TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.839484 %AT, 145593 nt, 1917 terms. Intergenic: 0.781308 %AT, H2T: 28694 nt, 169 terms; T2T: 1967 nt, 58 terms; H2H: 11601 nt, 51 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|116334902|ref|NC_008512.1| Candidatus Carsonella ruddii PV, complete genome (length 159662) TERM 1 783 - 764 - g 72 -3 -5.94743 | overlap 758 CAAAAAAAATAAAAA TTTTATCT AAAA AAATAAAA ATGATGGATACAGCA CRP_001 1 - 1317 + | tRNA modification GTPase TERM 2 1730 - 1708 - gf 85 -2.9 -6.38039 | opp_overlap 1716, overlap 1725 GATTTAAAAAAAAAA TTTTAATCT TTAAC AAATTAAAA TTTTTTAATATAGCA CRP_002 1314 - 2816 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3 2815 - 2805 - gf 79 -2.6 -6.19443 | opp_overlap 2805 TATATTAAAAAAAAA TATT TTA AATA ATTTTCTTAATTTTA TERM 4 3103 - 3083 - gf 84 -7.7 -4.74598 | TAAATTTAAAACAAA TTGAAATTG TTC CAACTTCAA ATATAAATATAACTT CRP_003 2785 - 3477 + | F0F1-type ATP synthase A subunit CRP_004 3486 - 3719 + | F0F1-type ATP synthase C subunit CRP_005 3721 - 4176 + | putative F0F1-type ATP synthase B subunit TERM 5 4237 - 4280 + G 70 -8.7 -2.87564 | opp_overlap 4234 4235, overlap 4239 TTTTTTAATAAATTT TTTTTATTTTTTTAATAAA TGTAAT TTTATTAAAAAAAAAAAAA TATATAAAAAAATAA CRP_006 4169 - 4354 + | hypothetical protein CRP_007 4344 - 5789 + | F0F1-type ATP synthase alpha subunit CRP_008 5786 - 6544 + | F0F1-type ATP synthase gamma subunit CRP_009 6541 - 7884 + | F0F1 ATP synthase subunit beta CRP_010 7881 - 8123 + | hypothetical protein TERM 6 8211 - 8198 - g 79 -2.5 -6.41805 | opp_overlap 8206, overlap 8206 TTAGTAAAAAAAAAA TAAAA AATT TTTTA AATAATAAAAATATT TERM 7 8672 - 8660 - g 77 -3.5 -6.09888 | TTTTAATAAAAAAAA TTTTT CCA AAAAA GAAAATACTTATAAG TERM 8 8950 - 8940 - g 72 -2.6 -5.98781 | opp_overlap 8949 GATAATTAAAAAAAA TAAA ATA TTTA AAAGTTATATTTTTA CRP_011 8110 - 8997 + | ornithine carbamoyltransferase CRP_012 9521 - 9084 - | 3-dehydroquinate dehydratase CRP_013 11407 - 9497 - | transketolase TERM 9 9784 - 9765 - GH 70 -5.2 -4.90079 | ATTTGAATAATAAAA TATTTTTT TAAG AAAAAATA ACATTCAAAACAGAT TERM 10 9810 - 9795 - GH 71 -6.2 -4.32951 | opp_overlap 9794 AAATAACATTCAAAA CAGATT TCTA AATCTG ATCCATTAGAAACAA TERM 11 9872 - 9892 + gH 70 -7.1 -3.74158 | opp_overlap 9877, overlap 9871 9877 TGAATAAGTACCAGT TATAATATT TTT AATATTATA TATTTTAATAAAATT TERM 12 10909 - 10889 - GH 71 -7.1 -3.91332 | opp_overlap 10870 10883 10894, overlap 10867 10870 ACTATCATATAATAA TATAATATT GTT AATATTATA GCATCCACAAAAAGA TERM 13 11407 - 11421 + Gg 84 -4.4 -6.34424 | opp_overlap 11407 TTATGTTATATAACA TTTTAA AAT TTAAAA TTTTTTTTTTCAAAA TERM 14 12512 - 12532 + GH 72 -2.7 -5.75342 | opp_overlap 12501 12512 12515, overlap 12515 12516 AATATTTGATAAAAA TAATTTTTT TAA AAAAAAATA TTTTTTTTACAAAAA TERM 15 12547 - 12515 - gH 81 -8.1 -4.53475 | opp_overlap 12512 12515 12516, overlap 12501 12512 ATTTGATAAAAATAA TTTTTTTAAAAAAAA ATA TTTTTTTTACAAAAA CAATAATATTTTAAT TERM 16 12579 - 12596 + GH 73 -4.3 -5.35222 | opp_overlap 12592 AATAAAAATAATTCT TTTTATT TAGA AATAAAA TTTTTTGTAAATTTT CRP_014 11394 - 13061 + | hypothetical protein TERM 17 13546 - 13489 - g 73 -9.1 -2.79679 | gap 1, opp_overlap 13478 13477 13519, overlap 13478 13491 13519 AATATGTGTATTACA CAGTTTTTTT-ATAATTTTAACACAATA AAG TATTACATTAATATTATTAAAAAAACTG GTATTAGTAAAAATT TERM 18 13726 - 13705 - g 70 -3.9 -5.63857 | opp_overlap 13697, overlap 13697 AAAAATTTAAAAAAA TACAAAAAT TTGC ATTTTTATA CTTTTAACAATATTA CRP_015 13048 - 13767 + | 5,10-methylenetetrahydrofolate reductase CRP_016 13892 - 13755 - | hypothetical protein TERM 19 13831 - 13801 - G 76 -7.2 -4.40652 | opp_overlap 13808 13818 13821 13822, overlap 13818 13820 13821 13829 AAGTATACAAAATAA TTAATAATAAAAAA AAA TTTTTTATTAATAA AAAAAAAAATTTTTT TERM 20 13835 - 13818 - G 90 -4.3 -6.44931 | opp_overlap 13808 13818 13821 13822, overlap 13801 13820 13821 13829 AATAATAAAAAAAAA TTTTTTA TTAA TAAAAAA AAAAATTTTTTTTAT TERM 21 13821 - 13857 + g 70 -7.7 -3.8709 | opp_overlap 13801 13818 13820 13821 13829 13843, overlap 13808 13818 13822 AATAAAAAAAAATTT TTTATTAATAAAAAAAA AAA TTTTTTTTATTAAAAAG TTTCTAACAAAATTT TERM 22 13822 - 13856 + g 73 -9 -2.91772 | opp_overlap 13801 13818 13821 13820 13829 13843, overlap 13808 13818 13821 ATAAAAAAAAATTTT TTATTAATAAAAAAAA AAA TTTTTTTTATTAAAAA GTTTCTAACAAAATT CRP_017 15115 - 14072 - | succinyl-diaminopimelate desuccinylase TERM 23 14327 - 14309 - G 82 -7.6 -4.93877 | TTTTATTAAATAAAA GTTTTTAT AAC ATAAAAAC GGAATTCCACTTAAA TERM 24 14363 - 14386 + g 75 -2.6 -6.34424 | opp_overlap 14362 14359 14381, overlap 14362 ATTTATATAAACATT TTTTGATTTT AAAA AAAATAAAAA TTTTTTTTTTAAAAC CRP_018 16080 - 15115 - | tetrahydrodipicolinate N-succinyltransferase TERM 25 15272 - 15249 - G 74 -7 -4.4078 | opp_overlap 15244 15249 TTGCTTTAATTAAAA TTTTTTTATT ATTA AATAAAAAAA AAATTTTAGTACCAG TERM 26 15461 - 15438 - G 79 -9.8 -3.20207 | AAGATGACCCACCAA TATCAGTATT ATTA AATACTGATA CTCCTGATGAAACTC CRP_019 16784 - 16074 - | methionine aminopeptidase TERM 27 16195 - 16162 - GH 73 -4.9 -4.94992 | opp_overlap 16164 16166, overlap 16156 TGAAATGTATAAAAA TTTTTTTTTGAAACA AAAA TATTTAAAAAAAAAA ATCCAGAACAATTTC TERM 28 16444 - 16457 + gH 75 -2.5 -5.93252 | opp_overlap 16429 16439 16440, overlap 16440 16446 TTTAAAAATATTTTT TTTAA AAAA TTAAA TTTTTTGTTTTTAAA TERM 29 17175 - 17155 - gH 81 -4.1 -6.04324 | overlap 17138 17157 CTAAAAAAGAAAAAA TATCTTTTT TAA AAAAAGAAA AAAAAATAGAAATTT TERM 30 17173 - 17157 - gH 77 -6.7 -4.6155 | overlap 17138 17155 AAAAAAGAAAAAATA TCTTTTT TAA AAAAAGA AAAAAAAATAGAAAT TERM 31 17409 - 17389 - gH 79 -7.1 -4.64495 | opp_overlap 17389 17388, overlap 17380 ATTCAATAAAAATAA TTTTAAATA TAT TATTTAAAA ATTTATGTTAAATTT CRP_020 16770 - 17420 + | ribosomal protein S2 TERM 32 17574 - 17601 + G 74 -8.8 -3.07895 | opp_overlap 17578, overlap 17578 ATTATTACAGCATTA TAAATTTTATTA ATAA TAATAAAATTTA TGTATTAAAAATAAA TERM 33 17723 - 17700 - g 79 -2.6 -6.47228 | opp_overlap 17703 17722, overlap 17703 17706 17722 TAATTAAAAAAAAAA TAATATTTAA AATT TTAAATATTT TAAGCGTTAAATTGA TERM 34 18022 - 17993 - g 81 -9.7 -3.46236 | opp_overlap 17991 ATTAATAAAATTGAA TATTTTTTTTTTA TAAA TAAAAAAAAAATA AAATTTATATATGAG CRP_021 17414 - 18040 + | hypothetical protein CRP_022 18033 - 18563 + | hypothetical protein TERM 35 19073 - 19091 + G 75 -6.2 -4.94222 | opp_overlap 19073 19077, overlap 19077 CGTTAGAAGAATTAA TAAATAAT AAA ATTATTTA TTTTTCTAAATTATT TERM 36 19707 - 19724 + G 71 -4.9 -5.28983 | opp_overlap 19707 TGAAAGATTAGGAAT TCCAGAT TTAG ATTTGGA TTTTTGTGTTTTAGA CRP_023 18556 - 21897 + | DNA polymerase III alpha subunit CRP_024 21894 - 22382 + | hypothetical protein TERM 37 22438 - 22392 - f 100 -6.4 -6.25741 | opp_overlap 22392 22396, overlap 22383 AAATAAGAAAAAAAA TAAATTTTTATTTTTTTTTT TTTTTTT AAAAAAAAAATGAAAATTCA TTTGTTAGGTTCACC TERM 38 22392 - 22438 + F 73 -6.4 -4.2528 | opp_overlap 22383 22392, overlap 22396 AAATAAGAAAAAAAA TAAATTTTTATTTTTTTTTT TTTTTTT AAAAAAAAAATGAAAATTCA TTTGTTAGGTTCACC TERM 39 22396 - 