TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.690292 %AT, 1545962 nt, 9301 terms. Intergenic: 0.745227 %AT, H2T: 121770 nt, 989 terms; T2T: 38037 nt, 871 terms; H2H: 38049 nt, 676 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|121582657|ref|NC_008770.1| Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence (length 37473) TERM 1 411 - 439 + G 72 -5.4 -4.72986 | opp_overlap 417 419, overlap 413 AACGCAAGGAGTTTT TAGAAGCATTGA AATTA TCAATGTTTCAA TTTTTAATAAAAATG CJJ81176_pVir0001 1 - 678 + | VirB8 CJJ81176_pVir0002 678 - 1748 + | VirB9 TERM 2 1766 - 1736 - f 88 -5.5 -5.50723 | GGATCAAAACAAAAA GGCTAAGAAATGA AAAAA TCATTTTTAAGCC TAAGTCTTGCAACAA TERM 3 2321 - 2298 - g 77 -8.9 -3.59023 | opp_overlap 2298 TTTATAGAATGATAA GAGCAGGAA GATTAA TTCCTGCCC TTTTAACGAGTGCTA TERM 4 2298 - 2321 + G 72 -6.7 -4.10161 | opp_overlap 2298 TTTATAGAATGATAA GAGCAGGAA GATTAA TTCCTGCCC TTTTAACGAGTGCTA CJJ81176_pVir0003 1745 - 2881 + | VirB10 CJJ81176_pVir0004 2892 - 3092 + | hypothetical protein trbB 3085 - 4038 + | conjugative transfer regulon protein CJJ81176_pVir0006 4048 - 4455 + | hypothetical protein TERM 5 5187 - 5203 + G 81 -3.7 -5.55698 | opp_overlap 5186, overlap 5189 CATTGGGTTACAAGT GCGAAAA CTC TTTTCAC TTTTTTTGCATTATA TERM 6 5604 - 5581 - g 72 -2.5 -5.48063 | overlap 5584 ATTTAAGAGAAAAAA GAATTACTA TGTATG TAGTAATAC AAACCGAAGATATGG TERM 7 5937 - 5916 - g 70 -3.8 -5.10968 | gap 1, opp_overlap 5917, overlap 5918 5929 5933 ATGAATACAGAAAAA GA-CGCTAA AGAAA TTAGCGATC TAATCGGCGATTTTA TERM 8 5934 - 5918 - g 72 -6.6 -4.16832 | opp_overlap 5917, overlap 5916 5929 5933 GAATACAGAAAAAGA CGCTAA AGAAA TTAGCG ATCTAATCGGCGATT TERM 9 5973 - 5989 + G 85 -8.1 -4.42806 | GAAAAAACATCATCA TCAAAAG GAA CTTTTGA TTTCTTTAAAAGTAA TERM 10 6308 - 6278 - g 76 -6.3 -4.67982 | CTTTACTCAAGAAAA TTCAAGCTCTAAA CAAAT TTTCGAACTTGAA GAACTAGGAATAAAG CJJ81176_pVir0007 4452 - 6338 + | hypothetical protein TERM 11 6362 - 6342 - f 100 -6.9 -5.54403 | opp_overlap 6347 6357 6360, overlap 6348 AAAAAAGAATAAAAA TCAAAGGTT TAA AGCCTTTGA TCTAAACTAAGTCTT TERM 12 6357 - 6407 + F 100 -14.4 -3.95378 | opp_overlap 6342 6348 6369, overlap 6360 6364 6374 TCAAAGGTTTAAAGC CTTTGATCTAAACTAAGTCTTCTA AAA TAGAAGGTTTAGTTTAGGTTATAG TTGTTTAGAGTATGA TERM 13 6360 - 6404 + F 100 -14.7 -3.03085 | opp_overlap 6342 6348 6369, overlap 6357 6364 6374 AAGGTTTAAAGCCTT TGATCTAAACTAAGTCTTCTA AAA TAGAAGGTTTAGTTTAGGTTA TAGTTGTTTAGAGTA TERM 14 6364 - 6400 + F 100 -15.5 -2.78358 | opp_overlap 6348 6369, overlap 6360 6357 6374 TTTAAAGCCTTTGAT CTAAACTAAGTCTTCTA AAA TAGAAGGTTTAGTTTAG GTTATAGTTGTTTAG CJJ81176_pVir0008 6457 - 6627 + | hypothetical protein TERM 15 6979 - 6955 - g 75 -7.2 -4.04318 | gap 1 CTTATACAGGACAAA CTT-CCGCCCT TTTA AGAGCGGTAAG CGAACTTAACGGCTA TERM 16 7062 - 7023 - g 71 -6.6 -3.9941 | overlap 7026 TTTTTGACAATGAAA CAAGCTAATTTTTTAGGG GGGA CACTAAAAAAACAACTTG ATGAAAACGGCAAGC CJJ81176_pVir0009 6702 - 7583 + | hypothetical protein TERM 17 7945 - 7931 - g 75 -5.7 -4.74518 | overlap 7927 AAGTATTAAAATAAA CCCTT TAGGT AAGGG TAAGGCTATGAAAAC CJJ81176_pVir0010 7728 - 7997 + | hypothetical protein TERM 18 8200 - 8186 - g 100 -10 -4.68424 | GAATTTACTTAAAAA CGGCTA TCC TAGCCG AGAAGAGCTTTTTAA TERM 19 9035 - 9008 - g 89 -10.6 -3.74749 | overlap 9001 AGGAGAAAGTTTAAA GCACGGAATAGC TAAC GCTATTCCAGGC TCTCAAAGTCTTAGA CJJ81176_pVir0011 8007 - 9155 + | hypothetical protein TERM 20 9300 - 9290 - g 70 -4 -4.87893 | AAGTTTAAGTAAAAA CTTT TTA AAAG AATATGAAAACTACG TERM 21 10584 - 10572 - g 71 -5.5 -4.40561 | overlap 10576 CTTTTGGAAAAAGAA GGCAT AGG ACGCC CTAGCACTTATGCAA CJJ81176_pVir0012 9177 - 11144 + | DNA topoisomerase I TERM 22 11492 - 11519 + G 71 -5.7 -4.42464 | gap 1 TTGATTTGTTTGTAT GCGGATTTTTCA AAAAG TGAAGA-TCCGC TTTATTTAAAAGATT CJJ81176_pVir0013 11351 - 11716 + | hypothetical protein TERM 23 11716 - 11702 - f 73 -2.2 -5.72207 | overlap 11703 TTTAAAGCAAAAAAA CTAAAA CTA TTTTAA AAGGAGAATAAAAAA TERM 24 11875 - 11885 + G 70 -5.4 -4.54026 | opp_overlap 11875 CGAAGCTTACACAAG TTGG ATA CCAA TTATTTTGTTTGGGC TERM 25 12137 - 12123 - g 84 -8.6 -4.19947 | CAAAAGAAGCAGAAA CTATGC AAA GCATAG ATGAAAATCAAGCTG CJJ81176_pVir0014 11732 - 12190 + | hypothetical protein TERM 26 12181 - 12201 + F 89 -9.8 -4.4078 | opp_overlap 12180 12179 12192 AGATGATGAAAATTT GCCCTTTT AAATA AAAAGGGC TTTTAATTAAAAAAG CJJ81176_pVir0015 12326 - 12499 + | hypothetical protein TERM 27 12524 - 12513 - f 78 -3 -5.8096 | GATAAAAAAGAAAAA CAAT GAAA ATTG CATAAAAAATAGGGT CJJ81176_pVir0016 12550 - 13122 + | hypothetical protein TERM 28 13299 - 13309 + GF 70 -5.4 -4.58283 | TTGTGAAATTATTTA TGGA AAC TCCA TTTTTCAAAGAATTA TERM 29 13356 - 13377 + GF 76 -3.7 -5.40072 | opp_overlap 13357 13358, overlap 13357 13358 AGATTGATTTTGAAA ATTGGGATT TTAT AATCCCAGA TTTTTTTAAAAAGCA TERM 30 13357 - 13376 + GF 72 -7.2 -3.83561 | opp_overlap 13357 13358, overlap 13356 13358 GATTGATTTTGAAAA TTGGGATT TTAT AATCCCAG ATTTTTTTAAAAAGC TERM 31 13375 - 13358 - gf 71 -8.5 -3.06694 | opp_overlap 13357 13356 13358, overlap 13357 ATTGATTTTGAAAAT TGGGATT TTAT AATCCCA GATTTTTTTAAAAAG TERM 32 13358 - 13375 + GF 71 -8.5 -2.89655 | opp_overlap 13358 13357, overlap 13357 13356 ATTGATTTTGAAAAT TGGGATT TTAT AATCCCA GATTTTTTTAAAAAG CJJ81176_pVir0017 13085 - 13564 + | hypothetical protein CJJ81176_pVir0018 13589 - 13942 + | hypothetical protein CJJ81176_pVir0019 13932 - 14057 + | hypothetical protein TERM 33 14111 - 14101 - f 70 -4 -5.1417 | opp_overlap 14101, overlap 14095 TGATAAAATCAAAAA TCAT TCT ATGA TTTTATGCACAGAAA CJJ81176_pVir0020 14157 - 14702 + | hypothetical protein CJJ81176_pVir0021 14699 - 15112 + | hypothetical protein TERM 34 15177 - 15191 + G 74 -2.2 -5.61689 | overlap 15179 TATTGCTTTGATTTA TTTTTT TGG AAAAGA TTTTTTGTTAGTTTT CJJ81176_pVir0022 15109 - 15516 + | hypothetical protein CJJ81176_pVir0023 15527 - 15850 + | hypothetical protein TERM 35 16006 - 16025 + G 81 -3.6 -5.626 | opp_overlap 16010, overlap 16008 ATTCTTTTTTATTTT AATATTCC AAAT GGAATATC TTTTTTTATAAAATC TERM 36 16008 - 16023 + G 74 -6.2 -4.45201 | opp_overlap 16010, overlap 16006 TCTTTTTTATTTTAA TATTCC AAAT GGAATA TCTTTTTTTATAAAA CJJ81176_pVir0024 15919 - 16152 + | hypothetical protein TERM 37 16404 - 16379 - f 72 -7.9 -3.42228 | opp_overlap 16379, overlap 16374 16378 TAAGTGAAAATAAAT TTTTTATTAAA AATT TTTAATAAAAA GAAAAAATTATAGAA TERM 38 16836 - 16819 - g 76 -2.8 -5.50499 | GGACATTTAAAAAAA TTTGAT TATGTT ATCAAA CAAGGAGAAGCTTAT TERM 39 17175 - 17206 + G 73 -5.5 -4.57569 | gap 1 TATCAAATTACTCGA TTTTGTTATTTTTC AAAGA GAAAAATA-CAAAA TTTTTACACAAATGG CJJ81176_pVir0025 16642 - 17310 + | para protein TERM 40 17476 - 17454 - g 79 -5 -5.22104 | opp_overlap 17459 17468 17470, overlap 17459 17468 GAAAAAAGAAGAAAA TAAAAGAAAT ACA ATTTCTTTTG AAATATATTTAGAAG TERM 41 17471 - 17459 - g 77 -4.9 -5.33124 | opp_overlap 17459 17468 17470, overlap 17454 17468 AAGAAGAAAATAAAA GAAAT ACA ATTTC TTTTGAAATATATTT TERM 42 17804 - 17789 - g 72 -6.2 -4.21644 | AAAAAGCAAATCAAA CTCATT CTAC AATGAG AGCTTATGCTTATGC CJJ81176_pVir0026 17320 - 17949 + | hypothetical protein TERM 43 17984 - 17967 - T 73 -7.1 -4.13 | opp_overlap 17963 17967 ATATATAATGATAAA GTTAGTT TAAA AACTAAC TTCTATTCTTTCCCT TERM 44 17967 - 17984 + T 71 -7.1 -3.91066 | opp_overlap 17967, overlap 17963 ATATATAATGATAAA GTTAGTT TAAA AACTAAC TTCTATTCTTTCCCT CJJ81176_pVir0027 18809 - 17973 - | RepE replication protein, putative TERM 45 19580 - 19594 + H 75 -4.4 -5.12707 | opp_overlap 19575, overlap 19575 TAGTGAGAAGTTTTT TAAAAA TAT TTTTTA TTTTTTAAGCTTTAG TERM 46 19812 - 19825 + H 73 -2.4 -5.74684 | TTTGTTTTGTTTTTA TAGC CACTAA GCTA TTTTTATTTTTCTTA TERM 47 20029 - 20018 - g 71 -3 -5.24449 | CAGAAATTGAAAAAA CTTT AGAA AAAG AAAAAAGCAGTGAAG TERM 48 20981 - 20969 - g 85 -3.5 -5.77856 | opp_overlap 20969 AACAAACCAAAAAAA TTATT GAA AATAA TATTAAAAAAACAAT CJJ81176_pVir0028 19930 - 21051 + | hypothetical protein TERM 49 21050 - 21072 + G 82 -5 -5.42198 | AAGGAATGTCATTAT GAAAAAAAAT AAA ATATTTTTTC TTTTCTTTTTTGCAA CJJ81176_pVir0029 21048 - 21926 + | hypothetical protein TERM 50 22048 - 22058 + G 71 -3.2 -5.33405 | AGAAAAATAAGTTTA GCAG TTA TTGC TTTTTCTTTAATAAA CJJ81176_pVir0030 22030 - 22812 + | cpp45 TERM 51 23309 - 23278 - g 71 -6.8 -3.89334 | gap 1, opp_overlap 23285 23289, overlap 23280 23289 AAAGACTATATTAAA GATTTAAGAAAGCAA ACT TTGCTTTCTTATA-C AAAGGACGAGAATGT TERM 52 23308 - 23280 - g 83 -10.5 -3.5218 | opp_overlap 23285 23289, overlap 23278 23289 AGACTATATTAAAGA TTTAAGAAAGCAA ACT TTGCTTTCTTATA CAAAGGACGAGAATG TERM 53 23285 - 23303 + G 83 -10.4 -3.28712 | opp_overlap 23280 23278 23289, overlap 23289 ATATTAAAGATTTAA GAAAGCAA ACT TTGCTTTC TTATACAAAGGACGA TERM 54 23363 - 23334 - g 72 -6.7 -4.15453 | opp_overlap 23336 GAATGTAGCCGAAAA TATTTTAAATCTT CAAA ACGATTTAAAATA TTACACCAAAAAGAG CJJ81176_pVir0031 22843 - 23562 + | hypothetical protein CJJ81176_pVir0032 23562 - 24815 + | hypothetical protein CJJ81176_pVir0033 24799 - 25227 + | hypothetical protein CJJ81176_pVir0034 25609 - 25484 - | hypothetical protein TERM 55 25782 - 25772 - g 72 -2.6 -5.36441 | overlap 25774 GGGCGAGAGAAAAAA TATT TAT AATA AAGACGCTTACGCTT CJJ81176_pVir0035 25704 - 26048 + | hypothetical protein CJJ81176_pVir0036 26062 - 26370 + | hypothetical protein TERM 56 26407 - 26440 + G 76 -6.1 -4.60924 | opp_overlap 26407 TTAGCAAAAAGACTA GCAAAAAAGGCTC GAGAAAAA GAGCTATTTTTGC TTTTTAAGGAATTTA CJJ81176_pVir0037 26380 - 26601 + | hypothetical protein CJJ81176_pVir0038 26614 - 27009 + | pTet39 TERM 57 27233 - 27244 + G 71 -3 -5.18371 | AGGGTGTTTATTATG CAAT TTTC ATTG TTTTATTTTGTAGCC CJJ81176_pVir0039 27082 - 27492 + | hypothetical protein CJJ81176_pVir0040 27489 - 27920 + | hypothetical protein CJJ81176_pVir0041 28128 - 28313 + | hypothetical protein CJJ81176_pVir0042 28325 - 28495 + | hypothetical protein TERM 58 28594 - 28572 - f 74 -6.4 -4.39386 | opp_overlap 28572 CCCAAACTATCAAAA GAAATGCA AGAAAAG TGCATTTC TTTAATGGAAAAACA CJJ81176_pVir0043 28575 - 28703 + | hypothetical protein TERM 59 29226 - 29236 + G 70 -4 -4.8622 | AAAAAGCCGTAGGAG CAAA AAA TTTG TTTTTAGTTAGAGAA CJJ81176_pVir0044 29105 - 29470 + | hypothetical protein CJJ81176_pVir0045 29507 - 29842 + | hypothetical protein TERM 60 29852 - 29840 - f 73 -3.5 -5.34365 | TTACAACAAGAAAAA TAAAT AAA ATTTA CAATGAAGCAATTTT CJJ81176_pVir0046 30039 - 30401 + | hypothetical protein TERM 61 30569 - 30547 - f 71 -8.6 -3.05224 | opp_overlap 30546, overlap 30546 30563 ATAGGGTTTTAAAAG CTTAAGGTTT GAT AAACCTTAAA AATGATTTTTTTAAA TERM 62 30720 - 30707 - g 81 -3.9 -5.64328 | AAGAAAAAAATAAAA TTGTT AAAA AACAA AAAATATATTGGATT CJJ81176_pVir0047 30634 - 31038 + | hypothetical protein CJJ81176_pVir0048 31284 - 31676 + | hypothetical protein TERM 63 31702 - 31682 - T 74 -5.3 -4.90381 | opp_overlap 31682 31683 31685, overlap 31685 TGCAAGATAATAAAA CAAGCGGGA AAG TCCCGCTAT CTTTCTAATTCTTTT TERM 64 31683 - 31701 + T 81 -8.8 -3.66867 | opp_overlap 31682 31685, overlap 31682 31685 GCAAGATAATAAAAC AAGCGGGA AAG TCCCGCTA TCTTTCTAATTCTTT TERM 65 31699 - 31685 - T 95 -11.4 -4.53142 | opp_overlap 31683 31682 31685, overlap 31682 AAGATAATAAAACAA GCGGGA AAG TCCCGC TATCTTTCTAATTCT TERM 66 31685 - 31699 + T 87 -11.4 -3.39017 | opp_overlap 31685 31682, overlap 31683 31682 AAGATAATAAAACAA GCGGGA AAG TCCCGC TATCTTTCTAATTCT CJJ81176_pVir0049 33474 - 31903 - | hypothetical protein TERM 67 32637 - 32625 - G 71 -4.9 -4.7497 | opp_overlap 32623 32625 TGTATTGATTAAAAA GATTT ATG AAATC TAGTCTTTTTTGCTT TERM 68 33567 - 33619 + r 100 -8.1 -5.40072 | gap 1, opp_overlap 33586 33610, overlap 33568 TAACCCTTTATAGTG GCTTTTTTTGTGTATTAAA-GCCT AAAATA AGGCATTTAAAACACAAAAAAGGA TTTTTTTACAAAAAA TERM 69 33568 - 33618 + r 95 -11.6 -3.83561 | gap 1, opp_overlap 33586 33610, overlap 33567 AACCCTTTATAGTGG CTTTTTTTGTGTATTAAA-GCCT AAAATA AGGCATTTAAAACACAAAAAAGG ATTTTTTTACAAAAA TERM 70 33663 - 33635 - R 93 -7.7 -5.24129 | opp_overlap 33640 33651 33656, overlap 33640 33651 TTTTTTTACAAAAAA TAAAATCAAAAAA TAC TTTTTTGATTTTT CATTCTGCGAATGTA TERM 71 33658 - 33640 - R 100 -7.6 -5.49579 | opp_overlap 33640 33651 33656, overlap 33635 33651 TTACAAAAAATAAAA TCAAAAAA TAC TTTTTTGA TTTTTCATTCTGCGA TERM 72 33640 - 33658 + r 90 -7.6 -4.93365 | opp_overlap 33640 33635 33651, overlap 33651 33656 TTACAAAAAATAAAA TCAAAAAA TAC TTTTTTGA TTTTTCATTCTGCGA CJJ81176_pVir0050 34103 - 33855 - | hypothetical protein TERM 73 34140 - 34112 - H 78 -4.1 -5.4148 | TAAACAATTAAAAAA TCATTATTTTTAA CAA TAAAAAATAATAA AAAATAATAAATCAA CJJ81176_pVir0051 34305 - 34610 + | hypothetical protein TERM 74 34687 - 34661 - g 74 -7.3 -3.99719 | gap 1, opp_overlap 34668 AAAACTAAGATCAAA GGCTTAACCAGC ACTA GCTGGTTT-GCC TTAATCATTTTAGGT TERM 75 34668 - 34681 + G 77 -8.1 -3.79445 | opp_overlap 34661 AGATCAAAGGCTTAA CCAGC ACTA GCTGG TTTGCCTTAATCATT CJJ81176_pVir0052 34610 - 34852 + | hypothetical protein CJJ81176_pVir0053 34862 - 37330 + | VirB4 SEQUENCE gi|121612099|ref|NC_008787.1| Campylobacter jejuni subsp. jejuni 81-176, complete genome (length 1616554) dnaA 1 - 1323 + | chromosomal replication initiation protein TERM 1 2094 - 2113 + G 73 -3.7 -5.31275 | opp_overlap 2093 2092 GGAAATGCAAAAACT TTTCTAT GAAAAA ATAGAAA TTTTTTATGATCAAA TERM 2 2478 - 2464 - g 72 -2.8 -5.35721 | overlap 2466 ATAGAAGAAGAAAAA TTCACT TTA AGTGTA AATGAACCTAATTCA dnaN 1483 - 2550 + | DNA polymerase III subunit beta TERM 3 2678 - 2642 - g 79 -7.3 -4.386 | GAAGCTGTTAGAAAA CGCCCAGGTATGTATAT AGG AGATACAAACATAGGCG GACTTCATCATATGA TERM 4 3285 - 3272 - g 74 -5.3 -4.88687 | opp_overlap 3272 TTAAATAAAAAAGAA GCTTT AACT AAAGC AATTTTCTTTAGCGT gyrB 2579 - 4888 + | DNA gyrase subunit B TERM 5 4893 - 4921 + T 100 -10.5 -5.18371 | opp_overlap 4894 4902, overlap 4894 TGGATGTGTAAATTT ATCATTGAAGAAA TGA TTTCTTCAATGAG TTTTGTTTTGTAAGA TERM 6 4920 - 4894 - T 100 -14 -2.64803 | opp_overlap 4893 4894, overlap 4902 GGATGTGTAAATTTA TCATTGAAGAAA TGA TTTCTTCAATGA GTTTTGTTTTGTAAG TERM 7 4894 - 4920 + T 100 -14 -3.69938 | opp_overlap 4894 4902, overlap 4893 GGATGTGTAAATTTA TCATTGAAGAAA TGA TTTCTTCAATGA GTTTTGTTTTGTAAG CJJ81176_0030 5255 - 4914 - | hypothetical protein CJJ81176_0031 6496 - 5258 - | molybdopterin oxidoreductase family protein TERM 8 5885 - 5903 + g 77 -7.4 -4.31065 | opp_overlap 5884 5886, overlap 5880 5886 AACTCCTCTACTAAT AGGTGAAG TTT CTTCACCA TTTAATTTTGTATCT TERM 9 5886 - 5902 + g 85 -10.9 -3.17012 | opp_overlap 5884 5886, overlap 5885 5880 ACTCCTCTACTAATA GGTGAAG TTT CTTCACC ATTTAATTTTGTATC TERM 10 5902 - 5886 - G 85 -10.9 -3.13522 | opp_overlap 5886 5885 5880, overlap 5884 ACTCCTCTACTAATA GGTGAAG TTT CTTCACC ATTTAATTTTGTATC TERM 11 6433 - 6411 - G 78 -4.2 -5.45802 | TTCTCAAAAGAAAAA TTTGACAATA CAC TAATGCCAAA TAAACCAAGTCCTAT TERM 12 6538 - 6594 + H 73 -5.7 -4.59919 | opp_overlap 6551 6566, overlap 6531 6532 6542 6566 TCTTTTATTTTATTA TAAATTTTAAAAATTTAAATAATTAAT ATA ATTAATTATTTAAATTAAAAAAATTAA TTATTTTTATAATTT TERM 13 6581 - 6551 - H 100 -11.6 -4.72486 | opp_overlap 6532 6542 6538 6566, overlap 6566 TATAAATTTTAAAAA TTTAAATAATTAAT ATA ATTAATTATTTAAA TTAAAAAAATTAATT TERM 14 6900 - 6888 - g 70 -4.1 -4.91084 | AAGAAAATTTAAAAA CAGCT CTT AGCTA TATACTCTTAGGAGC CJJ81176_0032 6707 - 8008 + | Na+/H+ antiporter family protein TERM 15 8866 - 8848 - g 78 -9.6 -3.13403 | overlap 8846 GCTTTTCGACTAATA CCTTCCCA AGT TGGGAAAG AGCCCATCCAAACCG TERM 16 9938 - 9928 - g 78 -4 -5.44721 | ATTATTCTAAAAAAA CTTT AGA AAAG GCTTTAGATGAGCTT TERM 17 11019 - 11046 + G 73 -9.2 -2.64416 | opp_overlap 11019, overlap 11010 11018 TTAATGGGCTTTAAA GTCTATCCTTGG ATAG CTAAGGCTAGAC ATTCTACTGCAGGTG TERM 18 12533 - 12519 - g 86 -7.2 -5.28826 | AAATTCGATAAAAAA GACTTT TTT AAAGTC ATGCCAAGAGATTAT gltB 8142 - 12629 + | glutamate synthase, large subunit CJJ81176_0034 12649 - 14370 + | hypothetical protein TERM 19 14777 - 14761 - g 71 -4.5 -4.77036 | TGTGAGTATCAAAAA TAATGAA TTA TCCATTA TAGAAAATGCTTTTA gltD 14381 - 15826 + | glutamate synthase subunit beta rnhB 16402 - 15827 - | ribonuclease HII TERM 20 16435 - 16416 - R 76 -6.4 -4.58685 | opp_overlap 16419, overlap 16419 AAATTTTTCTAAAAA GAAGGGCA AAAA TGCCCTTT TATTCTACTGTGATA TERM 21 16432 - 16419 - R 83 -8.1 -4.40561 | opp_overlap 16419, overlap 16416 TTTTTCTAAAAAGAA GGGCA AAAA TGCCC TTTTATTCTACTGTG TERM 22 16419 - 16432 + r 89 -8.1 -4.82819 | opp_overlap 16416 16419 TTTTTCTAAAAAGAA GGGCA AAAA TGCCC TTTTATTCTACTGTG comEA 16674 - 16435 - | competence protein ComEA rbr 17290 - 16739 - | rubrerythrin TERM 23 19152 - 19142 - g 70 -5.4 -4.57569 | overlap 19147 GTATTGCCTCAAAAA GAAG TGC CTTC AAGATGGCTTAGAAT ilvD 17546 - 19222 + | dihydroxy-acid dehydratase TERM 24 19217 - 19239 + T 100 -13.6 -4.03815 | opp_overlap 19220, overlap 19213 19220 GCGGTTTTAGATATG GAATGAAAGG TTT CCTTTCATTC TTCTATTTCTTTGGT TERM 25 19220 - 19236 + T 87 -9.5 -4.10632 | opp_overlap 19220, overlap 19217 19213 GTTTTAGATATGGAA TGAAAGG TTT CCTTTCA TTCTTCTATTTCTTT TERM 26 19236 - 19220 - T 78 -9.5 -3.15999 | opp_overlap 19220 19217 19213 GTTTTAGATATGGAA TGAAAGG TTT CCTTTCA TTCTTCTATTTCTTT CJJ81176_0040 19383 - 19234 - | inner membrane protein YagU CJJ81176_0041 19630 - 19349 - | membrane protein, putative, degenerate CJJ81176_0042 20948 - 19722 - | hypothetical protein TERM 27 20379 - 20399 + g 74 -6.9 -4.31698 | opp_overlap 20367 AAAGCGAAGTCTTCC GCTAAGATC GAT GATTTTGGC TATTTTTTGATTTAA CJJ81176_0043 21025 - 21699 + | exsB protein TERM 28 21717 - 21688 - T 93 -10.9 -4.01786 | opp_overlap 21687 21686 21684 21683, overlap 21690 AAAGATAAGATTAAA TATAAGTCCTAGT TTTC ACTAGGACTTAAA GCTTAGTTTAAAGTA TERM 29 21715 - 21690 - T 100 -13.5 -3.57873 | opp_overlap 21687 21686 21684 21683, overlap 21688 AGATAAGATTAAATA TAAGTCCTAGT TTTC ACTAGGACTTA AAGCTTAGTTTAAAG CJJ81176_0044 23246 - 21720 - | DsbB family disulfide bond formation protein TERM 30 21804 - 21794 - G 74 -5.4 -4.87803 | opp_overlap 21794 CATCTTTAAAGAAAA TGCT TCT AGCA TTAGTGATAGAGCTT TERM 31 21872 - 21882 + g 72 -5.4 -4.7497 | overlap 21869 GATCAATTACGGCAA TCAC ATT GTGA TTTTTGCTAAGTGCA TERM 32 22241 - 22260 + g 72 -8 -3.54424 | opp_overlap 22245, overlap 22245 CATTAGGATTTTTTG CAAATCTT AAGA AAGATTTG TTTGAGCCCATAAGA CJJ81176_0045 23425 - 23258 - | hypothetical protein TERM 33 23526 - 23499 - R 85 -10.1 -3.66095 | AAATTTTTATTGAAA TTTCACGTTAA GTTAAA TTAACGTGAAA AAAGTTACTGAAAGC CJJ81176_0046 25285 - 23531 - | methyl-accepting chemotaxis protein TERM 34 23963 - 23981 + g 76 -8.9 -3.53811 | ATGTTCGCCTGCTCT TGCAGCT TCAAT AGCTGCA TTTAGGGCAAGTAAA ccpA-1 26213 - 25299 - | cytochrome c551 peroxidase CJJ81176_0048 27155 - 26277 - | fumarylacetoacetate hydrolase family protein CJJ81176_0049 28169 - 27267 - | RNA pseudouridine synthase family protein purB-1 28247 - 29575 + | adenylosuccinate lyase TERM 35 30574 - 30584 + G 72 -5.4 -4.82901 | TTTCCCTGCTTTATG GATC AAT GATC TTTTTATGAAGAGAG nrdA 29591 - 31960 + | ribonucleotide-diphosphate reductase subunit alpha TERM 36 31994 - 31964 - T 76 -7.8 -3.6761 | opp_overlap 31970, overlap 31962 31965 31970 GGTTGCCAATAAATA CTAAAACCCAAT GAAAAAT ATTGGGTTTTAA GAGATTAAGAATTGT TERM 37 31993 - 31965 - T 73 -9.1 -2.80244 | opp_overlap 31970, overlap 31964 31962 31970 GTTGCCAATAAATAC TAAAACCCAAT GAAAAAT ATTGGGTTTTA AGAGATTAAGAATTG CJJ81176_0052 33384 - 31999 - | sodium/dicarboxylate symporter thyX 34127 - 33504 - | FAD-dependent thymidylate synthase TERM 38 35384 - 35370 - g 75 -4.3 -5.26907 | opp_overlap 35370 CAAGAGAAAATAAAA TTCCT TTTTT AGGAA TTTGTTTAGGTATGC pyrG 34247 - 35878 + | CTP synthetase TERM 39 36231 - 36211 - g 72 -8.3 -3.27164 | overlap 36213 CAGTAGATAATGGAA TAGCTGCTC TTG AAGCAGCCA AACTCTGTAAAGAAA TERM 40 36229 - 36213 - g 73 -8.7 -3.19511 | overlap 36211 GTAGATAATGGAATA GCTGCTC TTG AAGCAGC CAAACTCTGTAAAGA TERM 41 36714 - 36696 - g 70 -6 -4.21351 | overlap 36679 AAAGATTTTAATAAA GCTTTAGA ATA TCTAGAGC AAATTGTTAGTTTTA recJ 35865 - 37436 + | single-stranded-DNA-specific exonuclease RecJ TERM 42 37447 - 37429 - f 74 -6.2 -4.49556 | opp_overlap 37429, overlap 37443 TTGTTATTAAAGAAA TTTTATAA AAT TTATAAAA TTTTTATTTATTATT TERM 43 37429 - 37447 + F 100 -6.2 -5.52807 | opp_overlap 37429 37443 TTGTTATTAAAGAAA TTTTATAA AAT TTATAAAA TTTTTATTTATTATT TERM 44 37643 - 37657 + G 70 -8.6 -2.58544 | overlap 37642 GTTCTATTGATAGTG CTGTTG CCA CAACAG GTTATACGGCTGGAG ansA 37522 - 38568 + | L-asparaginase TERM 45 38612 - 38589 - T 87 -10.4 -3.62518 | opp_overlap 38584 38583 TTAAATATTTCTAAA CTTAGGGAAA TTAT CTTCCCTAAG TCAAGCCTTTTAATC TERM 46 38863 - 38893 + T 72 -3.4 -5.30686 | opp_overlap 38887, overlap 38864 ATTTTATAAATTAAC TCTTTTGGTTTTTA TTT TATAAACTAAAAGC TTTTTTATAAATCTT TERM 47 39088 - 39110 + T 79 -7.9 -3.85891 | opp_overlap 39088 TCTAATAATTAAAAA GATTAAAAG CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 48 39110 - 39088 - T 95 -7.9 -4.99435 | opp_overlap 39088 TCTAATAATTAAAAA GATTAAAAG CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 49 39138 - 39119 - T 72 -8 -3.31322 | TTTAATCTTTCATAA CTTTTTCT TTGA AGAAAAAG ATTAAACTATCTATA TERM 50 39174 - 39138 - T 77 -5.3 -5.06414 | opp_overlap 39145 TTCTTTGAAGAAAAA GATTAAACTATCTATAA TTT TTATGGAGAGTTTGATC CTGGCTCAGAGTGAA TERM 51 40636 - 40653 + T 74 -9.1 -3.07291 | opp_overlap 40636 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 52 41120 - 41140 + T 78 -6.9 -4.56187 | overlap 41122 TAATATATATACTTC CTTTAGGTT TTA AACCTAATG TTCTTTTTAATTATC TERM 53 41122 - 41138 + T 79 -8.1 -3.86437 | overlap 41120 ATATATATACTTCCT TTAGGTT TTA AACCTAA TGTTCTTTTTAATTA TERM 54 41678 - 41661 - T 91 -11.3 -3.66803 | opp_overlap 41660 41659, overlap 41654 GCGCAAGAGGGCAAA CCCAGTG CTTG CACTGGG GGTTGTAGGACTGCA TERM 55 44463 - 44473 + T 70 -5.4 -4.57341 | AATAAAGCATCACTT CCTT GTT AAGG TTTTTAAGAAAGCTT CJJ81176_0061 44694 - 44542 - | hypothetical protein TERM 56 46806 - 46783 - g 78 -6.8 -4.62904 | gap 1 AAAGATCTCCAAAAA CTCCAG-GATG GAC CATCGCTAGAG ATGATGATGGAAGAT CJJ81176_0063 45264 - 47234 + | hypothetical protein TERM 57 47239 - 47259 + F 79 -9 -3.5594 | opp_overlap 47239 47238, overlap 47240 TTTTAAAATAAAATT TTCGCCCA TTTTT TGGGCGAG TTTAAGGAGTAAATT TERM 58 47240 - 47258 + F 78 -10.3 -2.73243 | opp_overlap 47239 47238, overlap 47239 TTTAAAATAAAATTT TCGCCCA TTTTT TGGGCGA GTTTAAGGAGTAAAT CJJ81176_0064 47275 - 49344 + | cytochrome c family protein TERM 59 49373 - 49342 - f 95 -11.2 -4.2828 | gap 1, opp_overlap 49333 49348, overlap 49348 GTGGATTTATTAAAA TAATAATTGCCTAGA TTT TCTAGGCAATT-TTA AATGAAAGGATTTGA TERM 60 49348 - 49368 + F 100 -12.7 -4.18018 | opp_overlap 49342 49348 TTATTAAAATAATAA TTGCCTAGA TTT TCTAGGCAA TTTTAAATGAAAGGA TERM 61 49368 - 49348 - f 100 -12.7 -4.24149 | opp_overlap 49348, overlap 49342 TTATTAAAATAATAA TTGCCTAGA TTT TCTAGGCAA TTTTAAATGAAAGGA CJJ81176_0065 49388 - 49972 + | hypothetical protein TERM 62 49957 - 49988 + F 74 -6.8 -4.20932 | opp_overlap 49957 TTTTCTAGCATACAA GGAAAAAAATGTTT AAGA AAATCTTTTTTTCC TTTTGGATGAGTCTT TERM 63 50575 - 50601 + G 73 -6 -4.62336 | ACAACAATGAAAATG TTTTACCTTTTA GAT TAGGAGGTGAAA TTTTTGCACTCAACT CJJ81176_0066 49965 - 52670 + | cytochrome c biogenesis protein TERM 64 52697 - 52672 - T 100 -13.5 -3.8709 | AAAGTCCTGCATAAA TTTACCCTTGA AATT TCAAGGGTAAA TAAGAAGTTAGAATT ggt 54375 - 52705 - | gamma-glutamyltransferase TERM 65 53215 - 53235 + g 93 -10.5 -3.89956 | opp_overlap 53220 CGCATTGATCGTATA GGTAATGCT TAC AGCATTGCC TTTGCTATCTAGTAC TERM 66 53473 - 53494 + g 70 -5.3 -4.67943 | gap 1 CATTATGTGTAAAGT TTTAGAGCTT GCA AAGC-CTAAA TTTTCTATATTGGCA TERM 67 55185 - 55199 + G 70 -4.2 -4.94992 | TTTTAAATGGCGATA GCACTT TAA AAGGGC TTTTTGTGGATTTAA TERM 68 55597 - 55576 - g 85 -7.5 -4.94902 | opp_overlap 55569 55576, overlap 55583 TAATGATGATAAAAA TTTGAAATT TTTA AATTTCAAA AAAATCCCTGATTTT TERM 69 56687 - 56666 - g 81 -8.1 -4.15881 | AAAGACTATAAAGAA GGCTTTTAC ACAG ATAAAAGCC GCATCAACCAAGAGA TERM 70 57938 - 57928 - g 75 -4 -5.27023 | ATTTGAAAAAGAAAA GATA GTG TATC CGTGTATAATGGCAA CJJ81176_0068 54605 - 58339 + | type II restriction-modification enzyme TERM 71 59173 - 59191 + G 72 -4.6 -4.89393 | TTTTTGATTTATTTA GTTGGAAA TTT TTTACAAC TTTTTATGACGTTTA CJJ81176_0069 58339 - 59223 + | hypothetical protein TERM 72 59843 - 59826 - g 75 -4.2 -5.31275 | opp_overlap 59826, overlap 59838 CTTTATGACAAAAAA TTTTGC AGAAAA GCAAAA GTCTATTATTTTTGC TERM 73 60370 - 60383 + G 74 -2.4 -5.52986 | GCTTTGTTATCTCGC GGTA GAAAAA TACC TTTTTTTAATAAAAT TERM 74 60386 - 60413 + G 73 -8.8 -3.20349 | opp_overlap 60383 60398, overlap 60384 60387 GTAGAAAAATACCTT TTTTTAATAAAA TATC TTTTATTAAAAA TATTCCATTTACCGG TERM 75 60615 - 60605 - g 76 -2.6 -5.60993 | GCTTCGATAAAAAAA TATT TGG AATA ATGCAAGCAATACGA CJJ81176_0070 59461 - 60903 + | transglycosylase domain-containing protein CJJ81176_0071 61018 - 62559 + | putative integral membrane protein TERM 76 62551 - 62578 + T 73 -8.5 -3.2812 | overlap 62550 62552 62555 AAAAATTCCATAGTG CCAAGCTAAGC CTTAAA GCTTAGCTTGA ATTTTATCATCAATC TERM 77 62552 - 62577 + T 88 -12 -2.5639 | overlap 62551 62550 62555 AAAATTCCATAGTGC CAAGCTAAGC CTTAAA GCTTAGCTTG AATTTTATCATCAAT TERM 78 62555 - 62574 + T 72 -7.9 -3.42658 | overlap 62552 62551 62550 ATTCCATAGTGCCAA GCTAAGC CTTAAA GCTTAGC TTGAATTTTATCATC CJJ81176_0072 63289 - 62588 - | hypothetical protein TERM 79 63270 - 63253 - G 70 -6.3 -4.12942 | overlap 63254 TCAAACTTGCTAAAA CTATGGC TAAA GCCATAA AGATATTATTTGTTT CJJ81176_0073 64487 - 63276 - | Bcr/CflA subfamily drug resistance transporter TERM 80 64029 - 64011 - G 70 -3.8 -5.09204 | overlap 64013 ATACTCTAACAAAAA TCCCCCAA AAG TTGGTGAA AGCATAGGAGCAAGA TERM 81 64814 - 64803 - g 71 -2.2 -5.35721 | ATAGAACAAGAAAAA CTCA TAAA CGAG CAAGTAAGCCAAAAG TERM 82 64875 - 64851 - g 72 -4.3 -5.1417 | TTAGAAAAGCAAAAA TTTGAACAAGA ACT TCTCGCGCAAA AGCAAAATTTCCAAA CJJ81176_0074 64590 - 65939 + | hypothetical protein TERM 83 65970 - 65928 - T 100 -12.2 -4.34771 | opp_overlap 65933 65934 65936, overlap 65933 GAAAATTTAGCAAAA GATGAGGATTAATTTTGGGC TTA GCCCAAAATTAATCATTCTC CTGGGAAGTGATTTG TERM 84 65965 - 65933 - T 100 -15.1 -2.96321 | opp_overlap 65933 65934 65936, overlap 65928 TTTAGCAAAAGATGA GGATTAATTTTGGGC TTA GCCCAAAATTAATCA TTCTCCTGGGAAGTG TERM 85 65933 - 65965 + T 100 -15.1 -3.4072 | opp_overlap 65928 65933, overlap 65934 65936 TTTAGCAAAAGATGA GGATTAATTTTGGGC TTA GCCCAAAATTAATCA TTCTCCTGGGAAGTG TERM 86 65934 - 65964 + T 100 -18.6 -2.64218 | opp_overlap 65933 65928, overlap 65933 65936 TTAGCAAAAGATGAG GATTAATTTTGGGC TTA GCCCAAAATTAATC ATTCTCCTGGGAAGT TERM 87 65936 - 65962 + T 100 -15.4 -2.86271 | opp_overlap 65933 65928, overlap 65934 65933 AGCAAAAGATGAGGA TTAATTTTGGGC TTA GCCCAAAATTAA TCATTCTCCTGGGAA CJJ81176_0075 67006 - 65963 - | cytochrome c family protein CJJ81176_0076 67831 - 67184 - | hypothetical protein TERM 88 67759 - 67786 + g 86 -10 -3.74077 | opp_overlap 67759 67760, overlap 67760 GTAAGGCTTCGATAA TGCTTAGGAATT TTAA GATTCCTAAGCG TTTAAGTATATAAAG TERM 89 67760 - 67785 + g 85 -11.3 -2.84125 | opp_overlap 67759 67760, overlap 67759 TAAGGCTTCGATAAT GCTTAGGAATT TTAA GATTCCTAAGC GTTTAAGTATATAAA TERM 90 67785 - 67760 - G 78 -10.6 -2.57881 | opp_overlap 67760 67759, overlap 67759 TAAGGCTTCGATAAT GCTTAGGAAT TTTAAG ATTCCTAAGC GTTTAAGTATATAAA typA 69639 - 67831 - | GTP-binding protein TypA TERM 91 68008 - 68023 + g 70 -6.2 -4.17002 | overlap 68017 ATCGCTTCCACTTGC TCTTAC ATTG GTAAGA TTCTTTCCTTTGATA TERM 92 68342 - 68363 + g 70 -5.1 -4.564 | gap 1 TCAAGCCTTGTTTGT CCATCGC-CC GTT GGTGCCATGG TTTTCATTTCAGCTT TERM 93 69853 - 69839 - g 90 -7.2 -5.37043 | opp_overlap 69838 AGCTGAGAGAAAAAA TGAAGT TTT ACTTCA AGTTTTAGAACTTTT TERM 94 69975 - 69961 - g 71 -2.2 -5.35222 | AAAATTTAGAAAAAA TTTTAA ATG CTAAAA ATTTAGAAGAGCTTT CJJ81176_0078 69774 - 70097 + | hypothetical protein TERM 95 71362 - 71344 - g 78 -6.2 -4.72272 | TTCTTTGATCAAAAA TTAAATTT TGA AAATTTAA ATAAAACTCAAGTAG CJJ81176_0079 70117 - 71946 + | hypothetical protein flgD 72000 - 72884 + | flagellar basal body rod modification protein TERM 96 74146 - 74132 - g 72 -2.8 -5.40474 | AGGCGTCGAAAAAAA TGTAGT TAC ACAACA AGATGGTGTAGCTGA flgE-1 72888 - 74525 + | flagellar hook protein TERM 97 74521 - 74540 + T 75 -4.4 -5.1286 | opp_overlap 74516 74521, overlap 74513 CCATTAATATGAAAA GATAATTT TTAG GAATTATC TTTTTCTAATTTTTC CJJ81176_0082 76397 - 74529 - | hypothetical protein TERM 98 76163 - 76175 + g 75 -4.9 -5.16133 | opp_overlap 76163 TTTTTTTTGGATAAA TTTCT ATA AGAAA TTTTTGTATTATGGT CJJ81176_0083 77116 - 76682 - | hypothetical protein CJJ81176_0084 77645 - 77764 + | hypothetical protein CJJ81176_0085 77987 - 78322 + | anion transporter CJJ81176_0086 78274 - 78453 + | anion transporter CJJ81176_0087 78413 - 78604 + | 2-oxoglutarate/malate translocator CJJ81176_0088 78615 - 78782 + | anion transporter TERM 99 79009 - 79023 + G 71 -5.7 -4.40561 | opp_overlap 79009 79011, overlap 79006 TAACTCACTATGCAA CAGGA ACAGC TCCTG TTATTTTTGGAACGG CJJ81176_0089 78801 - 79151 + | 2-oxoglutarate/malate translocator TERM 100 79181 - 79152 - T 100 -13.9 -3.17212 | opp_overlap 79152 79155, overlap 79155 79179 TTAGGATTTTATTAA TAATTTCTAGGAA TTAA TTCCTAGAAATTA TTCTATAAAACCGCT TERM 101 79152 - 79181 + T 100 -13.9 -3.48395 | opp_overlap 79152 79155 79179, overlap 79155 TTAGGATTTTATTAA TAATTTCTAGGAA TTAA TTCCTAGAAATTA TTCTATAAAACCGCT TERM 102 79155 - 79178 + T 95 -11.2 -3.88232 | opp_overlap 79152 79155, overlap 79152 GGATTTTATTAATAA TTTCTAGGAA TTAA TTCCTAGAAA TTATTCTATAAAACC TERM 103 79178 - 79155 - T 91 -11.2 -3.7282 | opp_overlap 79155 79152, overlap 79152 GGATTTTATTAATAA TTTCTAGGAA TTAA TTCCTAGAAA TTATTCTATAAAACC trmU 80195 - 79179 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 104 80027 - 80045 + g 75 -4.6 -5.14894 | opp_overlap 80027 80028, overlap 80028 80029 80031 AAATATGATAAGGAA TTTGCAAA AAG TTTGCAAC TTTTTCTACTTTTTT TERM 105 80028 - 80044 + g 74 -8.1 -3.65276 | opp_overlap 80028 80027, overlap 80027 80029 80031 AATATGATAAGGAAT TTGCAAA AAG TTTGCAA CTTTTTCTACTTTTT CJJ81176_0091 80800 - 80195 - | lysine decarboxylase family protein CJJ81176_0092 81709 - 80921 - | hypothetical protein TERM 106 81622 - 81641 + g 75 -4.4 -5.23765 | overlap 81624 CGGCTACTCCGTGTT TGTTGATT TTAA AATCAATA TTTTTATCTTGTTTA CJJ81176_0093 82316 - 81723 - | hypothetical protein CJJ81176_0094 82860 - 83504 + | HmcD domain-containing protein CJJ81176_0095 83489 - 83692 + | peptidase family protein CJJ81176_0096 83698 - 84087 + | peptidase family protein fliY 84957 - 84136 - | flagellar motor switch protein FliY fliM 86054 - 84975 - | flagellar motor switch protein FliM fliA 86746 - 86054 - | flagellar biosynthesis sigma factor CJJ81176_0100 87083 - 86727 - | hypothetical protein CJJ81176_0101 87968 - 87102 - | ParaA family ATPase flhF 89415 - 87961 - | flagellar biosynthesis regulator FlhF TERM 107 89205 - 89223 + g 74 -2.4 -5.52909 | GCGAGCTTTTTTTTG CAGGTAAA GAT TTTCCTTG TTTTTTTAAGTGTTC folK 89898 - 89425 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 108 89542 - 89554 + g 73 -5.5 -4.63542 | opp_overlap 89542 AAGATCTAAATCAAG CGTTC TAG GAGCG TTTTTGAAAGTTCTC TERM 109 89883 - 89849 - G 85 -4.5 -5.52384 | gap 1, opp_overlap 89861 89866, overlap 89850 TTTTGACTAAAAAAA GGAAAAAAACGACTTT TTTC AAAGT-GTTTTACTCC TTGAATTTTTAGCAT aroQ 90380 - 89901 - | 3-dehydroquinate dehydratase TERM 110 90985 - 90954 - g 74 -3.2 -5.47159 | opp_overlap 90957 90960, overlap 90957 GTTGAAGATAAAAAA CAAGAATTTTTAAA AAGA TTTGAAAATTCTTT GAAATTTAAAAATGA TERM 111 90982 - 90957 - g 71 -4.9 -4.80737 | opp_overlap 90957 90960, overlap 90954 GAAGATAAAAAACAA GAATTTTTAAA AAGA TTTGAAAATTC TTTGAAATTTAAAAA TERM 112 90957 - 90982 + G 71 -7.1 -3.71649 | opp_overlap 90957 90954, overlap 90960 GAAGATAAAAAACAA GAATTTTTAAA AAGA TTTGAAAATTC TTTGAAATTTAAAAA CJJ81176_0105 90471 - 91700 + | chlorohydrolase sppA 91688 - 92584 + | signal peptide peptidase SppA, 36K type CJJ81176_0107 92663 - 93694 + | hypothetical protein TERM 113 93705 - 93738 + F 81 -5.5 -5.25799 | overlap 93708 CTTAGTCTTTAAGTT TAATGTCCATTTT ATTATTGC AAAATGGACATTC TTTTTCTATTGTTTT TERM 114 93708 - 93735 + G 81 -7.2 -4.65219 | overlap 93705 AGTCTTTAAGTTTAA TGTCCATTTT ATTATTGC AAAATGGACA TTCTTTTTCTATTGT CJJ81176_1709 93707 - 93829 + | hypothetical protein CJJ81176_0108 94052 - 93936 - | hemerythrin family non-heme iron protein CJJ81176_0109 94558 - 94262 - | hypothetical protein TERM 115 94744 - 94704 - R 93 -9.3 -4.90136 | opp_overlap 94704, overlap 94697 94708 94710 94711 AATTAATATTAAAAA TTAAGACTTACTGATTCTA GTA TAGAATCAGTAAATAATAA TATGTGCAATTTGTG TERM 116 94740 - 94708 - R 88 -10.1 -3.87412 | opp_overlap 94704, overlap 94704 94710 94711 AATATTAAAAATTAA GACTTACTGATTCTA GTA TAGAATCAGTAAATA ATAATATGTGCAATT TERM 117 94738 - 94710 - R 100 -12.7 -3.50111 | opp_overlap 94704, overlap 94708 94704 94711 TATTAAAAATTAAGA CTTACTGATTCTA GTA TAGAATCAGTAAA TAATAATATGTGCAA TERM 118 94737 - 94711 - R 100 -14 -2.68982 | opp_overlap 94704, overlap 94710 94708 94704 ATTAAAAATTAAGAC TTACTGATTCTA GTA TAGAATCAGTAA ATAATAATATGTGCA CJJ81176_0110 95387 - 94731 - | hypothetical protein TERM 119 95058 - 95079 + g 85 -3.9 -5.75599 | gap 1, overlap 95068 AGATCTTAAATTTTC GATTT-CTTT ATC AAAGCAAATC TTTTTTTCTGCTTTG CJJ81176_0111 96819 - 95380 - | iron-sulfur cluster binding protein TERM 120 95547 - 95566 + g 72 -5 -4.8384 | GTGAAAAACGCCATT TATCGCCA TTGG TTGCGATA TTTTTAAATTGTTTA TERM 121 96696 - 96718 + g 71 -2 -5.41143 | overlap 96701 GCCAGTCTTTAAATC TAGCATCAAT AAC ATTGAGTCTA TTTTTTTGCAAAGTA CJJ81176_0112 97556 - 96816 - | hypothetical protein TERM 122 97659 - 97622 - R 78 -6.7 -4.65819 | gap 1, overlap 97648 AAAAGCAAAGTAAAA TTTCTAACAAATATTC TAAAAAC GAATATTTGTT-GAAA TAAAACTTAAATTTT lctP 99361 - 97679 - | L-lactate permease TERM 123 98044 - 98028 - G 78 -3 -5.59962 | gap 1 GAAAAGAAAGAAAAA GCATCAC CTGT GTG-TGC AAAAGCAAGTCCTAA TERM 124 99205 - 99192 - G 76 -6.7 -4.48299 | overlap 99194 TTATAGGCAAATAAA GCTAC TAAA GTAGC AAGTATAACAGTTAA TERM 125 99540 - 99515 - R 100 -8.5 -5.30448 | AAATAAATATAAAAA TAGAACAAGAT AAAA ATCTTATTCTA AAGGGGTAGCAGCTG cdtC 100102 - 99533 - | cytolethal distending toxin, subunit C cdtB 100910 - 100113 - | cytolethal distending toxin, subunit B cdtA 101713 - 100907 - | cytolethal distending toxin, subunit A TERM 126 101785 - 101797 + H 70 -3.5 -5.16681 | TAATTTTCCGCTTTT TAAAA ATG TTTTA TTTTGTTGTTTTTAA TERM 127 102030 - 102019 - g 80 -2.2 -5.72622 | overlap 102022 102023 GCGACAAAGAAAAAA GCAC TTTT GTAC TCAAAAATCTTACAC CJJ81176_0117 101790 - 102059 + | hypothetical protein cydA 102060 - 103622 + | cytochrome d ubiquinol oxidase, subunit I cydB 103622 - 104746 + | cytochrome d ubiquinol oxidase, subunit II CJJ81176_0120 105635 - 104940 - | aspartate racemase, putative ung 106450 - 105755 - | uracil-DNA glycosylase TERM 128 106083 - 106061 - G 72 -8.5 -3.30821 | AAGAATAGAATTTAA GAGCAAAAC TCCTT GTTTTGCCC AAGAGCTTAAATCTC TERM 129 107283 - 107271 - g 77 -7.7 -4.09511 | AAGATGTTCTTAAAA TGGGT AGA ACCCA ACTGCAAGATGCTGT TERM 130 108092 - 108069 - g 70 -5.4 -4.62669 | TAAGTAAAGAACAAA TTGATGAAAT TTTA ACTCCATCAA ATATGCTAAATCCTC aspA 106721 - 108127 + | aspartate ammonia-lyase TERM 131 108172 - 108189 + G 77 -5.5 -4.91459 | opp_overlap 108172 TAATTTTGCAAGTAA TCGTCCT TCTT GGGGCGA TTTTTATCGGTATTC TERM 132 108333 - 108313 - g 76 -9.8 -2.73483 | opp_overlap 108313 ATGTTATTTTAATTA TTGCTGCA GCTAT TGCAGCAA TTTCTGCTATGCAAC TERM 133 108313 - 108333 + G 93 -10.5 -4.0162 | opp_overlap 108313 ATGTTATTTTAATTA TTGCTGCAG CTA TTGCAGCAA TTTCTGCTATGCAAC TERM 134 109147 - 109161 + G 77 -8.6 -3.54768 | opp_overlap 109122 109120 109146 109144 GGGTTAAACAAACCC CTGCTA TGT TAGCAG TTGCATTTTTCTTTG dcuA 108153 - 109481 + | anaerobic C4-dicarboxylate transporter TERM 135 109510 - 109488 - f 70 -6.3 -4.08485 | opp_overlap 109483 CTTATTTAAATCAAA CCCTAGG TTTTTCTCT CCTAGGG TTAAAATTTTTTCAT CJJ81176_0124 109589 - 110950 + | putative lipoprotein CJJ81176_0125 110960 - 111328 + | putative lipoprotein CJJ81176_0126 111352 - 111975 + | putative lipoprotein TERM 136 112007 - 112027 + F 100 -7.6 -5.77632 | TGAATAAAATTTTTA GCTCAAGT GTTTA GCTTGAGC TTTTTTTATGATTTT TERM 137 112645 - 112628 - g 76 -6.3 -4.64334 | opp_overlap 112628 AATTTCTTAATAAAA CTATGAC AAAT GCCATAG GTTCTATGAGTGGAC CJJ81176_0127 112057 - 113394 + | hypothetical protein CJJ81176_0128 113404 - 114606 + | hypothetical protein TERM 138 114609 - 114640 + F 72 -7.5 -3.72494 | opp_overlap 114609 114608, overlap 114610 114614 TCTAGGCTTTTAAAT TTTTAGAGTTTGA TTTTTC TCAAACTCTAAAC TCTTTCTTAAATTCA TERM 139 114610 - 114639 + F 84 -11 -2.82773 | opp_overlap 114609 114608, overlap 114609 114614 CTAGGCTTTTAAATT TTTAGAGTTTGA TTTTTC TCAAACTCTAAA CTCTTTCTTAAATTC rplU 114765 - 115073 + | 50S ribosomal protein L21 rpmA 115084 - 115338 + | 50S ribosomal protein L27 TERM 140 115339 - 115370 + F 100 -13.2 -3.89617 | opp_overlap 115339, overlap 115332 GTATATCCTGCATAA GTTTTTAGGACGCT TTTT AGCGTCTTGAAAAC TTTAAATTTATAAAT TERM 141 115370 - 115339 - f 77 -8.8 -3.30771 | opp_overlap 115332 115339 GTATATCCTGCATAA GTTTTTAGGACGCT TTTT AGCGTCTTGAAAAC TTTAAATTTATAAAT obgE 115444 - 116514 + | GTPase ObgE TERM 142 116495 - 116533 + F 90 -7.6 -5.02074 | opp_overlap 116494 116485 116497 116501 AAAATTTTAACAATC TAGGAAGTGTTTTATATT AAA AATTTCAAACACTCCCTA TTTTTTCAAAAATAA TERM 143 117039 - 117053 + G 76 -2.8 -5.52384 | TAATGACAGCTTAAG TGCTTA TGC TACGCA TTTTTTTGATGCGGA proB 116566 - 117357 + | gamma-glutamyl kinase fmt 117431 - 118348 + | methionyl-tRNA formyltransferase CJJ81176_0134 118311 - 118964 + | biotin--protein ligase CJJ81176_0135 118961 - 119746 + | ParA family chromosome partitioning ATPase CJJ81176_0136 119752 - 120588 + | ParB family chromosome partitioning protein CJJ81176_0137 120649 - 121074 + | F0F1 ATP synthase subunit B' TERM 144 121305 - 121295 - g 89 -4 -5.89947 | overlap 121284 GAAATTCAAAAAAAA CTTT TAG AAAG TAAAGCTAAGAAATT CJJ81176_0138 121085 - 121597 + | F0F1 ATP synthase subunit B TERM 145 121988 - 121978 - g 82 -4 -5.52096 | opp_overlap 121978, overlap 121971 AAACTTAACAAAAAA TTTG ATG CAAA TATTAAATTAAACAA atpH 121600 - 122121 + | F0F1 ATP synthase subunit delta atpA 122135 - 123640 + | F0F1 ATP synthase subunit alpha TERM 146 123698 - 123686 - g 80 -6.3 -4.88326 | AAAGAAAAATTAAAA GTGTT TAT AACAC TCAAAAGACTACAAA atpG 123649 - 124533 + | F0F1 ATP synthase subunit gamma atpD 124558 - 125955 + | F0F1 ATP synthase subunit beta TERM 147 126267 - 126252 - g 82 -4 -5.50499 | overlap 126254 TGAGATTGAAAAAAA TCTTGC TCAA GCAAAA GATTTGATTAAATCT atpC 125959 - 126348 + | F0F1 ATP synthase subunit epsilon CJJ81176_0144 126348 - 126902 + | MotA/TolQ/ExbB proton channel family protein CJJ81176_0145 126911 - 127300 + | TonB system transport protein ExbD, putative CJJ81176_0146 127303 - 128082 + | TonB domain-containing protein TERM 148 128118 - 128093 - g 88 -4.3 -5.67967 | gap 1, opp_overlap 128093 128094, overlap 128094 ATTAGGAGAAAAAAA TGAAAAAAATTG TAG CAATTTTTTT-A GTCTTTTTAGGAAGT tolB 128092 - 129300 + | translocation protein TolB CJJ81176_0148 129377 - 129874 + | peptidoglycan-associated lipoprotein Omp18 TERM 149 129896 - 129915 + G 83 -8.6 -4.13995 | opp_overlap 129892 129899 AAAAAAATATTCACA GTAGCTCT TCTT GGAGCTAC TTTACTTTATGCAGA TERM 150 130543 - 130522 - g 75 -5.9 -4.84761 | AGATGTTGATAAAAA TGCTTTTGA AGAT TCCAAAGCA AAATTAAATTTTCTC CJJ81176_0149 129878 - 130825 + | hypothetical protein slyD 130840 - 131415 + | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD TERM 151 131923 - 131937 + G 71 -8.6 -2.74799 | overlap 131922 131925 GACAAATCGTTGTAG CAGGTT TAA AACCTG ATTTAGCAAGTTATG fabD 131415 - 132335 + | malonyl CoA-acyl carrier protein transacylase mtnA 132335 - 133021 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase CJJ81176_0153 133018 - 133773 + | PP-loop family protein CJJ81176_0154 133778 - 134299 + | pyrazinamidase/nicotinamidase, putative TERM 152 134780 - 134794 + G 71 -8.6 -2.82936 | overlap 134779 GGGCTTTTTTACCTT CGCATT CTC AATGCG CTTTAGGATTTGAGT CJJ81176_0155 134299 - 134913 + | hypothetical protein CJJ81176_0156 134910 - 135314 + | putative metalloprotease CJJ81176_0157 135405 - 136658 + | hypothetical protein dusB 137572 - 136655 - | tRNA-dihydrouridine synthase B TERM 153 137531 - 137511 - G 81 -8.3 -4.33675 | ACTACATTACGAAAA GGCAGATCT GAA AAACCTGCC ATAGGGGCTAAAAAT CJJ81176_0159 138429 - 137569 - | hypothetical protein CJJ81176_0160 138907 - 138545 - | dnaK suppressor protein, putative TERM 154 138880 - 138896 + g 89 -3.8 -6.07969 | CTTCTAAAATATTTT TGAAAT TTTGT ATTTCA TTTTTTTTCATTTTA CJJ81176_0161 139368 - 138919 - | hypothetical protein accD 140212 - 139370 - | acetyl-CoA carboxylase subunit beta TERM 155 139918 - 139933 + g 71 -3.2 -5.28826 | overlap 139920 TACCTGTTTTACTTT CACCTT CGCT AAGGCG TTTTTTATAGGATTT CJJ81176_0163 140943 - 140221 - | inositol monophosphatase family protein CJJ81176_0164 143162 - 140943 - | OMP85 family outer membrane protein tyrA 143239 - 144066 + | prephenate dehydrogenase CJJ81176_0166 144146 - 145519 + | M24/M37 family peptidase lpxC 145519 - 146403 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase CJJ81176_0168 146442 - 146843 + | hypothetical protein TERM 156 147597 - 147610 + G 91 -4.5 -5.96894 | TGAGCACACTTTCAG GTTCG GGAT CGAGC TTTTTTTCTTTAGCT thrB 146852 - 147730 + | homoserine kinase CJJ81176_0170 147755 - 148012 + | hypothetical protein TERM 157 148110 - 148096 - g 88 -8.6 -4.41494 | GACTTGGAATTAAAA CAGCAT CAA ATGCTG TAGAACCTGAGATTG infB 147999 - 150614 + | translation initiation factor IF-2 TERM 158 150761 - 150775 + G 73 -3.6 -5.28683 | overlap 150763 TATGATGCTTTTGTG TATCTT GAT AAGATG TTTTTTAATGTTCAT rbfA 150611 - 150973 + | ribosome-binding factor A CJJ81176_0173 150963 - 151385 + | hypothetical protein CJJ81176_0174 151590 - 153401 + | McrBC restriction endonuclease system, McrB subunit, putative TERM 159 153480 - 153468 - g 71 -4.9 -4.71418 | AAGATTTAAAAGAAA TTTTC AAA GAAAA GGCCGAAGGGTTTTA TERM 160 153666 - 153653 - g 79 -5.3 -5.29782 | GATAGCTATAAAAAA GAAGA TAGC TCTTC AAATCACGATAAAGA CJJ81176_0175 153401 - 153880 + | hypothetical protein TERM 161 154723 - 154705 - g 71 -4.6 -4.82548 | opp_overlap 154700 154705, overlap 154700 CAAAAAGATATAAAA GTGCAA GTGTGTT TTGCAC CTTTACCTTTTTAAA CJJ81176_0176 153871 - 154737 + | hypothetical protein CJJ81176_0177 155529 - 154726 - | cation ABC transporter, permease protein TERM 162 155440 - 155424 - G 78 -4.4 -5.38047 | CAGCCATAGAAAAAA GGCGAT TTATC ATCACC AAAGTACCTATGATC TERM 163 155541 - 155563 + r 86 -6.5 -5.20154 | overlap 155532 GCATTATTTTCCTTT GAAAATTTT AAACA AAAATTTTC TTTTTTAAATTCTGT CJJ81176_0178 156376 - 155522 - | cation ABC transporter, ATP-binding protein TERM 164 155622 - 155633 + g 82 -4.4 -5.52384 | TGTTCGCATAGTTTT TTGC TATC GCAA TTTTTTTCATCGCAA TERM 165 155998 - 156010 + g 71 -4.9 -4.7629 | TTAGAGAATCAATGG TTTTG TTC CAAAA TTTTTCCATTCCTAC CJJ81176_0179 157279 - 156389 - | cation ABC transporter, periplasmic cation-binding protein TERM 166 158891 - 158876 - g 72 -6.2 -4.28049 | GTTAAAATGCTAAAA CAAAGT TCAG ACTTTG CTAATGCTTTAGCTA CJJ81176_0180 157478 - 159457 + | methyl-accepting chemotaxis protein TERM 167 159465 - 159493 + F 100 -12 -5.52096 | opp_overlap 159461 GGTTTTAATTAGTCA TTTATACCTAGT GAAAA ACTAGGTATAAA