TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.582298 %AT, 903089 nt, 7578 terms. Intergenic: 0.615992 %AT, H2T: 108758 nt, 861 terms; T2T: 29911 nt, 426 terms; H2H: 45324 nt, 719 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|166154848|ref|NC_010280.1| Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome (length 1038869) hemB 1 - 1017 + | delta-aminolevulinic acid dehydratase TERM 1 1063 - 1087 + T 95 -12.3 -3.92542 | opp_overlap 1062, overlap 1047 AGGAGGTTACCACAT TCTCTTTTGCG TAG CGTAAAAGAGA TTCTTTGACGATAGA nqrA 2440 - 1043 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 2 2013 - 1999 - G 73 -2.8 -5.13741 | opp_overlap 2001, overlap 2001 CTAAGTTAATAAAAA CATCTC GAG GAGATT GTGTTGGAAGAGCTG TERM 3 2366 - 2354 - G 71 -9.1 -3.27676 | overlap 2352 2350 ATCCACGGAAACATA GGTGG GGT CCACC TTACCGCAAAAACCC CTLon_0003 2896 - 2462 - | hypothetical protein TERM 4 2546 - 2566 + g 80 -9.1 -4.00756 | AGATTTGTGGGATGA GTGACCAAT ATC ATTGGTTAC TTCTTTGATAAGCTC TERM 5 2733 - 2745 + g 76 -2.7 -5.28755 | TCCTGCGATCTTTTG TCTAA TTC TTGGA TTTTTTCCTGTGTTT TERM 6 2857 - 2871 + g 82 -5.8 -5.00884 | TAGAGAGAATTTGTT TTATAG AAT CTATAA TTTTTTGAGCGGAAT TERM 7 2913 - 2930 + H 84 -4.3 -5.54403 | ACAAAAATCTCGATG TTTTATT TAAT AATAAAA TTTTTCTTGTTTTTT TERM 8 3816 - 3840 + G 75 -2.1 -5.3689 | overlap 3834 TGCGTCTTCTAAAGA TCCTTATGTAT TCG ATCCGAAAGGA TTTTCTTTTGTTTCT TERM 9 3834 - 3845 + G 71 -3 -5.01553 | overlap 3816 TTATGTATTCGATCC GAAA GGAT TTTC TTTTGTTTCTCAATT TERM 10 4332 - 4345 + G 79 -3.1 -5.39681 | overlap 4323 GATTGAGCAGCCTTT GCTTT ATCC AGAGC TTTTTGTTTGGTTAT TERM 11 4774 - 4744 - g 74 -4.1 -4.91852 | CGTATGAAAAACAAA CTACAATCTCT GGTAGGGAA AGAGATGGTAG AGAATGCTAAGGAAA TERM 12 5057 - 5040 - g 70 -5.7 -4.2679 | TAATCCGGATGAAAA GATTTTA TCAC TAAAATC TAAACTGGCCCAAGA greA 3010 - 5157 + | transcript cleavage factor/unknown domain fusion protein aspC 5345 - 6547 + | aromatic amino acid aminotransferase TERM 13 6681 - 6699 + G 84 -11 -3.61715 | CTTCCATTTCGGCAA GGGTCTGA TTC TCAGGCCC TTGTTGAAGAAACTC CTLon_0006 6522 - 7532 + | exported protein recB 10628 - 7548 - | exodeoxyribonuclease V beta chain TERM 14 9493 - 9510 + g 74 -9.9 -3.10464 | overlap 9495 TTAGAAAAGATCTGC CACTGAC GTTT GTCAGTG TCTTGGAATTCATCG TERM 15 10317 - 10331 + g 73 -3.6 -4.99043 | ATTACGGATCTTCAT GTAAAG CTG TTTTAC TTTTGTTTCTGAGGA TERM 16 10591 - 10581 - G 74 -4 -5.06816 | AGCTTCTAAGAAAAA TTTC CCA GAAA CAGAAGCTGTTGGTG recC 13650 - 10630 - | exodeoxyribonuclease V gamma chain TERM 17 12392 - 12407 + g 70 -2.5 -4.96762 | TAGTGCGTAAGTTTA TGGGT AAGGAA GCCCA TTTTTGTAGTCTCTA TERM 18 13740 - 13756 + G 80 -3.7 -5.37865 | TATAAATGACAATCT CTATAAG TTT CTTTTAG TTTTTTCCTTGTTAG CTLon_0009 13663 - 15342 + | putative membrane efflux protein CTLon_0010 16177 - 15362 - | hypothetical protein TERM 19 15687 - 15665 - G 71 -2.1 -5.19819 | gap 1, overlap 15671 AAATAAAACGAAAAA CAGAAAGAAA TGCG TTTCTC-CTG CTGATCGGAACAGGG TERM 20 16475 - 16488 + H 71 -6.7 -4.15788 | opp_overlap 16475, overlap 16477 16478 GTCTTTCACCTATAA GCTCT TTTG AGAGC TTTCTTGGAAAGCTT TERM 21 17028 - 17009 - H 72 -2.2 -5.19328 | opp_overlap 17009 17010, overlap 17010 ATCGTATAAGAAAAA GTTTTTTT TTAA AAAAAAGC TTTTGTGCGAGAGAC TERM 22 19523 - 19512 - g 74 -4.4 -4.91873 | TATATTAAGGAAAAA GGAT TGCA ATCC CCTCAAAATAAAAAA TERM 23 19629 - 19614 - g 73 -2.6 -5.08824 | GCGCTATCTAAAAAA TTAAGC GCGC ACTTAA TCAAGGAAGAGTAGG topA 17070 - 19643 + | DNA topoisomerase I/SWI domain fusion protein CTLon_0012 20677 - 19673 - | putative oxidoreductase CTLon_0013 20952 - 20656 - | integral membrane protein TERM 24 21450 - 21433 - g 73 -9.9 -2.93335 | opp_overlap 21432, overlap 21432 TGTTACAAAGACAAT CTGTTGC GTTA GCAACAG CTCTCTTGGAGGAGA CTLon_0014 21057 - 22436 + | hypothetical protein TERM 25 22632 - 22612 - g 88 -11.1 -3.83844 | GGTAGCAATCAAGAA TGCGCGGCT GAA AGCAGCGCA TAAACAAGCGAGTTT CTLon_0015 22436 - 23014 + | hypothetical protein TERM 26 23600 - 23618 + G 80 -6.1 -4.82901 | opp_overlap 23600 23614 TCACCGAAGAAGGAA GTTTGTT AAAGA AACAAAC TTTTTGTAAAGGGCA TERM 27 23973 - 23963 - g 74 -4 -4.93318 | GAGAAGGTAGAAAAA TGTT ATT AACA TGGTCCCAAGGCATT CTLon_0016 23005 - 24279 + | hypothetical protein TERM 28 24365 - 24388 + G 70 -3.8 -4.77165 | opp_overlap 24365 24369 24370 TGTCCAGCGCAGAGA TGAAGCAGCT CGTG AGCTGATGCA TTTTGTTATGCAGAC CTLon_0017 24282 - 24818 + | hypothetical protein TERM 29 25041 - 25011 - f 76 -9.1 -3.74872 | opp_overlap 25018 25034, overlap 25013 25016 ACTGACGCCACGAAA TATAAGAGGTCGC AGATG GCAACCTCTTAAA GTAGAGTCTTCTAGA TERM 30 25039 - 25013 - f 85 -11.7 -3.4582 | opp_overlap 25018 25034, overlap 25011 25016 TGACGCCACGAAATA TAAGAGGTCGC AGATG GCAACCTCTTA AAGTAGAGTCTTCTA TERM 31 25036 - 25016 - f 76 -9 -3.86252 | opp_overlap 25018 25034, overlap 25013 25011 CGCCACGAAATATAA GAGGTCGC AGATG GCAACCTC TTAAAGTAGAGTCTT recA 25078 - 26136 + | recombinase A TERM 32 26158 - 26197 + F 100 -12.5 -4.77173 | gap 1, opp_overlap 26166 26172, overlap 26162 26163 TATTCCCTATCGATT CTAATCAAGGAAAAGAAG TTTTT CTTCTTTTCCTTGGT-AG TTTCTTTTCTCCCCC TERM 33 26162 - 26194 + F 100 -14.4 -3.28878 | opp_overlap 26166 26172, overlap 26158 26163 CCCTATCGATTCTAA TCAAGGAAAAGAAG TTTTT CTTCTTTTCCTTGG TAGTTTCTTTTCTCC TERM 34 26163 - 26193 + F 100 -15.7 -2.56242 | opp_overlap 26166 26172, overlap 26162 26158 CCTATCGATTCTAAT CAAGGAAAAGAAG TTTTT CTTCTTTTCCTTG GTAGTTTCTTTTCTC TERM 35 26190 - 26166 - f 84 -11.6 -3.35992 | opp_overlap 26163 26162 26158, overlap 26172 ATCGATTCTAATCAA GGAAAAGAAG TTTTT CTTCTTTTCC TTGGTAGTTTCTTTT TERM 36 27217 - 27243 + G 93 -8.9 -4.56597 | gap 1, opp_overlap 27217 CAGAAGCAAATGAAA GGTTTTG-ATGC GGGA GCATACAAAACC TTTTTCCCAGAAAGC TERM 37 27243 - 27217 - g 83 -8.9 -4.16205 | gap 1, opp_overlap 27217 CAGAAGCAAATGAAA GGTTTTG-ATGC GGGA GCATACAAAACC TTTTTCCCAGAAAGC TERM 38 27967 - 28000 + G 73 -2.5 -5.24129 | gap 1 CTAGCTAGCGATGCC GAAATTGCGAAT-TGT TTA GCAGATGCGCAATATC TTTTTTCTAAAGGCG TERM 39 28155 - 28117 - g 70 -5.5 -4.50988 | gap 1, opp_overlap 28122 28149, overlap 28119 28121 28122 28146 GTAGAGCAAAAAGAA TACACGGAAGCTTTGGAA GTAT TTCAAAAGCTTCC-TTTA GGGGAGGATGCTTGG TERM 40 28152 - 28121 - g 73 -8.8 -3.48772 | opp_overlap 28122 28149, overlap 28119 28117 28122 28146 AGCAAAAAGAATACA CGGAAGCTTTGGAA GTAT TTCAAAAGCTTCCT TTAGGGGAGGATGCT TERM 41 28122 - 28151 + G 100 -12.3 -3.53444 | opp_overlap 28121 28119 28117 28122 28146, overlap 28149 GCAAAAAGAATACAC GGAAGCTTTGGAA GTAT TTCAAAAGCTTCC TTTAGGGGAGGATGC TERM 42 28151 - 28122 - g 88 -12.3 -2.67636 | opp_overlap 28122 28149, overlap 28121 28119 28117 28146 GCAAAAAGAATACAC GGAAGCTTTGGAA GTAT TTCAAAAGCTTCC TTTAGGGGAGGATGC CTLon_0019 26422 - 28248 + | putative exported lipoprotein TERM 43 28672 - 28645 - g 72 -9.2 -3.0782 | overlap 28665 28670 TAATTTTTGAAGAGA TTGCTCTGCTCT CAGA AGAGCAGAACCA GGTACTGAAAACTGT TERM 44 29325 - 29341 + G 73 -2.9 -5.09426 | overlap 29327 GCTTTGACTCCGATG CGCCAAG GAC TTTGGGG TTTTTTGCAGTTGAA TERM 45 29501 - 29533 + G 83 -9.2 -3.95324 | opp_overlap 29501, overlap 29503 29510 ATTGCGTTTCATGAA TGGGGAGATTCTGC ATCAA GCAGATTTTCCCTA TTATTCTTACAACTA TERM 46 29503 - 29531 + G 76 -9.6 -3.56318 | opp_overlap 29501, overlap 29501 29510 TGCGTTTCATGAATG GGGAGATTCTGC ATCAA GCAGATTTTCCC TATTATTCTTACAAC TERM 47 29510 - 29524 + G 70 -5.7 -4.32048 | opp_overlap 29501, overlap 29503 29501 CATGAATGGGGAGAT TCTGC ATCAA GCAGA TTTTCCCTATTATTC recD 28245 - 29735 + | exodeoxyribonuclease V alpha chain CTLon_0021 29801 - 29980 + | hypothetical protein TERM 48 30031 - 30053 + T 100 -15.6 -3.28712 | opp_overlap 30031 GGTTTCTATTATTAA GACCTGGGCG TTG TGCCCAGGTC TTGTGAAAAACGGGA TERM 49 30053 - 30031 - T 100 -14.9 -3.21099 | opp_overlap 30031 GGTTTCTATTATTAA GACCTGGGC GTTGT GCCCAGGTC TTGTGAAAAACGGGA CTLon_0022 30800 - 30081 - | ABC transporter ATP-binding protein CTLon_0023 31297 - 30809 - | hypothetical protein kdsA 32103 - 31294 - | 2-dehydro-3-deoxyphosphooctonate aldolase CTLon_0025 32589 - 32882 + | hypothetical protein CTLon_0026 32882 - 33199 + | hypothetical protein TERM 50 33503 - 33522 + G 70 -7.9 -3.72576 | opp_overlap 33501 33506 33509, overlap 33506 GAAGTGGAATTGATA GAAGAGG AAGAAC CCTCTTC TTTAATCCCGGAAGA TERM 51 34067 - 34090 + G 93 -12.4 -3.01188 | overlap 34051 34050 GGCACACCGATTCTC GGAGATCCCG TTTA CGGGATCCCC TCTATAAATTTTCGT sfhB 33281 - 34288 + | ribosomal large subunit pseudouridine synthase D CTLon_0028 34388 - 34624 + | hypothetical protein TERM 52 34641 - 34618 - T 74 -9.6 -3.14454 | opp_overlap 34618, overlap 34616 AGAAATTATGGAAGA GCGGTAAACG TATA CGTTTACAGC TTTTTGAGTCATTGT TERM 53 34618 - 34641 + T 90 -9.6 -4.71382 | opp_overlap 34618 34616 AGAAATTATGGAAGA GCGGTAAACG TATA CGTTTACAGC TTTTTGAGTCATTGT gyrA2 36235 - 34763 - | DNA topoisomerase IV subunit A TERM 54 36050 - 36024 - G 70 -9.3 -2.78935 | AGAGCTTCCACGATA GGCGCATCACC ATGCG GGTGCAGCGCC ATCGTACGTCCTGCG TERM 55 36133 - 36111 - G 72 -10 -2.82142 | overlap 36110 36121 TCCATACGGAATAAG GTCCAAAGAA GCC TTCTTTGAAC AGGCTTGAGGCCATC gyrB 38067 - 36250 - | DNA topoisomerase IV subunit B TERM 56 36623 - 36608 - G 72 -6.2 -4.24342 | GTTTTTAGGAAGAAA GTAATC ATAA GATTAC GAATATGCATACCAT TERM 57 37032 - 37057 + g 70 -5.5 -4.56597 | gap 1, opp_overlap 37055 GTTTGATTTTCTCTT GGATCCGTTCCG CGC TGGAA-GGATTC TTTTTCAAAGAAGAG TERM 58 38836 - 38865 + G 100 -12.3 -4.78848 | opp_overlap 38832 38831 38842, overlap 38838 CTATTTACAAGCTGC TAGAGAGCAAAAG CTTT CTTTTGCTCTCCA TTTTCTCTTTCAAAA TERM 59 38838 - 38863 + G 100 -14.9 -2.67228 | opp_overlap 38832 38831 38842, overlap 38836 ATTTACAAGCTGCTA GAGAGCAAAAG CTTT CTTTTGCTCTC CATTTTCTCTTTCAA hemA 38447 - 39454 + | glutamyl-tRNA reductase TERM 60 39958 - 39946 - f 83 -7.7 -4.61873 | CTTTAGAAATCAAAA GAACG AGT CGTTC GTGCCCGATTTTTTT sycE 40173 - 40574 + | Type III secretion system chaperone TERM 61 42716 - 42732 + G 77 -10.9 -2.78211 | overlap 42715 GAACGTTCATGTGTC CTTCACC AAT GGTGAAG CTGTTTTGACAGGAT TERM 62 42810 - 42795 - g 70 -7.6 -3.61517 | ACGGTTGTGCAAGAA CTGCAA GATA TTGCAG GGATTCGTGCGGTGA CTLon_0033 40578 - 43067 + | phosphopeptide binding protein ( to be a TTSS protein) CTLon_0034 43111 - 43362 + | hypothetical protein CTLon_0035 43389 - 43640 + | hypothetical protein CTLon_0036 43659 - 44108 + | hypothetical protein TERM 63 44428 - 44405 - g 77 -6.1 -4.58395 | gap 1, overlap 44406 44407 TCCATTTGTTAAAAA GTCGTTTGTG GGATG CACAAACG-C AGATGCAAATGCAAG TERM 64 44427 - 44407 - g 71 -9.8 -2.60508 | overlap 44405 44406 CATTTGTTAAAAAGT CGTTTGTG GGATG CACAAACG CAGATGCAAATGCAA CTLon_0037 44128 - 44799 + | hypothetical protein sctN 44801 - 46129 + | type III secretion system ATPase TERM 65 46465 - 46448 - g 74 -4.1 -5.04733 | overlap 46450 TAAGCAGAAAGAAAA TGTGCTG GCAG CAGCAAA GGAGCTGGAAAGGGC CTLon_0039 46152 - 46658 + | hypothetical protein CTLon_0040 46662 - 47513 + | hypothetical protein TERM 66 48109 - 48088 - g 76 -9.5 -3.54424 | gap 1, opp_overlap 48087 48088 TCTTAGTGCCTGAAA CTACAG-CGC AGA GCGCCTGTAG ATTCTTAGAAGAGAA TERM 67 48088 - 48109 + G 70 -9.5 -2.76696 | gap 1, opp_overlap 48088, overlap 48087 TCTTAGTGCCTGAAA CTACAG-CGC AGA GCGCCTGTAG ATTCTTAGAAGAGAA TERM 68 48219 - 48238 + G 81 -4.3 -5.27476 | gap 1, overlap 48219 48221 TCAGAAGAAGATTGG C-ACCAGG TTGTT CCTGGTAG TTTTATTTTGTTAGA sctQ 47523 - 48644 + | type III secretion system protein TERM 69 49736 - 49711 - g 93 -12 -3.59262 | GCTTACATCTGGAAA CGTAGCAGAA TTTTGG TTCTGCTACG CTCCAGGAAACTGTA pkn5 48779 - 50251 + | putative serine/threonine-protein kinase (TTSS effector protein) TERM 70 50473 - 50456 - g 70 -7.1 -3.90048 | overlap 50454 CTTGCCCTAAAAATA TTGCTAA GAAT TTAGCAA AGAAAAGCTCTCCAG TERM 71 50885 - 50864 - g 73 -5.2 -4.73094 | overlap 50859 50865 AAGAGCAACAGAAAA CCATTTCC AATCCA GGAAATGA CCAGACTCTTCCTGG TERM 72 52005 - 51976 - g 77 -10.8 -2.75844 | opp_overlap 51979 51987, overlap 51975 GTTGTCATTGGAAAT CAAGCTAACGTC GATAAG GTCGTTAGCTTG CTAAATGGGTTGGAC CTLon_0043 50248 - 53013 + | Type III secretion structural protein (outer membrane ring) TERM 73 53090 - 53132 + T 91 -9.3 -4.87786 | gap 1 GTACACAGGGGGGAA GTCAAGATGGACTGGAGTTA GCCG TATCTCCGGTTC-TCTTGGC TTTTTATGGAGTTAG aspC 54397 - 53327 - | ATP:guanido phosphotransferase CTLon_0045 54908 - 54387 - | hypothetical protein TERM 74 55182 - 55206 + r 79 -2.2 -5.61596 | gap 1 CGATGGGGCCAGGAC GGGTCTAATGT TATC AC-TTAAACCC TTTTTTTCTGCAACT rrf 55819 - 55280 - | ribosome recycling factor pyrH 56553 - 55816 - | uridylate kinase TERM 75 55904 - 55886 - G 75 -8.2 -3.90744 | opp_overlap 55886 55884 55874 GCCTCCTCTAAAGAA TGTCTAGC AAA GCTAAACA TCTTTATGGGGATTC tsf 57414 - 56566 - | elongation factor Ts TERM 76 56643 - 56667 + g 70 -7.9 -3.737 | opp_overlap 56643 56645, overlap 56665 CAGCTCTATCAATCA GACCTTGAATT GTG ACTTCAGGGTC TTTAATGAAGGCTTG TERM 77 56698 - 56677 - G 74 -9.5 -3.33815 | opp_overlap 56665 56677 56696, overlap 56696 AGGGTCTTTAATGAA GGCTTGTTC TAAT AAACAAGCC TCTTGGAAAAAGGCT TERM 78 56712 - 56696 - G 73 -7.3 -4.20367 | opp_overlap 56677 56696, overlap 56677 TGTTCTAATAAACAA GCCTCTT GGA AAAAGGC TTTAAATTTCCCTTG TERM 79 57230 - 57198 - G 70 -7.8 -3.65046 | gap 1, overlap 57199 CGTTGACTTCAACAA GTGCTGCACCACGTT CATC AACG-AGTGCAGCAA TCACGCCTTCTTTTG TERM 80 57229 - 57199 - G 81 -11.3 -2.78813 | gap 1, overlap 57198 GTTGACTTCAACAAG TGCTGCACCACGTT CATC AACG-AGTGCAGCA ATCACGCCTTCTTTT rpsB 58259 - 57411 - | 30S ribosomal protein S2 TERM 81 57778 - 57813 + g 70 -7.6 -3.64283 | gap 1, opp_overlap 57771 57789 ATTACAATCAGAAGC CCTGGGAGAGAGTTCAT ATG ACGAACGC-CTTCCAGG TTGTTGAGCAATTTG TERM 82 58542 - 58530 - R 75 -3.5 -5.3321 | overlap 58524 AAGTAAGAACAAAAA TTTTT GCA AAAAA AACTGGACCCGACCG TERM 83 58570 - 58545 - R 100 -13.3 -5.75342 | TTTTTGCAAAAAAAA CTGGACCCGAC CGAA GTCGAGCCCAG AAACACGGATAGTGT ompA 59827 - 58643 - | major outer membrane protein TERM 84 60170 - 60150 - H 78 -3.3 -5.40072 | overlap 60152 TTTTTGCGAAAAAAA TCGCTCT GAAACCG AGAGCAA AAGCCATGTTGGCAA TERM 85 60183 - 60173 - H 75 -6.8 -4.37534 | AAACCGAGAGCAAAA GCCA TGT TGGC AAGATGTTGATTGTT TERM 86 62105 - 62059 - g 82 -8.1 -4.51097 | opp_overlap 62059 62057 62055 62061, overlap 62060 62061 CCAACTACGATAAAA TTCTATTTCTGGATCTATTGC GTACG GCAGTAGATCCAGAAAAAGTC TCTATCTCTTTATTA TERM 87 62059 - 62105 + G 77 -10.3 -3.19051 | opp_overlap 62059 62060 62061, overlap 62057 62055 62061 CCAACTACGATAAAA TTCTATTTCTGGATCTATTGC GTACG GCAGTAGATCCAGAAAAAGTC TCTATCTCTTTATTA TERM 88 62104 - 62060 - g 86 -11.6 -3.29935 | opp_overlap 62059 62057 62055 62061, overlap 62059 62061 CAACTACGATAAAAT TCTATTTCTGGATCTATTGC GTACG GCAGTAGATCCAGAAAAAGT CTCTATCTCTTTATT TERM 89 62061 - 62103 + G 100 -17.3 -3.13685 | opp_overlap 62060 62059 62061, overlap 62059 62057 62055 AACTACGATAAAATT CTATTTCTGGATCTATTGC GTACG GCAGTAGATCCAGAAAAAG TCTCTATCTCTTTAT TERM 90 62103 - 62061 - g 100 -15.1 -2.57238 | opp_overlap 62061 62059 62057 62055, overlap 62060 62059 AACTACGATAAAATT CTATTTCTGGATCTATTGC GTACG GCAGTAGATCCAGAAAAAG TCTCTATCTCTTTAT TERM 91 63123 - 63160 + G 83 -11.4 -3.02144 | opp_overlap 63114, overlap 63126 GGAAGAGTGCCTATC GATGTCGCATATAACC GTTCGG GGTTATATGCGACTGC TATTGGGCAACATAC TERM 92 63126 - 63157 + G 100 -16.1 -2.73875 | opp_overlap 63114, overlap 63123 AGAGTGCCTATCGAT GTCGCATATAACC GTTCGG GGTTATATGCGAC TGCTATTGGGCAACA pbpB 60435 - 63677 + | penicillin-binding protein TERM 93 63999 - 64044 + G 70 -9.2 -2.88579 | gap 1, opp_overlap 64008 64009, overlap 63993 64007 64008 TGTTATGGCGTGGCT TTAGATAAAG-CCGATCGCTT AGAAG AAGCGATCGGGCATTATCAAG TGTATGCAGAGTTAC TERM 94 64034 - 64008 - g 90 -10.9 -4.03234 | opp_overlap 63993 64008 64007 63999, overlap 64009 GTGGCTTTAGATAAA GCCGATCGCTT AGAAG AAGCGATCGGG CATTATCAAGTGTAT TERM 95 64008 - 64035 + G 76 -10.7 -2.61239 | gap 1, opp_overlap 64008 64009, overlap 63993 64007 63999 GTGGCTTTAGATAAA G-CCGATCGCTT AGAAG AAGCGATCGGGC ATTATCAAGTGTATG TERM 96 64033 - 64009 - g 100 -14.4 -3.01726 | opp_overlap 63993 64008 64007 63999, overlap 64008 TGGCTTTAGATAAAG CCGATCGCTT AGAAG AAGCGATCGG GCATTATCAAGTGTA TERM 97 64478 - 64489 + G 82 -5.8 -4.98522 | opp_overlap 64478 64476 GTTAAATGCAGAAGA TGCG GATG CGCA TTTTTATATAGGATT CTLon_0052 63741 - 64748 + | TPR repeat-containing protein TERM 98 64879 - 64895 + F 79 -8.7 -3.94746 | AAGTTTTTTTCTTAA GGGCTGT TTG ACAGTCC TTTCCTTGGGTCTAG TERM 99 64903 - 64937 + F 79 -7.9 -4.26495 | overlap 64905 64912 GACAGTCCTTTCCTT GGGTCTAGGGAGAGA CATCC TCTTTCCCTAGGCTG TCTTTCTTTTTTTTC TERM 100 64905 - 64935 + F 95 -12.7 -3.65523 | overlap 64903 64912 CAGTCCTTTCCTTGG GTCTAGGGAGAGA CATCC TCTTTCCCTAGGC TGTCTTTCTTTTTTT TERM 101 64912 - 64943 + F 93 -5.2 -5.75342 | overlap 64905 64903 TTCCTTGGGTCTAGG GAGAGACATCCT CTTTCCCT AGGCTGTCTTTC TTTTTTTTCAAAAAG TERM 102 65429 - 65417 - g 75 -3.3 -5.14477 | opp_overlap 65417 GAGACATTTAAAAAA TTGGG CAT CCCTA TTGATGAGCAAAAAA CTLon_0053 65090 - 66541 + | cysteine desulfurase activator complex subunit SufB CTLon_0054 66544 - 67311 + | ABC transporter ATP-binding protein TERM 103 67591 - 67607 + G 81 -4.3 -5.40072 | overlap 67592 67594 ATCATCGTGGCCCCT TTACGCG AAG CGCGTGC TTTTTTTCAGAAGCA TERM 104 67592 - 67606 + G 72 -7.8 -3.83561 | overlap 67591 67594 TCATCGTGGCCCCTT TACGCG AAG CGCGTG CTTTTTTTCAGAAGC TERM 105 67594 - 67604 + G 71 -8.2 -3.49966 | overlap 67592 67591 ATCGTGGCCCCTTTA CGCG AAG CGCG TGCTTTTTTTCAGAA TERM 106 67904 - 67874 - g 87 -8.3 -4.56775 | opp_overlap 67875, overlap 67875 ATCTTTTTGGAAAAA CGCTCTGTTTCCT AGGCG AGGAAGCAGAGCT TGTTTTGACCATGAA TERM 107 67875 - 67903 + G 100 -14 -4.18506 | opp_overlap 67875 67874 TCTTTTTGGAAAAAC GCTCTGTTTCCT AGGCG AGGAAGCAGAGC TTGTTTTGACCATGA TERM 108 67903 - 67875 - g 89 -11.8 -3.33744 | opp_overlap 67875, overlap 67874 TCTTTTTGGAAAAAC GCTCTGTTTCCT AGGCG AGGAAGCAGAGC TTGTTTTGACCATGA TERM 109 68419 - 68433 + G 75 -5.7 -4.67234 | opp_overlap 68419 68418 ATAGAAGCCAAACAG GCTCT ACAAA AGAGC TTTTTGACGTTAGAT CTLon_0055 67315 - 68502 + | hypothetical protein TERM 110 69206 - 69234 + G 100 -15.4 -2.84192 | overlap 69202 69232 AAAGAACTTTTGGAA TCGCTTCCTCCT GTTGA AGGAGGAGGCGA TATGGTGATCGTATA sufS 68495 - 69700 + | cysteine desulfurase parB 69836 - 70681 + | putative chromosome partitioning protein dppF 71503 - 70673 - | ABC transport protein, ATPase component TERM 111 70760 - 70735 - G 73 -10.5 -2.53911 | GTAATTGTGAATGGA GCAGCATTCGT GTGT AGGAATGCTGC GGATTACAAAAGATT dppD 72461 - 71496 - | ABC transport protein, ATPase component TERM 112 72290 - 72248 - G 100 -15 -4.72272 | overlap 72250 TCTCTTTATTAAAAA GAGCCTCTCCTGAAAGAGAA AAG TTCTCTTCCGGGAGAAGCTG CATAAGAGATTGTGC TERM 113 72288 - 72250 - G 100 -17.6 -3.98256 | overlap 72248 TCTTTATTAAAAAGA GCCTCTCCTGAAAGAGAA AAG TTCTCTTCCGGGAGAAGC TGCATAAGAGATTGT TERM 114 72532 - 72521 - H 80 -3 -5.63504 | opp_overlap 72521 AATCTTAGAAAAAAA CAAA AAAT TTTG GTTCTTAGTACATTC CTLon_0060 72622 - 73296 + | hypothetical protein TERM 115 73819 - 73835 + G 100 -10.1 -4.83615 | ATCCCGTCTCTGCTA TGGTGCG TAT CGCGCCA TTTTTATCGGCGATC TERM 116 74001 - 74013 + G 70 -7.7 -3.72027 | TTTAAACTTGCGATT CTTCC TCA GGAAG TTCTTCCTGGAACAT CTLon_0061 73299 - 74579 + | low-affinity inorganic phosphate transporter TERM 117 75001 - 75025 + G 100 -11.4 -3.99324 | opp_overlap 75001, overlap 74988 GATTGTATAGGAGAA GTCGCGCGAC AGGCG GTCGCGCAAC TTTCTCCTGGTAGAG TERM 118 75025 - 75001 - g 100 -13.6 -3.47078 | opp_overlap 75001 74988 GATTGTATAGGAGAA GTCGCGCGAC AGGCG GTCGCGCAAC TTTCTCCTGGTAGAG pgk 74707 - 75918 + | phosphoglycerate kinase TERM 119 75951 - 75967 + F 100 -7.2 -6.23545 | opp_overlap 75951 CTTTGTTAATGAAAA GCCCTG TTTAT CGGGGC TTTTTTTTGTTTAAA CTLon_0063 76178 - 77146 + | hypothetical protein TERM 120 77769 - 77787 + G 75 -8.8 -3.66256 | GGTGGGTTTGCTTTT GCGTATGG CTA CCTTACGC TCTTTTGAACATGTC TERM 121 78041 - 78031 - g 75 -5.4 -4.82901 | GTTCGTTTAGAAAAA GAAG ACC CTTC TTCAGACTATTCTCA TERM 122 78331 - 78341 + G 78 -5.4 -5.05606 | opp_overlap 78328, overlap 78328 CGTATGATCGAAGGT TTGG TAA CCAA TTTCTTTTTCTTACC CTLon_0064 77197 - 78393 + | hypothetical protein TERM 123 78873 - 78893 + G 79 -8.3 -4.08767 | opp_overlap 78872, overlap 78875 GGCCTGTTAAGAAGG TCGAATCGG TTG CCGATTCTA TTTTACAGAGATCAA TERM 124 78875 - 78891 + G 84 -10.9 -3.6422 | opp_overlap 78872, overlap 78873 CCTGTTAAGAAGGTC GAATCGG TTG CCGATTC TATTTTACAGAGATC TERM 125 78920 - 78933 + G 71 -6.7 -4.12456 | TCAAAAGGAAATTTT TCGTC TTGG GACGA TTTTACACATGATGT TERM 126 79087 - 79104 + G 89 -7.1 -5.00616 | opp_overlap 79095 79096 GTACCTCTCTGTAAG TTTCGAA ATTC TTCGAAA TTTTTTAGAAGAGAA TERM 127 79375 - 79410 + G 73 -8.4 -3.64822 | gap 1, opp_overlap 79379, overlap 79376 79378 79379 GCAAGCATTTTTAGC AGAA-GTTGTGTTGCAC GTG GTGCAACACCACATTCA TTTAAATGCAAAGGT TERM 128 79376 - 79409 + G 83 -11.9 -2.78679 | gap 1, opp_overlap 79379, overlap 79375 79378 79379 CAAGCATTTTTAGCA GAA-GTTGTGTTGCAC GTG GTGCAACACCACATTC ATTTAAATGCAAAGG TERM 129 79378 - 79406 + G 80 -10.3 -3.54408 | opp_overlap 79379, overlap 79376 79375 79379 AGCATTTTTAGCAGA AGTTGTGTTGCAC GTG GTGCAACACCACA TTCATTTAAATGCAA TERM 130 79379 - 79405 + G 95 -13.8 -2.72324 | opp_overlap 79379, overlap 79378 79376 79375 GCATTTTTAGCAGAA GTTGTGTTGCAC GTG GTGCAACACCAC ATTCATTTAAATGCA TERM 131 79405 - 79379 - g 100 -13.8 -3.41051 | opp_overlap 79379 79378 79376 79375 GCATTTTTAGCAGAA GTTGTGTTGCAC GTG GTGCAACACCAC ATTCATTTAAATGCA TERM 132 79624 - 79608 - g 76 -9.5 -3.53012 | CGCCTTTTTGGCAAA TGATTCC CTC GGAATCA GGAGATGGAACTTTC CTLon_0065 78479 - 79657 + | hypothetical protein nth 80289 - 79654 - | endonuclease III TERM 133 79921 - 79905 - G 78 -2.3 -5.4477 | AAATGCTTAAAAAAA CAGAA GCTGTTT TTCTG CCTACTCCTGGAAGA trmE 81630 - 80296 - | tRNA modification GTPase TrmE TERM 134 82162 - 82172 + G 90 -4 -5.60993 | CTGCACGACTACGCG TCAT TTA ATGA TTTTTTTGTACGAAA psdD 81898 - 82803 + | phosphatidylserine decarboxylase TERM 135 83065 - 83052 - g 77 -4.5 -5.03314 | CCGATCCTGAAAAAA CGTCA ATAT CGACG TAAATATTTATTCGA TERM 136 83204 - 83233 + G 81 -5.1 -5.23765 | gap 2 ACATAAGGCTTTCCG GCATG-GC-GCCT ATAAAG AGGCTGCACATGC TTTTTCTCTTCTTTC TERM 137 83531 - 83544 + G 71 -6.7 -4.09685 | TGTCGATGCTGGGAT GCTCT TTAG AGAGC TTTTAGGGGATCCGG CTLon_0069 82869 - 84194 + | hypothetical protein TERM 138 84181 - 84196 + F 71 -3.2 -5.12474 | overlap 84182 TAGAGGTTTCTTTAC TGCTAG CTGC CTAGCC TTTTTCTCTCTTGTA TERM 139 84235 - 84255 + F 89 -3.9 -5.70761 | CAATATAAGATCTTA GCCCTCG TATTGCT CGAGTGC TTTTTGTTTTCTTTT TERM 140 85492 - 85511 + G 72 -9.4 -3.2059 | opp_overlap 85488, overlap 85490 85488 85494 ATAAAGAGGAATGTC TAGAGAAG CTCT CTTCTCTA TATATTGTAGTCGAT TERM 141 85737 - 85722 - g 71 -3.2 -4.92385 | overlap 85724 GATACGCAAAGAAAA GCCC GAGCTCAT GGGC TACGGCAGCTGTTAA TERM 142 86184 - 86160 - g 71 -10.1 -2.71924 | overlap 86159 CATCGTTCCGGAAAG CCGATTCTG ATCGGGA CAGAATCGG TGGAGGTGTCTGAGA secA 84453 - 87362 + | preprotein translocase subunit SecA TERM 143 87404 - 87379 - T 95 -13.4 -2.90615 | opp_overlap 87379, overlap 87376 AGGCTTGTCAAACTA GGCAATCTCC TTAATT GGAGATTGCC TTTTCTATTTAGAGA TERM 144 87379 - 87404 + T 100 -13.4 -4.78848 | opp_overlap 87379 87376 AGGCTTGTCAAACTA GGCAATCTCC TTAATT GGAGATTGCC TTTTCTATTTAGAGA CTLon_0071 87983 - 87456 - | hypothetical protein TERM 145 88035 - 88047 + r 78 -3.5 -5.43866 | overlap 88020 88019 TTTTATTATTTCTAA TAAAA GAT TTTTA TTTTTTTACAAATTA engA 89532 - 88060 - | GTP-binding protein EngA TERM 146 89307 - 89277 - G 89 -11.3 -3.43492 | gap 2, opp_overlap 89271, overlap 89280 89286 GGATATCTACTACAA GCAGCAGAACAGAGG CTT CCTCTG--CTGCTGC TAAAGCTTGTTGATG TERM 147 89307 - 89280 - G 81 -11.4 -2.86747 | gap 1, opp_overlap 89271, overlap 89277 89286 TATCTACTACAAGCA GCAG-AACAGAGG CTT CCTCTGCTGCTGC TAAAGCTTGTTGATG TERM 148 89300 - 89286 - G 78 -10 -3.48684 | opp_overlap 89271, overlap 89277 89280 CTACAAGCAGCAGAA CAGAGG CTT CCTCTG CTGCTGCTAAAGCTT pcnB 90880 - 89648 - | polyA polymerase TERM 149 90063 - 90073 + g 71 -3.2 -4.96646 | overlap 90057 CGTAAGCGAGAGAAG GCTT CTA GAGC TTTTTCCTTGTCTAC TERM 150 90906 - 90936 + r 77 -6.2 -4.84146 | opp_overlap 90903 90899, overlap 90903 AAAGTTAAGCAATCG CCTCTGGTGATT TCTGAAT AATGACCGGAGG TTTATTTTGTGTGAT clpX 92154 - 90895 - | ATP-dependent protease ATP-binding subunit clpP 92775 - 92164 - | ATP-dependent Clp protease proteolytic subunit tig 94270 - 92942 - | trigger factor TERM 151 95959 - 95978 + G 70 -2.8 -4.98531 | gap 1, opp_overlap 95964, overlap 95963 TTAGCTATTTGGATG GAGAACTCG AGG CGAGA-CTC TTTTTCCTTTACGAC CTLon_0077 94629 - 98120 + | putative helicase TERM 152 98628 - 98607 - g 74 -10.1 -3.09175 | AATTCTGATTGAAGA GCCTATGGC AGCA GCCATTGGC GTCGATCTCCCTGTA mreB 98125 - 99225 + | cell shape determining protein TERM 153 99529 - 99548 + G 93 -12.2 -3.62224 | opp_overlap 99529 GAGATCCTCAAGAGA TGCGTGCA GAGC TGCACGCA TTATTCCGAGGGTGT TERM 154 99548 - 99529 - g 86 -12.2 -3.08371 | opp_overlap 99529 GAGATCCTCAAGAGA TGCGTGCA GAGC TGCACGCA TTATTCCGAGGGTGT TERM 155 100145 - 100157 + G 74 -4.1 -5.0538 | opp_overlap 100145 ATTATACGCAGTGAA TCCAG AAT TTGGA TTTTTTGGAGTGGCA pckA 99222 - 101021 + | phosphoenolpyruvate carboxykinase TERM 156 101116 - 101060 - f 73 -9.2 -2.89683 | opp_overlap 101060 101072 101077 ATTCTAGTTTAGATA CTATTGTTTTTCTGTTTTAAAAAACA TTTTT TATTTTTAAAATTAGAAAAACAATAG TTTTCTGGATGATCT TERM 157 101060 - 101116 + F 86 -9.2 -4.44245 | opp_overlap 101060, overlap 101072 101077 ATTCTAGTTTAGATA CTATTGTTTTTCTGTTTTAAAAAACA TTTTT TATTTTTAAAATTAGAAAAACAATAG TTTTCTGGATGATCT TERM 158 101072 - 101085 + F 93 -3.9 -5.93252 | opp_overlap 101060, overlap 101060 101077 ATACTATTGTTTTTC TGTTT TAAA AAACA TTTTTTATTTTTAAA TERM 159 102147 - 102163 + G 72 -7.3 -3.91027 | opp_overlap 102147 AATGAACAGGTCAAA CTCAACG GTC TGTTGAG TTTAGTATATGCTTA CTLon_0080 101133 - 103436 + | hypothetical protein TERM 160 103460 - 103439 - f 79 -5.9 -4.92385 | opp_overlap 103426 103439, overlap 103434 TAGATTTAAATAAAA TCGTTTTAG AGGG CAAAAACGA TTATGAGAAACCATC CTLon_0081 103463 - 104635 + | hypothetical protein TERM 161 104688 - 104649 - T 100 -16.7 -3.88062 | opp_overlap 104640 AGACATGAGAGGAAA TCTTCTCTTAATCTCCC TTGAGG GGGAGGTTAAGAGAAGA GGGTTCGGGGGGTTA ompB 105723 - 104701 - | outer membrane protein B gpdA 106861 - 105857 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CTLon_0084 108225 - 106858 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 162 107889 - 107875 - G 71 -9.2 -2.98881 | overlap 107870 107877 AGAGGAAACAGGATA GAGCCC TTT GGGCCC ATCAAATTTTAATCG CTLon_0085 108602 - 108237 - | hypothetical protein TERM 163 108434 - 108403 - G 75 -8.8 -3.5936 | opp_overlap 108396 TGTAAATGTTCTAAA TGTTGGTCATATTC ATGG GTATATGACCGACA TAGGAATTGTTTGTG TERM 164 108570 - 108557 - G 71 -6.7 -4.07885 | opp_overlap 108556 TACGTTTCTTGAAAA GCTCA ATAG TGAGC AGTTTAGACAGATCT fliI 109899 - 108595 - | type III secretion system ATPase CTLon_0087 110497 - 109973 - | hypothetical protein TERM 165 110239 - 110269 + g 74 -6.2 -4.56597 | overlap 110240 TTAGGAGAGCAAGTT CTTCTGTACAGGCA AGC TTTCTGTACAGAAA TTTTTCACAGACGAG TERM 166 110240 - 110268 + g 76 -9.7 -3.33744 | overlap 110239 TAGGAGAGCAAGTTC