22434 + F 70 -7.2 -3.70412 | opp_overlap 22383 22392, overlap 22392 AAGAAAAAAAATAAA TTTTTATTTTTTTTTT TTTTTTT AAAAAAAAAATGAAAA TTCATTTGTTAGGTT TERM 40 23073 - 23050 - g 78 -5.5 -5.44721 | overlap 23039 ATTATTGGAAAAAAA TATTTTTGT TTTTTT ACAAAAATA TACAGAAATTAAACT TERM 41 23340 - 23371 + G 72 -3.2 -5.93809 | opp_overlap 23332 23348 TATGATATTTCAGTT GAAAAAAATAATTT AATT AAAAAATTTTTTTC TTTTTTTTATCAAAA TERM 42 23465 - 23431 - g 80 -4.6 -5.81412 | opp_overlap 23418 23432 23435, overlap 23432 23435 TTTATTTAAAAAAAA TTAATTTTTTAGATAT TTT ATATTTAAAAAATTAT TCTATATTTAATGAA TERM 43 23432 - 23464 + G 87 -10.3 -3.78419 | opp_overlap 23431 23432 23435, overlap 23418 23435 TTATTTAAAAAAAAT TAATTTTTTAGATAT TTT ATATTTAAAAAATTA TTCTATATTTAATGA TERM 44 23464 - 23432 - g 76 -8.1 -4.07763 | opp_overlap 23418 23432 23435, overlap 23431 23435 TTATTTAAAAAAAAT TAATTTTTTAGATAT TTT ATATTTAAAAAATTA TTCTATATTTAATGA TERM 45 23435 - 23461 + G 72 -7.6 -4.00323 | opp_overlap 23432 23431 23435, overlap 23418 23432 TTTAAAAAAAATTAA TTTTTTAGATAT TTT ATATTTAAAAAA TTATTCTATATTTAA TERM 46 23635 - 23607 - g 75 -6.3 -4.79657 | opp_overlap 23607 23608, overlap 23622 AGAATATTAAGAAAA TTTTTTAAAAAAA ATG TTTTGTTAAAAAA CGAGTATAAATTAAT CRP_025 22428 - 24530 + | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase TERM 47 24540 - 24511 - f 93 -5.3 -6.3578 | opp_overlap 24522 24531, overlap 24533 ATGTGAAAAAAAAAA TTTTAAATTATTA TTCG TAATATTTTAAAA AAAAATAATTTTAAT TERM 48 24591 - 24576 - f 79 -3.4 -5.90981 | overlap 24580 TTATATTAAAAAAAA TAAATT TTAA AATTTA AAAAAAATAACGTTT TERM 49 24594 - 24580 - f 76 -4.4 -5.36018 | overlap 24576 ATTAAAAAAAATAAA TTTTAA AAT TTAAAA AAAATAACGTTTTAT TERM 50 24668 - 24650 - f 74 -6.2 -4.40561 | overlap 24647 24651 TTTTGTTAAAAATAA TTTTTTTT TTA AAAAAAAA ATGAAAAAAATATAT TERM 51 24759 - 24769 + G 78 -5.4 -5.40072 | ATTAATATTTGTAGT GGAT GTC ATCC TTTTTTTACAAAAAA CRP_026 24669 - 24857 + | ribosomal protein L31 TERM 52 25024 - 25004 - g 72 -2.7 -6.07627 | overlap 25014 ATTTTGAAAAAAAAA TTTTAAAAA ATT TTATTAAAA ACAAAATAATAGTAT TERM 53 25153 - 25140 - g 77 -3.9 -5.98675 | TATAAAAATAAAAAA TATTG AAAA CAATA GACCATTATTAAAAA CRP_027 24835 - 25293 + | hypothetical protein CRP_028 25274 - 26320 + | 3-dehydroquinate synthase TERM 54 27335 - 27308 - gf 73 -4.4 -5.13722 | opp_overlap 27315 TTCATTAAAAGAAAA TTTAAAATTTAT TAAA ATAAATTATAAA AATAAAATACTAAAA CRP_029 26274 - 27923 + | dihydroxy-acid dehydratase TERM 55 28501 - 28471 - g 74 -3.5 -5.79635 | overlap 28473 AAAAAAAAAATAAAA TTTAAAAATTTAG AAAAA CCAAATTTTTACA TTATGATTGTTTTTA TERM 56 28815 - 28829 + G 82 -7.2 -4.82901 | opp_overlap 28828 TTTTGTATCTTGTAG CGTTTT AAA AAAACG TTTTTCTAAAAAAAA TERM 57 28914 - 28930 + G 85 -5.3 -5.83822 | opp_overlap 28914 TTCTATTGTGTATAA TAAAAAT AAT ATTTTTA TTTTTTTTACGTATA CRP_030 27916 - 29010 + | hypothetical protein TERM 58 29490 - 29471 - g 74 -3.6 -5.77571 | opp_overlap 29471 ATTAAAAAAGAAAAA CCAAAAAT TTTA ATTTTAGG ATATTCTTCATATCA CRP_031 29000 - 30196 + | serine hydroxymethyltransferase TERM 59 30986 - 30962 - g 100 -12.3 -6.59152 | opp_overlap 30965 TCAATAAAAAAAAAA CAACAACTACA TTC TGCAGTTGTTG AATTAATAGCAAAAA CRP_032 30317 - 31666 + | putative ABC transporter permease component TERM 60 32007 - 31993 - g 72 -4.4 -5.4756 | AATTTTAACAAAAAA TTTTTT TTC AAAAAA TTAAAATGTTATATT CRP_033 31663 - 32328 + | putative ABC transporter ATP-binding component TERM 61 32888 - 32903 + G 74 -4.8 -5.52986 | opp_overlap 32888 TTTTTCAAAATTTAA TTTTTC TATT GAAAAA TTTTTTTCATACAAT TERM 62 33070 - 33056 - g 75 -2.9 -6.23545 | overlap 33047 TTTAAACAAAAAAAA TGTTT TTTGT AAACA TAAAATTATTTTTTA CRP_034 32319 - 33146 + | hypothetical protein TERM 63 33586 - 33599 + G 85 -2.5 -6.69613 | opp_overlap 33586, overlap 33584 33589 TTTAATTTGTAACTA TTTTA AAAA TAAAA TTTTTTTTTTTATAA TERM 64 33912 - 33894 - g 88 -6.2 -5.75599 | TAAATTATAAAAAAA TTAAAATT AAA AATTTTAA TGAAAAATTTGAAAT CRP_035 33143 - 34297 + | selenocysteine lyase CRP_036 35155 - 34259 - | putative tRNA(5-methylaminomethyl-2- thiouridylate) methyltransferase TERM 65 34528 - 34541 + g 72 -2.5 -6.0427 | opp_overlap 34528, overlap 34534 TTTGATTATATTTAA TTTTA ACAA TAAAA TTTTTTTTGTATAAT CRP_037 35379 - 35155 - | translation initiation factor IF-1 CRP_038 35914 - 35618 - | putative thioredoxin CRP_039 37212 - 35911 - | 6-phosphogluconate dehydrogenase TERM 66 36799 - 36769 - G 84 -4.2 -6.21477 | overlap 36771 AATATTAAAAAAAAA TAGTAATCTTTTTA TCG TTAAAAAATTACCA TCTATCATTAAACAT TERM 67 37355 - 37335 - R 87 -2.7 -6.60575 | overlap 37321 37338 ATTTAAAAAAAAAAA TTATTTTTT AAA AAAAAATTA CAGTTAAAATAATAT TERM 68 37486 - 37511 + r 87 -2 -6.60575 | opp_overlap 37508 37510, overlap 37488 TATATCATTGTAATT TTTATTGTTA AATTGA TAACAATATA TTTTTTTTTTTAAAT TERM 69 37488 - 37509 + r 70 -4.6 -4.93756 | opp_overlap 37508, overlap 37486 TATCATTGTAATTTT TATTGTTA AATTGA TAACAATA TATTTTTTTTTTTAA TERM 70 37553 - 37543 - R 87 -2.6 -6.63964 | opp_overlap 37543, overlap 37510 37508 37550 CATGAAAAAAAAAAA TAAA AGA TTTA ATATTTAAAAATCCT CRP_040 38177 - 37719 - | hypothetical protein TERM 71 38182 - 38196 + H 73 -4.4 -5.2291 | overlap 38190 TTAAATTTCATACTT TTTTTT TTT AAAAAA TTTTTATTATAATGT CRP_041 38340 - 39029 + | putative peptide chain release factor A CRP_042 40130 - 39033 - | aspartyl/glutamyl-tRNA amidotransferase B subunit TERM 72 39137 - 39168 + g 72 -2.7 -6.06723 | gap 1, opp_overlap 39137 39164, overlap 39164 AAAAAAAAATAATAC TAAAATTAT-AATA AAAAA TATTCATAATTTTA TTTTTTTTTGAAAAA TERM 73 39211 - 39229 + g 88 -6.2 -5.75342 | opp_overlap 39213 39215 39228, overlap 39228 AAATTTTTTGTATTA TATATTTT ATT AAAATATA TTTTTTTTAAAAAAA TERM 74 39228 - 39248 + g 95 -4.9 -6.41805 | opp_overlap 39228 39230 39231, overlap 39211 TATTTTATTAAAATA TATTTTTTT TAA AAAAAAGTA TTTTTTTTTTGGTAA TERM 75 39634 - 39649 + g 72 -3.4 -5.96219 | opp_overlap 39623, overlap 39623 GAAATAAAATAGTTT TTAATA ATTT TATTAA TTTTTTTTATAAATA TERM 76 39985 - 39968 - G 78 -2.1 -6.55664 | overlap 39971 39978 TAAAACAAAAAAAAA CAATTAA ATAT TTAATTA AATAATTAAAATAAG CRP_043 41478 - 40117 - | aspartyl/glutamyl-tRNA amidotransferase A subunit TERM 77 40510 - 40525 + g 75 -3.4 -6.02914 | TTTTGTAAAATCATT TATATT TTTA AATATA TTTTTTTTATATCCA CRP_044 41675 - 41475 - | hypothetical protein TERM 78 41565 - 41541 - G 76 -8.9 -3.21726 | opp_overlap 41522 41521 41541 41559 TTTTATAATATTTAA TTTTAAAAAAA AGC TTTTTTTAAAA TTTTTAAATTTAATT TERM 79 41541 - 41565 + g 100 -8.9 -4.83759 | opp_overlap 41541, overlap 41522 41521 41559 TTTTATAATATTTAA TTTTAAAAAAA AGC TTTTTTTAAAA TTTTTAAATTTAATT TERM 80 41838 - 41866 + G 88 -6.3 -5.65513 | opp_overlap 41834 41838 41861, overlap 41823 41861 TAAAATAATAATTTA TTTTAATTTTTTT AAA AAAAAAATAAAAA TTTTTTTAATTAATA TERM 81 41874 - 41861 - g 75 -2.5 -6.34424 | opp_overlap 41838 41861, overlap 41834 41838 TTTTTAAAAAAAAAA TAAAA ATTT TTTTA ATTAATATAAAAAGT CRP_045 41767 - 42060 + | ribosomal protein L13 CRP_046 42057 - 42437 + | ribosomal protein S9 TERM 82 42903 - 42891 - g 