TTTTTTCTTCAATTT CJJ81176_0181 159592 - 161373 + | hypothetical protein TERM 168 161403 - 161381 - T 100 -12.2 -5.33026 | opp_overlap 161385 GAAGCTAAATAAAAA TAAAGTTGCT TTT AGCAACTTTA TAAAATCTTAATGCA TERM 169 161385 - 161399 + T 82 -8.6 -3.92602 | opp_overlap 161381 CTAAATAAAAATAAA GTTGCT TTT AGCAAC TTTATAAAATCTTAA trxB 162349 - 161411 - | thioredoxin-disulfide reductase TERM 170 162460 - 162476 + r 93 -10.9 -4.16182 | opp_overlap 162460 AATTTTTAAGAAGAA GGCTAGT TAT ACTAGCC TTTAGTTTATAGTAA TERM 171 162476 - 162460 - R 93 -10.9 -3.95725 | opp_overlap 162460 AATTTTTAAGAAGAA GGCTAGT TAT ACTAGCC TTTAGTTTATAGTAA trx 162797 - 162483 - | thioredoxin CJJ81176_0184 163192 - 162854 - | hypothetical protein hom 164439 - 163192 - | homoserine dehydrogenase TERM 172 164113 - 164098 - G 76 -7.6 -3.9941 | TGCTTCATAACCAAA GGCTAA ATTT TTAGCC AAATTTTCAAGTTCA TERM 173 164159 - 164172 + g 85 -2.3 -6.04324 | AGCATAGCTTTATTT GCAGT AACA ACAGC TTTTTTCTTTTTTAA CJJ81176_0186 165645 - 164443 - | aspartate aminotransferase TERM 174 164940 - 164966 + g 76 -6.6 -4.49311 | overlap 164942 CCGCTACATCTTTTG CACCTTCAATTT CCA AAATAGAAGGAG TTTTATAGTCATCAT TERM 175 165179 - 165166 - G 70 -3.9 -5.07107 | opp_overlap 165158 CAAATTTTCAAAAAA TTGAT TTTC ATCAA GCTCAAATTTTTCAT CJJ81176_0187 166463 - 165657 - | hypothetical protein CJJ81176_0188 167395 - 166457 - | hypothetical protein CJJ81176_0189 168071 - 167388 - | RNA methyltransferase TERM 176 167917 - 167954 + g 70 -5.9 -4.28049 | gap 1, opp_overlap 167929, overlap 167918 TTCGCATAAGCTTGA GCA-GTTTTAAAATCAAG TTT TTTGATTTTAAAACCTGA TTTTGCGATTTTGGA TERM 177 167918 - 167953 + g 76 -9.4 -3.16106 | gap 1, opp_overlap 167929, overlap 167917 TCGCATAAGCTTGAG CA-GTTTTAAAATCAAG TTT TTTGATTTTAAAACCTG ATTTTGCGATTTTGG CJJ81176_0190 168909 - 168085 - | tetrapyrrole methylase family protein rpmE 169112 - 168912 - | 50S ribosomal protein L31 CJJ81176_0192 169847 - 169191 - | hypothetical protein CJJ81176_0193 170256 - 169849 - | hypothetical protein TERM 178 169994 - 169983 - G 70 -4.4 -4.88295 | AAACAAAGTGAAAAA TTGC TAAG GCAA AAATTAAGATCCAAG CJJ81176_0194 170681 - 170256 - | cytochrome c family protein CJJ81176_0195 171262 - 170681 - | 6-pyruvoyl tetrahydrobiopterin synthase-like protein CJJ81176_0196 172002 - 171259 - | radical SAM domain-containing protein moaA 172967 - 172005 - | molybdenum cofactor biosynthesis protein A TERM 179 172573 - 172586 + g 74 -3.1 -5.34555 | AATACATCTTTTTGC GCAAG AGTT TTTGC TTTTTTGTGATCTAG CJJ81176_0198 173495 - 172980 - | hypothetical protein CJJ81176_0199 173692 - 173492 - | hypothetical protein TERM 180 173818 - 173791 - R 75 -7.2 -4.14392 | overlap 173793 173812 TTTCAAGCCTTAAAA TATCTTCTTTTA GACT TAAAAGAAGATC AAAAATAATTTTTTC TERM 181 173816 - 173793 - R 83 -9.8 -3.67 | overlap 173791 173812 TCAAGCCTTAAAATA TCTTCTTTTA GACT TAAAAGAAGA TCAAAAATAATTTTT ubiA 174864 - 173980 - | prenyltransferase TERM 182 174070 - 174052 - G 72 -2.5 -5.38497 | gap 1 ATTTAAAGTAAAAAA TGCTC-TA TTAA TATGAGCA AAATTTTTATGGACA TERM 183 175194 - 175181 - g 74 -5.3 -4.9181 | opp_overlap 175181 AGAGAATATCAAAAA GCAAA AGAA TTTGC TTTAGCTAGAAATTT miaA 174935 - 175804 + | tRNA delta(2)-isopentenylpyrophosphate transferase CJJ81176_0202 176353 - 175790 - | hypothetical protein TERM 184 176706 - 176665 - R 75 -8.3 -3.41745 | gap 1, opp_overlap 176662 176661 176680, overlap 176667 176680 TTTGTAGAATACGAA TAGCTTTTGATATAAGTCTA TTA TAGACTTATATCAAG-GCTG GGCATTATTGAGCTG TERM 185 176704 - 176667 - R 85 -10.9 -3.27771 | gap 1, opp_overlap 176662 176661 176680, overlap 176665 176680 TGTAGAATACGAATA GCTTTTGATATAAGTCTA TTA TAGACTTATATCAAG-GC TGGGCATTATTGAGC CJJ81176_0204 176893 - 176711 - | hypothetical protein TERM 186 177000 - 176987 - H 71 -2.5 -5.46629 | opp_overlap 176987 176993 176995, overlap 176960 176974 AATATTTCAAAAAAA TATAA TTTT TTATA ATATATTTAAATTAT TERM 187 176995 - 177034 + H 78 -9.8 -3.27739 | opp_overlap 176987 177002, overlap 176987 176993 177019 AAAAAAATATAATTT TTTATAATATATTTAAAT TATT ATTAAAATATATTATAAA TGTATCTTATTTTAT sodB 177161 - 177823 + | superoxide dismutase, Fe CJJ81176_0206 177892 - 178110 + | hypothetical protein CJJ81176_0207 178220 - 178582 + | hypothetical protein TERM 188 178598 - 178579 - T 93 -10.8 -4.53163 | opp_overlap 178579 178583 TTATATAGGACAAAA GTAAGTGC TCTA GCACTTAC TCTCCTAAGCTTGGA TERM 189 178579 - 178598 + T 82 -10.8 -2.80994 | opp_overlap 178579, overlap 178583 TTATATAGGACAAAA GTAAGTGC TCTA GCACTTAC TCTCCTAAGCTTGGA CJJ81176_0208 179800 - 178595 - | saccharopine dehydrogenase TERM 190 179861 - 179849 - R 74 -4.9 -5.01042 | opp_overlap 179820 179819 AATTTAAACTAAAAA TTGAT AAT ATCAA AACTTATTTTCTCTT CJJ81176_0209 180750 - 179842 - | iron ABC transporter, ATP binding subunit TERM 191 179926 - 179913 - G 100 -2.5 -6.34616 | opp_overlap 179916 CCAAAATAAAAAAAA TTATA TTTT TATAA AGTAATTTTAGCCTA CJJ81176_0210 182350 - 180734 - | iron ABC transporter, permease protein TERM 192 180885 - 180861 - G 70 -6.5 -4.13654 | opp_overlap 180862, overlap 180857 180877 CTTGCAAACCAGAAA GCTTTAACACT TAA AGTTTCAAAGC CAAAAGGCGCTAAAA TERM 193 182319 - 182302 - G 84 -7 -5.24551 | GTAAAGCAAGAAAAA GGGCAA GTAAAA TTGCCC CGAGTTTATAGTATT CJJ81176_0211 183354 - 182350 - | iron ABC transporter, periplasmic iron-binding protein CJJ81176_0212 183481 - 183365 - | hypothetical protein TERM 194 184088 - 184104 + G 72 -8.1 -3.28966 | overlap 184086 184082 GCTATTCCTTATGTT TTAATCG CTA CGATTAA TATCTATTTTGCTAG TERM 195 184516 - 184492 - g 90 -10.1 -3.96842 | opp_overlap 184499 184508, overlap 184499 ACTTGAATATAACAA TCAAAAAGCTG AAG CAGCTTTTAGA AAAGAGCTTGTTTAT TERM 196 184509 - 184499 - g 83 -6.8 -5.01845 | opp_overlap 184499 184508, overlap 184492 TATAACAATCAAAAA GCTG AAG CAGC TTTTAGAAAAGAGCT TERM 197 184499 - 184509 + G 72 -6.8 -4.07687 | opp_overlap 184499 184492, overlap 184508 TATAACAATCAAAAA GCTG AAG CAGC TTTTAGAAAAGAGCT CJJ81176_0213 183674 - 184873 + | putative transporter CJJ81176_0214 185044 - 186330 + | transporter, putative TERM 198 186345 - 186328 - T 82 -8.5 -3.88641 | opp_overlap 186328, overlap 186331 AATAAAGATGAAGAA TAAGCCT CTTT AGGCTTA TTTCTTTTTGTAAAT TERM 199 186328 - 186345 + T 100 -8.5 -4.97405 | opp_overlap 186328 186331 AATAAAGATGAAGAA TAAGCCT CTTT AGGCTTA TTTCTTTTTGTAAAT CJJ81176_0215 187527 - 186343 - | Ser/Thr protein phosphatase family protein TERM 200 187162 - 187180 + g 91 -5.4 -5.80364 | overlap 187164 GATGATATATCCATT TTTTTTAG CTT CTAAAAGA TTTTTTTCTTGACAT TERM 201 187329 - 187359 + g 73 -9.3 -2.55019 | gap 1, opp_overlap 187332 187333, overlap 187328 187332 187333 GCATACGCATTTCTA GAAG-TTTGAGTAA AATT TTACTCAAATCTTC ATCATTTTTAACATT TERM 202 187333 - 187354 + g 74 -8.9 -3.26718 | opp_overlap 187332 187333, overlap 187332 187329 187328 ACGCATTTCTAGAAG TTTGAGTAA AATT TTACTCAAA TCTTCATCATTTTTA TERM 203 187354 - 187333 - G 70 -8.9 -2.58663 | opp_overlap 187333 187332 187329 187328, overlap 187332 ACGCATTTCTAGAAG TTTGAGTAA AATT TTACTCAAA TCTTCATCATTTTTA CJJ81176_0216 187746 - 187537 - | PhnA domain-containing protein CJJ81176_0217 188458 - 187739 - | TerC family integral membrane protein purN 189096 - 188530 - | phosphoribosylglycinamide formyltransferase TERM 204 188996 - 189017 + g 74 -2.3 -5.63504 | overlap 188992 188997 AGGCAAAGTACTACT TCATAGG TATTTTCC CCTATGG TTTTTTTATGAAGTT CJJ81176_0219 190457 - 189087 - | hypothetical protein TERM 205 189388 - 189372 - G 72 -6.7 -4.10007 | ATAATTTTGTGAAAA TTTTCTA GCA TAGAAAA AGCGATTTTTTTGCA CJJ81176_0220 191139 - 190441 - | hypothetical protein CJJ81176_0221 192646 - 191141 - | Mg chelatase-related protein def 193170 - 192643 - | peptide deformylase TERM 206 193183 - 193216 + r 100 -11.3 -5.00884 | opp_overlap 193191 CATTAAAAAGCCTTT GTTTTAAATGATCTC CAAA GAAATCATTTAAAAC TTTTTTCCAAAACCT clpP 193790 - 193206 - | ATP-dependent Clp protease proteolytic subunit TERM 207 193506 - 193491 - G 74 -5.4 -4.9445 | ACAACTAAGCAAAAA TGCTCC CATA GAAGCA GCTTGTCCTATACAA tig 195124 - 193790 - | trigger factor TERM 208 194050 - 194040 - G 70 -4 -4.92757 | opp_overlap 194040 TCATCAATAATAAAA GTAA GTT TTAC ACTTTTTTGCGCTTC TERM 209 195174 - 195144 - H 74 -7 -4.36914 | opp_overlap 195149, overlap 195149 TTTTTCCTTATAAAA TAAAATTTGCTTTC AAT GATAGCAAATTTTT CCTTATTACTTGCAT TERM 210 195149 - 195169 + H 86 -6.9 -5.00339 | opp_overlap 195149 195144 CCTTATAAAATAAAA TTTGCTTTC AAT GATAGCAAA TTTTTCCTTATTACT TERM 211 195169 - 195149 - H 90 -6.9 -5.18371 | opp_overlap 195149, overlap 195144 CCTTATAAAATAAAA TTTGCTTTC AAT GATAGCAAA TTTTTCCTTATTACT folE 195268 - 195840 + | GTP cyclohydrolase I fliI 195840 - 197225 + | flagellum-specific ATP synthase purF 198565 - 197228 - | amidophosphoribosyltransferase TERM 212 197736 - 197752 + g 70 -3.7 -5.08824 | opp_overlap 197735 197736, overlap 197725 197738 ACAGGCACGACAAAG TCTGCTT TAT AAGCAAA TTTTTTAGCTAAAGC TERM 213 198517 - 198505 - G 75 -5.5 -4.8048 | GTTGCATAGCAAAAA GCGCA TAA TACGC ATAAGTGCTAGCATT dapB 199295 - 198567 - | dihydrodipicolinate reductase CJJ81176_0229 200539 - 199358 - | recombination factor protein RarA TERM 214 200377 - 200363 - G 76 -8.6 -3.49077 | opp_overlap 200371, overlap 200358 TTCATAAAAATCTAA GCCAAA TTC TTTGGC TACAACTCTAGCAAA CJJ81176_0230 201666 - 200539 - | hypothetical protein TERM 215 201505 - 201516 + g 72 -4.4 -5.05782 | AAAACTTCCTTTAGA GGTT AAAA AACC TTTTTTGAAGTAAAT TERM 216 201804 - 201770 - R 73 -8.8 -2.93073 | opp_overlap 201774 201780, overlap 201780 TTTGCCGAAGAATGA TTTTTATAAATCCCTT GTT AAGGGATTTATATTAA TAAGCTTTTTTATAA TERM 217 201774 - 201800 + r 100 -14 -3.23611 | opp_overlap 201770 201780, overlap 201780 CCGAAGAATGATTTT TATAAATCCCTT GTT AAGGGATTTATA TTAATAAGCTTTTTT TERM 218 201780 - 201794 + r 85 -8.6 -4.23674 | opp_overlap 201770 201780, overlap 201774 AATGATTTTTATAAA TCCCTT GTT AAGGGA TTTATATTAATAAGC TERM 219 201794 - 201780 - R 82 -8.6 -3.88559 | opp_overlap 201780 201774, overlap 201770 AATGATTTTTATAAA TCCCTT GTT AAGGGA TTTATATTAATAAGC CJJ81176_0231 202148 - 201801 - | hypothetical protein CJJ81176_0232 202852 - 202247 - | hypothetical protein CJJ81176_0233 203030 - 202803 - | hypothetical protein CJJ81176_0234 203145 - 203008 - | hypothetical protein TERM 220 203240 - 203252 + H 83 -3.5 -5.97979 | opp_overlap 203240, overlap 203232 ATAATTATAGCAAAA TAATT CAA AATTA TTTTTTTATTCTTGT CJJ81176_0235 203388 - 204734 + | citrate transporter, authentic frameshift TERM 221 204761 - 204777 + F 70 -5.2 -4.62069 | overlap 204752 GAACTTTTGATTTTT CAATGA TTGGT TCATTG TTTTATGATATTTTT TERM 222 205848 - 205871 + G 74 -6.2 -4.37527 | opp_overlap 205854, overlap 205854 ATATAGACCTTTCTT TAAAAAGTAT TTTT ATACTTTTTG TTTTAATGGTTGTGG TERM 223 205854 - 205865 + G 78 -3 -5.50723 | opp_overlap 205854, overlap 205848 ACCTTTCTTTAAAAA GTAT TTTT ATAC TTTTTGTTTTAATGG CJJ81176_0236 204920 - 206914 + | OPT family oligopeptide transporter TERM 224 206919 - 206934 + F 81 -9 -3.80858 | overlap 206921 AAGATGCTTAATTTT TGGGGT TAAA ACCCCA TTTAATCCATTCTGA CJJ81176_0237 206988 - 207791 + | undecaprenol kinase, putative TERM 225 207901 - 207885 - f 74 -7.3 -3.9398 | TTAGAACTTTATAAA CACTCAC AGG GTAAGTG AGCGACAAAGGGTTA TERM 226 208781 - 208767 - g 70 -3.6 -5.06089 | overlap 208769 AAACTATAAAGAAAA TATGTA TTT TACACA AATTGATGAACAAGA TERM 227 209346 - 209332 - g 85 -2.8 -5.98781 | opp_overlap 209344 GATAATGAAAAAAAA CAACCT GTA ATGTTG CATCGTGCGATTTTA thrS 207922 - 209730 + | threonyl-tRNA synthetase TERM 228 210114 - 210136 + G 76 -7.6 -3.90291 | opp_overlap 210113 AAAGGACGTGAAATG GCAACTCCTG AAG CAGGTGTAGC TTTGCTTGAAAAAAT infC 209727 - 210245 + | translation initiation factor IF-3 TERM 229 210231 - 210274 + F 71 -6 -4.4267 | opp_overlap 210240, overlap 210240 210267 AATATGCTTGTAACT CCAAAAAAAGCTTAATCCAC TTTT GTGGATAAGGCTTTTAAAGG TTTTAAATTTTGAAA TERM 230 210240 - 210265 + F 83 -8.3 -4.19276 | opp_overlap 210240, overlap 210231 GTAACTCCAAAAAAA GCTTAATCCAC TTTT GTGGATAAGGC TTTTAAAGGTTTTAA TERM 231 210265 - 210240 - f 90 -6.1 -5.47399 | opp_overlap 210240 210231 GTAACTCCAAAAAAA GCTTAATCCAC TTTT GTGGATAAGGC TTTTAAAGGTTTTAA CJJ81176_0240 210284 - 211375 + | D12 class N6 adenine-specific DNA methyltransferase TERM 232 211502 - 211516 + F 75 -7.2 -4.12188 | GATCCAAAGTTATTT TCAAGA ATA TCTTGA TTTTGCCAGTAATAA CJJ81176_0241 211605 - 211730 + | hypothetical protein CJJ81176_0242 211850 - 212296 + | hypothetical protein CJJ81176_0243 212460 - 212690 + | hypothetical protein CJJ81176_0244 212753 - 213331 + | hypothetical protein CJJ81176_0245 213489 - 213752 + | hypothetical protein CJJ81176_0246 213727 - 213885 + | pathogenicity domain-containing protein TERM 233 213954 - 213921 - f 71 -4.7 -4.79053 | AAAGATGAAAATAAA CATTTAACAAAGGAA TTTT TTACTATGTCAAATG TGAGCAAGGTTTTAG TERM 234 213991 - 214011 + F 75 -7.7 -4.08216 | TACCCCAAATGTTGT TTTTTCTCA TAA TGAGGAAAA TTTTGCCCAGAGTGG TERM 235 214274 - 214260 - f 72 -7.2 -3.69449 | overlap 214258 TAATAGTGGAAAATA CTTTGA AAT TCAAAG CGGACATGATAAATT CJJ81176_0247 214455 - 214622 + | hypothetical protein CJJ81176_0248 214736 - 214867 + | pathogenicity protein, putative, truncation TERM 236 214856 - 214891 + F 76 -3.6 -5.46706 | opp_overlap 214881, overlap 214881 AATGCTAATTTAAGA TATAGTTTTTAAATAA AAAA TAATTTAAAAATTGTA TTTTTATTTTAAGCT argC 214948 - 215976 + | N-acetyl-gamma-glutamyl-phosphate reductase CJJ81176_0250 215985 - 216431 + | acetyltransferase argB 216441 - 217280 + | acetylglutamate kinase TERM 237 217538 - 217520 - g 71 -6 -4.51777 | opp_overlap 217519, overlap 217522 ATATTATAATGAAAA TATAGCTG CTG CAGCTAAA AATTTAGCCAAAGCT TERM 238 217536 - 217522 - g 80 -8.6 -3.85899 | opp_overlap 217519, overlap 217520 ATTATAATGAAAATA TAGCTG CTG CAGCTA AAAATTTAGCCAAAG TERM 239 217905 - 217893 - g 76 -7.7 -3.89903 | opp_overlap 217893 AAAGATTTTTACAAA GCCTT AAG AAGGC TTTGCGATGAAAAAG TERM 240 217893 - 217905 + G 72 -7.7 -3.59979 | opp_overlap 217893 AAAGATTTTTACAAA GCCTT AAG AAGGC TTTGCGATGAAAAAG argD 217290 - 218471 + | acetylornithine aminotransferase pcm 219120 - 218491 - | protein-L-isoaspartate O-methyltransferase CJJ81176_0254 219209 - 219757 + | hexapaptide repeat-containing transferase CJJ81176_0255 221096 - 219726 - | nicotinate phosphoribosyltransferase TERM 241 219877 - 219892 + g 88 -4 -5.72622 | opp_overlap 219877 ATAGTATTTAAAGAT GACTTT TTAA GAAGTC TTTTTTCTTTGTAGA nrdF 222108 - 221086 - | ribonucleotide-diphosphate reductase subunit beta TERM 242 222083 - 222095 + g 72 -2.7 -5.34381 | GTTTCGTTTGAGCTT GGATT GTA AATTC TTTTTCTTTGCATTT CJJ81176_0257 222532 - 222122 - | hypothetical protein TERM 243 222365 - 222349 - G 76 -3.7 -5.40072 | overlap 222351 TTTTTGTTAAAAAAA TAGCTTG AAT CAAACCA AATAAAAAAGTACAT pyrE 223141 - 222533 - | orotate phosphoribosyltransferase frr 223701 - 223144 - | ribosome recycling factor secG 224088 - 223717 - | preprotein translocase subunit SecG TERM 244 224159 - 224196 + r 87 -11.5 -2.74999 | opp_overlap 224164, overlap 224164 AAAGTTTTGAAACTT GAAAAGTTTTTGTGAGA AAAA TCCCACAAAAACTTATC TGCTATTGAAGCTTC TERM 245 224164 - 224191 + r 84 -10 -3.60348 | opp_overlap 224164, overlap 224159 TTTGAAACTTGAAAA GTTTTTGTGAGA AAAA TCCCACAAAAAC TTATCTGCTATTGAA TERM 246 224191 - 224164 - R 100 -12.2 -4.24002 | opp_overlap 224164 224159 TTTGAAACTTGAAAA GTTTTTGTGAGA AAAA TCCCACAAAAAC TTATCTGCTATTGAA CJJ81176_0261 224887 - 224192 - | hypothetical protein TERM 247 224271 - 224260 - G 70 -5.8 -4.3341 | opp_overlap 224259 CAAAATCAAGATAAA GTGC TACT GCAC CTTCGATTGGAGTTT TERM 248 224363 - 224342 - G 71 -5.9 -4.43392 | opp_overlap 224355, overlap 224362 GTAAAATGAAAATAA TATTGCAGC TACT GCTGAAATA GCTAGATTAACTATA cynT 225047 - 225682 + | carbonic anhydrase CJJ81176_0263 225679 - 227562 + | mechanosensitive ion channel family protein TERM 249 227563 - 227551 - T 74 -6.3 -4.41494 | opp_overlap 227560, overlap 227555 227560 GATTTGCAAGCAAAA GCTAT AAA ATAGC AAGATAAAATCTTGC TERM 250 227585 - 227555 - T 84 -11.4 -2.80479 | opp_overlap 227560, overlap 227551 227560 TGCAAGCAAAAGCTA TAAAATAGCAAGAT AAA ATCTTGCTATTTTT TTTAAACTGGCATAA TERM 251 227560 - 227580 + T 100 -11.3 -5.78622 | opp_overlap 227551 227555 227560 GCAAAAGCTATAAAA TAGCAAGAT AAA ATCTTGCTA TTTTTTTTAAACTGG TERM 252 227580 - 227560 - T 95 -11.3 -4.54477 | opp_overlap 227560, overlap 227551 227555 GCAAAAGCTATAAAA TAGCAAGAT AAA ATCTTGCTA TTTTTTTTAAACTGG CJJ81176_0264 228558 - 227587 - | NifU family protein CJJ81176_0265 229749 - 228568 - | cysteine desulfurase, putative TERM 253 229766 - 229788 + r 71 -2.9 -5.61913 | gap 1 TTAAAATCCTTAATT TATCCTTAAT TTTA ATTA-GGATA TTTTTTATCTTTATT CJJ81176_0266 230328 - 229927 - | hypothetical protein TERM 254 230279 - 230293 + g 71 -7.2 -3.8186 | overlap 230276 AGTTCTTTATGTTGA TGATCT AAA AGATCA TTATTCATTGAAATA CJJ81176_0267 231631 - 230465 - | hypothetical protein CJJ81176_0268 231830 - 231702 - | hypothetical protein TERM 255 231942 - 231930 - gH 71 -7.7 -3.43773 | overlap 231928 TCGCACAGCTAAATA TGTGC ATA GCACA AATGTAAAAGCTGTT rpmI 231787 - 231978 + | 50S ribosomal protein L35 TERM 256 232411 - 232397 - g 76 -6.4 -4.56597 | CTGCTTTTGCAAAAA TTGCAG AGG CCGCAA AAAAAGCACTTTGAT rplT 232072 - 232425 + | 50S ribosomal protein L20 TERM 257 232435 - 232472 + T 100 -8.7 -5.10029 | opp_overlap 232442, overlap 232427 232436 232439 CTTTGATTTTTTAGT GTAAGAATTTCAAGATT TTTG ATTCTTGAAATTCTTAA TTTTTTAGCATTGAT TERM 258 232436 - 232471 + T 93 -12.2 -3.64933 | opp_overlap 232442, overlap 232427 232435 232439 TTTGATTTTTTAGTG TAAGAATTTCAAGATT TTTG ATTCTTGAAATTCTTA ATTTTTTAGCATTGA TERM 259 232439 - 232468 + T 86 -9.5 -3.93769 | opp_overlap 232442, overlap 232427 232436 232435 GATTTTTTAGTGTAA GAATTTCAAGATT TTTG ATTCTTGAAATTC TTAATTTTTTAGCAT CJJ81176_0271 232731 - 232477 - | MCP-domain-containing signal transduction protein CJJ81176_0272 233290 - 233117 - | MCP-domain-containing signal transduction protein CJJ81176_0273 233778 - 233407 - | MCP-domain-containing signal transduction protein TERM 260 233449 - 233467 + g 71 -3.2 -5.20328 | ATTTTTCATAATCTT TTTTATAG CTT CAATAAAA TTTGTTTTTTTAAGC CJJ81176_0274 234454 - 233783 - | hypothetical protein CJJ81176_0275 234632 - 235489 + | hypothetical protein TERM 261 235507 - 235491 - f 93 -10.9 -4.05319 | opp_overlap 235491 235487 ACAAAGAAGATTAAA GAGCCTT TTT AAGGCTC TAAATTGTAGTGATG TERM 262 235491 - 235507 + F 82 -10.9 -2.62024 | opp_overlap 235491, overlap 235487 ACAAAGAAGATTAAA GAGCCTT TTT AAGGCTC TAAATTGTAGTGATG CJJ81176_0276 235520 - 235996 + | hypothetical protein CJJ81176_0277 237275 - 235965 - | major facilitator superfamily protein CJJ81176_0278 237433 - 237278 - | hypothetical protein moaC 237526 - 237999 + | molybdenum cofactor biosynthesis protein C CJJ81176_0280 237977 - 238240 + | hypothetical protein TERM 263 238590 - 238574 - g 95 -6.7 -5.79588 | overlap 238565 TGAAAATCAAAAAAA TTTGATT AAA AATCAAA TCAGTGATAATTTTT TERM 264 238616 - 238636 + G 70 -4.1 -4.92783 | overlap 238623 TTTTTTTGAATTCGA GAATATTTT ACA AGAATGTTC TTTTTGTGATGAATT CJJ81176_0281 238254 - 239390 + | hypothetical protein TERM 265 239412 - 239388 - T 100 -10.2 -5.08011 | opp_overlap 239386 239391 239406 AAAATTGTTAAAAAA TAATATCCCA TTTTT TGGGATATTA AATATCTATTTCTAT xth 240189 - 239410 - | exodeoxyribonuclease III TERM 266 240259 - 240245 - H 70 -2.2 -5.47821 | ATCCATTTAAAAAAA TTCAAT AAA ATTAAA AGCTTAAATTTGAAG TERM 267 240454 - 240465 + G 71 -3 -5.19261 | GTGATTTGCTCTTTG CTTT TTAT AAAG TTTTTTACTAAATTT TERM 268 240935 - 240949 + G 70 -5.8 -4.3129 | opp_overlap 240933 240931 240935 GAGAAAACAATCACA CTAAAA AAC TTTTAG TTTTGGTAGTGGGTG TERM 269 241318 - 241306 - g 73 -3.5 -5.27335 | CCTTTTAAAGAAAAA TTAAA TCA TTTAA GTGATCAAAATATAA CJJ81176_0283 240286 - 241824 + | sulfatase, putative TERM 270 242124 - 242136 + G 71 -3.3 -5.27938 | GCAGTGTTTTTTAGT GTGCT TTT AGCTC TTTTTGTTTGGGGCT dgkA 241821 - 242177 + | diacylglycerol kinase TERM 271 242377 - 242357 - g 93 -4.1 -6.17268 | opp_overlap 242358, overlap 242358 TTAGAAGAAAAAAAA CTTTTTAAG CGT CTTAAAAAT GGATTTTATCAGCTA TERM 272 242376 - 242358 - g 79 -7.6 -4.27921 | opp_overlap 242358, overlap 242357 TAGAAGAAAAAAAAC TTTTTAAG CGT CTTAAAAA TGGATTTTATCAGCT CJJ81176_0285 242174 - 242419 + | hypothetical protein TERM 273 243338 - 243327 - g 73 -5.8 -4.68512 | opp_overlap 243326 TTAGAAGAAAAAGAA TGGC AAGT GCCA AATGTTTATGAAGAT pyrC 242409 - 243416 + | dihydroorotase TERM 274 243417 - 243439 + T 81 -9.2 -3.78141 | opp_overlap 243413 243411 CAATTAAAACATTGA TTTCCCACCT TAA AGGTGGAAAA TTTAAGCTTTATTTA CJJ81176_0287 243662 - 243441 - | hypothetical protein TERM 275 243530 - 243520 - G 74 -5.4 -4.88407 | overlap 243524 AATAAAGCAATAAAA CTGA CTA TCAG CGATAATAAACCAGC CJJ81176_0288 244437 - 243718 - | hypothetical protein TERM 276 243792 - 243815 + g 80 -6.8 -4.75219 | opp_overlap 243792 243795 TTTCAACAAAAGAAC TTACAGCTTC TTTA GAAGTTGTGA TTTTGTTCATGCTTA TERM 277 244509 - 244486 - R 95 -11.1 -4.18161 | opp_overlap 244491, overlap 244470 CATAAATTTTTAAAA TTCAAGCCC TTTTTT GGGCTTGAA TGACTAATTAAAACC CJJ81176_0289 246514 - 244517 - | methyl-accepting chemotaxis protein TERM 278 245083 - 245098 + g 72 -6.2 -4.28049 | TAGCTAAAGCATTAG CAAAGT CTGA ACTTTG TTTTAGCATTTTAAC TERM 279 246035 - 246049 + g 76 -7.8 -3.94381 | AGTTAAACCAACCTC TCCGCT AGC GGCGGA TTTATAAGGTTCTGT TERM 280 247079 - 247053 - g 73 -6 -4.68424 | overlap 247073 TAAGCGAGTTAAAAA TTTGTCCCTT GCCCCAA AAAGGACAAA ATCCTCCGAAATTTC CJJ81176_0290 246707 - 247582 + | zinc transporter ZupT TERM 281 247599 - 247582 - T 81 -9.9 -3.21276 | opp_overlap 247582, overlap 247580 TTTGCTTGGACAATA GAAAGCC TTGC GGCTTTC TTAAATTTAGTTCGC TERM 282 247582 - 247599 + T 82 -9.9 -3.33399 | opp_overlap 247582 247580 TTTGCTTGGACAATA GAAAGCC TTGC GGCTTTC TTAAATTTAGTTCGC CJJ81176_0291 250122 - 247606 - | biotin sulfoxide reductase CJJ81176_0292 250708 - 250133 - | putative cytochrome C-type haem-binding periplasmic protein TERM 283 250711 - 250689 - G 78 -6.4 -4.81212 | opp_overlap 250687 250689 250693, overlap 250693 GCTAGGACAACAAAA GAAATGAAAA TCT TTTTCATTAC TATTCCTTAATATAA TERM 284 250707 - 250693 - G 77 -5.8 -4.92812 | opp_overlap 250689 250687 250693, overlap 250689 GGACAACAAAAGAAA TGAAAA TCT TTTTCA TTACTATTCCTTAAT CJJ81176_0293 251698 - 251189 - | hypothetical protein CJJ81176_0294 252207 - 251698 - | hypothetical protein TERM 285 251895 - 251917 + g 73 -3.6 -5.23016 | overlap 251893 CAAAAATTTTAGCTG TAATTTTACA TTC TTTAAAATTA TTTTTTGAATTATTT TERM 286 252165 - 252153 - G 86 -2.7 -6.10295 | TGAAGAGAAAAAAAA CTAAT AAA ATCAG CATATAATCTACTAA CJJ81176_0295 253329 - 252241 - | SPFH domain-containing protein ilvE 254256 - 253342 - | branched-chain amino acid aminotransferase CJJ81176_0297 254432 - 254638 + | 4-oxalocrotonate tautomerase family protein CJJ81176_0298 254635 - 255090 + | anti-oxidant AhpCTSA family protein TERM 287 255153 - 255178 + G 70 -4.2 -4.91109 | gap 1, opp_overlap 255174 GAACTTAGAAAGACT TATCCTGATGA AAAAA TCAT-AGGATA TTTTTATGATCCAAA TERM 288 256117 - 256095 - g 76 -10 -2.78463 | AGCCCTGTGATTATA CTTGAAGAAA TTT TTCCTTCAAG ATATGAAGTGATAGC CJJ81176_0299 255090 - 256181 + | hypothetical protein TERM 289 256231 - 256245 + F 72 -4.4 -5.07971 | opp_overlap 256241, overlap 256241 AATTTTTAATGATTT TTTTAT ATA ATAAAA TTTTTAATTGTTTTC fabZ 256276 - 256716 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 256716 - 257507 + | UDP-N-acetylglucosamine acyltransferase clpX 257500 - 258723 + | ATP-dependent protease ATP-binding subunit mreB 258734 - 259774 + | cell shape-determining protein MreB CJJ81176_0304 259803 - 260513 + | rod shape-determining protein MreC TERM 290 261036 - 261014 - g 75 -4.2 -5.19212 | AGTATTATTAAAAAA GAAAAAATTG ATG CAATTTTGCC AACTATGGGTGGACA TERM 291 261200 - 261183 - g 88 -5.6 -5.54894 | AATGTATGAAAAAAA TTGGCA TGGATT TGCCAA AATCGATGTATGCGT TERM 292 262873 - 262852 - g 70 -3.8 -5.12617 | gap 1 CAATCAGCCAAAAAA TTCTACTGC AACAA GC-GTAGAA GAAGCGGTTCTTAAG TERM 293 263206 - 263190 - g 70 -3.7 -5.17353 | ATATCGATGAAAAAA TGCAAGA ATT TATTGCA CAAAAAACCGCAGAT carB 260774 - 264043 + | carbamoyl phosphate synthase large subunit TERM 294 264419 - 264385 - g 74 -8.8 -3.31726 | overlap 264383 264386 264397 GTTGCTGATATAATA CTTGATGAGAAATTTT TCG AAAATATCCCATCAAA AATATTAAAACTTTC TERM 295 264418 - 264386 - g 76 -10.1 -2.58822 | overlap 264385 264383 264397 TTGCTGATATAATAC TTGATGAGAAATTTT TCG AAAATATCCCATCAA AAATATTAAAACTTT CJJ81176_0306 264040 - 264462 + | hypothetical protein tal 265440 - 264463 - | transaldolase serB 266063 - 265440 - | phosphoserine phosphatase SerB TERM 296 265939 - 265957 + g 72 -8.8 -3.00451 | overlap 265936 265953 AAAAAATCAAGCTCT CCAGCCAT GGC ATGGCGGG TAATTTCGCTTGTTT cheW 266584 - 266063 - | purine-binding chemotaxis protein CheW cheA 268898 - 266589 - | chemotaxis protein CheA TERM 297 268406 - 268432 + g 75 -5.8 -4.70107 | opp_overlap 268406 268409, overlap 268409 CACTTAATTGATTAA CATCTACTTCAG GTT CAGGAGTAGTTG TTTCTTGTTTTGGTG TERM 298 268409 - 268429 + g 74 -6.1 -4.42118 | opp_overlap 268409 268406, overlap 268406 TTAATTGATTAACAT CTACTTCAG GTT CAGGAGTAG TTGTTTCTTGTTTTG cheV 269858 - 268902 - | chemotaxis protein CheV CJJ81176_0312 270486 - 269851 - | hypothetical protein TERM 299 270236 - 270222 - G 72 -2.8 -5.41143 | opp_overlap 270222 GAGGTGGTAAAAAAA TATCTC CGT GAGCTA ATTTTATAAAAGCAT greA 271104 - 270619 - | transcription elongation factor GreA lpxB 272210 - 271116 - | lipid-A-disaccharide synthase TERM 300 271608 - 271592 - G 81 -7.3 -4.58685 | opp_overlap 271592 271594 AAAGTTCTTTAAAAA TAGGCAT CAA ACGCCTA ATTTCACTACGCCTT TERM 301 272299 - 272280 - R 89 -10.8 -3.69283 | opp_overlap 272284 GAAGTTATGCAAGAA TACACGCT AAAA AGCGTGTA TGAAGGTTTATTCTC CJJ81176_0315 273059 - 272307 - | major antigenic peptide PEB3 TERM 302 273196 - 273158 - R 91 -9.9 -4.37971 | opp_overlap 273158 273157, overlap 273160 AAAATATTATTAAAA TCTAACTTTTGCTTG GTATTTTTG CAAGCAAAAGTTAAA ATTGTTATTGATGCT TERM 303 273194 - 273160 - R 78 -10.3 -2.51609 | opp_overlap 273158 273157, overlap 273158 AATATTATTAAAATC TAACTTTTGCTTG GTATTTTTG CAAGCAAAAGTTA AAATTGTTATTGATG CJJ81176_0316 274219 - 273323 - | glycerol-3-phosphate transporter, authentic frameshift TERM 304 274255 - 274240 - H 72 -6.2 -4.20932 | opp_overlap 274240 274235 AATATCTAGGTAAAA TTTCCT AAAG AGGAAA TTTAATAGCTTTTGC surE 274474 - 275250 + | stationary phase survival protein SurE CJJ81176_0318 275240 - 275893 + | thiF family protein TERM 305 275945 - 275908 - T 74 -7.3 -3.86311 | opp_overlap 275910, overlap 275910 275929 AGATTGAAATTTAAA TATTTATCTTAGATAAA TGAA TTTATCTAAGATAGAAA AAATTACAAAAATAG TERM 306 275943 - 275910 - T 84 -9.9 -3.51234 | opp_overlap 275910, overlap 275908 275929 ATTGAAATTTAAATA TTTATCTTAGATAAA TGAA TTTATCTAAGATAGA AAAAATTACAAAAAT panD 276348 - 275968 - | aspartate alpha-decarboxylase panC 277193 - 276345 - | pantoate--beta-alanine ligase TERM 307 276410 - 276400 - G 78 -6.8 -4.63218 | GTTTTTCCAACAAAA GCAG CCA CTGC TCCTAAAACATTATC TERM 308 276422 - 276432 + g 70 -4 -4.98616 | opp_overlap 276422, overlap 276431 CTGCTCCTAAAACAT TATC GGC GATA TTTTTAATATTTTCC panB 278028 - 277204 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase modC 279075 - 278185 - | molybdenum ABC transporter, ATP-binding protein modB 279753 - 279085 - | molybdenum ABC transporter, permease protein CJJ81176_0324 280051 - 279746 - | TOBE domain-containing protein modA 280893 - 280144 - | molybdenum ABC transporter, periplasmic molybdenum-binding protein CJJ81176_0326 281633 - 280947 - | biotin biosynthesis protein BioC TERM 309 281564 - 281533 - G 70 -6.2 -4.09511 | gap 1, overlap 281520 AACACTTTTTTAAAA TGCGAAATTTCTAAA TTT TTTA-AAATTTCACA AAGTTTTAAACCCAT CJJ81176_0327 282241 - 281630 - | hypothetical protein TERM 310 281692 - 281716 + g 75 -9.5 -3.04517 | opp_overlap 281692, overlap 281674 281691 281693 CATTTAGGAAAATAA GCTTTGAAAAA GTG TTTTTTAAAGC ATTTTGAGGAAAAAT TERM 311 281716 - 281692 - G 77 -7.3 -4.26327 | opp_overlap 281674 281691 281692 281693 CATTTAGGAAAATAA GCTTTGAAAAA GTG TTTTTTAAAGC ATTTTGAGGAAAAAT TERM 312 281839 - 281852 + g 73 -3.9 -5.33921 | TTAAATCTTTTTCAT CTTTA AAAA TAAAG TTTTTTGCTTCATTT TERM 313 282078 - 282100 + g 82 -10.8 -2.78495 | opp_overlap 282078, overlap 282075 GTGATTTTAGAAAAA GACTTTAAAT CAA ATTTAAAGTC TAAATTTTCATAATC TERM 314 282100 - 282078 - G 100 -10.8 -4.85599 | opp_overlap 282078 282075 GTGATTTTAGAAAAA GACTTTAAAT CAA ATTTAAAGTC TAAATTTTCATAATC bioF 283380 - 282238 - | 8-amino-7-oxononanoate synthase TERM 315 282668 - 282656 - G 71 -7.7 -3.5361 | overlap 282663 CAAGCACCCATAGAA GCAAG AGC CTTGC CAAAGGTAAAAACTA TERM 316 283178 - 283145 - G 74 -6.9 -4.26189 | gap 1 TCATAAATTGTAAAA TTTCCA-CTCAAGCTC CTT GAACTTGAGCTTGAAA AAAATAAGTCTTGTT TERM 317 284237 - 284207 - g 83 -10.6 -3.2794 | opp_overlap 284203 284202 TTGGACGCACAGGAA CTTTGTTTGCCTTA CAT CAATGCAAACAAAG CCCCGATTTTATCTG TERM 318 284501 - 284485 - g 78 -6.7 -4.67552 | opp_overlap 284484 284485 TTTATCAAAAAAGAA TTTTCAA GAC TTGAAAA ATTTGACTTTTTGGG bioA 283447 - 284730 + | adenosylmethionine--8-amino-7-oxononanoate transaminase bioD 285322 - 284717 - | dethiobiotin synthetase CJJ81176_0331 285646 - 285332 - | SMR family multidrug efflux pump TERM 319 285399 - 285388 - G 78 -3 -5.53991 | opp_overlap 285383 285388 CAGCGATTAAAAAAA GTTT CAAA AAAC TTTTACTTTCTTTAT CJJ81176_0332 285988 - 285650 - | SMR family multidrug efflux pump rplY 286122 - 286658 + | 50S ribosomal protein L25/general stress protein Ctc TERM 320 286705 - 286719 + G 71 -5.6 -4.51097 | opp_overlap 286704 286705 AGAGTATGAAAATAC CCGTCA TAA TGTCGG TTTTATGCTAATTGA pth 286655 - 287200 + | peptidyl-tRNA hydrolase TERM 321 287328 - 287343 + G 74 -6.2 -4.3821 | GATCTACCAAAAGCC GCAAAT CTTG ATTTGC TTTATGTTATGTTTT TERM 322 288070 - 288099 + G 89 -11.7 -2.81193 | opp_overlap 288075 288079, overlap 288066 288073 ATTATTTTTTTCCTG TAATAGCAAGATT TTTT AATCTTGCTATTG TAACTTTTGTAACTT TERM 323 288073 - 288096 + G 93 -11.2 -3.543 | opp_overlap 288075 288079, overlap 288070 288066 ATTTTTTTCCTGTAA TAGCAAGATT TTTT AATCTTGCTA TTGTAACTTTTGTAA TERM 324 288094 - 288075 - g 75 -9.4 -3.01712 | opp_overlap 288073 288070 288066, overlap 288079 TTTTTTCCTGTAATA GCAAGATT TTTT AATCTTGC TATTGTAACTTTTGT CJJ81176_0335 287202 - 288260 + | hypothetical protein lysA 288304 - 289512 + | diaminopimelate decarboxylase TERM 325 290098 - 290080 - g 77 -4.7 -5.31091 | opp_overlap 290090 GATAAGAAAACAAAA TTCAAAA ATCGA TTTTGAA GATATTAAAATCATT CJJ81176_0337 289514 - 290281 + | HAD family hydrolase pheA 290269 - 291342 + | chorismate mutase/prephenate dehydratase TERM 326 291470 - 291450 - g 73 -9.1 -2.56696 | overlap 291449 291448 CAAGTAATGAAAATC CTTTTGGTA CGC CACCAAAAG CCATAGAATGCTTAA TERM 327 292032 - 292056 + G 71 -8.7 -2.87003 | overlap 292028 GATTAGGAGGCTTAC GCATTGGTTAT GGT ATAGCTAATGC TAATATTATTAGTGC hisC 291332 - 292426 + | histidinol-phosphate aminotransferase TERM 328 294005 - 293993 - g 71 -3.4 -5.30155 | opp_overlap 293993 GCAGCAAGGAAAAAA GTTG AAGAA CAAC TTGGTTTTGGGGATA fliF 292478 - 294160 + | flagellar MS-ring protein TERM 329 294203 - 294228 + G 74 -6.9 -4.31835 | TGGTCTATGATGATT TATCGATGCCT GAGA AGGTAGCGATA TTTCTTATACAACTT fliG 294160 - 295188 + | flagellar motor switch protein G fliH 295196 - 296026 + | flagellar assembly protein H dxs 296019 - 297866 + | 1-deoxy-D-xylulose-5-phosphate synthase CJJ81176_0344 297952 - 298362 + | FUR family transcriptional regulator TERM 330 298384 - 298372 - f 72 -6.3 -4.34008 | opp_overlap 298371 298374 298380, overlap 298373 298374 298380 CATTAAGCAAAATAA GGTTA AAA TAACC CATATATTTTAAGGG TERM 331 298408 - 298374 - f 78 -10.3 -2.50508 | opp_overlap 298371 298374 298380, overlap 298372 298373 298380 TTAAGCAAAATAAGG TTAAAATAACCCATA TATTT TAAGGGTTATTTTAA TGGTTTATGAAATTC TERM 332 298374 - 298408 + F 79 -10.3 -3.02632 | opp_overlap 298372 298374 298373 298380, overlap 298371 298380 TTAAGCAAAATAAGG TTAAAATAACCCATA TATTT TAAGGGTTATTTTAA TGGTTTATGAAATTC TERM 333 298752 - 298764 + G 70 -3.5 -5.07107 | AGAGCCTAAAATTTG TATTT TAA AAATA TTTTTTCCAACTTTG TERM 334 298872 - 298886 + G 70 -5.8 -4.34402 | opp_overlap 298881 TATCGTTTTATATGG TTTTGA ATA TCAAAA TTTTGATATAGAGAA CJJ81176_0345 298408 - 299604 + | hypothetical protein TERM 335 299762 - 299751 - g 74 -3 -5.47218 | TTGTATTTAAAAAAA GATT TAAA AATC GCTGATATTGCCTGT TERM 336 299844 - 299834 - g 76 -2.6 -5.63857 | AAAAATGGAAAAAAA TATT CTA AATA TTAAAGGTATTGATC ubiE 299607 - 300314 + | ubiquinone/menaquinone biosynthesis methyltransferase xseA 300311 - 301474 + | exodeoxyribonuclease VII large subunit serC 301484 - 302560 + | phosphoserine aminotransferase CJJ81176_0349 302557 - 302907 + | endoribonuclease L-PSP family protein TERM 337 302917 - 302897 - T 86 -11.3 -3.27525 | opp_overlap 302901, overlap 302892 CTTTTGGAAAGCTAA GAGAGAATT AAA AATTCTCTC CTCCAAATTTTAAAA fabH 303878 - 302904 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 338 303791 - 303802 + g 72 -4.4 -5.03314 | overlap 303789 TGATCCATTCATCGG TGGT ATCT ACCA TTTTTTCAAGATCAG plsX 304857 - 303871 - | putative glycerol-3-phosphate acyltransferase PlsX rpmF 305009 - 304863 - | 50S ribosomal protein L32 TERM 339 304998 - 305008 + g 74 -3.2 -5.43621 | GCTCACTCTTCTCTT TGGT ACT GCCA TTTTTTCTCCTTTAT CJJ81176_0353 305386 - 305033 - | hypothetical protein ndk 305800 - 305387 - | nucleoside diphosphate kinase TERM 340 305901 - 305874 - R 73 -5.7 -4.59424 | opp_overlap 305874 305880 305897, overlap 305880 AAAGTTAAATTAAAA GAAAAAGCTAG GAATCT CTAGCTTTTTA ATTTTTTAAAATTAT TERM 341 305880 - 305895 + r 81 -5.4 -5.25735 | opp_overlap 305880 305874, overlap 305874 AAATTAAAAGAAAAA GCTAGG AATC TCTAGC TTTTTAATTTTTTAA TERM 342 305895 - 305880 - R 83 -4.7 -5.56372 | opp_overlap 305874 305880, overlap 305874 AAATTAAAAGAAAAA GCTAG GAATCT CTAGC TTTTTAATTTTTTAA CJJ81176_0355 306197 - 305913 - | ferredoxin, 4Fe-4S TERM 343 306244 - 306293 + H 79 -9.9 -2.88398 | gap 1, opp_overlap 306244 306252 306281, overlap 306252 306255 GATTTTAGCATAAAA TTCTTAAATAATGTAAA-TTTTGA TAA TCAAAAATTTACATTATTTGATAA TAATTATAACTTTCT TERM 344 306293 - 306244 - H 78 -7.7 -4.46926 | gap 1, opp_overlap 306244 306252 306255, overlap 306252 306281 GATTTTAGCATAAAA TTCTTAAATAATGTAAA-TTTTGA TAA TCAAAAATTTACATTATTTGATAA TAATTATAACTTTCT TERM 345 306285 - 306252 - H 81 -9.3 -3.67737 | gap 1, opp_overlap 306252 306244 306255, overlap 306244 306281 CATAAAATTCTTAAA TAATGTAAA-TTTTGA TAA TCAAAAATTTACATTA TTTGATAATAATTAT TERM 346 306252 - 306285 + H 81 -9.3 -3.82433 | gap 1, opp_overlap 306244 306252 306281, overlap 306244 306255 CATAAAATTCTTAAA TAATGTAAA-TTTTGA TAA TCAAAAATTTACATTA TTTGATAATAATTAT TERM 347 306255 - 306282 + H 70 -6.6 -4.03141 | gap 1, opp_overlap 306252 306244 306281, overlap 306252 306244 AAAATTCTTAAATAA TGTAAA-TTTTGA TAA TCAAAAATTTACA TTATTTGATAATAAT TERM 348 306518 - 306533 + G 71 -4.8 -4.81644 | overlap 306527 AAGGAGCGGTAGTAT TCTTTT ATCC AAAAGA TTTTACTTTTGTTTG CJJ81176_0356 306403 - 306999 + | anti-oxidant AhpCTSA family protein TERM 349 307028 - 307014 - f 71 -7.1 -3.96327 | opp_overlap 307014 ATTTCTTAGTATAAA GCCTC TTTAC GAGGC TTTTTCTTCATTTTT TERM 350 307014 - 307028 + F 95 -7.1 -5.30199 | opp_overlap 307014 ATTTCTTAGTATAAA GCCTC TTTAC GAGGC TTTTTCTTCATTTTT TERM 351 307508 - 307520 + G 82 -6.3 -5.26875 | opp_overlap 307499 307508 ATCAATCCTCTAAAA GGTTT AAA AAACC TTTTTTCATTGAAAA TERM 352 307520 - 307508 - g 70 -6.3 -4.11751 | opp_overlap 307508, overlap 307499 ATCAATCCTCTAAAA GGTTT AAA AAACC TTTTTTCATTGAAAA TERM 353 307691 - 307710 + G 90 -7.2 -5.37865 | opp_overlap 307679 AGAGCTATTGTTTTA GCAGCTAT TGTT ATAGTTGC TTTTTTAATTATTGC TERM 354 308228 - 308198 - g 76 -2.7 -5.63103 | GGTCAAGTAAAAAAA GAAACTAAAAC TTTTAAGGT GCTTTAGTTCC TATTTTGTTAATAAG flhB 307118 - 308224 + | flagellar biosynthesis protein FlhB motB 308954 - 308211 - | flagellar motor protein MotB TERM 355 308903 - 308867 - G 100 -8.7 -5.20606 | opp_overlap 308898 AAAGAGCAATAAAAA GTGCCAAAAGCAAACTT AGA AAGTCTGCATAAGGCAC AGCCCATTTTTCACC CJJ81176_0359 309733 - 308957 - | flagellar motor protein MotA polA 312388 - 309749 - | DNA polymerase I CJJ81176_0361 312552 - 312764 + | major facilitator family transporter CJJ81176_0362 312848 - 312964 + | inner membrane metabolite transport protein YdfJ CJJ81176_0363 313004 - 313912 + | inner membrane metabolite transport protein YdfJ CJJ81176_0364 313909 - 314916 + | inosine-uridine preferring nucleoside hydrolase family protein CJJ81176_0365 315315 - 314872 - | hypothetical protein TERM 356 315091 - 315101 + g 81 -2.6 -5.79595 | opp_overlap 315091 GGATTTGCTAAAGTA TTTT TCT AAAA TTTTTTCTTTTCCAA uvrA 318145 - 315320 - | excinuclease ABC subunit A TERM 357 315363 - 315378 + g 85 -2.5 -5.86465 | AAGTCTAGATAATAT CCTGT GTAAGA ACGGG TTTTTTTGTGTTCTT TERM 358 316087 - 316098 + g 71 -7.2 -3.73775 | TTGAACGTGGTGTGC GCCC AATT GGGC TTTGATCAAGATAAA TERM 359 316537 - 316547 + g 71 -4.6 -4.81863 | GCTCTACGACAATTA GGGT ATT GCCC TTTTGTTGTAAATTT TERM 360 318220 - 318199 - R 71 -5.9 -4.50841 | overlap 318202 ATAATAATATTAAAA GAACTTGGA TAAA TCCAAGTTA AAAATTTATAAAATT TERM 361 318217 - 318202 - R 77 -7.6 -4.33487 | overlap 318199 ATAATATTAAAAGAA CTTGGA TAAA TCCAAG TTAAAAATTTATAAA CJJ81176_0367 319003 - 318218 - | hypothetical protein TERM 362 319061 - 319076 + H 75 -3.3 -5.61596 | overlap 319048 319057 TTTTATCTTATTAAG CTAAG TATTAT CTTAG TTTTTTTATAACAAT TERM 363 319137 - 319164 + G 75 -5.9 -4.74598 | opp_overlap 319137 319147 AAAAATGTTTCAAAA TATTATAAAAT ATAAAG ATTTTATAATA TTTATTTTAAATTTA CJJ81176_0368 319126 - 319251 + | hypothetical protein trpE 319416 - 320666 + | anthranilate synthase component I trpD 320663 - 322264 + | anthranilate synthase component II trpF 322251 - 322850 + | N-(5'phosphoribosyl)anthranilate isomerase TERM 364 323377 - 323387 + G 72 -2.6 -5.42131 | overlap 323380 AGCTTGGGTTGGAGA TATT AAA AATA TTTTTTATGTGGTTG trpB 322847 - 324025 + | tryptophan synthase subunit beta trpA 324018 - 324767 + | tryptophan synthase subunit alpha CJJ81176_0374 324838 - 325260 + | hypothetical protein fliN 325260 - 325568 + | flagellar motor switch protein TERM 365 326329 - 326288 - g 75 -4.2 -5.20633 | gap 1, opp_overlap 326288 326286 AAAAACAGAGAAAAA TTTTG-ATTCTTTTTTT GAAGAGAAT AAAAAAAGAATTCAAAA TCTTATAGAGCAGCG CJJ81176_0376 325569 - 326366 + | hypothetical protein CJJ81176_0377 327823 - 326363 - | Ppx/GppA family phosphatase TERM 366 326833 - 326821 - G 76 -6.3 -4.58283 | TAAGGGTTGTAAAAA TTTGC AGA GCAAA ATGTGGAGTTTTATT TERM 367 327364 - 327374 + g 72 -2.6 -5.4505 | opp_overlap 327364 GAGATATGCAAGAAA TAAT TCT ATTA TTTTTTATTAAACAC CJJ81176_0378 328068 - 327823 - | ferredoxin, 4Fe-4S TERM 368 328179 - 328155 - R 71 -5.7 -4.52349 | opp_overlap 328157, overlap 328156 328157 AGAAATAAAGATAAA TTTTTTGCACC GAA GGTGCAAAATT GTTAAGATTTTTTAG TERM 369 328178 - 328156 - R 75 -9.2 -3.28969 | opp_overlap 328157, overlap 328155 328157 GAAATAAAGATAAAT TTTTTGCACC GAA GGTGCAAAAT TGTTAAGATTTTTTA TERM 370 328177 - 328157 - R 95 -12.7 -2.55755 | opp_overlap 328157, overlap 328156 328155 AAATAAAGATAAATT TTTTGCACC GAA GGTGCAAAA TTGTTAAGATTTTTT TERM 371 328157 - 328177 + r 100 -12.7 -3.75617 | opp_overlap 328157 328156 328155 AAATAAAGATAAATT TTTTGCACC GAA GGTGCAAAA TTGTTAAGATTTTTT CJJ81176_0379 328852 - 328181 - | DNA-binding response regulator CJJ81176_0380 329248 - 328931 - | FolB domain-containing protein CJJ81176_0381 329841 - 329233 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 372 329955 - 329977 + H 73 -3.6 -5.28942 | AGTATTAATTAATTG TAAATATTTT TTA ATAATATTTA TTTTTATTTAAGCTC ccpA-2 330036 - 331061 + | cytochrome c551 peroxidase TERM 373 331065 - 331098 + F 90 -8.3 -4.68511 | opp_overlap 331071 331074, overlap 331071 CCTGAACTATAAGGT TCCAAACAAGCTCTA TTTT TAGAGCTTGTTTAAA TTTCTTTATCTTAGC TERM 374 331071 - 331092 + F 100 -11.7 -3.97446 | opp_overlap 331071 331074, overlap 331065 CTATAAGGTTCCAAA CAAGCTCTA TTTT TAGAGCTTG TTTAAATTTCTTTAT TERM 375 331092 - 331071 - f 91 -11.7 -3.58533 | opp_overlap 331071 331065, overlap 331074 CTATAAGGTTCCAAA CAAGCTCTA TTTT TAGAGCTTG TTTAAATTTCTTTAT TERM 376 331089 - 331074 - f 74 -7.6 -3.9243 | opp_overlap 331071 331065, overlap 331071 TAAGGTTCCAAACAA GCTCTA TTTT TAGAGC TTGTTTAAATTTCTT glmM 331137 - 332492 + | phosphoglucosamine mutase lspA 332485 - 332955 + | lipoprotein signal peptidase CJJ81176_0385 332939 - 333391 + | hypothetical protein CJJ81176_0386 334734 - 333388 - | coproporphyrinogen III oxidase TERM 377 334823 - 334801 - H 79 -8 -3.88442 | opp_overlap 334797 334793 TAAAATAGGAGTAAA TTTTTTATTT CTT AAATAAAAAA TGGGATTAAGTTTTT CJJ81176_0387 334863 - 335114 + | hypothetical protein TERM 378 335148 - 335119 - T 83 -11 -2.53759 | overlap 335130 AAGATTTTTAATTTA TTTAGAGAATAG AACAAA CTATTCTCTAAA AGACATATCTAAATT cmeC 336615 - 335137 - | RND efflux system, outer membrane lipoprotein CmeC TERM 379 336153 - 336168 + g 71 -9 -2.78032 | overlap 336152 336167 AGCCTGATTTTGAGG CGCGAT ATGT ATCGCG ATATTTTCCCCAAAG cmeB 339730 - 336608 - | RND efflux system, inner membrane transporter CmeB TERM 380 339581 - 339595 + g 71 -7.2 -3.70902 | overlap 339579 TGCATCAGCTCCTGT GTAAGT TGC ACTTAC TTTAACTGTAGGAGG cmeA 340833 - 339730 - | RND efflux system, membrane fusion protein CmeA CJJ81176_0391 341560 - 340928 - | TetR family transcriptional regulator CJJ81176_0392 342923 - 341547 - | iron-sulfur cluster-binding domain-containing protein TERM 381 343166 - 343145 - g 77 -4.5 -5.22039 | opp_overlap 343149 CGTAAATTCAAAAAA CAAGTAGAT AGAA ATCTAGTTG TAACTGAAGTAAGAG rpsU 343082 - 343294 + | 30S ribosomal protein S21 TERM 382 343302 - 343313 + TF 100 -7.2 -5.76633 | opp_overlap 343302 GACTCTAACCCAAAA GCCC GAAA GGGC TTTTTTTATATCTAC TERM 383 343313 - 343302 - Tf 77 -7.2 -4.2803 | opp_overlap 343302 GACTCTAACCCAAAA GCCC GAAA GGGC TTTTTTTATATCTAC CJJ81176_0394 343437 - 343291 - | colicin E1 immunity protein TERM 384 343537 - 343547 + GH 78 -6.8 -4.58466 | opp_overlap 343536 AATCAAGCAGCTAAT GCTC AAG GAGC TTTTGTAATTATCGA CJJ81176_0395 343411 - 344016 + | hypothetical protein CJJ81176_0396 344026 - 345195 + | glutathionylspermidine synthase family protein CJJ81176_0397 345198 - 346133 + | 2-hydroxyacid dehydrogenase TERM 385 346545 - 346531 - g 77 -7.2 -4.25104 | overlap 346514 CGTGTTGTAGCAAAA CAAATC GAT GATTTG CAAGCTGTGATGAAG CJJ81176_0398 346123 - 346614 + | nucleotide-binding protein CJJ81176_0399 346623 - 347099 + | putative lipoprotein CJJ81176_0400 347110 - 347934 + | hypothetical protein TERM 386 348718 - 348739 + G 91 -4.5 -5.95946 | overlap 348734 ATGAATATTTAAATG CTTTTGGAG ATAT TTCTAAAAG TTTTTTTATTATTGA TERM 387 348951 - 348939 - g 82 -4.1 -5.55695 | overlap 348941 CAACAAGATAAAAAA GTCCT AGA AAGAC TTCATTCTTGGGGTA TERM 388 349612 - 349602 - g 72 -4 -5.06585 | overlap 349611 GAAAGCATACAAAAA GAAT TAA ATTC AAGTTTTGATAAAAG CJJ81176_0401 347934 - 349646 + | ATPase, AAA family protein CJJ81176_0402 350183 - 349611 - | hypothetical protein TERM 389 350123 - 350100 - G 81 -8.3 -4.26881 | opp_overlap 350099, overlap 350095 TTTTACAAAATCAAA GGCTTTTAT GATATG ATAAAAGCC ATAGATTAAACTTAT CJJ81176_0403 351076 - 350183 - | putative sulfite oxidase subunit YedY pyrF 351811 - 351131 - | orotidine 5'-phosphate decarboxylase nusB 352206 - 351808 - | transcription antitermination protein NusB ribH 352670 - 352206 - | riboflavin synthase subunit beta kdsA 353482 - 352667 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 390 353273 - 353289 + g 71 -4.5 -4.83593 | CATACCAAATTCATC TTTTACG CTT TGTAAAA TTTTTAATCCTTCTT CJJ81176_0408 354411 - 353479 - | integral membrane protein TERM 391 354739 - 354727 - g 81 -2.7 -5.82388 | AAATGTGAAAAAAAA CACTT TAA AAGTA GCTAAAGAAAGCGAT TERM 392 355191 - 355211 + G 70 -8.3 -3.16191 | overlap 355184 TTGTAAGTTCTATCG CAGGAACTA CTA TAGATCCTG TTAATGAAAGTGTAG engA 354512 - 355894 + | GTP-binding protein EngA aroK 355881 - 356378 + | shikimate kinase TERM 393 356552 - 356562 + G 75 -4.6 -5.055 | opp_overlap 356552 CAAAATTCCTTAAAA GCTG CTG CGGC TTTTTTAAGCCTTGG TERM 394 357079 - 357050 - g 91 -9.6 -4.30441 | overlap 357062 TTAGAAGATCCAAAA GATTTTAAAAAC TGCAAT GTTTTTAAAATC GCAAAGCTTTTTTTA trpS 356375 - 357334 + | tryptophanyl-tRNA synthetase TERM 395 358465 - 358454 - g 74 -3 -5.37865 | CGAACAAGGAAAAAA TGAA CTTG TTCA CACTCTTAATGGCTC serS 357345 - 358580 + | seryl-tRNA synthetase CJJ81176_0413 358590 - 361052 + | TPR domain-containing protein TERM 396 361085 - 361046 - T 100 -17.6 -3.7732 | opp_overlap 361056, overlap 361056 TTTTGATATTAATAA CAACTAAAAATGCTTAGA AATT TCTAAGCATTTTTAGTTA AGCTTGAAGATCTAG TERM 397 361075 - 361056 - T 100 -9.4 -5.03201 | opp_overlap 361056, overlap 361046 AATAACAACTAAAAA TGCTTAGA AATT TCTAAGCA TTTTTAGTTAAGCTT TERM 398 361056 - 361075 + T 100 -9.4 -4.87893 | opp_overlap 361056 361046 AATAACAACTAAAAA TGCTTAGA AATT TCTAAGCA TTTTTAGTTAAGCTT CJJ81176_0414 361718 - 361083 - | hypothetical protein TERM 399 361781 - 361813 + r 100 -10.9 -4.79352 | opp_overlap 361778 361781 361783 361788, overlap 361775 AAAAATTTATAAGGA CATTAAATTCCTT ATTTTCA AAGGAATTTAATG TTTTATTGTAGATAA TERM 400 361813 - 361781 - R 82 -10.9 -2.8967 | opp_overlap 361775 361781, overlap 361778 361783 361788 AAAAATTTATAAGGA CATTAAATTCCTT ATTTTCA AAGGAATTTAATG TTTTATTGTAGATAA pyk 363258 - 361816 - | pyruvate kinase TERM 401 362596 - 362617 + g 74 -6.7 -4.35042 | opp_overlap 362584, overlap 362588 362597 AAATTTTTCAATTTT TGCAAAAAT AGAT ATTTTTGCG TTATTTTGTGCTAAA TERM 402 362819 - 362801 - G 70 -3.9 -5.0538 | TTTGAGTTTAAAAAA CCATCAT TTTCT ATAATGG TTTCAATTTTTTGAT TERM 403 362906 - 362916 + g 70 -4 -4.90869 | opp_overlap 362906 TCAATTTTTAACATA TCTA AAA TAGA TTTTTGATTAATACT CJJ81176_0416 364653 - 363307 - | malate:quinone oxidoreductase, putative CJJ81176_0417 365401 - 364772 - | pantothenate kinase CJJ81176_0418 365678 - 365388 - | tram-like protein TERM 404 365626 - 365649 + g 87 -8.3 -4.69324 | opp_overlap 365623 ATACTTAAGTCATAG GGCTTTAAA TTTAAT TTTAAAGCC TTTATTGTTTGTTCT CJJ81176_0419 366673 - 365675 - | putative lipoprotein CJJ81176_0420 367248 - 366670 - | hypothetical protein TERM 405 367161 - 367144 - G 73 -5.7 -4.65446 | opp_overlap 367144, overlap 367137 AGCAGATATATAAAA TTTATAC TTGC GTATAAA TCTCTCTCCTTTGAT gatC 367392 - 367676 + | aspartyl/glutamyl-tRNA amidotransferase subunit C CJJ81176_0422 367745 - 368308 + | cvpA family protein TERM 406 368541 - 368560 + G 74 -6.5 -4.4078 | opp_overlap 368541 TTACTTGAAGAAGCA GAAATGG TAACTT CCATTTC TTTTGGTTCAGCAGG fur 368310 - 368783 + | ferric uptake regulation protein lysS 368784 - 370289 + | lysyl-tRNA synthetase TERM 407 370788 - 370769 - g 88 -4.4 -5.75538 | gap 1 GCTAAAAAAGAAAAA CCA-AAACT TAT AGTTTGTGG AGCTAGTGCTTATGC glyA 370286 - 371530 + | serine hydroxymethyltransferase TERM 408 371546 - 371573 + G 74 -7.2 -3.88232 | gap 1, opp_overlap 371544, overlap 371548 TTTCACCAATGGATA TG-TCGCTAATTA AAA TAATTGGCGATCA TTATTATATAAGACG TERM 409 371548 - 371570 + G 77 -10 -3.01243 | opp_overlap 371544, overlap 371546 TCACCAATGGATATG TCGCTAATTA AAA TAATTGGCGA TCATTATTATATAAG CJJ81176_0427 371527 - 372306 + | hypothetical protein TERM 410 372401 - 372383 - g 74 -5.4 -4.91084 | AATAAAAGTGAAAAA GTAAAAAA AAT TCTTTTAC GAGTTATTGCTTTAG CJJ81176_0428 372320 - 373156 + | hypothetical protein TERM 411 373218 - 373246 + G 100 -11.2 -3.87373 | gap 1, opp_overlap 373218, overlap 373239 TAGAATGCATAATAA TGCTATCAAAGCC TTAG GGCTT-GATAGCA TTTATACACGCTATC TERM 412 373246 - 373218 - g 95 -11.2 -3.85879 | gap 1, opp_overlap 373218 373239 TAGAATGCATAATAA TGCTATCAAAGCC TTAG GGCTT-GATAGCA TTTATACACGCTATC aroE 373153 - 373941 + | shikimate 5-dehydrogenase TERM 413 373963 - 373975 + T 80 -4.9 -5.36441 | overlap 373953 AGTTATTTTTTTGTA TAAGA AAA TCTTA TTTTTTGTGTGAGAA TERM 414 373981 - 374009 + T 71 -6.1 -4.54821 | overlap 373982 373983 GAAAATCTTATTTTT TGTGTGAGAAAGT TTA ATTTTCTCACAAG TTTTATCATTCAAAT TERM 415 373983 - 374007 + T 82 -10.9 -2.5882 | overlap 373982 373981 AAATCTTATTTTTTG TGTGAGAAAGT TTA ATTTTCTCACA AGTTTTATCATTCAA CJJ81176_0430 374914 - 374015 - | putative lipoprotein lgt 375004 - 375819 + | prolipoprotein diacylglyceryl transferase frdC 375889 - 376671 + | fumarate reductase cytochrome b-556 subunit TERM 416 378074 - 378055 - g 74 -8 -3.86975 | overlap 378050 AGAAGGTAAACATAA TGTTTTTG AAAT CAAAAACA GAATGAAAGAAATCA frdA 376655 - 378646 + | fumarate reductase flavoprotein subunit sdhB 378639 - 379364 + | fumarate reductase iron-sulfur subunit TERM 417 379366 - 379389 + F 77 -9 -3.30338 | gap 1, opp_overlap 379366, overlap 379368 AAAGAAATAAATAAA TCTTTCCCCTT TTT AAGGGG-AAGA TTGTGAAAGAATTAT TERM 418 379389 - 379366 - f 93 -9 -4.88895 | gap 1, opp_overlap 379366 379368 AAAGAAATAAATAAA TCTTTCCCCTT TTT AAGGGG-AAGA TTGTGAAAGAATTAT TERM 419 379368 - 379388 + F 81 -10.5 -2.57881 | opp_overlap 379366, overlap 379366 AGAAATAAATAAATC TTTCCCCTT TTT AAGGGGAAG ATTGTGAAAGAATTA TERM 420 379934 - 379948 + G 70 -3.6 -5.07107 | opp_overlap 379922 379921, overlap 379921 AAGTCTTTTAAATGC TCTTTT AAA AGAAGA TTTTTTAGGGGTTTC CJJ81176_0435 379392 - 381578 + | GTP-binding protein TERM 421 381994 - 381982 - g 72 -6.3 -4.34912 | opp_overlap 381981 381982, overlap 381979 AATGAAGTAAAACAA GCAAA AAG TTTGC ATATTTTTGCACCCA CJJ81176_0436 381688 - 383397 + | GTP-binding protein TERM 422 383892 - 383914 + G 75 -4.1 -5.20333 | opp_overlap 383882 383892 GGAGAGCTTGTTAAA GCAAGTGTA AAATC TGCTCTTGC TTTTTATTCTAAATC CJJ81176_0437 383397 - 384101 + | hypothetical protein TERM 423 384088 - 384109 + F 76 -6.7 -4.5287 | opp_overlap 384088 TTAATTCTAAAGATA TAGAGCTTT ATTA AAAGTTCTA TTTTCATTACTTTCA CJJ81176_0438 384237 - 384965 + | hypothetical protein CJJ81176_0439 384967 - 386688 + | oxidoreductase, putative TERM 424 386688 - 386728 + F 77 -5 -5.17786 | gap 1, opp_overlap 386695, overlap 386689 386692 386694 386695 AAAAAGCTTAGCTTG ATAATAA-CTTGAGAGTTT TTGA AAACTCTCAAGATTATAAA TTTTTAATTTTCTTC TERM 425 386689 - 386727 + F 79 -8.5 -3.68231 | gap 1, opp_overlap 386695, overlap 386688 386692 386694 386695 AAAAGCTTAGCTTGA TAATAA-CTTGAGAGTTT TTGA AAACTCTCAAGATTATAA ATTTTTAATTTTCTT TERM 426 386692 - 386724 + F 79 -10.2 -2.91298 | gap 1, opp_overlap 386695, overlap 386689 386688 386694 386695 AGCTTAGCTTGATAA TAA-CTTGAGAGTTT TTGA AAACTCTCAAGATTA TAAATTTTTAATTTT TERM 427 386694 - 386721 + F 84 -10 -3.56762 | opp_overlap 386695, overlap 386692 386689 386688 386695 CTTAGCTTGATAATA ACTTGAGAGTTT TTGA AAACTCTCAAGA TTATAAATTTTTAAT TERM 428 386695 - 386720 + F 100 -13.5 -2.72973 | opp_overlap 386695, overlap 386694 386692 386689 386688 TTAGCTTGATAATAA CTTGAGAGTTT TTGA AAACTCTCAAG ATTATAAATTTTTAA TERM 429 386720 - 386695 - f 100 -13.5 -3.79906 | opp_overlap 386695 386694 386692 386689 386688 TTAGCTTGATAATAA CTTGAGAGTTT TTGA AAACTCTCAAG ATTATAAATTTTTAA CJJ81176_0440 386977 - 387168 + | hypothetical protein CJJ81176_0441 387972 - 387247 - | hypothetical protein CJJ81176_0442 388079 - 388441 + | HIT family protein TERM 430 388464 - 388478 + F 72 -4.4 -5.0916 | opp_overlap 388474, overlap 388474 TAATGATTTGTTATG TTTTAT CTA ATAAAA TTTTTATATTGAAAA CJJ81176_0443 388515 - 389087 + | hypothetical protein TERM 431 389094 - 389116 + TF 95 -11.4 -3.98009 | GAAAAATAATTTTTA GCCTAAGAGT TTA ATTCTTAGGC TTTGTAAACTTTTAT CJJ81176_0444 390047 - 389091 - | hypothetical protein CJJ81176_0445 390020 - 390169 + | hypothetical protein TERM 432 390638 - 390654 + G 76 -6.7 -4.39989 | GAAAAAATTTTAAGT TCTTTAA AGA TTAAAGA TTTTGATGCTTTGAT CJJ81176_0446 390215 - 391792 + | ABC transporter, ATP-binding protein CJJ81176_0447 391785 - 392117 + | hypothetical protein CJJ81176_0448 392193 - 392576 + | hypothetical protein TERM 433 392577 - 392604 + T 93 -10.8 -3.90291 | gap 1, opp_overlap 392577 392583, overlap 392578 392583 TTGAACGCAATTTAA T-CAAAAGCTCCA TTT TGGAGCTTTTGTA TTTACTTGCAAGAAT TERM 434 392603 - 392577 - T 91 -12.4 -3.20991 | opp_overlap 392577 392578 392583, overlap 392583 TTGAACGCAATTTAA TCAAAAGCTCCA TTT TGGAGCTTTTGT ATTTACTTGCAAGAA TERM 435 392578 - 392602 + T 100 -15.9 -3.54146 | opp_overlap 392577 392583, overlap 392577 392583 TGAACGCAATTTAAT CAAAAGCTCCA TTT TGGAGCTTTTG TATTTACTTGCAAGA TERM 436 392597 - 392583 - T 91 -10 -4.45664 | opp_overlap 392578 392577 392583, overlap 392577 GCAATTTAATCAAAA GCTCCA TTT TGGAGC TTTTGTATTTACTTG TERM 437 392583 - 392597 + T 100 -10 -4.84539 | opp_overlap 392583 392577, overlap 392578 392577 GCAATTTAATCAAAA GCTCCA TTT TGGAGC TTTTGTATTTACTTG CJJ81176_0449 393204 - 392620 - | hypothetical protein TERM 438 392794 - 392774 - G 74 -6.3 -4.39347 | overlap 392775 AAAAAATATTCAAAA CGATTTAAA TTT TTTAAATCA ATAGCAATGGATATA TERM 439 394223 - 394240 + G 93 -5.7 -5.69023 | opp_overlap 394215 394222 TAAGGTATAAAATCT TTATAGA ATGT TCTATAA TTTTTTTGATATTTT CJJ81176_0450 393331 - 394557 + | hypothetical protein TERM 440 395128 - 395118 - g 75 -4 -5.22312 | ATGCATATGAAAAAA CTTT AGC AAAG AATAATTCAGATTGC CJJ81176_0451 394550 - 395287 + | hypothetical protein TERM 441 395473 - 395503 + T 72 -3.4 -5.30686 | opp_overlap 395497, overlap 395474 ATTTTATAAATTAAC TCTTTTGGTTTTTA TTT TATAAACTAAAAGC TTTTTTATAAATCTT TERM 442 395720 - 395698 - T 95 -7.9 -4.99435 | opp_overlap 395698 TCTAATAATTAAAAA GATTAAAAG CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 443 395698 - 395720 + T 79 -7.9 -3.85891 | opp_overlap 395698 TCTAATAATTAAAAA GATTAAAAG CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 444 395748 - 395729 - T 72 -8 -3.31322 | TTTAATCTTTCATAA CTTTTTCT TTGA AGAAAAAG ATTAAACTATCTATA TERM 445 395784 - 395748 - T 77 -5.3 -5.06414 | opp_overlap 395755 TTCTTTGAAGAAAAA GATTAAACTATCTATAA TTT TTATGGAGAGTTTGATC CTGGCTCAGAGTGAA TERM 446 397244 - 397261 + T 74 -9.1 -3.07291 | opp_overlap 397244 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 447 397728 - 397748 + T 78 -6.9 -4.56187 | overlap 397730 TAATATATATACTTC CTTTAGGTT TTA AACCTAATG TTCTTTTTAATTATC TERM 448 397730 - 397746 + T 79 -8.1 -3.86437 | overlap 397728 ATATATATACTTCCT TTAGGTT TTA AACCTAA TGTTCTTTTTAATTA TERM 449 398287 - 398270 - T 91 -11.3 -3.66803 | opp_overlap 398269 398268, overlap 398263 GCGCAAGAGGGCAAA CCCAGTG CTTG CACTGGG GGTTGTAGGACTGCA TERM 450 401072 - 401082 + T 70 -5.4 -4.57341 | AATAAAGCATCACTT CCTT GTT AAGG TTTTTAAGAAAGCTT CJJ81176_0456 401303 - 401151 - | hypothetical protein murD 402840 - 401632 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 451 402030 - 402046 + g 88 -5.9 -5.53288 | TATTTTGACTGTCTT TAAGCTC TTC GAGTTTA TTTTTTTCCATTACA TERM 452 402211 - 402225 + g 70 -5 -4.6759 | TTTTTCATCTTCATA GCTTAT TTT ATGAGC TTTTGTTGGAGTATT mraY 403901 - 402840 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 453 403465 - 403445 - G 74 -5.3 -4.98758 | AAAAAGGTATAAAAA GTTCCGTGC TAA GCTCTGAAC TAAAATATAAAGGTA TERM 454 403845 - 403833 - G 75 -4.1 -5.33866 | TAAAGCGATAAAAAA TGCAA AGC CTGCA CGCACACTAATATAA TERM 455 405242 - 405231 - g 72 -4.4 -5.06103 | opp_overlap 405231 405226 AGAATGTGCAAAAAA GCAT GATT ATGC TTTTATCATTACAAG pgm 403981 - 405459 + | phosphoglyceromutase fabG 405531 - 406274 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 456 406432 - 406408 - g 70 -5.1 -4.60797 | TTGTGAGAGATAAAA TTTATTTTTGC ACA GCAAATACAAA AGGACTTTTTAAGCA CJJ81176_0462 406284 - 406691 + | hypothetical protein TERM 457 406712 - 406754 + F 70 -2.3 -5.54403 | opp_overlap 406712 406717 406719 406723, overlap 406713 406717 TGATAATTTTATTAA CTATATATTAATTAAGATA AATAA TATCTTAATTAATATTAAC TTTTTGTTATTTTTT TERM 458 406717 - 406749 + F 89 -11 -3.53262 | opp_overlap 406712 406717 406719 406723, overlap 406713 406712 ATTTTATTAACTATA TATTAATTAAGATA AATAA TATCTTAATTAATA TTAACTTTTTGTTAT TERM 459 406749 - 406717 - f 85 -11 -2.93901 | opp_overlap 406717 406713 406712, overlap 406712 406719 406723 ATTTTATTAACTATA TATTAATTAAGATA AATAA TATCTTAATTAATA TTAACTTTTTGTTAT TERM 460 406747 - 406719 - f 74 -9.2 -3.02096 | opp_overlap 406717 406713 406712, overlap 406717 406712 406723 TTTATTAACTATATA TTAATTAAGATA AATAA TATCTTAATTAA TATTAACTTTTTGTT sdhA 407028 - 408863 + | succinate dehydrogenase, flavoprotein subunit TERM 461 408955 - 408984 + G 72 -8.1 -3.36283 | overlap 408953 AAAAACTCTGCTCTC TCTTTTGCTTTTT ATTA AAAAAACAAAAGA TATTACTTTGAATTT sdhB 408860 - 409825 + | succinate dehydrogenase, iron-sulfur protein subunit sdhC 409829 - 410686 + | succinate dehydrogenase, C subunit TERM 462 410690 - 410708 + TF 84 -10.3 -3.65084 | opp_overlap 410690 AAAATTGCATAAAAA CATGGGC AAAAA GCCCATG TTTAAAGATTTAATT TERM 463 410708 - 410690 - Tf 100 -10.3 -4.90296 | opp_overlap 410690 AAAATTGCATAAAAA CATGGGC AAAAA GCCCATG TTTAAAGATTTAATT CJJ81176_0466 411375 - 410710 - | TenA/Thi-4 family protein TERM 464 411344 - 411374 + gF 73 -5.6 -4.60053 | overlap 411335 GCATTCCAAATTTTT TGATTTTCTTTGAT TAA ATTAGAGAAAAGCA TTATTTTTCCTTTAT CJJ81176_0467 411353 - 411469 + | hypothetical protein acpP 411488 - 411721 + | acyl carrier protein fabF 411747 - 412961 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 465 413081 - 413070 - g 71 -3 -5.28942 | GATTTTAAAGAAAAA TCTT GAAA AAGA AATTTCTAAAACTTA accA 412963 - 413901 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 466 414048 - 414030 - g 71 -7.6 -3.52204 | TTATTTTTAAAGGAA TTAATTTG ACT CAAATTAA AAATATGAAATTTAA TERM 467 415960 - 415974 + G 74 -7.2 -3.98256 | overlap 415959 GCAATCTAGCTTAAG TTTTGC AGT GCAAAA TCTTTTTGATAAAAA CJJ81176_0471 413993 - 416107 + | TonB-dependent receptor, putative, degenerate CJJ81176_0472 416190 - 416786 + | NUDIX domain-containing protein TERM 468 416782 - 416814 + T 75 -9.3 -3.19482 | opp_overlap 416779 416782 416793, overlap 416781 416783 GAAAATTAAAGATTA TTTAGGTTAAACCTT AAA AAGGTTCAACCTAGG ATTTTAATGATCTGA TERM 469 416783 - 416813 + T 81 -10.6 -2.51207 | opp_overlap 416779 416782 416793, overlap 416782 416781 AAAATTAAAGATTAT TTAGGTTAAACCTT AAA AAGGTTCAACCTAG GATTTTAATGATCTG CJJ81176_0473 417915 - 416818 - | methyl-accepting chemotaxis protein TERM 470 417260 - 417248 - G 76 -6.3 -4.57341 | AATTTTTCGGAAAAA CTCAT AAT ATGAG CATTAGAATCTATAG CJJ81176_0474 418140 - 417925 - | hypothetical protein TERM 471 418320 - 418302 - R 77 -7.5 -4.24002 | opp_overlap 418301 418297 418318 TTGGAAATTTTAAAA TTGAGGA ATAAA TCCTCAA AATTATTTAGAATTT TERM 472 418318 - 418337 + r 76 -3.7 -5.48303 | opp_overlap 418302, overlap 418301 418297 TGAGGAATAAATCCT CAAAATT ATTTAG AATTTTG TTTTTTTAGAGTTCT rpmB 418517 - 418323 - | 50S ribosomal protein L28 TERM 473 418428 - 418444 + g 72 -4.5 -4.90079 | TGTTCTGAGATTAGG TAAAAAG CGT CTTTTTG TTTTATTGTTAGCAT rpe 418657 - 419304 + | ribulose-phosphate 3-epimerase TERM 474 419758 - 419770 + G 73 -5.5 -4.53685 | overlap 419757 ACAGTATTTTTGTAG CGCAT AAT GTGCG TTTTGATTATAGTTT CJJ81176_0477 419301 - 420062 + | DNA polymerase III subunit epsilon thiC 420245 - 421537 + | thiamine biosynthesis protein ThiC CJJ81176_0479 422047 - 421529 - | hypothetical protein CJJ81176_0480 422564 - 422037 - | hypothetical protein TERM 475 422129 - 422081 - G 95 -12 -3.39449 | opp_overlap 422085 422086 422089 422094 422125, overlap 422086 GTTTACTAATACTAA CAAAACGATACCACCCATTATC TAAGC GATAATAGGTTGTATAGCTTTG ATCAAAGATGCTTTT TERM 476 422124 - 422086 - G 87 -8.3 -4.78753 | opp_overlap 422085 422086 422089 422094, overlap 422081 CTAATACTAACAAAA CGATACCACCCATTATC TAAGC GATAATAGGTTGTATAG CTTTGATCAAAGATG CJJ81176_0481 423520 - 422561 - | hypothetical protein TERM 477 422889 - 422913 + g 72 -8.7 -2.89822 | opp_overlap 422894, overlap 422884 422894 TTATTTAAGGCTTCA TTGAAGTTATC TAA GGTAACTTCAG TATCATCGTTGTTGT TERM 478 423384 - 423396 + g 77 -4.9 -5.30155 | TCTAATAAATTTTCG CTTTT ATC AAAAG TTTTTTCATTGCTAC CJJ81176_0482 424172 - 423522 - | hypothetical protein miaB 425436 - 424135 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 479 424288 - 424306 + gr 93 -7.6 -5.25154 | opp_overlap 424288 TCTTAATTCTTCAAA TAAAACTT TAA AAGTTTTA TTTTCTTGTTTTTTT TERM 480 424306 - 424288 - GR 72 -7.6 -3.57561 | opp_overlap 424288 TCTTAATTCTTCAAA TAAAACTT TAA AAGTTTTA TTTTCTTGTTTTTTT CJJ81176_0484 425675 - 425433 - | hypothetical protein TERM 481 425476 - 425488 + g 72 -7.7 -3.55447 | opp_overlap 425475 425464 TCATTATCATCAAGT CCGTA TTT TACGG TTCTATGATAAATGC TERM 482 426726 - 426706 - g 71 -2 -5.48063 | gap 1 ATTGAAGATAAAAAA GCTATTGTA AGTT TA-AATAGC GAACAAAAAAGCAAA nusA 425803 - 426891 + | transcription elongation factor NusA TERM 483 426915 - 426894 - T 86 -8.9 -4.4267 | opp_overlap 426894 GTTTAAAATTTAAAA TATTTGTGA ATTT TCACAAATA TTTTTTATAAAACCA TERM 484 426894 - 426915 + T 100 -8.9 -5.24129 | opp_overlap 426894 GTTTAAAATTTAAAA TATTTGTGA ATTT TCACAAATA TTTTTTATAAAACCA CJJ81176_0486 428094 - 426907 - | transporter, putative TERM 485 427841 - 427827 - G 76 -2.9 -5.57729 | AAATAAGACAAAAAA TAGAA ATTAA TTCTA TGCTAATCATACTGA CJJ81176_0487 428168 - 429214 + | hypothetical protein TERM 486 429880 - 429870 - g 70 -5.4 -4.67353 | TGAGTTAGGCAAAAA CATC AAA GATG AAATTTTGGTACGCC CJJ81176_0488 429214 - 430434 + | peptidase, putative TERM 487 430473 - 430496 + G 75 -7.5 -4.18018 | opp_overlap 430471 430473, overlap 430476 AAAAATTAAAAATTA GAAGTGCTA TTGATT TAGCGCTTC TTTTACCTAAAAAAA TERM 488 430637 - 430647 + G 72 -4 -5.06052 | TGTGAGGAATGGCAA GAAA ATA TTTC TTTTGTGTTTTTTCA TERM 489 432245 - 432221 - g 88 -5.8 -5.61824 | opp_overlap 432223, overlap 432223 CAAAAGGTAAAAAAA GATTTGGCAA AAAAA TTGCCAAATT AATGTCCACCATACT recG 430424 - 432247 + | ATP-dependent DNA helicase RecG TERM 490 432243 - 432223 - T 85 -8.4 -4.41528 | opp_overlap 432223, overlap 432221 AAAGGTAAAAAAAGA TTTGGCAA AAAAA TTGCCAAA TTAATGTCCACCATA TERM 491 432223 - 432243 + T 73 -8.4 -3.2614 | opp_overlap 432223 432221 AAAGGTAAAAAAAGA TTTGGCAA AAAAA TTGCCAAA TTAATGTCCACCATA CJJ81176_0490 432627 - 432244 - | hypothetical protein TERM 492 432981 - 433011 + G 82 -8.6 -3.89346 | opp_overlap 432981 AGGAAGATGGAGAAA TTTTGGAAATTGAT TTT ATTAATTTTCAAAA TTTATGCAGTGAAAA CJJ81176_0491 432713 - 433318 + | putative transcriptional regulator CJJ81176_0492 433335 - 434036 + | His/Glu/Gln/Arg/opine ABC transporter permease CJJ81176_0493 434029 - 434685 + | His/Glu/Gln/Arg/opine ABC transporter permease CJJ81176_0494 434687 - 435424 + | amino acid ABC transporter, ATP-binding protein TERM 493 435581 - 435565 - f 70 -8.7 -2.62616 | opp_overlap 435556 435577 435580 TCAGTTGGTAGAGCA GCTGCCT TGT AAGCAGC AGGTCGGGGGTTCAA TERM 494 435978 - 435962 - f 82 -10.9 -2.65815 | opp_overlap 435953 CTCAGAGGTAGAGCA CTCCCTT GGT AAGGGAG AGGTCGCGGGTTCAA TERM 495 436872 - 436852 - g 77 -8.3 -3.78962 | overlap 436855 TTAAAGATACTCAAA CAACAACTG TAA CAGGTGTTG AAATGTTCAGAAAAG tuf 436080 - 437279 + | elongation factor Tu TERM 496 437287 - 437269 - f 70 -6.2 -4.07568 | opp_overlap 437269 437284 437285, overlap 437285 GTGTTGTTTCTAAAA TTATTAAA TAA TTTAATAA AGCCAAGTTAAAAGC TERM 497 437284 - 437312 + F 100 -9.7 -5.00884 | opp_overlap 437269 437285 437289, overlap 437285 TTATTAAATAATTTA ATAAAGCCAAGTT AAA AGCTTGGCTTTAA TTTTTTAAGGAAAAT TERM 498 437285 - 437311 + F 100 -13.2 -3.60048 | opp_overlap 437269 437285 437289, overlap 437284 TATTAAATAATTTAA TAAAGCCAAGTT AAA AGCTTGGCTTTA ATTTTTTAAGGAAAA TERM 499 437311 - 437285 - f 87 -11 -3.3458 | opp_overlap 437284 437285, overlap 437269 437289 TATTAAATAATTTAA TAAAGCCAAGTT AAA AGCTTGGCTTTA ATTTTTTAAGGAAAA TERM 500 437307 - 437289 - f 77 -7.4 -4.29977 | opp_overlap 437285 437284, overlap 437285 AAATAATTTAATAAA GCCAAGTT AAA AGCTTGGC TTTAATTTTTTAAGG rpmG 437332 - 437490 + | 50S ribosomal protein L33 TERM 501 437630 - 437606 - g 72 -4.5 -4.88295 | AAATAAATGGAAAAA TTAATAACTTA TTT TAAATTATCAA AAGCCGAATTAAGGA secE 437597 - 437776 + | preprotein translocase subunit SecE TERM 502 438181 - 438169 - g 72 -6.3 -4.24123 | TGAAGAAGGGGAAAA TGTGA GAA TCACA GAAGGGCCATTTGCA TERM 503 438290 - 438314 + G 75 -7.3 -4.18042 | ACTCCAGTGGAGATC TTATATTCTCA AGT TGAGAAAATAA TTTAATTTATATCAA nusG 437786 - 438319 + | transcription antitermination protein NusG rplK 438345 - 438770 + | 50S ribosomal protein L11 TERM 504 438794 - 438772 - f 70 -8.5 -2.56743 | overlap 438771 AAATCGTAGATTAAT CCTTTCACC GCCAA GGTAAAAGG CGGTAGCACTTTAAA rplA 438825 - 439526 + | 50S ribosomal protein L1 TERM 505 439527 - 439546 + F 95 -7.9 -5.09259 | opp_overlap 439527 CTTGATATGAAATAA GAGTTGC TTTTTT GCAACTC TTTTGTTTTAAAATA TERM 506 439546 - 439527 - f 80 -7.9 -4.04806 | opp_overlap 439527 CTTGATATGAAATAA GAGTTGC TTTTTT GCAACTC TTTTGTTTTAAAATA TERM 507 439560 - 439598 + F 82 -7.8 -4.27584 | opp_overlap 439560, overlap 439564 TCTTTTGTTTTAAAA TAAACATTTGAAAAAATT TTT GATTTTTTGAGATGTTTA TTTTAGATTGAAGAT rplJ 439678 - 440157 + | 50S ribosomal protein L10 TERM 508 440532 - 440517 - g 72 -4 -5.17576 | GAGGAAGCTAAAAAA CAACTT GAAG AAGCTG GTGCTAAAGTAGAAC rplL 440178 - 440555 + | 50S ribosomal protein L7/L12 TERM 509 440578 - 440601 + F 100 -10.4 -6.20267 | opp_overlap 440578 440581 CTTTAAAGTTTAGAA GAAGATTTGC CAAG GCAAGTCTTC TTTTTTTATTTTTAC TERM 510 440601 - 440578 - f 72 -8.2 -3.39668 | opp_overlap 440578, overlap 440581 CTTTAAAGTTTAGAA GAAGATTTGC CAAG GCAAGTCTTC TTTTTTTATTTTTAC TERM 511 443290 - 443278 - g 72 -6.3 -4.23379 | opp_overlap 443278, overlap 443275 AATGTAAAAGAAGAA GATGT TGC ACATC TTGATGAGAGCGGTA TERM 512 443813 - 443799 - g 79 -5.8 -5.1101 | opp_overlap 443787, overlap 443787 CGATGATTTAAAAAA TCATTT CCA AAATGA GAAGAAAAAATTAAA rpoB 440665 - 444801 + | DNA-directed RNA polymerase subunit beta TERM 513 445996 - 445974 - g 71 -2 -5.47218 | GTTTACCTAAAAAAA TGGCTTTA GAGCTCT TTAAGCCA CATCTTTTAGCTAAG TERM 514 446035 - 446024 - g 72 -4.4 -5.08088 | AAGCTTGAAGAAAAA GGTT ATGC AACC ACAGTAAAACAAGCT TERM 515 446466 - 446481 + G 74 -7.6 -3.77831 | ATGAAGTAATGATGG CACTTG AAAG CAAGTG TTTGGATATTCATGC TERM 516 447409 - 447399 - g 75 -4 -5.1971 | AGGAAAAAGCAAAAA TTCT TGG AGAA AGCGGTATAAAAAGT TERM 517 448523 - 448499 - g 70 -5.7 -4.28361 | GTAATCGCAGGAAAA GGTGATAAGGC TGT GCGTTATCAGC TTGAACCAAAAACCG rpoC 444794 - 449347 + | DNA-directed RNA polymerase, beta' subunit TERM 518 449358 - 449377 + F 93 -10.8 -4.45765 | opp_overlap 449345 449352 AATAAAACTCTATTT TATAGCCC TTCT GGGCTATA TTTCTTCATTTTCAA TERM 519 449528 - 449509 - g 70 -3.6 -5.10077 | overlap 449511 AAAGAGCGCAAAAAA GTTTTAGA AAAA TCTAAATC TCCAGCGCTTAAAAA rpsL 449467 - 449853 + | 30S ribosomal protein S12 rpsG 449923 - 450393 + | 30S ribosomal protein S7 fusA 450406 - 452481 + | elongation factor G TERM 520 452489 - 452504 + F 93 -10.4 -4.10164 | ACGGTTAAATTTTTA GCGGGA TTTT TCCCGC TTTCTGTCCTCGTAG CJJ81176_0515 452604 - 452753 + | hypothetical protein TERM 521 453290 - 453276 - g 88 -8.6 -4.43392 | overlap 453273 TGAAAATGAAAATAA CAAAGC TTT GCTTTG TACATACACATCAAA CJJ81176_0516 452759 - 453460 + | hypothetical protein TERM 522 453607 - 453595 - g 72 -6.3 -4.21402 | ATTTAAAATTAGAAA GCAAA GAA TTTGC TGAAAAATACTTGAG CJJ81176_0517 453450 - 453824 + | hypothetical protein TERM 523 454206 - 454195 - g 70 -4.4 -5.00884 | ACTTTTGGTAAAAAA GGAT AGTG ATCC TAGAAATTTAGAGCT CJJ81176_0518 453836 - 455074 + | putative lipoprotein trpC 455071 - 455847 + | indole-3-glycerol phosphate synthase TERM 524 456298 - 456316 + G 74 -6.1 -4.4267 | GGTACTAATATCGAG CAAGTTT ATCAA AAACTTG TTTTGGCTTTTAAAA CJJ81176_0520 455857 - 456342 + | Hit family protein TERM 525 456900 - 456890 - g 70 -5.4 -4.68424 | opp_overlap 456892 CAACCTACGCAAAAA GCTT TTG AAGC AGAACTTTTTCACAA TERM 526 456939 - 456919 - g 75 -9.9 -2.52742 | opp_overlap 456919, overlap 456918 456916 456934 ACTTTTTCACAATAT GCAAAATTT AGA AAATTTTGC TTTCATAGAAAGCGA TERM 527 456919 - 456939 + G 86 -9.9 -3.72576 | opp_overlap 456919 456918 456916 456934 ACTTTTTCACAATAT GCAAAATTT AGA AAATTTTGC TTTCATAGAAAGCGA TERM 528 456956 - 456934 - g 83 -7.8 -4.54477 | opp_overlap 456919, overlap 456919 456918 456916 456951 GCAAAATTTAGAAAA TTTTGCTTTC ATA GAAAGCGAAA GTCGCAAAATAGGGG TERM 529 456961 - 456951 - g 71 -6.8 -4.03234 | overlap 456934 TTGCTTTCATAGAAA GCGA AAG TCGC AAAATAGGGGATATC ybbB 456332 - 457336 + | tRNA 2-selenouridine synthase CJJ81176_0522 457825 - 457709 - | hypothetical protein CJJ81176_0523 457960 - 458142 + | hypothetical protein CJJ81176_0524 458144 - 458299 + | putative periplasmic protein TERM 530 458630 - 458618 - g 77 -4.9 -5.22104 | TAAAAAACAATAAAA TCTTT ATC AAAGA TGCTAATATGATTAT CJJ81176_0525 458296 - 458739 + | putative periplasmic protein CJJ81176_0526 458769 - 458885 + | putative periplasmic protein TERM 531 459576 - 459564 - g 71 -4.9 -4.77165 | opp_overlap 459564 459568, overlap 459568 CTGCTTATAATAAAA TCATT ATC AATGA TACTTTATTTGGTGT CJJ81176_0527 458930 - 459799 + | putative periplasmic protein CJJ81176_0528 460185 - 460313 + | hypothetical protein TERM 532 460341 - 460315 - f 77 -5.2 -4.91778 | opp_overlap 460316 460318 460336 460339, overlap 460316 460318 460331 460333 460336 460339 CAAAGATAAAATAAA TCATTCCTATCT TAA AGATAGGAATCT TTTGCTTGTATTTTT TERM 533 460316 - 460340 + F 90 -8.7 -4.6008 | opp_overlap 460315 460316 460318 460331 460333 460336 460339, overlap 460318 460336 460339 AAAGATAAAATAAAT CATTCCTATCT TAA AGATAGGAATC TTTTGCTTGTATTTT TERM 534 460340 - 460316 - f 77 -8.7 -3.52627 | opp_overlap 460316 460318 460336 460339, overlap 460315 460318 460331 460333 460336 460339 AAAGATAAAATAAAT CATTCCTATCT TAA AGATAGGAATC TTTTGCTTGTATTTT TERM 535 460318 - 460338 + F 95 -11.3 -3.87807 | opp_overlap 460316 460315 460318 460331 460333 460336, overlap 460316 460336 AGATAAAATAAATCA TTCCTATCT TAA AGATAGGAA TCTTTTGCTTGTATT TERM 536 460338 - 460318 - f 87 -11.3 -3.29782 | opp_overlap 460318 460316 460336, overlap 460316 460315 460331 460333 460336 AGATAAAATAAATCA TTCCTATCT TAA AGATAGGAA TCTTTTGCTTGTATT TERM 537 460380 - 460333 - f 87 -11 -3.38046 | opp_overlap 460318 460316 460336 460339 460378, overlap 460318 460316 460315 460331 460336 460339 460373 TTCCTATCTTAAAGA TAGGAATCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGATTCTTA AATCTTAATCTTACA TERM 538 460336 - 460377 + F 100 -12.7 -3.21464 | opp_overlap 460318 460316 460315 460336 460333 460331 460339 460373, overlap 460318 460316 460339 CTATCTTAAAGATAG GAATCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGATTC TTAAATCTTAATCTT TERM 539 460377 - 460336 - f 95 -12.7 -2.55297 | opp_overlap 460318 460316 460336 460339, overlap 460318 460316 460315 460333 460331 460339 460373 CTATCTTAAAGATAG GAATCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGATTC TTAAATCTTAATCTT TERM 540 460339 - 460374 + F 79 -8.6 -3.73872 | opp_overlap 460316 460315 460339 460336 460333 460331 460373, overlap 460316 460336 TCTTAAAGATAGGAA TCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGA TTCTTAAATCTTAAT TERM 541 460374 - 460339 - f 75 -8.6 -3.42257 | opp_overlap 460316 460336 460339, overlap 460316 460315 460336 460333 460331 460373 TCTTAAAGATAGGAA TCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGA TTCTTAAATCTTAAT CJJ81176_0529 460410 - 462071 + | putative periplasmic protein TERM 542 462078 - 462102 + F 91 -12.3 -3.40498 | opp_overlap 462078 462077, overlap 462076 462085 TCAAGATGATTAAAC TCCAAAAGGTT AAA AGCCTTTTGGA TCTTGTTAAAAATTA TERM 543 462102 - 462078 - f 79 -10.1 -2.90307 | opp_overlap 462076 462078 462085, overlap 462077 TCAAGATGATTAAAC TCCAAAAGGTT AAA AGCCTTTTGGA TCTTGTTAAAAATTA TERM 544 462145 - 462133 - f 73 -3.5 -5.28281 | overlap 462139 ATAAAACAAACAAAA TTTAA AGA TTAAA AATCAAACAAACACT TERM 545 462643 - 462633 - g 75 -4 -5.33785 | AACGATTACAAAAAA GAAA GTA TTTC AGTTCAAGACTTACA TERM 546 462764 - 462774 + G 74 -6.8 -4.20531 | opp_overlap 462763 462764 AATTCAAATCAATAT CACC TTA GGTG TTTTAGGTAAATATG CJJ81176_0530 462333 - 463988 + | putative outer-membrane protein TERM 547 464016 - 464059 + T 79 -10 -2.90075 | gap 1, opp_overlap 464027 464032, overlap 463989 463985 464023 AGTTTTTCTTGCTAA G-GGTGAATTTATAGAATTTA AAA TAAATTCCATAAATTCATCAC TATCATTAGGGCAAC hemH 464921 - 463992 - | ferrochelatase TERM 548 464687 - 464701 + g 77 -8.6 -3.68886 | opp_overlap 464687 464683, overlap 464692 CTTGTTTTAAATTAA GCTTGT TAC ACAAGC TTTGAGTAAGTTCGT TERM 549 464701 - 464687 - G 76 -8.6 -3.51232 | opp_overlap 464687 464692, overlap 464683 CTTGTTTTAAATTAA GCTTGT TAC ACAAGC TTTGAGTAAGTTCGT CJJ81176_0532 465784 - 464918 - | Gfo/Idh/MocA family oxidoreductase CJJ81176_0533 466862 - 465789 - | DegT/DnrJ/EryC1/StrS aminotransferase family protein TERM 550 466746 - 466729 - G 72 -4.1 -5.1615 | TTAACACCTAAAAAA TGAGCTA AATT TTGCTCA AATTCGTTAAGCTTT TERM 551 469025 - 469043 + G 80 -9 -3.86897 | TATTGAAGCTGTGGT TTCTAAAG CGG CTTTAGAA TTTGTAAAAAATCAA alaS 466977 - 469505 + | alanyl-tRNA synthetase TERM 552 469539 - 469581 + G 100 -9.4 -4.51174 | opp_overlap 469538 469543 GTTCCATTTCAAGAG CTAACTTGCTTAAAACCG CAAAGAT TGATTTTAGGCAAGTTAG TTTTGATTATGATGA CJJ81176_0535 469505 - 470056 + | Maf-like protein TERM 553 470404 - 470390 - g 74 -8.6 -3.23708 | opp_overlap 470389, overlap 470388 GCGGTGGAAAAACCA TGGAAG GAG CTTCCA CTCTTACCCAGCAAT pbpA 470053 - 471984 + | penicillin-binding protein 1A TERM 554 471972 - 472017 + T 81 -5.2 -5.22794 | gap 2, opp_overlap 471979 471987 471990, overlap 471974 471979 471987 ATTTAATGAAAGCGA GATTA-T-ATTTTGAAAGTAGA AAGA TCTACTTTCAAAATGATTAAGC TTTTTTGATGATTAT TERM 555 471979 - 472008 + T 100 -13.9 -2.80411 | opp_overlap 471979 471987 471990, overlap 471974 471972 471987 GAAAGCGAGATTATA TTTTGAAAGTAGA AAGA TCTACTTTCAAAA TGATTAAGCTTTTTT TERM 556 472008 - 471979 - T 100 -13.9 -2.88236 | opp_overlap 471979 471974 471972 471987, overlap 471987 471990 GAAAGCGAGATTATA TTTTGAAAGTAGA AAGA TCTACTTTCAAAA TGATTAAGCTTTTTT clpB 474585 - 472012 - | ATP-dependent chaperone protein ClpB TERM 557 474612 - 474647 + r 100 -13.6 -3.37522 | opp_overlap 474612 TATTTAGTTTATATA CTTGACATTATATAAC TTTA GTCATATAATGTCAAG TTAATTGAGTAAAAT TERM 558 474647 - 474612 - R 100 -15.8 -2.89881 | opp_overlap 474612 TATTTAGTTTATATA CTTGACATTATATAAC TTTA GTCATATAATGTCAAG TTAATTGAGTAAAAT CJJ81176_0538 474987 - 474697 - | hypothetical protein ctpA 475105 - 476439 + | carboxyl-terminal protease purC 476441 - 477151 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 559 477306 - 477290 - g 72 -5.2 -4.76478 | overlap 477284 CAAAACAAATCAAAA TTTCTC TTGAT GAGAAA GATGAAAAATTAGCC purS 477160 - 477405 + | phosphoribosylformylglycinamidine synthase, purS protein purQ 477407 - 478054 + | phosphoribosylformylglycinamidine synthase subunit I CJJ81176_0543 478138 - 479247 + | hypothetical protein TERM 560 479847 - 479817 - g 81 -8.5 -4.21194 | GCGGAGTACTTAAAA TCATTTGTATGGA TTTAG TCGATACAAATGA TGAAAAATGGCTTGA CJJ81176_0544 479228 - 479920 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative TERM 561 480100 - 480128 + G 81 -6.1 -5.03747 | opp_overlap 480087 AATAAAGGTTTATCT CCTTTACTTAAAA GCT TTATAAGTACAGG TTTTTTAGGAGCTTT CJJ81176_0545 479914 - 480282 + | crcB protein TERM 562 480781 - 480765 - g 79 -5.2 -5.26875 | opp_overlap 480765 480774 GTTTTAAGTAAAAAA GCTTTA GATGA TAAAGC TTATCTTTGGAGTTC TERM 563 481158 - 481168 + G 70 -4 -4.91852 | opp_overlap 481158 AGTGAAGGAAAATTA GAAT ACA ATTC TTTATTTTTCATACC htpG 480354 - 482180 + | heat shock protein 90 TERM 564 482247 - 482224 - g 77 -8.2 -3.79505 | opp_overlap 482221 AAAGCAAGATTTAAA CGCATATCAA ATCT TTGATGTGCG TACTCCTTTAGAATG CJJ81176_0547 482177 - 482494 + | hypothetical protein TERM 565 482688 - 482676 - g 72 -6.3 -4.19879 | AGAAAATGTCCAAAA TGCTA ATT TAGCA TTAAAAATTTCTGAT CJJ81176_0548 482494 - 482928 + | hypothetical protein CJJ81176_0549 482932 - 484701 + | Na/Pi-cotransporter, putative CJJ81176_0550 486506 - 484698 - | penicillin-binding protein TERM 566 485029 - 485056 + g 88 -3.4 -6.12458 | overlap 485030 ATAAGAACATTTTGC ATCGTTTTAGCG GCTT CGCTAGAAAGAA TTTTTTCTTTTTTTA TERM 567 485030 - 485055 + g 74 -6.9 -4.21984 | overlap 485029 TAAGAACATTTTGCA TCGTTTTAGCG GCTT CGCTAGAAAGA ATTTTTTCTTTTTTT TERM 568 486038 - 486054 + g 86 -9.5 -3.88583 | overlap 486041 TTAATCCTCTTGTTT CAACTCT TCC AGAGTTG TTTGTAAAAGCTTTG fliE 486809 - 486513 - | flagellar hook-basal body protein FliE flgC 487310 - 486816 - | flagellar basal body rod protein FlgC flgB 487751 - 487320 - | flagellar basal body rod protein FlgB CJJ81176_0554 488919 - 487831 - | hypothetical protein TERM 569 487970 - 487950 - GH 86 -6.9 -4.98531 | TCTTTAAAGGAAAAA TAGCTGC ACGAATA GCAGCTA AAGAAACATTACAAA TERM 570 488372 - 488355 - GH 85 -5.6 -5.40072 | TTTCTGGTAAAAAAA CTCCTT CATCAT AAGGAG CTTGAGCTTGAAATT TERM 571 489194 - 489182 - gH 77 -4.9 -5.21709 | opp_overlap 489182 GCTGATATTAAAAAA CTTTT ATT AAAAG ATTATGATTTAAATA TERM 572 489959 - 489941 - gH 77 -7.6 -4.13304 | opp_overlap 489929, overlap 489929 AAAGCATTTGTAAAA TTAAATCA AAA TGATTTAA ATATAGAAAATGCTA CJJ81176_0555 488786 - 491317 + | hypothetical protein TERM 573 491360 - 491321 - fH 77 -6 -4.88407 | opp_overlap 491314 491322 491323 491329, overlap 491314 491323 TTACTTAATTAAAAA TATTTAAAGTTTGTTTGA AAAC TAAAACAAACTTTAAACT TACTCTTGCATTTTT TERM 574 491323 - 491358 + FH 82 -10.8 -2.63637 | opp_overlap 491314 491321 491323, overlap 491314 491322 491329 ACTTAATTAAAAATA TTTAAAGTTTGTTTGA AAAC TAAAACAAACTTTAAA CTTACTCTTGCATTT TERM 575 491358 - 491323 - fH 93 -10.8 -4.06004 | opp_overlap 491314 491323 491322 491329, overlap 491314 491321 ACTTAATTAAAAATA TTTAAAGTTTGTTTGA AAAC TAAAACAAACTTTAAA CTTACTCTTGCATTT icd 491335 - 493638 + | isocitrate dehydrogenase, NADP-dependent TERM 576 493932 - 493918 - g 73 -8.6 -3.05844 | opp_overlap 493918 493917 TGCTTCAGTTGAATA CAAGCA TTA TGCTTG ATTGTGCTAAAAAAA TERM 577 493918 - 493932 + G 70 -8.6 -2.64099 | opp_overlap 493918, overlap 493917 TGCTTCAGTTGAATA CAAGCA TTA TGCTTG ATTGTGCTAAAAAAA mdh 493635 - 494537 + | malate dehydrogenase sucC 494538 - 495701 + | succinyl-CoA synthase, beta subunit sucD 495711 - 496580 + | succinyl-CoA synthase, alpha subunit TERM 578 496582 - 496570 - f 70 -3.5 -5.25805 | AAGAAATTCAAAAAA TATTA GGT TAATA AAGGAAAAAACATGA TERM 579 496677 - 496687 + G 81 -8.2 -4.2349 | TTGTGTTAGCTATTG CCCC GCT GGGG TTTTAGCTATGCGCG oorD 496594 - 496905 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorD oorA 496914 - 498038 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorA oorB 498040 - 498885 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorB oorC 498882 - 499439 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorC TERM 580 499439 - 499465 + F 83 -11 -2.64938 | opp_overlap 499440 499444, overlap 499444 AAAACCACATTCATA ATAAATTCCGCA TCA TGCGGAATTTAA CTTCTAAAATTTTAC TERM 581 499464 - 499440 - f 100 -14.5 -3.41414 | opp_overlap 499439 499444, overlap 499444 AAACCACATTCATAA TAAATTCCGCA TCA TGCGGAATTTA ACTTCTAAAATTTTA TERM 582 499444 - 499460 + F 89 -10.9 -3.80893 | opp_overlap 499444 499440, overlap 499439 CACATTCATAATAAA TTCCGCA TCA TGCGGAA TTTAACTTCTAAAAT TERM 583 499460 - 499444 - f 93 -10.9 -4.34488 | opp_overlap 499439 499444, overlap 499440 CACATTCATAATAAA TTCCGCA TCA TGCGGAA TTTAACTTCTAAAAT CJJ81176_0564 499578 - 499841 + | hypothetical protein CJJ81176_0565 499844 - 500380 + | hypothetical protein TERM 584 501178 - 501165 - g 79 -5.3 -5.29445 | opp_overlap 501165 501163 TTTGAAGAACAAAAA GCTTT AGAA AAAGC TATTTTAGAAGCTAA CJJ81176_0566 500394 - 501287 + | polyprenyl synthetase family protein TERM 585 501557 - 501578 + G 90 -7.3 -5.36441 | opp_overlap 501561 GCTGATATTTTTGAA GATAGTGGA GCAA TCCACCATC TTTTTTCTGTAGCAA hemA 501287 - 502585 + | glutamyl-tRNA reductase proS 502569 - 504278 + | prolyl-tRNA synthetase TERM 586 504372 - 504389 + G 82 -7.1 -4.75404 | GTAATTTTTTATTTT TCATACT TTTG AGTATGA TTTTTGGTGCGGTTT CJJ81176_0569 504275 - 504664 + | hypothetical protein hemC 504661 - 505584 + | porphobilinogen deaminase TERM 587 506492 - 506482 - g 72 -2.6 -5.42265 | TGAAAGTAGAAAAAA TTTA TGC TAAA AAAGATGCGATCTAT CJJ81176_0571 505581 - 507383 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative flaG 507540 - 507905 + | flagellar protein FlaG TERM 588 508066 - 508052 - g 72 -2.9 -5.39681 | ACAACCAAACAAAAA GATTT AACAG AAATC AAAACTAAATTACTA fliD 507908 - 509836 + | flagellar capping protein fliS 509848 - 510234 + | flagellar protein FliS TERM 589 510468 - 510440 - g 76 -2.6 -5.64328 | gap 1, overlap 510441 510442 AAGAAAAAAACAAAA GC-TGTTGAAATT CAAA AATTTCAAAAAGC GTTGACATATTTTAA CJJ81176_0575 510299 - 510490 + | hypothetical protein efp 510922 - 511491 + | elongation factor P CJJ81176_0577 511650 - 512342 + | hypothetical protein TERM 590 512861 - 512875 + G 78 -4.2 -5.38054 | TACCGCAAATTTTGG CTACAC TTG GGGTAG TTTTTGTTTCTACAG CJJ81176_0578 512329 - 513282 + | hypothetical protein TERM 591 513922 - 513941 + G 71 -7.2 -3.73042 | GCTTTAGAGCCTTGT GGAGATGA GTTT TTATCTCC TGTTTTGATGGAAGC CJJ81176_0579 513292 - 514296 + | hypothetical protein TERM 592 515495 - 515506 + G 74 -2.2 -5.64304 | CAAGCAGTGGATTAA GCGA GGCA TTGC TTTTTTCTTGTATTG CJJ81176_0580 514411 - 515697 + | hypothetical protein TERM 593 516026 - 516009 - g 72 -8.5 -3.32159 | opp_overlap 516008 516009 516023 TTAGATTAAATTTAA TTGGCAA AGAA TTGCCAA ATTTTAAAAGTATGG TERM 594 516009 - 516026 + G 70 -8.5 -3.07487 | opp_overlap 516009, overlap 516008 516023 TTAGATTAAATTTAA TTGGCAA AGAA TTGCCAA ATTTTAAAAGTATGG CJJ81176_0581 515708 - 516505 + | hypothetical protein CJJ81176_0582 517587 - 516502 - | hypothetical protein proA 518816 - 517584 - | gamma-glutamyl phosphate reductase CJJ81176_0584 518887 - 519822 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 595 519819 - 519848 + F 95 -9.5 -4.6038 | opp_overlap 519825, overlap 519825 519838 AATTCTTTCTGTGCT TTAAAATTTAGCC TTTG GGCTAAATTTTTA TTTTAGTTTAATCTA TERM 596 519825 - 519842 + F 100 -8.5 -5.56372 | opp_overlap 519825, overlap 519819 519838 TTCTGTGCTTTAAAA TTTAGCC TTTG GGCTAAA TTTTTATTTTAGTTT TERM 597 519842 - 519825 - f 83 -8.5 -4.07568 | opp_overlap 519819 519825 519838 TTCTGTGCTTTAAAA TTTAGCC TTTG GGCTAAA TTTTTATTTTAGTTT TERM 598 520068 - 520084 + G 70 -3.7 -5.09221 | TGCCGTGCCAAATGT TATAAGC ATG GCTTTTA TTTCTTTTTATTATA TERM 599 520624 - 520634 + G 70 -5.4 -4.56978 | TTAGGTGGTATTTTT GGAA TTT TTCC TTTCTTGTTTCAAAA CJJ81176_0585 520003 - 521331 + | MATE efflux family protein, authentic frameshift TERM 600 521317 - 521341 + T 100 -8.7 -5.28315 | opp_overlap 521317 AAAAGAATTTTTAAA GATCTATCTTT ATA GGAGATAGATC TTTTTTAAATTTTAT TERM 601 521341 - 521317 - T 72 -7.3 -3.65722 | opp_overlap 521317 AAAAGAATTTTTAAA GATCTATCT TTATAGG AGATAGATC TTTTTTAAATTTTAT CJJ81176_0586 522308 - 521379 - | hypothetical protein TERM 602 522960 - 522946 - g 76 -2.9 -5.54079 | opp_overlap 522946 TTAAAAAGCAAAAAA CTTTA GAAAA TAAAG GTATTATAGGGCTTG dnaB 522462 - 523838 + | replicative DNA helicase CJJ81176_0588 523943 - 524503 + | hypothetical protein CJJ81176_0589 524494 - 524700 + | hypothetical protein CJJ81176_0590 524842 - 525519 + | hypothetical protein CJJ81176_0591 525591 - 526457 + | hypothetical protein TERM 603 526448 - 526434 - f 73 -3.6 -5.43487 | AAATTATACAAAAAA CTTAAT CAA ACTAAG GAGAACTGATGCTAG CJJ81176_0592 526457 - 527239 + | hypothetical protein CJJ81176_0593 527243 - 527707 + | hypothetical protein TERM 604 527752 - 527780 + G 74 -8.3 -3.55071 | opp_overlap 527752 TCTTAGCCTTGCAAA TGCGTTTAAAGGA TTT TTATTTAAACGCA TTTCAAGCCCTATGC CJJ81176_0594 527714 - 528019 + | hypothetical protein CJJ81176_0595 528028 - 528237 + | putative ATP TERM 605 528815 - 528831 + GF 71 -2.3 -5.40072 | opp_overlap 528815 AATGTCCAAGGCAAA TCTTTTA TAC TTAAAGA TTTTTTTACCCAAAA CJJ81176_0596 528194 - 529096 + | hypothetical protein CJJ81176_0597 529241 - 529963 + | transcriptional regulator, putative TERM 606 530010 - 530022 + F 75 -9.1 -3.28712 | GGGGAGATTTGAACT CCCGA CCT TCGGG TTATGAGCCCGACGA TERM 607 531159 - 531149 - g 72 -4 -5.10767 | CATTCAATACAAAAA CTAT GGT ATAG GAGCACAGATTTTAA ribB 530214 - 531281 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein CJJ81176_0601 531293 - 531736 + | GatB/Yqey family protein TERM 608 532346 - 532329 - g 71 -7.1 -3.76839 | TAAGGGTAACTCAAA GCAAATT AAAA AATTTGC AGAGCTTTTAAAAGA ilvB 531754 - 533454 + | acetolactate synthase 3 catalytic subunit ilvH 533451 - 533915 + | acetolactate synthase 3 regulatory subunit TERM 609 534121 - 534100 - g 78 -6.7 -4.52347 | TAAAGAATATGAAAA TTTAGTACC TAAA GATACTAAA GCTTTAATTACTCAA lpxD 533912 - 534877 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 610 534884 - 534925 + T 79 -8.2 -3.97406 | overlap 534885 CAAGATTAACATCGC ATCGCCATAAGAGTAAAA GCGATA TTTTTCTTTTATGGCGAG TTTATAAAGTTTTAA TERM 611 534885 - 534924 + T 90 -11.7 -2.97721 | overlap 534884 AAGATTAACATCGCA TCGCCATAAGAGTAAAA GCGATA TTTTTCTTTTATGGCGA GTTTATAAAGTTTTA queA 535894 - 534866 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 612 535530 - 535496 - G 70 -3.6 -5.03715 | overlap 535498 ATCATTTTGAAAAAA TTGAACCTTTCGAAGA CCA TCATCTAAAAGTTCTA CAACGCGCGCTTTTA tatC 536624 - 535887 - | Sec-independent protein translocase TatC tatB 537032 - 536625 - | sec-independent translocase TERM 613 536732 - 536752 + g 73 -5.5 -4.54449 | TATCATCTCTGCTAT CAAAGGT TAAATCT ACCTTTG TTTTATCTAAAATAT CJJ81176_0608 538158 - 537091 - | coproporphyrinogen III oxidase TERM 614 537534 - 537555 + g 72 -4.5 -5.00616 | ATTTCATTAAATTAG GAGCATTTT TTTT GAAATGTTC TTTTTTGGCAAAGGC TERM 615 538677 - 538650 - g 100 -11.6 -4.42806 | opp_overlap 538648 TGAGTGTTAAACAAA TTTTTGAAATGA TTAA TCATTTCAAAAA AAATATTTATGTTAA nidH 538259 - 538729 + | dinucleoside polyphosphate hydrolase TERM 616 539325 - 539311 - g 71 -5.8 -4.45577 | opp_overlap 539297 539311, overlap 539297 AGAAATTGGATAAAA TTTCTT ATG AAGAAA TGCTTGAACTTGCAA TERM 617 539401 - 539391 - g 72 -2.6 -5.41143 | opp_overlap 539391 GAGCTTGCAAAAAAA TTAA ATG TTAA CTTAGTAACTAGAAG CJJ81176_0610 538731 - 539933 + | aspartate kinase CJJ81176_0611 539934 - 540470 + | hypothetical protein CJJ81176_0612 540476 - 541075 + | DNA polymerase III subunit delta' TERM 618 541391 - 541408 + G 77 -5.7 -5.00616 | ACTTAAAAATTTGGC TCTTTTT TTGC AAAAAGA TTTTTTAAAACCAAA folP 541077 - 542219 + | dihydropteroate synthase TERM 619 543467 - 543496 + G 72 -4.5 -4.99043 | gap 1, opp_overlap 543473, overlap 543471 543495 TCAAAATATAGACTG TGAA-GATAGACTT GTA AATTCTATCATTCA TTTTGTTTCTAAAAA ligA 542220 - 544163 + | NAD-dependent DNA ligase LigA TERM 620 545038 - 545020 - g 100 -9 -5.63236 | opp_overlap 545022, overlap 545035 ATTCAAAAAGAAAAA GATCTTTT TGA AAAAGATC TTAAAGATCTTAGAG TERM 621 545047 - 545035 - g 