TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.585285 %AT, 1062004 nt, 8034 terms. Intergenic: 0.650787 %AT, H2T: 131264 nt, 878 terms; T2T: 40546 nt, 618 terms; H2H: 63293 nt, 803 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|15617929|ref|NC_000922.1| Chlamydophila pneumoniae CWL029, complete genome (length 1230230) CPn0001 282 - 1 - | hypothetical protein TERM 1 104 - 94 - G 73 -5.4 -4.64846 | GCAGAAAGGACAAAA GCTT AGC AAGC AAATGACACCAGCAA TERM 2 263 - 251 - G 70 -7.7 -3.64549 | AGAATAACAATAAGA GAGGA TAA TCCTC GAATAATTTTGCCTA gatC 573 - 878 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 895 - 2373 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 3 2874 - 2887 + G 71 -6.7 -4.17906 | TGTCCTGAAGATGCT GTTGC TTAC GCAAC TTCTTTGGTTTCCTT TERM 4 3610 - 3588 - g 74 -9.9 -3.09834 | opp_overlap 3587 GATCTTATGATGGAA TCCCCAGGA AAGAA TCCTGAGGA GATTTTAAAAGAGAA gatB 2370 - 3836 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 5 3907 - 3866 - f 95 -9 -5.00616 | opp_overlap 3874, overlap 3869 3874 GTCTGTCTTAAAAAA TCATAAAAGCATGTTAGA GATCTT TCTAACATGCTTTTTTTA TCTAAATACACATTT TERM 6 3904 - 3869 - f 87 -10.7 -3.37655 | opp_overlap 3874, overlap 3866 3874 TGTCTTAAAAAATCA TAAAAGCATGTTAGA GATCTT TCTAACATGCTTTTT TTATCTAAATACACA TERM 7 3874 - 3899 + F 100 -11.3 -5.72616 | opp_overlap 3869 3866 3874 TAAAAAATCATAAAA GCATGTTAGAG ATCT TTCTAACATGC TTTTTTTATCTAAAT TERM 8 3899 - 3874 - f 100 -10.6 -4.76171 | opp_overlap 3874, overlap 3869 3866 TAAAAAATCATAAAA GCATGTTAGA GATCTT TCTAACATGC TTTTTTTATCTAAAT TERM 9 4997 - 4984 - g 70 -5.3 -4.41616 | AGTCTTTGAAAGAAA CCATT CCAT AATGG GTGGCGGAGCCATTT TERM 10 5370 - 5351 - g 70 -9.4 -2.82491 | TACACAGGGACCATA CTCTTTTC TGGA GAAAAGAG TCTAGCAAACGATCC pmp_1 4127 - 6895 + | polymorphic Outer membrane protein G family TERM 11 7029 - 7057 + T 89 -8.9 -4.62441 | overlap 7032 ATACTCGTATCACCT CAGCCCCTAGAGA CAT TCTTTAGGGGTTC TTTATTTGTCTAAAC TERM 12 7032 - 7054 + T 100 -12.8 -4.41158 | overlap 7029 CTCGTATCACCTCAG CCCCTAGAGA CAT TCTTTAGGGG TTCTTTATTTGTCTA CPn0006 7293 - 7138 - | hypothetical protein TERM 13 8529 - 8553 + G 80 -11.4 -2.72461 | opp_overlap 8529 8544, overlap 8528 GATGAAGAGAGTATA CGGCTGCAGC AGGAA GCTGAAGCCG CTTTAGCAAGACTTC TERM 14 8553 - 8529 - g 83 -11.4 -2.92889 | opp_overlap 8529 8528, overlap 8544 GATGAAGAGAGTATA CGGCTGCAGC AGGAA GCTGAAGCCG CTTTAGCAAGACTTC CPn0007 7605 - 10499 + | hypothetical protein CPn0008 10975 - 11688 + | hypothetical protein CPn0009 11815 - 13122 + | hypothetical protein CPn0010 13435 - 14328 + | hypothetical protein TERM 15 14704 - 14694 - g 71 -6.8 -4.09108 | TCTAATTTAGAGAAA GCCT ATG AGGC TATCGAAGAGAACTA CPn0010.1 14379 - 15749 + | hypothetical protein TERM 16 15743 - 15763 + F 74 -9.1 -3.00766 | TAATCGTGAGGACCA TTCCTAGAA CTA TTCTAGGAG TCTATGTGCACTATT TERM 17 16106 - 16119 + G 73 -5.3 -4.68655 | overlap 16115 TTAGTACGATTTCTC TAGGA GTTG TCCTA TTTGTTTTAGGATTG CPn0011 15892 - 16617 + | hypothetical protein CPn0012 16644 - 18215 + | hypothetical protein TERM 18 18275 - 18294 + F 78 -7.9 -4.10791 | TTCCATTTCTCTAGG GATCCTC TTAGCT GAGGATC TTCTTTGTACCTCTT TERM 19 18301 - 18328 + F 77 -9.3 -3.281 | opp_overlap 18324, overlap 18299 CTGAGGATCTTCTTT GTACCTCTTTT GATTCG AAAAGAGGTGC TATTGTGAGTTGCCA TERM 20 18433 - 18449 + F 72 -5.8 -4.31737 | opp_overlap 18421, overlap 18439 18443 AACTCCCAAGATTTT GGCTTG GAAAG CGAGCC TTTCTTGCTACTTTT TERM 21 19839 - 19817 - g 74 -4 -4.98672 | overlap 19818 19821 GGGAAAAAGATAAAA CTCAGTGCTG CCA CAGCTCAGAA AGATATTCGTATAGA pmp_2 18584 - 21109 + | polymorphic Outer membrane protein G family TERM 22 21135 - 21164 + T 81 -10.1 -3.37056 | TTCGATGCTATTTTT CCATGGCTATTTT TAAA ATGATAGCCATGG TTATAGATACGTAGT TERM 23 21746 - 21723 - T 75 -9.6 -2.73875 | opp_overlap 21724, overlap 21720 CTGCTGTTAACAGCA GCGTGGTAGA TAAA TCTACCACGT TTATAGGGTTTTCTT TERM 24 21724 - 21745 + T 100 -13.1 -3.98009 | opp_overlap 21723 21720 TGCTGTTAACAGCAG CGTGGTAGA TAAA TCTACCACG TTTATAGGGTTTTCT TERM 25 21834 - 21798 - T 73 -8.7 -3.33261 | opp_overlap 21802 21819 CTGGAAGTTCGATAA CTACCGGCAAAGGAGCC GTT AGCTGCTCTACGGGTAG CTTGAGTTTGACAAA TERM 26 23295 - 23309 + T 74 -5.6 -4.82667 | TGCAAACGAAGGGTT GCAGGG AGA CCGTGC TTTTTGGTGTGCTGG TERM 27 24208 - 24258 + T 93 -11.5 -3.95448 | gap 1, opp_overlap 24208 24220, overlap 24220 AAAGAGCTCCATACA TCGAAG-GGAAAAGAGCTTTTAAG ATTT CTTGAAGGCTCTTTTCGATTTCGA TTTCCATTTTAGTGT TERM 28 24220 - 24245 + T 93 -9.1 -4.37198 | opp_overlap 24208 24220, overlap 24208 ACATCGAAGGGAAAA GAGCTTTTAAG ATTT CTTGAAGGCTC TTTTCGATTTCGATT TERM 29 24270 - 24286 + T 83 -8.1 -4.35405 | TCGATTTCCATTTTA GTGTTTT GCT AAAACAC TTTCTAATTTTTTTC TERM 30 25501 - 25519 + T 70 -4.6 -4.70659 | opp_overlap 25501, overlap 25503 CAGAAATGCTATAGA TCTTGCAT CGA ATGCAAAA TTTTTAAATCTCCGA TERM 31 25521 - 25553 + T 74 -6.3 -4.39748 | opp_overlap 25528, overlap 25522 25544 CATCGAATGCAAAAT TTTTAAATCTCCGAG CGA CTCGGGGAAATAAAG TTATTTTCTATGATC TERM 32 25546 - 25528 - T 77 -8.8 -3.66666 | opp_overlap 25522 25521 25544 TGCAAAATTTTTAAA TCTCCGAG CGA CTCGGGGA AATAAAGTTATTTTC TERM 33 27079 - 27093 + T 75 -7.2 -4.22346 | overlap 27075 27088 ATCATCATGCCTTTG CTTCAA ACT TTGAAG TTTTCAGTCAGTTTG TERM 34 27199 - 27255 + T 76 -3.8 -5.34632 | gap 1, opp_overlap 27212, overlap 27208 27210 27212 TCCAACGAGATAGCA TCAGGGTAA-GCCAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTCTCTTTGTCTTGC TTTTTGTATTTTATT TERM 35 27208 - 27245 + T 100 -9.9 -4.34766 | opp_overlap 27212, overlap 27199 27210 27212 ATAGCATCAGGGTAA GCCAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTCTC TTTGTCTTGCTTTTT TERM 36 27210 - 27243 + T 90 -11.1 -3.74137 | opp_overlap 27212, overlap 27208 27199 27212 AGCATCAGGGTAAGC CAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTC TCTTTGTCTTGCTTT TERM 37 27241 - 27212 - T 89 -13.7 -2.54193 | opp_overlap 27210 27208 27199 27212 CATCAGGGTAAGCCA GGGCTCTATGTAA GAGA TTTCATAGAGCCC TCTCTTTGTCTTGCT TERM 38 27212 - 27241 + T 95 -13.7 -3.42943 | opp_overlap 27212, overlap 27210 27208 27199 CATCAGGGTAAGCCA GGGCTCTATGTAA GAGA TTTCATAGAGCCC TCTCTTTGTCTTGCT TERM 39 28493 - 28505 + T 71 -5.5 -4.46926 | overlap 28486 GATTTTGGGAGGGCA GGGAG GCG CTCTC TTTTCTAATAACGTA TERM 40 28529 - 28551 + T 70 -4.1 -4.82901 | gap 1, opp_overlap 28521 TAACGTAGTGACTCA TGCCACC-CC TCTA GGAGGTGCCA TTTTTATCAACACAG TERM 41 28973 - 28950 - T 82 -9.6 -3.54653 | opp_overlap 28936 28947 ACCTTGATCACACAA GGATTCTCGC AGGA GCCAGAATCC ACGCTTCTTTTGGAT TERM 42 29264 - 29236 - T 81 -11.1 -2.86747 | opp_overlap 29232 29243, overlap 29233 29241 GAGGGACTATAATTA CTCAAGATGCTTC TCA GAAGCCTCTTGAA GTAGCTCCTTCTAGA TERM 43 30360 - 30380 + T 77 -9.1 -3.31515 | opp_overlap 30362, overlap 30363 AAATACCGATTTTAA TAGGGAACT GAG AGTTCCTTA TTGTAGAGAGTATTT TERM 44 30363 - 30377 + T 79 -8.6 -3.7941 | opp_overlap 30362, overlap 30360 TACCGATTTTAATAG GGAACT GAG AGTTCC TTATTGTAGAGAGTA TERM 45 30472 - 30504 + T 100 -17.3 -2.87211 | AATTTCTATAGTTCA TGGGGTTTCTTTTTT TAT AAAGAAGAAACCCCA TGTCTGACGAGACCT CPn0020 32687 - 30600 - | putative outer membrane protein TERM 46 31806 - 31775 - G 73 -7.4 -4.07687 | opp_overlap 31775 31795, overlap 31762 AGTTGTTGGGGAAAA TGTCAGCAACAGTT TCCC AACTATCGCTGAGA TGGTATTCTCCAGAA CPn0021 34410 - 32704 - | putative outer membrane protein TERM 47 34075 - 34091 + g 75 -8.7 -3.68619 | opp_overlap 34065 TAAAACCAGTAGCTG CTGCAGG GGG TCTGCAG TTTCCATAGCTTGGG TERM 48 34145 - 34160 + g 77 -4.6 -5.04325 | GATCCCGCCAGGCCT GCTCCA ATGA TGGTGC TTTTTCTAGTTTGCG maf 34982 - 34392 - | Maf-like protein yjjK 36603 - 35011 - | ABC transporter ATPase TERM 49 35864 - 35876 + g 74 -6.9 -4.39166 | overlap 35865 TCGGCCTTTTCTTGC TCGCG AGA CGCGG TTTTCATCTCTACCA xerC 37596 - 36658 - | site-specific tyrosine recombinase XerC atsA 38604 - 37681 - | ribonuclease Z TERM 50 38668 - 38698 + r 77 -3.5 -5.44638 | opp_overlap 38668 ATACGCCACTACAAC TTTTGAATGACAA CTTTT TTATCATTTAAAA TTTTGTTTTTCTTAT CPn0026 39625 - 38759 - | hypothetical protein TERM 51 39679 - 39696 + r 80 -4.9 -5.25803 | opp_overlap 39692 39694, overlap 39693 ATGTATTCAAGGTCT GTTTGTA AATA TACAGAC TTTTTTATACGCATT TERM 52 39741 - 39694 - R 73 -8.9 -3.18571 | gap 1, opp_overlap 39679 39693 39696, overlap 39692 39696 GTTTGTAAATATACA GACT-TTTTTATACGCATTAAA TCTAC CTTAATGCGTATAAAAATAGTG ATTCTCAAGAGAACA TERM 53 39696 - 39739 + r 81 -10.8 -2.82623 | gap 1, opp_overlap 39696 39692 39694, overlap 39693 TTGTAAATATACAGA CT-TTTTTATACGCATTAA ATCTACC TTAATGCGTATAAAAATAG TGATTCTCAAGAGAA TERM 54 39739 - 39696 - R 87 -11.5 -3.15257 | gap 1, opp_overlap 39693 39696, overlap 39692 39694 TTGTAAATATACAGA CT-TTTTTATACGCATTAAA TCTAC CTTAATGCGTATAAAAATAG TGATTCTCAAGAGAA lon 42234 - 39775 - | Lon ATP-dependent protease CPn0028 43325 - 42540 - | hypothetical protein CPn0029 43755 - 43387 - | hypothetical protein TERM 55 44377 - 44393 + G 73 -3.6 -4.91511 | overlap 44379 ATTTCTCCTAATCCG CAGCTC TTTGC GAGCAG TTTTTCTGATAAGAT gcp_1 43891 - 44532 + | O-sialoglycoprotein endopeptidase TERM 56 44537 - 44549 + F 74 -3.5 -5.2166 | GTATTTTTTGATTTG TATTT TCT AAATA TTTTTTACATTGTTG rpsU 44711 - 44887 + | 30S ribosomal protein S21 dnaJ 44923 - 46101 + | heat shock protein J TERM 57 46384 - 46398 + G 77 -8.6 -4.06001 | ATAGGCTTGGGTTGT GATCTC TCT GAGATC TTTGCTTCGTTTCTA TERM 58 47231 - 47251 + G 75 -8.3 -3.86252 | opp_overlap 47229 47227 47231 CCCTTGTAGAAGAGA TGACTCGAG ATT CTGGAGTCA TTGTCTTTGGTGAGG pdhA/pdhB 46138 - 48174 + | (pyruvate) oxoisovalerate dehydrogenase Alpha & Beta fusion CPn0034 49457 - 48207 - | hypothetical protein TERM 59 48513 - 48523 + g 89 -6.8 -5.30155 | opp_overlap 48512 ATCTTTCAATGTAAT TGCG CGG CGCA TTTTTTCCTTAATGA CPn0035 51029 - 49566 - | hypothetical protein TERM 60 51349 - 51372 + GH 82 -6 -5.02074 | overlap 51344 51353 TGGTCGTTGTGGGTT TCAAGGAGAG CCTC CTCTTCTAGA TTTTTTAGGGCATCA CPn0036 51002 - 51799 + | hypothetical protein ptsH 51792 - 52118 + | PTS phosphocarrier protein Hpr ptsI 52119 - 53834 + | PTS PEP phosphotransferase ybaB 54250 - 53960 - | hypothetical protein dnaX_1 55643 - 54315 - | DNA polymerase III subunits gamma and tau TERM 61 55418 - 55405 - G 71 -2.3 -5.18726 | TCTTTACAAGAAAAA CACTG GTTG CAGGG CTCGCCATCCTCGCT TERM 62 55680 - 55693 + H 74 -2.4 -5.4505 | ATAGAAAGCTCATTT TCTC ATTTAA GAGA TTTTTTCTTGAAGAC TERM 63 55749 - 55806 + H 89 -11.7 -3.41073 | opp_overlap 55752 55755 55771, overlap 55748 55752 55761 55771 CTTTTCGCAGAGATG GAATGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGAATC TCTTTGAATAAAATA TERM 64 55752 - 55803 + H 84 -12 -2.56124 | opp_overlap 55752 55755 55771, overlap 55748 55749 55761 55771 TTCGCAGAGATGGAA TGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGA ATCTCTTTGAATAAA TERM 65 55803 - 55752 - H 95 -14.2 -3.15999 | opp_overlap 55748 55752 55749 55761 55771, overlap 55755 55771 TTCGCAGAGATGGAA TGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGA ATCTCTTTGAATAAA TERM 66 55800 - 55755 - H 100 -15.9 -2.78154 | opp_overlap 55748 55752 55749 55761 55771, overlap 55752 55771 GCAGAGATGGAATGA TTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAA TGAATCTCTTTGAAT CPn0041 55996 - 57345 + | hypothetical protein CPn0042 57403 - 58185 + | hypothetical protein TERM 67 59238 - 59226 - g 77 -4.8 -5.06414 | overlap 59211 GGCTTTTAACAAAAA TGCC TATGG GGCA GCAAAAAATGCCTTT TERM 68 59262 - 59247 - g 75 -3.2 -5.14563 | opp_overlap 59248, overlap 59248 59260 TGGGGCAGCAAAAAA TGCCTT TGAT AAGGCT TTTGGAAGCTTGGAA TERM 69 59248 - 59261 + G 71 -6.7 -4.11484 | opp_overlap 59247 59248 59260 GGGGCAGCAAAAAAT GCCTT TGAT AAGGC TTTTGGAAGCTTGGA CPn0043 58447 - 60375 + | hypothetical protein CPn0044 60419 - 60781 + | hypothetical protein TERM 70 60839 - 60865 + F 77 -8.9 -3.5332 | gap 1, overlap 60835 GAAGATCGTTCCTAG CACAACTC-TAG AAAC CTATGAGTTGTG TTGCTTTAAAAATTT TERM 71 61737 - 61722 - g 71 -3.2 -5.03314 | opp_overlap 61713 61723, overlap 61723 TGGAGTGGCAAAAAA TGCCTT TGAT AAGGCT TTTGGGGCATTAGAA TERM 72 61723 - 61736 + G 71 -6.7 -4.11484 | opp_overlap 61723 61722, overlap 61713 GGAGTGGCAAAAAAT GCCTT TGAT AAGGC TTTTGGGGCATTAGA CPn0045 61069 - 62793 + | hypothetical protein CPn0046 62790 - 63266 + | hypothetical protein CPn0047 63455 - 63655 + | hypothetical protein TERM 73 63633 - 63662 + F 89 -8.7 -4.46155 | opp_overlap 63631 63633 AGGTAAAACTACAGA CTTCCTCTCATAA ATGG TTGTGAGACGAAG TTTTCTAAGTGTGTG TERM 74 65212 - 65163 - g 71 -8.6 -3.42574 | gap 1, opp_overlap 65163 65184 GGAAGCTTAGCAGAA GCTGCAGCTCAAGCTATAGGTGC AGATA GCCTCTATTGCTTG-GTTGCAGC TCATTACCATGATAT TERM 75 65163 - 65212 + G 91 -13 -2.7419 | gap 1, opp_overlap 65163, overlap 65184 GGAAGCTTAGCAGAA GCTGCAGCTCAAGCTATAGGTGC AGATA GCCTCTATTGCTTG-GTTGCAGC TCATTACCATGATAT yqfF 63687 - 65804 + | inner membrane protein CPn0049 66296 - 65814 - | hypothetical protein TERM 76 65902 - 65891 - G 90 -4.4 -5.59879 | overlap 65900 TAGAAAGAGAAAAAA GCAT TAGA ATGC CAAGAAGCAGTAGCG CPn0050 66813 - 66496 - | hypothetical protein CPn0051 66833 - 67114 + | hypothetical protein hemC 68005 - 67301 - | porphobilinogen deaminase sms 69344 - 67983 - | DNA repair protein RadA TERM 77 68376 - 68358 - GR 90 -7.4 -5.08483 | overlap 68360 TAAAAGTAAAGAAAA GCGATTCG GAT CGAATCCC GCAGTCTTCCTTACT rnc 70023 - 69310 - | ribonuclease III CPn0055 70129 - 70593 + | hypothetical protein TERM 78 71318 - 71340 + G 77 -4.8 -5.011 | opp_overlap 71308 71317, overlap 71320 AGAAACTGCAAAAGT CCTCGCAG GTAATGG CTGCGAAG TTTTCTTGTTTCAGT TERM 79 72244 - 72228 - g 72 -6.5 -4.28188 | CACGTAGAAGATAAA GACGCTA TTA TTGCGTC AGCATTGATTGCAGA mrsA 70953 - 72749 + | phosphomannomutase TERM 80 72833 - 72817 - f 75 -8 -3.78934 | opp_overlap 72816 72817 TCTCCTTCAGAATAA GGCCTT CTTTC AAGGCC ATTGTTGTATCCGAA sodM 72934 - 73557 + | superoxide dismutase (Mn) TERM 81 74138 - 74151 + G 71 -3.1 -4.93877 | CTGGAGGCGCACGTA TGCAG GAAT CTGTA TTTTCTTTAATGCAG accD 73639 - 74565 + | acetyl-CoA carboxylase subunit beta TERM 82 74639 - 74660 + G 70 -9.5 -2.78384 | ATTTTGTGAATTGGA TTCAGGAGG AGAA CTTCCTGAA TATACTACGCCAGGA TERM 83 74766 - 74736 - g 76 -9.9 -3.28712 | gap 1, overlap 74737 CTGCTGCCTGGACAA CGTGCTTTGATCCC TACC GGAATCAAAGCA-G AAATTCCCGAAGGGT TERM 84 74766 - 74737 - g 71 -10.1 -2.57132 | overlap 74736 TGCTGCCTGGACAAC GTGCTTTGATCCC TACC GGAATCAAAGCAG AAATTCCCGAAGGGT dut 74616 - 75053 + | deoxyuridine 5'-triphosphate nucleotidohydrolase ptsN_1 75055 - 75531 + | PTS IIA protein ptsN_2 75534 - 76211 + | PTS IIA protein + HTH DNA-binding domain TERM 85 77157 - 77147 - g 73 -5.4 -4.73092 | ACAATGTAAAAGAAA GTCT GTA AGAC AAGCTCTTGAAGCTC CPn0062 76308 - 77693 + | hypothetical protein TERM 86 78220 - 78241 + G 72 -7.3 -3.95787 | overlap 78228 TATAGTTTTACTTTG GGAATCTTC TTAG GAAGATGCC TTTCTACGTCTAATA CPn0063 78112 - 78270 + | hypothetical protein CPn0064 78346 - 78579 + | hypothetical protein TERM 87 78829 - 78843 + F 70 -2.2 -5.27938 | overlap 78831 TATTTTCTAAGAGTT TTTTAA TTA TTAAGA TTTTTATTTAAAAAT CPn0065 78924 - 80654 + | hypothetical protein TERM 88 82077 - 82087 + G 76 -6.8 -4.55826 | opp_overlap 82068, overlap 82075 ACAAATCGTCCAGGC TGCC GGC GGCA TTTTCGTGTTTTAAG CPn0066 80925 - 82658 + | hypothetical protein TERM 89 82836 - 82865 + F 72 -8.1 -3.41738 | opp_overlap 82838, overlap 82834 82838 82843 82864 TCTCGTTGACATTAA AACCAAATAAAAA CATG TTTTTATTTGGTC TATTCTGTTAAAATA TERM 90 82838 - 82863 + F 86 -10.7 -3.27382 | opp_overlap 82838, overlap 82836 82834 82843 TCGTTGACATTAAAA CCAAATAAAAA CATG TTTTTATTTGG TCTATTCTGTTAAAA TERM 91 82863 - 82838 - f 100 -10.7 -4.34402 | opp_overlap 82838 82836 82834 82843 TCGTTGACATTAAAA CCAAATAAAAA CATG TTTTTATTTGG TCTATTCTGTTAAAA TERM 92 83346 - 83307 - g 71 -2.1 -5.10154 | overlap 83312 ATGGAAAAGGAAAAA GAAGATCCGGAGCATTT TGGAAG AACCGCTACGGATATCC CAATGAGATCTGCAT CPn0067 82953 - 84056 + | hypothetical protein TERM 93 84217 - 84196 - T 84 -6.7 -5.12068 | opp_overlap 84195 TATACCGAATAAAAA TATCTAGAA GAGG CTCTAGATA CATCTTTGGAAATAG TERM 94 84319 - 84288 - T 100 -10.4 -4.40237 | opp_overlap 84286 84284 84288 84293, overlap 84293 GAGGAGAGATCAAAA GAAAATGTTCCA AGATGTTA TGGAACATTTTC TCTCTAGTTTATTTT TERM 95 84288 - 84319 + T 80 -10.4 -3.13164 | opp_overlap 84288 84293, overlap 84286 84284 84293 GAGGAGAGATCAAAA GAAAATGTTCCA AGATGTTA TGGAACATTTTC TCTCTAGTTTATTTT TERM 96 84314 - 84293 - T 76 -4.5 -5.16132 | opp_overlap 84288 84286 84284 84293, overlap 84288 GAGATCAAAAGAAAA TGTTCCA AGATGTTA TGGAACA TTTTCTCTCTAGTTT TERM 97 84293 - 84314 + T 70 -4.5 -4.65494 | opp_overlap 84293 84288, overlap 84288 84286 84284 GAGATCAAAAGAAAA TGTTCCA AGATGTTA TGGAACA TTTTCTCTCTAGTTT CPn0068 84903 - 84328 - | hypothetical protein CPn0069 85236 - 87089 + | hypothetical protein CPn0070 87378 - 87205 - | hypothetical protein TERM 98 87275 - 87255 - G 71 -4.7 -4.64464 | overlap 87249 TAAATGAAATCAAAA GGGTTCCTT GTG AAGAAAACC CTACAGATTGCAACC CPn0071 88045 - 87596 - | hypothetical protein CPn0072 89061 - 88054 - | hypothetical protein infA 89356 - 89577 + | translation initiation factor IF-1 tuf 89774 - 90958 + | elongation factor Tu TERM 99 90997 - 90962 - f 82 -7.6 -4.62872 | opp_overlap 90968, overlap 90963 ATCAATGCTTAAAAA TGAATTTCGCGATGAT TTTC ATCATCGCGATTTTCT GGGTGTGTAGCTTAG TERM 100 90996 - 90963 - f 87 -11.1 -3.37 | opp_overlap 90968, overlap 90962 TCAATGCTTAAAAAT GAATTTCGCGATGAT TTTC ATCATCGCGATTTTC TGGGTGTGTAGCTTA TERM 101 90968 - 90991 + F 100 -14 -4.46155 | opp_overlap 90963 90962 GCTTAAAAATGAATT TCGCGATGAT TTTC ATCATCGCGA TTTTCTGGGTGTGTA secE 91102 - 91353 + | preprotein translocase subunit SecE nusG 91358 - 91906 + | transcription antitermination protein NusG rplK 92013 - 92438 + | 50S ribosomal protein L11 rplA 92465 - 93163 + | 50S ribosomal protein L1 TERM 102 93314 - 93372 + G 93 -12 -3.58269 | opp_overlap 93290 93299 93337 93346, overlap 93304 93315 93337 TCACTTTCTGGAGTT TCTGCAGAATTTGAAGTTTTAAAGAAGA GAA TCTTCTTTAAAGCTATAGAAGCTGCAGG TTTAGAGGTAGATTG TERM 103 93315 - 93371 + G 93 -13.3 -2.7464 | opp_overlap 93290 93299 93337 93346, overlap 93304 93314 93337 CACTTTCTGGAGTTT CTGCAGAATTTGAAGTTTTAAAGAAGA GAA TCTTCTTTAAAGCTATAGAAGCTGCAG GTTTAGAGGTAGATT rplJ 93179 - 93691 + | 50S ribosomal protein L10 rplL 93735 - 94124 + | 50S ribosomal protein L7/L12 TERM 104 94131 - 94160 + F 100 -13.9 -5.52079 | opp_overlap 94136 GGACTGTAATTTGTA GAAAAGAAAAATC GAAA GATTTTTCTTTTC TTTTTCTTTTCATGT TERM 105 94155 - 94136 - f 83 -8 -4.4017 | opp_overlap 94131 GTAATTTGTAGAAAA GAAAAATC GAAA GATTTTTC TTTTCTTTTTCTTTT TERM 106 94210 - 94184 - f 76 -3.6 -5.28176 | overlap 94185 TTCATGTATAAAAAA CCGAATGCTCCC TTT AGAAGCATACGT AGGCTTAATTTAGGG TERM 107 94209 - 94185 - f 70 -7.1 -3.76182 | overlap 94184 TCATGTATAAAAAAC CGAATGCTCCC TTT AGAAGCATACG TAGGCTTAATTTAGG TERM 108 94319 - 94299 - g 95 -4.7 -5.76949 | CAGTGTTAAAAAAAA GGAAGATAT CCC AGACCTTCC AAATCTTATCGAAAT rpoB 94261 - 98019 + | DNA-directed RNA polymerase subunit beta TERM 109 98248 - 98230 - g 77 -4.6 -5.0133 | TATTTTGTGAAAAAA TCTTTGGT CCT ACTAAAGA TTGGGAATGTTGCTG TERM 110 98693 - 98679 - g 71 -2.1 -5.10933 | TTACGCAAAACAAAA TCTCA GCAAG CGAGA ATGAAGTTAGCCAAA TERM 111 99071 - 99056 - g 75 -3.2 -5.22039 | opp_overlap 99067, overlap 99058 GTTAAAGGGAAAAAA TGGACG CTTC CGTCAA AATCTTTTAGGAAAA rpoC 98043 - 102224 + | DNA-directed RNA polymerase subunit beta' TERM 112 102239 - 102282 + F 93 -4.9 -6.09888 | gap 2, opp_overlap 102249 102267, overlap 102239 102240 ACTAGGTGACACAGT C-TT-TTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGAATG TTTTTTTTGTTAACG TERM 113 102239 - 102280 + F 93 -8.9 -4.69435 | opp_overlap 102249 102267, overlap 102239 102240 ACTAGGTGACACAGT CTTTTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGAA TGTTTTTTTTGTTAA TERM 114 102240 - 102279 + F 93 -12.4 -3.39221 | opp_overlap 102249 102267, overlap 102239 102239 CTAGGTGACACAGTC TTTTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGA ATGTTTTTTTTGTTA TERM 115 102270 - 102249 - f 74 -9.5 -3.14683 | opp_overlap 102240 102239 102239, overlap 102267 ACAGTCTTTTATCAA GGAGGTTAT GTTT ACAACCTCC TTGATAGGAATGTTT tal 102332 - 103315 + | transaldolase B CPn0084 103362 - 103754 + | ferredoxin TERM 116 103785 - 103795 + T 71 -5.4 -4.59853 | TTTTCGTTTTGCAGA GCTT CCA AAGC TTTTTCAAGGATTGC CPn0085 104506 - 103763 - | hypothetical protein TERM 117 104511 - 104501 - G 93 -4 -5.80727 | opp_overlap 104501 AAAAAGAATAAAAAA TTTC ATA GAAA ATTATGTAGTTAGTT TERM 118 104617 - 104600 - H 70 -4.1 -4.82901 | opp_overlap 104600 104602, overlap 104602 TCGTTTTCAGAAAAA TATTCCC AATA GGGAATC TTTGGATCTAGAAGA TERM 119 104887 - 104872 - H 75 -4.8 -4.86731 | overlap 104867 CTTTTTTAAAGAAAA TTCTTT TCTA AAAGAA TAAGCGGTAAAATAT TERM 120 105444 - 105434 - g 73 -5.4 -4.70613 | AAAAGTTGAAGAAAA GAAC TGG GTTC TGGATCTTAGTTCCT atpE 104904 - 105530 + | V-type ATP synthase subunit E CPn0087 105579 - 106379 + | hypothetical protein atpA 106373 - 108148 + | V-type ATP synthase subunit A atpB 108153 - 109469 + | V-type ATP synthase subunit B atpD 109454 - 110083 + | V-type ATP synthase subunit D TERM 121 110390 - 110403 + G 70 -3.7 -4.89477 | opp_overlap 110391, overlap 110391 AGATTGTTAGAGTCA AGCCC CTAG GGGCA TTTTCTTCTTCAGAG atpI 110074 - 112056 + | V-type ATP synthase subunit I TERM 122 112522 - 112533 + G 71 -3 -5.04356 | TTATGCAGCGATTGG GATT GTCG AATC TTTTTCATTGTTTGC atpK 112151 - 112576 + | V-type ATP synthase subunit K TERM 123 112858 - 112842 - gf 89 -9.5 -4.09108 | GGCAAGGTAGAGAAA TTGACCT ATG AGGTCAA TCAAAGTGCGGGGTA CPn0093 112509 - 113018 + | hypothetical protein TERM 124 113866 - 113825 - g 100 -16.8 -3.69332 | opp_overlap 113838 CAACAAGACCCGAAA CTTCATTAGGAGACACTG GGATCG CAGTGTCTCCTAACGACG AGCGCTATGCATCAT TERM 125 115084 - 115100 + G 75 -2.3 -5.28983 | GGTATTGATGAAGAC TCTTTAG GGC TTGAAGA TTTTTATATTTTAGA valS 113152 - 115974 + | valyl-tRNA synthetase TERM 126 116136 - 116120 - g 70 -5.9 -4.38154 | opp_overlap 116120 116121 AGATCTTGCAGAAAA TCCTCTT TTG AAAAGGA GGTTTTTACGAGAGG TERM 127 116121 - 116138 + G 74 -6.3 -4.56597 | opp_overlap 116120, overlap 116120 GATCTTGCAGAAAAT CCTCTTT TGAA AAGGAGG TTTTTACGAGAGGCA pknD 115995 - 118793 + | serine/threonine-protein kinase uvrA 124314 - 118834 - | excinuclease ABC subunit A TERM 128 119955 - 119920 - G 86 -9.8 -3.99806 | gap 1, overlap 119921 119953 AGAATCCATGAGAAA TCCTCCTTGAGGTCCAG ATC CTGGACC-CAAGAAGAT CGCGTGATCGGCATG TERM 129 119954 - 119921 - G 100 -13.3 -2.99161 | gap 1, overlap 119920 119953 GAATCCATGAGAAAT CCTCCTTGAGGTCCAG ATC CTGGACC-CAAGAAGA TCGCGTGATCGGCAT TERM 130 121852 - 121863 + g 70 -5.8 -4.24404 | opp_overlap 121851 121852 AGAAGCAAAGAGAAG CTCG TGAG CGAG TTTTAGCCTTTGAAT TERM 131 123494 - 123484 - G 70 -5.4 -4.46514 | ATCTATGGAAATAAA GATC CCG GATC CTTGACAAAGAGAGC TERM 132 123519 - 123504 - G 78 -9 -3.86897 | CGGATCCTTGACAAA GAGAGC AACG GCTCTC CAGGGCATGAGGAGA TERM 133 124885 - 124896 + G 70 -5.8 -4.2461 | overlap 124876 124880 TCTCTCTATCCTAAG GGGA TATT TCCC TTTGTTCCTGAGGGT pyk 124555 - 126009 + | pyruvate kinase htrB 127491 - 126088 - | lipid A biosynthesis lauroyl acyltransferase TERM 134 126118 - 126130 + g 91 -6.3 -5.51046 | TCGGGGCCCCTTCGA CTTCA CCT TGAAG TTTTTTCTCTCTTTA TERM 135 126741 - 126752 + g 70 -5.8 -4.40804 | opp_overlap 126741 CATTAACAGCAATCA CAGG AAAA CCTG TTTTATAAGCTAATA CPn0099 127593 - 127868 + | hypothetical protein CPn0100 129141 - 127879 - | hypothetical protein TERM 136 128092 - 128114 + g 71 -2 -5.21709 | TTGGGCTATAATAGT CTGAAGAAAA GTA TTTTCTAAAG TTTTTTCATCTAAAA TERM 137 128377 - 128390 + g 79 -6.7 -4.59773 | opp_overlap 128376 TAAATTTAAATTTAG GGGAA TGCA TTCCC TTTTTAAAAATAAAA ybbP 129932 - 129138 - | hypothetical protein TERM 138 129201 - 129212 + g 70 -7.2 -3.75937 | opp_overlap 129197 129200 AGGGGAAAGAATACT GCGG AGTA CCGC TTTGAATCTATCTAT TERM 139 130398 - 130420 + G 75 -2.1 -5.27769 | gap 1 AGGAAATATTTTCGG CACCTT-ATT AGGT AGTGAAGGTG TTTTTGCTTTTTTCT cydA 130123 - 131469 + | cytochrome oxidase subunit I cydB 131480 - 132514 + | cytochrome oxidase subunit II TERM 140 132657 - 132633 - T 75 -8.5 -3.45405 | opp_overlap 132627 132633, overlap 132631 132627 TCTAGAAAATGAAGA GCTTCCATTGG AAT CCTTTGGAAGC TATCATTATACTTCG TERM 141 132633 - 132657 + T 71 -8.5 -2.9953 | opp_overlap 132633 132631 132627, overlap 132627 TCTAGAAAATGAAGA GCTTCCATTGG AAT CCTTTGGAAGC TATCATTATACTTCG CPn0104 133875 - 132673 - | hypothetical protein TERM 142 133389 - 133405 + g 95 -8.1 -5.02074 | opp_overlap 133401 ACAGCTCGATGGGTC CTTTGTT AGC AACAAAG TTTTTTGCAACATAG CPn0105 134847 - 134026 - | hypothetical protein phoH 135091 - 136377 + | ATPase CPn0107 137162 - 136389 - | hypothetical protein TERM 143 137052 - 137070 + g 89 -3.8 -5.67967 | TGATTGATTTAGTGC CCAGGCAA AGA TTTTCTGG TTTTTTTCTGCTGGT CPn0108 137857 - 137300 - | hypothetical protein TERM 144 139177 - 139193 + G 70 -5.1 -4.57341 | opp_overlap 139177 GGATTAGTGTACGAA GGTACAA AAG TTGTCCC TTTTTCAACAGCATT TERM 145 140273 - 140241 - g 73 -7.1 -4.11216 | overlap 140244 GCCTTATGCCCAAAA TCATTATCCTTTTGA AAA TCAAAAGGAAACCGA AGAGGCATTTCCTGC ileS 138655 - 141786 + | isoleucyl-tRNA synthetase TERM 146 141812 - 141836 + T 75 -5.1 -5.00846 | opp_overlap 141812, overlap 141809 141806 GAAACAACTGAAAAA CCATAAGAA TGGTTAT TTCTTGTGG TTTTTCTCCTCTTTC TERM 147 141823 - 141812 - T 73 -4.4 -4.8384 | opp_overlap 141809 141806 141812 GAAACAACTGAAAAA CCAT AAGA ATGG TTATTTCTTGTGGTT lepB 143734 - 141824 - | Signal peptidase I CPn0111 144686 - 143931 - | hypothetical protein TERM 148 144349 - 144336 - G 71 -2.4 -5.19879 | GTTTAAAGAGAAAAA CTGA GAACCT TCAG AAGAGAGCGAAACAA rpmE2 144767 - 145096 + | 50S ribosomal protein L31 type B TERM 