TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.471969 %AT, 4045919 nt, 34913 terms. Intergenic: 0.541951 %AT, H2T: 486868 nt, 3607 terms; T2T: 113501 nt, 1913 terms; H2H: 175080 nt, 1956 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|192358779|ref|NC_010995.1| Cellvibrio japonicus Ueda107, complete genome (length 4576573) TERM 1 124 - 149 + G 74 -2.5 -5.04733 | gap 1, overlap 126 TCGGCAGGTCCTGAC CAGTTGCGC-CT TTT AGCGCCCAACCG TTTTATTTGTGATTG dnaA 1 - 1605 + | chromosomal replication initiator protein DnaA TERM 2 1980 - 1960 - g 70 -4 -4.63218 | opp_overlap 1978 TTTTCTTGAAGAAAA CCGTATTT TGGTC AAATCCGG TCGCAGCCGTTTTAC dnaN 1676 - 2779 + | DNA polymerase III, beta subunit TERM 3 2765 - 2789 + F 100 -15.1 -5.14563 | overlap 2788 CTCTATGTTGTTATG CCAATGCGTCT CTA AGGCGCATTGG TTTTTTACTGAAACC TERM 4 2788 - 2804 + F 75 -3 -5.25699 | overlap 2765 TCTCTAAGGCGCATT GGTTTT TTACT GAAACC TTTTTGTTATGTCCT TERM 5 2885 - 2873 - g 73 -9.1 -3.58726 | opp_overlap 2868 TCCGTCGATATAGAA CCCTC GTC GAGGG TCAATCTTATTTACG TERM 6 3885 - 3870 - g 78 -7.6 -4.31043 | AGATAACACCGAAAA TGTTCC ACGT GGAACA TGGTAGGGTAAGTTG recF 2813 - 3910 + | RecF protein TERM 7 5457 - 5444 - g 72 -4.5 -4.63542 | TACAACCCGGAAAAA CTGCG CTAC CACAG CATCATTATCATGAC TERM 8 5738 - 5728 - g 70 -6.8 -4.08216 | overlap 5729 TGAGGCCCTGGAAAA GCTG GTA CAGC AGTACCGCAAAGTGA gyrB 3980 - 6400 + | DNA gyrase, B subunit CJA_0005 6530 - 6703 + | hypothetical protein TERM 9 6778 - 6761 - T 88 -12.7 -3.60098 | opp_overlap 6761 ATGTGTTATTGGAAA GGGGAGC TGCG GCTCCCC TTTTTCGCAGGTTGG TERM 10 6761 - 6778 + T 100 -12.7 -4.59853 | opp_overlap 6761 ATGTGTTATTGGAAA GGGGAGC TGCG GCTCCCC TTTTTCGCAGGTTGG amy13G 9640 - 6857 - | alpha-amylase, putative, amy13G TERM 11 7138 - 7164 + g 75 -11.6 -2.90194 | overlap 7132 GGGTTGTCGGCGCTT TCTGCAAGGCGG GAA CTGCTTTGCGGA TCTGGTTCAGGCGCT TERM 12 7429 - 7439 + g 70 -6.8 -4.07885 | AGTCGTTATCCGGGC CCAC ATC GTGG TTTTGGAAGAACGTC TERM 13 7676 - 7693 + g 70 -6.9 -4.12198 | GTCACTGGCGATTTC GGAACCG AAGC CGGTGCC TTTTACCAGGTTCTC TERM 14 8477 - 8491 + g 72 -5 -4.65895 | GGTAAAGCCCAGGTC CTTGAT GTA ATCGAG TTTTTCAATCAACCC TERM 15 9217 - 9231 + g 72 -10 -3.38812 | overlap 9215 GGCCATCAAAGGTGA CCTGGA CAG TCCAGG TGTTATTGGCGACCA TERM 16 10028 - 9986 - H 100 -15.1 -3.42503 | opp_overlap 9979 9990, overlap 9989 CGGTAATATCGACAA TTAGCTGCATACGTATGCA GTTTT TGAATACGTATGCAGCAAA ATTCAACTTTTGGCG TERM 17 10025 - 9989 - H 100 -16.8 -2.86426 | opp_overlap 9979 9990, overlap 9986 TAATATCGACAATTA GCTGCATACGTATGCA GTTTT TGAATACGTATGCAGC AAAATTCAACTTTTG TERM 18 9990 - 10005 + H 82 -7.6 -4.67755 | opp_overlap 9989 9986, overlap 9979 AATATCGACAATTAG CTGCAT ACGT ATGCAG TTTTTGAATACGTAT TERM 19 10054 - 10071 + H 71 -6.9 -4.08394 | opp_overlap 10054 TGGCGTGGGTATACA CCTGGGC TTTT GCCAAGG TTTTCCCGGCGCTCT cbp2A 10299 - 12284 + | carbohydrate binding protein, cbp2A TERM 20 12293 - 12319 + T 100 -13.7 -3.86015 | opp_overlap 12297 TTTGTAAGATCCGAA CCAACCGGAGC GCCAG GCCCCGGTTGG TTTATGGAAACCATC TERM 21 12315 - 12297 - T 73 -9.5 -3.37499 | opp_overlap 12293 TAAGATCCGAACCAA CCGGAGC GCCAG GCCCCGG TTGGTTTATGGAAAC CJA_0008 13754 - 12342 - | transcriptional regulatory protein TERM 22 13054 - 13015 - G 77 -7.1 -4.57482 | overlap 13011 13017 TCATCGAGAAACAAA GTGC-CGCCATCGGCCACT TCAA AGCGGCCCA-GGCGCGCGC TCACCGCACCGGAAA TERM 23 13082 - 13072 - G 72 -4.6 -4.62336 | ACCGCACCGGAAAAA GCGC CGC GCAC ATGGCCGAAAAACTC TERM 24 14456 - 14479 + G 71 -10.9 -2.85996 | overlap 14456 TTTATTCGCGCTGTT GGCGGCGGC ACCCTG GCCGCCGCA CTTTCCTCGGTACTG TERM 25 14456 - 14480 + G 84 -10.7 -3.77196 | gap 1, overlap 14456 TTTATTCGCGCTGTT G-GCGGCGGC ACCCTG GCCGCCGCAC TTTCCTCGGTACTGC TERM 26 14604 - 14616 + G 75 -4.8 -4.82901 | CGCCGATCATTATGG CCCA CCCCA TGGG TTTTTATGCCAAACA TERM 27 14816 - 14800 - g 70 -10.9 -2.78032 | opp_overlap 14803, overlap 14799 14797 CGCCGTGGAAAATAT CAATGGC CAA GCCATTG TGCTGCATGTGGATC TERM 28 15523 - 15502 - g 76 -10.9 -3.37685 | gap 1, overlap 15500 AAAAGTGCTGAAAGA GCTGGGCTAC CCG GT-GCCCAGC GGCACTAACAAAAAT nrtA 14174 - 15616 + | ABC transporter nitrate-binding protein TERM 29 15885 - 15899 + G 70 -4.2 -4.66163 | GGGCTATTCGATTTA CCGG GTGCTTA CCGG TTTTTCACTCGCGCT CJA_0010 15619 - 16446 + | possible nitrate transport system permease protein TERM 30 17358 - 17310 - g 74 -7.6 -4.13767 | gap 2, opp_overlap 17315 17316, overlap 17292 17311 17323 17327 CCCCCGATGTTAAAA CCACCGGTGAACAGGAAGGTGCAA AGC CTGCACCTTCC-ATTCAC-GTTGT TAATGCCTGAGAGGA TERM 31 17357 - 17311 - g 72 -11.1 -3.08046 | gap 2, opp_overlap 17315 17316, overlap 17292 17310 17323 17327 CCCCGATGTTAAAAC CACCGGTGAACAGGAAGGTGCAA AGC CTGCACCTTCC-ATTCAC-GTTG TTAATGCCTGAGAGG TERM 32 17315 - 17354 + G 72 -8.7 -3.73647 | gap 1, opp_overlap 17292 17311 17310 17323 17327, overlap 17316 GATGTTAAAACCACC GGTGAACAGGAAGGTGCA AAGCC TGCACCTTCCA-TTCACG TTGTTAATGCCTGAG TERM 33 17316 - 17353 + G 78 -12.2 -2.83867 | gap 1, opp_overlap 17292 17311 17310 17323 17327, overlap 17315 ATGTTAAAACCACCG GTGAACAGGAAGGTGCA AAGCC TGCACCTTCCA-TTCAC GTTGTTAATGCCTGA TERM 34 17347 - 17323 - g 93 -15.1 -3.03619 | opp_overlap 17316 17315, overlap 17311 17310 17327 AACCACCGGTGAACA GGAAGGTGCAA AGC CTGCACCTTCC ATTCACGTTGTTAAT nrtC 16451 - 17368 + | ABC transporter ATP-binding protein cynS 17380 - 17820 + | cyanate hydratase CJA_0013 17829 - 18284 + | hypothetical protein CJA_0014 18486 - 19334 + | hypothetical protein CJA_0015 19321 - 20169 + | transglutaminase-like superfamily protein TERM 35 20459 - 20441 - g 70 -4.6 -4.56187 | TAGAATCAAAAACAA TGGTGT GCTAACT ACACCA GTCGCCAGCAGTACT TERM 36 21050 - 21038 - g 72 -7.7 -3.97622 | opp_overlap 21038 21037, overlap 21033 21043 TTACTTAAAAGACAA GACAG GAA CTGTC GTTCATCCCTTTGTC TERM 37 22160 - 22148 - g 72 -7.7 -3.97622 | opp_overlap 22147 22148 22153, overlap 22143 22153 TTACTTAAAAGACAA GACAG GAA CTGTC GTTCATCCTTTTGTC TERM 38 22621 - 22639 + G 72 -7.4 -3.91908 | overlap 22620 TGGACAGTCTTACCT TGTCTCTG GCA CAGAGCCA TATTTTTAACAGTAT TERM 39 22723 - 22737 + G 72 -7.8 -3.9461 | overlap 22724 CCCAGGGAATTATCC TGGAGG CTG CCTCCG TTGTTATTGAAGAAG TERM 40 23819 - 23795 - g 85 -2.8 -5.38047 | overlap 23798 23812 TATTCATATAAAAAA TAATGGTGTG TTAAC CACACCAGTG GCGAGTAGTACGTTT TERM 41 23816 - 23798 - g 93 -8.9 -4.77122 | overlap 23795 23812 TCATATAAAAAATAA TGGTGTG TTAAC CACACCA GTGGCGAGTAGTACG TERM 42 24416 - 24404 - g 72 -7.7 -3.97622 | opp_overlap 24404 24403 24409, overlap 24399 24409 TTACTTAAAAGACAA GACAG GAA CTGTC GTTCATCCTTTTGTC TERM 43 24979 - 24993 + G 72 -7.8 -3.95324 | overlap 24980 CCGAAGGAATTATCC TGGAGG CTG CCTCCG TTGTTATTGAAGATG TERM 44 30462 - 30437 - g 70 -6.1 -4.29325 | TATGAATACGGAAAA CTTTACCCGTG GCGG CTCAGGCAAAG TCTCTTTTAACCTGA TERM 45 32264 - 32247 - g 74 -2.5 -5.14563 | overlap 32249 CCTGTTATGAAAAAA GGCCAGG TTTT CCAGGGC GAATTCACCTTGACT CJA_0016 20181 - 32762 + | Fibronectin type III domain protein TERM 46 34213 - 34186 - g 70 -10.8 -2.78266 | gap 1, opp_overlap 34186, overlap 34183 34188 AACCTACGAATACGA TACCAGCGGTAAT TTA ATTACC-CTGGTA GAGGCTAAGGGTACA TERM 47 35377 - 35362 - g 90 -7.6 -4.98255 | overlap 35370 CTTCAATGATAAAAA CCAGTT AACC AACTGG AGCCAGCAGGTATCA CJA_0017 32831 - 37036 + | Rhsfamily protein TERM 48 37524 - 37542 + F 77 -8.8 -3.9749 | opp_overlap 37522 37523 GAATGATAAGGAACT CCCTGCAT CAC AGGCAGGG TTTGGTCTTCTGGCT CJA_0018 37736 - 39121 + | Rhs family protein TERM 49 39249 - 39259 + F 76 -4 -4.98758 | TATAAAGAATAATTT TTTC GGT GAAA TTTTTATGGATTTTT TERM 50 39263 - 39281 + F 73 -2.5 -5.10004 | TTTTCGGTGAAATTT TTATGGA TTTTT TTCATAA TTTTTCCTTGTTTTT TERM 51 39345 - 39355 + F 75 -2.6 -5.26907 | overlap 39349 39351 CAGCCCCTACTATAC TTTT TAT AAAA TTTTATTTTATGTTG TERM 52 39349 - 39367 + F 73 -4 -4.75967 | overlap 39345 39351 CCCTACTATACTTTT TATAAAAT TTT ATTTTATG TTGTTTTTTCTACTT TERM 53 39565 - 39537 - f 72 -2.6 -4.93696 | gap 1, overlap 39539 TTTAAACATCAAAAA GATTGAAAGATGC GAGG GCAT-TTTCAATT ACGGTAAGGCGAACA TERM 54 40690 - 40676 - g 70 -10 -3.23274 | opp_overlap 40674 40676, overlap 40671 TGGCCTATAACGCAA CACGCA ATT TGCGTG TATTTGAGTCAGAGC TERM 55 40676 - 40690 + G 72 -10 -3.40597 | opp_overlap 40671 40676, overlap 40674 TGGCCTATAACGCAA CACGCA ATT TGCGTG TATTTGAGTCAGAGC cbp35A 39679 - 44271 + | carbohydrate binding protein, putative, cbp35A CJA_0019 44432 - 44250 - | hypothetical protein TERM 56 44298 - 44314 + gT 75 -10.9 -3.05069 | AATGGCAACCCCTAT CCGGTAT TCA ATACCGG TGCTTATTTGATACA CJA_0021 45153 - 44404 - | hypothetical protein TERM 57 44774 - 44809 + gr 78 -9 -3.89346 | gap 1, opp_overlap 44773 44767, overlap 44775 44777 ACACAAAATAAACTG TGT-GCACTGGTGATGC TGG GCTTCACCGGTGCTGCG TTTATGGAATACCAA TERM 58 44775 - 44808 + gr 72 -10.3 -2.93393 | gap 1, opp_overlap 44773 44767, overlap 44774 44777 CACAAAATAAACTGT GT-GCACTGGTGATGC TGG GCTTCACCGGTGCTGC GTTTATGGAATACCA TERM 59 44777 - 44805 + gr 95 -15.3 -2.7083 | opp_overlap 44773 44767, overlap 44775 44774 CAAAATAAACTGTGT GCACTGGTGATGC TGG GCTTCACCGGTGC TGCGTTTATGGAATA CJA_0022 45524 - 45153 - | hypothetical protein CJA_0023 46134 - 45586 - | transcriptional regulator, AsnC family TERM 60 46111 - 46091 - GH 91 -5.6 -5.45652 | opp_overlap 46091 ATTGCCAATAAAAAA CAATAATA GGCAA TATTATTG TTTAAATGATCGTTT TERM 61 46194 - 46212 + GH 81 -7.3 -4.70879 | opp_overlap 46191 46192 46193 ATGCTGATAAAAGCC CCGGCGC TACCC GCGCGGG TTTTTGGGGTTTCCG TERM 62 46937 - 46927 - gH 91 -5.4 -5.40474 | AGGGTGTGAAAAAAA TTGC CTT GCAA GGGACCCAATGGTGT leuA 46125 - 48146 + | 2-isopropylmalate synthase TERM 63 48175 - 48200 + FH 100 -10.4 -5.626 | opp_overlap 48175 TTGCTGGTTTAAAAA GCGCAGCCCT ATTTAA GGGGTTGCGC TTTTTTTATAGGGTA TERM 64 48200 - 48175 - fH 82 -7.5 -4.56597 | opp_overlap 48175 TTGCTGGTTTAAAAA GCGCAGCCC TATTTAAG GGGTTGCGC TTTTTTTATAGGGTA TERM 65 48935 - 48957 + G 100 -7 -5.46657 | overlap 48927 AGGATTGGTGGCCGG CGGATTATGG CCA CTATGGTCCG TTTTTTATTCGCATG TERM 66 49333 - 49312 - g 81 -6.6 -4.64766 | CGCACATTGGAAAAA CCACTTGC CGCCGT GCAAATGG GACTGATCTATGTGA TERM 67 50602 - 50589 - g 77 -6.7 -4.57569 | CGATGCTGCCAAAAA CGGTA TTTT TACCG ATAAGCCTGGTACCC CJA_0025 48661 - 50883 + | catalase/peroxidase HPI TERM 68 50908 - 50963 + T 100 -11.1 -4.88407 | opp_overlap 50937, overlap 50909 AGCGTTCTTTACTGA TGGCGCTTGCTTGCTTTTTCCCCCG AATATC CGGCGGCAGGAGTGGGTAAGCGCCG TTTTTGCTTGACTGG TERM 69 50909 - 50962 + T 88 -12.4 -3.52321 | opp_overlap 50937, overlap 50908 GCGTTCTTTACTGAT GGCGCTTGCTTGCTTTTTCCCCCG AATATC CGGCGGCAGGAGTGGGTAAGCGCC GTTTTTGCTTGACTG CJA_0026 51159 - 51040 - | hypothetical protein TERM 70 51395 - 51405 + G 81 -4.6 -5.03747 | GCGCACAATACTCAC CGCC TTT GGTG TTTTTTGGGGCATTT TERM 71 51809 - 51820 + G 70 -4.4 -4.49556 | overlap 51797 CTTGATTGGCAATAC CGTT GCCG AACG TTTGTTTAATGACGA CJA_0027 51333 - 52565 + | putative ABC transporter, permease protein CJA_0028 52577 - 53845 + | putative ABC transporter, ATP-binding protein TERM 72 54510 - 54498 - g 100 -3.3 -5.95166 | overlap 54499 54501 CTCAAGGAAAAAAAA GCAGC GCA GTTGC GCAATCAGCTTTTGG CJA_0029 54270 - 55001 + | ABC transporter, ATP-binding protein TERM 73 55772 - 55739 - g 70 -10.3 -3.13164 | gap 1 GGTTGAATTACTCAA GCGCCG-CCACCAGGT GTC ACCTGATGATCGCCGC GCAATTCGCTCATTC TERM 74 56090 - 56101 + G 83 -5.8 -5.02074 | overlap 56067 CCTCAACAGTGTCGG GGCA CAGA TGCC TTTTTTCAAAAATCC CJA_0030 55008 - 56243 + | efflux ABC transporter, permease protein CJA_0031 56240 - 57511 + | putative ABC transporter, permease protein TERM 75 58086 - 58070 - g 95 -7.3 -5.26875 | overlap 58072 GGCGCAACCAAAAAA TCGGACA AGG TGTCCAA CCTGATTCCGGCAAC TERM 76 58389 - 58401 + G 74 -3.3 -4.89063 | overlap 58383 TCCGTGCGGCAGTGA CGCTC AAT GATCG TTTATTTTTACGTGC CJA_0032 57563 - 58636 + | membrane fusion efflux protein TERM 77 58691 - 58651 - T 95 -14.8 -3.54543 | opp_overlap 58643 ATCCAGGGTTTGAAA TCGTGTGGGCCACAGCAG CTATC CTGTTGTGGCCCACAAAA ATCACTAGCGTTTAG CJA_0033 59415 - 58696 - | putative lipoprotein CJA_0034 59516 - 59412 - | hypothetical protein CJA_0035 59663 - 60580 + | MltA-interacting protein MipA superfamily TERM 78 60649 - 60680 + F 86 -9.4 -4.52589 | GCACTCCTCTTCTCA CTCCAGCGTGGG CGGATGTT CCCTTGCTGGAG TTTTCTATCAAGCCG CJA_0036 60672 - 60992 + | hypothetical protein rstA 61017 - 61715 + | response regulator (activator) in two-component regulatory system with RstB (OmpR family) TERM 79 62706 - 62696 - g 70 -6.8 -4.08064 | AACCGCGCTGCAAAA TGCC ATA GGCA ATGCAAGCCGCTATG CJA_0038 61725 - 63020 + | putative two-component regulatory system, sensor kinase protein TERM 80 63023 - 63041 + F 74 -8.2 -3.99678 | opp_overlap 63023 CACATCCTTATAAAA GTGTTTCT TAT GGAAACAC TTTAGTTGTGGCAGT TERM 81 63041 - 63023 - f 79 -7.5 -4.39426 | opp_overlap 63023 CACATCCTTATAAAA GTGTTTC TTATG GAAACAC TTTAGTTGTGGCAGT TERM 82 63255 - 63240 - f 75 -3.2 -5.19212 | gap 1, overlap 63241 63249 ACTATGATTAAAAAA CGCGACC AAG AG-CGCG TCTGAGCTCATGCTC TERM 83 63458 - 63479 + F 91 -10.9 -4.29928 | gap 1, overlap 63471 63472 63475 GCGTCGTTCTCCTTT CGCTG-CGCA TTG TGCGACAGCG TTTTCGCTATTGGTT TERM 84 63524 - 63541 + F 71 -7.7 -3.98747 | gap 1, overlap 63525 GCCCCGCAACTCATT G-CCGGCA GTA TGCCGGTC TTTGGTCATTTTTTC TERM 85 63525 - 63539 + F 82 -11.4 -3.55419 | overlap 63524 CCCCGCAACTCATTG CCGGCA GTA TGCCGG TCTTTGGTCATTTTT TERM 86 63933 - 63943 + G 74 -3.2 -4.90778 | overlap 63929 ATTTCTGTTCGTGGT CTTG GTC CAGG TTTTGTTTCAGTACA TERM 87 64377 - 64359 - g 76 -11 -3.34517 | overlap 64345 64357 ACTGGGGTTGAAACA CCAGACCC TAC GGATCTGG ACAGTTATATGTTGA TERM 88 65144 - 65158 + G 70 -5.7 -4.39166 | TGAATCTCAACATTG TCCTC AGACG GAGGA TTTTGCTATATGCCA CJA_0039 63639 - 66575 + | putative TonB dependent receptor CJA_0040 66626 - 69418 + | pectin methylesterase, putative, ce8 TERM 89 69464 - 69441 - f 91 -11 -4.33165 | opp_overlap 69441, overlap 69444 TTAAACCGATGAAAA TAGGCCGGGA TTAA TCCCGGCTTA TTTTTCATTAAAAAC TERM 90 69441 - 69464 + F 100 -13.2 -4.8622 | opp_overlap 69441 69444 TTAAACCGATGAAAA TAGGCCGGGA TTAA TCCCGGCTTA TTTTTCATTAAAAAC TERM 91 69461 - 69444 - f 79 -12.7 -2.8462 | opp_overlap 69441, overlap 69441 AACCGATGAAAATAG GCCGGGA TTAA TCCCGGC TTATTTTTCATTAAA TERM 92 72288 - 72269 - g 76 -12.2 -2.53382 | AGTAGCTCCAACTCA GAGGCTTC ATCC GAAGCCTC CAGCGAAAGCAGCTC pme8A 69515 - 72958 + | pectin methylesterase, putative, pme8A TERM 93 73004 - 72961 - f 100 -17 -3.25192 | opp_overlap 72968 72973, overlap 72963 72968 72973 GGTAACTCGATAATA TATATAAGAAAACGATCGGC AAAT GCCGGTCGTTTTCTTATAAA GTCCGAGAATAAATC TERM 94 73002 - 72963 - f 100 -19.6 -3.18832 | opp_overlap 72968 72973, overlap 72961 72968 72973 TAACTCGATAATATA TATAAGAAAACGATCGGC AAAT GCCGGTCGTTTTCTTATA AAGTCCGAGAATAAA TERM 95 72997 - 72968 - f 100 -15.1 -3.71149 | opp_overlap 72968 72973, overlap 72963 72961 72973 CGATAATATATATAA GAAAACGATCGGC AAAT GCCGGTCGTTTTC TTATAAAGTCCGAGA TERM 96 72968 - 72997 + F 100 -17.3 -3.32844 | opp_overlap 72963 72961 72968 72973, overlap 72973 CGATAATATATATAA GAAAACGATCGGC AAAT GCCGGTCGTTTTC TTATAAAGTCCGAGA TERM 97 72992 - 72973 - f 93 -9.2 -4.88495 | opp_overlap 72968 72973, overlap 72968 72963 72961 ATATATATAAGAAAA CGATCGGC AAAT GCCGGTCG TTTTCTTATAAAGTC TERM 98 72973 - 72992 + F 100 -11.4 -4.78237 | opp_overlap 72973 72968 72963 72961, overlap 72968 ATATATATAAGAAAA CGATCGGC AAAT GCCGGTCG TTTTCTTATAAAGTC TERM 99 73255 - 73240 - f 86 -9 -4.40601 | AAGGGATACAACAAA CAAGCC CAAG GGCTTG ATGCATAAGAATAAA TERM 100 73283 - 73271 - f 70 -4.8 -4.52415 | overlap 73272 73281 73282 ATGCATAAGAATAAA GGCT GGACA AGCC AACACTATCGGCATT TERM 101 75231 - 75194 - g 75 -5.1 -4.68512 | gap 1 TGACAACAAAAACAA CAATATTACG-TTCCA CCATAAT TGGTATCGTAATATTG AACAGCGCACGCCGT pel1D 73344 - 76232 + | pectate lyase, putative, pel1D TERM 102 76247 - 76277 + F 93 -15.6 -3.02202 | opp_overlap 76252, overlap 76252 GTAGTAAATCAGTTA AAAAATGCCCGGAA CAA TTCCGGGCATTTTG GTTTATATAAAAATA TERM 103 76272 - 76252 - f 100 -15.5 -5.13521 | opp_overlap 76247 76252 AAATCAGTTAAAAAA TGCCCGGAA CAA TTCCGGGCA TTTTGGTTTATATAA TERM 104 76252 - 76272 + F 100 -15.5 -4.65153 | opp_overlap 76252, overlap 76247 AAATCAGTTAAAAAA TGCCCGGAA CAA TTCCGGGCA TTTTGGTTTATATAA TERM 105 76311 - 76295 - f 70 -2.2 -5.01422 | overlap 76296 TTATATAAAAATAAA GCTGGT GTTAA ACCAGA AGATGATAAATCGGC TERM 106 77832 - 77859 + G 75 -4.8 -4.82128 | overlap 77845 GCAATCGTAAATTCT TCTTTGCTCATC AGCC GGTGAGCGGCGA TTTTGTATTTAGTGC TERM 107 79145 - 79119 - g 73 -11.6 -2.74192 | overlap 79116 CATTGGGTAATACCA CGCCTGCTGTTG AAA CAACATCAAGCG ATAGCGCAACAACAG TERM 108 80010 - 80021 + G 81 -4.4 -5.04601 | opp_overlap 80010 CTACGAGTGGAGATA TACC AGCA GGTA TTTTTGATTTATCAA TERM 109 80234 - 80220 - g 72 -5.7 -4.46267 | ATAACCCAACTAAAA CTGGA GGGGT TCCAG TGGGAACAACATCAT CJA_0043 76397 - 80326 + | pectin methylesterase, putative, ce8 TERM 110 80384 - 80339 - f 100 -22.3 -4.73297 | opp_overlap 80351, overlap 80341 80351 TAATTAATAAATAAA TATTAATAAAAATGCCCCGAC TCAG GTCGGGGCATTTTTATTAAAA AACTATAAAAAACCA TERM 111 80382 - 80341 - f 100 -24.9 -3.95676 | opp_overlap 80351, overlap 80339 80351 ATTAATAAATAAATA TTAATAAAAATGCCCCGAC TCAG GTCGGGGCATTTTTATTAA AAAACTATAAAAAAC TERM 112 80351 - 80372 + F 100 -15.9 -5.06414 | opp_overlap 80341 80339 80351 AAATATTAATAAAAA TGCCCCGAC TCAG GTCGGGGCA TTTTTATTAAAAAAC TERM 113 80372 - 80351 - f 100 -15.9 -5.20606 | opp_overlap 80351, overlap 80341 80339 AAATATTAATAAAAA TGCCCCGAC TCAG GTCGGGGCA TTTTTATTAAAAAAC TERM 114 82165 - 82177 + G 70 -4.1 -4.68724 | CCCTGGATGGTCGTA TGAGC AAG GCTTA TTTTATGTTCAGTGG pel1C 80421 - 83069 + | pectate lyase, putative, pel1C TERM 115 83080 - 83115 + F 74 -5.4 -4.66163 | overlap 83083 AATAAAATGAGATAG CGTGCAATGGTGCAAA AGGA TTTGCCCTGTTGCCTG TTTTTACGTAACAAT TERM 116 83278 - 83268 - f 72 -2.6 -5.00616 | opp_overlap 83268 TGGTTCGGCAAAAAA TAAT TCA ATTA TTATTTATCCCGGTC pel1F 83436 - 85286 + | pectate lyase, putative, pel1F TERM 117 85294 - 85314 + F 93 -9.7 -4.70169 | GCTTATAGTGGTTGG GCCGACATG AAA TGTGTCGGC TTTTATTACATGTCC TERM 118 85323 - 85351 + F 81 -12.5 -3.15861 | opp_overlap 85325 TGTCGGCTTTTATTA CATGTCCCTCGTT AAC GGCGAGGGATATG TTGATAAAAGTGCTC TERM 119 85752 - 85734 - f 95 -11.7 -4.02022 | opp_overlap 85734 TGGAATCACCAGAAA CCCCCTG TAACC CAGGGGG TTTTTTATTGTCCAT TERM 120 85734 - 85752 + F 100 -11.7 -5.56673 | opp_overlap 85734 TGGAATCACCAGAAA CCCCCTG TAACC CAGGGGG TTTTTTATTGTCCAT TERM 121 85993 - 86009 + F 81 -3.5 -5.40072 | overlap 85994 85995 CTGACTCGTCGCTCC AACCGGC GTC GCCGGCC TTTTTTTACCGACCC TERM 122 85995 - 86007 + F 72 -10.5 -2.89655 | overlap 85994 85993 GACTCGTCGCTCCAA CCGGC GTC GCCGG CCTTTTTTTACCGAC TERM 123 86296 - 86326 + G 88 -12.6 -3.57263 | opp_overlap 86301, overlap 86297 AGGTGTTCTTTTTCC ACCAACCCTGGTTG CCG CAACTGGGGTTGGA TTTAAGCCTGCGCCT TERM 124 86297 - 86325 + G 100 -16.1 -2.74144 | opp_overlap 86301, overlap 86296 GGTGTTCTTTTTCCA CCAACCCTGGTTG CCG CAACTGGGGTTGG ATTTAAGCCTGCGCC TERM 125 87259 - 87280 + G 80 -5.7 -5.00616 | overlap 87245 CGGCCTCGGCCATGG CCGGTGTGC CTCT GCTCAACGG TTTTTTAAGCAAGGA CJA_0046 86121 - 88946 + | NADH dehydrogenase subunit 5 CJA_0047 88946 - 89320 + | pH adaptation potassium efflux system C transmembrane protein TERM 126 89574 - 89586 + G 91 -9.1 -4.60041 | overlap 89567 CATGCTACTGGTGAC CGCCA TTC TGGCG TTTTTCAGCCTGGCT TERM 127 89812 - 89829 + G 71 -3.3 -4.87291 | gap 1, overlap 89814 89814 TATGTGGTGATCAAC CTG-GCCG GTT CGGCGCTG TTTTTGATTGCCGTA TERM 128 90416 - 90445 + G 70 -6.3 -4.25873 | gap 1, overlap 90428 TCACCCGGGGGCCGC GCCTGCGCCAACCG GCA CTGCTGG-GCGGGC TGTTTTTTGTGGGGG TERM 129 90428 - 90447 + G 84 -4.2 -5.24531 | gap 1, overlap 90416 CGCGCCTGCGCCAAC CGGCACTGC TGG GCGG-GCTG TTTTTTGTGGGGGCT TERM 130 90481 - 90494 + G 70 -5.2 -4.37092 | AGTGTGATCGGCCTG CCGC CCCTCA GCGG TTTTATCGGCAAGCT CJA_0048 89317 - 90825 + | PhaD protein TERM 131 91368 - 91351 - g 71 -9.1 -3.53563 | ATAGTCGCGTTGAAA CAGCGCT ACGA AGCGCCG CTTAAGGAGGTATTT CJA_0049 90859 - 91404 + | PhaE protein CJA_0050 91386 - 91655 + | PhaF protein TERM 132 91703 - 91718 + G 77 -10.4 -3.62096 | CATTGCGTTTTTCCT GCTGGC CGGT GCCAGC TTTGCCCTGATCGGC TERM 133 91809 - 91795 - g 73 -11.4 -2.64155 | opp_overlap 91792 91793 91783, overlap 91792 91791 GCCCCGCCAAAGCCA CCACCC TGG GGGTGG GCGGTGTCATTATCG TERM 134 91819 - 91833 + G 77 -2.8 -5.07652 | overlap 91783 GGGTGGGCGGTGTCA TTATCG GTT CGGTGA TTTTCTTTTCCACCC CJA_0051 91665 - 91994 + | pH adaptation potassium efflux system protein G TERM 135 92031 - 92048 + T 100 -9.8 -5.47159 | opp_overlap 92028 CCGTTATAAGATGCA GGCGGG TTCTTT CCCGCC TTTTTTGTGTTGGGC cadA-1 94611 - 92074 - | cadmium translocating P-type ATPase TERM 136 92254 - 92241 - G 78 -5.3 -4.84359 | CCAGGCTGACAAAAA CATTC TGGC GAATG ATGGTGCGGGTACGG TERM 137 93001 - 93023 + g 81 -8.3 -4.36914 | TTCGGTAATACGCGG CCGGCCCTC AGTGA GGGTGCCGG TTTTATCGAACGCCA TERM 138 93812 - 93760 - G 74 -2.4 -5.07486 | gap 2, opp_overlap 93798, overlap 93763 93766 93768 CAGGCTGAATAAAAA CAACAACAGGGCGCCCTCGGCCCAGG CGC CCAGGGCGGCGG-CACCC-GCGGCAG CTACCAGCATCAGGG TERM 139 93809 - 93763 - G 72 -4.9 -4.63592 | gap 2, opp_overlap 93798, overlap 93760 93766 93768 GCTGAATAAAAACAA CAACAGGGCGCCCTCGGCCCAGG CGC CCAGGGCGGCGG-CACCC-GCGG CAGCTACCAGCATCA TERM 140 93792 - 93766 - G 81 -8.6 -4.40123 | overlap 93763 93760 93768 GAATAAAAACAACAA CAGGGCGCCC TCGGCCC AGGCGCCCAG GGCGGCGGCACCCGC TERM 141 93805 - 93768 - G 84 -11.1 -3.7581 | gap 1, opp_overlap 93798, overlap 93766 93763 93760 ATAAAAACAACAACA GGGCGCCCTCGGCCCAGG CGC CCAGGGCGGCGG-CACCC GCGGCAGCTACCAGC TERM 142 93941 - 93951 + g 81 -6.8 -4.65895 | overlap 93936 ACCCAAAAGGGGGCG CTGG CGA CCAG TTTTTCAATGGCAAA TERM 143 94062 - 94074 + g 72 -7.7 -4.00038 | overlap 94059 94058 TATGTTGGCTATCAG CACCA TGC TGGTG TTTATGCTCATGCTC TERM 144 95049 - 95060 + G 74 -5.8 -4.4715 | opp_overlap 95049, overlap 95030 95029 TGGGTTCTTTACTAA GTGC CAGC GCAC TTTTATCCCTTCCAC pel1E 95000 - 97042 + | pectate lyase, putative, pel1E TERM 145 97126 - 97068 - T 100 -17.7 -2.50816 | opp_overlap 97070 97085, overlap 97085 GCTTCAGGGATGAAG TGGGCATCCATAAAAAACGCCTTTGTG GTTTT CACAAAGGCGTTTTTTATGGAAGGCTT ATTTATCTGCCGGAT TERM 146 97070 - 97124 + T 100 -25.4 -4.14627 | opp_overlap 97068 97085, overlap 97085 TTCAGGGATGAAGTG GGCATCCATAAAAAACGCCTTTGTGG TTT TCACAAAGGCGTTTTTTATGGAAGGC TTATTTATCTGCCGG TERM 147 97109 - 97085 - T 100 -14.4 -5.28176 | opp_overlap 97070 97085, overlap 97068 GGCATCCATAAAAAA CGCCTTTGTG GTTTT CACAAAGGCG TTTTTTATGGAAGGC TERM 148 97085 - 97109 + T 100 -15.1 -5.24129 | opp_overlap 97085 97068, overlap 97070 GGCATCCATAAAAAA CGCCTTTGTGG TTT TCACAAAGGCG TTTTTTATGGAAGGC uvs118 97890 - 97165 - | Uvs118 uvs117 98589 - 97906 - | Uvs117 TERM 149 98366 - 98350 - G 73 -9.4 -3.6284 | opp_overlap 98311 AACCACGAGGGTAAA GCCTGC TTTAT GCAGGC GTGCAATAGCCTCAA glyS 100719 - 98641 - | glycyl-tRNA synthetase, beta subunit TERM 150 98874 - 98884 + g 71 -3.2 -4.87786 | CTTTGGCGCCCACGG CTTG AGC CAGG TTTTTCTCGGCTTCC glyQ 101690 - 100719 - | glycyl-tRNA synthetase, alpha subunit uvs112 101967 - 102533 + | Uvs112 TERM 151 102543 - 102578 + T 83 -9 -4.20136 | overlap 102544 CACTAGCCGGTTTTT GCCAGGCCATGAGC TTTGCCCT GCTAATGGCCTGGG TTTGCTTTTAGGGCT TERM 152 102544 - 102577 + T 80 -12.5 -3.11359 | overlap 102543 ACTAGCCGGTTTTTG CCAGGCCATGAGC TTTGCCCT GCTAATGGCCTGG GTTTGCTTTTAGGGC TERM 153 102619 - 102638 + T 100 -13.6 -5.34555 | TAGTCCTGTCGTTTA GGCCGATC TTAT GATCGGCC TTTTTTATGGTGTGC CJA_0059 103408 - 102734 - | hypothetical protein TERM 154 103259 - 103247 - G 82 -3.3 -5.30616 | CGAGCGAAACAAAAA CAGGG CAT CACTG GAGCGGGCCGCCTTG uvs111 103538 - 104446 + | Uvs111 TERM 155 104564 - 104551 - f 74 -5.9 -4.63486 | overlap 104555 AGTGCGTTAATAAAA GGCAG GGCT CCGCC GGGTGATAACACCTG TERM 156 104923 - 104902 - g 72 -7.3 -4.18018 | opp_overlap 104886 104903 104907, overlap 104903 104907 CCGCGTGATTGAAAA GCAAACCAC CCGG GTGGTTTGT CCTTCGCCGGTATCC TERM 157 104903 - 104922 + G 70 -10.8 -2.72049 | opp_overlap 104903 104902 104907, overlap 104886 104907 CGCGTGATTGAAAAG CAAACCAC CCGG GTGGTTTG TCCTTCGCCGGTATC TERM 158 104922 - 104903 - g 72 -10.8 -3.10597 | opp_overlap 104886 104903 104907, overlap 104902 104907 CGCGTGATTGAAAAG CAAACCAC CCGG GTGGTTTG TCCTTCGCCGGTATC TERM 159 104918 - 104907 - g 70 -5.8 -4.21922 | opp_overlap 104886 104903 104907, overlap 104903 104902 TGATTGAAAAGCAAA CCAC CCGG GTGG TTTGTCCTTCGCCGG uvs110 104630 - 105430 + | Uvs110 TERM 160 105651 - 105626 - g 72 -11.7 -2.53263 | TCGATTTCGAAGCGA CCGGCGAGCCG GTCA CGGCGCGCCTG GGCCTGCCGGATAAT TERM 161 106087 - 106062 - g 95 -12.5 -4.09459 | opp_overlap 106083 106085, overlap 106054 GGAAAAACTGATAAA CCAGGCGGGCA TTCC TGCGCGCCCGG CCCTGGGGTTGTATT CJA_0062 105463 - 107013 + | Gonadoliberin III-related protein CJA_0063 107010 - 108023 + | alpha-L-glutamate ligase homolog TERM 162 108176 - 108198 + G 74 -6.3 -4.49311 | gap 1, overlap 108173 108172 TCATGTTAAGTGGGA GCCTCTCCGT ATTT GCGGA-AGGC TTTTATACTGCTGCT TERM 163 108571 - 108560 - g 77 -5.8 -4.59376 | opp_overlap 108566 ATGACGAAACCAAAA CCAG GGCA CTGG TGGGTATCGGTGTAC CJA_0064 108133 - 108696 + | putative OmpA-like transmembrane domain CJA_0065 108696 - 108971 + | hypothetical protein TERM 164 109990 - 109973 - g 70 -4.8 -4.55128 | ATTGGCAAACTAAAA CCCGGT GGCAGT ACCGAG CAGGAATTGCAGGCG gt4G 109049 - 110407 + | glycosyl transferase, putative, gt4G CJA_0067 110394 - 111143 + | Cyclopropane-fatty-acyl-phospholipid synthase TERM 165 112098 - 112080 - g 79 -4.5 -5.00616 | opp_overlap 112085, overlap 112081 GGCCGCGCGAAAAAA CCACCTG GACCG CAGGTGC CATCTTGCTCGCCGC CJA_0068 111140 - 112210 + | hypothetical protein TERM 166 112777 - 112765 - g 88 -5.5 -5.24129 | CCCGCCGACAAAAAA CCGCA CAG TGCAG CCTTGCTGATTGGCC CJA_0070 112213 - 112938 + | conserved hypothetical protein TIGR00046 CJA_0069 113285 - 112935 - | peptidyl-prolyl cis-trans isomerase, FKBP-type TERM 167 113348 - 113325 - R 100 -15.4 -5.31059 | opp_overlap 113328 AGATGAACTAAAAAA CCATCCTGCA CCAG TGCAGGATGG TTAGGGAGATAAGGT CJA_0071 113981 - 113367 - | putative lipoprotein TERM 168 113751 - 113766 + g 77 -3.2 -5.08601 | CAACTCTGCTGCGGT GCGGAT GGCG ATCAGC TTTTTATTGAGGTCA TERM 169 113943 - 113928 - G 70 -4.6 -4.47707 | opp_overlap 113933, overlap 113929 113930 TTGCAGTAAAAAGAA CGCTGC CAGG GCAGCC GCGCTGAGCAGGTTG CJA_0072 114498 - 114019 - | hypothetical protein cheB 115419 - 114520 - | protein-glutamate methylesterase CheB TERM 170 115371 - 115336 - G 91 -12.6 -3.81146 | gap 1, opp_overlap 115337 115338 GGTTTTAATCAATAA CTGGCAGCACAG-CTGG TGA CCGGACTGTGCCACCAG CTGTGCCAGCGCCTG pilL 122449 - 115439 - | type IV pili sensor histidine kinase/response regulator PilL TERM 171 117462 - 117478 + g 72 -8.7 -3.83026 | overlap 117463 TGCTCGCGGGTATTG TCCACGA CAA TCGTGGG TTTGCTGTAACCGGG TERM 172 119260 - 119243 - G 72 -6.9 -4.17556 | CATATGCGCAATAAA CTGCTGG ACTA CCTGCAG ATGGTAGAGCGCCTC TERM 173 120361 - 120381 + g 72 -9.7 -3.32022 | TCTGCTCTTCAGTTT CCAGCGATG TGT CATGGCTGG TTGCTATGTCCCAGG TERM 174 120744 - 120765 + g 75 -7.2 -4.30719 | CTGGTCTTGGCAACG GCGTAGCC CAGGGT GGCGACGC TTTCTTCTGCCACAC TERM 175 121527 - 121550 + g 72 -10.4 -3.40299 | gap 1 TCGCCCGCTTCTTTG CCTTCGAGCAG CGC CTGCTC-AAGG TTATAGGTGTCGTAA TERM 176 121714 - 121730 + g 70 -4.3 -4.56597 | TTTTGATTTCCTTGT CCAGTTG GCG CAGCAGG TTTTTCACCGCCACG pilK 123382 - 122459 - | type IV pili chemotactic methyltransferase PilK TERM 177 122672 - 122653 - G 84 -3.5 -5.24129 | overlap 122654 GGTTTTGACAAAAAA TCACGTC CACTTT GACGTGT GGCAGCTGGCGTGCA TERM 178 123429 - 123388 - R 76 -11.6 -2.74334 | gap 2, opp_overlap 123388 123413, overlap 123387 123427 GCAAAGACAATCAAT CCCTGGCGTCCCGGGCCAGC AACA GCCGGCC-GGGATAC-AGGG CGGTTATCAGGCCCG pilJ 125601 - 123436 - | twitching motility protein PilJ TERM 179 125616 - 125626 + r 82 -3.2 -5.55001 | TCTAAGCACTCCTAA CCAG CAT TTGG TTTTATTTTTTCTTC pilI 126282 - 125707 - | Protein pilI TERM 180 125840 - 125809 - G 91 -12.4 -3.85698 | gap 1, opp_overlap 125808 125810, overlap 125810 GCTCCCGGTGACAAA CGGCAGGATACTGTC GGC GACAGTA-CCTGCCT CTTCACTGTATTCAT TERM 181 125839 - 125810 - G 95 -15.9 -2.91276 | gap 1, opp_overlap 125808 125810, overlap 125809 CTCCCGGTGACAAAC GGCAGGATACTGTC GGC GACAGTA-CCTGCC TCTTCACTGTATTCA TERM 182 125810 - 125839 + g 100 -15.9 -3.15583 | gap 1, opp_overlap 125810 125809, overlap 125808 CTCCCGGTGACAAAC GGCAGGATACTGTC GGC GACAGTA-CCTGCC TCTTCACTGTATTCA TERM 183 126165 - 126133 - G 93 -10.6 -4.3208 | gap 1, overlap 126161 GCCCATAAGCGAAAA GCCGATAC-CGCTCC ACTG GGGGCGAATATCGGC TTGGGCCGGCAGACC TERM 184 126267 - 126316 + g 100 -17.9 -4.84311 | gap 1, overlap 126270 126272 126273 GCAGTTGTATCCTAA CGGT-CCCGCCCGGCAAGCCTGGG ATT CTCAGGCTTGCCGGGCGCTTATTG TTTTATTCTCTCGCA TERM 185 126270 - 126313 + g 100 -18.2 -4.51787 | gap 1, overlap 126267 126272 126273 GTTGTATCCTAACGG T-CCCGCCCGGCAAGCCTGGG ATT CTCAGGCTTGCCGGGCGCTTA TTGTTTTATTCTCTC TERM 186 126272 - 126310 + g 100 -26.8 -4.33214 | overlap 126270 126267 126273 TGTATCCTAACGGTC CCGCCCGGCAAGCCTGGG ATT CTCAGGCTTGCCGGGCGC TTATTGTTTTATTCT TERM 187 126273 - 126309 + g 100 -30.3 -3.17488 | overlap 126272 126270 126267 GTATCCTAACGGTCC CGCCCGGCAAGCCTGGG ATT CTCAGGCTTGCCGGGCG CTTATTGTTTTATTC pilH 126734 - 126372 - | twitching motility protein PilH CJA_0079 126856 - 126719 - | hypothetical protein pilG 127259 - 126864 - | twitching motility protein PilG - Pseudomonas aeruginosa TERM 188 127470 - 127484 + H 85 -3.6 -5.57054 | AACTAGTTGAATATA TGAGTA ATC TATTCA TTTTTTTAAGTTATT gshB 127605 - 128558 + | glutathione synthase CJA_0082 128581 - 129480 + | TonB family C-terminal domain protein CJA_0083 129498 - 130142 + | Uncharacterized ACR TERM 189 130132 - 130120 - f 70 -9.1 -3.36671 | ATGTCAACCTGATAA CCAGC ACT GCTGG TCACGCCTGATCCAT CJA_0084 130146 - 130577 + | conserved hypothetical protein TIGR00250 CJA_0085 130915 - 130589 - | Domain of unknown function (DUF1508) family pilU 132093 - 130948 - | twitching motility protein PilU TERM 190 131499 - 131521 + g 72 -5.4 -4.56597 | opp_overlap 131501, overlap 131501 131502 CGCCGATCAGGATCA CATCCGGCGC CTG GCGCAGGGTA TTTTTCAGGGCGACC TERM 191 131501 - 131519 + g 72 -8 -3.90048 | opp_overlap 131501, overlap 131499 131502 CCGATCAGGATCACA TCCGGCGC CTG GCGCAGGG TATTTTTCAGGGCGA pilT 133149 - 132115 - | twitching motility protein TERM 192 132149 - 132161 + gH 71 -10.5 -2.70932 | TTGGCTTTGGTTTTT GCCGC TTC GCGGC TGATTACCCGGCGCG TERM 193 132796 - 132779 - GH 86 -10.5 -3.95022 | GTGACCAATACCAAA CCGCGCG GAAC CGCGCAG ATATCGCGGAACACA TERM 194 132882 - 132865 - GH 73 -10.5 -3.07994 | opp_overlap 132864 132861 132865, overlap 132867 GGGAATGGTACGGAA CACGGCG CCGG CGCCGCG GTTCTGGTTAAAGGC TERM 195 132880 - 132867 - GH 70 -9.5 -3.09803 | opp_overlap 132865 132864 132861, overlap 132865 GAATGGTACGGAACA CGGCG CCGG CGCCG CGGTTCTGGTTAAAG TERM 196 133172 - 133184 + GH 86 -9.1 -4.42062 | ACCTTTTGTTATCGC TCGGC GGC GCCGA TTTGTTTGAAGAGTC CJA_0088 133093 - 133899 + | conserved hypothetical protein TIGR00044 TERM 197 134215 - 134183 - g 70 -6.3 -4.17762 | gap 1 CAGGTGTTAAAAGAA GTGGCGCTTGCACT CAAGCC AGCGCTAG-GCCAC AAACCCTTGTTGATT proC 133949 - 134770 + | pyrroline-5-carboxylate reductase CJA_0090 134794 - 135375 + | YGGT family protein CJA_0091 135376 - 135681 + | conserved hypothetical protein TIGR00251 TERM 198 135922 - 135877 - g 73 -9.2 -3.57144 | gap 3, opp_overlap 135914, overlap 135881 CTCTCCACCGTCAAA TG-AACCACTACAACC-GCTGGC GCC GCCAGCTGGATG-AGCGGTTGCA ACGCTTTGAGGCCTG TERM 199 135917 - 135881 - g 74 -10.2 -3.52204 | opp_overlap 135914, overlap 135877 CCACCGTCAAATGAA CCACTACAACC-GCTGGC GCC GCCAGCTGGATG-AGCGG TTGCAACGCTTTGAG CJA_0092 135849 - 137870 + | hypothetical protein CJA_0093 138107 - 137928 - | Tetraacyldisaccharide-1-P 4-kinase CJA_0094 138639 - 138199 - | Excinuclease ATPase subunit TERM 200 138393 - 138380 - G 79 -2.3 -5.24531 | opp_overlap 138369 ATGGCCGATAAAAAA GCCCA CTCG CAGGC TTGCTTGTCGGATTT CJA_0095 139108 - 138686 - | hypothetical protein CJA_0096 139923 - 139105 - | hypothetical protein TERM 201 139785 - 139800 + g 70 -4.6 -4.55887 | overlap 139787 GGCGGCGCTCATTGG CGGGCA ACAA TGCCGG TTTGTATTTTTCCAG TERM 202 139961 - 139943 - R 72 -10.2 -2.82623 | overlap 139940 GGCTCCCTAGAATCA GGCTGCAG TTA CTGCCGCC AAAACCGAACGAATT CJA_0097 141107 - 139923 - | Beta-ketoacyl synthase TERM 203 139985 - 140002 + gr 73 -9.1 -3.62518 | gap 1, opp_overlap 139985 ACGAATTGCTTAATA CCCGCGCC ACC GG-GCGGG TTTCAGGGTGTTTGA TERM 204 140376 - 140398 + gr 76 -4.1 -5.00616 | gap 1, overlap 140378 CTCGCCATAGCCGAG CAGGC-ACAG GTTG CTGTCGCCGG TTTTTTCCAGGAGCG TERM 205 140823 - 140795 - GR 100 -9.5 -4.87665 | overlap 140797 TGGTACCGATAAAAA TACCCACCCTGGC AGC GCCATAGCGGGCA ATGGCTGACTGGGCC TERM 206 140821 - 140797 - GR 83 -9.9 -4.06182 | overlap 140795 GTACCGATAAAAATA CCCACCCTGGC AGC GCCATAGCGGG CAATGGCTGACTGGG CJA_0098 141999 - 141070 - | acyltransferase pigH 143675 - 142293 - | AMP-ligase TERM 207 142902 - 142886 - G 78 -9.3 -3.90744 | overlap 142887 CTGTGGCTGAAATAA TCCCGGC AAG GCCGGGC ATATCCAGGCCCGCA TERM 208 142901 - 142887 - G 78 -12.8 -2.94232 | overlap 142886 TGTGGCTGAAATAAT CCCGGC AAG GCCGGG CATATCCAGGCCCGC TERM 209 143510 - 143500 - G 93 -8.2 -4.79451 | overlap 143502 AGGTTAAATACAAAA CCGG CAT CCGG CAGATGGGCGGCTAC CJA_0100 144295 - 143687 - | ketosynthase TERM 210 144225 - 144212 - G 70 -5.9 -4.15703 | overlap 144213 CGCGATAAACAATAA CGGCG GCAT CGCCA ATACCAGTGACAGGT acpC 144566 - 144288 - | acyl carrier protein TERM 211 144593 - 144609 + r 80 -9.5 -3.85698 | ATTTCATTGGCGGCA TTGCTTG TAA CAAGCAA TTTCTCCCGGGGACA CJA_0102 145406 - 144645 - | ubiquinone/menaquinone biosynthesis methlytransferase UbiE CJA_0103 145488 - 145616 + | hypothetical protein TERM 212 145816 - 145831 + G 70 -6 -4.2558 | overlap 145817 TGGCTGTGGCCGGGG GCCCGG TTAC CCGGGG TTTTGGTGAGCAATG fkbO 145623 - 146621 + | FkbO protein TERM 213 147125 - 147145 + G 72 -8.9 -3.72695 | opp_overlap 147117 GAAGGCACCCGTACC CGACCGGGG ACG CCCTTGTCG TTTCATCGCGGCCCT CJA_0105 146603 - 147406 + | acyltransferase family protein CJA_0106 147983 - 147441 - | hypothetical protein CJA_0107 148048 - 148890 + | hypothetical protein CJA_0108 148992 - 149363 + | acyl carrier protein TERM 214 149660 - 149677 + G 75 -5.5 -4.62168 | CATGATGCGGAGGCG GCGACAG TGGA CTTTCGC TTTTATCGTTTGGCT CJA_0109 149390 - 149788 + | AMP-binding enzyme family protein gt2J 149799 - 150551 + | glycosyl transferase, putative, gt2J CJA_0111 150572 - 150994 + | 4-hydroxybenzoyl-CoA thioesterase domain protein TERM 215 151608 - 151643 + G 70 -3.8 -4.72272 | TTCAGCAACCAACAA CCGGCAACGGAACCTA CTGC TGGGGACTGTCGCTGG TTTTTCCTGCCACCA CJA_0112 150996 - 151694 + | hypothetical protein TERM 216 151695 - 151715 + F 81 -8.3 -4.38712 | GCCAACCAACCTTGA GGCGTGTAG GGA CTATATGCC TTTTGTGACCGTACC TERM 217 152148 - 152160 + G 70 -6.2 -4.22369 | opp_overlap 152115, overlap 152146 CCCGCTGTTGGGACA GGCC CAGGC GGCC TTGTTTGGTTTTAAT CJA_0113 151711 - 154167 + | hypothetical protein TERM 218 154459 - 154482 + G 72 -8.2 -3.72893 | overlap 154468 154475 GCGCCACCTATCCCA TCCGGCAA CCCGGCAA TTGCCGGA TTTACTACAAGCCTG CJA_0114 154160 - 154753 + | hypothetical protein TERM 219 154997 - 155012 + G 74 -2.5 -5.06414 | overlap 154992 GCGCCAGGAGGGTGA GCCGA TTCGCC TTGGC TTTTTGTTGGGGACA CJA_0115 154761 - 155249 + | hypothetical protein CJA_0116 155252 - 155980 + | putative 3-oxoacyl-(acyl-carrier-protein) reductase fabF-2 155980 - 157212 + | 3-oxoacyl-(acyl-carrier-protein) synthase II TERM 220 157202 - 157221 + F 93 -10.6 -4.63218 | TGATTTTCAAACGTT GGCCCGCC TGAT GGAGGGCC TTTTATTGCACAAGG CJA_0118 157248 - 157991 + | hypothetical protein TERM 221 158032 - 158012 - f 100 -13.3 -4.58283 | opp_overlap 158012 CAATCCGTGGAAAAA GCCGGGTCT GCA AAACCCGGC TTTTTTATTTCCCAT TERM 222 158012 - 158032 + F 100 -11.1 -5.64421 | opp_overlap 158012 CAATCCGTGGAAAAA GCCGGGTCT GCA AAACCCGGC TTTTTTATTTCCCAT TERM 223 158949 - 158969 + G 79 -9.7 -3.73402 | TATTTGCGCTACCAG GGTGACAGC TTT GCTGTCAGC TTTGATGCCAACTCT metX 158133 - 159275 + | homoserine O-acetyltransferase metW 159280 - 159867 + | methionine biosynthesis protein MetW CJA_0121 159881 - 160336 + | hypothetical protein TERM 224 160689 - 160677 - g 74 -10.5 -3.14602 | opp_overlap 160687, overlap 160675 TGTACCCGAGCAAGA GCGCG GGG CGCGC TACCATGCGGTGTTG TERM 225 160695 - 160738 + G 95 -11.3 -4.36914 | gap 3, overlap 160687 160698 CGGGGCGCGCTACCA TGCGGTGTTGGCGTTTATGCGC CAC GCGCA-AGAC-CCAACACC-CA TTTTATGCCACGGCG TERM 226 160698 - 160736 + G 84 -14.1 -2.52946 | gap 2, overlap 160687 160695 GGCGCGCTACCATGC GGTGTTGGCGTTTATGCGC CAC GCGCA-AGAC-CCAACACC CATTTTATGCCACGG TERM 227 160889 - 160872 - g 100 -3.3 -5.66989 | overlap 160873 CAAAGACGAAAAAAA CCGCATT AGCC ATCGCGG CAAAGCGATGCAGGA rdgB 160339 - 160941 + | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family CJA_0123 160941 - 162122 + | putative oxygen-independent coproporphyrinogen III oxidase CJA_0124 162194 - 164035 + | hypothetical protein TERM 228 164718 - 164739 + G 72 -4.4 -4.63048 | gap 1, overlap 164720 164721 TTCTTGCGCGAGGAG CAG-GCCGG CAATT CCGGCATTG TTTATTGTTTGTCGC TERM 229 165277 - 165307 + G 85 -9.7 -4.25104 | AGGCGGTACAAATGG CCCTGTCCTGTGT TTATC GCACAGGGCAGCG TTTTGGTGCCGGGCA TERM 230 165677 - 165689 + G 78 -10.5 -3.47868 | opp_overlap 165674 165677, overlap 165675 165675 TTTGGCAGAAGAGCA GGGGG TTC CCCCC TATGTTATTTTTCAC TERM 231 165689 - 165677 - g 70 -10.5 -2.80074 | opp_overlap 165677 165675 165675, overlap 165674 TTTGGCAGAAGAGCA GGGGG TTC CCCCC TATGTTATTTTTCAC recQ 164022 - 165848 + | ATP-dependent DNA helicase RecQ CJA_0126 166129 - 166605 + | hypothetical protein TERM 232 166595 - 166583 - f 72 -9.1 -3.53012 | opp_overlap 166588 166591 CCGCGCCTTGGGAAA TCCGC TTT GCGGA ACGCCGCTAATTTAT TERM 233 174150 - 174165 + G 73 -9 -3.64703 | opp_overlap 174138 CAACGGCCTCGGCGG CCAGGT GCAC ACCTGG TTTCACTACACCGGC TERM 234 174900 - 174877 - g 72 -7.4 -3.87994 | opp_overlap 174886 AGCGATCTCGATAAA GGTATCTACC CGGA GGCAGTTACC AATGCTGCCGGTCAT TERM 235 176231 - 176202 - g 76 -10.7 -3.28912 | gap 1 CTACACCGACAGCAA CGGCCGCCTGGCCA GTA TCACCAG-CGGCCG GTTAACGGCCAGCAA TERM 236 177806 - 177816 + G 72 -5.4 -4.58395 | CCGCAGACTTATCTG GTAG ACA CTAC TTTTTACGAGCTGAC CJA_0127 166720 - 177969 + | RHS Repeat family TERM 237 178222 - 178241 + T 72 -5.8 -4.40298 | opp_overlap 178222 GAAAACGAGAGTTAA GTTTTGTT GTGG AACAAAGC TTTATTGATTTGAAT CJA_0128 179771 - 178821 - | Integrase core domain protein TERM 238 180494 - 180465 - g 76 -10.7 -3.28912 | gap 1 CTACACCGACAGCAA CGGCCGCCTGGCCA GTA TCACCAG-CGGCCG GTTAACGGCCAGCAA CJA_0129 179794 - 181146 + | cytoplasmic membrane protein CJA_0130 181215 - 181529 + | IS66 family element, Orf1 protein TERM 239 181557 - 181575 + G 77 -8.8 -4.09864 | overlap 181572 ATGTGCCGGTATACG TACACCGG CAA CCGGTGGA TTTTCGCAAATCCAT CJA_0131 181526 - 181876 + | IS66 family element, Orf2 protein TERM 240 182905 - 182895 - g 95 -6.8 -5.40474 | opp_overlap 182894 182895 ACCTTGTGAAAAAAA GGGT ATT ACCC ATTTAGCCTGTTGGG TERM 241 183440 - 183422 - g 72 -10.3 -3.36968 | opp_overlap 183421 183422 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_0132 181909 - 183477 + | IS66 family element, transposase TERM 242 183689 - 183668 - g 72 -4.3 -4.62783 | opp_overlap 183668 TATCCAGTGGAAAAA CCACCTATG TCAT CAACGGTGG TGCTTACGAAGAGAT CJA_0133 183532 - 184044 + | Rhs family protein CJA_0134 184053 - 184817 + | Rhs family protein TERM 243 184891 - 184940 + T 100 -11.1 -5.25893 | gap 2, opp_overlap 184904, overlap 184901 CTATTCTTACTTGTC GTAT-G-CATCAGAAGCACCGTT CAACAA AACGGTGCTTCTGATTACGATAC TTTTTTCCTATGTGT TERM 244 184901 - 184928 + T 86 -14.3 -2.74756 | opp_overlap 184904, overlap 184891 TTGTCGTATGCATCA GAAGCACCGTT CAACAA AACGGTGCTTC TGATTACGATACTTT TERM 245 184925 - 184904 - T 79 -10.9 -3.4252 | opp_overlap 184901 184891 TCGTATGCATCAGAA GCACCGTTC AACA AAACGGTGC TTCTGATTACGATAC CJA_0135 185630 - 185163 - | hypothetical protein TERM 246 185314 - 185327 + g 79 -4.5 -4.92757 | ATAAGGTGATTCCAG GGGCT CTTA AGCTC TTTTGTTATTGCTAG TERM 247 185649 - 185675 + r 100 -8.1 -5.76633 | opp_overlap 185649 ATGGTTGATTGAAAA CTGGCATTTTT AAAAC ATAAATGCCAG TTTTTTTATATCTCA TERM 248 185675 - 185649 - R 79 -8.8 -4.18197 | opp_overlap 185649 ATGGTTGATTGAAAA CTGGCATTTTTA AAA CATAAATGCCAG TTTTTTTATATCTCA TERM 249 185734 - 185708 - R 88 -12.5 -3.63515 | TCTTATCCTCAACAA GTTTTTGACAG GATGG CTGTCAAAAAC GGCCTGCCATTCCCA TERM 250 186002 - 185983 - R 70 -9.3 -3.3782 | opp_overlap 186000 TATTTATGTAACTAA GCGTGAC ACAATG GTCACGC TCGCATTTGGCGGGA TERM 251 186597 - 186578 - R 100 -13.6 -5.06414 | CTGCGCTAACAAAAA GGCCAGCA TTGC TGCTGGCC CTGGAAGTCTATAAC CJA_0136 188567 - 186606 - | phospholipase/carboxylesterase TERM 252 187339 - 187361 + g 70 -4 -4.61482 | overlap 187339 TCAAGTGCCAGGCCA TCGCGCGCCT TGT AGGTGCGGAA TTCTTTTTTAACCAG CJA_0137 188809 - 189141 + | Peptidase propeptide and YPEB domain protein CJA_0138 189162 - 189479 + | Peptidase propeptide and YPEB domain protein TERM 253 189584 - 189598 + G 77 -11.4 -3.14683 | GCCGATGGTCGCGAC GCCCTG CAC CAGGGC TTGATAGAGCCCTAT CJA_0139 189479 - 190144 + | DNA-binding response regulator TERM 254 190350 - 190364 + G 72 -5.6 -4.57073 | overlap 190348 GCGCCGCCTGGCACC GGCCTA CGA TCGGCC TTTTTCCGGCCAGTA CJA_0140 190141 - 191481 + | sensor histidine kinase TERM 255 191877 - 191898 + G 72 -10.9 -3.06183 | opp_overlap 191891 191893 TGCGCCATATCGGCT TGCGGGTGT TCAA ACACCTGCA TTCGCTGGAGCTGGC CJA_0141 191519 - 193327 + | ABC transporter, ATP-binding protein CJA_0142 194165 - 193338 - | metallo-beta-lactamase superfamily domain protein CJA_0143 195420 - 194224 - | drug resistance transporter, Bcr/CflA subfamily TERM 256 195202 - 195176 - G 70 -7.2 -4.13767 | gap 1, overlap 195179 195193 CTGCTCAGGGTAAAA CCACCCAGGCC AAACAG GGCCAGGG-GG CGGCGGCCGATCATA TERM 257 195431 - 195446 + H 71 -10.4 -2.67289 | overlap 195430 195433 GTCATAACAGGTATC GAGCGC AAAC GCGCTC CTTCATGTTTCGGAT CJA_0144 195719 - 196510 + | probable partition-related protein CJA_0145 196758 - 196552 - | hypothetical protein TERM 258 196781 - 196763 - R 75 -6.6 -4.5442 | TTCTTAAGCACAAAA CCATCCAG TTT CCGGTTGG AATGCAGCTAGTTAA CJA_0146 197502 - 196789 - | hypothetical protein CJA_0147 198336 - 197722 - | hypothetical protein TERM 259 198968 - 199014 + r 95 -12.4 -4.04188 | overlap 198971 AAAATTTTCATTGAC TTTTTATGCACTACGGTGCC TGGGTAT GGCACCGTAGTGCATCATCA TTATTCTATTTCGAT TERM 260 198971 - 199011 + r 100 -18.5 -3.05036 | overlap 198968 ATTTTCATTGACTTT TTATGCACTACGGTGCC TGGGTAT GGCACCGTAGTGCATCA TCATTATTCTATTTC CJA_0148 201783 - 199015 - | hypothetical protein CJA_0149 203390 - 202110 - | phosphate regulon sensor protein PhoR TERM 261 202345 - 202372 + g 100 -10 -4.93968 | overlap 202368 GAGACGTAGAAGTGG TTTTTATCCTGC CATA GCAGGATGGAAA TTTTTCCTTCTGCCT phoB 204125 - 203427 - | phosphate regulon transcriptional regulatory protein PhoB TERM 262 203836 - 203848 + g 90 -7.7 -4.83722 | TCGTCGGCGCCGACT TCCAG GCC CTGGA TTTTGTTGTCCTCTT TERM 263 203970 - 203984 + g 73 -4.2 -4.75372 | overlap 203972 CATCATCCAGTCGAG CAGGAT CAG ATCCGG TTTTTCGTCGATGAT ubiA 205140 - 204211 - | 4-hydroxybenzoate polyprenyl transferase TERM 264 205096 - 205108 + g 71 -3.3 -4.78764 | TATCGGTGCCTTGTG CCGTG GGC TGCGG TTTTTAGTGGGTTTG ubiC 205772 - 205161 - | chorismate--pyruvate lyase TERM 265 205921 - 205934 + H 78 -5.2 -4.99043 | AACTCGCGCGCTTTG GCCG GTTTTG CGGC TTTTGTTTATCACAC hup 205964 - 206239 + | DNA-binding protein HU TERM 266 206247 - 206266 + F 100 -12.8 -4.9725 | opp_overlap 206240 206247 ATGAATAATCCACAA GCCCTGGC GACC GCCGGGGC TTTTTGTCTGGAGGT TERM 267 206266 - 206247 - f 79 -10.6 -3.48153 | opp_overlap 206247, overlap 206240 ATGAATAATCCACAA GCCCTGGC GACC GCCGGGGC TTTTTGTCTGGAGGT TERM 268 206911 - 206921 + G 74 -2.4 -5.1615 | GCTGATGCAATTCGC GCCC TAT GGGG TTTTTTGCCTGTTGG CJA_0154 206285 - 207652 + | proton/glutamate symporter CJA_0155 208380 - 207682 - | hypothetical protein hisB 208615 - 209208 + | imidazoleglycerol-phosphate dehydratase TERM 269 209835 - 209822 - g 79 -3.8 -5.03314 | opp_overlap 209830 TCCACCCGGAAAAAA GCCA CACCGT TGGC CTGCAACTGTTAAAG hisH 209230 - 209880 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit hisA 209938 - 210669 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisF 210683 - 211456 + | imidazoleglycerol phosphate synthase, cyclase subunit TERM 270 211517 - 211493 - T 100 -8.5 -5.7946 | opp_overlap 211493 TGTTCAACAAAAAAA GCCCCGGTG TGATGAG CATCGGGGC TTTTTGCTATGGGTG TERM 271 211493 - 211517 + T 100 -11.4 -4.81551 | opp_overlap 211493 TGTTCAACAAAAAAA GCCCCGGTGT GATGA GCATCGGGGC TTTTTGCTATGGGTG CJA_0160 212267 - 211551 - | hypothetical protein TERM 272 211764 - 211776 + g 74 -3.3 -5.00616 | CTCCGTGTTGGGAGT TACCG CCC CGGTC TTTTTTACGGCGACC TERM 273 211782 - 211803 + g 90 -4.4 -5.41143 | CGCCCCGGTCTTTTT TACGGCGA CCTTTT TCGCGGTA TTTTTTTCAGGCCTG TERM 274 212118 - 212154 + g 74 -7.9 -4.07568 | overlap 212116 212119 TTTGACTTTTTTAGT TGCGTTGGCGGCTGC TTTTTTC GCAGCAACCAACGCC TTTTGCGCAGACGCG TERM 275 212119 - 212153 + g 75 -11.4 -3.04398 | overlap 212116 212118 TTGACTTTTTTAGTT GCGTTGGCGGCTGC TTTTTTC GCAGCAACCAACGC CTTTTGCGCAGACGC TERM 276 212999 - 212981 - g 82 -3.1 -5.25805 | overlap 212984 AAGAAATGCAAAAAA TCATGCA GGAAG TGCAGGA AAAAGCGATTGCCAA TERM 277 213081 - 213037 - g 100 -4.9 -5.55695 | opp_overlap 213051, overlap 213041 213046 GAAGAACAGAAAAAA CTGAGCGAAGAAAACCAAACC AAG GGTAAGGCTTTCCTCGACGAG AACAAGGCTAAAGAA CJA_0161 212719 - 213450 + | macrophage infectivity potentiator TERM 278 213497 - 213485 - T 75 -2.7 -5.24129 | GCCGCTCATAAAAAA TTTCC GGG AGAAA TTTTCAACGCCGCGT TERM 279 213583 - 213554 - T 95 -16.7 -2.53995 | opp_overlap 213554 213562, overlap 213562 ATGGATGGCAAGCCA TAAAAAAACCCGC TACG GCGGGTTTTTTTA TGGCTTGCACCTGAG TERM 280 213554 - 213583 + T 95 -16.7 -2.53263 | opp_overlap 213554 213562, overlap 213562 ATGGATGGCAAGCCA TAAAAAAACCCGC TACG GCGGGTTTTTTTA TGGCTTGCACCTGAG TERM 281 213562 - 213575 + T 100 -9.5 -5.66684 | opp_overlap 213554 213562, overlap 213554 CAAGCCATAAAAAAA CCCGC TACG GCGGG TTTTTTTATGGCTTG TERM 282 213575 - 213562 - T 100 -9.5 -5.66684 | opp_overlap 213562 213554, overlap 213554 CAAGCCATAAAAAAA CCCGC TACG GCGGG TTTTTTTATGGCTTG algQ 214080 - 213613 - | transcriptional regulator AlgQ dsbH 214658 - 214176 - | protein-disulfide reductase TERM 283 215340 - 215305 - g 84 -10.5 -3.83026 | GGGTTGTACATGAAA TCGAGTATGGTGCCG ATGCGG CGACACAACACTCGA TACCGGCCAATAAGC CJA_0165 214932 - 215399 + | Flagellar basal body-associated protein FliL gshA 217006 - 215396 - | glutamate--cysteine ligase CJA_0166 217408 - 217091 - | hypothetical protein CJA_0167 218718 - 217441 - | transporter, small conductance mechanosensitive ion channel (MscS) family TERM 284 217810 - 217823 + g 79 -2.4 -5.17353 | TTGCTGGTTATCAGC TTCG ATGTCG CGAA TTTTTTCCTCGATAT TERM 285 218858 - 218828 - R 100 -18.5 -4.12532 | opp_overlap 218831 218835 218857, overlap 218831 218835 CTTGTGAGATAGAAA GAATAAACCCGGC AAGCA GCCGGGTTTATTC TTGACGAAGATAGGT TERM 286 218855 - 218831 - R 100 -14.4 -4.18674 | opp_overlap 218831 218835, overlap 218828 218835 GTGAGATAGAAAGAA TAAACCCGGC AAGCA GCCGGGTTTA TTCTTGACGAAGATA TERM 287 218831 - 218855 + r 95 -14.4 -3.61715 | opp_overlap 218831 218828 218835, overlap 218835 GTGAGATAGAAAGAA TAAACCCGGC AAGCA GCCGGGTTTA TTCTTGACGAAGATA TERM 288 218851 - 218835 - R 93 -10.8 -4.65458 | opp_overlap 218831 218835, overlap 218831 218828 GATAGAAAGAATAAA CCCGGC AAGCA GCCGGG TTTATTCTTGACGAA TERM 289 218835 - 218851 + r 93 -10.8 -4.44667 | opp_overlap 218835 218831 218828, overlap 218831 GATAGAAAGAATAAA CCCGGC AAGCA GCCGGG TTTATTCTTGACGAA CJA_0168 219673 - 218879 - | Short-chain alcohol dehydrogenase family protein TERM 290 219618 - 219640 + g 83 -9.8 -4.11692 | opp_overlap 219634 ATACCCAGGCCGTGG GTTGCGCCGG TAA TCAGCGCAAC TTTTCCGCGTAAATC CJA_0169 220525 - 219686 - | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase TERM 291 220547 - 220596 + r 73 -9.9 -3.31322 | gap 1, overlap 220549 220555 TTTTCTCTCTATTTC TCATCGGCTAACGCCCGCTGTCGG AAA CCGACAGCGGGCGA-GGTTGGGTA TTCTGACAGCTTAAA TERM 292 220549 - 220594 + r 81 -12.5 -3.224 | gap 1, overlap 220547 220555 TTCTCTCTATTTCTC ATCGGCTAACGCCCGCTGTCGG AAA CCGACAGCGGGCGA-GGTTGGG TATTCTGACAGCTTA TERM 293 220555 - 220589 + r 100 -17.8 -3.21726 | overlap 220549 220547 CTATTTCTCATCGGC TAACGCCCGCTGTCGG AAA CCGACAGCGGGCGAGG TTGGGTATTCTGACA urh105A 223214 - 220653 - | unsaturated rhamnogalacturonyl hydrolase, putative, urh105A TERM 294 220803 - 220780 - G 72 -6.6 -4.25104 | opp_overlap 220780 CCGTCGCGACCAAAA CCAAGGCCAG CCAC CAGGCATTGG TTGGTCATGCTGATT TERM 295 221463 - 221477 + g 88 -5.6 -5.27938 | overlap 221465 GTTGCGCAGGTAGTC GACCGC CTT GCGGTA TTTTTCTTTACCGGT TERM 296 221465 - 221475 + g 78 -8.2 -4.27026 | overlap 221463 TGCGCAGGTAGTCGA CCGC CTT GCGG TATTTTTCTTTACCG TERM 297 223284 - 223257 - R 100 -14.2 -3.90112 | opp_overlap 223244 223241 223263, overlap 223259 CTTTTTTGAAGCAAA TAGGGATGCCAG CGAG CTGGCATCCCTT AGGCTCTAACAATGG TERM 298 223282 - 223259 - R 100 -16.8 -3.54146 | opp_overlap 223244 223241 223263, overlap 223257 TTTTTGAAGCAAATA GGGATGCCAG CGAG CTGGCATCCC TTAGGCTCTAACAAT CJA_0171 226021 - 223310 - | TonB-dependent receptor TERM 299 223746 - 223725 - G 72 -6.5 -4.30014 | CCGATGAATCCAAAA TCCTGCCAG AAGC CAGGCAAGA AGGTGAACGGAGTTT pga28A 227733 - 226264 - | polygalacturonase, putative, pga28A TERM 300 227118 - 227131 + g 70 -3.8 -4.60924 | CCTGGGTTGGGAAGC CTGG CACACT CCAG TTTTTACCACCTTTC CJA_0173 228030 - 227896 - | hypothetical protein TERM 301 228080 - 228025 - G 100 -12.3 -5.35222 | opp_overlap 228028 AAAATTTACAAAAAA TGACATGTATACGTTTTCATATT TTTAATAATT AAAATGTAAACGTATACATGTCA CTTCGACTAAAAAAA TERM 302 228234 - 228221 - H 81 -3.9 -5.36441 | opp_overlap 228221 TGCCTACATAAAAAA TGTAA ACGG TTACA CTTGGTTGTTTTTGC TERM 303 228327 - 228346 + H 100 -11.4 -6.07627 | overlap 228329 ACCATTGCCGATTTT TAGGCGCC CTAG GGCGCCTG TTTTTTTTTGAGGGT TERM 304 228329 - 228344 + H 100 -11.8 -4.69028 | overlap 228327 CATTGCCGATTTTTA GGCGCC CTAG GGCGCC TGTTTTTTTTTGAGG CJA_0174 228491 - 230011 + | dehydratase CJA_0175 230198 - 231358 + | proton-translocating nicotinamide nucleotide transhydrogenase subunit PntAA TERM 305 231554 - 231566 + G 78 -7.7 -4.3898 | AAGGTGTCAGCCTGT CCAAG GTG CTTGG TTTTGTGGCCATGGT pntA 231373 - 231657 + | NAD(P) transhydrogenase, alpha subunit TERM 306 232081 - 232097 + G 77 -5.9 -4.67234 | ATGGGCCTGGGTGTA GTGATTG GTG CAATTAC TTTTTCCGGTTCCGT TERM 307 232611 - 232599 - g 71 -3.3 -4.77438 | opp_overlap 232579 ATTTATCATGAAAAA TGCCG GTT CGGTA ATCATTGTGCCAGGT TERM 308 233056 - 233045 - g 72 -4.4 -4.65916 | opp_overlap 233045 GCGATGCGAAGAAAA TGGT TGAA ACCA TTGTTAAAAACCTTG CJA_0177 231673 - 233076 + | proton-translocating nicotinamide nucleotide transhydrogenase subunit PntB TERM 309 233092 - 233110 + F 100 -10.3 -5.68023 | TTTTCTAGCCCTGTT GAGCGCT CCCGT AGCGCTC TTTTTTTACTTGTGG CJA_0178 233154 - 233552 + | glyoxylase family protein TERM 310 233572 - 233588 + T 76 -9.4 -3.75153 | opp_overlap 233572 TGTGTGATTAGCAAA GCCGCA CTGGA TGCGGC TTTGCCTTACAGGCC TERM 311 233588 - 233572 - T 79 -10.1 -3.78775 | opp_overlap 233572 TGTGTGATTAGCAAA GCCGCAC TGG ATGCGGC TTTGCCTTACAGGCC kdgK 234692 - 233604 - | ketodeoxygluconokinase TERM 312 234586 - 234572 - G 91 -3.4 -5.48825 | CAGGAGTCAAAAAAA CGAGGG AAA CCGCCG TGTTATTCGGTTGTT TERM 313 235949 - 235939 - g 75 -6.8 -4.37886 | opp_overlap 235939 235938 GGACGGCTCACAAAA GCTG CCC CAGC GTTTGTTGGAAACCC TERM 314 236203 - 236232 + G 75 -5 -4.82901 | opp_overlap 236211 236214, overlap 236204 CGATGCCACCCCATT TGTTCAAACCAC AACCCA GTGGCTTGAGCG TTTTTATGCCAAAGG CJA_0180 234806 - 236284 + | D-mannonate oxidoreductase TERM 315 236300 - 236335 + F 100 -19.2 -2.80443 | TCGCTTTTATTTTCA TTCCTGCATGTCCCAT GGCG AAGGGACATGCAGGAA TGTCATGAACTATCC TERM 316 236625 - 236651 + G 72 -5.8 -4.3534 | overlap 236620 236620 236627 CATCCATATCGTTGG TGCAGGCCCG GCCAGCA CGCGCCTGTA TTTTGATGCTTACGC TERM 317 236702 - 236740 + G 75 -5.2 -4.63218 | GTAAAACCTGGGGCA CGTCCGGCTCCGCG-ACC TTGAC GGTGCGCGC-GCCTGGCG TTTTGTTACAACAAC pme8C 236371 - 237471 + | pectin methylesterase, putative, pme8C TERM 318 238014 - 238063 + G 81 -10.1 -3.90744 | gap 1 CAGCCTGCTGATGCG CGCACCTGGGTTGA-GGGGTTTTC ACT GGAAACCCTGTTAATCCAGCAGCG TTATTTGCAAGCCAA TERM 319 238931 - 238946 + G 91 -5.4 -5.45802 | gap 1, overlap 238931 TGTATTGACCGGATT GG-CAGC GGT GCTGGCC TTTTTCTTTTCGCGC TERM 320 239215 - 239200 - g 72 -8.2 -3.72695 | overlap 239201 AGTGTCGCGATGAAA CGGCGC GTCA GCGCCA TGAAATGAATCATGT CJA_0182 237624 - 239966 + | putative methyl-accepting chemotaxis protein fbp 240945 - 239974 - | fructose-1,6-bisphosphatase TERM 321 240096 - 240106 + g 72 -6.8 -4.18762 | TTTCGCTCCAGGCTT TGCC GCC GGCA TTTTCGGTCAGCATT TERM 322 240215 - 240201 - G 70 -5.6 -4.34402 | TCGGGTACATGAAAA TGCCCC CGC GGGTCA GCACCCGATGCACAT TERM 323 240745 - 240771 + g 71 -3 -4.81249 | opp_overlap 240748 CAGCAAATCCTTGAT TAACTGGTTG GCGATAA CATCCAGTTG TTTTTGGGTTTCACC fbaA 242040 - 240961 - | fructose-bisphosphate aldolase, class II TERM 324 241166 - 241187 + g 70 -5.9 -4.18197 | opp_overlap 241141 241160 TCCCAAAAGGCCCAT TGGGTATCG GTGT CGATATTCA TTTTGACTACACCAT TERM 325 241856 - 241840 - G 90 -4.3 -5.40072 | CTTGCCGCAAAAAAA CGCAGAG CCG CCTTGCG ACAATTGCACGATTA TERM 326 241891 - 241909 + g 72 -10.2 -3.28637 | opp_overlap 241884 TGAATTTACCTTGCG CGCCGCCT CAA GGGTGGCG TTGATAGTGTTGGTG TERM 327 241954 - 241971 + g 70 -10.5 -2.73635 | opp_overlap 241954, overlap 241953 CGCTGGATAGGCAAA GCCGCCG GCTT TGGCGGC ATTTAACAGGGTTTG TERM 328 241971 - 241954 - G 77 -9.8 -3.70902 | opp_overlap 241953 241954 CGCTGGATAGGCAAA GCCGCC GGCTTT GGCGGC ATTTAACAGGGTTTG TERM 329 242093 - 242105 + r 72 -9.1 -3.61971 | overlap 242091 242088 AAGGATTCGCCGAGT GGCTC TTT GAGCC TGTTGTTCTTGTCTC CJA_0185 242916 - 242146 - | triosephosphate isomerase TERM 330 242354 - 242334 - G 75 -5.3 -4.72272 | opp_overlap 242334 242305, overlap 242336 TGTCCGCATCAAAAA TACGCGCCA GTT CAGCGCGAA TGTATTGGTGTACTG TERM 331 242352 - 242336 - G 72 -7.9 -3.98256 | opp_overlap 242334 242305, overlap 242334 TCCGCATCAAAAATA CGCGCCA GTT CAGCGCG AATGTATTGGTGTAC CJA_0186 243145 - 242903 - | hypothetical protein TERM 332 243318 - 243282 - R 79 -7.6 -4.37658 | gap 1, opp_overlap 243288, overlap 243283 243284 AATTGGTTTACAAAA GTGCATTTTTTTAGAAA AAAA TTGCTAAAAAAATGC-C TAAACAGTGTGTAAA TERM 333 243317 - 243284 - R 73 -11.3 -2.52946 | opp_overlap 243288, overlap 243282 243283 TTGGTTTACAAAAGT GCATTTTTTTAGAAA AAAA TTGCTAAAAAAATGC CTAAACAGTGTGTAA CJA_0187 245024 - 243444 - | putative GGDEF domain protein TERM 334 244324 - 244335 + g 72 -7.2 -4.21098 | opp_overlap 244322 244324 CTGTCTTCGAAAATA CCGC GGAA GCGG TTTTCCAATTGCTCT TERM 335 244866 - 244851 - G 75 -11.8 -2.87132 | opp_overlap 244865 GCGGTTGCCCACATA GGCGGC AATT GCCGCC GGGGCACGCACGGTT CJA_0188 245419 - 245027 - | hypothetical protein CJA_0189 246714 - 245455 - | hypothetical protein CJA_0190 247678 - 246845 - | response regulator TERM 336 247471 - 247494 + g 90 -14.6 -2.75267 | gap 1, overlap 247468 CGGGCATGGCGCGCA CCG-CGCCGAG CAG CTCGGCGCCGG TCATATTGGGCATTT CJA_0191 248533 - 247757 - | hypothetical protein CJA_0192 248959 - 248585 - | hypothetical protein CJA_0193 248963 - 249109 + | hypothetical protein CJA_0194 249136 - 250404 + | Peptidase family M48 family TERM 337 250426 - 250450 + F 100 -12.2 -5.59357 | opp_overlap 250430 TGCAAACTGTACCTA TAAACCCGGC CTGGT GCCGGGTTTG TTTTTTTAGTGTCCT TERM 338 250446 - 250430 - f 84 -10.8 -3.92641 | opp_overlap 250426 AACTGTACCTATAAA CCCGGC CTGGT GCCGGG TTTGTTTTTTTAGTG CJA_0195 250575 - 251123 + | TRAP transporter, DctQ-like membrane protein family TERM 339 251427 - 251394 - g 77 -12.3 -2.73875 | overlap 251399 TGCTGGCTAACATGA CCAAAGCCTGCGGGC GCTT GCCCGGCGGCTTGGG GCTGTCGGTGGTGAT TERM 340 251422 - 251399 - g 76 -9.4 -3.84648 | overlap 251394 GCTAACATGACCAAA GCCTGCGGGC GCTT GCCCGGCGGC TTGGGGCTGTCGGTG CJA_0196 251117 - 252499 + | TRAP transporter, DctM subunit CJA_0197 252577 - 252972 + | acyl-CoA hydrolase TERM 341 253327 - 253341 + G 81 -6.4 -4.78753 | TCAGTATTCACTGGA TCAGCG CGC TGCTGA TTTTCTTCCTGTTCG TERM 342 253748 - 253765 + G 77 -7 -4.52589 | AGTCCTCCATGCACT TGGTGC CCTGAT GCACCA TTTTGTCTGGCGCGA CJA_0198 253164 - 253823 + | Cytochrome b561 homolog 2 ycel3 253895 - 254479 + | yceI-like protein, ycel3 TERM 343 254507 - 254535 + F 100 -21.9 -4.57073 | opp_overlap 254507 254525, overlap 254511 GGATGTATCAAAAAA CAAACAGGGGGCT AAA AGCCCCCTGTTTG TTTTTAGGGGGAGTG TERM 344 254535 - 254507 - f 100 -21.9 -5.1675 | opp_overlap 254507 254511, overlap 254525 GGATGTATCAAAAAA CAAACAGGGGGCT AAA AGCCCCCTGTTTG TTTTTAGGGGGAGTG TERM 345 254511 - 254531 + F 100 -16.9 -4.85782 | opp_overlap 254507 254525, overlap 254507 GTATCAAAAAACAAA CAGGGGGCT AAA AGCCCCCTG TTTGTTTTTAGGGGG TERM 346 254644 - 254686 + F 83 -10.1 -4.10566 | AAATTAACTTTTATT GGACTATATTCCTATTTTT AAAAA AATTATGGGAATATAGTCC TTGTTATTGTTGAAT TERM 347 254737 - 254782 + F 100 -17.9 -4.57569 | opp_overlap 254746, overlap 254736 ATTTCTTATTTTTAT GGGACTATATTCCCATTAAAT GACT ATTAATTGGGAATATAGTCCC TTTTTGGGGGGGTAA TERM 348 254842 - 254871 + G 77 -11.5 -3.20382 | opp_overlap 254842 254839, overlap 254846 TTTCCTCGAGAACAC CAGATCCTGGCCA GGTT TGGCGAGGATTTG TTGCTGGCTGTGAAG TERM 349 254846 - 254867 + G 78 -8.7 -4.26202 | opp_overlap 254842 254839, overlap 254842 CTCGAGAACACCAGA TCCTGGCCA GGTT TGGCGAGGA TTTGTTGCTGGCTGT CJA_0200 254812 - 255102 + | hypothetical protein TERM 350 255114 - 255082 - f 80 -6.1 -4.73682 | opp_overlap 255109 CTGCAGAATATAAAA CTGTTGAGAGGCTCA AAA TGAGCCGCACCGCAG TAGCGGTATATGCGT CJA_0201 255099 - 256349 + | hypothetical protein TERM 351 256350 - 256384 + T 100 -12.4 -4.95155 | GCGTTTAATCTTTAG TGAGATAAGACAATGT AAT ATATTGGCTTATCTCA TTTTTATGATGTGCA CJA_0202 257294 - 256425 - | conserved hypothetical protein TIGR00255 TERM 352 257806 - 257766 - g 88 -11.1 -4.07568 | CGCCCTGGGTGAAAA CACCATCCACCTGGATTGC GAT GTGATCCAGGCCGATGGCG GTACGCGTACGGCGT rph 257434 - 258153 + | ribonuclease PH TERM 353 258630 - 258619 - g 74 -2.2 -5.14965 | overlap 258621 AGCGCCATTAAAAAA GACC CGGC AGTC GAGGCGCGTGTGGAT TERM 354 259687 - 259669 - g 70 -4.4 -4.56597 | overlap 259671 GGCCTGTTTGAAAAA GGCGCACC ATC GACGCGAC CGCTGGCTGGTAAAA TERM 355 259731 - 259705 - g 79 -4.3 -5.00616 | overlap 259707 259708 CTGGCTGGTAAAAAA GACGTGCTCGG TGCCC CCGAACACCGC GAGGTTGCCCGCCAG TERM 356 260359 - 260342 - g 78 -8.4 -4.15222 | AGCGCCCCGAACAAA CACCGC TGAACC GCGGTG ATGCCAATTACGATC cel3A 258427 - 261036 + | glucan 1,4-beta-glucosidase cel3A TERM 357 261065 - 261093 + T 100 -18.2 -5.66684 | opp_overlap 261065 TTCCACCATAAAAAA TCCCCCGCCAGG TCTAT TCTGGCGGGGGA TTTTTTTATCGGTTA TERM 358 261093 - 261065 - T 100 -17.5 -5.31275 | opp_overlap 261065 TTCCACCATAAAAAA TCCCCCGCCAG GTCTATT CTGGCGGGGGA TTTTTTTATCGGTTA metF 261978 - 261130 - | 5,10-methylenetetrahydrofolate reductase TERM 359 261889 - 261869 - G 84 -3.8 -5.28176 | opp_overlap 261888, overlap 261870 GTCACCGAGAAAAAA TCGGGCGC GAATT GCGCCAGC TGGTCGCGCACCCTG TERM 360 261992 - 262017 + r 72 -10.5 -2.76261 | overlap 261991 261994 ATGTTTTTTTTCCTG TAGGTTGGGCA GTCA TGCCCAACATA ATTTCAACCTTGGGC ahcY 263447 - 262059 - | adenosylhomocysteinase TERM 361 262396 - 262421 + g 70 -4.7 -4.56133 | gap 1, overlap 262397 262397 TTGTTGGTGGTTTTA TCGC-GGTACAC CTT GTGTACCTGGGG TTTTACTTCTTCCCA TERM 362 262900 - 262916 + g 86 -6.5 -5.04385 | TTTACGTTGATCGCG GGCACTT TCA GGGTGCC TTTTTTCAGCATCTC metK 264712 - 263558 - | S-adenosylmethionine synthetase TERM 363 264347 - 264370 + g 73 -3.7 -4.74801 | opp_overlap 264346, overlap 264349 GTAACCAAACATCAG GCCCTGGTC ACCGGC GCCCAGGTC TTTTTGATCGCCTTC CJA_0208 265821 - 264784 - | transcriptional regulator, ArsR family CJA_0209 266101 - 265919 - | hypothetical protein tkt 266158 - 268161 + | transketolase TERM 364 268168 - 268197 + F 95 -11.5 -4.38154 | opp_overlap 268173, overlap 268173 268187 GAGGACTAAGCAAGC AAAAACACCCGGC GCGA GTCGGGTGTTTTG TTTTATCGCCCGTGT TERM 365 268173 - 268192 + F 100 -11.4 -5.18371 | opp_overlap 268173, overlap 268168 268187 CTAAGCAAGCAAAAA CACCCGGC GCGA GTCGGGTG TTTTGTTTTATCGCC TERM 366 268192 - 268173 - f 100 -9.2 -4.93547 | opp_overlap 268173 268168 268187 CTAAGCAAGCAAAAA CACCCGGC GCGA GTCGGGTG TTTTGTTTTATCGCC TERM 367 269238 - 269207 - g 95 -9.4 -4.84363 | opp_overlap 269207 CGAAATTATCAAAAA CGCCAAAACCGTTC TGTG GAACGGTCCCTGCG GTGTATTTGAGTTCG pgk 268299 - 269471 + | phosphoglycerate kinase TERM 368 269498 - 269529 + F 90 -13.2 -3.60098 | opp_overlap 269505, overlap 269505 TCAATGGAGTGCCGG TTAAAAAGGCGATC TTCG GATCGCCTTTTTTA TTTGGCGTAGAAAAT TERM 369 269522 - 269505 - f 95 -11.3 -4.56775 | opp_overlap 269498 269505 AGTGCCGGTTAAAAA GGCGATC TTCG GATCGCC TTTTTTATTTGGCGT TERM 370 269505 - 269522 + F 100 -11.3 -5.64421 | opp_overlap 269505, overlap 269498 AGTGCCGGTTAAAAA GGCGATC TTCG GATCGCC TTTTTTATTTGGCGT TERM 371 269575 - 269585 + F 76 -2.4 -5.30348 | TTTTTTGTCATGCCA ACCC TAT GGGG TTTTTGTTGTTGAGT pel3A 269907 - 271052 + | pectate lyase, putative, pel3A TERM 372 271089 - 271109 + T 100 -13.9 -5.67063 | overlap 271090 CCTGTAGTTCGCTTG ACCGGCCCC TTT GGGGCCGGC TTTTTTTGTGGTCAA TERM 373 271090 - 271108 + T 100 -17.4 -3.99153 | overlap 271089 CTGTAGTTCGCTTGA CCGGCCCC TTT GGGGCCGG CTTTTTTTGTGGTCA TERM 374 271151 - 271186 + T 75 -2.7 -5.24129 | gap 1, overlap 271147 CAGCCACCCTGTGGG TTGTCGCGAGGCGA CATCAACCA TCGTTTC-CGACAA TTTTTTGTGGCCCAG CJA_0213 271501 - 271358 - | hypothetical protein TERM 375 271765 - 271752 - g 84 -8.1 -4.60041 | ATCTATCCGCAAAAA GTCGC TCCG GCGAC AACCAAACCAACCAT TERM 376 271902 - 271921 + G 73 -9.2 -3.61764 | GAGCGCGGTGTGCGC CTGCTGGG GATT CCCGGCGG TTTGCGCGTTAATGG TERM 377 274718 - 274695 - g 72 -10.2 -3.27525 | overlap 274690 274699 GGGGTGCAAACCGAA GCCACCACCG ATAC CGGTGGCGGT CAAAACGTCAGTTAC glu81A 271521 - 275018 + | glucan endo-1,3-beta-glucanase, putative, glu81A TERM 378 275041 - 275067 + F 100 -16 -3.53811 | opp_overlap 275041 TCCATCGCTGGAAAA CACTCCCGGAAA TGA TTTTCGGGAGTG TTTCAGGCAAGTGCC TERM 379 275067 - 275041 - f 100 -13.8 -4.08767 | opp_overlap 275041 TCCATCGCTGGAAAA CACTCCCGGAAA TGA TTTTCGGGAGTG TTTCAGGCAAGTGCC CJA_0215 275369 - 278323 + | TonB-dependent receptor TERM 380 278378 - 278349 - f 79 -10.8 -3.50572 | opp_overlap 278350 278355, overlap 278350 278355 ATTGATGTGAGACAA GGAAAAGCCGCT TTTACC AGCGGCTTTTCT TTTTAATAAATAAGC TERM 381 278350 - 278377 + F 100 -14.3 -4.7497 | opp_overlap 278349 278350 278355, overlap 278355 TTGATGTGAGACAAG GAAAAGCCGCT TTTACC AGCGGCTTTTC TTTTTAATAAATAAG TERM 382 278377 - 278350 - f 86 -14.3 -2.70022 | opp_overlap 278350 278355, overlap 278349 278355 TTGATGTGAGACAAG GAAAAGCCGCT TTTACC AGCGGCTTTTC TTTTTAATAAATAAG TERM 383 278372 - 278355 - f 81 -8.4 -4.53034 | opp_overlap 278350 278355, overlap 278350 278349 GTGAGACAAGGAAAA GCCGCT TTTACC AGCGGC TTTTCTTTTTAATAA TERM 384 278355 - 278372 + F 100 -8.4 -5.3104 | opp_overlap 278355 278350 278349, overlap 278350 GTGAGACAAGGAAAA GCCGCT TTTACC AGCGGC TTTTCTTTTTAATAA TERM 385 279115 - 279105 - g 77 -3.2 -5.09426 | TCCAATGTGAAAAAA CTGA TTG CCAG GAAAAATCAATCCTT CJA_0216 278418 - 279140 + | hypothetical protein CJA_0217 279153 - 280166 + | Pass1-related protein TERM 386 280784 - 280812 + G 84 -3.8 -5.23396 | gap 1 TGCGTCACTGCGCCT GGCCTCCGGCGAA ATGA TTAGC-GGAGACC TTTTTATTGATTGTT CJA_0218 280203 - 281681 + | tryptophan halogenase TERM 387 281747 - 281723 - Tf 100 -15.8 -3.62775 | opp_overlap 281723, overlap 281738 ATCATCGCTTAATAA CATGACCCGG AAATA CCGGGTCATG TTATCCGGATTACAA TERM 388 281723 - 281747 + TF 100 -15.8 -3.33261 | opp_overlap 281723 281738 ATCATCGCTTAATAA CATGACCCGG AAATA CCGGGTCATG TTATCCGGATTACAA CJA_0219 282215 - 281757 - | hypothetical protein TERM 389 281895 - 281925 + gF 70 -10.4 -2.52104 | opp_overlap 281894 281915, overlap 281894 281892 CGTTTGTACAATCAT GCTGGAGCCGGTAT AGC ATACCGGTGCCACC GTCTTCATGATCTTT CJA_0220 281932 - 282036 + | hypothetical protein CJA_0221 283049 - 282357 - | hypothetical protein TERM 390 282895 - 282911 + g 71 -2.2 -4.88407 | overlap 282897 GGGTTGTCTGTATCT CTGGAT TGAAC ATCCCG TTTTTCATTCGCTAG CJA_0222 283112 - 283273 + | hypothetical protein TERM 391 283259 - 283305 + F 71 -10.2 -2.72052 | overlap 283265 ATGCAACTATGGGTT GCGGAATCCGGATAAGTCTC TGTGGTT GAGTCTTAACCGGATTTGGC TGATGTGATTGATTT TERM 392 283265 - 283299 + F 72 -8.6 -3.70417 | overlap 283259 CTATGGGTTGCGGAA TCCGGATAAGTCTC TGTGGTT GAGTCTTAACCGGA TTTGGCTGATGTGAT TERM 393 283375 - 283398 + F 74 -6 -4.70169 | gap 1, overlap 283361 CGGGGTGTTAGCAAA TGTGG-TGGGC TAT GCCCGTTCACA TTTTGTTGACTCTCC TERM 394 283421 - 283443 + F 100 -17.7 -5.08824 | GACTCTCCTTGCGTT GCCCCCGCC TGGAC GGCGGGGGC TTTTTTCGCTCGGGG cel3C 283555 - 286101 + | glucan 1,4-beta-glucosidase, putative, cel3C TERM 395 286107 - 286137 + F 78 -11.8 -2.96745 | overlap 286107 TCCCGAGTAAATGGC TGGCGGTATCCGGA TGT TGCGGATGCCGCCC ATTGTTTGCAATGTC TERM 396 286107 - 286138 + F 84 -10.2 -3.95378 | gap 1, overlap 286107 TCCCGAGTAAATGGC T-GGCGGTATCCGGA TGT TGCGGATGCCGCCCA TTGTTTGCAATGTCG TERM 397 286614 - 286602 - g 91 -9.1 -4.62904 | opp_overlap 286605, overlap 286593 286604 AAATACGCGCAAAAA TGCCC CAG GGGCA GGGTATATGGCCAGC glu16B 286172 - 287194 + | beta glucanase, putative, glu16B TERM 398 287905 - 287893 - g 91 -9.1 -4.58685 | overlap 287895 AAATTCGCGCAAAAA TGCCC CAG GGGCA GGGCACCTGGCCGGC TERM 399 288944 - 288954 + G 71 -2.6 -4.91109 | AGCTAACCTTGCCAG TATT GCC AATA TTTTTGTGATGGAGC glu16A 287247 - 290024 + | beta glucanase, putative, glu16A TERM 400 290189 - 290206 + T 100 -3.3 -6.07969 | GCTTGTTAGTAATAT CGGCCAG TTTG CTGCTCG TTTTTTTTGATTTTC CJA_0226 291440 - 290265 - | FAD binding domain protein TERM 401 290438 - 290419 - G 74 -8.6 -4.0031 | gap 1, opp_overlap 290436 290437, overlap 290422 ACGTCGATGAAATAA GCA-GCCAG TGC CTGGCCTGC CCATAAGCCTTGTAT TERM 402 291008 - 291029 + g 70 -3.6 -4.67904 | overlap 290990 291027 GACGCAGTGAATAGT CGCTGTGC ACCTTG GTACCGCG TTTTTGCGCTTCGTG TERM 403 291260 - 291215 - G 100 -15.3 -4.09739 | opp_overlap 291217, overlap 291217 GTAATTCGCGCAAAA CAGCGCTGGCGGCGGGGGGAA TGGT CTCTCCCAGCGGCCAGCGCTT GGCTGTGGTGCGATG TERM 404 291217 - 291258 + g 100 -19.4 -3.14468 | opp_overlap 291215 291217 AATTCGCGCAAAACA GCGCTGGCGGCGGGGGGA ATGGTC TCTCCCAGCGGCCAGCGC TTGGCTGTGGTGCGA TERM 405 291258 - 291217 - G 100 -17.9 -3.64488 | opp_overlap 291217, overlap 291215 AATTCGCGCAAAACA GCGCTGGCGGCGGGGGGAA TGGT CTCTCCCAGCGGCCAGCGC TTGGCTGTGGTGCGA TERM 406 291367 - 291337 - G 72 -11.1 -3.07962 | gap 1 TTGCATAGCGCAATA GCGGTTGCCGACCC GGCC GGGCCGGC-ACCGA CTATGGCTACCCGAA CJA_0227 293479 - 291425 - | hypothetical protein TERM 407 292232 - 292242 + g 77 -6.8 -4.58663 | overlap 292226 TTTCGCATCGCCCAG TGCC AGG GGCA TTTTTACCCCCTGGT TERM 408 293045 - 293057 + g 70 -6.2 -4.25104 | CGGATTGCGCAGTGG CGGC GTCTG GCCG TTTTCATAAGCGGCG CJA_0228 294819 - 293497 - | hypothetical protein TERM 409 294725 - 294777 + g 81 -9.8 -3.99805 | gap 1, opp_overlap 294719 294723 294722 294756, overlap 294726 TCTGATATACAACTG CTGCTGGCTGCCATCGCTGGCAGTG AGAG CA-TGCCGACGACGGCGGCGAGCAA TTTCAGTTTTTGGGG TERM 410 294726 - 294776 + g 83 -13.3 -2.9916 | gap 1, opp_overlap 294719 294723 294722 294756, overlap 294725 CTGATATACAACTGC TGCTGGCTGCCATCGCTGGCAGTG AGAG CA-TGCCGACGACGGCGGCGAGCA ATTTCAGTTTTTGGG TERM 411 295102 - 295125 + r 95 -8 -5.33866 | opp_overlap 295099 295098, overlap 295103 TAAAAAAATGAGCGA CCCCGGCCAG TTAT CTGACCGGGA TTTTTTATGAGTTTC TERM 412 295103 - 295124 + r 86 -11.5 -3.78693 | opp_overlap 295099 295098, overlap 295102 AAAAAAATGAGCGAC CCCGGCCAG TTAT CTGACCGGG ATTTTTTATGAGTTT CJA_0229 296313 - 295153 - | transcriptional regulator, AraC family TERM 413 297219 - 297204 - g 70 -4.7 -4.52047 | CACTACAGGACAAAA CACTG TCTGTG CAGTG GGTAGGCGCCATGAA CJA_0230 296489 - 297469 + | hydrolase, alpha/beta fold family TERM 414 297841 - 297865 + G 81 -6.3 -4.8543 | opp_overlap 297841, overlap 297838 297842 GTTGATGGCAATGGA TGCCTACCCCA TCC TGGTGTGGGCC TTTTTCTCCGGGTTA TERM 415 297842 - 297864 + G 74 -9.8 -3.50535 | opp_overlap 297841, overlap 297838 297841 TTGATGGCAATGGAT GCCTACCCCA TCC TGGTGTGGGC CTTTTTCTCCGGGTT TERM 416 298061 - 298080 + G 82 -7.8 -4.55625 | overlap 298075 ATTTGCGCCATGATC CTGCCCGG CATT TCGGGTAG TTTTATCCTGTTACT CJA_0231 297542 - 298501 + | Predicted membrane protein TERM 417 298579 - 298521 - T 100 -17 -3.97368 | opp_overlap 298538, overlap 298523 298538 CGGCCAATCCATAAA GACTGCCCATAAAAAAACGCCGCG-GCC TGTTG GACTCGCGGCGTTTTTTTATGGGC-GAG AAGCCGGGCTTAAAA TERM 418 298579 - 298523 - T 100 -24.9 -3.57808 | gap 2, opp_overlap 298538, overlap 298521 298538 GCCAATCCATAAAGA CT-GCCCATAAAAAAACGCCGCG-GCC TGTTG GACTCGCGGCGTTTTTTTATGGGCGAG AAGCCGGGCTTAAAA TERM 419 298563 - 298538 - T 100 -10.4 -5.60993 | gap 1, opp_overlap 298538, overlap 298521 298523 CTGCCCATAAAAAAA CGCCGCG-GCC TGTTG GACTCGCGGCG TTTTTTTATGGGCGA TERM 420 298538 - 298563 + T 100 -9 -5.60993 | gap 2, opp_overlap 298521 298523 298538 CTGCCCATAAAAAAA CGCCGCG-G-CC TGTT GGACTCGCGGCG TTTTTTTATGGGCGA CJA_0232 299818 - 298589 - | D-3-phosphoglycerate dehydrogenase TERM 421 299624 - 299612 - G 71 -9.1 -3.53012 | opp_overlap 299610 GGGCGCGTTTTCAAA GACCC GGC GGGTC AGTTGGGTGCGCGAG TERM 422 301152 - 301164 + G 77 -6.2 -4.67011 | GTTTAATTTTGCCAA CGCC GCCGG GGCG TTTTTAGGTGGCGTT CJA_0233 300067 - 301308 + | putative transmembrane efflux protein TERM 423 301352 - 301328 - T 82 -12.9 -3.01924 | GATCCGCCGTCAACA GTGCGTGGC TAAACGG GCCACGCAC CTCGCCGCTACTGCT CJA_0234 302082 - 301360 - | putative lipoprotein TERM 424 301973 - 302000 + g 81 -11.2 -3.56643 | GCCTGGTTGTTATAG CCAGTGGCGCTG GCGA CAGCGGCACCGG TTTCGGCGATCTGCG CJA_0235 302821 - 302102 - | hypothetical protein TERM 425 303015 - 303040 + G 72 -9.7 -3.41325 | gap 1, overlap 303013 TTCCCTGTCGTTGAT GGCC-GCCCTGA TGC TCAGTGCTGGCC TGTTGTTGGGGTGTA TERM 426 303681 - 303713 + G 70 -6.9 -4.14243 | GTGGGGCAAGGGCCA CGCCAGCGAGCAG GATTACA TTGCCCTCTGGCG TTTTACCGTGCACTA man26C 302983 - 304242 + | endo-1, 4-beta mannanase, putative, man26C CJA_0237 304522 - 305430 + | PEP-CTERM putative exosortase interaction domain protein TERM 427 305450 - 305470 + TF 100 -14 -5.60993 | opp_overlap 305450 TTCGCCAATAAAAAA CGGGGCCA GATAA TGGCCCCG TTTTTTTATCAGCGC TERM 428 305470 - 305450 - Tf 100 -14 -5.4505 | opp_overlap 305450 TTCGCCAATAAAAAA CGGGGCCA GATAA TGGCCCCG TTTTTTTATCAGCGC rpiA 306163 - 305486 - | ribose 5-phosphate isomerase A TERM 429 306549 - 306527 - gR 71 -10.5 -2.70932 | opp_overlap 306536 306542 CTCTGCCGGTAACCA TGCCCAGGG GGTTG CCCTGGGCT CCCAGCATTTGGGGA TERM 430 306927 - 306910 - gR 73 -11.3 -2.55446 | overlap 306909 TAGAAAGCGATGAAT CTGCCTG CCTG CAGGCAG CCATGGAAAAGAAAA TERM 431 307310 - 307322 + Gr 74 -7.7 -4.07885 | opp_overlap 307320 GCCGGAGCGCCCCGG TGCCT ACA AGGCA TTTTGCAAAAGCATC ilvA 306162 - 307805 + | threonine ammonia-lyase, biosynthetic TERM 432 307833 - 307809 - TR 80 -7.1 -4.56597 | opp_overlap 307811, overlap 307811 TTCCTGGCCTAAAAA TATCCCGGC GTAAATT GCCGGGATT TTTTTATCTGCGTTG TERM 433 307811 - 307831 + Tr 100 -10.4 -5.72616 | opp_overlap 307809 307811 CCTGGCCTAAAAATA TCCCGGCG TAAAT TGCCGGGA TTTTTTTATCTGCGT TERM 434 307831 - 307811 - TR 80 -9.7 -3.90048 | opp_overlap 307811, overlap 307809 CCTGGCCTAAAAATA TCCCGGC GTAAATT GCCGGGA TTTTTTTATCTGCGT CJA_0240 308860 - 307862 - | Transcriptional regulator TERM 435 308341 - 308329 - G 71 -10.5 -2.91144 | overlap 308326 TCAGGCCGGAAATCA CGCCG ATG CGGCG GTGGCCGAGCGAGAT TERM 436 309020 - 308983 - H 83 -4.6 -5.40072 | opp_overlap 309018, overlap 308984 TCCTGTCCAAAAAAA GGCAGGCGGCAAGGGC TATTGG GCACTGGCCGCACGCG GCGTGAAGCCGCTAT TERM 437 309019 - 308984 - H 72 -8.1 -3.83561 | opp_overlap 309018, overlap 308983 CCTGTCCAAAAAAAG GCAGGCGGCAAGGGC TATTGG GCACTGGCCGCACGC GGCGTGAAGCCGCTA TERM 438 309364 - 309391 + G 71 -10.5 -2.95192 | overlap 309351 309363 309387 TGTCGGCCTGGCTGC GCCGCTCCGGT GTGCTG ACCGGGGCGGA ATTTATCACCTTCCG TERM 439 309410 - 309439 + G 83 -10.1 -4.0251 | gap 1, opp_overlap 309418, overlap 309418 TATCACCTTCCGCTT TGGCAACAGCCTGG GCG CCAGGCT-TTCCCA TTTGGTTGTGGTCGT TERM 440 309418 - 309432 + G 88 -11.4 -3.74178 | opp_overlap 309418, overlap 309410 TCCGCTTTGGCAACA GCCTGG GCG CCAGGC TTTCCCATTTGGTTG TERM 441 309432 - 309418 - g 75 -11.4 -3.01712 | opp_overlap 309418 309410 TCCGCTTTGGCAACA GCCTGG GCG CCAGGC TTTCCCATTTGGTTG CJA_0241 309066 - 310931 + | Na+/glucose symporter TERM 442 310968 - 310985 + F 100 -6.9 -6.02345 | opp_overlap 310968, overlap 310934 310969 GTGTTGCACTCAAGA TGCTGCG TTCG CGCGGCG TTTTTTTTGTCGTTG TERM 443 310969 - 310984 + F 76 -8.2 -4.18967 | opp_overlap 310968, overlap 310934 310968 TGTTGCACTCAAGAT GCTGCG TTCG CGCGGC GTTTTTTTTGTCGTT TERM 444 311727 - 311741 + G 78 -7.8 -4.38712 | ATATGCACTCTACAC CCGTCC ACA GGATGG TTTTATCAGCGTGGG TERM 445 311880 - 311868 - g 75 -4.7 -4.8384 | overlap 311869 311870 CAAAGAAGTCAAAAA CGGCC AGG GTCCG GCACCGATTAAAACC unk1 311104 - 312285 + | hypothetical protein unk2 312288 - 313535 + | Unk2 man5D 313546 - 314949 + | putative 1,4-beta mannosidase man5D TERM 446 314992 - 314975 - T 100 -9.9 -5.09225 | opp_overlap 314975 AGTGCATGTAAAAAA CTGCAAG TTGC CTTGCAG TTTTTTTTGCCTCTC TERM 447 314975 - 314992 + T 100 -9.9 -5.83822 | opp_overlap 314975 AGTGCATGTAAAAAA CTGCAAG TTGC CTTGCAG TTTTTTTTGCCTCTC CJA_0245 315127 - 315023 - | hypothetical protein aga27A 315172 - 316386 + | putative alpha-galactosidase, aga27A TERM 448 316402 - 316459 + T 87 -14.4 -2.85699 | opp_overlap 316422, overlap 316422 TCCCTTGTTGAATTG TTATTTCCCACATAAAAAAACGCCGC TGGAAT GCGGCGTTTTTTTATGTGGATAGCGA CTTTAATCGCTGAGT TERM 449 316439 - 316422 - T 100 -9.8 -5.71712 | opp_overlap 316422 316402 TCCCACATAAAAAAA CGCCGC TGGAAT GCGGCG TTTTTTTATGTGGAT TERM 450 316422 - 316439 + T 100 -9.8 -5.72616 | opp_overlap 316422, overlap 316402 TCCCACATAAAAAAA CGCCGC TGGAAT GCGGCG TTTTTTTATGTGGAT plt103B 317766 - 316462 - | peptidoglycan lytic transglycosylase, putative, plt103B TERM 451 316585 - 316605 + g 72 -5.5 -4.56597 | opp_overlap 316578, overlap 316603 GCCAAAAATGCCATC GGCTTTT TCGTGAT AAAAGCC TTTTTGGCCAAGGGC TERM 452 317011 - 317032 + g 70 -10.1 -3.25823 | overlap 317007 ACGCAAAAAATGGGC GGCCGATGC CATG GCATCGGGC TTGCTATGCCAAAGG TERM 453 317404 - 317382 - G 71 -9 -3.53224 | overlap 317361 317359 317358 GATGCGCCGCCCAAA GCGCACGGCC CTG GGCAACGCGC TGGGCGGTGACACGG TERM 454 317635 - 317647 + g 81 -10.5 -3.63073 | opp_overlap 317631 ACCCGTAGTAAGCGG CGCCG AGC CGGCG TTGTTAGCAGCTGTA TERM 455 318263 - 318275 + r 85 -6.3 -5.10033 | AGAGATAGAATGTCT TCGAT TTC ATCGA TTTTATTTATATTCG TERM 456 319209 - 319225 + r 70 -9.5 -3.0579 | overlap 319208 AGGATTCTCTCCAAC CCTTTTG ATT CAAAAGG CTTTTAGACAGATTT CJA_0248 319682 - 319437 - | Modulator of Rho-dependent transcription termination (ROF) superfamily algR 320442 - 319702 - | alginate biosynthesis regulatory protein AlgR algZ 321468 - 320449 - | AlgZ TERM 457 320603 - 320616 + g 79 -2.3 -5.1861 | GATTCGGGGGTGTCT TCTCC GACA GGTGA TTTTTTAGTGGTCGC TERM 458 321646 - 321666 + H 72 -8.9 -3.53012 | ATACTAGCTTATTCG CCGGTCGCG CAT TGTGGCCGG TTTAACAGCCGCGCC TERM 459 321677 - 321688 + G 90 -7.2 -5.10461 | overlap 321676 GCCGGTTTAACAGCC GCGC CTGT GCGC TTTTTCTTCGGTGGA argH 321659 - 323110 + | argininosuccinate lyase TERM 460 323134 - 323160 + F 100 -10.1 -5.54907 | overlap 323159 GCACCAGGATTCCAA TGCCGTGCCCT TCGCC GGGGTGCGGCA TTTTTATTTTATAAA CJA_0252 323323 - 323433 + | hypothetical protein TERM 461 324002 - 323968 - g 75 -5.1 -4.70319 | CCAGTAAAACCAAAA GCGAATTCC-TGGCGCG TAT CA-GCCATGAAATCCGC ACACCGATGAACGCG TERM 462 324271 - 324286 + G 71 -2.5 -5.00616 | gap 1, opp_overlap 324270, overlap 324270 TTGCCTACGATATAG CGCCGG ATGTG CCG-CG TTTTTTACGCGGCGA TERM 463 324488 - 324477 - g 70 -5.8 -4.19817 | CTCAGCCATGTAAAA GAGC GTTT GCTC AAGGGCAGCCAGGAG TERM 464 325136 - 325109 - g 77 -11.3 -3.13403 | gap 1, opp_overlap 325108 325109, overlap 325107 GGTGGGTGACGAAGA CCGTGCCG-CGC TCCTG GCATCGGCACGG GTATTGGTCGTTGAG CJA_0253 323562 - 325541 + | Response regulator receiver domain protein TERM 465 326495 - 326473 - g 73 -9 -3.59979 | opp_overlap 326459 326494 GGCGCTCAGCCTAAA GCGTGCGCTC TAT GAGCGCGAGC CGGATGTTGACCGGC TERM 466 327197 - 327184 - g 70 -6.7 -4.07885 | opp_overlap 327191 327194, overlap 327188 327191 CACCGCCCTGCAAAA GCAAC AACT GTTGC AGGCAATCCTGCAAT TERM 467 327217 - 327188 - g 73 -9.3 -3.66908 | opp_overlap 327191 327194, overlap 327184 327191 GCCCTGCAAAAGCAA CAACTGTTGCAGG CAAT CCTGCAATGGTTG CCTGAGCCGCATCAA CJA_0254 325559 - 327514 + | adenylate cyclase, class I TERM 468 328710 - 328733 + G 83 -12.4 -3.35996 | opp_overlap 328711, overlap 328711 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 469 328711 - 328732 + G 95 -15.9 -2.61383 | opp_overlap 328711, overlap 328710 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 470 328732 - 328711 - g 100 -15.9 -5.71983 | opp_overlap 328711 328710 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_0255 327588 - 328739 + | ISCja2, transposase TERM 471 328958 - 328969 + G 70 -4.4 -4.56597 | ACCGGCGATGAATTC TTGC TGCT GCAA TTTTTGCAACAACAG CJA_0256 328748 - 329761 + | putative adenylate cyclase glc13A 331606 - 329795 - | alpha glucosidase, putative, glc13A TERM 472 329839 - 329824 - G 77 -3.2 -5.093 | overlap 329826 TGGAAAACAATAAAA CCCCTT TTTC AAGGTG TCCGTGAACAATACA TERM 473 330234 - 330223 - G 72 -5.8 -4.35483 | CTTCACCATAATAAA GGGT TGGA ACCC CTGGATAAAAAAATA TERM 474 330963 - 330926 - G 78 -9.3 -3.93136 | opp_overlap 330926 330927, overlap 330927 330936 ACACTCATCCATAAA CTGATAAAAAGCCAGGT TTCC ACCAAGCTTTTCATCAA TTTCAAAGTAATTTT TERM 475 330962 - 330927 - G 71 -10.6 -2.954 | opp_overlap 330926 330927, overlap 330926 330936 CACTCATCCATAAAC TGATAAAAAGCCAGGT TTCC ACCAAGCTTTTCATCA ATTTCAAAGTAATTT TERM 476 330953 - 330936 - G 74 -3.3 -4.95896 | opp_overlap 330927 330926, overlap 330927 330926 ATAAACTGATAAAAA GCCAGGT TTCC ACCAAGC TTTTCATCAATTTCA CJA_0258 333727 - 332030 - | hypothetical protein TERM 477 332448 - 332462 + g 100 -5 -5.99154 | overlap 332446 AAAGAACAAATGGCA TGTGCA ACG TGTACA TTTTTTTCTTTAATA CJA_0259 336080 - 333768 - | efflux ABC transporter, permease protein phnL 336750 - 336073 - | ABC transporter, ATP-binding subunit CJA_0261 337935 - 336751 - | putative ABC transporter permease TERM 478 336820 - 336836 + g 93 -2.3 -5.66926 | TTCGTTACTTATTTC TTGAACT TTT ATTTCAA TTTTGTTTTTTTTAC TERM 479 337011 - 337025 + g 70 -5.8 -4.27483 | CATCCTTTATTTTGG CAATAA TTT TTATTG TTTGATTTTCTACCT TERM 480 337306 - 337317 + g 71 -3 -4.84921 | TAAAATACCAAGTTC TACA TTCA TGTA TTCTTTTTTATTCTG CJA_0262 339979 - 337937 - | ABC transporter, ATP-binding protein TERM 481 339547 - 339560 + g 75 -4.5 -4.82333 | opp_overlap 339547, overlap 339548 TTAGATGTAGATAAT CGGGA ATAA TCCTG TTTTTCCCTTGTTGT TERM 482 340175 - 340141 - R 70 -9.3 -3.39036 | gap 1, opp_overlap 340141 340135, overlap 340142 340145 ATAGATTATTCATAA TGTACACCTCCCTTCG AATA CGAAGGGAGG-GAACC ATCTGCTTATTTAAC TERM 483 340174 - 340142 - R 78 -12.8 -2.6294 | gap 1, opp_overlap 340141 340135, overlap 340141 340145 TAGATTATTCATAAT GTACACCTCCCTTCG AATA CGAAGGGAGG-GAAC CATCTGCTTATTTAA TERM 484 340171 - 340145 - R 81 -13.1 -2.60808 | gap 1, opp_overlap 340141 340135, overlap 340142 340141 ATTATTCATAATGTA CACCTCCCTTCG AATA CGAAGGGAGG-G AACCATCTGCTTATT CJA_0263 340353 - 340186 - | hypothetical protein TERM 485 340376 - 340400 + r 74 -3.5 -4.99043 | overlap 340378 TCCTGGTTTATTGGG TTGAGCCAAAA ATA TTTTGGCCCTG TTTTATTTGTCAGCC TERM 486 340378 - 340398 + r 76 -8.3 -4.11748 | overlap 340376 CTGGTTTATTGGGTT GAGCCAAAA ATA TTTTGGCCC TGTTTTATTTGTCAG CJA_0264 341323 - 340403 - | hypothetical protein CJA_0265 341553 - 341852 + | ISCja1, transposase orfA CJA_0266 341849 - 342709 + | ISCja1, transposase orfB CJA_0267 344576 - 343335 - | radical SAM domain protein protein TERM 487 344236 - 344258 + g 100 -9.4 -5.53079 | AATACAGCATTTGTT TGTATTTTAA AAT TTAAAATACA TTTTTTCTGTATTTT CJA_0268 345012 - 344590 - | hypothetical protein CJA_0269 345471 - 345701 + | adenylate cyclase CJA_0270 347812 - 346205 - | hypothetical protein TERM 488 347012 - 347001 - Gf 77 -3 -5.04385 | TAGAGCTTTAAAAAA TGTT CTTC AACA GATGTATCGGTTAAA CJA_0271 347112 - 347231 + | hypothetical protein gt1B 349173 - 347932 - | rhamnosyltransferase, putative, gt1B TERM 489 348176 - 348159 - G 75 -11.3 -2.94412 | opp_overlap 348155 348152, overlap 348156 348173 TGTAAGGTGAAATGA CCTGTGG AATA CCACAGG CTAGTGCTTGTGCGC CJA_0273 350430 - 349273 - | peptidase, rhomboid family TERM 490 349904 - 349890 - G 71 -2.1 -4.94902 | overlap 349891 TAATCATTATAAAAA CGACA GAGTA TGTCA CAAGCTGCTTGGAGC TERM 491 350412 - 350432 + g 74 -11.2 -3.23216 | opp_overlap 350412 AAAAGACTGAGAAAA GGGTGTCT ACGGG AGACACCC TTGATAGTACTAACC TERM 492 350432 - 350412 - G 95 -11.2 -4.49781 | opp_overlap 350412 AAAAGACTGAGAAAA GGGTGTCT ACGGG AGACACCC TTGATAGTACTAACC TERM 493 350896 - 350870 - R 76 -11.7 -2.64274 | opp_overlap 350867 350873, overlap 350867 350866 350873 ACTTTGTTAAATTTA TAAGTGTGACC TGCTT GGCCACACTTA TAGTGTCATAATGAA TERM 494 350893 - 350873 - R 70 -9 -3.47349 | opp_overlap 350873 350867, overlap 350870 350867 350866 TTGTTAAATTTATAA GTGTGACC TGCTT GGCCACAC TTATAGTGTCATAAT CJA_0274 353122 - 351365 - | putative toxin secretion ABC transporter, ATP-binding subunit/permease protein CJA_0275 354438 - 353122 - | putative toxin secretion, membrane fusion protein TERM 495 353931 - 353950 + g 72 -6.4 -4.43844 | opp_overlap 353934, overlap 353934 TGTGCTTAATGGATT CAATCTGC CGCC GCAGACTG TTTTCTCGATCCTGC TERM 496 354177 - 354206 + g 95 -10 -4.65263 | opp_overlap 354174, overlap 354171 ACAGCCTGACAACCC CGGTGGGTGGTT CTAACC AGCCAACCACCG TTTCTTTTCGCGCAT TERM 497 355390 - 355416 + G 83 -12.2 -3.4178 | overlap 355412 CGCCGTTGACCGGAA CTGGGCCTGGAA CGT TACCGGGCCCGG TTGTGGTCCGATGGT cbp6B 355028 - 356386 + | carbohydrate binding protein, putative, cbp6B TERM 498 356411 - 356442 + G 79 -12.4 -3.0976 | gap 1 GTCGCTATCCCGCCA TCCGTACCGG-AGGT AAA ACCTGCCTGTACGGA TGTTCCCCTCTTCAC CJA_0277 356387 - 357217 + | hypothetical protein CJA_0278 358696 - 357239 - | putative sensory box histidine kinase TERM 499 357592 - 357574 - G 81 -5.9 -4.84359 | TCACGCGCACAAAAA CCTGCTG CAATT CAGCGGG AAAGCAGGGGATTAA TERM 500 358603 - 358591 - G 70 -6.9 -4.11216 | TGTGGATGCTCAAAA GCGCC AGC AGCGC CATCAGTTGCTTCAT TERM 501 358647 - 358662 + g 78 -9 -3.86015 | opp_overlap 358660 GTGGATGACAGGTGG GGCTTG GCAG CAAGCC TTTGTAAAAGGGATC CJA_0279 359329 - 358811 - | hypothetical protein TERM 502 359138 - 359111 - G 78 -5.6 -4.75174 | opp_overlap 359110 CAGGTAATTGAAAAA GCCGAACAAT TCCTCGCG ATTGTGCGGC GTGAATTCGGGAAAG cebR 360473 - 359433 - | transcriptional regulator, LacI family TERM 503 360304 - 360316 + g 77 -3.3 -5.03747 | overlap 360299 360301 360305 TAATTCATCTCGCGC GCCAG CGC CTGGA TTTTTTCGCGCGTTT TERM 504 360475 - 360461 - G 91 -2.8 -5.50499 | overlap 360462 GTACATCCAAAAAAA CCATGA TTG TCATGC CATGGTATGAAAGCC CJA_0281 361751 - 360498 - | major facilitator family transporter TERM 505 361243 - 361266 + g 100 -14.6 -4.11692 | overlap 361244 AACAGCCAGTAGGTA TCCAGCCAGC CCAG GCTGGCTGGG TTTTGGGCATCGATA TERM 506 361244 - 361265 + g 95 -15.9 -3.06694 | overlap 361243 ACAGCCAGTAGGTAT CCAGCCAGC CCAG GCTGGCTGG GTTTTGGGCATCGAT TERM 507 361918 - 361970 + r 72 -5.9 -4.4009 | gap 1, opp_overlap 361914 361925 361932, overlap 361932 GAATTAAGTGATCGA TTACATATCAGCAATCGATTGCAA AAAGAA TTGCAATCGATTGCTAA-ATAAAA TTTTATCACCTAGCA TERM 508 361964 - 361925 - R 100 -17.5 -2.95298 | opp_overlap 361918 361932, overlap 361914 361932 GTGATCGATTACATA TCAGCAATCGATTGCAA AAAGAA TTGCAATCGATTGCTAA ATAAAATTTTATCAC TERM 509 361932 - 361957 + r 74 -10.6 -3.1876 | opp_overlap 361914 361925 361932, overlap 361918 ATTACATATCAGCAA TCGATTGCAA AAAGAA TTGCAATCGA TTGCTAAATAAAATT TERM 510 361957 - 361932 - R 74 -10.6 -3.26813 | opp_overlap 361932 361918, overlap 361914 361925 ATTACATATCAGCAA TCGATTGCAA AAAGAA TTGCAATCGA TTGCTAAATAAAATT CJA_0282 362049 - 361918 - | hypothetical protein TERM 511 362944 - 362914 - g 78 -5.3 -4.85599 | opp_overlap 362936 TGGATGGGATAAAAA CCGGCCTGGATGC CAGCT ACACCCAGGTGGG GCAGGCAAACCGCCT TERM 512 363520 - 363533 + G 70 -4.5 -4.52857 | opp_overlap 363531 ACGCCCTGGGCGATG CGCGT GAAA ATGCG TTTTATATCGCCGGT TERM 513 364354 - 364366 + G 72 -10.5 -3.09516 | opp_overlap 364331 GCGCCGTGGGCACCT CGGCC AAC GGCCG TTACATACTGCCGCG CJA_0283 362079 - 364415 + | TonB-dependent receptor TERM 514 364476 - 364445 - f 85 -12.3 -3.30731 | gap 1, opp_overlap 364442 364449, overlap 364443 TCAAGCAGTACAAGA GCGCTGCAC-CCGG GCCAT CCGGTGTGGAGCGC CGATGGTTCCGGAGC TERM 515 364509 - 364534 + F 78 -6.7 -4.62471 | overlap 364510 TGACTGCTTAGCACT TGGAGCCCGTC ACCA GGAGGGCTCCC TTTTTAAACCTTCAA TERM 516 364510 - 364533 + F 77 -10.2 -3.37 | overlap 364509 GACTGCTTAGCACTT GGAGCCCGTC ACCA GGAGGGCTCC CTTTTTAAACCTTCA TERM 517 364814 - 364837 + G 75 -5.3 -4.63932 | opp_overlap 364814 364817, overlap 364817 CCATGTCCGGCAACA GCAGGCG-GGT TTTG ACCTCGCC-GC TTTTGTTCACCGGTA TERM 518 365172 - 365188 + G 82 -7.9 -4.58663 | CGCACCTATTACGAG GGCCGCT CCC AGCCGCC TTTTTACGCCCTGAT TERM 519 365664 - 365693 + G 73 -11.4 -2.75074 | opp_overlap 365662 365661, overlap 365661 365683 CATTACTACCAATTG GCGGAGCAGCGC AAACAG GCGTTGCTGCGC TACTGTTGGAATGCG TERM 520 365775 - 365787 + G 74 -6.2 -4.48299 | overlap 365767 365766 GTCATGTCGCTGGCG GCGG TTTAC CCGC TTTATTTCAGTATGG TERM 521 365996 - 366020 + G 70 -10.8 -2.71712 | gap 1, opp_overlap 365994 365996, overlap 365995 GGAGCAGATCAAACA GCGCTGGATTG CACT CAA-CCAGCGC GTTTACCGCAACACC TERM 522 366020 - 365996 - g 78 -10.8 -3.51778 | gap 1, opp_overlap 365996 365995, overlap 365994 GGAGCAGATCAAACA GCGCTGGATTG CACT CAA-CCAGCGC GTTTACCGCAACACC tre37A 364569 - 366167 + | trehalase, putative, tre37A TERM 523 366242 - 366202 - T 78 -6.7 -4.65153 | opp_overlap 366206 TCACACAAAGGAAAA GCCGGGGGGATACTGGTGA TAG CCATCAAAATCCCCCTTGC TGAGCGGAACACCGG CJA_0285 366687 - 366187 - | hypothetical protein TERM 524 366682 - 366672 - G 74 -2.4 -5.12971 | opp_overlap 366672 AATAGCGAATAAAAA CCGG TAT CGGG TTCATCGGTGTCCTG cbbY 367360 - 366701 - | CbbY TERM 525 366921 - 366931 + g 70 -4.6 -4.48713 | GCCAGCAGGTAGCTA TCGG GAG CCGG TTTGTTATTGCTCAC TERM 526 366988 - 366974 - G 74 -10 -3.56099 | CACAATGGTGCTAAA CAGTGG CTG CCACTG GTAAGCGGCCAAGGT TERM 527 367658 - 367674 + G 70 -10.1 -3.21276 | overlap 367656 CGGTCGGGCTGGATG GCCCTGA TCC TCGGGGC TGTTATGGGGCAGGG TERM 528 368529 - 368550 + G 70 -3.5 -4.59853 | overlap 368533 AAGTGATACAGATCC GCGGCAGCG ATAA CGCCGGTGC TTTTTACGCGGTTCA hex20B 367619 - 370216 + | beta-hexaminidase, putative, hex20B TERM 529 370263 - 370292 + F 100 -15.1 -3.78775 | opp_overlap 370270, overlap 370264 370270 TGCCAGATAAATCCG ACAAAAAGCCCGC CTTG GCGGGCTTTTTGC TTTCATGATCGGGGC TERM 530 370264 - 370291 + F 100 -18.6 -2.87051 | opp_overlap 370270, overlap 370263 370270 GCCAGATAAATCCGA CAAAAAGCCCGC CTTG GCGGGCTTTTTG CTTTCATGATCGGGG TERM 531 370270 - 370285 + F 100 -11.8 -5.01811 | opp_overlap 370270, overlap 370264 370263 TAAATCCGACAAAAA GCCCGC CTTG GCGGGC TTTTTGCTTTCATGA TERM 532 370285 - 370270 - f 100 -11.8 -4.89393 | opp_overlap 370270 370264 370263 TAAATCCGACAAAAA GCCCGC CTTG GCGGGC TTTTTGCTTTCATGA CJA_0288 370520 - 370660 + | hypothetical protein TERM 533 370711 - 370740 + T 100 -22.3 -3.92522 | opp_overlap 370711, overlap 370714 TCAACCGAGATAAAA CAACCACTCCCGC TGCG GCGGGAGTGGTTG TTTATGGGGTTCACC TERM 534 370740 - 370711 - T 100 -22.3 -4.57474 | opp_overlap 370711 370714 TCAACCGAGATAAAA CAACCACTCCCGC TGCG GCGGGAGTGGTTG TTTATGGGGTTCACC TERM 535 370714 - 370737 + T 100 -18.2 -4.08948 | opp_overlap 370711, overlap 370711 ACCGAGATAAAACAA CCACTCCCGC TGCG GCGGGAGTGG TTGTTTATGGGGTTC CJA_0289 371350 - 370751 - | 5-formyltetrahydrofolate cyclo-ligase family protein TERM 536 371429 - 371395 - H 100 -18.9 -3.0558 | opp_overlap 371399, overlap 371399 GCACACCATAAACGA CAAAGGCCAAAAATC GCGAT GATTTTTGGCCTTTG GTACAGAAAGAAAAC TERM 537 371425 - 371399 - H 100 -13.9 -4.18303 | opp_overlap 371399, overlap 371395 ACCATAAACGACAAA GGCCAAAAATC GCGAT GATTTTTGGCC TTTGGTACAGAAAGA TERM 538 371399 - 371425 + H 100 -14.6 -3.72576 | opp_overlap 371399 371395 ACCATAAACGACAAA GGCCAAAAATCG CGA TGATTTTTGGCC TTTGGTACAGAAAGA CJA_0290 371532 - 371627 + | hypothetical protein TERM 539 371795 - 371812 + T 93 -14.1 -3.53761 | opp_overlap 371795 GGGCGCCAACAAAAA CGCCCGC TGCT GCGGGCG TTTCAGGGAGGATTG TERM 540 371812 - 371795 - T 100 -14.1 -5.06414 | opp_overlap 371795 GGGCGCCAACAAAAA CGCCCGC TGCT GCGGGCG TTTCAGGGAGGATTG CJA_0291 372159 - 371836 - | Family of unknown function (DUF710) superfamily CJA_0292 372391 - 372149 - | putative conserved hypothetical protein TIGR02449 TERM 541 372826 - 372848 + G 70 -10.6 -2.82327 | opp_overlap 372826, overlap 372825 372828 GCACCTTTATCACAA CACCTTGCAG GCA TTGCAGGGTG ATTTCAATCTCAAAC CJA_0293 372587 - 373195 + | yecA family protein pepP 373227 - 374543 + | aminopeptidase P II TERM 542 375442 - 375460 + G 100 -10.2 -5.00884 | GCTCCCATCTGGTGT TGCTCGGC AAT GCCGCGCA TTTTTTGCACCCGGT TERM 543 375801 - 375776 - g 75 -11.8 -3.01712 | TGGCGGTCGTCAATA CCGCTGGCGC GAAATG GTGCCAGCGG TTGCCGATGACCTGG TERM 544 375991 - 376001 + G 72 -8.2 -3.74251 | overlap 375992 ACTTGCCCGATTATG CCGG CAC CCGG TTTGATCCGCGTGTC ubiF 374550 - 377069 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase CJA_0296 377093 - 377608 + | Uncharacterized membrane protein TERM 545 378013 - 377997 - g 81 -6.5 -4.79223 | overlap 377999 378002 GCACAGGATGAAAAA CACGATG ATC CATCGGG GAGCAATATGCCTGA TERM 546 378011 - 377999 - g 74 -7.7 -4.01045 | overlap 377997 378002 ACAGGATGAAAAACA CGATG ATC CATCG GGGAGCAATATGCCT CJA_0297 377658 - 378032 + | hypothetical protein TERM 547 378244 - 378263 + F 70 -5 -4.44914 | ACAAGCTATATCACC CTGGCTTT TAGT AAAGTCGG TTATTTTGTTCGGTC TERM 548 378483 - 378465 - g 78 -8.2 -4.2573 | GAAAGAAGGCCAAAA GGTCACTT TCG AAGTAACC CAAGGCCAAAAAGGC CJA_0298 378301 - 378528 + | cold-shock domain family protein TERM 549 378534 - 378518 - f 79 -10.9 -3.37939 | overlap 378513 AAGCGGAAAACGTAA CTCCACT CTA AGTGGAG CTGAAACAAGGGGTG TERM 550 378541 - 378572 + F 100 -20.4 -4.11039 | opp_overlap 378541 378544, overlap 378544 TAAGTGGAGCTGAAA CAAGGGGTGATTGA GCAA TCAATCACCCCTTG TTGTTTGGTTCATCT TERM 551 378572 - 378541 - f 100 -20.4 -3.61103 | opp_overlap 378541 378544, overlap 378544 TAAGTGGAGCTGAAA CAAGGGGTGATTGA GCAA TCAATCACCCCTTG TTGTTTGGTTCATCT TERM 552 378544 - 378569 + F 100 -16.3 -4.15884 | opp_overlap 378541 378544, overlap 378541 GTGGAGCTGAAACAA GGGGTGATTGA GCAA TCAATCACCCC TTGTTGTTTGGTTCA TERM 553 378569 - 378544 - f 100 -16.3 -3.9392 | opp_overlap 378544 378541, overlap 378541 GTGGAGCTGAAACAA GGGGTGATTGA GCAA TCAATCACCCC TTGTTGTTTGGTTCA CJA_0299 378721 - 379038 + | hypothetical protein TERM 554 379433 - 379445 + G 71 -9.1 -3.53811 | AGCCAACGATTATTA CCCGA AGC TCGGG TTTACCCACAATCCG CJA_0300 379041 - 379490 + | acetyltransferase, GNAT family CJA_0301 379490 - 380050 + | hydrolase, NUDIX family TERM 555 380048 - 380068 + T 82 -6.8 -4.85782 | opp_overlap 380050 GCCCAGGGGTTAAGC TAGCGACC TTATT GGCCGCTA TTTATTTTTCCCCAG CJA_0302 380989 - 380066 - | hypothetical protein TERM 556 380213 - 380248 + g 77 -6.2 -4.7173 | overlap 380244 GCGTGCAATCGCACC TTCGGTATCCACTGTC ACGG GATAGCGGATGTTGAA TTTTTCGATGTACTC TERM 557 381070 - 381034 - R 95 -7.9 -5.28683 | opp_overlap 381066 ATGAACATTAAAAAA GCCACCCAGTAGACC GAGTAAA GGTCAATTGGGGGGC ATAACCTCTGTATAG CJA_0303 381826 - 381104 - | hypothetical protein TERM 558 381334 - 381347 + g 74 -8.1 -4.10161 | opp_overlap 381343 TTACCACCGCCCCTG CACCG ATAA CGGTG TTTTCACCGATGGTG CJA_0304 381876 - 382484 + | putative secreted protein CJA_0305 383391 - 382489 - | hypothetical protein TERM 559 384636 - 384666 + Gr 88 -12.7 -3.5518 | opp_overlap 384636 384637, overlap 384627 384637 TGCCCTTTGAAAAAA TCGGCAAAATCGA TATTT TCGATTTTGCCGC TTATGTCGCTGTTGA TERM 560 384666 - 384636 - gR 100 -12.7 -5.00616 | opp_overlap 384627 384636 384637, overlap 384637 TGCCCTTTGAAAAAA TCGGCAAAATCGA TATTT TCGATTTTGCCGC TTATGTCGCTGTTGA TERM 561 384637 - 384665 + Gr 100 -16.2 -2.72626 | opp_overlap 384636 384637, overlap 384627 384636 GCCCTTTGAAAAAAT CGGCAAAATCGA TATTT TCGATTTTGCCG CTTATGTCGCTGTTG TERM 562 384665 - 384637 - gR 100 -16.2 -3.60048 | opp_overlap 384627 384637 384636, overlap 384636 GCCCTTTGAAAAAAT CGGCAAAATCGA TATTT TCGATTTTGCCG CTTATGTCGCTGTTG TERM 563 384752 - 384734 - gR 100 -12.4 -4.68645 | opp_overlap 384733 384732 GAGGGAAAATTAAAA GGGCGCAA ATT TCGCGCCC GCTTGTGCTAATTGC CJA_0306 383354 - 384763 + | DbpA RNA binding domain family hslO 385719 - 384778 - | heat shock protein HSP33 CJA_0308 386135 - 385707 - | hypothetical protein TERM 564 385907 - 385919 + g 75 -4.8 -4.8622 | opp_overlap 385907 GTGCGTTATAAAAAT CCTG GTCGG CAGG TTTTTCCTTACGCAA hslR 386602 - 386153 - | heat shock protein 15 TERM 565 386252 - 386275 + g 85 -8.8 -4.56597 | overlap 386254 AATAAAGGCACCCAG CCCTGCCTTG CGCT CAAGGCGGCG TTTTTCGCGCAGGGC CJA_0310 387366 - 386587 - | HAD-superfamily hydrolase, subfamily IA, variant 3 TERM 566 387731 - 387747 + GH 77 -10.9 -3.19157 | CTATCGAGGTCGTTC CCTATCC GCT GGATAGG TTGCTGGAGTTGGTG nudE 387145 - 387855 + | ADP compounds hydrolase cysQ 387890 - 388765 + | 3'(2'),5'-bisphosphate nucleotidase CJA_0313 388932 - 389147 + | hypothetical protein CJA_0314 391090 - 389153 - | sensory box protein TERM 567 389210 - 389192 - G 85 -10.2 -4.18018 | GCGCTCCAGGGAAAA GCGCGGAT CAT AGCCGCGC AGACTGTTATTGAAC TERM 568 390316 - 390334 + g 90 -10.2 -4.3739 | opp_overlap 390306 ACTCATCGCCACCCA GGCGGCCG ATC TGGTCGCC TTTTCTCACCACATC TERM 569 390463 - 390446 - G 100 -5.5 -5.5353 | overlap 390455 CACATCAATAAAAAA CAGTGCA AAGC TGCGCTG GTAACGCTGCAGCCG TERM 570 391336 - 391355 + G 71 -2.8 -4.82667 | gap 1, overlap 391325 391337 AATTCTGGTGCGGGA C-CTATCCG CAG CGGTTAGTG TTTTTGGTGTGATGC CJA_0315 391230 - 391367 + | hypothetical protein TERM 571 391360 - 391418 + F 78 -11.6 -3.09492 | AGCGGTTAGTGTTTT TGGTGTGATGCCTATAGGCACCGGACGA TTA TTTTCCAGTGCCAACAGGCATCGCCCCC TATTGCCATTGGGAA TERM 572 391534 - 391509 - f 75 -9.9 -3.60627 | opp_overlap 391504 GTATTGGACGTGAAA TCACTATATAC AATG GTATATAGCGA AATTCAGTTGATGCG modA 391570 - 392379 + | molybdate ABC transporter, periplasmic molybdate-binding protein modB 392406 - 393101 + | molybdate ABC transporter, permease protein modC 393094 - 393738 + | ModC modE 394168 - 393743 - | MopB-like protein TERM 573 393992 - 394018 + gT 70 -10.1 -3.06796 | opp_overlap 394006 CATGCCCATTTGTTT GCCGGCGGC AGAGATGGA GCCGCTGGC TTCAATGGCATCCAG moaB1 394647 - 394132 - | molybdopterin biosynthetic protein B1 TERM 574 394727 - 394711 - R 73 -10.8 -2.97902 | opp_overlap 394709 394705 TAACAGCAGCACACA GGCGGC ATTTA GCCGCC GGTCATGTTCATAAA TERM 575 394756 - 394744 - R 70 -4.8 -4.38712 | GTCATGTTCATAAAA CGCA GTATT TGCG GCTCGTCGCCGGCCA moaA 395717 - 394719 - | Molybdenum cofactor biosynthesis protein A TERM 576 394837 - 394879 + g 77 -11.9 -3.16071 | gap 1, overlap 394835 394832 TTGCGCACAGCGTCG GCACTGGCTTCGCGCGCGCG CAGG TGCGCGCGCAGGTCCAG-GC TATGTTCCTGTCCCA TERM 577 395944 - 395965 + H 70 -2.2 -4.9448 | overlap 395945 ATGCAACTTGGTTGA TCACCGTG CACCTT CACTGTGG TTTTATTTGGTGCAT CJA_0322 396016 - 396117 + | hypothetical protein TERM 578 396864 - 396837 - g 81 -4.7 -5.04385 | CACATGCTGAAAAAA GCCTGGACCTG AATTGG CAGGCACTGGC CCAGCTCAATCACAC CJA_0323 396260 - 397162 + | uroporphyrin-III C-methyltransferase TERM 579 399517 - 399503 - g 81 -4.3 -5.06451 | GATTACCTGAAAAAA GTCAT TATCG ATGAC AGGTTGGGTATTGCC nirB 397217 - 399754 + | nitrite reductase [NAD(P)H], large subunit nirD 399776 - 400108 + | nitrite reductase [NAD(P)H], small subunit TERM 580 400167 - 400185 + T 100 -10.3 -5.31275 | TGAGTCGGCTTGACA GGCAACC CTCGT GGTTGCC TTTTTTATGGTCGCC CJA_0326 402418 - 400238 - | diguanylate cyclase (GGDEF) domain protein TERM 581 400475 - 400510 + g 76 -9.6 -3.78934 | gap 1, opp_overlap 400467 400470 CACAAATTCATCGCC GCCGATGCGTGCGACTG TGT CGGAAGCGCGCA-CGGC TTCTTGTAAGCGCAA TERM 582 401009 - 400987 - G 81 -13.4 -2.8294 | overlap 400984 TATTGCTGACAATCA CGCGCTTGCC GGT GGCAACCGCG GCACCGCAAGAACCT TERM 583 401083 - 401102 + g 78 -5.6 -4.78572 | AGTCGGGCAGGCTGG GTGCGGCG GCAA CGCTGAAC TTTTGTTGCTTGCGA CJA_0327 402851 - 402411 - | cytosine deaminase TERM 584 402960 - 402986 + r 78 -6.4 -4.57341 | overlap 402962 402964 GTGCCCGCTGCCTTT TCGCCCTGCCTG GGG CTGGCGGGCTGA TTTTTGAAGAGGCTT CJA_0328 404485 - 403031 - | Response regulator receiver domain protein CJA_0329 406337 - 404574 - | putative dual serine/threonine-protein kinase/phosphatase TERM 585 406346 - 406310 - G 100 -15.3 -3.72788 | opp_overlap 406314 406318, overlap 406311 406318 CGGGATAATACACAA TCAACAAACGTGCAGAA CGG TGCTGCACGTTTGTTGC TGCCCTTTTAGCTCA TERM 586 406345 - 406311 - G 100 -18.8 -2.83191 | opp_overlap 406314 406318, overlap 406310 406318 GGGATAATACACAAT CAACAAACGTGCAGAA CGG TGCTGCACGTTTGTTG CTGCCCTTTTAGCTC TERM 587 406314 - 406342 + g 95 -14.7 -3.21938 | opp_overlap 406311 406310 406318, overlap 406318 ATAATACACAATCAA CAAACGTGCAGAA CGG TGCTGCACGTTTG TTGCTGCCCTTTTAG TERM 588 406318 - 406338 + g 85 -9.7 -4.25458 | opp_overlap 406311 406310 406318, overlap 406314 TACACAATCAACAAA CGTGCAGAA CGG TGCTGCACG TTTGTTGCTGCCCTT TERM 589 406338 - 406318 - G 90 -9.7 -4.38203 | opp_overlap 406318 406314, overlap 406311 406310 TACACAATCAACAAA CGTGCAGAA CGG TGCTGCACG TTTGTTGCTGCCCTT CJA_0330 407829 - 406354 - | nitrate permease TERM 590 406894 - 406870 - GH 87 -5 -5.24129 | gap 1 GGTGCTCATAAAAAA CGCCGGCAGTA CCGA TACCA-CGGCG ATTTCGGAACCAAAG TERM 591 407176 - 407163 - GH 86 -3.9 -5.39721 | TCAGCACATAAAAAA CAAAA TCTT TTTTG CTGGTGACTTCCAGG TERM 592 407186 - 407199 + gH 82 -3.1 -5.22039 | gap 1 TTTTTGCTGGTGACT TCCAGG CCG CC-GGA TTTTTTGGGTTTGAA TERM 593 407885 - 407859 - gR 82 -2.2 -5.38249 | ACCAATCACAAAAAA TCCGATGACTAT GGC ATAGCCGCTGGA AAGTCACTATTTGGT CJA_0331 407820 - 408005 + | hypothetical protein CJA_0332 408711 - 408343 - | hypothetical protein CJA_0333 408981 - 409427 + | IS5 family transposase, orfA CJA_0334 409605 - 409904 + | IS3 family transposase, orfA CJA_0335 409901 - 410755 + | IS3 family transposase, orfB CJA_0336 412407 - 410842 - | IS66 family element, transposase TERM 594 411349 - 411362 + g 79 -2.3 -5.28176 | overlap 411340 TGCTTTGCCGGTTTT TCCCG CCTT CTGGA TTTTTTGTGCCTCGA CJA_0337 412790 - 412440 - | IS66 family element, Orf2 protein TERM 595 412759 - 412741 - G 72 -6.7 -4.28548 | ATCGATTTACGAAAA TCCACCG GCAGA CGATGGA CATAGACCGGTACAT CJA_0338 413101 - 412787 - | IS66 family element, Orf1 protein TERM 596 413238 - 413220 - R 77 -10.3 -3.36968 | opp_overlap 413219 413220 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA TERM 597 413220 - 413238 + r 72 -10.3 -2.78813 | opp_overlap 413220, overlap 413219 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_0339 413619 - 413272 - | hypothetical protein CJA_0340 413897 - 413574 - | hypothetical protein CJA_0341 415607 - 413922 - | Rhs family protein CJA_0342 416315 - 415626 - | hypothetical protein TERM 598 416281 - 416267 - G 70 -4.3 -4.47686 | opp_overlap 416267 TTATAAAAAAGTAAA GTGAA AATAG TTCAC TTATTGCAGCTATAA CJA_0343 428336 - 416340 - | RHS Repeat family TERM 599 419100 - 419118 + g 79 -10.2 -3.75169 | TTGCGCATTGATATT CAGCCAGG TGA CCTGGCCG TTTGGTGCAATGATC TERM 600 421567 - 421579 + g 73 -9.1 -3.61589 | GAACCGTAATCCGGT GCCTG TAA CAGGC TTACTTTGGTATTGG TERM 601 423426 - 423416 - G 70 -6.8 -4.04206 | TTACTGTTACAGAAA CAGC GTG GCTG CCGACCTGATGGGGT TERM 602 424512 - 424538 + g 87 -13.8 -3.10622 | AGGATTGAAATTTGC CTCACTGGTTGG ATT CCAGTCAGTGAG TGTTCCATCGGTATT CJA_0344 428711 - 429667 + | gluconolactonase precursor TERM 603 429652 - 429680 + F 85 -7.3 -4.99134 | overlap 429630 CCGCGAATGGGCTCT GTGGCGCCGGGAT TAG GTCCCGGTTCGAC TTTTTCCTTTGGGGT TERM 604 430396 - 430412 + G 100 -10.8 -5.40072 | ATAGTCCCGTTAACG CCGCCC GGTTA GGGCGG TTTTTTTCCGAGCGG dsd 429921 - 431216 + | D-serine deaminase TERM 605 431454 - 431421 - g 70 -6.6 -4.07568 | CCGGTGTGGGCAAAA CCCTGGGCCACATT GCGCTG ATTGTGGCGCTGGG TACCATGCTCGGCAA TERM 606 431574 - 431585 + G 95 -5.8 -5.42259 | overlap 431582 TTATCGCGTTTATTG TGGG GCTG CCCA TTTTTTTCGAAGTGG TERM 607 431582 - 431601 + G 72 -5 -4.71186 | overlap 431574 TTTATTGTGGGGCTG CCCATTTT TTTC GAAGTGGG TTTTGTATTGCTGAT CJA_0346 431225 - 432580 + | gluconate permease TERM 608 432913 - 432929 + GF 79 -7.9 -4.37886 | overlap 432912 432918 GTAGAGTCCACCCTG CGCGCCA ACC TCGCGCG TTTTGTCGAGGCTGA CJA_0347 432577 - 433461 + | transcriptional regulator, RpiR family TERM 609 433873 - 433891 + GF 71 -9.6 -3.19463 | GAATGAAATACAGCC TGCAGTCA ATG TGGCTGCA TTAGTCGGTCATACA TERM 610 434287 - 434252 - gf 80 -11.3 -3.40867 | gap 2, overlap 434285 GGACGCAGCAAGGAA GTGCTTG-GCGCC-CTG GAGA CAGCGGCGCGCAAACAC TGGGTCGGCAGCGAT ndeD 433418 - 434941 + | N-acyl-D-amino acid deacylase family protein CJA_0349 434950 - 435339 + | Endoribonuclease L-PSP superfamily TERM 611 436810 - 436790 - g 91 -5.3 -5.36441 | TCGCTATACAAAAAA TCGCGCGCA ATT TTCGCTCGA CACCTGGATGGGCCC hex20A 435336 - 437747 + | N-acetyl-beta-hexosaminidase, putative, hex20A CJA_0351 437776 - 437886 + | hypothetical protein TERM 612 438769 - 438752 - g 71 -2.7 -4.8543 | CAATTGGTAGAAAAA CTCCA GTCTTTTA TGGAG AGCAACAAGCCTTAC TERM 613 439041 - 439025 - g 71 -2.2 -5.0133 | overlap 439012 439027 CAGGCCTTTAAAAAA GCCGTA GGTGT TACGCC CAGCCATTACCGGCA CJA_0352 437915 - 439087 + | transcriptional regulator, AraC family domain protein TERM 614 442586 - 442598 + G 71 -9.1 -3.42056 | ACGCGTTAAGCTTTA CGACG GAT CGTCG TTATGCATTGAGCGT CJA_0353 439360 - 442629 + | TonB-dependent receptor TERM 615 442700 - 442677 - g 100 -14.6 -5.06414 | opp_overlap 442677 TGTTGTGAATAAAAA GCGCGCAGCA TTGT TACTGCGCGC TTTTTTTATGGTTGA TERM 616 442677 - 442700 + G 100 -12.4 -5.71983 | opp_overlap 442677 TGTTGTGAATAAAAA GCGCGCAGCA TTGT TACTGCGCGC TTTTTTTATGGTTGA TERM 617 443366 - 443381 + G 100 -3.3 -5.87996 | CGCTTAATAATGGCA TCACT ATTACC AGTGA TTTTTTTATTGATTG CJA_0354 442666 - 444258 + | tryptophan halogenase TERM 618 444742 - 444776 + G 73 -11.7 -2.67713 | gap 1, opp_overlap 444740, overlap 444739 444738 GGTAGGAAATGAAGG TATTGTCAGCGCGCAT TATG ATG-GTGCTGACAATA TCGCTTGTGTTGTCG TERM 619 444790 - 444804 + G 77 -7 -4.58303 | overlap 444796 TATCGCTTGTGTTGT CGCCGG GCG CAGGCG TTTTGTGCTGTTTCC CJA_0355 444293 - 445309 + | Pass1-related protein TERM 620 445320 - 445310 - f 80 -6.8 -4.63993 | AAGTTGAAAAAATAA TGGC TAT GCCA AGTGCCCAATAGTGA TERM 621 445634 - 445664 + G 90 -7.6 -4.80882 | overlap 445635 445636 GGGTTTGAATCCTAC TTTCATCCGTTTCC GGC GCAAACGGATGACG TTTTTACTGTCCCGT TERM 622 445636 - 445662 + G 76 -12.4 -2.68202 | overlap 445635 445634 GTTTGAATCCTACTT TCATCCGTTTCC GGC GCAAACGGATGA CGTTTTTACTGTCCC CJA_0356 445322 - 446845 + | tryptophan halogenase TERM 623 447075 - 447095 + T 100 -13.3 -5.25803 | GTTTTCTCCCGTTTG GCGGGTTCA GGT TGAGCCCGC TTTTTTATGGGGATT gt2K 449092 - 447137 - | glycosyl transferase, putative, gt2K mdoG 450710 - 449067 - | periplasmic glucans biosynthesis protein MdoG TERM 624 449378 - 449406 + g 100 -13.2 -4.13767 | TGGCACCCCAGCCGA TGCGGGTGCGAA TCACC TTGGCACCCGCA TTTTCAGGTAAAAAA TERM 625 450285 - 450264 - G 70 -3.7 -4.62336 | gap 1, overlap 450266 ATCGTAGTTGAAAAA CG-CCTGC TTAAATT GCAGGACG CTCTCCGGTGTATCG TERM 626 450926 - 450916 - H 80 -6.8 -4.58663 | opp_overlap 450915 ACCACTTTTGAAAAA CAGG CAT CCTG GTGTCGTTGCTGCAG TERM 627 451326 - 451310 - g 74 -7.9 -4.11216 | CGCCGAGCTGGAAAA GCGCCTG GAC CAGGTGC GTATCAGTACGCTGG TERM 628 451644 - 451634 - g 72 -6.8 -4.28548 | AGGTATCTATGAAAA GCTC TGG GAGC GCGCCTTTTTTGTGG TERM 629 452008 - 451996 - g 81 -9.1 -4.08216 | overlap 452000 CCAGTCGCGCCAAAA GCCAG TTC CTGGC AACCATGAGCCATGA TERM 630 452966 - 452976 + G 79 -2.4 -5.19879 | TGCCCCGGATTTTAC CGAG CTG CCCG TTTTTATGTTTAGCG mmoS 451161 - 453572 + | MmoS TERM 631 453569 - 453557 - f 73 -7.7 -4.14392 | CGTCAATCCGGAAAA TAGCG CAT CGCTA TAGTGGCCCCCTATA trx 453606 - 454022 + | thioredoxin TERM 632 454031 - 454054 + F 100 -13.2 -4.87389 | ACTGTAAGTTCCCGA TTGGGCTGTC GCAA GACGGCCCAA TTTGTTTTTGCACTA TERM 633 455162 - 455151 - g 87 -4.4 -5.31275 | GTTGAGCACAAAAAA GATG TGGT CATC CTGCTCGACTCCATT rho 454377 - 455636 + | transcription termination factor Rho TERM 634 456616 - 456630 + G 81 -9.2 -4.11216 | TGCACCCGGCGACAT GGCTCC CGA GGGGCC TTTTGGCGATCACAC TERM 635 457191 - 457158 - g 71 -9.6 -3.53343 | gap 1, overlap 457147 457159 AATGGCCCGGCGAAA CCCAGCGCGAATGGG GTACG CCCAT-CGCGATGGA GCAAGCGGTAAAAGA TERM 636 457190 - 457159 - g 70 -10.9 -2.71791 | gap 1, overlap 457147 457158 ATGGCCCGGCGAAAC CCAGCGCGAATGGG GTACG CCCAT-CGCGATGG AGCAAGCGGTAAAAG ubiD 455780 - 457261 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJA_0363 457638 - 457279 - | hypothetical protein TERM 637 457700 - 457684 - g 70 -3.7 -4.67552 | TGCAGCAAAAAATAA GCCAA ATGCCGA TTGGC GCGAAAATTATGTGA TERM 638 457786 - 457751 - g 83 -9.8 -4.07568 | gap 1, opp_overlap 457756, overlap 457721 457756 TGGTCCGCCCTAAAA GAAAACGCCATGC-CCA AAG TGGTGCAGGGCGTTTTT GGTGGGGAGGAAAAT TERM 639 457781 - 457756 - g 100 -9.7 -5.07652 | gap 1, opp_overlap 457756, overlap 457751 CGCCCTAAAAGAAAA CGCCATGC-CCA AAG TGGTGCAGGGCG TTTTTGGTGGGGAGG TERM 640 457756 - 457781 + G 95 -9.7 -4.72272 | gap 1, opp_overlap 457756 457751 CGCCCTAAAAGAAAA CGCCATGC-CCA AAG TGGTGCAGGGCG TTTTTGGTGGGGAGG CJA_0365 457664 - 457822 + | hypothetical protein CJA_0364 458604 - 457801 - | serine acetyltransferase TERM 641 459036 - 458983 - R 100 -20.9 -3.15544 | gap 1, opp_overlap 458984 458988 459002, overlap 458988 459004 GTTTAGTTTTATGAA TGAAATGCCTGGATAAAATAATATTG TGC CAATAT-ATTTTATCCAGGCATTTCT AGTTGGTTGATGCGC TERM 642 458984 - 459035 + r 100 -24.4 -2.85896 | gap 1, opp_overlap 458983 458988 459004, overlap 458988 459002 TTTAGTTTTATGAAT GAAATGCCTGGATAAAATAATATTG TGC CAATAT-ATTTTATCCAGGCATTTC TAGTTGGTTGATGCG TERM 643 458988 - 459031 + r 100 -19.4 -4.10331 | gap 1, opp_overlap 458983 458988 459004, overlap 458984 459002 GTTTTATGAATGAAA TGCCTGGATAAAATAATATTG TGC CAATAT-ATTTTATCCAGGCA TTTCTAGTTGGTTGA TERM 644 459031 - 458988 - R 100 -19.4 -3.95584 | gap 1, opp_overlap 458988 458984 459002, overlap 458983 459004 GTTTTATGAATGAAA TGCCTGGATAAAATAATATTG TGC CAATAT-ATTTTATCCAGGCA TTTCTAGTTGGTTGA CJA_0366 459860 - 459060 - | hypothetical protein CJA_0367 461532 - 460552 - | hypothetical protein TERM 645 460675 - 460663 - G 78 -10.5 -3.53761 | overlap 460664 GAAGTGCCGGGGAAA GGCCG GGT CGGCC CAGCGCCGCGCCAGC TERM 646 461016 - 460971 - G 83 -13.3 -3.02144 | TCACCCGTGCGAACA TCGCATCGCAGCCCTTGAGCA AATC TGCTCCCAGGCTGCGATAGGA TTCGCGCAGGCTTGC TERM 647 462435 - 462419 - g 75 -11.5 -2.85216 | opp_overlap 462419 462420 462421, overlap 462416 GACCAGTTACAATCA GCGCAGC CGC GCCGCGC TTGCCTATCTTGATT CJA_0368 461691 - 462500 + | ATPase, ParA family CJA_0369 462507 - 462986 + | hypothetical protein CJA_0370 464842 - 463490 - | Fic family protein TERM 648 463723 - 463749 + g 100 -13 -4.49556 | opp_overlap 463723 GATCTCGCCATACCA GCCTTGCCGGGT CGG GTTCGGCAAGGC TTTGTTTGATGGCCA TERM 649 464904 - 464880 - R 81 -13 -2.71144 | opp_overlap 464871 464869 464880 464897 464899 GATTTGGCGCAATTA TGGCGCAATT TTTGG AATTGCGCCA TTTTGTGGCGCTATT TERM 650 464880 - 464904 + r 100 -13.7 -4.39828 | opp_overlap 464880, overlap 464871 464869 464897 464899 GATTTGGCGCAATTA TGGCGCAATTT TTG GAATTGCGCCA TTTTGTGGCGCTATT TERM 651 464899 - 464915 + r 73 -10.1 -3.41569 | opp_overlap 464880, overlap 464880 464897 464906 GCAATTTTTGGAATT GCGCCAT TTT GTGGCGC TATTTGAATAAATAG CJA_0371 468029 - 464946 - | RND efflux transporter, permease protein TERM 652 466711 - 466697 - G 70 -5.7 -4.3586 | opp_overlap 466697 466695 GGATGGAGACGAAAA TCACC ACCAG GGTGA TATTCATGGCCAGCA TERM 653 467172 - 467197 + g 74 -8.3 -3.9941 | gap 1 GGCACCGGTCTGGCG GCTC-ACGGTCA GGG TGACCGCAGAGC TTTGGTTGTGGAAGC CJA_0372 471109 - 468026 - | RND transporter, Hydrophobe/Amphiphile Efflux family TERM 654 468111 - 468100 - G 70 -5.8 -4.17355 | CAAAGAACAAGTAAA CCAC CGGG GTGG TAAACAGGGTGAGCA CJA_0373 472321 - 471125 - | HlyD family secretion protein TERM 655 472695 - 472718 + H 74 -3.8 -5.09225 | CGCATCGTCTGAAAA CACCTGCATA TTAT TGTGGGGGTG TTTTTTACATCGGCT cel45A 472760 - 474295 + | cellulase, putative, cel45A TERM 656 474312 - 474334 + F 95 -13.5 -4.21812 | opp_overlap 474312 474316, overlap 474316 TGATTACACAGGATA GAAACGGCC CTTGT GGCCGTTTC TTATTTTAAGTACGC TERM 657 474334 - 474312 - f 82 -13.5 -2.89971 | opp_overlap 474312 474316, overlap 474316 TGATTACACAGGATA GAAACGGCC CTTGT GGCCGTTTC TTATTTTAAGTACGC TERM 658 474330 - 474316 - f 76 -8.5 -4.12475 | opp_overlap 474312 474316, overlap 474312 TACACAGGATAGAAA CGGCC CTTGT GGCCG TTTCTTATTTTAAGT TERM 659 474316 - 474330 + F 84 -8.5 -4.68601 | opp_overlap 474316 474312, overlap 474312 TACACAGGATAGAAA CGGCC CTTGT GGCCG TTTCTTATTTTAAGT ahpC 474559 - 475122 + | AhpC TERM 660 475167 - 475195 + F 79 -11 -3.30474 | opp_overlap 475154 475163, overlap 475168 AAGCAGGAAACGCCC AGCAGGCTCACT CACAA GGTGAGCCTGCA TTACTGATTATCACG TERM 661 475168 - 475194 + F 86 -14.5 -2.57963 | opp_overlap 475154 475163, overlap 475167 AGCAGGAAACGCCCA GCAGGCTCACT CACAA GGTGAGCCTGC ATTACTGATTATCAC TERM 662 475564 - 475575 + G 72 -4.4 -4.62102 | AATCAAAGCCATTGA TGGA CAGT TCCA TTTTGATATTTTTGT TERM 663 475925 - 475947 + G 75 -6.8 -4.30844 | GCGCGTAAAGGCATT CGCACGGGCG TTG TGGCCGAGCG TTTTGGTGGTCAGGT ahpF 475220 - 476770 + | AhpF TERM 664 476819 - 476774 - T 100 -14.3 -3.79113 | gap 1, opp_overlap 476778 476788, overlap 476778 476788 AGTGCGCCATAATAA TTA-ACCATAAAAAACGCGGTC ATG GGCCGCGTTTTTTATGGTGTTA GCTGGCATTTGAAAA TERM 665 476814 - 476778 - T 100 -21.1 -3.58208 | opp_overlap 476778 476788, overlap 476774 476788 CGCCATAATAATTAA CCATAAAAAACGCGGTC ATG GGCCGCGTTTTTTATGG TGTTAGCTGGCATTT TERM 666 476778 - 476814 + T 100 -23.3 -3.10071 | opp_overlap 476774 476778 476788, overlap 476788 CGCCATAATAATTAA CCATAAAAAACGCGGTC ATG GGCCGCGTTTTTTATGG TGTTAGCTGGCATTT TERM 667 476788 - 476804 + T 100 -11.5 -5.36965 | opp_overlap 476788 476778 476774, overlap 476778 ATTAACCATAAAAAA CGCGGTC ATG GGCCGCG TTTTTTATGGTGTTA TERM 668 476804 - 476788 - T 100 -9.3 -5.38249 | opp_overlap 476778 476788, overlap 476778 476774 ATTAACCATAAAAAA CGCGGTC ATG GGCCGCG TTTTTTATGGTGTTA CJA_0377 477845 - 476817 - | beta-1, 4-galactosyltransferase, putative, gt2a TERM 669 477382 - 477364 - G 82 -7.4 -4.56597 | TGGTGTTCGTAAAAA GCGATGAG TAT CTTATCGC TGTGGAAGATGCGCG TERM 670 477908 - 477881 - R 70 -2.1 -5.00616 | GTGGTTTCCAAAAAA GAATAATAAGG TTCTTT CGTTACTATTC TGTTTCTGGCAAAAA CJA_0378 478714 - 478085 - | Alpha/Beta hydrolase family of unknown function (DUF1234) family TERM 671 478665 - 478677 + g 86 -9.1 -4.30844 | opp_overlap 478665 GCATAGTTTGCTAAA GCCTG TGA CAGGC TTTTGGTAATGGAAT TERM 672 478677 - 478665 - G 71 -9.1 -3.55071 | opp_overlap 478665 GCATAGTTTGCTAAA GCCTG TGA CAGGC TTTTGGTAATGGAAT CJA_0379 479479 - 478871 - | probable homoserine/homoserine lactone efflux protein TERM 673 479305 - 479279 - G 70 -10.9 -2.74605 | overlap 479276 479296 479300 CGTGTGGAAAATCCA CTCAGCCTGGT GAATA ACAAGGCTGAG TCCCAGCGCTGAGAG CJA_0380 479611 - 479955 + | hypothetical protein CJA_0381 480125 - 479976 - | hypothetical protein TERM 674 480209 - 480231 + G 100 -12 -5.626 | TCTAGTATGGTCTTG GCCGACATCG TTA TGGTGTCGGC TTTTTTTATGGCCTG TERM 675 480285 - 480297 + G 88 -5.5 -5.26918 | opp_overlap 480285, overlap 480293 ATACAGCGTTGAAAA TGGCT CCC GGCCA TTTTTTATGGGCTAT CJA_0382 480200 - 480331 + | hypothetical protein TERM 676 480616 - 480587 - g 70 -4.4 -4.4767 | gap 1, overlap 480612 TCACCGAGGACAAAA CCGGCTTATTG GCCCGCCTG CAA-AAGCCGG GGGAAATTCCCAAGG TERM 677 480632 - 480612 - g 70 -6.7 -4.07568 | overlap 480587 GGCCCGCCTGCAAAA GCCGGGGGA AAT TCCCAAGGC GCGTCGTTCGCACGA CJA_0383 480370 - 480837 + | putative lipoprotein TERM 678 480884 - 480858 - T 100 -13.8 -4.59109 | opp_overlap 480858 480862, overlap 480862 TAGAGTTGGCAAAAA CAAAGGCGCC TTTTAGG GGCGCCTTTG TTTTTGGGGGAGGAC TERM 679 480858 - 480884 + T 100 -15.2 -4.56597 | opp_overlap 480858 480862, overlap 480862 TAGAGTTGGCAAAAA CAAAGGCGCCTT TTA GGGGCGCCTTTG TTTTTGGGGGAGGAC TERM 680 480862 - 480880 + T 100 -10.2 -4.85782 | opp_overlap 480858 480862, overlap 480858 GTTGGCAAAAACAAA GGCGCCTT TTA GGGGCGCC TTTGTTTTTGGGGGA TERM 681 480880 - 480862 - T 93 -8.8 -4.85782 | opp_overlap 480862 480858, overlap 480858 GTTGGCAAAAACAAA GGCGCC TTTTAGG GGCGCC TTTGTTTTTGGGGGA pel10C 482099 - 480900 - | pectate lyase, putative, pel10C TERM 682 481899 - 481919 + g 80 -5.3 -5.0133 | TAGCAATGGCTCTTT GAGGCCGCG TCG CTTGGCTTC TTTTTTAACGACCTC panB 483121 - 482279 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase CJA_0386 483830 - 483147 - | predicted deoxypurine kinase folK 484323 - 483844 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase pcnB 485693 - 484320 - | polynucleotide adenylyltransferase TERM 683 485128 - 485138 + g 90 -6.8 -5.09173 | opp_overlap 485126 485128 GGTTCACCAATAATA CGCA AGG TGCG TTTTTTCAGGTCTTC TERM 684 485793 - 485837 + r 71 -7.4 -3.92592 | gap 2, opp_overlap 485829 TTGATCTGTGGGCGG GTCTTCCC-CT-TGCTTTCC TTAACCC GGAAAGCAAAACGGGAAGAC TTTCGTCTTCCCGCT TERM 685 485850 - 485829 - R 100 -14.5 -4.55128 | opp_overlap 485793 ACCCGGAAAGCAAAA CGGGAAGAC TTTC GTCTTCCCG CTGGAGGGTAGCACC TERM 686 486500 - 486478 - R 88 -7.7 -5.03314 | gap 1, opp_overlap 486478 GTTATTGGCAAAAAA GCCCAC-GGC GATG ACCTGTGGGC TTTTGGGGGAGAGAG TERM 687 486478 - 486500 + r 76 -8.4 -4.07568 | opp_overlap 486478 GTTATTGGCAAAAAA GCCCACGG CGATGAC CTGTGGGC TTTTGGGGGAGAGAG CJA_0389 487924 - 486530 - | galR two-component system response regulator TERM 688 487256 - 487231 - G 76 -8.1 -4.2828 | overlap 487232 TCTCATCGAGGAAAA GGGTGCCACCG TCGG CGGCGGCTACC AGCCCTTCACGATTG TERM 689 487256 - 487232 - G 70 -10 -3.16647 | gap 1, overlap 487231 CTCATCGAGGAAAAG GGT-GCCACCG TCGG CGGCGGCTACC AGCCCTTCACGATTG TERM 690 487995 - 488025 + r 73 -11 -2.52795 | overlap 488005 TCAATGCCTTCCCCT GTCGGAGGCTCGCC ATT GGCGTGTCCTCGAC TCCATTGACAAGGTT galS 491008 - 488039 - | galS His Kinase A (phosphoacceptor) domain TERM 691 488401 - 488374 - G 74 -3.4 -4.92363 | gap 1, overlap 488375 488376 AAAGATTTATAAAAA CCTGGATGATGCG CTG CGCATCA-CCATC AACAATGGCACTTTT TERM 692 489073 - 489061 - G 82 -9.1 -4.20516 | opp_overlap 489048 489061 GGCCCAGCGAACAAA CTGCC AGG GGCAG TTCTTCCAGGGTTTT TERM 693 489061 - 489073 + g 73 -9.1 -3.64685 | opp_overlap 489061, overlap 489048 GGCCCAGCGAACAAA CTGCC AGG GGCAG TTCTTCCAGGGTTTT CJA_0391 491236 - 491054 - | hypothetical protein CJA_0392 492205 - 491267 - | glutamyl- and glutaminyl-tRNA synthetase TERM 694 491434 - 491450 + g 70 -4.4 -4.45945 | gap 1 CGGCTTGTGTATCGA CCA-GCG CTGG CGCCTGG TTTTGCTTGCTCAGT TERM 695 491553 - 491540 - G 77 -5.9 -4.66002 | GAGTAATAAAAAGAA GGCGA TTTG CCGCC CGGTAACCGCCAGCA CJA_0393 492783 - 492247 - | DnaK suppressor protein TERM 696 492387 - 492407 + g 77 -6.1 -4.71828 | overlap 492391 AATCGTCGTTTTCGA TCAGCTCCA GGG TGGAGTCGA TTTTCTTGATCAGCT TERM 697 492855 - 492870 + H 76 -4 -5.03314 | gap 1, overlap 492857 AGCTATCAGATTCAT CA-TGGC TGT GCCAGTG TTTTTTGGCGGTAGG sfsA 493010 - 493714 + | sugar fermentation stimulation protein CJA_0394 494634 - 493711 - | Permeases of the drug/metabolite transporter (DMT) superfamily TERM 698 494710 - 494684 - R 72 -10.2 -2.78679 | gap 1, opp_overlap 494682 494688 494705, overlap 494683 CGCGGGTAGGTAAAG CGCGGGGCGAT GCACTT ATCGCCCCG-G TGGAGTTTATTGCGG CJA_0396 495253 - 494717 - | putative lipoprotein TERM 699 494754 - 494764 + g 82 -3.2 -5.1963 | AGCAATTTGTTGAGG CTGT CAC GCAG TTTTTGTTCCTTGCC TERM 700 495041 - 495085 + g 76 -7.8 -4.15044 | overlap 495050 495050 GGTTGCCAGGCGATA GCCCTGGCGCAGCAGCTGTT CGTCC AGCAGCTGTTGTATTTGGGC TTTGTTGGCGCCGGC TERM 701 495050 - 495076 + g 71 -9.5 -3.45593 | overlap 495050 495041 GCGATAGCCCTGGCG CAGCAGCTGTT CGTCC AGCAGCTGTTG TATTTGGGCTTTGTT uppP 495470 - 496294 + | undecaprenyl-diphosphatase UppP amy13F 496406 - 498520 + | alpha amylase, putative, amy13F TERM 702 498967 - 498950 - g 74 -2.7 -5.00412 | opp_overlap 498951, overlap 498951 AAAGACAAGCAAAAA GTCGAAA TCTA TTTCGAT CCTGTCACTGGTGCG CJA_0399 498743 - 499009 + | hypothetical protein CJA_0400 499009 - 499548 + | cytochrome b561 family protein TERM 703 499542 - 499571 + T 100 -18.1 -4.86939 | opp_overlap 499550 CAACCTGCCTTCTGA CGATTAAACAGGC TTTC GCCTGTTTAATCG TTTTTCGCTTTATTC TERM 704 499563 - 499550 - T 72 -8.1 -3.78775 | opp_overlap 499542 CTTCTGACGATTAAA CAGGC TTTC GCCTG TTTAATCGTTTTTCG CJA_0401 501404 - 499581 - | hypothetical protein TERM 705 499630 - 499614 - G 86 -10.8 -3.90744 | opp_overlap 499622, overlap 499611 CTTGCTTTTAAAGAA GCGCCG CTCTT CGGCGC GCAGTTGATGCAGTC TERM 706 501638 - 501614 - R 76 -2.2 -5.4505 | gap 1 GTGTGCAACAAAAAA TCCA-CGAAAA AATC TTGTCGTTGGA GTTGCCTTTTTGCCT CJA_0402 502036 - 501653 - | hypothetical protein TERM 707 502220 - 502262 + G 73 -11.4 -2.56475 | opp_overlap 502230, overlap 502230 ATCATGGAAAATATG CATAAAAAAACGGCAGCTTA TTA TTGGCTGCCGTTTTTGAATG GTTGATGTGACCTTA TERM 708 502252 - 502230 - g 100 -7.7 -5.65177 | opp_overlap 502220 502230 ATATGCATAAAAAAA CGGCAGC TTATTATTG GCTGCCG TTTTTGAATGGTTGA TERM 709 502230 - 502252 + G 95 -9.8 -4.7078 | opp_overlap 502230, overlap 502220 ATATGCATAAAAAAA CGGCAGCTTA TTA TTGGCTGCCG TTTTTGAATGGTTGA CJA_0403 502148 - 502267 + | hypothetical protein hslU 503606 - 502284 - | heat shock protein HslVU, ATPase subunit HslU TERM 710 502879 - 502891 + g 70 -5.5 -4.37502 | overlap 502880 TTTTGCTCCACGGTT TCCAG GGC CTGGG TTTTAATGTCCTCCT TERM 711 503405 - 503376 - G 74 -8.5 -3.87815 | gap 1 CTCCACCTTGATAAA CGGCGCATTGGCCA GCT TGGCC-AGGCGGCG GGCGATTTCGGTTTT CJA_0405 504180 - 503656 - | peptidase, T1 family superfamily TERM 712 504048 - 504058 + g 85 -6.8 -4.82901 | overlap 504029 504027 CGCCCGCAAAGCCGG CCAG CAC CTGG TTTTTGTAGAGGCGG CJA_0406 504818 - 504270 - | Sporulation related repeat family TERM 713 504759 - 504738 - G 81 -10.2 -3.96148 | opp_overlap 504741 CCCGCCCACGATAAA CCATACCC AGCCGG GGGTATGG TTGCCAGTGCTGCTT TERM 714 504777 - 504793 + g 82 -2.1 -5.44721 | overlap 504769 GCCAGTGCTGCTTTT GCGGTTC GGT GATCGGC TTTTTTTGGCGTAGT priA 507073 - 504878 - | primosomal protein N` TERM 715 505018 - 505030 + g 72 -4.7 -4.68593 | opp_overlap 505019, overlap 505019 GAAGCTGGTAGCGAA AGCGG TCG CCGCG TTTTTCCATCATGGC TERM 716 505455 - 505437 - G 77 -8.8 -4.13014 | opp_overlap 505437 GTGACATCGGCAAAA TGGTGGCC TTT GGCCAGCA TTTGGGTACCGACCA TERM 717 506348 - 506329 - G 76 -10.7 -3.40403 | opp_overlap 506319 TTTCCGGTACCAGAA CCAGGGC TTGTTT GCCCTGG GTCAATACCTTCTCT hip 507207 - 507485 + | High potential iron-sulfur protein (HiPIP) rpmE 507595 - 507870 + | 50S ribosomal subunit protein L31 TERM 718 507906 - 507929 + G 100 -14.6 -5.626 | gap 1, opp_overlap 507906 CAAGCCATAAAAAAA CGCCGAGCGCC TTG GGC-CTCGGCG TTTTTTTATGGCGTA TERM 719 507929 - 507906 - g 100 -14.6 -5.66684 | gap 1, opp_overlap 507906 CAAGCCATAAAAAAA CGCCGAGCGCC TTG GGC-CTCGGCG TTTTTTTATGGCGTA TERM 720 507993 - 508005 + G 88 -5.5 -5.30686 | opp_overlap 507993, overlap 507982 508000 GTACGACATTGAAAA TGGCT CCC GGCCA TTTTTTATGGCTGTT TERM 721 508657 - 508647 - g 72 -6.8 -4.18094 | CAAATGACTGGAAAA GCCT GAA AGGC AAGTCCCTCGAAGTC CJA_0410 507875 - 508765 + | staphylococcal nuclease homolog gt51D 511241 - 508779 - | murein polymerase, putative, gt51D TERM 722 509634 - 509618 - G 78 -9.4 -3.91897 | TGCGCGAGCGATAAA GCGCCT GGCGT AGGCGC ATAGGGCCGACAAAT TERM 723 511234 - 511250 + g 74 -2.1 -5.04356 | AAGACGCTTCGGAAG GCCGGCA TTA TACGGGC TTTTTAGTTGTTTAC TERM 724 511431 - 511456 + G 74 -10.5 -3.13432 | gap 1 AAAGCTGTTAGAGCT CACGCGTAGCGG AGA CCGCTAT-CGTG TTGAATCCTATTCCG pilM 511345 - 512412 + | type IV pilus assembly protein PilM TERM 725 512958 - 512941 - g 77 -9.9 -3.65714 | overlap 512929 512943 AAATGACAGTGCAAA CATCAGC ACCA GCTGATG CTGATCCTGCAGCTG pilN 512412 - 513002 + | type 4 fimbrial biogenesis protein PilN TERM 726 513209 - 513199 - g 70 -4.6 -4.45664 | CGAAGCTAAGGAAAA GACG CTT CGCC AAACTTTCCAGACCA pilO 513002 - 513655 + | pilO pilP 513652 - 514176 + | type IV pilus biogenesis protein PilP CJA_0416 514213 - 516357 + | fimbrial assembly protein PilQ TERM 727 516379 - 516405 + G 100 -16.6 -2.85351 | overlap 516393 AAATCCAACGTTTTC CTTGTCGGCCCT ATG GGGGCCGGCAAG TCTACTATCGGCCGC TERM 728 516406 - 516440 + G 71 -2.8 -4.78848 | gap 1, overlap 516393 516411 516412 ATGGGGGCCGGCAAG TCTACTATCGGCCGC CTGCTT GCGGCCGA-GCTTGA TTTTGTGTTTCGCGA TERM 729 516724 - 516711 - g 73 -3.7 -4.82901 | TGCCCGGGATAAAAA GCGGC CTCT GCTGC AGGTTGAAAATCCAC CJA_0417 516358 - 516882 + | shikimate kinase aroB 517026 - 518117 + | 3-dehydroquinate synthase CJA_0419 518261 - 519805 + | hypothetical protein TERM 730 519861 - 519806 - T 86 -11.9 -3.61398 | opp_overlap 519807 519826 519853 519857, overlap 519807 519810 519826 CGCGCTGCGCAATAA TGGATTCCCCTACTAAAAAACGCGG TCCGGG CCGCGTTTTTTAGTAGGGGGTAACG CTGGTTATTCCTCGC TERM 731 519860 - 519807 - T 93 -15.4 -2.76696 | opp_overlap 519807 519826 519853 519857, overlap 519806 519810 519826 GCGCTGCGCAATAAT GGATTCCCCTACTAAAAAACGCGG TCCGGG CCGCGTTTTTTAGTAGGGGGTAAC GCTGGTTATTCCTCG TERM 732 519807 - 519862 + T 100 -16.5 -2.96517 | gap 2, opp_overlap 519807 519806 519810 519826, overlap 519826 519853 519857 GCGCTGCGCAATAAT G-GAT-TCCCCTACTAAAAAACGCGGT CCGG GCCGCGTTTTTTAGTAGGGGGTAACGC TGGTTATTCCTCGCT TERM 733 519857 - 519810 - T 100 -20.1 -2.6563 | opp_overlap 519807 519826 519853, overlap 519807 519806 519826 CTGCGCAATAATGGA TTCCCCTACTAAAAAACGCGG TCCGGG CCGCGTTTTTTAGTAGGGGGT AACGCTGGTTATTCC TERM 734 519841 - 519826 - T 91 -7.5 -5.14563 | opp_overlap 519807 519826, overlap 519810 519807 519806 TCCCCTACTAAAAAA CGCGG TCCGGG CCGCG TTTTTTAGTAGGGGG TERM 735 519826 - 519841 + T 100 -8.2 -5.14563 | opp_overlap 519826 519810 519807 519806, overlap 519807 TCCCCTACTAAAAAA CGCGGT CCGG GCCGCG TTTTTTAGTAGGGGG gcvH 520258 - 519866 - | glycine cleavage system H protein TERM 736 520322 - 520306 - R 76 -9.4 -3.72576 | GTTCGGGGGATTAAA CCAGGG CTTTT CCCTGG CGTACAAAACCGGGG gcvT 521416 - 520301 - | glycine cleavage system T protein TERM 737 520457 - 520445 - G 71 -9.1 -3.44793 | overlap 520443 CAGAGCAATAGAATA GCCCA AGC TGGGC GAAAATGTCCCGCTG TERM 738 521033 - 521056 + g 72 -4.5 -4.65168 | overlap 521035 CTGGTAGTTGTTTGC TACCTGGCT CATCCA GGCCAGGTC TTTTTCGCGTGTACT TERM 739 521523 - 521501 - R 100 -16.3 -3.61178 | TGCAGCCAGTGCAAA TGCCCCGGC GAGTG GCCGGGGCA GGGCTGTGGATGCTA CJA_0422 522105 - 521536 - | YbcL CJA_0423 523155 - 522133 - | hypothetical protein TERM 740 522300 - 522271 - G 70 -6.3 -4.1552 | overlap 522272 CATCTCGTCAATAAA CGCCTCCGCCG GCTGATCG CGGCTCAGGCG CAATGCCGGTGGATA CJA_0424 524558 - 523152 - | trypsin domain protein TERM 741 524138 - 524091 - G 81 -11.2 -3.66178 | gap 1, overlap 524123 TTCGGTAATGGTAAA GCCCAGGTCGAGCGG-ATTGCCC AGG GAGTAAAGCCGCTCGCCCTGGTC GAGCTTGGCGAGATC TERM 742 524191 - 524178 - G 77 -5.9 -4.70659 | CGGTATATGGAAAAA GCCAC TGCC GCGGC GATCCACCCGCACAA TERM 743 524248 - 524269 + g 72 -4.3 -4.66537 | overlap 524230 524251 GCCAGCAATTCAATG CTGCCGCTG TTGC CATCGGTGG TTTTGTATTGGCCCA TERM 744 524379 - 524364 - G 70 -3.9 -4.72272 | GGTGCCGATCAAAAA GCCGG AGCCAA CCGAC GACTGGCTATCCCCA CJA_0425 525410 - 524652 - | competence protein ComF bioB 525588 - 526688 + | biotin synthase TERM 745 526785 - 526749 - g 100 -14.3 -3.74251 | overlap 526750 CACATCTTGACCAAA CCCTGGCTGCGGCGCTC AGC GAGCGCCGCGCCCAGTA CCGCTATCGCCAGCG TERM 746 526783 - 526750 - g 100 -16.7 -2.84229 | gap 1, overlap 526749 ACATCTTGACCAAAC CCTGGCTGCGGCGCTC AGC GAGCGCCGC-GCCCAG TACCGCTATCGCCAG TERM 747 527030 - 527041 + G 70 -5.8 -4.17048 | opp_overlap 527008 527006, overlap 527023 527024 GCGTTTACCGGGCGC CAGC GCGC GCTG TTATTTTCCACCGGC bioF 526721 - 527923 + | 8-amino-7-oxononanoate synthase TERM 748 528696 - 528668 - g 81 -5.9 -4.82901 | overlap 528669 GGCCGTGGATAAAAA GCGCGTTGCCCAA TCC TTTGGCAAGGCGG CAGCCACCTACGATT TERM 749 528695 - 528669 - g 71 -9.4 -3.49419 | overlap 528668 GCCGTGGATAAAAAG CGCGTTGCCCAA TCC TTTGGCAAGGCG GCAGCCACCTACGAT bioC 527916 - 529424 + | biotin biosynthesis protein BioC TERM 750 529520 - 529496 - g 70 -6.9 -4.09243 | overlap 529497 CAGACGCTGGCAAAA CCCTGGTGGCC ACA GGCCTCCTGGC CGCTGCGCGCCTGCG bioD 529444 - 530130 + | dethiobiotin synthase CJA_0430 530133 - 530831 + | putative lipoprotein TERM 751 530874 - 530892 + F 77 -3.7 -5.252 | overlap 530872 TTAAAAGCGGCAAGC CGGGCGG CAATT CCGGCTG TTTTTTGTGCGCATA TERM 752 531032 - 531059 + G 88 -12.1 -3.68738 | opp_overlap 531030 CAGTGGTTAACCAGG GCCTGATTGGT ATGCAA ACCAGTCAGGC TTCTATGTTGCAATC CJA_0431 531004 - 531270 + | Domain of unknown function (DUF1078) family TERM 753 532036 - 532073 + G 76 -12.6 -2.52023 | overlap 532035 532033 532040 GTTGGATCAGCGTCG TGCGCGGGCGGACCTG TTTAAC CAGGCCAGCCAGCGCA ATATTGATATCAATC CJA_0432 531284 - 532159 + | srpA-related protein TERM 754 532407 - 532393 - f 74 -8.5 -3.85698 | opp_overlap 532393 GGTTCGCGTCAGAAA GCCCC TTTTT GGGGC TTTTTTGTATTTGTT TERM 755 532393 - 532407 + F 100 -8.5 -5.61913 | opp_overlap 532393 GGTTCGCGTCAGAAA GCCCC TTTTT GGGGC TTTTTTGTATTTGTT TERM 756 532495 - 532509 + G 100 -11.4 -5.46706 | opp_overlap 532495 CTGTAATCGTTGAAA TGGGCC TTG GGCCCA TTTTTGTTTTCAGGT TERM 757 532509 - 532495 - g 85 -11.4 -3.57561 | opp_overlap 532495 CTGTAATCGTTGAAA TGGGCC TTG GGCCCA TTTTTGTTTTCAGGT CJA_0434 532489 - 533079 + | Uncharacterized BCR, YhbC family TERM 758 533629 - 533618 - g 74 -2.2 -5.1287 | GGTACAGTGAAAAAA GTCA CGCG CGAC AGCATTATTGTTGAC nusA 533180 - 534661 + | N utilization substance protein A TERM 759 535544 - 535518 - g 75 -4.4 -4.84359 | opp_overlap 535518 535519 535521, overlap 535519 CCACGGCCACAAAAA GCATCATCACGG TCG CAATGATGATGA TTTCGATGATGACAG TERM 760 535629 - 535606 - g 77 -3 -5.03747 | overlap 535608 AAAGCTGTGAAAAAA GCGGCTGCTC CCAA GAAAAGCAGC AAAATTGATTTACTC infB 534715 - 537507 + | translation initiation factor IF-2 TERM 761 537525 - 537554 + F 84 -8.5 -4.68601 | gap 1, overlap 537527 GGTGCGCTGCTTTCA GGCCC-CAGCCCTG TCA CAGGGGTGTGGGGC TTTGTTGTTTTAACT rbfA 537609 - 538019 + | ribosome-binding factor A truB 538019 - 538978 + | tRNA pseudouridine synthase B rpsO 539133 - 539402 + | ribosomal protein S15 TERM 762 539413 - 539431 + F 100 -16 -5.07652 | GCTAGTTGTGTCCCT GTGCCCGC TTT GCGGGCAC TTTTCTTTTGGCCAC CJA_0440 539639 - 541771 + | polyribonucleotide nucleotidyltransferase TERM 763 541784 - 541834 + T 100 -17.9 -3.79419 | gap 1, opp_overlap 541801, overlap 541787 541801 