 34 25848 - 25835 - T 77 -2.5 -6.10295 | opp_overlap 25817, overlap 25817 25815 25836 TTAATACAAAAAAAA TTTTT TATT AAAAA TTATTTATATAGAGT glmS 27774 - 25945 - | D-fructose-6-phosphate amidotransferase TERM 35 26183 - 26197 + g 75 -7.2 -4.07885 | ATATTTTTTTTATTT TTCTCT AAT AGAGAA TTTTCAGGAGCAATC TERM 36 27459 - 27445 - G 72 -5.7 -4.56597 | opp_overlap 27445 27444 27456 TTGTTTTTTTAAAAA TCCAC GCAGT GTGGA ATTGTTTTCAATAAT TERM 37 27456 - 27478 + g 75 -8.6 -3.48593 | opp_overlap 27445, overlap 27445 27444 AAAATCCACGCAGTG TGGAATTGTT TTC AATAATTCCA TTATGTACAACAATA TERM 38 27573 - 27584 + g 100 -3 -6.67286 | TATGAGCAACTCCAA TACT ACCA AGTA TTTTTTTTTTATTTG glmU 29223 - 27844 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 39 29778 - 29754 - g 70 -5.1 -4.64159 | opp_overlap 29754 ATAAATAATAATAAA GTAGAAAATAA TTT TTGTTCTCTAC TTTCATCATTGCAAT yigL 29403 - 29972 + | hypothetical protein cof 30011 - 30220 + | Cof protein TERM 40 30232 - 30247 + F 75 -2.6 -6.0458 | opp_overlap 30233, overlap 30233 30241 ATAAAGTTATAAAAA TTTCTT ATAC AAGAAG TTTTTTTTGATTTCT metE 31191 - 33467 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 41 33555 - 33504 - T 79 -10 -3.30218 | gap 1, opp_overlap 33504 33503 33501 33506 33511, overlap 33496 33511 TATAATATAATTTAA TATTAAATCATC-TTTTAGAATATT TTA AAAAATCTAAAATGATGATTTAATA CTTATAAATTTTTAT TERM 42 33504 - 33555 + T 78 -10 -2.73575 | gap 1, opp_overlap 33496 33504 33511, overlap 33503 33501 33506 33511 TATAATATAATTTAA TATTAAATCATC-TTTTAGAATATT TTA AAAAATCTAAAATGATGATTTAATA CTTATAAATTTTTAT purH 35167 - 33590 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 43 34370 - 34388 + g 84 -9 -3.9093 | TACACACTCTAATGC TATATCAG AAT CTGATATA TTATTATATGATAAA TERM 44 35273 - 35287 + r 80 -8.5 -3.98745 | opp_overlap 35265 35273 ATACTAATTTAGTAA GGGGC ACTAC GCCCC TTCTTTAAATACTTC TERM 45 35287 - 35273 - R 76 -9.2 -3.23152 | opp_overlap 35273, overlap 35265 ATACTAATTTAGTAA GGGGCA CTA CGCCCC TTCTTTAAATACTTC hupA 35586 - 35308 - | DNA-binding protein HU-alpha TERM 46 35737 - 35720 - R 74 -5.7 -4.9792 | opp_overlap 35719 35714 35720 TATTTGATATAAAAA GAAAAAA TATA TTTTTTC ATATTATAAATTCTA TERM 47 35850 - 35828 - R 74 -5.8 -4.73635 | TACAATTGAATAAAA TTTAAATATA TAA TATATCTAAA AATCATCAAAAAAAT TERM 48 35901 - 35924 + r 70 -8.4 -2.62267 | opp_overlap 35900 35901, overlap 35900 35898 TTATTTTTAATAAAT TGTTATTTTT TTTA AAAAATAACA GTATTGATTTCTACA TERM 49 35924 - 35901 - R 72 -8.4 -3.09784 | opp_overlap 35901 35900 35898, overlap 35900 TTATTTTTAATAAAT TGTTATTTTT TTTA AAAAATAACA GTATTGATTTCTACA TERM 50 36018 - 36040 + r 75 -2.9 -5.93252 | overlap 36020 ATGAATTTGAAGCGT TTTTATATA AAATA TATATAAGA TTTTTTATTTTTAAA TERM 51 36266 - 36293 + r 70 -7 -4.12532 | overlap 36269 ATTATCATGTTTTTA CTGTGGCTGCTT TTAA GAGCAGCCATAA TTTATATATACAAAA TERM 52 36269 - 36290 + r 81 -10.9 -3.09116 | overlap 36266 ATCATGTTTTTACTG TGGCTGCTT TTAA GAGCAGCCA TAATTTATATATACA rpoC 40544 - 36321 - | DNA-directed RNA polymerase subunit beta' rpoB 44650 - 40622 - | DNA-directed RNA polymerase subunit beta TERM 53 41409 - 41431 + g 74 -6.4 -4.48902 | opp_overlap 41409 GGCATATCTTCAACA GGATTAATTT TAG AAATTACTCC TTTATTTCCATGTCT TERM 54 44673 - 44695 + r 71 -5 -4.96848 | CTAAGCTCGTTGACA GATAAGTTGA AAA TTAATTTATC TTTTTGTCTGAAGGG TERM 55 44745 - 44755 + r 78 -4 -5.85178 | CGTAAGAATTTTAAT TACA TTT TGTA TTTTTTTTAAATGTT TERM 56 44805 - 44835 + r 74 -8.2 -3.62478 | opp_overlap 44805 44807, overlap 44807 44808 TTTTATTTTGATCAA CAGGGCTGGTGAAG CAA CATCACCAGCCGTA TTTGAAAATTAATTA TERM 57 44835 - 44805 - R 81 -10.4 -3.15544 | opp_overlap 44805 44807 44808, overlap 44807 TTTTATTTTGATCAA CAGGGCTGGTGAAG CAA CATCACCAGCCGTA TTTGAAAATTAATTA TERM 58 44807 - 44833 + r 83 -10.8 -3.38581 | opp_overlap 44805 44807, overlap 44805 44808 TTATTTTGATCAACA GGGCTGGTGAAG CAA CATCACCAGCCG TATTTGAAAATTAAT TERM 59 44833 - 44807 - R 81 -10.8 -3.14051 | opp_overlap 44807 44805 44808, overlap 44805 TTATTTTGATCAACA GGGCTGGTGAAG CAA CATCACCAGCCG TATTTGAAAATTAAT TERM 60 44808 - 44832 + r 95 -14.3 -2.62667 | opp_overlap 44807 44805, overlap 44807 44805 TATTTTGATCAACAG GGCTGGTGAAG CAA CATCACCAGCC GTATTTGAAAATTAA rplL 45239 - 44871 - | 50S ribosomal protein L7/L12 rplJ 45803 - 45306 - | 50S ribosomal protein L10 rplA 46764 - 46069 - | 50S ribosomal protein L1 rplK 47195 - 46767 - | 50S ribosomal protein L11 nusG 47788 - 47243 - | transcription antitermination protein NusG secE 48174 - 47791 - | preprotein translocase subunit SecE TERM 61 48224 - 48211 - R 75 -3.9 -5.48787 | ATAATATAGAAAAAA TATGT TAAT ACATA AAAAATTTCATTCTT TERM 62 48519 - 48535 + r 80 -10.9 -2.65264 | overlap 48521 TTGAACTGGGGACCT CACCCTT ACC AAGGGTG TGCTCTACCTACTGA murB 50051 - 48981 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 63 49485 - 49469 - G 79 -5.1 -5.5604 | opp_overlap 49469 CTAATGAAGAAAAAA GAATTGG ACG CCATTTC TTTGACAGCTTTATC TERM 64 50247 - 50269 + G 73 -4.3 -5.00616 | opp_overlap 50267, overlap 50251 ATACAGTGTTCTTTT GAATTTTTT CCGCC GAAAAATTC TTTTTTAGAAGAAAA metF 50166 - 51044 + | 5,10-methylenetetrahydrofolate reductase argE 52201 - 51056 - | acetylornithine deacetylase TERM 65 52810 - 52797 - g 74 -2.4 -5.59502 | GAAAAAATTAAAAAA GCAA ATCTGA TTGC ATTACCTGGGTGTTA argC 52362 - 53366 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 53387 - 54160 + | acetylglutamate kinase TERM 66 55327 - 55343 + G 72 -5.1 -4.82518 | opp_overlap 55330, overlap 55330 GATAAAGTGTATAAG CAATCTG ATG CAGATGG TTTTATTCGTCTTTT argG 54190 - 55401 + | argininosuccinate synthase TERM 67 56341 - 56327 - g 81 -2.1 -5.93809 | GCCTCAGAAAAAAAA TCCAG ATGCA CTAGA ACTTATTCGAGCCAA argH 55473 - 56852 + | argininosuccinate lyase yibN 56934 - 57368 + | hypothetical protein secB 57475 - 57903 + | preprotein translocase subunit SecB cysE 58005 - 58829 + | serine acetyltransferase rpoD 60773 - 58935 - | RNA polymerase sigma factor RpoD TERM 68 59850 - 59874 + g 93 -4.5 -6.10489 | opp_overlap 59864 AAGATAGTTAATTTT TTTTATTGGAA AAA TTTTAATAAAA TTTTTTTTTGGCATT dnaG 62674 - 60941 - | DNA primase TERM 69 62701 - 62722 + r 95 -7.3 -6.11392 | overlap 62702 ATTATAGAATTCGTT TCCGTTCTT GAAC AAGAACGGC TTTTTTTATTTATTT TERM 70 62702 - 62721 + r 87 -10.8 -4.21345 | overlap 62701 TTATAGAATTCGTTT CCGTTCTT GAAC AAGAACGG CTTTTTTTATTTATT rpsU 62970 - 62755 - | 30S ribosomal protein S21 TERM 71 63053 - 63070 + H 78 -3.5 -5.9362 | CTATATCAATTAGTG TGATATT GTAA AGTATCA TTTTTTTATGTTTTA TERM 72 63119 - 63142 + H 72 -8.4 -3.02966 | opp_overlap 63114, overlap 63115 63117 63118 ATTTAGATTAGTTCA TTTAAAATGA ATGT TCATTTTAAA ATTTATGTCAAATAT ygjD 63204 - 64214 + | O-sialoglycoprotein endopeptidase ribB 64839 - 64192 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 73 64346 - 64374 + g 71 -7.5 -3.65656 | opp_overlap 64329 64346 64347, overlap 64347 CCGGCTGGTTTGAAA CCTGCTAGAGAAA CAA TTTCTATAGCAGC TTCTGTGTGTCCTGG TERM 74 64374 - 64346 - G 71 -7.5 -3.53012 | opp_overlap 64346 64347, overlap 64329 64347 CCGGCTGGTTTGAAA CCTGCTAGAGAAA CAA TTTCTATAGCAGC TTCTGTGTGTCCTGG TERM 75 64347 - 64373 + g 86 -11 -2.78912 | opp_overlap 64329 64346 64347, overlap 64346 CGGCTGGTTTGAAAC CTGCTAGAGAAA CAA TTTCTATAGCAG CTTCTGTGTGTCCTG TERM 76 64373 - 64347 - G 84 -11 -2.71712 | opp_overlap 64347 64346, overlap 64329 64346 CGGCTGGTTTGAAAC CTGCTAGAGAAA CAA TTTCTATAGCAG CTTCTGTGTGTCCTG yb3052 66058 - 65111 - | kinase TERM 77 66227 - 66244 + H 78 -5.7 -5.32396 | TAAAAAATTCTATTT TTCTATT ATAG AATAGAA TTTTGTTTTTAGTAT TERM 78 66869 - 66882 + G 100 -5.3 -6.11644 | opp_overlap 66869, overlap 66866 CAAGTTTTGTATGAA TGCAA TGCA TTGCA TTTTTTTTTCCCTGA TERM 79 67163 - 67179 + G 90 -3.7 -5.99318 | opp_overlap 67163 67166, overlap 67164 TATATTCGAGACATA GCAGTAT TAA ATACTGG TTTTTATTTTTTTTT TERM 80 67164 - 67178 + G 75 -7.2 -4.11355 | opp_overlap 67163 67166, overlap 67163 ATATTCGAGACATAG CAGTAT TAA ATACTG GTTTTTATTTTTTTT cca 66272 - 67516 + | tRNA CCA-pyrophosphorylase bacA 68339 - 67542 - | bacitracin resistance protein TERM 81 67699 - 67683 - G 70 -2.3 -5.5074 | opp_overlap 67683, overlap 67671 GAATCCAATAAAAAA TATTGGA AGA TCTAATA TTTTAAAATTATGCA TERM 82 68103 - 68120 + g 72 -5.7 -4.49937 | opp_overlap 68110, overlap 68104 68114 TTTTGTATTTGTTTT TTTAACA TTTA TGTTAAA TTTTAATATTCTTAA TERM 83 68121 - 68137 + g 74 -2.4 -5.60993 | opp_overlap 68121 68129, overlap 68104 68114 AACATTTATGTTAAA TTTTAA TATTC TTAAAA TTTTTTTATGAAAAA TERM 84 68336 - 68321 - G 70 -6.2 -4.21393 | opp_overlap 68320 TAATAGAAACAATAA CTTGAT GTAG ATCAAG CATATATTTTCCTGT TERM 85 68389 - 68409 + r 74 -5.4 -5.0916 | opp_overlap 68384 68389 ATATATAAATTAAAA CGGTACTA AATAA TAGCACCG TTTTTGTATTAAAAA TERM 86 68409 - 68389 - R 78 -7.6 -4.66057 | opp_overlap 68389, overlap 68384 ATATATAAATTAAAA CGGTACTA AATAA TAGCACCG TTTTTGTATTAAAAA crr 68910 - 68425 - | glucose-specific PTS system component TERM 87 68900 - 68868 - G 81 -7.4 -4.6526 | gap 1 ATAAAGGTGCAAAAA TTTCTG-TTTTTTTA CTGT TAAAAAAATCAGAAA AGAAACTCATTTTTT ptsI 70675 - 68960 - | phosphoenolpyruvate-protein phosphotransferase ptsH 71081 - 70824 - | phosphocarrier protein HPr TERM 88 71212 - 71224 + r 82 -4.9 -5.71983 | opp_overlap 71212 TATATTAAATAAATT CTATT TTT AATAG TTTTTTTATAGTTCA cysK 72177 - 71230 - | cysteine synthase A TERM 89 71969 - 71985 + g 78 -7.3 -4.52505 | ATTCCTGTATTACCA CTAGTCG CCT CGATTAG TTTTACATTTTTATT TERM 90 73103 - 73114 + G 82 -4.4 -5.60993 | overlap 73099 ATTAATATTTTCATG TCAC GGAT GTGA TTTTTTTGTAAAAAC lig 72432 - 74459 + | DNA ligase (NAD+) TERM 91 75495 - 75483 - g 70 -4.9 -4.76213 | AGAAAGGTAATAAAA TTTCT AAA AGAAA AAATGCTATAAATAT gltX 74771 - 76174 + | glutamyl-tRNA synthetase fliE 76810 - 76514 - | flagellar hook-basal body complex protein FliE TERM 92 78594 - 78582 - g 83 -4.9 -5.74122 | overlap 78574 TATTATAGAAAAAAA TACTT TTC AAGTA GATCTTCAAAATAAT fliF 77074 - 78711 + | flagellar MS-ring protein fliG 78708 - 79703 + | flagellar motor switch protein FliG fliH 79696 - 80358 + | flagellar assembly protein FliH TERM 93 80568 - 80587 + GF 79 -3.6 -5.66338 | overlap 80570 AATGCTGAAGTGATA GGTTTTTC GGGA GAAAAAAC TTTTTTATTATCTTT TERM 94 80687 - 80660 - gf 79 -9.4 -3.25312 | opp_overlap 80652 80660, overlap 80652 80662 80666 AAAAATAGCTAGCAA TAGCAATTTTTT TATA AAAAAATTGCCA TTAGGTATGGAATTA TERM 95 80685 - 80662 - gf 83 -9.8 -3.17608 | opp_overlap 80652 80660, overlap 80652 80660 80666 AAATAGCTAGCAATA GCAATTTTTT TATA AAAAAATTGC CATTAGGTATGGAAT TERM 96 81115 - 81099 - gf 91 -7.3 -5.3104 | opp_overlap 81099 TTATTAAAAATAAAA GCAGCAT CTT ATGCTAC TAATATTGCAGAATA TERM 97 81165 - 81143 - gf 71 -4.3 -4.84761 | opp_overlap 81143, overlap 81129 ATATTTTTATAAAAA TAATAAACA TGTAT TGCTTATTA TGGATTCATTGACTC fliI 80316 - 81719 + | flagellum-specific ATP synthase fliJ 81749 - 82186 + | flagellar FliJ protein TERM 98 82282 - 82319 + G 74 -6.7 -4.42386 | gap 1, opp_overlap 82294 82318, overlap 82294 ATTATTAATTCATCA TATTTATTAAAATCTACT TTT AGTAGAT-TTAATCAATA TTTTCTAAATAAAAA TERM 99 82308 - 82294 - g 76 -7.2 -4.29738 | opp_overlap 82282 82294 TCATATTTATTAAAA TCTACT TTT AGTAGA TTTAATCAATATTTT TERM 100 82294 - 82308 + G 71 -7.2 -3.81154 | opp_overlap 82294, overlap 82282 TCATATTTATTAAAA TCTACT TTT AGTAGA TTTAATCAATATTTT yba1 82195 - 82533 + | hypothetical protein TERM 101 83234 - 83214 - g 71 -4.2 -5.13521 | opp_overlap 83225, overlap 83225 83227 AAACCAGTTAAAAAA TTATAAAA ACTTA TTTTATAA AAATATTTATTACAC fliK 82624 - 83331 + | flagellar hook-length control protein TERM 102 84070 - 84060 - g 74 -2.6 -5.72616 | overlap 84069 ATGTATAGAAAAAAA TATT GAG AATA AAGTATCTTTAAATG fliM 83392 - 84339 + | flagellar motor switch protein FliM fliN 84332 - 84733 + | flagellar motor switch protein FliN fliP 84745 - 85884 + | type III secretion system protein TERM 103 85885 - 85899 + F 78 -4.4 -5.80003 | opp_overlap 85885 AGTTTTAATACATAA TATTTT TAT AAAATA TTTTTTGTTTATTAC fliQ 85956 - 86225 + | flagellar biosynthetic protein FliQ TERM 104 86284 - 86298 + G 90 -3.6 -6.10295 | TTTTTTTTGGCCTAT GATAAG AGT TTTATC TTTTTTTTCTGTTGC fliR 86225 - 87001 + | flagellar biosynthetic protein FliR TERM 105 87090 - 87124 + T 95 -10.4 -4.8048 | opp_overlap 87091 87095, overlap 87091 AAAAAATTTCTACAA ATAAAGTATAATTTTT TAA AAAAATTATACTTTAA TTTTTAGTGTAAAAA TERM 106 87091 - 87123 + T 100 -13.9 -3.47806 | opp_overlap 87091 87095, overlap 87090 AAAAATTTCTACAAA TAAAGTATAATTTTT TAA AAAAATTATACTTTA ATTTTTAGTGTAAAA TERM 107 87123 - 87091 - T 100 -13.9 -3.92745 | opp_overlap 87090 87091, overlap 87095 AAAAATTTCTACAAA TAAAGTATAATTTTT TAA AAAAATTATACTTTA ATTTTTAGTGTAAAA TERM 108 87119 - 87095 - T 91 -10.3 -4.55697 | opp_overlap 87091 87090, overlap 87091 ATTTCTACAAATAAA GTATAATTTTT TAA AAAAATTATAC TTTAATTTTTAGTGT TERM 109 87134 - 87156 + T 80 -8 -4.37737 | overlap 87128 CTTTAATTTTTAGTG TAAAAAAATA GAT TATTTTTTTA TTTAATTTTTCCTTC rpmG 87321 - 87154 - | 50S ribosomal protein L33 rpmB 87559 - 87332 - | 50S ribosomal protein L28 TERM 110 87845 - 87863 + H 78 -6.2 -5.24799 | opp_overlap 87849 87853, overlap 87834 87853 GATGTTAACTATTAG TTAATTTA TTA TAAATTAA TTTTTATATTTATAA TERM 111 88018 - 88028 + G 75 -5.4 -4.87786 | ATATATTTTTAATTT TACG AAT CGTA TTTTTATAGGATTGA TERM 112 88487 - 88477 - g 91 -2.6 -6.34424 | TTTTGAAAAAAAAAA TATT TTA AATA AATCAACTATTATTA TERM 113 88523 - 88507 - g 73 -5.3 -4.7871 | overlap 88497 AACTATTATTAAAAA TTTTAAT AAA ATTAAAA AAATATATAGTTTTT TERM 114 89193 - 89183 - g 87 -2.6 -6.25578 | ATCAAACAAAAAAAA TTTT ATA AAAA AGTAATTCATCCAGA TERM 115 90270 - 90260 - g 87 -2.6 -6.17033 | AAAAAAAATAAAAAA TTAT CGA ATAA TAAAAATATTTTTGG TERM 116 90504 - 90520 + G 76 -3.8 -5.43514 | opp_overlap 90504 GAAGTAACAACATAT TAAAGT ATATA ACTTTA TTTTTTCCTTATTTT ytfN 87905 - 90817 + | hypothetical protein ppa 91381 - 90833 - | inorganic pyrophosphatase TERM 117 90998 - 91016 + g 80 -7.6 -4.62163 | CTTTTTTAACAATTC TGATATAT CTG ATATATCA TTTATGTTTTTATAT TERM 118 91847 - 91835 - g 72 -4.9 -4.93316 | TAAGAACATTAAAAA TATGT TAG ACATA GCTATTAATATTTCA pmbA 91575 - 92915 + | PmbA protein TERM 119 92970 - 92945 - T 80 -10.7 -2.76509 | opp_overlap 92949, overlap 92944 92949 TTTTAAATAATGAAC TAAAGGTAATA AATT TATTACCTTTA TAAAAATATTTCTAG TERM 120 92949 - 92966 + T 71 -7.1 -3.89903 | opp_overlap 92949 92945 92944 AAATAATGAACTAAA GGTAATA AATT TATTACC TTTATAAAAATATTT TERM 121 92966 - 92949 - T 73 -7.1 -4.05045 | opp_overlap 92949, overlap 92945 92944 AAATAATGAACTAAA GGTAATA AATT TATTACC TTTATAAAAATATTT yraL 94241 - 93393 - | hypothetical protein TERM 122 93977 - 93997 + g 74 -2.5 -5.63857 | overlap 93978 TAATAATCGGTGTGC CTGCATTAG AAA CTAAAGCAA TTTTTTTCCCTTTTT TERM 123 94310 - 94322 + H 78 -3.5 -5.89921 | opp_overlap 94310 CATTTTATTTAAATA TAAAA TTT TTTTA TTTTTTTATTCTAAT TERM 124 94453 - 94440 - g 74 -2.4 -5.64873 | opp_overlap 94440 GGTAATAATAAAAAA GAAG TACTAG CTTC TTTATATAAAGGTGT fabB 94380 - 95600 + | 3-oxoacyl-[acyl-carrier-protein] synthase