86 -3.5 -6.4753 | TTAAATAAAAAAAAA TATTT GGA AAATA AAGTAAAATTAAATG TERM 83 42922 - 42936 + G 77 -4.4 -5.81032 | opp_overlap 42912 42907, overlap 42912 42919 TAAAATTAAATGTTT TAAATT TAA AATTTA TTTTTTTTAAAATTA CRP_047 42558 - 43139 + | hypothetical protein TERM 84 43315 - 43301 - g 80 -4.4 -6.02345 | opp_overlap 43301, overlap 43292 TAAGTATAAAAAAAA TTTTAA ATA TTAAAA AATATTTTTTTCCAA TERM 85 43372 - 43388 + G 100 -6.7 -6.47228 | opp_overlap 43371 43372 AACGATTCTATTAAT TTGTTAT TTA ATAACAA TTTTTTTTTTAATTG TERM 86 43703 - 43718 + G 95 -3.4 -6.91736 | AAGTATTAATTTCAT TTTTTA TTAA TAAAAA TTTTTTTTTTTTATT CRP_048 43129 - 43887 + | hypothetical protein TERM 87 44309 - 44289 - g 71 -8.5 -3.09516 | opp_overlap 44288 GGTTTTATTATTCAA TGTAAAAAA AAT TTTTTTACA CCTTTAATTATTATA TERM 88 44576 - 44609 + G 77 -4.9 -5.59502 | opp_overlap 44559, overlap 44559 44578 AAATAAAAAATTTAT TTTAATTTTAAATTT TAAT AAATTTAGAATTGGA TTTTTTGATTTTTTA TERM 89 44629 - 44641 + G 95 -3.5 -6.67286 | opp_overlap 44636, overlap 44627 TTGATTTTTTAGTTA TTAAT AAT ATTAA TTTTTTTTTTATTTA TERM 90 44673 - 44636 - g 80 -8.9 -3.73647 | opp_overlap 44627 44629 44642 44645, overlap 44668 TTTAGTTATTAATAA TATTAATTTTTTTTTTA TTTA TAAAAAAATAATTAATA ATGAACACATTGTTA TERM 91 44922 - 44947 + G 74 -4.9 -5.41746 | opp_overlap 44915 44922 44920 AAAAATTATTTAATA TTTAAATGTAA AAAA TTTCATTTAAA TTTTTTTAAAACATT CRP_049 43884 - 45107 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 92 45099 - 45087 - f 71 -3.5 -5.42458 | AATAAAAAAAATAAA TTTTA TGT TAAAA CTAAATAGTACTATA TERM 93 45279 - 45246 - g 74 -8.6 -3.55323 | opp_overlap 45221 AAAAATTGTATATAA TATTTTTTTTTTTA GTAATT TAAAAAAAAAAATA AAAACAGGATATTAT TERM 94 45363 - 45353 - g 85 -2.6 -6.63964 | GATTAAAAAAAAAAA TTTT ACA AAAA AAAATTTATTTGTTC TERM 95 45981 - 45967 - g 80 -4.4 -5.98675 | overlap 45960 TACAAAAATAAAAAA TTTATT AGC AATAAA AATAATAGAATTACT TERM 96 46066 - 46050 - g 71 -6.7 -4.22276 | opp_overlap 46050, overlap 46047 46040 46053 AAAAATTATAAATAA TGATTTT TAT AAAATCA TTTATATAAATAAAA CRP_050 45091 - 46197 + | putative ribosomal protein S1 CRP_051 47786 - 46194 - | chaperonin GroEL CRP_052 48069 - 47776 - | chaperonin GroES TERM 97 48549 - 48571 + H 70 -5.1 -4.91852 | opp_overlap 48542 48548 48549 TATAAAAATTTAAAT TTTAAAAAA AAAAA TTTTTTAAA TTTGTTTTTAGTCAA CRP_053 48573 - 48971 + | hypothetical protein CRP_054 48961 - 49422 + | hypothetical protein TERM 98 50208 - 50195 - gf 75 -2.5 -5.93809 | opp_overlap 50199, overlap 50199 TTTTTATAAAAAAAA TAATT TAAT AATTA ATATCATTTGTATTG CRP_055 49416 - 50561 + | putative replicative DNA helicase TERM 99 50841 - 50809 - gf 84 -5.9 -5.14563 | opp_overlap 50812 50835 TTTTTTATTAAAAAA CAATTTAAAATTAAA AAT TTTTATTTTAAATTA ATAATTTATTTTTTT TERM 100 50835 - 50849 + GF 100 -4.4 -6.59152 | opp_overlap 50809, overlap 50812 TAAAAATTTTTATTT TAAATT AAT AATTTA TTTTTTTTTTATTAC CRP_056 50533 - 51102 + | hypothetical protein TERM 101 51194 - 51184 - g 74 -4 -5.77734 | AAATAAAAAGAAAAA TGTT AAA AACA AAATATTAAAAAAAA CRP_057 51080 - 51217 + | hypothetical protein TERM 102 51633 - 51609 - g 77 -8.9 -3.46906 | opp_overlap 51613, overlap 51624 ACCAAAATACATTAA TTTATTAAAAT TTA ATTTTAATAAA AATGAATTAATTTAT CRP_058 51214 - 51987 + | putative DNA primase TERM 103 51982 - 51964 - f 71 -6.2 -4.30995 | opp_overlap 51964, overlap 51975 TTTGGTATAAAAGAA TTTTTAAA TTA TTTAAAAA TATGATTTTAAAAAT TERM 104 52045 - 52016 - g 77 -4.7 -5.63236 | gap 1, opp_overlap 52016 52010 52025 52025, overlap 52019 52025 ACTTAAAAATAAAAA TTAT-AAAAATATT AAA AATATTTTTAATAA ATTTTGTTTTAAAAA TERM 105 52041 - 52019 - g 71 -8 -3.53667 | opp_overlap 52016 52010 52025 52025, overlap 52016 52025 TAAAAATAAAAATTA TAAAAATATT AAA AATATTTTTA ATAAATTTTGTTTTA TERM 106 52044 - 52025 - g 72 -5.2 -5.1286 | opp_overlap 52025 52025 52016 52010, overlap 52019 52016 TAAAAATTATAAAAA TATTAAAA ATAT TTTTAATA AATTTTGTTTTAAAA TERM 107 52086 - 52074 - g 100 -3.5 -7.14698 | AAAAAAAAAAAAAAA TTTTT TTT AAAAA TAATAAATACAAAAA TERM 108 52115 - 52103 - g 70 -3.5 -5.61913 | overlap 52112 AATAAATACAAAAAA TTTAT TCA ATAAA ATAACTATTTTAAGA TERM 109 52306 - 52292 - g 90 -4.4 -6.44931 | opp_overlap 52292 52279 52274 52273 52296 AATAATAAAAAAAAA TTTTTT AAA AAAAAA AATTTTTTTCAATTG CRP_059 51984 - 52946 + | putative RNA polymerase sigma factor rpoD TERM 110 53000 - 52984 - T 74 -8.1 -3.67 | overlap 52982 TTAATTGGTAAAATA TTTGGTT TGC AACCAAA AAAAAAGAGTTCAAT TERM 111 53027 - 53007 - T 79 -2.6 -6.23209 | opp_overlap 53007 GCAACCAAAAAAAAA GAGTTCAA TTCTC TTTAACTC CATTTTTTTTATTTT CRP_060 53892 - 53542 - | hypothetical protein TERM 112 53704 - 53714 + g 100 -2.6 -7.00209 | overlap 53696 TTCCCTTTTATTGAG TAAT AAT ATTA TTTTTTTTTTTTTAT TERM 113 53778 - 53788 + g 75 -2.6 -6.2845 | TTATATAATCATTGA TATT TAA AATA TTTTTTTTTATAATT CRP_061 53898 - 54353 + | chaperone protein GrpE TERM 114 54975 - 54965 - g 95 -4 -6.72663 | opp_overlap 54965 AGATAAAAAAAAAAA TGAT AGA ATCA TTGCTGTTTATGATT CRP_062 54408 - 56216 + | chaperone protein DnaK TERM 115 56259 - 56214 - f 91 -4.2 -6.50115 | opp_overlap 56220 56221 56254, overlap 56217 56221 ATTATAAAAAAAAAA TAACAAAGCATTACTCTTTA TTTTAT TAAAGAGTAGTGCCTTTTTT TTAAAAAAAAAAAAT TERM 116 56256 - 56217 - f 84 -5.9 -5.23806 | opp_overlap 56220 56221 56254, overlap 56214 56221 ATAAAAAAAAAATAA CAAAGCATTACTCTTTA TTTTAT TAAAGAGTAGTGCCTTT TTTTTAAAAAAAAAA TERM 117 56220 - 56253 + F 100 -7.6 -5.75342 | opp_overlap 56217 56214 56221, overlap 56221 AAAAAAAAATAACAA AGCATTACTCTTTA TTTTAT TAAAGAGTAGTGCC TTTTTTTTAAAAAAA TERM 118 56252 - 56221 - f 91 -8.9 -4.92655 | opp_overlap 56220 56221, overlap 56217 56214 AAAAAAAATAACAAA GCATTACTCTTTA TTTTAT TAAAGAGTAGTGC CTTTTTTTTAAAAAA TERM 119 56221 - 56252 + F 93 -11.1 -4.04482 | opp_overlap 56221 56217 56214, overlap 56220 AAAAAAAATAACAAA GCATTACTCTTTA TTTTAT TAAAGAGTAGTGC CTTTTTTTTAAAAAA TERM 120 56326 - 56314 - g 95 -3.5 -6.67014 | overlap 56301 AATTAAAAAAAAAAA TTTTA TTT TAAAA GTTAGAAAAATATGT CRP_063 56273 - 56587 + | hypothetical protein TERM 121 56706 - 56690 - g 89 -5.3 -6.13503 | TATTAATAAAAAAAA TTATAAA AAA TTTATAA ATAATAAATATAACT CRP_064 56580 - 57278 + | dihydrodipicolinate reductase CRP_065 57272 - 57721 + | truncated carbamoylphosphate synthase small subunit CRP_066 57714 - 58253 + | truncated carbamoylphosphate synthase small subunitt TERM 122 60622 - 60606 - g 79 -9.5 -3.19668 | opp_overlap 60605 60603 60606 60611 TATTATTGAATGTAA TCCTAGA GCG TCTAGGA CTGTTCCTTTTATTT TERM 123 60606 - 60622 + G 75 -9.5 -2.69031 | opp_overlap 60606, overlap 60605 60603 60611 TATTATTGAATGTAA TCCTAGA GCG TCTAGGA CTGTTCCTTTTATTT CRP_067 58246 - 61143 + | carbamoylphosphate synthase large subunit TERM 124 61611 - 61631 + GF 82 -7.1 -4.82091 | opp_overlap 61609 TTTCTGTATTTAATT TTTTTTTTT TTG AAAAAAAAA TTTATTTATTTGATT CRP_068 61235 - 62845 + | putative translation initiation factor IF-2 TERM 125 62922 - 62905 - gf 81 -4.3 -5.9663 | overlap 62915 AAAGATTAAAAAAAA TTAAAAA TCAT TTTTTAA TAAATAAAAAAGATT CRP_069 