TTCTGTACAGGCA AGC TTTCTGTACAGAA ATTTTTCACAGACGA fliF 111506 - 110502 - | type III secretion system protein TERM 167 111617 - 111606 - R 73 -4.4 -4.86773 | opp_overlap 111606, overlap 111600 111610 111611 GAAAAGGATGAAAAA GAAG GCTT CTTC TTGTGAACAAGAAGA TERM 168 111656 - 111637 - R 75 -2.2 -5.3798 | gap 1, overlap 111640 111641 GAACAAGAAGAAAAA TTAG-CATC CGG GATGACCAA GAAGCTCAAAAGGGG TERM 169 111669 - 111690 + r 81 -7.3 -4.76963 | opp_overlap 111669 111668 111657 CAAGAAGCTCAAAAG GGGCTCT CAATTAAA AGAGCCC TTTTGTCTTCTGTAA CTLon_0089 112562 - 111780 - | hypothetical protein CTLon_0090 113713 - 112559 - | cysteine desulfurase TERM 170 113544 - 113563 + gr 89 -12.2 -3.32963 | overlap 113544 CCTGTGAGTTTGCGG GCAGAAGC TTCA GCTTCTGC TTGTAAAGTCAGAAT pgmA 114348 - 113668 - | phosphoglyceromutase TERM 171 114406 - 114417 + H 73 -3 -5.1925 | overlap 114395 CTTGTTTGCGGATTA TCTT TGCA AAGA TTTTTTACCTTATAA CTLon_0092 114643 - 115368 + | ribosomal large subunit pseudouridine synthase B TERM 172 115427 - 115396 - f 81 -10.3 -3.61398 | opp_overlap 115402, overlap 115380 115402 TTTGGTCCTTAAGAA CAAAAAGAGGGAG GTCTTT CTCCCTCTTTTTT TTGTTTAGAGGTACA TERM 173 115402 - 115421 + F 100 -10 -6.23545 | opp_overlap 115402 115396 CCTTAAGAACAAAAA GAGGGAGG TCTT TCTCCCTC TTTTTTTTGTTTAGA TERM 174 115421 - 115402 - f 100 -9.3 -5.29445 | opp_overlap 115402, overlap 115396 CCTTAAGAACAAAAA GAGGGAG GTCTTT CTCCCTC TTTTTTTTGTTTAGA TERM 175 115860 - 115873 + G 71 -3.1 -5.07652 | TGGAAGAACTACTTG CGTAT GAGA ATGCG TTTTCTTTTGAGGCC CTLon_0093 115487 - 116011 + | hypothetical protein birA 116038 - 116592 + | biotin--protein ligase CTLon_0095 117738 - 116599 - | cell cycle protein TERM 176 117709 - 117723 + g 80 -2.8 -5.57888 | overlap 117711 AAAGACCCACAAGTT CACTTG ACG CAAGTA TTTTGTTTTTTTCAT TERM 177 117756 - 117779 + r 82 -11 -3.28173 | overlap 117755 CAGGGATGTTATTCG CGTCCTTCCC GCAA GGGAAGGAAG TCTTGCTGTTCTGCT CTLon_0096 119809 - 117830 - | cation transporting ATPase TERM 178 118180 - 118205 + g 95 -12.7 -3.30124 | opp_overlap 118183, overlap 118183 TCTGCCGTGATTTAG CAAGCTCTTGA ATTT TCGAGAGCTTG TTATCAGGAGTCAGG TERM 179 118183 - 118202 + g 75 -8.6 -3.7941 | opp_overlap 118183, overlap 118180 GCCGTGATTTAGCAA GCTCTTGA ATTT TCGAGAGC TTGTTATCAGGAGTC TERM 180 119572 - 119559 - G 71 -9.5 -2.92936 | AAGGATTTAATGAGA GCGGG AGTT CCCGC TAAGAAAAAAGTAAG CTLon_0097 120579 - 119833 - | putative integral membrane protein TERM 181 120353 - 120333 - G 80 -4.8 -5.24531 | gap 1, overlap 120335 AGCTGGTATAAAAAA TC-CAACTG ATCC CAGTTGCGA ATAGGATTTTTCCAT serS 121902 - 120616 - | seryl-tRNA synthetase ribD 121944 - 123071 + | riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) TERM 182 123642 - 123676 + GF 71 -4.3 -4.77157 | gap 1, overlap 123644 123645 123649 CGAAGCTGCTATGGA TCTCATGCGGCTTGCA GGTA TGCA-GCCGTGTGGTA TTTTTGCTGAGTTAG TERM 183 123644 - 123674 + GF 72 -6.9 -3.9993 | gap 1, overlap 123642 123645 123649 AAGCTGCTATGGATC TCATGCGGCTTGCA GGTA TGCA-GCCGTGTGG TATTTTTGCTGAGTT ribA 123181 - 124455 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein ribH 124424 - 124897 + | riboflavin synthase subunit beta TERM 184 124943 - 124913 - T 91 -9.8 -4.84017 | opp_overlap 124919, overlap 124916 124919 AACGGTGTAGAAAAA GAAGAACGCCTGAT CAA ATCAGGCGTTTTTT TTGATTATAAATGGA TERM 185 124940 - 124916 - T 100 -11.5 -4.52873 | opp_overlap 124919, overlap 124913 124919 GGTGTAGAAAAAGAA GAACGCCTGAT CAA ATCAGGCGTTT TTTTTGATTATAAAT TERM 186 124937 - 124919 - T 100 -13.2 -4.36508 | opp_overlap 124919, overlap 124916 124913 GTAGAAAAAGAAGAA CGCCTGAT CAA ATCAGGCG TTTTTTTTGATTATA TERM 187 124919 - 124937 + T 100 -13.2 -5.98781 | opp_overlap 124919 124916 124913 GTAGAAAAAGAAGAA CGCCTGAT CAA ATCAGGCG TTTTTTTTGATTATA CTLon_0102 126294 - 124948 - | hypothetical protein TERM 188 125581 - 125565 - G 76 -7.9 -4.23758 | overlap 125567 AGTCCAGAGCTAAAA GAGCTCG TTG CGAGCGC CCAGCAGACAGAAGC TERM 189 125579 - 125567 - G 75 -9.1 -3.71913 | overlap 125565 TCCAGAGCTAAAAGA GCTCG TTG CGAGC GCCCAGCAGACAGAA TERM 190 126491 - 126504 + H 83 -5.3 -5.4505 | GAGATTCTACCGGCT TCATG CTAA CATGA TTTTTTGTTAGGGGC TERM 191 126843 - 126831 - g 78 -10.5 -3.29829 | TATACTTCGCGAGAA GCCGG ATG CCGGC TGTAAAAAGAAATCT CTLon_0103 126679 - 127344 + | putative lipoprotein TERM 192 127366 - 127406 + F 95 -12.6 -3.71291 | opp_overlap 127358 127370 127371, overlap 127371 TTCTAAAGGCCATTC TAAAGGCCCCCTTCCCCC GGATA GGAGAAAGGGGGCTTTTG TATTTTCCGCTTATT TERM 193 127402 - 127370 - f 100 -13.4 -3.61371 | opp_overlap 127366 127371, overlap 127358 127371 AAAGGCCATTCTAAA GGCCCCCTTCCCCC GGATA GGAGAAAGGGGGCT TTTGTATTTTCCGCT TERM 194 127401 - 127371 - f 100 -16.9 -2.7634 | opp_overlap 127366 127371, overlap 127370 127358 AAGGCCATTCTAAAG GCCCCCTTCCCCC GGATA GGAGAAAGGGGGC TTTTGTATTTTCCGC TERM 195 127371 - 127401 + F 100 -12.5 -4.89567 | opp_overlap 127371 127370 127358, overlap 127366 AAGGCCATTCTAAAG GCCCCCTTCCCCC GGATA GGAGAAAGGGGGC TTTTGTATTTTCCGC TERM 196 127889 - 127905 + G 73 -8.7 -3.43774 | AGGATATAAAATGGG CAGCCGA TTC TTGGCTG TTGCCTTTTGTGTCG dagA 127461 - 128828 + | Na(+)-linked D-alanine glycine permease TERM 197 128866 - 128837 - f 100 -14.4 -3.86266 | ACAGTAGTACAAGAA TAGGGCCACGCT TTACAG AGCATGGCCCTA AATACAGGAGACCTC TERM 198 128950 - 128970 + G 73 -8.2 -3.62607 | overlap 128948 AGTATTCGTGTCAGG GCGTTGGG ATCTC CCCACCGC TGTCTTTTTCTGATG CTLon_0105 128886 - 129338 + | hypothetical protein CTLon_0106 130006 - 129347 - | SET domain-containing protein CTLon_0107 130791 - 130003 - | Zn-dependent hydrolase ftsK 133194 - 130795 - | cell division protein TERM 199 132129 - 132144 + g 73 -2.6 -5.12785 | gap 1, opp_overlap 132101, overlap 132128 132127 AGCTAGCCAATGTTT GCTG-TA AAA TAGCAGC TTTCTTTTTTAATTC TERM 200 133499 - 133458 - R 74 -8.9 -3.57144 | gap 2, opp_overlap 133472, overlap 133459 TTCGCCATGGTGAAA CTCCCCAACTAGCAGAGCG TGCAGG CGCTCTAC--GTTGGGGAA AGAGAAGTATAATGA TERM 201 133498 - 133459 - R 74 -10.2 -2.74144 | gap 2, opp_overlap 133472, overlap 133458 TCGCCATGGTGAAAC TCCCCAACTAGCAGAGCG TGCAGG CGCTCTAC--GTTGGGGA AAGAGAAGTATAATG TERM 202 134611 - 134595 - R 78 -10.1 -3.35597 | overlap 134593 GTTAGTTGTCAAAGA TCGGGGC TCA ACCCCGA GTCGGCATCTAATAC TERM 203 135512 - 135493 - R 71 -9.2 -2.65808 | opp_overlap 135508, overlap 135489 135490 AGTCGTAACAAGGTA GCCCTACC GGAA GGTGGGGC TGGATCACCTCCTTT TERM 204 136309 - 136297 - R 79 -7.7 -4.2354 | GAAAGGCGAAAAGAA CCCTT GTT AAGGG AGTGAAATAGAACCT TERM 205 139022 - 138983 - R 100 -17.2 -4.84527 | opp_overlap 138984 138989, overlap 138984 138989 GTCATAGACTAAAAA GGAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTCT TTTCTCTAAAATACC TERM 206 138984 - 139021 + r 100 -20.7 -4.54047 | opp_overlap 138984 138983 138989, overlap 138989 TCATAGACTAAAAAG GAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTC TTTTCTCTAAAATAC TERM 207 139021 - 138984 - R 100 -20.7 -3.49993 | opp_overlap 138984 138989, overlap 138983 138989 TCATAGACTAAAAAG GAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTC TTTTCTCTAAAATAC TERM 208 138989 - 139016 + r 100 -17 -5.23292 | opp_overlap 138984 138983 138989, overlap 138984 GACTAAAAAGGAGAA GGGGGTAGCCGC TAAC GCAGCTACCCCC TTTTCTTTTCTCTAA TERM 209 139016 - 138989 - R 100 -19.2 -3.77111 | opp_overlap 138989 138984, overlap 138984 138983 GACTAAAAAGGAGAA GGGGGTAGCCGC TAAC GCAGCTACCCCC TTTTCTTTTCTCTAA dmpP 140760 - 139465 - | Na(+)-translocating NADH-quinone reductase subunit F TERM 210 140550 - 140522 - G 70 -9.5 -2.8294 | opp_overlap 140521, overlap 140519 CATTGCTTACAAGCA GCTTTCCCTCCAC AAG GAGAAGGGATAGC GATTCCTGAATCTAA TERM 211 140886 - 140861 - R 100 -14.1 -3.47322 | opp_overlap 140866, overlap 140866 TTTTATTACAAGGAA GCAAAGCCCAA GGAC CTGGGCTTTGC TGAAAGGAGCTCGTT CTLon_0110 141247 - 140903 - | preprotein translocase subunit YajC TERM 212 141362 - 141340 - R 83 -10.7 -3.75738 | opp_overlap 141340 CAGCATTAGGAATAA GGCTTTCTT GTTTT AAGAAAGCC TTTCTAAGAGCACAA TERM 213 141340 - 141362 + r 86 -11.4 -3.85698 | opp_overlap 141340 CAGCATTAGGAATAA GGCTTTCTTG TTT TAAGAAAGCC TTTCTAAGAGCACAA CTLon_0111 142542 - 141352 - | rRNA methyltransferase TERM 214 142281 - 142313 + g 80 -3.6 -5.28176 | overlap 142282 TAATTGGGATTCCTT TTTTAGGTTTTGAT GGAGA AATAAAACCTAAAG TTTTTTCTCCATCAA TERM 215 142438 - 142449 + g 86 -5.8 -5.26119 | opp_overlap 142437 TGCAAATAAATTATG GAGC GCAA GCTC TTTTGTTTTTAAAGA TERM 216 142703 - 142677 - R 78 -9.4 -3.70469 | opp_overlap 142679 AATGAGAAGGGGAAA GAGGGCCCTGTT GAT AAAAGTGCCCTC TATAAAAAAGAGAAA hctA 143107 - 142730 - | histone H1--like developmental protein TERM 217 143783 - 143802 + G 70 -2.8 -4.92385 | AACAAGAGTTATGCT CGGAGCTT GTAA AACCTCTG TTTTCTTTAGCTGTA TERM 218 144346 - 144334 - g 72 -7.7 -3.90588 | CATGCGTTAAGTAAA CTTCC ATG GGAAG AGACTCTTGGAGAAC TERM 219 144892 - 144902 + G 87 -5.4 -5.46629 | opp_overlap 144870 144871 144892, overlap 144880 CCTGAGCCAGGGAAA GAAG GCT CTTC TTTTTTTAAGGTATT CTLon_0113 143503 - 145971 + | hypothetical protein hemG 147237 - 145963 - | protoporphyrinogen oxidase hemN 148607 - 147234 - | coproporphyrinogen III oxidase TERM 220 147662 - 147643 - GR 72 -5.8 -4.39166 | gap 1, overlap 147647 147652 GCCGATATACCAAAA CCTAGAAGA TCT TCTTC-AGG AGGAAGAGAGTACCC TERM 221 148490 - 148463 - GR 71 -4.8 -4.62622 | overlap 148459 148484 GGAAGTATAAAGAAA GAGGATCTTGCT CCTG AGCAAGCCTCTC CAAGGCCGTATAGCC hemE 149590 - 148580 - | uroporphyrinogen decarboxylase TERM 222 149470 - 149460 - GR 100 -4 -6.11644 | GTATCCAAAAAAAAA TCTT TCA AAGA ACGGTTTCTTTTCAG mfd 152842 - 149603 - | transcription-repair coupling factor TERM 223 150021 - 150031 + g 71 -2.4 -5.13521 | TGTTTATGCTTCAGG GCAG CCA CAGC TTTTTTCAGTAATTT alaS 155445 - 152818 - | alanyl-tRNA synthetase TERM 224 153216 - 153198 - G 82 -10.4 -3.61398 | opp_overlap 153182 153196 CTTGTTGCTGAACAA GCTGATTT TCC AAATCAGC AACTTGTTTGGCTAA TERM 225 156655 - 156639 - H 78 -10.1 -3.35597 | overlap 156637 GTTAGTTGTCAAAGA TCGGGGC TCA ACCCCGA GTCGGCATCTAATAC TERM 226 157556 - 157537 - H 71 -9.2 -2.65808 | opp_overlap 157552, overlap 157533 157534 AGTCGTAACAAGGTA GCCCTACC GGAA GGTGGGGC TGGATCACCTCCTTT TERM 227 158353 - 158341 - H 79 -7.7 -4.2354 | GAAAGGCGAAAAGAA CCCTT GTT AAGGG AGTGAAATAGAACCT TERM 228 161066 - 161027 - H 100 -17.2 -4.84527 | opp_overlap 161028 161033, overlap 161028 161033 GTCATAGACTAAAAA GGAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTCT TTTCTCTAAAATACC TERM 229 161065 - 161028 - H 100 -20.7 -3.49993 | opp_overlap 161028 161033, overlap 161027 161033 TCATAGACTAAAAAG GAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTC TTTTCTCTAAAATAC TERM 230 161028 - 161065 + H 100 -20.7 -4.54047 | opp_overlap 161027 161028 161033, overlap 161033 TCATAGACTAAAAAG GAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTC TTTTCTCTAAAATAC TERM 231 161060 - 161033 - H 100 -19.2 -3.77111 | opp_overlap 161033 161028, overlap 161028 161027 GACTAAAAAGGAGAA GGGGGTAGCCGC TAAC GCAGCTACCCCC TTTTCTTTTCTCTAA TERM 232 161033 - 161060 + H 100 -17 -5.23292 | opp_overlap 161028 161027 161033, overlap 161028 GACTAAAAAGGAGAA GGGGGTAGCCGC TAAC GCAGCTACCCCC TTTTCTTTTCTCTAA TERM 233 162882 - 162845 - g 70 -9.3 -2.80077 | gap 1, overlap 162842 162841 TCTCGACAAAATCTA CCTACTCTTAAAGAGACG AAA CGT-TCTTTCAGAGAAGG AGTAAGAAAGGGTGC TERM 234 163181 - 163147 - g 91 -12.2 -3.51934 | opp_overlap 163146 163145 163149, overlap 163145 GGGTTGGTACAAATA CATCGGTAGCAATGGC TTA GCCATTGCCATGGATG GGTTTGGAATGTCCG tktB 161270 - 163270 + | transketolase amn 164136 - 163267 - | AMP nucleosidase TERM 235 163315 - 163344 + g 91 -7.2 -5.28831 | gap 1 AGAAAGAGAATCATC GGCTTGCC-CAAA CTCCA TGTGCGGCAAGCC TTTTGTTTTCTTGAT efp 164392 - 164928 + | elongation factor P TERM 236 164958 - 164932 - T 91 -7.2 -5.50723 | opp_overlap 164938, overlap 164933 164935 GTATCAAAATAAAAA TTAGAAGGGGCA TTA CGCCCCTTCTTC AAGAAGGCGTTCCGC TERM 237 164957 - 164933 - T 85 -10.7 -3.88807 | opp_overlap 164938, overlap 164932 164935 TATCAAAATAAAAAT TAGAAGGGGCA TTA CGCCCCTTCTT CAAGAAGGCGTTCCG TERM 238 164955 - 164935 - T 100 -13.3 -3.50051 | opp_overlap 164938, overlap 164933 164932 TCAAAATAAAAATTA GAAGGGGCA TTA CGCCCCTTC TTCAAGAAGGCGTTC TERM 239 164938 - 164952 + T 73 -8.5 -3.61398 | opp_overlap 164935 164933 164932 AAATAAAAATTAGAA GGGGC ATTAC GCCCC TTCTTCAAGAAGGCG TERM 240 164974 - 164964 - T 73 -8.2 -3.61398 | opp_overlap 164963 CCCCTTCTTCAAGAA GGCG TTC CGCC ACTTTCCGAAATAAT CTLon_0122 165168 - 164944 - | hypothetical protein CTLon_0123 166087 - 165215 - | hypothetical protein groEL 167706 - 166168 - | 60 kDa chaperonin GroEL TERM 241 167005 - 167016 + g 75 -3 -5.08824 | GATCAGAGGAGTTTG TTCT TCGG AGAA TTTTTTGAGTAAGGG TERM 242 167595 - 167585 - G 74 -4 -5.00616 | CTCCCTTTGAAAAAA TCTT TCG AAGA AGAGGAGTACGCGGG TERM 243 168172 - 168185 + G 70 -5.3 -4.47456 | CGCCCTATTTTGTTG GAAGA ATGG TCTTC TTTGTTATTAGGTAT TERM 244 168860 - 168870 + G 75 -2.4 -5.38839 | opp_overlap 168856 CAAAAAAGAATTCTG CAGC AGA GCGG TTTTCTTTTTCTATG TERM 245 169455 - 169478 + G 76 -7.6 -4.19336 | gap 1, opp_overlap 169454 TGTGTTGTTAAAAGG GTCTCGTAGTT TAG AACTA-GAGAC TTTATTACCATGCTT murF 168154 - 169506 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 246 169815 - 169838 + G 89 -3.8 -5.63236 | opp_overlap 169816, overlap 169816 ATAAAGACAAAGCAT ATATCCCTAC AGCT GGAGGGATAG TTTTTGTTTTTGCAT TERM 247 169816 - 169837 + G 72 -7.3 -3.95502 | opp_overlap 169816, overlap 169815 TAAAGACAAAGCATA TATCCCTAC AGCT GGAGGGATA GTTTTTGTTTTTGCA TERM 248 170303 - 170325 + G 95 -11.4 -3.76383 | TTCATTTGTTGTGTT CTTCTAGCTA CCT TAGCTGGAAG TTGTCTTGGATTTTT mraY 169652 - 170662 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 249 171052 - 171089 + G 80 -9.9 -3.71075 | overlap 171051 TTATTCAAACGGTCT GGGATTCCTGCTTTCGC TATG GGGAATGTAGGAATTCC TATTTTAGATGGTAT TERM 250 171399 - 171433 + G 79 -10.9 -3.16683 | gap 1, opp_overlap 171388 171408, overlap 171403 AAAACCATTGTACTT GCATGATAAGCACAAC TACT GTTGTGCCTATC-TGC TTGCTAAAATAGAAT TERM 251 171403 - 171430 + G 81 -11.4 -2.78547 | opp_overlap 171388 171408, overlap 171399 CCATTGTACTTGCAT GATAAGCACAAC TACT GTTGTGCCTATC TGCTTGCTAAAATAG TERM 252 171425 - 171408 - g 78 -9.9 -3.41051 | opp_overlap 171403 171399, overlap 171388 GTACTTGCATGATAA GCACAAC TACT GTTGTGC CTATCTGCTTGCTAA TERM 253 171654 - 171692 + G 75 -10.2 -2.82015 | TAAGGGATGCACGTT CTCTTCGCTTCTTCCCGC TTT GCGAAAAGCTGCGAAGAG TGTAGTCGCTATGGG murD 170674 - 171924 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase nlpD 171921 - 172658 + | muramidase TERM 254 172691 - 172707 + GF 79 -3 -5.36441 | GAAATGGTTCCTGAT TTCCTG TTTAT TAGGAA TTTTTTCTCTCGGAC TERM 255 172767 - 172792 + GF 74 -9.9 -2.78463 | gap 1, overlap 172754 GAGGTTTTGGATCGA GCTTTGTCGTGT AGT ACAC-ACAAAGC TCTGATCCGGCAGAT TERM 256 173546 - 173556 + GF 76 -6.8 -4.52589 | GTATGTCATTGCAAT GCGA GCC TCGC TTTTATCTGGAGCGG ftsW 172674 - 173831 + | cell division protein murG 173740 - 174798 + | N-acetylglucosaminyl transferase TERM 257 176988 - 176998 + G 79 -3.2 -5.28176 | TAGGGAAAGGGTCGT GTCG TAT TGAC TTTTTTGTAGATGAA murC 174803 - 177214 + | UDP-N-acetylmuramate--alanine ligase CTLon_0132 177670 - 177251 - | hypothetical protein TERM 258 177431 - 177456 + g 84 -2.5 -5.626 | overlap 177433 TGTGAGAGAGCCGTT TTCAGGTTGAG CAAG CTCAACAAGGA TTTTTTTCTGCAATC CTLon_0133 178634 - 177828 - | hypothetical protein TERM 259 178187 - 178164 - G 77 -3.8 -5.12617 | opp_overlap 178164 TAAGGATTGAAAAAA GGGCAAAGCT GGGA AGGTTTGTCC TTCATAACCTATGAA rbsV 178788 - 179120 + | anti-sigma F factor antagonist TERM 260 179218 - 179240 + G 91 -12.8 -2.78384 | TTAAGCGGACAGTGA TTCTGTTGGC TGG GCCAACAGGA TCTGGTAAAACAGCG miaA 179124 - 180143 + | tRNA delta(2)-isopentenylpyrophosphate transferase CTLon_0136 181200 - 180148 - | hypothetical protein TERM 261 180410 - 180393 - G 100 -8.5 -5.49729 | AATTATCTAAAAAAA TTCTTGC CACC GCAAGAA TGCGGTAATAGAGTT TERM 262 181878 - 181910 + G 71 -10.1 -2.6518 | opp_overlap 181876, overlap 181877 CGCTGGTTAGGAAGT TTCTCTTCTCAAATT ATC AATTTGAGAAAAGAG CTTATGAATATTAGC CTLon_0137 181290 - 182972 + | hypothetical protein TERM 263 183001 - 183029 + F 100 -9 -5.87688 | opp_overlap 183000 183001 AGGAGTAAAAACAAG TAGTCAAAAGGT GAAGA GCCTTTTGGCTA TTTTTTTTAAATTGT CTLon_0138 183426 - 183785 + | hypothetical protein fabF 183796 - 185052 + | 3-oxoacyl-(acyl carrier protein) synthase II CTLon_0140 185049 - 185501 + | hypothetical protein TERM 264 185531 - 185568 + T 100 -12.8 -5.01546 | opp_overlap 185535, overlap 185536 AAAAAAACTTGGTTA GGAAGGGCCGTTGTGG AATCTC CCACAACAGCCTTTTC TTTTTCTGTCGATTT TERM 265 185564 - 185535 - T 78 -10.7 -3.1506 | opp_overlap 185531 185536 AAACTTGGTTAGGAA GGGCCGTTGTGGA ATCT CCCACAACAGCCT TTTCTTTTTCTGTCG TERM 266 185536 - 185563 + T 100 -11.3 -5.38839 | opp_overlap 185535, overlap 185531 AACTTGGTTAGGAAG GGCCGTTGTGG AATCTC CCACAACAGCC TTTTCTTTTTCTGTC ppa 186211 - 185582 - | inorganic pyrophosphatase ldh 186459 - 187499 + | leucine dehydrogenase cysQ 188493 - 187465 - | 3'(2'),5'-bisphosphate nucleotidase TERM 267 187665 - 187652 - G 70 -3.8 -4.91109 | overlap 187653 187656 TTTGGATTAGAAAAA GGGA GAGGAT TCCC CGATATATCTGTAAC TERM 268 188711 - 188691 - H 86 -9.9 -4.30719 | overlap 188703 CTTTTTGATAATAAA TGAAAAGAA TAG TTCTTTTCA GAATGCAAACCTGTT CTLon_0144 188791 - 189552 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 269 190850 - 190860 + G 74 -6.8 -4.4017 | opp_overlap 190850 TTATTCTTAAAAGGA CGAC TCA GTCG TTTTGTGAAGATTGG aas 189560 - 191173 + | long chain fatty acid--[acyl-carrier-protein] ligase TERM 270 191359 - 191416 + GT 93 -12.1 -3.73775 | gap 1, opp_overlap 191411 AGGTTATGGAGGTTC GCGCGCTATTTTAGGCTCTTCCTCG-CT GTT AGATGGGGTAGAGCATCAAATAGCGCAC TTTCATGGCGCTCCA TERM 271 192038 - 192018 - gT 70 -8.3 -3.31799 | opp_overlap 192017 192020 GAGAACTTGCGAGAA CACGATTAC GTC GTATTCGTG ACTATTTTGCTCAAA priA 194529 - 192268 - | primosome assembly protein PriA bioF 191216 - 192349 + | 8-amino-7-oxononanoate synthase TERM 272 194001 - 194012 + gT 74 -4.4 -4.91511 | CATCCAAAGTTTTTG CAGA TACC TCTG TTTTTCTCATCAGCT CTLon_0148 195173 - 194484 - | hypothetical protein TERM 273 194801 - 194780 - GH 89 -7.4 -4.9448 | opp_overlap 194783 AGCGATTAAAGAAAA GAATCTCA TGTTCC TGAGATTC ATGGACAAAAATGCC CTLon_0149 195329 - 195823 + | protein disulfide isomerase TERM 274 195897 - 195860 - f 76 -4.1 -5.2015 | opp_overlap 195831 195883 195885 195889, overlap 195889 TTAATAAGAGAAAAA CGTGTTCCCATTCTCGG ATTT CTAAGAAAGAGAAAACG ATCCAGTTTTCTCTT TERM 275 195883 - 195916 + F 85 -9.8 -4.07568 | opp_overlap 195860 195889, overlap 195885 195889 CATTCTCGGATTTCT AAGAAAGAGAAAAC GATCCA GTTTTCTCTTTCTA TTTTGGAGAAAGCAA TERM 276 195885 - 195914 + F 90 -12.4 -3.63744 | opp_overlap 195860 195889, overlap 195883 195889 TTCTCGGATTTCTAA GAAAGAGAAAAC GATCCA GTTTTCTCTTTC TATTTTGGAGAAAGC TERM 277 195889 - 195910 + F 78 -7.4 -4.45168 | opp_overlap 195860 195889, overlap 195885 195883 CGGATTTCTAAGAAA GAGAAAAC GATCCA GTTTTCTC TTTCTATTTTGGAGA TERM 278 195910 - 195889 - f 73 -7.4 -4.16842 | opp_overlap 195885 195883 195889, overlap 195860 CGGATTTCTAAGAAA GAGAAAAC GATCCA GTTTTCTC TTTCTATTTTGGAGA TERM 279 196829 - 196817 - g 77 -4.8 -5.00884 | ATTGCTTTGAAAAAA CTCC TTGTT GGAG GAATGTCCCGAGTTT TERM 280 197582 - 197593 + G 70 -3.6 -4.76312 | overlap 197574 GACGCTGCATCCATT CGGG ATGT CCTG TTTTTCCCTGTTATG lysS 196055 - 197635 + | lysyl-tRNA synthetase TERM 281 197653 - 197630 - T 85 -2.5 -5.69379 | opp_overlap 197647 ATAGAAGCAAAAAAA GATTAAAGT TTTTTC ACTTTCATC CCGGTTTTGCCATCT cysS 199125 - 197632 - | cysteinyl-tRNA synthetase TERM 282 198109 - 198088 - G 73 -5.9 -4.56367 | CAGCCTACAAATAAA GTCTCTTAA GCGT TTAAGTGAC TGGCGAGAAGCATGC TERM 283 198450 - 198467 + g 71 -8.5 -3.53563 | opp_overlap 198465 AATGCCATCCCGGGC GTCCTTT CCCA AAAGGAC TTTCCCAAAAAATCT CTLon_0152 199378 - 200427 + | hypothetical protein TERM 284 200456 - 200484 + T 100 -11.1 -5.82388 | ATCTAGTATTCCTCC CCATTCCATGC CTCTATA GCGTGGAATGG TTTTTTTTAGGATTT rnpA 200867 - 200505 - | ribonuclease P rnpA 201017 - 200880 - | 50S ribosomal protein L34 TERM 285 201321 - 201340 + H 71 -3.6 -4.94972 | AGAGAGCAGAGATCA CTGTAAGA AAAC TTTTACGG TTTTTAGTTGTGCTG rpmJ 201494 - 201631 + | 50S ribosomal protein L36 TERM 286 201796 - 201782 - g 74 -6.4 -4.46976 | AGGAAGAAAGAGAAA GAGCTC GGG AAGCTC TCAATAAAATGAGAA rpsN 201655 - 201960 + | 30S ribosomal protein S14 TERM 287 201973 - 201988 + T 100 -10.4 -5.56568 | TAGGACTTGTGTTGA GCCCCT TGAA AGGGGC TTTTTTTACTCGTCT CTLon_0157 202494 - 201994 - | hypothetical protein TERM 288 202083 - 202096 + g 76 -8.1 -4.08394 | overlap 202092 ATACCCATAATTCTT GGGGA TCGA TCCCC TTTTCAGGAGAGTGT CTLon_0158 202867 - 202616 - | putative integral membrane protein CTLon_0159 203147 - 203641 + | hypothetical protein TERM 289 203664 - 203639 - T 76 -9.1 -3.78234 | opp_overlap 203644, overlap 203644 ATTCAAACTGAAGAA TAAAAGGCTCT GTAT AGAGCCTTTTT TTTTGGTTAGGATCC TERM 290 203644 - 203659 + T 100 -9 -6.23209 | opp_overlap 203639 203644 AACTGAAGAATAAAA GGCTCT GTAT AGAGCC TTTTTTTTTGGTTAG TERM 291 203659 - 203644 - T 91 -9 -4.91987 | opp_overlap 203644, overlap 203639 AACTGAAGAATAAAA GGCTCT GTAT AGAGCC TTTTTTTTTGGTTAG uvrC 205427 - 203688 - | excinuclease ABC subunit C TERM 292 205329 - 205380 + g 71 -4.7 -4.67234 | gap 1, overlap 205326 205334 TAAAAAAGGGATGCG TTCACGGGAATCGCCTTTCTTT TGAAGATAT GAAGAAAGTCGATTCC-GTAAA TTTTTCGCCTTACCT mutS 207971 - 205509 - | DNA mismatch repair protein TERM 293 206398 - 206365 - G 83 -11.9 -2.78816 | opp_overlap 206363 206362, overlap 206367 206371 206375 CGATGTTCTACGATA TAGAAACAAAGCTCC TTAA AGAGCTTGGTTTCTA AAGTTTGTAGCTTAT TERM 294 206396 - 206367 - G 73 -10.1 -2.94218 | opp_overlap 206363 206362, overlap 206365 206371 206375 ATGTTCTACGATATA GAAACAAAGCTCC TTAA AGAGCTTGGTTTC TAAAGTTTGTAGCTT TERM 295 206388 - 206375 - G 71 -4.5 -4.65722 | opp_overlap 206363 206362, overlap 206371 206367 206365 CGATATAGAAACAAA GCTCC TTAA AGAGC TTGGTTTCTAAAGTT TERM 296 207415 - 207438 + g 87 -4.6 -5.52986 | ATACGTAAATGCTGT TGGAGTTGTT TAAT AACAGCTGCA TTTTTTTGATAAAAT dnaG 208304 - 210091 + | DNA primase CTLon_0164 210176 - 210463 + | hypothetical protein TERM 297 210486 - 210503 + F 100 -7.7 -6.02546 | opp_overlap 210486 TCAAGAGTCTATAGA CTGGGAA TTTC TTCCCGG TTTTTTTTAATTTAA CTLon_0165 210590 - 211081 + | hypothetical protein TERM 298 211133 - 211106 - T 100 -11.4 -5.93809 | opp_overlap 211107, overlap 211107 CCTTTATAAAAAAAA GGCCTTCTCTTT GTGA AAAGAGAAGGCT TTCTTTTTGTCTGGA TERM 299 211132 - 211107 - T 100 -14.9 -4.15201 | opp_overlap 211107, overlap 211106 CTTTATAAAAAAAAG GCCTTCTCTTT GTGA AAAGAGAAGGC TTTCTTTTTGTCTGG TERM 300 211107 - 211132 + T 100 -14.9 -5.01422 | opp_overlap 211107 211106 CTTTATAAAAAAAAG GCCTTCTCTTT GTGA AAAGAGAAGGC TTTCTTTTTGTCTGG glyQ 214175 - 211164 - | glycyl-tRNA synthetase TERM 301 214276 - 214257 - H 75 -9.4 -3.28712 | opp_overlap 214256 214260, overlap 214260 CCGGGCTCTGCAGAA CAAGGATT AAGA AATCCTTG ATATTCCTAGAGGAA TERM 302 214839 - 214811 - g 86 -10.4 -3.89055 | opp_overlap 214811 ATATATTGCGAGAAA GTTTTCCCAGGT AACAG ATCTGGGAAAAC TTCTAGATCCCATGG TERM 303 214811 - 214839 + G 95 -12.6 -3.36327 | opp_overlap 214811 ATATATTGCGAGAAA GTTTTCCCAGGT AACAG ATCTGGGAAAAC TTCTAGATCCCATGG TERM 304 215018 - 215051 + G 74 -4.7 -4.86773 | TGCTAGGATGAGTGG GAAGTTAAAAGCT ATTCTTCA AGCTATTAGCTTC TTTTTCATCATTTTC pgsA 214629 - 215237 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 305 215234 - 215213 - T 100 -14.5 -5.00895 | CTTATTACAGAAAAA TGACTCGCC GGAT GGCGAGTCA TAGGGAAGTTTATTG glgA 216668 - 215244 - | glycogen synthase TERM 306 215553 - 215537 - G 76 -9.5 -3.56109 | CAAACATAGAAGGAA TGCAGAT CAT ATCTGCA GCGGCGAAAATTTGT rplY 217245 - 217802 + | 50S ribosomal protein L25/general stress protein Ctc pth 217810 - 218349 + | peptidyl-tRNA hydrolase TERM 307 218761 - 218747 - g 73 -8.6 -3.6959 | opp_overlap 218747 218746 AGAGTATCATTTAAA CGAAGA TCT TCTTCG ATTCATGACTCTTAA rpsF 218487 - 218825 + | 30S ribosomal protein S6 rpsR 218842 - 219087 + | 30S ribosomal protein S18 rplI 219108 - 219611 + | 50S ribosomal protein L9 TERM 308 219623 - 219655 + F 100 -3.4 -6.47325 | gap 1, overlap 219623 219626 219626 TTAAACTTTTTGTTT GTTG-GGGGAAGAGA TTCT TTTCTTCCCCACCTC TTTTTTTTATTTTTT TERM 309 219623 - 219653 + F 74 -5.5 -4.77908 | gap 1, overlap 219623 219626 219626 TTAAACTTTTTGTTT GTTGGGGGAAGAGA TTCT TTTCTTCCCC-ACC TCTTTTTTTTATTTT TERM 310 219626 - 219652 + F 71 -8.1 -3.41254 | gap 1, overlap 219626 219623 219623 AACTTTTTGTTTGTT G-GGGGAAGAGA TTCT TTTCTTCCCCAC CTCTTTTTTTTATTT TERM 311 219974 - 219992 + G 77 -8.2 -4.05788 | opp_overlap 219977, overlap 219977 TGCAGGAGGGAGTAG TAATGCAG CAA CTGCATTG TTTGCTTTAAACCAA TERM 312 219977 - 219989 + G 76 -7.7 -4.15396 | opp_overlap 219977, overlap 219974 AGGAGGGAGTAGTAA TGCAG CAA CTGCA TTGTTTGCTTTAAAC ispE 219675 - 220541 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 313 220810 - 220792 - T 75 -6.7 -4.50122 | opp_overlap 220791, overlap 220809 CGATAGAAAAAAACA GCTCTGC CCCCT ACAGAGC CCTTTTAAAGGGGGA CTLon_0175 222196 - 220844 - | putative integral membrane protein TERM 314 222361 - 222321 - R 83 -11.3 -3.39742 | opp_overlap 222319, overlap 222319 222315 222322 CATAAAGAAGCAAGA GGTTTTTCTCGGATGAAGA ACC TCTTCATCCGAGAAAATGT AAGTACAAGAATGTT TERM 315 222360 - 222322 - R 100 -14.8 -2.62761 | opp_overlap 222319, overlap 222319 222315 222321 ATAAAGAAGCAAGAG GTTTTTCTCGGATGAAGA ACC TCTTCATCCGAGAAAATG TAAGTACAAGAATGT ptr 225245 - 222375 - | exported insulinase/protease TERM 316 224283 - 224273 - G 70 -5.4 -4.53648 | TAGATAAAATAGAAA TCAG TGA CTGA GCCCATCCTTGTAAG plsB 226298 - 225297 - | glycerol-3-phosphate acyltransferase TERM 317 225417 - 225407 - G 76 -6.8 -4.44667 | CTTCGGAAGAACAAA GCTC ATC GAGC AACAGTTCGTCTCCA TERM 318 226161 - 226184 + g 75 -3.1 -5.08824 | gap 1, opp_overlap 226162, overlap 226162 226164 CCATTGAGAACAAAG AGCTTCCGCT TTCTC AGCGG-AGCA TTTTTTAGATGCAGC cafE 227849 - 226311 - | ribonuclease E TERM 319 227595 - 227612 + g 78 -4.1 -5.11033 | opp_overlap 227594, overlap 227596 227610 TGCATCAGAATCTAT ATCGAAC ATCT GTTCGAA TTTTTTAGAATTCTC TERM 320 227596 - 227611 + g 70 -7.6 -3.65535 | opp_overlap 227594, overlap 227595 227610 GCATCAGAATCTATA TCGAAC ATCT GTTCGA ATTTTTTAGAATTCT TERM 321 227987 - 227963 - H 70 -2.9 -5.1101 | opp_overlap 227963 CGATTAGGTAAAAAA TTCTACAAAAA TGC TTGTTGTTGAA TAGTTTAATTTAGAA TERM 322 228714 - 228700 - g 75 -5.8 -4.74132 | AGAGTTTATCAAAAA CTTTTT GAA AAAAAG GCGGGACGTAACTCT CTLon_0179 228413 - 228733 + | hypothetical protein TERM 323 228869 - 228907 + GF 91 -8.2 -4.68593 | overlap 228838 228836 228834 TGTCCCTTGTCTGTC GCGGTATATTTTGGGGAG TCG TTCCACAAAATGCATCGC TTTTTGAATCCTGGG CTLon_0180 228673 - 228999 + | hypothetical protein rpmF 228983 - 229162 + | 50S ribosomal protein L32 TERM 324 229380 - 229339 - g 76 -9.3 -3.46824 | opp_overlap 229339 229341 CCACCAATTAATGAA TTCTCCGCTGTCTCGTTCC GTTC GGATCGTGACCGCAGAGGA TTTTGTCTCTATGGA TERM 325 229339 - 229380 + G 100 -9.3 -4.64844 | opp_overlap 