76 -6.3 -4.57073 | opp_overlap 545022, overlap 545020 GATCTTTTTGAAAAA GATCT TAA AGATC TTAGAGAAATTTTTA CJJ81176_0615 544201 - 545148 + | hypothetical protein tlyA 545145 - 545906 + | hemolysin A TERM 622 546097 - 546113 + GF 70 -3.8 -5.16472 | opp_overlap 546097 546090 TTTGAAAATATAAAA TCTTTA GATGG TAAAGA TTTTTTAAGCTTTTT CJJ81176_0617 545872 - 546726 + | bifunctional riboflavin kinase/FMN adenylyltransferase CJJ81176_0618 546716 - 547423 + | methyltransferase, putative CJJ81176_0619 547628 - 547413 - | putative lipoprotein CJJ81176_0620 548065 - 547625 - | hypothetical protein TERM 623 547828 - 547840 + g 90 -6.3 -5.62219 | opp_overlap 547828 TTAAAGTTTCTAATA TCTGA TTA TCAGA TTTTTTTGGTGTATT TERM 624 547881 - 547897 + g 74 -6.6 -4.31379 | TTACTCTCTTCATTT GTTGGT TTAAC ACCAAC TTTTAATGCATTAAT CJJ81176_0621 548755 - 548123 - | hypothetical protein CJJ81176_0622 549416 - 548766 - | DNA/RNA non-specific endonuclease TERM 625 548957 - 548977 + g 76 -7 -4.36903 | opp_overlap 548961 AAACCTCGATACTTT GAAATTTG AAAGC CAAATTTC TTTCTCTTTGCTCGA nth 550039 - 549413 - | endonuclease III TERM 626 550679 - 550662 - g 72 -4.1 -5.03314 | opp_overlap 550662 TCCAGGTTCAAAAAA CCAAGGT GGTG AGCTTGG TTGGTTTGATCAATC CJJ81176_0624 550120 - 550941 + | major antigenic peptide PEB4 fbaA 550941 - 552005 + | fructose-bisphosphate aldolase TERM 627 551997 - 552027 + F 86 -7 -5.08255 | opp_overlap 552002, overlap 552002 TTAAACTGTATAAAC AAAAACTAAGCATT TTA AAGGCTTAGTTTTA TTTTGTTTTAAAAAT TERM 628 552022 - 552002 - f 95 -6.9 -5.38054 | opp_overlap 551997 552002 CTGTATAAACAAAAA CTAAGCATT TTA AAGGCTTAG TTTTATTTTGTTTTA TERM 629 552002 - 552022 + F 95 -6.9 -5.40279 | opp_overlap 552002, overlap 551997 CTGTATAAACAAAAA CTAAGCATT TTA AAGGCTTAG TTTTATTTTGTTTTA CJJ81176_0626 552100 - 553542 + | hypothetical protein CJJ81176_0627 553539 - 554492 + | chemotaxis protein MotB, putative TERM 630 554672 - 554654 - g 73 -8.9 -3.19389 | overlap 554661 TAAGTTATGGAGGAA GCCAAAG TAATG CTTTGGC GGCATTAAGTATTTT TERM 631 555296 - 555317 + G 81 -10.3 -3.07013 | opp_overlap 555295 555296 TTTATATACATCAAG GTGGAATTT TAGG AAATTCCAC TATGTTAGAGAGATA TERM 632 555317 - 555296 - g 78 -10.3 -2.60797 | opp_overlap 555296, overlap 555295 TTTATATACATCAAG GTGGAATTT TAGG AAATTCCAC TATGTTAGAGAGATA CJJ81176_0628 554479 - 555354 + | hypothetical protein CJJ81176_0629 556689 - 555346 - | sodium-dependent transporter, putative TERM 633 555386 - 555372 - G 79 -5.8 -5.03994 | TTCCATAGATAAAAA TGATTA AAA TAATCA AAGGTACTATATATT TERM 634 556764 - 556741 - R 75 -9.8 -2.6369 | opp_overlap 556743 556746 556759, overlap 556740 556739 556743 556746 ATAACTTTAAAAACT TATAAGCTAT CCAT ATAGCTTATA TCGTAAGTATTTTTT CJJ81176_0630 557408 - 556740 - | MOSC domain-containing protein dsbD 559108 - 557405 - | thiol:disulfide interchange protein DsbD TERM 635 558498 - 558477 - G 83 -3.1 -5.82281 | opp_overlap 558483 AAAGAGAGAAAAAAA CTATATTTT TTTG AAAATTTAG CATTACTTTTTGCTA TERM 636 558835 - 558859 + g 72 -5.1 -4.77036 | opp_overlap 558836 558840, overlap 558836 CAAAGTGCTCTAGTA ATAAATTTGGC AAA GCTAAATTTAA TTTTTGATAATAAAC TERM 637 558836 - 558858 + g 76 -8.6 -3.4574 | opp_overlap 558836 558840, overlap 558835 AAAGTGCTCTAGTAA TAAATTTGGC AAA GCTAAATTTA ATTTTTGATAATAAA CJJ81176_0632 559203 - 559691 + | hypothetical protein TERM 638 559742 - 559729 - g 91 -5.3 -5.88471 | overlap 559741 GATGAGCAAAAAAAA CGTTT TGAA AAACG CCGAAGCGATCCGCT CJJ81176_0633 559672 - 560085 + | polyphosphate kinase 2 CJJ81176_0634 560094 - 561284 + | carboxypeptidase CJJ81176_0635 561363 - 562535 + | macrolide-specific efflux protein macA TERM 639 563761 - 563740 - g 80 -2.3 -5.81032 | overlap 563741 TAATGCTAAAAAAAA TCTTTTTCC TGAT GAAAAAAGT GAAAATATTTTAGGT CJJ81176_0636 562535 - 564460 + | macrolide-specific efflux protein macB CJJ81176_0637 564462 - 565832 + | outer membrane efflux protein CJJ81176_0638 567012 - 565834 - | hypothetical protein TERM 640 566470 - 566496 + g 71 -8.8 -2.73459 | overlap 566483 566487 TAACTCATAGCTTTG GTTTTTTGCATC TTT GATGCTAAAAGC ATTGGTATTTTGCTT TERM 641 566850 - 566862 + g 76 -2.7 -5.53991 | CTAATTTTTTTTCTA GATTT TTA AGATC TTTTTTTGATACATA CJJ81176_0639 568009 - 566999 - | hypothetical protein TERM 642 567860 - 567874 + g 91 -10 -4.10429 | overlap 567873 TTCTAATTTAATTTT GAAGCC ATT GGCTTC TTTTAAAAGATCATT algI 569386 - 568010 - | alginate O-acetyltransferase AlgI TERM 643 568573 - 568589 + g 70 -3.7 -5.02074 | TGATATGCCATCTAG CCCAAAA ATC TTTTAGG TTTTTTGCAAGATAA ftn 569932 - 569429 - | nonheme iron-containing ferritin TERM 644 570275 - 570260 - g 72 -2.6 -5.36364 | gap 1 TCAAAAATACAAAAA CTC-CTA TAG TAGAGAG CTTGGGAACAGGGGG TERM 645 570517 - 570503 - g 70 -5 -4.65933 | CATTGGCAAAAGAAA TTCCAC AAA ATGGAA AACTTATACCAAATC CJJ81176_0642 570112 - 571107 + | phosphate ABC transporter, periplasmic phosphate-binding protein, putative TERM 646 571163 - 571201 + G 100 -17.8 -4.41895 | overlap 571194 TTTTTTTATGTGCTT TTGTAAGCGTGATAGTAA GTT TTGCTATCATGCTTACAA TTTTAATTGAAGCTT TERM 647 571273 - 571283 + G 76 -6.8 -4.42386 | TCAAGTCAGTGGGCA GCTG ATG CAGC TTTTATGAATGCAGA CJJ81176_0643 571117 - 572031 + | phosphate ABC transporter, permease protein PstC, putative TERM 648 572050 - 572037 - g 73 -3.9 -5.19261 | AAATTTATGAAAAAA CTTTT TAAA AAAAG ACAAAAAGCTTCAAA TERM 649 572087 - 572058 - g 72 -2.9 -5.44837 | opp_overlap 572066, overlap 572059 572060 AAAAAAAGACAAAAA GCTTCAAAGTCTT TTAA AAGACTTTGTAAA ATGGGGCTTTATATT TERM 650 572426 - 572441 + G 71 -7.6 -3.41114 | opp_overlap 572412 572425 572424, overlap 572425 TGGGGACTCAAAATC TCCTGA AAAT TCAGGA ATTTTATCTTCAGTT TERM 651 572934 - 572960 + G 73 -8.8 -3.12395 | overlap 572933 TTTATCCCTGATGTA GCTAGTTCGATT TTT GATCCAACTAGC GTTTTACCTGCTCAA CJJ81176_0644 572028 - 573116 + | phosphate ABC transporter, permease protein PstA, putative TERM 652 573228 - 573240 + G 75 -4.8 -5.10077 | overlap 573224 TCGGTGCTTCAGGAT GTGG TAAAT CCAC TTTTTTGCGCTGTTT pstB 573113 - 573853 + | phosphate ABC transporter, ATP-binding protein CJJ81176_0646 573915 - 574526 + | hypothetical protein CJJ81176_0647 574496 - 575143 + | hypothetical protein CJJ81176_0648 575233 - 576549 + | MATE efflux family protein TERM 653 576851 - 576814 - g 78 -3 -5.51165 | overlap 576815 AAAATGTCAAAAAAA CTTATTTTAATAAAGA TAAAAT TCTTTGTCAAAATAAA GCAAAATTAGATTTA CJJ81176_0649 576525 - 577172 + | hypothetical protein CJJ81176_0650 577214 - 578734 + | hypothetical protein TERM 654 578793 - 578808 + G 83 -7.6 -4.57569 | opp_overlap 578793 578803 TTAGTTTATGAACTA GCTTTG AAAT CAAAGC TTTTTGGAGAAGTAA TERM 655 579076 - 579054 - g 72 -4.3 -5.07053 | AAGGAGTGTAAAAAA GAATTTTTT GATGA AAAAAATCC ACGCTTTTTATATCC TERM 656 579740 - 579763 + G 100 -9.8 -5.33026 | TGAGTTTAATTTGCG TCAAAAACTT GATA AAGTTTTTGA TTTTTATTTGGATTA hypF 578715 - 580901 + | [NiFe] hydrogenase maturation protein HypF hypB 580974 - 581717 + | hydrogenase accessory protein HypB hypC 581717 - 581998 + | hydrogenase assembly chaperone HypC/HupF TERM 657 582160 - 582171 + G 70 -5.8 -4.27117 | overlap 582157 ACTTTATCCATGGGC CAGG ATGT CCTG TTTGTGTTATGCCAA hypD 581982 - 583073 + | hydrogenase expression/formation protein HypD TERM 658 583794 - 583779 - g 74 -3.3 -5.4505 | overlap 583753 TCTTTGAAGAAAAAA TCATC GTTCAA GATGA GGTTTTAGGACTTTG hypE 583070 - 584044 + | hydrogenase expression/formation protein HypE TERM 659 584373 - 584342 - g 82 -7.4 -4.76963 | opp_overlap 584342 GTATAGAATATAAAA TCACACAAGGTG AGGACTTA CACCTTATGCGA CTTGTGATGGAGTGA hypA 584044 - 584388 + | hydrogenase nickel insertion protein HypA TERM 660 584387 - 584417 + T 95 -12.9 -2.93357 | opp_overlap 584391, overlap 584391 GACTTGTGATGGAGT GAAAGTAAAATCA ATAAA TGATTTTACTTTC TGCTTTCAAATGCTT TERM 661 584391 - 584413 + T 80 -7.9 -4.14056 | opp_overlap 584391, overlap 584387 TGTGATGGAGTGAAA GTAAAATCA ATAAA TGATTTTAC TTTCTGCTTTCAAAT TERM 662 584413 - 584391 - T 76 -7.9 -3.6682 | opp_overlap 584391 584387 TGTGATGGAGTGAAA GTAAAATCA ATAAA TGATTTTAC TTTCTGCTTTCAAAT CJJ81176_0657 585367 - 584630 - | prophage Lp2 protein 6 TERM 663 584790 - 584800 + g 75 -4 -5.2422 | overlap 584791 584793 AAATCATTAATAATT TCTT TAA AAGA TTTTTTAATGTAATT CJJ81176_0658 586398 - 585430 - | DNA polymerase III subunit delta TERM 664 585492 - 585517 + g 91 -11.3 -3.12936 | AAAATTCTTTTTTTA CGAGCTTAGAA TTGG TTTTAAGCTCG TATTCGCATTTAAGT CJJ81176_0659 588325 - 586391 - | RNB-like protein ilvC 588444 - 589466 + | ketol-acid reductoisomerase TERM 665 589543 - 589584 + G 72 -2.5 -5.47159 | gap 1, overlap 589546 589547 589548 TACTTTGTATAGCTT TAGCTTTGGGAATTTTAGTA AAA TATCAAAATTCCC-AAGATG TTTTTTCTGTTAAGC TERM 666 589547 - 589581 + G 73 -8.8 -3.20491 | overlap 589546 589543 589548 TTGTATAGCTTTAGC TTTGGGAATTTTAGTA AAA TATCAAAATTCCCAAG ATGTTTTTTCTGTTA TERM 667 589548 - 589580 + G 75 -10.1 -2.50668 | overlap 589547 589546 589543 TGTATAGCTTTAGCT TTGGGAATTTTAGTA AAA TATCAAAATTCCCAA GATGTTTTTTCTGTT CJJ81176_0661 589470 - 590552 + | hypothetical protein dprA 590542 - 591315 + | DNA processing protein A CJJ81176_0663 591312 - 591695 + | Holliday junction resolvase-like protein TERM 668 591718 - 591706 - f 77 -4.9 -5.1523 | TCTAGAATAGAAAAA CTTTA TAC TAAAG ATGAAATGCAAAATA TERM 669 591843 - 591831 - g 70 -3.5 -5.08255 | opp_overlap 591818, overlap 591818 ATTTTTAAAACAAAA TTTAA AAT TTAAA AAGATCAACGCTTAT CJJ81176_0664 591724 - 592563 + | NOL1/NOP2/sun family protein TERM 670 592701 - 592680 - T 90 -7.3 -5.08255 | ACTTTGAAAAGAAAA TCACAGCGT GAAA AGGCTGTGA ATAAAGTTGAAATTT msrA 593236 - 592739 - | methionine sulfoxide reductase A TERM 671 592907 - 592933 + g 71 -6.8 -3.98107 | TTTTTGCTGTTCTTC GATGAAATTTTG AGC TAAAATTTTATC TTCTTCATTTTCGTA ppa 593795 - 593277 - | inorganic pyrophosphatase TERM 672 593381 - 593391 + g 75 -4 -5.19819 | opp_overlap 593381, overlap 593383 CTAAAATTTTATAAG TTTC AAA GAAA TTTTTGATTTTATTT adk 594383 - 593805 - | adenylate kinase aspS 596131 - 594380 - | aspartyl-tRNA synthetase TERM 673 595271 - 595253 - G 79 -7.6 -4.3078 | opp_overlap 595251 AATCACATCAATAAA TTTAAGAT CAA ATCTTAAA TCTGGCTTATCAGAG TERM 674 596549 - 596568 + G 78 -4.4 -5.40072 | gap 1, opp_overlap 596549 596550 TTTAAAGTTGATGAA GC-TGAAAA TTT TTTTCAAGC TTTTTTTCAAGGAGA CJJ81176_0669 596222 - 597082 + | ATP-NAD kinase, putative TERM 675 597962 - 597942 - g 73 -5.5 -4.6468 | opp_overlap 597932, overlap 597932 TGAAAGCATAGAAAA TGCTTTAGA AGT TTTAAAGCA AAAGAAACATGAACT TERM 676 598033 - 598015 - g 80 -6.1 -4.96028 | overlap 598027 TTTGAAAAAAAAGAA CTTGAAA AAAAA TTTCAAG AATTAAAACAAAAAT TERM 677 598041 - 598027 - g 80 -2.2 -5.81032 | overlap 598015 GAACTTGAAAAAAAA TTTCAA GAA TTAAAA CAAAAATTAGAAGAA TERM 678 598185 - 598173 - g 72 -4.9 -4.92385 | opp_overlap 598173 GACACTTAAAGAAAA TGAAA AAA TTTCA ATTTTAGGCAAAGAT TERM 679 598377 - 598362 - g 72 -7.6 -3.69618 | TTTAAGCGGAAAAGA GGCTAT GAGT ATAGCC AAGGTTTTAGAGGAG recN 597082 - 598605 + | DNA repair protein RecN CJJ81176_0671 598708 - 599952 + | response regulator/GGDEF domain-containing protein CJJ81176_0672 599943 - 600758 + | TatD family hydrolase TERM 680 601745 - 601735 - g 72 -2.6 -5.36314 | TAAAATAGCAAAAAA TTAT AAT ATAA GTGTTGATGAAATTC CJJ81176_0673 600758 - 601876 + | membrane-bound lytic murein transglycosylase D, putative rlpA 601863 - 602663 + | rare lipoprotein A TERM 681 603135 - 603121 - g 81 -2.8 -5.67063 | TTTAGTAGAAAAAAA TCATCT AGA AGAAGA ATGGAATAAGCTTTG CJJ81176_0675 602669 - 603157 + | YrbI family phosphatase CJJ81176_0676 603211 - 603663 + | hypothetical protein CJJ81176_0677 603645 - 604106 + | OstA family protein CJJ81176_0678 604103 - 604699 + | GTPase EngB CJJ81176_0679 604696 - 605190 + | hypothetical protein TERM 682 606558 - 606572 + G 70 -4.2 -5.00884 | overlap 606559 AATCGCAAAAGGTGG AGAGGT TAT ACCTCA TTTTTTAAAAAGCAT TERM 683 606559 - 606571 + G 72 -7.7 -3.60048 | overlap 606558 ATCGCAAAAGGTGGA GAGGT TAT ACCTC ATTTTTTAAAAAGCA pbpC 605191 - 606996 + | penicillin-binding protein 2 TERM 684 607015 - 607030 + T 74 -4.8 -5.055 | opp_overlap 607011 607015 TTAGTTGTAAATTGA GTTTTT CAAA AAAAAC TTTTTTAGCAATTGG TERM 685 607088 - 607054 - T 95 -10.3 -4.58283 | opp_overlap 607044 607056 CAATTGGTTTAAAAA CCTTGTATTAAAC AAATTATAA GTTTAATACAAGG AAAATTTATCTATGT CJJ81176_0681 608907 - 607117 - | M24 family peptidase TERM 686 607770 - 607749 - G 73 -5.9 -4.58644 | AATCAATAAGTAAAA GCCCATCTT TTTT AAGATAAGC AAAACTCTCTTTTGT CJJ81176_0682 610005 - 608923 - | di-/tripeptide transporter TERM 687 609759 - 609747 - GR 70 -6.3 -4.02049 | overlap 609745 CAAGGATTAAAAATA TTGCT CCA AGCAA AACAATACCTGATAC CJJ81176_0683 610475 - 609978 - | di-/tripeptide transporter CJJ81176_0684 610891 - 610646 - | di-/tripeptide transporter TERM 688 610743 - 610732 - G 75 -4.4 -5.18726 | opp_overlap 610732 GCGCTACAACAAAAA GCAT CCAC ATGC ATTGTTCAAAAATAT CJJ81176_0685 612174 - 611119 - | di-/tripeptide transporter TERM 689 611304 - 611286 - G 75 -4.7 -5.05116 | opp_overlap 611286 611286 CTACAAAGAATAAAA CAATTAA AATTG TTAATTG CTGTTTTTCTCTTTT TERM 690 611685 - 611669 - G 71 -8 -3.4033 | opp_overlap 611668 AAACCACATATAAGA GGAGCA ATGAA TGCTCC AATGTTAATTCCTAT TERM 691 612284 - 612246 - R 74 -7.9 -3.65638 | ATAATTAAATTACAA TATTTTTAAATATTTTT TTTAT AATAATATTTAAAAATA TAACATTTTAATATT CJJ81176_0686 612849 - 612301 - | hypothetical protein CJJ81176_0687 613897 - 612842 - | hypothetical protein TERM 692 613572 - 613584 + g 72 -2.7 -5.47399 | overlap 613581 TCCATATTACTTGGG TTGAA ATT TTCGA TTTTTTTAAGATTGA era 614810 - 613935 - | GTP-binding protein Era TERM 693 614498 - 614519 + g 71 -5.9 -4.50976 | GTACTTGTGGGTTTA GACTAAGAA AATT TTCATAGTC TTTTGTACTATCAAA hslU 616126 - 614807 - | ATP-dependent protease ATP-binding subunit hslV 616665 - 616123 - | ATP-dependent protease peptidase subunit rplI 617108 - 616665 - | 50S ribosomal protein L9 argG 618341 - 617121 - | argininosuccinate synthase TERM 694 618450 - 618472 + H 77 -2 -5.86061 | opp_overlap 618451 618455, overlap 618451 AAAGCAAAGGCATAA GCAAATTTTG TTC CAAAAATTGA TTTTTTTTGCTAAAA CJJ81176_0693 618496 - 618741 + | S4 domain-containing protein TERM 695 618859 - 618841 - g 85 -8.2 -4.62069 | opp_overlap 618844 TGGCTAGCGGAAAAA CAAGCTTA GTA CAAGCTTG GGTTAAATTTCTTGG CJJ81176_0694 618738 - 619145 + | hypothetical protein CJJ81176_0695 619129 - 619866 + | ABC transporter, ATP-binding protein rpoN 619866 - 621116 + | RNA polymerase factor sigma-54 TERM 696 622083 - 622105 + G 72 -8.4 -3.30124 | AGGTGTATTTGATTT CTTGCGTCCA AAC TGGGGGCAAG TTGTAAAAAATGGCA dcuB 621280 - 622704 + | anaerobic C4-dicarboxylate transporter TERM 697 622734 - 622709 - f 73 -9.1 -2.77895 | opp_overlap 622710, overlap 622708 GTTATCTTTAACAAT TTTTAGCAGGA TTTT TCCTGCTAAAT TCTTCATTTGTCTTT TERM 698 622710 - 622733 + F 100 -12.6 -3.95911 | opp_overlap 622709 622708 TTATCTTTAACAATT TTTAGCAGGA TTTT TCCTGCTAAA TTCTTCATTTGTCTT CJJ81176_0698 622846 - 622959 + | hypothetical protein TERM 699 623539 - 623554 + G 82 -9 -3.95456 | TTTATGAAGATTTTA CGCGTA TTAT TACGCG TTTGATGTTGCCTTT CJJ81176_0699 623043 - 624734 + | potassium-transporting ATPase, A subunit, degenerate TERM 700 624975 - 624997 + G 77 -10 -3.01712 | opp_overlap 624971, overlap 624972 TTATTTATAACCTTG CTTTTTGCAA ATT TTGCAGAAAG TATTGCAGAAGGAAG CJJ81176_0700 624744 - 626789 + | potassium-transporting ATPase subunit B CJJ81176_0701 626791 - 627399 + | potassium-transporting ATPase, C subunit, putative TERM 701 628024 - 628014 - g 70 -5.4 -4.56187 | TATAAGGAAAAACAA GCTA AAC TAGC ACTTGAAAATTTCTT TERM 702 629036 - 629024 - g 72 -2.7 -5.38054 | TCCTATAAATAAAAA CAATA TTT TATCG AAACCTTTGTTGTTT CJJ81176_0702 627402 - 629330 + | truncated KdpD protein uvrB 631298 - 629325 - | excinuclease ABC subunit B CJJ81176_0704 631452 - 631682 + | hypothetical protein CJJ81176_0705 631672 - 631914 + | hypothetical protein CJJ81176_0706 631911 - 632348 + | hypothetical protein TERM 703 632592 - 632606 + G 77 -7.2 -4.31329 | TTTATTATTATGCTT CAAAAC TTG GTTTTG TTTTGGGCTTTTTCG TERM 704 633956 - 633902 - g 70 -4.4 -4.94487 | TTAGAAAATAGAAAA GATCTTTACCCCCCATTTAAACGCCT TTT AAGAGTTCTTATAGAAGATAAAGATC AAAAAAGTGCACAAA priA 632330 - 634183 + | primosome assembly protein PriA CJJ81176_0708 635587 - 634193 - | invasion phenotype protein ispG 635733 - 636806 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 705 636840 - 636809 - T 84 -6 -5.093 | gap 1, opp_overlap 636817, overlap 636817 TGTAAAAGAATAAAA GCCAAGAAGCAAGGT TTA ACCTTGCTT-TTAGA ATGGCCATATCGCTT TERM 706 636833 - 636817 - T 93 -10.9 -3.84389 | opp_overlap 636817, overlap 636809 AATAAAAGCCAAGAA GCAAGGT TTA ACCTTGC TTTTAGAATGGCCAT TERM 707 636817 - 636833 + T 93 -10.9 -4.13945 | opp_overlap 636817 636809 AATAAAAGCCAAGAA GCAAGGT TTA ACCTTGC TTTTAGAATGGCCAT flgH 637534 - 636836 - | flagellar basal body L-ring protein TERM 708 637041 - 637030 - G 70 -5.8 -4.25104 | opp_overlap 637029 CTCCGTTGATTAAAA GCTC TCTT GAGC CTTCGATAAAATAAT TERM 709 638626 - 638638 + G 74 -6.3 -4.44277 | ATTTTCTTTATGGGA CTTGA AGA TCAAG TTTTAGCTTTTGCTG TERM 710 639005 - 638989 - g 95 -10.9 -3.87641 | opp_overlap 638986 638985 638984, overlap 639002 639003 AATATTTGTTACAAA GCAGTTC AAA GAACTGC TAATGCTTTAGCAAT pta 637594 - 639129 + | phosphate acetyltransferase ackA 639143 - 640333 + | acetate kinase TERM 711 640344 - 640368 + T 86 -7.4 -4.8543 | opp_overlap 640344 ATTAAATTTTAAAAA CTATATAAAT TTTTT ATTTATATAG TTTTTATCAAGGTTA TERM 712 640368 - 640344 - T 81 -7.4 -4.71482 | opp_overlap 640344 ATTAAATTTTAAAAA CTATATAAAT TTTTT ATTTATATAG TTTTTATCAAGGTTA CJJ81176_0713 644113 - 640361 - | hypothetical protein TERM 713 640560 - 640574 + g 76 -5 -5.01535 | overlap 640561 AATTTTTGTTTTAGC TCATCA AAA TGATGG TTTTTATCATTGTAA TERM 714 641580 - 641600 + g 82 -4.1 -5.60993 | opp_overlap 641575 TAAGCTAAATTTCCA TCTTTTTTT AAA AGAGAAAGA TTTTTTTCTACAAAA TERM 715 641772 - 641793 + g 80 -6.7 -4.73682 | gap 1 TCTTTTTTCTTGCTA GCGATTA-AG CTT CTATAATCGC TTTTGTATTGTGGAA CJJ81176_0714 644263 - 644754 + | hypothetical protein CJJ81176_0715 645680 - 644742 - | hypothetical protein TERM 716 645331 - 645352 + g 89 -3.1 -6.17669 | opp_overlap 645336, overlap 645336 TTTGCTTTTTTTCTG CTAAATAAA AAAT TTTTTTTAG TTTTTTTATTTTCTT TERM 717 645406 - 645417 + g 70 -4.4 -4.86902 | GAAAAAATTTTTTTA GCAA GAGA TTGC TTTTCTTCTAATTTA mraW 646612 - 645680 - | S-adenosyl-methyltransferase MraW CJJ81176_0717 646777 - 648267 + | peptidyl-prolyl cis-trans isomerase D,-like protein ftsA 648270 - 649652 + | cell division protein FtsA TERM 718 649884 - 649873 - g 78 -3 -5.60993 | TTGGCGAGAAAAAAA CTAA AGGT TTAG GTGCTGGTATGCTTC ftsZ 649668 - 650780 + | cell division protein FtsZ TERM 719 650816 - 650795 - f 70 -7.4 -3.58536 | opp_overlap 650795 AAATTGATTTTTAAA GCAAGATT GAGTCA AATCTTGC TTTTTATAGTTTAAA TERM 720 650795 - 650816 + F 90 -7.4 -5.04325 | opp_overlap 650795 AAATTGATTTTTAAA GCAAGATT GAGTCA AATCTTGC TTTTTATAGTTTAAA CJJ81176_0720 650936 - 651748 + | flagellar basal-body rod protein flgG 651777 - 652568 + | flagellar basal body rod protein FlgG TERM 721 652605 - 652631 + T 100 -12.5 -4.57073 | TTAATTCTTTTTTAG TTTAATGGCGT GTTAA ACGCCATTAAA TTTTTAGCAAGAGTA glnA 654065 - 652635 - | glutamine synthetase, type I CJJ81176_0723 654268 - 654963 + | hypothetical protein TERM 722 656139 - 656124 - g 71 -4.8 -4.76802 | overlap 656120 656137 GCTAAAAACAATAAA GAATTT AGCG AAATTC ATAGTGGCAATGAAC CJJ81176_0724 654960 - 656213 + | U32 family peptidase purE 656214 - 656708 + | phosphoribosylaminoimidazole carboxylase catalytic subunit CJJ81176_0726 656718 - 657254 + | hypothetical protein glyQ 657266 - 658129 + | glycyl-tRNA synthetase subunit alpha TERM 723 658449 - 658471 + G 75 -7.2 -4.08064 | opp_overlap 658449, overlap 658453 ATTTATTTTACGGAA GAAATTTTAG GTT TTAAAATTTC TTTTAAAGACGAATT TERM 724 658566 - 658547 - g 80 -2.2 -5.75342 | CTGGGTGAAAAAAAA GTTAAATT TACA AATTTTAC GTGTAAGCAATTGTG CJJ81176_0728 658116 - 658841 + | hypothetical protein TERM 725 659410 - 659395 - g 75 -4.7 -5.14563 | GTTTTTATGAAAAAA TTCGC AAATGG GCGAA AAATACTGCTGTAGT CJJ81176_0729 658851 - 659567 + | hypothetical protein TERM 726 660005 - 660016 + G 83 -3 -5.69976 | GATAAATCTTATCAT TCTT ATCA AAGA TTTTCTTTTTTTTAT TERM 727 660022 - 660038 + G 86 -5.3 -5.64304 | TTATCAAAGATTTTC TTTTTTT TAT AAAAAAA TTTTTTCTTATATTG waaA 659564 - 660721 + | 3-deoxy-D-manno-octulosonic-acid transferase TERM 728 660889 - 660869 - g 77 -4.8 -5.2197 | GATAAAAACCAAAAA TCCTCAAA TTATT TTTGAAGA TGATAAGATTATTGC CJJ81176_0731 660702 - 661454 + | RNA pseudouridine synthase family protein TERM 729 661637 - 661624 - g 74 -3.1 -5.49809 | overlap 661614 GAAACCTTAAAAAAA GCTCT TTTA AAAGC AGATGTTCACCATAA ffh 661522 - 662859 + | signal recognition particle protein TERM 730 662900 - 662861 - f 89 -10.5 -3.67864 | opp_overlap 662861, overlap 662896 GAAGGCAATTTTAAA TTTTATTTATAAATACT TTTTAT AGTATCTATAAATAAAA TTTTTAATTTTTAAG TERM 731 662861 - 662900 + F 100 -8.3 -5.18355 | opp_overlap 662861 662896 GAAGGCAATTTTAAA TTTTATTTATAAATACT TTTTAT AGTATCTATAAATAAAA TTTTTAATTTTTAAG rpsP 662924 - 663151 + | 30S ribosomal protein S16 CJJ81176_0734 663154 - 663396 + | hypothetical protein rimM 663389 - 663928 + | 16S rRNA processing protein RimM TERM 732 664592 - 664580 - g 70 -6.3 -4.07568 | TGGCGTCTTGCAAAA CGAAA TTT TTTCG TCCAGATTTATTTTT trmD 663925 - 664629 + | tRNA (guanine-N(1)-)-methyltransferase rplS 664640 - 664996 + | 50S ribosomal protein L19 TERM 733 664987 - 665013 + F 80 -9.8 -3.31144 | opp_overlap 664994, overlap 664994 GCGTATTAAAGAGCT TAAAAAATAATT TAT AATTATTTTTTA TTATAAGCCTAACAA TERM 734 665006 - 664994 - f 70 -3.5 -5.10077 | opp_overlap 664994 664987 AAAGAGCTTAAAAAA TAATT TAT AATTA TTTTTTATTATAAGC TERM 735 664994 - 665006 + F 76 -3.5 -5.55769 | opp_overlap 664994, overlap 664987 AAAGAGCTTAAAAAA TAATT TAT AATTA TTTTTTATTATAAGC CJJ81176_0738 665129 - 665542 + | transthyretin-like protein TERM 736 666616 - 666602 - g 72 -8.6 -2.96984 | TAAATTTAGTATATA GCATAG ATC CTATGC ATGGAAATACAGTAA CJJ81176_0739 665566 - 666906 + | 3-deoxy-7-phosphoheptulonate synthase TERM 737 667051 - 667041 - g 78 -4 -5.45802 | overlap 667035 TGGTTAAAACAAAAA TCTT TTG AAGA ACTTATCAATACTGC CJJ81176_0740 666903 - 667232 + | hypothetical protein TERM 738 667233 - 667254 + F 100 -7.4 -5.5604 | opp_overlap 667235 667237 GAGAAAATGTTATGA TAGAGTGT TTGATT ACACTCTA TTTTTTATTAATTGA TERM 739 667424 - 667438 + F 70 -8.6 -2.5805 | overlap 667423 CGCTTTGTAGTTCTT CTGCAA CCC TTGCAG CTTGTGGGCGATAAT TERM 740 670870 - 670858 - g 70 -6.3 -4.04608 | overlap 670856 AAGAAATAGAAAACA TCATC AAA GATGA AAATTTAAAAAATAA TERM 741 671014 - 671004 - g 88 -4 -5.68039 | AAAGCTATAAAAAAA TTTG GAG CAAA AAAAGATTTTAAAAA dnaE 667680 - 671282 + | DNA polymerase III subunit alpha TERM 742 671277 - 671304 + T 90 -8.6 -4.66609 | opp_overlap 671276 671274 671277, overlap 671278 ATTTCTAATAAATAT GCTTAAGTAAGA TTGT TCTTACTTAAGA TTTTTAAATAAAATG TERM 743 671304 - 671277 - T 71 -8.6 -2.80512 | opp_overlap 671277 671278, overlap 671276 671274 ATTTCTAATAAATAT GCTTAAGTAAGA TTGT TCTTACTTAAGA TTTTTAAATAAAATG TERM 744 671278 - 671303 + T 91 -12.1 -3.39483 | opp_overlap 671276 671277 671274, overlap 671277 TTTCTAATAAATATG CTTAAGTAAGA TTGT TCTTACTTAAG ATTTTTAAATAAAAT CJJ81176_0742 671927 - 671295 - | hypothetical protein TERM 745 671939 - 671962 + r 79 -8.2 -3.85522 | opp_overlap 671941, overlap 671941 671944 TCATTTTGATAAAGA AATAAGCCCT ATTT AGGGCTTATA TTATTGTAATAAATT TERM 746 671941 - 671960 + r 87 -10.8 -3.50808 | opp_overlap 671941, overlap 671939 671944 ATTTTGATAAAGAAA TAAGCCCT ATTT AGGGCTTA TATTATTGTAATAAA TERM 747 671960 - 671941 - R 100 -10.8 -4.55697 | opp_overlap 671941 671939 671944 ATTTTGATAAAGAAA TAAGCCCT ATTT AGGGCTTA TATTATTGTAATAAA TERM 748 671944 - 671957 + r 79 -8.1 -3.87967 | opp_overlap 671941, overlap 671941 671939 TTGATAAAGAAATAA GCCCT ATTT AGGGC TTATATTATTGTAAT flaC 672712 - 671963 - | flagellin subunit protein FlaC CJJ81176_0744 673221 - 672751 - | hypothetical protein TERM 749 673157 - 673143 - G 95 -7.2 -5.86061 | opp_overlap 673143 673142 TTTGAGGAAAAAAAA TTGTTG GTG CAACAA CTATTCCTAGTATGA CJJ81176_0745 674049 - 673234 - | HemK family modification methylase CJJ81176_0746 675233 - 674046 - | M48 family peptidase TERM 750 674801 - 674789 - G 70 -6.3 -4.18351 | AAAGCAAAGCATAAA GGATT AAA AATCC AAATATTAAAGTTAA CJJ81176_0747 675361 - 675546 + | hypothetical protein mogA 676085 - 675543 - | molybdenum cofactor biosynthesis protein TERM 751 675825 - 675813 - G 74 -9.1 -2.80113 | opp_overlap 675812 675811 CATCATTTTATCACA CACGG CTT CCGTG GCTTCTGGGGTTACA TERM 752 675958 - 675972 + g 72 -2.9 -5.4251 | overlap 675954 GGGATTAATTCTTTA TGATA AATAA TATCA TTTTTTATATATGAA corA 677089 - 676106 - | magnesium and cobalt transport protein CorA TERM 753 676740 - 676760 + g 73 -5.6 -4.59773 | GTGCTAAATTCGTTA TATCTTAT AGTAA ATAAGATA TTTTTAGCGGTAGCA CJJ81176_0750 677206 - 678252 + | ABC transporter, periplasmic substrate-binding protein TERM 754 678382 - 678396 + G 72 -2.8 -5.43866 | opp_overlap 678377 TACAGTAAAACCTCC TAAGGA TGC TCCTGA TTTTTTTAAAACTTA TERM 755 679549 - 679569 + G 72 -4.1 -5.02074 | overlap 679551 TGATGATAATGAGTT TATTTTACT TGA AGTAAAAGA TTTTTTAAAGAGTAA CJJ81176_0751 678263 - 679588 + | hypothetical protein TERM 756 679751 - 679765 + G 75 -7.1 -4.1899 | opp_overlap 679751 ACGAGTGCTTATTAA CAGGC GTAAA GCCTG TTTTAAGTGGGATAA CJJ81176_0752 679588 - 680394 + | hypothetical protein CJJ81176_0753 680391 - 681230 + | ABC transporter, permease protein CJJ81176_0754 681231 - 682010 + | ABC transporter, permease protein TERM 757 682132 - 682144 + G 72 -7.7 -3.6878 | TGGGCCCAAGTGGCT GTGGA AAA TCCAC TCTTTTAAGGTGTAT CJJ81176_0755 682014 - 683003 + | ABC transporter, ATP-binding protein TERM 758 683134 - 683115 - g 84 -6.6 -5.30686 | overlap 683132 AATATTTAGAAAAAA TTGTTTTT TATC AAAAACAA TATCAAGAAAAAAAG TERM 759 683314 - 683329 + G 88 -7.6 -4.8622 | opp_overlap 683314 683313 AAGGTGTATTATAAT TTCAGC TACG GCTGAA TTTTTAGTTAGAAAA CJJ81176_0756 683000 - 683638 + | HAD family hydrolase TERM 760 683643 - 683664 + T 91 -11.7 -3.57161 | opp_overlap 683643 683646, overlap 683646 TAACTTTTTAAGCTA TAAGCGTGA AAAT TCACGCTTA TTCTAATTCATATTT TERM 761 683664 - 683643 - T 87 -11.7 -2.53213 | opp_overlap 683643 683646, overlap 683646 TAACTTTTTAAGCTA TAAGCGTGA AAAT TCACGCTTA TTCTAATTCATATTT TERM 762 683646 - 683661 + T 83 -9 -3.90241 | opp_overlap 683646 683643, overlap 683643 CTTTTTAAGCTATAA GCGTGA AAAT TCACGC TTATTCTAATTCATA TERM 763 683661 - 683646 - T 77 -9 -3.41878 | opp_overlap 683643 683646, overlap 683643 CTTTTTAAGCTATAA GCGTGA AAAT TCACGC TTATTCTAATTCATA cjaC 684417 - 683662 - | cjaC protein TERM 764 684660 - 684638 - H 77 -5.8 -4.77986 | opp_overlap 684638 TTAAATATTGAAAAA TAAAATATCA AAT TAATATTTTA TTTTATAATCAACTC CJJ81176_0758 684738 - 685379 + | hypothetical protein CJJ81176_0759 685401 - 687329 + | hypothetical protein CJJ81176_0760 687341 - 687775 + | hemagglutination domain-containing protein CJJ81176_0761 688041 - 689189 + | hypothetical protein CJJ81176_0762 689255 - 689380 + | hypothetical protein TERM 765 689409 - 689393 - f 72 -8.1 -3.4314 | overlap 689391 TAAATTTTAATAATA TCCAAAT GAA ATTTGGA AAAGAAACAAAAATA CJJ81176_0763 689540 - 690619 + | hypothetical protein TERM 766 690814 - 690788 - g 79 -5.9 -5.04082 | opp_overlap 690795, overlap 690791 TAAATAATAATAAAA TAAGAGAGCTT ATAGA AAGCTCTCCTG AAGCAAATGAACCAC TERM 767 690811 - 690791 - g 100 -9.8 -4.55653 | opp_overlap 690795, overlap 690788 ATAATAATAAAATAA GAGAGCTT ATAGA AAGCTCTC CTGAAGCAAATGAAC TERM 768 690889 - 690869 - g 85 -4.7 -5.59502 | TAAAAAATCAAAAAA GCCCTGTAA ATT TTAAAGAGC AAAATACTACAAATA CJJ81176_0764 690715 - 692241 + | putative outer-membrane protein CJJ81176_0765 692260 - 692403 + | hypothetical protein TERM 769 692621 - 692651 + T 72 -3.4 -5.30686 | opp_overlap 692645, overlap 692622 ATTTTATAAATTAAC TCTTTTGGTTTTTA TTT TATAAACTAAAAGC TTTTTTATAAATCTT TERM 770 692846 - 692868 + T 79 -7.9 -3.85891 | opp_overlap 692846 TCTAATAATTAAAAA GATTAAAAG CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 771 692868 - 692846 - T 95 -7.9 -4.99435 | opp_overlap 692846 TCTAATAATTAAAAA GATTAAAAG CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 772 692896 - 692877 - T 72 -8 -3.31322 | TTTAATCTTTCATAA CTTTTTCT TTGA AGAAAAAG ATTAAACTATCTATA TERM 773 692932 - 692896 - T 77 -5.3 -5.06414 | opp_overlap 692903 TTCTTTGAAGAAAAA GATTAAACTATCTATAA TTT TTATGGAGAGTTTGATC CTGGCTCAGAGTGAA TERM 774 694394 - 694411 + T 74 -9.1 -3.07291 | opp_overlap 694394 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 775 694878 - 694898 + T 78 -6.9 -4.56187 | overlap 694880 TAATATATATACTTC CTTTAGGTT TTA AACCTAATG TTCTTTTTAATTATC TERM 776 694880 - 694896 + T 79 -8.1 -3.86437 | overlap 694878 ATATATATACTTCCT TTAGGTT TTA AACCTAA TGTTCTTTTTAATTA TERM 777 695437 - 695420 - T 91 -11.3 -3.66803 | opp_overlap 695419 695418, overlap 695413 GCGCAAGAGGGCAAA CCCAGTG CTTG CACTGGG GGTTGTAGGACTGCA TERM 778 698223 - 698233 + T 70 -5.4 -4.57341 | AATAAAGCATCACTT CCTT GTT AAGG TTTTTAAGAAAGCTT CJJ81176_0770 698454 - 698302 - | hypothetical protein CJJ81176_0772 698848 - 700029 + | hypothetical protein TERM 779 700854 - 700814 - g 100 -14.3 -4.36343 | opp_overlap 700814 700826 GAAGCAATGAAGAAA GAGCTTATCAAATTTATCA AAA TGATGAATTTGTTAAGCTC TTAGATTGCGGAGTT TERM 780 700814 - 700854 + G 100 -16.5 -3.17571 | opp_overlap 700814, overlap 700826 GAAGCAATGAAGAAA GAGCTTATCAAATTTATCA AAA TGATGAATTTGTTAAGCTC TTAGATTGCGGAGTT hrcA 700246 - 701037 + | heat-inducible transcription repressor TERM 781 701522 - 701508 - g 89 -8.6 -4.56775 | ACCGTGCTTCAAAAA GGCTAT AAA ATAGCC GATCGCGTAATCCGC grpE 701034 - 701564 + | co-chaperone protein GrpE TERM 782 703440 - 703426 - g 85 -2.8 -5.98675 | overlap 703429 703431 GATAAAAAGAAAAAA GATGAC GAT GTAATC GACGCTGAAGTTGAG dnaK 701587 - 703458 + | molecular chaperone DnaK CJJ81176_0776 703597 - 705507 + | type I restriction-modification system, M subunit TERM 783 706228 - 706216 - g 76 -6.3 -4.53398 | overlap 706213 TAATATTAAAAACAA GTAGT GGC ACTAC TCCAGATAGTGGTAA TERM 784 706757 - 706726 - g 74 -5.3 -4.88288 | gap 2, overlap 706727 706729 706731 TAAAAGAATACAAAA CCACACTCACAAACC AAGC GGTTTGTG-GTA-GG ATAGGAAAAAGTTAA CJJ81176_0777 705504 - 706772 + | type I restriction modification DNA specificity domain-containing protein TERM 785 707088 - 707110 + G 78 -9.2 -3.37018 | opp_overlap 707099, overlap 707079 GAAGAAGCATCTTTA GTTTTAGGAG ACT CTCCTAGAGC TTCATGTGCTTTATT CJJ81176_0778 706872 - 707465 + | hypothetical protein TERM 786 707666 - 707642 - g 72 -4.5 -4.85918 | TATTATAGAAGAAAA TTCAAATATTC ATA AAATATTTAAA AATAACAATACTAGT CJJ81176_0779 707481 - 708470 + | hypothetical protein TERM 787 709691 - 709679 - g 78 -6.3 -4.7416 | opp_overlap 709679 709690 TCAAAACTTTAAAAA GCAAA ACT TTTGC TATCATTATCGATGA TERM 788 709756 - 709745 - g 79 -5.8 -5.055 | GTAATGCTCAAAAAA TGGC AGAA GCCA TAAGGGATAAAAGCG TERM 789 710144 - 710128 - g 70 -3.7 -5.14645 | ACAATCGAACAAAAA TCACAAA TCA TGTGTGA GCATTTTTTCCAAAA TERM 790 711170 - 711158 - g 76 -7.7 -3.92625 | TAGACTTTAATGAAA GCGAT AAA ATCGC TAAAATCTTATACGA CJJ81176_0780 708487 - 711402 + | type I site-specific deoxyribonuclease chain R CJJ81176_0781 711498 - 712460 + | hypothetical protein CJJ81176_0782 712530 - 712871 + | hypothetical protein TERM 791 712892 - 712930 + T 74 -5.6 -4.75404 | gap 1, opp_overlap 712898 712901, overlap 712891 712894 712898 TAAGGTTTTAATTTG C-CTAAATAATTCTAGG CTTTAA CCTAGAATTATTTATAG TTTTTAATGAAATTT TERM 792 712894 - 712927 + T 100 -12.8 -3.28472 | opp_overlap 712898 712901, overlap 712891 712892 712898 AGGTTTTAATTTGCC TAAATAATTCTAGG CTTTAA CCTAGAATTATTTA TAGTTTTTAATGAAA TERM 793 712923 - 712898 - T 84 -9.9 -3.55622 | opp_overlap 712891 712898 712894 712892, overlap 712901 TTTAATTTGCCTAAA TAATTCTAGGC TTTA ACCTAGAATTA TTTATAGTTTTTAAT TERM 794 712898 - 712923 + T 86 -9.2 -4.27774 | opp_overlap 712898 712901, overlap 712891 712894 712892 TTTAATTTGCCTAAA TAATTCTAGG CTTTAA CCTAGAATTA TTTATAGTTTTTAAT TERM 795 712920 - 712901 - T 74 -7.2 -3.91488 | opp_overlap 712891 712898 712894 712892, overlap 712898 AATTTGCCTAAATAA TTCTAGGC TTTA ACCTAGAA TTATTTATAGTTTTT aspC 714090 - 712921 - | aspartate aminotransferase TERM 796 713082 - 713096 + g 76 -2.9 -5.51046 | TTTGGCAAAATTTCA TAGAA TCTTT TTCTA TTTTTTGTATATTTA TERM 797 713372 - 713360 - G 70 -5.5 -4.26188 | overlap 713361 GCCATATAGCCAAAA CGCCA TCC TGGCA TAGCTCCACATTTGC TERM 798 713609 - 713619 + g 83 -3.2 -5.71638 | AAAACCTTGGTTTTA GCTG TGA TAGC TTTTTTTAGTTGTTC cysE 714900 - 714262 - | serine acetyltransferase speA 716733 - 714901 - | arginine decarboxylase TERM 799 715206 - 715218 + g 72 -4.9 -4.89852 | CAAGAAAAAACCCTA GAAAA TAA TTTTC TTTTTCTACATCTAC TERM 800 716405 - 716391 - G 70 -5.7 -4.29738 | opp_overlap 716383 716390 CCATAGCGAGTAAAA GCTCT GCTTT AGAGC CTGCTTCAAGTCCGT hisS 717959 - 716733 - | histidyl-tRNA synthetase tdk 718534 - 717956 - | thymidylate kinase TERM 801 718024 - 718035 + g 83 -3 -5.79595 | opp_overlap 718024, overlap 718032 CGTCAAGTGTTAAAA TTTC TATA GAAA TTTTTTCTTTTAAAA coaD 719001 - 718525 - | phosphopantetheine adenylyltransferase CJJ81176_0789 719604 - 719041 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase flgA 720263 - 719601 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 802 720323 - 720335 + r 75 -7.7 -4.06491 | opp_overlap 720323 TATAAGTTTAACAAA GCCTT TAG AAGGC TTTGTATAGAGTTAA TERM 803 720335 - 720323 - R 77 -7.7 -4.21989 | opp_overlap 720323 TATAAGTTTAACAAA GCCTT TAG AAGGC TTTGTATAGAGTTAA CJJ81176_0791 721123 - 720347 - | NLPA family lipoprotein CJJ81176_0792 721903 - 721133 - | NLPA family lipoprotein CJJ81176_0793 722725 - 721952 - | NLPA family lipoprotein TERM 804 722899 - 722919 + r 86 -6.9 -5.03747 | opp_overlap 722902, overlap 722902 CTTATATTTATCTTA AAAGGAGAT ATA ATCTCCTTA TTTTTTGAAACCTTT TERM 805 722916 - 722902 - R 83 -8.6 -4.15006 | opp_overlap 722902 722899 ATATTTATCTTAAAA GGAGAT ATA ATCTCC TTATTTTTTGAAACC TERM 806 722902 - 722916 + r 90 -8.6 -4.61482 | opp_overlap 722902, overlap 722899 ATATTTATCTTAAAA GGAGAT ATA ATCTCC TTATTTTTTGAAACC CJJ81176_0794 723828 - 722917 - | ABC transporter, permease protein CJJ81176_0795 724835 - 723825 - | ABC transporter, ATP-binding protein valS 727452 - 724840 - | valyl-tRNA synthetase TERM 807 724876 - 724886 + g 70 -4 -4.89729 | TTCAACTGATATTTT TTCA AGT TGAA TTTTTAAATTTTCTA TERM 808 724974 - 725002 + g 100 -9.1 -5.79588 | opp_overlap 724977 TTGAAAGCATGGAGT TAAGCTTGAAA CTTTCTT TTTCAAGCTTA TTTTTTTGATTTTCA TERM 809 725094 - 725106 + g 72 -4.1 -5.10461 | CGCTAACATCACATA TTGCC TTT GGTAA TTTTTCTTCACTAAA CJJ81176_0797 728494 - 727475 - | hypothetical protein CJJ81176_0798 728623 - 730653 + | putative ATP-dependent DNA helicase TERM 810 730957 - 730938 - g 71 -2.2 -5.40474 | opp_overlap 730944 ATTTTGCTAAAAAAA TTCCAA GTTTAAGT TTGGAA AATTTAAGCGTTTTA TERM 811 731173 - 731163 - g 72 -2.6 -5.36364 | GTAAAAATATAAAAA TTTA TGC TAAA AATTCCAAAGCTGCT CJJ81176_0799 730694 - 731434 + | major antigenic peptide PEB2 tpx 731533 - 732060 + | thiol peroxidase TERM 812 732067 - 732089 + F 100 -7.8 -5.10968 | opp_overlap 732071 TGCCATTAATTTTGA TTAAGCCC ATTCTTA GGGCTTAA TTTTTATATCTTCAT TERM 813 733291 - 733313 + G 72 -7.8 -3.69069 | overlap 733297 GTAATCACTTTAGAC GATGAAGAGG CTG CTTCTTTATC TTATCTTGGCGTTAA napA 732307 - 735078 + | nitrate reductase napG 735096 - 735836 + | quinol dehydrogenase periplasmic component napH 735836 - 736615 + | quinol dehydrogenase membrane component napB 736615 - 737136 + | periplasmic nitrate reductase, small subunit TERM 814 737143 - 737153 + G 78 -4 -5.48213 | opp_overlap 737143 GTAAAGTAAATAAAT GAAA AAA TTTC TTTTTATTTTGAGTC TERM 815 737294 - 737319 + G 74 -8.5 -3.54459 | opp_overlap 737294 737312 737313, overlap 737313 CAATATAACATTAAA GATAAAAGTTT AAAA GAACTTTTATC TTTGCCAAAGATTAA TERM 816 737319 - 737294 - g 76 -7.8 -4.00882 | opp_overlap 737294 737313, overlap 737312 737313 CAATATAACATTAAA GATAAAAGTT TAAAAG AACTTTTATC TTTGCCAAAGATTAA napL 737141 - 738055 + | napL protein napD 738048 - 738386 + | napD protein TERM 817 738514 - 738504 - g 82 -4 -5.54403 | opp_overlap 738504, overlap 738513 AAAAAAGAACAAAAA GAAT TAA ATTC TAGTTTAGAGAAAGA CJJ81176_0807 738396 - 738569 + | hypothetical protein TERM 818 738564 - 738552 - f 77 -4.9 -5.09685 | GAATATATAGAAAAA TTGTT TAA AACAA AATAGACATTAAAAA CJJ81176_0808 738651 - 738896 + | hypothetical protein CJJ81176_0809 738893 - 739384 + | hypothetical protein TERM 819 739562 - 739573 + GF 83 -3 -5.76633 | ATTGGGCGCACAAGG CTTT GGAA AAAG TTTTTTTGTGTGTAA CJJ81176_0810 739353 - 740471 + | polyA polymerase family protein TERM 820 740815 - 740795 - g 88 -9.1 -4.04326 | opp_overlap 740795 740793 GAAGCAAATATCAAA GCTGTGATT TCA AATCACAAC TCTTTAAAGGATTTA purU 740468 - 741292 + | formyltetrahydrofolate deformylase CJJ81176_0812 742557 - 741289 - | aminotransferase, putative TERM 821 743139 - 743149 + G 78 -4 -5.45802 | overlap 743145 AAGGAAAAATTTGAG CTTT ATC AAAG TTTTTGTTTTGAACA CJJ81176_0813 742599 - 743477 + | hypothetical protein CJJ81176_0814 743481 - 744500 + | sensor histidine kinase TERM 822 745202 - 745190 - g 74 -6.3 -4.47491 | ATACCAATAAAACAA GTTTC ACT GAAAC AGATATAAATTCTAT CJJ81176_0815 744619 - 745893 + | hypothetical protein CJJ81176_0816 747379 - 745952 - | Mur ligase family protein CJJ81176_0817 748099 - 747380 - | hypothetical protein CJJ81176_0818 748316 - 748101 - | prevent-host-death family protein TERM 823 748360 - 748331 - R 87 -9.5 -4.07568 | opp_overlap 748331 TTTTTCTTCCTAAAA TACGCTAAATTTT ATGT ATAATTTAGCGTA TTTTGACTTAAAAGC TERM 824 748331 - 748360 + r 89 -9.5 -4.27316 | opp_overlap 748331 TTTTTCTTCCTAAAA TACGCTAAATTTT ATGT ATAATTTAGCGTA TTTTGACTTAAAAGC ddl 749416 - 748376 - | D-alanyl-alanine synthetase A TERM 825 749213 - 749227 + g 73 -3.6 -5.28826 | ACCTCCTTGTTTGAT GAAAAG TTC TTTTTC TTTTTTATAAGCTTT ruvA 749977 - 749426 - | Holliday junction DNA helicase RuvA TERM 826 749856 - 749840 - G 74 -2.2 -5.5112 | opp_overlap 749840 TTGAGTAATAAAAAA CTCATG CTTTT CTTGAG TTTGAATTTTAGCAG CJJ81176_0821 751812 - 749953 - | hypothetical protein TERM 827 750175 - 750188 + g 76 -5.3 -5.055 | opp_overlap 750175 TTTATTTATAAAAGT TGCTT CAAA AAGCA TTTTTTGCAAATTGA TERM 828 752800 - 752784 - g 70 -5.3 -4.56597 | TTTCTTTTCCAAAAA TTTTAAA ACA TTTAAAA AGTGATCAAGAAAAT TERM 829 752897 - 752915 + G 90 -8.2 -4.86731 | opp_overlap 752907 GTAGGTTCTGTGTTT GCTTTGGA AAT TTCAAAGC TTTTATTTGAAAGAG TERM 830 753168 - 753180 + G 74 -3.3 -5.38326 | CAGTGGCACTTTCAA GCTCT ATT AGTGC TTTTTATTTGCTTGG mviN 751916 - 753367 + | integral membrane protein MviN TERM 831 753602 - 753587 - g 72 -2.6 -5.42862 | gap 1 AGATTTTGAAAAAAA TGA-CAC AAA GTGGTCA AACTTTAGAGGAAAT cysS 753367 - 754755 + | cysteinyl-tRNA synthetase CJJ81176_0824 754748 - 756490 + | ABC transporter, ATP-binding protein/permease MsbA, putative TERM 832 756485 - 756471 - f 86 -5 -5.74086 | opp_overlap 756471 756471 AAAGCAAAGAAAAAA CAAAGC CTA GCTTTA GTTAATTTTAGTTAG pyrD 756522 - 757580 + | dihydroorotate dehydrogenase 2 CJJ81176_0826 757577 - 758827 + | M16 family peptidase dapA 758820 - 759716 + | dihydrodipicolinate synthase CJJ81176_0828 759716 - 760495 + | 7-alpha-hydroxysteroid dehydrogenase TERM 833 760526 - 760499 - T 100 -11.6 -5.27938 | opp_overlap 760497 760517, overlap 760517 ACTTTTAAATAAAAA TTAAGAAAAATC AATG GATTTTTCTTAA AAATATTTTTCAATC CJJ81176_0829 760841 - 760536 - | hypothetical protein CJJ81176_0830 761449 - 760853 - | metallo-beta-lactamase family protein TERM 834 761395 - 761378 - G 70 -6.3 -4.08144 | TGGATCAATGATAAA TTCACCC TTTG GGGTAAA TAAAATATAGCAATT nadE 761523 - 762263 + | NAD+ synthetase TERM 835 762965 - 762985 + G 72 -2.5 -5.42259 | overlap 762968 ATTGTATGAGCATTT TATCAAGGC AAG GGCTTGTTA TTTTTTTAAAGATCA lpxK 762267 - 763193 + | tetraacyldisaccharide 4'-kinase TERM 836 764100 - 764088 - g 80 -6.3 -5.00884 | opp_overlap 764088 764086 ATTTGCGTGAAAAAA GTCTT AAG AAGAC TATTTCTCCAGCTAT thrC 763190 - 764602 + | threonine synthase TERM 837 765242 - 765230 - g 76 -2.7 -5.51165 | AAAATGGTAAAAAAA TCAAA ATG CTTGA AATTTCAACAACAAG kdsB 764599 - 765318 + | 3-deoxy-manno-octulosonate cytidylyltransferase CJJ81176_0835 765409 - 766743 + | hypothetical protein CJJ81176_0836 766837 - 767607 + | amino acid-binding protein TERM 838 767608 - 767622 + T 73 -8.6 -3.17194 | opp_overlap 767596, overlap 767597 GAATTCTTTTTCTAA GAAGGA TTT TCCTTC TTAGGTTACAAAGCT fliP 768357 - 767623 - | flagellar biosynthesis protein FliP TERM 839 768703 - 768684 - g 70 -4.4 -4.85782 | overlap 768692 768694 GCGTTGAAAAAGAAA TTTTAGAA TATT TTCCAAAA ACACAAATTTTAGAG glmU 768500 - 769789 + | UDP-N-acetylglucosamine pyrophosphorylase TERM 840 770196 - 770175 - g 70 -5.3 -4.57353 | TTTTAGCACACAAAA TTCTTTAAA GATA CTTAAAGAA AATAAAGCTTTGATT TERM 841 770425 - 770414 - g 73 -5.8 -4.66833 | TTTCAAGTGGAAAAA TGGC AAAG GCCA TAGCTGATGCTTTTT TERM 842 770896 - 770882 - g 76 -8.6 -3.39657 | overlap 770880 ATGAAAATAAAAGCA CTTTGC AAA GCAAAG AAAAATTGGCATTTG coaBC 769786 - 770940 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 843 771433 - 771461 + G 83 -7.6 -4.66163 | overlap 771430 CGCAAGGCATTAGTG TTTTTACACCTT TTGCT AAGGTGCAAAAA TTTTTAAATGAACAT CJJ81176_0840 770943 - 771554 + | hypothetical protein uppS 771558 - 772226 + | undecaprenyl diphosphate synthase TERM 844 772473 - 772497 + G 83 -6.6 -5.14894 | GCATAATTTTGCTTA TTTTGGCTTA TTCTT TAAGTCAAAA TTTTTATGATTTTTT CJJ81176_0842 772223 - 772999 + | A24 family peptidase CJJ81176_0843 772999 - 774024 + | hypothetical protein truA 774021 - 774746 + | tRNA pseudouridine synthase A ilvA 775954 - 774743 - | threonine dehydratase CJJ81176_0846 776367 - 775954 - | CoA-binding domain-containing protein CJJ81176_0847 776486 - 776902 + | hypothetical protein TERM 845 776931 - 776907 - T 75 -7.2 -4.1552 | opp_overlap 776909 TACCTTGCTAAGAAA TACTCCGCAT TCAAG ATGTGGAGTA TTGACAAATTGATCA TERM 846 776909 - 776929 + T 71 -8.3 -3.04501 | opp_overlap 776907 CCTTGCTAAGAAATA CTCCGCATT CAA GATGTGGAG TATTGACAAATTGAT trmA 777962 - 776889 - | tRNA (uracil-5-)-methyltransferase CJJ81176_0849 779692 - 777959 - | Na+/H+ antiporter family protein TERM 847 778596 - 778579 - G 70 -4.1 -4.8543 | overlap 778581 GAACTCCGATAAAAA TCGCTAC AATA GCAGCAA ACAAAGCAGCTTGGA CJJ81176_0850 780438 - 779689 - | short chain dehydrogenase/reductase family oxidoreductase CJJ81176_0851 781661 - 780435 - | ankyrin repeat-containing protein acnB 784267 - 781721 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase ogt 784322 - 784774 + | methylated-DNA--protein-cysteine S-methyltransferase CJJ81176_0854 785707 - 784766 - | hypothetical protein TERM 848 785388 - 785376 - G 78 -4.1 -5.46706 | ATGTTAAAATAAAAA GCCTT GCA AAGAC TTAGTTCGTAAGATT TERM 849 785586 - 785610 + g 76 -10.1 -2.74853 | opp_overlap 785591, overlap 785585 785591 TCTTTTTTATTGTTA TTAAAGAAGGC AAA GCCTGCTTTAA GTTCGTTTAAATTTA metS 787597 - 785711 - | methionyl-tRNA synthetase CJJ81176_0856 787771 - 787607 - | hypothetical protein fbp 788639 - 787797 - | fructose-1,6-bisphosphatase