149 145126 - 145157 + F 100 -17.4 -5.60993 | opp_overlap 145126 TTCCCATTTATAAAA CCCATTCTCAGGCT CTCA AGCCCGAGAATGGG TTTTTTTGTGAGGGC TERM 150 145157 - 145126 - f 100 -19.6 -4.42386 | opp_overlap 145126 TTCCCATTTATAAAA CCCATTCTCAGGCT CTCA AGCCCGAGAATGGG TTTTTTTGTGAGGGC TERM 151 145404 - 145390 - g 80 -3.6 -5.29846 | opp_overlap 145390 145401, overlap 145378 145384 AAGTCGAAATAAAAA TTTCAA ATC CTGAAA TTTTTTCTAATTCTA TERM 152 145390 - 145404 + G 76 -2.9 -5.39755 | opp_overlap 145378 145384 145390, overlap 145401 AAGTCGAAATAAAAA TTTCA AATCC TGAAA TTTTTTCTAATTCTA TERM 153 146076 - 146091 + G 73 -9 -3.52652 | opp_overlap 146076 146071 146078, overlap 146083 GCGGTGAGAATCACA CACCTG CCTA CAGGTG TTGTAGTTACATGCC TERM 154 146204 - 146190 - g 71 -4.2 -4.84529 | opp_overlap 146190 GCAGAAATGCAAAAA CGCC ATAACGA GGCG TCTGCTATGCGTTCT prfA 145335 - 146408 + | peptide chain release factor 1 TERM 155 147007 - 147022 + G 75 -9 -3.66028 | overlap 147020 GAAGTGCGTTGTTAC GAGCCT TGGA AGGCTC TTGTTGGAGGTTCTA hemK 146398 - 147264 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase ffh 147279 - 148625 + | Signal recognition particle GTPase rpsP 148616 - 148975 + | 30S ribosomal protein S16 TERM 156 149850 - 149826 - g 70 -5.8 -4.30987 | AGCTGCGAGAATAAA TTTTGTCTTC CTCAT GAAGGCAAAA CCATATTCTGGTTAC trmD 148989 - 150074 + | fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein rplS 150102 - 150467 + | 50S ribosomal protein L19 rnhB 150523 - 151167 + | ribonuclease HII gmk 151164 - 151781 + | guanylate kinase CPn0121 151778 - 152071 + | hypothetical protein TERM 157 152746 - 152765 + G 76 -7.9 -4.19177 | ATAGAACATGTCAGG TCTCGAG CCATTA CTCGAGA TTTATCTTGGGGGAT metG 152071 - 153726 + | methionyl-tRNA synthetase recD_1 155969 - 153771 - | exodeoxyribonuclease V (Alpha subunit) TERM 158 155143 - 155182 + g 84 -11 -3.72989 | opp_overlap 155152 AGTGTCCCAGAAATG TCTTGAATATGTAAAAGC TTAC GCTTTTGCATATTGAGGA TTTGCGTATCGATTT TERM 159 155329 - 155313 - G 88 -12.3 -2.71263 | AAGTTCTTCTAAGGA GTGCTGG ATA CCAGCAC ATAGGCGACTTTCAG TERM 160 156993 - 157009 + G 75 -2.3 -5.28778 | GAGATATTAGAAATG CTCTT GATAACG AAGAG TTTTTTATGACTCAT CPn0124 156614 - 158071 + | hypothetical protein CPn0125 158096 - 158608 + | hypothetical protein TERM 161 158816 - 158835 + G 70 -2.8 -5.05442 | overlap 158812 ATTAGTTATTGGTAT TCTCATAC TATT GCATGGGA TTATTTTTTTTCTCT TERM 162 159938 - 159918 - g 100 -14.1 -3.06087 | opp_overlap 159918 159919, overlap 159928 AATAGATTTGCAAGA CGCTCAAAG AGC CTTTGAGCG TCAAAGTCAGGAGTT TERM 163 160011 - 159991 - g 71 -9.8 -2.66034 | opp_overlap 159994, overlap 159994 ACAAAGGTGAGACTA GAAGCACT TCAAC AGTGCTTC TCGGATCTTAGGGAG TERM 164 160140 - 160129 - g 78 -5.8 -4.8048 | opp_overlap 160129, overlap 160137 GTGCGATATCAAAAA GAGC AAAG GCTC TATTGGGAAACAATA CPn0126 158809 - 161088 + | hypothetical protein ytfF 162143 - 161127 - | cationic amino acid transporter TERM 165 161991 - 161978 - G 70 -5.3 -4.44915 | CAATCAGGGAGAAAA TACCA AAAA TGGTA TAACGGGTAAGTACA CPn0128 162277 - 163056 + | biotin protein ligase CPn0129 163717 - 163061 - | hypothetical protein CPn0130 164245 - 163748 - | hypothetical protein TERM 166 163800 - 163812 + g 87 -4.9 -5.57054 | opp_overlap 163811, overlap 163809 163811 ATTAGGAAATCTGGA TCTTT AAG AAAGA TTTTTTTCCATTCTT TERM 167 163843 - 163814 - G 70 -9.5 -2.80512 | opp_overlap 163811 163809, overlap 163813 163811 ATCTTTAAGAAAGAT TTTTTTCCATTCT TCGA AGGATGGAAAAAA GAGCTCATTTTTTAG TERM 168 164469 - 164459 - H 70 -4 -5.00616 | opp_overlap 164459 TCGTCTCTGAAAAAA GAAA GAT TTTC TTTAAGTCTTGCAAT TERM 169 165111 - 165121 + G 73 -5.4 -4.69027 | overlap 165101 GGATAGAGAGAGTCT CACT TTT AGTG TTTTTGAGTGCATTT CPn0131 164549 - 165583 + | hypothetical protein TERM 170 166078 - 166089 + G 78 -2.2 -5.52347 | GGAAGCGGATCGTTT GTCT CGAG AGGC TTTTTTGATTTTATT CPn0132 165587 - 166564 + | hypothetical protein CPn0133 167334 - 166561 - | hypothetical protein TERM 171 167431 - 167402 - R 100 -13.8 -5.27938 | ATTCCCAAAGAAAAA GGTCTCTTTTCT TTAGTT AGAAAAGAGACC TCATGGAAAATTGTT groEL 169098 - 167464 - | chaperonin GroEL TERM 172 168843 - 168857 + g 70 -5.7 -4.25848 | overlap 168847 168848 TTGTAGTTCCGTCGC CTGCT TTGTC AGCAG TTTTGCTGGCGACTT groES 169448 - 169140 - | co-chaperonin GroES TERM 173 169563 - 169533 - R 89 -10.7 -3.61398 | overlap 169549 TTTTTTGTGCAATAA TTTTAGCACTCAA TAATT TTAAGTGCTAAAA ACTCAATCTTCTGAA pepF 171401 - 169566 - | oligopeptidase TERM 174 169740 - 169753 + g 73 -3.9 -5.00616 | overlap 169730 TTCGAGAGCCCCTGG TTCTT GTGT AAGAA TTTTTTCAGCAAAGG TERM 175 169919 - 169943 + g 88 -10.8 -3.84406 | opp_overlap 169923 CGTAAGTTGCGGAGA GGAACTCTTC AGTAA GAGGAGTTCC TTGTTCTGCTGCAGA TERM 176 171168 - 171179 + g 82 -3 -5.52384 | TTGGTCTAATTTTCG TTCT ACAG AGAA TTTTTTTGATAAAAG TERM 177 171491 - 171473 - R 71 -3.1 -5.08088 | opp_overlap 171474, overlap 171474 AATCTTTAAGAAAAA GCCAAGA ACAAA TCTTGGT TTAAAGATTAGAAGG ybgI 172254 - 171499 - | Acr family transporter TERM 178 172728 - 172706 - R 77 -5.6 -4.93898 | opp_overlap 172706 AGACTATTAGAAAAA TCTTTGAGCC GAA GAGTCAAAGA TTTTAATCAGGCTAT hemL 174019 - 172697 - | glutamate-1-semialdehyde aminotransferase yqgE 174656 - 174090 - | hypothetical protein yqdE 175110 - 174670 - | hypothetical protein rpiA 175802 - 175107 - | ribose-5-phosphate isomerase A CPn0142 176091 - 175813 - | hypothetical protein TERM 179 176051 - 176033 - G 71 -3.2 -5.08088 | opp_overlap 176037, overlap 176034 176037 AAGTGCGAACAAAAA TTAAGAAT GGA ATTCTTAG TAGACAATAGTTGGA TERM 180 176165 - 176205 + r 85 -9 -4.14764 | opp_overlap 176168, overlap 176168 TAACGTACATAAAGG GAAGAGCTGGTTGGATCT ATAGA GGTTCCAACCAGCTCTGG TTTCATTATTTCCAA TERM 181 176168 - 176202 + r 100 -15.1 -3.08658 | opp_overlap 176168, overlap 176165 CGTACATAAAGGGAA GAGCTGGTTGGATCT ATAGA GGTTCCAACCAGCTC TGGTTTCATTATTTC TERM 182 176202 - 176168 - R 100 -14.4 -3.35695 | opp_overlap 176168 176165 CGTACATAAAGGGAA GAGCTGGTTGGATC TATAGAG GTTCCAACCAGCTC TGGTTTCATTATTTC yxjG_1 177335 - 176211 - | hypothetical protein TERM 183 176318 - 176308 - G 76 -6.8 -4.4773 | TCACATGAAGCAAAA CCAC ACT GTGG ACTTAGAGAGAGTCT TERM 184 177231 - 177244 + g 74 -6.7 -4.24562 | opp_overlap 177231 177229 ATCTAGAGAAATAGA GCCTT CTTT AAGGC TTTCTCTAGTTTTTT TERM 185 177632 - 177652 + H 86 -4.9 -5.59879 | opp_overlap 177635 TGATAATTTCTCAGG TAATTAAAA ATC TTTTAATTG TTTTTTCTGTTTATG TERM 186 177945 - 177933 - H 72 -2.7 -5.30348 | opp_overlap 177934, overlap 177934 ATGTAATAAGAAAAA CCTTT TTA AAAAG TGCTTGGGGTGAATT TERM 187 178973 - 179000 + G 73 -5.6 -4.48713 | gap 1 TCAGCCTATTTTTGT GACAG-AGCCTTC TTT GGAGGATGCTGTC TTTATTCTTCGTGGA clpB 177963 - 180563 + | Clp protease ATPase TERM 188 180887 - 180877 - g 78 -4 -5.14645 | ATAATGTAACAAAAA CTTA TGA TAAG AAAGCTTCTGTTATA CPn0145 180777 - 182372 + | hypothetical protein CPn0146 182613 - 183098 + | hypothetical protein CPn0147 183225 - 183674 + | hypothetical protein TERM 189 183736 - 183766 + F 83 -6.9 -4.68209 | opp_overlap 183739 183742, overlap 183739 CCTTCCGTTGTTTTA AAAGAACCTCAAG AATAA CTAGAGGTTCTTG TTTGTTTATTGCAAT TERM 190 183739 - 183763 + F 89 -8.6 -4.43668 | opp_overlap 183739 183742, overlap 183736 TCCGTTGTTTTAAAA GAACCTCAAG AATAA CTAGAGGTTC TTGTTTGTTTATTGC TERM 191 183763 - 183739 - f 82 -8.6 -4.07568 | opp_overlap 183739 183736, overlap 183742 TCCGTTGTTTTAAAA GAACCTCAAG AATAA CTAGAGGTTC TTGTTTGTTTATTGC CPn0148 183846 - 185705 + | S/T protein kinase TERM 192 185914 - 185926 + G 71 -3.3 -5.06585 | CACGTCTCGGAGATC GTCCC TCT GGAAC TTTTTCTGTGGTTTC TERM 193 187169 - 187153 - g 72 -8 -3.78067 | AAGATTTAATGCAAA TTCCCG GGATA CGGGAA CGCTCTGCAAGAAAT ligA 185715 - 187703 + | NAD-dependent DNA ligase LigA TERM 194 189451 - 189435 - g 84 -2.9 -5.63504 | AATCCTACAAAAAAA CGAAGAC GAA GTCCTTG CATTGAAGAGTACAA TERM 195 191917 - 191960 + G 83 -11.2 -3.53343 | opp_overlap 191917, overlap 191925 AAGTATATGCAGATA CTTTTAGATGCACCAGTCAG TCTA TTGTATGGTGCATTTAAAAG TTTCAAAAACGAATT CPn0150 187834 - 192447 + | hypothetical protein TERM 196 192545 - 192516 - T 72 -5.8 -4.43309 | gap 1, opp_overlap 192516 CAACTGCAATGAAAA CCATAGAG-GACT AGGAA AGGCTCTCTATGG TTTTTTTTCACAATT TERM 197 192516 - 192545 + T 93 -5.8 -5.77853 | gap 1, opp_overlap 192516 CAACTGCAATGAAAA CCATAGAG-GACT AGGAA AGGCTCTCTATGG TTTTTTTTCACAATT mhpA 194142 - 192622 - | monooxygenase TERM 198 194202 - 194192 - R 71 -5.4 -4.52047 | overlap 194184 194182 CATTATAGGATAAAA TCCT AGG AGGA ATCAAGAAACGAATT TERM 199 194310 - 194282 - R 83 -10.4 -3.29511 | opp_overlap 194280 TGTAGTGTTCTAGAA CCGTTGTACCTT GAATT AAGGTACAACTG AAATTTAAAGTGTTC CPn0152 195265 - 194315 - | hypothetical protein TERM 200 195358 - 195368 + H 82 -5.4 -5.21709 | opp_overlap 195358 TGAAGGAAAAACGGA CAAG ACT CTTG TTTTTTCCTCTGGGG TERM 201 196996 - 197026 + G 84 -9.8 -3.75863 | overlap 196999 GTAGATCTTTACATT GGAGGTGCAGAACA CGC TGTTCTTCATCTTC TTTACTCGAGATTTT TERM 202 196999 - 197023 + G 74 -7.9 -4.0031 | overlap 196996 GATCTTTACATTGGA GGTGCAGAACA CGC TGTTCTTCATC TTCTTTACTCGAGAT leuS 195433 - 197895 + | leucyl-tRNA synthetase TERM 203 197899 - 197916 + G 74 -4.9 -4.7889 | gap 1 TTTGTCCTATGATGC TACGA-GG TGT CCATCGTA TTTTTAAGTGTTTCT TERM 204 198449 - 198461 + G 71 -3.4 -5.06414 | TAAAAACTATTTCTC TCCA GTAGA TGGA TTTTTATTACAGGAC gseA 197892 - 199205 + | 3-deoxy-D-manno-octulosonic-acid transferase CPn0155 199691 - 199485 - | hypothetical protein CPn0156 200117 - 199767 - | hypothetical protein TERM 205 200165 - 200181 + r 72 -8.1 -3.49789 | AAAATATTTGTTGCC TTCTTCT TTC AGAAGAA TATCTTTTATCAGTT CPn0157 200723 - 200295 - | hypothetical protein CPn0158 201430 - 200891 - | hypothetical protein TERM 206 201130 - 201142 + g 84 -5.5 -5.40004 | AAAAATAAATGAAGG CCCAT ACA GTGGG TTTTTTAGTTTCATG CPn0159 201772 - 201464 - | hypothetical protein pfkA_1 203791 - 202124 - | diphosphate--fructose-6-phosphate 1-phosphotransferase CPn0161 204622 - 203795 - | acetyltransferase CPn0162 205828 - 204800 - | hypothetical protein CPn0163 206026 - 206397 + | hypothetical protein CPn0164 206498 - 207001 + | hypothetical protein CPn0165 206998 - 207585 + | hypothetical protein CPn0166 207630 - 207965 + | hypothetical protein CPn0167 208306 - 207974 - | hypothetical protein CPn0168 208641 - 208414 - | hypothetical protein CPn0169 209501 - 208707 - | hypothetical protein TERM 207 209412 - 209401 - G 71 -4.4 -4.81863 | opp_overlap 209391 AAAGCGATAACAAAA GAAG TTAT CTTC ACTAATCTACTTTCA TERM 208 209880 - 209898 + r 91 -5.2 -5.81032 | opp_overlap 209880 TCGACTCTCTTGAAA GCTTCTTC TCT GGAGACGC TTTTTTTTAACATTA CPn0170 211026 - 210022 - | hypothetical protein guaA 212435 - 211146 - | GMP synthase TERM 209 211312 - 211330 + g 89 -11.8 -3.35706 | opp_overlap 211311 TCTACAGCACGTAAT GCTATGGT ATA ACCATAGC TTCTACAATCTCCTT guaB_1 213177 - 212437 - | inosine 5'-monophosphase dehydrogenase TERM 210 212514 - 212528 + g 71 -4.2 -4.77986 | ATTCAGTAATTCGAA CAAAGG AAG CCTTAG TTTTTAAATCTTTGA guaB_2 213501 - 213238 - | inosine 5'-monophosphase dehydrogenase TERM 211 213598 - 213628 + r 77 -9.2 -3.24289 | opp_overlap 213601 213618, overlap 213592 213593 213601 TCCTTCGAATCTTAA GAAGAAATTTCTTT GGA ACAGAAGTTTCTTC TTCCGTGTTTAGGCT CPn0173 213987 - 213712 - | hypothetical protein CPn0174 214257 - 214727 + | hypothetical protein CPn0175 214898 - 215278 + | hypothetical protein CPn0176 215286 - 216521 + | hypothetical protein TERM 212 216570 - 216523 - T 85 -9.4 -3.91032 | gap 1, opp_overlap 216529 216532, overlap 216525 216527 216532 TAATTACTGTATAAA TAG-AGTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATTTGCTT TCTAGAGAACTCATC TERM 213 216567 - 216525 - T 91 -12.2 -3.54 | opp_overlap 216529 216532, overlap 216523 216527 216532 ATTACTGTATAAATA GAGTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATTTG CTTTCTAGAGAACTC TERM 214 216565 - 216527 - T 100 -14.8 -3.34244 | opp_overlap 216529 216532, overlap 216525 216523 216532 TACTGTATAAATAGA GTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATT TGCTTTCTAGAGAAC TERM 215 216529 - 216563 + T 100 -21.8 -4.13995 | opp_overlap 216527 216525 216523 216532, overlap 216532 CTGTATAAATAGAGT TAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTA TTTGCTTTCTAGAGA TERM 216 216560 - 216532 - T 100 -19.1 -3.22943 | opp_overlap 216529 216532, overlap 216527 216525 216523 TATAAATAGAGTTAA GACATCCCCTTAA GTT TTAAGGGGATGTC TTATTTGCTTTCTAG TERM 217 216532 - 216560 + T 100 -19.1 -4.18676 | opp_overlap 216532 216527 216525 216523, overlap 216529 TATAAATAGAGTTAA GACATCCCCTTAA GTT TTAAGGGGATGTC TTATTTGCTTTCTAG CPn0177 217459 - 216605 - | hypothetical protein CPn0178 218052 - 217786 - | hypothetical protein CPn0179 218403 - 218053 - | hypothetical protein CPn0180 218906 - 218352 - | hypothetical protein CPn0181 219175 - 218774 - | hypothetical protein accC 220695 - 219331 - | acetyl-CoA carboxylase biotin carboxylase subunit TERM 218 220236 - 220247 + g 78 -4.4 -5.10077 | opp_overlap 220236 CGGCTTTAATAACAA TAGG GAAA CCTA TTTTTTCAGCTATTT accB 221195 - 220692 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit efp_1 221775 - 221218 - | elongation factor P TERM 219 221547 - 221535 - G 80 -2.7 -5.58209 | CTAAATCTAAAAAAA GATAA CTT TCATC TTCAAGATATAAATA rpe 222451 - 221762 - | ribulose-phosphate 3-epimerase TERM 220 222272 - 222257 - G 77 -6.2 -4.59773 | opp_overlap 222257 GTGGACTTCTAAAAA TAGATC CGTA GATCTA TTAATGGCAGCAATG TERM 221 223790 - 223780 - g 75 -5.4 -4.89838 | TCAAGAAATAGAAAA GTTG GCC CAAC ATGAAACATCTTTGC CPn0186 222899 - 224071 + | IncA TERM 222 224136 - 224107 - f 100 -15.3 -4.3739 | opp_overlap 224107 GACTTCCTTAGAAAA TAAGCAGTAAAGT TTTA ACTTTACTGCTTA TTTTTTTTTGAAATG TERM 223 224107 - 224136 + F 100 -15.3 -6.09133 | opp_overlap 224107 GACTTCCTTAGAAAA TAAGCAGTAAAGT TTTA ACTTTACTGCTTA TTTTTTTTTGAAATG TERM 224 225004 - 224991 - g 70 -5.3 -4.47551 | opp_overlap 224997, overlap 225003 AGCTAAGGCAGAAAA CCTTT GTCG AAAGG AATTTCCATTATTCC CPn0187 224248 - 225048 + | methylase CPn0188 225111 - 226403 + | hypothetical protein TERM 225 227844 - 227822 - g 80 -2.6 -5.46657 | opp_overlap 227822, overlap 227806 227802 227823 CACTTTAATAAAAAA TGGCAGGAGA TTC TCTCTCCCCA CTTCTCTTACGCTGA TERM 226 227954 - 227944 - g 73 -5.4 -4.67608 | TACTGCAAGAGAAAA TGAG CTG CTCA TCCATGCAAAATTTG TERM 227 228271 - 228258 - g 71 -6.7 -4.23434 | CAAAAGACTTGAAAA TCCAG GGTT CTGGA GAGATATTTTCTTTG TERM 228 228718 - 228729 + G 74 -4.4 -4.92757 | CTTCTATGATAATGT GTCT AAAG AGAC TTTTATTATTAATGA TERM 229 229411 - 229424 + G 71 -2.4 -5.23292 | GCAATTTGTAGAATC TTGG TTCACT CCAA TTTTCTTTTCTGTAC CPn0189 226400 - 229828 + | hypothetical protein TERM 230 231212 - 231197 - g 74 -6.2 -4.48987 | TCTCTACAATTAAAA CAAACT AATC AGTTTG AAAACTCCCCTGTCG CPn0190 229919 - 231277 + | hypothetical protein TERM 231 231314 - 231279 - T 71 -7.6 -3.62096 | opp_overlap 231282 231285, overlap 231280 231282 GGTCAGGATTCTAAA GTATCACTACAGCTGC TCTA GCAGCTGTAGTCCTAT TGAGCAGAGTGGATA TERM 232 231313 - 231280 - T 81 -11.1 -2.77043 | opp_overlap 231282 231285, overlap 231279 231282 GTCAGGATTCTAAAG TATCACTACAGCTGC TCTA GCAGCTGTAGTCCTA TTGAGCAGAGTGGAT TERM 233 231282 - 231311 + T 74 -9.3 -3.02144 | opp_overlap 231280 231279 231282, overlap 231285 CAGGATTCTAAAGTA TCACTACAGCTGC TCTA GCAGCTGTAGTCC TATTGAGCAGAGTGG TERM 234 231311 - 231282 - T 73 -9.3 -2.93089 | opp_overlap 231282 231285, overlap 231280 231279 CAGGATTCTAAAGTA TCACTACAGCTGC TCTA GCAGCTGTAGTCC TATTGAGCAGAGTGG TERM 235 231285 - 231308 + T 100 -15.4 -2.73875 | opp_overlap 231282 231280 231279, overlap 231282 GATTCTAAAGTATCA CTACAGCTGC TCTA GCAGCTGTAG TCCTATTGAGCAGAG glnQ 231991 - 231311 - | amino acid ABC transporter ATPase glnP 232634 - 231981 - | amino acid ABC transporter ATPase argR 233126 - 232683 - | arginine repressor gcp_2 233210 - 234244 + | O-sialoglycoprotein endopeptidase TERM 236 235290 - 235267 - gf 70 -2.6 -5.0538 | gap 1, overlap 235268 GCTTACGCTAAAAAA CTCTT-TAAAG AAG CTTTAGAAGAA CTCCAAATCACTGCT oppA_1 234190 - 235788 + | oligopeptide binding protein TERM 237 235838 - 235860 + F 73 -6.9 -4.00868 | opp_overlap 235838, overlap 235841 GAATCTTATACTAAA CTGGGTGCC TTTGT GGCACCTCG TTTCCTTCTGACTGC TERM 238 235841 - 235857 + F 74 -9.4 -3.04864 | opp_overlap 235838, overlap 235838 TCTTATACTAAACTG GGTGCC TTTGT GGCACC TCGTTTCCTTCTGAC TERM 239 236521 - 236501 - g 76 -10.5 -3.00525 | CTCTGCGAAACTATA GCACCTCTT TTG AAGAGATGC CCATTACCTGCGGTG oppA_2 235939 - 237522 + | oligopeptide binding protein TERM 240 237588 - 237601 + G 75 -2.3 -5.3321 | TTAAAATGTTTTCAC GATGG ATCA CCCTC TTTTTATTATTCATT oppA_3 237578 - 238885 + | oligopeptide binding protein TERM 241 238879 - 238909 + F 93 -3.3 -6.09888 | gap 1, overlap 238908 CAAATATACCTATTT CCCCTAGACAAAAG AAGT CTTTGGTA-AGGGG TTTTTTTTATTGAAG oppA_4 239169 - 240749 + | oligopeptide binding protein oppB_1 241042 - 241986 + | oligopeptide permease oppC_1 242017 - 242871 + | oligopeptide permease oppD 242864 - 243718 + | oligopeptide transport ATPase oppF 243715 - 244503 + | oligopeptide transport ATPase CPn0203 245008 - 245805 + | hypothetical protein TERM 242 245924 - 245936 + G 70 -7.7 -3.6502 | AGGCTGTTTTGTCTA TTGGG AAT CCCAA TTTAAATCCGCACTG CPn0204 245817 - 246005 + | hypothetical protein CPn0205 246133 - 246330 + | hypothetical protein CPn0206 246409 - 247164 + | hypothetical protein TERM 243 247947 - 247935 - g 80 -6.3 -4.7497 | overlap 247938 247940 TCTACCCACCAAAAA TCACA TCT TGTGA AGAGGCTATCCGATC TERM 244 248042 - 248052 + G 71 -6.8 -4.1413 | TTTTTCCTCCTTGTA GTCC TCT GGAC TTTTGGAGATCTCTT ybhI 247208 - 248620 + | dicarboxylase translocator TERM 245 248715 - 248678 - f 100 -15.1 -2.60813 | opp_overlap 248678 248681 248688, overlap 248682 TATTTTGTGAAATAT GAAAGCTAAATCATAGG ACCA CCTGTGATTTAGCCTTC TGTCATAAGCTCTCT TERM 246 248678 - 248715 + F 100 -15.1 -2.80622 | opp_overlap 248678 248682, overlap 248681 248688 TATTTTGTGAAATAT GAAAGCTAAATCATAGG ACCA CCTGTGATTTAGCCTTC TGTCATAAGCTCTCT TERM 247 248681 - 248712 + F 89 -11 -3.54951 | opp_overlap 248678 248682, overlap 248678 248688 TTTGTGAAATATGAA AGCTAAATCATAGG ACCA CCTGTGATTTAGCC TTCTGTCATAAGCTC TERM 248 248711 - 248682 - f 100 -12.3 -4.00532 | opp_overlap 248681 248678 248688, overlap 248678 TTGTGAAATATGAAA GCTAAATCATAGG ACCA CCTGTGATTTAGC CTTCTGTCATAAGCT TERM 249 249719 - 249695 - g 70 -9.3 -2.8478 | opp_overlap 249696, overlap 249694 249698 ACCACTTCATTAAAC TTATGGGACGC TCA GCATCCCATAT TGCTTTGGAATGTGC TERM 250 249696 - 249718 + G 80 -10.6 -3.53745 | opp_overlap 249695 249694 249698 CCACTTCATTAAACT TATGGGACGC TCA GCATCCCATA TTGCTTTGGAATGTG TERM 251 249716 - 249698 - g 76 -11 -2.67981 | opp_overlap 249696, overlap 249695 249694 ACTTCATTAAACTTA TGGGACGC TCA GCATCCCA TATTGCTTTGGAATG TERM 252 250402 - 250390 - g 80 -2.7 -5.46698 | CCTAAAATTAAAAAA TACCT CGT AGATA TAGGAAGCACGGCAT pfkA_2 248953 - 250605 + | diphosphate--fructose-6-phosphate 1-phosphotransferase CPn0209 251036 - 251275 + | hypothetical protein CPn0210 252384 - 251437 - | hypothetical protein TERM 253 251565 - 251586 + g 74 -4.5 -4.77719 | TACTTTTAGCAATTG CAAACTCAA GCTC TTTAGTTTG TTTTATTCCCTTTTC TERM 254 252190 - 252219 + g 78 -10.3 -3.38072 | gap 1 AGCATTCCACGCATC GAT-TGCTTTTTGA GAC TCAAAAAGCACATC TTCATCTTCCGTAGC CPn0211 252756 - 252460 - | hypothetical protein CPn0212 254066 - 252885 - | hypothetical protein TERM 255 253515 - 253527 + g 74 -6.3 -4.43012 | TGCCTCTTTACACTG CTCTA AAA TAGAG TTTTGCTCTTGGGCT TERM 256 253813 - 253786 - G 79 -11.4 -2.52896 | opp_overlap 253775 253785 TTAGGCTCTAATCCA TAGCGCTCCTTA AATT TAAGAAGCGCCA ATCCTATACTTATTA CPn0213 254342 - 254187 - | hypothetical protein CPn0214 255657 - 254443 - | hypothetical protein CPn0215 257015 - 255756 - | hypothetical protein TERM 257 255935 - 255958 + g 75 -8.3 -3.75332 | opp_overlap 255935 CATACTCCTCTAAGA CTTTCTCTT GTTCCG AAGAGAAAG TTTGAGTTAAAAACT CPn0216 257608 - 257171 - | hypothetical protein ypdP 257896 - 258582 + | hypothetical protein CPn0218 259058 - 258579 - | hypothetical protein TERM 258 259135 - 259108 - H 73 -3.6 -5.13722 | overlap 259103 TTCATTAAAATAAAA GTTTTAAAAAGA TTAA TTTTCTTAAAAC AAAATATCCCCAATA TERM 259 260023 - 260039 + G 76 -10.9 -2.62184 | overlap 260025 CGTTTTGTTGAGGAT GAGCCAT TCG ATGGCTC TGCTATCGGAGGCAG TERM 260 260082 - 260106 + G 86 -10.1 -4.03234 | opp_overlap 260068, overlap 260068 CCTTCAAGAAATGTC TGAAGTGGTTA AAA TCACCACTTCA TTTCTATCAAAAGAA tgt 259357 - 260475 + | queuine tRNA-ribosyltransferase TERM 261 260619 - 260599 - f 95 -2.7 -6.22691 | opp_overlap 260599, overlap 260603 TAAGAATAAAAAAAA TTAATTTTT ATT AAAAAATAA TTAATTTATCGGATT TERM 262 260777 - 260760 - g 83 -9.1 -4.07868 | CGATATTCAGAGAAA CGCCCTC GAAA GAAGGCG TGGCATATAAACTTC CPn0220 260696 - 261241 + | hypothetical protein TERM 263 261340 - 261388 + F 100 -14.8 -3.78934 | CGAAGTACCTATACG TAGCAGCTACTAAGAAAAAAGG AATCC CCACTTCTCTTAGTAGCTGCTA TTATTATAAAAGACG CPn0221 261657 - 262067 + | hypothetical protein CPn0222 262504 - 262845 + | hypothetical protein CPn0223 262956 - 263336 + | hypothetical protein TERM 264 263368 - 263343 - f 71 -6.3 -4.16033 | gap 1, opp_overlap 263340 263343 263351, overlap 263348 263351 TGCAAATAACAACAA TTAATCCACGCC TAC GGCGT-AATTAA ATTGTATCTTTTTAG CPn0224 263435 - 263677 + | hypothetical protein TERM 265 264115 - 264129 + G 82 -8.6 -4.33621 | opp_overlap 264115 264117 AATTGCTTTAGCCAA CATAGG TTT CCTATG TTTATTACTTAGATG TERM 266 264351 - 264329 - g 75 -8.4 -3.84284 | opp_overlap 264335 264338 264342, overlap 264332 GCAAAAGTTATGAAA GAAGGAGCCG AAG CAGCTTCTTC AATTAAACAAGCTGT CPn0225 263873 - 264544 + | hypothetical protein TERM 267 264603 - 264585 - g 80 -10.3 -3.43109 | overlap 264583 CATACTATGCAAACA CCCTGGA GTTCA TCCAGGG AACTCAAAGTCTATG CPn0226 264566 - 264970 + | hypothetical protein dsbB 265416 - 265006 - | putative disulfide oxidoreductase dsbG 266110 - 265409 - | disulfide bond chaperone CPn0229 266328 - 267563 + | hypothetical protein CPn0230 268253 - 267573 - | hypothetical protein TERM 268 267639 - 267651 + g 74 -4.8 -4.84539 | TTCTTTCTTAGCTTC GCGT TCGTC ACGC TTTTCTCTTTGGTTC tauB 268957 - 268250 - | nitrate/iron ABC transporter ATPase TERM 269 268717 - 268729 + g 91 -7.7 -4.76041 | AAGCCGTACGCCAAG GAAGC AGG GCTTC TTTTTGCTGCATATA CPn0232 270122 - 269229 - | putative 5'-methylthioadenosine nucleosidase TERM 270 269397 - 269374 - G 77 -8.2 -3.98913 | TTCACACCTAAACAA GGAATGCTAT ATTC ATAGCATACC TGAGAAACAGCGCCG TERM 271 269487 - 269470 - G 73 -9.9 -3.05194 | overlap 269462 269469 AAGGAAAGAAAATAG TTTCGCG ACAT CGCGAAA GACTCGCCTGTAGCA CPn0233 270424 - 270245 - | hypothetical protein TERM 272 270513 - 270493 - R 100 -11.9 -6.04953 | opp_overlap 270493 ATATAAATAAAAAAA CCATTGCCA ACC CGGCAATGG TTCTTAAAACACAAA TERM 273 270493 - 270513 + r 90 -11.2 -3.61398 | opp_overlap 270493 ATATAAATAAAAAAA CCATTGCC AACCC GGCAATGG TTCTTAAAACACAAA CPn0234 271240 - 270545 - | hypothetical protein TERM 274 271558 - 271531 - g 73 -7.2 -4.22041 | gap 1, opp_overlap 271531 AAAGCTTAATACAAA GAACTTATGAGAA TGC TTCCCA-AAGTTC TCTATTAGATAAAAT kdsB 271416 - 272180 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 275 272184 - 272199 + G 73 -9 -3.53343 | opp_overlap 272183 272186 GCATATTTTTAACAG GAGGAG TTGT CTCCTC TTTAGGAAAAGGGTT pyrG 272156 - 273769 + | CTP synthetase TERM 276 274069 - 274054 - g 72 -7.6 -3.89346 | overlap 274037 TTTCTACGGTAGAAA TCATCC TATG GGATGA ACGGCTTTCTTCAGT TERM 277 274157 - 274147 - g 71 -3.2 -4.99134 | ATCGGAAAGGAAAAA CAGA TTC CCTG GCTGCAACATTAATC TERM 278 274206 - 274180 - g 73 -8.2 -3.68936 | CATTAATCTTAACAA GTTTTCTAGATA GCT TACCTAAAAAAC TAACCTTGTAATCAT yggF 273762 - 274217 + | Holliday junction resolvase-like protein TERM 279 274816 - 274758 - g 74 -7.7 -4.02911 | gap 1, opp_overlap 274774, overlap 274773 274777 TTTAAATAAACATAA GCTTTTCTATAA-AAATCAAGACCAAGG GAAA CCCTGGTCCCGTGTCATTATAGAAAAAC CTTTTGGAAGAGACT TERM 280 274800 - 274773 - g 80 -6.2 -4.82901 | opp_overlap 274774, overlap 274758 274777 GCTTTTCTATAAAAA TCAAGACCAAGG GAAA CCCTGGTCCCGT GTCATTATAGAAAAA TERM 281 274796 - 274777 - g 84 -10 -3.88001 | opp_overlap 274774, overlap 274773 274758 TTCTATAAAAATCAA GACCAAGG GAAA CCCTGGTC CCGTGTCATTATAGA TERM 282 275695 - 275707 + G 91 -7.7 -4.79826 | GGAGATGAAGTTATG GCTTC TTG GAAGC TTTTTACTCCTGTAT zwf 274303 - 275841 + | glucose-6-phosphate 1-dehydrogenase TERM 283 276332 - 276355 + G 71 -3.2 -5.05782 | gap 1, opp_overlap 276337 TTATGTTAGGACTAG GAGAAGATGGT CAC ACCCT-TTCTC TTTTTTCCAATACCT TERM 284 276567 - 276553 - g 90 -7.2 -5.24796 | GGTAGAGAAGAAAAA CTCTAT CCT ATAGAG CGTGTAGGTAGGGAC devB 275899 - 276675 + | 6-phosphogluconolactonase CPn0240 277861 - 276695 - | hypothetical protein CPn0241 279354 - 278200 - | hypothetical protein TERM 285 279070 - 279080 + g 70 -2.6 -5.0133 | CAGGGGACAACACCC TATT CCA AATA TTTTTTCAAAAAATC CPn0242 279918 - 279484 - | hypothetical protein TERM 286 280119 - 280089 - R 100 -12.8 -5.1244 | opp_overlap 280089 280091 CCATGAATATAAAAA TAGAGGTCTTTCTA GCT TAGAAAAACCCCTA TCTATAGTTATTACC CPn0243 280555 - 280130 - | hypothetical protein TERM 287 280618 - 280577 - H 78 -7.7 -4.15044 | CCTCCCTTTAACAAA TTTTAATAAAAAAACTAAA TAAT TATAGTTTATTTATTAAAA AAAATAAAGTTATAT adk 280918 - 281559 + | adenylate kinase ydhO 281645 - 282502 + | polysaccharide hydrolase-invasin repeat family TERM 288 282517 - 282486 - T 95 -8.9 -4.84359 | opp_overlap 282486 282491, overlap 282491 282511 GGATCCCTAGAAAAA GAAAAGCCTTTCT GTAATA AGAAAGGCTTTTT CCAAAAACGATTCGA TERM 289 282512 - 282491 - T 95 -8.8 -5.35224 | opp_overlap 282486 282491, overlap 282486 282511 CCTAGAAAAAGAAAA GCCTTTCT GTAATA