TAATCGTGTGTTTAT CTGCTCCATAAAAAAAACGCCCGC ATTT GCGGGCGTTTTTTTTATGGT-TGG TCTTTTATGCCACAC TERM 764 541787 - 541833 + T 100 -20.5 -2.8733 | gap 1, opp_overlap 541801, overlap 541784 541801 TCGTGTGTTTATCTG C-TCCATAAAAAAAACGCCCGC ATTT GCGGGCGTTTTTTTTATGGTTG GTCTTTTATGCCACA TERM 765 541818 - 541801 - T 100 -14.1 -5.93809 | opp_overlap 541787 541784 541801 GCTCCATAAAAAAAA CGCCCGC ATTT GCGGGCG TTTTTTTTATGGTTG TERM 766 541801 - 541818 + T 100 -14.1 -6.02345 | opp_overlap 541801, overlap 541787 541784 GCTCCATAAAAAAAA CGCCCGC ATTT GCGGGCG TTTTTTTTATGGTTG CJA_0441 543439 - 541871 - | hypothetical protein TERM 767 542369 - 542357 - G 70 -6.9 -4.08958 | opp_overlap 542357 542354, overlap 542338 AGCCCCAAAGAATAA CCAGG ATG CCCGG TTGTATTCGCTATCA TERM 768 542960 - 542984 + g 83 -12.1 -3.35679 | overlap 542962 GAGTTGTACATCCTG CCCCAGTGCAC TAA GTGCGCTGGTG TTATCACTCCAAAAG TERM 769 542962 - 542982 + g 85 -13.3 -3.24924 | overlap 542960 GTTGTACATCCTGCC CCAGTGCAC TAA GTGCGCTGG TGTTATCACTCCAAA TERM 770 543459 - 543509 + r 86 -14.9 -2.66316 | gap 1, opp_overlap 543478 543479, overlap 543460 543479 TTAATACCGGCTCAC TGCATCGCAAGGTTACTAACCCGG ATGA CCCGGTTAGTAACCTTGCGCA-CA TGCTATAGTACAGGC TERM 771 543460 - 543512 + r 82 -13.1 -2.78384 | gap 3, opp_overlap 543478 543479, overlap 543459 543479 TAATACCGGCTCACT GCAT---CGCAAGGTTACTAACCCGG ATGA CCCGGTTAGTAACCTTGCGCACATGC TATAGTACAGGCGGA CJA_0442 544824 - 543529 - | AmpG protein, beta-lactamase induction signal transducer TERM 772 544462 - 544452 - G 70 -6.8 -4.053 | opp_overlap 544451 544451 544446, overlap 544441 544455 ATGAGGTGACATAAA CACC ATC GGTG GTGATGTCCTGTGAG TERM 773 545055 - 545081 + r 100 -17.4 -3.35197 | TTATGGGCCGGCTAA TCCCATCCACTG TTG CGGTGGATGGGA TTGATCTCTCTCACA ppa 545659 - 545126 - | inorganic pyrophosphatase CJA_0444 546576 - 545752 - | FHA domain protein TERM 774 546677 - 546702 + G 88 -5.5 -5.30199 | gap 1, overlap 546667 546665 546677 546678 AATTGGCGCCTGTCG T-CGCTATTTGG CAG CCGAATGGCGCA TTTTTGTTGATTTTT TERM 775 546678 - 546700 + G 70 -10.6 -2.82235 | overlap 546667 546665 546677 546677 ATTGGCGCCTGTCGT CGCTATTTGG CAG CCGAATGGCG CATTTTTGTTGATTT CJA_0445 546664 - 547125 + | Selenoprotein W-related family TERM 776 549038 - 549025 - g 85 -6.7 -4.82667 | overlap 549029 GGATCAGATCAAAAA GGTAC AGGA GTACC TGGAAACCCTGCCAG CJA_0446 547268 - 549862 + | hypothetical protein TERM 777 549896 - 549881 - T 82 -6 -5.12068 | opp_overlap 549881, overlap 549882 GATAGTGAATAAAAA GGGCGC ATCA GCGCCA CTGCTGTCCCATAGT TERM 778 549895 - 549882 - T 79 -9.5 -3.66156 | opp_overlap 549881, overlap 549881 ATAGTGAATAAAAAG GGCGC ATCA GCGCC ACTGCTGTCCCATAG TERM 779 549946 - 549923 - T 85 -12.4 -3.35996 | opp_overlap 549924, overlap 549924 TAGTTCTACTCATAA GGCGAGCCTC ATTT GAGGCTCGCT TTTTTTATGATTCGG TERM 780 549924 - 549945 + T 100 -15.9 -5.71983 | opp_overlap 549923 549924 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG TERM 781 549945 - 549924 - T 90 -15.9 -2.61383 | opp_overlap 549924, overlap 549923 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG CJA_0447 551068 - 549917 - | ISCja2, transposase CJA_0448 552218 - 551202 - | hypothetical protein CJA_0449 552226 - 552648 + | hypothetical protein axe2C 553997 - 552921 - | xylan esterase, putative, axe2C TERM 782 553459 - 553470 + g 86 -5.8 -5.0916 | GACTCGCGCGCATTC CACC AACG GGTG TTTTTGTCTTCACCG TERM 783 553608 - 553620 + g 81 -9.1 -4.08216 | TTGTTTAAGCGTAAC CTGGC CAT GCCAG TTTTCCGAGCGGTGG TERM 784 554053 - 554033 - R 74 -8.3 -3.97446 | opp_overlap 554051 AGAAAGAAAGCGAAA GGGACAG CGGTTGT CTGTCCC CGCACAGCTGGGTGC CJA_0451 554676 - 554068 - | mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) holA 555990 - 554941 - | DNA polymerase III, delta subunit TERM 785 555391 - 555429 + g 71 -3.3 -4.82855 | gap 2, overlap 555359 555412 555425 GGCTGATGCCATCAG CTCATAGTTGATGCGCC CCTGGTT GGCG-AGCAACT-TGAG TTTTTCAATTTCCTG TERM 786 556001 - 556015 + r 91 -7.8 -5.1861 | overlap 556002 GGCATGATGGTCAAT TGGCCT TGG AGGCCG TTTTTTCCTGATAGG TERM 787 556002 - 556014 + r 76 -9.1 -3.70443 | overlap 556001 GCATGATGGTCAATT GGCCT TGG AGGCC GTTTTTTCCTGATAG CJA_0453 556532 - 555996 - | putative rare lipoprotein B precursor TERM 788 556537 - 556556 + r 72 -4.8 -4.64844 | opp_overlap 556538, overlap 556538 GCAACAACCATACAA AGGCGGAC ATCT GCCCGCCG TTTTATGTGTGTGCA TERM 789 556555 - 556538 - R 87 -10.5 -4.17263 | opp_overlap 556538 556537 CAACAACCATACAAA GGCGGAC ATCT GCCCGCC GTTTTATGTGTGTGC leuS 559171 - 556577 - | leucyl-tRNA synthetase TERM 790 557049 - 557065 + g 80 -5.1 -4.90906 | overlap 557051 557059 TGGATAGTCTCGTGG GTTTTGC GGC GCAAATC TTTTTGCTGTTGTGG TERM 791 558773 - 558758 - G 82 -3.2 -5.18357 | CAAGCGAGTAAAAAA CCACTG CTCC CACTGG TAATACTCGGGTTTG TERM 792 559312 - 559300 - H 73 -10.5 -3.05463 | opp_overlap 559295 559295 ATGCTGCTCACCCAA CGGCC ATA GGCCG AGGAGGTTTACCATG CJA_0455 559325 - 559660 + | hypothetical protein TERM 793 559746 - 559759 + F 74 -3.8 -4.96848 | opp_overlap 559732 ATTGTCCCGACAAGG GCCA AGGTGA TGGC TTTTTGTATCCGGGA TERM 794 559853 - 559870 + G 72 -8.4 -3.83768 | overlap 559866 TGCCTGCGAATTATC GCCAGC CGTGGT GCTGGC TTTGCCTGTTGTTTT CJA_0456 559837 - 560769 + | endo-1,4-beta-xylanase B TERM 795 560816 - 560844 + T 71 -10.3 -2.73875 | overlap 560813 560816 GGTGACTACCAGTGA TGCTGTAGGGC ATTTATG GCCCCACAGCA TAGTATTGAAGGGGA aquI 563010 - 560863 - | aqualysin precursor TERM 796 563077 - 563063 - H 83 -10 -4.0162 | TCCGGACACCACAAA GCCATG CTC CATGGC GGTCGGACGCTACAA TERM 797 563135 - 563152 + H 93 -9.1 -4.81163 | GCGCTGCTGATAGTG GGGCGGT TGTT ACCGCTC TTTTGTTACTATTTG rplU 563502 - 563819 + | ribosomal protein L21 rpmA 563834 - 564091 + | ribosomal protein L27 TERM 798 564140 - 564172 + F 100 -13.5 -4.83615 | opp_overlap 564140 564145, overlap 564145 GTTGCCACACAACAA TAAAAGCCCTGTCGT CTT GCGCCAGGGCTTTTG TTTTTCTACGAAATA TERM 799 564172 - 564140 - f 84 -10.6 -3.88232 | opp_overlap 564140 564145, overlap 564145 GTTGCCACACAACAA TAAAAGCCCTGTCG TCTTG CGCCAGGGCTTTTG TTTTTCTACGAAATA TERM 800 564145 - 564167 + F 100 -11.2 -5.35224 | opp_overlap 564140 564145, overlap 564140 CACACAACAATAAAA GCCCTGTCGT CTT GCGCCAGGGC TTTTGTTTTTCTACG TERM 801 564167 - 564145 - f 100 -10.5 -4.97957 | opp_overlap 564145 564140, overlap 564140 CACACAACAATAAAA GCCCTGTCG TCTTG CGCCAGGGC TTTTGTTTTTCTACG TERM 802 564321 - 564310 - g 71 -3 -4.8622 | TTCCGCAAGGAAAAA TTTG TTGC CAAA GGTGGCCCCGATGGC TERM 803 564577 - 564591 + G 76 -9.2 -3.82218 | opp_overlap 564577, overlap 564572 GGCCAGCGGCTCAAA GTCGCC CAG GGCGGC TTTCATGGTCTGGGT CJA_0460 564229 - 565425 + | GTP1/OBG family TERM 804 565904 - 565916 + G 74 -7.7 -4.11216 | opp_overlap 565895 565893 565904 ACGACACCGTAGTAA CGGAT GAA ATCCG TTTTGGCGATAACGA proB 565447 - 566586 + | glutamate 5-kinase TERM 805 566600 - 566636 + T 84 -10.3 -3.96893 | GATACTCGGTTGCTA TGTGTATGCCTGC CATTTTAACAA GCGGGCATACACA TTTGTGGGCTTTGTT CJA_0462 568611 - 566653 - | hypothetical protein TERM 806 568823 - 568807 - H 74 -3.5 -5.03145 | opp_overlap 568809 568819, overlap 568810 CAAGGTGTTAAAAAA CGACCGC CTG GCGGGTG ATTCGACCCTGTTTG TERM 807 569910 - 569887 - g 78 -7.4 -4.3534 | gap 1, overlap 569888 GCGCAAGGATCAAAA GGCCGGTGAGG CCG CCT-ACCGGCA TATCAACGAGTTGGG TERM 808 569909 - 569888 - g 74 -10.9 -3.20722 | gap 1, overlap 569887 CGCAAGGATCAAAAG GCCGGTGAGG CCG CCT-ACCGGC ATATCAACGAGTTGG CJA_0463 568838 - 570148 + | putative lipoprotein TERM 809 570196 - 570164 - T 70 -10 -3.00946 | gap 1, overlap 570161 CCTGCTCAGAAATCA CGG-CAATCATCAGC GCAA GCTGATGATCGGCCA TTCCCGCTGGTGGGC CJA_0464 570826 - 570173 - | HAD-superfamily subfamily IB hydrolase, TIGR01490 CJA_0465 571035 - 571547 + | hydrolase, NUDIX family CJA_0466 571587 - 573857 + | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 810 574482 - 574523 + G 81 -4.4 -5.07971 | gap 1, overlap 574469 574484 574487 GGGATCGCGCGGCAT CCGAGCCAGCTCTATCAGG CTTTC CTTGA-AGGGCTGGTGCTG TTTTTGATTGTTTTC TERM 811 574554 - 574581 + G 81 -12.6 -3.21981 | overlap 574553 574577 TGGTTTTCTTCCCGT CCGCGCCCACGG GCTG CCGTGTGCGGGG TATTCCTGGTGTTTT lgt 573924 - 574784 + | prolipoprotein diacylglyceryl transferase TERM 812 575292 - 575311 + G 70 -7.2 -4.0921 | gap 1, overlap 575295 GACAGGGGCGTATGG CGT-TGGCA GCT TGCCATACG TTATTTCAGTTTTAT thyA 574820 - 575668 + | thymidylate synthase TERM 813 576168 - 576154 - g 95 -7.1 -5.42259 | opp_overlap 576154 576146 GGATGGTGAAAAAAA TGCGG CACTT CCGCA TCGTTTTCTTGTCTA folA 575690 - 576205 + | dihydrofolate reductase CJA_0470 576442 - 576555 + | hypothetical protein TERM 814 576760 - 576743 - g 73 -3.5 -4.81249 | gap 1, overlap 576747 GCCCAAATGGAAAAA CAAGTTGC CAA GCAA-TTG GAAGTTGTTAGCGAT CJA_0471 576563 - 577270 + | hypothetical protein TERM 815 577318 - 577328 + G 70 -6.8 -4.13767 | GCAGCGGCTGGTTTG CTGG CAT CCAG TTTTGCGATGGCGCA CJA_0472 577267 - 578649 + | MotA/TolQ/ExbB proton channel family protein TERM 816 578667 - 578700 + G 72 -8.1 -3.91897 | GAGATAACTCATGCA GGCTTTAACGGAAGC ATTT GCTGCCATTGGAGCC TTTATGGATCAGGGC TERM 817 578853 - 578841 - g 70 -6.9 -4.13945 | ATCCTCATGGGAAAA GCGCC CAG AGCGC AAATCCTGGAATGCT CJA_0473 578662 - 579189 + | TonB system transport protein ExbB2 TERM 818 579428 - 579404 - g 74 -2.7 -4.95155 | overlap 579407 579408 CGCAGATGACAAAAA GAACGCGACTA TTC TCGTCGCCGTC GGTGCCGATAATGAA CJA_0474 579234 - 579638 + | TonB system transport protein ExbD2 CJA_0475 579644 - 580273 + | putative tonB2 protein TERM 819 580984 - 580994 + G 70 -4.6 -4.48449 | GAATCCTGGTATTTG CTGC AGC GCGG TTTGTATTTTGATAA TERM 820 581652 - 581640 - g 100 -4.8 -5.48028 | opp_overlap 581649 GAAAGAAAAAGAAAA GGCA GAACT TGCC AAGCGTGGTATCTGA CJA_0476 580285 - 581667 + | TPR domain protein TERM 821 581724 - 581695 - T 100 -19.5 -4.4009 | opp_overlap 581695 581700, overlap 581700 TCGCATGTTATAAAA CAAAAGGCCGGTA GAAA TACCGGCCTTTTG TTTTGGTCAGAAGAT TERM 822 581695 - 581724 + T 100 -19.5 -4.25283 | opp_overlap 581695 581700, overlap 581700 TCGCATGTTATAAAA CAAAAGGCCGGTA GAAA TACCGGCCTTTTG TTTTGGTCAGAAGAT TERM 823 581719 - 581700 - T 100 -13.6 -5.18371 | opp_overlap 581695 581700, overlap 581695 TGTTATAAAACAAAA GGCCGGTA GAAA TACCGGCC TTTTGTTTTGGTCAG TERM 824 581700 - 581719 + T 100 -13.6 -5.13722 | opp_overlap 581700 581695, overlap 581695 TGTTATAAAACAAAA GGCCGGTA GAAA TACCGGCC TTTTGTTTTGGTCAG ilvD 583668 - 581824 - | dihydroxy-acid dehydratase TERM 825 583289 - 583251 - G 100 -10.5 -4.72696 | gap 2, opp_overlap 583282, overlap 583282 CGGAAACAAAAATAA CTGGAATATTGA-GG-CGC ATG GCGGCCATCAACATCCCAG GGGTGATCTTGTCGC TERM 826 583453 - 583470 + g 71 -3.3 -4.81249 | overlap 583454 583455 GATGGTGTTGAATTC TTTGGCG ACGC CGCCAGC TTTTTCAATTTCGCG TERM 827 583739 - 583692 - R 82 -13.4 -3.02511 | overlap 583675 583702 TCGATTCTTGGAATA GCGGCTAACAGAGGGCTTCTAT AATA ACAGATGGCCTCCGGCAGCCGC AGTAGGATTCGCGAT CJA_0478 584268 - 583801 - | acetyltransferase, GNAT family argA 585593 - 584265 - | amino-acid N-acetyltransferase TERM 828 584763 - 584753 - G 70 -6.8 -4.07885 | CATCGCGTGTGAAAA GCTC GGT GAGC AGGGCACCGTCGGTG argE 586774 - 585620 - | acetylornithine deacetylase (ArgE) TERM 829 586860 - 586885 + r 86 -11.7 -3.53811 | opp_overlap 586860 TCTGGCAAATAAAAA GCCCGGCGAGG AAAA CCGGGCCGGGC TTTGGGGGCAATCAA TERM 830 586885 - 586860 - R 100 -11.7 -5.27335 | opp_overlap 586860 TCTGGCAAATAAAAA GCCCGGCGAGG AAAA CCGGGCCGGGC TTTGGGGGCAATCAA CJA_0481 588186 - 586912 - | pho4 family protein TERM 831 587252 - 587232 - G 72 -7.5 -3.96068 | CCAGGCCAATAACAA TGCCGGTGG CAC CCAGCAGCA ATACCCAGGACGGCA CJA_0482 588889 - 588212 - | conserved hypothetical protein TIGR00153 TERM 832 588247 - 588290 + g 72 -10.2 -3.28924 | opp_overlap 588237 588238 588286 GCAAACGCCCGCCTA CATCGTGGGCGCGGTTGGCG ATAT CGCCGACCCAGTCAATGATG TTGTACAGAAACATC TERM 833 589781 - 589799 + G 72 -6.6 -4.29176 | overlap 589771 GAATTCGGGCGTATC CGCTTTCG TAT CGATGGCG TTTTGCATTACGTCT TERM 834 590362 - 590343 - g 77 -10 -3.57144 | TCCGCGACCTGGAAA CCGCACAG ATGG CTGTGCAG GCTGCGCTCACCGGC CJA_0483 589058 - 590857 + | type IV pilus biogenesis protein TERM 835 591228 - 591203 - g 78 -12.5 -2.87132 | opp_overlap 591213 TGGCCTGGGGATACA GCAGCGCGCGC CTGG GCGCGCAGTGC CGTGGCGGAAATGCA CJA_0484 590945 - 591628 + | putative glutathione S-transferase CJA_0485 591691 - 591900 + | twin arginine-targeting protein translocase, TatA/E family TERM 836 591950 - 591984 + T 85 -12.3 -3.31501 | opp_overlap 591955, overlap 591955 TAAAAAGTCTGTTCA CAAAAGAGGTCGCTA TTTTT TAGCGGCCTCTTTTA TTGTCGAAAATTGCT TERM 837 591979 - 591955 - T 87 -10 -4.37092 | opp_overlap 591950 591955 AGTCTGTTCACAAAA GAGGTCGCTA TTTTT TAGCGGCCTC TTTTATTGTCGAAAA TERM 838 591955 - 591979 + T 100 -12.2 -4.77165 | opp_overlap 591955, overlap 591950 AGTCTGTTCACAAAA GAGGTCGCTA TTTTT TAGCGGCCTC TTTTATTGTCGAAAA CJA_0486 592676 - 592119 - | PEP-CTERM putative exosortase interaction domain protein TERM 839 592436 - 592393 - G 91 -11.8 -4.00934 | gap 1, opp_overlap 592430, overlap 592386 AGGCCAAACAGCAAA TCGCTGGCGCTCA-CCTCTCC GAA GTAAAGGCTGAACCCCAGCGA CAATTCGTTACTGGT CJA_0487 594100 - 592703 - | Tat (twin-arginine translocation) pathway signal sequence domain protein TERM 840 593009 - 592957 - G 84 -10.6 -3.73107 | gap 1, opp_overlap 592962 592988, overlap 592951 592950 592962 593002 CCATCAAACGCGAAA TACCACCGCGGTCTTCGCACAGCAG CAGT CCGCCGCGCGGAGAC-ACGGTCATA TTGTCCGGTGCAACC TERM 841 593004 - 592962 - G 78 -12.7 -2.86413 | gap 1, opp_overlap 592962 592988, overlap 592951 592950 592957 593002 AAACGCGAAATACCA CCGCGGTCTTCGCACAGCAG CAGT CCGCCGCGCGGAGAC-ACGG TCATATTGTCCGGTG TERM 842 593302 - 593312 + g 72 -6.8 -4.15044 | TGGCGAGCAGGTTGG CCTG CGG CAGG TTTGTTACCGCGAGC TERM 843 593929 - 593880 - G 82 -9.1 -4.21908 | opp_overlap 593880 593896 GACCAGTATTTAAAA CCGGCGGGCAATTGCAGCAGCGG CAGG CCGGTGCTTTCATCGGCCACCGG CATCACCGGGCCGTA TERM 844 593999 - 594019 + g 76 -9.6 -3.794 | opp_overlap 593996 593995 GGCGAGAGAAATGGC GGCGGCAC CGGCA GCGCCGCC TTTCATAAATTCGCG TERM 845 594185 - 594219 + r 82 -2.9 -5.49729 | opp_overlap 594185 594189, overlap 594189 GACCCGAATATGAAA GTAAGGCGTCAAT CAAGTGACA ATTGACGCCTTTG TTTTTTTAACTGGTT TERM 846 594215 - 594189 - R 75 -9.5 -3.61589 | opp_overlap 594185 594189, overlap 594185 CGAATATGAAAGTAA GGCGTCAATCA AGTGA CAATTGACGCC TTTGTTTTTTTAACT TERM 847 594189 - 594215 + r 100 -8.1 -5.21683 | opp_overlap 594189 594185, overlap 594185 CGAATATGAAAGTAA GGCGTCAAT CAAGTGACA ATTGACGCC TTTGTTTTTTTAACT CJA_0488 595040 - 594225 - | Sec-independent protein translocase TatC CJA_0489 595440 - 595045 - | TatB CJA_0490 596376 - 595510 - | hypothetical protein TERM 848 596265 - 596248 - G 75 -6.9 -4.34488 | CATACCGACAATAAA GCCAACC ACCA GGCCGGC AACGATGTATCCGAT gal53A-1 596606 - 597619 + | arabinogalactan endo-1,4-beta-galactosidase, putative, gal53A TERM 849 597671 - 597649 - f 71 -3.3 -4.82901 | opp_overlap 597649 TTTCCTGTACAAAAA CCGCATGGA TAGCC TCTGTGCGG TTTTTTGTTGTTTGG TERM 850 597649 - 597671 + F 100 -7.7 -5.72254 | opp_overlap 597649 TTTCCTGTACAAAAA CCGCATGGA TAGCC TCTGTGCGG TTTTTTGTTGTTTGG gal53B 597653 - 598894 + | arabinogalactan endo-1,4-beta-galactosidase, putative, gal53B CJA_0493 598910 - 599002 + | hypothetical protein TERM 851 599120 - 599136 + F 71 -3.6 -4.77986 | opp_overlap 599120, overlap 599122 TGATAAAAAAAGGGA GCCTGC CGGAT GCAGTC TTTTTCAGTATTTCG TERM 852 602377 - 602394 + G 77 -3.3 -5.12707 | TGAGCACGCCAGGAC CCAGGCT GCAG GGCGTGG TTTTTTAGGATTTGA TERM 853 603419 - 603402 - g 70 -5.5 -4.3586 | CCAGCGATACTAAAA TCTGGTC GACG GCCCAGA TGGCCGGTGGTGGCA TERM 854 603752 - 603736 - g 84 -7.9 -4.614 | opp_overlap 603742 GGTAAGGACAGAAAA GCGCGAC CTG GTCGGGC AGGTGATTGAAGTGG TERM 855 605353 - 605326 - g 70 -10 -3.14132 | gap 1 CCGCCTGTCCAGCAA GCCGATAACAACC CGG GGTT-TTACCGGC CACGAGCATCTGGCG cbp35C 599129 - 606433 + | carbohydrate binding protein, cbp35C TERM 856 606918 - 606945 + T 100 -12 -5.10208 | opp_overlap 606908 606910 606919, overlap 606919 TATAAGAGTTACAGA ACCCGGAACCTG CACC TAGGTTCCGGGG TTTTTATTAACATTG TERM 857 606919 - 606944 + T 100 -15.5 -3.6504 | opp_overlap 606908 606910 606919, overlap 606918 ATAAGAGTTACAGAA CCCGGAACCTG CACC TAGGTTCCGGG GTTTTTATTAACATT TERM 858 606944 - 606919 - T 95 -14.8 -3.55582 | opp_overlap 606919 606918, overlap 606908 606910 ATAAGAGTTACAGAA CCCGGAACCT GCACCT AGGTTCCGGG GTTTTTATTAACATT CJA_0495 607857 - 606961 - | hypothetical protein TERM 859 607257 - 607267 + g 88 -2.4 -5.48825 | opp_overlap 607257 ACGGCATGCGGTAAA CCAG CAT CAGG TTTTTTTCGATGGTC bgl2A 610437 - 608083 - | beta-galactosidase, putative, bgl2A gal53A-2 611622 - 610492 - | Arabinogalactan endo-1,4-beta-galactosidase gal53A TERM 860 611693 - 611672 - R 100 -11.5 -5.40474 | overlap 611673 ATTGCCGCAAAAAAA CGCGGCTGC CGAA GCAGCCGCC AAAACACAACGGGAC TERM 861 611692 - 611673 - R 100 -15 -3.83561 | overlap 611672 TTGCCGCAAAAAAAC GCGGCTGC CGAA GCAGCCGC CAAAACACAACGGGA CJA_0498 614444 - 611718 - | putative TonB-dependent receptor TERM 862 613291 - 613301 + g 72 -8.2 -3.78775 | opp_overlap 613290, overlap 613267 CTGGTTTCGGAAACC GCCG CAT CGGC TTTGATGGTCCAGGC CJA_0499 614495 - 614599 + | hypothetical protein TERM 863 615845 - 615818 - g 70 -5.4 -4.4261 | opp_overlap 615817 615831, overlap 615819 615821 615822 CCTGGAACAGGAAAA TTACCTGCCGGC CGGC GCCGGCAGCTCG CTGTTGGAGGCCTAT TERM 864 615842 - 615821 - g 77 -11.5 -3.18389 | opp_overlap 615817 615831, overlap 615819 615818 615822 GGAACAGGAAAATTA CCTGCCGGC CGGC GCCGGCAGC TCGCTGTTGGAGGCC TERM 865 615841 - 615822 - g 89 -15 -2.5031 | opp_overlap 615817 615831, overlap 615821 615819 615818 GAACAGGAAAATTAC CTGCCGGC CGGC GCCGGCAG CTCGCTGTTGGAGGC glnE 614655 - 617621 + | glutamate-ammonia-ligase adenylyltransferase ilvE 617648 - 618577 + | branched-chain amino acid aminotransferase TERM 866 618602 - 618631 + F 100 -20.9 -4.36914 | opp_overlap 618605 618608 CGGATATTGTGTCGA CAACAACGGAGCC CACT GGCTCCGTTGTTG TTTTATCCACCGGGA TERM 867 618628 - 618605 - f 100 -16.8 -3.29263 | opp_overlap 618602, overlap 618608 ATATTGTGTCGACAA CAACGGAGCC CACT GGCTCCGTTG TTGTTTTATCCACCG TERM 868 618625 - 618608 - f 93 -12.7 -3.78934 | opp_overlap 618602, overlap 618605 TTGTGTCGACAACAA CGGAGCC CACT GGCTCCG TTGTTGTTTTATCCA TERM 869 618899 - 618938 + G 73 -12 -2.82516 | TGATGGCGCGCTACC GCCTGGGCAAGTCCCTGG CCGA CCGGGGCTATGACCAGGC TATCCTGCTGCCCAA gt9A 618658 - 619725 + | glycosyl transferase, putative, gt9A TERM 870 619807 - 619795 - g 73 -9.1 -3.67976 | GCGATGAACTGCAAA CCCTG TGG CAGGG GCAGGACATTTTTGC TERM 871 620370 - 620397 + G 71 -2.7 -4.85782 | gap 1, overlap 620372 GCCCGCGTGCCGCGT CGCTGG-CAGGT GAAAG ACCTGGCCAGTA TTTATTTTTCGGCCA TERM 872 620372 - 620395 + G 74 -7.5 -4.04587 | gap 1, overlap 620370 CCGCGTGCCGCGTCG CTGG-CAGGT GAAAG ACCTGGCCAG TATTTATTTTTCGGC waaP 619746 - 620591 + | lipopolysaccharide core biosynthesis protein WaaP TERM 873 621099 - 621057 - g 100 -13.3 -3.78953 | overlap 621032 AGCGCTATTACCAAA CACCGGACGTCCGCCTGCA TAGGT TGCCGCCGGGCATCCGGCG CGATCGGGTGATGCC TERM 874 621628 - 621644 + G 77 -2.9 -5.1101 | GCGAGCCCGGGATTT CATTGCC CAT GGAGATG TTTTTTCGATGATGG gt4E 620588 - 621718 + | glycosyl transferase, putative, gt4E TERM 875 621834 - 621849 + G 70 -6 -4.20118 | overlap 621848 TCTGGGCCTCGGGGC CGGCGC CCTT GCGCGG TATTTTTTACCTGTT TERM 876 622274 - 622303 + G 74 -5.8 -4.56597 | gap 1 TATATCAAATCCCTG CAGGCA-GACAGT GCAAA ACTGTCCTGGCTG TTTTTGGGCGCAGCG CJA_0505 621728 - 622912 + | O-antigen polymerase family protein TERM 877 623115 - 623098 - g 70 -6.9 -4.01078 | opp_overlap 623112 AAAACCGACTACAAA GGCCTGC GCCT GAAGGCC ATGGGCAAACTGCGG gt4D 622897 - 624021 + | glycosyl transferase, putative, gt4D CJA_0507 624014 - 624133 + | hypothetical protein TERM 878 624304 - 624293 - g 70 -5.8 -4.1899 | CCACGTGATGGAAAA GCTG GTGG CAGC CATCGAATCGGATGA msbA 624123 - 625895 + | lipid A export permease/ATP-binding protein MsbA rfaE 625951 - 627387 + | LPS biosynthesis protein RfaE CJA_0510 627350 - 627982 + | methyl-accepting chemotaxis protein TERM 879 628057 - 628041 - gf 72 -9.3 -3.53224 | opp_overlap 628038 628041 GATTGTGCTGGTAAA GCTGGCG AGT CGCCTGC TGGTTGTCGCCCAGG TERM 880 628309 - 628346 + GF 70 -4.9 -4.38712 | gap 1, overlap 628304 628308 TCCCATCAGGCGGCC GAGTCGATTCGTGTTGCC ATG GACAATATGCA-CGACTC TTTTGTGGCAGTGGC TERM 881 628415 - 628370 - gf 72 -8.1 -3.72893 | CAGTGGCCGAGCAAA TCCAGCGCGCTGCCGGCCT GGCGGAAG ATACCGCCCGCGCGCAGGA AGAGGGTAAGGTAGC CJA_0511 627988 - 628704 + | methyl-accepting chemotaxis protein CJA_0512 628635 - 629042 + | methyl-accepting chemotaxis transducer CJA_0513 630240 - 629086 - | NADH-dependent butanol dehydrogenase CJA_0514 630313 - 630209 - | hypothetical protein CJA_0515 630686 - 630333 - | iron-sulfur cluster-binding protein, Rieske family TERM 882 630666 - 630625 - G 70 -7.3 -4.07568 | gap 2 CGCTGCTCGCTAAAA CCTCTGCACCCCCCTGCCG GAATAT CGGCCAGGG--CGCAGAGG ACGGTAAATTCTTCG CJA_0516 631738 - 630683 - | hypothetical protein TERM 883 630763 - 630775 + g 77 -6.9 -4.55887 | CCACACTCACATTGA CCTGG TCA CCGGG TTTGTATTTTTCCAG TERM 884 631701 - 631677 - G 79 -12.2 -3.04799 | gap 1, overlap 631667 GAGAAGGCCTGAACA CTGGCGCTCAG GGCA CTG-GCGCCAG TCAGGAAGGTTAATA htpX 632651 - 631770 - | heat shock protein HtpX TERM 885 632083 - 632070 - G 88 -5.2 -5.24129 | GGTGGTGATAAAAAA GGCG ATACCG CGCC CCTCTTCATTTTTGA TERM 886 632849 - 632828 - R 95 -12.9 -4.18018 | CTGTTTGAGGGAAAA GGGCCGCCC GTGA GGGCGGCTC AAGCAACCGTGTTAG CJA_0518 633936 - 633064 - | cAMP-dependent protein kinase TERM 887 633954 - 633898 - G 73 -9.5 -3.61517 | opp_overlap 633898 633902, overlap 633899 AGCCCGGGGCAATAA GCCAGGGAACCTCTGAAAAATTCCCCA GGT TGCCAACATTTTCAGAGGTTCCCTAGA TTGTAGCCGTTACCA TERM 888 633953 - 633899 - G 81 -13 -2.76696 | opp_overlap 633898 633902, overlap 633898 GCCCGGGGCAATAAG CCAGGGAACCTCTGAAAAATTCCCCA GGT TGCCAACATTTTCAGAGGTTCCCTAG ATTGTAGCCGTTACC CJA_0519 634346 - 634050 - | TfoX C-terminal domain superfamily TERM 889 634692 - 634702 + G 71 -2.4 -4.99638 | overlap 634686 TTGTCTGCACGTGCT GCGG CAG CCGG TTTTTCTGTGCGTGT CJA_0520 634569 - 635249 + | D-alanyl-D-alanine carboxypeptidase TERM 890 635330 - 635348 + G 93 -8.8 -5.06451 | CGGTTGGATGTTATT TGACTGGG CTG CCCAGCCA TTTTTTACCGTAATC CJA_0521 635271 - 636683 + | transporter CJA_0522 636689 - 637501 + | serine acetyltransferase CJA_0523 637741 - 637502 - | hypothetical protein CJA_0524 637943 - 638683 + | hypothetical protein TERM 891 638988 - 638970 - g 93 -5.9 -5.26875 | overlap 638971 CGCCGAATTAAAAAA TGCCAGC TTGAT GCTGGCG CTGATGCCGCTGTTC TERM 892 638987 - 638971 - g 76 -9.4 -3.75402 | overlap 638970 GCCGAATTAAAAAAT GCCAGC TTGAT GCTGGC GCTGATGCCGCTGTT TERM 893 639844 - 639818 - g 73 -11.6 -2.64144 | overlap 639817 639815 CGCCCAGTGAAACAC CCGCTGCTGC GCAGCAA GCAGCAGCGA CAGAAGATACTCCCT TERM 894 639986 - 639972 - g 72 -4.9 -4.66833 | overlap 639973 TGTTAATGCCAAAAA CGGCG TGATC CGCCA GAAGCTGTCTGCCAA CJA_0525 638722 - 640878 + | AsmA family superfamily TERM 895 640989 - 641020 + G 100 -13.2 -5.42259 | opp_overlap 640989 TTTGATCAATAAAAA CCAGGAGATGATTT CGGT AAATCGTTTCCTGG TTTTTTTGCAGCTAG TERM 896 641020 - 640989 - g 93 -8.8 -5.1356 | opp_overlap 640989 TTTGATCAATAAAAA CCAGGAGATGATTT CGGT AAATCGTTTCCTGG TTTTTTTGCAGCTAG CJA_0527 640975 - 641067 + | hypothetical protein CJA_0526 641261 - 641064 - | hypothetical protein TERM 897 641393 - 641415 + r 79 -2.6 -5.27923 | opp_overlap 641392 TTAGCTTGTTGAAAT GCTGTGGCAA CAT TCGCTAGAGC TTTTTTATCCAATTC TERM 898 642292 - 642321 + r 83 -13.7 -2.66395 | opp_overlap 642298, overlap 642298 CTGCAAAGCAGCAAT AAAAAACGGGAGC CTCG GCTCCCGTTTTTG GTTGTGGTGGTAAGT TERM 899 642298 - 642315 + r 100 -12.7 -4.94972 | opp_overlap 642298, overlap 642292 AGCAGCAATAAAAAA CGGGAGC CTCG GCTCCCG TTTTTGGTTGTGGTG TERM 900 642315 - 642298 - R 100 -12.7 -5.52023 | opp_overlap 642298 642292 AGCAGCAATAAAAAA CGGGAGC CTCG GCTCCCG TTTTTGGTTGTGGTG CJA_0528 643218 - 642343 - | nitrate ABC transporter permease protein CJA_0529 644580 - 643231 - | nitrate-binding protein nrtA precursor, periplasmic TERM 901 643618 - 643634 + g 81 -6.6 -4.59511 | opp_overlap 643618 CGGTGCGCCAATCCA TTTGCG GTCAG CGCAAA TTTTTGCAACCTCTT mutY 645033 - 646148 + | A / G specific adenine glycosylase CJA_0531 646152 - 646427 + | hypothetical protein TERM 902 646699 - 646740 + G 70 -5.2 -4.4009 | gap 3, opp_overlap 646704, overlap 646700 646701 ATCGCAGGCAGCCGA TACCAGCCCGC-GT-GAGCGG ATA CTGCTCAACAGCGG-CTGGCG TTTTATGAAGTACCC TERM 903 648908 - 648890 - g 88 -5.3 -5.27335 | gap 1, opp_overlap 648907 GGGCGCAAACAAAAA GGCGAGTA CGAA TAC-CGCC TGCGCTGGGATGAGG bgl2B 646550 - 649342 + | beta-galactosidase, putative, bgl2B TERM 904 649423 - 649380 - f 82 -6 -5.2696 | opp_overlap 649380 649379, overlap 649382 649383 TGAAAATTTAAAAAA TAGTAGACGCGATCGCGC TGTGTTTT GTGCGATTGCGTCTAACA CTTGATTTCGATCGT TERM 905 649421 - 649382 - f 72 -6.4 -4.24654 | opp_overlap 649380 649379, overlap 649380 649383 AAAATTTAAAAAATA GTAGACGCGATCGCGC TGTGTTTT GTGCGATTGCGTCTAA CACTTGATTTCGATC TERM 906 649420 - 649383 - f 71 -9.9 -3.12352 | opp_overlap 649380 649379, overlap 649382 649380 AAATTTAAAAAATAG TAGACGCGATCGCGC TGTGTTTT GTGCGATTGCGTCTA ACACTTGATTTCGAT TERM 907 650913 - 650935 + G 71 -9.2 -3.52396 | overlap 650901 650912 650915 TCAGCGCCATCCGCG TGTGCGCTTT GGC AAGGCGCATA TCTTTAATAATTATT pel1B 649594 - 651288 + | pectate lyase, putative, pel1B TERM 908 651344 - 651313 - Tf 82 -13 -3.05022 | CGCCTGACAGAGATA TCCATTGCGCCGAC GTGA GTCGGCGTAATGGT AAATGGGGATGGGGT CJA_0534 651816 - 651388 - | Transcriptional regulator family TERM 909 651953 - 651967 + GH 80 -11.4 -3.34404 | overlap 651951 GATTACCGGTGCCAC CGGCCA GCT TGGCCG TCTTGTGATTGATGC CJA_0535 651801 - 652823 + | hypothetical protein CJA_0536 652810 - 653448 + | 2-hydroxychromene-2-carboxylate isomerase family protein TERM 910 653444 - 653493 + T 100 -16.6 -2.85712 | gap 1, opp_overlap 653450 653451, overlap 653451 653452 AGGATTTATTGCATG CCTAAACGGCAGGGCACCGTC ATCAGTCCA GGCGGTGCCCTGC-GTTTTGG TGATTGTCCATGTGG TERM 911 653487 - 653450 - T 79 -10.6 -3.57462 | gap 1, opp_overlap 653444 653451 653452, overlap 653451 TATTGCATGCCTAAA CGGCAGGGCACCGTC ATCAGTCCA GGCGGTGCCCTGC-G TTTTGGTGATTGTCC TERM 912 653487 - 653451 - T 71 -10.8 -2.74263 | opp_overlap 653451 653444 653452, overlap 653450 ATTGCATGCCTAAAC GGCAGGGCACCGTC ATCAGTCCA GGCGGTGCCCTGCG TTTTGGTGATTGTCC TERM 913 653451 - 653487 + T 100 -13 -4.37527 | opp_overlap 653450 653451, overlap 653444 653452 ATTGCATGCCTAAAC GGCAGGGCACCGTC ATCAGTCCA GGCGGTGCCCTGCG TTTTGGTGATTGTCC TERM 914 653452 - 653486 + T 100 -16.5 -3.21793 | opp_overlap 653450 653451, overlap 653451 653444 TTGCATGCCTAAACG GCAGGGCACCGTC ATCAGTCCA GGCGGTGCCCTGC GTTTTGGTGATTGTC choB 656940 - 653515 - | cholesterol oxidase TERM 915 654542 - 654556 + g 77 -7 -4.56775 | ATCTCCGGTGCCGGG GCGCGC AAC GGGCGC TTTTTGCGCGGAGGT TERM 916 654652 - 654638 - G 95 -7 -5.40474 | opp_overlap 654649 ACCCCGGCAAAAAAA CGCCCG AAG CGTGCG GTGTGGCGCAATTGC TERM 917 654896 - 654872 - G 91 -2.7 -5.54894 | overlap 654874 654876 AATCCATCAAAAAAA TACTCGCTGCC ATC GATAGCGTGCA GGCGCATGCGATAGC TERM 918 655078 - 655116 + g 72 -9.8 -3.36273 | opp_overlap 655091, overlap 655084 GTCATCGCTGTATAC GGTCAGGGCAAAG-GCGA TGTCC TCGCGCTTTGCCTT-ACC TTGCTGTTCGGCGGC TERM 919 655084 - 655111 + g 74 -10.7 -3.23979 | gap 1, opp_overlap 655091, overlap 655078 GCTGTATACGGTCAG GGCAAAG-GCGA TGTCC TCGCGCTTTGCC TTACCTTGCTGTTCG CJA_0538 657533 - 657048 - | hypothetical protein TERM 920 657382 - 657350 - GH 79 -9.8 -3.69256 | gap 1, overlap 657351 ATGTACCCAAGACAA CCGCCGCCAGGG-CA ACGC TGACCCCCGCGGCGA TAATCAAGCTATGGA TERM 921 657381 - 657351 - GH 74 -11.1 -2.81072 | gap 1, overlap 657350 TGTACCCAAGACAAC CGCCGCCAGGG-CA ACGC TGACCCCCGCGGCG ATAATCAAGCTATGG CJA_0539 657517 - 657618 + | hypothetical protein CJA_0540 659898 - 658519 - | hydroxydechloroatrazine ethylaminohydrolase TERM 922 658624 - 658644 + g 79 -9.7 -3.85698 | TACTTTCCATTCGCC GCCGACCAT TAC ATAGTCGGC TTTATGGGCACCGCA TERM 923 659269 - 659255 - G 70 -4.2 -4.65895 | overlap 659236 TGCGTCACCGAAAAA GGCG AGCAGGG CGCC AGGGCGATTTGGCAA CJA_0541 660620 - 659895 - | transcriptional regulator, TetR family TERM 924 660694 - 660713 + r 83 -13.6 -2.62616 | CGCTGTGCAGTCAGT GGCAACCC TGCA GGGTTGCC TGGTATGCAACATCA CJA_0542 661836 - 660769 - | bmp family protein TERM 925 661644 - 661655 + g 70 -5.8 -4.24786 | CCTCGGCCACGCTTT CCAC ATAG GTGG TTTCTATCTTGTCAG CJA_0543 662789 - 661863 - | ABC transporter, permease protein TERM 926 662088 - 662049 - G 79 -10.1 -3.84451 | gap 3, overlap 662052 GCTGGCAAAGCCAAA CAGCCAGGCGC--CGAGCAG GAT CCGCTCGCTGCGCC-AGCTG GCAAACACCACCAGC TERM 927 662402 - 662379 - G 77 -6.6 -4.56775 | ATCCTGGGCGAAAAA GGCCTTGCCC AGCA GGGGAATGCC ACTTAACAGCGGGAT CJA_0544 663884 - 662793 - | permease protein of sugar ABC transporter TERM 928 663008 - 662983 - G 82 -9 -4.16842 | overlap 663000 GTCAGTCCTAACAAA CCACTGGAGA GCAAAA TCCCCAGCGG GTGCATACGGCCCAT TERM 929 663079 - 663093 + g 71 -9.2 -3.51708 | overlap 663080 663082 AGGGTGGGAATCAGT TGGCCC ACG GGGCCG TTGGTTTCGGAAATG TERM 930 663080 - 663092 + g 70 -10.5 -2.70704 | overlap 663079 663082 GGGTGGGAATCAGTT GGCCC ACG GGGCC GTTGGTTTCGGAAAT TERM 931 663147 - 663198 + g 70 -7.2 -4.09685 | gap 1, opp_overlap 663147 663150, overlap 663150 GCTGAACAGTAGCAA CAGCCAGGT-GAGTGCCTTGCCG TTAAACC CGGCAAAGCGCGCCGCCTGGTGG TTTTCGCCCATGACG CJA_0545 665511 - 663874 - | ABC transporter, ATP-binding protein TERM 932 664437 - 664454 + g 71 -9.1 -3.51365 | opp_overlap 664415 CGGCGCGGCGGCGCG CCTGCAC CCCG GTGCGGG TTATATCGCGTGTAC TERM 933 665474 - 665455 - G 70 -10.6 -2.82742 | opp_overlap 665454 665453, overlap 665452 AGCGCCGGATAATGA CCCGGGCG GTAG CGCCGGGG GATGTTTTGTGGGCA TERM 934 666262 - 666235 - g 76 -3.5 -5.0133 | gap 1, opp_overlap 666237 CAGTCCCTTAAAAAA CCTGCCCAA-AT GGCCA ATATTGTGCAGG AATGGCTTCCCGATG TERM 935 666835 - 666807 - g 77 -11.8 -3.13403 | gap 1, overlap 666805 666826 CGCGCCTGACGAATA CCTGGCGCGC-AT CCAC ATAGCGCGCCAAG CCCTGGCCCAGCCCC TERM 936 666853 - 666875 + G 83 -12.8 -3.31263 | overlap 666835 CTGGCCCAGCCCCAG CGCTTGTTCA AGG TGAGCAAGCG TTATGAGGATGACAT xdhA 665734 - 667212 + | xanthine dehydrogenase, XdhA subunit TERM 937 667965 - 667947 - gf 72 -7.4 -3.90112 | opp_overlap 667956 TTGGCGGTAAGGAAA GCCAGG CCGCGCC CCTGGC GTGTATGGCGGCGAT xdhB 667205 - 669562 + | xanthine dehydrogenase TERM 938 670312 - 670302 - gf 72 -6.8 -4.18018 | TTGCCCGAGGTAAAA GGCA AAT TGCC CATGGAGGTGGCGGT CJA_0548 669528 - 670457 + | putative xanthine dehydrogenase accessory factor XdhC CJA_0549 670503 - 671000 + | hypothetical protein TERM 939 671082 - 671067 - g 85 -11.8 -3.60792 | TCCTTAACCTGGAAA GCGGCC GGCC GGCCGC CGATGTACAGGCCTA CJA_0550 671012 - 671362 + | Transthyretin-like protein precursor TERM 940 671729 - 671751 + G 75 -5.5 -4.7173 | overlap 671730 TTGCCGATGCAGAGT TTGCTGCGC TGGCC GCGCAACAG TTTTTAAATATACTG TERM 941 672709 - 672678 - g 73 -11.6 -2.72661 | gap 1 TATCATGGGCAAGCA GGTCTTCCGTCGCGC ATC GCGCAA-GGAGGACC AACAATGGACGCACT CJA_0551 671389 - 672726 + | guanine aminohydrolase TERM 942 673496 - 673519 + G 100 -6.7 -5.53288 | gap 1 ATTAGTCGGCATTGG TGGCTGCCTC GCCTG GGGGC-GCCA TTTTTTTAACTTGAA TERM 943 673706 - 673694 - g 93 -6.3 -5.26875 | TGCGCAAGTAAAAAA TACAG CAC CTGTA AGCCACAATTCAGAT TERM 944 673751 - 673737 - g 70 -4.2 -4.67353 | overlap 673719 673738 GCACCTATTCAAAAA CTGGTG CAA CACCAC TGCACTAACTGCCAC CJA_0552 672714 - 673958 + | hypothetical protein CJA_0553 673960 - 674262 + | hypothetical protein TERM 945 674706 - 674680 - g 72 -4.4 -4.69326 | ATATTGAACACAAAA TCAAAGCAGAAG ATG CCGCTGCCTTAA AAGCCATCACCGAAA CJA_0554 674427 - 674837 + | hypothetical protein TERM 946 675076 - 675089 + T 72 -6.7 -4.2828 | opp_overlap 675076, overlap 675069 TGAGACATCTCTAAA CTGGA GTTT TCCAG TTTTGCTCGGTACGC CJA_0555 675899 - 675057 - | transposase TERM 947 675431 - 675419 - G 70 -10.5 -2.71364 | CCAGCGCTCGAACCA CCCGC TCA GCGGG CAAGGAGGTATCCAC TERM 948 675869 - 675880 + g 93 -5.8 -5.20781 | opp_overlap 675868 675869 CGTGCTCAACCAAAG CCTG TGCG CAGG TTTTCTTTTCTGCTG CJA_0556 676165 - 675896 - | transposase CJA_0557 677041 - 676643 - | hypothetical protein TERM 949 676979 - 676926 - G 77 -9.9 -3.7108 | gap 1, opp_overlap 676924, overlap 676931 676962 676964 ATTCTCATATCGAAA CCCAATTCTTGAGCCATATT-CTTTA ACT TTAAGCAATATGGCTCAAGAAATGTA CATGTCTTAAGCCAA TERM 950 676974 - 676931 - G 100 -15 -3.30038 | gap 1, opp_overlap 676924, overlap 676926 676962 676964 CATATCGAAACCCAA TTCTTGAGCCATATT-CTTTA ACT TTAAGCAATATGGCTCAAGAA ATGTACATGTCTTAA CJA_0558 678791 - 678420 - | hypothetical protein TERM 951 678587 - 678613 + g 91 -3 -5.59879 | opp_overlap 678587, overlap 678590 TATAAAGATCTATAA TTTTCTTGCATG TTT CATGCGAAATAA TTTTTTCTCTTTCTA TERM 952 678710 - 678740 + g 74 -8.3 -3.95627 | opp_overlap 678709, overlap 678711 TAAGTTTTAATTGAT CTTCTTTTGGGGC CGACA GCCCCAAAAGACC TTCTTGTATGATTTT TERM 953 678711 - 678739 + g 75 -11.8 -2.9575 | opp_overlap 678709, overlap 678710 AAGTTTTAATTGATC TTCTTTTGGGGC CGACA GCCCCAAAAGAC CTTCTTGTATGATTT cbp35B 685997 - 678798 - | carbohydrate binding protein, putative, cbp35B TERM 954 680243 - 680253 + g 71 -3.2 -4.84363 | CGTAGTGGAACCGGG TGGT GTG ACCG TTTTTGCTGATTTGG TERM 955 680785 - 680800 + g 93 -6.2 -5.24129 | TGAGCATCAACGCTA CCTATT GTGT AATAGG TTTTTTGTGCGCCGC TERM 956 680948 - 680930 - G 72 -4.5 -4.6856 | opp_overlap 680929 680930 680932 CAAATACCTGAAAAA TACGGCC GTATT GGTCGTA GGTTATTTTTTCGTA TERM 957 681077 - 681091 + g 71 -2.8 -4.76041 | GTGTACCTGCCACCG CCAATA GGG TATAGG TTTTTGCTAGCTGTC TERM 958 683246 - 683266 + g 73 -3.9 -4.75776 | opp_overlap 683246 CAAGACCATTAACTA CCCGATAAA TTT TATTTCGGG TTTTTCCATTGGCTT TERM 959 683993 - 683981 - G 72 -7.7 -3.9461 | opp_overlap 683980 GTTGGGGAACAACAA CAGGA ACC TCCTG CTCTGGTGCATAACC TERM 960 686006 - 685990 - G 73 -3.6 -4.77986 | opp_overlap 685990, overlap 685992 CGAAATACTGAAAAA GACTGC ATCCG GCAGAC TCCCTTTTTTATCAA TERM 961 686056 - 686032 - R 73 -11.3 -2.71905 | opp_overlap 686050, overlap 686028 ATCAATAACAATCCA CCGCTGAGGCA AAG CGCCCCTGCGG ATAATCCGAGGTTAT TERM 962 686288 - 686247 - R 95 -11.7 -4.36596 | gap 1, opp_overlap 686254 686255, overlap 686253 686255 TGGACAATGAATAAA GCAAA-ACACGCAGCAGGTT GAT AACCCGCTGCGCTTGTTCGC TTTAGAAGGTAGCGC TERM 963 686281 - 686253 - R 100 -11.7 -4.68846 | opp_overlap 686254 686255, overlap 686247 686255 ATGAATAAAGCAAAA CACGCAGCAGGTT GAT AACCCGCTGCGCT TGTTCGCTTTAGAAG TERM 964 686254 - 686280 + r 83 -10.8 -3.77832 | opp_overlap 686253 686247 686255, overlap 686255 TGAATAAAGCAAAAC ACGCAGCAGGTT GAT AACCCGCTGCGC TTGTTCGCTTTAGAA TERM 965 686255 - 686279 + r 87 -14.3 -2.86217 | opp_overlap 686255 686253 686247, overlap 686254 GAATAAAGCAAAACA CGCAGCAGGTT GAT AACCCGCTGCG CTTGTTCGCTTTAGA TERM 966 686279 - 686255 - R 100 -16.5 -3.94086 | opp_overlap 686254 686255, overlap 686253 686247 GAATAAAGCAAAACA CGCAGCAGGTT GAT AACCCGCTGCG CTTGTTCGCTTTAGA CJA_0560 688596 - 686290 - | outer membrane ferric siderophore receptor TERM 967 687671 - 687682 + g 72 -4.4 -4.62872 | opp_overlap 687663, overlap 687676 687677 CAATAATCGCCGTAA TTGC AACT GCAA TTTTTGCGGCTTAAT TERM 968 688830 - 688805 - R 100 -11.9 -4.72272 | opp_overlap 688804 688803 GGGCTGGATTAAAAA GCGGGAGTTAA GGGC TTACCTCCCGC GCTTCGTCTACAGGC pda4B 689734 - 688838 - | polysaccharide deacetylase protein, putative, pda4B CJA_0562 689872 - 689744 - | hypothetical protein TERM 969 690080 - 690100 + G 81 -9.7 -3.98649 | overlap 690081 TTGCGCAACCTGTCC TTTGCCCGT GTT GCGGGCAAG TTCTTCTGTATTGTC TERM 970 690081 - 690099 + G 71 -11 -2.98105 | overlap 690080 TGCGCAACCTGTCCT TTGCCCGT GTT GCGGGCAA GTTCTTCTGTATTGT CJA_0563 690059 - 691582 + | putative adenosine deaminase TERM 971 691621 - 691633 + G 76 -7.7 -4.21194 | overlap 691588 GTTCATCCAGGCTGT GCATG GCA CATGC TTTTGCATCATCAGG CJA_0564 691593 - 691739 + | hypothetical protein TERM 972 692313 - 692335 + G 78 -9 -3.86897 | TGACCGTATCGACAT TGTGCGCGGC CCG GCCTCGCCCA TTTATGGCCCGTCCA TERM 973 693437 - 693425 - g 100 -9.1 -5.25803 | overlap 693427 AAGTTGGAGAAAAAA GGCGT GGT ACGCC AGCGGATGTTGTTGC TERM 974 693983 - 693970 - g 74 -2.3 -5.06451 | GATGACGCTAAAAAA TCCGG TATC CCTGA AAACATGTACAGCCT TERM 975 694022 - 694064 + G 72 -8.5 -3.74713 | gap 1, overlap 694023 CCTATGACTTTGGTA ATGGTATCCGCTTT-ACCGC AAGT GCGGTTAAGGCTGATGCCAC TTATTCCGGTTTTTC TERM 976 694023 - 694063 + G 75 -12 -2.83743 | gap 1, overlap 694022 CTATGACTTTGGTAA TGGTATCCGCTTT-ACCGC AAGT GCGGTTAAGGCTGATGCCA CTTATTCCGGTTTTT CJA_0565 691864 - 694281 + | putative TonB-dependent receptor TERM 977 694331 - 694315 - f 78 -12.3 -2.54193 | GATGATGTGAACGGA GGCTTGC GCG GCAAGCC TCCACAACAATCGAG CJA_0566 694354 - 695109 + | hypothetical protein TERM 978 695327 - 695317 - g 72 -6.8 -4.21607 | opp_overlap 695317 GCCAGCGAACAGAAA GCCA TGT TGGC TGATGTAAAAGCCAA CJA_0567 695122 - 696498 + | TolR CJA_0568 696516 - 697028 + | TonB system transport protein ExbB2 TERM 979 697162 - 697152 - g 72 -5.4 -4.49316 | ACGATGAAGAAGAAA GTCA AAT TGAC CTGACGCCCATGCTC CJA_0569 697112 - 697519 + | TonB system transport protein ExbD2 CJA_0570 697519 - 698151 + | TonB2 protein CJA_0571 698187 - 699488 + | tetratricopeptide repeat domain protein TERM 980 699749 - 699761 + G 75 -4.8 -4.84527 | TCTATTACGCCGAGT GGGA CGGTA TCCC TTTTTACTATGTGCA CJA_0572 699523 - 700449 + | methylthioadenosine phosphorylase TERM 981 700537 - 700521 - g 70 -4.3 -4.56597 | overlap 700522 GGCTGCTCCGAAAAA CCCACCG AGA CGGTAGC GACTGCCGCAGTAGT TERM 982 701164 - 701142 - g 81 -7 -4.62471 | overlap 701143 701159 CCTAATGCGCAAAAA CCGCCCTT TGTACTC AAGGGCGA CCAGTTGGCGGCCAT CJA_0573 700449 - 701549 + | putative purine nucleoside permease TERM 983 701641 - 701663 + G 75 -12 -2.91383 | opp_overlap 701641 701640 TGTCGTTAGATCAAC GTGTCTTCGC TTG GCGGGGACAC TATGTGCATCCGAGT CJA_0574 701625 - 702806 + | amidase TERM 984 703201 - 703226 + G 70 -9.7 -3.25823 | GCACTTGCTGGCTCC TGCCATTGCCC TGGC GCGCGATGGCA TTCGTGTAACCCGCA CJA_0575 702806 - 704395 + | gamma-glutamyltranspeptidase CJA_0576 704388 - 705215 + | hypothetical integral membrane protein TERM 985 705766 - 705779 + G 72 -5.9 -4.43909 | overlap 705765 TGGGGGCGATCTGTG CGCGC TACG GCGTG TTGTTTTATTCCGAT TERM 986 705942 - 705921 - g 70 -3.6 -4.67755 | ACACTGAGTGAAAAA GCCGTCGA GCGCAT TCGCCAGC GCCGCCATGTCGAAG TERM 987 706097 - 706116 + G 91 -9.2 -4.63218 | CACCATGCTCTACGG TGCCCGCG AATG CGCGCGCA TTTTGTTGGAGGAGG pucG 705255 - 706517 + | purine catabolism protein TERM 988 707475 - 707493 + G 77 -10.2 -3.57144 | TGGCCGATGCCTTTG GCCTGACG CGC CGGCAGGC TTTGCAACTGGCCCA CJA_0578 706529 - 707596 + | adenosine deaminase TERM 989 708402 - 708413 + G 73 -3.6 -4.74504 | overlap 708400 AGTCACGGCGATTGC CGGT GCCC GCCG TTTTTCGATTGAGGT TERM 990 708550 - 708524 - g 74 -3.1 -5.00616 | gap 1 TGCTGGTTGAAAAAA TTGCCA-AAGAG TCCG CTGTTGTGGCAA CCGTTGGCCAGCTTG amaB 707680 - 708993 + | N-carbamoyl-L-amino acid hydrolase hpt-1 709015 - 709599 + | hypoxanthine-guanine phosphoribosyltransferase CJA_0581 710346 - 709927 - | hypothetical protein CJA_0582 710633 - 710445 - | hypothetical protein TERM 991 710622 - 710591 - G 77 -5.9 -4.72272 | gap 2, overlap 710592 710593 GTTTTCCATTAAAAA TGGCACCCGGACAGC ACAA GATG-CCGGGTGC-A GGATGGGACATTATT CJA_0583 711676 - 710633 - | putative purine nucleoside permease CJA_0584 712842 - 711829 - | adenosine deaminase TERM 992 712677 - 712665 - G 70 -6.3 -4.15044 | TTGCGGCGTAATAAA TCGTT AGA AACGA GGGCAGGTCGTAAAA TERM 993 712961 - 712943 - g 91 -3 -5.50313 | overlap 712944 712945 CAGAAAATTAAAAAA CCTGGCCA AAT TGGCCACC AGGTGTGCACAAGAA CJA_0585 712875 - 712979 + | hypothetical protein TERM 994 713333 - 713310 - f 86 -11 -3.79747 | opp_overlap 713310 CCATCTATTATGAAA CCCGAAGTTC TTAC GAGCTTCGGG TTTTTTGCTATTGGA TERM 995 713310 - 713333 + F 100 -13.2 -5.27779 | opp_overlap 713310 CCATCTATTATGAAA CCCGAAGTTC TTAC GAGCTTCGGG TTTTTTGCTATTGGA TERM 996 713557 - 713536 - g 70 -4.4 -4.56597 | gap 1 TGTGTTTGGCAAAAA CCAGCCGCC CCACC GAC-GCTGG CCTGTTGCCTGGTAT TERM 997 714377 - 714397 + G 72 -7.5 -3.86897 | GAGGGTTACCCCAAG CGCTATCAG CGC CTGGAAGCG TTTATCCGCGATAAA TERM 998 714890 - 714905 + G 71 -2.4 -4.89477 | overlap 714891 GCGGTTGTAACCAGT AGCTGG ATTC CCGGCA TTTTATTATTGGCCA CJA_0587 713510 - 715372 + | hypothetical protein TERM 999 715390 - 715419 + F 100 -18.1 -4.18161 | opp_overlap 715397, overlap 715397 GGCAGCAAGGGCTTA TACAAAACGGCAC TTTG GTGCCGTTTTGTA TTTTCAGCCTTTATA TERM 1000 715397 - 715412 + F 100 -10.4 -4.89567 | opp_overlap 715397, overlap 715390 AGGGCTTATACAAAA CGGCAC TTTG GTGCCG TTTTGTATTTTCAGC TERM 1001 715412 - 715397 - f 93 -10.4 -4.52857 | opp_overlap 715390 715397 AGGGCTTATACAAAA CGGCAC TTTG GTGCCG TTTTGTATTTTCAGC CJA_0588 715626 - 716045 + | hypothetical protein TERM 1002 716099 - 716082 - T 100 -14.1 -5.38054 | opp_overlap 716082 GCGTAGAAATAAAAA CGCCCGG AAGT CCGGGCG TTTTAGGGGGGGCGT TERM 1003 716082 - 716099 + T 100 -14.1 -4.07687 | opp_overlap 716082 GCGTAGAAATAAAAA CGCCCGG AAGT CCGGGCG TTTTAGGGGGGGCGT CJA_0589 727181 - 716124 - | Putative Ig domain family TERM 1004 716386 - 716374 - G 73 -9.1 -3.57263 | AGGTTCACTTTTAAA CCCTG TAC CAGGG TGAACCCCTGGGCAC TERM 1005 717197 - 717180 - G 70 -5.5 -4.30987 | ATCTTGGATAACAAA GTCGAAG ATGC CCCCGAC GGGTGTGTAACGACT TERM 1006 720983 - 720993 + g 70 -6.8 -4.11692 | CACTGTCGATCACTA TGGC ACT GCCA TTTTCCACATAGGTA TERM 1007 724544 - 724578 + g 71 -9.2 -3.42078 | overlap 724533 TATAGCTGGCACTGG TGGCGCCAGCGATCAG GGT CAGATTGGTGCCGCCA TTATCATCGGCTCTG TERM 1008 724844 - 724878 + g 71 -9.2 -3.42078 | overlap 724833 TATAGCTGGCACTGG TGGCGCCAGCGATCAG GGT CAGATTGGTGCCGCCA TTATCATCGGCTCTG TERM 1009 725144 - 725178 + g 71 -9.2 -3.42078 | TATAGCTGGCAGTGG TGGCGCCAGCGATCAG GGT CAGATTGGTGCCGCCA TTATCATCGGCTCTG TERM 1010 725443 - 725479 + g 77 -11.5 -3.22102 | overlap 725433 725441 GTATAGCTGGCACTG GTGGCGCCAGCGATCAG GGT CAGATTGGTGCCGCCAC TGTTATCGGCCCTGT TERM 1011 726989 - 727021 + g 72 -10.5 -3.02144 | opp_overlap 726988 726989, overlap 726998 727013 CGCCTGTGACAACAG TGGCAGCCTCGTGCA AAA TGCGTGTTGCTGCCA TATTGACAGCAGTAA CJA_0590 728069 - 727182 - | Sulfotransferase domain superfamily TERM 1012 727304 - 727322 + g 76 -3.8 -4.89966 | overlap 727286 727285 GCGGCAAAATACTGC GTCGGGTT TTA AACTCCAC TTTCTTTTTCACTGT TERM 1013 727866 - 727854 - G 86 -6.3 -5.14563 | GGCGTCATCAAAAAA CGAAT AGG ATTCG CTGTGGGCTCCCATT TERM 1014 728252 - 728228 - H 100 -10 -5.0925 | opp_overlap 728228 CGGTAAAAGCAAAAA GGGAAAGGCG TTTTG CACCCTTCCC TTTTTTTCAGGGCAA TERM 1015 728228 - 728252 + H 89 -6.3 -5.40072 | opp_overlap 728228 CGGTAAAAGCAAAAA GGGAAAGGCGT TTT GCACCCTTCCC TTTTTTTCAGGGCAA CJA_0591 728304 - 728459 + | hypothetical protein CJA_0592 729143 - 728616 - | microcystin dependent protein; MdpB CJA_0593 729675 - 729154 - | microcystin dependent protein; MdpB TERM 1016 729732 - 729708 - R 93 -10.1 -4.70659 | TGCGAGATGGAAAAA CGCCTTGCAAT GCA ATTGCAAAACG TAATACCAGGCTGGG CJA_0594 730419 - 729688 - | hypothetical protein CJA_0595 730576 - 730292 - | hypothetical protein TERM 1017 730463 - 730439 - GR 85 -7.1 -4.76274 | opp_overlap 730439 CAAATCAACAGAAAA GGCTTCATATC CTG GATCTGATGCC TTGGGTAGCGAAACC CJA_0596 731310 - 730801 - | acetyltransferase, GNAT family CJA_0597 731532 - 732308 + | hypothetical protein TERM 1018 733368 - 733356 - g 91 -3.3 -5.50499 | GCACAGCTAAAAAAA CGTGG TTA CAACG TTAAACCTTATCAAT CJA_0598 732525 - 733394 + | GumN protein superfamily CJA_0599 733414 - 734289 + | ABC transporter, ATP-binding protein TERM 1019 734459 - 734469 + G 80 -5.4 -4.99568 | AATGGCCGCTTTTTT GTAC GGA GTAC TTTTCTTTAGTGTTG TERM 1020 734592 - 734602 + G 86 -6.8 -4.88293 | TTACTGGGGTTTGCC CTGG TTG CCAG TTTGTTTTTGGCGTT CJA_0600 734286 - 735659 + | hypothetical protein TERM 1021 735823 - 735851 + G 70 -6.6 -4.07568 | overlap 735831 CATGACGGTTTCCAA GGCCTATAGCCT GCTGG AGGCAGAAGGCC TTTTGCAGCGACAGC CJA_0601 735662 - 736042 + | transcriptional regulator, GntR family TERM 1022 736127 - 736143 + F 72 -9.3 -3.52113 | overlap 736125 TGCGCCTGAGTCTGG CCGCCCC GGC GAGGCGG TGTTTATGAAGCCCT TERM 1023 736181 - 736154 - g 70 -9.9 -3.14132 | gap 1, opp_overlap 736156 736156 GGCGGTGTTTATGAA GCCCTGTCCCGG GTTTG CCGAGACAGG-C AAGCCGGCGCTGGTC TERM 1024 737573 - 737550 - g 100 -3.7 -6.02546 | overlap 737551 GCAAACGAAAAAAAA TCCAGCGCC GGCAGT AGCGCCGGT TCGAGTGAGAGTGTA TERM 1025 737572 - 737551 - g 72 -7.2 -4.19088 | overlap 737550 CAAACGAAAAAAAAT CCAGCGCC GGCAGT AGCGCCGG TTCGAGTGAGAGTGT CJA_0602 736149 - 737597 + | hydrolase, alpha/beta fold family domain protein TERM 1026 738111 - 738129 + G 72 -6.6 -4.15788 | overlap 738114 GCCTGGATGTGATTA CCACGCGC TCG GTGCGTCG TTTGTTGCACGAATT natA 737594 - 738361 + | sodium ABC transporter ATP-binding protein TERM 1027 738662 - 738648 - g 82 -3.4 -5.31275 | overlap 738650 GTTGAGCAGAAAAAA CTGGAC TAT GCCCTG ATCATCCCCGCTGAG TERM 1028 738764 - 738748 - g 71 -2.1 -4.95167 | opp_overlap 738749, overlap 738743 738749 CAACCAATAATAAAA TCCAGGG CAG CCTTGGT TTTATTCGCCAGCAG TERM 1029 738749 - 738763 + G 84 -7.8 -4.63218 | opp_overlap 738748 738743 738749 AACCAATAATAAAAT CCAGGG CAG CCTTGG TTTTATTCGCCAGCA TERM 1030 738902 - 738926 + G 74 -2.7 -4.89233 | TGAAAAAATGGGGCT CATGGTGATGC TGA GCTTGCCCATG TTTTTAGTGTTGCTG CJA_0604 738348 - 739538 + | ABC-2 type transporter CJA_0605 740143 - 739583 - | hypothetical protein CJA_0606 740646 - 740170 - | hypothetical protein CJA_0607 740903 - 741265 + | hypothetical protein CJA_0608 741344 - 741856 + | putative lipoprotein CJA_0609 742241 - 741909 - | hypothetical protein TERM 1031 741940 - 741956 + g 87 -4.4 -5.31158 | TCCGCTATTTTTTCA TCGACC CGCTC GGTTGA TTTTTCATTTTTTTG cpsA 742724 - 744115 + | capsular polysaccharide biosynthesis protein CJA_0611 744158 - 745312 + | hypothetical protein TERM 1032 745428 - 745460 + G 70 -11.2 -2.82623 | gap 1, overlap 745425 CCCTGTCGAATTTGC GCGCGCGCGAACAGG CAAG CAAGT-CGCGCGCGC TGATTATCCCACCGG TERM 1033 745609 - 745620 + G 82 -2.2 -5.36441 | GATTGACCAGCGGAT TGCT GCGG AGCG TTTTTTCTATAAGCA CJA_0612 745364 - 746572 + | hypothetical protein TERM 1034 746754 - 746742 - g 77 -6.2 -4.67353 | opp_overlap 746741 746742 TCACTTATGGAAAAA GGGC GCCGA GCCC GATTTTGATGTGTGT CJA_0613 746668 - 747489 + | hypothetical protein gt25A 747542 - 748294 + | glycosyl transferase, putative, gt25A CJA_0615 749921 - 748332 - | hypothetical protein TERM 1035 748373 - 748402 + gT 75 -9.9 -3.53563 | ATTTGTTGATCACCG GTTTTGCCCTGGC CGGT GCCAGGGCGGCGC TTTCGCCCAAAATGT TERM 1036 749031 - 749051 + gT 75 -11.3 -2.94218 | GGCCGGTAACAGGGT TTGCTCAAA GGG TTTGAGCAA TATGTCCTGCAGGAT TERM 1037 749112 - 749098 - GT 77 -3.4 -5.055 | overlap 749102 CCAACCCGGAAAAAA CCCATC GCC GCCGGG CCGAGCAATAAACCA TERM 1038 749391 - 749345 - GT 70 -9.3 -3.41051 | gap 2, overlap 749347 749368 TCAGGGCCAGGACAA TACCCAGCGCGCCG--GCGAGCA AAC TGCCCGCGACGGTGCGCAGGGCG ATGGTGCGAAAATCA TERM 1039 749389 - 749347 - GT 95 -14.1 -3.27653 | gap 2, overlap 749345 749368 AGGGCCAGGACAATA CCCAGCGCGCCG--GCGAGCA AAC TGCCCGCGACGGTGCGCAGGG CGATGGTGCGAAAAT gt4J-1 750898 - 749819 - | glycosyl transferase, putative, gt4J TERM 1040 750567 - 750544 - GR 73 -3.8 -4.82901 | gap 1, overlap 750549 CCTCGCTCATAAAAA TCAAACCGTCG CAG CGGCGG-CTGA ACCACTGCATGAACA TERM 1041 750563 - 750549 - GR 77 -7 -4.38116 | overlap 750544 CTCATAAAAATCAAA CCGTCG CAG CGGCGG CTGAACCACTGCATG gt26A 751644 - 750901 - | glycosyl transferase, putative, gt26A TERM 1042 751545 - 751528 - G 81 -4.7 -5.03314 | opp_overlap 751541 GGTATTGGCAAAAAA GACGGCC ATCT GGTCGCC GGCGCGCAGGTGCAT gt70A 752813 - 751641 - | UDP-GlcA beta-glucuronosyltransferase, putative, gt70A TERM 1043 752690 - 752668 - G 87 -4.6 -5.28176 | opp_overlap 752668, overlap 752670 CGCAGTGAGAAAAAA CGGGTCAGGC CGC GCCGGGCCAG TTCGCTGCTGATGAA cel5H 753897 - 752845 - | endo-1,4-beta glucanase, putative, cel5H TERM 1044 752913 - 752902 - G 72 -4.4 -4.61482 | overlap 752904 CGGGCGAAAAAAGAA TTGC CGTA GCAA GGCCCACTGGGCCGA TERM 1045 752926 - 752914 - G 74 -10.5 -3.14881 | opp_overlap 752915, overlap 752904 GAATTGCCGTAGCAA GGCCC ACT GGGCC GAGGGTTCGGTGCTG gt4J-2 755018 - 753894 - | glycosyl transferase, putative, gt4J TERM 1046 754000 - 753976 - G 73 -11.3 -2.71924 | overlap 753975 TAGCGGCGCGCAAAT GCCATAGCCGC CAG GCGGCGCTGGC GGTAGGCGTCCTCGC TERM 1047 754391 - 754406 + g 72 -6.8 -4.24342 | gap 1 CGGCGAACAGGTCCA GGGC-GC TGA GCAGCCC TTTGTTACTCGACCA TERM 1048 754741 - 754729 - G 100 -7.7 -5.28826 | AAATCGTAGAAAAAA TCCAC ACC GTGGA CATGCACCACATCCG CJA_0621 756301 - 755021 - | putative GumE protein TERM 1049 755231 - 755211 - G 75 -6.7 -4.39426 | opp_overlap 755211 755215, overlap 755219 TACAGGGCGATAAAA GCACGGAAG CGG CGCCCGCGC TCATCTGTTATGGGC epsG 757244 - 756327 - | EpsG TERM 1050 756450 - 756431 - G 72 -10 -3.28712 | gap 1 GGGTTTTGGTGACAA CCAGTGCGG CAC CCGC-CTGG GCGGCGACCAGTTGG TERM 1051 756885 - 756864 - G 77 -12.3 -2.70932 | opp_overlap 756879 GCCCTGGTTGAAGTA GCGCAGCAA GAGT TCGCTGCGC AGGCTGCGCAAGGCT CJA_0623 758636 - 757284 - | putative chain length determinant protein EpsF TERM 1052 757921 - 757948 + g 81 -11.2 -3.70902 | overlap 757919 CTGTTGGCATTGCGT GTCGCTGCACTC AGTT GGGTGCTGCGGC TTTCACTATCGAGGC epsE 759497 - 758682 - | EpsE CJA_0625 759521 - 759631 + | hypothetical protein TERM 1053 759827 - 759802 - f 100 -10.5 -5.95286 | opp_overlap 759801 759802 ATGAAAAATAAAAAA GGTTTGCAAGC GCTA ACCTGCAAACC CTTTCCAGATATGGT aroA 760137 - 761423 + | 3-phosphoshikimate 1-carboxyvinyltransferase CJA_0628 761423 - 761842 + | thioesterase family protein domain protein TERM 1054 761873 - 761897 + F 100 -8.5 -5.49234 | overlap 761861 TATTGGCTTCCGAAG GCCGCTTGTAG ATG CTGCAGACGGC TTTTTTATTGCGTAT TERM 1055 761933 - 761946 + F 70 -2.3 -4.93877 | AAACTCAGGGGATAT TCGGG GATG CCCTA TTTTGTTTCCTCGGG CJA_0629 762136 - 762678 + | PEP-CTERM putative exosortase interaction domain protein CJA_0630 763536 - 762865 - | hypothetical protein TERM 1056 763009 - 762988 - G 77 -3 -5.15526 | overlap 762961 762990 ACACAAAATCAAAAA TCCCATGA TTTTGG TCATGGCA TGCAGACCGTTCACA TERM 1057 763632 - 763585 - RH 100 -12.7 -5.00616 | gap 1, opp_overlap 763584 763593, overlap 763588 763590 GCCTGTTGCAAAAAA GCACAGCTGCCGCCACGCCTTG ATTGG CAAGGCCTGGCGGCAGG-GCTC TACATGCTATTCAAG TERM 1058 763629 - 763588 - RH 100 -15.2 -3.37655 | gap 1, opp_overlap 763584 763593, overlap 763585 763590 TGTTGCAAAAAAGCA CAGCTGCCGCCACGCCTTG ATTGG CAAGGCCTGGCGGCAGG-G CTCTACATGCTATTC TERM 1059 763628 - 763590 - RH 100 -18.9 -3.25177 | opp_overlap 763584 763593, overlap 763588 763585 TTGCAAAAAAGCACA GCTGCCGCCACGCCTTG ATTGG CAAGGCCTGGCGGCAGG GCTCTACATGCTATT CJA_0631 764576 - 763689 - | Domain of unknown function (306) family TERM 1060 764927 - 764910 - gRH 70 -3.5 -4.60713 | gap 1 TAAAACATGATAAAA CTTT-GGT TCA ACCGAAAG GAAAACACCAAGGTA TERM 1061 765101 - 765118 + GrH 71 -6.9 -4.02542 | opp_overlap 765104, overlap 765104 CCCGAAGAGTTCCAG CAACGCC TGTG GGCGATG TTTAATTATCAATTT CJA_0632 764567 - 766402 + | putative DNA helicase II CJA_0633 769673 - 768417 - | Piwi domain protein TERM 1062 768500 - 768523 + Gg 83 -12.4 -3.35996 | opp_overlap 768501, overlap 768501 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 1063 768501 - 768522 + Gg 95 -15.9 -2.61383 | opp_overlap 768501, overlap 768500 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 1064 768522 - 768501 - Gg 100 -15.9 -5.71983 | opp_overlap 768501 768500 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_0634 767378 - 768529 + | ISCja2, transposase TERM 1065 768549 - 768565 + gT 74 -2.2 -5.15634 | gap 1 AACTATGGGACAGCA GTG-GCC ATCA GGCTCGC TTTTTTGCTGGGGTG TERM 1066 769547 - 769533 - GT 79 -8.6 -4.21936 | CGTATAAGTCGAAAA TACAGC ACT GCTGTA GCCTCCATAACGGTC CJA_0635 771541 - 769670 - | hypothetical protein TERM 1067 770209 - 770231 + g 72 -7.7 -3.8647 | GTGCGTGCCCTTTGC GCCGTAACT TCGGC AGTAACGGC TTTCGTCTGCTGAGT CJA_0636 773983 - 771596 - | type I restriction-modification system, S subunit TERM 1068 772146 - 772159 + g 74 -2.3 -5.09895 | GTTCGACCAAAGTAT CTGGC ATTG GCGAG TTTTTTGACTGCGTA TERM 1069 772466 - 772513 + g 95 -11 -4.55295 | opp_overlap 772499 TGCAGCCCCTTCTGC TATTTTCCGTATTTCTTCATAA ATTT TTATGAAGAAATACTTAAGATA TTTCTTTGTACCAGA TERM 1070 773087 - 773065 - G 85 -12 -3.63627 | overlap 773066 CCTTGACAGTGTAAA GCTCGCCGAA GTG TTCGGCGAGA AAGGACTGGGCGTGT TERM 1071 773086 - 773066 - G 95 -15.5 -2.77962 | overlap 773065 CTTGACAGTGTAAAG CTCGCCGAA GTG TTCGGCGAG AAAGGACTGGGCGTG TERM 1072 773176 - 773192 + g 78 -7.9 -4.43844 | TTCGGCGCTTTTCCT GCTGGGC AGC GCGCAGC TTTTCTAGCTCGTCG TERM 1073 773430 - 773397 - G 77 -6.7 -4.58585 | gap 1, opp_overlap 773419 773422, overlap 773399 773416 TATTCAAATAATAAA GTGCATCGTG-GCCGT ATA ACGGCACAGAATGCGC CGAAGGTACATTCCC TERM 1074 773432 - 773416 - G 72 -10.1 -3.28791 | opp_overlap 773419 773422, overlap 773399 773397 ATCGTGGCCGTATAA CGGCACA GAA TGCGCCG AAGGTACATTCCCTG rhuM 775034 - 773976 - | RhuM-like protein TERM 1075 774775 - 774809 + g 80 -11.6 -3.30028 | opp_overlap 774781, overlap 774778 TAGGTTTTGCCATCG GAAGCAGTTATTCGAA ATT TTCTAATAACTGCCTC TTCCTGTAACTCTTT TERM 1076 774778 - 774806 + g 72 -11.9 -2.52023 | opp_overlap 774781, overlap 774775 GTTTTGCCATCGGAA GCAGTTATTCGAA ATT TTCTAATAACTGC CTCTTCCTGTAACTC hsdM 776503 - 775031 - | type I restriction-modification system, M subunit TERM 1077 775243 - 775279 + g 100 -2.1 -5.76949 | overlap 775261 TCCAGGCATGCTCGG TGGTTTTGCGGCGTT TGCGTTC GGCGCCGCCCCACCA TTTTTTTTCCAGGTC TERM 1078 775776 - 775819 + g 84 -3.9 -5.24129 | opp_overlap 775776 GTGGGCACTTCAATA CCG-TGCAGCATCATATTGGT GATG GCCAGCATG-TGCGGCAGCGG TTTTTTCTCGACACC TERM 1079 775940 - 775917 - G 78 -7.4 -4.4009 | gap 1, opp_overlap 775925 775926, overlap 775920 775921 GCGCAGGTGAGAAAA CCACCCGTGCC GCA GGCA-GGGTCG AAAATACTTTCGCCC TERM 1080 776023 - 776049 + g 84 -3.6 -5.17353 | overlap 776025 776025 AGTACTCCCCGGCAT TGCCTGCCGATT GCA GGTCGGCAAGGA TTTTTTCGTAGATGT CJA_0639 778906 - 776516 - | type I restriction-modification system, R subunit TERM 1081 776888 - 776908 + g 73 -3.9 -4.77173 | overlap 776878 TATGCCTTGCTCGGC CAGTTCGTC GAT GATGGCCTG TTTCTTTTCTGCCCC TERM 1082 777532 - 777557 + g 71 -3.4 -4.86731 | gap 1, opp_overlap 777538 CTTCCTCGTTATCGC CAGT-AATACG CATCA CGTATTTGCTG TTTTCTTTAACCAGA TERM 1083 777655 - 777683 + g 82 -7.5 -4.56775 | opp_overlap 777655 TGGTTTTATCAAAAC GGTTAGTGGCTTT TAA AAAATCACTGACC TTTTTAGCGACCAGT CJA_0640 779236 - 778979 - | hypothetical protein TERM 1084 779343 - 779360 + r 73 -9.9 -3.40639 | GTTATATCGGTAGAG TCCTCAC AAGT GTGAGGA TTAATTAGTGGGGTT TERM 1085 779391 - 779408 + r 82 -11.3 -3.60475 | opp_overlap 779391 TTAGCGCAATAAAAA GCCACCT TGTG AGGTGGC TTTGGAGTCAAGCTT TERM 1086 779408 - 779391 - R 100 -11.3 -5.08601 | opp_overlap 779391 TTAGCGCAATAAAAA GCCACCT TGTG AGGTGGC TTTGGAGTCAAGCTT ychF 780526 - 779435 - | GTP-binding protein YchF TERM 1087 779741 - 779764 + g 75 -4.5 -4.74611 | GTTGAGGCCGGGTTC TTCCATGCC CATTTC GGCGAGGAA TTCTTTTTTGTCATC TERM 1088 779950 - 779961 + g 74 -2.2 -5.1675 | TAAGCAGGTTGATTT CCTT GAGC AGGG TTTTTTCCTCGGTGC pth 781337 - 780594 - | peptidyl-tRNA hydrolase TERM 1089 781290 - 781267 - GR 100 -12.4 -5.49234 | ACAGGCAATAAAAAA GGGCAGGGTC CGAA GACACTGCCC TTGGCGAATAGAAAA TERM 1090 781320 - 781307 - GR 74 -2.3 -5.0916 | overlap 781308 TGGCGAATAGAAAAA TCCGA TTAC TCGGC AGCTTCTTCGCTTTC CJA_0643 781923 - 781312 - | ribosomal protein L25, Ctc-form TERM 1091 781996 - 781983 - R 84 -8.1 -4.57073 | opp_overlap 781971 GAGGGGTTTTAAAAA CCCTG TTGC CAGGG CGGTTAGCTGGGTGC prs 782963 - 782022 - | ribose-phosphate pyrophosphokinase ispE 784140 - 783295 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 1092 783739 - 783772 + g 74 -11.1 -3.14211 | gap 1, opp_overlap 783726 783724 783737, overlap 783741 CACGGGCACATCAGC GC-CCAGTTGCAAGCC CAG GGTTTGCAACTGCTGC TTGCTGAGGCCGCAT TERM 1093 783741 - 783769 + g 77 -12.5 -2.77899 | opp_overlap 783726 783724 783737, overlap 783739 CGGGCACATCAGCGC CCAGTTGCAAGCC CAG GGTTTGCAACTGC TGCTTGCTGAGGCCG lolB 784754 - 784143 - | outer membrane lipoprotein LolB TERM 1094 784382 - 784410 + g 93 -8.8 -4.73388 | gap 1, overlap 784400 CCCAGTAGCTGAGCT GGCTGACTGGCAG CGTC CAGCCGG-CAGCC TTTTTAATCAGGCTT TERM 1095 784570 - 784582 + g 76 -9.1 -3.73224 | TGCTGCCATTTGAGG GTGGC GCT GCCAC TTTCCTGCGGGCTGC CJA_0648 786580 - 784754 - | TPR domain protein TERM 1096 784793 - 784818 + g 100 -3.1 -5.626 | overlap 784796 GAGGGTGGAGCGAAG CAGGGGATGGG TTTT CCCTTCGCGTG TTTTTTTCTGCAATC CJA_0649 786672 - 786770 + | hypothetical protein CJA_0650 787403 - 786858 - | hypothetical protein TERM 1097 788163 - 788184 + G 78 -7.9 -4.36914 | gap 1, overlap 788160 788166 CCGCACCCTGGATCG CGCCCAGCGC CTG GCGC-GGGAG TTTTATGGCGAGGCC hemA 787459 - 788832 + | glutamyl-tRNA reductase TERM 1098 788879 - 788853 - g 77 -6.7 -4.58395 | gap 2 TCCATTCTTGAAAAA CTCG-AACGC-CT TAA AGAGCGTTACGAG GAAGTCAGTGCACTG TERM 1099 789568 - 789553 - g 72 -4.7 -4.66318 | overlap 789555 789557 AGCACGTTAACAAAA CGGAT TCGGCG ATCCG TATCACCCATATTCC prfA 788829 - 789911 + | peptide chain release factor 1 TERM 1100 790351 - 790331 - g 86 -3.9 -5.37345 | GCCAACGAGAAAAAA CACTGGCAA GTA TTGGCTGTG GATCGATCCGCGGAT CJA_0653 789968 - 790765 + | methyltransferase, HemK family moeB 790768 - 791532 + | molybdopterin biosynthesis MoeB protein TERM 1101 791631 - 791614 - f 73 -7.7 -4.07568 | opp_overlap 791628, overlap 791615 TCTTGGGGCTGAAAA CCAGGGA TGAT TCCCTGA ATGCTTTCAGTTTGT TERM 1102 791628 - 791641 + F 70 -5.3 -4.41114 | opp_overlap 791615 791614 ACCAGGGATGATTCC CTGAA TGCT TTCAG TTTGTTATCTCATCA CJA_0655 791683 - 793026 + | hypothetical protein CJA_0656 793051 - 794289 + | peptidase, M48 family TERM 1103 794348 - 794309 - Tf 75 -9.6 -3.55444 | gap 1, opp_overlap 794318, overlap 794318 CCGGTATCTGTCAAA TAATAAAAA-CGGCAGGAA CAT CTCCTGCTGTTTTTTATTA ATCCACGATATTGCT TERM 1104 794338 - 794318 - Tf 95 -7.5 -5.38549 | opp_overlap 794318, overlap 794309 GTCAAATAATAAAAA CGGCAGGAA CAT CTCCTGCTG TTTTTTATTAATCCA TERM 1105 794318 - 794338 + TF 100 -9 -5.5112 | opp_overlap 794309 794318 GTCAAATAATAAAAA CGGCAGGA ACATC TCCTGCTG TTTTTTATTAATCCA CJA_0657 795364 - 794363 - | kinase, pfkB family TERM 1106 795449 - 795462 + GH 82 -3.1 -5.22312 | gap 1, overlap 795449 795450 CCGGATTAAACGCCT G-CGGA TTT TCCGGC TTTTTTCATCTCAGT CJA_0658 795357 - 795506 + | hypothetical protein TERM 1107 796916 - 796902 - g 71 -3.4 -4.87665 | opp_overlap 796904, overlap 796903 796904 TGTGAGCGATAAAAA TCCCCG CTT CGAGGG CTTTAACCGGGTATT TERM 1108 797158 - 797139 - g 72 -10 -3.32343 | GGCACATTCCTACAA CCAGGCAA CCGC TCGCCTGG GGATGACACTGGGAT gt51C 795529 - 797865 + | murein polymerase, putative, gt51C CJA_0660 798035 - 798754 + | hypothetical protein algT 798759 - 799307 + | RNA polymerase ECF-type sigma factor CJA_0662 799334 - 799672 + | hypothetical protein TERM 1109 799739 - 799717 - T 100 -11.3 -5.63517 | opp_overlap 799717 GTTTGAAATAAAAAA CGGCCACAT ATACG ACGTGGCCG TTTTTATGTTGTCAG TERM 1110 799717 - 799739 + T 100 -9.1 -5.1523 | opp_overlap 799717 GTTTGAAATAAAAAA CGGCCACAT ATACG ACGTGGCCG TTTTTATGTTGTCAG CJA_0663 800222 - 799770 - | hypothetical protein ilvB 800619 - 802433 + | acetolactate synthase, large subunit, biosynthetic type ilvN 802435 - 802926 + | acetolactate synthase, small subunit TERM 1111 802972 - 802947 - f 95 -11.9 -3.84712 | opp_overlap 802947 CAACTCCACATCAAA GGCCGAAGTTT GCAA AAGCTTCGGCC TTTTTCTTTGGTGAT TERM 1112 802947 - 802972 + F 100 -14.1 -5.34309 | opp_overlap 802947 CAACTCCACATCAAA GGCCGAAGTTT GCAA AAGCTTCGGCC TTTTTCTTTGGTGAT CJA_0666 802990 - 803553 + | possible DNA-3-methyladenine glycosidase CJA_0667 804492 - 803554 - | LysR substrate binding domain protein ilvC 804589 - 805605 + | ketol-acid reductoisomerase TERM 1113 805624 - 805641 + F 100 -14.1 -5.63517 | opp_overlap 805624 TGACGATTATGAAAA GCGCGGC TCTT GCCGCGC TTTTTTGTTTGAGCG TERM 1114 805641 - 805624 - f 100 -14.1 -4.32034 | opp_overlap 805624 TGACGATTATGAAAA GCGCGGC TCTT GCCGCGC TTTTTTGTTTGAGCG pssA 805687 - 806541 + | phosphatidylserine synthase TERM 1115 806622 - 806602 - f 80 -6.7 -4.77036 | TCTGATTATCAAAAA CCCCTTGCC AAT GCCCAGGGG CGTGCCTATAGTGCG TERM 1116 806720 - 806708 - f 74 -3.5 -5.055 | opp_overlap 806708 CGAAGCTGTAAAAAA TTAAT GAA ATTAA TCATTTACAGCGCAA TERM 1117 809772 - 809760 - f 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGATCCT TERM 1118 810564 - 810548 - f 79 -9.4 -4.08546 | overlap 810561 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGGAAGACCAA TERM 1119 812498 - 812474 - f 100 -13.6 -3.76373 | gap 1, opp_overlap 812474 CGCCTAATACTGAAA CCCCCTGTGGC AGCC GCC-CAGGGGG TTTTTATTTTTCTGG TERM 1120 812474 - 812498 + F 100 -13.6 -5.69262 | gap 1, opp_overlap 812474 CGCCTAATACTGAAA CCCCCTGTGGC AGCC GCC-CAGGGGG TTTTTATTTTTCTGG TERM 1121 812683 - 812703 + G 72 -4.7 -4.64676 | GACCATTGATCTTCA TGCCATTTG TGC TAATTGGCA TTTTCTTAAAAATCA TERM 1122 812856 - 812843 - g 72 -8.1 -4.00042 | TTTGCTACCAAAGAA GAGGC ACTT GCCTC CGGTTTGAATGGTGA alr 812609 - 813748 + | alanine racemase CJA_0677 813752 - 814756 + | biotin-[acetyl-CoA-carboxylase] ligase CJA_0678 814753 - 815511 + | transcriptional activator, putative, Baf family CJA_0679 815517 - 816218 + | Sporulation related repeat family TERM 1123 816735 - 816719 - f 73 -10.9 -2.62616 | overlap 816721 TCAGTTGGTAGAGCA CACCCTT GGT AAGGGTG AGGTCGGCAGTTCAA TERM 1124 816775 - 816798 + F 100 -11 -5.4492 | opp_overlap 816774 816775 TGAGCTCCATAACAT GCTGCGGAAG GTAT CTTTCGCGGC TTTTTTGTCTGTGTA CJA_0684 816845 - 818068 + | translation elongation factor Tu TERM 1125 818076 - 818100 + F 100 -15.8 -3.80094 | overlap 818095 TTCAGTAAGTGTTTG CAGCAGCCGT ATTAA ACGGCTGCTG TTCTATTGATTTAGG TERM 1126 818162 - 818152 - f 71 -6.8 -4.07568 | CGTCGGTCTCCAAAA CCGA ATG TCGG GGGTTCGAGTCCCTC secE 818209 - 818577 + | preprotein translocase, SecE subunit nusG 818585 - 819118 + | transcription termination/antitermination factor NusG TERM 1127 819139 - 819164 + F 100 -14.1 -4.46493 | ATTATGTTTCAAGTG CCCTTCTTTGC TTTC GCAAAGAGGGG TTTTCGTGTCTTTGA rplK 819275 - 819706 + | ribosomal protein L11 rplA 819709 - 820404 + | ribosomal protein L1 TERM 1128 820665 - 820655 - g 90 -6.8 -5.15969 | CTCGAAGGCAAAAAA GCGA TTG TCGC AGAAGTCCAGGAAGC CJA_0690 820628 - 821122 + | 50S ribosomal protein L10 rplL 821189 - 821557 + | ribosomal protein L7/L12 TERM 1129 821600 - 821626 + F 100 -16.6 -5.28983 | opp_overlap 821597 821600 ACAGCTTGAACACCA GGCTGGTGAGCT ATA GGCTCGCCAGCC TTTTTCTGTTTTCAG TERM 1130 821626 - 821600 - f 83 -13.7 -2.74701 | opp_overlap 821600, overlap 821597 ACAGCTTGAACACCA GGCTGGTGAGC TATAG GCTCGCCAGCC TTTTTCTGTTTTCAG TERM 1131 824817 - 824807 - g 74 -2.4 -5.03747 | overlap 824808 AAAGGCGTGAAAAAA GGGG AGG CCCT GACTCACGACATTCT TERM 1132 825797 - 825787 - g 80 -5.4 -4.91459 | overlap 825775 CAAGATGTACAAAAA CATC GTG GATG GCGATCATCGGATGG rpoB 821813 - 825898 + | DNA-directed RNA polymerase, beta subunit TERM 1133 825953 - 825899 - f 82 -12.1 -3.40163 | GAGCAGGAAGATTAA CTTCCCTGCCCATACCTGAGCCAGC CGTGT GCCGGCTCAGGTATCGCCAGCTCAG TAATACCGAAGAATT TERM 1134 826160 - 826181 + G 81 -8.7 -4.38927 | CTATTAACTACCGTA CCTTCAAGC CCGA GCGTGAAGG TTTGTTCTGTGCCAA TERM 1135 827825 - 827815 - g 81 -4.6 -5.03314 | CCCATGGTGAAAAAA GCCA TTT CGGC GGTGATCAACTACTG TERM 1136 829930 - 829908 - g 100 -13.4 -4.70319 | opp_overlap 829923, overlap 829926 829929 TGAGGAAAACGAAAA GCTGCGTGCC GAA GGCAAGCAGC CCGCACACTACGAGC rpoC 825925 - 830241 + | DNA-directed RNA polymerase, beta' subunit TERM 1137 830227 - 830251 + F 71 -10.1 -3.23152 | opp_overlap 830218 ACTGAAGCCCTGAAG TCCAGTGTG AGCTAAG CACACTGGA TTCATAGATTCATGT TERM 1138 830319 - 830297 - f 95 -13.5 -4.19704 | opp_overlap 830297, overlap 830300 GAACGTCAGGCAAAA CAAGGCTGG CAACC CCAGCCTTG TTTTTTTGTTGATTG TERM 1139 830297 - 830319 + F 100 -13.5 -5.87996 | opp_overlap 830297 830300 GAACGTCAGGCAAAA CAAGGCTGG CAACC CCAGCCTTG TTTTTTTGTTGATTG TERM 1140 830316 - 830300 - f 83 -9.4 -4.21812 | opp_overlap 830297, overlap 830297 CGTCAGGCAAAACAA GGCTGG CAACC CCAGCC TTGTTTTTTTGTTGA rpsL 830509 - 830895 + | ribosomal protein S12 rpsG 831020 - 831490 + | ribosomal protein S7 TERM 1141 831505 - 831534 + F 89 -9.3 -4.59109 | opp_overlap 831512, overlap 831506 831512 ATCATCTGTCCCGGA TGAAAAAGGCAGC CCTC GCTGCCTTTTACC TTTTTACAGCATGTA TERM 1142 831506 - 831533 + F 85 -12.8 -3.34984 | opp_overlap 831512, overlap 831505 831512 TCATCTGTCCCGGAT GAAAAAGGCAGC CCTC GCTGCCTTTTAC CTTTTTACAGCATGT TERM 1143 831527 - 831512 - f 93 -10.4 -4.72272 | opp_overlap 831512 831506 831505 GTCCCGGATGAAAAA GGCAGC CCTC GCTGCC TTTTACCTTTTTACA TERM 1144 831512 - 831527 + F 93 -10.4 -4.4874 | opp_overlap 831512, overlap 831506 831505 GTCCCGGATGAAAAA GGCAGC CCTC GCTGCC TTTTACCTTTTTACA CJA_0696 831568 - 833688 + | translation elongation factor G CJA_0697 833725 - 834948 + | translation elongation factor Tu TERM 1145 834962 - 834993 + F 80 -9.5 -3.95584 | opp_overlap 834962 834967, overlap 834968 AATAGCTGGCAGATA TAAAGGGCGGGTC TTTAAT GGCCCGCTTTTTA TTTGGTTAGTCAAAA TERM 1146 834968 - 834987 + F 100 -8.5 -5.38326 | opp_overlap 834967 834962, overlap 834962 TGGCAGATATAAAGG GCGGGTC TTTAAT GGCCCGC TTTTTATTTGGTTAG rpsJ 835167 - 835478 + | ribosomal protein S10 TERM 1147 835859 - 835878 + G 73 -3.6 -4.84359 | overlap 835866 GCCTTTGAAGTAGGT GCTTCT CTGACTGT AGAAGC TTTTTCTGCAGGTCA rplC 835577 - 836221 + | ribosomal protein L3 rplD 836242 - 836856 + | ribosomal protein L4/L1 family rplW 836853 - 837149 + | ribosomal protein L23 rplB 837163 - 837990 + | ribosomal protein L2 rpsS 838025 - 838303 + | ribosomal protein S19 rplV 838316 - 838648 + | ribosomal protein L22 TERM 1148 838730 - 838710 - g 85 -6.9 -4.77036 | opp_overlap 838727 GGGTATCATCAAAAA GCATACC TCCGTAT GGTATGC CGATGGCACTGATTA rpsC 838660 - 839340 + | ribosomal protein S3 rplP 839353 - 839766 + | ribosomal protein L16 rpmC 839763 - 839957 + | ribosomal protein L29 rpsQ 839959 - 840225 + | ribosomal protein S17 TERM 1149 840212 - 840237 + F 72 -6.2 -4.26079 | AAATTGAAGAGCGTG CTGCTGAAGT TTAAGT GCTTCAGTAG TTTTAGATAGTTTCG rplN 840263 - 840631 + | ribosomal protein L14 TERM 1150 840820 - 840809 - g 72 -5.8 -4.35327 | opp_overlap 840808 GCACCAAAAACCAAA CCCA CAAT TGGG CGTTGCTGGTGGAAT rplX 840666 - 840983 + | ribosomal protein L24 rplE 840990 - 841529 + | 50S ribosomal protein L5 rpsN 841540 - 841845 + | ribosomal protein S14p/S29e rpsH 841876 - 842268 + | ribosomal protein S8 rplF 842282 - 842815 + | 50S ribosomal protein L6 rplR 842825 - 843175 + | ribosomal protein L18 rpsE 843185 - 843697 + | ribosomal protein S5 TERM 1151 843710 - 843698 - f 70 -9.1 -3.36581 | opp_overlap 843698 843695 GAAATTCTGAACTAA TCGGC TTG GCCGA TGATTAGCTGGCGGA rpmD 843727 - 843918 + | ribosomal protein L30 rplO 843920 - 844354 + | ribosomal protein L15 TERM 1152 844405 - 844433 + G 85 -8.7 -4.55887 | opp_overlap 844404 844405, overlap 844398 844410 TAGCCAATCAAAGAG GCTTGGGCGAGCT TTG GGCTCGCCTTCGC TTTCTGTTTTTGGCG TERM 1153 844410 - 844428 + G 83 -12.4 -3.40392 | opp_overlap 844405 844404, overlap 844405 844398 AATCAAAGAGGCTTG GGCGAGCT TTG GGCTCGCC TTCGCTTTCTGTTTT TERM 1154 845537 - 845552 + G 79 -4.6 -4.90778 | GGAGTTTCTGATTGT GGTCAC TAAT GTGCCC TTTTATTTAGGTGGA CJA_0719 844365 - 845702 + | preprotein translocase, SecY subunit CJA_0720 845725 - 845841 + | ribosomal protein L36 TERM 1155 845858 - 845893 + F 100 -16.4 -3.74747 | gap 1, overlap 845860 TCAGGCCTTATTTGG CA-TCAGGCAGGTTGAC TCT GTTAACCTGCCTGAATG TTTAATAAAGGTTGA TERM 1156 845860 - 845890 + F 100 -19.2 -2.66873 | overlap 845858 AGGCCTTATTTGGCA TCAGGCAGGTTGAC TCT GTTAACCTGCCTGA ATGTTTAATAAAGGT rpsM 846063 - 846419 + | ribosomal protein S13p/S18e rpsK 846471 - 846866 + | ribosomal protein S11 rpsD 846882 - 847502 + | ribosomal protein S4 TERM 1157 848499 - 848485 - g 74 -7.8 -4.07885 | opp_overlap 848485 TATGCGTTTGGAAAA CTGGCC GCC AGCCAG TTTAAAGAACGACTA rpoA 847529 - 848515 + | DNA-directed RNA polymerase, alpha subunit rplQ 848612 - 849010 + | ribosomal protein L17 TERM 1158 849060 - 849025 - T 100 -15 -3.2963 | gap 1, opp_overlap 849034, overlap 849034 AGTATCTGCTGATAA CATAAAAAA-CCGGGCC ATG AGCCCGGTTTTTTTATG TCGGAAGAAAAGTGG TERM 1159 849034 - 849050 + T 100 -10.8 -5.71712 | opp_overlap 849025 849034 TGATAACATAAAAAA CCGGGC CATGA GCCCGG TTTTTTTATGTCGGA TERM 1160 849050 - 849034 - T 100 -11.5 -5.5208 | opp_overlap 849034, overlap 849025 TGATAACATAAAAAA CCGGGCC ATG AGCCCGG TTTTTTTATGTCGGA TERM 1161 849109 - 849124 + T 89 -4.6 -5.68039 | overlap 849111 ACAGCATCCTTGCTG TTGGCG TGCG CGCCTA TTTTTTTGTCGCTTT TERM 1162 849111 - 849122 + T 77 -7.2 -4.46105 | overlap 849109 AGCATCCTTGCTGTT GGCG TGCG CGCC TATTTTTTTGTCGCT uvrA 851971 - 849122 - | excinuclease ABC, A subunit TERM 1163 852654 - 852702 + G 70 -6.5 -4.18018 | overlap 852666 GTCCTTTTCGGTGGC GATGACATTGGGGCCCGTCCTGG CAG CCTGGGGGGGCGTTGGTGCCATC TTTTGGCTAACCGCC TERM 1164 853219 - 853196 - g 72 -6.6 -4.25104 | CGCTGGTGAGTAAAA TCGCCCCGGC GGGA GCCAAGGGGA CGGCTACGGGGATTT CJA_0727 852127 - 853578 + | major facilitator family transporter TERM 1165 853862 - 853844 - g 79 -2.3 -5.19879 | gap 1, overlap 853846 CTGGAAAGACAAAAA CACC-GGG CAGG CCCAGGAG CGTACCGAATGGCAC TERM 1166 853859 - 853846 - g 70 -5.9 -4.22132 | overlap 853844 GGAAAGACAAAAACA CCGGG CAGG CCCAG GAGCGTACCGAATGG ssb 853596 - 854303 + | single-stranded DNA-binding protein TERM 1167 854343 - 854324 - f 100 -10.6 -5.09225 | opp_overlap 854325, overlap 854325 ACCTTACCTAAAAAA GCCGGGGC ATTT GCCCCGGT TTTTTTAACGGTTTT TERM 1168 854325 - 854342 + F 100 -14.1 -5.4477 | opp_overlap 854324 854325 CCTTACCTAAAAAAG CCGGGGC ATTT GCCCCGG TTTTTTTAACGGTTT TERM 1169 854342 - 854325 - f 93 -14.1 -3.64812 | opp_overlap 854325, overlap 854324 CCTTACCTAAAAAAG CCGGGGC ATTT GCCCCGG TTTTTTTAACGGTTT TERM 1170 854675 - 854655 - g 74 -3.2 -4.89393 | TAAAGTTGATAAAAA TGCGAGCA GTTTG CGCTCCCA GCAAACAAAAACGAT TERM 1171 855182 - 855159 - g 72 -10.3 -3.33696 | CGGGGTGGCAATTAA TCCGCAGCT GCAGGT AGCCGCGGA AACCTCGGAGGAAGA TERM 1172 855485 - 855462 - g 72 -6.6 -4.19238 | opp_overlap 855481 GGTGGAAGGGCAAAA GCCGGAATCA CTGC TGCTGCCGGC CAAGTTGGTTGTGCG CJA_0729 854494 - 855534 + | transcriptional regulator, LacI family TERM 1173 855592 - 855617 + T 100 -14.7 -5.66684 | opp_overlap 855592 AGCCCCATAAAAAAA GCCCGTGCCAT ATCA ATGGCCCGGGC TTTTTTTATGGGTTG TERM 1174 855617 - 855592 - T 100 -14.7 -5.61596 | opp_overlap 855592 AGCCCCATAAAAAAA GCCCGTGCCAT ATCA ATGGCCCGGGC TTTTTTTATGGGTTG CJA_0730 857184 - 855637 - | transporter, major facilitator family TERM 1175 856337 - 856327 - G 74 -3.2 -4.95806 | AAACCAGGAGAAAAA CTGC ACA ACAG CCAATTGGCGCATGG TERM 1176 856793 - 856779 - G 85 -8.6 -4.58283 | TAAGTCCGCCAAAAA TCATGG GTG CCATGA TGGAGACAAAGAGCG TERM 1177 856845 - 856806 - G 93 -13 -3.6269 | gap 1, overlap 856804 TGATGGAGACAAAGA GCGGC-GCATTGGGCAT TAGCAAC ATGCCCAATGCCGCGGC GATGGCGCCGCCCAG TERM 1178 857212 - 857182 - G 100 -18.4 -5.1675 | opp_overlap 857180 857178 TGAGTGATTAAAAAA CAACTGCGGAACCC GTC GGATTCCGCAGTCG GATGTTGATCGGATA gla15 859643 - 857232 - | glucan 1,4-alpha-glucosidase, putative, gla15A TERM 1179 858463 - 858426 - G 91 -12.8 -3.81137 | gap 1, overlap 858427 TTGCAAATATTCAAA GGCT-ACCCTGGGCGAT TGCGT ATCGCCCAGGGCGAGCA TTGCCATGGCGACCT TERM 1180 858462 - 858427 - G 100 -16.3 -2.882 | gap 1, overlap 858426 TGCAAATATTCAAAG GCT-ACCCTGGGCGAT TGCGT ATCGCCCAGGGCGAGC ATTGCCATGGCGACC TERM 1181 858871 - 858907 + g 90 -7.9 -4.93296 | AATTGCAAGGTCATC CCCACATTGCCGGCGGT ATC ACCGGTGGTGGTGTAGG TTTTTGTCATGCTGC TERM 1182 859283 - 859297 + g 100 -5.7 -5.5112 | TCAGATAACTGATTT CGGAT TGGGT ATCCG TTTTTTCTTCATCAA TERM 1183 859544 - 859517 - G 72 -7.6 -3.95022 | gap 1, opp_overlap 859517 859515 CCGAGTAAGACCAAA GCG-CAGGAGCAC CGG GGGCACCTGGCGC TGTTTGATCTGTTGT TERM 1184 859626 - 859605 - G 86 -3.7 -5.4505 | opp_overlap 859618, overlap 859606 GGCGGCAACAAAAAA CGCACTG CTGATGGC CAGTGCA AACAGGCTTCTTTTC TERM 1185 859867 - 859827 - H 77 -10.5 -3.43492 | overlap 859830 TTAGACTCATCACAA GCAGGTGCATACGTATTCA CGC TGCATACGTATGCAACAAC AAAAGCCTAGCTGAG TERM 1186 859864 - 859830 - H 82 -13 -2.86747 | overlap 859827 GACTCATCACAAGCA GGTGCATACGTATTCA CGC TGCATACGTATGCAAC AACAAAAGCCTAGCT TERM 1187 859896 - 859872 - H 71 -3.4 -4.91084 | overlap 859887 TATGCAACAACAAAA GCCTAGCTGA GAAAA CCTGCTTGGC CAGCGGGTAAAAAGT TERM 1188 860490 - 860502 + G 70 -4.8 -4.56597 | CAGCCATACCTCGGA CCAG CATGC CTGG TTTTTGGAGAGCCGC TERM 1189 861557 - 861542 - g 70 -6.8 -4.08767 | opp_overlap 861542 861547, overlap 861547 TGCAGTGGCGTAAAA CGCAAG CTGC CCTGCG CTTTGGTGGCATTGA glu13A 860170 - 861792 + | oligo-1,6-glucosidase, putative, glu13A TERM 1190 861827 - 861802 - f 100 -17.7 -4.4009 | opp_overlap 861804 861807 GTCTAGTGTAGAAAA CACAAGAGGCC GCCA GGCCTCTTGTG TTCCAATCGTGTTTC TERM 1191 861804 - 861825 + F 88 -14.5 -3.07787 | opp_overlap 861802, overlap 861807 CTAGTGTAGAAAACA CAAGAGGCC GCCA GGCCTCTTG TGTTCCAATCGTGTT TERM 1192 861807 - 861822 + F 83 -10.4 -3.67878 | opp_overlap 861802, overlap 861804 GTGTAGAAAACACAA GAGGCC GCCA GGCCTC TTGTGTTCCAATCGT TERM 1193 862154 - 862126 - f 100 -8.9 -5.24129 | GCTGTCTATAAAAAA TTGCACTAAGGCA CGA TGCTTTTGTGCAA AAGGTTAACAATAAA TERM 1194 863682 - 863696 + G 71 -2.7 -4.84359 | overlap 863674 GAACTATGGCGCATA CCTGG TTGCT CCTGG TTTTTATCAGGCTGA TERM 1195 863923 - 863933 + G 70 -4.6 -4.4767 | opp_overlap 863923 ACCATCGATGAGAAA GTGG CTA CCGC TTTTGTGATGGCTAA TERM 1196 864928 - 864912 - g 74 -5.9 -4.54821 | opp_overlap 864914, overlap 864914 ATTGCAAGCACAAAA CATCTTC GAC GAAGATA CTGTTAATGCTGAAA CJA_0733 862198 - 865020 + | TonB-dependent receptor TERM 1197 865076 - 865043 - f 88 -8.1 -4.77036 | opp_overlap 865047, overlap 865047 TCGCATTAGGAAAAA GGAAGCCCTGCTAGT CTTT ACTAGCGGGGCTTTT TTTCAGGTAGGTAAA TERM 1198 865072 - 865047 - f 95 -13.3 -3.85504 | opp_overlap 865047, overlap 865043 ATTAGGAAAAAGGAA GCCCTGCTAGT CTTT ACTAGCGGGGC TTTTTTTCAGGTAGG TERM 1199 865047 - 865072 + F 100 -15.5 -5.44119 | opp_overlap 865047 865043 ATTAGGAAAAAGGAA GCCCTGCTAGT CTTT ACTAGCGGGGC TTTTTTTCAGGTAGG CJA_0734 865096 - 865344 + | tryptophan halogenase TERM 1200 867083 - 867069 - g 74 -2.1 -5.1502 | ATAAACAAAAATAAA CAAGA AAAAA CCTTG GACTTAAAGCGCTTT amy13E 865368 - 867215 + | alpha-amylase, putative, amy13E TERM 1201 868584 - 868574 - g 85 -6.8 -4.77157 | overlap 868576 CGAATTGATGAAAAA CGCA TAG TGCG CAACGAGTGGCACGA TERM 1202 869004 - 869014 + G 72 -6.8 -4.17958 | GGAAAACACTGAAGC CTGG GTT CCAG TTTATTCGCGATGTT adg97B 867278 - 869353 + | alpha-glucosidase, putative, adg97B TERM 1203 869368 - 869387 + F 100 -11.4 -5.89659 | opp_overlap 869363 869368 ATTGCCAATACCCAA GCCGTTGC CTGT GCGACGGC TTTTTATTTTTTTAT TERM 1204 870673 - 870690 + G 76 -3.5 -5.00616 | gap 1, overlap 870676 GGGACTGGCAGATAT TG-AGCAT CAC ATGCTGCA TTTTTTGGAGAACCA TERM 1205 871061 - 871087 + G 79 -2.3 -5.18371 | gap 1 CGGTTTAACCGCGAT CAGGC-ACCG GGTTATAA CGGTCGCTTG TTTTCTTTTGTGCGC amy13D 869444 - 871354 + | alpha amylase, putative, amy13D TERM 1206 871552 - 871573 + G 100 -10.1 -6.17669 | opp_overlap 871551 871552, overlap 871553 GTCGCTGTTGATAAC TTGGCGCAG CTTG CTGCGCCAC TTTTTTTATTTTATT TERM 1207 871553 - 871572 + G 100 -13.6 -4.25111 | opp_overlap 871552 871551, overlap 871552 TCGCTGTTGATAACT TGGCGCAG CTTG CTGCGCCA CTTTTTTTATTTTAT CJA_0738 871525 - 871620 + | hypothetical protein CJA_0739 871692 - 872168 + | Adenylate cyclase CJA_0740 872240 - 872500 + | predicted membrane protein CJA_0741 873284 - 872535 - | Sec-independent protein translocase TatC CJA_0742 873766 - 873281 - | TatB CJA_0743 874067 - 873780 - | twin arginine-targeting protein translocase, TatA/E family CJA_0744 874428 - 874090 - | phosphoribosyl-ATP pyrophosphohydrolase hisIE 874811 - 874431 - | bifunctional protein phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase TERM 1208 874662 - 874641 - G 72 -10.1 -3.28712 | opp_overlap 874637 874634 CCCTTTGTGCCACAA CTGGTTGCG TGAG CGCGACCAG TAAATAGCTTGTTGT CJA_0746 875654 - 874836 - | oxidoreductase, aldo/keto reductase family CJA_0747 876946 - 875654 - | oxidoreductase, FAD-binding TERM 1209 877308 - 877335 + G 70 -10.5 -2.82635 | ACAGGATGCCTATCT CGCCGCCGCTA CCCACC TGGCGGCCGCG TGTGCTGATGCCGAT CJA_0748 877081 - 877950 + | dTDP-4-rhamnose reductase-related protein TERM 1210 878006 - 877982 - T 100 -7.8 -5.55769 | gap 1, opp_overlap 877982, overlap 877967 GGGCACAATAAAAAA GGCCGCACTCC AGGG GGAG-GTGGCC TTTTTTATGGGGGCG TERM 1211 877982 - 878006 + T 100 -10 -5.24129 | gap 1, opp_overlap 877982 877967 GGGCACAATAAAAAA GGCCGCACTCC AGGG GGAG-GTGGCC TTTTTTATGGGGGCG fabB 879237 - 878026 - | beta-ketoacyl-ACP synthase I TERM 1212 879306 - 879341 + r 76 -9 -3.6608 | opp_overlap 879334, overlap 879334 TTGTCGGCGGGACAG GGCGGGCATTATGCCA TAGA TCGCAAAATGTCTGCC TTTGGCTGAGATGGT fabA 879880 - 879356 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA TERM 1213 879926 - 879942 + r 73 -11.5 -2.58249 | overlap 879925 CGCAATCCGGCAGGC GGCGCGC AAG GTGCGCC ATTCTAACCGCTGTG ispB 880952 - 879990 - | octaprenyl-diphosphate synthase TERM 1214 880425 - 880449 + g 71 -2.8 -4.87665 | opp_overlap 880411 ACCGCCCACTTCGCA GGCGGCAG AAAAAAGGA TTGCCGTC TTTTTATCAATGACC mtaA 881906 - 881148 - | HetI TERM 1215 881342 - 881369 + g 73 -9.2 -3.57462 | gap 1, overlap 881346 881349 AACTGATGTTATCCA GCCCTGAGGCA ATGCCGG TGCC-CAGGGC TTTCAGCATGGCCTC TERM 1216 881493 - 881503 + g 71 -3.2 -4.82819 | CGCCAATTCGAGGGC GTTG AGG CGAC TTTTATTCTGCTCTA TERM 1217 881743 - 881733 - G 74 -8.2 -3.86897 | CCGACCGCGGACAAA GCGC TGG GCGC GTGCCAACTCTGCGG TERM 1218 882061 - 882079 + G 70 -5.2 -4.43911 | opp_overlap 882061 TTAGCATGCAAATCA CTGCCGAC AAA GTTGTCAG TTTTCATTACCGTTT CJA_0753 882051 - 882548 + | peptidyl-prolyl cis-trans isomerase, FkbP family TERM 1219 882819 - 882840 + G 70 -6.5 -4.15703 | opp_overlap 882819, overlap 882820 882822 CACAGGCTCAAACTA TCAGTCGGC ATAA GCTGACTGC TTCTTATTTGTACAA TERM 1220 883528 - 883508 - g 100 -11.1 -5.20328 | CTGGAAAAAAATAAA CAGGAGCGC ACC GCGCTGCTG CAGGAAATGGATGAG TERM 1221 884245 - 884229 - g 77 -10.1 -3.58343 | overlap 884243 TTGATGATGGTGAAA GCCTGCC CAA GGCAGAC CCGGAAAAGCTGCTG TERM 1222 884961 - 884937 - g 100 -12.9 -3.78775 | opp_overlap 884901, overlap 884942 TGCCCCATCAGGAAA CACAACTGCTC CTG GCGCAGTTGTG TGCGAAAAACTAGGG CJA_0754 882698 - 884974 + | two-component hybrid sensor and regulator TERM 1223 886840 - 886823 - g 70 -5.5 -4.3586 | gap 1, overlap 886824 886825 CTACTCAGACTAAAA CGGCACGC AAT GCGCG-CG ATCAGGATGGCGAAG TERM 1224 886949 - 886977 + G 93 -2.3 -5.62288 | ATAAACAGACTGGAT TTGCTATCGCGGA TGC TCCTGGACGGCAA TTTTTATTTTCTTCC TERM 1225 886990 - 887000 + G 86 -6.8 -5.0133 | CAATTTTTATTTTCT TCCC GTT GGGA TTTTTTGCCGCGATG CJA_0755 884959 - 887271 + | TonB-dependent receptor TERM 1226 887305 - 887328 + F 82 -11.8 -3.39787 | overlap 887303 ACATATAAAGTGGAT GCTCTCTTTG TTGT CGAAGAGAGC TGTTGTGTCGTTTGA CJA_0756 887439 - 888281 + | putative citrate synthase I TERM 1227 888443 - 888458 + G 70 -6.2 -4.28651 | TGCTTGATGAGCTGA TAGGAA AGGT TTCCTA TTTTCAGGTTTTGAT CJA_0758 888295 - 889155 + | hypothetical protein CJA_0757 891755 - 889152 - | putative signal transduction protein CJA_0759 893625 - 891853 - | putative acetolactate synthase large subunit TERM 1228 892960 - 892944 - G 85 -13.7 -2.72799 | opp_overlap 892943 892937, overlap 892941 892939 TGCCGACATAGACCA CCAGGCG GCG CGCCTGG GTCAGTTGATAGCCG TERM 1229 893438 - 893399 - G 100 -17.2 -3.14132 | opp_overlap 893413, overlap 893413 GTTTCGCGGTAGTAA CCATCGGCCATGAATGCG GCGC CGCATTCATGGCGGGCGG TGATCAGCCTGGGGC CJA_0760 894135 - 896885 + | hypothetical protein TERM 1230 896927 - 896943 + F 100 -13.7 -5.44119 | TTCTCGTCCTTGTTA GGGAGGC ATT GCCTCCC TTTTTTTGAGATGGC CJA_0761 897040 - 898224 + | transcriptional regulator, AraC family CJA_0762 899519 - 898266 - | Molybdopterin biosynthesis enzyme TERM 1231 898628 - 898586 - G 82 -11.3 -3.53444 | gap 1, opp_overlap 898586 898616 TCACCGCGGTGGAAA CAGGATTGC-CCGGCAGGCC GAAA AACCAGCCGCCGCAATCCTG TTGTTGATAGCGGTG TERM 1232 898586 - 898628 + g 79 -9.9 -3.72324 | gap 1, opp_overlap 898586, overlap 898616 TCACCGCGGTGGAAA CAGGATTGC-CCGGCAGG CCGAAAAA CCAGCCGCCGCAATCCTG TTGTTGATAGCGGTG TERM 1233 899794 - 899766 - R 100 -14.7 -5.14563 | opp_overlap 899771, overlap 899771 GCGGTCATTAAAAAA CAAAACCCGCG AACAGGG CGCGGGTTTTG GTGGTGCATCCTGGG TERM 1234 899789 - 899771 - R 100 -8.8 -5.45813 | opp_overlap 899771, overlap 899766 CATTAAAAAACAAAA CCCGCG AACAGGG CGCGGG TTTTGGTGGTGCATC TERM 1235 899771 - 899789 + r 83 -8.8 -4.3129 | opp_overlap 899771 899766 CATTAAAAAACAAAA CCCGCG AACAGGG CGCGGG TTTTGGTGGTGCATC rpoD 901714 - 899813 - | transcription initiation factor sigma 70 TERM 1236 900930 - 900963 + g 82 -3 -5.28683 | overlap 900933 TTTTCAGCCTGCTTG CTGCCGTAGCCGTG TTTTGC CAGGGCTTTGGTGG TTTTTTCGTATTGCT TERM 1237 901440 - 901414 - G 77 -12.2 -2.73364 | opp_overlap 901414 901415 TCTCTACCGCAACCA GTGCAGCAGCGG CTT CCGCCGCCGCAA TTTCGTCAGCGGCAG TERM 1238 901415 - 901439 + g 73 -11.3 -2.83403 | opp_overlap 901414, overlap 901414 CTCTACCGCAACCAG TGCAGCAGCGG CTT CCGCCGCCGCA ATTTCGTCAGCGGCA dnaG 903864 - 901780 - | DNA primase TERM 1239 901983 - 901972 - G 70 -7.2 -4.08064 | AATTGCCCCGGAAAA GCCG GCTT CGGC GTCGTAATCAGCCTT TERM 1240 903240 - 903216 - G 83 -12.8 -3.36492 | CTCCGAAGCCGATAA CCCGTCCGCG CGTGT CGCGGATGGG AAACATGATGCGGTG CJA_0766 904426 - 903932 - | GatB/Yqey domain superfamily TERM 1241 904338 - 904303 - G 100 -17 -4.39318 | opp_overlap 904303 TAACCAAACGCAAAA CAGCAACGCGCTCC TTTTCCCG GGAGCGCATTGCTG TTTTCAAGGCATCAT TERM 1242 904303 - 904338 + g 100 -15.5 -4.08945 | opp_overlap 904303 TAACCAAACGCAAAA CAGCAACGCGCTCCT TTTCCC GGGAGCGCATTGCTG TTTTCAAGGCATCAT TERM 1243 904415 - 904402 - G 74 -8.1 -4.04206 | CGACTGTCATATAAA GCTGG TTTC CCAGC GGGGTGGACAAGTGT rpsU 904706 - 904491 - | ribosomal protein S21 TERM 1244 904608 - 904631 + g 77 -6.6 -4.56597 | GTAGCACTCGCGCGC GCGTACATCC GCCA GGATGCCCGC TTTTTCACAGGCGCG TERM 1245 905189 - 905211 + G 81 -12.6 -3.1355 | overlap 905186 TGGTGCCTTAATGGT GGGGGCCGCC TTT GGCCGCTCCC TTGCCTATGCCTGGG TERM 1246 905582 - 905566 - g 73 -3.5 -4.7373 | TCAGCGGATTAAAAA CGGCGAC CCT GACGGCG GTAAATGCCCACAAA gcp 904920 - 905948 + | O-sialoglycoprotein endopeptidase folB 905959 - 906333 + | dihydroneopterin aldolase TERM 1247 906616 - 906628 + G 70 -4.1 -4.64676 | TGGATATTGATATTC TCACT TAC GGTGA TTTTGTTGGCAGTGA folK-2 906330 - 906848 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 1248 906905 - 906886 - T 77 -10.8 -3.41051 | opp_overlap 906886 CGACGTTTATGATAA TGGTTGCA TCAC TGCAACCA TTTTTTATAGGCAAT TERM 1249 906886 - 906905 + T 100 -10.8 -5.24531 | opp_overlap 906886 CGACGTTTATGATAA TGGTTGCA TCAC TGCAACCA TTTTTTATAGGCAAT CJA_0771 907862 - 906894 - | putative magnesium and cobalt transport protein CorA CJA_0772 908625 - 907879 - | oxidoreductase, short chain dehydrogenase/reductase family TERM 1250 907909 - 907923 + g 75 -11.4 -2.85351 | opp_overlap 907891 907894 CCGTCCGCCATCCAC GGCCAG GAT CTGGCC TGTAATATAAGGAGC TERM 1251 908387 - 908366 - G 70 -6.5 -4.258 | TTATTCACCAACAAA TCCAGGCGC TGCC ACGCGTGGA TACTGGTGTGGGCCA cca 909967 - 908648 - | tRNA nucleotidyltransferase TERM 1252 909066 - 909076 + g 70 -6.8 -4.04474 | opp_overlap 909066 ATTTCATGGGCAATA TGGC GGG GCCA TTTCTCTGGCGGTGT TERM 1253 909466 - 909456 - G 77 -8.2 -4.07885 | overlap 909457 TAGCGGGCGGCAAAA CGCG CGA CGCG CAGTATCCGCACCGG TERM 1254 910177 - 910153 - H 100 -14.3 -4.50159 | opp_overlap 910153 TCGAATTCAAACAAA GGCCGCAGCAT AAA ACACTGCGGCC TTTTTCGTTGTTGGG TERM 1255 910153 - 910177 + H 100 -10 -4.99435 | opp_overlap 910153 TCGAATTCAAACAAA GGCCGCAG CATAAAACA CTGCGGCC TTTTTCGTTGTTGGG TERM 1256 910910 - 910921 + G 81 -5.8 -4.78848 | opp_overlap 910910 910909 CCATCTCGGTAAAAT CTGC CTGT GCAG TTTTATATTTGGCAC CJA_0774 910258 - 911280 + | Integral membrane protein DUF6 domain protein CJA_0775 911510 - 912175 + | hypothetical protein TERM 1257 912204 - 912235 + F 100 -13.9 -4.77216 | opp_overlap 912204 912209, overlap 912209 TTTGACGATATATAA TAAAACGCCCCAG CTTTGT CTGGGGTGTTTTA TTTTTGAGTGTTATT TERM 1258 912235 - 912204 - f 86 -11.7 -3.61902 | opp_overlap 912204 912209, overlap 912209 TTTGACGATATATAA TAAAACGCCCCAG CTTTGT CTGGGGTGTTTTA TTTTTGAGTGTTATT TERM 1259 912230 - 912209 - f 82 -7.2 -4.87592 | opp_overlap 912204 912209, overlap 912204 CGATATATAATAAAA CGCCCCAG CTTTGT CTGGGGTG TTTTATTTTTGAGTG TERM 1260 912209 - 912230 + F 100 -9.4 -5.2853 | opp_overlap 912209 912204, overlap 912204 CGATATATAATAAAA CGCCCCAG CTTTGT CTGGGGTG TTTTATTTTTGAGTG TERM 1261 913674 - 913695 + G 77 -7.3 -4.56969 | overlap 913689 AAGTGACAGGGCCTG GAGTTCCCA CCAG TGGAAACTC TTTCTTTATGAACTT TERM 1262 914263 - 914277 + G 80 -11.4 -3.31144 | TTCTGGATTATGTGT CCACCC ATC GGGTGG TTCTGCGAATCCGGC CJA_0776 912269 - 914359 + | hypothetical protein TERM 1263 914997 - 915012 + F 100 -10.4 -5.66229 | opp_overlap 914995 914997 ATAGTGACACTAAGA GCAGGC ATCA GCCTGC TTTTTTATTATTAAT TERM 1264 915012 - 914997 - f 74 -10.4 -3.20841 | opp_overlap 914997, overlap 914995 ATAGTGACACTAAGA GCAGGC ATCA GCCTGC TTTTTTATTATTAAT TERM 1265 915931 - 915954 + G 74 -8.2 -3.9093 | gap 1, opp_overlap 915937 915938 TACCGGCTGTCGCTC CTACAACCTGG GAA CC-GGTTGTGG TTATTCTGTACTGCA CJA_0777 915128 - 916174 + | UDP-glucose 4-epimerase TERM 1266 916226 - 916256 + F 76 -11.9 -2.5547 | gap 1, opp_overlap 916226, overlap 916225 916228 GTTGAAATACCCAAA CAGGCCGCTTGCGA TGAC TCGTG-GCGGCCTG ATTCCTATCGGGAAT TERM 1267 916719 - 916689 - g 70 -4.7 -4.49556 | gap 2, overlap 916685 GTGGCAGTAAACAAA CCGG-TGG-CTGCCA GTT CGGCACTCCAGCCGG CCGGCAATGCGGTGG TERM 1268 918449 - 918464 + G 70 -5.4 -4.33819 | gap 1 GTTGGATTATGCTCC CGGCGCT GCC AGC-CCG TTTATTGTGGATCGT cbp32A 916572 - 919772 + | carbohydrate binding protein, putative, cbp32A TERM 1269 919816 - 919841 + TF 100 -14.7 -5.76949 | opp_overlap 919816 AGGTACCTAAAAAAA CACCCGCCGGA AAAT TACGGCGGGTG TTTTTTTTAGGGGTA TERM 1270 919841 - 919816 - Tf 100 -14.7 -5.47821 | opp_overlap 919816 AGGTACCTAAAAAAA CACCCGCCGGA AAAT TACGGCGGGTG TTTTTTTTAGGGGTA CJA_0779 920551 - 919862 - | hypothetical protein TERM 1271 921667 - 921690 + Gr 85 -12.4 -3.35996 | opp_overlap 921668, overlap 921668 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 1272 921689 - 921668 - gR 100 -15.9 -5.71983 | opp_overlap 921667 921668 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 1273 921668 - 921689 + Gr 95 -15.9 -2.61383 | opp_overlap 921668, overlap 921667 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_0780 920545 - 921696 + | ISCja2, transposase phoQ 923715 - 922327 - | Sensory transduction histidine kinase TERM 1274 922841 - 922877 + g 71 -9.3 -3.53091 | overlap 922842 CTCATGCGTGCGACC TGCTCGGCGGCGATTTG TTG CAATTCCCCGGCGGGCG TTTCCGGGCCCAGCT TERM 1275 922842 - 922876 + g 70 -10.6 -2.71712 | overlap 922841 TCATGCGTGCGACCT GCTCGGCGGCGATTTG TTG CAATTCCCCGGCGGGC GTTTCCGGGCCCAGC TERM 1276 923515 - 923525 + g 72 -8.2 -3.76492 | CAACTCACTTTTGTT GCCG TTG CGGC TTTCGTGCAGTTCGG phoP 924401 - 923718 - | DNA-binding response regulator TERM 1277 923767 - 923752 - G 74 -10.4 -3.47349 | TCGTTAAAGCGATAA CCCAGC CCGC GCTGGG TGCTGATCAGGTTGA CJA_0783 924844 - 924425 - | hypothetical protein CJA_0784 925499 - 924915 - | hypothetical protein TERM 1278 925256 - 925227 - G 73 -11.4 -2.70932 | gap 1, opp_overlap 925226 925225 TGTGCCGCCGAAGGA GTCGCC-GCCGCG CCGCT CGCGGTAGGCGAC GGTTTCAACACGGCA TERM 1279 925366 - 925388 + g 79 -4.9 -4.94972 | gap 1, opp_overlap 925359 925358 TCATAAACCACGACG CGCTCGCGAT AGTG AT-GCGAGTG TTTTTGCTTGTGGTA TERM 1280 925610 - 925598 - H 72 -4.7 -4.71061 | ACTCATACTGAAAAA GCCGG GTG CAGGC CGCACAGTTTTGCGT TERM 1281 926269 - 926302 + G 71 -9.5 -3.53091 | opp_overlap 926295 CCAACCGAGCCATTG CCCATTGCCTGCAGG CCGG CCTAAAGGCGGTGGG TTTGCCGCGCGAGGT proA 925770 - 927041 + | gamma-glutamyl phosphate reductase nadD 927060 - 927695 + | nicotinate (nicotinamide) nucleotide adenylyltransferase CJA_0787 927723 - 928091 + | iojap domain protein CJA_0788 928179 - 928697 + | conserved hypothetical protein TIGR00246 mrdA-2 928733 - 930736 + | penicillin-binding protein 2 rodA 930733 - 931887 + | rod shape-determining protein RodA TERM 1282 931880 - 931864 - f 76 -2.1 -5.4251 | overlap 931865 GCTACAGAGAAAAAA CGGGTCA TGA CGCCCCA GTCGTAATCGTTGAT TERM 1283 932143 - 932133 - g 74 -3.2 -5.00616 | opp_overlap 932141 GCCCCGCCGAAAAAA CCAA GCC CTGG CGCGACTATCGCCCT TERM 1284 932141 - 932159 + G 78 -5.2 -4.82901 | opp_overlap 932133, overlap 932143 GAAAAAACCAAGCCC TGGCGCGA CTA TCGCCCTA TTTTTATCCAACCCC plt103A 931910 - 932908 + | peptidoglycan lytic transglycosylase, putative, plt103A TERM 1285 933072 - 933052 - g 91 -7.5 -5.05782 | AGCCAGCGCAAAAAA CACCGCCGA CCA CCGGCAATG AGGGGCGCTATAAAC CJA_0792 932946 - 933827 + | Six5 TERM 1286 934177 - 934165 - g 71 -3.3 -4.82154 | AATGCAGAGCAAAAA TTGCC ACC GGCCA GCCTCACCAAAATGA TERM 1287 934497 - 934476 - g 74 -7.9 -4.11692 | overlap 934477 CACCCATTTTGAAAA CTCGTCCGG ATGG CCGGCCGAA GGGCACCTCACTACT CJA_0793 933931 - 935148 + | D-alanyl-D-alanine carboxypeptidase family TERM 1288 935176 - 935192 + T 100 -15.1 -5.252 | opp_overlap 935176 GTAATCCATAAAAAA GGCCCGC AAA GCGGGCC TTTTTTATGAGGATA TERM 1289 935192 - 935176 - T 100 -15.1 -5.31456 | opp_overlap 935176 GTAATCCATAAAAAA GGCCCGC AAA GCGGGCC TTTTTTATGAGGATA CJA_0794 935804 - 935217 - | thioredoxin family protein CJA_0795 935895 - 936167 + | hypothetical protein TERM 1290 936553 - 936540 - g 70 -5.9 -4.18494 | opp_overlap 936540 936538 GAGTCCTACCCAAAA CCGGA TGCC CCCGG TGTTTATGTAGAAAA lipB 936168 - 936815 + | lipoate-protein ligase B lipA 936876 - 937910 + | lipoic acid synthetase CJA_0798 938052 - 938564 + | putative acetyltransferase, GNAT family TERM 1291 938585 - 938613 + F 100 -17.5 -5.24531 | opp_overlap 938585 GCTGACCTGTAAAAA GGCAGGCAACCTT CTC AAGGTCGCCTGCC TTTTTTATGGGGGAT TERM 1292 938613 - 938585 - f 100 -19.7 -4.59773 | opp_overlap 938585 GCTGACCTGTAAAAA GGCAGGCAACCTT CTC AAGGTCGCCTGCC TTTTTTATGGGGGAT TERM 1293 938691 - 938701 + F 88 -8.2 -4.76075 | GCCTTTGAACGTTTA GGGG CGA CCCC TTTTATTCATATCCT TERM 1294 940621 - 940611 - g 70 -4.6 -4.57073 | opp_overlap 940611 TACTGCGGGTAAAAA CGGC GCG GCCA TTAACTGGGAAAGCA TERM 1295 942056 - 942041 - g 72 -4.6 -4.71828 | opp_overlap 942041, overlap 942042 ATGGCAGCAATAAAA CCCGCC TATG GGCAGA CAAGGGGGGGTATTT gly43E 938950 - 942375 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43E TERM 1296 942385 - 942400 + F 79 -10.4 -3.52079 | opp_overlap 942384 CAATAACGTGAACAG GGGGAG TTCG CTCCCC TTATCTGACCTGTTG TERM 1297 943461 - 943472 + G 75 -4.4 -4.83615 | opp_overlap 943461 CGATGAGCTGGAAAT CCTT GCGG AAGG TTTTTATACCGGATA TERM 1298 944242 - 944226 - g 74 -10.1 -3.55447 | CTATTTATTAGACAA CGCAGAC GCT GTCCGCG CCGTCTACGGCTTGG CJA_0800 942508 - 945333 + | putative TonB-dependent receptor TERM 1299 945348 - 945375 + F 85 -12.8 -3.31248 | opp_overlap 945354, overlap 945354 GGGTTATTAGCGTTT AAAAAAGCCCCG CTCG CGGGGCTTTTTA TTGTCGGCGATATTG TERM 1300 945354 - 945369 + F 100 -11.8 -5.18726 | opp_overlap 945354, overlap 945348 TTAGCGTTTAAAAAA GCCCCG CTCG CGGGGC TTTTTATTGTCGGCG TERM 1301 945369 - 945354 - f 100 -11.8 -5.02074 | opp_overlap 945348 945354 TTAGCGTTTAAAAAA GCCCCG CTCG CGGGGC TTTTTATTGTCGGCG TERM 1302 945408 - 945420 + F 81 -4.7 -5.24003 | AATCAATCTTTTTCA GCCTG GAT CTGGC TTTTTGATTTTTATT TERM 1303 945476 - 945454 - f 73 -4 -4.82162 | overlap 945455 TATAATAATACAAAA TGGGCGACGA ATT TCATCCCCCC GAAATCTATCGCATC TERM 1304 945556 - 945579 + F 100 -14.6 -5.93252 | AACACCAGATTTTAT GCCGCTGCAG TTGC CTGTAGCGGC TTTTTTGTTTTTGCG CJA_0801 945654 - 947375 + | methyl-accepting chemotaxis protein CJA_0802 947394 - 947687 + | hypothetical protein TERM 1305 948033 - 948023 - f 71 -6.8 -4.07568 | opp_overlap 948022 CGTTTCCGGTGAAAA TCCC CCA GGGA AATTGCTATGCACAT TERM 1306 948452 - 948433 - g 74 -2.8 -4.91511 | ATGCCAGGATAAAAA CGGCAA TGGTTATC TCGCCG GCCTGCCCGAGGGGG TERM 1307 948510 - 948486 - g 76 -9.3 -3.75665 | gap 1, opp_overlap 948486 948482 GGATATGGCAGGAAA TCGCGCGCGG TGATAT CCGCGCG-GA TAACTTCTCCACCAA TERM 1308 949411 - 949401 - g 85 -8.2 -4.46233 | overlap 949397 TGAATTGGAAAGAAA CCGG TAT CCGG TTGCGCCAGGAAAAC TERM 1309 949448 - 949430 - g 72 -8.9 -3.71672 | CGCCAGGAAAACCAA TTTCCGG ATGTG CCGGAAA CGTCTATCGTGCTTG TERM 1310 950375 - 950365 - g 86 -6.8 -5.00884 | opp_overlap 950364 AGCGCTGGTAAAAAA TGCC CAA GGCA AATTAGTGGTGAAAT CJA_0803 948041 - 950449 + | hypothetical protein TERM 1311 950549 - 950516 - T 100 -10.3 -4.79955 | opp_overlap 950520, overlap 950518 950519 ATAGGCAGAAGAAAA CAGGCGGGCGTATAC CAGG GTATACGCCCGTTTA TTTTTAATGGTGGGA TERM 1312 950547 - 950518 - T 84 -10.7 -4.01115 | opp_overlap 950520, overlap 950516 950519 AGGCAGAAGAAAACA GGCGGGCGTATAC CAGG GTATACGCCCGTT TATTTTTAATGGTGG TERM 1313 950546 - 950519 - T 85 -14.2 -2.99584 | opp_overlap 950520, overlap 950518 950516 GGCAGAAGAAAACAG GCGGGCGTATAC CAGG GTATACGCCCGT TTATTTTTAATGGTG TERM 1314 950520 - 950545 + T 100 -17.7 -4.92756 | opp_overlap 950519 950518 950516 GCAGAAGAAAACAGG CGGGCGTATAC CAGG GTATACGCCCG TTTATTTTTAATGGT CJA_0804 950810 - 950553 - | hypothetical protein arb43A 951959 - 950916 - | arabinanase and alpha-L-arabinofuranosidase, arb43A abf43L 952169 - 953242 + | alpha-L-arabinfuranosidase, putative, abf43L CJA_0807 953239 - 954303 + | aldose 1-epimerase TERM 1315 954322 - 954351 + T 100 -11.5 -5.60993 | opp_overlap 954322 GTTTCAGATGAAAAA CACCCGGCACA GATGTAAA TGTGTCGGGTG TTTTTTTATGAGCGG TERM 1316 954351 - 954322 - T 93 -9.3 -4.8048 | opp_overlap 954322 GTTTCAGATGAAAAA CACCCGGCACA GATGTAAA TGTGTCGGGTG TTTTTTTATGAGCGG CJA_0808 954870 - 954415 - | Peptidase C39 family superfamily TERM 1317 956465 - 956494 + r 72 -4.9 -4.67607 | gap 1, opp_overlap 956443 956444, overlap 956456 956457 956470 GTAGCGGCGCACTTT GGCGCGTTTAGCCC GTA GGGCGATAC-TGCC TTTGTTTGTTAGCAC TERM 1318 956955 - 956986 + r 70 -10 -2.94365 | opp_overlap 956950, overlap 956954 GCGTAGCAGAGCGAG GGCTGTCCCCGCCC GAGG GGGCGACAACAGCC GTTTGTCAGGTGTCG CJA_0809 957289 - 957032 - | hypothetical protein TERM 1319 957316 - 957356 + r 80 -9.8 -3.90943 | gap 1, overlap 957318 AATCAGTCTGTTGTG GTTAGCTGCCTCTGGGTGT TAGC GCACTCAGGGGTAGC-GAC TTTGAATTTGATTTA TERM 1320 957318 - 957355 + r 74 -11.3 -2.93481 | overlap 957316 TCAGTCTGTTGTGGT TAGCTGCCTCTGGGTGT TAGC GCACTCAGGGGTAGCGA CTTTGAATTTGATTT TERM 1321 957426 - 957461 + r 100 -10.6 -5.64274 | opp_overlap 957418 957426 AGCAAAACAATGAAA CACCAAGAGGCTGT ATAAATCA ACAGTTTCTTGGTG TTTTTTTATGCGTGG TERM 1322 957461 - 957426 - R 72 -6.2 -4.21737 | opp_overlap 957426, overlap 957418 AGCAAAACAATGAAA CACCAAGAGGCTGT ATAAATCA ACAGTTTCTTGGTG TTTTTTTATGCGTGG TERM 1323 957548 - 957562 + r 72 -2.8 -5.02476 | overlap 957532 ACACCCGCTCCGGGC CTCTTC GCT GAATAG TTTTTTCCGGCATAT TERM 1324 957713 - 957701 - R 78 -5.5 -4.74103 | TCCTGAAGCGAAAAA GAAGC TGG GCTCC CACTTTGAACAGGCG TERM 1325 957992 - 958010 + r 73 -10.4 -3.01791 | opp_overlap 957989, overlap 957989 ACCTCTACAAATGCT TCATTGAG CTT CTCAATGA TCTTGCGGCGAAACT TERM 1326 958324 - 958338 + r 72 -8.5 -3.83262 | opp_overlap 958334, overlap 958329 958334 CCCAGCCGTGATAGC GGCGC CAAGA GCGCC TTGTTATGCGCTTTC CJA_0810 959172 - 958342 - | hypothetical protein TERM 1327 958584 - 958601 + g 93 -8.5 -4.85599 | AGCGACCTTGATTCA TGATGGA GAAT TCCATCA TTTTTCTGAGCTCCC CJA_0811 959448 - 959549 + | hypothetical protein CJA_0812 960332 - 960000 - | hypothetical protein CJA_0813 961113 - 961000 - | hypothetical protein CJA_0814 962788 - 961865 - | hypothetical protein TERM 1328 962256 - 962273 + g 71 -2.8 -4.79451 | opp_overlap 962256 CTTTTTATAAAGTCA GAAATT ATATCC AATTTC TTTTCTGTTTCAGGT CJA_0815 963716 - 962913 - | hypothetical protein TERM 1329 963651 - 963626 - G 70 -3.9 -4.72272 | opp_overlap 963644, overlap 963627 963628 CCTCTTCATGAAAAA GCCGATGAAGC TCAT GCTTCGTCGAG AAGTCGGTGATATTT TERM 1330 963874 - 963856 - H 72 -8.9 -3.56226 | overlap 963854 AATTATTTAGAAACA CTGAACC CTTTT GGTTCAG GCATGAAAGCCGGAA TERM 1331 963899 - 963883 - H 72 -8.7 -3.76224 | opp_overlap 963882 GGTTCAGGCATGAAA GCCGGAA AGT TTCCAGC CTAATCTGACGCCTT TERM 1332 964631 - 964642 + G 72 -5.8 -4.41616 | TGGCAAGGTGTATAT GAGC TATG GCTC TTTCTTTGGCGGCAT gly43C 964146 - 965510 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43C TERM 1333 965523 - 965553 + F 100 -17.7 -3.48395 | gap 1, opp_overlap 965525 TAGGTTGACCCATCA CAGCAGCG-CCTGC GAGA GCAGGGCGCTGCTG TTCTATAAAAACAAT TERM 1334 965551 - 965525 - f 87 -14.5 -2.80816 | gap 1, opp_overlap 965523 GGTTGACCCATCACA GCAGCG-CCTGC GAGA GCAGGGCGCTGC TGTTCTATAAAAACA TERM 1335 965575 - 965565 - f 73 -4 -4.82901 | overlap 965568 GCTGTTCTATAAAAA CAAT GTC ATTG CCAACGACAACTGAT TERM 1336 965584 - 965568 - f 72 -5.9 -4.52873 | overlap 965565 GTTCTATAAAAACAA TGTCATT GCC AACGACA ACTGATCTACGACAA TERM 1337 965717 - 965741 + G 74 -7.8 -4.03234 | gap 1 GCACCGCTCACCAGT CCCG-ACCGGC AGTT GCAGGTGCGGG TTTATCTCACCCCGG TERM 1338 966432 - 966444 + G 71 -9.1 -3.5393 | CGCCCTGGCGCCTGC TCGCC ATT GGCGA TTTGGCACAGGTGAT TERM 1339 967523 - 967533 + G 85 -8.2 -4.56093 | ACGATCACCCTCAAG CCGG CAG CCGG TTTTGTCATTCGATT agd97A 965615 - 967555 + | alpha-glucosidase, putative, adg97A TERM 1340 967691 - 967705 + G 79 -12.8 -3.05596 | opp_overlap 967684 967683 AAAAAAGTTCGGCGG CCGCCG ATG CGGCGG TTGCATCCGCCGATA TERM 1341 968718 - 968706 - g 76 -9.1 -3.85698 | CCCGCTGGTGACAAA GGTGC AGG GCACC CAGGTACAACTGGTC gly43D 967618 - 969540 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43D TERM 1342 969565 - 969586 + F 100 -8.7 -5.14965 | overlap 969566 TTTGTGTCCCCCAGT TGAGTGAGC TTCG GCTCACTCC TTTTTTAATAACGCT TERM 1343 969566 - 969585 + F 93 -12.2 -3.68256 | overlap 969565 TTGTGTCCCCCAGTT GAGTGAGC TTCG GCTCACTC CTTTTTTAATAACGC TERM 1344 969641 - 969661 + F 75 -9.7 -3.63627 | CACGACAGAAGTATT CATCGGGTA CCT TGCCCGGTG TTTGAGGTGTAGCAA TERM 1345 969758 - 969771 + G 74 -8.1 -4.02742 | GCTGTCTTTTTTTCG GCCCT GCGC AGGGC TTTGGTGTTGTTGTG TERM 1346 971142 - 971125 - g 76 -7.7 -4.18018 | TGGTGTTAGTGAAAA CACTGCC GTGC AGCAGTG GAGTTGGTTAAGCAA abf43M 969737 - 971611 + | alpha-L-arabinfuranosidase, putative, abf43M TERM 1347 971629 - 971669 + F 81 -12.8 -3.20431 | gap 2, opp_overlap 971636, overlap 971630 971636 AAACGCTTTTTATGT G-TTCAAAGCCACCGGG-GC TGT GTGTCCGGTGGCTTTGAATC TGTCTGTTTAGGTGT TERM 1348 971630 - 971667 + F 100 -16.5 -3.15659 | gap 1, opp_overlap 971636, overlap 971629 971636 AACGCTTTTTATGTG TTCAAAGCCACCGGG-GC TGT GTGTCCGGTGGCTTTGAA TCTGTCTGTTTAGGT TERM 1349 971661 - 971636 - f 72 -9 -3.54424 | opp_overlap 971630 971629 971636 TTTTATGTGTTCAAA GCCACCGG GGCTGTGTGT CCGGTGGC TTTGAATCTGTCTGT TERM 1350 971636 - 971661 + F 79 -9.7 -3.75937 | gap 1, opp_overlap 971636, overlap 971630 971629 TTTTATGTGTTCAAA GCCACCGGG-GC TGT GTGTCCGGTGGC TTTGAATCTGTCTGT CJA_0820 971650 - 972060 + | hypothetical protein CJA_0821 972078 - 972461 + | hypothetical protein TERM 1351 972687 - 972700 + T 72 -6.7 -4.2828 | opp_overlap 972687, overlap 972680 TGAGACATCTCTAAA CTGGA GTTT TCCAG TTTTGCTCGGTACGC CJA_0822 973510 - 972668 - | transposase TERM 1352 973042 - 973030 - G 70 -10.5 -2.71364 | CCAGCGCTCGAACCA CCCGC TCA GCGGG CAAGGAGGTATCCAC TERM 1353 973480 - 973491 + g 93 -5.8 -5.20781 | opp_overlap 973479 973480 CGTGCTCAACCAAAG CCTG TGCG CAGG TTTTCTTTTCTGCTG CJA_0823 973776 - 973507 - | transposase CJA_0824 974930 - 974289 - | hypothetical protein CJA_0825 975181 - 974930 - | hypothetical protein TERM 1354 975362 - 975336 - R 75 -2.8 -5.24129 | opp_overlap 975336 975361 GCCGTTCATAAAAAA GCCACAGGCAAC ATG GTTGATCGGGGC TTTTTCAATCTTAGA CJA_0826 975887 - 975579 - | ParB-like nuclease domain TERM 1355 976070 - 976058 - R 72 -2.7 -5.08824 | GGTTTATCCAAAAAA TCACA AAT TGTAA AAATATAAAGCAGTA CJA_0827 977100 - 976207 - | ParB-like nuclease domain TERM 1356 976541 - 976557 + g 74 -7.9 -4.12456 | overlap 976556 GTGCCGCCTACCGCT GCCGTGG TTG CCACTGC TTTTGAAGCTGATAT CJA_0828 980414 - 977856 - | putative lipoprotein CJA_0829 982236 - 980428 - | hypothetical protein TERM 1357 981012 - 981023 + g 77 -5.8 -4.66318 | GGCGGCCTTTTACAC TGGC GGTG GCCA TTTTATTCAGGTCGT TERM 1358 981569 - 981584 + g 71 -2.6 -5.01732 | CAGGACTCAACGGCA TTATTG AGCG CAATGA TTTTTTCCGGGAATT CJA_0830 982768 - 982295 - | fibronectin type III domain protein TERM 1359 982322 - 982336 + g 73 -9.2 -3.63805 | GACGTACACCGTGGC GGTGGC CTG GCCGCC TTTGCCGTCTGCAAT TERM 1360 982475 - 982453 - G 74 -7.7 -4.05788 | opp_overlap 982470 982474 GGCTGGTAAAGGAAA CGATGGTGA GTGGA TCGCCATCG GCATCGCTGTCGTTG TERM 1361 982907 - 982920 + H 70 -5.3 -4.46432 | opp_overlap 982917 TATCAATATGATTTT TCTGT ATAA ACAGA TTTTCCTGATTTTTT CJA_0831 983162 - 985078 + | Cellulose or protein binding domain TERM 1362 985107 - 985126 + F 79 -8.6 -4.28548 | opp_overlap 985107 985110 AATGGGCCGTCAAAA CAACTTGC TATG GCAGGTTG TTTTGATGGGTAGAT TERM 1363 985155 - 985167 + F 76 -2 -5.37345 | ATAAGTGAAAAATTT TACA GGGAA TGTA TTTTTTATGGTTAGA TERM 1364 985350 - 985340 - g 70 -4 -4.7254 | AGTTTGTATGAAAAA TCAA CCA TTGA GATTTGTGTGTTACA CJA_0832 985332 - 986765 + | Cip2 TERM 1365 986779 - 986798 + T 100 -15 -4.07885 | opp_overlap 986779 GAATGGATAGCAAAA CGGCCTGC AATA GCAGGCCG TTTTGGGAAGGCATG TERM 1366 986798 - 986779 - T 100 -15 -4.36931 | opp_overlap 986779 GAATGGATAGCAAAA CGGCCTGC AATA GCAGGCCG TTTTGGGAAGGCATG CJA_0833 987535 - 986825 - | transcriptional regulator, GntR family TERM 1367 986879 - 986915 + g 85 -7.2 -4.74801 | opp_overlap 986879 986881 986884, overlap 986881 TGCTTCATCGATCAA CAGCAGCATCGAATGC TTGGC GCGTTCGGCGTTGCGG TTTTTGATGGCGTTG TERM 1368 987035 - 987024 - G 81 -5.8 -4.86731 | GCGGTGGAAATAAAA TCGC GCAG GCGA ATGTAAAAGCGGTTG CJA_0834 990539 - 987717 - | Diguanylate cyclase/phosphodiesterase domain 2 (EAL) TERM 1369 988236 - 988289 + g 72 -11.8 -2.52156 | gap 1, opp_overlap 988252, overlap 988252 988260 988262 ACGGCCCTGCTGGAG TTGCAGCGCGCAGAGATTGACGCTG ACCGG CAGCGCTAATC-CTTCGCGTTGCCA GTGTTCGATTTGGCT TERM 1370 989695 - 989683 - G 78 -10.5 -3.53012 | CGTTTGCCGGTGAAA GCGGC TGT GCCGC AGGAGCCGGCGCGCG ndh 992188 - 990848 - | NADH dehydrogenase CJA_0836 993745 - 992252 - | hypothetical protein TERM 1371 992586 - 992596 + g 74 -2.4 -5.07567 | opp_overlap 992564 TTGATGACATCGTAG CCGC TGA GCGC TTTTTTGCCCTGTAG TERM 1372 992679 - 992721 + g 78 -11.1 -3.56594 | overlap 992680 ATTTCGTGCTGTGCG GCGTCGCCCTGGCCCAGTC CTTTC GCCTGGGCTTGGGCGAGGA TTTGCAGGGCTTTGG TERM 1373 992680 - 992720 + g 90 -14.6 -2.73635 | overlap 992679 TTTCGTGCTGTGCGG CGTCGCCCTGGCCCAGTC CTTTC GCCTGGGCTTGGGCGAGG ATTTGCAGGGCTTTG CJA_0837 996009 - 993772 - | hypothetical protein CJA_0838 997060 - 996071 - | hypothetical protein TERM 1374 996574 - 996584 + g 72 -8.2 -3.78934 | overlap 996573 TGTTGCGGATATTGC CCGC TTC GCGG TTGTTGTAGGAAAAC CJA_0839 997822 - 997160 - | oxidoreductase, short chain dehydrogenase/reductase family oruR 999108 - 997993 - | transcriptional regulator, AraC family TERM 1375 998978 - 998964 - G 71 -2.1 -4.88736 | gap 1, opp_overlap 998966, overlap 998965 998966 CATCATCGATAAAAA TGC-CG GTAC CGCGCA GCAACCGGTATTCGG CJA_0841 1000141 - 999122 - | GGDEF domain protein TERM 1376 999348 - 999318 - G 81 -8.3 -4.35524 | gap 1 GTTTTAAACGCAAAA TGGGCGACG-GCTG CTTG CAGCTCATGGCCCA GGGCCCGGGCGCCGA TERM 1377 999618 - 999606 - G 72 -7.7 -3.90744 | TGCTGCCGGAAATAA TCAGC GCG GCTGA GCAGGGTCGTGTTAT TERM 1378 1000557 - 1000544 - g 100 -8.1 -5.25803 | opp_overlap 1000543 AATCTGTACAAAAAA GACGG CAAC CCGTC CGTATTCCTTTTATG TERM 1379 1001365 - 1001345 - g 72 -7.5 -3.93004 | overlap 1001346 1001357 ATAACACTGCACAAA CCAGCCCCA AAT TGGCGCTGA CCACCAGCAAACGCT cirA 1000498 - 1003302 + | TonB-dependent receptor TERM 1380 1004280 - 1004269 - g 83 -5.8 -5.02074 | overlap 1004271 CCAGGGTGGAAAAAA CAGC GGCT GCTG CCCATGGCCCAACGA CJA_0843 1003302 - 1005278 + | phytase domain protein TERM 1381 1005333 - 1005365 + F 91 -7 -5.5112 | gap 1, overlap 1005335 CAAGGCAGTAAGTTT GACGCGAGCCT-GTC TCCG GATTGGGCTCGCGTA TTTTTTATTGATCCC TERM 1382 1005335 - 1005363 + F 90 -9.6 -4.39002 | gap 1, overlap 1005333 AGGCAGTAAGTTTGA CGCGAGCCT-GTC TCCG GATTGGGCTCGCG TATTTTTTATTGATC TERM 1383 1005524 - 1005537 + G 74 -2.3 -5.03145 | opp_overlap 1005512 AAGGGCAGCCTTGGA CTGGC GCTG GGCAG TTTTTTAGGCAGTTC TERM 1384 1005979 - 1006022 + G 72 -4.5 -4.66163 | gap 1, opp_overlap 1005990, overlap 1006004 GGCCCATGGTGTCAG TGTGATTGAAATCCGCCGCG ATGCC CGCGGCGAATGGCAG-CGCA TTTTTCCATCGCGCT TERM 1385 1006012 - 1005990 - g 93 -13.4 -3.65351 | opp_overlap 1005979 1006004 TCAGTGTGATTGAAA TCCGCCGCGA TGC CCGCGGCGAA TGGCAGCGCATTTTT TERM 1386 1006183 - 1006173 - g 77 -8.2 -4.11216 | opp_overlap 1006172, overlap 1006174 GCTCCATGGGCAAAA CCCC CTG GGGG ACTTATCTGGTGTGC TERM 1387 1007329 - 1007360 + G 72 -8.7 -3.83844 | CCGCCCGCGTTCAAC CACCGTCGTTGTG ACCAAG CGCGATGGCGGTG TTATTGGTTCATAAG CJA_0844 1005398 - 1007374 + | Tat (twin-arginine translocation) pathway signal sequence domain protein TERM 1388 1007408 - 1007382 - T 100 -25.2 -4.93365 | GTTCATAAGCAAAAA CCGCCGGCCGTC ATT GACGGCCGGCGG CGAGGTGGAATGGAT CJA_0845 1007716 - 1007423 - | putative lipoprotein idnK 1008395 - 1007805 - | gluconokinase TERM 1389 1008480 - 1008505 + H 70 -4.7 -4.4009 | overlap 1008469 TAGCGCAATCATTTT GCCTGTGTTAT GGTA AGAAAACAGGC TTTTATGGCCTCCAG TERM 1390 1009147 - 1009169 + G 72 -7.6 -3.85817 | opp_overlap 1009139 1009161 CCAAATACCTGTTAA GCCAGGGC TATAACC GCCCCGGC TTTATCGGCGCGCGT TERM 1391 1009334 - 1009353 + G 82 -3.4 -5.24129 | overlap 1009336 CTTGATGAGTGCCAG TGGCGGCC ATCT GGACGCTG TTTTTTGTGCGAACG TERM 1392 1009336 - 1009351 + G 70 -6 -4.25873 | overlap 1009334 TGATGAGTGCCAGTG GCGGCC ATCT GGACGC TGTTTTTTGTGCGAA CJA_0847 1008600 - 1009637 + | transcriptional regulatory protein CJA_0848 1009665 - 1011314 + | cation symporter TERM 1393 1011393 - 1011409 + F 100 -15.1 -4.41353 | overlap 1011404 GATCCCGATGAGTTG GCGCCGC ACT GCGGCGC TTTTGCTGTGTGTAA TERM 1394 1011524 - 1011537 + G 87 -4.5 -5.24129 | gap 1 AGTCCCACCGCTATG CCGCGC GCT GC-CGG TTTTTTGTGGAACCA TERM 1395 1011684 - 1011699 + G 71 -2.4 -4.90778 | AGCAGCCCTACTATG CGCATC ATCC GGGGCG TTTTATTTACATCAA TERM 1396 1013660 - 1013686 + G 85 -7.3 -4.76041 | gap 2, opp_overlap 1013660 TGGAATACTGCCAAA GCG-GTG-CGCGA ATT TCGCGGCGCACGC TTTTTGGTAAATATA cgs94A 1011455 - 1013827 + | cyclic beta-1, 2- glucan synthetase, putative, cgs94A TERM 1397 1013872 - 1013854 - T 100 -14.6 -5.56264 | opp_overlap 1013854, overlap 1013869 GGTAAATATAAAAAA GGCGTGCT TTA AGCACGCC TTTTTTATGGCGCTT TERM 1398 1013854 - 1013872 + T 100 -14.6 -5.25803 | opp_overlap 1013854 1013869 GGTAAATATAAAAAA GGCGTGCT TTA AGCACGCC TTTTTTATGGCGCTT CJA_0850 1014240 - 1013899 - | hypothetical protein TERM 1399 1014315 - 1014335 + r 84 -14.1 -2.90194 | opp_overlap 1014298 ACCGGGCATGCGGAA CCTTTGTCG TTG CGACAAAGG TCTCGTTCACAGAAT TERM 1400 1014465 - 1014476 + r 83 -4.4 -5.41143 | CTGCTTAGTTAGCTT CAGT TTTC ACTG TTTTTTTCGCCGGTG CJA_0851 1014948 - 1014454 - | hypothetical protein TERM 1401 1015214 - 1015202 - R 82 -7.7 -4.72272 | opp_overlap 1015202 TTTGGTCATTAAAAA TGGCT GGG AGCCA TGTTCAACGTCGTGC TERM 1402 1015268 - 1015281 + r 93 -9.5 -4.59773 | opp_overlap 1015268 CCGCCCATAAAAAAA CCGGC AATT GCCGG TTTTTAGGAATCACG TERM 1403 1015281 - 1015268 - R 100 -9.5 -5.60993 | opp_overlap 1015268 CCGCCCATAAAAAAA CCGGC AATT GCCGG TTTTTAGGAATCACG rpsT 1015575 - 1015309 - | ribosomal protein S20 CJA_0853 1015660 - 1015568 - | hypothetical protein TERM 1404 1016075 - 1016056 - g 78 -10.7 -3.53563 | ACACCGCCGGTTAAA TCCCCGG GTGCGG CCGGGGA CGGCCAGTTAACCCA TERM 1405 1017116 - 1017105 - g 74 -5.8 -4.46212 | opp_overlap 1017113 1017115, overlap 1017106 GCTGGTAGCAGAAAA GCTG ACGG CAGC GCAGCAGTGCTTTGC TERM 1406 1017449 - 1017481 + G 74 -2.5 -5.0538 | overlap 1017451 1017457 TGCAGGCCGATAATT GCCTGGCGCAGGACG ACC TGTCATGTGCCGAAC TTTTTTCCGCTAAGG TERM 1407 1017591 - 1017610 + G 70 -10.6 -2.71712 | opp_overlap 1017587, overlap 1017590 GCAACAGGAGACGCG CGCGCAGC AGGT GCAGCGCG GTTTGGGGGAGGCCA TERM 1408 1017913 - 1017899 - g 75 -5.6 -4.64861 | TGGCGCTAAAACAAA GCGCCC AGG AGACGC AGCGCAAGCTCAAGG CJA_0854 1015849 - 1017951 + | serine/threonine kinase TERM 1409 1018141 - 1018125 - g 72 -4.3 -4.59853 | overlap 1018126 CCAATCCTGTAAAAA CCGCGAG CGG CTCAAGG CGGTAGCGCGCGTTG TERM 1410 1018506 - 1018490 - g 72 -4.3 -4.67641 | ATGCCAAAACCAAAA CCGGTGG CCG CTACCAG AATGAGTTTTCCTTT CJA_0855 1017991 - 1018671 + | hypothetical protein TERM 1411 1018714 - 1018767 + T 100 -15.5 -3.38072 | opp_overlap 1018707 1018733, overlap 1018733 ATAAACAGGCACTGG CATAGCGCTGGTATAAAAAGGCACC TTCG GGTGCCTTTTTACATTATCGCGATG TTGCTGTTGCCTGGA TERM 1412 1018733 - 1018748 + T 100 -10.4 -4.78149 | opp_overlap 1018733, overlap 1018714 GCGCTGGTATAAAAA GGCACC TTCG GGTGCC TTTTTACATTATCGC TERM 1413 1018748 - 1018733 - T 100 -10.4 -4.82901 | opp_overlap 1018733 1018714 GCGCTGGTATAAAAA GGCACC TTCG GGTGCC TTTTTACATTATCGC CJA_0856 1019461 - 1018757 - | nucleotidyltransferase family protein TERM 1414 1019173 - 1019163 - G 85 -8.2 -4.4891 | TTGATCAGGAGAAAA GGCG ATT CGCC CAGCAGGGGTAATGC CJA_0857 1020522 - 1019458 - | Domain of unknown function DUF227 TERM 1415 1022385 - 1022371 - g 72 -6.4 -4.38712 | opp_overlap 1022371, overlap 1022384 TTGAGCGCGATAAAA CCCTGT TCA ACAAGG GCTTTACCCAAACAC TERM 1416 1023082 - 1023109 + G 70 -6.2 -4.19953 | ATTGTTGCTATCGTG TCCGCCTGCTGG CACG TCGGTGGGTGGA TTTTGACCTTACGTC CJA_0858 1020699 - 1023278 + | putative organic solvent tolerance protein TERM 1417 1024447 - 1024433 - g 70 -7.1 -4.07568 | opp_overlap 1024432 GCCGTCCCTTCAAAA GCCAG TTTGG CTGGC ATATCCTGCAAGTCC surA 1023292 - 1024605 + | peptidyl-prolyl cis-trans isomerase SurA TERM 1418 1024624 - 1024665 + F 100 -18.3 -5.13722 | gap 1, opp_overlap 1024636 ACTTTAGGTCCCAGA CGGCTAAGACAA-TCCGCTA GAA TGGCGGACTTGTTTTAGCCG TTTTCTTTTGGTGCC pdxA 1024693 - 1025697 + | 4-hydroxythreonine-4-phosphate dehydrogenase ksgA 1025698 - 1026561 + | dimethyladenosine transferase CJA_0862 1026558 - 1026932 + | hypothetical protein TERM 1419 1027743 - 1027719 - g 100 -18.7 -3.53444 | opp_overlap 1027707 CTATGTGTCTGGAAA CAGGCGCATTG GTG CAATGCGCCTG TGAAGCATGAGGCAA CJA_0863 1026941 - 1027753 + | bis(5'-nucleosyl)-tetraphosphatase, symmetrical CJA_0864 1028655 - 1027759 - | PEP-CTERM putative exosortase interaction domain protein TERM 1420 1028782 - 1028792 + H 82 -6.8 -4.87665 | TGCGCCATTTTGTGA TGCC ATC GGCA TTTTTATGAATACGA TERM 1421 1029204 - 1029231 + H 82 -2.8 -5.52023 | gap 1, overlap 1029206 CATCACCTGATTCCT TTTGG-TTAAAGC CCT GCTTTAATCCGCA TTTTTTGTTGCTGCT CJA_0865 1029341 - 1030486 + | cytochrome c oxidase, subunit II TERM 1422 1031432 - 1031448 + G 86 -3.7 -5.4251 | TTACCACCGGCATGC CAGTTTT TGC AGAGCTG TTTTTTATGTATGCG CJA_0866 1030486 - 1032084 + | cytochrome c oxidase, subunit I coxG 1032104 - 1032631 + | cytochrome oxidase assembly factor TERM 1423 1032898 - 1032926 + G 81 -4.6 -5.04249 | opp_overlap 1032866 1032899 1032903 1032906, overlap 1032899 1032903 ACAGCGCGCAAATGG ACAGATCATTCC GCCAG GGAATGGTTTGG TTTATTTTTTCGGAG TERM 1424 1032903 - 1032921 + G 70 -5.3 -4.3778 | opp_overlap 1032899 1032903 1032906, overlap 1032899 1032898 GCGCAAATGGACAGA TCATTCC GCCAG GGAATGG TTTGGTTTATTTTTT TERM 1425 1033118 - 1033102 - g 74 -7.9 -4.03234 | opp_overlap 1033111 CGGGGGGGACAGAAA CCCAGGC GAT GCCTTGG GCAGGCATTCCGTTA CJA_0868 1032654 - 1033535 + | Cytochrome c oxidase subunit III CJA_0869 1033797 - 1033543 - | hypothetical protein CJA_0870 1033778 - 1034539 + | hypothetical protein TERM 1426 1034559 - 1034544 - fH 82 -5.4 -5.14563 | opp_overlap 1034544 CGCCTGATTAAAAAA TCCAGC AACA ACTGGA TATTGCGGTGAGAGA TERM 1427 1034872 - 1034853 - g 83 -6.4 -4.99035 | GTATCCACAGAAAAA TGCTCTCA TCAA TGTGAGCA GGCTCTTGTGACCTT CJA_0871 1034625 - 1035194 + | hypothetical protein CJA_0872 1035197 - 1036264 + | uncharacterized protein required for cytochrome oxidase assembly TERM 1428 1036467 - 1036483 + GF 70 -5.7 -4.34947 | GGCATAGGTTTGGTA GCGGCAG GCG CGGCTGC TTTTAATCATGTATT cyoE 1036254 - 1037204 + | protoheme IX farnesyltransferase TERM 1429 1037456 - 1037441 - gf 86 -11.8 -3.48924 | overlap 1037406 CCATGTTGCACAGAA CCCGCC AGCA GGCGGG CAGCGTGACCATGGA TERM 1430 1037611 - 1037635 + GF 78 -11.6 -3.10056 | opp_overlap 1037617, overlap 1037613 1037617 GTGTTAAGTGATGGA CAGGAATACT CGTTA AGTATTCCTG TGTTGCGTGAATGGT CJA_0874 1037167 - 1037670 + | hypothetical protein CJA_0875 1037673 - 1038341 + | SCO1/SenC superfamily TERM 1431 1038650 - 1038634 - g 82 -8 -4.4572 | AAGAGTGGAAAGAAA TTCGGG ATACA CCCGAA ACGCTGACCCACTTG CJA_0876 1038579 - 1039178 + | hypothetical protein CJA_0877 1039272 - 1039424 + | hypothetical protein TERM 1432 1039531 - 1039541 + G 72 -8.2 -3.72576 | AAAAACCACCCTTTG GCCG AAG CGGC TTTCCTGGAAAAAAG CJA_0878 1039528 - 1040091 + | hypothetical protein TERM 1433 1040126 - 1040111 - f 74 -6 -4.61231 | opp_overlap 1040111 1040118, overlap 1040112 GTACATTGGTAAAAA GGCCGC GTAT GCGGCA CTGCTGTCCCATAGT TERM 1434 1040125 - 1040112 - f 73 -9.5 -3.36256 | opp_overlap 1040111 1040118, overlap 1040111 TACATTGGTAAAAAG GCCGC GTAT GCGGC ACTGCTGTCCCATAG TERM 1435 1041347 - 1041370 + G 83 -12.4 -3.35996 | opp_overlap 1041348, overlap 1041348 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 1436 1041348 - 1041369 + G 95 -15.9 -2.61383 | opp_overlap 1041348, overlap 1041347 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 1437 1041369 - 1041348 - g 100 -15.9 -5.71983 | opp_overlap 1041348 1041347 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_0879 1040225 - 1041376 + | ISCja2, transposase hemL 1042710 - 1041430 - | glutamate-1-semialdehyde-2,1-aminomutase TERM 1438 1041668 - 1041644 - G 100 -3.5 -5.63517 | opp_overlap 1041649, overlap 1041649 TCGGTAAAGAAAAAA CCGAACATGCT GCC AACATGGTTGG TCGTGAATGGAATGC TERM 1439 1041754 - 1041779 + g 75 -5.5 -4.72272 | gap 1 TAAATGGGGGTATAT CTCTGGAGCTTG CAG TAA-CTCCAGGG TTTTTAATCCGGCGG TERM 1440 1041898 - 1041887 - G 70 -7.2 -4.11216 | CGCCGACCGCCAAAA GCCC CCAC GGGC ATACCGCCACCAATT thiE 1043384 - 1042740 - | thiamine-phosphate pyrophosphorylase CJA_0882 1043775 - 1043353 - | Uncharacterised protein family (UPF0093) superfamily CJA_0883 1044686 - 1043778 - | hypothetical protein TERM 1441 1043848 - 1043876 + g 72 -8 -3.97307 | opp_overlap 1043848 GGTACATCGACTATA GCGGCTGGCTCT GTTGG GGGGCTTGCCGC TTGTTGTTGCCTACC CJA_0884 1046496 - 1044754 - | voltage-gated chloride channel argC 1046661 - 1047707 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 1442 1047767 - 1047788 + F 95 -13 -4.30576 | opp_overlap 1047767 AACGACCAGAAAGAA CCCCTGCC TTAACT GGCAGGGG TTTTGATAATCACAA TERM 1443 1047788 - 1047767 - f 95 -13 -4.12857 | opp_overlap 1047767 AACGACCAGAAAGAA CCCCTGCC TTAACT GGCAGGGG TTTTGATAATCACAA TERM 1444 1048387 - 1048375 - g 71 -3.3 -4.84527 | overlap 1048368 1048376 GGCACAGAGCAAAAA TTGCC CTT GGCAC AGCTGGTGGTAACAC CJA_0886 1047832 - 1048590 + | hypothetical protein CJA_0887 1048613 - 1049026 + | putative cell morphology protein CJA_0888 1049095 - 1049448 + | HesB/YadR/YfhF family protein CJA_0889 1050624 - 1049485 - | Uncharacterised protein family (UPF0075) superfamily trg3 1052066 - 1050633 - | peptidase, M23/M37 family TERM 1445 1052008 - 1051983 - G 70 -6.8 -4.13244 | overlap 1051999 GCACAACAACAATAA CGCGAGAGCA ATCATA TGCCCTCGGG GAAACGCATTAATCA TERM 1446 1052256 - 1052268 + H 100 -10.5 -5.1675 | opp_overlap 1052254 ATATAGTCACAATCC CCGGC TTG GCCGG TTTTTTGGTGGGTGC tyrS 1052287 - 1053594 + | tyrosyl-tRNA synthetase TERM 1447 1053573 - 1053589 + F 75 -6.6 -4.43037 | opp_overlap 1053572 AGGTAAAAAGAAGTG CCACTT GTTTG AAGTGG TTTGATTTTTGTTCG TERM 1448 1053677 - 1053659 - g 87 -4.4 -5.1861 | CTGATTATCAAAAAA CCCTTGCC AAT GCCCAGGG GCGTGCCTATAGTGC TERM 1449 1053776 - 1053764 - g 79 -3.5 -5.055 | opp_overlap 1053764 CGAAGCTGTAAAAAA TTAAT GAA ATTAA TCATTTACAGCGCAA CJA_0893 1053581 - 1053796 + | hypothetical protein TERM 1450 1056828 - 1056816 - f 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGATCCT TERM 1451 1057620 - 1057604 - f 79 -9.4 -4.08546 | overlap 1057617 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGGAAGACCAA TERM 1452 1059525 - 1059561 + F 100 -18.1 -4.1399 | opp_overlap 1059530, overlap 1059530 TCAAGCGCCTAATAC TGAAACCCCCTGTGGTG ATA CGCCTCAGGGGGTTTTA TTTATATATAAGTAC TERM 1453 1059530 - 1059556 + F 100 -15.8 -5.07523 | opp_overlap 1059530, overlap 1059525 CGCCTAATACTGAAA CCCCCTGTGGTG ATA CGCCTCAGGGGG TTTTATTTATATATA TERM 1454 1059556 - 1059530 - f 100 -13.6 -3.76373 | opp_overlap 1059530 1059525 CGCCTAATACTGAAA CCCCCTGTGGTG ATA CGCCTCAGGGGG TTTTATTTATATATA TERM 1455 1062527 - 1062515 - f 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGATCCT TERM 1456 1063319 - 1063303 - f 79 -9.4 -4.08546 | overlap 1063316 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGGAAGACCAA TERM 1457 1065229 - 1065253 + F 100 -13.6 -5.46706 | gap 1, opp_overlap 1065229 CGCCTAATACTGAAA CCCCCTGTGGC AGCC GCC-CAGGGGG TTTTTATTTTGGGCT TERM 1458 1065253 - 1065229 - f 100 -13.6 -3.76373 | gap 1, opp_overlap 1065229 CGCCTAATACTGAAA CCCCCTGTGGC AGCC GCC-CAGGGGG TTTTTATTTTGGGCT CJA_0905 1065398 - 1066183 + | hypothetical protein rimI 1066194 - 1066676 + | ribosomal-protein-alanine acetyltransferase CJA_0907 1067242 - 1066679 - | DNA-binding response regulator CJA_0908 1068584 - 1067235 - | sensor histidine kinase TERM 1459 1069891 - 1069904 + G 70 -5.9 -4.26903 | TATGGGGTGATCATG GCCGT TAAT GCGGC TTTTAATGGCATGGG TERM 1460 1069913 - 1069939 + G 81 -12.2 -3.23393 | overlap 1069911 ATGCGGCTTTTAATG GCATGGGGCGCC CCT GGCCCCCAATGC TGTTATCCGCTGGAC CJA_0909 1068700 - 1070148 + | Na+-driven multidrug efflux pump TERM 1461 1070665 - 1070643 - g 70 -4 -4.71426 | opp_overlap 1070644 1070656, overlap 1070644 CTTTTATCAATAAAA TGGATCGCGA GAG CCGGGATCCT GTTGAGTTGCTGGAT TERM 1462 1070950 - 1070971 + G 86 -7.3 -5.00616 | gap 1, overlap 1070952 ATTGGATGAGTATCT TGCCGGACGT ATG ACG-CCGGTA TTTTTTGGAACGGCA TERM 1463 1070952 - 1070969 + G 74 -7.7 -4.13561 | gap 1, overlap 1070950 TGGATGAGTATCTTG CCGGACGT ATG ACG-CCGG TATTTTTTGGAACGG prfC 1070222 - 1071799 + | peptide chain release factor 3 TERM 1464 1071937 - 1071975 + G 93 -11.9 -4.25104 | gap 1, opp_overlap 1071950 TGTACTCGTGGGGCA GGCGA-GTGAGAATGATT GGGC AATCTTTCTCGCGTCGCC TTTTCGTCACCACCC CJA_0911 1071803 - 1072144 + | hypothetical protein CJA_0912 1072233 - 1072793 + | hypothetical protein TERM 1465 1072799 - 1072849 + T 79 -12.1 -3.2827 | gap 1, opp_overlap 1072817, overlap 1072799 1072817 TTTGCGCTGACACGG TGCCGGCCCATAAAAAAAGCCACC ATTA GGTGGCTTTTTTTATGGGG-GAAA TTACTGCTTGGGTAG TERM 1466 1072799 - 1072848 + T 90 -15.4 -2.5664 | gap 2, opp_overlap 1072817, overlap 1072799 1072817 TTTGCGCTGACACGG TGCCGGCCCATAAAAAAAGCCACC ATTA GGTGGCTTTTTTTATGGG--GGAA ATTACTGCTTGGGTA TERM 1467 1072832 - 1072817 - T 100 -10.4 -5.60993 | opp_overlap 1072799 1072799 1072817 CGGCCCATAAAAAAA GCCACC ATTA GGTGGC TTTTTTTATGGGGGA TERM 1468 1072817 - 1072832 + T 100 -10.4 -5.60993 | opp_overlap 1072817, overlap 1072799 1072799 CGGCCCATAAAAAAA GCCACC ATTA GGTGGC TTTTTTTATGGGGGA CJA_0913 1074043 - 1072850 - | TonB family C-terminal domain protein CJA_0914 1074256 - 1074957 + | cyclic nucleotide-binding domain protein TERM 1469 1075111 - 1075094 - g 70 -9.9 -3.26545 | opp_overlap 1075090 1075107 GTTACAGACCACGAA TCTGGCT GGTC AGCCAGA GCGTTACTCTTGTCG CJA_0915 1075035 - 1075718 + | hypothetical protein TERM 1470 1075798 - 1075769 - T 100 -18.1 -3.05816 | opp_overlap 1075769 1075776, overlap 1075776 TGATGTGGCAGGCAA CAAAAAAGGCACC GTAA GGTGCCTTTTTTG TTTGTACACCTGCTC TERM 1471 1075769 - 1075798 + T 100 -18.1 -3.88291 | opp_overlap 1075769 1075776, overlap 1075776 TGATGTGGCAGGCAA CAAAAAAGGCACC GTAA GGTGCCTTTTTTG TTTGTACACCTGCTC TERM 1472 1075791 - 1075776 - T 100 -10.4 -5.4833 | opp_overlap 1075769 1075776, overlap 1075769 GCAGGCAACAAAAAA GGCACC GTAA GGTGCC TTTTTTGTTTGTACA TERM 1473 1075776 - 1075791 + T 100 -10.4 -5.72622 | opp_overlap 1075776 1075769, overlap 1075769 GCAGGCAACAAAAAA GGCACC GTAA GGTGCC TTTTTTGTTTGTACA CJA_0916 1076659 - 1075817 - | hypothetical protein CJA_0917 1076954 - 1076745 - | hypothetical protein TERM 1474 1076783 - 1076814 + g 70 -4.7 -4.50976 | CAATAAAAACGGCAA TTTTTTTGTTTTT TTTGTC AAAAACAGAGAAA TTTTGTCCTGTCAGG TERM 1475 1077052 - 1077064 + G 70 -5.5 -4.43477 | opp_overlap 1077052 1077053, overlap 1077035 1077053 TTGGTTTACCAGGAA TCAGC GTT GCTGG TTTTGCTTGGCTCGA CJA_0918 1076983 - 1077090 + | hypothetical protein TERM 1476 1078080 - 1078068 - g 72 -5.5 -4.55697 | AGCCGTAGAAAGAAA CACCA ATC CGGTG ATGAAGGTAGCGAAA CJA_0919 1078050 - 1078487 + | TonB system transport protein ExbD2 TERM 1477 1078496 - 1078534 + T 77 -11.9 -2.87211 | opp_overlap 1078508, overlap 1078508 AAAATAGCGCCTCCT TCCATAAAAAAACCGCC CCAGA GGCGGTTTTTTTATGCC TGTGTAAAGGCAGAT TERM 1478 1078522 - 1078508 - T 100 -9.2 -5.60993 | opp_overlap 1078496 1078508 CCTTCCATAAAAAAA CCGCCC CAG AGGCGG TTTTTTTATGCCTGT TERM 1479 1078508 - 1078522 + T 100 -8.5 -5.65177 | opp_overlap 1078508, overlap 1078496 CCTTCCATAAAAAAA CCGCC CCAGA GGCGG TTTTTTTATGCCTGT CJA_0920 1079073 - 1078549 - | YbaK / prolyl-tRNA synthetases associated domain protein TERM 1480 1079158 - 1079172 + r 72 -8.6 -3.80625 | ATCTCAAAAGTGTTA TGTACC TCA GGTACA TTTGGATTATAGGAA TERM 1481 1079283 - 1079298 + r 93 -10.4 -4.66609 | opp_overlap 1079283 CGACGCATAAAAAAA GCCACC CTTG GGTGGC TTTTTACATGACCTA TERM 1482 1079298 - 1079283 - R 100 -10.4 -5.64274 | opp_overlap 1079283 CGACGCATAAAAAAA GCCACC CTTG GGTGGC TTTTTACATGACCTA aspC 1080603 - 1079320 - | aspartate transaminase CJA_0922 1082603 - 1080669 - | Zn-dependent protease with chaperone function TERM 1483 1081475 - 1081489 + g 85 -10 -4.183 | TTTGTGCATCTACTG CAGCCA GCA TGGCTG TTTGTTGCGCATTGG TERM 1484 1081726 - 1081738 + g 100 -3.3 -5.86061 | overlap 1081727 AATTGCGACCCTCGA ATGGC GCC GCCAA TTTTTTTTAATGCAC TERM 1485 1081727 - 1081737 + g 70 -6.8 -4.10552 | overlap 1081726 ATTGCGACCCTCGAA TGGC GCC GCCA ATTTTTTTTAATGCA TERM 1486 1081890 - 1081878 - G 75 -6.9 -4.35604 | overlap 1081881 GTAACCGATAATAAA GAGGC CGA GCCCC AGCACCACAATACCG TERM 1487 1082221 - 1082239 + g 84 -7.5 -4.68593 | GAGGCGATCGCCATC TCCTCAA CCACA TTGAGGA TTTTTCGCTCGTCCG TERM 1488 1082577 - 1082550 - G 100 -13.5 -3.76482 | opp_overlap 1082559, overlap 1082543 CGATACCAGCAACAA CACCAAGCGCA GGGTGT TGCGCTTGGCG AGATCCTGTTGTTCA CJA_0923 1083232 - 1082639 - | hypothetical protein TERM 1489 1083062 - 1083100 + g 91 -12.4 -3.83154 | overlap 1083055 1083063 CTTGATATAGCCCTT GGCCGTTTCGACCAGATT GGG AATCAGGTCGTAGCGGCG TTTCAGTTGTACTTC TERM 1490 1083063 - 1083099 + g 95 -15.9 -2.89169 | overlap 1083055 1083062 TTGATATAGCCCTTG GCCGTTTCGACCAGATT GGG AATCAGGTCGTAGCGGC GTTTCAGTTGTACTT CJA_0924 1083968 - 1083354 - | 21 kDa hemolysin precursor gmhA 1084552 - 1083968 - | phosphoheptose isomerase CJA_0926 1085044 - 1084664 - | conserved hypothetical protein TIGR00252 CJA_0927 1086972 - 1085047 - | LppC putative lipoprotein TERM 1491 1085257 - 1085234 - G 72 -11.8 -2.54387 | gap 1 TAAAGGCGGAATGCA TCGGCTCCCAG GGC CTGG-AGCCGA TCATAAACAGCGGCT TERM 1492 1085505 - 1085522 + g 71 -10.5 -2.92667 | overlap 1085502 1085507 AAATCATATCCACAT CGCCGCG ACTG CGCGGTG TCGTTTCCAGCTTGA TERM 1493 1086100 - 1086055 - G 83 -9.8 -4.015 | gap 3, opp_overlap 1086091 GTAGGCAGCAAAGAA GCCATCGCGCACGGCCTGGCCTG CTT CAG-CCAGGC-G-GCCCGATTGC GGCAACAACAGGGCT TERM 1494 1087019 - 1087032 + H 72 -8.1 -3.67954 | TCTTTGCGTCTTTTG CACGC CAGG GCGTG TTTCGCATCTCTTTC CJA_0928 1087030 - 1087935 + | conserved hypothetical protein TIGR00096 TERM 1495 1087941 - 1087961 + TF 100 -13.3 -5.13741 | opp_overlap 1087941 CCGTGAATAAAAAAA CAGGGCACT TTA GGTGCCCTG TTTTTGTTGAGTTAC TERM 1496 1087961 - 1087941 - Tf 100 -12.6 -5.7946 | opp_overlap 1087941 CCGTGAATAAAAAAA CAGGGCAC TTTAG GTGCCCTG TTTTTGTTGAGTTAC CJA_0929 1090368 - 1087987 - | putative TonB-dependent receptor TERM 1497 1088085 - 1088048 - Gf 71 -10.5 -2.73453 | gap 1, overlap 1088047 TAGAAGGCATAGAAG CCAG-AGCTTGCGCCCTG GGT CAGGACGCTGGCTACCGG TAATCCATTGGCGTA TERM 1498 1088639 - 1088616 - Gf 70 -9.6 -3.05963 | ATTCGGAGCGGAACA GCGCAGCA TTGATTTC TGCTGCGC CCTCGGCCAGTACAA TERM 1499 1089710 - 1089724 + gF 80 -11.4 -3.29649 | TTCCATACCAGGGTG CCGCGT ACC ACGCGG TTGGTATCATGGGAT TERM 1500 1090173 - 1090154 - Gf 72 -5.8 -4.34402 | gap 1, opp_overlap 1090154 1090153 TGGGTCATATTAAAA CTGGGT-AT GTA ATCACCCAG CTTCTCGATATTGGT CJA_0930 1090357 - 1090452 + | hypothetical protein TERM 1501 1091004 - 1091043 + Tr 100 -20.2 -3.20382 | opp_overlap 1091011, overlap 1091011 CGACTCCTTTAATAA CGCAAAACCCGGATCAGG CTGA CCTGATCCGGGTTTTTTG TTGCTGGATATCGAG TERM 1502 1091011 - 1091036 + Tr 100 -19.1 -5.5112 | opp_overlap 1091011, overlap 1091004 TTTAATAACGCAAAA CCCGGATCAGG CTGA CCTGATCCGGG TTTTTTGTTGCTGGA TERM 1503 1091036 - 1091011 - TR 100 -19.1 -4.36127 | opp_overlap 1091011 1091004 TTTAATAACGCAAAA CCCGGATCAGG CTGA CCTGATCCGGG TTTTTTGTTGCTGGA CJA_0931 1091888 - 1091061 - | hypothetical protein CJA_0932 1092312 - 1091971 - | hypothetical protein CJA_0933 1092509 - 1092309 - | hypothetical protein TERM 1504 1092353 - 1092343 - GH 71 -2.4 -5.00895 | opp_overlap 1092343 TGGATGAGAGAAAAA CCGC GCG GTGG CTGTTTCAATATCGC CJA_0934 1092475 - 1093206 + | predicted transcriptional regulator CJA_0935 1093343 - 1093759 + | glyoxylase I family protein TERM 1505 1094531 - 1094546 + G 70 -5.4 -4.39828 | gap 1 AGGCTATCGCCTGAT TGC-CGC AGA GCGCGCA TTTTCTGACCCTGTT CJA_0936 1093800 - 1094726 + | hypothetical protein TERM 1506 1095754 - 1095744 - g 72 -5.4 -4.45168 | TTGCCAAAACAGAAA GCTT TTT AAGC GAGATAGAAAAGGAG CJA_0937 1094756 - 1096258 + | hypothetical protein CJA_0938 1096460 - 1097437 + | hypothetical protein TERM 1507 1097476 - 1097463 - Tf 100 -9.5 -5.0916 | GCCCCAACAGAAAAA GCCCC TTGC GGGGC AGCAGAGGAATTGGG CJA_0939 1098364 - 1097507 - | nitrate transporter system, ATPase component TERM 1508 1098011 - 1098025 + gF 85 -2.8 -5.33985 | ATTGTGTTCTATCCA GTCG CGCATTT CGAC TTTGTTTTTTTTGCC TERM 1509 1098137 - 1098121 - Gf 70 -5 -4.40561 | GGTTTTGAAAAACAA CGGCGC GCTCG GGGCCG GGAGAATTTACTTCT CJA_0940 1098363 - 1098491 + | hypothetical protein CJA_0941 1098795 - 1099946 + | putative TPR domain protein TERM 1510 1100539 - 1100518 - g 87 -4.3 -5.24129 | opp_overlap 1100532, overlap 1100519 1100520 TGGGGTGAGAAAAAA TGGCCGCCA CGGC TGGATGCCA AACGCGATAGCGGCA CJA_0942 1100197 - 1101015 + | Domain of Unknown Function (DUF1080) superfamily CJA_0943 1101067 - 1101582 + | putative glutathione peroxidase TERM 1511 1102117 - 1102097 - g 100 -13.3 -3.77607 | opp_overlap 1102096 1102092, overlap 1102087 