mobB 789132 - 788641 - | molybdopterin-guanine dinucleotide biosynthesis protein MobB TERM 850 789597 - 789573 - R 87 -11.5 -2.93089 | opp_overlap 789579, overlap 789570 GATTATTTTAAAGCA TCTCTTCCTAG TGT CAAGGAAGAGA CTAGGCTTGTAGCTA CJJ81176_0859 791235 - 789610 - | soluble lytic murein transglycosylase, putative TERM 851 790138 - 790152 + g 79 -5.8 -5.11937 | opp_overlap 790137 790140, overlap 790117 ATTGTCATAATAAGG CATTAT AAA ATAATG TTTTTTAAAATTATT TERM 852 790621 - 790633 + g 72 -2.7 -5.45813 | overlap 790614 TTCTAGCATAGAATG TCTAA ATT TTGGA TTTTCTTTTTTAATA CJJ81176_0860 791513 - 791232 - | YGGT family protein gltX-1 792811 - 791516 - | glutamyl-tRNA synthetase CJJ81176_0862 792897 - 794021 + | Ser/Thr protein phosphatase family protein psd 794018 - 794818 + | phosphatidylserine decarboxylase CJJ81176_0864 795096 - 794815 - | FlhB domain-containing protein CJJ81176_0865 797342 - 795093 - | hypothetical protein CJJ81176_0866 798522 - 797335 - | major facilitator family protein TERM 853 797610 - 797579 - G 71 -7.4 -3.73042 | TTGTTTACTAAAACA TCATTTGCTCTAGC AAGT GCTAAAGCATATAA ACAAAATATTCCTAT CJJ81176_0867 799003 - 798500 - | hypothetical protein TERM 854 798900 - 798888 - G 74 -6.3 -4.36348 | overlap 798885 AAAACACTAAAAGAA GCTAT TTC ATAGC TTAAAAATGTATCTA CJJ81176_0868 799218 - 799003 - | hypothetical protein hemL 800603 - 799329 - | glutamate-1-semialdehyde aminotransferase TERM 855 799633 - 799654 + g 79 -5.2 -5.29885 | TTTTTTGCTAATTTT CCAAGTTT GTTATA AAGCTTGG TTTTCTTTTTGGCTT TERM 856 800575 - 800588 + g 80 -2.4 -5.73978 | GCGATGAATTTACAC GCTT CTTTAA AAGC TTTTTTGTTTGTCAT CJJ81176_0870 800947 - 800600 - | hypothetical protein TERM 857 801099 - 801089 - g 91 -4 -6.11229 | ATTAAAAGAAAAAAA TCAA TTT TTGA AAAGCAAAGGGATTG folD 801027 - 801875 + | folD bifunctional protein TERM 858 802415 - 802383 - g 71 -2.2 -5.48825 | gap 2, overlap 802385 802387 802389 TATGATCCAAAAAAA GATATAGAAAGCGATA TTT TA-CGCTTTCT-TAGC ATAGGTGATTTTGCC lepB 801885 - 802733 + | signal peptidase I TERM 859 802731 - 802757 + T 95 -11.1 -3.90316 | opp_overlap 802729 802734, overlap 802729 802734 GAGGATAAATTAAGC TAATGTTTGTG AAAAA CACAAACATTA TATTTTTAAAAGCGT TERM 860 802734 - 802754 + T 83 -8.4 -4.07746 | opp_overlap 802734 802729, overlap 802731 802729 GATAAATTAAGCTAA TGTTTGTG AAAAA CACAAACA TTATATTTTTAAAAG TERM 861 802754 - 802734 - T 73 -8.4 -3.27667 | opp_overlap 802731 802729 802734, overlap 802729 GATAAATTAAGCTAA TGTTTGTG AAAAA CACAAACA TTATATTTTTAAAAG TERM 862 802770 - 802784 + T 71 -2.8 -5.63103 | opp_overlap 802769 802770, overlap 802771 TTATATTTTTAAAAG CGTGAT TTC ATCACC TTTTTTTAATTCACC CJJ81176_0873 803915 - 802755 - | molybdopterin biosynthesis MoeA protein, putative murA 805168 - 803912 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 863 805217 - 805185 - R 76 -6.6 -4.56597 | gap 1, opp_overlap 805185 TTTTTCCTTGAAAAA GTTTAAAAATGC-AT CATT ATAGCATTCTTAAAC TTTTGAAAAAATATA CJJ81176_0875 805662 - 805234 - | hypothetical protein TERM 864 806371 - 806389 + G 100 -9 -5.72616 | opp_overlap 806368 GGGTTTAATTCACTA TGCTTTTA ACT TAAAAGCA TTTTTTTCTATGGGT CJJ81176_0876 805757 - 806629 + | integral membrane protein pabA 807182 - 806616 - | para-aminobenzoate synthase glutamine amidotransferase, component II TERM 865 806946 - 806958 + g 85 -3.5 -5.79526 | overlap 806957 TCCTAAACATATGCC TAAAA TTT TTTTA TTTTTTTTAAAATAT pabB 808963 - 807179 - | para-aminobenzoate synthase glutamine amidotransferase, component I TERM 866 807432 - 807420 - G 72 -2.7 -5.40072 | TTTTCGTTAAAAAAA GCTAT GTC ATAAC ACAAGTTTTGCTGCC TERM 867 808723 - 808734 + g 74 -3 -5.40072 | CGATATCTTCTTTTT GAAA TTTT TTTC TTTTTTTAAAAGCAA TERM 868 808849 - 808831 - G 74 -6.2 -4.36411 | opp_overlap 808831 CAGTAAGCATTAAAA TATAAAAA TCA TTTTTATA TTTTTCTATAAATTT TERM 869 808831 - 808849 + g 81 -6.2 -5.01546 | opp_overlap 808831 CAGTAAGCATTAAAA TATAAAAA TCA TTTTTATA TTTTTCTATAAATTT CJJ81176_0879 810017 - 808953 - | phage integrase family site specific recombinase TERM 870 810094 - 810109 + H 74 -4.8 -5.01422 | opp_overlap 810094 CTTAGTAAAAAAAAG CTTTTT TAGG AAAAAG TTTGTTTTTATATGC TERM 871 810623 - 810611 - H 77 -4.9 -5.17507 | overlap 810601 AAAACTTAATAAAAA GTTTT ATC AAAAC CAAATTTCAAGGAGA dsbA 810644 - 811306 + | thiol:disulfide interchange protein DsbA TERM 872 811900 - 811914 + G 79 -5 -5.25799 | ATAAATATGGCAATT TGCTGT CTT ATAGCA TTTTTATGTTGTTTT dsbB 811318 - 812112 + | putative disulfide oxidoreductase TERM 873 812107 - 812150 + F 73 -5.7 -4.66987 | gap 1, opp_overlap 812115, overlap 812115 GTCGTTTTAAGATAC TCTTAA-AATACGCAACAAA TTATT TTTGTTGTGTATTATTAAAA TTTTATTAAGCTATC TERM 874 812115 - 812141 + F 81 -8.9 -3.73709 | opp_overlap 812115, overlap 812107 AAGATACTCTTAAAA TACGCAACAAA TTATT TTTGTTGTGTA TTATTAAAATTTTAT TERM 875 812141 - 812115 - f 73 -6.7 -4.1413 | opp_overlap 812107 812115 AAGATACTCTTAAAA TACGCAACAAA TTATT TTTGTTGTGTA TTATTAAAATTTTAT TERM 876 813465 - 813452 - g 76 -2.5 -5.60993 | GTCGTGATAAAAAAA TAAAA TGGA TTTTA GGGGCACATAAAGGA CJJ81176_0882 812200 - 814062 + | arylsulfate sulfotransferase, degenerate TERM 877 814062 - 814095 + F 100 -5.4 -5.81412 | opp_overlap 814060 814063 814066, overlap 814066 814092 CAATCCTAAAAAATA ACAATAAGCCCAAA AATAAA TTTGGGCTTATTTA TTTTTTTTAAATAAA TERM 878 814094 - 814063 - f 91 -8.9 -4.63993 | opp_overlap 814062 814066 814092, overlap 814060 814066 AATCCTAAAAAATAA CAATAAGCCCAAA AATAAA TTTGGGCTTATTT ATTTTTTTTAAATAA TERM 879 814091 - 814066 - f 93 -10.6 -4.40692 | opp_overlap 814062 814066, overlap 814063 814060 CCTAAAAAATAACAA TAAGCCCAAA AATAAA TTTGGGCTTA TTTATTTTTTTTAAA TERM 880 814066 - 814091 + F 100 -10.6 -5.33985 | opp_overlap 814066 814063 814060, overlap 814062 CCTAAAAAATAACAA TAAGCCCAAA AATAAA TTTGGGCTTA TTTATTTTTTTTAAA CJJ81176_0883 814118 - 814789 + | thiol:disulfide interchange protein DsbA, putative TERM 881 814792 - 814825 + T 90 -6.9 -5.2112 | opp_overlap 814794 814795, overlap 814795 TAATATGAAATAATA AATTTTTAAGGCAAT AAAA ATTGCCTTAAAATTA TTTTTTGATCATATT TERM 882 814823 - 814794 - T 95 -9.5 -4.61162 | opp_overlap 814792 814795, overlap 814795 ATATGAAATAATAAA TTTTTAAGGCAAT AAAA ATTGCCTTAAAAT TATTTTTTGATCATA TERM 883 814822 - 814795 - T 100 -13 -3.35071 | opp_overlap 814792 814795, overlap 814794 TATGAAATAATAAAT TTTTAAGGCAAT AAAA ATTGCCTTAAAA TTATTTTTTGATCAT TERM 884 814795 - 814822 + T 100 -13 -4.68456 | opp_overlap 814795 814794, overlap 814792 TATGAAATAATAAAT TTTTAAGGCAAT AAAA ATTGCCTTAAAA TTATTTTTTGATCAT CJJ81176_0884 815200 - 814823 - | cytochrome c family protein, degenerate CJJ81176_0885 815809 - 815264 - | cytochrome C CJJ81176_0886 816019 - 816159 + | hypothetical protein CJJ81176_0887 816779 - 816147 - | putative periplasmic protein TERM 885 816209 - 816240 + g 75 -6 -4.69326 | overlap 816210 CTTTAAAAGAAGGCG ATTGGATAAATAGT TTGC ACTCTTTATCCAAA TTTTCTATTCCGTAT TERM 886 816210 - 816239 + g 79 -9.5 -3.40511 | overlap 816209 TTTAAAAGAAGGCGA TTGGATAAATAGT TTGC ACTCTTTATCCAA ATTTTCTATTCCGTA CJJ81176_0888 817018 - 816776 - | hypothetical protein TERM 887 816957 - 816937 - G 100 -9.1 -4.4009 | CTCCAGCGTATAAAA GCATAGCTT CTA AAACTATGC TAAGCTCATATTGTA CJJ81176_0889 818048 - 817002 - | hypothetical protein TERM 888 817997 - 817987 - G 72 -2.6 -5.45802 | TTTTTAAAATAAAAA TTTA CTA TAAA TTGACAAGCATAGCC flhA 820192 - 818057 - | flagellar biosynthesis protein FlhA TERM 889 820095 - 820082 - G 70 -3.8 -5.16151 | opp_overlap 820082 TAAAGCCAAGAAAAA GTCC AAAATA GGAC TTGGTAAAGGAACTA CJJ81176_0891 820628 - 820218 - | RrF2 family protein, putative TERM 890 820514 - 820480 - G 76 -9.6 -2.66106 | opp_overlap 820479 820478 820481, overlap 820476 GATTTTAACAAGCCA TCTTTAGCTAAAGTTT GTA AAATTTTAGCTAAAAA ACTTTTAGGAATATC TERM 891 820870 - 820857 - g 70 -3.8 -5.03747 | AAATTCGCTAAAAAA CCAG GTGATA CTGG TTCAACAGAAGTTCA rpsO 820803 - 821075 + | 30S ribosomal protein S15 CJJ81176_0893 824001 - 821161 - | cell division protein FtsK, putative TERM 892 821693 - 821677 - G 82 -10.9 -2.61264 | opp_overlap 821676 821680, overlap 821676 821680 TTGTGTAGCTACAAT CAAGTGG ATT CCACTTG CTCTTGCCATTTGCG TERM 893 823278 - 823293 + g 77 -9 -3.63991 | TTTTACTAGCCTTTT GTGCGA AATT TCGCAC TTGTTGAGAATGCTC TERM 894 823939 - 823924 - G 72 -4 -5.02357 | TATAAGCAAAGAAAA TGGATA ATAA TACCCA AATTCTCCAAATAAA CJJ81176_0894 826363 - 824111 - | flagellin family protein TERM 895 824174 - 824190 + g 78 -9.5 -3.22409 | opp_overlap 824167, overlap 824168 AAGAGAAGCTTGATA TGCAAGT TGA ACTTGCA TTAAATTCATCATTG TERM 896 826682 - 826666 - R 75 -9.5 -2.62983 | overlap 826669 CTCAGGGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCGA CJJ81176_0897 828676 - 826745 - | ABC transporter, ATP-binding protein TERM 897 827355 - 827345 - G 70 -5.4 -4.65895 | GCTTTTATCTAAAAA TTCC TTA GGAA ATAAAAAATTTTTCA TERM 898 827793 - 827809 + g 89 -9.5 -4.29049 | overlap 827790 TTTTTCGCTTCTTCA CGCATTT TAA AAATGCG TTCTTTTCGTCCTTC TERM 899 828466 - 828477 + g 70 -4.4 -4.89729 | opp_overlap 828466, overlap 828460 CAACGGTTTGTGAAA GCAT GGCT ATGC TTTTTCCATTTTGTC TERM 900 828629 - 828640 + g 74 -3 -5.43866 | TTCATTTAAAACTAT TTTG TCTC CAAA TTTTTTTGAAGCTTC CJJ81176_0898 829969 - 828680 - | sensor histidine kinase TERM 901 829128 - 829167 + g 100 -10.2 -5.25803 | opp_overlap 829126 829140 AAAACAAAATTAAGC TTATGGGTCAAAGCATTA AGTT TAATGCTTTGACGCGAAA TTTTTTCTAGCAATT TERM 902 829310 - 829330 + g 93 -5.5 -6.12458 | AAGCTGAGTATTTTT TAAAGTGAT TTT ATCGCTTTG TTTTTTATTTTTTTG TERM 903 829830 - 829842 + g 76 -2.7 -5.54885 | AATTTTAAAACATCA TCAAG GCT TTTGA TTTTTTGTTCATATT CJJ81176_0899 830625 - 829963 - | DNA-binding response regulator serA 832195 - 830612 - | D-3-phosphoglycerate dehydrogenase CJJ81176_0901 832680 - 832192 - | hypothetical protein rpsA 834350 - 832680 - | 30S ribosomal protein S1 ispH 835315 - 834482 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase aroA 836576 - 835305 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 904 836112 - 836129 + g 82 -7.1 -4.77757 | opp_overlap 836122, overlap 836122 AGCCGAAGAAATTTC GCTTTTA AAAT TAAAAGC TTTTAATTTTTGACC pheT 838909 - 836588 - | phenylalanyl-tRNA synthetase subunit beta TERM 905 836712 - 836694 - G 72 -2.5 -5.45802 | overlap 836695 TCCCTAAAAGAAAAA CTTATAG TAATG CTATAAA ATTCTTTAAGGTTTT TERM 906 837819 - 837835 + g 70 -8.1 -3.18274 | AGCAAAAAATCCATT CCTAAAT TTA ATTTAGG TTCACTTCCCCTAAA pheS 839898 - 838906 - | phenylalanyl-tRNA synthetase subunit alpha CJJ81176_0907 840021 - 840386 + | HIT family protein TERM 907 840384 - 840418 + T 100 -16.1 -4.37886 | opp_overlap 840393 CCTCAAGCTTTATTT TAGTTTAAATGGTAG AAAAA CTACCATTTAAACTA TTTTGTCAAAGGTAG thiJ 840985 - 840416 - | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme CJJ81176_0909 841157 - 840978 - | hypothetical protein CJJ81176_0910 841241 - 841984 + | His/Glu/Gln/Arg/opine amino acid ABC transporter permease TERM 908 842341 - 842325 - g 93 -5.9 -5.66684 | GAAGCCATAAAAAAA GCAAAAA TAC TTCTTGC TAAGGTGGGTTTAGC CJJ81176_0911 841977 - 842705 + | amino acid ABC transporter, ATP-binding protein TERM 909 842706 - 842730 + T 82 -8 -4.25283 | opp_overlap 842706 GTTTTAAATCATTAA TTCATAAGCT ATTAA GGCTTATGAA TTTTAATCCCAACAT CJJ81176_0912 844199 - 842733 - | amino acid carrier protein CJJ81176_0913 844770 - 844303 - | RNA methyltransferase alr 845759 - 844773 - | alanine racemase CJJ81176_0915 846737 - 845760 - | hypothetical protein TERM 910 847000 - 846980 - g 70 -4.1 -4.96845 | overlap 846981 ATAAAAAGAAAGAAA GTGTATTTA GCT TAAATACAT GCCAACCTCTAACTT TERM 911 846999 - 846981 - g 72 -7.6 -3.54447 | overlap 846980 TAAAAAGAAAGAAAG TGTATTTA GCT TAAATACA TGCCAACCTCTAACT CJJ81176_0916 846895 - 847365 + | hypothetical protein CJJ81176_0917 847451 - 847870 + | hypothetical protein TERM 912 848113 - 848073 - g 74 -9.3 -2.82668 | opp_overlap 848081, overlap 848072 848081 848104 CCCTAAATCCCAAAC CCTTACAATCTTTAGATGT TAC AAATCTAAAGATTGTAAAT CTAGGAAATTATAAC CJJ81176_0918 847874 - 848326 + | hypothetical protein TERM 913 848876 - 848854 - g 73 -8.6 -3.15197 | opp_overlap 848846 848848 848858, overlap 848857 CAAGAAATTTTAAGA GAACTTAGAA TTT TTCTAAATTC TCAATAATTATACTT CJJ81176_0919 848323 - 848883 + | SCO1/SenC family protein cysK 849651 - 848890 - | cysteine synthase A TERM 914 849907 - 849889 - R 91 -8.9 -4.72473 | TTAATTAAAAAAGAA GGCTAGA ATTTA TCTAGCC GAAGTTTTATTTTTT hup 850210 - 849914 - | DNA-binding protein HU TERM 915 850292 - 850307 + r 71 -4.8 -4.86216 | AACAGCTTTTTTTAA GTTTTT TTCA AAAAAC TTTATTATTTTTTCT ciaB 852144 - 850312 - | invasion antigen B TERM 916 851138 - 851160 + g 76 -6.4 -4.58563 | overlap 851136 CAAATATAAAGTTGA GTTTTTTCTA TAT TAGATAAAAC TTCTTTTTCTAATTC TERM 917 851622 - 851633 + g 81 -5.8 -5.22312 | TTCGCTCACAAATTT CTCC TTCT GGAG TTTTTTGATATAAAT CJJ81176_0922 852206 - 852619 + | thioesterase family protein CJJ81176_0923 852859 - 852659 - | hypothetical protein TERM 918 852827 - 852804 - G 70 -9 -2.56715 | AGTCCCACCAAGGGA TGAAAAAACC TTTC GGCTTTTTCA TAATAATACTTAAAT cstA 854948 - 852837 - | carbon starvation protein A TERM 919 853977 - 853965 - G 78 -4.1 -5.47159 | GGTAATAAATAAAAA TGGAA ACA CTCCA CCTGCAAATACTGGA TERM 920 855111 - 855079 - R 72 -4.3 -4.94902 | opp_overlap 855085, overlap 855080 855085 TAAGTAGCATAAAAA TGAAAAGCTTAAAAA TAA TCTTTAAGCTTTTTT AATCTAAATAAAGAG TERM 921 855110 - 855080 - R 74 -7.8 -3.55857 | opp_overlap 855085, overlap 855079 855085 AAGTAGCATAAAAAT GAAAAGCTTAAAAA TAA TCTTTAAGCTTTTT TAATCTAAATAAAGA TERM 922 855085 - 855105 + r 81 -5.5 -5.22312 | opp_overlap 855085 855080 855079 GCATAAAAATGAAAA GCTTAAAAA TAA TCTTTAAGC TTTTTTAATCTAAAT TERM 923 855105 - 855085 - R 86 -7.7 -4.82678 | opp_overlap 855085, overlap 855080 855079 GCATAAAAATGAAAA GCTTAAAAA TAA TCTTTAAGC TTTTTTAATCTAAAT prsA 856044 - 855115 - | ribose-phosphate pyrophosphokinase TERM 924 856155 - 856120 - R 87 -10.8 -3.5771 | opp_overlap 856128, overlap 856128 AAAAACTGCTGTAAA TTTAAAAAGCTTATAT AAAA ATATAAGCTTTTTTAA GAAATGTAAGCTGTC TERM 925 856147 - 856128 - R 89 -8 -4.81249 | opp_overlap 856128, overlap 856120 CTGTAAATTTAAAAA GCTTATAT AAAA ATATAAGC TTTTTTAAGAAATGT TERM 926 856128 - 856147 + r 95 -8 -5.02476 | opp_overlap 856128 856120 CTGTAAATTTAAAAA GCTTATAT AAAA ATATAAGC TTTTTTAAGAAATGT CJJ81176_0926 856811 - 856152 - | amino acid ABC transporter, permease protein PEB1 CJJ81176_0927 857574 - 856822 - | amino acid ABC transporter, permease protein PEB1 pebA 858355 - 857576 - | bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein pebC 859105 - 858377 - | amino acid ABC transporter, ATP-binding protein PEB1 cheR 860029 - 859241 - | chemotaxis protein methyltransferase CheR cheB 860599 - 860045 - | protein-glutamate methylesterase CheB rpiB 860765 - 861202 + | ribose 5-phosphate isomerase B CJJ81176_1732 861202 - 861534 + | hypothetical protein apt 861531 - 862079 + | adenine phosphoribosyltransferase CJJ81176_0935 862098 - 862694 + | DedA family protein CJJ81176_0936 862691 - 864142 + | leucyl aminopeptidase CJJ81176_0937 864139 - 865242 + | translation-associated GTPase argH 866646 - 865264 - | argininosuccinate lyase TERM 927 866162 - 866150 - G 83 -3.4 -5.71295 | opp_overlap 866154, overlap 866154 ATATAAAAAGAAAAA CTCA CAGGC TGAG CGTGTTGTAAATGTG pckA 868230 - 866656 - | phosphoenolpyruvate carboxykinase CJJ81176_0940 870042 - 868243 - | oxaloacetate decarboxylase, alpha subunit, putative TERM 928 870105 - 870086 - R 72 -4.4 -5.01497 | opp_overlap 870086 ATTATTATACAAAAA TTTGATAA CACA TTACCAAA ATTATTGCTATAGGC CJJ81176_0941 871415 - 870075 - | sodium transporter, putative TERM 929 870170 - 870197 + g 74 -2.2 -5.5112 | AAATTTTTCTACTTA TAAATTTAGAAA AAAT TTTATAAATTTG TTTTTTATTCATAAA TERM 930 870309 - 870295 - G 80 -2.2 -5.77856 | overlap 870297 AATAAAGTAAAAAAA TCTTTT CCA AAAAAA CTAAACATAGAAAAA TERM 931 871169 - 871191 + g 72 -7.8 -3.66095 | CACCATATCGCCATC TATTGCCATA TTT TATGGCAAGA TTTGAATAAGCATTT CJJ81176_0942 872762 - 871428 - | sodium transporter, putative atpE 872996 - 873334 + | F0F1 ATP synthase subunit C TERM 932 873346 - 873360 + F 78 -4.2 -5.37043 | opp_overlap 873346 ATAAAACTTATTAAA GCCC TTTTTTT GGGC TTTTTTCTATGCGGT TERM 933 873590 - 873633 + F 100 -12.9 -3.17571 | AATTTTTCCCTAACT TTTCTCCTAACTTTTTA TTTTTTGTTT TAAAAAGTTAGGAGAAA TTAGCTTAAGGAGTT TERM 934 874194 - 874167 - g 100 -9.8 -5.55769 | opp_overlap 874166 874165 CGCTATAATAAAAAA TCCGCCTTGAGT TTTC ACTCTTGGCGGA AATTTAGCAATCAAG CJJ81176_0945 874059 - 874214 + | hypothetical protein TERM 935 874393 - 874382 - f 78 -3 -5.67283 | overlap 874388 AAGTCAAATAAAAAA GAAA TCCG TTTC AAAACGCAGCTCAAT TERM 936 874514 - 874498 - f 70 -3.7 -5.12068 | overlap 874499 GATACTTAATAAAAA GTGTGTA TAA TACATAC TCATAAGGATATTAT CJJ81176_0946 874531 - 874758 + | hypothetical protein CJJ81176_0947 874762 - 875121 + | hypothetical protein TERM 937 875158 - 875147 - T 82 -3 -5.96894 | AGTTAAATAAAAAAA GAAA TCCG TTTC AAACCACTAAAAAAT CJJ81176_0948 875584 - 875453 - | hypothetical protein TERM 938 875603 - 875582 - G 95 -11.7 -3.57462 | opp_overlap 875582 875587, overlap 875587 TATTTTATCTTTAAA CAAAAGGCT ATAA AGCCTTTTG TTTAAATAGAAGGAG TERM 939 875582 - 875603 + g 95 -11.7 -3.64703 | opp_overlap 875582 875587, overlap 875587 TATTTTATCTTTAAA CAAAAGGCT ATAA AGCCTTTTG TTTAAATAGAAGGAG TERM 940 875587 - 875598 + r 77 -5.8 -4.90778 | opp_overlap 875582 875587, overlap 875582 TATCTTTAAACAAAA GGCT ATAA AGCC TTTTGTTTAAATAGA TERM 941 875598 - 875587 - R 77 -5.8 -4.87803 | opp_overlap 875587 875582, overlap 875582 TATCTTTAAACAAAA GGCT ATAA AGCC TTTTGTTTAAATAGA CJJ81176_0949 876473 - 875589 - | hypothetical protein TERM 942 876105 - 876136 + g 73 -6 -4.66609 | gap 1 TTGAATACCTTGTTC TGTTTGGGTATAGCT TTG AGC-ATATCCAACCA TTTTTGAATAAGCTG TERM 943 876374 - 876346 - G 74 -6.7 -4.24123 | opp_overlap 876347 876348 876355, overlap 876347 CCAAGAACGCTAAAA CCTGCATGAGCAG AAG CTGCTAATGCAAT TTCCGCCTTTTCTTC TERM 944 876347 - 876373 + g 72 -8 -3.6834 | opp_overlap 876347 876346, overlap 876348 876355 CAAGAACGCTAAAAC CTGCATGAGCAG AAG CTGCTAATGCAA TTTCCGCCTTTTCTT TERM 945 876373 - 876347 - G 81 -10.2 -3.13751 | opp_overlap 876347 876348 876355, overlap 876346 CAAGAACGCTAAAAC CTGCATGAGCAG AAG CTGCTAATGCAA TTTCCGCCTTTTCTT TERM 946 876348 - 876372 + g 85 -11.5 -2.79919 | opp_overlap 876347 876346, overlap 876347 876355 AAGAACGCTAAAACC TGCATGAGCAG AAG CTGCTAATGCA ATTTCCGCCTTTTCT CJJ81176_0950 877011 - 876487 - | hypothetical protein CJJ81176_0951 877148 - 877026 - | hypothetical protein CJJ81176_0952 878312 - 877197 - | hypothetical protein TERM 947 878376 - 878398 + r 83 -9.8 -3.68244 | opp_overlap 878376 878380, overlap 878382 GGTATAATTATAAAA GGTAGATGCC AAA GGCGGCTACC TTTGGCATTAATCAT TERM 948 878398 - 878376 - R 81 -7.6 -4.58466 | opp_overlap 878376 878382, overlap 878380 GGTATAATTATAAAA GGTAGATGCC AAA GGCGGCTACC TTTGGCATTAATCAT TERM 949 878407 - 878380 - R 73 -9.2 -2.82606 | opp_overlap 878376 878382 878406, overlap 878376 TAATTATAAAAGGTA GATGCCAAAGGC GGCT ACCTTTGGCATT AATCATAACCTAGAA TERM 950 878382 - 878405 + r 86 -11.1 -3.21747 | opp_overlap 878376 878380, overlap 878376 ATTATAAAAGGTAGA TGCCAAAGG CGGCTA CCTTTGGCA TTAATCATAACCTAG TERM 951 878502 - 878517 + r 87 -10.4 -3.54543 | overlap 878515 GGCTTATTGAGTATC CCCTGC TTTT GCAGGG TTTAGAACAATCCCT CJJ81176_0953 879048 - 878596 - | hypothetical protein TERM 952 879265 - 879227 - H 77 -4.8 -5.093 | GTGAAAATAAGAAAA GCAATAAGATAAACTT TCAAAAT AAATCTGTCTTATTGC GTGAATATTAAAAAT TERM 953 879560 - 879533 - H 79 -5.8 -5.00616 | opp_overlap 879521 879552, overlap 879518 GGTTTTTTTAAAAAA CTTAAAAAATAT TAAG ATTTTTTTTAAG TATAAAGAATATAAT TERM 954 879826 - 879841 + G 76 -2.6 -5.6473 | gap 1 TTATTGGATTGTTTA GCTG-TA TAC TAGCAGC TTTTTTTGCTATTCT TERM 955 880296 - 880312 + G 72 -8.1 -3.37944 | GTAATTGTCATCTTT GCTAAAA TGA TTTTAGC TCCTTTATTTTTTGT CJJ81176_0954 879618 - 880529 + | hypothetical protein aas 884049 - 880537 - | 2-acyl-glycerophospho-ethanolamine acyltransferase TERM 956 881708 - 881720 + g 77 -4.9 -5.2696 | opp_overlap 881706 ACTGCTAACATCATG CTAAA AAT TTTAG TTTTTTGCATTTTAA CJJ81176_0956 884474 - 884094 - | hypothetical protein TERM 957 884233 - 884249 + g 82 -5.1 -5.37345 | AATTCTGCAACCTTA CTAGCAA ATT TTGCAAG TTTTTTATCATTACA CJJ81176_0964 886059 - 885274 - | His/Glu/Gln/Arg/opine ABC transporter permease CJJ81176_0965 887287 - 886082 - | permease, putative TERM 958 886567 - 886581 + g 72 -4.4 -5.03715 | CAGCATAATCGTCTT TTAAAT AAG ATTTAA TTTTTTCAACATCCT TERM 959 887244 - 887215 - G 70 -5.9 -4.20797 | gap 1, opp_overlap 887215 887217, overlap 887217 TCAAAAGCATAGAAA GAT-TGATAAAGGG TTG CTCTTTATCAAATC TTAAATATTTAAAAA TERM 960 887215 - 887244 + g 72 -8.1 -3.24021 | gap 1, opp_overlap 887215 887217, overlap 887217 TCAAAAGCATAGAAA GATT-GATAAAGGG TTG CTCTTTATCAAATC TTAAATATTTAAAAA TERM 961 887217 - 887241 + g 82 -10.9 -2.50438 | opp_overlap 887215 887217, overlap 887215 AAAAGCATAGAAAGA TTGATAAAGGG TTG CTCTTTATCAA ATCTTAAATATTTAA TERM 962 887241 - 887217 - G 77 -8.7 -3.68627 | opp_overlap 887217 887215, overlap 887215 AAAAGCATAGAAAGA TTGATAAAGGG TTG CTCTTTATCAA ATCTTAAATATTTAA secA 889872 - 887284 - | preprotein translocase subunit SecA TERM 963 889274 - 889290 + g 71 -6.7 -3.97088 | overlap 889267 889285 TGCTCTCTTTGAACT TTTTCAA CTT TTGAAAA TTTCATATTATCACG lolA 889987 - 890481 + | outer-membrane lipoprotein carrier protein CJJ81176_0968 891212 - 890478 - | hypothetical protein TERM 964 891209 - 891229 + g 73 -5.6 -4.58859 | TTAAAAATATTTTTT TCATTTAA TGCCT TTAAATGA TTTGTTCTTGTATTT CJJ81176_0969 892565 - 891222 - | hypothetical protein TERM 965 892399 - 892380 - G 87 -3.5 -5.95539 | overlap 892397 CCCTAAACAAAAAAA GCTGTGT AAAGTA ACACCGC CTATATTAAACGCCG TERM 966 893394 - 893375 - g 84 -6.6 -5.23765 | opp_overlap 893374 893375 CAAAGAAGATAAAAA CTATTTTT ATGG AAAAATAG GTTCTAAAAAATATA TERM 967 893667 - 893655 - g 81 -2.7 -5.77853 | AATTCTCAAAAAAAA GATTT TTT AAACC GCTTTGGGAAAGCTT CJJ81176_0970 892614 - 893960 + | putative lipoprotein TERM 968 893988 - 893958 - T 100 -10 -4.87008 | opp_overlap 893961, overlap 893961 AATATACAAAACAAA TAAGATTTATTGAT TTA ATCAATAAATCTTT TAGTTAAATCTGTAA TERM 969 893985 - 893961 - T 100 -11.7 -4.49673 | opp_overlap 893961, overlap 893958 ATACAAAACAAATAA GATTTATTGAT TTA ATCAATAAATC TTTTAGTTAAATCTG TERM 970 893961 - 893985 + T 100 -11.7 -4.44548 | opp_overlap 893961 893958 ATACAAAACAAATAA GATTTATTGAT TTA ATCAATAAATC TTTTAGTTAAATCTG CJJ81176_0971 894844 - 893972 - | carbon-nitrogen family hydrolase TERM 971 894485 - 894473 - G 70 -3.5 -5.14626 | AGGAGTAAAATAAAA TTTTT CAT AAAAA CAAGGATCATCGGGT CJJ81176_0972 895728 - 894841 - | cation efflux family protein TERM 972 895122 - 895151 + g 88 -9.5 -4.07568 | opp_overlap 895139, overlap 895123 895125 TAGGTAAAGCCTCAT CCATTAAAAAAGC TAAA GCTTTTTTAATGA TTTTAAAAGCAGAAA TERM 973 895123 - 895150 + g 100 -13 -3.04398 | opp_overlap 895139, overlap 895122 895125 AGGTAAAGCCTCATC CATTAAAAAAGC TAAA GCTTTTTTAATG ATTTTAAAAGCAGAA TERM 974 895125 - 895148 + g 78 -9.8 -3.08032 | opp_overlap 895139, overlap 895123 895122 GTAAAGCCTCATCCA TTAAAAAAGC TAAA GCTTTTTTAA TGATTTTAAAAGCAG TERM 975 895697 - 895710 + g 80 -2.3 -5.75945 | opp_overlap 895694 ATAGCACATAAACTT GCTAC AAGA GTTGC TTTTTTTTGCAAACT CJJ81176_0973 896702 - 895725 - | peptidyl-arginine deiminase family protein TERM 976 895850 - 895860 + g 72 -4 -5.01535 | AAAGTCTTTTAGCTA TGAT TTC ATCA TTTTTATCCTTGTAA TERM 977 896774 - 896791 + r 89 -11.3 -3.59649 | opp_overlap 896767 896773 896772 AAATTTAAGAAGATT GCCTCGA TATT TCGAGGC TTTAGGGCATTATTT CJJ81176_0974 897235 - 896801 - | putative lipoprotein CJJ81176_0975 898837 - 897245 - | membrane protein, putative, degenerate TERM 978 898843 - 898869 + r 76 -8.2 -3.6581 | opp_overlap 898842 898854, overlap 898840 TTTTAAACATCATAG TTTCCTAAAAAT AAA ATTTTTCGGAAA TATTTTACACATAAT purH 900468 - 898936 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 979 899846 - 899856 + g 70 -4 -4.93898 | overlap 899843 TTTTCTCCATATTTT GTAT CAA ATAC TTTTTGTCCTACTAT CJJ81176_0977 901109 - 900471 - | DnaJ domain-containing protein TERM 980 900578 - 900590 + g 72 -2.7 -5.41746 | TGTTTGCATTTAAAA TATCA GGA TGGTA TTTTTTTGCCAAATT purL 903424 - 901238 - | phosphoribosylformylglycinamidine synthase II trmE 904763 - 903435 - | tRNA modification GTPase TrmE CJJ81176_0980 905574 - 904756 - | hypothetical protein TERM 981 904991 - 904978 - G 70 -5.3 -4.58395 | TTGATTTTCTAAAAA TTGAG CGAT CTCAA GGCGCACTAAAAGAT TERM 982 905393 - 905411 + g 95 -6.1 -6.02546 | GTAAATTCTTTTTTA GGATTTT TTTTC AAAATCC TTTTTTTTGCTTTAG TERM 983 905579 - 905591 + r 78 -3.3 -5.70829 | TCGATTTTCATTTTT CATGC TCC GCTTG TTTTTTTGTGATGTT CJJ81176_0981 907164 - 905578 - | putative inner membrane protein translocase component YidC TERM 984 906641 - 906667 + g 70 -6 -4.22948 | opp_overlap 906641 GGATAAAAAGTAATA TCTTTTTCGATT TTC AATCCAGAAAGA TTTTGAGTGAGTTTT TERM 985 906731 - 906716 - G 70 -6.2 -4.06182 | overlap 906714 TCATCGACAAAAAGA TTGCTA GCGT TAGCAA CATAAGGAATTTTAA TERM 986 906884 - 906872 - G 75 -4.1 -5.27335 | TCTTTCAAATAAAAA GCAGA AAT TCTAC CAAAAGAGTCAATTT CJJ81176_0982 907502 - 907161 - | hypothetical protein rnpA 907825 - 907499 - | ribonuclease P protein component TERM 987 907693 - 907707 + g 93 -4.3 -6.15828 | TTCCAACTTTTTTAC TAGCA ACAAC TGCTA TTTTTTTTTCATAAC rpmH 907956 - 907822 - | 50S ribosomal protein L34 CJJ81176_0985 908087 - 908566 + | acetyltransferase CJJ81176_0986 908593 - 909171 + | hypothetical protein TERM 988 909188 - 909178 - f 71 -2.6 -5.52384 | opp_overlap 909178 909172 909169 TTTTTATGAAAAAAA TATT TTT AATA TTTTTCTTATCTTGC CJJ81176_0987 909207 - 910358 + | hypothetical protein TERM 989 910338 - 910370 + T 74 -7.9 -3.65214 | opp_overlap 910335 910339 910340, overlap 910339 910339 CAAGGCAAACAAGCA AGCTTTGAAGAATTA AAA TAATTCTTCAAAGAG CTTTTTTAACTGCGT TERM 990 910339 - 910369 + T 84 -11.4 -2.78405 | opp_overlap 910335 910339 910340, overlap 910338 910339 AAGGCAAACAAGCAA GCTTTGAAGAATTA AAA TAATTCTTCAAAGA GCTTTTTTAACTGCG TERM 991 910339 - 910371 + T 81 -5.2 -5.09895 | gap 2, opp_overlap 910335 910339 910340, overlap 910339 910338 AAGGCAAACAAGCAA GCT-TT-GAAGAATTA AAA TAATTCTTCAAAGAGC TTTTTTAACTGCGTA TERM 992 910369 - 910339 - T 89 -11.4 -3.63326 | opp_overlap 910339 910338 910339, overlap 910335 910340 AAGGCAAACAAGCAA GCTTTGAAGAATTA AAA TAATTCTTCAAAGA GCTTTTTTAACTGCG TERM 993 910368 - 910340 - T 100 -14.9 -2.76911 | opp_overlap 910339 910338 910339, overlap 910339 910335 AGGCAAACAAGCAAG CTTTGAAGAATTA AAA TAATTCTTCAAAG AGCTTTTTTAACTGC CJJ81176_0988 910724 - 910350 - | thioesterase family protein CJJ81176_0990 911259 - 911441 + | putative periplasmic protein CJJ81176_0991 911443 - 911598 + | putative periplasmic protein TERM 994 911929 - 911917 - g 77 -4.9 -5.22104 | TAAAAAACAATAAAA TCTTT ATC AAAGA TGCTAATATGATTAT CJJ81176_0992 911595 - 912038 + | putative periplasmic protein CJJ81176_0993 912068 - 912184 + | putative periplasmic protein TERM 995 912875 - 912863 - g 71 -4.9 -4.77165 | opp_overlap 912863 912867, overlap 912867 CTGCTTATAATAAAA TCATT ATC AATGA TACTTTATTTGGTGT CJJ81176_1741 912229 - 913098 + | putative periplasmic protein CJJ81176_1742 913484 - 913612 + | hypothetical protein TERM 996 913640 - 913614 - f 77 -5.2 -4.91778 | opp_overlap 913615 913617 913635 913638, overlap 913615 913617 913630 913632 913635 913638 CAAAGATAAAATAAA TCATTCCTATCT TAA AGATAGGAATCT TTTGCTTGTATTTTT TERM 997 913615 - 913639 + F 90 -8.7 -4.6008 | opp_overlap 913614 913615 913617 913630 913632 913635 913638, overlap 913617 913635 913638 AAAGATAAAATAAAT CATTCCTATCT TAA AGATAGGAATC TTTTGCTTGTATTTT TERM 998 913639 - 913615 - f 77 -8.7 -3.52627 | opp_overlap 913615 913617 913635 913638, overlap 913614 913617 913630 913632 913635 913638 AAAGATAAAATAAAT CATTCCTATCT TAA AGATAGGAATC TTTTGCTTGTATTTT TERM 999 913617 - 913637 + F 95 -11.3 -3.87807 | opp_overlap 913615 913614 913617 913630 913632 913635, overlap 913615 913635 AGATAAAATAAATCA TTCCTATCT TAA AGATAGGAA TCTTTTGCTTGTATT TERM 1000 913637 - 913617 - f 87 -11.3 -3.29782 | opp_overlap 913617 913615 913635, overlap 913615 913614 913630 913632 913635 AGATAAAATAAATCA TTCCTATCT TAA AGATAGGAA TCTTTTGCTTGTATT TERM 1001 913679 - 913632 - f 87 -11 -3.38046 | opp_overlap 913617 913615 913635 913638 913677, overlap 913617 913615 913614 913630 913635 913638 913672 TTCCTATCTTAAAGA TAGGAATCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGATTCTTA AATCTTAATCTTACA TERM 1002 913676 - 913635 - f 95 -12.7 -2.55297 | opp_overlap 913617 913615 913635 913638, overlap 913617 913615 913614 913632 913630 913638 913672 CTATCTTAAAGATAG GAATCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGATTC TTAAATCTTAATCTT TERM 1003 913635 - 913676 + F 100 -12.7 -3.21464 | opp_overlap 913617 913615 913614 913632 913630 913635 913638 913672, overlap 913617 913615 913638 CTATCTTAAAGATAG GAATCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGATTC TTAAATCTTAATCTT TERM 1004 913673 - 913638 - f 75 -8.6 -3.42257 | opp_overlap 913615 913638 913635, overlap 913615 913614 913635 913632 913630 913672 TCTTAAAGATAGGAA TCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGA TTCTTAAATCTTAAT TERM 1005 913638 - 913673 + F 79 -8.6 -3.73872 | opp_overlap 913615 913614 913635 913632 913630 913638 913672, overlap 913615 913635 TCTTAAAGATAGGAA TCTTTTGCTTGTATTT TTAT AAATATAAACAAAAGA TTCTTAAATCTTAAT CJJ81176_1743 913709 - 915370 + | putative periplasmic protein TERM 1006 915377 - 915401 + F 91 -12.3 -3.40498 | opp_overlap 915376 915377, overlap 915375 915384 TCAAGATGATTAAAC TCCAAAAGGTT AAA AGCCTTTTGGA TCTTGTTAAAAATTA TERM 1007 915401 - 915377 - f 79 -10.1 -2.90307 | opp_overlap 915377 915375 915384, overlap 915376 TCAAGATGATTAAAC TCCAAAAGGTT AAA AGCCTTTTGGA TCTTGTTAAAAATTA TERM 1008 915444 - 915432 - f 73 -3.5 -5.28281 | overlap 915438 ATAAAACAAACAAAA TTTAA AGA TTAAA AATCAAACAAACACT TERM 1009 915942 - 915932 - g 75 -4 -5.33785 | AACGATTACAAAAAA GAAA GTA TTTC AGTTCAAGACTTACA TERM 1010 916063 - 916073 + G 74 -6.8 -4.20531 | opp_overlap 916062 916063 AATTCAAATCAATAT CACC TTA GGTG TTTTAGGTAAATATG CJJ81176_1744 915632 - 917287 + | hypothetical protein TERM 1011 917380 - 917350 - f 85 -8.5 -4.39426 | opp_overlap 917343 TATATTGCCATAAAA GCTTTTAATGTTA TAATT TAGCATTAAAAGC AAATGTCAAGGATAA CJJ81176_0995 917398 - 918273 + | methyltransferase, putative CJJ81176_0996 918346 - 918924 + | hypothetical protein CJJ81176_0997 919098 - 918925 - | putative lipoprotein CJJ81176_0998 919634 - 919107 - | thermonuclease family protein TERM 1012 919954 - 919938 - g 72 -5.1 -4.71828 | overlap 919951 AGTTTATGAAGAAAA TGGCTTT TTA AGAGCCA AAAATTCAAGTCTTG pepD 919702 - 920970 + | aminoacyl-histidine dipeptidase cjaB 922200 - 920953 - | CjaB protein TERM 1013 921506 - 921518 + g 76 -6.3 -4.62471 | opp_overlap 921504 921506 AAACAAACAAGCATA CTCAT TTT ATGAG TTTTTAAAGCTTCAA TERM 1014 921540 - 921556 + g 78 -6.7 -4.67641 | opp_overlap 921539 AAGCTTCAAACAATG GAAAATT TAA AATTTTC TTTTCATTTTGAACT TERM 1015 921652 - 921634 - G 75 -4.6 -5.15117 | TAAAATTCCAAAAAA TCCTCCTA TGA TAAAAGGA ATTCTCCAAGCATAG TERM 1016 922219 - 922239 + r 80 -9.8 -3.45031 | opp_overlap 922218 922219 922223, overlap 922223 TTATCCTAAATCAAC TAAAGGGC AAAAA GCCCTTTA TTAAATTTTTCCACC TERM 1017 922239 - 922219 - R 75 -9.8 -2.71497 | opp_overlap 922219 922223, overlap 922218 922223 TTATCCTAAATCAAC TAAAGGGC AAAAA GCCCTTTA TTAAATTTTTCCACC TERM 1018 922235 - 922223 - R 70 -6.2 -4.04394 | opp_overlap 922223 922219, overlap 922219 922218 CCTAAATCAACTAAA GGGC AAAAA GCCC TTTATTAAATTTTTC TERM 1019 922223 - 922235 + r 72 -6.2 -4.35017 | opp_overlap 922219 922218 922223, overlap 922219 CCTAAATCAACTAAA GGGC AAAAA GCCC TTTATTAAATTTTTC cjaA 923079 - 922240 - | CjaA protein jlpA 923299 - 924417 + | surface-exposed lipoprotein TERM 1020 924479 - 924445 - f 77 -6 -4.7657 | gap 1, opp_overlap 924445, overlap 924436 TAAAAACTTCAAAAA CATTAAAAGCAA-GA TTAAAT TCTTTGCTCTTAATG TTTTCATAATATTAA CJJ81176_1003 924509 - 925249 + | hypothetical protein hipO 926404 - 925253 - | hippurate hydrolase TERM 1021 925926 - 925914 - G 79 -7.7 -4.32034 | TTATCACTACCAAAA GGCAT ATT ATGCC ATCCAAAAACATAAT TERM 1022 926126 - 926144 + g 71 -6.8 -4.02253 | CATTACATTTTCTTT TTTGCTTT TAT AAGGCAAA TTTGTGCATTCTTGC CJJ81176_1005 926981 - 926406 - | hypothetical protein TERM 1023 926523 - 926495 - G 100 -9.7 -4.59653 | opp_overlap 926500, overlap 926500 926512 AAGCAAAAATATAAA CAAAACCCAAAGT AAA ACTATGGGTTTTA TCAACACTCCAAGAT TERM 1024 926500 - 926518 + g 79 -7.4 -4.37886 | opp_overlap 926500 926495 926512 AAAATATAAACAAAA CCCAAAGT AAA ACTATGGG TTTTATCAACACTCC TERM 1025 926518 - 926500 - G 86 -7.4 -5.15682 | opp_overlap 926500, overlap 926495 926512 AAAATATAAACAAAA CCCAAAGT AAA ACTATGGG TTTTATCAACACTCC CJJ81176_1006 927625 - 927215 - | hypothetical protein TERM 1026 927701 - 927711 + H 78 -2.6 -5.82281 | CTTTAATTATTTTTT TAAT TTA ATTA TTTTTTTATATATTT CJJ81176_1007 927859 - 928065 + | hypothetical protein CJJ81176_1008 928829 - 928068 - | hypothetical protein CJJ81176_1009 930091 - 928826 - | iron-sulfur cluster-binding domain-containing protein TERM 1027 929450 - 929435 - G 76 -5.4 -5.03715 | ATCACCCGTAAAAAA TTGCGG CGCT CCACAA CACACTTGTTCTTTC hemN 931448 - 930093 - | coproporphyrinogen III oxidase CJJ81176_1011 931926 - 931435 - | hypothetical protein argF 932843 - 931923 - | ornithine carbamoyltransferase hemB 933823 - 932840 - | delta-aminolevulinic acid dehydratase TERM 1028 934245 - 934219 - g 75 -7.4 -4.11623 | overlap 934209 TACGATTAAAGCAAA TCATCAGCTT GGCTTTA AAGCCGATGA GAGAACTTATGAAAT ribA 933881 - 934441 + | GTP cyclohydrolase II gidB 934442 - 935008 + | methyltransferase GidB TERM 1029 935005 - 935020 + T 100 -9 -5.22006 | opp_overlap 935005 ATATTGTATTTTAAA GTAGCC CTAA GGCTAC TTTTTATTCTGCTAA TERM 1030 935020 - 935005 - T 79 -9 -3.60805 | opp_overlap 935005 ATATTGTATTTTAAA GTAGCC CTAA GGCTAC TTTTTATTCTGCTAA CJJ81176_1016 935596 - 935024 - | hypothetical protein TERM 1031 935197 - 935208 + g 82 -4.4 -5.64274 | opp_overlap 935197 TGGTATAAGTTAAAG GTAC AATA GTAC TTTTTTTATCCATAG TERM 1032 935681 - 935665 - R 72 -3.1 -5.28831 | overlap 935675 ATTAATAAAATAAAA TTTTCTA AAA TAAAAAA TAATTTTTATTACCA CJJ81176_1017 936788 - 935691 - | hypothetical protein TERM 1033 936653 - 936643 - G 76 -6.8 -4.37502 | ACGATGATAGCAAAA GCAG TCG CTGC TAAATGAGTGGTATC TERM 1034 936862 - 936872 + H 81 -2.6 -6.11243 | opp_overlap 936851, overlap 936851 TATATTATTCTAATT TTTA TAA TAAA TTTTTTTTATTAAAT TERM 1035 937661 - 937648 - g 70 -3.9 -5.07941 | AAAAGCATAGAAAAA GAATT AAAA AATTC AACACTTTATGAAAT CJJ81176_1018 936901 - 937782 + | LysR family transcriptional regulator rpoD 937862 - 939730 + | RNA polymerase sigma factor RpoD sixA 940257 - 939745 - | phosphohistidine phosphatase SixA CJJ81176_1021 940772 - 940254 - | rhomboid family protein TERM 1036 940513 - 940502 - G 78 -4.4 -5.46276 | AATACACATAAAAAA CACT TAAA AGTG AACACAACAATCCGC CJJ81176_1022 940870 - 941286 + | hypothetical protein CJJ81176_1023 942910 - 941294 - | cell division protein FtsH, putative CJJ81176_1024 944164 - 942914 - | MiaB-like tRNA modifying enzyme TERM 1037 943074 - 943088 + g 95 -7.2 -5.86965 | opp_overlap 943073 TTTTCTACCAAAACT TCAAGT GAA ACTTGA TTTTTTTTCCTAAAT TERM 1038 944139 - 944152 + g 73 -3.9 -5.31519 | opp_overlap 944139 GTGCGACACCCAAAG GTTTT AAAA AAAAC TTTTTCTTTCAATCT TERM 1039 944178 - 944199 + r 72 -8.9 -2.63549 | overlap 944176 944177 944180 AATCTTTATTCCTTG CATGAAAAT GCAT ATTTTCATG ATGTTGTTCAAAATG CJJ81176_1025 945732 - 944161 - | mechanosensitive ion channel family protein TERM 1040 944944 - 944931 - G 72 -2.5 -5.4593 | opp_overlap 944936 944942, overlap 944936 GCAAAATAAGAAAAA TAATA TTTA TATTA ATAAAATTAATAATC TERM 1041 945051 - 945026 - G 73 -5.5 -4.6821 | AATTTCAACATAAAA GCTATAGCTAT AACA ATAACAATAGC AACAAGTATATTTAC TERM 1042 945197 - 945213 + g 76 -9.5 -3.17325 | overlap 945200 TCCAACTTTTTATCC GAAGCTT TTA AAGCTTC TATATTCTCAACACT aroB 946784 - 945729 - | 3-dehydroquinate synthase CJJ81176_1027 948230 - 946830 - | TrkA domain-containing protein TERM 1043 948193 - 948169 - G 91 -10.1 -4.08064 | opp_overlap 948173, overlap 948156 948173 AAGCCTTTTTCAAAA CAAAGCCTTTC TAA GAAATGCTTTG CTAAAATACCGTCTA TERM 1044 948189 - 948173 - G 70 -5.1 -4.64861 | opp_overlap 948173, overlap 948156 948169 CTTTTTCAAAACAAA GCCTTTC TAA GAAATGC TTTGCTAAAATACCG tgt 948260 - 949381 + | queuine tRNA-ribosyltransferase TERM 1045 949542 - 949530 - g 70 -6.3 -4.11869 | opp_overlap 949529 GAAAAAATTTATAAA CTTCA AAA TGAAG AATTTAAGCTTTCTA CJJ81176_1029 949383 - 950150 + | hypothetical protein TERM 1046 950170 - 950143 - T 100 -9.4 -5.08015 | opp_overlap 950148 950151, overlap 950148 AAGCTAAAAAACAAA CAAAATAAGCAA AATT TTGCTTATTTTA AGAATATTTATATAT TERM 1047 950148 - 950165 + T 73 -7.1 -4.15543 | opp_overlap 950148 950143, overlap 950151 AAAAAACAAACAAAA TAAGCAA AATT TTGCTTA TTTTAAGAATATTTA TERM 1048 950165 - 950148 - T 95 -7.1 -5.3472 | opp_overlap 950148 950151, overlap 950143 AAAAAACAAACAAAA TAAGCAA AATT TTGCTTA TTTTAAGAATATTTA CJJ81176_1031 950746 - 950282 - | hypothetical protein TERM 1049 950430 - 950447 + g 76 -2.7 -5.5604 | opp_overlap 950430, overlap 950423 TTTGCAGCCAAAGCA GAAACAA ATTC TAGTTTC TTTTTTGTTGCTTCA TERM 1050 950718 - 950704 - G 72 -4.2 -5.16681 | CTAAAAACAATAAAA GCGCTA AAG CAGCAC AAAAAATAACCAAAA CJJ81176_1032 953992 - 950747 - | CcmF/CcyK/CcsA family cytochrome c biogenesis protein livF 954708 - 954010 - | high affinity branched-chain amino acid ABC transporter, ATP-binding protein livG 955462 - 954692 - | high affinity branched-chain amino acid ABC transporter, ATP-binding protein TERM 1051 955198 - 955173 - G 83 -9.9 -3.61015 | overlap 955171 AAACCAATAAGAACA TTTTCAAGCAC ATTC ATGCTTGAAAA AAGCCTAATATTTTG livM 956511 - 955459 - | high affinity branched-chain amino acid ABC transporter, permease protein TERM 1052 956474 - 956460 - G 81 -3.6 -5.56372 | AAACGAAAATAAAAA CAATTG AAG CAATTA AAAAGATTAAATGTG livH 957407 - 956511 - | high affinity branched-chain amino acid ABC transporter, permease protein CJJ81176_1037 958535 - 957426 - | high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein CJJ81176_1038 959672 - 958557 - | high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein CJJ81176_1039 960137 - 959703 - | cytochrome c family protein CJJ81176_1040 960337 - 960146 - | porin domain-containing protein TERM 1053 960312 - 960300 - G 77 -4.9 -5.26119 | GCTGCAAAAACAAAA TGATT TAA AATCA TACCAATTAAAAATA CJJ81176_1041 960895 - 960389 - | hypothetical protein asd 961935 - 960904 - | aspartate-semialdehyde dehydrogenase CJJ81176_1043 963236 - 961935 - | sigma-54 dependent DNA-binding response regulator CJJ81176_1044 963610 - 963293 - | hypothetical protein CJJ81176_1045 964233 - 963718 - | putative lipoprotein gyrA 966890 - 964302 - | DNA gyrase subunit A ctsW 967506 - 966931 - | transformation system protein TERM 1054 967490 - 967473 - G 76 -9.1 -3.14989 | opp_overlap 967472, overlap 967468 967471 ATTCACAAAAGCAGA GCAGAGC AAAA GCTCCGC AATTTATACACCTCA mapA 968147 - 967503 - | outer membrane liproprotein MapA TERM 1055 968192 - 968176 - R 73 -6.7 -4.18697 | AAAATTATTTTAAAA TTGTATT AAA AATACAA GCAAATTTCAAGCCA lepA 970020 - 968224 - | GTP-binding protein LepA TERM 1056 968310 - 968323 + g 74 -5.3 -4.98911 | TTTTACCTTCTTTTT GCTTT TCTA AAAGC TTTCTTTTTCTAGTA CJJ81176_1050 970146 - 971420 + | hypothetical protein CJJ81176_1051 971417 - 972157 + | hypothetical protein CJJ81176_1052 972160 - 975177 + | AcrB/AcrD/AcrF family protein TERM 1057 975195 - 975169 - T 100 -9 -5.05601 | opp_overlap 975169 TATGAGAGAGAAAAA TTAAATTAACCA AAA TGATTAATTTAA TTTTTTTTAAGTATT TERM 1058 975169 - 975195 + T 100 -6.8 -5.85178 | opp_overlap 975169 TATGAGAGAGAAAAA TTAAATTAACCA AAA TGATTAATTTAA TTTTTTTTAAGTATT CJJ81176_1053 976008 - 975202 - | adenylosuccinate lyase TERM 1059 975899 - 975881 - G 95 -7.6 -5.40072 | opp_overlap 975866 975880 TTTTCTTCAAAAAAA GAAAAAAT TTT ATTTTTTC GTCCTATGACCTTTG CJJ81176_1054 976728 - 976009 - | arginyl-tRNA-protein transferase CJJ81176_1055 976979 - 976728 - | hypothetical protein accC-1 978428 - 976983 - | acetyl-CoA carboxylase CJJ81176_1057 978568 - 979731 + | cell cycle protein FtsW TERM 1060 980036 - 980048 + G 72 -7.7 -3.68071 | opp_overlap 980035, overlap 980035 980044 TGTAGGTGGATACAG TGCAG CTC CTGCA TCTTTTGCGGCTTTA murG 979728 - 980756 + | N-acetylglucosaminyl transferase CJJ81176_1059 981059 - 980727 - | hypothetical protein CJJ81176_1060 981351 - 981022 - | putative transmembrane transport protein TERM 1061 981293 - 981320 + gr 80 -2.2 -5.8187 | overlap 981294 TTCCAAGTTGTTAAA TTTATAAAAAGA TTGA TTTTTTTATGAG TTTTTTTCTTAAATA CJJ81176_1061 981808 - 981329 - | putative transmembrane transport protein CJJ81176_1062 982743 - 981892 - | hypothetical protein CJJ81176_1063 983696 - 982806 - | AraC family transcriptional regulator CJJ81176_1064 984298 - 983693 - | thiamine-phosphate pyrophosphorylase, putative thiH 985433 - 984288 - | thiamine biosynthesis protein ThiH TERM 1062 985255 - 985281 + g 72 -8.8 -3.01537 | overlap 985255 ATGAAATCTTCTGCT GCACTTGAAAGC AAG GCTTTTAAATGC TCTATGCTTAAATGT thiG 986212 - 985436 - | thiazole synthase thiF 987018 - 986215 - | thiamine biosynthesis protein ThiF thiS 987206 - 987015 - | thiamine biosynthesis protein ThiS dapE 988313 - 987216 - | succinyl-diaminopimelate desuccinylase CJJ81176_1070 988916 - 988317 - | amino acid transporter LysE CJJ81176_1071 989610 - 988909 - | NAD-dependent deacetylase mutS 991814 - 989607 - | recombination and DNA strand exchange inhibitor protein TERM 1063 990678 - 990664 - G 70 -5.8 -4.22524 | ATACCTAAAAGCAAA TTTTTC TTA GAAAAA AGCCTAGAAAAATGC CJJ81176_1073 992157 - 991807 - | hypothetical protein TERM 1064 992057 - 992072 + g 74 -3.3 -5.49729 | opp_overlap 992057 992058 ATCACAAGTAAAATA CCAAA AAAAGG TTTGG TTTTTTTGCCTAATT murC 993445 - 992150 - | UDP-N-acetylmuramate--L-alanine ligase TERM 1065 993196 - 993184 - G 71 -7.7 -3.53012 | opp_overlap 993184, overlap 993168 CCTCTTTGCGTGAAA GGCAT TTA ATGCC TAATTCTTTAGCGTA CJJ81176_1075 995485 - 993512 - | putative integral membrane protein CJJ81176_1076 996273 - 995497 - | carbon-nitrogen family hydrolase CJJ81176_1077 996439 - 996266 - | exodeoxyribonuclease VII, small subunit, putative guaB 997893 - 996436 - | inositol-5-monophosphate dehydrogenase gatA 999264 - 997903 - | aspartyl/glutamyl-tRNA amidotransferase subunit A ileS 1002118 - 999365 - | isoleucyl-tRNA synthetase TERM 1066 1001974 - 1001987 + g 83 -6.7 -5.10516 | AGGTAAAACTTTTTT TCGCA TTTT TGCGA TTTTCTTTCATTTTT TERM 1067 1002430 - 1002449 + G 81 -9.4 -3.69323 | TTGCATTATGCGACT GTTGCTAA AATT TTAGCAAC TTTAAATGATGATAA CJJ81176_1081 1002217 - 1003305 + | competence/damage-inducible domain-containing protein TERM 1068 1003369 - 1003354 - g 75 -4.8 -5.04987 | AAGACTTGGAAAAAA TTTATC CCTT GATAAA ACAATTAAGAAATAA TERM 1069 1003389 - 1003399 + G 70 -4 -5.00884 | opp_overlap 1003389 1003398 TTAAGAAATAACCTA TCTT TGA AAGA TTTTTTAGACAAAAT