229339, overlap 229341 CCACCAATTAATGAA TTCTCCGCTGTCTCGTTCC GTTC GGATCGTGACCGCAGAGGA TTTTGTCTCTATGGA TERM 326 229341 - 229378 + G 71 -9.7 -2.62187 | opp_overlap 229339, overlap 229339 ACCAATTAATGAATT CTCCGCTGTCTCGTTCC GTTC GGATCGTGACCGCAGAG GATTTTGTCTCTATG plsX 229184 - 230149 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 327 230771 - 230793 + G 95 -7.8 -5.1615 | ACGAGCAGCAACCTT GATTCTCC TCGTGAC GGAGAATC TTTTTTAGGTATTGC TERM 328 231519 - 231502 - g 87 -8.5 -4.57073 | opp_overlap 231491 CATTTTTGGCAAAAA TTGTCAG ATTT CTGACAA CGAGGGGCCAGTGGT TERM 329 231946 - 231956 + G 73 -5.4 -4.64861 | opp_overlap 231946 GGAAATTACCAATAA TTCC GGA GGAA TTTCTTTTACAGGAA TERM 330 232816 - 232826 + G 79 -6.8 -4.63542 | CTTCTCTGATATTTA TGGC GGC GCCA TTTTTACAGGTTCTC TERM 331 234497 - 234516 + G 73 -3.5 -5.04325 | overlap 234500 GAATACCGAAGTTTA GTTGGTC CTGTGA GACCTAC TTTTTATGCTTTGCA TERM 332 234630 - 234593 - g 84 -9.9 -3.88232 | opp_overlap 234604 GGCTTTACAGAACAA GGAAGAGAAGCGCGTTC TTTT GAAGACGCTTCCCTTAC CAATATCACCATTCC pmpD 230369 - 234961 + | polymorphic outer membrane protein TERM 333 234993 - 235020 + F 100 -12.9 -6.11243 | ACAGCAACCATTCTA TCCCTAATCTC CCATCA GAGATTAGGGA TTTTTTTTATTAGCT TERM 334 235051 - 235068 + F 100 -2.1 -6.11644 | gap 1 AGTCAATAAGTTGAG GAGAAGAT AGA ATCTT-TC TTTTTTTTTCGCTAG TERM 335 235937 - 235921 - g 82 -2.2 -5.61881 | opp_overlap 235933, overlap 235923 235925 235933 TTCGAAAAAGAAAAA CATGGT ATCAA ACCAGG AAGACGTGGTTCGAT CTLon_0184 235162 - 235956 + | hypothetical protein TERM 336 235964 - 235978 + T 71 -4.3 -4.8487 | opp_overlap 235964 CGATATAGAAGAAGA CGAAT GTCTA ATTCG TTGTTTTTTTAATAG TERM 337 235994 - 236024 + T 91 -3.3 -5.86332 | gap 1, opp_overlap 235996, overlap 235996 TTGTTTTTTTAATAG AAGCCTGGCCTGTA GTAA TA-AGACCAGGCTA TTTTTTTTGGATTCG TERM 338 235996 - 236022 + T 74 -5.9 -4.56715 | gap 1, opp_overlap 235996, overlap 235994 GTTTTTTTAATAGAA GCCTGGCCTGTA GTAA TA-AGACCAGGC TATTTTTTTTGGATT TERM 339 236022 - 235996 - T 73 -8.1 -3.65812 | gap 1, opp_overlap 235996 235994 GTTTTTTTAATAGAA GCCTGGCCTGTA GTAA TA-AGACCAGGC TATTTTTTTTGGATT CTLon_0185 236339 - 236040 - | hypothetical protein CTLon_0186 236722 - 236360 - | hypothetical protein TERM 340 236523 - 236533 + g 70 -2.6 -5.03314 | opp_overlap 236523 TTCTTGCGCAACCAA TTTA GAA TAAA TTTTTTGCCAATCAA TERM 341 236746 - 236736 - H 100 -2.6 -6.23317 | opp_overlap 236736 ATAAAAACAAAAAAA TAAA TCA TTTA GTTTTCGATAATTAT TERM 342 237227 - 237196 - g 72 -7.2 -4.04206 | opp_overlap 237186, overlap 237197 CTATGGGGATAGAAA CCCTGATGTTGGGA CCTA TCCCTACCCCAGGA GTGGCATTTATTACT CTLon_0187 236967 - 238343 + | phosphoglucosamine mutase TERM 343 239830 - 239813 - g 71 -4.2 -4.86613 | TAAAATTAAAAGAAA TTGCTT ACGTAG AAGCAA ATGCTTACCCTGCAG glmS 238354 - 240174 + | D-fructose-6-phosphate amidotransferase TERM 344 240164 - 240183 + F 89 -6.5 -5.47431 | overlap 240169 TGGCTAAATCTGTTA CTGTAGA GTAAAA TCTACAG TTTTTTCTCTCTTGA TERM 345 240674 - 240702 + G 83 -11.9 -2.6063 | overlap 240669 TAGTATTTTTTGCTT TGTTTTCCCCATT ATT AATGGCGAAAACA TCCATTATCGATCAA TERM 346 240989 - 241003 + G 71 -5 -4.67607 | GGGAAGCCATTGTGT TAGGAG CCG TTCCTA TTTCTTTCTTAGAAC tyrP 240277 - 241473 + | tyrosine-specific transport protein TERM 347 241495 - 241524 + F 85 -10.7 -4.03413 | CACTTCAAGTCTCAA GCTCGCATTCAGG ATTT CCTTTATGCGAGC TTTCTGTAAACAGAT TERM 348 242568 - 242590 + G 80 -6.3 -4.78157 | GATATTTTTAAATGG GATGCTCGT AAGAA ACGGGTATC TTTGTTCTTTTTAGT CTLon_0190 241656 - 242849 + | tyrosine-specific transport protein CTLon_0191 242891 - 243607 + | putative membrane transport protein TERM 349 243669 - 243643 - T 100 -13.2 -5.86061 | opp_overlap 243643 TTCTAGGAAAAAAAA GAGGTATTTAGA GTT CCTAAATACCTC TTTTTATGGGTGAAG TERM 350 243643 - 243669 + T 100 -12.5 -4.87665 | opp_overlap 243643 TTCTAGGAAAAAAAA GAGGTATTTAG AGTTC CTAAATACCTC TTTTTATGGGTGAAG ftsY 244558 - 243704 - | cell division protein TERM 351 244388 - 244367 - G 71 -8.8 -3.32066 | opp_overlap 244371, overlap 244357 244371 AATAATCTTTGATAA GAAAGAGC GAATAA GCTCTTTC ACTGCCCGTTCATCA TERM 352 245060 - 245044 - g 93 -10.1 -4.4017 | opp_overlap 245047 GGAAGTCGCAGAAAA GCAGCCG GAT CAGCTGC TTAAAATGACACTAC sucC 244628 - 245788 + | succinyl-CoA synthetase subunit beta sucD 245803 - 246678 + | succinyl-CoA synthetase subunit alpha TERM 353 248117 - 248168 + G 84 -10.8 -3.66784 | gap 1 GGGATTCTGGTAGTT GCTGTGGAGGCAGGCTCGCCTGCAG CTT CTGCAGGCGTCGCT-CCTGGACAGC TTATCTTAGCGGTGA htrA 246818 - 248311 + | serine protease TERM 354 248348 - 248365 + F 100 -11.3 -6.63964 | AGCTAGTCTAGTATG GGGACTC AATC GAGTCCC TTTTTTTTTTTAATA TERM 355 249397 - 249411 + G 75 -8.6 -3.79071 | overlap 249392 TTCAATTTTTGATCA GCAAGA TCT TCTTGC TTTACATGTTCTGGA TERM 356 250383 - 250347 - g 81 -11.8 -2.52464 | opp_overlap 250339, overlap 250351 250353 TCTCTTCTCAAGCTA CAGATACTGATCGA CTCTCACCC TCGATCAGTATCCG TGGTAAGGCTTTGAT CTLon_0196 248513 - 251437 + | metalloprotease-insulinase rmuC 252734 - 251451 - | DNA recombination protein pssA 253529 - 252738 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 357 254668 - 254646 - g 72 -10 -2.89602 | opp_overlap 254649, overlap 254645 TGTGCGAGAGGAAAT CAATGCTTTG ACG CAAAACATTG TCGCGGAAATAGAAG nrdA 254164 - 257307 + | ribonucleotide-diphosphate reductase subunit alpha TERM 358 257828 - 257809 - g 76 -9.4 -3.41936 | overlap 257807 GATTAAGGCCAAAGA TGATTTCC AGAT GGAAATCA CTGGCAAGGTATTAG TERM 359 258016 - 257977 - g 81 -7.5 -4.60797 | gap 1, opp_overlap 257982, overlap 258010 CTTCCACAGACAAAA TAAGATG-ATTGGTATTG GAGAA CAATATCAATACATCTTA AGAGATGAGACAATC nrdB 257345 - 258385 + | ribonucleotide-diphosphate reductase subunit beta TERM 360 258430 - 258409 - f 86 -10.9 -4.13711 | opp_overlap 258409 TCAAAATAGGAGAAA GCCTCAACC ATAG AGTTGAGGC TTTTTTTTGTCATAC TERM 361 258409 - 258430 + F 100 -10.2 -5.9873 | opp_overlap 258409 TCAAAATAGGAGAAA GCCTCAAC CATAGA GTTGAGGC TTTTTTTTGTCATAC trmB 258645 - 259319 + | tRNA (guanine-N(7))-methyltransferase CTLon_0202 259435 - 260019 + | putative SAM-dependent methyltransferase murB 260891 - 260016 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 362 260923 - 260967 + r 100 -13.6 -3.3568 | gap 1, opp_overlap 260937, overlap 260952 AAGTTGACTGTTCAA GGGAAGCGACACAAGCCCAAG ATAT CTTGGACG-GAGTCGCTTCCC TTACTCTGTCATTCT TERM 363 260954 - 260937 - R 70 -7.7 -3.55368 | opp_overlap 260923 260952 AGGGAAGCGACACAA GCCCAAG ATAT CTTGGAC GGAGTCGCTTCCCTT nusB 261530 - 261024 - | transcription antitermination protein NusB infC 261962 - 262522 + | translation initiation factor IF-3 rpmI 262509 - 262694 + | 50S ribosomal protein L35 TERM 364 262747 - 262761 + G 72 -7.1 -4.07568 | CAGTAGCTTCTAGAT CGCGT CGTAA ACGCG TTTTAAAACAAGCAA rplT 262713 - 263084 + | 50S ribosomal protein L20 pheS 263091 - 264119 + | phenylalanyl-tRNA synthetase subunit alpha TERM 365 264170 - 264160 - f 71 -6.8 -4.07885 | overlap 264147 264165 CACCTGTCTTGAAAA CAGG AGA CCTG AAAGGGTCCGGGGGT TERM 366 264223 - 264260 + F 100 -6.3 -6.22691 | TCCTTTTTACGAGAA CCTTTTGGGGTAAGAGT TGAG GCTCTTCCTCTGAAGGG TTTTTTTTGTTCTTA TERM 367 264285 - 264309 + F 70 -3 -5.12987 | TTCTTAGTTATTTTG TTATAAGC AAAATAAGC GCTTATAA TTTCTTTTTATTTAG TERM 368 265291 - 265267 - g 70 -3.6 -4.8622 | overlap 265269 CTTTTGAATGAAAAA GATCTTCTTG ATTTA CAAGAAAAAC ATTCGAAATCACTAG CTLon_0209 264430 - 266406 + | hypothetical protein CTLon_0210 267503 - 266403 - | putative membrane transport protein CTLon_0211 268570 - 267506 - | putative membrane transport protein TERM 369 268093 - 268115 + g 82 -3.4 -5.49579 | overlap 268096 TTTTCCCACAGTGAT CTATCGCA ATGAATA TGCGATCG TTTTCTTTTTTCTGC tilS 268668 - 269633 + | tRNA(Ile)-lysidine synthase TERM 370 271540 - 271550 + G 71 -6.8 -4.12456 | overlap 271544 271547 GACAAGGCTTTGTTG CGTC CAG GACG TTTTGACCGTCGTGT TERM 371 271876 - 271844 - g 95 -5.5 -5.80817 | overlap 271849 CTCAAGAGAAAAAAA CAACGGCATACCACG AGT CAGGGCATGCTATTG TAGGGCTTTGTGTTG ftsH 269794 - 272535 + | cell division protein TERM 372 272558 - 272581 + T 100 -12.5 -6.06529 | opp_overlap 272560 272562 TCTGGAGGTTTAGGA GAGAGCCCT TTTATT AGGGCTCTC TTTTTTTTGTGTGTG TERM 373 272579 - 272560 - T 72 -9.3 -2.79183 | opp_overlap 272558, overlap 272562 TGGAGGTTTAGGAGA GAGCCCT TTTATT AGGGCTC TCTTTTTTTTGTGTG TERM 374 272694 - 272723 + T 90 -10.9 -4.57569 | opp_overlap 272697, overlap 272697 TTACAAGACAATAAA AAAGGCTAAGAAA AACC TTTCTTAGCCTTG TTTTTCAACGAATCG TERM 375 272720 - 272697 - T 100 -12.6 -5.64304 | opp_overlap 272694 272697 CAAGACAATAAAAAA GGCTAAGAAA AACC TTTCTTAGCC TTGTTTTTCAACGAA TERM 376 272697 - 272720 + T 100 -12.6 -4.40561 | opp_overlap 272697, overlap 272694 CAAGACAATAAAAAA GGCTAAGAAA AACC TTTCTTAGCC TTGTTTTTCAACGAA pnp 274837 - 272750 - | polynucleotide phosphorylase/polyadenylase TERM 377 272835 - 272853 + g 71 -8.2 -3.42297 | overlap 272834 272838 272840 GCAAGCTTGTCTCCT TCTTTGAC AAA GTCAGAGA TATTGTCTACTTTTT TERM 378 274639 - 274613 - G 78 -8.7 -3.86897 | opp_overlap 274620 274623 274635 TTCACGTTTTAGAAA TCCTCCAGAGG TTCTT CCTGCGGAGGA AAACTTCTCTTGATA rpsO 275135 - 274866 - | 30S ribosomal protein S15 CTLon_0216 275361 - 275852 + | cytosine deaminase CTLon_0217 275884 - 276102 + | hypothetical protein CTLon_0218 276778 - 276074 - | putative integral membrane protein TERM 379 276875 - 276910 + r 80 -11.2 -3.13403 | overlap 276875 TCTCGCAAGGTTTGT TATTTGGGTGCATAGG AAAA CCTGTGCACCCCAAGA TATTAGTCCGAAGGA CTLon_0219 277431 - 276913 - | hypothetical protein TERM 380 277007 - 277029 + g 74 -4.8 -4.90013 | overlap 277026 AGAATTTTCATAGAT TCTGTGGATG TGG CGTTCACCGA TTTTTGGTTAGCTTG TERM 381 277309 - 277336 + g 73 -2.6 -5.17744 | overlap 277311 GGAGAGTTTCAGCAT GACTGCAATGCA GAAA TACATAGCAGAC TTTTTGTTAATCTCT CTLon_0220 277950 - 277444 - | hypothetical protein CTLon_0221 278457 - 277978 - | hypothetical protein TERM 382 278461 - 278477 + H 93 -4.5 -5.84011 | TGGTGCTGACATATT CTAAAAA ATT TTTTTGG TTTTTATTTTTTATT TERM 383 278713 - 278736 + H 81 -10.4 -3.40597 | overlap 278711 ATCAAGTGTTTAAGG TTTTTCGCAG AAGG CTGCGAGAAA TGTTTAAATGAAACC CTLon_0222 278774 - 278962 + | hypothetical protein TERM 384 279777 - 279763 - g 73 -5.7 -4.4261 | CTGTGAAGAGGAAAA TAGCG GGAAG CGCTA TGCTGAGGAGTGCTT TERM 385 280032 - 280010 - g 70 -2.7 -5.00616 | gap 1, opp_overlap 280014 TCCTTTCTGAAAAAA GCT-AGACGC GAAC GCTTCTTAGC TCAAGAGCAACTTTT CTLon_0223 278981 - 280198 + | putative integral membrane protein map 281030 - 280155 - | methionine aminopeptidase TERM 386 280255 - 280283 + g 74 -6.1 -4.42464 | overlap 280258 280259 CATGTTCGTGCCTCC CAATGGTTTATTG GGT CAATAAACCCTTC TTTCTTTCCGACATT TERM 387 280258 - 280280 + g 79 -7.8 -4.32678 | overlap 280255 280259 GTTCGTGCCTCCCAA TGGTTTATTG GGT CAATAAACCC TTCTTTCTTTCCGAC TERM 388 280259 - 280279 + g 84 -11.3 -3.18884 | overlap 280258 280255 TTCGTGCCTCCCAAT GGTTTATTG GGT CAATAAACC CTTCTTTCTTTCCGA CTLon_0225 281704 - 281063 - | putative integral membrane protein CTLon_0226 282320 - 281721 - | putative integral membrane protein CTLon_0227 284284 - 282515 - | ABC transporter permease TERM 389 283518 - 283539 + g 71 -2.3 -5.1925 | overlap 283514 283519 283534 GCAAAGACCCATTTT TTCCCAAAA GATC TTTTGGAAG TTTTTTCCATTCTAA TERM 390 284236 - 284205 - G 76 -6.6 -4.41177 | overlap 284199 284198 CATATAAAGCCAAAA CTCGGATAGTTTTG AGCA CAAAACTCCCAGAG TCCAATCAAGGGAAG CTLon_0229 287514 - 285811 - | sulfate transporter TERM 391 287328 - 287311 - G 73 -5.5 -4.64766 | overlap 287300 GGCAGAGGCTAAAAA GCCTCCA ATAA TTGAGGC CAATAGTCCTTGTAA CTLon_0230 287906 - 287745 - | hypothetical protein CTLon_0231 288155 - 287946 - | hypothetical protein TERM 392 288570 - 288584 + G 71 -2.1 -5.14819 | overlap 288552 GAAGCGTGCTGCTTT GGGTA TTACT TATCC TTTCTTTTTTCCTTT TERM 393 288992 - 289002 + G 74 -6.8 -4.39002 | overlap 288998 TGGAAAGCTGTATTA GGAG TTC CTCC TTTTATGGGGGCTTT CTLon_0232 288269 - 289534 + | putative membrane transport protein TERM 394 289738 - 289750 + G 70 -2.7 -5.03747 | overlap 289739 TTTGCAAGAATGCTC TTCAA GAT TTGAG TTTTTTAGAGCATTT TERM 395 289836 - 289854 + G 72 -9.6 -3.14132 | CTTGTTCAAAGCTCC GTTTCTGC ACA GCAGAAGC TTCGTACACAAGAAA TERM 396 290133 - 290152 + G 78 -10 -3.54307 | opp_overlap 290116 AATCACAAAGGGACT GCAGCTGA AGAG TCGGCTGC TTTAAGAACACTATT TERM 397 290614 - 290592 - g 83 -9.2 -3.9777 | opp_overlap 290591 GGTAAGAGCCATAAA GTAGGATTTC TAA GAATTCCTAC ATATAGTTGGCAGGA TERM 398 291090 - 291110 + G 74 -4.7 -4.81212 | overlap 291102 TCTAAACCGATTTGT GTTTTGATC AAT GAGCAAGAC TTTTCTTGTGCTGAC TERM 399 291323 - 291356 + G 76 -10.5 -3.06087 | gap 1 ACCGCATATCGATCT GCCTTTTACAGCGAAT GAT ATTCGCTATA-AAGGC TATTCCGAGTATCTT cpa 289644 - 291449 + | putative exported protease TERM 400 291476 - 291505 + F 95 -12.3 -4.03586 | gap 1, opp_overlap 291475 291474 GTTCATAGTAAGAGG GGGCTTTGCGGATT TAT AGTCC-CAAAGCCC TTGTTGTGTTTAAAC ispH 291544 - 292467 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 401 292500 - 292476 - T 95 -13 -3.63046 | opp_overlap 292474 292473 ATTATAATTAGAGAA GTCAGATGAG TTTAT CTCATCTGAC GGAATTTTTCTCACT copD2 294000 - 292519 - | hypothetical protein TERM 402 293289 - 293300 + g 71 -4.4 -4.87389 | overlap 293288 CGTGTAAGAGTCCTT CTCT CGCG AGAG TTTCTTTTTGGGCTG TERM 403 293867 - 293890 + g 81 -11.1 -3.34468 | opp_overlap 293865, overlap 293865 293863 AGGCTCCGAAGGATT GCTGCTTGA CCTGGT TCAAGCAGC TGTATTTCATTGGAG TERM 404 293898 - 293948 + g 83 -11.2 -3.52162 | overlap 293897 293902 293903 CAAGCAGCTGTATTT CATTGGAGAGGGCAGAGGCTTCTT CAC AAGAAGTCTCTGTCTGCTCTCCTG TTGCTATTGTTTGTA TERM 405 293902 - 293946 + g 100 -14.6 -3.31565 | gap 2, overlap 293898 293897 293903 CAGCTGTATTTCATT GGAGAG--GGCAGAGGCTTCTT CAC AAGAAGTCTCTGTCTGCTCTCC TGTTGCTATTGTTTG TERM 406 293903 - 293943 + g 100 -16.3 -2.81181 | overlap 293902 293898 293897 AGCTGTATTTCATTG GAGAGGGCAGAGGCTTCTT CAC AAGAAGTCTCTGTCTGCTC TCCTGTTGCTATTGT copB2 295532 - 294012 - | putative type III secretion translocator TERM 407 294154 - 294169 + g 70 -7.6 -3.6502 | opp_overlap 294153 294154, overlap 294160 TCCCAATTTATTAAT TCGATG CGTG CATCGA TTTGAGTACAGCGTG TERM 408 294170 - 294190 + g 73 -2.5 -5.12617 | overlap 294160 CGATGCGTGCATCGA TTTGAGTAC AGC GTGCACGAA TTTTTTGACTGCTTG TERM 409 294722 - 294734 + g 70 -7.7 -3.72893 | opp_overlap 294708 AGGCAGAAAAATCTG CAAGG ATA CCTTG TTTAGTGAGAAGGTA lcrH 296156 - 295560 - | type III secretion chaperone CTLon_0238 297526 - 296078 - | hypothetical protein TERM 410 296279 - 296305 + gr 73 -2.9 -5.17576 | overlap 296280 TTCCTCAGACCAGTC GTAGGAGTCTC CAATT GGGACGCCTAG TTTTTTAGCTTGATC TERM 411 296876 - 296861 - GR 91 -7.6 -4.77165 | TGTTTGAGAAGAAAA TTCCCA TTCC TGGGAA GAAAGTTGAGCCGTT TERM 412 297154 - 297142 - GR 74 -7.7 -3.87694 | overlap 297137 297136 AAGAAAATATGGAAA CCTTC CCA GAAGG TGCTGGAGGTGTTTG xerD 299289 - 298387 - | site-specific tyrosine recombinase XerD TERM 413 298635 - 298672 + g 100 -4.9 -6.50115 | AACGATCGAGTTTTT TCCCTCTGATAGACA AAAATACA TGTTCTTCAGAGGGA TTTTTTTTTTGTAGT TERM 414 299810 - 299826 + G 86 -8 -4.68512 | TATACGCGTTCTATA GCGGAT TTGCC ATCCGC TTCTTTTTATTCTGG TERM 415 299917 - 299903 - g 74 -4.3 -4.9645 | opp_overlap 299903 299898, overlap 299898 ATTAGAAGAAGAAAA GATCT TAAAG AGATC CTTCCTTTCCTATTC TERM 416 300166 - 300209 + G 78 -5.5 -5.06414 | gap 2, overlap 300168 AGGGAATGAGGCTGT TCCTTTTTCATTACTGAGAGC TGCA GCTCTCAGT-ATGC-GGAGGA TTTTTATTCAAGAGA CTLon_0240 299537 - 300526 + | hypothetical protein TERM 417 301346 - 301317 - g 80 -11.6 -2.72558 | opp_overlap 301321 301323, overlap 301321 ACAACCTTTGAATTA TAAAGAGCTAGC AGATCA GCTAGCTCTCTA TTGCAAGCAGATGCA TERM 418 301342 - 301321 - g 89 -10.2 -4.05446 | opp_overlap 301321 301323, overlap 301317 CCTTTGAATTATAAA GAGCTAGC AGATCA GCTAGCTC TCTATTGCAAGCAGA TERM 419 301321 - 301342 + G 76 -10.2 -3.06696 | opp_overlap 301321 301317, overlap 301323 CCTTTGAATTATAAA GAGCTAGC AGATCA GCTAGCTC TCTATTGCAAGCAGA TERM 420 301510 - 301491 - g 79 -10.8 -2.9039 | opp_overlap 301485, overlap 301493 ACAGTATTTTATAGA TACCATGC ATCA GCATGGTA TCGGGGTGATTTTAG glgB 300541 - 302757 + | glycogen branching enzyme CTLon_0242 303787 - 302768 - | hypothetical protein TERM 421 303873 - 303883 + r 73 -2.6 -5.24551 | opp_overlap 303873 AATCAAAAACAAACA TTTT ATA AAAA TTTTTATTAATTTCA TERM 422 303982 - 303957 - R 79 -7.5 -4.26924 | opp_overlap 303959 303961, overlap 303954 303959 AATAGTAAGAAATAA GAGCGGCCATC TCTC GATGGCCTCTT ATTTAAAAAGATTTT TERM 423 303959 - 303980 + r 83 -10.1 -3.91488 | opp_overlap 303957 303954 303959, overlap 303961 TAGTAAGAAATAAGA GCGGCCATC TCTC GATGGCCTC TTATTTAAAAAGATT TERM 424 303980 - 303959 - R 81 -10.1 -3.71448 | opp_overlap 303959 303961, overlap 303957 303954 TAGTAAGAAATAAGA GCGGCCATC TCTC GATGGCCTC TTATTTAAAAAGATT TERM 425 303961 - 303978 + r 83 -11.3 -3.54488 | opp_overlap 303959 303957 303954, overlap 303959 GTAAGAAATAAGAGC GGCCATC TCTC GATGGCC TCTTATTTAAAAAGA CTLon_0243 305225 - 304014 - | hypothetical protein TERM 426 305374 - 305396 + r 70 -8.5 -3.27022 | gap 1, opp_overlap 305377, overlap 305375 305377 TAGACGGGAAGAGGA TA-AGGGGGC CGGA GCCCCCTCTA TTACTCTAGAATCGC TERM 427 305375 - 305394 + r 74 -9.2 -3.20078 | opp_overlap 305377, overlap 305374 305377 AGACGGGAAGAGGAT AAGGGGGC CGGA GCCCCCTC TATTACTCTAGAATC TERM 428 305392 - 305377 - R 85 -11.8 -3.52341 | opp_overlap 305375 305374 305377 ACGGGAAGAGGATAA GGGGGC CGGA GCCCCC TCTATTACTCTAGAA TERM 429 305377 - 305392 + r 83 -11.8 -3.16071 | opp_overlap 305377, overlap 305375 305374 ACGGGAAGAGGATAA GGGGGC CGGA GCCCCC TCTATTACTCTAGAA pmpE 308299 - 305402 - | polymorphic outer membrane protein TERM 430 305666 - 305686 + g 73 -8.3 -3.65902 | GGCTTGAGGTCTTTG GGTAGCATT CAT AAAGCTACC TTTAACTCCAATAGG TERM 431 306936 - 306918 - G 75 -6 -4.64844 | TCGATACATAGAAAA CCATTACT GAG AGTAAGGG GTGCAGGTGTTTTTG TERM 432 308074 - 308088 + g 80 -3.5 -5.26316 | TTATTGTGACAGCAG CTCCT TCATT GGGAG TTTTTTGTAGAATAG pmpF 311400 - 308302 - | polymorphic outer membrane protein TERM 433 310534 - 310550 + g 76 -9.5 -3.54488 | opp_overlap 310531, overlap 310532 TGCATGAGTAGATTT GTTCCAT CCT ATGGAAC TATTGTTTGAAAAAA pmpG 311565 - 314606 + | polymorphic outer membrane protein TERM 434 316392 - 316377 - g 70 -2.6 -5.03314 | gap 1, overlap 316378 GTTACTGTTAAAAAA GGCTCTA CTT TAGA-CC TAGTGATGGAGAATG TERM 435 316439 - 316456 + G 86 -7.7 -4.66987 | TAATCCGCTTTTTGT GGGATCG CTGA CGATTCC TTTTGTTACCCTATC TERM 436 316590 - 316612 + G 70 -9.2 -2.81464 | opp_overlap 316588 316587 GATTGGACGAAACCT CCCTTAGC TCCTGAT GCTAAGGG TATGGTGCCTCCTAA TERM 437 316906 - 316939 + G 83 -8.9 -4.09243 | AGGCGACTGCTGCCT GCCATTACGAAAATG GGTC CATATTCGGAGTGGC TTTTGGACAACTATA pmpH 314637 - 317666 + | polymorphic outer membrane protein TERM 438 317659 - 317672 + F 79 -3.9 -5.45802 | opp_overlap 317659 TGGGCTTGAATAGAA TCTTT TAAT AAAGA TTTTTCTTTTCAGAA TERM 439 317809 - 317845 + F 93 -3.7 -5.86061 | opp_overlap 317788 CTAGAATTTTAGAGA GCAGGATCTTTTGTTTG ATT CAAACAAAAGGATGAGC TTTTTTTTCATAAAA CTLon_0248 318081 - 318677 + | hypothetical protein TERM 440 318739 - 318704 - T 100 -12.8 -5.626 | opp_overlap 318710, overlap 318705 GACGTGAGAAAAAAA TGAAAAGTCTTAGAGA AGGG CCTCTAAGACTTTTCT CAAGCTCTAAAACGC TERM 441 318738 - 318705 - T 100 -16.3 -3.96475 | opp_overlap 318710, overlap 318704 ACGTGAGAAAAAAAT GAAAAGTCTTAGAGA AGGG CCTCTAAGACTTTTC TCAAGCTCTAAAACG TERM 442 318710 - 318733 + T 89 -9.7 -4.39426 | opp_overlap 318705 318704 AGAAAAAAATGAAAA GTCTTAGAG AAGGGC CTCTAAGAC TTTTCTCAAGCTCTA pmpI 321408 - 318772 - | polymorphic outer membrane protein TERM 443 319958 - 319973 + g 75 -3.2 -5.14477 | ATAGAAAGATTAGGG GCGTGG ATAG TTACGC TTTTTTCAGTATCTA TERM 444 321466 - 321455 - H 85 -3 -5.78622 | TTATGTCAAAAAAAA GTAA TAAT TTAC AGACTTTTTCCTCAA TERM 445 321619 - 321653 + H 84 -4.6 -5.56372 | opp_overlap 321645, overlap 321620 321623 321644 321645 TTATATTTATTATCG ATTTTTTTAATTTTAA TTT TTAAAATTAAAATAAG TTTTTATTTTAGTTT TERM 446 321620 - 321652 + H 77 -8.1 -3.90163 | opp_overlap 321645, overlap 321619 321623 321644 321645 TATATTTATTATCGA TTTTTTTAATTTTAA TTT TTAAAATTAAAATAA GTTTTTATTTTAGTT TERM 447 321623 - 321649 + H 75 -9.8 -2.98404 | opp_overlap 321645, overlap 321620 321619 321644 321645 ATTTATTATCGATTT TTTTAATTTTAA TTT TTAAAATTAAAA TAAGTTTTTATTTTA CTLon_0250 321683 - 323455 + | hypothetical protein TERM 448 323526 - 323488 - T 91 -9.6 -5.14563 | opp_overlap 323489 323492 323511 323519, overlap 323492 GTTTGTAGCAAAAAA CTAAGCCCACCAAGAAGA AAT TCTCTTTGGTGGGCTTCT TTTTTTATTCAAAAA TERM 449 323489 - 323525 + T 100 -13.1 -5.7946 | opp_overlap 323488 323492, overlap 323492 323511 323519 TTTGTAGCAAAAAAC TAAGCCCACCAAGAAGA AAT TCTCTTTGGTGGGCTTC TTTTTTTATTCAAAA TERM 450 323522 - 323492 - T 100 -14.8 -3.96447 | opp_overlap 323489 323492 323511 323519, overlap 323488 GTAGCAAAAAACTAA GCCCACCAAGAAGA AAT TCTCTTTGGTGGGC TTCTTTTTTTATTCA TERM 451 323492 - 323522 + T 100 -14.8 -4.96435 | opp_overlap 323492 323488, overlap 323489 323511 323519 GTAGCAAAAAACTAA GCCCACCAAGAAGA AAT TCTCTTTGGTGGGC TTCTTTTTTTATTCA TERM 452 323519 - 323550 + T 76 -9.7 -3.07233 | gap 1, opp_overlap 323492 323488, overlap 323492 323489 323511 GAAATTCTCTTTGGT GGGC-TTCTTTTTT TATTC AAAAAAGAAAGCCC TCTTCAAGATTATAC CTLon_0251 323872 - 323600 - | hypothetical protein gatC 324073 - 324375 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 324387 - 325862 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 453 327082 - 327104 + G 73 -8.5 -3.69216 | overlap 327081 GATAGAATGGTCTCT TCTTTTGGG GAAAG CCCAGAAGA TATTTTGCGTAGACA gatB 325864 - 327330 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 454 327400 - 327360 - T 88 -9.2 -4.58242 | gap 1, opp_overlap 327363 327365, overlap 327365 327368 AAAAAAGGCATAAAA GAGAAGAACCCTCTTCATA AAAC TATGGAGAGGGTTCT-CTT TTTAAAAGGCTTTAT TERM 455 327363 - 327398 + T 100 -14.2 -4.58685 | opp_overlap 327360 327365 327368, overlap 327365 AAAGGCATAAAAGAG AAGAACCCTCTTCATA AAAC TATGGAGAGGGTTCTC TTTTTAAAAGGCTTT TERM 456 327396 - 327365 - T 100 -14.6 -4.03183 | opp_overlap 327363 327365, overlap 327360 327368 AGGCATAAAAGAGAA GAACCCTCTTCATA AAAC TATGGAGAGGGTTC TCTTTTTAAAAGGCT TERM 457 327365 - 327396 + T 100 -16.8 -3.90316 | opp_overlap 327365 327360 327368, overlap 327363 AGGCATAAAAGAGAA GAACCCTCTTCATA AAAC TATGGAGAGGGTTC TCTTTTTAAAAGGCT TERM 458 327393 - 327368 - T 85 -10.5 -4.12066 | opp_overlap 327365 327363, overlap 327365 327360 CATAAAAGAGAAGAA CCCTCTTCATA AAAC TATGGAGAGGG TTCTCTTTTTAAAAG CTLon_0255 328520 - 327429 - | hypothetical protein TERM 459 327485 - 327463 - G 89 -12 -3.25823 | opp_overlap 327446 TTCTTTTGAGATGAA TCGGAAGAGG ATT CCTCATCCGA AGATTCGCTGCTGTC TERM 460 327566 - 327580 + g 74 -7.8 -4.07568 | TGCGAGAGAGCTTTA CGACGC GGC GTGTCG TTTTCGGAGAAGAAG CTLon_0256 329217 - 328648 - | hypothetical protein CTLon_0257 329531 - 330481 + | hypothetical protein rnhC 331399 - 330497 - | ribonuclease HIII CTLon_0259 331655 - 332086 + | hypothetical protein htrB 333440 - 332073 - | lipid A biosynthesis lauroyl acyltransferase CTLon_0261 334828 - 333572 - | hypothetical protein CTLon_0262 335619 - 334825 - | putative integral membrane protein TERM 461 335027 - 335051 + g 72 -9.9 -2.74537 | overlap 335026 335019 CCGAGTGCTGCACGA TGACGCGTTCC CAT GGATCGCGACA GTTGTGTGGTATCAT TERM 462 335520 - 335500 - G 73 -7.5 -4.13421 | AAGAAAAGACAACAA GCCAAAGAC GAG GTCCATGGC GCCTGTTCCCCAGAA TERM 463 335693 - 335671 - H 85 -9.2 -4.26076 | TTATTTTCAGCAAAA CAAGAAGCTG TAC CAACTCCTTG AAACTTATTACGGAT TERM 464 336297 - 336312 + G 82 -6.8 -4.8384 | GTATGGTTGCGCTCG GCGCTC ACAT GAGTGC TTTTTGGATTGTTTG TERM 465 336809 - 336795 - g 71 -4.2 -4.81851 | overlap 336796 ACCGAAATGCAAAAA CTCCTG TTA CAGGAC TGGATCAGTTCCCTA TERM 466 336953 - 336938 - g 82 -3.3 -5.55769 | GTGTATAAGAAAAAA TCTTG GAGCTG CAAGA AGGGGATCTTATGGA TERM 467 337040 - 337052 + G 74 -7.7 -4.02253 | ACAGAGGTAGGGCGT CAACC TTG GGTTG TTTATGGCTTATTAA cydA 335894 - 337234 + | cytochrome d ubiquinol oxidase subunit I TERM 468 337465 - 337495 + G 84 -9.8 -3.85184 | overlap 337457 337485 TTTGCTGGATTGTTT GCAGGGTTCC CGACCGCTTAT GGAACCCTGC TTTCCATCTTTTACA cydB 337246 - 338307 + | cytochrome d ubiquinol oxidase subunit II TERM 469 338317 - 338348 + T 100 -14.6 -3.28712 | opp_overlap 338324, overlap 338324 TACTAATTGCAGTAG GGTACAAGGCTCTT GAAA AGGAGCCTTGTATC TTGTGCAAACAAAAG TERM 470 338324 - 338341 + T 72 -7.7 -3.72788 | opp_overlap 338324, overlap 338317 TGCAGTAGGGTACAA GGCTCTT GAAA AGGAGCC TTGTATCTTGTGCAA TERM 471 338433 - 338413 - T 79 -8.3 -4.06633 | opp_overlap 338415 GAGAAAGTTAAAGAA TAGTTGCAG CAG CTGCAGCTA GTTCGGAACGTTCCG CTLon_0265 339709 - 338405 - | hypothetical protein CTLon_0266 339918 - 340646 + | hypothetical protein CTLon_0267 340832 - 342133 + | hypothetical protein TERM 472 342141 - 342180 + T 100 -10.2 -6.04324 | opp_overlap 342146 342149, overlap 342144 342147 GGGCATAAGCAAGTT CAATAGGAGTCTTGTTAC TTAG GTAACAAGACTCTTCTTC TTTTTTCTTTTTTGC TERM 473 342144 - 342177 + T 100 -11.9 -4.97159 | opp_overlap 342146 342149, overlap 342141 342147 CATAAGCAAGTTCAA TAGGAGTCTTGTTAC TTAG GTAACAAGACTCTTC TTCTTTTTTCTTTTT TERM 474 342175 - 342146 - T 87 -12.3 -3.11178 | opp_overlap 342144 342141 342147, overlap 342149 TAAGCAAGTTCAATA GGAGTCTTGTTAC TTAG GTAACAAGACTCT TCTTCTTTTTTCTTT TERM 475 342147 - 342174 + T 100 -15.8 -4.4634 | opp_overlap 342146 342149, overlap 342144 342141 AAGCAAGTTCAATAG GAGTCTTGTTAC TTAG GTAACAAGACTC TTCTTCTTTTTTCTT TERM 476 342172 - 342149 - T 90 -12.6 -2.76046 | opp_overlap 342147 342144 342141, overlap 342146 GCAAGTTCAATAGGA GTCTTGTTAC TTAG GTAACAAGAC TCTTCTTCTTTTTTC CTLon_0268 342668 - 342195 - | hypothetical protein TERM 477 342802 - 342786 - H 70 -2.9 -5.10767 | overlap 342789 GACGTAAGAGAAAAA TCACTGA AAG CCAGAGA GACATTCTAACAGAA TERM 478 343171 - 343181 + H 71 -8.2 -3.40597 | opp_overlap 343134 343170 GGAGCTCGCGAACAC CGGG TCA CCCG TATTTAGGTAACAAC TERM 479 343648 - 343636 - H 72 -7.7 -3.72893 | overlap 343645 TACCTGTTTAGGAAA GCAGT TAA ACTGC AAACTTTGTAAGCAG TERM 480 343813 - 343826 + G 89 -3.7 -5.69262 | opp_overlap 343813 ACTTTAGACAATCGA GAGGG CTGC CCCAC TTTTTCTTTTTATGA TERM 481 344230 - 344246 + G 100 -8.7 -4.83169 | GGACTTGTGTATGAG GGGACCA AAG TGGTTCC TTTTTCTACCAAGCT TERM 482 344994 - 344975 - g 72 -9.4 -3.11302 | overlap 344974 GTAAGATGTTAAAAG CCAATGAA TCCA TTCATTGG ACTCCTGGGCATATC TERM 483 346427 - 346453 + G 76 -6.6 -4.46112 | TGCACAAAGGGCAGA TGGTTGTTTCTC TAG GAGAAGAGACCA TTTCTTTAGATAAAG TERM 484 346514 - 346526 + G 79 -7.7 -4.3898 | overlap 346510 AAGGATTTGTAGCGA GAAGC TCA GCTTC TTTTGTAGCAGTACT ileS 343714 - 346824 + | isoleucyl-tRNA synthetase TERM 485 346849 - 346869 + T 100 -6.2 -6.21477 | opp_overlap 346849 CATTGAGCAAAAAAA GAGGTCTT ATTAA AAGATCTC TTTTTTTTTGCTCTT TERM 486 346869 - 346849 - T 83 -4 -5.53991 | opp_overlap 346849 CATTGAGCAAAAAAA GAGGTCTT ATTAA AAGATCTC TTTTTTTTTGCTCTT lepB 348769 - 346883 - | signal peptidase I TERM 487 346951 - 346941 - G 86 -6.8 -4.9448 | ATGCAGTAAAGAAAA GCTC CTA GAGC CAATCCATTTACGAG TERM 488 348540 - 348552 + g 76 -2.7 -5.38951 | GTAGCTCGGAGTTTG