62817 - 63014 + | hypothetical protein TERM 126 63627 - 63607 - gf 89 -6.3 -5.37593 | opp_overlap 63611 63625 TTCGAAATCAAAAAA TAAACATTT ATT AAATGCTTA TAAACAAATTTATAA TERM 127 63639 - 63662 + GF 75 -2.6 -6.07969 | opp_overlap 63640 63643 63650 63651, overlap 63625 63640 CTTATAAACAAATTT ATAATTTTAA ACTT TTAAAATTAG TTTTTTTTAATTTTA TERM 128 63640 - 63661 + GF 71 -6.1 -4.21121 | opp_overlap 63640 63643 63650 63651, overlap 63625 63639 TTATAAACAAATTTA TAATTTTAA ACTT TTAAAATTA GTTTTTTTTAATTTT TERM 129 63743 - 63771 + GF 81 -6.3 -5.08824 | opp_overlap 63747 63770, overlap 63747 63749 63768 TTACTTAAAAAATGC AAAATTTTTTTTT TTA AAAAAAAAATTTA TTTTTTAAATAGAAA TERM 130 63767 - 63747 - gf 79 -7.1 -4.5366 | opp_overlap 63743 63747 63749 TTAAAAAATGCAAAA TTTTTTTTT TTA AAAAAAAAA TTTATTTTTTAAATA TERM 131 63747 - 63767 + GF 84 -7.1 -5.0666 | opp_overlap 63747, overlap 63743 63749 TTAAAAAATGCAAAA TTTTTTTTT TTA AAAAAAAAA TTTATTTTTTAAATA TERM 132 63816 - 63848 + GF 77 -8.1 -3.96624 | opp_overlap 63816 63815 63813 63835, overlap 63821 ATTTCAAGAAAATAT TTAATTTAAAAAAAT TTA ATTTTTATAAATTAA TTTATAATAAAAATA CRP_070 63011 - 63988 + | tyrosyl-tRNA synthetase TERM 133 64192 - 64212 + GF 70 -7.1 -3.69405 | opp_overlap 64184 64192 AATGGAATGGAAAAA TTTTATTTT TTC AAAATAAAA TTAATATTTTTTATA TERM 134 64212 - 64192 - gf 82 -7.1 -4.75776 | opp_overlap 64192, overlap 64184 AATGGAATGGAAAAA TTTTATTTT TTC AAAATAAAA TTAATATTTTTTATA TERM 135 64322 - 64350 + GF 70 -7.7 -3.49687 | opp_overlap 64322, overlap 64321 TATTAAAAAATTAAA TGTTTTTGAATGT TTT ATATTTAAAAACA ATTTTTATGAAAAAT TERM 136 64868 - 64885 + GF 75 -4.3 -5.63374 | TAGTTTATTTAATTT TAAAAAT ATTA ATTTTTA TTTTTTTAATATTAG CRP_071 63948 - 65123 + | glutaminyl-tRNA synthetase TERM 137 65107 - 65123 + F 71 -2.3 -5.88061 | opp_overlap 65107 TTAAAAAACAACTAA TTAGTAA TGT TAACTAA TTTTTTTCGTTTTTT TERM 138 65392 - 65415 + F 76 -4.8 -5.41143 | TTGTTTACCTTTTTA TTATTTTAAA AATA TTTAAAATGA TTTTTTTACCAACTG TERM 139 65536 - 65558 + GF 81 -6.4 -4.78149 | opp_overlap 65542, overlap 65539 AAGATACGATGGCAT CACTAATTGT ATC ACAATTAATG TTTTTAGATTCTGAA TERM 140 65693 - 65711 + GF 77 -8.8 -3.40307 | opp_overlap 65697, overlap 65692 65694 AATTTGTATTGGTCA AGCAGCCA GTA TGGCTGCA GTTTTGTTAGCTGCA TERM 141 65694 - 65710 + GF 90 -12.3 -2.63702 | opp_overlap 65697, overlap 65693 65692 ATTTGTATTGGTCAA GCAGCCA GTA TGGCTGC AGTTTTGTTAGCTGC CRP_072 65412 - 65996 + | ATP-dependent Clp protease proteolytic subunit clpX 65971 - 67038 + | ATP-dependent protease ATP-binding subunit TERM 142 67164 - 67131 - f 87 -3.6 -6.36459 | gap 1, opp_overlap 67136, overlap 67133 67136 TTCAATAAAAAAAAA TACAATAAAAAAAAA TAGTT TTTTTTTTTATT-TA AATAATTATTTTTTT TERM 143 67160 - 67136 - f 74 -6 -4.40373 | opp_overlap 67136, overlap 67133 67131 TAAAAAAAAATACAA TAAAAAAAAA TAGTT TTTTTTTTTA TTTAAATAATTATTT CRP_074 67801 - 68127 + | hypothetical protein TERM 144 68365 - 68353 - g 81 -3.5 -6.3578 | opp_overlap 68353 ATTTTAAAAAAAAAA TTAAT AAA ATTAA TTTAAAATTTTTAAA TERM 145 69237 - 69217 - g 71 -4.9 -5.26907 | overlap 69212 TAATACAAAATAAAA TTTTTTTAA ATT CTAAAAAAA AATCAAAATTTATAA TERM 146 69271 - 69288 + G 74 -8.5 -3.54489 | opp_overlap 69267 69265, overlap 69267 TTTATAAAAGAGCTT TACCACA TCAT TGTGGTA TTGCTTTCGGATTAG CRP_075 68124 - 69401 + | aspartyl-tRNA synthetase CRP_076 69553 - 70074 + | ribulose-phosphate 3-epimerase CRP_077 73120 - 70076 - | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 147 70845 - 70863 + g 72 -9 -2.60392 | overlap 70844 CGCATTATTAAATTT TTGCTAAT AGT ATTAGCAA CTTCATTAGAACCTG TERM 148 71309 - 71346 + g 72 -5.9 -4.78984 | opp_overlap 71316 71319, overlap 71316 71327 TAATAATATTAATTC TATAAAATTATGTTTTA TTAA TAAAACAAAATTTTTTA TTATTTTATTTTTTT TERM 149 71316 - 71339 + g 74 -4 -5.77677 | opp_overlap 71316 71319, overlap 71309 71327 ATTAATTCTATAAAA TTATGTTTTA TTAA TAAAACAAAA TTTTTTATTATTTTA TERM 150 71327 - 71349 + g 70 -3.6 -5.66926 | opp_overlap 71319 71316, overlap 71316 71309 AAAATTATGTTTTAT TAATAAAACA AAA TTTTTTATTA TTTTATTTTTTTTAA TERM 151 73529 - 73539 + G 75 -2.6 -6.30182 | opp_overlap 73529 AATGAAATAAAAAAT TTTA CAA TAAA TTTTTTTTTATATAC TERM 152 74005 - 73977 - g 75 -6.3 -4.91084 | TATTTAATAATAAAA TTTTTTATTTTTT AAA AAAAAATAACAAA AGTAGAATTCCATGG TERM 153 74142 - 74175 + G 71 -8.5 -3.12327 | opp_overlap 74140 74139 74153, overlap 74140 74146 TAAATCCAAAAATTT TTAATTTTAAACATA AAAA TATGATTAAAATTAA TATTCAATCTGGAAA TERM 154 74472 - 74448 - g 83 -2.3 -6.71862 | overlap 74449 74457 74458 AAAATAAAAAAAAAA CTATAAAAATT ATA AATTATTATAA TGAATAATTCATACG CRP_078 73136 - 74479 + | 2-isopropylmalate synthase TERM 155 74709 - 74698 - g 70 -5.8 -4.70511 | opp_overlap 74698 74696 TTAAAAATAAAACAA CAGG CGCA CCTG TATTAATGTTAATAA CRP_079 74472 - 75509 + | chorismate synthase TERM 156 75779 - 75742 - g 71 -6.7 -4.35581 | opp_overlap 75742 75745 75757, overlap 75744 75756 75757 TTAAAACAGTTAAAA TGCTTAAAAAAAAATTT TAAA AAATTTTTTTTTAAATA TTATGATATTAATAG TERM 157 75777 - 75744 - g 72 -9.3 -2.51074 | opp_overlap 75742 75745 75757, overlap 75742 75756 75757 AAAACAGTTAAAATG CTTAAAAAAAAATTT TAAA AAATTTTTTTTTAAA TATTATGATATTAAT TERM 158 75745 - 75776 + G 82 -10.6 -2.59527 | opp_overlap 75744 75742 75756 75757, overlap 75742 75757 AAACAGTTAAAATGC TTAAAAAAAAATTT TAAA AAATTTTTTTTTAA ATATTATGATATTAA TERM 159 75778 - 75756 - g 77 -3.6 -6.07627 | opp_overlap 75745 75742 75757, overlap 75744 75742 75757 ATGCTTAAAAAAAAA TTTTAAAAAA TTT TTTTTTAAAT ATTATGATATTAATA TERM 160 75777 - 75757 - g 71 -7.1 -4.22949 | opp_overlap 75745 75742 75757, overlap 75744 75756 75742 TGCTTAAAAAAAAAT TTTAAAAAA TTT TTTTTTAAA TATTATGATATTAAT TERM 161 76475 - 76457 - g 77 -4.6 -5.58522 | opp_overlap 76456, overlap 76458 TATATAAAATAAAAA TCGATAAA GTT TTTATCGG ATCATGTACAAATTC TERM 162 76474 - 76458 - g 74 -8.1 -3.92673 | opp_overlap 76456, overlap 76457 ATATAAAATAAAAAT CGATAAA GTT TTTATCG GATCATGTACAAATT CRP_080 75502 - 76872 + | 3-isopropylmalate dehydratase large subunit TERM 163 76938 - 76965 + G 72 -5.8 -4.84219 | opp_overlap 76938 AACAATTTTTGAAAA CAATAAAAAAAA CAGG TTTTTATTATTG TTTATTTTATGATTT CRP_081 76856 - 77422 + | 3-isopropylmalate dehydratase small subunit TERM 164 78432 - 78446 + G 84 -5.8 -5.67063 | opp_overlap 78445, overlap 78445 TACCGAAGAATTTGG TGATTT AGT AAATCA TTTTTTTATAATAAA CRP_082 77419 - 78468 + | 3-isopropylmalate dehydrogenase CRP_083 78461 - 79486 + | aspartate-semialdehyde dehydrogenase TERM 165 79549 - 79539 - g 74 -4 -5.95946 | opp_overlap 79539 79531 TCAATAATAAAAAAA GAAA ATT TTTC AATTTTTAATTTTAA TERM 166 79589 - 79574 - g 75 -3.4 -6.09888 | opp_overlap 79580 79581 79585, overlap 79580 79581 TTTTAATAAAAAAAA TAAAAA TTTT TTTTTA AAAAAAAAATTAAAT TERM 167 79598 - 79580 - g 90 -6.2 -5.94743 | opp_overlap 79580 79581 79585, overlap 79574 79581 TAAAAAAAATAAAAA TTTTTTTT TAA AAAAAAAA TTAAATTTTTTTTTT TERM 168 79621 - 79581 - g 72 -7.3 -4.11355 | opp_overlap 79580 79581 79585, overlap 79574 79580 AAAAAAAATAAAAAT TTTTTTTTAAAAAAAAAAT