CJJ81176_1082 1003317 - 1003742 + | acetyltransferase CJJ81176_1083 1003806 - 1004426 + | nitroreducatase family protein, authentic frameshift TERM 1070 1004666 - 1004676 + G 75 -4 -5.23016 | TTAATTATAATCATT TCAA GAC TTGA TTTTTTGGATTATTT CJJ81176_1084 1004426 - 1005031 + | nitroreductase family protein TERM 1071 1005060 - 1005023 - f 100 -16.1 -4.15106 | opp_overlap 1005017 1005033 GATGAAGTTGTAAAA TTTATTTAAATTTTGCT TTTA AGCAAAATTTAAATAAA AATAAACTGATTCTT TERM 1072 1005196 - 1005209 + G 88 -3.1 -6.15536 | TTTTTAGAATGGTTT TAGCG CCTT TGCTA TTTTTTTTGTTAATT pgsA 1005156 - 1005692 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CJJ81176_1086 1005689 - 1006795 + | membrane-associated zinc metalloprotease, putative TERM 1073 1007214 - 1007196 - g 71 -3.2 -5.2696 | TTAAAATTTAAAAAA TACACTAT TTC ACAATGTA ATTTTTGCTTTACTT CJJ81176_1087 1006788 - 1007654 + | hypothetical protein rpsF 1007741 - 1008118 + | 30S ribosomal protein S6 TERM 1074 1008448 - 1008428 - g 74 -8.3 -3.69618 | overlap 1008426 TTCAAGTTGAAAATA TGGAAATGC TTG GCAATTCCA ATGCTCCACAACAAG ssb 1008127 - 1008675 + | single-strand DNA-binding protein TERM 1075 1008853 - 1008839 - g 75 -4.3 -5.32944 | GGCACAAGCAAAAAA TACCA AGAAA TGGTA GAAGTTGCAATCAAA rpsR 1008686 - 1008946 + | 30S ribosomal protein S18 TERM 1076 1008976 - 1008956 - T 77 -8.4 -3.58533 | opp_overlap 1008956 CTATAATCTTTTAAA GCAAACTT GTAAA AAGTTTGC TTTCTTATACATTTA TERM 1077 1008956 - 1008976 + T 85 -8.4 -4.37211 | opp_overlap 1008956 CTATAATCTTTTAAA GCAAACTT GTAAA AAGTTTGC TTTCTTATACATTTA lon 1011381 - 1009006 - | ATP-dependent protease La TERM 1078 1009846 - 1009860 + g 75 -5.8 -4.74504 | opp_overlap 1009856 TGGAATTAAATATTT TTTCAT TAT ATGAAA TTTTTCACTTGGAGT TERM 1079 1010452 - 1010462 + g 70 -4 -5.00616 | CTTAATATCAAGTTT TTTC TTA GAAA TTTTTTCAAAAGGAA TERM 1080 1010544 - 1010559 + g 72 -2.6 -5.48163 | CTTGATGAATGCGTT CGAATT TTTC AATTTG TTTTTTGATTTCTTT CJJ81176_1092 1012045 - 1011398 - | putative lipoprotein TERM 1081 1011588 - 1011602 + g 74 -8.6 -3.37198 | overlap 1011586 TTTGTAAGCATTGTC TGAACC AAA GGTTCA TATTCTGTATAAGGA TERM 1082 1012295 - 1012321 + G 73 -3.8 -5.18643 | opp_overlap 1012300, overlap 1012291 1012300 AGTATTTGTAAGACT TAAAAGTCTTGA TGG TAAAGACTTTTC TTTTGTTTTAATTAA TERM 1083 1012300 - 1012316 + G 76 -3.7 -5.40279 | opp_overlap 1012300, overlap 1012291 1012295 TTGTAAGACTTAAAA GTCTTGA TGG TAAAGAC TTTTCTTTTGTTTTA CJJ81176_1093 1012206 - 1012595 + | flagellar assembly protein FliW TERM 1084 1012723 - 1012694 - g 70 -3.6 -5.05079 | overlap 1012680 1012695 1012715 AGAAGTATAGAAAAA CTTCAAGCCCTC GCCAAA GAAGGCTTTAAA ACCTTACTTTACAAA TERM 1085 1013192 - 1013172 - g 70 -6.2 -4.18018 | GCTCTTTATTTAAAA GCTCTAGT GCTTT ACTAGAAC ATGAACATCCAGCTA proC 1012595 - 1013326 + | pyrroline-5-carboxylate reductase ctsT 1013323 - 1013625 + | transformation system protein TERM 1086 1013812 - 1013793 - g 84 -6.6 -5.28983 | opp_overlap 1013791 1013793 1013797 CTTAAAATAGAAAAA TTAATACA AAAT TGTATTAA TATTACATTTTCACA TERM 1087 1014249 - 1014232 - g 75 -4.9 -5.10877 | ACAATAAATTAAAAA TTTGCCT AAAA AGACAAA CAAAATATTGCCTTG CJJ81176_1096 1013622 - 1014284 + | hypothetical protein CJJ81176_1097 1014281 - 1014733 + | hypothetical protein hemD 1015359 - 1014730 - | uroporphyrinogen-III synthase thiE 1015969 - 1015337 - | thiamine-phosphate pyrophosphorylase thiD 1016771 - 1015959 - | phosphomethylpyrimidine kinase CJJ81176_1101 1017454 - 1016768 - | endonuclease III, putative CJJ81176_1102 1018212 - 1017451 - | hypothetical protein TERM 1088 1018076 - 1018092 + g 83 -2.3 -5.89947 | TGAATGAAATTTAAA GTATTTT CAT AAAGTGC TTTTTTTTGACTTTC mfd 1021150 - 1018214 - | transcription-repair coupling factor TERM 1089 1019863 - 1019874 + g 71 -3 -5.24003 | TTTCAGAAGCTATGG CTAA AAGT TTAG TTTTTAATTTTTCTT TERM 1090 1020263 - 1020284 + g 73 -5.9 -4.66163 | opp_overlap 1020267 AGTATCTTCAAGCTC CAAAGCTTT AAAC AAAGCTTCG TTTTTAGCTAAAAGT CJJ81176_1104 1021545 - 1021150 - | hypothetical protein CJJ81176_1105 1022384 - 1021482 - | M24/M37 family peptidase TERM 1091 1022096 - 1022080 - GR 72 -7.3 -3.66356 | opp_overlap 1022080 1022078, overlap 1022092 ACTTCTAAGCCCAAA GCCTCTT CAA AAGAAGC TATTTTATCTTCTAT folC 1023543 - 1022371 - | folC bifunctional protein TERM 1092 1022621 - 1022633 + g 76 -3.5 -5.37345 | TCCAAATAAGCATTA TAAAT AAG ATTTA TTTTTTCTCCTTGAA TERM 1093 1022913 - 1022933 + g 93 -5.5 -5.86965 | opp_overlap 1022912 1022915 1022930, overlap 1022915 1022930 AAGAAACTTGCAAAT TAGCTTTTT TTA AAAAAGCAA TTTTTTTTGCTAAAT TERM 1094 1023422 - 1023442 + g 70 -6.3 -4.11027 | overlap 1023426 ATAAGTTGGATTATG GGAATATTT TTA AAATATTTC TTATATTTTTCATAC CJJ81176_1107 1024918 - 1023521 - | hypothetical protein TERM 1095 1024093 - 1024109 + g 74 -2.3 -5.64006 | opp_overlap 1024093 CATCTGGTTTTAAAG TATTGAT AAA ATCCATA TTTTTTTCATTCGAT CJJ81176_1108 1025246 - 1024902 - | putative lipoprotein leuS 1027840 - 1025411 - | leucyl-tRNA synthetase TERM 1096 1027096 - 1027113 + g 86 -7.1 -5.33921 | opp_overlap 1027095 TTGTAGTAAAAACTT CTAAAGA ACTT TCTTTAG TTTTTTGCTTGCTTT secF 1028821 - 1027850 - | preprotein translocase subunit SecF secD 1030401 - 1028821 - | preprotein translocase subunit SecD yajC 1030666 - 1030394 - | preprotein translocase subunit YajC TERM 1097 1030957 - 1030970 + Gr 77 -5.3 -4.99645 | opp_overlap 1030957 TTAGTGCCAATTATA CCAAT TATC ATTGG TTTTATTTATGGACT TERM 1098 1031641 - 1031626 - gR 83 -3.4 -5.8187 | opp_overlap 1031630, overlap 1031630 GACTTAACAAAAAAA TATTTT CTTA AAAATA TTGAAGAATTTTCTA cutE 1030639 - 1031964 + | apolipoprotein N-acyltransferase TERM 1099 1031984 - 1031962 - TR 73 -3.6 -5.37345 | opp_overlap 1031967 1031982 TTTAATGATAAAAAA TAATATTAAA AAT TTTAATTTTA AAGTAATTTAAGTTA TERM 1100 1032188 - 1032160 - TR 80 -9.8 -3.31501 | opp_overlap 1032160 1032158 ATTAATTCTTTATAA TTATACAAGCCT TATTT AAGCTTGTATAA TATTGTTAATTTTTT TERM 1101 1032160 - 1032188 + Tr 70 -7.6 -3.6014 | opp_overlap 1032160, overlap 1032158 ATTAATTCTTTATAA TTATACAAGCCT TATTT AAGCTTGTATAA TATTGTTAATTTTTT metK 1033413 - 1032202 - | S-adenosylmethionine synthetase CJJ81176_1115 1033538 - 1034761 + | serine/threonine transporter SstT pyrB 1034771 - 1035658 + | aspartate carbamoyltransferase catalytic subunit pepF 1035662 - 1037380 + | oligoendopeptidase F CJJ81176_1118 1037374 - 1037811 + | hypothetical protein TERM 1102 1038212 - 1038192 - g 77 -5.5 -4.98911 | CATGATAAAAACAAA GATAATGTC TAT GATATTATC CAATACATATCTTAT TERM 1103 1038617 - 1038595 - g 72 -5 -4.72272 | opp_overlap 1038595 1038611, overlap 1038604 1038611 GGCGTGGAGCAAAAA TTGAAAATAT TTT AAATTTTCAA AACGATTTTAAAAAT CJJ81176_1119 1037808 - 1039883 + | ATP-dependent DNA helicase UvrD truB 1039880 - 1040698 + | tRNA pseudouridine synthase B TERM 1104 1040842 - 1040830 - g 72 -6.3 -4.33785 | ATACTTAGAAAAGAA CTTGT TCA ACAAG TAAAGGATGAAAATT csrA 1040692 - 1040919 + | carbon storage regulator ispE 1040916 - 1041683 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 1105 1042039 - 1042015 - g 82 -5.1 -5.47159 | TTTTAACACAAAAAA TAAAGTAAAAG CCA CTCTTGCTTTA GCTAAAGGGAAAAAT smpB 1041680 - 1042132 + | SsrA-binding protein CJJ81176_1124 1042143 - 1042745 + | thioredoxin domain-containing protein TERM 1106 1042875 - 1042851 - g 83 -8.8 -4.03413 | ATTTTGTCATAGAAA TTTTGATGAA TATTT TTCATCAAAA CCTTGAAAAAGCAAG CJJ81176_1125 1042745 - 1043035 + | hypothetical protein TERM 1107 1043326 - 1043316 - gf 76 -2.6 -5.63236 | overlap 1043270 ATCTAAAAATAAAAA TAAT GAA ATTA AAATTATAGATTTTT TERM 1108 1043589 - 1043574 - gf 76 -6.2 -4.63592 | TCGCAAGAAAAATAA TCCTAT TTTA ATAGGA GAAGCAGGAGTTGGC TERM 1109 1044088 - 1044036 - gf 100 -9.6 -5.243 | gap 1, opp_overlap 1044041 1044046 1044049, overlap 1044040 1044042 TAAAGGATTAAAAAA CAAATATGAAGAATTTCATCATATA AAAT TAAACGATGAAATTCTTCA-ATATG CTGTAATTTGGGGTA TERM 1110 1044086 - 1044040 - gf 100 -9.9 -5.0917 | gap 1, opp_overlap 1044041 1044046 1044049, overlap 1044036 1044042 GGATTAAAAAACAAA TA-TGAAGAATTTCATCATATA AAAT TAAACGATGAAATTCTTCAATA TGCTGTAATTTGGGG TERM 1111 1044041 - 1044084 + GF 71 -8.4 -2.90725 | opp_overlap 1044040 1044036 1044042, overlap 1044046 1044049 GATTAAAAAACAAAT ATGAAGAATTTCATCATATA AAAT TAAACGATGAAATTCTTCAA TATGCTGTAATTTGG TERM 1112 1044083 - 1044042 - gf 100 -14.1 -4.15047 | opp_overlap 1044041 1044046 1044049, overlap 1044040 1044036 ATTAAAAAACAAATA TGAAGAATTTCATCATATA AAAT TAAACGATGAAATTCTTCA ATATGCTGTAATTTG clpA 1043032 - 1045161 + | ATP-dependent Clp protease, ATP-binding subunit ClpA aat 1045136 - 1045783 + | leucyl/phenylalanyl-tRNA--protein transferase TERM 1113 1045807 - 1045787 - T 100 -12.7 -4.7078 | opp_overlap 1045790, overlap 1045779 TTAATTACTTAAAAA TAAGCGTGA AAA TCACGCTTA TGACATCGCTTTAGC TERM 1114 1045790 - 1045804 + T 82 -10 -3.34236 | opp_overlap 1045787 ATTACTTAAAAATAA GCGTGA AAA TCACGC TTATGACATCGCTTT CJJ81176_1128 1047094 - 1045805 - | methyl-accepting chemotaxis protein TERM 1115 1046385 - 1046407 + g 80 -2 -5.74288 | opp_overlap 1046391, overlap 1046386 TCATTTTTAACCGGA TTATAACTTG CTT CAAGGTATAC TTTTTTATTATTTCT CJJ81176_1129 1047802 - 1047176 - | MarC family integral membrane protein msrB 1048176 - 1047817 - | methionine sulfoxide reductase B TERM 1116 1048776 - 1048793 + G 71 -5.5 -4.44667 | opp_overlap 1048776, overlap 1048772 GGTTTAGAAGCTAAA GGGCTTG ATGC CAACCCC TTTGTTGTTCAAAAA TERM 1117 1048824 - 1048852 + G 76 -9.1 -3.11559 | opp_overlap 1048817 1048816 1048826, overlap 1048826 CTTCAAAGTTCCAAT CATTCCATTAAAA ATC TTTTAATGGAATA TCTTGAAATTATACT TERM 1118 1048850 - 1048826 - g 89 -11.7 -2.74514 | opp_overlap 1048826 1048824, overlap 1048817 1048816 TCAAAGTTCCAATCA TTCCATTAAAA ATC TTTTAATGGAA TATCTTGAAATTATA TERM 1119 1048826 - 1048850 + G 93 -11.7 -3.11326 | opp_overlap 1048817 1048816 1048826, overlap 1048824 TCAAAGTTCCAATCA TTCCATTAAAA ATC TTTTAATGGAA TATCTTGAAATTATA TERM 1120 1049001 - 1048989 - g 76 -2.7 -5.52384 | CTTGCAGGAAAAAAA CTTAA CAT TCAAG CAAGAATCAAAGCTG CJJ81176_1131 1048266 - 1049063 + | hypothetical protein pssA 1049782 - 1049054 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 1121 1049547 - 1049530 - G 78 -4.1 -5.38047 | overlap 1049533 TAGCCATATAAAAAA GAACTGC TGGA GCAACTC CAAAAGCTACTAGAT TERM 1122 1049553 - 1049533 - G 78 -6.1 -4.77122 | overlap 1049530 CCATATAAAAAAGAA CTGCTGGAG CAA CTCCAAAAG CTACTAGATCAGCTA TERM 1123 1049608 - 1049574 - G 79 -8.1 -3.98075 | gap 1, opp_overlap 1049579, overlap 1049571 1049575 1049579 AGATCAGCTAAAGAA TCAAATTCTAC-TCCA AATT TGGAAGTAGAATTTGT AAGTCTTGCAACACG TERM 1124 1049607 - 1049575 - G 87 -11.6 -2.98122 | gap 1, opp_overlap 1049579, overlap 1049571 1049574 1049579 GATCAGCTAAAGAAT CAAATTCTAC-TCCA AATT TGGAAGTAGAATTTG TAAGTCTTGCAACAC TERM 1125 1049579 - 1049603 + g 71 -6.6 -3.9777 | gap 1, opp_overlap 1049571 1049575 1049574 1049579 AGCTAAAGAATCAAA TTCTAC-TCCA AATT TGGAAGTAGAA TTTGTAAGTCTTGCA TERM 1126 1049603 - 1049579 - G 72 -6.6 -4.15366 | gap 1, opp_overlap 1049579, overlap 1049571 1049575 1049574 AGCTAAAGAATCAAA TTCTAC-TCCA AATT TGGAAGTAGAA TTTGTAAGTCTTGCA TERM 1127 1049734 - 1049724 - G 83 -6.8 -5.06103 | ATAACCCCTAAAAAA GCTG AAG CAGC TGTAAAAAGATTGGG CJJ81176_1133 1050409 - 1049792 - | phosphatidylserine decarboxylase-related protein ftsH 1052343 - 1050406 - | cell division protein FtsH TERM 1128 1050688 - 1050698 + g 70 -4 -4.85782 | opp_overlap 1050688 TTGCCCACCACTTAA GAAA GTA TTTC TTTGTTTTTCAAGCA prmA 1053192 - 1052347 - | ribosomal protein L11 methyltransferase cheY 1053607 - 1053215 - | chemotaxis protein CheY pglG 1054613 - 1053720 - | general glycosylation pathway protein pglF 1056385 - 1054613 - | general glycosylation pathway protein TERM 1129 1054828 - 1054869 + g 72 -2.6 -5.47821 | gap 1 CTTTTCTTAAGCCTG TGATTTTAATTTCTAAATC ATTGC GATT-AGAAAGTAAAAGCA TTTTTTTAGCTAAAT TERM 1130 1055016 - 1054992 - G 73 -5.8 -4.58466 | GCCACAAGCATAAAA TAACGCAC TATATCAGG GTGCGTTA AAGTTAAAGGCTCAT TERM 1131 1055271 - 1055257 - G 71 -5.8 -4.40804 | opp_overlap 1055257 1055255 1055252 CACTATCGCATAAAA TTTTAG TTC CTAAAA TATTATTGATTACTG TERM 1132 1055596 - 1055586 - G 75 -4.6 -5.02074 | TTATCTTTTAAAAAA GCCG CCA CAGC ACTATCATCTAAATC TERM 1133 1056138 - 1056122 - G 76 -2.9 -5.64328 | AAGAAAAAAACAAAA CTCAGCT AAA AGCAAAG CGATAAAAATTTTTC pglE 1057547 - 1056387 - | general glycosylation pathway protein pglD 1058256 - 1057645 - | general glycosylation pathway protein pglC 1058824 - 1058222 - | general glycosylation pathway protein TERM 1134 1058345 - 1058334 - GR 72 -3 -5.33921 | AAATCAAGCAAAAAA GAAA TATT TTTC ACATAATACACATCA TERM 1135 1058501 - 1058488 - GR 71 -5.9 -4.45151 | AATACTCAACCAAAA GAGGC CTAG GCCCC ACAAAACTCATATCC TERM 1136 1058776 - 1058764 - GR 75 -4.1 -5.26316 | TCACCGGAGAAAAAA GTACT AAA AGCAC TAAAGCTAAAATAAA pglA 1059947 - 1058817 - | general glycosylation pathway protein TERM 1137 1059377 - 1059407 + g 82 -4.2 -5.54192 | TCCAAAAAAGCTCTT TTTTTTCCGATT CTACATA AATAGGAAAAAA TTTTTTTAAATTGAT pglB 1062098 - 1059957 - | general glycosylation pathway protein pglJ 1063199 - 1062102 - | general glycosylation pathway protein TERM 1138 1062803 - 1062779 - G 71 -7.3 -3.86015 | overlap 1062766 CAGCTCTTGGATAAA GCAAAGAAATT AAA AATTTATTTGC CAAAGAATTAAAATT pglI 1064116 - 1063187 - | general glycosylation pathway protein TERM 1139 1063267 - 1063284 + g 70 -4.1 -4.91109 | opp_overlap 1063267 TTAAAATGAGTAATA TCAAAGC AGGA GCGTTGA TTTTTATACTCAGGC TERM 1140 1063314 - 1063331 + g 72 -4.3 -5.08011 | opp_overlap 1063314 1063307 CTTTTAAACAAACAC TTATAAA GAGC TTTATAA TTTTTTGCAAGTTTT pglH 1065188 - 1064109 - | general glycosylation pathway protein TERM 1141 1064791 - 1064779 - G 70 -4.1 -4.95806 | AAAGCATCACAAAAA GGATA GCT TACCC TTCTTAAAAAACGCC wlaB 1066879 - 1065185 - | ABC transporter, permease/ATP-binding protein TERM 1142 1066443 - 1066433 - G 72 -4 -5.1166 | CACCAAAAGTAAAAA TGAT GAA ATCA TAGTGCTTAGATTAT TERM 1143 1066854 - 1066816 - G 100 -13.6 -5.18561 | opp_overlap 1066829, overlap 1066829 CAAATACTGAAAAAA TAAGTAAGAAAAATAAAA AAT TTTTATCTTCCTTACTTA AAATAAAAAAAAGTT TERM 1144 1066841 - 1066829 - G 73 -3.5 -5.23396 | opp_overlap 1066829, overlap 1066816 AATAAGTAAGAAAAA TAAAA AAT TTTTA TCTTCCTTACTTAAA galE 1067859 - 1066873 - | UDP-glucose 4-epimerase wlaX 1068712 - 1067918 - | polysaccharide biosynthesis protein waaC 1068778 - 1069806 + | lipopolysaccharide heptosyltransferase I waaM 1069796 - 1070683 + | lipid A biosynthesis lauroyl acyltransferase TERM 1145 1072174 - 1072163 - g 88 -4.4 -5.69023 | AAAATAGCAAAAAAA TGCT CGAA AGCA ATCATCAAATTTATT CJJ81176_1152 1070680 - 1072227 + | lipooligosaccharide biosynthesis glycosyltransferase, putative TERM 1146 1073316 - 1073295 - g 81 -5.9 -5.32608 | opp_overlap 1073294, overlap 1073297 AAAAAATTTAAAAAA GATCCTTTA AATT TAAAGGAAC AATTAGTTTTAATTA TERM 1147 1073314 - 1073297 - g 77 -7.1 -4.24654 | opp_overlap 1073294, overlap 1073295 AAAATTTAAAAAAGA TCCTTTA AATT TAAAGGA ACAATTAGTTTTAAT CJJ81176_1153 1072218 - 1073399 + | galactosyltransferase TERM 1148 1074008 - 1073990 - g 71 -4.6 -4.83169 | opp_overlap 1073992 AGTGGCTTATAAAAA TAGATGTG GAT CATATCTA TGATGCTAAAAAACT TERM 1149 1074032 - 1074022 - g 72 -4 -5.06451 | opp_overlap 1074022 TATGATGCTAAAAAA CTTT ATA AAAG CTTCTATATACCAAA CJJ81176_1154 1073704 - 1074489 + | beta-1,4-N-acetylgalactosaminyltransferase CJJ81176_1155 1074828 - 1074475 - | beta-1,3-galactosyltransferase CJJ81176_1156 1075381 - 1074836 - | beta-1,3-galactosyltransferase CJJ81176_1157 1075470 - 1076345 + | alpha-2,3-sialyltransferase CJJ81176_1158 1076346 - 1077386 + | sialic acid synthase CJJ81176_1159 1077383 - 1078507 + | UDP-N-acetylglucosamine 2-epimerase CJJ81176_1160 1078500 - 1079447 + | beta-1,4-N-acetylgalactosaminyltransferase CJJ81176_1161 1079444 - 1080109 + | CMP-Neu5Ac synthetase CJJ81176_1162 1080232 - 1080840 + | acetyltransferase waaV 1081748 - 1080921 - | lipooligosaccharide biosynthesis glycosyltransferase waaF 1081807 - 1082760 + | ADP-heptose--LPS heptosyltransferase II CJJ81176_1165 1083522 - 1082767 - | LPS glycosyltransferase subfamily protein TERM 1150 1083442 - 1083458 + g 83 -6.7 -5.02777 | opp_overlap 1083437 1083435, overlap 1083437 1083435 TAAACTAAGATTTTT TTCAAAA AGC TTTTGAA TTTGTTTTTGTATAT gmhA-1 1084082 - 1083522 - | phosphoheptose isomerase hldE 1085464 - 1084079 - | D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase TERM 1151 1084340 - 1084350 + g 72 -6.8 -4.11394 | overlap 1084330 TACAGGACGACTCTC GCCT TTG AGGC TTTTCACACTCGCAT TERM 1152 1084678 - 1084668 - G 77 -4.6 -5.27335 | overlap 1084676 TTTGCCAAACAAAAA GCCA AAA CGGC AATCACACTATCGCC waaD 1086410 - 1085457 - | ADP-L-glycero-D-mannoheptose-6-epimerase CJJ81176_1169 1086971 - 1086411 - | hydrolase, putative cyf 1087053 - 1087355 + | cytochrome c553 TERM 1153 1087388 - 1087367 - T 86 -6.7 -5.06103 | gap 1, opp_overlap 1087367, overlap 1087356 ATAATTTCTAAAAAA GGCTTTTCTT TTT AAGAAA-GCC TTTTTTTATCCAAAG TERM 1154 1087367 - 1087388 + T 100 -6.7 -5.60993 | gap 1, opp_overlap 1087356 1087367 ATAATTTCTAAAAAA GGCTTTTCTT TTT AAGAAA-GCC TTTTTTTATCCAAAG CJJ81176_1171 1087584 - 1087378 - | cytochrome oxidase maturation protein, cbb3-type, putative CJJ81176_1172 1089932 - 1087581 - | heavy metal translocating P-type ATPase TERM 1155 1087725 - 1087714 - G 82 -4.4 -5.59962 | opp_overlap 1087714, overlap 1087715 TAAAACAAAGAAAAA GCAA GATT TTGC TTGATAATTTTAAAG rho 1090047 - 1091345 + | transcription termination factor Rho TERM 1156 1092817 - 1092799 - g 77 -9.6 -2.95472 | overlap 1092798 ATATGCTTAAAGAAG GGGCCAAA AAA TTTGACCC ACAAGAAGATCTTAA dnaX 1091349 - 1092878 + | DNA polymerase III subunits gamma and tau CJJ81176_1746 1093396 - 1092875 - | hypothetical protein CJJ81176_1176 1095567 - 1093468 - | copper-translocating P-type ATPase CJJ81176_1177 1095731 - 1095567 - | hypothetical protein CJJ81176_1178 1096701 - 1095751 - | cation efflux family protein TERM 1157 1096703 - 1096753 + r 77 -9.5 -2.96101 | gap 1, opp_overlap 1096701, overlap 1096702 AAAAATTTATACATC TTATATCCTTTTT-GCTTGACATT TTAA GATATTAAGCTAAAAAGGATATAA ATATTTGTTATTTTT CJJ81176_1179 1097039 - 1096776 - | hypothetical protein CJJ81176_1180 1097603 - 1097109 - | hypothetical protein CJJ81176_1181 1098376 - 1097600 - | hypothetical protein TERM 1158 1097757 - 1097747 - G 79 -5.4 -5.3236 | AGAATTTATAAAAAA TACC CCT GGTA TAAGATACAAGATAC TERM 1159 1099353 - 1099340 - g 70 -3.8 -5.10877 | ACAACAAATCAAAAA CGCT ATACAA AGCG TAAAAGATAAAATTT ldh 1098444 - 1099370 + | L-lactate dehydrogenase TERM 1160 1099385 - 1099371 - T 75 -8.6 -3.46285 | opp_overlap 1099371, overlap 1099367 AAAGATAAAATTTAA GCCTTT TTA AAAGGC TTTTTGATTTTGATA TERM 1161 1099371 - 1099385 + T 100 -8.6 -5.1166 | opp_overlap 1099371 1099367 AAAGATAAAATTTAA GCCTTT TTA AAAGGC TTTTTGATTTTGATA CJJ81176_1183 1099969 - 1099367 - | DedA family protein TERM 1162 1099963 - 1099953 - G 70 -4 -4.89477 | opp_overlap 1099953 GTCTCAACAACAAAA GAAA TGA TTTC TTGCATATTAGCCTT TERM 1163 1100044 - 1100030 - R 86 -7.1 -4.946 | opp_overlap 1100030, overlap 1100024 ATTAAACAGTAAAAA GCGGT TTTAC ACCGC TTTTTTATTTACCTG TERM 1164 1100030 - 1100044 + r 100 -7.1 -5.65927 | opp_overlap 1100030 1100024 ATTAAACAGTAAAAA GCGGT TTTAC ACCGC TTTTTTATTTACCTG CJJ81176_1184 1100276 - 1100049 - | hypothetical protein CJJ81176_1185 1101687 - 1100287 - | hypothetical protein TERM 1165 1101570 - 1101591 + g 81 -7.3 -4.62872 | overlap 1101568 1101558 1101585 TGATTTGTGCAAGTT CAGCTTGAA TTTG TGCAAGCTG TTTTTGAAGCTTGGT TERM 1166 1101686 - 1101670 - G 70 -8.1 -3.13007 | opp_overlap 1101666, overlap 1101657 1101656 1101666 1101669 AGCACTTAAAATAAG TGAAAAC TTA GTTTTCA TAATCATAACTCCTT TERM 1167 1101784 - 1101805 + r 83 -8.8 -3.98842 | CATTAATTATTTTTA GCTAGTCA AATTTA TGACTAGC TTTGTAAATATTGTA ppiB 1102333 - 1101851 - | peptidyl-prolyl cis-trans isomerase B CJJ81176_1187 1103050 - 1102343 - | hypothetical protein TERM 1168 1102698 - 1102716 + g 71 -9 -2.79492 | opp_overlap 1102714, overlap 1102697 TGTAAAACTTCTCCA CCATTTTT GCT AAAAATGG CTTTAACATTAGCCA TERM 1169 1103117 - 1103140 + H 78 -6.9 -4.56597 | opp_overlap 1103121, overlap 1103121 GGCTAATTAAAGCTT TAAATGGTA TGATTT TACCATTTA TTTTTAGGGAGAAGC CJJ81176_1188 1103159 - 1103500 + | SMR family multidrug efflux pump CJJ81176_1189 1103500 - 1103808 + | SMR family multidrug efflux pump TERM 1170 1103803 - 1103831 + T 77 -8.3 -3.5268 | opp_overlap 1103802 1103805 1103811, overlap 1103805 1103811 GTATTTTTACTAAAC TATTAAAACAGCA AAA TGCGGTTTTAATG TTCCATTTTGTTTTT TERM 1171 1103805 - 1103829 + T 75 -8.7 -3.29811 | opp_overlap 1103802 1103805 1103811, overlap 1103803 1103811 ATTTTTACTAAACTA TTAAAACAGCA AAA TGCGGTTTTAA TGTTCCATTTTGTTT TERM 1172 1103829 - 1103805 - T 71 -8.7 -2.96873 | opp_overlap 1103805 1103803 1103811, overlap 1103802 1103811 ATTTTTACTAAACTA TTAAAACAGCA AAA TGCGGTTTTAA TGTTCCATTTTGTTT argS 1105418 - 1103826 - | arginyl-tRNA synthetase TERM 1173 1103924 - 1103899 - G 74 -7.1 -4.00469 | opp_overlap 1103899, overlap 1103912 CTAAGAGCAACCAAA GAAAATAATTT AAGC AAATCATTTTC ATTTGCAGAGCCTAC CJJ81176_1191 1105669 - 1105430 - | twin arginine-targeting protein translocase gmk 1106294 - 1105671 - | guanylate kinase CJJ81176_1193 1107919 - 1106291 - | hypothetical protein TERM 1174 1106338 - 1106358 + g 75 -9.1 -2.98479 | overlap 1106332 TATTCATATTCATAC CCTTAAGAG CAG CTTTTAAGG TATCATCTTTAATAC fliR 1108743 - 1107976 - | flagellar biosynthesis protein FliR CJJ81176_1195 1109365 - 1108730 - | ABC transporter, ATP-binding protein TERM 1175 1108948 - 1108932 - G 73 -8.7 -3.05997 | opp_overlap 1108930 1108932 TTTTTACAAAGCACA CGTGCGA TAC TCACACG CTGTTGTTGTCCGCC TERM 1176 1109350 - 1109317 - G 70 -5.3 -4.64657 | TTAAACCCTCAAAAA GCGGATAATCAAAAC TATG GCTTAAATTTTCCGC TCTTAAGAGTTCCAT tsf 1110451 - 1109378 - | elongation factor Ts rpsB 1111242 - 1110451 - | 30S ribosomal protein S2 CJJ81176_1198 1112521 - 1111358 - | cyclopropane-fatty-acyl-phospholipid synthase, putative petC 1113773 - 1112649 - | ubiquinol--cytochrome c reductase, cytochrome c1 subunit petB 1115020 - 1113770 - | ubiquinol--cytochrome c reductase, cytochrome b subunit petA 1115525 - 1115022 - | ubiquinol--cytochrome c reductase, iron-sulfur subunit TERM 1177 1115410 - 1115428 + g 78 -3.1 -5.52384 | opp_overlap 1115410 CCTGCAGCTTTAACA CTTGGAA GCGGA TCCCAAG TTTTTTTCATCGCAA arsB 1116902 - 1115616 - | arsenical pump membrane protein TERM 1178 1116229 - 1116213 - G 74 -2.3 -5.65927 | opp_overlap 1116216, overlap 1116216 TATGCAAAGAAAAAA CAATTTC AAT GAAATTT GCTCTTTTTTGATTA TERM 1179 1116226 - 1116216 - G 70 -4 -4.88687 | opp_overlap 1116216, overlap 1116213 GCAAAGAAAAAACAA TTTC AAT GAAA TTTGCTCTTTTTTGA TERM 1180 1116350 - 1116325 - G 86 -2.7 -6.11229 | opp_overlap 1116340, overlap 1116317 1116340 AGCAAAACAAAAAAA TTTGGCAAAAA CATA TTTTTAGCAAA TTCTAAAAATTCTAT gidA 1118762 - 1116903 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 1181 1118843 - 1118810 - R 77 -9.1 -3.38034 | opp_overlap 1118808, overlap 1118808 1118811 AAAGATTATATAATA TTTAGACTTAAAACA AACT CGTTTTAAGTCTAAC AAAAATTTATTTAGC TERM 1182 1118842 - 1118811 - R 95 -12.6 -2.61736 | opp_overlap 1118808, overlap 1118810 1118808 AAGATTATATAATAT TTAGACTTAAAACA AACT CGTTTTAAGTCTAA CAAAAATTTATTTAG CJJ81176_1204 1119347 - 1118850 - | methyl-accepting chemotaxis protein TERM 1183 1118894 - 1118913 + g 70 -5 -4.61231 | overlap 1118896 GCTCATTATAAGTTT TATCTGCA TCTT TGCAGAAA TTTTTAAGCATCTCA CJJ81176_1205 1120744 - 1119365 - | methyl-accepting chemotaxis protein TERM 1184 1120016 - 1120040 + g 76 -6.6 -4.4715 | ATCGGCTATATCGCG TATTACTTCA ACCAC TGAAGTGATA TTTTGTGAATTAGCC TERM 1185 1120175 - 1120187 + g 71 -4.9 -4.78107 | AGAAATGGCATCCAC TGTAT CAT ATACA TTTTTCATCATGCTA CJJ81176_1206 1121359 - 1120865 - | methyl-accepting chemotaxis protein TERM 1186 1120923 - 1120891 - G 71 -4.5 -4.74103 | gap 1 CTTGTAAGTTAAAAA TAAGTTCATTATAA GTCATT TTATAA-GAACTTA CAATATCCATTAAAG dctA 1121628 - 1123004 + | C4-dicarboxylate transport protein CJJ81176_1208 1123807 - 1123001 - | hypothetical protein TERM 1187 1123695 - 1123730 + g 72 -4.2 -5.14563 | overlap 1123698 GCTTCTTTGGTATTT TTATAATCAAAGTGCT CCCA AGAATTTTGATTATTA TTTTTTGCTAAAGCC TERM 1188 1123698 - 1123727 + g 73 -5.9 -4.67552 | overlap 1123695 TCTTTGGTATTTTTA TAATCAAAGTGCT CCCA AGAATTTTGATTA TTATTTTTTGCTAAA TERM 1189 1125411 - 1125425 + G 74 -8.6 -3.29461 | CTTGGATTATCACTT TACCAG CCG CTGGTA TTATGGCAGCACTTG CJJ81176_1209 1123949 - 1125475 + | phosphate transporter family protein TERM 1190 1125484 - 1125498 + T 78 -4.4 -5.41359 | overlap 1125473 AATTTAAGTAAAGCT TATTTT TCT AAAATA TTTTTTCCTTTAATT CJJ81176_1210 1126661 - 1125483 - | dihydroorotase TERM 1191 1125563 - 1125577 + g 71 -5.8 -4.37199 | opp_overlap 1125559 1125557, overlap 1125559 1125567 CAGAATAAAGAGAAC TTTTTG GAG CAAAAA TTTCTTCATTCTCAT gpsA 1127564 - 1126671 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase gatB 1128982 - 1127564 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 1192 1128918 - 1128930 + g 77 -4.9 -5.20783 | opp_overlap 1128907 GAAGTTGCGCATGAG CAAAA GAT TTTTG TTTTTGTATTTAACT TERM 1193 1129187 - 1129176 - g 70 -5.8 -4.33165 | opp_overlap 1129175 CTAAAGTTATGAAAA CACC TAAG GGTG ATGATATTAGTGTAT luxS 1129097 - 1129591 + | S-ribosylhomocysteinase TERM 1194 1130338 - 1130326 - g 74 -3.4 -5.48163 | opp_overlap 1130326 1130337, overlap 1130285 1130337 AAACAAACCAAAAAA GCTT GTTTA AAGC TTTTAAAAGCCTTTG CJJ81176_1214 1129903 - 1130895 + | 2OG-Fe(II) oxygenase family oxidoreductase CJJ81176_1215 1130888 - 1131676 + | NLPA family lipoprotein metE 1131688 - 1133952 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 1195 1134040 - 1134059 + G 82 -7.9 -4.38712 | opp_overlap 1134039 GCTATCTTAGATGAT TTAGGGC AATTAA GCCCTAA TTTTATCAGCGTAAC metF 1133962 - 1134810 + | 5,10-methylenetetrahydrofolate reductase CJJ81176_1218 1134978 - 1134832 - | hypothetical protein atpB 1135700 - 1135020 - | F0F1 ATP synthase subunit A radA 1137109 - 1135769 - | DNA repair protein RadA ftsY 1137975 - 1137109 - | signal recognition particle-docking protein FtsY TERM 1196 1137627 - 1137649 + g 77 -5.7 -4.99035 | AAGTATCACACGCTC CTAAAATCA CTTTT TGATTTTGG TTTTTGTATAAATAA TERM 1197 1137978 - 1137968 - G 72 -2.6 -5.40072 | CCTTTTTTAAAAAAA TTAA ACA TTAA AGTATAGCCTTTTGT CJJ81176_1222 1138532 - 1137975 - | putative lipoprotein CJJ81176_1747 1138682 - 1138557 - | hypothetical protein TERM 1198 1139173 - 1139163 - g 89 -4 -5.85425 | opp_overlap 1139163 GAAAGAAAGAAAAAA TGAT AGA ATCA CTTATCGCACTTATA TERM 1199 1139456 - 1139444 - g 78 -3.4 -5.54403 | AAAAAAGAACAAAAA CTTC AGCAA GAAG AAGAAAAACTAAAAG CJJ81176_1223 1139162 - 1140715 + | phosphodiesterase TERM 1200 1140941 - 1140931 - g 74 -3.2 -5.38321 | overlap 1140924 AAATATTATAAAAAA GACA TTA TGCC TTATTTTAAAAAACA CJJ81176_1224 1140724 - 1141281 + | DedA family protein TERM 1201 1142370 - 1142384 + T 70 -3.6 -5.22039 | GGAGATTTGCTCAAT TTTATC TTA GATGAA TTTTTTAAATTTAAA yihY 1143290 - 1142484 - | YihY family protein glcD 1144676 - 1143294 - | glycolate oxidase, subunit GlcD CJJ81176_1227 1145389 - 1144679 - | hypothetical protein CJJ81176_1228 1145526 - 1146686 + | M24/M37 family peptidase CJJ81176_1229 1146886 - 1146683 - | hypothetical protein TERM 1202 1146730 - 1146748 + g 95 -8.2 -5.63236 | opp_overlap 1146730 TGATTAAAGAATTTA GAAGAGTT GCA AGCTCTTC TTTTTCTTTTTCACT CJJ81176_1230 1147568 - 1146888 - | hypothetical protein ribE 1148143 - 1147532 - | riboflavin synthase subunit alpha TERM 1203 1148047 - 1148068 + gr 81 -7.3 -4.67641 | overlap 1148063 CATTTACGGCTATGC TATCGCCAA GATT TGGGCGATA TTTTGCTTTTAAGCT CJJ81176_1232 1150692 - 1148152 - | hypothetical protein TERM 1204 1150096 - 1150108 + g 76 -7.7 -4.02456 | opp_overlap 1150096 CTCGTAGTTTATATA GCTTG TAT CAAGC TTTATGATAATATTT groES 1150854 - 1151114 + | co-chaperonin GroES TERM 1205 1151584 - 1151559 - g 76 -2.7 -5.63645 | gap 1 GTAAAAGATAAAAAA GAAATTGCA-CA AGT TGCTACAATCTC AGCCAACTCTGATGA TERM 1206 1152243 - 1152225 - g 70 -3.9 -5.05601 | TATGACAGAGAAAAA TTACAAG AAAGA CTTGCAA AATTAAGTGGTGGTG groEL 1151136 - 1152773 + | chaperonin GroEL TERM 1207 1152796 - 1152812 + T 82 -10.9 -2.74514 | overlap 1152788 TCTAACCTCTTATCA GCAAGGA TTT TCCTTGC TGATTACCAATTTAA CJJ81176_1235 1153877 - 1152816 - | sensor histidine kinase TERM 1208 1153132 - 1153149 + g 79 -8.5 -3.93597 | overlap 1153120 GGAGCAAAAATATTT GCTTGAT TTAA ATCAAGC TTTAGTGTAATTTTT TERM 1209 1153960 - 1153994 + r 79 -5.9 -5.03314 | AAAAAAATACCTGTA GTTGTTAGGTAGATT AATAA AATTTGCCTAATGAC TTTTTTAGCCATAGC CJJ81176_1236 1154664 - 1153999 - | DNA-binding response regulator CJJ81176_1237 1154812 - 1155411 + | hemerythrin family non-heme iron protein CJJ81176_1238 1155422 - 1155670 + | hypothetical protein TERM 1210 1155701 - 1155675 - T 100 -11.1 -5.95449 | opp_overlap 1155674 1155673 AAACAAAATAAAAAA CTTTATCACAA TTTTT TTGTGATAAAG ACTTATTAATTTTTT CJJ81176_1240 1157100 - 1155928 - | sensor histidine kinase TERM 1211 1156656 - 1156671 + g 77 -4.8 -5.19916 | CAAGCTTTCCTTGGG CAAATT TATC AATTTG TTTTTTAAGTCTTTT CJJ81176_1241 1157846 - 1157172 - | DNA-binding response regulator TERM 1212 1157894 - 1157918 + r 100 -10.1 -5.27335 | opp_overlap 1157890 1157894 1157897 1157902 TTAAACTAAAATTTA TAACGAAAGGA AAA TCCTTCCGTTA TTTTTATTTAAGCAC TERM 1213 1157918 - 1157894 - R 88 -12.3 -2.82666 | opp_overlap 1157894, overlap 1157890 1157897 1157902 TTAAACTAAAATTTA TAACGAAAGGA AAA TCCTTCCGTTA TTTTTATTTAAGCAC TERM 1214 1157915 - 1157897 - R 82 -9.6 -3.53787 | opp_overlap 1157894, overlap 1157894 1157890 1157902 AACTAAAATTTATAA CGAAAGGA AAA TCCTTCCG TTATTTTTATTTAAG htrA 1159340 - 1157922 - | protease DO TERM 1215 1159143 - 1159123 - G 90 -6.9 -5.55664 | opp_overlap 1159123, overlap 1159108 GGATCATTAAAAAAA TCATCCAAA GGG CTTGGACGA TTTGCTCTTGTAATA dnaJ-1 1159541 - 1160434 + | co-chaperone protein DnaJ CJJ81176_1244 1160450 - 1160824 + | MerR family transcriptional regulator CJJ81176_1245 1160831 - 1162456 + | sodium/hydrogen exchanger family protein CJJ81176_1246 1162466 - 1162798 + | hypothetical protein CJJ81176_1247 1162795 - 1163415 + | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein glyS 1163471 - 1165465 + | glycyl-tRNA synthetase subunit beta TERM 1216 1165800 - 1165782 - g 72 -2.5 -5.46706 | AGTTGAAAACAAAAA GATTTTT CCACC AAAAACC GTACAAGAACGCATC CJJ81176_1249 1165549 - 1166283 + | M24/M37 family peptidase TERM 1217 1166532 - 1166551 + G 73 -3.7 -5.1861 | CTTGAATTAAGGCCT GAAATTT TTTCTC AAATTTC TTTTTTCGTCATAGA CJJ81176_1250 1166280 - 1167230 + | hypothetical protein CJJ81176_1251 1168201 - 1167227 - | Ppx/GppA family phosphatase TERM 1218 1168000 - 1167984 - G 83 -8.7 -4.07568 | opp_overlap 1167982 1167984 CTTGCCTTTCTAAAA GCTGCAG TCG CTACAGC TCTTGCTTTGCTTAA TERM 1219 1168859 - 1168836 - g 76 -8.9 -3.52113 | opp_overlap 1168835, overlap 1168829 1168837 TTGCAAAATTTAGAA CTCTGTGCC AAAAAA GGCACAGAA CTTGGCTTAAAAGTA TERM 1220 1168858 - 1168837 - g 78 -10.2 -2.70786 | opp_overlap 1168835, overlap 1168829 1168836 TGCAAAATTTAGAAC TCTGTGCC AAAAAA GGCACAGA ACTTGGCTTAAAAGT pdxJ 1168257 - 1169045 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 1221 1169837 - 1169815 - g 76 -6.4 -4.55383 | AATTTACAAAAAGAA TTGCTTTTAA ATT TTAAAGGCAA GGGCGTTTATCTACC TERM 1222 1169866 - 1169876 + G 72 -6.8 -4.08216 | overlap 1169872 1169873 1169875 CCCTATCCTTTAGTA GCTG ATA CAGC TTTTACCAAGGCTGG pdxA 1169026 - 1170120 + | 4-hydroxythreonine-4-phosphate dehydrogenase CJJ81176_1254 1170421 - 1170098 - | hypothetical protein CJJ81176_1255 1170679 - 1170482 - | putative periplasmic protein TERM 1223 1170850 - 1170866 + G 85 -7.3 -4.99638 | opp_overlap 1170832 AAAAAAGCTCTTTTT GCACTAG CTC TTAGTGC TTTTTGTATGGGTGT TERM 1224 1172003 - 1171993 - g 78 -4 -5.42265 | TTAAATTATAAAAAA TTTC AAA GAAA AAGTTTAAAAAAGAT CJJ81176_1256 1170823 - 1172022 + | transporter, putative CJJ81176_1257 1172078 - 1172398 + | hypothetical protein TERM 1225 1172448 - 1172428 - f 83 -8.4 -4.17516 | CTCAAACTACACAAA CGAGAATT CCAAT AATTCTCG TAAAATTTCTCATAA hemE 1172578 - 1173600 + | uroporphyrinogen decarboxylase TERM 1226 1173916 - 1173900 - g 95 -8.1 -5.56264 | GCTAAAGATAAAAAA TTGCTTA TTT TAAGCAA TGGCACAGCTGTATT CJJ81176_1259 1173597 - 1174499 + | radical SAM domain-containing protein CJJ81176_1260 1175692 - 1174496 - | hypothetical protein TERM 1227 1175030 - 1175014 - G 72 -6.7 -4.18494 | CATTTTTATTGAAAA TTTTATC CTT GATAAAA ATCAAATGAAAGTCA uvrC 1177496 - 1175694 - | excinuclease ABC subunit C TERM 1228 1175840 - 1175858 + g 74 -2.4 -5.54885 | overlap 1175842 CTAAATTTGCAAGCT TAGAACTT TTC AAGTCCTG TTTTTTCTTAGTATT CJJ81176_1262 1177983 - 1177489 - | hypothetical protein CJJ81176_1263 1177987 - 1178118 + | hypothetical protein TERM 1229 1178932 - 1178922 - g 70 -5.4 -4.60041 | ATTTATGTTTAAAAA TACC TTA GGTA TCGATCTTATCAGCA TERM 1230 1179288 - 1179300 + G 73 -9.1 -2.55847 | overlap 1179287 TTATCGTCATCCTTT CCCTG GGC CAGGG CTTGCTATACGCATT TERM 1231 1179414 - 1179430 + G 72 -6.5 -4.28254 | GTATGATAAAACTTG GCAAGCA TTT TGCGTGC TTTTAAATGTTAAAA guaA 1178122 - 1179657 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1232 1179666 - 1179714 + F 83 -8.6 -4.15788 | gap 1, opp_overlap 1179692 1179693, overlap 1179679 GGAATAATCCATTTT TTCTAGCTCTTATTTTTATTATA AAAT TTTTATAAAAATAAG-GCTAGAA TTTATTCAAGAAATT TERM 1233 1179872 - 1179852 - g 100 -8.3 -5.71983 | opp_overlap 1179852, overlap 1179855 GGAATGATAAAAAAA GTATGCCAA GTG TTGGCATGC TTGTGGAATTTAGAA TERM 1234 1179852 - 1179872 + G 83 -10.5 -3.39668 | opp_overlap 1179852 1179855 GGAATGATAAAAAAA GTATGCCAA GTG TTGGCATGC TTGTGGAATTTAGAA TERM 1235 1179869 - 1179855 - g 77 -8.6 -3.5694 | opp_overlap 1179852, overlap 1179852 ATGATAAAAAAAGTA TGCCAA GTG TTGGCA TGCTTGTGGAATTTA CJJ81176_1265 1179743 - 1181203 + | hypothetical protein purD 1181443 - 1182693 + | phosphoribosylamine--glycine ligase CJJ81176_1267 1182690 - 1183142 + | hypothetical protein TERM 1236 1183154 - 1183168 + G 70 -8.6 -2.66272 | overlap 1183150 1183149 GTAAATTTTCCCTAT TGCTAG GAA CTAGCA TAGCTTTAAATGCAG CJJ81176_1268 1183153 - 1185180 + | organic solvent tolerance protein, putative pnp 1185250 - 1187409 + | polynucleotide phosphorylase/polyadenylase TERM 1237 1187451 - 1187476 + G 85 -8.5 -4.56314 | opp_overlap 1187451 CCTTTTTTTGACAAA GATTCTAAAAT CTTA ATTTTAGGATC TTTTCCTTCTATTAA CJJ81176_1270 1187406 - 1187888 + | hypothetical protein CJJ81176_1271 1187946 - 1188155 + | hypothetical protein TERM 1238 1188151 - 1188167 + T 70 -5.1 -4.71223 | opp_overlap 1188151, overlap 1188146 CAAGAAAAGAAAAAA GCTAGCT TAC ATCTAGC TTTTGTGTGTTATCC TERM 1239 1188167 - 1188151 - T 100 -5.1 -5.92399 | opp_overlap 1188151 1188146 CAAGAAAAGAAAAAA GCTAGCT TAC ATCTAGC TTTTGTGTGTTATCC CJJ81176_1272 1188814 - 1188152 - | hypothetical protein CJJ81176_1273 1190016 - 1188832 - | multidrug resistance efflux transporter, authentic frameshift TERM 1240 1189255 - 1189245 - G 78 -4 -5.40072 | overlap 1189248 TTGGTGCGAAAAAAA GATT GCT AATC CCATTTGCAGCCACC CJJ81176_1274 1190070 - 1190525 + | low molecular weight phosphotyrosine protein phosphatase family protein TERM 1241 1190623 - 1190649 + F 100 -9.5 -4.93288 | opp_overlap 1190622 TCCTTAAAATTACAC GCCTAGCTTAA ATCCC TTTAGCTAGGC TTTTCTTTAGATGTT porA 1190777 - 1192051 + | major outer membrane protein TERM 1242 1192075 - 1192093 + T 100 -12.4 -5.64274 | opp_overlap 1192055 CAAGTCTAACTTCAA GGCGGAGT TTT GCTCCGCC TTTTTTTATGCCTGA TERM 1243 1192165 - 1192137 - T 72 -3.3 -5.38951 | gap 1 AATTTATATAAAAAA TTTTCCC-AAGC TAAAAC GCTTTAGGAAAA TTAAGACTTAAACCA dnaJ-2 1193290 - 1192166 - | co-chaperone protein DnaJ racR 1193447 - 1194118 + | DNA-binding response regulator TERM 1244 1194444 - 1194470 + G 70 -6 -4.32049 | opp_overlap 1194444 AAAATATCATAGCAA TCTTTATTTTGA TGT TCAATGTAAAGA TTTTGATGGCTTGTA racS 1194175 - 1195350 + | sensor histidine kinase recR 1195350 - 1195922 + | recombination protein RecR hydD 1196455 - 1195919 - | hydrogenase maturation protease HydD hydC 1197168 - 1196452 - | quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit hydB 1198870 - 1197155 - | quinone-reactive Ni/Fe-hydrogenase, large subunit hydA 1199955 - 1198873 - | quinone-reactive Ni/Fe-hydrogenase, small subunit mnmC 1201973 - 1200132 - | 5-methylaminomethyl-2-thiouridine methyltransferase TERM 1245 1200703 - 1200692 - G 71 -3 -5.31275 | opp_overlap 1200692 TCTCATCATAAAAAA CAAA ATCT TTTG TATCTGCACCCATAG TERM 1246 1201330 - 1201342 + g 72 -2.7 -5.34555 | overlap 1201325 ATCATTTCTCTTTTT CTAAA ACC TTTGG TTTTTTCTACTCTAA CJJ81176_1285 1203949 - 1201970 - | N-acetylmuramoyl-L-alanine amidase CJJ81176_1286 1205040 - 1203949 - | 2-nitropropane dioxygenase family oxidoreductase tyrS 1206242 - 1205037 - | tyrosyl-tRNA synthetase TERM 1247 1205353 - 1205369 + g 76 -5.2 -5.07567 | opp_overlap 1205353 TCCGTAATCTCTAAA GCTAAA TTTTC TTTAGC TTTTTTAGGATGTAA CJJ81176_1288 1208425 - 1206254 - | RelA/SpoT family protein TERM 1248 1207450 - 1207463 + g 74 -5.3 -4.86731 | AAAGTGTGGTATGTA TGGTT TGAT AACCA TTTTGTTTAGGCAAG rpoZ 1208657 - 1208433 - | DNA-directed RNA polymerase subunit omega pyrH 1209387 - 1208668 - | uridylate kinase CJJ81176_1291 1210632 - 1209439 - | M24/M37 family peptidase TERM 1249 1210633 - 1210612 - G 100 -3.8 -6.32976 | AAAAAAACAAAAAAA GATAAGAA TATTTT TTCTCATC TTTTAACCTTAAACA CJJ81176_1292 1211387 - 1210629 - | cell division protein FtsX, putative lolD 1212087 - 1211422 - | lipoprotein releasing system ATP-binding protein LolD TERM 1250 1211778 - 1211762 - G 72 -8.1 -3.28791 | ACTTTTTTGCTATAA CCTTTAA TCA TTAAAGG CAACATAACATTTTT trmB 1213335 - 1212157 - | tRNA (guanine-N(7))-methyltransferase TERM 1251 1212550 - 1212568 + g 71 -3.2 -5.252 | ATCTTCATATTTGCT TGAAATTT CTA AATTTTCA TTTTTTCTAAGACTA TERM 1252 1212720 - 1212730 + g 80 -6.8 -4.82901 | overlap 1212717 CTTTCCCAATAACTC GCCT ATG AGGC TTTTTATCCCAAGGA TERM 1253 1213167 - 1213185 + g 77 -4.6 -5.21709 | opp_overlap 1213170, overlap 1213168 GTTTATCGCCTTTAA TCACAAAA CCA TTTTGTGC TTTTTTAATCTGCAG TERM 1254 1213168 - 1213184 + g 77 -8.1 -3.72302 | opp_overlap 1213170, overlap 1213167 TTTATCGCCTTTAAT CACAAAA CCA TTTTGTG CTTTTTTAATCTGCA CJJ81176_1295 1214567 - 1213335 - | fibronectin type III domain-containing protein TERM 1255 1214153 - 1214179 + gr 78 -10.2 -2.63257 | opp_overlap 1214152 1214156, overlap 1214158 1214170 1214170 CAGCTTGAACAAAAG GAACAGCTTCAA GTC TTGGAGCTGTGC TCACTTCTATAACCT TERM 1256 1214176 - 1214156 - GR 79 -8.3 -3.82261 | opp_overlap 1214153 1214158 1214170 1214170, overlap 1214152 CTTGAACAAAAGGAA CAGCTTCAA GTC TTGGAGCTG TGCTCACTTCTATAA CJJ81176_1296 1215483 - 1214515 - | ribosomal large subunit pseudouridine synthase A CJJ81176_1297 1215561 - 1216661 + | rod shape-determining protein RodA, putative TERM 1257 1216757 - 1216743 - f 70 -7.8 -3.25942 | opp_overlap 1216743 AGTTGGTTAGAGCAA CCGGCT CAT AACCGG TTGGTCGCAGGTTCG TERM 1258 1217457 - 1217470 + G 78 -6.7 -4.57205 | overlap 1217456 GAGTCTTTATTTTAT CCATC AATG GATGG TTTATTTAAATTTTT CJJ81176_1300 1217115 - 1218458 + | TrkH family potassium uptake protein CJJ81176_1301 1218469 - 1219119 + | potassium uptake protein TrkA, putative TERM 1259 1219130 - 1219165 + T 78 -3.4 -5.68438 | gap 1, opp_overlap 1219120 1219132, overlap 1219132 ACTAAGCAAGATTTA AAGCCTTGCAAGCCTTT ACA AAACGCTT-TAAGGCTG TTTTTTCTTTGGTAG TERM 1260 1219132 - 1219163 + T 71 -6 -4.47052 | gap 1, opp_overlap 1219120 1219132, overlap 1219130 TAAGCAAGATTTAAA GCCTTGCAAGCCTTT ACA AAACGCTT-TAAGGC TGTTTTTTCTTTGGT CJJ81176_1302 1219787 - 1219116 - | hypothetical protein TERM 1261 1219798 - 1219812 + r 71 -8.6 -2.95774 | opp_overlap 1219788 1219785 1219798, overlap 1219788 1219800 ATCATCTCTTTTAAA GAGTGT TAA ACACTC TATCTCCTGCATCTC TERM 1262 1219812 - 1219798 - R 77 -8.6 -3.5393 | opp_overlap 1219788 1219798 1219800, overlap 1219788 1219785 ATCATCTCTTTTAAA GAGTGT TAA ACACTC TATCTCCTGCATCTC upp 1220419 - 1219793 - | uracil phosphoribosyltransferase TERM 1263 1220320 - 1220307 - G 86 -5.3 -5.54079 | overlap 1220280 TCAAAAAGCAAAAAA GATGA AATT TCATC GATTAACATACGAAA CJJ81176_1304 1221651 - 1220416 - | NADP-dependent malic enzyme, truncation TERM 1264 1220572 - 1220586 + g 72 -4.3 -5.0133 | TCCAAATTCTAAAGT GCTTA AATTA TAAGC TTTTTTAACCGCATC gltX 1223044 - 1221653 - | glutamyl-tRNA synthetase CJJ81176_1306 1223109 - 1223924 + | hypothetical protein TERM 1265 1223965 - 1223934 - T 95 -11.9 -3.79689 | opp_overlap 1223934 1223940, overlap 1223928 1223940 AGATAAAAATTACAA TTAAAATTTCCCT TATAAT AGGGAAATTTTAA TGTCTTGCAAGATAA TERM 1266 1223934 - 1223965 + T 90 -11.9 -3.07344 | opp_overlap 1223934 1223928 1223940, overlap 1223940 AGATAAAAATTACAA TTAAAATTTCCCT TATAAT AGGGAAATTTTAA TGTCTTGCAAGATAA TERM 1267 1223940 - 1223959 + T 74 -6.5 -4.43213 | opp_overlap 1223934 1223928 1223940, overlap 1223934 AAATTACAATTAAAA TTTCCCT TATAAT AGGGAAA TTTTAATGTCTTGCA TERM 1268 1223959 - 1223940 - T 74 -6.5 -4.53685 | opp_overlap 1223940 1223934, overlap 1223934 1223928 AAATTACAATTAAAA TTTCCCT TATAAT AGGGAAA TTTTAATGTCTTGCA accC-2 1225293 - 1223962 - | biotin carboxylase accB 1225750 - 1225295 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 1269 1225480 - 1225470 - G 76 -6.8 -4.38712 | CCTACTTTTACAAAA GGTG CTG CACC TGGGCTTGGAGCTTG TERM 1270 1225967 - 1225943 - g 71 -7.9 -3.43689 | overlap 1225934 1225958 AAAATGGCATTAGAA CGCAAGATGAT CGA ACCATTTTGCG AAGCAAATATAGGAA TERM 1271 1226442 - 1226408 - g 74 -2.1 -5.59879 | gap 1 TATAAAGATAAAAAA GGCAAGTATCAAGCTC AAAC GGGCATAAC-CTTGCC AAGAATTTTAAAATA dcd 1225898 - 1226458 + | deoxycytidine triphosphate deaminase flmA 1226507 - 1227511 + | polysaccharide biosynthesis protein TERM 1272 1227878 - 1227859 - g 70 -3.5 -5.01732 | AAGGCTTGTAAAAAA TAGCACC GATATA GGAGCTA TTAGCGTGGTGGATT CJJ81176_1311 1227512 - 1228642 + | aminotransferase TERM 1273 1229313 - 1229302 - g 70 -4.4 -4.96028 | GTTTAAAAAAAAGAA GGTA TAAT TACC GCTTTGTCATCATTC CJJ81176_1312 1228635 - 1229393 + | hypothetical protein TERM 1274 1229473 - 1229463 - g 86 -3.2 -5.83822 | CACACCCAAAAAAAA CACT CTA AGCG ATAAAGTTGCCTTGC CJJ81176_1313 1229404 - 1229943 + | hypothetical protein TERM 1275 1229933 - 1229943 + T 71 -2.6 -5.52384 | opp_overlap 1229926 1229933, overlap 1229926 TTTTAGAATATAAAC TTAT TTT ATAA TTTTTTTAATAAAGC CJJ81176_1314 1230834 - 1229938 - | hypothetical protein TERM 1276 1230661 - 1230682 + g 71 -6.7 -3.96327 | opp_overlap 1230645 1230661, overlap 1230665 ATCATTCAGAAATAA TAAATAAGC ATTA GCTTGTTTA TTTATACTAAAACCT TERM 1277 1231196 - 1231206 + G 76 -2.6 -5.52986 | AAATGCACCGTAGGA TTAT TAA ATAA TTTTTTTCGTAAACT TERM 1278 1231511 - 1231501 - g 78 -4 -5.45056 | CGAAAAAAAAATAAA TTAC TAT GTAA GATGCTTAGACAAAC CJJ81176_1315 1230977 - 1231696 + | hypothetical protein CJJ81176_1316 1231701 - 1231928 + | hypothetical protein TERM 1279 1232903 - 1232891 - g 76 -3.5 -5.36441 | TTTCCATAGAAAAAA TTAAA AAA TTTAA TCCAACTCATATTTA CJJ81176_1317 1231921 - 1233279 + | hypothetical protein TERM 1280 1233946 - 1233934 - g 81 -3.5 -5.55769 | CCTTACAAGAAAAAA TTAAA ACT TTTAA AAAACAAGGGTTTTT TERM 1281 1234526 - 1234548 + G 93 -5.6 -5.84011 | opp_overlap 1234528, overlap 1234528 CATGAGTGATAAATT AAGCGATAGT GGG ATTATCGCTA TTTTTGTTTTTTCTT TERM 1282 1234528 - 1234546 + G 85 -8.2 -4.48934 | opp_overlap 1234528, overlap 1234526 TGAGTGATAAATTAA GCGATAGT GGG ATTATCGC TATTTTTGTTTTTTC CJJ81176_1318 1233276 - 1234838 + | HAD family phosphatase CJJ81176_1319 1234828 - 1235889 + | 3-oxoacyl-(acyl carrier protein) synthase III CJJ81176_1320 1235889 - 1236110 + | acyl carrier protein, putative TERM 1283 1236105 - 1236129 + T 100 -13.1 -4.64591 | opp_overlap 1236102 AATTTAGCAAAGCTT GATTAAAACCT TTA AGGTTTTAATC TTTTATCTCTAATTC CJJ81176_1321 1236702 - 1236124 - | hypothetical protein TERM 1284 1236211 - 1236237 + g 70 -5.2 -4.59853 | AGAGATGGAATTTTC TTGCATTAAAGA TTT TCTTTTTTGCAA TTTTTCAAGCATTAA TERM 1285 1236595 - 1236585 - G 85 -2.6 -5.93809 | opp_overlap 1236591 TTTTTAGAAAAAAAA TAAT CCT ATTA TGTGGAAAATCTTCA CJJ81176_1322 1237399 - 1238910 + | amino acid adenylation domain-containing protein CJJ81176_1323 1239050 - 1239622 + | acetyltransferase CJJ81176_1324 1239812 - 1239639 - | hypothetical protein TERM 1286 1240103 - 1240091 - g 90 -7.7 -5.31275 | GGGTATCACAAAAAA TTGGC TTT GCCAA ATGAGGGTTATTTAG CJJ81176_1325 1239899 - 1240309 + | formyl transferase domain-containing protein CJJ81176_1326 1240312 - 1240536 + | acyl carrier protein, putative CJJ81176_1327 1241740 - 1240529 - | hypothetical protein TERM 1287 1240613 - 1240639 + g 70 -5.2 -4.59853 | overlap 1240614 AGAGATGGAATTTTC CTGCATAAAAGA TTT TCTTTTTTGCAA TTTTTCAAGCATTAA TERM 1288 1240614 - 1240638 + g 74 -8.7 -3.3543 | overlap 1240613 GAGATGGAATTTTCC TGCATAAAAGA TTT TCTTTTTTGCA ATTTTTCAAGCATTA neuA 1241832 - 1242530 + | acylneuraminate cytidylyltransferase TERM 1289 1242621 - 1242633 + G 71 -7.7 -3.46647 | AAGTTTTGCTTGTTT GCCTT TAG AAGGC TCTTTGATCGATGAA TERM 1290 1243126 - 1243111 - g 81 -6.2 -5.09426 | CCTAATCTTAAAAAA TTGCAA AAAT TTGCAA AATTACATAACAATA CJJ81176_1329 1242514 - 1243338 + | flagellar protein, putative CJJ81176_1330 1243335 - 1243808 + | acetyltransferase hisF-1 1244519 - 1243773 - | imidazoleglycerol phosphate synthase, cyclase subunit TERM 1291 1244024 - 1244039 + g 86 -3.2 -5.94597 | opp_overlap 1244024 CCACAGAAGTTAAAA GAAGCT CTCC AGCTCC TTTTTTTTCATATTC hisH 1245125 - 1244520 - | imidazole glycerol phosphate synthase subunit HisH TERM 1292 1244893 - 1244903 + g 91 -5.4 -5.9873 | opp_overlap 1244893 ATTCCTAAACAAATG CCTA AAA TAGG TTTTTTTTGTACTAA CJJ81176_1333 1246258 - 1245122 - | flagellin modification protein, PseA TERM 1293 1246478 - 1246460 - H 72 -6.2 -4.30933 | opp_overlap 1246458 1246460 TATAAATTGAAGAAA TATATAAT ATA ATTATATA TCATTTTAGTCAGGA neuB 1246516 - 1247547 + | N-acetylneuraminic acid synthetase TERM 1294 1247932 - 1247912 - g 78 -4.1 -5.4148 | CAAAGAATTAAAAAA TGAAAAATT AAT ACTTTTTCA TACTCCAAATATCAC TERM 1295 1248790 - 1248768 - g 80 -6.4 -4.9218 | TATGGAGGAGAAAAA CAAGTAAG AACTCAA CTTACTTG GAACTTATTCCGACA CJJ81176_1335 1247580 - 1249394 + | motility accessory factor TERM 1296 1250556 - 1250520 - g 70 -8.3 -3.15027 | opp_overlap 1250520, overlap 1250519 1250536 ACTGGTTAGCAAAAT TCTTATCTCATAAAAAT ATA ATTTTTATAGGACAAGA TTTAGCTTACAGCAA CJJ81176_1336 1249415 - 1251379 + | PseD TERM 1297 1251553 - 1251535 - g 86 -3.2 -5.85178 | AACATTTAAAAAAAA TTTATCAA AAT CCGATAAA AGAACTTGAAGAAAA TERM 1298 1252812 - 1252799 - g 78 -3.1 -5.53079 | overlap 1252801 AAAAGATATAAAAAA GCCTT TAAA AAAGC TAAAGAAAAAAACAA CJJ81176_1337 1251366 - 1253264 + | PseE TERM 1299 1253290 - 1253267 - T 100 -12.6 -4.28432 | opp_overlap 1253272 1253284 AAGCTTAATCTAAAA CTAAAGAGCA AAAT TGCTCTTTAG AAAGATTATTGTAAT CJJ81176_1338 1255026 - 1253296 - | flagellin TERM 1300 1254746 - 1254764 + g 72 -4.6 -4.90869 | overlap 1254747 GCTTGAGTAGCTTTA GTCTTGAT AGT ATCAAGAA TTTTTAATTGCTCAT TERM 1301 1254747 - 1254763 + g 73 -8.1 -3.53437 | overlap 1254746 CTTGAGTAGCTTTAG TCTTGAT AGT ATCAAGA ATTTTTAATTGCTCA TERM 1302 1255122 - 1255141 + r 72 -7.9 -3.35695 | opp_overlap 1255122 GCTTATAAATAAAAA GCCTAGT ATTTAA ACTAGGC TTGGATTTGTATAAA TERM 1303 1255141 - 1255122 - R 100 -7.9 -5.38054 | opp_overlap 1255122 GCTTATAAATAAAAA GCCTAGT ATTTAA ACTAGGC TTGGATTTGTATAAA CJJ81176_1339 1256930 - 1255200 - | flagellin TERM 1304 1256650 - 1256668 + g 72 -4.6 -4.90869 | overlap 1256651 GCTTGAGTAGCTTTA GTCTTGAT AGT ATCAAGAA TTTTTAATTGCTCAT TERM 1305 1256651 - 1256667 + g 73 -8.1 -3.53437 | overlap 1256650 CTTGAGTAGCTTTAG TCTTGAT AGT ATCAAGA ATTTTTAATTGCTCA CJJ81176_1340 1258839 - 1257013 - | motility accessory factor TERM 1306 1257399 - 1257368 - G 83 -10.4 -3.53012 | opp_overlap 1257379 1257391 TTTTCCCTTTTGAAA GTTGCTAAAATTTT ATTT AAAATTTTAGCACC ACGATTGGTTGTTAA CJJ81176_1341 1260101 - 1258851 - | hypothetical protein ctsG 1260616 - 1260101 - | transformation system protein gcp 1261624 - 1260617 - | O-sialoglycoprotein endopeptidase TERM 1307 1260843 - 1260867 + g 71 -2.3 -5.43621 | opp_overlap 1260861 CCTACAACGCCAAAA TTTTTAAATTT ATA AAGATTAAAAA TTTTTTCTAATTTAT CJJ81176_1344 1263015 - 1261621 - | hypothetical protein dxr 1264087 - 1263017 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase cdsA 1264809 - 1264084 - | phosphatidate cytidylyltransferase TERM 1308 1264608 - 1264584 - G 71 -5.7 -4.43755 | overlap 1264600 ATAACAAAGCTAAAA TCCCAAAAAGC AAA GCTTTATGCGA TAAACTTCCCAAAAT TERM 1309 1264664 - 1264680 + g 70 -8.1 -3.05816 | opp_overlap 1264655 1264664 GAAATATTTTCTAAA GCAAAAA GTT TTTTTGC TTCACTAAAAGATAA TERM 1310 1264680 - 1264664 - G 74 -8.1 -3.58329 | opp_overlap 1264664, overlap 1264655 GAAATATTTTCTAAA GCAAAAA GTT TTTTTGC TTCACTAAAAGATAA TERM 1311 1264746 - 1264735 - G 74 -3 -5.35222 | overlap 1264724 AAAATTGATAAAAAA TTGA TCAA TCAA CGCGATAATAATAAT CJJ81176_1347 1265156 - 1264818 - | hypothetical protein TERM 1312 1265074 - 1265090 + g 71 -8 -3.524 | overlap 1265056 GCAAAACCTTCTTTT GCAAGC TCATT GCTTGC TTGTGTAGCTGGATA CJJ81176_1348 1266465 - 1265158 - | fibronectin/fibrinogen binding protein, putative TERM 1313 1265481 - 1265493 + g 70 -6.3 -4.08058 | overlap 1265481 AATAAAAATTTGCCA CAAGA TCT TCTTG TTTATGATCTTGATT TERM 1314 1266340 - 1266318 - G 71 -7 -3.87994 | overlap 1266321 ATTTAGCTGTATAAA TCACACTCAT TGC ACGAGTGAGA TCAAAAATAAATCTT TERM 1315 1266398 - 1266410 + g 72 -2.7 -5.44119 | TTATCATTGATACGC TTGAT AAA ATCGA TTTTTTTAAACTGAG CJJ81176_1349 1266527 - 1267102 + | putative molybdopterin-guanine dinucleotide biosynthesis protein TERM 1316 1267334 - 1267321 - g 78 -3.1 -5.54403 | overlap 1267315 AAAAAAGAAGAAAAA CAAGA CTTT TCTCG CTTAGCTTTGGCTAA TERM 1317 1267758 - 1267770 + G 76 -3.5 -5.47159 | TGTATCTACGGCTAT TTTAT ATA ATAAA TTTTTATTTGTTCCA pldA 1267099 - 1268088 + | phospholipase A ceuB 1268177 - 1269145 + | enterochelin ABC transporter, permease protein ceuC 1269138 - 1270076 + | enterochelin ABC transporter, permease protein ceuD 1270073 - 1270828 + | enterochelin ABC transporter, ATP-binding protein TERM 1318 1270861 - 1270873 + G 86 -3.4 -5.83822 | AAAATCTTTAGTTTT TGCA TTTTT TGCA TTTTTTTTAAGTCTA TERM 1319 1271184 - 1271174 - g 74 -5.4 -4.91473 | CAATTTAAAAACAAA CCTA GTG TAGG TGGAGTACAGCAAGT CJJ81176_1354 1270841 - 1271833 + | enterochelin ABC transporter, periplasmic enterochelin-binding protein, authentic frameshift TERM 1320 1271843 - 1271861 + F 71 -6.7 -3.85704 | opp_overlap 1271840, overlap 1271840 AAATAATACAACCTC GCAAGGG CTAGT CTCTTGC TTTAATACTTAATAA CJJ81176_1355 1271987 - 1272208 + | hypothetical protein CJJ81176_1356 1272209 - 1272490 + | RelE/ParE family plasmid stabilization system protein TERM 1321 1272467 - 1272497 + T 80 -4.2 -5.55855 | GTGATTTTAGGCATA TATAAAAGTAATCT TTG GGATTGATTTTATA TTTTATTTTTTTAGA TERM 1322 1272740 - 1272762 + T 77 -8.4 -3.54424 | overlap 1272743 GAGACCCGTTAAGAT CTGCACCCTT AGC AGGGGTGTGG TTTCAGCCGCTCACC TERM 1323 1272743 - 1272759 + T 71 -8.7 -2.90813 | overlap 1272740 ACCCGTTAAGATCTG CACCCTT AGC AGGGGTG TGGTTTCAGCCGCTC TERM 1324 1272849 - 1272821 - T 72 -3.1 -5.29742 | overlap 1272824 1272826 ATACAAAAAAATAAA TAATACCTAGCTT AAA AAGCTAGGAAAAA TCAAAGGCTAAGATA TERM 1325 1272846 - 1272824 - T 91 -9.2 -4.65305 | overlap 1272821 1272826 CAAAAAAATAAATAA TACCTAGCTT AAA AAGCTAGGAA AAATCAAAGGCTAAG TERM 1326 1272844 - 1272826 - T 100 -11.8 -3.8648 | overlap 1272824 1272821 AAAAAATAAATAATA CCTAGCTT AAA AAGCTAGG AAAAATCAAAGGCTA CJJ81176_1358 1273404 - 1272850 - | hypothetical protein TERM 1327 1273532 - 1273515 - R 100 -9.9 -5.67711 | CAAAGAAAAGAAAAA GCCCTAT GATT ATAGGGC TTAAGAATTATTTTT nrfA 1275372 - 1273540 - | cytochrome c552 TERM 1328 1273905 - 1273920 + g 72 -6.2 -4.28656 | overlap 1273896 TTTGAGCTTTACGAT GAAGTT CTAA AACTTC TTTTAGCTCTTCACT TERM 1329 1275252 - 1275239 - G 71 -2.3 -5.38326 | overlap 1275240 CTAAGCAAAGAAAAA TCAGC ATTT GCTGC AATGGCATTTTTATT nrfH 1275902 - 1275387 - | cytochrome c-type protein nrfH TERM 1330 1275491 - 1275510 + g 73 -5.8 -4.64334 | gap 1, opp_overlap 1275491 1275490 CCGTTTGAGCAAAAT CTGCATGAC AGC GT-ATGCAG TTTTCTTGCACCATT ppk 1276090 - 1278174 + | polyphosphate kinase TERM 1331 1278203 - 1278177 - T 78 -6.7 -4.72729 | opp_overlap 1278177, overlap 1278172 TAAGGAAAACTAAAA GTTTTTAGGGT TTTAC ACCTTAAAAAC TTTAAACTATGAATT TERM 1332 1278177 - 1278203 + T 79 -8.9 -3.64371 | opp_overlap 1278177 1278172 TAAGGAAAACTAAAA GTTTTTAGGGT TTTAC ACCTTAAAAAC TTTAAACTATGAATT CJJ81176_1363 1279070 - 1278618 - | hypothetical protein TERM 1333 1279405 - 1279390 - g 74 -3.2 -5.39721 | opp_overlap 1279390 CTATGATAGAAAAAA GCGG AGATTTAG CCGC TATTTTAACCAATCT TERM 1334 1279859 - 1279846 - g 71 -2.3 -5.39721 | opp_overlap 1279847 1279848 1279857 1279858 TTATCACAGAAAAAA GGGCT AATG AGGCC TTAAATTCTTTAGGG ruvB 1279119 - 1280126 + | Holliday junction DNA helicase B TERM 1335 1280192 - 1280203 + G 75 -4.4 -5.33848 | ATTTCTTTTGCTTTA CCTT TTTA AAGG TTTTTTACTTGTAAT CJJ81176_1365 1280130 - 1281173 + | hypothetical protein TERM 1336 1281174 - 1281193 + T 93 -10.8 -3.97088 | opp_overlap 1281169 1281174 AAGAATTTAATTTAA CTTGCCTT AAAA AAGGCAAG TTTGATGTTCTAGGC TERM 1337 1281193 - 1281174 - T 85 -10.8 -3.22106 | opp_overlap 1281174, overlap 1281169 AAGAATTTAATTTAA CTTGCCTT AAAA AAGGCAAG TTTGATGTTCTAGGC fumC 1282594 - 1281203 - | fumarate hydratase CJJ81176_1367 1285775 - 1282650 - | serine protease glmS 1287574 - 1285778 - | D-fructose-6-phosphate amidotransferase TERM 1338 1285995 - 1286005 + g 78 -4 -5.45813 | CTAGCAATAAGCTCT TCAA CAT TTGA TTTTGTTTTTTCATA TERM 1339 1286689 - 1286675 - G 71 -8.6 -2.82834 | CATTGCAGCATGATA GCTTGT TCC ACAAGC ACAAAGCGTGATTTC CJJ81176_1369 1289927 - 1287579 - | GlnD family protein CJJ81176_1370 1290071 - 1291135 + | hypothetical protein TERM 1340 1292848 - 1292838 - g 76 -5.4 -5.10154 | AGTGAAAATGAAAAA GCTA GAA TAGC AGGTAATGTGAAAGT TERM 1341 1294145 - 1294159 + G 73 -5.6 -4.53685 | overlap 1294147 TAATAATTTGACTTT GACGCC TTT GGCGTA TTTTAATTATAATTT TERM 1342 1294147 - 1294157 + G 77 -8.2 -3.85899 | overlap 1294145 ATAATTTGACTTTGA CGCC TTT GGCG TATTTTAATTATAAT CJJ81176_1371 1291197 - 1294562 + | serine protease CJJ81176_1372 1294609 - 1295928 + | xanthine/uracil permease family protein CJJ81176_1373 1295942 - 1296385 + | putative nucleotide phosphoribosyltransferase CJJ81176_1374 1296430 - 1297128 + | VacJ family lipoprotein CJJ81176_1375 1297138 - 1297707 + | toluene tolerance protein, putative TERM 1343 1299584 - 1299570 - g 72 -4.2 -5.08169 | opp_overlap 1299572, overlap 1299572 ATAGATCTTAAAAAA CAGCTC AAC GAGCTT GTAAAAAATGATGGA TERM 1344 1299582 - 1299572 - g 72 -6.8 -4.16351 | opp_overlap 1299572, overlap 1299570 AGATCTTAAAAAACA GCTC AAC GAGC TTGTAAAAAATGATG CJJ81176_1376 1297707 - 1300178 + | hypothetical protein CJJ81176_1377 1300811 - 1300209 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 1345 1300349 - 1300337 - G 72 -4.1 -5.06414 | overlap 1300322 CCTTTGGAATAAAAA GGCTA TCA TAACC AAAACCATTTTCACC TERM 1346 1301558 - 1301538 - g 70 -5.6 -4.29396 | opp_overlap 1301538 1301536, overlap 1301529 AATCACTCATGAAAA TGAAAAAA CTCCT TTTTTTCA TCTTATTAAACAAAA CJJ81176_1378 1300978 - 1302279 + | multidrug resistance efflux transporter, putative TERM 1347 1302292 - 1302262 - T 81 -9.3 -3.65786 | gap 1, overlap 1302256 1302286 AAAGAAGAATTAGAA GGCAAAATTAAGAT CTAA ATCT-AATTTTGCC CCGCAAAACCCATTG CJJ81176_1379 1303955 - 1302282 - | iron-sulfur cluster-binding domain-containing protein TERM 1348 1303825 - 1303838 + g 71 -3.1 -5.2197 | AAATTAATCTCAGGG GCATA AATT TGTGC TTTTTGATTTTTATC selA 1304033 - 1305355 + | selenocysteine synthase TERM 1349 1305663 - 1305679 + G 74 -6.7 -4.3534 | AATTTTAAAAATTCT TGATATT AAA AATATCA TTTTAGTGCTTAGCA TERM 1350 1307033 - 1307022 - g 71 -3 -5.19261 | AAATTTATTAAAAAA TCAA AGTC TTGA TGTGCAAAGTATGAA selB 1305352 - 1307157 + | selenocysteine-specific elongation factor TERM 1351 1307547 - 1307532 - g 71 -3.3 -5.28826 | AAATTTTACAAAAAA TGCTA AAGCTG TAGCA CAAAAAGAAACCATG CJJ81176_1382 1307206 - 1307916 + | hypothetical protein TERM 1352 1308360 - 1308349 - g 72 -4.4 -5.06103 | ACAATTCTCAAAAAA CAAG TCTT CTTG CAAGAACAGCTTATC CJJ81176_1383 1307922 - 1308473 + | putative lipoprotein TERM 1353 1308483 - 1308462 - T 75 -7.4 -4.0865 | opp_overlap 1308462, overlap 1308457 TTTAAGAAAAGACAA TCAAGAGT ATAAAA ACTCTTGA TTTTAAGAATTATTA TERM 1354 1308462 - 1308483 + T 75 -7.4 -4.16921 | opp_overlap 1308462 1308457 TTTAAGAAAAGACAA TCAAGAGT ATAAAA ACTCTTGA TTTTAAGAATTATTA fldA 1308987 - 1308496 - | flavodoxin FldA CJJ81176_1385 1309682 - 1308987 - | hypothetical protein CJJ81176_1386 1309999 - 1309685 - | hypothetical protein TERM 1355 1310620 - 1310606 - g 72 -4.2 -5.1287 | TCCATACTCAAAAAA GAGATC CAA GAACTC ATCTAAGAAGTAATA TERM 1356 1310974 - 1310984 + G 70 -5.4 -4.54727 | GATATAGAAAAACTT GGAT TTA ATCC TTTTGATTTAACAAA katA 1310170 - 1311594 + | catalase TERM 1357 1311631 - 1311592 - f 74 -5.3 -4.86033 | gap 1, opp_overlap 1311595, overlap 1311596 AAAGCTTTAGAAAAA TAATTTTTA-CTTGCCAC TTTTG GTGGCAAACTAAAGATTA TAATAATTAAGGAAA CJJ81176_1388 1311651 - 1312121 + | ankyrin repeat-containing protein TERM 1358 1312098 - 1312121 + T 70 -5.5 -4.68528 | opp_overlap 1312096 1312098 ATGAGCCTAAAAATA CTAAAATTT ATCAAA AAATTTTAG TTATTTTTTAAATTT CJJ81176_1389 1312778 - 1312122 - | hypothetical protein TERM 1359 1312814 - 1312800 - H 78 -4.4 -5.4505 | opp_overlap 1312800 GCCTTCAATAAAAAA TTAATA TAA TATTAA ATTCTACTCTTTATA CJJ81176_1390 1312946 - 1313308 + | endoribonuclease L-PSP, putative CJJ81176_1391 1313312 - 1314751 + | cryptic C4-dicarboxylate transporter DcuD, authentic frameshift metC 1314764 - 1315927 + | cystathionine beta-lyase TERM 1360 1315984 - 1316006 + G 88 -7.7 -5.00616 | overlap 1315986 ACTAGCAGACTCATG GAGCACGCA GGAAA TGCGTGCTA TTTTTTGCGAACAAA TERM 1361 1315986 - 1316004 + G 95 -10.3 -4.13561 | overlap 1315984 TAGCAGACTCATGGA GCACGCA GGAAA TGCGTGC TATTTTTTGCGAACA TERM 1362 1316973 - 1316985 + G 72 -7.7 -3.57144 | opp_overlap 1316973 1316972 TAGCAAATATGAAAT TCGCT CTT AGCGA TTTAGAAGTAAAAAA purB-2 1315937 - 1317304 + | adenylosuccinate lyase TERM 1363 1318562 - 1318549 - g 70 -5.3 -4.56133 | TTTGAAGAATTAAAA GCTAA ATTT TTAGC CAATGCACAAATTTA TERM 1364 1318629 - 1318604 - g 78 -6.3 -4.75309 | CTAAAGCTAACAAAA TTCTAGATCAA ATCA TCAATCTAGAA AATTTAAACCACTTT CJJ81176_1394 1317313 - 1318653 + | MmgE/PrpD family protein TERM 1365 1318658 - 1318684 + F 95 -11.1 -3.95042 | opp_overlap 1318657 1318655 1318658 1318682 TTTCTTTTTAAATAT TTATCCTTCTT TTTAC AAGAAGGATAA TTTCATTACACTTTT TERM 1366 1318684 - 1318658 - f 83 -11.1 -2.60496 | opp_overlap 1318658, overlap 1318657 1318655 1318682 TTTCTTTTTAAATAT TTATCCTTCTT TTTAC AAGAAGGATAA TTTCATTACACTTTT CJJ81176_1395 1318846 - 1318959 + | feoA family protein TERM 1367 1319203 - 1319170 - gf 76 -2.7 -5.64873 | gap 1, opp_overlap 1319176 GCGAAGAAGAAAAAA TCACACGTCATTTT TTAAATC AAAATGAC-TATGA TGTTATTGTTAATGT CJJ81176_1396 1318956 - 1319714 + | ferrous iron transport protein B, authentic frameshift feoB 1319689 - 1320798 + | ferrous iron transport protein B CJJ81176_1398 1322288 - 1320795 - | hydrogenase, (NiFe)/(NiFeSe) small subunit family TERM 1368 1321118 - 1321131 + g 76 -3.9 -5.40474 | CATCAAAATTTTGCT CTATA AAAG TATAG TTTTTTTCAAAGGAT fabI 1323116 - 1322292 - | enoyl-(acyl carrier protein) reductase tpiA 1323791 - 1323120 - | triosephosphate isomerase pgk 1324990 - 1323788 - | phosphoglycerate kinase gapA 1325991 - 1324993 - | glyceraldehyde 3-phosphate dehydrogenase A nadD 1326051 - 1326596 + | nicotinate (nicotinamide) nucleotide adenylyltransferase CJJ81176_1404 1326624 - 1326950 + | hypothetical protein TERM 1369 1326947 - 1326979 + T 100 -10.9 -4.63542 | opp_overlap 1326954, overlap 1326954 TAAAAAAGGCAGGGT TTAAAAAGGCTAA AATTTAA TTAGCCTTTTTAA TTTTTAGAGATTATC TERM 1370 1326954 - 1326972 + T 77 -4.6 -5.18355 | opp_overlap 1326954, overlap 1326947 GGCAGGGTTTAAAAA GGCTAA AATTTAA TTAGCC TTTTTAATTTTTAGA CJJ81176_1405 1327360 - 1326983 - | hypothetical protein algC 1328777 - 1327407 - | phosphomannomutase/phosphoglucomutase fliL 1328899 - 1329435 + | flagellar basal body-associated protein FliL acpS 1329435 - 1329782 + | 4'-phosphopantetheinyl transferase TERM 1371 1329757 - 1329777 + T 100 -12.7 -4.21737 | overlap 1329752 1329749 ATGATAATGGTTTTG CTATAGCCA TAG TGGCTATAG TTTGATTATTTTCCT CJJ81176_1409 1330202 - 1329783 - | hypothetical protein TERM 1372 1330118 - 1330103 - G 71 -6.8 -3.90318 | opp_overlap 1330101 1330103 GTACTATTGCACAAA GCAGGA TAGT CCCTGC TAATTTTTCTTTTAA CJJ81176_1410 1331560 - 1330199 - | cytochrome P450 family protein TERM 1373 1331515 - 1331483 - G 73 -8.7 -3.14878 | gap 1, opp_overlap 1331482 CCCGTCAAGCCAAGA TCTACGCT-TTAAC AAAAAA GTTAAGAGCGTAGA AGCTTTATTTTTATA CJJ81176_1411 1332678 - 1331557 - | hypothetical protein TERM 1374 1332232 - 1332221 - G 72 -4.4 -5.16472 | AAAAATCCTAAAAAA CATC CTAT GATG ATAGCTAAAGAAAAA kpsS 1333934 - 1332750 - | capsule polysaccharide export protein KpsS kpsC 1336000 - 1333931 - | capsule polysaccharide export protein KpsC CJJ81176_1414 1336509 - 1335997 - | adenylylsulfate kinase CJJ81176_1415 1337260 - 1336499 - | putative sugar-1-phosphate nucleotidyltransferase TERM 1375 1337181 - 1337201 + g 71 -6.9 -3.93367 | overlap 1337196 TTTTTATTCTTATAC TCAACCATA CAC TTTGGTTGA TCTTTTGTTAAAGGC CJJ81176_1416 1337864 - 1337262 - | class I glutamine amidotransferase, putative CJJ81176_1417 1340194 - 1337855 - | hypothetical protein TERM 1376 1338184 - 1338174 - G 70 -4 -4.93296 | CTATGATTATAAAAA GAAA AAA TTTC ATCAGCATTACAAAG TERM 1377 1338515 - 1338554 + g 82 -11 -2.65112 | opp_overlap 1338519, overlap 1338499 1338519 TTTAAGTAAAGCATT TAAAGCCTTTGTTTTTTC TTCT GATAAAATAAGGGCTTTA TCCTGTAAATAAATT TERM 1378 1338519 - 1338550 + g 74 -7.4 -4.02334 | opp_overlap 1338519, overlap 1338515 AGTAAAGCATTTAAA GCCTTTGTTTTTTC TTCT GATAAAATAAGGGC TTTATCCTGTAAATA TERM 1379 1339562 - 1339506 - G 72 -6.7 -4.12901 | opp_overlap 1339505 TAAAATCTATATAAA GCTTCTTTTGGTAAAGAATGAAATAAA TTA TTTTTTTCATGCATAACCAAAGGACGC ACTTGTAAGCAAAAA TERM 1380 1340110 - 1340128 + g 80 -2.4 -5.81622 | opp_overlap 1340111, overlap 1340111 CAAGCGAAGTTAAAA CCAAAGGT AGA ACTTTTGC TTTTTTTAATTTTGT CJJ81176_1418 1340988 - 1340209 - | putative methyltransferase CJJ81176_1419 1341795 - 1341022 - | putative methyltransferase CJJ81176_1420 1343541 - 1341847 - | putative sugar transferase TERM 1381 1342554 - 1342579 + gr 70 -8.4 -2.51725 | overlap 1342553 AAAAAGGATATTGCA CCCTATCTAA TATTTT TTGGATAGGG ATATTACTATCGACT CJJ81176_1421 1343626 - 1343513 - | putative glycosyltransferase CJJ81176_1422 1344313 - 1343639 - | capsular biosynthesis nucleotidyltransferase, putative TERM 1382 1343821 - 1343803 - G 71 -4.7 -4.78764 | opp_overlap 1343805 CAAATTCATTAAAAA TATCTTT AGTTA AAAGATA AATTCCACCATTGAT gmhA-2 1344906 - 1344301 - | phosphoheptose isomerase CJJ81176_1424 1345913 - 1344894 - | capsular biosynthesis sugar kinase, putative TERM 1383 1345926 - 1345963 + r 100 -13.2 -2.81225 | opp_overlap 1345939, overlap 1345924 1345928 CATTGAATTACTACT TATTTTGCTATAATTT ATTATA AAATTATAGCAAAATA TACTTAACTTCTATA TERM 1384 1345928 - 1345961 + r 85 -11.4 -2.94705 | opp_overlap 1345939, overlap 1345926 1345924 TTGAATTACTACTTA TTTTGCTATAATTT ATTATA AAATTATAGCAAAA TATACTTAACTTCTA CJJ81176_1425 1346926 - 1345988 - | HrEpiB TERM 1385 1346931 - 1346966 + r 100 -15.8 -3.42583 | opp_overlap 1346928 1346941, overlap 1346941 TTTTTTAACATATTT TTCCTTTAAATCGATG GTTT TATCGATTTAAAGGAA TTCTGCCTCTCTTAA wcbK 1347984 - 1346950 - | GDP-mannose 4,6-dehydratase TERM 1386 1347230 - 1347240 + g 72 -5.4 -4.81249 | opp_overlap 1347230 AAAGCTTCGCCACAA GGAA TAT TTCC TTTTTCACTTTCAAG fcl 1349051 - 1347993 - | GDP-fucose synthetase TERM 1387 1348732 - 1348746 + g 71 -2.1 -5.4387 | opp_overlap 1348745, overlap 1348744 1348745 TAAACCGTAGTTGAA GCTAT GAAAA GTAGC TTTTTTACTTTATGT CJJ81176_1428 1349681 - 1349061 - | hypothetical protein CJJ81176_1429 1349985 - 1349668 - | hypothetical protein CJJ81176_1430 1350533 - 1349988 - | putative nucleotide-sugar epimerase-dehydratase CJJ81176_1431 1352233 - 1350533 - | putative sugar transferase CJJ81176_1432 1353939 - 1352230 - | galactosyltransferase TERM 1388 1352573 - 1352593 + g 70 -5.5 -4.3351 | ATTCTTGTTTTAGCT TTTCCATAA TTA TTTTGGAAA TTTATTAGGTTTTGT TERM 1389 1352723 - 1352740 + g 81 -3.5 -5.59534 | TGATTTAAATATATT TGATCTT TGGT AAGATTA TTTTTTATTATGGTT CJJ81176_1433 1355426 - 1353945 - | putative sugar transferase TERM 1390 1355308 - 1355328 + g 100 -9.9 -4.94992 | opp_overlap 1355316, overlap 1355321 TCTGTGCTACCATCA TTTACAAGT ACA ACTTGTAAA TTTTTATAAGTTTGA CJJ81176_1434 1356637 - 1355432 - | putative sugar transferase TERM 1391 1356367 - 1356349 - G 70 -8.9 -2.58236 | overlap 1356348 CAAATCTATAGTAAG TGGCATG ATTAA CATGCCA AGCTTTTGGAAATCT CJJ81176_1435 1358459 - 1356648 - | putative sugar transferase TERM 1392 1356895 - 1356906 + g 86 -3 -5.96521 | CCATTACAAAGAATT TCAT ATAA ATGA TTTTTTTTGATTGAT TERM 1393 1358459 - 1358473 + r 73 -2.1 -5.8096 | AGTTTGGGTTATACA TAGGG TTTCT CCTTA TTTTTATTTTTTCTA CJJ81176_1436 1360632 - 1358452 - | putative glycosyl transferase TERM 1394 1359813 - 1359835 + g 72 -6.4 -4.32402 | overlap 1359816 AAAATATTTTATGAT TTTTATGTCT ATA AGACATATAA TTATTTTGATTAGGC TERM 1395 1359816 - 1359832 + g 70 -8.1 -3.14372 | overlap 1359813 ATATTTTATGATTTT TATGTCT ATA AGACATA TAATTATTTTGATTA TERM 1396 1360042 - 1360028 - G 76 -3.6 -5.41746 | AATCTTGCAAAAAAA TCATGA TCC TCATAA CTATGACCTATAAAA kpsF 1361576 - 1360629 - | arabinose-5-phosphate isomerase kpsD 1363244 - 1361586 - | capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein TERM 1397 1361876 - 1361848 - G 78 -6.7 -4.62984 | TTATCATACACAAAA GCTCCAGGTAAAG AAA CCTCACCTTGAAC TATGATGAGATTATT kpsE 1364364 - 1363246 - | capsular polysaccharide ABC transporter TERM 1398 1363448 - 1363458 + g 70 -5.4 -4.56775 | opp_overlap 1363436 TAAGCTTTTAAAGCT GCTT CAT AAGC TTTTTGCGCAAAAGT kpsT 1365026 - 1364364 - | capsular polysaccharide ABC transporter, ATP-binding protein kpsM 1365805 - 1365023 - | capsular polysaccharide ABC transporter, permease protein TERM 1399 1365169 - 1365159 - G 72 -2.6 -5.43866 | overlap 1365144 TAATTCTCAAAAAAA TTAA ATC TTAA AAGTTCAAAAATATG TERM 1400 1365607 - 1365597 - G 86 -3.2 -5.88197 | CTAAACATAAAAAAA GGCA TAA TACC TGAAATTAAAAACAT CJJ81176_1442 1366284 - 1365877 - | hypothetical protein TERM 1401 1366827 - 1366815 - g 71 -3.4 -5.27399 | opp_overlap 1366815 GAAGATAGCAAAAAA CTTC TTGAT GAAG TTTTAGAACAAATGA CJJ81176_1443 1366359 - 1366922 + | hypothetical protein CJJ81176_1444 1366958 - 1367647 + | deoxyuridine triphosphatase domain-containing protein TERM 1402 1367994 - 1367976 - g 74 -5.4 -4.95957 | GAAATCAACCAAAAA TATTACCA TTA TGATAATA CAAACGAAGTTTCAA CJJ81176_1445 1367649 - 1368362 + | hypothetical protein tilS 1369310 - 1368345 - | tRNA(Ile)-lysidine synthetase TERM 1403 1368842 - 1368829 - G 74 -5.3 -5.00616 | opp_overlap 1368829, overlap 1368811 TTTTCTTTTAAAAAA GATGA AATT TCATC TTTACTTATAAAGAG TERM 1404 1369058 - 1369076 + g 77 -9 -3.55815 | AATCTCTGGCTTTTT TTTCAAAG TTA CTTTGAAA TTTAGGAGCGTGTTT TERM 1405 1369089 - 1369099 + g 76 -2.6 -5.63504 | AAATTTAGGAGCGTG TTTT ATG AAAA TTTTTTTATGAAATT TERM 1406 1369291 - 1369265 - G 77 -9.6 -2.9045 | opp_overlap 1369257 1369265, overlap 1369264 AAAAAGCGAGTAAAT TTTTACCCCTTT TTA AAAGGGCTAAAA TTTCATCTTTAATTT TERM 1407 1369265 - 1369291 + g 91 -9.6 -4.05229 | opp_overlap 1369265 1369264, overlap 1369257 AAAAAGCGAGTAAAT TTTTACCCCTTT TTA AAAGGGCTAAAA TTTCATCTTTAATTT yliG 1370619 - 1369300 - | putative tRNA modifying protein TERM 1408 1369751 - 1369775 + g 88 -8.6 -4.47271 | CCTACGATAAAGCCC GTGCGCAAAA AGCTA TTTGGCGCAC TTTTCATTAAATTTA TERM 1409 1370263 - 1370282 + g 74 -2.2 -5.50499 | ACTCTGCAAATAAGT CGAATTTG AAAA TAAATTTG TTTTTTTAAGTATCA prfB 1370693 - 1371790 + | peptide chain release factor 2 TERM 1410 1371844 - 1371864 + T 74 -5.3 -4.90381 | opp_overlap 1371843 1371845 1371847, overlap 1371847 TAAAAAATTAGAAAG ATAGCGGGA TTT TCCCGCTTG TTTTATTATCTTGCA TERM 1411 1371863 - 1371845 - T 81 -8.8 -3.73262 | opp_overlap 1371844 1371847, overlap 1371843 1371847 AAAAAATTAGAAAGA TAGCGGGA TTT TCCCGCTT GTTTTATTATCTTGC TERM 1412 1371847 - 1371861 + T 95 -11.4 -4.53142 | opp_overlap 1371847 1371845 1371843, overlap 1371844 AAAATTAGAAAGATA GCGGGA TTT TCCCGC TTGTTTTATTATCTT TERM 1413 1371861 - 1371847 - T 87 -11.4 -3.40925 | opp_overlap 1371844 1371847, overlap 1371845 1371843 AAAATTAGAAAGATA GCGGGA TTT TCCCGC TTGTTTTATTATCTT CJJ81176_1449 1372126 - 1371947 - | hypothetical protein truD 1373501 - 1372383 - | tRNA pseudouridine synthase D TERM 1414 1372940 - 1372954 + gr 70 -7.2 -3.56366 | TTACATTTTTCATTT TTTTGC CAT GCAAAA TTTCAAGCCCTTCTT CJJ81176_1451 1374291 - 1373470 - | thiamine monophosphate kinase CJJ81176_1452 1374378 - 1375451 + | hypothetical protein CJJ81176_1453 1375448 - 1375831 + | hypothetical protein TERM 1415 1375890 - 1375876 - g 73 -3.6 -5.33848 | ATCACAATGAAAAAA GAAAAA AAT TTCTTC AAAAACAAGAAATTA CJJ81176_1454 1375821 - 1376507 + | site-specific DNA methyltransferase, putative flgI 1376566 - 1377612 + | flagellar basal body P-ring protein TERM 1416 1377767 - 1377779 + G 95 -6.3 -5.75342 | opp_overlap 1377765 1377767 AAAAGAACAAACAGA TGCTT TTG AAGCA TTTTTTTTAAAGCAA CJJ81176_1456 1377612 - 1377953 + | hypothetical protein CJJ81176_1457 1378016 - 1378213 + | hypothetical protein CJJ81176_1458 1378256 - 1378690 + | hypothetical protein flgK 1378700 - 1380526 + | flagellar hook-associated protein FlgK TERM 1417 1380509 - 1380533 + F 88 -12.3 -2.63596 | opp_overlap 1380496, overlap 1380514 ATGCTTGATACCTTA CTAGGGCTTAA ATC TTAAGCTCTAG TAATATCAAATGAAA TERM 1418 1380957 - 1380979 + G 88 -5.7 -5.63517 | opp_overlap 1380950 1380957 ATCAAAACCTTAAAT TCATATTCA AGTTA TGGATATGA TTTTTTCTTTGGAAA CJJ81176_1460 1380543 - 1381076 + | hypothetical protein CJJ81176_1461 1381066 - 1381299 + | hypothetical protein TERM 1419 1381488 - 1381474 - g 70 -8.6 -2.63784 | opp_overlap 1381474, overlap 1381473 AGCAACAAACAAACT CCAAAG CGT CTTTGG TTCTTTTACGGCTAC TERM 1420 1381474 - 1381488 + G 83 -8.6 -4.18506 | opp_overlap 1381474 1381473 AGCAACAAACAAACT CCAAAG CGT CTTTGG TTCTTTTACGGCTAC TERM 1421 1381569 - 1381595 + G 80 -6.7 -4.83615 | gap 1, overlap 1381574 TTTTTACAGCCTTAG GAGCAGCTATAG GAAG CTATAGC-GTTC TTTTTGTAAAAGATG TERM 1422 1381574 - 1381591 + G 72 -8.5 -3.31001 | overlap 1381569 ACAGCCTTAGGAGCA GCTATAG GAAG CTATAGC GTTCTTTTTGTAAAA CJJ81176_1462 1381310 - 1382074 + | hypothetical protein ctsF 1383249 - 1382071 - | general secretory pathway protein F ctsE 1384805 - 1383246 - | general secretory pathway protein E TERM 1423 1384356 - 1384345 - G 74 -3 -5.4833 | TCATGTAATAAAAAA TCAA AAAT TTGA CTGATGCAACTTTGA TERM 1424 1384480 - 1384498 + g 70 -3.8 -5.02074 | GCTATCTTTAATTCA TCGGCAAT TGC AGTGTCGA TTTTTTCACAAATCA ctsX 1385382 - 1384795 - | transformation system protein TERM 1425 1384904 - 1384914 + g 74 -5.4 -4.93365 | TGAGCAAAAATCAGC CAAG AAT CTTG TTTTTGCTTGTCAAG ctsP 1385994 - 1385386 - | transformation system protein ctsD 1387399 - 1385987 - | general secretory pathway protein D TERM 1426 1387017 - 1387030 + g 81 -8.1 -4.05902 | overlap 1387021 CTTTGCCTTGGTTTA GCGTC TACA GACGC TTTAGTTATACTTTG ctsR 1387688 - 1387377 - | transformation system protein CJJ81176_1469 1391272 - 1387712 - | pyruvate ferredoxin/flavodoxin oxidoreductase TERM 1427 1389352 - 1389388 + g 77 -4.6 -5.28942 | gap 1, opp_overlap 1389360 1389363, overlap 1389360 1389361 GTTTTACGATTTTTT CAACAAATTCAGTGCCT TTAT AGGCATTG-GTTTGTTC TTTTTCTTTAAGCTC TERM 1428 1389360 - 1389381 + g 82 -7.3 -4.8245 | opp_overlap 1389360 1389363, overlap 1389352 1389361 ATTTTTTCAACAAAT TCAGTGCCT TTAT AGGCATTGG TTTGTTCTTTTTCTT TERM 1429 1389361 - 1389380 + g 76 -8.6 -3.4581 | opp_overlap 1389360 1389363, overlap 1389360 1389352 TTTTTTCAACAAATT CAGTGCCT TTAT AGGCATTG GTTTGTTCTTTTTCT TERM 1430 1391230 - 1391214 - G 100 -10.9 -4.28361 | overlap 1391219 GCAACTTCAGTAAAA GCATACG CAG CGTATGC AGCAGCCTCATTTCC CJJ81176_1470 1392006 - 1391365 - | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein TERM 1431 1391517 - 1391533 + g 72 -5.1 -4.77719 | overlap 1391518 TATCTAATATTGTAT CGCCTAT CAT ATAGGCA TTTTCTTGAGTTTTA TERM 1432 1391518 - 1391532 + g 76 -8.6 -3.45005 | overlap 1391517 ATCTAATATTGTATC GCCTAT CAT ATAGGC ATTTTCTTGAGTTTT TERM 1433 1391936 - 1391911 - G 93 -11.3 -3.23452 | gap 1, opp_overlap 1391907 1391918 ATTTTTAGAAGTTAA TCCAAGG-GCTT TAA AAGCTCCTTGGA AAGAATTTAAAATAG cadF 1392965 - 1392006 - | fibronectin-binding protein TERM 1434 1393082 - 1393066 - R 100 -12.3 -3.99917 | AAAAAATTGTAGAAA GGTGGGA AAA TCCCACC AAAAAATATTAACGT rpsI 1393480 - 1393091 - | 30S ribosomal protein S9 rplM 1393926 - 1393483 - | 50S ribosomal protein L13 TERM 1435 1393994 - 1393954 - R 75 -4.3 -5.26316 | opp_overlap 1393958 1393959, overlap 1393959 1393963 TGATTGTATAAAAAA TAATATTAATTTTTACTTA ATT TAAGTAAAAATAAAGTTTA TATTTCCAAAATTTG TERM 1436 1393959 - 1393989 + r 73 -8.6 -3.19232 | opp_overlap 1393959 1393954 1393963, overlap 1393958 GTATAAAAAATAATA TTAATTTTTACTTA ATT TAAGTAAAAATAAA GTTTATATTTCCAAA TERM 1437 1393989 - 1393959 - R 82 -8.6 -3.96386 | opp_overlap 1393958 1393959, overlap 1393954 1393963 GTATAAAAAATAATA TTAATTTTTACTTA ATT TAAGTAAAAATAAA GTTTATATTTCCAAA TERM 1438 1393985 - 1393963 - R 82 -9.4 -3.57601 | opp_overlap 1393959 1393958, overlap 1393959 1393954 AAAAAATAATATTAA TTTTTACTTA ATT TAAGTAAAAA TAAAGTTTATATTTC CJJ81176_1474 1396757 - 1393992 - | ATP-dependent DNA helicase UvrD TERM 1439 1395389 - 1395399 + g 74 -5.4 -5.011 | TGATTTCTTGGGCTT GGTT TTT AACC TTTTGTTCTTTAGAT CJJ81176_1475 1399120 - 1396754 - | hypothetical protein TERM 1440 1398411 - 1398422 + g 83 -3 -5.79595 | overlap 1398420 TCAAAAGATTTGAGT TTCA TTTT TGAA TTTTTTGTTTTAAAA CJJ81176_1476 1399638 - 1399117 - | putative lipoprotein CJJ81176_1477 1400227 - 1399625 - | hypothetical protein TERM 1441 1399880 - 1399868 - G 71 -7.7 -3.40622 | overlap 1399866 TATCGGCAAAATAGA TCCTG TTC CAGGA TAAGGACTAAGCACA CJJ81176_1478 1400540 - 1400322 - | hypothetical protein ccoP 1401403 - 1400540 - | cytochrome c oxidase, cbb3-type, subunit III TERM 1442 1401053 - 1401071 + g 74 -5.4 -4.93595 | TTGACCCATTGCTAT TTTATCTT CAG GAGATAAA TTTTTAAATTTTTCT ccoQ 1401669 - 1401403 - | cytochrome c oxidase, cbb3-type, subunit IV TERM 1443 1401640 - 1401619 - G 83 -8.9 -4.05788 | overlap 1401629 TGTTGCTAAATCAAA TGTGATTAA ATTT TTAATCACA TCAAAAACTATTGAT ccoO 1402336 - 1401671 - | cytochrome c oxidase, cbb3-type, subunit II ccoN 1403815 - 1402349 - | cytochrome c oxidase, cbb3-type, subunit I TERM 1444 1403636 - 1403620 - G 70 -3.7 -5.1417 | GCATAAAACCAAAAA TCACACC TGA AGTATGA AGTGGTCTAAGTCTT TERM 1445 1403728 - 1403709 - G 75 -7.2 -4.14243 | TATGCCATTTGAAAA GCTATAAG AGTT CCTATAGC CATACCAACAATGCC CJJ81176_1483 1404621 - 1403941 - | DNA-binding response regulator TERM 1446 1404469 - 1404483 + g 72 -4.4 -5.03145 | GATAACTAAATCCGG TTTAAA TTT TTTAAA TTTTTTAAGCCCTTC CJJ81176_1484 1405835 - 1404624 - | sensory box sensor histidine kinase, putative TERM 1447 1405771 - 1405802 + g 100 -13.3 -3.54741 | opp_overlap 1405768 1405771 TTTCCTTGAACATCA GCTCTTGAAAAAA TTGTAT TTTTTTCAAGAGC TTTAAAAAACTGATC TERM 1448 1405802 - 1405771 - G 100 -13.3 -2.73875 | opp_overlap 1405771, overlap 1405768 TTTCCTTGAACATCA GCTCTTGAAAAAA TTGTAT TTTTTTCAAGAGC TTTAAAAAACTGATC CJJ81176_1485 1406491 - 1405832 - | hypothetical protein carA 1407606 - 1406488 - | carbamoyl phosphate synthase small subunit TERM 1449 1406685 - 1406699 + g 77 -5.7 -4.9725 | AATTATGATTTTGTG CGGTA ATTTC TACCG TTTTTGTATCAAGAT CJJ81176_1487 1408157 - 1407606 - | hypothetical protein TERM 1450 1407676 - 1407686 + g 71 -3.2 -5.22137 | TCATATTCTTCGCTA CCTG GAA TAGG TTTTGTTTTATAATT CJJ81176_1488 1408768 - 1408250 - | hypothetical protein CJJ81176_1489 1409042 - 1408761 - | hypothetical protein TERM 1451 1409075 - 1409053 - R 77 -8.5 -3.6106 | opp_overlap 1409053 GGCAATACGCCTAAA CTTTCACAC TCTTG GCGTGAAAG TTCATAAGCTTTTTC purA 1410436 - 1409186 - | adenylosuccinate synthetase TERM 1452 1409473 - 1409455 - G 74 -8.2 -3.5485 | overlap 1409451 CATCTAAAACATCAA GCTTCATC AAA GATAAAGC ATCAAGACCATTAAG TERM 1453 1411585 - 1411609 + G 72 -2.7 -5.43974 | overlap 1411587 CAAACTCATAGAACT TTCTCCTGCTG TAG CTGTGGGAGCA TTTTTGTTTGGTTTT CJJ81176_1492 1410701 - 1411909 + | putative inner membrane protein CJJ81176_1493 1411913 - 1412140 + | hypothetical protein TERM 1454 1412129 - 1412152 + T 100 -12.6 -3.31515 | opp_overlap 1412129 1412134 1412146, overlap 1412118 1412134 CTAAGATTTTTAATA CAAAAGCCTT AAAA AAGGCTTTTG TTCTCAAAGCTCTTT TERM 1455 1412152 - 1412129 - T 100 -12.6 -3.06315 | opp_overlap 1412129 1412118 1412134, overlap 1412134 1412146 CTAAGATTTTTAATA CAAAAGCCTT AAAA AAGGCTTTTG TTCTCAAAGCTCTTT TERM 1456 1412134 - 1412147 + T 82 -6.7 -4.77165 | opp_overlap 1412129 1412134 1412146, overlap 1412129 1412118 ATTTTTAATACAAAA GCCTT AAAA AAGGC TTTTGTTCTCAAAGC TERM 1457 1412147 - 1412134 - T 78 -6.7 -4.66938 | opp_overlap 1412134 1412129 1412118, overlap 1412129 1412146 ATTTTTAATACAAAA GCCTT AAAA AAGGC TTTTGTTCTCAAAGC putP 1413625 - 1412156 - | sodium/proline permease TERM 1458 1412433 - 1412447 + g 70 -4.3 -4.87665 | opp_overlap 1412433 1412431 GCATAAGAAACTATA CTCAA AACAC TTGAG TTTTTATCAGTAGAA TERM 1459 1412936 - 1412952 + g 70 -5.9 -4.26463 | opp_overlap 1412936 TCCTTCGCCCATAGA TAAAGCT TGT GGCTTTA TTTCTCTTACTATAT CJJ81176_1495 1417131 - 1413643 - | bifunctional putA protein, putative selD 1418188 - 1417262 - | selenide, water dikinase CJJ81176_1497 1418866 - 1418294 - | hypothetical protein TERM 1460 1418646 - 1418657 + g 83 -3 -5.75599 | ATATTTACTTCACTA GAAT CAAA ATTC TTTTTTTGTACTTTG TERM 1461 1418979 - 1418952 - R 85 -4.2 -5.86465 | opp_overlap 1418959, overlap 1418954 1418959 AATAATATAAAAAAA TTTAAAAGCTCA AAAA TGAGCTTTTTTA AAATCTTTTTTTACT TERM 1462 1418959 - 1418972 + r 90 -6.7 -5.10077 | opp_overlap 1418954 1418952 1418959 TAAAAAAATTTAAAA GCTCA AAAA TGAGC TTTTTTAAAATCTTT TERM 1463 1418972 - 1418959 - R 78 -6.7 -4.57275 | opp_overlap 1418959, overlap 1418954 1418952 TAAAAAAATTTAAAA GCTCA AAAA TGAGC TTTTTTAAAATCTTT CJJ81176_1498 1421079 - 1418977 - | methyl-accepting chemotaxis protein TERM 1464 1419286 - 1419304 + g 76 -8.9 -3.53012 | ATGTTCTCCAGCACG TGCAGCT TCAAT AGCTGCA TTTAAAGCAAGAAGA TERM 1465 1420001 - 1419979 - G 70 -4.2 -4.95854 | TAAAAAACGGAAAAA TGATTCTAAA GAA CTAAGAATCA CAGGCAATCTAGATG TERM 1466 1421060 - 1421046 - G 76 -3.6 -5.36441 | overlap 1421051 CTGCCACAGAAAAAA TAAGTT TTA AACCTA TATTTAAAGATTTAA CJJ81176_1499 1421893 - 1421192 - | molybdate transport repressor fdhD 1422704 - 1421922 - | formate dehydrogenase accessory protein TERM 1467 1422866 - 1422839 - R 74 -7 -4.33739 | opp_overlap 1422864, overlap 1422840 1422842 CAAAAAAGCTTAAAA CTACCGCTATGC AATA ACATAGCGGTTA AAGATTAAATTTTTA TERM 1468 1422865 - 1422840 - R 73 -8.3 -3.18617 | opp_overlap 1422864, overlap 1422839 1422842 AAAAAAGCTTAAAAC TACCGCTATGC AATA ACATAGCGGTT AAAGATTAAATTTTT TERM 1469 1422863 - 1422842 - R 85 -10.9 -3.12962 | overlap 1422840 1422839 AAAAGCTTAAAACTA CCGCTATGC AATA ACATAGCGG TTAAAGATTAAATTT fdhC 1423803 - 1422871 - | formate dehydrogenase, cytochrome b subunit fdhB 1424441 - 1423800 - | formate dehydrogenase, iron-sulfur subunit fdhA 1426678 - 1424438 - | formate dehydrogenase, alpha subunit, selenocysteine-containing TERM 1470 1426410 - 1426422 + g 76 -6.3 -4.67234 | GTATCTTCTAAGCCT TCATC AAA GATGA TTTTTAACATTCCAT CJJ81176_1504 1427242 - 1426700 - | formate dehydrogenase CJJ81176_1505 1427433 - 1427242 - | Tat pathway signal sequence domain-containing protein TERM 1471 1427343 - 1427360 + gr 75 -8.5 -3.40403 | CTTTTCTTTCTTCAT CTTTAGC TAGA GCTAAAG TTGTGCTACCAAGCA CJJ81176_1506 1428109 - 1427408 - | hypothetical protein nspC 1429573 - 1428425 - | carboxynorspermidine decarboxylase TERM 1472 1428683 - 1428695 + g 71 -4.9 -4.74285 | GCTTTCTTTTAAGTC TGAAA TTT TTTCA TTTTCTCTTGTGGCT TERM 1473 1429891 - 1429877 - g 72 -6.4 -4.23999 | opp_overlap 1429877 TTAGATCCAAAACAA TTCCCC CAA GGAGAA ATTTTAAAAGCCTTA CJJ81176_1508 1429697 - 1431238 + | oxidoreductase, putative CJJ81176_1509 1431240 - 1431461 + | thiS family protein CJJ81176_1510 1431462 - 1431908 + | molybdopterin converting factor, subunit 2 CJJ81176_1511 1431912 - 1433102 + | molybdopterin biosynthesis MoeA protein, putative CJJ81176_1512 1434463 - 1433615 - | hypothetical protein CJJ81176_1513 1435790 - 1434456 - | hypothetical protein TERM 1474 1434758 - 1434746 - G 72 -6.3 -4.21194 | TCTCATCATCTAAAA CTTTC ATC GAAAG CAAGGTATCATCATA TERM 1475 1436241 - 1436210 - R 85 -10.4 -3.14401 | opp_overlap 1436211 1436216 1436220, overlap 1436216 AAAAAATAAGAACTA CAAAAATAAAGCGT ATTG ACGCTTTATTTTCA TTCTAAAACAATACC TERM 1476 1436211 - 1436240 + r 75 -9.5 -2.57564 | opp_overlap 1436210 1436216, overlap 1436216 1436220 AAAAATAAGAACTAC AAAAATAAAGCGT ATTG ACGCTTTATTTTC ATTCTAAAACAATAC TERM 1477 1436235 - 1436216 - R 100 -9.4 -5.03945 | opp_overlap 1436211 1436216 1436220, overlap 1436210 TAAGAACTACAAAAA TAAAGCGT ATTG ACGCTTTA TTTTCATTCTAAAAC TERM 1478 1436216 - 1436235 + r 89 -9.4 -4.48987 | opp_overlap 1436216 1436210, overlap 1436211 1436220 TAAGAACTACAAAAA TAAAGCGT ATTG ACGCTTTA TTTTCATTCTAAAAC TERM 1479 1436220 - 1436231 + r 77 -5.8 -4.80487 | opp_overlap 1436216 1436210, overlap 1436216 1436211 AACTACAAAAATAAA GCGT ATTG ACGC TTTATTTTCATTCTA purM 1437228 - 1436239 - | phosphoribosylaminoimidazole synthetase coaE 1437289 - 1437894 + | dephospho-CoA kinase TERM 1480 1438421 - 1438399 - gf 70 -5 -4.59853 | TTAATTTTGTAAAAA TTTTAGATGA AAA TCATTTAAAA GTTCGCACCTATGAA dapF 1437891 - 1438640 + | diaminopimelate epimerase CJJ81176_1517 1438615 - 1439346 + | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein CJJ81176_1518 1440380 - 1439343 - | hypothetical protein TERM 1481 1439675 - 1439696 + g 83 -2.4 -5.88471 | overlap 1439676 TTCTTAGGCCAAAAT CTTTAAAA TAAATC TTTTGAAG TTTTTTTTCATCATG TERM 1482 1440384 - 1440402 + r 77 -9 -3.3573 | AAGTACTTTCAATTT TATCCTTT AAA AAAGGATA TTATAACCTAGTTTG TERM 1483 1440425 - 1440439 + r 73 -8.5 -3.2352 | opp_overlap 1440424 CTAGTTTGTATAATT GGGGC ATAAA GCCCC TTAAATTACATTTTG CJJ81176_1519 1440894 - 1440445 - | bacterioferritin, putative TERM 1484 1440981 - 1440923 - R 75 -7.5 -4.14392 | gap 1, opp_overlap 1440923 1440936 1440944, overlap 1440936 TTTTAATTTTTAAAA TTATAACATAAAATTCTTAAATAATAAT TATT ATTATTAATTAAAAATTTT-TATTATAA TTTTAACTTAAAATC TERM 1485 1440969 - 1440936 - R 71 -4.9 -4.76193 | opp_overlap 1440936 1440923 1440944, overlap 1440923 AATTATAACATAAAA TTCTTAAATAATAAT TATT ATTATTAATTAAAAA TTTTTATTATAATTT pgi 1442244 - 1441024 - | glucose-6-phosphate isomerase galU 1443062 - 1442238 - | UTP-glucose-1-phosphate uridylyltransferase TERM 1486 1443120 - 1443143 + r 87 -10.4 -3.64487 | opp_overlap 1443120 1443123, overlap 1443123 TGAATTTTCATGCAA CAAGGCAAAG TTCT TTTTGCCTTG TTATTCAAACTCTGC TERM 1487 1443143 - 1443120 - R 77 -9.7 -3.06831 | opp_overlap 1443120 1443123, overlap 1443123 TGAATTTTCATGCAA CAAGGCAAA GTTCTT TTTGCCTTG TTATTCAAACTCTGC acs 1445117 - 1443144 - | acetyl-CoA synthetase CJJ81176_1523 1446250 - 1445255 - | tungsten ABC transporter, ATP-binding protein, putative TERM 1488 1445827 - 1445838 + g 75 -4.4 -5.24449 | opp_overlap 1445827 TTACGCTTAAAGCTA TAGC AAAA GCTA TTTTTTGACTTTGTC TERM 1489 1445852 - 1445873 + g 73 -8.1 -3.54146 | overlap 1445850 1445856 TATTTTTTGACTTTG TCCTGATGA AAGT TCATTAGGA TGTTTACTTAAAAGA CJJ81176_1524 1446938 - 1446252 - | tungstate ABC transporter, permease protein, putative TERM 1490 1446961 - 1446986 + H 100 -6.3 -5.72616 | opp_overlap 1446963, overlap 1446963 CTTTTTAAAATAAGT AATTTTAGCAT AATT ATGCTAAAATA TTTTTTTATATAAAT TERM 1491 1446963 - 1446984 + H 86 -8.9 -4.50122 | opp_overlap 1446963, overlap 1446961 TTTTAAAATAAGTAA TTTTAGCAT AATT ATGCTAAAA TATTTTTTTATATAA TERM 1492 1446984 - 1446963 - H 81 -8.9 -3.68798 | opp_overlap 1446963 1446961 TTTTAAAATAAGTAA TTTTAGCAT AATT ATGCTAAAA TATTTTTTTATATAA CJJ81176_1525 1447017 - 1447826 + | tungstate ABC transporter, periplasmic tungstate-binding protein, putative TERM 1493 1447853 - 1447830 - f 100 -12.6 -4.99972 | opp_overlap 1447828 1447826 AGAAAAGACTAAAAA TTAAGCAGGT TTTA ACCTGCTTAA AATATCATTTTTTAC TERM 1494 1448308 - 1448298 - g 74 -8.2 -3.63336 | opp_overlap 1448297 1448294 ATACAGCATTTTAAA GCCC ATG GGGC GCTTTATAATATGGC CJJ81176_1526 1447968 - 1448735 + | hypothetical protein TERM 1495 1449117 - 1449099 - g 70 -6 -4.25676 | AATCAAATTTCAAAA GAAGAGCT TAT ATCTCTTC ACACTAAACCTTATT TERM 1496 1449377 - 1449356 - g 76 -2.9 -5.6473 | opp_overlap 1449357 1449364, overlap 1449357 AGAAGATGAAAAAAA TCCCACTCT TTTA AAAGCGGGT ATGTTTTTAAAATTT CJJ81176_1527 1448745 - 1449485 + | hypothetical protein TERM 1497 1449614 - 1449593 - g 73 -8.1 -3.43751 | overlap 1449591 TAAGAATGGCAAATA TCTTGCTTG GAAA CAAACAAGA TGAAGCAGGAATTGA TERM 1498 1449846 - 1449836 - g 70 -4 -4.8622 | GCTTTGAAGTAAAAA GTTT TTT AAAC TCTAAATCCAGTGAT CJJ81176_1528 1449466 - 1450431 + | hypothetical protein CJJ81176_1529 1451324 - 1450428 - | integral membrane protein TERM 1499 1450765 - 1450787 + g 91 -9.9 -4.05446 | opp_overlap 1450763 1450760 ATATAAAAGTTAATC GCCAAAGGG TGAGC TCCTTTGGC TTTATGATTAAACAC TERM 1500 1451354 - 1451364 + r 71 -2.6 -5.45726 | opp_overlap 1451353 1451354, overlap 1451353 ATTTTTAAGTCAAAT TTTT TAA AAAA TTTTTTTCAAGTGTA CJJ81176_1530 1451935 - 1451357 - | flavodoxin-like fold domain-containing protein CJJ81176_1531 1452035 - 1452382 + | transcriptional regulator, putative CJJ81176_1532 1452370 - 1452819 + | putative homolog of BLC protein CJJ81176_1533 1453897 - 1452821 - | zinc-binding dehydrogenase family oxidoreductase TERM 1501 1452965 - 1452951 - G 75 -4.3 -5.27335 | opp_overlap 1452951 TGTTTTAAAGAAAAA TCAAG CATTT CTTGA GTTTCAGCAATACCA TERM 1502 1453215 - 1453228 + g 83 -2.3 -5.85244 | GAGCTTACACCCATA GCCAA AGCA TCGGC TTTTTTGTTTTCATT CJJ81176_1534 1457220 - 1454125 - | type I restriction-modification enzyme, R subunit TERM 1503 1454606 - 1454626 + g 73 -5.5 -4.67904 | TCATTTAGTATCTTT