GATTT AGG GAATC TTTTTTGTATGGCTT TERM 489 348600 - 348586 - G 100 -10 -4.72272 | opp_overlap 348584 348586 CTTGCTTAGCAAAAA GGGAAG CAT CTTCCC TATTCTGATCCAAAA TERM 490 348586 - 348600 + g 76 -10 -3.27475 | opp_overlap 348586, overlap 348584 CTTGCTTAGCAAAAA GGGAAG CAT CTTCCC TATTCTGATCCAAAA CTLon_0271 349698 - 348955 - | hypothetical protein TERM 491 349660 - 349650 - G 86 -2.6 -5.80364 | ATGCCAAGAAAAAAA TAAA AAC TTTA AGAAGGTTTTGAGGG TERM 492 349799 - 349785 - g 100 -5 -6.02546 | overlap 349787 TCAAATGAAAAAAAA CACTCA TCC TGAGTA TAGACAAGTTCTGTT TERM 493 349797 - 349787 - g 73 -5.4 -4.63519 | overlap 349785 AAATGAAAAAAAACA CTCA TCC TGAG TATAGACAAGTTCTG TERM 494 350066 - 350039 - g 70 -7.8 -3.60792 | gap 1, overlap 350052 CTCCTAAGCCTGAAA CCGTTGTGGAAGA TGT TCTTCC-CAAGGG TAAGAAGAAATCTCC rpmE 349774 - 350100 + | 50S ribosomal protein L31 type B TERM 495 350150 - 350133 - f 89 -10.5 -4.55287 | opp_overlap 350133 GTTATCTAGAGAAAA GCGGGGC GAAC ACCCCGC TTTTTTTGTTTTAAT TERM 496 350133 - 350150 + F 100 -9.8 -6.11229 | opp_overlap 350133 GTTATCTAGAGAAAA GCGGGG CGAACA CCCCGC TTTTTTTGTTTTAAT prfA 350288 - 351367 + | peptide chain release factor 1 CTLon_0274 351351 - 352223 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase ffh 352220 - 353566 + | signal recognition particle, subunit FFH/SRP54 TERM 497 353866 - 353852 - g 86 -5.7 -5.36441 | TCGTTAGACAAAAAA GACGA GCTTA TCGTC AGCGTCTTGCTGCAA rpsP 353557 - 353907 + | 30S ribosomal protein S16 TERM 498 354114 - 354128 + G 73 -10 -3.02511 | GCTTTTGATGGCAGA GCCTGT GGT ACAGGC TATTAGAAGCATAAG trmD 353923 - 354981 + | tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein rplS 355007 - 355372 + | 50S ribosomal protein L19 TERM 499 355547 - 355563 + G 76 -9.4 -3.44284 | opp_overlap 355537, overlap 355545 GACGAGGCTGGGAGA GGGCCT CTTGC AGGCCC TGTTGTTGCTGGAGC TERM 500 355739 - 355797 + G 91 -7 -5.5604 | gap 3, opp_overlap 355753 355756, overlap 355739 355754 355757 GATGAGATCAATATT TT-GGAG-GCTAC-CAAGGAGGCTATGGT TCAA GCCATAGCTTCTTTGCGAAGCACTCCCGA TTTTTTATTGGTTGA TERM 501 355739 - 355796 + G 77 -8.6 -3.91997 | gap 2, opp_overlap 355753 355756, overlap 355739 355754 355757 GATGAGATCAATATT TTGGAG-GCTAC-CAAGGAGGCTATGGT TCAA GCCATAGCTTCTTTGCGAAGCACTCCCG ATTTTTTATTGGTTG TERM 502 355754 - 355779 + G 80 -10.5 -3.53444 | opp_overlap 355753 355756, overlap 355739 355739 355757 TTGGAGGCTACCAAG GAGGCTATGGT TCAA GCCATAGCTTC TTTGCGAAGCACTCC TERM 503 355757 - 355776 + G 75 -8.6 -3.90744 | opp_overlap 355756 355753, overlap 355754 355739 355739 GAGGCTACCAAGGAG GCTATGGT TCAA GCCATAGC TTCTTTGCGAAGCAC rnhB 355436 - 356089 + | ribonuclease HII TERM 504 356126 - 356137 + G 74 -4.4 -4.98255 | AAGACGGGGTTCAAT GCTT TCCC AAGC TTTTTATCATTAGCG gmk 356080 - 356697 + | guanylate kinase CTLon_0281 356690 - 356992 + | hypothetical protein metG 356992 - 358644 + | methionyl-tRNA synthetase TERM 505 358699 - 358674 - T 79 -8.3 -4.0641 | opp_overlap 358674 CTTCACGGAGAGAAA GAGGGGTTTCA TTTA TAGAACCCCTC TTTTTTTTGTGCAAA TERM 506 358674 - 358699 + T 100 -8.3 -5.93809 | opp_overlap 358674 CTTCACGGAGAGAAA GAGGGGTTTCA TTTA TAGAACCCCTC TTTTTTTTGTGCAAA recD 361023 - 358783 - | exodeoxyribonuclease V alpha chain TERM 507 359362 - 359379 + g 89 -7.1 -5.00616 | opp_overlap 359360 359375 AAGGACTTGAATATC TTTGGTA AAGA TACCAAA TTTTTTAGGAACAAA TERM 508 360003 - 360021 + g 71 -2.4 -5.11112 | TTTGTGAAGAGCTGG CATGAAGA GCT TCTTTTTG TTTTTCTTCCAATTT CTLon_0284 362251 - 361271 - | putative membrane transport/efflux protein TERM 509 361453 - 361432 - G 73 -7.3 -4.24285 | TACATAGGTAAGAAA GAATCCATC CAAA GATGGGTTC AAAGATAAGAAGAGC TERM 510 362198 - 362177 - G 78 -8.7 -3.74872 | ATCTAGGTCAGCAAA GTTCCCTAG CATA CTAGGGATC ACGAAAACCATTCCC TERM 511 363093 - 363107 + G 91 -8.6 -4.7254 | TCGCTGATTTTCCTG GAGAGA GTT TCTCTC TTTTTAATGGGGGAT CTLon_0285 362633 - 363406 + | putative protein ligase CTLon_0286 364528 - 363371 - | hypothetical protein TERM 512 364702 - 364714 + r 71 -3.3 -5.12707 | opp_overlap 364703, overlap 364703 CGCCTCGGACAGTAT ACTCC CTT GGAGC TTTTTTAGCATTTGG CTLon_0288 365418 - 365074 - | hypothetical protein TERM 513 365109 - 365120 + g 78 -4.4 -5.16237 | TCGTTTTTTGAGAGT TCTG GAAG CAGA TTTTTTCATAACCTT dcd 366012 - 365440 - | deoxycytidine triphosphate deaminase TERM 514 366085 - 366072 - H 79 -2.4 -5.64274 | TTAGTTAGAAAAAAA GAGA TAAAAC TCTC AACACTACAGCATGT TERM 515 366133 - 366146 + G 95 -3.1 -5.96894 | CGCAACTTTTTAATG CCTTT GTGC AGAGG TTTTTTTCTTTAAAT CTLon_0290 366099 - 366251 + | hypothetical protein ruvB 366293 - 367297 + | Holliday junction DNA helicase B TERM 516 367615 - 367625 + G 74 -6.8 -4.28713 | AACCTCTTGATGGAG CAGC CTC GCTG TTTGTTAATGGTATT CTLon_0292 367299 - 368111 + | hypothetical protein TERM 517 368132 - 368177 + T 91 -13.5 -2.52464 | opp_overlap 368143, overlap 368143 TATCCTAAGAAGCTT GGTAGCAAAAAGACCCATCTC TAAT GAGCTGGGTCTTTTTTTTATC TAGATTCCAAGGAGG TERM 518 368166 - 368143 - T 91 -11 -4.72272 | opp_overlap 368143 368132 GCTTGGTAGCAAAAA GACCCATCTC TAAT GAGCTGGGTC TTTTTTTTATCTAGA TERM 519 368143 - 368166 + T 100 -11 -6.02914 | opp_overlap 368143, overlap 368132 GCTTGGTAGCAAAAA GACCCATCTC TAAT GAGCTGGGTC TTTTTTTTATCTAGA CTLon_0293 370173 - 368173 - | putative glycosyl hydrolase TERM 520 370272 - 370240 - R 95 -12.9 -3.54307 | opp_overlap 370242 370247 370266, overlap 370242 370247 AAGAGGGGGCTTAAA CACAAAAGGAAGAGA GAC CCTCTTCCTTTTGTT GTATGATAGCAAAAC TERM 521 370242 - 370270 + r 100 -14.8 -3.54475 | opp_overlap 370242 370240 370247, overlap 370247 370266 GAGGGGGCTTAAACA CAAAAGGAAGAG AGACC CTCTTCCTTTTG TTGTATGATAGCAAA TERM 522 370270 - 370242 - R 100 -15.5 -3.34715 | opp_overlap 370242 370247 370266, overlap 370240 370247 GAGGGGGCTTAAACA CAAAAGGAAGAGA GAC CCTCTTCCTTTTG TTGTATGATAGCAAA TERM 523 370247 - 370265 + r 91 -8.9 -4.85918 | opp_overlap 370247 370242 370240, overlap 370242 GGCTTAAACACAAAA GGAAGAG AGACC CTCTTCC TTTTGTTGTATGATA TERM 524 370265 - 370247 - R 90 -9.6 -4.78848 | opp_overlap 370242 370247, overlap 370242 370240 GGCTTAAACACAAAA GGAAGAGA GAC CCTCTTCC TTTTGTTGTATGATA CTLon_0294 370793 - 370290 - | putative type III secretion system chaperone TERM 525 371183 - 371201 + H 74 -5.2 -4.86731 | opp_overlap 371183 371186, overlap 371186 TTCTCTGAAGATAAA GAGGTTCC GAA GGGACGTC TTTTATTTGAAAAAG ssb 371259 - 371732 + | single-strand DNA-binding protein TERM 526 372294 - 372279 - g 77 -6.2 -4.59027 | opp_overlap 372279 AATGATCACACAAAA GAACAA AAAA TTGTTC TTCTTGGTCTAGGGA TERM 527 372934 - 372960 + G 84 -3.6 -5.42265 | overlap 372927 372936 CCATGAAGGAAGACA TGGCTGGAGCGG CTA CCGTTCTAGGAA TTTTTTCTGCTTTAG CTLon_0296 372075 - 373574 + | leucyl aminopeptidase TERM 528 373605 - 373639 + F 100 -12.5 -5.4756 | opp_overlap 373625 ATTAAATAATGTGTG TGGTTAGTTTTTAAT AAAAA GTTAAAAACTAACCA TTTTTTATTAAAGTT TERM 529 373637 - 373625 - f 70 -2.7 -5.06816 | opp_overlap 373605 AGTTTTTAATAAAAA GTTAA AAA CTAAC CATTTTTTATTAAAG hct2 373712 - 374383 + | histone-like protein 2 TERM 530 374414 - 374440 + F 100 -10.3 -5.61913 | gap 1, opp_overlap 374413 TGATTTTCTAAGTAG CCGGGAATAAGA ATTC TCTT-TTCCCGG TTTTTTGTATTTATT CTLon_0298 374538 - 375482 + | hypothetical protein CTLon_0299 375577 - 376290 + | hypothetical protein TERM 531 377223 - 377205 - g 82 -8.2 -4.33785 | AGATTTACAAAATAA TGCTCCTT CGG AAGGAACA GGTTCACATACAGGT TERM 532 377460 - 377485 + G 82 -8.3 -4.27519 | CAAAAAGGATAACGG GACTTATTCGC TTTT GCGAAGAGGTC TTTATCTTATCACCT CTLon_0300 376381 - 377853 + | hypothetical protein TERM 533 377861 - 377887 + T 100 -12.4 -4.4767 | opp_overlap 377867, overlap 377862 GTTATTAACTATTTG AGTTAAGGGAGA GAA TCTCCCTTAACA TTTTATACTGAATCG TERM 534 377862 - 377886 + T 100 -15.9 -3.2812 | opp_overlap 377867, overlap 377861 TTATTAACTATTTGA GTTAAGGGAGA GAA TCTCCCTTAAC ATTTTATACTGAATC TERM 535 377881 - 377867 - T 76 -10 -3.07291 | opp_overlap 377862 377861 AACTATTTGAGTTAA GGGAGA GAA TCTCCC TTAACATTTTATACT CTLon_0301 379579 - 377912 - | hypothetical protein TERM 536 378709 - 378723 + g 83 -9.2 -3.98913 | opp_overlap 378705 TTGGGAGATCAGTGC CCTCGG CAG CCGGGG TTATTTCGGTATCAG TERM 537 379285 - 379301 + g 78 -9.5 -3.67792 | opp_overlap 379285 379288, overlap 379288 TTTGCTTGTACATCA CAATGTC GGT GACATTG TTTCCCTGCATGTCA CTLon_0302 381312 - 379615 - | hypothetical protein TERM 538 380838 - 380828 - G 73 -5.4 -4.72272 | opp_overlap 380828 GCTTCTGAGTAAAAA GCTT CCC AAGC TGCATTGTAATCATC TERM 539 381317 - 381335 + r 91 -3.2 -5.9003 | TTTTTATTCATTTTT TCAATTAA AAA TTAATCGA TTTTTTTATTGGTTT TERM 540 381350 - 381363 + r 90 -2.5 -5.93252 | ATTTTTTTATTGGTT TTAAT ATCG ATTAA TTTTTTATTTTTAAA hemN 382504 - 381374 - | coproporphyrinogen III oxidase TERM 541 382312 - 382296 - G 80 -8.7 -3.91084 | overlap 382299 GCAGGGGGAACTAAA GAAGGAG TCC CTCCTCC AAAGAATACTGTATC TERM 542 382309 - 382299 - G 71 -6.8 -4.0825 | overlap 382296 GGGGGAACTAAAGAA GGAG TCC CTCC TCCAAAGAATACTGT TERM 543 382348 - 382372 + g 93 -12.2 -3.737 | opp_overlap 382345 382344 382348 AGTGAGAACAACGTA GAGGGGCTAG TTTTT TTAGCCCCTC TTTAATGACAGCTTC TERM 544 382372 - 382348 - G 80 -11.5 -2.69073 | opp_overlap 382348, overlap 382345 382344 AGTGAGAACAACGTA GAGGGGCTA GTTTTTT TAGCCCCTC TTTAATGACAGCTTC CTLon_0304 382940 - 382494 - | hypothetical protein TERM 545 383189 - 383199 + H 83 -5.4 -5.41143 | opp_overlap 383189 ATACTTAAAAAAAAA GCAA AGT TTGC TTTTTTTGAAAAATA TERM 546 383199 - 383189 - H 100 -5.4 -6.13 | opp_overlap 383189 ATACTTAAAAAAAAA GCAA AGT TTGC TTTTTTTGAAAAATA TERM 547 385479 - 385498 + G 76 -10.8 -2.66842 | opp_overlap 385455 385478 385482, overlap 385478 385476 TCTGCGGGAGCATAC GAAGAGAG ACCT CTCTCTTC CTCTTATCATTTTTT TERM 548 385579 - 385589 + G 71 -6.8 -4.15044 | opp_overlap 385575 385579 TTTGGAATGAAGGGA GGCT TCA AGCC TTTCTTGGAAGACGA sucA 383272 - 385983 + | alpha-ketoglutarate decarboxylase sucB 385987 - 387084 + | dihydrolipoamide acetyltransferase CTLon_0307 387844 - 387113 - | hypothetical protein gcpE 389661 - 387853 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 549 389531 - 389567 + g 70 -6 -4.2717 | gap 1 TGTCTAACCGTTCCA TCCACATCTGTGGTGGC TGTA GTCGTCATAGAT-TGGA TTTTGATGGAGTGCT TERM 550 389625 - 389638 + g 76 -6.7 -4.52857 | TTACTGGGAGGGTTT TGCGT CGAA ACGCA TTTTGTATACAGGGT TERM 551 389806 - 389769 - R 100 -13.7 -3.26947 | opp_overlap 389768 389775 389788, overlap 389775 TAAGCTTTAGATCAA TTTAAAGGAAGGTCTCC ATGG AGAAACCTCCCTTTAAA AATTGTTTATAAATT TERM 552 389800 - 389775 - R 75 -8.3 -3.79787 | opp_overlap 389775 389768 389788, overlap 389769 TTAGATCAATTTAAA GGAAGGTCTCC ATGG AGAAACCTCCC TTTAAAAATTGTTTA CTLon_0309 390904 - 389813 - | hypothetical protein fer 391259 - 390984 - | ferredoxin TERM 553 392043 - 392024 - g 82 -5 -5.40072 | opp_overlap 392025, overlap 392025 CGTCTGTTAAAAAAA GCTCTCTT TTAG AAGAGAGT GATTATTTCTCCGCC TERM 554 392042 - 392025 - g 75 -8.5 -3.83561 | opp_overlap 392025, overlap 392024 GTCTGTTAAAAAAAG CTCTCTT TTAG AAGAGAG TGATTATTTCTCCGC TERM 555 392779 - 392794 + G 71 -4 -4.89477 | CTTCCGTTAAAAATA TCAGAG AATT CTTTGA TTTTCTTATTGAGAG flhA 391441 - 393258 + | type III secretion system protein TERM 556 393596 - 393606 + G 82 -6.8 -4.91109 | AAGCAAGCGATTCGA GAGC TAT GCTC TTTTTATCATAAAAG fliA 393366 - 394127 + | RNA polymerase sigma factor sigma-28 tyrS 394286 - 395524 + | tyrosyl-tRNA synthetase TERM 557 395794 - 395822 + G 71 -9.7 -2.60161 | gap 1, opp_overlap 395790 395788 395787, overlap 395793 395791 TGATGAAATGATTGC CTCCCTGCTTCC TTTCTT GGAAG-AGGGAG ATATTCTCATTGATG TERM 558 396841 - 396852 + G 73 -5.8 -4.48713 | TGATGGATATCGTAC GGTG GATT CACC TTTATTCTTAGTGCA gnd 395534 - 396976 + | 6-phosphogluconate dehydrogenase TERM 559 397011 - 396979 - T 72 -6.3 -4.50976 | opp_overlap 396985, overlap 396982 396985 TTTTAGAGCATAAAA CAAGAAGGCCCAGTA AAC TACTGGGTCTTTTTT ATGAAGCAATATAGC TERM 560 397008 - 396982 - T 80 -8 -4.36649 | opp_overlap 396985, overlap 396979 396985 TAGAGCATAAAACAA GAAGGCCCAGTA AAC TACTGGGTCTTT TTTATGAAGCAATAT TERM 561 397005 - 396985 - T 86 -9.7 -4.27842 | opp_overlap 396985, overlap 396982 396979 AGCATAAAACAAGAA GGCCCAGTA AAC TACTGGGTC TTTTTTATGAAGCAA TERM 562 396985 - 397005 + T 100 -11.9 -5.24129 | opp_overlap 396982 396979 396985 AGCATAAAACAAGAA GGCCCAGTA AAC TACTGGGTC TTTTTTATGAAGCAA lepA 398845 - 397037 - | GTP-binding protein LepA TERM 563 397071 - 397093 + g 71 -7 -4.12947 | overlap 397090 TCAACAAACGCCGTG TTCGGAATGG ATA CTTTTCCGAA TTCTTTCATTCGTTT TERM 564 397295 - 397273 - G 100 -12.8 -3.37796 | opp_overlap 397272 397266 397273 397275 397289 GCTGAGGAGGGATAA CATCTACGAG TTT CTCGCAGATG CTTCTGCCTTTTGAT TERM 565 397273 - 397295 + g 74 -10.6 -2.71188 | opp_overlap 397273, overlap 397272 397266 397275 397289 GCTGAGGAGGGATAA CATCTACGAG TTT CTCGCAGATG CTTCTGCCTTTTGAT TERM 566 398775 - 398763 - G 76 -7.7 -4.16016 | opp_overlap 398763 398766 GTACTTTCTAACAAA CGATC TGC GATCG TAGATTTCCCGTGGT TERM 567 398974 - 399003 + r 83 -7.8 -4.61527 | opp_overlap 398977, overlap 398977 TTTGAAGACAAAAGA AAAGCCCCGTCC GAGATA GAACGGGGCTTC TTTTTAGAGAATTTT TERM 568 398977 - 399000 + r 86 -9.5 -4.40963 | opp_overlap 398977, overlap 398974 GAAGACAAAAGAAAA GCCCCGTCC GAGATA GAACGGGGC TTCTTTTTAGAGAAT TERM 569 399000 - 398977 - R 100 -11.7 -5.26907 | opp_overlap 398974 398977 GAAGACAAAAGAAAA GCCCCGTCC GAGATA GAACGGGGC TTCTTTTTAGAGAAT CTLon_0316 400617 - 399031 - | ADP,ATP carrier protein TERM 570 399115 - 399147 + g 75 -5.6 -4.63675 | gap 1 AGCTTCTGCTAATTC CTGTTCTTTAGCAGC GGAT GCAGCCAA-GAACAG TTTGTTTAGTTTAGT TERM 571 400073 - 400085 + g 72 -6.3 -4.39989 | AGAGCGTAGAAACGT TTAGC TTC GCTAA TTTTAGTAATTTCAT TERM 572 400657 - 400681 + r 84 -10.9 -3.71174 | TTTATTGTTAAGTTT TCTTTGTTGAT CAA ATCAACGAAGA TTTAAAGTATTTCTT TERM 573 400729 - 400703 - R 77 -6.7 -4.57569 | GTATTTCTTTAAAAA GTCGTGAAA AAATTTTGA TTTCACGAC TCCCTATTTCGGCTG CTLon_0317 401446 - 400970 - | hypothetical protein TERM 574 401193 - 401209 + g 70 -7.9 -3.58343 | opp_overlap 401193 CTGCGCTTTTTAGAA CCTCGAG GAG CTCGTGG TTTAGGGCTAATGGA TERM 575 401475 - 401487 + H 71 -3.4 -5.09521 | GTGGGTAGTCTAGTT CTAC AGATG GTAG TTTTTGCTTTATTAA TERM 576 401614 - 401627 + H 75 -2.4 -5.37593 | TTGCTTTTTTCGCAA TCTC ATTTTA GAGA TTTTTTGATTTGGAC TERM 577 401663 - 401652 - H 73 -3 -5.18371 | opp_overlap 401652 TTGGACAAAAGAAAA TGAA GTAC TTCA GATTGTTTTCTAAGT TERM 578 401902 - 401918 + H 74 -5.8 -4.52873 | TCCTGTTAAAAGTAT CTTCGC GATAA GCGAGG TTCTTTTTGTGGAGG TERM 579 401961 - 401973 + H 73 -2.7 -5.18726 | CAGGAGGCTTGTATC CTTTA AAA TAGAG TTTTTCTTATGACCC CTLon_0318 402107 - 403087 + | ABC transport protein, solute binding component TERM 580 403260 - 403292 + G 76 -7.9 -4.07687 | gap 1, overlap 403262 GGACTGATTCGTGCT TCTTCTGGCCAAAG CTTGTT CTTTGGTCAG-AGA TTTTCCAAGGCACAT TERM 581 403262 - 403291 + G 71 -9.4 -3.04398 | overlap 403260 ACTGATTCGTGCTTC TTCTGGCCAAAG CTTGTT CTTTGGTCAGAG ATTTTCCAAGGCACA TERM 582 403502 - 403528 + G 84 -6.5 -5.0133 | opp_overlap 403502 TCGTCAAATAGGTAA GCTCTCTGGAG GACAA CAACAGAGAGC TTTTTTAGCGCGGTC CTLon_0319 403080 - 403859 + | ABC transport protein, ATP-binding component TERM 583 404756 - 404774 + G 82 -8.2 -4.26938 | AGGGTGGATCACTCG CTATTTCC GAA GGAAATGG TTCTTATTTTCTCGA CTLon_0320 403860 - 405215 + | ABC transport protein, membrane permease TERM 584 405221 - 405235 + G 74 -10 -3.18433 | overlap 405219 TGGTTGCTAGTATTT CTCCGT ACT ACGGAG TATCATTTTTAGAGT CTLon_0321 405205 - 406161 + | ABC transport protein, membrane permease dxr 406188 - 407327 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase CTLon_0324 410306 - 409329 - | exported protein CTLon_0323 407523 - 409382 + | putative protease TERM 585 410444 - 410425 - TR 72 -5.1 -4.78266 | opp_overlap 410425, overlap 410413 AAATAAAACAACAAA GTTTGTT TCAATT AACAAAC AGTTTTTGCGAAGGA recF 411561 - 410464 - | recombination protein F TERM 586 410645 - 410627 - G 91 -11.8 -3.51924 | TGTTGATCTAGACAA GCATGGAT GTC ATCCATGC ACAGAAGAGGATGGA TERM 587 411467 - 411501 + g 81 -10.8 -3.28924 | opp_overlap 411471 411478 GTCTTTCCTTGTGCA TTAAGACCGAAGATGG AAT TCATCTCCGGTCCTAA TTCTAAACGAAGATC TERM 588 411497 - 411471 - G 95 -13.1 -3.14132 | opp_overlap 411467, overlap 411478 TTCCTTGTGCATTAA GACCGAAGATG GAATT CATCTCCGGTC CTAATTCTAAACGAA dnaN 412811 - 411561 - | DNA polymerase III subunit beta smpB 412941 - 413396 + | SsrA-binding protein apbE 414324 - 413374 - | thiamine biosynthesis lipoprotein TERM 589 413693 - 413714 + gT 77 -6.5 -4.63479 | overlap 413690 ACAGCCCAAGATCTT CCGGAAGGA TGTT TCCCTCTGG TTTTGATTTCTCCTC TERM 590 414145 - 414125 - GT 82 -8.4 -4.3534 | opp_overlap 414137 TTCCAATTATTAAAA GTTTGATC GATAT GATCAAAC ACTCGATCAATTTCC folD 415157 - 414294 - | methylenetetrahydrofolate dehydrogenase (NADP+) CTLon_0330 415670 - 415275 - | putative integral membrane protein ltuB 415995 - 416288 + | late transcription unit B protein TERM 591 416424 - 416378 - g 100 -17.6 -3.54129 | overlap 416380 416395 TATATTGGTCTCAAA GACCGCCCAGTAATAAAGATCT CCA AAATCTTTATCACTGAGCGGTT AGGCATGAGTGCCTG TERM 592 416422 - 416380 - g 100 -20.2 -3.34715 | overlap 416378 416395 TATTGGTCTCAAAGA CCGCCCAGTAATAAAGATCT CCA AAATCTTTATCACTGAGCGG TTAGGCATGAGTGCC TERM 593 416515 - 416535 + G 100 -12.6 -5.93809 | TTTTTTGGTTTTTTT CGCAAGGC CCAGA GCCTTGCG TTTTTTTTGTCCAAA CTLon_0332 416321 - 416641 + | hypothetical protein TERM 594 418104 - 418082 - g 80 -9.8 -3.68261 | opp_overlap 418082 418081 418078, overlap 418075 GTAGAACATCGTAAA GGTCCTGGAG GAC CTCCAGACCC ATTGATTTATCAATA CTLon_0333 416651 - 418333 + | hypothetical protein CTLon_0334 418330 - 418812 + | hypothetical protein TERM 595 418827 - 418837 + T 95 -5.4 -5.81412 | ATCTTGCAATCCAAT CAAG CAG CTTG TTTTTTTTCGCTAGG CTLon_0335 419911 - 418826 - | phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein TERM 596 419500 - 419511 + g 75 -3 -5.1675 | AAGCGAGTTCTCCAT CTAT TGCC ATAG TTTTTTGATGCATGA CTLon_0336 421822 - 420083 - | putative decarboxylase TERM 597 420145 - 420163 + g 73 -8.2 -3.73072 | CCTCATCAGCTTCGA CTTCCTTA GGA TAAGGAGG TTTCATGAGGGCATT TERM 598 421343 - 421325 - G 70 -9.6 -2.85351 | overlap 421327 GCGCTGCATACGATA CATCCCTA AAT TAGGGACG CCATTCTCAGGAGAT rpmB 422211 - 421942 - | 50S ribosomal protein L28 malQ 423943 - 422360 - | 4-alpha-glucanotransferase TERM 599 423554 - 423537 - G 81 -4.1 -5.41143 | opp_overlap 423537 TACTCTTGAAAAAAA TCTCTCT TCAT AGAGCGA ACTTTTTCATAATGT scc1 424387 - 423947 - | type III secretion chaperone copN 425690 - 424425 - | low calcium response protein E (TTSS effector protein) lcrD 427834 - 425708 - | low calcium response protein D ( to be part of the TTSS apparatus) sctU 428916 - 427834 - | type III secretion system protein TERM 600 428869 - 428896 + g 70 -2.6 -5.06052 | gap 1, overlap 428870 CTGCCCCTTTTTTCT AGCG-TCCCGAAG ACG CTTGGGGGTCGCC TTTTCTGTTTTTTCG TERM 601 429142 - 429130 - H 79 -4.8 -5.29445 | CCTTAATAATAAAAA GGCT GTGTT AGCC TTAAGAAAAAGCTGT CTLon_0343 429173 - 430273 + | translation-associated GTPase ribF 431187 - 430282 - | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 602 431142 - 431120 - GT 80 -4.9 -5.09895 | CACCCATCGAAAAAA CCTATAGTA ACAGA TTCTATAGG ATTAGAGGACGGGAG truB 431869 - 431144 - | tRNA pseudouridine synthase B rbfA 432278 - 431907 - | ribosome-binding factor A infA 434975 - 432285 - | translation initiation factor IF-2 TERM 603 432872 - 432892 + gr 70 -2.6 -4.97957 | AACCTTGAACATCTG CTTTGATA ATCAG TTTCAAAG TTTTCTTGTTCTGTA TERM 604 432935 - 432950 + gr 70 -7.6 -3.6761 | AGTTTGGTCGTTTTT TCTGCA AAGC TGCAGA TCTTTGTTGGCCAGC TERM 605 433979 - 433958 - GR 70 -7.3 -3.73445 | opp_overlap 433958 433974, overlap 433956 TACCATGAATAAAGA GCTTCTGAA TAAG TTCTGAAGC TTTTAGCTTCATTTC TERM 606 433958 - 433979 + gr 76 -7.3 -4.33808 | opp_overlap 433956 433958, overlap 433974 TACCATGAATAAAGA GCTTCTGAA TAAG TTCTGAAGC TTTTAGCTTCATTTC TERM 607 433974 - 433990 + gr 77 -9.5 -3.53091 | opp_overlap 433958 433956, overlap 433958 CTTCTGAATAAGTTC TGAAGCT TTT AGCTTCA TTTCAGCAGCAAGAT TERM 608 434207 - 434217 + gr 79 -8.2 -4.15654 | GATCTCGTTCAGATC CGCG CTT CGCG TTGTTATTATTGTTG TERM 609 434516 - 434546 + gr 78 -5.5 -4.96427 | gap 1, opp_overlap 434530 CTTCAATACGCTCCG GAGTC-TCTGGAGA AGTC TCTTCTGAAGACTC TTTCTTTTCTTCTTG TERM 610 434725 - 434753 + gr 100 -12.5 -3.65812 | opp_overlap 434721 434722 GCAAATGAAGAGCGA TCTTTTGCGCGAA TTC TTCGCGCAGTAGA TTCTGTTGCGCCCAA TERM 611 434937 - 434949 + gr 71 -4.1 -4.75404 | CTGTGCGTTCTTAAT CTTCA ACT TGAGG TTTTTCGTCAACTTT nusA 436236 - 434932 - | transcription elongation factor NusA TERM 612 435459 - 435473 + gr 76 -10 -3.14344 | GAATGATATTTTTGA TGCGAG ATC CTCGCA TTCCTACAAAAGCTC TERM 613 436289 - 436312 + r 100 -12.5 -3.90045 | opp_overlap 436281 436291, overlap 436284 AAAATAATGCTAACG GAGCAGAGC CCTAGA GCTCTGCTC TTATGTTTGCTCTTC TERM 614 436310 - 436291 - R 73 -10 -2.55818 | opp_overlap 436289 436284, overlap 436281 AATAATGCTAACGGA GCAGAGCC CTAG AGCTCTGC TCTTATGTTTGCTCT rpsA 438063 - 436354 - | 30S ribosomal protein S1 TERM 615 437264 - 437279 + g 70 -7.6 -3.61178 | overlap 437256 ATGACTTCCAATTCT TGGTTG AGTT CAACCA TTTCGGATGGGTGAC trxB 438308 - 439363 + | thioredoxin reductase acpS 439369 - 439728 + | 4'-phosphopantetheinyl transferase CTLon_0352 440190 - 439729 - | hypothetical protein TERM 616 439940 - 439921 - G 70 -7.2 -3.885 | ACGTTTAGATAAGAA GGACCTTT TAAT AAAAGTCC ACGGGGAAATTTCTT TERM 617 440223 - 440271 + H 91 -12.8 -3.16564 | gap 1, opp_overlap 440244, overlap 440229 AAAAAGAGGGAGTAT GCCAAAGCTTATTGATT-AGAAC AAGG GCTCTTGATTAATAAGCTTTGGC TTCGTAGGATGAGGG TERM 618 440742 - 440725 - g 95 -5.5 -5.89827 | opp_overlap 440734 AAGGATCAAAAAAAA CCTTCGA CTTC TCGAGGG GAGATGCTTTCAGGT CTLon_0353 440326 - 440787 + | hypothetical protein CTLon_0354 440822 - 441718 + | hypothetical protein fabI 442604 - 441708 - | enoyl-(acyl carrier protein) reductase TERM 619 443438 - 443454 + G 81 -9.5 -3.78436 | opp_overlap 443429 CTAATAGGCGATGCC GTTGATG GAA CATCAAC TTCTTCATCTCCATT CTLon_0356 442916 - 444886 + | hypothetical protein TERM 620 444983 - 444944 - T 79 -10 -3.48593 | gap 1, opp_overlap 444945, overlap 444945 444947 GAGGGCTTTATATAA TGAGACCGAGCTTCC-CAT TCT AAGCGGAGGCTCGGTCTCT TTTTTGTATCGGATT TERM 621 444982 - 444945 - T 91 -13.5 -2.68942 | gap 1, opp_overlap 444945, overlap 444944 444947 AGGGCTTTATATAAT GAGACCGAGCTTCC-CAT TCT AAGCGGAGGCTCGGTCTC TTTTTTGTATCGGAT TERM 622 444945 - 444982 + T 100 -15.7 -5.37043 | gap 1, opp_overlap 444945 444944 444947 AGGGCTTTATATAAT GAGACCGAGCTTCC-CAT TCT AAGCGGAGGCTCGGTCTC TTTTTTGTATCGGAT TERM 623 444980 - 444947 - T 76 -10.3 -2.88822 | gap 1, opp_overlap 444945, overlap 444945 444944 GGCTTTATATAATGA GACCGAGCTTCC-CAT TCT AAGCGGAGGCTCGGTC TCTTTTTTGTATCGG CTLon_0357 445910 - 445086 - | tRNA pseudouridine synthase A TERM 624 446363 - 446341 - g 70 -9.2 -2.87211 | opp_overlap 446340 446341 ATTGGGTCTTATACA GCAAATGCTA TCC TTGCATTTGC ATTTAAGCAAAAAAA CTLon_0358 445957 - 447063 + | putative DNA glycosylase TERM 625 447093 - 447107 + F 85 -2.8 -5.71712 | overlap 447094 TAGTCTTTTTTCGAC TCTTTG CAG CAGAGG TTTTTTTATATGAAC CTLon_0359 447117 - 447872 + | hypothetical protein CTLon_0360 448673 - 447885 - | hypothetical protein TERM 626 448454 - 448432 - G 76 -9.2 -3.40878 | opp_overlap 448430, overlap 448430 ATCATGGTAACAATA GAGTACTTGA GAC TCACGTACTC AATTTCTACCGCATA TERM 627 448770 - 448745 - R 100 -11.2 -5.86332 | GGAATCTAAAAAAAA GCCTCGTTCC TTTTGG GAAACGAGGC TCGAAGAATCTATTT hsp60_1 450436 - 448802 - | chaperonin GroEL groES 450783 - 450475 - | co-chaperonin GroES TERM 628 450919 - 450943 + r 88 -9.4 -4.6526 | TTTTTGCAACTGGTT TAGCAGTTGG CATGA TCAACTGCTA TTTTTAAAAATTTAT pepF 452781 - 450955 - | oligoendopeptidase F TERM 629 452366 - 452388 + g 72 -9.2 -3.14132 | TCCTGAAGTTCGGGA GAGGCTAATA GCA TATTAGCCAC TTGCTGAGGGAGGGC TERM 630 454789 - 454803 + G 75 -8.6 -3.76373 | opp_overlap 454788 454784 454789 GTCTTTAGAAGAAAG GGTTGT CGG ACAACC TTTCGCTATTGCCGC TERM 631 454921 - 454943 + G 82 -5.7 -4.93877 | gap 1, opp_overlap 454921 AGTAGGGAAAACTGA GCT-TGCTAA AGCA TTAGCAGAGC TTTTATTTAATAAGG clpB 453083 - 455686 + | chaperone-protease ClpB TERM 632 456003 - 456030 + G 76 -7.8 -4.08939 | opp_overlap 456002, overlap 456024 AAATCGGAGGAAGAG CTCTTTGCAAAA TTGA TTTTGCCAAGGG TTTCTCTAGGTGTTC TERM 633 456044 - 456058 + G 71 -8.6 -3.54307 | GGTTTCTCTAGGTGT TCATCG GGA CGATGA TTTAGCGAGAGTGTT CTLon_0365 455712 - 457172 + | hypothetical protein incD 457358 - 457840 + | inclusion membrane protein D incE 457907 - 458305 + | inclusion membrane protein E incF 458310 - 458624 + | inclusion membrane protein F incG 458711 - 459214 + | inclusion membrane protein G TERM 634 459234 - 459269 + T 100 -15 -4.4009 | opp_overlap 459243, overlap 459243 GACATGTGATTCGCG TAGGAAAAAGAGGAGG GAGA CCTCCTCTTTTTTTTA TTTTGTAGAGTGCCG TERM 635 459260 - 459243 - T 91 -11.3 -4.72272 | opp_overlap 459234 459243 TTCGCGTAGGAAAAA GAGGAGG GAGA CCTCCTC TTTTTTTTATTTTGT TERM 636 459243 - 459260 + T 100 -11.3 -6.37666 | opp_overlap 459243, overlap 459234 TTCGCGTAGGAAAAA GAGGAGG GAGA CCTCCTC TTTTTTTTATTTTGT TERM 637 459370 - 459387 + T 91 -9.9 -4.83615 | opp_overlap 459370 TTTGCATTGCAAAAA GCTCCTA AGAC TAGGAGC TTTTTGTAGAGGGTA TERM 638 459387 - 459370 - T 89 -9.9 -4.62069 | opp_overlap 459370 TTTGCATTGCAAAAA GCTCCTA AGAC TAGGAGC TTTTTGTAGAGGGTA incA 460120 - 459380 - | inclusion membrane protein A TERM 639 459687 - 459705 + g 70 -6 -4.39329 | TCTGCTATGATTTCT TGCGAAAA GAG TTTGCGCA TTTCTTCTGTAGAGT CTLon_0371 460522 - 460247 - | hypothetical protein TERM 640 460507 - 460489 - G 71 -9.6 -3.00544 | GAAAAGGAGGATAGA GGGAAACT CTT AGTTCCCC AAAAATAATTGCCAT araD 460621 - 461307 + | ribulose-phosphate 3-epimerase TERM 641 461415 - 461390 - g 93 -9.1 -4.49556 | overlap 461391 GTCTCAGGAAACAAA GGGGATACTTT TATT AAAGTATCCCT GCAGGCCGCTGGATC TERM 642 461414 - 461391 - g 95 -12.6 -3.29252 | overlap 461390 TCTCAGGAAACAAAG GGGATACTTT TATT AAAGTATCCC TGCAGGCCGCTGGAT TERM 643 461492 - 461480 - g 74 -7.7 -3.96449 | CAAGAGGTCAAAGAA GCTCA GTT TGAGC CAAGAAATTTAGAGT TERM 644 461634 - 461651 + G 79 -3.4 -5.37043 | overlap 461636 TTACCGTCTTTGCTT TAGTGC ATGAAG GCACTG TTTTTTCTATGGAGT efp 461294 - 461851 + | elongation factor P TERM 645 461991 - 462013 + G 72 -7.8 -3.84284 | overlap 461982 CAAGTATTCAGGAGC CAGTCTTTTA TGA TAACAGACTG TTTGCTGGATTTTCC accB 461864 - 462358 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 646 463333 - 463319 - g 70 -2.8 -4.91712 | overlap 463320 GCTAAGGGAGAAAAA CTGCCT TGG AAGCAA AAGAATATAGAGTTT accC 462362 - 463735 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 647 463715 - 463738 + F 100 -2.4 -6.19302 | opp_overlap 463717 463718, overlap 463717 463718 GGTAGCACCTTTTTA AATTTAGCTG ATGG CAGCTAACTA TTTTTTTTATTATGT TERM 648 463717 - 463736 + F 72 -5 -4.71468 | opp_overlap 463717 463718, overlap 463715 463718 TAGCACCTTTTTAAA TTTAGCTG ATGG CAGCTAAC TATTTTTTTTATTAT TERM 649 463718 - 463735 + F 71 -8.5 -3.39221 | opp_overlap 463718 463717, overlap 463717 463715 AGCACCTTTTTAAAT TTAGCTG ATGG CAGCTAA CTATTTTTTTTATTA