TAA ATTTTTTTTTTAAAATTAA TTTTACTAATTATAA TERM 169 79581 - 79621 + G 74 -7.3 -4.37527 | opp_overlap 79574 79580 79581, overlap 79580 79585 AAAAAAAATAAAAAT TTTTTTTTAAAAAAAAAAT TAA ATTTTTTTTTTAAAATTAA TTTTACTAATTATAA TERM 170 79585 - 79617 + G 100 -12.5 -3.73345 | opp_overlap 79574 79580 79581, overlap 79580 79581 AAAATAAAAATTTTT TTTTAAAAAAAAAAT TAA ATTTTTTTTTTAAAA TTAATTTTACTAATT TERM 171 79713 - 79700 - g 75 -2.5 -6.22691 | overlap 79701 TAATAAGAAAAAAAA TTTTT TTTT AAAAA TCCCAAATTTGCAAA TERM 172 80125 - 80108 - g 81 -5.7 -5.42198 | opp_overlap 80107 TTTTAAAAAACAAAA TCAATTT AAAA AAATTGA AATTTATCAATTTAT CRP_084 79497 - 80507 + | seryl-tRNA synthetase TERM 173 80529 - 80513 - f 70 -8.1 -2.9856 | opp_overlap 80516, overlap 80512 GAAATGGTAAACAAT CAAGATT TAG AATCTTG TGCTAACGCTTAGGA TERM 174 80564 - 80593 + F 77 -9.7 -3.02947 | overlap 80566 80568 AAATCTCCTGTTCGG TATATTTTTTTTT ATAA AAAAAAAAATATA TATATATGATAAGTA TERM 175 80566 - 80591 + F 70 -7.9 -3.0682 | overlap 80564 80568 ATCTCCTGTTCGGTA TATTTTTTTTT ATAA AAAAAAAAATA TATATATATGATAAG CRP_085 80599 - 80970 + | hypothetical protein TERM 176 80992 - 81025 + T 86 -6.5 -5.13344 | gap 1, opp_overlap 80992 TAATGTTTAAATTTA TTTATTAACTTTTAAA AAT TTTAAAA-TTAATAAA TTTTTATATTAATAT CRP_086 81565 - 81029 - | hypothetical protein CRP_087 82107 - 81562 - | DNA polymerase III epsilon subunit CRP_088 83321 - 82104 - | hypothetical protein TERM 177 82300 - 82283 - G 84 -5.7 -5.63857 | AAAAATTTAAAAAAA CAATTTT GATT AAAATTG AAAATCTAATTTTTT TERM 178 82667 - 82654 - G 72 -2.5 -6.06723 | opp_overlap 82654 82637, overlap 82638 TTTTTTAAAAAAAAA TTTTT AATT AAAAA GTTGTTTTTTAAAAA TERM 179 82785 - 82798 + g 75 -2.5 -6.34424 | opp_overlap 82782, overlap 82762 AAGAACAAAAAATTT TAAAA AAAA TTTTA TTTTTTTTTTACAAA TERM 180 82930 - 82942 + g 77 -3.5 -6.06723 | overlap 82929 82931 82933 CTTTTTATTATTGAT TTTTT ATA AAAAA TTTTTTTTTGGAAAA TERM 181 83046 - 83071 + g 100 -3.5 -7.14698 | CTGTTTTCTTTTAAG TTTTATAAAAA TATT TTTATATAAAA TTTTTTTTTTTTTTT CRP_089 83577 - 83314 - | putative phenylalanyl-tRNA synthetase alpha subunit TERM 182 83530 - 83540 + g 85 -2.6 -6.58542 | overlap 83526 83526 TCTTGTTTTTCTTAT TTTA TAA TAAA TTTTTTTTTTTAAAA TERM 183 83732 - 83762 + r 76 -4.9 -5.27023 | TTTTTAAAATATCTA TTTTGAGAACATG AAGTA TGTGTTCTTAAAA TTTTATTTTTAAGAT CRP_090 84284 - 83979 - | ribosomal protein L20 CRP_091 84926 - 84402 - | translation initiation factor IF-3 TERM 184 84776 - 84805 + g 74 -7.5 -4.33519 | opp_overlap 84776 84775 84795, overlap 84776 84776 ATATGTAAATAAAAG TTTTTTTTTTTTT GCTA AAGAAAAAAAAAA GTTTTTTTTTAATTT TERM 185 84776 - 84806 + g 84 -4.3 -6.31682 | opp_overlap 84776 84775 84795, overlap 84776 84776 ATATGTAAATAAAAG TTTTTTTTTTTTT GCTAA AGAAAAAAAAAAG TTTTTTTTTAATTTT TERM 186 84776 - 84804 + g 71 -8.5 -3.16451 | opp_overlap 84775 84776 84795, overlap 84776 84776 ATATGTAAATAAAAG TTTTTTTTTTTTT GCT AAAGAAAAAAAAA AGTTTTTTTTTAATT CRP_092 85534 - 84926 - | superoxide dismutase CRP_093 86044 - 85571 - | hypothetical protein CRP_094 86949 - 86041 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 187 86786 - 86798 + g 74 -3.5 -5.87688 | opp_overlap 86786 ATTATTACAACATAA TTTTT TGT AAAAA TTTTTTTTAACTTAT CRP_095 87068 - 86937 - | hypothetical protein TERM 188 87308 - 87295 - gH 75 -2.5 -5.9667 | overlap 87298 AAAAATATAAAAAAA TAATA ATAA TATTA ACTGGATGTTTAACA TERM 189 87456 - 87439 - gH 87 -2.1 -6.50278 | AAACTAAAAAAAAAA TTCTTTT GATT AAAAAAA AAAATAATTTTAATA TERM 190 87948 - 87967 + GH 71 -2.2 -5.79588 | overlap 87949 TCTACTGATATTATT GTTTCATT TCCA AATGAAAA TTTTTTTGATTTTGA TERM 191 88019 - 88009 - gH 72 -2.6 -5.77853 | opp_overlap 87989 AAGTTTTAAAAAAAA TAAA ATT TTTA GATATATATTATTTT TERM 192 88057 - 88084 + GH 76 -3.6 -5.7946 | opp_overlap 88051 88057 88060, overlap 88060 CAAAACTTAGAAACA CTATTTCTTTTA ATTT TAAAGAAAATAG TTTTTTTGTTAAAAA CRP_096 87069 - 88349 + | hypothetical protein TERM 193 88549 - 88559 + GF 73 -4 -5.40072 | AAATTATTATTACAT TGTT TTA AACA TTTTTTTGAAAAACA CRP_097 88324 - 88617 + | hypothetical protein TERM 194 89152 - 89136 - g 74 -6.7 -4.57275 | TAAAAAAAGTTAAAA TAAAAAC TTG GTTTTTA AAAATTAAAAAATAT TERM 195 89281 - 89247 - g 86 -9 -4.32651 | opp_overlap 89249, overlap 89249 AACAATGGATTAAAA TATTTTTTTTTTTTTT TTT AAAAAAAAAAAAAATT TATTTAAATATAAAT TERM 196 89249 - 89279 + G 100 -11.6 -4.48299 | opp_overlap 89247 89249 CAATGGATTAAAATA TTTTTTTTTTTTTT TTT AAAAAAAAAAAAAA TTTATTTAAATATAA TERM 197 89279 - 89249 - g 93 -11.6 -3.75571 | opp_overlap 89249, overlap 89247 CAATGGATTAAAATA TTTTTTTTTTTTTT TTT AAAAAAAAAAAAAA TTTATTTAAATATAA TERM 198 89628 - 89608 - g 72 -2.7 -6.12458 | overlap 89611 TAAAAAAATAAAAAA TAATAATTT TAA AAATTATAA AACAGTGGATACTTT TERM 199 89980 - 89968 - g 79 -3.4 -6.31682 | AAAATCAAAAAAAAA TGGA ATCAA TCCA ATAAAAATTATAAAA TERM 200 90233 - 90216 - g 74 -2.1 -6.17268 | CTACAATAAAAAAAA TATTATT AAAA AACAATA GTATTATTCAACTTA CRP_098 88604 - 90502 + | leucyl-tRNA synthetase CRP_099 91316 - 90492 - | succinyl-CoA synthetase alpha subunit CRP_100 92350 - 91313 - | succinyl-CoA synthetase beta subunit TERM 201 92083 - 92097 + g 78 -5.8 -5.31275 | ATAAGAAAAATTCTA TTTCAA TTT TTGAAA TTTTTTCTAATAAAA TERM 202 92187 - 92206 + g 95 -5 -6.53504 | opp_overlap 92190, overlap 92174 92188 AATTCATTTTTTGAA TGAGGTAT TAAT ATACCTCC TTTTTTTTTTCTATA TERM 203 92188 - 92205 + g 84 -8.5 -4.48442 | opp_overlap 92190, overlap 92174 92187 ATTCATTTTTTGAAT GAGGTAT TAAT ATACCTC CTTTTTTTTTTCTAT CRP_101 93345 - 92347 - | putative glutamyl-tRNA synthetase TERM 204 92663 - 92681 + g 88 -6.2 -5.68039 | overlap 92669 GTATTATTTATATTT TTTTTTTT TAT AAAAAAAA TTTTTTTATAAATTT TERM 205 92669 - 92693 + g 91 -8.9 -4.6971 | opp_overlap 92684, overlap 92663 92684 92688 92690 TTTATATTTTTTTTT TTTATAAAAAA AAT TTTTTTATAAA TTTTATTAAAATTTA TERM 206 93074 - 93062 - G 70 -3.5 -5.63374 | opp_overlap 93051 93062, overlap 93053 93051 TTAATATTAAAAAAA TTTTT TTT AAAAA TTATTTTTTTTTTAA TERM 207 93076 - 93094 + g 75 -3.3 -5.9873 | opp_overlap 93076, overlap 93080 ATTTTTTTTAAAAAT TATTTTT TTTTT AAAAATA TTTTTTTTATAATAA TERM 208 93660 - 93679 + G 71 -8 -3.55815 | GATTAGATTGTCATG GTTTGATT AAAA AATCAAAC TTTAAAAAAATATTT TERM 209 93734 - 93690 - g 74 -4.9 -5.49809 | gap 1, opp_overlap 93690 93690 93692 93707, overlap 93708 CAAACTTTAAAAAAA TATTTAAATTAAATATAATT AAAATA AATTAT-TTTAACTTAAATA TCGATTTTAATAAAA TERM 210 94179 - 94166 - g 72 -2.5 -6.15828 | opp_overlap 94166, overlap 94155 94151 TTTATTAAAAAAAAA TTTTT AAAC AAAAA ATTAATACAGATTAT TERM 211 94706 - 94722 + G 78 -2.4 -6.37666 | opp_overlap 94706 TTTTATATGAAAAAA TTAATT TCAAT AATTAA TTTTTTTTATTTTAT CRP_102 93518 - 94816 + | methionyl-tRNA synthetase CRP_103 94806 - 94991 + | hypothetical protein CRP_104 96165 - 94984 - | argininosuccinate synthase TERM 212 96234 - 96250 + r 71 -8.1 -3.23899 | CATATAGGTTATGTC TTAGGTT GCA AACCTAA TTAAATTGGTTCGAA CRP_105 97107 - 96343 - | dihydrodipicolinate synthase TERM 213 96615 - 96628 + g 75 -2.5 -6.17268 | overlap 96592 96605 96626 TTATTTTAATTTTTT TAATT AATA AATTA TTTTTTTTATTATAA TERM 214 96682 - 96656 - G 71 -8.3 -3.07947 | opp_overlap 96629 96626, overlap 96629 96647 TAAGAATTTTTAATA GAAAAAATTAT TTTTG ATAATTTTTTC ATAAAAAAAAATGAA TERM 215 96709 - 96694 - G 75 -2.6 -6.22802 | TTTCATAAAAAAAAA TGAAAT ATAA ATTCCA GTTCTTTTCGGTATA TERM 216 96927 - 96950 + g 85 -5.4 -5.7946 | opp_overlap 96927 96942 TTTTATATTTATTAA CATATTTAGA TAAA TCAAAATATG TTTTTTTGTTAAAAA TERM 217 97228 - 97261 + rH 84 -4.3 -6.11019 | gap 1, opp_overlap 97227 97252, overlap 97229 97251 97252 CTTATAAAATTTAAT TTTTTTTTTA-TATTT TAT AAATAATAAAAAAAAG TTTTTTTTAATTTTT CRP_106 97515 - 97204 - | hypothetical protein TERM 218 97251 - 97271 + gH 72 -2.7 -5.79595 | opp_overlap 97227 97252 97262, overlap 97229 97228 97252 97262 TATATTTTATAAATA ATAAAAAAA AGT TTTTTTTAA TTTTTTCTTTTAAAA TERM 219 97731 - 97715 - gR 82 -5.3 -5.66926 | opp_overlap 97715 TCAAAAAAAAGAAAA TTTTTTT ATT AAAAAAA ATATTAGAATATATT TERM 220 97888 - 97872 - gR 79 -5.3 -5.34857 | opp_overlap 97872 97882, overlap 97882 CTAAATAAAATAAAA TTAAAAA AAA TTTTTAA TAAATTAAAAATATT TERM 221 97899 - 97882 - gR 81 -4.3 -6.07969 | opp_overlap 97872 97882, overlap 97872 TAAAATTAAAAAAAA TTTTTAA TAAA TTAAAAA TATTTTCGAATTCAA TERM 222 98053 - 98080 + Gr 81 -2.3 -6.38655 | gap 1, opp_overlap 98053 98073, overlap 98053 TAATTGTAAAAAAAA TTTTTTT-CTTT TTAAT AAAGCAAAAAAA TTTTTTTTTATATTT TERM 223 98079 - 98053 - gR 78 -3.9 -5.81032 | opp_overlap 98053 98053, overlap 98073 TAATTGTAAAAAAAA TTTTTTTCTTT TTAAT AAAGCAAAAAA ATTTTTTTTTATATT TERM 224 98125 - 98081 - gR 100 -7 -5.77856 | gap 1, opp_overlap 98080 98116, overlap 98073 98116 AATAAAGCAAAAAAA TTTTTTTTTATATTTAGAAAC TGAA GTTT-TAAAAATAAAAAAAAA AAATTTTTTTTATTC TERM 225 98137 - 98116 - gR 75 -6.1 -4.62471 | opp_overlap 98080 98116, overlap 98081 CTGAAGTTTTAAAAA TAAAAAAAA AAAA TTTTTTTTA TTCATTAAATATTAA TERM 226 98341 - 98323 - gR 70 -7.6 -3.44089 | overlap 98315 98322 ATCACAATATAAAAG TTTATAGT GAA ACTATAAA AAATAATCCACCAAT TERM 227 98485 - 98460 - gR 81 -5.7 -5.18643 | opp_overlap 98482, overlap 98482 GTAACTAAAAGAAAA TTTATATTTAA TGAT TTAAACATAAA AAATTTTTTTTTAAT TERM 228 98587 - 98577 - gR 78 -4 -5.81622 | opp_overlap 98577, overlap 98580 ACAAAACGAAAAAAA GTAT TAA ATAC TTTAAAATTTTGCAA TERM 229 98864 - 98851 - gR 72 -2.5 -5.7506 | opp_overlap 98855, overlap 98853 TAAAAAAAAACAAAA TATTT AGTA AAATA CTATACATTTGAAAG CRP_107 97509 - 98876 + | malate:quinone oxidoreductase CRP_108 100248 - 99010 - | aspartokinase TERM 230 99871 - 99881 + g 72 -2.6 -6.09888 | AACTGGTATTTGTTT TTTT TTT AAAA TTTTTTTTATTAAAA CRP_109 101231 - 100245 - | putative alanyl-tRNA synthetase TERM 231 100343 - 100372 + g 81 -6.8 -5.04249 | opp_overlap 100343 100345 TTTTTTTAATATATA TATTTTTTTTAA TTTTTT TTAAAAAAAATA TTTCTTTTTTAAGAA TERM 232 100458 - 100423 - G 70 -3.6 -5.58051 | overlap 100401 100428 100457 AAACAAAAAACAAAA TACACTTTTTTTTTTT TTAA AAAAAAATAAAATATA AAATACCAAATTTTA TERM 233 100500 - 100533 + g 95 -4.9 -6.47325 | opp_overlap 100500 100502 100523, overlap 100502 100523 ATATGAAAAAATAAG TATTTTTTTTATCAA CTTA TTAATAAAAAAAATG TTTTTTTTATTTTTT TERM 234 100523 - 100542 + g 72 -5.2 -5.09895 | opp_overlap 100502 100500 100523 100534, overlap 100502 100500 100535 TTATCAACTTATTAA TAAAAAAA ATGT TTTTTTTA TTTTTTAAATAACTA CRP_110 102118 - 101228 - | RecA recombinase TERM 235 102356 - 102330 - gH 100 -5.4 -7.14698 | opp_overlap 102330, overlap 102311 AAAAAAAAAAAAAAA TTTTAATTTTTT TAA AAAAAATAAAAA TAAGTTTTCGTAAAA TERM 236 103575 - 103548 - gH 81 -2.2 -6.38039 | opp_overlap 103570 TATTTAAAAAAAAAA TTAATAAATACA AAAA TATTTTTATTAA TAATATTTCTAAAAT CRP_111 102113 - 103993 + | valyl-tRNA synthetase CRP_112 103965 - 104492 + | alkyl hydroperoxide reductase CRP_113 105386 - 104493 - | transaldolase TERM 237 107009 - 106997 - R 78 -6.3 -4.82855 | overlap 106989 TATTAAACCTAAAAA TCCTA TTT TAGGA TTAAAGAACTTTTTA TERM 238 107300 - 107314 + r 71 -3.6 -5.50925 | AATTTCGGTATCTAT TTTAGC CCC GTTAAA TTTTTTGTATTAGTT TERM 239 107473 - 107498 + r 83 -10.5 -2.98719 | opp_overlap 107479, overlap 107467 107475 107479 GGTTGTTTCCCTTTT CACAAAGGATG TTAT CACCCTTTGTG TGTCTCCTATAATAA CRP_114 110920 - 110048 - | tryptophanyl-tRNA synthetase CRP_115 111066 - 110917 - | ribosomal protein L33 CRP_116 111242 - 111054 - | ribosomal protein L28 CRP_117 111563 - 111243 - | hypothetical protein TERM 240 111336 - 111356 + g 79 -7.1 -4.8245 | overlap 111341 CAATTTATTTTTTTT TTTATTTTT ATT AAAAATAAA TTTATTATTTTTATT TERM 241 111452 - 111418 - G 86 -4.6 -6.30182 | opp_overlap 111422 111423, overlap 111440 GGACAGAAAAAAAAA TTAATTTTTAAAAAAA AAA TATTTTTAAAATTTAA AATAACATTTTCTAA CRP_118 112711 - 111566 - | lysyl-tRNA synthetase TERM 242 112429 - 112416 - G 72 -2.5 -5.9667 | opp_overlap 112425, overlap 112417 112425 AAAAACATAAAAAAA TTTAA AAAA TTAAA AATTAAATTTTTAAT TERM 243 112443 - 112425 - G 81 -6.2 -5.32608 | opp_overlap 112425, overlap 112416 112417 112437 AAAAAATTTAAAAAA TTAAAAAT TAA ATTTTTAA TAGAAAAAATTTTTT TERM 244 112469 - 112453 - G 78 -5.3 -5.47159 | opp_overlap 112453 112453 112453, overlap 112446 112437 TTTTAATAGAAAAAA TTTTTTT CTT AAAAAAA AATTGTTTTTTAACA TERM 245 112584 - 112572 - G 70 -6.3 -4.53475 | ATTTTACAAAAAGAA GTGAT AAT ATCAC CCAATTTAACTTTAG TERM 246 112732 - 112757 + r 79 -3.5 -5.93252 | opp_overlap 112730 AATAAAATCAATATT TAAATTAAAAT AATC ATTTAAATTTA TTTTTTGTTTTTCAA CRP_119 113520 - 112708 - | peptide chain release factor B TERM 247 113129 - 113156 + g 85 -9.4 -3.94067 | GAAGTTTGTATTTTT TTAGAAGAAATC AGTG GATTTTTTCTAA TTATTCTGTGTAATC TERM 248 113220 - 113207 - G 86 -3.9 -6.47325 | AAAAAAGAAAAAAAA TTGTT AATT AACAA CAATGATTTTTTATA CRP_120 114821 - 113517 - | threonine synthase CRP_121 115951 - 114821 - | homoserine dehydrogenase TERM 249 114881 - 114893 + g 95 -3.5 -6.60239 | opp_overlap 114866 114880 114881 TAAAAAAAACAATAT TTTTT TAT AAAAA TTTTTTTTTGTTTTT TERM 250 115836 - 115852 + g 72 -5.3 -5.1471 | GTAGAAAATGTTTTG TTTAATT TAC AATTAAA TTTATTTTTTCTAGT CRP_122 116151 - 115948 - | hypothetical protein CRP_123 116314 - 116120 - | hypothetical protein CRP_124 116532 - 116311 - | ribosomal protein S16 CRP_125 117669 - 116674 - | ketol-acid reductoisomerase TERM 251 117710 - 117728 + r 77 -3.2 -6.07627 | opp_overlap 117711, overlap 117711 ACAAAAAATTATTCA ATATACTT GAT AAGTATAA TTTTTTTTTAAAACT TERM 252 117711 - 117727 + r 73 -6.7 -4.22949 | opp_overlap 117711, overlap 117710 CAAAAAATTATTCAA TATACTT GAT AAGTATA ATTTTTTTTTAAAAC CRP_126 118073 - 117687 - | hypothetical protein TERM 253 117916 - 117940 + gr 95 -6 -5.626 | opp_overlap 117919 AATTGATTAATTTTA TAATATTTAT CATTA ATAAATATTA TTTTTTTATGAAATA TERM 254 117976 - 117996 + gr 70 -7.1 -3.69341 | opp_overlap 117976 117975 GAAAAAAAAAAAATT TTTAAAAAT ATA ATTTTTAAA TTGATTTGTATTAAA CRP_127 119709 - 118045 - | acetolactate synthase large subunit TERM 255 118863 - 118883 + gr 81 -9.9 -2.91334 | opp_overlap 118867, overlap 118867 118874 TTTTAGCATAAGGCG