AACAACCTGATCAAA CTCACCGCC GAT GACGGTGAG CTGCATTTGGCCCTG CJA_0944 1101614 - 1102660 + | hypothetical protein CJA_0945 1102712 - 1103515 + | transmembrane protein TERM 1512 1105068 - 1105052 - g 73 -3.7 -4.77165 | overlap 1105047 TGTGCGACAACAAAA GGATAAA ACC TTTAGCC ACGACAACATTTTCC CJA_0946 1103502 - 1105160 + | sulfatase TERM 1513 1105169 - 1105187 + T 79 -8.8 -4.15044 | opp_overlap 1105166 CCTGTAACGAAAGGG GCTAACCC CCT GGGTAAGC TTTATTAAAAACCCC TERM 1514 1105744 - 1105765 + T 72 -2.9 -5.00884 | overlap 1105746 1105749 GTAAAGCGGTGAAAA TGCGCCACC CTGC GGTGATGTA TTTTTTACGCGCGAT CJA_0947 1107506 - 1106013 - | hypothetical protein TERM 1515 1106651 - 1106627 - G 90 -11.3 -3.89346 | opp_overlap 1106626 1106627 CGGTGATCGCACAAA GCGCCCCTGGC TCT GTCAGCGGCGC GCTTGTCTGGGCATC TERM 1516 1106955 - 1106937 - G 72 -8.8 -3.85698 | opp_overlap 1106936 1106951 TTCCGGGGCGACAAA CGCCAAGC GCT GGTTGGCG GTCTTGCCATTGTCC TERM 1517 1107450 - 1107422 - G 73 -11.8 -2.80443 | gap 2, opp_overlap 1107415 GGATACGCCAGTAGA GCGCCTGGTCAGGG TAG CCCT--CCAGGCGC TGGTAACTGTTGTGC CJA_0948 1115991 - 1107559 - | RHS Repeat family TERM 1518 1107812 - 1107827 + g 77 -8.2 -4.07687 | GTAGCGCCTGACGCT GCGCCC TGGA GGGTGC TTTTGAGCAGCCCCT TERM 1519 1108247 - 1108299 + g 77 -12.7 -2.71011 | gap 3, overlap 1108296 GCGCTGGCACCCGCA GCGGCAGTTCCCTCGGCGCCAGCCGC GCCG GCGGCAG-CGCCG-GC-ATCTGCCGC TGCTTCAGCACCGAT TERM 1520 1110283 - 1110271 - G 77 -3.3 -5.14563 | opp_overlap 1110279, overlap 1110272 TTCGGCATCAAAAAA CGTCG TAG CGACC TGCTGCCCCAGCTTG TERM 1521 1110470 - 1110480 + g 70 -6.8 -4.07568 | GCCTTGCCGGGCAGG CTGG TCT CCAG TTTTACCGAGCGCGG TERM 1522 1110633 - 1110661 + g 72 -10.9 -3.07962 | opp_overlap 1110634 CCATTGCCGAGAGGA ACGCGGCCACATC CAC GAAGTGGCTGCGG TATTGCAGTGTGGGC TERM 1523 1110660 - 1110634 - G 81 -12.2 -3.2614 | opp_overlap 1110633 CATTGCCGAGAGGAA CGCGGCCACATC CAC GAAGTGGCTGCG GTATTGCAGTGTGGG TERM 1524 1110772 - 1110748 - G 72 -10.7 -3.06915 | opp_overlap 1110739 1110750, overlap 1110750 ATTGAGCGCATCGAA TACCAGCTCGC ACA GCAGGCTGGTA TTCCCGTGCAGTTGA TERM 1525 1111307 - 1111295 - G 74 -10.5 -3.21772 | overlap 1111293 AAGCTCTCCAGAATA CCGCC CCC GGCGG GGTGCAGTGTCAGCT TERM 1526 1113056 - 1113069 + g 82 -8.1 -4.56597 | overlap 1113038 1113046 CCCACGCCACCGTCG CTGGC TTCT GCCAG TTTTTCCCCGGCAAA TERM 1527 1113344 - 1113358 + g 80 -11.4 -3.28924 | overlap 1113355 GCCCAGTCGTCGCCG CTGGCC GAC GGCCAG TTGTCCGAGGCACTG TERM 1528 1114119 - 1114105 - G 74 -2.7 -5.00616 | GTTGCCGCCAAAAAA CTGGG GCACG CCCTG GGTGTTGGCGTAGGT TERM 1529 1114472 - 1114447 - G 86 -6.1 -5.03715 | gap 1, overlap 1114449 ATCATCGCCAAAAAA TACCCG-TGGGG TTG CCCCATCCGGCA CGGCACCGGGGCGTT TERM 1530 1115532 - 1115522 - G 79 -4.6 -5.00616 | overlap 1115523 1115524 CCGTTGGCCAAAAAA GCGC TGC GCAC CGCCGCCGGCACAGT CJA_0949 1116937 - 1116074 - | hypothetical protein CJA_0950 1117289 - 1117155 - | hypothetical protein CJA_0952 1117240 - 1117359 + | hypothetical protein lpxO 1118255 - 1117356 - | beta-hydroxylase TERM 1531 1118314 - 1118325 + r 77 -7.2 -4.55023 | CAAACTTTGGCTAGG GCGC CTAT GCGC TTTTGTCATCTTCCC CJA_0953 1119285 - 1118347 - | two-component transcriptional regulator, LuxR family TERM 1532 1118385 - 1118395 + g 75 -6.8 -4.37092 | overlap 1118373 TGGCAGCGGCGGCGG CCGA AGT TCGG TTTTCTACGCCAAGT CJA_0954 1122713 - 1119282 - | two-component hybrid sensor and regulator TERM 1533 1119537 - 1119548 + g 70 -3.6 -4.72272 | CGGTGTGGATGCGGC GCTG AGTA CGGC TTTTTCGTAGCGCCA TERM 1534 1119639 - 1119660 + g 77 -10.2 -3.65046 | GATATAGGCCTGGTG CAGCAAGG TATTTT CCTTGCTG TTGTTCCAATGGAGG TERM 1535 1120699 - 1120709 + g 72 -8.2 -3.81414 | CTCTTGGCGAGGTTG GCCG CTT CGGC TTGTTCCTTGGCAAT TERM 1536 1122045 - 1122027 - G 74 -5.9 -4.4959 | overlap 1122030 1122032 GGCAATCAATGAAAA CACCACC GCAGA GGCGGCG CCAAAAAATAAAATA CJA_0955 1123040 - 1122879 - | hypothetical protein TERM 1537 1123125 - 1123149 + H 75 -11.3 -3.08133 | GAGTGACCAGTGTGG CGAACGGCCAG CTT CAGGCCGATCG TTGAATGACTCAGTG TERM 1538 1123300 - 1123313 + G 77 -5.9 -4.7254 | TGCCTGCTTGGCCTT GCCGC CTCT GTGGC TTTTTCATCCGCGGT CJA_0956 1123276 - 1124472 + | amide-urea binding protein TERM 1539 1124518 - 1124473 - f 72 -8.1 -3.73534 | opp_overlap 1124480 1124483 1124504, overlap 1124485 GAAGGTTACCAATAA TCGCCCTGAACACTGCCAGCC GTGC GGCTGGCAGTGTGCTTTGCAG CCCGCTGTTGTGTTG TERM 1540 1124480 - 1124511 + F 100 -18.8 -3.53563 | opp_overlap 1124473 1124485, overlap 1124483 1124504 ACCAATAATCGCCCT GAACACTGCCAGCC GTGC GGCTGGCAGTGTGC TTTGCAGCCCGCTGT TERM 1541 1124483 - 1124508 + F 100 -19.1 -2.90496 | opp_overlap 1124473 1124485, overlap 1124480 1124504 AATAATCGCCCTGAA CACTGCCAGCC GTGC GGCTGGCAGTG TGCTTTGCAGCCCGC TERM 1542 1124506 - 1124485 - f 93 -15.9 -3.02461 | opp_overlap 1124483 1124480 1124504, overlap 1124473 TAATCGCCCTGAACA CTGCCAGCC GTGC GGCTGGCAG TGTGCTTTGCAGCCC TERM 1543 1125087 - 1125116 + G 70 -5.6 -4.3467 | overlap 1125088 TGTTTGTGATGTGCC TGGCGCTGGGGA TTTCCC TCACCATCGCCG TTTTAATGTACCGCT TERM 1544 1125183 - 1125169 - g 70 -7 -4.08767 | opp_overlap 1125169 1125180 CGCAGTGGTGCAAAA CCGGGC GAT GGCCGG TGCTGTCGGTATTAA CJA_0957 1124591 - 1125517 + | amino acid/sugar ABC transporter, permease protein fmdF 1125534 - 1126760 + | ABC transporter permease protein TERM 1545 1127147 - 1127170 + G 71 -11 -2.8552 | overlap 1127146 GCAAGGTGCGCGAAG TGGCCGGGAA AATT TTCCTGGCCG ATTTCCTCGATACCC CJA_0959 1126747 - 1127496 + | ABC transporter ATP-binding protein TERM 1546 1128176 - 1128192 + G 70 -10.9 -2.73459 | opp_overlap 1128175 1128179, overlap 1128175 1128173 CGTGAGACAGTTAAT GAAGCCA AGG TGGCTTC CTATTTATCGGTATA CJA_0960 1127519 - 1128208 + | ABC transporter ATP-binding protein TERM 1547 1128201 - 1128211 + T 74 -6.8 -4.20516 | TGGCTTCCTATTTAT CGGT ATA ACCG TTTGTTGCATAAACA TERM 1548 1128252 - 1128282 + T 100 -15.5 -5.40474 | gap 1 TAGGGCTGTTTTTGA CCGGTCAGCGCGTC TCTC GG-GCGCTGACCGG TTTTTTTACGCGGGT CJA_0961 1128621 - 1128301 - | hypothetical protein CJA_0962 1128749 - 1128841 + | hypothetical protein TERM 1549 1128922 - 1128912 - g 77 -3.2 -5.08169 | overlap 1128900 ATAGATTTGAAAAAA TCGC CTT ACGA AAATCCTATGATTCA fmdA 1128876 - 1130108 + | amidase TERM 1550 1130400 - 1130378 - g 74 -9.9 -3.48269 | GCCATGAAACAGGAA TTGCGCGCA GCCCA TACGCGCAA TGAAACGGCACAGCA TERM 1551 1130422 - 1130406 - g 81 -10.1 -3.91352 | opp_overlap 1130405 1130406 1130420 ATACGCGCAATGAAA CGGCACA GCA TGCGCCG GTATTGTCGACACCG CJA_0964 1130222 - 1130590 + | putative formamidase regulatory protein FmdB TERM 1552 1130644 - 1130591 - T 100 -22.8 -3.19642 | gap 2, opp_overlap 1130608, overlap 1130592 ATGATTAGTCATTAA GGTTGCCGCCAATGCAATAGGCCCCT GCCA AGGGGCCTATTGCATTGG-GGCA-CT TAACAATAAACGGTG TERM 1553 1130643 - 1130592 - T 100 -26.3 -2.51464 | gap 2, opp_overlap 1130608, overlap 1130591 TGATTAGTCATTAAG GTTGCCGCCAATGCAATAGGCCCCT GCCA AGGGGCCTATTGCATTGG-GGCA-C TTAACAATAAACGGT TERM 1554 1130608 - 1130629 + T 90 -14.5 -3.17194 | opp_overlap 1130592 1130591 TTGCCGCCAATGCAA TAGGCCCCT GCCA AGGGGCCTA TTGCATTGGGGCACT CJA_0965 1131357 - 1130680 - | putative transcriptional regulator TERM 1555 1132017 - 1132051 + G 88 -11.4 -3.73224 | overlap 1131994 1132018 GTCGCGGCGGGAACC TCGGCATCCTCGGT ATTGTTG ACCGGGGTTGCCGG TTTGGTGGCGGGTGC TERM 1556 1132018 - 1132050 + G 77 -12.7 -2.8372 | overlap 1131994 1132017 TCGCGGCGGGAACCT CGGCATCCTCGGT ATTGTTG ACCGGGGTTGCCG GTTTGGTGGCGGGTG CJA_0966 1131840 - 1132583 + | nodulin 21-like protein CJA_0967 1133301 - 1132606 - | conserved proteinconserved protein TERM 1557 1132749 - 1132766 + g 71 -9.1 -3.49475 | AGTTTTCAACCAGGG CGCTGGC AGAC GCCAGTG TTGTCTCCAGGTGGA TERM 1558 1132920 - 1132933 + g 70 -3.7 -4.63218 | GGTAGCGCTCCAGTA CCAGG GCAA CCGGG TTTTGTTCAGCACCG CJA_0968 1133944 - 1133480 - | LPXTG-motif cell wall anchor domain protein TERM 1559 1133753 - 1133733 - GH 74 -8.2 -3.85698 | CCGCGCTCCGAGAAA CCTGGCGC TGAGG GCTCCAGG GCCGAGAAACCCAGG CJA_0969 1133823 - 1135142 + | ATP-dependent RNA helicase RhlB TERM 1560 1135150 - 1135169 + FH 100 -15 -3.28001 | overlap 1135145 GTCATTAATCTGACT GACCCCGC CGCG GCGGGGTC TTGCGTTTCGGAATA TERM 1561 1135235 - 1135255 + G 77 -3.1 -5.03145 | overlap 1135236 TGCATCTGACGGCCT TCCTGATGG GGG CCACCGGGC TTTTTTCCAAAATTA TERM 1562 1135639 - 1135625 - g 74 -10 -3.46144 | opp_overlap 1135625, overlap 1135623 1135628 ATATCAGCAACAACA TGACCC AGG GGGTCA TCTGGGGCGTCATTT CJA_0970 1135189 - 1136049 + | hypothetical protein CJA_0971 1136076 - 1136876 + | Catalytic LigB subunit of aromatic ring-opening dioxygenase TERM 1563 1137556 - 1137538 - g 70 -3.8 -4.59207 | overlap 1137542 ACAAATACGACAAAA CCGACC TGATCAT GATCGG GGTATCGGGTGAAAG rrpX 1136943 - 1138211 + | response regulator protein CJA_0972 1138954 - 1138208 - | putative sulfate transporter TERM 1564 1138857 - 1138843 - G 83 -6.4 -4.93296 | TTAGCACGACAAAAA TCACCA GAT TGGCGA GTAGGGGAATCAAAA TERM 1565 1138890 - 1138878 - G 87 -4.7 -5.18643 | opp_overlap 1138878, overlap 1138873 GGAATCAAAATAAAA CGGCG AAA CCCCG GTTTACTGATCAGCC CJA_0974 1139604 - 1138966 - | peptidase, rhomboid family CJA_0975 1139867 - 1146178 + | von Willebrand factor type A domain protein TERM 1566 1146178 - 1146233 + F 100 -12.8 -5.17054 | gap 1, opp_overlap 1146183 1146197, overlap 1146183 1146185 GGATTTATCCCTGTA GCAAATTCCGT-TTGACCAACCCTGCT AGA AGCAGGGTTGGTCAATACCCCATTTTC TTTTTTGAATATTGT TERM 1567 1146228 - 1146183 - f 86 -11.3 -3.72893 | gap 1, opp_overlap 1146178 1146183 1146185, overlap 1146197 TATCCCTGTAGCAAA TTCCGT-TTGACCAACCCTGCT AGA AGCAGGGTTGGTCAATACCCCA TTTTCTTTTTTGAAT TERM 1568 1146183 - 1146228 + F 100 -11.3 -5.43553 | gap 1, opp_overlap 1146183 1146197, overlap 1146178 1146185 TATCCCTGTAGCAAA TTCCGT-TTGACCAACCCTGCT AGA AGCAGGGTTGGTCAATACCCCA TTTTCTTTTTTGAAT TERM 1569 1146185 - 1146226 + F 84 -13.9 -2.88588 | gap 1, opp_overlap 1146183 1146197, overlap 1146183 1146178 TCCCTGTAGCAAATT CCGT-TTGACCAACCCTGCT AGA AGCAGGGTTGGTCAATACCC CATTTTCTTTTTTGA TERM 1570 1146213 - 1146197 - f 81 -12.3 -3.14211 | opp_overlap 1146185 1146183 1146178, overlap 1146183 ATTCCGTTTGACCAA CCCTGCT AGA AGCAGGG TTGGTCAATACCCCA CJA_0976 1146245 - 1149406 + | hypothetical protein TERM 1571 1149589 - 1149616 + F 70 -2 -5.07486 | overlap 1149591 AGTGTTTGCATATCT TTTTGGGCGTGA ATTG TAATGCTCAAGA TTTTTGTTGCAGCTA CJA_0977 1149607 - 1149801 + | hypothetical protein TERM 1572 1149842 - 1149872 + F 84 -4.7 -5.42259 | TTCCTTTGTTTTTGG CTTGGTAGCTCTT ATTTG GGGGGCTACTGAG TTTTTTTGGGGATCA TERM 1573 1150119 - 1150141 + F 100 -9.2 -4.95618 | opp_overlap 1150110 1150119 GATAAATCTGAATTA CTACCTCAGA TTT TTTGGGGTAG TTTATTTTTACTATT CJA_0978 1150683 - 1151345 + | hypothetical protein TERM 1574 1152239 - 1152267 + F 100 -9.7 -4.86385 | opp_overlap 1152239 1152238 TATTACAGATTAAAC TCCTTCATTGGGT CTT ATCCAATGAAAGA TTTGTTTTTAAGAAT TERM 1575 1152311 - 1152282 - f 88 -12.5 -3.61517 | opp_overlap 1152287, overlap 1152287 ATTTGTTTTTAAGAA TCAAAGAAAATTA GATT TAATTTTCTTTGA AATTCAACCAAGTTA TERM 1576 1152733 - 1152754 + F 100 -12.3 -4.96501 | AATTTTTACTGCGTA TGGGCGTCT ATTG GGACGCCCA TTTATTTTTGTAGAG TERM 1577 1152930 - 1152947 + F 79 -2.7 -5.43866 | TGGTTGTTGCATCAT TGATTGC TGCC GTAGTCA TTTTTTTGCGGCTTG TERM 1578 1153384 - 1153398 + F 74 -5.8 -4.56729 | TGCAATATAGTTTAA CAATTA TTG TAATTG TTTTGGTCTTTTCCT CJA_0979 1153869 - 1154354 + | hypothetical protein TERM 1579 1154619 - 1154581 - f 79 -12 -3.20078 | opp_overlap 1154579 1154578, overlap 1154579 GACCTGACATCAAGA TGTGCTAATTTTGTAGCA TAG TGCTAAAAAATTAGCATA GGCATTTGCTGATAG CJA_0980 1154650 - 1155048 + | hypothetical protein CJA_0981 1155076 - 1156590 + | peptidase, M56 family CJA_0982 1156704 - 1157363 + | TonB2 CJA_0983 1157466 - 1158266 + | hypothetical protein hemN 1159701 - 1158310 - | oxygen-independent coproporphyrinogen III oxidase TERM 1580 1158980 - 1158966 - G 70 -4.2 -4.65895 | opp_overlap 1158972, overlap 1158967 GGGCGTAGTTAAAAA TCGACA GCC TGTCGG GTTGCAGGTCGATCA TERM 1581 1159459 - 1159470 + g 70 -5.8 -4.15044 | GGCGCGGTTTTTGTT GTGG GTAA CCAC TTTGTTGCAGCCGCA CJA_0985 1159791 - 1160489 + | SM-20 domain protein CJA_0986 1160587 - 1162224 + | Domain of unknown function (DUF404) family TERM 1582 1162522 - 1162504 - g 74 -7.4 -4.07568 | opp_overlap 1162496 CTTTGCCCGTGAAAA CTCGCG TATTACC CGCGAG ATCATGCCTATGGAA CJA_0987 1162226 - 1163191 + | Bacterial domain of unknown function (DUF403) superfamily TERM 1583 1163235 - 1163250 + F 100 -11.8 -5.26316 | TGTCTCTGAGCTTTA GCCCGC GTAT GCGGGC TTTTTTATGGCGTCC TERM 1584 1163313 - 1163325 + F 82 -5.5 -5.26316 | opp_overlap 1163313 GCACGACGTTGAAAA TGGCT CCC GGCCA TTTTTTATGGCGTGC TERM 1585 1163389 - 1163401 + F 79 -2.7 -5.30686 | overlap 1163394 GCGCGGCGTTAAAAA TTTCT CCC GGAAA TTTTTTATGGGTATT TERM 1586 1163668 - 1163652 - f 95 -7.9 -5.40072 | opp_overlap 1163665, overlap 1163653 1163656 GCTGCCTGAAAAAAA GCAGGGC CTT GCCCTGG CCTCAAGGAGGCTAC TERM 1587 1163667 - 1163653 - f 86 -11.4 -3.83561 | opp_overlap 1163665, overlap 1163652 1163656 CTGCCTGAAAAAAAG CAGGGC CTT GCCCTG GCCTCAAGGAGGCTA TERM 1588 1164348 - 1164333 - g 79 -4.6 -5.00884 | opp_overlap 1164332, overlap 1164334 AGGGCCGTGAAAAAA TGGCGA TTGA TCGCCG CATTATCGGTTACTT chi18B 1163789 - 1166461 + | endo-chitinase, putative, chi18B CJA_0989 1166563 - 1166471 - | hypothetical protein TERM 1589 1166517 - 1166534 + g 100 -12.7 -5.00884 | opp_overlap 1166517 GACACCATCCCAAAA GGCCAGC AATT GCTGGCC TTTTTTACAGGGCAT TERM 1590 1166534 - 1166517 - G 95 -12.7 -4.16279 | opp_overlap 1166517 GACACCATCCCAAAA GGCCAGC AATT GCTGGCC TTTTTTACAGGGCAT CJA_0990 1166651 - 1166553 - | hypothetical protein CJA_0991 1168144 - 1166684 - | cardiolipin synthase TERM 1591 1167839 - 1167812 - G 78 -11.2 -3.53012 | opp_overlap 1167812, overlap 1167813 GCCTGCGGTTTGAAA CTCCAGCCTGGC CAGT GCCAGGCTGGCC GGGTGGAAGTTATGC TERM 1592 1167838 - 1167813 - G 90 -14.7 -2.71712 | opp_overlap 1167812, overlap 1167812 CCTGCGGTTTGAAAC TCCAGCCTGGC CAGT GCCAGGCTGGC CGGGTGGAAGTTATG CJA_0992 1168945 - 1168187 - | hypothetical protein TERM 1593 1168455 - 1168429 - GH 81 -4.5 -5.15634 | gap 1 TATTGGAGGAAAAAA TTTCCGG-ATTG TGGA CAATACCGGCAA ACCCTGCTGAAAATG CJA_0993 1168935 - 1169417 + | cytosolic long-chain acyl-CoA thioester hydrolase family protein CJA_0994 1170430 - 1169543 - | Transglutaminase-like superfamily domain protein TERM 1594 1170298 - 1170315 + g 74 -2.7 -5.00884 | overlap 1170300 GCATAGTGGCGTTGG GCGAAAT GTTG ATTTCAC TTTTTTCCACCAGCT CJA_0995 1173030 - 1170427 - | Domain of unknown function (DUF404) family TERM 1595 1172409 - 1172372 - G 70 -5.6 -4.41348 | gap 1, opp_overlap 1172372 1172380 CTGTCGCGAAACAAA CTGGGAAA-CACCCGGT TCATC ACCGTGCGGTTTTCCAG GGCATAACCCGCACC chi19A 1173479 - 1174906 + | chitinase, putative, chi19A TERM 1596 1174905 - 1174956 + TF 95 -11.6 -3.84451 | opp_overlap 1174912 1174913 1174916, overlap 1174907 1174913 1174914 1174916 GCAATATCGGTTGTT AACATAATTCAGTGGCAGTGAACC CCGG GGTTCACTGCCACTGCTTCCTGTG TTTACCTTTGCAAAC TERM 1597 1174907 - 1174954 + TF 93 -14.2 -3.50832 | opp_overlap 1174912 1174913 1174916, overlap 1174905 1174913 1174914 1174916 AATATCGGTTGTTAA CATAATTCAGTGGCAGTGAACC CCGG GGTTCACTGCCACTGCTTCCTG TGTTTACCTTTGCAA TERM 1598 1174949 - 1174912 - Tf 100 -17.1 -3.65812 | opp_overlap 1174907 1174905 1174913 1174914 1174916, overlap 1174913 1174916 CGGTTGTTAACATAA TTCAGTGGCAGTGAACC CCGG GGTTCACTGCCACTGCT TCCTGTGTTTACCTT TERM 1599 1174913 - 1174948 + TF 100 -20.6 -3.42659 | opp_overlap 1174913 1174912 1174916, overlap 1174907 1174905 1174914 1174916 GGTTGTTAACATAAT TCAGTGGCAGTGAACC CCGG GGTTCACTGCCACTGC TTCCTGTGTTTACCT TERM 1600 1174948 - 1174913 - Tf 100 -20.6 -2.79273 | opp_overlap 1174907 1174905 1174913 1174914 1174916, overlap 1174912 1174916 GGTTGTTAACATAAT TCAGTGGCAGTGAACC CCGG GGTTCACTGCCACTGC TTCCTGTGTTTACCT TERM 1601 1174914 - 1174947 + TF 100 -24.1 -2.64872 | opp_overlap 1174913 1174912 1174916, overlap 1174913 1174907 1174905 1174916 GTTGTTAACATAATT CAGTGGCAGTGAACC CCGG GGTTCACTGCCACTG CTTCCTGTGTTTACC TERM 1602 1174945 - 1174916 - Tf 100 -20.9 -2.66255 | opp_overlap 1174914 1174913 1174907 1174905 1174916, overlap 1174913 1174912 TGTTAACATAATTCA GTGGCAGTGAACC CCGG GGTTCACTGCCAC TGCTTCCTGTGTTTA TERM 1603 1174916 - 1174945 + TF 100 -20.9 -2.85874 | opp_overlap 1174916 1174913 1174912, overlap 1174914 1174913 1174907 1174905 TGTTAACATAATTCA GTGGCAGTGAACC CCGG GGTTCACTGCCAC TGCTTCCTGTGTTTA TERM 1604 1175093 - 1175107 + TF 75 -10 -3.65581 | opp_overlap 1175091, overlap 1175076 1175075 GGCGTTTAATGGACG CTCCGT TAT ACGGAG TTATTGGCCGTTGCT CJA_0997 1175506 - 1175126 - | hypothetical protein TERM 1605 1176224 - 1176235 + Gr 70 -5.8 -4.26903 | GGGTTTTCGCAATCC CTGG CGCT CCAG TTTTGATCGCCTGAC TERM 1606 1176577 - 1176595 + Gr 80 -7.3 -4.56597 | AAGATCTGGTGCCTT CCGGCGG TTCGT CCCCCGG TTTTTCCGAAGACAA TERM 1607 1176739 - 1176759 + Gr 77 -11.1 -3.1544 | opp_overlap 1176740 1176742 1176744, overlap 1176742 AACCGCAGGATATAC ACACACCGG TGC CCGGTGTGG TTGCCTATGATATCA TERM 1608 1176758 - 1176740 - gR 93 -14.6 -3.02649 | opp_overlap 1176739 1176742, overlap 1176742 1176744 ACCGCAGGATATACA CACACCGG TGC CCGGTGTG GTTGCCTATGATATC TERM 1609 1176742 - 1176756 + Gr 74 -11.4 -2.77658 | opp_overlap 1176742 1176740 1176744, overlap 1176739 CGCAGGATATACACA CACCGG TGC CCGGTG TGGTTGCCTATGATA TERM 1610 1176756 - 1176742 - gR 75 -11.4 -3.0682 | opp_overlap 1176739 1176742, overlap 1176740 1176744 CGCAGGATATACACA CACCGG TGC CCGGTG TGGTTGCCTATGATA CJA_0998 1175160 - 1177610 + | putative lipoprotein TERM 1611 1177663 - 1177642 - TR 91 -6.6 -5.60993 | opp_overlap 1177642 GGCGGGACAAAAAAA TAACGGGC TTATGG ACCCGTTA TTTTTTTATGGCGAA TERM 1612 1177642 - 1177663 + Tr 88 -5.9 -5.60993 | gap 1, opp_overlap 1177642 GGCGGGACAAAAAAA TAACGGG-CT TAT GGACCCGTTA TTTTTTTATGGCGAA CJA_0999 1181159 - 1177698 - | Transglutaminase-like superfamily domain protein TERM 1613 1177827 - 1177804 - G 79 -4.4 -5.00616 | opp_overlap 1177805, overlap 1177805 TTGTTTTCGAAAAAA TCGCGCAGGA TTTT TCCCGCGGGT GTTGGTGGCAACAAG TERM 1614 1180145 - 1180131 - G 70 -7.1 -4.09509 | ATCAATGGACACAAA GGTGG GTTCG CCACC GGTGGTCAGGCGTAC TERM 1615 1181352 - 1181372 + H 77 -9 -3.94877 | CAGTCTGCACCCTGT CCGGGTTT TGGAT GAACCCGG TTGTTGTTGGAGCGT CJA_1000 1181363 - 1182568 + | membrane protein, PerM family TERM 1616 1182587 - 1182549 - T 70 -2.3 -5.03715 | gap 1, opp_overlap 1182552 AGGAGCGGGAAAAAA CCTGTG-AGGCAGCAGAA TGAA TTCTGCTGCCAGCGATGG ATTACCCCTCCTGGG CJA_1001 1183323 - 1182589 - | hypothetical protein TERM 1617 1183437 - 1183413 - R 77 -11.5 -3.21934 | opp_overlap 1183418, overlap 1183418 CTTGCGGCACAAAAT GAAAAGCCCCT GAT AGGGGCTTTTA CGCTGGGGACTGGGG TERM 1618 1183432 - 1183418 - R 95 -11.4 -4.73108 | opp_overlap 1183418, overlap 1183413 GGCACAAAATGAAAA GCCCCT GAT AGGGGC TTTTACGCTGGGGAC TERM 1619 1183418 - 1183432 + r 89 -11.4 -4.13767 | opp_overlap 1183418 1183413 GGCACAAAATGAAAA GCCCCT GAT AGGGGC TTTTACGCTGGGGAC CJA_1002 1184278 - 1183457 - | small-conductance mechanosensitive channel CJA_1003 1185021 - 1184305 - | electron transport complex, RnfABCDGE type, E subunit TERM 1620 1184362 - 1184377 + g 77 -6 -4.62069 | overlap 1184363 GGATACCGCTGTTTT ACGCGC ATCA GCGCGC TTTTTCAGATGGGCG CJA_1004 1185665 - 1185018 - | rnfE TERM 1621 1185374 - 1185429 + g 85 -13.4 -3.14132 | gap 1, opp_overlap 1185377 1185380, overlap 1185377 1185381 GTGCCGTAGCGGGAA CAATCAGCGCGATGATTTCCCCGGCGC GAC GCGCCCGGTGAATC-TTGCGTTCATTG TTGCTCAGCCCGAGC TERM 1622 1185377 - 1185426 + g 76 -9.3 -3.71848 | gap 1, opp_overlap 1185377 1185380, overlap 1185374 1185381 CCGTAGCGGGAACAA TCAGCGCGATGATTTCCCCGGCGC GAC GCGCCCGGTGAATC-TTGCGTTCA TTGTTGCTCAGCCCG TERM 1623 1185381 - 1185422 + g 86 -12.3 -3.56142 | gap 1, opp_overlap 1185380 1185377, overlap 1185377 1185374 AGCGGGAACAATCAG CGCGATGATTTCCCCGGCGC GAC GCGCCCGGTGAATC-TTGCG TTCATTGTTGCTCAG CJA_1005 1186750 - 1185680 - | Electron transport complex protein rnfD TERM 1624 1185708 - 1185722 + g 75 -4.9 -4.84359 | overlap 1185693 CGTGGTGTGCTATCG GTCGC ACGGC GCGGC TTTTTATGGCCATAG TERM 1625 1186157 - 1186192 + g 72 -6 -4.40132 | overlap 1186165 GCCTTCCGCCAACAG GGGTTGCTGCTGGTAG AGGT CACCCAGTACCAGCCC TTTGTTCTGCTTGAT CJA_1006 1189111 - 1186751 - | Electron transport complex protein RnfC TERM 1626 1187211 - 1187239 + g 73 -9.5 -3.59979 | GATTCGAGGTTGGCT TTGGCCTTTTCCC CGG GGGGCATGGCCAA TTTAGCCTGGGCCCG TERM 1627 1187610 - 1187626 + g 81 -5.8 -4.87389 | overlap 1187592 1187621 GTTGCGGGTTCGCTG CTGGCT TTCTC GGCCAG TTTCTTTTTGGCCTC TERM 1628 1187788 - 1187774 - G 73 -11.4 -2.70525 | overlap 1187773 TTCTTGCAAATGAAT GCTGCC TTT GGCAGC GCGGTAATACTGTAC CJA_1007 1189783 - 1189112 - | Electron transport complex protein rnfB CJA_1008 1190398 - 1189808 - | RnfA-related protein TERM 1629 1190323 - 1190313 - G 81 -8.2 -4.39426 | GATACGCCCATAAAA GGGC AGA GCCC CAAAAACTGGGCCAG metG 1192616 - 1190577 - | methionyl-tRNA synthetase CJA_1010 1192846 - 1193205 + | hypothetical protein TERM 1630 1193265 - 1193207 - f 86 -14.7 -2.66899 | gap 1, opp_overlap 1193208 1193209 1193224, overlap 1193224 GTTTAATTAAGTAAT CTGTCGCCCATAAAAAACGGCGGTGTGC CTAT GCCCACTGCCGTTTTTTAT-GGCGGCTA GTTTGGGTTTGGATT TERM 1631 1193208 - 1193266 + F 95 -12.8 -3.8698 | gap 3, opp_overlap 1193207 1193224, overlap 1193209 1193224 TTTAATTAAGTAATC -T-GTCGCCCATAAAAAACGGCGGTGTGC CTAT GCCCACTGCCGTTTTTTAT-GGCGGCTAG TTTGGGTTTGGATTC TERM 1632 1193209 - 1193263 + F 100 -23.9 -3.00017 | gap 1, opp_overlap 1193207 1193224, overlap 1193208 1193224 TTAATTAAGTAATCT GTCGCCCATAAAAAACGGCGGTGTGC CTAT GCCCACTGCCGTTTTTTAT-GGCGGC TAGTTTGGGTTTGGA TERM 1633 1193224 - 1193249 + F 100 -12.5 -5.24531 | opp_overlap 1193224 1193207, overlap 1193209 1193208 GTCGCCCATAAAAAA CGGCGGTGTGC CTAT GCCCACTGCCG TTTTTTATGGCGGCT TERM 1634 1193249 - 1193224 - f 100 -10.3 -5.24129 | opp_overlap 1193209 1193208 1193224, overlap 1193207 GTCGCCCATAAAAAA CGGCGGTGTGC CTAT GCCCACTGCCG TTTTTTATGGCGGCT TERM 1635 1193482 - 1193454 - g 88 -2.3 -5.58179 | gap 1 CAGTACAACAAAAAA CGCCTGC-GCGA AATCGA TCGCCGCGTGCG CTACTTGCGCAAATG TERM 1636 1193601 - 1193625 + G 70 -3.6 -4.72272 | gap 1, overlap 1193608 GGCAAAACCCTCACA TTTCG-CGTTG TCGG CTACGACGAAA TTTTTAATCGCAAAG greB 1193295 - 1193768 + | transcription elongation factor GreB TERM 1637 1194106 - 1194082 - g 70 -5.6 -4.39426 | opp_overlap 1194083, overlap 1194083 1194086 CACACCCCTATAAAA GTGACTCGCC GCGCA GGCGAGGCAT TTGTGGTGATCAGTG TERM 1638 1194083 - 1194105 + G 78 -9.1 -3.99592 | opp_overlap 1194083 1194082 1194086 ACACCCCTATAAAAG TGACTCGCC GCGCA GGCGAGGCA TTTGTGGTGATCAGT CJA_1012 1193932 - 1194270 + | prevent-host-death family protein CJA_1013 1194251 - 1194520 + | addiction module toxin, Txe/YoeB family CJA_1014 1195051 - 1194605 - | hypothetical protein TERM 1639 1195155 - 1195166 + rH 82 -7.2 -4.91109 | opp_overlap 1195155 TTCATCGGTGCAAAA CGCG CATG CGCG TTTTTCTGCTGGCGG TERM 1640 1195166 - 1195155 - RH 71 -7.2 -4.08767 | opp_overlap 1195155 TTCATCGGTGCAAAA CGCG CATG CGCG TTTTTCTGCTGGCGG CJA_1015 1197379 - 1195409 - | prolyl oligopeptidase family TERM 1641 1196163 - 1196142 - GH 82 -2.8 -5.24129 | GGTGGGTAGAAAAAA CCGTGGGC TTCCTG GCCATCGG GCGTGGGGTAACTCA TERM 1642 1196164 - 1196181 + gH 78 -9.1 -3.95073 | CTTCCTGGCCATCGG GCGTGGG GTAA CTCACGC TTTGTGGCTGTGCCA TERM 1643 1197045 - 1197014 - GH 73 -10.2 -2.96042 | gap 1, overlap 1197017 1197019 AACATCCAGCACACA GAAGATACCTGTGCG TGT CGC-CAGGTAACTCC CTCCACCATATTCCT TERM 1644 1197040 - 1197019 - GH 73 -9.5 -3.38656 | gap 1, overlap 1197017 1197014 CCAGCACACAGAAGA TACCTGTGCG TGT CGC-CAGGTA ACTCCCTCCACCATA TERM 1645 1197383 - 1197397 + Gr 83 -5.6 -5.06414 | overlap 1197384 1197385 CCATGCTGGCAAAAC TTCGGC AAG GCCGGG TTTTTATTCCGAAGC TERM 1646 1197671 - 1197687 + Gr 78 -7.9 -4.36914 | GTGAAGCTCTCGCGG CGCGCCT GGG AGTCGCG TTTTATGCAGAAAAG TERM 1647 1197934 - 1197959 + Gr 72 -9.7 -3.29511 | GTTCGTCCGCTGTTG TCCTTCAGCCG CAAA CTGCTGGAGGA TTATGCCCGCATCCA mesJ 1197370 - 1198737 + | mesJ protein TERM 1648 1198809 - 1198784 - TR 100 -17.7 -3.66772 | opp_overlap 1198787, overlap 1198787 GGAAACCGCTAACAA CAAGGGGATGC CGAA GCATCCCCTTG TTACGCTAAATGGCG TERM 1649 1198806 - 1198787 - TR 100 -13.6 -3.95725 | opp_overlap 1198787, overlap 1198784 AACCGCTAACAACAA GGGGATGC CGAA GCATCCCC TTGTTACGCTAAATG TERM 1650 1198787 - 1198806 + Tr 93 -13.6 -3.65522 | opp_overlap 1198784 1198787 AACCGCTAACAACAA GGGGATGC CGAA GCATCCCC TTGTTACGCTAAATG TERM 1651 1198847 - 1198874 + Tr 79 -8.4 -4.30576 | gap 1, overlap 1198850 1198852 GTTCTAGTAGAGGTA CACCG-CGCCGGA AGC TTCGGCGTCGTTG TTTTCCTGGTCGCCA TERM 1652 1198850 - 1198871 + Tr 79 -8.7 -4.27443 | gap 1, overlap 1198847 1198852 CTAGTAGAGGTACAC CG-CGCCGGA AGC TTCGGCGTCG TTGTTTTCCTGGTCG TERM 1653 1198852 - 1198868 + Tr 71 -10.1 -3.12766 | overlap 1198850 1198847 AGTAGAGGTACACCG CGCCGGA AGC TTCGGCG TCGTTGTTTTCCTGG CJA_1017 1201078 - 1198835 - | putative lipoprotein TERM 1654 1199927 - 1199916 - G 72 -5.8 -4.34267 | overlap 1199918 GGATAGAACTCAAAA CAGC CCAG GCTG CTGGACGTACTGCTG TERM 1655 1200046 - 1200082 + g 73 -11.7 -2.55668 | gap 1, overlap 1200045 CGCCAAAGCGCATAC CCTCGCTA-ACGCTCA AGTGGC TGAGCGAGTAGCGAGG CTTGATGTAGGCATC TERM 1656 1201297 - 1201322 + r 100 -13.3 -5.06414 | TGTGAGGATTTGTCA GCCCGATGCCA GGTG TGCCATCGGGC TTTTTGTTACGGGGC TERM 1657 1201380 - 1201398 + r 83 -10.2 -3.71527 | opp_overlap 1201376 1201381, overlap 1201381 GTTTTTAAATACTCA ACCAGCGC CAG GCGCTGGG TTTCGCTGATTGGCG TERM 1658 1201397 - 1201381 - R 86 -13.7 -3.24021 | opp_overlap 1201381 1201380, overlap 1201376 TTTTTAAATACTCAA CCAGCGC CAG GCGCTGG GTTTCGCTGATTGGC TERM 1659 1201381 - 1201397 + r 84 -13.7 -2.82595 | opp_overlap 1201376 1201381, overlap 1201380 TTTTTAAATACTCAA CCAGCGC CAG GCGCTGG GTTTCGCTGATTGGC CJA_1018 1203283 - 1201358 - | Y4iJ TERM 1660 1202190 - 1202205 + g 79 -10.4 -3.76224 | opp_overlap 1202182 AGGTAAACCTGGCGC CCCTGG TCGG CCAGGG TTTGGTCAATGGCAG CJA_1019 1203886 - 1203794 - | hypothetical protein TERM 1661 1203972 - 1203949 - gR 75 -5.3 -4.59773 | overlap 1203950 TTTTATTGGCAAAAA TGCTGAAAC CTTTGC GTTTCAGCT GCGCGACTATTTTTC TERM 1662 1203971 - 1203950 - gR 70 -8.8 -3.35542 | overlap 1203949 TTTATTGGCAAAAAT GCTGAAAC CTTTGC GTTTCAGC TGCGCGACTATTTTT CJA_1020 1203635 - 1204180 + | hypothetical protein TERM 1663 1204211 - 1204201 - TR 71 -6.8 -4.09739 | TTAACGCTGCCAAAA CCAG CGC CTGG CAGACAGGGTAAATT CJA_1021 1204551 - 1204186 - | hypothetical protein TERM 1664 1204527 - 1204515 - G 100 -3.3 -5.76949 | CATTTTCAAAAAAAA TCTGG TCG CCCGA GAGTACAACTTGGTA CJA_1022 1206027 - 1204567 - | hypothetical protein TERM 1665 1205663 - 1205637 - G 95 -12.2 -4.07568 | TGGTTGCTTGCAAAA TCCGCCCCAGCG CAT CGCTGCGGCCGA GTTGGCGGCGCACAT TERM 1666 1205787 - 1205750 - G 72 -7.6 -3.86015 | gap 1, overlap 1205751 TAGCCCTGGTAGAAA TCTGCCTCCAGGGCAGG TAACT CCCGCCCCCG-GGCAGC GCGAAATTGGGCTTC TERM 1667 1205786 - 1205751 - G 71 -11.1 -2.91395 | gap 1, overlap 1205750 AGCCCTGGTAGAAAT CTGCCTCCAGGGCAGG TAACT CCCGCCCCCG-GGCAG CGCGAAATTGGGCTT CJA_1023 1206086 - 1206394 + | rieske [2Fe-2S] domain protein CJA_1024 1206421 - 1206855 + | hypothetical protein TERM 1668 1207213 - 1207195 - g 81 -4.4 -5.10461 | opp_overlap 1207200, overlap 1207198 1207199 GGCATTGAAGAAAAA CCAGCGGC GCG GCCGGTCG GTGGCGGGCGGCTCC gt51A 1206833 - 1207576 + | murein polymerase, putative, gt51A CJA_1026 1207727 - 1207999 + | hypothetical protein aspS 1208039 - 1209844 + | aspartyl-tRNA synthetase TERM 1669 1209881 - 1209862 - f 79 -9.2 -4.07687 | opp_overlap 1209863, overlap 1209863 AGTCGCTGGTTAAAA GGGTGGGC AATT GCCCACCT TTTTTTTACAGGGCT TERM 1670 1209863 - 1209880 + F 100 -12.7 -5.75342 | opp_overlap 1209862 1209863 GTCGCTGGTTAAAAG GGTGGGC AATT GCCCACC TTTTTTTTACAGGGC TERM 1671 1209880 - 1209863 - f 80 -12.7 -3.04398 | opp_overlap 1209863, overlap 1209862 GTCGCTGGTTAAAAG GGTGGGC AATT GCCCACC TTTTTTTTACAGGGC CJA_1028 1209946 - 1210689 + | conserved hypothetical protein TIGR01033 TERM 1672 1211214 - 1211181 - g 100 -11.7 -4.65168 | gap 1, overlap 1211182 AGCACATGGTAAAAA CCCTGCTGCGGCTGCC AGC GGC-GCCGCAGGAAGA TGCTGCAGATGCCCT TERM 1673 1211213 - 1211182 - g 89 -13 -3.38378 | gap 1, overlap 1211181 GCACATGGTAAAAAC CCTGCTGCGGCTGCC AGC GGC-GCCGCAGGAAG ATGCTGCAGATGCCC ruvC 1210727 - 1211317 + | crossover junction endodeoxyribonuclease RuvC TERM 1674 1211756 - 1211741 - g 77 -6.8 -4.57569 | opp_overlap 1211748 TGATCGCCTTAAAAA CTGGGA TTTG CCCCAG GGCGATATGCTTGCT ruvA 1211340 - 1211957 + | Holliday junction DNA helicase RuvA TERM 1675 1212686 - 1212704 + G 78 -11 -3.54424 | TATCGCCAACCGACT GTTGCGCA GGG TGCGCGAC TTTGCCGAGGTGAAA ruvB 1212009 - 1213049 + | Holliday junction DNA helicase RuvB TERM 1676 1213188 - 1213204 + F 79 -12.3 -2.92792 | overlap 1213185 TTAGGCTATGATGGG CCCGCTA TTT TAGCGGG TGGTTTACGGTAGGT tolQ-2 1213386 - 1214072 + | tolQ protein tolR 1214104 - 1214541 + | TolR protein TERM 1677 1214613 - 1214628 + G 100 -3.2 -5.75945 | overlap 1214596 AGTGTTGTGTTACAT GCACTG ATAT TGGTGC TTTTTTTTGGCGACT TERM 1678 1214808 - 1214792 - g 79 -3.7 -5.1101 | TGAGGACTTAAAAAA CCTCA AAAACCG TGAGG AGCAAAAGCGCAAAG CJA_1034 1214559 - 1215398 + | putative biopolymer transport protein TolA TERM 1679 1216524 - 1216547 + G 81 -13.2 -2.69468 | opp_overlap 1216517 1216529, overlap 1216521 1216529 TTGATGAATCGCCTA GTATAGCGCC CAAT GGCGCTATGC TGATGTATGCAACTC TERM 1680 1216636 - 1216666 + G 74 -2.5 -5.12617 | gap 1, overlap 1216637 CCAACCTCCAAAACA GGGTGAT-GTGCGG GAGC CCGCATGGTCGCCA TTTTTTAACTAGTTA tolB 1215395 - 1216678 + | tolB protein CJA_1036 1216730 - 1217194 + | outer membrane protein CJA_1037 1217210 - 1217965 + | putative 34 kDa outer membrane protein TERM 1681 1218071 - 1218043 - f 83 -6.6 -4.99043 | gap 1, opp_overlap 1218061, overlap 1218046 1218047 TTTGTATAAATAAAA GAATGGGG-CGCG CTTG CGCGGCCCCCATC GGTCGTTCCTGAGAT TERM 1682 1218069 - 1218046 - f 82 -8 -4.58946 | opp_overlap 1218061, overlap 1218043 1218047 GTATAAATAAAAGAA TGGGGCGCGC TTGC GCGGCCCCCA TCGGTCGTTCCTGAG TERM 1683 1218066 - 1218047 - f 77 -10.6 -3.33741 | opp_overlap 1218061, overlap 1218046 1218043 TATAAATAAAAGAAT GGGGCGCG CTTG CGCGGCCC CCATCGGTCGTTCCT CJA_1038 1218585 - 1219832 + | hypothetical protein CJA_1039 1221138 - 1219864 - | hypothetical protein CJA_1040 1221875 - 1221294 - | inactive regulatory protein ndpA 1223007 - 1221979 - | nucleoid-associated protein NdpA superfamily TERM 1684 1223139 - 1223151 + G 72 -4.7 -4.65916 | overlap 1223140 ATGCCACCCTTTATC AGGGC ATT GCCCA TTTTGTTGAAGTGCC CJA_1042 1223084 - 1223443 + | endoribonuclease L-PSP family protein CJA_1044 1223571 - 1226051 + | acetyltransferase, GNAT family hda 1227074 - 1226046 - | histone deacetylase family protein TERM 1685 1226927 - 1226949 + gF 71 -9.8 -3.1372 | overlap 1226925 GGCGCTCTGCACATT CCGGATGGCC GGC GGGCATCTGG TGTTGGTGGCAACTG TERM 1686 1227118 - 1227099 - gH 85 -2.8 -5.40072 | gap 1, opp_overlap 1227099 1227116, overlap 1227101 CTGGCGCGAAAAAAA TACCTG-GC CAG GCTCAGGGA TAATTTTAAGTTTGG TERM 1687 1227116 - 1227101 - gH 70 -5.4 -4.34482 | gap 1, opp_overlap 1227099, overlap 1227099 GGCGCGAAAAAAATA CCTG-GC CAG GCTCAGG GATAATTTTAAGTTT TERM 1688 1227967 - 1228001 + GH 79 -10.7 -3.54424 | overlap 1227955 GTTCCCTGCCTGCTT CCAGGGTCATTGAAG AAGCG CGCCAATGGCCCTGG TTTACGGGCGTGAAG CJA_1045 1227045 - 1229216 + | sulfatase TERM 1689 1230035 - 1230024 - g 77 -5.8 -4.64861 | CCTCTGGAAAATAAA CAGC CAGG GCTG GGCTATAGATCGTAT TERM 1690 1230184 - 1230199 + G 71 -3.2 -4.83615 | overlap 1230186 CTTTCCGATCATGAG TTGGCG ACCT TGCCGA TTTTTATCGAACATC CJA_1046 1229290 - 1231023 + | hypothetical protein TERM 1691 1231073 - 1231046 - f 73 -10.8 -3.0264 | gap 1 AAATCTTTTTGAATA TGTCAGCTTGATC GCC GATCAAGCTGA-A TGACGTCAACAGGTA TERM 1692 1231292 - 1231242 - g 78 -8.9 -4.17048 | gap 1, opp_overlap 1231275 CCGTTCCCAAAATAA TGGCTGCCACGGGAATGCCGCGCC GCAC GGCACAGGATACCC-TGGCGGCTA TCCATGAGTTAGCCA CJA_1047 1231115 - 1231420 + | hypothetical protein TERM 1693 1231602 - 1231643 + G 81 -5.8 -4.86731 | gap 1, opp_overlap 1231616, overlap 1231605 CGGCATTGTGGTTGG CGCCCTGGCGACAATTGGC GGCCA GCCAATCG-CGCCAGCATG TTTTCTTTGCAGCCA CJA_1048 1231469 - 1232221 + | hypothetical protein rebH 1233747 - 1232236 - | tryptophan halogenase TERM 1694 1233552 - 1233542 - G 82 -2.4 -5.41143 | CACTCGCGAAAAAAA TCGG TTT CCGC AATGCCCATGTCTCT TERM 1695 1233813 - 1233776 - R 90 -14.5 -3.19246 | gap 1, opp_overlap 1233786, overlap 1233786 TTAAGCGGAAGCCAA TAAACAAAAAGGCCATTC AGC GAATGGCCTTTTTGCT-A GTACACAGGGTTATG TERM 1696 1233804 - 1233786 - R 100 -13.2 -5.47159 | opp_overlap 1233786, overlap 1233776 GCCAATAAACAAAAA GGCCATTC AGC GAATGGCC TTTTTGCTAGTACAC TERM 1697 1233786 - 1233804 + r 100 -13.2 -4.77036 | opp_overlap 1233786 1233776 GCCAATAAACAAAAA GGCCATTC AGC GAATGGCC TTTTTGCTAGTACAC CJA_1050 1236568 - 1233842 - | TonB-dependent receptor TERM 1698 1236813 - 1236828 + r 91 -7.5 -5.13473 | opp_overlap 1236813 CCCGGATATGAAAAA CGCCC ATTGAA GGGCG TTTTTTCGATGTGCT TERM 1699 1236828 - 1236813 - R 84 -7.5 -4.8048 | opp_overlap 1236813 CCCGGATATGAAAAA CGCCC ATTGAA GGGCG TTTTTTCGATGTGCT CJA_1051 1238300 - 1236852 - | amino acid permease TERM 1700 1237672 - 1237661 - G 70 -5.8 -4.2349 | GGTTCACATGGAAAA TGGC TACC GCCA GGAAAACAGCAATGG TERM 1701 1237931 - 1237899 - G 88 -11.4 -3.72893 | CAGCGCGTTATTAAA GTAGCCCGCC-CAGCC ATT GGCTACGGCGG-CTAC GGCAACACCGTATTC CJA_1052 1240043 - 1238613 - | hypothetical protein CJA_1053 1240365 - 1240264 - | hypothetical protein TERM 1702 1240357 - 1240342 - G 74 -10.4 -3.50047 | GGCATAAATTGATAA GCCTGC CAGA GCAGGC AGATTCACCTTGGCC TERM 1703 1241835 - 1241851 + GH 76 -5 -4.82901 | opp_overlap 1241831 1241833, overlap 1241837 GCGATACTGAATACG CCGCGC GTATG GCGCTG TTTTTGTGGAGCAGC TERM 1704 1242382 - 1242354 - gH 89 -13.7 -3.17075 | TGCTGGCCAATTTAA TGGCGGCGCCACC GCC GGCCGCGCCGCCC GATGTGCCCGCGTTG TERM 1705 1242663 - 1242642 - gH 72 -8.7 -3.75332 | gap 1, opp_overlap 1242642 1242642 AGGTGTTAATGGAAA GCCGCCAGCA ATT TGCCGG-GGC CTTTACCGAGCGCTT CJA_1054 1240385 - 1242862 + | hypothetical protein TERM 1706 1243492 - 1243471 - gf 100 -15.9 -5.14563 | opp_overlap 1243485 CGCTGGACGAAAAAA GTCGCCAGG CGCG CCTGGCGAC CAAAGCCAGTATTCT CJA_1055 1242834 - 1244189 + | hypothetical protein TERM 1707 1244806 - 1244816 + G 79 -4 -5.15969 | AAACCGCCAAGGGAT TAAC GCC GTTA TTTTTTGCGTTGCGC CJA_1056 1244265 - 1245566 + | putative ankyrin G cycP 1245563 - 1246060 + | cytochrome c'' TERM 1708 1246650 - 1246666 + G 72 -8 -3.96624 | opp_overlap 1246650 1246649, overlap 1246653 1246656 CATCGGCAATGAAAC CCGCAA GCCTG TTGCGG TTTGTGATAGGCGTG cybP 1246064 - 1246741 + | CybP CJA_1059 1246757 - 1247635 + | putative hydrolase TERM 1709 1247688 - 1247713 + T 100 -21.9 -4.05788 | opp_overlap 1247688 TGGGCAATAAAAAAA GCCCCGCTGGC GCAA GCCAGCGGGGC TTTGGTTTAGCAACG TERM 1710 1247713 - 1247688 - T 100 -21.9 -5.7946 | opp_overlap 1247688 TGGGCAATAAAAAAA GCCCCGCTGGC GCAA GCCAGCGGGGC TTTGGTTTAGCAACG TERM 1711 1247744 - 1247754 + T 76 -4.6 -5.00611 | opp_overlap 1247727, overlap 1247723 1247721 GCTAAAGCTTATTTA GCGG CTG CTGC TTTCTTTTCTTTCTC CJA_1060 1249830 - 1247737 - | translation elongation factor G TERM 1712 1248185 - 1248170 - G 72 -8.2 -3.727 | TCCAGTACAGGGAAA CCGGCC AATG GGCCAG TGCCCATCATAGACT TERM 1713 1248661 - 1248683 + g 77 -9.8 -3.64049 | GGTACAGGGGTTTTT CGGGTCGCAC AGG GTGTGACCGG TTTGCACGTTCTTCA TERM 1714 1250022 - 1250039 + r 84 -8.4 -4.56597 | opp_overlap 1250022 CGGTGATACGAAAAA GGCGCA GGTGAG TGCGCC TTTTTCGCCAGGGGG TERM 1715 1250039 - 1250022 - R 88 -8.4 -4.8048 | opp_overlap 1250022 CGGTGATACGAAAAA GGCGCA GGTGAG TGCGCC TTTTTCGCCAGGGGG gcvP 1252977 - 1250068 - | glycine dehydrogenase TERM 1716 1253206 - 1253216 + G 72 -4.6 -4.65078 | AACTTTCTGGATATA CCGT AAT GCGG TTTTATTGGGGCTAT CJA_1062 1253177 - 1254361 + | metabolite transport protein-like protein TERM 1717 1254953 - 1254967 + G 71 -9.2 -3.54129 | opp_overlap 1254953 1254952 GGAGTTAAAAAAATT GCTGGC ATT GCCGGC TTTGCGCCAGCTCTC TERM 1718 1255662 - 1255650 - g 100 -3.3 -5.61881 | overlap 1255651 TGTGAAAAACAAAAA GCCAG TAG CTGGA ATGAATTGCGCGAAA gspA 1254399 - 1256162 + | general secretion pathway protein a CJA_1064 1256162 - 1257028 + | hypothetical protein TERM 1719 1257072 - 1257050 - T 77 -11.3 -3.22653 | gap 1, opp_overlap 1257049 1257048, overlap 1257048 AGGAGGCGTAGAACA GGCGG-GGCT TAGG AGCCACCGCC CATTTTGGACTGCAG bfr 1257534 - 1257058 - | bacterioferritin CJA_1066 1257945 - 1257688 - | bacterioferritin-associated ferredoxin-related protein TERM 1720 1258292 - 1258273 - g 81 -4.9 -5.1101 | opp_overlap 1258286, overlap 1258274 TTAGTAGGCAAAAAA GCACCGG ACTTTA CCGCTGC TGCGGTATTGGCAAG CJA_1067 1258249 - 1258851 + | probable peroxidase TERM 1721 1258864 - 1258885 + F 76 -8.1 -4.14243 | opp_overlap 1258855, overlap 1258856 1258855 TAAGCAGCGTTACCA GTAAAATCG GTAA CGGTTTTAC TTTTGGCGTCAAGTC TERM 1722 1258910 - 1258929 + F 100 -13.6 -4.90266 | opp_overlap 1258910 CAAGTCTTGTAAAAA GCCCGACA CTTT TGTCGGGC TTTTTCGTTAATGGC TERM 1723 1258929 - 1258910 - f 100 -13.6 -4.58283 | opp_overlap 1258910 CAAGTCTTGTAAAAA GCCCGACA CTTT TGTCGGGC TTTTTCGTTAATGGC ung 1259032 - 1259640 + | uracil-DNA glycosylase TERM 1724 1259697 - 1259649 - f 86 -9.2 -4.5442 | gap 1, overlap 1259651 1259652 CCTCTAATCACAAAA TAGCCCCTTCTTATGATCA-AAT AGTC ATTGTGATCATAAGAAGGTGTCA AAAATAGTACAGAAA TERM 1725 1259695 - 1259651 - f 80 -9.6 -3.8823 | gap 1, overlap 1259649 1259652 TCTAATCACAAAATA GCCCCTTCTTATGATCA-AAT AGTC ATTGTGATCATAAGAAGGTGT CAAAAATAGTACAGA TERM 1726 1259694 - 1259652 - f 82 -13.1 -2.92215 | gap 1, overlap 1259651 1259649 CTAATCACAAAATAG CCCCTTCTTATGATCA-AAT AGTC ATTGTGATCATAAGAAGGTG TCAAAAATAGTACAG CJA_1069 1259961 - 1263080 + | putative TonB-dependent receptor TERM 1727 1263099 - 1263071 - f 85 -12.7 -3.34517 | opp_overlap 1263073, overlap 1263074 ACTGGGTGCCAAATA CAAGTTCTAATAA ACG TTATTAGAACCTG ATTGAGAAAGGGCAA TERM 1728 1263096 - 1263074 - f 83 -10.8 -3.81488 | opp_overlap 1263073, overlap 1263071 GGGTGCCAAATACAA GTTCTAATAA ACG TTATTAGAAC CTGATTGAGAAAGGG TERM 1729 1263109 - 1263130 + F 100 -11.7 -5.8187 | opp_overlap 1263109 AACCTGATTGAGAAA GGGCAATAT GAGA ATATTGCCC TTTTTTTATTCGATG TERM 1730 1263130 - 1263109 - f 95 -11.7 -3.92641 | opp_overlap 1263109 AACCTGATTGAGAAA GGGCAATAT GAGA ATATTGCCC TTTTTTTATTCGATG TERM 1731 1264260 - 1264229 - g 74 -8 -4.06491 | gap 1 TCAAGTTTATAGAAA TGTTGCCTGCG-GGA AAC TCCACCCAGGCTACA CAAGATGAATACAAC CJA_1070 1263166 - 1264665 + | tryptophan halogenase TERM 1732 1264873 - 1264894 + F 100 -12.3 -6.06723 | GACGTCTCCCTCTTA CCTTCCGGG GTTT CTCGGAAGG TTTTTTTTTGCCAGG CJA_1071 1265164 - 1266294 + | phosphoserine aminotransferase TERM 1733 1266333 - 1266314 - f 93 -13.6 -3.55444 | opp_overlap 1266314 TCCGGATTCTCGAAA GGGCTGTG TTAA CACAGCCC TTTTTACTTGCAGAC TERM 1734 1266314 - 1266333 + F 100 -13.6 -4.8622 | opp_overlap 1266314 TCCGGATTCTCGAAA GGGCTGTG TTAA CACAGCCC TTTTTACTTGCAGAC TERM 1735 1266378 - 1266358 - f 73 -9.6 -3.35934 | GCAGACAGCTTATAA CCCGGCGC GTTGG GGGCCGGG GTTAAACAGAAGGAA CJA_1072 1266400 - 1267575 + | D-isomer specific 2-hydroxyacid dehydrogenase TERM 1736 1267685 - 1267735 + GF 72 -7.6 -4.00066 | overlap 1267686 1267721 1267729 TATGCAGAGTGCTGC TGGCAAG-TGCCTGGGCAAGGG CAATTTCGC CCCTTGCCC-GGCAGCCAGCCG TTTCTGGGTTGTGAA TERM 1737 1267832 - 1267861 + GF 74 -8.6 -3.88766 | gap 1 GCGGTCATTGCCCTG CGCGAGGCTCATC CCTAT GAAGAGCCT-GCG TTTGATGTGTGGCGT CJA_1073 1267580 - 1267894 + | hypothetical protein CJA_1074 1267866 - 1268507 + | hydrolase, NUDIX family TERM 1738 1269148 - 1269165 + G 73 -9.1 -3.66288 | ACCAGCTCAATGATT CCGGTGC AAAA GCACTGG TTGTATTGGCGAATA TERM 1739 1269742 - 1269754 + G 72 -6.3 -4.35461 | overlap 1269744 TACGCAACCCGGATT TCCAA AAA TTGGA TTTTAGTCATCTTCG fadD1 1268838 - 1270466 + | long-chain-fatty-acid--CoA ligase TERM 1740 1270488 - 1270519 + F 100 -10.8 -5.28176 | opp_overlap 1270491, overlap 1270491 TTTATCTGACTGCAC AAACCCGCGCGTGG TAAT TCACGGGCGGGTTG TTTTTTCTGAATAAC TERM 1741 1270516 - 1270491 - f 95 -11.8 -3.89524 | opp_overlap 1270488 1270491 ATCTGACTGCACAAA CCCGCGCGTG GTAATT CACGGGCGGG TTGTTTTTTCTGAAT TERM 1742 1270491 - 1270516 + F 100 -12.5 -4.73105 | opp_overlap 1270491, overlap 1270488 ATCTGACTGCACAAA CCCGCGCGTGG TAAT TCACGGGCGGG TTGTTTTTTCTGAAT CJA_1076 1270552 - 1271481 + | hypothetical protein CJA_1077 1271490 - 1271966 + | hypothetical protein uvs083 1271979 - 1273118 + | Uvs083 TERM 1743 1273144 - 1273159 + T 100 -11.8 -5.05782 | opp_overlap 1273144 GTGAACCCTAAAAAA CGCCGC GGTT GCGGCG TTTTTTAGGGTCGGT TERM 1744 1273159 - 1273144 - T 100 -11.8 -5.09426 | opp_overlap 1273144 GTGAACCCTAAAAAA CGCCGC GGTT GCGGCG TTTTTTAGGGTCGGT CJA_1079 1273690 - 1273187 - | hypothetical protein cysI 1275440 - 1273674 - | sulphite reductase TERM 1745 1274095 - 1274077 - G 77 -3.1 -5.10461 | gap 1, overlap 1274078 1274079 GCGAGTGAACAAAAA TC-GCCGC CGGG GCAGCAGA TAATATCGGTGATGG CJA_1081 1275443 - 1275562 + | hypothetical protein CJA_1082 1275607 - 1276272 + | ribosomal large subunit pseudouridine synthase A CJA_1083 1276334 - 1277467 + | hypothetical protein TERM 1746 1277483 - 1277523 + T 86 -13.4 -3.40371 | gap 1, opp_overlap 1277498 TTCCGGTCTGTATGG CTTGT-GTACCACCAAGGG GTTG CCCTTGGTGGTTCGACGGG TTGATTCCTAGCGTG CJA_1084 1278391 - 1277531 - | Integral membrane protein DUF6 domain protein TERM 1747 1278558 - 1278604 + r 100 -16.1 -3.29043 | opp_overlap 1278575, overlap 1278539 1278537 1278561 1278562 1278565 GCCAGTCTGTATTGC CAGGGTATTGGTCACAAGCTC ACTCG GAGCTTGTGACCAATAGGTTG TTATCCAGGCAGGTT TERM 1748 1278561 - 1278601 + r 100 -14.2 -3.78934 | opp_overlap 1278575, overlap 1278539 1278537 1278558 1278562 1278565 AGTCTGTATTGCCAG GGTATTGGTCACAAGCTC ACTCG GAGCTTGTGACCAATAGG TTGTTATCCAGGCAG TERM 1749 1278562 - 1278600 + r 100 -17.7 -2.87146 | opp_overlap 1278575, overlap 1278537 1278561 1278558 1278565 GTCTGTATTGCCAGG GTATTGGTCACAAGCTC ACTCG GAGCTTGTGACCAATAG GTTGTTATCCAGGCA TERM 1750 1278565 - 1278597 + r 100 -19.4 -2.68806 | opp_overlap 1278575, overlap 1278562 1278561 1278558 TGTATTGCCAGGGTA TTGGTCACAAGCTC ACTCG GAGCTTGTGACCAA TAGGTTGTTATCCAG CJA_1085 1280276 - 1278624 - | sodium:solute symporter family protein TERM 1751 1279416 - 1279380 - G 81 -8.7 -4.36914 | TCCGGTGGCATAAAA CACGGAGCGGCG-CGCC TGTAC GGCATCGC-GCACCGTG AAAAAGCGCATCAGG CJA_1086 1280596 - 1280276 - | hypothetical protein TERM 1752 1280771 - 1280750 - R 75 -10.1 -3.56836 | AAACTAGCGTCTAAA GCCCGCTTG CATA CAAGCTGGC GGGGCGGGTCAGATC CJA_1087 1281376 - 1280780 - | DNA-binding response regulator, LuxR family CJA_1088 1282486 - 1281386 - | two-component system sensor protein CJA_1089 1282685 - 1283197 + | conserved hypothetical protein TIGR00645 TERM 1753 1283221 - 1283272 + T 100 -16.2 -5.03715 | opp_overlap 1283213 1283236, overlap 1283212 1283236 1283271 GTAATATGGGGTATC CCTGTTAATAAAAAACCCGACAGA GCAT TGTGTCGGGTTTTTTATTGGAAGG TTTTTTAAGCCTGGT TERM 1754 1283257 - 1283236 - T 100 -8.7 -5.4505 | opp_overlap 1283221 1283236 CCTGTTAATAAAAAA CCCGACAGA GCAT TGTGTCGGG TTTTTTATTGGAAGG TERM 1755 1283236 - 1283257 + T 100 -8.7 -5.4505 | opp_overlap 1283236, overlap 1283221 CCTGTTAATAAAAAA CCCGACAGA GCAT TGTGTCGGG TTTTTTATTGGAAGG CJA_1090 1285151 - 1283277 - | FAD binding domain protein dapE 1286512 - 1285352 - | succinyl-diaminopimelate desuccinylase TERM 1756 1286113 - 1286141 + g 95 -12.5 -4.07568 | AAAAAGCGATGCGAC CTTTGTGGTTGGG GTG CCTGGCCACAAAG TTTTCGCAGGCGACC TERM 1757 1286641 - 1286610 - R 100 -15.9 -5.1101 | gap 1, opp_overlap 1286618 CGATTAGCGAAAAAA GCCCCGCACCTGCC ACGGG GGCAGG-GCGAGGC AGGTGCATTAAACCG hspC2 1287248 - 1286658 - | small heat shock protein TERM 1758 1287339 - 1287315 - R 95 -12.1 -3.85698 | overlap 1287316 CCTGTTGCTCAGAAA GGCGAGGGCAA TCG CTGCCCTCGCA CAGACAACTTAGGCT TERM 1759 1287338 - 1287316 - R 93 -15.6 -2.91276 | overlap 1287315 CTGTTGCTCAGAAAG GCGAGGGCAA TCG CTGCCCTCGC ACAGACAACTTAGGC CJA_1093 1287815 - 1287348 - | 16 kDa heat shock protein A TERM 1760 1288714 - 1288757 + G 78 -10.9 -3.4252 | opp_overlap 1288714 1288711, overlap 1288694 GCGCGGTTACAAGCA GCGGGTCGGTGTTGCCCAG GCGTTA CTGGGCAAGCCCAGCCTGC TTATCCTGGATGAAC TERM 1761 1289139 - 1289124 - g 74 -6.1 -4.58283 | opp_overlap 1289093 CAACCCTGGCAAAAA CCCTG GTTGCA CAGGG TGCCGAGCTTTACCA CJA_1094 1288298 - 1289254 + | ABC transporter domain protein TERM 1762 1289521 - 1289533 + G 72 -5.5 -4.46212 | TACTCACCCAACCAG TGCCG CTG TGGCA TTTTGTGGTGGGCAA TERM 1763 1289691 - 1289701 + G 71 -3.2 -4.80736 | TTGGGTGCGGCTTAC CTGA GCA TCGG TTTGTTTGTTTCGTC TERM 1764 1290699 - 1290689 - g 85 -8.2 -4.53703 | AAAACAACAGCAAAA GGCC AAT GGCC GCCTGCAGGTTAACT TERM 1765 1291149 - 1291134 - g 84 -7.6 -4.72272 | opp_overlap 1291133 GCCCTGGATGAAAAA CAACTG TTTG CAGTTG ATCAATTCCTGATGC TERM 1766 1291652 - 1291635 - g 100 -2 -5.86061 | gap 1, overlap 1291638 GGGGAGCAAAAAAAA CATCTGC TGGGC GCAG-TG GTGCAAGGCCGGTTT CJA_1095 1289244 - 1292135 + | hypothetical protein TERM 1767 1292216 - 1292234 + G 74 -7.4 -4.00445 | opp_overlap 1292216, overlap 1292218 1292219 TATCACCACAAAGCA TGGCTGGT CGC GCCAGCTA TTGTTATTGCTGGTG CJA_1096 1292151 - 1293149 + | hypothetical protein TERM 1768 1293167 - 1293195 + T 100 -19.7 -4.26189 | opp_overlap 1293172, overlap 1293172 TATTGGCGACGCTAA CAAAACGGGCGCG TGG TGCGCCCGTTTTG TTTTACAGTTTATCC TERM 1769 1293172 - 1293190 + T 100 -13.8 -5.10163 | opp_overlap 1293172, overlap 1293167 GCGACGCTAACAAAA CGGGCGCG TGG TGCGCCCG TTTTGTTTTACAGTT TERM 1770 1293190 - 1293172 - T 100 -13.1 -4.65916 | opp_overlap 1293167 1293172 GCGACGCTAACAAAA CGGGCGC GTGGT GCGCCCG TTTTGTTTTACAGTT CJA_1097 1293434 - 1293198 - | hypothetical protein TERM 1771 1293272 - 1293259 - G 74 -2.3 -5.03715 | opp_overlap 1293271 ATGAGTTGTAAAAAA GCTGA TCGA TCGGC GTTGGCTGCACGCTC TERM 1772 1293303 - 1293319 + g 71 -2.2 -5.02074 | overlap 1293308 TTTTAGATATTCTTC TGTCAG GTAGG CTGCCA TTTTTTCCGCGATAG CJA_1098 1293811 - 1293431 - | hypothetical protein TERM 1773 1293509 - 1293491 - G 74 -10.4 -3.43773 | opp_overlap 1293497 1293502, overlap 1293489 GTTGATACCGAAATA TTTTTCCG TAC CGGAAAAA TCCCGTTCGTTAAAT TERM 1774 1293949 - 1293975 + r 76 -11.6 -2.71712 | opp_overlap 1293953, overlap 1293948 1293952 1293953 CATAGCCACTAAATA TAAAGTGCCAGC AAG GCTGGCACGTTG ATTTGACGAGACCGG TERM 1775 1293952 - 1293972 + r 82 -11.1 -3.51232 | opp_overlap 1293953, overlap 1293949 1293948 1293953 AGCCACTAAATATAA AGTGCCAGC AAG GCTGGCACG TTGATTTGACGAGAC TERM 1776 1293971 - 1293953 - R 100 -14.6 -4.36903 | opp_overlap 1293952 1293949 1293948 1293953 GCCACTAAATATAAA GTGCCAGC AAG GCTGGCAC GTTGATTTGACGAGA TERM 1777 1293953 - 1293971 + r 86 -14.6 -2.70525 | opp_overlap 1293953, overlap 1293952 1293949 1293948 GCCACTAAATATAAA GTGCCAGC AAG GCTGGCAC GTTGATTTGACGAGA CJA_1099 1294697 - 1293996 - | conserved hypothetical protein TIGR01033 TERM 1778 1294143 - 1294160 + g 75 -4.8 -4.83615 | opp_overlap 1294143 GGAGACAACGGTAAA GCCTTG GCCGGG CAGGGC TTTTTGTACCAGGTC TERM 1779 1294526 - 1294538 + g 77 -3.3 -5.03145 | GTTCCAGGGTTTCAC GCGTC ATG GAGGC TTTTTTGGCCGCTTC dapD 1295793 - 1294762 - | tetrahydrodipicolinate N-succinyltransferase CJA_1101 1296176 - 1295832 - | Protein yffB TERM 1780 1296134 - 1296150 + g 73 -3.7 -4.7373 | GCCAGTTACGCGCTT TTTTGAC GGT GTCACAA TTTTTAATGCCGTAG CJA_1102 1296889 - 1296173 - | endonuclease III CJA_1103 1298040 - 1296841 - | aminotransferase, class I glnD 1300788 - 1298071 - | protein-P-II uridylyltransferase TERM 1781 1298643 - 1298663 + g 100 -11.2 -5.52384 | opp_overlap 1298631, overlap 1298637 1298631 AGATTTGCGTGGCGC CCGCCAAT TCCTT ATTGGCGG TTTTTTTGATCAGGA TERM 1782 1298945 - 1298919 - G 77 -8.6 -4.0641 | opp_overlap 1298919, overlap 1298920 GGGTATCCAGATAAA GCTGGCGCATCA GGC TGGCGCGCCAGG TATTCCACAGTTCCT TERM 1783 1298944 - 1298920 - G 79 -12.1 -3.03525 | opp_overlap 1298919, overlap 1298919 GGTATCCAGATAAAG CTGGCGCATCA GGC TGGCGCGCCAG GTATTCCACAGTTCC TERM 1784 1300098 - 1300108 + g 71 -2.4 -4.88228 | GTATATCGCGCAATC CGCC GGG GGCA TTTTTGATATTGGGT TERM 1785 1300731 - 1300717 - G 74 -2.1 -5.14563 | GCTTTGATCAAAAAA GAACA GCGGA CGTTC GAAGTAGGGCACCAT map 1301652 - 1300861 - | methionine aminopeptidase, type I TERM 1786 1301459 - 1301469 + g 72 -4.6 -4.62471 | CGATAGCCCAGGCAG GCGG GAA TCGC TTTTTGCACATTAAC CJA_1106 1301943 - 1302431 + | hypothetical protein CJA_1107 1302483 - 1303109 + | superoxide dismutase CJA_1108 1303109 - 1304029 + | gufA protein TERM 1787 1304068 - 1304018 - T 95 -16.5 -2.5805 | gap 1, opp_overlap 1304031, overlap 1304031 ATGATCCTCGACAAT GCCTTTCAATAAACTGCCGATCAA TACA TTGATCGGCAGTTTATTCAG-GGC GCGCTCCTTCACGAA TERM 1788 1304056 - 1304031 - T 100 -16.3 -4.15222 | opp_overlap 1304031, overlap 1304018 ATGCCTTTCAATAAA CTGCCGATCAA TACA TTGATCGGCAG TTTATTCAGGGCGCG TERM 1789 1304031 - 1304056 + T 100 -16.3 -4.15044 | opp_overlap 1304018 1304031 ATGCCTTTCAATAAA CTGCCGATCAA TACA TTGATCGGCAG TTTATTCAGGGCGCG uxuA 1305314 - 1304097 - | mannonate dehydratase rpsB 1305699 - 1306439 + | ribosomal protein S2 TERM 1790 1306468 - 1306492 + F 74 -10.7 -3.28712 | opp_overlap 1306467 1306468, overlap 1306469 TAAACGACCATAAAG TTCCCGCACAC TTC GTGTTCGGGAG TTGTCGGAAGAGGGG TERM 1791 1306469 - 1306491 + F 76 -12 -2.57132 | opp_overlap 1306468 1306467, overlap 1306468 AAACGACCATAAAGT TCCCGCACAC TTC GTGTTCGGGA GTTGTCGGAAGAGGG TERM 1792 1306504 - 1306518 + F 100 -12.8 -5.01732 | opp_overlap 1306504 GGAGTTGTCGGAAGA GGGGGC TAG GCCCCC TTTTTTCAACCGGTT TERM 1793 1306518 - 1306504 - f 80 -12.8 -3.02144 | opp_overlap 1306504 GGAGTTGTCGGAAGA GGGGGC TAG GCCCCC TTTTTTCAACCGGTT TERM 1794 1306659 - 1306639 - g 74 -2.4 -5.16572 | ATGGAATGTAAAAAA GCCCTGGG TGATG CCAATGGC GATATCGAGCTGGCG tsf 1306564 - 1307436 + | translation elongation factor Ts TERM 1795 1307446 - 1307496 + F 84 -13.7 -2.85999 | gap 1, opp_overlap 1307459, overlap 1307459 TCGTAATTTCTCCCG GTGAG-ATAAAAAAGCCCTGTATT GCAG AATGCAGGGCTTTTTTATTCTGGC TATACTCTGCGATAC TERM 1796 1307482 - 1307459 - f 100 -9.6 -5.36441 | opp_overlap 1307446 1307459 CGGTGAGATAAAAAA GCCCTGTATT GCAG AATGCAGGGC TTTTTTATTCTGGCT TERM 1797 1307459 - 1307482 + F 100 -11.8 -5.56673 | opp_overlap 1307459, overlap 1307446 CGGTGAGATAAAAAA GCCCTGTATT GCAG AATGCAGGGC TTTTTTATTCTGGCT TERM 1798 1307902 - 1307879 - g 81 -4.6 -5.06414 | GTGGGGCAAGAAAAA GGAAGATCCT TATA AAGATCTTTC GCCCCAGGACAGGCG CJA_1112 1307571 - 1309094 + | hypothetical protein TERM 1799 1309468 - 1309487 + G 81 -6.4 -4.78848 | TATCAATGGATTTGG TCTCCTGG AGCA TCAGGGGA TTTTGTATTTCCGGC CJA_1113 1309151 - 1309690 + | hypothetical protein TERM 1800 1309669 - 1309708 + F 82 -7.9 -4.57353 | gap 1, overlap 1309671 1309672 TGAGTTTGCGCATCT GATC-CTGGGTGATCTGG CGTAA CCAGATCACCCACCGGGC TTTTCTGTCATCCCC TERM 1801 1309671 - 1309707 + F 70 -8.9 -3.3393 | gap 2, overlap 1309669 1309672 AGTTTGCGCATCTGA TCC--TGGGTGATCTGG CGTAA CCAGATCACCCACCGGG CTTTTCTGTCATCCC TERM 1802 1309672 - 1309706 + F 71 -10.2 -2.59876 | gap 2, overlap 1309671 1309669 GTTTGCGCATCTGAT CC--TGGGTGATCTGG CGTAA CCAGATCACCCACCGG GCTTTTCTGTCATCC TERM 1803 1309971 - 1309990 + G 85 -8.6 -4.56597 | overlap 1309959 CGTACAGGTGGGCCT GGTTATCG GTGG CGGTAACC TTTTTCGCGGCGCAG pyrH 1309813 - 1310547 + | uridylate kinase frr 1310652 - 1311104 + | ribosome recycling factor TERM 1804 1311110 - 1311136 + F 78 -12.2 -2.71263 | opp_overlap 1311105 GGCAATCTAACCTCC GTTGCCCGGACA TGA TGTCCGGGCTCC TGATTCACAGACCTT uppS 1311223 - 1311972 + | undecaprenyl diphosphate synthase cdsA 1311965 - 1312804 + | phosphatidate cytidylyltransferase TERM 1805 1312785 - 1312807 + F 71 -3.4 -4.82901 | gap 1 CACTCGCACTGCTTG CCTC-GGGC ATGGTG GCCTAGAGG TTTTTATGGGCAGAC dxr 1312813 - 1314009 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1806 1314753 - 1314769 + G 70 -7.2 -4.12188 | GTTTTGTCGGACAGC CCTGCC CAGTT GGCGGG TTTTCAAGCTGGTGA TERM 1807 1315255 - 1315271 + G 73 -3.7 -4.81082 | TGCCCATACCGGTTT TGGATGG CGG CCATTTA TTTTATTACTTCATT CJA_1119 1314036 - 1315409 + | putative membrane-associated zinc metalloprotease TERM 1808 1315495 - 1315506 + G 100 -3.6 -5.97575 | ATGCGTTTTTTTTGC TGCC TGCT GGCG TTTTTTTTATCGGTT TERM 1809 1316696 - 1316680 - g 81 -7.3 -4.66535 | AAGGTTGAAAACAAA GAAGTTC CCG GAACCTC GGATCAAATCGATGT CJA_1120 1315480 - 1318122 + | outer membrane protein, bacterial surface antigen family TERM 1810 1318128 - 1318157 + F 82 -13 -2.78018 | gap 1, opp_overlap 1318128 1318130 1318134, overlap 1318129 1318134 AACATTCTAGGAAAA CA-CAAAGCCCGG CCTCC CCGGGCTTTGGTG TAGTTAATAACCACT TERM 1811 1318157 - 1318128 - f 95 -13 -4.28018 | gap 1, opp_overlap 1318128 1318129 1318134, overlap 1318130 1318134 AACATTCTAGGAAAA CA-CAAAGCCCGG CCTCC CCGGGCTTTGGTG TAGTTAATAACCACT TERM 1812 1318129 - 1318155 + F 79 -12.3 -2.93723 | opp_overlap 1318128 1318130 1318134, overlap 1318128 1318134 ACATTCTAGGAAAAC ACAAAGCCCGG CCTCC CCGGGCTTTGG TGTAGTTAATAACCA TERM 1813 1318154 - 1318130 - f 100 -15.8 -3.73756 | opp_overlap 1318129 1318128 1318134, overlap 1318128 1318134 CATTCTAGGAAAACA CAAAGCCCGG CCTCC CCGGGCTTTG GTGTAGTTAATAACC TERM 1814 1318150 - 1318134 - f 93 -10.8 -4.48449 | opp_overlap 1318129 1318128 1318134, overlap 1318130 1318128 CTAGGAAAACACAAA GCCCGG CCTCC CCGGGC TTTGGTGTAGTTAAT TERM 1815 1318134 - 1318150 + F 84 -10.8 -3.89302 | opp_overlap 1318134 1318130 1318128, overlap 1318129 1318128 CTAGGAAAACACAAA GCCCGG CCTCC CCGGGC TTTGGTGTAGTTAAT CJA_1121 1318239 - 1318709 + | putative outer membrane protein OmpH TERM 1816 1319500 - 1319468 - g 95 -9.9 -4.59773 | gap 1, overlap 1319470 CCGGATTGGCAAAAA CACCGCAATCGCCG GGCATA CGGCAATCGCGG-G CAGTACCCAAATCGG TERM 1817 1319499 - 1319470 - g 100 -13.6 -3.91506 | overlap 1319468 GGATTGGCAAAAACA CCGCAATCGCCG GGCATA CGGCAATCGCGG GCAGTACCCAAATCG TERM 1818 1319663 - 1319622 - g 100 -14.5 -3.98083 | gap 1 CATTCAATTGATAAA CCGGGTTCCTACTCATCGGG TAC CCCCATGAGTCAG-ACCCGG GAATGGCGGAAAAAC lpxD 1318728 - 1319753 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 1819 1320097 - 1320079 - g 71 -9.5 -3.53224 | opp_overlap 1320078 GATGTGCGCTTCAAA CGCCAGG TTGTT CCCGGCG ATCGTCTGCAGCTTG fabZ 1319788 - 1320225 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ lpxA 1320300 - 1321070 + | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase TERM 1820 1321532 - 1321553 + G 72 -8.1 -3.92592 | GGCAAAAGCGCATTA TCAACATTG CACG CAGTGTTGA TTTGATGTTGACACT TERM 1821 1322046 - 1322057 + G 74 -5.8 -4.55287 | GATTCTATCATGGCT GGTG AAAA CACC TTTTGTGTCCCTGCC lpx19A 1321138 - 1322292 + | lipid-A-disaccharide synthase, putative, lpx19A rnhB 1322289 - 1322903 + | ribonuclease HII TERM 1822 1324782 - 1324749 - g 78 -9.5 -3.88583 | overlap 1324738 1324739 1324750 1324752 TAAAGCGCGCAGAAA CTACCGCGGTGTTCC AGTT GGAATCCCGCGGTAT GAAAGATCTGATCAA TERM 1823 1324781 - 1324750 - g 82 -13 -2.92668 | overlap 1324738 1324739 1324749 1324752 AAAGCGCGCAGAAAC TACCGCGGTGTTCC AGTT GGAATCCCGCGGTA TGAAAGATCTGATCA TERM 1824 1324779 - 1324752 - g 72 -11.2 -3.01125 | overlap 1324738 1324739 1324750 1324749 AGCGCGCAGAAACTA CCGCGGTGTTCC AGTT GGAATCCCGCGG TATGAAAGATCTGAT TERM 1825 1325177 - 1325134 - g 70 -4.4 -4.57837 | overlap 1325135 1325166 AGAGGGCGCTAAAAA GCAGGGCGTTGATCCCGACC TGGC GATCAAGATCTTCGACCTGG TGGAAAAATTTGCCG dnaE 1322930 - 1326463 + | DNA polymerase III, alpha subunit CJA_1128 1326631 - 1327086 + | CBS domain protein accA 1327453 - 1328400 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 1826 1328431 - 1328445 + F 100 -8.5 -5.65177 | opp_overlap 1328431 CTCTTCACAAAAAAA CCGCC GTTAG GGCGG TTTTTTTATGGGTAT TERM 1827 1328445 - 1328431 - f 100 -8.5 -5.60993 | opp_overlap 1328431 CTCTTCACAAAAAAA CCGCC GTTAG GGCGG TTTTTTTATGGGTAT TERM 1828 1328492 - 1328467 - f 100 -16.2 -5.252 | TATGGGTATAAAAAA CGCCGCTGGA GGGGCA TCCAGCGGCG GCACAAGGCACTGGT CJA_1130 1328634 - 1328726 + | hypothetical protein lldD 1330025 - 1328865 - | L-lactate dehydrogenase TERM 1829 1329615 - 1329604 - G 72 -7.2 -4.20783 | opp_overlap 1329603 ATTTCATGCAAGAAA CCGC GGTC GCGG ATCATGTACAACTGA TERM 1830 1331005 - 1331024 + G 93 -10 -4.46926 | TTCTTTTATGTGGGT GCCCAGGT GTGT ATCTGGGC TTTTATGATCCGCTA fucP 1330234 - 1331544 + | L-fucose permease TERM 1831 1332073 - 1332057 - g 70 -6.5 -4.23213 | opp_overlap 1332048, overlap 1332053 GCGACAGGCAATAAA CAGGGGT TTA ACGCCTG GTGTGCAGCTATGGC TERM 1832 1332207 - 1332219 + G 74 -10.5 -3.21593 | opp_overlap 1332205, overlap 1332205 CTATTGGCCAACATT GGCGC AGA GCGCC TGTTGTGGGGCAGTG CJA_1133 1331541 - 1332419 + | Amidohydrolase family superfamily kdgR 1332517 - 1333341 + | transcriptional regulator kdgR TERM 1833 1333367 - 1333397 + F 100 -14.9 -4.72272 | opp_overlap 1333374, overlap 1333368 TCGTTAATCTTTGCC TGATAAAGCCGAC TTGAT GTCGGCTTTATCG TTTTTGGTGCAAACA TERM 1834 1333368 - 1333396 + F 100 -16.2 -3.43042 | opp_overlap 1333374, overlap 1333367 CGTTAATCTTTGCCT GATAAAGCCGAC TTGAT GTCGGCTTTATC GTTTTTGGTGCAAAC TERM 1835 1333390 - 1333374 - f 77 -9.4 -3.85698 | opp_overlap 1333368 1333367 TCTTTGCCTGATAAA GCCGAC TTGAT GTCGGC TTTATCGTTTTTGGT TERM 1836 1333859 - 1333880 + G 95 -11.5 -4.43844 | TGGTCCCCACCAGCT CCACGGCGC GGGA GCGCCATGG TTTTGTGGATGCTCC CJA_1135 1333537 - 1334649 + | D-threo-aldose 1-dehydrogenase-like protein CJA_1136 1334646 - 1334993 + | hydrolase, UxaA family TERM 1837 1335785 - 1335798 + G 70 -5.9 -4.21343 | opp_overlap 1335773 AAACCGGGTGATATT CCGCC GGCA GGTGG TTTGTATCTATTGGA uxaA 1334990 - 1336207 + | hydrolase, UxaA family TERM 1838 1336230 - 1336243 + F 79 -9.5 -3.73212 | overlap 1336228 GAGGGCCTTGTTCCC GCGCC AGCT GGCGC TCTCTTTTTTGGTTT TERM 1839 1336759 - 1336749 - g 72 -8.2 -3.72695 | opp_overlap 1336747 1336746 1336749 ATTGGTTTGACCAAA GCGG TTG CCGC TGATTTTGTCACTCA CJA_1138 1336281 - 1337009 + | oxidoreductase UCPA TERM 1840 1337307 - 1337319 + G 71 -10.5 -2.89797 | opp_overlap 1337293, overlap 1337305 TCGGGTATGCCGGTC CCGGC TGA GCCGG TGGTATTTATGAAGG CJA_1139 1337034 - 1337879 + | putative fumarylacetoacetate hydrolase family protein TERM 1841 1339573 - 1339558 - g 70 -6.8 -4.09685 | opp_overlap 1339571 TGGCACTGCTGAAAA CCCTGA AAGC CCAGGG GATTCCCGTTGTCTC TERM 1842 1340586 - 1340574 - g 79 -2.6 -5.26918 | opp_overlap 1340576 1340577, overlap 1340575 1340576 ATATTGGATAAAAAA GGCC AGGTA GACC TGCTGTTTATTGGTG cel3D 1337925 - 1341134 + | putative 1,4-beta-D-glucan glucohydrolase cel3D TERM 1843 1341153 - 1341196 + F 85 -14.2 -3.01791 | gap 1 GCTGCTTGTCCCTCG CTT-TCTCCATTCATCGATTG TTG TAATCGATGAATGGGGGCAAG TGTTCACAACACCCT TERM 1844 1341403 - 1341384 - f 73 -7.9 -4.07568 | TGGCCTTTGGGAAAA CACCATC ACTATG GATGGTG AGGGAGTGAAGCAAA TERM 1845 1341607 - 1341594 - g 87 -4.5 -5.19251 | opp_overlap 1341602, overlap 1341595 GAATATCAATAAAAA CGGCA TGCT TGCCA AGCAATGTATTACCC CJA_1141 1341418 - 1341909 + | hypothetical protein TERM 1846 1341965 - 1341952 - f 90 -9.5 -4.41047 | opp_overlap 1341952 AGCCTTGAACGAAAA GCCCC ACCC GGGGC TTTTTTCTTACTGGT TERM 1847 1341952 - 1341965 + F 100 -9.5 -5.52023 | opp_overlap 1341952 AGCCTTGAACGAAAA GCCCC ACCC GGGGC TTTTTTCTTACTGGT TERM 1848 1343062 - 1343038 - g 70 -6.4 -4.19817 | gap 1, opp_overlap 1343054 GGGACTCATTTAAAA GCCTGGTGCTG GACC CGGCAC-AGGC GAGCCTTTCTCCCAC TERM 1849 1343258 - 1343268 + G 72 -8.2 -3.71991 | overlap 1343256 AGAGGACTACCCCTT GGCG CGC CGCC TGTATTTTTATTTGC CJA_1142 1342050 - 1343780 + | OmpA family protein TERM 1850 1343802 - 1343827 + T 82 -3.1 -5.52384 | opp_overlap 1343797, overlap 1343804 GAGCAACTCACCCGG CAGGAGCGGCA AGGT TACCGCCCCTA TTTTTTTAATAGCCA TERM 1851 1343804 - 1343825 + T 72 -5.7 -4.40552 | opp_overlap 1343797, overlap 1343802 GCAACTCACCCGGCA GGAGCGGCA AGGT TACCGCCCC TATTTTTTTAATAGC CJA_1143 1344196 - 1343825 - | hypothetical protein TERM 1852 1344214 - 1344202 - R 74 -3.3 -4.93318 | GATAATCCACAAAAA CATCC TCG GGTTG TGGGAATCGATATTG purK 1345309 - 1344236 - | phosphoribosylaminoimidazole carboxylase, ATPase subunit purE 1345827 - 1345336 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit CJA_1146 1346947 - 1346009 - | sodium bicarbonate cotransporter TERM 1853 1346410 - 1346388 - G 70 -4.7 -4.55295 | GCCCCCAGAAATAAA GGCGCAATC TCCTT GCTGGCGCC AGGTCCGTAGAGATA TERM 1854 1347089 - 1347099 + G 72 -6.8 -4.2586 | CCACCTGACCTTTCG CCTG TTA CAGG TTTATATTGCTGTCG TERM 1855 1347894 - 1347919 + G 95 -11.1 -4.45577 | gap 1, overlap 1347895 GTGCGCCATAGCCAT CGGCGC-CTGCC TGT GGCAGCGCGCCA TTTTATCGAGTTTGT TERM 1856 1347895 - 1347918 + G 95 -14.6 -3.26262 | gap 1, overlap 1347894 TGCGCCATAGCCATC GGCGC-CTGCC TGT GGCAGCGCGCC ATTTTATCGAGTTTG rbcR 1347009 - 1348016 + | rubisco operon transcriptional regulator CJA_1148 1349100 - 1348030 - | apbE family protein TERM 1857 1349348 - 1349316 - g 70 -5.4 -4.3208 | opp_overlap 1349323 CCCTATAACCGAAAA CGCCTGACCCGTGA CCTGC TCGCGGGTTTGACG GTTGGGGTCATTGCT TERM 1858 1349601 - 1349611 + G 74 -8.2 -3.93556 | overlap 1349600 ATCATGGCGCTGCTG CGCC TGG GGCG TTTGATTGAATACAT sul1 1349232 - 1350959 + | sulfate permease family protein TERM 1859 1350960 - 1351013 + T 78 -6 -4.74103 | gap 1, overlap 1350961 1350962 AATGCCGCCGCCTAG TGTTATTCCGGCTCTGCCTCGCCAC CAAAC GCGGCGA-GCAGGGCGGTAATAAAG TTTTTCAATTCCAGG TERM 1860 1350962 - 1351011 + T 71 -10.8 -2.65906 | gap 1, overlap 1350961 1350960 TGCCGCCGCCTAGTG TTATTCCGGCTCTGCCTCGCCAC CAAAC GCGGCGA-GCAGGGCGGTAATAA AGTTTTTCAATTCCA rdgC 1351912 - 1350962 - | recombinaison associated protein TERM 1861 1351648 - 1351664 + g 82 -8 -4.57073 | opp_overlap 1351641, overlap 1351641 1351641 TGATCACACCGCTGG GCAGGA TTTTT TCCTGC TTTTTGGCACAGATC fklB 1352671 - 1352051 - | peptidylprolyl cis-trans isomerase CJA_1152 1353895 - 1352732 - | hypothetical protein TERM 1862 1353484 - 1353500 + g 91 -7.9 -5.10208 | ACTTGCCGCTGCTCA TGCCCAG GTC CAGGGCA TTTTTCTTGAGGTTA TERM 1863 1353873 - 1353883 + g 88 -2.4 -5.52023 | opp_overlap 1353873 AACAACAAAAAAGTA CGGG TTT CCAG TTTTTTATTCATAGT TERM 1864 1354744 - 1354705 - g 78 -8.4 -4.15044 | gap 1, overlap 1354710 TTTTTTGTGAACAAA CACAACCACAC-CCTGGCG CAA CGCCTGGAGCGCGGATGGG AGGTCATGCAGGCCA TERM 1865 1354739 - 1354710 - g 81 -9.9 -3.96841 | gap 1, overlap 1354705 TGTGAACAAACACAA CCACAC-CCTGGCG CAA CGCCTGGAGCGCGG ATGGGAGGTCATGCA TERM 1866 1354933 - 1354899 - g 100 -20.1 -2.72855 | overlap 1354889 CAAACCCTTGAAGGA CTGGCTTGCGCCAGG TCGGC CCTGGCCCAAGCCAG CTAAACCATAAGCGG CJA_1153 1353973 - 1354944 + | hypothetical protein TERM 1867 1355014 - 1355032 + T 71 -10.2 -2.74144 | opp_overlap 1355002, overlap 1355013 1355016 AAATCGCAACTGTTA CAGCCGCC ACA GGCGGATG GTTTCCCGCTAAACA feoB 1356984 - 1355128 - | ferrous iron transport protein B CJA_1155 1357341 - 1357033 - | ferrous iron transport protein TERM 1868 1358147 - 1358162 + G 71 -3.2 -4.86001 | overlap 1358146 ATATGGATACGGTTG CGGC CATTTACC GCCG TTTTTATCCACTGCT CJA_1156 1357591 - 1358439 + | hypothetical protein TERM 1869 1358484 - 1358499 + F 100 -10.4 -5.61689 | opp_overlap 1358484 GACCTATCTTAAAAA GCCAGC GACT GCTGGC TTTTTTGTTGCTTTT TERM 1870 1358499 - 1358484 - f 93 -10.4 -4.62783 | opp_overlap 1358484 GACCTATCTTAAAAA GCCAGC GACT GCTGGC TTTTTTGTTGCTTTT CJA_1157 1358777 - 1361404 + | TonB-dependent receptor TERM 1871 1361446 - 1361429 - f 100 -8.3 -5.31456 | opp_overlap 1361429 GGAACTGACAAAAAA GCCCGGC GACT GCTGGGC TTTTTTGTTTTAGTA TERM 1872 1361429 - 1361446 + F 100 -10.5 -5.83211 | opp_overlap 1361429 GGAACTGACAAAAAA GCCCGGC GACT GCTGGGC TTTTTTGTTTTAGTA TERM 1873 1361529 - 1361545 + G 73 -9.5 -3.61536 | overlap 1361536 GGCGGGACAGCAGGC TGGTTAG CGG CTAACCA TTTGGCCGTTGAGTT CJA_1159 1361484 - 1363013 + | tryptophan halogenase CJA_1158 1363630 - 1363010 - | hypothetical protein TERM 1874 1364011 - 1364038 + H 100 -15 -5.50499 | overlap 1364012 GTAGTAGTGGTCTTG TGGTTAGTGCTC TACG GAGCACTAACCG TTTTTTTGAATGTCC TERM 1875 1364012 - 1364037 + H 100 -16.3 -3.89215 | overlap 1364011 TAGTAGTGGTCTTGT GGTTAGTGCTC TACG GAGCACTAACC GTTTTTTTGAATGTC CJA_1160 1364143 - 1365066 + | BadF/BadG/BcrA/BcrD ATPase family superfamily TERM 1876 1365147 - 1365133 - f 74 -7.2 -4.32177 | CCATGTCAGAACAAA CATTAG AGC CTAATG CCACGACAGGAGCTA TERM 1877 1365212 - 1365236 + GF 71 -2.8 -4.8277 | overlap 1365214 CAGTCAGTCAATCGT GATACCCATG TTGAT CATTGGTACC TTGTTTTTTGTATTT TERM 1878 1365325 - 1365344 + GF 100 -13.6 -4.68724 | TGAATGAGTTCCAGG CGCTGCTG GTAG CAGCAGCG TTTTATATTGCCTAC TERM 1879 1365474 - 1365494 + GF 82 -2.6 -5.33026 | TTTATTCCCGCCGCC CAAACC ACTTATTAC GGTTTG TTTTTGTTTGCATTA TERM 1880 1365857 - 1365910 + GF 70 -10.4 -2.53164 | gap 1, opp_overlap 1365855, overlap 1365864 GTTGGATGACGAACC TGGCGAAGG-GCAGGATGCCGACCT GGATA AGTTCGGTGTTCTGCGCTTTCCCCA ATTAATCCTCGGTGC TERM 1881 1365920 - 1365935 + GF 71 -6.8 -4.04576 | TCCCCAATTAATCCT CGGTGC TCTG GCACTG TTTACTTATGTGGGT TERM 1882 1365986 - 1366009 + GF 72 -6 -4.43477 | gap 1, opp_overlap 1365976 CACTATCGGCCTGTA TGGCCAAAGCC TGG GGCTT-GCCCA TTTTGGTTCGCTCAC gluP 1365168 - 1366499 + | glucose/galactose transporter CJA_1162 1366462 - 1367661 + | hypothetical protein TERM 1883 1367845 - 1367855 + G 75 -4.6 -4.75472 | overlap 1367836 TTGCAGGGGGGAGTG CTGG CCC CCGG TTTTATTGATCTGCA TERM 1884 1367957 - 1367931 - g 72 -6.5 -4.37092 | overlap 1367933 ATCCGCCTTACAAAA CATGCTGGACG GCCAT CGCCCAACAGG CACTACTTCCATGTT nag9A 1367692 - 1368837 + | N-acetylhexosamine 6-phosphate deacetylase, putative, nag9A TERM 1885 1368867 - 1368854 - f 75 -6.7 -4.45168 | overlap 1368857 GCGTTAAAACACAAA CACTC ACTG GAGTG ATGCATGAAAGTTGT nagB 1368872 - 1369663 + | glucosamine-6-phosphate isomerase TERM 1886 1369703 - 1369675 - T 100 -16 -4.4017 | TTAATCTGCATAAAA CCCGCCCGGTTT TCGCC AAGCCGGGCGGG TGCCATCTACAACCA CJA_1165 1370933 - 1369848 - | transcriptional regulator, LacI family TERM 1887 1369958 - 1369978 + g 73 -9 -3.67878 | ACTCGATCAGCAGGG CCGTTGCC CGTTC GGCAATGG TTGTGTTGGGCTGCT TERM 1888 1371838 - 1371824 - g 84 -4.2 -5.30616 | TGATGCAAACAAAAA GCCACT GGT ACTGGC GCAAGGCTTTGCTGA TERM 1889 1372023 - 1372033 + G 70 -5.4 -4.43877 | GAACAGCGTGTGGTC TTGG TTC CCAA TTTCTTTAAGAATTC CJA_1166 1371204 - 1372073 + | periplasmic ATP/GTP-binding protein TERM 1890 1372089 - 1372123 + T 100 -18.8 -3.97834 | opp_overlap 1372089 1372092, overlap 1372092 1372121 TTTTTCCTCTGTAAA GAAGCCCCTGTTATTT TAT GGATAACAGGGGCTTC TTTATGCTCGGATTC TERM 1891 1372123 - 1372089 - T 100 -17.4 -3.53012 | opp_overlap 1372089 1372092 1372121, overlap 1372092 TTTTTCCTCTGTAAA GAAGCCCCTGTTAT TTTATGG ATAACAGGGGCTTC TTTATGCTCGGATTC TERM 1892 1372120 - 1372092 - T 95 -13.3 -3.90744 | opp_overlap 1372092 1372089, overlap 1372089 TTCCTCTGTAAAGAA GCCCCTGTTAT TTTATGG ATAACAGGGGC TTCTTTATGCTCGGA TERM 1893 1372092 - 1372120 + T 100 -14.7 -4.11183 | opp_overlap 1372089 1372092, overlap 1372089 TTCCTCTGTAAAGAA GCCCCTGTTATTT TAT GGATAACAGGGGC TTCTTTATGCTCGGA CJA_1167 1372462 - 1372145 - | hypothetical protein CJA_1168 1373739 - 1372480 - | RDD family domain protein TERM 1894 1372688 - 1372703 + g 70 -10.4 -3.14931 | CCCATAATCAATTTG CCCAGG GTTG CCTGGG TTGATGAACACTCAC TERM 1895 1372899 - 1372914 + g 73 -9 -3.67068 | CGTAGTAAAGGGTTT CCGGTT GCAG AACCGG TTTAGCCATTTTGAT TERM 1896 1373669 - 1373682 + g 76 -9.5 -3.83205 | opp_overlap 1373679 GTTGTTTTTAGCTTG CGCGC ATAA GCGCG TTTGATATCGCGGCT hscC 1375428 - 1373740 - | chaperone protein hscC TERM 1897 1373845 - 1373871 + g 71 -2.9 -4.83169 | overlap 1373846 GACTTGGTCAAAGTC GGCCAGCAGTT GCGCA ATTTGCTGGCG TTTTTCTCCCAGGCT TERM 1898 1374635 - 1374614 - G 76 -8.1 -4.24342 | gap 1, opp_overlap 1374614 GCGCGCAGTAATAAA GGTGTCACCA CCT TGGTGA-ACC ATGCCTCATCCGGCT TERM 1899 1375618 - 1375592 - H 70 -10 -3.01712 | opp_overlap 1375614 CCCTGGCCGCTAACA GCGCAGGGGCTC TTG AAGCCCCGGCGA CTCTGCCTATACTCA TERM 1900 1375690 - 1375672 - H 70 -2.3 -5.00616 | opp_overlap 1375674 1375684, overlap 1375674 GTGTTGTGCAAAAAA CAGGCGA TTTTG CCGCCTT TTTCGATAAATAGCC TERM 1901 1375920 - 1375905 - g 71 -9 -3.55801 | ATCAATGTCGTCAAA TCAGCG GGGG CGCTGA TGACCCCTTCCAAAT motA1 1375728 - 1376585 + | chemotaxis motA protein TERM 1902 1377449 - 1377439 - g 71 -2.4 -5.00884 | ATTGTGCTGAAAAAA GCGG TTG CCGA TGCGCTGGGTTCCGG motB 1376599 - 1377600 + | chemotaxis protein MotB TERM 1903 1377609 - 1377624 + F 100 -10.4 -5.49234 | opp_overlap 1377609 GCCATAACTCTGAAA CCCGAC AGTC GTCGGG TTTTTTATTCAATGT TERM 1904 1377624 - 1377609 - f 79 -10.4 -3.62591 | opp_overlap 1377609 GCCATAACTCTGAAA CCCGAC AGTC GTCGGG TTTTTTATTCAATGT CJA_1172 1377735 - 1378277 + | hypothetical protein TERM 1905 1378346 - 1378294 - T 100 -17.4 -3.8211 | gap 1, opp_overlap 1378311, overlap 1378295 1378311 TGGCAGCTACAACAA TTGTTACCCAATAAAAAGGGCTGGT ATTA ACCAGCCCTTTTTATTGGGTGT-AA CCGGAGCATTTAGTG TERM 1906 1378346 - 1378295 - T 100 -19 -2.88945 | opp_overlap 1378311, overlap 1378294 1378311 GGCAGCTACAACAAT TGTTACCCAATAAAAAGGGCTGGT ATTA ACCAGCCCTTTTTATTGGGTGTAA CCGGAGCATTTAGTG TERM 1907 1378330 - 1378311 - T 100 -13.6 -5.10461 | opp_overlap 1378311, overlap 1378294 1378295 GTTACCCAATAAAAA GGGCTGGT ATTA ACCAGCCC TTTTTATTGGGTGTA TERM 1908 1378311 - 1378330 + T 100 -13.6 -5.12068 | opp_overlap 1378311 1378294 1378295 GTTACCCAATAAAAA GGGCTGGT ATTA ACCAGCCC TTTTTATTGGGTGTA CJA_1173 1380089 - 1378356 - | transporter, monovalent cation:proton antiporter-2 (CPA2) family TERM 1909 1378943 - 1378928 - G 70 -4.6 -4.57569 | overlap 1378930 CGAGTGTGGCAAAAA GTGCTG AGTT CAGCGC GATCGATGCCAGGGC TERM 1910 1379158 - 1379144 - G 74 -7.8 -4.05193 | TACCAAACATAATAA TCGCCA CAA CGGCGA GCACTTTCAGGGGAT CJA_1174 1382341 - 1380317 - | von Willebrand factor type A domain protein TERM 1911 1381212 - 1381224 + g 79 -4.1 -5.09225 | AGGTTATGTAAGGCC GCAAG GAT TTTGC TTTTTTCCCTGACCT TERM 1912 1382308 - 1382320 + g 75 -5.5 -4.64598 | TGAGAGTAGCCAGCT CGTCC AAT GGATG TTTTTCAGGTGATTG CJA_1175 1382883 - 1382338 - | RNA polymerase sigma-24 factor CJA_1176 1384919 - 1382964 - | transglutaminase-like domain protein TERM 1913 1383716 - 1383693 - G 70 -6.8 -4.08692 | gap 1 GAAGTGTTCGCAAAA TCCCTGTTTCG TAT CGAA-CAGGAA CTCATCAACGCTGTG TERM 1914 1384710 - 1384700 - G 86 -6.8 -4.90296 | AAAAGCTGATAAAAA TGCC CAG GGCA CAGAGACCGATCACA CJA_1177 1385908 - 1384916 - | hypothetical protein TERM 1915 1385875 - 1385850 - G 100 -6.7 -5.47821 | overlap 1385852 ACCCAGGTAAAAAAA CGGCGGCGCCA GTAC TGGCGCCAATG ACTAAGGCGGGTAGT CJA_1178 1386827 - 1385913 - | MoxR protein TERM 1916 1386099 - 1386063 - G 86 -14.3 -2.91264 | GCGGTGATGGATATA GGCCCAGGCCTTGGCGG CTC CCACCAATGCCAGGGCG CCGCGCGGGGACAAG CJA_1179 1388138 - 1386879 - | putative Capsule biosynthesis protein capA TERM 1917 1387932 - 1387952 + g 81 -4.6 -5.0538 | gap 1, overlap 1387933 GTTGCCCCAACCCTG CCGAGCCGC TTCA GCGGC-CGA TTTTTTGACATCGCC CJA_1180 1389239 - 1388262 - | GGDEF domain protein TERM 1918 1389869 - 1389834 - g 70 -11.1 -2.80816 | gap 1 CTGGTATTTATTACA GCCTGGGGGTGCATCC CTGTT GGTTG-ACCCCCTGGC ACAATACCCCGGTGG TERM 1919 1390124 - 1390138 + G 88 -11.4 -3.73402 | AAGCCTGTAGCCGGT GGCGTG GTA CACGCC TTTAATGGCAGCTAT TERM 1920 1390329 - 1390281 - g 74 -10.1 -3.53012 | overlap 1390285 CCCTGGTGCTGGAAA CCGATGCGCCGGATATGCCGC TGCAGGG GCGGCAAGGCCAGCGCAACAG TCCGGTGTTTTTAAC CJA_1183 1389656 - 1390459 + | Mg-dependent DNase chi18A 1391754 - 1390456 - | endo-chitinase, putative, chi18A TERM 1921 1391229 - 1391255 + g 74 -10.1 -3.53012 | gap 1, opp_overlap 1391216 1391244, overlap 1391229 AAGCCTGGCGATTCT CC-GCGCTGCCG AACA CGGCAGAGCAGG TTTCACAGCCGCCCC TERM 1922 1391553 - 1391573 + g 79 -9.7 -3.7732 | GGTCATCGTGGTTAG CCTGTGTTG ATG CAACACTGG TTGTTGATGTGAAGG CJA_1184 1391932 - 1392342 + | hypothetical protein CJA_1185 1393220 - 1392387 - | ThiF family protein TERM 1923 1392898 - 1392936 + g 72 -4.5 -4.62069 | gap 1, overlap 1392899 1392904 CAGTGAAGGCGTATG TCAGGATTGATGTCGCGC AAGC GCGCGGCAATCA-CCTGG TTTTTGGACTGCCCG TERM 1924 1393265 - 1393277 + H 71 -6.9 -4.08767 | GGTGGCCAAACTAGC CGTGC GGC GCGCG TTTTAACCAACTCAG CJA_1186 1393421 - 1394050 + | Response regulator receiver domain protein CJA_1187 1394352 - 1396067 + | methyl-accepting chemotaxis protein CJA_1188 1396111 - 1396974 + | chemotaxis protein methyltransferase CheR TERM 1925 1397468 - 1397447 - gf 76 -5 -4.87803 | CATCCGCAAACAAAA CCGGTCGC TCAGCC GCGGCCAG CTCCCGGGTCGGATC CJA_1189 1396988 - 1398289 + | response regulator TERM 1926 1398385 - 1398369 - gT 85 -2.9 -5.36441 | opp_overlap 1398372, overlap 1398376 GCGCCATATAAAAAA CAACCAG CAA CAGGTTA TTGGCGAACACCTGC TERM 1927 1398761 - 1398788 + GT 84 -10.5 -3.73402 | gap 1 CCTATGCCATGGAGG GGCCCCGC-GGC CACAA GCCTGCGGGGAC TTTGATCCAGAATAT TERM 1928 1400972 - 1400956 - gT 71 -10.1 -3.15758 | opp_overlap 1400956 1400955 1400958, overlap 1400959 ACAAGGCCTCATCAA CAAGGCG CGT CGCCCTG GTTGATTCGCCCCGG TERM 1929 1400969 - 1400959 - gT 72 -8.2 -3.72027 | opp_overlap 1400958 1400956 1400955, overlap 1400956 AGGCCTCATCAACAA GGCG CGT CGCC CTGGTTGATTCGCCC CJA_1190 1398244 - 1401429 + | Response regulator receiver domain protein cbp6A 1403044 - 1401461 - | carbohydrate binding protein, putative, cbp6A TERM 1930 1402129 - 1402103 - G 72 -8.6 -3.75153 | CTCCTGGAACGCAAA GCTGCCACCACC ACT GGTGCTGGCCAC GCGATAGGTAATTTT TERM 1931 1402233 - 1402245 + g 82 -3.3 -5.22039 | ACGTTCAAGCCACCG CCGGT ATC GCTGG TTTTTTCAGTTTGCA CJA_1192 1404773 - 1403370 - | transcriptional regulator, GntR family/aminotransferase class-I TERM 1932 1403485 - 1403501 + g 72 -4.4 -4.62069 | gap 1, opp_overlap 1403477 GAAAACAGCGGGCCC GGCG-CA ATAC TGACGCC TTTTTGCAGTGCACG TERM 1933 1403642 - 1403610 - G 91 -12.2 -3.72576 | opp_overlap 1403600 GGTCTCGGCAGGAAA GTAGCGCGTAATG-GC TTC GCTCAT-ACGCGCTAC GGCACTGGCGTAGGT CJA_1193 1405039 - 1405635 + | transporter, LysE family CJA_1194 1406554 - 1405703 - | DGPF domain family TERM 1934 1405841 - 1405810 - G 100 -18.8 -3.27994 | overlap 1405811 TCAAGGGCATATCAA CCTTGCCGCCCTGG CTGG CCAGGGCGGCAAAA ATACGCTCAGCTTCA TERM 1935 1405840 - 1405811 - G 100 -20.1 -2.56475 | overlap 1405810 CAAGGGCATATCAAC CTTGCCGCCCTGG CTGG CCAGGGCGGCAAA AATACGCTCAGCTTC TERM 1936 1405946 - 1405933 - G 81 -6.7 -4.65895 | CGTCCGATGCAAAAA TGGCA ATAT TGCCA ATACCGATTTCAGCG TERM 1937 1407497 - 1407480 - g 71 -2.7 -4.78764 | gap 1 CAAAGCGATGAAAAA CCTGCGCT TGT AGC-CAAG ACTGATCAGCAAGGG CJA_1195 1406766 - 1407647 + | hypothetical protein CJA_1196 1407651 - 1408598 + | EF hand domain protein TERM 1938 1408663 - 1408687 + F 100 -9.4 -5.49729 | gap 1, opp_overlap 1408663 1408662 1408660 GCCAGGGAATAACAC TCCCCCTCTCA GTAA TGA-AGGGGGA TTTTTTTGGCTCATT TERM 1939 1409699 - 1409682 - g 72 -5.5 -4.4767 | CCACCGATGATAAAA CAGAGCG TGAA CGCTATG GGGTGAATTATTTAT TERM 1940 1410741 - 1410731 - g 77 -3.2 -5.10208 | GAAGGTGAAGAAAAA GATG GAA CACC GCTACAAAGTATTGT TERM 1941 1410873 - 1410853 - g 79 -4.8 -4.98255 | gap 1, opp_overlap 1410851 1410853 TGGCAAGGATAAAAA GGATGCAAC AGCG GTTG-ATCC TGTTAATTTCACCCA hupA 1408772 - 1411150 + | hypothetical heme receptor TERM 1942 1411196 - 1411171 - T 93 -10.6 -4.66163 | opp_overlap 1411171 1411177, overlap 1411177 ACCTTCAGGTAAAAA GTAAAAGGTC TGTGAG GACCTTTTAC TTTTGCGGTCGATAA TERM 1943 1411171 - 1411196 + T 89 -11.3 -4.14739 | opp_overlap 1411171 1411177, overlap 1411177 ACCTTCAGGTAAAAA GTAAAAGGTCT GTGA GGACCTTTTAC TTTTGCGGTCGATAA TERM 1944 1411190 - 1411177 - T 71 -3.8 -4.78661 | opp_overlap 1411171 1411177, overlap 1411171 AGGTAAAAAGTAAAA GGTC TGTGAG GACC TTTTACTTTTGCGGT TERM 1945 1411295 - 1411316 + T 80 -5.7 -5.0133 | opp_overlap 1411295, overlap 1411297 1411312 CTTTTATCAACCGAA GCGACGCAG GGTT CAGCGTCCC TTTTTTCAGGGGCTG azu 1411781 - 1411332 - | azurin CJA_1199 1413143 - 1412145 - | 2-nitropropane dioxygenase TERM 1946 1412378 - 1412388 + g 80 -5.4 -5.00616 | GGTGGGTGGCAGTTT CAGT GAT ACTG TTTTTTAGCACGCGA CJA_1200 1413479 - 1413153 - | hypothetical protein TERM 1947 1413936 - 1413924 - g 73 -9.1 -3.64703 | opp_overlap 1413922, overlap 1413903 CTTGCCCGAGGCAAA GACGG ATA CCGTC GCTATTGGCGGAGAG TERM 1948 1414231 - 1414219 - g 90 -7.7 -4.7373 | opp_overlap 1414219 1414217 CCAGCTTACGAAAAA CAGCA TGA TGCTG TATTTCCTGGTAAAC CJA_1201 1413661 - 1414500 + | transcriptional regulator, LysR family CJA_1202 1414689 - 1415042 + | hypothetical protein CJA_1203 1415191 - 1416354 + | GGDEF domain protein TERM 1949 1416635 - 1416619 - f 91 -6.5 -5.4833 | opp_overlap 1416619 GCAGGCAATAAAAAA CCCGC GTGGTTA GCGGG TTTCAGGACTATCTT CJA_1204 1416656 - 1416763 + | hypothetical protein TERM 1950 1416796 - 1416814 + G 73 -11.6 -2.81768 | overlap 1416795 TCAAGCGATACCGCA ACGCCGCC ATT GGCGGCGG ATTTCCGTGCTGTGG TERM 1951 1417011 - 1416977 - g 79 -12.8 -3.01712 | opp_overlap 1416978 1417009 CCCGGCTGTTCAATA CGGCCACCGCTCCC CGTAAGC GGGAGCGACGGCCT GTTAAGGATTATCAG TERM 1952 1416978 - 1417010 + G 75 -11.9 -3.07233 | opp_overlap 1416977, overlap 1417009 CCGGCTGTTCAATAC GGCCACCGCTCCC CGTAAGC GGGAGCGACGGCC TGTTAAGGATTATCA CJA_1205 1416772 - 1417227 + | hypothetical protein TERM 1953 1417510 - 1417488 - g 91 -7.7 -5.12068 | gap 1, opp_overlap 1417494 1417502, overlap 1417489 1417490 GACATTGAACAAAAA CTGGGACTGG ACGG CCAGCCCC-G TGCGGTGGTGTTCCA TERM 1954 1417509 - 1417490 - g 73 -11.4 -2.78609 | opp_overlap 1417494 1417502, overlap 1417488 1417489 CATTGAACAAAAACT GGGACTGG ACGG CCAGCCCC GTGCGGTGGTGTTCC TERM 1955 1417853 - 1417870 + G 75 -6.9 -4.38712 | opp_overlap 1417836, overlap 1417859 1417862 GGGCTACACGCTGGC CCGTGGC GACC GTCGCGG TTTTGTGGCGGTGGA CJA_1206 1417329 - 1418537 + | hypothetical protein CJA_1207 1419431 - 1418589 - | Domain of unknown function (DUF955) family sinR 1419736 - 1419413 - | Helix-turn-helix motif TERM 1956 1420142 - 1420107 - R 79 -9.8 -3.74747 | opp_overlap 1420113, overlap 1420113 TTAAGCGTCATCAAA TCATAATACCCTTCCC GTGA GGGAGGGGTATTCTAA CAAAAAGGTACTTTG TERM 1957 1420136 - 1420113 - R 82 -11 -3.62849 | opp_overlap 1420113, overlap 1420107 GTCATCAAATCATAA TACCCTTCCC GTGA GGGAGGGGTA TTCTAACAAAAAGGT TERM 1958 1420113 - 1420136 + r 83 -13.2 -3.28791 | opp_overlap 1420107 1420113 GTCATCAAATCATAA TACCCTTCCC GTGA GGGAGGGGTA TTCTAACAAAAAGGT CJA_1209 1421408 - 1420449 - | hypothetical protein TERM 1959 1421425 - 1421443 + r 78 -6.7 -4.66537 | ATTGAATGTTCCAGT CTTTGGC GGCAG GCCAGAG TTTTATATTGAGGGC CJA_1210 1422133 - 1421408 - | hypothetical protein TERM 1960 1422091 - 1422079 - G 71 -9.1 -3.43773 | overlap 1422040 1422077 CCTGATACCCAAAGA CCTGC CCA GCAGG CATGTCGCTGACACG TERM 1961 1422206 - 1422177 - R 73 -9.5 -3.36878 | TCCACCTATCCATAA TGTCAAGTTTTTA ATGA TAAAAACATGACA TATAGACCGAATAAT TERM 1962 1422580 - 1422596 + r 100 -15.1 -3.53563 | opp_overlap 1422580, overlap 1422593 AGGGGGTATCCAACA GGGGGCG GCA CGCCCCC TTTGGCAAGAGGTGT TERM 1963 1422596 - 1422580 - R 93 -15.1 -3.08798 | opp_overlap 1422580 1422593 AGGGGGTATCCAACA GGGGGCG GCA CGCCCCC TTTGGCAAGAGGTGT CJA_1211 1423277 - 1422675 - | Fic family protein TERM 1964 1422804 - 1422821 + g 70 -4.1 -4.72272 | ACCACCAGCCCAGTC TATCGCC GGAT GGCCATA TTTTTCATGGAGAAC CJA_1212 1423738 - 1423277 - | DNA-binding protein CJA_1213 1424045 - 1424395 + | hypothetical protein CJA_1214 1424392 - 1424712 + | hypothetical protein CJA_1215 1424952 - 1424848 - | hypothetical protein TERM 1965 1425198 - 1425184 - gR 77 -2.8 -5.05113 | TTGATAGAAATAAAA TCGC TCCTTTG GCGA TCGCTAAAGTCACAT TERM 1966 1425778 - 1425795 + Gr 73 -3.5 -4.79955 | overlap 1425780 CGTCTAAAGTCAGAA TTTTCTT TAGC AAGAAGA TTTTATTATGAGTAT TERM 1967 1425911 - 1425900 - gR 77 -5.8 -4.6645 | opp_overlap 1425900 CATAGACATAGAAAA GCTG CGCA CAGC TTTCAGGCTTTGTTT CJA_1216 1424812 - 1426395 + | hypothetical protein TERM 1968 1426420 - 1426402 - TR 100 -17.4 -3.39884 | AAAGATTAGTTACAA GGCGGGGC ATT GCCCCGCC TCACGGGTGGGGCTG TERM 1969 1426500 - 1426469 - TR 100 -15.2 -4.03413 | opp_overlap 1426475, overlap 1426475 AGGGGCGCACAGAAA CGAAAAGCACCGGG GTGG CCCGGTGCTTTCTG CTATCTGGAGCCAGA TERM 1970 1426494 - 1426475 - TR 100 -15 -4.65153 | opp_overlap 1426475, overlap 1426469 GCACAGAAACGAAAA GCACCGGG GTGG CCCGGTGC TTTCTGCTATCTGGA TERM 1971 1426475 - 1426494 + Tr 100 -15 -4.04318 | opp_overlap 1426475 1426469 GCACAGAAACGAAAA GCACCGGG GTGG CCCGGTGC TTTCTGCTATCTGGA CJA_1217 1427301 - 1426516 - | antirestriction protein family protein TERM 1972 1427153 - 1427132 - G 83 -6.5 -4.98758 | gap 1, opp_overlap 1427139, overlap 1427133 1427134 AAAAATCCAGAAAAA TCGCGGAGGC TCC GCC-CAGCGA AGCGACCGGGTGGAA TERM 1973 1427291 - 1427311 + g 81 -11.1 -3.57263 | GCGCATAGAGCCTGT TCCGGCTGC ATA GCAGACGGA TTTGCCGATACAAAT CJA_1218 1427662 - 1428855 + | putative lipoprotein CJA_1221 1428982 - 1430571 + | hypothetical protein TERM 1974 1430649 - 1430670 + F 74 -8.7 -3.86897 | opp_overlap 1430649 1430648 GACGACTTTAGCAAT GGCGGCA TTTTTGTT TGCCGCC TTTATCCCGGCTGCG TERM 1975 1430932 - 1430911 - f 85 -6.5 -5.1361 | opp_overlap 1430911 1430914, overlap 1430914 ATAAATCTGAAAAAA GAACCAGCC ATTC GGCTAGATC TTCTTAGAGAAAAGT TERM 1976 1430929 - 1430914 - f 80 -6.8 -4.63993 | opp_overlap 1430911 1430914, overlap 1430911 AATCTGAAAAAAGAA CCAGCC ATTC GGCTAG ATCTTCTTAGAGAAA TERM 1977 1431936 - 1431957 + F 76 -11.6 -2.57931 | opp_overlap 1431935, overlap 1431935 GACGGCTTTAGCAAT GGCGGCAA TTTTTT TTGCCGCC CTTATCCCGACTGCA TERM 1978 1432534 - 1432518 - g 70 -4.5 -4.57837 | AGAGCTTTGGAAAAA TAACATT TTT AACGTTA TTCGAAAAATTTCTG CJA_1222 1432495 - 1432833 + | hypothetical protein TERM 1979 1433002 - 1433013 + T 70 -2.2 -5.0538 | opp_overlap 1433002 1433003 1433004, overlap 1432999 1433003 TTTTTAGGAGAAAAA TGGT GAAT GCCA TTTTTTGAAATGGCA TERM 1980 1433034 - 1433002 - T 100 -11.6 -4.91109 | gap 1, opp_overlap 1432999 1433002 1433003, overlap 1433003 1433004 TTTTTAGGAGAAAAA TGGTGAATGCCATTT TTTG AAATGGCATTCAC-A CTCATTAGCTGTGAT TERM 1981 1433034 - 1433003 - T 90 -13.2 -3.54183 | opp_overlap 1433002 1433003 1432999, overlap 1433002 1433004 TTTTAGGAGAAAAAT GGTGAATGCCATTT TTTG AAATGGCATTCACA CTCATTAGCTGTGAT TERM 1982 1433003 - 1433035 + T 82 -13 -2.77658 | gap 1, opp_overlap 1433002 1433003 1433004, overlap 1433002 1432999 TTTTAGGAGAAAAAT G-GTGAATGCCATTT TTTG AAATGGCATTCACAC TCATTAGCTGTGATG TERM 1983 1433033 - 1433004 - T 95 -16.7 -2.72028 | opp_overlap 1433002 1433003 1432999, overlap 1433002 1433003 TTTAGGAGAAAAATG GTGAATGCCATTT TTTG AAATGGCATTCAC ACTCATTAGCTGTGA CJA_1223 1433621 - 1433052 - | hypothetical protein TERM 1984 1433537 - 1433559 + g 85 -9.8 -4.27316 | overlap 1433513 CGGTGGGCGCTATGG CGTTGCTGCA CTC TGCGGCGGCG TTTTGGGTTACGGCC CJA_1224 1434676 - 1433681 - | putative lipoprotein TERM 1985 1434325 - 1434359 + g 100 -17.2 -2.62184 | CCCCGCCGCCTGTTT TGGTGAGGGTGGCTGC ATC GCGGCCATGCTCACCA TCCTGTCCGGGGAAG CJA_1225 1435287 - 1434904 - | hypothetical protein TERM 1986 1434975 - 1434953 - G 89 -13.4 -3.28712 | CTGTTTCTGGCACAA GTGCAGCCGA CCA TCGGCTGCTC ACTCGATGCAGTGAA TERM 1987 1435784 - 1435727 - g 85 -11.7 -3.60431 | gap 1, overlap 1435719 1435717 AAAATGACCGGTAAA GC-CGGATCGCGCCCGGAGCTGACCCGG CTG CTGGGGCAGCTTCGGGCGGGTGACGTGC TGGTGGTGTGGAAGC CJA_1226 1435613 - 1436203 + | invertase/recombinase like protein TERM 1988 1436227 - 1436254 + TF 70 -5 -4.43272 | opp_overlap 1436227 GCACATAATAATCTA GACCATAAAG CTATTTGT TTTTATGGTC TTTTAGCTTTTCAAT CJA_1227 1438161 - 1436590 - | putative lipoprotein CJA_1228 1437449 - 1437568 + | hypothetical protein CJA_1229 1437920 - 1438120 + | hypothetical protein TERM 1989 1438228 - 1438197 - TR 76 -8.8 -3.75115 | opp_overlap 1438196, overlap 1438193 1438199 GTTTCATAAAATTAA TATGACTCTGCATT TGTA AAGGCAGAGTCATC ACTATATAAAACAGA TERM 1990 1438226 - 1438199 - TR 79 -11.4 -3.45405 | opp_overlap 1438196, overlap 1438197 1438193 TTCATAAAATTAATA TGACTCTGCATT TGTA AAGGCAGAGTCA TCACTATATAAAACA CJA_1230 1439028 - 1438312 - | putative two-component transcriptional regulator, LuxR family CJA_1231 1439621 - 1439118 - | hypothetical protein TERM 1991 1439393 - 1439415 + g 70 -10.6 -2.77701 | overlap 1439391 1439389 GGGTGGTGCGGTATT CCTCGATGGA GGC TCCGTTGAGG TAATGTTCGTAGGCT TERM 1992 1439580 - 1439567 - G 71 -9.5 -3.53012 | opp_overlap 1439560 TGGTCTGGCGGGAAA CGCCC GTTT GGGCG GCAGTTTCCTTGGGC CJA_1232 1439836 - 1440132 + | hypothetical protein TERM 1993 1441097 - 1441113 + G 73 -9.3 -3.67296 | opp_overlap 1441096 TTCTGGTGGATGAAG CCGCCAC GCT GGGGCGG TTTGAATCCCTGCTC CJA_1233 1440148 - 1441833 + | TraG/TraD family TERM 1994 1442123 - 1442143 + G 71 -9.1 -3.53012 | opp_overlap 1442120, overlap 1442120 TATCGAAAAATACCG TCAAGACCT TGA AGGTTTTGA TTTAACCGACGAACA CJA_1234 1442019 - 1442360 + | hypothetical protein TERM 1995 1442528 - 1442516 - g 72 -7.7 -3.99324 | overlap 1442519 TTTCAGGATGATAAA TCAGG CAG CCTGA TTGACCGCCCCGGCA TERM 1996 1442536 - 1442560 + G 95 -13.6 -3.35775 | opp_overlap 1442519, overlap 1442534 CAGCCTGATTGACCG CCCCGGCATG AAAGC CATGCTGGGG TATTTAAGCCGTCAT ccrB 1442357 - 1443934 + | Site-specific recombinase CJA_1237 1445054 - 1444359 - | putative branched-chain amino acid transport protein (ABC superfamily, ATP_bind) TERM 1997 1444658 - 1444676 + g 70 -6.6 -4.14598 | opp_overlap 1444660, overlap 1444654 1444660 1444661 GCTGGCCGCCGGAGA GATCGCCG CCA CGGCGGTA TTTCATTTCCTTAAG TERM 1998 1444660 - 1444674 + g 73 -9.2 -3.66148 | opp_overlap 1444660, overlap 1444658 1444654 1444661 TGGCCGCCGGAGAGA TCGCCG CCA CGGCGG TATTTCATTTCCTTA TERM 1999 1444661 - 1444673 + g 70 -10.5 -2.78604 | opp_overlap 1444660, overlap 1444660 1444658 1444654 GGCCGCCGGAGAGAT CGCCG CCA CGGCG GTATTTCATTTCCTT CJA_1238 1445870 - 1445058 - | branched-chain amino acid ABC transporter, ATP-binding protein CJA_1239 1447025 - 1445874 - | possible permease of ABC transporter CJA_1240 1448800 - 1447046 - | Branched-chain amino acid transport system / permease component domain protein TERM 2000 1447686 - 1447673 - G 78 -5.2 -4.82901 | GCGTCCGTATAAAAA GCGG ATGACG CCGC GCTCAATCGCGATAC CJA_1241 1450189 - 1448891 - | ABC transporter, substrate-binding protein TERM 2001 1449256 - 1449269 + g 75 -5.3 -4.7254 | CCATGGGGTCGTTGG TGACA CGCT TGTCA TTTTTGATAAAGGAT gntR 1451075 - 1450356 - | GntR-family transcriptional regulator TERM 2002 1450831 - 1450819 - G 70 -4.9 -4.44974 | TCAAATTTCATAAAA TCAAA CGG TTTGA CTTGCCACCCGCTGC CJA_1243 1454743 - 1451105 - | urea amidolyase TERM 2003 1452828 - 1452795 - G 71 -2.3 -5.00616 | gap 1, opp_overlap 1452795 1452797, overlap 1452796 1452797 TCGGGTTTGAAAAAA TCCG-GTGCGCCGTGG GGG CCATAGAGCACACCGA TTTCCCATTCGCTTA TERM 2004 1452896 - 1452878 - G 100 -14.6 -3.38584 | opp_overlap 1452877 1452876 ACAGGAGGGAATTAA TGCTGCGG GTA CCGCAGCA GGTTCGTATACCGGT TERM 2005 1453068 - 1453050 - G 77 -10.2 -3.57971 | overlap 1453051 ACAGGCACGTCGAAA CCCTGGCG CAC CGCCAGGT AGCCGCGACAGCCGT TERM 2006 1453067 - 1453051 - G 85 -13.7 -2.74461 | overlap 1453050 CAGGCACGTCGAAAC CCTGGCG CAC CGCCAGG TAGCCGCGACAGCCG CJA_1244 1456666 - 1454861 - | urea amidolyase TERM 2007 1456285 - 1456251 - G 78 -8.6 -4.17048 | overlap 1456252 TCTGCCTTAAAAGAA TTGGGCACAGCGC-CG TAAGG CGAGCGC-GTGCCCAC AAGGCCAGTAGCAAA TERM 2008 1456284 - 1456252 - G 79 -12.1 -3.09908 | overlap 1456251 CTGCCTTAAAAGAAT TGGGCACAGCGC-CG TAAGG CGAGCGC-GTGCCCA CAAGGCCAGTAGCAA TERM 2009 1457304 - 1457290 - g 77 -2.8 -5.08824 | overlap 1457296 CGGCTATTCAAAAAA CAAAGA CAC TCGTTG ATCAAGCGACTACAA TERM 2010 1457487 - 1457473 - g 75 -5.6 -4.59919 | overlap 1457474 AAATGATAAAAAGAA GGCGTG AGC CACGCA CTATGGACGAACGCA TERM 2011 1457641 - 1457615 - g 77 -12.5 -2.7035 | opp_overlap 1457614 1457622, overlap 1457612 1457622 GGCAGGGATAGATGA CGAAAAATACC GGCCT GGTATTTTTCG CTCTGCTGATAATGT TERM 2012 1457622 - 1457634 + G 70 -4.1 -4.7173 | opp_overlap 1457622 1457615 1457612, overlap 1457614 ATAGATGACGAAAAA TACCG GCC TGGTA TTTTTCGCTCTGCTG TERM 2013 1457634 - 1457622 - g 71 -3.4 -4.79826 | opp_overlap 1457614 1457622, overlap 1457615 1457612 ATAGATGACGAAAAA TACC GGCCT GGTA TTTTTCGCTCTGCTG CJA_1245 1456998 - 1458365 + | Fic family protein TERM 2014 1458362 - 1458349 - f 72 -8.1 -3.72315 | overlap 1458347 ACGATATTCAAAATA GCTGG ACTG CCAGC TGATCCAAAGGAATT TERM 2015 1458790 - 1458776 - g 72 -5.6 -4.57341 | opp_overlap 1458778, overlap 1458778 AACTGGTTCCAAAAA GAGGGC GCT GCCTTC CTGCGCGACCTTTCA CJA_1246 1458383 - 1459750 + | deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) (dGTP triphosphohydrolase) TERM 2016 1460292 - 1460306 + G 82 -9.2 -4.21462 | ACAGGCGCGCACATT CCCGCT TCT GGCGGG TTTTGAGTCATCCCT CJA_1248 1459831 - 1460751 + | hypothetical protein TERM 2017 1460851 - 1460821 - T 81 -5.3 -5.1101 | overlap 1460822 1460824 CTATGAGGCAAAAAA TTAGCCCCCAGGC TCTTC ACCTGAGGGCTGG AATGTGAGTGACTTG TERM 2018 1460850 - 1460822 - T 76 -8.8 -3.65883 | overlap 1460821 1460824 TATGAGGCAAAAAAT TAGCCCCCAGGC TCTTC ACCTGAGGGCTG GAATGTGAGTGACTT TERM 2019 1460848 - 1460824 - T 79 -11.4 -3.39842 | overlap 1460822 1460821 TGAGGCAAAAAATTA GCCCCCAGGC TCTTC ACCTGAGGGC TGGAATGTGAGTGAC CJA_1249 1461096 - 1460893 - | hypothetical protein TERM 2020 1461328 - 1461316 - g 70 -6.3 -4.28188 | GAGCGAGAAGATAAA TGTTG AGC CAACA ACAACCGGATATTAT CJA_1250 1461315 - 1461782 + | possible ribosomal protein S6 modification protein CJA_1251 1461814 - 1462719 + | ribosomal protein S6 modification protein TERM 2021 1463153 - 1463171 + G 77 -8.8 -4.09864 | overlap 1463168 ATGTACCGGTATACG TACACCGG CAA CCGGTGGA TTTTCGCAAATCCAT CJA_1252 1463092 - 1463298 + | hypothetical protein CJA_1253 1463327 - 1463470 + | hypothetical protein TERM 2022 1464499 - 1464489 - g 95 -6.8 -5.40474 | opp_overlap 1464489 1464488 ACCTTGTGAAAAAAA GGGT ATT ACCC ATTTAGCCTGTTGGG CJA_1254 1463503 - 1464921 + | IS66 family element, transposase CJA_1255 1464947 - 1465246 + | ISCja1, transposase orfA CJA_1256 1465243 - 1466103 + | ISCja1, transposase orfB TERM 2023 1466283 - 1466265 - g 72 -10.3 -3.36968 | opp_overlap 1466264 1466265 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_1257 1466096 - 1466320 + | IS66 family element, transposase CJA_1258 1466467 - 1466360 - | hypothetical protein TERM 2024 1466427 - 1466400 - G 72 -4.8 -4.60746 | opp_overlap 1466400 1466416, overlap 1466394 1466392 TCAAAAATATCAAAA GGGAAACCCC AAATAGCA GGGAATTCCC TATTGACTGATCCAT TERM 2025 1466648 - 1466662 + r 71 -7.2 -4.14243 | opp_overlap 1466647 TATGGATTTCAAATT TTTCAC TTG GTGAAA TTTTAGACTCAAATG CJA_1259 1468570 - 1466825 - | ParB-like nuclease domain TERM 2026 1466949 - 1466961 + g 71 -2 -4.93333 | AATTTTGCACCACCT TTCA ATTCG TGAA TTTTATCTTTTACTT TERM 2027 1467117 - 1467139 + g 74 -10.6 -3.13403 | overlap 1467115 1467115 1467121 1467123 GATTCATTGTTCACT GCAATTGCAG TTG CTGCTATTGC TGTTCCTACAACACC CJA_1260 1470337 - 1468772 - | IS66 family element, transposase TERM 2028 1469279 - 1469292 + g 79 -2.3 -5.28176 | overlap 1469270 TGCTTTGCCGGTTTT TCCCG CCTT CTGGA TTTTTTGTGCCTCGA CJA_1261 1470720 - 1470370 - | IS66 family element, Orf2 protein TERM 2029 1470689 - 1470671 - G 72 -6.7 -4.28548 | ATCGATTTACGAAAA TCCACCG GCAGA CGATGGA CATAGACCGGTACAT CJA_1262 1471031 - 1470717 - | IS66 family element, Orf1 protein CJA_1263 1471718 - 1471062 - | hypothetical protein CJA_1264 1473504 - 1471735 - | hypothetical protein TERM 2030 1472842 - 1472854 + g 74 -2 -5.09259 | overlap 1472840 1472839 ATGACTGGTACAGGT TTGT ATCAA ACAA TTTTCTTTTGCAGTG CJA_1265 1476816 - 1474498 - | sensory box/GGDEF family protein TERM 2031 1476003 - 1476028 + g 72 -8.3 -3.71672 | gap 1, opp_overlap 1476002 1476003 CTTTGTGCATTAAAT CCAGCTCGACCT CAT AGGTCT-GCTGG TTGGTTTTGGTGGCG TERM 2032 1476859 - 1476837 - H 71 -10.5 -2.59742 | overlap 1476836 CTCAATTGGGATAAT TGCCGGGCC ATCAA GGCCGGGCA GTGATCACTGGATAC TERM 2033 1477233 - 1477262 + H 88 -3.8 -5.7946 | opp_overlap 1477232 AAATAGCGCCAATAC CGTATTTTTA TAAGTTGTCC TAAAAATACG TTTTTTTATTCAGAG CJA_1266 1477356 - 1478003 + | hypothetical protein TERM 2034 1478523 - 1478556 + G 70 -9.9 -3.19463 | opp_overlap 1478552 GGATGTGCGTTACCT GGTGATTAATTTT AACCTGGA AAAATTAATCACC TTCCTCAATGGTGAC CJA_1267 1478101 - 1479051 + | hypothetical protein radA 1479048 - 1480418 + | DNA repair protein RadA CJA_1268 1481272 - 1480415 - | hypothetical protein TERM 2035 1480549 - 1480514 - G 100 -11.8 -4.70659 | CTCGATACTGAAAAA CAATTCGCCCAGGCTG CCAT CGGCCTGGGCCAGTTG CAGACCGCGCTCCAG CJA_1270 1481669 - 1481286 - | hypothetical protein TERM 2036 1481403 - 1481419 + g 100 -4.4 -5.47821 | gap 1 TACATGGGCCAGGCG GCCGTGC AGGT GCA-GGC TTTTTTTACCTGAGT CJA_1271 1482062 - 1481685 - | hypothetical protein TERM 2037 1482234 - 1482252 + H 89 -11 -4.1899 | overlap 1482236 TGCCGGTCGTATCAG TAGCCCTG TGG CAGGGCTG TTTTCGATCAAGTAC TERM 2038 1482236 - 1482250 + H 86 -11.4 -3.69483 | overlap 1482234 CCGGTCGTATCAGTA GCCCTG TGG CAGGGC TGTTTTCGATCAAGT TERM 2039 1482929 - 1482974 + G 71 -10.9 -2.91582 | CCATGAGATTGTAGC GCTGGCCCGCGCCCGGGATGC ACTG GCGGCCCAGGTGCTGGATAGC TATATCGATCAACTG CJA_1272 1482291 - 1483211 + | probable NAGC-like transcription regulator yajF TERM 2040 1483733 - 1483717 - g 77 -6.5 -4.6038 | opp_overlap 1483716 TATATCAAACTAAAA CCGCG TGCACGG CGCGG ATCTGATGAGTCACC CJA_1273 1483279 - 1483758 + | hypothetical protein CJA_1274 1483752 - 1484789 + | oxidoreductase CJA_1276 1484866 - 1485366 + | hypothetical protein CJA_1275 1485461 - 1485363 - | hypothetical protein TERM 2041 1485460 - 1485430 - G 100 -17 -4.4195 | opp_overlap 1485430 1485439, overlap 1485420 1485432 1485439 ATACATCCTATAAAA CAGGAAAAACGGCC AGC GGCCGTTTTTCCCA TCCATTATTAGCGCT TERM 2042 1485430 - 1485460 + g 76 -12.6 -2.65808 | opp_overlap 1485420 1485430 1485432 1485439, overlap 1485439 ATACATCCTATAAAA CAGGAAAAACGGCC AGC GGCCGTTTTTCCCA TCCATTATTAGCGCT TERM 2043 1485458 - 1485432 - G 100 -19.6 -3.81279 | opp_overlap 1485430 1485439, overlap 1485420 1485430 1485439 ACATCCTATAAAACA GGAAAAACGGCC AGC GGCCGTTTTTCC CATCCATTATTAGCG TERM 2044 1485451 - 1485439 - G 100 -10.5 -4.99972 | opp_overlap 1485430 1485439, overlap 1485432 1485430 ATAAAACAGGAAAAA CGGCC AGC GGCCG TTTTTCCCATCCATT TERM 2045 1485439 - 1485451 + g 100 -10.5 -4.63184 | opp_overlap 1485439 1485432 1485430, overlap 1485430 ATAAAACAGGAAAAA CGGCC AGC GGCCG TTTTTCCCATCCATT pelC 1486994 - 1485468 - | pectate lyase III CJA_1278 1487363 - 1488115 + | oxidoreductase, short chain dehydrogenase/reductase family CJA_1279 1488407 - 1488943 + | flavodoxin CJA_1280 1489039 - 1489491 + | hypothetical protein CJA_1281 1489622 - 1489858 + | hypothetical protein TERM 2046 1489951 - 1489972 + G 88 -11.5 -3.7347 | overlap 1489952 CGGTTTTTACGATCG TGCGGCCAG TCGC CTGGCCGCC TTGTTAAATGTTGAC TERM 2047 1489952 - 1489971 + G 90 -15 -2.836 | overlap 1489951 GGTTTTTACGATCGT GCGGCCAG TCGC CTGGCCGC CTTGTTAAATGTTGA CJA_1282 1489874 - 1490611 + | hypothetical protein CJA_1283 1490781 - 1492313 + | hypothetical protein TERM 2048 1492453 - 1492436 - f 74 -7.1 -4.2243 | opp_overlap 1492436 AGAAAGATCTTAAAA CAGATAT TTAA ATATCTG TTTCTTGGGCAATAG TERM 2049 1492436 - 1492453 + F 71 -7.1 -4.16016 | opp_overlap 1492436 AGAAAGATCTTAAAA CAGATAT TTAA ATATCTG TTTCTTGGGCAATAG CJA_1284 1492628 - 1493170 + | Spore Coat Protein U domain protein CJA_1285 1493194 - 1493724 + | putative type 1 pili pilus subunit fimC 1493757 - 1494506 + | type 1 pilus chaperone FimC fimD 1494493 - 1496796 + | type 1 pili usher protein FimD TERM 2050 1497158 - 1497189 + G 72 -5.9 -4.36127 | gap 3, overlap 1497159 AACCCCGTTATTTCG TCGGT-GGGCCAAGCC ATT GGC--GGCCCTACCGG TTTTCAATTGTTGAG TERM 2051 1497303 - 1497326 + G 72 -7.4 -3.87869 | opp_overlap 1497304, overlap 1497304 CCTATACCAGTAATC AGGTGCTATC AGTG GATGGCACCA TTTGTACCGGGTTGG TERM 2052 1497304 - 1497325 + G 71 -10.9 -2.924 | opp_overlap 1497304, overlap 1497303 CTATACCAGTAATCA GGTGCTATC AGTG GATGGCACC ATTTGTACCGGGTTG CJA_1288 1496810 - 1497790 + | putative type 1 pili tip component TERM 2053 1497812 - 1497792 - T 85 -14 -3.10164 | TGATTGAGTATTGAA CGGGTGGC ACCTG GCCACCCG GAGGTAATAATTACC CJA_1289 1498626 - 1497823 - | polysaccharide deacetylase CJA_1290 1498855 - 1499184 + | putative type 1 pili tip component TERM 2054 1499230 - 1499255 + F 82 -11.1 -3.53745 | overlap 1499226 1499231 1499233 GATATACTCCCTCGC CGATCCGGGCG CTGG TGCCCGGATCC TTGGTTTAGCCTGTC TERM 2055 1499231 - 1499254 + F 86 -14.6 -2.71765 | overlap 1499230 1499226 1499233 ATATACTCCCTCGCC GATCCGGGCG CTGG TGCCCGGATC CTTGGTTTAGCCTGT TERM 2056 1499233 - 1499252 + F 74 -11.4 -2.89837 | overlap 1499231 1499230 1499226 ATACTCCCTCGCCGA TCCGGGCG CTGG TGCCCGGA TCCTTGGTTTAGCCT TERM 2057 1499732 - 1499749 + G 74 -6.3 -4.51799 | gap 1, opp_overlap 1499718 ACCCATGCAATTCCT GGCATTGG CAA CCAA-GCC TTTTGTCAGTTTGCT uvs045 1499307 - 1500581 + | Uvs045 TERM 2058 1500643 - 1500586 - T 100 -10.2 -5.14563 | opp_overlap 1500600 1500603 1500607, overlap 1500588 1500600 1500603 1500607 TGCTGGATTAAAAAA CATCA-TGATGCAAACAACAAAGGCAGC CGGG GCTGCCTTTGTTGTTT-CTTCACTCAGG GTACGTGGTTACAAG TERM 2059 1500641 - 1500588 - T 91 -11.4 -4.20707 | opp_overlap 1500600 1500603 1500607, overlap 1500586 1500600 1500603 1500607 CTGGATTAAAAAACA TCA-TGATGCAAACAACAAAGGCAGC CGGG GCTGCCTTTGTTGTTT-CTTCACTCA GGGTACGTGGTTACA TERM 2060 1500600 - 1500629 + T 100 -19.5 -4.20516 | opp_overlap 1500588 1500586 1500600 1500603 1500607, overlap 1500603 1500607 ACATCATGATGCAAA CAACAAAGGCAGC CGGG GCTGCCTTTGTTG TTTCTTCACTCAGGG TERM 2061 1500629 - 1500600 - T 100 -19.5 -3.6959 | opp_overlap 1500600 1500603 1500607, overlap 1500588 1500586 1500603 1500607 ACATCATGATGCAAA CAACAAAGGCAGC CGGG GCTGCCTTTGTTG TTTCTTCACTCAGGG TERM 2062 1500626 - 1500603 - T 100 -15.4 -3.97674 | opp_overlap 1500603 1500600 1500607, overlap 1500600 1500588 1500586 1500607 TCATGATGCAAACAA CAAAGGCAGC CGGG GCTGCCTTTG TTGTTTCTTCACTCA TERM 2063 1500603 - 1500626 + T 100 -15.4 -4.22554 | opp_overlap 1500600 1500588 1500586 1500603 1500607, overlap 1500600 1500607 TCATGATGCAAACAA CAAAGGCAGC CGGG GCTGCCTTTG TTGTTTCTTCACTCA TERM 2064 1500607 - 1500622 + T 93 -10.4 -4.67968 | opp_overlap 1500603 1500600 1500588 1500586 1500607, overlap 1500603 1500600 GATGCAAACAACAAA GGCAGC CGGG GCTGCC TTTGTTGTTTCTTCA TERM 2065 1500622 - 1500607 - T 93 -10.4 -4.58585 | opp_overlap 1500607 1500603 1500600, overlap 1500603 1500600 1500588 1500586 GATGCAAACAACAAA GGCAGC CGGG GCTGCC TTTGTTGTTTCTTCA CJA_1292 1505775 - 1500652 - | cartilage oligomeric matrix protein TERM 2066 1505687 - 1505704 + g 72 -8.5 -3.78934 | CTTATGCCGTCGTTA GGGTTTT TGGG AAAACCC TTATTATCACCACCA ompA 1506837 - 1505803 - | outer membrane protein A TERM 2067 1506103 - 1506113 + g 81 -6.8 -4.72029 | AATGGCTGCCGTATT GCGA ATT TCGC TTTTATTAAATTCAA TERM 2068 1506307 - 1506279 - G 95 -15.4 -2.65766 | gap 1, opp_overlap 1506271, overlap 1506270 GGAAATTCCAGATGA GCGCCAGCCCCAA CTTA TTGGGGCTGGC-C TTGCCCATGAGGTTA TERM 2069 1506931 - 1506949 + r 78 -5.2 -5.055 | TATTGCCGGTTTTTC CACGGTTG GGT TGGCCGTG TTTTTTACGGGTTAA CJA_1294 1508440 - 1507334 - | Regulatory P domain of the subtilisin-like proprotein TERM 2070 1508558 - 1508546 - R 78 -4.8 -5.06414 | opp_overlap 1508546 TTCGGGCAACAAAAA TCCC CCGCC GGGA TCTGTGTCTCGGAAA CJA_1295 1509479 - 1509162 - | hypothetical protein CJA_1296 1511101 - 1509476 - | Uncharacterized iron-regulated membrane protein DUF337 TERM 2071 1510180 - 1510160 - G 70 -9.7 -3.14132 | GTCGCTGCTCAGCAA TTCACCGGT CAC ACCGGAGAA CACCAAGTCTTCGCC CJA_1297 1511418 - 1511098 - | conserved membrane-spanning domain protein TERM 2072 1511468 - 1511499 + r 95 -11.2 -4.45168 | opp_overlap 1511473, overlap 1511459 1511473 GGGAGCCATTTTATA TGAAATTCAATATC AAAT GATATTGAATTTTA TTTGTATTTTGGGGC TERM 2073 1511494 - 1511473 - R 77 -8.9 -3.83998 | opp_overlap 1511459 1511473 1511468 CCATTTTATATGAAA TTCAATATC AAAT GATATTGAA TTTTATTTGTATTTT TERM 2074 1511473 - 1511494 + r 100 -8.9 -5.15682 | opp_overlap 1511473, overlap 1511459 1511468 CCATTTTATATGAAA TTCAATATC AAAT GATATTGAA TTTTATTTGTATTTT TERM 2075 1511582 - 1511563 - R 77 -10.7 -3.34222 | AGGATGATTGCACAA GGCCCAC TGTATC GTGGGCC GGTGCCTGAGGATTA CJA_1298 1513844 - 1511595 - | ferripyoverdine receptor TERM 2076 1511876 - 1511900 + g 78 -12.1 -2.9294 | GTGTTACTTTTTCTG CACCTTGCCAG AGG CTGGCAGGGAG TGTGTAACTGCTGTG TERM 2077 1513035 - 1513062 + g 86 -7 -4.98436 | gap 1, opp_overlap 1513029 GTTCCAATAGGGCAC TGCACC-CCAGGT GGA GCCTGTAGGTGCA TTTTTCTGGTATTGA TERM 2078 1514041 - 1514025 - R 100 -9.4 -5.63517 | opp_overlap 1514024 1514022 1514025 GGCGGAAAGAAAAAA GGGAGC ACTAA GCTCCC CTGTTATTATCGCGA exbD 1514479 - 1514066 - | ExbD TERM 2079 1514399 - 1514429 + g 70 -10.5 -2.80975 | opp_overlap 1514402, overlap 1514398 AATAATCAGTAGCAC CAACATGACATCC ACCAG GGGAGTCATGTTG ATTTCACTCATGACT exbB 1515202 - 1514483 - | ExbB uvs044 1515871 - 1515239 - | Uvs044 TERM 2080 1516311 - 1516323 + G 81 -4.8 -5.02476 | GAACTAAACCAATGG TGGC ACAAG GCCA TTTTTTACGAGATCT amy13J 1516170 - 1517888 + | alpha amylase, putative, amy13J TERM 2081 1517928 - 1517905 - T 95 -11 -4.42386 | opp_overlap 1517905 TTGCTATCCATAAAA CAGGGGGATT ATAT ATTCCCCCTG TTTTATGCCCGCCAT TERM 2082 1517905 - 1517928 + T 91 -11 -4.37092 | opp_overlap 1517905 TTGCTATCCATAAAA CAGGGGGATT ATAT ATTCCCCCTG TTTTATGCCCGCCAT CJA_1303 1518602 - 1517961 - | hypothetical protein TERM 2083 1518697 - 1518675 - R 100 -13.4 -4.7373 | opp_overlap 1518672 1518671 1518675 TTATGCCACTAAAAA GGCCGCTGTT GGT AGCAGCGGCC TGGCTTTGAGCAATA TERM 2084 1518675 - 1518697 + r 90 -15.6 -2.64472 | opp_overlap 1518675, overlap 1518672 1518671 TTATGCCACTAAAAA GGCCGCTGTT GGT AGCAGCGGCC TGGCTTTGAGCAATA CJA_1304 1519651 - 1518725 - | hypothetical protein TERM 2085 1519843 - 1519865 + r 72 -2.6 -5.03314 | CTTTTTCATTGATGT CGATGATATG GAC CTTGGCATCG TTTTTTAGCGATACC CJA_1305 1520087 - 1519971 - | hypothetical protein CJA_1306 1522444 - 1520096 - | TonB-dependent receptor chrA 1523988 - 1522636 - | chromate transporter TERM 2086 1522737 - 1522725 - G 95 -6.9 -5.26875 | GCCTGAAGTAAAAAA GCAGC AGG GCCGC AAACAGGGTAATCAG TERM 2087 1523224 - 1523212 - G 79 -4.8 -5.00616 | CGCCTTGGTAAAAAA CCAG CCCAT CTGG GTCAGGGTATGGCCC TERM 2088 1523382 - 1523369 - G 91 -9.5 -4.71426 | opp_overlap 1523369 1523369 1523370 TGGTCATCAATAAAA GCCGC TGTA GCGGC TGTGCTGTGGCGGGT TERM 2089 1524096 - 1524072 - R 100 -15.7 -5.60993 | GCTGGGATAAAAAAA GCCCGCACGAT AGT ATCGGGCGGGC AAGGGGTTTGACTTG CJA_1308 1526262 - 1524127 - | TonB-dependent receptor TERM 2090 1525973 - 1525916 - G 72 -6.1 -4.34402 | gap 1, opp_overlap 1525962 1525963 TTGTTGATATCAAAA CCACGAGCTTCGAAGTAGGTACGATCGG TTT CCGAGCGCTTC-ACATTGACGCCCGTGG CCGTATCCAGTGCGT CJA_1309 1527291 - 1526455 - | hypothetical protein TERM 2091 1526740 - 1526723 - G 71 -3.3 -4.79451 | opp_overlap 1526723 ACGTGAAAGACAAAA TCCACCG TGTT CGCCGGA TTTAACAGGTTAACA CJA_1310 1527462 - 1528517 + | hypothetical protein CJA_1311 1528594 - 1528908 + | IS66 family element, Orf1 protein TERM 2092 1528936 - 1528954 + G 77 -8.8 -4.09864 | overlap 1528951 ATGTGCCGGTATACG TACACCGG CAA CCGGTGGA TTTTCGCAAATCCAT CJA_1312 1528905 - 1529255 + | IS66 family element, Orf2 protein TERM 2093 1530305 - 1530295 - g 95 -6.8 -5.40474 | opp_overlap 1530295 1530294 ACCTTGTGAAAAAAA GGGT ATT ACCC ATTTAGCCTGTTGGG TERM 2094 1530840 - 1530822 - g 72 -10.3 -3.36968 | opp_overlap 1530821 1530822 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_1313 1529294 - 1530877 + | IS66 family element, transposase TERM 2095 1531116 - 1531074 - T 100 -13.6 -4.11216 | gap 1, overlap 1531075 TGTCGATGTGGAAAA GGTGCTGTCACAGACGCAC TGAATG ATACGCCTGTGACAGC-CC TGGGGGGTATTACCC TERM 2096 1531116 - 1531075 - T 85 -13.8 -3.06515 | overlap 1531074 GTCGATGTGGAAAAG GTGCTGTCACAGACGCAC TGAATG ATACGCCTGTGACAGCCC TGGGGGGTATTACCC CJA_1314 1532997 - 1531126 - | probable ATP-binding component of ABC transporter TERM 2097 1531974 - 1531989 + g 75 -5.4 -4.72272 | gap 1, opp_overlap 1531974, overlap 1531976 1531977 GCCTCACCCACTCAA GCTCCTG CTT CAGG-GC TTTTTGGTGCGCGGC TERM 2098 1533050 - 1533040 - H 74 -5.4 -4.62069 | GTTTTACTGTAAAAA GTCA TAA TGAC AATAAGTTTCTGGTA TERM 2099 1534376 - 1534354 - g 88 -8.4 -4.62069 | opp_overlap 1534354 1534357 TTCCGAGTGGAAAAA CAATCGCCGC GCA ACGGCAATCG TGTTCTCTGCCATGA CJA_1315 1533077 - 1534669 + | transport protein TERM 2100 1534754 - 1534738 - g 72 -7.9 -3.96148 | opp_overlap 1534737 GTTGTTGATTACAAA GCGCTGG CGG CCAGGGC GATTTCCCAACCCCT gly43F 1534705 - 1535721 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43F TERM 2101 1535769 - 1535744 - T 100 -17.7 -5.40072 | opp_overlap 1535744 GTCGTGTTAAAAAAA CAGCCGTCAGT ATGC ACTGACGGCTG TTTTTTTATGGGAGA TERM 2102 1535744 - 1535769 + T 100 -17.7 -5.60993 | opp_overlap 1535744 GTCGTGTTAAAAAAA CAGCCGTCAGT ATGC ACTGACGGCTG TTTTTTTATGGGAGA CJA_1317 1537311 - 1535785 - | putative lipoprotein minC 1537494 - 1538240 + | septum site-determining protein MinC minD 1538272 - 1539084 + | septum site-determining protein MinD minE 1539084 - 1539341 + | cell division topological specificity factor MinE TERM 2103 1539409 - 1539384 - g 88 -8.9 -4.62783 | opp_overlap 1539384 CACTCAGGTTAAAAA GGATGCTCTGC CTAG GCGGGGCATCC TTTTTTTGTTGGCTG TERM 2104 1539384 - 1539409 + G 100 -13.3 -5.8187 | opp_overlap 1539384 CACTCAGGTTAAAAA GGATGCTCTGC CTAG GCGGGGCATCC TTTTTTTGTTGGCTG ycel4 1539347 - 1540009 + | yceI-like protein, yceI4 TERM 2105 1540787 - 1540774 - g 76 -8.1 -4.17023 | CGAATTATTTGAAAA CCTGC CTGA GCAGG GTGATGCTGATAAAC TERM 2106 1541040 - 1541024 - g 71 -2.2 -4.93696 | overlap 1541034 CCCAAAGACCAAAAA GCGG TGAAAGTTG CCGC GCAAACCTTTCGTGC TERM 2107 1541161 - 1541139 - g 81 -13.4 -2.72152 | opp_overlap 1541139, overlap 1541136 1541135 TGGATGATAAAGGTA CACCCACCCC GGT GGAGCGGGTG TTGATTGCGCCACCC TERM 2108 1541459 - 1541475 + G 70 -7.3 -4.08216 | opp_overlap 1541440 1541437 1541411 GCCGCGGCCAAGCGC GCATCTA CCG TGGATGC TTTTGCCAAAAGTGC CJA_1322 1540028 - 1541569 + | hypothetical protein TERM 2109 1541607 - 1541588 - T 90 -7 -5.27476 | opp_overlap 1541588 TGGAAGAAAATAAAA CCCCCGCA TTAT CGCCGGGG GTTTTTATGGGAGCT TERM 2110 1541588 - 1541608 + T 82 -6.8 -4.83615 | opp_overlap 1541588 TGGAAGAAAATAAAA CCCCCG CATTATCGC CGGGGG TTTTTATGGGAGCTA CJA_1323 1544082 - 1541638 - | radical SAM domain protein TERM 2111 1543197 - 1543217 + g 79 -3.9 -5.03314 | overlap 1543199 CATTGTTGGGGTCGA TCGCGGC CATCTGC GCCGCCA TTTTTTCCGGCTCCA CJA_1324 1544640 - 1544182 - | hypothetical protein CJA_1325 1544957 - 1544637 - | phage shock protein TERM 2112 1545022 - 1545003 - R 100 -15 -4.55798 | opp_overlap 1545003 CAGCTTAAATGAAAA CGCCCGCA GCAG TGCGGGCG TTTGAGGGAGGAACA TERM 2113 1545003 - 1545022 + r 100 -15 -3.53012 | opp_overlap 1545003 CAGCTTAAATGAAAA CGCCCGCA GCAG TGCGGGCG TTTGAGGGAGGAACA CJA_1326 1545583 - 1545047 - | hypothetical protein TERM 2114 1545261 - 1545274 + g 74 -2.3 -5.0538 | ATCAGTAGCTTTGCC TCGGC TTCC GCCAA TTTTTTGAACTCGGC CJA_1327 1546110 - 1545868 - | hypothetical protein CJA_1328 1546442 - 1546113 - | putative translation initation factor SUI1 TERM 2115 1546366 - 1546348 - G 90 -14.6 -2.82987 | opp_overlap 1546362, overlap 1546339 CGAATACGCACTACA CCATCCCC CTG GGGGATGG CCGGCGTCGGCTTAT TERM 2116 1547480 - 1547499 + G 71 -2.7 -4.73682 | overlap 1547473 1547476 1547479 CGGGTACTGGGGCTG CCGCTGC GTTTCG GCTGTGG TTTTATGTTGTCCCA TERM 2117 1547542 - 1547556 + G 70 -7 -4.11216 | overlap 1547543 CGATTGCCGTTACGG GCGCGG TGC CCGCGG TTTTGGCCATCCCGG TERM 2118 1547543 - 1547555 + G 72 -10.5 -3.06515 | overlap 1547542 GATTGCCGTTACGGG CGCGG TGC CCGCG GTTTTGGCCATCCCG CJA_1329 1546526 - 1547716 + | beta-lactamase CJA_1330 1547716 - 1547934 + | host factor for lysis of phiX174 infection-related protein TERM 2119 1548322 - 1548334 + G 100 -3.3 -5.60993 | TGCAGCACTTGCCTG CAGCG GAT CGCTA TTTTTTTCTCACCGC TERM 2120 1548418 - 1548439 + G 78 -8 -4.39002 | gap 1, overlap 1548422 TGCGTTTGCACTCGG CGCAGGGCG ATAAG CGCC-TGCG TTTTGTCGGCCGTTT CJA_1331 1548126 - 1550678 + | sensory box/GGDEF domain/EAL domain protein TERM 2121 1550663 - 1550688 + T 100 -9 -5.45802 | opp_overlap 1550664, overlap 1550664 TGGCTGGATCAAGCA ACTGGAAGGG CCTTGA CCCTTCCAGG TTTTTATTTTAGCGC TERM 2122 1550687 - 1550664 - T 86 -13.2 -3.39895 | opp_overlap 1550663 1550664 GGCTGGATCAAGCAA CTGGAAGGGC CTTG ACCCTTCCAG GTTTTTATTTTAGCG TERM 2123 1550664 - 1550687 + T 95 -12.5 -3.86397 | opp_overlap 1550664, overlap 1550663 GGCTGGATCAAGCAA CTGGAAGGG CCTTGA CCCTTCCAG GTTTTTATTTTAGCG CJA_1332 1552181 - 1550709 - | Peptidase family M48 family TERM 2124 1551135 - 1551149 + g 72 -7.8 -3.90318 | CATGATCTGGTAGGT GACTCG TGT CGGGTC TTTCTCCAGTAATGG TERM 2125 1551228 - 1551268 + g 77 -8.9 -4.11216 | opp_overlap 1551211 CAGTGCCCAGCCATA GCGGCTGGCATCGGGAGAG TCA CTCTCGCGATCCAATTCGC TTTTAAACATCCGGG TERM 2126 1551749 - 1551780 + g 75 -5.2 -4.67943 | gap 1 GCTGGCTCAGGTGGC CCAATTCGT-GCG CAAGTAC CGCCGCGAGTTGG TTTTCTGTCTTGGCG CJA_1333 1552376 - 1552660 + | Uncharacterized protein family UPF0033 family TERM 2127 1553077 - 1553065 - g 91 -10.5 -4.19238 | TCCGGAAGCTGAAAA GGCCG CGG CGGCC CTCAGTGTTGCAACA CJA_1334 1552757 - 1555738 + | putative peptidase, insulinase family CJA_1335 1555761 - 1555880 + | hypothetical protein TERM 2128 1557312 - 1557341 + G 93 -15.1 -3.01712 | opp_overlap 1557319 CCTACAGTGATTCTC GCCCAAACCGTAA AAGG TTACGGTATGGGC TCTTCGGGCGAAGCG TERM 2129 1557704 - 1557680 - g 84 -4.2 -5.28983 | opp_overlap 1557682, overlap 1557672 1557682 GGTAAAAGATAAAAA TATCGGCAAG CAAAT CGTGCCGATT GTTCCCGATGAAGCG TERM 2130 1557702 - 1557682 - g 72 -6.8 -4.25747 | opp_overlap 1557682, overlap 1557672 1557680 TAAAAGATAAAAATA TCGGCAAG CAAAT CGTGCCGA TTGTTCCCGATGAAG aceE 1556163 - 1558814 + | pyruvate dehydrogenase (acetyl-transferring), homodimeric type TERM 2131 1558816 - 1558848 + F 76 -7.7 -4.27467 | opp_overlap 1558818 1558819, overlap 1558818 1558819 1558821 CCCTGAGTGTGTAAA AACCATCGCCCTC CCACAAA GAGGGCGATGCTG TTTCTATTCGTATTC TERM 2132 1558818 - 1558846 + F 83 -10.3 -3.72229 | opp_overlap 1558818 1558819, overlap 1558816 1558819 1558821 CTGAGTGTGTAAAAA CCATCGCCCTC CCACAAA GAGGGCGATGC TGTTTCTATTCGTAT TERM 2133 1558846 - 1558818 - f 100 -11.7 -4.58395 | opp_overlap 1558818 1558816 1558819 1558821, overlap 1558819 CTGAGTGTGTAAAAA CCATCGCCCTCCC ACA AAGAGGGCGATGC TGTTTCTATTCGTAT TERM 2134 1558819 - 1558845 + F 84 -13.8 -2.82253 | opp_overlap 1558818 1558819, overlap 1558818 1558816 1558821 TGAGTGTGTAAAAAC CATCGCCCTC CCACAAA GAGGGCGATG CTGTTTCTATTCGTA TERM 2135 1558845 - 1558819 - f 100 -15.2 -3.34716 | opp_overlap 1558819 1558818 1558816 1558821, overlap 1558818 TGAGTGTGTAAAAAC CATCGCCCTCCC ACA AAGAGGGCGATG CTGTTTCTATTCGTA TERM 2136 1558821 - 1558843 + F 73 -10.6 -2.94681 | opp_overlap 1558819 1558818, overlap 1558819 1558818 1558816 AGTGTGTAAAAACCA TCGCCCTC CCACAAA GAGGGCGA TGCTGTTTCTATTCG gt4H 1558901 - 1560466 + | glycosyl transferase, putative, gt4H TERM 2137 1560521 - 1560485 - T 93 -12.4 -3.72576 | opp_overlap 1560488 1560494, overlap 1560488 1560494 CCTGCGGTTATGAAA TGACAAAAAGGCCAGC CTTGC GCTGGCCTTTTTGTTT TTTACCAGCCATAGC TERM 2138 1560518 - 1560488 - T 100 -18.5 -2.96695 | opp_overlap 1560488 1560494, overlap 1560485 1560494 GCGGTTATGAAATGA CAAAAAGGCCAGC CTTGC GCTGGCCTTTTTG TTTTTTACCAGCCAT TERM 2139 1560488 - 1560518 + T 100 -18.5 -5.00884 | opp_overlap 1560488 1560485 1560494, overlap 1560494 GCGGTTATGAAATGA CAAAAAGGCCAGC CTTGC GCTGGCCTTTTTG TTTTTTACCAGCCAT TERM 2140 1560494 - 1560512 + T 100 -11.7 -5.75538 | opp_overlap 1560488 1560485 1560494, overlap 1560488 ATGAAATGACAAAAA GGCCAGC CTTGC GCTGGCC TTTTTGTTTTTTACC TERM 2141 1560512 - 1560494 - T 100 -11.7 -5.05228 | opp_overlap 1560494 1560488, overlap 1560488 1560485 ATGAAATGACAAAAA GGCCAGC CTTGC GCTGGCC TTTTTGTTTTTTACC CJA_1338 1561113 - 1560523 - | hypothetical protein TERM 2142 1560998 - 1561032 + g 71 -2.8 -4.84761 | gap 1 CCGTTATAGCTGACC CTGGTGGCTGTTTGC GACAAG GCC-GCATCCACCAG TTTTTCTGCCGCTGT CJA_1339 1561528 - 1561139 - | hypothetical protein mobA 1562280 - 1561597 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 2143 1562784 - 1562762 - g 72 -4.8 -4.72986 | overlap 1562763 CATGTGGATGAAAAA GGGTTTGTGT TTT ACACCAACCT TAACAGCCGCAAGGC pdxH 1562546 - 1563190 + | pyridoxamine 5'-phosphate oxidase TERM 2144 1563812 - 1563797 - g 72 -6 -4.4078 | overlap 1563798 GTGGGCGAAGTAAAA GCCCTG ACGG CGGGGC AGGGGGTGGATGTCA CJA_1342 1563200 - 1564177 + | alcohol dehydrogenase, zinc-containing TERM 2145 1564434 - 1564408 - g 83 -5.7 -5.0538 | opp_overlap 1564408 1564425 1564427 1564429 CTGGATTTGAAAAAA CCGGCAGGCCA GCAGT TGGCGCGGCGG CTTATCGATAGTGCC CJA_1343 1564174 - 1565373 + | CAIB/BAIF family protein CJA_1344 1565370 - 1565642 + | hypothetical protein CJA_1345 1565626 - 1566231 + | Cytidine and deoxycytidylate deaminase zinc-binding region domain protein TERM 2146 1566230 - 1566216 - T 72 -2.8 -5.055 | opp_overlap 1566227, overlap 1566219 1566229 GGAATTTGGAAAAAA CACTCC CCT GAAATG AGCAGGGGCCGCAAT TERM 2147 1566259 - 1566229 - T 82 -11 -3.54307 | opp_overlap 1566227 1566235, overlap 1566216 1566219 1566230 1566232 AACACTCCCCTGAAA TGAGCAGGGGCCGC AAT GCGGCCCCTTATCG GATTCTGTCCTTAGG TERM 2148 1566258 - 1566230 - T 86 -14.5 -2.72263 | opp_overlap 1566227 1566235, overlap 1566219 1566229 1566232 ACACTCCCCTGAAAT GAGCAGGGGCCGC AAT GCGGCCCCTTATC GGATTCTGTCCTTAG TERM 2149 1566256 - 1566232 - T 74 -11.3 -2.90615 | opp_overlap 1566227 1566235, overlap 1566219 1566230 1566229 ACTCCCCTGAAATGA GCAGGGGCCGC AAT GCGGCCCCTTA TCGGATTCTGTCCTT TERM 2150 1566235 - 1566253 + T 100 -17.4 -3.39005 | opp_overlap 1566219 1566232 1566230 1566229, overlap 1566227 CCCCTGAAATGAGCA GGGGCCGC AAT GCGGCCCC TTATCGGATTCTGTC CJA_1346 1567948 - 1566539 - | decarboxylase family protein TERM 2151 1567615 - 1567629 + g 71 -2.8 -4.77165 | opp_overlap 1567597, overlap 1567587 TGAATAAATGTTCAC TGATAC CGC GAATCA TTTTGTTATCGACAA hyl84 1569178 - 1568087 - | hyaluronidase, putative, hyl84A TERM 2152 1569145 - 1569167 + g 73 -4 -4.87665 | overlap 1569147 CGAAAAAACCTTCAA TGGTGCCCAG TGG CTGGGCGGGA TTTTTATACATGGGG TERM 2153 1569816 - 1569795 - g 75 -5.1 -4.63527 | overlap 1569812 CGACTACTCCAAAAA CCTGATTAC CGAA GAAACCAGG GCCGCACTCCTGGCG pgi 1569625 - 1571289 + | glucose-6-phosphate isomerase TERM 2154 1571754 - 1571727 - g 72 -7.7 -3.87641 | gap 1, overlap 1571729 AATACCGCTGATAAA GAGGC-CCTGGC TGAAG GCCAGGCGCCTA ACCTGGGGGTTGTAT TERM 2155 1571752 - 1571729 - g 74 -10.3 -3.5241 | gap 1, overlap 1571727 TACCGCTGATAAAGA GGC-CCTGGC TGAAG GCCAGGCGCC TAACCTGGGGGTTGT TERM 2156 1572733 - 1572745 + G 72 -10.5 -3.02511 | ATGGCGAGCTGGTAT GGCGC GAA GCGCC TATTGAGAGCCTGGA edd 1571421 - 1573364 + | phosphogluconate dehydratase TERM 2157 1573373 - 1573401 + F 79 -4.6 -5.10461 | gap 2, opp_overlap 1573373 1573377, overlap 1573375 CTGGTGACCAGTTAA C--TGACCCCGAAC CCT GTTCGGGGTCTTCG TTTTTATTACCTGGC TERM 2158 1573399 - 1573373 - f 73 -10.8 -3.09516 | opp_overlap 1573373 1573375, overlap 1573377 CTGGTGACCAGTTAA CTGACCCCGAAC CCT GTTCGGGGTCTT CGTTTTTATTACCTG TERM 2159 1573375 - 1573397 + F 100 -17.8 -3.9407 | opp_overlap 1573373 1573377, overlap 1573373 GGTGACCAGTTAACT GACCCCGAAC CCT GTTCGGGGTC TTCGTTTTTATTACC TERM 2160 1573395 - 1573377 - f 86 -14.6 -2.55544 | opp_overlap 1573375 1573373, overlap 1573373 TGACCAGTTAACTGA CCCCGAAC CCT GTTCGGGG TCTTCGTTTTTATTA TERM 2161 1573468 - 1573488 + F 81 -4.7 -5.16681 | ACTGACAGGATTAGC TCACATGCT TGA GGCATTTGA TTTTGTTATTTTTGG zwf 1573472 - 1574959 + | glucose-6-phosphate 1-dehydrogenase TERM 2162 1575047 - 1575059 + G 70 -4.7 -4.50976 | ATGCTATCGAAGAGC GCGGC GAA GCCAC TTTTATGGTGTCCGG pgl 1574953 - 1575657 + | 6-phosphogluconolactonase kdgA 1575688 - 1576320 + | KHG/KDPG aldolase TERM 2163 1576360 - 1576383 + F 70 -2.2 -5.0538 | opp_overlap 1576361, overlap 1576361 AACCCGTTTTGAATT ATCGGCCCGC GCGA GCGGGCAAAC TTTTTTAACCTAGGA gap 1576406 - 1577413 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2164 1578234 - 1578223 - g 81 -5.8 -4.83169 | overlap 1578227 ATCGGTGTACAAAAA CGCA TCAT TGCG CGCTCACGTGCACTG pyk 1577431 - 1578876 + | pyruvate kinase TERM 2165 1578907 - 1578923 + G 100 -9.4 -5.81412 | opp_overlap 1578907 TATCGGTCTAAAAAA CGGCAG CATGA CTGCCG TTTTTTTTGCCTGGG TERM 2166 1578923 - 1578907 - g 100 -10.1 -5.0133 | opp_overlap 1578907 TATCGGTCTAAAAAA CGGCAGC ATG ACTGCCG TTTTTTTTGCCTGGG CJA_1355 1578860 - 1579027 + | hypothetical protein CJA_1356 1579040 - 1579885 + | peptidase, M23/M37 family TERM 2167 1581412 - 1581430 + G 81 -5.9 -4.76123 | overlap 1581414 GGGTTGTACTCTTGT CGGCCTG TTATT CAGGCGG TTTTATTGATGATTT CJA_1357 1579914 - 1581734 + | MORN repeat family protein CJA_1358 1581810 - 1582019 + | Tetraacyldisaccharide-1-P 4-kinase TERM 2168 1584684 - 1584701 + G 76 -7.7 -4.28774 | overlap 1584694 ATGTGGCCAGATTGG CTGATGC CTTG GCATCGG TTTTGCCTTGGGTCA alaS 1582106 - 1584733 + | alanyl-tRNA synthetase TERM 2169 1585754 - 1585728 - g 81 -7.3 -4.72272 | opp_overlap 1585753, overlap 1585730 1585731 GTGTGGCAGCAAAAA TACTGGCTCCG ATTGG CGAAGCCAACA TTGAAGTCGATGTGA TERM 2170 1585752 - 1585730 - g 72 -7.7 -3.98256 | overlap 1585728 1585731 GTGGCAGCAAAAATA CTGGCTCCG ATTGG CGAAGCCAA CATTGAAGTCGATGT lysC 1584887 - 1586134 + | aspartate kinase, monofunctional class csrA 1586352 - 1586543 + | carbon storage regulator TERM 2171 1586585 - 1586625 + T 100 -12 -4.64598 | overlap 1586587 ACTCTCTAAGGTTTG C-GCGACGCGGCGGTATGAT TTT GTCAT-CCGCCGCGTTGTTG TTTTTGCGGTGATTA TERM 2172 1586587 - 1586622 + T 100 -17 -4.42748 | gap 1, overlap 1586585 TCTCTAAGGTTTGCG CGACGCGGCGGTATGAT TTT GTCAT-CCGCCGCGTTG TTGTTTTTGCGGTGA TERM 2173 1586894 - 1586875 - T 95 -12.2 -4.21462 | opp_overlap 1586875 ATTGATTATCGAAAA GCCCAATC GAAA GATTGGGC TTTTTTGTTTGGCCT TERM 2174 1586875 - 1586894 + T 100 -12.2 -5.64421 | opp_overlap 1586875 ATTGATTATCGAAAA GCCCAATC GAAA GATTGGGC TTTTTTGTTTGGCCT TERM 2175 1586965 - 1586953 - T 82 -2.7 -5.4833 | TGAGGGAATAAAAAA TTTCC GGG AGAAA TTTTCAACGCTGCAT TERM 2176 1587047 - 1587030 - T 100 -9.1 -5.60993 | opp_overlap 1587030 CGCGCCATAAAAAAA GGCGGAA TAAA TCCCGCC TTTGTCAGTGTTGCT valS 1589933 - 1587069 - | valyl-tRNA synthetase TERM 2177 1589857 - 1589870 + g 79 -3.8 -5.06816 | GCGTCGTTCATGACC GGCT TGAAAT AGCC TTTTTCTTCCCAGGT TERM 2178 1590407 - 1590395 - g 71 -2.7 -4.76874 | opp_overlap 1590395 AAGATAAAATTAAAA TTGTA GAT CACAA GATTATTTTTGCGGG TERM 2179 1590542 - 1590554 + G 90 -7.7 -5.02074 | TTTTAATCCGACCTG TCCAG CCT CTGGA TTTTTTCCGGGATGA TERM 2180 1591153 - 1591095 - g 70 -6.8 -4.09685 | opp_overlap 1591108, overlap 1591108 1591117 1591126 TGGCAGTCTTGAAAA TTTGCTGGACGAATCATCGAAAGGGTGA AAA TCACCCTCCCGATGATTGCTCGAATACA AAATAATGCGGCGAG lcbA 1590106 - 1591122 + | capsular polysaccharide synthesis TERM 2181 1591140 - 1591108 - T 100 -17.9 -3.14463 | opp_overlap 1591108, overlap 1591095 1591117 1591126 AATTTGCTGGACGAA TCATCGAAAGGGTGA AAA TCACCCTCCCGATGA TTGCTCGAATACAAA TERM 2182 1591108 - 1591140 + T 83 -13.5 -3.16564 | opp_overlap 1591108 1591095 1591117 1591126 AATTTGCTGGACGAA TCATCGAAAGGGTGA AAA TCACCCTCCCGATGA TTGCTCGAATACAAA TERM 2183 1591131 - 1591117 - T 79 -10 -3.72241 | opp_overlap 1591108, overlap 1591108 1591095 1591126 GACGAATCATCGAAA GGGTGA AAA TCACCC TCCCGATGATTGCTC CJA_1365 1593228 - 1591126 - | hypothetical protein TERM 2184 1591977 - 1591990 + g 76 -8.1 -4.18197 | opp_overlap 1591972 1591977 TTTCAATATAGACAA CCTGG TCAC CCAGG TTTTCGATAACCAAT TERM 2185 1592255 - 1592273 + g 71 -3 -4.82901 | ATACGACCTTGCATG GCAACCGG TTG TTGGTAGC TTTTTGTCAGCAGGC gt4F 1594523 - 1593327 - | glycosyl transferase, putative, gt4F TERM 2186 1594111 - 1594121 + g 77 -8.2 -4.09685 | GGGTAGGTGCGCTTG CGCG ATC CGCG TTTTCCCGCCTCCCA gt2F 1595446 - 1594550 - | glycosyl transferase, putative, gt2F TERM 2187 1594620 - 1594634 + gr 74 -2.1 -5.08088 | GTGCGTTTTACCTCA TTGCG GATGG CGTAA TTTTTCTTCCAGGTT CJA_1368 1597289 - 1595412 - | hypothetical protein TERM 2188 1597202 - 1597212 + gr 70 -5.4 -4.30034 | GTATGACAAAGCTGC CCAA CCA TTGG TTTTGATGCGGTTTT gt9B 1598414 - 1597311 - | lipopolysaccharide heptosyltransferase, putative, gt9B CJA_1370 1598778 - 1598383 - | hypothetical protein CJA_1371 1599652 - 1598945 - | metallo-beta-lactamase family protein TERM 2189 1599733 - 1599700 - R 78 -12.5 -2.71011 | ACTTTGCTTGAACCA GCTTGCTGGACTGCA TAGG TGTAGTGCAGCAAGC GTTAGCGAAAAATCA CJA_1372 1600553 - 1599735 - | hypothetical protein TERM 2190 1599799 - 1599771 - G 90 -11.8 -3.88097 | CGAGACAACCAACAA CCCTGCCGCAAA TATTT TTTGCAACAGGG CATTGGCTATTTTGT CJA_1373 1601102 - 1600572 - | sulfurtransferase CJA_1374 1601589 - 1601122 - | transcriptional activator CJA_1375 1601677 - 1601790 + | cyd operon protein YbgT TERM 2191 1602494 - 1602484 - g 81 -6.8 -4.60678 | overlap 1602486 CAAAAATACAACAAA GCCA GCA TGGC AGAGGTCTACGGCAA CJA_1376 1601887 - 1603044 + | hypothetical protein TERM 2192 1603090 - 1603066 - f 100 -14.4 -4.18018 | TCCGGGCATCTAAAA CCTGCTGACA TAAGT TGTCAGCAGG TAGGATTAGGCTGGA CJA_1377 1603136 - 1603546 + | Lactoylglutathione lyase CJA_1378 1603593 - 1603931 + | antibiotic biosynthesis monooxygenase family protein gltX 1604031 - 1605545 + | glutamyl-tRNA synthetase TERM 2193 1605607 - 1605569 - T 83 -4.4 -5.28176 | overlap 1605570 1605571 TTTATCGACAAAAAA TCCGGGGTGTTCGGCAAA TTT TTTGCTTGACACCCCGCC CACACCTGCATAGAA TERM 2194 1605605 - 1605571 - T 74 -11.4 -2.84986 | overlap 1605570 1605569 TATCGACAAAAAATC CGGGGTGTTCGGCAAA TTT TTTGCTTGACACCCCG CCCACACCTGCATAG TERM 2195 1605772 - 1605737 - T 87 -14.9 -2.84229 | opp_overlap 1605742, overlap 1605742 ATAGCTCCACCAAAT TAAAAGCCCGCGTAT TGAAAG ATACGCGGGCTTTTT GTTTTCTGGTTTTGC TERM 2196 1605767 - 1605742 - T 100 -14.8 -4.58773 | opp_overlap 1605742, overlap 1605737 TCCACCAAATTAAAA GCCCGCGTAT TGAAAG ATACGCGGGC TTTTTGTTTTCTGGT TERM 2197 1605742 - 1605767 + T 100 -15.5 -5.56263 | opp_overlap 1605742 1605737 TCCACCAAATTAAAA GCCCGCGTATT GAAA GATACGCGGGC TTTTTGTTTTCTGGT CJA_1381 1606215 - 1605847 - | hypothetical protein CJA_1382 1607628 - 1606330 - | methyl-accepting chemotaxis protein TERM 2198 1607852 - 1607869 + G 79 -4.3 -4.90455 | CCTCTTTGTGCGGTG TAAAAAT ATGG ATTTTTA TTTTTGTCCATGTGT TERM 2199 1607886 - 1607898 + G 75 -4.8 -4.77438 | TTTTGTCCATGTGTT CCTC CAGCA GAGG TTTTTCATGGTGAAT TERM 2200 1607910 - 1607921 + G 71 -3 -4.8143 | overlap 1607902 GAGGTTTTTCATGGT GAAT TGGT ATTC TTTTTCAGTTATTAA CJA_1383 1607797 - 1607967 + | hypothetical protein CJA_1384 1608083 - 1609579 + | hypothetical protein TERM 2201 1609638 - 1609674 + G 81 -10.9 -3.60475 | opp_overlap 1609646, overlap 1609646 AGTTGCTTTGCGTGA CGATAAAAGGCCTGC CAGGTGT GCAGGCCTTTTTGCG TTTGCGATCGGGGTT TERM 2202 1609666 - 1609646 - g 93 -9.7 -4.46212 | opp_overlap 1609638 1609646 TGCGTGACGATAAAA GGCCTGC CAGGTGT GCAGGCC TTTTTGCGTTTGCGA TERM 2203 1609646 - 1609666 + G 100 -9.7 -4.81249 | opp_overlap 1609646, overlap 1609638 TGCGTGACGATAAAA GGCCTGC CAGGTGT GCAGGCC TTTTTGCGTTTGCGA TERM 2204 1609710 - 1609729 + G 77 -2.8 -5.1101 | TCGCTTGTCATAGGT TATCAGCG TTTC CTCTGGTA TTTTTTGCGTCGTCA CJA_1385 1609634 - 1610617 + | hypothetical protein CJA_1386 1611590 - 1610625 - | dihydrouridine synthase family protein CJA_1387 1611683 - 1613164 + | ATP-dependent RNA helicase, DEAD box family CJA_1388 1613475 - 1613576 + | hypothetical protein phoH 1613548 - 1614348 + | PhoH-like protein TERM 2205 1614388 - 1614369 - g 77 -12.1 -2.71364 | opp_overlap 1614369 CCATGGTGTTAACCA GGGGCGC GAAAAA GCGCCCC TTTTTATTGGATGAT TERM 2206 1614369 - 1614388 + G 100 -12.1 -5.11063 | opp_overlap 1614369 CCATGGTGTTAACCA GGGGCGC GAAAAA GCGCCCC TTTTTATTGGATGAT CJA_1390 1614332 - 1614442 + | hypothetical protein rrmA 1614494 - 1615354 + | rRNA guanine-N1-methyltransferase TERM 2207 1615503 - 1615541 + F 90 -12.9 -3.53444 | gap 1, opp_overlap 1615510, overlap 1615510 TGTGCCATGGAGCGG TGTGAAAGGTATAGAAAA CCAT TTTTCTATACCTTT-ACA TTTAAAAAGAAGTCG TERM 2208 1615510 - 1615535 + F 95 -12.1 -3.84451 | opp_overlap 1615510, overlap 1615503 TGGAGCGGTGTGAAA GGTATAGAAAA CCAT TTTTCTATACC TTTACATTTAAAAAG TERM 2209 1615535 - 1615510 - f 86 -12.1 -3.53811 | opp_overlap 1615510 1615503 TGGAGCGGTGTGAAA GGTATAGAAAA CCAT TTTTCTATACC TTTACATTTAAAAAG TERM 2210 1617239 - 1617259 + G 76 -12.5 -2.60212 | opp_overlap 1617238 1617239, overlap 1617238 TTCCGCTGTCCAAAG CGCGCGCTC AGC GGGTGCGCG ATTATGCAGTGCTCA CJA_1392 1615603 - 1617402 + | probable agglutination protein TERM 2211 1617812 - 1617855 + G 74 -11 -3.20345 | gap 1, opp_overlap 1617811 1617810, overlap 1617810 1617811 1617813 1617842 1617843 TCGCTGGATAATATC CGGGCAACGGCCAGGGTTG TCTTCCC CGAC-CTGGCCGATGCCCC TGTTGATATGGCATT TERM 2212 1617813 - 1617854 + G 89 -14.5 -2.51725 | gap 1, opp_overlap 1617811 1617810, overlap 1617810 1617812 1617811 1617842 1617843 CGCTGGATAATATCC GGGCAACGGCCAGGGTTG TCTTCCC CGAC-CTGGCCGATGCCC CTGTTGATATGGCAT TERM 2213 1619201 - 1619215 + G 79 -4.2 -5.03145 | ATCGGTTATGTCTCC CAGGAT GTG AACCTG TTTTTTGGCACCTTG CJA_1393 1617512 - 1619665 + | toxin secretion ATP-binding protein CJA_1394 1619665 - 1621110 + | HlyD-family secretion protein TERM 2214 1621413 - 1621427 + G 73 -11.4 -2.70932 | overlap 1621415 GTTGCCAGTGTGGTG GAGGCC GGT GGCCTC TGGTTGGGCGCAGAC CJA_1395 1621107 - 1621697 + | putative two-component response regulator TERM 2215 1622263 - 1622236 - g 73 -12 -2.79302 | gap 1 ACGAGTTGGAGGAGA CTGCCGC-GGGTG AAT CATCCGGCGGCAG CGGCAATGAAGGCGG CJA_1396 1621911 - 1629059 + | putative hemolysin CJA_1397 1629078 - 1629440 + | hypothetical protein TERM 2216 1629440 - 1629471 + T 70 -10 -3.06796 | overlap 1629443 1629466 1629468 CAGCTTAATCCTTTA ACGCTGGCCCTAGC GAAC GCCGGGGCCAGTGA TTGCATCCAATCCCA TERM 2217 1629443 - 1629468 + T 78 -12.5 -2.75382 | overlap 1629440 1629466 CTTAATCCTTTAACG CTGGCCCTAGC GAAC GCCGGGGCCAG TGATTGCATCCAATC CJA_1398 1631350 - 1629449 - | EAL domain protein CJA_1399 1632120 - 1631353 - | hypothetical protein CJA_1400 1634320 - 1632245 - | GGDEF domain protein TERM 2218 1632642 - 1632625 - G 71 -2.6 -4.9218 | CATCGATCACAAAAA CGCCGA AATGGG TCGCCG GGTTATTATTGTTAA CJA_1401 1635599 - 1634343 - | Bacterial extracellular solute-binding protein domain protein TERM 2219 1634515 - 1634534 + g 70 -4.2 -4.61199 | overlap 1634516 CAGATAAACGTCATT TCCTTGTC GGCG GGCAGGGG TTTTGTATCTGCCAT TERM 2220 1634546 - 1634560 + g 82 -2.1 -5.45726 | GGGGTTTTGTATCTG CCATT AATTC GATGG TTTTTTTCAGGTATC TERM 2221 1634637 - 1634648 + g 73 -3.6 -4.87665 | AATGGCACCACTCAA TGCC CAGA GGCG TTTTTGTACATCCGG TERM 2222 1635066 - 1635083 + g 74 -2.7 -5.0133 | gap 1 CTCATCAAAACTCCA GGCAATGG TGT CTAT-GCC TTTTTTAGCCAGCTC amy13C 1635938 - 1638154 + | alpha amylase, putative, amy13C TERM 2223 1638199 - 1638224 + F 86 -4.7 -5.53436 | gap 1, opp_overlap 1638199 TGAGTGATCAAAAAA CCAGGGTGTC TTTAATC GGC-CCCTGG TTTTTTATGTTCTAT TERM 2224 1638224 - 1638199 - f 73 -2.5 -5.1675 | gap 1, opp_overlap 1638199 TGAGTGATCAAAAAA CCAGGGTGTC TTTAATC GGC-CCCTGG TTTTTTATGTTCTAT TERM 2225 1639024 - 1639036 + G 100 -4.8 -6.13503 | overlap 1639027 GGCATTGGACCTGTT GGGT AAAAA ACCC TTTTTTTTATTGGTA TERM 2226 1639549 - 1639572 + G 74 -7.4 -4.13304 | GGATGTACAGGTTTT TGCCTATGGC AAAG GCCATGAGCA TTTTGCCGGTAATTT CJA_1403 1638287 - 1639636 + | alkaline phosphatase III CJA_1404 1641753 - 1639642 - | oxidoreductase alpha (molybdopterin) subunit TERM 2227 1641430 - 1641404 - G 100 -7.8 -5.55695 | opp_overlap 1641422, overlap 1641406 GAAGAATAGAAAAAA CTGCGCCCTGCC GAT GTCCGGGCGAAG GCGCGCGTCATTTTA CJA_1405 1641794 - 1641982 + | regulator protein PecM TERM 2228 1642168 - 1642154 - g 85 -11.4 -3.57792 | CCACCCATTGGGAAA CCCTGG CGT CCAGGG CCTTGGCGTACCTGC TERM 2229 1642458 - 1642423 - g 73 -9 -3.5764 | gap 1, overlap 1642424 AAGGCGATCCTCAAA CGCACCCGCCAG-GTGG GGG CGACGCTGGCAAGTGCA GCAGCGGATGTGCAG CJA_1406 1642054 - 1642776 + | two-component response regulator CreB TERM 2230 1643120 - 1643100 - g 72 -6.7 -4.1899 | opp_overlap 1643101 1643102, overlap 1643102 TTATTGGATTCAAAA CACCTGGCC GTT GGCCAGGAT TATTCGCGCTGGAAC TERM 2231 1643101 - 1643119 + G 77 -10.2 -3.63515 | opp_overlap 1643100 1643102, overlap 1643102 TATTGGATTCAAAAC ACCTGGCC GTT GGCCAGGA TTATTCGCGCTGGAA TERM 2232 1643102 - 1643118 + G 85 -13.7 -2.77895 | opp_overlap 1643102 1643100, overlap 1643101 ATTGGATTCAAAACA CCTGGCC GTT GGCCAGG ATTATTCGCGCTGGA TERM 2233 1643118 - 1643102 - g 100 -13.7 -3.69483 | opp_overlap 1643101 1643102, overlap 1643100 ATTGGATTCAAAACA CCTGGCC GTT GGCCAGG ATTATTCGCGCTGGA creC 1642773 - 1644200 + | two-component sensor CreC TERM 2234 1644270 - 1644245 - f 71 -6.8 -4.10007 | opp_overlap 1644245, overlap 1644246 1644261 ACAAGCGCGTGAAAA TGCTCCCTGA ATATCA CCAGGGAGCC TGCTATGAAACATCC TERM 2235 1644269 - 1644246 - f 73 -10.3 -3.05522 | opp_overlap 1644245, overlap 1644245 1644261 CAAGCGCGTGAAAAT GCTCCCTGA ATATCA CCAGGGAGC CTGCTATGAAACATC TERM 2236 1644583 - 1644605 + G 90 -12 -3.89346 | opp_overlap 1644582 TAATAGTGAGATGAG TACCGAGCTG CGC CAGCGCGGTA TTTATAAGGTCAACC creD 1644275 - 1645621 + | inner membrane protein CreD TERM 2237 1645836 - 1645853 + T 100 -10.5 -5.41143 | opp_overlap 1645836 CGTTGATAGCAAAAA GCCGGCG TTGA TGCCGGC TTTTTTTAGGAAGTG TERM 2238 1645853 - 1645836 - T 100 -9.8 -4.8048 | opp_overlap 1645836 CGTTGATAGCAAAAA GCCGGC GTTGAT GCCGGC TTTTTTTAGGAAGTG CJA_1409 1646907 - 1645888 - | oxidoreductase, aldo/keto reductase family CJA_1410 1647418 - 1647008 - | hypothetical protein TERM 2239 1647175 - 1647188 + g 82 -8.1 -4.56597 | overlap 1647169 CGAGGATGACCAGGG CCAGG CTTT CCTGG TTTTTAGCAACGGCA TERM 2240 1647474 - 1647484 + H 72 -5.4 -4.38712 | ATGGTGTTTTGGCGG CAGT GGC ACTG TTTTCTCGCCATGAC CJA_1411 1647591 - 1648832 + | Short-chain alcohol dehydrogenase superfamily TERM 2241 1648879 - 1648851 - f 74 -10.4 -3.14026 | opp_overlap 1648853 1648859, overlap 1648853 1648859 GATACCGACAGGCAA TACAAAAAGCCC CCCGT GGGCTTTTTGTT TTTGAGGCGCGATAG TERM 2242 1648853 - 1648877 + F 100 -13 -4.56775 | opp_overlap 1648851 1648853 1648859, overlap 1648859 TACCGACAGGCAATA CAAAAAGCCC CCCGT GGGCTTTTTG TTTTTGAGGCGCGAT TERM 2243 1648877 - 1648853 - f 83 -13 -3.12803 | opp_overlap 1648853 1648859, overlap 1648851 1648859 TACCGACAGGCAATA CAAAAAGCCC CCCGT GGGCTTTTTG TTTTTGAGGCGCGAT TERM 2244 1648859 - 1648871 + F 91 -6.2 -5.61881 | opp_overlap 1648853 1648851 1648859, overlap 1648853 CAGGCAATACAAAAA GCCC CCCGT GGGC TTTTTGTTTTTGAGG TERM 2245 1648871 - 1648859 - f 85 -6.2 -5.10767 | opp_overlap 1648859 1648853, overlap 1648853 1648851 CAGGCAATACAAAAA GCCC CCCGT GGGC TTTTTGTTTTTGAGG CJA_1412 1648897 - 1649802 + | acyltransferase family protein CJA_1413 1649913 - 1650137 + | hypothetical protein TERM 2246 1650156 - 1650183 + F 100 -20 -4.90525 | opp_overlap 1650140 CCTCCTATCCGTCAA CGGCCAGCCATA GCCC TATGGCTGGCCG TTTTCTTTAGAATTC CJA_1414 1650364 - 1651143 + | putative outer membrane protein TERM 2247 1651164 - 1651187 + F 76 -7.4 -4.35518 | AAGGTCTCCAACCCG GGCGGGCA GCGTATAA TGTCCGCC TTTTAATATCGCCTT CJA_1415 1651218 - 1652135 + | lipid A biosynthesis lauroyl acyltransferase TERM 2248 1652187 - 1652208 + T 100 -12.3 -5.61596 | opp_overlap 1652187 ATATATCTGCCGAAA CAGTCCGCA GTAA TGCGGGCTG TTTTTTTATGAGCCT TERM 2249 1652208 - 1652187 - T 75 -10.1 -3.5525 | opp_overlap 1652187 ATATATCTGCCGAAA CAGTCCGCA GTAA TGCGGGCTG TTTTTTTATGAGCCT TERM 2250 1652557 - 1652510 - T 100 -10.1 -4.87893 | opp_overlap 1652516, overlap 1652511 AATCTCAATCAAAAA CTTAGACGGAAACTTTCCG GGATGTTATA CGGAAACTTTCCGTCTAAT AACAATGTTAGCTTG TERM 2251 1652556 - 1652511 - T 93 -13.6 -3.51651 | opp_overlap 1652516, overlap 1652510 ATCTCAATCAAAAAC TTAGACGGAAACTTTCCG GGATGTTATA CGGAAACTTTCCGTCTAA TAACAATGTTAGCTT TERM 2252 1653077 - 1653127 + T 79 -9.2 -4.18197 | overlap 1653079 TATTTAAGTATTCTC CTTTTCTTGAAACAGAGCTTAT ATCTCTA ATGAGCGCTGCTTCAAGAAATG TTTTAAATGAAAGCT TERM 2253 1653079 - 1653125 + T 83 -10.4 -3.69216 | overlap 1653077 TTTAAGTATTCTCCT TTTCTTGAAACAGAGCTTAT ATCTCTA ATGAGCGCTGCTTCAAGAAA TGTTTTAAATGAAAG CJA_1416 1653390 - 1653154 - | hypothetical protein CJA_1417 1653472 - 1654008 + | hypothetical protein CJA_1418 1654071 - 1654175 + | hypothetical protein TERM 2254 1654363 - 1654394 + G 72 -7.3 -4.26076 | gap 1, opp_overlap 1654356 1654363 AAAGTACAGCAACGA TGGCGGTGGGCGTA CAGCT TACGACC-CTGCCA TTTTGCTCAAAATCA TERM 2255 1655301 - 1655314 + G 85 -6.7 -4.87389 | GAGTAAAAGGCGTTA TTCCG GCCT CGGAA TTTATTTTTGACCTG CJA_1419 1654208 - 1655764 + | Transposase IS4 family TERM 2256 1656419 - 1656444 + G 76 -7.6 -4.23758 | opp_overlap 1656419 ATTCCTTTTGAAAAA CCATCAAGTG AACGAA CTCTTGATGG TTTTAAGTATGCCAT TERM 2257 1656444 - 1656419 - g 82 -7.6 -4.56775 | opp_overlap 1656419 ATTCCTTTTGAAAAA CCATCAAGTG AACGAA CTCTTGATGG TTTTAAGTATGCCAT CJA_1420 1655933 - 1656775 + | hypothetical protein CJA_1421 1657579 - 1656785 - | IS3 family element, transposase orfB CJA_1422 1659029 - 1657839 - | relative of glycosyl transferase family GT1, gt*A CJA_1423 1659899 - 1659042 - | hypothetical protein CJA_1424 1660182 - 1660928 + | SapC family protein TERM 2258 1660934 - 1660982 + F 86 -14.8 -2.73474 | gap 1, opp_overlap 1660951, overlap 1660951 GCCTGCCTGATTGCA TTGCCAGCCATAAAAAAGCCCGC ATAT GCGGGCTTTTTTATGGA-GTCGA GTTCTCATTATCAGG TERM 2259 1660966 - 1660951 - g 100 -11.8 -5.28176 | opp_overlap 1660934 1660951 GCCAGCCATAAAAAA GCCCGC ATAT GCGGGC TTTTTTATGGAGTCG TERM 2260 1660951 - 1660966 + G 100 -11.8 -5.26316 | opp_overlap 1660951, overlap 1660934 GCCAGCCATAAAAAA GCCCGC ATAT GCGGGC TTTTTTATGGAGTCG CJA_1425 1660934 - 1661032 + | hypothetical protein CJA_1426 1661350 - 1661036 - | putative sigma 54 modulation protein CJA_1427 1662415 - 1661561 - | transposase CJA_1428 1662711 - 1662412 - | transposase CJA_1429 1662869 - 1663798 + | conserved hypothetical protein TIGR01777 CJA_1430 1663946 - 1664425 + | 16 kDa heat shock protein A TERM 2261 1664445 - 1664470 + T 100 -17.7 -5.53991 | opp_overlap 1664445 1664450, overlap 1664450 TGTAGCCAATTAAAA CAAAACCCCGC CAGT GCGGGGTTTTG TTTTTTTAATCAGTC TERM 2262 1664470 - 1664445 - T 100 -17.7 -4.43477 | opp_overlap 1664445 1664450, overlap 1664450 TGTAGCCAATTAAAA CAAAACCCCGC CAGT GCGGGGTTTTG TTTTTTTAATCAGTC TERM 2263 1664465 - 1664450 - T 100 -11.8 -5.18643 | opp_overlap 1664445 1664450, overlap 1664445 CCAATTAAAACAAAA CCCCGC CAGT GCGGGG TTTTGTTTTTTTAAT TERM 2264 1664450 - 1664465 + T 100 -11.8 -5.57888 | opp_overlap 1664450 1664445, overlap 1664445 CCAATTAAAACAAAA CCCCGC CAGT GCGGGG TTTTGTTTTTTTAAT CJA_1431 1665483 - 1664476 - | transcriptional regulator, AraC family TERM 2265 1664591 - 1664621 + g 95 -12.6 -4.08767 | opp_overlap 1664598, overlap 1664592 TGGTATCCGATTTTA TCAGCAATCTCCCC CAG GGAGAGGTTGCTGG TTTTCAGCAGGTCGC TERM 2266 1664592 - 1664620 + g 87 -13.9 -3.05046 | opp_overlap 1664598, overlap 1664591 GGTATCCGATTTTAT CAGCAATCTCCCC CAG GGAGAGGTTGCTG GTTTTCAGCAGGTCG TERM 2267 1664612 - 1664598 - G 70 -10 -3.21747 | opp_overlap 1664592 1664591 CGATTTTATCAGCAA TCTCCC CCA GGGAGA GGTTGCTGGTTTTCA CJA_1432 1665609 - 1667525 + | probable beta-ketoacyl synthase rpsP 1667659 - 1667952 + | ribosomal protein S16 rimM 1667967 - 1668503 + | 16S rRNA processing protein RimM TERM 2268 1669217 - 1669184 - g 81 -9 -4.09739 | opp_overlap 1669174 1669173 CGAACCTGGCTAAAA CGGCCAGATTTACT GCAAGT AGTAAACCTAACCG AGGAACAGCGGGCGC trmD 1668500 - 1669276 + | tRNA (guanine-N1)-methyltransferase rplS 1669309 - 1669659 + | ribosomal protein L19 TERM 2269 1669683 - 1669715 + F 100 -20.7 -4.62069 | opp_overlap 1669688, overlap 1669688 TCCAAATCTGCTTCC CAAAAGGCCGGTGCA CAT TGCTCCGGCCTTTTG TTTTTGCAATGGAGA TERM 2270 1669710 - 1669688 - f 100 -14.8 -4.07687 | opp_overlap 1669683 1669688 ATCTGCTTCCCAAAA GGCCGGTGCA CAT TGCTCCGGCC TTTTGTTTTTGCAAT TERM 2271 1669688 - 1669710 + F 100 -14.8 -5.27023 | opp_overlap 1669688, overlap 1669683 ATCTGCTTCCCAAAA GGCCGGTGCA CAT TGCTCCGGCC TTTTGTTTTTGCAAT TERM 2272 1669943 - 1669961 + G 93 -8.8 -4.9448 | overlap 1669946 ATCAGCAACATCTTT CCAGCCGT TCA ACGGCTCG TTTTCTTTCCTGCCT xerD 1669735 - 1670634 + | tyrosine recombinase XerD dsbC 1670670 - 1671485 + | thiol:disulfide interchange protein DsbC TERM 2273 1671565 - 1671592 + F 100 -14.2 -5.71983 | overlap 1671563 ACCCCAATTGACACT GGTGGCCGCCAT GAGT ATGGTGGCCATC TTTTTTTGTAGTTGA hom 1671635 - 1672942 + | homoserine dehydrogenase TERM 2274 1673675 - 1673712 + G 90 -11.9 -3.97368 | gap 1, overlap 1673680 GTTTACTACTTTTAC GCCGGCCTGGCGTTGGGG GCG CCCCATCGTCCGGT-GGC TTTCTCGGTTCCCAC TERM 2275 1673680 - 1673708 + G 77 -12.3 -2.7204 | overlap 1673675 CTACTTTTACGCCGG CCTGGCGTTGGGG GCG CCCCATCGTCCGG TGGCTTTCTCGGTTC thrC 1672964 - 1674361 + | threonine synthase TERM 2276 1674383 - 1674407 + F 100 -12.9 -6.11229 | opp_overlap 1674378 1674383 GCCTGAATCACAAAA CGCTGTAAGGT GAA GCCTTGCAGCG TTTTTTTATTTTAGT TERM 2277 1674407 - 1674383 - f 90 -10 -4.5442 | opp_overlap 1674383, overlap 1674378 GCCTGAATCACAAAA CGCTGTAAGG TGAAG CCTTGCAGCG TTTTTTTATTTTAGT TERM 2278 1675041 - 1675023 - g 100 -10.2 -5.05782 | overlap 1675025 1675036 ATCGAGCTGAAAAAA CAGGCGGC CAA GACGCCTG AGCTGGCCGCCCTGG TERM 2279 1675052 - 1675025 - g 82 -9 -4.15748 | overlap 1675023 1675036 CGAGCTGAAAAAACA GGCGGCCAAGAC GCCT GAGCTGGCCGCC CTGGAAGCGGCCCAC CJA_1441 1674447 - 1675295 + | thioredoxin-like protein CJA_1442 1675573 - 1676373 + | hypothetical protein TERM 2280 1676445 - 1676470 + T 86 -11.9 -3.59315 | TACGTCCATGTAGCT CCCTCGCGT CCTCCCTT ACGCGAGGG TTTCGAAATACTTAC CJA_1443 1677463 - 1676525 - | predicted GTPase TERM 2281 1677021 - 1677036 + g 74 -7.5 -4.11692 | TGGGCCTTGGTGACG CCGGC TTCGTT GCCGG TTTTGGCAATGACTC CJA_1444 1677787 - 1677470 - | hypothetical protein TERM 2282 1678132 - 1678155 + G 74 -5.8 -4.57755 | overlap 1678134 TCCGATAAGCTCCGG GACCGCCGCC CCCT GGTGGCAGCC TTTTGTGTGCTGGGT CJA_1446 1677916 - 1679124 + | Sugar efflux transporter A CJA_1445 1679767 - 1679105 - | hypothetical protein TERM 2283 1679377 - 1679399 + g 79 -10.4 -3.71848 | CGCCCGTGGCCTTGG CCAGGGGGCG GTG CGCGCCCAGG TTGTTACTCAGGGCC holC 1680204 - 1679785 - | DNA polymerase III, chi subunit TERM 2284 1680148 - 1680170 + g 100 -14.2 -3.60098 | opp_overlap 1680148 1680151, overlap 1680151 CAAACGACAGGCAAA CAACCAGCGG GCT TCGCTGGTTG TTTCGGGTAACACGT TERM 2285 1680170 - 1680148 - G 100 -13.5 -3.75229 | opp_overlap 1680148 1680151, overlap 1680151 CAAACGACAGGCAAA CAACCAGCG GGCTT CGCTGGTTG TTTCGGGTAACACGT TERM 2286 1680151 - 1680167 + g 81 -10.1 -3.9392 | opp_overlap 1680148 1680151, overlap 1680148 ACGACAGGCAAACAA CCAGCGG GCT TCGCTGG TTGTTTCGGGTAACA TERM 2287 1680167 - 1680151 - G 78 -9.4 -3.99315 | opp_overlap 1680151 1680148, overlap 1680148 ACGACAGGCAAACAA CCAGCG GGCTT CGCTGG TTGTTTCGGGTAACA CJA_1448 1681817 - 1680228 - | cytosol aminopeptidase TERM 2288 1680392 - 1680372 - G 70 -11.1 -2.77899 | overlap 1680369 GCGTGCCAGGAAGCA GGCGGCAGT GAT ACTGCCGGC CTCACGGCCACCCAC TERM 2289 1681941 - 1681960 + H 71 -10.6 -2.74523 | opp_overlap 1681931, overlap 1681948 ATAATGCCACACTTT GCGCGGGC CATG GCCCGCCC TGGTATTAAAAATAC TERM 2290 1682935 - 1682947 + G 71 -10.5 -2.88861 | opp_overlap 1682932 1682933 1682928 GAGCAAAACCAACCC GCGCC AGG GGCGC TATCTGAAGATGCTG CJA_1449 1682057 - 1683157 + | putative permease, YjgP/YjgQ family superfamily TERM 2291 1683447 - 1683467 + G 72 -5.3 -4.49838 | opp_overlap 1683443 1683438 GTGAAACGAATCGCC TGGATGGCG TTG CGCCCTGCA TTTGTGTTTATTGTT CJA_1450 1683150 - 1684208 + | putative permease, YjgP/YjgQ family CJA_1451 1684709 - 1684233 - | putative RDD family CJA_1452 1685621 - 1684725 - | hypothetical protein CJA_1453 1685722 - 1685618 - | hypothetical protein TERM 2292 1685757 - 1685725 - H 76 -7.9 -4.36914 | gap 1, opp_overlap 1685732, overlap 1685732 TGCTGTCGGACAAAA CAAAAAAGGCCTGC GTATGT GCAAGCC-TTTTTG TTTGAATCTGTGGTT TERM 2293 1685732 - 1685751 + H 85 -5.6 -5.31519 | opp_overlap 1685725 1685732 GGACAAAACAAAAAA GGCCTGCG TATG TGCAAGCC TTTTTGTTTGAATCT TERM 2294 1685751 - 1685732 - H 100 -7.1 -5.86976 | opp_overlap 1685732, overlap 1685725 GGACAAAACAAAAAA GGCCTGC GTATGT GCAAGCC TTTTTGTTTGAATCT TERM 2295 1685905 - 1685919 + H 70 -5 -4.42238 | CGCATGTCAAACACT TAATGC ATC GCGTTA TTTTGCTTGGAATCA TERM 2296 1686540 - 1686506 - g 91 -11.5 -4.11216 | gap 2, opp_overlap 1686505 1686504 TGTCTACGGTGAAAA GCAGGGC-GCTGT-GGC CGC GCCTACAGCAGGCCTGC ACTTTGATGAACTGA queA 1685985 - 1687079 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tgt 1687122 - 1688258 + | queuine tRNA-ribosyltransferase TERM 2297 1688539 - 1688551 + G 71 -9.1 -3.53811 | CTCTATATTCCCGAT CCTGC GGT GCAGG TTTCCGGAGACTCCA secD 1688443 - 1690320 + | protein-export membrane protein SecD secF 1690333 - 1691496 + | protein-export membrane protein SecF TERM 2298 1691516 - 1691545 + G 100 -20.9 -3.86015 | opp_overlap 1691522, overlap 1691522 GTTGCCTGCCGTTGC CACAAACAGCGCC TTAG GGCGCTGTTTGTG TTTATGGCGCCAATA TERM 2299 1691539 - 1691522 - g 91 -12.7 -3.85698 | opp_overlap 1691516 1691522 TGCCGTTGCCACAAA CAGCGCC TTAG GGCGCTG TTTGTGTTTATGGCG TERM 2300 1691522 - 1691539 + G 100 -12.7 -4.40003 | opp_overlap 1691522, overlap 1691516 TGCCGTTGCCACAAA CAGCGCC TTAG GGCGCTG TTTGTGTTTATGGCG CJA_1460 1691483 - 1691647 + | hypothetical protein TERM 2301 1692765 - 1692791 + G 100 -14.4 -3.63341 | GAAAAATGATGGTTT CCCTGGAGCCCG TAT TGGTCTCCAGGG TTATTAAGGAGTGTT CJA_1461 1691666 - 1693672 + | two-component hybrid sensor and regulator cel5A 1694107 - 1696350 + | endo-1,4-beta glucanase, cel5A TERM 2302 1696383 - 1696403 + T 100 -14.7 -5.77632 | opp_overlap 1696383 CTTAGCATAAAAAAA CCGGGGCTT TTC AGGCCCCGG TTTTTTTATGGTTTT TERM 2303 1696403 - 1696383 - T 100 -12.5 -5.67063 | opp_overlap 1696383 CTTAGCATAAAAAAA CCGGGGCTT TTC AGGCCCCGG TTTTTTTATGGTTTT suhB 1697234 - 1696431 - | extragenic suppressor protein SuhB TERM 2304 1697131 - 1697121 - G 72 -6.8 -4.1552 | opp_overlap 1697121 CACTTCGGTAACAAA GTCG TTG CGAC TTTTGGTTTCGATGG TERM 2305 1697121 - 1697131 + g 77 -6.8 -4.56914 | opp_overlap 1697121 CACTTCGGTAACAAA GTCG TTG CGAC TTTTGGTTTCGATGG TERM 2306 1697300 - 1697289 - H 72 -5.8 -4.47707 | overlap 1697290 CTGCAGCAAAAAGAA GCCA GGAC TGGC GCAGTACCAGTGCAG TERM 2307 1698088 - 1698060 - g 70 -11 -2.82623 | opp_overlap 1698063, overlap 1698057 GGCCTTGGAGAATTA CTACCAGCACCT TGAGC AGGCGCTGGTTG ATCTCGGTTTTCTCG CJA_1464 1697479 - 1698339 + | RNA methyltransferase, TrmH family, group 1 TERM 2308 1698321 - 1698341 + F 76 -8.3 -4.07124 | AGCGCCGACAGAGGT GGATATTCC CAG GGAATAGCC TTTGTCTGGCTGGTC iscR 1698538 - 1699026 + | iron-sulfur cluster assembly transcription factor IscR CJA_1466 1699047 - 1700210 + | cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase ) TERM 2309 1700397 - 1700366 - g 74 -2.3 -5.06414 | gap 1, opp_overlap 1700372 TTCGGCCAAGAAAAA TGAGCCGC-AATGG TTGCT CGATTGGCGCCTCA AAGCCTTCAACGCCT sufB 1700238 - 1701674 + | FeS assembly protein SufB TERM 2310 1702123 - 1702107 - g 79 -10.1 -3.80858 | GTAGAATTTATGAAA CTGGCGC GCG ACGCCAG TAAAAAAGTCAGCCT TERM 2311 1702142 - 1702131 - g 81 -4.4 -5.15634 | overlap 1702135 GACGCCAGTAAAAAA GTCA GCCT TGAC CAGGCGTTCCTCAAG TERM 2312 1702311 - 1702330 + G 90 -7.8 -4.81212 | overlap 1702312 AATGGTGTTAATGCC ATGCGCTC ACCG GAGCGCAG TTTTATTGTGGTGAC TERM 2313 1702312 - 1702329 + G 82 -11.3 -3.48004 | overlap 1702311 ATGGTGTTAATGCCA TGCGCTC ACCG GAGCGCA GTTTTATTGTGGTGA sufC 1701726 - 1702490 + | FeS assembly ATPase SufC sufD 1702494 - 1703798 + | FeS assembly protein SufD CJA_1470 1703795 - 1705060 + | selenocysteine lyase TERM 2314 1705055 - 1705040 - f 78 -6.2 -4.65895 | GCGGCGATTGAAAAA GCAAAA ACTT TTTTGC TCTAGCGCTGAGGTG TERM 2315 1705121 - 1705109 - g 90 -9.1 -4.45068 | opp_overlap 1705111 1705112, overlap 1705111 ATCCCCAACAACAAA GCCTG CAG CAGGC GGTGCTGGTAACGCC CJA_1471 1705075 - 1705446 + | HesB protein CJA_1472 1705519 - 1706040 + | Domain of unknown function domain protein CJA_1473 1706715 - 1706086 - | transcriptional regulator, TetR family TERM 2316 1706784 - 1706818 + r 93 -15.1 -3.10409 | gap 1, overlap 1706773 ACATTCTAGGGGGTT GGCCGCTGT-ATCACC ACTG GGTGAAGACAGCGGCC TTACCTGGATTAATG acrB 1709974 - 1706828 - | AcrB/AcrD/AcrF family protein acrA 1711144 - 1709978 - | multidrug resistance protein TERM 2317 1711160 - 1711179 + H 74 -3.6 -5.06816 | ATAAGAATCTCCTGA TAGACTGA ATGT TCATTCTA TTTTTATTGGGGGCT TERM 2318 1711393 - 1711417 + G 91 -7.9 -5.09895 | opp_overlap 1711391 GCATAGAAGTAAGCG CTGAGGATATT GTC GATACCCTCAG TTTTTTCGATAGCTG CJA_1476 1711365 - 1711799 + | Fe-S metabolism associated domain protein TERM 2319 1711864 - 1711850 - f 87 -10 -4.21194 | opp_overlap 1711848 TGGCATCATGCAAAA TGCGCA TAA TGCGCA GCTTGCATATAAAAA TERM 2320 1711889 - 1711907 + F 100 -10.2 -4.78848 | opp_overlap 1711889 TAAAAATGGCGCAAA CCCGCGTA TAA TCCGCGGG TTTTGTATTTGGGGG TERM 2321 1711907 - 1711889 - f 79 -10.2 -3.61889 | opp_overlap 1711889 TAAAAATGGCGCAAA CCCGCGTA TAA TCCGCGGG TTTTGTATTTGGGGG TERM 2322 1712082 - 1712063 - g 70 -5 -4.57569 | opp_overlap 1712072, overlap 1712047 CGATGCGGTCAAAAA CAATCACA TCGG CGCGATTG TTGCCCGCTTTGAGA ndk 1712013 - 1712438 + | nucleotide diphosphate kinase TERM 2323 1712456 - 1712469 + F 73 -2.3 -5.2189 | CCGACCAGGTTAATC CAACC AGCA GGTAG TTTTTTAATGATTGA CJA_1478 1712477 - 1713685 + | radical SAM enzyme, Cfr family TERM 2324 1714221 - 1714204 - g 91 -9.1 -4.59853 | opp_overlap 1714204 1714203 GCAATTGGGCAAAAA GCAGCGC GCAC ACGCTGC CTTTGAACATGCAAC pilF 1713713 - 1714498 + | type IV pilus biogenesis protein PilF TERM 2325 1714533 - 1714504 - f 71 -7.8 -3.96216 | overlap 1714505 GGCCCACTGAAAGAA TTGGCCACTGTG TAAGTG CGCAGTGGCCAG TGATGAAGACTGGAT TERM 2326 1714532 - 1714505 - f 75 -11.3 -2.97408 | overlap 1714504 GCCCACTGAAAGAAT TGGCCACTGTG TAAGTG CGCAGTGGCCA GTGATGAAGACTGGA CJA_1480 1714554 - 1715498 + | putative DNA-binding protein TERM 2327 1716028 - 1716016 - g 70 -4.7 -4.52949 | opp_overlap 1716023, overlap 1716018 CCTGCAAAAAAAATA CGGGG AGC CCACG CCCGATGCGTTGGTT ispG 1715570 - 1716694 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 2328 1717030 - 1717018 - g 72 -7.7 -3.9941 | opp_overlap 1717022, overlap 1717022 TGCTTTATAATCAAA CACAG CGC CTGTG GTACATGGGGCCTAT hisS 1716717 - 1717988 + | histidyl-tRNA synthetase TERM 2329 1718031 - 1718019 - f 71 -10.5 -2.68761 | overlap 1718016 ATCATTATTAAACAT GGCGC AGA GCGCC GCGATCTAACTAGGA CJA_1483 1718054 - 1718755 + | hypothetical protein CJA_1484 1718752 - 1719981 + | PQQ enzyme repeat domain protein TERM 2330 1720003 - 1720033 + F 100 -21.2 -4.52345 | overlap 1720006 CATTGAATGCTTTCC CAAGCCGCCCGGAG AAA CTCCGGGCGGCTTA TTTCTTTCATCGTGT TERM 2331 1720006 - 1720030 + F 100 -22.9 -4.35958 | overlap 1720003 TGAATGCTTTCCCAA GCCGCCCGGAG AAA CTCCGGGCGGC TTATTTCTTTCATCG CJA_1485 1720107 - 1721507 + | GTP-binding protein EngA TERM 2332 1721657 - 1721682 + G 70 -9.7 -3.16475 | opp_overlap 1721650 GTTAATCATTGATGA CGATGCACTGG TTCG CCAGAGTATCG TTACCTATCTGCGTG CJA_1486 1721598 - 1722818 + | response regulator CJA_1487 1722815 - 1723297 + | anti-anti-sigma factor CJA_1488 1723798 - 1723340 - | hypothetical protein TERM 2333 1723775 - 1723741 - G 77 -11.5 -3.17075 | gap 1, opp_overlap 1723721, overlap 1723743 GCTGGTCCAAGCCAA GACCG-GCGTCACCTG TTTG CAGGTGACGCTCGATA AAACGCGCAAGCTTA TERM 2334 1723773 - 1723743 - G 89 -14.1 -3.14878 | gap 1, opp_overlap 1723721, overlap 1723741 TGGTCCAAGCCAAGA CCG-GCGTCACCTG TTTG CAGGTGACGCTCGA TAAAACGCGCAAGCT tal 1724744 - 1723788 - | transaldolase CJA_1490 1725938 - 1724913 - | tRNA-dihydrouridine synthase A TERM 2335 1725995 - 1725973 - H 86 -4.1 -5.4588 | opp_overlap 1725976 1725988, overlap 1725976 1725988 GAAAATCAGAAAAAA TAACCCGGA AAAAA TCCAGGTTC ATCAAAGCTGGCTTA TERM 2336 1725992 - 1725976 - H 78 -5.8 -4.75967 | opp_overlap 1725976 1725988, overlap 1725973 1725988 AATCAGAAAAAATAA CCCGGA AAAAA TCCAGG TTCATCAAAGCTGGC TERM 2337 1726308 - 1726283 - g 71 -2.5 -5.0133 | gap 1, opp_overlap 1726305, overlap 1726284 CAGGCCGCCAAAAAA TGTGCAGACCTG ATC CCGCTCTGC-CA CCCATTGGCTTTAAG moaC 1726076 - 1726567 + | molybdenum cofactor biosynthesis protein C moaDE 1726564 - 1726812 + | molybdenum cofactor biosynthesis protein D/E CJA_1493 1726815 - 1727270 + | molybdenum cofactor biosynthesis protein E TERM 2338 1727308 - 1727285 - T 100 -18.2 -4.19258 | opp_overlap 1727285 1727288, overlap 1727288 ACAGCCGATTGAAAA GAAGGGGCGC ATAA GCGCCCCTTC TGTCTGATCAGAGAT TERM 2339 1727285 - 1727308 + T 100 -18.2 -2.94218 | opp_overlap 1727285 1727288, overlap 1727288 ACAGCCGATTGAAAA GAAGGGGCGC ATAA GCGCCCCTTC TGTCTGATCAGAGAT TERM 2340 1727305 - 1727288 - T 100 -14.1 -4.21812 | opp_overlap 1727285 1727288, overlap 1727285 GCCGATTGAAAAGAA GGGGCGC ATAA GCGCCCC TTCTGTCTGATCAGA TERM 2341 1727288 - 1727305 + T 93 -14.1 -3.61902 | opp_overlap 1727288 1727285, overlap 1727285 GCCGATTGAAAAGAA GGGGCGC ATAA GCGCCCC TTCTGTCTGATCAGA CJA_1494 1728632 - 1727316 - | Glucose/galactose transporter TERM 2342 1728375 - 1728385 + g 85 -3.2 -5.40474 | GGCAACTGCACTGTT TTGG TAG CCGA TTTTTTTAACCAGAT TERM 2343 1728461 - 1728441 - G 77 -6.1 -4.71382 | ATAAGCACCGAAAAA GCAAAACTG CAC CAGCATTGC CTGGGTATAGCTGAG CJA_1495 1728881 - 1729987 + | transcriptional regulator, LacI family TERM 2344 1730029 - 1729988 - T 87 -11.1 -3.88603 | opp_overlap 1729992 1730001, overlap 1729990 1729991 1730001 ACCGACAAAAAGTAA CAGCCATAAAAAATGCACC TTGT GGTGCATTTTTTATGTTTA CCATTTTAAAAAGAT TERM 2345 1730027 - 1729990 - T 82 -11.5 -3.51785 | opp_overlap 1729992 1730001, overlap 1729988 1729991 1730001 CGACAAAAAGTAACA GCCATAAAAAATGCACC TTGT GGTGCATTTTTTATGTT TACCATTTTAAAAAG TERM 2346 1730026 - 1729991 - T 90 -15 -2.69987 | opp_overlap 1729992 1730001, overlap 1729990 1729988 1730001 GACAAAAAGTAACAG CCATAAAAAATGCACC TTGT GGTGCATTTTTTATGT TTACCATTTTAAAAA TERM 2347 1729992 - 1730025 + T 100 -18.5 -3.76413 | opp_overlap 1729991 1729990 1729988 1730001, overlap 1730001 ACAAAAAGTAACAGC CATAAAAAATGCACC TTGT GGTGCATTTTTTATG TTTACCATTTTAAAA TERM 2348 1730001 - 1730016 + T 100 -9 -5.56264 | opp_overlap 1729991 1729990 1729988 1730001, overlap 1729992 AACAGCCATAAAAAA TGCACC TTGT GGTGCA TTTTTTATGTTTACC TERM 2349 1730016 - 1730001 - T 100 -9 -5.30686 | opp_overlap 1730001 1729992, overlap 1729991 1729990 1729988 AACAGCCATAAAAAA TGCACC TTGT GGTGCA TTTTTTATGTTTACC glk 1731043 - 1730045 - | glucokinase TERM 2350 1730455 - 1730468 + g 74 -3.1 -5.00196 | CGGACAGGATATTTT CTATG GAAA CATGG TTTTGTTCTTTCAGC TERM 2351 1731193 - 1731170 - H 73 -11.2 -2.72344 | opp_overlap 1731174, overlap 1731174 GCTTATTGTGAACTA TCAATTGACA GCGC TGTCAATTGA TAGTAGCGTGCGCCA TERM 2352 1731959 - 1731969 + G 70 -6.8 -4.07595 | GGTTTGCAGGGTGAT GCTG ACA CAGC TTCTTTCCTGTCTAT TERM 2353 1732169 - 1732155 - g 75 -11.4 -3.01712 | TGGCTTCCTTTAATA GCTGGC ATG GCCAGC ATATGCACGGCCACC TERM 2354 1733014 - 1733054 + G 72 -8.4 -3.82202 | overlap 1733049 AGATGCTTTTGTTGT CATTTGGCAGC-CGGGCACC GAA GGTGCCGGCGTTGC-AGATG TTCTGTTTGCCCGTG cel3B 1731380 - 1733842 + | glucan 1,4-beta-glucosidase, putative, cel3B TERM 2355 1733872 - 1733890 + F 100 -8.8 -5.7827 | opp_overlap 1733872 GCTTCCTCTGTAAAA GCCGCC ATTTCCA GGCGGC TTTTTTCTTTGTGTT TERM 2356 1733890 - 1733872 - f 79 -8.8 -4.07568 | opp_overlap 1733872 GCTTCCTCTGTAAAA GCCGCC ATTTCCA GGCGGC TTTTTTCTTTGTGTT TERM 2357 1734035 - 1734066 + F 74 -5.4 -4.62471 | gap 1, opp_overlap 1734050, overlap 1734037 CAATCACCAATTGTG TGCGCAT-AAAAAAT AGC ATTTTTTGATGCGGA TTTTCTGTGTGAATT TERM 2358 1734809 - 1734797 - g 77 -6.3 -4.63218 | CTGTGGTGAATAAAA GTATC GTC GATAC CAGTATTACCTATGC CJA_1498 1734298 - 1735503 + | hypothetical protein TERM 2359 1735571 - 1735524 - T 100 -33.2 -4.85599 | opp_overlap 1735540, overlap 1735540 CGTATTGCAGAAAAA GCTTCCCATTAAAAAAGGCCGC AATT GCGGCCTTTTTTAATGGGAAGC CCCTGCCATTATTTG TERM 2360 1735555 - 1735540 - T 100 -11.8 -5.14563 | opp_overlap 1735540, overlap 1735524 CTTCCCATTAAAAAA GGCCGC AATT GCGGCC TTTTTTAATGGGAAG TERM 2361 1735540 - 1735555 + T 100 -11.8 -5.14563 | opp_overlap 1735540 1735524 CTTCCCATTAAAAAA GGCCGC AATT GCGGCC TTTTTTAATGGGAAG gltA 1736860 - 1735580 - | citrate synthase I TERM 2362 1736512 - 1736527 + g 74 -2.6 -5.15969 | gap 1, overlap 1736514 GGTTGGCAACTGAGG CA-TCGA CAG TCGAGTG TTTTTTGACTTCGGC CJA_1500 1737045 - 1737167 + | hypothetical protein TERM 2363 1737376 - 1737388 + F 73 -7.7 -4.07124 | overlap 1737374 GTGCCTCATTTATTG CGCAT TGC ATGCG TTTATCTGGGTCATA CJA_1501 1737437 - 1737823 + | Succinate dehydrogenase cytochrome b subunit TERM 2364 1737996 - 1738006 + G 72 -6.8 -4.18294 | GTGGATGCGCGTCTT CAGC CTT GCTG TTCTTCTTTCCTTTA CJA_1502 1737817 - 1738188 + | succinate dehydrogenase hydrophobic membrane anchor protein sdhA 1738188 - 1739960 + | succinate dehydrogenase, flavoprotein subunit sdhB 1739975 - 1740679 + | succinate dehydrogenase, iron-sulfur protein TERM 2365 1740687 - 1740669 - f 72 -10.2 -2.87683 | opp_overlap 1740669 ACATGTTGTTACAGA GCGCTACC TAA GGTGGCGC TTTTCTGTATTTGAA TERM 2366 1740669 - 1740687 + F 100 -12.4 -4.74013 | opp_overlap 1740669 ACATGTTGTTACAGA GCGCTACC TAA GGTGGCGC TTTTCTGTATTTGAA TERM 2367 1740748 - 1740714 - f 84 -4.9 -5.42265 | gap 1, opp_overlap 1740742, overlap 1740716 TGAAACTACAAAAAA GATGCCTCGGGTGTGC TCTG GCACCCAGGAGGCA-C AAGCCTGTTGGTCGC TERM 2368 1740747 - 1740716 - f 79 -8.6 -4.32919 | opp_overlap 1740742, overlap 1740714 AAACTACAAAAAAGA TGCCTCGGGTGTGC TCTG GCACCCAGGAGGCA CAAGCCTGTTGGTCG TERM 2369 1741172 - 1741156 - g 81 -6.5 -4.73613 | opp_overlap 1741155 1741144 1741141 CGAGCATGAACAAAA GCAGATC AAA GTTCTGC AGTTGATCAGCTCCT TERM 2370 1742037 - 1742019 - g 72 -8.1 -3.95219 | overlap 1742010 TCCAAATGTCACAAA CCCGTGC TTATG GCACAGG CGGTACCCTGCATAT sucA 1740878 - 1743709 + | 2-oxoglutarate dehydrogenase, E1 component TERM 2371 1743714 - 1743694 - f 77 -11.2 -3.28791 | opp_overlap 1743708 ACGTTTTGTTGATAA GGCACTCA GTGTT TGAGTGCC ACACCCTATTAAACC sucB 1743769 - 1744965 + | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase TERM 2372 1744980 - 1745001 + F 100 -8.7 -5.22312 | opp_overlap 1744980 AAACGGCTTTTGAAA CGCTCTTGG CAAC CTGAGAGCG TTTTTTCATGTAAAT CJA_1507 1745069 - 1746508 + | dihydrolipoamide dehydrogenase TERM 2373 1746863 - 1746853 - g 77 -6.8 -4.56597 | opp_overlap 1746854 1746855 1746861, overlap 1746854 1746855 GCCTTCGCCGAAAAA TGGC TGG GCCA GCGTTTGGTGACTTA sucC 1746583 - 1747794 + | succinyl-CoA synthetase beta chain CJA_1510 1747805 - 1748677 + | succinyl-CoA synthetase alpha chain CJA_1509 1748792 - 1748664 - | hypothetical protein TERM 2374 1748706 - 1748723 + g 100 -11.3 -5.46657 | opp_overlap 1748706 GTTTCTGTTAAAAAA GGCGATC TCCG GATCGCC TTTTTTATTGGCATG TERM 2375 1748723 - 1748706 - G 100 -11.3 -5.00616 | opp_overlap 1748706 GTTTCTGTTAAAAAA GGCGATC TCCG GATCGCC TTTTTTATTGGCATG TERM 2376 1748865 - 1748881 + H 73 -10.9 -2.54841 | opp_overlap 1748865, overlap 1748864 1748862 TGTATGGCTAATAAA CGCAGTA AAT TACTGCG CTATTGGTTAAAATT TERM 2377 1748881 - 1748865 - H 89 -10.9 -4.16842 | opp_overlap 1748865 1748864 1748862 TGTATGGCTAATAAA CGCAGTA AAT TACTGCG CTATTGGTTAAAATT speA 1749054 - 1750976 + | arginine decarboxylase TERM 2378 1751183 - 1751166 - g 70 -6.3 -4.25104 | gap 1, opp_overlap 1751165 GCCGCCCGATTAAAA CCGCA-CA GGT TGATGCGG ATAATGTGCCCGAGC TERM 2379 1751404 - 1751389 - g 73 -4 -4.84529 | gap 1, opp_overlap 1751389 GGATAAATTTAAAAA TGCCGGT ATT ACCG-CA TTGCTGGGTTCCGGT CJA_1512 1751009 - 1752208 + | saccharopine dehydrogenase TERM 2380 1752722 - 1752751 + G 79 -3.5 -5.02476 | gap 1, overlap 1752723 GATTCCGATTGCTTC CCTGGATGCTGCCA TTG TGGCTG-ATCCGGA TTTTTTGCAGGGTAT TERM 2381 1752975 - 1752950 - g 70 -3.9 -4.59773 | opp_overlap 1752950, overlap 1752952 TGCCATGCTGAAAAA CTTCCAGGCCA ATTA TGACCTGCAGG TATATCTGGAACCCG nspC 1752186 - 1753409 + | carboxynorspermidine decarboxylase CJA_1514 1755075 - 1753438 - | Na+/H+ antiporter TERM 2382 1754245 - 1754232 - G 73 -3.8 -4.80077 | opp_overlap 1754232 GCAAAATAAAAATAA TGCC ATTGAG GGCA GTTTGTACCGTATCC TERM 2383 1754821 - 1754805 - G 78 -9.3 -3.90045 | TAACAGTAAACACAA CCAGGCC AGT GGCCAGG GAAATAATGGTTTTC TERM 2384 1754869 - 1754852 - G 85 -3.3 -5.43866 | CAATCGCGAAAAAAA GCGCCCT TGGG AATGCGC CAGCCATCCAAAAAT TERM 2385 1754932 - 1754914 - G 76 -7.4 -4.17009 | opp_overlap 1754916, overlap 1754929 AAACAACAATAAGAA CAGGTGTG AAT CAAACCTG ACTTGAAAACCCAGC TERM 2386 1755173 - 1755199 + H 83 -6.7 -5.04082 | opp_overlap 1755158 1755171 1755173 CATAAAAATAATATA TTTTTTGATGC CGATT GCATCACAAAA TTTTCTTCTTGTTTA TERM 2387 1755637 - 1755624 - g 90 -4.5 -5.40072 | opp_overlap 1755624 1755625, overlap 1755625 TTTTGTTGAAAAAAA CCAGC CGCT GCTGA TTATAAATGGAGACA CJA_1515 1755295 - 1756599 + | putative membrane-fusion protein TERM 2388 1757585 - 1757599 + G 87 -5 -5.31275 | overlap 1757587 CGTAGTTATTTTATA TGCCTT GAT AAGGTA TTTTTTCTACTCCCC CJA_1516 1756599 - 1758752 + | putative toxin secretion ABC transporter, ATP-binding subunit/permease protein TERM 2389 1758895 - 1758912 + F 83 -6.3 -5.05113 | GAAGCGTTTTGTCTG CTTATCC TGTT GGATAGG TTTTATTTATGTAAA CJA_1517 1758944 - 1759198 + | hypothetical protein CJA_1518 1759277 - 1760113 + | hypothetical protein CJA_1519 1760161 - 1761012 + | hypothetical protein TERM 2390 1761420 - 1761407 - gf 88 -2.4 -5.4833 | TGATTTAATAAAAAA TCTC CCTTTT GAGA CAGATGGAATATTGG CJA_1520 1761060 - 1761911 + | hypothetical protein TERM 2391 1762074 - 1762060 - gf 70 -4.2 -4.72986 | opp_overlap 1762060 GAGTTCGATGAAAAA CTGTTC TTG GATCAG TTTGGTTACGCCGTG TERM 2392 1763162 - 1763187 + GF 84 -4.1 -5.22289 | gap 1, overlap 1763164 ATGTAAATCATGAAG TG-CTGTTTATC GAT GATAAGCGGTCA TTTTTATCTTTGATC CJA_1521 1761877 - 1763700 + | hypothetical protein TERM 2393 1763983 - 1763997 + F 79 -2.8 -5.36965 | TCATGTTAATTGCTT CCTC CCGTGCA GAGG TTTTTTATGCTCTTG TERM 2394 1764723 - 1764752 + G 100 -4.4 -5.5112 | gap 1 ATTATCTTCAGGATT TAGGCGTCAATAC TCTAT GTTTT-ACGCCTA TTTTTTCTTCATCGA amy13B 1764176 - 1765993 + | alpha amylase, putative, amy13B TERM 2395 1766025 - 1766046 + T 82 -3.1 -5.58074 | overlap 1766027 AATTTCGGTGGATTT TATATGAAT GAGA GTTCATATG TTTTTTTAATGGTTG TERM 2396 1766076 - 1766125 + T 70 -5.3 -4.42047 | overlap 1766086 GTTTTGATTTGGTCT TTTGGAATTGCCTTGAATTTTCT AAAT AAAAAATTCAAGGTAATTAAAGA TTATTATTTTTTGCT CJA_1523 1768269 - 1766437 - | ABC-type multidrug efflux pump TERM 2397 1768789 - 1768802 + G 100 -3.8 -5.69262 | CCCTGGGATTGTTAA CACC TTTTGT GGTG TTTTTCTTTTTCTGG CJA_1524 1768470 - 1768862 + | hypothetical protein CJA_1525 1768874 - 1769398 + | hypothetical protein TERM 2398 1769409 - 1769423 + T 100 -11.4 -5.23765 | opp_overlap 1769409 GTTAATAAACACAAA GCCGCT GAG AGCGGC TTTTTCTATTCTTTC TERM 2399 1769423 - 1769409 - T 95 -11.4 -4.46072 | opp_overlap 1769409 GTTAATAAACACAAA GCCGCT GAG AGCGGC TTTTTCTATTCTTTC CJA_1526 1770479 - 1769454 - | hypothetical protein CJA_1527 1771843 - 1770590 - | hypothetical protein TERM 2400 1771049 - 1771061 + g 72 -4.8 -4.66163 | GCCGGTGAGCAACTT CAGC CAGAT GCTG TTTTTCAATGCGGGT TERM 2401 1771922 - 1771957 + H 71 -6.8 -4.17132 | gap 1, opp_overlap 1771939, overlap 1771956 TCTATTGGCTCGCTT CGGCA-GGGCATACAAC AGC GCTGTAAGCCCCTGACG TTTGTTAAGCGCTTT TERM 2402 1772268 - 1772283 + H 79 -4 -5.19879 | overlap 1772269 CATGATGAATTTTTA TGAGAA ATGG TTCTCG TTTTTGTATTTCGCC nahO 1772441 - 1773454 + | acetaldehyde dehydrogenase TERM 2403 1773466 - 1773503 + T 100 -10.7 -5.00616 | gap 1, opp_overlap 1773477, overlap 1773467 1773473 1773477 TTGATTGATTTCAAA CTGT-GAATAAACCCCGC ATA GCGGGGTTTATTCTGCGC TTTTTTCCAGGAGCC TERM 2404 1773467 - 1773502 + T 93 -14.2 -3.60048 | gap 1, opp_overlap 1773477, overlap 1773466 1773473 1773477 TGATTGATTTCAAAC TGT-GAATAAACCCCGC ATA GCGGGGTTTATTCTGCG CTTTTTTCCAGGAGC TERM 2405 1773473 - 1773495 + T 100 -16.4 -3.4616 | opp_overlap 1773477, overlap 1773467 1773466 1773477 ATTTCAAACTGTGAA TAAACCCCGC ATA GCGGGGTTTA TTCTGCGCTTTTTTC TERM 2406 1773477 - 1773491 + T 95 -12.8 -4.33851 | opp_overlap 1773477, overlap 1773473 1773467 1773466 CAAACTGTGAATAAA CCCCGC ATA GCGGGG TTTATTCTGCGCTTT TERM 2407 1773491 - 1773477 - T 95 -12.8 -4.19371 | opp_overlap 1773477 1773473 1773467 1773466 CAAACTGTGAATAAA CCCCGC ATA GCGGGG TTTATTCTGCGCTTT CJA_1529 1774149 - 1773493 - | hypothetical protein TERM 2408 1773995 - 1774013 + g 79 -2.3 -5.26875 | CCTGATTCATAATGG CTAACCG GTTCG CGGCTGG TTTTTTGGTTGCAGG TERM 2409 1775100 - 1775088 - g 83 -6.2 -4.93296 | opp_overlap 1775095 TTACCAGCAGAAAAA GCCC TTGTG GGGC ATGCCCTATGGGTTG TERM 2410 1775715 - 1775736 + G 73 -3.7 -4.75372 | overlap 1775717 1775718 GGTTGCGCTGAATGT TATCCAGGA TCAT TTCTGGGTG TTTTTCCTCGATCCT CJA_1530 1774603 - 1776864 + | fatty acid cis/trans isomerase CJA_1531 1777739 - 1776873 - | hypothetical protein TERM 2411 1778433 - 1778402 - R 70 -10.2 -2.53213 | opp_overlap 1778403 1778411, overlap 1778409 1778411 GAAGTCTGTAAGTCA TTGAAAATAGGGGC TTTT GCCCCTTTTTTCAT TTCAGCAAAAGTGAC TERM 2412 1778403 - 1778432 + r 93 -13.7 -3.53444 | opp_overlap 1778402 1778409 1778411, overlap 1778411 AAGTCTGTAAGTCAT TGAAAATAGGGGC TTTT GCCCCTTTTTTCA TTTCAGCAAAAGTGA TERM 2413 1778426 - 1778409 - R 74 -6.9 -4.21275 | opp_overlap 1778403 1778411, overlap 1778402 1778411 GTAAGTCATTGAAAA TAGGGGC TTTT GCCCCTT TTTTCATTTCAGCAA TERM 2414 1778411 - 1778424 + r 100 -9.5 -5.37593 | opp_overlap 1778409 1778402 1778411, overlap 1778403 AAGTCATTGAAAATA GGGGC TTTT GCCCC TTTTTTCATTTCAGC TERM 2415 1778424 - 1778411 - R 79 -9.5 -3.70331 | opp_overlap 1778411 1778403, overlap 1778409 1778402 AAGTCATTGAAAATA GGGGC TTTT GCCCC TTTTTTCATTTCAGC CJA_1536 1778540 - 1778430 - | hypothetical protein CJA_1537 1779674 - 1778562 - | hypothetical protein CJA_1538 1783113 - 1779715 - | hypothetical protein TERM 2416 1780360 - 1780346 - G 72 -6.4 -4.38154 | opp_overlap 1780346 1780354 ACACGTTTGAGAAAA TCGTAC AGC GCACGA TGTTGTTCGACGGGC TERM 2417 1780831 - 1780863 + g 81 -6.1 -4.77036 | GTTGTACAGCGGATG CTGGCGGGTCTTGGC TTC GTCTAGCGCTGCCAG TTTTTGCTGCTCAAC TERM 2418 1781182 - 1781199 + g 78 -10.5 -3.54029 | opp_overlap 1781173, overlap 1781175 1781174 1781195 1781195 1781198 ATCAACCTGCGCCTT GGCGCGT TTCA GCGCGCC TTGTGCTTCATCAAG TERM 2419 1782036 - 1782059 + g 70 -6.6 -4.04295 | ACAGGTTGTTCAGTT CCTGGCGCGT GTTG GCGTGCTGGG TTTCCTTGTCCTTCA CJA_1539 1783723 - 1783124 - | hypothetical protein CJA_1540 1785210 - 1783723 - | hypothetical protein TERM 2420 1784380 - 1784393 + g 81 -4.5 -5.14626 | overlap 1784381 AAACTCGGCACGGAT TCGGT CACC ACCGG TTTTCTTTTCCTGAT CJA_1541 1786667 - 1785321 - | hypothetical protein CJA_1542 1786927 - 1786664 - | Putative transcriptional regulator TERM 2421 1787278 - 1787307 + r 100 -18.1 -3.71527 | opp_overlap 1787286, overlap 1787286 AATTCTGTAAGTCGT TGAAAAAAGGGGC TTTT GCCCCTTTTTTCA TTTCAGTCCTTCCAA TERM 2422 1787286 - 1787299 + r 100 -9.5 -5.38497 | opp_overlap 1787286, overlap 1787278 AAGTCGTTGAAAAAA GGGGC TTTT GCCCC TTTTTTCATTTCAGT TERM 2423 1787299 - 1787286 - R 100 -9.5 -5.01732 | opp_overlap 1787286 1787278 AAGTCGTTGAAAAAA GGGGC TTTT GCCCC TTTTTTCATTTCAGT CJA_1543 1788544 - 1787375 - | hypothetical protein TERM 2424 1788514 - 1788566 + g 79 -12.8 -3.04144 | gap 1, opp_overlap 1788528 CCAGGATTGTTCCGT CTCTCAGTGCAAGACCGGGCAGC CCGGCCAA GCTGCCCGGTG-TGCGCTCAGGG TGTTAAGCGTCCAGG TERM 2425 1788553 - 1788528 - G 93 -14.7 -3.05844 | opp_overlap 1788514 TCTCTCAGTGCAAGA CCGGGCAGCCC GGCC AAGCTGCCCGG TGTGCGCTCAGGGTG CJA_1544 1789492 - 1788569 - | dienelactone hydrolase domain protein CJA_1545 1789627 - 1790547 + | putative HTH-type transcriptional regulator YcjZ norB 1792945 - 1790708 - | nitric oxide reductase qNor type TERM 2426 1791927 - 1791909 - G 75 -4.4 -4.85782 | GGCGCTAAAAATAAA CCCGCTGC CAG GAAGCCGG TGGCAATCCAGAACA TERM 2427 1792886 - 1792861 - G 72 -7.6 -3.86015 | gap 1 GAGCCTGGCGATAAA CCT-CTCGGCC GAAAT AGCCGAGCAGG GAAAAGGTGACGATC CJA_1547 1793063 - 1793437 + | hypothetical protein TERM 2428 1793478 - 1793466 - f 80 -6.9 -4.63527 | overlap 1793467 GGATTACCTCAAAAA CGCGC TGT ACGCG CCAAGGAGACTGCCG TERM 2429 1793677 - 1793695 + G 70 -6.6 -4.08144 | GCTGTTCGGGTTTAC CTCGGCGG CAG TTGCCGGG TTTATCCTTACTGCG CJA_1548 1793507 - 1794670 + | NnrS protein superfamily TERM 2430 1794831 - 1794815 - g 81 -6.6 -4.59773 | TGGCATTTCCAAAAA CCACTT AATGA AAGTGG TGCAGGAGTTGAATA CJA_1549 1794654 - 1795136 + | rrf2 family protein CJA_1550 1797899 - 1795167 - | hypothetical protein CJA_1551 1800088 - 1797890 - | putative signaling protein CJA_1552 1800312 - 1801259 + | ABC transporter, ATP-binding protein CJA_1553 1801256 - 1802029 + | ABC-type multidrug transport system, permease component TERM 2431 1802029 - 1802006 - f 72 -6.6 -4.2828 | opp_overlap 1802006 1802009 CTCTATTTACTAAAA TCCGGCAAGC GTTT GCGTGCCTGA TGTCTGGGATTTTTG CJA_1554 1802064 - 1802888 + | GTP cyclohydrolase I family protein TERM 2432 1802919 - 1802931 + TF 72 -4.7 -4.64598 | TAACCTTGTCCTTCA GGCGC GCT GCGGC TTTTTCAAGTGATTC CJA_1555 1804278 - 1802896 - | probable adenylate cyclase TERM 2433 1803736 - 1803750 + gF 72 -7.8 -3.86015 | GTTTTCCAGTTGTTG CAGGCT CAT GGCCTG TTTGTGAAAACGCTG CJA_1556 1804382 - 1804275 - | hypothetical protein CJA_1557 1804257 - 1804418 + | hypothetical protein CJA_1558 1805667 - 1804420 - | hypothetical protein TERM 2434 1805910 - 1805898 - g 71 -9.1 -3.56092 | GTATCAGTCGCGAAA CTGGC TGA GCCAG GCCCCAGTATGGATC CJA_1559 1805853 - 1806410 + | nitroreductase family protein TERM 2435 1806534 - 1806521 - T 71 -9.5 -3.18274 | CCGAGCCGAAGGCAA CGCCC GAAG GGGCG GTACCGAGCACGCCG TERM 2436 1806962 - 1806934 - T 72 -10.4 -2.87564 | opp_overlap 1806939, overlap 1806939 CGAGTGCGCCATATA CAAAAGCCCATC CTTGT GATGGGCTTTTT CATTTCTGGTTAGCG TERM 2437 1806939 - 1806957 + T 100 -10.3 -5.05505 | opp_overlap 1806939 1806934 GCGCCATATACAAAA GCCCATC CTTGT GATGGGC TTTTTCATTTCTGGT TERM 2438 1806957 - 1806939 - T 93 -10.3 -4.60797 | opp_overlap 1806939, overlap 1806934 GCGCCATATACAAAA GCCCATC CTTGT GATGGGC TTTTTCATTTCTGGT CJA_1562 1807338 - 1806988 - | hypothetical protein TERM 2439 1807135 - 1807113 - G 86 -6.2 -5.03227 | overlap 1807114 AGAGTAGAAAGAAAA TCTGGGTACC TTC GTTACCCAGC CATAAACCCCACACA TERM 2440 1807134 - 1807114 - G 77 -9.7 -3.60309 | overlap 1807113 GAGTAGAAAGAAAAT CTGGGTACC TTC GTTACCCAG CCATAAACCCCACAC CJA_1563 1808396 - 1807398 - | Luciferase-like monooxygenase CJA_1564 1808761 - 1808585 - | hypothetical protein CJA_1565 1808775 - 1810925 + | hypothetical protein TERM 2441 1810954 - 1810976 + T 93 -7 -5.69793 | opp_overlap 1810954 ATGAGTATTAAAAAA GCGGACGT TAAACAT ATGTCCGC TTTTTTATTTAATAT TERM 2442 1810976 - 1810954 - T 81 -4.8 -5.19212 | opp_overlap 1810954 ATGAGTATTAAAAAA GCGGACGT TAAACAT ATGTCCGC TTTTTTATTTAATAT CJA_1566 1811451 - 1810993 - | putative lipoprotein TERM 2443 1811218 - 1811245 + g 83 -9.9 -4.07568 | gap 1, opp_overlap 1811210 1811209 CAAATATCGGCGCTG CCCGG-AAGGGC CGGAT GCTCTTACCGGG TTTTCGGCAGAGCCC CJA_1567 1812065 - 1811646 - | hypothetical protein TERM 2444 1812241 - 1812195 - R 100 -11.7 -5.95286 | ATCAAAAATAAAAAA CCGCTATTCAGCCCCACCAGA AAACA TCTGACAAAGCTCAATAGCGG TTCAGGTTTATTCAC nrdB 1813619 - 1812330 - | ribonucleoside reductase, beta subunit TERM 2445 1813335 - 1813361 + g 81 -10.8 -3.61398 | overlap 1813342 GCGCTTGTCATCGAC CTGGATACGGGC GGC GCCCATTTCCAG TTCTTCGAGGCCGGG TERM 2446 1813728 - 1813752 + r 81 -12.2 -3.21993 | opp_overlap 1813742, overlap 1813724 1813730 ATTACCCGGAATGTT TAGCAGCGCA TTAAC TGCGCTGCTG TTACCTGTTGTACCT TERM 2447 1813730 - 1813750 + r 81 -12.6 -3.16961 | opp_overlap 1813742, overlap 1813728 1813724 TACCCGGAATGTTTA GCAGCGCA TTAAC TGCGCTGC TGTTACCTGTTGTAC nrdA 1816707 - 1813771 - | ribonucleoside reductase, large chain TERM 2448 1813826 - 1813845 + g 72 -8.6 -3.72231 | gap 1 GCTTTGGGTACCGGT GCC-GCTTC GGC GAAGCTGGC TTCTTCAATGTCTGC TERM 2449 1815683 - 1815697 + g 72 -8.5 -3.71284 | opp_overlap 1815661 1815659, overlap 1815663 CGATAGAATTCGATC GCGCG CTCTT CGCGC TTGTCTTCCTGCAGG TERM 2450 1817161 - 1817150 - R 79 -4.4 -5.14563 | GGCCGGACTAAAAAA CCTA TATC TAGG GGTTTGGCGCGAATG TERM 2451 1817498 - 1817483 - R 88 -8.2 -4.90869 | AGGAGGAACGAAAAA GGGGCC TTGC AGCCCC AGCAGATATGTCGCT CJA_1570 1819584 - 1817548 - | Tat (twin-arginine translocation) pathway signal sequence domain protein TERM 2452 1817991 - 1818001 + g 70 -6.8 -4.07568 | CCCAGTTGAAGCTGG TGCC ATT GGCA TTTTCACGCCAACGG TERM 2453 1819841 - 1819858 + G 82 -9.1 -4.15044 | CGATTATTCCGTGTA TCGCCGG GTGA TCGGCGA TTTATTGAGCGGCAA CJA_1571 1819788 - 1820663 + | hypothetical protein TERM 2454 1821138 - 1821119 - g 70 -10.6 -2.76696 | overlap 1821118 TCTGCCTCCAACAAT GCGCCGGC AACT GCCCGCGC TACCAGCCAACTGGG TERM 2455 1822368 - 1822382 + G 74 -10 -3.51202 | opp_overlap 1822360 1822368, overlap 1822364 AAAAGGATTATCCAA CCACCT TGC AGGTGG TTAATTCCTTTAATG CJA_1572 1821023 - 1823842 + | putative TonB dependent receptor TERM 2456 1823887 - 1823865 - f 83 -13.4 -3.25823 | opp_overlap 1823865 TCTTTGTGACAGTAA CTCCGCCGGA TAT TTCGGCGGAG TTTTTTGCTTTTTAG TERM 2457 1823865 - 1823887 + F 100 -15.6 -5.54079 | opp_overlap 1823865 TCTTTGTGACAGTAA CTCCGCCGGA TAT TTCGGCGGAG TTTTTTGCTTTTTAG CJA_1573 1823913 - 1825301 + | Ser/Thr protein phosphatase family protein family TERM 2458 1825538 - 1825509 - g 72 -4.3 -4.72986 | gap 2, overlap 1825510 TAGTTTGATGAAAAA CCTGGTTGCCGAC TTCCAG GCCGGCA-CC-GG CATTCGCGTCAACCT TERM 2459 1825742 - 1825763 + G 71 -10.9 -2.85351 | gap 1, overlap 1825746 CCCCCAGCTACATTG CCCAA-GCGG TAT CCGCATTGGG TATCGTCTGGAACCG CJA_1574 1825438 - 1826349 + | ABC transporter substrate binding protein TERM 2460 1826431 - 1826409 - T 70 -9 -3.34895 | opp_overlap 1826402, overlap 1826410 TGTAGTGTTAAGCAA TGGGGACCCG TTT CTGGTCCCCG GTGACTATGGCTTGC TERM 2461 1826430 - 1826410 - T 78 -12.5 -2.60723 | opp_overlap 1826402, overlap 1826409 GTAGTGTTAAGCAAT GGGGACCCG TTT CTGGTCCCC GGTGACTATGGCTTG CJA_1575 1827426 - 1826485 - | polyphosphate kinase family protein TERM 2462 1827175 - 1827159 - G 71 -2.9 -4.86731 | overlap 1827154 1827162 GCCCTTCAAACAAAA TCACCAC TTT GTGGCCA GTGTGGGCAACCCAA TERM 2463 1827286 - 1827306 + g 71 -11.2 -2.96395 | CTCATCGGGCGATTC CCTGGCAT TGTCC ATGCCAGG TATCTGGTCATAAAT TERM 2464 1827538 - 1827578 + H 72 -10.6 -2.82895 | gap 1, overlap 1827538 GCAGCTGCCTTCTGG CTGATGTCAGCCTGTGTTG ACAT CAGTACAGGC-GACATCAA GTTATTACTGCAAGA TERM 2465 1827538 - 1827579 + H 83 -10.4 -3.71848 | overlap 1827538 GCAGCTGCCTTCTGG C-TGATGTCAGCCTGTGTTG ACAT CAGTACAGGC-GACATCAAG TTATTACTGCAAGAG TERM 2466 1828280 - 1828267 - g 75 -4.5 -4.82901 | overlap 1828268 1828269 GCGTTGGCACAAAAA GCCAC GCTG GTGAC TCGCAACACGCGTGA CJA_1576 1827946 - 1828338 + | PIN (PilT N terminus) domain CJA_1577 1828473 - 1829612 + | fic family protein CJA_1578 1829819 - 1831003 + | putative ATP-dependent DNA helicase CJA_1579 1831000 - 1831986 + | phage-related regulatory protein cII CJA_1580 1832390 - 1833232 + | hypothetical protein TERM 2467 1833263 - 1833248 - f 73 -7.6 -4.09685 | overlap 1833233 TTCCACCGGGTAAAA CTTTCC CACC GGAAAG ACCAGAGCTTGGCGA TERM 2468 1833654 - 1833665 + G 77 -7.2 -4.4891 | opp_overlap 1833654, overlap 1833653 CAACGCTGAAGATAA CGGC AACC GCCG TTTTATCATGGTGCA mod 1833421 - 1834257 + | type III restriction-modification system methyltransferase TERM 2469 1835837 - 1835808 - g 78 -9.3 -3.98214 | gap 1, opp_overlap 1835808 1835807 1835810, overlap 1835811 ATCATGCAGGATAAA CAGCGGCT-GCTGG ATT CCAGCGAACCGGTG CGTTTTATCTTTAGT res 1834257 - 1837268 + | type III restriction system endonuclease csm2 1838104 - 1837439 - | CRISPR-associated protein, Csm2 family TERM 2470 1837523 - 1837541 + g 86 -11 -3.91984 | overlap 1837526 CTGAATTGCAGCAGC CAGTGCGC GCT GCGCATTG TTCTTTGCAAACTCT TERM 2471 1837526 - 1837538 + g 81 -9.1 -4.08557 | overlap 1837523 AATTGCAGCAGCCAG TGCGC GCT GCGCA TTGTTCTTTGCAAAC TERM 2472 1837841 - 1837828 - G 70 -3.8 -4.60678 | opp_overlap 1837828, overlap 1837830 CAAAAACACAATAAA CCCT GTCAAA AGGG TCTCCTGCCAGTTTT rloA 1839397 - 1838117 - | RloA protein TERM 2473 1838416 - 1838396 - G 77 -8.3 -4.07975 | opp_overlap 1838396 1838395, overlap 1838384 TAACTGAACCAGAAA CTGCACC AGCTTGG GGTGCAG GTTGTCGTGTAGTTC TERM 2474 1840008 - 1840032 + G 72 -6.4 -4.40358 | gap 1, opp_overlap 1839995 ACCGGCTGTACGCTA CCGATGCGCTG CAAA CCGC-CATCGG TTTTGTGGAGTCGCT CJA_1585 1839659 - 1841197 + | hypothetical protein CJA_1586 1841200 - 1841961 + | hypothetical protein TERM 2475 1843416 - 1843404 - g 78 -10.5 -3.50555 | overlap 1843400 1843398 GTCAAAGAACACGAA CGCGC CTG GCGCG GCGCAATTGAACGGG TERM 2476 1844466 - 1844486 + G 95 -12.6 -4.2123 | opp_overlap 1844463 1844466 CTGACCGAAGAAGCA CTGCCGGA AAAAC TCCGGCAG TTTCTTGAGTACCTG TERM 2477 1844486 - 1844466 - g 82 -13.3 -2.94872 | opp_overlap 1844466, overlap 1844463 CTGACCGAAGAAGCA CTGCCGGAA AAA CTCCGGCAG TTTCTTGAGTACCTG CJA_1587 1841958 - 1845263 + | ATP synthase, Delta/Epsilon chain, long alpha-helix domain TERM 2478 1845333 - 1845378 + G 71 -9.2 -3.53012 | opp_overlap 1845368, overlap 1845332 1845335 1845335 ATTACTGTCACCGTC TGC-CTGGCCGTTGGTATTGTC TATT GGTAG-ACCAACGGCCAGCGTA TTTGCCGAAGCGACC CJA_1588 1845247 - 1846392 + | hypothetical protein CJA_1589 1846479 - 1847549 + | hypothetical protein afuB_2 1849370 - 1847583 - | ABC transporter permease protein TERM 2479 1847881 - 1847863 - G 74 -8 -4.08064 | AAGCTTTGGGTAAAA CCAGCGCC GCA GACGCGGG CGGCGGCTTCGAGGT TERM 2480 1848384 - 1848395 + g 77 -7.2 -4.56597 | overlap 1848368 CGGCCAGCGCCAGGG GCCG AGGT CGGC TTTTTCGAAGGGCGC TERM 2481 1848681 - 1848649 - G 70 -11.2 -2.83012 | gap 1, overlap 1848636 AAGGCCAGCAGCAGA CCCGCCGCCAGGCCC GGCA GGGAC-AGCGGCAGG GTGATGCGCCAGAAG TERM 2482 1849363 - 1849328 - G 100 -11.9 -4.59853 | opp_overlap 1849321 1849330 GGAATCTCTGAAAAA CAGCCTGTGTTGCCA GCGCGG TGGCACAACAGGCTG TGCTCATGTGTTGTG TERM 2483 1849402 - 1849421 + r 72 -4.9 -4.7078 | opp_overlap 1849385, overlap 1849404 TCGGTTTTTCCACCG CGCTGGC TGCCGT GCCAGGG TTTTTCAATGGTTGC CJA_1591 1850414 - 1849437 - | ABC transporter, substrate binding protein TERM 2484 1850501 - 1850526 + r 95 -14.7 -3.55444 | opp_overlap 1850477 TACTTCCCTGTAGCT CCCGCGCGTCA TCCC TGACGCGAGGG TTTCAAAACTAAAAG TERM 2485 1850675 - 1850649 - R 90 -13.1 -3.53224 | gap 1, overlap 1850650 GACTGTGTTTCGAAA CCCTGCAAGCCA TGGA TGGCTTGC-GGG AGCTACAAGGATGTA TERM 2486 1850675 - 1850650 - R 81 -13.3 -2.71791 | overlap 1850649 ACTGTGTTTCGAAAC CCTGCAAGCCA TGGA TGGCTTGCGGG AGCTACAAGGATGTA CJA_1592 1851884 - 1850748 - | ABC transporter ATP-binding protein TERM 2487 1851936 - 1851904 - R 70 -9.8 -3.08046 | gap 1, overlap 1851903 GTTTTAGCCGAAAAT CGGGGCTG-GACGGA GTGT CCCGCATCAGCCCCG CATGATAATGACATT TERM 2488 1851977 - 1852016 + r 79 -12.8 -2.79023 | gap 1, opp_overlap 1851972, overlap 1851975 TTTGATGACACTTAC GGGACACGCTTGCCGGGCG TTG CACCCGGCAAG-GTGGCCA TGCTTAGTAGCGTTC CJA_1593 1853894 - 1852020 - | hypothetical protein CJA_1594 1853929 - 1854081 + | hypothetical protein CJA_1595 1855504 - 1854362 - | hypothetical protein CJA_1596 1856636 - 1855605 - | hypothetical protein CJA_1597 1857131 - 1856652 - | hypothetical protein CJA_1598 1857253 - 1858143 + | Auxin Efflux Carrier superfamily cysC 1858747 - 1858157 - | adenylylsulfate kinase TERM 2489 1858249 - 1858260 + g 71 -2.2 -4.9725 | overlap 1858230 CGGCCTGTTGCGGTG CCAG TTGA TTGG TTTTTATATGCAGCT CJA_1600 1859053 - 1859703 + | Aspartyl/Asparaginyl beta-hydroxylase family TERM 2490 1860095 - 1860107 + G 79 -4.7 -4.91473 | TGATGTGGATCTGTG GCAGC CCT GCGGC TTTATTTTTCACTTG TERM 2491 1860442 - 1860430 - g 72 -5.5 -4.46926 | opp_overlap 1860430 CATCTCACCAGAAAA TGGCA GGG CGCCA TATGTCGGGTGATCC CJA_1601 1859748 - 1860881 + | hypothetical protein TERM 2492 1861084 - 1861102 + F 76 -4.6 -5.00765 | opp_overlap 1861083 GGATTTATAAGCTAT TCACTTGA AAA TGAAGTGA TTTTTGTGCTTCATT purU 1861175 - 1862035 + | formyltetrahydrofolate deformylase CJA_1603 1863231 - 1862047 - | transporter, major facilitator family TERM 2493 1862185 - 1862161 - G 74 -10 -3.44891 | gap 1, overlap 1862162 AACAAAGCCAATCAA CGCCGGACCTG CGAG CAGG-CCGGCA TACCCCATACTGACC TERM 2494 1862184 - 1862162 - G 73 -11.3 -2.6585 | gap 1, overlap 1862161 ACAAAGCCAATCAAC GCCGGACCTG CGAG CAGG-CCGGC ATACCCCATACTGAC TERM 2495 1863761 - 1863782 + G 72 -4.3 -4.59109 | overlap 1863763 TGAAAGCAACCGGGG CACTGGAAG TAAT CTGCCAGGG TTTTTCCCGCATCTC TERM 2496 1864011 - 1863989 - g 74 -10.5 -3.21099 | opp_overlap 1863990 TTGGCGCAGTAGGAA CCCCGGTCC TGGTG GGACTGGGG CAGGGTATTCCCGGA TERM 2497 1864050 - 1864093 + G 82 -9.1 -4.19238 | opp_overlap 1864050 1864052, overlap 1864052 1864079 CGAAACATTGCAACA GATT-GCCGTGATCGCCATCA GTAT TGATG-TGGTCACGGCGAGTC TTTTACCGTTGGCCA TERM 2498 1864052 - 1864090 + G 73 -11.9 -2.81289 | gap 1, opp_overlap 1864052 1864050, overlap 1864050 1864079 AAACATTGCAACAGA TTGCCGTGATCGCCATCA GTAT TGATG-TGGTCACGGCGA GTCTTTTACCGTTGG TERM 2499 1864704 - 1864716 + G 71 -3.4 -4.78149 | GGGTGCTTCGGTCCC GATG GTGCG CATC TTTTTAAATTCTGAG lctP 1863505 - 1865118 + | L-lactate permease gt35A 1867705 - 1865189 - | carbohydrate phosphosrylase, putative, gt35A CJA_1606 1868758 - 1867766 - | D-lactate dehydrogenase TERM 2500 1868301 - 1868322 + g 70 -3.5 -4.63486 | ACCTGGCCGATTTTA CCGGTGCCG ATCA CGCCGACGG TTTTGTTGACCAGGT TERM 2501 1868540 - 1868526 - G 70 -7 -4.08767 | TCTACCTGGTTAAAA CCGGCG CAG CGCAGG GCAATTAATTGGATG TERM 2502 1868617 - 1868627 + g 75 -6.8 -4.36914 | opp_overlap 1868612 1868609 1868617 TCACAAAGCAGCAGA CAGC CTC GCTG TTTTGTGCCAACAGG CJA_1607 1869471 - 1868860 - | putative lipoprotein TERM 2503 1869405 - 1869395 - GR 74 -6.8 -4.25056 | CAGGCCATGAATAAA CTGC ACA GCAG GATAAGGCCCAAGGG CJA_1608 1870414 - 1869440 - | hypothetical protein CJA_1609 1871190 - 1870426 - | ABC transporter, ATP-binding protein CJA_1610 1872320 - 1871193 - | ABC-type transport system, permease component TERM 2504 1871855 - 1871841 - G 93 -6.4 -5.24129 | CTGTTCGATAAAAAA CGCAAT ATC ACTGCG ACGGGTCTTGGCCTG TERM 2505 1872696 - 1872712 + G 72 -5.7 -4.56597 | opp_overlap 1872698, overlap 1872699 GCCGAGCTGGCAGAG CAGGGGG ATA TCCCCGG TTTTTGGCAGCGCGC CJA_1612 1872348 - 1872827 + | hypothetical protein CJA_1611 1873692 - 1872817 - | putative pseudouridylate synthase CJA_1613 1873673 - 1874215 + | hypothetical protein TERM 2506 1875038 - 1875078 + GT 93 -11.7 -3.68366 | overlap 1875034 CATGGCATTGCTGGA GGTCGCCGGGCGACAGCCG CAG CGGTTGGTGGCCAGCGATC TTGGTTTTGCGGTAG recJ 1874187 - 1875980 + | single-stranded-DNA-specific exonuclease RecJ tesA 1876637 - 1875999 - | acyl-CoA thioesterase I TERM 2507 1876186 - 1876206 + g 100 -18.3 -2.7556 | overlap 1876184 TACAGTTGCTGGAAT TGGCGCGCG TAA CGCGCGCCA TAATTGGGTGGGATT TERM 2508 1876444 - 1876456 + g 70 -4.1 -4.71186 | overlap 1876421 TTAATGATCTGCCAG TGTTG CTT CAGCA TTTTCTGTTCCTGGT CJA_1616 1876705 - 1877388 + | ABC transporter, ATP-binding protein TERM 2509 1878380 - 1878430 + G 75 -11.9 -3.04239 | gap 1, opp_overlap 1878370 1878380, overlap 1878370 1878380 AATTATTGCAGCGAA CCGTTGCTGCCAGTTTGCAACAGA CCTA TCAGTTGCGC-CTGGCAGCAGCGA GTTTCTATCCCTATG TERM 2510 1878380 - 1878431 + G 91 -11.7 -4.07868 | opp_overlap 1878370 1878380, overlap 1878370 1878380 AATTATTGCAGCGAA C-CGTTGCTGCCAGTTTGCAACAGA CCTA TCAGTTGCGC-CTGGCAGCAGCGAG TTTCTATCCCTATGG TERM 2511 1878493 - 1878504 + G 70 -3.6 -4.59109 | overlap 1878473 GTGTGCTTTGCACTG CCGG CGCT CTGG TTTTTACCGGGTGTG CJA_1617 1877392 - 1879887 + | efflux ABC transporter, permease protein CJA_1618 1879900 - 1881267 + | MATE domain protein CJA_1619 1881722 - 1882195 + | GtrA-like protein family CJA_1620 1882222 - 1883808 + | FAD binding domain protein TERM 2512 1883818 - 1883840 + F 91 -7.6 -5.18561 | opp_overlap 1883820, overlap 1883820 GCCTAACTATTCCAA TAGCCGCCTT TTA ATGGCGGCTC TTTTTTCGCTGTTTA TERM 2513 1883838 - 1883820 - f 73 -10.2 -3.08015 | opp_overlap 1883818 1883820 CTAACTATTCCAATA GCCGCCTT TTA ATGGCGGC TCTTTTTTCGCTGTT TERM 2514 1883820 - 1883838 + F 90 -10.2 -4.20118 | opp_overlap 1883820, overlap 1883818 CTAACTATTCCAATA GCCGCCTT TTA ATGGCGGC TCTTTTTTCGCTGTT TERM 2515 1885545 - 1885558 + G 82 -3.1 -5.30575 | TGGTTTTGTTCTGTA TAGCG TCCT TGCTA TTTTTTGGATTTTTG CJA_1621 1883927 - 1885576 + | hypothetical protein gt2H 1886561 - 1885578 - | glycosyl transferase, putative, gt2H CJA_1623 1887316 - 1887089 - | hypothetical protein TERM 2516 1887595 - 1887581 - H 79 -2.9 -5.27335 | opp_overlap 1887581 TTGTTGAAATAAAAA TTACA GTTAG TGTAA TGTTTGTTGAAAAAA hmrR 1887649 - 1888074 + | heavy metal regulator HmrR dcd 1888198 - 1888767 + | deoxycytidine triphosphate deaminase CJA_1626 1888773 - 1888958 + | hypothetical protein TERM 2517 1888966 - 1889008 + T 100 -15.9 -3.97022 | gap 1, opp_overlap 1888971 1888979, overlap 1888969 1888979 CAAGGTAGTGTGCTT CACA-ACTAAAAAAGGCTCC AGAT GGAGCCTTTTTTAGTATGCG TTCTATTTCTATTGG TERM 2518 1888969 - 1889004 + T 95 -16.4 -2.70023 | opp_overlap 1888971 1888979, overlap 1888966 1888979 GGTAGTGTGCTTCAC AACTAAAAAAGGCTCC AGAT GGAGCCTTTTTTAGTA TGCGTTCTATTTCTA TERM 2519 1889002 - 1888971 - T 100 -19 -3.28924 | opp_overlap 1888969 1888966 1888979, overlap 1888979 TAGTGTGCTTCACAA CTAAAAAAGGCTCC AGAT GGAGCCTTTTTTAG TATGCGTTCTATTTC TERM 2520 1888994 - 1888979 - T 100 -10.4 -5.32944 | opp_overlap 1888969 1888966 1888979, overlap 1888971 TTCACAACTAAAAAA GGCTCC AGAT GGAGCC TTTTTTAGTATGCGT TERM 2521 1888979 - 1888994 + T 100 -10.4 -5.22312 | opp_overlap 1888979 1888971, overlap 1888969 1888966 TTCACAACTAAAAAA GGCTCC AGAT GGAGCC TTTTTTAGTATGCGT CJA_1627 1889512 - 1889027 - | FKBP-type peptidyl-prolyl cis-trans isomerase CJA_1628 1890300 - 1889569 - | hypothetical protein purN 1891015 - 1890338 - | phosphoribosylglycinamide formyltransferase TERM 2522 1890747 - 1890726 - G 75 -7.1 -4.3898 | AGTATGCGCATAAAA CCGGCAAGG ACTA CCAGGCCGG GGGTATAGGCATCAA purM 1892125 - 1891019 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 2523 1891804 - 1891826 + g 82 -7.6 -4.48221 | opp_overlap 1891793, overlap 1891807 CGCACATGGCCACCA GGTCGACACC GAT GGTGTCGTGC TTTTGTAAATTCATG TERM 2524 1891807 - 1891823 + g 81 -12.3 -3.19859 | overlap 1891804 ACATGGCCACCAGGT CGACACC GAT GGTGTCG TGCTTTTGTAAATTC TERM 2525 1892655 - 1892632 - g 93 -8.8 -5.03715 | opp_overlap 1892632 AGGAGGGGGAAAAAA GCCTCAAGGC GATA GCCTTGCAGC TCAATTATTCTCCCG TERM 2526 1892979 - 1893004 + G 78 -7.5 -4.37971 | overlap 1892981 CGCTATACCCCAACT TCTATCGGGGG AGTT CCCCCGACAAA TTTTGATGCTGTTTT CJA_1631 1892292 - 1893704 + | hypothetical protein TERM 2527 1894273 - 1894258 - g 91 -11.8 -4.08216 | overlap 1894259 GCAGGCGTTGCAAAA GCGCGC GCGC GCGCGC GGCCTGGAGCTGAAT TERM 2528 1894274 - 1894259 - g 75 -11.8 -3.04715 | overlap 1894258 CAGGCGTTGCAAAAG CGCGCG CGCG CGCGCG GCCTGGAGCTGAATG CJA_1632 1893713 - 1894432 + | DnaA family protein TERM 2529 1896027 - 1896005 - g 80 -12 -3.31792 | opp_overlap 1896005 1896004 GCATCACCGCGATAA CCTGACCGAC CTT GCCGATCAGG ATTTGATCGCAAGCA cel9B 1894665 - 1896545 + | endo-1,4-beta glucanase, putative, cel9B CJA_1634 1897555 - 1896596 - | putative ADA regulatory protein cutE 1899205 - 1897661 - | apolipoprotein N-acyltransferase TERM 2530 1899226 - 1899245 + r 100 -10.7 -5.28176 | opp_overlap 1899226 GTTTCCTATAAAAAA TCCCGCC AGGGTG GGCGGGA TTTTTTGTCGATAGC TERM 2531 1899245 - 1899226 - R 100 -10.7 -5.24129 | opp_overlap 1899226 GTTTCCTATAAAAAA TCCCGCC AGGGTG GGCGGGA TTTTTTGTCGATAGC CJA_1636 1900144 - 1899272 - | magnesium and cobalt efflux protein CorC CJA_1637 1900697 - 1900164 - | hypothetical protein TERM 2532 1900193 - 1900212 + g 93 -12.8 -3.87994 | CAGCACTGCTGCTGG CCTGGCGC CTGG GCGCCGGG TTTGTGGGAATGGCT CJA_1638 1901803 - 1900709 - | PhoH-like protein CJA_1639 1902911 - 1901949 - | hypothetical protein TERM 2533 1902475 - 1902451 - G 70 -4.4 -4.4448 | gap 1, overlap 1902452 AAATCCTCAAAGAAA CGATTGA-CCA GGGC TGGCTCAATCA ATAGCACAACCCCGC TERM 2534 1902557 - 1902532 - G 71 -2.6 -4.98616 | overlap 1902542 GTAAAAGAGCAAAAA GCTACCAA TACACCGACT TCGGTAGC GCTTAAGCCTTTTGA TERM 2535 1902973 - 1902947 - R 80 -7.2 -4.66537 | GCGGTTAACAGAAAA GGTTCGGCAATG AGT CAGTGCCAATCC TGATCCAGTTCCGAG miaB 1904331 - 1902961 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 2536 1903789 - 1903775 - G 73 -11.4 -2.78463 | opp_overlap 1903774 1903770 1903769 ACCTCCGCCATCACA TCGGCC ACC GGCCGA CTGACTTCTTCACCG TERM 2537 1903878 - 1903867 - G 70 -7.2 -4.07124 | CATGATGGAGACAAA GGCG CTGA CGCC ATCGGCATCGGGTTG TERM 2538 1904443 - 1904431 - R 72 -4.7 -4.66609 | GATTGGATTGAAAAA GCCGG TTC CGGGC AAGGATTTACCGCTC TERM 2539 1904574 - 1904553 - R 83 -10.1 -4.14472 | opp_overlap 1904553 GTAACACCGTTAAAA GGCATGGGG ATAA CTCCATGCC TTTTATGTCGGTATG TERM 2540 1904553 - 1904574 + r 100 -12.3 -4.56358 | opp_overlap 1904553 GTAACACCGTTAAAA GGCATGGGG ATAA CTCCATGCC TTTTATGTCGGTATG CJA_1641 1906026 - 1904593 - | ATP-dependent RNA helicase, DEAD box family TERM 2541 1904708 - 1904718 + g 79 -4.6 -5.02074 | GCCGGGCGGCCATTG GCCT TGG GGGC TTTTTTGGCCGGTGC TERM 2542 1905078 - 1905107 + g 90 -9.1 -4.55287 | overlap 1905082 TCCCCTCCTTGAATT CCTTGAGCGCGCG GCGG CGTGCGCCCTGGG TTTTCTCTGAGTGGA TERM 2543 1905494 - 1905512 + g 75 -11.8 -3.04322 | opp_overlap 1905493 1905494, overlap 1905498 TCCAGTACCAGGAAC TCAACCTG TTG CAGGTTGA TATTACCCAGTTCCA TERM 2544 1905512 - 1905494 - G 72 -11.8 -2.53715 | opp_overlap 1905494 1905498, overlap 1905493 TCCAGTACCAGGAAC TCAACCTG TTG CAGGTTGA TATTACCCAGTTCCA CJA_1642 1906185 - 1906063 - | hypothetical protein TERM 2545 1906119 - 1906103 - G 73 -3.6 -4.82901 | overlap 1906105 TTGTCTGTATAAAAA TTGCCC AGGCG GGGCGA GAATAGGAAAAACTT TERM 2546 1906397 - 1906386 - g 74 -2.2 -5.06414 | CCGGCCGAAGAAAAA CTCA AAAA CGAG TTTGCCGGTGTCAAG CJA_1643 1906221 - 1906562 + | hypothetical protein TERM 2547 1907154 - 1907180 + G 77 -10.1 -3.60792 | gap 1, overlap 1907162 1907162 GGAGCATTTACCCGC CGTCACTGCGGC CAAG GCCGCGG-GGCG TTTGCGCATTGGCCC CJA_1644 1906684 - 1908207 + | putative glycerol kinase ppkA 1910631 - 1908271 - | serine/threonine protein kinase PpkA TERM 2548 1908377 - 1908403 + g 81 -4.3 -5.1101 | gap 1, overlap 1908379 TTGTGCTTGGCTGAG CCGCCACGCACC ACAC GG-GCCTGGCAG TTTTTTACCTCGTAA TERM 2549 1909715 - 1909690 - G 78 -5.3 -4.86731 | gap 1 TTGGCGTAAATAAAA GCCACGCCCCGG TTG CCAGCGCA-GGC TGCATAAACGGTTCC CJA_1646 1911539 - 1910673 - | protein phosphatase TERM 2550 1911207 - 1911219 + g 78 -9.1 -3.88654 | overlap 1911205 GCGGCTGTCGCCGAC CCAGG CAA CCTGG TATTTGTTGTTGTTG CJA_1647 1911670 - 1911578 - | hypothetical protein TERM 2551 1911699 - 1911676 - R 83 -13.2 -3.27994 | gap 1 GCAAGGTCACATCAA CCCGGT-TGCC GAT GGCAGACCGGG TGATGGAACAGGTAT CJA_1648 1914701 - 1911714 - | Peptidase M16 inactive domain family TERM 2552 1912355 - 1912323 - GR 77 -9.9 -3.57561 | gap 2, opp_overlap 1912331 GCTGAAGGCGGCAAA GCCCGGCGTGACCGG CTCTC CCGGCCA-GC-GGGC AGCCAACTGGTCGCG TERM 2553 1912620 - 1912638 + gr 79 -8 -4.4009 | GTGGCCGGTAACGCT CTGCTCGC GGC GCGCGCGG TTTTGTGCAATCAAC CJA_1649 1915275 - 1914655 - | DTW domain protein CJA_1650 1915598 - 1915272 - | GIY-YIG catalytic domain protein smtA 1915727 - 1916572 + | smtA protein CJA_1652 1917191 - 1916691 - | DnaJ domain protein TERM 2554 1916905 - 1916924 + g 74 -2 -5.12068 | ATTGCCAGTTTACTG GCGGGCTT GGGT GATTCCGC TTTTTGTTGCCTGTG TERM 2555 1917927 - 1917956 + G 72 -7.2 -4.20749 | overlap 1917945 GCTTTATCGAGGTGG GGTTTGATGGGG ATTTTG CTCCGTTAAACC TTTATTGGAGTGTTA TERM 2556 1918788 - 1918806 + G 87 -4.5 -5.24799 | opp_overlap 1918788, overlap 1918790 AATCTGCGCAAACAA TGGGGGT GACTG ACCCCGA TTTTTATATTTATCA CJA_1653 1917335 - 1918990 + | putative lipoprotein CJA_1654 1919000 - 1919608 + | hypothetical protein TERM 2557 1919744 - 1919759 + F 82 -6 -5.26316 | TCGTCCGTCTATTGC CCTGGG CCAC CCCTGG TTTTTTATGAGGTAA CJA_1655 1919778 - 1920869 + | peptidylarginine deiminase-related protein TERM 2558 1921226 - 1921242 + G 72 -10.1 -3.2964 | overlap 1921227 ATCGCAAGATGCATA TCCCGGA TGA TCCGGGG TTCTACGAGAAGTTT TERM 2559 1921227 - 1921241 + G 73 -11.4 -2.57463 | overlap 1921226 TCGCAAGATGCATAT CCCGGA TGA TCCGGG GTTCTACGAGAAGTT TERM 2560 1921590 - 1921602 + G 70 -4.7 -4.55295 | overlap 1921590 1921589 TAGTTTTGTGGCAGG CCCCC AGG GGGAG TTTCTTTATCGCGCC CJA_1656 1920856 - 1921752 + | glycosyl hydrolase, family 10 CJA_1657 1921884 - 1922603 + | hypothetical protein TERM 2561 1922623 - 1922638 + F 79 -2.6 -5.35365 | CACGTACCAACGGCT TGTTAT ATTA ATGACA TTTTTATTCTATTTT TERM 2562 1922757 - 1922779 + G 72 -6.4 -4.36914 | opp_overlap 1922757 1922756 TCAGTCAATTTAAAG GTAAAAAACA GGT TGTTTTATAC TTTTATCCGAAGGCC bcp 1922669 - 1923142 + | Bcp CJA_1659 1923361 - 1923804 + | transcriptional regulator, AraC family TERM 2563 1923836 - 1923881 + F 76 -8.6 -4.128 | gap 2, opp_overlap 1923835 1923836 1923838 TACCTTTAGACAAAG GAGCGCTAATTGCCTAGCTGTT GTAA AACAGGTAG--AGTTAGCGCTC TTTATATGTAGAGGT CJA_1660 1923904 - 1924245 + | preprotein translocase, YajC subunit TERM 2564 1924266 - 1924285 + T 100 -13.6 -6.02919 | opp_overlap 1924266 ATCCATACTGGAAAA TAGGGGGC TTAG GCCCCCTA TTTTTTTATTTGTGG TERM 2565 1924285 - 1924266 - T 100 -13.6 -4.1721 | opp_overlap 1924266 ATCCATACTGGAAAA TAGGGGGC TTAG GCCCCCTA TTTTTTTATTTGTGG CJA_1661 1924682 - 1924317 - | DsrC dsrH 1924959 - 1924651 - | DsrH CJA_1663 1925326 - 1924961 - | DsrE/DsrF-like family dsrE 1925731 - 1925336 - | dsrE protein TERM 2566 1925754 - 1925775 + r 86 -13.1 -3.38218 | opp_overlap 1925754, overlap 1925757 1925772 CCTGATAGAAATAAA TAAGGCTCC CGGA GGAGCCTTA TTATAAGCTGTTTAA TERM 2567 1925775 - 1925754 - R 100 -13.1 -4.62441 | opp_overlap 1925754 1925757 1925772 CCTGATAGAAATAAA TAAGGCTCC CGGA GGAGCCTTA TTATAAGCTGTTTAA TERM 2568 1925757 - 1925772 + r 83 -10.4 -3.81848 | opp_overlap 1925754, overlap 1925754 GATAGAAATAAATAA GGCTCC CGGA GGAGCC TTATTATAAGCTGTT CJA_1665 1926482 - 1925799 - | integral membrane protein TERM 2569 1926348 - 1926331 - G 81 -8.3 -4.30416 | ATGATTAAGCCAAAA CCGCGGC CTAT GCCGAGG GCCATAGAAAGGCCT TERM 2570 1926685 - 1926664 - R 100 -15.9 -5.60689 | opp_overlap 1926664 GTAGATAAGAAAAAA GGCGCTGGT GTTA ACCAGCGCC TTTTGACATATGGCG TERM 2571 1926664 - 1926685 + r 100 -15.9 -4.16943 | opp_overlap 1926664 GTAGATAAGAAAAAA GGCGCTGGT GTTA ACCAGCGCC TTTTGACATATGGCG TERM 2572 1926892 - 1926919 + r 82 -11.4 -3.55801 | opp_overlap 1926897, overlap 1926897 TTTTCACGCGTATAA AAAAACCGCACT GTTT AGTGCGGTTTTC TTTAACGACATTGAT TERM 2573 1926897 - 1926914 + r 100 -11.3 -4.86731 | opp_overlap 1926897, overlap 1926892 ACGCGTATAAAAAAA CCGCACT GTTT AGTGCGG TTTTCTTTAACGACA TERM 2574 1926914 - 1926897 - R 100 -11.3 -5.61596 | opp_overlap 1926892 1926897 ACGCGTATAAAAAAA CCGCACT GTTT AGTGCGG TTTTCTTTAACGACA CJA_1667 1929797 - 1926954 - | ribonuclease, Rne/Rng family protein TERM 2575 1929694 - 1929705 + g 70 -5.8 -4.2349 | TTCGATTTTTTTTGT TCGC GACT GCGA TTTTCGATATCCAAA TERM 2576 1930091 - 1930109 + H 79 -11.8 -3.1855 | overlap 1930084 1930095 GCTTTCGCTTGCTTT GCAATCCT TAC AGGATTGC TTGCATCTTGCCACA TERM 2577 1930458 - 1930488 + H 79 -8.2 -4.34771 | TGGCGCGTTTGCTAT GGCAGATGACCGGT TAA ATTGGACAGCTGCC TTTTCGTCAGTTTTC CJA_1668 1930523 - 1930648 + | hypothetical protein TERM 2578 1931296 - 1931281 - g 74 -6.1 -4.57073 | CATGGTGGCTAAAAA GCGCA GCTACT TGCGC CACTTGCAGGCTGCC CJA_1669 1930730 - 1931779 + | pseudouridine synthase, RluA family subfamily CJA_1670 1931800 - 1932447 + | HAD-superfamily hydrolase CJA_1671 1933036 - 1932455 - | septum formation protein Maf CJA_1672 1933132 - 1933767 + | predicted metal-binding/nucleic acid-binding protein rpmF 1933811 - 1933993 + | ribosomal protein L32 TERM 2579 1934053 - 1934074 + G 80 -11.5 -3.40163 | overlap 1934054 GCAGTAGATGCTATG AGCGGGGAC TTAG GTCCCCGCG TTGCTATTGATGCTG TERM 2580 1934054 - 1934073 + G 90 -15 -2.63616 | overlap 1934053 CAGTAGATGCTATGA GCGGGGAC TTAG GTCCCCGC GTTGCTATTGATGCT TERM 2581 1934279 - 1934265 - g 84 -4.2 -5.18726 | opp_overlap 1934265 GCGCCATAAGAAAAA TTCCTC TAT GTGGAA GTCTTTGGAGCTTCT plsX 1934017 - 1935018 + | fatty acid/phospholipid synthesis protein PlsX fabD 1935040 - 1935978 + | malonyl CoA-acyl carrier protein transacylase fabG 1936003 - 1936746 + | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 2582 1937020 - 1937007 - g 82 -2.4 -5.39221 | AGAAGAAGTAAAAAA CGAA GCTTCT TTCG TCGAAGATCTGGGCG acpP 1936933 - 1937169 + | acyl carrier protein TERM 2583 1937203 - 1937228 + F 100 -11.3 -5.62288 | opp_overlap 1937203 1937200 TGTACTTCCAAAGGA GCCGTATTATT GAAA AATAGTACGGC TTTTTCTTTTGTTAG CJA_1678 1937368 - 1938606 + | Beta-ketoacyl synthase, N-terminal domain protein TERM 2584 1938627 - 1938659 + F 100 -17.2 -3.70478 | gap 1, opp_overlap 1938634, overlap 1938634 GTAATTGCTGCTTTC CAGAAAACGCCGGGC TAAA GCCCGGCGTTTT-TG TTTGGATAACTTTAT TERM 2585 1938634 - 1938653 + F 100 -16.4 -5.30616 | opp_overlap 1938634, overlap 1938627 CTGCTTTCCAGAAAA CGCCGGGC TAAA GCCCGGCG TTTTTGTTTGGATAA TERM 2586 1938653 - 1938634 - f 100 -16.4 -4.36914 | opp_overlap 1938634 1938627 CTGCTTTCCAGAAAA CGCCGGGC TAAA GCCCGGCG TTTTTGTTTGGATAA pabC 1938690 - 1939568 + | 4-amino-4-deoxychorismate lyase TERM 2587 1940234 - 1940221 - g 78 -8.1 -4.41206 | opp_overlap 1940220 AACTACCCTATAAAA CGCCT TATG AGGCG CTAATTATGGCATCG CJA_1680 1939581 - 1940669 + | Uncharacterized BCR, YceG family glnS 1940795 - 1942531 + | glutaminyl-tRNA synthetase TERM 2588 1942872 - 1942886 + G 70 -4.2 -4.71828 | opp_overlap 1942872 TCGCCCGGATATAGA GCCG CGTGCTA CGGC TTTTATTGATCAGAT cysS 1942537 - 1943937 + | cysteinyl-tRNA synthetase CJA_1683 1943951 - 1944145 + | hypothetical protein CJA_1684 1945275 - 1944463 - | cytochrome C assembly protein TERM 2589 1944547 - 1944533 - G 74 -3.4 -4.9138 | opp_overlap 1944536 ATCAGGCAAATAAAA CCGGCC AGT GCCCAG CGTATGGCTTTGTTT ffh 1945481 - 1946854 + | signal recognition particle protein TERM 2590 1946900 - 1946873 - T 100 -18.6 -3.28791 | opp_overlap 1946873 1946879, overlap 1946879 ACGCTCTGTTTATAA CAAAAAGCCCGC GTTT GCGGGCTTTTTG TTTTCTGGCGAACTG TERM 2591 1946873 - 1946900 + T 100 -18.6 -4.3739 | opp_overlap 1946873 1946879, overlap 1946879 ACGCTCTGTTTATAA CAAAAAGCCCGC GTTT GCGGGCTTTTTG TTTTCTGGCGAACTG TERM 2592 1946879 - 1946894 + T 100 -11.8 -5.54907 | opp_overlap 1946879 1946873, overlap 1946873 TGTTTATAACAAAAA GCCCGC GTTT GCGGGC TTTTTGTTTTCTGGC TERM 2593 1946894 - 1946879 - T 100 -11.8 -5.18726 | opp_overlap 1946873 1946879, overlap 1946873 TGTTTATAACAAAAA GCCCGC GTTT GCGGGC TTTTTGTTTTCTGGC CJA_1686 1947341 - 1946919 - | conserved hypothetical protein TIGR00149 CJA_1687 1948039 - 1947677 - | type III effector HopPmaJ(Pto) TERM 2594 1948228 - 1948240 + G 74 -10.5 -3.14132 | AATTTATATTCCCTT CGCCG GGC CGGCG TTGCTGGAAGCGCCA sfcA1 1948196 - 1949884 + | NAD-dependent malic enzyme TERM 2595 1950012 - 1950053 + G 78 -12.5 -2.9176 | gap 1 TCAGCTAGATGGCTA TCTTCGTGCTATTGCGCTTG CAC CAGGGGCAATAGCA-GAGGA TATGTGGATACCATT TERM 2596 1950441 - 1950451 + G 71 -3.2 -4.80396 | TTTCAACCCAGGGGA TCTC GTT GAGG TTTTTGAGTCTTTTC CJA_1689 1949896 - 1950534 + | yecA family protein subfamily CJA_1690 1950718 - 1951080 + | hypothetical protein TERM 2597 1951086 - 1951115 + F 100 -16.5 -3.93288 | gap 1 CAAGCCTTGATCCTT CCGTGCCCCGATGT TAT GCATCGGGGC-CGG TTTGCTTGGATAGCC TERM 2598 1951397 - 1951413 + G 100 -4.3 -5.67967 | overlap 1951399 TCCTCACGGCTTTTC CCCTGTC ATT GGCAGAG TTTTTTTCTCCTGGT CJA_1691 1951186 - 1951791 + | aldehyde dehydrogenase TERM 2599 1951884 - 1951862 - f 100 -16.3 -3.61398 | CTTTCTGTGGAACAA GGCCGGGCA GAGTA TGCCCGGCC TGCTACACTCAAAAG TERM 2600 1952681 - 1952700 + F 72 -6.4 -4.36914 | overlap 1952671 ATTGAGTCCATGATG GCCTTTGA AACA TCCAAGGC TTTTGTGGGGGCCCA TERM 2601 1953228 - 1953215 - f 77 -3.8 -5.09426 | CCCAAGGTTAAAAAA TCGG TGTTGG CCGA GGTAGAGACCAAGGT TERM 2602 1953579 - 1953603 + F 79 -9.9 -3.7829 | opp_overlap 1953576, overlap 1953581 1953595 AGTTAATGGAAACCT GGGGCTGGCCT ATG GGGCCAGCCTA TTTGCTGGATGTAGT TERM 2603 1953581 - 1953601 + F 93 -14.7 -3.47361 | opp_overlap 1953576, overlap 1953579 1953595 TTAATGGAAACCTGG GGCTGGCCT ATG GGGCCAGCC TATTTGCTGGATGTA fadA 1954148 - 1955326 + | acetyl-CoA C-acyltransferase FadA TERM 2604 1955374 - 1955347 - f 78 -12.8 -2.75844 | opp_overlap 1955352, overlap 1955352 TGGTGGATGTCAAAT CAAAAGCCGACC TCGG GGTCGGCTTTTT TAATTCTGTTACACT TERM 2605 1955369 - 1955352 - f 100 -12.7 -4.55798 | opp_overlap 1955352, overlap 1955347 GATGTCAAATCAAAA GCCGACC TCGG GGTCGGC TTTTTTAATTCTGTT TERM 2606 1955352 - 1955369 + F 100 -12.7 -5.3671 | opp_overlap 1955352 1955347 GATGTCAAATCAAAA GCCGACC TCGG GGTCGGC TTTTTTAATTCTGTT CJA_1694 1955447 - 1956901 + | hypothetical protein CJA_1695 1956973 - 1957236 + | hypothetical protein CJA_1696 1957756 - 1957349 - | hypothetical protein lexA 1958351 - 1957749 - | LexA repressor CJA_1698 1958819 - 1958457 - | putative lipoprotein TERM 2607 1958752 - 1958767 + Gg 74 -10.4 -3.47227 | CAGCGCAGGGTGTCC GCCTGG CAGC CCAGGC TTATGCTAATTAAGG CJA_1699 1958427 - 1958780 + | hypothetical protein CJA_1700 1959760 - 1958930 - | oxidoreductase, short chain dehydrogenase/reductase family CJA_1701 1959896 - 1960303 + | flagellar protein FliS CJA_1702 1960313 - 1960597 + | hypothetical protein TERM 2608 1960578 - 1960599 + F 76 -8.7 -4.07885 | opp_overlap 1960573 GCCAGCAAGAGGTTA GCCTTATGG CGAA CCATTAGGC TTTTGGCAGGCGCTG CJA_1703 1960720 - 1961109 + | flagellar protein FliS TERM 2609 1961162 - 1961175 + F 85 -6.7 -5.18297 | TTTGCCGCTTGTTTT GCCAA CTTT TTGGC TTTTATTTGTTCTTG TERM 2610 1962644 - 1962666 + G 74 -9.9 -3.54676 | opp_overlap 1962643, overlap 1962640 CAGTATGCAGGATAC TCTCCTGCT GCCGG AGCAGGGGA TTGATTTGCGTGAAT fleQ 1961367 - 1962821 + | regulatory protein TERM 2611 1964087 - 1964110 + G 83 -12.4 -3.35996 | opp_overlap 1964088, overlap 1964088 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 2612 1964088 - 1964109 + G 95 -15.9 -2.61383 | opp_overlap 1964088, overlap 1964087 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 2613 1964109 - 1964088 - g 100 -15.9 -5.71983 | opp_overlap 1964088 1964087 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_1705 1962965 - 1964116 + | ISCja2, transposase TERM 2614 1964137 - 1964151 + T 89 -5.6 -5.64873 | opp_overlap 1964136, overlap 1964138 ACTATGGGACAGCAG TGTGGC ATG GCCACC TTTTTTGTTGTTGGC TERM 2615 1964138 - 1964150 + T 77 -9.1 -3.97297 | opp_overlap 1964136, overlap 1964137 CTATGGGACAGCAGT GTGGC ATG GCCAC CTTTTTTGTTGTTGG CJA_1706 1965610 - 1964186 - | Superfamily II DNA and RNA helicase TERM 2616 1965056 - 1965088 + g 93 -2.6 -5.74122 | overlap 1965059 CGCAGAGAACAGCAG GTTCTGGCGTTGCT TGGGC AGCAGGGCAAGTAC TTTTTTTATGTCGTG TERM 2617 1965249 - 1965223 - G 70 -5.8 -4.25104 | opp_overlap 1965226 1965231, overlap 1965225 1965226 GGGTTGCTACCAAAA TATCGACACCGC CGC GCAGTGTCATCA TCTGTGGATTGATAC TERM 2618 1965728 - 1965702 - R 71 -9.5 -3.19824 | overlap 1965700 1965698 GCATTAAGGAAGAGA GGCGACACT GACCTTCGG AGTGTCGCC GCGCATGGTACGCAC CJA_1707 1967080 - 1965785 - | bicyclomycin resistance protein TERM 2619 1966530 - 1966504 - G 75 -4.4 -4.84359 | CCAGGCGCAGAAAAA TCCATACCCCGA TAA TCAGTGCATAGA CAATGTACAGCACGA fleS 1967438 - 1968718 + | two-component sensor TERM 2620 1968881 - 1968867 - g 78 -12.8 -2.87564 | TCATTGCGGTAGACA GCGCCG AAG CGGCGC TCAGGCAACTGGCAA fleR 1968734 - 1970257 + | transcriptional activator CJA_1710 1970476 - 1970288 - | hypothetical protein CJA_1711 1970741 - 1970484 - | hypothetical protein fliE 1970740 - 1971114 + | flagellar hook-basal body complex protein (FliE) TERM 2621 1971544 - 1971554 + G 81 -8.2 -4.30014 | overlap 1971521 1971538 GGCTTGCCCTCAAGC CCGG TTG CCGG TTTTGAATTAATGGA fliF 1971193 - 1972902 + | flagellar M-ring protein FliF TERM 2622 1973564 - 1973545 - g 72 -8.6 -3.76482 | GGAGATCATGAATAA CCTCGATG GCTC CATCGAAG CCGAATTGATGGATA fliG 1972931 - 1973926 + | flagellar motor switch protein FliG fliH 1973945 - 1974766 + | Flagellar assembly protein FliH fliI 1974729 - 1976159 + | flagellum-specific ATP synthase FliI CJA_1717 1976168 - 1976623 + | putative flagellar protein FliJ CJA_1718 1976839 - 1977144 + | hypothetical protein TERM 2623 1978014 - 1978025 + G 74 -2.2 -5.14563 | AGTTAAAAAACATCC TGCC GGTC GGTA TTTTTTGCTGCGCCA TERM 2624 1978339 - 1978324 - g 70 -6.8 -4.07687 | opp_overlap 1978324 1978328 1978330 AGTCTTTGTCCAAAA CCGCGA GCCG TCACGG CTGTTTGATGAAATT CJA_1719 1977206 - 1978984 + | response regulator CJA_1720 1979000 - 1979359 + | Hpt domain protein TERM 2625 1979457 - 1979478 + F 81 -12.3 -3.15663 | opp_overlap 1979450 CGATATCAGCCTTTT GGGCGGCAA GCAT TTGCCGCTC TTAATGGCACTACCT TERM 2626 1980437 - 1980397 - g 82 -7.7 -4.58395 | gap 3 TGGATGCGTTAAAAA CCCCA--GC-TCCACCGGCA CCTG TTCCGGTGGATGCACTGGGG CGTCCCCTGGATGCA TERM 2627 1980466 - 1980481 + G 72 -6.1 -4.37092 | CAAATTCCCCTTTAT CTCCG ACAGCG CGGAG TTTTGTGGCGCAAAT CJA_1721 1979532 - 1980914 + | putative flagellar hook-length control protein FliK CJA_1722 1981105 - 1981674 + | Flagellar basal body-associated protein FliL fliM 1981686 - 1982705 + | flagellar motor switch protein FliM fliN 1982695 - 1983096 + | flagellar protein TERM 2628 1983103 - 1983130 + F 100 -14.9 -4.56775 | opp_overlap 1983101 CTGCGCTAATCTAGG CGGGCGACAGG ATAAAA CCTGTTGCCCG TTTTTCGGCGCCCGT CJA_1725 1983144 - 1983779 + | flagellar protein FliO fliP 1983790 - 1984629 + | Flagellar biosynthetic protein fliP TERM 2629 1984810 - 1984776 - g 72 -10.2 -3.28119 | gap 2 AGCGACCCAGATTAA CGAGCAAACGCTGAGC TTTTT GC-CA-CGTTTGCTCG TCACCATCGCAACCC TERM 2630 1984841 - 1984857 + G 86 -10.9 -3.97602 | overlap 1984835 TGATGGTGGCCGGCC CCTGGTT GTT AACCAGG TTTATGGATCTGTTC fliQ 1984642 - 1984911 + | flagellar biosynthetic protein FliQ TERM 2631 1984987 - 1984998 + G 93 -3.6 -5.46706 | overlap 1984978 TATCTGGCCAATGCT GCGT ATCG GCGC TTTTTATTTTGCAGT TERM 2632 1985188 - 1985207 + G 93 -8.6 -5.0916 | GGCGCTGGGGTTTAC CATGCAGG TTGT CTTGCATG TTTTTGTATTGGCAG TERM 2633 1985295 - 1985308 + G 71 -2.3 -4.96388 | overlap 1985278 1985277 GTGGCGTCAGTGTCA CTGTG TTAT CCCAG TTTTATTTGCTGCTT fliR 1984919 - 1985704 + | flagellar biosynthetic protein FliR TERM 2634 1986662 - 1986673 + G 70 -5.8 -4.15044 | opp_overlap 1986651, overlap 1986651 TAGAGTCGCCGCCTT TGGC CCGC GCCA TTTATTACACCACGG flhB 1985704 - 1986843 + | flagellar biosynthetic protein FlhB CJA_1730 1986948 - 1987667 + | hypothetical protein CJA_1731 1988493 - 1987906 - | putative lipoprotein CJA_1732 1988752 - 1989015 + | hypothetical protein CJA_1733 1989063 - 1991246 + | Response regulator receiver domain protein TERM 2635 1991278 - 1991252 - T 84 -13.8 -2.93723 | overlap 1991247 TGTTGATTAATGACA CCCATACTGTCC TAT AGACAGCATGGG GCTTGAGGGAATTTA xth 1992100 - 1991291 - | exodeoxyribonuclease III TERM 2636 1992123 - 1992146 + r 100 -14.6 -3.6682 | opp_overlap 1992123 GCCCGTTAACAAAAA CACCCGGGCA TCGC TGCTCGGGTG TTTGAGTGAGTGAAA TERM 2637 1992146 - 1992123 - R 100 -12.4 -5.06414 | opp_overlap 1992123 GCCCGTTAACAAAAA CACCCGGGCA TCGC TGCTCGGGTG TTTGAGTGAGTGAAA prc 1994320 - 1992170 - | tail-specific protease TERM 2638 1992289 - 1992299 + g 79 -2.4 -5.2291 | GTTTCAATTCTTTGT CCTG ATC CTGG TTTTTCTTCTCATCT TERM 2639 1993250 - 1993261 + g 70 -5.8 -4.24002 | GGCTTTTTTGGCAGC CTGG TCTT CCAG TTTTACGGTTTCGCG CJA_1736 1995512 - 1994568 - | hypothetical protein TERM 2640 1995177 - 1995156 - G 70 -7.3 -4.06419 | gap 1 TTCGCGTATAAAGAA GAGCCTG-TG ATT CATCAGGCCC CGGTAGGCATCGATG CJA_1737 1996053 - 1995625 - | hypothetical protein CJA_1738 1995877 - 1995975 + | hypothetical protein CJA_1739 1996339 - 1996196 - | hypothetical protein TERM 2641 1996299 - 1996269 - G 70 -10.7 -2.82558 | gap 1, opp_overlap 1996277, overlap 1996277 ACATAATTAACATCA TA-AAAAAAGCGGC AAAT GCCGCTTTTTTGTA ATAAACCCTGTTTCA TERM 2642 1996290 - 1996277 - G 100 -9.5 -5.70829 | opp_overlap 1996277, overlap 1996269 AACATCATAAAAAAA GCGGC AAAT GCCGC TTTTTTGTAATAAAC TERM 2643 1996277 - 1996290 + g 100 -9.5 -5.31275 | opp_overlap 1996269 1996277 AACATCATAAAAAAA GCGGC AAAT GCCGC TTTTTTGTAATAAAC TERM 2644 1996317 - 1996305 - G 82 -9.1 -4.15044 | CTTTTTTGTAATAAA CCCTG TTT CAGGG TTGGCGCTTGCACTT CJA_1740 1997438 - 1996371 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2645 1996528 - 1996550 + g 72 -7.1 -4.2528 | GCACCTATATTGCTT TCTATCATC AGGCC GATGATGGA TTTATTGCCTTCCAG TERM 2646 1999599 - 1999613 + G 70 -4.2 -4.61231 | overlap 1999598 CCGGTATACGATTCT GCCC AGCTTGG GGGC TTTTTAAACCTATCA CJA_1741 1997706 - 1999913 + | phospholipase, patatin family TERM 2647 1999931 - 1999969 + T 100 -20.5 -3.9279 | opp_overlap 1999931 CTGCCCGGTAAGTTA CAGGCTTGCCAGCTC CCATGACAT GAGCTGGCAAGCCTG TTTATGCGGTTGAAT TERM 2648 1999969 - 1999931 - T 100 -20.5 -2.52464 | opp_overlap 1999931 CTGCCCGGTAAGTTA CAGGCTTGCCAGCTC CCATGACAT GAGCTGGCAAGCCTG TTTATGCGGTTGAAT CJA_1742 2000753 - 2000001 - | putative lipoprotein TERM 2649 2000789 - 2000803 + r 78 -6.4 -4.70879 | overlap 2000790 2000801 TGTGTGATTTACGTG TGGCTA GTC TAGCCG TTTTTGCGGTTTGAA CJA_1743 2001717 - 2000797 - | transcriptional regulator, LysR family TERM 2650 2002551 - 2002566 + G 73 -11.8 -2.79183 | opp_overlap 2002539 ACATGGCCATTGAGG CCGGCG CGCG CGCCGG TATGGTGGCGGTGGA TERM 2651 2003212 - 2003251 + G 76 -7.6 -4.20918 | overlap 2003245 CCGCACACATCTGGT GAGCCCGGCCATGGCGGC AGCA GCGGCGATTGCCGGCCAC TTTGTTGACGTTCGC leuC 2001857 - 2003278 + | 3-isopropylmalate dehydratase, large subunit TERM 2652 2003892 - 2003917 + G 70 -6.7 -4.05877 | gap 1, opp_overlap 2003879 2003892, overlap 2003894 TTCGCGCCTACGAAA CC-CGGCGCCGC GCT GAGGCGCCCTGG TTGTTTGATGTGGTG leuD 2003291 - 2003938 + | 3-isopropylmalate dehydratase, small subunit leuB 2003962 - 2005038 + | 3-isopropylmalate dehydrogenase asd 2005071 - 2006174 + | aspartate-semialdehyde dehydrogenase TERM 2653 2006205 - 2006237 + F 100 -20.7 -4.8543 | opp_overlap 2006210, overlap 2006210 ACGGGTTGTCACTGA CAAAACCCCGCGAGC TAT GCTCCCGGGGTTTTG TTTTTATAGCGATTG TERM 2654 2006210 - 2006232 + F 100 -14.8 -5.35224 | opp_overlap 2006210, overlap 2006205 TTGTCACTGACAAAA CCCCGCGAGC TAT GCTCCCGGGG TTTTGTTTTTATAGC TERM 2655 2006232 - 2006210 - f 100 -14.8 -4.42386 | opp_overlap 2006210 2006205 TTGTCACTGACAAAA CCCCGCGAGC TAT GCTCCCGGGG TTTTGTTTTTATAGC TERM 2656 2006342 - 2006328 - f 76 -4.2 -5.03145 | GAATGCGCCAAAAAA GGCC GGTATTT GGCC CGATGTCAAGTCCTC TERM 2657 2007314 - 2007351 + G 75 -11.3 -3.07935 | gap 1, opp_overlap 2007326, overlap 2007316 2007326 AGGCTGTGCGTCAAT TTGCG-GCCCAAACCGGC GAT GCCAGTTTGGGCGCTCAG TTGAATGCCTCACGT TERM 2658 2007316 - 2007347 + G 95 -15.2 -2.55213 | gap 1, opp_overlap 2007326, overlap 2007314 2007326 GCTGTGCGTCAATTT GCGGCCCAAACCGGC GAT GCCAGTTTGGG-CGC TCAGTTGAATGCCTC CJA_1748 2006536 - 2009595 + | hypothetical protein TERM 2659 2009615 - 2009640 + F 100 -15.5 -5.69262 | CAGGTTGATCATCGA GCCTTGCACGG CATG CTGTGCAAGGC TTTTTGTTTTTATAG TERM 2660 2010542 - 2010591 + G 100 -8.7 -5.52384 | gap 1, overlap 2010545 2010575 TGTTTTTTCCTGAGC CTTTGGGCGGTTTTGCCGATGC GGATTGA GTATCGGCAAAACCGA-CAGCG TTTTTTTAATAAGGA TERM 2661 2010545 - 2010589 + G 75 -11.5 -2.93701 | overlap 2010542 2010575 TTTTTCCTGAGCCTT TGGGCGGTTTTGCCGATGC GGATTGA GTATCGGCAAAACCGACAG CGTTTTTTTAATAAG truA 2009671 - 2010570 + | tRNA pseudouridine synthase A trpF 2010655 - 2011302 + | N-(5'phosphoribosyl)anthranilate isomerase TERM 2662 2011677 - 2011711 + G 70 -10.1 -3.21747 | gap 2, opp_overlap 2011692, overlap 2011699 CGTGATTGCCGAGAC CGGT-GCCG-GGCAACA CGG TGTTGCCACAGCGACCG TTGCTGCTCGCCTGG trpB 2011306 - 2012532 + | tryptophan synthase, beta subunit TERM 2663 2012550 - 2012579 + F 100 -14.3 -4.6644 | opp_overlap 2012549 2012548, overlap 2012552 TTTCACTGCATAACC TCTCACTGCCGGG CCTA CCCGGCAGTGGCA TTTTTAGGATCTGTT TERM 2664 2012552 - 2012577 + F 95 -16.9 -2.62545 | opp_overlap 2012549 2012548, overlap 2012550 TCACTGCATAACCTC TCACTGCCGGG CCTA CCCGGCAGTGG CATTTTTAGGATCTG trpA 2012599 - 2013408 + | tryptophan synthase, alpha subunit accD 2013517 - 2014377 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 2665 2014563 - 2014588 + G 80 -11.8 -3.39353 | overlap 2014554 2014564 TCTTGTGTGACTGCA ACGGCAGCGC TGTTGC GCGCTGCCGG TTACTCTGTTGGTGT TERM 2666 2014564 - 2014587 + G 95 -15.3 -2.62889 | overlap 2014554 2014563 CTTGTGTGACTGCAA CGGCAGCGC TGTTGC GCGCTGCCG GTTACTCTGTTGGTG TERM 2667 2015566 - 2015553 - g 72 -8.1 -3.92592 | overlap 2015554 AGTGGCAAGATGAAA GCCTG TTTG CAGGC GCTGCTACAGGTGTC folC 2014386 - 2015678 + | folylpolyglutamate synthetase CJA_1755 2015696 - 2016286 + | Sporulation related repeat family cvpA 2016417 - 2016938 + | CvpA family protein TERM 2668 2018030 - 2018019 - g 74 -2.2 -5.06451 | opp_overlap 2018028 CAGCAGCGCAAAAAA TCGG TACG CCAA AAGCTCAATCCTATT TERM 2669 2018049 - 2018033 - g 81 -9.5 -4.13945 | opp_overlap 2018028 ATCGGTACGCCAAAA GCTCAAT CCT ATTGAGC TGGAGTTTAAAGGCA purF 2016990 - 2018513 + | amidophosphoribosyltransferase metZ 2018557 - 2019783 + | O-succinylhomoserine sulfhydrylase TERM 2670 2019892 - 2019913 + F 76 -8.7 -4.13014 | GGTAAAGTGCGCGCC CTGTCACCT GCTA GGGTGACGG TTTTAGGACTATAGC TERM 2671 2019998 - 2020028 + F 93 -9.8 -4.72486 | opp_overlap 2020006, overlap 2019999 2020006 TTAGTCCTACCAATT TTAAAAAAGCGCCT TTT GGGCGCTTTTTTCG TTTTTAACCTTTGTA TERM 2672 2019999 - 2020027 + F 79 -11.1 -3.42407 | opp_overlap 2020006, overlap 2019998 2020006 TAGTCCTACCAATTT TAAAAAAGCGCCT TTT GGGCGCTTTTTTC GTTTTTAACCTTTGT TERM 2673 2020006 - 2020020 + F 100 -9.2 -5.54079 | opp_overlap 2020006, overlap 2019999 2019998 ACCAATTTTAAAAAA GCGCCT TTT GGGCGC TTTTTTCGTTTTTAA TERM 2674 2020020 - 2020006 - f 100 -8.5 -5.10029 | opp_overlap 2019999 2019998 2020006 ACCAATTTTAAAAAA GCGCC TTTTG GGCGC TTTTTTCGTTTTTAA TERM 2675 2020147 - 2020160 + F 81 -3.7 -5.27779 | CGCCCATGTTTTAAG CGCTG AATC CTGCG TTTTTTAGTATTCCC TERM 2676 2020890 - 2020861 - g 71 -2.9 -4.80167 | gap 1 CATGAAAAAGCAAAA TCCTG-TTGGCG AGGATGG CGACAAGCAGGA GCCGGAAGACGAGGT TERM 2677 2021753 - 2021741 - g 71 -3.3 -4.81551 | CAGGCACAGGAAAAA GTGGC TGA GCAAC TTAAGCCCTTACTGG CJA_1760 2020211 - 2022115 + | putative Hsp90 protein TERM 2678 2022158 - 2022185 + F 100 -16.4 -5.38047 | opp_overlap 2022158 CACTGGCTAAAAAAA TGACCTTGGCCG ATAC TGGCCAAGGTCA TTTTTTATGTAGGTC TERM 2679 2022185 - 2022158 - f 100 -15.7 -5.41143 | opp_overlap 2022158 CACTGGCTAAAAAAA TGACCTTGGCC GATACT GGCCAAGGTCA TTTTTTATGTAGGTC mgsA 2022232 - 2022696 + | methylglyoxal synthase CJA_1762 2022999 - 2023214 + | cold-shock domain family protein TERM 2680 2023245 - 2023262 + T 100 -12.7 -5.72616 | opp_overlap 2023245 ACTTACTTAAAAAAA CACCGGC ATCT GCCGGTG TTTTTTTATCTGCCT TERM 2681 2023262 - 2023245 - T 100 -12.7 -5.47821 | opp_overlap 2023245 ACTTACTTAAAAAAA CACCGGC ATCT GCCGGTG TTTTTTTATCTGCCT CJA_1763 2024122 - 2023277 - | putative lipoprotein TERM 2682 2023693 - 2023712 + g 70 -4.2 -4.59109 | AGGACTGGCCACCAC TGATCAGG ATAC CCTGGGCA TTTTTCGCCGATGTA mfd 2027736 - 2024182 - | transcription-repair coupling protein Mfd TERM 2683 2025629 - 2025647 + g 76 -11 -3.28712 | overlap 2025630 TTGAGCGATTCATAG TGCTGCTG TGC CAGCAGCG TTGTGGGGGCGAGAA TERM 2684 2025630 - 2025646 + g 76 -12.3 -2.57132 | overlap 2025629 TGAGCGATTCATAGT GCTGCTG TGC CAGCAGC GTTGTGGGGGCGAGA TERM 2685 2028780 - 2028822 + G 77 -10.4 -3.58269 | opp_overlap 2028770 2028775 AGATACCAATCCTCT GGCGGCTGACCCAGCGGTGA TTA TCGCCGCTAAGGCAGATGCC TTTGCCAATGGCTTG nqrA 2028304 - 2029647 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit TERM 2686 2030238 - 2030256 + G 95 -5.9 -5.38549 | overlap 2030237 GAATTTCCTCAATCC GGCACTG ACCGG CCGTGCC TTTTTGTTCTTTGCA nqrB 2029651 - 2030853 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit TERM 2687 2031245 - 2031229 - g 70 -3.7 -4.59773 | overlap 2031243 TTTCATGGTGAAAAA TGGTGAT GAA ATCAGCA AGATTATCCTGCCCG TERM 2688 2031374 - 2031360 - g 74 -2.7 -4.92756 | ACGACCAAAAAGAAA CCCCC GGTCT GGGTG GTGAGGTTGATAATC nqrC 2030846 - 2031622 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit nqrD 2031625 - 2032293 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit nqrE 2032293 - 2032901 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit nqrF 2032923 - 2034146 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit TERM 2689 2034185 - 2034155 - f 80 -13.4 -2.50816 | opp_overlap 2034160, overlap 2034160 TGGCTAGTGAGTAAG GAAAACGAGGCAGA GAA CCTGCCTCGTTTTT TTATTTCAAGGGCGT TERM 2690 2034160 - 2034180 + F 100 -12.6 -5.95539 | opp_overlap 2034160 2034155 AGTGAGTAAGGAAAA CGAGGCAG AGAAC CTGCCTCG TTTTTTTATTTCAAG TERM 2691 2034180 - 2034160 - f 100 -13.3 -4.45945 | opp_overlap 2034160, overlap 2034155 AGTGAGTAAGGAAAA CGAGGCAGA GAA CCTGCCTCG TTTTTTTATTTCAAG CJA_1771 2034237 - 2034497 + | hypothetical protein CJA_1772 2034609 - 2036006 + | soluble pyridine nucleotide transhydrogenase TERM 2692 2036084 - 2036047 - T 86 -12.9 -3.38281 | opp_overlap 2036051 2036058, overlap 2036049 2036051 2036058 TTATTGAAAATGCAA CAGATAAAAAACGCCGC AGAA GCGGCGTTTTTTATTTC AGTCATGTCTTCAGC TERM 2693 2036082 - 2036049 - T 100 -15.5 -3.25515 | opp_overlap 2036051 2036058, overlap 2036047 2036051 2036058 ATTGAAAATGCAACA GATAAAAAACGCCGC AGAA GCGGCGTTTTTTATT TCAGTCATGTCTTCA TERM 2694 2036080 - 2036051 - T 100 -18.1 -3.18404 | opp_overlap 2036051 2036058, overlap 2036049 2036047 2036058 TGAAAATGCAACAGA TAAAAAACGCCGC AGAA GCGGCGTTTTTTA TTTCAGTCATGTCTT TERM 2695 2036051 - 2036080 + T 100 -18.1 -3.71265 | opp_overlap 2036051 2036049 2036047 2036058, overlap 2036058 TGAAAATGCAACAGA TAAAAAACGCCGC AGAA GCGGCGTTTTTTA TTTCAGTCATGTCTT TERM 2696 2036073 - 2036058 - T 100 -11.8 -5.47431 | opp_overlap 2036058 2036051, overlap 2036051 2036049 2036047 GCAACAGATAAAAAA CGCCGC AGAA GCGGCG TTTTTTATTTCAGTC TERM 2697 2036058 - 2036073 + T 100 -11.8 -5.65927 | opp_overlap 2036051 2036049 2036047 2036058, overlap 2036051 GCAACAGATAAAAAA CGCCGC AGAA GCGGCG TTTTTTATTTCAGTC CJA_1773 2036408 - 2036100 - | hypothetical protein CJA_1774 2037000 - 2036428 - | hypothetical protein TERM 2698 2038062 - 2038078 + G 76 -3.6 -4.91109 | overlap 2038063 CCTGGGATTAAGTGC CCGCCA GGTGA TGGCGA TTTTTGTAGTACAAG CJA_1775 2037067 - 2038371 + | efflux ABC transporter, permease protein CJA_1776 2038381 - 2039082 + | insulin-like growth factor I TERM 2699 2040230 - 2040242 + G 80 -5.5 -5.0133 | GGTTGTTGTTACGGC GCTGG TGA TCAGC TTTTTTGCAACCCTG CJA_1777 2039079 - 2040317 + | lipoprotein releasing system, permease protein CJA_1778 2040395 - 2042830 + | DNA internalization-related competence protein ComEC/Rec2 CJA_1779 2042916 - 2043611 + | MotA/TolQ/ExbB proton channel family domain protein TERM 2700 2043656 - 2043645 - g 77 -5.8 -4.59773 | TTCCAGCGCCAAAAA GTCG ATAA CGAC GGGATTAACCTGACA CJA_1780 2043624 - 2044049 + | ExbD/TolR family protein TERM 2701 2044055 - 2044079 + F 82 -12.9 -2.91582 | overlap 2044057 GGCACCCTGATGCCA CATGGTCGGGT TTA ACCTGGCCATG TGTATCGGTAGAATG CJA_1781 2044056 - 2045180 + | tetraacyldisaccharide 4'-kinase kdsB 2045223 - 2045990 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase CJA_1783 2045987 - 2046460 + | protein-tyrosine-phosphatase murB 2046472 - 2047494 + | UDP-N-acetylpyruvoylglucosamine reductase TERM 2702 2047498 - 2047510 + F 78 -6.3 -4.61231 | ATTTACCCTTGAGAT GTGAA TAT TTCAC TTTTTGGGAGTCTGA gacA 2047740 - 2048393 + | GacA TERM 2703 2048376 - 2048406 + F 100 -11.8 -4.43012 | overlap 2048382 CACAATTTGCTTGAT CCGGAGGCCGTCGT ATA ACGGCGGCTTTGGG TTTTACTATTAGCGT TERM 2704 2048382 - 2048400 + F 95 -12.4 -3.95448 | overlap 2048376 TTGCTTGATCCGGAG GCCGTCGT ATA ACGGCGGC TTTGGGTTTTACTAT TERM 2705 2050201 - 2050182 - g 71 -2.1 -4.99861 | CAGGAAGTACAAAAA GCCAG TGTTGTGGAG CTGGC CAAGGTACCGGGAAT uvrC 2048427 - 2050265 + | excinuclease ABC, C subunit TERM 2706 2050603 - 2050621 + G 70 -5.3 -4.32177 | gap 1, overlap 2050607 GCTACTGGTCAGTAT CCATCACC ATCT GGTG-TGG TTTGTTGTGGCCTCA pgsA 2050355 - 2050906 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CJA_1790 2052058 - 2051279 - | RNA methyltransferase, TrmH family pdxJ 2052837 - 2052064 - | Pyridoxal phosphate biosynthesis protein PdxJ TERM 2707 2052773 - 2052788 + g 72 -4.7 -4.68103 | TTGCCAGGGCGTGAA TTGCG AATAAG CGCAA TTTTATTCAGGTTGA CJA_1792 2053481 - 2052834 - | peptidyl-prolyl cis-trans isomerase A (PPIaseA) (Rotamase A) (Cyclophilin A) TERM 2708 2052982 - 2053000 + g 74 -2.2 -5.10497 | opp_overlap 2052982 2052983, overlap 2052983 2052984 TGTGCTTTAAACATA CCGCGCGG TTC CTGCGCAA TTTTTTCAATAACTT CJA_1793 2054171 - 2053509 - | hypothetical protein CJA_1794 2054566 - 2054198 - | YCII-related domain family TERM 2709 2054346 - 2054334 - GR 71 -10.5 -2.71791 | opp_overlap 2054333 2054332 2054330, overlap 2054333 AGGCTGCCGGTAAAT CCGGC TTC GCCGG GATCTTCTGTATCAA CJA_1795 2055326 - 2054532 - | hypothetical protein TERM 2710 2055836 - 2055848 + G 82 -9.1 -4.28548 | CTGGAGACGCTGTGG TGGGG CGC CCCCA TTTTGCTCAATACCT CJA_1796 2055370 - 2056284 + | PHP domain protein CJA_1797 2056303 - 2056920 + | Sua5/YciO/YrdC/YwlC family protein TERM 2711 2057343 - 2057360 + G 79 -9.9 -3.76952 | ATGGCTTACGTTGAT CTGATGG AGTC CCATCAG TTTGAGTTGGCTGCC scpA 2057142 - 2057912 + | segregation and condensation protein A CJA_1799 2058002 - 2058877 + | segregation and condensation protein B TERM 2712 2058865 - 2058887 + F 73 -7.8 -4.11183 | overlap 2058868 TGCCAATGAGGACGC TGACAAAACC TAA GGTTTTGTGA TTATTTATGATCAAG TERM 2713 2058868 - 2058884 + F 70 -9.5 -3.08206 | overlap 2058865 CAATGAGGACGCTGA CAAAACC TAA GGTTTTG TGATTATTTATGATC TERM 2714 2059483 - 2059494 + G 70 -3.6 -4.60487 | TGGATTTCAATACCA GCGG GTTA CTGC TTTTTACCAATGATG CJA_1800 2058894 - 2060024 + | RNA pseudouridylate synthase family protein TERM 2715 2060031 - 2060066 + T 100 -17.8 -3.99494 | opp_overlap 2060035 2060041, overlap 2060032 2060041 AGGAAGTAATCCAGA GCAATAAAAAGGCCGC AATT GCGGCCTTTTTATTGA TTATTGTTAAATTAA TERM 2716 2060032 - 2060065 + T 100 -21.3 -2.98973 | opp_overlap 2060035 2060041, overlap 2060031 2060041 GGAAGTAATCCAGAG CAATAAAAAGGCCGC AATT GCGGCCTTTTTATTG ATTATTGTTAAATTA TERM 2717 2060062 - 2060035 - T 100 -17.2 -3.30006 | opp_overlap 2060032 2060031 2060041, overlap 2060041 AGTAATCCAGAGCAA TAAAAAGGCCGC AATT GCGGCCTTTTTA TTGATTATTGTTAAA TERM 2718 2060056 - 2060041 - T 100 -11.8 -5.16841 | opp_overlap 2060032 2060031 2060041, overlap 2060035 CCAGAGCAATAAAAA GGCCGC AATT GCGGCC TTTTTATTGATTATT TERM 2719 2060041 - 2060056 + T 100 -11.8 -5.23396 | opp_overlap 2060041 2060035, overlap 2060032 2060031 CCAGAGCAATAAAAA GGCCGC AATT GCGGCC TTTTTATTGATTATT abfX 2060971 - 2060078 - | abfX GGDEF domain protein abfS 2062673 - 2061270 - | abfS arabinofuranosidase two component system sensor protein TERM 2720 2062045 - 2062083 + g 77 -8.3 -4.11371 | gap 2, opp_overlap 2062057, overlap 2062046 2062057 2062082 AATTGTTCGCCGATA CG-CACAC-TCAAATCGCC TTT GGCGATTTGGCGTGTGGCC TTTTGCAGGGTATTG TERM 2721 2062046 - 2062082 + g 75 -11.8 -3.06341 | gap 2, opp_overlap 2062057, overlap 2062045 2062057 ATTGTTCGCCGATAC G-CACAC-TCAAATCGCC TTT GGCGATTTGGCGTGTGGC CTTTTGCAGGGTATT TERM 2722 2062069 - 2062057 - G 76 -9.1 -3.72141 | opp_overlap 2062046 2062045 2062057 ATACGCACACTCAAA TCGCC TTT GGCGA TTTGGCGTGTGGCCT TERM 2723 2062057 - 2062069 + g 73 -9.1 -3.63805 | opp_overlap 2062057, overlap 2062046 2062045 ATACGCACACTCAAA TCGCC TTT GGCGA TTTGGCGTGTGGCCT TERM 2724 2062143 - 2062132 - G 74 -2.2 -5.14563 | gap 1 TGTGCCAGTAAAAAA CAGGC GGT GCC-G CTCACCAGGATTGAG abfR 2063375 - 2062677 - | abfR arabinofuranosidase two component system response regulator TERM 2725 2063690 - 2063721 + G 81 -9.4 -4.08216 | overlap 2063691 GTATTGGGCAGTCTT TTGGCGGGTGTGCT GATC AGCGCATCCCCCAG TTTTGCCGGCCCTGG TERM 2726 2063691 - 2063720 + G 72 -10.7 -3.04715 | overlap 2063690 TATTGGGCAGTCTTT TGGCGGGTGTGCT GATC AGCGCATCCCCCA GTTTTGCCGGCCCTG CJA_1804 2063618 - 2064157 + | putative periplasmic protein CpxP TERM 2727 2064176 - 2064193 + F 91 -8.4 -5.03715 | opp_overlap 2064176 GGTATTTTTGCATAA GGCCAG CATTGT CTGGCC TTTTTTACGCCTGGT CJA_1806 2064301 - 2064843 + | flavodoxin CJA_1805 2065808 - 2064840 - | putative methyltransferase TERM 2728 2065147 - 2065167 + g 88 -11.1 -4.0825 | GTCTCCAGTACCAGT TGCCCTCCG GGA CGCAGGGCA TTCTTTAATTCCAGC CJA_1807 2066648 - 2065833 - | putative methyltransferase TERM 2729 2066528 - 2066511 - G 72 -6.9 -4.21607 | overlap 2066505 TTCATCGAACACAAA CTGGCTC ACTT GTGCCAG CGGATTGGCGTAGAG CJA_1808 2066734 - 2068524 + | EAL domain/GGDEF domain protein TERM 2730 2069957 - 2069945 - g 79 -4.8 -4.97405 | AGCGAGAAAAACAAA CAGC TGGTG GCTG ACATCAATAAAAAAG TERM 2731 2070008 - 2069998 - g 74 -3.2 -4.90906 | overlap 2070002 CTACAACAGTAAAAA CTAC GCG GCAG CGGCAGATGCCTTCC CJA_1809 2068616 - 2070250 + | putative response regulator/TPR domain protein CJA_1810 2070262 - 2070966 + | sensor histidine kinase TERM 2732 2071354 - 2071341 - g 70 -3.7 -4.59773 | CCTGACCTTGAAAAA CCTCC TGCC GGCGG TACCGGTTAAGGTGA CJA_1811 2071174 - 2072064 + | FHA domain protein TERM 2733 2072112 - 2072134 + F 73 -7.7 -4.13872 | gap 1, overlap 2072113 TCTGCATCCCGACCT G-CGTCCGGA GTAA TCCGGGCGTC TTTGTATCGTTAAAT TERM 2734 2072113 - 2072132 + F 86 -11.4 -3.66117 | overlap 2072112 CTGCATCCCGACCTG CGTCCGGA GTAA TCCGGGCG TCTTTGTATCGTTAA TERM 2735 2073048 - 2073074 + G 86 -10.8 -3.9941 | GGTGATTTGGATGCC GCCTGGAACCAG GCA CTGGCTCTGGGC TTTGATTCTACCCAA CJA_1812 2072160 - 2073440 + | hypothetical protein TERM 2736 2073478 - 2073499 + F 100 -13.1 -5.64274 | opp_overlap 2073481 TGTAAAATGTTTGCA CAATCCACC TATT GGTGGATTG TTTTTTTATGCGTAA TERM 2737 2073496 - 2073481 - f 70 -9 -3.30903 | opp_overlap 2073478 AAAATGTTTGCACAA TCCACC TATT GGTGGA TTGTTTTTTTATGCG CJA_1813 2073566 - 2073823 + | hypothetical protein CJA_1814 2074801 - 2073857 - | putative signal transduction protein containing EAL and modified HD-GYP domains CJA_1815 2075010 - 2075501 + | hypothetical protein TERM 2738 2075952 - 2075978 + G 70 -4.5 -4.55287 | gap 1 TGGACAATATAGTCA GCGATTT-ATCC CAAG GGCTGAAATCGC TTTTCTGTGAATGGA CJA_1816 2075660 - 2076577 + | hypothetical protein CJA_1817 2077406 - 2076585 - | hypothetical protein TERM 2739 2077396 - 2077382 - G 71 -2.8 -4.84359 | TCAGTGCCAGAAAAA TGGATT GTG AAGCCA CATTAGCCATCCAAC CJA_1818 2078167 - 2077484 - | hypothetical protein CJA_1819 2079354 - 2078197 - | hypothetical protein TERM 2740 2078517 - 2078495 - G 90 -9.2 -4.53602 | overlap 2078497 TCCATAGCAAATAAA TCCGAAACAG GCG CTGCTTCGAA CTGCTTTCGCAGCTG TERM 2741 2078857 - 2078867 + g 70 -5.4 -4.323 | opp_overlap 2078857 ATACATCAAATTAAT CAGA AAT TCTG TTTTGGGTCTTTCCA CJA_1820 2080702 - 2079434 - | hypothetical protein TERM 2742 2080234 - 2080216 - G 95 -5.8 -5.31855 | opp_overlap 2080221, overlap 2080217 GATCAAGAATAAAAA TGCCGCGC ATA GCGCGTCT GCGATTTTGCATGGT TERM 2743 2080233 - 2080217 - G 76 -9.3 -3.77486 | opp_overlap 2080221, overlap 2080216 ATCAAGAATAAAAAT GCCGCGC ATA GCGCGTC TGCGATTTTGCATGG CJA_1821 2081473 - 2080730 - | gp68 TERM 2744 2081228 - 2081208 - G 100 -10.5 -4.71828 | ATGCGATCAATAAAA TCATAAGGC ACT GCCTCATGA AATAAATCGCTCATG tnpT 2082524 - 2081544 - | TnpT protein CJA_1823 2082852 - 2083250 + | hypothetical protein CJA_1824 2083364 - 2083876 + | hypothetical protein TERM 2745 2084641 - 2084630 - g 70 -5.8 -4.20806 | GACCTGAAAACCAAA GGCT TAGC AGCC ACATGGAGTGAGCGT TERM 2746 2084926 - 2084906 - g 70 -9.7 -3.17763 | GTGATAGTGGACGAA TTCCGCATC GCG GTTGCGGAA ACCTACGACGTCATA CJA_1825 2083889 - 2085958 + | copper resistance protein A TERM 2747 2086597 - 2086612 + G 72 -6.1 -4.36914 | ACTGGACGAGAAGCT TCGGC AATACC GCCGA TTTTGTAAGAGACCA copB 2085969 - 2086682 + | hypothetical protein TERM 2748 2086863 - 2086852 - g 100 -4.4 -5.54894 | overlap 2086856 AAGCCATGAAAAAAA TGGA TCAT TCCA AGATGGATATGAACG TERM 2749 2086919 - 2086908 - g 81 -4.4 -5.14563 | overlap 2086893 2086909 2086912 GCGCTGATGAAAAAA TGCA GCGC TGCA CACAGCGAGCATGGC CJA_1827 2086719 - 2087024 + | hypothetical protein TERM 2750 2087068 - 2087025 - f 81 -12.4 -3.14344 | opp_overlap 2087031 2087033, overlap 2087029 2087030 2087033 CATGGCGGCCATTAA CAAATTGATGGGAGTGCGAC GGTC GTCGCCCTCCCATCTCTATG AGGAGAAGACTGTAT TERM 2751 2087064 - 2087029 - f 95 -11.8 -4.24342 | opp_overlap 2087031 2087033, overlap 2087025 2087030 2087033 GCGGCCATTAACAAA TTGATGGGAGTGCGAC GGTC GTCGCCCTCCCATCTC TATGAGGAGAAGACT TERM 2752 2087063 - 2087030 - f 100 -15.3 -3.14284 | opp_overlap 2087031 2087033, overlap 2087029 2087025 2087033 CGGCCATTAACAAAT TGATGGGAGTGCGAC GGTC GTCGCCCTCCCATCT CTATGAGGAGAAGAC TERM 2753 2087031 - 2087062 + F 100 -18.8 -2.87132 | opp_overlap 2087030 2087029 2087025 2087033, overlap 2087033 GGCCATTAACAAATT GATGGGAGTGCGAC GGTC GTCGCCCTCCCATC TCTATGAGGAGAAGA TERM 2754 2087033 - 2087060 + F 93 -15.6 -2.98823 | opp_overlap 2087030 2087029 2087025 2087033, overlap 2087031 CCATTAACAAATTGA TGGGAGTGCGAC GGTC GTCGCCCTCCCA TCTCTATGAGGAGAA TERM 2755 2087060 - 2087033 - f 93 -15.6 -2.77283 | opp_overlap 2087033 2087031, overlap 2087030 2087029 2087025 CCATTAACAAATTGA TGGGAGTGCGAC GGTC GTCGCCCTCCCA TCTCTATGAGGAGAA CJA_1828 2087082 - 2087636 + | cytochrome c family protein TERM 2756 2088349 - 2088371 + G 70 -9.8 -3.25918 | overlap 2088348 2088343 GCGTTTGTTTACAGC CTGGTGGCCA CGT TGGCTCCCAG TGTATTTCCGGATTC TERM 2757 2088553 - 2088533 - g 81 -6.8 -4.59773 | overlap 2088536 GTTTAGCTCCAAAAA CAGCGCGA CGCAT TCGCGATG ATGGGAGTGAAGAGG TERM 2758 2088894 - 2088918 + G 79 -4.1 -5.08824 | TTATTTTGTCGTTGC GGTGGTCGCGG TTG CCGTGCTGACC TTTTTTGCCTGGGGG TERM 2759 2089843 - 2089862 + G 70 -5.6 -4.30719 | GTTAAAGGTGATTTA CGCGGGAT TGCG GTCGCGCG TTTCTTATCGGAAGC copF 2087734 - 2090094 + | Haloacid dehalogenase/epoxide hydrolase family:E1-E2 ATPase CJA_1830 2090616 - 2091869 + | heavy metal RND efflux membrane fusion protein, CzcB family TERM 2760 2092178 - 2092189 + G 72 -7.2 -4.17023 | CCGATCTTTACTGGG CGCG CTCC CGCG TTTTGGAGTCCTTGA TERM 2761 2092337 - 2092355 + G 70 -6.7 -4.13767 | overlap 2092338 CCCAATTGCGAGCAT TGCAGGA TTGGT TCCTGCG TTTTGAACTGGCGCC TERM 2762 2093037 - 2093080 + G 71 -11.1 -2.89447 | gap 1, overlap 2093063 CAATATCATGTCCCT TGGCGGCATT-GCCATTGCC ATAGG GGCGATGGTGGATGCAGCCA TCGTTATGATTGAAA CJA_1831 2091862 - 2095008 + | heavy metal RND efflux transporter, CzcA family TERM 2763 2095049 - 2095063 + TF 72 -2.7 -4.9218 | overlap 2095048 CTCTCAACGGTTAAG CGCAC TCTAC GCGCG TTTTTCTCCTGCCTC CJA_1832 2095165 - 2095055 - | hypothetical protein TERM 2764 2096005 - 2096025 + GH 72 -4.8 -4.69664 | gap 1, opp_overlap 2095991 ACAACCCATTTATTC TGGA-TTGG CTGA CCAAATCCA TTTTTGCCTACTCTG CJA_1833 2095164 - 2096204 + | putative cytoplasmic protein CJA_1834 2096344 - 2097024 + | putative lipoprotein CJA_1835 2097880 - 2097677 - | periplasmic metal-binding protein-related protein TERM 2765 2098011 - 2097978 - H 85 -3.9 -5.47218 | gap 1, opp_overlap 2097980, overlap 2097979 2097980 TGTCATTTAAAAAAA GTGCTTGACCTTACCA TGA TGGGAAGGTCGAA-AC TGATGTTACTGTGAC TERM 2766 2098139 - 2098124 - g 78 -5.4 -4.84359 | overlap 2098127 GGACGCGTAGAAAAA GCACTG CGCG CAGTAC CCGGCGTAGAAGACG TERM 2767 2100023 - 2099989 - g 76 -10.8 -3.30441 | gap 1, opp_overlap 2099994, overlap 2099993 GATCACGGGCGATAA CCAAGGCAGC-GCCA GCTCTG TGGCAGCTACCCTGG GCATTCAGGACTTTG cueA 2098043 - 2100472 + | copper transporter cueR 2100483 - 2100875 + | Cu(I)-responsive transcriptional regulator cadR 2101403 - 2101011 - | Cd(II)/Pb(II)-responsive transcriptional regulator CJA_1839 2101484 - 2102149 + | cation efflux family protein CJA_1840 2102233 - 2102607 + | hypothetical protein TERM 2768 2103017 - 2103007 - g 78 -8.2 -4.1673 | overlap 2103008 GAACTGGGTAACAAA CGCG ATG CGCG GGCGGGCGTCGTCAC czcC 2102692 - 2103963 + | cation efflux system protein TERM 2769 2104002 - 2103981 - g 71 -2.1 -5.02074 | overlap 2103982 CTATCCTGTAAAAAA CGGCTGGCA TGGA TCCCGGCCA CGGCCTGCCTTCTGG CJA_1842 2103960 - 2104973 + | possible RND divalent metal cation efflux membrane fusion protein CzcB precursor TERM 2770 2105697 - 2105678 - g 86 -4.2 -5.44119 | overlap 2105681 TGCACTGGAAAAAAA CAACACCA ACAT TGGTGCGG GCTACATCGAAAAAA TERM 2771 2105694 - 2105681 - g 85 -6.7 -4.80853 | overlap 2105678 ACTGGAAAAAAACAA CACCA ACAT TGGTG CGGGCTACATCGAAA TERM 2772 2107957 - 2107976 + G 70 -4.2 -4.59773 | overlap 2107946 CGATCCTGATGGTCG CCCTGGTG GCGG CATTGGGG TTTTTGCCGATGGCA CJA_1843 2105019 - 2108135 + | heavy metal efflux pump, CzcA family subfamily TERM 2773 2108179 - 2108128 - f 93 -8.9 -4.84582 | gap 1, opp_overlap 2108141 2108142 2108177, overlap 2108137 AAAAAATACACAAAA GCCAATAAACAAACTGTCACCGGC TCCGT GCTGGTGACAATTTAATT-CTGGC GCACTGAATATCCAC TERM 2774 2108171 - 2108137 - f 87 -10.1 -4.3351 | opp_overlap 2108141 2108142, overlap 2108128 ACAAAAGCCAATAAA CAAACTGTCACCGGC TCCGT GCTGGTGACAATTTA ATTCTGGCGCACTGA TERM 2775 2108141 - 2108167 + F 74 -8.7 -3.9941 | opp_overlap 2108137 2108128, overlap 2108142 AAGCCAATAAACAAA CTGTCACCGGC TCCGT GCTGGTGACAA TTTAATTCTGGCGCA TERM 2776 2108142 - 2108166 + F 80 -12.2 -2.99325 | opp_overlap 2108137 2108128, overlap 2108141 AGCCAATAAACAAAC TGTCACCGGC TCCGT GCTGGTGACA ATTTAATTCTGGCGC CJA_1844 2108223 - 2108537 + | Nitrogen regulatory protein P-II TERM 2777 2108576 - 2108546 - f 72 -4.7 -4.62069 | gap 1, opp_overlap 2108549, overlap 2108547 2108548 CGCCTAGGTTAAAAA TGTGCGACTGGG GCCGCTTT CCCAGTCGC-CT TGAGGTTCACTACGC pbrT 2108666 - 2110663 + | PbrT protein TERM 2778 2110769 - 2110743 - Tf 100 -11.6 -4.71482 | opp_overlap 2110743 ATCAAAGTTGAAAAA GCCCGACCATTC TTG AAATCGTCGGGC TTTTTGCTTTTTCAG TERM 2779 2110743 - 2110769 + TF 100 -10.9 -5.18355 | opp_overlap 2110743 ATCAAAGTTGAAAAA GCCCGACCATT CTTGA AATCGTCGGGC TTTTTGCTTTTTCAG CJA_1846 2111089 - 2110781 - | helix-turn-helix domain protein TERM 2780 2110948 - 2110976 + gF 74 -3 -5.0133 | overlap 2110938 2110930 2110951 CGAGCGAGGCTTCGC GGAGCGTCAAGC CACTC GCTTCCCGCTGC TTTTTTAGCCAGGTG TERM 2781 2111250 - 2111227 - gH 93 -5.9 -5.17576 | CACCAATCCAAAAAA GCGGCACGC CAGTTC GTGTACCGC AATATGCTGCGGCTG CJA_1847 2111059 - 2111634 + | hypothetical protein CJA_1848 2111631 - 2113064 + | FOG: GGDEF domain TERM 2782 2113667 - 2113649 - g 72 -8.8 -3.73858 | opp_overlap 2113662 2113663, overlap 2113652 CCATACCAAAACGAA GTACGTGG GAG CCACGTTC AAGGTGCCTGCCTTG tnpS 2113116 - 2114030 + | TnpS TERM 2783 2114246 - 2114262 + F 77 -3.7 -5.1925 | opp_overlap 2114246 TCGAATAGCGGAAAA TGCAC CAAATGC GTGCA TTTTTTGGATTGTAC TERM 2784 2114902 - 2114888 - g 70 -5.6 -4.36914 | overlap 2114889 GGGTTGTTCAGAAAA CCTGGA CCA TCCCGG CTGGTGGCGGCGCGC mpr 2114318 - 2115262 + | Mpr protein TERM 2785 2115822 - 2115811 - g 95 -5.8 -5.42259 | opp_overlap 2115799 2115811 TGACGGTGAAAAAAA CCGT TGAT ACGG TGTATGACGAACACC TERM 2786 2116857 - 2116833 - g 79 -2.1 -5.252 | overlap 2116835 TATCGCTACAAAAAA CTGGATAAATA TCT TATCTCTCCGG AACGATGGGCAGCAG CJA_1851 2115336 - 2117894 + | Transposase cheV-2 2118608 - 2118715 + | chemotaxis protein CheV TERM 2787 2119976 - 2119999 + G 83 -12.4 -3.35996 | opp_overlap 2119977, overlap 2119977 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 2788 2119998 - 2119977 - g 100 -15.9 -5.71983 | opp_overlap 2119976 2119977 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 2789 2119977 - 2119998 + G 95 -15.9 -2.61383 | opp_overlap 2119977, overlap 2119976 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_1854 2118854 - 2120005 + | ISCja2, transposase kdpE 2120755 - 2120069 - | DNA-binding response regulator TERM 2790 2120732 - 2120712 - G 90 -6.9 -5.03314 | CCTATGTGTAAAAAA CGACGAA TTTGAGG TTCGTCG TCGATAATAAGAATG kdpD 2122353 - 2120818 - | two-component sensor KdpD TERM 2791 2121270 - 2121283 + g 70 -3.7 -4.72986 | opp_overlap 2121271, overlap 2121271 CGTTATTGATTAGCA ACGGC TTTA GCCGC TTTTTGGTGACGCTC TERM 2792 2122079 - 2122069 - G 95 -6.8 -5.31519 | AGACGTAAATAAAAA CAGC GAG GCTG TCAGCAAATCTTCGT trkH-2 2123801 - 2122350 - | potassium uptake protein TrkH TERM 2793 2123365 - 2123346 - G 77 -6.5 -4.59773 | CCCGACCCGTAAAAA TGGCAAT ACCACG ATTGCCA TACCAATAATCCCTA CJA_1858 2127013 - 2123909 - | phosphorylase kinase alpha subunit TERM 2794 2125534 - 2125551 + g 73 -4 -4.77165 | CTCGACGACGAGGGC GCCCGG TCAATC CCAGGC TTTTATTCTCACCAA TERM 2795 2126944 - 2126934 - G 78 -8.2 -4.20516 | opp_overlap 2126933 CTGGCAGGTAACAAA CCGG ATA CCGG GTGTTGGCGGTTAAG TERM 2796 2127472 - 2127455 - R 82 -11.3 -3.48517 | opp_overlap 2127454 2127455, overlap 2127453 ATGCCACAAAATACA GCACCTG GAAC CAGGTGC ATTTGGATAAGTAAG TERM 2797 2127455 - 2127472 + r 74 -11.3 -2.79878 | opp_overlap 2127455 2127453, overlap 2127454 ATGCCACAAAATACA GCACCTG GAAC CAGGTGC ATTTGGATAAGTAAG CJA_1859 2128788 - 2127619 - | hypothetical protein CJA_1860 2129930 - 2128785 - | N-acetyltransferase and Transcription factor-like protein CJA_1861 2130175 - 2131197 + | probable transmembrane sensor TERM 2798 2131260 - 2131209 - T 72 -10.4 -2.79831 | opp_overlap 2131222, overlap 2131222 TTAAGTCTCACCATA TGTTGCAGCCAAATAGTGTTTCCA CTTA CAAAAACACTATTTAGCTGCAATG AATAAAGTAAGGCGG CJA_1862 2133665 - 2131311 - | penicillin amidase family protein TERM 2799 2132133 - 2132113 - G 75 -5.4 -4.62872 | opp_overlap 2132113 ACTAATGGCGAAAAA CCCGTTAG TGGAT CTAATGGG TTGCTTAACCAGGCG TERM 2800 2133526 - 2133548 + g 71 -2.7 -4.77986 | overlap 2133529 ATGCCATAGGTTGTC CAGCGAATA TCGGC TATCTGCTG TTTTTCGGTGTTTAC vbsA 2133809 - 2134858 + | N6-hydroxylysine acetyl transferase CJA_1864 2136212 - 2134875 - | hypothetical protein TERM 2801 2135124 - 2135141 + g 74 -2.7 -4.97158 | opp_overlap 2135110, overlap 2135126 CCTGTCCAACTGGGC CAGCA AATGGCGG TGCTG TTTTCTTTCATATCC CJA_1865 2137991 - 2136381 - | hypothetical protein CJA_1866 2138242 - 2139627 + | renal dipeptidase family protein pvdE 2139637 - 2141319 + | pyoverdine ABC transporter, permease/ATP-binding protein TERM 2802 2141769 - 2141738 - g 77 -11.6 -3.13164 | GGCGCAAGGATCGAA CTCCCAGGAAGTGC TGCG GCAACTCCTGGGAA ACACCAATATAAAAT CJA_1868 2141475 - 2143934 + | TonB-dependent receptor protein TERM 2803 2143961 - 2143990 + T 100 -15.9 -3.12351 | opp_overlap 2143967, overlap 2143964 GTTTGATAGGCAGCC CAAGCATCTACAC TTAT GTGTGGATGCTTG TTACATATGGAGGGG TERM 2804 2143964 - 2143987 + T 93 -11.8 -3.70773 | opp_overlap 2143967, overlap 2143961 TGATAGGCAGCCCAA GCATCTACAC TTAT GTGTGGATGC TTGTTACATATGGAG CJA_1869 2144984 - 2144013 - | lipase/esterase family protein CJA_1870 2156880 - 2145037 - | amino acid adenylation domain protein TERM 2805 2146455 - 2146436 - G 72 -10 -3.41051 | overlap 2146440 CCATCCCGACGATAA CGAACCAG ATCA CCGGTTCG ATACAGCCGCTCACC TERM 2806 2148234 - 2148208 - G 79 -10.2 -3.82084 | opp_overlap 2148208 2148213 2148215, overlap 2148201 2148213 TTGCAATAGCAACAA CCAAACGCCTTG AAT CAAGGTATTTGG TGTGATGCGATGACG TERM 2807 2149961 - 2149943 - G 81 -13.2 -2.71268 | overlap 2149940 CTCCATGACACACCA TCCACCAC CAG GTGGTGGA TCACCAGCAATAAAC TERM 2808 2150253 - 2150271 + g 80 -11.8 -3.36289 | opp_overlap 2150245 2150266 CATGCAATGGCTTGA TCGGTGTT AAT AACACCGA TTGATTCCAATGGTG TERM 2809 2154090 - 2154105 + g 72 -4.7 -4.6644 | overlap 2154099 CCTGAACAACAGCCT CTTGC ACTTCG GCAAG TTTTTGCAGTGTGTT TERM 2810 2156707 - 2156697 - G 70 -5.4 -4.3467 | overlap 2156698 ACTGCCATAGGAAAA GCAA CCG TTGC TGCGCGTAGGAAAGT CJA_1871 2168228 - 2156883 - | amino acid adenylation domain protein TERM 2811 2158940 - 2158914 - G 74 -11 -3.25802 | opp_overlap 2158910, overlap 2158906 2158915 CAGCAAACCGATCAA TTGTTGATTCAG TTG CTGAATCAACAC ATGCTGAAATTGGTG TERM 2812 2158939 - 2158915 - G 90 -14.5 -2.54999 | opp_overlap 2158910, overlap 2158914 2158906 AGCAAACCGATCAAT TGTTGATTCAG TTG CTGAATCAACA CATGCTGAAATTGGT TERM 2813 2160146 - 2160117 - G 81 -10.7 -3.64283 | overlap 2160119 CAAACTGTGGAACAA CATCCCCTGCTGC ATCG GCGACAGGGGATA AATATCGTCAATCTC TERM 2814 2160144 - 2160119 - G 76 -11.1 -3.39556 | overlap 2160117 AACTGTGGAACAACA TCCCCTGCTGC ATCG GCGACAGGGGA TAAATATCGTCAATC TERM 2815 2161168 - 2161144 - G 71 -10.7 -2.94218 | ATGCGCCAGGACACA CCGTCCACCAC CAG GTGATGGATGG CCAGCAACAAACGCT TERM 2816 2161999 - 2161978 - G 74 -6.5 -4.56775 | gap 1 ACCTCGGCGCAAAAA TGGTTGCGGG CGT CCCGCT-CCA CGTCGGTATCACCGG TERM 2817 2162040 - 2162071 + g 70 -10.2 -3.20382 | gap 1, overlap 2162064 TGTATTGGTTGGCAC CAGGTAGGCCACCAG TTG CTGCTGGC-TGCCTG TTCCTGCCTGTGCAA TERM 2818 2162705 - 2162721 + g 78 -5.2 -4.83615 | GATTCACAATGCTGA TATCCT GTTGG AGGATA TTTTTATAAAGCGTG TERM 2819 2168072 - 2168049 - G 73 -3.8 -4.83615 | overlap 2168050 CAGTTGCCATAAAAA CCACATGCGC TGCT GTGCATATGA CAATTGCGTGCGACC CJA_1872 2169467 - 2168487 - | putative syrP protein CJA_1873 2170247 - 2169489 - | thioesterase TERM 2820 2170049 - 2170037 - G 70 -4.8 -4.57341 | AACTGTGGCCAAAAA CAGC ATATG GCTG GTTGCCTATCCGCTG CJA_1874 2170537 - 2170256 - | MbtH-like protein-related protein TERM 2821 2170376 - 2170402 + g 79 -2.2 -5.24531 | overlap 2170379 2170381 GCGCATATCTGTCCA GACTTCTTCGAT ATA GTCGAGGCATTC TTTTTTGTAGCCACT TERM 2822 2170603 - 2170579 - R 76 -4.3 -5.03314 | overlap 2170583 CTTATTCGCAAAAAA GTAATCCTCAA TTC TTGAGGATAAA CGAATAAAAATTGAT TERM 2823 2170599 - 2170583 - R 80 -9.5 -3.93166 | overlap 2170579 TTCGCAAAAAAGTAA TCCTCAA TTC TTGAGGA TAAACGAATAAAAAT CJA_1875 2172021 - 2170624 - | diaminobutyrate-2-oxoglutarate transaminase CJA_1876 2172914 - 2172054 - | hypothetical protein TERM 2824 2172430 - 2172412 - G 75 -7.3 -4.37198 | AAGGGAAATGGAAAA GGGCCTG TTGAC CCGGCCC TGGCAGCGTATTCCC TERM 2825 2172457 - 2172481 + g 91 -3.4 -5.52384 | overlap 2172459 TCCCATTCTGCTTCA CTGGGCAGGC GATAG GTCTTCCCCG TTTTTTTGGTCAGCC TERM 2826 2172587 - 2172601 + g 78 -12.8 -2.89564 | overlap 2172588 TGCCATCCGTACACG CCCGCC CCG GGCGGG TATCTCCACTGCGGC CJA_1877 2173005 - 2173130 + | hypothetical protein CJA_1878 2186304 - 2173189 - | AMP-binding enzyme domain protein TERM 2827 2173947 - 2173931 - G 81 -7.2 -4.65078 | overlap 2173932 2173933 ATATTGGGAATAAAA GCGCGC GCAGT GCGCAC CGGATCAGCGAGGTA TERM 2828 2176500 - 2176519 + g 81 -9.2 -4.03234 | GTGCCAGGGGGAAGT CGGATGGC GTCA GCCCTCCG TTTGTATCCACCAAA TERM 2829 2179155 - 2179145 - G 77 -3.2 -5.10461 | TTGATGGAATAAAAA TGCA GCT CGCA GTCGTCGTCACGCAT TERM 2830 2182522 - 2182503 - G 71 -9.2 -3.47349 | overlap 2182497 2182500 2182496 CGTGCAAATCCACAA CTGGCGGG GTCA CCGGCCAG TTAGCCAACTCTAGT CJA_1879 2186642 - 2186535 - | hypothetical protein psbS 2186645 - 2187265 + | PsbS TERM 2831 2187774 - 2187755 - T 100 -12.2 -5.626 | GACCCCATAAAAAAA GAAGCAGC CTTG GCTGCTTC GCGAAATCGGGCTAG CJA_1881 2188160 - 2187798 - | hypothetical protein mal77Q 2189736 - 2188201 - | 4-alpha-glucanotransferase, putative, mal77 TERM 2832 2188485 - 2188475 - G 72 -5.4 -4.56597 | TGTTGTCGCGAAAAA TCGT TTA ACGA CGCATACCAACCCAG TERM 2833 2189756 - 2189744 - R 79 -4.1 -5.21709 | CTCGACATGAAAAAA TTCCC CGA AGGAA AAGCAAGTTGATGAA gly57A 2191515 - 2189791 - | glycoside hydrolase, putative, gly57A TERM 2834 2191236 - 2191262 + g 77 -11.7 -3.20078 | opp_overlap 2191243, overlap 2191240 GCAAGGCGATGTCGG TTAAGGATGCC AGGAC GGCATCCTTGA TGTTGGTGTGCGATG TERM 2835 2191240 - 2191258 + g 72 -10.3 -3.40907 | opp_overlap 2191243, overlap 2191236 GGCGATGTCGGTTAA GGATGCC AGGAC GGCATCC TTGATGTTGGTGTGC glgC 2192776 - 2191508 - | glucose-1-phosphate adenylyltransferase TERM 2836 2191619 - 2191629 + g 70 -6.8 -4.13945 | GTAACCGATTACGGT TCCC TCG GGGA TTTTGCAATAGCGAT TERM 2837 2191941 - 2191957 + g 76 -12.3 -2.62396 | overlap 2191943 GCCAGCTCCAGGTTG GACTCCC ACA GGGAGTC TACTGTCCCCACATC TERM 2838 2192004 - 2192030 + g 74 -6.5 -4.49314 | opp_overlap 2192000, overlap 2192001 CCACCGGAAACCGGA TCGCGGAATGG GAAGG CCATCACGCGA TTGTTTTTAATCATG TERM 2839 2193988 - 2194013 + G 70 -11.1 -2.70022 | opp_overlap 2193988, overlap 2193987 TGAGTTTTTAAGTTA TCGCGAGCTGG CCCA CCAGCTGGCGG ATTATGTGAAATACA gbe13A 2193152 - 2195365 + | 1,4-alpha-glucan branching enzyme, putative, gbe13A TERM 2840 2195387 - 2195410 + F 95 -13.2 -4.18018 | GAGCAAGCTATTGCC GCATCGAGCG TATC TGCTCGATGC TTTTCCATCAACGAC TERM 2841 2195956 - 2195968 + G 74 -2.6 -5.14563 | ACCATTCACAACCTT GCCT ATCGC GGGC TTTTTTCCTACCAGG TERM 2842 2196869 - 2196859 - g 72 -6.8 -4.25074 | GAGCAAAGCGCAAAA GCCT ATG AGGC GATCTACGCAAATCT gt5A 2195449 - 2196894 + | ADP-glucose:starch glucosyltransferase, gt5A TERM 2843 2198461 - 2198437 - g 91 -2.8 -5.48063 | gap 1, overlap 2198449 2198452 AGCGAACAGAAAAAA GCCCTGGCAAA ATTA TCTGCC-GCGC AAATTACCTCTACCG pgm 2197057 - 2198697 + | phosphoglucomutase, alpha-D-glucose phosphate-specific TERM 2844 2198745 - 2198709 - T 100 -21.2 -2.92463 | opp_overlap 2198719 2198744, overlap 2198719 CTGATTATCGACAGA CCTAAAAAAACCGCTG ATTTA CAGCGGTTTTTTTAGG TCCAGTGACAACACT TERM 2845 2198719 - 2198735 + T 100 -9.4 -5.47218 | opp_overlap 2198709 2198719 ACAGACCTAAAAAAA CCGCTG ATTTA CAGCGG TTTTTTTAGGTCCAG TERM 2846 2198735 - 2198719 - T 100 -9.4 -5.51402 | opp_overlap 2198719, overlap 2198709 ACAGACCTAAAAAAA CCGCTG ATTTA CAGCGG TTTTTTTAGGTCCAG uvs037 2199830 - 2198760 - | Uvs037 TERM 2847 2199523 - 2199506 - G 70 -5.5 -4.34263 | overlap 2199507 CCGCAACAATAGAAA CCCCCAC CATA ATGGGGA CATCCTGGCGAATCA CJA_1889 2200750 - 2199887 - | cupin-fold protein CJA_1890 2201214 - 2200816 - | possible hydrolase CJA_1891 2201599 - 2201222 - | glutaredoxin NrdH-related protein TERM 2848 2201531 - 2201519 - G 78 -5.5 -4.74504 | ATGCCAATTCAAAAA CACAC CCA GTGCG ACCAGCAAAAATAGA CJA_1892 2202108 - 2201587 - | P(-)rp(+) fimbrial protein CJA_1893 2202370 - 2202086 - | hypothetical protein TERM 2849 2202376 - 2202403 + r 100 -9.8 -4.95758 | opp_overlap 2202376 AAGTGTACAAAAAAA TCCCCCACTTGC CTGC GCAAGCGAGGGA TTTTTGTGATCTGGT TERM 2850 2202403 - 2202376 - R 100 -14.2 -5.63504 | opp_overlap 2202376 AAGTGTACAAAAAAA TCCCCCACTTGC CTGC GCAAGCGAGGGA TTTTTGTGATCTGGT CJA_1894 2203789 - 2202434 - | MiaB-like tRNA modifying enzyme YliG, TIGR01125 TERM 2851 2203490 - 2203501 + g 71 -2.2 -5.00616 | ATTGGGGTGAACCTG GATG ATCT CGTC TTTTTTGGCACCGAG CJA_1895 2204578 - 2203898 - | hypothetical protein TERM 2852 2204245 - 2204259 + g 88 -2.1 -5.60689 | gap 1, opp_overlap 2204242, overlap 2204242 2204243 TTGAGGAAACCACCA GCGAGC TCTG GCT-GC TTTTTTGTTGTGTCG patB 2205936 - 2204764 - | Aminotransferases class-I CJA_1897 2206993 - 2205995 - | response regulator CJA_1898 2210691 - 2206993 - | putative sensory box histidine kinase/response regulator TERM 2853 2208804 - 2208814 + g 75 -6.8 -4.42238 | opp_overlap 2208798 TATAAATAGCCTGAA CCCA GAT TGGG TTTTCATTGCAATCG TERM 2854 2209341 - 2209318 - G 74 -8.1 -4.03413 | ATGCCCGGACATAAA GTCGCTGGC AGGCCA GCCAGTGAC CCGCTGTACCGCATC CJA_1899 2212962 - 2210788 - | Generic methyltransferase TERM 2855 2211462 - 2211449 - G 81 -6.7 -4.60041 | AGTGATTTGGAAAAA TTCGG CACA CCGAA ATACTCATCACCGTA TERM 2856 2211632 - 2211586 - G 72 -5.2 -4.58395 | gap 2 TGCATGTTGGAAAAA GTGGCGACGAAATGCGTAGCGC GAAGT GTGC-AGGC-TTTCGTTGCCAC AGGAAATCCAGGAAC TERM 2857 2212188 - 2212168 - G 71 -3.2 -4.7339 | opp_overlap 2212169 2212170, overlap 2212159 2212169 2212170 AACAAACTGCAAAAA CTCCTGGT TACTG ACCAGGTA TTTTGCGGCGTCAAA TERM 2858 2213042 - 2213022 - R 87 -9.7 -4.36914 | overlap 2213024 2213033 TCCCGCCCCACAAAA TCCCTGGCA AAT TGCCAGGCA ACACGGCCGCTGCGG TERM 2859 2213040 - 2213024 - R 78 -12.3 -2.52946 | overlap 2213022 2213033 CCGCCCCACAAAATC CCTGGCA AAT TGCCAGG CAACACGGCCGCTGC CJA_1900 2213854 - 2213003 - | hypothetical protein TERM 2860 2214065 - 2214050 - g 72 -4.6 -4.63486 | overlap 2214051 ATTGGTTCAATAAAA GCCTGG GTAG CCAGGA TCAACTGACCAATAA CJA_1901 2213980 - 2214663 + | chemotaxis protein CheY CJA_1902 2218339 - 2214686 - | hypothetical protein TERM 2861 2215685 - 2215666 - G 71 -2.1 -4.97158 | CGACATCAAACAAAA TTGTGTC TACATT GCCACAA AACTGGTTGTGCTGC TERM 2862 2216085 - 2216097 + g 82 -7.7 -4.50976 | TGTTGCAGCTTGGCA TCCAG CGC CTGGA TTTTATGCTGTGCCG TERM 2863 2217201 - 2217219 + g 76 -3.8 -4.92756 | overlap 2217202 2217203 2217205 TCCGGTATTTGGGTT TGCAGGAA TTT TTCCTGGG TTTGTTTTTCCTGCT TERM 2864 2217693 - 2217681 - G 81 -6.9 -4.6526 | opp_overlap 2217683 ATAAAGCGGGAAAAA GCGCG CGC CGCAC TCATGGCTTCGCGCT TERM 2865 2217842 - 2217855 + g 91 -3.1 -5.5604 | overlap 2217842 TTTATCCAGGGGCAT CACAT ACTT GTGTG TTTTTTCTTCCTTGA CJA_1903 2219106 - 2218342 - | hypothetical protein CJA_1904 2220566 - 2219103 - | hypothetical protein TERM 2866 2219894 - 2219908 + g 72 -6.4 -4.32436 | overlap 2219902 CGCCCTGGCCATATT TTCGCT TGC GGCGAA TTTTAGTGATGATAT CJA_1905 2221050 - 2220658 - | hypothetical protein hemB 2222012 - 2221041 - | delta-aminolevulinic acid dehydratase CJA_1907 2222457 - 2222032 - | hypothetical protein slt23E 2223096 - 2222476 - | lytic murein transglycosylase, putative, slt23E ligA 2225135 - 2223093 - | DNA ligase, NAD-dependent TERM 2867 2225176 - 2225204 + r 70 -8.8 -3.33696 | overlap 2225172 ACAATTCATGTCTGT GCAGGCCGCACA CTCCT TGTGCCGGCTGC TTGCTTAACGGGGGC zipA 2226384 - 2225209 - | cell division protein ZipA TERM 2868 2225321 - 2225340 + g 70 -6.4 -4.16943 | TCTTTTAATTCACCA TCCAGTGC GTCT GCAATGGA TTTTGCCGTCTCAAC TERM 2869 2226069 - 2226096 + g 84 -7.8 -4.59773 | gap 1 AAGGACGACGCGGCT CAACAGGTGCCAG TGG TTGGCGC-TGTTG TTTTTCCAGATAGGA smc 2229920 - 2226411 - | chromosome segregation protein SMC TERM 2870 2227408 - 2227429 + g 70 -5.8 -4.15044 | opp_overlap 2227424 GCCACCAGTTGCTCC CGGCGC TCCTGCAAAC GCGCCG TTTGTTCACGCAACC TERM 2871 2227686 - 2227702 + g 72 -8 -3.9941 | CTCCTGCTCCATTTG TTCGCG CGCTT CGCGAA TTTCATTATCGAGGC TERM 2872 2227828 - 2227843 + g 70 -10.4 -3.17051 | overlap 2227812 2227826 CGGCGCAGTTGTTCA CGCTGG TTTT CCAGCG TCTTGATAGTGGAGC TERM 2873 2229969 - 2229949 - R 72 -8.9 -3.61178 | opp_overlap 2229966 TCTACTCATTCGAAA CGGGTGTCC ACT GATCACCCG CGCCTGGTTTTACTA ccmI 2231575 - 2230283 - | cytochrome c-type biogenesis protein CcmI TERM 2874 2230520 - 2230530 + g 70 -6.8 -4.11484 | TTTGATGCGGGTAAT TGCC AAA GGCA TTTTGGGCCCTTGCC CJA_1913 2232357 - 2231575 - | Cytochrome c-type biogenesis protein cycL precursor TERM 2875 2232632 - 2232597 - R 82 -7.5 -4.60487 | gap 1, opp_overlap 2232615 GACGACCTGCAAAAA GCCGAGC-AAGCCCCC TACCC GGGAACGCAGCTCGGC TTTTTTGTTATGCAG TERM 2876 2232709 - 2232694 - R 100 -10.4 -5.95946 | opp_overlap 2232693 2232692 2232696 GCAACAATAAAAAAA GAGGCG TTTC CGCCTC CCTTTACTTTTCGTT fliD 2234843 - 2232789 - | Flagellar hook-associated protein 2 TERM 2877 2233171 - 2233159 - G 75 -6.9 -4.4078 | overlap 2233142 2233160 TTGCCGTAACCAAAA GCGGC AAC ACCGC CGACAGTACCTGCAA TERM 2878 2233963 - 2233942 - G 70 -5.1 -4.386 | TAAGCTGTGACAAAA TCGCGAATA GCAG TTTCCGCGA CGGTTTTATCCTCGG TERM 2879 2235059 - 2235004 - R 86 -11.3 -3.67052 | gap 1, opp_overlap 2235024, overlap 2235024 ACATTTTTAATATAA CCAGGGCCTCGAACAAAAAACCGCAG TCAAG CTGCGGTTTTTTGTT-GATCACCGGG CGATTAACGCAAAAG TERM 2880 2235040 - 2235024 - R 100 -9.4 -5.4505 | opp_overlap 2235024, overlap 2235004 GCCTCGAACAAAAAA CCGCAG TCAAG CTGCGG TTTTTTGTTGATCAC TERM 2881 2235024 - 2235040 + r 100 -10.1 -5.5112 | opp_overlap 2235004 2235024 GCCTCGAACAAAAAA CCGCAGT CAA GCTGCGG TTTTTTGTTGATCAC flaA 2237090 - 2235063 - | flagellin TERM 2882 2236275 - 2236301 + g 78 -9.4 -3.86944 | CTGGGTATTTGTTAC CTGGATGACGCT GGT AGAGCCATCCAG TTTGGTGATTGTCAC TERM 2883 2236536 - 2236521 - G 72 -10.4 -3.38072 | opp_overlap 2236528 TTCATTCAATACCAA GGCAGG AGGA CCTGCC AGATCCATTTCACCC TERM 2884 2237254 - 2237236 - R 73 -7.4 -4.17132 | opp_overlap 2237236 2237235, overlap 2237224 AAATTTGCTAACAAA CCGGTTTG TTA CAAACAGG ATTTCTATACGGGCC TERM 2885 2237451 - 2237468 + r 88 -7.7 -4.96848 | opp_overlap 2237451 TTGGGATAAAAAAAA GAGCAGT CTAT GCTGCTC TTTTTATGTGGCACA TERM 2886 2237468 - 2237451 - R 100 -7 -5.93809 | opp_overlap 2237451 TTGGGATAAAAAAAA GAGCAG TCTATG CTGCTC TTTTTATGTGGCACA CJA_1918 2237942 - 2237535 - | FlaG TERM 2887 2237816 - 2237833 + g 83 -5.5 -5.09426 | overlap 2237817 CCGCTTCGACGGCAG GCGGCAA AGGA TTGCCGG TTTTTTGACCTTGCC TERM 2888 2237817 - 2237832 + g 73 -9 -3.64933 | overlap 2237816 CGCTTCGACGGCAGG CGGCAA AGGA TTGCCG GTTTTTTGACCTTGC TERM 2889 2237912 - 2237888 - G 100 -16.5 -3.84961 | opp_overlap 2237880 2237878 2237877 CAGGCAACGACGAAA CCGGCACAGAC TTG GTCTGTACCGG GGTCGAAGTGATTTT TERM 2890 2237964 - 2237992 + r 100 -18.1 -3.08283 | opp_overlap 2237968 GTCCTCACTTGTTAA CCCACCCTGCCCT TGT GGGGCCGGGTGGG TGTTAGCCTGATTAT CJA_1919 2240100 - 2238004 - | flagellin CJA_1920 2240793 - 2240317 - | hypothetical protein flgL 2242405 - 2240816 - | flagellar hook-associated protein type 3 FlgL flgK 2245273 - 2242502 - | flagellar hook-associated protein 1 FlgK TERM 2891 2243696 - 2243686 - G 70 -6.8 -4.09685 | TGTCACTCGTGAAAA CAGC ATT GCTG GTACCGGGGATAAAA acm73B 2246414 - 2245278 - | endo-beta-N-acetylglucosaminidase, putative, acm73B flgI 2247551 - 2246415 - | flagellar P-ring protein FlgI flgH 2248253 - 2247564 - | flagellar L-ring protein FlgH flgG 2249053 - 2248268 - | flagellar basal-body rod protein FlgG flgF 2249985 - 2249098 - | flagellar basal-body rod protein FlgF TERM 2892 2249316 - 2249326 + g 75 -5.4 -4.62069 | ATAAGCCGTCATCCC CCTT CTC AAGG TTTTTAACATCGGGG TERM 2893 2250053 - 2250030 - R 100 -14.6 -5.8096 | opp_overlap 2250033 CAGAAAAAATAAAAA GCAGCGGCAA ATCA CTGCCGCTGC TTGCCGCTGAGGTGG flgE 2252493 - 2250082 - | flagellar hook protein FlgE TERM 2894 2252135 - 2252123 - G 84 -7.7 -4.64676 | GCATCGGCAACAAAA CCTTG CAG CAAGG CGCCGGTACCATTAA flgD 2253225 - 2252530 - | flagellar basal-body rod modification protein FlgD flgC 2253688 - 2253242 - | flagellar basal-body rod protein FlgC flgB 2254124 - 2253723 - | flagellar basal-body rod protein FlgB CJA_1932 2254225 - 2254389 + | hypothetical protein CJA_1933 2255302 - 2254427 - | chemotaxis protein methyltransferase CheR TERM 2895 2255025 - 2255042 + g 74 -9.9 -3.47322 | overlap 2255039 TAGGGGTAGATGTCG CGAAACC AGAA GGTTTCG TTGGTTGTCATGCAA TERM 2896 2255354 - 2255335 - R 93 -15 -3.07222 | opp_overlap 2255351 ATTACCACCTGAACA CCGGGAGC ATCC GCTCCCGG TATCGCGACCTATAC CJA_1934 2256339 - 2255377 - | chemotaxis protein CheV TERM 2897 2256395 - 2256384 - H 71 -7.2 -4.05446 | GGCCCCAACCAGAAA CCGG GATA CCGG CATAGTCTTTGCTTT TERM 2898 2256628 - 2256640 + G 76 -4.1 -4.95155 | ATTTGCCGCACTCTT CATCA GTT TGGTG TTTTTATGCTCTAGC CJA_1935 2256545 - 2257315 + | putative flagella basal body P-ring formation protein FlgA TERM 2899 2257411 - 2257401 - f 71 -6.8 -4.09739 | GTAAGCGCCCTAAAA TCCG TCT CGGA CAAGCCAATATCAAG CJA_1936 2257490 - 2257804 + | putative negative regulator of flagellin synthesis FlgM TERM 2900 2257928 - 2257908 - g 76 -11.1 -3.35813 | overlap 2257909 CTTGATGCTAACCAA TTGCGCCAG ATG CTGGCGCAG GATACCGACGCTGTC TERM 2901 2257927 - 2257909 - g 90 -14.6 -2.61274 | overlap 2257908 TTGATGCTAACCAAT TGCGCCAG ATG CTGGCGCA GGATACCGACGCTGT TERM 2902 2257972 - 2257957 - g 72 -6.8 -4.15565 | overlap 2257958 TCCATCAGCTCAAAA CCCTGC TTCT GCAGGA GCGCGATTTACTTCC TERM 2903 2258061 - 2258032 - g 95 -6.6 -5.4505 | gap 1, overlap 2258033 2258034 TCCTCGAACAAAAAA CGGTATTGGTTGA CCAGC TCAACCAACAC-G CCCAGATTCGCCAGC CJA_1937 2257887 - 2258363 + | FlgN protein superfamily TERM 2904 2258418 - 2258386 - f 86 -14.3 -2.52464 | TCTGCTGCTAATCCA TGCCCTGTTGACA GCCCCAT TGCCAACAGGGCA ACACAATCTGCGCTA CJA_1939 2258611 - 2259336 + | conserved hypothetical protein TIGR00046 TERM 2905 2259391 - 2259363 - f 70 -4.7 -4.41633 | CATTGCGAAAAACAA CAAAAAACGCACA AAA CGTACATTTTTTA TATTCACAAGCCTAA TERM 2906 2259551 - 2259586 + G 74 -8.2 -3.93984 | gap 1, overlap 2259529 CGATCCCGATTGGGG GCGCCAGGCTTATCGCC AAG GGC-ATATTCCCGGCGC TTTCTACCTGCATTT CJA_1940 2259453 - 2260274 + | thiosulfate sulfurtransferase TERM 2907 2260323 - 2260296 - T 100 -17.2 -4.07568 | opp_overlap 2260296 2260301, overlap 2260301 CTCTTCCCCTGAAAA TAAAACGGAGGC AATT GCCTCCGTTTTA TTTTGCATCAATGAC TERM 2908 2260296 - 2260323 + T 100 -17.2 -4.19817 | opp_overlap 2260296 2260301, overlap 2260301 CTCTTCCCCTGAAAA TAAAACGGAGGC AATT GCCTCCGTTTTA TTTTGCATCAATGAC TERM 2909 2260318 - 2260301 - T 100 -12.7 -5.07652 | opp_overlap 2260296 2260301, overlap 2260296 CCCCTGAAAATAAAA CGGAGGC AATT GCCTCCG TTTTATTTTGCATCA TERM 2910 2260301 - 2260318 + T 100 -12.7 -5.10933 | opp_overlap 2260301 2260296, overlap 2260296 CCCCTGAAAATAAAA CGGAGGC AATT GCCTCCG TTTTATTTTGCATCA CJA_1941 2261036 - 2260338 - | hypothetical protein phrB 2262673 - 2261243 - | deoxyribodipyrimidine photolyase TERM 2911 2261473 - 2261461 - G 75 -4.8 -4.8083 | opp_overlap 2261470, overlap 2261451 2261471 2261472 TAATAGGATTAAAAA CCCT GAAAT AGGG AGCCGCATCGGTTCC CJA_1943 2263844 - 2262858 - | hypothetical protein TERM 2912 2263988 - 2263971 - g 100 -8.4 -5.89827 | opp_overlap 2263970 2263971 AAGGATGAAAAAAAA CCGGCA TTTTAT TGCCGG CCTTTTAATTTTCAG CJA_1944 2263917 - 2264009 + | hypothetical protein cysB 2264992 - 2264018 - | transcriptional regulator CysB TERM 2913 2265233 - 2265221 - R 82 -2.6 -5.51165 | overlap 2265211 AAAATGCGAAAAAAA GGCG AAAGA CACC CTTTATTGGCTATAT ushA 2266171 - 2265266 - | 5-nucleotidase TERM 2914 2265688 - 2265673 - G 83 -5.4 -5.0538 | gap 1, overlap 2265674 2265676 CCTCATCCGAAAAAA GTACGGC ATC GCCGT-C AAATGCAAAGCGCAA TERM 2915 2265873 - 2265861 - G 74 -3.3 -4.91109 | opp_overlap 2265861, overlap 2265862 GTTCCACCACAAAAA GCAGC ACG GCTGA TCTTGAGGCCATAAT CJA_1947 2266981 - 2266211 - | carbon-nitrogen hydrolase family protein TERM 2916 2266638 - 2266623 - G 72 -10.4 -3.32844 | opp_overlap 2266637 TTTCCCATGGCATAA CGGGTG TGCT CACCCG CCATGCGGAACAAAT CJA_1948 2268173 - 2266974 - | putative transporter TERM 2917 2267323 - 2267307 - G 72 -10.1 -3.30554 | overlap 2267308 2267310 GTAACCAATCACCAA CCAGCGG ACA CCGCTGA GCAGCAGTGTCCACA TERM 2918 2267322 - 2267308 - G 73 -11.4 -2.5785 | overlap 2267307 2267310 TAACCAATCACCAAC CAGCGG ACA CCGCTG AGCAGCAGTGTCCAC TERM 2919 2267337 - 2267310 - G 85 -14.2 -2.82082 | overlap 2267308 2267307 ACCAATCACCAACCA GCGGACACCGCT GAGC AGCAGTGTCCAC AACATCAATTGGCGC TERM 2920 2268198 - 2268216 + r 100 -16 -3.72576 | opp_overlap 2268198, overlap 2268211 GCTAAAAATAACAAA GGCGCAGC ATG GCTGCGCC TTTCGTCGACAAGGC TERM 2921 2268216 - 2268198 - R 100 -16 -4.76802 | opp_overlap 2268198 2268211 GCTAAAAATAACAAA GGCGCAGC ATG GCTGCGCC TTTCGTCGACAAGGC aroC 2269337 - 2268237 - | chorismate synthase TERM 2922 2268701 - 2268715 + g 72 -6.4 -4.41633 | ATCCTGGCGGTACGC CGGTAG CTA CTACTG TTATTTTTGCGCCTA CJA_1950 2270347 - 2269439 - | modification methylase, HemK family TERM 2923 2269505 - 