rplM 463958 - 464410 + | 50S ribosomal protein L13 rpsI 464436 - 464825 + | 30S ribosomal protein S9 TERM 650 464858 - 464891 + T 100 -14.1 -4.56597 | opp_overlap 464865 464882, overlap 464852 464860 464865 TATTGGAGTGCGTTT CAGAAAAGCCTTCTT TCAA AAGAAGGCTTTTCTA TTTTTAGGAACGCCA TERM 651 464860 - 464889 + T 100 -16.7 -3.90048 | opp_overlap 464865 464882, overlap 464852 464858 464865 TTGGAGTGCGTTTCA GAAAAGCCTTCTT TCAA AAGAAGGCTTTTC TATTTTTAGGAACGC TERM 652 464884 - 464865 - T 90 -10.8 -4.36914 | opp_overlap 464852 464860 464858 464865, overlap 464882 GTGCGTTTCAGAAAA GCCTTCTT TCAA AAGAAGGC TTTTCTATTTTTAGG TERM 653 464865 - 464884 + T 93 -10.8 -4.98672 | opp_overlap 464865 464882, overlap 464852 464860 464858 GTGCGTTTCAGAAAA GCCTTCTT TCAA AAGAAGGC TTTTCTATTTTTAGG CTLon_0378 465724 - 464873 - | chitinase TERM 654 465006 - 465036 + g 79 -7.7 -4.30844 | gap 1 ACTTTCCCTATTTTT TC-CGCAGCATGAA TGAA TTCATGCTCCGAGA TTTTCATCATAACAT TERM 655 465315 - 465303 - G 72 -6.3 -4.27211 | overlap 465298 GCGAAAGAAACTAAA TCTCT TAG AGAGA ATGAAGAATTTAAAA TERM 656 465780 - 465753 - R 71 -6.4 -4.05389 | opp_overlap 465755, overlap 465755 TAGAGACATCACAAA GAGGACTAAAAA GAGG TTCTTAGTCCTT GTTGAACGCGACTAT TERM 657 465778 - 465755 - R 74 -9 -3.61175 | opp_overlap 465755, overlap 465753 GAGACATCACAAAGA GGACTAAAAA GAGG TTCTTAGTCC TTGTTGAACGCGACT adk 466557 - 465820 - | adenylate kinase CTLon_0380 466764 - 467408 + | putative ABC-membrane transport protein, inner membrane component CTLon_0381 467405 - 468106 + | ABC transporter, ATP-binding component TERM 658 468138 - 468126 - T 72 -7.7 -3.85817 | ATTCTGTTTCAGAAA CTTCC CAC GGAAG AGGAGAGACTGTTTG CTLon_0382 471525 - 468109 - | hypothetical protein TERM 659 469280 - 469292 + g 91 -4.8 -5.71712 | opp_overlap 469280 469278 GATAATAGAGAGAGA CAGG AATAG CCTG TTTTTTTATCTAAGC TERM 660 469434 - 469458 + g 75 -7.2 -4.24342 | ATTGTAATGATCCAT GAGTTTTCTC AGTCA GAGACAACTC TTTATTCATAACAAA TERM 661 469486 - 469475 - G 78 -5.8 -4.79352 | opp_overlap 469475 TTATTCATAACAAAA CGGA AGTC TCCG GTAAGAGCATCCGTT TERM 662 471295 - 471320 + g 80 -2.5 -5.4477 | AGCAAATATTTCAGA TTCGGAGTCGA TTCC TCGGATGCGAA TTTTTTTAGCCGTTT CTLon_0383 472799 - 471522 - | hypothetical protein TERM 663 471709 - 471725 + g 72 -6.5 -4.33258 | opp_overlap 471712, overlap 471712 TTCGCAATGTTATGA GAAGGCT TAT AGCCCTC TTTGTATTTAAGAAT TERM 664 472258 - 472246 - G 95 -7.7 -5.11389 | ACAATATAAATAAAA GCCAT GGA ATGGC TGAAACTAAATAGTT CTLon_0384 473680 - 472877 - | putative methyltransferase TERM 665 472945 - 472915 - G 95 -7.6 -5.06472 | opp_overlap 472923 AGATAAACAAGAAAA GCGGAAACTCCTTG CGA CAAAGATTTTCTGC TCGAGCCCTCTTCCC TERM 666 472954 - 472966 + g 74 -4.1 -5.00884 | overlap 472952 472954 TTTCTGCTCGAGCCC TCTTC CCT GAGGA TTTTTTAGGGGAGAT CTLon_0385 474137 - 474550 + | hypothetical protein TERM 667 474732 - 474747 + G 76 -6.8 -4.48449 | TAACACCAGTGGTAT GCTCTC CAAT GGGAGC TTTCTGTTTTGCTCA TERM 668 475285 - 475303 + G 81 -5.2 -5.10461 | overlap 475287 CTGTGCTTTATTAGC TTCTGCGG TAA TCGCAGCA TTTTTCTTAGGTGCA CTLon_0386 474608 - 475690 + | hypothetical protein CTLon_0387 475780 - 476499 + | putative phospholipase-carboxylesterase family protein CTLon_0388 476518 - 477363 + | hypothetical protein TERM 669 477497 - 477514 + G 74 -4.2 -4.93877 | TGCACCACATTAGAT GAACAA AACCAA TTGTTC TTTTCTTTAATAGAG CTLon_0389 477341 - 478288 + | microsomal dipeptidase oppA 479565 - 478285 - | oligopeptide transport system binding protein TERM 670 479322 - 479312 - G 75 -3.2 -5.1244 | TTACGAATACAAAAA CGAT AAA ACCG CCCGTCTTCCGAAAT TERM 671 479703 - 479667 - H 79 -8.9 -3.8917 | opp_overlap 479666 479664 479699, overlap 479668 GCGGAAGTATAATAA CTTTCGGAGAAAAATAC ACA GTATTTTTCGCTGAAAA GAATGCTTTTCTCGT TERM 672 479702 - 479668 - H 75 -10.2 -2.9302 | opp_overlap 479666 479664 479699, overlap 479667 CGGAAGTATAATAAC TTTCGGAGAAAAATAC ACA GTATTTTTCGCTGAAA AGAATGCTTTTCTCG CTLon_0391 479741 - 480427 + | exported protein CTLon_0392 480611 - 481057 + | protein translocase TERM 673 481333 - 481350 + F 100 -9.1 -5.70829 | TCGGTTGTTTGCGAA GCTTGGG TTCT CCCAGGC TTTTTTTATGCTCTT TERM 674 481604 - 481586 - g 71 -6.8 -4.17316 | opp_overlap 481588 ATTTCCGCAAAAGAA TCCTTTTC TGT GAAAAGAA AGGTTGATGTGAATG TERM 675 482249 - 482271 + G 100 -12.1 -4.45771 | opp_overlap 482248 AAGGGCGGAGACTAT GTGGACAAG TCCGC CTTGTCCAC TTTATATTTTGGAGT CTLon_0393 481457 - 482314 + | hypothetical protein CTLon_0394 482316 - 483158 + | hypothetical protein CTLon_0395 483158 - 484024 + | hypothetical protein TERM 676 484046 - 484071 + F 83 -9.8 -3.88001 | TCTTTTCTATTTACA CCGCTTAGCT TGCTTT AGTTAAGCGG TTCCTTTTTATCAAA pkn1 484210 - 486054 + | serine-threonine-protein kinase TERM 677 487897 - 487882 - g 76 -10.4 -2.94705 | overlap 487877 GAGAACGCAAGCAGA GGAGCG TATC CGCTCC CTAGGGGGGAAAGTG TERM 678 487937 - 487910 - g 71 -8.4 -3.55444 | overlap 487911 487914 TCCCTAGGGGGGAAA GTGAGCTCTTCG GTAT CGAAGAGCACAT ATGCCGTCATAGCGG TERM 679 487936 - 487911 - g 83 -11.9 -2.73124 | overlap 487910 487914 CCCTAGGGGGGAAAG TGAGCTCTTCG GTAT CGAAGAGCACA TATGCCGTCATAGCG TERM 680 487933 - 487914 - g 83 -12.2 -2.64472 | overlap 487911 487910 TAGGGGGGAAAGTGA GCTCTTCG GTAT CGAAGAGC ACATATGCCGTCATA dnlJ 486065 - 488056 + | NAD-dependent DNA ligase LigA TERM 681 489271 - 489260 - g 82 -3 -5.49568 | AATCCAAAACAAAAA TCTT GATC AAGA CTCTCTACGAAAACT TERM 682 490271 - 490249 - g 71 -4.2 -4.78077 | opp_overlap 490249 TTCAAGCAAAAGAAA CCTTGTTAGA GGC TTTAACAAAG GGCGAACAGCCTTCT TERM 683 491010 - 491020 + G 71 -6.8 -4.183 | GCAGAATTACGGGTA GCTG AAG CAGC TTTATTAGGAGTTCA TERM 684 491637 - 491625 - g 71 -4.1 -4.82678 | CTACAAAAAGTAAAA GCTCT GCT AGAAC TAAATATGTGTTTAG TERM 685 491727 - 491692 - g 71 -8.4 -3.4149 | gap 1 ATTCAAGGCTAAAGA GAGAGGTTTTCGAAGCA TCT TGCT-CTAACACCTCTC AGCAACTTCTTCAAT CTLon_0398 488154 - 492503 + | putative integral membrane protein TERM 686 492528 - 492509 - T 100 -5.7 -6.01369 | gap 1, opp_overlap 492510 492512, overlap 492510 GAAAGAATAAAAAAA GGAGGGCT GCTAA AGCCC-CC TTTTTAGTTAGGATA TERM 687 492510 - 492528 + T 79 -5.9 -4.87291 | opp_overlap 492509 492510, overlap 492512 AAAGAATAAAAAAAG GAGGGCT GCTAA AGCCCCC TTTTTAGTTAGGATA TERM 688 492528 - 492510 - T 79 -8.1 -4.17161 | opp_overlap 492510 492512, overlap 492509 AAAGAATAAAAAAAG GAGGGCT GCTAA AGCCCCC TTTTTAGTTAGGATA mhpA 494089 - 492566 - | FAD-dependent monooxygenase TERM 689 492941 - 492992 + g 80 -11.6 -2.71681 | gap 1 ATCACTAGCTTCATA TTTCGATGC-GCGGTGGGAGGGATA GTA TAGCTCTCCTTCCGCAGCATCGAGC TGCTTACACCCCTTA TERM 690 494273 - 494252 - R 100 -14.5 -4.7033 | opp_overlap 494256 TAATGGAAGAGAAAA GAGAGGCTG AACC CAGCCTCTC TACGAAAACAAACTA CTLon_0400 495236 - 494289 - | hypothetical protein TERM 691 495279 - 495265 - H 86 -8.6 -4.57569 | opp_overlap 495264 495265 TTATTTTTTCAAAAA GCTTCT AAA AGAAGC GTTGATTTCTGCATA rpmG 495635 - 495793 + | 50S ribosomal protein L33 TERM 692 495893 - 495875 - g 71 -4.6 -4.67234 | ATCTAATTCCAAAAA GAAAAAGA CTT TCCTCTTC CATAGTTTCTGCTTT TERM 693 496851 - 496866 + G 70 -2.6 -5.04385 | TTGGGAAATCTCTTC CTTATA TGAT TATGAG TTTTTTAAGCCTATC TERM 694 497120 - 497136 + G 71 -9.5 -3.06569 | opp_overlap 497120, overlap 497119 TTTTAGCTGCATTAA CCCTAAA AAA TTTAGGG GTTTTGACGCATTGG TERM 695 497136 - 497120 - g 72 -9.5 -3.15544 | opp_overlap 497120 497119 TTTTAGCTGCATTAA CCCTAAA AAA TTTAGGG GTTTTGACGCATTGG CTLon_0402 495829 - 497340 + | lipoprotein releasing systen, inner membrane component TERM 696 498003 - 497971 - g 100 -14.9 -4.17023 | opp_overlap 497970 GGAACTAGCTGAAAA GTGCCACCGAGAAGA GAT TCTCCGCGATGGCAC CTTAATGCAGCGACA CTLon_0403 497345 - 498022 + | lipoprotein release ATP-binding component CTLon_0404 500605 - 498173 - | MAC/perforin family protein TERM 697 500295 - 500305 + g 71 -6.8 -4.18042 | ATTTCTTCTAGGAGC TCCG CAT CGGA TTTCATTTGTATAGA TERM 698 502294 - 502318 + r 100 -15.1 -3.59979 | opp_overlap 502299, overlap 502299 TAGATGCTTTCCTCT GAGAAGGCAGG AAA CTTGCCTTCTC TTTCGACTACAAAAC TERM 699 502299 - 502313 + r 72 -7.8 -3.82946 | opp_overlap 502299, overlap 502294 GCTTTCCTCTGAGAA GGCAGG AAA CTTGCC TTCTCTTTCGACTAC CTLon_0406 503280 - 502342 - | phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein CTLon_0407 504996 - 503794 - | phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein TERM 700 505286 - 505262 - R 81 -10.1 -3.71998 | opp_overlap 505254 GATGGATGAAGATAA GGTCTTCTATA TTG TATTGAAGACC TCGGACAGTCCAGTT TERM 701 506840 - 506818 - R 82 -9.2 -4.04206 | CTATTGTGAGAGAAA GAGGCAGA GGGATGG TCTGCCTC CGAGAGAACTTAGAA TERM 702 506962 - 506975 + r 76 -5.3 -5.00467 | TTTCTTTAGCTATAT CTTGA CAGA TCAAG TTTTCTTCTTCTTGA TERM 703 507082 - 507070 - R 70 -9.1 -3.08679 | CTTTCGTATCTAAGA GCACG GAG CGTGC TTCCAAATCGCGAGC CTLon_0410 508091 - 507345 - | hypothetical protein TERM 704 508150 - 508160 + H 79 -8.2 -4.07687 | opp_overlap 508139, overlap 508139 GAAAGCGACCTTAGC CGCG TTT CGCG TTTTAACAAAACGAT CTLon_0412 508703 - 510232 + | hypothetical protein CTLon_0413 510285 - 510545 + | hypothetical protein trpR 511448 - 511732 + | Trp operon repressor TERM 705 511851 - 511867 + F 75 -9.5 -3.34522 | opp_overlap 511851 AGCATGCCATGCAAA TCAGCTT TTC AAGCTGA TTGCTTCCAAGATAT TERM 706 511867 - 511851 - f 78 -9.5 -3.6608 | opp_overlap 511851 AGCATGCCATGCAAA TCAGCTT TTC AAGCTGA TTGCTTCCAAGATAT TERM 707 511985 - 512010 + F 76 -5.5 -5.00884 | TTTATTTGATTAAGA GATGTTCTTAT AGAA GTAAGAGCGTC TTTTTTGCGCAGGAT TERM 708 512099 - 512080 - f 72 -5.8 -4.42653 | opp_overlap 512080 ATTTTATGGAGAAAA GATGTTCA AACA TAAACATC CTTTTGGGGGAGCGT trpB 512081 - 513259 + | tryptophan synthase subunit beta TERM 709 513380 - 513394 + G 70 -2.8 -4.93898 | AGGTGTTGATATTCT GGAACT AGG ATTTCC TTTTTCTGATCCTGT TERM 710 513644 - 513659 + G 71 -3.2 -5.04987 | opp_overlap 513644 513654, overlap 513645 AGCACCTTTATCACA CGGAGA AAAA TCTCCA TTTTTTGAAGATCTT TERM 711 513682 - 513696 + G 81 -7.2 -4.64613 | AAGATCTTTTAGCTG TAGGAT TGG ATCCTA TTTTGCTTATTTCTG trpA 513252 - 514013 + | tryptophan synthase subunit alpha TERM 712 514027 - 514062 + T 80 -9.8 -3.65314 | opp_overlap 514028 514034, overlap 514028 514030 AATTTATGAATATGA ATATGAAGCCCAGGCA TCGA TATCTGGGCTTCATAG TTGTCTGTATAGATT TERM 713 514028 - 514061 + T 93 -13.3 -2.78465 | opp_overlap 514028 514034, overlap 514027 514030 ATTTATGAATATGAA TATGAAGCCCAGGCA TCGA TATCTGGGCTTCATA GTTGTCTGTATAGAT TERM 714 514061 - 514028 - T 100 -13.3 -3.39717 | opp_overlap 514028 514027 514030, overlap 514034 ATTTATGAATATGAA TATGAAGCCCAGGCA TCGA TATCTGGGCTTCATA GTTGTCTGTATAGAT TERM 715 514030 - 514059 + T 82 -11.5 -2.93455 | opp_overlap 514028 514034, overlap 514028 514027 TTATGAATATGAATA TGAAGCCCAGGCA TCGA TATCTGGGCTTCA TAGTTGTCTGTATAG TERM 716 514156 - 514143 - T 77 -5.9 -4.82901 | opp_overlap 514143 TGTTTTTTATAAAAA GCCCC TTAC GAGGC TTCTCTTTTCGAACA CTLon_0419 514725 - 514204 - | hypothetical protein TERM 717 514488 - 514501 + g 72 -8.1 -3.90048 | overlap 514491 ATAACGTCATTGCTT GCTCG GCTT CGAGC TGTTTTTGCAACAAA TERM 718 514491 - 514503 + g 70 -5.5 -4.56597 | overlap 514488 ACGTCATTGCTTGCT CGGCT TCG AGCTG TTTTTGCAACAAAGC CTLon_0420 514956 - 514765 - | hypothetical protein TERM 719 516126 - 516136 + G 82 -6.8 -4.86731 | TAGTTGGGTTACCCT GGAG CTC CTCC TTTTCTTTAGAAGAA TERM 720 516171 - 516160 - g 71 -4.4 -4.79953 | AGAAGAACAAAGAAA TCTC CCTA GAGA AAAATTATTTGATTA oppA2 515333 - 516922 + | oligopeptide transport system binding protein dsbB 517356 - 516949 - | putative disulfide oxidoreductase dsbG 518069 - 517353 - | disulfide bond chaperone CTLon_0425 518215 - 519429 + | putative integral membrane protein CTLon_0426 519943 - 519431 - | hypothetical protein CTLon_0427 520779 - 520087 - | ABC transporter, ATP-binding protein CTLon_0428 521797 - 521087 - | hypothetical protein TERM 721 521840 - 521851 + H 89 -5.8 -5.55769 | opp_overlap 521840 GTTACTTTATGATAA CCTC GCAT GAGG TTTTTTGTTATAAGA TERM 722 522717 - 522730 + G 70 -5.3 -4.431 | CATATTGGTGTTTAT GCTTT TAGA AAAGC TTTTCTAAGTGAATA kdsB 522165 - 522929 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 723 524415 - 524425 + G 71 -4 -4.8543 | TGCTTGGCGTACAGT TTCA TCC TGAA TTTTTATCAAAATTA pyrG 522905 - 524524 + | CTP synthetase CTLon_0431 524511 - 524957 + | Holliday junction resolvase-like protein TERM 724 524965 - 524979 + F 89 -10 -4.36914 | TATACTAGGACCCCT CATGGC AAA GCCATG TTTTATGAGAGAGAA zwf 525074 - 526597 + | glucose-6-phosphate 1-dehydrogenase devB 526622 - 527392 + | 6-phosphogluconolactonase dnaX 528261 - 527389 - | DNA polymerase III subunit delta' tdk 528886 - 528275 - | thymidylate kinase TERM 725 528831 - 528819 - G 70 -7.7 -3.72576 | opp_overlap 528819 528818 CCTTCTTCTATTAAA CGCTT AGA AAGCG CTTGTATAAACTGAG gyrA 531398 - 528888 - | DNA gyrase subunit A gyrB2 533827 - 531413 - | DNA gyrase subunit B TERM 726 531965 - 531939 - G 100 -11.6 -4.2586 | GGATAGTAATACAAA GGATAAGCTCCG TCT CGGAACATATCC AAGAATTCAGAAAAT TERM 727 532727 - 532712 - G 71 -3.2 -5.00884 | opp_overlap 532713, overlap 532713 ATTTTCTTCAAAAAA TGTGGT TAAC ACCTCA CCACTAATTTGCTGA TERM 728 533216 - 533197 - G 71 -5 -4.59773 | opp_overlap 533200, overlap 533200 GGTCATCTTCAAAAA CAATCGTG GCTC CACGATTT AAAAATGCTAATTCT TERM 729 533213 - 533200 - G 76 -6.7 -4.41633 | opp_overlap 533200, overlap 533197 CATCTTCAAAAACAA TCGTG GCTC CACGA TTTAAAAATGCTAAT CTLon_0438 534180 - 533830 - | hypothetical protein CTLon_0439 535022 - 534327 - | hypothetical protein TERM 730 534543 - 534566 + g 71 -8.2 -3.54543 | opp_overlap 534545 534547 TTTGACTAGTTCAAC TACATGGCTG CCCA CAGCGATGTA TTTAGGAACATGACT TERM 731 534916 - 534902 - G 72 -6.4 -4.32048 | overlap 534903 CAACAATAGCCAAAA CTGTGC CCA GCACAA ATAAAGCTAACGAGA tgt 536244 - 535126 - | queuine tRNA-ribosyltransferase TERM 732 535869 - 535894 + g 74 -7.7 -3.98747 | overlap 535872 ATTTAAAGTGTACCC CGTCATCATTA ACTT TAATGATGGTG TTTCCTCCTTTTTTC TERM 733 536194 - 536205 + g 86 -3 -5.65513 | CTCTATCCGACCTAC TCTA GCCC TAGA TTTTTTTGATTGATG TERM 734 536363 - 536337 - R 93 -10.2 -5.14477 | opp_overlap 536340 GACATAGTGAAAAAA GCCCGAAGAAAA CCT TTGTCTTCGGAC TCACCCACTATTTGA mgtE 537783 - 536371 - | magnesium transport protein TERM 735 537348 - 537334 - G 81 -4.3 -5.30575 | TAAAAAGGCAAAAAA CTCAT TGGTC ATGAG TCGCCCAGCTGTATT TERM 736 537983 - 537972 - R 75 -4.4 -5.09245 | opp_overlap 537972 537980 CGAAAACGACAAAAA GTCT TCCG AGAC TCTTAAACAAGAGTC TERM 737 538197 - 538215 + r 81 -10.4 -3.57144 | opp_overlap 538190 538188 GCAAAATCGCTTTAC CTGCTAAA AAC TTTAGCAG TTTAAAACTAAAAGC CTLon_0442 539314 - 538223 - | putative integral membrane protein CTLon_0443 539540 - 539860 + | hypothetical protein gcp 539936 - 540952 + | O-sialoglycoprotein endopeptidase TERM 738 541141 - 541130 - gf 70 -5.8 -4.31433 | opp_overlap 541133 GATTGGTACAAGAAA CTCC TTCT GGAG AAGTCTTCCCTGCTT TERM 739 542380 - 542358 - gf 78 -5.6 -4.87328 | overlap 542351 CATAGAAAGACAAAA CGTCATAGAA CCC CTCTATCACG ACGTGTTCCATTATA oppA3 540916 - 542472 + | oligopeptide transport system binding protein oppB 542631 - 543572 + | oligopeptide transport system membrane permease oppC 543604 - 544449 + | oligopeptide transport system membrane permease oppD 544442 - 545275 + | oligopeptide transport system ATP-binding protein oppF 545290 - 546033 + | oligopeptide transport system ATP-binding protein TERM 740 546879 - 546897 + G 82 -4.6 -5.36965 | overlap 546881 546890 GTTGCTTCCATTTGC GCTCTTTA TCC TAAAGAAC TTTTTTATCCTATTA CTLon_0450 546345 - 547094 + | hypothetical protein TERM 741 548389 - 548407 + G 75 -8.8 -3.61609 | opp_overlap 548386 548389 AGGACTCACACACTA CGGATCTG GTC CAGCTCCG TTATACTTTGGATCC CTLon_0451 547124 - 548539 + | sodium:sulfate symporter TERM 742 548610 - 548631 + G 76 -10.9 -2.64293 | overlap 548609 548606 548612 ACGCCTTCTTTGTGT CGGGAGCTT CAAA AAGCTCCTG CTCTTCTATTAACAG TERM 743 548612 - 548629 + G 72 -9.9 -2.85947 | overlap 548610 548609 548606 GCCTTCTTTGTGTCG GGAGCTT CAAA AAGCTCC TGCTCTTCTATTAAC TERM 744 550112 - 550141 + G 73 -5.7 -4.4352 | ACAAATACATTCTCC GGAGGATGCTCAT TCTG ATGATTTTCCTCC TTTAATTTTGTTTTT pfkA 548559 - 550220 + | diphosphate--fructose-6-phosphate 1-phosphotransferase CTLon_0453 550229 - 551077 + | hypothetical protein pfkA_2 551059 - 552705 + | diphosphate--fructose-6-phosphate 1-phosphotransferase gseA 554246 - 552951 - | 3-deoxy-D-manno-octulosonic-acid transferase leuS 556702 - 554243 - | leucyl-tRNA synthetase TERM 745 554758 - 554745 - G 75 -5.3 -4.86001 | ACCATTTCATAAAAA CGATT CAAA AATCG TCTGCAACCAGCAAC TERM 746 554775 - 554791 + g 70 -2.9 -5.01422 | overlap 554777 CTGCAACCAGCAACT CCTTGGT TAG ACCAGAG TTTATTTTTATCTAA TERM 747 555142 - 555112 - G 80 -9 -3.91473 | overlap 555116 AGAAACGCGCATAAA GTAAGTGCAGTACA GCA TGTTCTGCACCTCC AATATACAGATCTAC TERM 748 555138 - 555116 - G 82 -10.6 -3.60798 | overlap 555112 ACGCGCATAAAGTAA GTGCAGTACA GCA TGTTCTGCAC CTCCAATATACAGAT TERM 749 557006 - 557017 + G 82 -5.8 -4.93318 | CTATAGTAGCTCGTG CCTC TAAA GAGG TTTTTATAGATTCTC TERM 750 557769 - 557753 - g 70 -3.7 -4.87291 | opp_overlap 557753, overlap 557755 CACCCGAAGGAAAAA TCTTCCA AGC TGGAACA CTTTCAGGAAATCCT TERM 751 557932 - 557946 + G 75 -2.1 -5.27335 | ACATTGGTGCGATAT GGAAG CCTCT TTTCC TTTTTCTTTAACCCA hemL 556900 - 558168 + | glutamate-1-semialdehyde aminotransferase CTLon_0458 558729 - 558160 - | hypothetical protein TERM 752 558229 - 558206 - G 73 -6 -4.51197 | overlap 558207 GATAACGAAGCAAAA CGCCCTCCAA GATG TTGGAGAACA TCGGACCACATTCTT TERM 753 558421 - 558410 - G 85 -4.4 -5.50723 | overlap 558412 CCAGCAAAAGAAAAA TCTC CTCC GAGA AATACGGACGGACAA CTLon_0459 559195 - 558749 - | hypothetical protein rpiA 559913 - 559185 - | ribose-5-phosphate isomerase A CTLon_0461 561651 - 560008 - | hypothetical protein TERM 754 560849 - 560870 + g 71 -8.8 -3.24924 | overlap 560847 TCTTTCAAGTCTTTA CTCACCAA AATCCC TTGGTGAG TCTTCTCAATCAAAG TERM 755 561344 - 561328 - G 73 -7.3 -4.11394 | AGGTGACTCCGAAAA GTGATCT TGC AGACCAC TACTCAAGAATTTAA TERM 756 561529 - 561511 - G 85 -9.6 -4.12474 | overlap 561498 AAGCAACAATAATAA TGCTGCAG CTG CTACAGCA GAGACTAACCCTATA TERM 757 561881 - 561912 + H 79 -5.1 -5.2696 | gap 1, overlap 561882 AGACAATCTGCCATG TCGCATC-CGCTCT GACGG AGAGCGTGTTGCGC TTTTTTGGGTTTTCA TERM 758 561882 - 561911 + H 76 -8.6 -3.74549 | gap 1, overlap 561881 GACAATCTGCCATGT CGCATC-CGCTCT GACGG AGAGCGTGTTGCG CTTTTTTGGGTTTTC TERM 759 562042 - 562027 - g 91 -4.7 -5.60993 | opp_overlap 562027 TGTGTTATAAAAAAA GAAGC TTTAAC GCTTC CTTCTGGAGACTTCG dhnA 561955 - 563001 + | fructose-bisphosphate aldolase TERM 760 564182 - 564170 - g 73 -5.5 -4.64676 | opp_overlap 564175 GTACTCCGAATAAAA GAGCC TAA AGCTC AAAGACTTTATTCTG xasA 563015 - 564415 + | glutamate/gamma-aminobutyrate antiporter TERM 761 564429 - 564457 + F 79 -9 -3.89614 | overlap 564434 AAATTCTTTTGCACA GAAAAGGGCTTT GTAAA GAAGCTCTTTTC TTTCTAAGACTTACC TERM 762 564909 - 564893 - g 72 -7.9 -3.74077 | TTTGATACAGCTAAA GCGGTAG GAG CGACCGC TGTCGCATTCGGACA CTLon_0464 564509 - 565273 + | hypothetical protein surE 565404 - 566255 + | stationary phase survival protein SurE TERM 763 566262 - 566287 + F 83 -7 -5.00616 | CTGGCTTAGTTATCT GTATGTTGAA ACGAAC TTCAACGTAC TTTTTTCAGCAAGAA ubiA 566367 - 567275 + | prenyltransferase CTLon_0467 567272 - 567850 + | aromatic acid decarboxylase TERM 764 567836 - 567862 + T 86 -9.5 -4.50193 | gap 1, opp_overlap 567834 567831 567841 CTTATAAAAAGATGG GAGAACC-CCCG CTAA TGGGAGGTTCTC TTTTCGTTGATTACT CTLon_0468 568743 - 567847 - | hypothetical protein TERM 765 568474 - 568453 - G 82 -6.7 -4.75219 | opp_overlap 568458 TAACCAGCAAGAAAA GATAATAAC CGCA GTTATCATC TGTACAACGAAGTAC TERM 766 568626 - 568594 - G 80 -9.9 -3.61902 | overlap 568602 TGCTATCATAGATAA CCCAACGATCCCACC ATC GATTAAATCGTTGGG AGCGAGAATCATATG TERM 767 568797 - 568813 + r 74 -10.1 -2.62933 | TCGAACCCGCAACTT CCGCCTT GAC AGGGCGG TGCTCTAACCAGTTG CTLon_0469 569173 - 569033 - | hypothetical protein CTLon_0470 569586 - 569200 - | hypothetical protein TERM 768 569694 - 569713 + r 95 -12.2 -4.25104 | opp_overlap 569694 AAGAGAGAAAAAAAA GCCTCTTC ATAA GAAGAGGC TTTTGCTCGGCAAAC TERM 769 569713 - 569694 - R 100 -12.2 -6.08563 | opp_overlap 569694 AAGAGAGAAAAAAAA GCCTCTTC ATAA GAAGAGGC TTTTGCTCGGCAAAC CTLon_0471 570534 - 569728 - | hypothetical protein CTLon_0472 571369 - 570926 - | hypothetical protein TERM 770 571434 - 571413 - R 72 -7.4 -3.99481 | opp_overlap 571412, overlap 571408 GTTATCAAAAGAGAA GCTTTTCT CTAAAT AGAAAAGC GTATCGTCAACTCTT CTLon_0473 571845 - 571477 - | hypothetical protein CTLon_0474 572459 - 571944 - | hypothetical protein CTLon_0475 572989 - 572588 - | hypothetical protein TERM 771 572876 - 572866 - G 78 -5.4 -4.98616 | TTAAAATAGCAAAAA TTCC TAA GGAA ACGGCAAATTCTATA TERM 772 573295 - 573311 + r 70 -2.9 -5.0925 | opp_overlap 573269 573297, overlap 573269 573286 573297 TGGTTAGCGTCTATA GATGCTT TAA GAGCAGC TTTTTCCTTTTCAGC CTLon_0476 573860 - 573270 - | hypothetical protein TERM 773 573521 - 573496 - G 72 -7.5 -3.95852 | opp_overlap 573496 573501 ATCTTATTAATGAAA GAGACGGAGGC CAAA GCGTCCTTCTC TTCTGAAAGATTACG TERM 774 573946 - 573932 - R 71 -6.4 -4.04209 | GCAAATCACTATAAA TCCGCA ACA TGCAGA ACTAAAGCGCCGTAA CTLon_0477 574657 - 574010 - | hypothetical protein TERM 775 576099 - 576083 - g 84 -3.7 -5.5604 | overlap 576085 GTAATTAATAAAAAA TTTTCTG AAA CAGAAGA TCTCCCGCCCTGCTC CTLon_0478 574883 - 576130 + | putative sodium:dicarboxylate symport protein TERM 776 577379 - 577362 - g 73 -8.5 -3.69447 | opp_overlap 577376 577376, overlap 577360 GCATCAAAAAACATA TTGCAGA ATCT TCTGCAA CCATTGCTGCGTTTC CTLon_0479 576314 - 577786 + | sodium-dependent amino acid transporter TERM 777 577841 - 577865 + F 75 -6.4 -4.3953 | overlap 577832 577857 CTCCCTGGCCAATCG GGGCCTTCTA ATTCA TTGAAGGCTC TTTATTGTGATTCAC TERM 778 578053 - 578063 + G 71 -3.2 -4.92757 | ATCGTTACAGTTTGT GGAG GGT TTCC TTTTCTTCTTGCTGC incB 577891 - 578238 + | inclusion membrane protein B TERM 779 578458 - 578470 + G 82 -10.5 -3.7104 | TAATTTCTCTACATG GGGGC CAG GCCCC TTCTTCACTGTCCCT incC 578315 - 578851 + | inclusion membrane protein C CTLon_0482 578909 - 581695 + | putative membrane transport protein CTLon_0483 581724 - 582137 + | Crp family transcriptional regulator TERM 780 582173 - 582143 - T 100 -12.6 -5.85737 | AGATCAATAAAAAAA CCCACAGTTACCTT TGG ATGGGAACTGTGGG CCTAAACTCTTTGTT TERM 781 582175 - 582201 + T 76 -7.4 -4.35461 | opp_overlap 582181, overlap 582181 ATGGGAACTGTGGGC CTAAACTCTTTG TTG CAGAGATTTTAG TTTTGATGCTCTTGG TERM 782 582181 - 582195 + T 72 -5 -4.70319 | opp_overlap 582181, overlap 582175 ACTGTGGGCCTAAAC TCTTTG TTG CAGAGA TTTTAGTTTTGATGC acpP 582431 - 582198 - | acyl carrier protein TERM 783 582569 - 582548 - R 100 -6.7 -5.90981 | CTATAGCAAAAAAAA TCTAGCTTT AAAT AAAACTAGA GTAACCAATCCCTAC fabG 583546 - 582800 - | 3-ketoacyl-(acyl-carrier-protein) reductase fabD 584469 - 583543 - | malonyl-CoA-[acyl-carrier-protein] transacylase fabH 585469 - 584486 - | 3-oxoacyl-(acyl carrier protein) synthase III recR 585607 - 586209 + | recombination protein RecR TERM 784 588620 - 588630 + G 75 -5.4 -4.89477 | opp_overlap 588609 GAAACCACTGTTCGC GGTT ACA AACC TTTTATTATTGGACC CTLon_0489 586583 - 588961 + | outer membrane protein (variable surface antigen) TERM 785 588999 - 588965 - f 85 -12.3 -2.60212 | opp_overlap 588962 588965 588971, overlap 588971 GGAGTATTCTAGAAT CCGAAAGGAGAAGGA GAGCA TCCTTCTCCTTTCAC CTATTGGTATTTTTT TERM 786 588971 - 588993 + F 90 -12.1 -3.67517 | opp_overlap 588971 588965, overlap 588962 588965 TTCTAGAATCCGAAA GGAGAAGGA GAGCA TCCTTCTCC TTTCACCTATTGGTA TERM 787 588993 - 588971 - f 90 -12.1 -3.69354 | opp_overlap 588962 588965 588971, overlap 588965 TTCTAGAATCCGAAA GGAGAAGGA GAGCA TCCTTCTCC TTTCACCTATTGGTA ompH 589028 - 589549 + | Outer membrane protein lpxD 589577 - 590641 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CTLon_0492 591834 - 590638 - | hypothetical protein TERM 788 591420 - 591406 - G 74 -4.3 -4.9725 | opp_overlap 591406 AGGCGTATAGAAAAA CAGTT GTGCT AACTG TTGTCTAAAAGACTT TERM 789 591717 - 591701 - G 73 -5.9 -4.54205 | opp_overlap 591716, overlap 591716 AGGATACCAAAGAAA GAATTCA CTA TGAACTC CACACAAATAAAATT TERM 790 591941 - 591954 + H 75 -8.1 -3.80855 | TTATATTTGCGAAGG CCGGA CCTT TCCGG TTACTTTTTCGCGCC TERM 791 592257 - 592273 + G 71 -8.7 -3.23853 | opp_overlap 592257, overlap 592255 TATATCGGTCAAGAA GCTGTTG CTA CAGCAGC TATTGCTTGCACAGG pdhA 592056 - 593078 + | pyruvate dehydrogenase E1 component alpha subunit TERM 792 593636 - 593613 - g 71 -8.2 -3.49858 | TGAATTAGACTACAA TCTTAAGGGA GAGG TCCCTTCAGA AGAATACCTGATCCC pdhB 593071 - 594057 + | pyruvate dehydrogenase E1 component beta subunit TERM 793 594347 - 594323 - g 73 -7.1 -4.23723 | opp_overlap 594323, overlap 594345 CAATATGATTTAAAA CAGCTCCTACC TTT GGAAGAAACTG TTGTTACAGATGCAG pdhC 594062 - 595351 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 794 595353 - 595371 + T 93 -11.8 -4.30987 | opp_overlap 595353 595356 595357 595361 TACTTCTCAATTAAA GAAGGGAA TGT TTCCCTTC TTTCTTCTAAGAAGT TERM 795 595371 - 595353 - T 90 -11.8 -3.90588 | opp_overlap 595353, overlap 595356 595357 595361 TACTTCTCAATTAAA GAAGGGAA TGT TTCCCTTC TTTCTTCTAAGAAGT TERM 796 595368 - 595356 - T 75 -7.7 -4.0825 | opp_overlap 595353, overlap 595353 595357 595361 TTCTCAATTAAAGAA GGGAA TGT TTCCC TTCTTTCTTCTAAGA TERM 797 595403 - 595357 - T 73 -9.4 -3.04468 | opp_overlap 595353, overlap 595356 595353 595361 TCTCAATTAAAGAAG GGAATGTTTCCCTTCTTTCTTC TAA GAAGTTGGTCGGGAAACATTCC AAATATTCGATGCAT glgP 597822 - 595378 - | glycogen phosphorylase CTLon_0497 597978 - 598328 + | hypothetical protein TERM 798 598376 - 598352 - T 75 -9.3 -3.31322 | gap 1 CCGAACGGTGTACAA GGAGGC-GGC GCAATT GCCTGCCTCC TACCTCTAGTCTTCT dnaA 599752 - 598382 - | chromosomal replication initiation protein TERM 799 599222 - 599241 + g 73 -5.8 -4.57341 | gap 1, opp_overlap 599221 599222 GTGTTCCGTAAATAG CTCTG-ATG TAA CATACAGAG TTTTTACACCAGCTT TERM 800 599447 - 599477 + g 73 -5.4 -4.72497 | opp_overlap 599446, overlap 599449 CATGTTCGGATCAAT GTCCCCATACTTCA TAG TGAAGTATGCAGTC TTTTCTTGCTGGATC oxaA 602192 - 599829 - | putative inner membrane protein translocase component YidC TERM 801 602139 - 602126 - G 73 -5.3 -4.73635 | GATAACCGAAGAAAA TTTGG CAGC CCAAA AATGCCGCGCTTACC TERM 802 602278 - 602267 - R 80 -3 -5.63103 | CCCTAATCAAAAAAA CTTT GCAG AAAG ACAAAACCTCTCCAA TERM 803 602428 - 602454 + r 71 -9.6 -2.6583 | overlap 602425 ATAACCATCCCCCCT CTCTACATCAAA AAG TTTAATGTAGAG TCGCTTTCAGATGTG lgt 603320 - 602502 - | prolipoprotein diacylglyceryl transferase TERM 804 603367 - 603350 - H 81 -3.5 -5.61881 | overlap 603344 TCTCAAAAAGAAAAA CTTTTCT AAAT AAAAAAG ACTATGCCAAAAATT TERM 805 603406 - 603381 - H 83 -7.7 -4.63928 | AGACTATGCCAAAAA TTTTTTGCTAG CAAT CTTGCAAAAAA GATCTTCGCACGGTT CTLon_0501 603571 - 604218 + | putative lipoprotein CTLon_0502 604222 - 604992 + | inner membrane protein CTLon_0503 605583 - 605200 - | hypothetical protein CTLon_0504 605772 - 607016 + | putative membrane transport protein