CAAATAATC TTG GATTATTTG TAATTCTATCGTCTA TERM 256 119133 - 119147 + gr 71 -2.2 -5.8901 | opp_overlap 119135, overlap 119127 119135 TTGGTCTTTTATAAT TATTTA TAT TAAATG TTTTTTCTTTTATAT TERM 257 119160 - 119190 + gr 74 -7.2 -4.14392 | opp_overlap 119187 ATGTTTTTTCTTTTA TATTTTTTTTTTTT TTT AAAAAAAAAGGATA TTTATATCTAGATGT CRP_128 120320 - 119706 - | ribosomal large subunit pseudouridine synthase CRP_129 122787 - 120313 - | isoleucyl-tRNA synthetase TERM 258 120566 - 120583 + g 100 -4.3 -6.79027 | TTTAAAAAATTTGAA TAAAAAA TTGT TTTTTTA TTTTTTTTTTTTACA TERM 259 121024 - 121005 - G 74 -3.7 -5.89947 | TAAATTTAAAAAAAA TTCTTAT TTTTTT ATAAGAA ATAGATAAATTTTTA TERM 260 121391 - 121361 - G 76 -8.7 -3.72985 | overlap 121359 121362 CATACATCTAAAATA TTTTTTTTTTTTT TTTTT AAAAAAAAAAAAA CGTGTGAACTAAATG TERM 261 121391 - 121362 - G 76 -9.7 -2.83068 | overlap 121361 121359 ATACATCTAAAATAT TTTTTTTTTTTTT TTTT AAAAAAAAAAAAA CGTGTGAACTAAATG TERM 262 122011 - 121993 - G 70 -6.2 -4.38305 | opp_overlap 121991 121994, overlap 121973 121971 121991 TAAAAAAACAAAATA TTTTTTTT TAA AAAAAAAA GTACTATTAATATAT TERM 263 122296 - 122318 + g 80 -8 -4.52101 | opp_overlap 122294 122296, overlap 122317 ATTACAATTAAAACA TAAAAAATTA GGA TAATTTTTTA TTTTAATTAATTCTT TERM 264 122318 - 122296 - G 74 -8 -3.85899 | opp_overlap 122296 122317, overlap 122294 ATTACAATTAAAACA TAAAAAATTA GGA TAATTTTTTA TTTTAATTAATTCTT TERM 265 122529 - 122541 + g 72 -9.1 -2.72559 | opp_overlap 122519 122526 122525, overlap 122526 CAATAGGTAAACCGT GGGTG TCC CACCC TAGATTATTTAATAA CRP_130 122923 - 122777 - | hypothetical protein CRP_131 123672 - 122908 - | putative GTPase TERM 266 123582 - 123602 + g 73 -6.3 -4.58283 | overlap 123572 CTCCATTTCCTCCAT TTGGAAATA TTT TATTTCTAA TTTTTAAAAAACTTA rpmA 123916 - 123662 - | 50S ribosomal protein L27 CRP_133 124227 - 123919 - | hypothetical protein CRP_134 124460 - 124224 - | hypothetical protein TERM 267 124341 - 124351 + g 79 -2.6 -6.50278 | opp_overlap 124341, overlap 124328 124337 TTTTATTTTTGTAAA TAAT TTA ATTA TTTTTTTTTTAATTT CRP_135 125418 - 124450 - | RNA polymerase alpha subunit TERM 268 124777 - 124757 - G 76 -7.1 -4.61284 | opp_overlap 124756 AATATTAAATCAAAA TATTTTTTA ATA TAAAAAATA CAATTTTTAAAACAA CRP_136 126008 - 125415 - | ribosomal protein S4 TERM 269 125558 - 125570 + g 70 -3.5 -5.73978 | opp_overlap 125557 AATCATATAAATATT TTTTT AAT AAAAA TTTTTTGTTTATAGT TERM 270 125781 - 125753 - G 83 -10.7 -2.72094 | opp_overlap 125771, overlap 125750 125758 AATTAATTAAATCGA TATTATTAAAAAA ATT TTTTTTAATAATA AAATAAATTTTTTTA TERM 271 125797 - 125758 - G 75 -9.8 -2.68799 | opp_overlap 125771, overlap 125753 125750 ATTAAATCGATATTA TTAAAAAAATTTTTTTTA ATAA TAAAATAAATTTTTTTAA ATTCTTTTTCAAAGA CRP_137 126361 - 126005 - | 30S ribosomal protein S11 CRP_138 126704 - 126348 - | ribosomal protein S13 CRP_139 126814 - 126701 - | ribosomal protein L36 CRP_140 127047 - 126811 - | putative ribosomal protein L15 CRP_141 127466 - 127047 - | ribosomal protein S5 CRP_142 127674 - 127438 - | hypothetical protein TERM 272 127505 - 127547 + gr 95 -6.1 -5.54192 | gap 1, opp_overlap 127511 127520, overlap 127508 127511 127532 ATATGACCTTTATAT TTA-TAATTTTTAAAATGAA ATTC TTCATTATAAAAATTAGTAA TTTTTTTAAATTCGT TERM 273 127508 - 127543 + gr 75 -9.4 -2.69859 | opp_overlap 127511 127520, overlap 127505 127511 127532 TGACCTTTATATTTA TAATTTTTAAAATGAA ATTC TTCATTATAAAAATTA GTAATTTTTTTAAAT CRP_143 128216 - 127671 - | ribosomal protein L6 TERM 274 127738 - 127748 + gr 73 -4 -5.48054 | ATACCTTTTTTTTTA TATG GAT CATA TTTTTTAATTTTAGT CRP_144 128539 - 128168 - | ribosomal protein S8 TERM 275 128354 - 128364 + gr 91 -2.6 -6.71862 | AATTATAGTTTTAAT TATT ACA AATA TTTTTTTTTTATTTT CRP_145 128820 - 128533 - | ribosomal protein S14 CRP_146 129322 - 128822 - | ribosomal protein L5 CRP_147 129687 - 129319 - | ribosomal protein L14 CRP_148 129935 - 129684 - | ribosomal protein S17 TERM 276 129717 - 129733 + g 71 -2.4 -6.09888 | TTCAATAATTTTAAC TAATAT CCAAA ATATTA TTTTTTTTATTGGAC rplP 130335 - 129928 - | 50S ribosomal protein L16 CRP_150 130936 - 130325 - | ribosomal protein S3 CRP_151 131234 - 130920 - | putative ribosomal protein L22 CRP_152 131497 - 131231 - | ribosomal protein S19 rplB 132201 - 131494 - | 50S ribosomal protein L2 TERM 277 131840 - 131820 - G 72 -5.5 -5.04987 | opp_overlap 131829 131830 AAGATCTTGAAAAAA TTCCTCCAA TTT TTGGAAAAA TTTCAACACAATTAA CRP_154 132716 - 132198 - | ribosomal protein L4 TERM 278 132357 - 132335 - G 77 -3.6 -6.06723 | overlap 132295 132337 TTTCCCAAAAAAAAA TATTTTTTTT ATC AAAAAAAAAA GTTAAAAAAAAAAAA TERM 279 132355 - 132337 - G 73 -6.2 -4.69028 | overlap 132295 132335 TCCCAAAAAAAAATA TTTTTTTT ATC AAAAAAAA AAGTTAAAAAAAAAA TERM 280 132498 - 132512 + g 100 -8.6 -5.36441 | opp_overlap 132506 132507 TGTAACTCCTCCACT TCTCCA AAT TGGAGA TTTTTTATCTCCAGC CRP_155 133123 - 132713 - | ribosomal protein L3 TERM 281 132758 - 132779 + g 100 -6.1 -6.36459 | TTTACTACCTGGTAT TATTTTTTT AATA AAAAAAATA TTTTTTTTTCTTAGA TERM 282 133015 - 133029 + g 77 -4.4 -5.83226 | opp_overlap 133009, overlap 133001 133016 TTTTTAAAGTTTTAA TTTTAA AAT TTAAAA TTTTTTTGTTAAATT CRP_156 133416 - 133120 - | ribosomal protein S10 TERM 283 133375 - 133363 - G 95 -3.5 -6.58542 | opp_overlap 133335, overlap 133367 TTTTAAAAAAAAAAA TAAAT AAG ATTTA ATCTTAAAAAAAAAA TERM 284 133381 - 133367 - G 84 -5.8 -5.57765 | opp_overlap 133335, overlap 133363 AAAAAAAAAAATAAA TAAGAT TTA ATCTTA AAAAAAAAAAAAGAT CRP_157 134605 - 133409 - | elongation factor Tu TERM 285 133644 - 133632 - G 74 -4.8 -5.41143 | opp_overlap 133618 TATCCTTTAAAAAAA GGAG TATGT CTCC CACCTTCTTCTTTTG CRP_158 136653 - 134608 - | elongation factor G CRP_159 137120 - 136650 - | 30S ribosomal protein S7 rpsL 137482 - 137120 - | 30S ribosomal protein S12 CRP_161 141362 - 137484 - | RNA polymerase beta' subunit TERM 286 139306 - 139282 - G 71 -8.1 -3.56836 | opp_overlap 139282 AAACCATTTTTTAAA TTATCAAAAAT CGG ATCTTTGATAA TATCTCCATTTGATT TERM 287 139489 - 139471 - G 72 -3.2 -5.80364 | ATTTTAACAAAAAAA TTGTTTAA TAA TTCAACAA TAGAAAAAATATTAT TERM 288 140729 - 140741 + g 76 -7.7 -4.42062 | GTATTTTTTTTAGTA CCATC CAA GATGG TTTATTTCCGGAATA CRP_162 145162 - 141359 - | RNA polymerase beta subunit TERM 289 142170 - 142182 + g 70 -6.3 -4.42619 | ACTCCTTTATTTCCA TGTCT ACC AGACA TTTTATCACCTATTG TERM 290 142345 - 142359 + g 77 -4.4 -5.7946 | opp_overlap 142344 142345 142349, overlap 142335 142344 142333 142347 142349 TGTTTTTAAATATAT TTAATT TAA AATTAA TTTTTTTATTAAAAC TERM 291 142587 - 142553 - G 80 -9 -3.68222 | opp_overlap 142530 142545 142555 142559 142567, overlap 142559 TTCGAACTTTAACAA TTTAAATATTTTATTT TTA AAATAAAATATTTTAA AATCGTTAACTGCAA TERM 292 142581 - 142559 - G 74 -8 -3.85389 | opp_overlap 142555 142559 142567, overlap 142553 CTTTAACAATTTAAA TATTTTATTT TTA AAATAAAATA TTTTAAAATCGTTAA TERM 293 142559 - 142581 + g 76 -8 -4.17023 | opp_overlap 142559 142553, overlap 142555 142567 CTTTAACAATTTAAA TATTTTATTT TTA AAATAAAATA