2269495 - G 74 -2.4 -5.04325 | overlap 2269496 CCGAAAGGACAAAAA CGCC GTG GCCG CCATTTTCAAACTCA TERM 2924 2269959 - 2269993 + g 93 -8.5 -5.00642 | opp_overlap 2269932 2269959 CACAAATCCAGGATA CGTTCCGGGCTCTGG ATCAA CCAGGGCTCAAAACG TTTTTGTATCAGTTC TERM 2925 2271042 - 2271052 + G 90 -6.8 -5.03945 | opp_overlap 2271042 GCACCAACCAGGCAA CTCG CAA CGAG TTTTTATCATTATTG folE 2270534 - 2271073 + | GTP cyclohydrolase I CJA_1952 2272066 - 2271146 - | Serine/threonine protein phosphatase TERM 2926 2271567 - 2271577 + g 80 -5.4 -5.00884 | GCTCGGGTAATAAGG TTGC GCT GCAA TTTTTTCGCCCCACT CJA_1953 2273027 - 2272125 - | hypothetical protein TERM 2927 2272559 - 2272544 - G 72 -6 -4.43877 | overlap 2272546 CAAGTTGCAAATAAA CCCGGC GATT GCCGCG CTGCACAACATAGAG CJA_1954 2273932 - 2273036 - | hydrolase, alpha/beta fold family sixA 2274442 - 2273975 - | phosphohistidine phosphatase SixA CJA_1956 2274792 - 2274442 - | possible lipase TERM 2928 2274468 - 2274484 + g 70 -6.5 -4.21933 | CCGTTTCATCGGCGG GGAGCTG CTC TGGCTCC TTGTTTTCGGCTTGC CJA_1957 2275844 - 2274822 - | NAD-dependent glycerol-3-phosphate dehydrogenase CJA_1958 2276877 - 2276380 - | Potential flavoprotein oxygenase, DIM6/NTAB family CJA_1963 2277607 - 2279712 + | outer membrane iron(III) dicitrate receptor TERM 2929 2279743 - 2279767 + F 100 -15.8 -5.07567 | opp_overlap 2279746 GCACTTGAATACCGA CAATCCCGCG CTTGA CGCGGGATTG TTTTTTAACCTCTGC TERM 2930 2279764 - 2279746 - f 85 -12.4 -3.42503 | opp_overlap 2279743 CTTGAATACCGACAA TCCCGCGC TTG ACGCGGGA TTGTTTTTTAACCTC folD 2279882 - 2280724 + | bifunctional protein 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase TERM 2931 2280851 - 2280815 - g 85 -11.6 -3.67597 | gap 1, opp_overlap 2280820, overlap 2280816 2280820 GCTGGCAGTTAACAA GCCAACCGGGCTGCTGG TTCA CC-GCAGCCCGATTGAT CGCCACGAAACCCGC TERM 2932 2280850 - 2280816 - g 90 -15.1 -2.80344 | gap 1, opp_overlap 2280820, overlap 2280815 2280820 CTGGCAGTTAACAAG CCAACCGGGCTGCTGG TTCA CC-GCAGCCCGATTGA TCGCCACGAAACCCG TERM 2933 2280846 - 2280820 - g 83 -12.3 -3.29459 | gap 1, opp_overlap 2280820, overlap 2280816 2280815 CAGTTAACAAGCCAA CCGGGCTGCTGG TTCA CC-GCAGCCCGA TTGATCGCCACGAAA TERM 2934 2280820 - 2280846 + G 70 -10.1 -3.14132 | gap 1, opp_overlap 2280820 2280816 2280815 CAGTTAACAAGCCAA CCGGGCTGCTGG TTCA CC-GCAGCCCGA TTGATCGCCACGAAA CJA_1965 2280759 - 2281523 + | RNA pseudouridine synthase family protein rsuA1 2281520 - 2282224 + | ribosomal small subunit pseudouridine synthase A CJA_1967 2282205 - 2283278 + | putative ribosomal RNA small subunit methyltransferase C TERM 2935 2283384 - 2283374 - f 72 -5.4 -4.45945 | opp_overlap 2283374 ACTGAGCAACGAAAA CACA ACC TGTG GTTTTTCTGTACCAT TERM 2936 2283604 - 2283577 - f 81 -8.4 -4.46112 | opp_overlap 2283582, overlap 2283582 GCGGAGCCAAACAAA CGAAAGGCCGCA TTTA TGCGGCCTTTTT TGTGGCCGGCCGGTC TERM 2937 2283582 - 2283599 + F 100 -12.7 -5.24129 | opp_overlap 2283582 2283577 GCCAAACAAACGAAA GGCCGCA TTTA TGCGGCC TTTTTTGTGGCCGGC TERM 2938 2283599 - 2283582 - f 95 -12.7 -4.27211 | opp_overlap 2283582, overlap 2283577 GCCAAACAAACGAAA GGCCGCA TTTA TGCGGCC TTTTTTGTGGCCGGC CJA_1969 2283788 - 2284069 + | hypothetical protein TERM 2939 2284120 - 2284101 - T 76 -4.9 -4.87665 | opp_overlap 2284102, overlap 2284102 TCCCATCCATAAAAA GGCCACC GCTCAG GGTGGCT TTTTTATTACCCGCT TERM 2940 2284102 - 2284119 + T 100 -8.4 -5.4505 | opp_overlap 2284102 2284101 CCCATCCATAAAAAG GCCACC GCTCAG GGTGGC TTTTTTATTACCCGC CJA_1970 2285750 - 2284173 - | hydrolase, alpha/beta fold family domain protein CJA_1971 2286820 - 2285777 - | pseudouridine synthase Rlu family protein TERM 2941 2286353 - 2286320 - G 72 -7.4 -3.8613 | gap 1 GGCAAATACCAACAA CCCGG-ACGTCACCT TATCC AGGCGATGCACCGGG TAAAGCTGTGCATAA TERM 2942 2286470 - 2286448 - G 84 -10.6 -3.85698 | overlap 2286451 CCGGCTTTTTATAAA CCAGCAGGAA ATC TTCCTGCTCG TCCACTAACTGGAAA TERM 2943 2286467 - 2286451 - G 72 -10.9 -3.00946 | overlap 2286448 GCTTTTTATAAACCA GCAGGAA ATC TTCCTGC TCGTCCACTAACTGG TERM 2944 2287141 - 2287159 + G 71 -11 -2.91383 | overlap 2287143 GATCCATGGCCCTAT TACCCTGG GAG CCGGGGTA TCTATCAATCACCAT lacA 2286851 - 2287480 + | acetyltransferase, CysE/LacA/LpxA/NodL family TERM 2945 2287556 - 2287568 + G 100 -4.1 -5.61881 | CTGGCCATACTTACC TGGCT GGA AGTCA TTTTTATTTTTGCCG TERM 2946 2288789 - 2288773 - g 78 -5.1 -4.84359 | overlap 2288775 GCAGTGCCATAAAAA TACCTGC CCC ACAGGCA TTACGACGCACAATA CJA_1973 2287514 - 2289055 + | Ferredoxin-dependent glutamate synthase TERM 2947 2289408 - 2289429 + G 86 -12.3 -3.53091 | opp_overlap 2289392 CCATGGGGGTTGCCC TCGGCCAGG TTTT CCTGGCTGA TTTCCCGCAAACCCT TERM 2948 2289597 - 2289579 - g 85 -3.2 -5.45726 | opp_overlap 2289579 CAGATGTCAAAAAAA TCTATG TGGACGC CATAGA TTTGATGAAAGAATA CJA_1974 2289083 - 2289670 + | hypothetical protein CJA_1975 2289905 - 2290516 + | Uncharacterized protein family UPF0016 family CJA_1976 2291029 - 2290610 - | HIT-like protein TERM 2949 2290682 - 2290694 + g 77 -3.3 -5.03314 | AGTTTGTTTTAACAC TGCTG CAT CTGCA TTTTTTGCAAATGCA TERM 2950 2290809 - 2290787 - G 76 -11.2 -3.29096 | TCCAGCAATCATCAA CCCAACCCGC GTA GCGGGATAGG CCACTTTTAATCCAT mal77A 2291901 - 2291056 - | 4-alpha-glucanotransferase, putative, mal77A TERM 2951 2291286 - 2291273 - G 90 -8.1 -4.96848 | TCCGGCACATAAAAA TCGGC GACT GCCGA CTCCCTGCCCCACAC TERM 2952 2291936 - 2291957 + H 78 -5.1 -4.96501 | overlap 2291937 CAATACTGTGCCATT CTAGCGGTG TTTT TACCGCTAC TTTGTTTTTATGACC CJA_1978 2291990 - 2292445 + | YaiI/YqxD family protein superfamily TERM 2953 2294005 - 2293964 - g 70 -3.7 -4.69664 | gap 1, overlap 2293968 2293971 2293976 2293977 TATACCATCGAAAAA GCAAC-ACGCAAACCCATCA CAC TGATGGAGTTGCCCAGTGGC GCGACCGTAACCAAG TERM 2954 2294511 - 2294498 - g 74 -2.3 -5.09173 | overlap 2294499 CAACACTTGAAAAAA GTGCG TGTA CGCAA TCGCCCGCTGGAAAT deaD-1 2292809 - 2294686 + | ATP-dependent RNA helicase DeaD TERM 2955 2294733 - 2294714 - T 100 -16.4 -5.42862 | opp_overlap 2294714 AGACCTGCAAAAAAA CGCCGCGC AATT GCGCGGCG TTTGTCATTATAGGT TERM 2956 2294714 - 2294733 + T 100 -16.4 -4.10612 | opp_overlap 2294714 AGACCTGCAAAAAAA CGCCGCGC AATT GCGCGGCG TTTGTCATTATAGGT CJA_1980 2295043 - 2294762 - | hypothetical protein hepA 2297990 - 2295057 - | RNA polymerase-associated protein HepA TERM 2957 2296034 - 2296051 + g 74 -3.4 -5.00884 | gap 1, opp_overlap 2296024 AACGACTATAGACCG CCTG-GC CAATA GCACAGG TTTTTTCAAACGCAT TERM 2958 2298974 - 2298928 - g 100 -14.4 -3.43264 | AATCACCCAGCATAA TTGCCCCAGCGTCATTACCTGG AAC CCAGGCGATGAAGCGGCGGCAA ACATTGCGGACATTG CJA_1982 2298176 - 2299105 + | aldose 1-epimerase family protein TERM 2959 2299154 - 2299123 - T 100 -17.4 -5.43866 | opp_overlap 2299123 CAACCTGTAAAAAAA CAAAGCCGCTGTTC GCGA GAGCAGCGGCTTTG TTTTTTAATGCCAGG TERM 2960 2299123 - 2299154 + T 100 -19.6 -5.14563 | opp_overlap 2299123 CAACCTGTAAAAAAA CAAAGCCGCTGTTC GCGA GAGCAGCGGCTTTG TTTTTTAATGCCAGG mdh 2300157 - 2299174 - | malate dehydrogenase TERM 2961 2299946 - 2299932 - G 70 -10 -3.17571 | overlap 2299936 AATCTTTGAAGGCAA CTGACG GAT CGTCAG TAGTAACAATGCCGG TERM 2962 2300689 - 2300701 + G 70 -4.8 -4.56914 | overlap 2300693 ACCTGCAAGATGTTC TCGG CAAAA CCGA TTTTGATTTCAATAC TERM 2963 2302137 - 2302121 - g 70 -10.9 -2.80821 | overlap 2302118 2302114 CGTCGAAACACAGGA GCAGGAA AAT TTCCTGC GCGACAGTGCCTGCG CJA_1985 2300487 - 2302274 + | sensory box/GGDEF family protein dut 2302894 - 2302271 - | dUTPase CJA_1986 2303736 - 2302933 - | deoxyribonuclease, TatD family TERM 2964 2303461 - 2303480 + g 76 -3.5 -4.90266 | overlap 2303447 CCCCAGGGCAACCAC CTTGGGT TGTGCC GCCCAGG TTTTTAGTTGCTCAA CJA_1987 2304040 - 2303741 - | hypothetical protein TERM 2965 2303809 - 2303792 - G 72 -4.7 -4.66833 | overlap 2303794 TGCCAAGGCCAAAAA CAGGAGC ATAG GCCCCAG ACTGACTGGCCCGGC TERM 2966 2304034 - 2304010 - G 100 -17.3 -4.06687 | opp_overlap 2304014, overlap 2304014 ACTCCCCACAAATAA CAAAGCCAGGT ATA ACCTGGCTTTG CAGCAATATCGCAAG TERM 2967 2304030 - 2304014 - G 100 -12.3 -4.63048 | opp_overlap 2304014, overlap 2304010 CCCACAAATAACAAA GCCAGGT ATA ACCTGGC TTTGCAGCAATATCG TERM 2968 2304014 - 2304030 + g 86 -12.3 -3.55071 | opp_overlap 2304014 2304010 CCCACAAATAACAAA GCCAGGT ATA ACCTGGC TTTGCAGCAATATCG pilZ 2304414 - 2304061 - | type 4 fimbrial biogenesis protein PilZ TERM 2969 2304562 - 2304538 - R 75 -9.9 -3.55622 | CTCAATCCTGTGAAA GGCATCGCTCA GCC CGCGCGACGCC GGGGTGGCCGTAACA holB 2305559 - 2304546 - | DNA polymerase III, delta prime subunit CJA_1990 2305673 - 2305563 - | hypothetical protein TERM 2970 2305948 - 2305979 + GH 72 -8.6 -3.66654 | overlap 2305949 2305951 ACACGGTTTGGTTGG GCAGGACGAGGGTG AAGT CACCCTCCCCCTGA TTTGCGATTGGCCTA TERM 2971 2305949 - 2305978 + GH 77 -12.1 -2.79671 | overlap 2305948 2305951 CACGGTTTGGTTGGG CAGGACGAGGGTG AAGT CACCCTCCCCCTG ATTTGCGATTGGCCT CJA_1991 2305658 - 2306296 + | ribosomal large subunit pseudouridine synthase A CJA_1992 2306477 - 2307631 + | putative traF TERM 2972 2307677 - 2307652 - T 100 -9 -5.26918 | opp_overlap 2307652 ACACCCCATAAAAAA CGCACGCTTG TCTTGG CAACCGTGCG TTTTTTATGCTCGAC TERM 2973 2307652 - 2307677 + T 100 -9.7 -5.31275 | opp_overlap 2307652 ACACCCCATAAAAAA CGCACGCTTGT CTTG GCAACCGTGCG TTTTTTATGCTCGAC tmk 2308354 - 2307713 - | thymidylate kinase TERM 2974 2308398 - 2308414 + H 78 -6.5 -4.72272 | overlap 2308392 CTTCACCCTCGGGGA GCGCGTA TCA TACCCGC TTTTTCATCCAGGGA ppiB-1 2308439 - 2308930 + | peptidyl-prolyl cis-trans isomerase B TERM 2975 2308976 - 2308996 + G 100 -11.1 -4.72486 | CACCTGCACTCCTCG CGCCCGC AGATCAC GCGGGCG TTTTTCGACTTTCTC TERM 2976 2309319 - 2309349 + G 76 -12.5 -2.56596 | opp_overlap 2309310 2309327, overlap 2309315 ACTATATGGCATTTC GCCAGCAAGTCCG CAACC CGGACTGGCAGGC TCAATTGCTGGCCCA lpxH 2308934 - 2309656 + | UDP-2,3-diacylglucosamine hydrolase CJA_1996 2310083 - 2309673 - | hypothetical protein miaE 2310758 - 2310150 - | tRNA-(MS[2]IO[6]A)-hydroxylase subfamily TERM 2977 2310390 - 2310375 - G 77 -10.4 -3.57561 | opp_overlap 2310377, overlap 2310355 2310387 CGCTAATTTGGCAAA GCGCTC GCAA GAGCGC GCTTCGATAATCGCG TERM 2978 2310619 - 2310639 + g 86 -3.9 -5.43866 | opp_overlap 2310619, overlap 2310621 TAGCGAAACATCAAT GTCAGCG CGGTCGA CGCTGCC TTTTTTTCACAATTG CJA_1998 2311252 - 2310770 - | hypothetical protein TERM 2979 2311206 - 2311179 - G 77 -12.8 -2.71263 | overlap 2311184 2311186 AAGCGCTTGCAACCA CGACAGACACTG TCGC CAATGCCTGTCG AGCAAATACCAACGC tre37B 2312890 - 2311259 - | trehalase, putative, tre37B TERM 2980 2311665 - 2311649 - G 74 -2.3 -5.05782 | overlap 2311663 AGCCACCCCAAAAAA CAATG GGAACAG CATTG CCAGGGACAACTGTC TERM 2981 2312097 - 2312085 - G 77 -3.3 -5.09895 | overlap 2312072 2312070 TAGCGATTTAAAAAA TCGCC ATT GGCCA GGGTTACCAAATGCT gnl 2313929 - 2312901 - | gluconolactonase precursor TERM 2982 2314145 - 2314130 - H 72 -9 -3.53224 | opp_overlap 2314130 TAGCTCTTCGTTAAA CCCTCT ACCC AGAGGG TTTAACGCGTTGCAA TERM 2983 2314130 - 2314145 + H 72 -9 -3.57561 | opp_overlap 2314130 TAGCTCTTCGTTAAA CCCTCT ACCC AGAGGG TTTAACGCGTTGCAA TERM 2984 2314398 - 2314384 - g 70 -3.5 -4.67353 | overlap 2314386 GGAGCTACTGAAAAA TCCCC CCGCT GGAGA AGCTGAAGTATTACT TERM 2985 2314918 - 2314887 - g 86 -9.4 -4.42386 | gap 1 TGGCCATGTACAAAA TGGCACG-CGAAGGT TTA ACCCCCGACGAGCCA GGCAAAATTGGTCCT TERM 2986 2316005 - 2315981 - g 84 -3.6 -5.24531 | gap 1, opp_overlap 2315981, overlap 2315986 ACTGTCGAGAAAAAA GGCAAGAAGAA CATC TTCT-CTGGCC GTATTCTCGAAGTGG acnB 2314211 - 2316895 + | aconitate hydratase 2 TERM 2987 2316902 - 2316955 + T 100 -17 -3.34895 | gap 1, opp_overlap 2316908 2316909 2316921, overlap 2316904 2316907 2316921 GCCATTTAAATTGCC GTACAACGCCAGTAAAAAAGCCGGA ATAAA TCCGGCTTTTTTACTGGCTCTG-GC TTAATTAACCCTAGG TERM 2988 2316904 - 2316954 + T 100 -18.5 -2.60723 | opp_overlap 2316908 2316909 2316921, overlap 2316902 2316907 2316921 CATTTAAATTGCCGT ACAACGCCAGTAAAAAAGCCGGA ATAAA TCCGGCTTTTTTACTGGCTCTGG CTTAATTAACCCTAG TERM 2989 2316907 - 2316951 + T 100 -18.8 -2.60244 | opp_overlap 2316908 2316909 2316921, overlap 2316904 2316902 2316921 TTAAATTGCCGTACA ACGCCAGTAAAAAAGCCGGA ATAAA TCCGGCTTTTTTACTGGCTC TGGCTTAATTAACCC TERM 2990 2316950 - 2316908 - T 100 -22.3 -3.30635 | opp_overlap 2316907 2316904 2316902 2316921, overlap 2316909 2316921 TAAATTGCCGTACAA CGCCAGTAAAAAAGCCGGA ATAAA TCCGGCTTTTTTACTGGCT CTGGCTTAATTAACC TERM 2991 2316949 - 2316909 - T 100 -25.8 -2.5806 | opp_overlap 2316907 2316904 2316902 2316921, overlap 2316908 2316921 AAATTGCCGTACAAC GCCAGTAAAAAAGCCGGA ATAAA TCCGGCTTTTTTACTGGC TCTGGCTTAATTAAC TERM 2992 2316937 - 2316921 - T 100 -9.4 -5.16237 | opp_overlap 2316907 2316904 2316902 2316921, overlap 2316909 2316908 AACGCCAGTAAAAAA GCCGGA ATAAA TCCGGC TTTTTTACTGGCTCT TERM 2993 2316921 - 2316937 + T 100 -9.4 -5.17353 | opp_overlap 2316921 2316909 2316908, overlap 2316907 2316904 2316902 AACGCCAGTAAAAAA GCCGGA ATAAA TCCGGC TTTTTTACTGGCTCT TERM 2994 2317029 - 2316998 - T 100 -16.1 -3.88985 | opp_overlap 2317004, overlap 2317004 AAAACTGGCTACAAA TAAAAAGGCGGCT GTTAAA AGCCGCCTTTTTA TTGCAATAATAAATA TERM 2995 2317023 - 2317004 - T 100 -10.7 -5.38054 | opp_overlap 2317004, overlap 2316998 GGCTACAAATAAAAA GGCGGCT GTTAAA AGCCGCC TTTTTATTGCAATAA TERM 2996 2317004 - 2317023 + T 100 -10.7 -5.08601 | opp_overlap 2316998 2317004 GGCTACAAATAAAAA GGCGGCT GTTAAA AGCCGCC TTTTTATTGCAATAA CJA_2002 2318915 - 2317050 - | putative peptidyl-prolyl cis-trans isomerase D TERM 2997 2317131 - 2317143 + g 74 -3.3 -4.98436 | overlap 2317132 CATATTACCAACCTG AGCGA CAA TCGCC TTTTTCTGCTCTTCC TERM 2998 2317607 - 2317597 - G 70 -4.6 -4.57837 | ACATCTTCGGAAAAA GCCG CGT CAGC AACCAACTTGTTAGC TERM 2999 2318850 - 2318837 - G 71 -2.3 -4.88228 | ATTCAACACCAAAAA GGGCA AAAA TGACC ACCAGGAATCCAATC TERM 3000 2318874 - 2318885 + g 72 -5.8 -4.3487 | TCCAATCAATATGTA GGAG ATGA CTCC TTTTGAATTATCTCT TERM 3001 2319071 - 2319090 + r 86 -4.9 -5.5112 | opp_overlap 2319072, overlap 2319072 TACAGACTAAAAAAA AGGCGCA CTCAAA TGCGCCC TTTTTTGTTGGTAGA TERM 3002 2319072 - 2319089 + r 74 -8.4 -3.89587 | opp_overlap 2319072, overlap 2319071 ACAGACTAAAAAAAA GGCGCA CTCAAA TGCGCC CTTTTTTGTTGGTAG TERM 3003 2319089 - 2319072 - R 100 -9.1 -5.92337 | opp_overlap 2319072 2319071 ACAGACTAAAAAAAA GGCGCAC TCAA ATGCGCC CTTTTTTGTTGGTAG CJA_2003 2319418 - 2319146 - | DNA-binding protein HU superfamily TERM 3004 2319645 - 2319613 - R 87 -14.3 -2.90061 | opp_overlap 2319611, overlap 2319610 2319620 ATACGCATATAAGCA CTGCAAATTGACCGC AAA ACAGCCAATTTGCAG CATATATCTATCAAT lon 2322080 - 2319663 - | ATP-dependent protease La TERM 3005 2321900 - 2321925 + g 71 -10.5 -2.8474 | overlap 2321897 GATCATCTTGTTGGG GGTTTTTCTGG GCCA CCAGGAGAACC TGCTTGTCACTGGAC TERM 3006 2322190 - 2322175 - R 100 -11.8 -5.1925 | opp_overlap 2322175 TCAGAATGTAAAAAA GGGCGC TATA GCGCCC TTATAATGCAGAGTT TERM 3007 2322175 - 2322190 + r 82 -11.8 -3.40899 | opp_overlap 2322175 TCAGAATGTAAAAAA GGGCGC TATA GCGCCC TTATAATGCAGAGTT clpX 2323520 - 2322219 - | ATP-dependent Clp protease, ATP-binding subunit ClpX clpP 2324289 - 2323645 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 3008 2324218 - 2324198 - G 77 -6.8 -4.55446 | opp_overlap 2324200, overlap 2324201 GAATAAATATCAAAA GAGCGCTC TCCAC GAGCGGTC TGCTCAATCACGATA TERM 3009 2324423 - 2324446 + r 100 -11 -5.0133 | opp_overlap 2324423 2324424, overlap 2324424 ATTTGGCGGGGGAAA GCCGCAAAGC GAGC GCTTTGCGGA TTTTTTAGACAACTA TERM 3010 2324446 - 2324423 - R 82 -11 -3.53091 | opp_overlap 2324423 2324424, overlap 2324424 ATTTGGCGGGGGAAA GCCGCAAAGC GAGC GCTTTGCGGA TTTTTTAGACAACTA TERM 3011 2324424 - 2324445 + r 95 -14.5 -3.60316 | opp_overlap 2324423 2324424, overlap 2324423 TTTGGCGGGGGAAAG CCGCAAAGC GAGC GCTTTGCGG ATTTTTTAGACAACT TERM 3012 2324445 - 2324424 - R 86 -14.5 -2.71712 | opp_overlap 2324424 2324423, overlap 2324423 TTTGGCGGGGGAAAG CCGCAAAGC GAGC GCTTTGCGG ATTTTTTAGACAACT tig 2325772 - 2324459 - | trigger factor CJA_2009 2326609 - 2326073 - | hypothetical protein CJA_2010 2329253 - 2326632 - | putative DNA topoisomerase I TERM 3013 2328741 - 2328763 + g 77 -8.4 -4.10855 | TTGCGCATCGACACG GTTCTGGTCT ATC GGGCCAGGAC TTTTAAAGGCATTTT TERM 3014 2329105 - 2329121 + g 70 -4.3 -4.45068 | overlap 2329106 GCCTGCCTGGCTCGC TCCTTGG TAT CCACGGG TTTGTTATTGCCACT CJA_2011 2329709 - 2329614 - | hypothetical protein TERM 3015 2329950 - 2329932 - gR 70 -10.2 -2.5655 | overlap 2329931 CCTAGCTACACCAAC CGCGCCAG CTA CCAGCGCG ATAGCGATGCCCAAA CJA_2013 2329608 - 2330315 + | hypothetical protein CJA_2012 2330847 - 2330302 - | hypothetical protein TERM 3016 2330411 - 2330427 + g 81 -6.6 -4.66609 | overlap 2330404 GCCGCTTGCTCCTCT GGTGTT TTGGC AACACC TTTTTCCGTCCAGTA CJA_2014 2331001 - 2331456 + | universal stress protein family CJA_2015 2333361 - 2331460 - | ABC transporter, ATP-binding protein TERM 3017 2333262 - 2333277 + g 78 -5.4 -4.74706 | gap 1, opp_overlap 2333262 CATTGCGCCCAATCA GGCACAG GCG CTG-GCC TTTTTCGATGTTGAA TERM 3018 2333326 - 2333337 + g 86 -7.2 -4.88222 | AACTTGCAGGCCGTA GCCC AAAT GGGC TTTTTCAATTTTAAT CJA_2016 2333615 - 2333451 - | hypothetical protein TERM 3019 2334268 - 2334247 - g 86 -6.5 -5.09173 | gap 1, opp_overlap 2334247 2334261, overlap 2334248 2334249 GAACAGTGGAAAAAA GC-CGGGCGT ATG ACGCCGGAGC TGATCTGGAGCCGGC TERM 3020 2335654 - 2335635 - g 79 -2.1 -5.26119 | GGGGCAAAAACAAAA CTTCATC ACCCCG GAAGAAG CCAACACCCAACTTT lmt23A 2333644 - 2335671 + | lytic murein transglycosylase, putative, lmt23A TERM 3021 2335784 - 2335761 - T 85 -12.4 -3.35996 | opp_overlap 2335762, overlap 2335762 TAGTTCTACTCATAA GGCGAGCCTC ATTT GAGGCTCGCT TTTTTTATGATTCGG TERM 3022 2335783 - 2335762 - T 90 -15.9 -2.61383 | opp_overlap 2335762, overlap 2335761 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG TERM 3023 2335762 - 2335783 + T 100 -15.9 -5.71983 | opp_overlap 2335761 2335762 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG CJA_2018 2336906 - 2335755 - | ISCja2, transposase TERM 3024 2337004 - 2337018 + r 88 -5.6 -5.5604 | opp_overlap 2337004 AACTATGGGACAGCA GTGGCG TCA TGCCGC TTTTTTATTGGTTAA CJA_2019 2337413 - 2337048 - | hypothetical protein CJA_2020 2338400 - 2337486 - | peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein CJA_2021 2339419 - 2338442 - | HPP family TERM 3025 2339157 - 2339139 - G 70 -4.5 -4.45083 | CTGACACCGACAAAA GCGGAAA TCAAG TGTCCGC CCAATACTTGCCATG TERM 3026 2339526 - 2339510 - g 71 -3 -4.83243 | gap 1 CTTACACAAAATAAA CAGG-CA GGAT TGACCTG GATCATTGGCCCTGT CJA_2022 2339456 - 2339551 + | hypothetical protein CJA_2023 2339614 - 2339826 + | hypothetical protein TERM 3027 2340049 - 2340032 - gf 73 -4 -4.86001 | opp_overlap 2340032 AGCAGCGTAGAAAAA GCAGGC TACGAT GCCAGC TTACTCACTACAGAC CJA_2024 2339798 - 2342089 + | copper-translocating P-type ATPase hmrR2 2342103 - 2342600 + | MerR-family transcriptional regulator TERM 3028 2343198 - 2343217 + G 91 -10.8 -4.18018 | opp_overlap 2343202 TGCACAGACTTACCA CCAATCCT GGCC AGGATTGG TTTTACATAACGCCA CJA_2026 2343124 - 2344485 + | outer membrane efflux protein TERM 3029 2344672 - 2344682 + G 72 -4.6 -4.72272 | TCACCATAATATTGA GGGG AAA TCCC TTTTTAATCAGGAAA CJA_2027 2344478 - 2345884 + | multicopper oxidase CJA_2028 2346091 - 2345963 - | hypothetical protein TERM 3030 2346021 - 2346009 - G 82 -2.7 -5.28176 | TTGAGCCATAAAAAA TTTCC GGG AGAAA TTTTCAACGCCGCGT CJA_2029 2347609 - 2346119 - | possible msrA, pms peptide methionine sulfoxide reductase TERM 3031 2347303 - 2347263 - GH 79 -7.6 -4.43351 | ACACCCCAAAAACAA CCTGCC-CCGACAACGATGG TGT CCAG-GTTGCGGGTGGCAGG CATATCCTTGGGCTC narB 2347602 - 2347850 + | assimilatory nitrate reductase TERM 3032 2348713 - 2348701 - g 72 -6.9 -4.24123 | GCAACAAGGTGAAAA GGGCA ACC CGCCC TATGCCGGCGCCATC TERM 3033 2349114 - 2349128 + G 71 -9.2 -3.55622 | opp_overlap 2349102 2349100 2349099, overlap 2349102 TCAGTGATACCTTAT CGCTGG TTG CCGGCG TTTCCCACGATTGGC prrA 2347907 - 2349940 + | TonB-dependent outer membrane receptor TERM 3034 2350012 - 2349979 - g 77 -12.4 -2.82516 | opp_overlap 2349989 TCGTCGATTATTACA CTGCGCAGCACTGG TGATTG CCAGTGTTGCGCTG CCGGTACAAGCGGAA TERM 3035 2350451 - 2350471 + G 73 -9 -3.60948 | opp_overlap 2350448, overlap 2350462 GGACATATATTACTG CCCAATCC GGCCA GGGTTGGG TTTGCCCCTGTGTTA TERM 3036 2350560 - 2350545 - g 73 -9 -3.6502 | opp_overlap 2350545 2350544 CACTGTGGAGTGAAA TCAGCG GCAA CGCTGA ATTGTTGGAACAAGG TERM 3037 2350750 - 2350771 + G 77 -8.7 -4.0162 | opp_overlap 2350748 TACAGATAAAGTAGC GGCAGCAAA AACC TTTGCCGCC TTTGTGCTATCGGAA CJA_2032 2349950 - 2351233 + | putative regulatory lipoprotein CJA_2033 2351230 - 2352588 + | Predicted thiol oxidoreductase CJA_2034 2352635 - 2352796 + | hypothetical protein CJA_2035 2354217 - 2352802 - | putative lipoprotein TERM 3038 2353275 - 2353303 + g 83 -12.5 -3.41745 | opp_overlap 2353252 2353268, overlap 2353252 ACACCAATTGCCAGG GCTGCTTTTCCGT ACG ACGGGAAAACAGC TTGATATTATCGCCA TERM 3039 2354068 - 2354048 - G 77 -9.8 -3.56821 | opp_overlap 2354044 2354042 ACCAGATCCTGTAAA TCGCTACT GCGGG AGTAGCGA TAAATATCTTCGGTT CJA_2036 2356961 - 2354217 - | hypothetical protein CJA_2037 2357663 - 2357001 - | hypothetical protein TERM 3040 2357638 - 2357605 - G 73 -3.7 -4.8083 | overlap 2357607 TAATACCAGGAAAAA CCTTGCCAGGCGGCA ACAG CGCCCACTACCAAGG CAATGACAAATAACA pabB 2357811 - 2359226 + | para-aminobenzoate synthase, component I TERM 3041 2359725 - 2359735 + G 70 -6.8 -4.07877 | ATGCACCCGTCTGTG CTGG CAA CCAG TTGTTTCTACGCTAC CJA_2039 2359290 - 2360042 + | carboxymethylenebutenolidase TERM 3042 2360093 - 2360067 - T 100 -13.8 -5.29445 | opp_overlap 2360067 CGCCAATAATAAAAA GCCCGCCATA GTATTTT TATGGCGGGC TTTTTTGTCAGTGGA TERM 3043 2360067 - 2360093 + T 100 -14.5 -5.28176 | opp_overlap 2360067 CGCCAATAATAAAAA GCCCGCCATAG TATTT TTATGGCGGGC TTTTTTGTCAGTGGA pel10B 2362060 - 2360120 - | pectate lyase, putative, pel10B TERM 3044 2361058 - 2361045 - G 83 -5.9 -4.94992 | TCAAATTTATAAAAA CCGCC ATGG GGCAG CTGCCAGCTAATCAT TERM 3045 2361727 - 2361714 - G 84 -3.7 -5.31519 | ACACGGAAATAAAAA GCCTG GTTA CTGGC ACTCAGGGACTTATA CJA_2041 2362868 - 2362251 - | phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein TERM 3046 2362974 - 2362949 - H 79 -9.7 -3.81951 | opp_overlap 2362954 2362966 2362971, overlap 2362950 2362954 TTTTACACCACTAAA GCAAACCCGCC CAGA AGCGGGTTTGG GCCGTACAGGCCCAG TERM 3047 2362973 - 2362950 - H 82 -13.2 -2.88849 | opp_overlap 2362954 2362966 2362971, overlap 2362949 2362954 TTTACACCACTAAAG CAAACCCGCC CAGA AGCGGGTTTG GGCCGTACAGGCCCA TERM 3048 2362969 - 2362954 - H 76 -8.2 -4.11623 | opp_overlap 2362954 2362966, overlap 2362950 2362949 CACCACTAAAGCAAA CCCGCC CAGA AGCGGG TTTGGGCCGTACAGG cysH 2363078 - 2363803 + | 3'-phosphoadenylylsulfate reductase CJA_2043 2364448 - 2363816 - | protein-methionine-S-oxide reductase TERM 3049 2364512 - 2364483 - R 74 -10.7 -3.25223 | opp_overlap 2364489, overlap 2364489 CATCCACACTACCAA CAAAAACGGCGCC CTCA GGCACCGTTTCAG GTTAGAACCAGCGAT TERM 3050 2364489 - 2364506 + r 72 -8.3 -3.66178 | opp_overlap 2364483 2364489 CACTACCAACAAAAA CGGCGCC CTCA GGCACCG TTTCAGGTTAGAACC TERM 3051 2364506 - 2364489 - R 100 -10.5 -5.15167 | opp_overlap 2364489, overlap 2364483 CACTACCAACAAAAA CGGCGCC CTCA GGCACCG TTTCAGGTTAGAACC CJA_2044 2365608 - 2364514 - | possible protease SohB TERM 3052 2365482 - 2365497 + g 85 -3.2 -5.4505 | GCTTAATGACTTCAA TCTGCC CTTT GTCAGA TTTTTTATTGCGCCC TERM 3053 2365568 - 2365548 - G 86 -6.8 -5.01535 | opp_overlap 2365548, overlap 2365542 TGATAATGACAAAAA CGGCAACC ACAAA GGTCACCG TTTTAGCGAGGAACA CJA_2045 2366296 - 2365643 - | hypothetical protein TERM 3054 2366057 - 2366067 + g 76 -4 -5.02074 | opp_overlap 2366057, overlap 2366049 GCGCACATCAAAGTA TTGA TTT TCAA TTTTTTCGAAACTGA CJA_2046 2367227 - 2366346 - | hydrolase, NUDIX family TERM 3055 2366796 - 2366767 - G 70 -4.9 -4.57837 | gap 1 ATACGCGGGTAAAAA CGCAGCTGGCATGC CAG GCATACACGC-GCG CTATCCACTTGATCG TERM 3056 2367152 - 2367180 + g 82 -8.1 -4.56597 | opp_overlap 2367136 2367151 2367154, overlap 2367153 2367154 CACTTACCACAAAAT AATTCCGGGCAAG TGA TTTGCCCGGAAGG TTTTTGGAAAGGGAA TERM 3057 2367153 - 2367179 + g 80 -11.6 -3.33744 | opp_overlap 2367136 2367151 2367154, overlap 2367152 2367154 ACTTACCACAAAATA ATTCCGGGCAAG TGA TTTGCCCGGAAG GTTTTTGGAAAGGGA TERM 3058 2367178 - 2367154 - G 100 -14.4 -4.35042 | opp_overlap 2367153 2367152 2367154, overlap 2367136 2367151 CTTACCACAAAATAA TTCCGGGCAA GTGAT TTGCCCGGAA GGTTTTTGGAAAGGG TERM 3059 2367154 - 2367178 + g 90 -15.1 -2.60032 | opp_overlap 2367136 2367154 2367151, overlap 2367153 2367152 CTTACCACAAAATAA TTCCGGGCAAG TGA TTTGCCCGGAA GGTTTTTGGAAAGGG CJA_2047 2368963 - 2367257 - | PA1822-like protein TERM 3060 2367300 - 2367320 + g 79 -4.8 -4.89393 | gap 1 CTCTCCTCGGCGATT TGCA-ACAC ACTG GTGTCTGCA TTTTTATCCAATTTA dnaQ 2369913 - 2369200 - | DNA polymerase III, epsilon subunit rnhA 2370422 - 2369988 - | RNase H CJA_2050 2371302 - 2370397 - | Generic methyl-transferase TERM 3061 2370617 - 2370601 - G 82 -7.9 -4.58424 | CACTATCATATAAAA GCCTCCC CAG GGCAGGC GCCACCTTTTACCCC CJA_2051 2371485 - 2371390 - | hypothetical protein CJA_2052 2371608 - 2372243 + | hydroxyacylglutathione hydrolase TERM 3062 2372923 - 2372885 - g 76 -9.5 -3.73072 | opp_overlap 2372884 AACTCCCCCAGTAAA GCCGCCGGTATATGGCA ATTCA TGCCCCATACCGGACGC AGTTTTGGACTGCAG TERM 3063 2373660 - 2373650 - g 72 -5.4 -4.46215 | CAGATTGAAAAAGAA TTGG CAG CCAA GCAATCGCAAGCCGT lmt23B 2372453 - 2374012 + | lytic murein transglycosylase, putative, lmt23B TERM 3064 2374067 - 2374027 - T 100 -22.9 -3.885 | opp_overlap 2374039, overlap 2374028 2374039 ATTTTCACATAATAA CCCCATAAAAAAGCCCTCA GTA TGAGGGCTTTTTTATGGGT GAAAATATAGCGCCT TERM 3065 2374066 - 2374028 - T 100 -26.4 -2.92618 | opp_overlap 2374039, overlap 2374027 2374039 TTTTCACATAATAAC CCCATAAAAAAGCCCTCA GTA TGAGGGCTTTTTTATGGG TGAAAATATAGCGCC TERM 3066 2374039 - 2374055 + T 100 -12.3 -5.28176 | opp_overlap 2374039 2374028 2374027 TAACCCCATAAAAAA GCCCTCA GTA TGAGGGC TTTTTTATGGGTGAA TERM 3067 2374055 - 2374039 - T 100 -12.3 -5.27923 | opp_overlap 2374039, overlap 2374028 2374027 TAACCCCATAAAAAA GCCCTCA GTA TGAGGGC TTTTTTATGGGTGAA CJA_2054 2375695 - 2374082 - | peptide ABC transporter, ATP-binding protein TERM 3068 2374838 - 2374813 - G 100 -2.5 -5.75342 | gap 1 CCCGCCGAAAAAAAA CACC-GGTATGC TGG GTAAACCAGGTG TTAAGGTGTTTAACC oppC 2376581 - 2375700 - | oligopeptide ABC transporter, permease protein TERM 3069 2375917 - 2375901 - G 76 -3.7 -4.89729 | overlap 2375902 CAGAAAACTCAAAAA CGACTCT AAT AGAATCA CGCTGGGGATTGTCA TERM 3070 2376132 - 2376114 - G 77 -6 -4.60041 | overlap 2376116 ACCGATTGCTAAAAA CAGCAACA GCA TACTGCTG CCAAAAATGACTGTG TERM 3071 2376133 - 2376116 - G 72 -7.7 -3.91506 | overlap 2376114 CGATTGCTAAAAACA GCAACAG CATA CTGCTGC CAAAAATGACTGTGA oppB 2377516 - 2376581 - | oligopeptide transport system permease protein oppB CJA_2057 2378265 - 2377528 - | oligopeptide ABC transporter periplasmic oligopeptide-binding protein TERM 3072 2377747 - 2377766 + gr 83 -6.4 -4.89477 | opp_overlap 2377747 AATCAATTCATCATA CCGGGT ATTACCCC ACCCGG TTTTATTATTACCAG TERM 3073 2377859 - 2377874 + gr 74 -6.8 -4.28548 | opp_overlap 2377852 2377851, overlap 2377860 CGCGAAACCTGGTAA TCCAGC ATCT GCTGGG TTTTGATAAATACCT TERM 3074 2378063 - 2378075 + gr 71 -3.3 -4.8622 | overlap 2378064 TTGCGCGCCAGCTCC AGGTC ATA GACCA TTTTTGCTTCGGCGG CJA_2058 2379134 - 2378235 - | oligopeptide ABC transporter periplasmic oligopeptide-binding protein CJA_2059 2381305 - 2379215 - | Peptidase family M3 TERM 3075 2381757 - 2381727 - g 78 -8.2 -4.15222 | opp_overlap 2381727 2381742 ACTGTCTGCAAGAAA TCACCAATGTGGCC ATG GGCCAGGCCGGTGA TCGTCTGGCACGCTT CJA_2060 2381678 - 2382295 + | hypothetical protein TERM 3076 2382755 - 2382745 - g 75 -5.4 -4.63218 | CTGCTGTCAATAAAA TTGC CCA GCAA CACGCCAATAAGCAG CJA_2061 2382309 - 2383277 + | sensory box/GGDEF family protein TERM 3077 2383319 - 2383301 - T 100 -8.8 -5.29846 | opp_overlap 2383301 AATGCCAAACAAAAA GCCCGC TGACAAG GCGGGC TTTGGGGTGGGAGAT TERM 3078 2383301 - 2383319 + T 75 -9.5 -3.60098 | opp_overlap 2383301 AATGCCAAACAAAAA GCCCGCT GACAA GGCGGGC TTTGGGGTGGGAGAT CJA_2062 2383501 - 2383367 - | hypothetical protein uvs015 2384122 - 2383574 - | Uvs015 ccmF 2386133 - 2384115 - | cytochrome c-type biogenesis protein CcmF TERM 3079 2384370 - 2384387 + g 74 -2.6 -5.05228 | overlap 2384371 TGTCATAACACTGTT GGTCGC CAGGTA GCGACG TTTTTGTGGTTTCAT TERM 3080 2384913 - 2384900 - G 78 -9.5 -3.86658 | TCAGAAAACAGAGAA CCCCC ATGA GGGGG ATAAAGAAGAGGTTG TERM 3081 2385987 - 2385966 - G 93 -3.5 -5.59879 | overlap 2385967 CACAAACACAAAAAA TGCCGACGC AAAT GCGCGGGCC GAATGCATAAGGATG CJA_2065 2386587 - 2386123 - | CycJ ccmD 2386847 - 2386653 - | heme exporter protein CcmD CJA_2067 2387615 - 2386851 - | heme exporter protein C ccmB 2388388 - 2387687 - | heme exporter protein CcmB ccmA 2389053 - 2388388 - | heme ABC exporter, ATP-binding protein CcmA TERM 3082 2390926 - 2390910 - g 71 -2.1 -5.02074 | overlap 2390912 CCACCCTGGAAAAAA CACGGGC AAG GCTCGCA CAATTGCAAACACAA TERM 3083 2390988 - 2390970 - g 70 -5.2 -4.3129 | overlap 2390971 GATTGATGATCAAAA GCCTGCAA TGC CTGCAGGG CTTGCCACCACAACC CJA_2070 2389073 - 2391046 + | hypothetical protein TERM 3084 2391066 - 2391052 - f 75 -6.4 -4.46581 | TAAAACCTGAGAAAA GTCCTC CAT GAAGAC ATCACAACAGGCTAA TERM 3085 2391211 - 2391225 + G 70 -6.4 -4.2461 | opp_overlap 2391211 TCCTTTGTGTGACAA TCCATC GCT GGTGGA TTTATTGGTCAACCT TERM 3086 2391345 - 2391326 - g 80 -11.4 -3.34468 | overlap 2391324 CTGGAAGGAAAGACA GCGGAGGA TATC CCCTCCGC AAAACCCGCACTTTA CJA_2071 2391059 - 2391361 + | FlhB domain protein CJA_2072 2393917 - 2391383 - | sensory box protein TERM 3087 2392274 - 2392292 + g 71 -3.2 -4.84359 | opp_overlap 2392274 ATCGGCATAACGCAA CAATTC ATGTACC GAATTG TTTTTATCCGGATAA TERM 3088 2392800 - 2392790 - G 70 -6.8 -4.13767 | opp_overlap 2392790 TTTTTCATCGTAAAA TGCC AGT GGCA TGATGTGTGTTTGCA ald 2395084 - 2393975 - | alanine dehydrogenase CJA_2074 2395381 - 2395893 + | hypothetical protein CJA_2075 2396824 - 2395916 - | hypothetical protein TERM 3089 2396005 - 2396022 + g 75 -6.9 -4.42386 | AGGCATCCGACGCAT CCTCCAC GGCG GTGGCGG TTTTATCGATGGCCA CJA_2076 2396912 - 2397109 + | hypothetical protein CJA_2077 2397233 - 2398024 + | hypothetical protein TERM 3090 2398131 - 2398152 + F 73 -10.1 -3.33696 | overlap 2398132 TAGCGTTTGTATTCT CCGCCATGC CATA GCATGGCGA TTGCTTCACCCAAGG TERM 3091 2398132 - 2398151 + F 83 -13.6 -2.60075 | overlap 2398131 AGCGTTTGTATTCTC CGCCATGC CATA GCATGGCG ATTGCTTCACCCAAG TERM 3092 2398448 - 2398431 - g 75 -5.5 -4.59773 | opp_overlap 2398443 GGGGATTGTCAAAAA TCGCTGT AAAA ACGGCGA CCACTACTGGGTCGA aer-2 2398177 - 2399751 + | aerotaxis receptor Aer-2 TERM 3093 2399925 - 2399974 + G 100 -18.7 -4.07868 | gap 1, opp_overlap 2399937 CTGGCATCCCTACAC CTCCTTTACCAACCCACCACCGGT AAC ACCGGTGATGGGT-GGCGAAGGGG TTTATCTGCATCTCG TERM 3094 2399963 - 2399937 - g 100 -18.8 -3.14344 | opp_overlap 2399925 CACCTCCTTTACCAA CCCACCACCGGT AAC ACCGGTGATGGG TGGCGAAGGGGTTTA TERM 3095 2400175 - 2400189 + G 76 -3.5 -4.99035 | CGTATCACACCCGAG GGCCT GAATA AGGTC TTTTTCTCTGACTCA bioA 2399827 - 2401155 + | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 3096 2401209 - 2401156 - T 76 -12 -2.53759 | gap 2, opp_overlap 2401174, overlap 2401174 AATATGGCGAAGTGA TGTGCCG-C-CGAATAAAAATGGGCC TGAT GGCCCATTTTTATTCGAGTCGAGTCA AGGGCACGGTCAACG TERM 3097 2401174 - 2401189 + T 100 -10.4 -5.08601 | opp_overlap 2401174 2401156 GCCGCCGAATAAAAA TGGGCC TGAT GGCCCA TTTTTATTCGAGTCG TERM 3098 2401189 - 2401174 - T 100 -10.4 -5.06414 | opp_overlap 2401174, overlap 2401156 GCCGCCGAATAAAAA TGGGCC TGAT GGCCCA TTTTTATTCGAGTCG trpS 2402226 - 2401219 - | tryptophanyl-tRNA synthetase TERM 3099 2401818 - 2401794 - G 86 -9.3 -4.43681 | CATTGAACATCAAAA TATCCGCTGCC ATC AGCACCGGATA AGAATAGAGTCCCAT CJA_2081 2403348 - 2402317 - | cyclic nucleotide-binding domain protein TERM 3100 2402942 - 2402918 - G 75 -7.2 -4.42464 | gap 1, overlap 2402921 AACTTGGTAAACAAA GGA-GCCTGCA ACAA TGCAGACATCC AGTCGTTATCATCAT TERM 3101 2403488 - 2403458 - R 76 -12.1 -2.71263 | gap 1, opp_overlap 2403461, overlap 2403461 AACTGCCGGGAATTA TAATCAGGGCACTC TTAC GA-TGCCCTGATTA GCTCACAGGATTTTG TERM 3102 2403485 - 2403461 - R 72 -9.4 -3.50853 | gap 1, opp_overlap 2403461, overlap 2403458 TGCCGGGAATTATAA TCAGGGCACTC TTAC GA-TGCCCTGA TTAGCTCACAGGATT CJA_2082 2404881 - 2403544 - | aminopeptidase, M18 family TERM 3103 2404698 - 2404675 - G 70 -6.1 -4.15632 | overlap 2404694 ACGACCATAGACAAA CGCAATAAT GGACGA ATCATTGCG TGTCACCCAATAGCG CJA_2083 2405702 - 2404938 - | glycoprotease family protein TERM 3104 2405733 - 2405716 - R 88 -7.7 -5.08255 | opp_overlap 2405716, overlap 2405718 ATCCGGAAAATAAAA TAGGCTC CGTA GAGCCCA TTTTCAGTACATCAA TERM 3105 2405731 - 2405718 - R 76 -8.1 -4.16397 | opp_overlap 2405716, overlap 2405716 CCGGAAAATAAAATA GGCTC CGTA GAGCC CATTTTCAGTACATC adk 2406412 - 2405759 - | adenylate kinase CJA_2085 2406764 - 2407234 + | transcriptional regulator, AsnC family TERM 3106 2407326 - 2407311 - T 100 -11.8 -4.60797 | opp_overlap 2407311 GCCCCATACACAAAA GGCGCC CGCA GGCGCC TTTGTTGTCAGATTA TERM 3107 2407311 - 2407326 + T 95 -11.8 -4.33248 | opp_overlap 2407311 GCCCCATACACAAAA GGCGCC CGCA GGCGCC TTTGTTGTCAGATTA CJA_2086 2408993 - 2407356 - | methyl-accepting chemotaxis protein TERM 3108 2407472 - 2407482 + g 74 -3.2 -4.94992 | TCGCCAGATCATTAA TCTG GAC CAGG TTTTTATCAATTTCC TERM 3109 2408291 - 2408307 + g 83 -12.3 -3.36327 | GAATGGTTAGGTCGC CATCGCC CTC GGCGATG TTCTGGATACGATCG gabD 2410525 - 2409059 - | succinate-semialdehyde dehydrogenase CJA_2088 2412262 - 2410529 - | Cell volume regulation protein A homolog TERM 3110 2411287 - 2411265 - G 100 -10.6 -4.80736 | CAGGAAATAAACAAA CGCTCTTTCA AAT TGAACGAGCG GAAAGGCGCAAGACC TERM 3111 2411931 - 2411921 - G 70 -6.8 -4.08317 | CAAGCTCAAATCAAA CAGC CAT GCTG CCGCGATACCCGTGA TERM 3112 2412184 - 2412154 - G 95 -9.1 -4.8543 | gap 1, overlap 2412155 2412157 CAACGCCCAGAAAAA TC-ACCAGGATAGG CACA CCCACCCTGGTAGA CAGCGAACTGAAAAG TERM 3113 2412182 - 2412155 - G 78 -10.6 -3.50535 | overlap 2412154 2412157 AACGCCCAGAAAAAT CACCAGGATAGG CACA CCCACCCTGGTA GACAGCGAACTGAAA TERM 3114 2412180 - 2412157 - G 76 -11 -3.31915 | overlap 2412155 2412154 CGCCCAGAAAAATCA CCAGGATAGG CACA CCCACCCTGG TAGACAGCGAACTGA rnb 2412444 - 2414438 + | exoribonuclease II CJA_2090 2414463 - 2414927 + | Family of unknown function (DUF589) superfamily CJA_2091 2415582 - 2414995 - | hypothetical protein TERM 3115 2415562 - 2415541 - G 100 -3.9 -5.71638 | opp_overlap 2415555, overlap 2415543 2415555 TAATAAGCAAAAAAA TATTAAAAT TAAA ATTTTAACA AAATTAGTTTTATTG TERM 3116 2415560 - 2415543 - G 70 -4.3 -4.46828 | opp_overlap 2415555, overlap 2415541 2415555 ATAAGCAAAAAAATA TTAAAAT TAAA ATTTTAA CAAAATTAGTTTTAT CJA_2092 2416816 - 2415572 - | hypothetical protein TERM 3117 2415635 - 2415646 + g 70 -5.8 -4.21908 | TGCTTCATATGCATA GCTG TGTT CAGC TTTTGGATACTGATA TERM 3118 2416710 - 2416698 - G 72 -6.2 -4.36914 | TCTGCTTGCATAAAA CGCG ACAGG CGCG AATCAAATATCCGCC CJA_2093 2419405 - 2417351 - | Rhs family protein TERM 3119 2419370 - 2419384 + g 82 -3.4 -5.1971 | overlap 2419371 AATAGGTAAAAGTGC ACCGGC AAG GCTGGA TTTTTGATTTTTCGT CJA_2094 2419478 - 2419792 + | IS66 family element, Orf1 protein TERM 3120 2419820 - 2419838 + G 72 -6.7 -4.28548 | ATGTACCGGTCTATG TCCATCG TCTGC CGGTGGA TTTTCGTAAATCGAT CJA_2095 2419789 - 2420139 + | IS66 family element, Orf2 protein TERM 3121 2421230 - 2421217 - gT 79 -2.3 -5.28176 | overlap 2421225 TCGAGGCACAAAAAA TCCAG AAGG CGGGA AAAACCGGCAAAGCA CJA_2096 2422640 - 2421591 - | RHS Repeat family CJA_2097 2420172 - 2421737 + | IS66 family element, transposase CJA_2098 2424159 - 2422576 - | IS66 family element, transposase TERM 3122 2422613 - 2422631 + g 72 -10.3 -3.36968 | opp_overlap 2422612 2422613 TTCCACGGTAATAAT GCCTCGA TCTGT TCGAGGC TTGTCGCATTGGGTA TERM 3123 2423148 - 2423158 + gr 95 -6.8 -5.40474 | opp_overlap 2423148 2423147 CCCAACAGGCTAAAT GGGT AAT ACCC TTTTTTTCACAAGGT CJA_2099 2424548 - 2424198 - | IS66 family element, Orf2 protein TERM 3124 2424517 - 2424499 - G 77 -8.8 -4.09864 | overlap 2424485 ATGGATTTGCGAAAA TCCACCGG TTG CCGGTGTA CGTATACCGGCACAT CJA_2100 2424859 - 2424545 - | IS66 family element, Orf1 protein CJA_2101 2428335 - 2424928 - | putative cytoplasmic membrane protein CJA_2102 2430604 - 2428997 - | Predicted deacylase TERM 3125 2429034 - 2429044 + g 72 -8.2 -3.71487 | TGAGCCTTGCTTACA CCGG TTT CCGG TTCTTGCATATCATC guaA 2432254 - 2430677 - | GMP synthase, C- domain protein TERM 3126 2430985 - 2431000 + g 81 -4.8 -5.15969 | overlap 2430982 CATCAGCTTCGCGCA GAATAT CGGC ATATTC TTTTTTCACTTCGCC TERM 3127 2431318 - 2431333 + g 82 -3.2 -5.252 | opp_overlap 2431306 CATCGATAAAGGTAC CGCCAA TGAT TTTGCG TTTTTTCTCCGGGTC TERM 3128 2432296 - 2432325 + r 93 -15.9 -3.02043 | opp_overlap 2432296 2432297 2432303, overlap 2432303 GTTTCGCGGCTTAAA TGAAAAACTCGGG CAAG CCCGAGTTTTTCG TGTTGCGGAGCAGTT TERM 3129 2432325 - 2432296 - R 93 -13.7 -3.53012 | opp_overlap 2432296 2432303, overlap 2432297 2432303 GTTTCGCGGCTTAAA TGAAAAACTCGGG CAAG CCCGAGTTTTTCG TGTTGCGGAGCAGTT TERM 3130 2432324 - 2432297 - R 100 -17.2 -2.71712 | opp_overlap 2432296 2432303, overlap 2432296 2432303 TTTCGCGGCTTAAAT GAAAAACTCGGG CAAG CCCGAGTTTTTC GTGTTGCGGAGCAGT TERM 3131 2432318 - 2432303 - R 100 -10.4 -4.98531 | opp_overlap 2432296 2432303, overlap 2432297 2432296 GGCTTAAATGAAAAA CTCGGG CAAG CCCGAG TTTTTCGTGTTGCGG TERM 3132 2432303 - 2432318 + r 100 -10.4 -4.87626 | opp_overlap 2432303 2432297 2432296, overlap 2432296 GGCTTAAATGAAAAA CTCGGG CAAG CCCGAG TTTTTCGTGTTGCGG guaB 2433821 - 2432346 - | inosine-5'-monophosphate dehydrogenase TERM 3133 2434498 - 2434468 - g 82 -3.1 -5.24129 | overlap 2434471 2434472 CCCGCCTATAAAAAA CCACTACCCGGCC TGCCC GGGCGCATAGGGG TTATCACATCCCCTA TERM 3134 2435008 - 2434958 - g 81 -12.6 -3.19463 | GGCAGCAGCGATTAA CCTGGCTGCGCCAGCGCCTC-CGC CACCC GCGCGAGCGGCTGGAGCAGC-AGG GCCAGCGGCTCGACA xseA 2434027 - 2435409 + | exodeoxyribonuclease VII, large subunit TERM 3135 2435430 - 2435451 + F 74 -10.8 -3.14344 | opp_overlap 2435428 GGTGACCAGTATATT GGCGCCCT CTTGTC GGGGCGCC TTGGTAGCACAGCTA TERM 3136 2435972 - 2435986 + G 70 -5.6 -4.33417 | overlap 2435974 GAGCTGGATCAGTTC GAGCAG GAA CTGCGC TTTGTTATCCCTGAG thiO 2435537 - 2436727 + | glycine oxidase ThiO thiS 2436740 - 2436943 + | thiamine biosynthesis protein ThiS TERM 3137 2437729 - 2437680 - g 81 -9.9 -3.91897 | overlap 2437681 GGCCTGATGCAGAAA CGCCAGACAGCCAGCCCCAGCAC ACCT ACACTGGGACAGCCTTTCTGGCA TAACCAGTAACCCTG TERM 3138 2437728 - 2437681 - g 71 -11.2 -2.94924 | overlap 2437680 GCCTGATGCAGAAAC GCCAGACAGCCAGCCCCAGCAC ACCT ACACTGGGACAGCCTTTCTGGC ATAACCAGTAACCCT thiG 2436945 - 2437739 + | Thiazole biosynthesis protein ThiG TERM 3139 2437779 - 2437740 - T 100 -16.6 -3.30474 | opp_overlap 2437751, overlap 2437751 TGGCATAACCAGTAA CCCTGAAAAAACGCTGCC AACC GGCAGCGTTTTTTCATCG ATCGACAGATTGCTC TERM 3140 2437768 - 2437751 - T 100 -12.7 -5.055 | opp_overlap 2437751, overlap 2437740 GTAACCCTGAAAAAA CGCTGCC AACC GGCAGCG TTTTTTCATCGATCG TERM 3141 2437751 - 2437768 + T 100 -12.7 -5.1675 | opp_overlap 2437751 2437740 GTAACCCTGAAAAAA CGCTGCC AACC GGCAGCG TTTTTTCATCGATCG CJA_2109 2438499 - 2437774 - | hypothetical protein TERM 3142 2438193 - 2438180 - G 76 -3.8 -5.01732 | AACTGCTGCAAAAAA TCGG TGACCG CCGA GCCGGATACTACACT CJA_2110 2439159 - 2438530 - | putative HD-GYP hydrolase domain containing protein CJA_2111 2440095 - 2439199 - | Auxin Efflux Carrier superfamily TERM 3143 2440232 - 2440202 - R 100 -20.6 -4.43879 | ATGACCTAATTAAAA CGCCCATACCTCTG GAG CAAAGGTATGGGCG CAATCGACAACAGCC CJA_2112 2441592 - 2440279 - | ammonium transporter TERM 3144 2440859 - 2440818 - G 81 -13 -2.73735 | AAATATGCGTAACCA GCAGCGCCATAGCGGC ATTTTCATTG GCCGCCAGGGCACTGC CAGCGTTAAACCCAA TERM 3145 2441683 - 2441657 - R 70 -5.3 -4.46212 | gap 1 GCCCGTACTAGAAAA TCCCACTAATAG CGCA CCATTA-TGGGA AAGATATCCGGATCA himD 2442406 - 2442041 - | himD/ihfB TERM 3146 2442481 - 2442451 - R 100 -14.8 -4.66953 | overlap 2442454 TGAACAGCTTAAAAA CAACAGTGGCCAGA TTA TCTGGCCACTGTCC GTCAAAGATTACTCT TERM 3147 2442478 - 2442454 - R 100 -18.7 -4.43351 | overlap 2442451 ACAGCTTAAAAACAA CAGTGGCCAGA TTA TCTGGCCACTG TCCGTCAAAGATTAC TERM 3148 2442484 - 2442499 + r 72 -6.2 -4.35524 | CTGGCCACTGTCCGT CAAAGA TTAC TCTTTG TTTTGCATTTGAGCC rpsA 2444166 - 2442490 - | ribosomal protein S1 CJA_2115 2445810 - 2444398 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 3149 2444476 - 2444486 + g 75 -5.4 -4.59853 | TTGCACTTCGACGAT TTCC AGG GGAA TTTTTCCGGGGTTAC TERM 3150 2445740 - 2445716 - G 70 -10.8 -2.72227 | overlap 2445721 AACATCGTGTAATTA CCAAACAGCT TTAAC AGCTGCTTGG GATAATGCTGACGCG galU 2446736 - 2445849 - | UTP-glucose-1-phosphate uridylyltransferase TERM 3151 2445906 - 2445923 + g 77 -9.9 -3.63627 | overlap 2445898 ATCGGGATGGCGAGC GCCATAG GTTA CTATGGC TTTCAGGTATCCCAG TERM 3152 2446034 - 2446054 + g 74 -8.1 -4.09864 | CGGTCAGCTGAATTT CCCCGCCTG CGC CCGGCAGGG TTTTGGCCAATAAAT CJA_2117 2448146 - 2446797 - | putative phosphomannomutase TERM 3153 2448062 - 2448049 - G 95 -9.5 -5.02074 | CGAGGCTGTAAAAAA CGCGC ATAA GCGCG TCCGATCCGATAGGC cmk 2449014 - 2448349 - | cytidylate kinase CJA_2119 2449781 - 2449059 - | Orotidine 5'-phosphate decarboxylase TERM 3154 2449815 - 2449795 - R 100 -15.4 -5.61596 | opp_overlap 2449795 ACCTGGATAAAAAAA GGCCCGGG GGTTA CCCGGGCC TTCTATTAAAGCAAA TERM 3155 2449795 - 2449815 + r 100 -15.4 -3.65812 | opp_overlap 2449795 ACCTGGATAAAAAAA GGCCCGGG GGTTA CCCGGGCC TTCTATTAAAGCAAA TERM 3156 2449843 - 2449833 - R 85 -6.8 -5.01811 | overlap 2449826 CTATTAAAGCAAAAA TCGC TTG GCGA CGCATCTATCTTTAT comEA 2450171 - 2449863 - | integral membrane protein TERM 3157 2450360 - 2450332 - R 100 -18.3 -3.43492 | opp_overlap 2450338, overlap 2450338 TTATATTCAGTACAA CAAAAAGCCCCGC ATT ACGGGGCTTTTTG GCAAAAACAACTTAA TERM 3158 2450354 - 2450338 - R 100 -11.5 -5.22006 | opp_overlap 2450338, overlap 2450332 TCAGTACAACAAAAA GCCCCGC ATT ACGGGGC TTTTTGGCAAAAACA TERM 3159 2450338 - 2450354 + r 93 -10.8 -4.56597 | opp_overlap 2450338 2450332 TCAGTACAACAAAAA GCCCCG CATTA CGGGGC TTTTTGGCAAAAACA cysNC 2451795 - 2450377 - | sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase TERM 3160 2451632 - 2451647 + g 77 -6.2 -4.68593 | overlap 2451611 2451618 CGAACAGCTTCGAGC TGATCT TCGT AGATCA TTTTTGAATCGTGCA cysD 2452749 - 2451841 - | sulfate adenylyltransferase subunit 2 TERM 3161 2452006 - 2452022 + g 82 -3 -5.17353 | gap 1, overlap 2452006 2452007 TGGATAACATCCCAA T-GTGCG GAAG CGCACCA TTTTTTCCTCGATCT TERM 3162 2452787 - 2452770 - R 71 -7.7 -3.8647 | overlap 2452771 AGCTACCAGACGAAA CGTTGCC CACA GGCAACA GAGTTAACAACAGTG CJA_2123 2453770 - 2452856 - | Prephenate dehydrogenase pheA 2454879 - 2453770 - | chorismate mutase/prephenate dehydratase gyrA 2457571 - 2454920 - | DNA gyrase, A subunit TERM 3163 2455588 - 2455599 + g 77 -5.8 -4.65747 | GCAGGCTCTGGAACT CGGT CAAT ACCG TTTTCTTCACAGTTC CJA_2126 2457800 - 2457687 - | hypothetical protein CJA_2127 2457842 - 2459227 + | hydrolase, Atz/Trz family ubiG 2459260 - 2459982 + | ubiquinone biosynthesis O-methyltransferase CJA_2129 2459989 - 2460660 + | HAD-superfamily hydrolase, subfamily IA, variant 3 CJA_2130 2460626 - 2461468 + | oxidoreductase, short chain dehydrogenase/reductase family TERM 3164 2461543 - 2461513 - T 95 -12 -4.30576 | opp_overlap 2461519, overlap 2461519 GGGCCATCAGGAAAA GAAAAAGAGTGGCT ACG AACCACTCTTTTGC ATCACTTCCAACAAC TERM 3165 2461537 - 2461519 - T 100 -9.6 -5.50723 | opp_overlap 2461519, overlap 2461513 TCAGGAAAAGAAAAA GAGTGGCT ACG AACCACTC TTTTGCATCACTTCC TERM 3166 2461519 - 2461537 + T 76 -7.4 -4.21275 | opp_overlap 2461519 2461513 TCAGGAAAAGAAAAA GAGTGGCT ACG AACCACTC TTTTGCATCACTTCC CJA_2131 2461893 - 2461525 - | hypothetical protein TERM 3167 2461662 - 2461677 + g 90 -7.6 -4.87318 | GCTGGAACTCTTCAT CCTGAT AATA ATCAGG TTTTTCCGTTTTGGG CJA_2132 2462434 - 2461946 - | CheW CJA_2133 2463602 - 2462592 - | CheW domain protein TERM 3168 2463177 - 2463197 + g 85 -13.3 -3.14211 | GATACCGACATCCCA CGCCTGGAT TTC ATCCGGGCG TTCCTGAAAAGCGGT CJA_2134 2464426 - 2463602 - | ParA family protein CJA_2135 2465534 - 2464650 - | hypothetical protein CJA_2136 2466291 - 2465545 - | transporter, MotA/TolQ/ExbB proton channel family TERM 3169 2466254 - 2466233 - G 70 -10.9 -2.78384 | CCCCCCTCCATCAGA TTGCCACCA ATAA TGGCGGCAA ATCCAATAATCACGC cheB 2467448 - 2466291 - | protein-glutamate methylesterase CheB TERM 3170 2466978 - 2467010 + g 86 -10.6 -3.86684 | gap 1, overlap 2466978 GGAAGTGGCCGCACT G-GTCGCTGATGGCG TTGG CGCCATCACCGGCGC TTTCGTATCCGTTGT TERM 3171 2466978 - 2467009 + g 71 -10.8 -2.91288 | overlap 2466978 GGAAGTGGCCGCACT GGTCGCTGATGGCG TTGG CGCCATCACCGGCG CTTTCGTATCCGTTG cheA 2469789 - 2467510 - | histidine kinase TERM 3172 2468833 - 2468863 + g 74 -8.9 -4.00124 | TGCAGGTTTGTTAAT CGCAGGGGCAGCA ACAGA TGCAGCGCTTGCG TTTGCTTCTGAACTG cheZ 2470669 - 2469866 - | chemotaxis protein CheZ TERM 3173 2470336 - 2470347 + g 79 -4.4 -5.00884 | opp_overlap 2470336 GGGCGGCCTCATCAA CCAT ATCC ATGG TTTTTTCCGCCGCCT CJA_2140 2471088 - 2470705 - | CheY CJA_2141 2472050 - 2471307 - | FliA TERM 3174 2471457 - 2471441 - G 76 -9.3 -3.74693 | CTTCATCGTAGTAAA GCGCCAG CAC CAGGCGC TCACGTTCGGGCAAC fleN 2472927 - 2472100 - | flagellar number regulator FleN flhF 2474695 - 2473112 - | flagellar biosynthesis protein FlhF TERM 3175 2474267 - 2474284 + g 72 -8.3 -3.72576 | overlap 2474269 CGGCTCTACCTGCTT CTGGCGG GCTT CCGCCTG TTTACTGAGCAGGAA TERM 3176 2474269 - 2474282 + g 71 -9.5 -3.44848 | overlap 2474267 GCTCTACCTGCTTCT GGCGG GCTT CCGCC TGTTTACTGAGCAGG flhA 2476951 - 2474741 - | flagellar biosynthesis protein FlhA TERM 3177 2474986 - 2474969 - G 78 -8.3 -4.16842 | opp_overlap 2474968 2474956 2474979 GCCAGGCTCAATAAA GGCGCTG TCAT CCGCGCC GGCTTTTTGTGCCTG TERM 3178 2474979 - 2474989 + g 71 -2.4 -4.91459 | opp_overlap 2474969, overlap 2474968 2474956 ATAAAGGCGCTGTCA TCCG CGC CGGC TTTTTGTGCCTGTTG TERM 3179 2476734 - 2476722 - G 70 -5.5 -4.30978 | GGGAACGCAGCAAAA TCCAG GGG CCGGA GGGCATAAACAGCCG CJA_2145 2477329 - 2477063 - | hypothetical protein CJA_2146 2478012 - 2477323 - | hypothetical protein TERM 3180 2477648 - 2477658 + g 75 -4.6 -4.78107 | AATTGCCGTATCTGG GCCG CAA TGGC TTTTTGCTGCTGGTC TERM 3181 2478759 - 2478741 - g 100 -6.6 -5.48825 | overlap 2478742 2478743 GAGTATGGAAAAAAA CTGGCAGG CAG CCTGCCCA TCCAGTTTGAACTCA TERM 3182 2478758 - 2478742 - g 72 -7.9 -3.8821 | overlap 2478741 2478743 AGTATGGAAAAAAAC TGGCAGG CAG CCTGCCC ATCCAGTTTGAACTC TERM 3183 2478757 - 2478743 - g 75 -11.4 -2.91842 | overlap 2478742 2478741 GTATGGAAAAAAACT GGCAGG CAG CCTGCC CATCCAGTTTGAACT TERM 3184 2478796 - 2478812 + G 95 -13.7 -3.56099 | opp_overlap 2478793, overlap 2478808 2478809 ATCGCCAAATGACTC CCGGCCA CTA TGGCCGG TTTGACCGGATTGTA TERM 3185 2478957 - 2478943 - g 82 -2.1 -5.42259 | gap 1 CCATTGGCAAAAAAA CACGCG GCCC CG-GTG TCGACCCCTGGATTG cfa1 2478081 - 2479283 + | cyclopropane-fatty-acyl-phospholipid synthase CJA_2148 2479359 - 2480531 + | hypothetical protein TERM 3186 2480698 - 2480686 - g 73 -9.1 -3.64685 | opp_overlap 2480680 AAAATTGCTCAAGAA TGCCG CGC CGGCA ACGTTGTTATGATCG efp 2480668 - 2481234 + | translation elongation factor P TERM 3187 2481261 - 2481279 + T 100 -10.3 -5.11112 | opp_overlap 2481261 GTGAAGCCCTAAAAA TGGCGAC CTTAT GTCGCCA TTTTTATTGAAGTTT TERM 3188 2481279 - 2481261 - T 93 -10.3 -4.62471 | opp_overlap 2481261 GTGAAGCCCTAAAAA TGGCGAC CTTAT GTCGCCA TTTTTATTGAAGTTT CJA_2150 2481844 - 2481305 - | hydrolase, NUDIX family domain protein CJA_2151 2482014 - 2481853 - | hypothetical protein TERM 3189 2482013 - 2481963 - G 93 -13.5 -3.58726 | opp_overlap 2481979, overlap 2481979 CGTGTTTACATAGAA TGGCAGGCATAAAAAATGGCGAC AGAAA GTCGCCATTTTTTATGCTGATCA ACGCAGGATCGATCG TERM 3190 2481979 - 2481997 + g 100 -10.3 -5.32882 | opp_overlap 2481963 2481979 GGCAGGCATAAAAAA TGGCGAC AGAAA GTCGCCA TTTTTTATGCTGATC TERM 3191 2481997 - 2481979 - G 100 -10.3 -5.28176 | opp_overlap 2481979, overlap 2481963 GGCAGGCATAAAAAA TGGCGAC AGAAA GTCGCCA TTTTTTATGCTGATC gdhA 2483379 - 2482033 - | Glu/Leu/Phe/Val dehydrogenase family protein TERM 3192 2483774 - 2483752 - R 100 -11.3 -4.98531 | gap 1, opp_overlap 2483752 GGCCGAAAGTAAAAA GCCACCTGGC CGGG GCC-GGTGGC TTTGATAAACGCTTA TERM 3193 2483752 - 2483774 + r 86 -11.3 -3.737 | gap 1, opp_overlap 2483752 GGCCGAAAGTAAAAA GCCACCTGGC CGGG GCC-GGTGGC TTTGATAAACGCTTA CJA_2153 2484186 - 2483866 - | 'Cold-shock' DNA-binding domain protein CJA_2154 2485485 - 2484643 - | hypothetical protein CJA_2155 2484910 - 2485086 + | hypothetical protein TERM 3194 2485436 - 2485417 - GT 79 -3.5 -5.10163 | overlap 2485404 AAGGGCAAAACAAAA GGATTGC CCTTGC GCACTCC AGGCAGTTCCCATCA CJA_2156 2487757 - 2485502 - | Putative RNA methylase family UPF0020 family TERM 3195 2486097 - 2486128 + g 90 -8 -4.77438 | gap 1, opp_overlap 2486102 2486104 2486107 TGACCTTCCTGCACA CTAAACAGATCGCCC GTC GGGCGCTC-GTTGAG TTTTTCATACTGGCT TERM 3196 2486122 - 2486104 - G 74 -10.2 -3.5032 | opp_overlap 2486097, overlap 2486102 2486107 CCTGCACACTAAACA GATCGCCC GTC GGGCGCTC GTTGAGTTTTTCATA TERM 3197 2486246 - 2486235 - G 72 -5.8 -4.35461 | TCAATATCAGCAAAA CGCT GGGC AGCG CGCGCTTCATCGACT TERM 3198 2488013 - 2487996 - H 71 -9.8 -3.16564 | CTTCCATCGGAGCAA CCGGCC CATATT GGCCGG AAAATGACCGATAAA CJA_2157 2488054 - 2488278 + | ribosome modulation factor-related protein TERM 3199 2488345 - 2488330 - T 79 -11.8 -3.27298 | opp_overlap 2488330 CGCCTGAATCATTAA GCCCGC TCTT GCGGGC TTTGCGTCTTTACTG TERM 3200 2488330 - 2488345 + T 93 -11.8 -3.82208 | opp_overlap 2488330 CGCCTGAATCATTAA GCCCGC TCTT GCGGGC TTTGCGTCTTTACTG pyrD 2489383 - 2488355 - | dihydroorotate oxidase TERM 3201 2489020 - 2489032 + g 70 -4.8 -4.44667 | TAACCTGTGCGACCA GGTG ATCCA CACC TTTGTTATTAAACCC CJA_2159 2489751 - 2489467 - | hypothetical protein TERM 3202 2489769 - 2489753 - R 100 -13.7 -5.04249 | opp_overlap 2489753 CCGCCAAAAAACAAA CCCCCGT TGA ACGGGGG TTGTGTGAAGCAGAT TERM 3203 2489753 - 2489769 + r 93 -13.7 -3.48395 | opp_overlap 2489753 CCGCCAAAAAACAAA CCCCCGT TGA ACGGGGG TTGTGTGAAGCAGAT pul13A 2492388 - 2489791 - | pullulanase, putative, pul13A TERM 3204 2490711 - 2490689 - G 72 -5.5 -4.5442 | gap 1, opp_overlap 2490697 TCCTCAACCATAAAA CGCGTGGTGC CATA GCG-CACGCG CTGGCCTTCTTTGGC TERM 3205 2492367 - 2492354 - G 72 -8.1 -3.85969 | opp_overlap 2492354 CAAATAAACAGACAA CTGGC AAGA GCCAG TCTGTAATTGACGGT CJA_2161 2497444 - 2492594 - | NAD-specific glutamate dehydrogenase TERM 3206 2493233 - 2493221 - G 71 -10.5 -2.93073 | opp_overlap 2493208 2493205 2493203, overlap 2493218 GTTGCGCAAGAACCA GCGCG TTG CGCGC CTGACTTTGCGCATC TERM 3207 2493845 - 2493865 + g 76 -11.2 -3.41693 | CACACTATCCGTCAT CGCAACCA ATAAC TGGTTGCG TTGCTTGGTCGTGAG TERM 3208 2494387 - 2494377 - G 71 -2.4 -5.00616 | TGCCGTTCTAAAAAA CTGG TTT CCGG ATCGGGAGTCGGATC TERM 3209 2497508 - 2497497 - H 73 -2.2 -5.23316 | GACTAGACGAAAAAA CTGC ATAA ACAG TTGAAATGATTGGGA TERM 3210 2498167 - 2498157 - g 70 -6.8 -4.0641 | overlap 2498161 GCCGAGGCAGAGAAA CGCA TCC TGCG CCTGGCGCGCGCCGA CJA_2162 2497617 - 2498576 + | MoxR-like protein TERM 3211 2499377 - 2499392 + G 74 -10.4 -3.53224 | opp_overlap 2499376 TACGCGTGCAACTAC CTGCGC AACA GCGCAG TTTCCAGCAGGCCTA CJA_2163 2498581 - 2499540 + | hypothetical protein CJA_2164 2499587 - 2500114 + | hypothetical protein CJA_2165 2500107 - 2501063 + | von Willebrand factor type A domain protein TERM 3212 2501449 - 2501477 + G 86 -13.8 -2.87344 | CGACATCCTCAAGCG CCGCCAGGACGG CTATA CCGGCCTGGTGG TGTATGCAGGCGATG TERM 3213 2502174 - 2502148 - g 74 -2.3 -5.06414 | gap 2, overlap 2502149 2502151 GTGGCGCAACAAAAA TC-AGCA-GGCCT ACC AGGCCTTGCAAGA AGAACAGACACAAAA CJA_2166 2501060 - 2503054 + | TPR domain protein CJA_2167 2503079 - 2504839 + | hypothetical protein TERM 3214 2504882 - 2504864 - T 100 -13.2 -5.36441 | opp_overlap 2504864 CTTGCAGACAAAAAA TACCAGGC TTG GCCTGGTA TTTTTTTATTGAAAA TERM 3215 2504864 - 2504882 + T 100 -13.2 -5.7946 | opp_overlap 2504864 CTTGCAGACAAAAAA TACCAGGC TTG GCCTGGTA TTTTTTTATTGAAAA CJA_2168 2504933 - 2504841 - | hypothetical protein CJA_2169 2505793 - 2504984 - | hypothetical protein TERM 3216 2506264 - 2506249 - R 76 -2.5 -5.31456 | CGAACCTATAAAAAA CCCAG GCCGAA CTAGG CTTCCAGCGAAATAG TERM 3217 2506371 - 2506338 - R 73 -4.5 -4.76892 | gap 1, overlap 2506340 2506341 ATACGAATGGAAAAA TACGTTCAGGCCGGGA AAC TCCCGGCCATAA-GAA GAGAGGAAAACCAGG pepN 2509067 - 2506395 - | aminopeptidase N TERM 3218 2507440 - 2507450 + g 75 -4.6 -4.8048 | opp_overlap 2507439 AAACCGCGCAATAAG CTGG GTA CCGG TTTTTCCTGTACCCG CJA_2171 2509349 - 2509086 - | hypothetical protein TERM 3219 2509184 - 2509194 + g 80 -5.4 -4.93296 | AACCTGTATGTGTAT CTTG CGG CAAG TTTTTGTGCTCATAG CJA_2172 2510235 - 2509372 - | peptidase, rhomboid family TERM 3220 2509813 - 2509789 - G 70 -6.4 -4.2528 | gap 1 GCCGAAGTGAAGAAA GATC-GGCGTC AGCA GGCGCCAGATC TCACCGCACGCGAGT CJA_2173 2511284 - 2510271 - | serine/threonine protein phosphatase CJA_2174 2512188 - 2511286 - | Predicted sugar kinase TERM 3221 2512324 - 2512339 + Gr 72 -10.4 -2.83903 | opp_overlap 2512315, overlap 2512321 ATTATAGCCCGGCAA CCCTGG CTAG CCAGGG TCAATTTTTCACAGG CJA_2175 2512180 - 2513355 + | hypothetical protein CJA_2176 2514469 - 2513369 - | cyclic nucleotide-binding domain protein TERM 3222 2513633 - 2513604 - G 72 -8.6 -3.79071 | opp_overlap 2513628 GCGAGAATATTCAAA GGCACATTCACC GCCCTG GGCAAATGCGCC TGCGTATATTCTTCT TERM 3223 2514050 - 2514038 - G 79 -3.5 -5.09426 | GGGAACTTTAAAAAA TAAAT TGG ATTTA AGTACTGTCATCATC CJA_2177 2514581 - 2514456 - | hypothetical protein CJA_2178 2515636 - 2514644 - | hypothetical protein CJA_2179 2515733 - 2515629 - | hypothetical protein CJA_2180 2517128 - 2515734 - | hypothetical protein TERM 3224 2516858 - 2516842 - G 71 -9.3 -3.53012 | overlap 2516827 2516843 GCCCCGGCTCCCAAA TCCGGCC CAG GGCCGGC AGAAGCCAATAATTG TERM 3225 2516857 - 2516843 - G 77 -12.8 -2.71712 | overlap 2516827 2516842 CCCCGGCTCCCAAAT CCGGCC CAG GGCCGG CAGAAGCCAATAATT TERM 3226 2516960 - 2516939 - G 73 -3.6 -4.73613 | overlap 2516941 CTATCAGGAAGAAAA CCGCTCCG GTGATG CAGAGCTG GTGGTTGGCCTGCAC CJA_2181 2517455 - 2517342 - | hypothetical protein TERM 3227 2517720 - 2517703 - H 100 -9.8 -4.86133 | opp_overlap 2517703 TACAGATAGCAAAAA GCCCGC AAGTAA GCGGGC TTTTATAAAGTGGCG TERM 3228 2517703 - 2517720 + H 90 -9.8 -4.4009 | opp_overlap 2517703 TACAGATAGCAAAAA GCCCGC AAGTAA GCGGGC TTTTATAAAGTGGCG TERM 3229 2517990 - 2518000 + H 74 -5.4 -4.62002 | CTGATTTTGCTTTTC GTGT CAA ACAC TTTTATATAATTCCT TERM 3230 2518036 - 2518023 - H 78 -6.7 -4.58283 | opp_overlap 2518023 2518021 TAATTCCTGTAAAAA GCCAA AAGC TTGGC TATTTTGGCAACAAC TERM 3231 2519396 - 2519374 - g 71 -9 -3.53563 | overlap 2519362 ACAGGTCTTGTTAAA CCTGCTGCGC AAT GCGCGTCAGG CACTTGGCAACGCTG CJA_2184 2518178 - 2519722 + | sensory box histidine kinase CJA_2185 2519743 - 2520480 + | hypothetical protein TERM 3232 2520623 - 2520606 - g 86 -6.3 -5.07486 | opp_overlap 2520614 CAGCTGCAACAAAAA CTGATTC GTCT GAACCAG GATTTTGCATCATTT trmA 2520513 - 2521637 + | tRNA (uracil-5-)-methyltransferase CJA_2187 2522158 - 2521646 - | putative acetyltransferase, GNAT family CJA_2188 2522625 - 2522158 - | hypothetical protein CJA_2189 2524136 - 2522655 - | RmuC domain protein family TERM 3233 2523123 - 2523102 - G 79 -3.7 -5.05606 | GGGAATAAAAATAAA CACAAAGTC CAGC GACTTAATG CCATCGATCTTTTCA TERM 3234 2523198 - 2523237 + g 86 -9.5 -4.30576 | TATATGTGCAGCCAG GTATTGCTTG-CGCGAGGA TTCA TCCTC-CGTCGAGCAGTAC TTTTCATAATCCGAC TERM 3235 2523419 - 2523433 + g 75 -7.1 -4.43012 | CAAGCACGACCTCGC CCCAG TTGCC CTGGG TTTTGCTGTTACCCT TERM 3236 2523555 - 2523569 + g 79 -4.3 -5.0133 | TGCACTTTCCTTTTC GTAGA CATCT TCTAC TTTTTTACGGAACTC murI 2524246 - 2525085 + | glutamate racemase TERM 3237 2525099 - 2525123 + T 90 -15.7 -2.56288 | opp_overlap 2525101, overlap 2525095 GAAACCTTCCAAAAA AACGGGCCGCT AGC AGCGGCCCGTA TCGATTAAATCCTTT TERM 3238 2525121 - 2525101 - T 100 -18.3 -5.41746 | opp_overlap 2525099 2525095 AACCTTCCAAAAAAA CGGGCCGCT AGC AGCGGCCCG TATCGATTAAATCCT cbp33A 2526359 - 2525166 - | carbohydrate binding protein, putative, cpb33A TERM 3239 2526711 - 2526737 + r 87 -9.5 -4.36595 | opp_overlap 2526711 ATGGGCAATAAAAAA GGCCGATAG CATGAAAGA CTATCGGCC TTTTACGTTTACGTA TERM 3240 2526737 - 2526711 - R 100 -11.6 -5.45652 | opp_overlap 2526711 ATGGGCAATAAAAAA GGCCGATAGCAT GAA AGACTATCGGCC TTTTACGTTTACGTA exuT 2528136 - 2526769 - | hexuronate transporter TERM 3241 2527432 - 2527443 + g 70 -4.4 -4.46215 | CTCGCCGGCATCGTC CAGT TGCA ACTG TTCTTTTTCGCTATC TERM 3242 2527583 - 2527573 - G 81 -6.8 -4.58786 | overlap 2527577 ACCAATAATAATAAA GGCA GTT TGCC AACCCCAGTGGGCTG TERM 3243 2527669 - 2527680 + g 79 -4.4 -5.0133 | AAAAATACCGGTGGC GAAC GAGC GTTC TTTTTTGGGGAAATA TERM 3244 2529098 - 2529076 - g 73 -11.3 -2.59881 | overlap 2529075 2529078 2529091 CACCCAGTGCATAAC CAGCGAGCA GGAAA TGCTCGCCG CCGCACGCTGGAGCC TERM 3245 2529860 - 2529883 + G 80 -11.6 -3.36273 | opp_overlap 2529859 2529858 TCACCGATTCAAATC CTCGGCGCCC TTGA GGGCTCCGGG TTGGTATTCAGCCAC TERM 3246 2530314 - 2530298 - g 77 -10.1 -3.58343 | GCCAGTATCTTTAAA GAGCAGG CCG CCTGCCC CTTCAACGCTTTCGC CJA_2193 2528210 - 2531128 + | hypothetical protein TERM 3247 2533006 - 2532981 - g 78 -12.6 -2.91695 | overlap 2532978 GGCAGGGTTAAATTA CCAGGCGACC GAAATT GATCGCCTGG CCACTCGCATGGCAA TERM 3248 2533451 - 2533428 - g 78 -8.1 -4.37527 | overlap 2533419 2533422 GGACAAGCACGAAAA TGCCGGTCG CATCCT CGACTGGCA GGCCTTCAACCAGGC CJA_2194 2531125 - 2534616 + | UvrD/REP helicase domain protein TERM 3249 2534637 - 2534652 + T 91 -7.5 -5.15634 | opp_overlap 2534637, overlap 2534649 GCTGGAATAAAAAAA CCGCC CCAAAA GGCGG TTTTTTCATAAGCTG TERM 3250 2534652 - 2534637 - T 100 -8.2 -5.7946 | opp_overlap 2534637 2534649 GCTGGAATAAAAAAA CCGCCC CAAA AGGCGG TTTTTTCATAAGCTG CJA_2195 2534918 - 2534682 - | cold shock protein-related protein TERM 3251 2535232 - 2535250 + H 100 -14.6 -5.47218 | CCGGTTATCTCCTGC GGGGCTGA TCT TCAGCCCC TTTTTTTACCTACGC TERM 3252 2536198 - 2536178 - g 93 -8.3 -4.77122 | GTAGATAAAAAAGAA GTCCGTATC CTG GATATGGAC AAATTGCGCGAGATT anr 2535485 - 2536237 + | Transcriptional activator protein anr CJA_2197 2536270 - 2536860 + | hypothetical protein TERM 3253 2536978 - 2536990 + G 74 -10.5 -3.14132 | CGGCATATGGATGCT GCGCG GGT CGCGC TTGCTGGAACGCAAA TERM 3254 2537140 - 2537150 + G 71 -3.2 -4.74103 | GCTGGTTGTTTATAT CACT CTG GGTG TTTTTGCCTTCAAGG CJA_2198 2536895 - 2537278 + | hypothetical protein CJA_2199 2537422 - 2538003 + | hypothetical protein TERM 3255 2538033 - 2538070 + T 100 -21.5 -3.06312 | opp_overlap 2538036 2538043, overlap 2538036 2538043 CCAGGGGCGGCCTAC CAATGTAAAACGGCGCC TTAA GGCGCCGTTTTACATGG TTAGCTGGAAGATTT TERM 3256 2538067 - 2538036 - T 100 -21.8 -3.14132 | opp_overlap 2538033 2538036 2538043, overlap 2538043 GGGGCGGCCTACCAA TGTAAAACGGCGCC TTAA GGCGCCGTTTTACA TGGTTAGCTGGAAGA TERM 3257 2538036 - 2538067 + T 100 -21.8 -2.75064 | opp_overlap 2538036 2538043, overlap 2538033 2538043 GGGGCGGCCTACCAA TGTAAAACGGCGCC TTAA GGCGCCGTTTTACA TGGTTAGCTGGAAGA TERM 3258 2538043 - 2538060 + T 100 -14.1 -4.23892 | opp_overlap 2538043 2538036, overlap 2538036 2538033 CCTACCAATGTAAAA CGGCGCC TTAA GGCGCCG TTTTACATGGTTAGC TERM 3259 2538060 - 2538043 - T 100 -14.1 -4.30014 | opp_overlap 2538036 2538033 2538043, overlap 2538036 CCTACCAATGTAAAA CGGCGCC TTAA GGCGCCG TTTTACATGGTTAGC CJA_2200 2538406 - 2538071 - | hypothetical protein CJA_2202 2538456 - 2538548 + | hypothetical protein CJA_2201 2539651 - 2538545 - | rhodanese-like domain protein TERM 3260 2539619 - 2539631 + g 77 -3.3 -5.04249 | opp_overlap 2539628 GCCTTTAACTGGGCG CGCAT TAT AGGCG TTTGTTTTTTGAACA CJA_2203 2540017 - 2539664 - | cell division protein BolA TERM 3261 2540371 - 2540361 - R 72 -8.2 -3.70076 | GCAAATCTACTGAAA GGCG AAC CGCC AATCGAAGCCTTGAG TERM 3262 2540450 - 2540478 + r 100 -16.2 -3.3344 | opp_overlap 2540456, overlap 2540456 CATACCCCCTTTCAG TAAAAACCCGGG ATTAC CCCGGGTTTTTA TTCTCCAGATTACCT TERM 3263 2540456 - 2540472 + r 100 -10.8 -5.18726 | opp_overlap 2540456, overlap 2540450 CCCTTTCAGTAAAAA CCCGGG ATTAC CCCGGG TTTTTATTCTCCAGA TERM 3264 2540472 - 2540456 - R 95 -11.5 -4.72272 | opp_overlap 2540450 2540456 CCCTTTCAGTAAAAA CCCGGGA TTA CCCCGGG TTTTTATTCTCCAGA galK 2541646 - 2540495 - | galactokinase TERM 3265 2540948 - 2540936 - G 81 -4.7 -5.14563 | opp_overlap 2540941 2540943 GGTTTTACCAAAAAA GGCTG CCG CTGCC TCACATTGGTGGCGC galT 2542730 - 2541651 - | galactose-1-phosphate uridylyltransferase TERM 3266 2542835 - 2542859 + r 100 -15.8 -4.26019 | opp_overlap 2542835 CACAACATAAAAAAA GCAGGGTTCC CGGAA GGAACCCTGC TTTTAAATATAGTTG TERM 3267 2542859 - 2542835 - R 100 -16.5 -5.84432 | opp_overlap 2542835 CACAACATAAAAAAA GCAGGGTTCCC GGA AGGAACCCTGC TTTTAAATATAGTTG CJA_2206 2543264 - 2542887 - | diacylglycerol kinase TERM 3268 2543089 - 2543075 - G 72 -5.7 -4.51196 | overlap 2543067 TCCAAACCCAGAAAA TGCTG GCAAT CAGCA AGATTAACTCTACCG CJA_2207 2543418 - 2543960 + | membrane-associated phospholipid phosphatase TERM 3269 2543996 - 2544029 + F 86 -5.3 -5.45652 | CTTGTCTTCGTTCAC TTGCCTCGCATTG ATTCACTC CAGTGCAGGGCAA TTTTTTATTGGGGCT TERM 3270 2544884 - 2544865 - g 93 -8.6 -5.16151 | opp_overlap 2544865 CAAATGGAACAAAAA TCCAATGC CATA GCACTGGA TCAATTAGGCTATGG gt1A 2544049 - 2545113 + | glycosyl transferase, putative, gt1A TERM 3271 2545131 - 2545165 + T 93 -9.3 -4.8048 | gap 1 CTTAGTCGGGCATGA TC-GGGCGGCGCGA AGCCTTGA TCGCGCCGCGCAGA TTTTTACTATCCAAC CJA_2209 2545536 - 2545117 - | peptidyl-tRNA hydrolase domain protein mucC 2546025 - 2545549 - | positive regulator for alginate biosynthesis MucC TERM 3272 2545905 - 2545878 - G 72 -8.4 -3.77831 | overlap 2545870 CCAGCAACACCCAAA GGTAAGAGGGGT TGGC ACCCCACTTAGC CATCAAACTCTGGCC mucB 2547065 - 2546067 - | sigma factor algU regulatory protein MucB TERM 3273 2546768 - 2546737 - G 73 -11.6 -2.57985 | overlap 2546733 TTACAATCCAACGCA CGTCCTGAACGTGA AATT TCACGTTCAGGGCC ATTCAAATGCTGCAG TERM 3274 2546844 - 2546829 - G 70 -6.8 -4.0828 | gap 1, opp_overlap 2546830, overlap 2546830 ATGGAAAATACGAAA CCCCTGC AAA GC-GGGG TTATCCTTGTGCTGG TERM 3275 2546830 - 2546844 + g 73 -9.2 -3.57783 | opp_overlap 2546829 2546830 TGGAAAATACGAAAC CCCTGC AAA GCGGGG TTATCCTTGTGCTGG mucA 2547859 - 2547164 - | mucA TERM 3276 2547913 - 2547899 - R 76 -4.2 -4.92314 | overlap 2547901 ATGAACCCATAAAAA CAGTGC TGT GCACCA CCTTCAATTTTACTG TERM 3277 2547911 - 2547901 - R 71 -6.8 -4.07789 | overlap 2547899 GAACCCATAAAAACA GTGC TGT GCAC CACCTTCAATTTTAC CJA_2213 2548695 - 2548105 - | RNA polymerase sigma-H factor (Sigma-30) TERM 3278 2548582 - 2548602 + g 72 -7.5 -3.91084 | opp_overlap 2548581 2548578, overlap 2548584 2548596 CAGGCGACTAATCAC CGCCAGCAC CTT GTGCTGGTA TTTGATTACCAATAA TERM 3279 2548584 - 2548600 + g 86 -12.3 -3.54414 | opp_overlap 2548581 2548578, overlap 2548582 2548596 GGCGACTAATCACCG CCAGCAC CTT GTGCTGG TATTTGATTACCAAT nadB 2548998 - 2550635 + | L-aspartate oxidase CJA_2215 2551403 - 2551158 - | TPR repeat family protein CJA_2216 2551589 - 2552557 + | hypothetical protein CJA_2217 2552578 - 2553414 + | hypothetical protein TERM 3280 2553489 - 2553450 - T 95 -12.4 -3.94936 | opp_overlap 2553453 2553455 2553462, overlap 2553452 2553455 2553462 AATCAACACATGAAA CACCATAAAAAAGCGGTC AACA GACCGCTTTTTTATATTA TCAACCAAGGATTGT TERM 3281 2553487 - 2553452 - T 88 -12.8 -3.55205 | opp_overlap 2553453 2553455 2553462, overlap 2553450 2553455 2553462 TCAACACATGAAACA CCATAAAAAAGCGGTC AACA GACCGCTTTTTTATAT TATCAACCAAGGATT TERM 3282 2553453 - 2553486 + T 86 -14.1 -3.28791 | opp_overlap 2553452 2553450 2553455 2553462, overlap 2553455 2553462 CAACACATGAAACAC CATAAAAAAGCGGTC AACA GACCGCTTTTTTATA TTATCAACCAAGGAT TERM 3283 2553484 - 2553455 - T 100 -16.7 -2.89361 | opp_overlap 2553455 2553453 2553462, overlap 2553452 2553450 2553462 ACACATGAAACACCA TAAAAAAGCGGTC AACA GACCGCTTTTTTA TATTATCAACCAAGG TERM 3284 2553455 - 2553484 + T 100 -16.7 -3.21276 | opp_overlap 2553452 2553450 2553455 2553462, overlap 2553453 2553462 ACACATGAAACACCA TAAAAAAGCGGTC AACA GACCGCTTTTTTA TATTATCAACCAAGG TERM 3285 2553462 - 2553477 + T 100 -10.4 -5.5208 | opp_overlap 2553455 2553452 2553450 2553462, overlap 2553455 2553453 AAACACCATAAAAAA GCGGTC AACA GACCGC TTTTTTATATTATCA TERM 3286 2553477 - 2553462 - T 100 -10.4 -5.38321 | opp_overlap 2553462 2553455 2553453, overlap 2553455 2553452 2553450 AAACACCATAAAAAA GCGGTC AACA GACCGC TTTTTTATATTATCA rpoS 2554516 - 2553509 - | RNA polymerase sigma factor RpoS TERM 3287 2553966 - 2553950 - G 74 -10.1 -3.48593 | overlap 2553951 CAGCTTTTGAGATAA CTCGCGC GCA GCGCGAA GATAGACATTCAATT TERM 3288 2553965 - 2553951 - G 73 -11.4 -2.68942 | overlap 2553950 AGCTTTTGAGATAAC TCGCGC GCA GCGCGA AGATAGACATTCAAT nlpD 2555501 - 2554656 - | lipoprotein NlpD pcm 2556345 - 2555671 - | protein-L-isoaspartate O-methyltransferase TERM 3289 2555819 - 2555808 - G 72 -5.8 -4.36411 | opp_overlap 2555815 CAGGAATTACCAAAA CACC CCCC GGTG CCAACTGCTTTAACA truD 2557454 - 2556444 - | tRNA pseudouridine synthase D TERM 3290 2557367 - 2557346 - G 72 -10.3 -3.28001 | opp_overlap 2557348, overlap 2557341 CAGGTTCAAATCCAA GATTTTCAG TTAC CTGAAAATC TTCAGGAACGGTACG TERM 3291 2557519 - 2557534 + r 82 -6 -5.24531 | opp_overlap 2557520, overlap 2557520 GGCACTGATAAAAAA ACCGCC CTCG GGCGGC TTTTTTATCACACCT TERM 3292 2557520 - 2557533 + r 79 -9.5 -3.73995 | opp_overlap 2557520, overlap 2557519 GCACTGATAAAAAAA CCGCC CTCG GGCGG CTTTTTTATCACACC TERM 3293 2557533 - 2557520 - R 100 -9.5 -5.64274 | opp_overlap 2557520 2557519 GCACTGATAAAAAAA CCGCC CTCG GGCGG CTTTTTTATCACACC ispF 2558034 - 2557555 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 2558808 - 2558038 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJA_2224 2559108 - 2558827 - | Septum formation initiator superfamily TERM 3294 2558882 - 2558861 - G 100 -3 -5.73339 | ATAATCATAAAAAAA GTCTCATC TTTTTT GATCAGAC CTATATCGTTACGCG TERM 3295 2559102 - 2559090 - G 73 -4.1 -4.74215 | overlap 2559078 2559085 ATAGCAGCAACAAAA TAGCT GCA AGCCA TTTCATGGTAATCAC TERM 3296 2559123 - 2559158 + r 76 -12 -2.50994 | opp_overlap 2559125 2559133, overlap 2559133 TGGTAATCACCCATA AATACATAAAGGCCGA TCAT TCGGCCTTTATGTACA GTTGCTACAATTAAG TERM 3297 2559156 - 2559125 - R 100 -19 -3.95153 | opp_overlap 2559123 2559133, overlap 2559133 GTAATCACCCATAAA TACATAAAGGCCGA TCAT TCGGCCTTTATGTA CAGTTGCTACAATTA TERM 3298 2559133 - 2559148 + r 87 -10.4 -4.06491 | opp_overlap 2559125 2559133, overlap 2559123 CCATAAATACATAAA GGCCGA TCAT TCGGCC TTTATGTACAGTTGC TERM 3299 2559148 - 2559133 - R 90 -10.4 -4.31166 | opp_overlap 2559133 2559123, overlap 2559125 CCATAAATACATAAA GGCCGA TCAT TCGGCC TTTATGTACAGTTGC eno 2560458 - 2559169 - | phosphopyruvate hydratase TERM 3300 2560110 - 2560091 - G 79 -12.8 -3.01791 | ACTTTTTTGGCAACA GCCGCCGC CTTG GCAGCGGC AAGAGACACGGCAAG kdsA 2561340 - 2560489 - | 3-deoxy-8-phosphooctulonate synthase TERM 3301 2561378 - 2561359 - R 89 -6.4 -5.41746 | overlap 2561360 AATTCCTTAAAAAAA TTGCCACT GATA AGTGGCAT AAATCATTTACTTTT TERM 3302 2561377 - 2561360 - R 80 -9.9 -3.83963 | overlap 2561359 ATTCCTTAAAAAAAT TGCCACT GATA AGTGGCA TAAATCATTTACTTT pyrG 2563089 - 2561386 - | CTP synthase CJA_2228 2563780 - 2563238 - | Regulatory protein recX TERM 3303 2563383 - 2563355 - GR 72 -8.9 -3.64703 | overlap 2563356 TGCCTCGGAGGGAAA GGCAGCACCAAAA CGC TTTTGACGCTGCT GGCAGGCAGAATCAG TERM 3304 2563382 - 2563356 - GR 79 -12.4 -2.78679 | overlap 2563355 GCCTCGGAGGGAAAG GCAGCACCAAAA CGC TTTTGACGCTGC TGGCAGGCAGAATCA CJA_2229 2564297 - 2563722 - | putative lipoprotein TERM 3305 2563804 - 2563814 + gr 71 -2.4 -4.91109 | TGAGGCGACAGGCCA CGAC TCA GGCG TTTTTGTGATACACC TERM 3306 2564407 - 2564421 + r 72 -9.2 -3.54459 | opp_overlap 2564407 GCAGCCCACAAAAAA GCCCCG TTA TGGGGC TTTGAGAGGAGTTGC TERM 3307 2564421 - 2564407 - R 100 -8.5 -5.26316 | opp_overlap 2564407 GCAGCCCACAAAAAA GCCCC GTTAT GGGGC TTTGAGAGGAGTTGC recA 2565503 - 2564442 - | recA protein CJA_2231 2566135 - 2565620 - | competence/damage-inducible protein CinA C-terminal domain subfamily TERM 3308 2566038 - 2566020 - GH 74 -10.2 -3.14602 | overlap 2566005 2566018 GCCACTGCAGTAATA GCGGCGGC AAC ACCACCGC CGGTACAAGACTCTG CJA_2232 2566382 - 2566158 - | hypothetical protein CJA_2233 2566134 - 2566280 + | hypothetical protein TERM 3309 2566452 - 2566476 + Tr 83 -12.9 -3.12351 | opp_overlap 2566452 TATTAAAAAATAAAA TCTCCGGCAAG ACA CTTACCGGAGA TTAACTATAGCAACC TERM 3310 2566476 - 2566452 - TR 100 -15.1 -5.45813 | opp_overlap 2566452 TATTAAAAAATAAAA TCTCCGGCAAG ACA CTTACCGGAGA TTAACTATAGCAACC CJA_2234 2568430 - 2566514 - | cysteine desulfurase, SufS subfamily TERM 3311 2566719 - 2566744 + g 91 -10.5 -4.15222 | TCCGTTTTATATCCA GCCAGTGTG AAAGACAA CACACTGGC TTTGTTAGCCGCAGT srpI 2569469 - 2568537 - | major membrane protein I (MMP-I) (35 kDa antigen) TERM 3312 2569286 - 2569296 + g 70 -4.6 -4.58283 | AACAGGTGACGGATA CCCG CGT TGGG TTTTTCACACGGTTC CJA_2236 2569931 - 2569671 - | Helix-turn-helix domain protein srpH 2570890 - 2569928 - | serine acetyltransferase TERM 3313 2570708 - 2570698 - G 81 -6.8 -4.63184 | AACGCATGGGAAAAA GTGC CCC GCAC AAATCGCGAATGATA CJA_2238 2571441 - 2570929 - | Rhodanese-like domain protein TERM 3314 2571385 - 2571360 - G 77 -6.1 -4.69053 | opp_overlap 2571362, overlap 2571362 TAGCAGCTAATAAAA TAGCGGGGA TTTCGCTC TCCCCGCTT TTCTTTTCTTCAGGT TERM 3315 2571362 - 2571383 + g 100 -8.7 -5.27476 | opp_overlap 2571362 2571360 GCAGCTAATAAAATA GCGGGGA TTTCGCTC TCCCCGC TTTTCTTTTCTTCAG TERM 3316 2571383 - 2571362 - G 74 -8.7 -3.95554 | opp_overlap 2571362, overlap 2571360 GCAGCTAATAAAATA GCGGGGA TTTCGCTC TCCCCGC TTTTCTTTTCTTCAG TERM 3317 2572154 - 2572138 - g 74 -2.2 -5.03747 | AAATCTTTGAAAAAA TCCTCA GCGAT TGCGGA CTTGGCCCCGAGCGG CJA_2239 2571720 - 2572466 + | hypothetical protein TERM 3318 2572539 - 2572492 - T 72 -10.8 -2.87931 | opp_overlap 2572507, overlap 2572495 2572507 CTGATTTTTGAGATA GCATCTACAAAAAAACCAACAC CGAA GTGTTGGTTTTTTTGTCAGTGG ATACAGCGCAAAACA TERM 3319 2572537 - 2572495 - T 81 -13.1 -2.6927 | gap 1, opp_overlap 2572507, overlap 2572492 2572507 ATTTTTGAGATAGCA TCT-ACAAAAAAACCAACAC CGAA GTGTTGGTTTTTTTGTCAGT GGATACAGCGCAAAA TERM 3320 2572507 - 2572524 + T 100 -9.9 -5.64274 | opp_overlap 2572507 2572495 2572492 GCATCTACAAAAAAA CCAACAC CGAA GTGTTGG TTTTTTTGTCAGTGG TERM 3321 2572524 - 2572507 - T 100 -9.9 -5.64274 | opp_overlap 2572507, overlap 2572495 2572492 GCATCTACAAAAAAA CCAACAC CGAA GTGTTGG TTTTTTTGTCAGTGG cysA-2 2573630 - 2572572 - | sulfate/thiosulfate import ATP-binding protein cysA 2 TERM 3322 2573721 - 2573737 + r 93 -10.8 -4.59773 | GCTCAGGTCTCCTGC GCGGCC GCACG GGCCGC TTTTTCGCGGTCGCG CJA_2241 2574604 - 2573708 - | sulfate ABC transporter, permease protein CysW CJA_2242 2575505 - 2574606 - | sulfate ABC transporter, permease protein CysT TERM 3323 2574714 - 2574677 - GH 76 -4.2 -4.98103 | gap 2, opp_overlap 2574699, overlap 2574678 2574680 2574681 2574691 GAATAAAAGAGAAAA CCA-G-CAGTACCACAGC CAGG GCTGCGGCACCGGCATAG TTGTACTGCTCCAGT TERM 3324 2574708 - 2574681 - GH 76 -12 -2.57472 | opp_overlap 2574699, overlap 2574680 2574678 2574677 2574691 AAAAGAGAAAACCAG CAGTACCACAGC CAGG GCTGCGGCACCG GCATAGTTGTACTGC TERM 3325 2574822 - 2574791 - GH 74 -2.1 -5.06414 | overlap 2574792 2574794 TGCCCGCAATAAAAA TCACCGAGCCGTA TTCACC CACGGCGCGGGCA AAGGACAGGGCAAAG TERM 3326 2575184 - 2575170 - GH 74 -2.8 -5.00884 | overlap 2575171 ACGCTTGCCAAAAAA CTGGTA GCG CACCAA CACCCAGGCGACCAC TERM 3327 2575514 - 2575487 - GH 76 -4.8 -4.82901 | gap 1, opp_overlap 2575506, overlap 2575473 2575489 2575490 2575506 CGTGTTGTAGAAAAA CAGCACCGG-CGT ATG ACAACCGGCGATG CCGGTTGGTCGGCAC TERM 3328 2575506 - 2575518 + Gr 74 -10.5 -3.14132 | opp_overlap 2575490 2575487 2575489 2575506 ACCGGCGTATGACAA CCGGC GAT GCCGG TTGGTCGGCACAGCG TERM 3329 2575518 - 2575506 - gR 77 -10.5 -3.40522 | opp_overlap 2575506, overlap 2575490 2575487 2575489 ACCGGCGTATGACAA CCGGC GAT GCCGG TTGGTCGGCACAGCG CJA_2244 2575499 - 2575600 + | hypothetical protein CJA_2243 2576601 - 2575597 - | sulfate ABC transporter, periplasmic binding protein component TERM 3330 2575769 - 2575787 + g 72 -5.9 -4.34402 | CGGTAGAAGTGCTTG CCGGCAA TGTCC TGGCCGG TTTTGCTGTAAAGGA CJA_2245 2577050 - 2576817 - | hypothetical protein TERM 3331 2577027 - 2577011 - G 71 -10.8 -2.87132 | GGCCTCCTTCACACA CCGGGC CCAAT GCCCGG CAACGACGCCATCCT CJA_2246 2579593 - 2577224 - | TonB-dependent receptor TERM 3332 2577642 - 2577619 - G 72 -8.3 -3.80114 | opp_overlap 2577624, overlap 2577624 CACCAATGTAGTAAA TGAAATCTG TGTATT CAGATTTCA GAAACCCCAGGGATC TERM 3333 2579291 - 2579258 - G 81 -7.3 -4.59109 | gap 1, opp_overlap 2579247 TATACCGCGTAAAAA CCAGCGCGGTTTTCCG GTG CGGCCA-CCGCCCTGG GCTGACAGGTTAGGC TERM 3334 2579531 - 2579519 - G 76 -7.7 -4.24123 | GGAATAACCGGAAAA TGCCA GGT TGGCA ATCAACAAAGGCAAT TERM 3335 2579845 - 2579821 - R 100 -14.4 -5.09225 | AGGGGATGTAAAAAA TGCCCATCGT TTATC ACGATGGGCA TCACTAAAAGGTGCC CJA_2247 2581679 - 2579910 - | unidentified transporter-ATP binding TERM 3336 2581087 - 2581072 - G 70 -6 -4.15222 | ATTTCCGCTAACAAA CCGGTC ATAC GTCCGG CAAATTCCTGCCAAC CJA_2248 2582293 - 2581676 - | nitroreductase family protein TERM 3337 2581739 - 2581726 - G 82 -2.4 -5.40004 | CAGCAAAGGAAAAAA TACC CTCTGC GGTA AAACTATTCACCGGG CJA_2249 2584282 - 2582360 - | Bacterial extracellular solute-binding protein, family 5 domain protein TERM 3338 2582575 - 2582585 + g 75 -5.4 -4.62069 | opp_overlap 2582575 AACGCTGGTTGAACA TCAC ATA GTGA TTTTTCAGGTAGCGC TERM 3339 2583729 - 2583715 - G 91 -5.6 -5.45652 | overlap 2583717 ACTTGGAAGAAAAAA CCGGCA GGC TGCCCG CAATAAATGACAGAT TERM 3340 2584232 - 2584208 - G 86 -7.1 -5.00616 | overlap 2584213 GGGCTCGCCAAAAAA TGCAAGGGC ATGGGCA GCCCATGCA GACGATGGAGCAAAC TERM 3341 2584304 - 2584316 + r 76 -9.1 -3.72141 | opp_overlap 2584303 GGCAATTACAATGAG GCCTG TAT CAGGC TTTGGGTATAGGTGT CJA_2250 2585916 - 2584294 - | ABC transporter domain protein TERM 3342 2584824 - 2584791 - G 76 -7.4 -4.17762 | gap 1, opp_overlap 2584812 GATCCTGGAAAACAA CTTGCAA-GCGCGCA GACAG TGCGCGCCTTGCGCG TTTTGGCAGCCGGTT TERM 3343 2584812 - 2584824 + g 88 -10.5 -4.08064 | opp_overlap 2584791 AGCGCGCAGACAGTG CGCGC CTT GCGCG TTTTGGCAGCCGGTT TERM 3344 2585292 - 2585270 - G 70 -6.9 -4.00694 | opp_overlap 2585288, overlap 2585268 GTAATCAACAAAATA GACATGCCC TCACC GGGCTTGCC CGCTTGGCGATTACG TERM 3345 2585507 - 2585531 + g 79 -4.9 -5.0133 | opp_overlap 2585486 2585487, overlap 2585511 TCCGGTTCGCGGATG CCGGTGCGC GCCAGCA GCGCAATGG TTTTTTCACGCGCTG CJA_2251 2587145 - 2585913 - | Binding-protein-dependent transport systems inner membrane component domain protein TERM 3346 2586036 - 2586024 - G 73 -9.1 -3.70068 | TACCAGAACCGTAAA TGCGG CTA CCGCA ATCCACCAGGCATCC CJA_2252 2588206 - 2587142 - | ABC transporter, permease protein TERM 3347 2587431 - 2587399 - G 75 -7 -4.37711 | overlap 2587401 TCACCAAAGGTAAAA GTGCATTGCGGAAG ACATG CTTCCACAACACGC GGCGTTCGGATAACC TERM 3348 2587765 - 2587752 - G 75 -5.2 -4.58773 | GTCACGAAATCAAAA CGCG ATCCGG CGCG CACGGCCTTGGCAAC TERM 3349 2588615 - 2588625 + G 70 -6.8 -4.07568 | opp_overlap 2588615 GCCCTTGTATAACCA GCTC AAG GAGC TTTTGCGCGGGCAAA CJA_2253 2588559 - 2589347 + | transcriptional regulator, GntR family TERM 3350 2589733 - 2589719 - g 76 -4.2 -5.0133 | opp_overlap 2589719 2589727, overlap 2589721 2589729 TACGCCGTTAAAAAA GTCCAT CAC ATGGGC TCCTATGTGTTGCCC CJA_2254 2589344 - 2591083 + | FrdA CJA_2255 2591100 - 2591345 + | ferredoxin, 4Fe-4S TERM 3351 2591364 - 2591385 + F 74 -3.7 -5.03314 | gap 1, overlap 2591366 2591368 2591369 ACCGAATTGATATTT GCTACCCGAA AAC TTCGGAT-GC TTTTTTCACAATACC CJA_2256 2591466 - 2592857 + | ABC transporter substrate-binding protein TERM 3352 2592909 - 2592943 + G 73 -11.3 -2.65298 | overlap 2592908 CAGTGGCAGCGCCTC GCCTTGCAGACCAGC TCCCT GCTGGCCTGCCTGGC CTTCTGGTACCTGGC TERM 3353 2593059 - 2593081 + G 85 -11.3 -3.57387 | opp_overlap 2593058 GTGATTTCCAGCAAG CTGCTGCCG CACCT TGGCAGCAG TTTAAGCCGTGTCTT CJA_2257 2592867 - 2593667 + | ABC transporter, permease protein CJA_2258 2593667 - 2594512 + | ABC transporter ATP-binding protein TERM 3354 2594844 - 2594831 - g 73 -3.7 -4.75174 | overlap 2594832 GAGCCAATTGAAAAA CCCCG ACAG CGGGC GAATTATCCTGCCCT CJA_2259 2594538 - 2595497 + | HEAT repeat protein TERM 3355 2595747 - 2595767 + G 74 -7.5 -4.0641 | overlap 2595748 TCAGCGATGGCCATG ACCGGGGAA TTT TTCCCTGGG TTTATCTCGCTAAAA TERM 3356 2595748 - 2595766 + G 72 -11 -3.03525 | overlap 2595747 CAGCGATGGCCATGA CCGGGGAA TTT TTCCCTGG GTTTATCTCGCTAAA CJA_2260 2595494 - 2595793 + | hypothetical protein CJA_2261 2596345 - 2595806 - | alanine acetyl transferase-like protein CJA_2262 2598070 - 2596418 - | protein phosphatase family protein TERM 3357 2596655 - 2596670 + g 70 -10.4 -3.17392 | ATGCGATGTGTGCAG GCTGCG GTAG CGCAGC TTGCGTTGCGCCGTC CJA_2263 2598958 - 2598146 - | formate/nitrate transporter CJA_2264 2599385 - 2599290 - | hypothetical protein CJA_2265 2601013 - 2599493 - | putative oligopeptide binding protein (ABC superfamily, peri_bind)(OppA) TERM 3358 2600172 - 2600159 - G 76 -9.5 -3.82218 | opp_overlap 2600157 2600159 ACGCACATCATCAAA CGGCG CTTT CGCCG TATTCATATTGAATG CJA_2266 2602295 - 2601054 - | Alkanesulfonate monooxygenase (FMNH2-dependentaliphatic sulfonate monooxygenase) TERM 3359 2601109 - 2601121 + g 100 -10.5 -4.64676 | GCAGTGGCCTTTCTC GCCGC CAA GCGGC TTTTGTTGAGGATAG CJA_2267 2604961 - 2602307 - | putative TonB dependent receptor TERM 3360 2603444 - 2603472 + g 85 -10.4 -4.26344 | ACCGGCAGGGTTTAG GTCTGTAATACC AAACA GGTATTGCGGAC TTTTGGTCGAAGTAT TERM 3361 2604773 - 2604787 + g 70 -6.4 -4.19678 | opp_overlap 2604769, overlap 2604769 GCCCGGCAACACATC GTCAGC GCT GTTGAC TTTATTGCCATGTAC TERM 3362 2604957 - 2604947 - G 81 -6.8 -4.65895 | GCGTGGATTCAAAAA CAGC TTG GCTG ACACTACCAACTCCT CJA_2268 2605290 - 2605388 + | hypothetical protein CJA_2269 2605607 - 2605467 - | hypothetical protein CJA_2270 2605579 - 2606826 + | acyl-CoA dehydrogenase family protein TERM 3363 2607614 - 2607598 - g 74 -2.9 -5.00616 | TTGGCCTGGAAAAAA GCCCG GGAGATT CAGGC AACCCTGGAAAAAAA CJA_2271 2606881 - 2607954 + | putative sulfonate monooxygenase TERM 3364 2608097 - 2608110 + G 74 -8.1 -4.07568 | opp_overlap 2608092 2608096 CCGCGATGAAGCCAG CCTGG CATT CCAGG TTTTCCGCGAAACCA CJA_2272 2608005 - 2608385 + | hypothetical protein TERM 3365 2609227 - 2609243 + G 72 -4.3 -4.66938 | opp_overlap 2609208 GTTTACTACAACACC CCGGCAT TTG GTGGCGG TTTTGTATTCAACCT CJA_2273 2608684 - 2609790 + | putative porin TERM 3366 2609826 - 2609857 + F 95 -8 -5.42259 | opp_overlap 2609826 CTGCGGTGTAAGTAA CAAGGGGTGGGC CAATAAAA GCCTGCCTCTTG TTTTTTTGCAGGTGC mgtC 2609899 - 2610597 + | Mg(2+) transport ATPase TERM 3367 2611211 - 2611193 - g 85 -6.6 -4.87786 | overlap 2611194 GCAACCGCACAAAAA CCGCCGGA TTA TCGGGCGA TCTACCAGGCCCTGC TERM 3368 2611511 - 2611532 + G 77 -10.1 -3.59979 | overlap 2611498 GCCGGTTCAGCGGTG GCAGGTAGC CATC GCTACCCGC TTTCACCTACAACAG CJA_2275 2610725 - 2611633 + | probable amidotransferase CJA_2276 2613021 - 2611663 - | serine/threonine protein kinase TERM 3369 2612243 - 2612195 - G 71 -3.1 -4.77775 | overlap 2612198 2612217 2612218 AGCGCATAAAAGAAA CCATCGC-GCGCGCCGATATAAA CCCGC TGCGAATCGACGCGCGGCGA-GG CGGTGAAGCCCTGCA TERM 3370 2612592 - 2612616 + g 72 -7 -4.17657 | opp_overlap 2612606 CAAAACGCTGTTCAC CGCCAGTGGC AAATC GCCACAGGAG TTTTCCGCTGTGCTG CJA_2277 2614593 - 2613094 - | putative Transcriptional regulator CadC TERM 3371 2613997 - 2614011 + g 75 -11.4 -3.05384 | opp_overlap 2613968, overlap 2613994 GCGCCAGCCCTCCGC CTGGCC ACT GGCCAG TTGGGTGCCCGCCAG CJA_2278 2615075 - 2614731 - | 4a-hydroxytetrahydrobiopterin dehydratase (PCD) TERM 3372 2615228 - 2615210 - R 100 -14.6 -5.24129 | CTCTGGCATAAAAAA GCCCACTC AAG GAGTGGGC CAGGCAGGTTTCAAA TERM 3373 2615366 - 2615308 - R 83 -9.1 -4.26792 | gap 1, overlap 2615309 2615311 ACAGAAATGCGAAAA GTACGGCTACCGAACCACATCACC TCTCCCTTCACG GGT-ATGTGGCTCGATAGCCGCAA AAAACTCGCCCATGG TERM 3374 2615365 - 2615309 - R 81 -12.6 -3.14991 | gap 1, overlap 2615308 2615311 CAGAAATGCGAAAAG TACGGCTACCGAACCACATCACC TCTCCCTTCACG GGT-ATGTGGCTCGATAGCCGCA AAAAACTCGCCCATG TERM 3375 2615363 - 2615311 - R 83 -13 -3.1236 | gap 1, overlap 2615309 2615308 GAAATGCGAAAAGTA CGGCTACCGAACCACATCACC TCTCCCTTCACG GGT-ATGTGGCTCGATAGCCG CAAAAAACTCGCCCA CJA_2279 2615466 - 2615314 - | hypothetical protein TERM 3376 2615386 - 2615371 - G 90 -6.8 -5.04385 | GATAGCCGCAAAAAA CTCGCC CATG GGCAAG GCATCAGCCTCACCA avtA 2616935 - 2615679 - | valine--pyruvate aminotransferase TERM 3377 2616303 - 2616288 - G 70 -5.4 -4.33417 | gap 1, overlap 2616289 2616290 CCCATCCACAATAAA CG-GCAC CCG GTGCTCG CGCGCCAGGGCATCC TERM 3378 2616897 - 2616908 + g 70 -4.4 -4.56597 | GGTGACTATGCCAGC CTCT GTGC AGAG TTTTTGACCAAAGCG CJA_2281 2617370 - 2617005 - | response regulator CJA_2282 2618767 - 2617484 - | probable ribonuclease TERM 3379 2617548 - 2617535 - G 74 -2.3 -5.05782 | ATTTACTGCAAAAAA TGCCG ATAA CGTCA GATCCCAGGACTGGG TERM 3380 2617743 - 2617722 - G 73 -3.6 -4.75289 | TAGCACAATACAAAA TCACCCTG TTGGGT CTGGGCGA TAACGTGCCGGCCCA arsC 2618897 - 2619241 + | arsenate reductase CJA_2284 2619254 - 2619868 + | trp repressor binding protein CJA_2285 2619898 - 2620350 + | hypothetical protein sppA 2620422 - 2622329 + | signal peptide peptidase SppA, 67K type TERM 3381 2622347 - 2622306 - Tf 87 -10.7 -4.18018 | overlap 2622307 GGTGTTTACGTAAAA TGCCTGGAATGTGTGGCGC CCTA GCGCCACCCACTCCCCGCG TCCCTGCCATCACCC TERM 3382 2622346 - 2622307 - Tf 85 -14.2 -3.10597 | overlap 2622306 GTGTTTACGTAAAAT GCCTGGAATGTGTGGCGC CCTA GCGCCACCCACTCCCCGC GTCCCTGCCATCACC CJA_2287 2624732 - 2622369 - | putative tonB-dependent receptor protein (outer membrane salicin receptor) TERM 3383 2623915 - 2623902 - Gf 79 -8.1 -4.19735 | TGGCGTAAAACCAAA GCGGT CAGC ACCGC CCGGCTCACTGTGCA CJA_2288 2624914 - 2624783 - | hypothetical protein CJA_2289 2624726 - 2624986 + | hypothetical protein TERM 3384 2625915 - 2625936 + G 72 -8 -3.93984 | gap 1, overlap 2625913 2625931 2625932 TGCCCTGCTGCCGCT GGTGACCGG TTTTC CCGG-CACC TTTATCGGTGCGTTT TERM 3385 2625931 - 2625948 + G 71 -2.6 -5.00616 | overlap 2625915 2625932 GTGACCGGTTTTCCC GGCACC TTTATC GGTGCG TTTTTTACCGGCAGC CJA_2290 2625094 - 2626158 + | ABC transporter, permease protein TERM 3386 2627166 - 2627181 + G 81 -9 -4.13767 | opp_overlap 2627159 ACCAAAATCCACCGG CCATGG TCGG CCATGG TTTTAACCTGCGCCA TERM 3387 2627381 - 2627396 + G 77 -6.8 -4.57569 | GCGCCCTGGCGCAAC CAGCTG GACC CGGCTG TTTTTGGCCCGATGG CJA_2291 2626283 - 2628043 + | Bacterial extracellular solute-binding protein, family 5 domain protein TERM 3388 2628109 - 2628142 + T 83 -13.9 -2.53263 | ATAGATTTTATGGCA TGATCCAGCTACGCC CGCA GGCCTCGCTGGATCA TCGGTTGGCAATAGC CJA_2292 2630591 - 2628159 - | TonB-dependent receptor protein TERM 3389 2628229 - 2628207 - G 88 -12 -3.76224 | opp_overlap 2628196 GCGTGACTCACCAAA CCAGCCTTCG TTG CGAATGCTGG TGAAGTAGGTCTTAT TERM 3390 2628726 - 2628714 - G 91 -7.7 -5.14563 | CTTGTCATCAAAAAA TGCCA GTT TGGCA CCACCCTCAAGGTTT TERM 3391 2629059 - 2629071 + g 75 -4.8 -4.81249 | GCCGCCTCCCGAGGG GCTG ACATC CAGC TTTTTAAATTTACCC TERM 3392 2629513 - 2629502 - G 83 -5.8 -5.0133 | opp_overlap 2629502, overlap 2629503 CATCGGGGTAAAAAA TCGG CGCG CCGA AACGGTCGCCACCGG fecR 2631682 - 2630684 - | transmembrane sensor CJA_2294 2632207 - 2631689 - | RNA polymerase sigma factor, sigma-70 family CJA_2295 2634761 - 2632326 - | TonB-dependent receptor protein TERM 3393 2632534 - 2632570 + g 70 -10.9 -2.70946 | opp_overlap 2632547, overlap 2632530 2632533 2632532 TCCTTGTATTTCTTA CCGGTGTAATACATACC GCC GGTAAGTGTTAGGCCGG GTATTTGTGCAACCG TERM 3394 2633757 - 2633746 - G 77 -3 -5.16237 | AATTGCAGTAAAAAA TCTT TGGT AAGA TTCCAATCCAGTGCA TERM 3395 2634328 - 2634364 + g 77 -12.3 -2.77029 | overlap 2634327 2634363 GTTGCTCTATAGCCT TCAGCACTGGTGCCG GTATGGA TGGCACCGGCGCTGA CTTTAACAGTCTTTA CJA_2296 2635858 - 2634869 - | transmembrane sensor fecI 2636357 - 2635845 - | Probable fecI Specialized sigma subunits of RNA CJA_2298 2638812 - 2636554 - | TonB-dependent receptor protein TERM 3396 2638375 - 2638408 + g 82 -11.7 -3.54771 | opp_overlap 2638381, overlap 2638378 2638381 ATACGAGCGTTGTAC CGAAAAGCCGCGCAT CATG ATGCGCGGCTGGTTG TTCTCATGTTGTGCC TERM 3397 2638378 - 2638405 + g 81 -9.8 -3.89893 | opp_overlap 2638381, overlap 2638375 2638381 CGAGCGTTGTACCGA AAAGCCGCGCAT CATG ATGCGCGGCTGG TTGTTCTCATGTTGT TERM 3398 2638381 - 2638402 + g 95 -15.9 -3.00404 | opp_overlap 2638381, overlap 2638378 2638375 GCGTTGTACCGAAAA GCCGCGCAT CATG ATGCGCGGC TGGTTGTTCTCATGT TERM 3399 2638402 - 2638381 - G 100 -15.9 -4.18018 | opp_overlap 2638381 2638378 2638375 GCGTTGTACCGAAAA GCCGCGCAT CATG ATGCGCGGC TGGTTGTTCTCATGT TERM 3400 2638646 - 2638657 + g 77 -7.2 -4.56775 | overlap 2638649 GTTTTCAAGCGCGCT GCCG CTTC CGGC TTTTTCCCGGCGGCT fagA 2639054 - 2639422 + | fagA protein fumC 2639477 - 2640886 + | fumarate hydratase, class II TERM 3401 2640919 - 2640950 + T 74 -10.2 -3.14468 | CAGTGCTAGAGTGGT ATCAGGTGTCTTTC TAGC GAAAGGCGCCTGAA TTAACTGTGCTGAAC TERM 3402 2641021 - 2640998 - T 75 -3 -5.25803 | opp_overlap 2640998, overlap 2641013 AACTCCTATAAAAAA TCCCTAAGGC ATAC ACCAAAGGGA TTTTTTGGCAAGAAA TERM 3403 2640998 - 2641021 + T 70 -2.3 -5.00616 | opp_overlap 2640998 2641013 AACTCCTATAAAAAA TCCCTAAGG CATACA CCAAAGGGA TTTTTTGGCAAGAAA CJA_2301 2643320 - 2641056 - | Ferric-pseudobactin 358 receptor precursor TERM 3404 2642616 - 2642599 - G 81 -4.7 -5.09895 | opp_overlap 2642599 2642601, overlap 2642600 2642601 TAGGCACCTAAAAAA CGGCCGC GGAC ACTGCCG CTGTCATTCAATGCA TERM 3405 2643290 - 2643279 - G 76 -3.6 -4.96646 | overlap 2643281 GTACATAATGAAAAA GCGC TCGA ACGC GAGGAGACTAGAAAG CJA_2302 2644496 - 2643567 - | transcriptional regulator, LysR family TERM 3406 2644205 - 2644195 - G 75 -6.8 -4.34402 | TGGCTCACACCAAAA CTGG GCG CCAG ACTCACCTTGAGAAC CJA_2303 2644615 - 2645379 + | oxidoreductase, short chain dehydrogenase/reductase family TERM 3407 2645409 - 2645391 - f 79 -9.6 -3.65754 | ATAAATCATTGTAAA GAGAACCA AGC CGGTTCTC TCCCTGTTGCAACCT TERM 3408 2645867 - 2645897 + G 72 -4.5 -4.60797 | overlap 2645870 GAATTGCTGGCCGCC GACCCCGGCGTCC AGGGC GGGCAACGGGTTC TTTTCTATGTGGGAG CJA_2304 2645450 - 2646061 + | putative polyketide synthase CJA_2305 2646079 - 2646849 + | hypothetical protein CJA_2306 2646907 - 2647008 + | hypothetical protein TERM 3409 2647450 - 2647436 - T 70 -10 -3.02511 | CTGATTGGGTTAATA TCCGGT ATG ACCGGA ACAGGCGGGGGTATT TERM 3410 2647533 - 2647517 - T 86 -11.5 -3.6581 | opp_overlap 2647516, overlap 2647515 AGCATGCGCAAAACA GCCGCCG TAA CAGCGGC CTATAATCTCTTGAA CJA_2309 2648175 - 2647855 - | hypothetical protein CJA_2310 2649859 - 2648168 - | PepSY domain protein TERM 3411 2648313 - 2648299 - G 76 -12.8 -2.68775 | overlap 2648295 GCAGTACCAAATCCA GGCCGG CTA CCGGCC AATAACCCTCACCCA CJA_2311 2650199 - 2649870 - | putative iron uptake protein TERM 3412 2650017 - 2650002 - G 95 -6.8 -5.20333 | CAGGTACAACAAAAA GCCCAG CATG CTGGAC AGGTGCTCAGCATCA TERM 3413 2651449 - 2651439 - g 70 -6.8 -4.08945 | overlap 2651428 ACGACCTGGGCAAAA CCCT GGC AGGG GCAAACTGTACCTGG CJA_2312 2650409 - 2652616 + | ferrisiderophore receptor-like protein CJA_2313 2654574 - 2652670 - | ABC-transport protein, ATP-binding component TERM 3414 2653004 - 2653022 + g 79 -10.2 -3.73775 | overlap 2653005 ATCGACAGGTTGCGA CCGCGCTG GCC CAGCGGGG TTTGGTACCCCTGGG TERM 3415 2654311 - 2654257 - G 100 -18.6 -3.28924 | opp_overlap 2654258 2654275 CAGCGCTGTGGATAA TGGCAGCACTGTGGATAGTGCAGCGG TTT CCGCCGCATTATCCACTACGCCGCGA ATTGCCAGAGGGATT TERM 3416 2654275 - 2654293 + g 72 -10.2 -3.32844 | opp_overlap 2654257, overlap 2654258 CAGCACTGTGGATAG TGCAGCGG TTT CCGCCGCA TTATCCACTACGCCG CJA_2314 2656454 - 2654571 - | ABC-transport protein, ATP-binding component CJA_2315 2657874 - 2656501 - | xenobiotic compound monooxygenase, DszA family, A subunit TERM 3417 2657918 - 2657880 - R 85 -3.9 -5.52986 | gap 1, opp_overlap 2657888, overlap 2657887 ATCTCAGCAAAAAAA TAATTTACGGGGAGAGGG ACAA CCCT-TCCCCCTCGATTA AACCGGGTTATTAAC TERM 3418 2657888 - 2657911 + r 70 -10.2 -2.52543 | opp_overlap 2657887 2657880 AAAAAAATAATTTAC GGGGAGAGGG ACAA CCCTTCCCCC TCGATTAAACCGGGT CJA_2316 2658594 - 2657929 - | hypothetical protein CJA_2317 2659717 - 2658650 - | putative dibenzothiophene desulfurization enzyme B TERM 3419 2658686 - 2658697 + g 70 -4.4 -4.57569 | ACGCGCAGCTTTGCG CTCT TCAT AGAG TTTTTGCGCACGTGC TERM 3420 2659809 - 2659787 - R 79 -4.2 -5.26316 | CTATGCCAGAAAAAA TTCCAGTA TCAATTG CACTGGAA AAATCGCAGGGAATT TERM 3421 2660014 - 2660004 - R 75 -2.6 -5.23396 | AACAATCAACAAAAA TAAA ATG TTTA AAAAGGCACAGCTAT CJA_2318 2660116 - 2660012 - | hypothetical protein TERM 3422 2660044 - 2660058 + g 93 -8.6 -4.83615 | opp_overlap 2660043 2660053 TTTTTGCTAACAACG CAACAG CAA CTGTTG TTTTTATAACAACTG TERM 3423 2660816 - 2660761 - gH 77 -10.5 -3.38812 | overlap 2660759 2660763 2660809 TTTGTCGCAACAACA GATCGACGCCCAGTCCTCCCTGGTA GCGCAA TACCAGGGAACAGTGAACGCCGATG AAGGCGCCCTGGCCC TERM 3424 2660814 - 2660763 - gH 85 -13.1 -3.26444 | overlap 2660759 2660761 2660809 TGTCGCAACAACAGA TCGACGCCCAGTCCTCCCTGGTA GCGCAA TACCAGGGAACAGTGAACGCCGA TGAAGGCGCCCTGGC CJA_2319 2660288 - 2661088 + | HlyD family secretion protein CJA_2320 2661057 - 2661260 + | desulfurizing enzyme TERM 3425 2662002 - 2661987 - g 85 -3.3 -5.32944 | overlap 2661988 2661989 2661991 TCGACAAGGAAAAAA TTGAG GTCGCG CTCAA GGTCAGGGCCACCTC TERM 3426 2662086 - 2662064 - g 79 -4.1 -5.04249 | gap 1 CTGGTAAAAAATAAA TCCCTGAGCA AGGA TGCAC-GGGA GTTCGAGGTCGCCCC CJA_2322 2661272 - 2662378 + | alkanesulfonate monooxygenase atsB 2663175 - 2662375 - | AtsB CJA_2323 2664047 - 2663193 - | AtsB TERM 3427 2663849 - 2663836 - G 72 -4.5 -4.65916 | overlap 2663837 GCTAGCTCAACAAAA CTGGC CCAC ACCAG GGCGGGCGACGGCAA TERM 3428 2663930 - 2663918 - G 70 -4.7 -4.45485 | overlap 2663919 ACCACAGCCATAAAA GCGCC AGG GGCGA TATCCAGGCGGCCAG CJA_2324 2665147 - 2664044 - | putative ABC transporter, substrate binding protein TERM 3429 2664567 - 2664533 - G 79 -3.5 -5.16572 | gap 1, overlap 2664535 ACTCAAGGTAAAAAA GC-CATCGACATTGCC GGCA GACACTGCCGCTGCGC CGGCCTGGGGATTGA CJA_2325 2665445 - 2665341 - | hypothetical protein TERM 3430 2665439 - 2665457 + g 72 -5.3 -4.56597 | CCCGCTGTTGCATTA CAAGCAC ATGCA GTGTTTG TTTTTAAACACAGGC CJA_2326 2665588 - 2665683 + | hypothetical protein tonB-2 2665720 - 2666499 + | tonB protein TERM 3431 2666885 - 2666875 - g 70 -6.8 -4.03204 | overlap 2666877 2666878 CAGCAAATCCAGAAA GAGC GCC GCTC ACTGGAAAGCGGCCT exbB1 2666548 - 2667279 + | ExbB TERM 3432 2667359 - 2667329 - g 73 -12 -2.80056 | opp_overlap 2667329 2667328 2667332, overlap 2667328 AGTATTGAGTGAAAT CAACATCACACCCA TGG TGGATGTTATGTTG GTATTGCTGGTGGTA exbD1 2667279 - 2667698 + | ExbD TERM 3433 2667717 - 2667752 + F 100 -15.6 -4.41047 | opp_overlap 2667717 2667726, overlap 2667726 TTTCTGATCGGAAAA GACCAAAAAGACGGTG AAAA TACCGCCTTTTTGGTC TTTTAATTCCACCCT TERM 3434 2667752 - 2667717 - f 100 -17.1 -4.13767 | opp_overlap 2667717 2667726, overlap 2667726 TTTCTGATCGGAAAA GACCAAAAAGACGGT GAAAAT ACCGCCTTTTTGGTC TTTTAATTCCACCCT TERM 3435 2667743 - 2667726 - f 78 -4.8 -4.98616 | opp_overlap 2667717 2667726, overlap 2667717 GGAAAAGACCAAAAA GACGGT GAAAAT ACCGCC TTTTTGGTCTTTTAA TERM 3436 2667726 - 2667743 + F 74 -3.3 -4.98616 | opp_overlap 2667726 2667717, overlap 2667717 GGAAAAGACCAAAAA GACGGTG AAAA TACCGCC TTTTTGGTCTTTTAA CJA_2330 2667730 - 2668311 + | hypothetical protein TERM 3437 2668373 - 2668357 - T 100 -9.4 -5.50499 | CCATAGCTAAAAAAA GGGAGC ACCAG GCTCCC CGAAACATTACGTGG CJA_2331 2669458 - 2668394 - | putative dibenzothiophene desulfurization enzyme B TERM 3438 2668501 - 2668485 - G 72 -6.5 -4.37092 | AGGTTGGGGATAAAA TTCCAGC GAT GCAGGAA GCTGATAAAATCCTG TERM 3439 2669072 - 2669052 - G 74 -9.7 -3.55563 | AGCGCATTTTCCAAA CCGCGCA GTGCCTG TGCGCGG GAGAAATCAATTTGT sfnR 2670826 - 2669651 - | sigma54-dependent transcriptional regulator TERM 3440 2669898 - 2669883 - G 70 -6 -4.15044 | opp_overlap 2669891 CCCTGCTTGAATAAA CGGCGC AGTT GCGTCG CAATAATATCCAGGG TERM 3441 2670215 - 2670195 - G 81 -4.7 -5.03145 | TAATTCCGTAAAAAA TATTCAGCC AGG GGCAAAATA TCACCAGGACGCTCA TERM 3442 2670753 - 2670742 - G 70 -4.4 -4.57353 | CGGGATCAGAGAAAA CCAA TGCC TTGG CCCTGACAGACAACG TERM 3443 2671905 - 2671870 - g 70 -11.2 -2.78996 | gap 1, opp_overlap 2671878 2671880 2671890, overlap 2671869 2671892 GACGGTTACCTAAAG CTGGACCAGGGCAGCCA TGA CAGC-ACCCTGATCCAG GGTGCTGTTGGTGGC TERM 3444 2671878 - 2671924 + G 85 -11.7 -3.61398 | opp_overlap 2671870 2671869 2671892, overlap 2671880 2671890 CCTAAAGCTGGACCA GGGCAGCCA-TGACAGCACCCTG ATC CAGGGTGCTGTTGGTGGC-GCTA TTATTGAAGACAGCC TERM 3445 2671880 - 2671922 + G 100 -16.5 -3.38812 | opp_overlap 2671870 2671869 2671892, overlap 2671878 2671890 TAAAGCTGGACCAGG GCAGCCA-TGACAGCACCCTG ATC CAGGGTGCTGTTGGTGGC-GC TATTATTGAAGACAG TERM 3446 2671890 - 2671912 + G 100 -17.8 -3.16668 | opp_overlap 2671870 2671869 2671892, overlap 2671880 2671878 CCAGGGCAGCCATGA CAGCACCCTG ATC CAGGGTGCTG TTGGTGGCGCTATTA TERM 3447 2671910 - 2671892 - g 90 -14.6 -2.80935 | opp_overlap 2671890 2671880 2671878, overlap 2671870 2671869 AGGGCAGCCATGACA GCACCCTG ATC CAGGGTGC TGTTGGTGGCGCTAT TERM 3448 2673248 - 2673265 + G 81 -9.1 -4.09923 | overlap 2673225 ATCGCTTCGTGCGCT CGCCGGA ATTC TCCGGTG TTCTTTCATTGGATT CJA_2333 2671264 - 2673588 + | putative tonB-dependent receptor protein TERM 3449 2673633 - 2673599 - f 81 -5.1 -5.09426 | gap 1, opp_overlap 2673631, overlap 2673601 TCTAAGCGGAAAAAA TACAGGAGGATGGATT ATCC AATCTA-CCTCCTGGA CACAGGCCTGTTGCC TERM 3450 2673631 - 2673601 - f 73 -7.7 -4.17355 | gap 1, overlap 2673599 TAAGCGGAAAAAATA CAGGAGGATGGATT ATCC AATCTA-CCTCCTG GACACAGGCCTGTTG TERM 3451 2674111 - 2674133 + G 81 -6.9 -4.61147 | opp_overlap 2674101, overlap 2674112 TCCAACTGGATCACT CCCGCGCAG CGGCT TTGCGCGGC TTTTGTGTGATGTTG TERM 3452 2674112 - 2674132 + G 72 -10.4 -3.35604 | opp_overlap 2674101, overlap 2674111 CCAACTGGATCACTC CCGCGCAG CGGCT TTGCGCGG CTTTTGTGTGATGTT CJA_2334 2673723 - 2674841 + | putative dibenzothiophene desulfurization enzyme B TERM 3453 2674843 - 2674871 + T 82 -11.9 -3.43676 | opp_overlap 2674843 2674846 2674850, overlap 2674846 2674850 GATTGATCCATTAAA CAATAAAGCCC TTTTACC GGGCTTTATTG TTATCCCTTGGTCGA TERM 3454 2674871 - 2674843 - T 93 -11.9 -3.767 | opp_overlap 2674843 2674846 2674850, overlap 2674846 2674850 GATTGATCCATTAAA CAATAAAGCCC TTTTACC GGGCTTTATTG TTATCCCTTGGTCGA TERM 3455 2674868 - 2674846 - T 71 -7.8 -4.015 | opp_overlap 2674846 2674843 2674850, overlap 2674843 2674850 TGATCCATTAAACAA TAAAGCCC TTTTACC GGGCTTTA TTGTTATCCCTTGGT TERM 3456 2674846 - 2674868 + T 71 -7.8 -3.85209 | opp_overlap 2674843 2674846 2674850, overlap 2674843 2674850 TGATCCATTAAACAA TAAAGCCC TTTTACC GGGCTTTA TTGTTATCCCTTGGT CJA_2335 2676070 - 2674892 - | putative alkanesulfonate monooxygenase TERM 3457 2675190 - 2675177 - G 71 -9.5 -3.53012 | CTGGCTGGGGCGAAA GCCGC TTTG GCGGC TGGCACCGACAGAAT TERM 3458 2675809 - 2675792 - G 82 -9.1 -4.29391 | gap 1 AATCATAAAACGAAA GCGACGGG TCT CCCG-CGC CAGGAACGACGAAAT CJA_2336 2677156 - 2676092 - | hypothetical protein CJA_2337 2678489 - 2677389 - | putative dibenzothiophene desulfurization enzyme B TERM 3459 2678541 - 2678527 - H 100 -11.4 -5.07567 | opp_overlap 2678527 GGATATCGTAAAAAA CTGCCG ATA CGGCAG TGTTCAATAAACACA TERM 3460 2678527 - 2678541 + H 75 -11.4 -3.08679 | opp_overlap 2678527 GGATATCGTAAAAAA CTGCCG ATA CGGCAG TGTTCAATAAACACA TERM 3461 2678696 - 2678656 - H 100 -8.3 -5.09762 | overlap 2678657 2678658 2678691 ACCCCAATATAAAAA TCCGTGCGTCCTGCTGTGC GAA ACACAACAGAACACAGGCA TGGCGTGTTAACAAA TERM 3462 2678694 - 2678657 - H 79 -10.7 -3.64773 | gap 1, overlap 2678656 2678658 2678691 CCCCAATATAAAAAT CCGTGCGTCCTGCTGTGC GAA ACACAACAGAACACA-GG CATGGCGTGTTAACA TERM 3463 2678694 - 2678658 - H 74 -10.9 -2.78141 | overlap 2678657 2678656 2678691 CCCAATATAAAAATC CGTGCGTCCTGCTGTGC GAA ACACAACAGAACACAGG CATGGCGTGTTAACA CJA_2338 2678856 - 2678963 + | hypothetical protein CJA_2339 2678989 - 2679096 + | hypothetical protein CJA_2340 2679089 - 2680873 + | putative transport protein (ABC superfamily, atp_bind and membrane) TERM 3464 2681781 - 2681791 + G 71 -3.2 -4.87008 | ATTACACTGGGCCAA TTGG CTG CCAG TTTATTTTATGTATT TERM 3465 2681871 - 2681883 + G 70 -5.5 -4.32034 | GCCAATGGCTCTGCG TGCGC CCA GCGTA TTTTCCTGCTGCTGG CJA_2341 2680863 - 2682788 + | ABC transporter protein, ATP-binding component TERM 3466 2682783 - 2682771 - T 78 -4.7 -4.99861 | opp_overlap 2682771 GACCAACCAGAAAAA CAGGC AAT GCCGG TTTAAATGGCGTCCA TERM 3467 2682824 - 2682803 - T 100 -14.5 -4.57341 | opp_overlap 2682803 AATGGCGTCCAAAAA TAACCCGGC AATT GCCGGGTTA TTTTTAGTATCAAGC TERM 3468 2682803 - 2682824 + T 100 -14.5 -4.8048 | opp_overlap 2682803 AATGGCGTCCAAAAA TAACCCGGC AATT GCCGGGTTA TTTTTAGTATCAAGC TERM 3469 2682902 - 2682885 - T 73 -11.3 -2.6911 | opp_overlap 2682884, overlap 2682884 2682882 2682880 ACAACTAAAACACAG CCACCGA CACT TCGGTGG ACTTAATCAGGGCAA CJA_2342 2683089 - 2682874 - | molybdenum-pterin binding domain protein CJA_2343 2683949 - 2683113 - | AtsC msuE 2684521 - 2683949 - | FMN reductase CJA_2345 2684704 - 2685756 + | Rhodanese-like domain protein TERM 3470 2685804 - 2685787 - f 95 -12.7 -4.08144 | opp_overlap 2685787 GCTATCAACCATAAA GCTCCCC CATC GGGGAGC TTTTTATTTAAGAAG TERM 3471 2685787 - 2685804 + F 100 -12.7 -5.27335 | opp_overlap 2685787 GCTATCAACCATAAA GCTCCCC CATC GGGGAGC TTTTTATTTAAGAAG CJA_2346 2685827 - 2687005 + | hypothetical protein CJA_2347 2687892 - 2687059 - | sulfate ABC transporter, permease protein CysW CJA_2348 2688746 - 2687898 - | sulfate ABC transporter, permease protein CysT TERM 3472 2687935 - 2687925 - G 72 -4.6 -4.60797 | opp_overlap 2687925 GGGGGAGAGATAAAA CCGC TGT GCGA TTTGCAGCAATAACA TERM 3473 2688668 - 2688688 + g 100 -15.5 -3.15544 | opp_overlap 2688668 GGCTCAAATAAAAAA CACTCAGCC CTA GGCTGAGTG TTAATCCGGGTAAAA TERM 3474 2688688 - 2688668 - G 100 -15.5 -5.63517 | opp_overlap 2688668 GGCTCAAATAAAAAA CACTCAGCC CTA GGCTGAGTG TTAATCCGGGTAAAA cysP 2689793 - 2688780 - | thiosulfate ABC transporter, periplasmic thiosulfate-binding protein CJA_2350 2691099 - 2689927 - | tranpsorter, major facilitator family subfamily CJA_2351 2691184 - 2691089 - | hypothetical protein TERM 3475 2691204 - 2691182 - G 100 -12 -5.00616 | TGCTTGCGCAAAAAA CAAGGGCGCC TAA AGCGCCCTTA CAAAAATAACACTGA CJA_2352 2691866 - 2691228 - | antioxidant protein LsfA CJA_2354 2692043 - 2693044 + | Domain of unknown function domain protein CJA_2353 2693148 - 2693023 - | hypothetical protein TERM 3476 2693102 - 2693092 - G 72 -6.8 -4.2704 | GGTATCATCAACAAA CACC AAT GGTG CAACCTGCATGAGCA CJA_2355 2693882 - 2693145 - | hypothetical protein TERM 3477 2693923 - 2693913 - H 90 -6.8 -5.42862 | opp_overlap 2693913 ATATTTTCAAAAAAA GCCA ATT TGGC TTGATAGAAAAAGTC TERM 3478 2693954 - 2693936 - H 100 -9.6 -4.96848 | GGCTTGATAGAAAAA GTCGTAGC CAA ACTACGAC AACCGCAAATAAGTC TERM 3479 2695512 - 2695491 - g 73 -9.3 -3.57144 | TGCTGGATTTGGAAA CCCGCGAGC GCGA GCGCACGGG CATCCCTACCCTGAA TERM 3480 2696247 - 2696276 + G 77 -12.1 -2.71712 | overlap 2696246 CCAGCACTTTCGACG GCTTGTCACTGGC CTGG GCCTGTGCCAAGC ATTTGGCCGAAAAAG mutS 2694128 - 2696755 + | DNA mismatch repair protein MutS fdxA 2696918 - 2697241 + | 7-Fe ferredoxin TERM 3481 2697220 - 2697236 + F 78 -12.3 -2.51133 | overlap 2697219 TGGTGTCCCTGGCAA GCTCCAG CAC CTGGAGC GTTAATAGGTCGCTC TERM 3482 2697293 - 2697274 - f 72 -9.2 -3.57971 | opp_overlap 2697276, overlap 2697276 ATAGCGATGCCCAAA GACCGCGC ATAT GCGCGGTT TTTTATTGCCGGCTA TERM 3483 2697276 - 2697291 + F 100 -11.8 -5.4505 | opp_overlap 2697274 2697276 AGCGATGCCCAAAGA CCGCGC ATAT GCGCGG TTTTTTATTGCCGGC TERM 3484 2697291 - 2697276 - f 82 -11.8 -3.36694 | opp_overlap 2697276, overlap 2697274 AGCGATGCCCAAAGA CCGCGC ATAT GCGCGG TTTTTTATTGCCGGC CJA_2358 2697516 - 2697824 + | hypothetical protein TERM 3485 2697862 - 2697834 - T 90 -10.3 -4.29073 | overlap 2697835 CAATAACCCAATAAA CGCCATACCGC TCGCAAC GCGGTATGGCC AATCGATGGCCTAGA TERM 3486 2697861 - 2697835 - T 86 -13.8 -3.16359 | overlap 2697834 AATAACCCAATAAAC GCCATACCGC TCGCAAC GCGGTATGGC CAATCGATGGCCTAG vacJ 2698733 - 2697873 - | vacJ lipoprotein TERM 3487 2699189 - 2699164 - g 77 -8.3 -4.02051 | CACCAACTCAAATAA CACCACCAATA ACAA CACTGGCGGTG GAAATGGCACGACCA TERM 3488 2699465 - 2699475 + G 72 -6.8 -4.1891 | overlap 2699460 ACTATCGCTGCCGGT GCCA AAC TGGC TTTCTCTTCACCAGA TERM 3489 2700199 - 2700209 + G 71 -2.4 -4.89521 | CGAAGGTCCTCTGTA CCGC GAA GGGG TTTTCTTTGAAATGT CJA_2360 2699054 - 2700739 + | putative lipoprotein TERM 3490 2700797 - 2700774 - f 86 -13.8 -3.2048 | opp_overlap 2700774, overlap 2700766 2700765 TGTAAACGGCATCAA CAGGGGCGCC TATG GGCGCCTCTG TTCTTAAGGCCAACA TERM 3491 2700774 - 2700797 + F 100 -16 -3.61398 | opp_overlap 2700766 2700774 2700765 TGTAAACGGCATCAA CAGGGGCGCC TATG GGCGCCTCTG TTCTTAAGGCCAACA TERM 3492 2703439 - 2703423 - g 79 -3.7 -5.08255 | overlap 2703404 ACTGCCAAAATAAAA TTAGGCA ACC TGCTTAA CGAAAAACGTACCTT CJA_2361 2700813 - 2703545 + | putative TonB-dependent receptor TERM 3493 2703573 - 2703589 + F 100 -9.4 -5.2696 | opp_overlap 2703566 2703573, overlap 2703566 ATAAGAAACCCCAAA GCGGCT CTTGT AGCCGC TTTTTTACATTTTCA TERM 3494 2703589 - 2703573 - f 76 -9.4 -3.77136 | opp_overlap 2703566 2703573, overlap 2703566 ATAAGAAACCCCAAA GCGGCT CTTGT AGCCGC TTTTTTACATTTTCA CJA_2362 2703842 - 2704567 + | hypothetical protein TERM 3495 2704613 - 2704584 - T 100 -16.7 -3.16881 | opp_overlap 2704591, overlap 2704591 CACCGATTTCAGCAA TAAAAAAGCCGCA TAAC TGCGGCTTTTTTA TTGCGCCTGACCCGT TERM 3496 2704606 - 2704591 - T 100 -10.4 -5.5112 | opp_overlap 2704591, overlap 2704584 TTCAGCAATAAAAAA GCCGCA TAAC TGCGGC TTTTTTATTGCGCCT TERM 3497 2704591 - 2704606 + T 100 -10.4 -5.45652 | opp_overlap 2704591 2704584 TTCAGCAATAAAAAA GCCGCA TAAC TGCGGC TTTTTTATTGCGCCT CJA_2363 2705139 - 2704648 - | hypothetical protein TERM 3498 2704854 - 2704871 + g 75 -6.9 -4.30809 | overlap 2704836 2704850 CAACAGCGGGCGCTG CCTCGGC TTTC GCCAAGG TTTTAGTGGATGTTC TERM 3499 2705269 - 2705246 - R 93 -15.4 -2.90496 | opp_overlap 2705246 2705250, overlap 2705250 TCCGGCCCCAAAGCA CAAAGGGTGC CGAA GCACCCTTTG TTATCCTGACCAGGC TERM 3500 2705246 - 2705269 + r 100 -15.4 -3.40403 | opp_overlap 2705246 2705250, overlap 2705250 TCCGGCCCCAAAGCA CAAAGGGTGC CGAA GCACCCTTTG TTATCCTGACCAGGC TERM 3501 2705265 - 2705250 - R 87 -10.4 -4.13654 | opp_overlap 2705246 2705250, overlap 2705246 GCCCCAAAGCACAAA GGGTGC CGAA GCACCC TTTGTTATCCTGACC TERM 3502 2705250 - 2705265 + r 90 -10.4 -4.35483 | opp_overlap 2705250 2705246, overlap 2705246 GCCCCAAAGCACAAA GGGTGC CGAA GCACCC TTTGTTATCCTGACC ifcO 2706218 - 2705289 - | porin signal peptide protein CJA_2365 2707212 - 2706466 - | hypothetical protein TERM 3503 2706962 - 2706941 - G 100 -13.1 -3.76224 | opp_overlap 2706941 2706944, overlap 2706944 CGCTCATGGAGTAAA TAAGCCAGG AACT CCTGGCTTA TTTCCAAAAAATAGG TERM 3504 2706941 - 2706962 + g 90 -13.1 -3.53811 | opp_overlap 2706941 2706944, overlap 2706944 CGCTCATGGAGTAAA TAAGCCAGG AACT CCTGGCTTA TTTCCAAAAAATAGG TERM 3505 2706944 - 2706959 + g 81 -10.4 -3.90922 | opp_overlap 2706944 2706941, overlap 2706941 TCATGGAGTAAATAA GCCAGG AACT CCTGGC TTATTTCCAAAAAAT TERM 3506 2706959 - 2706944 - G 83 -10.4 -4.015 | opp_overlap 2706941 2706944, overlap 2706941 TCATGGAGTAAATAA GCCAGG AACT CCTGGC TTATTTCCAAAAAAT TERM 3507 2707013 - 2706974 - G 77 -2.9 -5.03314 | gap 2, overlap 2706976 CTTATTTCCAAAAAA TA-GGGGGTTTGT-GCCCG GTGC CGGGCAACAAAGCCTCGCA CCAGCGCCAGCCAGC TERM 3508 2707010 - 2706976 - G 81 -9.3 -4.14633 | gap 1, overlap 2706974 TATTTCCAAAAAATA GGGGGTTTGT-GCCCG GTGC CGGGCAACAAAGCCTC GCACCAGCGCCAGCC CJA_2366 2708087 - 2707209 - | hypothetical protein TERM 3509 2708058 - 2708029 - G 78 -8.5 -4.20783 | overlap 2708030 AGTGGATGTAATAAA CTCCGGCGCAAGC CTAA ACCTGCACCGGAT ACCTCTGCGGTGAAA TERM 3510 2708057 - 2708030 - G 75 -12 -3.11988 | overlap 2708029 GTGGATGTAATAAAC TCCGGCGCAAGC CTAA ACCTGCACCGGA TACCTCTGCGGTGAA TERM 3511 2708364 - 2708340 - R 90 -12.9 -3.53811 | TGTATTGGCGGTAAA GCTGGCATCTG CAG CAGATGCCATC GGGGAAAGTACCGCA hrpA 2712453 - 2708512 - | ATP-dependent helicase HrpA TERM 3512 2708623 - 2708653 + g 70 -9.7 -3.17212 | opp_overlap 2708623, overlap 2708630 CAACTCCTCAACCCA CCAGCGGTAGTCC ATCAG GGACGATTGCTGG TTGATCACATAATCG TERM 3513 2708908 - 2708922 + g 74 -2 -5.0538 | overlap 2708910 CAACAACATATTCTT TTGCTG TTT CAGCTG TTTTTTAAGGTCGAC TERM 3514 2708910 - 2708920 + g 72 -6.8 -4.15748 | overlap 2708908 ACAACATATTCTTTT GCTG TTT CAGC TGTTTTTTAAGGTCG TERM 3515 2712484 - 2712458 - R 79 -11.6 -3.254 | overlap 2712456 CACTCACTCATAACA GATGCCCGCC TTTCAGG GGCAGGCATC ATAGCAAAAATTCAC CJA_2368 2713241 - 2712504 - | putative lipoprotein TERM 3516 2713335 - 2713323 - R 84 -7.7 -4.84359 | TTATGCCGATAAAAA TCCTG TGA CAGGA TAAAAACCGGGGGCA TERM 3517 2713367 - 2713342 - R 100 -16.9 -4.95155 | GTGACAGGATAAAAA CCGGGGGCATC TCTC AATGCCCCCGG TGCGCAGATTATTCG CJA_2369 2716492 - 2713376 - | RND transporter, Hydrophobe/Amphiphile Efflux family TERM 3518 2714695 - 2714679 - G 74 -7.9 -4.14472 | overlap 2714681 TCAATAGCGCCAAAA GAGCGTG GAG CACGCAC CATCAGGCGAGTCAC TERM 3519 2714693 - 2714681 - G 73 -9.1 -3.66658 | overlap 2714679 AATAGCGCCAAAAGA GCGTG GAG CACGC ACCATCAGGCGAGTC TERM 3520 2714730 - 2714740 + g 70 -6.8 -4.02132 | opp_overlap 2714729 CCGCTATCCACATAG CGCA TCA TGCG TTTCTCAATTTCCGC TERM 3521 2714910 - 2714899 - G 71 -3 -4.84359 | opp_overlap 2714903, overlap 2714903 2714905 2714906 CCATGGCGACAAAAA CAAT CACC ATTG GCGTTTTATGGGTTA CJA_2370 2717611 - 2716505 - | RND efflux membrane fusion protein CJA_2371 2717839 - 2717711 - | hypothetical protein TERM 3522 2717749 - 2717771 + g 83 -6.2 -4.91109 | overlap 2717753 GCGTTTCGCCTTCTT TCAGGTGGCA GCC TGCCGCTGGA TTTTTCTGGTACGAC msrB 2718294 - 2717872 - | methionine-R-sulfoxide reductase TERM 3523 2719273 - 2719261 - g 71 -10.5 -2.87132 | TGTTTGCCGTACAGA CCGCC CTG GGCGG CTATCAAAGTATTAA CJA_2373 2718399 - 2719613 + | aminotransferase, classes I and II TERM 3524 2719624 - 2719654 + T 95 -12.1 -4.06384 | gap 1, opp_overlap 2719631, overlap 2719631 AGTAATTATCACCTG CAAAAAA-GCCAGC ATCT GCTGGCTTTTTTTG TTTGTCCTATTCGGG TERM 3525 2719631 - 2719646 + T 100 -10.4 -6.02919 | opp_overlap 2719631, overlap 2719624 ATCACCTGCAAAAAA GCCAGC ATCT GCTGGC TTTTTTTGTTTGTCC TERM 3526 2719646 - 2719631 - T 100 -10.4 -5.03715 | opp_overlap 2719624 2719631 ATCACCTGCAAAAAA GCCAGC ATCT GCTGGC TTTTTTTGTTTGTCC CJA_2374 2720584 - 2719661 - | predicted SAM-dependent methyltransferase TERM 3527 2720247 - 2720231 - G 100 -7.9 -5.29782 | CATATCGAGAAAAAA GCCGGCA TTT TGCTGGC GAGCCAAATGCACAT CJA_2375 2721728 - 2720568 - | NAD(+)/NADH kinase TERM 3528 2721511 - 2721499 - G 74 -7.7 -4.08945 | opp_overlap 2721508, overlap 2721488 ATCACCGTGGCAAAA CCCAA GGC TTGGG CCACATCGGCGCCCA TERM 3529 2721558 - 2721548 - G 75 -6.8 -4.39696 | overlap 2721540 GCGCAAAGCAATAAA TCGC AAT GCGA TCGGCAAACGCAGTC pdxB 2722857 - 2721721 - | erythronate-4-phosphate dehydrogenase CJA_2377 2723093 - 2723791 + | hypothetical protein TERM 3530 2723832 - 2723817 - T 100 -11.8 -5.60993 | opp_overlap 2723817 TCCCCCATAAAAAAA CGCCGC AAAA GCGGCG TTTTTTTATGGTAAT TERM 3531 2723817 - 2723832 + T 100 -11.8 -5.67967 | opp_overlap 2723817 TCCCCCATAAAAAAA CGCCGC AAAA GCGGCG TTTTTTTATGGTAAT CJA_2378 2724303 - 2723857 - | hypothetical protein CJA_2379 2724645 - 2724412 - | SirA protein homolog CJA_2380 2724756 - 2725157 + | hypothetical protein CJA_2381 2726228 - 2725176 - | hypothetical protein CJA_2382 2726471 - 2726244 - | hypothetical protein CJA_2383 2726580 - 2727113 + | ACT domain protein CJA_2384 2727567 - 2727145 - | hypothetical protein TERM 3532 2727380 - 2727368 - G 86 -9.1 -4.29656 | opp_overlap 2727378 GACAAAACCCCAAAA GCCTG CAT CAGGC GAATCACCTTCATGC CJA_2385 2731442 - 2727585 - | MSHA biogenesis protein MshQ TERM 3533 2728845 - 2728893 + g 100 -15.1 -3.64822 | opp_overlap 2728832 2728852 AGGCGCGCCAGCGGC GACAAAACCGGCGGCAGCCCCGG GCG CCGAGGTTGCCCCCGGGTTAGCC TTTCCATCGAGCCCT TERM 3534 2728886 - 2728852 - G 100 -19.2 -4.37886 | opp_overlap 2728845 CCAGCGGCGACAAAA CCGGCGGCAGCCCCGG GCG CCGAGGTTGCCCCCGG GTTAGCCTTTCCATC TERM 3535 2729226 - 2729250 + g 93 -9.9 -4.45544 | GGTTCTGGTTCCTGT CACCCTCGCCT CGC AGGCGCCGGTG TTTTCGTTGGTGCGC TERM 3536 2729968 - 2729953 - G 70 -4 -4.66609 | CAGCGCACCGAAAAA GTATCG TTGC CAATAC CGGCAGGTCCCGGCG CJA_2386 2731919 - 2731443 - | putative MSHA biogenesis protein MshP TERM 3537 2731625 - 2731641 + g 86 -12.3 -3.55761 | opp_overlap 2731612 2731625 TACACTGGCAATTCA CCTGTGC AGA GCACAGG TTTAAGCCATCGATG TERM 3538 2731641 - 2731625 - G 76 -12.3 -2.53581 | opp_overlap 2731625, overlap 2731612 TACACTGGCAATTCA CCTGTGC AGA GCACAGG TTTAAGCCATCGATG TERM 3539 2731905 - 2731886 - G 70 -4.2 -4.66456 | opp_overlap 2731887, overlap 2731887 AAATAAAAATAGAAA GCGGGATT AAAA AACCCCGT TGGTATTTTCCCATC CJA_2387 2732739 - 2731939 - | hypothetical protein TERM 3540 2732363 - 2732351 - G 72 -5.5 -4.4727 | overlap 2732333 2732352 CCAATACTGACAAAA CTGGC ACT GCCAA ATTCAATCGCGTGTG mshD 2733203 - 2732739 - | MSHA pilin protein MshD CJA_2389 2733618 - 2733184 - | msha pilin protein mshc TERM 3541 2733473 - 2733494 + g 100 -15.9 -3.44146 | opp_overlap 2733473 TGCGCCAATGAAAAA GCCGCGATG ATGT CATCGCGGC TTCCTTGTACCCCAG TERM 3542 2733494 - 2733473 - G 100 -15.9 -4.8622 | opp_overlap 2733473 TGCGCCAATGAAAAA GCCGCGATG ATGT CATCGCGGC TTCCTTGTACCCCAG CJA_2390 2734142 - 2733645 - | hypothetical protein CJA_2391 2734595 - 2734233 - | hypothetical protein TERM 3543 2734358 - 2734395 + g 83 -9.7 -4.07885 | gap 1 CATGGTAAGAGTATG CCCCACGCTGCTCCG-GC TGT GCACTGAGCGGCGGCGGG TTTTGCAACAAGCTG CJA_2393 2734644 - 2734808 + | hypothetical protein mshG 2736019 - 2734799 - | MSHA biogenesis protein MshG mshE 2737751 - 2736036 - | MSHA biogenesis protein MshE TERM 3544 2737106 - 2737124 + g 70 -3.9 -4.72986 | gap 1, opp_overlap 2737094 2737092 2737108, overlap 2737106 2737108 ATACACCATCGATAC G-ATTGCG GATA CGCAATAC TTTTTCATCCGGCTC CJA_2395 2739211 - 2737769 - | putative MSHA biogenesis protein MshN TERM 3545 2738684 - 2738665 - G 82 -9.3 -4.19953 | opp_overlap 2738665 CAGCCAATTGCAAAA TCCCCTG CTGTGC CAGGGGA TTTGTTGCATCCAGG TERM 3546 2738665 - 2738684 + g 82 -9.3 -4.20516 | opp_overlap 2738665 CAGCCAATTGCAAAA TCCCCTG CTGTGC CAGGGGA TTTGTTGCATCCAGG TERM 3547 2739100 - 2739075 - G 72 -6.7 -4.25566 | overlap 2739066 2739076 2739091 AACAACCAGGGAAAA CCCGCAGGCCT GAAC AGGCCGGAGGA TTGCAACTCCGCCCG mshM 2740146 - 2739226 - | MSHA biogenesis protein MshM TERM 3548 2739284 - 2739259 - G 86 -10.5 -3.89501 | gap 1, overlap 2739261 CAATACCGGGATAAA CA-CCAGCGCAG CGG CTGCACTGGCTG CCAGGGCTGGCCACA TERM 3549 2739281 - 2739261 - G 90 -13.3 -3.53174 | overlap 2739259 ATACCGGGATAAACA CCAGCGCAG CGG CTGCACTGG CTGCCAGGGCTGGCC TERM 3550 2739312 - 2739334 + g 79 -4.7 -4.98531 | ACAACCAGTAATCGC GCCGGGCCA AAACC TGTCCCAGC TTTTTACTTTCGGCA TERM 3551 2739675 - 2739686 + g 87 -4.4 -5.22039 | CAAATAACACCACTT GCAA CAAC TTGC TTTTTTCAGTTTCCA TERM 3552 2739798 - 2739772 - G 72 -11.6 -2.52082 | opp_overlap 2739786 2739787, overlap 2739769 2739771 2739774 ATCAACCACCAACAC CACCTGGCGC TTTTGTT GCGCCAAGTG CACCAGGCGCAAATT mshL 2741930 - 2740194 - | MSHA biogenesis protein MshL TERM 3553 2741697 - 2741671 - G 79 -3.6 -5.16237 | overlap 2741673 AACCCCAGGAAAAAA TCCCGCGCGGAA ACA TTGTGCACGGAA ACATCAAAGCGCTCC CJA_2398 2742293 - 2741955 - | MSHA biogenesis protein MshK CJA_2399 2742966 - 2742286 - | putative MSHA biogenesis protein MshJ CJA_2400 2743634 - 2742963 - | MSHA biogenesis protein MshI TERM 3554 2743008 - 2743018 + g 74 -2.4 -5.03145 | CAATTCCAGCAAATG CTGC ACG GCCG TTTTTTCGGCACTTC CJA_2401 2744661 - 2743636 - | putative MSHA biogenesis protein MshI TERM 3555 2744800 - 2744823 + GH 77 -10.3 -3.33399 | opp_overlap 2744813 GGCAACATTATTCGC CTGGCAGCC AACACC GGTTGCCAG TTACATTTAATTGAA TERM 3556 2744894 - 2744867 - gH 87 -4.9 -5.22312 | ACTTAGATGAAAAAA GCGTAACCC GCGCCGGAAT GGATTACGC CGAAACCCAGGATGT TERM 3557 2745011 - 2745023 + GH 70 -5.5 -4.33582 | ACAGTGATGCACAGT TTGCC GCA GGCGA TTATTTATTGTTCGG TERM 3558 2745140 - 2745160 + GH 77 -8.9 -3.89614 | GCAGCATGAACCTGT CCAACGCGG TTG CCGTGATGG TTTATGAAGCTTGGC CJA_2402 2744740 - 2745204 + | RNA methyltransferase, TrmH family, group 2 CJA_2403 2745171 - 2745704 + | flavodoxin CJA_2404 2745770 - 2746294 + | flavodoxin CJA_2405 2746291 - 2748393 + | D-amino acid oxidase family protein TERM 3559 2748719 - 2748693 - g 73 -4.2 -4.74598 | opp_overlap 2748695, overlap 2748695 GAAATCGAAAACAAA GTGGCCACCGCC GTG GGCGATGCACTC CATTATGTGGAAGCG TERM 3560 2748894 - 2748869 - g 82 -3.2 -5.25735 | overlap 2748871 GGAAAAAACCAAAAA TACCAGCGCC GCAAAA GACACCGGCA AAAAATCACCCGCCA CJA_2407 2748453 - 2748932 + | hypothetical protein CJA_2406 2749540 - 2748929 - | hypothetical protein CJA_2408 2749574 - 2750374 + | glutaminyl-peptide cyclotransferase CJA_2409 2751212 - 2750400 - | oxidoreductase, short chain dehydrogenase/reductase family CJA_2410 2752034 - 2751252 - | enoyl-CoA hydratase/isomerase family protein TERM 3561 2751882 - 2751849 - G 83 -5.9 -5.00616 | overlap 2751851 GCCTGCGGTAAAAAA CTCGCGGGTACCGGT CAGT ACCAATACCCGTACG CCAACATCCTTGTCC TERM 3562 2752335 - 2752350 + G 74 -7.5 -4.14392 | CCGCCCTGATTGCAC CCGGC AAAAAA GCCGG TTTTGGCGATTACCA TERM 3563 2753206 - 2753171 - g 72 -4.5 -4.68593 | overlap 2753174 GTGATTATCCAAAAA CAGGGCGGCGGCTTC CTCTAT GCCACCACCGACCTG GCGGCCCTGCGCTAT TERM 3564 2753440 - 2753420 - g 77 -9.7 -3.57144 | opp_overlap 2753403, overlap 2753421 GGCGGCACCGTCAAA CTCGCCGAG TTA CTCAGCGAA GCAGTTGACCGTGCG TERM 3565 2753439 - 2753421 - g 70 -11 -2.74144 | opp_overlap 2753403, overlap 2753420 GCGGCACCGTCAAAC TCGCCGAG TTA CTCAGCGA AGCAGTTGACCGTGC CJA_2411 2752247 - 2753986 + | arginyl-tRNA synthetase TERM 3566 2754013 - 2754040 + F 75 -9.9 -3.54543 | gap 1, opp_overlap 2754013, overlap 2754016 2754038 ACCAGCAGCAAGCGA CAC-CCCAGGGG ACCAG CTCCTGGGTGTG TTTACAGCACTGCAT TERM 3567 2754016 - 2754036 + F 74 -10.4 -3.24411 | opp_overlap 2754013, overlap 2754013 AGCAGCAAGCGACAC CCCAGGGG ACCAG CTCCTGGG TGTGTTTACAGCACT TERM 3568 2754376 - 2754362 - g 75 -5 -4.78107 | CAGGACTATGAAAAA CAAATC CGG GATCTG CGCGAATTCATCGCC CJA_2412 2754203 - 2755102 + | hypothetical protein TERM 3569 2755125 - 2755104 - T 100 -14.5 -4.15044 | opp_overlap 2755092 2755090 2755100 2755099 2755095 GGGGGGTCGAATAAA CCCTCTCTG TTAC CAGAGAGGG GCTACTGATTTTTGC pel3B 2756205 - 2755171 - | pectate lyase, putative, pel3B TERM 3570 2755946 - 2755973 + g 74 -6.4 -4.53303 | gap 1, opp_overlap 2755937 GATACACCCGTACCA CTG-GAAGGAATG GAA CATTCTTTCACGG TTTTATCTGGAGCTG TERM 3571 2756426 - 2756409 - H 77 -3.3 -5.23292 | TCATATAAAATAAAA CGCTCAC AGCA ATGCGCG ACCTCACTGGCCCTT TERM 3572 2756750 - 2756765 + G 74 -3.2 -4.91511 | TTTTACGTTTATCTA CCCG GTTTTTCG CGGG TTTTTCTCGTCGCGT TERM 3573 2757485 - 2757475 - g 75 -5.4 -4.65895 | opp_overlap 2757475 TGTCTTACGCAAAAA TGCT GGC AGCA TATCTTCCGCTTGGC CJA_2414 2756717 - 2758861 + | BNR/Asp-box repeat domain protein TERM 3574 2758936 - 2758951 + G 70 -4.6 -4.55689 | opp_overlap 2758918, overlap 2758924 2758938 AGCGTTTTATGCGCT GTCTGC GCAT GCAGCC TTTTCTCTGCCTCAT TERM 3575 2759769 - 2759792 + G 78 -5.2 -4.82901 | gap 1, overlap 2759770 GGTGGTGACAGGCTC ACGCGCCGGAC GCA GTTC-GCGCGA TTTTTATAACGGCCG TERM 3576 2760098 - 2760084 - g 73 -4.2 -4.7497 | GGCACGTATCAAAAA TGCCCG GGG CGAACA AACAACACCCGTGGT pae12A 2758885 - 2760468 + | pectin acetylesterase, putative, pae12A CJA_2416 2760798 - 2760469 - | hypothetical protein TERM 3577 2760574 - 2760598 + g 79 -12.2 -3.01924 | opp_overlap 2760572 CATAGGCGCAATACC GCAGTTGCCG GGAAG CGGTAACTGC TGTTCAACCAGCGTG CJA_2417 2763008 - 2760870 - | ATP-dependent helicase, DinG family CJA_2418 2764326 - 2762998 - | Acyltransferase domain protein TERM 3578 2765469 - 2765455 - g 85 -8.5 -4.50193 | opp_overlap 2765455 AGGAATTAATCAAAA GCGCC GACCG GGCGC TTTACAAAGTCAAAC CJA_2420 2764341 - 2765885 + | Response regulator pyrB 2766898 - 2765882 - | aspartate carbamoyltransferase eryB 2768184 - 2767015 - | NAD binding site:D-amino acid oxidase TERM 3579 2767322 - 2767341 + g 70 -4.2 -4.59109 | AACAGGTAGTCTTGC TCCTCCTG GCTA CAGTGGGA TTTTTCGGGGATGTC TERM 3580 2767409 - 2767389 - G 70 -9.7 -3.13403 | overlap 2767387 TGGTTCCCACCAACA GCTTGCCCT CCC AGGGCAAGA CAAAAACAGCGCGCT TERM 3581 2767433 - 2767416 - G 77 -3.4 -5.09762 | gap 1 AGGGCAAGACAAAAA CAGCGCG CTTGT CG-GCTG GCGCCTCCAGGTAGA CJA_2422 2769633 - 2768305 - | tRNA and rRNA cytosine-C5-methylase TERM 3582 2768611 - 2768570 - G 72 -7.2 -4.25104 | gap 1 TCGGCGGGATTAAAA CGCCAGCGGGCATCCGG GTTGCGCCG CCAGGTGCCCGA-GGCG GTACAGGGTGCATCG TERM 3583 2768662 - 2768682 + g 70 -9.7 -3.17763 | opp_overlap 2768645 CTGCTGGCGGGCAAT CTCTTGCGG TAA CTGCAAGGG TTGCTCACCTGTCCA TERM 3584 2768724 - 2768742 + g 70 -5.8 -4.28254 | opp_overlap 2768705 2768706 2768723 2768719, overlap 2768705 GCAGGTTAAATAAAC CGGCGCGC TTG GCTCGGCG TTTTAGCTCTTCCAA TERM 3585 2769305 - 2769265 - G 81 -8.2 -4.37886 | gap 1, opp_overlap 2769266 2769268, overlap 2769236 GCACTCTGCATAAAA CCGGCGGCGCTCCGCTTTG TCAG CAAGGCGCAAAGCC-CCGG TATCCCAGCCCTGGC CJA_2423 2770334 - 2769654 - | hypothetical protein TERM 3586 2769758 - 2769726 - G 70 -6.9 -4.12902 | overlap 2769717 2769731 CAACCAGCGGTAAAA CACACGCGTATCACC ACT GAGGATACGCTGGTG AAAACGCAGCCCAAT TERM 3587 2770302 - 2770292 - G 70 -6.8 -4.0492 | opp_overlap 2770292 TAATCGGCAGATAAA CCAG TGG CTGG TTATCGATCAACAAC gfo 2770614 - 2771717 + | glucose-fructose oxidoreductase uvrB 2773783 - 2771756 - | excinuclease ABC, B subunit CJA_2427 2774328 - 2775032 + | PEP-CTERM putative exosortase interaction domain protein CJA_2426 2776002 - 2775010 - | transcriptional regulator, LysR family TERM 3588 2776175 - 2776165 - g 71 -2.4 -4.89567 | CTGGAAAACACAAAA CCCC AAT GGTG AAGTTGTCATACGCG CJA_2428 2776067 - 2776666 + | Flavodoxin-like fold subfamily TERM 3589 2776681 - 2776651 - f 77 -11.1 -3.22209 | opp_overlap 2776656 2776657, overlap 2776649 2776656 ACACGAAATTGAACA GGAAATCGCGGCC TGATT GGCCGCCCTTTCC CCCAACCGGAGGAAC CJA_2429 2776703 - 2777557 + | pirin TERM 3590 2777577 - 2777595 + F 100 -10.3 -5.79595 | GTTTTTGCATAGTTT GCAGTGC CTCGC GCACTGC TTTTTTGTTTTCACA TERM 3591 2778005 - 2778015 + G 75 -6.8 -4.43283 | overlap 2777991 ACGGGCGCAGTATCA CCTG CGC CAGG TTTGTGTTTATCTAA CJA_2430 2777643 - 2778182 + | NAD(P)H:quinone oxidoreductase TERM 3592 2778324 - 2778301 - T 85 -12.4 -3.35996 | opp_overlap 2778302, overlap 2778302 TAGTTCTACTCATAA GGCGAGCCTC ATTT GAGGCTCGCT TTTTTTATGATTCGG TERM 3593 2778302 - 2778323 + T 100 -15.9 -5.71983 | opp_overlap 2778301 2778302 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG TERM 3594 2778323 - 2778302 - T 90 -15.9 -2.61383 | opp_overlap 2778302, overlap 2778301 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG CJA_2431 2779446 - 2778295 - | ISCja2, transposase CJA_2432 2780068 - 2779601 - | Dps family protein CJA_2433 2780673 - 2780200 - | acetyltransferase, GNAT family TERM 3595 2780360 - 2780344 - G 74 -5.8 -4.47328 | overlap 2780345 AAGGGCATGATAAAA CGCCAC TACCT GTGGCA ATGCAAAGCAATAAC TERM 3596 2780609 - 2780599 - G 72 -5.4 -4.46212 | CTGGGCACGATAAAA TCGT TCA ACGA CAGGATGGGCTTCCG CJA_2434 2782655 - 2780673 - | von Willebrand factor type A domain protein TERM 3597 2782264 - 2782289 + g 71 -11.1 -2.93382 | opp_overlap 2782259, overlap 2782252 CCTGCAACGACATCT TGCGCTGCCTT TTCC AGGGCAGCGCC TATATGGGTGTGCAG CJA_2435 2783281 - 2782793 - | hypothetical protein CJA_2436 2783745 - 2783302 - | hypothetical protein CJA_2437 2784055 - 2783759 - | hypothetical protein TERM 3598 2783873 - 2783896 + g 100 -5.3 -5.79526 | opp_overlap 2783872 2783873 GAGGCTTTCGATAAC CTTGCCAAT ATCGGC ATTGGCCAG TTTTTTTTCCGGTGT rnd 2785230 - 2784094 - | ribonuclease D recR 2785850 - 2785257 - | recombination protein RecR CJA_2440 2786188 - 2785871 - | conserved hypothetical protein TIGR00103 dnaX 2788266 - 2786224 - | DNA polymerase III, gamma and tau subunits TERM 3599 2786726 - 2786755 + g 100 -9.2 -5.30155 | overlap 2786728 2786739 GCGGGTAACGCGCTG GGCTCAGGCGCC GCCAAA GGCGCCTCAGGC TTTTTTGGTTCATCG TERM 3600 2788057 - 2788010 - G 90 -9.1 -4.45485 | gap 2, opp_overlap 2788011 2788024 2788025, overlap 2788012 ATCAGATCGACAAAA CG-GCCCT-CGGCAATTTCGCGG CAGG CCGCGCACTGGCCACAGGGCTCG GAGCTGACGCCAGTT CJA_2442 2788709 - 2788530 - | hypothetical protein CJA_2443 2788784 - 2789281 + | thiol peroxidase TERM 3601 2789313 - 2789332 + F 89 -6.4 -5.29782 | opp_overlap 2789298 2789313 CCCCTATCTGTATAA GCCCCT ATATCAGC AGGGGC TTTTTTATACCTGTC CJA_2444 2789506 - 2790984 + | histidine kinase sensor protein TERM 3602 2791399 - 2791383 - g 76 -10.9 -3.30007 | AACACTGCTCGACAA TTACCGC AAC GCGGTAA AGCTGCCGGGGGAAT CJA_2445 2790994 - 2791416 + | two-component response regulator TERM 3603 2793082 - 2793070 - g 72 -6.9 -4.20806 | GAGGCCAAAACCAAA GGCCG TGG CAGCC ACCAGCTCTATCGCA CJA_2447 2791417 - 2793930 + | MorA metR-1 2794840 - 2793920 - | transcriptional activator MetR TERM 3604 2794770 - 2794794 + g 95 -13.6 -3.53012 | opp_overlap 2794746 2794766 2794765, overlap 2794771 GTCAGAAACACCCGC TCGGCAGCCT CGACC AGGCTGCCGG TTTCACGCAGGGCAA TERM 3605 2794771 - 2794793 + g 90 -14.9 -2.71712 | opp_overlap 2794746 2794766 2794765, overlap 2794770 TCAGAAACACCCGCT CGGCAGCCT CGACC AGGCTGCCG GTTTCACGCAGGGCA TERM 3606 2795229 - 2795241 + G 82 -9.1 -4.22652 | CCGGTTTAAGCCTTA TCCCC ACA GGGGA TTTTGCCTGGTATGA TERM 3607 2796412 - 2796377 - g 75 -11.8 -3.10012 | AATGCGATCACCGAA GCGCTGTGGAATCGCC AATC GCCGTTTGCACAGCGC ATTGCCAAACAGCAG TERM 3608 2797311 - 2797301 - g 72 -8.2 -3.794 | overlap 2797302 GTGCAACTCATCAAA CGCG CCG CGCG CCAGCTCCCCACAGA metE 2795048 - 2797477 + | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase TERM 3609 2797575 - 2797557 - f 76 -11.7 -2.5409 | opp_overlap 2797555, overlap 2797505 ACAAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTGTAATCAACGAC TERM 3610 2797643 - 2797625 - f 76 -11.7 -2.52464 | overlap 2797639 CCTCGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGCAGCGGCAGATG TERM 3611 2797708 - 2797690 - f 76 -11.7 -2.52464 | overlap 2797704 TTTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCGGGAGCGCCGT TERM 3612 2797775 - 2797757 - f 76 -11.7 -2.52543 | opp_overlap 2797754 2797753 AGCGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTGGGTTTAACTGC TERM 3613 2797841 - 2797823 - f 76 -11.7 -2.52676 | overlap 2797837 GAGTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCGATGCCGCGTAA TERM 3614 2797907 - 2797889 - f 76 -11.7 -2.53382 | overlap 2797903 AGCAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCGGCGCTGGTAGT TERM 3615 2797973 - 2797955 - f 76 -11.7 -2.52464 | GGCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGCATAACCAGCTG TERM 3616 2798039 - 2798021 - f 76 -11.7 -2.53015 | overlap 2798035 ATATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGCACCCGCTCGGC TERM 3617 2798105 - 2798087 - f 76 -11.7 -2.53263 | TTGAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCACCTGTGGTGGG TERM 3618 2798172 - 2798154 - f 76 -11.7 -2.53382 | overlap 2798168 ACGAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGTCCGCGAGGATC TERM 3619 2798240 - 2798222 - f 76 -11.7 -2.52464 | opp_overlap 2798221 2798220 TCTCGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTTTAGACTGCAA TERM 3620 2798306 - 2798288 - f 76 -11.7 -2.53263 | overlap 2798269 2798268 TGGAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCGCCAAGCAATC TERM 3621 2798372 - 2798354 - f 76 -11.7 -2.52543 | opp_overlap 2798370 ATCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGGACAACATCCGG TERM 3622 2798439 - 2798421 - f 76 -11.7 -2.53015 | opp_overlap 2798420 2798419 ACAGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTCTTGATGCTTT TERM 3623 2798505 - 2798487 - f 76 -11.7 -2.52464 | opp_overlap 2798489 CCCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCATTAAATTCAGG TERM 3624 2798571 - 2798553 - f 76 -11.7 -2.52896 | CTATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTCGATCAATAGAT TERM 3625 2798637 - 2798619 - f 76 -11.7 -2.52543 | opp_overlap 2798616 2798617 2798633, overlap 2798633 AGTCGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCGCTGCGCTTTTT TERM 3626 2798633 - 2798647 + F 78 -4.9 -5.0538 | opp_overlap 2798619 2798633, overlap 2798616 2798617 ACGCGCTCGCGAAGA GCGCG ACCGC TGCGC TTTTTTGCCCTCGGC TERM 3627 2798703 - 2798685 - f 76 -11.7 -2.52464 | opp_overlap 2798699, overlap 2798699 GCCGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCCTTGGCGCGCT TERM 3628 2798699 - 2798717 + F 74 -8.1 -3.90318 | gap 1, opp_overlap 2798685 2798699 ACGCGCTCGCGAAGA GCGCGACC CCTT GG-CGCGC TTTATAGACTACTCG TERM 3629 2798770 - 2798752 - g 72 -11.7 -2.52896 | GTAGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACAACCGTATCACTG TERM 3630 2798836 - 2798818 - g 72 -11.7 -2.52896 | TTACGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCAATCATGGCGGC TERM 3631 2798903 - 2798885 - g 72 -11.7 -2.52464 | GCCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGGTATCAAGCCGC TERM 3632 2798970 - 2798952 - g 72 -11.7 -2.52464 | CTGTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTATCCAATTTCGA TERM 3633 2799037 - 2799019 - g 72 -11.7 -2.53911 | opp_overlap 2799025 TGAAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTCGGGTTAATAC TERM 3634 2799103 - 2799085 - g 72 -11.7 -2.52464 | opp_overlap 2799085 2799086, overlap 2799099 CGGTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGCGCTTTAATGAT TERM 3635 2799086 - 2799109 + G 81 -10.3 -3.86944 | gap 1, opp_overlap 2799085 2799099, overlap 2799085 GGTGTTTCAATCCAC GCGC-TCGCG AAGAG CGCGACGCGC TTTAATGATTCTACG TERM 3636 2799169 - 2799151 - g 72 -11.7 -2.53263 | overlap 2799165 TGCAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTGCGCTACCCAGG TERM 3637 2799180 - 2799206 + G 73 -9.5 -3.64703 | GCGCGACTGCGCTAC CCAGGTGAG CCGTCTGCA CTCACCTGG TTTCAATCCACGCGC TERM 3638 2799235 - 2799217 - g 72 -11.7 -2.52464 | opp_overlap 2799216 2799215, overlap 2799231 CCTGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTATAATCCGCCG TERM 3639 2799300 - 2799282 - g 72 -11.7 -2.52676 | opp_overlap 