TERM 806 607036 - 607048 + G 71 -4.8 -4.60808 | CCCTTTTTCTGGTTA GGAG TGAAC CTCC TTTGTATTTTTGTCC TERM 807 607904 - 607877 - g 73 -7.1 -4.14874 | AGAATAGTTCTAAAA TCGCCATTGTT TTAAAT AATAATGGCGA GCCTATGGGAGTTTT TERM 808 608125 - 608104 - g 83 -8.8 -4.15453 | CAACTCATGTTAAAA CTTCTGGA TACTCC TCCAGAAG TAGGCGCCTCTATCA CTLon_0505 607006 - 608220 + | hypothetical protein CTLon_0506 609348 - 608224 - | putative cysteine desulfurase TERM 809 609207 - 609218 + g 71 -4.4 -4.86731 | overlap 609190 TTGAAGTTTCTTTAA CCAA TTTT TTGG TTTTCTTTCCAAAAC CTLon_0507 610100 - 609354 - | protein phosphatase 2C CTLon_0508 610419 - 610910 + | hypothetical protein dnaQ 610919 - 611617 + | DNA polymerase III subunit epsilon CTLon_0510 611614 - 612384 + | hypothetical protein CTLon_0511 612377 - 612967 + | hypothetical protein CTLon_0512 614928 - 612988 - | ABC transporter, ATP-binding and membrane components accA 615868 - 614894 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 810 615773 - 615797 + gr 93 -2.9 -5.95539 | opp_overlap 615777, overlap 615777 TTTTTGAATCTCTGA AGAAGAAAGCA GGC TGTTTTCTTTA TTTTTTTCTTTAAAC TERM 811 615777 - 615793 + gr 86 -5.9 -5.36181 | opp_overlap 615777, overlap 615773 TGAATCTCTGAAGAA GAAAGCA GGC TGTTTTC TTTATTTTTTTCTTT CTLon_0514 617182 - 616001 - | hypothetical protein ihfA 617602 - 617300 - | integration host factor alpha-subunit amiA 618601 - 617822 - | N-acetylmuramoyl-L-alanine amidase TERM 812 617950 - 617962 + gr 75 -9.1 -3.66178 | opp_overlap 617937 617950, overlap 617937 AACGAGCATCTAAAA GAGCG GCT CGCTC TTTAGAATTGGAAAG TERM 813 617962 - 617950 - GR 83 -9.1 -4.2231 | opp_overlap 617937 617950, overlap 617937 AACGAGCATCTAAAA GAGCG GCT CGCTC TTTAGAATTGGAAAG TERM 814 617996 - 617981 - GR 70 -5.4 -4.46835 | overlap 617977 AGAATTGGAAAGAAA CCCTGT TTCC ACAAGG ACCGCAGGCATGGTT murE 619967 - 618516 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase pbp 622233 - 620290 - | penicillin-binding protein TERM 815 620913 - 620923 + g 74 -4.6 -4.83169 | overlap 620922 TCGATAAAGACCATT CGGG AGA TCCG TTTTTATGGAAACGT TERM 816 621135 - 621149 + g 70 -2.8 -5.06451 | ATCGATTACTGACAA TGTCTT TTA GAGGCA TTTTTTGCCGTCCTG TERM 817 621580 - 621607 + g 100 -12.8 -4.21936 | opp_overlap 621572 621581 621587, overlap 621581 GTCTAAACGGTTTAA AGGAGAACGCAA CAAC TTGCGTTCTCCA TTTTCCCCTTCTAAC TERM 818 621606 - 621581 - G 100 -16.3 -3.5936 | opp_overlap 621581 621580, overlap 621572 621587 TCTAAACGGTTTAAA GGAGAACGCAA CAAC TTGCGTTCTCC ATTTTCCCCTTCTAA TERM 819 621581 - 621606 + g 100 -16.3 -3.1268 | opp_overlap 621572 621581 621587, overlap 621580 TCTAAACGGTTTAAA GGAGAACGCAA CAAC TTGCGTTCTCC ATTTTCCCCTTCTAA CTLon_0519 622507 - 622220 - | hypothetical protein mraW 623409 - 622507 - | S-adenosyl-methyltransferase MraW CTLon_0521 623687 - 624253 + | hypothetical protein CTLon_0522 624260 - 624679 + | hypothetical protein TERM 820 624735 - 624751 + F 71 -3.1 -5.06089 | GAGATTCTCCTTCTA TTATTGA GTA TTAATAA TTTTGTTTCTGATTT TERM 821 625271 - 625285 + G 72 -7.2 -3.91084 | overlap 625256 TAAGCTTAATGGAGC TTATCG TTT CGATAA TTTCATTGAAGGTCC dnaA2 624921 - 626288 + | chromosomal replication initiation protein CTLon_0524 626340 - 626924 + | hypothetical protein CTLon_0525 627555 - 626896 - | hypothetical protein TERM 822 627898 - 627914 + G 75 -5.2 -4.89852 | TATAGGATCCGTCCT TTTTGC TGGAT GCAAAA TTTTTCTCCCTCTCC TERM 823 627954 - 627968 + G 89 -7.2 -4.93316 | GCTATGCTGTAGGAG GAACTT GCG AAGTTC TTTTTGCTATTATTC nqrB 627557 - 629068 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 824 629586 - 629600 + G 70 -7.2 -3.7732 | opp_overlap 629586 629585 629594 CAAAAAATCCAACAG CTATAG AAT CTATAG TTCTTCCTATAGAAG TERM 825 629852 - 629880 + G 90 -11.7 -3.67597 | AAAGGATCTGTATCT GCAGCATTAGGAG ACT CACCTAAAGCTGC TTCTTCCATCGACGG nqrC 629072 - 630022 + | Na(+)-translocating NADH-quinone reductase subunit C nqrD 630012 - 630653 + | Na(+)-translocating NADH-quinone reductase subunit D nqrE 630659 - 631393 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 826 631396 - 631412 + T 81 -10.1 -3.77206 | opp_overlap 631396 631395, overlap 631411 CAAGGCTTCATAAAT GGCGGTT AAT AGCCGCC TTTGCTAGGGTTCTA gcsH 631770 - 631417 - | glycine cleavage system protein H CTLon_0531 633862 - 631790 - | hypothetical protein TERM 827 632992 - 632971 - G 91 -8.1 -4.84311 | TTTTATATAACAAAA TTTCTCGAT ACAT ACCGAGAAA ATCAGACTCTTCTAC TERM 828 633132 - 633149 + g 80 -2.7 -5.56568 | opp_overlap 633132 CGAGCTTCTTTTAAA GAAGG CATCCCAA CCTTC TTTTTTTGCTCATCT TERM 829 633200 - 633176 - G 74 -7.9 -4.03183 | opp_overlap 633176 633178 ATCTATAAAACATAA CATTGCCTCTG TAA CAGAAGAAATG TACTTATCCCCAAAC TERM 830 633502 - 633480 - G 73 -2.7 -5.09762 | gap 1, overlap 633481 TCTGAAGAAATAAAA GGAGCATCGA ATCG CCGATAC-CC TTCGTAACTCCTCTC TERM 831 634041 - 634018 - R 75 -9.6 -3.26719 | opp_overlap 634014 TGGACAAAGACCTAA GGGAGGATTT GTAC AGATCCTCCC TCCCTATTAGAAGAG CTLon_0532 635481 - 634057 - | phospholipase D lplA 636206 - 635487 - | lipoate-protein ligase A TERM 832 637080 - 637102 + G 76 -9.9 -3.29511 | gap 1, opp_overlap 637074 637078, overlap 637101 ATGTTTAAAGAATCG CGCCTCGATC CAGT GATCG-GGCG TTCTGCAGAAGTCGA clpC 636471 - 639035 + | ATP-dependent Clp protease trmU 640092 - 639016 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 833 639106 - 639066 - G 74 -6.2 -4.41348 | gap 2, opp_overlap 639074 639091 CTCCTCCTAAACAAA TGTC-CCCCTGG-TAGAAAG CTA CCGTCTGTCCAGGGGTGACA GCTTTCACAGGGACA TERM 834 639297 - 639273 - G 84 -10.1 -3.85698 | overlap 639278 GCTCTTGTCGATAAA GTAAAGGATGA TCT TCACCCCTTAC AATGTAAACAATATT TERM 835 640640 - 640617 - g 82 -3.2 -5.54338 | gap 1, opp_overlap 640621, overlap 640623 CAACGAAAACAAAAA CAACTAGAAGC GTC GCTTCC-GTTA GATAATGCGACCGAG TERM 836 641286 - 641257 - g 71 -2.2 -5.15381 | gap 2, opp_overlap 641257 641262, overlap 641261 AAGATATTCAAAAAA CCAT-TA-GCCCAG ATGT CTGGGCCTCTATGG TTCATTACCAGCATC TERM 837 641432 - 641418 - g 73 -5.8 -4.42619 | opp_overlap 641424 GAAGATTTGACAAAA CAATAT GAT ATATTG AACGCAGCCTTTAAT CTLon_0536 640323 - 642017 + | hypothetical protein TERM 838 642075 - 642041 - T 100 -13.1 -5.06735 | opp_overlap 642047, overlap 642047 CATAAATGACAAAAA GAAAAAGGAGAGC TGTTGCTGT GCTCTCCTTTTTC TCTAAATATTCCTGA TERM 839 642047 - 642069 + T 79 -6.3 -4.99638 | opp_overlap 642041 642047 TGACAAAAAGAAAAA GGAGAGC TGTTGCTGT GCTCTCC TTTTTCTCTAAATAT TERM 840 642069 - 642047 - T 100 -6.3 -5.69262 | opp_overlap 642047, overlap 642041 TGACAAAAAGAAAAA GGAGAGC TGTTGCTGT GCTCTCC TTTTTCTCTAAATAT CTLon_0537 643249 - 642104 - | hypothetical protein TERM 841 642702 - 642718 + g 80 -8.7 -3.92542 | opp_overlap 642697 GAAAGAGAAGCTCGA GCAGCAG CTA TTGCTGC TTCTTTAGGACTCAA TERM 842 642766 - 642782 + g 70 -3.7 -4.81357 | GAGAAGTATTTACAG GCTTTTT CTT GAGAAGC TTTCTTTTATCATCT TERM 843 642992 - 642975 - G 73 -3.5 -4.94168 | overlap 642977 ATACAAGAAAAGAAA TCCTTTT TCTC AAAAGAA GCCTTCCATGCAGAT CTLon_0538 643983 - 643306 - | PTS family membrane transport protein IIA subunit TERM 844 643546 - 643524 - G 74 -4.8 -4.84311 | overlap 643525 TTTGAGATAAGAAAA CGGGAACAAT AAT ATCGTACCCA ACGTTAATCAAGAAG ptsN_2 644462 - 643986 - | PTS family membrane transport protein IIA subunit dut 644901 - 644464 - | deoxyuridine 5'-triphosphate nucleotidohydrolase accD 645864 - 644938 - | acetyl-CoA carboxylase subunit beta sodM 646555 - 645935 - | superoxide dismutase mrsA 648468 - 646687 - | phosphoglucomutase TERM 845 647130 - 647118 - G 74 -7.7 -3.91858 | opp_overlap 647117 CATAGACCTCATAAA GCTCT AAC AGAGC ATCTCGTAACGTACA CTLon_0544 649087 - 648620 - | hypothetical protein TERM 846 649854 - 649838 - g 75 -5.1 -4.8487 | GGATCAAAAAAAGAA GCAGAAA AAC TTGCTGC TAAACAGGCGTTATC rnc 649196 - 649891 + | ribonuclease III TERM 847 650742 - 650728 - g 80 -2.8 -5.55769 | overlap 650729 TTCTACAAGAAAAAA TTGTAG AAA CTACAG GCTCTACCATTATCC radA 649875 - 651239 + | DNA repair protein RadA hemC 651283 - 651942 + | porphobilinogen deaminase TERM 848 652693 - 652717 + T 100 -15.1 -5.59962 | opp_overlap 652693 AATCTAAGCCAAAAA GCCCTTTCCTT TAT GAGGAAAGGGC TTTTTATTTCTTTTA TERM 849 652717 - 652693 - T 100 -14.4 -4.75776 | opp_overlap 652693 AATCTAAGCCAAAAA GCCCTTTCCT TTATG AGGAAAGGGC TTTTTATTTCTTTTA pknD 655542 - 652738 - | serine/threonine-protein kinase valS 658376 - 655557 - | valyl-tRNA synthetase CTLon_0551 659018 - 658503 - | hypothetical protein atpK 659364 - 658939 - | V-type ATP synthase subunit K atpI 661375 - 659426 - | V-type ATP synthase subunit I TERM 850 660083 - 660093 + g 71 -3.2 -4.95302 | overlap 660076 660074 TTGGGCTAGAAGAAA CTCT TTA GGAG TTTTCTTCTCTTTAA TERM 851 660460 - 660443 - G 81 -5.5 -5.1286 | opp_overlap 660443, overlap 660437 GAAAAAGGAGAAAAA GACCCAT AATG AAGGGTC TTTATCCGTTGATGC atpD 661992 - 661381 - | V-type ATP synthase subunit D atpB 663293 - 661977 - | V-type ATP synthase subunit B TERM 852 662830 - 662863 + g 95 -7.6 -5.12707 | CGCATCAACAGCGCA TTATGATTTTCTCC AGAAGA GGAGAAAATCGGAA TTTTTTGAGATTTGA atpA 665071 - 663296 - | V-type ATP synthase subunit A TERM 853 663608 - 663584 - G 86 -8 -4.62069 | opp_overlap 663583 663586 CTCTGATTTCAAAAA GATTTCCATG TCTTC CATAGAAATC CCTTCTTCCCCTACG CTLon_0557 665865 - 665065 - | hypothetical protein TERM 854 665685 - 665671 - G 82 -5.7 -5.07652 | GGTCCCAAAAGAAAA GGGAA TCGAT TTCCC TGCCCAGAAAAAAGC TERM 855 665966 - 665949 - R 100 -8.4 -5.38951 | opp_overlap 665949 AACGCATACAAAAAA GCTCCG CGAACT CGGAGC TTCTATCGTCAACGA TERM 856 665949 - 665966 + r 71 -8.4 -3.54475 | opp_overlap 665949 AACGCATACAAAAAA GCTCCG CGAACT CGGAGC TTCTATCGTCAACGA atpE 666658 - 666032 - | V-type ATP synthase subunit E TERM 857 666903 - 666881 - g 71 -4.8 -4.65153 | overlap 666876 666897 CGAGAGAAACGAAAA GATCTCCATG TAT CAAGGAAACC CTCTCCTCGTTATGC CTLon_0559 666767 - 667477 + | hypothetical protein TERM 858 667487 - 667475 - T 80 -7.7 -4.4267 | opp_overlap 667470 667475 CTGCAAAATGGAAAA TAGCG GAA CGCTA TCCTCTATGATACAA CTLon_0560 667856 - 667485 - | hypothetical protein tal 668884 - 667901 - | transaldolase B TERM 859 668613 - 668584 - G 100 -9.3 -4.72007 | CTGTATTAAAAGAAA GCCGGGCATCAAT TTCT AATGATACCCGAC CAGGAACATGCTTTA TERM 860 668966 - 668945 - R 74 -9.5 -3.12378 | gap 1, opp_overlap 668943 668943 668946 AACGATACTATTCAA GGGGGTTATG ACT CAT-ACCCCC TCTCTTTCTCTAGTT TERM 861 668946 - 668966 + r 79 -9.7 -3.39968 | opp_overlap 668945, overlap 668943 668943 ACGATACTATTCAAG GGGGTTATG ACT CATACCCCC TCTCTTTCTCTAGTT rpoC 673186 - 668996 - | DNA-directed RNA polymerase subunit beta' TERM 862 672676 - 672709 + g 71 -7 -4.1552 | gap 1, opp_overlap 672679, overlap 672679 TACCCCATTTTTCAA CAACTTCTCGAT-AT TTCGC ATCATTGAGAAGTTG TTTCTTCACGAGATC rpoB 676969 - 673211 - | DNA-directed RNA polymerase subunit beta TERM 863 676912 - 676930 + g 74 -4.6 -4.86385 | CTTCGACAAGATTAG GAAGATCT AAA ATATCTTC TTTCTTTTTGACGCT TERM 864 677197 - 677166 - R 83 -3.8 -5.5112 | gap 1, opp_overlap 677175, overlap 677167 TCCATTAAGAAAAAA CCATTGC-AACAGAA ATA TTCTGTTTGCGATGC CAAACACTAAAAGTT TERM 865 677196 - 677167 - R 72 -7.3 -3.89587 | gap 1, opp_overlap 677175, overlap 677166 CCATTAAGAAAAAAC CATTGC-AACAGAA ATA TTCTGTTTGCGATG CCAAACACTAAAAGT rplL 677722 - 677330 - | 50S ribosomal protein L7/L12 rplJ 678272 - 677754 - | 50S ribosomal protein L10 rplA 678992 - 678294 - | 50S ribosomal protein L1 rplK 679440 - 679015 - | 50S ribosomal protein L11 TERM 866 679228 - 679211 - G 71 -8.5 -3.45366 | opp_overlap 679220, overlap 679220 TTTTTAATTAACGAA GAAACAG GAGA CTGTTTC ATTACAAAAGAAAAA nusG 680094 - 679546 - | transcription antitermination protein NusG secE 680346 - 680098 - | preprotein translocase subunit SecE TERM 867 680473 - 680452 - R 90 -12.3 -3.74345 | AGCTACACACCCAAA GGCAAGGCT TTTC AGCCTCGCC AACATATCACTTAAT tufA 681673 - 680489 - | elongation factor Tu infA2 682242 - 682021 - | translation initiation factor IF-1 TERM 868 682559 - 682536 - H 82 -8.2 -4.35116 | opp_overlap 682554 682556, overlap 682556 TACTTCACAGTAAAA CTCCCCATTC TTCC GAATGAGAAG CTTCGCTTCTGTTTT TERM 869 682556 - 682568 + H 70 -7.7 -3.63744 | opp_overlap 682536 682556, overlap 682554 CATTCTTCCGAATGA GAAGC TTC GCTTC TGTTTTAGAAAAACA CTLon_0572 682653 - 683564 + | hypothetical protein CTLon_0573 683561 - 684007 + | hypothetical protein TERM 870 684045 - 684003 - T 100 -11.4 -4.56775 | opp_overlap 684013 684015, overlap 684008 684011 ATCTGGCTCGAAAAA CCTAATGAGATAGCCAATGA TTC TCATTGGCTATCTCCTCCTG CTCACAAGACTACTT TERM 871 684040 - 684008 - T 100 -16.5 -3.45031 | opp_overlap 684013 684015, overlap 684003 684011 GCTCGAAAAACCTAA TGAGATAGCCAATGA TTC TCATTGGCTATCTCC TCCTGCTCACAAGAC TERM 872 684037 - 684011 - T 100 -16.8 -2.86773 | opp_overlap 684013 684015, overlap 684008 684003 CGAAAAACCTAATGA GATAGCCAATGA TTC TCATTGGCTATC TCCTCCTGCTCACAA TERM 873 684013 - 684035 + T 93 -13.6 -2.83715 | opp_overlap 684011 684008 684003, overlap 684015 AAAAACCTAATGAGA TAGCCAATGA TTC TCATTGGCTA TCTCCTCCTGCTCAC TERM 874 684015 - 684033 + T 82 -11.8 -2.96692 | opp_overlap 684011 684008 684003, overlap 684013 AAACCTAATGAGATA GCCAATGA TTC TCATTGGC TATCTCCTCCTGCTC TERM 875 685392 - 685374 - T 75 -3.1 -5.252 | overlap 685377 TACTGTTACAAAAAA TGATGGA TTAAT TCCAACA ACCCGAATACGAGCA TERM 876 686149 - 686182 + T 100 -16.9 -4.02022 | opp_overlap 686149 TCGAGTCAAAAAAAA GCTCTTTGCTAGACC TTTA GGTCTAACAAAGAGC TTTATCATCGTTCGC TERM 877 686182 - 686149 - T 100 -19.1 -5.81412 | opp_overlap 686149 TCGAGTCAAAAAAAA GCTCTTTGCTAGACC TTTA GGTCTAACAAAGAGC TTTATCATCGTTCGC CTLon_0576 686402 - 686220 - | hypothetical protein TERM 878 686651 - 686631 - R 86 -9 -4.59773 | opp_overlap 686631 686622 GCCCATGTCTAAAAA GCCCTCTG TAGAC CAGAAGGC TTGCTTTGACTTTGT trpC 687751 - 687125 - | N-(5'-phosphoribosyl)anthranilate isomerase TERM 879 687246 - 687228 - G 86 -11.8 -3.15013 | overlap 687226 687232 ACCCCAGAAGACACA TCAATCCC CCT GGGATTGA GAAGACTGATACCTT TERM 880 688362 - 688352 - g 76 -6.8 -4.57569 | GTACTTGCTGAAAAA GCTG CTG CAGC TATCCATAGTGGAAT tpiS 687947 - 688771 + | triosephosphate isomerase xseA 688785 - 690335 + | exodeoxyribonuclease VII large subunit xseB 690319 - 690537 + | exodeoxyribonuclease VII small subunit TERM 881 690619 - 690594 - g 100 -14.8 -2.89191 | opp_overlap 690586 GGACACCGTTATACA GCGCCTTCTG GTTTTA CAGAAGGCGC TTGAGGACTGTCATT CTLon_0581 690544 - 690816 + | hypothetical protein TERM 882 691169 - 691179 + G 87 -8.2 -4.53439 | TTTCTCTGGTCATGC GGGC AAT GCCC TTTCTTTAGCTTTAG dxs 690813 - 692735 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 883 692732 - 692718 - f 70 -8.6 -3.06183 | CCCATTCCTATCGAA CGCTTT TTT AAAGCG TAGCGATTGCGGTTG pykF 692832 - 694289 + | pyruvate kinase TERM 884 694749 - 694718 - g 80 -3.8 -5.31059 | gap 1, overlap 694706 ACAGTAAGGAAAAAA TCCTTTCTGAAATAG CTG CCATTCCAGAT-GGA ACTCAACTGACTTTG TERM 885 695453 - 695441 - g 76 -2.7 -5.28826 | AAATTGGAGAAAAAA TTCGA TTT TCAAA TAAGCCTGCTCGCTA TERM 886 695585 - 695595 + G 70 -5.4 -4.45807 | ACTTTCAACAAATGT CTCT TCA AGAG TTATTTATTTTCCTG TERM 887 697216 - 697228 + G 72 -7.7 -3.90045 | GGTCCATCCGCTTCC GGGAA ACA TTCCC TTGTATTTGATATTC TERM 888 697386 - 697376 - g 89 -6.8 -5.36441 | TCGCGATAGAAAAAA CGAG CGC CTCG AGAAATTCCAATCAT TERM 889 697571 - 697590 + G 73 -2.8 -5.1523 | overlap 697582 TAACGATTACTGTTC CTTTCCCT AAAG AGGAAGAG TTTTTCTCTTATACG uvrA 694312 - 699672 + | excinuclease ABC subunit A dnaX 699890 - 701290 + | DNA polymerase III subunits gamma and tau CTLon_0586 701283 - 701573 + | hypothetical protein ptsI 703298 - 701583 - | phosphoenolpyruvate-protein phosphotransferase TERM 890 701772 - 701749 - G 73 -8.9 -3.54256 | opp_overlap 701748, overlap 701747 AGTCCTAAAAACATA GGCAGAAGA GCAGGA TCTCCTGCC ATCTCTCCACATACA ptsH 703627 - 703298 - | phosphocarrier protein HPr CTLon_0589 704226 - 703765 - | hypothetical protein TERM 891 704141 - 704129 - G 95 -3.3 -6.02914 | opp_overlap 704130, overlap 704130 TGGATAGAAAAAAAA TGACG ATA CGTCT CATCTCCTAACTTAG TERM 892 704140 - 704130 - G 71 -6.8 -4.20122 | opp_overlap 704130, overlap 704129 GGATAGAAAAAAAAT GACG ATA CGTC TCATCTCCTAACTTA CTLon_0590 704465 - 704283 - | hypothetical protein CTLon_0591 704510 - 706039 + | hypothetical protein TERM 893 706042 - 706097 + T 76 -10.7 -2.64318 | gap 1, opp_overlap 706057, overlap 706057 GATTATTCTCTAAAT CTGTTCTAAAAAAAAGCGCTCCT-GT TTATC ACTAGGAGCGCTTTTTGTTGGAAATG TCACTTGTATAGTCT TERM 894 706057 - 706082 + T 93 -9.8 -5.07486 | gap 1, opp_overlap 706057, overlap 706042 CTGTTCTAAAAAAAA GCGCTCCT-GT TTATC ACTAGGAGCGC TTTTTGTTGGAAATG TERM 895 706082 - 706057 - T 100 -9.8 -5.75342 | gap 1, opp_overlap 706057 706042 CTGTTCTAAAAAAAA GCGCTCCT-GT TTATC ACTAGGAGCGC TTTTTGTTGGAAATG CTLon_0592 708147 - 706111 - | 2-oxoisovalerate dehydrogenase alpha subunit TERM 896 706157 - 706171 + g 79 -8.6 -4.15453 | AAGATTTTTTCTTTT TGAGGT AGC ACCTCA TTTTCCAATACCTTA TERM 897 706220 - 706194 - G 73 -10.2 -2.56177 | overlap 706197 706199 706210 ATACCTTAGAGTAAG GAACAGGAGCAT GCA ACGCTCCTATCC GCTTGATAGGAGCGT TERM 898 706217 - 706197 - G 71 -8.3 -3.43071 | overlap 706194 706199 706210 CCTTAGAGTAAGGAA CAGGAGCAT GCA ACGCTCCTA TCCGCTTGATAGGAG TERM 899 706215 - 706199 - G 71 -8.7 -3.28487 | overlap 706197 706194 706210 TTAGAGTAAGGAACA GGAGCAT GCA ACGCTCC TATCCGCTTGATAGG TERM 900 706234 - 706210 - G 100 -14.4 -3.11459 | overlap 706199 706197 706194 AACAGGAGCATGCAA CGCTCCTATC CGCTT GATAGGAGCG TCAAGATATCTGTAA dnaJ 709360 - 708182 - | heat shock chaperone protein TERM 901 708215 - 708245 + g 85 -9.2 -4.1585 | AAAAAAACCTTTGAT TTTGTCTAAGAAAC TCC GTTTCTTAGGGAAA TTTTCAGCCTTCTCC TERM 902 709288 - 709300 + g 80 -6.3 -4.86861 | GGTACTTTACAGCGA GCTTA CGG TAAGC TTTCTTTATTTCTTC rpsU 709565 - 709389 - | 30S ribosomal protein S21 CTLon_0595 710395 - 709763 - | O-sialoglycoprotein endopeptidase TERM 903 710366 - 710354 - G 73 -5.5 -4.65838 | GACATAGGCCAAAAA CGGCT GAG AACCG GAAGTGTCTACAATA lon 710705 - 713164 + | ATP-dependent protease La TERM 904 713169 - 713198 + F 86 -11.5 -3.78442 | opp_overlap 713167 713166, overlap 713170 713192 713192 CTGGGGTTTAAATCG TGTTCTCTGAGCT GTAA GGCTCAGAGAACC TTCTCTCTTATTCTC TERM 905 713170 - 713197 + F 100 -15 -2.8598 | opp_overlap 713167 713166, overlap 713169 713192 713192 TGGGGTTTAAATCGT GTTCTCTGAGCT GTAA GGCTCAGAGAAC CTTCTCTCTTATTCT TERM 906 713476 - 713491 + G 70 -5.4 -4.5493 | TTAATCTCTTTAGCC GTAGGT TCCT GCCTAC TTGTTTTGTTTCCAT CTLon_0597 713266 - 713631 + | hypothetical protein TERM 907 713909 - 713887 - f 82 -9.2 -4.16943 | CCCTACATTCCAAAA CCTCTTACCT TGC AAGCAAGAGG AAGTCGCTTGTTAGG CTLon_0598 713974 - 714888 + | ribonuclease Z TERM 908 715535 - 715523 - g 95 -7.7 -5.22039 | GGGAAAGGGAAAAAA GAACG AAT CGTTC CTATGACAAAGGTAG xerC 714950 - 715897 + | site-specific tyrosine recombinase XerC CTLon_0600 715951 - 717540 + | ABC transporter, ATP-binding component CTLon_0601 717576 - 718166 + | Maf-like protein TERM 909 718615 - 718628 + G 73 -5.3 -4.73973 | opp_overlap 718615 TATGAAAAATAGCAA GGTAA GTGA TTACC TTTATTCTTTTATCT TERM 910 719826 - 719806 - g 77 -4.7 -4.92783 | opp_overlap 719808 719811, overlap 719808 AACCCATTACAAAAA TATCCCGAT CTT ATCAGGATT GTTAATGAGAATAGT TERM 911 719824 - 719808 - g 73 -7.3 -4.08042 | opp_overlap 719808 719811, overlap 719806 CCCATTACAAAAATA TCCCGAT CTT ATCAGGA TTGTTAATGAGAATA CTLon_0602 718148 - 719848 + | putative lipoprotein TERM 912 720085 - 720101 + G 73 -8.7 -3.45033 | opp_overlap 720085 720084, overlap 720087 TTGTGGGATCAAAAT CGTTGCT CAT GGCAACG TTATGGTCAATTATC TERM 913 720917 - 720899 - g 77 -8.2 -4.00411 | opp_overlap 720899 720902, overlap 720902 CAAAATGTTAAACAA GAATTGCC TCA AGCAATTC TTCATCACCGACCAG CTLon_0603 719855 - 721957 + | hypothetical protein TERM 914 721967 - 721993 + T 100 -8.1 -6.17268 | opp_overlap 721967 GGATAACAAAAAAAA CCAAACTAGTT TGTCC AACCAGTTTGG TTTTTTTTCTTATCG TERM 915 721993 - 721967 - T 100 -10.3 -6.17268 | opp_overlap 721967 GGATAACAAAAAAAA CCAAACTAGTT TGTCC AACCAGTTTGG TTTTTTTTCTTATCG secG 722339 - 722031 - | preprotein translocase subunit SecG def 723040 - 722495 - | peptide deformylase ksgA 724148 - 723315 - | dimethyladenosine transferase CTLon_0607 725225 - 724164 - | hypothetical protein CTLon_0608 727644 - 725530 - | hypothetical protein TERM 916 726684 - 726668 - G 88 -6.6 -5.24799 | opp_overlap 726670 TCAGAAAGATAAAAA GATCCT GATTT AGGATC CGTTAGCTCTTTAAT TERM 917 727989 - 728003 + H 71 -3.5 -5.15634 | TTTTACCTTTATTAG GCGTG GTAAA TACGC TTTTTTGGTAAAATG TERM 918 728019 - 728056 + H 78 -10.7 -3.16055 | gap 1, opp_overlap 728018 728021, overlap 728022 728032 728055 TTTTTTGGTAAAATG GAG-GGGTTTGGAGGAAG AGA CTTCTTCTAATCCCTCTC TTCCTAAAGAATTTA TERM 919 728022 - 728052 + H 80 -11.2 -3.12895 | opp_overlap 728021 728018, overlap 728019 728032 TTTGGTAAAATGGAG GGGTTTGGAGGAAG AGA CTTCTTCTAATCCC TCTCTTCCTAAAGAA CTLon_0609 728101 - 728433 + | hypothetical protein TERM 920 728819 - 728807 - T 74 -9.1 -3.40403 | opp_overlap 728804 728807 GTCTCCTCACTAGAA CGCCA GTC TGGCG TCATCTTTATAGAAG CTLon_0611 729643 - 729053 - | putative inner membrane protein TERM 921 729796 - 729763 - R 78 -3.1 -5.35354 | gap 1, overlap 729766 729767 TACAGAAGGAAAAAA GCAGCCGCACCATAAT ATA AATATGGCGCGAA-GC TTTCTGGAAACGATC CTLon_0612 730521 - 729895 - | hypothetical protein TERM 922 730597 - 730562 - R 100 -12.1 -5.08178 | ATATAGACACAAAAA CCCTTTATTACCTCT GTAAAA AGACGTAATAAAGGG CACAGTTCATCTCAT TERM 923 730644 - 730620 - R 82 -10.8 -3.33162 | CATCTCATTTTAGAA GACAGATAGG CTTTT CCTATCTGCC AAAATCAAACTTATT dapA 731543 - 730683 - | dihydrodipicolinate synthase TERM 924 731057 - 731042 - G 74 -4.7 -4.7497 | overlap 731050 CTGACTCAGCAAAAA GCTCA CAAGCC TGAGC AGACCCTCCAGAATC lysC 732848 - 731553 - | aspartate kinase TERM 925 731697 - 731654 - G 73 -5.4 -4.67608 | gap 1, overlap 731655 GACTCCAACATAAAA CTGGAGTTCTGTGTAGAGCCT CAA AGACTCTAGACATA-CTCCAT GAAGCTAGCTTCGCT TERM 926 731696 - 731655 - G 71 -8.9 -3.39842 | gap 1, overlap 731654 ACTCCAACATAAAAC TGGAGTTCTGTGTAGAGCCT CAA AGACTCTAGACATA-CTCCA TGAAGCTAGCTTCGC TERM 927 731908 - 731885 - G 86 -9 -4.34267 | gap 1, opp_overlap 731884 731880, overlap 731887 731905 GTACACAACCCAAAA CATCCTCTAGT CTC ACTAGAGGA-G AATTGTATTCTACAA TERM 928 731907 - 731887 - G 100 -12.7 -3.76769 | opp_overlap 731884 731880, overlap 731885 731905 ACACAACCCAAAACA TCCTCTAGT CTC ACTAGAGGA GAATTGTATTCTACA asd 733845 - 732841 - | aspartate-semialdehyde dehydrogenase dapB 734616 - 733855 - | dihydrodipicolinate reductase TERM 929 734249 - 734226 - G 73 -5.2 -4.64144 | opp_overlap 734228, overlap 734217 734228 AAGAAGTGCTAAAAA GTTTTGCAGC AAAA GCTGCTAATC GCTTTTGTACATACG CTLon_0617 736520 - 734793 - | putative integral membrane protein TERM 930 735508 - 735492 - G 83 -9.5 -3.99374 | TGCTAGCAATAATAA TCCTGAT AAA ATCAGGA TCCGCTGTTGTTTCT TERM 931 735946 - 735962 + g 78 -2.2 -5.47218 | opp_overlap 735946 TCTTCTGGAGTAAGA GCTTCA CCCGA TGCAGC TTTTTTTGACTGGAA TERM 932 736278 - 736255 - G 73 -5.3 -4.60924 | GAAATTCCTGAAAAA GCAATCGCT AAAACA ATCGATTGC GGAACTCCAGGAGCT TERM 933 737763 - 737744 - gH 80 -4.9 -5.10029 | overlap 737745 ATGAATTGCAAAAAA TGGGTGG TTCTGT CCACCCT ACTCGTGACGGTCTA TERM 934 737762 - 737745 - gH 73 -8.4 -3.64933 | overlap 737744 TGAATTGCAAAAAAT GGGTGG TTCTGT CCACCC TACTCGTGACGGTCT aroA 736690 - 738012 + | 3-phosphoshikimate 1-carboxyvinyltransferase aroL 737954 - 738508 + | shikimate kinase TERM 935 739181 - 739223 + G 100 -16.5 -3.59979 | opp_overlap 739172 739173 TGGAAAGCTTCCAGC TCTTTTAGCTGCAGGCATG ATGAG CATCCCTGCGGCTAAAGGA TTTGAAATAGGAGCC aroC 738501 - 739574 + | chorismate synthase TERM 936 740198 - 740183 - g 80 -2.6 -5.41746 | gap 1, opp_overlap 740184 740186, overlap 740186 AATGCTTTAAAAAAA GAAGACA AGC TGTCT-C TTCTTATCAAAAAGA TERM 937 740196 - 740186 - g 75 -5.4 -4.79949 | opp_overlap 740184 740186, overlap 740183 GCTTTAAAAAAAGAA GACA AGC TGTC TCTTCTTATCAAAAA aroB 739571 - 740692 + | 3-dehydroquinate synthase aroE 740673 - 742115 + | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein TERM 938 742810 - 742792 - g 95 -3.1 -5.95539 | opp_overlap 742794, overlap 742794 CTGTAAACAAAAAAA CATCCCT TATCT AGGGATT GTTTATACTGCCTCT TERM 939 742808 - 742794 - g 75 -5.7 -4.61687 | opp_overlap 742794, overlap 742792 GTAAACAAAAAAACA TCCCT TATCT AGGGA TTGTTTATACTGCCT CTLon_0623 742157 - 742942 + | hypothetical protein TERM 940 743686 - 743713 + G 70 -9.3 -2.89564 | gap 1, opp_overlap 743684 743683 TTCCCAAATGAACGG GTGAGT-CTGAC AATTG GTCAGTACTCAC TCTATGCAATAGACG TERM 941 744277 - 744310 + G 70 -5.3 -4.46112 | gap 1, opp_overlap 744280, overlap 744280 TACGAAACTGTAATC GA-AGGGTTTGCAACT ATC GGTTGCGGCCCCTATC TTTCTTTCGCTCCAG CTLon_0624 743083 - 744411 + | hypothetical protein TERM 942 745192 - 745221 + G 73 -9.9 -3.06492 | opp_overlap 745192 GTCTTCCTCAAAATA TGGCGGCCTCTGC AAGT GCGGGGGCGGTCA TGTTAGCGTGGATGC TERM 943 745238 - 745251 + G 74 -6.7 -4.25873 | GTTAGCGTGGATGCT TTCCG GAAT CGGAA TATTTTTTATAGCAA TERM 944 746444 - 746427 - g 73 -7.1 -4.17417 | opp_overlap 746430, overlap 746430 746438 GGAATCAGACATAAA CAAGAAA AAAC TTTCTTG AATCGTAAAGAAATC CTLon_0626 745083 - 746534 + | arginine/ornithine antiporter TERM 945 746582 - 746612 + F 100 -12.8 -4.40333 | opp_overlap 746582 746581 TTATCTTTTCAAAAG GAACTGGTTCTTTT TCA AAGAGAATCAGTTC TTTCTATTCTTTAAA TERM 946 747230 - 747245 + G 70 -5.4 -4.47328 | overlap 747231 GCTGATCGATGACAT TTCAGC AATC GCTGAG TTTTATGATCACATT CTLon_0627 746706 - 747764 + | putative oxidoreductase TERM 947 747765 - 747797 + T 79 -4.8 -5.26875 | overlap 747752 747766 747767 GAGGGAGCAGCCTAA CTCTCCCCTCTCTT CTTAA AAAAGAGGGGAGCC TTTTTTCCTTACAAA TERM 948 747766 - 747796 + T 75 -8.3 -3.75402 | overlap 747752 747765 747767 AGGGAGCAGCCTAAC TCTCCCCTCTCTT CTTAA AAAAGAGGGGAGC CTTTTTTCCTTACAA TERM 949 747767 - 747795 + T 81 -11.8 -2.84518 | overlap 747752 747766 747765 GGGAGCAGCCTAACT CTCCCCTCTCTT CTTAA AAAAGAGGGGAG CCTTTTTTCCTTACA mdhC 748786 - 747806 - | malate dehydrogenase TERM 950 747891 - 747875 - G 74 -7.9 -3.91897 | opp_overlap 747879, overlap 747879 TTTCCCACGGATAAA GGCATCC CAA GGAAGCC CTGGAATCACTTCAT TERM 951 748327 - 748286 - G 76 -9.7 -3.32844 | gap 1, opp_overlap 748283 TGCTCTATGCGATAA CATGCTATGCATACGATT CTGGTCC AATCGTA-GCATCGCATG AAAGTTCTTTCTCAA TERM 952 748902 - 748884 - R 72 -6 -4.46212 | opp_overlap 748883 GTTTGGATGATAAAA GAATCAAG TAC CTAGATTC CTTAGTAAAAGCTTT TERM 953 748955 - 748930 - R 100 -13.5 -5.75342 | opp_overlap 748913, overlap 748913 TTTTGGCAAAAAAAA GCTCATCTATT TTTC AATAGATGAGC CGACCTTAACTGATA ltuA 749116 - 748976 - | late transcription unit A protein pgi 750808 - 749231 - | glucose-6-phosphate isomerase TERM 954 750836 - 750850 + r 74 -5 -4.94972 | GAGGAAATGTGATAC GAGAGA CCT TCTTTC TTTTTACTTGTACTA CTLon_0631 752264 - 750921 - | putative nucleotide-binding protein TERM 955 751812 - 751801 - G 73 -7.2 -4.20367 | CGTGGTAATAAATAA CGCG CTTG CGCG AGCTCTACCTGTAAT phnP 753077 - 752277 - | metal-dependent hydrolase TERM 956 752909 - 752925 + g 77 -3.7 -5.09895 | TTCTAAGATCTGGAC CTGTATC AAT GATAAAG