TTTAGCATT TCA AAGGCTAAA TTTTTACGCTTCATA TERM 1504 1454754 - 1454782 + g 76 -6.1 -4.53685 | opp_overlap 1454768, overlap 1454755 1454757 TAGCTTTATCTACTA CTTGCTTTATCAA AGC TTGATTAAGCAAA TTTTCATTCTCATTT TERM 1505 1454755 - 1454781 + g 80 -9.6 -3.30584 | opp_overlap 1454768, overlap 1454754 1454757 AGCTTTATCTACTAC TTGCTTTATCAA AGC TTGATTAAGCAA ATTTTCATTCTCATT TERM 1506 1455630 - 1455653 + g 71 -7.6 -3.4557 | gap 1, opp_overlap 1455638, overlap 1455633 1455638 GTCTGCTTGTGCTAC CTACTAAAGCT TCT AGCTT-AGTAG CTTTTGCTTTTTGGC TERM 1507 1455638 - 1455654 + g 72 -5.1 -4.78661 | opp_overlap 1455638, overlap 1455630 1455633 GTGCTACCTACTAAA GCTTCTA GCT TAGTAGC TTTTGCTTTTTGGCT CJJ81176_1535 1458989 - 1457223 - | RloH TERM 1508 1458861 - 1458847 - G 70 -3.6 -5.0917 | TGATTAAAAAATAAA TTTAAG GCT CTCAAA AAATTAGTCTTTCCA CJJ81176_1536 1460142 - 1459000 - | hypothetical protein TERM 1509 1459561 - 1459547 - G 75 -7.2 -4.11216 | TCTTTACTCTTAAAA GCAAAA CCA TTTTGC ATAGATATAAAATCA CJJ81176_1537 1460154 - 1460315 + | hypothetical protein CJJ81176_1538 1461812 - 1460361 - | MloB CJJ81176_1539 1463326 - 1461824 - | type I restriction-modification system, M subunit CJJ81176_1540 1463390 - 1463503 + | hypothetical protein TERM 1510 1463690 - 1463667 - T 100 -9.7 -5.26247 | opp_overlap 1463667 TTAAAAGAAATAAAA GATGCCTTA AAAGCA TAAGGCATC TTTATTTATAGGCTT TERM 1511 1463667 - 1463690 + T 95 -9.7 -4.56969 | opp_overlap 1463667 TTAAAAGAAATAAAA GATGCCTTA AAAGCA TAAGGCATC TTTATTTATAGGCTT CJJ81176_1541 1464331 - 1463696 - | hypothetical protein CJJ81176_1542 1464524 - 1464856 + | transcriptional regulator TERM 1512 1464857 - 1464894 + F 83 -8.9 -3.98842 | opp_overlap 1464861 1464865 1464877, overlap 1464858 1464861 1464865 AAAAATATCGTTTAA GTAATAAATTAATATAT CAAT ATATATTAATTTATTAA TTTATACATGTTATA TERM 1513 1464858 - 1464893 + F 91 -12.4 -2.98582 | opp_overlap 1464861 1464865 1464877, overlap 1464857 1464861 1464865 AAAATATCGTTTAAG TAATAAATTAATATAT CAAT ATATATTAATTTATTA ATTTATACATGTTAT TERM 1514 1464890 - 1464861 - f 80 -9.7 -3.34522 | opp_overlap 1464861 1464858 1464857 1464865, overlap 1464865 1464877 ATATCGTTTAAGTAA TAAATTAATATAT CAAT ATATATTAATTTA TTAATTTATACATGT TERM 1515 1464861 - 1464890 + F 82 -9.7 -3.6239 | opp_overlap 1464861 1464865 1464877, overlap 1464858 1464857 1464865 ATATCGTTTAAGTAA TAAATTAATATAT CAAT ATATATTAATTTA TTAATTTATACATGT TERM 1516 1464865 - 1464886 + F 71 -6.1 -4.42976 | opp_overlap 1464861 1464865 1464877, overlap 1464861 1464858 1464857 CGTTTAAGTAATAAA TTAATATAT CAAT ATATATTAA TTTATTAATTTATAC CJJ81176_1543 1464941 - 1465063 + | permease, putative CJJ81176_1544 1465247 - 1465888 + | hypothetical protein arsR 1465898 - 1466077 + | arsenical resistance operon repressor CJJ81176_1546 1466068 - 1466220 + | arsenical resistance operon repressor CJJ81176_1547 1466659 - 1466228 - | MerR family transcriptional regulator CJJ81176_1548 1466772 - 1467653 + | methyl-accepting chemotaxis protein TERM 1517 1468172 - 1468157 - g 72 -6.2 -4.28049 | GTTAAAATGCTAAAA CAAAGT TCAG ACTTTG CTAATGCTTTAGCTA CJJ81176_1549 1468028 - 1468738 + | methyl-accepting chemotaxis protein pflA 1471147 - 1468781 - | paralyzed flagella protein PflA TERM 1518 1470171 - 1470154 - G 76 -9.9 -2.64155 | overlap 1470151 TCTTTGCCAAACTCA TAGCTGC TCTT GCAGCTA AATCTAAATTTTTTG TERM 1519 1470797 - 1470775 - G 81 -7.2 -4.56597 | overlap 1470780 GTTCTGGTGTAAAAA TAAAAGTAAA AGC CTTACTTTTA TGCGAACTTGATGAA nuoN 1472557 - 1471169 - | NADH-quinone oxidoreductase, N subunit TERM 1520 1471209 - 1471194 - G 70 -4 -4.94147 | AACAATATAACAAAA GTGCTT ACAC AAACAC AAAAAGCTAAAATAA nuoM 1474034 - 1472547 - | NADH-quinone oxidoreductase, M subunit TERM 1521 1473011 - 1472996 - G 72 -4.8 -4.88293 | opp_overlap 1472994 1472996 AATGGTAAAAAGAAA TATCAT AAGT ATGATA TCTTTGGTATAAAAG TERM 1522 1473557 - 1473539 - G 71 -6.8 -3.90729 | AATAAGCTTGATAAA TCAATGCT ACA AGCATTAA AATTGAACCCGCAAA nuoL 1475826 - 1474036 - | NADH dehydrogenase subunit L nuoK 1476124 - 1475828 - | NADH-quinone oxidoreductase, K subunit nuoJ 1476639 - 1476121 - | NADH dehydrogenase subunit J nuoI 1477277 - 1476636 - | NADH dehydrogenase subunit I nuoH 1478285 - 1477287 - | NADH dehydrogenase subunit H nuoG 1480740 - 1478278 - | NADH dehydrogenase subunit G TERM 1523 1478444 - 1478467 + g 75 -4 -5.20783 | TCTTTTATTTTAAGT TTTACAAGAT CTTT ATCTTTTAAA TTTTTCTCTTTAGCT CJJ81176_1559 1481429 - 1480737 - | hypothetical protein TERM 1524 1481174 - 1481158 - G 80 -6.5 -5.00884 | opp_overlap 1481158 ACCTCTTTTAAAAAA GCAAGCA CTT CGCCTGC TTCTTCCTCTCCAAA CJJ81176_1560 1481566 - 1481426 - | hypothetical protein nuoD 1482876 - 1481650 - | NADH dehydrogenase subunit D TERM 1525 1482140 - 1482120 - G 71 -6.9 -3.97834 | opp_overlap 1482119 CAACTTCATTATAAA GCAAATAAG GCT CTTCTTTGC GTATATCGTATTTTA TERM 1526 1482609 - 1482623 + g 76 -10 -2.84173 | opp_overlap 1482608 1482606 1482605 AATAAGCATAATTAT TCGCTG AAG CAGCGA TATAGTCCATTCTAT nuoC 1483669 - 1482878 - | NADH dehydrogenase subunit C nuoB 1484172 - 1483669 - | NADH dehydrogenase subunit B nuoA 1484543 - 1484154 - | NADH dehydrogenase subunit A CJJ81176_1565 1485421 - 1484756 - | peptide ABC transporter, ATP-binding protein TERM 1527 1484884 - 1484859 - G 81 -4.9 -5.38047 | opp_overlap 1484866, overlap 1484860 TAGTCATATAAAAAA GTTAAAATTTC TTTA GAAATTTTAAT ATCAAACGCTGAAGT TERM 1528 1484883 - 1484860 - G 77 -8.4 -3.81744 | opp_overlap 1484866, overlap 1484859 AGTCATATAAAAAAG TTAAAATTTC TTTA GAAATTTTAA TATCAAACGCTGAAG TERM 1529 1485084 - 1485095 + g 71 -3 -5.31158 | opp_overlap 1485084 AAATTTTCCAAACCA TCTT GTAT AAGA TTTTTGATTTTTTTA CJJ81176_1566 1486124 - 1485414 - | peptide ABC transporter, ATP-binding protein CJJ81176_1567 1486909 - 1486121 - | peptide ABC transporter, permease protein CJJ81176_1568 1487846 - 1486902 - | peptide ABC transporter, permease protein TERM 1530 1486984 - 1486974 - G 79 -5.4 -5.30575 | TAAAAATGTAAAAAA TGCT GCA AGCA AAACACTAAAAAATA TERM 1531 1487050 - 1487036 - G 71 -5.8 -4.42235 | overlap 1487023 AATCTTTAAAAATAA TACTTT TAA AAAGTA AAGACCCAAGCCCCT TERM 1532 1487692 - 1487680 - G 74 -7.7 -3.72893 | opp_overlap 1487679 TACTGCTCTAGCAAA GGCTT ATC AAGCC CTAAATTTTGTTCTA CJJ81176_1569 1489381 - 1487846 - | peptide ABC transporter, periplasmic peptide-binding protein CJJ81176_1570 1489716 - 1492040 + | anaerobic dimethyl sulfoxide reductase chain A dmsB 1492051 - 1492707 + | dimethylsulfoxide reductase, chain B CJJ81176_1572 1492694 - 1493560 + | hypothetical protein TERM 1533 1493706 - 1493733 + G 100 -13 -3.1505 | opp_overlap 1493704 1493703, overlap 1493699 CACCGCTTTAAAGCT TTTATCATCTTC AAAC GAAGATGATAAA TTAATAGCAAGTGAT TERM 1534 1493983 - 1493997 + G 81 -2.9 -5.74086 | opp_overlap 1493983, overlap 1493987 ATAACTTTGCAAAAA TTCTT AAAAG AAGAA TTTTTTATTTGGTTT TERM 1535 1494082 - 1494064 - g 93 -10.4 -3.89055 | opp_overlap 1494065 ACACATTTTTATAAA GCATTAAC AAT GTTAATGC AAGATTTTTTCAATC CJJ81176_1573 1493560 - 1494117 + | hypothetical protein CJJ81176_1574 1494184 - 1494606 + | flavohemoprotein, truncation TERM 1536 1494628 - 1494607 - T 73 -6.7 -4.11183 | gap 1, opp_overlap 1494612, overlap 1494612 CTCTATGATAAATAA TACAAGCCCA TTT TGGGCTT-TA ATCAAATTTTTCTAC TERM 1537 1494612 - 1494624 + T 81 -9.1 -3.79623 | opp_overlap 1494607 1494612 TGATAAATAATACAA GCCCA TTT TGGGC TTTAATCAAATTTTT TERM 1538 1494624 - 1494612 - T 83 -9.1 -3.93744 | opp_overlap 1494612, overlap 1494607 TGATAAATAATACAA GCCCA TTT TGGGC TTTAATCAAATTTTT CJJ81176_1575 1496257 - 1494626 - | multidrug transporter membrane component/ATP-binding component TERM 1539 1494778 - 1494796 + g 77 -4.6 -5.24129 | TTGTTTTACCTTGCT CTTTTAAC AAA GGTAAAAG TTTTTTATAAAAAAA TERM 1540 1495188 - 1495176 - G 75 -4.8 -5.07941 | opp_overlap 1495176 AAAAGCATACAAAAA GTGG ATTTA CCAC TTCCATTTTTACCTA TERM 1541 1495284 - 1495296 + g 85 -4.9 -5.53288 | opp_overlap 1495293 TAAGCAAATTGAGTA TTTCT AAA AGAAA TTTTTTTCCATTCAC TERM 1542 1495782 - 1495770 - G 73 -3.5 -5.1861 | TTCATCATCAAAAAA TTATT AGT AATAA AAATAACCATAATCC CJJ81176_1576 1497602 - 1496307 - | proline/betaine transporter, putative, authentic frameshift TERM 1543 1497144 - 1497161 + g 70 -3.5 -5.07486 | TGAATTTAAACAGCT TAAAAAG AAAG CTTTTTG TTTTTCTTGACAATG CJJ81176_1577 1497690 - 1498487 + | hypothetical protein infA 1498575 - 1498793 + | translation initiation factor IF-1 rpmJ 1498965 - 1499078 + | 50S ribosomal protein L36 rpsM 1499081 - 1499446 + | 30S ribosomal protein S13 rpsK 1499456 - 1499848 + | 30S ribosomal protein S11 rpsD 1499876 - 1500502 + | 30S ribosomal protein S4 rpoA 1500515 - 1501528 + | DNA-directed RNA polymerase subunit alpha rplQ 1501532 - 1501885 + | 50S ribosomal protein L17 TERM 1544 1501908 - 1501891 - f 88 -9.9 -3.91911 | opp_overlap 1501891 TGTAGCTTAATCAAA TCCTAGC TTTT GCTAGGA TTAATACTTCAATTA TERM 1545 1501891 - 1501908 + F 81 -9.9 -3.28984 | opp_overlap 1501891 TGTAGCTTAATCAAA TCCTAGC TTTT GCTAGGA TTAATACTTCAATTA TERM 1546 1502417 - 1502403 - g 93 -5.8 -6.09888 | opp_overlap 1502402, overlap 1502404 CCTCAAGAAAAAAAA TTTCAA AAT TTGAAA GATTTTGAAGGCTTA TERM 1547 1502785 - 1502768 - g 79 -5.6 -5.07652 | overlap 1502779 TGCTCCAAAAGAAAA GCTTGA TAAAAT TCAAGC CCTACTTCCAGGAGT TERM 1548 1502854 - 1502843 - g 78 -3 -5.56568 | opp_overlap 1502843 ACACGATGAAAAAAA TGTA GCTT TACA TATGGTAAGTAAAGA hisG 1502058 - 1502957 + | ATP phosphoribosyltransferase TERM 1549 1503024 - 1503013 - g 71 -5.8 -4.42156 | overlap 1503022 AAACAAAAAGAAGAA GCGT TAAA ACGC CCTGCTATAAGTGCG TERM 1550 1503397 - 1503413 + G 87 -10.9 -3.2963 | TTAATGTTAGCTATC CCTGCAA AAA TTGCAGG TTGTGAAAAAATCGT hisD 1502965 - 1504251 + | histidinol dehydrogenase TERM 1551 1504422 - 1504435 + G 72 -6.7 -4.07568 | opp_overlap 1504413 1504412 AGCAATCAAGATGGT CTTGG AACG CCAAG TTTTCCAAAGGAAAA TERM 1552 1504436 - 1504450 + G 77 -7.2 -4.20696 | TCTTGGAACGCCAAG TTTTCC AAA GGAAAA TTTTGAAATTGCTCA hisB 1504248 - 1505306 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 1505303 - 1505890 + | imidazole glycerol phosphate synthase subunit HisH TERM 1553 1505979 - 1505968 - g 88 -3 -6.13503 | TACGAACAAAAAAAA GTAT ATAA ATAC AATCCCTTGGAAAAA hisA 1505887 - 1506618 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 1554 1506783 - 1506799 + G 70 -5.2 -4.55295 | opp_overlap 1506783 TATGTTGATATAAAA GAATTG CAACA CAATTC TTTATTTATCAAAGC TERM 1555 1506799 - 1506783 - g 73 -5.9 -4.53303 | opp_overlap 1506783 TATGTTGATATAAAA GAATTGC AAC ACAATTC TTTATTTATCAAAGC CJJ81176_1589 1506603 - 1507505 + | HrgA protein TERM 1556 1507593 - 1507580 - g 72 -5.3 -4.8066 | overlap 1507587 AACACAATTTAAAAA CCATA AAGA TATGG GAGATATCATAGAGC hisF-2 1507506 - 1508273 + | imidazole glycerol phosphate synthase subunit HisF TERM 1557 1508316 - 1508306 - g 79 -5.4 -5.29385 | opp_overlap 1508312 AACTTAATGAAAAAA TTGC TTG GCAA AAAGTGGATCATCTT hisI 1508275 - 1508898 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 1558 1508908 - 1508886 - T 70 -7.8 -3.27619 | overlap 1508885 1508887 1508889 AAAGTTGAAAGAAAG GCATAAAGCT TAA AGCTTTATGT AAATGAATTTATATC TERM 1559 1508907 - 1508887 - T 83 -11.3 -2.55487 | overlap 1508886 1508885 1508889 AAGTTGAAAGAAAGG CATAAAGCT TAA AGCTTTATG TAAATGAATTTATAT CJJ81176_1592 1510082 - 1508922 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative mrp 1511214 - 1510108 - | ATP/GTP-binding protein TERM 1560 1511547 - 1511534 - g 72 -5.3 -4.79667 | AAAATTTACTAAAAA CTATG AATT CATAG AAGGTGGTGATACCA ispDF 1511337 - 1512452 + | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein CJJ81176_1595 1512449 - 1513336 + | DNA-binding response regulator, putative CJJ81176_1596 1513314 - 1514474 + | ATP-sulfurylase family protein pgpA 1514479 - 1514979 + | phosphatidylglycerophosphatase A rpsT 1515058 - 1515321 + | 30S ribosomal protein S20 TERM 1561 1515694 - 1515704 + G 70 -5.4 -4.55295 | GCAGGTACAGGTGGT GATG AGG CATC TTTATTTGTAGGAGA prfA 1515340 - 1516407 + | peptide chain release factor 1 CJJ81176_1600 1517176 - 1516421 - | hypothetical protein TERM 1562 1516938 - 1516959 + g 73 -9.5 -2.59185 | overlap 1516937 1516935 CTAAAATTTTGCTCA CTCTTTGCA CTCA TGCAAAGGG ATATTATAGTATCTT chuA 1517370 - 1519478 + | TonB-dependent heme receptor CJJ81176_1602 1519453 - 1520439 + | hemin ABC transporter, permease protein, putative CJJ81176_1603 1520439 - 1521215 + | hemin ABC transporter, ATP-binding protein, putative CJJ81176_1604 1521212 - 1522018 + | hemin ABC transporter, periplasmic hemin-binding protein, putative CJJ81176_1605 1522932 - 1522015 - | hypothetical protein TERM 1563 1522940 - 1522951 + H 78 -3 -5.7827 | TGTAACATTTTTATC GATA TTTT TATC TTTTTTATTTCTCTT TERM 1564 1523541 - 1523553 + G 90 -4.9 -5.75538 | TTTGGCCGTTGCAAG CATTA GTA TAATG TTTTTATTTTTTAGC TERM 1565 1523960 - 1523974 + G 75 -4.3 -5.1925 | GTATTTTGGCATTGG TAGGA ATTTA TCCTA TTTTTTCACTTATAG kgtP 1523038 - 1524297 + | alpha-ketoglutarate permease mutY 1525302 - 1524283 - | A/G-specific adenine glycosylase TERM 1566 1524339 - 1524314 - G 72 -7.6 -3.55622 | opp_overlap 1524318, overlap 1524318 TTTAACGCTTTTAAA GAAAGTGCCG AAAGTG CGGTACTTTC TAACTCTTTTAAGGT TERM 1567 1524534 - 1524549 + g 95 -7.6 -5.5074 | AAAGCTTATCTTGGC TTTGCC CTAT GGCAAA TTTTTTATTAAATTC TERM 1568 1525338 - 1525317 - H 70 -7.5 -3.50929 | opp_overlap 1525334, overlap 1525314 TAAATGAGAGTATAA CAAAAAATT TTAA AATTTTTTG CTAAAATTAGCTCAA CJJ81176_1608 1525375 - 1526127 + | hypothetical protein TERM 1569 1526134 - 1526164 + F 81 -10 -3.18381 | opp_overlap 1526133 1526140, overlap 1526130 1526129 TGCAAATAACTTAAG GCAAAATAAACT CCTTTTA AGTTTATTTTGC TATACTTTTATCTTC TERM 1570 1526240 - 1526224 - f 75 -9.5 -2.62983 | overlap 1526227 CTCAGGGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCGA TERM 1571 1526328 - 1526308 - f 71 -8.3 -2.89742 | overlap 1526311 TGGAATTGGTAGACA CAAGGGACT TAA AATCCCTCG GAATTTTTCTTCCGT TERM 1572 1527306 - 1527333 + G 88 -9.4 -4.06678 | gap 1, opp_overlap 1527306 TTAAAATGGCAAAAA GGGC-AATTTAAA CTT TTTAAATTAGCCC TTTCTATGAATGGCT TERM 1573 1527333 - 1527306 - g 100 -9.4 -4.7416 | gap 1, opp_overlap 1527306 TTAAAATGGCAAAAA GGGC-AATTTAAA CTT TTTAAATTAGCCC TTTCTATGAATGGCT ribD 1526775 - 1527785 + | riboflavin biosynthesis protein RibD CJJ81176_1614 1527775 - 1528287 + | hypothetical protein TERM 1574 1528302 - 1528273 - T 100 -9.5 -5.243 | opp_overlap 1528273 1528282, overlap 1528277 CAAAGGATGAAAAAA TACACTAAAGTGT AAAA ACACTTTAGCATA CTGTTTTTAAATTTG TERM 1575 1528298 - 1528277 - T 85 -10.3 -3.69447 | opp_overlap 1528273 1528282, overlap 1528273 GGATGAAAAAATACA CTAAAGTGT AAAA ACACTTTAG CATACTGTTTTTAAA sdaA 1529659 - 1528295 - | L-serine ammonia-lyase sdaC 1530924 - 1529674 - | serine transporter TERM 1576 1530658 - 1530647 - G 83 -3 -5.69023 | AAAATAGCAAAAAAA TACA AAAG TGTA ATTAAAAATCCACCG TERM 1577 1531143 - 1531122 - R 100 -7.4 -6.04324 | opp_overlap 1531122 TCAAAAAAGAAAAAA TTTGGAAG ACTATG CTTCCAAA TTTTTGCATCAAATT TERM 1578 1531122 - 1531143 + r 81 -7.4 -4.67011 | opp_overlap 1531122 TCAAAAAAGAAAAAA TTTGGAAG ACTATG CTTCCAAA TTTTTGCATCAAATT CJJ81176_1617 1531601 - 1531185 - | hypothetical protein CJJ81176_1618 1532409 - 1531666 - | hypothetical protein exbB-2 1532555 - 1532992 + | TonB system transport protein ExbB exbD 1532964 - 1533374 + | biopolymer transport exbD protein TERM 1579 1533446 - 1533466 + G 72 -4.1 -5.0538 | ATACCTTTGCTTTTT GTCATTT TTCACTC AAATGAC TTTTTTAAAATGGAA CJJ81176_1621 1533371 - 1534054 + | TonB-dependent receptor, putative, authentic frameshift CJJ81176_1622 1534943 - 1534074 - | hypothetical protein TERM 1580 1534153 - 1534163 + g 70 -4 -4.90917 | overlap 1534157 AAATTCTGACTTAAT TCTT GCA AAGA TTTTTGCTTCAGTTT TERM 1581 1534659 - 1534641 - G 85 -10.4 -3.59262 | opp_overlap 1534641, overlap 1534652 TTTTACACTTTCAAA CCAATTTG AAA CAAATTGG TTTGCTTCGCCATTA TERM 1582 1534641 - 1534659 + g 93 -10.4 -3.91798 | opp_overlap 1534641 1534652 TTTTACACTTTCAAA CCAATTTG AAA CAAATTGG TTTGCTTCGCCATTA CJJ81176_1623 1535108 - 1534947 - | putative periplasmic protein CJJ81176_1624 1535203 - 1536186 + | hypothetical protein TERM 1583 1536251 - 1536266 + T 100 -6.1 -6.34616 | opp_overlap 1536251 AAATATTGCAATCAA GCCCA CGAAAA TGGGC TTTTTTTTATTTTAA aroC 1537361 - 1536273 - | chorismate synthase rnc 1538038 - 1537361 - | ribonuclease III rnhA 1538462 - 1538022 - | ribonuclease H CJJ81176_1628 1539435 - 1538449 - | hypothetical protein TERM 1584 1539241 - 1539221 - G 72 -4.1 -5.09225 | ATTTCAGCCAAAAAA CTTAAATTT CCA AAACTCAAG CTACTATTTCTTAAC dnaG 1539478 - 1541322 + | DNA primase CJJ81176_1630 1541404 - 1541676 + | NifU family protein CJJ81176_1631 1541663 - 1542214 + | hypothetical protein TERM 1585 1543420 - 1543432 + G 72 -6.3 -4.30844 | opp_overlap 1543415 1543414 CTCAAGAAATTAAAG GGATA AAA TATCC TTTTAGTGATAAAGT murE 1542198 - 1543481 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase CJJ81176_1633 1543485 - 1543796 + | hypothetical protein TERM 1586 1544667 - 1544657 - g 72 -5.4 -4.68645 | GATCCAAAATCAAAA GCAT CAA ATGC AGGATTTATGGTAGG CJJ81176_1634 1543817 - 1544887 + | PDZ domain-containing protein TERM 1587 1545211 - 1545227 + G 71 -3 -5.32944 | ATCTTAGTGGGCGAT GCTTTA AATAC TGAAGC TTTTTTAGTTCTAAG ispA 1544884 - 1545729 + | geranyltranstransferase TERM 1588 1547314 - 1547353 + G 72 -6.7 -4.0371 | gap 1, opp_overlap 1547287 1547321 1547324 AAAGAAAGCAAAGAC GCTAAATTTACACTTCTA GCAAG TGGAAGTG-AAGTTTGGC TTTGTCTAGAAAGTG tkt 1545739 - 1547637 + | transketolase CJJ81176_1637 1547639 - 1548748 + | ABC transporter, permease protein, putative CJJ81176_1638 1548749 - 1549471 + | ABC transporter, ATP-binding protein TERM 1589 1550239 - 1550227 - g 74 -7.7 -3.86916 | opp_overlap 1550232 TATGATGATATTAAA GCATC TTT GATGC AAAATTTAGAGCTTT TERM 1590 1550299 - 1550319 + G 72 -8.3 -3.33744 | opp_overlap 1550299 1550304, overlap 1550298 CTAATAGAAAATTTA CAAAACAGC CCT GCTGATTTG ATTTTTAAAGAAACC TERM 1591 1550314 - 1550304 - g 78 -6.8 -4.5538 | opp_overlap 1550299 1550298, overlap 1550299 AGAAAATTTACAAAA CAGC CCT GCTG ATTTGATTTTTAAAG CJJ81176_1639 1549474 - 1550364 + | ABC transporter, periplasmic substrate-binding protein, putative TERM 1592 1550924 - 1550934 + G 72 -4 -5.10497 | CTTGAATAAAATTGG CAAT GAG ATTG TTTTTTGGGTAAATT CJJ81176_1640 1550364 - 1550963 + | putative lipoprotein TERM 1593 1551099 - 1551085 - g 71 -7.2 -3.81027 | overlap 1551095 GTGAATGAATTTAAA GCAAAT CAA ATTTGC TCTCAAATCAATGAT TERM 1594 1551133 - 1551145 + G 71 -7.7 -3.40082 | opp_overlap 1551133, overlap 1551138 AATGATTTTATAGGA GCACT TCA AGTGC TTGATATGTCTTTAA CJJ81176_1641 1551019 - 1551519 + | hypothetical protein TERM 1595 1551537 - 1551575 + T 100 -12 -4.11371 | opp_overlap 1551561 ATAGTAATCGTTTGT TCTCTTTAAGCAAATATA ATA TATTTTAGCTTAAAGAGA TTTTCCAAACTCTTA TERM 1596 1551644 - 1551661 + T 77 -8.5 -3.60627 | opp_overlap 1551643 1551644 1551646 TAGCCTAACCCAAAC GAGATCT TAAA AGATCTC TTTAAACTAAAATAA TERM 1597 1551661 - 1551644 - T 71 -8.5 -2.85354 | opp_overlap 1551644, overlap 1551643 1551646 TAGCCTAACCCAAAC GAGATCT TAAA AGATCTC TTTAAACTAAAATAA TERM 1598 1551718 - 1551678 - T 93 -8.7 -4.82998 | opp_overlap 1551678 1551678 1551712, overlap 1551680 TTAAACTAAAATAAA TATTTAGATAATTTAACAA TTT TTATTAAATTATCTAAACC ATATTTATGTTTTAG TERM 1599 1551716 - 1551680 - T 100 -13.5 -4.00914 | opp_overlap 1551678 1551678 1551712, overlap 1551678 AAACTAAAATAAATA TTTAGATAATTTAACAA TTT TTATTAAATTATCTAAA CCATATTTATGTTTT map 1552649 - 1551891 - | methionine aminopeptidase murI 1553402 - 1552659 - | glutamate racemase nlpC 1553865 - 1553404 - | lipoprotein NlpC nhaA-1 1555043 - 1553874 - | Na+/H+ antiporter NhaA TERM 1600 1554475 - 1554449 - G 74 -6.6 -4.35581 | opp_overlap 1554455, overlap 1554466 CTAAAATATTTAAAA CAAGCATTGCCA AAA TAGCAATTCCTG CAACGACAAAAGCAA nhaA-2 1556188 - 1555040 - | Na+/H+ antiporter NhaA TERM 1601 1555089 - 1555108 + g 86 -9.4 -3.89501 | opp_overlap 1555089 ATGGCACTTAAAAAA CTTGCTAT TAAA ATAGCAAG TTTATCCGCATGTTC TERM 1602 1555108 - 1555089 - G 100 -9.4 -5.09225 | opp_overlap 1555089 ATGGCACTTAAAAAA CTTGCTAT TAAA ATAGCAAG TTTATCCGCATGTTC TERM 1603 1556317 - 1556285 - R 71 -2.8 -5.49729 | gap 1, opp_overlap 1556302 1556307, overlap 1556288 AATTATTTAAAAAAA CAGGCTCAAGATACC AACA AGT-TCTTAAGCTTG TTCTTAAGATATTTA CJJ81176_1647 1556512 - 1556330 - | hypothetical protein CJJ81176_1648 1556873 - 1557085 + | hypothetical protein TERM 1604 1557301 - 1557266 - f 82 -6.5 -5.05228 | opp_overlap 1557269, overlap 1557293 ATTAAATCACAAAAA TAAGATATATTTAAA AATTTA TTAAAATATATCTTA AATATAATTAATAAA TERM 1605 1559122 - 1559136 + G 75 -4.2 -5.24531 | CTGTTTATAGAGAAG GTGCAG AAA CTGTGC TTTTTTATCAAGCCT CJJ81176_1649 1557435 - 1559525 + | FTR1 family iron permease CJJ81176_1650 1559522 - 1560061 + | hypothetical protein TERM 1606 1560059 - 1560093 + F 86 -5 -5.77734 | opp_overlap 1560059 1560062 1560092, overlap 1560062 1560067 1560092 ACAGGCACGCCAAAA TGATTTTACACTCGGA TTT TCCGAGTGTTTAAATA TTTTTATTTTTATTT TERM 1607 1560090 - 1560062 - f 74 -8.9 -3.09831 | opp_overlap 1560059 1560062 1560067, overlap 1560059 GGCACGCCAAAATGA TTTTACACTCGGA TTT TCCGAGTGTTTAA ATATTTTTATTTTTA TERM 1608 1560062 - 1560091 + F 78 -7.3 -4.45545 | gap 1, opp_overlap 1560062 1560059, overlap 1560059 1560067 GGCACGCCAAAATGA TTT-TACACTCGGA TTT TCCGAGTGTTTAAA TATTTTTATTTTTAT TERM 1609 1560067 - 1560085 + F 100 -13.2 -3.89368 | opp_overlap 1560062 1560059, overlap 1560062 1560059 GCCAAAATGATTTTA CACTCGGA TTT TCCGAGTG TTTAAATATTTTTAT CJJ81176_1651 1560144 - 1561547 + | hypothetical protein CJJ81176_1652 1561537 - 1562826 + | ABC transporter, permease protein CJJ81176_1653 1562816 - 1563934 + | ABC transporter, permease protein CJJ81176_1654 1563934 - 1564584 + | ABC transporter, ATP-binding protein CJJ81176_1655 1564581 - 1565069 + | thiredoxin,-like protein CJJ81176_1656 1565264 - 1565533 + | thioredoxin family protein CJJ81176_1657 1565980 - 1565543 - | hypothetical protein CJJ81176_1658 1566214 - 1566071 - | hypothetical protein TERM 1610 1566367 - 1566377 + r 73 -6.8 -4.14739 | opp_overlap 1566362 1566367 GCAAGAAAGAGTAGA GAGC TTA GCTC TTTTACCATCACTAG CJJ81176_1659 1566585 - 1566448 - | hypothetical protein TERM 1611 1566731 - 1566757 + r 71 -4.6 -4.85433 | opp_overlap 1566743, overlap 1566753 TTTTGTATATTTTAA TTATTTTTCAAA TCT TTTGCAAGATAA TTTTTAAATTTATCT TERM 1612 1566995 - 1567009 + r 72 -7.8 -3.322 | CGAACCTCTGACCTA CGGCTT AGA AGGCCG TTGCTCTATCCAGCT CJJ81176_1665 1568202 - 1567354 - | DNA ligase CJJ81176_1666 1568864 - 1568202 - | hypothetical protein CJJ81176_1667 1569057 - 1568854 - | hypothetical protein eno 1570367 - 1569123 - | phosphopyruvate hydratase recA 1571398 - 1570367 - | recombinase A TERM 1613 1571331 - 1571343 + g 76 -6.3 -4.55721 | AGTCTTAAAATAGTG CCTTT TCC AAAGG TTTTATCTAAACTTT CJJ81176_1670 1571505 - 1572365 + | hypothetical protein fliQ 1572377 - 1572646 + | flagellar biosynthesis protein FliQ murB 1572643 - 1573419 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1614 1573436 - 1573462 + T 86 -3.2 -6.01187 | AATTTTCAATATATC TTTAAATTAATT GAT AGTTAATTTTAA TTTTTTTATTTCATT CJJ81176_1673 1574206 - 1573442 - | hypothetical protein cysQ 1575016 - 1574252 - | cysQ protein TERM 1615 1575062 - 1575089 + r 73 -8.6 -3.27278 | opp_overlap 1575062, overlap 1575042 1575061 AATTATACAAGAAGA TTTTGTGGAATT TTTA ATTTCCACAAAA ATTTTAATTAAATTT TERM 1616 1575089 - 1575062 - R 77 -8.6 -3.54548 | opp_overlap 1575042 1575062 1575061 AATTATACAAGAAGA TTTTGTGGAATT TTTA ATTTCCACAAAA ATTTTAATTAAATTT gltA 1576365 - 1575097 - | citrate synthase TERM 1617 1575412 - 1575430 + g 71 -4.6 -4.83615 | AAGCTTTTTCAGTAC TTTTGCTC TAG GATCAAAA TTTTTATAAACCCTA TERM 1618 1575846 - 1575836 - G 73 -8.2 -3.39327 | opp_overlap 1575836 1575840 TGTTTATATCTATAA GCGG TGG CCGC TATAGTAGGGATTTT CJJ81176_1676 1577655 - 1576480 - | sodium/hydrogen exchanger family protein TERM 1619 1577543 - 1577529 - G 75 -7.2 -4.17048 | TTGCCCCTAAAATAA TTTCAG TAG CTGAAA GAGGCAAGCGTAAAA TERM 1620 1577578 - 1577559 - G 70 -5.8 -4.19953 | gap 1 GAGGCAAGCGTAAAA TTCT-CGCA ATA TGCGGAGAA AAAAGTAAGCATAAA bioB 1578472 - 1577636 - | biotin synthase topA 1580576 - 1578474 - | DNA topoisomerase I TERM 1621 1579857 - 1579871 + g 71 -7.2 -3.80855 | overlap 1579853 TTTACTTTCAATGTC GCTTAT AGT ATAAGC TTCATTTTTACAAGC TERM 1622 1580710 - 1580696 - H 72 -4.4 -4.92812 | TCATAACAAAATAAA TAAAAT ATA ATTTTA AGTAATTTTAAATAC TERM 1623 1580883 - 1580906 + G 79 -8.2 -3.8766 | TTTCTATGGCCGCTA TGACTATGCT AGGA AGCGTGGTCA TTTCATCTGCTCTGC TERM 1624 1581507 - 1581519 + G 81 -2.7 -5.67967 | overlap 1581508 GGCAATTTTTCCCTA TCTAT TTT ATAGG TTTTTTTATCATGGT TERM 1625 1581603 - 1581581 - g 82 -8.6 -3.94067 | opp_overlap 1581583 1581596, overlap 1581583 TACTATATAGAAGAA CATTTAGGAT TGG ATCCTAAATA TATAGGTATTTCGAT TERM 1626 1581601 - 1581583 - g 77 -9 -3.55061 | opp_overlap 1581583 1581596, overlap 1581581 CTATATAGAAGAACA TTTAGGAT TGG ATCCTAAA TATATAGGTATTTCG TERM 1627 1581583 - 1581601 + G 72 -9 -2.96638 | opp_overlap 1581583 1581581, overlap 1581596 CTATATAGAAGAACA TTTAGGAT TGG ATCCTAAA TATATAGGTATTTCG CJJ81176_1679 1580771 - 1582042 + | major facilitator superfamily protein CJJ81176_1680 1584122 - 1582110 - | dipeptidyl-peptidase CJJ81176_1681 1584430 - 1584119 - | hypothetical protein CJJ81176_1682 1584789 - 1584418 - | hypothetical protein CJJ81176_1683 1585052 - 1584804 - | hypothetical protein CJJ81176_1684 1585321 - 1585049 - | hypothetical protein TERM 1628 1585545 - 1585510 - R 100 -8.5 -6.17669 | opp_overlap 1585511 1585513, overlap 1585497 1585511 AATAAAATAAAAAAA TTATTTCAACAAGGA AAATTA CCCTTGTTGAAATAT ATTACAAACCTACCG TERM 1629 1585511 - 1585544 + r 85 -11.3 -3.02511 | opp_overlap 1585497 1585510 1585511, overlap 1585513 ATAAAATAAAAAAAT TATTTCAACAAGG AAAATTAC CCTTGTTGAAATA TATTACAAACCTACC TERM 1630 1585544 - 1585511 - R 100 -12 -4.25111 | opp_overlap 1585511 1585513, overlap 1585497 1585510 ATAAAATAAAAAAAT TATTTCAACAAGGA AAATTA CCCTTGTTGAAATA TATTACAAACCTACC TERM 1631 1585513 - 1585542 + r 77 -9.5 -3.07013 | opp_overlap 1585497 1585511 1585510, overlap 1585511 AAAATAAAAAAATTA TTTCAACAAGG AAAATTAC CCTTGTTGAAA TATATTACAAACCTA secY 1586812 - 1585547 - | preprotein translocase subunit SecY TERM 1632 1585592 - 1585602 + g 70 -4 -4.93898 | opp_overlap 1585592 TTTACTCATATAAAT TTGA GCT TCAA TTTTTCTCATCGTAT rplO 1587204 - 1586812 - | 50S ribosomal protein L15 rpsE 1587652 - 1587209 - | 30S ribosomal protein S5 rplR 1588020 - 1587664 - | 50S ribosomal protein L18 rplF 1588566 - 1588030 - | 50S ribosomal protein L6 rpsH 1589040 - 1588645 - | 30S ribosomal protein S8 rpsN 1589235 - 1589050 - | 30S ribosomal protein S14 rplE 1589782 - 1589237 - | 50S ribosomal protein L5 TERM 1633 1589616 - 1589638 + g 70 -4.3 -4.93696 | gap 1, opp_overlap 1589616, overlap 1589621 GCAATTAAAGAAATA GTATCTGCAA CATT TTGCA-ATAC TTTTTGATCTTTAGC rplX 1590019 - 1589786 - | 50S ribosomal protein L24 TERM 1634 1589909 - 1589919 + g 72 -5.4 -4.70659 | ACATCCTTCAACTAC CACT TTA AGTG TTTTTGGATATACCG rplN 1590387 - 1590019 - | 50S ribosomal protein L14 rpsQ 1590638 - 1590387 - | 30S ribosomal protein S17 rpmC 1590833 - 1590648 - | 50S ribosomal protein L29 TERM 1635 1590756 - 1590776 + g 70 -5.5 -4.24123 | opp_overlap 1590755 CTTTTGTTTTAAAGT GAATAAAAG CAC CTTTTTTTC TTTTAGCATTGTTGC rplP 1591245 - 1590820 - | 50S ribosomal protein L16 rpsC 1591949 - 1591248 - | 30S ribosomal protein S3 rplV 1592392 - 1591949 - | 50S ribosomal protein L22 rpsS 1592684 - 1592403 - | 30S ribosomal protein S19 rplB 1593516 - 1592686 - | 50S ribosomal protein L2 TERM 1636 1592807 - 1592827 + g 76 -9.7 -2.83677 | GAATTTTTCTTACCT TCACCCCCA CCG TGCGGGTGA TCTACTGGGTTCATT rplW 1593799 - 1593518 - | 50S ribosomal protein L23 rplD 1594416 - 1593802 - | 50S ribosomal protein L4 rplC 1594988 - 1594413 - | 50S ribosomal protein L3 rpsJ 1595309 - 1594998 - | 30S ribosomal protein S10 TERM 1637 1595419 - 1595455 + r 95 -9.7 -4.70879 | opp_overlap 1595417 1595445 AATTTGATGAAATTT TTCTATTATTTTCCTTT TAA AAAGGATAAAAATAGAA TTTTTAGAATTTAAA CJJ81176_0003 1596268 - 1595507 - | RNA pseudouridine synthase family protein TERM 1638 1595962 - 1595947 - G 88 -9 -4.41895 | AATCTGTAAGCAAAA GCAAGC CCTC GCTTGC ATAATCCAGCCTACC TERM 1639 1596285 - 1596298 + r 84 -5.9 -5.15969 | opp_overlap 1596285, overlap 1596277 TGATCTTCCTTAAAA GGGCG TTTT TGCCC TTTTTTACATTACAA CJJ81176_0004 1598291 - 1596303 - | metallo-beta-lactamase family protein TERM 1640 1598071 - 1598094 + gr 100 -5.4 -5.97575 | TTACCTGTGAGTTTT GAAGGAAGAT TGCG ATTTTTCTTC TTTTTTTTCTCAGTT TERM 1641 1598115 - 1598130 + gr 76 -6.2 -4.56133 | TTTCTCAGTTTTATT TTCTGA GTTT TCAGAA TTTTCCTTGTTGGAA ksgA 1599066 - 1598266 - | dimethyladenosine transferase TERM 1642 1598458 - 1598480 + gH 82 -9.4 -3.55801 | TTTAAAACAGTCTTT TAGAAAATTT TTG AAATTTTCTA TTTCGCAAAGTTCAT TERM 1643 1599073 - 1599118 + H 79 -6.5 -4.89393 | opp_overlap 1599073 TTTAACCATAAGAAA TAATTTTATCTAAAAATTCTT AATT AAGTCTTTTTAGGTAGAATTA TTTTTGTAAAATTTC TERM 1644 1599427 - 1599412 - g 86 -6.2 -5.35224 | overlap 1599407 TTTAGAAAAAGAAAA TGTTTC TCGT GAAACA ATCAAGATCAATTCT CJJ81176_0006 1599146 - 1599682 + | hypothetical protein CJJ81176_0007 1599705 - 1600775 + | radical SAM protein TERM 1645 1601253 - 1601273 + F 77 -4.9 -5.10665 | opp_overlap 1601253 1601268, overlap 1601248 TTATAAATTCTTAAA TTTTTGATA AAA TATTAAAAA TTTTATTTATTAGGT TERM 1646 1601874 - 1601858 - g 87 -3.8 -5.86332 | CCAATGGAAAAAAAA CTTTTT AAACA AAAAAG AACAAATGAAATATA TERM 1647 1602170 - 1602185 + G 72 -6.2 -4.20491 | opp_overlap 1602169 1602170 ATTCCATATAGGAAT TTTGGT TTTG ACCAAA TATTTTTATTACTCT CJJ81176_0010 1601640 - 1602251 + | lipopolysaccharide core biosynthesis protien, putative TERM 1648 1602432 - 1602416 - f 82 -10.9 -2.62616 | opp_overlap 1602419, overlap 1602419 TCAGCTGGGAGAGCA CAACGCT GGC AGCGTTG TGGTCAGCGGTTCGA TERM 1649 1602929 - 1602954 + G 71 -7.7 -3.53444 | gap 1, opp_overlap 1602929, overlap 1602930 AATTTTTGCGAAAAT TTTGCCTTG-GA AAA TCACAAGGCAAG TTTAAGAGCAGATAC TERM 1650 1602930 - 1602953 + G 70 -9 -2.71924 | gap 1, opp_overlap 1602929, overlap 1602929 ATTTTTGCGAAAATT TTGCCTTG-GA AAA TCACAAGGCAA GTTTAAGAGCAGATA CJJ81176_0013 1602572 - 1603102 + | acetyltransferase leuD 1603684 - 1603082 - | isopropylmalate isomerase small subunit leuC 1605092 - 1603686 - | isopropylmalate isomerase large subunit leuB 1606161 - 1605085 - | 3-isopropylmalate dehydrogenase leuA 1607693 - 1606158 - | 2-isopropylmalate synthase CJJ81176_0018 1608013 - 1608642 + | hypothetical protein TERM 1651 1608652 - 1608672 + T 73 -8.4 -3.1996 | opp_overlap 1608652, overlap 1608642 GGTTGATTTCATTAA TGCAAGTT ATAAA AACTTGCA TTAGATTAAAATTTA TERM 1652 1608672 - 1608652 - T 73 -8.4 -3.16564 | opp_overlap 1608652 1608642 GGTTGATTTCATTAA TGCAAGTT ATAAA AACTTGCA TTAGATTAAAATTTA CJJ81176_0019 1609322 - 1608678 - | hypothetical protein TERM 1653 1609348 - 1609366 + r 100 -9 -5.1764 | opp_overlap 1609347 CTTATAATAAAATTC GATCTAAA AAA TTTAGATC TTTTTATATTATATA CJJ81176_0020 1609843 - 1609460 - | 7-cyano-7-deazaguanine reductase TERM 1654 1609717 - 1609704 - G 72 -6.7 -4.10453 | TAAATCGTTGCAAAA TCAGG ATAA CCTGA ACGCGGACAACAACA CJJ81176_0021 1610003 - 1610602 + | hypothetical protein TERM 1655 1610634 - 1610604 - T 72 -7.7 -3.68261 | opp_overlap 1610612 1610629, overlap 1610607 1610612 CTACAAGAGTTTAAA TCATCAAAGCACA AAAGG TGTGCTTTGATAC ACATCATAATTGAGC TERM 1656 1610631 - 1610607 - T 90 -11.6 -2.94299 | opp_overlap 1610612 1610629, overlap 1610604 1610612 CAAGAGTTTAAATCA TCAAAGCACA AAAGG TGTGCTTTGA TACACATCATAATTG metA 1611488 - 1610607 - | homoserine O-succinyltransferase metX 1612842 - 1611571 - | homoserine O-acetyltransferase TERM 1657 1612969 - 1612955 - R 87 -11.4 -3.3071 | ATACGAGTAGATTAA GCGTGC CAA GCACGC ATACAGAAAGAAGAA TERM 1658 1613081 - 1613065 - R 85 -5.3 -5.42198 | overlap 1613060 1613072 CTTTAAAAAATAAAA TTAAAAT TAA ATTTTAA AAAATTTATATCACA TERM 1659 1613150 - 1613107 - R 93 -10.6 -4.10657 | gap 1, opp_overlap 1613112, overlap 1613108 TCACATTGCTTAAAA TTTTATTGC-AACTCACCCCT AGC AAGAGTGAGTTAGCAATAAAT TGAAGGCAGTTCAAG TERM 1660 1613149 - 1613108 - R 100 -14.1 -3.06073 | gap 1, opp_overlap 1613112, overlap 1613107 CACATTGCTTAAAAT TTTATTGC-AACTCACCCCT AGC AAGAGTGAGTTAGCAATAAA TTGAAGGCAGTTCAA CJJ81176_0024 1613242 - 1613087 - | hypothetical protein TERM 1661 1613237 - 1613213 - G 73 -9.3 -2.70525 | opp_overlap 1613171 1613208, overlap 1613198 1613208 1613212 GGCTTGTAAAGCAAG GCTTGCTCCCT TTA AGGGAGCAAAA AACAATATTTTATAG flgE 1615784 - 1613268 - | flagellar hook protein FlgE TERM 1662 1613739 - 1613751 + g 76 -7.7 -4.00042 | TTTTATTTGTTGATT TGGTG CGG CACCA TTGTTTGGTGAGAAA TERM 1663 1615589 - 1615609 + g 70 -8.3 -3.09933 | overlap 1615591 CGCCAAGACCGATTT GAAGTGGAT TAG ATCCACCTC TTCCATCAGTTGGAG ruvC 1616459 - 1615977 - | Holliday junction resolvase SEQUENCE gi|121999251|ref|NC_008790.1| Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence (length 45025) CJJ81176_pTet0001 66 - 1139 + | hypothetical protein TERM 1 1185 - 1173 - f 71 -2.7 -5.45726 | TATATCCCAAAAAAA TGACT TAT AATCA AATGATGGAAGAGTG TERM 2 1370 - 1360 - gf 72 -4 -5.1417 | opp_overlap 1360, overlap 1354 TGATAAAATCAAAAA TCAT TCT ATGA TTTTATGCACAGAAA CJJ81176_pTet0002 1313 - 1501 + | hypothetical protein CJJ81176_pTet0003 1416 - 1796 + | cpp7 TERM 3 1978 - 1968 - g 78 -4 -5.43514 | opp_overlap 1968 AAAATAACTAAAAAA GAAA TAT TTTC TTATGCAATTTTTAT CJJ81176_pTet0004 1938 - 2336 + | cpp8 TERM 4 2523 - 2540 + G 81 -7.1 -4.58943 | CCGAGCTTGAAACTC TATTTGC TACA GCAAATA TTATTTTTGTATCGA CJJ81176_pTet0005 2333 - 2845 + | cpp9 TERM 5 3382 - 3366 - g 74 -5.2 -4.87389 | overlap 3377 TATTTTAAAAACAAA TCAAGA GCTAA TCTTGA AAAAGATAGGAGAGT CJJ81176_pTet0006 2842 - 3399 + | cpp10 CJJ81176_pTet0007 3404 - 3670 + | cpp11 CJJ81176_pTet0008 3729 - 4289 + | cpp12 CJJ81176_pTet0009 4292 - 4558 + | cpp13 TERM 6 8584 - 8567 - g 70 -5.7 -4.21438 | overlap 8564 8583 TATTGTAACAAATAA TGATATT ATGA AATATCA AAAAGATTTCGTGCC CJJ81176_pTet0010 4605 - 10403 + | cpp14 TERM 7 10428 - 10407 - T 90 -11.7 -2.99459 | opp_overlap 10407, overlap 10404 ATTGAAATATAATTA GTAAAAGGC AATT GCCTTTTAC TTTAATAAATAAACA TERM 8 10407 - 10428 + T 95 -11.7 -3.76224 | opp_overlap 10407 10404 ATTGAAATATAATTA GTAAAAGGC AATT GCCTTTTAC TTTAATAAATAAACA CJJ81176_pTet0011 11129 - 10425 - | cpp16 TERM 9 10492 - 10513 + g 81 -2.9 -5.72622 | ATAAGCTTAATTCTT GCACGAAGG GTAT CATTCTTGC TTTTTTCTTTATAGA CJJ81176_pTet0012 12543 - 11155 - | cpp17 TERM 10 12087 - 12102 + g 76 -2.6 -5.52079 | TTTTTAAAGTAGTAA TTACAG CTTG TTGTAA TTTTTCTTTTGGTGT TERM 11 12155 - 12144 - G 72 -4.4 -5.08824 | opp_overlap 12144, overlap 12125 CTTTCATGGAAAAAA CCAT ATTA ATGG TATGTCTTTTTTCTT CJJ81176_pTet0013 13094 - 12543 - | cpp18 TERM 12 12791 - 12803 + g 72 -6.3 -4.35644 | opp_overlap 12791 TTATGGAGTTTAATA GCAAA AAT TTTGC TTGTTTTGTAATACT TERM 13 13128 - 13171 + H 100 -17.2 -2.81471 | overlap 13117 13126 CCTCGCAGAGTTTTT GCCTTTTATTTTTTAAAAAG GTAA CTTTTTGAGAAATAAAAGGC TATCCTGCAATTATC CJJ81176_pTet0014 13295 - 13576 + | cpp19 TERM 14 13773 - 13761 - g 85 -4.9 -5.52986 | AGCTTACTAAAAAAA GATTT TTC AAATC AATATATTAAATTTG TERM 15 14135 - 14110 - g 72 -4.9 -4.85545 | opp_overlap 14111, overlap 14111 AGCAAATTAATAAAA GTTCATTTTTT AAAG AAAAAATGAAT GAATTTTTCAAAAAA TERM 16 14134 - 14111 - g 73 -8.4 -3.497 | opp_overlap 14111, overlap 14110 GCAAATTAATAAAAG TTCATTTTTT AAAG AAAAAATGAA TGAATTTTTCAAAAA CJJ81176_pTet0015 13605 - 14216 + | cpp20 CJJ81176_pTet0016 14220 - 14873 + | cpp21 TERM 17 14902 - 14884 - f 78 -4.4 -5.27779 | overlap 14885 GTTAAGATTAAAAAA TGGGACAC AAG GAGTCCCT CGAATTTAAAAGGTG TERM 18 14901 - 14885 - f 76 -7.9 -3.75583 | overlap 14884 TTAAGATTAAAAAAT GGGACAC AAG GAGTCCC TCGAATTTAAAAGGT TERM 19 14917 - 14933 + F 79 -7.9 -3.89938 | TCGAATTTAAAAGGT GGGCTAC TAG GAAGCCC TTTGAATTTCATTGT TERM 20 15170 - 15154 - g 76 -6.7 -4.45807 | opp_overlap 15155 CACCAAAATAAAGAA TTTTCAT TTG ATGAAAA TGAAGTCTTAACAGC CJJ81176_pTet0017 14992 - 16218 + | cpp22 TERM 21 16241 - 16270 + F 80 -9.7 -3.41961 | opp_overlap 16241 16244 16268, overlap 16244 16266 16268 TACTCTTTGTAATCA TAATATATAAAAA ATAT TTTTTATATATTA TTAGTTAATAATAGT TERM 22 16270 - 16241 - f 75 -9.7 -2.71144 | opp_overlap 16241 16244 16266 16268, overlap 16244 16268 TACTCTTTGTAATCA TAATATATAAAAA ATAT TTTTTATATATTA TTAGTTAATAATAGT TERM 23 16244 - 16267 + F 71 -7 -3.84246 | opp_overlap 16241 16244, overlap 16241 16266 TCTTTGTAATCATAA TATATAAAAA ATAT TTTTTATATA TTATTAGTTAATAAT CJJ81176_pTet0018 16326 - 16589 + | cpp23 TERM 24 16641 - 16620 - T 74 -6.7 -4.20106 | gap 1, opp_overlap 16624 AAACTCTAGGTAAAA GCATACAACA AAT TGTTG-ATGC TATAAGACAAGTAGG TERM 25 16692 - 16731 + T 86 -7.6 -4.81685 | opp_overlap 16692 16695 AACTTTAAAAGTAAA TAACTATTATATATTA AAAATTAC TGATATATAATAGTTA TTTTTAGTAATTAAT TERM 26 16786 - 16760 - T 70 -7.5 -3.63805 | ATGTTATATGTTAAA GTGTAATACAA AAAGA TTATATTACAC AAATCTTGATAAAAG CJJ81176_pTet0019 17068 - 16811 - | hypothetical protein TERM 27 16991 - 16980 - G 71 -3 -5.32608 | opp_overlap 16984, overlap 16981 16984 16987 AAAAAACTTAAAAAA GTTA CAAT TAAC ATAATTGTTAAATCA CJJ81176_pTet0020 17287 - 17102 - | hypothetical protein TERM 28 17173 - 17192 + g 71 -6.6 -3.90038 | opp_overlap 17173 17172 TTTTAAAATAAAAGT TCAAAAAT TTTA ATTTTTGA TTTACCTTATTTAAT TERM 29 17392 - 17428 + H 93 -8.3 -4.86731 | ATTTAATAATTTTTG TTGACTTTAATGTAA GTGTATA TTACATTTAAGTCAA TTTTATTTGAAAAAA CJJ81176_pTet0021 17560 - 17778 + | hypothetical protein CJJ81176_pTet0022 17771 - 17974 + | hypothetical protein CJJ81176_pTet0023 17978 - 19771 + | cpp26 CJJ81176_pTet0024 20508 - 19894 - | cpp27 CJJ81176_pTet0025 20882 - 20505 - | hypothetical protein TERM 30 20754 - 20783 + g 76 -5.1 -5.14563 | opp_overlap 20780, overlap 20756 20758 ATAACCTGAATATTG TCTATGCTCGAAA CCAT TTTCAAGCATAAA TTTTTTAATCAAAGA CJJ81176_pTet0026 21196 - 20873 - | cpp29 CJJ81176_pTet0027 21367 - 21630 + | cmgB2 TERM 31 22373 - 22355 - g 78 -3.2 -5.63645 | opp_overlap 22358, overlap 22358 22371 TGAAAATAGAAAAAA CAACTTTT ATG AAAAGTTC TTTTGAAAATAAAAG TERM 32 22370 - 22358 - g 71 -4.9 -4.8277 | opp_overlap 22358, overlap 22355 AAATAGAAAAAACAA CTTTT ATG AAAAG TTCTTTTGAAAATAA CJJ81176_pTet0028 21643 - 24411 + | cmgB3/4 TERM 33 24800 - 24788 - g 71 -4.9 -4.83759 | AACGAAATGGAAAAA CTTTT ACA AAAAG AAATTAAAAGCCCTA CJJ81176_pTet0029 24422 - 24988 + | cpp32 CJJ81176_pTet0030 24985 - 25650 + | cpp33 CJJ81176_pTet0031 25684 - 26109 + | single-strand binding protein family TERM 34 26333 - 26302 - g 81 -8.3 -4.09215 | TATATCAATCATAAA TCTATATCTTCTT TTTTAC AAGAAGATATAAA CCAAGCATTAGATAA CJJ81176_pTet0032 26125 - 26400 + | cpp35 TERM 35 26597 - 26566 - g 81 -9.5 -3.59979 | overlap 26567 TTTTCTGAGGTTAAA TTTAGCCACAGGG TTGCAG CCCTATGGCTAAC CCCACAAAATTATAT TERM 36 26596 - 26567 - g 100 -13 -2.75844 | overlap 26566 TTTCTGAGGTTAAAT TTAGCCACAGGG TTGCAG CCCTATGGCTAA CCCCACAAAATTATA TERM 37 27060 - 27048 - g 90 -4.9 -5.71983 | TCAATCAGAAAAAAA CATTT GCA AAATG AATTTAATCACTTAT CJJ81176_pTet0033 26404 - 27375 + | cmgB5 TERM 38 27427 - 27406 - g 74 -6.7 -4.20106 | gap 1, opp_overlap 27410 AAACTCTAGGTAAAA GCATACAACA AAT TGTTG-ATGC TATAAGACAAGTAGG TERM 39 27780 - 27792 + G 82 -7.7 -4.39329 | overlap 27774 GCTATTTTAGCTATT GTAGC AAT GCTAC TTTGTTATGTAGGAT CJJ81176_pTet0034 27372 - 28370 + | cmgB6 CJJ81176_pTet0035 28360 - 28527 + | hypothetical protein CJJ81176_pTet0036 28517 - 29179 + | cmgB8 CJJ81176_pTet0037 29176 - 30063 + | cmgB9 CJJ81176_pTet0038 30090 - 31265 + | cmgB10 CJJ81176_pTet0039 31246 - 32238 + | cmgB11 TERM 40 32272 - 32285 + G 71 -4.5 -4.80959 | ATTCAAATGATTTTT CTTGC TATA GCGAG TTTTATTCTCACTTA CJJ81176_pTet0040 32239 - 34050 + | cmgD4 TERM 41 34423 - 34439 + G 71 -2.3 -5.45813 | opp_overlap 34438, overlap 34425 TCCTATTGAGCGTGA TTTTAAC AAA GTTAATA TTTTATTTTTTAATA CJJ81176_pTet0041 34031 - 34468 + | cpp44 CJJ81176_pTet0042 34480 - 35244 + | cpp45 TERM 42 35460 - 35484 + G 82 -8 -4.42118 | opp_overlap 35460 35462, overlap 35456 GAAAGCAATATTATA GAGCTAGATA ATACC TATTTAGCTC TTATTTCTTATTTTA TERM 43 35616 - 35602 - g 81 -5.8 -5.22943 | ATGAAATTCAAAAAA TATCAT TGG ATGATA AACTTAAACAATATA TERM 44 36013 - 35989 - g 90 -3.7 -6.28401 | CAAAAAACAAAAAAA CTATTTTCAAT GAG AATAAAAATAG TATTCAAATCACACT CJJ81176_pTet0043 35247 - 36044 + | cpp46 CJJ81176_pTet0044 36115 - 36735 + | cpp47 TERM 45 36732 - 36768 + F 82 -8.2 -4.19799 | opp_overlap 36733 36739 36755, overlap 36729 36726 36733 36739 36756 CCAAGAGTTTGGAAG ATAAAAATATGCACCT CATAA AGGTGCATATTTATAG TTATTATTATTTATT TERM 46 36767 - 36733 - f 91 -12.4 -3.04248 | opp_overlap 36732 36729 36726 36733 36739 36756, overlap 36739 36755 CAAGAGTTTGGAAGA TAAAAATATGCACCTC ATA AAGGTGCATATTTATA GTTATTATTATTTAT TERM 47 36733 - 36767 + F 90 -11.7 -3.09439 | opp_overlap 36733 36739 36755, overlap 36732 36729 36726 36739 36756 CAAGAGTTTGGAAGA TAAAAATATGCACCT CATAA AGGTGCATATTTATA GTTATTATTATTTAT TERM 48 36761 - 36739 - f 100 -11.4 -5.0916 | opp_overlap 36733 36732 36729 36726 36739 36756, overlap 36733 36755 TTTGGAAGATAAAAA TATGCACCTC ATA AAGGTGCATA TTTATAGTTATTATT TERM 49 36739 - 36761 + F 93 -10.7 -4.16767 | opp_overlap 36739 36733 36755, overlap 36733 36732 36729 36726 36756 TTTGGAAGATAAAAA TATGCACCT CATAA AGGTGCATA TTTATAGTTATTATT TERM 50 37261 - 37245 - g 71 -2.3 -5.48163 | AAAGAAAGTAAAAAA CAATTAA AAA TTATTTG CGATTTAATCCATAG TERM 51 38765 - 38752 - g 81 -3.9 -5.5112 | TTGAGCAACAAAAAA TGATA GAAA TATCA GAATTAAGAAGAGAA CJJ81176_pTet0045 36999 - 39191 + | DNA topoisomerase III TERM 52 39521 - 39502 - g 80 -2.2 -5.76633 | overlap 39503 TGACACATAAAAAAA CTTTTGAA TTCG CTCAAAAA ATACTAGAAAAAGTC CJJ81176_pTet0046 39297 - 40718 + | cpp50 TERM 53 40835 - 40864 + G 71 -3 -5.26119 | TGAGTATTCTAATAT TGTTTTTTATTG CGAAAA CGATGAAGAACA TTTTATTTTTACAGA CJJ81176_pTet0047 40737 - 40916 + | hypothetical protein TERM 54 40920 - 40942 + F 100 -9.1 -5.05228 | ATAAACAGATGATTA GTGGCAGGG GGAAA TCCTGCCGC TTTTTCTGCTTTAGT TERM 55 41161 - 41188 + F 75 -9.2 -3.1382 | CATGTAATTTTATAT GCCCGAAAACAT ATAA GTGTTTTGGGGC TATTGGAGTTATTTA TERM 56 41202 - 41233 + F 100 -13.2 -4.90296 | overlap 41229 GCTATTGGAGTTATT TACCCAGTGATAGG AGTA TTTATCACTGGGTA TTTTTATGCCCTTTT TERM 57 41229 - 41244 + F 81 -5.4 -5.1615 | overlap 41202 GGAGTATTTATCACT GGGTAT TTTT ATGCCC TTTTTTGGGTGTTGA TERM 58 41720 - 41706 - g 71 -8.6 -2.75343 | opp_overlap 41717, overlap 41705 41711 GGTATATCGGGAAAT GAAAGC AAA GCTTTC TTCGGAAATTATAGT TERM 59 43003 - 42987 - g 88 -9.5 -4.07526 | opp_overlap 42990, overlap 42990 AAGTACTCAGATAAA GAATGAC GAG GTCATTC TGAAAGGAGAAATCC CJJ81176_pTet0048 41275 - 43194 + | tetO TERM 60 43426 - 43466 + F 100 -10.6 -5.37171 | gap 1, opp_overlap 43438 GACGCTTAAGACGCA GAGCCGATGAAATTGTGGA ACAA TTCACGAAT-CATCGGCTC TTTTTGTTTCGTATT CJJ81176_pTet0049 43589 - 43771 + | hypothetical protein CJJ81176_pTet0050 43962 - 44285 + | hypothetical protein CJJ81176_pTet0051 44600 - 44244 - | hypothetical protein TERM 61 44374 - 44361 - G 71 -6.7 -3.89055 | opp_overlap 44362 ACAGAGGGCTACAAA GCTTC TTGA GAAGC AGTCTGATACACTTA CJJ81176_pTet0052 44772 - 45002 + | cpp4