2799283 GACCGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACACTTTAGCGATGG TERM 3640 2799366 - 2799348 - g 72 -11.7 -2.5409 | ACAAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGGCAATTCCTCTA CJA_2449 2798709 - 2799386 + | hypothetical protein TERM 3641 2799433 - 2799415 - T 76 -11.7 -2.52464 | opp_overlap 2799414 2799413 2799429 2799430, overlap 2799429 TCCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTGTGCGCGTTTA TERM 3642 2799499 - 2799481 - T 76 -11.7 -2.53263 | GGCAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCAAAAGTGTTTAA TERM 3643 2799565 - 2799547 - T 76 -11.7 -2.52464 | TTCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACATCTGTTCGCGGC TERM 3644 2799631 - 2799613 - T 76 -11.7 -2.52464 | opp_overlap 2799610 CCTGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGTGTGGTGGCCGT TERM 3645 2799697 - 2799679 - T 76 -11.7 -2.52676 | CATTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCACATTAACCAGA TERM 3646 2799764 - 2799746 - T 76 -11.7 -2.52676 | opp_overlap 2799752 CAGGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGTTCAGCGTGTAT TERM 3647 2799830 - 2799812 - T 76 -11.7 -2.52464 | GCGGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACACATGTACCCAAA TERM 3648 2799896 - 2799878 - T 76 -11.7 -2.52896 | overlap 2799892 GGATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGCGTATCCATAAC TERM 3649 2799962 - 2799944 - T 76 -11.7 -2.53213 | overlap 2799958 GAATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCGGCTGGATGAC TERM 3650 2800028 - 2800010 - T 76 -11.7 -2.52464 | opp_overlap 2800008 2800025, overlap 2800024 TGGTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACATTTATGCGCGTA TERM 3651 2800094 - 2800076 - T 76 -11.7 -2.52795 | opp_overlap 2800073 AAGTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTGGTGTTCAGGGA TERM 3652 2800142 - 2800160 + T 76 -11.7 -2.51661 | opp_overlap 2800142, overlap 2800141 2800140 GCAAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTTCTTATCCCTT TERM 3653 2800160 - 2800142 - T 76 -11.7 -2.53911 | opp_overlap 2800142 2800141 2800140 GCAAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTTCTTATCCCTT TERM 3654 2800226 - 2800208 - T 76 -11.7 -2.53213 | TAATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTACAAGCGGATC TERM 3655 2800291 - 2800273 - T 76 -11.7 -2.53581 | TACAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCTGGTAGAGACTG TERM 3656 2800357 - 2800339 - T 76 -11.7 -2.52464 | overlap 2800353 TGCGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCAGGTGTCGGGCT TERM 3657 2800424 - 2800406 - T 76 -11.7 -2.52676 | opp_overlap 2800398 CACTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCAAGGGGATCGAT TERM 3658 2800489 - 2800471 - T 76 -11.7 -2.52676 | CAGTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCACCAAGATCGC TERM 3659 2800554 - 2800536 - T 76 -11.7 -2.53263 | opp_overlap 2800534 2800539 GTTAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCTTTAGGTTTGCC CJA_2450 2800663 - 2800559 - | hypothetical protein TERM 3660 2800619 - 2800601 - G 72 -11.7 -2.53263 | opp_overlap 2800604 2800608, overlap 2800615 CTGAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTCGCCCGCTTCG TERM 3661 2800686 - 2800668 - R 76 -11.7 -2.52896 | overlap 2800652 GCATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTCGGAATGCTTGG TERM 3662 2800753 - 2800735 - R 76 -11.7 -2.52543 | overlap 2800749 ACTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACACGGCTTCAGCTA TERM 3663 2800820 - 2800802 - R 76 -11.7 -2.52464 | GGCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCTGAAACATACCT TERM 3664 2800886 - 2800868 - R 76 -11.7 -2.52464 | opp_overlap 2800877, overlap 2800882 TTTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCAGATCGGACGCG TERM 3665 2800902 - 2800882 - R 73 -10.3 -3.01791 | opp_overlap 2800877, overlap 2800868 ACGCGCTCGCGAAGA GCGCGACCA GAT CGGACGCGC TACCACTTCTTGTGC TERM 3666 2800952 - 2800934 - R 76 -11.7 -2.52896 | opp_overlap 2800937 CGATGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCTTCCGTGTTACC TERM 3667 2801018 - 2801000 - R 76 -11.7 -2.52464 | CGCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACAGGAGCTCTTGCC TERM 3668 2801084 - 2801066 - R 76 -11.7 -2.52464 | opp_overlap 2801065 2801064 GCTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTCTCTTGAAGTT TERM 3669 2801150 - 2801132 - R 76 -11.7 -2.53263 | TGCAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCGAACAATGCGAT TERM 3670 2801216 - 2801198 - R 76 -11.7 -2.52676 | CATTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTAAGGCAAACAGC TERM 3671 2801283 - 2801265 - R 76 -11.7 -2.52676 | opp_overlap 2801266 TATTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACACTATCTTGGGCG TERM 3672 2801350 - 2801332 - R 76 -11.7 -2.52464 | CCTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTAAATCCGTTAAT TERM 3673 2801433 - 2801387 - R 71 -7.4 -3.91897 | overlap 2801388 2801398 2801412 CTTCTGATGGATAAA GTTTCAAT-CCACGCGCTCGCG AAGAG CGCGA-CGCGCGGCATTGCAAG GTAGAACTTTTACGA TERM 3674 2801432 - 2801388 - R 75 -10.9 -2.94924 | overlap 2801387 2801398 2801412 TTCTGATGGATAAAG TTTCAAT-CCACGCGCTCGCG AAGAG CGCGA-CGCGCGGCATTGCAA GGTAGAACTTTTACG TERM 3675 2801423 - 2801398 - R 78 -12.6 -2.54387 | gap 1, overlap 2801388 2801387 2801412 TAAAGTTTCAATCCA CGCGC-TCGCG AAGAG CGCGACGCGCG GCATTGCAAGGTAGA TERM 3676 2801483 - 2801465 - R 76 -11.7 -2.53382 | opp_overlap 2801464 2801463 AGCAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTTCCCAGGTGGT TERM 3677 2801550 - 2801532 - R 76 -11.7 -2.52464 | opp_overlap 2801531 2801532 2801541 TTTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCCGCTTTACTGT TERM 3678 2801604 - 2801581 - R 73 -9.6 -3.47431 | opp_overlap 2801589, overlap 2801598 ATAGCCAAATACCAA GAGCGCGT TTCAATCC ACGCGCTC GCGAAGAGCGCGACT TERM 3679 2801616 - 2801598 - R 76 -11.7 -2.52464 | opp_overlap 2801589, overlap 2801581 GCGCGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTGGATGAATAGTT TERM 3680 2801682 - 2801664 - R 76 -11.7 -2.52464 | CGTTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCACCACCATCTG TERM 3681 2801748 - 2801730 - R 76 -11.7 -2.53213 | opp_overlap 2801728 TAACGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCCGAGATTATCAG TERM 3682 2801814 - 2801796 - R 76 -11.7 -2.52464 | opp_overlap 2801798 GTCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCATTGACTCTGCG TERM 3683 2801880 - 2801862 - R 76 -11.7 -2.52543 | AGGGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTACCAGCGTGTGA TERM 3684 2801947 - 2801929 - R 76 -11.7 -2.53263 | CCGAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACACAAACGGGGCTT TERM 3685 2802012 - 2801994 - R 76 -11.7 -2.52464 | opp_overlap 2801993 2801992 TGCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTGTAGGGCCATC TERM 3686 2802077 - 2802059 - R 76 -11.7 -2.53263 | overlap 2802073 GGCAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACCTTCCGCTGCGCG TERM 3687 2802143 - 2802125 - R 76 -11.7 -2.52464 | overlap 2802139 GGCTGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACGTGCTACGAAGAC TERM 3688 2802209 - 2802191 - R 76 -11.7 -2.52896 | opp_overlap 2802190 2802189 TGAGGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTTTCATGTCCGAA TERM 3689 2802276 - 2802258 - R 76 -11.7 -2.53581 | opp_overlap 2802256 GACAGTTTCAATCCA CGCGCTC GCGAA GAGCGCG ACTGCATTAAGGTAA cas2 2802748 - 2802455 - | CRISPR-associated protein Cas2 cas1 2803773 - 2802757 - | CRISPR-associated protein Cas1 TERM 3690 2802892 - 2802918 + g 81 -7.3 -4.69053 | TACCTCTGATTGCTT GCGTTCCTGGT AGGCA ACCAGTAATGC TTTTCTTGCATCATC cas4 2804402 - 2803770 - | CRISPR-associated protein Cas4 TERM 3691 2804343 - 2804319 - G 100 -16.5 -3.39895 | opp_overlap 2804316 2804319 TTCGTTATGAATTAA CGCACACTGCC TGG GGCAGTATGCG TAGTGTTGGAGGGCG TERM 3692 2804319 - 2804343 + g 85 -14.3 -2.73875 | opp_overlap 2804319, overlap 2804316 TTCGTTATGAATTAA CGCACACTGCC TGG GGCAGTATGCG TAGTGTTGGAGGGCG csd2 2805222 - 2804389 - | CRISPR-associated protein, Csd2 family TERM 3693 2804700 - 2804723 + g 91 -3.2 -5.52986 | gap 1 CACTATCAACCCTGT GTTTC-ATACC CAT GGTATCGGAGC TTTTTTTGCTGCCAT csd1 2807246 - 2805219 - | CRISPR-associated protein, Csd1 family TERM 3694 2806695 - 2806664 - G 73 -3.6 -4.7871 | AAGTATCAGGAAAAA GGTCGCCCGGAGTA ATAA CACTCCAGCAAACC ATTGCATTACCTTGA TERM 3695 2807021 - 2807035 + g 75 -11.4 -2.96249 | opp_overlap 2807020 2807017, overlap 2807018 TGTCTGCTAAAGGAT GTGGCG CTT CGCCAC TACTTCTTCCTGCGG TERM 3696 2807166 - 2807177 + g 79 -3.6 -5.06414 | CATAGTATGACTAGT CGGC ATTA GCTG TTTTTCTTCCGGCAA CJA_2456 2807947 - 2807243 - | CRISPR-associated protein Cas5, Dvulg subtype cas3 2810409 - 2807956 - | CRISPR-associated helicase Cas3 domain protein TERM 3697 2808130 - 2808163 + g 70 -10.3 -3.24166 | overlap 2808125 AACACTGTATTTTTG CGCTTGTCGTAACAA CTGA TAGTAACGACGAGCG TTAAATTCCTTCGCT CJA_2458 2811452 - 2810616 - | hypothetical protein TERM 3698 2811151 - 2811123 - G 77 -12.4 -2.72829 | opp_overlap 2811113, overlap 2811112 2811122 GATATCCGGTGAAAC CTGTCGCACCGG TATTT CCAGTGCGGCAG TGTAAGGTGAAACGG CJA_2459 2812011 - 2811550 - | putative TonB-dependent receptor CJA_2460 2814379 - 2811983 - | EAL domain protein CJA_2461 2817192 - 2814442 - | probable sensor/response hybrid TERM 3699 2814606 - 2814635 + g 90 -10.1 -4.37092 | gap 1 CCACAATACCGAGGT TCGCTGCACTGTTT TTA AAACTGTGC-GCGA TTTTATACAGGCGAT CJA_2462 2817772 - 2817185 - | hypothetical protein TERM 3700 2818514 - 2818482 - g 74 -2.1 -5.09895 | gap 3, opp_overlap 2818494 2818495, overlap 2818484 2818487 CATGGATTGAAAAAA CACCA-GGGCAATTGC CAGC GCA-TCGCCCATGG-G CATCGCTCGCGTATT TERM 3701 2818513 - 2818484 - g 70 -5.8 -4.17608 | opp_overlap 2818494 2818495, overlap 2818482 2818487 TGGATTGAAAAAACA CCA-GGGCAATTGC CAGC GCA-TCGCCCATGG GCATCGCTCGCGTAT TERM 3702 2818707 - 2818717 + G 70 -6.8 -4.0825 | overlap 2818703 GAGCTGACCCTGCCG CAGC GCT GCTG TTATTTGATTGACAC TERM 3703 2818736 - 2818748 + G 70 -6.3 -4.15222 | TTTGATTGACACCGA TTCCA CTG TGGAA TTTATTGCACAACAT CJA_2463 2818005 - 2818856 + | hypothetical protein TERM 3704 2818927 - 2818952 + T 100 -11.3 -5.4505 | opp_overlap 2818927 CACCTGCTCGCAAAA GGCGTTTTTTC TCGG GAAAAAATGCC TTTTTTGTTGCCGAC TERM 3705 2818952 - 2818927 - T 79 -9.1 -4.07885 | opp_overlap 2818927 CACCTGCTCGCAAAA GGCGTTTTTTC TCGG GAAAAAATGCC TTTTTTGTTGCCGAC CJA_2464 2819092 - 2818982 - | hypothetical protein TERM 3706 2819183 - 2819170 - g 74 -2.3 -5.14965 | overlap 2819174 ATGGCCATCAAAAAA GCACC CGCC GCTGC CCCCAAAGCAGCTGC TERM 3707 2819227 - 2819206 - g 71 -2.2 -5.02074 | gap 1, overlap 2819221 2819222 GCAGCTGCCAAAAAA GCCCCTGCT GCTAA AGC-GGCGC CTGCCAAAGCTGCAC CJA_2465 2819155 - 2819634 + | DNA-binding protein HU family TERM 3708 2819691 - 2819656 - T 100 -16.4 -3.04263 | opp_overlap 2819667, overlap 2819659 2819667 ACCGGATTGGGAATA CCATAAAAAAACCCGC TAGC GCGGGTTTTTTTATGC CTGGCAGCAGCAGCG TERM 3709 2819688 - 2819659 - T 95 -16.7 -2.74523 | opp_overlap 2819667, overlap 2819656 2819667 GGATTGGGAATACCA TAAAAAAACCCGC TAGC GCGGGTTTTTTTA TGCCTGGCAGCAGCA TERM 3710 2819667 - 2819680 + T 100 -9.5 -5.64274 | opp_overlap 2819659 2819656 2819667 AATACCATAAAAAAA CCCGC TAGC GCGGG TTTTTTTATGCCTGG TERM 3711 2819680 - 2819667 - T 100 -9.5 -5.70829 | opp_overlap 2819667, overlap 2819659 2819656 AATACCATAAAAAAA CCCGC TAGC GCGGG TTTTTTTATGCCTGG CJA_2466 2820131 - 2819709 - | histidine triad family protein TERM 3712 2820369 - 2820379 + G 74 -8.2 -3.92869 | opp_overlap 2820369 2820368 GATGATCCGCAAAAT GGCC TCT GGCC TTTATAACTGGCTGC TERM 3713 2821000 - 2820970 - g 100 -13.2 -4.74706 | overlap 2820972 GCCAATATCGAAAAA GCCGAAGCACTGCC CCC GGCAGCGCCCCGCC CTGCACCACAGCATG TERM 3714 2820998 - 2820972 - g 90 -14.4 -2.65737 | overlap 2820970 CAATATCGAAAAAGC CGAAGCACTGCC CCC GGCAGCGCCCCG CCCTGCACCACAGCA proS 2820157 - 2821992 + | prolyl-tRNA synthetase CJA_2468 2822055 - 2822405 + | hypothetical protein TERM 3715 2822455 - 2822436 - T 100 -10.7 -5.71712 | opp_overlap 2822436 CGGCAGATAAAAAAA CACCCGC TTAAAC GCGGGTG TTTTTAGCATTGCGA TERM 3716 2822436 - 2822455 + T 93 -10.7 -4.66833 | opp_overlap 2822436 CGGCAGATAAAAAAA CACCCGC TTAAAC GCGGGTG TTTTTAGCATTGCGA cbp2F 2824881 - 2822476 - | carbohydrate binding protein, putative, cbp2F TERM 3717 2822676 - 2822666 - G 70 -6.8 -4.05033 | CCCAGCGGATAGAAA GTGC CCA GCAC ACGCGCTGACCCGCT TERM 3718 2823023 - 2823044 + g 70 -4.3 -4.55023 | overlap 2823015 2823026 2823027 2823037 GGATAGGCCCTGCCA TCCGCTGGG TTAT CCCAGGTGA TTTTCTGGTATTGCG TERM 3719 2824025 - 2824014 - G 72 -5.8 -4.41348 | GCTCCGGGAAATAAA TCGG CGAG CCGA AGTAACTGTCCCAGA TERM 3720 2824958 - 2824940 - R 100 -12.4 -5.95166 | opp_overlap 2824940 CCGAAGCAAAAAAAA TCCCGCAG AAG CCGCGGGA TTTTTCAGGTTTTAT TERM 3721 2824940 - 2824958 + r 100 -10.2 -4.75063 | opp_overlap 2824940 CCGAAGCAAAAAAAA TCCCGCAG AAG CCGCGGGA TTTTTCAGGTTTTAT TERM 3722 2824983 - 2825005 + r 83 -6.5 -5.02439 | TTTTATTACCTGTTC TATTGATAA CGACC TTATCAATA TTTTTATGGTTCTCT CJA_2470 2825097 - 2824963 - | hypothetical protein TERM 3723 2825068 - 2825038 - G 100 -14.1 -5.75342 | overlap 2825040 CGTTTGCAAAAAAAA GATCGCTACGGCA GTCAT TGCCGTAGCGATA ATCACGCGATCGCTG TERM 3724 2825066 - 2825040 - G 100 -16.7 -4.52949 | overlap 2825038 TTTGCAAAAAAAAGA TCGCTACGGCA GTCAT TGCCGTAGCGA TAATCACGCGATCGC xyn10A 2826922 - 2825087 - | endo-1,4-beta-xylanase, xyn10A TERM 3725 2827024 - 2827059 + r 100 -17 -3.04144 | opp_overlap 2827014 2827028, overlap 2827028 AAAAATTATTCACAG CAAACAGTGGATGCCT GAAC GGGCATCCACTGTTCG TATTGGCAATCAGAA TERM 3726 2827028 - 2827055 + r 100 -16.4 -3.36749 | opp_overlap 2827014 2827028, overlap 2827024 ATTATTCACAGCAAA CAGTGGATGCCT GAAC GGGCATCCACTG TTCGTATTGGCAATC TERM 3727 2827055 - 2827028 - R 100 -15.7 -3.85092 | opp_overlap 2827028 2827024, overlap 2827014 ATTATTCACAGCAAA CAGTGGATGCC TGAACG GGCATCCACTG TTCGTATTGGCAATC cel9A 2829968 - 2827080 - | endo-1,4-beta glucanase, cel9A TERM 3728 2829008 - 2829030 + g 77 -11.3 -3.1855 | gap 1 TCCAGATACGTGCAG CCTGTGCGGC TGTT GCCGC-CAGG TTAAGTGTTGCAGCC TERM 3729 2830114 - 2830086 - R 80 -6.7 -4.91109 | overlap 2830088 GTGTCATCACAAAAA TCGGCACATGGCA CAA CACCATGTACCTA AGGGGAATTAAAAAA TERM 3730 2830141 - 2830130 - R 76 -2.2 -5.27477 | AGGGGAATTAAAAAA GCCA TCCT TAGC CGGGGCATCTCTCCA cel6A 2832324 - 2830228 - | cellobiohydrolase, putative, cel6A TERM 3731 2831281 - 2831265 - G 70 -10.9 -2.69799 | opp_overlap 2831263 2831263, overlap 2831268 2831269 GCAGGTCATAGACTA CAACCTG GAT CAGGTTG GCATTTTGATCCAGT TERM 3732 2832290 - 2832303 + g 82 -2.3 -5.33848 | opp_overlap 2832271 AGGCTTAGCAAACCT GCCAA ACCA TAGGC TTTTTTCATTCTAGT TERM 3733 2832575 - 2832554 - g 91 -8.1 -5.1287 | opp_overlap 2832554, overlap 2832510 2832509 TTGATATGCAAAAAA TTGCATGCA TACC TGCATACAA TTGATAAAAAACGCC CJA_2474 2832364 - 2832579 + | hypothetical protein TERM 3734 2832746 - 2832702 - T 79 -10.3 -3.64703 | opp_overlap 2832701 2832705, overlap 2832705 CTTTTTTTATTTAAA TAATGTGGTGCAGATAAAC TCTTTTC ATTTATCTGCACCAGATCA CTTCCCTTTCGCCCT TERM 3735 2832743 - 2832705 - T 80 -9.8 -3.96216 | opp_overlap 2832701 2832705, overlap 2832702 TTTTTATTTAAATAA TGTGGTGCAGATAAAC TCTTTTC ATTTATCTGCACCAGA TCACTTCCCTTTCGC man5B 2834610 - 2832853 - | endo-1, 4-beta mannanase, man5B TERM 3736 2834756 - 2834766 + H 72 -2.6 -5.00616 | CTAAAACCATTGTGT TTTT TCC AAAA TTTTTTCAGGGCACA CJA_2476 2835013 - 2835129 + | hypothetical protein TERM 3737 2835189 - 2835164 - f 87 -6.9 -5.12987 | gap 1, overlap 2835166 GTAAATAAAAATAAA TAGCAACCCCCT GCT ATGGGGTTGC-A GAGCCGATTGTCACC TERM 3738 2835188 - 2835166 - f 95 -12 -4.15156 | overlap 2835164 AAATAAAAATAAATA GCAACCCCCT GCT ATGGGGTTGC AGAGCCGATTGTCAC TERM 3739 2837724 - 2837699 - g 87 -13.9 -3.05963 | opp_overlap 2837697 AGCTTTAGCGCAACA GTGACCGCCGG CATC CCGGCGGCCGC GCGTAAATTCAAAGC gly74A 2835809 - 2838862 + | endo-1,4-beta-glucanase/xyloglucanase, putative, gly74A TERM 3740 2838886 - 2838938 + T 100 -13.6 -4.63218 | gap 1, opp_overlap 2838863 2838898 2838901 2838905, overlap 2838889 2838898 2838901 CCGTGACGGTTTTTC CCGGCCTGAAAACAACAAACCCGCC AATT GGCGGGTTTGTTGTTTA-ATGCTTG TTTTATTCCGGGCGC TERM 3741 2838889 - 2838935 + T 100 -16.1 -4.43307 | gap 1, opp_overlap 2838898 2838901 2838905, overlap 2838886 2838898 2838901 TGACGGTTTTTCCCG GCCTGAAAACAACAAACCCGCC AATT GGCGGGTTTGTTGTTTA-ATGC TTGTTTTATTCCGGG TERM 3742 2838898 - 2838927 + T 100 -20.9 -3.91642 | opp_overlap 2838898 2838901 2838905, overlap 2838889 2838886 2838901 TTCCCGGCCTGAAAA CAACAAACCCGCC AATT GGCGGGTTTGTTG TTTAATGCTTGTTTT TERM 3743 2838927 - 2838898 - T 100 -20.9 -4.07568 | opp_overlap 2838889 2838886 2838898 2838901, overlap 2838901 2838905 TTCCCGGCCTGAAAA CAACAAACCCGCC AATT GGCGGGTTTGTTG TTTAATGCTTGTTTT TERM 3744 2838901 - 2838924 + T 100 -16.8 -4.05529 | opp_overlap 2838901 2838898 2838905, overlap 2838898 2838889 2838886 CCGGCCTGAAAACAA CAAACCCGCC AATT GGCGGGTTTG TTGTTTAATGCTTGT TERM 3745 2838924 - 2838901 - T 100 -16.8 -4.17048 | opp_overlap 2838898 2838889 2838886 2838901, overlap 2838898 2838905 CCGGCCTGAAAACAA CAAACCCGCC AATT GGCGGGTTTG TTGTTTAATGCTTGT TERM 3746 2838920 - 2838905 - T 100 -11.8 -4.67697 | opp_overlap 2838901 2838898 2838889 2838886, overlap 2838901 2838898 CCTGAAAACAACAAA CCCGCC AATT GGCGGG TTTGTTGTTTAATGC lysS 2840539 - 2838941 - | lysyl-tRNA synthetase TERM 3747 2840363 - 2840386 + gT 71 -3 -4.77698 | overlap 2840367 ACGGATAGCCGCGAG CTTCTGGCGG CGTT CGGCCATGAG TTTATTTTCATCTTG prfB 2841479 - 2840490 - | peptide chain release factor 2 TERM 3748 2841364 - 2841382 + gH 70 -3.8 -4.58685 | overlap 2841367 CAATCGGCAACGCCA CTGTCGAG CGA TTCGATGG TTTTTACGACGATTT TERM 3749 2842558 - 2842597 + G 75 -7.2 -4.36914 | gap 1, overlap 2842560 CTGGCACTGGCGCGA CCCGGCGCGGTTGA-AT ACCGCCA ATGTCAACAGCGCCGAG TTTTATAGCGAAAAA man26B 2841845 - 2843305 + | endo-1, 4-beta mannanase, man26B TERM 3750 2843356 - 2843319 - T 100 -12.9 -4.62783 | opp_overlap 2843330, overlap 2843320 2843322 2843330 GATCTATCGCAAAAA CCATGAAAAAAGCCCTC GCAT GAGGGCTTTTTTCATCC AGGCAGATAACGCGT TERM 3751 2843355 - 2843320 - T 100 -16.4 -3.37188 | opp_overlap 2843330, overlap 2843319 2843322 2843330 ATCTATCGCAAAAAC CATGAAAAAAGCCCTC GCAT GAGGGCTTTTTTCATC CAGGCAGATAACGCG TERM 3752 2843353 - 2843322 - T 100 -19 -3.25166 | opp_overlap 2843330, overlap 2843320 2843319 2843330 CTATCGCAAAAACCA TGAAAAAAGCCCTC GCAT GAGGGCTTTTTTCA TCCAGGCAGATAACG TERM 3753 2843330 - 2843345 + T 100 -10.4 -5.14563 | opp_overlap 2843330 2843322 2843320 2843319 AAAACCATGAAAAAA GCCCTC GCAT GAGGGC TTTTTTCATCCAGGC TERM 3754 2843345 - 2843330 - T 100 -10.4 -5.25656 | opp_overlap 2843330, overlap 2843322 2843320 2843319 AAAACCATGAAAAAA GCCCTC GCAT GAGGGC TTTTTTCATCCAGGC CJA_2481 2844212 - 2843373 - | CobQ/CobB/MinD/ParA nucleotide binding domain protein TERM 3755 2844295 - 2844312 + r 91 -8.4 -5.00616 | opp_overlap 2844275 2844274 2844295 CACCCTAACAAAAAA GGGTGC CCGAGA GCACCC TTTTTTGCCGAACAG TERM 3756 2844312 - 2844295 - R 100 -9.1 -5.46657 | opp_overlap 2844295, overlap 2844275 2844274 CACCCTAACAAAAAA GGGTGCC CGAG AGCACCC TTTTTTGCCGAACAG CJA_2482 2847424 - 2844335 - | AcrB/AcrD/AcrF family protein TERM 3757 2845526 - 2845546 + g 85 -10.4 -4.18494 | overlap 2845512 CACCGGCAAGACTTT CTGGCCGG ATATC TCGGCCAG TTTTGCCTGCACATC TERM 3758 2845868 - 2845882 + g 71 -2.7 -4.87665 | CCCGGCCCGGTTTTC CAGGG AAACA CCCAG TTTTTCTGCATACCA acrE 2848623 - 2847496 - | efflux transporter, RND family, MFP subunit TERM 3759 2847733 - 2847721 - G 70 -6.9 -4.05446 | GGGTTCAATCACAAA CAGCG TAT CGCCG AAGGGGGCGTAGATA TERM 3760 2848088 - 2848076 - G 71 -9.1 -3.53091 | AGGTCCTGCCCTAAA TCCGC TTT GCGGA TACCGAGACGGCCAT CJA_2484 2848912 - 2849454 + | hydrolase, NUDIX family CJA_2485 2851002 - 2849476 - | tryptophan halogenase TERM 3761 2849567 - 2849536 - G 72 -7.3 -4.16016 | opp_overlap 2849535 2849553 GCATCCGGCAATAAA CGCATCTATATCG TCCAGG CGATAGCGATGCG CCTTTGCCGTACCCG TERM 3762 2851007 - 2851031 + r 83 -10 -4.11346 | opp_overlap 2851005 ACACCAGACATTATT TTGCCTGCGC CCTGC GCGCAGCCAA TTGTTGTTTCACTGT CJA_2486 2852843 - 2851002 - | hypothetical protein TERM 3763 2851278 - 2851325 + g 79 -2.6 -5.252 | gap 1, opp_overlap 2851292, overlap 2851282 2851284 2851292 TGTCGTCGGTAAGGC GTCGGCCAAGAGAACCAGCGCTG TAA CAGCACCGGTTTTATTG-CCTTC TTTTTTATAGCCCTC TERM 3764 2851282 - 2851322 + g 84 -7.5 -4.72201 | opp_overlap 2851292, overlap 2851278 2851284 2851292 GTCGGTAAGGCGTCG GCCAAGAGAACCAGCGCTG TAA CAGCACCGGTTTTATTGCC TTCTTTTTTATAGCC TERM 3765 2851312 - 2851292 - G 81 -11.1 -3.65812 | opp_overlap 2851284 2851282 2851278 2851292 CGTCGGCCAAGAGAA CCAGCGCTG TAA CAGCACCGG TTTTATTGCCTTCTT TERM 3766 2851292 - 2851312 + g 85 -6.7 -4.74539 | opp_overlap 2851292, overlap 2851284 2851282 2851278 CGTCGGCCAAGAGAA CCAGCGCTG TAA CAGCACCGG TTTTATTGCCTTCTT TERM 3767 2851805 - 2851786 - G 78 -8.6 -4.2558 | GAGGGCGCACGAAAA CGCAATTG ATCC CAATCGCG CGCATTGGTGTACCA TERM 3768 2852813 - 2852801 - G 82 -2.6 -5.42198 | GGGCAAAAAACAAAA GCGG GATAG CCAC CAGTACGGCGCGAAA CJA_2487 2853070 - 2854929 + | nodulation protein TERM 3769 2855169 - 2855193 + G 71 -2.7 -4.78107 | opp_overlap 2855171, overlap 2855153 CCTGGGGTGGATCAA CACCCGGATTA TCC TGGGCCTGGTG TTTTTCCTGCTGATC CJA_2488 2854933 - 2855340 + | hypothetical protein CJA_2489 2855340 - 2855492 + | hypothetical protein TERM 3770 2855550 - 2855568 + F 100 -12.4 -4.98531 | GCACAGCCGGTACGA GGCGGGTA AAA TGCCCGCC TTTTTCCTTTGCCGA TERM 3771 2856578 - 2856618 + G 73 -12 -2.6138 | overlap 2856577 2856574 CTACCGCCAGCCGGA CCAGGCCTGCCG-TGTGCAG GTA CTGGATAACGGCAGGC-TGG ATGTGTTCTTTGATG trmU 2855595 - 2856731 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 3772 2857322 - 2857340 + G 78 -7.4 -4.36914 | GCGCCAGGTGGGCGG CAACCGCT GGC AGCTGTTG TTTTATCGCAAGCAA CJA_2491 2856771 - 2857394 + | hypothetical protein TERM 3773 2858194 - 2858182 - g 74 -7.7 -4.11484 | GTCAACGCGGTAAAA GCAGT GGA ACTGC TGGGCAAAATCAACG TERM 3774 2858822 - 2858803 - g 81 -6.4 -4.80167 | gap 1, overlap 2858805 TACGAAAAATTAAAA GCGCTGACC CGC GGCCAG-GC CATCACCAAAGAGCT purB 2857561 - 2858952 + | adenylosuccinate lyase TERM 3775 2858984 - 2858969 - f 72 -6 -4.43208 | opp_overlap 2858969 ACATGGTGAAATAAA GGGCTC GCAA GGGCCC TTTTGTTTTTTGAAT TERM 3776 2858969 - 2858984 + F 100 -8.2 -5.43553 | opp_overlap 2858969 ACATGGTGAAATAAA GGGCTC GCAA GGGCCC TTTTGTTTTTTGAAT TERM 3777 2860019 - 2860000 - g 71 -2.1 -4.89852 | opp_overlap 2859994 CCACAGCGATAAAAA CGGCA CCTTTTTATT TGCCG ATGGTGAAGCGATTA CJA_2493 2858987 - 2860177 + | hypothetical protein TERM 3778 2860524 - 2860558 + G 95 -9.3 -4.82901 | gap 1, opp_overlap 2860523 2860524 GACTGACTGGCAAAC CCACAGTGCGGAACTC ACCC GAGT-CCGCACGCTGG TTTTTATGGAAGAAC CJA_2494 2860483 - 2860935 + | acetyltransferase, GNAT family TERM 3779 2861348 - 2861320 - g 100 -11 -4.86001 | overlap 2861321 ATTACTCTACAAAAA CGACGAAGCCAC CTACC GCGGCTTCGCCA ACTTCCAGGCCGCAC TERM 3780 2861347 - 2861321 - g 86 -12.3 -3.50877 | overlap 2861320 TTACTCTACAAAAAC GACGAAGCCAC CTACC GCGGCTTCGCC AACTTCCAGGCCGCA CJA_2495 2860949 - 2861449 + | hypothetical protein CJA_2496 2861740 - 2861483 - | hypothetical protein TERM 3781 2861770 - 2861805 + r 70 -10.4 -2.54371 | overlap 2861769 2861781 2861795 TAGTCTGTTGTGGTT AGCTGCCTCTGGGTGT TACC GCACTCAGGGGTAGCG CCTTTGTTTAAAGGG TERM 3782 2861781 - 2861807 + r 75 -6.5 -4.42464 | overlap 2861770 2861769 2861795 2861806 2861806 GGTTAGCTGCCTCTG GGTGTTACCGC ACTCA GGGGTAGCGCC TTTGTTTAAAGGGTT TERM 3783 2861885 - 2861920 + r 100 -12.8 -5.60993 | opp_overlap 2861885 GCAGGGATAATGAAA CACCAAGAAGCTGT ATAAATCA ACAGTTTCTTGGTG TTTTTTTATGCGGGG TERM 3784 2861920 - 2861885 - R 84 -10.6 -4.00868 | opp_overlap 2861885 GCAGGGATAATGAAA CACCAAGAAGCTGT ATAAATCA ACAGTTTCTTGGTG TTTTTTTATGCGGGG CJA_2497 2862711 - 2862001 - | hypothetical protein TERM 3785 2862234 - 2862211 - G 81 -4.7 -5.05113 | gap 1 TGCACACAAATAAAA GAAACG-ATC AGGTA GATTCGTTTC AAGTAGATCTATGAA TERM 3786 2862748 - 2862776 + H 73 -10.3 -2.99259 | overlap 2862745 AGCGGGCAACTTGTA GCAGCAGCGGA AAGTTAG TCCACTGCTGC TGATTGTTATGGCTG TERM 3787 2863484 - 2863516 + H 74 -10.7 -3.14931 | opp_overlap 2863471 2863473, overlap 2863486 2863490 ACGATTGACACTGTG TTCCAATCCATGC CACCTGA GCATGGATTGGTA TTCATGGCCAATAAA TERM 3788 2863486 - 2863514 + H 83 -13.3 -3.1372 | opp_overlap 2863471 2863473, overlap 2863484 2863490 GATTGACACTGTGTT CCAATCCATGC CACCTGA GCATGGATTGG TATTCATGGCCAATA TERM 3789 2863787 - 2863803 + H 72 -2.9 -4.91712 | opp_overlap 2863787, overlap 2863788 ATTCTGTTGAATAAG CCCATGT CCT ACGTGGA TTTTTGTACCTTGGC CJA_2499 2864096 - 2864773 + | putative protein encoding reversible inactivation of extracellular polysaccharide production CJA_2498 2867180 - 2864733 - | hypothetical protein TERM 3790 2866134 - 2866152 + g 76 -12.4 -2.52676 | opp_overlap 2866133 2866132 2866136 AACCGTCTGCAAATC CAGCGGGG TGC CCTCGCTG TGCATTCCCGCCATC TERM 3791 2866814 - 2866833 + g 80 -11.4 -3.40522 | TGAACGCCATGCTCG TGCCCGCT CCCA GGCGGGCA TTCTGCTGCGGCGAT TERM 3792 2867082 - 2867099 + g 72 -11.3 -2.52676 | opp_overlap 2867061 2867056 GGTGCCATTACCGGC GCGGTCA CCTA TGACCGC TGCATTGGCCACCTC CJA_2500 2867606 - 2867250 - | hypothetical protein CJA_2501 2868397 - 2867612 - | hypothetical protein CJA_2502 2874888 - 2868406 - | hypothetical protein TERM 3793 2868798 - 2868787 - G 70 -4.4 -4.52589 | CCTGTCCAGAGAAAA TTGC TTGG GCAA TACATATTCACTGCC TERM 3794 2870323 - 2870341 + g 76 -12.4 -2.52676 | opp_overlap 2870322 2870321 2870325 AACCGTCTGCAAATC CAGCGGGG TGC CCTCGCTG TGCATTCCCGCCATC TERM 3795 2871003 - 2871022 + g 80 -11.4 -3.40522 | TGAACGCCATGCTCG TGCCCGCT CCCA GGCGGGCA TTCTGCTGCGGCGAT TERM 3796 2871271 - 2871288 + g 72 -11.3 -2.52676 | opp_overlap 2871245 2871241 GGTGCCATTGCCGGC GCGGTCA CCTA TGACCGC TGCATTGGCCACCTC TERM 3797 2872899 - 2872881 - G 72 -10.2 -3.31144 | CGCTGATTTTCAGAA CCTGGGTG TTA CGCCCAGG GGGAATAGGGAAATT TERM 3798 2873682 - 2873672 - G 75 -5.4 -4.65916 | GCCAGCCGAACAAAA TCAG GCT CTGA ATCCGTTGCGCCAGA TERM 3799 2875169 - 2875154 - H 85 -5.4 -5.4433 | opp_overlap 2875154 2875155, overlap 2875155 ATATATAAATAAAAA CGACAG TCTC CTGTCA TTTTGTCACAAAAAT CJA_2503 2876411 - 2876551 + | hypothetical protein TERM 3800 2877405 - 2877430 + T 100 -11.9 -4.88067 | opp_overlap 2877405 ACCTAAAAACAAAAA CGGCAAGGGAT TTTC ATCACTTGCCG TTTTTATCAATCACT TERM 3801 2877430 - 2877405 - T 100 -11.9 -5.63236 | opp_overlap 2877405 ACCTAAAAACAAAAA CGGCAAGGGAT TTTC ATCACTTGCCG TTTTTATCAATCACT CJA_2504 2878516 - 2877455 - | hypothetical protein CJA_2505 2880573 - 2878537 - | hypothetical protein TERM 3802 2880576 - 2880588 + r 74 -6.9 -4.28487 | overlap 2880577 GTATATCCGCCATAT TGGGC AAG GCCCG TTTACTTTTCTCCTG TERM 3803 2880757 - 2880792 + r 100 -12 -4.59773 | opp_overlap 2880762, overlap 2880762 CTATTCATTAAAAAC AAAAACGGCAAGGGAT TGCC ATCACTTGCCGTTTTC TTTTTCAAGATAAGA TERM 3804 2880787 - 2880762 - R 100 -11.9 -5.65496 | opp_overlap 2880762 2880757 CATTAAAAACAAAAA CGGCAAGGGAT TGCC ATCACTTGCCG TTTTCTTTTTCAAGA TERM 3805 2880762 - 2880787 + r 100 -11.9 -5.26119 | opp_overlap 2880762, overlap 2880757 CATTAAAAACAAAAA CGGCAAGGGAT TGCC ATCACTTGCCG TTTTCTTTTTCAAGA CJA_2506 2881909 - 2880815 - | hypothetical protein TERM 3806 2881248 - 2881266 + g 74 -7.5 -4.09285 | overlap 2881241 AAATGATCCATTGCA CCATCTT CTGCA AAGATGG TTTCATGTTTTACTA CJA_2507 2883936 - 2881927 - | hypothetical protein TERM 3807 2884014 - 2884038 + r 80 -6.4 -4.88067 | gap 1, opp_overlap 2884014 2884015, overlap 2884015 CACCCAAAACAAAAA CGGCGAG-GGT TTTC ACCACTCGCCA TTTTTATCAATCACT TERM 3808 2884038 - 2884014 - R 100 -8.6 -5.48213 | gap 1, opp_overlap 2884014 2884015, overlap 2884015 CACCCAAAACAAAAA CGGCGAG-GGT TTTC ACCACTCGCCA TTTTTATCAATCACT TERM 3809 2884037 - 2884015 - R 80 -9.9 -3.87301 | gap 1, opp_overlap 2884014 2884015, overlap 2884014 ACCCAAAACAAAAAC GGCGAG-GGT TTTC ACCACTCGCC ATTTTTATCAATCAC TERM 3810 2884015 - 2884037 + r 75 -9.9 -3.52117 | gap 1, opp_overlap 2884015 2884014, overlap 2884014 ACCCAAAACAAAAAC GGCGAG-GGT TTTC ACCACTCGCC ATTTTTATCAATCAC CJA_2508 2885115 - 2884063 - | hypothetical protein CJA_2509 2890106 - 2885136 - | hypothetical protein TERM 3811 2886180 - 2886170 - G 70 -6.8 -4.11623 | opp_overlap 2886170 TATTAGGAAATGAAA TCCC GTT GGGA TAATTAACTACCCCG TERM 3812 2887018 - 2886985 - G 74 -6 -4.56314 | overlap 2886979 GGAATATAACGAAAA CGCAAACGCATACC TCCCAG GGTACGCACTTTCG TTTCAGGTGCAGCCA TERM 3813 2887305 - 2887273 - G 72 -6.3 -4.33417 | CGTATCGACAACAAA TCCGTCGGATCCAGA TAA TCTATATGCGACAGA TTATCAAAACGGATC TERM 3814 2887471 - 2887491 + g 70 -9.7 -3.21276 | overlap 2887469 2887475 TTACTGCGTATCGTG GGAATGCGA CCC TCGCCTTCC TGTTCTACCAACAAC TERM 3815 2888972 - 2888943 - G 77 -8.7 -4.03234 | overlap 2888945 TCGCCCTGATAGAAA CATAACATCAACC TTAA GGTCGACGTTATA AAAATACGTGGATAA TERM 3816 2888970 - 2888945 - G 73 -9.1 -3.61232 | overlap 2888943 GCCCTGATAGAAACA TAACATCAACC TTAA GGTCGACGTTA TAAAAATACGTGGAT TERM 3817 2889050 - 2889037 - G 81 -4.5 -5.055 | GTAAGTCCTAAAAAA CCACC AACC GGTAG TGGATCGTAGCAAAA TERM 3818 2889368 - 2889358 - G 91 -3.2 -5.52384 | GCGTCACCAAAAAAA CCCA CTC TAGG CGCAATATTATTCTC CJA_2510 2890396 - 2890139 - | hypothetical protein TERM 3819 2890540 - 2890575 + rH 100 -10.6 -5.60993 | opp_overlap 2890540 GCAGCCATAATGAAA CACCAGAAGGCTGT ATAAATCA ACAGTTTTCTGGTG TTTTTTTATACGCGG CJA_2511 2891596 - 2891504 - | hypothetical protein CJA_2512 2890573 - 2891562 + | Integrase core domain protein TERM 3820 2891687 - 2891648 - TR 100 -13 -4.44187 | overlap 2891644 ACACAGAAATAGAAA GATTTTTCCCCCGCCACC CTTC AGCGGCAGAGAAAAAATC AGAAATAACGAAAAA CJA_2513 2892126 - 2891767 - | hypothetical protein TERM 3821 2892206 - 2892243 + r 71 -9.9 -3.22475 | opp_overlap 2892206 2892212, overlap 2892211 2892212 CTCAATACTTAAAAA CAAAAACGGCAAGGGAT TTTC ATCACTTGCCGCTTCTG TCTTATCAAACTGAA TERM 3822 2892243 - 2892206 - R 100 -14.3 -4.74706 | opp_overlap 2892206 2892211 2892212, overlap 2892212 CTCAATACTTAAAAA CAAAAACGGCAAGGGAT TTTC ATCACTTGCCGCTTCTG TCTTATCAAACTGAA TERM 3823 2892211 - 2892238 + r 72 -8.4 -3.72788 | opp_overlap 2892206 2892212, overlap 2892206 2892212 TACTTAAAAACAAAA ACGGCAAGGGAT TTTC ATCACTTGCCGC TTCTGTCTTATCAAA TERM 3824 2892212 - 2892237 + r 77 -11.9 -2.83191 | opp_overlap 2892206 2892212, overlap 2892211 2892206 ACTTAAAAACAAAAA CGGCAAGGGAT TTTC ATCACTTGCCG CTTCTGTCTTATCAA TERM 3825 2892237 - 2892212 - R 100 -11.9 -5.63236 | opp_overlap 2892212 2892211 2892206, overlap 2892206 ACTTAAAAACAAAAA CGGCAAGGGAT TTTC ATCACTTGCCG CTTCTGTCTTATCAA CJA_2514 2893191 - 2892262 - | hypothetical protein CJA_2515 2894352 - 2893342 - | hypothetical protein CJA_2516 2898176 - 2894349 - | hypothetical protein TERM 3826 2895395 - 2895407 + g 72 -6.9 -4.28487 | overlap 2895396 GTATATCCGCCATAT TGGGC AAA GCCCG TTTACTTTTCTCCTG TERM 3827 2897231 - 2897202 - G 77 -8.7 -4.03234 | overlap 2897204 TCGCCCTGATAGAAA CATAACATCAACC TTAA GGTCGACGTTATA AAAATACGTGGACAA TERM 3828 2897229 - 2897204 - G 73 -9.1 -3.61232 | overlap 2897202 GCCCTGATAGAAACA TAACATCAACC TTAA GGTCGACGTTA TAAAAATACGTGGAC CJA_2517 2904049 - 2898245 - | Thrombospondin type 3 repeat family TERM 3829 2903522 - 2903512 - G 72 -4.6 -4.70659 | overlap 2903517 CCTTATAGGGAAAAA GGAC ATT GCCC TTAACGTAAAGGCGA CJA_2518 2905040 - 2904186 - | putative peptidyl-prolyl cis-trans isomerase D CJA_2519 2905853 - 2905041 - | peptidyl-prolyl cis-trans isomerase D CJA_2520 2944154 - 2905923 - | IPT/TIG domain protein TERM 3830 2915825 - 2915807 - G 78 -8.8 -4.23723 | overlap 2915810 CAATATTATTGAAAA TCACCTGC ACG GCAGGGGA TGCAGACTGGTGCAG TERM 3831 2923359 - 2923389 + g 82 -9.6 -4.24397 | AGCACCCGCCACTTT CGCACCGTCCAGCG TAA CGCTGAACAGTTCG TTTCTATTGGCTTGT TERM 3832 2925906 - 2925890 - G 72 -6.5 -4.32067 | overlap 2925901 TACCTGAGAAAACAA TGGGGGT ATA ACCCACA GGTGGATTCAGTTCA TERM 3833 2927485 - 2927518 + g 74 -5.9 -4.46212 | ATCGCCCTGCCACCA CCAGCCTGTAGCTTG TTAT CAAATAACAGGCGGG TTTTCTGCTCAGGGC TERM 3834 2929561 - 2929579 + g 71 -3 -4.7329 | opp_overlap 2929552 GAATAAGCGGTAGCC GCCACAAC CTG GATATGGC TTTTTCCGTAGTTTT TERM 3835 2930157 - 2930173 + g 72 -4.3 -4.61231 | opp_overlap 2930157 CCCCTTGGCAAACGA CGCCTCT AAT GGAAGCG TTTTTACCAGTGTGG TERM 3836 2930294 - 2930283 - G 70 -5.8 -4.16842 | opp_overlap 2930285, overlap 2930285 CGCAGCGCTAATAAA CAGG CGAT CCTG GCCATTCTCAAAGAA TERM 3837 2932774 - 2932764 - G 70 -6.8 -4.06419 | opp_overlap 2932766 CTTGCCCATAAATAA TGCC TGG GGCA GTATGAACCTGCGCC TERM 3838 2933846 - 2933860 + g 77 -2.8 -5.03314 | GGACAGTTGAGTCCG TTGTTG GAT CATCAA TTTTTTCCAGGTCGA TERM 3839 2935019 - 2935032 + g 71 -2.3 -5.0133 | opp_overlap 2935019 CGACACGGGACACTA TGCGC AAGC GCTCA TTTTTTGCAGCACTG TERM 3840 2939407 - 2939391 - G 72 -4.3 -4.61566 | opp_overlap 2939391 CTGCAAACGATAAAA TGCCAGG GCT CCCTGCA TGGGTTCTCCATCAG TERM 3841 2939966 - 2939942 - G 81 -10.7 -3.61398 | opp_overlap 2939962 TTGTTGCGGCAAGAA CCGAACCCAAG GTT CCCGGATTCGG AATACGAATTTCTTC TERM 3842 2940783 - 2940769 - G 86 -12.8 -3.53174 | opp_overlap 2940768 2940758, overlap 2940767 ATAGGCGCAGAAATA CCCGCC AAA GGCGGG GTCTGGTCGCGCTTT TERM 3843 2942882 - 2942910 + g 86 -3.7 -5.45726 | TTGAAGAGGGGATCA CCGACTGGGCT TTAACCT GGCCCAACCGG TTTTTTTCGAGTATC TERM 3844 2943068 - 2943055 - G 76 -8.1 -4.27316 | CGGCTTAATTCAAAA GCCTC ATCC GAGGC AAAATCCTTAAAGCC TERM 3845 2943330 - 2943301 - G 76 -7.8 -4.27316 | opp_overlap 2943306, overlap 2943302 CCCCGGAACTGAAAA TCAATCGCCGGT CTCAAT ACCGGCGTTTGG AGGATATTGTTGATT TERM 3846 2943329 - 2943302 - G 77 -11.3 -3.16068 | opp_overlap 2943306, overlap 2943301 CCCGGAACTGAAAAT CAATCGCCGGT CTCAAT ACCGGCGTTTG GAGGATATTGTTGAT TERM 3847 2943306 - 2943325 + g 81 -10.7 -3.57883 | opp_overlap 2943302 2943301 GAACTGAAAATCAAT CGCCGGT CTCAAT ACCGGCG TTTGGAGGATATTGT TERM 3848 2943337 - 2943349 + g 74 -2 -5.02606 | opp_overlap 2943337 GGCGTTTGGAGGATA TTGT TGATT ACAA TTTTGTTATTTGATA TERM 3849 2943580 - 2943593 + g 77 -3.1 -5.03145 | CTGACCATTTGATCT GTCTT TGCA AAGGC TTTTTTACGCGCTTC TERM 3850 2944840 - 2944859 + r 72 -4.9 -4.70169 | opp_overlap 2944842, overlap 2944842 ATTTATTAATAAAAA AACCCGC CATATA GCGGGTC TTTTATTAAATCTCA TERM 3851 2944857 - 2944842 - R 100 -8.2 -5.84381 | opp_overlap 2944842 2944840 TTATTAATAAAAAAA CCCGCC ATAT AGCGGG TCTTTTATTAAATCT TERM 3852 2944842 - 2944857 + r 71 -7.5 -3.96156 | opp_overlap 2944842, overlap 2944840 TTATTAATAAAAAAA CCCGC CATATA GCGGG TCTTTTATTAAATCT fadL 2946210 - 2944879 - | Putative fatty acid transport system, membrane protein TERM 3853 2946890 - 2946862 - R 81 -4.8 -5.1101 | gap 1 GGATTAGCCAAAAAA TGCTT-ATTTACT CTTC AGCAAATCAAGCA AATGCTCCAAATCAC CJA_2523 2947227 - 2946865 - | transcription regulator protein ihfA 2947516 - 2947208 - | integration host factor, alpha subunit TERM 3854 2947322 - 2947335 + g 78 -8.1 -4.37658 | GGTCTTTGGGTTGCG GCCAG GTCT CTGGC TTTTGTCACGCAATT pheT 2949922 - 2947529 - | phenylalanyl-tRNA synthetase, beta subunit pheS 2951049 - 2950036 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 3855 2950383 - 2950399 + g 71 -2.9 -4.82901 | opp_overlap 2950385, overlap 2950385 CCATAGTGCCTTTCA AATCGGC AAA GCTGATA TTTTTATCCACCACC TERM 3856 2950488 - 2950503 + g 100 -2.5 -5.80951 | opp_overlap 2950489, overlap 2950489 CACGACCAGGGCAAA TCACC CGAATA GGTGG TTTTTTATTTTCCAT TERM 3857 2950896 - 2950918 + g 71 -3.4 -4.75372 | gap 1 CGGCCGCCGGGCGCT CTTCGGGCG ACAAAC CGC-CGAGG TTTTTCATCAATGCT TERM 3858 2951145 - 2951135 - R 79 -2.4 -5.49234 | ATATTCAATAAAAAA GCCG CTC CTGC GCGTCCGGCGCTCGC TERM 3859 2951190 - 2951213 + r 91 -11 -4.26903 | opp_overlap 2951190 CCTGAATATAAAAAA GGGGAAGAAC CAAA GCTCTTCCCC TTTTCATCGCATCAC TERM 3860 2951213 - 2951190 - R 100 -13.2 -5.47159 | opp_overlap 2951190 CCTGAATATAAAAAA GGGGAAGAAC CAAA GCTCTTCCCC TTTTCATCGCATCAC rplT 2951621 - 2951262 - | ribosomal protein L20 TERM 3861 2951299 - 2951312 + g 74 -8.1 -4.0162 | opp_overlap 2951298 GCCTTCGCAACAACG GCAGC AAAT GCTGC TTTGTCGTATACAGC rpmI 2951854 - 2951657 - | ribosomal protein L35 infC 2952346 - 2951915 - | initiation factor 3 thrS 2954436 - 2952508 - | threonyl-tRNA synthetase TERM 3862 2953776 - 2953796 + g 74 -3.2 -4.90079 | opp_overlap 2953772, overlap 2953783 CATCGGCAAAGGCAG TGCCGTAG ATGCG CTGCAGCA TTTTGTTGTTGGAAT TERM 3863 2954530 - 2954507 - R 100 -7.4 -5.5604 | GCAATCAATAAAAAA GCCCACAC CTACGATT GTGCGGGC CGGCGAGTATAGTGG TERM 3864 2954571 - 2954557 - R 80 -10 -3.93288 | GTGGAGCGAAGGAAA TGGAGG CAA CCTCCA AATAGCCATCAATCC TERM 3865 2954629 - 2954652 + r 71 -7.4 -3.89881 | opp_overlap 2954648, overlap 2954648 2954651 TGAGGTAGCAGGTTA CCCGGTGTGT TAAT ACACATCGCG TTTATAGCGATTACT CJA_2531 2957277 - 2954638 - | putative sulfite reductase, flavoprotein component TERM 3866 2956025 - 2956048 + g 77 -3.1 -5.06414 | gap 1, overlap 2956024 TGCAAACTGGCCACC GCAGCAGCTG ATTGC CTGCTG-TGC TTTTTCTTCCGGCGA CJA_2532 2958759 - 2957362 - | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family TERM 3867 2958541 - 2958564 + g 71 -9.6 -3.51232 | opp_overlap 2958528 CAGCAAATCCGGGCT TTGCTGGTCA GCCA TGTCCAGCAA TTGATTTAAGGCCGG CJA_2533 2960698 - 2958764 - | macrolide ABC efflux protein TERM 3868 2959560 - 2959542 - G 90 -4.5 -5.40072 | overlap 2959544 TCTTCGGTAAAAAAA GTCCCTT CCGCC AAGGGCC ACTTGCGCGCCATGG CJA_2534 2962164 - 2960698 - | efflux transporter, RND family, MFP subunit cysJ 2963767 - 2962202 - | sulfite reductase (NADPH) flavoprotein alpha-component CJA_2536 2964715 - 2963897 - | hypothetical protein CJA_2537 2965283 - 2964747 - | hypothetical protein TERM 3869 2964791 - 2964804 + g 74 -8.1 -4.12188 | CCAACTCGCTGCTGC CCTGC CCCT GCAGG TTTTGCGCATCCTGC CJA_2538 2965892 - 2965293 - | plasmolipin TERM 3870 2965672 - 2965688 + g 77 -2.9 -5.10154 | overlap 2965666 AACCACTGGCCCACA GCCTC AGGCAAA GGGGC TTTTTCGTTTTCAAT cirA2 2968370 - 2965983 - | exogenous ferric siderophore TonB-dependent receptor TERM 3871 2967587 - 2967597 + g 77 -6.8 -4.48987 | ATGAAAGGCGTATAC CCAG CAC CTGG TTTTCATTATCGACA TERM 3872 2969438 - 2969411 - g 91 -9 -4.65895 | GTTTTCACGTAAAAA CCCCCAGGCCAG GTGG CTGGCGAGGGAG TTGGACAAAGGATTG CJA_2540 2968698 - 2969510 + | hypothetical protein CJA_2541 2970144 - 2969551 - | yhgI protein TERM 3873 2970843 - 2970857 + G 75 -7 -4.37092 | opp_overlap 2970833, overlap 2970845 ATTTACCGCCGCCAA CCCGGC CAA GCCGCG TTTTGTAGCAGGCGT TERM 3874 2971842 - 2971872 + G 70 -4.7 -4.56597 | CAAGCCCATTGTGAA CTCTATTTCGCTT AAAGA AGGCGAAGAGGAG TTTTTACACAAAGCC TERM 3875 2972407 - 2972389 - g 70 -3.8 -4.59109 | GATATCGCCGAAAAA TATCGCGG TGA CGGCAATA CAGGCGATAAAAAAG metH 2970439 - 2974182 + | methionine synthase CJA_2543 2974267 - 2974809 + | hypothetical protein TERM 3876 2974942 - 2974977 + G 80 -11.3 -3.37612 | gap 1 GGATGGCAACCCTAT GACCGG-GCAACCT GGTTGATGG AGGTTGCGCCGGTC TTGATTGCCATTCCC TERM 3877 2975095 - 2975112 + G 86 -10.5 -3.96148 | GGAGCCTATACCTAT GCCCGGG TTCC CCTGGGC TTTATGCTGCAGGAC CJA_2544 2974849 - 2975481 + | hypothetical protein CJA_2545 2975662 - 2976012 + | hypothetical protein CJA_2546 2976014 - 2977318 + | hypothetical protein CJA_2547 2977345 - 2978535 + | putative CvpA family protein CJA_2548 2979577 - 2978555 - | hypothetical protein TERM 3878 2978827 - 2978806 - G 84 -3.7 -5.30348 | gap 1, overlap 2978807 2978826 AGTGAATAATAAAAA CCTGCCCTTC ACG GAAGG-CAGC CATCCAACCGGCAGA TERM 3879 2978933 - 2978947 + g 74 -10 -3.46659 | opp_overlap 2978932 2978931 2978935, overlap 2978937 AACCAAGCGATAACC CAGCGA ACC TCGCTG TTCATTCTCCATATG CJA_2549 2979729 - 2980262 + | shikimate kinase TERM 3880 2980857 - 2980883 + F 71 -10.2 -2.63479 | opp_overlap 2980858 2980860, overlap 2980822 TGCACCTTGTGAACG AGACCTTTGTCG CAA TGACAAAGGTCG TGCTATACCCATGTT TERM 3881 2980882 - 2980858 - f 81 -13 -2.71364 | opp_overlap 2980822 2980857, overlap 2980860 GCACCTTGTGAACGA GACCTTTGTC GCAAT GACAAAGGTC GTGCTATACCCATGT CJA_2550 2980947 - 2982044 + | Alx protein TERM 3882 2982098 - 2982056 - T 100 -18.1 -2.72379 | gap 1, overlap 2982060 TTAATGTTGTAACCA TCAATCC-CCCCCATAAACA CCGG TGTTTATGGGGACGGATTGA ACCAGTGTAGTTGGC TERM 3883 2982094 - 2982060 - T 83 -13.1 -3.27298 | gap 1, overlap 2982056 TGTTGTAACCATCAA TCC-CCCCCATAAACA CCGG TGTTTATGGGGACGGA TTGAACCAGTGTAGT CJA_2551 2983524 - 2982082 - | siroheme synthase TERM 3884 2982223 - 2982235 + g 70 -6.9 -4.07568 | CAGTACACGCTGCTG GGGCG TAG TGCCC TTTTCAACCAGGGCC TERM 3885 2982572 - 2982552 - G 70 -4.8 -4.57073 | CACCGCGGCCAAAAA TAAAAGGA TCTCC TCCTTTCA AGCGCAGCACACGTT TERM 3886 2982995 - 2983011 + g 70 -5.8 -4.23892 | overlap 2982996 CTATCGCGCCAGCGA CTGGCT AACTG GGCCAG TTTTCCGTAATTAGC TERM 3887 2983544 - 2983505 - G 90 -14.6 -2.8882 | gap 1, opp_overlap 2983506 2983515 2983516, overlap 2983516 AGAAAAATAAAGGCA TCAATAAAAAA-GGTGGGC ATT GCCCACCCTTTTTTATTGT TTAACCGGAGCCAGG TERM 3888 2983506 - 2983543 + g 100 -18.1 -3.53012 | gap 1, opp_overlap 2983505 2983516, overlap 2983515 2983516 GAAAAATAAAGGCAT CAATAAAAAA-GGTGGGC ATT GCCCACCCTTTTTTATTG TTTAACCGGAGCCAG TERM 3889 2983515 - 2983533 + g 100 -10.2 -5.72254 | opp_overlap 2983505 2983516, overlap 2983506 2983516 AGGCATCAATAAAAA AGGTGGGC ATT GCCCACCC TTTTTTATTGTTTAA TERM 3890 2983516 - 2983532 + g 100 -13.7 -4.00912 | opp_overlap 2983505 2983516, overlap 2983515 2983506 GGCATCAATAAAAAA GGTGGGC ATT GCCCACC CTTTTTTATTGTTTA TERM 3891 2983532 - 2983516 - G 100 -13.7 -5.5112 | opp_overlap 2983516 2983515 2983506, overlap 2983505 GGCATCAATAAAAAA GGTGGGC ATT GCCCACC CTTTTTTATTGTTTA serS 2984824 - 2983538 - | seryl-tRNA synthetase TERM 3892 2984895 - 2984867 - R 76 -2.5 -5.41746 | gap 1 AAGTTGTTAAAAAAA CTTTTG-CGTCA ACGCCA TGCCGACAAAAG CCATTAGCAAGCCCA crcB 2985232 - 2984858 - | crcB protein TERM 3893 2984983 - 2984969 - G 72 -10 -3.28791 | ACCGCTCTGCCATAA CTGGAG AAT CTCCAG GGAAAATGCCGAGAA CJA_2554 2986594 - 2985251 - | ATPase, AAA family domain protein TERM 3894 2985603 - 2985586 - G 81 -9.1 -4.05033 | opp_overlap 2985597 CGCAGGCCAGATAAA CCACCGC CTGG GCGATGG CCAGCTCCCCCTCCG TERM 3895 2985987 - 2985999 + g 71 -9.1 -3.46914 | overlap 2985985 GCATCACCATCTGCC GCCTG GGC CAGGC TGTTTAATACCTCAT lolA 2987224 - 2986601 - | outer membrane lipoprotein carrier protein LolA ftsK 2989648 - 2987297 - | DNA translocase ftsK TERM 3896 2989553 - 2989543 - G 81 -6.8 -4.70887 | opp_overlap 2989548 2989549, overlap 2989544 2989547 CCAGCAATAAATAAA GGCA CAG TGCC CCCAATCCTATGAGG CJA_2557 2989952 - 2989728 - | hypothetical protein TERM 3897 2990376 - 2990386 + G 75 -4.6 -4.8622 | ATTACTCTACTCGAT CTGG TTG CCGG TTTTTCCTTAAACAG TERM 3898 2990747 - 2990759 + G 71 -2.6 -4.96501 | overlap 2990756 AGCTTTTTTTTATCG CCTG CTAAC CGGG TTTATTTTTATGAGC TERM 3899 2990897 - 2990873 - g 74 -2.8 -4.98531 | overlap 2990875 2990876 CCTGCAAATCAAAAA TACCGCATTG CGAAT CAAGGCGACA GTGAGCACCTTGAAT CJA_2558 2989977 - 2992271 + | signal-transducing histidine kinase CJA_2559 2992274 - 2992732 + | two-component response regulator CJA_2560 2992758 - 2994521 + | response regulator TERM 3900 2994844 - 2994829 - g 74 -6 -4.55491 | overlap 2994813 2994831 CACCGAAGTAGAAAA CTGGCC CGGT GGCCCG CATGACCTGCAAGGT trxB 2994674 - 2995621 + | thioredoxin-disulfide reductase TERM 3901 2995674 - 2995644 - T 100 -17.1 -3.18264 | opp_overlap 2995644 2995651, overlap 2995651 TGTTGTATCCATCAA TGAAAAAGCCGCT GTTAT AGCGGCTTTTTCA TTATGCAGGAAGCTG TERM 3902 2995644 - 2995674 + T 100 -17.8 -3.28924 | opp_overlap 2995644 2995651, overlap 2995651 TGTTGTATCCATCAA TGAAAAAGCCGCTG TTA TAGCGGCTTTTTCA TTATGCAGGAAGCTG TERM 3903 2995651 - 2995667 + T 100 -10.1 -4.93365 | opp_overlap 2995644 2995651, overlap 2995644 TCCATCAATGAAAAA GCCGCTG TTA TAGCGGC TTTTTCATTATGCAG TERM 3904 2995667 - 2995651 - T 93 -9.4 -4.90266 | opp_overlap 2995651 2995644, overlap 2995644 TCCATCAATGAAAAA GCCGCT GTTAT AGCGGC TTTTTCATTATGCAG CJA_2562 2997174 - 2995675 - | SpoVR like family protein TERM 3905 2996817 - 2996869 + g 70 -3.5 -4.67982 | gap 1, opp_overlap 2996801 2996819 2996820 2996822 2996831, overlap 2996819 2996820 TCCCCTTAAAAAAGG AATTATGGCCATAACAGGCATGGG CGATCA CCAATGCCTGC-ATAGCCATAGTG TTTTCTTCCATCAGA TERM 3906 2996867 - 2996819 - G 78 -9 -3.93166 | gap 1, opp_overlap 2996819 2996817 2996820, overlap 2996820 2996822 2996831 CCCTTAAAAAAGGAA TTATGGCCATAACAGGCATGGGC GATC ACCAATGCCTG-CATAGCCATAG TGTTTTCTTCCATCA TERM 3907 2996866 - 2996820 - G 78 -12.5 -2.95177 | gap 1, opp_overlap 2996820 2996819 2996817, overlap 2996819 2996822 2996831 CCTTAAAAAAGGAAT TATGGCCATAACAGGCATGGGC GATC ACCAATGCCTG-CATAGCCATA GTGTTTTCTTCCATC TERM 3908 2996864 - 2996822 - G 72 -10.7 -3.0166 | gap 1, opp_overlap 2996820 2996819 2996817, overlap 2996820 2996819 2996831 TTAAAAAAGGAATTA TGGCCATAACAGGCATGGGC GATC ACCAATGCCTG-CATAGCCA TAGTGTTTTCTTCCA TERM 3909 2996856 - 2996831 - G 72 -9.7 -3.32268 | opp_overlap 2996820 2996819 2996817, overlap 2996822 2996820 2996819 GAATTATGGCCATAA CAGGCATGGGC GATC ACCAATGCCTG CATAGCCATAGTGTT CJA_2563 2998445 - 2997171 - | hypothetical protein TERM 3910 2997643 - 2997633 - G 100 -6.8 -5.83211 | opp_overlap 2997632 2997640 GAGCAAAATAAAAAA TCGC TTG GCGA CATCTTTTGTGGCTT TERM 3911 2998254 - 2998237 - G 75 -7 -4.30844 | ACTCGATTATTAAAA CCACCA TCACCG TGGTGG ATAACAGGCTCATTG TERM 3912 2998383 - 2998402 + g 83 -6.4 -4.90079 | opp_overlap 2998383, overlap 2998378 ATAGCGGCGTAAAAA GCGCTG ACGATTTA CAGCGC TTTTGTTCTTGGCAT TERM 3913 2998402 - 2998383 - G 74 -6.4 -4.57837 | opp_overlap 2998383 2998378 ATAGCGGCGTAAAAA GCGCTG ACGATTTA CAGCGC TTTTGTTCTTGGCAT CJA_2564 3000434 - 2998512 - | protein kinase TERM 3914 2999366 - 2999349 - G 72 -4.9 -4.5954 | gap 1 TGACAGTACAGAAAA CTGCGCTA ACA TA-CGCAG AGTATCAGGCGCACA TERM 3915 2999768 - 2999793 + g 81 -8.3 -4.34402 | opp_overlap 2999771 GGATATCAACTTTAC CAACCAGGGAA GAAA TATCCTGGTTG TTTTCATCTCCCGGC TERM 3916 3000547 - 3000568 + H 72 -5.9 -4.54301 | CTGTTTGTATTCCTT GTTGGCA TAAATAAT TGCCAAC TTTCTTACTTTTTTG aat 3000806 - 3001513 + | leucyl/phenylalanyl-tRNA--protein transferase TERM 3917 3001744 - 3001761 + G 70 -6.3 -4.15044 | gap 1, overlap 3001747 CCAGGCTTGTGTCTC TTG-CCGG ATA CCGGTCAA TTTGTTCAAACCCAC TERM 3918 3001823 - 3001807 - g 85 -2.9 -5.40072 | overlap 3001808 CTGCTGGCAAAAAAA CCAGGAT CTC ACCCTGC ACCTGGTGAGCACCA TERM 3919 3002126 - 3002116 - g 78 -8.2 -4.2349 | opp_overlap 3002116 GGCGCAGATCGAAAA GGCC CGC GGCC TTGGCCTTGACTATC CJA_2566 3001538 - 3002245 + | arginine-tRNA-protein transferase-related protein infA 3002383 - 3002601 + | translation initiation factor IF-1 TERM 3920 3002651 - 3002621 - T 100 -17.1 -3.96327 | opp_overlap 3002629, overlap 3002629 ATCGGGTATCAGAAA CAAAAAAAGCCGC ACTGA GCGGCTTTTTTTG TGGGACCTTGATCAA TERM 3921 3002629 - 3002643 + T 100 -8.5 -5.60993 | opp_overlap 3002621 3002629 TCAGAAACAAAAAAA GCCGC ACTGA GCGGC TTTTTTTGTGGGACC TERM 3922 3002643 - 3002629 - T 100 -8.5 -6.02919 | opp_overlap 3002629, overlap 3002621 TCAGAAACAAAAAAA GCCGC ACTGA GCGGC TTTTTTTGTGGGACC TERM 3923 3002675 - 3002687 + T 83 -9.1 -4.30014 | opp_overlap 3002674 3002673 TGATCAAAAATCACG CAGGC TGA GCCTG TTTTGCCTTAATAAG clpA 3004967 - 3002670 - | ATP-binding protease component ClpA TERM 3924 3003968 - 3003950 - G 77 -6 -4.72272 | opp_overlap 3003949 GGTCTTTATCAAAAA TTCCACGA AAC TCCTGGAA CGTTGTAGACCCCAT TERM 3925 3004265 - 3004276 + g 70 -7.2 -4.07568 | GCTTAGCCAGCCCCT CGGC AATT GCCG TTTTACCCACACCGG TERM 3926 3005029 - 3005070 + r 93 -10.3 -4.54449 | AACTACTCTTTTTCC CCATCATCCACTGCT TCAATTTCACAC AGCAGTGGATGCTGG TTTTCTCTGGAATAT CJA_2569 3005393 - 3005016 - | ATP-dependent Clp protease adaptor protein clpS TERM 3927 3005521 - 3005509 - H 75 -2.6 -5.24129 | TTGTTGGATAAAAAA CGAC CCGAT GCCG CACAAAAATGTAACA TERM 3928 3005565 - 3005551 - g 93 -10 -4.56775 | opp_overlap 3005551 ATTTGTGCGCAAAAA CAGAGC CCC GCTCTG TTGTCAGTCCAACAC TERM 3929 3005551 - 3005565 + G 72 -10 -3.35679 | opp_overlap 3005551 ATTTGTGCGCAAAAA CAGAGC CCC GCTCTG TTGTCAGTCCAACAC cspD 3005538 - 3005915 + | cold-shock protein CspD TERM 3930 3006124 - 3006148 + T 79 -9.9 -3.66784 | opp_overlap 3006124 ATTATTAACAAAAAA GGCCCCGGG ATTTTGC CCCGGAGCC TTCTGTTACCACTGG TERM 3931 3006148 - 3006124 - T 100 -12.8 -5.52023 | opp_overlap 3006124 ATTATTAACAAAAAA GGCCCCGGGA TTTTG CCCCGGAGCC TTCTGTTACCACTGG TERM 3932 3006184 - 3006230 + T 72 -8.6 -3.67737 | TATCTTAACAATCAA GCCAGGTTTGCCAGTGCTGCAT TAA AGGTGGCACTGGGACGCATGGC TTTAGAGGTTTTATC CJA_2571 3008405 - 3006180 - | isocitrate dehydrogenase, NADP-dependent TERM 3933 3008476 - 3008464 - H 82 -6.9 -4.8622 | overlap 3008465 CCCGCCAACGAAAAA CGCCG ACA CGGCA GCCTCGTACAGAAAG CJA_2572 3008601 - 3009377 + | pseudouridylate synthase CJA_2573 3010680 - 3009424 - | HD domain protein TERM 3934 3009638 - 3009611 - G 71 -9.2 -3.5393 | ATGATTTTGGGCAAA TGCCGGAAACGA TTAT TGGTTTCCAGCA CAATCCCGATCAGGC TERM 3935 3010237 - 3010221 - G 78 -7.9 -4.42386 | GCGCCATCCACAAAA GCGCATC GGG GTTGCGC AACACACTGTGCACG CJA_2574 3011610 - 3010813 - | MazG family protein TERM 3936 3011186 - 3011202 + g 74 -6.5 -4.57073 | overlap 3011187 AGCGGGACGTCGGCA AGTGCAC CCT GTGCACC TTTTTCGGCACGCTC TERM 3937 3011187 - 3011201 + g 72 -10 -3.33922 | overlap 3011186 GCGGGACGTCGGCAA GTGCAC CCT GTGCAC CTTTTTCGGCACGCT CJA_2575 3013866 - 3011620 - | GTP pyrophosphokinase TERM 3938 3014001 - 3013977 - R 72 -2.7 -4.96848 | opp_overlap 3013981 CTGCTTATACAAAAA CAGCGCCATGG ATT CCACATGGCTG GTGTGCGGGAACATA rumA 3015416 - 3013959 - | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 3939 3014261 - 3014277 + g 76 -10.9 -3.32844 | TCTGGCTGAGATCCG CCTTGAG GAA CTCAAGG TTATCCAGTCCCAAA cysM 3016345 - 3015455 - | cysteine synthase B TERM 3940 3015757 - 3015770 + g 79 -2.3 -5.19879 | overlap 3015758 GCTGCAGTCCAATAA TCTGG ATAG CCGGG TTTTTCTCTTTCAGG TERM 3941 3018610 - 3018591 - g 70 -10 -3.14468 | overlap 3018594 GGTCATCACAGCCAA CAATGGCC CCCT GGCCATCG AGGCCTGCCAAACCG gacS 3016402 - 3019326 + | GacS recO 3020014 - 3019304 - | DNA repair protein RecO TERM 3942 3019479 - 3019469 - G 72 -6.8 -4.27584 | opp_overlap 3019469 ACCGGCAATCCAAAA GCGA GGA TCGC TATCTGCCGGGACGC era 3020955 - 3020044 - | GTP-binding protein Era rnc 3021665 - 3020988 - | ribonuclease III CJA_2582 3022128 - 3021658 - | hypothetical protein TERM 3943 3022020 - 3022010 - G 81 -4.6 -5.11254 | AATAACAAAAAGAAA CCGG CAA CCAG GATAATCAGCATCCA TERM 3944 3022078 - 3022052 - G 70 -6.5 -4.15565 | gap 1 TGGATCATGCTAAAA CCG-CGCTGCCC GGCC AGGTAGCGGCGG TTCAACCAGGCTGCA lepB 3023122 - 3022235 - | signal peptidase I TERM 3945 3022771 - 3022755 - G 75 -4.3 -4.84492 | overlap 3022756 TTAACCAGAATAAAA TCGCCCA CCT TGAGCGT GGGAATCATGGAGCC lepA 3024939 - 3023140 - | GTP-binding protein LepA TERM 3946 3023556 - 3023587 + g 80 -11.6 -3.34344 | CACGGCTGACGGATT TGAGGCGGTCAAAG AAAT CTGTGACCACCTCA TTCATTGGCAACTCA TERM 3947 3023763 - 3023747 - G 70 -10.1 -3.14602 | opp_overlap 3023747, overlap 3023745 CGCATTTCATTAATA CTGCCCG GAT CAGGCAG TTTGGACGGGTTATC TERM 3948 3024085 - 3024141 + g 88 -11.5 -3.72576 | overlap 3024087 GCCCGCCAAAGCTTC CACATCCGGGGTTTGCGCATGGGTGAT GGT ATCGCCCACGGGCGCACCGTGGATGTC TTTAATACCGGCAAC TERM 3949 3024087 - 3024139 + g 95 -14.1 -3.44848 | overlap 3024085 CCGCCAAAGCTTCCA CATCCGGGGTTTGCGCATGGGTGAT GGT ATCGCCCACGGGCGCACCGTGGATG TCTTTAATACCGGCA TERM 3950 3024511 - 3024533 + g 75 -5.4 -4.67982 | overlap 3024512 CTGGGCTACACGATC CGGCTCTGCC TGG GGCAGGTCCA TTTTGTTGAGTACCG TERM 3951 3024989 - 3024972 - H 83 -4 -5.30575 | opp_overlap 3024987, overlap 3024974 TAAAAATGGAAAAAA GTCCCC TGAATG GGGGGC GGCAAGAATGGCCGG TERM 3952 3025081 - 3025067 - g 88 -12.8 -3.58343 | CGGATCAGCGCCAAA CCGGGC AAG GCCCGG AAACAACAGCGCCGG TERM 3953 3025112 - 3025088 - g 100 -18.6 -3.91488 | AAGGCCCGGAAACAA CAGCGCCGGC TATTT GCCGGCGCTG GCGCAACAAAACCTA CJA_2586 3024997 - 3025149 + | hypothetical protein mucD 3026548 - 3025142 - | MucD CJA_2587 3026543 - 3026695 + | hypothetical protein CJA_2588 3027876 - 3026698 - | putative sodium-type flagellar protein MotY TERM 3954 3028806 - 3028795 - g 85 -7.2 -4.8277 | AAAGACAAAAAAGAA GCCG CGTG CGGC TGTGCGGGCAGCTAT pyrC 3027997 - 3029070 + | dihydroorotase, homodimeric type TERM 3955 3029112 - 3029125 + G 79 -3.7 -5.06103 | overlap 3029123 CACTCACCGCTGGCC CAGCG ATTC CGCGG TTTTTTACCCGTTAT rnt 3029067 - 3029738 + | ribonuclease T TERM 3956 3030014 - 3029999 - g 91 -3.2 -5.5353 | overlap 3030009 CACATGAACAAAAAA CACTGG AATA CCATTG TCGTCGATGGCACGG CJA_2591 3029771 - 3030145 + | hypothetical protein CJA_2592 3030632 - 3030159 - | MaoC-like domain protein TERM 3957 3030405 - 3030393 - G 70 -10.5 -2.70354 | overlap 3030389 3030390 GCTGCGATAAACCGA GCCGG GTC CCGGC AGGCATGTGGCAATA TERM 3958 3031081 - 3031071 - g 75 -5.4 -4.60041 | AGCGAGTGGCAAAAA TCCA TCA TGGA ATCCGCAAAACGCTT CJA_2593 3030798 - 3031616 + | universal stress protein family TERM 3959 3031669 - 3031642 - T 100 -20 -5.44721 | opp_overlap 3031642 ATGACGCTAAAAAAA CAAAGGCCGGTG CAAA CACCGGCCTTTG TTTTTTTACAGTTGC TERM 3960 3031642 - 3031669 + T 100 -20 -5.47399 | opp_overlap 3031642 ATGACGCTAAAAAAA CAAAGGCCGGTG CAAA CACCGGCCTTTG TTTTTTTACAGTTGC CJA_2594 3032405 - 3031713 - | putative lipoprotein TERM 3961 3032187 - 3032201 + g 91 -5.7 -5.37345 | GTTTTCCATGTCCAA CTGCT CAACC AGCAG TTTTTTGTACTTGGC TERM 3962 3032276 - 3032291 + g 82 -3.2 -5.27923 | overlap 3032267 3032278 TTTCAACCTGGCTCA GCCC CTGCTCCT GGGC TTTTTTCTGGGCTTC CJA_2595 3032438 - 3032536 + | hypothetical protein TERM 3963 3032639 - 3032595 - T 100 -15.2 -3.78775 | gap 1, opp_overlap 3032606 3032610, overlap 3032596 3032606 3032610 CTTTGTAGCACTAAA TGCCCCAATAACAAAGGAGGC ATTC GCCTCCTTTGTTAT-GGGTCC GGGATTCATGCTATC TERM 3964 3032638 - 3032596 - T 100 -18.7 -2.87051 | gap 1, opp_overlap 3032606 3032610, overlap 3032595 3032606 3032610 TTTGTAGCACTAAAT GCCCCAATAACAAAGGAGGC ATTC GCCTCCTTTGTTAT-GGGTC CGGGATTCATGCTAT TERM 3965 3032606 - 3032629 + T 100 -15.4 -3.35798 | opp_overlap 3032596 3032595 3032606 3032610, overlap 3032610 TAAATGCCCCAATAA CAAAGGAGGC ATTC GCCTCCTTTG TTATGGGTCCGGGAT TERM 3966 3032629 - 3032606 - T 100 -15.4 -3.64283 | opp_overlap 3032606 3032610, overlap 3032596 3032595 3032610 TAAATGCCCCAATAA CAAAGGAGGC ATTC GCCTCCTTTG TTATGGGTCCGGGAT TERM 3967 3032625 - 3032610 - T 93 -10.4 -4.44667 | opp_overlap 3032610 3032606, overlap 3032606 3032596 3032595 TGCCCCAATAACAAA GGAGGC ATTC GCCTCC TTTGTTATGGGTCCG TERM 3968 3032610 - 3032625 + T 90 -10.4 -4.33417 | opp_overlap 3032606 3032596 3032595 3032610, overlap 3032606 TGCCCCAATAACAAA GGAGGC ATTC GCCTCC TTTGTTATGGGTCCG purL 3036661 - 3032663 - | phosphoribosylformylglycinamidine synthase TERM 3969 3033104 - 3033084 - G 75 -6.7 -4.37658 | overlap 3033085 AAGTTGCGCACAAAA CGCGGCCAG TGA CTGGCGCCG GGAATCAGGTTTTTC TERM 3970 3034041 - 3034052 + g 81 -7.2 -4.66833 | TGTGCCAGGATCGAG CCGC CCAG GCGG TTTTTGCCATTGCCC TERM 3971 3034175 - 3034207 + g 82 -11.9 -3.53811 | opp_overlap 3034168 3034175 3034165 3034176 AATAACCAGCGACAA GGGCGCGGTAACGGC CTT GTCGTCACCGCCCTC TTTCCAGGCAGTGCG TERM 3972 3034207 - 3034175 - G 72 -9.7 -3.4071 | opp_overlap 3034175, overlap 3034168 3034165 3034176 AATAACCAGCGACAA GGGCGCGGTAACGGC CTT GTCGTCACCGCCCTC TTTCCAGGCAGTGCG TERM 3973 3036054 - 3036078 + g 72 -8.5 -3.85698 | ACCAGTGCCGCCCGG CCACCGCCGAT AAC ATCCACGGTGG TTTGTGCGGCGGGCG TERM 3974 3036911 - 3036889 - H 76 -5.1 -4.84359 | TGATTTTTATAAAAA TTATAAATA AATCA TATTTATAA ACAAAAATTCCTAGC TERM 3975 3037594 - 3037584 - g 72 -8.2 -3.83998 | TCAGCGCACAGCAAA CGCG TTG CGCG GCTGCAGAAAAAATT lmt23C 3037086 - 3038573 + | lytic murein transglycosylase, putative, lmt23C CJA_2598 3041801 - 3038580 - | ABC-type amino acid transport, signal transduction systems TERM 3976 3039693 - 3039710 + g 73 -4.1 -4.7497 | overlap 3039695 CACCCGCTCACAATG TCCCC CGGTGTAA GGGGA TTTTTCATCAATAGC TERM 3977 3040264 - 3040280 + g 100 -10.9 -4.58685 | GCCTTGCGTGTAGAG TCCATCG TGG CGATGGA TTTTTCCAACAATTT TERM 3978 3042191 - 3042174 - g 77 -11.3 -3.14963 | opp_overlap 3042174, overlap 3042185 GTCACAATCACCCAA CTCAGCC AACA GGCTGAG TTCCATTCCATCGTA TERM 3979 3042174 - 3042191 + G 77 -11.3 -3.19668 | opp_overlap 3042174 3042185 GTCACAATCACCCAA CTCAGCC AACA GGCTGAG TTCCATTCCATCGTA TERM 3980 3042372 - 3042386 + G 80 -5.6 -5.00616 | TTAAATGCCGCTATC CAACCC CAT GGGCTG TTTTTTGCCCCGGAG TERM 3981 3042709 - 3042725 + G 73 -9.4 -3.60098 | ACCTGGCTCATATCC GCGACC ATGAA GGTCGC TTTAACCTCAACAAT TERM 3982 3044354 - 3044316 - g 74 -2.2 -5.06816 | opp_overlap 3044329 3044330 AGTGCCGAAGAAAAA GCCCGTGCCGTTATCCTG GTA CAGGATGCCTTCACCAGC TACTTTGAAACAGCG TERM 3983 3044620 - 3044595 - g 88 -2.4 -5.47159 | opp_overlap 3044597 3044597, overlap 3044596 3044597 GCCGAATACAAAAAA GTCCTGGGCG ACAACG CGCCCAAGGT TTTGTTACTGCAAGA TERM 3984 3044597 - 3044619 + G 81 -7 -4.71426 | gap 1, opp_overlap 3044596 3044595 3044597, overlap 3044597 CGAATACAAAAAAGT CCT-GGGCG ACAACG CGCCCAAGG TTTTGTTACTGCAAG CJA_2599 3041967 - 3045020 + | putative oxidoreductase, FAD-binding TERM 3985 3046371 - 3046353 - g 74 -8.8 -3.93256 | GACAGTTGGAAAGAA GTCAGCCG TGG CGGCCAAC AGCAGGATGATGATC TERM 3986 3047331 - 3047284 - g 80 -12 -3.41726 | gap 1, overlap 3047282 3047324 AATACCTGAACAACA CCAGTCGCTGGC-CAACAGGTAC CCT GCCCCTGTTGCAACAGCGCCTGG CCAAGGCACCAACCC CJA_2600 3045042 - 3047609 + | hypothetical protein TERM 3987 3047653 - 3047637 - f 100 -9.4 -5.69473 | opp_overlap 3047637 CACAGCATAAAAAAA GCGAGC ACAAG GCTCGC TTTTTTTATGGCTGA TERM 3988 3047637 - 3047653 + F 100 -9.4 -5.64274 | opp_overlap 3047637 CACAGCATAAAAAAA GCGAGC ACAAG GCTCGC TTTTTTTATGGCTGA TERM 3989 3047732 - 3047712 - f 100 -14.1 -5.53288 | TTCAACGTAAAAAAA TGGCGGAAT AGA ATTCCGCCA GAAAGGTCAAACACC TERM 3990 3048697 - 3048677 - g 73 -11.9 -2.79452 | opp_overlap 3048675, overlap 3048676 AGCGGCCAATACAAG CGCGTATTG AAT CAACACGCG GCGATTGTAAAAGCC CJA_2601 3048128 - 3048823 + | transcriptional regulator, GntR family TERM 3991 3048865 - 3048849 - f 100 -9.4 -5.1675 | opp_overlap 3048849 CCACCCATTAAAAAA CGCAGC GTAAG GCTGCG TTTTTTATAGCAATA TERM 3992 3048849 - 3048865 + F 100 -9.4 -5.252 | opp_overlap 3048849 CCACCCATTAAAAAA CGCAGC GTAAG GCTGCG TTTTTTATAGCAATA CJA_2602 3049032 - 3049454 + | hypothetical protein TERM 3993 3049625 - 3049598 - g 100 -14.2 -3.60805 | gap 1 ACACGGTACGCCAAA GCCGG-GAGTGGC GTG ACCACTCTCCGGC AAAACCTGCTTGTGC CJA_2603 3049474 - 3049647 + | hypothetical protein fpr 3050431 - 3049655 - | ferredoxin-NADP reductase TERM 3994 3050133 - 3050106 - G 74 -2.7 -4.94262 | gap 1, opp_overlap 3050132, overlap 3050132 GACAGCAAAAACAAA TGCTTGCCCGGC TTGAG GTCGGACAA-CA ACAGGGTACCCGTCG etfA 3051399 - 3050455 - | electron transfer flavoprotein FAD-binding domain CJA_2606 3052145 - 3051396 - | electron transfer flavoprotein beta subunit CJA_2607 3052256 - 3053182 + | transcriptional regulator, LysR family etf-QO 3053151 - 3054878 + | electrotransfer ubiquinone oxidoreductase TERM 3995 3055539 - 3055555 + G 77 -2.9 -5.1523 | ATGTACAGATTTTTC CCGATGA GCA TCAATGG TTTTTCTATTATCAG CJA_2609 3054983 - 3055789 + | hypothetical protein TERM 3996 3055798 - 3055777 - T 79 -10.1 -3.66095 | opp_overlap 3055777 AAATGCCCACCCAAA GCCAGGCCA ATAG TTGCCTGGC TTTTTACACTCAAAC TERM 3997 3055777 - 3055798 + T 93 -10.1 -4.62069 | opp_overlap 3055777 AAATGCCCACCCAAA GCCAGGCCA ATAG TTGCCTGGC TTTTTACACTCAAAC bgl2C 3058695 - 3055837 - | beta-galactosidase, putative, bgl2C TERM 3998 3055928 - 3055979 + g 71 -2.2 -5.0133 | gap 1, opp_overlap 3055921 3055955, overlap 3055929 ACATTCAACTGGCGC AGCCCTTGGCCAGCCGGTAAATT CAAACGC AATTCACCGGC-GGCATAGTGCG TTTTTTGACCCAGTA chi18D 3060623 - 3058857 - | endo-chitinase, putative, chi18D TERM 3999 3061229 - 3061198 - R 76 -5.1 -4.78237 | gap 1, overlap 3061185 CAGGCGACAAGAAAA CGCCCCTG-ATTGC AGCAG GAATTACAGGGGCG AAAAAAGGGGAGAAA CJA_2612 3062076 - 3061279 - | DnaJ-like protein DjlA CJA_2613 3063747 - 3062131 - | hypothetical protein CJA_2614 3064561 - 3065193 + | hypothetical protein TERM 4000 3065307 - 3065324 + F 77 -9.1 -3.90112 | TTGTTGATGATCCAT TGCCGGG CTTG CTCGGCA TTTACTTACGAGGAA cbp2E 3065346 - 3066398 + | carbohydrate binding protein, putative, cbp2E TERM 4001 3068120 - 3068132 + G 78 -9.1 -3.87346 | CCCAGTGATGGTATC CCGGA CAA TCCGG TTTCCTACTTCTCCT cbp2D 3066425 - 3069793 + | carbohydrate binding protein, putative, cbp2D TERM 4002 3069803 - 3069781 - f 80 -12.7 -3.04461 | gap 1, opp_overlap 3069772 3069784 GATTTACCGGCAAGA GTGGGCGCGC TAAT GCGCGCCC-C ATCAAGCTCGCCTTG CJA_2617 3069841 - 3071049 + | hypothetical protein TERM 4003 3071154 - 3071108 - f 100 -18.4 -4.12942 | opp_overlap 3071113 3071151, overlap 3071113 TCAAAGTGTGCAAAA GAAAACGGGTTGTTTATTGTTA TCT TCACAATAAACAACCCGTTTTT CATTTATTGCTCGAT TERM 4004 3071149 - 3071113 - f 100 -18.3 -5.07652 | opp_overlap 3071113, overlap 3071108 GTGTGCAAAAGAAAA CGGGTTGTTTATTGTTA TCT TCACAATAAACAACCCG TTTTTCATTTATTGC TERM 4005 3071113 - 3071149 + F 100 -18.3 -5.09521 | opp_overlap 3071113 3071108 GTGTGCAAAAGAAAA CGGGTTGTTTATTGTTA TCT TCACAATAAACAACCCG TTTTTCATTTATTGC TERM 4006 3072150 - 3072134 - g 70 -6.5 -4.18018 | opp_overlap 3072122 3072135, overlap 3072135 GCGGGCTACGGAAAA GCCTGGT CTG ACCAGGT TGATCCACAAGCGGT TERM 4007 3072135 - 3072149 + G 70 -10 -3.14132 | opp_overlap 3072134 3072135, overlap 3072122 CGGGCTACGGAAAAG CCTGGT CTG ACCAGG TTGATCCACAAGCGG TERM 4008 3072519 - 3072543 + G 70 -3.5 -4.69549 | overlap 3072520 3072524 GCTATTTCAGTAATG GCAGAGGCC TGGACGC GGCCTTTGA TTTTAGTTTTGGATT amy13A 3071501 - 3073375 + | alpha amylase, putative, amy13A wapA 3074053 - 3073448 - | Rhs family protein TERM 4009 3074673 - 3074661 - R 75 -2.7 -5.22794 | ATAATTATCAAAAAA TTACG AAT CATAA TATGGGCCTCTATCA CJA_2620 3075702 - 3074686 - | hypothetical protein TERM 4010 3076103 - 3076121 + G 77 -8.8 -4.09864 | overlap 3076118 ATGTACCGGTATACG TACACCGG CAA CCGGTGGA TTTTCGCAAATCCAT CJA_2621 3076072 - 3076422 + | IS66 family element, Orf2 protein TERM 4011 3077451 - 3077441 - g 95 -6.8 -5.40474 | opp_overlap 3077440 3077441 ACCTTGTGAAAAAAA GGGT ATT ACCC ATTTAGCCTGTTGGG TERM 4012 3077986 - 3077968 - g 72 -10.3 -3.36968 | opp_overlap 3077967 3077968 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_2622 3076455 - 3078023 + | IS66 family element, transposase CJA_2623 3086220 - 3078841 - | Rhs family protein TERM 4013 3082898 - 3082917 + g 70 -6.4 -4.18644 | opp_overlap 3082900 GCCGGTGAACCGATA TACGGCCA ATCC TGGCGGTA TTTGGTTTCTGTGGT TERM 4014 3083795 - 3083807 + g 100 -4.7 -5.60993 | AAGCGGTAATACCAT CTGCC ATT GGCTG TTTTTTTATAGAGAA TERM 4015 3086039 - 3086051 + g 72 -6.3 -4.38712 | AGTTGGCCTGAAGTG TTCAG CTC CTGAA TTTTATAGGGGTACG TERM 4016 3086218 - 3086205 - G 70 -3.9 -4.65512 | AAAACAACGACAAAA GAAAA AATT TTTTC ATAATATTTTCCATA TERM 4017 3086378 - 3086364 - R 72 -5 -4.61231 | TTATATTTTGAAAAA TAAGGA TTG CCCTTA CCTCAGGAATTGGCG gloA 3086830 - 3086447 - | lactoylglutathione lyase CJA_2625 3088647 - 3086950 - | hypothetical protein TERM 4018 3087332 - 3087349 + g 88 -2.6 -5.55664 | opp_overlap 3087333, overlap 3087333 CCCTGGGAATAATTT ACGCTG AAATAC CAGCGA TTTTTTTCATCGTGG TERM 4019 3088167 - 3088156 - G 70 -5.8 -4.18197 | ACGGCTGACGGAAAA CTGG GGTT CCAG CGCCCAGGCATCCTG TERM 4020 3088499 - 3088514 + g 79 -4.6 -5.02074 | GTCTTGATCCGGGTA TCGCCG GCGT CAGCGA TTTTTTCACGCATAC TERM 4021 3088698 - 3088673 - R 72 -8.9 -3.54129 | opp_overlap 3088688 CACACTGGTTGGAAA GAGCCCCACAC AAAG GGGCGAGGCTC TAAATTACCACGACA CJA_2626 3089579 - 3088788 - | TRAP transporter, DctM-like membrane protein ccoS 3089791 - 3089576 - | cytochrome oxidase maturation protein, cbb3-type CJA_2628 3092230 - 3089810 - | cation-transporting P-type ATPase TERM 4022 3089908 - 3089895 - G 72 -5.9 -4.3739 | overlap 3089897 CAGGGCGGTACAAAA CCGGC AGCG GCCAG GGGCAGCGCTAACAG TERM 4023 3090948 - 3090932 - G 86 -3.5 -5.4505 | overlap 3090933 3090934 TCGGGCAATAAAAAA GCGGGCG ATG CGATCGC CAATCAATACCTGCT TERM 4024 3091565 - 3091550 - G 95 -6.8 -5.42259 | overlap 3091555 CCAGGCGGAAAAAAA CACCAC CGGT GTGGCG ACCAGCATGGACAGC TERM 4025 3091674 - 3091662 - G 72 -6.9 -4.15565 | overlap 3091663 TGCATCATGCCAAAA CCGGC AAC GCCGA TACGCATGAGCGAAA CJA_2629 3092749 - 3092231 - | hypothetical protein CJA_2630 3094233 - 3092821 - | iron-sulfur cluster-binding protein TERM 4026 3093463 - 3093475 + g 88 -10.5 -4.07568 | ATCATCGCCCGATTT GCGCG GCC CGCGC TTTTCACCGCGCAAG TERM 4027 3093757 - 3093767 + g 79 -4 -5.055 | overlap 3093749 GGCTTGCTTTGCGCT TTTG CGC CAAA TTTTTTCAAAGTTCC TERM 4028 3094095 - 3094072 - G 77 -3.1 -5.1356 | gap 1, overlap 3094073 GGGCATCAACAAAAA GCCGAGCATC AGGGG GATGC-CGGT GTAACGCCGCAAACG TERM 4029 3094323 - 3094306 - R 100 -12.7 -5.29846 | opp_overlap 3094306 3094322 3094322 AACTCCAAAGAAAAA GGCAGGC CATG GCCTGCC TTCCCTGGAGGGTTT TERM 4030 3094306 - 3094323 + r 80 -12.7 -3.06312 | opp_overlap 3094306, overlap 3094322 3094322 AACTCCAAAGAAAAA GGCAGGC CATG GCCTGCC TTCCCTGGAGGGTTT ccoP 3095273 - 3094365 - | cytochrome c oxidase, cbb3-type, subunit III CJA_2632 3095486 - 3095292 - | cytochrome c oxidase subunit-related protein ccoO 3096097 - 3095486 - | cytochrome c oxidase, cbb3-type, subunit II TERM 4031 3096049 - 3096030 - G 77 -8.6 -4.11751 | ACCAATCCCCCAAAA CTGATGGC AACG ACCATCAG GATCGTCATCAAACC ccoN 3097565 - 3096108 - | cytochrome c oxidase, cbb3-type, subunit I TERM 4032 3097721 - 3097737 + r 95 -10.9 -4.52589 | opp_overlap 3097709 AATCGTGCGGCATTT TGCCTCA AGG TGAGGCA TTTTGTCTCACCCCG argG 3099078 - 3097861 - | argininosuccinate synthase TERM 4033 3099344 - 3099322 - R 91 -8.4 -4.9725 | opp_overlap 3099322, overlap 3099333 AGCCCTATAGAAAAA CAGCCAGG TAATCAG CCCGGCTG TTTCATCACAATATT CJA_2636 3101325 - 3099430 - | methyl-accepting chemotaxis protein TERM 4034 3099927 - 3099955 + g 74 -2.3 -5.07486 | overlap 3099929 3099929 CAATGCCCTGGATAG TCGCCAGGATGCC ACT GATATCCTGGGCA TTTTTATTGAGGCTG TERM 4035 3101140 - 3101117 - G 74 -7.5 -4.07568 | gap 1 GCCGTTGCCGGAAAA GCTTCAAGGG ACTTG CCCTTG-AGC GCGAACCAGTCGGTG sbcB 3103005 - 3101512 - | exodeoxyribonuclease I TERM 4036 3102777 - 3102763 - G 70 -6.4 -4.1552 | GATCGCTGCAATAAA GTCAGC CTC ACTGAC CCCTTTGGCTTCAGC CJA_2638 3103241 - 3103870 + | carbonic anhydrase TERM 4037 3103900 - 3103917 + G 93 -8.4 -5.1523 | opp_overlap 3103900 GATATTGCCCAATAA GGCCAG CCCAGT CTGGCC TTTTTATGTTCTGCC CJA_2639 3103889 - 3106303 + | PAS domain S-box protein CJA_2640 3108058 - 3106313 - | putative response regulator TERM 4038 3106616 - 3106631 + g 72 -4.6 -4.70879 | opp_overlap 3106615 CGTAAAATAATCCAC CACACC GGCA GGCGTG TTTTTGCGGTTTGAA TERM 4039 3106752 - 3106740 - G 76 -9.1 -3.71645 | AAGGGTACACGCAAA CCCTG AAA CAGGG ACATACACAAGGGGG TERM 4040 3107227 - 3107210 - G 83 -12.7 -3.41878 | CTGGTCAATCCACAA GGCGGCA GGGA TGCCGCC ATTCCACACACAGAC TERM 4041 3107467 - 3107454 - G 84 -8.1 -4.66347 | AGTAAAAAATACAAA TCGCC ACGC GGCGA AAAGCGAGCCAATGC CJA_2641 3108360 - 3108082 - | putative SpoIIAA family protein TERM 4042 3108570 - 3108541 - R 100 -22.3 -4.11216 | TTGCCATCCTGAAAA CTGGATCGGCAGC CGAA GCTGCCGATCCAG GGAGAGGCCAACAGA CJA_2642 3110112 - 3108592 - | fumarate hydratase, class I TERM 4043 3110242 - 3110223 - RH 100 -10.8 -5.44119 | opp_overlap 3110223 GCGAGGCGAAAAAAA GGCGATTT CTGC AAATCGCC TTTTGGAACACTGGC TERM 4044 3110223 - 3110242 + rH 87 -10.8 -4.08767 | opp_overlap 3110223 GCGAGGCGAAAAAAA GGCGATTT CTGC AAATCGCC TTTTGGAACACTGGC CJA_2643 3111051 - 3110275 - | hypothetical protein TERM 4045 3110597 - 3110618 + Gg 79 -2.1 -5.26875 | overlap 3110601 TTTTTCGCTACTGCG GTATCGCGG CCAA CCGCGTTGA TTTTTTCATTGGCCA TERM 4046 3110601 - 3110614 + Gg 78 -9.5 -3.98857 | overlap 3110597 TCGCTACTGCGGTAT CGCGG CCAA CCGCG TTGATTTTTTCATTG CJA_2644 3110245 - 3111027 + | hypothetical protein TERM 4047 3111178 - 3111192 + Tr 100 -8.5 -5.93809 | opp_overlap 3111178 CAAGCATAAAAAAAA CGGGC GCACG GCCCG TTTTTTTTATGGCGC TERM 4048 3111192 - 3111178 - TR 100 -8.5 -6.02345 | opp_overlap 3111178 CAAGCATAAAAAAAA CGGGC GCACG GCCCG TTTTTTTTATGGCGC CJA_2645 3111807 - 3111223 - | superoxide dismutase TERM 4049 3111937 - 3111909 - R 100 -19 -4.15833 | ATTATCAGCCGAAAA TAGTGACGGCCC ACCAG GGGCCGTCACTA TAGCGCAAAATCACT TERM 4050 3111951 - 3111996 + r 83 -9.2 -4.26003 | gap 1, opp_overlap 3111951 TATAGCGCAAAATCA CTGGATGAGGCGCAGACTG GCCCAAAAG TAGTCTGCGTCT-ATCCGG TTTCTTGCCTGTTGT groL 3113683 - 3112046 - | chaperonin GroEL TERM 4051 3112675 - 3112697 + g 74 -8.4 -3.98448 | overlap 3112678 TTTCTTCTGCTTTAC CAGCACCGTC AAC GATGGTGGTG TTGTCTTTGTTCATG groES 3114273 - 3113746 - | GroES protein TERM 4052 3114312 - 3114265 - G 77 -11.4 -3.14132 | TGGGGCTGGGATTAA GGATTTCAACAGGCATCGTAAA AAAA TCTGCGATTCCTGCTGAAAACC TAAGGCTTGGGAGGT fsxA 3114809 - 3114312 - | fxsA protein CJA_2649 3115859 - 3114843 - | hypothetical protein TERM 4053 3115183 - 3115171 - G 73 -9.1 -3.65425 | TCGATATAGGCCAAA CCCAG CTG CTGGG ATAAGGCGGTCTTGC CJA_2651 3116051 - 3116380 + | MGMT family protein CJA_2650 3117773 - 3116337 - | AmpG protein TERM 4054 3116931 - 3116913 - G 79 -4.4 -4.96427 | GAATAAGAAAACAAA GGCGAGGA TCA TCAGCGCC AATTGCAAGCCGTTG TERM 4055 3117789 - 3117758 - G 100 -13.8 -5.02074 | gap 1, overlap 3117761 3117763 GTAGTGGGGAAAAAA CAACA-CGGGGTGGC ATT GCCACCCCGCTGTCA GGATCAATCGCGGAA TERM 4056 3117786 - 3117761 - G 100 -15.5 -4.61482 | gap 1, overlap 3117758 3117763 GTGGGGAAAAAACAA CA-CGGGGTGGC ATT GCCACCCCGCTG TCAGGATCAATCGCG TERM 4057 3117783 - 3117763 - G 100 -18.3 -3.91465 | overlap 3117761 3117758 GGGGAAAAAACAACA CGGGGTGGC ATT GCCACCCCG CTGTCAGGATCAATC CJA_2652 3118275 - 3117793 - | hypothetical protein CJA_2653 3119304 - 3118315 - | putative AmpE ampD 3119863 - 3119315 - | N-acetyl-anhydromuramyl-L-alanine amidase AmpD TERM 4058 3119426 - 3119452 + g 77 -5.8 -4.60924 | AGGCGTAAGTTTAGG GTAAGTTGCCAG CAA CTGGCGAGTGAC TTTTTCCAGGCTTTG CJA_2655 3121392 - 3119869 - | probable ATPase CJA_2656 3121547 - 3122194 + | hypothetical protein TERM 4059 3123518 - 3123571 + G 77 -12.2 -2.7682 | overlap 3123517 3123517 GTGCTACCCAGTTGC CGCCGTCCAAGCCGGCGCTGTGGA CCATCC TCCACCGCGCCATCATGGCCGGCC CTGTTTATCGTTACG TERM 4060 3127226 - 3127169 - g 88 -10.5 -4.07568 | gap 1, opp_overlap 3127220, overlap 3127223 TGGTCTTCTCCAAAA CCTCCGGCTTCCGCCACGGTTCTATCCC GGC GGG-TATCGCCATGGTGGAAGCCATAGG CGCGGCCCACGGTTA TERM 4061 3127327 - 3127304 - g 76 -12.6 -2.66316 | opp_overlap 3127301 3127300, overlap 3127301 TGGCGCAGTACACCA CCGTAGTATT TATG AATACTACGG GCGATATTTTTACCC TERM 4062 3127453 - 3127467 + G 78 -9.2 -3.91897 | TATATAAACACGCTG CTGGGC GGT GCCCGG TTTATCCATCACGGC cbp32B 3122536 - 3127809 + | carbohydrate binding protein, putative, cbp32B TERM 4063 3127846 - 3127870 + T 91 -11.4 -4.29106 | overlap 3127847 CCACAGGGGCTCTTT ACCCCCATCC CAAAA GGATGGGGGC TTTATTAGTCTGCGG TERM 4064 3127847 - 3127869 + T 90 -14.9 -3.16982 | overlap 3127846 CACAGGGGCTCTTTA CCCCCATCC CAAAA GGATGGGGG CTTTATTAGTCTGCG CJA_2658 3128297 - 3127875 - | OsmC/Ohr family protein CJA_2659 3128597 - 3129196 + | cyclic AMP receptor-like protein TERM 4065 3129231 - 3129247 + T 100 -13.7 -5.03314 | opp_overlap 3129231 TCCATAATCAAAAAA GCCCGCA TAT TGCGGGC TTTTTTACAGATAAA TERM 4066 3129247 - 3129231 - T 100 -13.7 -5.32944 | opp_overlap 3129231 TCCATAATCAAAAAA GCCCGCA TAT TGCGGGC TTTTTTACAGATAAA trpC 3130166 - 3129270 - | indole-3-glycerol phosphate synthase TERM 4067 3129847 - 3129873 + gT 90 -8 -4.98531 | overlap 3129848 GGAACAAAATGCGCG CGCATCACCC CCTTGCT GGGTGATGCC TTTTTAATTTCCGCA TERM 4068 3129848 - 3129872 + gT 85 -11.5 -3.58396 | overlap 3129847 GAACAAAATGCGCGC GCATCACCC CCTTGCT GGGTGATGC CTTTTTAATTTCCGC trpD 3131151 - 3130120 - | anthranilate phosphoribosyltransferase TERM 4069 3131270 - 3131244 - R 93 -15.2 -3.07962 | opp_overlap 3131233 GGTTAGACGCGAATA CCCTGGAGGCCT AGT AGGCCTCCAGAA AATTGCGCAACATAT trpG 3131835 - 3131254 - | anthranilate synthase component II trpE 3133346 - 3131832 - | anthranilate synthase component I CJA_2664 3134368 - 3133646 - | rRNA methylase CJA_2665 3136001 - 3134382 - | uncharacterized FAD-dependent dehydrogenase TERM 4070 3134592 - 3134611 + g 72 -7.8 -3.90112 | opp_overlap 3134587, overlap 3134593 GGTAAGCACAGCATC CTCGCGGT CAAA ACCGCGAA TTTGCTTACCAAAGG TERM 4071 3134593 - 3134610 + g 75 -11.3 -2.93853 | opp_overlap 3134587, overlap 3134592 GTAAGCACAGCATCC TCGCGGT CAAA ACCGCGA ATTTGCTTACCAAAG TERM 4072 3135179 - 3135167 - G 81 -4.7 -5.06414 | overlap 3135147 3135140 TTGCCTCAACAAAAA CCCCG CGC CGGTG CAATGTGCGAAACGT rpe 3136759 - 3136058 - | ribulose-phosphate 3-epimerase TERM 4073 3137434 - 3137422 - g 78 -7.7 -4.31164 | CCGACAGAAGACAAA CCACA CAC TGTGG CACGCGAGCAATTGA TERM 4074 3137665 - 3137675 + G 70 -6.8 -4.09685 | CTGACTACTGCCGAA CTGG AAG CCAG TTTTAGCCAATCACA CJA_2667 3136825 - 3137934 + | hypothetical protein TERM 4075 3137983 - 3137952 - T 100 -13.9 -4.21275 | opp_overlap 3137959, overlap 3137955 3137959 GCAATCCACTGAAAA CAAGAAAGGCGCT GTTATA AGCGCCTTTCTTA CCCTGTCACGAATCA TERM 4076 3137980 - 3137955 - T 95 -13.4 -4.22214 | opp_overlap 3137959, overlap 3137952 3137959 ATCCACTGAAAACAA GAAAGGCGCT GTTATA AGCGCCTTTC TTACCCTGTCACGAA TERM 4077 3137976 - 3137959 - T 84 -8.4 -4.68601 | opp_overlap 3137959, overlap 3137955 3137952 ACTGAAAACAAGAAA GGCGCT GTTATA AGCGCC TTTCTTACCCTGTCA TERM 4078 3137959 - 3137976 + T 79 -8.4 -4.19678 | opp_overlap 3137959 3137955 3137952 ACTGAAAACAAGAAA GGCGCT GTTATA AGCGCC TTTCTTACCCTGTCA CJA_2668 3139073 - 3138237 - | DTW domain protein TERM 4079 3138653 - 3138632 - G 100 -10.1 -4.8048 | TTTCGACAGGAAAAA CCAGCAGGC ACAA GCGTGCTGG ATCTGCCAATAGATT TERM 4080 3139018 - 3138990 - G 100 -11.2 -4.89393 | gap 1, opp_overlap 3138997, overlap 3138997 GAAATCGTACAAAAA CAAAAAACCCGCA ATAT TGCGGG-TTTTTG CACCTAAGTCATCTA TERM 4081 3139012 - 3138997 - G 100 -10.4 -5.98675 | opp_overlap 3138997, overlap 3138990 TACAAAAACAAAAAA CCCGCA ATAT TGCGGG TTTTTGCACCTAAGT TERM 4082 3138997 - 3139012 + g 95 -10.4 -4.60041 | opp_overlap 3138997 3138990 TACAAAAACAAAAAA CCCGCA ATAT TGCGGG TTTTTGCACCTAAGT CJA_2670 3139547 - 3139140 - | putative preprotein translocase SecG subunit CJA_2671 3140369 - 3139608 - | triosephosphate isomerase TERM 4083 3140513 - 3140478 - R 73 -10.6 -3.05844 | gap 1, opp_overlap 3140484, overlap 3140481 TTGGCTAGGGCAACA GC-AGCACCGACCAA GGCTGGG TTGGTCGGTGCTTAC AAAGTCTGCGCTTTG TERM 4084 3140509 - 3140481 - R 86 -14.7 -2.75074 | opp_overlap 3140484, overlap 3140478 GCTAGGGCAACAGCA GCACCGACCAA GGCTGGG TTGGTCGGTGC TTACAAAGTCTGCGC TERM 4085 3140557 - 3140580 + r 82 -5.9 -5.24129 | overlap 3140559 CGCCAAATTGCCGAT TTGCCTGGC TGCAGC GCCAGGCTG TTTTTTATAAAAGAG TERM 4086 3140559 - 3140578 + r 90 -10.7 -4.25873 | overlap 3140557 CCAAATTGCCGATTT GCCTGGC TGCAGC GCCAGGC TGTTTTTTATAAAAG glmM 3141933 - 3140596 - | phosphoglucosamine mutase folP 3142845 - 3141985 - | dihydropteroate synthase TERM 4087 3142890 - 3142867 - R 100 -11 -5.49729 | overlap 3142870 AACTACCGAAAAAAA TAACCCCGAG CAAA CTCGGGGTTG GGATTACGCGTAAAC TERM 4088 3142887 - 3142870 - R 100 -12.7 -4.8236 | overlap 3142867 TACCGAAAAAAATAA CCCCGAG CAAA CTCGGGG TTGGGATTACGCGTA TERM 4089 3142927 - 3142955 + r 76 -11.7 -2.58579 | opp_overlap 3142921, overlap 3142926 AGACATCAATGAGTG TTTGCCGGGCC ACCAATA GGCCCGGCAGG ATTCTCACCGGTTGA ftsH 3144830 - 3142917 - | cell division protein FtsH TERM 4090 3143489 - 3143475 - G 70 -10 -3.18264 | overlap 3143485 GCCTTCAGGCAGGAA CTGGGT AAC ACCCAG GGCGCGACCGCGGGG TERM 4091 3144079 - 3144089 + g 77 -3.2 -5.06451 | TCGATAAATACAATA CAGG GGG CTTG TTTTTTAGCCTGCTC rrmJ 3145513 - 3144878 - | ribosomal RNA large subunit J TERM 4092 3145185 - 3145171 - G 71 -9.2 -3.43604 | overlap 3145165 3145172 AGATTACAAGATCAA CCGGCG TAT CGCCGA TAGCCAGAAGGATTT TERM 4093 3145351 - 3145335 - G 73 -11.5 -2.78018 | overlap 3145332 ACTTGCGACCAACCA CCCGGCG CAG CGCCGAG ATCGACCACCAACAT TERM 4094 3145426 - 3145447 + g 74 -2.3 -5.06451 | gap 1, overlap 3145428 TATAACTGGCCCGGG TTCTATAGCC GTC GGC-ATGGGA TTTTTTGACATACTG TERM 4095 3145568 - 3145586 + H 72 -6 -4.48987 | opp_overlap 3145567 3145568, overlap 3145569 GCCGTAACCCATAAC TTCAGGTA CAA TACCTGAC TTTTCGTTATCACAC TERM 4096 3145569 - 3145585 + H 71 -9.5 -3.2891 | opp_overlap 3145568 3145567, overlap 3145568 CCGTAACCCATAACT TCAGGTA CAA TACCTGA CTTTTCGTTATCACA CJA_2676 3145644 - 3145949 + | hypothetical protein CJA_2677 3146759 - 3146073 - | kinesin light chain-like protein TERM 4097 3146660 - 3146645 - G 100 -5.4 -5.95539 | overlap 3146657 TTGTAAACAAAAAAA CCAGTA GTAA CACTGG CATACGCAAGGAAAG TERM 4098 3146711 - 3146727 + g 84 -10.8 -3.83998 | opp_overlap 3146711 TCACCAATGACAAAA CGGCGC ACAAG GCGCCG TTTCCTATAGGGTAA TERM 4099 3146727 - 3146711 - G 95 -10.8 -4.56607 | opp_overlap 3146711 TCACCAATGACAAAA CGGCGC ACAAG GCGCCG TTTCCTATAGGGTAA CJA_2678 3149157 - 3146743 - | putative lipoprotein TERM 4100 3148651 - 3148641 - G 90 -6.8 -5.03314 | CCGATGTGGAAAAAA CAGC CCG GCTG GTGGAGGGTTTTTCC TERM 4101 3149162 - 3149176 + r 70 -2.1 -5.00616 | AACGATTTCATTAAC CATCT CCGGT AGGTG TTTTTTGAAAACAGA hasR 3151975 - 3149195 - | HasR TERM 4102 3150150 - 3150166 + g 72 -7.9 -3.99592 | overlap 3150152 AGGTTTTCGTTGCGC CCGGTGG GAA CCACCTG TTTGTGATCGTCAGT TERM 4103 3150152 - 3150164 + g 73 -9.1 -3.58864 | overlap 3150150 GTTTTCGTTGCGCCC GGTGG GAA CCACC TGTTTGTGATCGTCA TERM 4104 3152105 - 3152133 + r 90 -13.2 -3.53012 | gap 1, opp_overlap 3152105 GTGAGGGAAAAAAAA TGCAGCCACCGCG TTGG TGCGG-GGCTGCA TTTGAGGAAAGCGCC TERM 4105 3152133 - 3152105 - R 100 -12.5 -5.81412 | gap 1, opp_overlap 3152105 GTGAGGGAAAAAAAA TGCAGCCACCGC GTTGGT GCGG-GGCTGCA TTTGAGGAAAGCGCC CJA_2680 3153132 - 3152164 - | sigma factor regulatory protein, FecR/PupR family CJA_2681 3153849 - 3153331 - | RNA polymerase sigma factor, sigma-70 family TERM 4106 3153942 - 3153928 - H 74 -11.4 -2.93207 | opp_overlap 3153937 AATACTATTGATATA GGGCAG TCA CTGCCC CAATAAAAGCCGGGC CJA_2682 3154085 - 3154702 + | Heme oxygenase CJA_2683 3154702 - 3155082 + | hypothetical protein CJA_2684 3155079 - 3155885 + | possible energy transducer TonB, C-terminal region TERM 4107 3155905 - 3155934 + T 100 -18 -5.06414 | opp_overlap 3155905 TCAAGCTATAAAAAA GCCGCGGTTAAC ACCCTG GTTAACCGCGGC TTTTTATTCCGCCCG TERM 4108 3155934 - 3155905 - T 100 -18 -5.31456 | opp_overlap 3155905 TCAAGCTATAAAAAA GCCGCGGTTAAC ACCCTG GTTAACCGCGGC TTTTTATTCCGCCCG greA 3156454 - 3155975 - | transcription elongation factor TERM 4109 3156402 - 3156429 + g 78 -10.7 -3.51597 | gap 1, opp_overlap 3156406, overlap 3156406 TTCAGATCCTCTAAT TCA-AGGCGCAG TTTTT CTGCGCCTGTGA TTGTCATTGGAAATT TERM 4110 3156424 - 3156406 - G 77 -11.7 -3.17392 | opp_overlap 3156402 3156406 GATCCTCTAATTCAA GGCGCAG TTTTT CTGCGCC TGTGATTGTCATTGG TERM 4111 3156406 - 3156424 + g 75 -11.7 -2.9953 | opp_overlap 3156406, overlap 3156402 GATCCTCTAATTCAA GGCGCAG TTTTT CTGCGCC TGTGATTGTCATTGG carB 3159688 - 3156470 - | carbamoyl-phosphate synthase, large subunit carA 3160902 - 3159700 - | carbamoyl-phosphate synthase, small subunit TERM 4112 3159770 - 3159748 - G 73 -9 -3.6279 | opp_overlap 3159768, overlap 3159749 AAAGTGGTCGAACAA CGGCGCCGCA TCA TGCGGGCCCG GGCTGGCTTCGGGGT TERM 4113 3161097 - 3161128 + r 86 -8.8 -4.37544 | opp_overlap 3161099, overlap 3161099 CGTTTGGTTGTAAAA AAGCGAGATGAAAA CCAA TTCTCATCTCGCTC TTTATGTTCTTGTGC TERM 4114 3161099 - 3161126 + r 86 -11.4 -3.77671 | opp_overlap 3161099, overlap 3161097 TTTGGTTGTAAAAAA GCGAGATGAAAA CCAA TTCTCATCTCGC TCTTTATGTTCTTGT TERM 4115 3161126 - 3161099 - R 100 -13.6 -5.00616 | opp_overlap 3161097 3161099 TTTGGTTGTAAAAAA GCGAGATGAAAA CCAA TTCTCATCTCGC TCTTTATGTTCTTGT dapB 3162256 - 3161429 - | dihydrodipicolinate reductase TERM 4116 3161930 - 3161954 + g 79 -10 -3.78934 | opp_overlap 3161931 3161951, overlap 3161931 TTCTGCGACACTAAA ACCGGTTGTG CCAAT CACAACCGGC TTGTTATGCGCCGCG TERM 4117 3161953 - 3161931 - G 100 -13.5 -4.34402 | opp_overlap 3161931 3161930, overlap 3161951 TCTGCGACACTAAAA CCGGTTGTG CCAAT CACAACCGG CTTGTTATGCGCCGC TERM 4118 3161931 - 3161953 + g 82 -13.5 -2.87146 | opp_overlap 3161931 3161951, overlap 3161930 TCTGCGACACTAAAA CCGGTTGTG CCAAT CACAACCGG CTTGTTATGCGCCGC ribA 3162866 - 3162249 - | GTP cyclohydrolase II CJA_2690 3163539 - 3162907 - | putative conserved hypothetical protein TIGR02281 CJA_2691 3164074 - 3163589 - | Phosphatidylglycerophosphatase A thiL 3165057 - 3164077 - | thiamine-monophosphate kinase nusB 3165590 - 3165084 - | transcription antitermination factor NusB TERM 4119 3165633 - 3165608 - R 100 -13.3 -4.40561 | overlap 3165605 3165609 GGGCCTGAAAAAGAA CCGGCGATGAG GAGG CTCATCGCCGC GGGTTACCAACATCA TERM 4120 3165632 - 3165609 - R 100 -16.8 -3.23855 | overlap 3165608 3165605 GGCCTGAAAAAGAAC CGGCGATGAG GAGG CTCATCGCCG CGGGTTACCAACATC ribH 3166178 - 3165684 - | 6,7-dimethyl-8-ribityllumazine synthase TERM 4121 3165898 - 3165884 - G 75 -11.4 -2.90583 | overlap 3165883 CAACATAATCGAAAT GCGGTG TGC CACCGC GAATTACCGCCCCCA TERM 4122 3165923 - 3165949 + g 74 -3 -5.02074 | overlap 3165925 CCCCCAGGGCAATAA TTGCATCGAA TTCTTTT TTCGCTGCGA TTTTTTGCGCCGTCA TERM 4123 3165990 - 3165978 - G 76 -9.1 -3.85165 | CAGCGGAAACTCAAA CGCAC CCG GTGCG TAATAAATCGTAATG ribB/A 3167316 - 3166198 - | bifunctional protein 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II ribE 3168012 - 3167353 - | riboflavin synthase, alpha subunit CJA_2697 3168566 - 3168021 - | RDD family domain protein ribD 3169802 - 3168651 - | riboflavin biosynthesis protein RibD CJA_2699 3170303 - 3169806 - | conserved hypothetical protein TIGR00244 TERM 4124 3170217 - 3170195 - G 70 -9.8 -3.15544 | CGCGACGGCGACGAA CCTGGTCGCC TTC AGCCACCAGG CGGGAGTCAATGACT CJA_2700 3171196 - 3170351 - | putative amino acid ABC transporter, periplasmic amino acid-binding portion TERM 4125 3170609 - 3170577 - G 83 -6.2 -4.96848 | gap 1, opp_overlap 3170594, overlap 3170578 3170579 TCTGCCAGATAAAAA TCCCCGCGGCGCTGC ATCA GCATCGCCA-GGGCA CTGCTGTGATTGGGA CJA_2701 3171984 - 3171196 - | GGDEF domain protein TERM 4126 3171996 - 3171964 - G 95 -12 -4.36914 | opp_overlap 3171965 3171968, overlap 3171966 CCGCCCCCCATAAAA CAGAGCCCCCTGAT CTGGC ATCAGGGGGCTCAT TACATACAAGTTATA TERM 4127 3171965 - 3171995 + g 95 -15.5 -3.0701 | opp_overlap 3171964 3171966, overlap 3171968 CGCCCCCCATAAAAC AGAGCCCCCTGAT CTGGC ATCAGGGGGCTCA TTACATACAAGTTAT TERM 4128 3171994 - 3171966 - G 100 -19 -3.79419 | opp_overlap 3171965 3171968, overlap 3171964 GCCCCCCATAAAACA GAGCCCCCTGAT CTGGC ATCAGGGGGCTC ATTACATACAAGTTA TERM 4129 3171968 - 3171992 + g 95 -15.8 -2.75183 | opp_overlap 3171966 3171964, overlap 3171965 CCCCCATAAAACAGA GCCCCCTGAT CTGGC ATCAGGGGGC TCATTACATACAAGT CJA_2702 3172744 - 3172037 - | hypothetical protein TERM 4130 3172101 - 3172115 + g 71 -2.8 -4.82901 | opp_overlap 3172101 CCCGGTTGGGATAAC TCCG CACCGGC CGGA TTTTTATAGACCCAA TERM 4131 3172951 - 3172981 + r 79 -9.9 -3.76125 | opp_overlap 3172958, overlap 3172958 TAAAAATAGGGGCAA TAAAAAAGCAGCC ATAAA GACTGCTTTTTTA TTTGCGTTCCGATAA TERM 4132 3172958 - 3172974 + r 88 -3.6 -5.67283 | opp_overlap 3172958, overlap 3172951 AGGGGCAATAAAAAA GCAGCC ATAAA GACTGC TTTTTTATTTGCGTT TERM 4133 3172974 - 3172958 - R 88 -5.8 -5.45652 | opp_overlap 3172958 3172951 AGGGGCAATAAAAAA GCAGCC ATAAA GACTGC TTTTTTATTTGCGTT glyA 3174268 - 3173003 - | serine hydroxymethyltransferase TERM 4134 3173130 - 3173113 - G 72 -8.5 -3.71687 | opp_overlap 3173113 CGAAAATATCGCAAA TCCAGTT AGTT AACTGGA TACATTCCGCCTCTT TERM 4135 3173824 - 3173814 - G 72 -8.2 -3.80858 | opp_overlap 3173822 TCATAATCCACCAAA CCGG TTT CCGG GTTCAGGCCGTACTG CJA_2704 3174467 - 3174315 - | hypothetical protein TERM 4136 3174448 - 3174415 - G 86 -6.7 -4.96848 | CGGCTCATACAAAAA GCCCCTTTTGGCA CCTCCAAT TGCCAAATGGCGC GCAACACAAAATTAC TERM 4137 3174486 - 3174475 - H 86 -3 -5.64274 | TTACCCATAAAAAAA TATC CATA GATA AATACTTTTTGTTGA CJA_2705 3174749 - 3175288 + | hypothetical protein TERM 4138 3175315 - 3175331 + T 100 -12.3 -5.47218 | opp_overlap 3175315 TGATCAATAAAAAAA TCCCCAC CAT GTGGGGA TTTTTTTAGGTCAGC TERM 4139 3175331 - 3175315 - T 100 -12.3 -5.84381 | opp_overlap 3175315 TGATCAATAAAAAAA TCCCCAC CAT GTGGGGA TTTTTTTAGGTCAGC xyl31A 3178325 - 3175359 - | alpha-xylosidase, putative, xyl31A TERM 4140 3177220 - 3177230 + g 70 -5.4 -4.40003 | CCATCAGGCTTCCAA CTCA CCT TGAG TTTATGTTTATCGCC TERM 4141 3177407 - 3177423 + g 78 -5.2 -4.82901 | TCGAACCTTCCAATT CAATAC GCAAG GTATTG TTTTTGTAGGCACCC bgl35A 3180093 - 3178366 - | beta-galactosidase, putative, bgl35A CJA_2708 3180130 - 3180237 + | hypothetical protein TERM 4142 3180277 - 3180243 - T 100 -12.3 -5.47399 | opp_overlap 3180247, overlap 3180220 3180247 TCAATTGTAAAAAAA TAAACCTGTGCCTGA ATAAA TCAGACACAGGTTTC TACTGTACGCTTATT TERM 4143 3180273 - 3180247 - T 100 -13.1 -5.20328 | opp_overlap 3180247, overlap 3180220 3180243 TTGTAAAAAAATAAA CCTGTGCCTGA ATAAA TCAGACACAGG TTTCTACTGTACGCT TERM 4144 3180247 - 3180273 + T 89 -10.9 -4.01888 | opp_overlap 3180220 3180243 3180247 TTGTAAAAAAATAAA CCTGTGCCTGA ATAAA TCAGACACAGG TTTCTACTGTACGCT CJA_2709 3183192 - 3180292 - | TonB-dependent receptor afc95A 3185628 - 3183280 - | alpha-L-fucosidase, putative, afc95A TERM 4145 3183356 - 3183375 + g 72 -5.6 -4.58663 | TGCCGACAGCGAACC GGCCTGGT TTTC GCCAGCCC TTTTTGCGCAATCCT TERM 4146 3185446 - 3185468 + g 84 -4.1 -5.29385 | gap 2, opp_overlap 3185446, overlap 3185446 GTAACCACGCACAGA CCC-G-GGGCC ACC GGTCCACAGGG TTTTTTCGTTGAATT CJA_2711 3185748 - 3185891 + | hypothetical protein CJA_2712 3185989 - 3185897 - | hypothetical protein CJA_2713 3187522 - 3186035 - | tryptophan halogenase CJA_2714 3187708 - 3188679 + | hypothetical protein TERM 4147 3189073 - 3189093 + G 75 -5.3 -4.7254 | opp_overlap 3189073 CGTTTTGCCATGGAA GCGCTTAGC CGC GCCAATCGC TTTTTGCTGACACCT CJA_2715 3188746 - 3189852 + | putative outer membrane phospholipase A precursor CJA_2716 3190292 - 3189930 - | hypothetical protein CJA_2717 3192741 - 3190294 - | hypothetical protein TERM 4148 3190471 - 3190492 + g 79 -2.3 -5.18726 | gap 1, overlap 3190472 3190473 GCGCCCCTGTTGATC CA-CCAGCAT ATA ATGCTGGGTC TTTTTGTTGTACCAG TERM 4149 3190472 - 3190490 + g 76 -7.4 -4.22377 | overlap 3190471 3190473 CGCCCCTGTTGATCC ACCAGCAT ATA ATGCTGGG TCTTTTTGTTGTACC TERM 4150 3190473 - 3190489 + g 72 -10.9 -3.12342 | overlap 3190472 3190471 GCCCCTGTTGATCCA CCAGCAT ATA ATGCTGG GTCTTTTTGTTGTAC TERM 4151 3192433 - 3192453 + g 74 -8.3 -3.9461 | opp_overlap 3192434, overlap 3192434 AAACTTCACATAACC ATTTGCCAG GTG CTGGCAAAA TTCTTGTTCCGCCGC TERM 4152 3192434 - 3192452 + g 75 -11.8 -2.96444 | opp_overlap 3192434, overlap 3192433 AACTTCACATAACCA TTTGCCAG GTG CTGGCAAA ATTCTTGTTCCGCCG TERM 4153 3192452 - 3192434 - G 75 -11.8 -2.89565 | opp_overlap 3192434 3192433 AACTTCACATAACCA TTTGCCAG GTG CTGGCAAA ATTCTTGTTCCGCCG TERM 4154 3194145 - 3194134 - g 70 -5.8 -4.16921 | CAACAACCGCCAAAA CAGC TATG GCTG TCGCCTCCGGTACCG CJA_2718 3193371 - 3194429 + | ABC transporter, periplasmic substrate-binding protein TERM 4155 3195283 - 3195294 + G 70 -5.8 -4.19704 | overlap 3195262 3195290 GCTGTTGGCCAAGCT CAGC CAGC GCTG TTTTCCCTGGCATTA CJA_2719 3194507 - 3195325 + | ABC transporter, permease protein TERM 4156 3195862 - 3195836 - g 72 -8.6 -3.72576 | opp_overlap 3195838 TCGGGTGGTATGAAA CAGCGCCTGGCC ATT GCCCAAGCCCTG ATTCGCCAGCCGCGC CJA_2720 3195398 - 3196171 + | ABC transporter, ATP-binding protein TERM 4157 3196493 - 3196468 - g 71 -9 -3.5627 | gap 1, overlap 3196456 AGACCATTCTGCAAA CGGTGCCG-GC AACTG GCACGACACCG TGTGCGGCACCAGCA CJA_2721 3196202 - 3196939 + | hypothetical protein TERM 4158 3197086 - 3197103 + G 70 -6.9 -4.13767 | opp_overlap 3197085 3197088, overlap 3197071 GACCTCGAAGGCAAC CAGGCCG CCGA CGTCCTG TTTTACAATGCCAAA CJA_2722 3196957 - 3197598 + | hypothetical protein TERM 4159 3197632 - 3197647 + F 72 -9 -3.50853 | opp_overlap 3197629 3197627 CCAGTTAAAACACCT CAGTGG ACGA CCACTG TTGTACTTCACCCAC TERM 4160 3197920 - 3197882 - g 81 -4.5 -5.03314 | gap 1, overlap 3197883 3197903 TGGATCGGCAAAAAA TTATCGCCATTGC-CCGG CAAA CCGGTGCACAGGCAATAC ACCCCGGATACGGTT TERM 4161 3198179 - 3198158 - g 83 -10.1 -4.11216 | opp_overlap 3198172, overlap 3198159 3198161 CGGTGATGCTCAAAA GTACCGCCG GCGG CGGCGGTAT CGGCATGCAGCTGTG TERM 4162 3198178 - 3198159 - g 87 -13.6 -3.06515 | opp_overlap 3198172, overlap 3198158 3198161 GGTGATGCTCAAAAG TACCGCCG GCGG CGGCGGTA TCGGCATGCAGCTGT TERM 4163 3198176 - 3198161 - g 75 -11.8 -3.09004 | opp_overlap 3198172, overlap 3198159 3198158 TGATGCTCAAAAGTA CCGCCG GCGG CGGCGG TATCGGCATGCAGCT TERM 4164 3199612 - 3199634 + G 85 -3.2 -5.40072 | overlap 3199614 GAACTACGGGTTATC TACGGCCCCC ATG GTGCGCCGGA TTTTTTTACCGACCG CJA_2723 3197686 - 3201303 + | urea amidolyase homolog TERM 4165 3201337 - 3201321 - T 100 -11.5 -5.31855 | CATTAATAACAAAAA CCCGGCC TAA AGCCGGG TTAAGATTCCTGGGA CJA_2724 3203835 - 3201370 - | hypothetical protein TERM 4166 3202326 - 3202347 + g 72 -5.7 -4.55798 | overlap 3202327 TAAGTTCGGCATCCA CCTGGGCGC GGGC GCGCTCGGA TTTTGCTTTGCCATC TERM 4167 3203461 - 3203478 + g 79 -4.9 -4.89233 | GGACAACTCATCCAG GGAGAAA GGCT TTTCTTC TTTTTGCTGTTCATC TERM 4168 3204184 - 3204168 - g 70 -5.1 -4.37658 | AATCCCCGCACAAAA CACGG CAAGTGC CCGTG TCATCACGCGTGAAG TERM 4169 3204808 - 3204788 - g 87 -14.1 -3.02043 | AAGCCTCCGGTAATA TCACCAGTG AAA CACTGGTGA CCATCGCGGAAACGG nadC 3204037 - 3204921 + | nicotinate-nucleotide pyrophosphorylase CJA_2726 3207981 - 3204955 - | spermine/spermidine synthase family protein tfpZ 3208826 - 3208083 - | type IV pilin accessory protein pilA 3209337 - 3208852 - | Fimbrial protein precursor (Pilin) TERM 4170 3209123 - 3209151 + g 78 -5.2 -4.85782 | overlap 3209127 CCATCAATTCCCGTC CCCATGTCCGCA TAGTC TGCGGGCATACG TTTATTTTTGGCAGA TERM 4171 3209424 - 3209407 - R 100 -11.3 -6.06723 | opp_overlap 3209407 TTTTGGAAAAAAAAA GCCCTGT AAAA ACAGGGC TTTTCACATTAGCTT TERM 4172 3209407 - 3209424 + r 91 -11.3 -4.20354 | opp_overlap 3209407 TTTTGGAAAAAAAAA GCCCTGT AAAA ACAGGGC TTTTCACATTAGCTT CJA_2729 3209943 - 3209443 - | pilin TERM 4173 3210110 - 3210095 - H 80 -6.2 -4.79373 | CAATACAACACAAAA CCTTAT GAAA ATAAGG GTAACACATGCCGTT pilB 3210370 - 3212091 + | PilB protein TERM 4174 3212360 - 3212374 + G 74 -2.8 -5.00616 | GTAAAGCAATCAAGC CAGC CGATATT GCTG TTTTTTCACGACAAA TERM 4175 3212687 - 3212713 + G 76 -11 -3.29144 | opp_overlap 3212690, overlap 3212690 AGGCAATGACCTATC CAATAGCCGTAA TTG TTGTGGCTATTG TTGTCACGGGGATCC TERM 4176 3212960 - 3212944 - g 70 -7.3 -4.09685 | opp_overlap 3212956, overlap 3212945 CGCTATGTTCTAAAA CTGCCAA TTA TTGGCAA AATTGTCTATTTATC pilC 3212098 - 3213384 + | type IV pilus biogenesis protein PilC pilD 3213438 - 3214364 + | type IV pilus prepilin peptidase PilD TERM 4177 3214722 - 3214743 + G 72 -8.7 -3.78775 | opp_overlap 3214739 TGTTGTCGTCCCCCC TGCTGCTGG AAAC CCAACAGCA TTTGCTGGTCGACCG coaE 3214376 - 3214993 + | dephospho-CoA kinase CJA_2734 3214993 - 3215214 + | Domain of unknown function (DUF329) family CJA_2735 3216293 - 3215229 - | hypothetical protein TERM 4178 3215734 - 3215680 - G 88 -10.9 -4.08216 | gap 1 GCATCCGTTTTAAAA GCCACCTGATTG-GCACTTGCATCGT ATAA ACGATGCAAGTACGCACGCAGATAAC CCACCCCCTCCCGGT CJA_2736 3216802 - 3216329 - | hypothetical protein CJA_2737 3217567 - 3216839 - | putative lipoprotein TERM 4179 3218995 - 3218980 - g 74 -6 -4.57569 | overlap 3218982 GTACTGGCGCAAAAA CTCCCG CGCC CGGGCG CCTGGATGGATAACC dsbD 3217795 - 3219612 + | c-type cytochrome biogenesis protein TERM 4180 3219670 - 3219709 + F 83 -13.8 -2.62184 | gap 1, opp_overlap 3219703 GTAAAGTTTGTCAAC TTCCTGCATCTTGC-TGTT AAC GGCAAGCAAGATGCAGGGA TCATCTGCCAAAACG aroQ 3219939 - 3220385 + | 3-dehydroquinate dehydratase, type II accB 3220369 - 3220899 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 4181 3221356 - 3221333 - g 83 -5.1 -5.16237 | AAGGCGATGAAAAAA GCCGGGGTC CCTACC GTACCCGGC TCCGACGGCCCATTG accC 3220958 - 3222298 + | acetyl-CoA carboxylase, biotin carboxylase TERM 4182 3222345 - 3222316 - f 86 -12.1 -3.48276 | opp_overlap 3222317, overlap 3222317 TGCTGTGTTACACAA GCGCCCCGGTGTT GCAA AACATCGGGGCGT TTTTATTGTTAATTC TERM 4183 3222317 - 3222344 + F 100 -17.8 -5.3321 | opp_overlap 3222316 3222317 GCTGTGTTACACAAG CGCCCCGGTGTT GCAA AACATCGGGGCG TTTTTATTGTTAATT TERM 4184 3222344 - 3222317 - f 90 -15.6 -2.68823 | opp_overlap 3222317, overlap 3222316 GCTGTGTTACACAAG CGCCCCGGTGTT GCAA AACATCGGGGCG TTTTTATTGTTAATT prmA 3222374 - 3223258 + | ribosomal protein L11 methyltransferase TERM 4185 3223622 - 3223611 - g 70 -7.2 -4.08945 | overlap 3223619 ACTACCTGGTCAAAA CCGG CAAA CCGG CAACTCCACCGGCAT CJA_2743 3223460 - 3224986 + | MJ0042 family finger-like domain protein TERM 4186 3225038 - 3225011 - f 83 -13.6 -2.72344 | opp_overlap 3225017, overlap 3225017 CGCCATGGGTAACGA TAAAAAGCCGGC AGCT ACCGGCTTTTTA TCTACCAGCTCCCTC TERM 4187 3225032 - 3225017 - f 91 -8.2 -4.98255 | opp_overlap 3225017, overlap 3225011 GGGTAACGATAAAAA GCCGGC AGCT ACCGGC TTTTTATCTACCAGC TERM 4188 3225017 - 3225032 + F 88 -7.5 -4.96848 | opp_overlap 3225017 3225011 GGGTAACGATAAAAA GCCGG CAGCTA CCGGC TTTTTATCTACCAGC TERM 4189 3225993 - 3225966 - g 70 -7 -4.02742 | gap 1 CACAAGAACAGCAAA GCCCTCA-TGGAT CGT ATCCAGCGCGGGC TTAAACGGGCACTGG CJA_2744 3225216 - 3226172 + | hypothetical protein TERM 4190 3226241 - 3226264 + F 79 -2.5 -5.63103 | overlap 3226243 ACCCGCTTTTTATCG CTCAAAAAA ACACCA TTTTTTGTG TTTTTTTCGTTCCCA TERM 4191 3226751 - 3226736 - g 70 -3.9 -4.58685 | opp_overlap 3226737 3226742 3226742, overlap 3226737 3226740 AAAGGTGTGTAAAAA GGCAG CGGGTT CCGCC CTGTTACAGGATGAA TERM 4192 3227164 - 3227181 + G 75 -11.3 -2.8733 | overlap 3227163 3227161 AGTTACCCGAACCGC CCCTGAC CCAG GTCAGGG ATATTTTATCGACCC CJA_2745 3226410 - 3227399 + | tRNA-dihydrouridine synthase TERM 4193 3227489 - 3227462 - g 74 -10.6 -3.1355 | gap 1 CCCACCCAGACTCAA GCTCAATCGCTGC GCG GCTGCG-TTGAGC AAGCCGTAGACAACT fis 3227396 - 3227689 + | Hin recombinational enhancer binding protein TERM 4194 3227707 - 3227738 + F 73 -10.3 -3.07685 | gap 1, opp_overlap 3227712, overlap 3227712 GCTGCAGTACCGCAC TAAAAGGGGTGAGC CAAGA GC-CACCCCTTTTG CTTTTGCACCGTTTT TERM 4195 3227712 - 3227733 + F 82 -8 -4.67038 | gap 1, opp_overlap 3227712, overlap 3227707 AGTACCGCACTAAAA GGGGTGAGC CAAGA GC-CACCCC TTTTGCTTTTGCACC TERM 4196 3227733 - 3227712 - f 79 -8.7 -4.2717 | gap 1, opp_overlap 3227712 3227707 AGTACCGCACTAAAA GGGGTGAGCC AAG AGC-CACCCC TTTTGCTTTTGCACC TERM 4197 3228520 - 3228508 - g 79 -4.7 -4.89852 | opp_overlap 3228512, overlap 3228509 3228510 CTACATCGAGAAAAA TCCGG CGC CCGGC ACTATTGCCACCGCC purH 3227792 - 3229369 + | bifunctional purine biosynthesis protein PurH TERM 4198 3229577 - 3229564 - g 74 -8.1 -4.11751 | opp_overlap 3229564 ACCAAGGTTGGAAAA CGTCG CGAT CGACG TGTTGGACTTTGCAG purD 3229379 - 3230716 + | phosphoribosylamine--glycine ligase CJA_2749 3230799 - 3231383 + | hypothetical protein CJA_2750 3232489 - 3231404 - | Zn-dependent protease TERM 4199 3232434 - 3232414 - G 72 -6.8 -4.28994 | opp_overlap 3232414 CACCATTGACCAAAA CCTGTTCG TCACC CGACCAGG GTTTGGCAATAACCT CJA_2751 3232569 - 3233399 + | nucleic acid binding protein TERM 4200 3233546 - 3233526 - g 78 -11.1 -3.54424 | CGCGATCCTGCCAAA GCGCAAGAC TAT GCCCTGCGC CATGGGGTTCCACTC TERM 4201 3233911 - 3233927 + G 70 -10.8 -2.75844 | opp_overlap 3233910 3233909, overlap 3233910 3233922 CCACAGATGATAACT GGCGGG TTAAT CCCGCC CTTTCCGGTGGCGGG CJA_2753 3233403 - 3234404 + | oxidoreductase CJA_2752 3234971 - 3234390 - | hypothetical protein CJA_2754 3235484 - 3234996 - | hypothetical protein TERM 4202 3235248 - 3235260 + g 75 -6.9 -4.37886 | ATTCACAACTTCCAC GCTGG CTT CCGGC TTTTGTCCACGCTGC CJA_2755 3235547 - 3236098 + | hypothetical protein TERM 4203 3236132 - 3236151 + F 79 -2 -5.47399 | overlap 3236134 AATTCCCTGTATTTT TGCTTGCC CACG GGCCGGTA TTTTTTTAAGGTTCA TERM 4204 3236472 - 3236484 + G 83 -5.5 -5.1166 | GGTTTACGGAATGGG CACGG TTT TCGTG TTTTTGATTTTGCTG CJA_2756 3236419 - 3236670 + | oxaloacetate decarboxylase gamma chain oadA 3236684 - 3238465 + | oxaloacetate decarboxylase alpha subunit TERM 4205 3238634 - 3238661 + G 91 -12 -4.09685 | gap 1, overlap 3238627 TTTTGGCGGCCTGCT CGCCA-ACCTGCC AGC GGCTGGTATGGCG TTTTCGGCGATCGAA TERM 4206 3239084 - 3239097 + G 74 -8.1 -4.03234 | TATCGGCGGCGCCGA TGGCC CTAC GGCCA TTTATGTCGCCAGCA CJA_2758 3238476 - 3239786 + | oxaloacetate decarboxylase beta chain TERM 4207 3239813 - 3239843 + T 100 -21.4 -3.21395 | opp_overlap 3239816 3239819, overlap 3239816 3239819 AGCAGTGCCTCTAAC TAATAAGGGCGGTC TCT GACCGCCCTTATTA TGTTGTCCAGGGAGT TERM 4208 3239840 - 3239816 - T 100 -18.7 -3.33815 | opp_overlap 3239813 3239816 3239819, overlap 3239819 AGTGCCTCTAACTAA TAAGGGCGGTC TCT GACCGCCCTTA TTATGTTGTCCAGGG TERM 4209 3239816 - 3239840 + T 100 -18.7 -3.7511 | opp_overlap 3239816 3239819, overlap 3239813 3239819 AGTGCCTCTAACTAA TAAGGGCGGTC TCT GACCGCCCTTA TTATGTTGTCCAGGG TERM 4210 3239837 - 3239819 - T 100 -16 -3.81146 | opp_overlap 3239816 3239813 3239819, overlap 3239816 GCCTCTAACTAATAA GGGCGGTC TCT GACCGCCC TTATTATGTTGTCCA TERM 4211 3239819 - 3239837 + T 100 -16 -4.00486 | opp_overlap 3239819 3239816, overlap 3239816 3239813 GCCTCTAACTAATAA GGGCGGTC TCT GACCGCCC TTATTATGTTGTCCA glu16F 3241366 - 3239858 - | beta glucanase, putative, glu16F cel5G 3243591 - 3241840 - | cellulase, putative, cel5G CJA_2761 3243915 - 3243796 - | hypothetical protein TERM 4212 3244178 - 3244192 + G 71 -2.1 -4.9792 | TGGTTACTATCTCGA TGCAG CCCTA CTGTA TTTTTATATCAAATC CJA_2762 3243918 - 3245090 + | transcriptional regulator, AraC family domain protein TERM 4213 3245125 - 3245103 - T 100 -11.3 -6.28401 | gap 1 TAAAAAATAAAAAAA GCCGCG-GCA AGAT TGCACGCGGC TTGCGCTTAACGGCT glu16E 3249041 - 3245151 - | beta glucanase, putative, gly16E TERM 4214 3245780 - 3245797 + g 71 -9.1 -3.53012 | overlap 3245764 3245754 CCAGGGTCAGTTGCG CCTGGGT ATTG GCCCAGG TTTGCAGGCCGCCGG TERM 4215 3246880 - 3246870 - G 71 -2.4 -4.96501 | opp_overlap 3246873 GTCGATAAAAATAAA CGTC CTC GCCG TCGAGCTGAGTTCGC TERM 4216 3248667 - 3248679 + g 76 -10.5 -3.28712 | opp_overlap 3248665 3248664 CAGCATCCAGAATGC CGGCC ACA GGCCG TTATCCACCCGCGGC CJA_2764 3250505 - 3249333 - | glutathionylspermidine synthase family protein TERM 4217 3249702 - 3249714 + g 73 -9.1 -3.61398 | opp_overlap 3249699 3249702, overlap 3249688 GCGCTGCCATAACAG GGGCA GTA TGCCC TTGTTGGAGAGCAGC CJA_2765 3251087 - 3250509 - | putative lipoprotein CJA_2766 3251526 - 3251113 - | predicted membrane protein TERM 4218 3251624 - 3251606 - H 74 -3.8 -4.9725 | ATTCTGACATAAAAA GCAGGC TCTCCAT ACCTGC GTACCTGGAATCTTC CJA_2767 3251798 - 3252805 + | PEP-CTERM putative exosortase interaction domain protein TERM 4219 3252825 - 3252853 + F 100 -17.6 -5.67063 | opp_overlap 3252825 CACACTTATCCAAAA GCCGCTTTTCGA CGACC TCGAAAAGCGGC TTTTTTTATACTGCC TERM 4220 3252853 - 3252825 - f 100 -17.6 -4.20531 | opp_overlap 3252825 CACACTTATCCAAAA GCCGCTTTTCGA CGACC TCGAAAAGCGGC TTTTTTTATACTGCC TERM 4221 3253580 - 3253609 + G 70 -3.5 -4.63486 | gap 1, opp_overlap 3253578, overlap 3253596 CGGCGGCCAGAAAGG CTTGCACCGTTTGC AAG GCATA-GGTGCCGG TTTTATTCCACAAAT cysK 3252939 - 3253850 + | cysteine synthase A TERM 4222 3253914 - 3253871 - T 100 -16.8 -3.06183 | opp_overlap 3253878 3253904, overlap 3253877 3253878 3253901 GTCACTCGCACTTAA CCAAAACCCGGTCGTCGGTA TTAA CACCAACGACCGGACTCCGG TTTCCATCTGAAAAA TERM 4223 3253908 - 3253877 - T 100 -15.2 -4.43477 | opp_overlap 3253878 3253904, overlap 3253871 3253878 3253901 CGCACTTAACCAAAA CCCGGTCGTCGGTA TTAA CACCAACGACCGGA CTCCGGTTTCCATCT TERM 4224 3253907 - 3253878 - T 100 -16.5 -3.25604 | opp_overlap 3253878 3253904, overlap 3253877 3253871 3253901 GCACTTAACCAAAAC CCGGTCGTCGGTA TTAA CACCAACGACCGG ACTCCGGTTTCCATC TERM 4225 3253904 - 3253914 + T 72 -8.2 -3.70902 | opp_overlap 3253878 3253877 3253871 3253901 TATTAACACCAACGA CCGG ACT CCGG TTTCCATCTGAAAAA abf51A 3255489 - 3253936 - | alpha-L-arabinofuranosidase, abf51A TERM 4226 3255116 - 3255100 - G 81 -4.4 -5.06451 | gap 1, opp_overlap 3255100, overlap 3255101 3255102 CACCAGGTCAAAAAA CTCGTGG GTCC CCACG-G CATTATCCTCTTCCA TERM 4227 3255655 - 3255624 - R 100 -21.6 -4.02022 | GTTAAGCAGGACAAA TTCGCCGCCCCGGC AACC GCTGGGGCGGCGAA TCAGTCAAGAGAAAA man26A 3256944 - 3255673 - | endo-1, 4-beta mannanase, man26A TERM 4228 3256474 - 3256486 + g 70 -6.2 -4.24606 | CCAGGAAGTGCCAAC GGGC CATAC GCCC TTTTGGGTATCGGTT TERM 4229 3256950 - 3256960 + r 72 -3.2 -5.055 | TAGTTTTCATTGTTG TCCT CTC GGGA TTTTTTACGACTTAC CJA_2771 3257520 - 3257173 - | pentapeptide repeat domain protein TERM 4230 3258923 - 3258933 + G 85 -8.2 -4.45664 | TTCCGCACCCTGGGC CCGG ATA CCGG TTTTGATTCCATTGG uxaC 3257984 - 3259399 + | Glucuronate isomerase TERM 4231 3259454 - 3259426 - f 79 -12.6 -2.88118 | gap 1, opp_overlap 3259427 3259433, overlap 3259433 CGAGCTTACAACAAC CGAAAAACCCGGC ATCT GCCGGGTTTTT-G TATTTACCCCTGAGG TERM 4232 3259427 - 3259454 + F 85 -12.8 -3.36515 | opp_overlap 3259426 3259433, overlap 3259433 GAGCTTACAACAACC GAAAAACCCGGC ATCT GCCGGGTTTTTG TATTTACCCCTGAGG TERM 4233 3259448 - 3259433 - f 100 -11.8 -4.82333 | opp_overlap 3259427 3259433, overlap 3259426 ACAACAACCGAAAAA CCCGGC ATCT GCCGGG TTTTTGTATTTACCC TERM 4234 3259433 - 3259448 + F 100 -11.8 -5.19879 | opp_overlap 3259433 3259426, overlap 3259427 ACAACAACCGAAAAA CCCGGC ATCT GCCGGG TTTTTGTATTTACCC CJA_2774 3259475 - 3260407 + | hypothetical protein CJA_2773 3261275 - 3260370 - | regucalcin TERM 4235 3261291 - 3261327 + r 100 -16 -3.14463 | opp_overlap 3261295 3261301, overlap 3261295 3261300 3261301 TGGTGTGACCTATCA CTAACAAAAACGCCCC TACAT GGGGCGCTTTTGTTGG TTACTGAAGACGCTT TERM 4236 3261295 - 3261323 + r 86 -13.2 -3.39895 | opp_overlap 3261295 3261301, overlap 3261291 3261300 3261301 GTGACCTATCACTAA CAAAAACGCCCC TACAT GGGGCGCTTTTG TTGGTTACTGAAGAC TERM 4237 3261323 - 3261295 - R 100 -15.4 -3.22298 | opp_overlap 3261291 3261295 3261300 3261301, overlap 3261301 GTGACCTATCACTAA CAAAAACGCCCC TACAT GGGGCGCTTTTG TTGGTTACTGAAGAC TERM 4238 3261300 - 3261318 + r 82 -7.3 -4.80178 | opp_overlap 3261295 3261301, overlap 3261295 3261291 3261301 CTATCACTAACAAAA ACGCCCC TACAT GGGGCGC TTTTGTTGGTTACTG TERM 4239 3261301 - 3261317 + r 77 -10.8 -3.47023 | opp_overlap 3261295 3261301, overlap 3261300 3261295 3261291 TATCACTAACAAAAA CGCCCC TACAT GGGGCG CTTTTGTTGGTTACT TERM 4240 3261317 - 3261301 - R 100 -10.8 -5.15167 | opp_overlap 3261301 3261300 3261295 3261291, overlap 3261295 TATCACTAACAAAAA CGCCCC TACAT GGGGCG CTTTTGTTGGTTACT CJA_2775 3262924 - 3261347 - | sodium/glucose cotransport protein TERM 4241 3263041 - 3263016 - R 100 -17.7 -3.87373 | CACACTCGCTACAAA CATTCACCCGC CGAA GCGGGTGAATG CAAAGTCAGGAAAAC CJA_2776 3263860 - 3263075 - | short chain dehydrogenase/reductase CJA_2777 3264632 - 3263922 - | transcriptional regulator, GntR family TERM 4242 3264206 - 3264219 + g 75 -5.2 -4.72272 | CCAGCGGATCATCCT GGCC TTCATC GGCC TTTTTCATACGCGCC TERM 4243 3264750 - 3264773 + r 100 -19.6 -3.96216 | opp_overlap 3264750 GTCCAAAAAACAAAA CCCGCGCTCC CTCA GGAGCGCGGG TTATTTAACTAGAGC TERM 4244 3264773 - 3264750 - R 100 -19.6 -5.42198 | opp_overlap 3264750 GTCCAAAAAACAAAA CCCGCGCTCC CTCA GGAGCGCGGG TTATTTAACTAGAGC phoU 3265567 - 3264845 - | phosphate transport system regulatory protein PhoU pstB 3266400 - 3265588 - | phosphate ABC transporter, ATP-binding protein pstA 3268112 - 3266424 - | phosphate ABC transporter, permease protein TERM 4245 3268069 - 3268087 + g 75 -6.7 -4.30441 | gap 1, overlap 3268069 3268075 CAGATCCAGGGCGCG CC-GCTGG CAAA CCAGCCGG TTTTGCGTCTTGTCA pstC 3270427 - 3268142 - | phosphate ABC transporter, permease protein TERM 4246 3269775 - 3269748 - G 76 -4.1 -5.02074 | overlap 3269750 TCACCGGTTAAAAAA TTCTGGCTGCT GGAAAA AGAAGCCAGCA AAATACGTTCATCGG TERM 4247 3270309 - 3270289 - G 70 -3.9 -4.61199 | ATCCCAGAGAGAAAA CGACAGC AATACCA GCCGCCG TAATTCCATAACGGG TERM 4248 3270565 - 3270547 - R 100 -11.7 -5.78622 | GCAGGCTAAAAAAAA CCGCCGA AATCA TCGGCGG CTTCCAATAACCAAG pstS 3271562 - 3270591 - | phosphate binding protein TERM 4249 3270966 - 3270980 + g 70 -7.1 -4.09628 | opp_overlap 3270965 AGAAGCTTTGAAATC GCCCT TACAC AGGGC TTCTTCTTTAAAGTA TERM 4250 3271802 - 3271773 - R 87 -10.8 -4.11394 | opp_overlap 3271778, overlap 3271778 ATTGCACGCGCAAAA CAAAACACCGCC AACAAG GGCGGTGTTTTT AATTCCAGGAACGCG TERM 4251 3271797 - 3271778 - R 100 -10.7 -5.08255 | opp_overlap 3271778, overlap 3271773 ACGCGCAAAACAAAA CACCGCC AACAAG GGCGGTG TTTTTAATTCCAGGA TERM 4252 3271778 - 3271797 + r 100 -10.7 -4.8622 | opp_overlap 3271778 3271773 ACGCGCAAAACAAAA CACCGCC AACAAG GGCGGTG TTTTTAATTCCAGGA sspB 3272246 - 3271827 - | stringent starvation protein B TERM 4253 3272330 - 3272311 - R 100 -15 -5.08255 | opp_overlap 3272311 ACCCTTAAAACAAAA CGGGCGAC TTGC GTCGCCCG TTAGTGCTCATCTGC TERM 4254 3272311 - 3272330 + r 100 -15 -3.24188 | opp_overlap 3272311 ACCCTTAAAACAAAA CGGGCGAC TTGC GTCGCCCG TTAGTGCTCATCTGC petB 3274586 - 3272349 - | ubiquinol--cytochrome c reductase, cytochrome b TERM 4255 3273606 - 3273588 - G 77 -8.8 -4.11183 | GGGCAGCACAAACAA GAGGGCAA TGG CTGCCCCC ATGGCAATGAAACCT petA 3275187 - 3274588 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 4256 3275388 - 3275363 - R 100 -15.5 -5.75599 | opp_overlap 3275363 CAAAGTATAAAAAAA CGCCCAAGCCA TTGA TGACTTGGGCG TTTTTGATCGCCATC TERM 4257 3275363 - 3275388 + r 100 -13.3 -4.72986 | opp_overlap 3275363 CAAAGTATAAAAAAA CGCCCAAGCCA TTGA TGACTTGGGCG TTTTTGATCGCCATC rpsI 3275829 - 3275437 - | ribosomal protein S9 rplM 3276271 - 3275843 - | ribosomal protein L13 CJA_2788 3277500 - 3276361 - | Predicted ATPase CJA_2790 3277632 - 3278132 + | hypothetical protein CJA_2789 3278806 - 3278129 - | hypothetical protein TERM 4258 3278465 - 3278451 - G 77 -3.4 -5.04222 | overlap 3278461 GAACCAAATGAAAAA CCGGCC AAC AGCAGG CGGGACTGCGGGTAA CJA_2791 3278943 - 3279449 + | hypothetical protein TERM 4259 3279447 - 3279472 + F 72 -8.3 -3.72576 | overlap 3279448 AAAGCCAATCGTTAC TGATGGCCTTT TTGC AAAGGCCAGCG TTTGATAACCAAGCC TERM 4260 3279485 - 3279502 + F 100 -14.1 -4.77165 | opp_overlap 3279485 GCGTTTGATAACCAA GCCCCGC CTTT GCGGGGC TTTTATTCTCAGCCC TERM 4261 3279502 - 3279485 - f 90 -14.1 -3.44146 | opp_overlap 3279485 GCGTTTGATAACCAA GCCCCGC CTTT GCGGGGC TTTTATTCTCAGCCC TERM 4262 3279777 - 3279762 - g 85 -10.4 -4.26188 | TGTATACACCGAAAA GCGGGT CATT ACCCGC TATGAAAACTTCCGC TERM 4263 3280607 - 3280591 - g 81 -10.9 -3.59262 | GGCGACATCGTCAAA TTGCGCA TCC TGCGCAA TGGACAGGTACAGGA algW 3279547 - 3280671 + | AlgW protein TERM 4264 3280721 - 3280691 - T 100 -17.6 -2.91429 | opp_overlap 3280694 3280696, overlap 3280681 3280682 GAAAAGCCGCAGACA GCACAGGGGCCGAC ATC ATCGGCCGCTGTGC TATAGAAAAACCTAT TERM 4265 3280694 - 3280718 + T 73 -11.4 -2.62184 | opp_overlap 3280691 3280682, overlap 3280696 AAGCCGCAGACAGCA CAGGGGCCGA CATCA TCGGCCGCTG TGCTATAGAAAAACC CJA_2793 3282330 - 3280741 - | ABC transporter, ATP-binding protein TERM 4266 3282382 - 3282361 - R 100 -11.5 -4.93696 | opp_overlap 3282361 3282360 GTTAAACAGTAAAAA GGCCCGCCC CCGA GAGCGAGCC CTTTGGTTAAAGGCA hisD 3283777 - 3282407 - | histidinol dehydrogenase hisG 3284662 - 3283982 - | ATP phosphoribosyltransferase murA 3285896 - 3284634 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4267 3285929 - 3285915 - R 71 -7 -4.07568 | CTGTCTTGTCTAAAA CGGCCC ATA GGGCTG GAGTCGATACTTGGG CJA_2797 3286196 - 3285945 - | BolA/YrbA family protein TERM 4268 3286359 - 3286333 - R 93 -13.8 -3.62775 | opp_overlap 3286337, overlap 3286337 ACCATCCCTTAAGAA CAAAGCCCCTGG AAT CCAGAGGCTTTA CAAACAGGGCGGAAC TERM 4269 3286355 - 3286337 - R 100 -12.4 -4.44667 | opp_overlap 3286337, overlap 3286333 TCCCTTAAGAACAAA GCCCCTGG AAT CCAGAGGC TTTACAAACAGGGCG TERM 4270 3286337 - 3286355 + r 79 -10.2 -3.53012 | opp_overlap 3286333 3286337 TCCCTTAAGAACAAA GCCCCTGG AAT CCAGAGGC TTTACAAACAGGGCG CJA_2798 3287023 - 3286388 - | Toluene tolerance, Ttg2 superfamily CJA_2799 3287335 - 3287231 - | hypothetical protein CJA_2800 3287334 - 3288305 + | sugar isomerase, KpsF/GutQ family subfamily CJA_2801 3288330 - 3288872 + | phosphatase, YrbI family CJA_2802 3288875 - 3289483 + | hypothetical protein CJA_2803 3289455 - 3289985 + | OstA-like protein superfamily CJA_2804 3289942 - 3290715 + | ABC transporter, ATP-binding protein CJA_2805 3290954 - 3290853 - | hypothetical protein TERM 4271 3291009 - 3291037 + G 71 -9.6 -3.55563 | CACCATGACCCCGCA GTTGCAACAGGC CATTC GCCTATTGCAGC TTTCCACGCTGGACT TERM 4272 3292327 - 3292339 + G 72 -4.7 -4.62336 | overlap 3292328 CAAAAATACATGCAT ACCCC CCA GGGGA TTTTTGAACTCAAGT rpoN 3290956 - 3292584 + | RNA polymerase sigma-54 factor TERM 4273 3292592 - 3292577 - f 72 -6.1 -4.32201 | CCAATGAACGCAAAA GCCTG TAAATC CAGGC CCAATACCCAGGACA yfiA 3292708 - 3292998 + | ribosomal subunit interface protein TERM 4274 3292992 - 3292980 - f 74 -3.3 -5.04733 | CAAGCATAAAGAAAA GTTGC GCA GCCAC CGTTAAGCCACACCA TERM 4275 3293465 - 3293454 - g 72 -7.2 -4.15788 | AATGCGCTCAACAAA GCGG AATA CCGC GATAAATTGCGCGCA ptsN 3293076 - 3293522 + | phosphotransferase enzyme IIA CJA_2809 3293534 - 3294427 + | hypothetical protein TERM 4276 3294453 - 3294441 - g 72 -6.9 -4.28111 | GAGATCATTAACAAA CGCGG CCT CCACG CCCGTGCCGCCGCCA TERM 4277 3294491 - 3294471 - g 74 -9.7 -3.53012 | CGTGCCGCCGCCAAA CTTGCCAGC CTC GCCAGCAAG TTCAAGGCACAGGTG pstH 3294408 - 3294680 + | Phosphocarrier protein HPr (Histidine-containing protein) TERM 4278 3295213 - 3295203 - g 72 -4.6 -4.72007 | CGCGAGGAAAACAAA CCGG CAG CCAG CGCACGCAAGTTATT CJA_2812 3294747 - 3295265 + | hypothetical protein CJA_2811 3299517 - 3295234 - | hypothetical protein TERM 4279 3295532 - 3295515 - G 79 -12.7 -3.02471 | opp_overlap 3295511 TGCTCACCACATAGA TGCCCGC GGCA GCGGGCA GCCCTGTTACCAGTG TERM 4280 3297263 - 3297249 - G 75 -11.4 -3.01924 | CAGGCTCTCCGAACA GGCTGG CAA CCAGCC CCTCACTGGAAAGCC CJA_2813 3301035 - 3299566 - | ribonuclease, Rne/Rng family CJA_2814 3301709 - 3301032 - | septum formation protein Maf CJA_2815 3302149 - 3301664 - | putative rod shape-determining protein MreD mreC 3302979 - 3302149 - | rod shape-determining protein MreC mreB 3304135 - 3303101 - | rod shape-determining protein MreB gatC 3304322 - 3304864 + | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C gatA 3304947 - 3306401 + | glutamyl-tRNA(Gln) amidotransferase subunit A TERM 4281 3307051 - 3307034 - g 81 -6.3 -4.75404 | AAAGGCCAGGAAAAA TTCGGTA CCCG CACCGAA ACCAAAAACCTCAAC TERM 4282 3307722 - 3307708 - g 75 -5.7 -4.59773 | overlap 3307717 GGTTATCGCGAAAAA TCCAC AGCAG GTGGA CAACTACCGCAATGC gatB 3306413 - 3307858 + | glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit subfamily CJA_2821 3307870 - 3308166 + | hypothetical protein TERM 4283 3308202 - 3308190 - f 86 -4.7 -5.46657 | overlap 3308194 CAGTCCAATAAAAAA GGCAG CCA CAGCC ACTGCTGTCCCATAG TERM 4284 3309424 - 3309447 + G 83 -12.4 -3.35996 | opp_overlap 3309425, overlap 3309425 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 4285 3309446 - 3309425 - g 100 -15.9 -5.71983 | opp_overlap 3309424 3309425 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 4286 3309425 - 3309446 + G 95 -15.9 -2.61383 | opp_overlap 3309425, overlap 3309424 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_2822 3308302 - 3309453 + | ISCja2, transposase TERM 4287 3309466 - 3309489 + T 91 -6.6 -5.46657 | opp_overlap 3309463 3309473, overlap 3309468 3309475 TGAGTAGAACTATGG GACAGCAGTG CAGC CACAGCTGCC TTTTTTATTGGCGTG TERM 4288 3309475 - 3309488 + T 74 -8.1 -3.86909 | opp_overlap 3309463 3309473, overlap 3309468 3309466 CTATGGGACAGCAGT GCAGC CACA GCTGC CTTTTTTATTGGCGT CJA_2823 3310167 - 3309514 - | OmpA family protein TERM 4289 3310964 - 3310947 - g 73 -4.1 -4.77165 | CCTGGCAGAACAAAA GGCCA AGGTGATA TGGCC CGGGCATTGCGATTC inlE 3310459 - 3310983 + | internalin E CJA_2825 3311162 - 3311019 - | hypothetical protein CJA_2826 3311297 - 3311175 - | hypothetical protein TERM 4290 3311446 - 3311464 + r 82 -11 -3.64703 | opp_overlap 3311446 TGCTATAAGAAAAAA GGGAGCGA CAT TTGCTCCC TTTACATAGACAGCC TERM 4291 3311464 - 3311446 - R 100 -8.8 -5.55769 | opp_overlap 3311446 TGCTATAAGAAAAAA GGGAGCGA CAT TTGCTCCC TTTACATAGACAGCC purC 3312205 - 3311495 - | phosphoribosylaminoimidazole-succinocarboxamide synthase CJA_2828 3313012 - 3312242 - | metallo-beta-lactamase superfamily domain protein TERM 4292 3312482 - 3312453 - G 81 -12.9 -2.71483 | gap 1 AGATGCCCCCAATGA CCACCCACTCGCTG TTT CAGGGAGTGGG-GG TAAGGGCCATAGGCC CJA_2829 3314260 - 3313013 - | putative lipoprotein TERM 4293 3314298 - 3314272 - R 72 -10.8 -2.8789 | opp_overlap 3314273 3314291, overlap 3314262 CCAAACAGCACCAGA GCTGGCCAGCCT TAA AGGCCAGCCAGT TGCATGGCTGTTTTA TERM 4294 3314273 - 3314297 + r 70 -9.9 -3.11103 | opp_overlap 3314272 3314262, overlap 3314291 CAAACAGCACCAGAG CTGGCCAGCCT TAA AGGCCAGCCAG TTGCATGGCTGTTTT TERM 4295 3314291 - 3314308 + r 74 -7 -4.20042 | opp_overlap 3314272 3314262, overlap 3314273 GCCAGCCTTAAAGGC CAGCCA GTTGCA TGGCTG TTTTAACCTGTTGAT dapA 3315155 - 3314283 - | dihydrodipicolinate synthase TERM 4296 3314631 - 3314617 - G 72 -7 -4.23007 | overlap 3314610 GAGATAATCGCAAAA CCTGGC GGA GCCTGG TCAATGAGCAATCTA TERM 4297 3315240 - 3315279 + r 95 -10.9 -4.62069 | opp_overlap 3315245 3315248, overlap 3315241 CTGAGGCAGGCGCAG CTAAACAAGCGGATTCA GGGGAA TGAACCCGCTTGTTTAC TTTTTGAAATCCAGC TERM 4298 3315241 - 3315278 + r 93 -14.4 -3.3692 | opp_overlap 3315245 3315248, overlap 3315240 TGAGGCAGGCGCAGC TAAACAAGCGGATTCA GGGGAA TGAACCCGCTTGTTTA CTTTTTGAAATCCAG TERM 4299 3315274 - 3315245 - R 90 -13 -3.65351 | opp_overlap 3315241 3315240, overlap 3315248 GCAGGCGCAGCTAAA CAAGCGGATTCA GGGGAA TGAACCCGCTTG TTTACTTTTTGAAAT TERM 4300 3315271 - 3315248 - R 77 -8.9 -3.96216 | opp_overlap 3315241 3315240, overlap 3315245 GGCGCAGCTAAACAA GCGGATTCA GGGGAA TGAACCCGC TTGTTTACTTTTTGA nadA 3316331 - 3315276 - | quinolinate synthetase complex, A subunit TERM 4301 3315717 - 3315736 + g 77 -3.4 -5.14965 | overlap 3315719 ACAGGCCCCATCCCA CAGGAGCA CATC TGCACCGG TTTTTTGCTGGACAT TERM 4302 3316449 - 3316463 + H 81 -8.5 -4.42238 | opp_overlap 3316449 CGAAAAAACAAAAAA GCGCC CTTGC GGCGC TTTTGGTTGCAGTCG TERM 4303 3316463 - 3316449 - H 100 -8.5 -6.04324 | opp_overlap 3316449 CGAAAAAACAAAAAA GCGCC CTTGC GGCGC TTTTGGTTGCAGTCG TERM 4304 3318139 - 3318157 + G 70 -5.9 -4.18494 | AGCCATGAATTGCCG GGTCGCG AGCTG CGCGAAC TTTTGCCTAGCGATG TERM 4305 3318641 - 3318585 - g 72 -4.7 -4.7033 | gap 3, overlap 3318586 3318603 CAATGCAATAGAAAA CTGGCATCTGCATAACCAGGCGATCCCC TCCG GGGAATTGCC-G-TTACACA-ATGCCAA AGGTGAAGAGGTGTG TERM 4306 3319179 - 3319215 + G 100 -12.1 -5.0133 | overlap 3319181 TTTGGACGCAGCACT GGCTGCTGCCGCTGCCG ATA CGGCCTCGACAGCAGAC TTTTTTGAAACCATG TERM 4307 3319181 - 3319213 + G 81 -13.3 -2.75708 | overlap 3319179 TGGACGCAGCACTGG CTGCTGCCGCTGCCG ATA CGGCCTCGACAGCAG ACTTTTTTGAAACCA TERM 4308 3320627 - 3320615 - g 77 -3.4 -5.11613 | overlap 3320603 ACAGCATCGAAAAAA TGCA GCGCT TGCA AGAATTTGGCATTAG CJA_2834 3317059 - 3320979 + | sensory box protein CJA_2835 3321662 - 3320985 - | exsB protein CJA_2836 3322457 - 3321699 - | radical SAM domain protein TERM 4309 3321854 - 3321827 - G 74 -2.6 -5.11033 | gap 1, opp_overlap 3321831 3321843, overlap 3321817 3321828 3321830 3321831 GAGAAGGTGAAAAAA GCACCTCACCTGC GCG GCTGGCGA-GTTC GTACTCATCCAGCTT TERM 4310 3321972 - 3321985 + g 81 -9.5 -4.14739 | ATTGCGCCCCACCTC CCCCG AGCC CGGGG TTTTGAGGTCCATCA TERM 4311 3322290 - 3322269 - G 74 -8.7 -3.87815 | overlap 3322281 CGTCAGGCGCACAAA CACCGTAGG CAAG CCCACAGTG CGCGCCTCACCTTGC CJA_2838 3322519 - 3322833 + | hypothetical protein adrA 3323822 - 3322830 - | YaiC/YhcK/ArdA family protein TERM 4312 3323575 - 3323559 - G 75 -5.7 -4.59511 | overlap 3323561 AACACCGCGTAAAAA CAGGCGA AAG CCGCCAG CTGCAATATTATTCA corA 3325021 - 3324065 - | magnesium and cobalt transport protein CorA htrB 3326103 - 3325138 - | lipid A biosynthesis lauroyl acyltransferase TERM 4313 3325754 - 3325781 + g 70 -4 -4.61566 | gap 1, overlap 3325755 TTTTCGATATGCTCC AGCCCGGTCAGCT CAT AGC-GGCCGCGCA TTTTGTCCTTTGCCC CJA_2841 3326515 - 3326237 - | hypothetical protein CJA_2842 3326504 - 3326653 + | hypothetical protein TERM 4314 3326652 - 3326633 - TR 100 -13.6 -4.67651 | ATATCGGAAAAGAAA CAGGCAGC CGAA GCTGCCTG AATCGAAAATAAAAA TERM 4315 3326690 - 3326668 - TR 86 -4.9 -5.49568 | AATCGAAAATAAAAA CCGGCTAAT AAGGA ATTAACCAG CCACAGCGGCGTCAA CJA_2843 3327000 - 3326683 - | glutaredoxin homolog CJA_2844 3327192 - 3327091 - | hypothetical protein TERM 4316 3327352 - 3327409 + G 100 -20.5 -4.16284 | TGAGGCCCTGTCCAG CCACTACCAGCGCACAGGCAGCTGGGA TGCC TTCCAGCAGCCGGGGCGCTGGGAATGG TTTGTTAACCAATAT TERM 4317 3327566 - 3327588 + G 72 -5.4 -4.46212 | GAACGCTGGATTTTG CGCCTGCGCG CCC TGCGCACCCG TTTTATCCTGCAGGA TERM 4318 3327702 - 3327687 - g 81 -6 -4.77165 | GCCCCGATAACAAAA CCCTGG GATA CCTGGG GACGCCGATCAATCC TERM 4319 3328138 - 3328100 - g 76 -8 -4.18494 | gap 1 CATTTCGACGCAAAA GCCCTGGCGCGCCTGCA GAAACA CGC-GGCGCGCCTGACC CATCTGGTTAACGAT baeS 3327245 - 3328663 + | Sensory transduction histidine kinase TERM 4320 3329240 - 3329206 - g 80 -5.6 -4.96848 | opp_overlap 3329226 CCTGTTACAGAAAAA TGCCTACACTGACCAC CGG GTGGTGAGTGATCGCA CCATGGATTCGCATA TERM 4321 3329343 - 3329286 - g 95 -15.7 -2.92398 | opp_overlap 3329304 3329305, overlap 3329281 AAAAATTACAGCAGA TCCACCCGCAGGAAATTATCCACTC GGTCTATG GAGTGGGTTATCGCCTGCAGGTGGA GTAATCCTCAGGCTT baeR 3328685 - 3329347 + | DNA-binding response regulator TERM 4322 3329578 - 3329594 + G 71 -9.3 -3.45054 | GGGCTTATTTGGCCT GGCCGGC GCA GCAGGCC TTATCAGTTGTGGGG TERM 4323 3329682 - 3329631 - g 74 -10.8 -3.13403 | overlap 3329629 CGTCCGGCAGTAACA GCACCGGCACCAGTAGTGCCACTA CCAG TAGCAGCACCACAAGCTCCAGCGC CACTACCAGCAGTAT CJA_2848 3329453 - 3330310 + | protocatechuate dioxygenase CJA_2847 3332751 - 3330307 - | putative HrpA-like helicase TERM 4324 3330396 - 3330416 + g 79 -4.5 -4.88795 | overlap 3330397 TTTCCGGCCAGGGAT GGCGAGGGT AGC GCCCGCGCA TTTCTTTTCTTACGT TERM 4325 3330762 - 3330751 - G 74 -5.8 -4.56597 | TTGCGCCGTTAAAAA TGGC AACA GCCA ATCATCCAGGTTCGC TERM 4326 3331948 - 3331962 + g 77 -11.4 -3.25823 | CCCCTGCGCCGGGTC CAGCGC ATT GCGCTG TTCCTGTGCCGCAAC TERM 4327 3332122 - 3332133 + g 81 -5.8 -4.77438 | opp_overlap 3332122, overlap 3332126 CAGGGCTCGCAGCAA CTGC GCCG GCAG TTTTTCCTCCTGGCT CJA_2849 3336041 - 3332793 - | two-component system sensor histidine kinase/response regulator, hybrid (one-component system) TERM 4328 3334700 - 3334686 - G 71 -9.2 -3.55761 | CAGGTAGTGGTGAAA CCGGCC GGT GGCCAG GTCGAGTCGATTCAA TERM 4329 3335912 - 3335895 - G 78 -8.3 -4.17516 | opp_overlap 3335894 3335895 GCCAAACCACATAAA GCCCTGG CTAT CCTGGGC CATGGCGTTGATATA TERM 4330 3336125 - 3336110 - R 72 -10.4 -2.89177 | opp_overlap 3336122 3336123, overlap 3336105 AGCTCACACATCAGA TCGCCG ATTA CGGCGA CAAGCTATCGCACAG CJA_2850 3336255 - 3336142 - | hypothetical protein TERM 4331 3336228 - 3336206 - G 100 -19.2 -5.42259 | TCATGCCTAAAAAAA CGCCCTGCCA AAT TGGCAGGGCG CAGTAGTACAGGATG CJA_2851 3338165 - 3336264 - | hypothetical protein TERM 4332 3337152 - 3337138 - G 73 -4.2 -4.79451 | overlap 3337139 AGGGCAAACACAAAA CGCC CCTCACC GGCG TCACCGCCCGCATAA TERM 4333 3338090 - 3338074 - G 81 -9.4 -4.14392 | ACAGCCATACAGAAA CTCGCC GGTAA GGCGAG TGCGAGAAGGTTTGT TERM 4334 3338432 - 3338395 - H 100 -14.3 -5.53436 | gap 1 ACAGAACATAAAAAA GCGCATCCACCACTGTGT ACA AC-CAGCAGTGAATGCGC AGGGGAGGGAAATTA CJA_2852 3338423 - 3338518 + | hypothetical protein CJA_2853 3338546 - 3339652 + | hypothetical protein CJA_2854 3339721 - 3340035 + | IS66 family element, Orf1 protein TERM 4335 3340063 - 3340081 + F 79 -8.8 -4.09864 | overlap 3340078 ATGTACCGGTATACG TACACCGG CAA CCGGTGGA TTTTCGCAAATCCAT TERM 4336 3341409 - 3341399 - g 95 -6.8 -5.40474 | opp_overlap 3341398 3341399 ACCTTGTGAAAAAAA GGGT ATT ACCC ATTTAGCCTGTTGGG TERM 4337 3341944 - 3341926 - g 72 -10.3 -3.36968 | opp_overlap 3341925 3341926 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_2856 3340413 - 3341981 + | IS66 family element, transposase TERM 4338 3342045 - 3342034 - f 73 -2.2 -5.24129 | CCCGTGCATAAAAAA GCCT GCTC AGAC TCACTGCTGTCCCAT TERM 4339 3343269 - 3343292 + G 83 -12.4 -3.35996 | opp_overlap 3343270, overlap 3343270 CCGAATCATAAAAAA AGCGAGCCTC AAAT GAGGCTCGCC TTATGAGTAGAACTA TERM 4340 3343291 - 3343270 - g 100 -15.9 -5.71983 | opp_overlap 3343269 3343270 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT TERM 4341 3343270 - 3343291 + G 95 -15.9 -2.61383 | opp_overlap 3343270, overlap 3343269 CGAATCATAAAAAAA GCGAGCCTC AAAT GAGGCTCGC CTTATGAGTAGAACT CJA_2857 3342147 - 3343298 + | ISCja2, transposase TERM 4342 3343361 - 3343343 - f 83 -6.7 -5.03314 | opp_overlap 3343341 CTTAGCTTTAAAAAA CGCCATA TTGTT CATGGCG TCTAGATTAAGTGGT TERM 4343 3344112 - 3344128 + G 83 -6.5 -5.0133 | opp_overlap 3344097 GTGTATTGTCTGTGA GCGATAC ACT GGATCGC TTTTTTGACAAAGTG TERM 4344 3344790 - 3344800 + G 84 -4 -5.30448 | TATATCACACAGGCG GTAA TCC TTAC TTTTTCTCTTTGTTT CJA_2859 3343796 - 3344938 + | beta-lactamase CJA_2858 3345168 - 3344929 - | hypothetical protein TERM 4345 3345007 - 3344993 - G 70 -5.6 -4.37886 | opp_overlap 3344994, overlap 3344994 TCACCTTCGACAAAA CCCAGG TTC CCTGGT TGATGACGGTTCCCG CJA_2860 3345514 - 3345353 - | hypothetical protein CJA_2861 3345246 - 3345545 + | hypothetical protein CJA_2862 3347294 - 3345711 - | IS66 family element, transposase TERM 4346 3345748 - 3345766 + g 72 -10.3 -3.36968 | opp_overlap 3345748 3345747 TTCCACGGTAATAAT GCCTCGA TCTGT TCGAGGC TTGTCGCATTGGGTA TERM 4347 3346283 - 3346293 + g 95 -6.8 -5.40474 | opp_overlap 3346282 3346283 CCCAACAGGCTAAAT GGGT AAT ACCC TTTTTTTCACAAGGT CJA_2863 3347683 - 3347333 - | IS66 family element, Orf2 protein TERM 4348 3347652 - 3347634 - G 77 -8.8 -4.09864 | overlap 3347620 ATGGATTTGCGAAAA TCCACCGG TTG CCGGTGTA CGTATACCGGCACAT CJA_2864 3347994 - 3347680 - | IS66 family element, Orf1 protein CJA_2865 3349726 - 3348089 - | hypothetical protein TERM 4349 3348610 - 3348634 + g 70 -5.8 -4.1673 | gap 2, overlap 3348610 CAGGCGTATTGTATT G-GGCGG-TTAC CTG GTAATCCGCCGC TTTATTGGCGGCTTG TERM 4350 3349814 - 3349825 + H 78 -5.8 -4.88405 | TATTTTTTGCCCTGG CCAC CATT GTGG TTTTGTTTCAGGATT CJA_2866 3349822 - 3350259 + | hypothetical protein TERM 4351 3350335 - 3350298 - T 100 -9.9 -5.26316 | TTACTCCATAAAAAA GCGCATCTACCAGCG TAAACAAC CACTGGAAAATGCGC AGGGGGAGGGGAACA TERM 4352 3350357 - 3350383 + T 74 -8.7 -3.83844 | AGGGGAACATCATGC GGCCGATCC TGGCAGTGT GGGTCGGCC TTGTTAGTTAATCGC TERM 4353 3350428 - 3350414 - T 73 -11.4 -2.62267 | overlap 3350413 3350411 3350423 GCTAGAAAGCAATAT CCAGGG AAA CCCTGG CCAGACGCCCGGGTG CJA_2867 3352271 - 3350400 - | putative TonB-dependent receptor protein TERM 4354 3351731 - 3351750 + g 75 -11.4 -2.84795 | overlap 3351733 GACTCCCCGCCTGAC CGGTGGCG GCTA TGCCACCG CTTTCATAACCCTTT CJA_2868 3353737 - 3352355 - | Tat (twin-arginine translocation) pathway signal sequence domain protein TERM 4355 3352761 - 3352771 + g 74 -8.2 -3.93288 | overlap 3352750 CCCACCGTGCCGCCC GCCG GAT CGGC TTTAATTCCCTGGGC cbp26A 3360599 - 3353766 - | carbohydrate binding protein, putative, cbp26A TERM 4356 3357794 - 3357804 + g 78 -5.4 -4.7497 | opp_overlap 3357794 GGGGCGGTTCAAAAT CTGT TGC ACAG TTTTTAGTAGGTGCG TERM 4357 3359647 - 3359626 - G 100 -8 -5.4593 | TCAAAACAATAAAAA CTGCCACG TTGGGT CATGGCAG CACCCGGCCAGGCGG CJA_2870 3360866 - 3360747 - | hypothetical protein CJA_2871 3360659 - 3360835 + | hypothetical protein TERM 4358 3361283 - 3361253 - TR 73 -10.4 -3.0263 | AGGACTTTGGTAACA GCGGCGGTATGCCA CAC TGGCATACCGCAAG TGAAACATCAGGGAA agd31A 3363669 - 3361291 - | alpha-glucosidase, putative, adg31A TERM 4359 3361779 - 3361795 + g 84 -3.5 -5.252 | AGGCATACCAGTTAC CCGGCGG CAG CCACAGG TTTTTTGTGCCGGTA TERM 4360 3362809 - 3362831 + g 100 -9.8 -5.00616 | opp_overlap 3362809 ATGATCCAGGGGAAA TCCCGCAGCG CGG TGCTGCCGGA TTTTTTCCCGCCACC TERM 4361 3362831 - 3362809 - G 73 -9.1 -3.61356 | opp_overlap 3362809 ATGATCCAGGGGAAA TCCCGCAGC GCGGT GCTGCCGGA TTTTTTCCCGCCACC TERM 4362 3363025 - 3363002 - G 71 -2.2 -4.89054 | overlap 3363003 GCGATAAAAAAATAA TCCAGCCGCG CTCG CTCGCCAGGA TTGGCCAAGCCCAGG CJA_2873 3365943 - 3363895 - | iron transporter TERM 4363 3366057 - 3366076 + rH 84 -7.8 -4.77036 | GTGAGCTAGTCAGTA CGTCCACG CTTG CGTCGACG TTTTTCCTCGTAAAG CJA_2874 3368350 - 3366047 - | GGDEF domain protein CJA_2875 3368331 - 3368441 + | hypothetical protein TERM 4364 3369806 - 3369772 - g 70 -3.5 -4.68424 | gap 1, opp_overlap 3369773 CAATTCACTGAAAAA CCGGGTGGC-GCGT ATTACCCA ACGCAGCTACCAGG CTCACCAGATTACGC CJA_2876 3368630 - 3371095 + | putative two-component, response regulator TERM 4365 3371887 - 3371867 - g 88 -11.1 -4.08216 | overlap 3371884 GTACCTGCGGTAAAA GCCGCGCTG GCA CAGCACGAC AATATCGTTGCCATA TERM 4366 3372076 - 3372064 - g 73 -9.1 -3.65812 | opp_overlap 3372062 3372059 TGCGTTCCAACATAA CGGCA TAC TGCCG GATGTATTGACCACC CJA_2877 3371369 - 3372532 + | argD acetylornithine aminotransferase TERM 4367 3372558 - 3372537 - f 100 -15.1 -3.93256 | CAGAGTTTTAAACAA GCGCGCGCA ATAA CGCGCGCGC TGCAATAAAAGAGCA TERM 4368 3372693 - 3372676 - g 72 -8.4 -3.76952 | opp_overlap 3372690 GCCATCGAACTCAAA GCCCTG CTCCGC CAGGGC AAAGCACCAGCCCTA argF 3372580 - 3373497 + | ornithine carbamoyltransferase CJA_2879 3374020 - 3374493 + | hypothetical protein TERM 4369 3374544 - 3374571 + T 82 -13.5 -2.87881 | opp_overlap 3374550, overlap 3374547 3374550 GTTGCATGACCACTG CAACGAGCCCC GCGTCA GGGGCTTGTTG TCTCTCAAACACTTA TERM 4370 3374547 - 3374568 + T 72 -9.4 -3.58726 | opp_overlap 3374550, overlap 3374544 3374550 GCATGACCACTGCAA CGAGCCCC GCGTCA GGGGCTTG TTGTCTCTCAAACAC TERM 4371 3374550 - 3374565 + T 71 -7.5 -3.92996 | opp_overlap 3374550, overlap 3374547 3374544 TGACCACTGCAACGA GCCCC GCGTCA GGGGC TTGTTGTCTCTCAAA CJA_2880 3375625 - 3374576 - | hypothetical protein TERM 4372 3374651 - 3374663 + g 74 -7.7 -4.02163 | overlap 3374660 TCCGGAGTTGGCAAT TTCGC CCA GCGAA TTGTTATTCGTATCT TERM 4373 3375308 - 3375323 + g 71 -9 -3.55084 | overlap 3375303 GGGGCCCGCCCCCTC CCCAAG GGTA CTTGGG TCTTTCATATTCAAG TERM 4374 3375671 - 3375660 - R 73 -2.2 -5.1167 | AATTCAATAGAAAAA GGCT AACC AACC CTGTAGCGGCAAAAA CJA_2881 3377310 - 3375796 - | tryptophan halogenase TERM 4375 3376718 - 3376729 + g 81 -4.4 -5.08601 | opp_overlap 3376704 3376718 AGGCTTTTAATAAAA CCAT TGTC ATGG TTTTTATTGACCTGG TERM 4376 3376729 - 3376718 - G 72 -4.4 -4.63486 | opp_overlap 3376718, overlap 3376704 AGGCTTTTAATAAAA CCAT TGTC ATGG TTTTTATTGACCTGG TERM 4377 3377389 - 3377361 - R 100 -16.2 -4.4891 | opp_overlap 3377366, overlap 3377366 GGTACTACCATAAAA CAAAAGCACAGC TATAC GCTGTGCTTTTG CCGTAAGTACATCAT TERM 4378 3377384 - 3377366 - R 100 -10.3 -5.20781 | opp_overlap 3377366, overlap 3377361 TACCATAAAACAAAA GCACAGC TATAC GCTGTGC TTTTGCCGTAAGTAC TERM 4379 3377366 - 3377384 + r 87 -10.3 -4.14739 | opp_overlap 3377366 