TTTTTTCCCTGACTC TERM 957 753039 - 753006 - G 70 -7.3 -3.87364 | opp_overlap 753015, overlap 753007 CTCACAAGAACAGAA GGGCACAGGGATTCC TTCC GGATCTCCTGTGCCT AAAAAAACAATCTTC TERM 958 753038 - 753007 - G 79 -10.8 -2.91696 | opp_overlap 753015, overlap 753006 TCACAAGAACAGAAG GGCACAGGGATTCC TTCC GGATCTCCTGTGCC TAAAAAAACAATCTT artJ 753879 - 753106 - | arginine transport substrate-binding protein TERM 959 753665 - 753637 - G 78 -8.9 -3.75437 | AATGAGTGCATCAAA GGAAAACTCCCGA ACG TCAAGCGTTTTCC CCAGCTTGTTACTAA aroG 754784 - 753948 - | 3-deoxy-7-phosphoheptulonate synthase TERM 960 754910 - 754882 - R 100 -14.7 -5.63103 | opp_overlap 754882 TTTCAATGAAAAAAA CGCCCTCTTCTCT TGA AGAGAAGAGAACG TTTAATGATGCTATT TERM 961 754882 - 754910 + r 83 -10.3 -3.81689 | opp_overlap 754882 TTTCAATGAAAAAAA CGCCCTCTTCTCT TGA AGAGAAGAGAACG TTTAATGATGCTATT CTLon_0635 755112 - 754921 - | hypothetical protein TERM 962 755207 - 755178 - H 75 -2.3 -5.42198 | overlap 755198 TCTTAAAAAATAAAA TTAAATTCAAATG AAAA CAATTTAATTTAA AACCATTAAATTCAT TERM 963 755257 - 755233 - H 70 -5.9 -4.21607 | opp_overlap 755240, overlap 755218 TTCATTGAAGACAAA GAAAAACTTTT GTT AAAATTTTTTC GCTATACCGCAAAAT TERM 964 755240 - 755250 + H 70 -2.6 -5.1287 | opp_overlap 755233 AAGACAAAGAAAAAC TTTT GTT AAAA TTTTTTCGCTATACC CTLon_0636 755295 - 756026 + | hypothetical protein CTLon_0637 757656 - 756037 - | hypothetical protein TERM 965 756259 - 756248 - G 71 -3 -5.00616 | overlap 756221 TCGCGTTGCAAAAAA GAAA GAGC TTTC TCTAAGGCAAACGCA TERM 966 757660 - 757613 - G 71 -4.4 -4.89852 | gap 2, overlap 757617 CGATACTCACAAAAA CGC-ATTCGTTGT-TGGATGGA ATTAGA TCCATCCACACAACACATAACG AGCAGATATACTATG CTLon_0638 758006 - 757671 - | hypothetical protein CTLon_0639 758872 - 758003 - | hypothetical protein TERM 967 761063 - 761049 - g 75 -2.1 -5.28942 | gap 1 TACTGGAAAGAAAAA GT-GGC CCAC GCCTAC GAGATCAACCTCAAA CTLon_0640 759159 - 761234 + | hypothetical protein CTLon_0641 761595 - 761248 - | hypothetical protein TERM 968 762338 - 762357 + G 70 -3.6 -4.79752 | gap 1 GGAAAACGTGTTGGC TCTGCTACC TTC GGTGG-AGA TTTTATCTTCTTACG TERM 969 762470 - 762481 + G 78 -4.4 -5.24531 | CCAGAAGCTTGCATG GTCA ACTC TGAC TTTTTTGTCGCCGCT TERM 970 762615 - 762645 + G 70 -5.4 -4.42238 | AAAAACGTTATAATC GAAGCGATGAAGCC GTC GATTTCTTTGCTTC TTTTCGTTACACTCC CTLon_0642 761777 - 763003 + | hypothetical protein TERM 971 763039 - 763053 + F 83 -8.6 -4.20368 | opp_overlap 763041 AAATTACGCTGGACA GATGAG AGT CTCATC TTTATATTACCGTCC TERM 972 764118 - 764134 + G 73 -3.7 -4.93595 | opp_overlap 764118 764120, overlap 764120 ACCCACTCAAGCGAA CATCTCT GAT AGAGATC TTTTTGACTTTTTCT dapL 763111 - 764295 + | L,L-diaminopimelate aminotransferase CTLon_0644 764303 - 765310 + | ABC transporter substrate-binding component CTLon_0645 766449 - 765319 - | hypothetical protein TERM 973 767075 - 767059 - g 70 -7.3 -3.84825 | TCCACCTATACCAAA TCGGAAC CAA ATTCCGA GATGAAATCCGACCT TERM 974 767442 - 767453 + G 74 -4.4 -5.00884 | opp_overlap 767442 ATTCGAACAATTGAA GACT TAGA AGTC TTTTTTAACACCCCT TERM 975 767968 - 767958 - g 71 -6.8 -4.13805 | AAAAATGGAGATAAA CAGC TTT GCTG GATGGGGACATATGG TERM 976 768369 - 768347 - g 100 -10 -4.56597 | TTGGTGCTCTAAAAA TCTTCCTTGT CAT ACAAGAAAGA TCCCTCCACTCCGAG proS 766650 - 768395 + | prolyl-tRNA synthetase CTLon_0647 768464 - 769642 + | heat-inducible transcription repressor grpE 769639 - 770211 + | HSP-70 cofactor dnaK 770237 - 772219 + | molecular chaperone DnaK TERM 977 772240 - 772275 + F 100 -6.8 -5.75945 | opp_overlap 772247, overlap 772241 772242 TTTATTCATCTTCCT TAAGCAAGAGCCTCTT GAAA AAGGGGCTCTTGCAGC TTTTTTTTAAAAAAT TERM 978 772241 - 772274 + F 85 -10.3 -4.04482 | opp_overlap 772247, overlap 772240 772242 TTATTCATCTTCCTT AAGCAAGAGCCTCTT GAAA AAGGGGCTCTTGCAG CTTTTTTTTAAAAAA TERM 979 772242 - 772273 + F 95 -13.8 -3.01966 | opp_overlap 772247, overlap 772241 772240 TATTCATCTTCCTTA AGCAAGAGCCTCTT GAAA AAGGGGCTCTTGCA GCTTTTTTTTAAAAA TERM 980 772268 - 772247 - f 72 -8.7 -3.33815 | opp_overlap 772242 772241 772240 ATCTTCCTTAAGCAA GAGCCTCTT GAAA AAGGGGCTC TTGCAGCTTTTTTTT TERM 981 772555 - 772539 - g 77 -3.8 -5.21459 | overlap 772552 AAAAACAAAAAGAAA TTTCTA AAAAA TAGAAA GCAGGTTCTGGTTCC vacB 772512 - 774596 + | exoribonuclease II CTLon_0651 774852 - 775616 + | hypothetical protein TERM 982 775644 - 775655 + T 74 -5.8 -4.57073 | opp_overlap 775642 775651 775652 AAGAGTAAGGCAACC GCTG AAAC CAGC TTTTTAAAAAAGATG TERM 983 775817 - 775799 - T 74 -6.1 -4.61633 | overlap 775816 AGACAGGCTGAAAAA TCTTACT TTAGG AGTAAGA GCTGCTAGGGAAACC TERM 984 775818 - 775840 + T 70 -8.5 -3.29263 | gap 1, opp_overlap 775816 775818 775819, overlap 775818 ACTTTAGGAGTAAGA G-CTGCTAGG GAAA CCTAGCAGAC TTGTAAACCCCATCT TERM 985 775839 - 775818 - T 70 -8.7 -3.17229 | opp_overlap 775818 775818, overlap 775816 775819 ACTTTAGGAGTAAGA GCTGCTAGG GAAA CCTAGCAGA CTTGTAAACCCCATC TERM 986 775838 - 775819 - T 85 -12.2 -2.50016 | opp_overlap 775818 775818, overlap 775818 775816 CTTTAGGAGTAAGAG CTGCTAGG GAAA CCTAGCAG ACTTGTAAACCCCAT TERM 987 775892 - 775871 - T 73 -3.8 -5.1485 | opp_overlap 775871 GAAGCAAGAGAAAAA GTTATTTG TTTCTG CAAACAAC CTTTCTAACGAAAGG TERM 988 775907 - 775892 - T 74 -7.6 -3.90744 | TGTTTCTGCAAACAA CCTTTC TAAC GAAAGG CACAGGCTTTTTCAT TERM 989 776019 - 776030 + T 100 -5.8 -5.89921 | overlap 776016 GAATCCGGCTTACTC GCTC TTCC GAGC TTTTTTTATTATAAT CTLon_0652 777025 - 776039 - | carbohydrate isomerase sucB 778223 - 777057 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 990 778457 - 778436 - R 93 -10.9 -4.91429 | opp_overlap 778440 AAACCTTAAAGAAAA CGAAGAGAG AAAA CCCTCTTCG TTAAAAGATCTCTAA gltT 779707 - 778469 - | Sodium:dicarboxylate symport protein CTLon_0655 780813 - 779704 - | tetraacyldisaccharide 4'-kinase TERM 991 780219 - 780237 + g 72 -7.4 -4.07568 | TCGCCAATCTTTCTG GGAAGTCT CGA AGTCTTCC TTTTGGGAAAAAAGA TERM 992 780977 - 780960 - R 83 -7.1 -4.99972 | overlap 780964 ATAAAACATTAAAAA TCAAGTT TCAA AACTTGA ATCATAAAAGATTTC CTLon_0656 781788 - 780979 - | 23S rRNA methyltransferase TERM 993 781061 - 781083 + g 71 -9.2 -3.06815 | opp_overlap 781059 AGGTTTAATGAATCT GCTTTCCCTA ACA TAGGTAAAGC TATGTTACAAAAACT CTLon_0657 782603 - 781776 - | N6-adenine-specific DNA methylase TERM 994 782110 - 782090 - G 84 -11.3 -3.14132 | TCTTTCCTCGACGAA TTTCCTTCT TCA AGAAGGAAA ACACATCTTCTATAA ribC 783199 - 782600 - | riboflavin synthase subunit alpha CTLon_0659 783592 - 784056 + | transcriptional regulator NrdR TERM 995 784191 - 784175 - g 73 -2.9 -5.09173 | overlap 784165 CAAGAGGTCAAAAAA CCTAATG AGG CAACAGG CTATTCTCAGCACCA TERM 996 784439 - 784415 - g 75 -2.2 -5.25772 | AAATCACAAGAAAAA TTCGAAAAAG GCCTT CTTTCTGGAA ACTAGTTACAATGCC dksA 784070 - 784444 + | dnaK suppressor protein lspA 784450 - 784953 + | lipoprotein signal peptidase CTLon_0662 785055 - 786416 + | Sodium/alanine symporter protein pcnB 786632 - 787909 + | polyA polymerase TERM 997 788421 - 788431 + G 73 -5.4 -4.7373 | TCGGATTGACGATCT TCTC ATT GAGA TTTTTCATCCAGTGG TERM 998 789716 - 789706 - g 70 -5.4 -4.45545 | AGAAAAACAAAAAGA CTCT TGC AGAG ATGTGTATCAAGCAA lpxB 787970 - 789793 + | lipid-A-disaccharide synthase TERM 999 791876 - 791851 - g 84 -2.6 -5.69793 | overlap 791853 791857 ATACTAAACAAAAAA TATTAAGAGC TTCTTG GCTCCCAACA GGAGAATATGTCCTT pmpA 789900 - 792827 + | polymorphic outer membrane protein TERM 1000 792875 - 792908 + F 100 -19.9 -4.6575 | opp_overlap 792880 CTCTGTATCTTCCTA GTAAATTAGGCAAGG AATA CCTTGCCTAATTTAC TTTTCTGATTTATCT TERM 1001 792903 - 792880 - f 100 -14 -3.72893 | opp_overlap 792875 TATCTTCCTAGTAAA TTAGGCAAGG AATA CCTTGCCTAA TTTACTTTTCTGATT TERM 1002 794127 - 794167 + G 100 -13.4 -3.29947 | opp_overlap 794130 794154, overlap 794129 794130 ATCACTTTACCTTCA AAAGCTCAAGCATCTGCA GGAAA TGCAGATGCTTGGGCCTC TTCCTCTCCTCAATC TERM 1003 794129 - 794165 + G 100 -16 -3.214 | opp_overlap 794130 794154, overlap 794127 794130 CACTTTACCTTCAAA AGCTCAAGCATCTGCA GGAAA TGCAGATGCTTGGGCC TCTTCCTCTCCTCAA TERM 1004 794164 - 794130 - g 100 -17.3 -4.11394 | opp_overlap 794129 794127 794130, overlap 794154 ACTTTACCTTCAAAA GCTCAAGCATCTGCA GGAAA TGCAGATGCTTGGGC CTCTTCCTCTCCTCA TERM 1005 794130 - 794164 + G 100 -19.5 -2.52519 | opp_overlap 794130 794154, overlap 794129 794127 ACTTTACCTTCAAAA GCTCAAGCATCTGCA GGAAA TGCAGATGCTTGGGC CTCTTCCTCTCCTCA TERM 1006 795408 - 795385 - g 84 -11 -3.63991 | opp_overlap 795384 795381 795398 CAGGAGTCGCAACAA CAGCTTCAGC ACCT GCTGCAGCTG CTGCTTCCCTACAAG pmpB 792966 - 798215 + | polymorphic outer membrane protein TERM 1007 798224 - 798248 + F 100 -14.3 -3.66883 | CTTCTAATTCTTTTT GGCCAGCCTCT TCA AAAGGCTGGCC TTTACGATCTCTTAA TERM 1008 800875 - 800858 - g 72 -6.3 -4.27117 | GTTCTACAACAGAAA CTCCTAC TTTA ATAGGAG GAGGTGCTATCTATG TERM 1009 801934 - 801914 - g 77 -8.4 -3.93695 | opp_overlap 801926 801932 CTGAGGATTCAGAAA CTGTAAAC TCTGC GTTTACAG GAACGATTCTGTTCT pmpC 798391 - 803715 + | polymorphic outer membrane protein TERM 1010 803762 - 803721 - f 72 -6 -4.45117 | gap 2, opp_overlap 803732, overlap 803723 GACATTCTAAATAAA TATCCTGGAAAGGCAGCTCT CGCA AGGGCTGCC-TTCTAGGA-A TCCCTGCCTCCAGAA TERM 1011 803761 - 803723 - f 84 -11.1 -3.82628 | gap 1, opp_overlap 803732, overlap 803721 CATTCTAAATAAATA TCCTGGAAAGGCAGCTCT CGCA AGGGCTGCC-TTCTAGGA ATCCCTGCCTCCAGA TERM 1012 803732 - 803753 + F 89 -12.3 -3.31461 | opp_overlap 803723 803721 TAAATATCCTGGAAA GGCAGCTCT CGCA AGGGCTGCC TTCTAGGAATCCCTG TERM 1013 803869 - 803829 - f 100 -6.1 -6.34616 | TCAAAACAAAAAAAA GACACACTTGCAGAGGTGA GGG CCACGCGAGCAAATGTGTC AGACGGAGAGAGAGG TERM 1014 804756 - 804772 + G 82 -8.1 -4.53119 | opp_overlap 804756 ACAGTCTCAACTAGA TCTTTTG GAT CAAAAGA TTTCTTCTATTGTTT CTLon_0668 804268 - 805098 + | metal transporter, metal-binding component TERM 1015 805323 - 805339 + G 80 -6.5 -4.82667 | overlap 805324 CGCCCTCTATCCATA GGTTGGG TTC CCCAACA TTTTTCCTATGATGC TERM 1016 805324 - 805338 + G 78 -10 -3.48877 | overlap 805323 GCCCTCTATCCATAG GTTGGG TTC CCCAAC ATTTTTCCTATGATG CTLon_0669 805095 - 805805 + | metal transporter, ATP-binding component TERM 1017 806168 - 806181 + GT 84 -5.3 -5.26119 | CTCCCTTCCTTTAAC TCAGA GCTC TCTGA TTTTCTTTTTGGCAA TERM 1018 806197 - 806222 + GT 70 -4.7 -4.56702 | opp_overlap 806199, overlap 806199 TTTTCTTTTTGGCAA TATCTTATGGG TCAC CCCACAAGATC TTTATTTCCTTGGGA TERM 1019 806199 - 806220 + GT 72 -7.3 -3.88884 | opp_overlap 806199, overlap 806197 TTCTTTTTGGCAATA TCTTATGGG TCAC CCCACAAGA TCTTTATTTCCTTGG TERM 1020 806220 - 806199 - gT 73 -9.5 -3.01712 | opp_overlap 806199 806197 TTCTTTTTGGCAATA TCTTATGGG TCAC CCCACAAGA TCTTTATTTCCTTGG CTLon_0671 807600 - 806593 - | GTPase ObgE CTLon_0670 805796 - 806677 + | metal transporter, membrane permease component TERM 1021 807162 - 807179 + gT 81 -11.3 -2.84841 | opp_overlap 807159, overlap 807159 807158 CAACCAAGCGAATTT CTCCAGG TTTA CCTGGAG TAGCTTTTGTTGGAG TERM 1022 807658 - 807627 - TR 100 -6.7 -6.08342 | GAACAAACAAAAAAA GCCCTATTTTTAC GCGTAG GCAAAAACAGAGC TTGAACAAACTGAAT rpmA 807941 - 807690 - | 50S ribosomal protein L27 rplU 808295 - 807972 - | 50S ribosomal protein L21 TERM 1023 808577 - 808547 - H 100 -10.7 -5.60993 | TCTGTCACAAAAAAA TTTAGAGAGTTCT CCGTC AAAACTCTCTAAA CGCCATTAGCGGACA CTLon_0674ae 808845 - 809546 + | putative inner membrane protein TERM 1024 809653 - 809672 + F 72 -2.1 -5.2853 | opp_overlap 809655 809659, overlap 809635 809655 TTCTGTTCCTTTCAT AAGCAAC AGCAGA GTTGCTA TTTTCTTTTTAAATC CTLon_0675af 809731 - 809892 + | hypothetical protein CTLon_0676 809909 - 810070 + | hypothetical protein TERM 1025 810128 - 810182 + G 73 -5.3 -4.59773 | opp_overlap 810132 810150, overlap 810129 AATTTTTATTTCTAA C-GAACAACAAGATGTTAGCATAGATT TAC AATCTGCTC-AGCGTCTTGTTGTTCTG TTTTTGGAACTACAA TERM 1026 810129 - 810180 + G 80 -9 -3.91506 | gap 1, opp_overlap 810132 810150, overlap 810128 ATTTTTATTTCTAAC GAACAACAAGATGTTAGCATAGATT TAC AATCTGCTC-AGCGTCTTGTTGTTC TGTTTTTGGAACTAC CTLon_0677 810084 - 810569 + | hypothetical protein CTLon_0678 810702 - 811811 + | putative cation efflux protein rsbV 812000 - 812350 + | anti-sigma F factor antagonist TERM 1027 812970 - 812954 - g 78 -9.5 -3.68827 | GACCCATCAGGGAAA GGATCTT TTG AAGATCC CGATATCTTCACAAT CTLon_0680 812528 - 814393 + | hypothetical protein CTLon_0681 814590 - 815699 + | hypothetical protein CTLon_0682 815672 - 816493 + | hypothetical protein ubiE 816429 - 817118 + | ubiquinone/menaquinone biosynthesis methyltransferase CTLon_0684 818133 - 817144 - | hypothetical protein TERM 1028 817341 - 817362 + g 83 -8.7 -4.0847 | overlap 817342 817357 817357 CTTCCAGACGCCCTC CTCCTCGCA AGTG TGCGAGGAA TTCTTCTTCTGTATC TERM 1029 817342 - 817361 + g 86 -12.2 -3.03998 | overlap 817341 817357 817357 TTCCAGACGCCCTCC TCCTCGCA AGTG TGCGAGGA ATTCTTCTTCTGTAT TERM 1030 817515 - 817526 + g 73 -5.8 -4.56775 | overlap 817522 TTGCCGACTGTTTAG GAGG TCGC CCTC TTTTTGGACGAGGGT dapF 819021 - 818194 - | diaminopimelate epimerase TERM 1031 818804 - 818764 - GR 75 -9 -3.66356 | gap 1, overlap 818767 ATCTTCAAGTCCAAA GCACTGGGCTAC-GTGCGC CATT GCGCACCGCAACCCATTCC CGCACATAGACGCGA TERM 1032 818801 - 818767 - GR 73 -9.3 -2.94412 | gap 1, overlap 818764 TTCAAGTCCAAAGCA CTGGGCTAC-GTGCGC CATT GCGCACCGCAACCCAT TCCCGCACATAGACG clpP 819568 - 818990 - | ATP-dependent Clp protease proteolytic subunit glyA 821073 - 819580 - | serine hydroxymethyltransferase TERM 1033 820569 - 820584 + g 86 -9 -4.36411 | GGCCTAGGCATTTGT GCTGAG CCAT CTCAGC TTTTAATGCTTCGTA TERM 1034 821201 - 821187 - H 70 -7.2 -3.74749 | ATGAGAAAGTCTAAA CTTTCT AGG AGAAAG AGGATTTATTTTAAC TERM 1035 821246 - 821234 - H 76 -4.1 -5.24416 | TAACTACAAGAAAAA GAAAC GAT GCTTC CAAGACCATTACCAA CTLon_0688 821437 - 822108 + | uroporphyrinogen-III synthase TERM 1036 822137 - 822164 + F 89 -12.2 -3.28785 | opp_overlap 822137, overlap 822133 822131 ATTTATTTTAATGAA GATCTCTTCAAG AAGT TTTGAAGAGATC TTACCTCTTTTAGAG TERM 1037 822164 - 822137 - f 84 -11.5 -3.35992 | opp_overlap 822137 822133 822131 ATTTATTTTAATGAA GATCTCTTCAA GAAGTT TTGAAGAGATC TTACCTCTTTTAGAG ispF 822211 - 822747 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CTLon_0690 823796 - 822744 - | putative oxidoreductase TERM 1038 823776 - 823738 - G 100 -14.9 -3.63515 | gap 1, opp_overlap 823737 823742, overlap 823742 TCCGATGTGGAAGAA CAAAGCTCACGTGAATGT AAAA ACATCCAC-TGAGCTTTG AATTTAGAAAATAAA TERM 1039 823772 - 823742 - G 100 -9.9 -4.45068 | gap 1, opp_overlap 823737 823742, overlap 823738 ATGTGGAAGAACAAA GCTCACGTGAATGT AAAA ACATCCAC-TGAGC TTTGAATTTAGAAAA TERM 1040 823742 - 823772 + g 72 -7.7 -3.84451 | gap 1, opp_overlap 823742 823738, overlap 823737 ATGTGGAAGAACAAA GCTCACGTGAATGT AAAA ACATCCAC-TGAGC TTTGAATTTAGAAAA rpsJ 824130 - 823813 - | 30S ribosomal protein S10 TERM 1041 824100 - 824111 + g 71 -3 -4.92756 | CAAAACCTTTCAAGC GAAT CCGA ATTC TTTGTTTTTGCTGCT fusA 826222 - 824138 - | elongation factor G rpsG 826737 - 826264 - | 30S ribosomal protein S7 rpsL 827176 - 826787 - | 30S ribosomal protein S12 CTLon_0695 827418 - 827756 + | hypothetical protein TERM 1042 827788 - 827732 - f 73 -7 -4.19177 | overlap 827748 ATTTTCCAATATAAA TTTTCTTGTCACAAAAGAAAAATAAC CCTCC GTTACCTTTCCTTTCTGAGAAAAAAA AGTTTTTTTTCAGAG TERM 1043 828345 - 828334 - g 81 -4.4 -5.28778 | ACTATTGAGAAAAAA CCAA GCGC TTGG GCTTCTTCAATTGAA TERM 1044 829723 - 829713 - g 81 -4 -5.40474 | ACGTCTTGAAAAAAA CAAA AAC TTTG AGATTTTTGTCCAAC TERM 1045 829774 - 829751 - g 78 -2.4 -5.46629 | AACACTTGAAAAAAA CAAACAAACA GGAT CGATCGTTTG GAAGCAACGATCTGC tsp 827914 - 829863 + | carboxy-terminal processing protease TERM 1046 829896 - 829866 - T 72 -5.3 -4.65916 | opp_overlap 829869, overlap 829867 829868 TCCAGCTCAATAAAA TCTGGGAGGAGGA CTCTT TCCTCCTCCCTTT CCATACATCATCTGT TERM 1047 829895 - 829867 - T 74 -8.8 -3.39068 | opp_overlap 829869, overlap 829866 829868 CCAGCTCAATAAAAT CTGGGAGGAGGA CTCTT TCCTCCTCCCTT TCCATACATCATCTG TERM 1048 829894 - 829868 - T 85 -12.3 -2.62958 | opp_overlap 829869, overlap 829867 829866 CAGCTCAATAAAATC TGGGAGGAGGA CTCTT TCCTCCTCCCT TTCCATACATCATCT TERM 1049 829869 - 829893 + T 100 -15.8 -3.67296 | opp_overlap 829868 829867 829866 AGCTCAATAAAATCT GGGAGGAGGA CTCTT TCCTCCTCCC TTTCCATACATCATC crpA 830422 - 829970 - | cysteine-rich membrane protein TERM 1050 830574 - 830551 - R 100 -16 -5.9218 | TAGATAACAAAAAAA GCCGCCCAGG AATC CCTGGACGGC ACCTACACATCGATA omcB 832261 - 830600 - | 60kD cysteine-rich outer membrane protein TERM 1051 832336 - 832377 + r 100 -14.7 -2.80935 | opp_overlap 832340, overlap 832338 832350 ATTTTCTTGTTAGCC GAAATAGTTAGTAAGGAAG CCAA CTTCCTTACTAACTACATC TGTCGTGGGTAGGCT TERM 1052 832338 - 832375 + r 82 -11.5 -2.95298 | opp_overlap 832340, overlap 832336 832350 TTTCTTGTTAGCCGA AATAGTTAGTAAGGAAG CCAA CTTCCTTACTAACTACA TCTGTCGTGGGTAGG TERM 1053 832373 - 832340 - R 100 -18.5 -3.59979 | opp_overlap 832338 832336 832350 TCTTGTTAGCCGAAA TAGTTAGTAAGGAAG CCAA CTTCCTTACTAACTA CATCTGTCGTGGGTA omcA 832674 - 832408 - | cysteine-rich outer membrane protein TERM 1054 832677 - 832711 + H 79 -6.5 -4.7878 | opp_overlap 832677 CAGTTTTTTTCATAA CTTCCAGACTCCTTT CTAGA AAAGGGCTCTTGAAG TTTCTTTTATCGATA CTLon_0700 833011 - 833235 + | putative lipoprotein gltX 834752 - 833232 - | glutamyl-tRNA synthetase TERM 1055 834802 - 834812 + r 70 -8.2 -3.31269 | opp_overlap 834802 834801 834799, overlap 834808 TTATGAAATGAACAC CCCG TCC CGGG TTCCTGTCCTATGAA TERM 1056 834981 - 834952 - R 100 -19.3 -6.09888 | opp_overlap 834972 TTTCAACAAAAAAAA GAGCCCCCTCCGG AATT CCGGAGGAGGCCC AAGCTCTCCCCTGCT euo 835574 - 835023 - | hypothetical protein recJ 837732 - 835978 - | single-stranded-DNA-specific exonuclease TERM 1057 837131 - 837148 + g 73 -3.5 -5.06585 | overlap 837138 CCTACTCCTGTAAGC TCTTTAT TTGG ATAAGGA TTTTTATCTAATTTA TERM 1058 837795 - 837767 - R 100 -7.4 -5.75342 | overlap 837769 TCCTGTTAAAAAAAA GCTCCCTCCTTC TTTAG GAGGAAAGGAGC CCCATAATCATCCCA secF 842052 - 837850 - | bifunctional preprotein translocase subunit SecD/SecF TERM 1059 839041 - 839053 + g 74 -4.8 -4.86001 | opp_overlap 839041 ATTAGAGTCAAAAAT GGCA CTGAA TGCC TTTTTATAACCTGCT TERM 1060 842477 - 842448 - R 71 -6.5 -4.03885 | opp_overlap 842457 TTCTAAAAAAATCAA CAGCAAACTGTTT CTCA AAACTGCTTACTG AATAGGCGCTTCAGA CTLon_0705 842804 - 842472 - | hypothetical protein uppS 843266 - 844027 + | undecaprenyl pyrophosphate synthetase cdsA 844033 - 844950 + | phosphatidate cytidylyltransferase cmk 844947 - 845597 + | cytidylate kinase plsC 845594 - 846244 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase argS 846259 - 847950 + | arginyl-tRNA synthetase TERM 1061 847989 - 847968 - T 85 -9.5 -4.29325 | gap 1 TATGAATATTTAAAA GGGAAG-CTC TTC GAGTCTTCCC TTAAACATACACAGA murA 849324 - 847990 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1062 849004 - 848994 - G 75 -3.2 -5.20606 | AAATAGGAACAAAAA TCCC ATA AGGA CAACGACGTAACAAC TERM 1063 849455 - 849429 - H 95 -12.6 -3.27984 | overlap 849427 849425 ATTAACAAAGAGACA TTTGTTTGTTTT TAA AAAACAAACAAA AATAAACTTTGTAGC TERM 1064 849608 - 849627 + G 74 -7.8 -3.95183 | overlap 849623 ACTTCGGCATCAGGT GCTTCCGG ATCT CTGGGAGC TTCTTCTGTATCTAC tarp 849536 - 852541 + | translocated actin-recruiting protein TERM 1065 852587 - 852558 - T 83 -10.8 -3.39384 | overlap 852556 852560 AAGCAAAGGAGAACA GACGAGCAGAAC AGATAA GTTCTGCTCGTG AATGCCTAAGCCATA TERM 1066 852585 - 852560 - T 100 -13.4 -3.25207 | overlap 852558 852556 GCAAAGGAGAACAGA CGAGCAGAAC AGATAA GTTCTGCTCG TGAATGCCTAAGCCA CTLon_0713 853309 - 852593 - | hypothetical protein CTLon_0714 853995 - 853492 - | ribosomal-protein-alanine acetyltransferase prfB 855099 - 853992 - | peptide chain release factor 2 CTLon_0716 855419 - 855679 + | hypothetical protein TERM 1067 855696 - 855726 + F 76 -9 -3.78633 | overlap 855699 ATAGAAATTGACTCA CGTGTTCCTCGTCT TTA AGATGAGGAACTAG TTCATTCTTTTTGTT TERM 1068 855699 - 855723 + F 95 -13.7 -2.94669 | overlap 855696 GAAATTGACTCACGT GTTCCTCGTCT TTA AGATGAGGAAC TAGTTCATTCTTTTT TERM 1069 856125 - 856147 + G 73 -10.6 -2.50443 | overlap 856124 ATTACGCCACCTACG TATCCCGTGA TAT TCACGGGAAA ATTAATACCATCTCA TERM 1070 856463 - 856493 + G 73 -3.9 -5.00884 | overlap 856466 AATCCCGATACGATT CACCATCTCCAAG ATTAC CCTGGTGATGTTG TTTTTTCCGGGCACT CTLon_0717 855737 - 856726 + | putative metallo-phosphoesterase ispD 856716 - 857375 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 1071 857407 - 857397 - g 100 -4 -5.9873 | CCATGACAAAAAAAA TTGT TTT ACAA ATCGCTTATCAAGGA truA 857384 - 858187 + | tRNA pseudouridine synthase A CTLon_0720 858813 - 858139 - | HAD superfamily hydrolase CTLon_0721 858906 - 859547 + | hypothetical protein TERM 1072 859627 - 859655 + F 79 -9 -4.09864 | AAGGATATTTCCTGT CAGGGGAAGAAA CTCTA TTTCTTCTTCTG TTTTCAGACCTAGAT CTLon_0722 859841 - 860170 + | hypothetical protein TERM 1073 860797 - 860785 - g 73 -2.7 -5.10064 | overlap 860779 TTGAATATACAAAAA TTCAA CCT CTGAA CCTTCGTTCTATAGA atoS 860148 - 861206 + | two component regulator, histidine kinase TERM 1074 862285 - 862259 - g 80 -8.8 -4.03167 | TAAGATGAATAATAA GCCTCCAAAAAC ATT GTCTTTAGAAGC GCAAAGAAATCTTTT atoC 861249 - 862409 + | two component system response regulator CTLon_0725 862636 - 863172 + | hypothetical protein recO 863142 - 863873 + | DNA repair protein RecO CTLon_0727 864472 - 863870 - | hypothetical protein CTLon_0728 864950 - 865744 + | hypothetical protein CTLon_0730 866932 - 866003 - | hypothetical protein CTLon_0729 865750 - 866064 + | hypothetical protein TERM 1075 866235 - 866208 - Gf 70 -5.6 -4.386 | gap 1, opp_overlap 866230, overlap 866230 TAAGCTTTCAGAAAA CAGCG-CCTCTGA TGA TCAGAAATCGCCG TTTGACGATTTTCTA pheT 867020 - 869392 + | phenylalanyl-tRNA synthetase subunit beta CTLon_0732 869389 - 870354 + | hypothetical protein CTLon_0733 870373 - 870885 + | putative DNA methyltransferase oppC2 872618 - 870882 - | oligonucleotide transport system permease TERM 1076 871084 - 871069 - G 78 -4 -5.09426 | gap 1 CCTAACCCTAAAAAA GTG-AGC CCT GCTTCAC AGCTAATCATAGCCA TERM 1077 871687 - 871663 - G 79 -10.9 -3.05384 | opp_overlap 871658 871685 TCGGTTTCTATCCAA TTACGCTTATC CAT GATAAACGTAA TCGAATTATTTAAAG TERM 1078 872409 - 872394 - G 76 -2.6 -5.27399 | TAAGACATTAAAAAA TAAATC GATA GACTTA GTGTAAAAACCTGGG oppB2 874035 - 872620 - | oligopeptide transport system membrane permease TERM 1079 873379 - 873360 - G 84 -10 -3.90318 | opp_overlap 873360 TGATCACTTCAGAAA CGACCGTC TTAT GACAGTCG TTGCGTAACGTTCCA oppA4 876170 - 874080 - | oligopeptide transport system, binding protein TERM 1080 875894 - 875875 - G 71 -5 -4.63218 | CCTTTCGGAACAAAA CCTTCCTT TAAC AACGAAGG GACCACTTTTTCAAC TERM 1081 876408 - 876387 - R 100 -11.7 -6.36459 | opp_overlap 876387 TTTAAGAAAAAAAAA GAGAGTTGA AAAT TCAACTCTC TTTTAGAAAAAACTA TERM 1082 876387 - 876408 + r 90 -11.7 -4.07885 | opp_overlap 876387 TTTAAGAAAAAAAAA GAGAGTTGA AAAT TCAACTCTC TTTTAGAAAAAACTA TERM 1083 876431 - 876421 - R 76 -4 -5.24129 | CTCTTTTAGAAAAAA CTAT CGA ATAG GATCTCTAGTTTCTT TERM 1084 876512 - 876483 - R 79 -8.8 -3.97331 | opp_overlap 876483 876488, overlap 876488 AAGCTAGGGAAACAA CTAAAGAAGAAA CTTCTT TTTCTTCTTCAG TCTCATCAGCGTAAA TERM 1085 876488 - 876498 + r 81 -5.4 -5.30348 | opp_overlap 876483 876488, overlap 876483 AGGGAAACAACTAAA GAAG AAA CTTC TTTTTCTTCTTCAGT CTLon_0737 877507 - 876776 - | hypothetical protein CTLon_0738 878322 - 877669 - | hypothetical protein TERM 1086 879034 - 879045 + G 78 -2.2 -5.42131 | TCTCTATTCGCCCTT TGGC GACA GCTA TTTTTTCTGTGATTG CTLon_0739 878790 - 879155 + | hypothetical protein CTLon_0740 880132 - 879134 - | hypothetical protein TERM 1087 879748 - 879736 - G 80 -2.7 -5.43621 | ATAAATTACAAAAAA CAAAA TAC TCTTG ATTTTGCATTACCAG hemZ 881233 - 880289 - | ferrochelatase TERM 1088 880768 - 880739 - G 86 -11.5 -3.35597 | overlap 880737 CTGAGCGGCTAAACA GTCTCGAATATGC TGTT GCATACACGAGAC AAACTGAGGATGCAC TERM 1089 881046 - 881029 - G 77 -6.3 -4.59773 | CTGTATCTTGAAAAA TAGGAGA TCCC CCTCCTA AATAAGCGTATTGTC fliY 882040 - 881255 - | glutamine-binding protein CTLon_0743 882658 - 882086 - | methyltransferase TERM 1090 882626 - 882615 - G 74 -4.4 -4.9218 | opp_overlap 882615 GAGGGATTAGAAAAA GTCT TTAA AGAC TTCCCTTTGAATTTA CTLon_0744 883389 - 882655 - | putative phosphohydrolase glgC 884803 - 883478 - | glucose-1-phosphate adenylyltransferase CTLon_0746 884994 - 885245 + | hypothetical protein rho 886649 - 885255 - | transcription termination factor Rho TERM 1091 886500 - 886525 + g 71 -4.7 -4.70921 | CTGTAGTTTAGCAAT CTTCGTAACTG CTAC TGGTTGCGAGG TTTCTTTCTCTTCTG CTLon_0748 887254 - 886646 - | dephospho-CoA kinase polA 889848 - 887248 - | DNA polymerase I TERM 1092 888890 - 888878 - G 80 -9.1 -3.92542 | TGTAGCTGCAAAGAA GGGAG ATG CTCCC CAGTATAAGCCGCAC sohB 890860 - 889865 - | exported protease IV TERM 1093 890759 - 890734 - G 71 -3.3 -5.01553 | gap 1 AATTGACAAACAAAA CTCCGTCTCCCG CCC CAAGA-ACAGAG GCCGATAGGACAAAA TERM 1094 890990 - 890954 - R 100 -10.3 -5.63517 | opp_overlap 890960, overlap 890955 890960 TTTTTAAATAAAAAA TTAAAAGACCTGGAATA CTA TACTCCAGGTCTTTTTC TTCTCAAGACTATAA TERM 1095 890989 - 890955 - R 100 -13.8 -3.97026 | opp_overlap 890960, overlap 890954 890960 TTTTAAATAAAAAAT TAAAAGACCTGGAATA CTA TACTCCAGGTCTTTTT CTTCTCAAGACTATA TERM 1096 890960 - 890984 + r 100 -11.5 -5.18726 | opp_overlap 890955 890954 890960 AATAAAAAATTAAAA GACCTGGAATA CTA TACTCCAGGTC TTTTTCTTCTCAAGA TERM 1097 890984 - 890960 - R 100 -13.7 -4.9251 | opp_overlap 890960, overlap 890955 890954 AATAAAAAATTAAAA GACCTGGAATA CTA TACTCCAGGTC TTTTTCTTCTCAAGA CTLon_0751 892622 - 891000 - | putative nucleotide transport protein pgsA 893340 - 892834 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 1098 892991 - 892981 - G 78 -4 -5.11937 | AACAACTGTAAAAAA CTTT CCA AAAG ACAATGCTCTGTAAT CTLon_0753 893885 - 893736 - | hypothetical protein TERM 1099 894620 - 894631 + GH 81 -4.4 -5.26875 | GTTTTGATAGCCGGC TTCC TGTA GGAA TTTTTTCATTAGAGA dnaB 893854 - 895272 + | replicative DNA helicase TERM 1100 895393 - 895358 - fH 89 -6.1 -5.61596 | opp_overlap 895356 895368 ACTTTGAGAAAAAAA CCTATGAGGATCGGG TGCTTG CTCGATTCTCCTAGG CATTAGCTGAGTCTT gidA 895567 - 897399 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA lplA 897389 - 898090 + | lipoate-protein ligase A TERM 1101 898128 - 898098 - T 100 -17.6 -6.22802 | overlap 898100 TCCTATAAAAAAAAA CACCCCCCTCTGCA CGG TGCAGAGGGGGGCT TGCACAATCTCAAAA TERM 1102 898126 - 898100 - T 100 -22.4 -4.76409 | overlap 898098 CTATAAAAAAAAACA CCCCCCTCTGCA CGG TGCAGAGGGGGG CTTGCACAATCTCAA ndk 898572 - 898147 - | nucleoside diphosphate kinase ruvA 899334 - 898732 - | Holliday junction DNA helicase motor protein TERM 1103 898960 - 898973 + g 84 -3.8 -5.50499 | TTTAAGATCCACCAT CAGC TTTTCT GCTG TTTTTTTCCCTATCC ruvC 899866 - 899354 - | Holliday junction resolvase CTLon_0760 900423 - 899974 - | hypothetical protein TERM 1104 900728 - 900701 - R 100 -12 -4.7373 | overlap 900702 CCATCTGAGCAAAAA CGACGAGGACCC TAAA GAGTCCTCGCCA CAGCTTTACAAGAAG TERM 1105 900727 - 900702 - R 100 -13.3 -3.43756 | overlap 900701 CATCTGAGCAAAAAC GACGAGGACCC TAAA