I TERM 125 95613 - 95595 - f 75 -4 -5.63374 | overlap 95608 CTAATAGTAAAAAAA TATTAATA TAC TATCAATA ATTGAAATATTTTTT TERM 126 95692 - 95722 + F 95 -7.9 -5.66229 | opp_overlap 95692 TATTTTTTAAAAAAA TCATTTTAATATT TTTTT GATATTAAAATGA TTTTTTATTCTTAAT TERM 127 95722 - 95692 - f 87 -7.2 -5.41143 | opp_overlap 95692 TATTTTTTAAAAAAA TCATTTTAATAT TTTTTTG ATATTAAAATGA TTTTTTATTCTTAAT talA 95840 - 96790 + | transaldolase B TERM 128 97166 - 97152 - g 86 -10 -3.59738 | opp_overlap 97154, overlap 97144 CAGGACATCCTGAAA CAGGTG AAA CACCTG GTGTAGAAACAACTA TERM 129 97236 - 97248 + G 70 -6.3 -4.25256 | opp_overlap 97236 TGGCTATTGCAGAAA GAACT TTA AGTTC TTATTTTAATCGACC tktB 96845 - 98842 + | transketolase TERM 130 98868 - 98888 + F 75 -8.3 -3.79687 | opp_overlap 98865, overlap 98866 AATTTTAAATATTTA TGGGGCT CAATTAT AGCCCCA TCTTTTATGAAAAAT dapE 98947 - 100074 + | succinyl-diaminopimelate desuccinylase TERM 131 100093 - 100113 + T 84 -7.1 -5.28778 | opp_overlap 100092 TTCAACAAAAATATT TATAAAAAA ACA TTTTTTATA TTTTTTATAAATGAT TERM 132 100157 - 100125 - T 83 -10 -3.87373 | opp_overlap 100124 100125 TATATTTTTTATAAA TGATGCAGAATATC ATAGA GATAGTCTGCACCA ATTATTACGCATGAA dapA 101348 - 100464 - | dihydrodipicolinate synthase TERM 133 100623 - 100646 + g 72 -6 -4.58085 | GGGTTCTATGAACAG CGCTTCATGT AGTA ACATTAGGCG TTTATTTATAGATCT TERM 134 100823 - 100810 - G 76 -3.9 -5.5112 | opp_overlap 100810 100807 100803, overlap 100803 CTGATTAATAAAAAA TTAGT TTTA ACTAA TTCTTTTATTTTATG aroC 102988 - 101924 - | chorismate synthase yb2331 103284 - 103844 + | hypothetical protein hisG 104169 - 105068 + | ATP phosphoribosyltransferase hisD 105077 - 106384 + | histidinol dehydrogenase hisC 106381 - 107487 + | histidinol-phosphate aminotransferase hisB 107477 - 108538 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 108538 - 109128 + | imidazole glycerol phosphate synthase subunit HisH hisA 109133 - 109873 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisF 109852 - 110628 + | imidazole glycerol phosphate synthase subunit HisF TERM 135 110652 - 110634 - g 78 -4.6 -5.42862 | opp_overlap 110637, overlap 110637 AGAGTGTTAAAAAAA CATGATTT ATT AAATCTTG ATTGGACAAAAACTA hisI 110622 - 111269 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein gnd 111628 - 113034 + | 6-phosphogluconate dehydrogenase dcd 113236 - 113817 + | deoxycytidine triphosphate deaminase TERM 136 113831 - 113843 + F 76 -4.9 -5.46129 | opp_overlap 113831 AAAGTTTTTACGTAA TATAC TAT GTATA TTTTTTAATTTCTTA metG 113965 - 115608 + | methionyl-tRNA synthetase mesJ 116978 - 115656 - | cell cycle protein MesJ ribE 117204 - 117830 + | riboflavin synthase subunit alpha rnfA 117867 - 118448 + | hypothetical protein rnfB 118451 - 118954 + | ferredoxin II TERM 137 118971 - 118959 - f 72 -3.5 -5.66229 | overlap 118969 ATGAAGAATAAAAAA TTATT AGA AATAA AAAAAATTTTTAAAA TERM 138 118988 - 118978 - f 81 -2.6 -6.28967 | opp_overlap 118978, overlap 118969 TAGAAATAAAAAAAA TTTT TAA AAAA TTCTTTTCTATAAAA rnfC 119117 - 120538 + | membrane protein TERM 139 120699 - 120709 + G 95 -4 -6.32216 | TTTTGGTATTGGTAC TTTG ATA CAAA TTTTTTTTTCTATAT ydgO 120586 - 121629 + | hypothetical protein TERM 140 121790 - 121764 - f 95 -3.9 -6.77747 | opp_overlap 121772, overlap 121779 CAAGAAAAAAAAAAA TATTAAAAGAA GTTAT TCCTTCTAATA TATATCATACATTTG TERM 141 122218 - 122187 - gf 74 -6.8 -4.29432 | gap 1, opp_overlap 122187 122186 CAAATTCTATCAAAA GAACGGT-TGTTTTT ATT AAAAAGATACCGTTC ATATTTGATTTTTTA rnfG 121778 - 122272 + | nitrogen fixation protein TERM 142 122835 - 122854 + GF 76 -6.6 -4.52803 | TTTCTTATATTAGGC TTCTTAAT TGCC ATTAAGAA TTTTATAGATTTATA TERM 143 122919 - 122894 - gf 71 -2.8 -5.38321 | gap 1, opp_overlap 122898 AAATACTATAAAAAA TATT-GAACAA TGTTC TTGTTCTAATA AAATAAAGTAACAAT ydgQ 122247 - 122930 + | SoxR-reducing system protein RsxE nth 122941 - 123573 + | endonuclease III TERM 144 124188 - 124175 - g 87 -2.5 -6.17184 | opp_overlap 124176, overlap 124176 AGGACGAAAAAAAAA TTATT TTTC AATAA AAAAATATCAATTGT TERM 145 124830 - 124867 + G 93 -3.1 -6.35605 | gap 1, opp_overlap 124839, overlap 124840 ATAAAAATTTTACAG GAAAACAAGTTTTATTAA TTT TTAATAAA-TTTGTTTTA TTTTTTTTTGTCTTA TERM 146 124840 - 124858 + G 82 -6.2 -5.1285 | opp_overlap 124839, overlap 124830 TACAGGAAAACAAGT TTTATTAA TTT TTAATAAA TTTGTTTTATTTTTT priA 123596 - 125776 + | primosomal protein N' tyrS 125936 - 127204 + | tyrosyl-tRNA synthetase ydiC 127604 - 127212 - | hypothetical protein TERM 147 127659 - 127647 - H 81 -3.5 -6.23317 | opp_overlap 127647 ATAAAAATAAAAAAA TATTT AAA AAATA CTTGTATTGTACAGA TERM 148 127688 - 127706 + H 71 -7.6 -3.77278 | opp_overlap 127692, overlap 127683 127692 GAAATATTTATGTTT TAAACAAT ATT ATTGTTTA TTAATTATTTTTATA yb1688 127828 - 128910 + | putative inner membrane protein aroH 129262 - 130308 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 149 130315 - 130340 + F 100 -8.4 -5.30575 | opp_overlap 130313 CGTTTTTAATTCACA TGCTAGTCAA AAACAC TTGGCTAGCA TTTTTTCAATTTTTA TERM 150 130919 - 130901 - g 71 -7.6 -3.63761 | overlap 130899 GAAGCTAGAGAAATA TTTCAAAA ATG TTTTGAAA AATATAAAGTTTCTT TERM 151 132294 - 132276 - g 91 -6.8 -5.42259 | overlap 132278 GCAGTTCTAAAAAAA TATCTGTT CGC AACAGACA AGGTCATAACTTTGG TERM 152 132292 - 132278 - g 76 -7.2 -4.35085 | overlap 132276 AGTTCTAAAAAAATA TCTGTT CGC AACAGA CAAGGTCATAACTTT thrS 130460 - 132388 + | threonyl-tRNA synthetase infC 132392 - 132931 + | translation initiation factor IF-3 rpmI 133018 - 133215 + | 50S ribosomal protein L35 rplT 133258 - 133614 + | 50S ribosomal protein L20 TERM 153 133661 - 133639 - f 85 -9.9 -3.97043 | opp_overlap 133641 TTTAATACATAATAA GAGGGGAAA ATTAA TCTCCCCTC CATTCTAAAAATATT TERM 154 133753 - 133737 - f 77 -8 -4.21933 | opp_overlap 133737, overlap 133752 TTAATTTTAAAATAA GCTTCC TGTAT GGAAGC TTTTTAGTATGTTTA TERM 155 133737 - 133753 + F 84 -8 -4.90217 | opp_overlap 133737 133752 TTAATTTTAAAATAA GCTTCC TGTAT GGAAGC TTTTTAGTATGTTTA TERM 156 134410 - 134385 - g 75 -7.1 -4.07687 | gap 1, opp_overlap 134390, overlap 134388 134390 ATTTTCCCCGGAAAA GTA-TATCGTAA TGA TTACGATATTAC ACATACACCTATGTT TERM 157 134406 - 134388 - g 76 -9 -3.08032 | opp_overlap 134390, overlap 134385 134390 TTCCCCGGAAAAGTA TATCGTAA TGA TTACGATA TTACACATACACCTA TERM 158 134614 - 134643 + G 72 -6.6 -4.11371 | opp_overlap 134614 134616, overlap 134616 GAAAATCCTTAGAAA TATTAGGATGTG GCATGG TACATCCTAATG TTTTAAAAAATGTTA pheS 133809 - 134798 + | phenylalanyl-tRNA synthetase subunit alpha pheT 134808 - 137195 + | phenylalanyl-tRNA synthetase beta chain himA 137200 - 137508 + | integration host factor alpha-subunit TERM 159 137511 - 137499 - f 73 -4.9 -5.18158 | opp_overlap 137499 137503, overlap 137502 137503 AATAAAAAAAAATAA CAATT TCT AATTG TATTAGAATAATTTT TERM 160 138380 - 138396 + G 84 -6.7 -5.05601 | TGATAGCCAAGATTT TATTAGT GAT ACTAATA TTTTTATATATCCTG queA 137550 - 138623 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 138664 - 139776 + | queuine tRNA-ribosyltransferase yajC 139801 - 140136 + | hypothetical protein glyS 142260 - 140188 - | glycyl-tRNA synthetase beta chain TERM 161 141280 - 141268 - GT 100 -6.3 -6.06723 | GTTCTTAAAAAAAAA TTCAG CAT CTGAA AGTCGTGCATGCATT glyQ 143173 - 142235 - | glycyl-tRNA synthetase subunit alpha TERM 162 143330 - 143319 - H 72 -3 -5.75342 | opp_overlap 143319 143322, overlap 143322 TTTCTTTAAAAAAAA GATT AAGA AATC TTATATTAAAAGAAT nfo 143868 - 144713 + | endonuclease IV rplY 144748 - 145035 + | 50S ribosomal protein L25 yabI 145875 - 145105 - | hypothetical protein TERM 163 145935 - 145945 + H 72 -2.6 -5.75342 | overlap 145926 TTTACGTAAATATTT TATA CTT TATA TTTTTTTTAAAACAA TERM 164 146974 - 146948 - g 71 -8.1 -3.22113 | overlap 146947 ATTGTTTGATAAAAC CTTCTGTGATT CTTAC AAACACAGAAG CAAAGAAAAAGATTT surA 146062 - 147354 + | survival protein SurA precursor ksgA 147408 - 148229 + | dimethyladenosine transferase TERM 165 148213 - 148243 + F 76 -7.2 -4.45261 | opp_overlap 148208 148212 148223, overlap 148223 AAAAATCGAATAATC TTTTAAAAATTAAT TAA ATTATTTTTTAAAA TTTTACATTTATTTA TERM 166 148746 - 148714 - g 80 -6.5 -4.82901 | opp_overlap 148706 148722 148724, overlap 148737 CTTGTCTCATAAAAA TTATGCTTTATTTCT AAA AGAAATATATCATAA TAATATAGATTTTTG apaH 148274 - 149098 + | diadenosine tetraphosphatase folA 149610 - 149125 - | dihydrofolate reductase TERM 167 149670 - 149641 - R 95 -11.1 -4.03413 | opp_overlap 149640 149648, overlap 149648 ATCCCTTCATATAAA TTATAAATATGTT TCAC AACATATTTATAA AAATTGTTTGTTATT TERM 168 149697 - 149723 + r 74 -6.8 -4.51477 | opp_overlap 149700, overlap 149711 149713 TATTTAAGTATCAGT CAATTATTTTTT CGT ATAAAATAATTG TATTTTTTTATGTAT carB 152939 - 149700 - | carbamoyl phosphate synthase large subunit TERM 169 151245 - 151255 + g 82 -2.6 -6.04419 | overlap 151229 ATTAGGACCACCACC TAAT ATG ATTA TTTTTTTATTATTTT carA 154116 - 152953 - | carbamoyl phosphate synthase small subunit TERM 170 153780 - 153790 + g 71 -4 -5.10933 | CAATATCCGATATTG CAAT AAT ATTG TTTTCTTTTAAATAG dapB 155135 - 154326 - | dihydrodipicolinate reductase TERM 171 154795 - 154807 + g 70 -4.9 -4.67697 | TTTTGAGAATATGAT TTGAT AAT ATCAA TTTCTTCTTTTGAAA lytB 156098 - 155139 - | LytB protein lspA 156645 - 156163 - | lipoprotein signal peptidase ileS 159467 - 156645 - | isoleucyl-tRNA synthetase ribF 160425 - 159484 - | FMN adenylyltransferase TERM 172 159520 - 159541 + g 73 -3.1 -5.43514 | opp_overlap 159525 ATATTTTTGAACTAT TAAAATATC TTGT GATATTTGA TTTTTTAATTCTTTT TERM 173 160283 - 160272 - G 71 -4.4 -4.86731 | opp_overlap 160272 GGGGTTCAAATAAAA CAAC TATA GTTG ATAATTTATATTTTT TERM 174 160519 - 160533 + H 75 -4.4 -5.52986 | overlap 160518 AATATTTCTTAGTAT TTTTTT AAA AAAAAA TTTTTTTAATGAAAT TERM 175 160671 - 160655 - g 79 -6.6 -4.66537 | opp_overlap 160654 TTGGCCAATATAAAA GCATCT AAAAA AGATGC ATTAACTTCTGAAAA rpsT 160640 - 160909 + | 30S ribosomal protein S20 TERM 176 160914 - 160957 + T 72 -7.8 -3.45788 | gap 1, opp_overlap 160898 160911 160907 160924, overlap 160916 160921 CTAAAATATAATTTT TTTTA-GAGTATTGCCTCTAA TTT TTAGAAGCAATACTTATAGAA TCTTATCTTGTCAGA TERM 177 160921 - 160949 + T 95 -11.9 -3.37474 | opp_overlap 160911 160907 160924, overlap 160916 160914 ATAATTTTTTTTAGA GTATTGCCTCTAA TTT TTAGAAGCAATAC TTATAGAATCTTATC TERM 178 160946 - 160924 - T 78 -10 -2.62263 | opp_overlap 160916 160921 160914, overlap 160911 160907 ATTTTTTTTAGAGTA TTGCCTCTAA TTT TTAGAAGCAA TACTTATAGAATCTT dnaJ 162093 - 160960 - | DnaJ protein TERM 179 162163 - 162121 - R 72 -6.4 -4.66609 | gap 1, opp_overlap 162124 162126, overlap 162124 162127 TACCTGATTTAAAAA TAATTA-CACGGGCGCAGA AGTTTA TCTACGCCCGTGCTAGTTT AAAGTCTATAATAAT TERM 180 162124 - 162160 + r 74 -8.1 -3.65693 | gap 1, opp_overlap 162124 162121 162127, overlap 162126 CTGATTTAAAAATAA TTA-CACGGGCGCAGA AGTTTA TCTACGCCCGTGCTAG TTTAAAGTCTATAAT TERM 181 162159 - 162124 - R 100 -11.9 -4.44608 | opp_overlap 162124 162126, overlap 162121 162127 CTGATTTAAAAATAA TTACACGGGCGCAGA AGTTTA TCTACGCCCGTGCTA GTTTAAAGTCTATAA TERM 182 162126 - 162157 + r 78 -10.1 -2.93853 | opp_overlap 162124 162121 162127, overlap 162124 GATTTAAAAATAATT ACACGGGCGCAGA AGTTTA TCTACGCCCGTGC TAGTTTAAAGTCTAT TERM 183 162156 - 162127 - R 100 -15.8 -3.18327 | opp_overlap 162126 162124, overlap 162124 162121 ATTTAAAAATAATTA CACGGGCGCAGA AGTTTA TCTACGCCCGTG CTAGTTTAAAGTCTA dnaK 164119 - 162206 - | DnaK protein TERM 184 163453 - 163476 + g 80 -3.9 -5.72622 | CAAGATGTGTATCTC CATTTGTAG CAAGAA CTTCAAATG TTTTTTCTTTATCCA TERM 185 164313 - 164294 - H 80 -2.2 -6.26417 | overlap 164298 164310 CAGTAGAAAAAAAAA TAAAGTTT TACC AAACTATA ACTGAAAATTATAAG nuoA 164454 - 164858 + | NADH dehydrogenase I chain A nuoB 164892 - 165566 + | NADH dehydrogenase subunit B TERM 186 165750 - 165764 + G 80 -5.8 -5.13722 | AATAATTTATTTGAT TTCTTT GGT AAAGAA TTTTGTTTTCATCAA TERM 187 166258 - 166242 - g 73 -8.1 -3.33711 | opp_overlap 166242 GATTTAGAAATGGAA GGTTTAA AAT TTAAACC TGAGTTATGGGGTAT nuoCD 165657 - 167459 + | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 188 167643 - 167657 + G 73 -8.6 -3.02144 | opp_overlap 167633, overlap 167633 AGCTATTTATGCTAT TGCAGA AAT TCTGCA TATTAACCCCAGTGA nuoE 167482 - 167970 + | NADH dehydrogenase subunit E TERM 189 168378 - 168396 + G 72 -6.8 -4.09243 | opp_overlap 168378 TTTTTAAGAGGAGAA TATGTTCA AGC TGAGCATA TTTTAAAACAATCTA nuoF 167967 - 169301 + | NADH dehydrogenase I chain F TERM 190 169331 - 169345 + F 78 -4.4 -5.72616 | opp_overlap 169329 169331, overlap 169320 169316 TTTTTATAGAAAATA TTTATT TTA AATAAA TTTTTTTATATAAAT TERM 191 170183 - 170194 + G 70 -5.8 -4.28254 | TCATTATTTAATATG CGAC CTTG GTCG TTTTGGGTATTCACA TERM 192 171919 - 171905 - g 72 -5 -4.92791 | opp_overlap 171905 171912 TATAATACAAGAAAA TACTCC TTT AGAGTA TGCTTTAATTGGTTT TERM 193 172063 - 172044 - g 70 -5 -4.75174 | overlap 172048 TATTTAACTGAAAAA CAAATAGG TTTG CCTATTGG AAGAAAAGGATTTCC TERM 194 172059 - 172048 - g 71 -4.4 -4.91473 | overlap 172044 TAACTGAAAAACAAA TAGG TTTG CCTA TTGGAAGAAAAGGAT nuoG 169395 - 172115 + | NADH dehydrogenase subunit G nuoH 172127 - 173095 + | NADH dehydrogenase subunit H nuoI 173120 - 173662 + | NADH dehydrogenase subunit I nuoJ 173672 - 174184 + | NADH dehydrogenase I chain J nuoK 174215 - 174517 + | NADH dehydrogenase I chain K TERM 195 175096 - 175116 + G 78 -8.5 -3.83864 | opp_overlap 175095 AGAGAATTTAATAGT TTTAATTTC CAA GAAATTAAA TTCTTATCAAGTTTT TERM 196 175128 - 175145 + G 70 -2.1 -5.38549 | TAAATTCTTATCAAG TTTTTTA AATG TAGAAAA TTTTTATTATTTAGA nuoL 174514 - 176358 + | NADH dehydrogenase I chain L TERM 197 176956 - 176946 - g 80 -4 -5.61824 | TAAAACTGAAAAAAA GAAA AAT TTTC TAGCTGCTAATAAGT nuoM 176455 - 177972 + | NADH dehydrogenase I chain M nuoN 178030 - 179439 + | NADH dehydrogenase I chain N TERM 198 179492 - 179477 - f 72 -3.4 -5.6473 | overlap 179469 179487 ATAATACTAAAAAAA TTTTTA CTAA TAAAAA AGGTATTTTTAGTGG TERM 199 179527 - 179539 + F 80 -4.9 -5.50499 | TTTTTTATATGCTAT TACTT TTG AAGTA TTTTTTTCGATCTAA TERM 200 179619 - 179591 - f 86 -6.3 -5.76633 | opp_overlap 179591 GTATATACAAAAAAA TAAAAAATAATTT TTA AAATTTTTTTTTA TTATAATTTTTATAT TERM 201 180001 - 179976 - f 84 -7.1 -5.26316 | gap 1, opp_overlap 179975 179976 179979, overlap 179979 CTAGTTCATAAAAAA CAG-TATTAGAA TAT TTCTAATATCTG ATTTTTTAGAATAAG TERM 202 180434 - 180421 - f 73 -2.5 -5.9667 | opp_overlap 180392 AAAAATATAAAAAAA TAAAA AATT TTTTA CCATAACGTATTATA TERM 203 180840 - 180860 + G 75 -8.4 -3.41416 | overlap 180838 180827 TAGAATTAATGGGTT TGTTCTTC ATGAA GAAGAACA TATTGATTCTTTTCA TERM 204 181318 - 181328 + G 72 -6.8 -4.12475 | GTACCATTATCGAGT GCAG CTA CTGC TTTATCTACTCTATA folC 180565 - 181800 + | dihydrofolate synthase prsA 183326 - 182379 - | ribose-phosphate pyrophosphokinase ychB 184330 - 183446 - | hypothetical protein TERM 205 183587 - 183574 - G 70 -3.1 -5.33866 | CAAATTCAGAAAAAA CACAA