3377361 TACCATAAAACAAAA GCACAGC TATAC GCTGTGC TTTTGCCGTAAGTAC CJA_2882 3380435 - 3377427 - | TonB-dependent receptor TERM 4380 3378975 - 3378958 - G 70 -4.2 -4.62069 | opp_overlap 3378971 TCGCGATTGGAAAAA CGTAAA CCTGTT TTTACG CCGGTAATCCATTGG TERM 4381 3379851 - 3379865 + g 72 -7.8 -3.86194 | overlap 3379863 CTTGACAGTGACCCC GGCGGT AAA ACCGTC TTTATCAAAAGGCTT CJA_2883 3380591 - 3380686 + | hypothetical protein lmt23D 3382128 - 3381373 - | lytic murein transglycosylase, putative, lmt23D CJA_2885 3382832 - 3382332 - | hypothetical protein CJA_2886 3385344 - 3382948 - | DNA polymerase II TERM 4382 3383851 - 3383825 - G 100 -4.4 -5.52384 | gap 1, overlap 3383826 CGCGGATCAAAAAAA CGGCATCC-GG TTGAGC CCAGGACGCCA TAGAAGGAATTCATA TERM 4383 3384744 - 3384733 - G 95 -5.8 -5.4492 | GATACATACAAAAAA TGCC TCAA GGCA AGTCCTTTCATCGCT TERM 4384 3385237 - 3385224 - G 100 -5.9 -6.09888 | GTGCAATAAAAAAAA CGACC TCCT GGCCG GTAACCTGGGTCCAG TERM 4385 3385470 - 3385426 - R 100 -10 -5.16572 | gap 2, opp_overlap 3385427 3385428, overlap 3385428 3385429 ACCCAACGGAAAAAA CACCGGGGCTCCGGCTTTGCCA TCA CGGCAAGGG-GGAGCCCCG-CG CAACCAGTGGAGAGA TERM 4386 3385469 - 3385428 - R 91 -11.5 -4.20888 | gap 1, opp_overlap 3385427 3385428, overlap 3385426 3385429 CCAACGGAAAAAACA CCGGGGCTCCGGCTTTGCCA TCA CGGCAAGGG-GGAGCCCCGC GCAACCAGTGGAGAG TERM 4387 3385468 - 3385429 - R 93 -15 -3.11448 | gap 1, opp_overlap 3385428 3385427, overlap 3385428 3385426 CAACGGAAAAAACAC CGGGGCTCCGGCTTTGCCA TCA CGGCAAGGG-GGAGCCCCG CGCAACCAGTGGAGA gla67A 3387693 - 3385495 - | alpha-glucuronidase, gla67A TERM 4388 3385534 - 3385562 + g 77 -7.3 -4.55023 | overlap 3385536 TGCCGGATGCCAGGG TTCGGGCACGTAC GTA GTACGCGCCAGCA TTTTGTAATATTCCA TERM 4389 3386306 - 3386327 + g 77 -8.7 -4.09739 | opp_overlap 3386304 3386301 3386306 CCCGGATTAATCACA CCGGCCATA CCGG TATGGCGGG TTTTAAACACCTTGC TERM 4390 3387535 - 3387549 + g 75 -4.3 -4.79667 | ATCGCCCGCCACATG CAGAT GACGA ATCTG TTTTTGGTAGGTTTT TERM 4391 3387702 - 3387716 + H 72 -8.6 -3.81 | opp_overlap 3387701 TGGACATAACTTAAC TCAACC CCT GGTTGA TTATTATCGGATAGT xyn10D 3387875 - 3389011 + | endo-1,4-beta-xylanase, xyn10D TERM 4392 3389051 - 3389009 - T 77 -9.1 -3.9392 | opp_overlap 3389017, overlap 3389012 3389017 3389019 CTGGATTTGAAACAA TAATCCAACAGCCCCCGGG GAAAA CCCGGGGGCAATCTCATTA CCAACGCATTTTTTC TERM 4393 3389017 - 3389043 + T 72 -10.7 -2.90075 | opp_overlap 3389017 3389012 3389009 3389019 GAAACAATAATCCAA CAGCCCCCGGG GAAAA CCCGGGGGCAA TCTCATTACCAACGC TERM 4394 3389043 - 3389017 - T 86 -12.9 -3.35237 | opp_overlap 3389017, overlap 3389012 3389009 3389019 GAAACAATAATCCAA CAGCCCCCGGG GAAAA CCCGGGGGCAA TCTCATTACCAACGC TERM 4395 3389041 - 3389019 - T 100 -17.7 -3.22425 | opp_overlap 3389017, overlap 3389017 3389012 3389009 AACAATAATCCAACA GCCCCCGGG GAAAA CCCGGGGGC AATCTCATTACCAAC axe2B 3390152 - 3389049 - | acetyl xylan esterase, putative, axe2B TERM 4396 3389567 - 3389595 + g 82 -2.3 -5.40072 | overlap 3389568 CATTCAGGTTGCGCG CCGTAATTGCGCC ATA GGCCCAATAATGA TTTTTTTCCGACAGC TERM 4397 3389985 - 3389999 + g 73 -11.4 -2.57344 | opp_overlap 3389987, overlap 3389984 3389987 GGTACCCGGCCAGGA CAGGCG CGG CGCCTG CTTATCGGAAAAATC CJA_2890 3390280 - 3390149 - | hypothetical protein TERM 4398 3390260 - 3390287 + g 100 -12.6 -5.0133 | opp_overlap 3390260 GGAGGCAATAAAAAA CGGGGCGGCGAA TTTC TCCACCGCCCCG TTTTTTACACGAGTG TERM 4399 3390287 - 3390260 - G 100 -17 -5.4833 | opp_overlap 3390260 GGAGGCAATAAAAAA CGGGGCGGCGAA TTTC TCCACCGCCCCG TTTTTTACACGAGTG CJA_2891 3392493 - 3390304 - | catalase/peroxidase HPI TERM 4400 3390537 - 3390595 + g 75 -5.2 -4.72272 | opp_overlap 3390556 3390572 ATTGGTAGGCCATAT CGGTGAGGTTAACGAAGAAGTCGTTG CTTAACA CACCGACCTTATCGGTAAACACACCG TTTTTGCTGCCGCCG ugpQ 3393445 - 3392729 - | Glycerophosphoryl diester phosphodiesterase TERM 4401 3393481 - 3393495 + G 77 -3.4 -5.06414 | AAAATTTGGAAAGAT GGCAGC ATA GCAGTC TTTTTATTGACACCC CJA_2893 3393460 - 3393552 + | hypothetical protein TERM 4402 3393945 - 3393933 - g 70 -6.3 -4.2717 | overlap 3393944 ATGACCGCATTAAAA TCCTT GAT AAGGA CGATGACATCAGTGG CJA_2894 3393545 - 3394114 + | Small-conductance mechanosensitive channel TERM 4403 3394133 - 3394164 + TF 100 -17.4 -3.93401 | opp_overlap 3394133 3394139, overlap 3394139 AACCTGTCGCGCAAA GGAAAAGGGGCGAT GTGT AGCGCCCCTTTTCC TTATTGGTTTGTAAA TERM 4404 3394164 - 3394133 - Tf 100 -17.4 -3.53343 | opp_overlap 3394133 3394139, overlap 3394139 AACCTGTCGCGCAAA GGAAAAGGGGCGAT GTGT AGCGCCCCTTTTCC TTATTGGTTTGTAAA TERM 4405 3394158 - 3394139 - Tf 86 -9.2 -4.54727 | opp_overlap 3394139 3394133, overlap 3394133 TCGCGCAAAGGAAAA GGGGCGAT GTGT AGCGCCCC TTTTCCTTATTGGTT TERM 4406 3394139 - 3394158 + TF 89 -9.2 -4.58644 | opp_overlap 3394133 3394139, overlap 3394133 TCGCGCAAAGGAAAA GGGGCGAT GTGT AGCGCCCC TTTTCCTTATTGGTT maspC 3395572 - 3394193 - | aspartate aminotransferase cobT 3395525 - 3396625 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 4407 3397099 - 3397111 + G 76 -7.7 -4.26622 | overlap 3397108 TTGTCGCGCGCTGTA TCAGG CAG CCTGA TTTTCAGTATGGTTT TERM 4408 3397206 - 3397218 + G 100 -9.1 -5.83211 | ATTCATCCTGTTACT GGGCA TAC TGCCC TTTTTTGTTTTACTG cobS 3396652 - 3397398 + | cobalamin 5'-phosphate synthase TERM 4409 3397747 - 3397723 - g 75 -11.4 -2.91276 | gap 1, overlap 3397722 CCTTTTGGGATAAAC CCGCCGAG-GC TGCC GCACCCGGCGG TGAAACACTGGCGCA CJA_2898 3397395 - 3398006 + | fructose-2;6-bisphosphatase TERM 4410 3398980 - 3398996 + G 77 -2.9 -5.14563 | AGCCTGGGTATGGCA CTGACGT TGC GCGTGAG TTTTTTAGTGGGGGC TERM 4411 3399157 - 3399182 + G 83 -5.3 -5.09426 | gap 1, overlap 3399148 GCCGTACAGGCCGTC GCGGCCAAGCTC TTT GTACT-GGCCGC TTTTTTCCAATTGGC CJA_2900 3398041 - 3399474 + | MATE efflux family protein CJA_2899 3400234 - 3399446 - | HAD-superfamily subfamily IIA hydrolase, TIGR01458 TERM 4412 3399763 - 3399779 + g 85 -6.6 -4.82901 | CCTTAAGCCCGTCAG CCGTTT GCCAA AAACGG TTTTTATGCAGCGCA TERM 4413 3401273 - 3401261 - g 75 -5.5 -4.66833 | CGGGAACTGGAAAAA CTCGG CTA CCAAG TACTGCCCTCCCAGG hisC 3400415 - 3401467 + | histidinol-phosphate aminotransferase TERM 4414 3401508 - 3401477 - T 100 -18.9 -3.68827 | opp_overlap 3401477 3401483, overlap 3401483 TATTGATCACTCAAA CAAAAACCCCGGC ACTTTG GCCGGGGTTTTTG TTTCATACCAAGCGC TERM 4415 3401477 - 3401508 + T 100 -18.9 -3.72576 | opp_overlap 3401477 3401483, overlap 3401483 TATTGATCACTCAAA CAAAAACCCCGGC ACTTTG GCCGGGGTTTTTG TTTCATACCAAGCGC TERM 4416 3401483 - 3401502 + T 100 -12.1 -5.33405 | opp_overlap 3401477 3401483, overlap 3401477 TCACTCAAACAAAAA CCCCGGC ACTTTG GCCGGGG TTTTTGTTTCATACC TERM 4417 3401502 - 3401483 - T 100 -12.1 -5.30616 | opp_overlap 3401483 3401477, overlap 3401477 TCACTCAAACAAAAA CCCCGGC ACTTTG GCCGGGG TTTTTGTTTCATACC CJA_2902 3403878 - 3401530 - | putative lipoprotein TERM 4418 3403063 - 3403106 + g 81 -13 -2.61695 | gap 1, overlap 3403062 3403060 CCCGGCGGCAATCTG GGCTG-CCGCCACCGCCGCGC GTG GCGCGGCCATGGCGATCAGCG GTGTTTGCGGATCGG TERM 4419 3404096 - 3404073 - R 100 -15.4 -4.41633 | opp_overlap 3404077, overlap 3404077 TACCGCTAAAAACAA CAAAGGAGGC AAAT GCCTCCTTTG AAAACAGAATTGCCA TERM 4420 3404092 - 3404077 - R 100 -10.4 -4.76802 | opp_overlap 3404077, overlap 3404073 GCTAAAAACAACAAA GGAGGC AAAT GCCTCC TTTGAAAACAGAATT TERM 4421 3404077 - 3404092 + r 79 -10.4 -3.53343 | opp_overlap 3404077 3404073 GCTAAAAACAACAAA GGAGGC AAAT GCCTCC TTTGAAAACAGAATT parE 3406007 - 3404118 - | DNA topoisomerase IV, B subunit CJA_2904 3406622 - 3406047 - | hypothetical protein uvs099 3407415 - 3406633 - | Uvs099 TERM 4422 3406920 - 3406906 - G 83 -5.6 -5.09173 | opp_overlap 3406908, overlap 3406908 CAACACTGCAAAAAA CGCATC GGC GTTGCG CACTATGTATTGGTC CJA_2906 3407637 - 3407530 - | hypothetical protein uvs098 3408137 - 3407643 - | Uvs098 CJA_2908 3408863 - 3408234 - | conserved hypothetical protein TIGR00052 thiC 3410787 - 3408877 - | thiamin biosynthesis protein ThiC TERM 4423 3410145 - 3410120 - G 70 -4.7 -4.4648 | ATTTTCACCAGAAAA TTGCGGCCAAT AATC ATTGGCTCCAA CTCGACGTGGTTGAT thiD 3411634 - 3410831 - | phosphomethylpyrimidine kinase TERM 4424 3411851 - 3411821 - R 87 -11.2 -3.84825 | opp_overlap 3411829 3411845 GGGAGGGAGAGTAAA GCAAGGGACAGG GCGAAAG CCTGTCCCTTCC CGATTGGTCAGGGTT CJA_2911 3413094 - 3411859 - | putative pH regulated Na(+)/H(+) antiporter TERM 4425 3412252 - 3412222 - G 75 -4.6 -4.73614 | opp_overlap 3412222 3412231 TAGGATGAAAATAAA CATGCGCATCAGCA ATG CGGTGTTGCCCATG TAGTCTTCCAGGTAT TERM 4426 3412595 - 3412575 - G 77 -11.9 -3.16971 | opp_overlap 3412588 3412590, overlap 3412585 3412586 CCATGACATACCCAA CCACCGCAA AGG TTGCGATGG CCCCCATGGCATCGT TERM 4427 3413238 - 3413196 - R 100 -17.9 -4.07568 | opp_overlap 3413197 3413210 3413237, overlap 3413180 3413197 3413200 3413210 TCGCGCCCCTGAAAA CGGACGCAAAAAAACCGGG GGAAA CCCGGTTTTTTTGCGTGCC TGTGATACCGGTCCT TERM 4428 3413237 - 3413197 - R 100 -21.4 -3.04398 | opp_overlap 3413197 3413210, overlap 3413180 3413196 3413200 3413210 CGCGCCCCTGAAAAC GGACGCAAAAAAACCGGG GGAAA CCCGGTTTTTTTGCGTGC CTGTGATACCGGTCC TERM 4429 3413197 - 3413238 + r 100 -21.2 -2.79302 | gap 1, opp_overlap 3413180 3413196 3413197 3413200 3413210, overlap 3413210 3413237 CGCGCCCCTGAAAAC GG-ACGCAAAAAAACCGGG GGAAA CCCGGTTTTTTTGCGTGCC TGTGATACCGGTCCT TERM 4430 3413234 - 3413200 - R 100 -21.7 -2.74605 | opp_overlap 3413197 3413210, overlap 3413180 3413197 3413196 3413210 GCCCCTGAAAACGGA CGCAAAAAAACCGGG GGAAA CCCGGTTTTTTTGCG TGCCTGTGATACCGG TERM 4431 3413210 - 3413224 + r 100 -8.5 -5.47821 | opp_overlap 3413200 3413197 3413196 3413210, overlap 3413197 ACGGACGCAAAAAAA CCGGG GGAAA CCCGG TTTTTTTGCGTGCCT TERM 4432 3413224 - 3413210 - R 100 -8.5 -5.47821 | opp_overlap 3413210 3413197, overlap 3413200 3413197 3413196 ACGGACGCAAAAAAA CCGGG GGAAA CCCGG TTTTTTTGCGTGCCT CJA_2912 3414515 - 3413256 - | putative Na+/H+ antiporter NhaD TERM 4433 3414637 - 3414614 - H 75 -3 -5.25699 | overlap 3414615 ATGACATAATAAAAA TGCGCCAATC CATC AAATGGCGCG CATGATAAGAGCCCC opmH 3415047 - 3416465 + | outer membrane efflux protein TERM 4434 3416481 - 3416514 + F 100 -15.5 -5.95946 | opp_overlap 3416481 ACGCATTTCACATAA CCGGCAATCTTCTTA TCCA TAAAAAGATTGCCGG TTTTTTTATTCTTGC TERM 4435 3416514 - 3416481 - f 100 -17.7 -3.50572 | opp_overlap 3416481 ACGCATTTCACATAA CCGGCAATCTTCTTA TCCA TAAAAAGATTGCCGG TTTTTTTATTCTTGC TERM 4436 3417326 - 3417314 - g 81 -6.2 -4.81851 | AGCGAAAGCCAAAAA CCCG TATTC CGGG TAGAAAATGGCGCGA TERM 4437 3417506 - 3417484 - g 72 -7.6 -3.92522 | overlap 3417486 TGTTAATGCCAGAAA CATCACTGGC TAT GCCGGTGAAG ACAAATTTATCCAGG pel3C 3416834 - 3417781 + | pectate lyase, putative, pel3C TERM 4438 3417811 - 3417846 + T 100 -23.6 -4.67942 | opp_overlap 3417820, overlap 3417820 TTAATAATTAGTAGC CATAAAAAACGCCGGG CTGC CCCGGCGTTTTTTATG TTTTAATTTATTCCA TERM 4439 3417837 - 3417820 - T 100 -14.1 -5.28778 | opp_overlap 3417811 3417820 AGTAGCCATAAAAAA CGCCGGG CTGC CCCGGCG TTTTTTATGTTTTAA TERM 4440 3417820 - 3417837 + T 100 -14.1 -5.63645 | opp_overlap 3417820, overlap 3417811 AGTAGCCATAAAAAA CGCCGGG CTGC CCCGGCG TTTTTTATGTTTTAA CJA_2915 3420082 - 3417896 - | BNR/Asp-box repeat domain protein TERM 4441 3420088 - 3420076 - G 91 -3.3 -5.49569 | GAGCAATATAAAAAA CAGAC ATC GTCGG CCCTTCTGCAGACAG kdt30A 3421578 - 3420286 - | KDO transferase, putative, kdt30A TERM 4442 3421084 - 3421073 - G 76 -3.6 -4.91712 | GTCAATGCAGAAAAA CGGC GATA GCCA CGCGCTGATTTTTCG TERM 4443 3421467 - 3421454 - G 76 -3.8 -4.99665 | GAAAAAAAACCAAAA CGCT CAGCCC AGCG CTTACGATATGCCGG CJA_2917 3422532 - 3421582 - | putative mutT protein TERM 4444 3422458 - 3422491 + g 70 -5.9 -4.19817 | CTGATGGGCGTCTGC TGCGCGCTGTGCGAT GAAA ATCTCACCGCATGCA TTTTGAATAACTCCC argJ 3423781 - 3422561 - | arginine biosynthesis bifunctional protein ArgJ TERM 4445 3423204 - 3423226 + g 72 -8.4 -3.78775 | opp_overlap 3423204 TCTGTAGCGATATAA CCCAGCATGG TGG CCATATTGGG TTTAATCATCCCCGC TERM 4446 3423836 - 3423861 + r 82 -3.1 -5.47821 | opp_overlap 3423837 3423840, overlap 3423837 3423840 TGCTAACCAATATAA AGAAGGGCGCA AAAT TGCGCCCTGAG TTTTTTTACCTGACT TERM 4447 3423860 - 3423837 - R 72 -6.6 -4.2772 | opp_overlap 3423837 3423836 3423840, overlap 3423840 GCTAACCAATATAAA GAAGGGCGCA AAAT TGCGCCCTGA GTTTTTTTACCTGAC TERM 4448 3423840 - 3423857 + r 80 -12.7 -2.99859 | opp_overlap 3423837 3423840, overlap 3423837 3423836 AACCAATATAAAGAA GGGCGCA AAAT TGCGCCC TGAGTTTTTTTACCT TERM 4449 3423857 - 3423840 - R 95 -12.7 -4.24283 | opp_overlap 3423840 3423837 3423836, overlap 3423837 AACCAATATAAAGAA GGGCGCA AAAT TGCGCCC TGAGTTTTTTTACCT secA 3426625 - 3423878 - | preprotein translocase, SecA subunit TERM 4450 3424717 - 3424727 + g 72 -6.8 -4.19704 | overlap 3424723 3424724 TGCGCCCCTCTACCT TGCG TTG CGCA TTTTCAATCGCGTTA TERM 4451 3426495 - 3426514 + g 70 -3.6 -4.66833 | TCTGTTGTCTTTTCC TTGAGC TGTTCATC GCTCAA TTTTTGCAGTTCCGG TERM 4452 3426571 - 3426584 + g 74 -3.1 -5.00616 | overlap 3426566 CCTTGCCCATGCGCT TGAGT TCGC GCTCA TTTTTTGAGCCAAAA TERM 4453 3426701 - 3426682 - R 86 -4.2 -5.47159 | opp_overlap 3426682 CTGAATAAACAAAAA TTCCCACC ATAC AGAGGGAA TTTTGCCGGAAGGTT CJA_2920 3427728 - 3426799 - | peptidase TERM 4454 3426906 - 3426921 + g 70 -6.1 -4.1552 | CTGTTGAACCGGAGA GGGCA ATAACC TGCCC TTTCTTAACCACATC lpx11A 3428937 - 3428026 - | UDP-3-0-acyl N-acetylglucosamine deacetylase, putative, lpx11A CJA_2922 3429206 - 3429045 - | hypothetical protein TERM 4455 3429144 - 3429094 - GH 100 -21.4 -3.98173 | opp_overlap 3429102, overlap 3429095 3429097 TGAAATGCAATCAAA CGATCAAACCGGGTCATCTGTG GGTGTGG CACAGATGGCCCGGTTTGATCC ACAAATTTACAACGA TERM 4456 3429143 - 3429095 - GH 100 -24.9 -2.98181 | opp_overlap 3429102, overlap 3429094 3429097 GAAATGCAATCAAAC GATCAAACCGGGTCATCTGTG GGTGTGG CACAGATGGCCCGGTTTGATC CACAAATTTACAACG TERM 4457 3429141 - 3429097 - GH 100 -21.7 -3.03282 | opp_overlap 3429102, overlap 3429095 3429094 AATGCAATCAAACGA TCAAACCGGGTCATCTGTG GGTGTGG CACAGATGGCCCGGTTTGA TCCACAAATTTACAA TERM 4458 3429102 - 3429136 + gH 100 -18 -3.73072 | opp_overlap 3429097 3429095 3429094 AATCAAACGATCAAA CCGGGTCATCTGTG GGTGTGG CACAGATGGCCCGG TTTGATCCACAAATT CJA_2924 3429113 - 3429223 + | hypothetical protein ftsZ 3430395 - 3429220 - | cell division protein FtsZ TERM 4459 3430463 - 3430473 + r 73 -4 -4.78981 | ATTAAAAATTACTCT GAAA CAT TTTC TTTATTTTGCTTAAT ftsA 3431687 - 3430449 - | cell division protein FtsA TERM 4460 3431300 - 3431286 - G 70 -4.2 -4.7254 | overlap 3431287 ATCGTCGATCAAAAA CTCCTG CGG CAGGAT ATGCAAAATTTTCTG ftsQ 3432854 - 3431730 - | FtsQ CJA_2927 3433844 - 3432858 - | D-alanine--D-alanine ligase murC 3435305 - 3433881 - | UDP-N-acetylmuramate--alanine ligase TERM 4461 3435273 - 3435247 - G 72 -5.9 -4.38712 | gap 1, overlap 3435214 3435251 CCGATGCCGATAAAA TGA-ATGCGTCG AATA CGGCGCATCTCA GGCACTTCATATGCA mur28A 3436389 - 3435298 - | mur beta-N-acetylglucosaminyltransferase, putative, mur28A ftsW 3437585 - 3436386 - | cell division protein FtsW murD 3438949 - 3437582 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 4462 3437704 - 3437658 - G 100 -13.6 -4.46493 | TTAAACATATCAAAA CTGGCACAGGCGGGAGATAACA ACA CGGCATCACCCGCCGTTGCCAG TGCAAGCGACAGGTT mraY 3440036 - 3438954 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 4463 3439202 - 3439176 - G 77 -8.6 -4.12037 | overlap 3439170 GATAAACAGCACAAA CTCGTGGCGAAC GAT GACCGCCACCAG GCCCAATGCTGCACC murF 3441427 - 3440036 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase murE 3442989 - 3441424 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 4464 3442053 - 3442014 - G 73 -9.4 -3.5947 | gap 1, overlap 3442001 AAGCGGCAGAGACAA CCGCTAC-CAGATTGCTGA GAT TGAACAATCCGAGCAGCGG CGAGTGGAATTCGGC TERM 4465 3442176 - 3442187 + g 72 -7.2 -4.18018 | opp_overlap 3442176 3442169 AACCAATAGCACTAA CCCC GGCC GGGG TTTTAGCTGCCAGGG TERM 4466 3442817 - 3442794 - G 78 -5.3 -4.83615 | gap 1, overlap 3442795 3442796 CAGCTTCGACAAAAA CGGCAGCAGC GCCCT GCT-CTACCG CGTTGGCGATAAATT TERM 4467 3442857 - 3442882 + g 85 -11.9 -3.6502 | opp_overlap 3442874, overlap 3442858 3442860 CGGCCCGGGTTCCCA CCAGGGCGATA AAGA TATCGCCCTGC TTTACCTGGCGACTG TERM 4468 3442858 - 3442881 + g 95 -15.4 -2.78798 | opp_overlap 3442874, overlap 3442857 3442860 GGCCCGGGTTCCCAC CAGGGCGATA AAGA TATCGCCCTG CTTTACCTGGCGACT TERM 4469 3442860 - 3442879 + g 78 -12.2 -2.94144 | opp_overlap 3442874, overlap 3442858 3442857 CCCGGGTTCCCACCA GGGCGATA AAGA TATCGCCC TGCTTTACCTGGCGA ftsI 3444821 - 3442989 - | penicillin-binding protein 3 - Pseudomonas aeruginosa CJA_2936 3445135 - 3444821 - | cell division protein FtsL mraW 3446130 - 3445201 - | S-adenosyl-methyltransferase MraW TERM 4470 3446001 - 3445984 - G 73 -9.1 -3.63694 | ATCGATTGCCAACAA CCGGCCT TCAG AGGCCAG GTGCTGCAGAATCAG mraZ 3446580 - 3446140 - | mraZ protein TERM 4471 3446827 - 3446809 - R 73 -4.6 -4.78753 | opp_overlap 3446809 GCAATAGCAACAAAA CTTAAGGT AAT ACATTAAG TTTGAAACTATTTAG CJA_2939 3448248 - 3447022 - | response regulator cheB-1 3449285 - 3448245 - | protein-glutamate methylesterase CheB TERM 4472 3448361 - 3448345 - G 72 -10.9 -2.98881 | overlap 3448340 3448338 3448347 ATACCAAATACCACA CAGGATG CTT CATCCTG GGCAATCGTACGACT CJA_2941 3449783 - 3449301 - | putative cheB, glutamate methylesterase CJA_2942 3450623 - 3449793 - | chemotaxis protein methyltransferase CheR CJA_2943 3452347 - 3450680 - | methyl-accepting chemotaxis protein CJA_2944 3452899 - 3452393 - | chemotaxis protein cheA-1 3455103 - 3452896 - | chemotaxis sensor histidine kinase CheA TERM 4473 3453744 - 3453718 - G 84 -13.8 -2.58714 | overlap 3453714 3453723 CCTTACATGAACTGA CTCAATGCCATG ATC CATGGCATTGCG CACGATATGCATCAG TERM 4474 3453739 - 3453723 - G 72 -10.9 -3.10409 | overlap 3453718 3453714 CATGAACTGACTCAA TGCCATG ATC CATGGCA TTGCGCACGATATGC TERM 4475 3454187 - 3454203 + g 86 -6.5 -5.10461 | overlap 3454183 TCCACCAGGATGGTA CCGATTC TGG GAACCGG TTTTTGTTCAATAGC CJA_2946 3455421 - 3455116 - | STAS domain protein cheY-1 3455797 - 3455432 - | chemotaxis protein CheY TERM 4476 3455542 - 3455568 + g 73 -11.6 -2.7361 | overlap 3455538 TTTTATCATCGGCAC CTTCCGTCGTCA GCA TGATGACGGGGG TAAATTTGTAATTGG CJA_2948 3457122 - 3455869 - | putative methyl-accepting chemotaxis protein CJA_2949 3457413 - 3457195 - | hypothetical protein TERM 4477 3457432 - 3457404 - G 100 -15.4 -3.61219 | ATAAAAGCGGGGAAA GCGCTGCCATGA CAAAC TCATGACAGCGC GCAGGTTGGCCGGGC TERM 4478 3457509 - 3457456 - R 75 -11.3 -3.00946 | gap 1, opp_overlap 3457471, overlap 3457471 GCCGGGCAGAAACCA TTGCCCATAAAAAAACCTGTGCCCGT TGA AAAAGCACAGGT-TTTTTATGGACGA TAAAGCGAGAGGATA TERM 4479 3457495 - 3457471 - R 91 -7.1 -5.60993 | opp_overlap 3457471, overlap 3457456 TTGCCCATAAAAAAA CCTGTGCCCGT TGA AAAAGCACAGG TTTTTTATGGACGAT TERM 4480 3457471 - 3457495 + r 79 -4.3 -5.24531 | opp_overlap 3457456 3457471 TTGCCCATAAAAAAA CCTGTGC CCGTTGAAAAA GCACAGG TTTTTTATGGACGAT ppc 3460144 - 3457529 - | phosphoenolpyruvate carboxylase TERM 4481 3457714 - 3457727 + g 70 -3.8 -4.62302 | overlap 3457722 TAGGGTCATCACTGA GCAG CACATC CTGC TTTTTCAGGGTATTG TERM 4482 3457907 - 3457896 - G 75 -7.2 -4.33851 | opp_overlap 3457895, overlap 3457884 AAACTGGAGAAGAAA GGCC AGTT GGCC ATCATCTCGTCCAGC TERM 4483 3459511 - 3459527 + g 76 -7.9 -4.18018 | opp_overlap 3459506 3459504, overlap 3459513 GGATAAAATCGGGAA CCGCCTG CCA CAGGCTG TTTTCAATAACGGCA TERM 4484 3459513 - 3459525 + g 73 -9.1 -3.69216 | opp_overlap 3459506 3459504, overlap 3459511 ATAAAATCGGGAACC GCCTG CCA CAGGC TGTTTTCAATAACGG TERM 4485 3459826 - 3459845 + g 78 -10.8 -3.42574 | TTTCTTCGGCCAGTT GCTGCAAA AGTA TTTGCAGC TTGTCATCGCCTTCG TERM 4486 3461124 - 3461114 - R 74 -6.8 -4.37067 | opp_overlap 3461113 TAAACATCACCAAAA CCCA AAG TGGG ACTTATTCAGTAAAC CJA_2951 3462710 - 3461142 - | IS66 family element, transposase TERM 4487 3461179 - 3461197 + g 72 -10.3 -3.36968 | opp_overlap 3461178 3461179 TTCCACGGTAATAAT GCCTCGA TCTGT TCGAGGC TTGTCGCATTGGGTA TERM 4488 3461714 - 3461724 + g 95 -6.8 -5.40474 | opp_overlap 3461713 3461714 CCCAACAGGCTAAAT GGGT AAT ACCC TTTTTTTCACAAGGT TERM 4489 3463060 - 3463042 - R 79 -8.8 -4.09864 | overlap 3463028 ATGGATTTGCGAAAA TCCACCGG TTG CCGGTGTA CGTATACCGGTACAT CJA_2953 3463402 - 3463088 - | IS66 family element, Orf1 protein TERM 4490 3463553 - 3463534 - R 70 -2.2 -4.94902 | GAATCATCACAAAAA GATACA GCCGGATA TGTATC AATTCTTTTCACAAA TERM 4491 3463886 - 3463876 - R 86 -4 -5.50313 | TACAAAATTAAAAAA TCAA TTT TTGA AATTTTAAACAATAG TERM 4492 3463949 - 3463926 - R 79 -3.2 -5.42862 | AGAGTGGTAAAAAAA TCCCTGTTAC ATCT ATAACAAAGA AAACAGCTTATGTGA CJA_2954 3468169 - 3463988 - | Molybdopterin oxidoreductase Fe4S4 domain family TERM 4493 3464314 - 3464304 - G 74 -2.4 -5.06414 | TCCTGGTAATAAAAA TCCG AAG CGGC GTGCTGCTCGCCAAA TERM 4494 3464527 - 3464517 - G 74 -3.2 -5.02074 | CGATCCGCCAAAAAA GTAG ATG CCAC GCCCTTGCGCATTTT CJA_2955 3470078 - 3468393 - | methyl-accepting chemotaxis protein TERM 4495 3468830 - 3468805 - G 70 -5.9 -4.15565 | overlap 3468806 GCCACCACTGCAAAA CCGCGCCCCTG CTCC CCGGCGCGCGC CGCTTCGATGGACGC TERM 4496 3469544 - 3469534 - G 79 -4.6 -4.99035 | CCATCGACATAAAAA CCGG TAC CCAG CATCAGGTTCCACTT TERM 4497 3470043 - 3470025 - G 86 -9.5 -4.35483 | CGCCAGGATAATAAA GCCGGGG ACCAA CCCCAGC AGGATAAGCTTGGCC TERM 4498 3470275 - 3470231 - H 93 -15.3 -3.08798 | overlap 3470233 3470235 AGGCGCCAGCCAAGA TATATCCATCCTGCGTATTTA GTC TCAACAGGCAGGATGGATATA GCACTACCCTGGGTG TERM 4499 3470273 - 3470233 - H 82 -13.5 -3.10344 | overlap 3470231 3470235 GCGCCAGCCAAGATA TATCCATCCTGCGTATTTA GTC TCAACAGGCAGGATGGATA TAGCACTACCCTGGG TERM 4500 3470271 - 3470235 - H 78 -11.7 -3.11072 | overlap 3470233 3470231 GCCAGCCAAGATATA TCCATCCTGCGTATTTA GTC TCAACAGGCAGGATGGA TATAGCACTACCCTG TERM 4501 3470629 - 3470606 - g 71 -9.4 -3.53012 | opp_overlap 3470605 CTGGTGCGCCTTAAA GCCCCGGCGG AAAC CCGCCTGGCC ATGTTGGAGTTGATG CJA_2956 3470411 - 3472270 + | hypothetical protein TERM 4502 3473533 - 3473515 - g 74 -7.4 -4.08945 | opp_overlap 3473493 ACGAGCGCGTTAAAA CCGTTTTC GGT GAAACCGG AGCTGACCTGGCATT TERM 4503 3474034 - 3474018 - g 72 -4.4 -4.7254 | ATGGTGGATGAAAAA GACGAA GAAAT TTCGCC CAAGCATTTCCTCGA CJA_2957 3472413 - 3474641 + | EAL domain protein TERM 4504 3474707 - 3474728 + G 74 -6.1 -4.5442 | opp_overlap 3474720, overlap 3474720 ACAACCCCATCCCTT TTATTTTTA AATA TAAAAATAA TTTTATGATTCAAAA CJA_2958 3474670 - 3474774 + | hypothetical protein TERM 4505 3474955 - 3474993 + F 93 -15.4 -3.07935 | CTCTACGGCACTATC CCCTGGCACCGGGA CCAGCAGGGTT TTCCGGTGCCAGGG TTCCATCCATCAGCT TERM 4506 3475822 - 3475799 - g 77 -8.8 -4.11751 | ATCAACGCGGTAAAA GCGGCCGGTT TTAA AACCATCCGC ATCCCCGTGTCCTGG cel5F 3475025 - 3476695 + | cellulase, putative, cel5F TERM 4507 3476751 - 3476727 - T 75 -11.4 -2.9732 | opp_overlap 3476727, overlap 3476724 GTGTAACGGAAATGA CGGGAGAGCC TGCAC GGCTCTCTCG TTTCAGGGGAATCGT TERM 4508 3476727 - 3476751 + T 93 -13.6 -3.5393 | opp_overlap 3476727 3476724 GTGTAACGGAAATGA CGGGAGAGCC TGCAC GGCTCTCTCG TTTCAGGGGAATCGT CJA_2960 3478169 - 3476778 - | ACT domain protein/phosphoserine phosphatase SerB TERM 4509 3477140 - 3477154 + g 70 -5.6 -4.37092 | opp_overlap 3477149, overlap 3477149 3477150 AATAATTAAAGCCGC CCGAGA GGA TCGCGG TTTTGTAACCGAGCT TERM 4510 3477432 - 3477448 + g 78 -10.9 -3.53091 | overlap 3477428 CAGGCGGCGGTTGCG GCGATAC ACC GTATCGC TTTGGAAGGCAACAT TERM 4511 3478652 - 3478642 - g 72 -6.8 -4.1585 | TCACAACGTGGAAAA CCAG CTA CTGG TACAAAGCGGATTCA CJA_2961 3478364 - 3479515 + | hypothetical protein TERM 4512 3480035 - 3480050 + G 75 -4.6 -4.86385 | ATATGCTCATGGCAT TCGAGC CCTT GCACGA TTTATTTTTACCGCT CJA_2962 3479677 - 3481398 + | acyltransferase family protein CJA_2963 3482274 - 3481426 - | hypothetical protein TERM 4513 3482694 - 3482706 + G 73 -9.1 -3.64703 | opp_overlap 3482683 AACAGGCCGGTATTA CCCTG ACC CAGGG TTTCGATCCGGCCCA TERM 4514 3482933 - 3482949 + G 87 -5 -5.26875 | overlap 3482934 TGGATACTCGACTAC GCCGGC ATGGC GCCGGG TTTTTTAATTGGCGG TERM 4515 3482934 - 3482948 + G 72 -8.5 -3.75402 | overlap 3482933 GGATACTCGACTACG CCGGC ATGGC GCCGG GTTTTTTAATTGGCG TERM 4516 3482999 - 3483009 + G 100 -8.2 -5.67063 | ACCTCTGCCCGCCTG GGCG AAA CGCC TTTTTTTGTGGTGGA mpl 3482552 - 3483943 + | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase TERM 4517 3484459 - 3484478 + G 74 -7.8 -4.08064 | opp_overlap 3484458 3484459, overlap 3484476 GCCCAGGTGAATAAC GGCAATGC CCTG GCACTGCC TTTTGCCAAAGGCTT rpiB2 3484141 - 3484779 + | sugar-phosphate isomerase TERM 4518 3484787 - 3484809 + F 83 -13.4 -3.27525 | overlap 3484782 GCAAGTGATCTGCCA GGCTGCCGCT CGA AACGGCAGCC TTCCCTTTCCGGGGC CJA_2966 3484993 - 3485601 + | 3-polyprenyl-4-hydroxybenzoate decarboxylase CJA_2967 3485620 - 3486528 + | hydroxymethylglutaryl-CoA lyase, (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) TERM 4519 3486619 - 3486638 + G 71 -2.1 -5.02074 | opp_overlap 3486609 3486608 GAAACGGCACAAATA CGCTG GCAAGAACTA CAGCG TTTTTTCGCCAGTGG CJA_2968 3486571 - 3486873 + | hypothetical protein CJA_2969 3486876 - 3487322 + | acetyltransferase, GNAT family CJA_2970 3487343 - 3487753 + | hypothetical protein TERM 4520 3487780 - 3487805 + T 100 -14.1 -5.34309 | gap 1, opp_overlap 3487780 ACCCACTGACAAAAA GGCCGACAACTG CAA CAGT-GTCGGCC TTTTTATTTGCTGCT TERM 4521 3487805 - 3487780 - T 100 -14.1 -4.88067 | gap 1, opp_overlap 3487780 ACCCACTGACAAAAA GGCCGACAACTG CAA CAGT-GTCGGCC TTTTTATTTGCTGCT TERM 4522 3487815 - 3487826 + T 82 -5.8 -5.22039 | TCGGCCTTTTTATTT GCTG CTCT CAGC TTTTTTGCCTTTGGC CJA_2971 3488567 - 3487851 - | Smr domain protein TERM 4523 3488523 - 3488491 - G 100 -20.8 -3.66356 | opp_overlap 3488497, overlap 3488497 AGCCGGAATTGTAAA TGAAAAGGCCGCCT ATGTA AGGCGGCCTTTTCA CAATAGCAGGGGCAA TERM 4524 3488497 - 3488517 + g 100 -14 -4.11216 | opp_overlap 3488491 3488497 AATTGTAAATGAAAA GGCCGCCT ATGTA AGGCGGCC TTTTCACAATAGCAG TERM 4525 3488517 - 3488497 - G 100 -14 -4.564 | opp_overlap 3488497, overlap 3488491 AATTGTAAATGAAAA GGCCGCCT ATGTA AGGCGGCC TTTTCACAATAGCAG acsA 3490482 - 3488545 - | acetate--CoA ligase TERM 4526 3490335 - 3490356 + g 85 -11.6 -3.61398 | GGGTCCAAGGCTGCT GCCACGTC AGGAAG GACGTGGC TTGTTCCGCCCAAAA CJA_2973 3490916 - 3490671 - | hypothetical protein TERM 4527 3490960 - 3490996 + r 100 -21.1 -3.54424 | opp_overlap 3490970, overlap 3490970 ACCGGGTATCACCAG CGATAAAAAAGGGCCGC TAC GCGACCCTTTTTTATCG TTTACCGGCATCAGG TERM 4528 3490970 - 3490986 + r 100 -9.3 -5.42265 | opp_overlap 3490970, overlap 3490960 ACCAGCGATAAAAAA GGGCCGC TAC GCGACCC TTTTTTATCGTTTAC TERM 4529 3490986 - 3490970 - R 100 -11.5 -5.28778 | opp_overlap 3490970 3490960 ACCAGCGATAAAAAA GGGCCGC TAC GCGACCC TTTTTTATCGTTTAC panD 3491387 - 3491007 - | aspartate 1-decarboxylase panC 3492271 - 3491420 - | pantoate--beta-alanine ligase CJA_2976 3492904 - 3492398 - | MOSC domain protein CJA_2977 3493066 - 3493320 + | prevent-host-death family protein CJA_2979 3493313 - 3493579 + | addiction module toxin, Txe/YoeB family dnaB 3494967 - 3493576 - | replicative DNA helicase TERM 4530 3495060 - 3495012 - R 100 -23.3 -4.07568 | opp_overlap 3495016 3495017, overlap 3495017 GTTTTGTCTGGAAAA GAAAACGGGCACTATCGCTACCC AAG GGGTGTCGATAGTGCCCGATTTC GCACAGCTTGTCAGC TERM 4531 3495016 - 3495056 + r 100 -20.5 -3.54638 | opp_overlap 3495012 3495017, overlap 3495017 TGTCTGGAAAAGAAA ACGGGCACTATCGCTACCC AAG GGGTGTCGATAGTGCCCGA TTTCGCACAGCTTGT TERM 4532 3495017 - 3495055 + r 100 -24 -2.72461 | opp_overlap 3495012 3495017, overlap 3495016 GTCTGGAAAAGAAAA CGGGCACTATCGCTACCC AAG GGGTGTCGATAGTGCCCG ATTTCGCACAGCTTG TERM 4533 3495055 - 3495017 - R 100 -21.8 -5.07652 | opp_overlap 3495017 3495016, overlap 3495012 GTCTGGAAAAGAAAA CGGGCACTATCGCTACCC AAG GGGTGTCGATAGTGCCCG ATTTCGCACAGCTTG rplI 3495551 - 3495105 - | ribosomal protein L9 rpsR 3495793 - 3495566 - | ribosomal protein S18 rpsF 3496240 - 3495797 - | 30S ribosomal protein S6 TERM 4534 3496446 - 3496469 + H 82 -6.8 -4.8622 | opp_overlap 3496452, overlap 3496452 CTGGCTTATAGGGCT CAAAATGACA GCGC TGTCTTTTTG TTTTTCATTAGCAAA TERM 4535 3496452 - 3496463 + H 89 -4.4 -5.67529 | opp_overlap 3496452, overlap 3496446 TATAGGGCTCAAAAT GACA GCGC TGTC TTTTTGTTTTTCATT TERM 4536 3496873 - 3496855 - g 75 -4.4 -4.73635 | opp_overlap 3496857, overlap 3496856 3496857 TACAAGGCAACAAAA TCCTGGCC AAC GGCCAGCC GGCCAGCTTCTCGGG TERM 4537 3496871 - 3496857 - g 73 -11.4 -2.64773 | opp_overlap 3496857, overlap 3496856 3496855 CAAGGCAACAAAATC CTGGCC AAC GGCCAG CCGGCCAGCTTCTCG TERM 4538 3498384 - 3498365 - g 71 -2.8 -4.77157 | overlap 3498368 3498370 CCAAGGCACTAAAAA CAATAGCG CCGC CGCTATCC CGACGCTAAGCGGTA TERM 4539 3498381 - 3498368 - g 77 -6.7 -4.4831 | overlap 3498365 3498370 AGGCACTAAAAACAA TAGCG CCGC CGCTA TCCCGACGCTAAGCG cel5B 3496704 - 3498416 + | endo-1,4-beta glucanase, cel5B TERM 4540 3498458 - 3498425 - f 83 -13.1 -3.23598 | opp_overlap 3498427 3498429 3498431, overlap 3498417 3498429 CAATTAACTGATCAA TCCAGAGCCGGCAGC TATA ACTGCCGGCTCTGTT CCATCACACAGTATT TERM 4541 3498427 - 3498456 + F 100 -19.4 -3.05596 | opp_overlap 3498425 3498417 3498429, overlap 3498429 3498431 ATTAACTGATCAATC CAGAGCCGGCAG CTATAA CTGCCGGCTCTG TTCCATCACACAGTA TERM 4542 3498429 - 3498454 + F 93 -16.2 -3.08679 | opp_overlap 3498425 3498417 3498429, overlap 3498427 3498431 TAACTGATCAATCCA GAGCCGGCAG CTATAA CTGCCGGCTC TGTTCCATCACACAG TERM 4543 3498454 - 3498429 - f 95 -16.9 -2.57721 | opp_overlap 3498429 3498427 3498431, overlap 3498425 3498417 TAACTGATCAATCCA GAGCCGGCAGC TATA ACTGCCGGCTC TGTTCCATCACACAG TERM 4544 3498431 - 3498452 + F 82 -13 -3.10344 | opp_overlap 3498429 3498425 3498417, overlap 3498429 3498427 ACTGATCAATCCAGA GCCGGCAG CTATAA CTGCCGGC TCTGTTCCATCACAC glu16D 3498699 - 3501836 + | beta glucanase, putative, glu16D TERM 4545 3501901 - 3501940 + F 84 -8.6 -4.56597 | gap 2, overlap 3501902 TATCGGTCGATACCT TCACCCGG--CTCCTGCC TCCCTC GGCAGGGGTACCGGGTGC TTTTTACACCCACAG TERM 4546 3501902 - 3501939 + F 82 -12.1 -3.33744 | gap 2, overlap 3501901 ATCGGTCGATACCTT CACCCGG--CTCCTGCC TCCCTC GGCAGGGGTACCGGGTG CTTTTTACACCCACA TERM 4547 3502458 - 3502448 - g 72 -6.8 -4.25848 | overlap 3502449 AAGCGCGCATCAAAA TGCC GCC GGCA CGCAACGGCGAATTC TERM 4548 3502657 - 3502643 - g 85 -11.4 -3.57792 | CCACCTACGCGCAAA TGGGGC TCA GCCCCA GCGACCAATACATTA TERM 4549 3502896 - 3502883 - g 75 -5.2 -4.63486 | ATGTGGCCAATAAAA CCGG CTATAC CCGG GTGACCACTGGCGTG TERM 4550 3503194 - 3503184 - g 70 -4.6 -4.58283 | opp_overlap 3503184, overlap 3503172 TAACGGCTTCAAAAA CGCC GCC GACG GTTATGTAGGCTCCA gly16A 3501997 - 3505581 + | glycoside hydrolase, putative, gly16A TERM 4551 3505612 - 3505634 + F 100 -13.4 -5.47399 | ATTCGGTCATACCGC CGCCCGCGAT TTT ATAGCGGGCG TTTTTTTGCAATTAC CJA_2986 3505669 - 3506301 + | PEP-CTERM putative exosortase interaction domain protein TERM 4552 3506384 - 3506361 - T 85 -12.4 -3.35996 | opp_overlap 3506362, overlap 3506362 TAGTTCTACTCATAA GGCGAGCCTC ATTT GAGGCTCGCT TTTTTTATGATTCGG TERM 4553 3506383 - 3506362 - T 90 -15.9 -2.61383 | opp_overlap 3506362, overlap 3506361 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG TERM 4554 3506362 - 3506383 + T 100 -15.9 -5.71983 | opp_overlap 3506361 3506362 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG CJA_2987 3507506 - 3506355 - | ISCja2, transposase TERM 4555 3507604 - 3507621 + r 85 -6.9 -4.93696 | opp_overlap 3507604, overlap 3507607 AACTATGGGACAGCA GTGCCGC TAAT GCGGTGC TTTTTCGTATTTCCC CJA_2988 3508681 - 3507653 - | hypothetical protein TERM 4556 3508210 - 3508194 - G 78 -7.9 -4.32669 | overlap 3508195 AATTTCACAAAATAA CCACCGC AGA GCGGTGC AGCGCATTTACGATA TERM 4557 3508209 - 3508195 - G 77 -11.4 -3.18517 | overlap 3508194 ATTTCACAAAATAAC CACCGC AGA GCGGTG CAGCGCATTTACGAT CJA_2989 3509103 - 3509654 + | hypothetical protein TERM 4558 3509966 - 3509954 - g 82 -9.1 -4.25056 | TATTGCACGAAGAAA GCCAG CGC CTGGC CGGTTCCGATGGATG CJA_2990 3509671 - 3510201 + | putative lipoprotein TERM 4559 3510248 - 3510208 - T 90 -13.6 -3.39449 | gap 1, opp_overlap 3510222, overlap 3510211 3510222 CTGCACTAACACGAA CCAGCATAAAAAAATCCCC GCTT GGGGATTTTTTTATGC-GC CAGCCGTGCAACATT TERM 4560 3510246 - 3510211 - T 100 -20.8 -2.85437 | opp_overlap 3510222, overlap 3510208 3510222 CACTAACACGAACCA GCATAAAAAAATCCCC GCTT GGGGATTTTTTTATGC GCCAGCCGTGCAACA TERM 4561 3510235 - 3510222 - T 100 -8.1 -5.67967 | opp_overlap 3510222, overlap 3510211 3510208 ACCAGCATAAAAAAA TCCCC GCTT GGGGA TTTTTTTATGCGCCA TERM 4562 3510222 - 3510235 + T 100 -8.1 -5.60993 | opp_overlap 3510211 3510208 3510222 ACCAGCATAAAAAAA TCCCC GCTT GGGGA TTTTTTTATGCGCCA CJA_2991 3511433 - 3510282 - | putative DNA binding protein TERM 4563 3510507 - 3510496 - G 91 -3 -5.59564 | opp_overlap 3510496 ATAAATTCAAAAAAA TTAC TCTG GTAA TGTATTTTTAAAATT TERM 4564 3510736 - 3510722 - G 83 -5.8 -5.01811 | TGATCAAACCAAAAA TAAACA GTG TGTTTA CCAAAATGGCGGTGA CJA_2992 3511655 - 3511473 - | hypothetical protein TERM 4565 3511782 - 3511810 + r 78 -11.8 -3.07816 | opp_overlap 3511779 3511788, overlap 3511784 3511788 GTGCCAAAACAAGTG TAGAAACCGGAG TATTC CCCCGGTTTCTA TTGGATCAATCAGGG TERM 4566 3511784 - 3511808 + r 70 -10 -3.09878 | opp_overlap 3511779 3511788, overlap 3511782 3511788 GCCAAAACAAGTGTA GAAACCGGAG TATTC CCCCGGTTTC TATTGGATCAATCAG chi18C 3513433 - 3511820 - | endo-chitinase, putative, chi18C TERM 4567 3513065 - 3513053 - G 72 -10.5 -3.00525 | opp_overlap 3513049, overlap 3513048 TTGTCCCAAACTATA GGCGG TAC CCGCC ACATATTGGGGGGAA TERM 4568 3513418 - 3513393 - G 72 -6.1 -4.30719 | gap 1 TTGGTTGATAACAAA CTTACCCCGAGC AGC GC-CAGGGTTAG AAACGACGCCTTCAT CJA_2994 3514557 - 3513808 - | RNA methyltransferase, TrmH family, group 3 TERM 4569 3514148 - 3514110 - G 77 -11.7 -3.15197 | gap 1, overlap 3514102 GAATAAAGGGCAACA CCTCGGCCGCGCCACAAG CTAC CTTGC-GCGCAACCGGGG TCAGGCCGGCAGATT TERM 4570 3514536 - 3514515 - G 72 -10.9 -3.01712 | gap 1, overlap 3514482 GCGCGCTTTTTAACA GCGCCTGCAC CGC GTGCAGGC-C ATATACCAGTTCGTA CJA_2995 3517606 - 3514706 - | putative ribonuclease R TERM 4571 3514980 - 3514990 + g 71 -2.4 -5.00616 | overlap 3514966 3514965 TTGCCGGAGGCTTTA CCAG CGG CAGG TTTTTTGACAGCGGA TERM 4572 3515036 - 3515048 + g 84 -7.7 -4.60487 | opp_overlap 3515035 CGCTTTAGTAACGAC GGCAT TGG ATGCC TTTTTAGCCGTGGTC TERM 4573 3515138 - 3515152 + g 100 -4.2 -5.75538 | TTTTTTCACCGCTGC CTTGGC CTG GTCAGG TTTTTGTTTTTTCGC TERM 4574 3515382 - 3515397 + g 70 -6.2 -4.21936 | ACGGCCATACTGGAC TCGATT TCAA AATCGA TTTTGCGATTATCGA TERM 4575 3515503 - 3515485 - G 70 -11 -2.70932 | overlap 3515487 TGCGCTCGCCAACGA GACGCTGC TGG GCAGCATC AAAACGGTAGTAATC TERM 4576 3515905 - 3515924 + g 78 -8.6 -4.24948 | gap 1, opp_overlap 3515908 TATAGGCATCGTAAC CCA-GGCCA AAA TGGCCATGG TTTTCCATCTGGTAC TERM 4577 3517687 - 3517677 - R 84 -8.2 -4.63218 | CTGGCCCGAATAAAA CCGG CGC CCGG AAATAAAGGCAATAC TERM 4578 3517943 - 3517964 + r 100 -15.9 -4.76802 | opp_overlap 3517943 GCACCATACATAAAA GCCCCGATC GAAA GATCGGGGC TTTGTTGTTTTTACC TERM 4579 3517964 - 3517943 - R 100 -15.9 -4.62984 | opp_overlap 3517943 GCACCATACATAAAA GCCCCGATC GAAA GATCGGGGC TTTGTTGTTTTTACC pchC 3518850 - 3518071 - | pyochelin biosynthetic protein PchC pksE 3521226 - 3518881 - | involved in polyketide synthesis TERM 4580 3520814 - 3520788 - G 72 -7.4 -3.94877 | gap 1, opp_overlap 3520806 AGTTGGCAATAACAA TGTCTCGCAGA TCCAAC TCTGCGAG-CA ACGCTTGCAGTTGCT TERM 4581 3520806 - 3520824 + g 74 -11 -3.21218 | opp_overlap 3520788 CTCGCAGATCCAACT CTGCGAGC AAC GCTTGCAG TTGCTCCTCACGAGT halA 3523000 - 3521243 - | halogenase A TERM 4582 3522653 - 3522639 - G 77 -7.2 -4.49556 | TCCTGACGAAACAAA TGGTTT TCC AAACCA TGCAAATGCGGAGGG CJA_3000 3528740 - 3523065 - | MmpIV TERM 4583 3524772 - 3524782 + g 70 -6.8 -4.07687 | CAGATTTTCGATATC CAGC AAC GCTG TTTTCAGAAACGGAT TERM 4584 3525026 - 3525004 - G 77 -2.7 -5.07107 | gap 1, overlap 3525006 TAAAGTGCTAAAAAA CTTGCC-ATG TTTT CATTGGCACG AACAGCAATCGAATT CJA_3001 3542806 - 3528737 - | Beta-ketoacyl synthase, N-terminal domain protein TERM 4585 3531296 - 3531308 + g 71 -9.1 -3.51411 | overlap 3531298 3531299 CAACTCATGCCATTG CGCCA ACG TGGCG TTGATTTGAGCGGAT TERM 4586 3532266 - 3532218 - G 83 -5.2 -5.09245 | opp_overlap 3532221, overlap 3532209 3532210 CTAAAAGGATAAAAA CCCCGCTTATCCAGGTTTTCCA TCTCG CAGAAAACCAGCGCAAGCGTGG ATTGGAACGCGGCAT TERM 4587 3532768 - 3532738 - G 75 -5.3 -4.72272 | overlap 3532740 CGGCGGCAGGAAAAA TCGACTGTCCACC GACCT GGTGGTCTGCCAA TATCCAAGCGCGGCT TERM 4588 3533019 - 3533032 + g 72 -8.1 -3.99592 | overlap 3533018 TGCGCCATGGACTTG CAGGC TGTT GCCTG TTTATCGTCCTCACT TERM 4589 3534089 - 3534067 - G 81 -13.4 -2.70932 | opp_overlap 3534060, overlap 3534069 GGGCTTGGCTAATCA CAGCCTGCTG GGC CAGCGGGCTG GGTACGGTATATCCG TERM 4590 3535196 - 3535207 + g 74 -5.8 -4.56775 | GTGTTCCCAGTTGGC CTGG ATAT CCAG TTTTTCGGGCGCGAT TERM 4591 3535967 - 3535946 - G 74 -8.7 -3.92324 | TTGGTGAATATTAAA GGCAACATC ACCC GATGTAGCC TCCAGCGCAAGTGCA TERM 4592 3541726 - 3541709 - G 72 -7.7 -3.89822 | gap 1, overlap 3541712 CACCGAGCCCAGAAA CAGC-GGG TTC CCCGGCTG GCGGCTGGCACCGTA CJA_3002 3547968 - 3542803 - | oxidoreductase, zinc-binding dehydrogenase family TERM 4593 3543130 - 3543109 - G 77 -2.9 -5.0538 | overlap 3543089 3543110 GCCCAGGTCAAAAAA TCCGGTC CTGGTATC GACCGGT GTACCCGGTGCCATG TERM 4594 3543188 - 3543176 - G 72 -7.7 -3.86194 | AACTGTGCCCACAAA TGCTG TTG CAGCA CCCGGTTGCGGCTCG TERM 4595 3543893 - 3543875 - G 72 -11 -3.04263 | opp_overlap 3543857, overlap 3543888 ACTGCATCGGCAACA TCCGCCAC ATA ATGGCGGA CATCTGCCGGTTCAG TERM 4596 3547541 - 3547508 - G 71 -11 -2.87211 | gap 1 ACCCCGTTGTACACA CCGA-CCCGCTGGCC ACGCA GGCCAGCGGGATCAC GCCCGGCATTTTCCA TERM 4597 3547826 - 3547795 - G 80 -11.6 -3.28924 | overlap 3547825 CAGGGTGCTCCAGAA GCTTTCCGGGGAGT TGAT ACTGCCGGGAAAGC GGCAACCGATACCAA CJA_3003 3554392 - 3547961 - | EpoC TERM 4598 3549225 - 3549205 - G 70 -6.8 -4.07687 | overlap 3549215 ATGCGTTGCGCAAAA CCCTAGCG AATTG CGCTATGG AAGCATCCAGAATCG CJA_3004 3558649 - 3554519 - | putative BarE protein TERM 4599 3554632 - 3554648 + g 72 -10.1 -3.36569 | opp_overlap 3554626 3554645, overlap 3554630 CCAGATAACGTGCAG CCTCTGC AAT GCAGGGG TATTTAAAAAATTCC TERM 4600 3555157 - 3555167 + g 71 -3.2 -4.82901 | opp_overlap 3555143, overlap 3555140 3555139 ACGCCAAAAACCCTT TGGC GTC GCTA TTTTTGTAGCCCCGA TERM 4601 3556262 - 3556250 - G 71 -2.7 -4.73682 | TGGCACAATACAAAA CACAT TGG ATGTA CCAGCTGCCTGCAAT TERM 4602 3558469 - 3558451 - G 75 -5.3 -4.7173 | CAGTACACTGAAAAA TATCCGG CACTT CCAGATA AGCCTGAATTTTGGC TERM 4603 3559494 - 3559478 - R 77 -9.4 -3.91897 | TCTGGTAGTGACAAA GCACCC TGCGC GGGTGC TGATCGCCATGGCCT CJA_3005 3560704 - 3559508 - | hypothetical protein CJA_3006 3561051 - 3560704 - | hypothetical protein TERM 4604 3560972 - 3560986 + g 75 -4.9 -4.84017 | opp_overlap 3560972 CCCACTTCATCAAAA CCGGC ATCGC GCTGG TTTTTATCCCAGATT gly43H 3562816 - 3561161 - | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43H TERM 4605 3561401 - 3561413 + g 77 -3.3 -5.03314 | overlap 3561402 GTTCGTCAGGCGAAT GCGCA GGT TGCGG TTTTTTAAAGGTACG xyl39A 3564450 - 3562885 - | beta-xylosidase, putative, xyl39A TERM 4606 3563458 - 3563478 + g 90 -8.1 -4.77757 | overlap 3563460 CCAATAGGACATCGA CTGGACGGC ATC GCCGACCTG TTTTAATTTTTGCAG TERM 4607 3563460 - 3563476 + g 78 -9.3 -3.99386 | overlap 3563458 AATAGGACATCGACT GGACGGC ATC GCCGACC TGTTTTAATTTTTGC CJA_3009 3564890 - 3564474 - | hypothetical protein cel5D 3566297 - 3564891 - | cellulase, putative, cel5D CJA_3011 3567615 - 3566443 - | transcriptional regulator, AraC family domain protein TERM 4608 3566505 - 3566542 + g 73 -3.5 -4.82901 | gap 1, opp_overlap 3566504 3566505, overlap 3566495 TCTTGGGGGTACAAC CGTACTCCTCCTTGAACA GTT TGTTGAAGTAGGAA-ACG TTTTTGTACCCCACC TERM 4609 3567942 - 3567910 - R 93 -10.6 -4.56597 | gap 1, opp_overlap 3567916, overlap 3567916 TTCCTCCCTTAAAAA GCACAAGGCCCGCTG TTTC CAGCAGGCCT-GTTC GAATGGACTCAGGAA TERM 4610 3567937 - 3567916 - R 100 -13.7 -3.75505 | opp_overlap 3567916, overlap 3567910 CCTTAAAAAGCACAA GGCCCGCTG TTTC CAGCAGGCC TGTTCGAATGGACTC TERM 4611 3567916 - 3567937 + r 75 -11.5 -3.06162 | opp_overlap 3567916 3567910 CCTTAAAAAGCACAA GGCCCGCTG TTTC CAGCAGGCC TGTTCGAATGGACTC abf43K 3568931 - 3567963 - | alpha-L-arabinfuranosidase, putative, abf43K CJA_3013 3570296 - 3568956 - | YicJ-like protein TERM 4612 3569170 - 3569158 - G 93 -10.5 -4.37092 | opp_overlap 3569166 AGGCCGGTGACAAAA CCGGC CAG GCCGG CACCGGCTTTTTGGC TERM 4613 3569166 - 3569177 + g 77 -7.2 -4.56597 | opp_overlap 3569158 GACAAAACCGGCCAG GCCG GCAC CGGC TTTTTGGCAGAAAGA TERM 4614 3569715 - 3569703 - G 88 -2.6 -5.49579 | CGAGAAAAAACAAAA GAGC AAAAG GCCC ACACCCACCAGCGAC TERM 4615 3570243 - 3570213 - G 74 -3.4 -4.93877 | gap 1, overlap 3570215 CTGCATGAAATAAAA CATGGCAG-CAAT CATGAC ATTGACCGCCATA TCGCCCGCACCGAAT TERM 4616 3570329 - 3570346 + r 88 -7.7 -5.00884 | gap 1, opp_overlap 3570329 TCTTGGTTAAAAAAA GCGGCCTG TCA CAG-CCGC TTTTTTAAGGAGCCT TERM 4617 3570346 - 3570329 - R 95 -7.7 -5.40072 | gap 1, opp_overlap 3570329 TCTTGGTTAAAAAAA GCGGCCTG TCA CAG-CCGC TTTTTTAAGGAGCCT CJA_3014 3571036 - 3570437 - | hypothetical protein TERM 4618 3570728 - 3570767 + g 71 -9.3 -3.53444 | gap 1 TGCCATCGGTTTTTG GCC-ATGGTAGTGGCGGG CAATA TCCGCCAATGCCGTAGGC TTTACAAACCGGTGC CJA_3015 3572590 - 3571088 - | L-arabinose isomerase CJA_3016 3573307 - 3572609 - | putative L-ribulose-5-phosphate 4-epimerase TERM 4619 3572668 - 3572697 + g 70 -5.7 -4.40181 | gap 1, opp_overlap 3572675, overlap 3572684 GCAAATAATGTTTAT CGACAATGCC-CTG TTT CAGCGGCGCTGTTG TTTGTTGTAATGTTT TERM 4620 3572684 - 3572694 + g 72 -6.8 -4.29119 | opp_overlap 3572675, overlap 3572668 GACAATGCCCTGTTT CAGC GGC GCTG TTGTTTGTTGTAATG araB 3574974 - 3573304 - | L-ribulokinase TERM 4621 3573473 - 3573458 - G 75 -11.8 -2.98942 | ACTGTGGGATAGACA CCGCCG CACA CGGCGG CAAAAATCGCTGCAC TERM 4622 3574013 - 3573997 - G 70 -6.5 -4.1822 | TTCCAGGCCAACAAA GCCCGGT GTC ACCGAAC CATCCACCTGGCCGC gly43N 3576092 - 3575088 - | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N TERM 4623 3576495 - 3576478 - g 72 -6.9 -4.20106 | AAAGCCTATTCAAAA CCCTGGC CCTC GCCACGG CCATTGGCCTGAGTG TERM 4624 3576562 - 3576575 + G 74 -8.1 -4.1196 | TAGGATCAGAATCGG GCTGG CGTA CCAGC TTTTCAGAGTCGGTT CJA_3019 3576459 - 3577403 + | ABC transporter periplasmic binding protein TERM 4625 3577406 - 3577463 + F 100 -17.3 -2.58249 | gap 1, opp_overlap 3577389 3577388 3577424, overlap 3577406 AGCCAGTAAGTAGCT CGTGT-GGATGTTGAGCAATCGGTGTGT GTG ACACGCTGATTGCTCAACATCCTGAAAG ATTGTGCCAAATATC TERM 4626 3577406 - 3577464 + F 79 -11.3 -3.30771 | gap 2, opp_overlap 3577389 3577388 3577424, overlap 3577406 AGCCAGTAAGTAGCT -CGTGT-GGATGTTGAGCAATCGGTGTGT GTG ACACGCTGATTGCTCAACATCCTGAAAGA TTGTGCCAAATATCC TERM 4627 3577623 - 3577585 - g 74 -7.4 -4.09685 | overlap 3577618 3577620 GTCCACGCCTTAAAA GGTGTGGACTTCACCC TGCGCGC GGGCGAAATACACGCC CTGCTCGGCGAAAAC CJA_3020 3577516 - 3579012 + | sugar ABC transporter ATP-binding protein CJA_3021 3579027 - 3580043 + | sugar ABC transporter permease protein CJA_3022 3580036 - 3580992 + | putative ABC transporter permease protein TERM 4628 3581001 - 3581018 + F 93 -14.1 -3.48395 | opp_overlap 3580987 CCCTTAACGCCTCCA GGGCGGC ATTC GCCGCCC TTCTATCGCCAAAGT TERM 4629 3581068 - 3581096 + F 71 -10.4 -2.62263 | CTTGACGATTCAGTT TTGTACCCCTGT AAATG ACAGGGGTAGAA TCCTGTAAGACCACT TERM 4630 3581795 - 3581785 - g 71 -3.2 -4.78077 | GGGAATGAAAATAAA GGTC AAC AACC TTGCGTTGGTCCCCA CJA_3023 3581135 - 3582040 + | hypothetical protein CJA_3024 3582218 - 3583462 + | RNA polymerase sigma factor, sigma-70 family CJA_3025 3583811 - 3583464 - | hypothetical protein TERM 4631 3583861 - 3583848 - H 100 -3.9 -5.82316 | ATGATTTAAAAAAAA TGAAA AAAA TTTCA CCGCTATTGTCGAAT TERM 4632 3584146 - 3584132 - g 82 -2.7 -5.27779 | overlap 3584133 3584142 CTGAATACCAAAAAA TGGCC GACAA GGCCG GGGCGGTCTGGAAAG CJA_3026 3584065 - 3584427 + | hypothetical protein TERM 4633 3584768 - 3584758 - g 90 -4.6 -5.40474 | ACCCTGGTAAAAAAA GCCC TTG AGGC CGGTGGCGGTAACCC CJA_3027 3584479 - 3584889 + | hypothetical protein CJA_3028 3584921 - 3585307 + | DGPF domain superfamily CJA_3029 3585279 - 3585797 + | transcriptional regulatory protein TERM 4634 3585812 - 3585831 + T 89 -9.2 -4.56597 | opp_overlap 3585813, overlap 3585813 AGCCATAAACAAAAA AGCGCTCC ATCC GGAGCGCC TTTTTACAACGGACA TERM 4635 3585830 - 3585813 - T 100 -12.7 -5.72622 | opp_overlap 3585813 3585812 GCCATAAACAAAAAA GCGCTCC ATCC GGAGCGC CTTTTTACAACGGAC TERM 4636 3585813 - 3585830 + T 85 -12.7 -3.33744 | opp_overlap 3585813, overlap 3585812 GCCATAAACAAAAAA GCGCTCC ATCC GGAGCGC CTTTTTACAACGGAC CJA_3030 3588063 - 3585856 - | hypothetical protein TERM 4637 3586625 - 3586638 + g 85 -3.1 -5.34555 | opp_overlap 3586626, overlap 3586626 AACAGATCATCAATA TTCAG CTCA CTGGA TTTTTTATCCTGTGG TERM 4638 3587465 - 3587489 + g 77 -7.2 -4.45399 | overlap 3587466 3587484 TTACCGGAGCCCCCG GCATGGACTT CGGAC AAGTCCATGA TTTTCATCTTGGTGT TERM 4639 3587466 - 3587488 + g 74 -10.7 -3.26155 | overlap 3587465 3587484 TACCGGAGCCCCCGG CATGGACTT CGGAC AAGTCCATG ATTTTCATCTTGGTG TERM 4640 3587625 - 3587608 - G 75 -4.7 -4.8622 | CGGCTCAATCAAAAA CACCGGC TTGA GCTGGCG ACCACTTTTGATATT CJA_3031 3590429 - 3588189 - | cell wall degradation protein TERM 4641 3589791 - 3589773 - G 71 -3 -4.77438 | overlap 3589774 3589775 ACCCACCAGGAAAAA TCCCTGCT GCA AGCGGGTA AGCTGGTAATCCTCA CJA_3032 3590466 - 3591233 + | hypothetical protein TERM 4642 3591476 - 3591503 + T 100 -14.3 -4.17789 | opp_overlap 3591476, overlap 3591480 GTTCAGCATAAAAAA TAAAGGCGCAC TCAAAC GTGCGCCTTTA TTTGCTTTATCGTTG TERM 4643 3591503 - 3591476 - T 100 -14.3 -5.31275 | opp_overlap 3591476 3591480 GTTCAGCATAAAAAA TAAAGGCGCAC TCAAAC GTGCGCCTTTA TTTGCTTTATCGTTG TERM 4644 3591480 - 3591499 + T 93 -10.7 -4.65182 | opp_overlap 3591476, overlap 3591476 AGCATAAAAAATAAA GGCGCAC TCAAAC GTGCGCC TTTATTTGCTTTATC CJA_3033 3593059 - 3591530 - | Peptidase family S41B family TERM 4645 3591592 - 3591604 + g 71 -3.3 -4.74103 | opp_overlap 3591592 CACCATCGTCCACAA CAGTC CCT GACGG TTTTTGGCTTCCCGA TERM 4646 3591816 - 3591774 - G 86 -7 -5.02074 | opp_overlap 3591787, overlap 3591775 3591776 GCACTGGGGAAAAAA CCCTCGGTGTAATCACCAAA ATT CTTGGCGTTTACACCACGAA ACTGTACCGAAAAAT TERM 4647 3592328 - 3592341 + g 75 -4.5 -4.74706 | ACCCACTTTACCTGT CTCTG TGTC CAGGG TTTTTACCTGTTGCA TERM 4648 3592406 - 3592418 + g 72 -6.9 -4.2349 | AATACTGACGGATTG GCTGG CCC CCGGC TTTTGAATATCAAAG TERM 4649 3593326 - 3593272 - RH 83 -9.4 -4.32583 | gap 3, opp_overlap 3593289, overlap 3593273 3593275 CGAACATCAAAATAA CGA-GGCTTGCTGAC-GGAG-CTCAGC CGAA GCTGAGACTCCTGTCAGCCCACCACCG ATCCCGTAAACGGCT TERM 4650 3593324 - 3593273 - RH 77 -10.9 -3.18465 | gap 2, opp_overlap 3593289, overlap 3593272 3593275 GAACATCAAAATAAC GAGGCTTGCTGAC-GGAG-CTCAGC CGAA GCTGAGACTCCTGTCAGCCCACCAC CGATCCCGTAAACGG TERM 4651 3593322 - 3593275 - RH 79 -12.1 -3.13368 | gap 2, opp_overlap 3593289, overlap 3593273 3593272 ACATCAAAATAACGA GGCTTGCTGAC-GGAG-CTCAGC CGAA GCTGAGACTCCTGTCAGCCCACC ACCGATCCCGTAAAC TERM 4652 3593818 - 3593781 - RH 77 -9.4 -3.95435 | opp_overlap 3593788 TTTTTTAAAAGACAA GATAATATTTCAGTAG CATCTT CAACTGAAATATTACC CTCAAGCAAGCCCAG TERM 4653 3594437 - 3594425 - RH 70 -9.1 -3.36515 | overlap 3594423 GTGTATTCTGAAACA GCACC TAT GGTGC AGGCATCAATCCCGT CJA_3034 3603770 - 3594429 - | hypothetical protein CJA_3035 3594517 - 3594630 + | hypothetical protein TERM 4654 3594823 - 3594846 + gF 74 -10.4 -3.12482 | overlap 3594822 GTAGATACACTGACG CGTAAAACCG GTGG TGGTTTTACG TCTTGCATCATCTTC TERM 4655 3595585 - 3595595 + gF 79 -4 -5.14563 | opp_overlap 3595570 TTTACAAGTGCCTCG GAAA GAT TTTC TTTTTTAATAAAGCC TERM 4656 3596085 - 3596100 + gF 72 -2.6 -5.02074 | ATGCCTGAATATCGC TGAATC TGGG GATTTA TTTTTTAACGCCTCC TERM 4657 3596972 - 3596984 + gF 78 -5.5 -4.82667 | TTTGCGCTAATTGAC GTTGC AGC GCAGC TTTTTCCTGTGGTGA TERM 4658 3598307 - 3598319 + gF 74 -3.3 -5.0133 | TCTCACCTAATTCAC GCAGA AAT TCGGC TTTTTTACCCAGGTC TERM 4659 3599873 - 3599887 + gF 75 -10 -3.5393 | CATTGCGCAAGCCCA GCATGG CCT CCATGC TTTCACCGCCGTGCT TERM 4660 3603256 - 3603271 + gF 75 -6.1 -4.49364 | overlap 3603267 TCTGTATCTGTACCA GCCTC TTCCGC GAGGC TTTCTTCTTCACTTT CJA_3037 3603508 - 3603702 + | hypothetical protein CJA_3036 3604636 - 3603692 - | hypothetical protein CJA_3038 3606701 - 3604695 - | putative AAA family ATPase TERM 4661 3605340 - 3605327 - G 71 -9.5 -3.5511 | overlap 3605325 TTTCACCGACAAAGA GGGCG CGCA CGCCC GGATTAGGGGTAACG CJA_3039 3608449 - 3606698 - | hypothetical protein TERM 4662 3606914 - 3606891 - G 77 -3 -5.03314 | gap 1 GGCACCTGTAAAAAA GCTGAGCCCTG CAC CAGGGA-CTGC CATAAGGCTTGTGCA TERM 4663 3608103 - 3608055 - G 72 -6.5 -4.38927 | TGCTCACACAACAAA CGCGCTACGCCCTCCTGGCGAGA ATA TTTCAGCAGGTGCGCCCAACGCG ACCAGTACCAATACG TERM 4664 3608183 - 3608172 - G 72 -5.8 -4.31379 | AGTAATTCAGGAAAA CTGG CAAA CCAG ATAACATTGGCGCTA TERM 4665 3608429 - 3608371 - G 73 -11.7 -2.62613 | gap 1, opp_overlap 3608372 GGGTAGTTGAAAGAT CGCGCACCCATTGCTCGCTGGTGCGC TTGTCACC GCGCACCTGCAGGCGATGGAT-CGCA ATATCATCAGGGGCG TERM 4666 3608468 - 3608483 + r 72 -6.2 -4.32402 | GCAGTGTTCCCTACT TCAACA CGTG TGTTGA TTGTTTTAATTGCGC CJA_3040 3612464 - 3608463 - | hypothetical protein TERM 4667 3609044 - 3609060 + g 73 -9.4 -3.61806 | opp_overlap 3609044, overlap 3609040 CCAGCATGCACCACA CCGCCT GTTCA AGGCGG TTGTGTAATTGCTGT TERM 4668 3609556 - 3609517 - G 78 -8.6 -4.20074 | gap 1, opp_overlap 3609528 3609529 AAATACAGTTTAAAA TCCTGCAAATCGCCCCAGG CGG CCATGGG-GATTTCCAGGA CAGTCTCAAAGAAAT TERM 4669 3610919 - 3610897 - G 81 -9.1 -4.08853 | opp_overlap 3610904 3610906 TGCAACAGTAAATAA TCGCGCGTG CGCTC CAGGCGCGA ACGCTGGATGCGAAT TERM 4670 3611104 - 3611088 - G 70 -7.2 -4.12188 | overlap 3611089 CCAGGAGGCGTAAAA CGCCGG TTCGG CCGGCA CCCCCTGGTCATAGG CJA_3041 3614276 - 3612555 - | hypothetical protein TERM 4671 3613033 - 3613057 + g 100 -18.6 -2.78935 | CTGCTCAGGCGCGTC TCCGCCGCCC GCAAA GGGCGGCGGA TGTAATGCAGGGTCT TERM 4672 3613738 - 3613789 + g 72 -10.6 -3.06183 | overlap 3613747 GCAATTTCACTCTGT TGGCCGTAGGGTTGCGGCAGGCGC ACCA GGGCCAGGCGCACACCTTCGGTCA TTACATCGAACTCGA CJA_3042 3615241 - 3614315 - | hypothetical protein CJA_3043 3617756 - 3615270 - | hypothetical protein TERM 4673 3615922 - 3615908 - G 73 -11.4 -2.70932 | GGCCGCTTTCAAGCA GCCAGC GGC GCTGGC GCGCTTCCGGCCAGA TERM 4674 3616333 - 3616321 - G 91 -10.5 -4.15222 | AGGGTTTCGAACAAA CCGGC CTC GCCGG GTATGGCATCGACCA TERM 4675 3617615 - 3617631 + g 74 -7.9 -4.07885 | CTTTGGTGGGATTGG CCAGGCG CAG CTCCTGG TTTTGCGCCAGGGTG CJA_3044 3619931 - 3617769 - | hypothetical protein TERM 4676 3618055 - 3618093 + g 70 -10.9 -2.78216 | gap 1, overlap 3618052 TGCCCCAATGGCCAG CC-CTGGCCCTGGGTACC GCCA GGGGCCAGGGGCCAGAGG TAATTGATCAGGGTG TERM 4677 3618265 - 3618281 + g 71 -10.8 -2.89564 | ACATCCTTGAGCAGG CCGCGG GTGGG CCGCGG TGTCTGCCCTAACGC TERM 4678 3618756 - 3618737 - G 100 -10.7 -4.62783 | CATCGACTTTAAAAA CCTGGGC CTCACT GCCCAGG TCCACCAGGAAGTCC TERM 4679 3619133 - 3619089 - G 70 -9.9 -3.1634 | overlap 3619092 TCCCAAAGGATCCAA CAATTGCGCGTTGCGCGGCAG GCG CAGGCGCACCACACCCAATTG GCGACCACCGCGGGT CJA_3045 3620363 - 3619959 - | hypothetical protein CJA_3046 3622078 - 3620369 - | hypothetical protein TERM 4680 3621484 - 3621462 - G 73 -12 -2.80816 | overlap 3621464 GGTTGACGCACCACA TAGCTGCCCC CCA GGGGCAGGTA ACCATAGAGGATGGT CJA_3047 3622737 - 3622078 - | hypothetical protein CJA_3048 3623771 - 3622725 - | hypothetical protein TERM 4681 3622870 - 3622853 - G 84 -7.7 -4.63218 | gap 1, overlap 3622854 CCCCCTGCAATAAAA TGTCGCGC CCG GCGCG-CA ACCCCGCCTCGCCCT CJA_3049 3623948 - 3623781 - | hypothetical protein CJA_3050 3625036 - 3623969 - | hypothetical protein TERM 4682 3624589 - 3624611 + g 80 -5.4 -4.90525 | overlap 3624590 3624591 GGTGAGGCGCGTCAC TGCCACGCCC CAG GCGCGGGGTA TTTTGTTTGGCCTTC TERM 4683 3624741 - 3624717 - G 84 -3.5 -5.24129 | overlap 3624718 3624719 TCCCTGGAGAAAAAA TCGAGTGTCTC GTC GAAACTCTCCA TAATTCCCACAAACT CJA_3051 3625610 - 3625140 - | conserved hypothetical phage tail region protein subfamily TERM 4684 3625370 - 3625338 - G 72 -10.7 -3.05596 | gap 1 GATCGTGCCATGCAA GCGGTAAC-CGTAG CTTTGC CCACGCGTTACCGC ATCAAACCAGGCCCA CJA_3052 3627168 - 3625603 - | hypothetical protein CJA_3053 3627668 - 3627207 - | conserved hypothetical phage tail region protein subfamily CJA_3054 3629295 - 3627712 - | Phage tail sheath protein CJA_3055 3630153 - 3629338 - | hypothetical protein TERM 4685 3629686 - 3629667 - G 75 -11.4 -3.04144 | CCTCCAGTTCTAACA GGCCCCAT AGCA ACGGGGCC AGTGAAGAGGCCATG CJA_3056 3630817 - 3630203 - | hypothetical protein TERM 4686 3630786 - 3630771 - G 90 -7.6 -5.00616 | CGCGTTGTTAAAAAA TGCTCA AGAC TGAGCA GCACACCGTTAACGG CJA_3057 3631147 - 3630821 - | hypothetical protein CJA_3058 3631252 - 3631154 - | hypothetical protein CJA_3059 3631515 - 3631300 - | hypothetical protein TERM 4687 3632142 - 3632154 + G 88 -10.5 -4.06687 | GCAGATGAACCTGAT CGGCG AAT CGCCG TTGTTTATGCGCAAT TERM 4688 3632203 - 3632187 - g 79 -2.2 -5.31456 | opp_overlap 3632191, overlap 3632189 3632190 GCAATTGATAAAAAA GATGGC CGCCT GCCATG CCGCCGTGCTGATTC TERM 4689 3632466 - 3632481 + G 72 -5.4 -4.56597 | gap 1, opp_overlap 3632464, overlap 3632466 3632467 CAGTCCCAAGGCACA G-GCAGC CCT GCTGCGC TTTTTACAAACCCAG mopR 3631675 - 3633162 + | MopR TERM 4690 3633248 - 3633210 - T 100 -15.5 -5.43414 | gap 1 AGCAGACACAAAAAA GCCGCTGC-ATTTAACAC CTGG GTGGTAAATAGCAGCGGC AACAGGCTTTGCTAG xylA 3634623 - 3633292 - | xylose isomerase TERM 4691 3634471 - 3634430 - G 72 -6.6 -4.25104 | gap 1 GTGCCTGGACCAAAA GGGTCGTGACCGGCACCAC AGAAA GTG-TGCCAGTAACAAACC GCAAATTTGAAATGC CJA_3062 3636147 - 3634666 - | xylulose kinase (xylulokinase) TERM 4692 3635035 - 3635069 + g 73 -9.3 -3.64716 | gap 1, opp_overlap 3635039, overlap 3635061 CAGGCCATGGCGGTT GAAATCCAGGTTGCGC AGCT GCGCA-CCGGGATTCC TGTTTTGGAAAATCC TERM 4693 3636307 - 3636279 - H 71 -9.8 -3.28447 | opp_overlap 3636274 3636272, overlap 3636277 GCATTGATGACAATA TATCTTATTGTC TATCT GACAACAAGATA AAAACAACGTAATTT nuhA 3636343 - 3637203 + | Nudix hydrolase TERM 4694 3637432 - 3637411 - g 79 -2.1 -5.29445 | overlap 3637412 CGGCAATAAGAAAAA TGCCGGCAC CAAC ATGCTGGCT GGTCATAATTTCAAT TERM 4695 3637524 - 3637538 + G 100 -11.4 -5.34381 | CTGATTAGTGTCATT GCCACC ATT GGTGGC TTTTTGTTTGGCTTT xylE 3637320 - 3638873 + | MFS transporter TERM 4696 3638898 - 3638911 + TF 100 -9.5 -5.65177 | opp_overlap 3638898 TTACATGCCTAAAAA CCGCC TTCG GGCGG TTTTTTTATGCCTCT TERM 4697 3638911 - 3638898 - Tf 93 -9.5 -4.61231 | opp_overlap 3638898 TTACATGCCTAAAAA CCGCC TTCG GGCGG TTTTTTTATGCCTCT CJA_3065 3639380 - 3639042 - | hypothetical protein TERM 4698 3639417 - 3639466 + GH 73 -3.5 -4.87626 | gap 1, overlap 3639420 TTCCGGTATTACCTA CAGTGCCGATGGCGTTACCT-TTG CCG CACTGGGTGATGGCGTGGGCGCTG TTTTTGATATTGCCC xyn10C 3639064 - 3640884 + | endo-beta-1,4-xylanase, xyn10C TERM 4699 3640955 - 3640903 - fH 73 -2.1 -5.09895 | gap 2, opp_overlap 3640915, overlap 3640927 CATTGATGTAAAAAA GGCTCCACCCATGCCGCTAAAAACG CTAGC CGCTTTT-GCGGCATCCATC-AGCC TGTTACTGGCCAGCC TERM 4700 3641509 - 3641491 - g 77 -12.4 -2.8294 | overlap 3641488 TATCGCCCACAACGA CGGCCCAC CCG GTGAGCCG CAATATGAAGGCCAT TERM 4701 3642556 - 3642585 + G 73 -11.6 -2.79183 | gap 1, opp_overlap 3642551 TGCCAGTATACTCAG CT-CCCACAAAGC AGGAG GCTTTGTGGGCAG TATGGTGGGCCTGCA gly43J 3640913 - 3642619 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J TERM 4702 3642694 - 3642713 + G 100 -5.7 -6.41881 | gap 1, overlap 3642695 CTCGTCAGATCCTGC G-CCAGCC CCTGT GGCTGGTC TTTTTTTTTCTTGTA TERM 4703 3642695 - 3642711 + G 95 -9.4 -4.81831 | overlap 3642694 TCGTCAGATCCTGCG CCAGCC CCTGT GGCTGG TCTTTTTTTTTCTTG TERM 4704 3644481 - 3644462 - g 72 -4.9 -4.62783 | CATGCAGGCCAAAAA CCAGCTG TATGCC CAGCAGG GTCGCGCCTCGGCCA TERM 4705 3644931 - 3644919 - g 76 -9.1 -3.74872 | ATTGATTGGAGCAAA GTCCC CAA GGGAC AGGCGAGTGGAAACG CJA_3068 3642600 - 3645548 + | hypothetical protein TERM 4706 3645789 - 3645812 + G 85 -13.8 -2.75074 | overlap 3645786 3645804 CTGGCAATTCTTTTA TCGCGGTGCC TATT GGCGCCGCGG TCCTGTTGGCATGAC rspA 3645577 - 3646785 + | Starvation sensing protein rspA TERM 4707 3646968 - 3646930 - g 79 -12.4 -3.05715 | opp_overlap 3646932, overlap 3646932 AATCTGCCGAGTCAA CACCAGCCACGGCTGCAC CCG ATGCAACCAGTGCTGGTG TTGCGCCGCCCAAGG TERM 4708 3647187 - 3647175 - g 77 -6.2 -4.62069 | opp_overlap 3647175 CTGTCACTGGAAAAA CCGG GCGAT CCGG TTGTCGACCATGGCG gly43G 3646845 - 3647972 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43G TERM 4709 3648028 - 3648000 - f 100 -13.3 -4.59773 | opp_overlap 3648000 GTTTATGCTTAAAAA TCCCGTAACAG TCCTGCG CTGTTACGGGA TTTTTATTGGTGCCG TERM 4710 3648000 - 3648028 + F 100 -14 -5.1356 | opp_overlap 3648000 GTTTATGCTTAAAAA TCCCGTAACAGT CCTGC GCTGTTACGGGA TTTTTATTGGTGCCG TERM 4711 3648698 - 3648661 - g 73 -3.5 -4.78077 | opp_overlap 3648668 CCTAAGCAAAATAAA CGGCCCATTTTCCAT TACCACCG ATGGAAAATTTACCG TAAGTATCGCGAATG CJA_3071 3648182 - 3648766 + | putative module of glucan-glucohydrolase TERM 4712 3648851 - 3648868 + T 95 -12.7 -4.07568 | opp_overlap 3648851 TTCAAAAAGAAAAAA GCCCTGC AATA GCAGGGC TTTTGACAAGCGAAG TERM 4713 3648868 - 3648851 - T 100 -12.7 -5.93252 | opp_overlap 3648851 TTCAAAAAGAAAAAA GCCCTGC AATA GCAGGGC TTTTGACAAGCGAAG CJA_3072 3652353 - 3648886 - | TonB-dependent receptor TERM 4714 3652630 - 3652616 - R 100 -8.5 -5.56264 | opp_overlap 3652616 TTTAAATATAAAAAA CCCGC TTATC GCGGG TTTAGGAAGATGAAA purA 3653996 - 3652659 - | adenylosuccinate synthetase TERM 4715 3653372 - 3653395 + g 77 -7.3 -4.49981 | GCAGCAATTCTTTAG CCCAGGCGG CACAAT CTGCCAGGG TTTTGTCATAGTCTA TERM 4716 3654020 - 3653996 - R 73 -10.8 -2.9924 | gap 1, overlap 3653998 TAAACAATTGAGACA TAG-CCCGCTC ACTG GAGCGGGACTA CCTGATACTTGCCGT hisZ 3655194 - 3654004 - | ATP phosphoribosyltransferase, regulatory subunit TERM 4717 3654116 - 3654126 + g 72 -8.2 -3.72576 | opp_overlap 3654103 3654102 ACCCGCTCACCACGC GCGC GAA GCGC TTTAATCGCCGCCCA CJA_3075 3655445 - 3655200 - | hypothetical protein TERM 4718 3655471 - 3655455 - R 100 -9.4 -5.76633 | GCACACATAAAAAAA CCGAGC TTCTG GCTCGG TTGCAGCATTTTAAC hflC 3656423 - 3655548 - | HflC protein TERM 4719 3655831 - 3655847 + g 72 -6.5 -4.41633 | TGTTCTTTACCCTGG GCGCG ATATTCA CGCGC TTCTTTTTCCCGGTC hflK 3657556 - 3656423 - | HflK protein CJA_3078 3658921 - 3657584 - | hypothetical protein TERM 4720 3658901 - 3658869 - G 100 -13.5 -4.08706 | opp_overlap 3658873, overlap 3658870 TGGCCATGAGACAAA TTCAGGTGAACCAGC ACA GCCAGTTCACCTGAT TCGGGGCGATCGAAA TERM 4721 3658900 - 3658870 - G 100 -17 -3.04902 | opp_overlap 3658873, overlap 3658869 GGCCATGAGACAAAT TCAGGTGAACCAGC ACA GCCAGTTCACCTGA TTCGGGGCGATCGAA hfq 3659221 - 3658955 - | Hfq protein miaA 3660360 - 3659344 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 4722 3660135 - 3660125 - G 77 -3.2 -5.1675 | overlap 3660128 GCATCCACTAAAAAA TCAG CGA CCGA ATAAGGCTCAGCCGG mutL 3662244 - 3660364 - | DNA mismatch repair protein MutL CJA_3082 3663629 - 3662241 - | N-acetylmuramoyl-L-alanine amidase TERM 4723 3662647 - 3662632 - G 77 -10.4 -3.64703 | TGGCGCTTATGCAAA TGGGCG ATCC CGCCCA TGGAGCGCAGCACAT CJA_3083 3663845 - 3663720 - | hypothetical protein CJA_3084 3664102 - 3663914 - | hypothetical protein CJA_3085 3666320 - 3664107 - | putative sensory box protein TERM 4724 3664456 - 3664477 + g 91 -5.1 -5.40474 | opp_overlap 3664439 3664453, overlap 3664457 GAGGTGTAGACACCC AGCTCACTT AACT GAGTGAGCA TTTTTTTCACACGCT TERM 4725 3664457 - 3664476 + g 72 -8.6 -3.83561 | opp_overlap 3664453, overlap 3664456 AGGTGTAGACACCCA GCTCACTT AACT GAGTGAGC ATTTTTTTCACACGC TERM 4726 3665445 - 3665463 + g 77 -10.2 -3.60627 | GCGCAACTCCTGGGT GCGCAGGG CAA CCGTGCGC TTTAGGCTCCAGTAC TERM 4727 3665895 - 3665883 - G 71 -9.1 -3.53012 | overlap 3665868 TTGCTGGTGGGCAAA GGAGG CTT CCTCC ACCGCAACACGCTTA TERM 4728 3666013 - 3666003 - G 93 -8.2 -5.06414 | CGTTGTGAATAAAAA GCGC TGG GCGC GCTCGGGCGAGTAGT CJA_3086 3666994 - 3666515 - | conserved hypothetical protein TIGR00150 TERM 4729 3666650 - 3666634 - G 75 -11.5 -3.01924 | overlap 3666621 3666636 CAGGCTCGGGTAAGA CACCCGC ACC GCGGGCG GGCCACTCGACCAGG TERM 4730 3666648 - 3666636 - G 72 -10.5 -3.06696 | overlap 3666621 3666634 GGCTCGGGTAAGACA CCCGC ACC GCGGG CGGGCCACTCGACCA TERM 4731 3666848 - 3666827 - G 71 -9.3 -3.53012 | opp_overlap 3666845, overlap 3666839 GCCCTGGTGGCCAAA GGCGCGCAG TAAC CCGCGCGTC AGGGTCGTTTTACCC CJA_3087 3668518 - 3667004 - | YjeF family protein TERM 4732 3667923 - 3667904 - G 70 -10 -3.21593 | gap 1, opp_overlap 3667912, overlap 3667902 CACTTCGCCACAATA TG-CCGGGC CGC GCCCGGTCA GCAGGCCGCGTTTGA TERM 4733 3668774 - 3668760 - g 80 -11.4 -3.3452 | TACAGCAGGCCATAA CCAGCC AAT GGCTGG AGCCGGCATGGCAAC TERM 4734 3669301 - 3669278 - g 70 -4.4 -4.57341 | opp_overlap 3669279 3669280, overlap 3669279 3669280 AAGCTCTGGCAAAAA CTCCTGCCGC GCCT GGGGCAGGTA TTTGGCGATGGACAA TERM 4735 3669561 - 3669587 + G 71 -10.8 -2.84325 | opp_overlap 3669561, overlap 3669558 3669556 GCCTGCTGCAGCAAA GCCAGTCGCTGG AAG TCGGCAACTGGC TGGTCTTTGAAACAG TERM 4736 3669587 - 3669561 - g 79 -10.1 -3.72576 | opp_overlap 3669561 3669558 3669556 GCCTGCTGCAGCAAA GCCAGTCGCTG GAAGT CGGCAACTGGC TGGTCTTTGAAACAG TERM 4737 3669873 - 3669860 - g 71 -9.5 -3.47227 | GTGCAAGCACGACAA GCGGC TGAA GCCGC CGAGCGCGCCATGCA TERM 4738 3669989 - 3669966 - g 91 -8.1 -5.09221 | overlap 3669968 CAGAAGAAAAAGAAA GGCGCGCAG TCGAGG CTGCACACC TGCGCGAGCAACAGC CJA_3088 3668594 - 3670321 + | hypothetical protein CJA_3089 3670318 - 3670704 + | hypothetical protein TERM 4739 3670735 - 3670707 - gT 100 -15.5 -4.37092 | opp_overlap 3670713 3670714, overlap 3670714 AGCGTCGTCATAAAA CAAAAAACTCTCC GGC GGAGAGCTTTTTG CACACAACGATCAAT TERM 4740 3670713 - 3670729 + GT 78 -6.5 -4.56597 | opp_overlap 3670707 3670714, overlap 3670714 GTCATAAAACAAAAA ACTCTCC GGC GGAGAGC TTTTTGCACACAACG TERM 4741 3670728 - 3670714 - gT 100 -10 -5.86976 | opp_overlap 3670713 3670714, overlap 3670707 TCATAAAACAAAAAA CTCTCC GGC GGAGAG CTTTTTGCACACAAC TERM 4742 3670714 - 3670728 + GT 73 -10 -3.33744 | opp_overlap 3670714 3670707, overlap 3670713 TCATAAAACAAAAAA CTCTCC GGC GGAGAG CTTTTTGCACACAAC CJA_3091 3670667 - 3670762 + | hypothetical protein CJA_3090 3671483 - 3670755 - | hypothetical protein TERM 4743 3670875 - 3670905 + g 73 -11.8 -2.71144 | ACTGCTGCTGCCCAT GAGTTGGCGGCTGG GCA CCAACTGCCAACGC TCATTGCCGCGGGTA CJA_3092 3672359 - 3671583 - | hypothetical protein TERM 4744 3673160 - 3673170 + G 72 -4.6 -4.72272 | opp_overlap 3673152 3673154, overlap 3673152 TTATTAACAGCAGTG CCGG CAG CTGG TTTTTCCTGGGCGAA CJA_3093 3672568 - 3673755 + | iron-sulfur cluster-binding protein TERM 4745 3675275 - 3675263 - g 75 -5.5 -4.67641 | overlap 3675267 ACGCCAAAAGCAAAA CCGAT CCC ACCGG GGTACCGGCACCATC CJA_3094 3673897 - 3675435 + | hypothetical protein CJA_3095 3675466 - 3675972 + | hypothetical protein TERM 4746 3676276 - 3676296 + G 70 -11.1 -2.749 | opp_overlap 3676274, overlap 3676275 3676273 CGTGTTGCAGATAGG TGCCTGGCG CAA CGCCAAGCA GTGTTATTTCGATTA TERM 4747 3676420 - 3676432 + G 71 -9.1 -3.54935 | overlap 3676409 GCACTGGCTCGGCAC CAGCC TGC GGCTG TTTCCCAGCGATTTC CJA_3096 3675983 - 3677971 + | hypothetical protein TERM 4748 3677985 - 3678007 + F 100 -17 -4.73677 | opp_overlap 3677985 AAGGCTTTCACTCAA CGGGCAGTGC CTG GCGCTGCCCG TTTCTTTGTTGTCGC TERM 4749 3678007 - 3677985 - f 88 -14.8 -3.05715 | opp_overlap 3677985 AAGGCTTTCACTCAA CGGGCAGTGC CTG GCGCTGCCCG TTTCTTTGTTGTCGC TERM 4750 3678522 - 3678504 - f 83 -4.6 -5.4182 | AATGACAAACAAAAA CAAAACAT AGA ATGTGTTG CTGAAAAAAATAGAA TERM 4751 3679630 - 3679614 - g 72 -5.1 -4.57837 | AGATGGCCTGAAAAA GCTGTAT GAA ATGCAGC GTGAATCTTATTTAC CJA_3097 3678805 - 3679671 + | hypothetical protein TERM 4752 3679686 - 3679706 + F 100 -15.5 -5.40014 | opp_overlap 3679683 AAGGTAAAAATTTGG GGGGATCGA AAT TCGATCCCC TTTTTATTATTATTT CJA_3098 3679777 - 3680592 + | dehydrogenase subunit TERM 4753 3680693 - 3680668 - f 70 -4.8 -4.53047 | opp_overlap 3680668 ACTAAATAGAAGAAA TAGCCAGA TCTTTTCCCG TCTGGCTA TTTTTTTGTAACGCA TERM 4754 3680668 - 3680693 + F 88 -5.5 -5.60993 | opp_overlap 3680668 ACTAAATAGAAGAAA TAGCCAGAT CTTTTCCC GTCTGGCTA TTTTTTTGTAACGCA TERM 4755 3680758 - 3680738 - f 77 -8.9 -3.90744 | overlap 3680723 GCGCCCCTCAAAGAA GCACTGCCC ATA GAGCGGTGC CATTAAACAAAATCG gnd 3680891 - 3682345 + | 6-phosphogluconate dehydrogenase, decarboxylating TERM 4756 3682373 - 3682396 + F 100 -16.8 -4.84761 | opp_overlap 3682373 GATAGAAAATAAAAA GGCCGGATCA GTGA TGATCCGGCC TTTTTATACCGCTAT TERM 4757 3682396 - 3682373 - f 100 -16.8 -5.58522 | opp_overlap 3682373 GATAGAAAATAAAAA GGCCGGATCA GTGA TGATCCGGCC TTTTTATACCGCTAT TERM 4758 3682954 - 3682939 - f 100 -9 -4.98522 | opp_overlap 3682939 3682938 AATGCGACATAAAAA GCACGA TAAA TCGTGC CTTATGGCCTATCCA TERM 4759 3683877 - 3683896 + G 78 -7.8 -4.34402 | CTATCGGCAAGTTCG CTGGAAGC GCTG GCTGCCAG TTTTAGTGTGCCAAC TERM 4760 3684208 - 3684198 - g 88 -8.2 -4.68994 | opp_overlap 3684198 3684197 AGCACGATGGAAAAA GGCG AGG CGCC GTTTGCTCTGGAGGA CJA_3100 3683697 - 3684377 + | hypothetical protein TERM 4761 3684459 - 3684448 - g 79 -2.2 -5.21709 | gap 1, opp_overlap 3684449, overlap 3684449 TTTTATATTAAAAAA GCGGC CGA GCC-C TTTGATGCGATTGTC TERM 4762 3685232 - 3685211 - g 70 -6.5 -4.18018 | opp_overlap 3685218, overlap 3685212 CGGCGGCAGTCAAAA CCGGCAACC TGAC GGTTGCCAC CGACAGCATTGTGCA TERM 4763 3685695 - 3685685 - g 100 -2.4 -5.85244 | AACTAAAACAAAAAA TCCG CAC CGGT GGCGATTGGATTTTC CJA_3101 3684415 - 3686160 + | oxidoreductase, GMC family TERM 4764 3686882 - 3686862 - g 78 -9 -3.98214 | gap 1, overlap 3686863 ACGACTCACTACAAA GCC-TCGGC TCCC GCCGAAGGC AATAGTGAACACCCC TERM 4765 3687009 - 3686985 - g 74 -10.7 -3.25823 | CTGGTTGTAGAGCAA GAGTCCTACCC TGA GGGTATGACCC CCATGCAAAGTGTCG CJA_3102 3686196 - 3687071 + | hypothetical protein TERM 4766 3687052 - 3687071 + F 74 -3.6 -5.06451 | AAGGCCTGCAACGCA TTATTGCG GATA TGCAGTAA TTTTTTGCGCTGCTA ce2C 3687114 - 3688196 + | acetyl xylan esterase, putative, axe2A TERM 4767 3688273 - 3688238 - T 100 -22.2 -3.14051 | opp_overlap 3688241 3688247, overlap 3688241 3688247 GGATGTGTACGAAGA TAATCAAAAGGCCTGC AATT GCAGGCCTTTTGATTA GTGCGGAGGGAAGTA TERM 4768 3688241 - 3688270 + T 100 -19.5 -3.14132 | opp_overlap 3688238 3688241 3688247, overlap 3688247 TGTGTACGAAGATAA TCAAAAGGCCTGC AATT GCAGGCCTTTTGA TTAGTGCGGAGGGAA TERM 4769 3688270 - 3688241 - T 100 -19.5 -3.71284 | opp_overlap 3688241 3688247, overlap 3688238 3688247 TGTGTACGAAGATAA TCAAAAGGCCTGC AATT GCAGGCCTTTTGA TTAGTGCGGAGGGAA TERM 4770 3688264 - 3688247 - T 100 -12.7 -4.56314 | opp_overlap 3688247 3688241, overlap 3688241 3688238 CGAAGATAATCAAAA GGCCTGC AATT GCAGGCC TTTTGATTAGTGCGG TERM 4771 3688247 - 3688264 + T 100 -12.7 -4.45544 | opp_overlap 3688241 3688238 3688247, overlap 3688241 CGAAGATAATCAAAA GGCCTGC AATT GCAGGCC TTTTGATTAGTGCGG pel10A 3690245 - 3688296 - | pectate lyase, pel10A TERM 4772 3689142 - 3689154 + g 70 -6.2 -4.27443 | GTAATCCAGGTTCTT CGGC CAGCC GCCG TTATTTTGCTGGTAA CJA_3105 3690893 - 3690798 - | hypothetical protein cbp2B 3691018 - 3693474 + | carbohydrate binding protein, putative, cbp2B TERM 4773 3693511 - 3693481 - f 74 -8.2 -3.8646 | overlap 3693484 3693496 TATCAATAACTTAAA TAGCTCGCCAACCG ATT CGGCCGCCGACCTA AAGGGCGGCTGAATC TERM 4774 3693625 - 3693602 - f 75 -3.2 -5.1675 | gap 1, overlap 3693604 CGACTTATTAAAAAA TTGCA-AAGGA GCG TCCTTATGCCA AGTCACTGCATCAAA cbp2C 3693620 - 3695929 + | carbohydrate binding protein, putative, cbp2C TERM 4775 3695982 - 3695934 - T 79 -11.8 -3.12895 | opp_overlap 3695942 3695942, overlap 3695937 3695938 CGCGGGATTAACACA CAAGCATCTGCTCACTGCTGCA CACCT TGCAGCAGTGAGCCATTGTTTA TTCACTAGGGAATTT TERM 4776 3695979 - 3695937 - T 86 -11.3 -3.70722 | opp_overlap 3695942 3695942, overlap 3695934 3695938 GGGATTAACACACAA GCATCTGCTCACTGCTGCA CACCT TGCAGCAGTGAGCCATTGT TTATTCACTAGGGAA TERM 4777 3695978 - 3695938 - T 87 -14.8 -2.81951 | opp_overlap 3695942 3695942, overlap 3695937 3695934 GGATTAACACACAAG CATCTGCTCACTGCTGCA CACCT TGCAGCAGTGAGCCATTG TTTATTCACTAGGGA TERM 4778 3695942 - 3695975 + T 100 -14.8 -4.22554 | gap 1, opp_overlap 3695938 3695937 3695934, overlap 3695942 TAACACACAAGCATC TG-CTCACTGCTGCA CACCT TGCAGCAGTGAGCCA TTGTTTATTCACTAG TERM 4779 3695942 - 3695974 + T 100 -16.4 -3.12809 | opp_overlap 3695938 3695937 3695934, overlap 3695942 TAACACACAAGCATC TGCTCACTGCTGCA CACCT TGCAGCAGTGAGCC ATTGTTTATTCACTA CJA_3108 3697059 - 3696043 - | lipase family protein CJA_3109 3697171 - 3697043 - | hypothetical protein CJA_3110 3697261 - 3698139 + | beta-lactamase CJA_3111 3698444 - 3698280 - | hypothetical protein TERM 4780 3698608 - 3698618 + Gr 85 -8.2 -4.5442 | AGGGTTGATGATATT CCGG TGA CCGG TTTTATCCTTAAGCC CJA_3112 3698344 - 3699336 + | putative dipeptidyl peptidase IV CJA_3113 3699649 - 3699347 - | hypothetical protein CJA_3114 3700068 - 3699751 - | hypothetical protein CJA_3115 3701113 - 3700121 - | putative lipoprotein pme8B 3701401 - 3701180 - | pectin methylesterase putative, pme8B TERM 4781 3701547 - 3701560 + r 100 -3.8 -6.09888 | AACCATTATTCGCAT CGGA ACGCGC TCCG TTTTTTTTATTGAAG TERM 4782 3701654 - 3701639 - R 93 -6.8 -5.64274 | opp_overlap 3701638 3701639 GCACCCATAAAAAAA GCGACC TAAC AGTCGC CTTTGCAATACGTCA orn 3702234 - 3701677 - | oligoribonuclease TERM 4783 3702439 - 3702404 - g 70 -10.3 -3.2045 | overlap 3702402 AAAAATCCAGGAAGA GCGCAGTGCCCGCGC GGCCCG GCGCGACCAGCGCGC CGATGAGCAGTTGGG TERM 4784 3702474 - 3702460 - g 71 -9.2 -3.5393 | AGCAGTTGGGCGAAA CCGACC TGG GGCCGG AACAGCAGGGGCTGA CJA_3118 3702330 - 3703370 + | GTPase, YjeQ family rhdA 3703401 - 3704213 + | rhodanese TERM 4785 3704244 - 3704267 + T 100 -10.2 -5.40072 | opp_overlap 3704244 ATTGCTGAAAAAAAA CAGGCCACCT CAAA GGGCGGCCTG TTTTTTTAACGCAGA TERM 4786 3704267 - 3704244 - T 100 -11.7 -5.75945 | opp_overlap 3704244 ATTGCTGAAAAAAAA CAGGCCACC TCAAAG GGCGGCCTG TTTTTTTAACGCAGA pel1G 3706496 - 3704298 - | pectate lyase, putative, pel1G TERM 4787 3706478 - 3706466 - G 70 -10.5 -2.72799 | overlap 3706463 GGGTGATAGATACCA GGCCG GAT CGGCC AGACCAAAAATGCAA CJA_3121 3707777 - 3706713 - | hypothetical protein TERM 4788 3707257 - 3707270 + g 93 -3.8 -5.47218 | CCAGTTTTTTCTGCA CGAG CTTCAA CTCG TTTTTTTAACTCCGA CJA_3122 3708069 - 3707761 - | hypothetical protein TERM 4789 3709173 - 3709190 + GH 72 -8.4 -3.74251 | CCCTACGTCACCAGC CGCCAG CTGATC CTGGCG TTTGATAACCATCTG TERM 4790 3709487 - 3709465 - gH 79 -9.8 -3.72968 | ACCACCAGACCCAAA TCGCCCGCGA AAC CCGCGAGCAA CAGGAGCGCCGCCAG TERM 4791 3709907 - 3709889 - gH 77 -11 -3.25823 | overlap 3709893 CTGGCGCGACAGCAA CCAACTGC ACA GCAGCTGG AATACCAAATTTTTG CJA_3123 3708978 - 3710081 + | hypothetical protein TERM 4792 3710434 - 3710453 + GF 72 -10 -3.28924 | gap 1 TATACCTGGAGCCAT CCGGCGGTG TAT CAC-GCCGG TTGTGCCAGCGACTG TERM 4793 3710457 - 3710471 + GF 72 -6.4 -4.36914 | overlap 3710459 3710467 GTATCACGCCGGTTG TGCCAG CGA CTGGTA TTTTCTCGCCAGCAA CJA_3124 3710044 - 3710670 + | hypothetical protein acm73A 3710704 - 3711501 + | endo-beta-N-acetylglucosaminidase, putative, acm73A TERM 4794 3711643 - 3711624 - f 74 -3.6 -5.00846 | TAAATAGGATAAAAA TACAACGA CTCT CCGTTATA AGTATTTATTTTATC TERM 4795 3713027 - 3713004 - g 70 -6 -4.25283 | gap 1 AGGTGGCGATGAAAA TCGG-CCCCAA TGC CTGGAGTCCGA GCGGTACCGGTTGGA TERM 4796 3713634 - 3713652 + G 70 -6.7 -4.06001 | gap 1 TCAATGTGTTCCAGC GTGGCAGC TCCA GC-GCCAC TTTCGTTAATTTCTA amy13I 3711848 - 3713668 + | alpha-amylase, putative, amy13I TERM 4797 3713719 - 3713736 + T 100 -12.7 -5.55769 | opp_overlap 3713719 TCCAGCCACAAAAAA CGGCAGC TTCG GCTGCCG TTTTTTGTTATGCGA TERM 4798 3713736 - 3713719 - T 100 -12.7 -5.28176 | opp_overlap 3713719 TCCAGCCACAAAAAA CGGCAGC TTCG GCTGCCG TTTTTTGTTATGCGA pda4D 3714876 - 3713767 - | polysaccharide deacetylase, putative, pda4D TERM 4799 3714288 - 3714302 + g 79 -10 -3.85114 | opp_overlap 3714282, overlap 3714277 GATAGGCAAGGATCA TCGGTG CTT CACCGA TTTCCTGTGCAATTT CJA_3128 3718317 - 3714952 - | hypothetical protein TERM 4800 3715712 - 3715696 - GH 72 -8.7 -3.72576 | overlap 3715698 TTGTTCTGCACTAAA TACCTCC GGC GGAGGCA GCACCATGGAGAAAT TERM 4801 3715710 - 3715698 - GH 71 -9.1 -3.44848 | overlap 3715696 GTTCTGCACTAAATA CCTCC GGC GGAGG CAGCACCATGGAGAA CJA_3129 3717704 - 3717865 + | hypothetical protein CJA_3130 3717768 - 3717944 + | hypothetical protein TERM 4802 3717975 - 3717950 - GT 72 -7.6 -3.90316 | opp_overlap 3717950 3717968 ACCGGGGTAAAAATA GAGCCGGA CGGTTCTTGT TCCGGCTC GGGTTGTGGCTCACG CJA_3131 3718675 - 3718406 - | hypothetical protein TERM 4803 3718763 - 3718747 - R 100 -13.7 -5.62045 | ACACAGAATAAAAAA GGTGGGG AAA CCCCACC TTGACCGAGCGCCAT parC 3721039 - 3718781 - | DNA topoisomerase IV, A subunit TERM 4804 3719140 - 3719166 + g 84 -3.6 -5.3104 | opp_overlap 3719128, overlap 3719141 ATACCTGCGCATTAT CCGGCAGGGT CAGCAGC GCCTTGCCGC TTTTATTTTTACTGG CJA_3133 3721612 - 3721112 - | putative lipoprotein CJA_3135 3721680 - 3722081 + | hypothetical protein CJA_3134 3722455 - 3722078 - | hypothetical protein CJA_3136 3723233 - 3722505 - | hypothetical protein glob1 3723873 - 3723226 - | metallo-beta-lactamase superfamily protein TERM 4805 3723492 - 3723457 - G 73 -3.9 -4.85599 | gap 1, overlap 3723459 3723464 3723488 CTCACGGCAGAAAAA CACCACATGGCCCGGG GTATG CCCGGGACA-ATGGAA TACCTCCAGCTCCGC TERM 4806 3723490 - 3723459 - G 77 -8.7 -4.05067 | gap 1, overlap 3723457 3723464 3723488 CACGGCAGAAAAACA CCACATGGCCCGGG GTATG CCCGGGACA-ATGG AATACCTCCAGCTCC TERM 4807 3723486 - 3723464 - G 72 -10.5 -3.07439 | overlap 3723459 3723457 CAGAAAAACACCACA TGGCCCGGG GTATG CCCGGGACA ATGGAATACCTCCAG CJA_3138 3724581 - 3723931 - | hypothetical protein TERM 4808 3724482 - 3724466 - G 76 -12.3 -2.64735 | ATCGCACGCACATCA CCTGCTG GCT CAGCAGG CTCCCGACCAAACTG TERM 4809 3724639 - 3724612 - R 100 -11.3 -4.91873 | overlap 3724631 GATATCAACCAAAAA CACCGGCAGCA ACCCAA CACTGCCGGTG GCGAATCAACCTGTG cbp33/10B 3725679 - 3724666 - | chitin binding protein, putative, cbp33/10B TERM 4810 3725907 - 3725890 - H 84 -14.1 -2.84325 | opp_overlap 3725890, overlap 3725887 3725885 GCGCCTTAAATATCA CCCCGGG TTAC CCCGGGG TCTCATCCAAGGACA TERM 4811 3725890 - 3725907 + H 84 -14.1 -2.78384 | opp_overlap 3725890 3725887 3725885 GCGCCTTAAATATCA CCCCGGG TTAC CCCGGGG TCTCATCCAAGGACA TERM 4812 3726298 - 3726278 - H 82 -11.1 -3.54424 | opp_overlap 3726294, overlap 3726290 GCGGATTGCGGCAAA CCTCGCCAC GAA GCAGCGAGG GGCTCCGCTGCAAAC TERM 4813 3727263 - 3727283 + G 79 -9.7 -3.71284 | TTGCCATTTTCGATA CCGACATAG GCC CTATGGCGG TTGTGTTAGTCGGCG psd 3726695 - 3727543 + | phosphatidylserine decarboxylase TERM 4814 3727598 - 3727561 - T 100 -23.1 -3.09516 | opp_overlap 3727570, overlap 3727570 TTTTGCAGCACCCAA TAACAAAAAGGCCGATC AATC GATCGGCCTTTTTGTTA GCTTCCAGCTCAAAC TERM 4815 3727570 - 3727589 + T 100 -13.6 -5.13741 | opp_overlap 3727561 3727570 ACCCAATAACAAAAA GGCCGATC AATC GATCGGCC TTTTTGTTAGCTTCC TERM 4816 3727589 - 3727570 - T 100 -13.6 -5.30348 | opp_overlap 3727570, overlap 3727561 ACCCAATAACAAAAA GGCCGATC AATC GATCGGCC TTTTTGTTAGCTTCC CJA_3141 3728368 - 3727613 - | Integral membrane protein TerC family superfamily CJA_3142 3728500 - 3728381 - | hypothetical protein TERM 4817 3728472 - 3728489 + g 100 -11.3 -4.77036 | opp_overlap 3728472 TCCTGCATAAAAAAA CCAGAGC CAAT GCTCTGG TTTTTGGTCATCCGG TERM 4818 3728489 - 3728472 - G 100 -11.3 -5.60993 | opp_overlap 3728472 TCCTGCATAAAAAAA CCAGAGC CAAT GCTCTGG TTTTTGGTCATCCGG CJA_3143 3729892 - 3728525 - | HD domain protein TERM 4819 3728666 - 3728676 + g 72 -4.6 -4.63486 | TTCAATTTTCTCAAT CTCG TAG CGGG TTTTCTTACCGGAAT TERM 4820 3729799 - 3729788 - G 72 -7.2 -4.18197 | ATCGCGCAGGTAAAA CCCC TGCA GGGG AAAAGGCGTCTGTGA TERM 4821 3730096 - 3730065 - R 79 -8.6 -4.21997 | overlap 3730077 TAATCAAGAAAAAGA GGCGACACCAGACT GGGC AGACTGGCGCCGAC AACCAGTTACCCAGC hemE 3731173 - 3730103 - | uroporphyrinogen decarboxylase TERM 4822 3730231 - 3730210 - G 70 -3.7 -4.62069 | gap 1, overlap 3730213 GTCCCAGGTTAAAAA TAT-GGCCGG AGC CCTGCCCATA GGCAGCGAGGATATT CJA_3145 3732851 - 3731268 - | Na/Pi cotransporter family protein TERM 4823 3731929 - 3731914 - G 70 -10.4 -3.24232 | overlap 3731912 3731910 CGCTCGGGAAAGAGA CGCGCT ATAA AGCGCG CGTAGTAACCGATAA TERM 4824 3732904 - 3732857 - R 74 -8.4 -3.8397 | gap 1, opp_overlap 3732858 3732859, overlap 3732858 ACATATCCATAAGAA GCCCCTTGCTTTC-AAGCGCGGC AGT GCCGCGCGCAAAAAGGAAGGGAT TATACGTTCAAGTAA TERM 4825 3732903 - 3732858 - R 77 -11.9 -2.89659 | gap 1, opp_overlap 3732858 3732859, overlap 3732857 CATATCCATAAGAAG CCCCTTGCTTTC-AAGCGCGGC AGT GCCGCGCGCAAAAAGGAAGGGA TTATACGTTCAAGTA gltD 3734319 - 3732904 - | glutamate synthase, small subunit CJA_3147 3738796 - 3734342 - | glutamate synthase large chain precursor TERM 4826 3737425 - 3737453 + g 70 -5.2 -4.42238 | GGAACATCTTCATAT TGGCTTTGAGCG CAATC CCCTCCAGGCCA TTTTCCTTGGCGTCG TERM 4827 3738913 - 3738895 - R 100 -8.8 -5.37043 | ACCCCAGACAAAAAA GCCCCTGA GGT TTAGGGGC TGGGCAAATGGGCGC CJA_3148 3739511 - 3739053 - | putative lipoprotein CJA_3149 3739640 - 3740770 + | hypothetical protein CJA_3150 3742287 - 3740776 - | tryptophan halogenase TERM 4828 3741141 - 3741157 + g 80 -11.5 -3.28712 | opp_overlap 3741141 3741140 GCACCTCTTCATAAT CTGCCGC AAT GCGGCGG TTGTAGGCGCGCGCC CJA_3151 3743253 - 3742312 - | transcriptional regulator, LysR family TERM 4829 3742532 - 3742518 - G 88 -11.4 -3.74077 | CCCGACACAGTGAAA CCTCCG CTG CGGAGG CGGGAACTATGCTAA TERM 4830 3743730 - 3743757 + GH 74 -7.6 -4.07687 | GCCTTTACATGTTCC TGGTAGGCTTGG GATT CCGCGCCGACCA TTTTAAAACCAACGT TERM 4831 3744067 - 3744080 + GH 70 -9.5 -3.05384 | overlap 3744064 3744067 ATTGGCCAGCTTTGG CGCCG GTGC CGGCG TTGCCTACACCGCCA CJA_3152 3743474 - 3744784 + | cation:proton antiporter TERM 4832 3744812 - 3744831 + GT 100 -10.6 -5.26316 | TTTTGCCAATCCTCA GCCCGGTC TCAC GCCCGGGC TTTTTTATGCCATCG CJA_3153 3744738 - 3745853 + | PEP-CTERM putative exosortase interaction domain protein TERM 4833 3745878 - 3745894 + T 100 -15.1 -5.31456 | opp_overlap 3745878 ATACCGCAGTAAAAA GGGCGCC TAA GGCGCCC TTTTTTGTGGCTTGC TERM 4834 3745894 - 3745878 - T 100 -15.1 -4.74132 | opp_overlap 3745878 ATACCGCAGTAAAAA GGGCGCC TAA GGCGCCC TTTTTTGTGGCTTGC CJA_3154 3746103 - 3745957 - | hypothetical protein TERM 4835 3746107 - 3746119 + H 86 -4.1 -5.4833 | opp_overlap 3746107, overlap 3746101 TAGCGACGTCAAAAA TCGTT CCC GACGA TTTTTTGTTGCCTCG TERM 4836 3746701 - 3746689 - g 73 -9.1 -3.6682 | CTGGAGGTACTCAAA CCGGA TTT TCCGG GCCTGGAGCTGATGC CJA_3155 3746242 - 3747012 + | hypothetical protein TERM 4837 3747102 - 3747112 + G 70 -4.6 -4.52669 | TGTGATCCTGGTGCT CTCC TTC GGGG TTTATTTCACTTATT TERM 4838 3747452 - 3747466 + G 71 -2.8 -4.77036 | GGCTCGCCGCCGCAT TCACCA GCC TGGTAA TTTTTGATAATGCCC gt39A 3747043 - 3748545 + | glycosyl transferase, putative, gt39A CJA_3157 3748548 - 3749105 + | putative serine protease TERM 4839 3749123 - 3749146 + T 100 -16.8 -5.67063 | opp_overlap 3749123 TCCCGCAACAAAAAA TAAGGCCCGC CTAG GCGGGCCTTA TTTTTTTATGGTGAA TERM 4840 3749146 - 3749123 - T 100 -16.8 -5.4505 | opp_overlap 3749123 TCCCGCAACAAAAAA TAAGGCCCGC CTAG GCGGGCCTTA TTTTTTTATGGTGAA CJA_3158 3749797 - 3749171 - | hypothetical protein TERM 4841 3749872 - 3749839 - R 72 -5.1 -4.70887 | overlap 3749840 TTATCAATAAAGAAA TGGCCCTAACGCAGG TGCT CGCGCACCAGGGCCG GGGTAAGTACTTGCG CJA_3159 3751901 - 3749844 - | thiol-disulfide interchange protein DsbD homolog TERM 4842 3750560 - 3750536 - G 76 -4.1 -4.94992 | overlap 3750527 3750537 3750538 CCAAACCGATAAAAA TCGCCATCGCC GAC AGCGGTGGCAG GCTGGCAGACGCCCC TERM 4843 3751668 - 3751654 - G 72 -7 -4.18018 | CCCCGCCAGTCAAAA CGGGGC GCC GCACCG GAATCGCCAGGGTTG TERM 4844 3752040 - 3752019 - R 100 -13.1 -5.5112 | opp_overlap 3752019 CCGATCAATAAAAAA GCCGCATAT TTGC ATATGCGGC TTTTGGCAAGCAGGG TERM 4845 3752019 - 3752040 + r 95 -13.1 -4.07568 | opp_overlap 3752019 CCGATCAATAAAAAA GCCGCATAT TTGC ATATGCGGC TTTTGGCAAGCAGGG CJA_3160 3755056 - 3752066 - | tonB dependent receptor-related protein TERM 4846 3752661 - 3752649 - G 75 -6.9 -4.4261 | overlap 3752650 TCGGGAACATCAAAA CCCGC CGC GCGGA AATCAAAGTTCTCAA TERM 4847 3754261 - 3754236 - G 72 -6.1 -4.36127 | TGGAACAATTCAAAA CCGTCACTAAT CGCA ACCAGTGTCGG GCGCTGGGAAGGATC TERM 4848 3754667 - 3754648 - G 74 -10.8 -3.19175 | opp_overlap 3754647 3754643 CTTCAACAGATTGAA TCAGTTCC GATG GGAACTGA CTGAATTCCATGGCA TERM 4849 3754954 - 3754968 + g 72 -6.4 -4.32177 | CAACGACTTCTTCAA CGGTTG GAT CAACTG TTTCTTGTGCAATAA TERM 4850 3755037 - 3755047 + g 79 -2.6 -5.2422 | GCAGCGGCAATAGGT TTTA CAG TAAA TTTTTTCATGTGCTT pul13B 3759652 - 3755132 - | pullulanase, putative, pul13B CJA_3162 3761384 - 3760104 - | hypothetical protein TERM 4851 3760876 - 3760897 + g 79 -10.1 -3.85698 | opp_overlap 3760865 3760889 3760890 ATAACCAGCGTCAGG TCGCAGCGA TAAA TCGCCGCGA TTTCTCGCAGGGCCA CJA_3163 3762640 - 3761381 - | NAD(FAD)-utilizing dehydrogenase TERM 4852 3761446 - 3761417 - G 74 -10.7 -3.16267 | opp_overlap 3761444 CTGAATGATACCCAA GCCTGCCTGTC GCCCTGTT GCCAGGCAGGC CGTTAGCAAATAACC TERM 4853 3762124 - 3762103 - G 80 -11.5 -3.36289 | overlap 3762082 CACCATCGGAACCAA GGCGCTGCC AACT GGCACCGCC CAGTGCCAACAGGAT TERM 4854 3762674 - 3762646 - R 95 -11.7 -4.00234 | opp_overlap 3762646 TAATCAACATAACAA CGCCGATGCAAAA TAC CCTGGCATCGGCG TTTTTTCAGCGAGTA TERM 4855 3762646 - 3762674 + r 100 -10.3 -5.0133 | opp_overlap 3762646 TAATCAACATAACAA CGCCGATGCAA AATACCC TGGCATCGGCG TTTTTTCAGCGAGTA CJA_3164 3764727 - 3762709 - | sialic acid-specific 9-O-acetylesterase TERM 4856 3763797 - 3763809 + g 100 -9.1 -5.252 | CGACAATCGCCCCCA GCCAC AAG GTGGC TTTTTTATCGGCCTG TERM 4857 3764545 - 3764568 + g 72 -4.5 -4.60487 | gap 1, opp_overlap 3764557 ATGGGTAACCGCCTC GTGCCCG-GC AAAGC GCACGCGCAC TTTTTCGCCCTCGTC CJA_3165 3765152 - 3764844 - | hypothetical protein TERM 4858 3765237 - 3765212 - R 95 -13.3 -4.10453 | overlap 3765216 CAAACCCCGCTAAAA CAAAGCCCGGT ATTA ACCGGGCTGTG GGGAATATTATTTTA TERM 4859 3765233 - 3765216 - R 100 -12.7 -4.64861 | overlap 3765212 CCCCGCTAAAACAAA GCCCGGT ATTA ACCGGGC TGTGGGGAATATTAT CJA_3166 3768124 - 3765245 - | peptidase, M16 (pitrilysin) family TERM 4860 3765646 - 3765627 - G 75 -5 -4.81814 | gap 1 ACCAGCATAATAAAA CCGG-GAAT ATC ATCCACCGG ATACTCGCGGCTCAT TERM 4861 3766117 - 3766136 + g 73 -4.2 -4.83615 | overlap 3766105 GGCGGAACACATGGT CCTTGCTG CGGT TGGCGAGG TTTTTCTGCAAGGTA TERM 4862 3768071 - 3768052 - G 70 -5.6 -4.30576 | opp_overlap 3768065 GGGTCAGGAGCAAAA GCGCGGCT ATCC AGGCACGC ATAATCTTAGCGTTG CJA_3167 3768972 - 3768235 - | hypothetical protein CJA_3168 3769077 - 3769241 + | hypothetical protein TERM 4863 3769397 - 3769412 + G 77 -8.2 -4.04206 | CGGCCTGCTCGACGA GGGCGC CACC GTGCCC TTTATCTCCCGCTAC TERM 4864 3770350 - 3770295 - g 70 -4.8 -4.56597 | gap 4, overlap 3770296 CCCGCCGGGCAAAAA GCGACTATCG-G-CCTTGAC-CCGG-GC ATGC GCACCGGTGTCAAGGTCGCGGTGGTCGA TGCCACCGGTAAGGT TERM 4865 3771074 - 3771055 - g 74 -2.7 -5.00616 | overlap 3771056 CGGTGGTGGAAAAAA TCGCGCA GAAAAA CGCGCGT GAAATCAAAGGCCTC TERM 4866 3771191 - 3771215 + G 86 -12.7 -3.53012 | opp_overlap 3771192 3771193, overlap 3771192 CAAGGAACTGGACAA ACCCGGGCGCG ACC CGCGCCCGGAA TTTAAAACCGCCCAA TERM 4867 3771192 - 3771214 + G 100 -16.2 -2.71712 | opp_overlap 3771192 3771193, overlap 3771191 AAGGAACTGGACAAA CCCGGGCGCG ACC CGCGCCCGGA ATTTAAAACCGCCCA TERM 4868 3771214 - 3771192 - g 100 -18.4 -3.93638 | opp_overlap 3771192 3771191, overlap 3771193 AAGGAACTGGACAAA CCCGGGCGCG ACC CGCGCCCGGA ATTTAAAACCGCCCA TERM 4869 3771213 - 3771193 - g 100 -19.7 -2.95459 | opp_overlap 3771192 3771191, overlap 3771192 AGGAACTGGACAAAC CCGGGCGCG ACC CGCGCCCGG AATTTAAAACCGCCC TERM 4870 3771334 - 3771355 + G 71 -10.9 -2.88249 | opp_overlap 3771330 TTGTGGACATAGGCG TGCATCAGG ATGG CCTGGTGCA TATCTCCGCCCTGTC CJA_3169 3769308 - 3771638 + | S1 RNA binding domain protein TERM 4871 3771705 - 3771666 - f 93 -12.8 -3.76224 | gap 1, opp_overlap 3771680 TCTGTATTTACTAAA GCCCCCAAGGAATA-CGGC CAT GCCGTTATACCGAGGGGGC AGGCTTTAACCGATA CJA_3170 3771798 - 3772619 + | orotidine 5'-phosphate decarboxylase TERM 4872 3772677 - 3772699 + F 83 -9 -4.33819 | opp_overlap 3772679, overlap 3772678 3772679 GCCAGGAGGCCCACA AACGCCCGGT AAT ACCGGGCGAA TTTCTTATCCATAAT TERM 4873 3772678 - 3772698 + F 81 -12.5 -3.19568 | opp_overlap 3772679, overlap 3772677 3772679 CCAGGAGGCCCACAA ACGCCCGGT AAT ACCGGGCGA ATTTCTTATCCATAA TERM 4874 3772697 - 3772679 - f 100 -16 -3.88291 | opp_overlap 3772678 3772677 3772679 CAGGAGGCCCACAAA CGCCCGGT AAT ACCGGGCG AATTTCTTATCCATA TERM 4875 3772679 - 3772697 + F 90 -16 -2.51259 | opp_overlap 3772679, overlap 3772678 3772677 CAGGAGGCCCACAAA CGCCCGGT AAT ACCGGGCG AATTTCTTATCCATA phnA 3772730 - 3773068 + | alkylphosphonate utilization operon protein PhnA TERM 4876 3773077 - 3773106 + T 100 -15.9 -5.20216 | opp_overlap 3773080 AGCCTAAAGCCCGAA CAATAGCTCACCA GGTT TGGTGGGCTATTG TTTTTTAATGCTGTG TERM 4877 3773103 - 3773080 - T 79 -9.6 -3.66772 | opp_overlap 3773077 CTAAAGCCCGAACAA TAGCTCACCA GGTT TGGTGGGCTA TTGTTTTTTAATGCT CJA_3172 3773296 - 3773111 - | hypothetical protein CJA_3173 3775636 - 3773297 - | putative lipoprotein TERM 4878 3775684 - 3775657 - RH 73 -10.4 -3.05384 | opp_overlap 3775653 TTTCCCCTTATGTAA TGGGCGCCGCTG CAAG CGGCGGCACCCG TGAATATTGCAGCGC TERM 4879 3775696 - 3775722 + rH 84 -10.7 -3.91352 | CCCGTGAATATTGCA GCGCGCGGCGG GCAGG CCACCGGGCGC TTTCCTTAAGGCTGT CJA_3174 3778001 - 3775728 - | putative arylsulfatase TERM 4880 3776408 - 3776389 - GH 72 -10.7 -2.78463 | overlap 3776391 AGGTTGTTGATCACA CAGGGGC CGTTGC GCCCCTG GTCGAGCTGGATATT TERM 4881 3777380 - 3777403 + gH 100 -16.7 -2.64616 | CGCAGGAATAGGTGT CCGCCGGGG CGATAC CCCCGGCGG TGGTGTCGATGGAAG CJA_3175 3777876 - 3777986 + | hypothetical protein CJA_3176 3780280 - 3778004 - | tetratricopeptide repeat domain protein TERM 4882 3778137 - 3778185 + g 77 -12.4 -2.75521 | overlap 3778136 3778144 CGCAATGGCCGGCGG GCGGGCCGCCGCTGCAACTGCT CGCGC AGCAATTGCAGTGCCTGTTCGC GTTTGCCGGTGTCGT TERM 4883 3779477 - 3779505 + g 100 -14.5 -4.1523 | GGGATCGCCCAGCGG CGTGCGGCGGCTG TGG CAGCGGCCGCAGG TTTCTATCTGCTGCG TERM 4884 3779992 - 3779975 - G 86 -6.9 -5.00616 | GCCCTGGCGAAAAAA GACCGTG GTTT CGCGGTC GCTGGTCAAAGTGAT TERM 4885 3780458 - 3780435 - R 84 -14 -2.78384 | CCCGGGCGCAGCACA GGCATACCAT ATTC ATGGTATGCC TGGGTCGGCCCTAGC CJA_3177 3782265 - 3780469 - | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein TERM 4886 3781956 - 3781908 - G 75 -11.7 -3.01712 | gap 1, overlap 3781890 3781887 CGCCCGCCTGCAACA GCCAGGCTGGCAGCG-GCACCA GCGCCG TGGTGCCCGACGCCAGCCCGAT CATGGTGGTGCGCAG CJA_3178 3782942 - 3782265 - | response regulator CJA_3179 3783600 - 3783103 - | hypothetical protein CJA_3180 3783995 - 3783660 - | hypothetical protein TERM 4887 3784172 - 3784136 - R 83 -10.8 -3.6914 | opp_overlap 3784140, overlap 3784137 3784142 AAGGCTAAGAGATAA CGAACACTCGCTCCCG TATAC CGGGGGCGAGCATTCC GTATGGCTAGGCACC TERM 4888 3784171 - 3784137 - R 87 -14.3 -2.80761 | opp_overlap 3784140, overlap 3784136 3784142 AGGCTAAGAGATAAC GAACACTCGCTCCCG TATAC CGGGGGCGAGCATTC CGTATGGCTAGGCAC TERM 4889 3784166 - 3784142 - R 85 -12.8 -3.33696 | opp_overlap 3784140, overlap 3784137 3784136 AAGAGATAACGAACA CTCGCTCCCG TATAC CGGGGGCGAG CATTCCGTATGGCTA CJA_3181 3784342 - 3784211 - | hypothetical protein CJA_3182 3785179 - 3784598 - | putative PAP2 superfamily TERM 4890 3784917 - 3784906 - G 87 -4.4 -5.19879 | CGTCAAACAGAAAAA GAAC CAAA GTTC CAATAAACAAAAATA TERM 4891 3785172 - 3785160 - G 74 -3.3 -4.9138 | opp_overlap 3785160 ACGATTGAAATAAAA CGAGC GAT GCTGG TTATCATTTTATGCC TERM 4892 3785298 - 3785316 + G 80 -11.8 -3.31144 | GCCTCTTACGCCATA TGCGCATA TTG TATGCGCA TTGTCCGCATAGAGG ccdA 3785183 - 3785584 + | CcdB antidote CcdA CJA_3184 3788191 - 3786635 - | Transposase IS4 family TERM 4893 3787098 - 3787085 - G 85 -6.7 -4.87389 | opp_overlap 3787092 CAGGTCAAAAATAAA TTCCG AGGC CGGAA TAACGGCTTTTACTC TERM 4894 3787092 - 3787105 + g 70 -5.2 -4.30978 | opp_overlap 3787085 AAAATAAATTCCGAG GCCG GAATAA CGGC TTTTACTCCCTTCAC TERM 4895 3788264 - 3788282 + r 71 -3.7 -4.74504 | overlap 3788265 TTTTCTACAACTTCA ACGCCGC GATAA GCGGTGG TTTTTAAGTTGCACT CJA_3185 3790183 - 3788975 - | putative maturase int 3792839 - 3793810 + | integrase TERM 4896 3794851 - 3794838 - g 76 -9.5 -3.71607 | CCAATACGATTTAAA GCGCG AGGA CGCGC TGCTGACCGAATCCG CJA_3187 3793915 - 3795297 + | Outer membrane efflux protein domain protein TERM 4897 3796111 - 3796128 + G 72 -6.2 -4.43208 | AGGGCGATATTCCCG CGCTGG GGTTGA CCGGCG TTTATTTCCAGGTGT CJA_3188 3795294 - 3796301 + | HlyD family secretion protein TERM 4898 3796417 - 3796438 + G 70 -7.3 -4.07885 | gap 1 GATTCCCTGGCTGGC CATGGC-GCT GCT GGCAGCCATG TTTTACAGCGCCGTG CJA_3189 3796286 - 3797482 + | hypothetical protein TERM 4899 3797837 - 3797865 + G 74 -11.1 -3.14132 | gap 1, overlap 3797827 3797836 TGCGCGGCAATCCGG GGC-CCATTGCC CTTTAC GGCAATGGCGCC TTCCTCGGGCGAACC TERM 4900 3797959 - 3797978 + G 73 -11.4 -2.77043 | gap 1, overlap 3797958 CAGGCCGCCTTTGCC GGC-GCGGC CAC GCCGCCGCC CTTTCACCTGGTACA CJA_3190 3797479 - 3798621 + | ABC-2 type transporter domain protein CJA_3191 3798618 - 3799157 + | hypothetical protein TERM 4901 3799226 - 3799238 + G 71 -3.3 -4.74706 | CAGGAACAACACGAT GAACC CAT GGATC TTTTTAAGTATTGCC TERM 4902 3799273 - 3799300 + G 74 -6.2 -4.56775 | gap 1 TCGCGGAAGTGATTG CCACCTC-GGCCT TGA AGGCCAGCGATGG TTTTTCCAACACCCT qacG 3799224 - 3799556 + | quaternary ammonium compound resistance protein TERM 4903 3801630 - 3801646 + G 70 -3.5 -4.65263 | opp_overlap 3801612, overlap 3801626 GTTTATCGAGCGATA CCCGGAC CAG GGCCAGG TTTCTTTTCAACGGT TERM 4904 3802619 - 3802594 - g 90 -7.4 -4.79174 | ATGTAAGGAAGAAAA CCCCGCGGAG TGCCGC CGCCGCGCGG TAAAAATAGAGCTGC CJA_3193 3799751 - 3802669 + | hypothetical protein TERM 4905 3802944 - 3802889 - T 89 -9 -4.64861 | gap 1, opp_overlap 3802889 3802931, overlap 3802885 CCCCGCTAAAACAAA CCCGGTTCG-ATTGCCCTGGCTCATCA GAC TAAGCCGCCAGCGCAACACAAACCGGG TTGTTGTTAACCAGC clpB 3805664 - 3802986 - | ClpB TERM 4906 3804161 - 3804173 + g 81 -6.2 -4.74801 | overlap 3804159 TCATGCGCGCCAGGT CGCC CTTGC GGCG TTTTTCCTCCAATTC TERM 4907 3804642 - 3804665 + g 72 -4.4 -4.62904 | opp_overlap 3804646, overlap 3804645 GACCAGCACCTTCTG GAAACGGCGC TCAA GCGCTGCATC TTTTTCCACGTATTT CJA_3195 3807029 - 3805746 - | putative Macrolide-efflux protein TERM 4908 3806860 - 3806847 - G 71 -2.4 -4.96996 | GCCAAATAAAAGAAA TACC GCCTGG GGTA AACTGGCAGCCGCCA TERM 4909 3806968 - 3806953 - G 91 -5.4 -5.44721 | overlap 3806954 3806956 3806957 ACCACGGTAAAAAAA TTACCC ATCT GGGCAA TCAAACTGCTTACCC CJA_3196 3807813 - 3807058 - | microcystin synthetase associated thioesterase TERM 4910 3807328 - 3807308 - G 93 -6 -5.28983 | overlap 3807309 TCCAAAATAGAAAAA TCCGCCCG CAATC CGGGCAGT AATAACTGCATAACA TERM 4911 3807327 - 3807309 - G 76 -9.5 -3.75763 | overlap 3807308 CCAAAATAGAAAAAT CCGCCCG CAATC CGGGCAG TAATAACTGCATAAC TERM 4912 3807493 - 3807481 - G 72 -5.5 -4.55383 | AATGGAGAAAAACAA TCCCG GCA CAGGA AACTCAAGCGCCTGT gt1C 3809090 - 3807816 - | glycosyl transferase, putative, gt1C TERM 4913 3808806 - 3808826 + g 88 -8.3 -4.60487 | opp_overlap 3808821 GCTTAAACTGCGGTG CCCACCT ACGTCAA AGGTGGG TTTTTCACCCTGCTC TERM 4914 3809101 - 3809065 - G 86 -12.4 -3.5032 | gap 1, overlap 3809063 3809066 GGTTGAGATGAAATA GGTGGTCGAGGCTTACC TGGC GGCAAGCCTCGA-CAGC GCTGTCAAAAAATTA TERM 4915 3809101 - 3809066 - G 85 -14 -2.69871 | overlap 3809065 3809063 GTTGAGATGAAATAG GTGGTCGAGGCTTACC TGGC GGCAAGCCTCGACAGC GCTGTCAAAAAATTA mxaD 3816904 - 3809114 - | MxaD TERM 4916 3809934 - 3809908 - G 73 -3.7 -4.77759 | overlap 3809910 ACAACTTATCAAAAA CTGCAGATAAA TGATG TTTCTCTGCCG GCAAAATATGGCTTG TERM 4917 3810541 - 3810553 + g 77 -6.2 -4.70772 | CCAGTTTACGCTCGC GCCC CTGGT GGGC TTTTATTGAGTCTAT TERM 4918 3814783 - 3814803 + g 77 -3.3 -5.07652 | overlap 3814785 TAATGGCATCCTCGC TATTGATTG CCG CAATCGAAA TTTTATTTTCCACCC TERM 4919 3815482 - 3815462 - G 75 -4.7 -4.86621 | gap 1, opp_overlap 3815473 AGCCTCAACCAAAAA CTC-CCGG TATCGC CCGGCGAG GGCTTTCAATGCAGG CJA_3199 3817717 - 3817502 - | hypothetical protein TERM 4920 3817741 - 3817719 - gH 70 -9.8 -3.05054 | overlap 3817718 3817735 ACCTGAAACAACAAC TGCCGGCATC ATC GAAGCCGACA TACCATCAGGATGTG CJA_3200 3817334 - 3818713 + | hypothetical protein TERM 4921 3818723 - 3818768 + FH 100 -19.3 -4.98758 | gap 1, opp_overlap 3818718 3818717, overlap 3818724 3818725 AAGTAACAATTCCAC T-TCTCACAGGGAGTATCCAGT ACG ACTGGATACTCCCTGTGGGCTA TTTTTATAACTTTTT TERM 4922 3818724 - 3818766 + FH 100 -24.4 -4.08693 | opp_overlap 3818718 3818717, overlap 3818723 3818725 AGTAACAATTCCACT TCTCACAGGGAGTATCCAGT ACG ACTGGATACTCCCTGTGGGC TATTTTTATAACTTT TERM 4923 3818725 - 3818765 + FH 100 -27.9 -3.03589 | opp_overlap 3818718 3818717, overlap 3818724 3818723 GTAACAATTCCACTT CTCACAGGGAGTATCCAGT ACG ACTGGATACTCCCTGTGGG CTATTTTTATAACTT TERM 4924 3819301 - 3819283 - g 74 -3 -5.00884 | opp_overlap 3819286, overlap 3819285 AGGCTGCTCAAAAAA TGGCTTCC CCA GGAGGGCA AGTTGGATTTTGCCG CJA_3201 3818800 - 3820278 + | hypothetical protein CJA_3202 3820416 - 3821171 + | hypothetical protein CJA_3203 3821327 - 3822055 + | hypothetical protein CJA_3204 3822900 - 3822133 - | YfiH TERM 4925 3822585 - 3822607 + g 80 -12 -3.2794 | AATCCGCCGTCATGA CCAGGCAGGA CTG TCCTGGCTGG TTGCTATAACTGCCA TERM 4926 3822853 - 3822869 + g 76 -10.8 -3.29263 | GCGGATATTGGCTGG CGCCGG CCAGT CCGGCG TTATCCACAGGCTAT TERM 4927 3822915 - 3822947 + r 86 -11.9 -3.55071 | opp_overlap 3822910 CGATAGTTAATCTTC CTGCTGGTAGCCCTG GTC CAAGGCATCCAGCAG TTTGCGAAAGTCTGC CJA_3205 3823868 - 3822906 - | pseudouridine synthase, RluA family subfamily TERM 4928 3824530 - 3824514 - g 79 -3.6 -5.07567 | GCAGATGCCAAAAAA CGCATG TTATT CCTGCG CAACCTGCTGGCACG CJA_3206 3823947 - 3824930 + | competence protein ComL TERM 4929 3824944 - 3824959 + T 100 -11.8 -5.45652 | opp_overlap 3824944 AACGACTGGATAAAA GGCCGC CCAC GCGGCC TTTTTTATTAGGCGT TERM 4930 3824959 - 3824944 - T 100 -11.8 -4.41206 | opp_overlap 3824944 AACGACTGGATAAAA GGCCGC CCAC GCGGCC TTTTTTATTAGGCGT adgA 3826663 - 3824981 - | glutamine-dependent NAD+ synthetase signal peptide protein TERM 4931 3825064 - 3825077 + g 76 -9.5 -3.77119 | TACGTACGCCAATCG GCGCC TGGC GGCGC TTGTATTCATTGATA TERM 4932 3827690 - 3827704 + G 70 -5.6 -4.41494 | opp_overlap 3827690 3827688 TGGAGCCCAATAATA CCAGCG AAA CCCTGG TTTTCCTTGAGGATG pilS 3826810 - 3828480 + | sensor kinase TERM 4933 3828854 - 3828816 - g 95 -12.4 -4.14243 | opp_overlap 3828815 GATTTCATCTCAAAA CCTGTTGACCTGGCAACA TTA CGCCGCCTGGTCAACACG GCTATTGAGTCAGCC TERM 4934 3829291 - 3829266 - g 100 -15.5 -4.7497 | gap 1 GCCATCCAGGAAAAA TCTGTCCGCCCC ATA GGGGCGG-CAGA AGAAATAACCACCGA pilR 3828504 - 3829907 + | PilR CJA_3210 3830475 - 3830044 - | type IV pilin CJA_3211 3834924 - 3830476 - | putative fimbrial protein TERM 4935 3831913 - 3831884 - G 74 -2.7 -5.00884 | gap 1, overlap 3831886 ACGTTCTCCAAAAAA GTCCGGTAGC-TAG CAC CTGCGCTGCCGGGC AATAAATGATATTGG TERM 4936 3832727 - 3832715 - G 70 -5.5 -4.36931 | GAATGGACATTAAAA CCACC AAC GGTAG TGCCACTGATCACAT TERM 4937 3833905 - 3833915 + g 75 -5.4 -4.72029 | opp_overlap 3833905 TGATCCCGTCATTAA TCCA AAG TGGA TTTTATTGGCTTCAC pilW 3836595 - 3835546 - | type 4 fimbrial biogenesis protein PilW fimT 3837836 - 3838366 + | pre-pilin like leader sequence ispH 3839314 - 3838370 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CJA_3215 3839781 - 3839317 - | peptidyl-prolyl cis-trans isomerase, FKBP-type TERM 4938 3839436 - 3839447 + g 84 -3.6 -5.28176 | AACGACTCACAACGC CCGG CAAT TCGG TTTTTTGTGCATCGG lspA 3840271 - 3839759 - | signal peptidase II TERM 4939 3840311 - 3840291 - R 93 -12.5 -3.68351 | GCCCCATCAGGCAAA GGAGCGGGT TTC ACCCGCACC GTCCACGTTTTCAAC ileS 3843089 - 3840282 - | isoleucyl-tRNA synthetase TERM 4940 3840400 - 3840413 + g 74 -3.1 -5.00884 | overlap 3840376 CAGCAGCGCTCGCAC TTGGT ATAC ACCGA TTTTTTCACGGCAAT TERM 4941 3840852 - 3840890 + g 72 -8.8 -3.81951 | overlap 3840854 3840855 TGTCTGGGCTGAGCG GCGCGCCAGTGCATCG GCTTTAA CGGTGTACTGGCGATC TTTAATGATATCCAG TERM 4942 3840854 - 3840888 + g 74 -10 -3.49482 | overlap 3840852 3840855 TCTGGGCTGAGCGGC GCGCCAGTGCATCG GCTTTAA CGGTGTACTGGCGA TCTTTAATGATATCC TERM 4943 3840855 - 3840887 + g 81 -13.5 -2.69207 | overlap 3840854 3840852 CTGGGCTGAGCGGCG CGCCAGTGCATCG GCTTTAA CGGTGTACTGGCG ATCTTTAATGATATC TERM 4944 3841072 - 3841026 - G 73 -11.8 -2.57211 | gap 2, overlap 3841025 AGTTTGTCCCACAAT CCAGCGATCCAGTTGCACCATG TTATC CATAG-GCA-CCAGATCGCTGG CAGGGTTAAAGCCCA TERM 4945 3841621 - 3841639 + g 70 -4.4 -4.55295 | opp_overlap 3841612, overlap 3841622 ATTAAACGCGCGGTG TCCGGGTG TAG CTCCTGGG TTTCTTTATGCACAA TERM 4946 3841781 - 3841800 + g 100 -13.6 -4.78107 | CCTCCACCGATTTGG CCACCTGC TCGC GCAGGTGG TTTTTGCTCATACTC TERM 4947 3841897 - 3841911 + g 100 -7.1 -5.47821 | TGGGTGATCTTACCC TGCGC CAGGA GCGCA TTTTTTTCGATCAAT ribF 3844120 - 3843086 - | riboflavin biosynthesis protein RibF mviN 3845796 - 3844192 - | integral membrane protein MviN CJA_3220 3845821 - 3846270 + | hypothetical protein TERM 4948 3846363 - 3846375 + F 72 -5.5 -4.50159 | overlap 3846364 TTTTACAAATCACTG TCACC ACC GGTGG TTTGTTTGCGTTACG CJA_3221 3846669 - 3847550 + | hypothetical protein TERM 4949 3847595 - 3847565 - T 79 -7.6 -4.41047 | gap 1, opp_overlap 3847593 AGCCCCCAACCAAAA CCACAAGC-CGGG TTAACG CTCGAGCTTGTGG CCGCTTCGGCAATGG CJA_3222 3848215 - 3847577 - | hypothetical protein CJA_3223 3850208 - 3848253 - | Phytanoyl-CoA dioxygenase (PhyH) family TERM 4950 3848685 - 3848666 - G 84 -7.8 -4.60255 | ACAACTGCTTAAAAA TAGCCTGC AACC GCTGGCTA CTGCGCGCCGCTTCC TERM 4951 3849484 - 3849511 + g 78 -9 -3.91897 | opp_overlap 3849459 3849480 3849485, overlap 3849485 CCCTGCAAACACGAC AGGTCACCGCGC TGGA GCGCTGTGGCCG TTTGTCGCTCCAGGG TERM 4952 3849485 - 3849510 + g 78 -12.5 -2.94924 | opp_overlap 3849459 3849480 3849485, overlap 3849484 CCTGCAAACACGACA GGTCACCGCGC TGGA GCGCTGTGGCC GTTTGTCGCTCCAGG TERM 4953 3850504 - 3850516 + G 95 -10.5 -4.57353 | GGCCAATGTGCAATT GGGGC CGC GCCCC TTTTATCTGGTCAAC TERM 4954 3850611 - 3850596 - g 85 -3.3 -5.40072 | GGCCCTTCAAAAAAA CCAAT TTCTCC ATTGG CCATCGCGGCGCACC TERM 4955 3851515 - 3851494 - g 72 -4.3 -4.60258 | TTACCAAACAATAAA CCCAGCCAT CAAA AAGGATGGG GATATGATCGAGGTA CJA_3224 3850352 - 3851626 + | Glycerophosphoryl diester phosphodiesterase family CJA_3225 3851760 - 3852410 + | probable transcriptional regulator arsR family TERM 4956 3852951 - 3852977 + G 76 -8.1 -4.22214 | gap 1 AAATGCGCGATGGTG TTGCCCACGCAG TGGA TTG-GTGGGCAA TTATTTTCAATCCCT qxtA 3852464 - 3853819 + | quinol oxidase, subunit I TERM 4957 3854052 - 3854087 + G 71 -2.5 -4.89521 | gap 1, overlap 3854055 TACTGGGCATCGGTA TCCTGCTGATCGC-GT TCCCC ACGGCGCACAGCATGA TTTTATTTCACCTGT CJA_3227 3853829 - 3854848 + | cytochrome oxidase subunit II superfamily CJA_3228 3855461 - 3854886 - | hypothetical protein CJA_3229 3856966 - 3856502 - | hypothetical protein CJA_3230 3857139 - 3857044 - | hypothetical protein CJA_3232 3857323 - 3857424 + | hypothetical protein CJA_3231 3858731 - 3857409 - | PepSY-associated TM helix family TERM 4958 3857921 - 3857941 + g 72 -11.1 -3.05463 | ATTGCAATGCCTGCG CCCTTGCCA GGA TGGCGGGGG TTAAATCAAACACAT TERM 4959 3858152 - 3858102 - G 74 -2.6 -5.1356 | gap 3, overlap 3858104 GGTCACCAATAAAAA TAGCGCGAGC-GCA-GCAATC-CAG ACTC CGGTGACCGCGTGCAGGTCGCGCCA GAAAACACGGCTGCC TERM 4960 3858774 - 3858792 + r 82 -13.1 -2.81089 | opp_overlap 3858774, overlap 3858771 TCGTAAAATAACAAA CGCCCGG TAACT CCGGGCG TCATCTGTTTAGGCT TERM 4961 3858792 - 3858774 - R 100 -13.1 -4.67697 | opp_overlap 3858774 3858771 TCGTAAAATAACAAA CGCCCGG TAACT CCGGGCG TCATCTGTTTAGGCT CJA_3233 3861072 - 3858811 - | TonB-dependent receptor protein TERM 4962 3860391 - 3860381 - G 81 -8.2 -4.36914 | overlap 3860363 TGGTTTTTCATAAAA CCGG TAA CCGG GATGGCATTGGCAAA CJA_3234 3862644 - 3861238 - | transporter, solute:sodium symporter (SSS) family TERM 4963 3861358 - 3861326 - G 78 -5.7 -4.86385 | overlap 3861327 3861328 3861330 AGCCCGAAAAACAAA TC-GACACTGACACC GGCCA GGTG-CAGTGCCAGA ACCGCGCCACAGCCA TERM 4964 3861605 - 3861593 - G 76 -7.7 -4.15788 | AATCGCGGCAACAAA TCCTG GGA CAGGA AAGCCGAGCAGCTCA TERM 4965 3862552 - 3862516 - G 95 -14.3 -3.3676 | overlap 3862517 GGTAACAGCGGACAA GCCGGCCAGCCAGGGCG ACA CGCTGTGGCTGGCCAGG TAGTAATCCTGCTGG TERM 4966 3862551 - 3862517 - G 100 -17.8 -2.61735 | overlap 3862516 GTAACAGCGGACAAG CCGGCCAGCCAGGGCG ACA CGCTGTGGCTGGCCAG GTAGTAATCCTGCTG CJA_3235 3862859 - 3862665 - | hypothetical protein ectC 3863354 - 3862959 - | Ectoine synthase ectB 3864653 - 3863373 - | diaminobutyrate--2-oxoglutarate aminotransferase TERM 4967 3864401 - 3864381 - G 72 -9.8 -3.36273 | CGGCGTTAATATCAA TTCCTGCA GGCGT TGCAGGAA GTTAGCCTTGGCCCG CJA_3238 3865382 - 3864783 - | L-2,4-diaminobutyric acid acetyltransferase TERM 4968 3865002 - 3865048 + g 72 -6.5 -4.36914 | gap 1, opp_overlap 3865029, overlap 3865002 GCTTTCAAACAGGGC CCAGGATGCCTGGTTATCAGCA GTAA TGCTGGTCGCCAGGCG-CAGGG TTTTCTCGCAGGAGG TERM 4969 3865524 - 3865510 - g 71 -2.9 -4.77173 | opp_overlap 3865510 CCTGCAGAAAAGAAA CAAAA TAAAC TTTTG TTATAAAAACGACCA TERM 4970 3865567 - 3865550 - g 95 -7.1 -5.32882 | opp_overlap 3865550 GACCACCATAAAAAA TACTTTG ACAT CAAAGTA TTTATATAGAATACA TERM 4971 3865550 - 3865567 + G 70 -7.1 -4.05033 | opp_overlap 3865550 GACCACCATAAAAAA TACTTTG ACAT CAAAGTA TTTATATAGAATACA CJA_3239 3865409 - 3865576 + | hypothetical protein CJA_3240 3865625 - 3866164 + | transcriptional regulator, MarR family TERM 4972 3866209 - 3866188 - T 100 -11.5 -4.88736 | GAGCACGCATAAAAA GGGGGGCGA TTGG TAGCCCCCC ACATCAAGTTTAAAA CJA_3241 3867317 - 3866892 - | hypothetical protein TERM 4973 3867433 - 3867410 - R 85 -12.4 -3.35996 | opp_overlap 3867411, overlap 3867411 TAGTTCTACTCATAA GGCGAGCCTC ATTT GAGGCTCGCT TTTTTTATGATTCGG TERM 4974 3867432 - 3867411 - R 90 -15.9 -2.61383 | opp_overlap 3867411, overlap 3867410 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG TERM 4975 3867411 - 3867432 + r 100 -15.9 -5.71983 | opp_overlap 3867411 3867410 AGTTCTACTCATAAG GCGAGCCTC ATTT GAGGCTCGC TTTTTTTATGATTCG CJA_3242 3868555 - 3867404 - | ISCja2, transposase CJA_3243 3871384 - 3868712 - | mannosidase-like protein TERM 4976 3870931 - 3870905 - G 75 -5.3 -4.60889 | overlap 3870895 AATCACTGGCAAAAA CTTACCAAA CCAGTTTTC TTTGGTAAG ACGCAACAACTCATC TERM 4977 3871230 - 3871253 + g 79 -12.5 -3.05844 | ATCACCGGAGCATTT TCCGATGGC CTGGCA GCCATCGGA TCTTCCACTACCACA CJA_3244 3874588 - 3871436 - | TonB-dependent receptor TERM 4978 3872793 - 3872817 + g 81 -10.1 -3.91897 | opp_overlap 3872791 TTGTCTTGCAAACCG CCGATATCAAT TAA ATTGCTATCGG TTTCTGAATAGACAA TERM 4979 3874065 - 3874077 + g 74 -7.7 -4.13767 | CCTTCCTGCAGGTTA CTTGG GTC CCAAG TTTTCAAGTCAACCA CJA_3245 3874948 - 3874667 - | hypothetical protein TERM 4980 3875279 - 3875256 - R 100 -15.4 -4.37092 | opp_overlap 3875261, overlap 3875261 AGGGCCCCCATAAAA CAAAACCCGG CGAG CCGGGTTTTG CTTGGACCTATACGC TERM 4981 3875274 - 3875261 - R 100 -9.5 -5.18371 | opp_overlap 3875261, overlap 3875256 CCCCATAAAACAAAA CCCGG CGAG CCGGG TTTTGCTTGGACCTA TERM 4982 3875261 - 3875274 + r 90 -9.5 -4.41494 | opp_overlap 3875261 3875256 CCCCATAAAACAAAA CCCGG CGAG CCGGG TTTTGCTTGGACCTA CJA_3246 3878306 - 3875307 - | TonB-dependent receptor TERM 4983 3877101 - 3877080 - G 74 -10.9 -3.16944 | gap 1, overlap 3877078 AGCATCAATCCAATA CCAGGCAGGG GTG CCCTGC-TGG AAAGTCGCCTGCTCA TERM 4984 3878632 - 3878612 - R 95 -2.7 -6.07374 | opp_overlap 3878615, overlap 3878615 ACAAAAAATAAAAAA TACTTTATT TTC AATAAATTA CTGAAAAACAGATCA TERM 4985 3878836 - 3878787 - R 100 -19.6 -2.7224 | gap 1, opp_overlap 3878801, overlap 3878797 3878806 GCACAGGACATAGCA GCAGGAGCAATTGACCAAACCCG GGTAA CGGATTTGGTCAATTGC-CCTGG AAGGGCAAGGCAACC TERM 4986 3878827 - 3878797 - R 90 -14.9 -3.23692 | opp_overlap 3878801, overlap 3878787 3878806 TAGCAGCAGGAGCAA TTGACCAAACCCG GGTAA CGGATTTGGTCAA TTGCCCTGGAAGGGC amy13H 3881466 - 3878851 - | alpha-amylase, putative, amy13H TERM 4987 3878933 - 3878921 - G 71 -10.5 -2.9348 | CCGAAAGTCCACATA CCCGG CTC CCGGG TTAAACCGCGGTACG TERM 4988 3880964 - 3880946 - G 81 -4.6 -5.16572 | ACGTAACTGAAAAAA TTGCCAAC GTG GTTAACAA CAACATCCTGGATCA TERM 4989 3883669 - 3883656 - g 73 -3.8 -4.79352 | TGATTGATAACAAAA CCAG TTATTT CTGG GGCGATTCACTCCTG agd31B 3881837 - 3884287 + | alpha-glucosidase, putative, adg31B TERM 4990 3884350 - 3884328 - T 100 -20.6 -5.4833 | opp_overlap 3884328 TGACCCAATAAAAAA GCCCCCGCCA TGA TGGCGGGGGC TTTTTTATGCTACCA TERM 4991 3884328 - 3884350 + T 100 -20.6 -5.31275 | opp_overlap 3884328 TGACCCAATAAAAAA GCCCCCGCCA TGA TGGCGGGGGC TTTTTTATGCTACCA cgl13A 3886092 - 3884395 - | cyclomaltodextrin glucanotransferase, putative, cgt13A TERM 4992 3884757 - 3884779 + g 72 -5.6 -4.58283 | overlap 3884758 3884761 CATGGGCAATGCGGG TCAGGTTGTT GTG AACAACATGG TTTTTAGCGGCATTG TERM 4993 3885052 - 3885033 - G 71 -2.8 -4.76963 | opp_overlap 3885033 GGAGATAAGACAAAA TGGAAGCA TAGT CGCTTTCA TCATTCTCAAACACA TERM 4994 3885331 - 3885311 - G 74 -6.2 -4.48221 | opp_overlap 3885311 3885314 TAGGAATTCACAAAA TAATCCAG GACTT CCGGATTA TTCTCATTGATGTCC TERM 4995 3886143 - 3886130 - R 85 -6.7 -5.18357 | CAATTTATTAAAAAA CGAGA TCCT TCTCG CCCCTTGCTCCCTGC CJA_3250 3887368 - 3886169 - | 3-dehydroquinate synthase TERM 4996 3887233 - 3887246 + g 84 -8.1 -4.62069 | opp_overlap 3887232 TGTTGCCAACCAGAT CGCTG AGCA CAGCG TTTTTCACATCAAAG CJA_3251 3888076 - 3887375 - | Phytanoyl-CoA dioxygenase (PhyH) superfamily pbg4A 3889359 - 3888109 - | 6-phospho-beta-glucosidase, putative, pbg4A TERM 4997 3888233 - 3888270 + g 70 -6.3 -4.24422 | gap 1, opp_overlap 3888232 3888230 3888245 3888246, overlap 3888245 3888246 ACACCATCAAAATCC CGGGCTAAAATAGCGCGT AAC ATGCGC-GTTTCAGCCAG TTTCATTTGTTGTAC CJA_3253 3890341 - 3889352 - | putative glucokinase TERM 4998 3890375 - 3890392 + r 78 -12.7 -2.54812 | opp_overlap 3890373 3890374 3890371, overlap 3890374 AAAATATTCAATATG GCCCTGG CTTA CCAGGGC ATTGCTAATGTGGGT glgC 3891412 - 3890354 - | Glucose-1-phosphate adenylyltransferase TERM 4999 3890540 - 3890524 - G 72 -10.1 -3.40071 | AATCCACACGGATAA CCCGGCT ATC AGCCAGG ACACGATTGCGTTTT gt5B 3893248 - 3891425 - | glycosyl transferase, putative, gt5B TERM 5000 3892156 - 3892146 - G 71 -2.4 -4.99435 | overlap 3892147 3892148 GGGAATAAGGAAAAA TCGG CAG CCGC GGCCATCGCCATCAA TERM 5001 3892308 - 3892287 - G 70 -3.7 -4.67608 | gap 1, overlap 3892288 CAGCGCAAGATAAAA TTGGCCTCGG CAC CCGATGC-AA GCACCTTGGCAATTG TERM 5002 3892468 - 3892452 - G 70 -3.7 -4.59773 | TTCCATGGTGAAAAA TCCTG TTTCAGC CAGGA TTCGGATAGGGCACA TERM 5003 3893045 - 3893034 - G 71 -3 -4.8543 | opp_overlap 3893038 3893038 3893043, overlap 3893023 3893035 3893038 TAAGGCGGATAAAAA GTAT CCGG ATAC CTATCCAGGTATTCA CJA_3256 3894933 - 3893386 - | hypothetical protein TERM 5004 3893795 - 3893806 + g 74 -2.2 -5.1101 | gap 1, overlap 3893795 GAAAAATAATCCAGT CC-GC GGT GCAGG TTTTTTAAGTCCTGC CJA_3257 3896228 - 3894930 - | homolog of 4-aminobutyrate aminotransferase GabT TERM 5005 3895084 - 3895058 - G 93 -14.4 -2.9914 | TACCGCCCACACACA CCCGCGCCCC CAGCGCC AGGGCGCGGG TATAAAACGCCTTGG TERM 5006 3895927 - 3895914 - G 85 -3.1 -5.40474 | ACCGGTTGAAAAAAA TGCAA AGCG CTGCA GCTCATCCGGAAAGC CJA_3258 3896557 - 3896225 - | hypothetical protein CJA_3259 3897114 - 3896581 - | hypothetical protein CJA_3260 3898903 - 3897206 - | ABC transporter, ATP-binding protein TERM 5007 3898603 - 3898617 + g 70 -7.1 -4.11216 | overlap 3898581 TGCCGGGTGCCGATG CCCTG GCATG CAGGG TTTTGCCCATCACAC CJA_3261 3900711 - 3898900 - | ABC transporter domain protein TERM 5008 3899017 - 3899007 - G 70 -5.4 -4.3534 | overlap 3898982 3899008 3899010 GGCTAATCACCAAAA CGAT GGC ATCG GTTAACGCCAGCAGC TERM 5009 3899141 - 3899129 - G 79 -4.1 -5.09895 | overlap 3899133 TAGGCACGCAAAAAA CACAG GCG CTGTA TCTCACCACCGGATA TERM 5010 3899887 - 3899897 + g 70 -6.8 -4.04206 | CACCACAAAATATTC CTGC AAC GCAG TTTGTATCCGCCTGA CJA_3262 3901649 - 3900708 - | kinase, pfkB family TERM 5011 3901519 - 3901529 + g 77 -3.2 -5.02476 | CCCGTACCGCCGACA GCTT TAT AGGC TTTTTTGGCCCATAT TERM 5012 3903472 - 3903430 - g 72 -9.8 -3.4072 | CAGGCGGCAGCACAA GGTGTTTACCCGCGGCAG TTTTTCC CTGCTGCAGGACAACACC GCAGGCCCCGGAATA cgt13B 3902006 - 3904636 + | cyclomaltodextrin glucanotransferase, putative, cgt13B TERM 5013 3904701 - 3904659 - T 81 -13.5 -2.71731 | gap 1, opp_overlap 3904658 CTCAGCCGGGAATTA GCGCAGTACCGGCAACCTGC CCAC GCAGGTTGCCGGT-CTGAAA ATGGATTACAGGACT CJA_3264 3905255 - 3904707 - | putative glutathione peroxidase TERM 5014 3905372 - 3905343 - R 71 -10 -3.24597 | opp_overlap 3905344, overlap 3905341 3905344 AATGGTTAAGGAATA GCGAATCGGCAG GATTTT CTGCCGATCCGT TTAATACCAGAAGGA TERM 5015 3905344 - 3905371 + r 93 -12 -3.72576 | opp_overlap 3905343 3905341 3905344 ATGGTTAAGGAATAG CGAATCGGCAGG ATTT TCTGCCGATCCG TTTAATACCAGAAGG TERM 5016 3905371 - 3905344 - R 80 -13.5 -2.54276 | opp_overlap 3905344, overlap 3905343 3905341 ATGGTTAAGGAATAG CGAATCGGCAG GATTTT CTGCCGATCCG TTTAATACCAGAAGG CJA_3265 3906536 - 3905373 - | hypothetical protein TERM 5017 3906178 - 3906159 - G 74 -2.1 -5.15634 | opp_overlap 3906166 CAGGTCACCAAAAAA GCTCTGG TCGATG CCAAAAC TGTAGGTTTTTGCGT CJA_3266 3906747 - 3906523 - | putative lipoprotein CJA_3267 3907235 - 3906744 - | putative thiol:disulfide interchange protein DsbE CJA_3268 3907134 - 3907286 + | hypothetical protein CJA_3269 3907953 - 3907306 - | hypothetical protein CJA_3270 3908708 - 3907923 - | hypothetical protein CJA_3271 3907908 - 3908666 + | hypothetical protein CJA_3272 3911622 - 3908731 - | hypothetical protein TERM 5018 3909777 - 3909793 + g 72 -6.5 -4.37886 | opp_overlap 3909777 3909780, overlap 3909780 CCATGGGTAAGCACA CCACCTG CGC CAGGTTG TTTTCTGCACAGTAG TERM 5019 3909780 - 3909790 + g 75 -6.8 -4.30995 | opp_overlap 3909780 3909777, overlap 3909777 TGGGTAAGCACACCA CCTG CGC CAGG TTGTTTTCTGCACAG TERM 5020 3910268 - 3910241 - G 82 -7.6 -4.5538 | opp_overlap 3910241, overlap 3910232 3910242 ATAAAACGCACAAAA CGCGCCGGGC GCAATTCT GCCGGACGCG CGGCCAATTCACCCA CJA_3273 3912567 - 3912340 - | hypothetical protein CJA_3274 3912775 - 3914040 + | hypothetical protein TERM 5021 3914080 - 3914098 + G 82 -11.7 -3.47322 | CCCATTGCTTCGCCC GCTGGCG CTGGT CGCCAGC TTACTTGTCGTCGGC TERM 5022 3914165 - 3914190 + G 95 -12.5 -4.2349 | gap 1, opp_overlap 3914161 3914163 3914164 GTCAAACCCAACACC CCGCC-ACCGCC CCC GGCGGGCGGCGG TTTTACCTATAACGG TERM 5023 3915117 - 3915077 - g 84 -11.1 -3.72576 | gap 1 GCCTGGGGCATCAAA CTGGCCGACAACGGCCGC GCCCAG GCGACCG-TGGCGGGCAG CCGCAAGCTCTACGA TERM 5024 3916554 - 3916527 - g 70 -10.4 -3.17723 | opp_overlap 3916523 CCACCGTCAAGGCAA GCTGCGCCGCCG CCCT CGGCAGCGCCGT CATGCTGTTGCAATA CJA_3275 3914042 - 3916570 + | putative lipoprotein TERM 5025 3918001 - 3917984 - g 81 -10.5 -3.57144 | GTGGCGATGTGGAAA CCGCCGG CAGC CCGGCAG CCAATAACGTCAACC CJA_3276 3916591 - 3918180 + | hypothetical protein TERM 5026 3918208 - 3918226 + F 100 -14.6 -5.626 | CCTTGCTAGCGCTCA GCCGGTAC CCT GTACCGGC TTTTTTTATGGCGTG TERM 5027 3918837 - 3918847 + G 81 -8.2 -4.3739 | opp_overlap 3918837 3918836 CACTGGTCAACCAAC CCGG CTA CCGG TTTTGTCCAGACCTG CJA_3277 3918318 - 3919061 + | hypothetical protein TERM 5028 3919417 - 3919405 - g 74 -7.7 -4.0371 | opp_overlap 3919405 CAGGTTTTATAGAAA TGCGA CCT TCGCA TTTTTAACGCTTATT TERM 5029 3919405 - 3919417 + G 84 -7.7 -4.64144 | opp_overlap 3919405 CAGGTTTTATAGAAA TGCGA CCT TCGCA TTTTTAACGCTTATT CJA_3278 3919292 - 3920542 + | transcriptional regulator, AraC family domain protein TERM 5030 3921357 - 3921342 - g 73 -9 -3.66908 | opp_overlap 3921342 3921341 TCCTTGCAAAACGAA CCGGAT TGGC ATCCGG ATTATGAGTCTTGTG xyn5A 3920850 - 3922502 + | endo-1,4-beta-xylanase, putative, xyn5A TERM 5031 3922560 - 3922535 - f 70 -4.8 -4.51812 | gap 1 CTTCAGAATAAGAAA TCACAGCG-GT AGTTA ACGCACTGTGA AATACATCAACCAAA TERM 5032 3922631 - 3922652 + F 93 -10.1 -4.56597 | opp_overlap 3922633, overlap 3922633 ACCCCGTACTGAATT AACCCGGTC TTCG GACCGGGTA TTTTTACAAGCAGCA TERM 5033 3922650 - 3922633 - f 85 -12.7 -3.37344 | opp_overlap 3922631 3922633 CCCGTACTGAATTAA CCCGGTC TTCG GACCGGG TATTTTTACAAGCAG TERM 5034 3922633 - 3922650 + F 95 -12.7 -3.90048 | opp_overlap 3922633, overlap 3922631 CCCGTACTGAATTAA CCCGGTC TTCG GACCGGG TATTTTTACAAGCAG TERM 5035 3923082 - 3923061 - g 82 -2.1 -5.42259 | opp_overlap 3923066, overlap 3923030 3923029 3923062 3923063 CCAGGGCGAAAAAAA TGGCAGCAC CGCC GAGCGACCA ACCGTCACCGGCGCC TERM 5036 3923301 - 3923289 - g 76 -9.1 -3.82084 | TGCCAACACCAACAA TGCCC AGG GGGCA GCGGTAGTCTGGGCG TERM 5037 3923873 - 3923854 - g 74 -7.8 -4.09511 | opp_overlap 3923872, overlap 3923855 AATATTCCGGTAAAA GCCCACAC CTTT GTGTGGGG TGCACAATCACCTTC TERM 5038 3923872 - 3923855 - g 75 -11.3 -3.05224 | overlap 3923854 ATATTCCGGTAAAAG CCCACAC CTTT GTGTGGG GTGCACAATCACCTT xyn10B 3922705 - 3924504 + | endo-1,4-beta-xylanase, xyn10B TERM 5039 3925007 - 3924986 - g 82 -2.1 -5.42259 | opp_overlap 3924991, overlap 3924955 3924954 3924987 3924988 CCAGGGCGAAAAAAA TGGCAGCAC CGCC GAGCGACCA ACCGTCACCGGCGCC TERM 5040 3925226 - 3925214 - g 76 -9.1 -3.82084 | TGCCAACACCAACAA TGCCC AGG GGGCA GCGGTAGTCTGGGCG TERM 5041 3925659 - 3925649 - g 75 -5.4 -4.60487 | GATCAGCCCTAAAAA TCCA GGC TGGA TATCCATCAAGGATC TERM 5042 3925828 - 3925838 + G 85 -6.8 -4.86731 | TCGGCAATACCGTTG CACC ACA GGTG TTTTATTTCCGCCCG abf62A 3924630 - 3926489 + | alpha-L-arabinofuranosidase, abf62A TERM 5043 3926522 - 3926563 + F 100 -23.9 -3.76968 | opp_overlap 3926532 3926535 ATCATTGTTTTGATT GCATCAGCAACATCCCGAC GCCC GTCGGGGTGCTGCTGATGC TTTCCTCCGTACATT TERM 5044 3926553 - 3926532 - f 71 -10.1 -3.21747 | opp_overlap 3926522, overlap 3926535 TGATTGCATCAGCAA CATCCCGAC GCCC GTCGGGGTG CTGCTGATGCTTTCC TERM 5045 3926550 - 3926535 - f 70 -10.4 -2.50016 | opp_overlap 3926522, overlap 3926532 TTGCATCAGCAACAT CCCGAC GCCC GTCGGG GTGCTGCTGATGCTT TERM 5046 3926988 - 3926967 - g 82 -2.1 -5.42259 | opp_overlap 3926972, overlap 3926936 3926935 3926968 3926969 CCAGGGCGAAAAAAA TGGCAGCAC CGCC GAGCGACCA ACCGTCACCGGCGCC TERM 5047 3927207 - 3927195 - g 76 -9.1 -3.82084 | TGCCAACACCAACAA TGCCC AGG GGGCA GCGGTAGTCTGGGCG TERM 5048 3928121 - 3928143 + G 86 -11.2 -3.85817 | overlap 3928122 TGTTTACCCCGGATC GCGGTCGCGC ATT GCGCGATCGG TTTGTCAGAAACAAT TERM 5049 3928122 - 3928142 + G 90 -14.7 -2.91276 | overlap 3928121 GTTTACCCCGGATCG CGGTCGCGC ATT GCGCGATCG GTTTGTCAGAAACAA fee1B 3926638 - 3928365 + | ferruloyl esterase, putative, fee1B TERM 5050 3928461 - 3928481 + G 100 -14 -5.14965 | GATAGCCAACCCTTT GGCCCGGT TCAAT ACCGGGCC TTTTTTAATCGCGGT TERM 5051 3928563 - 3928551 - g 72 -7.7 -3.89695 | overlap 3928555 TTTTGACAAAGACAA CAAGC TGT GCTTG CACAAAAGGCAGATC CJA_3283 3928444 - 3928611 + | hypothetical protein CJA_3284 3928767 - 3929936 + | transcriptional regulator, AraC family CJA_3285 3930177 - 3930287 + | hypothetical protein TERM 5052 3932498 - 3932484 - g 100 -4.2 -5.60993 | GCTGGTACAAAAAAA CCGGAC GCT ATCCAG CCATTCCCACGGTAT ebg98 3930449 - 3933499 + | endo-beta-galactosidase, putative, ebg98A TERM 5053 3933511 - 3933532 + F 100 -13 -5.5112 | GTAAATACTTCGGTT TGCCCGGC CCACAA GCCGGGCA TTTTTTATTAATACA TERM 5054 3933959 - 3933938 - g 82 -2.1 -5.42259 | opp_overlap 3933943, overlap 3933907 3933906 3933939 3933940 CCAGGGCGAAAAAAA TGGCAGCAC CGCC GAGCGACCA ACCGTCACCGGCGCC TERM 5055 3934178 - 3934166 - g 76 -9.1 -3.82084 | TGCCAACACCAACAA TGCCC AGG GGGCA GCGGTAGTCTGGGCG fee1A 3933588 - 3935336 + | ferruloyl esterase, fee1A TERM 5056 3935420 - 3935438 + T 100 -12.4 -5.56264 | CCCACCAGTGACATT GCCCGGTT TAT GACCGGGC TTTTTTATATTTACG TERM 5057 3935481 - 3935492 + T 76 -2.2 -5.42259 | GTTGAGCGACAAGTC TCCG TCAC TGGA TTTTTTTCGCCCTGC xerC 3936401 - 3935460 - | tyrosine recombinase XerC CJA_3289 3937118 - 3936423 - | hypothetical protein TERM 5058 3936627 - 3936615 - G 78 -5.5 -4.85782 | overlap 3936616 CGCCCCAAAAATAAA TGCCA GCT CGGCA CTGCCCAGGGTGCCG dapF 3937959 - 3937129 - | diaminopimelate epimerase TERM 5059 3937397 - 3937379 - G 79 -3.8 -5.03715 | gap 1, opp_overlap 3937389 3937391 ACCACCTGCAAAAAA CCG-GCG TTGACG CGCGCGG GAAAACGCGGGTGGT TERM 5060 3937424 - 3937403 - G 91 -11.5 -4.07687 | opp_overlap 3937391 3937389 ACGCGCGCGGGAAAA CGCGGGTGG TTTT CCACCAGCG GCCCCAATTGCCCGA lysA 3939226 - 3937979 - | diaminopimelate decarboxylase TERM 5061 3939268 - 3939256 - R 93 -10.5 -4.386 | opp_overlap 3939255 3939257 GAATCCTGCACAAAA GCCGC AGT GCGGC GGTTAATCTTCATCG CJA_3292 3939468 - 3939271 - | hypothetical protein CJA_3293 3940728 - 3939508 - | Sigma-54 interaction domain protein TERM 5062 3939732 - 3939709 - G 72 -6.6 -4.25458 | overlap 3939712 AAGTTCATGAATAAA GAAGCGCACG AGAT CGCGCACATC ATCGCGCCGCTCCTG TERM 5063 3939729 - 3939712 - G 72 -6.9 -4.24413 | overlap 3939709 TTCATGAATAAAGAA GCGCACG AGAT CGCGCAC ATCATCGCGCCGCTC TERM 5064 3940599 - 3940583 - G 100 -13.7 -3.57144 | GTCGCCAGGCCCAAA CGCTCCG CCC CGGAGCG CAGCACAATTTTGGT CJA_3294 3940844 - 3941917 + | FHA domain protein TERM 5065 3944407 - 3944391 - g 70 -3.8 -4.71828 | ACTTGATCAACAAAA TATAGA CACCC TCTATA CAGCCACAATTGTCT TERM 5066 3944590 - 3944562 - g 100 -11 -4.72986 | opp_overlap 3944565 3944566, overlap 3944565 3944566 TAGTCTGATGAAAAA CAACGGGGCACC TCAAC GGTGCCCCATTT GATGATCCGTAAAGG TERM 5067 3944587 - 3944565 - g 100 -12.7 -4.47707 | opp_overlap 3944565 3944566, overlap 3944562 3944566 TCTGATGAAAAACAA CGGGGCACC TCAAC GGTGCCCCA TTTGATGATCCGTAA TERM 5068 3944565 - 3944587 + G 84 -10.5 -3.79747 | opp_overlap 3944565 3944562 3944566, overlap 3944566 TCTGATGAAAAACAA CGGGGCACC TCAAC GGTGCCCCA TTTGATGATCCGTAA TERM 5069 3944586 - 3944566 - g 95 -14 -3.27901 | opp_overlap 3944565 3944566, overlap 3944565 3944562 CTGATGAAAAACAAC GGGGCACC TCAAC GGTGCCCC ATTTGATGATCCGTA TERM 5070 3944566 - 3944586 + G 86 -14 -2.87527 | opp_overlap 3944566 3944565 3944562, overlap 3944565 CTGATGAAAAACAAC GGGGCACC TCAAC GGTGCCCC ATTTGATGATCCGTA CJA_3295 3941914 - 3944592 + | putative serine/threonine protein kinase CJA_3296 3945137 - 3944628 - | hypothetical protein CJA_3297 3945166 - 3945327 + | hypothetical protein CJA_3298 3947567 - 3945339 - | putative TonB-dependent receptor TERM 5071 3946844 - 3946812 - G 70 -6.1 -4.18197 | ACCCGCCAGGGAAAA CGCATCCGTGGCCTG CCA CAGGGCACTCAAGCG CACAGCTTCGGTTTT CJA_3299 3948756 - 3947578 - | putative transcriptional regulator TERM 5072 3948715 - 3948694 - G 74 -2.3 -5.06451 | gap 1, overlap 3948696 3948705 CAGGAGCGCAAAAAA TATGCACAGC ATG GCTGT-CATC AGCAAAATGACATCG cbp6C 3948944 - 3949111 + | carbohydrate binding protein, putative, cbp6C TERM 5073 3949153 - 3949134 - T 100 -13.6 -5.61881 | opp_overlap 3949134 TTGGAAAAACAAAAA GCCGATGC GCTG GCATCGGC TTTTTGCTTTTAACG TERM 5074 3949134 - 3949153 + T 100 -13.6 -5.0925 | opp_overlap 3949134 TTGGAAAAACAAAAA GCCGATGC GCTG GCATCGGC TTTTTGCTTTTAACG CJA_3301 3949355 - 3949182 - | hypothetical protein TERM 5075 3949301 - 3949282 - G 76 -7.8 -4.23758 | AGCCCATAGGGAAAA CGCCGC AACAGGGA GCGGCG AAAAACATCATCCAA CJA_3302 3949486 - 3949352 - | hypothetical protein CJA_3303 3949797 - 3949483 - | hypothetical protein TERM 5076 3949745 - 3949726 - G 70 -10 -3.14463 | overlap 3949728 AACCTCCCGGATCAA CACCTGCG CACA CGCAGGTA ATGCGCCCACTATAG TERM 5077 3949743 - 3949728 - G 70 -10.4 -3.13403 | overlap 3949726 CCTCCCGGATCAACA CCTGCG CACA CGCAGG TAATGCGCCCACTAT TERM 5078 3950364 - 3950340 - g 74 -10 -3.54129 | gap 1, overlap 3950355 TAGACTCCTCGCAAA CCGCGC-CGGT AATC ACCATGCGCGG CGTGCGCTCGACCAA TERM 5079 3950913 - 3950937 + G 81 -12.1 -3.14647 | opp_overlap 3950891 AATACGCCTTCCGCG TTGCCGGCCTC TGG GAGCCCGGCGA TTCGCTGTCGTGGAT TERM 5080 3952322 - 3952288 - g 90 -15 -2.74012 | opp_overlap 3952287, overlap 3952311 CCAGCAGTGGAACTA CGCCACCGTCGACCTC TAC GAGATCGACCACGGCG ATTCGGTCAACCCGG CJA_3304 3950051 - 3952753 + | TonB-dependent receptor TERM 5081 3952782 - 3952802 + F 100 -13.9 -4.59773 | overlap 3952783 GAGTCTGATGCCCTT TGCCCCGCC CCC GGCGGGGCC TTTTTCAGCATCGGC TERM 5082 3952783 - 3952801 + F 100 -17.4 -3.35542 | overlap 3952782 AGTCTGATGCCCTTT GCCCCGCC CCC GGCGGGGC CTTTTTCAGCATCGG TERM 5083 3954318 - 3954303 - g 70 -6 -4.25283 | overlap 3954304 ACCTGGTGATCAAAA CCGGCG CCAA CGGCGG TGCCGATCCCGATGT glu5A 3952859 - 3955489 + | glucan exo-1,3-beta glucosidase, putative, glu5A TERM 5084 3955556 - 3955580 + F 90 -12.9 -3.54424 | TACATCCCTGTAGCT CCCGCAAGTCA TCC TGACTTGAGGG TTTCGAAACCTGAAC gly30A 3955656 - 3957098 + | glycoside hydrolase family 30, gly30A TERM 5085 3957129 - 3957152 + T 88 -5.9 -5.4833 | opp_overlap 3957129 AGCGCCACAAAAAAA CGCAGGTCG CTCCCA CAGCCTGCG TTTTTTATTGCGTGC TERM 5086 3957152 - 3957129 - T 91 -6.6 -5.61596 | opp_overlap 3957129 AGCGCCACAAAAAAA CGCAGGTCGC TCCC ACAGCCTGCG TTTTTTATTGCGTGC TERM 5087 3957215 - 3957227 + T 85 -5.5 -5.4505 | opp_overlap 3957215 ACGCGACGTTGAAAA TGGCT CCC GGCCA TTTTTTATTGCAACA manC 3958451 - 3957249 - | Mannose-6-phosphate isomerase-like protein TERM 5088 3958269 - 3958224 - G 100 -10.4 -5.33405 | overlap 3958226 CGCAGCAAAGAAAAA CG-CCTGGCGCGCCTGCACACG GACA CGGGTACTGGCA-GCCAGGTCG GGGACACCTTCAGGG TERM 5089 3958266 - 3958226 - G 75 -11.8 -2.86291 | gap 1, overlap 3958224 CAGCAAAGAAAAACG CCTGGCGCGCCTGCACACG GACA CGGGTACTGGCA-GCCAGG TCGGGGACACCTTCA TERM 5090 3958604 - 3958592 - g 84 -4.1 -5.26316 | opp_overlap 3958592, overlap 3958580 GCAGGCCACAAAAAA TTGCC AGG AGCAA TTTTTGACGCCGGAA TERM 5091 3958684 - 3958669 - g 100 -11.8 -5.93809 | CGGCCACAAAAAAAA CCCCGG AAAA CCGGGG GGAGAAAAAACACAA CJA_3308 3958592 - 3958738 + | hypothetical protein TERM 5092 3958843 - 3958830 - T 74 -3.9 -5.06451 | CAGTATGGCAAAAAA TGTAA CCGA TTACA ACATCAAGTGACAAT CJA_3309 3960219 - 3958900 - | MATE efflux family protein TERM 5093 3959001 - 3958975 - G 70 -5.9 -4.24285 | gap 2, overlap 3958986 CACATACGCAATAAA GGCGC--ACCAGA GCC CCTGGTTAGCGCC AATGGCCACCCACCA TERM 5094 3959116 - 3959097 - G 71 -3.4 -4.82901 | overlap 3959098 TGGCCCCGATAAAAA TGCCATCC AACT GGAAGGCC ACAAACGAACAGAGT TERM 5095 3959665 - 3959637 - G 100 -16.8 -2.71731 | GCCATTCCGCAATCA GGGTACCCAGGG CAATC CCCTGGATACCC CAACCGAAGCCCATC TERM 5096 3960072 - 3960053 - G 70 -4.2 -4.67943 | CCCCAATACACAAAA CTGAACAC CAGC GCGCCCAG GGCAATACCACCAAG TERM 5097 3960993 - 3960970 - R 75 -3 -5.26119 | CTTTTAAAAACAAAA CCCCGGGTAG CGAA CTAGCTGGAG AATATGATTTTAAAT CJA_3310 3968389 - 3961652 - | RHS Repeat family TERM 5098 3962279 - 3962267 - G 72 -7.7 -3.87967 | ACGATAATAATACAA TCCAG TCT CTGGA TCTAAGCGCCTTCCG TERM 5099 3962674 - 3962690 + g 70 -7.3 -4.12188 | opp_overlap 3962673 3962674 3962687 CAGCAGCACCAATAT TCGCTTG CAA TAAGCGA TTTTCCGCATCGTAC TERM 5100 3967790 - 3967766 - G 72 -5 -4.72846 | gap 1 CCAGACATGTAAAAA TGCC-ACACTG GATA CAGCGCCGGCA TAATCACAATCTGCC CJA_3311 3969338 - 3968493 - | FG-GAP repeat domain protein TERM 5101 3969455 - 3969423 - R 100 -19.3 -3.70109 | opp_overlap 3969419 CACAGGATCTAATAA CTTCCCACAAGGACC ATG AGTCCTTGCGGGAAG GGCGTGAATTATCAC CJA_3312 3970442 - 3969471 - | TonB family C-terminal domain protein CJA_3313 3970965 - 3970444 - | putative adventurous gliding motility protein S CJA_3314 3971507 - 3970962 - | hypothetical protein TERM 5102 3971234 - 3971244 + g 93 -2.4 -5.71712 | opp_overlap 3971234 TTTTGTAGTCATAAT CGCC CTC GGAG TTTTTTTCTATCCAC TERM 5103 3971360 - 3971375 + g 70 -6.1 -4.18018 | CCGGGGTACTGGAAT CTGCC AGGTCG GGCAG TTTTAAATCCAGCAC aglR 3972259 - 3971564 - | adventurous gliding motility protein R CJA_3316 3972642 - 3972292 - | hypothetical protein CJA_3317 3973366 - 3972632 - | putative TPR domain protein TERM 5104 3973237 - 3973269 + g 85 -7 -4.83615 | gap 1, opp_overlap 3973230 GCAAAATACTGGCAC CGGCCGCAG-CGA CAGGCCCC TCGTCTGCTGCCG TTTTTGTGCGCGATG CJA_3318 3976247 - 3973353 - | tetratricopeptide repeat domain protein TERM 5105 3973691 - 3973704 + g 70 -5.9 -4.18018 | CCAGCACCTGCTCCT GGCCT TTCA GGGCC TTTTCCATCGCAGCG TERM 5106 3975254 - 3975244 - G 70 -6.8 -4.08064 | opp_overlap 3975244 3975243 AAGCTGGGGGCAAAA TCCG AAT CGGA ATTATGCTGCACAAA CJA_3319 3978226 - 3976244 - | hypothetical protein TERM 5107 3976783 - 3976804 + g 74 -2.2 -5.1485 | CCCGCAATTGATCTC GGGCCACA CCCAGC TGTTGCTC TTTTTGTGTTAATTG TERM 5108 3977620 - 3977595 - G 74 -2.4 -5.09225 | AGTTCACGGAAAAAA GCCTGCGCCT GTTTAA AGTCGCCAGC GCGGGCATGGGCCGC CJA_3320 3978747 - 3978226 - | hypothetical protein CJA_3321 3980059 - 3979073 - | hypothetical protein TERM 5109 3979392 - 3979406 + g 77 -6.4 -4.72272 | CTGATAACCACCCCC TCTTCG GCA CGAGGA TTTTTAATGCCGACC CJA_3322 3980687 - 3980112 - | hypothetical protein TERM 5110 3980885 - 3980864 - R 78 -6.5 -4.65747 | overlap 3980865 CAACGCCCAATAAAA TCCACCAGC GATT ACTGGTGGG CAAACGATCGGCAGA TERM 5111 3980884 - 3980865 - R 73 -10 -3.38725 | overlap 3980864 AACGCCCAATAAAAT CCACCAGC GATT ACTGGTGG GCAAACGATCGGCAG gspM 3981448 - 3980966 - | General secretion pathway protein M gspL 3982733 - 3981459 - | General secretion pathway protein L TERM 5112 3981529 - 3981547 + g 72 -10.2 -3.38046 | overlap 3981527 3981530 CTCAGTAATTCGGCA GCCAGGCC CTG GGCCTGGA TATTTGAACTGAGGG TERM 5113 3981530 - 3981546 + g 84 -13.7 -2.62613 | overlap 3981529 3981527 TCAGTAATTCGGCAG CCAGGCC CTG GGCCTGG ATATTTGAACTGAGG TERM 5114 3981809 - 3981825 + g 86 -9.4 -4.41047 | overlap 3981818 CAGCCGCTTCAATGT CCTGGC GAATG GCCAGG TTTTCCTTGCCCAGT gspK 3983985 - 3982828 - | General secretion pathway protein K TERM 5115 3982906 - 3982920 + gr 79 -4.3 -4.87892 | ATACACATCTTCCCG CTGAA TGACT TTCAG TTTGTTTTCTTCGCC TERM 5116 3983029 - 3983005 - GR 79 -4.9 -4.88067 | overlap 3983006 3983007 ATTGAGCCAGAAAAA TCCCGACTTGA GAT TCAAGCCGGTG CCGTCCAGATTGCGA TERM 5117 3983027 - 3983007 - GR 76 -11.9 -2.70788 | overlap 3983006 3983005 TGAGCCAGAAAAATC CCGACTTGA GAT TCAAGCCGG TGCCGTCCAGATTGC gspJ 3984643 - 3983954 - | General secretion pathway protein J gspI 3985109 - 3984624 - | General secretion pathway protein I gspH 3985786 - 3985109 - | General secretion pathway protein H TERM 5118 3985208 - 3985222 + gr 70 -10 -2.96216 | overlap 3985210 TTCGCCCATGAGGTT GAGCGT AAT ACGCTC TATATCGTCCTCGCG gspG 3986195 - 3985740 - | General secretion pathway protein G TERM 5119 3986244 - 3986224 - R 75 -6.2 -4.46514 | gap 1, opp_overlap 3986220 3986238, overlap 3986227 AGTCACTCAAACAAA GAATGGCCT TAGG AGGCCA-TC TGGGTCATTTCAAAG TERM 5120 3986242 - 3986227 - R 83 -9 -4.34285 | opp_overlap 3986220 3986238, overlap 3986224 CACTCAAACAAAGAA TGGCCT TAGG AGGCCA TCTGGGTCATTTCAA gspF 3987467 - 3986232 - | General secretion pathway protein F TERM 5121 3986448 - 3986469 + g 72 -7.2 -4.18018 | opp_overlap 3986435 3986448 CACCAGCTGCACCAA CAGCGGCG GGAATG CACCGCTG TTTTCCATGGCGCGA TERM 5122 3986512 - 3986531 + g 70 -10 -3.1876 | gap 1, opp_overlap 3986523, overlap 3986521 