AGAAAGGC TTTTTCCAAAAACGA TERM 290 282491 - 282512 + T 89 -8.8 -4.56597 | opp_overlap 282486 282491 282511, overlap 282486 CCTAGAAAAAGAAAA GCCTTTCT GTAATA AGAAAGGC TTTTTCCAAAAACGA TERM 291 282569 - 282580 + T 70 -2.2 -5.38047 | CTTAGAGAATTGGAA GCTT TTAC GAGC TTTTTTATGTCCGTA rpsI 282952 - 282548 - | 30S ribosomal protein S9 TERM 292 282987 - 283003 + r 75 -8.1 -3.84825 | overlap 282992 ATCTAATAAAATTGG CTTTTGA GAT TCAAAAG TTTCGTATGAATCCC rplM 283415 - 282966 - | 50S ribosomal protein L13 ycfV 284327 - 283647 - | ABC transporter ATPase TERM 293 283865 - 283877 + g 73 -5.5 -4.63527 | opp_overlap 283854 283865 TTAACGCTCTAGCAA TAGCG ACT CGCTG TTTTTCCCCTCCTGA CPn0249 285841 - 284330 - | hypothetical protein TERM 294 284523 - 284540 + g 85 -5.7 -5.2422 | AAATAGTTCAGTGCT TTTACAA TGAA TTGTAAA TTTTTTAATGTAATT TERM 295 284858 - 284871 + g 77 -3.9 -5.20328 | GACACCTAAGGAAGT TAGAA TATT TTCTA TTTGTTTTTTTACAA rpmG 286057 - 285899 - | 50S ribosomal protein L33 TERM 296 286095 - 286079 - g 71 -4.5 -4.63218 | opp_overlap 286079 GTCCTTTTAAGAAAA TAGTAAA TCG CTTACTA TGCTATATTTCTTTT TERM 297 286468 - 286484 + G 72 -9.5 -3.10641 | opp_overlap 286466 GATGAGCTTAAACCC TGGATGT CAC ACATCCA TTACCTACTAGGTTC TERM 298 287049 - 287033 - g 70 -7.3 -3.76224 | opp_overlap 287019 CTTCTAGGGAGCAAA TCCTAGG ATT CCTAGAA AAATTACGTGCCAAG TERM 299 287572 - 287524 - g 89 -6.2 -5.40072 | gap 2, opp_overlap 287524 287527 287528, overlap 287525 287532 CGTGTTGTAAAAAAA TCTCAGAA-CC-AAGCTTTGCTAA AAA CTAGCAAAGCTTAGGGTCCTGTGG TTAGTTAACAAAAGG TERM 300 287571 - 287525 - g 84 -9.7 -3.83561 | gap 2, opp_overlap 287524 287527 287528, overlap 287524 287532 GTGTTGTAAAAAAAT CTCAGAA-CC-AAGCTTTGCTAA AAA CTAGCAAAGCTTAGGGTCCTGTG GTTAGTTAACAAAAG TERM 301 287562 - 287532 - g 100 -14.2 -3.47063 | opp_overlap 287528 287527 287524, overlap 287525 287524 AAAAAAATCTCAGAA CCAAGCTTTGCTAA AAA CTAGCAAAGCTTAG GGTCCTGTGGTTAGT CPn0251 286060 - 287562 + | hypothetical protein CPn0254 289262 - 288456 - | hypothetical protein CPn0255 290165 - 289326 - | hypothetical protein TERM 302 289854 - 289837 - G 78 -2 -5.47159 | overlap 289839 289849 TTGGAACAGAAAAAA TATTCG GGAGAA CGAACA TAATTCGCTGGCACC TERM 303 290344 - 290394 + r 100 -14.2 -3.63515 | opp_overlap 290347, overlap 290347 CCAAGTGATATAAGG AAATCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGATGA TTATTCAACGTAAGG TERM 304 290347 - 290391 + r 100 -20.3 -2.93549 | opp_overlap 290347, overlap 290344 AGTGATATAAGGAAA TCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGA TGATTATTCAACGTA TERM 305 290391 - 290347 - R 100 -24.7 -4.04576 | opp_overlap 290347 290344 AGTGATATAAGGAAA TCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGA TGATTATTCAACGTA CPn0256 291264 - 290395 - | hypothetical protein TERM 306 291049 - 291060 + g 75 -3 -5.1523 | GGTGCTTGTAGGTCT GATA TTTA TATC TTTTTGTATTGTAAG CPn0257 292127 - 291264 - | hypothetical protein TERM 307 293553 - 293565 + r 72 -4.8 -4.66264 | TCTGAAATTAATCTT CCTC AACTG GAGG TTTTTGAGAGTTTTC secA_1 294045 - 293545 - | protein translocase subunit TERM 308 293753 - 293766 + g 75 -3.1 -5.2189 | TCTTCTTTTGCCTGA GCTTT CTTA AGAGC TTTTTTACTCATTAC TERM 309 294148 - 294102 - H 77 -4.7 -5.10163 | gap 1, opp_overlap 294115 AAGCTCAAAATAAAA TCCAAAGTCAAATGCAAAAACC TATT GCTTTTTTC-TTTAACCTTGGA ACCTAGTACTCGTTA TERM 310 294115 - 294129 + H 80 -2.8 -5.64421 | opp_overlap 294102 AATCCAAAGTCAAAT GCAAAA ACC TATTGC TTTTTTCTTTAACCT ydaO 294302 - 295036 + | PP-loop superfamily ATPase surE 295091 - 295936 + | stationary phase survival protein SurE TERM 311 295960 - 295984 + F 79 -8 -4.0031 | opp_overlap 295962, overlap 295949 TAGTCTTTGGTATCA GAGGTCTTTT TTTAC AAAAGATCTC TTGTTTAATCGAGAT TERM 312 296194 - 296178 - f 75 -10.1 -2.62933 | CAATTGGTTAGAGCA CCGCCCT GTC AAGGCGG AAGTTGCGGGTTCGA yqfU 296249 - 297139 + | hypothetical protein ubiD 297730 - 297152 - | aromatic acid decarboxylase ubiA 298620 - 297727 - | prenyltransferase TERM 313 297956 - 297933 - G 75 -3.2 -5.15117 | opp_overlap 297947, overlap 297947 CAAAACCTGAAAAAA TATAAGCAAG ATAA CTTACCCATA AGTTTACTTTTGCAA TERM 314 298582 - 298563 - G 82 -2.2 -5.61596 | opp_overlap 298564, overlap 298564 ATGCTGATAAAAAAA GTATTGAA AATA TTGAATAC TTAAAATTAACTAAA TERM 315 298708 - 298735 + H 88 -7.8 -4.89852 | gap 1, opp_overlap 298713, overlap 298709 298710 TCCCCCCAATCTTTT TA-GAACCCCCTA TGT TAGGGGGTTCGTC TTTTTATGCCTCTAC TERM 316 298709 - 298733 + H 100 -12.9 -4.06785 | opp_overlap 298713, overlap 298708 298710 CCCCCCAATCTTTTT AGAACCCCCTA TGT TAGGGGGTTCG TCTTTTTATGCCTCT TERM 317 298710 - 298732 + H 100 -16.4 -3.02986 | opp_overlap 298713, overlap 298709 298708 CCCCCAATCTTTTTA GAACCCCCTA TGT TAGGGGGTTC GTCTTTTTATGCCTC TERM 318 298729 - 298713 - H 91 -12.3 -3.30159 | opp_overlap 298710 298709 298708 CCAATCTTTTTAGAA CCCCCTA TGT TAGGGGG TTCGTCTTTTTATGC CPn0266 299184 - 299879 + | hypothetical protein TERM 319 299948 - 299903 - f 78 -2 -5.64873 | overlap 299905 TTTAAGAACAAAAAA GGGTTTTAAAGTAGGTAAAT GAGAAA ACTTACTCACTATAAAACTC TTAAAACTATAAAAA CPn0267 300122 - 300913 + | hypothetical protein CPn0268 300935 - 301321 + | hypothetical protein TERM 320 301347 - 301325 - T 77 -5.5 -4.95155 | opp_overlap 301325 CTTATAGGATAAAAA CAGTGCGAA TGAGT TCCGCCCTG TTTAATACTGTGTTA CPn0269 302450 - 301473 - | dipeptidase ywlC 303325 - 302465 - | SuA5 superfamily-related protein CPn0271 303634 - 304365 + | lysophospholipase esterase dnaX_2 305233 - 304337 - | DNA polymerase III subunit delta' TERM 321 304823 - 304847 + g 95 -12.3 -3.36837 | overlap 304821 304811 CAATCTCTGAACTTT TGCTGTTGTCA ATA TGATAACAGCA TGTTTCGGAGGTTCT TERM 322 304892 - 304880 - G 71 -4.8 -4.62302 | GAAGACTTTTAAAAA TGCG GAAAT CGCA GCTAAAGTCATTCGA tdk 305844 - 305224 - | thymidylate kinase gyrA_1 308353 - 305849 - | DNA gyrase subunit A TERM 323 307737 - 307754 + g 78 -9.9 -3.53012 | opp_overlap 307733 307732 ACTTGTAAAATCTCA TCCACAG AAGC CTGTGGA TTTGCAAGCAGAAGA gyrB 310786 - 308369 - | DNA gyrase subunit B TERM 324 309695 - 309671 - G 73 -3.5 -5.00884 | ATTCTCTTCAAAAAA GATTGTCAGAG CTT CCCCTACAACC TGTTGAGCCACTGAG CPn0276 311137 - 310790 - | hypothetical protein CPn0277 311910 - 311401 - | hypothetical protein CPn0278 312875 - 312057 - | outer membrane lipoprotein protein CPn0279 313537 - 312872 - | ABC transporter permease TERM 325 313243 - 313233 - G 71 -3.2 -4.93661 | ATAGTAACAACAAAA GGAA TGG CTCC GATAGTGAGAGGAAC TERM 326 313530 - 313541 + g 71 -3 -4.91511 | ATCTGAATAAGATCG GATT GCAT AATC TTTTTCTAATAAAAT dppF_1 314572 - 313547 - | peptide ABC transporter ATPase TERM 327 313662 - 313636 - G 73 -7.5 -4.20868 | gap 1, opp_overlap 313643 CTTCCAAAACAATAA TTAGA-AATCCC ATTG GGGATTTTCTAA ATAAATTAATGTTGC TERM 328 313643 - 313654 + g 73 -5.8 -4.43501 | opp_overlap 313636 AACAATAATTAGAAA TCCC ATTG GGGA TTTTCTAAATAAATT TERM 329 314415 - 314430 + g 80 -9 -4.07568 | opp_overlap 314415 314408 TCAAGAAAGTCTAAA CAACGC AAAA GCGTTG TTTTCCCAGAACCGC TERM 330 314430 - 314415 - G 78 -9 -3.76534 | opp_overlap 314415, overlap 314408 TCAAGAAAGTCTAAA CAACGC AAAA GCGTTG TTTTCCCAGAACCGC TERM 331 314633 - 314619 - H 78 -7.2 -4.3821 | AAAATAGAATACAAA GAATCT TGA AGATTC GTTAACCATTAAACT dhnA 315057 - 316106 + | fructose-bisphosphate aldolase TERM 332 316159 - 316144 - g 83 -9 -4.18494 | CACTCCCACTCAAAA CCAACG AAAC CGTTGG GAACATTCACGGTCG TERM 333 316650 - 316666 + G 73 -5.9 -4.46072 | overlap 316652 CTTTTGGATTTTTTC TGGCAAT CCC ATTGCTA TTTCTCTTTCTTGGG xasA 316126 - 317532 + | amino acid transporter CPn0283 318497 - 317529 - | hypothetical protein TERM 334 317572 - 317560 - G 74 -4.1 -5.07652 | opp_overlap 317564 317567, overlap 317564 TTTGGGAAAAGAAAA GAAAG AAG CCTTC CTTGTTGTATGGCAG TERM 335 317600 - 317564 - G 82 -5.8 -5.04377 | opp_overlap 317564 317567, overlap 317560 GGAAAAGAAAAGAAA GAAGCCTTCCTTGTTG TATGG CAGCCTGGAAAGCTTC TGGATTCAAATTTGC CPn0284 319045 - 318548 - | hypothetical protein CPn0285 320595 - 319048 - | hypothetical protein TERM 336 319679 - 319691 + g 75 -3.4 -5.09225 | GTAAGAAGATTAGGG TCGT ATGCA ACGA TTTTTTCAATACACT mgtE 322059 - 320647 - | Mg2+ transporter TERM 337 320795 - 320779 - G 76 -2.9 -5.33405 | overlap 320780 320781 CTTAGCAAAGAAAAA TGGGGAT AAA ACCCCTA GAGTCGTAGCTGTGA TERM 338 321822 - 321810 - G 74 -4.8 -4.77759 | ACAACCTACGAAAAA TCGC CCACC GCGA AGCAGAATCTGTATT CPn0287 324221 - 322086 - | hypothetical protein TERM 339 324348 - 324296 - R 73 -3.8 -5.14163 | gap 1, overlap 324299 ACCCACTAATAAAAA CTAGTTTTTGAAAAGAATTCTAAAA ACCT TCTTTTAAT-CTTTTCAAAAACAAG AACATCTATTTCTTA CPn0288 325716 - 324568 - | hypothetical protein TERM 340 325256 - 325267 + g 70 -5.8 -4.30034 | opp_overlap 325250 325256 TCTAGATAAGAGCAA GCAC TCAC GTGC TTTTCATCGAATTTT TERM 341 325896 - 325911 + G 79 -7.6 -4.30987 | GGTTTAGGAAGTGTG CAATCC CCAT GGATTG TTTATTCTGCCGAAT TERM 342 326315 - 326304 - g 71 -3 -5.06414 | TTTCTTCAAGAAAAA GAAA AACA TTTC GTAAATCAATTTTTT aaaT 325812 - 326999 + | neutral amino acid (glutamate) transporter CPn0290 327042 - 328526 + | Na-dependent transporter TERM 343 328568 - 328537 - f 75 -9.6 -2.59526 | overlap 328540 TATAAATCCAATCGA TAATTCTACTCTGA ATAT TCAGGGTAGAATCA CAGCATTTTGGAAAG TERM 344 328565 - 328540 - f 79 -9.1 -3.43965 | overlap 328537 AAATCCAATCGATAA TTCTACTCTGA ATAT TCAGGGTAGAA TCACAGCATTTTGGA incB 328667 - 329197 + | inclusion membrane protein B incC 329228 - 329839 + | inclusion membrane protein C CPn0293 329949 - 332726 + | hypothetical protein TERM 345 333305 - 333290 - g 81 -4 -5.27938 | overlap 333291 ATCTCTAAAGAAAAA CTAGAG TCTC CTCTAA ATTTAAAACCTTTAG TERM 346 333356 - 333339 - g 70 -7.1 -3.83026 | GTTTTGGAGAGGAAA GCTTATT CAAT AATAAGC CCAGGGAATACAATG CPn0294 333092 - 333505 + | cAMP-dependent protein kinase regulatory subunit acpP 333863 - 333624 - | acyl carrier protein fabG 334765 - 334019 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 347 334728 - 334738 + g 78 -4 -5.1101 | CCTCGAGATCCTCCA GTTA CTA TAAC TTTTTTGCCTACTAA fabD 335697 - 334771 - | acyl-carrier-protein S-malonyltransferase fabH 336721 - 335714 - | 3-oxoacyl-(acyl carrier protein) synthase III recR 336816 - 337418 + | recombination protein RecR yaeT 337783 - 340155 + | OMP85 family membrane protein CPn0301 340250 - 340765 + | OmpH-like Outer membrane protein TERM 348 340967 - 340954 - g 86 -6.7 -5.0133 | opp_overlap 340954 340953 TAGCTTTCTAAAAAA CACCA AAGC TGGTG CTATTATTTTATCTA lpxD 340787 - 341869 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CPn0303 342958 - 341918 - | hypothetical protein TERM 349 341948 - 341969 + g 89 -6.7 -5.29846 | ACGTACTCTTCTTTT TATCATGAG AATT TTCATGATA TTTTTATTTAAAATT TERM 350 342668 - 342642 - G 71 -9 -3.30771 | CTACATCCGGGAGAA TAAAAAAATAAC TGA GCTATTTTTTTA TCCATCGAAGTTAAC TERM 351 342723 - 342741 + g 85 -2.4 -5.82316 | overlap 342724 TCCAACTCTTCATTT TTGAATGG CAA CCATTGAG TTTTTTTTAAGTAGT TERM 352 343618 - 343606 - g 100 -6.3 -5.95946 | opp_overlap 343606 TCAAGAACAAAAAAA TAGAG TTT CTCTA TGCTTTATCGGAGAT pdhA 343133 - 344161 + | pyruvate dehydrogenase Alpha TERM 353 344714 - 344703 - g 75 -7.2 -4.35874 | GAATATAACTTAAAA GGGG AAGT CCCC ACCGAAGAATATCTC pdhB 344154 - 345140 + | pyruvate dehydrogenase Beta pdhC 345145 - 346434 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 354 346448 - 346493 + T 74 -9.1 -3.12874 | opp_overlap 346452, overlap 346451 346479 AGCAATCTTTGAACA AAAAGGACTCTTTCTATAGCT CCTT GGCTATGGAAAGAGTCCCTGA TTCCATCCTGTCTAT TERM 355 346451 - 346490 + T 100 -15.2 -2.7674 | opp_overlap 346452, overlap 346448 346479 AATCTTTGAACAAAA AGGACTCTTTCTATAGCT CCTT GGCTATGGAAAGAGTCCC TGATTCCATCCTGTC TERM 356 346489 - 346452 - T 100 -15.8 -5.06816 | opp_overlap 346451 346448 346479 ATCTTTGAACAAAAA GGACTCTTTCTATAGC TCCTTG GCTATGGAAAGAGTCC CTGATTCCATCCTGT glgP 348986 - 346512 - | glycogen phosphorylase TERM 357 347928 - 347913 - G 70 -7.6 -3.7108 | ATTGGTATAGTTAAA GATGAC TGTA GTCATC TCCCAAGCCTTATCC TERM 358 349077 - 349096 + H 70 -8 -3.32844 | opp_overlap 349076 TAAATAAAAGAGAGC CTATTAAG AGAG CTTAATAG TTCTGAACTAGAGAA TERM 359 349595 - 349573 - g 84 -6.4 -4.93365 | GTCCAGAAGCAAAAA TTAGAGGA TCGTTAC TCCTCTAA ATAATCATCTCTTCG CPn0308 349234 - 349599 + | hypothetical protein dnaA 350974 - 349592 - | chromosomal replication initiation protein TERM 360 349669 - 349691 + g 95 -7.8 -5.0095 | opp_overlap 349671 TAGAAATATCTTGAA TAGCCATG TGAATAT CATGGCTA TTTTCTTCTATTTTT TERM 361 350861 - 350847 - G 73 -7.2 -4.21933 | GTAATTTGAAAAGAA TCTTGA GCT TCAAGA TACAAATTACAAGCA 60IM 353433 - 351046 - | putative inner membrane protein translocase component YidC TERM 362 351429 - 351418 - G 70 -5.8 -4.258 | CCACCCAGGAATAAA CGAG GCTC CTCG TAATAAGAATGATGA TERM 363 352323 - 352341 + g 85 -9.6 -4.10179 | AAACATAGGGCTTTT CTTCCGGA TTC TCTGGAAG TTTGTATACCTTCTG lgt 354438 - 353572 - | prolipoprotein diacylglyceryl transferase TERM 364 354273 - 354238 - G 76 -2.6 -5.40625 | gap 1, opp_overlap 354248, overlap 354231 354239 AGAGTATATAAAAAA GTTTTCTAAAGCCACGC GTA GC-TGGCTTTTGGAAAA ACTTAAATGATCTTT CPn0312 354524 - 354979 + | hypothetical protein acpS 354990 - 355358 + | 4'-phosphopantetheinyl transferase trxB 356285 - 355350 - | thioredoxin reductase TERM 365 355907 - 355921 + g 77 -8.6 -3.91072 | GCCAAAATTCATCGT TTCCTG CTC CAGGAA TTTCTAAACGTTTAG rpsA 356977 - 358719 + | 30S ribosomal protein S1 TERM 366 358742 - 358774 + F 86 -10.2 -3.5754 | gap 1, opp_overlap 358740 358745, overlap 358738 358746 TGCTGGTAATGCAGA GGATCGTATTATTTA GTTC TAAATAATACG-TCC TTAATTTAGCTATTT TERM 367 358746 - 358771 + F 81 -10.7 -2.90283 | opp_overlap 358745 358740, overlap 358742 358738 GGTAATGCAGAGGAT CGTATTATTTA GTTC TAAATAATACG TCCTTAATTTAGCTA TERM 368 359148 - 359135 - gf 72 -8.1 -3.39556 | overlap 359133 AATTTTGGAAGAATA GCTGC TCAC GCAGC ACGACAAATTATCGG TERM 369 359646 - 359634 - gf 76 -6.3 -4.51097 | opp_overlap 359634 TGAACGATGAGAAAA TTGAC ATT GTCAA TTACTCCCCCGTCTC nusA 358820 - 360124 + | transcription elongation factor NusA TERM 370 360187 - 360174 - gf 78 -2.3 -5.49568 | opp_overlap 360174 360186, overlap 360186 AAGCTAAAACAAAAA CTTGC CCAA GCAGG ATCTTCTGAAGCTAA TERM 371 360231 - 360219 - gf 71 -4.1 -4.82901 | opp_overlap 360186, overlap 360186 360221 TCTTCTTCAGAAAAA CCTTC TGC GAAAG AAAAGTCTGTAAAAG TERM 372 360729 - 360718 - gf 74 -5.8 -4.52589 | TTGCTTCAGATAAAA CAGG GAAA CCTG GAACATCTGAAGGTG infB 360081 - 362753 + | translation initiation factor IF-2 TERM 373 363106 - 363093 - g 71 -4.5 -4.63586 | overlap 363094 AGATTATATAGAAAA CCTGC TTTG GCAGA TTCAAGAGAAAGAAA rbfA 362767 - 363129 + | ribosome-binding factor A truB 363175 - 363882 + | tRNA pseudouridine synthase B ribF 363860 - 364786 + | bifunctional riboflavin kinase/FMN adenylyltransferase ychF 365858 - 364764 - | translation-associated GTPase TERM 374 366502 - 366534 + G 73 -8.4 -3.66732 | opp_overlap 366504 TTATGCTTATTTTAA CAGCATCACTTCCC TTACT GGGAGCTGTTGCTG TTGTTGGCGTCATTG yscU 366249 - 367331 + | type III secretion system protein TERM 375 368549 - 368579 + G 71 -9 -3.36273 | opp_overlap 368559 ATGCGGCAAGCTCTC TATCAGGATATCGG AAT CCGATACCCTGGCA TTCATGTTCGCACAG lcrD 367331 - 369463 + | low calcium response D TERM 376 369583 - 369558 - g 100 -13.3 -3.31144 | opp_overlap 369559, overlap 369573 CTTGCAGCTGTAGAA GCTGCAGCTGC AAAA GCAGATGCAGC AGAAGTTGTAGCCAG TERM 377 369757 - 369744 - g 75 -2.4 -5.25803 | AAGGCTGAGAAAAAA TCTG AATCTA CAGA AGAGAAGCCTGACAC lcrE 369492 - 370691 + | low calcium response E sycE 370708 - 371151 + | secretion chaperone malQ 371148 - 372728 + | glucanotransferase TERM 378 372731 - 372712 - f 77 -9.4 -3.26722 | overlap 372710 GTTACATTGAGAAGA TCCTTACA GGAC TGTAAGGA TAGCAATAAAACATT rpmB 372945 - 373214 + | 50S ribosomal protein L28 TERM 379 373943 - 373955 + G 78 -9.1 -3.85698 | overlap 373928 GCTACCTTCCTCCAA GGAGC GAA GCTCC TTTATAAAAAAACAA TERM 380 374036 - 374010 - g 81 -12.2 -2.53382 | overlap 374024 ACGATGCGGAATTCA TCCTGGTCGGAG AAT CTCCGGCCGGGA AACGTCGTCCTGAAG CPn0328 373241 - 374995 + | hypothetical protein TERM 381 375021 - 375035 + F 78 -2.2 -5.61881 | overlap 375021 ATTCTATTAAACGTT TAATTA AAT TAGTTA TTTTTATTTTTAAAA TERM 382 375410 - 375388 - g 70 -3.6 -4.77438 | ATCTACTATCAAAAA TTTAAAATTC CCC AAATCTTAAA GCAAGCCAGCAATGT CPn0329 375088 - 376149 + | phopholipase D superfamily protein CPn0330 376675 - 376199 - | hypothetical protein TERM 383 376456 - 376472 + g 72 -6.5 -4.38712 | opp_overlap 376456 GACGCAACTGAGAAA GCAAGAC CTT GGCTTGC TTTTGTCCGAGTAGC TERM 384 376573 - 376584 + g 79 -3 -5.31275 | opp_overlap 376573 CTTCATTCGTAGCAA TTTC CTCA GAAA TTTTTTCTACTAAAG CPn0331 378437 - 376698 - | hypothetical protein TERM 385 376958 - 376936 - G 76 -7.6 -4.15066 | opp_overlap 376936, overlap 376932 TACTGATAAATCAAA GGATCTGGAG GAC CTCCAGGACC TTTATGAGCTTCGAG TERM 386 376936 - 376958 + g 86 -9.8 -3.92522 | opp_overlap 376936 376932 TACTGATAAATCAAA GGATCTGGAG GAC CTCCAGGACC TTTATGAGCTTCGAG TERM 387 378011 - 377994 - G 71 -2 -5.11063 | gap 1, opp_overlap 377997, overlap 377996 AGCATCTAAGAAAAA TC-CCTG CATTT CAGGTGA AATACGGTTTCCCTT CPn0332 378655 - 378533 - | hypothetical protein TERM 388 378579 - 378559 - G 100 -15.5 -6.60239 | opp_overlap 378564 AAAAACAAAAAAAAA CGCAAGGTG AAA CACCTTGCG TAAAAAAACTTATGG TERM 389 378666 - 378708 + r 100 -18.8 -3.2056 | ATCACTCGGATCCGA CTGTCTAGGTATTAAGATTT TGG AGATCTTAATACCGAGACAG TTCCTAACTCTAAAT TERM 390 378747 - 378774 + r 95 -3.4 -6.28631 | gap 1, overlap 378754 CAGGCTTCCTGTCGT TC-CATCACGGGA TAG TCCCGTTCTGCGA TTTTTTTTTAATTTA TERM 391 378754 - 378766 + r 79 -9.1 -3.47063 | overlap 378747 CCTGTCGTTCCATCA CGGGA TAG TCCCG TTCTGCGATTTTTTT CPn0333 379090 - 378797 - | late transcription unit B protein TERM 392 379158 - 379144 - H 70 -2.2 -5.27477 | overlap 379145 ATTTTAATTAAAAAA CTTATT AAG AATAAA CTAATTTTAATCTAA CPn0334 379311 - 379826 + | hypothetical protein TERM 393 380609 - 380595 - gf 76 -10 -2.78395 | opp_overlap 380593, overlap 380592 AATGCGCAGCAATCA CTCCAG TTC CTGGAG GCGTTGGTCCCATGA folD 379817 - 380677 + | methylene tetrahydrofolate dehydrogenase yojL 380650 - 381594 + | hypothetical protein smpB 382027 - 381572 - | SsrA-binding protein TERM 394 381640 - 381652 + g 84 -6.3 -5.00616 | CTATGATCGTACGAC GCTTA TCA TAAGC TTTTTTCCCACGACA TERM 395 382005 - 382015 + g 71 -4 -4.85599 | AGAGCCTTGCGATTA GAAA CAA TTTC TTTTTGTGCCATAAG TERM 396 382986 - 383002 + G 70 -7.3 -3.87075 | ATCACAAAACTTCTT TCTGGAG AAT TTCCAGA TTTCTCCCCCGTCAT TERM 397 383105 - 383120 + G 73 -2.6 -5.09762 | gap 1, opp_overlap 383099 383100, overlap 383108 ATTTACAAATGAGTC CTCTCAC TCC GTGA-AG TTTTCTTTCTTACCC dnaN 382278 - 383378 + | DNA polymerase III subunit beta TERM 398 383394 - 383383 - T 72 -5.8 -4.27441 | overlap 383384 ATGATGATTAATAAA CTCC CTAA GGAG AATCCTTTAGGTCAC TERM 399 385044 - 385021 - T 70 -2.4 -5.2166 | GAAGAAGCCAAAAAA GAAAAGCTAT TCTC ATGGCTCCTC CGAACGCAGGGTCTA yaeL 387420 - 385555 - | metalloprotease TERM 400 386708 - 386728 + g 78 -10.5 -3.33696 | overlap 386693 386711 TTCGGACGTAGCTCT GAATTCTCC ATA GGAGAGTTC TTCGTTAGGGGCACC TERM 401 387152 - 387142 - G 75 -3.2 -5.17353 | AGACTTACTAAAAAA TCCC TGA GGAA TATCATAGACAGAGT yaeM 388572 - 387433 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 402 388459 - 388447 - G 70 -2.7 -5.0133 | TAGTTGCTGAAAAAA TAACC TTA GATTA TTTCCATAAGAAGCC ytgD 389675 - 388701 - | integral membrane protein ytgC 391021 - 389675 - | integral membrane protein TERM 403 390082 - 390068 - G 79 -8.6 -4.2243 | opp_overlap 390068 AGAAATATGCCAAAA CACCTT TAA AAGGTG TTCTTGATCCTTTGA TERM 404 390068 - 390082 + g 75 -8.6 -3.79909 | opp_overlap 390068 AGAAATATGCCAAAA CACCTT TAA AAGGTG TTCTTGATCCTTTGA ytgB_1 391803 - 391024 - | rRNA methylase ytgA 392770 - 391787 - | solute protein binding family TERM 405 392642 - 392623 - G 70 -9.4 -2.79273 | opp_overlap 392621, overlap 392622 392625 CTCTTTCAACACAAT CATGAATC ATGC GATTCATG GATAGTATACAAGGA CPn0350 393181 - 393687 + | hypothetical protein TERM 406 393860 - 393849 - f 82 -3 -5.72053 | CAACGAAATAAAAAA CTAT CAGA ATAG AAAATAAAAGTATTT adt_1 393888 - 395435 + | ADP/ATP translocase TERM 407 395460 - 395487 + F 100 -12.8 -6.11243 | TCTTACTCTTGTTGA TCCCTACCTGCT TTTT AGTGGGTAGGGA TTTTTTTTATTAACT TERM 408 395552 - 395540 - f 74 -6.3 -4.4078 | TTTTTTCAATCAAAA GGTTA TAA TAACC GTGAGACATTCTGGT TERM 409 396156 - 396142 - g 73 -3.6 -4.93877 | overlap 396137 TCGGATTAAATAAAA CACAAA AAG TTTATG GTTTACTTGGGCCCT TERM 410 396816 - 396799 - g 86 -2.7 -5.75478 | overlap 396809 AACTAGAGAAAAAAA TAGAAAG CAGT CTCCCTA TACGATCTTCCCTAT CPn0352 395574 - 396833 + | hypothetical protein TERM 411 396948 - 396936 - g 74 -4.9 -4.8543 | TAATTTTTATAAAAA GAATA CGT TATTC CCAATCGGGAAAAGA TERM 412 397019 - 396996 - g 82 -4.6 -5.40072 | opp_overlap 396999 397018, overlap 396999 CTTTTTTTAAAAAAA GCATAACAAG CTCT CTCGTTATTC TTCTTCTAGAAGCTA TERM 413 397097 - 397084 - g 73 -2.5 -5.10208 | CAATTTCAATAAAAA TTTTA AAAA TAAAA ACATTTCTATTAATA CPn0353 396893 - 397138 + | hypothetical protein TERM 414 397823 - 397807 - g 73 -5.1 -4.68384 | ATCGAGTTAAGAAAA TTGGAGG CAG CCTCGAA GAAGACCTTAGTGAT TERM 415 398487 - 398462 - g 72 -9.8 -2.81072 | overlap 398456 398461 TCCACTCAAGAGAAG CGTCTTCTCC CAACCT GAAGAAGACG AGTCCTCCCTGCTGA CPn0354 397167 - 398510 + | hypothetical protein CPn0355 399889 - 398588 - | hypothetical protein CPn0356 400459 - 400106 - | hypothetical protein CPn0357 401317 - 400466 - | hypothetical protein CPn0358 401751 - 401575 - | hypothetical protein lepA 402012 - 403820 + | GTP-binding protein LepA TERM 416 403881 - 403908 + T 89 -3.4 -5.95286 | gap 1, opp_overlap 403881 TAGTGGTGAACTAAA TCTCGAG-CTACC TAG GGTCTTCTCGAGA TTTTTTATTTTTACT gnd 405358 - 403919 - | 6-phosphogluconate dehydrogenase tyrS 406647 - 405379 - | tyrosyl-tRNA synthetase TERM 417 406010 - 405980 - G 100 -11.8 -4.16016 | opp_overlap 405980 405979 GCATTCGTTAATAAA GGATAGGTAAGGCC GTA GGCCTGACCCAACC CTTTACGGCGAATAA TERM 418 406449 - 406427 - G 75 -9.1 -3.72576 | GCTCCCCCGACTAAA GCTATGGGG GTAAT CCCCAGAGC AGCGAGTCTCTTCAA rpsD 407825 - 407052 - | RNA polymerase sigma factor sigma-28 flhA 409688 - 407940 - | type III secretion system protein TERM 419 409122 - 409100 - G 79 -7.8 -4.30576 | CGTTCACGAGTAAAA GGATACAACT AAT AATTGCATCC CCTTTAACAAAACGA TERM 420 409165 - 409185 + g 95 -2.5 -6.28401 | opp_overlap 409165 409167, overlap 409167 ATGGCAGAGAAGAAA TCCCCTTCT TCT ATAAGGGCA TTTTTTTGTTTTTTG fer4 409966 - 410241 + | ferredoxin IV TERM 421 411197 - 411185 - g 78 -9.1 -3.85969 | overlap 411180 411178 GAAATAAATACAGAA CTCCC TGC GGGAG ATTCAGGAGAACGTT CPn0365 410528 - 411547 + | hypothetical protein TERM 422 411684 - 411672 - f 77 -5.5 -4.88736 | GATGAGGGACAAAAA GGCTC CTA AAGCC TCCAAGATCTTTCCA TERM 423 411915 - 411897 - f 74 -3.2 -5.23292 | opp_overlap 411901, overlap 411901 411904 TTACACAAAAGAAAA TATAGAAT TTT ATTCTCTA ATAAAAATTAAATTA CPn0366 411976 - 412443 + | hypothetical protein TERM 424 412918 - 412940 + F 75 -8.4 -3.75824 | opp_overlap 412918 CAAGTGGAGAAAAAA CTCTGTGTGG CAC CCACTTAGAG TTCTCTTATGAACTA TERM 425 412940 - 412918 - f 84 -6.2 -5.27923 | opp_overlap 412918 CAAGTGGAGAAAAAA CTCTGTGTGG CAC CCACTTAGAG TTCTCTTATGAACTA TERM 426 413060 - 413044 - f 70 -2.3 -5.34309 | overlap 413046 413047 ATTATCAAAGAAAAA GATTTTT TGT AAAAAAC AACAAATTAAGATAT TERM 427 413244 - 413282 + GF 75 -8.2 -3.78034 | overlap 413262 CAGCTCTTATTCTTG CTTTAGCCATAGCTGTAG GGA CTGCAGTTGTTGCTGGAG TTCTTGGTATGCCTC CPn0367 413102 - 413839 + | hypothetical protein CPn0368 413790 - 414110 + | hypothetical protein TERM 428 414534 - 414546 + G 79 -3.3 -5.26316 | overlap 414528 ATTGCTGCTGGCATT TTGGC TAT GCCTA TTTTTTCTGCCGTAG CPn0369 414351 - 415565 + | hypothetical protein CPn0370 415800 - 416915 + | hypothetical protein CPn0371 417147 - 417506 + | hypothetical protein TERM 429 417579 - 417601 + F 80 -9.2 -3.6053 | opp_overlap 417572 GAAAATATGAGAGTG TCTCCTCCTA TTT TAGTAGGAGA TTAATTTGTAAAACA TERM 430 417658 - 417645 - f 70 -3.9 -4.90471 | ATTTAAAATAGAAAA CTATA AAAT TATAG GGCTTGTCATAGAAA CPn0372 417687 - 418004 + | hypothetical protein TERM 431 419773 - 419754 - g 73 -7.2 -4.24183 | opp_overlap 419772 GACAATAAAGAAGAA GCTGCTAT TTCC ATAGCAAC AGAGTTTGGAGCTCT gcpE 418380 - 420221 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CPn0374 420218 - 420964 + | hypothetical protein CPn0375 421121 - 421618 + | hypothetical protein CPn0376 421854 - 422297 + | hypothetical protein TERM 432 422333 - 422302 - T 90 -8.2 -5.10077 | gap 1, opp_overlap 422310, overlap 422310 AAAGAGGTTAAAAAA TCTGA-AAAGGCTCT AAA AGAGCCTTTATGAGA ATCAGAGAAATTACA TERM 433 422324 - 422310 - T 100 -10 -4.33739 | opp_overlap 422310, overlap 422302 TAAAAAATCTGAAAA GGCTCT AAA AGAGCC TTTATGAGAATCAGA TERM 434 422310 - 422324 + T 83 -10 -3.87815 | opp_overlap 422310 422302 TAAAAAATCTGAAAA GGCTCT AAA AGAGCC TTTATGAGAATCAGA sucB_1 423438 - 422344 - | dihydrolipoamide acetyltransferase TERM 435 422940 - 422922 - G 71 -3.1 -4.98531 | opp_overlap 422895 TTCGCAAATGAAAAA GAGGTGT CATAT AGACCTC ATTGAATGTCGTGAG kgd 426168 - 423442 - | alpha-ketoglutarate decarboxylase TERM 436 424301 - 424275 - G 100 -14.6 -3.04188 | overlap 424268 GAGGAGAATTATACA TTTCTACAGAGC CCT GCTCTGCAGAAA GATGGTACAATGGAG TERM 437 424391 - 424405 + g 76 -10 -3.37236 | CGAATAGAATCTTGA CCTGAG AGT CTCAGG TTGTACCCTTCGATT TERM 438 425726 - 425710 - G 82 -8 -4.4572 | AAGATTCCAAACAAA CTCCTG CAACT CAGGAG TACATGTTAGGGTTT TERM 439 426076 - 426062 - G 76 -2.8 -5.41143 | overlap 426064 TACCCTTCAAAAAAA TACTTC CAA GAAGGA TCCAAAGTCTCGTGA CPn0379 426322 - 426768 + | hypothetical protein TERM 440 426931 - 426943 + G 74 -4.1 -5.00616 | CCAAGAGACGCATTT CATAG AGA CTGTG TTTTTTGGAGGGGGA TERM 441 427831 - 427859 + G 71 -8.9 -3.37028 | opp_overlap 427821 AAATAGACAGGGCCG TCTCTTCCACGAT ACA ATAGCGGAAGAGA TTATGGGATATTCCT hemN_1 426758 - 427879 + | coproporphyrinogen III oxidase CPn0381 429809 - 428034 - | hypothetical protein yabC_1 430749 - 430033 - | SAM-dependent methytransferase TERM 442 430553 - 430538 - G 71 -3.2 -4.96848 | overlap 430523 430539 GGCTCTAGATAAAAA TCCCAA GCCT TAGGGA GGCGCGCATGTTTAC CPn0383 431693 - 430746 - | hypothetical protein TERM 443 431827 - 431797 - R 93 -6.9 -5.61881 | gap 1, opp_overlap 431802 431803 CCTTAAAAAGAAAAA CGGGAA-GGAAACC CAAT GTTTCCCTTTCCCG TTAACATGAGCAATA hctB 432377 - 431859 - | histone-like protein 2 TERM 444 432489 - 432455 - R 100 -11.1 -6.09888 | opp_overlap 432455 CTTTAATAAAAAAAA TGACTTTTATTTTAA AAAAA CTAAAATAAAAGTCA TTACTAAAACATAAA TERM 445 432455 - 432489 + r 83 -10.4 -3.14931 | opp_overlap 432455 CTTTAATAAAAAAAA TGACTTTTATTTTA AAAAAAC TAAAATAAAAGTCA TTACTAAAACATAAA pepA 434018 - 432519 - | leucyl aminopeptidase TERM 446 433306 - 433293 - G 71 -6.7 -4.10612 | ACGGACAACGATAAA GTGTG GATC CACAC AAGAACCCTTGGAAA TERM 447 433906 - 433926 + g 73 -2.6 -5.12617 | gap 1, opp_overlap 433906 433921, overlap 433906 433907 433909 433923 TACGAGGGTTCAAAC T-CGGCTTC AAAA GAAGCTGCA TTTTTTGCATCCTTA ssb 434525 - 434043 - | single-strand DNA-binding protein CPn0387 435196 - 434696 - | hypothetical protein TERM 448 435593 - 435583 - g 70 -5.4 -4.57569 | TCATGGGCCTAAAAA GCAT GGA ATGC AATACTCTTTTAAAG TERM 449 437274 - 437248 - g 74 -8 -4.07568 | GTTTGTCCCTCAAAA TGTAGCAACGCC GAC AGTGTCGCTACA GCCCCATACCACGCT glgX 435329 - 437323 + | glycogen hydrolase (debranching) CPn0389 438134 - 437316 - | hypothetical protein ruvB 439144 - 438131 - | Holliday junction DNA helicase B CPn0391 439692 - 439507 - | hypothetical protein TERM 450 439661 - 439675 + g 74 -4.2 -5.05116 | CGTGATAAAATTGTA GCCTTT GGG ATAGGC TTTTCTTGTTTATAC dcd 439814 - 440386 + | deoxycytidine triphosphate deaminase CPn0393 440379 - 440726 + | hypothetical protein TERM 451 441870 - 441856 - g 77 -8.6 -3.93262 | GGTTAATAGAGCAAA TCGGAA CGA TTCCGA CAACAGGAATGAAAC tlyC_1 440736 - 441971 + | CBS domain protein (hemolysin homolog) CPn0395 441964 - 443178 + | hypothetical protein yhfO 444353 - 443238 - | NifS-related aminotransferase TERM 452 443343 - 443328 - G 73 -2.5 -5.08255 | opp_overlap 443333 443335 ATGGCTAAAAGAAAA CCTGA GTGTTG CCAGG GTCAACTCTTCATCA TERM 453 444271 - 444286 + g 78 -5.4 -5.01732 | opp_overlap 444285 GGATTCGCGTACGTC CCTTCT ATAA GGAAGG TTTTTTGGAGAAATT CPn0397 445115 - 444378 - | PP2C phosphatase family protein TERM 454 444478 - 444514 + g 71 -8.2 -3.55378 | overlap 444477 TCTAGGGTGGCGGGC TGGTTCAAGATATC ACGAATATC GATATCTGGAACCA TGTTTGTCAATCCAT TERM 455 444570 - 444550 - G 77 -8.4 -3.98661 | CAGAGGCAGTACAAA TCTTCCTT TTCAC AAGGAAGA TTCCGAATGTCAGGC TERM 456 445419 - 445449 + H 93 -12.8 -3.35867 | opp_overlap 445417 AAGGGTTCAACTACG CACCATGAGTTT TAATCAC AAACTCATGGTG TTCCTTAGAAGTTCA CPn0398 445533 - 445703 + | hypothetical protein TERM 457 446058 - 446082 + G 70 -7.9 -3.72893 | AAAGAGTCTTGAACC TTTACCTTGGA ACC TCCAAGGAGAA TTTACTGAAGAGATC CPn0399 445879 - 446526 + | hypothetical protein TERM 458 446632 - 446662 + G 76 -6.8 -4.4634 | opp_overlap 446634, overlap 446630 446634 GGGAAAACACCTTTA AAGCTCCGCCAAGT TTT ATTTGGTGGTGCTC TTCTTGTTTTTTCTT TERM 459 446634 - 446660 + G 81 -9.4 -3.78069 | opp_overlap 446634, overlap 446632 446630 GAAAACACCTTTAAA GCTCCGCCAAGT TTT ATTTGGTGGTGC TCTTCTTGTTTTTTC CPn0400 446536 - 447309 + | hypothetical protein CPn0401 447884 - 447492 - | hypothetical protein mutY 448994 - 447885 - | adenine glycosylase yceC 449015 - 449713 + | pseudouridine synthetase family protein CPn0404 450887 - 449868 - | hypothetical protein CPn0405 451739 - 450963 - | hypothetical protein fabI 451969 - 452868 + | enoyl-(acyl carrier protein) reductase CPn0407 453742 - 452855 - | HAD family phosphatase/phosphatase TERM 460 452935 - 452892 - G 74 -10.4 -2.6472 | gap 1, opp_overlap 452908, overlap 452882 452908 TAATAGCGGACACCA GCTTCCCAAGCTGA-AAGAAT GCC ATTCTTATCTGCTGGGGGAGC TAGAAAGTCCGCATG TERM 461 453450 - 453439 - G 77 -3.6 -5.09225 | overlap 453417 ATTCCACGGAAAAAA GAGC CGTT GCCC CCTCCATACAATCTT TERM 462 453815 - 453830 + H 89 -9 -4.60797 | ATTCTTTGCATCCAC CGACAG ACTG CTGTCG TTTTGTCTATGAAAG CPn0408 454105 - 454584 + | hypothetical protein CPn0409 454645 - 455130 + | hypothetical protein dnaQ_1 455123 - 455836 + | DNA polymerase III subunit epsilon CPn0411 455833 - 456612 + | hypothetical protein CPn0412 456590 - 457249 + | hypothetical protein msbA 459203 - 457224 - | transport ATP binding protein TERM 463 457360 - 457372 + gT 71 -3.3 -5.08011 | overlap 457361 AAGAGTTCTTCTTTT GTGCC TTC GGCAA TTTTTTGACCATTTT TERM 464 457712 - 457728 + gT 89 -10.9 -3.68073 | CCTCCTCCTCCATAT CCTTACC ACA GGTAAGG TTATTCCATACAGTA TERM 465 459116 - 459098 - GT 91 -4.6 -5.63517 | overlap 459100 TCCCTAAAGAAAAAA TCTCCATC TGA GATGAAAA GGTAAGTCCTAAAAT accA 460143 - 459169 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 466 460046 - 460080 + gr 73 -7.4 -3.76393 | overlap 460054 AATTTCTGAATCTCT GAAGAAGATAAGAGAG AAT TTTTCTTATTTTTTTC TTTAAATTCGGCTAT TERM 467 460054 - 460072 + gr 95 -3.2 -5.96894 | overlap 460046 AATCTCTGAAGAAGA TAAGAGAG AAT TTTTCTTA TTTTTTTCTTTAAAT CPn0415 461498 - 460218 - | hypothetical protein TERM 468 460356 - 460332 - G 83 -8.7 -4.13767 | opp_overlap 460332 460332 GTCTGCATTCCAAAA TTTTTCTTTGC CTT GCAAAGCAAAA ATTTCCATATAGGGA TERM 469 460543 - 460515 - G 77 -4.6 -4.95843 | gap 2, overlap 460516 460542 ACAGAAAATAGAAAA CGTCATGGCAGAGG TGG CCTCAGCCA--ACG CAGCGTGCACGCGAT TERM 470 461526 - 461489 - G 100 -12.2 -5.3798 | gap 1 TAATAATAACAAAAA TTAGAGTCAAGCCCGGT AAAAA ACCGGTCT-GACTCTAA CAACTGAGACAAAGA himD 461856 - 461554 - | integration host factor Alpha amiA 463035 - 462241 - | N-acetylmuramoyl alanine amidase murE 464401 - 462950 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 471 463111 - 463127 + gr 77 -3.7 -5.08824 | overlap 463114 TTGCTTGTTTTCTGT CGATTTC GAT GAAATAG TTTTTTGAATAAAAC TERM 472 464457 - 464445 - R 77 -6.2 -4.82901 | opp_overlap 464444 CTTTTTTCATAAAAA GCCC TCTAG GGGC ATGCTCTCACTCTGA TERM 473 464809 - 464827 + r 83 -9.6 -3.73224 | opp_overlap 464803 GATAAAGAGGAGACG GGCTCTCT GAT AGAGAGTC TTTGCTCAACGGTAA pbp3 466834 - 464873 - | transglycolase/transpeptidase CPn0420 467108 - 466821 - | hypothetical protein mraW 467998 - 467105 - | S-adenosyl-methyltransferase MraW CPn0422 468242 - 468787 + | hypothetical protein TERM 474 469080 - 469065 - g 71 -4 -4.87803 | CACTCTTAAATAAAA CAAAAG CTCT CTTCTG TTTGGGACGAATTGA CPn0423 468791 - 469219 + | hypothetical protein TERM 475 469524 - 469502 - f 74 -9.2 -3.09671 | ATCTGAACGCGAAGA GTCATTGCAC TCA GTGCAATGAA TAGTCAAGATGCAAT TERM 476 470695 - 470684 - g 95 -3 -5.92399 | opp_overlap 470687, overlap 470677 CAACAAAACAAAAAA TTTC TGTA GAAA CGATCTTAAAAAGTG dnaA 469612 - 470964 + | chromosomal replication initiation protein CPn0425 470980 - 471567 + | hypothetical protein CPn0426 472111 - 471533 - | hypothetical protein TERM 477 471649 - 471664 + g 82 -4.7 -5.26155 | overlap 471658 ACAAAAAGCAGATAC CTTCC CCTTTA GGAAG TTTTTCTATTTGTCT TERM 478 471849 - 471839 - G 82 -2.4 -5.61596 | overlap 471841 ACTCTTAGAAAAAAA CTGC AGA GCGG GTCGCTTACCTTCAC TERM 479 472012 - 472024 + g 74 -6.3 -4.57341 | AACGCCCTTCTCTAT CTTCT ACG AGAAG TTTTTCCAAGCAGTT TERM 480 473358 - 473395 + G 73 -9.1 -3.53019 | opp_overlap 473357 473377, overlap 473375 CTCTTGGAGAACCAT GGCAGCCTTTGGGATAG GAGC CTTTCTCACAGGCTGGC TCTTTAAGTTTATCA nqr2 472207 - 473718 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 481 473995 - 473980 - g 74 -6.2 -4.45201 | overlap 473983 473984 TTCGATAAAAAAACA CAACTT CTTG AAGTTG CTACAAAAAAAGTCT nqr3 473722 - 474684 + | Na(+)-translocating NADH-quinone reductase subunit C nqr4 474681 - 475322 + | Na(+)-translocating NADH-quinone reductase subunit D nqr5 475326 - 476096 + | Na(+)-translocating NADH-quinone reductase subunit E CPn0431 476483 - 476148 - | hypothetical protein TERM 482 476401 - 476386 - G 79 -7.6 -4.25053 | CGATAAGATAAAGAA TTCTCC GAAT GGAGAA GGACACTAGAATACC CPn0432 476816 - 476511 - | hypothetical protein gcsH 477273 - 476926 - | glycine cleavage system protein H CPn0434 479462 - 477273 - | hypothetical protein TERM 483 478855 - 478845 - G 76 -6.8 -4.56597 | overlap 478847 TCTCTCTTCTAAAAA GAGC TTG GCTC TAGCAAGAAATCCTT TERM 484 479219 - 479176 - G 72 -7.6 -3.78022 | gap 1, overlap 479190 TTCATAGCCATGAAA TCTTTCTCTACATACCGCTTC CCT GAAGCGGTA-GTAAAAACAGT CCGACGTGAGGTGGA TERM 485 479206 - 479190 - G 89 -12.3 -2.87211 | overlap 479176 ATCTTTCTCTACATA CCGCTTC CCT GAAGCGG TAGTAAAAACAGTCC TERM 486 479451 - 479409 - G 86 -3.4 -5.74122 | gap 1, opp_overlap 479414, overlap 479410 479412 479413 TAGCAGAGAAAAAAA CCAGGCAGGATCCCTGCAG AGCCTG CAGAAGAGATCCTGT-TGG TAGATTCGCACCCAG CPn0435 480902 - 479472 - | phospholipase D superfamily protein lplA_1 481618 - 480899 - | lipoate protein ligase-like protein TERM 487 482381 - 482364 - g 78 -5.6 -4.82678 | opp_overlap 482359 482370, overlap 482359 TGACAAAAACGAAAA GCTTTC TGCTCT GAAAGC ATATGGTTATGATTT TERM 488 482573 - 482561 - g 77 -4.9 -5.00616 | GTCTGGCTCAAAAAA TCATT CTG AATGA GGTTCCTGATGCCTT TERM 489 483251 - 483232 - g 84 -3.6 -5.49569 | gap 1 GATGAAGAGAAAAAA CTTCGC-GA ACG TCTGCAAAG TATGAAACAGGAATG TERM 490 484268 - 484252 - g 75 -8.7 -3.61398 | TCCTGCCGTCAAGAA GCTCGCA AGC TACGAGC AACCTTGGTTGAAAA clpC 481816 - 484353 + | ClpC protease trmU 485416 - 484331 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CPn0439 485553 - 486080 + | hypothetical protein CPn0440 486105 - 486743 + | hypothetical protein CPn0441 486891 - 487841 + | hypothetical protein CPn0442 488013 - 488531 + | hypothetical protein TERM 491 488566 - 488548 - f 74 -3.2 -5.27938 | AGTTCCAAATAAAAA TAACTTAA AGT TTTAGTTA AAAATCTGTTAAGAT TERM 492 488590 - 488571 - f 70 -4.4 -4.66163 | overlap 488573 488581 AGTTTTAGTTAAAAA TCTGTTAA GATT TTAACAAA TAAACTTTATTTAAT TERM 493 488903 - 488880 - g 71 -6.8 -4.2243 | gap 1, opp_overlap 488880, overlap 488900 ATAAATATCCTAAAA TGCGCTATGTC TAT GACACAG-GCA TTATTGCCCTTGCGG CPn0443 488729 - 489982 + | hypothetical protein TERM 494 490227 - 490255 + F 77 -6 -4.72272 | opp_overlap 490238, overlap 490229 TCTATTGGTGCACCA TGCTCCTAAAGC CACAT GCTATGGGAGTA TTTTTGATAAAAAGC TERM 495 490887 - 490877 - g 75 -2.4 -5.32882 | opp_overlap 490877 490879, overlap 490879 TACTAGCACAAAAAA TGGC GGG GCCC TCTGTAGTACAGCAA TERM 496 494247 - 494268 + G 80 -8.7 -3.91028 | opp_overlap 494244 494247 TTCAAACACGAATCA GCAAAGCCC CCCA GTGCTTTGC TTCTTACTTTAGGTT pmp_6 490287 - 494510 + | polymorphic Outer membrane protein G/I family TERM 497 494498 - 494539 + F 77 -5.5 -4.84359 | gap 1, opp_overlap 494513, overlap 494499 AAACTGTGGAACTCG TTAT-TCTTTCTAAGATTCT CCG AGAATCTTAGAAAAACATAC TTTTTATAAAGATGA TERM 498 494499 - 494538 + F 75 -9 -3.50133 | gap 1, opp_overlap 494513, overlap 494498 AACTGTGGAACTCGT TAT-TCTTTCTAAGATTCT CCG AGAATCTTAGAAAAACATA CTTTTTATAAAGATG TERM 499 496069 - 496059 - g 71 -3.2 -4.96848 | overlap 496040 496064 TCCCCTACAGAAAAA GCAA TCG CTGC AAACGTCACCTCTAC pmp_7 494772 - 497582 + | polymorphic Outer membrane protein G family TERM 500 498442 - 498428 - g 84 -6.4 -5.03314 | opp_overlap 498430, overlap 498430 TTTATTGTGAAAAAA CAGGAG AGA CTCCTA CTCTTACTATCTCTG TERM 501 498440 - 498430 - g 71 -6.8 -4.14633 | opp_overlap 498430, overlap 498428 TATTGTGAAAAAACA GGAG AGA CTCC TACTCTTACTATCTC pmp_8 497626 - 500418 + | polymorphic Outer membrane protein G family TERM 502 500427 - 500452 + F 100 -14.9 -3.78934 | ATTCTAGTTCCTACT TTCCTCCCTAA ACTT TTAGGGAGGAA TTCTTATAAAAACCC TERM 503 501079 - 501065 - g 78 -10 -3.50853 | opp_overlap 501070 CTTTTCTAATGACAA TGGAGG CGC CCTCCA AGGCAGCTCTATCAG TERM 504 502380 - 502360 - g 80 -6.1 -4.84359 | TTACCTGGACAAAAA CAGGATACA ATC CGAATCCTG AGCGTCGTGGAACCT pmp_9 500568 - 503354 + | polymorphic Outer membrane protein G/I family TERM 505 503571 - 503533 - T 100 -12.5 -4.3767 | gap 1, opp_overlap 503536 503569, overlap 503536 503537 CTAGATCACAAGAAA GAATGGGCAGAGTACGTG ATCT CACGAACTCTGCCCGT-C TTAGAATCCAAAGAC TERM 506 503569 - 503536 - T 100 -15.3 -4.29119 | opp_overlap 503536, overlap 503533 503537 GATCACAAGAAAGAA TGGGCAGAGTACGTG ATCT CACGAACTCTGCCCG TCTTAGAATCCAAAG TERM 507 503536 - 503569 + T 100 -17.5 -3.05844 | opp_overlap 503536 503533 503537 GATCACAAGAAAGAA TGGGCAGAGTACGTG ATCT CACGAACTCTGCCCG TCTTAGAATCCAAAG TERM 508 503568 - 503537 - T 100 -18.8 -3.16387 | opp_overlap 503536, overlap 503536 503533 ATCACAAGAAAGAAT GGGCAGAGTACGTG ATCT CACGAACTCTGCCC GTCTTAGAATCCAAA TERM 509 503569 - 503586 + T 70 -4.1 -4.82667 | opp_overlap 503533 TCACGAACTCTGCCC GTCTTAG AATC CAAAGAC TTTTTAGTATACTAA yxjG_2 504810 - 503695 - | hypothetical protein TERM 510 503803 - 503791 - G 71 -6.9 -4.11664 | CTCACAAGAAGCAAA CCCAC ATT GCGGG CTCAAAGAAAGTCTC TERM 511 505010 - 504996 - H 100 -10 -5.04249 | overlap 504976 504973 CCCTTAAAAAAGAAA GAGACG TAC CGTCTC TGCAACTCTAATCTT TERM 512 505177 - 505223 + H 83 -7.3 -4.7254 | gap 1, opp_overlap 505168 505186, overlap 505178 505179 505183 505185 505186 TTAAAACGTGTTTGT AACAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTGCC TTTTTAATCCCCGAT TERM 513 505178 - 505222 + H 87 -10.8 -3.43042 | gap 1, opp_overlap 505168 505186, overlap 505177 505179 505183 505185 505186 TAAAACGTGTTTGTA ACAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTGC CTTTTTAATCCCCGA TERM 514 505179 - 505221 + H 93 -14.3 -2.65504 | gap 1, opp_overlap 505168 505186, overlap 505178 505177 505183 505185 505186 AAAACGTGTTTGTAA CAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTG CCTTTTTAATCCCCG TERM 515 505183 - 505218 + H 85 -10.4 -3.47218 | opp_overlap 505186, overlap 505179 505178 505177 505185 505186 CGTGTTTGTAACAAG AAAGGCAGAGTACGTG ACCT CACGAACTCTGCCCTC TTGCCTTTTTAATCC TERM 516 505185 - 505216 + H 91 -13 -3.29762 | opp_overlap 505186, overlap 505183 505179 505178 505177 505186 TGTTTGTAACAAGAA AGGCAGAGTACGTG ACCT CACGAACTCTGCCC TCTTGCCTTTTTAAT TERM 517 505215 - 505186 - H 100 -16.5 -4.44667 | opp_overlap 505185 505183 505179 505178 505177 505186 GTTTGTAACAAGAAA GGCAGAGTACGTG ACCT CACGAACTCTGCC CTCTTGCCTTTTTAA TERM 518 505186 - 505215 + H 100 -16.5 -2.56773 | opp_overlap 505186, overlap 505185 505183 505179 505178 505177 GTTTGTAACAAGAAA GGCAGAGTACGTG ACCT CACGAACTCTGCC CTCTTGCCTTTTTAA TERM 519 507599 - 507609 + H 71 -6.8 -4.26076 | opp_overlap 507599 GATTCTTGGTAGAAA TGGC TCC GCCA TTTTCCTCACAGTAA TERM 520 507805 - 507788 - H 75 -7 -4.19624 | overlap 507784 CAGTTGTAACAGAAA GTGCTG CGCCTT CAGCAC TAGACTTAATATTTA TERM 521 510479 - 510468 - g 74 -4.4 -4.99035 | TCAGCTATAGAAAAA TTCC CTAG GGAA ATTCCCCTAGCCTTG pmp_11 508275 - 511061 + | polymorphic Outer membrane protein G family TERM 522 511072 - 511092 + F 100 -11.2 -4.53607 | opp_overlap 511072 TCTAGATTGCTAAAA CTCCCTAG TTCTT CTAGGGAG TTTTCTCATACTTTT TERM 523 511092 - 511072 - f 100 -11.2 -4.13014 | opp_overlap 511072 TCTAGATTGCTAAAA CTCCCTAG TTCTT CTAGGGAG TTTTCTCATACTTTT pmp_12 511319 - 512863 + | polymorphic Outer membrane protein (truncated) A/I family TERM 524 512912 - 512941 + F 89 -13.7 -2.87683 | opp_overlap 512908 CTTTAAGAAGATTTT GGGACCTATCTGT ATTC AGAGATAGGTCCC TCTATGCACACATGT TERM 525 512969 - 512979 + F 72 -8.2 -3.36216 | overlap 512968 TGTTCACGAGTCTCG GGCG TAG CGCC ATTTTCTACTTTACA TERM 526 515819 - 515809 - g 77 -8.2 -3.95554 | opp_overlap 515807 515809 515809, overlap 515807 515810 GCATCCAAGAAAATA CCCC CGA GGGG AGGATTTTTGGACAC pmp_13 513234 - 516155 + | polymorphic Outer membrane protein G family TERM 527 516177 - 516188 + F 72 -5.8 -4.4572 | TTTAACGACAGGGTT GAGG CATG CCTC TTTCTTTCAAATCTT pmp_14 516182 - 519118 + | polymorphic Outer membrane protein H family TERM 528 519139 - 519121 - T 100 -11.8 -4.1721 | opp_overlap 519121 ATCCACATTTTAAAA CTCTAAGC TCT GCTTAGAG TTTTCTGTAGCCCCG TERM 529 519121 - 519139 + T 100 -11.8 -4.52589 | opp_overlap 519121 ATCCACATTTTAAAA CTCTAAGC TCT GCTTAGAG TTTTCTGTAGCCCCG CPn0455 520348 - 519455 - | hypothetical protein CPn0456 521532 - 520324 - | hypothetical protein TERM 530 521277 - 521293 + g 77 -6.5 -4.62168 | opp_overlap 521277 521276 521279 CGATTCTAGAAATAT GATCTCG GCC CGCGATC TTTTCTACTTTCAGT TERM 531 521650 - 521636 - R 71 -3.5 -5.11836 | overlap 521637 ACACTGAAAATAAAA CGCTC TTGTT GAGCA CGTTTTCCTAACAAA CPn0457 523865 - 522117 - | hypothetical protein TERM 532 523948 - 523922 - R 76 -4.4 -5.16472 | opp_overlap 523925, overlap 523926 AAAAACTTGAAAAAA GCAATCTCTAAG ATA CTTAGCGACTCC TATAGCCACAAGAAA CPn0458 526320 - 524233 - | hypothetical protein CPn0459 527005 - 526616 - | hypothetical protein CPn0460 527840 - 526989 - | hypothetical protein CPn0461 528638 - 527841 - | hypothetical protein TERM 533 528922 - 528912 - R 84 -5.4 -5.4833 | overlap 528918 TGACCTAAGAAAAAA GAAG AAT CTTC AAAAAAGAGCTCTGC TERM 534 528982 - 528968 - R 93 -8.6 -4.72007 | opp_overlap 528968 528970 GTTCATCAAAACAAA CACCTT AGA AAGGTG TGTCTAATTAGTTCC TERM 535 528968 - 528982 + r 71 -8.6 -3.03554 | opp_overlap 528968, overlap 528970 GTTCATCAAAACAAA CACCTT AGA AAGGTG TGTCTAATTAGTTCC CPn0462 531052 - 529034 - | hypothetical protein CPn0463 532357 - 531188 - | hypothetical protein TERM 536 531531 - 531543 + g 82 -7.7 -4.56597 | opp_overlap 531531 531530 CAGAATGCTAAGAAT CCTTC CCA GAAGG TTTTTGAAGGGAGCG CPn0464 532842 - 532363 - | hypothetical protein TERM 537 532446 - 532458 + g 75 -3.3 -5.14563 | overlap 532447 CAGTTTGGAGTTCCC AGGAG CTG CTCCG TTTTTTCGTAGGGAG CPn0465 533212 - 532868 - | hypothetical protein TERM 538 532920 - 532935 + g 86 -9 -4.27886 | opp_overlap 532931, overlap 532931 TTCCCCTCGTCTCTA GGCTCT AATG AGAGCC TTTGTCTCTTTAGAA TERM 539 532973 - 532987 + g 70 -10 -2.56271 | overlap 532972 532969 AACTCGACTTCTATG GTCGTG ACC CACGAC GTGTTCTACTCGCAC TERM 540 533222 - 533208 - G 72 -7.2 -4.00684 | opp_overlap 533208 533206 AGAGAAAAGTAATAA CTCATT AAA AATGAG TCTTTTAAAAAATAC TERM 541 533308 - 533295 - H 70 -3.9 -4.86773 | CAAAATCAGCAAAAA TCTAT AGGA ATAGA GATAAGTGGCTCTTA TERM 542 533492 - 533480 - H 73 -4.1 -4.93365 | opp_overlap 533482, overlap 533481 533482 CCTGAGAACCAAAAA CTGCT CTA AGCAA AGTATGCAAAGAGCT TERM 543 533804 - 533781 - g 81 -11.1 -3.34344 | opp_overlap 533779 533777 533781 GTATTGGCTAATGAA GGTCTCCAA CTTCCT TTGGAGACC TATATTACATTAAGT TERM 544 533781 - 533804 + G 79 -11.1 -3.13788 | opp_overlap 533781, overlap 533779 533777 GTATTGGCTAATGAA GGTCTCCAA CTTCCT TTGGAGACC TATATTACATTAAGT pmp_15 533724 - 536540 + | polymorphic Outer membrane protein E family TERM 545 537373 - 537361 - g 71 -4.7 -4.72201 | opp_overlap 537361 TGCGATAAAAAATAA CTCCG GGT CGGTG ATTTTCAATAACAAC TERM 546 537680 - 537667 - g 71 -6.7 -4.19746 | CGCATTTCAAAATAA TGAGG TTTT CCTCA CCACATTTGGTAGAT pmp_16 536633 - 539437 + | polymorphic Outer membrane protein E family TERM 547 539510 - 539478 - f 70 -7.2 -3.8591 | CTTTAGAATTAACAA CTATCCGA-TGAGCTA CGT TAGCCCAATCGG-TAG AGGACTCCCTCAAAA TERM 548 541432 - 541421 - g 93 -4.4 -5.78622 | TGACTGCAAAAAAAA TCGA TACT TCGA ATCTCATTGTAGAAG pmp_17.3 541357 - 542535 + | polymorphic Outer membrane protein (Frame-shift with CPn0469) TERM 549 543171 - 543184 + G 77 -3.7 -5.19212 | opp_overlap 543163 543171 ACATTAAGGACAACA CTGGC CCTT GCCTG TTTTTTAATAATGCT pmp_18 542564 - 545404 + | polymorphic Outer membrane protein E/F family TERM 550 545466 - 545444 - T 73 -7.1 -4.00532 | overlap 545450 CCTGTAAAGACCAAA TAGAGAGTA GTGAA CACTCTCTA CCATCATGAATCTTA CPn0472 547905 - 545578 - | hypothetical protein TERM 551 548002 - 548031 + r 81 -9.5 -3.75629 | opp_overlap 547995 548001 547999 548003, overlap 548003 TAAAATAATCAACAT ATTGAAGAGTTTT AATT AAAACTCTTCAAG TTTCCCTTGCGCATA TERM 552 548003 - 548030 + r 87 -13 -2.85056 | opp_overlap 547995 548003 548001 547999, overlap 548002 AAAATAATCAACATA TTGAAGAGTTTT AATT AAAACTCTTCAA GTTTCCCTTGCGCAT TERM 553 548030 - 548003 - R 91 -13 -3.25762 | opp_overlap 548002 548003, overlap 547995 548001 547999 AAAATAATCAACATA TTGAAGAGTTTT AATT AAAACTCTTCAA GTTTCCCTTGCGCAT CPn0473 549593 - 548067 - | hypothetical protein TERM 554 548912 - 548869 - G 85 -6 -5.24531 | opp_overlap 548869 548874 548875, overlap 548875 548877 ACTCCTGATAAAAAA GAAGAACTCTTCGAAGAAGC CTCT GCTTCTTCGGAACGCCTTTC TTTTACAGTATCGCC TERM 555 548906 - 548875 - G 82 -8 -4.44307 | opp_overlap 548875 548874 548869, overlap 548869 548877 GATAAAAAAGAAGAA CTCTTCGAAGAAGC CTCT GCTTCTTCGGAACG CCTTTCTTTTACAGT TERM 556 549295 - 549314 + g 73 -8.6 -3.5936 | overlap 549278 549287 549286 TCAGGACGCGCTTGA GGGGTTTT TTTA AAGACCCC TTTAACGCCTTTCCA TERM 557 549674 - 549657 - R 83 -2.1 -5.79595 | overlap 549650 549644 TGTTAAAATAAAAAA TATTTTA AAAA CAAAATA TAAATTAAAATAAAC CPn0474 551573 - 549804 - | hypothetical protein TERM 558 550208 - 550229 + g 76 -2.9 -5.26918 | overlap 550213 CCTCTTCACGAATTG CAGCGTCAG TCTT CTGAATCTG TTTTTTGTAGACTGT TERM 559 550763 - 550783 + g 71 -8.3 -3.53444 | AGGCTCTCCACTTTC CGATACTAC TAT GGAGTATCG TTTGCAAAACCGTCG glgB 553844 - 551682 - | glycogen branching enzyme TERM 560 553411 - 553396 - G 75 -5.4 -4.77757 | TGCCAAAAATTAAAA TCTCCG ACTA CAGAGA CTCTCTGCGCATGGG TERM 561 553754 - 553738 - G 71 -9.5 -2.9294 | overlap 553735 AAAATAACAATATGA TCTGAAG AAT CTTCAGA AGCAAGGATCCCTAA CPn0476 554844 - 553855 - | hypothetical protein TERM 562 554550 - 554562 + g 78 -9.1 -3.87149 | GGGGCCCTGCTTGCG CTGCC GAA GGCAG TTTCCCTTTGATAGA yqeV 556106 - 554841 - | hypothetical protein TERM 563 555314 - 555304 - G 81 -5.4 -5.20154 | opp_overlap 555307, overlap 555275 ACACAATCTAAAAAA TCTC CGC GAGA ATACTTCCGGTTCAT hflX 557625 - 556207 - | GTP binding protein TERM 564 557011 - 556991 - G 72 -9.7 -2.78384 | opp_overlap 556977 556991 CGCTGTTTGATCACA GCTTTCAGC TGT GCTGACAGC TTATGGATACGCTCA TERM 565 556991 - 557011 + g 76 -9.7 -3.36327 | opp_overlap 556991, overlap 556977 CGCTGTTTGATCACA GCTTTCAGC TGT GCTGACAGC TTATGGATACGCTCA phnP 558425 - 557613 - | metal dependent hydrolase TERM 566 558378 - 558345 - G 88 -9.5 -4.33274 | opp_overlap 558356, overlap 558346 TCTACATGAGCAAAA CGGCACGGGAATTCC TTCG GGATTTCCTGTGCCT AAAAATACTAATTTC TERM 567 558377 - 558346 - G 95 -13 -3.19482 | opp_overlap 558356, overlap 558345 CTACATGAGCAAAAC GGCACGGGAATTCC TTCG GGATTTCCTGTGCC TAAAAATACTAATTT CPn0480 559303 - 558647 - | hypothetical protein CPn0481 560946 - 559336 - | hypothetical protein artJ 561737 - 560958 - | arginine periplasmic binding protein TERM 568 561461 - 561473 + g 100 -7.7 -5.58209 | TTCCTGCTAAAATTG CATCG ATA CGATG TTTTTTTAAATTTAA TERM 569 563345 - 563335 - g 73 -5.4 -4.614 | opp_overlap 563340 563343, overlap 563340 TGCAACTATAGAAAA CAGA CGA TCTG GGGATCTCCCTTGGT TERM 570 563340 - 563369 + G 80 -6.4 -4.82091 | opp_overlap 563335 563340, overlap 563343 CTATAGAAAACAGAC GATCTGGGGATC TCCCTT GGTCTCCAGCTC TTTCTTTCTTTGCTT CPn0483 561836 - 564967 + | hypothetical protein aroG 564970 - 565827 + | 3-deoxy-7-phosphoheptulonate synthase TERM 571 565941 - 565955 + F 76 -4.4 -5.11063 | opp_overlap 565943, overlap 565938 AATTTTGTTTTATTA TATTTA ATA TAAATA TTTTTATTGAATAGT CPn0485 566038 - 566232 + | hypothetical protein TERM 572 566284 - 566245 - T 83 -5 -5.55001 | opp_overlap 566245, overlap 566249 566250 TAATAAAAAATAAAA CGAACCCCTCTTCTTCTT GGAA AAGAAGGAGAGGTATCAG ATTCTAAACACAACT TERM 573 566278 - 566249 - T 73 -7.3 -3.989 | gap 1, opp_overlap 566245, overlap 566245 566250 AAAAAATAAAACGAA CCCCT-CTTCTTCT TGG AAAAGAAGGAGAGG TATCAGATTCTAAAC CPn0486 567784 - 566402 - | putative proline permease TERM 574 567738 - 567722 - G 82 -2.3 -5.65496 | overlap 567725 CAGGAAAAATAAAAA TAATGAA AAA TTCATAA AATAAAGAACTCCAC TERM 575 567735 - 567725 - G 71 -4 -4.855 | overlap 567722 GAAAAATAAAAATAA TGAA AAA TTCA TAAAATAAAGAACTC CPn0487 569740 - 568109 - | hypothetical protein TERM 576 568432 - 568418 - G 84 -2.8 -5.626 | opp_overlap 568418 CATTCCAGAAAAAAA GCTC CATCCCT GAGC TTGCTGTCCTGAAAG TERM 577 569730 - 569718 - G 73 -9.1 -3.48153 | ATCAACAATTGATAA CGGAG GGA CTCCG AGCCGAACAAGGATC ycfF 570096 - 569764 - | HIT family hydrolase CPn0489 570965 - 570093 - | hypothetical protein TERM 578 570543 - 570532 - G 75 -2.2 -5.25772 | AAAGCACAAGAAAAA TCCG CATC CGAA TTAGTTTCTTCTTCC TERM 579 572439 - 572466 + G 74 -9.2 -3.32993 | gap 1, overlap 572440 TTTATTTTCCCGCTA C-TTCCCTTCAGC ATC GCTGAAGGGCATG TTCCTCTCTAACTAC TERM 580 572440 - 572464 + G 95 -12.9 -3.23045 | overlap 572439 TTATTTTCCCGCTAC TTCCCTTCAGC ATC GCTGAAGGGCA TGTTCCTCTCTAACT TERM 581 572520 - 572538 + G 78 -6 -4.85599 | CTATTTTCAGATTCC CTCTCC CACTTCT GGAGAG TTTTTCTCGAATCGA CPn0490 571279 - 573336 + | hypothetical protein CPn0491 574352 - 573333 - | hypothetical protein TERM 582 574094 - 574080 - G 75 -5.8 -4.64076 | AATCAAAGGAGAAAA CAAAAT GGT ATTTTG AGGTAACCATACCCC TERM 583 574576 - 574556 - H 77 -9.1 -3.16872 | opp_overlap 574556, overlap 574549 574555 AGCAAGAGTGAAAAG CTGTCTTCA TCG TAAAGACAG TGTATAGAGAAGAAA CPn0492 574652 - 574807 + | hypothetical protein CPn0493 575004 - 574852 - | hypothetical protein CPn0494 575364 - 575143 - | hypothetical protein aspC 575603 - 576796 + | L,L-diaminopimelate aminotransferase CPn0496 576793 - 577815 + | hypothetical protein CPn0497 578089 - 577817 - | hypothetical protein CPn0498 579035 - 578082 - | hypothetical protein TERM 584 578347 - 578333 - G 91 -8.6 -4.74539 | overlap 578338 AAGAACGGAATAAAA GTAAGG TGT CCTTAC GATTCGCAACCACAC CPn0499 580359 - 579202 - | hypothetical protein TERM 585 581979 - 581965 - g 70 -7.8 -3.61328 | overlap 581957 581966 ATGAACACGGGCAAA CCCAGC AGT GCTGGA TGGGGACCTACGGCA proS 580659 - 582365 + | prolyl-tRNA synthetase TERM 586 582583 - 582572 - g 75 -5.8 -4.66163 | AGTTGTACCTAAAAA CAGG GCAG CCTG TAGGGTCTAAAACTT TERM 587 583103 - 583070 - g 100 -13.3 -2.96274 | overlap 583065 583077 583096 TCCTGCAGAACTACA TCCGAAAGCTCCCCA CAAA TGAGGAACTTTCGAA AAAAGAAGAACACCT hrcA 582457 - 583653 + | heat-inducible transcription repressor TERM 588 584082 - 584068 - g 71 -8.6 -3.55801 | ACGAAGCGGTGCAAA CAGAAG AGA CTTCTG AAGTTCCTGAGGGGA grpE 583650 - 584204 + | HSP-70 cofactor TERM 589 585657 - 585642 - g 70 -7.6 -3.57462 | GAGGCCATCCTCAAA TCGAAG TCTC CTTCGA TATCGATGCAAACGG TERM 590 585733 - 585723 - g 75 -5.4 -4.84673 | GTAAAGAACAGAAAA TTCG TAT CGAA GCAAGCTCAGGACTT TERM 591 585954 - 585940 - g 70 -5.6 -4.29176 | overlap 585941 AGAGCGAATCGAAAA CGTGCG CAA CGCACT CAAAGATGACGCTCC dnaK 584234 - 586216 + | molecular chaperone DnaK TERM 592 586242 - 586271 + F 79 -9.3 -3.44146 | overlap 586243 586265 CAATTTAAGTTTCTC TATTCCCATCCTC ATAA GAGGATGGGAAAC TTCCTTATAAACAGA TERM 593 586243 - 586270 + F 86 -12.8 -2.66274 | overlap 586242 586265 AATTTAAGTTTCTCT ATTCCCATCCTC ATAA GAGGATGGGAAA CTTCCTTATAAACAG TERM 594 587435 - 587411 - g 70 -5.7 -4.3898 | opp_overlap 587411, overlap 587414 ATGACGTTTACAAAA TCAGGTCATCT TTC AGATTACCAGA TTTTCCGTAGCGTCA vacB 586487 - 588517 + | ribonuclease family protein TERM 595 588959 - 588947 - g 76 -7.7 -4.17048 | CTCTTTGGAAAACAA TAGGC AAC GCCTA AATACCCCAGCTCTC CPn0505 588519 - 589109 + | 3-methyladenine DNA glycosylase TERM 596 589215 - 589232 + G 70 -7.1 -3.78778 | TTATTCTCCTTCCTC TAGCAAT TACT ATTGCTA TTGTTACTATGATCA TERM 597 589253 - 589288 + G 74 -7.6 -3.92832 | opp_overlap 589252 589253 ACTATGATCATGAAC TTCCTAACCCAACCCT TCGT AGGCTTGGCTTCGGAA TTCTTTGAGAAATTT CPn0506 589172 - 589843 + | hypothetical protein CPn0507 589961 - 590125 + | hypothetical protein TERM 598 590287 - 590268 - g 78 -4.2 -5.13473 | AGTACAGCGAAAAAA GTCACAGG TTTA CCTAAGAC CCCTATTTTAAAATA CPn0508 590142 - 590303 + | hypothetical protein TERM 599 590383 - 590357 - g 79 -6.7 -4.59591 | opp_overlap 590357 AAGAAAAGATCAAAA TACATGTTTCC AATGA GCAAACATGTA TTCCTATTCATTTGG CPn0509 590335 - 590811 + | metalloenzyme TERM 600 590815 - 590791 - f 89 -3.5 -5.80364 | ATGTTAAGAAAAAAA CATGCTTTGCT AAC AGCTTAACATG CTCCATATTCTTTTA TERM 601 590960 - 590939 - g 86 -8.7 -4.32857 | TTCTTCAAAGATAAA GGAAGAGAG TATC CCCCCTTCC CCAGTGCTCCTACAA tlyC_2 590813 - 591976 + | CBS Domains (hemolysin homolog) rsbV_1 592141 - 592491 + | sigma regulatory factor TERM 602 593901 - 593911 + G 74 -6.8 -4.2461 | opp_overlap 593893 593900 GATTAAAGAAGAATC TCCG CTT CGGA TTTGTTGCTGGGGGT CPn0512 592553 - 594415 + | hypothetical protein TERM 603 595671 - 595642 - gf 71 -6.5 -4.10925 | opp_overlap 595642 ACATATGGGGGAAAA GGTTTTCCAGATG GCCT CATCTAAAGAACC TATTAAAATGGACGC CPn0513 594647 - 595756 + | hypothetical protein CPn0514 595729 - 596523 + | hypothetical protein ubiE 596471 - 597184 + | ubiquinone/menaquinone biosynthesis methyltransferase TERM 604 597203 - 597187 - T 84 -6.5 -5.06472 | opp_overlap 597186, overlap 597189 AGAGAAACAATAAAA CATGGAG GAT CTCCAAG CTTGGTCGCAAGGAG TERM 605 597201 - 597189 - T 78 -7.7 -4.12859 | opp_overlap 597186, overlap 597187 AGAAACAATAAAACA TGGAG GAT CTCCA AGCTTGGTCGCAAGG CPn0516 598814 - 597252 - | hypothetical protein TERM 606 598231 - 598214 - G 74 -10.5 -2.59431 | overlap 598210 CTGGTGTAGAATCCA CGGCAGC CTCA GCCGCCG CAGCCTCTGAAACCC CPn0517 599631 - 598792 - | hypothetical protein TERM 607 599137 - 599096 - G 74 -8 -3.922 | AAATCCCGAATCAAA CAGGCCCAATCCACCAAA GGCTCG TTCGGTGGCTCAGGGCTG AAATGCTCCATAAAT CPn0518 600803 - 599829 - | hypothetical protein dapF 601674 - 600901 - | diaminopimelate epimerase clpP_1 602218 - 601643 - | ATP-dependent Clp protease proteolytic subunit glyA 603797 - 602238 - | serine hydroxymethyltransferase TERM 608 603123 - 603106 - G 70 -5.5 -4.48987 | overlap 603109 TCTGCATAATCAAAA CACTCCG TATC CGGATTG ACATCATAGGGGAAG hemD 603987 - 604658 + | uroporphyrinogen-III synthase CPn0523 604723 - 605055 + | hypothetical protein CPn0524 605103 - 606182 + | hypothetical protein TERM 609 606976 - 606958 - g 74 -4.7 -4.89063 | TCATTGAAAAAGAAA TTTTTGA AAGCA TCAAAAA GATTAATGAAGAAGG CPn0525 606522 - 607286 + | hypothetical protein kpsF 608696 - 607707 - | GutQ/KpsF family sugar-P isomerase sucB_2 609904 - 608723 - | branched-chain alpha-keto acid dehydrogenase subunit E2 gltT 611162 - 609918 - | glutamate symport TERM 610 610667 - 610654 - G 70 -3.7 -4.76123 | AAACCATCAATAAAA CGCTC GACA GGGCG GCCACGTTCTCCAGA lpxK 612259 - 611162 - | tetraacyldisaccharide 4'-kinase TERM 611 611825 - 611798 - G 77 -8.4 -3.98762 | opp_overlap 611822, overlap 611799 AAGGAGAATACCAAA TTTCTCTGCAGC GCGT GCTGCAGAGATC CTCCGGTCCTTATGC TERM 612 611824 - 611799 - G 86 -11.9 -2.98173 | opp_overlap 611822, overlap 611798 AGGAGAATACCAAAT TTCTCTGCAGC GCGT GCTGCAGAGAT CCTCCGGTCCTTATG TERM 613 612412 - 612400 - R 70 -2 -5.27477 | AGCTTAATTAAAAAA TTGT GTTAA ACAA AAAACTAATATAATT spoU_1 613254 - 612457 - | rRNA methylase TERM 614 612749 - 612709 - G 100 -13.5 -3.61398 | gap 1, overlap 612710 TTCCTGCTTGAACAA CTCCTTCCCTTCCTCTCT TGAAAT AGAGAGGATGGGAA-GAG AAAAGACAGCTCCTA TERM 615 612750 - 612710 - G 93 -13.5 -2.76696 | gap 1, overlap 612709 TCCTGCTTGAACAAC TC-CTTCCCTTCCTCTCT TGAAAT AGAGAGGATGGGAAGAGA AAAGACAGCTCCTAA CPn0531 614069 - 613242 - | SAM dependent methyltransferase ribC 614674 - 614072 - | riboflavin synthase subunit alpha CPn0533 614930 - 615388 + | transcriptional regulator NrdR dksA 615413 - 615787 + | DnaK suppressor TERM 616 616039 - 616050 + G 70 -7.2 -3.8599 | overlap 616037 ATATTTGTGATTCTT GGCC TCCT GGCC TATCTTTTTTTTAAA lspA 615793 - 616299 + | lipoprotein signal peptidase TERM 617 616309 - 616293 - f 78 -2.3 -5.59564 | overlap 616306 ACAAACTGAAAAAAA GAGAT AATATAG ATCTC TTCAAGAGAAGCTAA dagA_1 616345 - 617694 + | D-Ala/Gly permease CPn0537 617833 - 618192 + | hypothetical protein CPn0538 618212 - 618514 + | hypothetical protein TERM 618 620250 - 620239 - g 71 -3 -4.98672 | opp_overlap 620239, overlap 620234 CTGAAAAAGATAAAA TTGT CATC ACAA ATTTAGGATTCAACC pmp_19 618705 - 621548 + | polymorphic membrane protein A family TERM 619 621624 - 621572 - f 76 -4.2 -5.06016 | opp_overlap 621585, overlap 621585 ACTATAGAAATAAAA GAAGACTTAAAAAGCGCGTGGTTA TCATT CAAACACGCGCTTTTTTATCCCTT GCCTAATTTATCCAT TERM 620 621611 - 621585 - f 93 -8.7 -4.77216 | opp_overlap 621585, overlap 621572 AAGAAGACTTAAAAA GCGCGTGGTTA TCATT CAAACACGCGC TTTTTTATCCCTTGC TERM 621 621585 - 621611 + F 90 -8 -5.31456 | opp_overlap 621585 621572 AAGAAGACTTAAAAA GCGCGTGGTT ATCATTC AAACACGCGC TTTTTTATCCCTTGC TERM 622 621707 - 621718 + G 75 -5.8 -4.7373 | opp_overlap 621699 CTATGAAGTGGCTAC CAGC TACA GCTG TTTTTGCTGCCGTAC TERM 623 623287 - 623262 - g 79 -6.9 -4.72272 | opp_overlap 623264 623267 CCGCTTTAGTAAAAA TAAGACCGGAA ATTA TTCCGCTCCTA TTACCAAAGCGGCTA pmp_20 621694 - 626865 + | polymorphic membrane protein B family CPn0541 627170 - 628006 + | solute binding protein TERM 624 628240 - 628256 + G 72 -6.5 -4.29304 | overlap 628241 ACCCATTCCATGATC GGTTGGG TTC CCCAACA TTTCTCTTATGATCC TERM 625 628241 - 628255 + G 74 -10 -3.16859 | overlap 628240 CCCATTCCATGATCG GTTGGG TTC CCCAAC ATTTCTCTTATGATC TERM 626 628620 - 628630 + G 81 -4 -5.36441 | opp_overlap 628620 CCATACGACGAATTA CTTT AAT AAAG TTTTTTATATGAACA CPn0542 628003 - 628740 + | ABC transporter ATPase TERM 627 629432 - 629446 + GT 70 -3.6 -4.89393 | CATCTCGGTCCTCTT GAATAT CTT ATGTTC TTTTTCTGGAATTTG obgE 630529 - 629522 - | GTPase ObgE CPn0543 628725 - 629606 + | metal transport protein TERM 628 629630 - 629670 + gT 71 -4 -4.87803 | overlap 629627 629632 GCGCTTTTGGAAGCT TTGGAGGCATTCTTCCTG TTCGT CAGGAAGAAGATCATCAA TTTTATTTAAAGCTA TERM 629 629759 - 629775 + gT 85 -8.7 -4.08767 | overlap 629751 TTCTAAGTCTTCTTC GGGAGAG TTT CTCTCTC TTTTGGAGACATCGA TERM 630 629876 - 629902 + gT 86 -8 -4.72272 | overlap 629877 AGCTCCTTCAATGAT TCCTGGAATGTC AGC GATAATCCAGGG TTTTTGATACAAACG TERM 631 629877 - 629901 + gT 79 -9.3 -3.43042 | overlap 629876 GCTCCTTCAATGATT CCTGGAATGTC AGC GATAATCCAGG GTTTTTGATACAAAC TERM 632 630594 - 630563 - TR 100 -8 -5.95539 | opp_overlap 630563 CTTCAAACAAAAAAA GCTCGATTTGATGC CTGA GCAAAAAACCGAGC TTTTTTAATGTTTCT TERM 633 630563 - 630594 + Tr 84 -5.8 -5.34055 | opp_overlap 630563 CTTCAAACAAAAAAA GCTCGATTTGATGC CTGA GCAAAAAACCGAGC TTTTTTAATGTTTCT rpmA 630884 - 630630 - | 50S ribosomal protein L27 rplU 631229 - 630909 - | 50S ribosomal protein L21 ispF 631661 - 632191 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase cysJ 633231 - 632188 - | sulfite reductase rpsJ 633569 - 633252 - | 30S ribosomal protein S10 fusA 635661 - 633577 - | elongation factor G TERM 634 634555 - 634574 + g 75 -8.6 -3.85698 | AAACTCATCTCTATC TGTACGCT CATT AGCGTGCA TTTCTAAAAGGCGAG TERM 635 635047 - 635064 + g 73 -2.7 -5.11112 | TGCACAACGCTCTTT GAGATCT TCAG AAATCTC TTTTTCTTCCCATTT rs7 636168 - 635695 - | 30S ribosomal protein S7 rpsL 636587 - 636216 - | 30S ribosomal protein S12 TERM 636 636436 - 636466 + g 91 -5.5 -5.67529 | gap 1, opp_overlap 636434 636445, overlap 636437 636445 CGCACCCAAGCAACT TTCCTTA-AAGCCG AGTT CGGCTTCTTAGGAG TTTTTGTTTTTACTT TERM 637 636492 - 636527 + g 70 -5.4 -4.57482 | TACTTGAAGGCAAAC TCCCCGCTTTTGTGGG CACT TCTGCAAAGCTGGGGA TTTCTTTCTAGCTAG CPn0553 637747 - 636809 - | hypothetical protein CPn0554 637854 - 638144 + | hypothetical protein TERM 638 638859 - 638844 - g 80 -9 -3.94634 | opp_overlap 638844 638846 TATGAGGGTAAAGAA GAGCAG CTTG CTGCTC TGTGTCTACGTCAAA tsp 638298 - 640244 + | tail-specific protease crpA 640912 - 640322 - | hypothetical protein TERM 639 640858 - 640875 + g 86 -11.3 -3.40163 | opp_overlap 640856 640854, overlap 640858 TGTTTAGCACAGACT CAGGAGC AGCT GCTCCTG TTCCTGTTCCTCCTA TERM 640 641092 - 641126 + r 87 -10.1 -3.91984 | opp_overlap 641095, overlap 641095 GCTTATAAAACAAAA AAACCGCTTTAGTAC GTAAG GTACTAAAGCGGTAC TTCTTTGAAAGCTAT TERM 641 641123 - 641095 - R 100 -16.2 -6.14618 | opp_overlap 641092 641095 TATAAAACAAAAAAA CCGCTTTAGTAC GTAAG GTACTAAAGCGG TACTTCTTTGAAAGC TERM 642 641095 - 641123 + r 100 -16.2 -3.02371 | opp_overlap 641095, overlap 641092 TATAAAACAAAAAAA CCGCTTTAGTAC GTAAG GTACTAAAGCGG TACTTCTTTGAAAGC TERM 643 641180 - 641137 - R 100 -17.7 -3.53811 | opp_overlap 641138 641139 641141 641148, overlap 641138 641148 GGTACTTCTTTGAAA GCTATCCTAAAGCAGAGCG GAATAT CGCTCTGCTTTAGGATAAT TCCTTAGAATTTAAT TERM 644 641179 - 641138 - R 100 -21.2 -2.72144 | opp_overlap 641138 641139 641141 641148, overlap 641137 641148 GTACTTCTTTGAAAG CTATCCTAAAGCAGAGCG GAATAT CGCTCTGCTTTAGGATAA TTCCTTAGAATTTAA TERM 645 641138 - 641179 + r 100 -19.7 -3.3907 | opp_overlap 641137 641138 641148, overlap 641139 641141 641148 GTACTTCTTTGAAAG CTATCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGATAA TTCCTTAGAATTTAA TERM 646 641139 - 641178 + r 100 -23.2 -2.6296 | opp_overlap 641138 641137 641148, overlap 641138 641141 641148 TACTTCTTTGAAAGC TATCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGATA ATTCCTTAGAATTTA TERM 647 641141 - 641176 + r 100 -21.4 -2.84841 | opp_overlap 641138 641137 641148, overlap 641139 641138 641148 CTTCTTTGAAAGCTA TCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGA TAATTCCTTAGAATT TERM 648 641148 - 641169 + r 95 -12.3 -3.64162 | opp_overlap 641148 641138 641137, overlap 641141 641139 641138 GAAAGCTATCCTAAA GCAGAGCGG AATA TCGCTCTGC TTTAGGATAATTCCT TERM 649 641169 - 641148 - R 90 -11.6 -3.62864 | opp_overlap 641141 641139 641138 641148, overlap 641138 641137 GAAAGCTATCCTAAA GCAGAGCG GAATAT CGCTCTGC TTTAGGATAATTCCT omcB 642861 - 641191 - | 60 kDa cysteine-rich OMP TERM 650 642992 - 642960 - R 75 -8.5 -3.36289 | TATTATCTGAATTAA GGTAGTCAGGAATTA ATT CATCTCCTAACTACC CGATCAATTTAAGTA omcA 643300 - 643028 - | 9 kDa-cysteine-rich lipoprotein CPn0559 643742 - 643930 + | hypothetical protein gltX 645612 - 644095 - | glutamyl-tRNA synthetase TERM 651 644160 - 644185 + g 73 -5.6 -4.42386 | gap 1 CCACAGTTGCAGCGA GCTTCTTAGGA ACGCC TCCTAA-AAGC TTTTCTGCATACACA TERM 652 645463 - 645494 + g 75 -7.4 -4.36595 | gap 1, overlap 645466 645486 ATCTTGGCGACTACG TGTTCTATCCGTATC TTC GATACGGA-GGATCA TTTTCCCTTTAAATC TERM 653 645748 - 645713 - R 100 -15.1 -5.29885 | opp_overlap 645717 AATCCAAAAATAAAA GAAACTCCTTAATTT AATAAA AAATTAAGGAGTTTC TCAAAAAAATCACGA TERM 654 645717 - 645744 + r 83 -10.1 -3.86015 | opp_overlap 645713 CAAAAATAAAAGAAA CTCCTTAATTT AATAAA AAATTAAGGAG TTTCTCAAAAAAATC euo 646404 - 645868 - | hypothetical protein TERM 655 646035 - 646055 + g 86 -11.9 -3.09635 | CTCCCTTACGCTCTC CTCGTATGG TTC CCGTACGAG TTGCATAGTAGACCT TERM 656 646884 - 646915 + r 76 -9.7 -2.83449 | opp_overlap 646888, overlap 646880 646888 TGCGATGAACCTTAG GAAACTCATTTTT GGTTTA AAAGATGAGTTTC TAATTATCGAAATGT CPn0562 648036 - 646915 - | CHLPS 43 kDa protein homolog_1 recJ 650056 - 648290 - | ssDNA exonuclease TERM 657 649186 - 649200 + g 81 -4.2 -5.31275 | overlap 649185 649187 TCAAGACAATATCTG TCGAAG TGA CTTCGC TTTTTTCTACTCCAC TERM 658 649187 - 649199 + g 72 -7.7 -3.78042 | overlap 649185 649186 CAAGACAATATCTGT CGAAG TGA CTTCG CTTTTTTCTACTCCA TERM 659 650073 - 650102 + r 77 -4.9 -5.1244 | opp_overlap 650067 650060 650072 650091, overlap 650074 650075 AATTTAATACCACAG GGGCCTTTGGGAC TAAA GTCCCAAAGGAGA TTTTTATATTGCTAC TERM 660 650074 - 650101 + r 73 -8.4 -3.6638 | opp_overlap 650067 650060 650072 650091, overlap 650073 650075 ATTTAATACCACAGG GGCCTTTGGGAC TAAA GTCCCAAAGGAG ATTTTTATATTGCTA TERM 661 650075 - 650100 + r 84 -11.9 -2.78743 | opp_overlap 650067 650060 650072 650091, overlap 650074 650073 TTTAATACCACAGGG GCCTTTGGGAC TAAA GTCCCAAAGGA GATTTTTATATTGCT secD/secF 654350 - 650142 - | bifunctional preprotein translocase subunit SecD/SecF TERM 662 651665 - 651649 - G 70 -9.5 -2.73875 | opp_overlap 651652, overlap 651652 TTTTTCCCAAGATCA GAAGAGA TCG TCTCTTC ACTGAGAACCTCGGG TERM 663 651692 - 651718 + g 75 -10.2 -2.87319 | opp_overlap 651690 651688 651692, overlap 651691 CGGGAACAAAAGACA TCGCTCCAGATT TTA AATCTGAGGCGA GTTTGCTCACTTCAC TERM 664 651718 - 651692 - G 80 -10.2 -3.55261 | opp_overlap 651692 651691, overlap 651690 651688 CGGGAACAAAAGACA TCGCTCCAGATT TTA AATCTGAGGCGA GTTTGCTCACTTCAC TERM 665 653340 - 653352 + g 81 -4.1 -5.26119 | opp_overlap 653351 TACTTGAACAGTTAA GTTCT TAG AGAGC TTTTGTTTTTCAACA TERM 666 653508 - 653493 - G 76 -2.6 -5.28481 | TATGGAACTAAAAAA TAATGA GGAC TCACTA CAATCTAATCGAAGC TERM 667 653737 - 653723 - G 80 -2.8 -5.4505 | GTCGCGAAGAAAAAA CCTCAA ATC CTGAAG AAAGGTTCTTGGCAT TERM 668 654420 - 654410 - R 93 -5.4 -6.09133 | overlap 654418 CAGTTGAAAAAAAAA TCGT CAA ACGA AGAGGAGCCCTCCAC CPn0565 655630 - 654530 - | hypothetical protein TERM 669 655231 - 655263 + g 79 -3.3 -5.40474 | overlap 655233 655236 AGATCTCTACTTGGG GACAGCCTGGATGAT AGT AGCATCCGGGTCGTA TTTTTTTCCAAGACT TERM 670 655233 - 655261 + g 70 -5.9 -4.34482 | overlap 655231 655236 ATCTCTACTTGGGGA CAGCCTGGATGAT AGT AGCATCCGGGTCG TATTTTTTTCCAAGA TERM 671 655739 - 655728 - H 82 -3 -5.59502 | opp_overlap 655728 655736, overlap 655736 CAAAAAATTAAAAAA CAAA AGAG TTTG TTTCAAAATTTTCAT TERM 672 656392 - 656377 - g 77 -6.2 -4.66537 | GTTTTCAACAGAAAA TTTTGG GAGA CCAAAA GAGGAAATTCAAGAA yaeS 656141 - 656893 + | hypothetical protein cdsA 656894 - 657820 + | phosphatidate cytidylytransferase cmk 657817 - 658467 + | cytidylate kinase plsC 658464 - 659102 + | glycerol-3-P acyltransferase TERM 673 659282 - 659272 - g 75 -2.4 -5.40072 | opp_overlap 659272 CGTGTTTTAAAAAAA GCTC CGA GGGC TATTGCTGAGGCCAT TERM 674 659748 - 659725 - g 71 -2.4 -5.09173 | gap 1, overlap 659713 659726 GAAGAGTTTAAAAAA CGCTCCCAACA GAA TGT-GGTAGCA TTACAGGCTAAGGAT argS 659107 - 660792 + | arginyl-tRNA synthetase murA 662122 - 660746 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 675 661084 - 661072 - G 91 -7.7 -4.75372 | AGCACTGATGAAAAA GCTGA CAC TCAGC TCCCATGTGCTGAAG TERM 676 663086 - 663059 - g 71 -2 -5.10516 | overlap 663061 663064 AAAAACCAAAGAAAA TATTACTAAGCC TGCG GACTTAGAAATG TGCATCGCTAAATTC CPn0572 662352 - 664619 + | hypothetical protein yebC 665404 - 664688 - | hypothetical protein CPn0574 665945 - 665391 - | hypothetical protein yhhY 666494 - 665979 - | amino group Acetyl transferase prfB 667598 - 666491 - | peptide chain release factor 2 TERM 677 667306 - 667292 - G 75 -7.2 -4.36914 | opp_overlap 667281 TTTCTTCTCACAAAA GAGAAA TTC TTTCTC TAAGTCTTCACAAAT TERM 678 667708 - 667732 + H 72 -5.8 -4.31697 | overlap 667706 AAACAAAAACCAAGA CTTTTTCTTC TTTTT GGAGAGAAAG TTCTTTGTTATATCT TERM 679 667877 - 667843 - H 76 -2.8 -5.4251 | opp_overlap 667843, overlap 667845 CTGAGAGATAAAAAA GTTGGGATGAAGAG CTCAGGT CTCTTCTTACCACC TTTACTAGGAGTCAC TERM 680 667925 - 667909 - g 87 -4.5 -5.49729 | AATGAGTCAAAAAAA TAAAAAC TCT GCTTTTA TGCATCCCGTGAATA CPn0577 667895 - 668158 + | SWIB (YM74) complex protein TERM 681 668242 - 668223 - f 78 -10.6 -2.74563 | CTGATATGTTAAGTA CCCTGCCC TTTA GGGCGGGG ATATAAAGTGATCTT TERM 682 668535 - 668520 - g 82 -4.7 -5.40474 | opp_overlap 668522 AGGCTTCCAAAAAAA CATGC GCATTT GCATG GTCTTCGCATCGCTC TERM 683 668835 - 668821 - g 71 -2.1 -5.14563 | TCCCTGAGGAAAAAA GTCGT CCTAT ACAAC GCGCCATCATTGCTG yaeI 668406 - 669368 + | phosphohydrolase TERM 684 669876 - 669865 - g 78 -2.2 -5.45802 | CTTGCAAAAGAAAAA CAGC TCAC ACTG GTAGACGACATCGAA ispD 669361 - 669996 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 685 670368 - 670378 + GT 74 -6.8 -4.27117 | GCCAAACCTCTTCCC TGGC AGC GCCA TTTCTGTTATACCCC CPn0581 671434 - 670742 - | phosphoglycolate phosphatase truA 669993 - 670796 + | tRNA pseudouridine synthase A CPn0582 671503 - 672180 + | hypothetical protein CPn0583 672400 - 672720 + | hypothetical protein TERM 686 673054 - 673040 - g 81 -4.2 -5.33026 | GAATCTAAAGAAAAA GAAGTG GAA CTCTTC ATCCGTAAAAACGAG atoS 672707 - 673801 + | two component sensor protein TERM 687 673846 - 673856 + T 77 -5.4 -4.84492 | opp_overlap 673846 AGGGTTCTCAAAGAT CATC TAC GATG TTTTCTTATCCTTGA CPn0585 675817 - 673862 - | hypothetical protein TERM 688 676548 - 676565 + G 81 -5.5 -5.24129 | opp_overlap 676554 GGAGAATCGGGATGC GGAAAGG AAGT CCTCTCC TTTTTTATCCACCAC atoC 676026 - 677186 + | two component regulator TERM 689 677188 - 677199 + F 79 -3.6 -5.51353 | TCGCTTTAGCTTGAT CTCC TCTA GGGG TTTTTCTTGTTTTTC TERM 690 677973 - 677953 - gf 71 -3.4 -5.07486 | gap 1, opp_overlap 677958, overlap 677958 GATCTCCAAGAAAAA GATGAGCAT TCGT ATGCT-ATC TCAAGACGAGGCTAT yvyD 677441 - 678127 + | hypothetical protein TERM 691 678193 - 678170 - gf 93 -10.4 -3.9712 | gap 1, opp_overlap 678158 CGATCCCATTAGAAA TCGGGAGTTAG TTT CTA-CTCCCGA AGAAAAAGTCCGCCA CPn0588 678084 - 678629 + | hypothetical protein recO 678640 - 679398 + | DNA repair protein RecO TERM 692 679451 - 679472 + T 72 -5.9 -4.28361 | opp_overlap 679455 AAGGTACCGCTGCAC CAAACCTTT GAAA AAAGGTGTG TTTTCCTAGAATTCA CPn0590 680112 - 679513 - | hypothetical protein TERM 693 680849 - 680833 - g 71 -3 -5.01811 | overlap 680826 CTACTAAAGGAAAAA TTTCCA TGTCT CGGAAA GCCATCGCAAAAAAG yagE 680373 - 681023 + | YagE family protein CPn0593 682476 - 681388 - | hypothetical protein yidD 681153 - 681464 + | YidD family protein TERM 694 683011 - 682995 - g 77 -10.9 -2.84732 | overlap 682997 TCCAAATTCAGGAGA GAGCTCT TTT AGAGCTC CCAGAAGCCACCCCT TERM 695 684170 - 684155 - g 90 -4 -5.64321 | ACAAGAAAAGAAAAA GAAGAA ATCT CTCTTC AGGGCTCCAAACATA pheT 682583 - 684961 + | phenylalanyl-tRNA synthetase subunit beta TERM 696 685431 - 685417 - g 71 -8.6 -3.50393 | opp_overlap 685417 GGGCATGTCATAGAA GGAAGT TAT ACTTCC TTTAATGGGAAATAC TERM 697 685417 - 685431 + G 73 -8.6 -3.73224 | opp_overlap 685417 GGGCATGTCATAGAA GGAAGT TAT ACTTCC TTTAATGGGAAATAC CPn0595 684958 - 685929 + | hypothetical protein ada 685939 - 686460 + | methyltransferase oppC_2 688215 - 686476 - | oligopeptide permease TERM 698 687554 - 687571 + g 71 -4.1 -4.84527 | overlap 687540 CTTTGCTGTAATCTT TTAAGGC AAAT GCCTTCA TTTTTCATCTCTAAG oppB_2 689697 - 688216 - | oligopeptide permease oppA_5 691802 - 689679 - | oligopeptide binding lipoprotein TERM 699 691581 - 691564 - G 72 -6.3 -4.38774 | gap 1 AAGAGTAGAGCAAAA GCTTCGTC TCT GACGA-GC TTAGGAGCGAGCATC CPn0600 692147 - 691824 - | hypothetical protein TERM 700 692324 - 692356 + r 78 -7.9 -4.09685 | gap 1, opp_overlap 692324 692332, overlap 692332 CTCATGGGGGAAAAA GACAAAT-AGAGGG CTTTCA CCCTCTTGTTTGTC TTTTAAAAACTAAAA TERM 701 692356 - 692324 - R 76 -6.4 -4.58395 | gap 1, opp_overlap 692324 692332, overlap 692332 CTCATGGGGGAAAAA GACAAA-TAGAGGGC TTTC ACCCTCTTGTTTGTC TTTTAAAAACTAAAA TERM 702 692332 - 692347 + r 72 -6.1 -4.32763 | opp_overlap 692332 692324, overlap 692324 GGAAAAAGACAAATA GAGGG CTTTCA CCCTC TTGTTTGTCTTTTAA TERM 703 692522 - 692512 - R 71 -6.8 -4.18494 | overlap 692518 GATTCGTATCCAAAA GCAG AAC CTGC AACAGGAAGCACAAG CPn0601 693053 - 692733 - | hypothetical protein CPn0602 694105 - 693101 - | hypothetical protein TERM 704 693142 - 693159 + g 100 -4.2 -6.08563 | ATTTAATAAGTTTTT GAGATT TTTTAT AATCTC TTTTTTTTATCTCTT TERM 705 693635 - 693622 - G 75 -5.3 -4.76644 | AACATTCACGAAAAA GAAAG TAAT CTTTC CAAAAACAAAAACAA TERM 706 693869 - 693849 - G 87 -4.7 -5.42862 | overlap 693852 693853 AGATCCTCAAAAAAA TCACCTTTC CCC GAAAGAAGA TAGAGCCGTGTGACA TERM 707 694209 - 694199 - H 71 -5.4 -4.49556 | TTTTTAGCAAAGAAA GTCA CCG TGAC AACTCCAGCCTATCT hemH 694205 - 695188 + | ferrochelatase fliY 695945 - 695193 - | glutamine binding protein TERM 708 695847 - 695857 + g 73 -5.4 -4.72272 | GGCATCACGACCTAC GAGA ACT TCTC TTTTTACTCGAGAGC yhhF 696707 - 696147 - | methylase CPn0606 697444 - 696704 - | hypothetical protein TERM 709 697301 - 697287 - G 73 -8.6 -3.69469 | overlap 697285 ATAGCCCAAGAAATA TCTCCT GGG AGGAGA ACAATATCCTCTGGA glgC 698895 - 697570 - | glucose-1-P adenyltransferase TERM 710 698695 - 698685 - G 73 -2.6 -5.20333 | overlap 698679 GACCTATAACAAAAA TTTT TGA AAAA CCTGCACTAATTGCA TERM 711 698860 - 698849 - G 71 -4.4 -4.84359 | overlap 698850 698852 698854 TTATCTCGATAAAAA TGAG AGCT CTCA AAATTTGAGGCCTCC TERM 712 699004 - 699032 + r 80 -9.1 -3.61219 | opp_overlap 699003 699002 TTTTTAATAAATATG TTCTAGAAATTAA GAT TCAATTTCTAGAA TTTCGGAAATTTTGT CPn0608 699645 - 699013 - | uridine 5'-monophosphate synthase CPn0609 699705 - 699989 + | hypothetical protein rho 701420 - 700026 - | transcription termination factor Rho coaE 702025 - 701417 - | dephospho-CoA kinase polA 704631 - 702019 - | DNA polymerase I TERM 713 704123 - 704109 - G 71 -10 -2.70994 | overlap 704108 704111 CTAACGCTAGATAAT CAGGGA TAT TCCCTG GAGGAATCCCATAAC sohB 705656 - 704655 - | protease adt_2 707402 - 705780 - | ADP/ATP translocase TERM 714 707141 - 707123 - G 100 -13.2 -5.5604 | TGAAGCAATAAAAAA CGGTATCC CGA GGATACCG ACTGCCTAACCACCC pgsA_1 708137 - 707631 - | glycerol-3-P phosphatidyltransferase dnaB 708791 - 710140 + | replicative DNA helicase TERM 715 710314 - 710297 - f 80 -7.1 -4.56597 | GTTCCGCCGGAAAAA TTCAAAC TTCG GTTTGAA TATGAAGAATCTTCG TERM 716 710345 - 710324 - f 70 -7.3 -3.82084 | opp_overlap 710317, overlap 710325 TTTGAATATGAAGAA TCTTCGTCA CTTA TGACGAAGG GGATGTCAAATCGAT TERM 717 710344 - 710325 - f 81 -10.8 -2.88768 | opp_overlap 710317, overlap 710324 TTGAATATGAAGAAT CTTCGTCA CTTA TGACGAAG GGGATGTCAAATCGA gidA 710484 - 712319 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA lplA_2 712306 - 713013 + | lipoate-protein ligase A ndk 713444 - 713010 - | nucleoside diphosphate kinase ruvA 714139 - 713516 - | Holliday junction DNA helicase motor protein ruvC 714647 - 714141 - | Holliday junction resolvase CPn0622 715752 - 714790 - | hypothetical protein TERM 718 716148 - 716113 - R 82 -8.5 -4.05875 | opp_overlap 716113 TTCAAAAAAGGGAAA GGTATGCCTTAAGTT AAAGTG AACTTAAACCATACC TTTAAAAATAGCTAT TERM 719 716165 - 716185 + r 73 -8.3 -3.53012 | overlap 716167 TTAAAAATAGCTATT CTTCTTCTG TAG CAGAAGATG TTTCGGGGAAGAACA TERM 720 716167 - 716183 + r 79 -9.5 -3.34398 | overlap 716165 AAAAATAGCTATTCT TCTTCTG TAG CAGAAGA TGTTTCGGGGAAGAA CPn0623 716993 - 716160 - | hypothetical protein gapA 718015 - 717008 - | glyceraldehyde-3-phosphate dehydrogenase TERM 721 717688 - 717709 + g 95 -5.9 -5.60993 | opp_overlap 717693 GTTTCGCTCCAGCTT GAATATGCT TCTC AGCATCTTC TTTTTTTGTGAACAA rplQ 718485 - 718057 - | 50S ribosomal protein L17 rpoA 719616 - 718492 - | DNA-directed RNA polymerase subunit alpha TERM 722 718628 - 718638 + g 70 -5.4 -4.42464 | AATTTATTCTTGATC TCAC ACA GTGA TTTCTTTCCAAAATT rs11 720038 - 719637 - | 30S ribosomal protein S11 rpsM 720428 - 720060 - | 30S ribosomal protein S13 secY 721857 - 720484 - | preprotein translocase subunit SecY rplO 722316 - 721882 - | 50S ribosomal protein L15 rpsE 722806 - 722309 - | 30S ribosomal protein S5 rplR 723195 - 722824 - | 50S ribosomal protein L18 rplF 723757 - 723206 - | 50S ribosomal protein L6 rpsH 724185 - 723784 - | 30S ribosomal protein S8 TERM 723 724015 - 723997 - G 73 -5.2 -4.66953 | opp_overlap 723999 724001, overlap 723999 GGAATATTGTAAAAA CACACGCA TAG CGCGTTTG CGGTTTTCTTCCTTT rplE 724745 - 724203 - | 50S ribosomal protein L5 TERM 724 724414 - 724398 - G 73 -5.8 -4.46212 | overlap 724400 TCCTTTATTAGAAAA TCCGCG GAAGT CGCGAA TCCGTGGAGAAACAA rplX 725082 - 724747 - | 50S ribosomal protein L24 rplN 725464 - 725096 - | 50S ribosomal protein L14 rpsQ 725747 - 725487 - | 30S ribosomal protein S17 rpmC 725958 - 725740 - | 50S ribosomal protein L29 rplP 726377 - 725961 - | 50S ribosomal protein L16 rpsC 727077 - 726406 - | 30S ribosomal protein S3 TERM 725 726798 - 726810 + g 74 -7.7 -3.9122 | CTTCTTTTCCGGTAA GAGCT CTG AGCTC TTCTTTAAGCAGATC TERM 726 726926 - 726939 + g 85 -2.4 -5.7946 | ACAAATCCAGCGGCA CCTT GACATG AAGG TTTTTTTCTTAAAAA rplV 727428 - 727093 - | 50S ribosomal protein L22 rpsS 727713 - 727447 - | 30S ribosomal protein S19 rplB 728573 - 727719 - | 50S ribosomal protein L2 rplW 728930 - 728595 - | 50S ribosomal protein L23 rplD 729621 - 728947 - | 50S ribosomal protein L4 TERM 727 729413 - 729429 + g 86 -3 -5.626 | CGGGCATTACCCGTA CCTTTT TGTTT GAAAGG TTTTTTTGTAGAATG rplC 730313 - 729654 - | 50S ribosomal protein L3 TERM 728 730422 - 730412 - R 82 -5.4 -5.26119 | overlap 730407 730417 TCTCTAAAAAGAAAA GGAA ATT TTCC CTTAAGAAAATAAAG TERM 729 730546 - 730575 + r 100 -12.3 -3.9392 | opp_overlap 730546 730561 TTATAGAAATAGAAA GTCGCTTCCAAAA AATT TTTTAGAAGCGAC TTCTTTAAAATAAAG TERM 730 730575 - 730546 - R 100 -14.5 -4.43283 | opp_overlap 730546, overlap 730561 TTATAGAAATAGAAA GTCGCTTCCAAAA AATT TTTTAGAAGCGAC TTCTTTAAAATAAAG CPn0648 731603 - 730602 - | hypothetical protein TERM 731 731166 - 731176 + g 82 -2.4 -5.59962 | opp_overlap 731166 TAGCATTTTACTATA CTCC CCA GGCG TTTTTCTTTCTTTTG TERM 732 731294 - 731308 + g 71 -5 -4.62336 | opp_overlap 731294 CATTAGCTAAGGCAA CAACTT CTC GAGTTG TTTTTAACATACCCT fmt 732672 - 731707 - | methionyl-tRNA formyltransferase lpxA 733501 - 732662 - | UDP-N-acetylglucosamine acyltransferase fabZ 733975 - 733514 - | (3R)-hydroxymyristoyl-ACP dehydratase lpxC 734835 - 733987 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 733 734516 - 734528 + g 78 -9.1 -3.83998 | ACATTTGAGCTTCCA TCCCC TAT GGGGA TTTCCTCTCCACTAC lnt 736490 - 734865 - | apolipoprotein N-acyltransferase TERM 734 735218 - 735236 + g 72 -9.6 -3.18832 | opp_overlap 735218 735221, overlap 735216 735221 CATTTGTTAAGTTAA CAAGGAGT TCG GCTCCTTG TCTCTTGTAGGATTG TERM 735 735455 - 735437 - G 71 -8.9 -3.37796 | opp_overlap 735445 CGCCACCAGGCACAA GGATACG CTTAT CGTATCC TACGGAAATTCCTTT TERM 736 736310 - 736285 - G 73 -2.5 -5.11063 | AGCATCCAAGAAAAA TGAATCCCCTC TATT GTGAAGATCCA GAAAAAACAGGATAC yciA 736967 - 736500 - | acyl-CoA thioesterase TERM 737 737028 - 737054 + r 93 -14 -2.57092 | opp_overlap 737033, overlap 737033 ATAGTATCGGTCAAC TGAAAGAAAATC TAT GATTTTCTTTCA TAAGTTACTGAAATT TERM 738 737033 - 737049 + r 75 -8.1 -3.80114 | opp_overlap 737033, overlap 737028 ATCGGTCAACTGAAA GAAAATC TAT GATTTTC TTTCATAAGTTACTG TERM 739 737049 - 737033 - R 75 -8.1 -3.75332 | opp_overlap 737028 737033 ATCGGTCAACTGAAA GAAAATC TAT GATTTTC TTTCATAAGTTACTG dnaQ_2 737847 - 737098 - | DNA polymerase III subunit epsilon TERM 740 737882 - 737901 + G 75 -7.2 -4.28488 | overlap 737878 TATCTTTGTTTGATA TCCTTCTG ACTG TAGAAGGA TTTCTGTGTTTAACT CPn0656 737872 - 738051 + | hypothetical protein yjeE 738473 - 738048 - | hypothetical protein CPn0658 739168 - 738452 - | hypothetical protein TERM 741 738910 - 738920 + g 70 -5.4 -4.57516 | opp_overlap 738908 738910 ATGGGCAAATATAGA TACG CTT CGTA TTTTCGTTTACCTGT trxA 739533 - 739841 + | thioredoxin TERM 742 739862 - 739888 + T 71 -5.2 -4.4715 | opp_overlap 739862 CGCTGCAATATTAAA CCGTAGGATT CTTTTGC AATGCTACGG TTTTCTGCCTTACCA spoU_2 740327 - 739857 - | rRNA methylase TERM 743 739959 - 739980 + g 70 -2.9 -5.02201 | AGAACGGATGTCTTG TTGCATGGG AATG CGCAGGCAA TTTTTATAATATTTT TERM 744 740261 - 740223 - G 100 -14.7 -4.87133 | gap 2 ATCGGCTAAAGAAAA GCCCAAGG-GCCGAAC-CA AAA TGAGTTCGGCGCCTAGGGC TACACAAGTTCTACC mip 741100 - 740324 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 745 740739 - 740749 + g 74 -4 -4.99665 | AATTTTTCTGCCAAT GAAA GAT TTTC TTTTGATTTTTTTTC aspS 742923 - 741169 - | aspartyl-tRNA synthetase TERM 746 741282 - 741268 - GR 70 -7.1 -3.72576 | CTGTGTTTTAGGAAA CGCGA TGACC TCGCG AATGCTCTCTGCTGC hisS 744190 - 742898 - | histidyl-tRNA synthetase TERM 747 744176 - 744166 - GR 73 -8.2 -3.56811 | overlap 744160 GAAATATATCAAAGA CCCC TTT GGGG AGAGTTACAGTCACG CPn0664 744757 - 744554 - | hypothetical protein TERM 748 745100 - 745079 - g 91 -6.7 -5.4505 | opp_overlap 745079 GTGGTCAAGAAAAAA TACAAATAC TGGC GTATTCGTA TTTTCTATAGCATGT TERM 749 745689 - 745672 - g 80 -9.9 -3.60094 | TATAGAGAAGTACAA GCGTGAT CCCC ATCACGC ACATCACGAGGGCAA uhpC 745001 - 746368 + | hexosphosphate transport TERM 750 749807 - 749791 - g 73 -3.7 -5.03715 | ATCAGGTGCAAAAAA TGTCATT TAC AATGTCA ACCTCTGGCAAAGAA dnaE 746388 - 750110 + | DNA polymerase III subunit alpha CPn0667 751058 - 750174 - | hypothetical protein TERM 751 752065 - 752055 - g 82 -2.4 -5.68489 | GAGAAGAAGAAAAAA GCCG AGG CTGC GAATATCTATTACCG CPn0668 751209 - 752165 + | hypothetical protein CPn0669 752179 - 752778 + | hypothetical protein rsbW 752765 - 753199 + | sigma regulatory factor-histidine kinase CPn0671 753630 - 753202 - | hypothetical protein TERM 752 754809 - 754842 + G 84 -5.3 -5.252 | CATGCGGACGCCTTC CCTATTGAACAAGGA GATC TTCTTGGTCATTGGG TTTTTTATGACGATG dacF 753741 - 755051 + | D-Ala-D-Ala carboxypeptidase CPn0673 755287 - 755466 + | hypothetical protein TERM 753 755552 - 755567 + T 83 -10.4 -3.22076 | opp_overlap 755549 755546, overlap 755551 755549 CTTTTGAAAGATTCG GGCGCT CTAC AGCGCC TCTATTCTAGATTTT TERM 754 755568 - 755578 + T 73 -4 -5.03314 | opp_overlap 755549 755546, overlap 755551 755549 GCGCTCTACAGCGCC TCTA TTC TAGA TTTTTTGAAAATGAG fmu 756668 - 755574 - | RNA methyltransferase TERM 755 755606 - 755635 + g 74 -4.2 -4.98522 | opp_overlap 755606 GAGAAGTAAAAAATG CGTCGCCCTTAC CTACTT GTAAGGGAAGCG TTTTTCTGTGGACTT TERM 756 756200 - 756236 + g 100 -13.9 -3.90922 | opp_overlap 756197 ATGCCTCAGGAAGCT CTCCAGGAGAACTTGGA TAT TCTAACTTCTCTTGGAG TTCTTTGACGGAGAT CPn0675 757919 - 756765 - | hypothetical protein TERM 757 756910 - 756924 + g 70 -5.6 -4.35116 | ATGGTAATCATTTTA TCCCAC AGG GCGGGA TTTTGGTCTCGAATA TERM 758 757233 - 757223 - G 100 -6.8 -5.65927 | opp_overlap 757232 CACTCAAAGAAAAAA GCTG GAT CAGC TCGCGTAACAATACG CPn0676 759217 - 758048 - | hypothetical protein TERM 759 758788 - 758774 - G 86 -5.7 -5.35815 | TACATGAAAGAAAAA GCTTC GGCAT GAAGC TAGTGCTGTTTCTAA CPn0677 760401 - 759253 - | hypothetical protein TERM 760 760040 - 760056 + g 75 -8.7 -3.6215 | GACCCCGCCGTAGGA GGTTGAG GTG CTCGACC TTTCCCATGCGTTGC CPn0678 761320 - 760679 - | hypothetical protein TERM 761 761472 - 761449 - R 83 -4.7 -5.47159 | TTCTAAGAGAAAAAA GACGTTTTT ATAATA AAAAACATC TAAAGTTCAGGGAGT TERM 762 761487 - 761515 + r 86 -10.3 -3.55444 | CTAAAGTTCAGGGAG TTATCTCCAGAGG AGT CCTCTGGTGAAAA TTTGAAAAATCGGAA pgk 762930 - 761722 - | phosphoglycerate kinase ygo4 764248 - 762968 - | phosphate permease TERM 763 763514 - 763525 + g 82 -2.2 -5.60864 | TTCTTTCAAACGATA GGTA AGAC TGCC TTTTTTTGGTGTATC CPn0681 764929 - 764255 - | hypothetical protein dppD 764984 - 765958 + | peptide ABC transporter ATPase TERM 764 766303 - 766291 - g 77 -6.3 -4.60924 | opp_overlap 766291, overlap 766295 TAAACCCGCGAAAAA CTATC CTA GATAG TTTAGGCCACTCTCT TERM 765 766861 - 766851 - g 75 -5.4 -4.82901 | CGTTGTCCACAAAAA CAAG AAG CTTG CAAGTCAGAGATCAT dppF_2 765948 - 766922 + | peptide ABC transporter ATPase TERM 766 767059 - 767088 + T 71 -7.9 -3.55444 | opp_overlap 767062, overlap 767062 TGTAAATACAAAACA AAAGCCATTCCAT ATCC ATGGAATGGCTAC TTTAAGACCTAACGC TERM 767 767085 - 767062 - T 100 -14 -5.2894 | opp_overlap 767062 767059 AAATACAAAACAAAA GCCATTCCAT ATCC ATGGAATGGC TACTTTAAGACCTAA TERM 768 767062 - 767085 + T 93 -14 -2.91144 | opp_overlap 767062, overlap 767059 AAATACAAAACAAAA GCCATTCCAT ATCC ATGGAATGGC TACTTTAAGACCTAA parB 768038 - 767178 - | chromosome partitioning protein CPn0685 768068 - 768220 + | hypothetical protein CPn0686 768361 - 768173 - | hypothetical protein TERM 769 768819 - 768830 + G 78 -5.8 -4.7629 | opp_overlap 768818 768819 GGAGAATCCATGAAG CCCT ATGC AGGG TTTTTAGCTTCGTGC CPn0687 768564 - 769217 + | hypothetical protein CPn0688 769382 - 770140 + | hypothetical protein yfhO_1 771404 - 770184 - | NifS-related aminotransferase TERM 770 770681 - 770693 + g 84 -6.3 -5.07567 | CTACTGGAGGCAACT GATCT AAT AGATC TTTTTTCCCATATAA CPn0690 772680 - 771433 - | ABC transporter membrane protein abcX 773452 - 772682 - | ABC transporter ATPase CPn0692 774912 - 773458 - | cysteine desulfurase activator complex subunit SufB TERM 771 774310 - 774283 - G 73 -8.6 -3.70019 | gap 1, opp_overlap 774283, overlap 774281 774291 ATTAATCCGAAAATA GGTAGAAATATCC ATA GGACATTTC-ACC CCTTTAGGAACATAA TERM 772 774880 - 774860 - G 74 -6.1 -4.44245 | opp_overlap 774860 774861, overlap 774861 ATAGGAGTCACAAAA CCGTAAGGA TAG TCCTCACGC TCTTCTAAAAAAACC TERM 773 774879 - 774861 - G 74 -9.6 -3.25824 | opp_overlap 774860 774861, overlap 774860 TAGGAGTCACAAAAC CGTAAGGA TAG TCCTCACG CTCTTCTAAAAAAAC TERM 774 775047 - 775016 - R 93 -9.5 -4.29119 | CAGTATAACAAAGAA GGCTTGAAAGACG AACCTA CCCCTTTCAAGCC CAGAAGAAAAGAGAA CPn0693 776256 - 775237 - | hypothetical protein pbp2 779599 - 776327 - | PBP2-transglycolase/transpeptidase TERM 775 777152 - 777140 - G 70 -2.6 -5.03314 | GCCATCTTTAAAAAA GCCC ACGTG AGGC TTAGAACTCCTATAG TERM 776 777642 - 777657 + g 77 -6.2 -4.7033 | opp_overlap 777642 AGAAATGTATCCAAA TGTTCT TGGC AGAACA TTTTATATTGCCTTG TERM 777 778577 - 778541 - G 77 -10.9 -2.83788 | opp_overlap 778542 778570, overlap 778540 ATCTAACGCAATAAT GGCTCCTCCTTTAATCC AAG GGAACAAAGGAGGAAGC TTCTCTCGTTTCTTC TERM 778 778542 - 778577 + g 80 -9.8 -3.68504 | gap 1, opp_overlap 778541 778540, overlap 778570 TCTAACGCAATAATG GCT-CCTCCTTTAATCC AAG GGAACAAAGGAGGAAGC TTCTCTCGTTTCTTC TERM 779 779185 - 779218 + g 77 -10.5 -3.16564 | gap 1, opp_overlap 779185, overlap 779177 AAGCTTTTGCATGAA TTGCATCTTCGATCGC CTC GCGATCTAA-ATGCAA TTCCTGAGATAAAAG TERM 780 779218 - 779185 - G 77 -10.5 -3.14463 | gap 1, opp_overlap 779177 779185 AAGCTTTTGCATGAA TTGCATCTTCGATCGC CTC GCGATCTAA-ATGCAA TTCCTGAGATAAAAG TERM 781 779857 - 779844 - H 95 -3.9 -6.32017 | overlap 779845 AATAAACAAAAAAAA TTTCT CAAG AGAAA AAGACTTGAGAAGGT TERM 782 779953 - 779935 - H 93 -7.5 -5.48787 | overlap 779926 AGAATATACAAAAAA GCTATAG CTTTC CTATAGC TCATAACAGAAGTTC TERM 783 780270 - 780300 + G 74 -10.4 -2.64218 | overlap 780269 TTTGCTGGTTCTGTT GGCTCCTTACAAGC CTT GCCTGTAGGGAACC CTTCTGATCCAAGCT ompA 780216 - 781385 + | major Outer membrane protein TERM 784 781418 - 781442 + F 85 -9.4 -3.96327 | overlap 781436 CTCCTCACCTTGTTA TCAGAGTCTA CATGT TAGGCTCTGA TTTATGCTCAGAGCT TERM 785 781436 - 781456 + F 73 -6.9 -3.93401 | overlap 781418 781446 781447 GAGTCTACATGTTAG GCTCTGA TTTATGC TCAGAGC TTCTTAATTTCTGAG TERM 786 781446 - 781474 + F 79 -5.3 -5.06414 | overlap 781436 781447 GTTAGGCTCTGATTT ATGCTCAGAGCTT CTT AATTTCTGAGCAA TTTTTATTCCCCCCC TERM 787 781447 - 781473 + F 77 -8.8 -3.63367 | overlap 781436 781446 TTAGGCTCTGATTTA TGCTCAGAGCTT CTT AATTTCTGAGCA ATTTTTATTCCCCCC rpsB 781769 - 782602 + | 30S ribosomal protein S2 TERM 788 783245 - 783232 - g 75 -2.4 -5.27938 | ATTGCTAAAGAAAAA GAAG TGATTG CTTC TCAAATTCAAGGAAA tsf 782602 - 783450 + | elongation factor Ts TERM 789 784013 - 784023 + G 78 -5.4 -5.02074 | AAATATGATTTTGTT TCCT ATA AGGA TTTTTTGAGCAATCA pyrH 783458 - 784204 + | uridylate kinase frr 784182 - 784724 + | ribosome recycling factor TERM 790 784717 - 784701 - f 84 -6.6 -5.09521 | opp_overlap 784704, overlap 784706 TTAACAAAGCAAAAA GAAGCT GAAAT AGCTTC AATATAAGTATACTT CPn0700 785097 - 785612 + | hypothetical protein karG 785599 - 786675 + | ATP:guanido phosphotransferase TERM 791 786853 - 786808 - T 87 -6.4 -5.4833 | GTAGGGAACAAAAAA GCCAAGAAAACATAAAGT TATACGGCCG ACTCTACATCTTCTTGGC TTTCCCCCTGAATGC yscC 789685 - 786926 - | Yop proteins translocation protein C/general secretion pathway protein CPn0703 791190 - 789682 - | S/T protein kinase fliN 792321 - 791206 - | type III secretion system protein TERM 792 792035 - 792055 + g 76 -6.9 -4.5442 | overlap 792024 TCCTGAAGGTCTTCT TCTGATGTT AGG AACAACAGA TTTTCTACTTCCCAA TERM 793 792248 - 792223 - G 93 -11.9 -3.72893 | opp_overlap 792223 CAGTTCCTTAGGAAA CTCAGGAGCAG CAAC CTGCTCCTCAG TCTTCCCTAGGGAAC TERM 794 792223 - 792248 + g 86 -11.9 -3.08679 | opp_overlap 792223 CAGTTCCTTAGGAAA CTCAGGAGCAG CAAC CTGCTCCTCAG TCTTCCCTAGGGAAC CPn0705 793173 - 792331 - | hypothetical protein CPn0706 793683 - 793177 - | hypothetical protein TERM 795 793493 - 793517 + g 100 -10.1 -5.13473 | CTTGTTGTACCTTCG TCCAACAAATC GCG GAGTTGTTGGA TTTTTTGCATATAGT yscN 795029 - 793701 - | type III secretion system ATPase TERM 796 794200 - 794159 - G 100 -12.9 -5.07567 | GTAGAGTGGAAAAAA CCGATGGAGTGTATCCTGC TCTA GCAGGAGGCTCTCCAGCGG CTAACCCCACTTCCC TERM 797 794814 - 794799 - G 71 -9 -3.30243 | ACTCACTCCTGATAA CTCTCC TAAA GGAGAG AGAAAGGCAAAACTC CPn0708 795705 - 795031 - | hypothetical protein CPn0709 796188 - 795739 - | hypothetical protein CPn0710 796461 - 796207 - | hypothetical protein CPn0711 796731 - 796483 - | hypothetical protein CPn0712 799315 - 796778 - | FHA domain-containing protein TERM 798 798821 - 798801 - G 70 -2.5 -5.0538 | overlap 798804 GCTGATGCTAAAAAA GCATCAGCA AGC TCCTGATCC CCACTTGTAATTGGA CPn0713 799721 - 799329 - | hypothetical protein hemA 801107 - 800088 - | glutamyl-tRNA reductase TERM 799 801536 - 801561 + H 74 -9.2 -3.11326 | opp_overlap 801539, overlap 801539 CAAGACTAAGATCCA TAAGTTTCGT CTTAGT ACGAAACTTA TATGTTGAGCTTGTC TERM 800 802559 - 802549 - g 75 -3.2 -5.16841 | GCATAGCAATAAAAA TAGC CTC GCCA ATTTTTGAATCGCAA TERM 801 803092 - 803107 + G 72 -6.2 -4.3255 | ACGGTATGCATATTC GTAATC TTTT GATTAC TTTCTTCCTTAAAAC gyrB_2 801657 - 803465 + | DNA topoisomerase IV subunit B TERM 802 804616 - 804592 - g 70 -10 -2.56728 | opp_overlap 804591 804594, overlap 804570 804591 804594 ATGACCTACATCAAG CAGTGCTCCA TGCTC TGGAGCCCTG GCTTCATGAGCTTGC gyrA_2 803469 - 804905 + | DNA topoisomerase IV subunit A CPn0717 805010 - 805309 + | hypothetical protein CPn0718 805309 - 805629 + | hypothetical protein sfhB 805916 - 806893 + | pseudouridine synthase CPn0720 807003 - 807239 + | hypothetical protein TERM 803 807263 - 807236 - f 70 -4.2 -4.69656 | gap 1, opp_overlap 807239 807241, overlap 807231 807239 807240 AATTATGGAAGAAAA GTAGC-CTTAAGC CTA GCTTAAGTACTTC TCATTGAAATTGCTA TERM 804 807241 - 807257 + F 73 -9.5 -2.89447 | opp_overlap 807240 807239 807236 807231, overlap 807239 TGGAAGAAAAGTAGC CTTAAGC CTA GCTTAAG TACTTCTCATTGAAA TERM 805 807349 - 807339 - f 74 -6.8 -4.40605 | ACGCATAAAGATAAA CTCG GAC CGAG CAGGACTCGAACCTG TERM 806 807508 - 807497 - f 82 -4.4 -5.5112 | TCTACCAAGAAAAAA GTCA ATTC TGAC ACAAGATTTTCTTGT TERM 807 808083 - 808067 - g 84 -3.6 -5.58209 | GTAAATTTAAAAAAA GGGCAG TTTCT CTCCCC TTGGGATATGGAAGG TERM 808 808153 - 808137 - g 73 -3.7 -5.02606 | CAGGAAATAACAAAA TCTTACT TAC AGAAAGA GGGTGTAGCTTCGGT kdsA 807683 - 808492 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 809 808659 - 808647 - g 95 -3.3 -5.93252 | TTTAAAAATAAAAAA GGTGA ATG TCTCC AAACAAATTTGCTCT CPn0722 808489 - 808977 + | hypothetical protein TERM 810 809361 - 809392 + G 75 -10.2 -2.87132 | opp_overlap 809340 809362 809384 809390, overlap 809340 TGATGATTTGCAACT AGGTTCCTGCCT CCATAAAA AGGCAGGAACCC TATCTGGAGGGGAAC TERM 811 809391 - 809362 - g 100 -15.1 -2.72661 | opp_overlap 809340 809361, overlap 809340 809384 809390 GATGATTTGCAACTA GGTTCCTGCCTCC ATAA AAAGGCAGGAACC CTATCTGGAGGGGAA yhbG 808984 - 809706 + | ABC transporter ATPase CPn0724 810527 - 809703 - | hypothetical protein TERM 812 810192 - 810168 - G 70 -2.9 -4.95547 | opp_overlap 810168, overlap 810160 TTGACAATAAGAAAA TCCTAACAAAA GGA TTCTATGAGGA CGACGCATCTCCTCT CPn0725 810811 - 810584 - | hypothetical protein CPn0726 813372 - 810877 - | hypothetical protein TERM 813 811819 - 811834 + g 73 -3.9 -4.92756 | opp_overlap 811814, overlap 811820 CCGAAAATAACTTCG TGCCG TAGATT CGGCG TTTGTTTTTGCTAGT CPn0727 813577 - 816195 + | hypothetical protein TERM 814 816199 - 816232 + T 75 -4.7 -4.86902 | gap 1, overlap 816201 TATTCCAACTAATTG CATCC-TTAGGAGTTT TTA GAGCTCCTAAAGGATC TTTTCTTCTCCTTTA TERM 815 816201 - 816230 + T 73 -7.3 -4.03023 | gap 1, overlap 816199 TTCCAACTAATTGCA TCC-TTAGGAGTTT TTA GAGCTCCTAAAGGA TCTTTTCTTCTCCTT TERM 816 816443 - 816491 + T 72 -9.1 -2.69151 | gap 1, opp_overlap 816440 816438 816473, overlap 816440 ATTTATTGAAGATCG TTCTAGTGTGTTGGTAAGGCCT CAACAA AGGCCTTACCAAAGCAC-ATAA TAATCTCTCCAAACG CPn0728 818477 - 816522 - | hypothetical protein TERM 817 818003 - 818017 + g 72 -7.8 -3.79747 | overlap 818014 TCTTAGTTTCCCACT CCGCAG CGA TTGCGG TTTCCTCATCAGTAG TERM 818 818558 - 818534 - R 100 -7.9 -6.60239 | opp_overlap 818533 818534 AAAAATAAAAAAAAA GCTCTCACTAA TAA TTAATGCGAGC CTGTTTTTAAAGATT CPn0729 819857 - 818589 - | hypothetical protein mviN 821603 - 819960 - | integral membrane protein TERM 819 820160 - 820117 - GH 82 -4.7 -5.36441 | gap 1, opp_overlap 820120, overlap 820121 CTCTCAGATAAAAAA GCAATTGCTTGAGCCGTTAT GGAGG ATAAGGGC-CAAGCAAGTGG TGTGAGGGGGTTTAA TERM 820 820156 - 820121 - GH 82 -8.5 -4.01646 | gap 1, opp_overlap 820120, overlap 820117 CAGATAAAAAAGCAA TTGCTTGAGCCGTTAT GGAGG ATAAGGGC-CAAGCAA GTGGTGTGAGGGGGT TERM 821 820610 - 820586 - GH 93 -10 -4.18494 | CACTCTGAGGGAAAA GTCCGTGTTC ATAAA GGACACGGAC TCCAGGTAAAGCTAA TERM 822 821203 - 821192 - GH 77 -5.8 -4.74215 | ACATCATTAAGAAAA TGCC ACAG GGCA AGAGTATCATAGTAA CPn0731 821587 - 821763 + | hypothetical protein TERM 823 822905 - 822888 - g 73 -3.5 -5.00765 | AACGAACTAGAAAAA TTCCTAA GTAT TTAGAAA CCCCTGGTGGGCCTG nfo 822098 - 822979 + | endonuclease IV TERM 824 823066 - 823043 - T 100 -7.5 -6.02546 | gap 1, opp_overlap 823043 TGAAATCAAAAAAAA CGCCATACTG ATATA CAGT-TGGCG TTTTCTAGAAAAGAT TERM 825 823043 - 823066 + T 81 -7.5 -4.37092 | gap 1, opp_overlap 823043 TGAAATCAAAAAAAA CGCCATACTG ATATA CAGT-TGGCG TTTTCTAGAAAAGAT rpsD 823727 - 823098 - | 30S ribosomal protein S4 TERM 826 823400 - 823388 - G 75 -9.1 -3.71848 | GTCCGTGAGCAACAA GCTGC TGA GCAGC AAAAATTGTTTTTGC yceA 823944 - 824918 + | hypothetical protein CPn0735 825668 - 825000 - | uridine kinase TERM 827 825817 - 825763 - RH 89 -6.7 -5.58522 | gap 1, opp_overlap 825764, overlap 825764 825816 GAGACAAAAGAAAAA GCTTCGTGATCAGAAAATGACTATAT CTAA AGATT-TCAATTTCTGATCACGAAGT TTAGGATAGAATTCT TERM 828 825816 - 825764 - RH 93 -10.2 -3.92673 | gap 1, opp_overlap 825764, overlap 825763 AGACAAAAGAAAAAG CTTCGTGATCAGAAAATGACTATAT CTAA AGATT-TCAATTTCTGATCACGAAG TTTAGGATAGAATTC TERM 829 825764 - 825816 + rH 86 -10.2 -3.61103 | gap 1, opp_overlap 825763 825764 AGACAAAAGAAAAAG CTTCGTGATCAGAAAATGACTATAT CTAA AGATT-TCAATTTCTGATCACGAAG TTTAGGATAGAATTC ygeD 827686 - 825989 - | efflux protein TERM 830 826550 - 826533 - GH 80 -2.7 -5.4251 | CCGATATAGAAAAAA CTTGTTT CAGG AGACAAG CCTAAGTTACTTCCC TERM 831 827059 - 827070 + gH 71 -4.4 -4.79451 | opp_overlap 827059, overlap 827054 ATAAATCTTTGAAAC TCAC CAAG GTGA TTTTCTGTTTCACAT TERM 832 827795 - 827781 - gH 88 -7.2 -4.84527 | opp_overlap 827781 TCCACACATCAAAAA CCTTTT ACC AAAAGG TGGATTCTTGTTGCA TERM 833 828447 - 828419 - gH 82 -3.1 -5.4505 | CTCCCCAATAAAAAA TGCCTGGGAACAC TAT GTATTATCAGACA GGCAAGCACTTCTTG TERM 834 828720 - 828732 + GH 79 -3.3 -5.28561 | overlap 828729 CTGCATCGCGGAGTG TCACC TGA GGAGA TTTTTATTCTCTCTT recC 827685 - 830759 + | exodeoxyribonuclease V, gamma TERM 835 830883 - 830846 - g 76 -10 -3.24076 | gap 1, opp_overlap 830872, overlap 830844 830842 830847 830881 TTACTATAGAACAGA TCGTGTT-GCGAGCCTT GATTG AAGGCTCGCTAACACAT GTAGAACATGCCTTA TERM 836 830882 - 830847 - g 91 -13.5 -2.53964 | gap 1, opp_overlap 830872, overlap 830846 830844 830842 830881 TACTATAGAACAGAT CGTGTT-GCGAGCCTT GATTG AAGGCTCGCTAACACA TGTAGAACATGCCTT TERM 837 832312 - 832296 - g 81 -5.1 -5.18715 | opp_overlap 832298, overlap 832298 ACAAAAAGAACAAAA GATTCCC CTA GGGAATA TGGTTGTCCTGGTCT TERM 838 832310 - 832298 - g 76 -7.7 -4.17151 | opp_overlap 832298, overlap 832296 AAAAAGAACAAAAGA TTCCC CTA GGGAA TATGGTTGTCCTGGT TERM 839 833807 - 833820 + G 70 -3.8 -4.81851 | opp_overlap 833807 TCCGTGGCATAGACA CCCA AGGAAA TGGG TTTTTCGCTTTAAAT recB 830746 - 833898 + | exodeoxyribonuclease V, Beta CPn0739 834871 - 833858 - | hypothetical protein TERM 840 833941 - 833927 - G 100 -10 -4.68908 | GGGAGGTAAAATAAA GAGCTG ATC CAGCTC CATAAGCTTTTCTTC tyrB 836048 - 834861 - | aromatic amino acid aminotransferase TERM 841 834943 - 834965 + g 74 -7.7 -3.9644 | overlap 834945 AAATTCATTCTTCCT CCCGCTGTT GTATA AACAGCGTG TTGTTCTCTTAAAAA TERM 842 834945 - 834963 + g 73 -8.9 -3.56921 | overlap 834943 ATTCATTCTTCCTCC CGCTGTT GTATA AACAGCG TGTTGTTCTCTTAAA TERM 843 835054 - 835041 - G 71 -2.4 -5.18726 | TTGGGACAATAAAAA GTCA AATGTA TGAC CGGCAACCTTACGCA greA 838350 - 836182 - | fused transcript cleavage factor/uncharacterized domain-containing protein TERM 844 838097 - 838081 - G 71 -2.3 -5.21709 | opp_overlap 838081 GGCTATATCAAAAAA CATCT GGCTGTT AGATG TTTGCAAATCTAAAA CPn0742 838463 - 838891 + | hypothetical protein nqrA 838962 - 840365 + | Na(+)-translocating NADH-quinone reductase subunit A hemB 841384 - 840386 - | delta-aminolevulinic acid dehydratase CPn0745 841903 - 841739 - | hypothetical protein TERM 845 841854 - 841840 - G 71 -10 -2.57132 | overlap 841839 GCTTGGGGTCATAAG CGACGT TAT ACGTCG TACTCCCCTGTAGGG CPn0746 841975 - 843570 + | hypothetical protein TERM 846 844009 - 844033 + T 100 -15.9 -5.24531 | TCCAGATCTCTCTCG GGGATGAAGAT TTT ATCTTCATCCC TTTTTTATAAGAAAT ispA 844987 - 844118 - | geranyl transtransferase glmU 845629 - 845003 - | UDP-GlcNAc pyrophosphorylase tctD 846411 - 845704 - | HTH transcriptional regulatory protein + receiver Doman TERM 847 845801 - 845820 + g 95 -5 -5.7946 | opp_overlap 845800 CGAATCGTTACAATT TTAGATCC GTAG GGACCTAA TTTTTTTCTTAAAGA TERM 848 846380 - 846368 - G 76 -7.7 -4.20025 | AATTGCGAAGATAAA CTGAG ATC CTCAG TAACAAACAATATGA TERM 849 847154 - 847172 + G 76 -10.4 -2.93335 | overlap 847153 AGTATTGAACAGCTG CTAACAGA TTT TCTGTTAG ATTATATTTCTGCGC CPn0751 846608 - 848437 + | hypothetical protein TERM 850 848693 - 848711 + G 70 -6 -4.29117 | overlap 848700 TGCTTCTAAGCACAT CTCTTCGG ACT TTGAAGAG TCTTTTGTTTTTCTC TERM 851 848700 - 848713 + G 79 -3.1 -5.35224 | overlap 848693 AAGCACATCTCTTCG GACTT TGAA GAGTC TTTTGTTTTTCTCGC TERM 852 849046 - 849085 + G 81 -5.3 -5.08824 | gap 2 AAATAACTCAAGGAT GTTTTTCTATAGTTTCTGG AGGC CCAGGAAC-A-GGAAAAAC TTTTTTAGCTGCACA TERM 853 849561 - 849571 + G 74 -4 -4.95155 | TCTGTATTGCGTGGC GAAA TGA TTTC TTTTTCTCCTCTCCC recD_2 848604 - 850085 + | exodeoxyribonuclease V, Alpha TERM 854 850130 - 850107 - T 93 -5.2 -6.11229 | opp_overlap 850107 ATCAAAATAAAAAAA CCCTCAAAGA ATAC TCTAAGAGGG TTTTTTTGCTGCGAA TERM 855 850107 - 850130 + T 84 -5.2 -5.52384 | opp_overlap 850107 ATCAAAATAAAAAAA CCCTCAAAGA ATAC TCTAAGAGGG TTTTTTTGCTGCGAA CPn0753 851006 - 850158 - | hypothetical protein rpsT 851336 - 851037 - | 30S ribosomal protein S20 CPn0755 851597 - 852802 + | hypothetical protein TERM 856 853640 - 853655 + G 80 -9 -4.03167 | AGTGTCGTATTCGGA CGCAAG CCTA CTTGCG TTGTTTCCATTGTCG TERM 857 853809 - 853779 - g 74 -6.8 -4.38748 | opp_overlap 853778 853775, overlap 853776 853780 TGCAGAAAGAAATAA GTTTGCTGCTGCAA AGT TGGCAGCAGCTAAG CGTAAGTTGTATAAA TERM 858 853808 - 853780 - g 77 -10.3 -3.22164 | opp_overlap 853778 853775, overlap 853779 853776 GCAGAAAGAAATAAG TTTGCTGCTGCAA AGT TGGCAGCAGCTAA GCGTAAGTTGTATAA TERM 859 854434 - 854454 + G 81 -7.5 -4.7261 | opp_overlap 854425 854435, overlap 854435 AAAGAGGTCTTAAAG ACGCTTACG GAT CGTGAGCGA TTTGTTTTGATCCAT TERM 860 854453 - 854435 - g 71 -8.8 -3.36341 | opp_overlap 854434 854435 AAGAGGTCTTAAAGA CGCTTACG GAT CGTGAGCG ATTTGTTTTGATCCA TERM 861 854435 - 854453 + G 83 -11 -3.42481 | opp_overlap 854435, overlap 854434 AAGAGGTCTTAAAGA CGCTTACG GAT CGTGAGCG ATTTGTTTTGATCCA rpoD 852961 - 854679 + | RNA polymerase sigma factor TERM 862 855066 - 855051 - gf 71 -4 -4.89852 | gap 1 CTAGAGGTAGAAAAA GAAC-GG CCA CCTGTTC CCAACCTATTAAATC folX 854733 - 855137 + | dihydroneopterin aldolase folP 855110 - 856462 + | dihydropteroate synthase folA 856488 - 857000 + | dihydrofolate reductase CPn0760 856957 - 857697 + | hypothetical protein CPn0761 857704 - 858378 + | hypothetical protein TERM 863 858483 - 858444 - T 100 -18.8 -3.57792 | opp_overlap 858446 858449 858481, overlap 858446 858449 TCATGCATCTGTAAA CAGAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTCTT TGTCTCAAGGTAATT TERM 864 858481 - 858446 - T 100 -21.4 -3.36694 | opp_overlap 858446 858449, overlap 858444 858449 ATGCATCTGTAAACA GAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTC TTTGTCTCAAGGTAA TERM 865 858446 - 858481 + T 100 -19.2 -4.04206 | opp_overlap 858446 858444 858449, overlap 858449 ATGCATCTGTAAACA GAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTC TTTGTCTCAAGGTAA TERM 866 858478 - 858449 - T 100 -17.3 -3.82202 | opp_overlap 858449 858446, overlap 858446 858444 CATCTGTAAACAGAA TCCCCCCTCCTAA AGTA TTAGAAGGGGGGA TTCTTTGTCTCAAGG TERM 867 858449 - 858478 + T 100 -15.1 -4.14627 | opp_overlap 858446 858444 858449, overlap 858446 CATCTGTAAACAGAA TCCCCCCTCCTAA AGTA TTAGAAGGGGGGA TTCTTTGTCTCAAGG recA 859597 - 858536 - | recombinase A ygfA 860511 - 859969 - | formyltetrahydrofolate cycloligase TERM 868 860427 - 860405 - G 80 -9.1 -3.90856 | opp_overlap 860404 860401 860396 AAGCTGCGAACGAAA GAGGCCACT GCAGA AGAGGCCTC ATGCTTGCGTTCTTC CPn0764 861807 - 860521 - | hypothetical protein CPn0765 862382 - 861798 - | hypothetical protein CPn0766 863782 - 862391 - | hypothetical protein TERM 869 864094 - 864104 + G 75 -5.4 -4.90381 | GGTCTGCTTTGCCTT GGAA TCC TTCC TTTTGTTATATTAAG TERM 870 864135 - 864145 + G 70 -2.6 -4.93968 | AGTCCTACGTTTTAT TATT CTT AATA