TTTTAAAATCGTTAA TERM 294 143140 - 143174 + g 77 -9 -3.53722 | opp_overlap 143148 143151 143164, overlap 143137 143151 CTAAAAAATATGTTT TTATAAAATTATTATT TTT AATAATTATTTTATAA TTATCTGAATATAAA TERM 295 144310 - 144282 - G 89 -10.7 -3.90038 | overlap 144276 ATCAAATAATTTAAA TTTATTATTTTTT TTA AAAAAATAATAAA AAAAAAATAAATAGG TERM 296 144450 - 144475 + g 79 -2.9 -6.4753 | gap 1, opp_overlap 144450 144463 ATACTAATGCAAATA TATTTATTATAA ATT TTATAA-AAATA TTTTTTTTTATTTAA CRP_163 145500 - 145159 - | ribosomal protein L7/L12 CRP_164 145918 - 145478 - | hypothetical protein TERM 297 145800 - 145828 + g 74 -4.9 -5.42198 | opp_overlap 145819 145820, overlap 145820 TTTGTTTTGTAATTT TTTTTTTTAAT ATTATCA ATTAAAAAAAA TTTTATTTTTTCAAA CRP_165 146490 - 145915 - | hypothetical protein TERM 298 146035 - 146011 - G 85 -8.9 -4.05788 | overlap 146006 146027 TTTTTTTAAATTAAA TATTAAAAATT CAT AATTTTTAATA ATCATAGAATTATAA TERM 299 146263 - 146246 - G 72 -5.7 -4.8667 | opp_overlap 146251 TATACTTTAGAAAAA TTTACTT TTTT AAGTAAA AAATCATCTATAAAA CRP_166 146899 - 146471 - | ribosomal protein L11 TERM 300 146958 - 146978 + r 72 -8.5 -2.80236 | overlap 146957 146960 146973 GAATTGAACCTCTAT TATTGATTT TGG AAATCAATA CTTTACCGTTAAGTT CRP_167 147530 - 147249 - | putative cytochrome O ubiquinol oxidase subunit IV TERM 301 147371 - 147339 - GR 100 -10.3 -5.5208 | opp_overlap 147330, overlap 147332 147330 CGATAATATAAAAAA TTTTTTTTTAAATCT ATT AAATTTAAAAAAAAA AAATAATTGAAAAAA CRP_168 148012 - 147497 - | cytochrome O ubiquinol oxidase subunit III TERM 302 147708 - 147668 - GR 79 -7.3 -4.67011 | opp_overlap 147673 147678 147704, overlap 147673 147699 147704 AAGTGCATGGAAAAA TAAAATTAAATAATAATTT GAC AAATAATTATTTAATTTAA AACTTAAATTTAAAA TERM 303 147703 - 147673 - GR 89 -7.2 -5.2853 | opp_overlap 147673 147678, overlap 147668 147699 CATGGAAAAATAAAA TTAAATAATAATTT GAC AAATAATTATTTAA TTTAAAACTTAAATT TERM 304 147673 - 147703 + gr 70 -7.2 -3.61536 | opp_overlap 147673 147668 147699, overlap 147678 CATGGAAAAATAAAA TTAAATAATAATTT GAC AAATAATTATTTAA TTTAAAACTTAAATT TERM 305 147877 - 147893 + gr 73 -5.3 -5.00616 | opp_overlap 147871 147883 147892, overlap 147871 147865 147890 147892 CTATTAAAATTATTC TATAATT ATA AATTATA TTTTTTAAAAAAAAA CRP_169 149825 - 148005 - | cytochrome O ubiquinol oxidase subunit I TERM 306 148452 - 148440 - G 71 -4.9 -5.28315 | ATAAAATGGAAAAAA TGTTA AAA TAACA CCTATTAACCAAAAT TERM 307 148850 - 148840 - G 78 -5.4 -5.44119 | overlap 148842 CCCATTGTAAAAAAA TGGT GTA ACCA CACTAAAAAAGATAA CRP_170 150580 - 149822 - | cytochrome O ubiquinol oxidase subunit II TERM 308 150724 - 150714 - gH 82 -2.6 -6.32017 | opp_overlap 150720, overlap 150678 150720 AACAAATAAAAAAAA TAAA AAT TTTA ACTATTAAAATATTT TERM 309 150734 - 150720 - gH 85 -4.4 -5.94743 | opp_overlap 150720, overlap 150714 TAAAAAAAATAAAAA TTTTAA CTA TTAAAA TATTTCAAAATAAAG TERM 310 150893 - 150879 - gH 82 -4.4 -5.81412 | TTTATTTAAAAAAAA TTTTTT ATA AAAAAA ACAAAAATAAAAAGA TERM 311 150928 - 150901 - gH 85 -4.4 -5.94743 | TAAAAAAAACAAAAA TAAAAAGAAAAA TACT TTTTTTTTTTTA AAAATACATAAAAAT CRP_171 150557 - 151297 + | hypothetical protein TERM 312 151520 - 151493 - g 84 -4.4 -6.17292 | gap 1 AAAGTTAAAAAAAAA TTCGTTTAGATTT CAA AAATCTAA-CAAA AAAATTTTAAGTCCT CRP_172 151290 - 152183 + | branched-chain amino acid aminotransferase CRP_173 152194 - 153258 + | histidyl-tRNA synthetase TERM 313 153265 - 153279 + G 84 -5.8 -5.75945 | opp_overlap 153255 153254 153265 AAAACTTAAAAAAAA TGTTTT TTT AAAACA TTTTTTTTGCAAAAT TERM 314 153279 - 153265 - g 87 -5.8 -5.91981 | opp_overlap 153265, overlap 153255 153254 AAAACTTAAAAAAAA TGTTTT TTT AAAACA TTTTTTTTGCAAAAT TERM 315 153376 - 153358 - g 70 -4 -5.57054 | opp_overlap 153367, overlap 153367 AATAATTCAAAAAAA CAAAAAAT ATA ATTTTTTA AATTATTATTATTTA TERM 316 153506 - 153493 - g 100 -2.5 -7.07835 | opp_overlap 153493, overlap 153501 TAAAAAAAAAAAAAA TATAA TAAT TTATA TTAATAAAAAAAACA CRP_174 153236 - 153562 + | hypothetical protein TERM 317 153574 - 153546 - f 89 -6.3 -5.33465 | opp_overlap 153550, overlap 153564 AAAAAAAAAAAATAA TATGTTTAAAATT TTA AATTTTAAAGATA AAAGAATTAGATTAT CRP_175 153547 - 154011 + | peptide deformylase TERM 318 154043 - 154032 - g 93 -3 -6.60575 | ATTCAAAAAAAAAAA TTTC AAAA GAAA ATAATTTATAAAAAT TERM 319 154653 - 154693 + G 93 -2.1 -7.07835 | opp_overlap 154659 154661, overlap 154661 ATAAATTATTTATTT TTAGAATATAAAAATGCAA TTT TTATTTTTTTAAATTCTAA TTTTTTTTTTTTTTA TERM 320 154661 - 154677 + G 78 -5.3 -5.55698 | opp_overlap 154661 154659, overlap 154653 TTTATTTTTAGAATA TAAAAAT GCA ATTTTTA TTTTTTTAAATTCTA TERM 321 154925 - 154915 - g 72 -2.6 -6.04324 | overlap 154916 TTAAAAAAGAAAAAA TTTT TAA AAAA ATAAAAAAGTATCTT CRP_176 154008 - 155216 + | hypothetical protein TERM 322 155343 - 155355 + G 71 -4.9 -5.24796 | opp_overlap 155343 155349, overlap 155337 155346 ATTTAATTAAAAAAA CAAAA ATT TTTTG TTTTTATTCTATAAA TERM 323 155355 - 155343 - g 77 -4.9 -5.64006 | opp_overlap 155343 155337 155346, overlap 155349 ATTTAATTAAAAAAA CAAAA ATT TTTTG TTTTTATTCTATAAA TERM 324 155379 - 155349 - g 100 -8.6 -5.86609 | opp_overlap 155343 155337 155346, overlap 155343 TTAAAAAAACAAAAA TTTTTTGTTTTTAT TCT ATAAAAACAAATAA TAATAAATTTTTATT CRP_177 155213 - 156409 + | diaminopimelate decarboxylase CRP_178 156402 - 157157 + | diaminopimelate epimerase TERM 325 157221 - 157202 - g 78 -5.2 -5.46698 | opp_overlap 157195 157202, overlap 157195 TGGAAAATTAAAAAA TTTTTATT TTTA AATAAAAA TTCTAAAAAAATGGG TERM 326 157464 - 157452 - g 74 -3.5 -5.84381 | opp_overlap 157453, overlap 157444 157453 TTATTAATAAAAAAA TTTTT TTA AAAAA AGATAATTGGAATTC TERM 327 157715 - 157725 + G 77 -4 -6.09133 | opp_overlap 157710, overlap 157710 157715 AAAATATTAATTTAT GTTT ATA AAAC TTTTTTTTTAAACTA CRP_179 157154 - 157897 + | glycyl-tRNA synthetase alpha subunit TERM 328 157905 - 157931 + G 89 -7.6 -5.26119 | opp_overlap 157904 157905, overlap 157906 157925 AAATATGAATAATAT TTTAAAAAAAAA AAT TTTTTTTTTAAG TTTTATTTTTACAAA TERM 329 157906 - 157930 + G 80 -8.9 -3.74587 | opp_overlap 157904 157905, overlap 157905 157925 AATATGAATAATATT TTAAAAAAAAA AAT TTTTTTTTTAA GTTTTATTTTTACAA TERM 330 158169 - 158155 - g 77 -4.4 -5.83226 | opp_overlap 158158, overlap 158136 158158 AATTTAACAAAAAAA TATTTT ATT AAAATA ATAAATTTTAAAAAC TERM 331 158211 - 158238 + G 74 -3.6 -5.86965 | opp_overlap 158215, overlap 158215 158216 TAATTATAAAAAAAG TATATTTAAAAC TTAT GTTTTAAGTTTA TTTTTTTTAATAAAT TERM 332 158353 - 158331 - g 70 -3.6 -5.67529 | opp_overlap 158331, overlap 158334 AATTAAAAATAAAAA TTATATTATA TTT TATAATAGAA TGTTAATTTTAAAAT CRP_180 157894 - 158382 + | hypothetical protein CRP_181 158603 - 158400 - | cold shock protein TERM 333 158633 - 158623 - R 75 -2.6 -6.06723 | opp_overlap 158609 TTTTTTAAAAAAAAA TTTA TTT TAAA AATTAATAACGTATT CRP_182 159662 - 158649 - | hypothetical protein TERM 334 159147 - 159093 - G 74 -4.8 -5.39905 | ATTAAACAACAAAAA TTTTTTAAAATTAAAAATATAAAAAA AAT CTTCTGTTAATTTTAATTTTAAAAAA AAGAATGTTTTCTTA