CCTTCACGCACCGCC GCC-GCGAC AGA GTCGCAGGC TTCCTGCATCACCTT TERM 5123 3987403 - 3987424 + g 71 -2.9 -4.75308 | TGACGCTCGGAATCC CCTTCAAGG ATGC CCTTAACGG TTTTTCCATCTTCAT gspE 3989057 - 3987483 - | General secretion pathway protein E gspD 3991106 - 3989061 - | General secretion pathway protein D TERM 5124 3990913 - 3990931 + g 81 -13.2 -2.68546 | overlap 3990911 3990910 TCGATAATGATCGTT TTGCCGGT AGC ACCGGCAA TGAATTTAATCACTT gspC 3992261 - 3991122 - | General secretion pathway protein C TERM 5125 3991151 - 3991163 + g 79 -4.7 -4.88405 | TATCGAGATTGATCA CGCTG CCG CCGCG TTTTATTTCCAGGTT TERM 5126 3992458 - 3992484 + H 80 -7.2 -4.59511 | gap 1, opp_overlap 3992458 GAAATCACAAAAAAA CCCCGC-GGCG CAGGGA CACCAGCGGGG TTTTTACAGGATGTT TERM 5127 3992484 - 3992458 - H 100 -10.1 -5.75599 | gap 1, opp_overlap 3992458 GAAATCACAAAAAAA CCCCGC-GGCGC AGGG ACACCAGCGGGG TTTTTACAGGATGTT TERM 5128 3992805 - 3992790 - g 76 -4 -5.0133 | CATGCCCCCAAAAAA GAAACC TATC GATTTC GAACAGTCCCTCAAT xseB 3992776 - 3993024 + | exodeoxyribonuclease VII, small subunit ispA 3993021 - 3993908 + | geranyltranstransferase TERM 5129 3993927 - 3993948 + F 70 -10.1 -3.0771 | overlap 3993926 TGTCCTGGCTGACCG GCCCAGCCA GCGC TGGCTAGGC ATTTGTGCTTTCGAC TERM 5130 3995191 - 3995209 + G 74 -5.9 -4.56597 | GGGACAAAAGCCGGT GGTGGCG ATTTA CTCCACC TTTTTACAGCGCGCC TERM 5131 3995717 - 3995704 - g 70 -3.7 -4.63932 | CACCCTGGAAGAAAA CGCCC TGGC GGGTG GAGCAGGCAGTGCGG dxs 3994013 - 3995923 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 5132 3995984 - 3995961 - T 100 -16.8 -5.60993 | opp_overlap 3995961 CTTTCCACAAAAAAA TACCCCCGAG CAAA CTCGGGGGTA TTGTGTTTCTGGCGC TERM 5133 3995961 - 3995984 + T 100 -16.8 -3.89695 | opp_overlap 3995961 CTTTCCACAAAAAAA TACCCCCGAG CAAA CTCGGGGGTA TTGTGTTTCTGGCGC cel5E 3997831 - 3996014 - | cellulase, putative, cel5E TERM 5134 3998341 - 3998330 - H 82 -3 -5.50499 | TTACAGCCAAAAAAA GTAA CCGA TTAC AAACACAAGAGCGCG TERM 5135 3999518 - 3999501 - g 71 -9.1 -3.54307 | AACACGTCGCGCAAA GCCACCA TCTT TGGCGGC AGCGGTAGTTCGAGC man5A 3998478 - 3999770 + | endo- 1,4-beta-mannanase man5A TERM 5136 3999810 - 3999784 - T 100 -14.4 -4.73388 | AATTCCCATGAAAAA GGCCGCGCCTGT GAT ACAAGTGCGGCC ATCAATAAACGCTCC cae1C 4001003 - 4000143 - | carbohydrate esterase, putative, cae1C TERM 5137 4000929 - 4000901 - G 72 -4.6 -4.64766 | gap 1, opp_overlap 4000902, overlap 4000906 GGTAGATGGCAAAAA CCATATCGCAGTT GAGT ACCTGCGAT-CGG TGTTTGTATCGCTTC adhC 4002128 - 4001019 - | alcohol dehydrogenase C CJA_3341 4002279 - 4003178 + | transcriptional regulator, LysR family nupG 4004425 - 4003211 - | nucleoside-transport system protein TERM 5138 4004270 - 4004256 - G 76 -4.2 -4.96523 | opp_overlap 4004269 AAACCAATAATAAAA GGCG CCACTAT CGCC CCTATGGCCTGGGTG CJA_3343 4005735 - 4004593 - | Oxidoreductase family, NAD-binding Rossmann fold domain protein TERM 5139 4005175 - 4005152 - G 75 -11.6 -3.05935 | opp_overlap 4005153 4005157 4005158 ATATCCCCCAGGCAA CCCGCCGCGC CCGA GCGCGCCGGA TCGGTGCGCCAGGCC TERM 5140 4005153 - 4005195 + g 90 -9.7 -4.30719 | gap 2, opp_overlap 4005152, overlap 4005157 4005158 TATCCCCCAGGCAAC CCGCCGCGCCCGAGCGCGCCG GAT CGGTGCGC-CAGGC-CGCCTG TTTATTGTCAGCGGC TERM 5141 4005157 - 4005193 + g 88 -11.3 -3.75817 | opp_overlap 4005152, overlap 4005153 4005158 CCCCAGGCAACCCGC CGCGCCCGAGCGCGCCG GAT CGGTGCGCCAGGCCGCC TGTTTATTGTCAGCG TERM 5142 4005158 - 4005192 + g 90 -14.8 -2.85008 | opp_overlap 4005152, overlap 4005157 4005153 CCCAGGCAACCCGCC GCGCCCGAGCGCGCCG GAT CGGTGCGCCAGGCCGC CTGTTTATTGTCAGC CJA_3344 4006790 - 4005738 - | AP endonuclease family 2 C terminus family TERM 5143 4006187 - 4006151 - G 75 -4.4 -4.87133 | gap 1, overlap 4006152 4006153 AGGGGTCAAACAAAA TGTTCGCGCGCGGGTGA TGAT TCACCGCCGCGAGAA-A GCGCTCAAAGGTCGC TERM 5144 4006391 - 4006404 + g 85 -6.7 -4.74801 | overlap 4006387 AAAAGGTCGCATGGG CCTTG AGGC CAAGG TTTTTACTGGCCTTG TERM 5145 4006773 - 4006783 + g 72 -6.8 -4.25848 | TAAAAAAATGGCGGG CCCT TTC AGGG TTTTCATGGGGGGTT CJA_3345 4007670 - 4006972 - | CAAX amino terminal protease family protein TERM 5146 4007566 - 4007552 - G 73 -4.2 -4.80882 | AGCGGATAGGAAAAA TCCTCG GGT CGATGA GTCGCCGCCCAAAAC TERM 5147 4007800 - 4007836 + r 71 -3.6 -4.73613 | gap 1, opp_overlap 4007800 ATGGTGTATAAGAAA GCGGGCCGATTTTTGCG AAGG CGTCCAA-TCGACCCGC TTTTATTGCTGCTAC dnaJ 4008969 - 4007848 - | chaperone protein DnaJ TERM 5148 4008851 - 4008874 + g 71 -9.6 -3.54146 | overlap 4008849 TCCTCTGCCGATGGA TCATCCGGGT TGCG ATCCGGGTGA TATTTCATTGCCACG TERM 5149 4009006 - 4009035 + r 100 -17.3 -4.66609 | opp_overlap 4009009 4009013, overlap 4009007 TCAACTCTGCTTACA TGACAAATGCGGG CAAG CCCGCATTTGTCG TTTTTACATCCCGTG TERM 5150 4009007 - 4009034 + r 100 -18.6 -3.39483 | opp_overlap 4009009 4009013, overlap 4009006 CAACTCTGCTTACAT GACAAATGCGGG CAAG CCCGCATTTGTC GTTTTTACATCCCGT TERM 5151 4009032 - 4009009 - R 90 -15.4 -2.62263 | opp_overlap 4009007 4009006, overlap 4009013 ACTCTGCTTACATGA CAAATGCGGG CAAG CCCGCATTTG TCGTTTTTACATCCC TERM 5152 4009028 - 4009013 - R 87 -10.4 -4.0162 | opp_overlap 4009007 4009006, overlap 4009009 TGCTTACATGACAAA TGCGGG CAAG CCCGCA TTTGTCGTTTTTACA dnaK 4011011 - 4009089 - | chaperone protein DnaK TERM 5153 4010614 - 4010635 + g 76 -3.6 -4.90918 | overlap 4010615 GCTTCGGTCACTTTC TCACCGAG ATAATC CTCGGCGG TTTTCTTCATTTTCT TERM 5154 4011083 - 4011095 + r 72 -10.5 -2.7782 | overlap 4011076 4011084 GTAGTTAGTCGTTGA GCGCG CAG CGCGC GTTGTTCGACGGTTG TERM 5155 4011084 - 4011096 + r 79 -10.5 -3.63569 | overlap 4011083 4011076 TAGTTAGTCGTTGAG CGCGC AGC GCGCG TTGTTCGACGGTTGG grpE 4011764 - 4011189 - | co-chaperone GrpE CJA_3349 4012030 - 4012125 + | hypothetical protein CJA_3350 4012225 - 4013844 + | methyl-accepting chemotaxis protein TERM 5156 4014732 - 4014707 - g 85 -8.9 -4.57341 | opp_overlap 4014706 AACCTGCCGGAAAAA TCCGCCGCGCT CAGC AGCGCCGAGGA CTTACTGACCAGCGC TERM 5157 4015149 - 4015136 - g 78 -9.5 -3.85817 | ATCCCCCTGGACAAA CCCGG CGCC CCGGG ACTGGAAGAGGTGGA TERM 5158 4015214 - 4015183 - g 74 -10.8 -3.23216 | gap 1, opp_overlap 4015183 CCTGATCAGTACCAA CCCCGGACAG-GCGC CGC GCGCACTGGCCAAGG TTGCCTCCGGTGGTG TERM 5159 4015494 - 4015464 - g 100 -6.1 -5.52384 | gap 1, opp_overlap 4015471 4015472 CCGCCAGCAAAAAAA CCG-CCGAATCCAC CCTG GTGGAATTGGTCGG TGACGCCAAGGTGGA recN 4013924 - 4015591 + | DNA repair protein RecN TERM 5160 4015649 - 4015615 - T 100 -21 -2.78384 | opp_overlap 4015625, overlap 4015625 GCTGGCCTTAGCACA GGTAAAAAAAGCGGCC TTG AGCCGCTTTTTTTACC TCGCTGATCGGGCAG TERM 5161 4015639 - 4015625 - T 100 -9.2 -5.50499 | opp_overlap 4015625, overlap 4015615 GCACAGGTAAAAAAA GCGGCC TTG AGCCGC TTTTTTTACCTCGCT TERM 5162 4015625 - 4015639 + T 100 -8.5 -5.47821 | opp_overlap 4015625 4015615 GCACAGGTAAAAAAA GCGGC CTTGA GCCGC TTTTTTTACCTCGCT fur 4016076 - 4015666 - | transcriptional regulator Fur CJA_3353 4016107 - 4016604 + | Outer membrane lipoprotein omlA precursor TERM 5163 4016625 - 4016649 + T 100 -15.1 -4.17048 | opp_overlap 4016628, overlap 4016628 TGCTACAACCACGAA TAATGCCCGGT AAT ACCGGGCATTG TTGTTTTCAGGGGCA TERM 5164 4016646 - 4016628 - T 100 -14.6 -3.78793 | opp_overlap 4016625 4016628 TACAACCACGAATAA TGCCCGGT AAT ACCGGGCA TTGTTGTTTTCAGGG TERM 5165 4016628 - 4016646 + T 100 -14.6 -4.20868 | opp_overlap 4016628, overlap 4016625 TACAACCACGAATAA TGCCCGGT AAT ACCGGGCA TTGTTGTTTTCAGGG CJA_3354 4018321 - 4016678 - | GGDEF domain protein TERM 5166 4017095 - 4017111 + g 72 -11.5 -2.53263 | GCTGAGTGGCTCTCC GCTGCGC TGG GCGCGGC TCAGTTCCAGATCCA TERM 5167 4018049 - 4018037 - G 72 -7.7 -3.93038 | overlap 4018040 GATGGCAACAGCAAA CAAGC GCA GCTTG CCCGTATCCAGTTGC TERM 5168 4019036 - 4019051 + G 73 -9 -3.68073 | ACTGGTGGGAATAGG CAGCGA ACTT TCGCTG TTATTCAATCCCCTG TERM 5169 4019140 - 4019158 + G 100 -16 -2.80816 | CGGTGATCACCAGTG CGCGCACC TTT GGTGCGCG TCTGATGGCTGAGGC TERM 5170 4019410 - 4019428 + G 70 -6.7 -4.13282 | gap 1 CGCTATTGCGCGAAC GCCTGCGC CAGG GC-CAGGC TTTTCGCCATCTGGT TERM 5171 4020265 - 4020278 + G 73 -9.5 -3.62096 | TCTCCCTGGCGGATG GCCGG ATTA CCGGC TTTGAGGTGCTGACC CJA_3355 4018524 - 4020941 + | sensory box/GGDEF family protein CJA_3357 4021047 - 4022267 + | HD domain protein CJA_3356 4022650 - 4022261 - | response regulator CJA_3358 4024932 - 4022647 - | two-component hybrid sensor and regulator TERM 5172 4023019 - 4022990 - G 79 -2.1 -5.26316 | gap 1, overlap 4022991 4022992 GCATTGGATAAAAAA TTCGTCAGCACTTG CTG CAAGCGCTGG-GCA TCGATATTCACACTG CJA_3359 4029011 - 4025046 - | two-component hybrid sensor and regulator TERM 5173 4025173 - 4025209 + g 81 -8.5 -4.431 | opp_overlap 4025180 GTTTTTTGCAACCAG CGCAAAGGCCTGTCCCG CCC CGCGCCGGGCAATTGCG TTTTATCGGTCGATG TERM 5174 4027668 - 4027680 + g 74 -10.5 -3.25823 | opp_overlap 4027667 TTCACTTTCATACAT GGGCG TCT CGCCC TTGATGTGACGCAAC TERM 5175 4028052 - 4028038 - G 85 -11.4 -3.6422 | overlap 4028036 CACTTGGCCAAAATA CGCCGA CCA TCGGCG AGATAATCGCTATAG TERM 5176 4029045 - 4029091 + r 83 -13.7 -2.61912 | opp_overlap 4029049 4029054 4029058, overlap 4029048 4029054 4029057 GGGAAACCGGACAGG CAAAGACAAGAAACCCCGTCC ACTGG GGCCGGGGCTTCTTGTCGTCG ATTATCGCTAAATCC TERM 5177 4029048 - 4029088 + r 83 -14 -2.6063 | opp_overlap 4029049 4029054 4029058, overlap 4029045 4029054 4029057 AAACCGGACAGGCAA AGACAAGAAACCCCGTCC ACTGG GGCCGGGGCTTCTTGTCG TCGATTATCGCTAAA TERM 5178 4029087 - 4029049 - R 100 -19.7 -3.71645 | opp_overlap 4029048 4029045 4029054 4029057, overlap 4029054 4029058 AACCGGACAGGCAAA GACAAGAAACCCCGTCC ACTGG GGCCGGGGCTTCTTGTC GTCGATTATCGCTAA TERM 5179 4029082 - 4029054 - R 95 -12.4 -3.85256 | opp_overlap 4029048 4029045 4029054 4029057, overlap 4029049 4029058 GACAGGCAAAGACAA GAAACCCCGTCC ACTGG GGCCGGGGCTTC TTGTCGTCGATTATC TERM 5180 4029054 - 4029082 + r 77 -10.2 -3.45033 | opp_overlap 4029054 4029049 4029058, overlap 4029048 4029045 4029057 GACAGGCAAAGACAA GAAACCCCGTCC ACTGG GGCCGGGGCTTC TTGTCGTCGATTATC TERM 5181 4029078 - 4029058 - R 90 -9.6 -4.52143 | opp_overlap 4029057 4029054 4029048 4029045, overlap 4029054 4029049 GGCAAAGACAAGAAA CCCCGTCC ACTGG GGCCGGGG CTTCTTGTCGTCGAT TERM 5182 4029135 - 4029123 - R 85 -6.9 -5.0538 | overlap 4029125 GTGTAGTGCAAAAAA CGGCA GCA CGCCG GGACGGCGGATAGCG CJA_3360 4029477 - 4029154 - | Protein yfjF CJA_3361 4029938 - 4029504 - | hypothetical protein TERM 5183 4030259 - 4030240 - g 78 -5.6 -4.8622 | GTTGGGAAGTAAAAA GCCTGCGC GCCG GCAAAGGC AATATCACCGACTGC smpB 4030116 - 4030595 + | SsrA-binding protein TERM 5184 4030618 - 4030600 - T 79 -11.6 -3.1505 | ACCAGCGCTGATTAA CGCCAGCG CAC CGCGGGCG ACTGCAAGACCAATG CJA_3363 4031642 - 4030596 - | transcriptional regulator, LuxR family TERM 5185 4030878 - 4030866 - G 71 -10.5 -2.88663 | opp_overlap 4030854, overlap 4030852 ATGCACCGCCACATA GGCGG TTC CCGCC CATAAGGCCGCGTCG TERM 5186 4031626 - 4031576 - G 85 -11.7 -3.63805 | overlap 4031579 4031607 ATTTGATACTGGAAA TCACGCGGTCGGCACGCGCATTG GTCAG CAACATGCGCGCCGAGCGCGAGC CTGTGGCCTCGACCA TERM 5187 4031623 - 4031579 - G 100 -16.4 -2.93585 | overlap 4031576 4031607 TGATACTGGAAATCA CGCGGTCGGCACGCGCATTG GTCAG CAACATGCGCGCCGAGCGCG AGCCTGTGGCCTCGA CJA_3364 4031879 - 4031760 - | hypothetical protein TERM 5188 4032112 - 4032125 + G 70 -5.2 -4.30719 | CCGATTGGTCCATTG CCGG CCTGGC CCGG TTTGTTGTCGACCAA CJA_3365 4031925 - 4032680 + | hydrolase, alpha/beta fold family TERM 5189 4033849 - 4033823 - g 74 -3.1 -5.00884 | opp_overlap 4033826 ATGGGCGTTAAAAAA CAACAGGAT GTTATTCGT ATCCTGTTA TCCGGCATTTTGAAT CJA_3366 4032758 - 4033873 + | transcriptional regulator, LuxR family TERM 5190 4033906 - 4033887 - f 84 -7.8 -4.86033 | opp_overlap 4033886 4033887 4033889 AAACCGCCACAAAAA CAGCCGCA TCAT TGTGGCTG ATTTCCCAGCACCCG TERM 5191 4033992 - 4034002 + F 70 -2.4 -5.0133 | TCAATATCAATGGCA CTGG AAT CCTG TTTTTTGGGCGGATA TERM 5192 4034858 - 4034842 - g 70 -10.9 -2.74741 | opp_overlap 4034845, overlap 4034845 AGCACATTGCAAGCA CAACTGC TCG GCAGTTG GATGTATAGCGAAGG TERM 5193 4035894 - 4035861 - g 73 -9.1 -3.61398 | gap 1, overlap 4035881 GTTGGTGGGTAACAA CAGTGATA-CAGAATC CAA AATCCTGTTATCACTG GAGTCTGAAGAGGAA CJA_3367 4034071 - 4035954 + | putative lipoprotein TERM 5194 4035995 - 4036017 + F 100 -12 -4.72986 | opp_overlap 4035999 ATGGTTTTTGTTTAA GCCAGCGC CCATAAA GCGCTGGC TTTTTCATGCACGTC CJA_3368 4036024 - 4038279 + | hypothetical protein TERM 5195 4038304 - 4038332 + T 87 -10.4 -4.13767 | gap 1, opp_overlap 4038306 4038310, overlap 4038305 4038306 4038310 CAATGCGTCAGCAAG TA-CAAACCCGCC AGTT GGCGGGTTTGGTG TTTTGGAATGGAGGG TERM 5196 4038305 - 4038330 + T 95 -13.3 -3.6692 | opp_overlap 4038306 4038310, overlap 4038304 4038306 4038310 AATGCGTCAGCAAGT ACAAACCCGCC AGTT GGCGGGTTTGG TGTTTTGGAATGGAG TERM 5197 4038329 - 4038306 - T 100 -16.8 -2.78018 | opp_overlap 4038305 4038304 4038306 4038310, overlap 4038310 ATGCGTCAGCAAGTA CAAACCCGCC AGTT GGCGGGTTTG GTGTTTTGGAATGGA TERM 5198 4038306 - 4038329 + T 100 -16.8 -2.79831 | opp_overlap 4038306 4038310, overlap 4038305 4038304 4038310 ATGCGTCAGCAAGTA CAAACCCGCC AGTT GGCGGGTTTG GTGTTTTGGAATGGA TERM 5199 4038325 - 4038310 - T 95 -11.8 -4.08144 | opp_overlap 4038306 4038305 4038304 4038310, overlap 4038306 GTCAGCAAGTACAAA CCCGCC AGTT GGCGGG TTTGGTGTTTTGGAA TERM 5200 4038310 - 4038325 + T 95 -11.8 -4.07678 | opp_overlap 4038310 4038306, overlap 4038306 4038305 4038304 GTCAGCAAGTACAAA CCCGCC AGTT GGCGGG TTTGGTGTTTTGGAA cel5C 4039445 - 4038351 - | cellulase, putative, cel5C CJA_3370 4043521 - 4039556 - | hypothetical protein TERM 5201 4040740 - 4040750 + gr 72 -8.2 -3.8186 | opp_overlap 4040732 TATCAACCCGGAAGT CGCC GGT GGCG TTATTGATTGGCGTC TERM 5202 4041161 - 4041173 + gr 74 -10.5 -3.17723 | TGCCTTAAGCGCCAA GCCGG CAT CCGGC TTCCATTCGCCATGA TERM 5203 4043374 - 4043394 + gr 72 -9 -3.53012 | gap 1 CCACCCATTGCAGCA CCCAG-CGG CTGC CCGTCTGGG TTTCCACCAGGGCAC CJA_3371 4045230 - 4043485 - | outer membrane protein, OMP85 family TERM 5204 4043835 - 4043824 - GH 79 -3.6 -5.03715 | overlap 4043825 4043826 ACCACCGGCAAAAAA GCGC ACCG ACGC GGGCAGTTCGTCGAA TERM 5205 4043913 - 4043892 - GH 79 -7.9 -4.38712 | gap 1, opp_overlap 4043890, overlap 4043893 CCGAGCGCCATAAAA GCCGCCC-GG GCC CCAGGGCGGT AATCCATTTGGCGCG TERM 5206 4043912 - 4043893 - GH 77 -11.4 -3.22906 | gap 1, opp_overlap 4043890, overlap 4043892 CGAGCGCCATAAAAG CCGCCC-GG GCC CCAGGGCGG TAATCCATTTGGCGC TERM 5207 4044702 - 4044683 - GH 77 -11.4 -3.12005 | overlap 4044675 TAGACAAGGGCAATA CGCGCCGA TCGT TCGGCACG GTTGACCTCTACGCG TERM 5208 4046033 - 4046021 - g 77 -3.3 -5.03747 | AAATCCCTGAAAAAA TCCGG TAT CCGCA ATATCCAATTGTACG CJA_3372 4045370 - 4046227 + | hypothetical protein CJA_3373 4046248 - 4046637 + | hypothetical protein TERM 5209 4046940 - 4046962 + G 100 -7.6 -5.56264 | ACTATCTCTGGGCGG GGCTGTGCCT GCT GGGCGCGGTC TTTTTTATGTTTCGC CJA_3374 4046642 - 4046995 + | hypothetical protein TERM 5210 4047047 - 4047031 - f 71 -7.9 -3.9941 | TCGGCTATAACTAAA GGTGACC CGG GGTCGCC AAAAGCAGCGCCCAG TERM 5211 4048270 - 4048284 + G 70 -5.6 -4.42639 | GGTATGCGGCGCGGC CTGCAG GAA CAGCAG TTTTCCTTGCACTAT TERM 5212 4048820 - 4048808 - g 72 -10.5 -2.98361 | opp_overlap 4048809 4048810, overlap 4048803 4048796 AAATGGATAACCACA GCGGC GAT GCCGC CATTGTCCGCGCCAT CJA_3375 4047100 - 4049016 + | sensory box/GGDEF family protein TERM 5213 4049096 - 4049121 + F 100 -11.9 -5.19328 | opp_overlap 4049096 AGGTCCCTAAAAAAA CGCCTTGCATA AAAT TCTGCAAGGCG TTTTTATTGTCGCGT TERM 5214 4049121 - 4049096 - f 100 -11.9 -5.40474 | opp_overlap 4049096 AGGTCCCTAAAAAAA CGCCTTGCATA AAAT TCTGCAAGGCG TTTTTATTGTCGCGT CJA_3376 4049213 - 4049764 + | hypothetical protein rnk 4050347 - 4049805 - | regulator of nucleoside diphosphate kinase TERM 5215 4050359 - 4050336 - G 85 -8.2 -4.58395 | gap 1 CCTATGCGTGAAAAA CGCAA-AGAGC AAG GCTCTCCTGCG CGAAGATAGAAAATT CJA_3378 4051627 - 4050506 - | hypothetical protein TERM 5216 4050813 - 4050795 - G 71 -2.4 -4.93365 | TCCCATAACCAAAAA TTACAGAT ATA AGCTGCAA CCTGAAATTTAGCAG CJA_3379 4053045 - 4051663 - | MATE efflux family protein subfamily TERM 5217 4052350 - 4052330 - G 76 -7.6 -4.25104 | gap 1, opp_overlap 4052336 TGCTGGCGATCAAAA CCTTCGCGC AATT GCGC-AAGG CTCAGTGCGTAATTG TERM 5218 4052336 - 4052367 + g 91 -7.4 -5.07567 | opp_overlap 4052330 CGATCAAAACCTTCG CGCAATTGCGCA AGGCTCAG TGCGTAATTGTG TTTTTTGCCGTATAC CJA_3380 4054344 - 4053079 - | excitatory amino acid transporter TERM 5219 4053453 - 4053443 - G 85 -8.2 -4.4648 | opp_overlap 4053442 AGCGGCACGACAAAA CGCG ATA CGCG CTGGCTTACCCCCAT TERM 5220 4053932 - 4053922 - G 72 -5.4 -4.57073 | CAGGCTGCGCAAAAA TTGC GAC GCAA AATCACCGGGAGAAA CJA_3381 4055009 - 4054347 - | hypothetical protein TERM 5221 4054677 - 4054659 - G 74 -5.9 -4.57837 | ATACGCGCGTAAAAA GGCGGGT TCCAG ATCCGCC GGACAAATACCTTCG gt51B 4057497 - 4055110 - | murein polymerase, putative, gt51B TERM 5222 4056903 - 4056893 - G 72 -8.2 -3.73953 | opp_overlap 4056893 AGTACCGCGAGCAAA GCCG CTT CGGC CCAGGAGAGGCTTTC CJA_3383 4058709 - 4057501 - | hemY protein TERM 5223 4057739 - 4057760 + g 70 -3.5 -4.68908 | overlap 4057740 TTGAGCCAGCCTTCA GCCATGCGC AATT GCGCGCGGA TTTCTTTTAACTGCA TERM 5224 4058712 - 4058735 + r 89 -10.9 -4.07877 | AGCGACGTTTCATTA GCGGCCTCC ACGACG GGCGGCCGC TTGTTTCTCACGTCG CJA_3384 4059878 - 4058709 - | putative uroporphyrinogen III methylase TERM 5225 4058869 - 4058897 + g 81 -9.6 -4.10453 | opp_overlap 4058877, overlap 4058877 GCCTCCGCATTCAGG GCGTAATACTGG TTGAT CCAGTTTTGCGC TTTTACCAGGCTTTC hemD 4060705 - 4059872 - | uroporphyrinogen-III synthase TERM 5226 4060651 - 4060623 - G 88 -12.4 -3.65199 | gap 1 AATCGTGTAGCGAAA CCCTGGGCC-TGC AATT GCTTGGCCCAGGG CTCTGCCTGTGCCTG hemC 4061649 - 4060702 - | porphobilinogen deaminase TERM 5227 4061762 - 4061717 - R 72 -8.1 -3.78022 | overlap 4061719 4061722 4061742 4061758 GTGAGAGGCACGAAA GAGGAGGTTCGCACACCCGCC ACAA GGCCGATGTGCGAACAGCGGC AGGATCAGGCCGCGG TERM 5228 4061760 - 4061719 - R 70 -9.3 -3.47361 | overlap 4061717 4061722 4061742 4061758 GAGAGGCACGAAAGA GGAGGTTCGCACACCCGCC ACAA GGCCGATGTGCGAACAGCG GCAGGATCAGGCCGC TERM 5229 4061757 - 4061722 - R 84 -14 -2.87769 | overlap 4061719 4061717 4061742 AGGCACGAAAGAGGA GGTTCGCACACCCGCC ACAA GGCCGATGTGCGAACA GCGGCAGGATCAGGC CJA_3387 4063200 - 4061767 - | high affinity choline transporter TERM 5230 4063256 - 4063281 + r 75 -9.7 -3.61103 | gap 1, opp_overlap 4063255 GACGCAAGTACAGAC TCACCAGCGGGG TTA CCCC-CTGGAGA TTTAACCTGGCCTTA CJA_3388 4063598 - 4063314 - | hypothetical protein TERM 5231 4063437 - 4063464 + g 70 -9.8 -3.21276 | overlap 4063436 4063439 GTTCATCCTCATTAG CAGCCGCGCCAT AGGT ATTGCGCGGCTA TCTTGTGAACCAGCG TERM 5232 4063439 - 4063462 + g 81 -12.4 -3.17146 | overlap 4063437 4063436 TCATCCTCATTAGCA GCCGCGCCAT AGGT ATTGCGCGGC TATCTTGTGAACCAG TERM 5233 4063578 - 4063564 - G 100 -9.2 -5.71983 | opp_overlap 4063564 4063559, overlap 4063556 TTAACCATAAAAAAA CCCGCA TGA CGCGGG TTTTCTTTAACGGAT TERM 5234 4063564 - 4063578 + g 93 -8.5 -4.87133 | opp_overlap 4063556 4063564, overlap 4063559 TTAACCATAAAAAAA CCCGC ATGAC GCGGG TTTTCTTTAACGGAT CJA_3389 4063925 - 4063605 - | PA5285-like protein TERM 5235 4064303 - 4064274 - R 100 -11.5 -4.76075 | opp_overlap 4064280, overlap 4064280 AGCACAGCAACAAAA CAGAAACGCCACC CGAA GGTGGCGTTTTTA TGGGAGGCAACCAGC TERM 5236 4064297 - 4064280 - R 100 -12.7 -4.56159 | opp_overlap 4064280, overlap 4064274 GCAACAAAACAGAAA CGCCACC CGAA GGTGGCG TTTTTATGGGAGGCA TERM 5237 4064280 - 4064297 + r 100 -12.7 -4.82901 | opp_overlap 4064280 4064274 GCAACAAAACAGAAA CGCCACC CGAA GGTGGCG TTTTTATGGGAGGCA CJA_3390 4064664 - 4064326 - | Nitrogen regulatory protein P-II CJA_3391 4066115 - 4064847 - | ammonium transporter CJA_3392 4066485 - 4066147 - | Nitrogen regulatory protein P-II TERM 5238 4066364 - 4066325 - G 86 -7 -5.00616 | opp_overlap 4066324, overlap 4066326 GTTTTCGGCAAAAAA TCCACCACGTACTCTGCC CCAC GGTAGAGTTCGGAGTGGC CCTTCTGACGACCAA TERM 5239 4066363 - 4066326 - G 81 -10.5 -3.60048 | opp_overlap 4066324, overlap 4066325 TTTTCGGCAAAAAAT CCACCACGTACTCTGCC CCAC GGTAGAGTTCGGAGTGG CCCTTCTGACGACCA TERM 5240 4066529 - 4066506 - H 100 -14.6 -5.40072 | overlap 4066508 CTGCTCCTAAAAAAA TCCCCGCACC CTGG GGTGCGGGAA ACACCGGAAATACTG TERM 5241 4066527 - 4066508 - H 93 -15 -2.89655 | overlap 4066506 GCTCCTAAAAAAATC CCCGCACC CTGG GGTGCGGG AAACACCGGAAATAC CJA_3393 4066894 - 4067127 + | hypothetical protein TERM 5242 4067852 - 4067838 - g 72 -7 -4.18197 | ATCCGCGATGTAAAA GGCCAG TGG CAGGCC AAGCGGGCCCTCGAA TERM 5243 4068520 - 4068493 - g 100 -14 -3.72576 | overlap 4068472 CCCGGGTCGAGCAAA CCCGGTCGCGCC AACT GGCGCGCCAGGG CAAAACCAACAGCCA CJA_3394 4067142 - 4068755 + | Mg chelatase homolog CJA_3395 4070472 - 4068757 - | EAL domain protein TERM 5244 4069906 - 4069884 - G 91 -12.8 -3.85698 | GCCGCTCCGCACAAA TGCGGATGAT GGC ATCACCCGCA TCATGGCCAAAGTTG TERM 5245 4072076 - 4072039 - g 85 -3.4 -5.41143 | gap 1 CATTCCCGAAAAAAA CCTTGAGCGACTGCAGC GATTT GC-GCACTGGTTCAAGG GCATTATCCAACAGG TERM 5246 4072679 - 4072695 + G 72 -5.1 -4.56702 | opp_overlap 4072678, overlap 4072680 AAAGGTGAGGAAACC CTGAGCA ACC TGCTCAA TTTGTTTGATTAACG rep 4070690 - 4072708 + | ATP-dependent DNA helicase Rep TERM 5247 4072772 - 4072745 - T 73 -10.6 -3.07291 | opp_overlap 4072752, overlap 4072752 AATTAGGGCAGCGAA CGAAAAAGGCGC CGAA GCGCCTTTCTGG AAAACGGCGGGACTT TERM 5248 4072765 - 4072752 - T 100 -9.5 -4.88407 | opp_overlap 4072752, overlap 4072745 GCAGCGAACGAAAAA GGCGC CGAA GCGCC TTTCTGGAAAACGGC TERM 5249 4072752 - 4072765 + T 80 -9.5 -3.85698 | opp_overlap 4072745 4072752 GCAGCGAACGAAAAA GGCGC CGAA GCGCC TTTCTGGAAAACGGC CJA_3397 4073249 - 4072809 - | Cytochrome c5 TERM 5250 4074388 - 4074356 - g 80 -12 -3.36289 | overlap 4074357 GACTACCGCAACGAA TGGTTGCGCCTGAT CAACT ATCTGGCGCAACCG GCCGAGGCTGGCGAG TERM 5251 4074387 - 4074357 - g 95 -15.5 -2.61452 | overlap 4074356 ACTACCGCAACGAAT GGTTGCGCCTGAT CAACT ATCTGGCGCAACC GGCCGAGGCTGGCGA TERM 5252 4075428 - 4075412 - g 72 -10.9 -3.1211 | opp_overlap 4075410 4075412 GAGTACATCAGCGAA TTGAGCG GCA CGCTCAA TGTTGTCAGTGCACC TERM 5253 4075412 - 4075428 + G 74 -10.9 -3.24924 | opp_overlap 4075412, overlap 4075410 GAGTACATCAGCGAA TTGAGCG GCA CGCTCAA TGTTGTCAGTGCACC prsK 4073447 - 4075504 + | putative PEP-CTERM system histidine kinase prsR 4075501 - 4076895 + | putative PEP-CTERM system response regulator CJA_3400 4077045 - 4076905 - | hypothetical protein CJA_3401 4077350 - 4077240 - | hypothetical protein CJA_3402 4077157 - 4077900 + | putative lipoprotein TERM 5254 4078143 - 4078131 - fH 71 -3.5 -4.74453 | CAACATATTGAAAAA TAAAA TAT TTTTA ACAGTGGCAAGACTA CJA_3403 4078218 - 4078958 + | PEP-CTERM putative exosortase interaction domain protein TERM 5255 4078972 - 4079005 + F 76 -9.1 -3.68222 | gap 1, opp_overlap 4078980, overlap 4078980 AAAACCAGCGCGCGA TATAAAAAGCCGGC TACAAAT GCCGGCTTTTT-TA TTGTTAGCCTTAAAG TERM 5256 4078980 - 4078998 + F 100 -8.8 -5.64873 | opp_overlap 4078980, overlap 4078972 CGCGCGATATAAAAA GCCGGC TACAAAT GCCGGC TTTTTTATTGTTAGC TERM 5257 4078998 - 4078980 - f 100 -8.8 -4.96848 | opp_overlap 4078980 4078972 CGCGCGATATAAAAA GCCGGC TACAAAT GCCGGC TTTTTTATTGTTAGC CJA_3404 4079167 - 4080546 + | eight transmembrane protein EpsH (proposed exosortase) TERM 5258 4081111 - 4081131 + G 76 -9 -3.8372 | gap 1, opp_overlap 4081105 TGAAAACCACATGCG CCG-CCTGG AAAC CCAGGTCGG TTCTATTGTTGGAGT gt2M 4080557 - 4081696 + | glycosyl transferase, putative, gt2M cAPK 4081708 - 4083057 + | capK related-protein gt2I 4083045 - 4083959 + | glycosyl transferase, putative, gt2I TERM 5259 4084020 - 4084002 - g 72 -4.4 -4.68424 | overlap 4084004 GAATCGATTGAAAAA TTGGGCGG TTT CCGCCTGA TGCAATGGCGATACA pda4E 4083960 - 4084964 + | polysaccharide deacetylase protein, putative, pda4E CJA_3409 4085014 - 4086669 + | hypothetical protein TERM 5260 4086777 - 4086759 - g 85 -6.6 -4.82855 | opp_overlap 4086759 4086761, overlap 4086761 CAGCAAATGCAAAAA CAGGGGGA ATT TACCCCCG TTGTCGGCTGCATAG TERM 5261 4086776 - 4086761 - g 74 -7.5 -4.02139 | opp_overlap 4086759 4086761, overlap 4086759 GCAAATGCAAAAACA GGGGG AATTTA CCCCC GTTGTCGGCTGCATA TERM 5262 4087063 - 4087085 + G 70 -4.8 -4.44245 | CGTTGAAAACCAGGG CCATGATTCG CCT CGAAAAATGG TTTTATCACTGGTAT gt4B 4086666 - 4087796 + | glycosyl transferase, putative, gt4B TERM 5263 4087888 - 4087924 + G 95 -15.3 -3.09635 | opp_overlap 4087898 AGTTGCAGTTGATCG GCTTGATAGAGCGCC TTGACCC GGCGCTCTATCAACC TTACCTGCTCACCAT gt4A 4087875 - 4088909 + | glycosyl transferase, putative, gt4A TERM 5264 4089598 - 4089620 + G 74 -2.6 -5.0917 | overlap 4089593 CTCACGCACGGGTTA TGTAGCCATT GTT ATTGGCAGCA TTTATTTTTTCATGA CJA_3412 4088906 - 4090195 + | O-antigen polymerase family protein TERM 5265 4090475 - 4090448 - g 74 -6.2 -4.56597 | TGTTTCTGGGAAAAA CCGTATTCGTGG ATGC CCACAATTCCGG GATATACCCTGCAGA TERM 5266 4090791 - 4090780 - g 74 -3 -4.98616 | GGAAAATACCAAAAA GTTA TCCA TAAC ACACAGATTTCCGCT CJA_3413 4090258 - 4091184 + | glycosyl transferase, group 1 family protein domain protein CJA_3414 4091305 - 4092378 + | hypothetical protein CJA_3415 4093746 - 4092553 - | hypothetical protein gt2L 4094656 - 4093736 - | glycosyl transferase, putative, gt2L TERM 5267 4094420 - 4094397 - G 79 -3.8 -5.08824 | TCCGCATCTAAAAAA GCAAGCCATT CCCC ATCAGCTTGC CTACACCCAAAATTT CJA_3417 4096189 - 4094660 - | polysaccharide biosynthesis family protein TERM 5268 4094897 - 4094887 - G 72 -6.8 -4.28762 | opp_overlap 4094887 AGAAGCGTACCAAAA GCTC AAA GAGC TCTAATTCAACATAC TERM 5269 4095910 - 4095892 - G 79 -2.4 -5.1963 | overlap 4095893 4095899 TCGAAGCAAGAAAAA CCAATACT CCA AGAATTGA ATAAATGACCAGCGC CJA_3418 4097208 - 4096186 - | hypothetical protein CJA_3419 4099848 - 4097221 - | TPR domain protein TERM 5270 4099500 - 4099518 + g 70 -6 -4.29106 | opp_overlap 4099502 GGTAATTGTTGATAG TATCGATC ACC GAACGATA TTTCTTGGTATGCAA CJA_3420 4101187 - 4099892 - | hypothetical protein CJA_3421 4100129 - 4100242 + | hypothetical protein CJA_3422 4102031 - 4101243 - | putative polysaccharide biosynthesis protein CJA_3423 4103558 - 4102041 - | polysaccharide chain length determinant protein TERM 5271 4102296 - 4102284 - G 73 -9.1 -3.6279 | AAAGGGCGCTAATAA CCCCA GGA TGGGG CCAAGCACAGCAAAA TERM 5272 4102340 - 4102321 - G 79 -5 -4.89562 | overlap 4102327 GCAAAATGAATAAAA CTTAAACC TGAC GGTTTCAG AGGAAAACTGGCGGG TERM 5273 4103464 - 4103443 - G 70 -10.9 -2.70525 | overlap 4103442 TTCGGCCAAATCAAT CCTACACCG AGAG CGGTATAGG CAATCCCGATAAAAA CJA_3424 4104214 - 4103621 - | Polysaccharide biosynthesis/export protein lthA 4105654 - 4104275 - | Bacterial sugar transferase TERM 5274 4104509 - 4104477 - G 71 -2.8 -4.85599 | gap 1, overlap 4104507 CGCATTTCATAAAAA GGAATTTGCCTGGAA AGAT CTGC-GACAAATTCC GGCCGCTCCGGCCTT TERM 5275 4104636 - 4104653 + g 71 -3.4 -4.84359 | gap 1, overlap 4104636 4104637 CGTGCATCATTTTTC TG-CGCC CACAT GGCGCCA TTTTTCTCCGCATCC TERM 5276 4104825 - 4104812 - G 82 -2.3 -5.33785 | AAGTACCAGAAAAAA CACAG ATGC CAGTG CGATATCAAATAGTC TERM 5277 4105429 - 4105416 - G 74 -2.3 -5.05606 | CCCAATAAAAAGAAA CTCAC CAGG GTGCG CAATACCATGCTGGA TERM 5278 4106435 - 4106415 - g 85 -14 -2.78762 | opp_overlap 4106407, overlap 4106410 ACATTACCAAGATTA CCTCCGGC TCAAC GCCGGAGG TTGCCGAGTATATCG TERM 5279 4106567 - 4106536 - g 85 -10.2 -4.20106 | opp_overlap 4106542, overlap 4106539 AAAGGTCATCGAAAA TACCCAGCGCGATA TCAA TATCGCCCTGGTTA ACGAGCTGGCCCTGA TERM 5280 4106564 - 4106539 - g 73 -11.9 -2.81208 | opp_overlap 4106542, overlap 4106536 GGTCATCGAAAATAC CCAGCGCGATA TCAA TATCGCCCTGG TTAACGAGCTGGCCC CJA_3426 4105904 - 4107178 + | polysaccharide biosynthesis protein CJA_3427 4107197 - 4108204 + | NAD dependent epimerase/dehydratase family superfamily TERM 5281 4108809 - 4108824 + G 78 -8.2 -4.17762 | opp_overlap 4108806 GGGGACAATCCATAC CCGCTG CCGG CGGCGG TTATTTTCGCCAATA pda4C 4108262 - 4109128 + | polysaccharide deacetylase, putative, pda4C TERM 5282 4109443 - 4109466 + F 73 -10.2 -3.06133 | gap 1 ATACAATTCTTTCAA GCCGACGCCGC TTC GCGGAG-CGGC TTAACTCAGGCGTTA TERM 5283 4110021 - 4110009 - f 82 -2.6 -5.55769 | overlap 4110010 4110011 GTCTATAACAAAAAA CGGC GGCAT ACCG CAATTAGAAATACTT TERM 5284 4110782 - 4110770 - g 91 -3.3 -5.4833 | GCATTCAATAAAAAA GCTAG CCA CTTGC CTTACAAGAATTTCT CJA_3430 4110099 - 4110875 + | putative lipoprotein TERM 5285 4110888 - 4110914 + T 88 -12.2 -3.57561 | opp_overlap 4110886 4110885, overlap 4110890 TAACATTTCAAAGCC CTCGGACGCAGC AAG GCTGCGTCGGTG TTTGAGGCGTTAGGC TERM 5286 4110890 - 4110912 + T 86 -13.4 -3.36569 | opp_overlap 4110886 4110885, overlap 4110888 ACATTTCAAAGCCCT CGGACGCAGC AAG GCTGCGTCGG TGTTTGAGGCGTTAG TERM 5287 4111528 - 4111508 - T 93 -9 -4.88736 | gap 1, opp_overlap 4111508 GATTATTTACAAAAA GCCGCC-CA TAGT TGAGGCGGC TTTTTCTGGTCAATC TERM 5288 4111508 - 4111528 + T 100 -9 -4.9218 | gap 1, opp_overlap 4111508 GATTATTTACAAAAA GCCGCC-CA TAGT TGAGGCGGC TTTTTCTGGTCAATC CJA_3431 4112424 - 4111699 - | antirepressor protein CJA_3432 4112602 - 4112895 + | hypothetical protein TERM 5289 4113109 - 4113091 - g 80 -11.6 -3.32294 | opp_overlap 4113082, overlap 4113081 CGAAAGCCTTTACAA GGCGCTGG CAC CCGGCGCC AAGCCACGGTTTGAT CJA_3433 4112897 - 4113181 + | transcriptional regulator, Cro/CI family TERM 5290 4113229 - 4113245 + F 100 -10.8 -5.42259 | CCATAGCTCACCCCA GGCCGC CTCTT GCGGCC TTTTTTTCGCCCTCC TERM 5291 4113327 - 4113351 + F 89 -9.2 -4.58663 | overlap 4113307 CAGTCGGCCCCCCGC CCCACCCGCG CTCTT TGCGTGTGGG TTTTTACGCACTCCT TERM 5292 4113503 - 4113481 - f 70 -9.1 -3.40403 | opp_overlap 4113485 GGGGTGCGAGGACAA GGGGTCTCG TGATG CGAGATCCC TTCAGGATGGCCACC TERM 5293 4113644 - 4113624 - f 70 -9.7 -3.10715 | TCGATCACCACTTAA TGGCCTCGC CTC ACGAGACCA TAAGTAACAACAGGC TERM 5294 4115021 - 4114996 - g 74 -8.9 -3.85817 | ATCGTTGTCGATAAA TCCACCGTCCC TGTC GGCACGGGGGA CAAGGTACAGGCTCA CJA_3434 4114639 - 4115967 + | UDP-glucose dehydrogenase TERM 5295 4116013 - 4116027 + G 75 -7 -4.36596 | overlap 4116014 4116015 ATGAAGATTCTTGTT ACCGGC GGC GCCGGG TTTATTGGTTCTGCC TERM 5296 4116014 - 4116026 + G 74 -10.5 -3.21235 | overlap 4116013 4116015 TGAAGATTCTTGTTA CCGGC GGC GCCGG GTTTATTGGTTCTGC TERM 5297 4116366 - 4116348 - g 88 -8.8 -4.63527 | opp_overlap 4116353, overlap 4116349 4116350 GGACTATTGGAAAAA CCTGCCGG AAG CCGGCAAA GCCGCTTTCCGTTTT TERM 5298 4116365 - 4116349 - g 72 -10.1 -3.37634 | opp_overlap 4116353, overlap 4116348 4116350 GACTATTGGAAAAAC CTGCCGG AAG CCGGCAA AGCCGCTTTCCGTTT TERM 5299 4116364 - 4116350 - g 73 -11.4 -2.62098 | opp_overlap 4116353, overlap 4116349 4116348 ACTATTGGAAAAACC TGCCGG AAG CCGGCA AAGCCGCTTTCCGTT TERM 5300 4116353 - 4116377 + G 95 -12.1 -4.13728 | opp_overlap 4116350 4116349 4116348 ATTGGAAAAACCTGC CGGAAGCCGGC AAA GCCGCTTTCCG TTTTCACCATATATC rfbB 4115998 - 4117068 + | dTDP-glucose 4,6-dehydratase TERM 5301 4117523 - 4117507 - g 77 -12.3 -2.74012 | TTACCACGTCAATGA CCCCGAA CGT TTCGGGG TAGTCGAGTTCGACG rfbA 4117091 - 4117966 + | glucose-1-phosphate thymidylyltransferase TERM 5302 4118580 - 4118570 - g 74 -2.4 -5.10968 | overlap 4118571 ATCAATACATAAAAA CCGG CGA CCTG CCATGGGGAACCTAC rfbD 4117963 - 4118844 + | dTDP-4-dehydrorhamnose reductase rfbC 4118853 - 4119401 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 5303 4119829 - 4119839 + G 79 -2.6 -5.26918 | CAGAATGGCTATGGC TAAT ACC ATTA TTTTTTGTACAATAT wzm 4119420 - 4120193 + | Wzm wzt 4120190 - 4120894 + | Wzt TERM 5304 4122639 - 4122620 - g 70 -3.5 -4.62302 | overlap 4122621 GAAGATGGGCAAAAA GCTCTGG CTGGTT CCAGAGG CAAAACTGTGGCACC gt2G 4120977 - 4122782 + | glycosyl transferase, putative, gt2G gt4C 4122789 - 4124012 + | glycosyl transferase, putative, gt4C CJA_3443 4124026 - 4125186 + | hypothetical protein CJA_3444 4125389 - 4126528 + | hypothetical protein CJA_3445 4126525 - 4129143 + | Capsule polysaccharide biosynthesis protein family CJA_3446 4131458 - 4131318 - | hypothetical protein TERM 5305 4131385 - 4131369 - Gg 72 -7.9 -3.88618 | overlap 4131380 AATATAACCACCAAA GCCACCA CAA CGGCGGC TAAAACTTCCGCTGC TERM 5306 4132334 - 4132357 + GH 82 -9 -4.15222 | TCTGCTTGCCCCTTA TCATCAGGAA AAGC TTCTTGATGA TTTATTAGAGCGAAT CJA_3447 4129137 - 4132577 + | hypothetical protein TERM 5307 4132731 - 4132714 - g 74 -2.1 -5.05782 | gap 1, opp_overlap 4132720, overlap 4132721 ACTGACGGTAAAAAA TCAATCAG ACT CT-ATTGA GTCAATTCTGAAAAA CJA_3448 4132670 - 4133488 + | glycosyl transferase, group 2 family protein TERM 5308 4134525 - 4134541 + G 71 -2.2 -4.96276 | overlap 4134527 CGCTGCCAGAACATT TATCGG TACAT CCGGTG TTTTGCTTTTTTTCT CJA_3449 4133524 - 4135008 + | putative GtrC gt2E 4135046 - 4137100 + | glycosyl transferase, putative, gt2E TERM 5309 4137721 - 4137733 + G 82 -7.7 -4.44974 | AAATGCAACACGATC TGGGT GAT ACCCA TTTTATGGCCTTTGG gt2D 4137090 - 4137989 + | glycosyl transferase, putative, gt2D TERM 5310 4138188 - 4138166 - T 77 -11.4 -3.24188 | opp_overlap 4138172, overlap 4138172 CCAGATTATCAGCAA CACCAATGAC ATC GTCATTAGTG GATGGGCTTTTAATA gt2C 4139509 - 4138514 - | glycosyl transferase, putative, gt2C TERM 5311 4138786 - 4138796 + g 79 -2.6 -5.27335 | AAATTCGTTTAATCG TATT CTT AATA TTTTTCTTTAAAAAC TERM 5312 4139356 - 4139343 - G 70 -4.5 -4.55295 | TTCTGGATAAATAAA CCAGA ACCA TCCGG GCAACAGTCATCAAC CJA_3453 4141359 - 4139512 - | hypothetical protein TERM 5313 4140224 - 4140208 - G 81 -12.3 -3.24188 | GGATACTACCAGCAA GGTTGCC CTA GGCAACC AATCCAAATGTGCAC gt2B 4142198 - 4141365 - | glycosyl transferase, putative, gt2B CJA_3455 4144211 - 4142202 - | WbgZ TERM 5314 4144085 - 4144066 - G 71 -9.4 -3.52316 | opp_overlap 4144070, overlap 4144062 GCCAGATAGAACGAA GACACTAT CGCA ATAGTGTC ATAACAAACCGATAT wbjF 4145217 - 4144324 - | NAD dependent epimerase/dehydratase-like protein wbpL 4146251 - 4145214 - | Glycosyl transferase group 4-like protein CJA_3458 4146511 - 4146332 - | hypothetical protein TERM 5315 4146406 - 4146416 + g 72 -6.8 -4.18018 | CTGCAGCGACACTCA GGAG CAA CTCC TTTTCCATGAACGCC CJA_3459 4146618 - 4147733 + | GGDEF domain protein TERM 5316 4147790 - 4147765 - T 100 -17.7 -4.72272 | opp_overlap 4147765 4147770, overlap 4147770 CGCGCGCAGGAAAAA CAAAACCCCGC ATAA GCGGGGTTTTG TTTCATTCTATTTAA TERM 5317 4147765 - 4147790 + T 100 -17.7 -4.11501 | opp_overlap 4147765 4147770, overlap 4147770 CGCGCGCAGGAAAAA CAAAACCCCGC ATAA GCGGGGTTTTG TTTCATTCTATTTAA TERM 5318 4147770 - 4147785 + T 100 -11.8 -5.02357 | opp_overlap 4147770 4147765, overlap 4147765 GCAGGAAAAACAAAA CCCCGC ATAA GCGGGG TTTTGTTTCATTCTA TERM 5319 4147785 - 4147770 - T 100 -11.8 -5.3104 | opp_overlap 4147765 4147770, overlap 4147765 GCAGGAAAAACAAAA CCCCGC ATAA GCGGGG TTTTGTTTCATTCTA CJA_3460 4150236 - 4147822 - | hypothetical protein CJA_3461 4151820 - 4150504 - | efflux ABC transporter, permease protein TERM 5320 4150803 - 4150844 + g 78 -10.8 -3.50853 | gap 1 GGGCACGCAGTATGG CCAGCTCGC-GGCGGCGTT CGCCC ATCGCCGCCAGCAAACTGG TTGTCATTCCCAGCA CJA_3462 4152554 - 4151820 - | ABC transporter, ATP-binding protein TERM 5321 4152471 - 4152444 - G 77 -9.8 -3.59979 | CGCCGCCAGGGTAAA TGCCGGGATACT CAGC AGTGGCCCGGCA CCGGGCTGCCAATGA TERM 5322 4152867 - 4152857 - g 72 -6.8 -4.18197 | ACGCCCCAGCGAAAA GCTC ACC GAGC AACTGAGCCAACAGA CJA_3463 4152630 - 4153301 + | hypothetical protein CJA_3464 4154336 - 4153311 - | putative cobalamin synthesis protein TERM 5323 4153806 - 4153789 - G 70 -5.5 -4.4261 | opp_overlap 4153781 TGGCTAACAGCAAAA GCCGC TGCTTTGG GCGGC TGGAAACTGGTCGCC CJA_3465 4155632 - 4154415 - | predicted GTPase TERM 5324 4158820 - 4158807 - g 70 -3.8 -4.59773 | opp_overlap 4158807 TGCTACCGCGAAAAA CCAG TCAAAC CTGG TGCTTTGGTACAACG CJA_3466 4156093 - 4159152 + | putative TonB-dependent receptor TERM 5325 4159198 - 4159183 - f 95 -11.8 -3.93061 | opp_overlap 4159183, overlap 4159177 ATGCCAAAACGTAAA GGGCGG ATTT CCGCCC TTTTTTCCAGTGTTC TERM 5326 4159183 - 4159198 + F 100 -11.8 -5.09173 | opp_overlap 4159177 4159183 ATGCCAAAACGTAAA GGGCGG ATTT CCGCCC TTTTTTCCAGTGTTC TERM 5327 4159501 - 4159522 + G 74 -2.2 -5.10497 | gap 1, overlap 4159503 4159504 GTATAGATTTTAACG GCTGGTGGC AACAG GACACC-GC TTTTTTCCATCCCTT TERM 5328 4160653 - 4160638 - g 78 -5.4 -4.75472 | overlap 4160639 TGCATACCAACAAAA CCCTGA TTAT TCAGGA GTTACAGCAAATGCG CJA_3467 4159248 - 4160771 + | tryptophan halogenase TERM 5329 4160873 - 4160884 + G 71 -3 -4.78572 | overlap 4160872 TGATTCGGCGATGGC TACT GTGT AGTA TTTTCTTGCTTCCCA CJA_3468 4160842 - 4162080 + | Bacterial extracellular solute-binding protein TERM 5330 4162731 - 4162751 + G 77 -6.9 -4.57837 | opp_overlap 4162721 AGATACGCTGGGGGA TAGCGCA CGGGAAC TGCGCTA TTTTTGGAAAAATAT CJA_3469 4162105 - 4164108 + | product exhibits features of a methyl-accepting chemotaxis protein TERM 5331 4164209 - 4164183 - T 100 -11.5 -5.28683 | gap 1 ACCAACACTAAAAAA CCCCCGG-ACGG TTAC CCGAGCCGGGGG AAGAGGGAGGGATGC man5C 4166742 - 4164250 - | endo-1, 4-beta mannanase, man5C TERM 5332 4166725 - 4166706 - G 87 -4.9 -5.30348 | overlap 4166707 AGCCAATAACAAAAA GCCCCGT CAGAAT ACGGGGA GAGATAAGGTGTTTC TERM 5333 4166724 - 4166707 - G 72 -8.4 -3.76582 | overlap 4166706 GCCAATAACAAAAAG CCCCGT CAGAAT ACGGGG AGAGATAAGGTGTTT CJA_3471 4167197 - 4167090 - | hypothetical protein CJA_3472 4168822 - 4167284 - | GGDEF domain protein CJA_3473 4169102 - 4168989 - | hypothetical protein TERM 5334 4169058 - 4169075 + g 88 -10.5 -4.13767 | opp_overlap 4169046 4169058 ACTGCCATAAAAAAA CCCGCCG GGTC TGGCGGG TTTTACCATGAGCCA TERM 5335 4169075 - 4169058 - G 100 -9.8 -5.61596 | opp_overlap 4169058, overlap 4169046 ACTGCCATAAAAAAA CCCGCC GGGTCT GGCGGG TTTTACCATGAGCCA dsbA 4169749 - 4169099 - | DsbA TERM 5336 4169934 - 4169882 - g 100 -23.2 -3.30124 | gap 1, opp_overlap 4169900, overlap 4169900 GTCCAGCCCTGATAA TCC-CCGCTCAATAAAAAAGGCGAC TTGA GTCGCCTTTTTTATTGAGCAGTAGA GAACCCAAGAGATTA CJA_3475 4169784 - 4169909 + | hypothetical protein TERM 5337 4169900 - 4169915 + T 100 -10.4 -5.4505 | opp_overlap 4169882 4169900 CCGCTCAATAAAAAA GGCGAC TTGA GTCGCC TTTTTTATTGAGCAG TERM 5338 4169915 - 4169900 - T 100 -10.4 -5.4505 | opp_overlap 4169900, overlap 4169882 CCGCTCAATAAAAAA GGCGAC TTGA GTCGCC TTTTTTATTGAGCAG CJA_3476 4170630 - 4169947 - | cytochrome c4 TERM 5339 4170801 - 4170812 + G 71 -2.2 -5.00616 | gap 1, opp_overlap 4170808, overlap 4170792 CACCCCCATCGCCTT CG-GC AAA GCTCG TTTTTTAACCAGCGC CJA_3477 4170781 - 4171440 + | putative GTPase, involved in coordination of cell cycle (EngB) TERM 5340 4171470 - 4171447 - T 100 -10.4 -5.96219 | overlap 4171466 GAGGGATAAAAAAAA TCCGATGATT GGAT AATCACCGGA TCAAAGAACTGGCAC TERM 5341 4171502 - 4171479 - T 74 -8.2 -4.00756 | overlap 4171466 CACCGGATCAAAGAA CTGGCACT CTTGGGGT AGTGCCAG ATGGGCAAAGCAGAA TERM 5342 4171655 - 4171671 + T 85 -13.7 -3.07113 | opp_overlap 4171655, overlap 4171670 TTAGGGCAAAAAAAA CCCCGAC AAG GTCGGGG TTGGCTACGCTGATC TERM 5343 4171671 - 4171655 - T 100 -13.7 -5.78622 | opp_overlap 4171655 4171670 TTAGGGCAAAAAAAA CCCCGAC AAG GTCGGGG TTGGCTACGCTGATC CJA_3478 4174662 - 4171849 - | DNA polymerase I TERM 5344 4171987 - 4172010 + g 70 -6 -4.18018 | opp_overlap 4171986 GACTTCCAACACCAG CTCGTCATGC ACCT GCATAATGAG TTTTGCATCCAGCCC TERM 5345 4172049 - 4172063 + g 70 -5.6 -4.33274 | CCAACCAGTTATCCA CGGCAA TCA TGGCCG TTTTGATAATGTCAG TERM 5346 4172809 - 4172831 + g 75 -5.5 -4.71426 | overlap 4172812 CAGCACTTCTTCTGC CGTCGACGG TGTCC CTGTCGGTG TTTTCTTGATAACCG TERM 5347 4172892 - 4172871 - G 71 -3 -4.87133 | overlap 4172872 4172874 ATTGCTCAAATAAAA TCACCC CCAATTGTTT GGGTGA GCTCAGGTTAAATTC CJA_3479 4175000 - 4175257 + | hypothetical protein TERM 5348 4175267 - 4175298 + F 100 -10.9 -5.28778 | gap 1 ATCTAATCCAACCCT TAGCCTCGCCCGGC TCATT GCCG-GCGGGGTTA TTTTTTATACATCCT CJA_3481 4175576 - 4175860 + | hypothetical protein CJA_3480 4176793 - 4175837 - | high-affinity zinc uptake system protein ZnuA TERM 5349 4176802 - 4176773 - G 81 -8.8 -4.36914 | opp_overlap 4176773 4176778 GGGCCGGTTATAAAA TGAAAGGTTATA GAGTAA CATAACCTTTCA TTTCCCGGATTCCTA np20 4176827 - 4177330 + | transcriptional regulator np20 TERM 5350 4177687 - 4177708 + GF 70 -3.6 -4.63218 | overlap 4177688 CCGATGCAGTCCCTC TCCGGTGG CGAAAC CCAGCGGG TTTTATTGGCGCGCG TERM 5351 4177840 - 4177822 - gf 70 -8.8 -3.46647 | opp_overlap 4177838, overlap 4177820 4177827 CTGATCCATGAAATA CGCAATCG CCG CGGTTGCG GAGTGCTGCTAGTGT znuC 4177297 - 4178097 + | zinc ABC transporter, ATP-binding protein ZnuC znuB 4178069 - 4178884 + | permease of ABC zinc transporter ZnuB CJA_3485 4179003 - 4179248 + | hypothetical protein TERM 5352 4179271 - 4179252 - f 100 -13.6 -3.79909 | opp_overlap 4179252 4179254 GTAAATCATTAATAA CACCCCTG GCAA CAGGGGTG TCCTGTCACTGAATC TERM 5353 4179252 - 4179271 + F 83 -13.6 -2.64933 | opp_overlap 4179252, overlap 4179254 GTAAATCATTAATAA CACCCCTG GCAA CAGGGGTG TCCTGTCACTGAATC TERM 5354 4179254 - 4179269 + F 72 -10.4 -2.8655 | opp_overlap 4179252, overlap 4179252 AAATCATTAATAACA CCCCTG GCAA CAGGGG TGTCCTGTCACTGAA CJA_3486 4179315 - 4180226 + | Metallo-phosphoesterase TERM 5355 4180457 - 4180481 + T 100 -15.8 -3.39717 | AACCCGTTTTGCTTT CACCGGAGAC ATCCA GTCTCCGGTG TTCCTCTTCATCCAT CJA_3487 4181282 - 4180518 - | putative integral membrane protein CJA_3488 4181692 - 4181279 - | thioesterase family protein domain protein CJA_3489 4182494 - 4181712 - | hydratase/decarboxylase family protein TERM 5356 4182570 - 4182542 - R 71 -7.4 -3.87075 | opp_overlap 4182549 4182550, overlap 4182531 4182545 4182550 ACCAGGGGCCATAAA GCACCAAACCCC GGAAA GGGGCTTGGTAT GGGGTAACGCGGGTC TERM 5357 4182567 - 4182545 - R 75 -11.3 -3.01125 | opp_overlap 4182549 4182550, overlap 4182531 4182542 4182550 AGGGGCCATAAAGCA CCAAACCCC GGAAA GGGGCTTGG TATGGGGTAACGCGG CJA_3490 4183996 - 4182590 - | PA5346-like protein CJA_3491 4186313 - 4184175 - | ATP-dependent DNA helicase RecG CJA_3492 4187209 - 4186289 - | transcriptional regulator, LysR family TERM 5358 4186897 - 4186886 - G 70 -5.8 -4.19371 | CAAATGGGGAATAAA CTGC GGCA GCAG ATAGGGGCCAATTGT TERM 5359 4187489 - 4187461 - g 75 -11.7 -2.87132 | opp_overlap 4187461, overlap 4187466 CGCTGGCGCTATAGA TCACATCCTGGCG CAA CACCCGGACGTGA TTGTGATTAGCATGA CJA_3493 4187276 - 4188142 + | hypothetical protein TERM 5360 4188183 - 4188202 + T 100 -13.6 -5.30616 | opp_overlap 4188173 AAAATCGGTCACTCA CGGCACTG CTCG CAGTGCCG TTTTTATTTGAGTCC TERM 5361 4188222 - 4188248 + T 73 -10.9 -2.52464 | opp_overlap 4188227, overlap 4188227 TATTTGAGTCCAATA AAAAACCCGGC ATTAC GCCGGGTTTTG TCGCTTAAAACAGCA TERM 5362 4188227 - 4188243 + T 93 -10.8 -4.4715 | opp_overlap 4188227, overlap 4188222 GAGTCCAATAAAAAA CCCGGC ATTAC GCCGGG TTTTGTCGCTTAAAA TERM 5363 4188243 - 4188227 - T 100 -11.5 -5.46657 | opp_overlap 4188227 4188222 GAGTCCAATAAAAAA CCCGGCA TTA CGCCGGG TTTTGTCGCTTAAAA oprF 4189314 - 4188265 - | OmpA domain protein trmB 4190164 - 4189472 - | tRNA (guanine-N(7)-)-methyltransferase CJA_3496 4190639 - 4190253 - | hypothetical protein TERM 5364 4190677 - 4190696 + r 100 -15 -3.54424 | opp_overlap 4190677 GCCAGGAAATAAAAA GGCCGCGT AACG ACGCGGCC TTTCGAGAAATAGAA TERM 5365 4190696 - 4190677 - R 100 -15 -5.33405 | opp_overlap 4190677 GCCAGGAAATAAAAA GGCCGCGT AACG ACGCGGCC TTTCGAGAAATAGAA rpoH 4191582 - 4190722 - | alternative sigma factor RpoH ftsX 4192782 - 4191682 - | cell division protein FtsX TERM 5366 4192221 - 4192234 + g 76 -3.7 -4.94058 | opp_overlap 4192221 GTTTAACCAGCAATA CACCC GGCA GGGGG TTTTCTTTGAGTTGA ftsE 4193447 - 4192779 - | cell division ABC transporter, ATP-binding protein FtsE ftsY 4194584 - 4193460 - | signal recognition particle receptor FtsY TERM 5367 4195176 - 4195196 + G 83 -9.7 -4.04206 | TGGAACAGGGACACT GGCTGGC AGAGGAC GCCAGCC TTTATATAGAAATGC CJA_3501 4194713 - 4195330 + | putative methyltransferase CJA_3502 4195960 - 4195331 - | hypothetical protein coaD 4196164 - 4196694 + | pantetheine-phosphate adenylyltransferase CJA_3504 4197175 - 4196747 - | transglycosylase associated gene mutM 4197947 - 4197135 - | formamidopyrimidine-DNA glycosylase TERM 5368 4197346 - 4197336 - GR 72 -6.8 -4.1891 | overlap 4197344 GCGCTGCAAGACAAA GCGA ATA TCGC GCACCAGGTCCTCGC CJA_3506 4198231 - 4198139 - | hypothetical protein CJA_3507 4198234 - 4198866 + | PEP-CTERM putative exosortase interaction domain protein TERM 5369 4198889 - 4198903 + T 100 -8.5 -5.64274 | opp_overlap 4198889 TTCCCCACAAAAAAA CCGCC TTAAC GGCGG TTTTTTTGTGGGTAC TERM 5370 4198903 - 4198889 - T 100 -8.5 -5.60993 | opp_overlap 4198889 TTCCCCACAAAAAAA CCGCC TTAAC GGCGG TTTTTTTGTGGGTAC CJA_3508 4199781 - 4198936 - | hypothetical protein CJA_3509 4200112 - 4199783 - | hypothetical protein TERM 5371 4199898 - 4199875 - G 79 -3.9 -5.06414 | gap 1, overlap 4199876 4199878 GCGGGCCAATAAAAA TTACGGCGCG CGCGC CGC-CCATAA TGACTTTTTCACGAT CJA_3510 4201520 - 4200105 - | probable two-component sensor TERM 5372 4200758 - 4200768 + g 70 -6.8 -4.11692 | GAGCAGGCTGTAACT CCTG CAT CAGG TTTTCGCAGTGAATA TERM 5373 4201353 - 4201328 - G 79 -9.7 -3.76107 | gap 1, overlap 4201322 AGGGAAAAACCATAA CCGCATCGCCTG TTA CAGACG-CGCGG GGAGGCAACGTATAG CJA_3511 4202176 - 4201517 - | Response regulator receiver domain protein TERM 5374 4202101 - 4202153 + gH 93 -15.1 -3.05844 | opp_overlap 4202106, overlap 4202106 TGGATAAGTTAACTG CGA-AACCGGCTCGCTTGAGGGCAT TCATC ATGCCTTC-GGCGAGCAGGTTATCG TCTTCCACTAACAAA TERM 5375 4202106 - 4202147 + gH 95 -13.8 -3.52341 | gap 1, opp_overlap 4202106, overlap 4202101 AAGTTAACTGCGAAA CCGGCTCGCTTGAGGGCAT TCATC ATGCCTTC-GGCGAGCAGG TTATCGTCTTCCACT TERM 5376 4202147 - 4202106 - GH 73 -9.4 -3.61536 | gap 1, opp_overlap 4202106 4202101 AAGTTAACTGCGAAA CCGGCTCGCTTGAGGGCAT TCATC ATGCCTTCG-GCGAGCAGG TTATCGTCTTCCACT CJA_3512 4202171 - 4202296 + | hypothetical protein kefB 4204370 - 4202403 - | glutathione-regulated potassium-efflux system protein TERM 5377 4203842 - 4203802 - G 72 -5.5 -4.50583 | gap 2, overlap 4203833 AACACCAGCACAAAA GCCAGCACCGCCTTGGCCA TCGCC CAGCCAAGG-G-TGTTGGC CAGCACGTCGGCACC TERM 5378 4203936 - 4203954 + g 72 -10.2 -3.41051 | CGACATCGCCAATCC CAGGCGCC CAT GGCGGCTG TTCTCCTCCCCCTGC TERM 5379 4204490 - 4204476 - R 100 -12.8 -5.64274 | opp_overlap 4204476 CCAGGCACAAAAAAA CCGGCC CAA GGCCGG TTTTTGAGAAAGCAC TERM 5380 4204476 - 4204490 + r 100 -12.8 -4.56597 | opp_overlap 4204476 CCAGGCACAAAAAAA CCGGCC CAA GGCCGG TTTTTGAGAAAGCAC rpmG 4204670 - 4204515 - | ribosomal protein L33 CJA_3515 4204924 - 4204688 - | ribosomal protein L28-related protein TERM 5381 4205211 - 4205186 - H 75 -9.9 -3.56558 | CAATAGCAATGAGAA GCTGCTTTTTT GTCC AAAAAAACAGC TAACTGCCCCATATT CJA_3516 4205349 - 4206212 + | hypothetical protein TERM 5382 4206298 - 4206274 - g 100 -12.9 -5.63504 | AATTGCATAAAAAAA CCGGATTGCAC ACA GCACAATCCGG TAACCATACAATCAC TERM 5383 4206424 - 4206411 - g 72 -6.7 -4.22678 | CACATGGAAGAGAAA CCTGA AGAC TCAGG CGGAACCTCGACCAC TERM 5384 4206897 - 4206878 - g 100 -15 -5.37043 | ACCCCACATAAAAAA CCAGCGGC ATTT GCCGCTGG TCGATGATCAAACAT CJA_3518 4206261 - 4206947 + | hypothetical protein CJA_3517 4207371 - 4206925 - | putative lipoprotein TERM 5385 4207102 - 4207118 + g 100 -2.2 -5.88197 | overlap 4207104 TTCAGAGCGTATCTC TACCTG CGTGA CGGGTG TTTTTTTATCTTTAA TERM 5386 4207212 - 4207222 + g 75 -4.6 -4.82901 | CTTTAACCCCATCCC GGGG CGC TCCC TTTTTATCGACGGAA CJA_3519 4209605 - 4207392 - | putative adenylate cyclase TERM 5387 4208976 - 4208966 - G 74 -3.2 -4.87892 | GGGGAATAAAATAAA TACC TGC GGCA ATGAGTGCGAATAAC CJA_3520 4209665 - 4209790 + | hypothetical protein CJA_3521 4209816 - 4210514 + | cyclic AMP receptor protein TERM 5388 4210538 - 4210517 - T 85 -13.7 -3.04144 | TCGCTACTGGTAACA GCAGGTGGC TACA GCCACCCGC GCTCCGCCAGGGACA CJA_3522 4211199 - 4210525 - | DNA repair protein RadC TERM 5389 4210925 - 4210937 + g 71 -9.1 -3.53343 | ATGTCGGCATGGATA TGGCG CCG CGCCA TTTCCAGCACCGCTT TERM 5390 4211383 - 4211365 - H 74 -6 -4.67234 | opp_overlap 4211365, overlap 4211356 AGGCAACGCCAAAAA GCGCTA GGCTTGA TAGCGC TTGACTGACTTGCCC TERM 5391 4211490 - 4211502 + G 76 -10.5 -3.28712 | TGCTCGGCGTCACCG GCGGC ATA GCCGC TTATAAAAGCGCAGA TERM 5392 4211527 - 4211511 - g 70 -5.1 -4.3739 | overlap 4211513 TAGCCGCTTATAAAA GCGCA GAGCTGG TGCGC CGCCTGCAAGATGCC TERM 5393 4212244 - 4212254 + G 74 -2.4 -5.12068 | CCTGCGCGAAGCAGC GGAC TGT GACC TTTTTATTGCCTCTG TERM 5394 4212350 - 4212322 - g 100 -11 -6.07374 | ACAAAAAATAAAAAA GGGCGAGGGTGA GAGCA TCACCCTGACCC TGGTAAAAAACCCGG coaBC 4211393 - 4212664 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 5395 4214769 - 4214789 + G 74 -7.5 -4.03995 | overlap 4214768 AACCGGAGCTCTCAT TGGCGGGGA ATA TTCCGGCCA TATTTTTATCAAGGA algC 4212688 - 4215195 + | phosphomannomutase AlgC TERM 5396 4215717 - 4215747 + G 70 -4.1 -4.66318 | gap 1, opp_overlap 4215717, overlap 4215704 4215718 TGCAAAGCGTGAATA CCGCTG-TGATTGA TATG TTAATCAACAGCGA TTTTATTCCGGTGAT argB 4215218 - 4216123 + | acetylglutamate kinase TERM 5397 4216152 - 4216132 - f 83 -10.4 -3.78775 | GGCCTGATCACTAAA CGCTGCCC ACCAG GGACAGCG CCTTCGGTGGAGCAC CJA_3526 4216173 - 4216787 + | transcriptional regulator, TetR family TERM 5398 4216825 - 4216843 + T 100 -11.7 -4.88228 | opp_overlap 4216825 TAACGGCTAAAAAAA TCCCGGC TTAAT GCCGGGA TTTTTCATCTTCCGT TERM 5399 4216843 - 4216825 - T 100 -11.7 -5.43866 | opp_overlap 4216825 TAACGGCTAAAAAAA TCCCGGC TTAAT GCCGGGA TTTTTCATCTTCCGT CJA_3527 4217488 - 4216832 - | hypothetical protein pyrE 4218149 - 4217502 - | orotate phosphoribosyltransferase crc 4218360 - 4219130 + | catabolite repression control protein TERM 5400 4219179 - 4219154 - T 100 -16.9 -5.14965 | opp_overlap 4219154 ACCTGCATTAAAAAA GCCCGCGATGA ATAT CCATCGCGGGC TTTTTAATTTCCTAT TERM 5401 4219154 - 4219179 + T 100 -16.2 -5.02715 | opp_overlap 4219154 ACCTGCATTAAAAAA GCCCGCGATG AATATC CATCGCGGGC TTTTTAATTTCCTAT CJA_3530 4219621 - 4219202 - | Tat (twin-arginine translocation) pathway signal sequence domain protein TERM 5402 4219458 - 4219475 + g 72 -5.5 -4.56597 | ATTAATTGCGCGCGA TCCTGTG CAGA CTCAGGA TTTTTCAACCAGAAA thiI 4221188 - 4219713 - | thiazole biosynthesis protein ThiI TERM 5403 4221507 - 4221539 + r 100 -23.7 -4.41616 | opp_overlap 4221510 4221513 GGCGGTGATTGCTGA CAACAATCCCGGCAT CAT ATGCCGGGATTGTTG TTTATTTGGAGCGAT TERM 5404 4221536 - 4221510 - R 100 -19.6 -3.30124 | opp_overlap 4221507, overlap 4221513 GGTGATTGCTGACAA CAATCCCGGCAT CAT ATGCCGGGATTG TTGTTTATTTGGAGC TERM 5405 4221533 - 4221513 - R 100 -15.5 -3.7941 | opp_overlap 4221507, overlap 4221510 GATTGCTGACAACAA TCCCGGCAT CAT ATGCCGGGA TTGTTGTTTATTTGG TERM 5406 4221561 - 4221573 + r 71 -7.7 -3.84719 | opp_overlap 4221561 TGGAGCGATGGACAA CAGCT GCC AGCTG TTTGAGTTTGGGAGT CJA_3532 4222836 - 4221541 - | transporter, monovalent cation:proton antiporter family TERM 5407 4222394 - 4222383 - G 72 -5.8 -4.29738 | TGATACTGAGCAAAA TGGC GGCT GCCA CACAGCCAAACAACA CJA_3533 4223030 - 4222839 - | hypothetical protein glnA 4223311 - 4224711 + | glutamine synthetase, type I TERM 5408 4224765 - 4224788 + F 100 -15.2 -5.27335 | opp_overlap 4224744 4224765 GCAAGATGGCAAAAA GCCCGCCCCC GACA GGGAGCGGGC TTTTTGTTTGCGGCG TERM 5409 4224788 - 4224765 - f 100 -17.4 -4.66953 | opp_overlap 4224765, overlap 4224744 GCAAGATGGCAAAAA GCCCGCCCCC GACA GGGAGCGGGC TTTTTGTTTGCGGCG TERM 5410 4224965 - 4224929 - g 72 -6.5 -4.39426 | opp_overlap 4224940 4224942 CAGAGGTTTATAAAA CCGTCGATAAAGATGGC CGG GTCATCTATTCCGACAG CCCCAAAACCGACAA CJA_3535 4224844 - 4225401 + | hypothetical protein TERM 5411 4225796 - 4225780 - g 72 -8 -3.87318 | AACCATTACACCAAA CGCCAT GCCGA ATGGCG CCTGTTAAGCGGTGG TERM 5412 4225992 - 4225980 - g 78 -9.1 -3.91541 | CCACGAAATCAAGAA TCCCC TGG GGGGA ATCCGCGGTGCCGCC CJA_3536 4225552 - 4226628 + | hypothetical protein TERM 5413 4227835 - 4227817 - g 74 -8 -4.12456 | AGACGACTGGGAAAA GGCCCTGC GCC ACTGGGCC GACCAGGCCCTGGCA ntrC 4226612 - 4228048 + | nitrogen regulation protein NR(I) TERM 5414 4228084 - 4228110 + F 70 -5 -4.38666 | TACCCCACCTCAACC CCCTGGAACG CGACAAA CGGGCCAGGG TATTTTTTTGCATGT TERM 5415 4229355 - 4229343 - g 84 -4.1 -5.26316 | overlap 4229347 CCACCGCACAAAAAA TCCAG GTG CTGAA AAACAACTCCGTCAA CJA_3538 4228397 - 4229887 + | Methyl-accepting chemotaxis protein TERM 5416 4229902 - 4229929 + T 80 -12.8 -3.1149 | opp_overlap 4229904 4229908, overlap 4229904 4229908 ATTGCCTTAACCATA AATAAACCCGCC AGCT GGCGGGTTTATG GTTTTCAGGTTGCGT TERM 5417 4229904 - 4229927 + T 93 -15.4 -3.11289 | opp_overlap 4229904 4229908, overlap 4229902 4229908 TGCCTTAACCATAAA TAAACCCGCC AGCT GGCGGGTTTA TGGTTTTCAGGTTGC TERM 5418 4229927 - 4229904 - T 100 -15.4 -4.05446 | opp_overlap 4229904 4229902 4229908, overlap 4229908 TGCCTTAACCATAAA TAAACCCGCC AGCT GGCGGGTTTA TGGTTTTCAGGTTGC TERM 5419 4229923 - 4229908 - T 100 -11.8 -4.62622 | opp_overlap 4229908 4229904 4229902, overlap 4229904 TTAACCATAAATAAA CCCGCC AGCT GGCGGG TTTATGGTTTTCAGG TERM 5420 4229908 - 4229923 + T 95 -11.8 -4.208 | opp_overlap 4229904 4229908, overlap 4229904 4229902 TTAACCATAAATAAA CCCGCC AGCT GGCGGG TTTATGGTTTTCAGG CJA_3539 4231097 - 4229934 - | hypothetical protein TERM 5421 4230375 - 4230364 - G 82 -2.2 -5.40474 | AGGCGCGCAAAAAAA TCCG CGCT CAGA TAGCCATCATGGCCG exoD 4231258 - 4231911 + | ExoD TERM 5422 4232142 - 4232161 + G 100 -10.8 -4.59773 | CTGGATGGTCACCCT CACTGAAC CCCT GTTCAGTG TTTTTGGCCATAGCC TERM 5423 4233303 - 4233280 - g 77 -6.6 -4.56775 | ATTGCCCTGGAAAAA CTGGAAGAGC TACT GCGCATCCAG CTGGATCGGGGCGAT CJA_3541 4231930 - 4233507 + | CBS domain protein TERM 5424 4233541 - 4233556 + F 74 -10.4 -3.19463 | opp_overlap 4233552 CGCGAACCCGGTCAC GGGCGT TAAT ACGCCC TTGGTGAATAATGGC CJA_3542 4233567 - 4233671 + | hypothetical protein CJA_3543 4233749 - 4234318 + | hypothetical protein TERM 5425 4234674 - 4234707 + G 100 -6.5 -5.8901 | overlap 4234677 4234678 GATGCAAATCGTCTC CTTCCTGGGCGCCAG CGCA CTGGCGACCAGCTTG TTTTTTCTTTTCTAT TERM 5426 4234677 - 4234704 + G 100 -11.2 -4.94109 | overlap 4234674 4234678 GCAAATCGTCTCCTT CCTGGGCGCCAG CGCA CTGGCGACCAGC TTGTTTTTTCTTTTC TERM 5427 4234678 - 4234703 + G 100 -14.7 -3.52805 | overlap 4234677 4234674 CAAATCGTCTCCTTC CTGGGCGCCAG CGCA CTGGCGACCAG CTTGTTTTTTCTTTT TERM 5428 4234767 - 4234750 - g 73 -11.3 -2.78596 | overlap 4234752 TATTTTTCGACCACA CAGCAGG TCGT CCTGCTG ACACTCGCACCCCTG CJA_3544 4234423 - 4235517 + | hypothetical protein TERM 5429 4235958 - 4235947 - g 95 -5.8 -5.38321 | AAACACTACAAAAAA CCTG GCAA CAGG AAAAAGATACCCTGG CJA_3545 4235514 - 4236332 + | hypothetical protein CJA_3546 4237213 - 4236353 - | Phytanoyl-CoA dioxygenase (PhyH) family CJA_3547 4239117 - 4237225 - | ABC transporter, ATP-binding protein TERM 5430 4238024 - 4237994 - GH 82 -9 -4.15453 | opp_overlap 4238023, overlap 4237983 4237982 TAACCGAGCTTAAAA TGCTCGCCATTG GTGCGGT CACCGGCGAGCA GCGGCAGGGAACCTG TERM 5431 4238382 - 4238392 + gH 71 -6.8 -4.08216 | opp_overlap 4238376, overlap 4238388 CGAAATTCACCTGCT GCTG GGC CAGC TTTTCAGCGCGCTGG CJA_3548 4239116 - 4239646 + | putative conserved hypothetical protein TIGR02444 TERM 5432 4239677 - 4239663 - TR 100 -12.8 -5.42198 | CTGGAAAAAACAAAA CCCCGC TCA GCGGGG TTGGCAAGGGGTAGC CJA_3549 4239987 - 4239745 - | hypothetical protein CJA_3550 4241043 - 4240171 - | Divergent polysaccharide deacetylase family TERM 5433 4240527 - 4240538 + gr 70 -3.6 -4.6902 | overlap 4240521 CAGCCTCTGCCATGG CCTG GGCA CGGG TTTTTGCCGTTGTAC TERM 5434 4240594 - 4240572 - GR 71 -3.2 -4.77173 | overlap 4240574 TGTCGACAAAATAAA GCCCGCGCTG CTT CAGCTCCGCC ATCAACCAGCGCATA CJA_3551 4242457 - 4241012 - | carboxyl-terminal protease CJA_3552 4243790 - 4242549 - | peptidase, M23/M37 family TERM 5435 4242627 - 4242614 - G 72 -4.5 -4.67048 | GTATTTCAAAATAAA GCCCA TTGC TGGAC TGGCCACCACTGTTG TERM 5436 4243108 - 4243131 + g 90 -6.6 -5.12617 | overlap 4243096 4243097 TTAACTTTGGCCAGC GCTGACTGGC GCTG GCCATGCAGC TTTTTTAGCTGGTTA TERM 5437 4243793 - 4243815 + r 100 -17.8 -3.37522 | opp_overlap 4243793 GGTGGAAAAACAAAA CCCGGATTGC GCG GCAATCCGGG TTGGTTCAGTAGGCT TERM 5438 4243815 - 4243793 - R 100 -17.8 -5.26119 | opp_overlap 4243793 GGTGGAAAAACAAAA CCCGGATTGC GCG GCAATCCGGG TTGGTTCAGTAGGCT gpmI 4245381 - 4243831 - | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TERM 5439 4245295 - 4245310 + g 72 -7.5 -3.90901 | ATATACCGGAGTCTG CGCCG CGTAAA CGGCG TTGTATTTGGTTCGT CJA_3554 4245726 - 4245457 - | hypothetical protein CJA_3555 4245700 - 4246116 + | rhodanese-like domain protein grxC 4246142 - 4246399 + | glutaredoxin 3 secB 4246452 - 4246955 + | protein-export protein SecB TERM 5440 4246977 - 4246995 + F 100 -11.7 -5.79595 | TTTATGCCCCTGTAA GGCAGCC CTGGT GGCTGCC TTTTTTATTTTCCAC TERM 5441 4248395 - 4248413 + G 77 -6.7 -4.56597 | TTGAGATTAGCCATC TTGCTGC GCCTG GCGGCAA TTTTTCACCGCGGCG CJA_3558 4247093 - 4248598 + | exopolyphosphatase TERM 5442 4248663 - 4248628 - T 86 -12 -3.65522 | opp_overlap 4248632 4248638, overlap 4248632 4248638 TATTTAGCGCAAGAA GCAAGAAAAAGGGGCA TGAC TGCCCCTTTTTCTTTT GGTCACTCAGTTACA TERM 5443 4248632 - 4248659 + T 100 -17.2 -4.28548 | opp_overlap 4248628 4248632 4248638, overlap 4248638 TAGCGCAAGAAGCAA GAAAAAGGGGCA TGAC TGCCCCTTTTTC TTTTGGTCACTCAGT TERM 5444 4248659 - 4248632 - T 100 -17.2 -3.54158 | opp_overlap 4248632 4248638, overlap 4248628 4248638 TAGCGCAAGAAGCAA GAAAAAGGGGCA TGAC TGCCCCTTTTTC TTTTGGTCACTCAGT TERM 5445 4248638 - 4248653 + T 100 -10.4 -5.50723 | opp_overlap 4248632 4248628 4248638, overlap 4248632 AAGAAGCAAGAAAAA GGGGCA TGAC TGCCCC TTTTTCTTTTGGTCA TERM 5446 4248653 - 4248638 - T 100 -10.4 -5.23396 | opp_overlap 4248638 4248632, overlap 4248632 4248628 AAGAAGCAAGAAAAA GGGGCA TGAC TGCCCC TTTTTCTTTTGGTCA rgl11A 4251315 - 4248670 - | rhamnogalacturonan lyase, rgl11A TERM 5447 4250098 - 4250064 - G 70 -11.2 -2.71712 | overlap 4250063 GGTTGGGGTTGAAAT CGCCCAGGTGCAAGGC ATC GCCATGCCCCAGGCCG GTGGAATAGAGCAGG TERM 5448 4251487 - 4251509 + r 70 -10.5 -2.52464 | opp_overlap 4251478 4251477 ATAAATGCTTATCCA GCCCGTCGC CTCAA GCGACGGAC TGCCTTGCCAACGCC ppk 4253661 - 4251562 - | polyphosphate kinase TERM 5449 4251714 - 4251725 + g 100 -5.8 -5.60993 | opp_overlap 4251714 CCAGATCCTCCATAA TCCG CTCG CGGA TTTTTTTATGGCGAA TERM 5450 4252595 - 4252559 - G 71 -2.2 -5.00616 | opp_overlap 4252593, overlap 4252561 GCCTCGCGCAAAAAA TCCACCACACACTGGA ATGAA TCAAACGGGTGGTGCA ACAGGATGTCCTGCC TERM 5451 4253034 - 4253023 - G 75 -7.2 -4.43283 | GGAGATAAACACAAA GGCG CGCC CGCC CTCTACCAATGCCGA TERM 5452 4253534 - 4253516 - G 88 -2.2 -5.53079 | overlap 4253520 AAAATACACAAAAAA CGCAGCCG TTC CAGCAGGG GCAAGTTTTGGTTAT TERM 5453 4253809 - 4253787 - R 88 -14.8 -3.00298 | GGCGGGAAGGAGACA TGGCCCCGGC ATT GCCGGGGCGA GAACATCAGCAATCA CJA_3561 4254139 - 4253822 - | putative lipoprotein CJA_3562 4254382 - 4254182 - | hypothetical protein CJA_3563 4254386 - 4256551 + | hypothetical protein TERM 5454 4258175 - 4258148 - g 73 -4.2 -4.82901 | gap 1, overlap 4258149 TGGTCGCTACAAAAA CTTTGCCCA-CCA CGG TGGCTGGGTAAAA GGCTTCCGTTCCGAG bla 4256697 - 4258343 + | beta-lactamase CJA_3565 4258504 - 4259247 + | CAAX amino terminal protease family TERM 5455 4259614 - 4259590 - g 100 -20 -4.2461 | opp_overlap 4259582 4259611 ACCTTTACCAATAAA GCCGCGCGCG AAATG CGCGCGCGGC TCGACGAGCTGTTTG TERM 5456 4260795 - 4260768 - g 83 -9.8 -4.10429 | AATTATCGCGCAAAA GGCACTGTCAGC CCGC GCCGCCAATGCC GTACAAACCTTCCTT uvrD 4259311 - 4261620 + | DNA helicase II TERM 5457 4261665 - 4261652 - f 83 -6.7 -5.08824 | opp_overlap 4261639 GGTGTAGCCAAAAAA GCTAC AGTT GTAGC TAAATAAGCTATAGG CJA_3567 4261741 - 4262889 + | extracellular solute-binding protein, family 7 CJA_3568 4263530 - 4262895 - | hypothetical protein CJA_3569 4263640 - 4264665 + | guanylate kinase (GMP kinase) TERM 5458 4264677 - 4264690 + F 73 -9.5 -3.47475 | opp_overlap 4264667, overlap 4264669 4264675 CTAACCCGGGCTATT GGGGC TATA GCCCC TATTGTTGGATTTAT rpoZ 4264775 - 4265041 + | DNA-directed RNA polymerase, omega chain TERM 5459 4265058 - 4265081 + F 81 -12.4 -3.16564 | overlap 4265060 ACGCGTGTGATTGAT CACCAGCCGC TCAT GCGGCTGGTA TTGATGGAGTAGGGC TERM 5460 4265060 - 4265079 + F 100 -15 -3.14602 | overlap 4265058 GCGTGTGATTGATCA CCAGCCGC TCAT GCGGCTGG TATTGATGGAGTAGG TERM 5461 4265357 - 4265346 - g 84 -3.6 -5.1861 | GGGATCAGCAAAAAA GCCA TCTC CGGC CAGTTTGGCGATGCG TERM 5462 4265478 - 4265461 - g 90 -9.9 -4.41844 | AAAACTTCCAGAAAA TGGCCAT GGCC ATGGCCA ACGACCTGCGCGTAA TERM 5463 4266265 - 4266241 - g 72 -7.1 -4.28049 | opp_overlap 4266241 4266239 4266243 TCGAAAACGTGAAAA TCGACCTCTTC CCC GACGAGGTCTA TGTGTTTACGCCCAA TERM 5464 4266243 - 4266263 + G 70 -9.7 -3.18571 | opp_overlap 4266241, overlap 4266241 4266239 GAAAACGTGAAAATC GACCTCTTC CCC GACGAGGTC TATGTGTTTACGCCC TERM 5465 4266653 - 4266606 - g 88 -12.8 -3.61239 | gap 1 CATATCGATATAGAA CACCTGAACGAAGAGCAGAA-AC AAC GCATTCTGCTCGGCGCCCAGGTG GATAACCTGGATAAG spoT 4265097 - 4267208 + | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase CJA_3572 4267416 - 4267799 + | putative endoribonuclease L-PSP TERM 5466 4267827 - 4267850 + T 100 -16 -5.30189 | opp_overlap 4267827 TTCGCCCATTAAAAA GCCGACCCGG TTTC TCGGGTCGGC TTTTTTAGTCTTATC TERM 5467 4267850 - 4267827 - T 100 -15.3 -4.72272 | opp_overlap 4267827 TTCGCCCATTAAAAA GCCGACCCG GTTTCT CGGGTCGGC TTTTTTAGTCTTATC CJA_3573 4269298 - 4267877 - | dihydrolipoamide dehydrogenase CJA_3574 4269741 - 4269610 - | hypothetical protein CJA_3575 4269641 - 4270204 + | hypothetical protein CJA_3576 4270424 - 4270326 - | hypothetical protein CJA_3577 4270217 - 4270981 + | hypothetical protein TERM 5468 4271018 - 4271002 - fH 100 -13.7 -3.92324 | opp_overlap 4270995 CTGTTTAACAGGAAA GGGCTGC ATA GCAGCCC TTGCAGACTTCTGAT TERM 5469 4271033 - 4271067 + FH 100 -13 -5.08824 | opp_overlap 4271037 CTTGCAGACTTCTGA TAAACCCCACCTGACA GCC TGTTAAGTGGGGTTTG TTTTTTGGATACCGA TERM 5470 4271063 - 4271037 - fH 95 -11.6 -3.87373 | opp_overlap 4271033 CAGACTTCTGATAAA CCCCACCTGACA GCC TGTTAAGTGGGG TTTGTTTTTTGGATA TERM 5471 4271500 - 4271483 - g 71 -2.7 -4.74013 | GGGAAACATACAAAA GCTATTC AGAC GAACAAC TGCAGGATTTGATTG CJA_3578 4271200 - 4271964 + | hypothetical protein TERM 5472 4271986 - 4272000 + T 88 -5.6 -5.59502 | opp_overlap 4271985 4271986, overlap 4271988 TGTTTAACAGGAAAG GTCTGC CTC GCAGCC TTTTTTAATTTTTTA trkA 4273409 - 4272024 - | Trk system potassium uptake protein TrkA sun 4274750 - 4273452 - | ribosomal RNA small subunit methyltransferase B TERM 5473 4273660 - 4273633 - G 75 -12 -3.09516 | opp_overlap 4273633 4273632, overlap 4273635 CGGGGCATGACCGAA CAGGTGGCATAC AGCA GGATGCCACCCG GTTTGAGCAGGGGCC TERM 5474 4273658 - 4273635 - G 72 -11 -3.10796 | opp_overlap 4273633 4273632, overlap 4273633 GGGCATGACCGAACA GGTGGCATAC AGCA GGATGCCACC CGGTTTGAGCAGGGG TERM 5475 4274253 - 4274290 + g 83 -9.9 -4.08216 | gap 1 AGGGGGATGCTCGTT GTTGGCGGCCAACAGGCT ATC GGTCTGTTGGG-GCCAGC TTTTACGCAGCATGC TERM 5476 4274411 - 4274426 + g 95 -6.8 -5.21709 | ATACACCGTTCACCA GCTTGG TCGC CCAGGC TTTTTTAATATCACG TERM 5477 4274693 - 4274721 + g 80 -13.1 -2.52464 | overlap 4274694 GGCTGGACAGCGACC CCTGCTGGCGCAG TAT CTGCGCCAGCACC TGGGTTGCAGCGGCG fmt 4275769 - 4274747 - | methionyl-tRNA formyltransferase TERM 5478 4275558 - 4275577 + g 80 -5.7 -5.00616 | overlap 4275559 GCCAGGGCGACCGCC TTGACCG GGCTGG CGGTCAG TTTTTTACCGCGCCC TERM 5479 4275775 - 4275761 - G 100 -8.5 -5.63517 | TCGGGAAATAAAAAA GGCGC TCATC GCGCC TTGGGGAGGGGAGCC def 4276299 - 4275790 - | peptide deformylase CJA_3583 4276367 - 4277488 + | LysM domain protein TERM 5480 4277505 - 4277534 + F 100 -12.1 -4.77438 | opp_overlap 4277512, overlap 4277508 4277512 ATTCTGAAAAGGTCT CCTGAAAGCCGCC ATCG GGCGGCTTTCTTG TTTTTGCTGATACAT TERM 5481 4277508 - 4277531 + F 100 -16.8 -4.49314 | opp_overlap 4277512, overlap 4277505 4277512 CTGAAAAGGTCTCCT GAAAGCCGCC ATCG GGCGGCTTTC TTGTTTTTGCTGATA TERM 5482 4277527 - 4277512 - f 86 -11.8 -3.5394 | opp_overlap 4277512 4277508 4277505 AAAGGTCTCCTGAAA GCCGCC ATCG GGCGGC TTTCTTGTTTTTGCT TERM 5483 4277512 - 4277527 + F 100 -11.8 -4.78157 | opp_overlap 4277512, overlap 4277508 4277505 AAAGGTCTCCTGAAA GCCGCC ATCG GGCGGC TTTCTTGTTTTTGCT smf 4277575 - 4278738 + | smf protein CJA_3584 4280279 - 4278714 - | putative methyl-accepting chemotaxis protein TERM 5484 4280706 - 4280688 - g 85 -8.8 -4.57569 | CCAGCGCCTTAAAAA TACCTGGC CAG GCCCGGTA ACCTGGCTGGTGCCG CJA_3586 4280302 - 4281003 + | Sua5/YciO/YrdC/YwlC family protein TERM 5485 4281178 - 4281206 + G 70 -5.2 -4.36914 | gap 1, overlap 4281179 GATCGTATCTGCCAG GCGCTGGCAGCCG AAGA TGGC-GCTAGCGG TTTTATCGAAGACAG TERM 5486 4281342 - 4281388 + G 81 -10.7 -3.70037 | overlap 4281380 GCCCGCCTCGGCCAC CGCCCATCGCCCCGAACTGGC CGGGC GCGCTTTCGAGGCCATGGGCG TTTCCCTGGTGATTC hemF 4281103 - 4282023 + | coproporphyrinogen III oxidase, aerobic TERM 5487 4282814 - 4282849 + G 72 -6.8 -4.2349 | gap 1, opp_overlap 4282790 GCACACACTGCCGAT GGCCTGGGTATGCTGGT CGG ACAGGCA-GCCGAGGCC TTTTACCTGTGGCGA aroE 4282100 - 4282930 + | shikimate 5-dehydrogenase TERM 5488 4282963 - 4282928 - f 76 -2.4 -5.31275 | opp_overlap 4282934 4282936 4282954, overlap 4282931 4282932 4282934 4282935 CTGCACGAGAAAAAA TAACGACCTGCCCCGC ACCT GCGGGGCATATTTTTT ATATGGTTTACCTGA TERM 5489 4282960 - 4282931 - f 73 -4.1 -4.74611 | opp_overlap 4282934 4282936 4282954, overlap 4282928 4282932 4282934 4282935 CACGAGAAAAAATAA CGACCTGCCCCGC ACCT GCGGGGCATATTT TTTATATGGTTTACC TERM 5490 4282934 - 4282957 + F 95 -8 -5.43487 | opp_overlap 4282934 4282932 4282931 4282928 4282935, overlap 4282936 4282954 GAGAAAAAATAACGA CCTGCCCCGC ACCT GCGGGGCATA TTTTTTATATGGTTT TERM 5491 4282957 - 4282934 - f 74 -10.2 -3.26205 | opp_overlap 4282934 4282936 4282954, overlap 4282932 4282931 4282928 4282935 GAGAAAAAATAACGA CCTGCCCCGC ACCT GCGGGGCATA TTTTTTATATGGTTT TERM 5492 4282956 - 4282935 - f 73 -11.5 -2.54096 | opp_overlap 4282934 4282936 4282954, overlap 4282934 4282932 4282931 4282928 AGAAAAAATAACGAC CTGCCCCGC ACCT GCGGGGCAT ATTTTTTATATGGTT TERM 5493 4282936 - 4282955 + F 100 -15 -4.32846 | opp_overlap 4282935 4282934 4282932 4282931 4282928, overlap 4282934 4282954 GAAAAAATAACGACC TGCCCCGC ACCT GCGGGGCA TATTTTTTATATGGT CJA_3589 4282966 - 4283388 + | hypothetical protein TERM 5494 4283787 - 4283807 + G 82 -11.9 -3.53012 | TGACCAGGTACAGGG CTGTGCAGT GCT ACTGCACGG TTTGGCGCGCACCCA CJA_3590 4283638 - 4284435 + | hypothetical protein TERM 5495 4285663 - 4285638 - g 72 -4.6 -4.67755 | overlap 4285626 ACACCGACCGAAAAA CCGCTCGG CCTGGCATTT CCGCGCGG CGTTTATTCGCTGAC pldB3 4284471 - 4285898 + | hypothetical protein CJA_3592 4285926 - 4286471 + | hypothetical protein afc95B 4289043 - 4286524 - | alpha-L-fucosidase, putative, afc95B TERM 5496 4287082 - 4287043 - G 85 -13 -3.14132 | gap 1, opp_overlap 4287039 4287043 CTGCTCCTGCAGCAA TTGATAGGCGCGGTTGCCA TCG TGG-AAGCGCGCCCACCAA TTAATTTTCCAACCC TERM 5497 4287291 - 4287313 + g 81 -9 -4.09739 | opp_overlap 4287284 CAAAGTGACCTATGC GCATGGGCGC CAG GCGCTCGCGC TTTTGGCGCAGTTGC TERM 5498 4287550 - 4287535 - G 100 -10.4 -5.24129 | GCTGTCGACAAAAAA GCGCGA GGCC TCGCGC AGCACCGGGTAGTAA TERM 5499 4287591 - 4287578 - G 77 -3.1 -5.03145 | gap 1 TAACGCTGTAAAAAA TCGCGG TCG CC-CGA ATGCAGGTAGTGATA TERM 5500 4288153 - 4288189 + g 100 -15.2 -3.28712 | opp_overlap 4288153, overlap 4288155 GGCAGCGGACAGATA CG-CCTGGGCGCGCGCCA GGC TGTCGC-CGCCCAGGTCG TTGTAGCGGACGAAG TERM 5501 4288189 - 4288153 - G 95 -15.2 -3.00022 | opp_overlap 4288153 4288155 GGCAGCGGACAGATA CG-CCTGGGCGCGCGCCA GGC TGTCGC-CGCCCAGGTCG TTGTAGCGGACGAAG TERM 5502 4288155 - 4288186 + g 100 -16.6 -2.82623 | gap 1, opp_overlap 4288153, overlap 4288153 CAGCGGACAGATACG CCTGGGCGCGCGCCA GGC TGTCGC-CGCCCAGG TCGTTGTAGCGGACG gly43B 4290942 - 4289245 - | xylosidase/arabinosidase, putative, gly43B TERM 5503 4290363 - 4290387 + g 93 -6.3 -5.25803 | opp_overlap 4290362, overlap 4290365 CCTCACCCACCAAGT GGCCGGGATCG ATG CGATCCGGGTA TTTTTTATCGGGGTT TERM 5504 4290365 - 4290385 + g 91 -11.1 -4.25873 | opp_overlap 4290362, overlap 4290363 TCACCCACCAAGTGG CCGGGATCG ATG CGATCCGGG TATTTTTTATCGGGG CJA_3595 4292036 - 4291023 - | putative Fructose repressor TERM 5505 4291787 - 4291749 - G 88 -11 -4.13591 | overlap 4291759 GCAACAGGAGATAAA CAGCTGCAAACCCGCCGC GCG ACAGCGAATTTCCAGCCG CTCGGCCAGGAGTGC CJA_3596 4292545 - 4295277 + | TonB-dependent receptor CJA_3597 4295289 - 4295390 + | hypothetical protein TERM 5506 4295391 - 4295425 + F 71 -10.8 -2.60211 | gap 1, overlap 4295390 4295389 AACCTGGTGGCTTAA GGGTACGGCCAGGAT CCATCA AGCCTGG-CGTACCC CCTTTTTGAAACCCT TERM 5507 4297062 - 4297086 + G 70 -7.2 -4.07568 | gap 1, overlap 4297036 CGAACTCTACGCGCG GGTGCC-CTTT ATCC AGAGAGGCACC TTTTAAACCGACACC estA1 4295491 - 4297092 + | carboxylesterase type B CJA_3599 4297137 - 4297259 + | putative lipoprotein TERM 5508 4297332 - 4297352 + F 86 -4.6 -5.52384 | overlap 4297334 ATCGATTGTTTTGCA GACCCGGC GTATG GCTGGGTG TTTTTTTCATGGCAC TERM 5509 4297334 - 4297350 + F 77 -7.2 -4.40552 | overlap 4297332 CGATTGTTTTGCAGA CCCGGC GTATG GCTGGG TGTTTTTTTCATGGC TERM 5510 4297384 - 4297417 + G 70 -6 -4.26188 | gap 2, overlap 4297396 GGCAACACTTACCGC CAGCG-CTGC-CCAGG CGCC CCAGGCGCAGTTGCTG TTTTACGTCTCTGCG TERM 5511 4297519 - 4297498 - g 77 -8.7 -4.0942 | gap 1 TATCGACCAGATAAA GCGCA-GCCA TAC CGGCGTGCGC GATGCCCAGAGTAAC TERM 5512 4297642 - 4297667 + G 70 -3.9 -4.62336 | gap 1, overlap 4297648 CTGGCGCCCCGGTTA TC-CGGTGGGCG AAG CGCCCTTTGTGA TTTTTCGCGTGGGCT TERM 5513 4297648 - 4297660 + G 91 -10.5 -4.2687 | overlap 4297642 CCCCGGTTATCCGGT GGGCG AAG CGCCC TTTGTGATTTTTCGC TERM 5514 4297885 - 4297929 + G 76 -7.8 -4.25283 | opp_overlap 4297886 4297887, overlap 4297886 4297887 GTATGTGGATGGTAA AC-CCGCTGCCCGGGCCGCG CTCAACA CGC-GCCTGGGCAGCGCTGA TTTTGATACGGGGCT TERM 5515 4297927 - 4297886 - g 81 -10.7 -3.60296 | gap 1, opp_overlap 4297885 4297886 4297887, overlap 4297887 TATGTGGATGGTAAA CCCGCTGCCCGGGC-CGCGC TCA ACACGCGCCTGGGCAGCGCT GATTTTGATACGGGG TERM 5516 4297886 - 4297928 + G 77 -11.3 -3.14848 | opp_overlap 4297886 4297887, overlap 4297885 4297887 TATGTGGATGGTAAA C-CCGCTGCCCGGGCCGCG CTCAACA CGC-GCCTGGGCAGCGCTG ATTTTGATACGGGGC TERM 5517 4297926 - 4297887 - g 85 -14.2 -2.75963 | gap 1, opp_overlap 4297886 4297885 4297887, overlap 4297886 ATGTGGATGGTAAAC CCGCTGCCCGGGC-CGCGC TCA ACACGCGCCTGGGCAGCGC TGATTTTGATACGGG TERM 5518 4297887 - 4297926 + G 95 -15 -3.13504 | gap 1, opp_overlap 4297887 4297886, overlap 4297886 4297885 ATGTGGATGGTAAAC CCGCTGCCCGGGCCGCG CTCAACA CGC-GCCTGGGCAGCGC TGATTTTGATACGGG TERM 5519 4298824 - 4298810 - g 70 -6.4 -4.16943 | overlap 4298812 GCCGATACGCTAAAA CACCAG CCG CTGGTA CACGTCTTGATTCCC TERM 5520 4299136 - 4299148 + G 71 -9.1 -3.53761 | opp_overlap 4299129 TTTAACCATCGCCGC TGCCG CAC CGGCA TTTAACGGCAGCTTG TERM 5521 4300355 - 4300324 - g 70 -6 -4.19238 | TCGTGAATTTGAAAA TTTTGTCGCC TGGGAAAACAGC GGCGACAAAA CCTACCTGGAGCAAC CJA_3600 4297361 - 4301173 + | hypothetical protein TERM 5522 4301226 - 4301236 + G 74 -8.2 -3.97139 | ACGCTTACTCATCGC CGCC CAG GGCG TTGTTATTGCACTTG TERM 5523 4302393 - 4302381 - g 91 -3.3 -5.48825 | GAGTACGCAAAAAAA CAGCC TCT GGCCA ACGCCATCGCTACTG TERM 5524 4302432 - 4302419 - g 71 -2.4 -5.0133 | opp_overlap 4302420, overlap 4302420 TACTGCTGCAAAAAA TTCC CGCTCC GGAA TTTTCAGTGACCACA gly43I 4301188 - 4302849 + | beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43I TERM 5525 4302854 - 4302885 + T 100 -18.9 -3.98842 | opp_overlap 4302851 4302850 TGGTTAAGTAACTGC TGCACCTGGCCTA AAACAA TAGGCCAGGTGCA TTTATAACTCTTATG CJA_3602 4305625 - 4302896 - | peptidase, M16 (pitrilysin) family TERM 5526 4303122 - 4303134 + g 88 -2 -5.58209 | overlap 4303111 CTTGTGAATTTATCA TTCA ATTGC TGAA TTTTTTTGGCTTTCA TERM 5527 4305281 - 4305299 + g 74 -3 -5.00616 | overlap 4305284 TATAAATTTCCGCAG CTCTCCCG GCT CTGGATAG TTTTTTGAGCCGCCC TERM 5528 4305476 - 4305494 + g 72 -7.4 -3.93782 | overlap 4305477 TATATGTTCGTAATT TGCTGAGT CAA ACTCAGCC TTTGGTATTGCCTGA TERM 5529 4305477 - 4305493 + g 71 -10.9 -2.95787 | overlap 4305476 ATATGTTCGTAATTT GCTGAGT CAA ACTCAGC CTTTGGTATTGCCTG TERM 5530 4306249 - 4306209 - H 85 -12.2 -3.46824 | gap 1, overlap 4306210 4306212 TTATTAAGTAACTAA TCATTATGGTCACTCAGTA ATTA TA-TGAGTGACCATAATGC AATGGAAAATTGAAA TERM 5531 4306248 - 4306210 - H 90 -15.7 -2.67613 | gap 1, overlap 4306209 4306212 TATTAAGTAACTAAT CATTATGGTCACTCAGTA ATTA TA-TGAGTGACCATAATG CAATGGAAAATTGAA TERM 5532 4306246 - 4306212 - H 79 -12.5 -2.87354 | gap 1, overlap 4306210 4306209 TTAAGTAACTAATCA TTATGGTCACTCAGTA ATTA TA-TGAGTGACCATAA TGCAATGGAAAATTG TERM 5533 4306551 - 4306538 - g 74 -3.1 -4.96501 | TTTGATAAAAATAAA GTGAA GCAT CTCAC TGCGGAGCAGTATGG CJA_3603 4306328 - 4308037 + | hypothetical protein TERM 5534 4309249 - 4309263 + G 79 -4.3 -5.00616 | GACCCGGCATATGTT GAGAT TACCT ATCTC TTTTTTCGAAAAGCG CJA_3604 4308275 - 4310614 + | putative toxin transporter CJA_3605 4310619 - 4311875 + | putative toxin secretion, membrane fusion protein TERM 5535 4311909 - 4311927 + G 81 -9 -4.13767 | TGTCGATTGATATGT TTAATGAG TCC CTCATTAA TTTTGAGGTCACAAA TERM 5536 4311992 - 4312005 + G 74 -2.3 -5.06414 | opp_overlap 4311985 4311993, overlap 4311993 CCTGAAGACTCCACA AGTGG GGCG CCACA TTTTTCTTCCGCAAA TERM 5537 4312563 - 4312581 + G 71 -2.5 -4.9792 | GTGGAATTGATCGCC TTAATGA CTACA TCGTTAA TTTTTATATCAAGTC CJA_3606 4311905 - 4313560 + | hypothetical protein TERM 5538 4313937 - 4313913 - T 100 -18.7 -3.45945 | TTGAGCGACAAGGAA GTCATCACGCG TAA CGCGTGATGAC GAAAAGGTGATTCGT CJA_3607 4314382 - 4313978 - | PIN (PilT N terminus) domain CJA_3608 4314612 - 4314379 - | possible virulence-associated protein CJA_3609 4315576 - 4314683 - | transcriptional regulator, LysR family TERM 5539 4315113 - 4315102 - G 77 -5.8 -4.70659 | GGCGATATTCAAAAA TGCC CTTG GGCA GTTCACCGCTGGCGC TERM 5540 4315380 - 4315403 + g 77 -6.6 -4.45544 | opp_overlap 4315355 4315378 4315376, overlap 4315381 TGTTCCAGCAACAGG CGCCCGGC AGCGGTGA GCCGGGCC TTTTGCTTGCTGCGA TERM 5541 4315381 - 4315402 + g 70 -10.1 -3.26844 | opp_overlap 4315355 4315378 4315376, overlap 4315380 GTTCCAGCAACAGGC GCCCGGC AGCGGTGA GCCGGGC CTTTTGCTTGCTGCG TERM 5542 4315505 - 4315519 + g 82 -2.8 -5.28778 | opp_overlap 4315490 4315492 CAGCGCCTCGGCCGC GGCA CCAAAAC TGCC TTTTTTATCGATCAT CJA_3610 4315749 - 4316180 + | DoxD-like family protein TERM 5543 4316216 - 4316197 - f 77 -12.1 -2.78508 | opp_overlap 4316212, overlap 4316196 4316194 CACGTGTGAAAACAT GGCGGGC AATGGG GCCCGCC CCCACCACTGGAGGT TERM 5544 4316521 - 4316573 + G 81 -4.3 -5.04385 | gap 3, overlap 4316522 CAGTTGATGAGTGCC GGCAGCGGTATTCGCCACAGCGAG TTCAACCC CTCGC-GT-GC-AACACCGCTGCA TTTTTTGCAGATCTG CJA_3611 4316236 - 4316928 + | Protein yhhW CJA_3612 4316955 - 4317248 + | Plasmid maintenance system killer protein TERM 5545 4317422 - 4317409 - g 100 -5.9 -5.7946 | overlap 4317411 TGGTTAATAAAAAAA GAGGG GTAA CCCCC AGCACGGCCTTGCGC TERM 5546 4317421 - 4317411 - g 85 -8.2 -4.54306 | overlap 4317409 GTTAATAAAAAAAGA GGGG TAA CCCC CAGCACGGCCTTGCG TERM 5547 4317434 - 4317446 + G 70 -6.9 -4.06993 | CCCCAGCACGGCCTT GCGCT TGG GGCGC TTCTTTGGTGTATCG CJA_3613 4317258 - 4317575 + | helix-turn-helix domain protein CJA_3614 4319059 - 4317944 - | ABC-type multidrug transport system, permease component CJA_3615 4319987 - 4319043 - | ABC-type multidrug transport system, ATPase component TERM 5548 4319532 - 4319546 + g 90 -7.8 -4.83169 | opp_overlap 4319524 CAAGGTAGCGGCAGC CAGTGC CAG GCGCTG TTTTTGTCCGCCGCT CJA_3616 4320940 - 4319984 - | membrane-fusion protein TERM 5549 4320338 - 4320324 - G 73 -11.4 -2.66316 | overlap 4320321 TCTTCCAGCACACCA TCGCGC GTG GCGCGA ATGCTCAAATCTTCC TERM 5550 4320825 - 4320799 - G 80 -11.6 -3.40403 | CCTGTTGCACGATAA TTTCGCTGTCGG TGG CCAACAGCGTAA GGCGATCGCGCTCCA CJA_3617 4321624 - 4320947 - | Transcriptional regulator CJA_3618 4322799 - 4321735 - | ABC transporter, ATP-binding protein TERM 5551 4321891 - 4321860 - G 76 -12.4 -2.52676 | gap 1, overlap 4321877 CACCCTGCCAACCGA GCTGGATATCCACCA CAC TGGTGG-CACCCAGC ATATGGACTTCATCC TERM 5552 4322019 - 4322002 - G 72 -8.3 -3.85698 | opp_overlap 4322011 TGCCTCCGGCAGAAA GGCCGCC GCCA GGGGGCC AAATGGGGTAGCCAC CJA_3619 4324470 - 4322815 - | Binding-protein-dependent transport systems inner membrane component domain protein CJA_3620 4325536 - 4324493 - | putative Bacterial extracellular solute-binding protein CJA_3621 4326211 - 4325639 - | putative lipoprotein TERM 5553 4325745 - 4325709 - G 90 -9.4 -4.56883 | gap 1, opp_overlap 4325711 4325740, overlap 4325710 GGAATATCAAACAAA CGCTGGCGAAGCTGGGT TTTG ACCCCG-TCCGCCAGCT CACCCAAACGGCTGA TERM 5554 4325744 - 4325710 - G 89 -12.9 -3.33045 | gap 1, opp_overlap 4325711 4325740, overlap 4325709 GAATATCAAACAAAC GCTGGCGAAGCTGGGT TTTG ACCCCG-TCCGCCAGC TCACCCAAACGGCTG CJA_3622 4326930 - 4326247 - | fumarylacetoacetate hydrolase family protein TERM 5555 4326808 - 4326793 - G 93 -2.5 -5.61881 | gap 1 TTTGAAAAAGAAAAA CG-GCG GTTCG CGCTCG GGGTCATGGCCCATT CJA_3623 4328803 - 4326923 - | sensory box protein TERM 5556 4328402 - 4328392 - G 74 -2.4 -5.06414 | TGGCGTTAACAAAAA GGGC CGT GCGC AACTGGAACAAGGGG TERM 5557 4328536 - 4328547 + g 72 -7.2 -4.26076 | opp_overlap 4328521 4328536 4328531 GCAGTTCAAACTGAA CCGG GCGA CCGG TTTTAGTCCCGATCA CJA_3624 4329487 - 4328804 - | anhydrase, family 3 protein TERM 5558 4329376 - 4329366 - Gg 74 -3.2 -4.96848 | GCGCTCATACAAAAA CCTC TCG AAGG CTCACCAGGAGCCCG TERM 5559 4329547 - 4329527 - gH 73 -10.4 -2.95223 | overlap 4329529 CAACCCGAGCACATA GAGCCGGC CATCC GCCAGCTC ATCGACGAAGGGCGC TERM 5560 4330158 - 4330144 - gH 70 -9.2 -3.31461 | overlap 4330145 TATGTACGCCGACAA CCGCGC CCT GCGCGA GGAAATTTACCGCGC TERM 5561 4330157 - 4330145 - gH 71 -10.5 -2.58663 | overlap 4330144 ATGTACGCCGACAAC CGCGC CCT GCGCG AGGAAATTTACCGCG TERM 5562 4330224 - 4330208 - gH 100 -10.1 -5.15969 | opp_overlap 4330219 4330220 GCCGAAGGCAAAAAA GCGGACG GCT CATCCGC GGCGGAATTTGACAA TERM 5563 4330353 - 4330335 - gH 72 -6.6 -4.25104 | CCCTCGCCAGCAAAA TGGCCGAG TCA CCCGCCCA GGTGCTGCAATTCCT TERM 5564 4331277 - 4331295 + GH 79 -10.2 -3.63515 | TTAGCCATATTTTTG CCGGTGGT TAC GCCGCCGG TTATTACAGCTACAA prlC 4329335 - 4331518 + | oligopeptidase A CJA_3626 4331518 - 4331763 + | hypothetical protein TERM 5565 4332752 - 4332768 + G 76 -9.3 -3.84451 | ATGGCACCACTCGCT CGGGCGG CAG CCGCGCG TTTAACTTTGCCAAC TERM 5566 4333876 - 4333866 - g 70 -6.8 -4.00526 | AACGGCAGAAGTAAA CCAG GCA CTGG GCAACTGGGGTATTG CJA_3627 4332343 - 4335387 + | TonB-dependent receptor TERM 5567 4335432 - 4335450 + F 100 -11.7 -5.37043 | opp_overlap 4335432 GCATGGAACAAGAAA GCCGCTG TCTGC CAGCGGC TTTTTTATCTGCCCT TERM 5568 4335450 - 4335432 - f 100 -11.7 -4.46854 | opp_overlap 4335432 GCATGGAACAAGAAA GCCGCTG TCTGC CAGCGGC TTTTTTATCTGCCCT CJA_3628 4335500 - 4336231 + | hypothetical protein CJA_3629 4336360 - 4337304 + | hypothetical protein CJA_3630 4337312 - 4338820 + | tryptophan halogenase CJA_3631 4344532 - 4338860 - | Alpha-2-macroglobulin family N-terminal region family TERM 5569 4341116 - 4341095 - G 70 -5.1 -4.36914 | overlap 4341108 TTCGCGCTTATAAAA CACACCG TGTAAATC CGGTGCG CGGAAATTGGTGAGG CJA_3632 4347788 - 4344576 - | HsdR TERM 5570 4344925 - 4344949 + g 73 -3.6 -4.83722 | gap 1 ATACTGATCAGCGCA TCCATTACCTC CGCA GCGGTAA-GGA TTTTGTTATGGTATT TERM 5571 4346421 - 4346433 + g 88 -2 -5.52986 | TTTTTTACCGATCAC TTCA CCGCT TGAA TTTTTTTCATCGACT CJA_3633 4348048 - 4348587 + | hypothetical protein TERM 5572 4348788 - 4348806 + G 71 -3 -4.74132 | overlap 4348789 TCAGTGAAGATCTGG ACTTCGCC GGC GGCAAAGA TTTTTCATCAGGTAT CJA_3634 4348574 - 4349494 + | hypothetical protein TERM 5573 4350349 - 4350327 - g 79 -2 -5.2204 | CAGAATCAAGAAAAA TATGCAGC GATGACA GTTGCATA CGCTGAAGCCTGGAT CJA_3635 4349472 - 4351373 + | hypothetical protein CJA_3636 4352421 - 4351483 - | hypothetical protein TERM 5574 4351590 - 4351608 + g 70 -6 -4.25104 | opp_overlap 4351592, overlap 4351582 TTTTTTTGTCTCCAA GATGAAGA CTT TCTACATC TTTTGATAGCGACCG CJA_3637 4352942 - 4352418 - | hypothetical protein TERM 5575 4352880 - 4352894 + g 79 -4.2 -5.10064 | opp_overlap 4352880 TTTTCTATCACCAGA GGCCAT GCG ATTGCC TTTTTCTATGTTCAG hsdS-1 4354153 - 4352957 - | type I restriction system specificity protein CJA_3639 4355606 - 4354146 - | ATP-dependent DNA helicase TERM 5576 4354407 - 4354422 + g 70 -6.8 -4.14615 | overlap 4354397 4354396 GCAATCGGTCGTAAT CGTCCG GTTT TGGACG TTTTCGGGGGTTTTT TERM 5577 4355122 - 4355110 - G 75 -5.5 -4.62069 | CCTTGAGCGGAAAAA CGCTG TTC CAACG GTGTGAGGTCTAGCT TERM 5578 4355495 - 4355518 + g 72 -4.6 -4.65168 | gap 1, opp_overlap 4355509 TCAGTTTACCGCCGC CGG-TATTGGC AAA GGCAATAACCG TTTTTGCGATCTGGT CJA_3640 4357168 - 4355603 - | type I restriction-modification system specificity subunit TERM 5579 4355963 - 4355979 + g 77 -5.8 -4.72272 | gap 1, overlap 4355965 TAAAATTTCACTTTT GC-GCGG ATGG CCGCTGC TTTTTGATGAAGAGC TERM 5580 4356917 - 4356893 - G 71 -2.9 -4.7497 | overlap 4356896 4356897 TTTACCCAGTAAAAA TG-ACCAGCGC GCTTT GCGC-GGTACA AAGAAAATATTCTCA TERM 5581 4357231 - 4357254 + r 82 -13.2 -2.88544 | opp_overlap 4357231 CATATCAATAAAAAA GCCATCCCGT TGGC ATGGGATGGC TGTATGCCGATCAGA TERM 5582 4357254 - 4357231 - R 100 -11 -5.5353 | opp_overlap 4357231 CATATCAATAAAAAA GCCATCCCGT TGGC ATGGGATGGC TGTATGCCGATCAGA CJA_3641 4359524 - 4357272 - | probable orn/arg/lys decarboxylase TERM 5583 4358149 - 4358138 - G 70 -4.4 -4.57569 | CGAGCGCTTCAAAAA TCGA TTCT TCGA CCAGTGCACGCCCCC TERM 5584 4358172 - 4358214 + g 75 -11.4 -3.01924 | gap 1 ACGCCCCCCGGGCGC TTCCATCATCGCCGCC-GC CACATC GCAGGAGGCAATGATGGAA TATTGCGGCGAGGTG TERM 5585 4359011 - 4358991 - G 88 -8.9 -4.62336 | AGGCGATTTCAAAAA GGCCACGCC GCC GGAGTGACC GGGGCAGTGCCAGGA TERM 5586 4359909 - 4359881 - R 71 -9.6 -3.25072 | gap 1, opp_overlap 4359899, overlap 4359876 TTTATGACAATTTAA CCCCGGG-CAAAC GCAG GCTTGTCCCGGAG CCAATCCGGGCAGTA CJA_3642 4360408 - 4359929 - | putative helicase TERM 5587 4360587 - 4360569 - g 72 -4.4 -4.72272 | opp_overlap 4360570 4360570, overlap 4360570 CCGGTTGAGGAAAAA GCCCAGCG CGT CGCCGAGG TTTTCCACTCGGTCG TERM 5588 4360637 - 4360651 + G 73 -11.4 -2.57463 | overlap 4360636 GAACGACCTGATGTC CGGTGG TAT CCACCG CTTATGGAAACGCTT TERM 5589 4360990 - 4360953 - g 72 -7.8 -3.92641 | gap 3, opp_overlap 4360983 AATGTCACCGATAAA GACCTG-GCACTGCGC-GC CAT GCAGCGC-GTGCTCAAGCC CGGTGGCCGGCTGCT CJA_3643 4360512 - 4361261 + | ubiquinone/menaquinone biosynthesis methyltransferase UbiE TERM 5590 4361774 - 4361760 - g 76 -4.2 -4.99435 | overlap 4361762 CCGAAGAATTAAAAA CCCTGC CCG GCAAAG CAGAACTGAAAGATT CJA_3644 4361261 - 4361878 + | hypothetical protein TERM 5591 4362020 - 4362004 - g 76 -10.8 -3.3164 | AAGCTATTTCCACAA CCGCGC CTGTC GCGCGG TGAGCGCCTGCGCCG TERM 5592 4362669 - 4362652 - g 100 -8.3 -5.22312 | opp_overlap 4362653, overlap 4362654 ACCGACATGAAAAAA CTCGCCG AGCG CGGCGTG GAGATTTTTTTCACC TERM 5593 4362653 - 4362673 + G 85 -3.1 -5.40072 | opp_overlap 4362652 4362654 CCGACATGAAAAAAC TCGCCGAGC GCG GCGTGGAGA TTTTTTTCACCCAGG TERM 5594 4362825 - 4362849 + G 74 -9.9 -3.53563 | opp_overlap 4362822 4362825, overlap 4362827 CGCCGACCAATACTA CCTGGCGCGCA ACC TGCTCGCCATG TTTCGCCGCGACTAT TERM 5595 4362827 - 4362847 + G 76 -11.1 -3.34517 | opp_overlap 4362825 4362822, overlap 4362825 CCGACCAATACTACC TGGCGCGCA ACC TGCTCGCCA TGTTTCGCCGCGACT TERM 5596 4362912 - 4362893 - g 72 -7.8 -3.92075 | overlap 4362894 AGCTGCATGTAGAAA GTGGCTGG GTGC CCAGCCAT GTGCGCGTGGAAGAA TERM 5597 4362911 - 4362894 - g 75 -11.3 -2.94924 | overlap 4362893 GCTGCATGTAGAAAG TGGCTGG GTGC CCAGCCA TGTGCGCGTGGAAGA ubiB 4361875 - 4363533 + | 2-polyprenylphenol 6-hydroxylase CJA_3646 4363805 - 4363563 - | hypothetical protein CJA_3647 4365887 - 4363827 - | putative DNA helicase TERM 5598 4364530 - 4364506 - G 78 -5.5 -4.85782 | CCCGCGAAAAACAAA CCATTGGCCCG CTG CGCGCCCAAGG CAGCCAGAAAACGCA TERM 5599 4364714 - 4364701 - G 72 -8.1 -3.90316 | ACGCGCTCAAAAATA GCCCA TAAT TGGGC GCGGCGATTTTCGGG TERM 5600 4365822 - 4365804 - G 74 -7.4 -4.06502 | opp_overlap 4365804 CACCTGCAAATCAAA GGCCGT GGTTTTA ACGGCC TTTTGTTCCTCGCCG TERM 5601 4365804 - 4365822 + g 84 -7.4 -4.71426 | opp_overlap 4365804 CACCTGCAAATCAAA GGCCGT GGTTTTA ACGGCC TTTTGTTCCTCGCCG CJA_3648 4369665 - 4365901 - | hypothetical protein TERM 5602 4366215 - 4366202 - G 70 -5.3 -4.32049 | opp_overlap 4366210 CACAACTCAGCAAAA GCAAT AGAT ATTGC AGGTGTAATATATTC TERM 5603 4368575 - 4368600 + g 72 -4.7 -4.62783 | gap 1, opp_overlap 4368575 GGTGGAACGCCAAAA CGCTCAAGGTCG GCA TGACCAT-AGCG TTTTTCGGATAAATA TERM 5604 4369301 - 4369313 + g 75 -5.5 -4.70319 | TTGGTCGTAATCAGC CGGGT ACA ACCTG TTTTACTTTTACTAA TERM 5605 4369566 - 4369550 - G 83 -6.5 -4.92314 | overlap 4369541 ACCAACCCAGAAAAA CCTGGCA ACT TGGCAGG ATAGGAAATACCGGC CJA_3649 4372679 - 4369665 - | possible DNA methylase TERM 5606 4369732 - 4369742 + gr 70 -4.6 -4.56597 | TTCACTGCAATTCTG CCCG ATT TGGG TTTTTCAAAGGGGCG TERM 5607 4369868 - 4369884 + gr 73 -9.5 -3.43492 | opp_overlap 4369872 AGTAGGCGTGGCGGA CGAAGAA GGA TTCTTCG TTGTAGTCGGTGTCG TERM 5608 4370822 - 4370853 + gr 70 -6.6 -4.09685 | GGTGCTGGGTAAGCT GTTCGCGCAGAG GTTGCAGA CTTTGCTCGAAC TTTTCCCAGATCACA TERM 5609 4372078 - 4372058 - GR 72 -7.5 -3.90112 | opp_overlap 4372069, overlap 4372062 GTGGGTCGAAGTAAA TGCACTGCA CCT TGCCGCGCA GTTGCTCGCGCTCGG CJA_3650 4373478 - 4372633 - | hypothetical protein TERM 5610 4373541 - 4373529 - R 84 -4.7 -5.35224 | overlap 4373530 GCCAGAAAAAGAAAA GCCCC AGG GGGTC GGCACTCGCTCGGGA TERM 5611 4373685 - 4373654 - R 95 -13.2 -3.85698 | overlap 4373657 4373681 4373682 GCGTTCTGGCACAAA CCACCATTTTGTTG GCAT CAACAAAATGGCAG GCTAAATGCCTGAAA TERM 5612 4373682 - 4373657 - R 82 -13.5 -3.00946 | overlap 4373654 4373681 TTCTGGCACAAACCA CCATTTTGTTG GCAT CAACAAAATGG CAGGCTAAATGCCTG CJA_3651 4376429 - 4373742 - | putative restriction endonuclease TERM 5613 4373865 - 4373905 + g 72 -8.3 -3.75898 | opp_overlap 4373856 4373857, overlap 4373866 4373892 AGCAAAGGCCCAGCG GCC-CTGGGTGCCCAGGCG GTTCA CGCC-GGGTATCCAGCGGG TTTCCATAGTTTCTT TERM 5614 4373866 - 4373904 + g 75 -11.8 -2.84454 | opp_overlap 4373856 4373857, overlap 4373865 4373892 GCAAAGGCCCAGCGG CC-CTGGGTGCCCAGGCG GTTCA CGCC-GGGTATCCAGCGG GTTTCCATAGTTTCT TERM 5615 4375403 - 4375378 - G 85 -8.3 -4.49981 | CAGACCACGATAAAA CAGGGTGGTAC GCGG ATACCAGCCTG CTGCCATAGGTTGAA TERM 5616 4375490 - 4375511 + g 100 -10.1 -5.04385 | gap 1, overlap 4375481 4375509 GTTTGAGCGGGTCCA GGTCGGCGGC CTT GCC-CCGGCC TTTTTTGGGCATGTC TERM 5617 4376351 - 4376379 + g 75 -5.3 -4.64657 | gap 1 CATTGGCGTTGGCAT CGGCCAGGTGGT CGAGGA ATCG-CTGGCCG TTTTTGCCGATTTGC TERM 5618 4377784 - 4377836 + G 82 -2.6 -5.40474 | gap 1, opp_overlap 4377787, overlap 4377785 4377787 TGCATTGCCGGCGAT GAATTGCTGCGCCAATTTGCCGATA GTAT TACCGGCTTACTGGCGC-GCAATGA TTTTTTTGCACGCCT TERM 5619 4377833 - 4377787 - g 85 -13.1 -3.14211 | gap 1, opp_overlap 4377785 4377784 4377787 ATTGCCGGCGATGAA TTGCTGCGCCAATTTGCCGATA GTAT TACCGGCTTACTGGCGC-GCAA TGATTTTTTTGCACG CJA_3653 4376881 - 4378947 + | hipothetical sensory box/GGDEF family protein CJA_3654 4378925 - 4382707 + | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein protein dtd 4383151 - 4382711 - | D-tyrosyl-tRNA(Tyr) deacylase TERM 5620 4382880 - 4382890 + g 79 -2.4 -5.21709 | GCCGAGGAAAAACTG GGGC GCA GGCC TTTTTTGGTATCCGC pip 4384125 - 4383151 - | proline iminopeptidase TERM 5621 4384019 - 4383965 - G 70 -5 -4.49556 | gap 2, opp_overlap 4384016, overlap 4383967 4384017 TCGGGATCAAAGAAA CGGCGGTCGTATTTGCCACAGCCGGC ACCTG GCCCGCCGT-GCACAAACAAC-ACCG GAATACCCTGGGGAT CJA_3657 4384376 - 4385110 + | predicted transcriptional regulator TERM 5622 4385214 - 4385196 - g 77 -10.2 -3.58864 | overlap 4385194 CTACCACGATAAAGA GTGGGGCG TTC CGCTCCAC GACGAGCAAAAACTG TERM 5623 4385648 - 4385660 + G 70 -4.1 -4.69656 | TGCAAGCAGCCGGGA TGGTT AAT GACCA TTTTATTACCTGCTT tag 4385107 - 4385739 + | DNA-3-methyladenine glycosylase I TERM 5624 4385735 - 4385723 - f 70 -4.7 -4.39571 | GGGACAAACGCAAAA CCCGC ACA GCGCG TTAACACTCCTTGAA TERM 5625 4385956 - 4385921 - g 70 -6 -4.18058 | AACTACAGGTTAAAA CCATCGCCCAGGGTTT GAAA AATCCCTGGGGCCTGG CCTTCCTGCCCGATG CJA_3659 4385809 - 4386951 + | hydrophobic compound transport factor TERM 5626 4387307 - 4387325 + G 74 -3.1 -5.00616 | CTACCCGGCATCTCA TCGCCAT CAACA GTGGTGA TTTTTTAAGCGCGAA CJA_3660 4386952 - 4387344 + | Uncharacterised protein family (UPF0131) superfamily TERM 5627 4388197 - 4388165 - g 79 -4.8 -5.00616 | gap 1 GCCTGTGCCAAAAAA CCACACGCCTGGTGC AGGA ACACCTGG-GTCTGG ATAAGAACGATTGCA hemH 4387465 - 4388499 + | ferrochelatase CJA_3662 4388625 - 4389170 + | OmpA-like transmembrane domain protein TERM 5628 4389220 - 4389190 - T 93 -14.8 -3.39018 | opp_overlap 4389195, overlap 4389195 TTATCACGCTAAACA GAAAAGCAGCCCCG TGA CAGGGCTGCTTTTT TATTAACATAAATCG TERM 5629 4389195 - 4389215 + T 100 -12.5 -5.46657 | opp_overlap 4389190 4389195 ACGCTAAACAGAAAA GCAGCCCCG TGA CAGGGCTGC TTTTTTATTAACATA TERM 5630 4389215 - 4389195 - T 100 -14.7 -4.79451 | opp_overlap 4389195, overlap 4389190 ACGCTAAACAGAAAA GCAGCCCCG TGA CAGGGCTGC TTTTTTATTAACATA CJA_3663 4390052 - 4389243 - | hypothetical protein TERM 5631 4390103 - 4390126 + r 100 -8.1 -5.26316 | opp_overlap 4390103 ACTCACATAAAAAAA TCCCCATCG CTTTCA CGTTGGGGA TTTTTTATGGCCTGC TERM 5632 4390126 - 4390103 - R 100 -8.8 -5.72616 | opp_overlap 4390103 ACTCACATAAAAAAA TCCCCATCGC TTTC ACGTTGGGGA TTTTTTATGGCCTGC typA 4392049 - 4390226 - | GTP-binding protein TypA TERM 5633 4392427 - 4392412 - g 70 -10.4 -3.13772 | overlap 4392409 4392410 ACTGGAGGAAAACCA GCGGCT CGCC AGCCGC GCAGACATCGCCAAT CJA_3665 4392299 - 4394869 + | sensory box/GGDEF family protein TERM 5634 4397440 - 4397450 + G 70 -6.8 -4.08216 | opp_overlap 4397439 AATTACATCGAAATT GCCA GTG TGGC TTTTGAAGCAGATCA TERM 5635 4397700 - 4397726 + G 71 -9.5 -3.44321 | gap 1, opp_overlap 4397700 4397701, overlap 4397698 4397701 TGACGCCATCGACAA TCGTC-CCATCG ATAC CGATGGTGACGG TGTTTGGGATTTCAT CJA_3666 4394986 - 4398612 + | Thrombospondin type 3 repeat family TERM 5636 4398646 - 4398633 - f 100 -9.5 -5.1861 | opp_overlap 4398633 CCGACTACCAAAAAA GGGGG CTCG CCCCC TTTTTTTATTGTCCG TERM 5637 4398633 - 4398646 + F 100 -9.5 -5.88565 | opp_overlap 4398633 CCGACTACCAAAAAA GGGGG CTCG CCCCC TTTTTTTATTGTCCG CJA_3667 4398759 - 4398896 + | hypothetical protein CJA_3668 4399112 - 4399696 + | hypothetical protein TERM 5638 4400426 - 4400413 - g 82 -3.1 -5.29385 | gap 1 AACTCAAGGAAAAAA CCT-CC CCA GGCAGG GTACTGATCAAGCGT CJA_3669 4399698 - 4400531 + | hypothetical protein TERM 5639 4400629 - 4400641 + G 78 -9.1 -3.97368 | CGTTGAGGTAGCCAC TGCCG TAC CGGCA TTTGTGGGTTACACA TERM 5640 4400998 - 4401010 + G 82 -7.7 -4.56775 | CTATCTCCTGTACCG CAGCA TGA TGCTG TTTTTCCAAAACGGT TERM 5641 4401084 - 4401072 - g 76 -9.1 -3.73953 | opp_overlap 4401071 ATTACGCGCAGGAAA TCGCC GAA GGCGA ATTGAGTGCGGGCGT TERM 5642 4401146 - 4401119 - g 76 -7.8 -4.20768 | gap 1, opp_overlap 4401126 ACCCTCAAGAAAGAA CAGGAACCCACCA TGG TGGTG-ATTCCCG AAGCGGTATCCCTGT CJA_3670 4400549 - 4402192 + | hypothetical protein TERM 5643 4402645 - 4402616 - g 72 -8.5 -3.72576 | GCCTGCTCGACGAAA CCAGTGCACCCAC CATG GTGTGGACACTGG CCAATGCCTGGCCCA CJA_3671 4402300 - 4402758 + | conserved hypothetical phage tail region protein TERM 5644 4402802 - 4402831 + G 90 -9.4 -4.50058 | gap 1, overlap 4402802 4402803 TTTAGTCTCAGCGGA C-TTGCAGGAGGA GATTA TCCTCCTGCAGCG TTTTACTTCTCGGTC TERM 5645 4402803 - 4402829 + G 81 -13.1 -2.56864 | overlap 4402802 4402802 TTAGTCTCAGCGGAC TTGCAGGAGGA GATTA TCCTCCTGCAG CGTTTTACTTCTCGG TERM 5646 4402871 - 4402899 + G 100 -16.1 -3.10236 | ACGACCCTGGGCCTG ACCGATACCTCCT TCC AGGAGGTATCGGG TATTGGGGTTGAGTT CJA_3672 4402781 - 4403257 + | conserved hypothetical phage tail region protein CJA_3673 4403293 - 4403460 + | hypothetical protein TERM 5647 4403659 - 4403648 - g 88 -2.2 -5.52384 | GGGCCAGGAAAAAAA GTAC ACCC GCAC CGAACCGGAAAAACT CJA_3674 4403463 - 4404143 + | hypothetical protein TERM 5648 4404645 - 4404624 - g 71 -10.9 -2.85216 | opp_overlap 4404606 4404641 CACCAGCCATAAGGA GCTGGTGCA GTTT TACACCAGC GATTGGGATTTTATG TERM 5649 4404908 - 4404934 + G 77 -11.6 -3.24017 | opp_overlap 4404911, overlap 4404902 CCAGCCAGGGCGATA TCACTTCCGCCA CCC TGGCTGAGGTGA TTGGCTTATCGGCTT CJA_3675 4404148 - 4405941 + | Rhs element Vgr protein CJA_3676 4405954 - 4406244 + | PAAR motif family TERM 5650 4406486 - 4406497 + G 71 -2.2 -5.00616 | overlap 4406473 CGCGACCTGATCGAG CAGG CCGT CTTG TTTTTTGAGCCGCGC CJA_3677 4406255 - 4406662 + | GPW / gp25 family protein TERM 5651 4407386 - 4407370 - g 72 -4.3 -4.72272 | opp_overlap 4407385, overlap 4407371 4407374 GCTGCGCAGCAAAAA CCACGAC CCG GCCCTGG CCCTGCGTGTGGCCT TERM 5652 4407844 - 4407901 + G 81 -11.1 -3.59979 | gap 2, overlap 4407882 CCAGAATAATGGCGT GCCCTGGCAGGGCGGCGATGGTCGCAG CAGCGA CGGCG-CCAGCTCCGCGC-GCCTGGGC TTTGCCCTGGCCAGC TERM 5653 4408154 - 4408142 - g 70 -6.2 -4.24075 | ATCGATGAATACAAA CCCG CCTAC CGGG CCACGGACGCCAATA TERM 5654 4408420 - 4408431 + G 70 -7.2 -4.12942 | CATCGGCCAGTTATC GGCG CTCT CGCC TTTTACGCCCTTTGG CJA_3678 4406696 - 4410454 + | hypothetical protein TERM 5655 4410522 - 4410508 - g 93 -8.5 -5.11937 | AACAAGTTCAAAAAA GGCCG CCTGC CGGCC GAACAGGACTTCGCC CJA_3679 4410463 - 4411233 + | hypothetical protein CJA_3680 4411246 - 4411578 + | hypothetical protein TERM 5656 4412241 - 4412253 + G 91 -10.5 -4.19678 | GATGTGTTTTTCCAG GCCGC GCG GCGGC TTTCTTCCCATGTGC TERM 5657 4412490 - 4412478 - g 73 -9.1 -3.60296 | GACGGCGATGGCAAA CCGGT ACA ACCGG GCCAGGACGAACACT TERM 5658 4412823 - 4412798 - g 77 -11.8 -3.16564 | TGTCTATGGCATCAA CAGCGCCGGG GTGCCA CCCAGCGCCG GGCTGGAACGGCGCC CJA_3681 4411575 - 4414100 + | hypothetical protein TERM 5659 4415794 - 4415782 - gT 74 -10.5 -3.15583 | overlap 4415780 CGAAGACAGGCAACA GGGGG CAT CCCCC GTACAACAACAGGCA TERM 5660 4417134 - 4417091 - gT 93 -14.6 -3.0464 | gap 1, overlap 4417079 4417082 4417114 AACCGACGGGCAACA GCCAGCGCCGCCCCCGA CATCAACCCCC TCG-GGGCGGCGCAGGC AAGCACGGAATACGC CJA_3682 4419741 - 4419340 - | hypothetical protein TERM 5661 4419496 - 4419465 - GgT 71 -9.5 -3.14463 | gap 1, overlap 4419481 AACCGCTTGCAGGAA CGCCATCGGCAGCA GATGT TGCC-CCGATGGCA AACACGCCTTCCGGC CJA_3683 4419847 - 4419710 - | hypothetical protein TERM 5662 4420024 - 4420006 - gH 70 -8.8 -3.34517 | opp_overlap 4420008, overlap 4420004 AGGCGCCCTCAAACA GGCCCAGT GGA ACTGGGTC TTGGCACAACTGTTC TERM 5663 4420008 - 4420022 + GH 70 -10 -3.02263 | opp_overlap 4420006 4420004 GCGCCCTCAAACAGG CCCAGT GGA ACTGGG TCTTGGCACAACTGT TERM 5664 4420193 - 4420174 - gH 70 -9.2 -3.34398 | overlap 4420172 4420175 GCGCCTGGTCAAACA GCGCCTGG CCGC CCAGGCGG ATAGCGCCGCCCGCT TERM 5665 4420192 - 4420175 - gH 78 -12.7 -2.60496 | overlap 4420174 4420172 CGCCTGGTCAAACAG CGCCTGG CCGC CCAGGCG GATAGCGCCGCCCGC TERM 5666 4420777 - 4420803 + GH 74 -8.7 -3.87551 | gap 1, opp_overlap 4420772 4420777 GCTGGACGAAGACTA CTG-GCGCCTGC AAGT GCAGGAGCGCAG TTTCGATTTACTGCT CJA_3684 4414196 - 4420903 + | hypothetical protein TERM 5667 4421167 - 4421191 + G 82 -2 -5.40072 | gap 1, overlap 4421168 4421169 CTCTGCTTGATTCCC CA-CCTGCGCC CCCA GGCGCTGGATA TTTTTTTCACCCAGA TERM 5668 4421168 - 4421189 + G 75 -7.1 -4.34482 | overlap 4421167 4421169 TCTGCTTGATTCCCC ACCTGCGCC CCCA GGCGCTGGA TATTTTTTTCACCCA TERM 5669 4421169 - 4421188 + G 74 -10.6 -3.19966 | overlap 4421168 4421167 CTGCTTGATTCCCCA CCTGCGCC CCCA GGCGCTGG ATATTTTTTTCACCC TERM 5670 4421818 - 4421796 - g 88 -2.6 -5.58209 | CGAAACGGAAAAAAA CCTCGCCG GTGTATT CGACCAGG CGCAAAACAAAAACT CJA_3685 4420921 - 4422282 + | AAA superfamily ATPase TERM 5671 4423252 - 4423222 - g 70 -4.7 -4.56597 | gap 1, overlap 4423239 4423242 GCCGCCCTTGAAAAA GCGCAGCAAGCAAT CAAC AGTGCC-GCTGCAC CGACGGCAGATGCCA TERM 5672 4424018 - 4424000 - g 70 -3.8 -4.61873 | overlap 4424007 TGGTACAAATCAAAA GTAATAGC CAG GCCAATAC CCTGGTGCGCGATAA TERM 5673 4424391 - 4424380 - g 81 -4.4 -5.10077 | AAAGACCTGAAAAAA TTCG ACGA CGAA CGCAATCGCTGGCGC CJA_3686 4422289 - 4425321 + | hypothetical protein TERM 5674 4425365 - 4425326 - f 74 -8.4 -3.97674 | gap 1, opp_overlap 4425321 4425329, overlap 4425327 CGACGAGCTAAATAA TCGC-GGCCAGCGCCCGCC GAC GCCGGGCGCTGGAAAGTGA TTGCAATTGTTTACT TERM 5675 4425983 - 4425972 - g 77 -7.2 -4.56914 | CGATGCAAATGAAAA CCGG CGTG CCGG TGAATGATGATGTGG CJA_3688 4425431 - 4427080 + | hypothetical protein TERM 5676 4427444 - 4427422 - g 72 -7.7 -3.90291 | gap 1 ACCGGCGCAATTAAA TGCCC-ACGC CTAT GCGCAGGGCA GTGACATCCACGTCG TERM 5677 4428166 - 4428145 - g 72 -5 -4.60889 | overlap 4428146 AACCACCTGGAAAAA CCCCGTCC TGGCCG GGTCAGGG GTTAACCTTTCCGCT CJA_3689 4427105 - 4428400 + | hypothetical protein TERM 5678 4428738 - 4428716 - g 72 -7.7 -3.90291 | gap 1 ACCGGCGCAATTAAA TGCCC-ACGC CTAT GCGCAGGGCA GTGATATCCATGTCG TERM 5679 4428855 - 4428844 - g 77 -7.2 -4.54727 | CCCTGCAAATGAAAA CCGG CGTG CCGG TGAATGATGATGTGG TERM 5680 4429225 - 4429215 - g 74 -3.2 -4.99568 | GAAGATGAAAGAAAA GCCA GAT TAGC AGTTAACTTTTTGGT TERM 5681 4430517 - 4430497 - g 72 -6.9 -4.2717 | ATGATGTTATTAAAA TTCTTCCTA TAT TAGGAAGTA TAAAAAAGGCTTTAA CJA_3690 4428435 - 4430582 + | hypothetical protein CJA_3691 4430790 - 4431905 + | hypothetical protein CJA_3692 4432829 - 4431963 - | hypothetical protein TERM 5682 4433116 - 4433104 - g 78 -7.7 -4.32034 | GCATGACGACCAAAA CCCTT CCC AAGGG TGTCGCCCTGAAAAA TERM 5683 4433626 - 4433639 + G 71 -2.3 -4.88918 | overlap 4433627 TGGAAAAACCGGTGA GCCTG GGGA CAGGA TTTTATTTCAACTCG TERM 5684 4433841 - 4433825 - g 82 -8 -4.56775 | ACCCTTGCGCAAAAA CCAGGA ATTGA TCCTGG GTGAAATGGTGAGTA CJA_3693 4433022 - 4434242 + | trypsin domain/PDZ domain protein TERM 5685 4434397 - 4434371 - g 82 -7.4 -4.58663 | overlap 4434373 AGCACCTTGGAAAAA TCCCTGTTTGAG AAC CTCAAACAAAAA CCGATCTTTAGCCAA CJA_3694 4434254 - 4434796 + | hypothetical protein TERM 5686 4434879 - 4434852 - T 100 -12.1 -4.56597 | opp_overlap 4434858, overlap 4434858 TCTTGCCGTTAAAAA GTAAAAGGCCG TTGTAC CGGCCTTTCAC TATGACAATTACACC TERM 5687 4434873 - 4434858 - T 84 -7.5 -4.77757 | opp_overlap 4434858, overlap 4434852 CGTTAAAAAGTAAAA GGCCG TTGTAC CGGCC TTTCACTATGACAAT CJA_3695 4437974 - 4434888 - | heavy metal efflux pump, CzcA family TERM 5688 4436540 - 4436525 - G 73 -3.9 -4.80959 | TAAGCGATAACAAAA GCGCC GAGCTG AGCGC AATGACCACCGTAAT TERM 5689 4436601 - 4436573 - G 72 -9.8 -3.37487 | gap 1, overlap 4436571 CCATAGGGTGAAACA TTTTTCCCTCGAC ACCG GT-GAGGGAAAAA ATCGGCAGATACACC CJA_3696 4438996 - 4437986 - | cation efflux system protein TERM 5690 4438385 - 4438411 + g 75 -7.2 -4.32046 | TTGCAGATGGCCATT CCCGTCCAGG GTGATTG TCTGGCCGGG TTTGATTTTTCCAAC TERM 5691 4438773 - 4438738 - G 75 -11.8 -3.01712 | opp_overlap 4438750 CGCGCTTTTGCAATA CGCCTGCCTCTGCCAC AGCG GTGGTCAAGGCAGACG CCTCAGCCACCTCGG CJA_3697 4440252 - 4438993 - | putative cation efflux system protein TERM 5692 4439181 - 4439212 + g 70 -6.7 -4.11216 | gap 3, opp_overlap 4439199 TGTCACGGCTGGATT CCTGCAGC-AGCGGCA AAA TGC-GCTCGC-GCAGG TTTTCCACCTCGGCC TERM 5693 4439326 - 4439372 + g 93 -15.1 -3.01924 | gap 1 ATCCTGCTCCGCCCG TGCCACCTGGATAGCGCCCGCC GCAC GGCGGCCGCTGGCCAGG-GGAA TATTCACCCCGACTA CJA_3698 4440771 - 4440331 - | hypothetical protein CJA_3699 4442065 - 4440818 - | Permease of the major facilitator superfamily TERM 5694 4441113 - 4441102 - G 70 -5.8 -4.28548 | ACCCACCGATTAAAA CAGC GCTG GCTG GCAGGGTTGACGATA TERM 5695 4441211 - 4441181 - G 73 -3.8 -4.83169 | opp_overlap 4441182 4441184, overlap 4441167 4441182 ACCGGCCCATAAAAA CGCCGGCCTGCT CGCCGAT ACCGGGCCGGCT GTTGTGCGGAACAAG arsR 4442493 - 4442158 - | arsenic resistance operon regulator CJA_3701 4442706 - 4444055 + | hypothetical protein CJA_3702 4444040 - 4444411 + | Predicted transcriptional regulator CJA_3703 4444437 - 4444763 + | putative inner membrane lipoprotein TERM 5696 4445190 - 4445219 + G 74 -3.3 -5.00884 | GGTCACCCTGATAGG CGCTGCCGGTATC GACA GTGACAGGCTGCG TTTTTTGCCCGGGGT TERM 5697 4445635 - 4445603 - g 84 -4 -5.21709 | TTGCACAGGAAAAAA CCGCCGAACGCGAG GGATT CACACCTTCAGCAG AGACCATCCAGCATA CJA_3705 4444828 - 4445988 + | transcriptional regulator, AraC family glu16C 4447007 - 4445985 - | beta glucanase, putative, glu16C TERM 5698 4447076 - 4447053 - R 100 -9.6 -5.5112 | gap 1 CTTATCAATAAAAAA GGGCG-GAGCA TCC TGCTCGCACCC GTGAGGAATAACACC glu16G 4448308 - 4447112 - | beta glucanse, putative, glu16G TERM 5699 4448004 - 4448018 + g 81 -10 -3.9461 | ATAATCACATTGCTC TGCCAC TGG GTGGCA TTGTTCTTACCGAAG TERM 5700 4448443 - 4448460 + r 82 -6.9 -4.84359 | opp_overlap 4448444, overlap 4448444 GGCGACCATAAAAAA AGGCTGC CTGG GCAGCCC TTTTTATCAGGATAA TERM 5701 4448444 - 4448459 + r 79 -10.4 -3.50133 | opp_overlap 4448444, overlap 4448443 GCGACCATAAAAAAA GGCTGC CTGG GCAGCC CTTTTTATCAGGATA TERM 5702 4448459 - 4448444 - R 100 -10.4 -5.67063 | opp_overlap 4448443 4448444 GCGACCATAAAAAAA GGCTGC CTGG GCAGCC CTTTTTATCAGGATA CJA_3707 4450539 - 4448485 - | alkaline phosphatase-like protein TERM 5703 4451413 - 4451382 - g 70 -4.2 -4.66609 | opp_overlap 4451400 CAGGCGATGGAAAAA CTTGCCAGGGCCGG TATT CCGGTGCTGGTGAG CGTGGCGCCGGTGAT CJA_3708 4450545 - 4451843 + | radical SAM domain protein protein TERM 5704 4451877 - 4451849 - f 73 -9.8 -3.33696 | opp_overlap 4451852 4451862 TTTTGGTTGAATCAA TCACTATGATTA TTTAT TAATCACAGTGA TTAGGAATTTATATG CJA_3709 4451890 - 4452159 + | hypothetical protein CJA_3710 4452176 - 4452451 + | plasmid stabilization system protein, RelE/ParE family CJA_3711 4453947 - 4452535 - | transcriptional regulator, GntR family TERM 5705 4452767 - 4452746 - G 82 -3 -5.28176 | gap 1, overlap 4452749 TCCACCCACAAAAAA TAAC-CGCC ATGGG GGCGGGTCA CGCGGGTGTTGGCGG TERM 5706 4452763 - 4452749 - G 88 -8.5 -4.73105 | overlap 4452746 ACCCACAAAAAATAA CCGCC ATGGG GGCGG GTCACGCGGGTGTTG TERM 5707 4453784 - 4453757 - G 74 -6.2 -4.52589 | overlap 4453761 TGGGCGCAGACAAAA TAACCCGAGCGC GGCC GCGCCTGGATCA GGCCGCGGCTCTCCA CJA_3712 4455368 - 4453962 - | iron-sulfur cluster-binding protein TERM 5708 4454167 - 4454200 + g 93 -8.8 -4.76123 | overlap 4454168 AGCCTGTCCCGGCTA TCCAGCTGCAAGTG ATAGCG CACGGGCAGCTGGG TTTTGTTGGTAATTT TERM 5709 4454168 - 4454199 + g 74 -10.1 -3.44047 | overlap 4454167 GCCTGTCCCGGCTAT CCAGCTGCAAGTG ATAGCG CACGGGCAGCTGG GTTTTGTTGGTAATT TERM 5710 4454369 - 4454389 + g 76 -8.1 -4.15044 | opp_overlap 4454351 4454349 4454362 4454366, overlap 4454370 CCAGGTAACCCAGCA GGCGCGGGC GCC GCCAGCGCG TTTGTTCACCGGCAA TERM 5711 4454370 - 4454388 + g 75 -11.6 -3.08812 | opp_overlap 4454351 4454349 4454362 4454366, overlap 4454369 CAGGTAACCCAGCAG GCGCGGGC GCC GCCAGCGC GTTTGTTCACCGGCA CJA_3713 4455596 - 4455763 + | hypothetical protein CJA_3714 4455751 - 4457496 + | sensory box protein CJA_3715 4457947 - 4457507 - | Bacterial Transmembrane Pair family TERM 5712 4458379 - 4458349 - g 70 -10.4 -3.16676 | overlap 4458347 4458367 TGCAGCAACTGAATA CCCAGGCGCTGG AATTAAG CCAGGGCCTGGA AACCCGCCTGACGCT TERM 5713 4458824 - 4458860 + G 82 -13 -2.87132 | GGTGCTCGCCGGGCT GGGCTGGGC-CTGGCTGC CGC GC-GCCTGCGTCCAGCCC TATATCAACGGCCAG TERM 5714 4458918 - 4458902 - g 78 -8.7 -4.18018 | GCTGCCCATGGAAAA CTTCACC AAC GGCGAAG AACTGTGGATCGACC CJA_3716 4458099 - 4459037 + | transcriptional regulator, LysR family TERM 5715 4459162 - 4459118 - T 100 -14.3 -5.26875 | opp_overlap 4459118 GTGGCAATCAAAAAA GCCGCTGCGGTTATTCGCC TGAATGT GGCAAACACCCCCAGCGGC TTTTTTATCGACAGA TERM 5716 4459118 - 4459162 + T 100 -9.9 -5.24129 | opp_overlap 4459118 GTGGCAATCAAAAAA GCCGCTGCGGTTATTCGCC TGAATGT GGCAAACACCCCCAGCGGC TTTTTTATCGACAGA dam 4459417 - 4459199 - | adenine-specific DNA methyltransferase CJA_3718 4459500 - 4459790 + | hypothetical protein TERM 5717 4459845 - 4459822 - T 100 -11.1 -5.60993 | GCGCCCATAAAAAAA GGTTGCATC GGTGAG GATGCAACC CAAGAGCCACACATC CJA_3719 4460281 - 4459952 - | hypothetical protein TERM 5718 4460612 - 4460622 + G 71 -3.2 -4.7373 | AAAGTCTGTGCGTAC CCAT CTC GTGG TTTTTCCTCGACTGC mrfJ 4460413 - 4460808 + | MrfJ protein TERM 5719 4461172 - 4461147 - g 71 -3.2 -4.86621 | gap 1, overlap 4461148 4461149 ATTGGCAATGAAAAA TCGGTGCGCGC TGTGG GCGC-CGCCAA TGGCAAAAACCCTAT CJA_3721 4460817 - 4461323 + | methylated-DNA-[protein]-cysteine S-methyltransferase CJA_3722 4463450 - 4461342 - | TonB-dependent ferric achromobactin receptor CJA_3723 4463759 - 4463559 - | hypothetical protein TERM 5720 4463806 - 4463796 - H 72 -8.2 -3.82208 | overlap 4463790 GACCAAACAGCGAAA CCGC ATC GCGG TACAACACAGCGTAG TERM 5721 4463977 - 4463963 - H 86 -9.2 -4.5115 | opp_overlap 4463962 4463969 CATAAAAAGGTAAAA CGCCGC CAT GCAGCG CCTGTTGCTTGAAAA TERM 5722 4464044 - 4464019 - g 75 -5.3 -4.64657 | gap 1 GGAAAGCCCGAAAAA GCCG-CAAGCCG CTA CTGCTGGACGGC GCACGTCAAACCGGT TERM 5723 4464970 - 4464960 - g 71 -3.2 -4.87803 | TACCGGGAAATAAAA CAGC AGG GCTA CGCATACAAAGGCTA CJA_3724 4463970 - 4465286 + | hypothetical protein CJA_3725 4465614 - 4465312 - | Plasmid stabilization system protein CJA_3726 4465946 - 4465602 - | Antitoxin of toxin-antitoxin stability system TERM 5724 4465911 - 4465878 - G 81 -9.7 -3.94634 | opp_overlap 4465886, overlap 4465879 4465886 GAGCATCCTAAATAA GGCGAAAAGTGACAC TATA GTATCACTTTTCACA GAGGTAATAATAGCG TERM 5725 4465910 - 4465879 - G 82 -13.2 -2.96298 | opp_overlap 4465886, overlap 4465878 4465886 AGCATCCTAAATAAG GCGAAAAGTGACAC TATA GTATCACTTTTCAC AGAGGTAATAATAGC TERM 5726 4465903 - 4465886 - G 70 -6.3 -4.2573 | opp_overlap 4465886, overlap 4465879 4465878 TAAATAAGGCGAAAA GTGACAC TATA GTATCAC TTTTCACAGAGGTAA CJA_3727 4466235 - 4466002 - | hypothetical protein TERM 5727 4466949 - 4466965 + r 71 -3.7 -4.84642 | GTTCCTCCCATACCC TTAATGG CCA CCATAAA TTTTCTTCCTTTAAA CJA_3728 4468329 - 4467064 - | hypothetical protein CJA_3729 4470578 - 4468461 - | UvrD/REP helicase CJA_3730 4472817 - 4470565 - | hypothetical protein TERM 5728 4471287 - 4471297 + g 100 -4 -5.64274 | AAACATAATAATTTC TAAG AGT CTTA TTTTTTTCTAGATAG CJA_3731 4473668 - 4472910 - | hypothetical protein TERM 5729 4473282 - 4473292 + g 82 -3.2 -5.28942 | GCGAAAAAACTGTTG TACG CGG CGTG TTTTTGTTTCGCGTA TERM 5730 4473526 - 4473566 + g 100 -19 -3.11634 | AAGTTACAGGCTTTC ATCGCCACGGCCGATGGC GTGCG GCCAATGGCCGTGGCGAG TTGGATAATATCCGG CJA_3732 4474250 - 4474113 - | hypothetical protein CJA_3733 4473975 - 4474697 + | hypothetical protein CJA_3734 4475585 - 4474725 - | ISCja1, transposase orfB CJA_3735 4475881 - 4475582 - | ISCja1, transposase orfA TERM 5731 4476452 - 4476441 - g 100 -5.8 -5.48825 | overlap 4476442 CATCACCTAAAAAAA CGGA GCTT TCCG CACCGGAGTCCTGGC CJA_3736 4476026 - 4476883 + | hypothetical protein CJA_3737 4477896 - 4476979 - | putative pyridine nucleotide-disulphide oxidoreductase TERM 5732 4477062 - 4477109 + g 85 -8.2 -4.50761 | gap 1, opp_overlap 4477051 4477095 CAAAGGTCACACTGC CCGCTG-GCCGGGCCAGGTCGCC GCA GGCGAATACGCCGGGCACGGTGG TTTGTTTGAATTCAT CJA_3738 4478402 - 4477902 - | Transcriptional regulator family TERM 5733 4478054 - 4478070 + g 76 -12.3 -2.63073 | overlap 4478053 4478063 AGTTGAGTAGCAGGG CTTCGGC CTC GCCGAAG GTGTTGTTGAGCGCG TERM 5734 4478395 - 4478448 + g 80 -11.3 -3.37915 | gap 1, overlap 4478393 4478396 GAGAGTTTGGAATCG CGCT-TCATAGCCTTTCACGTAATTT AAT AAGTTACGTGAAAGGCTATGCCAGAA TATTCGTTTATGCAA TERM 5735 4478396 - 4478447 + g 90 -14.8 -2.62267 | gap 1, overlap 4478395 4478393 AGAGTTTGGAATCGC GCT-TCATAGCCTTTCACGTAATTT AAT AAGTTACGTGAAAGGCTATGCCAGA ATATTCGTTTATGCA CJA_3739 4478509 - 4478853 + | Transcriptional regulator TERM 5736 4479350 - 4479336 - g 80 -11.4 -3.31144 | GCCGCACTGGCACAA GCCGGA GGT TCCGGC GGCGCGCGTCCCAAG TERM 5737 4479977 - 4479958 - g 72 -4.9 -4.62872 | overlap 4479949 4479948 AGCAATTGGCAAAAA CCGCTGG CTTTTC CCAGTGG AGCGATGCAAAAACC CJA_3740 4478850 - 4480133 + | hypothetical protein CJA_3741 4480683 - 4480147 - | hypothetical protein TERM 5738 4480194 - 4480214 + g 78 -8.2 -4.27316 | opp_overlap 4480204 CCAATTGGGCATGGA CCCGCCAG AATCC CTGGGGGG TTTTGCCTTCCAGGC CJA_3742 4481090 - 4480746 - | transcriptional regulatory protein TERM 5739 4481218 - 4481228 + H 71 -6.8 -4.07687 | opp_overlap 4481210 CGCAAAAGCACACCG GGCT GGT AGCC TTTTGGCCGCAGGGT TERM 5740 4481444 - 4481425 - g 78 -10.8 -3.53811 | opp_overlap 4481418 TTTATGTGCCGCAAA CGGATAAG GCCT CTTATCCG GTGGTAGTGATTTAC TERM 5741 4481832 - 4481809 - g 82 -7.4 -4.56597 | gap 1 TGCCTGCCGGAAAAA CCG-CTGAGCA GGT CGCCCAGGCGG ACGGGTTGAAGGTGC lipP 4481283 - 4482290 + | lipase CJA_3744 4483222 - 4482320 - | transcriptional regulator TERM 5742 4483137 - 4483160 + g 70 -10.3 -3.15544 | gap 1 GACACGCTGGCCTTG GGCAGGCCGA GACTG TCGGCC-GCC TTGGTAAAACTGGCG TERM 5743 4483307 - 4483267 - H 78 -6 -4.87291 | overlap 4483268 CAGTCTAATCAAAAA TGGGCGGTTTATCGCCCG GTTAA CGGGCAATAGACTGGCCT CACAGATTTTCACCA TERM 5744 4483306 - 4483268 - H 75 -9.5 -3.51651 | overlap 4483267 AGTCTAATCAAAAAT GGGCGGTTTATCGCCCG GTTAA CGGGCAATAGACTGGCC TCACAGATTTTCACC CJA_3745 4483340 - 4484095 + | reductase CJA_3746 4484944 - 4484123 - | transcriptional regulator, LuxR family TERM 5745 4484186 - 4484199 + g 83 -5.9 -5.00616 | overlap 4484161 TACCAATTCCGCCTG CCGGT GTGT GCCGG TTTTTTCAAAGACGC TERM 5746 4485368 - 4485389 + G 77 -10.1 -3.57792 | AACTGACACCCTTTT TAGCGCGCT TTGC AGCGCGCGA TTTCAGCCTGGATCA CJA_3747 4485142 - 4486074 + | Chitosanase Csn46F CJA_3748 4486055 - 4486258 + | hypothetical protein TERM 5747 4486496 - 4486513 + F 70 -4.9 -4.42464 | AAATTTACACGACAG GATGTAA TTTC TTACGTC TTTATTTAAAAAGTT TERM 5748 4487343 - 4487331 - g 74 -3.3 -5.00616 | TCCGGCTTTAAAAAA CCTTG CAC CATGG CAGGCATCGCTGATT CJA_3749 4486872 - 4487945 + | hypothetical protein TERM 5749 4487959 - 4487998 + F 72 -9.2 -3.62418 | opp_overlap 4487995, overlap 4487983 4487993 4487995 AAGGGGTTATCGCCA CCTGACACCTATGGCCGA TGAC TCGGCCATAACCGACAGG TTTGCCCTGCCTTGT TERM 5750 4488121 - 4488133 + G 72 -5.5 -4.57837 | ACGGCAGATTGTGCG CGCAC AGG GTGTG TTTTTGGAAGACTCT TERM 5751 4488714 - 4488732 + G 75 -6.7 -4.30995 | opp_overlap 4488714, overlap 4488711 TGGATGAAATCCAAA CCGGTAT CGGAC GTACCGG TTATTTTCTGGCAGC CJA_3750 4488044 - 4490674 + | aminotransferase TERM 5752 4490726 - 4490690 - f 86 -12.9 -3.33696 | opp_overlap 4490694, overlap 4490691 CGGCCTTTCAATCAA GCCACCCCGGCCCGG CGATTTT CCGGGGCAGGGTGGT GAACCTAACCTTGAC TERM 5753 4490725 - 4490691 - f 95 -16.4 -2.60075 | opp_overlap 4490694, overlap 4490690 GGCCTTTCAATCAAG CCACCCCGGCCCGG CGATTTT CCGGGGCAGGGTGG TGAACCTAACCTTGA CJA_3751 4490761 - 4492275 + | hypothetical protein CJA_3752 4492314 - 4493678 + | FAD binding domain protein TERM 5754 4493910 - 4493900 - g 75 -6.8 -4.4078 | CTGTCCGAATTAAAA GTGG ACT CCAC GCCGTATTTTATGGA TERM 5755 4494796 - 4494784 - g 74 -3.3 -4.93877 | opp_overlap 4494795, overlap 4494785 CGGCATCAAACAAAA TGTGG TCA CCACC GCGCTGCCGGTTTTC TERM 5756 4495209 - 4495190 - g 82 -2.8 -5.18726 | gap 1, opp_overlap 4495181 4495190, overlap 4495192 TTTTCACAACAAAAA CACAGCCTG CTG CTGG-TGTG TGTGTTGGTGTTTTC CJA_3753 4493750 - 4496323 + | putative transporter TERM 5757 4496527 - 4496513 - g 85 -2.8 -5.36441 | CCGGTACAGAAAAAA CTGC TTCGCTT GCAG GCAGAGGGCCCTTGC TERM 5758 4497437 - 4497450 + G 76 -3.8 -5.00616 | AACATCATTCAATTG GCCA TGGCAC TGGC TTTTTTCCGCACCAA TERM 5759 4497679 - 4497662 - g 88 -2.6 -5.47218 | opp_overlap 4497667, overlap 4497663 CGCCAGTCAAAAAAA GGCGAG GGCGCG CTCGCA CATTTACTGGCATTG CJA_3754 4496369 - 4498162 + | Choline/Carnitine o-acyltransferase superfamily CJA_3755 4498159 - 4499502 + | probable FMN oxidoreductase TERM 5760 4499990 - 4499980 - g 90 -6.8 -5.06816 | overlap 4499981 AGTGCCGAACAAAAA CGCA CCC TGCG CCTTGCTGCACAGCT CJA_3756 4499503 - 4500819 + | hypothetical protein CJA_3757 4500823 - 4501647 + | short-chain dehydrogenase CJA_3758 4501658 - 4502950 + | hypothetical protein TERM 5761 4503233 - 4503223 - g 75 -6.8 -4.35518 | AACTGGATATCAAAA CCCT TGA AGGG GTTGAGGAGGGCGAT TERM 5762 4503341 - 4503319 - g 100 -4.8 -5.58454 | CCCACACCAAAAAAA CAACCAACGA CGA TCAATGGCTG TATTTGCCGTCTATC TERM 5763 4503411 - 4503390 - g 80 -5.7 -4.91852 | opp_overlap 4503389 TCGAGCAAAAATAAA CGCAGCCCA TTTT TTGGCAGCG AATTTGCATTCGAGG CJA_3759 4502973 - 4503812 + | hypothetical protein CJA_3760 4504617 - 4503820 - | putative arylamine N-acetyltransferase CJA_3761 4505622 - 4504693 - | hypothetical protein TERM 5764 4504980 - 4504996 + g 70 -6.5 -4.18197 | ATTCCACCAGGACTT TTTGGCG ATC CGCCGGA TTTTCACTGCGCAGT TERM 5765 4505219 - 4505235 + g 70 -4.4 -4.57569 | gap 1, overlap 4505219 4505220 CTACCGGGATTTTGC G-CCAGG AACT CCTGGAC TTTTTCAACAAATGA TERM 5766 4505495 - 4505507 + g 82 -3.3 -5.1861 | TCGGCAACCTTGTGT TCCAG GGA CAGGA TTTTTTGCTGGTGCG TERM 5767 4505719 - 4505701 - R 100 -12.4 -5.28176 | opp_overlap 4505701 GGTAGCGATAAAAAA GGGGCAGA TGA TCCGCCCC TTTTTTGTTACAGCG TERM 5768 4505701 - 4505719 + r 100 -10.2 -5.4505 | opp_overlap 4505701 GGTAGCGATAAAAAA GGGGCAGA TGA TCCGCCCC TTTTTTGTTACAGCG xyn11B 4506835 - 4505762 - | endo-1,4-beta-xylanase, xyn11B TERM 5769 4506791 - 4506809 + g 100 -6 -5.63645 | opp_overlap 4506806, overlap 4506806 CAAGGCCGCTGCCCA TGCGATTG AAA CAATCACA TTTTTTGTGTTTTGA xyn11A 4509177 - 4507192 - | endo-1,4-beta-xylanase, esterase, xyn11A TERM 5770 4507658 - 4507646 - G 76 -9.1 -3.727 | opp_overlap 4507638 GTCACCACACGCAAA CCCAG CGC CTGGG CTGCCTGTTGGATCG TERM 5771 4509427 - 4509449 + G 100 -4 -5.61824 | overlap 4509429 ACGGAAAAACGTTTA TTGGCCTGTG CAT TACTGGCCTA TTTTTTTAAATTTTC TERM 5772 4509429 - 4509447 + G 75 -6.6 -4.41528 | overlap 4509427 GGAAAAACGTTTATT GGCCTGTG CAT TACTGGCC TATTTTTTTAAATTT CJA_3765 4509382 - 4509516 + | hypothetical protein CJA_3764 4509583 - 4509470 - | hypothetical protein CJA_3766 4510616 - 4509645 - | integral membrane protein CJA_3767 4511600 - 4510665 - | Periplasmic binding protein cobC 4512720 - 4511632 - | cobalamin biosynthetic protein TERM 5773 4512005 - 4512034 + g 100 -15.2 -3.65991 | opp_overlap 4511997 4512001, overlap 4511997 GTACCAATCCAGAGG GCTGGATGATTG ATCACC CAATCATCCAGC TTATCTTCCAGGGCT cobD 4513676 - 4512717 - | cobalamin biosynthesis protein CobD TERM 5774 4513631 - 4513612 - G 73 -9.2 -3.6608 | ACCAGGGGATGGAAA CGCCTGGG TTCA CCCAGGAG GCGATCTGCCAATAC cobP 4514216 - 4513683 - | cobinamide kinase CJA_3771 4515050 - 4514250 - | heme/hemin ABC transporter, ATP-binding protein CJA_3772 4516075 - 4515047 - | probable permease of ABC transporter TERM 5775 4515104 - 4515093 - G 77 -5.8 -4.64952 | overlap 4515095 AAGTAGATAAAGAAA GGTG CACC CACC AGCGCAGTGACCAGG cobQ 4517592 - 4516072 - | cobyric acid synthase CobQ cobO 4518242 - 4517595 - | cob(I)alamin adenosyltransferase TERM 5776 4518291 - 4518260 - R 100 -9.3 -5.4477 | overlap 4518264 AAACCCTTAAAAAAA TAAAGCGCGCCCC GGGTAT GGGGCGCGCCTGC CGGCAGGTTAACCTG TERM 5777 4518287 - 4518264 - R 100 -16.7 -5.20328 | overlap 4518260 CCTTAAAAAAATAAA GCGCGCCCC GGGTAT GGGGCGCGC CTGCCGGCAGGTTAA TERM 5778 4518329 - 4518317 - R 73 -7.7 -4.07687 | ACCTGTGCCTTAAAA GGTGA TTT TCACC CCGGCATAGGCCGCT CJA_3775 4520155 - 4518311 - | putative TonB-dependent receptor TERM 5779 4518594 - 4518560 - G 81 -10.7 -3.64703 | gap 1 CGCCGCGTAGGTAAA GCCC-AGGTTGGCCAG TTGC CTGGGCACCCTTGGGC GCGCTGAACCTGTCG TERM 5780 4519081 - 4519067 - G 71 -2.1 -5.00616 | overlap 4519069 GCCGGCGGTAAAAAA TACGC GATCG GCATA GCGGCCCTGGTATTC TERM 5781 4519635 - 4519656 + g 84 -7.9 -4.6759 | TGGGAGTTGTAACGC CCGGCCTCG CCGC TGAGGACGG TTTTATTGCCCTGTT CJA_3776 4520240 - 4520530 + | hypothetical protein CJA_3777 4521667 - 4520576 - | hypothetical protein CJA_3778 4523519 - 4521669 - | hypothetical protein TERM 5782 4523587 - 4523557 - R 100 -13.4 -5.72622 | opp_overlap 4523555 4523550 GCGATAAAGAAAAAA CGGATTCCCGTAGT TGT ATTACAGGAATCCG TCATGGCCTATTTGG CJA_3779 4525115 - 4523595 - | putative lipoprotein TERM 5783 4524661 - 4524679 + g 74 -3 -5.02074 | opp_overlap 4524628, overlap 4524663 4524664 GCCTGCATAACGCGC AAGCCCAG TGT CTGGGATA TTTTTTGACAGCTGG CJA_3780 4526861 - 4525119 - | hypothetical protein TERM 5784 4525224 - 4525206 - G 73 -9.5 -3.59262 | CGTCACACCTTTAAA GCCGGGA CTTAC CCCCGGC GCGACACTGATGCTG TERM 5785 4526932 - 4526916 - H 82 -7.9 -4.55689 | ATGATCCATAGAAAA GCGCAGC CAA GATGCGC AATCGCTGTATTAAC CJA_3781 4527268 - 4527582 + | IS66 family element, Orf1 protein TERM 5786 4527610 - 4527628 + G 77 -8.8 -4.09864 | overlap 4527625 ATGTGCCGGTATACG TACACCGG CAA CCGGTGGA TTTTCGCAAATCCAT CJA_3782 4527579 - 4527929 + | IS66 family element, Orf2 protein TERM 5787 4528979 - 4528969 - g 95 -6.8 -5.40474 | opp_overlap 4528969 4528968 ACCTTGTGAAAAAAA GGGT ATT ACCC ATTTAGCCTGTTGGG TERM 5788 4529514 - 4529496 - g 72 -10.3 -3.36968 | opp_overlap 4529496 4529495 TACCCAATGCGACAA GCCTCGA ACAGA TCGAGGC ATTATTACCGTGGAA CJA_3783 4527968 - 4529551 + | IS66 family element, transposase TERM 5789 4529685 - 4529700 + G 74 -2.6 -5.13137 | CACAGGAATAAAAAT GAAGAA GCTA TTTTTC TTTTTGCTTTGTTTA man5E 4529683 - 4531152 + | endo-beta-mannanase, putative, man5E CJA_3785 4532435 - 4531575 - | ISCja1, transposase orfB CJA_3786 4532731 - 4532432 - | ISCja1, transposase orfA TERM 5790 4533166 - 4533184 + r 76 -7.4 -4.35926 | opp_overlap 4533166 CTTGAGGACTTGAAA GCCCAG CGTAAAT CTGGGC TTTTCCGTTTCAGCT TERM 5791 4533563 - 4533578 + r 89 -9 -4.70319 | opp_overlap 4533562 4533563 AGCCTATTAAAGAAG GTCGAC ATTT GTCGAC TTTTCATTTTGGTGG CJA_3787 4534192 - 4533650 - | putative hypoxanthine phosphoribosyltransferase TERM 5792 4533908 - 4533898 - G 70 -6.8 -4.1157 | CATCAACAATAAGAA CGGA TTT TCCG TTGAGAGATTCATGA CJA_3788 4535023 - 4534535 - | hypothetical protein TERM 5793 4534888 - 4534874 - G 70 -4.2 -4.65895 | opp_overlap 4534875, overlap 4534875 CGGGTTATGCAAAAA TTGCAG ATA CTGCAT TTTTATAAACCATCT TERM 5794 4534875 - 4534887 + g 90 -7.7 -4.83615 | opp_overlap 4534874 4534875 GGGTTATGCAAAAAT TGCAG ATA CTGCA TTTTTATAAACCATC CJA_3789 4536301 - 4535045 - | putative phosphoribosylglycinamide synthetase CJA_3790 4537067 - 4536288 - | putative methylthioadenosine/S-adenosyl homocysteine nucleosidase TERM 5795 4536736 - 4536723 - G 75 -5.3 -4.68593 | opp_overlap 4536723 4536731 TCTATCATGGAAAAA GCAAT GCTC ATTGC TAATGTAGGTTTTTC CJA_3791 4537810 - 4537073 - | hypothetical protein TERM 5796 4537375 - 4537349 - G 72 -4.4 -4.63526 | opp_overlap 4537349, overlap 4537351 ATAAGTAGAAATAAA GATATCCGCATT TAA ATTGCAGATAAC GTTTTTTATTCTTTT CJA_3792 4538907 - 4538047 - | ISCja1, transposase orfB CJA_3793 4539203 - 4538904 - | ISCja1, transposase orfA TERM 5797 4539395 - 4539364 - R 74 -11 -2.89475 | overlap 4539359 4539366 GAGTGATATACCAGA GAGCTGATTCCAAA TTTT CTTGTAATCAGCTC CACTCATGCGAGAAG CJA_3794 4542579 - 4539346 - | DEAD/DEAH box helicase TERM 5798 4539734 - 4539744 + g 72 -5.4 -4.58236 | opp_overlap 4539734 AAATCACGATACAAA GCTT TAC AAGC TTTTGATATTTTATC TERM 5799 4540355 - 4540341 - G 72 -4.3 -4.63218 | GTTCTTCCAACAAAA TTTCC AACCG GGAAA TTAAAGAGCCCGTCG TERM 5800 4540528 - 4540514 - G 73 -4.2 -4.86731 | TTGCCGTAAATAAAA TCTGTC GAT GCCAGA AATACCGAAGAAACA TERM 5801 4540560 - 4540542 - G 70 -6 -4.27007 | GAAATACCGAAGAAA CAGGGA AATTTAA TCCCTG TGCAATTGTAGTTGT CJA_3795 4543388 - 4542576 - | hypothetical protein CJA_3796 4543710 - 4543405 - | hypothetical protein TERM 5802 4543514 - 4543539 + g 86 -4.2 -5.35815 | gap 1, opp_overlap 4543504 4543519, overlap 4543519 GCAAATTCGATCCGC GAAAT-GACTT GCTGA AAGTCGATTTC TTTTTCTTTCATCTC TERM 5803 4543852 - 4543840 - R 81 -4.9 -5.2696 | TCAAAACTGAAAAAA TTGAA ATA TTCAA CCGTAAGCTTTATAT tnsE 4545595 - 4543994 - | Tn7-Cj, transposition protein TnsE TERM 5804 4544453 - 4544438 - GR 87 -4.6 -5.29385 | overlap 4544450 AATGTAATTAAAAAA GCCAAC ATCA GATGGC GAACTATCGTCCAGG tnsD 4547123 - 4545561 - | Tn7-Cj, transposition protein TnsD tnsC 4548743 - 4547124 - | Tn7-Cj, transposition protein TnsC TERM 5805 4547592 - 4547602 + g 70 -5.4 -4.41206 | ATTTCCACTGCGAAG TGCT TGA AGCA TTTTGTGGACTGGTT tnsB 4550844 - 4548733 - | Tn7-Cj, transposase protein TnsB TERM 5806 4548944 - 4548960 + g 77 -2.9 -5.04249 | GTTCGTTGAGATTTA GGCAGGT GCG ACATGTC TTTGTTTTTTGAACG TERM 5807 4550247 - 4550233 - G 71 -2 -4.90917 | AAACCCAAGCAAAAA CAACGC CCT GCGGTA TACGAACCGAACCGT TERM 5808 4550360 - 4550373 + g 84 -3.7 -5.28778 | CCTAGCGCTACTTTG CGAGG ACGC CCACG TTTTTTATCGGTGAT tnsA 4551685 - 4550828 - | Tn7-Cj, transposase protein TnsA TERM 5809 4551735 - 4551693 - R 100 -8.5 -5.21709 | opp_overlap 4551693 TTGGACATTAAAAAA CCCAGTAGCAACCTATTTT GATCA AATATAGGCCACTGCTGGG TTAGTATCACTAATT TERM 5810 4551803 - 4551828 + r 77 -10.5 -3.3482 | opp_overlap 4551803 4551808, overlap 4551808 ATTATTTTAAAAAGA CAAAACCGGGA TTTC TCCCGGTTTTC TTCATTCGACCGTTA TERM 5811 4551828 - 4551803 - R 84 -10.5 -3.93148 | opp_overlap 4551803 4551808, overlap 4551808 ATTATTTTAAAAAGA CAAAACCGGGA TTTC TCCCGGTTTTC TTCATTCGACCGTTA TERM 5812 4551823 - 4551808 - R 100 -10.4 -4.98672 | opp_overlap 4551803 4551808, overlap 4551803 TTTAAAAAGACAAAA CCGGGA TTTC TCCCGG TTTTCTTCATTCGAC TERM 5813 4551808 - 4551823 + r 100 -10.4 -4.78572 | opp_overlap 4551808 4551803, overlap 4551803 TTTAAAAAGACAAAA CCGGGA TTTC TCCCGG TTTTCTTCATTCGAC glmS 4553662 - 4551830 - | glucosamine--fructose-6-phosphate aminotransferase, isomerizing TERM 5814 4552237 - 4552264 + g 81 -9.8 -3.86015 | CAATCGGGTACTGGT CGCCGCGCCC CAAAAACA GGGCGTGGTG TTTATCGGCAAACTC TERM 5815 4552320 - 4552340 + g 76 -3.9 -5.00616 | overlap 4552321 GCTAACGCCAGGGAT TCTTCCAGT TTT GCAGGAAGG TTTTTTAGCGCGCCA TERM 5816 4552756 - 4552777 + g 71 -2.9 -4.86862 | overlap 4552750 AATGGTAGCTGGTGC CACAGGCAA CGAT TTGCACGTG TTTTACTTTTTTGAA srlR 4554472 - 4553705 - | Putative transcriptional regulator, DeoR family TERM 5817 4554314 - 4554297 - G 74 -10.5 -3.18366 | overlap 4554295 4554293 TGGGGAACCAATACA GCACCGC CATA GCGGCGC AGGAGCAGGCCATTG cel9C 4556810 - 4554546 - | cellulase, putative, cel9C TERM 5818 4554791 - 4554781 - G 72 -8.2 -3.84246 | CCGCCAACCAGGAAA CCGG GTG CCGG ACCGTAAACGGACTG TERM 5819 4556934 - 4556907 - R 93 -15.8 -3.05384 | opp_overlap 4556913, overlap 4556913 CTTTGGCCCATCCAA TAAAAACGGAGC CGAA GCTCCGTTTTTA CCAGCACTAGAGCTT TERM 5820 4556928 - 4556913 - R 100 -10.4 -5.10461 | opp_overlap 4556913, overlap 4556907 CCCATCCAATAAAAA CGGAGC CGAA GCTCCG TTTTTACCAGCACTA TERM 5821 4556913 - 4556928 + r 93 -10.4 -4.57073 | opp_overlap 4556913 4556907 CCCATCCAATAAAAA CGGAGC CGAA GCTCCG TTTTTACCAGCACTA TERM 5822 4556950 - 4556962 + r 70 -4.7 -4.46581 | CCAGCACTAGAGCTT GCGCC CCA GTCGC TTTTCTACCATTTTC CJA_3805 4557399 - 4556941 - | Helix-turn-helix domain protein glmU 4558887 - 4557526 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 5823 4558314 - 4558324 + g 74 -8.2 -3.9461 | CGGTAAGGTAATACT CGCC CTG GGCG TTGTTATTGCCGAGC CJA_3807 4559021 - 4559467 + | SEC-C motif domain protein TERM 5824 4559516 - 4559497 - T 100 -15 -5.252 | opp_overlap 4559497 TATGTTGATAAAAAA CGGGCCTC AGTT GAGGCCCG TTTTTTATTGAAATC TERM 5825 4559497 - 4559516 + T 100 -15 -5.46657 | opp_overlap 4559497 TATGTTGATAAAAAA CGGGCCTC AGTT GAGGCCCG TTTTTTATTGAAATC atpC 4559966 - 4559541 - | ATP synthase F1, epsilon subunit TERM 5826 4560024 - 4560000 - R 86 -11.4 -3.71649 | opp_overlap 4560000 4559999, overlap 4560001 TGGGTAAACGGCAAA CCAGCCCCGC TTGGC ACGGGGCTGA GGTTATTACTTGAGT TERM 5827 4560023 - 4560001 - R 79 -12.7 -2.82668 | opp_overlap 4560000 4559999, overlap 4560000 GGGTAAACGGCAAAC CAGCCCCGC TTGGC ACGGGGCTG AGGTTATTACTTGAG atpD 4561409 - 4560030 - | ATP synthase F1, beta subunit TERM 5828 4560128 - 4560087 - G 77 -10.4 -3.61902 | gap 2, opp_overlap 4560087 GCCCACCATATAGAA GGCTTGTTCAGGCAGGTGAT CGTA ATCACCGGC-T-AACAAGCC TTTGAAACCACGAAT TERM 5829 4560087 - 4560128 + g 74 -10.4 -3.53091 | gap 2, opp_overlap 4560087 GCCCACCATATAGAA GGCTTGTTCAGGCAGGTGAT CGTA ATCACCGGC-T-AACAAGCC TTTGAAACCACGAAT TERM 5830 4560722 - 4560704 - G 72 -7.4 -3.87112 | opp_overlap 4560703 4560714 CAACGAACAACAGAA CGTCACGA CCT TCGTCACG GAATTTTTCCGCCAT atpG 4562393 - 4561530 - | ATP synthase F1, gamma subunit TERM 5831 4561671 - 4561692 + g 100 -17.3 -4.07687 | opp_overlap 4561669, overlap 4561690 CATCGCGATCATACG CGCGGCCTG TTCA CAGGCCGCG TTTTCGACAACCGCT TERM 5832 4562302 - 4562335 + g 82 -2.6 -5.43487 | gap 1 TGTGCACGACGCATC TTACTGGCGGCAA CCATTTCCA TTG-CGCTAGTAA TTTTTTGTGTGCTTT TERM 5833 4562438 - 4562422 - R 86 -13.7 -3.21354 | TGAGAGAGTGATGAA GCTGCGC GTT GCGCAGC TTCCCATTACCAGGT atpA 4563989 - 4562445 - | ATP synthase F1, alpha subunit atpH 4564550 - 4564014 - | ATP synthase F1, delta subunit atpF 4565032 - 4564562 - | ATP synthase F0, B subunit atpE 4565326 - 4565087 - | ATP synthase F0, C subunit atpB 4566276 - 4565371 - | ATP synthase F0, A subunit CJA_3816 4566747 - 4566316 - | hypothetical protein TERM 5834 4566551 - 4566529 - G 70 -4.9 -4.52589 | gap 2 CTGTCCCAGATAAAA CGCCAGCAACA TTT TGT-GC-GGCG GCTGCCCTAACGCCG TERM 5835 4566954 - 4566942 - R 79 -2.7 -5.28176 | TTTACGCACAAAAAA TTTCC GGG AGAAA TCTTTGACGCCGGAA CJA_3817 4567959 - 4567048 - | hypothetical protein TERM 5836 4567994 - 4568010 + r 76 -9.4 -3.82665 | opp_overlap 4568006, overlap 4568006 GTTTAGTGAGTCGCG GCCGCT TCAAC AGCGGC TTTGCTGCTGTGCTC soj 4568784 - 4567981 - | chromosome partitioning protein Soj TERM 5837 4568566 - 4568535 - G 87 -13.8 -3.01924 | opp_overlap 4568526 4568525, overlap 4568560 CATTGGCGGGCAATA CCTGGTATTTACCG CTGT CGGAAAACACCAGG CAATCGCCGATGGCT TERM 5838 4568731 - 4568751 + g 81 -6.1 -4.86621 | overlap 4568725 AAGATTGACGCAGGT GGTGGTTTT GCC AACACCGCC TTTTTGATTGGCAAT gidB 4569489 - 4568830 - | methyltransferase GidB gidA 4571417 - 4569501 - | glucose-inhibited division protein A TERM 5839 4570713 - 4570766 + g 77 -6 -4.62783 | gap 3, opp_overlap 4570742, overlap 4570715 4570744 AATTTGCGGCGGCTG CA-TGGCGCGGT-TGCCGCGCACCG ACATTAC CGG-GCGCGGCTCGTCGCCCCATTG TTTTTCCAATAGGTC TERM 5840 4570715 - 4570763 + g 81 -8.8 -4.42748 | opp_overlap 4570742, overlap 4570713 4570744 TTTGCGGCGGCTGCA TGGCGCGGT-TGCCGCGCACCG ACATTAC CGG-GCGCGGCTCGTCGCCCCA TTGTTTTTCCAATAG CJA_3821 4572128 - 4571901 - | hypothetical protein trmE 4573458 - 4572091 - | tRNA modification GTPase TrmE TERM 5841 4572817 - 4572840 + gr 71 -10.2 -2.60615 | opp_overlap 4572804 4572801 4572815, overlap 4572816 GACGCGCATACCATC GCGCACCAGG GCGC CCTGGCGTGC CTCTTTAAAGACGCT TERM 5842 4573078 - 4573098 + gr 100 -13.3 -4.05446 | CAGGTCGGCAATGGC CTCGGCCTG GGC CAGGTCGAG TTTATCGTTAAGGAA TERM 5843 4573275 - 4573261 - GR 90 -11.4 -3.90744 | overlap 4573264 GGGGTTGGGAAAGAA CAGGGC TAT GCCCTG GTCGAGGGTGTCGCC TERM 5844 4573447 - 4573395 - GR 100 -17.8 -3.41125 | gap 1, opp_overlap 4573397, overlap 4573388 CGGAGATACGGACAA TACCGACACCACCGCGGCCGGTGGC AGTG GCGAT-GGCGGCGATGGTGTCGGTA TTGGGGTTCATCAGG TERM 5845 4573397 - 4573445 + gr 100 -17.3 -3.10464 | opp_overlap 4573388 4573395 GAGATACGGACAATA CCGACACCACCGCGGCCGGTGGC AGT GGCGATGGCGGCGATGGTGTCGG TATTGGGGTTCATCA CJA_3823 4575116 - 4573458 - | inner membrane protein, 60 kDa CJA_3824 4575378 - 4575118 - | conserved hypothetical protein TIGR00278 TERM 5846 4575197 - 4575210 + g 75 -6.7 -4.36914 | overlap 4575188 TCGATTCCCCCCGGG TGCCA GGGG TGGCA TTTTATAAGGCGACG rnpA 4575793 - 4575386 - | ribonuclease P protein component rpmH 4575952 - 4575815 - | ribosomal protein L34