GATC CTGTG CCAGTCATGCGTGAA TERM 206 184490 - 184504 + H 72 -4.4 -5.40474 | opp_overlap 184490 184494 ATACATTGTTTAATA TTAATT AAA AATTAA TTTTTTTAAAACACT TERM 207 185196 - 185180 - g 75 -5.2 -4.87318 | opp_overlap 185180 CCTAAAACTGAAAAA GAAGAA ATTAA TTCTTC TGATTTAAAAATTGA prfA 184538 - 185623 + | peptide chain release factor 1 hemK 185620 - 186453 + | HemK protein ychA 186613 - 187422 + | putative transcriptional regulator nadE 188236 - 187430 - | NAD synthetase ackA 188320 - 189537 + | acetate kinase TERM 208 190603 - 190577 - g 100 -7.4 -5.71712 | opp_overlap 190548, overlap 190548 190579 TTTTACAGAAAAAAA TACAATAGAGAT TTT ATCTCAATTGCA AAACTTTAACTTTGA TERM 209 190601 - 190579 - g 80 -7.8 -4.50122 | opp_overlap 190548, overlap 190548 190577 TTACAGAAAAAAATA CAATAGAGAT TTT ATCTCAATTG CAAAACTTTAACTTT pta 189582 - 191708 + | phosphate acetyltransferase yfaE 192003 - 191740 - | hypothetical protein TERM 210 191828 - 191806 - G 80 -9.2 -3.53012 | opp_overlap 191806 191811 191822, overlap 191810 TTCTCGTTCTTTAAA TAAAGCAGCC ATA GGCTGTTTTA TTAAATAAAATACTT TERM 211 191806 - 191828 + g 91 -11.4 -3.07291 | opp_overlap 191806 191810, overlap 191811 191822 TTCTCGTTCTTTAAA TAAAGCAGCC ATA GGCTGTTTTA TTAAATAAAATACTT TERM 212 191824 - 191810 - G 70 -5.6 -4.41348 | opp_overlap 191806 191811 191822, overlap 191806 CGTTCTTTAAATAAA GCAGCC ATA GGCTGT TTTATTAAATAAAAT TERM 213 191811 - 191823 + g 93 -9.1 -4.67982 | opp_overlap 191810 191806, overlap 191806 191822 GTTCTTTAAATAAAG CAGCC ATA GGCTG TTTTATTAAATAAAA nrdB 193136 - 192006 - | ribonucleotide-diphosphate reductase subunit beta nrdA 195489 - 193204 - | ribonucleotide-diphosphate reductase subunit alpha gyrA 198054 - 195562 - | DNA gyrase subunit A TERM 214 196116 - 196139 + g 90 -3.3 -5.94597 | TTCCTGCAAATCTCG GTTTTTTAA ATTGAC TTAAAGAAC TTTTTTTTACTATTC TERM 215 196353 - 196337 - G 71 -4.5 -4.91109 | CCGCGACTAGAAAAA CATAATA TAG TATCATG CGTATTTGCTATTAC TERM 216 196974 - 196996 + g 100 -9.3 -5.25893 | opp_overlap 196971 196974 TACGTCTTATAATGA TTTCTTGTC TATGT GACAAGAAA TTTTTTAATATCTCT TERM 217 196996 - 196974 - G 77 -9.3 -2.8294 | opp_overlap 196974, overlap 196971 TACGTCTTATAATGA TTTCTTGTC TATGT GACAAGAAA TTTTTTAATATCTCT TERM 218 198584 - 198566 - g 83 -7.6 -4.76087 | TAGAGAAGAAACAAA TAAAAAAC CAA GTTTTTTA TCAAATTTTTTTAAA TERM 219 198667 - 198653 - g 78 -2.8 -5.83822 | CATATTGAAAAAAAA GGAAAA TAT TTTACC CTCTAACTATTCCAG yba2 198321 - 199037 + | hypothetical protein TERM 220 199152 - 199116 - T 100 -10.4 -5.46276 | opp_overlap 199120 199143 AATAGATATAAAAAA TAAAGCCAGCATAAAA TATTT TTTTTTGCTGACTTTA GCTCTCATTAAGAAT ahpC 199753 - 199160 - | alkyl hydroperoxide reductase TERM 221 199674 - 199694 + g 81 -7 -4.63993 | opp_overlap 199674, overlap 199687 GAATACTTTTTAAGA TCAAATTG CTCAA CAATTTGA TTGTTTTTTAAAATT TERM 222 199687 - 199697 + g 71 -4 -5.10029 | opp_overlap 199674, overlap 199674 GATCAAATTGCTCAA CAAT TTG ATTG TTTTTTAAAATTGCT ung 199831 - 200493 + | uracil-DNA glycosylase TERM 223 200481 - 200470 - T 95 -4.4 -6.71862 | opp_overlap 200464 200470 AAAACAAAAAAAAAA CCAA TTAA TTGG TTTTTGATTTAAAAA TERM 224 200482 - 200529 + T 79 -9.8 -3.23855 | gap 1, opp_overlap 200497, overlap 200464 200497 AAACCAATTAATTGG TTTTTG-ATTTAAAAATAGAAAA AAT TTTTCTATTTTTAAATGTGAAAA ATTATTTTTGAAAAA TERM 225 200497 - 200513 + T 76 -6.7 -4.70659 | opp_overlap 200497, overlap 200482 TTTTTGATTTAAAAA TAGAAAA AAT TTTTCTA TTTTTAAATGTGAAA TERM 226 200513 - 200497 - T 76 -6.7 -4.65895 | opp_overlap 200497 200482 TTTTTGATTTAAAAA TAGAAAA AAT TTTTCTA TTTTTAAATGTGAAA grpE 201135 - 200569 - | heat shock protein GrpE2 TERM 227 200709 - 200719 + g 71 -2.6 -5.47399 | CGTGAATGTCAGGAT TAAA AAC TTTA TTTTTTTGACCTTCA TERM 228 201805 - 201817 + G 82 -9.1 -3.77832 | TTGTTTCAACACCCA CCGGT TCT ACCGG TTATTCACTTTCGGC yfjB 201252 - 202130 + | hypothetical protein smpA 202263 - 202571 + | small protein A ydhD 203108 - 203434 + | hypothetical protein rnt 204243 - 203578 - | ribonuclease T TERM 229 204687 - 204669 - g 91 -6.8 -5.54907 | TTTAGAAAAGAAAAA TGCATTAC GTA ATAATGCA GGAGGTCATATAAAT sodA 204463 - 205074 + | superoxide dismutase TERM 230 205169 - 205188 + F 91 -6.6 -5.77988 | opp_overlap 205159 205169, overlap 205159 ATAATTTTTAAAAAA CATATAAT ATAT ATTATATG TTTTTTTATATCTCT TERM 231 205188 - 205169 - f 79 -6.6 -5.06103 | opp_overlap 205169 205159, overlap 205159 ATAATTTTTAAAAAA CATATAAT ATAT ATTATATG TTTTTTTATATCTCT pth 205262 - 205795 + | peptidyl-tRNA hydrolase TERM 232 206304 - 206287 - g 87 -2.7 -6.2845 | overlap 206289 AATTACAAAAAAAAA CATTGTT AAAA AACAAAG AAACACAAGAAAAAA ychF 205836 - 206924 + | translation-associated GTPase thrC 208289 - 207000 - | threonine synthase thrB 209225 - 208296 - | homoserine kinase thrA 211696 - 209246 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 233 210110 - 210125 + g 70 -4.8 -4.67234 | ATTAAATTTTTGAGT TGATTT TTTA AAATCA TTTTTCCAGTTAGAT TERM 234 210274 - 210300 + g 78 -2.4 -5.7946 | opp_overlap 210298, overlap 210298 TACTGCCAATTCCAC CTATTCCTAT TAAAAAC ATATGAATAG TTTTTTTATTAAAAA TERM 235 211159 - 211175 + g 84 -3.8 -5.86332 | opp_overlap 211159 TATTACTTTGATTAA TATTCA TGTTC TGAATA TTTTTTTTAGATTCA TERM 236 211864 - 211888 + H 80 -9.5 -3.7948 | overlap 211863 TAAATACGTAAAGTG TATTACCTAAT TAT ATTAGGTAGTA TCTTTTAATATAATT TERM 237 212149 - 212161 + H 73 -4.9 -5.10497 | opp_overlap 212149, overlap 212153 ATATTAAAAAGAACT GTTTT TTA AAAAC TTTTTTAGATGCATT TERM 238 212286 - 212300 + H 75 -4.4 -5.63857 | opp_overlap 212288, overlap 212277 212283 ATTGTGTATTTCTAA TATAAT ATT ATTATA TTTTTTTAAGTTTTT TERM 239 212789 - 212807 + G 70 -3.2 -5.31877 | overlap 212790 CGTTGATTTTATAGG TTTTTCTA TCT TAGAAAAC TTTTTTATAGTAGGT hpt 212355 - 212855 + | hypoxanthine phosphoribosyltransferase TERM 240 212903 - 212915 + T 78 -3.5 -5.88565 | opp_overlap 212893 212897, overlap 212897 ATAAGTAAATTTTAA TAATT TAA AATTA TTTTTTTGTTATCAA panC 213756 - 212899 - | pantoate-beta-alanine ligase TERM 241 213263 - 213275 + g 80 -6.3 -4.99861 | opp_overlap 213262 ATCATATAATTCAAC TCCTT TAC AAGGA TTTTTATAATTAATA TERM 242 213672 - 213686 + g 93 -4.3 -6.01187 | opp_overlap 213665 GTAAATTACCCATTG TAGGA ACTAG TCCTA TTTTTTTATTTGATT panB 214562 - 213771 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase dksA 215133 - 214678 - | DnaK suppressor protein TERM 243 215829 - 215839 + G 71 -4 -5.06414 | TAGACAAAATGAATT TTGA AGC TCAA TTTTTATTAGGAGAG truA 215390 - 216190 + | tRNA pseudouridine synthase A TERM 244 217495 - 217483 - g 70 -4.9 -4.77908 | AAAAGAAAAAAAAGA CTAAA GGA TTTAG AAGTTGCTATGATCG mrcB 216262 - 218544 + | penicillin-binding protein 1b TERM 245 218564 - 218554 - f 72 -2.6 -5.79595 | TTTTAAAATAAAAAA TAAA ATT TTTA TTCAAGAGAGATGGT secA 218774 - 221401 + | preprotein translocase subunit SecA TERM 246 221627 - 221637 + G 71 -2.6 -5.51402 | GTTGGAATTATTGTC TTAA AAA TTAA TTTTTTTCAATATAT mutT 221477 - 221851 + | mutator MutT protein yacE 222487 - 221834 - | hypothetical protein TERM 247 221944 - 221954 + g 82 -2.6 -6.09888 | opp_overlap 221944 AAATATATAGATTAA TTTT TTT AAAA TTTTTTTTATTAAAA TERM 248 222030 - 222048 + g 77 -6.1 -4.71223 | opp_overlap 222026, overlap 222026 AACGCAATAATTTTT TTAGCTT CTAAA AAGCTAA TTTTGTCTCTTCTGA guaC 222543 - 223592 + | guanosine 5'-monophosphate oxidoreductase TERM 249 223627 - 223670 + F 95 -7.2 -5.85178 | opp_overlap 223627 TTTTACATTTTAAAA TCAATAAAATTAATTATA CTTATATA TATATTTAATTTTATTGA TTTTTTTTAGATGTT TERM 250 223670 - 223627 - f 77 -7.9 -4.16943 | opp_overlap 223627 TTTTACATTTTAAAA TCAATAAAATTAATTATAC TTATAT ATATATTTAATTTTATTGA TTTTTTTTAGATGTT aceE 223819 - 226482 + | pyruvate dehydrogenase subunit E1 aceF 226486 - 227703 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 251 228087 - 228070 - g 100 -5.7 -5.9873 | GTATGAGAAAAAAAA GAAAAAT AAGA ATTTTTC AAGGCCATGCTATTT lpdA 227748 - 229169 + | dihydrolipoamide dehydrogenase TERM 252 229176 - 229190 + T 78 -4.4 -5.75342 | AATAAATAATGATTT TTTTTT ATT AAAAAA TTTTTTTTAGAAAAA TERM 253 229206 - 229242 + T 100 -14.1 -5.86061 | opp_overlap 229206 229211, overlap 229241 TTTTTTTTAGAAAAA GAAAAGATTATAGAAAT TAA ACTTCTATAATCTTTTC TTTTTTTTAATAAGA TERM 254 229242 - 229206 - T 100 -16.3 -4.82901 | opp_overlap 229206 229241, overlap 229211 TTTTTTTTAGAAAAA GAAAAGATTATAGAAAT TAA ACTTCTATAATCTTTTC TTTTTTTTAATAAGA TERM 255 229237 - 229211 - T 100 -10.4 -5.35224 | opp_overlap 229206, overlap 229206 TTTAGAAAAAGAAAA GATTATAGAAAT TAA ACTTCTATAATC TTTTCTTTTTTTTAA speD 230139 - 229342 - | S-adenosylmethionine decarboxylase speE 231018 - 230158 - | spermidine synthase pfs 231992 - 231294 - | 5'-methylthioadenosine nucleosidase yadR 232400 - 232056 - | iron-sulfur cluster insertion protein ErpA ftsZ 233788 - 232634 - | cell division protein FtsZ TERM 256 233856 - 233886 + r 78 -8.6 -3.90744 | opp_overlap 233853 TGTTTTTAAAATTCT TTTTTAAACCAATT ATT AATTCGTTTAAAAA TTATTTCAAAAAAAG ftsA 235102 - 233846 - | cell division protein FtsA TERM 257 235237 - 235227 - R 72 -2.6 -5.76633 | overlap 235234 235236 GTATATATAAAAAAA TATA ACA TATA AGATAAATATCTTAT murC 237671 - 236217 - | UDP-N-acetylmuramate-alanine ligase TERM 258 236867 - 236877 + g 71 -4 -5.05113 | TTATATAAAAATGTC CAAT AAA ATTG TTTTGTTTATATAAA TERM 259 237631 - 237659 + g 70 -4.8 -4.71186 | opp_overlap 237635, overlap 237619 237619 TTATTTTTTTTTTCA GAAATAAAAAAA TTAAT TTTTTTTATATC TTTTATATTCATACT murG 238778 - 237714 - | UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase ftsW 239974 - 238775 - | cell division protein FtsW murD 241293 - 239971 - | UDP-N-acetylmuramoylalanine-D-glutamate ligase TERM 260 240193 - 240214 + g 70 -3.2 -5.27399 | AAAACAGTAAATTTT TATTTTTA AAGTTC TAAAAATA TTTTTTAATATATTA mraY 242366 - 241293 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 243727 - 242360 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase TERM 261 242431 - 242445 + g 100 -3.6 -6.67286 | TACTACGAGATCCTT TAACTA ATA TGGTTA TTTTTTTTTTCTTTA murE 245217 - 243724 - | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase TERM 262 245233 - 245246 + r 72 -3.9 -5.37593 | TCAGTTCCTTTTATT TGATT TTAA AATCA TTTTTTGATTTGACA ftsI 246957 - 245218 - | cell division protein FtsI TERM 263 245337 - 245321 - G 78 -10.1 -2.67364 | opp_overlap 245320, overlap 245320 245319 ATATTACTAAAAACT GGAGCAG AAA CCGCTCC TCCATAATATTTTTT TERM 264 246921 - 246937 + g 86 -2.3 -6.28401 | overlap 246923 TATAATTTATTTGTT TTGATTT TAA AAATCTA TTTTTTTCTTTTTTA TERM 265 246923 - 246935 + g 70 -4.9 -4.70159 | overlap 246921 TAATTTATTTGTTTT GATTT TAA AAATC TATTTTTTTCTTTTT TERM 266 246989 - 247005 + r 81 -5.3 -5.67063 | opp_overlap 247000, overlap 246985 ATCAATGTACATTTA TTTTTAT AAA ATAAAAA TTTTTTTATGCTAAA ftsL 247275 - 247022 - | cell division protein yabC 248216 - 247278 - | hypothetical protein TERM 267 247542 - 247553 + g 71 -4.4 -4.86939 | overlap 247545 AAGTATTTTTAGCGT GCTT TCTA AAGC TTTTTGAATTTCTTC TERM 268 247715 - 247726 + g 73 -4.4 -5.06414 | GACTTCTACGTTTGA TAGC ATAA GCTA TTTTTCTTGAAAAAC ilvH 248814 - 248338 - | acetolactate synthase small subunit ilvI 250534 - 248819 - | acetolactate synthase large subunit TERM 269 251431 - 251442 + H 72 -3 -5.79635 | opp_overlap 251431, overlap 251421 TTGACTTCCGGAAAG GAAA ATTT TTTC TTTTATTTTTTTTTT htrA 252152 - 253588 + | serine endoprotease TERM 270 253601 - 253624 + T 100 -8 -5.77677 | overlap 253602 TAATAATTTTATAGT TCCGCCCGAA CAAA TACGGGCGGC TTTTTTCTTATTTTA TERM 271 253602 - 253623 + T 95 -11.5 -4.02946 | overlap 253601 AATAATTTTATAGTT CCGCCCGAA CAAA TACGGGCGG CTTTTTTCTTATTTT dapD 254456 - 253632 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 272 253930 - 253912 - G 73 -5.4 -4.71426 | CGGGCACCAATAAAA CAATTATC TTC AATAATTG TAGGATTATTTTGAA map 255311 - 254517 - | methionine aminopeptidase rpsB 255574 - 256308 + | 30S ribosomal protein S2 TERM 273 256895 - 256878 - g 78 -5.7 -4.86731 | GTTCGCTAAATAAAA CAATATT AAAA AATATTG CAATGCATATAGCTG tsf 256385 - 257191 + | elongation factor Ts TERM 274 257567 - 257581 + G 72 -7.2 -3.91144 | opp_overlap 257569 GTCTAATGTCTGCAA TACCAT TAA ATGGTA TTTGTGAAATATACA pyrH 257242 - 257970 + | uridylate kinase frr 258051 - 258608 + | ribosome recycling factor dxr 258691 - 259887 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 275 259890 - 259908 + F 74 -9 -2.80338 | opp_overlap 259890 259889 TTTAATTTTTTAAAC GTACATTA TGT TAATGTAC TAATTCATCAATTAT TERM 276 259908 - 259890 - f 74 -9 -2.74322 | opp_overlap 259890, overlap 259889 TTTAATTTTTTAAAC GTACATTA TGT TAATGTAC TAATTCATCAATTAT uppS 259980 - 260735 + | undecaprenyl pyrophosphate synthetase TERM 277 261119 - 261103 - g 77 -5.1 -5.2189 | overlap 261106 TGAAGCATTAAAAAA CATTCCT TTT AGGATTG GAAGTACAATATCTC TERM 278 261510 - 261498 - g 75 -3.5 -5.4659 | overlap 261504 GAACAGAAATAAAAA TTAAT AGT ATTAA AATACTCGGCGTTCA yaeT 260969 - 262822 + | hypothetical protein TERM 279 263037 - 263051 + G 71 -7.2 -3.82084 | opp_overlap 263037 263036 263039 ATATGGCTCATAAAC TAGGTT TAA AACCTA TTATTGGTATTACAG TERM 280 264113 - 264092 - g 75 -5.9 -4.65895 | opp_overlap 264092, overlap 264094 TTTTGTATGGAAAAA CGTGATCAA GTAA TTGATCATG TTTCAGAGATATATG TERM 281 264092 - 264113 + G 74 -8.1 -3.57119 | opp_overlap 264092 264094 TTTTGTATGGAAAAA CGTGATCAA GTAA TTGATCATG TTTCAGAGATATATG dnaE 262859 - 266344 + | DNA polymerase III alpha chain TERM 282 266408 - 266374 - T 89 -8.2 -5.20781 | opp_overlap 266374 266376 266385, overlap 266364 266376 266399 TATTATAAAATAAAA TTTTAATCAAATTTTT TAA AAAAATTTGATCAATA ATATTGTCAAGTAGA TERM 283 266406 - 266376 - T 81 -10.8 -2.80878 | opp_overlap 266376 266374 266385, overlap 266364 266374 266399 TTATAAAATAAAATT TTAATCAAATTTTT TAA AAAAATTTGATCAA TAATATTGTCAAGTA TERM 284 266376 - 266406 + T 71 -8.6 -2.8055 | opp_overlap 266364 266374 266376 266399, overlap 266374 266385 TTATAAAATAAAATT TTAATCAAATTTTT TAA AAAAATTTGATCAA TAATATTGTCAAGTA proS 268190 - 266472 - | prolyl-tRNA synthetase TERM 285 268360 - 268375 + H 76 -4.8 -5.40474 | opp_overlap 268362 268374 TATAGAATTTTCAAT TATCAT AAAA ATGATA TTTTTTTAAAAAAAT TERM 286 268777 - 268799 + G 76 -4.2 -5.55855 | opp_overlap 268777 268780, overlap 268780 268782 ATTTATTAAAAATAT TAATGTCTCT AAA AGAGATACTA TTTTCTTTTTTTCCA flhB 268530 - 269681 + | flagellar biosynthesis protein FlhB TERM 287 270561 - 270609 + G 83 -6.9 -4.93696 | TATTTTATTAAGTGC GATAGTATTAGGAGTTCTTGG TTTAGTT CCAGGAATGCCAAATATTATC TTTTTAGTATTTACA flhA 269674 - 271764 + | flagellar biosynthesis protein FlhA argS 273612 - 271888 - | arginyl-tRNA synthetase TERM 288 272032 - 272015 - G 72 -7.1 -3.95627 | AAAAGTATAGAACAA TTCTCAT AAAA ATGAGAA AAACTAGTTGCAAGA TERM 289 272420 - 272451 + g 80 -7.5 -4.50976 | gap 1 ATTAAACGCATCGCC CTTTCTGTAGCTTC ATCAA GAAG-TGCAGAAAG TTTTATAGTATCACC TERM 290 274022 - 274000 - R 74 -7.9 -3.69216 | overlap 273998 TTTTTATTTAAAATA TCTTAAAGA