GAGTCCTCGCC ACAGCTTTACAAGAA CTLon_0761 901681 - 900815 - | hypothetical protein gapA 902696 - 901692 - | glyceraldehyde 3-phosphate dehydrogenase TERM 1106 902748 - 902731 - R 79 -7.1 -4.56775 | AGTGTTTTCGAAAAA TTAGCAT CACT ATGCTAA AAATTCTATGATACA rplQ 903165 - 902740 - | 50S ribosomal protein L17 rpoA 904307 - 903174 - | DNA-directed RNA polymerase subunit alpha rpsK 904726 - 904328 - | 30S ribosomal protein S11 rpsM 905116 - 904748 - | 30S ribosomal protein S13 secY 906545 - 905172 - | preprotein translocase subunit SecY rplO 907002 - 906568 - | 50S ribosomal protein L15 TERM 1107 906954 - 906976 + g 72 -9.2 -3.22102 | overlap 906953 GGCCCAAGAGTTTCG TTCTTCGCTT ACG AGGCGAAGGA TCTTGTAAACACTCT rpsE 907492 - 906995 - | 30S ribosomal protein S5 rplR 907878 - 907507 - | 50S ribosomal protein L18 rplF 908451 - 907900 - | 50S ribosomal protein L6 rpsH 908880 - 908479 - | 30S ribosomal protein S8 TERM 1108 908683 - 908713 + g 75 -3.4 -5.10656 | gap 1, opp_overlap 908692, overlap 908684 ACGATCTTCCCCGTA CCGCAAAAAGACT CTCATT AGTCTTTT-GCGA TTTTCTTCTTTTACT rplE 909440 - 908898 - | 50S ribosomal protein L5 rplX 909777 - 909442 - | 50S ribosomal protein L24 TERM 1109 909758 - 909746 - G 70 -7.7 -3.66117 | overlap 909744 GCAAGCACATAAACA GTGTC ACC GACAC AAACACTACGTCTCT rplN 910158 - 909790 - | 50S ribosomal protein L14 rpsQ 910426 - 910175 - | 30S ribosomal protein S17 rpmC 910637 - 910419 - | 50S ribosomal protein L29 rplP 911055 - 910639 - | 50S ribosomal protein L16 TERM 1110 910768 - 910754 - G 74 -7.8 -3.93768 | overlap 910752 910755 ACTTCGAATAAAATA CGTCCG GGA CGGACA ACAGCTACCCAGTGA rpsC 911762 - 911088 - | 30S ribosomal protein S3 rplV 912107 - 911772 - | 50S ribosomal protein L22 rpsS 912392 - 912126 - | 30S ribosomal protein S19 rplB 913252 - 912398 - | 50S ribosomal protein L2 TERM 1111 913103 - 913124 + g 75 -2.3 -5.27335 | ATCTCGCCCTCCAGA GCTCTTTTT GAAA AAAGAAAGC TTTTTATTTGGACGA rplW 913611 - 913276 - | 50S ribosomal protein L23 TERM 1112 913500 - 913512 + g 71 -3.3 -4.91473 | overlap 913501 TGTACTTAGGATCTT TGCAG AAA CTGCC TTTCTTTTTACCTTC rplD 914295 - 913627 - | 50S ribosomal protein L4 TERM 1113 914076 - 914092 + g 70 -9.4 -2.74094 | overlap 914075 914074 914078 CTGCCAAGCAACCCT GACGGG CATTC CCCGTC CCTTTTTGTCTAAAA TERM 1114 914283 - 914273 - G 71 -4 -4.82901 | TCTTTTCCAGAAAAA TCAA ATT TTGA TAATAGAACCATTAG rplC 914969 - 914304 - | 50S ribosomal protein L3 TERM 1115 914915 - 914937 + g 74 -4.8 -4.74706 | opp_overlap 914919 914921, overlap 914916 GATTTCCATTCTTAT CGAAGACATG CAT CATGCCTTCC TTTTTCCCTATTAGG TERM 1116 914916 - 914936 + g 71 -8.3 -3.441 | opp_overlap 914919 914921, overlap 914915 ATTTCCATTCTTATC GAAGACATG CAT CATGCCTTC CTTTTTCCCTATTAG TERM 1117 915353 - 915376 + r 100 -14 -5.06816 | opp_overlap 915353 TTTGTAGATAAAAAA GGCTGTTTCT TTTT AGAAACAGCC TTTTTCTTAAGAAAT TERM 1118 915376 - 915353 - R 100 -14 -5.36441 | opp_overlap 915353 TTTGTAGATAAAAAA GGCTGTTTCT TTTT AGAAACAGCC TTTTTCTTAAGAAAT CTLon_0786 916300 - 915404 - | hypothetical protein TERM 1119 916066 - 916050 - G 83 -10.9 -3.5594 | AAGGCATTCCCTAAA GCGAGAA CAG TTCTCGC ATCCCCTAATCCTTT fmt 917416 - 916466 - | methionyl-tRNA formyltransferase TERM 1120 916659 - 916684 + g 88 -11.1 -3.76125 | gap 1, opp_overlap 916663, overlap 916663 GATTCCATTCTAGCA GAGAGCACGCCG AGA CGGCGAGC-CTC TTTCCCTTGGGATAG TERM 1121 916681 - 916663 - G 83 -11.6 -2.94747 | opp_overlap 916659 916663 CCATTCTAGCAGAGA GCACGCCG AGA CGGCGAGC CTCTTTCCCTTGGGA TERM 1122 916663 - 916681 + g 80 -11.6 -2.6732 | opp_overlap 916663, overlap 916659 CCATTCTAGCAGAGA GCACGCCG AGA CGGCGAGC CTCTTTCCCTTGGGA lpxA 918248 - 917406 - | UDP-N-acetylglucosamine acyltransferase fabZ 918721 - 918260 - | (3R)-hydroxymyristoyl-ACP dehydratase lpxC 919578 - 918718 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase cutE 921305 - 919677 - | apolipoprotein N-acyltransferase CTLon_0792 921851 - 921369 - | acyl-CoA hydrolase dnaQ2 922739 - 921987 - | DNA polymerase III subunit epsilon CTLon_0794 923216 - 922743 - | putative nucleotide-binding protein CTLon_0795 923911 - 923195 - | hypothetical protein TERM 1123 923861 - 923881 + g 76 -2.6 -5.34309 | overlap 923867 TTCTGGGGATTTTTG CTTTTTCA AAAAC TGGAGAAG TTTTTGTTTGATACT trxA 924633 - 924941 + | thioredoxin TERM 1124 924980 - 924962 - T 100 -14.6 -4.36914 | opp_overlap 924956 CTCTTCTCTAGAAAA GGCCGAGA AAT TCTCGGCC TTAACATGATTCAAA CTLon_0797 925446 - 924991 - | SpoU family rRNA methylase TERM 1125 925230 - 925254 + g 72 -8 -3.7941 | gap 1, opp_overlap 925228 925229 925253 TTAGACAAAAAATGC GCTC-TTTAGG CACC CCTAAAAGAGC TTCTTCTAAAGAATC TERM 1126 925378 - 925343 - G 100 -9.1 -5.27335 | overlap 925344 925345 925348 TCTGCTAAAGAAAAA CCTAAGGGCCGAACT AATATA AGTTCAGCCCCTAAA GCCACACATGTCCTA TERM 1127 925377 - 925344 - G 86 -10.4 -3.75678 | overlap 925343 925345 925348 CTGCTAAAGAAAAAC CTAAGGGCCGAACT AATATA AGTTCAGCCCCTAA AGCCACACATGTCCT TERM 1128 925376 - 925345 - G 81 -11.7 -2.84684 | overlap 925344 925343 925348 TGCTAAAGAAAAACC TAAGGGCCGAACT AATATA AGTTCAGCCCCTA AAGCCACACATGTCC TERM 1129 925373 - 925348 - G 83 -11.2 -3.54768 | overlap 925345 925344 925343 TAAAGAAAAACCTAA GGGCCGAACT AATATA AGTTCAGCCC CTAAAGCCACACATG mip 926193 - 925462 - | peptidyl-prolyl cis-trans isomerase aspS 928078 - 926330 - | aspartyl-tRNA synthetase hisS 929345 - 928059 - | histidyl-tRNA synthetase TERM 1130 929332 - 929321 - G 73 -3.6 -5.02231 | opp_overlap 929331, overlap 929315 GAAAAATATCAAAAA CGCC TTTT GGCA ATGCATTACTCATTG TERM 1131 930968 - 930948 - g 71 -2.4 -5.24129 | opp_overlap 930948 TTGTCTCATAAAAAA GCAGCTGG AACGG CTAGCGGC TTTACAGGATGGTTC uhpC 929781 - 931151 + | putative sugar phosphate permease TERM 1132 931297 - 931257 - g 86 -11.9 -3.0873 | opp_overlap 931258 931262, overlap 931262 CAAAGCAGTGGAATA TCAAATTCCCGCGCTCGCT CTT ACCGATCACGGGAATTTGT TTGGCGCGGTCGAAT TERM 1133 931258 - 931296 + G 100 -13.2 -3.54424 | opp_overlap 931257 931262, overlap 931262 AAAGCAGTGGAATAT CAAATTCCCGCGCTCGCT CTT ACCGATCACGGGAATTTG TTTGGCGCGGTCGAA TERM 1134 931292 - 931262 - g 89 -10.4 -3.93038 | opp_overlap 931258 931262, overlap 931257 CAGTGGAATATCAAA TTCCCGCGCTCGCT CTT ACCGATCACGGGAA TTTGTTTGGCGCGGT TERM 1135 931262 - 931292 + G 87 -8.2 -4.41616 | opp_overlap 931262 931257, overlap 931258 CAGTGGAATATCAAA TTCCCGCGCTCGCT CTT ACCGATCACGGGAA TTTGTTTGGCGCGGT TERM 1136 933305 - 933325 + G 70 -7.7 -3.60151 | opp_overlap 933305 CTCTCATGGAACCTA TTCTAAAAG AAA CTTTTGGAA TTATGGTTTACCAAG TERM 1137 933441 - 933424 - g 82 -5.6 -5.03314 | GCTATGGGGAAAAAA GACCAT GAACAG ATGGTC AAGGAACGAGAGAAA TERM 1138 934320 - 934298 - g 79 -7.8 -4.31692 | opp_overlap 934298 AAGTCACTACTAAAA TTTCCTCTGC AGA GCAGAAAAAA TTTGCACTTTTACAA dnaE 931165 - 934878 + | DNA polymerase III subunit alpha TERM 1139 935007 - 935056 + T 74 -10.1 -2.87211 | gap 1, opp_overlap 935020 935021, overlap 935020 935021 CTAAAAAATTTTGAG GCTCTCTAGCAAACGAAGGCGGAG CTA CTCCACCTTCATTT-CAAGAGAGA TCTATGAAAAAAGCT TERM 1140 935020 - 935044 + T 71 -8.5 -3.53563 | opp_overlap 935020 935021, overlap 935007 935021 AGGCTCTCTAGCAAA CGAAGGCGGAG CTA CTCCACCTTCA TTTCAAGAGAGATCT TERM 1141 935044 - 935020 - T 95 -12.9 -3.72695 | opp_overlap 935020 935007 935021, overlap 935021 AGGCTCTCTAGCAAA CGAAGGCGGAG CTA CTCCACCTTCA TTTCAAGAGAGATCT TERM 1142 935021 - 935043 + T 85 -12 -2.71924 | opp_overlap 935020 935021, overlap 935020 935007 GGCTCTCTAGCAAAC GAAGGCGGAG CTA CTCCACCTTC ATTTCAAGAGAGATC TERM 1143 935043 - 935021 - T 95 -14.2 -2.83403 | opp_overlap 935021 935020 935007, overlap 935020 GGCTCTCTAGCAAAC GAAGGCGGAG CTA CTCCACCTTC ATTTCAAGAGAGATC CTLon_0803 935976 - 935107 - | hypothetical protein TERM 1144 935927 - 935915 - G 70 -7.7 -3.65224 | ATTCTATGTGAATAA GGGAT CTT ATCCC AAAACACAATAGAAC TERM 1145 936060 - 936077 + H 85 -2.7 -5.8096 | opp_overlap 936060 AAACAAAAGCTATAA GAGATTT GACA AATTCTC TTTTTCTTTTTTATG CTLon_0804 936128 - 937084 + | hypothetical protein CTLon_0805 937109 - 937693 + | hypothetical protein rsbW 937680 - 938120 + | sigma regulatory factor-histidine kinase TERM 1146 938140 - 938165 + T 70 -2.5 -5.05601 | gap 1, overlap 938143 938145 ATCTATCCATCTATT GAA-GGCGGGCG TAA TGCCCGTAATTC TTTTTCTGTATCCTG TERM 1147 938145 - 938159 + T 75 -9.2 -3.21909 | overlap 938143 938140 TCCATCTATTGAAGG CGGGCG TAA TGCCCG TAATTCTTTTTCTGT CTLon_0807 938552 - 938127 - | hypothetical protein TERM 1148 939455 - 939426 - g 73 -3.6 -4.99861 | overlap 939417 939427 CAGGAACTACAAAAA GTGCAGGGAAAA ATATCA TTTTCGCTGCAG AAAAGAACAATCGCT TERM 1149 939743 - 939715 - g 75 -8.2 -3.75766 | opp_overlap 939715, overlap 939708 CCTAGAACCCAATAA GATCTCTTTCCC CATTC GGAAAGGAGATC TTCTAGGCCATTGGA dacC 938660 - 939973 + | D-alanyl-D-alanine carboxypeptidase CTLon_0809 940106 - 940513 + | hypothetical protein CTLon_0810 940510 - 941616 + | putative methyltransferase brnQ 941766 - 943001 + | branched-chain amino acid transport system carrier protein TERM 1150 943025 - 943056 + F 75 -6.7 -4.36914 | gap 1, opp_overlap 943029, overlap 943027 GTCGCAATGTTTGAA G-CCATCCCTTACT GAATA AGTAAGGGATGTTC TTTTGTCCGGAAAGC TERM 1151 943027 - 943053 + F 100 -13.9 -4.30995 | opp_overlap 943029, overlap 943025 CGCAATGTTTGAAGC CATCCCTTACT GAATA AGTAAGGGATG TTCTTTTGTCCGGAA TERM 1152 943051 - 943029 - f 76 -10.7 -2.53213 | opp_overlap 943027 943025 CAATGTTTGAAGCCA TCCCTTACT GAATA AGTAAGGGA TGTTCTTTTGTCCGG TERM 1153 943097 - 943083 - f 73 -2.8 -5.1848 | overlap 943084 AAGCAACCCAAAAAA CGCCTT TAG AAGACA CCTATCTACTCCTAA TERM 1154 945895 - 945877 - g 73 -3.8 -5.03994 | overlap 945879 945893 GTTCACACATAAAAA TGCATCCG AAA CAGATGAA GATATTATTTCTTCT TERM 1155 946222 - 946204 - g 78 -5.3 -5.04175 | TGAATCATACAAAAA CCATTCC TCTGG GAAATGG GCTGCTTTTGTGAAA CTLon_0812 943175 - 946774 + | helicase CTLon_0813 946953 - 947432 + | hypothetical protein lpdA 947641 - 949038 + | dihydrolipoamide dehydrogenase TERM 1156 949185 - 949158 - g 95 -7.8 -4.92756 | gap 1, opp_overlap 949158 949159, overlap 949159 ACTATCAAAAATAAA GGGCTTCCT-ACA GTC TGTGAGGAAGCCT CTTGTCCGAATCGCA TERM 1157 949184 - 949159 - g 89 -11.3 -3.54027 | gap 1, opp_overlap 949159 949158, overlap 949158 CTATCAAAAATAAAG GGCTTCCT-ACA GTC TGTGAGGAAGCC TCTTGTCCGAATCGC TERM 1158 949159 - 949184 + G 84 -11.3 -3.22475 | gap 1, opp_overlap 949158 949159, overlap 949158 CTATCAAAAATAAAG GGCTTCCT-ACA GTC TGTGAGGAAGCC TCTTGTCCGAATCGC TERM 1159 949364 - 949330 - g 70 -5.9 -4.25566 | opp_overlap 949330 949330, overlap 949331 AAGAAGGAGCTAAAA TTGCT-GAGTCCGCAAA AGC TTTG-GGACTCAAGCAC ATTGTCATCACTATG TERM 1160 949363 - 949331 - g 72 -9.4 -3.14255 | opp_overlap 949330 949330, overlap 949330 AGAAGGAGCTAAAAT TGCT-GAGTCCGCAAA AGC TTTG-GGACTCAAGCA CATTGTCATCACTAT TERM 1161 949845 - 949859 + G 75 -5.7 -4.59342 | TATCGCTCGGTAGGA GAGTC GTTAG GACTC TTTATTTATGCTGGC lipA 949035 - 949970 + | lipoyl synthase TERM 1162 950528 - 950541 + G 72 -9.5 -3.08197 | opp_overlap 950528 950527 CTGAAGAAGATCAAC GGCCG CTAA CGGCC TCTGTATATATCAAA TERM 1163 950966 - 950937 - g 72 -7.9 -3.8211 | gap 1, overlap 950941 950954 TTTCACTCAGAATAA GCCAGCTCCAAAAG AAA CTCCTGGAGC-AGC AGAAGGTGCAGAAGC TERM 1164 950963 - 950941 - g 74 -10.6 -2.69073 | overlap 950937 950954 ACTCAGAATAAGCCA GCTCCAAAAG AAA CTCCTGGAGC AGCAGAAGGTGCAGA sctJ 950074 - 951051 + | type III secretion system protein, membrane component CTLon_0817 951052 - 951888 + | hypothetical protein sctL 952164 - 952835 + | type III secretion system protein sctR 952848 - 953768 + | type III secretion system protein sctS 953780 - 954064 + | type III secretion system, membrane protein sctT 954071 - 954940 + | type III secretion system, membrane protein TERM 1165 954979 - 954953 - T 100 -13.1 -6.30182 | opp_overlap 954956 TGATACAAAAAAAAA GAACTCCCTCC AAAAA AGAGGGAGTTC TTCACACCACGTAAG TERM 1166 954956 - 954976 + T 73 -8.3 -3.61517 | opp_overlap 954953 TACAAAAAAAAAGAA CTCCCTC CAAAAAA GAGGGAG TTCTTCACACCACGT CTLon_0822 955462 - 955019 - | hypothetical protein TERM 1167 955373 - 955387 + g 80 -2.8 -5.45802 | overlap 955370 GACCTTTGGATTTGT GTGC AAATCAC GCAC TTTTTGTTTTAGAGA CTLon_0823 956544 - 955552 - | hypothetical protein TERM 1168 955914 - 955927 + g 71 -2.4 -5.1244 | ACAATAAATTCAACC TACC CTGATT GGTA TTTTTCTCTTCATAG CTLon_0824 957074 - 956550 - | hypothetical protein CTLon_0825 957514 - 957059 - | hypothetical protein gspG 957827 - 957498 - | general secretion pathway protein G gspF 959065 - 957890 - | general secretion pathway protein F gspE 960582 - 959077 - | general secretion pathway protein E TERM 1169 960439 - 960449 + g 82 -3.2 -5.44119 | CACCTCATCCAAAGC CTCT AAA GGAG TTTTTTTCAAATGCC gspD 962848 - 960566 - | general secretion pathway protein D TERM 1170 960885 - 960863 - G 91 -8.4 -4.58283 | opp_overlap 960863 CAACTCTCCTAAAAA TGGAATCCCG TCA CGAGAATCCA TAGTTTGATTACAAC CTLon_0830 964078 - 962849 - | hypothetical protein TERM 1171 963046 - 963070 + g 73 -10.1 -3.06384 | overlap 963043 963049 963051 CTAAAAGAGGGCTCC GAAGCTTACCT GAT AGGTAATCTTC TAATTGTCTTTTTGA TERM 1172 964201 - 964153 - R 88 -6.5 -5.18371 | opp_overlap 964161, overlap 964156 964161 TTTTACAAAAGAAAA TAAGAAAAGCCG-TTTTTTTGTT AAAAA AACAAAAAAATCGGCTTTTA-TA TGAAATTAAATGATA TERM 1173 964199 - 964156 - R 89 -10.7 -4.66746 | gap 1, opp_overlap 964161, overlap 964153 964161 TACAAAAGAAAATAA GAAAAGCCG-TTTTTTTGTT AAAAA AACAAAAAAATCGGCTTTTA TATGAAATTAAATGA TERM 1174 964194 - 964161 - R 93 -10.6 -5.14949 | gap 1, opp_overlap 964161, overlap 964156 964153 AAGAAAATAAGAAAA GCCG-TTTTTTTGTT AAAAA AACAAAAAAATCGGC TTTTATATGAAATTA TERM 1175 964161 - 964194 + r 89 -10.6 -4.55118 | gap 1, opp_overlap 964161 964156 964153 AAGAAAATAAGAAAA GCCG-TTTTTTTGTT AAAAA AACAAAAAAATCGGC TTTTATATGAAATTA pepP 965277 - 964207 - | proline dipeptidase TERM 1176 964937 - 964909 - G 76 -9.7 -3.26449 | overlap 964904 TTTCACACAACGTAA CTTCTCCGCAA CTAAACT TTGCGGAGAAA ATGCATACCCGCTGT mutL 967018 - 965288 - | DNA mismatch repair protein TERM 1177 967130 - 967120 - H 74 -5.4 -4.75174 | GAGGTAACGGAAAAA TTGC AAG GCAA CGACACACGCTGCTG TERM 1178 967445 - 967421 - g 82 -5.7 -5.07486 | overlap 967423 GATTTGGAACAAAAA TATCCTGTTCC TAC GGAAGAGGAGA CAAAACAAGTTCTCA TERM 1179 967443 - 967423 - g 79 -8.3 -4.16307 | overlap 967421 TTTGGAACAAAAATA TCCTGTTCC TAC GGAAGAGGA GACAAAACAAGTTCT scc2 967298 - 967996 + | type III secretion chaperone (low calcium response protein H) CTLon_0834 968013 - 968372 + | hypothetical protein TERM 1180 969528 - 969518 - g 73 -5.4 -4.66609 | CAGCGCAGGGAAAAA TGCT GTT AGCA AATCGTTCCCTAAAC copB 968409 - 969872 + | putative type III secretion system membrane protein TERM 1181 969869 - 969879 + F 70 -2.6 -5.14965 | CTTAGCCGCCGCAGC TTAA CTA TTAA TTTTTTGATGGAGAT copD 969903 - 971222 + | putative type III secretion system protein TERM 1182 971265 - 971292 + T 91 -7 -5.35815 | gap 1, opp_overlap 971265 AACTCAGCTTCAGAA CCGTAGGCATCCT AAA AGGGC-CCTACGG TTTTTCTTTACTCTG CTLon_0837 972283 - 971300 - | putative integral membrane protein TERM 1183 972299 - 972287 - H 70 -9.1 -3.21416 | opp_overlap 972297 GACCGCCACCATGAA CCGTG TCG CACGG ATCTACGATCCGTTC TERM 1184 972297 - 972311 + H 79 -10 -3.48276 | opp_overlap 972287 ATGAACCGTGTCGCA CGGATC TAC GATCCG TTCTATAGAACAACC TERM 1185 972546 - 972566 + H 85 -2.5 -5.72622 | overlap 972563 AAAAAGAGACGATTC TTTGCAGCG GTT TGCAGTAAA TTTTTTATTTATGGA TERM 1186 973305 - 973293 - g 86 -3.3 -5.71638 | opp_overlap 973293 GAAGAAGCAAAAAAA CGCGA CCA TCGAG TTCTTGGAACAAAGT TERM 1187 974096 - 974107 + G 73 -5.8 -4.48902 | AAGTACACCTATTAT GCTC CATA GAGC TTTGTTTGGATCTAT thrS 972588 - 974495 + | threonyl-tRNA synthetase TERM 1188 974501 - 974533 + F 100 -12.1 -4.43397 | opp_overlap 974499 974498, overlap 974498 974502 TTCCTTATAGAAGGC CGGGCTTGCATAG ATTCTGC CTATGCAAGCCCA TTATTTCTTTTCACA TERM 1189 974502 - 974532 + F 100 -15.6 -3.24954 | opp_overlap 974499 974498, overlap 974501 974498 TCCTTATAGAAGGCC GGGCTTGCATAG ATTCTGC CTATGCAAGCCC ATTATTTCTTTTCAC TERM 1190 974920 - 974901 - f 81 -6.4 -4.95957 | gap 1, overlap 974902 TAAAGCAACTAAAAA GGAGCGAGG CTT CCTC-CCCC TACAAGGGCTTCACC minD 974947 - 975714 + | ParA family chromosome partitioning ATPase TERM 1191 975806 - 975819 + GF 76 -6.7 -4.43501 | opp_overlap 975806, overlap 975803 AAAAAGCGTTTAGAA GGAGA GCTT TCTCC TTTTCTAAATGGGTT TERM 1192 976447 - 976436 - gf 71 -3 -4.98758 | opp_overlap 976436 AAAAAGTTACAAAAA GTTA CAAC TAAC CTTCTTTCTAACACT gp6D 975719 - 976510 + | virulence plasmid protein pGP6-D-related protein CTLon_0841 976476 - 977027 + | hypothetical protein TERM 1193 977478 - 977500 + G 95 -7.9 -5.12617 | GCAATCGGCTATCCC TGAGATTTA TGAAT TAAATCTCA TTTTTTCCATGCTTA trpS 977206 - 978246 + | tryptophanyl-tRNA synthetase TERM 1194 978683 - 978667 - g 72 -9.5 -3.13403 | overlap 978665 CGCCTTTCAGCAACA CGTTCTA TCT TAGAACG CCGAGATACTCTTAT TERM 1195 980260 - 980236 - g 84 -3.5 -5.54894 | overlap 980238 980239 AATGCAGCAAAAAAA CAGCTCCTCTT TCA AAAAGGAGAAG AAGAAAATGGGGACT uvrB 978271 - 980277 + | excinuclease ABC subunit B eno 980439 - 981713 + | phosphopyruvate hydratase rbsU 981840 - 983792 + | sigma regulatory family protein-PP2C phosphatase CTLon_0846 983917 - 985725 + | hypothetical protein CTLon_0847 988604 - 985740 - | hypothetical protein TERM 1196 987981 - 987961 - G 74 -6.2 -4.43208 | opp_overlap 987961 ATAGGCTTAAATAAA TCTCCTAC ACACG GTAGAAGA TTGATCGGAACGGAA TERM 1197 988455 - 988470 + g 95 -3.2 -6.15828 | overlap 988456 ATAACTGGCTAACTT CCTTGC AATA GCAAGA TTTTTTTTTGCTAAA TERM 1198 988456 - 988469 + g 74 -6.7 -4.2787 | overlap 988455 TAACTGGCTAACTTC CTTGC AATA GCAAG ATTTTTTTTTGCTAA TERM 1199 988659 - 988649 - R 74 -5.4 -4.69053 | opp_overlap 988649 TACCATGGAATAAAA TTGC GAT GCAA TCTTCGAAACTTAAG sdhB 989399 - 988701 - | succinate dehydrogenase iron-sulfur subunit sdhA 991358 - 989478 - | succinate dehydrogenase flavoprotein subunit TERM 1200 992159 - 992143 - R 74 -8.7 -3.41025 | overlap 992141 992139 AATAAAGTAAACACA CATCCCG ATA CGGAATG AATACATCGTATAAT CTLon_0851 993154 - 992363 - | putative hydrolase dsdD 995317 - 993239 - | thiol:disulfide interchange protein TERM 1201 993568 - 993558 - G 71 -4 -4.82901 | TTTTCGGGAGAAAAA GATT GCC AATC AAAGCTATGTGCAGG TERM 1202 994966 - 994941 - G 81 -12 -2.53263 | overlap 994963 994964 TTTATCTCCAATGGA CGCGTTTCTA TCTCTT TAGAAACGCG AATATCCGCAACCAC TERM 1203 995355 - 995368 + H 79 -2.4 -5.61881 | opp_overlap 995355 TAGCAAATCATCAAA CAAC AGAAGA GTTG TTTTTGTTTTTGCAA exbB 995470 - 996168 + | macromolecule transporter CTLon_0854 996165 - 996572 + | macromolecule transport protein TERM 1204 996936 - 996920 - g 78 -5.2 -5.03314 | overlap 996924 GCTACTCTCAAAAAA TTAGCT CAACT AGCTAA TCAGCTGGCCGAAGA CTLon_0855 996575 - 997282 + | histone H1-I TERM 1205 997965 - 997949 - g 91 -6.5 -5.47218 | overlap 997950 CTGCAGGGAAAAAAA TCCTTGC TAT GCAAGGG AATCAGTTTATGCCG TERM 1206 997964 - 997950 - g 84 -10 -3.87608 | overlap 997949 TGCAGGGAAAAAAAT CCTTGC TAT GCAAGG GAATCAGTTTATGCC TERM 1207 998141 - 998158 + G 76 -2.7 -5.38054 | gap 1 ACCCTTCCTTTAGCC CTG-ACGG CAC CCGTTTAG TTTTTGTTTCTAACA TERM 1208 998408 - 998396 - g 77 -6.2 -4.68511 | CTGAACATAAAGAAA GCCC TTCTT GGGC TGCGGATAGTAACCA tolB 997282 - 998577 + | translocation protein TolB TERM 1209 998753 - 998734 - g 79 -8 -4.2461 | opp_overlap 998733 998734 ACTCCGATGAAGAAA TTCAACAA GCTT TTGTTGAA GATTTTGATTCCAAA pal 998574 - 999140 + | peptidoglycan-associated lipoprotein TERM 1210 999186 - 999204 + G 71 -8.8 -3.36341 | overlap 999184 AAGTTCGTCTGTTTA CGGCGC AGGTAAA GCGCCG TCTTTGCAGGCTATT CTLon_0858 999130 - 999732 + | putative soluble transglycosylase TERM 1211 999931 - 999945 + G 74 -10 -3.21593 | overlap 999929 GCCCTCAGGTATTTC GCTTGC TGT GCAAGC TATTATGCAGGGATA CTLon_0859 999803 - 1000195 + | hypothetical protein ahpC 1000779 - 1000192 - | thioredoxin peroxidase groEL2 1002588 - 1000987 - | 60 kDa chaperonin GroEL2 TERM 1212 1002543 - 1002525 - G 71 -9.6 -3.02677 | AAAACATATGAGATA TTACACGC GCG GCGCGTAA GACTGCCTGTAAACC CTLon_0862 1003894 - 1002668 - | hypothetical protein TERM 1213 1003778 - 1003792 + g 75 -2.2 -5.29445 | AACCCGCTTGCCACG TATTTT CTC AAGATA TTTTTCTTCTTGAAA TERM 1214 1004526 - 1004548 + G 70 -9.2 -2.83299 | overlap 1004522 1004521 1004525 GAAGGAACTATTGCG TTTGAGGAAC GCG GTTCCTCAGG GTTTGGATATGATCC TERM 1215 1004553 - 1004563 + G 70 -5.4 -4.55295 | GGTTCCTCAGGGTTT GGAT ATG ATCC TTTGTTTGTAAAACA CTLon_0863 1004091 - 1004720 + | putative deoxyribonucleotide triphosphate pyrophosphatase CTLon_0864 1004933 - 1004694 - | hypothetical protein ung 1005607 - 1004918 - | uracil-DNA glycosylase TERM 1216 1006102 - 1006086 - g 80 -6.5 -4.8543 | opp_overlap 1006085 1006089 GAACCTCGATAAAAA GCTTTGC AAT GCAATGC AATTTACTATCTCTC TERM 1217 1006935 - 1006915 - g 71 -3.3 -5.03715 | ATTAGCCTGAAAAAA TGCGGTA TTGGAGC TACCACA TTAGCCGCTCTTATG uvrD 1005688 - 1007592 + | DNA helicase TERM 1218 1007749 - 1007765 + G 81 -5.2 -5.18355 | GATCTCGATAGCTTA GATTCT CCTCC AGAATC TTTTTCGTTTTTCCC rpoN 1007596 - 1008906 + | RNA polymerase factor sigma-54 TERM 1219 1008991 - 1008964 - T 100 -14.3 -5.34381 | opp_overlap 1008987 AAATGGAAATAAAAA GCCCAGAACAA GAGAAG TTGTTCTGGGC TGACAGAAGCTGTCA TERM 1220 1008987 - 1009011 + T 85 -9.3 -4.28361 | opp_overlap 1008964 CAAGAGAAGTTGTTC TGGGCTGACAG AAG CTGTCAGATCA TTTTAATAAGATTGA CTLon_0868 1009709 - 1009014 - | hypothetical protein TERM 1221 1009120 - 1009151 + g 75 -3.1 -5.24796 | gap 2 TCTAACACTTTATCA GCGTCATCTTTGAGA AGCA TCTCAATGA-G-CGC TTTTTCTTCTCTAGC CTLon_0869 1010437 - 1009706 - | hypothetical protein TERM 1222 1009844 - 1009857 + gr 75 -8.1 -3.84514 | overlap 1009848 AGGTGCCTGCTCTAT CACCG CTAA CGGTG TTTGCTCATTCCCCT TERM 1223 1010181 - 1010200 + gr 82 -5 -5.28481 | opp_overlap 1010173 TCATCAATCCCTGCA GAAGGAAT CAAA ATACCTTC TTTTTTCGTTAGATA TERM 1224 1010349 - 1010379 + gr 78 -10.6 -3.06815 | gap 1, opp_overlap 1010343 1010338 ACTACCACACTCCGT TCTTGC-AGAGGC GGCAAA GCCTCTTGCAAGA TCTCTTGAAGCGAAT folA 1010888 - 1010409 - | dihydrofolate reductase TERM 1225 1010751 - 1010772 + gr 78 -9.5 -3.65754 | AGACTCCCAAGTCTT TCGTCCCAT AATG ATGGGATGA TTTCGAATGGTTTCT folP 1012237 - 1010885 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase TERM 1226 1011860 - 1011846 - G 70 -2.8 -5.06472 | overlap 1011834 ATAGAAAGAATAAAA GGTCTT TCT AATACC TTAGGATGTGGGATT folX 1012608 - 1012234 - | dihydroneopterin aldolase rpoD 1014342 - 1012627 - | RNA polymerase sigma factor TERM 1227 1012873 - 1012845 - G 100 -11.1 -4.45945 | opp_overlap 1012850 1012868, overlap 1012850 ACCGATGAATCAAAA CAAAACGCTCACG GTC CGTAAGCGTTTTC AAAACTTCTTTCATT TERM 1228 1012868 - 1012850 - G 100 -11 -5.18643 | opp_overlap 1012850, overlap 1012845 TGAATCAAAACAAAA CGCTCACG GTC CGTAAGCG TTTTCAAAACTTCTT TERM 1229 1012850 - 1012868 + g 83 -8.8 -4.12599 | opp_overlap 1012850 1012845 TGAATCAAAACAAAA CGCTCACG GTC CGTAAGCG TTTTCAAAACTTCTT CTLon_0874 1015780 - 1014491 - | putative integral membrane protein TERM 1230 1015166 - 1015185 + g 74 -6.4 -4.44448 | overlap 1015142 1015168 ATATTCATCATGCAG CTCTTGCT GATA AGCAAGCG TTTCTTTGAGCTCCT TERM 1231 1015675 - 1015686 + g 86 -3 -5.63517 | opp_overlap 1015675 GAAAGTATCGCGAAA TACA ATAA TGTA TTTTTTGTTTGGCAG TERM 1232 1016166 - 1016148 - H 72 -9.6 -2.74263 | opp_overlap 1016142 1016163, overlap 1016147 ATGTCATGCCGAAAG TCACAGCA GAT CGCTGTGA GGTGTCGCGTTTGTT TERM 1233 1016292 - 1016271 - g 73 -5.1 -4.62069 | opp_overlap 1016271, overlap 1016273 GTCGGACCTCAAAAA CGCCCTTCT GCAG AGAAGAGAG TTATCACTTCTAAGA rpsT 1016229 - 1016525 + | 30S ribosomal protein S20 TERM 1234 1017208 - 1017235 + G 86 -11.4 -3.27565 | CAAACTTTCCCTGTT TACCAGTTGGGT GCAC ACGCAACTGGTA TTGGCTTATCTGCTT CTLon_0876 1016758 - 1017558 + | hypothetical protein TERM 1235 1017584 - 1017607 + T 100 -13.2 -6.23209 | CACCACATCCTTGAA GCTCGCAGGT ACAT ATCTGCGAGC TTTTTTTTTAATTAG CTLon_0877 1020242 - 1017615 - | hypothetical protein TERM 1236 1019484 - 1019470 - G 75 -8.6 -3.90744 | TCTTTCGTCAAAGAA TCTGGA ACA TCCAGA CCTAAATTCAAACAC TERM 1237 1020254 - 1020273 + H 71 -3.7 -5.00196 | opp_overlap 1020254 ACATAAAAACAAAAC TAAAAAC TTTTAT GTTTTTA TTTTCTTATTTAAAA CTLon_0878 1020357 - 1022873 + | hypothetical protein TERM 1238 1022883 - 1022912 + T 100 -13.1 -3.65827 | opp_overlap 1022883 AGTTAGACAAATAAA GCAGCTTAAAAAT TTTT GTTTTTAAGCTGC TTTCCCTCACGATTA TERM 1239 1022912 - 1022883 - T 100 -12.4 -4.63044 | opp_overlap 1022883 AGTTAGACAAATAAA GCAGCTTAAAAA TTTTTG TTTTTAAGCTGC TTTCCCTCACGATTA CTLon_0879 1025435 - 1022937 - | hypothetical protein TERM 1240 1025633 - 1025605 - R 100 -17.7 -5.79595 | opp_overlap 1025601 TTTGAAAAGAAAAAA GAGCCAAAAAAGA AAT TCTTTTTTGGCTC CCCCTCAATTCACAA CTLon_0880 1027618 - 1025663 - | hypothetical protein TERM 1241 1027699 - 1027672 - R 100 -14.2 -5.83226 | opp_overlap 1027672 AAGGCAATAAAAAAA GCCCACACCC GTTATTTT GGGTGTGGGC TCTTAAAAGACTATC TERM 1242 1027672 - 1027699 + r 100 -14.9 -3.02829 | opp_overlap 1027672 AAGGCAATAAAAAAA GCCCACACCCG TTATTT TGGGTGTGGGC TCTTAAAAGACTATC CTLon_0881 1029026 - 1027725 - | hypothetical protein TERM 1243 1029287 - 1029245 - R 89 -7.8 -5.06414 | opp_overlap 1029259, overlap 1029247 TTCTTGGAAGAAAAA GATGTCCTAAGAGACTAGCT TAC AGCTAGTTTCTTAGGATAGA CTGATGCCCTTTCCA TERM 1244 1029285 - 1029247 - R 100 -14.8 -4.16307 | opp_overlap 1029259, overlap 1029245 CTTGGAAGAAAAAGA TGTCCTAAGAGACTAGCT TAC AGCTAGTTTCTTAGGATA GACTGATGCCCTTTC TERM 1245 1029259 - 1029273 + r 79 -8.6 -4.1822 | opp_overlap 1029247 1029245 AGATGTCCTAAGAGA CTAGCT TAC AGCTAG TTTCTTAGGATAGAC mviN 1030853 - 1029270 - | putative virulence protein nfo 1031053 - 1031919 + | endonuclease IV TERM 1246 1031981 - 1031964 - T 100 -12.7 -5.86061 | CTTTATGAAAAAAAA GCCTCGC AAAA GCGAGGC TTCAAAGAACATATA rpsD 1032644 - 1032015 - | 30S ribosomal protein S4 TERM 1247 1032872 - 1032883 + H 76 -3 -5.48514 | GTTTAGAAAGATACT GAAA AAGG TTTC TTTTTATTTCTTCAT TERM 1248 1032974 - 1032986 + H 80 -7.7 -4.43012 | TTTTAAACAAACTTT TCGAG CTT CTCGA TTTTAATCTTAAGAT TERM 1249 1033370 - 1033349 - g 78 -5.9 -4.84311 | GTCGATACAACAAAA CAAGGAAAA CACA TTTCCCCTG AAGAGTGGCATGAAA CTLon_0885 1033028 - 1034011 + | hypothetical protein TERM 1250 1034044 - 1034018 - T 100 -10.1 -5.9873 | opp_overlap 1034020 1034023 CCAGCATAAAAAAAA GAGACGCCCAC GTTCT GTGGGCTCCTC TTCCAAAGTCTTCTG TERM 1251 1034023 - 1034039 + T 74 -10.1 -2.74192 | opp_overlap 1034018, overlap 1034020 ATAAAAAAAAGAGAC GCCCACG TTC TGTGGGC TCCTCTTCCAAAGTC ispA 1034959 - 1034084 - | dimethylallyltransferase TERM 1252 1034988 - 1035010 + r 100 -13.6 -4.258 | opp_overlap 1034991 CCTTCTTTTTCTCAT CAACCTTTGT TTG ACAAAGGTTG TTTCTTAGTAAATGG TERM 1253 1035007 - 1034991 - R 74 -9.5 -3.14132 | opp_overlap 1034988 TCTTTTTCTCATCAA CCTTTGT TTG ACAAAGG TTGTTTCTTAGTAAA glmU 1035632 - 1035015 - | glucosamine-1-phosphate acetyltransferase CTLon_0888 1036368 - 1035685 - | transcriptional regulatory protein CTLon_0889 1036548 - 1036802 + | hypothetical protein CTLon_0890 1038572 - 1036983 - | hypothetical protein