TTTTT TCTTTAAGA TTAAAAAAGTTTTTC TERM 291 274668 - 274648 - R 74 -8.3 -3.5594 | opp_overlap 274643 AAGTCAGGTGTGAAA TCCCTAGGC TCA ACCTAGGAA CTGCATTTGAAACTG TERM 292 275551 - 275568 + r 75 -9.1 -3.07291 | opp_overlap 275551 GTCGTAACAAGGTAA CCGTAGG GGAA CCTGCGG TTGGATCACCTCCTT gloB 276550 - 275795 - | hydroxyacylglutathione hydrolase TERM 293 276266 - 276248 - G 89 -7.6 -5.14525 | opp_overlap 276252, overlap 276260 276263 AAAAAAAACATAAAA TATCTTAT CTA ATAAGATA ATCCTATCTCCATGA TERM 294 276517 - 276534 + g 77 -2.1 -5.90981 | gap 1, opp_overlap 276516 276531, overlap 276531 GAACCCAAACATAGT TATCTGAT AAA ATC-GATA TTTTTTTTAATATCA dnaQ 277113 - 277826 + | DNA polymerase III epsilon chain TERM 295 277941 - 277925 - f 70 -7.9 -3.21593 | CAGTTGGTTAGAATA CCGGCCT GTC ACGCCGG GGGTCGCGGGTTCGA TERM 296 278126 - 278108 - g 75 -3.3 -5.38348 | overlap 278101 AAAAATATTAAAAAA TTTTTTA GAAGA TAAAAAA CAAATAGAAAATATT gmhA 278052 - 278633 + | phosphoheptose isomerase TERM 297 278835 - 278819 - g 75 -3.7 -5.48825 | opp_overlap 278818, overlap 278821 GATTAGTTAAAAAAA TTCATTC TTG GAATGGA ATCATTGCTGTAAGT gpt 278740 - 279216 + | xanthine-guanine phosphoribosyltransferase grpE1 279317 - 279901 + | heat shock protein GrpE1 TERM 298 279913 - 279965 + T 72 -6.2 -4.65078 | gap 1 ATAAAAATAATATGT TTTTTAGGTTTAATAATATTGTAAA GTAT TTTA-ATTGTTATTAAATCTAAAAA TTTTATTAAAAATAT yfjF 280279 - 279980 - | hypothetical protein TERM 299 280268 - 280280 + g 72 -4.9 -4.98758 | GACAACGGTTACTTT TATGA TCT TCATA TTTTTATAAATTTTT smpB 280373 - 280861 + | SsrA-binding protein TERM 300 280951 - 280939 - g 72 -3.3 -5.28942 | overlap 280940 TATGCTAAAGAAAAA GGGGA AAT TCCCA TAGGTGCAATATTAG TERM 301 281243 - 281220 - g 71 -4 -5.14965 | gap 1 ATTCTCATTAAAAAA TCTGTTTTGCG ACC CACAAAA-AGA TTACAAATTAGATAT yfhC 280870 - 281355 + | hypothetical protein acpS 281736 - 281356 - | holo-[acyl-carrier protein] synthase TERM 302 281692 - 281682 - G 71 -2.6 -5.45726 | CATACTTTAAAAAAA TATT TTT AATA CGTAATATTTCTACA TERM 303 281790 - 281837 + r 83 -10.4 -3.58176 | opp_overlap 281786 281800, overlap 281791 281819 281821 TTAAAAATTATTGAT TTTTTTAAAATCAGTTAAAAAT TTGA ACTTTTAACTAATTTTAAAAAA TTAGTTATATTATTC TERM 304 281821 - 281844 + r 76 -8.4 -3.57523 | opp_overlap 281800 281786, overlap 281790 281819 AAAAATTTGAACTTT TAACTAATTT TAAA AAATTAGTTA TATTATTCTATTAAT era 282712 - 281861 - | GTP-binding protein Era rnc 283389 - 282709 - | ribonuclease III lepB 284464 - 283520 - | signal peptidase I TERM 305 283738 - 283750 + g 72 -4.9 -5.00027 | GCATATTTTTTTGTT GAAAA TAA TTTTC TTTTGTATTTTTAAT lepA 286312 - 284480 - | GTP-binding protein LepA TERM 306 285547 - 285564 + g 78 -8.5 -3.73953 | TTTTATTTAATTTTT TAGGTGT AAAA ACACCTA TTTGATCAACATAAT TERM 307 286716 - 286728 + G 70 -4.9 -4.72986 | opp_overlap 286714 286723, overlap 286714 AATTAAATATATATC TTCAT AAG ATGAA TTTTTCCTCAGAATA TERM 308 287296 - 287273 - g 93 -11.2 -3.75686 | opp_overlap 287278, overlap 287278 GGAATAAAAGGAGAA TACAACATAC CCTG GTATGTTGTA GAAAAAAATATTGAA TERM 309 287504 - 287549 + G 71 -2.8 -5.4251 | gap 1, opp_overlap 287507, overlap 287505 287508 287509 CATCATATAAAAATA TTATTTGATTGTCCAGTTG CCGCCGTCA CACCTGGACAATC-AGTAG TTTTTTATGTATCAG TERM 310 287508 - 287546 + G 73 -8.3 -3.48985 | opp_overlap 287507, overlap 287505 287504 287509 ATATAAAAATATTAT TTGATTGTCCAGTTG CCGCCGTCA CACCTGGACAATCAG TAGTTTTTTATGTAT TERM 311 287509 - 287545 + G 75 -9.6 -2.67764 | opp_overlap 287507, overlap 287508 287505 287504 TATAAAAATATTATT TGATTGTCCAGTTG CCGCCGTCA CACCTGGACAATCA GTAGTTTTTTATGTA trmU 286508 - 287614 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ycfC 287650 - 288285 + | hypothetical protein purB 288324 - 289694 + | adenylosuccinate lyase TERM 312 290364 - 290353 - g 91 -2.2 -6.32216 | ACACATAAAAAAAAA CACC CGGC AGTG CAAGCATTTCGTTAT mltE 289718 - 290383 + | membrane-bound lytic murein transglycosylase E fabI 290497 - 291279 + | enoyl-[acyl-carrier-protein] reductase (NADH) rnb 291466 - 293415 + | exoribonuclease II ychE 293524 - 294171 + | hypothetical protein TERM 313 294775 - 294751 - g 72 -6.7 -4.14158 | GACACAAATAAAAGA TTTTAATTCAA ATG TTAAATTAAAA GATGTAAGGTTTATT lipB 294209 - 294844 + | lipoate-protein ligase B TERM 314 295049 - 295011 - g 90 -5.6 -5.69023 | overlap 295018 AAAATATTAAAAAAA TTAAATATTATCAATATT AAA AATCTTGATAACATTAAA GAAAAATTAAAAAAA lipA 294963 - 295934 + | lipoyl synthase TERM 315 296701 - 296668 - g 76 -8.4 -3.56346 | opp_overlap 296675, overlap 296671 AGAATATAAAATAGA TTACATAGTAATAG GACGTT CTATTACTATGTCA AAAAATCCAATTAAA TERM 316 296698 - 296671 - g 80 -10.1 -2.88375 | opp_overlap 296675, overlap 296668 ATATAAAATAGATTA CATAGTAATAG GACGTT CTATTACTATG TCAAAAAATCCAATT pyrF 296039 - 296749 + | orotidine 5'-phosphate decarboxylase TERM 317 297239 - 297224 - g 74 -2.6 -5.66989 | opp_overlap 297229 TAAATATTAAAAAAA TTCGTT TATT AACAAA TAATCCATTTAAAGT ribA 296797 - 297381 + | GTP cyclohydrolase II hns 297892 - 297485 - | DNA-binding protein H-NS cls 299698 - 298238 - | cardiolipin synthetase TERM 318 298607 - 298576 - G 72 -6.1 -4.26903 | opp_overlap 298575 298578 CCCATTTTACTAAAA TAGAATCATTATA TAAAGG TATAATGATGCTA ACTTCTACTCCTCTT TERM 319 299360 - 299372 + g 77 -6.3 -4.67353 | GCTTTTAATTCCGTG TAGAC CTT GTCTA TTTTTACATAACTGA TERM 320 299739 - 299752 + r 77 -2.5 -6.12458 | TGTCAAAAGATCTTC TATTT AATT AAATA TTTTTTATTTTTTTA yciA 300486 - 300079 - | hypothetical protein TERM 321 300181 - 300191 + g 71 -2.6 -5.53991 | GTATTGACCTAATGG TTTA GAA TAAA TTTTTTTAATCCATA yciB 301056 - 300523 - | hypothetical protein yciC 301827 - 301084 - | hypothetical protein TERM 322 301570 - 301605 + g 73 -4.4 -5.01042 | gap 1, opp_overlap 301575, overlap 301575 301578 ACTAATTAATGATTC CAT-AATTTTTAAAATA GAA TATTTTAATAATTCATG TTTTTCATTTAAATT TERM 323 301798 - 301787 - G 81 -3 -5.75342 | overlap 301763 TTTTTGTAAAAAAAA TGAT GCGT ATCA TGACGTAATTTATTT trpA 302741 - 301932 - | tryptophan synthase subunit alpha trpB 303926 - 302760 - | tryptophan synthase subunit beta TERM 324 303487 - 303506 + g 71 -7.2 -3.82503 | opp_overlap 303480, overlap 303485 CCCATTAATTTCATA CGAAACAC ATTT GTGTTTTG TCTTTTAATATCTTT TERM 325 303702 - 303712 + g 78 -2.6 -5.74684 | TAGTAAATCTTCTCT TTTA AGA TAAA TTTTTGTTTTTGTTC TERM 326 303975 - 303993 + r 72 -4 -5.31091 | TTATTTAACCATATC TTAATTTT TGA AAAATTGA TTTTATTTTCTTGTA trpC 305325 - 303964 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 306334 - 305306 - | anthranilate phosphoribosyltransferase TERM 327 306445 - 306489 + H 87 -10.5 -3.96148 | opp_overlap 306451 306460, overlap 306454 306460 ATGTGAATAATTCAA TTTAAATTTTAAAAACTTTAT TTT ATAAAGTTTTTAAAATCAAAA TTTATACTAAAAAAC TERM 328 306483 - 306451 - H 100 -13.9 -3.78811 | opp_overlap 306445 306454 306460, overlap 306460 ATAATTCAATTTAAA TTTTAAAAACTTTAT TTT ATAAAGTTTTTAAAA TCAAAATTTATACTA TERM 329 306474 - 306460 - H 72 -5.8 -4.70879 | opp_overlap 306454 306460 306445, overlap 306451 TTTAAATTTTAAAAA CTTTAT TTT ATAAAG TTTTTAAAATCAAAA TERM 330 306460 - 306474 + H 72 -5.8 -4.62069 | opp_overlap 306451 306460, overlap 306454 306445 TTTAAATTTTAAAAA CTTTAT TTT ATAAAG TTTTTAAAATCAAAA TERM 331 307321 - 307336 + G 70 -5.4 -4.60255 | TGTTTTTTTAATTTT TCCAGT GATT GCTGGA TTTTTAGAAAATTAT yedA 306569 - 307492 + | hypothetical protein TERM 332 308076 - 308066 - g 82 -2.6 -6.07627 | ATGTTCAAAAAAAAA TAAA TGG TTTA AAGGTGTTTTATGTG yciL 307521 - 308273 + | hypothetical protein sohB 308348 - 309358 + | putative periplasmic protease TERM 333 309621 - 309595 - g 87 -2.4 -6.12458 | overlap 309596 309609 GAAAAAAACAAAAAA TTTTTAAATGAA AAT TTCATTGAAAAG ACTAATGAGAATAAA topA 309445 - 312030 + | DNA topoisomerase I suhB 312883 - 312083 - | extragenic suppressor protein SuhB TERM 334 312538 - 312549 + g 76 -4.4 -5.26119 | opp_overlap 312538 TAGGATCATATATTA CAGA AATT TCTG TTTTATTTTTCACGA yfgB 313130 - 314221 + | hypothetical protein gcpE 314272 - 315378 + | GcpE protein TERM 335 316171 - 316153 - g 70 -6.8 -3.95554 | overlap 316151 316157 TCATGGAATAAAATA TAAATGCA ATC CGCATTTA GTAAGAGGATTAGAC hisS 315404 - 316675 + | histidyl-tRNA synthetase glyA 316735 - 317988 + | serine hydroxymethyltransferase bioD 318750 - 318076 - | dethiobiotin synthetase TERM 336 319021 - 319045 + r 76 -6 -4.99861 | opp_overlap 319023 319039, overlap 319039 AGAAGAATTTCCCAA TATTTTATTT GAAGA AAATAAAATA TTTTTATGATTAATA bioB 320146 - 319115 - | biotin synthetase TERM 337 320096 - 320112 + g 70 -2.3 -5.50774 | opp_overlap 320088 320096, overlap 320090 CATAAGATTAAAAAA TGGTTTT TTA AAAAGCA TTTTTGTTTCTTCTA bioA 320225 - 321511 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase ybhE 322524 - 321520 - | 6-phosphogluconolactonase mfd 325086 - 322648 - | transcription-repair coupling factor TERM 338 325969 - 325955 - g 78 -7.2 -4.47259 | overlap 325949 ACTATAATATTAAAA GTGTTT TAA AAACAC TTAAGCCTGGATATT ycfU 325561 - 326760 + | hypothetical protein ycfV 326753 - 327439 + | ABC transporter ATP-binding protein TERM 339 327505 - 327490 - f 76 -4.8 -5.47399 | TTAATTGCAAAAAAA TTTTCT CTTA AGAAAA ACAAAAATTATTTAA TERM 340 327717 - 327707 - f 75 -2.6 -5.9873 | GTATGATAAAAAAAA TAAA TAT TTTA CCAGGAATTACTTAT gapA 328764 - 329774 + | glyceraldehyde 3-phosphate dehydrogenase A TERM 341 329868 - 329910 + T 87 -8.9 -4.62904 | gap 1, opp_overlap 329874 329876, overlap 329874 329909 329909 GATGGGTATATTTTT TATATATAGCAGTATTAATT TTTA ATTTAATACTGCTAT-TATA TTTTTAAAAATATTT TERM 342 329874 - 329905 + T 87 -10.4 -4.07746 | opp_overlap 329874 329876, overlap 329868 TATATTTTTTATATA TAGCAGTATTAATT TTTA ATTTAATACTGCTA TTATATTTTTAAAAA TERM 343 329905 - 329874 - T 81 -10.4 -2.88249 | opp_overlap 329868 329874, overlap 329876 TATATTTTTTATATA TAGCAGTATTAATT TTTA ATTTAATACTGCTA TTATATTTTTAAAAA TERM 344 329903 - 329876 - T 72 -8.6 -2.9914 | opp_overlap 329874 329868, overlap 329874 TATTTTTTATATATA GCAGTATTAATT TTTA ATTTAATACTGC TATTATATTTTTAAA TERM 345 330071 - 330051 - T 89 -8.5 -4.74504 | ATGTGAATTGAAAAA TTTAGTTTA AAA TAAACTAAA AAAGTCTATTATTCT TERM 346 330078 - 330094 + T 81 -5.3 -5.5762 | TAAACTAAAAAAGTC TATTATT CTA AATAATA TTTTTTATATTTAAT fldA 330620 - 330105 - | flavodoxin FldA phrB 330827 - 332278 + | deoxyribodipyrimidine photolyase TERM 347 332413 - 332429 + G 71 -8.1 -3.20302 | opp_overlap 332428, overlap 332404 332412 332409 GTGACTGCTTGTCAG GCTTTAT TAG ATAAAGC ATTATTTTATAATGC TERM 348 332444 - 332428 - g 80 -8.1 -4.08706 | opp_overlap 332413 332412 332409 GCTTTATTAGATAAA GCATTAT TTT ATAATGC CGATACTTTAATAGT ybgI 332275 - 333018 + | hypothetical protein TERM 349 333700 - 333690 - g 74 -2.6 -5.60689 | CTATAGAAGAAAAAA TAAA TTT TTTA AAAGAATTAACTTAT kgd 333143 - 335872 + | alpha-ketoglutarate decarboxylase TERM 350 336894 - 336912 + G 80 -8.2 -4.07912 | overlap 336884 336895 336895 TAATGGGTGGCAATT TCACCATT ACT AATGGTGG TGTTTTTGGTTCCTT TERM 351 336895 - 336914 + G 72 -5 -4.93547 | overlap 336884 336894 336895 AATGGGTGGCAATTT CACCATTA CTAA TGGTGGTG TTTTTGGTTCCTTAA TERM 352 336895 - 336911 + G 78 -9.5 -3.03121 | overlap 336884 336894 336895 AATGGGTGGCAATTT CACCATT ACT AATGGTG GTGTTTTTGGTTCCT sucB 335888 - 337150 + | 2-oxoglutarate dehydrogenase E2 component gpmA 337248 - 337943 + | phosphoglycerate mutase pfkA 338127 - 339089 + | 6-phosphofructokinase TERM 353 339098 - 339120 + F 79 -9.8 -3.26405 | opp_overlap 339098 339097 339100, overlap 339097 339100 ATACTAATATAAAAT TAGTGCCGGT TTC ACCGGCGCTC TAGTTTTTAAATAAG TERM 354 339100 - 339118 + F 93 -12.4 -3.19102 | opp_overlap 339100 339098 339097, overlap 339098 339097 ACTAATATAAAATTA GTGCCGGT TTC ACCGGCGC TCTAGTTTTTAAATA TERM 355 339118 - 339100 - f 79 -10.2 -3.26743 | opp_overlap 339098 339097 339100, overlap 339098 339097 ACTAATATAAAATTA GTGCCGGT TTC ACCGGCGC TCTAGTTTTTAAATA glpF 339155 - 339946 + | glycerol uptake facilitator protein tpiA 340722 - 339955 - | triosephosphate isomerase himD 341105 - 340821 - | integration host factor beta-subunit rpsA 342877 - 341201 - | 30S ribosomal protein S1 aroA 344999 - 343716 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 356 343877 - 343856 - G 73 -8.9 -2.58861 | overlap 343855 GATGATCGTTATAAG TTTCAATAC TAGA GTATTGAAA AAAAATAGGTGGAGA serC 346151 - 345066 - | phosphoserine aminotransferase serS 347473 - 346190 - | seryl-tRNA synthetase TERM 357 346327 - 346354 + g 74 -2.8 -5.71712 | overlap 346329 CAGAACCATTTAATG TGTGTACAAAAA AATT TTTTTGTTCAGA TTTTTTTCTATAACG TERM 358 346726 - 346754 + g 88 -10.5 -3.40073 | opp_overlap 346723, overlap 346730 TGATAGGTAAATCTT TTTCGTCTATGAT TTG ATCATAGACTAAA TTAGTTAATGGAACT TERM 359 346730 - 346750 + g 87 -11.3 -2.61216 | opp_overlap 346723, overlap 346726 AGGTAAATCTTTTTC GTCTATGAT TTG ATCATAGAC TAAATTAGTTAATGG TERM 360 347275 - 347285 + g 74 -2.6 -5.67711 | TTAACAATTCATTTT TATT CTT AATA TTTTTGTTTTCTTTA TERM 361 347368 - 347385 + g 75 -7.1 -4.15543 | GTAAAGTTTTTCTTT TTTCTTC CATA GAAGAAA TTTTAGAAATATTTA TERM 362 347499 - 347509 + H 72 -4 -5.41143 | GCTCTTTTTGATTAT CAAT GAA ATTG TTTTTTTAAAAAATG TERM 363 348117 - 348099 - g 81 -3.1 -5.82388 | overlap 348088 348087 AAATTTTAAAAAAAA CCCTTTT TTTTT AATAGGG GAAAATAATAAATAT trxB 347821 - 348780 + | thioredoxin reductase TERM 364 348817 - 348837 + F 88 -11.3 -2.89534 | opp_overlap 348817, overlap 348808 348819 ATTATATCATTTAAA TACTAGTCA AAA TGACTAGTA TCTGATATAATTAAT TERM 365 348837 - 348817 - f 93 -11.3 -3.70417 | opp_overlap 348808 348817 348819 ATTATATCATTTAAA TACTAGTCA AAA TGACTAGTA TCTGATATAATTAAT TERM 366 348819 - 348835 + F 75 -9.5 -2.99433 | opp_overlap 348817, overlap 348817 348808 TATATCATTTAAATA CTAGTCA AAA TGACTAG TATCTGATATAATTA infA 348887 - 349105 + | translation initiation factor IF-1 TERM 367 349263 - 349226 - f 82 -6.7 -5.10516 | opp_overlap 349231 AAAAACTAAATAAAA TAAATTTTTTCTTATTT TAAA AAATAAAAAAAATTTTA AAGAGAATTTATGCG TERM 368 350336 - 350318 - g 75 -3.3 -5.47218 | TTTGATGCAAAAAAA TTATTTT ATATG AAAATAA AAGAATGCAAACTTG aspS 349274 - 351034 + | aspartyl-tRNA synthetase TERM 369 351040 - 351056 + T 72 -3.1 -5.82172 | opp_overlap 351037 351036, overlap 351037 351042 351049 AAAAAAATAAGCTTT TATTTTT AAT AAAAATG TTTTTTTATGTTACT znuB 351833 - 351045 - | high-affinity zinc uptake system membrane protein ZnuB TERM 370 351446 - 351456 + g 76 -4 -5.45652 | opp_overlap 351446 TGCTTATTGAAATAG TGAT TAA ATCA TTTTTTGTTACAGAT znuC 352607 - 351891 - | high-affinity zinc uptake system ATP-binding protein ZnuC TERM 371 352607 - 352621 + r 73 -2.2 -5.87688 | TTACGAATTCAAACA TAGTTT TAT AAATTA TTTTTTTTAAATTCT TERM 372 353292 - 353268 - R 73 -4.5 -5.1485 | opp_overlap 353268, overlap 353270 TAATTAATATAAAAA TATAAATAAAA TAG TTTTATTTAAA TTCTTTATCATATAT TERM 373 353290 - 353270 - R 74 -7.1 -4.18115 | opp_overlap 353268, overlap 353268 ATTAATATAAAAATA TAAATAAAA TAG TTTTATTTA AATTCTTTATCATAT pykA 355367 - 353925 - | pyruvate kinase TERM 374 354126 - 354138 + g 74 -4.9 -5.14563 | AAGACTTGCTAAATT TAAAG TTT CTTTA TTTTTTGATAAAGCA zwf 355650 - 357125 + | glucose-6-phosphate 1-dehydrogenase TERM 375 357779 - 357791 + G 77 -6.3 -4.73912 | opp_overlap 357779 357778 TGACCTTAGTACAAG GTGTT GTT AACAC TTTTGTGATTTTTAT htpX 357310 - 358188 + | heat shock protein HtpX TERM 376 358246 - 358195 - f 70 -7 -3.98661 | opp_overlap 358211 TATATGTAGTATAAA TCTATCTCTCTTAATAGAAGTATA GAAA TATATTTCTATTAAGAAAATTAAA AAATTGAAACATATA cspC 358537 - 358746 + | cold shock-like protein CspC TERM 377 360162 - 360151 - g 85 -3 -6.11644 | opp_overlap 360151 CTATTGAAAAAAAAA TAGA CGCA TCTA CTTTTTCTAGTAAAA yoaE 359049 - 360614 + | hypothetical protein TERM 378 361032 - 361013 - g 72 -3.7 -5.20756 | GCAAAAAAAAAACAA GTATATT GGGCAA AATATAC AAGAAATAAAAACTC yeaZ 360644 - 361309 + | hypothetical protein TERM 379 361379 - 361339 - T 100 -12.2 -5.60689 | opp_overlap 361346 361348 TTATATAATAAAAAA CAATCAATGCTGAAATAT TAAAT ATACTTCAGTATTGATTG AACTAAATTTACAGT minE 361706 - 361455 - | cell division topological specificity factor MinE minD 362522 - 361710 - | septum site-determining protein MinD TERM 380 362225 - 362251 + g 80 -8.8 -3.96624 | overlap 362226 CTTTTTCAACTCCTA TTCGTGTTAAAG CGT CTTTATCACGAG TTTGTGATGCAGGTA TERM 381 362226 - 362250 + g 81 -10.1 -2.97653 | overlap 362225 TTTTTCAACTCCTAT TCGTGTTAAAG CGT CTTTATCACGA GTTTGTGATGCAGGT TERM 382 362274 - 362284 + g 91 -4 -5.9362 | opp_overlap 362274 TGCAGGTAGTATAAA CAAA TTA TTTG TTTTTTTATCTTTTA minC 363262 - 362549 - | cell division inhibitor MinC TERM 383 363684 - 363662 - H 100 -10.8 -6.3578 | opp_overlap 363668 363676, overlap 363671 363674 363676 ATTTTAAAAAAAAAA TATGAACAAT AAT ATTGTTCATA ACAATTTATTAATTT yjjT 363663 - 364505 + | hypothetical protein TERM 384 364749 - 364759 + T 72 -2.6 -5.71712 | opp_overlap 364749 ACAAAAAATGAATTA TTTT AAA AAAA TTTTTTTGTATAAAA TERM 385 364909 - 364893 - T 70 -8.7 -2.52676 | overlap 364906 364907 GAGCGGTTTAAGGCA GCGGTCT TGA AAACCGC CGACGAGAAATCGTC ompA 366105 - 365056 - | outer membrane protein A precursor TERM 386 366189 - 366164 - R 80 -7.9 -4.39329 | opp_overlap 366163 366160 366178 366180 366181 366188, overlap 366174 366178 ACTGTATAGAATAAA TATTATATAAT AAAT ATTATATAATA AATATTATATATAAT TERM 387 366232 - 366174 - R 76 -8.8 -3.63138 | opp_overlap 366163 366160 366178 366180 366181 366188 366195, overlap 366164 366178 366192 ATAAATATTATATAA TAAATATTATATAATAAATATTATATAT AAT ATATATAATACATACTTTATAATACTTA CTACTATATTTAAGA TERM 388 366228 - 366178 - R 76 -7.4 -4.41716 | opp_overlap 366163 366160 366178 366180 366181 366188 366195, overlap 366164 366174 366192 ATATTATATAATAAA TATTATATAATAAATATTATATAT AAT ATATATAATACATACTTTATAATA CTTACTACTATATTT TERM 389 366214 - 366192 - R 80 -8 -4.41716 | opp_overlap 366160 366181 366180 366178 366188 366195, overlap 366178 366174 ATATTATATAATAAA TATTATATAT AAT ATATATAATA CATACTTTATAATAC mviN 367777 - 366242 - | virulence factor MviN-like protein TERM 390 366464 - 366477 + g 74 -3.9 -5.33405 | GATGAATTCACTACG TTGTA AAGA TACAA TTTTTCTTTGATACA TERM 391 367731 - 367702 - G 72 -5.9 -4.45544 | overlap 367718 TGCTAGCAATTAAAA TATCTCGAACA AAACCTAA TATTCGAGATA TTAAAGTCATCAAAC pyrC 368052 - 369104 + | dihydroorotase flgN 369531 - 369124 - | flagella synthesis protein FlgN flgA 370284 - 369604 - | flagella basal-body P-ring formation protein FlgA precursor TERM 392 369942 - 369953 + g 73 -4.4 -5.10767 | ATTCTTTTATTCTTG TTCC TCGG GGAA TTTTTCTATTCGCTA TERM 393 370752 - 370734 - g 80 -6.2 -4.98522 | opp_overlap 370745, overlap 370745 AACTCTATATAAAAA TAAAAAAA CTA TTTTTTTA AAAAAAACTTCTCCT flgB 370621 - 370968 + | flagellar basal-body rod protein FlgB flgC 370977 - 371387 + | flagellar basal-body rod protein FlgC TERM 394 371500 - 371485 - g 78 -2.6 -5.75945 | AGCTGTCAAAAAAAA TGATAA TAAT TTACCA AATGACATCAACCCA flgD 371399 - 372109 + | basal-body rod modification protein FlgD TERM 395 372417 - 372402 - g 74 -6.1 -4.56607 | opp_overlap 372402, overlap 372397 TTAGGAATTATAAAA GACGG CTTTTT CCGTC TTGTAGACAGTCAAG flgE 372150 - 373376 + | flagellar hook protein FlgE TERM 396 373958 - 373948 - g 78 -2.6 -5.78622 | TTATCTGAAAAAAAA TAAT GAA ATTA ACAAAAAACATACTA flgF 373403 - 374161 + | flagellar basal body rod protein FlgF flgG 374179 - 374961 + | flagellar basal body rod protein FlgG flgH 375045 - 375761 + | flagellar basal body L-ring protein TERM 397 375807 - 375795 - f 71 -4.9 -5.01732 | opp_overlap 375785 375793 375795 AATCGTTTTAAAAAA CTATT TAA AATAG TATTTCTTATAAATT TERM 398 375862 - 375832 - f 75 -7.8 -3.79481 | TAAATTTAATTCAAA CTCATAAAGAAC GTTATTT ATTCTTTATGAG AAAAATTAAATATAT flgI 375942 - 377099 + | flagellar basal body P-ring protein flgJ 377099 - 377398 + | flagellar protein FlgJ TERM 399 377881 - 377865 - g 84 -3.8 -5.81412 | TTTAGCTAAAAAAAA TGTTTT TAATG AAAACA TACAGAAGAAATTAA TERM 400 378107 - 378093 - g 73 -8.6 -3.02459 | opp_overlap 378092 TATCGAACAACGAGA TCGTCT GGT AGACGA ATTAAATGGTTTAAT flgK 377500 - 379131 + | flagellar hook-associated protein 1 TERM 401 379187 - 379159 - T 100 -13.5 -5.29782 | opp_overlap 379159 379165, overlap 379165 CATACTTATAAAAAA TAAAAACTTACTT TTA AAGTAAGTTTTTA TTTTTTGTCTAAGTA TERM 402 379159 - 379187 + T 100 -13.5 -5.38047 | opp_overlap 379159 379165, overlap 379165 CATACTTATAAAAAA TAAAAACTTACTT TTA AAGTAAGTTTTTA TTTTTTGTCTAAGTA TERM 403 379181 - 379165 - T 100 -8.1 -5.8096 | opp_overlap 379159 379165, overlap 379159 TATAAAAAATAAAAA CTTACTT TTA AAGTAAG TTTTTATTTTTTGTC TERM 404 379165 - 379181 + T 100 -8.1 -5.8096 | opp_overlap 379165 379159, overlap 379159 TATAAAAAATAAAAA CTTACTT TTA AAGTAAG TTTTTATTTTTTGTC rne 382004 - 379296 - | ribonuclease E TERM 405 379491 - 379509 + g 85 -3.2 -6.02914 | opp_overlap 379491, overlap 379493 ATTTTTTCTATTACA TGTTCTTT TAT AAAGAAAA TTTTTTTTATCTAAA TERM 406 380176 - 380196 + g 72 -7.1 -3.93177 | opp_overlap 380173 380170 TTGTTTAAAGAACTA TATTTTTTT TTA AAAAAAATA TTATTCGTATTTTTT TERM 407 382298 - 382258 - H 72 -3.8 -5.5353 | gap 1, opp_overlap 382269 382275 TATATTAACAAAAAA TTTATT-TAATATATTTAT ATAA ATAATTATATTATAATAAA TAAAAATTAAAAAAA rluC 382339 - 383283 + | ribosomal large subunit pseudouridine synthase C TERM 408 383281 - 383295 + F 86 -5.8 -5.78622 | opp_overlap 383273 383279 383281, overlap 383273 TTAAATACTATAATA TAGTTT ATT AAACTA TTTTTTTTAACATAC rpmF 383329 - 383493 + | 50S ribosomal protein L32 TERM 409 383515 - 383535 + F 78 -8.4 -3.91858 | opp_overlap 383515 383534 ATATTTAATAAGAAA TGGTACTT GAAAA AAGTACCA TTTATAAAATATATA TERM 410 383535 - 383515 - f 84 -8.4 -4.47456 | opp_overlap 383515, overlap 383534 ATATTTAATAAGAAA TGGTACTT GAAAA AAGTACCA TTTATAAAATATATA TERM 411 383695 - 383651 - f 72 -6.2 -4.58663 | opp_overlap 383645 383661 ATTATTTTTTAAAAA TTTATTTTTATATATTTTTT AATAA AAAAAATATATTTAAATAAA ATTAAAAAGTAAAAT TERM 412 385502 - 385516 + G 79 -5 -5.53288 | opp_overlap 385502 GACAAAAAGAAGAAG TAGCAG ATG CTGTTA TTTTTTTAGCTTCAA fabG 384859 - 385593 + | 3-oxoacyl-[acyl-carrier protein] reductase TERM 413 385717 - 385701 - g 85 -3.1 -5.97575 | AACGTATAAAAAAAA TAATTTT TGA AAAACTA GATATAAAACAAGAA acpP 385670 - 385912 + | acyl carrier protein tmk 385983 - 386621 + | thymidylate kinase holB 386618 - 387598 + | DNA polymerase III delta' subunit TERM 414 387608 - 387582 - f 91 -9.8 -5.07567 | opp_overlap 387582 387589, overlap 387589 TTATATGGGAAAAAA TATTAAATTTTT CAT AAAAATTTAATA TTTATAAAAAAAGAG TERM 415 387582 - 387608 + F 83 -9.8 -3.85698 | opp_overlap 387582 387589, overlap 387589 TTATATGGGAAAAAA TATTAAATTTTT CAT AAAAATTTAATA TTTATAAAAAAAGAG ycfH 387632 - 388426 + | hypothetical protein ptsG 388523 - 389956 + | glucose-specific PTS system IIBC components ycfF 389976 - 390320 + | hypothetical protein TERM 416 390323 - 390349 + F 76 -5.4 -5.21683 | opp_overlap 390339, overlap 390321 390322 ATCTTTCTCCTAATT TTTTTATAGAAA AAA TTTTTATGAAAA TTTCTTTTTTTACAT TERM 417 390502 - 390479 - g 93 -5.5 -5.86332 | opp_overlap 390478 390479 CGAAGGTAAAAAAAA CAAATTTTA TTCTTT TAAAATTTG ATTCTGCTATAGAAA ycfM 390397 - 390906 + | hypothetical protein ompF 392303 - 391155 - | OmpF-like porin asnC 393843 - 392443 - | asparaginyl-tRNA synthetase TERM 418 392703 - 392717 + g 74 -2.8 -5.73339 | TAGGCACTAATATAT CTATTG CTG CAACAG TTTTTTTATCGTTAT TERM 419 393223 - 393200 - G 71 -7.6 -3.55071 | GCATATGTTTCTAAA TTTAACTGTC CCGA AACAGTTAAA AAAGATTCTTTTCCA TERM 420 393246 - 393227 - G 73 -4.4 -5.18561 | opp_overlap 393227 GAAACAGTTAAAAAA GATTCTTT TCCA AAAAAATC TTTTTTAAAATCAAC pncB 395190 - 393991 - | nicotinate phosphoribosyltransferase TERM 421 394211 - 394226 + g 75 -3.4 -5.45726 | TTTTTATGAAATTTT TTATAT AAAG ATATAA TTTTTTTAAAATCTA TERM 422 395369 - 395352 - H 74 -5.7 -5.09685 | overlap 395368 TTCAAAAAAAAATAA TATCTTT AAAA AAAGATA GCACGTAAAATAAAA pyrD 395612 - 396475 + | dihydroorotate dehydrogenase 2 TERM 423 397490 - 397478 - g 100 -6.3 -5.91981 | opp_overlap 397477 AAAAGCTAAAAAAAA TGCAT CAA ATGCA GGTGTTTTAAAAATA TERM 424 397865 - 397850 - g 72 -3.4 -5.35815 | TAGATTAAACAAAAA TTTTAA AAAA TTAAAA AAATGGATTAATTCG TERM 425 398159 - 398124 - g 76 -4.3 -5.35459 | opp_overlap 398124, overlap 398127 ACACAGTATAAAAAA TTATTTAATAGTAAT GATTTT ATCACTATTAAAGAA TATCATGCAAAATTT TERM 426 398669 - 398656 - g 71 -2.4 -5.52986 | opp_overlap 398642, overlap 398637 ATTGCATTAAAAAAA TGCA ATTACA TGCA AAAAAAATTACTAAC ycbY 396651 - 398756 + | 23S rRNA m(2)G2445 methyltransferase uup 398776 - 400566 + | ABC transporter ATP-binding protein Uup TERM 427 400555 - 400545 - T 72 -2.6 -5.77632 | overlap 400550 AAAATTAGAAAAAAA TATT ATA AATA CTAAAATATAGAATT yceA 401544 - 400570 - | hypothetical protein TERM 428 400834 - 400824 - G 71 -4.6 -4.86731 | opp_overlap 400824, overlap 400819 TCCCTTTAAACAAAA CGGG TAA CCCA TTTTTTCGAGCATCG valS 404468 - 401601 - | valyl-tRNA synthetase TERM 429 404390 - 404406 + g 75 -3.7 -5.40072 | opp_overlap 404389, overlap 404381 404392 ATTTTTCTAAATGAT TAGGTTT AAA AAACCCA TTTTTTTCCCAAAAA pepA 406044 - 404545 - | aminopeptidase A/I TERM 430 404614 - 404593 - G 72 -7.3 -3.91364 | opp_overlap 404592 AAATTGACATAATAA TTCAACAGG ACGT CCTGTTGCA CCTGATTTTTTTCCT TERM 431 406001 - 406025 + g 71 -4.4 -4.83169 | opp_overlap 406001 ACTACTATACAATCA GTTTTTTCTT TATCT AAGAAACAAC TTTTTATAAAAAAAT TERM 432 406777 - 406763 - g 71 -4.4 -4.99043 | opp_overlap 406763 TTTCCAGAAAGAAAA TTTTAT GAA ATAAAA TGTGCTTATGTTGGA argF 406304 - 407320 + | ornithine carbamoyltransferase subunit I pyrB 407439 - 408371 + | aspartate carbamoyltransferase catalytic subunit pyrI 408379 - 408843 + | aspartate carbamoyltransferase regulatory subunit TERM 433 409151 - 409139 - g 75 -3.5 -5.44119 | CTGATTTGAAAAAAA TTAAT ATT ATTAA TGAAATTTATAAAAA yhaR 408889 - 409275 + | hypothetical protein TERM 434 409358 - 409322 - T 74 -5.9 -4.84182 | overlap 409324 409326 409327 TTAAAAAAGAATAAA TACACTTAGTATGCCGC AAA GCGGCATAAAAAATACA AAATTAAACATTTCT deaD 411167 - 409362 - | ATP-dependent RNA helicase DeaD pnp 413671 - 411548 - | polynucleotide phosphorylase/polyadenylase TERM 435 413809 - 413795 - R 90 -7.1 -5.51165 | opp_overlap 413795 AAAATCGTAAAAAAA GGGCT AATAA AGCCC TTTGAAAAATTTATT rpsO 414142 - 413873 - | 30S ribosomal protein S15 truB 415185 - 414247 - | tRNA pseudouridine 55 synthase rbfA 415585 - 415223 - | ribosome-binding factor A TERM 436 415513 - 415528 + g 73 -5.4 -4.69028 | GATCTTTAAGTGAAT GCTGTA TAAT TGCAGC TATTTTTTTTTGCAA infB 418225 - 415631 - | translation initiation factor IF-2 TERM 437 416097 - 416077 - G 72 -6.9 -4.2354 | opp_overlap 416093, overlap 416074 TAAATCCTAAAATAA TAGCATTAG ACG CTAGTGCTA AAGAAGCATCTGTTT TERM 438 416132 - 416142 + g 74 -2.6 -5.67529 | AATACCTCCAATTCC TAAT CCT ATTA TTTTTATTTTTACTT TERM 439 416562 - 416572 + g 70 -6.8 -4.03234 | AATACTGTAGCTATT GGAC CTC GTCC TTTATCTAAAAAAGA TERM 440 416730 - 416747 + g 71 -7.1 -3.86252 | ATATTCTCACCACCC CATTCTT CTGA AAGAATG TTATATTTCATCAAG nusA 419733 - 418243 - | transcription elongation factor NusA TERM 441 419938 - 419953 + r 87 -10.4 -4.23723 | opp_overlap 419938, overlap 419951 CATTGTAATAAAAAA CCCCGA AAAG TCGGGG TTTTAGGTGCTATTA TERM 442 419953 - 419938 - R 100 -10.4 -5.46657 | opp_overlap 419938 419951 CATTGTAATAAAAAA CCCCGA AAAG TCGGGG TTTTAGGTGCTATTA secG 420535 - 420206 - | preprotein translocase subunit SecG TERM 443 420403 - 420419 + g 70 -5.3 -4.51891 | opp_overlap 420405, overlap 420400 TATTAGTTCCTATAC TATTAAA AAA TTTAATA TTATTTTTCGTATGT TERM 444 420601 - 420617 + r 71 -2.4 -5.8096 | overlap 420601 420601 420609 TTTACTTAAATATGC TTTTTT ATTAA AAAAAA TTTTTATTTTTTATA mrsA 422131 - 420797 - | MrsA protein TERM 445 421264 - 421233 - G 78 -6 -4.82901 | TGTGCGGGACAAAAA GGAATTCCAAGTTT TTTT AAACCTAGAATTAC ACCCATATTAGTCAT TERM 446 422199 - 422235 + r 83 -9 -4.15453 | opp_overlap 422183 422199, overlap 422202 TATTTTTTTAGAAAA TAAGATGAAGTTATAG TAATT TTATCACTTCATCTTA TTTTAAGATACATTA TERM 447 422235 - 422199 - R 80 -8.3 -4.3739 | opp_overlap 422199 422202, overlap 422183 TATTTTTTTAGAAAA TAAGATGAAGTTATA GTAATTT TATCACTTCATCTTA TTTTAAGATACATTA hflB 424186 - 422351 - | cell division protein FtsH TERM 448 423262 - 423252 - G 74 -6.8 -4.30844 | ACTTGACGATCAAAA CGAC CAG GTCG TAAGAGTGCAGGATC TERM 449 424093 - 424080 - G 80 -5.3 -5.24531 | opp_overlap 424080 ACTTCTGATAAAAAA GTTGA ATAG TCAAC TTTATGGTTATTTAC ftsJ 424872 - 424252 - | cell division protein FtsJ greA 425425 - 424946 - | transcription elongation factor GreA TERM 450 425271 - 425287 + g 78 -9.5 -2.9785 | overlap 425264 425270 425274 CTCTGTTCTTCACGA GCTGAAT GAT ATTCAGC ATTCTCTTTTAAATC TERM 451 425700 - 425687 - H 77 -2.5 -6.18768 | opp_overlap 425687 425692, overlap 425692 AAAATATAAAAAAAA TTAAA TTTA TTTAA TAAATTACTTAAAAC yrbA 425949 - 426191 + | hypothetical protein TERM 452 426374 - 426388 + G 70 -8.6 -2.72461 | opp_overlap 426374 426384, overlap 426373 AAGGAAAAATAAAAA TCGGAA ATA TTCCGA ATTTAACGGACATTA TERM 453 426388 - 426374 - g 100 -8.6 -5.67529 | opp_overlap 426373 426374, overlap 426384 AAGGAAAAATAAAAA TCGGAA ATA TTCCGA ATTTAACGGACATTA murA 426253 - 427503 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase rplU 427642 - 427968 + | 50S ribosomal protein L21 rpmA 427973 - 428227 + | 50S ribosomal protein L27 TERM 454 428264 - 428250 - f 89 -10 -4.63044 | opp_overlap 428250 428246 ATTTATATAAACAAA CCCCTT TTC AAGGGG TTCTATCTTTTTTAT TERM 455 428250 - 428264 + F 85 -10 -3.95724 | opp_overlap 428250, overlap 428246 ATTTATATAAACAAA CCCCTT TTC AAGGGG TTCTATCTTTTTTAT TERM 456 429006 - 428996 - g 71 -2.6 -5.54264 | AAATATTCAAAAAAA TAAA AAA TTTA TCATAGCAGATATTC TERM 457 429053 - 429067 + G 74 -5 -5.03747 | GGCATCTTATGGTGC CGGATT AGG AATTCG TTTTTTAAAGCATTT obgE 428379 - 429383 + | GTPase ObgE TERM 458 429416 - 429388 - T 88 -6.1 -6.04324 | opp_overlap 429388 TGAAAAAATAAAAAA GAACTCGGTTC ATTAAGA AAACCAAGTTC TTTTTAATCAAAACT rpsI 429843 - 429451 - | 30S ribosomal protein S9 rplM 430292 - 429864 - | 50S ribosomal protein L13 TERM 459 431224 - 431210 - g 86 -7.2 -5.15634 | opp_overlap 431209 GATTTTATTAAAAAA TTTCCA GAA TGGAAA ATTAAATATACTAAG pheA 430544 - 431701 + | chorismate mutase TERM 460 432502 - 432484 - g 82 -4.6 -5.65177 | overlap 432487 ATATTGATAAAAAAA TGATGAAT GAA ATTCAGCA AATACAAGTTATATC ffh 431883 - 433238 + | signal recognition particle protein rpsP 433347 - 433586 + | 30S ribosomal protein S16 rimM 433588 - 434118 + | 16S rRNA processing protein RimM TERM 461 434159 - 434145 - g 86 -2.2 -6.28631 | TAAATGAAAAAAAAA TATAAT GAA ACTATA ATATGCTTTAATATT TERM 462 434772 - 434782 + G 74 -8.2 -3.54543 | opp_overlap 434771 AACCACAATGAAATT CGCC TTT GGCG TTTAAAACAGTCACT trmD 434133 - 434846 + | tRNA (guanine-N1)-methyltransferase rplS 434945 - 435292 + | 50S ribosomal protein L19 TERM 463 435299 - 435331 + T 72 -4.3 -5.35459 | gap 1, opp_overlap 435301, overlap 435301 TTAAATTAATTTTAA TA-TGCAGTCATGA CATAAT TCTTGACTGCATTA TTTTTTATGGTATAT TERM 464 435301 - 435328 + T 89 -8.5 -4.74611 | opp_overlap 435301, overlap 435299 AAATTAATTTTAATA TGCAGTCATGA CATAAT TCTTGACTGCA TTATTTTTTATGGTA TERM 465 435328 - 435301 - T 72 -8.5 -3.1158 | opp_overlap 435299 435301 AAATTAATTTTAATA TGCAGTCATGA CATAAT TCTTGACTGCA TTATTTTTTATGGTA tldD 436827 - 435376 - | TldD protein TERM 466 435427 - 435442 + g 70 -6.2 -4.16146 | CATAGATGGTTGACC TATTCC AACT GGAATA TTTTGACCGTCTTTT TERM 467 436906 - 436890 - H 81 -3.8 -6.14618 | opp_overlap 436901 436901 436902, overlap 436901 GATAAAACAAAAAAA GAAAAA AATAA TTTTTC TAAAAAAATGTTATA aroD 436985 - 437437 + | 3-dehydroquinate dehydratase fis 437926 - 437630 - | factor-for-inversion stimulation protein rluD 439033 - 438095 - | ribosomal large subunit pseudouridine synthase D TERM 468 438135 - 438155 + g 78 -2.5 -5.86061 | overlap 438136 ATATCTTGAGGAAGT GGTACTGTC CAT GACATTACA TTTTTTTTAATAGGA yfiO 439198 - 439938 + | hypothetical protein TERM 469 439940 - 439916 - f 76 -6.7 -4.54753 | opp_overlap 439916, overlap 439913 AAATATCAAAAATAA TTTTATTAAAT AAA ATTCAATAAAA AAACTTGATTATTAT TERM 470 440474 - 440460 - g 74 -2.8 -5.63374 | overlap 440472 TTAACATCAAAAAAA TGGTTT AAC ATACCA CAAAATAAATTATGG TERM 471 440800 - 440782 - g 71 -4 -5.0916 | TCTCCAAGACAAAAA TTATTTCT TTA AAAAATAA ATCCATAGATACAGG TERM 472 441436 - 441426 - g 71 -2.6 -5.54885 | opp_overlap 441426, overlap 441428 AATATCAATAAAAAA TTTT ATA AAAA TTATAACAACAATAT TERM 473 441675 - 441651 - g 91 -7.3 -5.34555 | overlap 441654 TTATATCATAAAAAA TCATCTTTTCT AGT AGAAAAGACAA AAAAATATGGAAAAA TERM 474 441672 - 441654 - g 79 -9 -3.46407 | overlap 441651 TATCATAAAAAATCA TCTTTTCT AGT AGAAAAGA CAAAAAAATATGGAA TERM 475 442467 - 442455 - g 74 -4.9 -5.15167 | opp_overlap 442455 GATTATGAACAAAAA TCATT AAG AATGA TAGTTGATCAATTGA TERM 476 442549 - 442525 - g 71 -8.7 -2.94561 | opp_overlap 442529 442532, overlap 442520 442529 442532 TCTTAATAAATATTA TCAATAATCGT TTT ACGATTATTGT AGGTGTAACAAGAAA TERM 477 442529 - 442545 + G 73 -8.1 -3.39327 | opp_overlap 442520 442529 442525 442532, overlap 442532 AATAAATATTATCAA TAATCGT TTT ACGATTA TTGTAGGTGTAACAA TERM 478 442545 - 442529 - g 71 -8.1 -3.32294 | opp_overlap 442529 442532, overlap 442520 442525 442532 AATAAATATTATCAA TAATCGT TTT ACGATTA TTGTAGGTGTAACAA alaS 440103 - 442739 + | alanyl-tRNA synthetase csrA 442934 - 443107 + | carbon storage regulator TERM 479 443418 - 443402 - f 70 -8.7 -2.69468 | overlap 443414 CAGTTGGATAGAGTA CTCGGCT ACG AACCGAG CGGTCGGAGGTTCGA TERM 480 443986 - 443975 - g 80 -5.8 -5.04987 | opp_overlap 443975 AATAGGTTTAAAAAA TCGC TACG GCGA TTTGATAAATACTAT TERM 481 444981 - 444957 - g 70 -5.1 -4.69435 | GGAATAAAAAAAACA GGTCTCTATTT GGC AAATAAATACC ACGAAAAATTTATTA gshA 443565 - 445121 + | glutamate-cysteine ligase metK 446404 - 445268 - | S-adenosylmethionine synthetase TERM 482 445294 - 445312 + g 70 -6 -4.3739 | opp_overlap 445296, overlap 445297 CATTTACCTTGTCAA GATTTTCC CAT GGAAATTC TTTTCTACCAAAATG TERM 483 445297 - 445309 + g 72 -6.3 -4.30995 | opp_overlap 445296, overlap 445294 TTACCTTGTCAAGAT TTTCC CAT GGAAA TTCTTTTCTACCAAA TERM 484 446622 - 446647 + H 76 -5 -5.42198 | opp_overlap 446612 446610 446640, overlap 446614 AACGATATGTTTTTA TTTTTTAATA ACAACA TATTAAAAAA TTTTGTTTTTTAAAA endA 446639 - 447391 + | endonuclease I TERM 485 447750 - 447717 - gT 70 -8.5 -2.69603 | overlap 447714 AAAACCATTACACCA TTGTTTTTTGAAAAT GATC ATTTTCAAAAAAAAA GAATAAATTTTTCTA yggJ 447363 - 448124 + | hypothetical protein rpiA 448869 - 448198 - | ribose-5-phosphate isomerase A TERM 486 448407 - 448421 + g 71 -4.2 -5.06735 | CATTTTTACGATATT TTGGCG TTC CACCAA TTTTTATCATTTCTC TERM 487 448481 - 448503 + g 84 -3.4 -5.75822 | opp_overlap 448486, overlap 448484 448486 ATTTCAATTGGTAGA GGAAATGTTC CAA GAACATCTAC TTTTTTTGATTTGTC TERM 488 448829 - 448842 + g 100 -3.7 -6.50278 | TCAATATAATCTAGT GCCGC CCAA GCTGC TTTTTTTTTTAGTTT TERM 489 449438 - 449423 - H 78 -3.4 -5.9218 | opp_overlap 449423 449428, overlap 449428 TACATAAGAAAAAAA TATATT TTAT AATATA TAAATTGAATAATCA TERM 490 449998 - 449987 - g 90 -5.8 -5.59502 | opp_overlap 449990 449991, overlap 449988 449990 449992 GAAAAAATGAAAAAA GGAG ACTT CTCC GAAGGAGAAGCATGT TERM 491 450008 - 449992 - g 90 -10.9 -3.27687 | opp_overlap 449991 449990, overlap 449987 449990 449988 AATGAAAAAAGGAGA CTTCTCC GAA GGAGAAG CATGTTTGCGCGCAA glnS 449495 - 451210 + | glutaminyl-tRNA synthetase TERM 492 452260 - 452238 - g 74 -2 -5.64274 | opp_overlap 452244, overlap 452240 TTATGCAGAAAAAAA CTTTAACAAT ACT ATTGTTATTG GAATTATTGGAAAAT TERM 493 452410 - 452394 - g 73 -3.1 -5.54907 | GGTAGAAAATAAAAA TTTTCAA ATC TTAAAAA ATCTTAATGGCATCT TERM 494 452833 - 452812 - g 76 -8.9 -3.05539 | overlap 452804 452811 TATGAAGTAAATAAT CTTCTATTT AAAA AAATAGAAG CCGCAGGATTGCAGG pyrG 451384 - 453021 + | CTP synthetase eno 453051 - 454355 + | enolase nlpD 455517 - 454513 - | lipoprotein NlpD precursor TERM 495 454955 - 454976 + g 70 -3.1 -5.18995 | overlap 454944 454942 TTTATTTTTTTTATG CAAAAAAAA CATA TTTTTTTAG TTTTTATATTATCTT TERM 496 455307 - 455326 + g 86 -2.3 -6.18768 | opp_overlap 455307, overlap 455307 455307 455315 455317 TATTGCCAATAATAA TTTTTTT ATTTAA AAAAAAA TTTTTTTTATATTTT TERM 497 455486 - 455476 - G 78 -2.6 -5.81622 | opp_overlap 455476 AGAAAACGAAAAAAA TATT AAA AATA ATAATTTAAATAAAA TERM 498 455561 - 455551 - R 74 -5.4 -4.91852 | opp_overlap 455551 TTCATTAAAAATAAA TGTC TTA GACA ATATTTTTTTATATA ygbB 456093 - 455608 - | hypothetical protein ygbP 456822 - 456109 - | hypothetical protein TERM 499 456869 - 456850 - R 78 -5.2 -5.31545 | opp_overlap 456850 456850 456862, overlap 456843 456842 AATAAGACTAAAAAA TTTTTTTA AATT TAAAAAAA AATTTTTCTTTTATT ygbQ 457120 - 456905 - | hypothetical protein cysC 457798 - 457178 - | adenylylsulfate kinase cysN 459220 - 457799 - | sulfate adenylate transferase subunit 1 TERM 500 457878 - 457888 + g 76 -4 -5.47159 | overlap 457882 AAATCATAAAAATCT GATT CAA AATC TTTTTGTTTATTAGA cysD 460147 - 459239 - | sulfate adenylyltransferase subunit 2 cysG 461578 - 460157 - | ferrochelatase TERM 501 460587 - 460570 - G 70 -8.5 -2.57564 | overlap 460569 GTATTCCGGTATAAG CTGCAAT ACCA ATTGCAG AAGTAATACCTGGAA cysH 462651 - 461917 - | phosphoadenosine phosphosulfate reductase TERM 502 462432 - 462444 + g 93 -3.3 -6.25242 | opp_overlap 462432 TATCAATTAATATAA CAGGA ATA TCCGG TTTTTTTTTGATTAT cysI 464376 - 462667 - | sulfite reductase subunit beta TERM 503 463757 - 463767 + g 70 -5.4 -4.59846 | GGTAAATATGTTTTT CCTA ATA TAGG TTCTTTTTCTGTCGT TERM 504 463906 - 463918 + g 72 -6.3 -4.35044 | TTCCATAGGATTTGA TGTAC AAA GTACA TTTCTGTTTACATCA cysJ 466181 - 464376 - | sulfite reductase (NADPH) flavoprotein alpha-component mutS 468780 - 466372 - | DNA mismatch repair protein TERM 505 466536 - 466557 + g 70 -3.1 -5.25772 | opp_overlap 466526 466536, overlap 466524 466523 TAATAGCAGAAAAAT GAAAATTTT TTAC AAATTTTTC TTTTTCTTCTAATTT TERM 506 467382 - 467400 + g 100 -3.2 -6.82322 | opp_overlap 467375 467386, overlap 467375 467386 TATTAAATTTTATCT TAAATGAT TCA ATCATTAA TTTTTTTTTTTCTTT TERM 507 468756 - 468766 + g 95 -2.6 -6.63964 | overlap 468738 TATGATTGTTCATAC TATT CTT AATA TTTTTTTTTTTCATA dsbA 468937 - 469575 + | thiol:disulfide interchange protein DsbA precursor TERM 508 469948 - 469938 - g 95 -4 -6.12328 | AGAATATAAAAAAAA TAGA TCA TCTA TGCCTGATTTATTGG TERM 509 470176 - 470166 - g 82 -2.6 -5.94713 | opp_overlap 470166, overlap 470169 ATTCCATAAAAAAAA TAAT TGC ATTA TTACATCAGAAATAA TERM 510 470196 - 470169 - g 74 -5 -5.03409 | opp_overlap 470166, overlap 470166 CCATAAAAAAAATAA TTGCATTATTAC ATCA GAAATAATACAA GAAAAATATGGTATA TERM 511 470390 - 470365 - g 71 -2.7 -5.43553 | overlap 470360 470367 ATTGAAAAAATAAAA TCTTTACCATT AAGA AATGCTAAAAA TATTTCTATTCAACT polA 469696 - 470556 + | DNA polymerase I yihA 471236 - 470619 - | GTPase EngB TERM 512 471910 - 471925 + G 86 -6.2 -5.24551 | opp_overlap 471912 CCTGATTGGGTAGTA GATCAA GTTT TTGATC TTTTTGTTAATTTGA typA 471487 - 473310 + | GTP-binding protein BipA TERM 513 473395 - 473367 - T 74 -9.2 -2.71144 | opp_overlap 473361 473372, overlap 473369 473372 TATCTTTTTCAATTA TATAATTCTATT TATTC AATAGAATTATA TAAAAGTGTTCCTAA gmk 474056 - 473433 - | guanylate kinase ygfZ 475115 - 474156 - | hypothetical protein TERM 514 474440 - 474462 + g 76 -8.6 -3.56216 | CATAATAACATCCTT TTTTAAAGCT AAT AGCTTTAAGA TTATGTAAATTAATT prfB 475334 - 476383 + | peptide chain release factor 2 TERM 515 477038 - 477057 + G 88 -7.8 -4.81852 | CTACAAAATATTCCT GGAGGAGC TAAT GCTCGTCC TTTTATTACTTATCA TERM 516 477733 - 477707 - g 74 -6.8 -4.26398 | overlap 477705 477708 GAAGATCAAAAAACA CGATTTTTAAAT CAA ATTCAAAAATCA AATAAGGAAGATAAT TERM 517 477732 - 477708 - g 70 -8.1 -3.14212 | overlap 477707 477705 AAGATCAAAAAACAC GATTTTTAAAT CAA ATTCAAAAATC AAATAAGGAAGATAA lysS 476393 - 477913 + | lysyl-tRNA synthetase lysA 477979 - 479226 + | diaminopimelate decarboxylase TERM 518 479663 - 479653 - g 95 -2.6 -6.56554 | opp_overlap 479653, overlap 479658 AATATAAAAAAAAAA TATT AGA AATA TCTGATTTCATCACT TERM 519 479896 - 479912 + G 75 -3.7 -5.43621 | overlap 479898 TATACGAATTTTTTT TAGAAGG GAT TCTTCTG TTTTTTATAATTTAT lgt 479292 - 480137 + | prolipoprotein diacylglyceryl transferase TERM 520 480503 - 480492 - g 77 -3 -5.68438 | overlap 480496 TGATCAAATAAAAAA TGTA TTAA TACA ATTAAAAAAAAATCC thyA 480151 - 480945 + | thymidylate synthase TERM 521 481240 - 481221 - g 86 -2.2 -6.12458 | GAAAAAAATAAAAAA TAATAACC CAAA AGTCATTA TTGCTGTAGGGGGTT TERM 522 481440 - 481422 - g 71 -7.6 -3.59063 | overlap 481420 AGAAAAATTTAAATA TTTTTTAG CAC CTAAAAAA AAAGGATACACGGCA yleA 481012 - 482331 + | hypothetical protein TERM 523 482476 - 482464 - f 85 -3.5 -6.38039 | TATGTAAAAAAAAAA TATAA ACA TTATA ACAATCCGTATTGTA TERM 524 482523 - 482513 - g 71 -2.6 -5.37593 | opp_overlap 482513 TGGGAAATTAAAAAA TTAA ATT TTAA TTATAGAAAAAAAAA TERM 525 482561 - 482543 - g 71 -2.4 -5.48106 | opp_overlap 482544 482547, overlap 482544 482547 AGAAAAAAAAATAAA CCAACAAA TAT TTTGTCGT TTCCTTTTAATAAAT ybeY 482486 - 482821 + | hypothetical protein ybeX 482902 - 483777 + | hypothetical protein TERM 526 483953 - 483943 - g 84 -4 -5.75342 | overlap 483950 GTTTTGGAAAAAAAA CAAA ACT TTTG AAGTCAAAGAAGATC TERM 527 484248 - 484211 - g 91 -7.9 -5.28755 | AAATACATGAAAAAA CAACTCCAATCATTA GGTTTTAG TTATGATTGGAGTCG AGAAATAACTACATG TERM 528 486244 - 486260 + G 74 -6.7 -4.37092 | opp_overlap 486233 486257 CAACGAAAAATGGCC TATCTTT CAA AAAGATA TTTTATCAAAAAAAT leuS 483881 - 486460 + | leucyl-tRNA synthetase TERM 529 486537 - 486555 + G 100 -9 -5.44837 | opp_overlap 486536 AACTAAAAAAAAGTT TAATGCAA AAA TTGCATTA TTTTTATATTTTTTT TERM 530 486617 - 486601 - g 74 -2.3 -5.67063 | opp_overlap 486601, overlap 486578 TTTATTAGAAAAAAA TCAAGAT ATG ATATTGA ATTTTGCATATAAAA TERM 531 487218 - 487198 - g 71 -7.1 -3.88498 | opp_overlap 487200 CTTTTATATATTAAA TATTTTTTT TAA AAAAAAATA TAATCCTCTTATTTT TERM 532 487299 - 487345 + G 74 -4 -5.24129 | opp_overlap 487308, overlap 487300 AAAAAAAAATAAGTA TTTATGTAATGTTAGAAAAATA TAA TATTTTTGTAACAAGACGTAAG TTTTTTATCAAGGCA holA 486500 - 487495 + | DNA polymerase III delta subunit TERM 533 487631 - 487621 - g 82 -2.6 -5.93809 | TTTCTATAAAAAAAA TAAT ACT ATTA CCCAATAACTATCCT ybeN 487518 - 488162 + | hypothetical protein TERM 534 488210 - 488196 - f 100 -5.8 -6.30182 | opp_overlap 488196 TCACATAAAAAAAAA TCTATT TAA AATAGA TTCGATAAAAAAATG yhhP 488223 - 488453 + | hypothetical protein TERM 535 488593 - 488571 - T 95 -10.8 -5.24989 | opp_overlap 488570 488569 GTATACATTAAAAAA TTCTATTACT ATT AGTAATAGAA AATATTTTATATATT asd 489715 - 488600 - | aspartate-semialdehyde dehydrogenase yhgN 490011 - 490601 + | dITP- and XTP- hydrolyzing protein TERM 536 490644 - 490622 - f 79 -9.3 -3.62775 | ATTATTTTTTAAGAA CCTGTTATT AATGG AATAACAGG TTAAAATAATCGACT pgk 490715 - 491887 + | phosphoglycerate kinase fba 491903 - 492979 + | fructose-bisphosphate aldolase yggB 493115 - 493960 + | hypothetical protein TERM 537 494116 - 494091 - g 71 -4.1 -5.11063 | opp_overlap 494085, overlap 494085 494092 ATTATTGAAGAAAAA CCTTTTTCTAA TATT TTTGAAAAAGA GATATTTATTTATGA TERM 538 494338 - 494328 - g 74 -2.6 -5.60689 | TTAGATAATAAAAAA TTTT TTG AAAA TTGCAGTAAAAAAAA TERM 539 494396 - 494412 + G 70 -5.3 -4.58424 | opp_overlap 494409 ATTTTTAATGGCCAG TATATTT AAA AAATATA TTTTATATCGTCCTG TERM 540 494898 - 494879 - g 77 -2.2 -5.81032 | TAAGTCTAAAAAAAA TAAAGTAA TCAA TTGCTTTA AAAAAAATAAAAATA TERM 541 495708 - 495697 - g 70 -3 -5.25799 | AAAATAACACAAAAA TAGA AAAA TCTA TTCAAATAATTCAAA TERM 542 495762 - 495742 - g 91 -9.9 -4.16301 | opp_overlap 495742 495741 495739 AATGGATAGAAATAA TTGATGATA GTT TATCATCAA ATTATTTAAAAAAAA TERM 543 495742 - 495762 + G 80 -9.9 -2.94232 | opp_overlap 495742, overlap 495741 495739 AATGGATAGAAATAA TTGATGATA GTT TATCATCAA ATTATTTAAAAAAAA TERM 544 496251 - 496230 - g 77 -5.3 -5.0133 | overlap 496244 TATCTGTGCAAAAAA CATAAAAAA CAAT TTTTCTATG AAACAAAAAATATAG TERM 545 497086 - 497064 - g 71 -2.8 -5.38839 | TATACAAAAATAAAA GCATATAAAA AAT TATTATATAC CTGGAAAGGAGATAA recC 494019 - 497231 + | exodeoxyribonuclease V 125 kDa polypeptide TERM 546 497260 - 497241 - f 80 -2.2 -6.34424 | opp_overlap 497241, overlap 497244 GGTTGAAAAAAAAAA TAACAATT TGAA AATTGATA GTTTAAAAGAAAAAC TERM 547 497950 - 497930 - g 72 -7.1 -3.98016 | opp_overlap 497942, overlap 497928 ATCATGAAGAAAATA TAAAAAAAA TAA TTTTTTTTA AAGAAATGTGGTTGA TERM 548 498223 - 498211 - g 74 -4.9 -5.10526 | opp_overlap 498215 ATATTAAAAAAGAAA TTTTC ATT GAAAA ATGTCATTATAATCT TERM 549 499945 - 499935 - g 87 -2.6 -6.23545 | overlap 499944 TTTAAACAAAAAAAA TATT AGA AATA CTTGGAGTATAACAA recB 497248 - 500772 + | exodeoxyribonuclease V 135 kDa polypeptide TERM 550 501791 - 501768 - g 83 -7.6 -4.68994 | overlap 501769 ATTAGTATTGAAAAA CTTACACAAT ATAA ATTGTGTAAA AAAATAAATAAAAAA TERM 551 501790 - 501769 - g 79 -8.9 -3.40674 | overlap 501768 TTAGTATTGAAAAAC TTACACAAT ATAA ATTGTGTAA AAAAATAAATAAAAA recD 500778 - 502586 + | exodeoxyribonuclease V 67 kDa polypeptide argA 503953 - 502625 - | N-acetylglutamate synthase TERM 552 503964 - 503980 + H 70 -8.1 -3.17888 | overlap 503962 TTCATATCAATCCTC TTGCATT TTT AATGCAA TATATATATTATTTT mltA 504321 - 505400 + | murein transglycosylase A TERM 553 505452 - 505440 - g 74 -2.7 -5.65678 | AGAAAATATAAAAAA TGAAT ATA ATCCA ATCAGGAATTACAGC TERM 554 505613 - 505593 - g 73 -5.5 -4.67556 | overlap 505595 AGAACATCTTAAAAA TATATGTTC CTG GAACATATG AAATACCAACTATTG TERM 555 505611 - 505595 - g 78 -8.1 -3.9442 | overlap 505593 AACATCTTAAAAATA TATGTTC CTG GAACATA TGAAATACCAACTAT ribH 505439 - 505921 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 556 506498 - 506487 - g 76 -4.4 -5.252 | TATTTTTATAAAAAA CGTA AATA TACG AAATTATTTGATTAA thiL 505951 - 506922 + | thiamin-monophosphate kinase TERM 557 506924 - 506904 - f 72 -8.5 -3.12685 | opp_overlap 506903 506904, overlap 506903 CTTTAAAAAAAAAGG TTTTAATCA CTT TGATTAAAA GTTTATAAAAAATTT TERM 558 506904 - 506924 + F 71 -8.5 -2.92668 | opp_overlap 506904 506903, overlap 506903 CTTTAAAAAAAAAGG TTTTAATCA CTT TGATTAAAA GTTTATAAAAAATTT ribD1 506978 - 507403 + | riboflavin deaminase ribD2 507446 - 508069 + | riboflavin reductase nusB 508106 - 508537 + | transcription antitermination protein NusB dxs 510418 - 508592 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 559 509568 - 509584 + g 70 -3 -5.26875 | GGATTTAGCTCAGCA GGAAGA TAACC TTTTCC TTTTTTAGTTACAAG ispA 511324 - 510476 - | geranyltranstransferase yajR 512548 - 511376 - | hypothetical protein TERM 560 511940 - 511924 - G 86 -4.5 -5.91981 | opp_overlap 511924 AAAATCTAAAAAAAA CTTTATT TAA AACAAAG TTTAATACTTTTTTA TERM 561 512388 - 512342 - G 81 -9.8 -3.05384 | opp_overlap 512342 512356, overlap 512346 512354 512356 TTTCTTTCGATTGAA TTTATCAGATAATATTCCAAAT GGA ATTTGAAAAATTACCTGAGAAA TTCCATAAATACCCA TERM 562 512384 - 512346 - G 81 -10.6 -2.54896 | opp_overlap 512342 512356, overlap 512342 512354 512356 TTTCGATTGAATTTA TCAGATAATATTCCAAAT GGA ATTTGAAAAATTACCTGA GAAATTCCATAAATA TERM 563 512938 - 512923 - g 74 -9 -2.94708 | overlap 512908 512922 GACCTGCTAAACAAG CCAGCA AAAT TGCTGG AATACCTAAACCAGT yccK 512622 - 512966 + | hypothetical protein cyoE 513844 - 512987 - | protohaeme IX farnesyltransferase TERM 564 513341 - 513318 - G 70 -3.2 -5.33331 | overlap 513321 GAAATAGAATAAAAA TGAGACATTT GCCA AAATATCACA ATAACAAATAACAAT cyoD 514189 - 513872 - | cytochrome O ubiquinol oxidase subunit IV cyoC 514806 - 514189 - | cytochrome O ubiquinol oxidase subunit III cyoB 516791 - 514803 - | cytochrome O ubiquinol oxidase subunit I TERM 565 514839 - 514849 + g 91 -4 -6.08563 | opp_overlap 514839 AATATTTTTCCAATA TTGA TGC TCAA TTTTTTTTATCTCTT TERM 566 515891 - 515881 - G 75 -5.4 -4.82901 | CGTTTTTTAGAAAAA GTAG CCA CTAC CTCTGAAAATACACC cyoA 517686 - 516796 - | cytochrome O ubiquinol oxidase subunit II TERM 567 516886 - 516898 + g 84 -3.5 -5.77853 | overlap 516880 ATATTGGTTTTTAAT TTTAT TAA ATAAA TTTTTTTTAACACTT TERM 568 517927 - 517948 + H 77 -2.5 -6.13503 | gap 1, opp_overlap 517918 517916 517927 517932, overlap 517932 ATAATACTATCAAAA TAGCATAAAA AAA TTTTAT-CTA TTTTTTTTATTAATA bolA 517985 - 518299 + | BolA protein TERM 569 518474 - 518462 - g 72 -3.4 -5.21683 | ATGGAAAAAAATAAA GATG CAGGT CATC GTGTTACAATTAAGA TERM 570 518757 - 518741 - g 100 -6.7 -6.35605 | opp_overlap 518741 518744 GAAGATAAAAAAAAA GAATATT TTG AATATTC TGTAATTTACGAACT TERM 571 519061 - 519071 + G 78 -2.6 -5.78622 | opp_overlap 519052 519069, overlap 519052 AATCAATCATTTTGT TAAT GAC ATTA TTTTTTTTAAAATAA TERM 572 519430 - 519415 - g 72 -4.8 -4.93661 | overlap 519423 ATATCAAGAAGAAAA TTCTAA TATT TTAGAA AAAAAATACCACATG TERM 573 519713 - 519698 - g 72 -4.8 -4.88222 | ATTAAAATTGAAAAA CAAAAT TGGA ATTTTG AACGCTTTTTAAATT tig 518435 - 519763 + | trigger factor clpP 519898 - 520524 + | ATP-dependent Clp protease proteolytic subunit clpX 520623 - 521912 + | ATP-dependent protease ATP-binding subunit TERM 574 523173 - 523148 - g 75 -3.3 -5.43329 | AAAAATAAAATAAAA GGTCCTATT TTATGTTT AATAGGGCC ACCTGGTGTAGGAAA TERM 575 524099 - 524087 - g 77 -6.3 -4.72986 | opp_overlap 524087 GATTTTCATGAAAAA CATGA CAT TCATG TTCATGTTCCTGAAG lon 522104 - 524437 + | ATP-dependent protease LA TERM 576 524502 - 524475 - f 95 -4.8 -6.28967 | opp_overlap 524476 524478, overlap 524476 TATAAATAAAAAAAA CTTGGCTGACAA AGAA TCGTCAGCCTAT ATATTTTAATATAAT TERM 577 524501 - 524476 - f 80 -8.3 -4.3372 | opp_overlap 524476 524478, overlap 524475 ATAAATAAAAAAAAC TTGGCTGACAA AGAA TCGTCAGCCTA TATATTTTAATATAA TERM 578 524478 - 524499 + F 73 -8.7 -3.29568 | opp_overlap 524476 524475, overlap 524476 AAATAAAAAAAACTT GGCTGACAA AGAA TCGTCAGCC TATATATTTTAATAT TERM 579 524886 - 524872 - g 71 -7.2 -3.86031 | TCAATTAATTAATAA TGTTCT TTT AGAACA ATATGCAAAAAATAT TERM 580 525741 - 525722 - g 91 -2.2 -6.37666 | ATAAAACAAAAAAAA TCATTAGA TTTA TATAATGA ACTAAAAAATAAAAT TERM 581 525869 - 525851 - g 70 -3.2 -5.24129 | TGGTTTGATAAAAAA TCAATACC TAA AGTATTAA ATATTCCTATATTAA TERM 582 526033 - 526011 - g 85 -7.2 -4.94811 | overlap 526007 TTAAAAATAAAGAAA TTCAACATTT CGA AAATGTTAAA AAAAATATTATAAAA ppiD 524579 - 526450 + | peptidyl-prolyl cis-trans isomerase D TERM 583 527367 - 527323 - f 72 -3.3 -5.52986 | opp_overlap 527365, overlap 527349 527365 ATGTTATCAAAAAAA TTATTTTTAGATCAAAA AAACAAAAACA TTTTTATCTAAAAATAA ACACTTTATTGTTAA TERM 584 527366 - 527349 - f 71 -2.1 -5.86609 | opp_overlap 527365, overlap 527323 527365 TCAAAAAAACAAAAA CATTTTT ATCT AAAAATA AACACTTTATTGTTA mdl 527423 - 529192 + | multidrug resistance-like ATP-binding protein Mdl TERM 585 530594 - 530623 + GF 72 -6.6 -4.22927 | opp_overlap 530593 GATGCCTAAAGGTAT TTATTCCCTTCT AGGAGA AGAAGGTAATAA TTTATCTGTTGGTCA mdlB 529164 - 530936 + | multidrug resistance-like ATP-binding protein MdlB dnaX 531231 - 532316 + | DNA polymerase III subunits gamma and tau TERM 586 532612 - 532600 - f 78 -2.7 -6.07374 | ATAAAAAATAAAAAA TATGA CTT TCACA TTACAAAAAAGAGAT ybaB 532636 - 532965 + | hypothetical protein TERM 587 533005 - 533025 + F 80 -7.1 -4.82667 | opp_overlap 532999 533005 533009, overlap 533009 TATGCGAAATAAGTA TAAATTTAT TGA ATAAATTTA TTTTTACTATGATAA TERM 588 534235 - 534223 - g 70 -6.3 -4.12448 | opp_overlap 534221, overlap 534221 AAATAATGAAAAATA CCAAA TTT TTTGG AATCAATTCGGTCTC TERM 589 534681 - 534661 - g 72 -4.7 -4.97888 | overlap 534663 AAAAAAAGTTAAAAA CATACTTGG CAA CCAAGTAAA AGATGTAAGATTAAC TERM 590 534679 - 534663 - g 87 -9.5 -4.05905 | overlap 534661 AAAAAGTTAAAAACA TACTTGG CAA CCAAGTA AAAGATGTAAGATTA htpG 533111 - 534985 + | heat shock protein 90 TERM 591 535026 - 534993 - f 78 -4 -5.72254 | opp_overlap 534996, overlap 534995 534996 TTAAATAATAAAAAA CATGATTACTACTA TTATAT TAGTAGTAATCTTT AGATTAACTTATACA TERM 592 535024 - 534995 - f 74 -6.6 -4.47161 | opp_overlap 534996, overlap 534993 534996 AAATAATAAAAAACA TGATTACTACTA TTATAT TAGTAGTAATCT TTAGATTAACTTATA TERM 593 535023 - 534996 - f 79 -10.1 -3.24636 | opp_overlap 534996, overlap 534995 534993 AATAATAAAAAACAT GATTACTACTA TTATAT TAGTAGTAATC TTTAGATTAACTTAT TERM 594 534996 - 535023 + F 83 -10.1 -3.78811 | opp_overlap 534996 534995 534993 AATAATAAAAAACAT GATTACTACTA TTATAT TAGTAGTAATC TTTAGATTAACTTAT adk 535058 - 535705 + | adenylate kinase TERM 595 535741 - 535755 + F 70 -7.8 -3.322 | TGAACCTGTGACCTA CGGCTT AGA AGGCCG TTGCTCTATCCAGCT folD 535936 - 536793 + | methenyltetrahydrofolate cyclohydrolase cysS 538184 - 536790 - | cysteinyl-tRNA synthetase TERM 596 538239 - 538214 - H 80 -9.3 -3.81473 | opp_overlap 538214 538219, overlap 538219 AAAAATATATTTAAA GAAAATAATAT AAAT ATATTATTTTC TATATTACCAATGTG TERM 597 538214 - 538239 + H 75 -9.3 -3.08371 | opp_overlap 538214 538219, overlap 538219 AAAAATATATTTAAA GAAAATAATAT AAAT ATATTATTTTC TATATTACCAATGTG TERM 598 538434 - 538414 - H 81 -7.1 -5.04082 | GAAAGAATAATAAAA TATTTTTTT GTA AAAAAAATA GGGGTTAATAATGAA ybeD 538445 - 538708 + | hypothetical protein TERM 599 538775 - 538743 - T 75 -9.3 -3.15427 | opp_overlap 538734 538739 538750 538752 AATATTTTGTACTAA TATGGTACAGCTC TCTTTAG GAGCTGTACTATA AAACATATTTGTTTT TERM 600 538784 - 538804 + T 72 -8.5 -3.12446 | opp_overlap 538784 538783 538781 TACTATAAAACATAT TTGTTTTTA TAT TAAAAACAA TTGAATAACTTTATA TERM 601 538804 - 538784 - T 70 -8.5 -2.69458 | opp_overlap 538784, overlap 538783 538781 TACTATAAAACATAT TTGTTTTTA TAT TAAAAACAA TTGAATAACTTTATA cspE 539024 - 538815 - | cold shock protein CspE TERM 602 539273 - 539319 + r 83 -10.5 -3.63068 | gap 1, opp_overlap 539288, overlap 539288 AAAAAATAATTTATT TCAAGTATAAAAAAACCCGAAA AAAA TTTCGGGTTTTTTT-TCCTGGA TTTGACCTACTCTCA TERM 603 539288 - 539305 + r 100 -9.9 -5.86965 | opp_overlap 539288, overlap 539273 TCAAGTATAAAAAAA CCCGAAA AAAA TTTCGGG TTTTTTTTCCTGGAT TERM 604 539305 - 539288 - R 100 -9.9 -5.71983 | opp_overlap 539288 539273 TCAAGTATAAAAAAA CCCGAAA AAAA TTTCGGG TTTTTTTTCCTGGAT TERM 605 539534 - 539524 - R 76 -6.8 -4.62336 | opp_overlap 539524 AGTTTATTTTAAAAA CACC TCT GGTG TTGTAAGGTTAAGCC TERM 606 540224 - 540240 + r 73 -9.4 -2.53876 | opp_overlap 540214 CCAGACACTGTCTCT GTGCCG GATTA CGGCAC TAGGTTAGAATACCG TERM 607 541153 - 541169 + r 77 -8 -4.08546 | TTGGTTTTTCGGCGA GCAGGT TTTTC ACCTGC TTTATCGTTACTCAT TERM 608 542523 - 542535 + r 73 -4.9 -5.10163 | overlap 542532 TAAAGAGCTTTTTGT GTTAA ATG TTAAC TTTTCTTTTAAAGTT TERM 609 542589 - 542602 + r 71 -2.5 -5.73978 | opp_overlap 542589 TAAATTAGTATATAA TATTT TTAT AAATA TTTTTTATTTATCGT aroE 543659 - 542838 - | shikimate 5-dehydrogenase TERM 610 543007 - 542985 - G 93 -3.5 -6.23209 | opp_overlap 542985 542989 CCAATCAAAAAAAAA TGTATTATC TGTTT GATAATTCA TATCATAAAAGCATG TERM 611 543398 - 543412 + g 72 -5.7 -4.46267 | ACGTATTAACAGATT GAGCA ACTTC TGCTC TTTTAGTTAACTTAT yrdC 544179 - 543652 - | hypothetical protein TERM 612 543963 - 543976 + g 91 -3.9 -6.11392 | ATGGTCCAGGCCAAT GAAAA AAAA TTTTC TTTTTTTGTTTATTT smg 544750 - 544277 - | Smg protein TERM 613 544584 - 544604 + g 89 -7.7 -5.01732 | opp_overlap 544584 544582, overlap 544586 ATAGATGGAATAATA TTTTTCTTG TAA CAAGAAAGA TTTTTTAACCAACTT TERM 614 544881 - 544869 - H 75 -3.5 -5.69379 | opp_overlap 544869 ATATAATGAAAAAAA TTTTT ACT AAAAA ATATAATAAGTTTTT def 544994 - 545515 + | polypeptide deformylase TERM 615 546469 - 546441 - g 90 -3.3 -6.07627 | opp_overlap 546458, overlap 546444 546460 ATTTCTAAAAAAAAA TTATTTAAAATAG GAA CTATTTTATAAAA AAATATTTAATTTAT fmt 545523 - 546467 + | methionyl-tRNA formyltransferase TERM 616 546551 - 546523 - T 100 -8.9 -6.0458 | opp_overlap 546526 546531, overlap 546526 ATAAATTAAAAAAAA TAAGCAAACGGTA TAT TTCCGTTTGCTTT AAAATTATATTTTTT TERM 617 546526 - 546548 + T 83 -10.6 -3.72485 | opp_overlap 546523 546526, overlap 546531 AATTAAAAAAAATAA GCAAACGGTA TAT TTCCGTTTGC TTTAAAATTATATTT TERM 618 546548 - 546526 - T 95 -10.6 -5.01676 | opp_overlap 546526 546531, overlap 546523 AATTAAAAAAAATAA GCAAACGGTA TAT TTCCGTTTGC TTTAAAATTATATTT rplQ 546986 - 546594 - | 50S ribosomal protein L17 rpoA 548020 - 547031 - | DNA-directed RNA polymerase subunit alpha rpsD 548669 - 548049 - | 30S ribosomal protein S4 rpsK 549090 - 548695 - | 30S ribosomal protein S11 rpsM 549464 - 549108 - | 30S ribosomal protein S13 rpmJ 549674 - 549558 - | 50S ribosomal protein L36 secY 551013 - 549700 - | preprotein translocase subunit SecY TERM 619 550261 - 550283 + g 86 -7 -5.05601 | opp_overlap 550247, overlap 550247 550262 ACGACGACCTTGTTG ACGTTGTGCA TAA TGTACAACGA TTTTTCTCTGTCCTC TERM 620 550262 - 550282 + g 88 -10.5 -3.62276 | opp_overlap 550247, overlap 550247 550261 CGACGACCTTGTTGA CGTTGTGCA TAA TGTACAACG ATTTTTCTCTGTCCT rplO 551458 - 551024 - | 50S ribosomal protein L15 rpmD 551642 - 551463 - | 50S ribosomal protein L30 rpsE 552155 - 551652 - | 30S ribosomal protein S5 TERM 621 552070 - 552082 + g 70 -4.7 -4.7254 | AAAGAAAATATTCGA CCGCC TTT GACGG TTTTTGATACACGAT rplR 552539 - 552171 - | 50S ribosomal protein L18 rplF 553077 - 552541 - | 50S ribosomal protein L6 rpsH 553480 - 553088 - | 30S ribosomal protein S8 rpsN 553814 - 553509 - | 30S ribosomal protein S14 rplE 554371 - 553832 - | 50S ribosomal protein L5 TERM 622 554040 - 554024 - G 75 -8.7 -3.33671 | AGAGTGACTTGATAA TCCGCGA AAA TCGCGAA TACGTGGAACAGCAA rplX 554700 - 554386 - | 50S ribosomal protein L24 rplN 555094 - 554726 - | 50S ribosomal protein L14 TERM 623 555161 - 555201 + r 89 -5 -6.09133 | gap 1, opp_overlap 555163 555168, overlap 555162 555163 555168 555200 CTGACATTTTATGAA CAT-AAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTGATA TTTTTTTTTAAAATA TERM 624 555162 - 555199 + r 82 -7.9 -4.69028 | opp_overlap 555163 555168, overlap 555161 555163 555168 TGACATTTTATGAAC ATAAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTGA TATTTTTTTTTAAAA TERM 625 555163 - 555198 + r 93 -11.4 -3.3979 | opp_overlap 555163 555168, overlap 555162 555161 555168 GACATTTTATGAACA TAAAACATGAGCAGAC GTGA GTTTGTTCATGTTTTG ATATTTTTTTTTAAA TERM 626 555168 - 555193 + r 89 -9.1 -4.66395 | opp_overlap 555168 555163, overlap 555163 555162 555161 TTTATGAACATAAAA CATGAGCAGAC GTGA GTTTGTTCATG TTTTGATATTTTTTT rpsQ 555460 - 555209 - | 30S ribosomal protein S17 rpmC 555657 - 555460 - | 50S ribosomal protein L29 TERM 627 555611 - 555625 + g 86 -2.2 -6.24157 | TGTAAAAGTTCTGTG TAAAGA TCT TTTTTA TTTTTTTTTCTAAAT rplP 556067 - 555657 - | 50S ribosomal protein L16 rpsC 556789 - 556088 - | 30S ribosomal protein S3 TERM 628 556264 - 556278 + g 70 -8.6 -2.752 | opp_overlap 556267 556269, overlap 556269 TTGCGCGTAATGTAT GAAGAG GAA CTCTTC CTTCTCTATACCACT rplV 557140 - 556808 - | 50S ribosomal protein L22 rpsS 557454 - 557176 - | 30S ribosomal protein S19 rplB 558295 - 557474 - | 50S ribosomal protein L2 rplW 558612 - 558310 - | 50S ribosomal protein L23 rplD 559214 - 558609 - | 50S ribosomal protein L4 rplC 559861 - 559232 - | 50S ribosomal protein L3 rpsJ 560203 - 559892 - | 30S ribosomal protein S10 TERM 629 560488 - 560456 - R 95 -12.3 -3.38966 | opp_overlap 560460 560465, overlap 560448 560460 560465 TATAATACATATTAA TCAAGAAAAGAGCAT CTT ATACTCTTTTCTTAA TAAATTCAACTTTGA TERM 630 560484 - 560460 - R 83 -10.9 -3.4493 | opp_overlap 560460 560465, overlap 560456 560448 560465 ATACATATTAATCAA GAAAAGAGCAT CTT ATACTCTTTTC TTAATAAATTCAACT TERM 631 560460 - 560484 + r 73 -8.7 -3.22091 | opp_overlap 560460 560456 560448 560465, overlap 560465 ATACATATTAATCAA GAAAAGAGCAT CTT ATACTCTTTTC TTAATAAATTCAACT tufB 561719 - 560535 - | elongation factor Tu fusA 563895 - 561787 - | elongation factor G TERM 632 563945 - 563927 - R 79 -6.8 -5.02074 | TTAGGTTTTAAAAAA TTGAGTCT CAT AAACTCAA TTGAGATAATTGCCT rpsG 564480 - 564010 - | 30S ribosomal protein S7 rpsL 564896 - 564522 - | 30S ribosomal protein S12 yheL 565317 - 565030 - | tRNA 2-thiouridine synthesizing protein B yheM 565688 - 565329 - | hypothetical protein yheN 566093 - 565707 - | hypothetical protein fkpA 566901 - 566176 - | FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor argD 568590 - 567364 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 633 567618 - 567638 + g 74 -2 -5.63857 | overlap 567612 TAAAACGTTTATTAA TAATATTT AATTC AGATATTA TTTTTTTAGATTTTT TERM 634 568861 - 568851 - H 78 -2.6 -6.18768 | opp_overlap 568851 568860, overlap 568860 AAAATATAAAAAAAA TATA ATA TATA TAAATTATATTTTTA TERM 635 569144 - 569128 - g 74 -2.3 -5.56568 | opp_overlap 569131, overlap 569131 ATATCATTAAAAAAA CAACTAA TAT TTAGTTT TATACTTACTATTAT TERM 636 569747 - 569762 + G 77 -6.2 -4.64676 | TTACAAGCATGTCTA CAATAC TTAT GTATTG TTTTATTAAAAGTGA TERM 637 570002 - 570018 + G 73 -3.1 -5.46276 | opp_overlap 570005 TAATTAGTTCAAATA TATTATA TGG TATAGTA TTTTTTCTATCTATT yhfC 568906 - 570072 + | hypothetical protein trpS 571141 - 570134 - | tryptophanyl-tRNA synthetase TERM 638 570952 - 570942 - G 76 -4 -5.40464 | opp_overlap 570942 570951 CAGGATAAATAAAAA GATA TTG TATC TAGTATAGATTTATT rpe 571850 - 571164 - | ribulose-phosphate 3-epimerase TERM 639 572555 - 572574 + r 78 -6.6 -4.81551 | opp_overlap 572541 572542 572554 572555, overlap 572542 ATTGTTTTAAAATAG CAATATTT TAAA AAATATTG TTTTTACTCTCCATA aroB 573825 - 572734 - | 3-dehydroquinate synthase TERM 640 573247 - 573232 - G 78 -2.6 -5.87996 | overlap 573233 TAACCAACAAAAAAA CGTTTT ATCA AAAACA ATAGCATATTTGATT aroK 574364 - 573843 - | shikimate kinase I TERM 641 574969 - 574957 - R 75 -3.5 -5.86061 | TCTCACCAAAAAAAA TAAAA CAC TTTTA TAAAACAGATTCCAA deoD 575671 - 574967 - | purine nucleoside phosphorylase deoB 576938 - 575715 - | phosphopentomutase prfC 578576 - 576996 - | peptide chain release factor 3 TERM 642 578123 - 578147 + g 77 -7.9 -4.2461 | CATCAAGAATTTCTA TTGGATCTCGA CTA TCGCGATCTAA TTTATTAATAAAAGT TERM 643 578962 - 578950 - R 81 -6.3 -5.48054 | AGCAAAATGAAAAAA TCATC TCA GATGA CACAGAAAAAACTTA yhgI 580265 - 579687 - | hypothetical protein TERM 644 580349 - 580369 + r 71 -8.5 -2.97029 | opp_overlap 580349, overlap 580348 580351 TAAGTTATAAATAAA TATTTTCTT TAA AAGAAAATA CTTTAGTTAATAAAA TERM 645 580369 - 580349 - R 87 -8.5 -4.59089 | opp_overlap 580348 580349 580351 TAAGTTATAAATAAA TATTTTCTT TAA AAGAAAATA CTTTAGTTAATAAAA TERM 646 580538 - 580518 - R 75 -4.1 -5.67711 | overlap 580520 580522 CAAATAAAATAAAAA TTTATCTTT ATC AAAGATAGA TAAAACAATTAAATT TERM 647 580829 - 580846 + r 100 -11.3 -5.24551 | ATGAAAAAATGCGTT GCCCCAA AAAA TTGGGGC TTTTTATTGATTTGA ssb 581393 - 580878 - | single-strand binding protein TERM 648 581986 - 581976 - H 81 -2.6 -6.32976 | AAAAAAATAAAAAAA TTTT CAA AAAA TGACTCAAATAGATC dnaB 582063 - 583460 + | replicative DNA helicase gshB 583707 - 584669 + | glutathione synthetase yqgF 584680 - 585087 + | hypothetical protein yggS 585205 - 585807 + | hypothetical protein TERM 649 586093 - 586075 - g 71 -7.6 -3.69447 | opp_overlap 586074 586079, overlap 586073 TTATTAAAAAATACA TCAATAAA AAA TTTATTGA ATGGTATTAAAAAAA yggW 585850 - 586980 + | hypothetical protein yggH 587706 - 586987 - | hypothetical protein TERM 650 588117 - 588107 - gH 73 -5.4 -4.7064 | AAGAAAAAATATAAA GGAA TAT TTCC GGATCAATTTTCAAA mutY 587804 - 588856 + | A/G-specific adenine glycosylase TERM 651 588858 - 588835 - gf 75 -7 -4.23434 | opp_overlap 588835, overlap 588849 GAAAATACTTGAAAA TTTTAAAAAA AATA TTTTTTAAAA AAAGGAGTATTAAAA yggX 588828 - 589109 + | hypothetical protein TERM 652 589901 - 589882 - g 80 -5.2 -5.27477 | opp_overlap 589882, overlap 589895 ATGTTAATCAAAAAA TAAAAAAA AATA TTTTTTTA TATTCAAAAAACAAT TERM 653 589940 - 589913 - g 80 -5.8 -5.1287 | opp_overlap 589936, overlap 589936 TTTATATTCAAAAAA CAATAATAATTT AAAG AAACTATTATCG TTTTTAAAACAATAT murI 589203 - 589991 + | glutamate racemase sbcB 591423 - 590182 - | exonuclease I yeeX 591503 - 591811 + | hypothetical protein TERM 654 591915 - 591941 + F 77 -2.5 -6.06723 | TATATATACCAAAAA TTTTTATGTGT GTCAA ATATATAAAAA TTTTTTTTTAAAAAA TERM 655 591958 - 591942 - f 76 -5.3 -5.14985 | overlap 591943 TCAAATATATAAAAA TTTTTTT TTA AAAAAAA ATAAAATTTCTAAAA pyrE 592193 - 592834 + | orotate phosphoribosyltransferase dut 593310 - 592846 - | deoxyuridine 5'-triphosphate nucleotidohydrolase cysQ 594151 - 593354 - | CysQ protein TERM 656 593685 - 593695 + g 76 -4 -5.38549 | ACATTAATCTTTTTC TTTG ATC CAAA TTTTTCTTCTTTCCA rplI 594590 - 594138 - | 50S ribosomal protein L9 rpsR 594866 - 594639 - | 30S ribosomal protein S18 rpsF 595333 - 594992 - | 30S ribosomal protein S6 TERM 657 595033 - 595051 + g 73 -4.6 -5.00884 | TTAATTTTAAAATAG GTGATAGT TCG ACTATTGC TTTTTTCACAGACAT vacB 597736 - 595499 - | VacB protein TERM 658 596368 - 596394 + g 71 -7.5 -3.65542 | opp_overlap 596374, overlap 596367 TTTTAATTCGAAGGT TAGAATCTAAA ACAAA TTTAGGTTCTA TATTTTCAAAATAAA TERM 659 596906 - 596940 + g 75 -5.2 -4.95806 | overlap 596903 AAAAGGGAAATGTCG TAAATCTGTACGATTT TTA AAATCATATTGATTTA TTTTTCTACTAATTT purA 599125 - 597824 - | adenylosuccinate synthetase TERM 660 598859 - 598869 + g 76 -4 -5.5454 | AACAAAAATATTATG TGTT TCT AACA TTTTTATTTCTTTAA hflC 600107 - 599175 - | FtsH protease regulator HflC hflK 601330 - 600110 - | HflK protein TERM 661 600331 - 600348 + g 86 -2.1 -6.28401 | AAAACATTGGGTTAT TATTTGT ATCA ATAAATA TTTTTTTATTTTTTC miaA 602395 - 601487 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 662 601549 - 601563 + g 78 -5.8 -4.82518 | opp_overlap 601549 601548 601551 CTAAAATAGTAGAAG TAGAAT GGT ATTCTA TTTTGTTAATATTTT TERM 663 602280 - 602260 - G 70 -8.3 -3.05616 | opp_overlap 602262, overlap 602259 602262 GATGATTATATAAAT CAGAAAAGC TTG GCTTATCTG TTCCAATATCCATTC mutL 604187 - 602433 - | DNA mismatch repair protein MutL TERM 664 602796 - 602783 - G 75 -5.3 -4.93877 | TTTTATTAAATAAAA TCAAG TATT CTTGA GATGTAAGATTAATT TERM 665 603092 - 603080 - G 70 -2 -5.40072 | opp_overlap 603080 TTTTTTTTAAAAAAA TTGA AGATA TCAA TGTTAAAAAAGTAGG TERM 666 604242 - 604232 - R 75 -4 -5.60993 | opp_overlap 604232 CTGTTTATAAAAAAA GAAT AGC ATTC TTTCAAATTTTGTAA mtlD 605444 - 604287 - | mannitol-1-phosphate 5-dehydrogenase TERM 667 604422 - 604434 + g 77 -4.9 -5.22006 | opp_overlap 604433 AGATGAAAGCTCTAT TGATT CCA AATCA TTTTTATTATGGTAA TERM 668 604704 - 604717 + g 74 -2.4 -5.74122 | TTCCATGGCAGATCT TACG ATAACA CGTA TTTTTTTGTCTGATA mtlA 607384 - 605486 - | PTS system mannitol-specific IIABC component TERM 669 607445 - 607461 + r 72 -5.3 -4.86862 | opp_overlap 607437 607444 607445 607448, overlap 607437 607444 CTTCAAATTAAATAT TAATAAT TAA ATTATTA TTTTAATTTTTTAAA pgi 609208 - 607559 - | glucose-6-phosphate isomerase TERM 670 608250 - 608232 - G 83 -4.7 -5.68023 | TCAGAACCAAAAAAA TTAGTAT ACCAA ATACTAA TTAAGGCTAATAATA TERM 671 608508 - 608492 - G 91 -6.6 -5.42514 | opp_overlap 608492 TGATAAAGCAAAAAA GTGCTT ATCTA AAGCAC TTTGATCTTGTGAAT TERM 672 608492 - 608508 + g 70 -6.6 -3.9749 | opp_overlap 608492 TGATAAAGCAAAAAA GTGCTT ATCTA AAGCAC TTTGATCTTGTGAAT TERM 673 608816 - 608829 + g 71 -3.9 -5.00616 | opp_overlap 608812, overlap 608812 ATGAATAACCATTTT TGAAA AATT TTTCA TTTTTTCCAACAACG TERM 674 609310 - 609284 - H 84 -5.4 -5.75538 | opp_overlap 609286 609288 609289 609309, overlap 609278 609288 609298 609308 609309 TCTAAAAAATAAAAA TATATTTTTAAA TAT TTTAAAAATTTA AAATTATTTTATTTT orn 609522 - 610076 + | oligoribonuclease TERM 675 610126 - 610103 - f 78 -7 -4.75063 | opp_overlap 610103, overlap 610116 AGAAAACTTGAAAAA TTTATTTTAT ATAT ATAAAATAAA TTTATAGTATAAAAA TERM 676 610103 - 610126 + F 70 -7 -4.0162 | opp_overlap 610103 610116 AGAAAACTTGAAAAA TTTATTTTAT ATAT ATAAAATAAA TTTATAGTATAAAAA TERM 677 610206 - 610190 - f 74 -9.5 -2.62616 | overlap 610193 TCAGTTGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCAA TERM 678 610474 - 610462 - f 85 -3.5 -6.26417 | opp_overlap 610462 610463, overlap 610463 TATCAGAAAAAAAAA TTTTT TAA AAAAA ATAATTTTTATTATA amiB 610528 - 611241 + | N-acetylmuramoyl-L-alanine amidase precursor TERM 679 611251 - 611239 - T 72 -3.5 -5.60864 | opp_overlap 611245 611246, overlap 611230 611245 611246 TATATATTAAAAAAA TAAAA GTT TTTTA AAAAATATTAATTGT rpmE 611567 - 611349 - | 50S ribosomal protein L31 TERM 680 611775 - 611790 + H 76 -4.8 -5.44198 | TGTATATGTTTTATT TTAATG TCTA CATTAA TTTTTATTGTTTATT hslV 612173 - 612685 + | ATP-dependent protease peptidase subunit hslU 612698 - 614029 + | ATP-dependent protease ATP-binding subunit TERM 681 614043 - 614081 + F 72 -4.1 -5.41143 | opp_overlap 614080, overlap 614034 614080 AATTTTTATTCAAAA TATTTATCCATTATTAT TTTTT ATTAAAATGGATGAATA TTTTTTTAAAAAATA TERM 682 614430 - 614414 - g 86 -10.9 -2.85838 | overlap 614411 AATTAACACTAAGTA TTCCTGG ATA CCAGGAA AAAGAATTAGATATA ibpA 614236 - 614709 + | 16 kDa heat shock protein A TERM 683 614765 - 614721 - f 100 -8.2 -5.81622 | gap 1, opp_overlap 614731, overlap 614728 ATAAAATTAAAAAAA TA-TAAAATCACTGCGCTTAT AAAA ATAAGCACAGTGATCTAACTA AAAATTATTGAGAAT TERM 684 614757 - 614728 - f 100 -14.5 -5.11475 | opp_overlap 614731, overlap 614721 TAAAAAAATATAAAA TCACTGCGCTTAT AAAA ATAAGCACAGTGA TCTAACTAAAAATTA TERM 685 615344 - 615354 + G 82 -5.4 -5.4505 | opp_overlap 615344 AAAAATTCTTTAAAT GGAA GAA TTCC TTTTTTATTAAGAAA fpr 614786 - 615544 + | ferredoxin-NADP reductase yjeA 616536 - 615562 - | lysyl-tRNA synthetase TERM 686 616481 - 616460 - G 70 -3.1 -5.27709 | opp_overlap 616460 616464 TTAGAAAAAAATAAA CGAATATTA GAAA TAATATTTG ATCTTTTGATTAAAT TERM 687 616969 - 616980 + G 71 -4.4 -4.87008 | overlap 616967 GTATATTTTTACTTT CTTC TAAA GAAG TTTCTTTTATATCTT kdtB 616608 - 617105 + | lipopolysaccharide core biosynthesis protein kDatB TERM 688 617152 - 617122 - T 81 -9.9 -3.72893 | opp_overlap 617124, overlap 617124 GATTTTTTTATCAAA TATAGTAGGGTAT GTTAT ATACCCTACTATT TATTTTTAACATTAT TERM 689 617150 - 617124 - T 95 -12.5 -3.44848 | opp_overlap 617124, overlap 617122 TTTTTTTATCAAATA TAGTAGGGTAT GTTAT ATACCCTACTA TTTATTTTTAACATT TERM 690 617124 - 617150 + T 100 -13.2 -4.88293 | opp_overlap 617124 617122 TTTTTTTATCAAATA TAGTAGGGTATG TTA TATACCCTACTA TTTATTTTTAACATT yba3 618295 - 617192 - | hypothetical protein yba4 618626 - 618288 - | hypothetical protein TERM 691 618344 - 618357 + g 74 -2.5 -5.66684 | overlap 618335 618332 TATCACTATTATCAG TAATA TTGT TATTA TTTTTTTCTAAATTA TERM 692 618524 - 618538 + g 78 -7.2 -4.53475 | ATACAGTTTGATTCT TGTTTG TTT CAAACA TTGTTTTTATGGCAT TERM 693 618662 - 618676 + H 72 -4.4 -5.47399 | opp_overlap 618664 AATTATTTTTTAGTA TATTTT TAT AAAATA TTTTTTTGAACTTAA yhiQ 618781 - 619521 + | hypothetical protein TERM 694 619563 - 619526 - T 71 -5.1 -5.01732 | gap 1, opp_overlap 619529 619531, overlap 619529 AACCTTTTTAAAAAA TA-ATAGGAGTACATTTC TTT AACACGTACTCCTATCTA ATCAAATAATTTTAC TERM 695 619559 - 619529 - T 87 -8.4 -4.61482 | opp_overlap 619529 619531, overlap 619526 CTTTTTAAAAAATAA TAGGAGTACATTTC TTT AACACGTACTCCTA TCTAATCAAATAATT pitA 621076 - 619604 - | low-affinity inorganic phosphate transporter TERM 696 619829 - 619851 + g 78 -5.7 -4.99643 | gap 1, overlap 619827 AGCTGTTATTTGAGC TGACATA-GC TTGT GCATATGTCA TTCTTTTTTTTCCTA TERM 697 620193 - 620172 - G 79 -8.9 -3.49102 | opp_overlap 620171 ATATTTTTTATAGAA TTGTAAGAT TGAG ATCTTACAA CTAAATTATTGATTT TERM 698 620242 - 620260 + g 80 -6.2 -4.89339 | TATTTGATTTTTTTA TATTTTTT TCT AAAAAATA TTTTTCTAAATGATT TERM 699 620457 - 620476 + g 76 -4.3 -5.28942 | opp_overlap 620457, overlap 620440 ATTCTAATTAGAAAT GGTGGTA TTTTTT TACCATC TTTTTCTTTACGCTC TERM 700 621246 - 621227 - R 81 -5.2 -5.61596 | opp_overlap 621227 ATTTTTATAAAAAAA TTAAAAAT ATTT ATTTTTAA AATTTTTTTGTTTTA ynfM 622459 - 621227 - | hypothetical protein TERM 701 621300 - 621290 - G 71 -4 -5.16472 | AAAAACTCCAAAAAA TAAC ATT GTTA TAATAAAAACAGAAA dapF 623347 - 622493 - | diaminopimelate epimerase TERM 702 623017 - 623034 + g 70 -2.1 -5.42605 | TAGTTAAAGGTTTTT TTTTAGT ACTA ATTAAAA TTTTCTTTTTATTAG cyaY 623535 - 623885 + | CyaY protein TERM 703 623979 - 623959 - f 75 -2.7 -5.93252 | opp_overlap 623952 623962, overlap 623952 623962 TTTAAAAATAAAAAA TATTTTTAT TTA ATAAAATTA TAAAAAATGCATCTA hemC 624014 - 624958 + | porphobilinogen deaminase TERM 704 625803 - 625823 + T 72 -2.7 -5.78622 | opp_overlap 625803 TTCGCCGTTTTCAAA TAAAAAAAT ATA ATTTTCTTA TTTTTTTTGGGGTGG rho 627455 - 626196 - | transcription termination factor Rho trxA 627911 - 627585 - | thioredoxin TERM 705 628099 - 628120 + r 90 -7.5 -5.63504 | ATTTTATATCTTCTT TTTTTTAGA TGAA TCTAAAAAA TTTTTTTCTCCCATT rep 630050 - 628113 - | ATP-dependent DNA helicase Rep TERM 706 628456 - 628439 - G 80 -9.9 -2.81922 | overlap 628438 628436 628441 TATCATCTAAAATAT CACGGAT TGTC ATCCGTG TAACAATTTGAAATA ilvC 631592 - 630120 - | ketol-acid reductoisomerase TERM 707 630186 - 630202 + g 70 -2.3 -5.42514 | overlap 630172 GCATCCGATAATTTC TATAGGA TGA TTCTGTA TTTTTTGATTTATCC ilvD 633493 - 631640 - | dihydroxy-acid dehydratase TERM 708 633007 - 633018 + g 70 -3 -5.25154 | opp_overlap 633002 633007, overlap 633002 TAGCATCAACTAAAT CAAT TTTT ATTG TTTTATTATTTTTTT yfhO 633980 - 635194 + | hypothetical protein iscU 635225 - 635608 + | scaffold protein TERM 709 635623 - 635652 + F 74 -7.3 -4.1922 | overlap 635618 635625 ACTTTATAATTATTT GGTGTTGAAAGAA TATT TTCTTTCAACATA TTATATTTTATTTTT TERM 710 635625 - 635650 + F 95 -12.1 -3.63424 | overlap 635623 635618 TTTATAATTATTTGG TGTTGAAAGAA TATT TTCTTTCAACA TATTATATTTTATTT hscB 635703 - 636227 + | chaperone protein HscB TERM 711 637722 - 637707 - g 95 -3.4 -6.4753 | opp_overlap 637708, overlap 637708 GTAAAGAAAAAAAAA TTATTA TTGA TAATAA TATTACATTAAAAAA TERM 712 637724 - 637708 - g 70 -5.3 -4.44858 | opp_overlap 637708, overlap 637707 TAAAGAAAAAAAAAT TATTATT GAT AATAATA TTACATTAAAAAATT TERM 713 637762 - 637738 - g 76 -4.5 -5.23316 | opp_overlap 637730, overlap 637730 637755 637758 TATTACATTAAAAAA TTTAAATATTT CTC AAATATTGAAA GATTCATTAAAACAT hscA 636239 - 638074 + | heat shock protein HscA fdx 638074 - 638409 + | ferredoxin 2fe-2s engA 639767 - 638406 - | GTP-binding protein EngA TERM 714 638692 - 638708 + g 76 -8.1 -3.82097 | opp_overlap 638695, overlap 638684 638695 CTAATCTTTCTTTTA GAATCTT CAT AAGATTC TTTGATAGATTTAAA TERM 715 639188 - 639214 + g 91 -3.8 -5.95166 | opp_overlap 639194, overlap 639190 639191 TTCCAACATTTGGTC GACCAATAAAAG CTA CTTTTATTGCTA TTTTTTTTAATTCCG TERM 716 639190 - 639212 + g 74 -6.4 -4.61485 | opp_overlap 639194, overlap 639188 639191 CCAACATTTGGTCGA CCAATAAAAG CTA CTTTTATTGC TATTTTTTTTAATTC TERM 717 639191 - 639211 + g 85 -9.9 -3.34451 | opp_overlap 639194, overlap 639190 639188 CAACATTTGGTCGAC CAATAAAAG CTA CTTTTATTG CTATTTTTTTTAATT yfgM 640441 - 639860 - | hypothetical protein TERM 718 639909 - 639961 + g 77 -2.9 -5.74288 | overlap 639912 TTAATAATTTCTTTA GATGCATTAGAATCTTCAATAAAAA GAC TTTTTTTCCAAGATTTTATTGCTTC TTTTTTATTGTTTAT