TTTTTCATTCTCCAT CPn0767 863884 - 864180 + | hypothetical protein TERM 871 864937 - 864919 - g 76 -6.8 -4.48741 | GAAGCTATGAGAAAA TTCCCTTT ATC AAAAGGAA AGCTGCGTTTCTGGA yohI 864159 - 865166 + | oxidoreductase topA 867733 - 865118 - | fused DNA topoisomerase I/SWI domain-containing protein TERM 872 865384 - 865396 + g 70 -2.7 -5.00884 | ATAAAGGACCTGTTT TCTTT TCT GAAGA TTTTTTAACCGAGCT TERM 873 866832 - 866844 + g 75 -9.1 -3.63627 | opp_overlap 866830 CTATCTAAATCGACG CCCTC ATA GAGGG TTTGCGCTATAGACA TERM 874 866995 - 867013 + g 71 -6.6 -4.20025 | opp_overlap 866995 AGGATTTCTCTAACA GCTCGGCA TAG TGACGGGC TTTCTCTTCAGAGTT TERM 875 867055 - 867066 + g 73 -5.8 -4.55697 | CATCATTTTCGGTTT TCCC TTCA GGGA TTTCTTTCTCCCACT CPn0770 868340 - 869134 + | hypothetical protein rpoN 870463 - 869141 - | RNA polymerase factor sigma-54 uvrD 872385 - 870466 - | DNA helicase TERM 876 870812 - 870829 + g 71 -4.2 -4.90079 | opp_overlap 870804 870812, overlap 870823 TCATCAAGGAAAAGT TCCAAA TGTGTC TTTGGA TTTTGTTGTTCGGAT ung 872488 - 873198 + | uracil-DNA glycosylase CPn0774 873195 - 873428 + | hypothetical protein yggV 874031 - 873411 - | putative deoxyribonucleotide triphosphate pyrophosphatase CPn0776 874246 - 875490 + | hypothetical protein TERM 877 875734 - 875724 - g 75 -3.2 -5.1675 | GTAGTCATCAAAAAA GGAA AAG CTCC TATTGTCTTAACGAA groEL 875601 - 877181 + | chaperonin GroEL ahpC 877505 - 878095 + | Thio-specific antioxidant (TSA) peroxidase CPn0779 878481 - 878092 - | hypothetical protein amiB 879205 - 878588 - | N-acetylmuramoyl-L-Ala amidase pal 879773 - 879195 - | peptidoglycan-associated lipoprotein tolB 881065 - 879770 - | translocation protein TolB CPn0783 881885 - 881097 - | hypothetical protein TERM 878 881303 - 881342 + g 95 -11.6 -3.762 | overlap 881306 CATACCCTTTAGAGG GGAGAGCTATGTGAGT GCGAAATA ACTCACATAGCTCGTC TTCTTGAGTTGCTTT TERM 879 881306 - 881339 + g 95 -14.1 -2.66329 | overlap 881303 ACCCTTTAGAGGGGA GAGCTATGTGAGT GCGAAATA ACTCACATAGCTC GTCTTCTTGAGTTGC TERM 880 881407 - 881431 + g 100 -10.9 -4.56358 | GGCCAGGAGATATTT TTGAGAGAAGT TTC ACTTTTCTCAA TTTTATCTACATGTA exbD 882296 - 881889 - | biopolymer transport protein exbB 882991 - 882293 - | proton channel protein TolQ TERM 881 883656 - 883671 + G 74 -7.6 -3.99324 | opp_overlap 883656 ACACTGCCCTACGAA GAGAAG GAGC CTTCTC TTTATCCTGATACAC dsbD 883185 - 885296 + | Thio:disulfide interchange protein TERM 882 885366 - 885383 + F 100 -12.7 -5.38054 | opp_overlap 885362 CCTTAAAAATTGTTA GGGCAGC ATAT GCTGCCC TTTTTATTTGTAACA TERM 883 885903 - 885886 - g 74 -6.9 -4.31293 | opp_overlap 885885 GCACATAGTAAGAAA CTCGCCG CAAT CGGAGAG GTCGGTTTAGATTAT TERM 884 886349 - 886339 - g 74 -6.8 -4.27316 | GTTGCCAATGTAAAA GGGA TGT TCCC ACAAGAGCTTGCAGC yabD 885619 - 886404 + | PHP superfamily (urease/pyrimidinase) hydrolase TERM 885 886407 - 886431 + F 75 -10.1 -2.5671 | overlap 886406 886405 TCTGCACGGTTAATT TGATGGAGTTC ATA GAACTCCATAA CCTTTCTATTTTGTC sdhC 886542 - 887435 + | succinate dehydrogenase sdhA 887439 - 889319 + | succinate dehydrogenase flavoprotein subunit sdhB 889330 - 890106 + | succinate dehydrogenase iron-sulfur subunit CPn0791 893050 - 890108 - | hypothetical protein TERM 886 890762 - 890748 - G 72 -7.2 -3.96148 | TGGTCGGAGCAGAAA TCATGA AAG TCATGA ACTACATGTTGCAAA TERM 887 892171 - 892205 + g 72 -9.4 -3.23449 | overlap 892169 TCTCATGGACATTTT GTAGTTTTTGCATCAA ATA TTGATGCGAGAGCAAC TGTTGGATTTGTGCT CPn0792 894919 - 893105 - | hypothetical protein TERM 888 893481 - 893499 + g 75 -3.1 -5.24129 | GTTTTTGAGAAGCTG TCGGCAG TATCC TTGCTGA TTTTTTGTAACGAAA TERM 889 894504 - 894515 + g 71 -2.2 -5.24551 | AAGGCTTTCCCTACA GCTG CGGA TAGC TTTTTCTTCATTTCA rbsU 896823 - 894916 - | sigma regulatory family protein - PP2C phosphatase (RsbW antagonist) TERM 890 895216 - 895196 - G 82 -10.5 -3.69434 | GGAAGGAAGCCTAAA GCCATTCCA GGA TGGAATAGC CAAGAAGTCTCGCCA TERM 891 895909 - 895947 + g 89 -7.3 -5.0538 | opp_overlap 895932, overlap 895912 895914 GAAATAGGCAGTGTA CATGCGAGCTCTGCGCC ATAAA GGCGCAAAGCTCTCTTC TTTTTTAGCATAGGA TERM 892 895912 - 895944 + g 100 -13.4 -4.63089 | opp_overlap 895932, overlap 895909 895914 ATAGGCAGTGTACAT GCGAGCTCTGCGCC ATAAA GGCGCAAAGCTCTC TTCTTTTTTAGCATA TERM 893 895914 - 895942 + g 100 -14.6 -3.91465 | opp_overlap 895932, overlap 895912 895909 AGGCAGTGTACATGC GAGCTCTGCGCC ATAAA GGCGCAAAGCTC TCTTCTTTTTTAGCA CPn0794 897174 - 898007 + | hypothetical protein TERM 894 898030 - 898044 + F 71 -6.4 -4.15788 | opp_overlap 898039 TAGGAGGGGCGAATT CTTCAG CAA CTGGAG TTTCTTCAGACGGTT CPn0795 898128 - 899198 + | hypothetical protein TERM 895 899290 - 899263 - f 100 -11.5 -4.76423 | opp_overlap 899263 GATAAACAGATAAAA TATAGCTCAGA ATATAA TCTGAGCTATA TTCTTCTTACTTGCA TERM 896 899263 - 899290 + F 93 -11.5 -4.0342 | opp_overlap 899263 GATAAACAGATAAAA TATAGCTCAGA ATATAA TCTGAGCTATA TTCTTCTTACTTGCA TERM 897 900728 - 900739 + G 70 -5.8 -4.4009 | opp_overlap 900727 GCAGAATCAGCAATT GCTC ACAG GAGC TTTTATGGACTGGAA CPn0796 899301 - 901343 + | hypothetical protein CPn0797 901600 - 902697 + | hypothetical protein TERM 898 902738 - 902768 + F 81 -7.9 -4.39133 | gap 1, opp_overlap 902748 AAGTAAATCGTAAGC TTGGAATTCATGAA GTGA TTCAT-AATTCCAA TTTTCATACTTGTTG CPn0798 902846 - 903859 + | hypothetical protein CPn0799 904986 - 903937 - | hypothetical protein eno 906532 - 905246 - | phosphopyruvate hydratase uvrB 908697 - 906724 - | excinuclease ABC subunit B trpS 909740 - 908706 - | tryptophanyl-tRNA synthetase CPn0803 910303 - 909749 - | hypothetical protein TERM 899 909801 - 909821 + g 70 -2.5 -4.96848 | TTTAATGATGTAATT TCTTCTTGA ATT TCCTGAAGA TTTTTCTCTCCAACA TERM 900 910331 - 910342 + r 71 -3 -5.14894 | opp_overlap 910331 TGTATCGGGAAAGAG GTTA CTTT TAAC TTTTTCTAGTTTTTT gp6D 911059 - 910307 - | hypothetical protein TERM 901 910508 - 910524 + g 89 -6.5 -5.28942 | GAACTCTTTGCGAAT GCGATCT AAA AGCTCGC TTTTTCTTTCCCCTC minD 911831 - 911064 - | chromosome partitioning ATPase thrS 913771 - 911864 - | threonyl-tRNA synthetase TERM 902 913845 - 913864 + H 74 -2.2 -5.45813 | opp_overlap 913845, overlap 913847 913856 TGATCAAAGCAAGAA GCTTTTTT TTAT AAAAAAAC TTTTATTTTTTAATA TERM 903 913883 - 913864 - H 78 -2.2 -5.60993 | opp_overlap 913856 TTTTTTATAAAAAAA CTTTTATT TTTT AATACAAG TTCCAAAGCGCCAGG TERM 904 914168 - 914185 + G 79 -8.5 -4.2074 | ATTCTTATATATCGT CCTGTTA GCTT TAACAGG TTTCTATCTTACCAA CPn0807 913971 - 914882 + | hypothetical protein TERM 905 914907 - 914925 + T 100 -10.3 -5.52986 | opp_overlap 914907 GCTTTACATGAAAAA GCTCGGT ATCAA ACCGAGC TTTTTTTGATCAGAT TERM 906 914925 - 914907 - T 100 -10.3 -4.8048 | opp_overlap 914907 GCTTTACATGAAAAA GCTCGGT ATCAA ACCGAGC TTTTTTTGATCAGAT CPn0808 916287 - 914953 - | hypothetical protein TERM 907 916073 - 916086 + g 82 -2.4 -5.59357 | CTACTTTTAGTAGTT GAAG ATGTAG CTTC TTTTTTTCCTGTACT CPn0809 917785 - 916304 - | hypothetical protein TERM 908 917536 - 917568 + g 71 -4.1 -4.91109 | opp_overlap 917545 CTGAGGATTCTTTCC CAGCAGCAACTCC CTGTTGT GGAGCTGTTTCTG TTTTTGTAGTCGAGG CPn0810 918184 - 917822 - | hypothetical protein lcrH_1 918900 - 918205 - | low calcium response protein H TERM 909 918409 - 918437 + g 72 -9.8 -2.78384 | gap 1 GTTAGATTCTTCGGG TTGCTG-TAGCTT CAAT AAGCTATCAGCAA TGTAGTAAGGAGGAA TERM 910 919292 - 919316 + G 76 -10.9 -2.52464 | opp_overlap 919288, overlap 919295 919296 GAGGGGGACAAGGCG CAATCATTATC AGA GATAATGGTTG TGGCTTCAGAGCCGA TERM 911 919965 - 919975 + G 82 -6.8 -4.91109 | GCTTCTGCCTCTACA CAGG TAT CCTG TTTTTGTGCTGAAGC TERM 912 920505 - 920519 + G 95 -5.6 -5.60689 | overlap 920507 TCTACGCCTTCAGGT GACTCC TGA GGAGGC TTTTTTCTTCTCTCA TERM 913 920573 - 920590 + G 71 -4.9 -4.67943 | gap 1, opp_overlap 920564 920573 TAGGAATAGAAATAT CAC-AGGT AGG ACCTTGTG TTTTCTCTATTGAAA mutL 919123 - 920865 + | DNA mismatch repair protein TERM 914 921893 - 921883 - g 70 -2.6 -5.04597 | opp_overlap 921883 ATGTATAGATAAAAA TAAA AAT TTTA GTTTGACTGCACGTC pepP 920870 - 921937 + | aminopeptidase P TERM 915 921957 - 921977 + F 75 -4.9 -4.97405 | opp_overlap 921963, overlap 921931 AATTGGATTTAGTTT TTAAATTTA AAT TGAATTTAA TTTGTTTTTATAAAT TERM 916 922013 - 922025 + F 75 -4.9 -4.87389 | TTTTTTGTTTTTTAA GTTAT CTT ATAAC TTTATTTTTAACCTG TERM 917 922661 - 922649 - g 84 -6.3 -5.07652 | TCCTGTAAAACAAAA GATAC GTC GTATC GGTGTGGATAAGTTT TERM 918 922779 - 922791 + G 70 -7.7 -3.60098 | CGGTACCTTGCTGTT GGAGA TGT TCTCC TTTGGGATGGCAACT CPn0814 922107 - 923360 + | hypothetical protein TERM 919 923954 - 923970 + G 73 -2.9 -5.14563 | GATGCGTAAGGAGGG CTGCAGT GTT GCTGGAG TTTTTTCCTCCAGAA gspD 923361 - 925625 + | general secretion protein D gspE 925615 - 927105 + | genral secretion protein E TERM 920 927238 - 927222 - g 79 -8.1 -4.25104 | opp_overlap 927222 GCTCGCCCAGGAAAA TATCCAA GTT TTGGATA TTCGTGAGGTCGCCT gspF 927115 - 928290 + | general secretion protein F CPn0818 928314 - 928685 + | putative outer membrane protein CPn0819 928689 - 929135 + | hypothetical protein TERM 921 929165 - 929146 - g 78 -5.8 -4.76041 | gap 1, opp_overlap 929146 TATAGCTATGAAAAA GCA-AAAGC GTG GCTTTGTGC TTATGGAATTACTCA CPn0820 929120 - 929662 + | hypothetical protein CPn0821 929667 - 930671 + | hypothetical protein CPn0822 930756 - 931232 + | hypothetical protein TERM 922 931289 - 931251 - T 73 -8.3 -3.53224 | opp_overlap 931240 931251 931286 TACTTTTTCCCTAAA GGCAAAATGTTGAAG CCCTCCTTT CCTCAACTTTTTGCC TTGTTTTCAGGCATG yscT 932367 - 931498 - | Yop proteins translocation protein T yscS 932662 - 932375 - | Yop proteins translocation protein S yscR 933594 - 932674 - | type III secretion system protein yscL 934310 - 933609 - | type III secretion system protein CPn0827 935264 - 934431 - | hypothetical protein yscJ 936271 - 935264 - | Yop proteins translocation lipoprotein J TERM 923 935439 - 935452 + g 76 -6.7 -4.42653 | TTTGTATATGGTGTA GGGTT GAAG AACCC TTTTGTACCTCCCAT TERM 924 936068 - 936112 + g 70 -3.7 -4.82901 | gap 3, overlap 936080 CGCGATATCCCACAT TTGC-TCAGTAGCTGCTCCGGC TGTA GCCGCTGCAGCT--TGAGGCAA TTTTTGTGCAGCCAC CPn0829 936744 - 937301 + | hypothetical protein CPn0830 937444 - 937962 + | hypothetical protein TERM 925 938292 - 938282 - g 75 -5.4 -4.77165 | GTGCTTATAAGAAAA TCTG AAT CAGA AGGAGCTTTTTTTGA CPn0831 938267 - 938437 + | hypothetical protein lipA 939747 - 938824 - | lipoyl synthase lpdA 941129 - 939744 - | dihydrolipoamide dehydrogenase TERM 926 941371 - 941385 + H 77 -10 -2.99951 | overlap 941368 TTAATGGCATTTTAG CGACCT AAG AGGTCG TGATTTCATAATTGA TERM 927 941660 - 941681 + G 70 -3.6 -4.89477 | overlap 941661 CGCCTTTCTTCAAGA TCCTCCAG TAGCCT CAGGAGGG TTTTCTTCTTGCCAC CPn0834 941553 - 942017 + | hypothetical protein CPn0835 945689 - 942042 - | SWI/SNF family helicase_1 TERM 928 943739 - 943761 + g 71 -4.2 -4.89521 | opp_overlap 943740 943752, overlap 943740 TCTGCGTAGATAGGA ACTGTTTTAA AAA TTGAAACAGG TTTTGTTTCAAATCT TERM 929 943772 - 943752 - G 79 -7 -4.58283 | opp_overlap 943740 943739, overlap 943740 943761 GAACTGTTTTAAAAA TTGAAACA GGTTT TGTTTCAA ATCTAAAAAGCCAGC TERM 930 943991 - 943973 - G 70 -3.8 -4.87803 | GATTTGGAAATAAAA TACGCTCA TGC TGCGCATA CTGTGTAAGAAACTG brnQ 946879 - 945719 - | branched chain amino acid ABC transporter nth 947771 - 947142 - | endonuclease III TERM 931 947427 - 947411 - G 71 -2.3 -5.08601 | overlap 947383 CTATCCCAAGAAAAA CAGAA GCGGTTT TTCTG CCAACTCCCGGAAGT trmE 949106 - 947778 - | tRNA modification GTPase TrmE TERM 932 948662 - 948652 - G 71 -4 -4.83169 | ATTTTCTTAGAAAAA TTTC CTT GAAA ATGCGTTTGAGCAAT TERM 933 949515 - 949525 + G 81 -4 -5.40072 | GTTGCAGACTTCACC TCAT TTA ATGA TTTTTTTACCCGGAA psdD 949257 - 950162 + | phosphatidylserine decarboxylase TERM 934 950419 - 950405 - g 90 -5.6 -5.44119 | opp_overlap 950405, overlap 950407 CCTATTTTAAAAAAA CGGTCG TAT CGACGG CAGTGTTTATTTGAA TERM 935 951463 - 951479 + G 73 -7.3 -4.18018 | GGAGAAACAACGACG TTCGCAG ATT TTGCGAA TTTTACGTAAAAAAC CPn0840 950222 - 951547 + | hypothetical protein TERM 936 953111 - 953130 + G 70 -3.5 -4.83169 | opp_overlap 953106 953111, overlap 953109 GATGAACATACAGGA CGTCCTC AACCTG GACGACG TTTTTCTGAAGGCCT secA 951731 - 954643 + | preprotein translocase subunit SecA TERM 937 954676 - 954648 - T 100 -9.8 -4.33755 | gap 1, opp_overlap 954649 954651, overlap 954651 ATCAAGATTAAGAAA TAACCTAGAAGGA GGAG TCCTTCTAGGT-A TTTGTTTCACAGGCT TERM 938 954649 - 954676 + T 100 -11.4 -4.41616 | opp_overlap 954648 954651, overlap 954651 TCAAGATTAAGAAAT AACCTAGAAGGA GGAG TCCTTCTAGGTA TTTGTTTCACAGGCT TERM 939 954651 - 954674 + T 100 -14 -3.81557 | opp_overlap 954648 954651, overlap 954649 AAGATTAAGAAATAA CCTAGAAGGA GGAG TCCTTCTAGG TATTTGTTTCACAGG TERM 940 954674 - 954651 - T 100 -14 -4.26924 | opp_overlap 954651 954649, overlap 954648 AAGATTAAGAAATAA CCTAGAAGGA GGAG TCCTTCTAGG TATTTGTTTCACAGG engA 956730 - 955267 - | GTP-binding protein EngA TERM 941 955860 - 955848 - G 72 -6.3 -4.29106 | opp_overlap 955847 955848, overlap 955844 TTCGAGATGAAGAAA TCCAT TCT ATGGA ATTCTTAACGCTTTT TERM 942 956242 - 956254 + g 70 -7.7 -3.61652 | overlap 956239 956238 GCGAGGTTCTGGTAG GTTGG CTA CCAAC TTAATTCTTTGAAGA pcnB_1 958079 - 956847 - | Poly A polymerase TERM 943 957327 - 957317 - G 71 -4 -4.8487 | opp_overlap 957317 GCAGTAAAAAAAGAA TTTC AGG GAAA TGTGTTGGATTAAAC TERM 944 957599 - 957589 - G 75 -3.2 -5.14163 | AGGGAGGAAGAAAAA CGTA TGG CACG TAGGATACGCAGTTT clpX 959374 - 958109 - | ATP-dependent protease ATP-binding subunit TERM 945 958255 - 958272 + g 78 -5.5 -4.93547 | TTTCTAGGATCATCC CTAGAGC ACGA GCTCCAG TTTTTGCTTGCTTGG TERM 946 958476 - 958497 + g 70 -8 -3.71649 | AATTCAGGGATCATT CCGAAGGC AATCAG GTCTTCGG TTTCAACTTTAGCAA TERM 947 958683 - 958703 + g 72 -7.6 -3.89302 | gap 1, overlap 958674 TGGTTAGGATGCTTA CGT-CCTCC TTTA GGAGGAACG TTTGCTGTGGTTCCT clpP 959995 - 959384 - | ATP-dependent Clp protease proteolytic subunit TERM 948 959649 - 959668 + g 72 -7.2 -3.95584 | gap 1 ATCATACGGCTATGG GGAAGAGCG TGA CGCT-TTCC TTTAGTTCCTGCGGA tig 961502 - 960174 - | trigger factor TERM 949 960694 - 960710 + g 71 -4.4 -4.79826 | overlap 960703 TCGTCTAGAGATTCT GCTTGT AGTTG ACGAGC TTTTTCGTCATCTAT TERM 950 961352 - 961364 + g 76 -2.7 -5.38348 | CTTTGCGGAATCCTG GAAGT GTA ATTTC TTTTTTAATCTTTTT TERM 951 963398 - 963422 + G 81 -7.1 -4.59342 | TCGCATTACTTTTAA CTGTCCGGAAA ATC TTTCAGGTCAG TTTATTTATGATGAG TERM 952 963686 - 963670 - g 75 -2.1 -5.29782 | opp_overlap 963670 963671, overlap 963671 TAGACTTAGAAAAAA TTGCTCC TGT GGTGCAG ATTTTTAATGAAATA CPn0849 961788 - 965288 + | SWI/SNF family helicase_2 mreB 965293 - 966393 + | rod shape protein-sugar kinase TERM 953 966707 - 966717 + G 75 -5.4 -4.76041 | AGAGATGCGTAGGGA GTTG CAT CAAC TTTTTCGTGGATGTA TERM 954 966880 - 966908 + G 71 -8.3 -3.43109 | overlap 966889 ATGATGTTTTACGTT CTTTAGGGACTTC GGG GAAGTTTTTAAAG TGTTTACATAGTGTG TERM 955 966889 - 966899 + G 73 -5.4 -4.6856 | overlap 966880 TACGTTCTTTAGGGA CTTC GGG GAAG TTTTTAAAGTGTTTA TERM 956 967244 - 967230 - g 71 -8.6 -3.57263 | opp_overlap 967229 ATGTTGATGCCTAAA CTTCCA GGT TGGAAG ATTGAGTGTATTGGG TERM 957 967313 - 967325 + G 79 -3.4 -5.28683 | opp_overlap 967313 GTTGTATGCTGTAAA TCCA GAATA TGGA TTTTTTGGTGTTGCT pckA 966396 - 968198 + | phosphoenolpyruvate carboxykinase CPn0852 968316 - 970616 + | hypothetical protein CPn0853 970637 - 971806 + | hypothetical protein porB 972837 - 971803 - | Outer membrane protein B TERM 958 971930 - 971968 + g 73 -7.1 -4.23007 | gap 1, opp_overlap 971943 971958, overlap 971935 971958 ACTCTGTCGAAGTTT GTGATTTTACGAATTTTA AATT TAAAATTCGT-AAATTGC TTTTCGAGTTCTGTG TERM 959 971935 - 971964 + g 100 -12.5 -3.69437 | opp_overlap 971943 971958, overlap 971930 971958 GTCGAAGTTTGTGAT TTTACGAATTTTA AATT TAAAATTCGTAAA TTGCTTTTCGAGTTC gpsA 973995 - 972991 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CPn0856 975377 - 973992 - | UDP-glucose pyrophosphorylase TERM 960 974217 - 974239 + g 70 -7.8 -3.58343 | opp_overlap 974217, overlap 974205 TAGGGGAGCAAAGCA CTCTTGTCTA GGA TACACAAGAG TTTGACAATGGTCGC TERM 961 974854 - 974830 - G 95 -8 -5.24129 | gap 1 GGTTGGCAGAAAAAA TCCACCT-GAT TTGG ATCTAGGTGGA AGTAGTCGTTGGATT CPn0857 975757 - 975389 - | hypothetical protein TERM 962 975510 - 975497 - G 71 -6.7 -4.18488 | opp_overlap 975490 975497 ATGGATTTCAAGAAA GCGAA GAGA TTCGC TCTGTTGTTTATAAA fliI 977055 - 975754 - | type III secretion system ATPase CPn0859 977588 - 977052 - | hypothetical protein fliF 978630 - 977605 - | type III secretion system protein TERM 963 978061 - 978091 + g 100 -13.4 -3.23853 | overlap 978059 CTGTAATGTGGGCTT CTCTGCTTTTGCGT GAT ACGCAAGAGCAAAG TGTTCCTTGGGGAAA TERM 964 978094 - 978121 + g 95 -9.2 -4.53163 | overlap 978097 978103 CGCAAGAGCAAAGTG TTCCTTGGGGAA AATT TTCCCCAGGTAA TTTTCTAATGTATGG TERM 965 978097 - 978118 + g 79 -10.9 -3.21099 | overlap 978094 978103 AAGAGCAAAGTGTTC CTTGGGGAA AATT TTCCCCAGG TAATTTTCTAATGTA CPn0861 979722 - 978922 - | NifU-related protein yfhO_2 980873 - 979719 - | NifS-related aminotransferase pgmA 981514 - 980828 - | phosphoglyceromutase yjbC 981670 - 982377 + | pseudouridine synthase CPn0865 982418 - 982945 + | hypothetical protein birA 983491 - 982913 - | biotin--protein ligase rodA 983423 - 984670 + | rod shape protein zntA 986643 - 984667 - | metal transport P-type ATPase TERM 966 984814 - 984830 + g 70 -3.7 -4.88646 | TAGTGCAAGGTTCTG CGAAACA ACT TTTTTCG TTTGTTTTGCTTTTT TERM 967 986428 - 986416 - G 80 -2.7 -5.5112 | GCCAGCAAGAAAAAA TGTAA ATA CTACA AATAAGTTAGAGAGA CPn0869 987401 - 986655 - | hypothetical protein TERM 968 987298 - 987288 - G 71 -3.2 -5.00642 | opp_overlap 987297 TAAGTGATAGAAAAA CCCT TTA AAGG TTGTATGGGGCTCCC serS 988728 - 987445 - | seryl-tRNA synthetase ribD 988772 - 989902 + | riboflavin deaminase ribA/ribB 989963 - 991219 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein TERM 969 991323 - 991342 + G 73 -2.8 -5.12707 | opp_overlap 991305, overlap 991324 ATGGCTGATGCCCTA GTTTCTGG TACT CAGGAAAC TTTTTTGAAGTTTGG ribH 991233 - 991697 + | riboflavin synthase subunit beta TERM 970 991717 - 991737 + T 95 -14.1 -3.29325 | opp_overlap 991714 991711 991710, overlap 991715 TGTAAGAACGTATAC GTCCCACAA AAT TTGTGGGAC TCTTCCTTCTACAGA CPn0874 993107 - 991746 - | hypothetical protein CPn0875 993372 - 994025 + | hypothetical protein TERM 971 994043 - 994090 + F 71 -3.3 -5.19879 | opp_overlap 994046 994050, overlap 994045 994078 TTCTAAAGCTCTCTA CAACTAAGCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGCCCAGAAG TTTTTCTCTTTGGCC TERM 972 994087 - 994046 - f 91 -12.4 -3.30635 | opp_overlap 994045 994043 994078, overlap 994050 TAAAGCTCTCTACAA CTAAGCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGCCCAG AAGTTTTTCTCTTTG TERM 973 994083 - 994050 - f 90 -11.8 -3.44146 | opp_overlap 994045 994043 994078, overlap 994046 GCTCTCTACAACTAA GCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGC CCAGAAGTTTTTCTC TERM 974 994260 - 994278 + G 78 -10.4 -3.27476 | TTTACAGTTCCACGG GTTAAAGC TCG GCTTTAAC TTGATGCTTCAAAAT TERM 975 995371 - 995381 + G 71 -3.2 -4.95758 | ATGATTTGGGCCTTA TCTG ACA CAGG TTTTTCTGGTATGGT dagA_2 994144 - 995520 + | D-alanine/glycine permease ybcL 995533 - 995985 + | hypothetical protein TERM 976 996012 - 995985 - T 87 -13 -2.81535 | opp_overlap 995988, overlap 995981 995988 TTACGAGAAAAGTTA GAATTTATTCCT CTTC AGGAATAAATTC CTCTCGCTTCTTCCT TERM 977 995988 - 996009 + T 73 -8.9 -3.30854 | opp_overlap 995988 995985 995981 CGAGAAAAGTTAGAA TTTATTCCT CTTC AGGAATAAA TTCCTCTCGCTTCTT TERM 978 996009 - 995988 - T 77 -8.9 -3.543 | opp_overlap 995988, overlap 995985 995981 CGAGAAAAGTTAGAA TTTATTCCT CTTC AGGAATAAA TTCCTCTCGCTTCTT CPn0878 996654 - 995989 - | SET domain protein yycJ 997439 - 996642 - | metal dependent hydrolase TERM 979 997076 - 997060 - G 76 -2.9 -5.34655 | TAATGAAAAATAAAA GCCACAG GAT CTACAGC ATCATGAGGTACATT ftsK 999861 - 997441 - | cell division protein FtsK TERM 980 998583 - 998558 - G 72 -6.1 -4.26344 | overlap 998542 ACAGCTTGAGGAAAA GGTGTGGGAAT TTCA ATACCCACAGC AGCTTTCCCCGGAAT TERM 981 999274 - 999254 - G 71 -3.3 -5.03145 | overlap 999257 CAAGTTTGGAAAAAA GAGCAAAAA GCC TTTTTGACC CCGTCTTGAAAGGTT TERM 982 999516 - 999500 - G 73 -7.3 -4.20516 | CGTGTATCTAATAAA GCAGGAA GCG TTCCTAC TGGAGATAACATGGA TERM 983 999816 - 999794 - G 73 -5.6 -4.56642 | overlap 999795 AAAAATAAATATAAA CTGGCTTTAG CTG CTAAAGGCAA AGTCGGAAGACGAGG TERM 984 1002098 - 1002079 - H 72 -9.2 -2.65808 | opp_overlap 1002094, overlap 1002075 1002076 AGTCGTAACAAGGTA GCCCTACC GGAA GGTGGGGC TGGATCACCTCCTTT TERM 985 1002144 - 1002128 - H 79 -9.5 -3.5002 | overlap 1002124 1002143 TTTAAGGACAAGGAA GGTTGTT TTT AACAACC CGACTAGGTTGGGCA TERM 986 1002471 - 1002489 + H 79 -10.4 -2.81207 | overlap 1002470 1002473 CGAATGGGGCAACCC GATAGACT AAT AGTCTATC ATTATATGTTGAATA TERM 987 1002630 - 1002614 - H 73 -8.1 -3.66803 | opp_overlap 1002613 GGGGAACAGCCTAAA CCATATT TTT AATATGG GGTTGTAGGGTCGAT TERM 988 1002872 - 1002860 - H 78 -7.7 -4.2354 | GAAAGGTGAAAAGAA CCCTT GTT AAGGG AGTGAAATAGAACCT TERM 989 1005551 - 1005571 + H 100 -8.4 -6.21477 | opp_overlap 1005551 TTAAGAATTTCAAAA GAGGATAA TTTTT TTATCCTC TTTTTTTTTGCTGTT TERM 990 1005571 - 1005551 - H 81 -8.4 -4.24123 | opp_overlap 1005551 TTAAGAATTTCAAAA GAGGATAA TTTTT TTATCCTC TTTTTTTTTGCTGTT CPn0881 1005667 - 1006212 + | hypothetical protein CPn0882 1006268 - 1007407 + | hypothetical protein nqr6 1008865 - 1007570 - | Na(+)-translocating NADH-quinone reductase subunit F TERM 991 1008983 - 1008962 - R 100 -13.1 -4.69324 | ACAATAAATAAGAAA TCCCACGAT TTTA ATCGTGGGA TGAAAGTCTCAAAAG yajC 1009359 - 1009006 - | preprotein translocase subunit YajC ygcA 1010635 - 1009430 - | rRNA methyltransferse TERM 992 1010536 - 1010546 + g 79 -3.2 -5.27335 | overlap 1010533 CGAATAACTGATGAA GGAG TTC TTCC TTTTTCTTTAAGGAG TERM 993 1010880 - 1010853 - R 95 -8.5 -5.24129 | TTTGGGCATAAAAAA GAGGATGAGTA GAAAAT TACCCACCCTC TAAACGAAATCAAGC hctA 1011276 - 1010905 - | histone-like developmental protein TERM 994 1010981 - 1011020 + g 84 -3.7 -5.41746 | GATGCAGGTTTAGAA GCTTTGACTGCTTT-GCTA GTTT TAGCTGCAGCAG-CAGAGC TTTTTTTAGGGGCTT TERM 995 1011217 - 1011243 + g 75 -5.8 -4.59251 | opp_overlap 1011217, overlap 1011219 CTCTGCTTTAGCTAA GTCGTGTTGGAT GCT ATCCAGCAGGTC TTTCATTTTTTTTGC TERM 996 1012144 - 1012157 + G 79 -6.7 -4.64766 | opp_overlap 1012139, overlap 1012139 CTGTCACGAATCTTT GCAAG ATCA CTTGC TTTTTGAGCTCTACA TERM 997 1012349 - 1012335 - g 78 -2.2 -5.56264 | overlap 1012336 1012337 TGCAAATAGAAAAAA CTTTTT TGC AAAAAA CACTGCTTGCTTTGC TERM 998 1012735 - 1012747 + G 82 -4.8 -5.28176 | TGAGCATCCCTATTT CCCA GAATA TGGG TTTTTTCTAGGTGCA CPn0887 1011692 - 1014160 + | CHLTR phosphoprotein hemG 1015423 - 1014116 - | protoporphyrinogen oxidase TERM 999 1014558 - 1014542 - G 79 -8 -4.27316 | TTTGGGAAGCGAAAA GTTGGC GTGAT GCCAAC CTAAGCTGATGCTAG TERM 1000 1015301 - 1015321 + g 86 -9.7 -4.03234 | opp_overlap 1015304, overlap 1015304 GGATTCCGTGCGGAC GAAGCCTCC TGC GTAGGCTTC TTTATCTAAAACAAG hemN_2 1016835 - 1015459 - | coproporphyrinogen III oxidase hemE 1017805 - 1016816 - | uroporphyrinogen decarboxylase TERM 1001 1017244 - 1017232 - G 100 -9.1 -4.74706 | opp_overlap 1017242, overlap 1017243 TCGAAGATTCAAAAA GCTGC ACA GCAGC AGCTCCTGCATCCAT TERM 1002 1017585 - 1017573 - G 79 -7.7 -4.35116 | overlap 1017576 TAGGTCACAGCAAAA CCATC CAA GATGG ATAGGATATCAGCAA mfd 1021073 - 1017816 - | transcription-repair coupling TERM 1003 1018243 - 1018253 + gr 100 -6.8 -5.5943 | opp_overlap 1018243 GTGTGTTTTTTTAAA GCTG AAA CAGC TTTTTTTAGTAATTT TERM 1004 1018418 - 1018399 - GR 80 -9.3 -3.64703 | opp_overlap 1018383 TCCTGCTTATTTAAA GCAGCGA GTCGCT TCGCTGC TGGCCCAGACAACCT TERM 1005 1019103 - 1019114 + gr 70 -4.4 -4.70879 | TCCTGAAGCTACTTG CTCA CAGA TGAG TTTTTGCACTTTGGC TERM 1006 1019802 - 1019780 - GR 78 -4.3 -5.10208 | gap 1, opp_overlap 1019788, overlap 1019782 GAATCGGAACAAAAA CTTCTTCAGT AGTC ACTGAA-AAG TGAGTGCGTTGTTTT alaS 1023661 - 1021043 - | alanyl-tRNA synthetase TERM 1007 1021253 - 1021275 + gH 81 -9.3 -3.88001 | AATATATTTCCCATT TTTCTCTGT TGTCC ACAGAGAAA TTAGTTTTTCTGGAA TERM 1008 1021413 - 1021425 + gH 73 -7.7 -3.82519 | overlap 1021411 AACTTGTCTAATTTT GTCTG AAT CAGAC TGTTTTCTAACTCAT TERM 1009 1023369 - 1023324 - GH 70 -5.6 -4.38876 | gap 2, opp_overlap 1023336 TTAAAAACAGATAAA GAGACTTCCC-AA-GCAAAGGC AATC GCCTCTGCTTTAAAGTAGTCTC CGAAAGAAAAATTCC TERM 1010 1023336 - 1023355 + gH 71 -7.8 -3.63068 | opp_overlap 1023324 AAAGAGACTTCCCAA GCAAAGGC AATC GCCTCTGC TTTAAAGTAGTCTCC TERM 1011 1024104 - 1024120 + G 73 -8.7 -3.45756 | overlap 1024102 CGGTTTGTCTTGTCA GCAGGTC ATG GATCTGC TCTTCTCTATTCTTG tktB_1 1023894 - 1025891 + | transketolase amn 1026766 - 1025885 - | AMP nucleosidase TERM 1012 1026197 - 1026187 - G 73 -5.4 -4.7254 | opp_overlap 1026187 ATCCGGCAGCAAAAA GTGT CGC ACAC TCCATTTCAGCGGAT efp_2 1026988 - 1027560 + | elongation factor P TERM 1013 1027574 - 1027585 + F 71 -3 -5.05782 | AGATTGCCGTTGTAG GAAA AGTA TTTC TTTTTTACAGTGCGT TERM 1014 1027707 - 1027693 - g 70 -5.7 -4.25256 | opp_overlap 1027692 1027703, overlap 1027703 TCTTGATGAAAAGAA CAAGC GCAAA GCTTG GGTTGCTAAGCTTGT CPn0896 1027595 - 1027825 + | hypothetical protein CPn0897 1028737 - 1027850 - | phosphohydrolase groEL_3 1030460 - 1028901 - | heat shock protein-60 TERM 1015 1029663 - 1029680 + g 79 -8.5 -4.15044 | GGTGACTACAGTTAC TTGCAAG AGCC CTTGCAA TTTGTTAACAACAAG TERM 1016 1031586 - 1031596 + G 85 -4 -5.45802 | TGTTCTCCTACTGCC GAAA AAT TTTC TTTTTCTTTTAACGA murF 1030875 - 1032218 + | Muramoyl-DAP ligase mraY 1032235 - 1033284 + | phospho-N-acetylmuramoyl-pentapeptide-transferase murD 1033287 - 1034540 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase nlpD 1034543 - 1035244 + | muramidase ftsW 1035263 - 1036420 + | cell division protein FtsW murG 1036326 - 1037399 + | N-acetylglucosaminyl transferase TERM 1017 1037376 - 1037393 + F 75 -8.5 -3.45536 | ACAAAAACATTCCAT GCATTCA TTTG TGAATGC TTATAGGTTCATTAT TERM 1018 1038432 - 1038450 + G 78 -7.4 -4.57073 | CGTGATGCTGTGGGT TTGCGAAG AGT CATCGCAA TTTTTCAACCACATC TERM 1019 1038668 - 1038652 - g 71 -9.5 -2.91264 | TTCCCCATGGAGACA TCGTAGA TTA TCTACGA AACTACATTCGCATT murC/ddlA 1037409 - 1039838 + | muramate-Ala ligase & D-Ala-D-Ala ligase TERM 1020 1039874 - 1039847 - T 100 -7.9 -5.94214 | opp_overlap 1039847 AAGATAATAAAAAAA CTAGAGATCTT TTTATT AAAATCTCTAG TTTTTACATGTAAAC TERM 1021 1039847 - 1039874 + T 74 -5.7 -4.70659 | opp_overlap 1039847 AAGATAATAAAAAAA CTAGAGATCTT TTTATT AAAATCTCTAG TTTTTACATGTAAAC CPn0906 1040340 - 1039912 - | hypothetical protein TERM 1022 1040389 - 1040378 - R 93 -3 -6.04953 | opp_overlap 1040378 ATAGAAAGAAAAAAA CATA ACTC TATG TTTTTAAAGTTCCTG cutA 1040780 - 1040442 - | periplasmic divalent cation tolerance protein CPn0908 1041589 - 1040777 - | hypothetical protein TERM 1023 1041101 - 1041085 - G 82 -2.3 -5.71712 | CTTGAGAGAAAAAAA TCTGA GGGAGAT TCAGA GAGGGGAAGTACGGT rsbV_2 1041637 - 1041969 + | sigma regulatory factor miaA 1041979 - 1043007 + | tRNA delta(2)-isopentenylpyrophosphate transferase CPn0911 1044043 - 1042982 - | hypothetical protein TERM 1024 1043464 - 1043450 - G 78 -10 -3.53012 | opp_overlap 1043446 1043450 TGCTGTTGTGCGAAA GCCCAT GAG ATGGGC TAACTTATGTAGATT TERM 1025 1043450 - 1043464 + g 71 -10 -2.63823 | opp_overlap 1043450, overlap 1043446 TGCTGTTGTGCGAAA GCCCAT GAG ATGGGC TAACTTATGTAGATT TERM 1026 1043482 - 1043499 + g 95 -5.5 -5.75342 | overlap 1043484 ACTTATGTAGATTGA TCCAGCC CCCA GGCTGCA TTTTTTTTGGAGAGA CPn0912 1044129 - 1045763 + | hypothetical protein CPn0913 1045760 - 1045948 + | hypothetical protein CPn0914 1045999 - 1046400 + | hypothetical protein TERM 1027 1046534 - 1046554 + G 70 -7.7 -3.63968 | overlap 1046529 AAGGGAATAATCTGG TTGTTCTAG ATG TTAGAACAA TTTCGGAATTTACCG ybeB 1046461 - 1046820 + | iojap superfamily protein fabF 1046837 - 1048087 + | 3-oxoacyl-(acyl carrier protein) synthase II CPn0917 1048090 - 1048542 + | hydrolase/phosphatase-like protein TERM 1028 1048539 - 1048579 + T 87 -11.3 -3.17392 | opp_overlap 1048553, overlap 1048544 CTATCTTTTCTCTTC TTGATTTTCAAGGAGAGGG AAC CCCTCTCCTTAGACATTAA TTCACTTCAGCAGTG TERM 1029 1048544 - 1048575 + T 87 -11 -3.4052 | gap 1, opp_overlap 1048553, overlap 1048539 TTTTCTCTTCTTGAT TTTC-AAGGAGAGGG AAC CCCTCTCCTTAGACA TTAATTCACTTCAGC TERM 1030 1048565 - 1048553 - T 72 -9.1 -2.72344 | opp_overlap 1048544 1048539 CTTGATTTTCAAGGA GAGGG AAC CCCTC TCCTTAGACATTAAT ppa 1049223 - 1048576 - | inorganic pyrophosphatase TERM 1031 1048895 - 1048909 + g 84 -2.8 -5.71712 | opp_overlap 1048895, overlap 1048897 GCTTGAAGTAAAATA TTTCCA TGA TGGATA TTTTTTTCTGTAAGA TERM 1032 1048897 - 1048907 + g 70 -5.4 -4.50122 | opp_overlap 1048895, overlap 1048895 TTGAAGTAAAATATT TCCA TGA TGGA TATTTTTTTCTGTAA TERM 1033 1050025 - 1050000 - g 70 -7.5 -3.86897 | opp_overlap 1050002 CTGATGTTTTAGAAA GAGCCGTTCAG GATG CTGCAAGGCTC TATGGGGCTACGATT ldh 1049378 - 1050433 + | leucine dehydrogenase cysQ 1051405 - 1050428 - | sulfite synthesis/biphosphate phosphatase CPn0921 1051535 - 1052296 + | snglycerol-3-P acyltransferase TERM 1034 1053572 - 1053591 + G 71 -5 -4.58395 | GAGATTTGGGTCATA TAGGTCCT AGCG GGGATCTA TTTTTAGAAGGTAGG aas 1052314 - 1053930 + | long chain fatty acid--[acyl-carrier-protein] ligase TERM 1035 1054122 - 1054110 - gT 72 -9.1 -2.64099 | opp_overlap 1054109 1054110 1054117 1054118, overlap 1054109 TTTCCTCATGAGAAG CTCGG GAT CCGAG GTTCTCGGCTTATGG TERM 1036 1054110 - 1054122 + GT 72 -9.1 -2.62653 | opp_overlap 1054110 1054109, overlap 1054109 1054117 1054118 TTTCCTCATGAGAAG CTCGG GAT CCGAG GTTCTCGGCTTATGG TERM 1037 1054118 - 1054130 + GT 72 -9.1 -2.64218 | opp_overlap 1054110 1054109, overlap 1054110 1054109 1054117 TGAGAAGCTCGGGAT CCGAG GTT CTCGG CTTATGGTAGGGCCT priA 1057274 - 1055025 - | primosome assembly protein PriA bioF_1 1053984 - 1055096 + | 8-amino-7-oxononanoate synthase CPn0925 1057900 - 1057223 - | hypothetical protein TERM 1038 1057968 - 1057985 + H 71 -5.7 -4.4767 | opp_overlap 1057971 AGAGCTCTCTGTGGA TAAGAAT TTCT ATTCTTA TTTTATCCTAAATCA CPn0926 1058060 - 1058560 + | thioredoxin disulfide isomerase CPn0927 1059809 - 1058667 - | CHLPS 43 kDa protein homolog_2 TERM 1039 1058837 - 1058847 + g 75 -5.4 -4.78848 | overlap 1058834 GCTCTAGAAAAGGTG TTGC TAC GCAA TTTTCTCTTTCGAAG CPn0928 1061008 - 1059881 - | CHLPS 43 kDa protein homolog_3 TERM 1040 1061206 - 1061223 + r 78 -6.9 -4.29302 | overlap 1061208 1061212 GCTTTTTCAAAATTG GTGTGGC AAGA GCCACTC TTGTTTTGCTGTCGA CPn0929 1062292 - 1061183 - | CHLPS 43 kDa protein homolog_4 TERM 1041 1061208 - 1061221 + g 72 -8.1 -3.74088 | overlap 1061206 1061212 TTTTTCAAAATTGGT GTGGC AAGA GCCAC TCTTGTTTTGCTGTC TERM 1042 1061212 - 1061226 + g 82 -8.6 -4.3586 | overlap 1061208 1061206 TCAAAATTGGTGTGG CAAGAG CCA CTCTTG TTTTGCTGTCGATGG TERM 1043 1061790 - 1061771 - G 79 -10.8 -3.14211 | opp_overlap 1061780, overlap 1061780 ATTGGCCCCTATCAA CTTGGCAA ATCT TTGCCAAG AATCAAAGATCTCCT TERM 1044 1062420 - 1062439 + H 84 -6.4 -5.09762 | overlap 1062422 CAGGCTTCAATGTCT GTCCACAA AAGT TTGTGGTC TTTTCTTTATTGCCA TERM 1045 1062422 - 1062437 + H 78 -7.6 -4.16668 | overlap 1062420 GGCTTCAATGTCTGT CCACAA AAGT TTGTGG TCTTTTCTTTATTGC CPn0930 1062857 - 1063333 + | hypothetical protein TERM 1046 1063564 - 1063582 + F 73 -9 -3.26719 | overlap 1063567 CTTCTGGCTATACGG GAATGTTT TTC AAACATTC TTAAGTCTTTGTCCG TERM 1047 1064911 - 1064901 - g 73 -5.4 -4.63218 | opp_overlap 1064907 1064909 1064910 TCGCTTTGAAGAAAA TCCT AGT AGGA GGAGCTCCTCGTATT lysS 1064138 - 1065721 + | lysyl-tRNA synthetase cysS 1067142 - 1065718 - | cysteinyl-tRNA synthetase TERM 1048 1067153 - 1067167 + rH 76 -6.4 -4.55093 | opp_overlap 1067145 GCCATAACTGTATCA CTCTTG ACT CAGGAG TTTGTTGTTATATAG TERM 1049 1067689 - 1067724 + Gr 82 -4.8 -5.37345 | gap 1, opp_overlap 1067693 1067695, overlap 1067692 1067695 ATCAGGAGGCTTTGC AAAAGAGCAA-GGAAGC AGA GCTTCCTTTGCTTGTTA TTTTTTCTGGTTCCG TERM 1050 1067692 - 1067721 + Gr 80 -6.5 -4.75967 | gap 1, opp_overlap 1067693 1067695, overlap 1067689 1067695 AGGAGGCTTTGCAAA AGAGCAA-GGAAGC AGA GCTTCCTTTGCTTG TTATTTTTTCTGGTT TERM 1051 1067720 - 1067693 - gR 76 -7.8 -4.08216 | gap 1, opp_overlap 1067692 1067689 1067695, overlap 1067695 GGAGGCTTTGCAAAA GAGCAA-GGAAGC AGA GCTTCCTTTGCTT GTTATTTTTTCTGGT TERM 1052 1067718 - 1067695 - gR 86 -10.4 -3.63922 | gap 1, opp_overlap 1067692 1067689 1067695, overlap 1067693 AGGCTTTGCAAAAGA GCAA-GGAAGC AGA GCTTCCTTTGC TTGTTATTTTTTCTG TERM 1053 1067695 - 1067718 + Gr 100 -10.4 -4.44307 | gap 1, opp_overlap 1067695 1067693, overlap 1067692 1067689 AGGCTTTGCAAAAGA GCAA-GGAAGC AGA GCTTCCTTTGC TTGTTATTTTTTCTG rnpA 1068942 - 1068523 - | ribonuclease P CPn0933 1067535 - 1068581 + | disulfide bond isomerase rpmH 1069091 - 1068954 - | 50S ribosomal protein L34 rpmJ 1069336 - 1069473 + | 50S ribosomal protein L36 rpsN 1069496 - 1069801 + | 30S ribosomal protein S14 CPn0938 1070322 - 1069846 - | hypothetical protein CPn0939 1070728 - 1071198 + | hypothetical protein uvrC 1073012 - 1071201 - | excinuclease ABC subunit C mutS 1075501 - 1073015 - | DNA mismatch repair protein TERM 1054 1073140 - 1073126 - G 70 -7.1 -3.75418 | CACACAAAGGGGAAA GCCAG CAAGC CTGGC GACATGAATGCCGAA TERM 1055 1073208 - 1073197 - G 78 -5.8 -4.84311 | opp_overlap 1073196 1073197 TCTCATATAAGAAAA CAGG CTGC CCTG CTTTATCTTTAACTC TERM 1056 1074444 - 1074462 + g 73 -5.3 -4.64361 | opp_overlap 1074444 AGTCGTTCGATATCA CGTACTT GACAA AGGTACG TTTTGATATTTTTTC TERM 1057 1075190 - 1075206 + g 89 -3.5 -5.62219 | opp_overlap 1075188, overlap 1075191 AAATCTCTGAATATC CCGGGCC ATG GGACCGA TTTTTTTACTCTCTT TERM 1058 1076531 - 1076519 - g 74 -7.7 -4.03219 | opp_overlap 1076519 1076518 ATCTCACAAGAACAA CTGCA TAC TGCAG GGTTTTTTGGGAATA TERM 1059 1076613 - 1076626 + G 70 -5.3 -4.57569 | GACATACCATTGGAT TTTCC GCTA GGAAA TTTTTAGAAAACTCC TERM 1060 1077343 - 1077353 + G 79 -3.2 -5.28176 | GGAAACAGATATCTT GCGT TGT ATGC TTTTTTGTGGATCCA dnaG 1075985 - 1077757 + | DNA primase TERM 1061 1077766 - 1077780 + F 72 -5.8 -4.36508 | TCCTTAACCCAGCTC TTCTTT TGT AAAGAA TTCTTGTTTTTCTAA CPn0943 1077978 - 1078241 + | hypothetical protein CPn0944 1078512 - 1079000 + | hypothetical protein CPn0945 1079070 - 1079663 + | hypothetical protein TERM 1062 1079686 - 1079721 + T 100 -20.6 -4.08939 | opp_overlap 1079671 1079686 1079690, overlap 1079690 CTTCCCTTAATAAAA GAAAGCGCTCGTAGGA TTCC TCCCACGAGCGCTTTC TTTATCTAAATGTTA TERM 1063 1079721 - 1079686 - T 100 -22.8 -4.63218 | opp_overlap 1079686 1079690, overlap 1079671 1079690 CTTCCCTTAATAAAA GAAAGCGCTCGTAGGA TTCC TCCCACGAGCGCTTTC TTTATCTAAATGTTA TERM 1064 1079717 - 1079690 - T 100 -17.8 -4.87892 | opp_overlap 1079686 1079690, overlap 1079686 CCTTAATAAAAGAAA GCGCTCGTAGGA TTCC TCCCACGAGCGC TTTCTTTATCTAAAT TERM 1065 1079690 - 1079717 + T 100 -15.6 -4.63044 | opp_overlap 1079690 1079686, overlap 1079686 CCTTAATAAAAGAAA GCGCTCGTAGGA TTCC TCCCACGAGCGC TTTCTTTATCTAAAT glyQ 1082786 - 1079742 - | glycyl tRNA synthetase TERM 1066 1084045 - 1084030 - g 75 -3.3 -5.11836 | AGAGCTAAAACAAAA GATTC AGAAAA GAATC ATGAGAGTAAAGATT pgsA_2 1083442 - 1084062 + | glycerol-3-P phosphatydyltransferase glgA 1085474 - 1084044 - | glycogen synthase TERM 1067 1084157 - 1084142 - G 80 -9 -3.98173 | TCAAATTCAACCAAA CGTCAG GCTC CTGACG ATACGTCGTTACAGC TERM 1068 1085138 - 1085125 - G 70 -8.1 -3.65812 | overlap 1085126 GCTTCTTGAAGATAA GCTGC AGCT GCAGC TGCAAAAGCAGAGAA ctc 1085929 - 1086486 + | 50S ribosomal protein L25/general stress protein Ctc TERM 1069 1086634 - 1086648 + G 73 -8.6 -3.6279 | opp_overlap 1086636 ATGCCATGCTTTAAT GACTCT CGT AGAGTC TTCTTCAGGGCCTTT pth 1086488 - 1087030 + | peptidyl-tRNA hydrolase rpsF 1087122 - 1087460 + | 30S ribosomal protein S6 rpsR 1087478 - 1087726 + | 30S ribosomal protein S18 TERM 1070 1087880 - 1087853 - g 82 -3.4 -5.45652 | gap 1, opp_overlap 1087867 1087868 ATCCCTAAGAAAAAA GCAGTGATTGCTG GTG CAGGAA-CTCTGC GTTTACAAGCTAAAC TERM 1071 1088187 - 1088153 - g 79 -7.9 -4.29139 | TTAAAGCTAAAAGAA GAAGTAACCGCAACC TTATT GGTCGAAGTTACCTC TGACAATGAATACGT rplI 1087742 - 1088251 + | 50S ribosomal protein L9 TERM 1072 1088670 - 1088683 + F 95 -2.4 -6.59152 | overlap 1088664 TGGGCTCGAGAAATC GGAA GCGATG TTCC TTTTTTTTTTCTTCA TERM 1073 1088909 - 1088891 - f 88 -7.5 -4.89339 | AATGATCTAGAAAAA TCCGTAT TTCGT ATACGGA CAGACTTGAAAAATA TERM 1074 1089372 - 1089385 + F 87 -2.4 -6.09196 | ACCCTCACATTCTCT TCCT ACTTAA AGGA TTTTTTTATTTTAAA CPn0956 1089560 - 1090912 + | hypothetical protein TERM 1075 1090961 - 1090921 - T 100 -18.7 -3.63425 | opp_overlap 1090926 1090930, overlap 1090926 1090930 CAGGTAAACTAAAGA TAAAACAAAGGCATAAGAT ATG ATCTTATGCCTTTGTTTTT AAGAGGTCTTCTGAG TERM 1076 1090926 - 1090956 + T 100 -18.6 -4.59511 | opp_overlap 1090926 1090921 1090930, overlap 1090930 AAACTAAAGATAAAA CAAAGGCATAAGAT ATG ATCTTATGCCTTTG TTTTTAAGAGGTCTT TERM 1077 1090956 - 1090926 - T 100 -18.6 -4.85894 | opp_overlap 1090926 1090930, overlap 1090921 1090930 AAACTAAAGATAAAA CAAAGGCATAAGAT ATG ATCTTATGCCTTTG TTTTTAAGAGGTCTT TERM 1078 1090952 - 1090930 - T 100 -13.6 -4.91778 | opp_overlap 1090926 1090930, overlap 1090926 1090921 TAAAGATAAAACAAA GGCATAAGAT ATG ATCTTATGCC TTTGTTTTTAAGAGG TERM 1079 1090930 - 1090952 + T 100 -13.6 -4.85782 | opp_overlap 1090930 1090926 1090921, overlap 1090926 TAAAGATAAAACAAA GGCATAAGAT ATG ATCTTATGCC TTTGTTTTTAAGAGG ide 1093788 - 1090960 - | insulinase family/protease III TERM 1080 1092568 - 1092552 - G 78 -9.5 -3.59946 | TGCCCAAGGATACAA TCTGCTT ACA AAGCAGA TCAAACAATGGACTT TERM 1081 1093287 - 1093297 + g 73 -5.4 -4.60797 | CAGCGAATTCTTGAT GTAC TGC GTAC TTTTCTCTATCAAGA plsB 1094785 - 1093790 - | glycerol-3-P acyltransferase TERM 1082 1094722 - 1094710 - G 77 -6.3 -4.73388 | overlap 1094697 AATTCTGATGAAAAA CAGAA AAT TTCTG ATATAAAGGCTCTGG cafE 1096343 - 1094796 - | axial filament protein TERM 1083 1095892 - 1095878 - G 84 -10 -3.86822 | opp_overlap 1095877 1095876 1095880 CAATTTTTCGAGAAA CACCTC GGT GAGGTG AGTTTGGTAAAAGTA CPn0960 1096764 - 1097105 + | hypothetical protein rpmF 1097118 - 1097300 + | 50S ribosomal protein L32 TERM 1084 1097347 - 1097364 + G 76 -7.7 -4.08557 | GCATAGATTTAATGG GAGGGGA CCAT TCTCCTC TTGTTGTTTGGCAAG plsX 1097316 - 1098278 + | putative glycerol-3-phosphate acyltransferase PlsX pmp_21 1098398 - 1103227 + | putative outer membrane protein D TERM 1085 1103259 - 1103277 + T 100 -11.8 -5.7827 | opp_overlap 1103259 TTCAATCAAAAAAAA GGGTTACT TTT AGTAACCC TTTTTTATTTCTCTT TERM 1086 1103277 - 1103259 - T 100 -11.8 -5.95166 | opp_overlap 1103259 TTCAATCAAAAAAAA GGGTTACT TTT AGTAACCC TTTTTTATTTCTCTT CPn0964 1104758 - 1103298 - | hypothetical protein TERM 1087 1104336 - 1104326 - G 73 -5.4 -4.59773 | overlap 1104330 TGTTATCCTCAAAAA GCAA CGC TTGC AAAGCGAAAATGAAG TERM 1088 1104342 - 1104330 - G 72 -7.7 -3.81256 | overlap 1104326 ATCCTCAAAAAGCAA CGCTT GCA AAGCG AAAATGAAGGGTTGA TERM 1089 1104620 - 1104636 + g 77 -6.5 -4.63932 | overlap 1104609 1104621 GAGCCACGTTGGTTA GGCGTGT TTG ACACGCA TTTTCTTCCAAGATA TERM 1090 1104621 - 1104635 + g 76 -10 -3.37877 | overlap 1104609 1104620 AGCCACGTTGGTTAG GCGTGT TTG ACACGC ATTTTCTTCCAAGAT TERM 1091 1104806 - 1104824 + r 72 -2.5 -5.27938 | TTATACTTTCTAAGA TTGATTG TTATT CAATTAA TTTTTATTTAGAAAT TERM 1092 1104887 - 1104899 + r 71 -6.3 -4.17048 | TATACTTATTTATGA GTTCT TAA AGAAC TTGTTTTAAGAAACC lpxB 1106736 - 1104922 - | lipid-A-disaccharide synthase pcnB_2 1108037 - 1106745 - | Poly A polymerase TERM 1093 1107049 - 1107031 - G 70 -7.6 -3.73072 | AATTGTTCTAGGAAA TTTTTGAT ATA ATCAAAAA CGGATGTCAAAGACA pgm 1108512 - 1109888 + | phosphoglucomutase TERM 1094 1111118 - 1111131 + G 71 -6.7 -4.10257 | AAAGGCTTTTACCTC GCAAC TCTT GTTGC TTGTGTTTTTGGGTT glmS 1109895 - 1111724 + | D-fructose-6-phosphate amidotransferase TERM 1095 1111894 - 1111906 + G 87 -6.2 -5.08824 | CAGTTCCTGTATTGA CCGC AAAAG GCGG TTTTTTCCCTGCAAC TERM 1096 1111955 - 1111965 + G 75 -8.2 -3.85389 | CTGGCTTTTTTCTAT GGCC TCA GGCC TTTGCCTTCTTGAAG tyrP_1 1111812 - 1113002 + | tyrosine transporter TERM 1097 1113177 - 1113195 + G 71 -2.4 -5.098 | overlap 1113178 CCCTGGGTCTTTATT TTTCTGGA TTA TACAGAAG TTTATTTTCTTTTTG yccA_1 1113053 - 1113373 + | transport permease (truncated) TERM 1098 1113543 - 1113555 + G 87 -6.2 -5.08824 | CAGTTCCTGTATTGA CCGC AAAAG GCGG TTTTTTCCCTGCAAC TERM 1099 1113604 - 1113614 + G 75 -8.2 -3.85389 | CTGGCTTTTTTCTAT GGCC TCA GGCC TTTGCCTTCTTGAAG tyrP_2 1113461 - 1114651 + | tyrosine transporter TERM 1100 1114826 - 1114844 + G 71 -2.4 -5.098 | overlap 1114827 CCCTGGGTCTTTATT TTTCTGGA TTA TACAGAAG TTTATTTTCTTTTTG TERM 1101 1115379 - 1115389 + G 70 -5.4 -4.55023 | CATGGTATTTTGGTA TCTG CTG CAGA TTTTCTCATCTTCAG yccA_2 1114702 - 1115418 + | transport permease ftsY 1116299 - 1115427 - | cell division protein FtsY sucC 1116370 - 1117530 + | succinyl-CoA synthetase subunit beta sucD 1117544 - 1118425 + | succinyl-CoA synthetase subunit alpha TERM 1102 1119392 - 1119412 + G 78 -4 -5.1861 | overlap 1119378 GGTAAACGAAACCTT GTGCGT TTACTTCTC ACGCAC TTTTTTAATCCTCCA CPn0975 1119104 - 1119640 + | hypothetical protein TERM 1103 1120045 - 1120019 - f 74 -6.8 -4.39226 | opp_overlap 1120019 1120018 1120016 1120031 1120040, overlap 1120016 1120034 ATAATTATAAAATAA TTTACTTTTTAA TAA TTAAAATGTAAA CTGTTTGCACTTTAA TERM 1104 1120145 - 1120132 - g 74 -9.5 -3.28219 | overlap 1120130 AACTTCACCAGAACA CCGCC TGAT GGCGG CATTAGACCGTTGGT TERM 1105 1121111 - 1121123 + G 75 -3.3 -5.18371 | AGCTCATTCACTATG CGTGG TAA CCAAG TTTTATTTTATACCA CPn0976 1120082 - 1121188 + | hypothetical protein CPn0977 1121371 - 1122405 + | hypothetical protein CPn0978 1122665 - 1123696 + | hypothetical protein TERM 1106 1125348 - 1125330 - g 73 -2.5 -5.10064 | gap 1, overlap 1125331 1125333 GTGAATAGACAAAAA GTATCTTC GATT GAAGAT-C TGAATAGAACGTTAA htrA 1123980 - 1125446 + | DO Serine protease TERM 1107 1125507 - 1125480 - T 71 -7.8 -3.5511 | opp_overlap 1125481 1125484, overlap 1125478 1125481 1125484 TTTGATTCATAAAGA GGAATGAAGAGA GTTC TCTCTTCACTCT TTTATTTTAGGAAGC TERM 1108 1125481 - 1125506 + T 100 -9.1 -5.07652 | opp_overlap 1125480 1125478 1125481 1125484, overlap 1125484 TTGATTCATAAAGAG GAATGAAGAGA GTTC TCTCTTCACTC TTTTATTTTAGGAAG TERM 1109 1125506 - 1125481 - T 83 -11.3 -2.72745 | opp_overlap 1125481 1125484, overlap 1125480 1125478 1125484 TTGATTCATAAAGAG GAATGAAGAGA GTTC TCTCTTCACTC TTTTATTTTAGGAAG TERM 1110 1125503 - 1125484 - T 79 -9.4 -3.50737 | opp_overlap 1125481 1125484, overlap 1125481 1125480 1125478 ATTCATAAAGAGGAA TGAAGAGA GTTC TCTCTTCA CTCTTTTATTTTAGG TERM 1111 1125484 - 1125503 + T 74 -9.4 -3.08754 | opp_overlap 1125484 1125481 1125480 1125478, overlap 1125481 ATTCATAAAGAGGAA TGAAGAGA GTTC TCTCTTCA CTCTTTTATTTTAGG CPn0980 1126982 - 1125501 - | hypothetical protein TERM 1112 1127422 - 1127440 + G 86 -10.4 -3.90112 | ACGCCGTGTTTCATC CTTTGCTT ACC AAGCAAAG TTTCCTTCAAGAGGC TERM 1113 1129353 - 1129377 + G 74 -10.1 -3.15544 | opp_overlap 1129353 1129360, overlap 1129360 CCAAGTATAAACTTA TATGTAACCTC TCG GGGGTTGCATA TTCCTGCACGTGCAG TERM 1114 1129714 - 1129739 + G 82 -8.3 -4.4009 | gap 1 TGGATATGCCCGTAG CGCCA-GGAAGC CGT GCTTCCGTAGCG TTTTATAGGCTAAAA CPn0981 1127031 - 1129955 + | zinc metalloprotease yigN 1131194 - 1129959 - | hypothetical protein pssA 1132000 - 1131203 - | glycerol-Serine phosphatidyltransferase TERM 1115 1133025 - 1133012 - g 70 -8.1 -3.64466 | ATTTTATATAGAGAA GCTCG TGCA CGAGC CCGTGCTAATAAAGA TERM 1116 1135457 - 1135437 - g 71 -9.7 -2.57916 | overlap 1135436 TGAAAAATAAATCAG CGTCCACAA GTA TTGTGGTCG AAAGAAAAACAACCC nrdA 1132379 - 1135513 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1117 1136102 - 1136132 + G 76 -7 -4.51699 | overlap 1136093 1136103 TAGTAGGATACTATA TCATTATGGAAGGA ATC TTCTTCTATAGTGG TTTTGTAATGATTCT TERM 1118 1136289 - 1136268 - g 70 -2.9 -5.03961 | overlap 1136269 1136270 AATTAAAGAAGAAAA CCCCGAAGT TTGG ACTACGGAA CTACAAGAAGAAATC TERM 1119 1136533 - 1136517 - g 77 -3.7 -5.09762 | opp_overlap 1136512, overlap 1136512 1136520 1136531 1136532 TCTGAATAAAGAAAA GAATTTC TTT GAAACCC GGGTTACCGAATACC nrdB 1135534 - 1136574 + | ribonucleotide-diphosphate reductase subunit beta TERM 1120 1136597 - 1136629 + F 100 -10.7 -4.70879 | overlap 1136599 TCTTTTTCAAGGGAG TTTTGAGAGATGGTC TTA GATCGTCTCTCAGGA TTTTTCAGCTTTCCC TERM 1121 1136599 - 1136627 + F 81 -11.1 -2.6436 | overlap 1136597 TTTTTCAAGGGAGTT TTGAGAGATGGTC TTA GATCGTCTCTCAG GATTTTTCAGCTTTC TERM 1122 1136951 - 1136965 + G 93 -10 -4.26903 | TCAAGTACTTTGGAT CGCTGT GGA ACAGCG TTTTGATAGGGTAAG trmB 1136724 - 1137398 + | tRNA (guanine-N(7))-methyltransferase TERM 1123 1138054 - 1138068 + G 90 -4.2 -5.61881 | ATGTAGCGAATCGGT GTCGAG CCC CTAGAC TTTTTATTTTTCAGA ytgB_2 1137516 - 1138118 + | YtgB-like rRNA methylase murB 1138986 - 1138072 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1124 1138609 - 1138599 - G 82 -6.8 -4.87665 | CTGCATTCATAAAAA TGGC CCC GCCA ACCGACCCAGGGATG nusB 1139495 - 1139013 - | transcription antitermination protein NusB TERM 1125 1140161 - 1140144 - g 72 -6.3 -4.30995 | GTGCGCATAAAAGAA GTTAAGC TTAA GCCTAAC ATAGACGAAAATGAT infC 1139883 - 1140443 + | translation initiation factor IF-3 rpmI 1140421 - 1140615 + | 50S ribosomal protein L35 rplT 1140634 - 1140999 + | 50S ribosomal protein L20 TERM 1126 1140989 - 1140979 - f 79 -5.4 -5.07053 | opp_overlap 1140980, overlap 1140980 AACCAGGCTAAAAAA GCTT TGG AAGC CACAGTTTAGGGATT TERM 1127 1141158 - 1141128 - g 80 -2.6 -5.53991 | overlap 1141132 TACTTAGGAAAAAAA GGAATTTTTCGGAG TTT CTCAGAAAAATTAA AGCAATGTACAGATA TERM 1128 1141154 - 1141132 - g 74 -7.8 -4.06295 | overlap 1141128 TAGGAAAAAAAGGAA TTTTTCGGAG TTT CTCAGAAAAA TTAAAGCAATGTACA TERM 1129 1141581 - 1141557 - g 73 -5.8 -4.56702 | opp_overlap 1141580 CGTGAACTAAAGAAA CAACAACCTC CAATC AAAGTTGTTG CCCCCGGCCTATGTT TERM 1130 1141633 - 1141651 + G 73 -3.8 -4.99035 | overlap 1141634 CACGTTCTCATGTGC TCTTCCAT CAA GTGGAAGC TTTTTATGTAGATCA pheS 1141014 - 1142033 + | phenylalanyl-tRNA synthetase subunit alpha TERM 1131 1142155 - 1142175 + F 79 -8.3 -4.06384 | opp_overlap 1142154 1142150, overlap 1142156 TTCCGATAGAGGAAC TTTGTGGCT AAG AGCCACGAG TTTCTGGTATTCAAC TERM 1132 1142156 - 1142174 + F 77 -9.6 -3.03348 | opp_overlap 1142154 1142150, overlap 1142155 TCCGATAGAGGAACT TTGTGGCT AAG AGCCACGA GTTTCTGGTATTCAA TERM 1133 1144045 - 1144034 - g 88 -3 -5.7946 | TTGCTAAGAAAAAAA TTCT ATTC AGAA ATGATAAGCTTTTGC CPn0994 1142398 - 1144443 + | hypothetical protein CPn0995 1145512 - 1144412 - | hypothetical protein TERM 1134 1145050 - 1145083 + g 93 -13.3 -2.82491 | opp_overlap 1145056, overlap 1145052 1145056 CTGTTTGATCTTTGA GGTAAAGAGCAGGAA TTTT TCCCTGCTCTTTATC TGTCGTGCCTCTATC TERM 1135 1145052 - 1145081 + g 93 -12.3 -2.95774 | opp_overlap 1145056, overlap 1145050 1145056 GTTTGATCTTTGAGG TAAAGAGCAGGAA TTTT TCCCTGCTCTTTA TCTGTCGTGCCTCTA TERM 1136 1145056 - 1145077 + g 83 -8.7 -4.1523 | opp_overlap 1145056, overlap 1145052 1145050 GATCTTTGAGGTAAA GAGCAGGAA TTTT TCCCTGCTC TTTATCTGTCGTGCC TERM 1137 1145077 - 1145056 - G 84 -10.9 -3.6502 | opp_overlap 1145056 1145052 1145050 GATCTTTGAGGTAAA GAGCAGGAA TTTT TCCCTGCTC TTTATCTGTCGTGCC CPn0996 1146589 - 1145516 - | hypothetical protein TERM 1138 1146012 - 1146027 + g 74 -4 -4.98255 | ACAGTATCTTTAGTA GTGTCA GGGA TGATAC TTTTTATAATTCCCA TERM 1139 1146122 - 1146139 + g 80 -3.5 -5.37043 | ATGATCTACAGCGAT GAAAATA CGAT TGTTTTC TTTTTTCTGTAGAGT TERM 1140 1146752 - 1146785 + G 75 -9.1 -3.58518 | opp_overlap 1146752, overlap 1146750 TGATAAGCAATTAGA TCTTTTTTTTGCTTC TTTA GATGTAAAAAAAAGA TATTTGCTTGCTCTT mesJ 1146708 - 1147667 + | PP-loop superfamily ATPase TERM 1141 1148520 - 1148504 - g 73 -5.1 -4.64766 | CTGAGACGCTAAAAA GAGAACT TAA AGATCTC TACCAGCAAGTGGAA TERM 1142 1149301 - 1149315 + G 71 -3.4 -4.92314 | overlap 1149303 AAGGCTGTATCTGGA GAGGCG GAC CGTCCC TTTTTCTCCATTGCT ftsH 1147855 - 1150587 + | ATP-dependent zinc protease TERM 1143 1150647 - 1150623 - T 100 -13.7 -4.13945 | opp_overlap 1150623, overlap 1150626 ATTCTGATCCGAAAA GAACCTAGGAA ATC CTCCTAGGTTC TTTTTTTGTCTCAAT TERM 1144 1150623 - 1150647 + T 100 -13 -5.72616 | opp_overlap 1150623 1150626 ATTCTGATCCGAAAA GAACCTAGGA AATCC TCCTAGGTTC TTTTTTTGTCTCAAT TERM 1145 1150644 - 1150626 - T 93 -9.6 -4.19746 | opp_overlap 1150623, overlap 1150623 CTGATCCGAAAAGAA CCTAGGAA ATC CTCCTAGG TTCTTTTTTTGTCTC TERM 1146 1150722 - 1150699 - T 100 -9.7 -5.71983 | opp_overlap 1150699 GTAATCATAAAAAAA GCTAGTCTT TCTAAG AAGACTAGC TTTTCATGTTAAGCG TERM 1147 1150699 - 1150722 + T 100 -10.4 -4.4261 | opp_overlap 1150699 GTAATCATAAAAAAA GCTAGTCTTT CTAA GAAGACTAGC TTTTCATGTTAAGCG TERM 1148 1150784 - 1150801 + T 73 -4.1 -4.90869 | overlap 1150786 TAGAGTTGCTTTATG GCTCAAC TTAA GTTGACC TTTTTCATTGATGCT pnp 1152847 - 1150763 - | polynucleotide phosphorylase/polyadenylase TERM 1149 1151446 - 1151422 - G 70 -7.9 -3.65986 | TATCAGAAAGGATAA TCGCTCCTTGA TCA TCAAGGATCAA TCCCATAGCAATTCC TERM 1150 1151498 - 1151479 - G 72 -6.4 -4.39277 | overlap 1151482 CAATAGGAGAAGAAA TAGGGACG CCAG CGTCCATA AGAGCGAGGCAACCG TERM 1151 1152454 - 1152441 - G 70 -8.1 -3.63968 | overlap 1152434 TCTGAAATTGCTAAA GCAGC AGAT GCTGC GCAGATAGCAAGAGG TERM 1152 1152899 - 1152888 - R 79 -4.4 -5.29385 | AAGGGAACGAAAAAA CTAC TTAC GTAG ATTCAATCTTGTAAT rpsO 1153157 - 1152888 - | 30S ribosomal protein S15 yfhC 1153405 - 1153872 + | cytosine deaminase TERM 1153 1153918 - 1153965 + G 71 -7 -4.16284 | opp_overlap 1153927 1153936, overlap 1153919 GGATCAGGAGTCACG ACTTCAGAAGTTAGGAGAGGAA ATTG TTCCTAACCTCACTCCTGAAGA TTTATTGCAACCTAT TERM 1154 1153919 - 1153964 + G 77 -10.5 -3.09288 | opp_overlap 1153927 1153936, overlap 1153918 GATCAGGAGTCACGA CTTCAGAAGTTAGGAGAGGAA ATTG TTCCTAACCTCACTCCTGAAG ATTTATTGCAACCTA CPn1002 1153862 - 1154092 + | hypothetical protein CPn1003 1154796 - 1154089 - | hypothetical protein CPn1004 1155397 - 1154876 - | hypothetical protein CPn1005 1155933 - 1155412 - | hypothetical protein CPn1006 1156472 - 1155987 - | hypothetical protein CPn1007 1156689 - 1156910 + | hypothetical protein TERM 1155 1157228 - 1157244 + G 78 -5.1 -4.96646 | AAGTATGTTGTTGGA GAGACCT TAT ATGTCTC TTTTTGGTTATCTGG TERM 1156 1158022 - 1158032 + G 70 -5.4 -4.49556 | opp_overlap 1158022, overlap 1158028 1158030 1158030 GCAGTTTCTAGAAAA GAGT GAG ACTC TTTCTTTAGTAAGAA CPn1008 1156928 - 1158226 + | hypothetical protein map 1159058 - 1158183 - | methionine aminopeptidase CPn1010 1159672 - 1159064 - | hypothetical protein TERM 1157 1159503 - 1159484 - G 81 -9.4 -3.7626 | overlap 1159476 1159494 AGAAATATCCAAGAA TTGGAAGA AGCT TCTTCCAA AAGTAACGAAGAGGA CPn1011 1160306 - 1159899 - | hypothetical protein TERM 1158 1160404 - 1160432 + r 100 -14 -3.44051 | opp_overlap 1160407, overlap 1160407 AGGTAATATTTTTTA GAACAGGGTGTG AGTTA CACACTCTGTTC TTCTGGTAGTGACGG TERM 1159 1160407 - 1160429 + r 83 -9.9 -3.85864 | opp_overlap 1160407, overlap 1160404 TAATATTTTTTAGAA CAGGGTGTG AGTTA CACACTCTG TTCTTCTGGTAGTGA yzeB 1162193 - 1160418 - | ABC transporter permease fumC 1162245 - 1163627 + | fumarate hydratase TERM 1160 1163670 - 1163680 + T 74 -5.4 -4.7033 | opp_overlap 1163666, overlap 1163666 TGTATTGTAAAGTAC CGTA GCG TACG TTTTCTCTTCCCTTG ychM 1165426 - 1163729 - | Sulfate transporter TERM 1161 1166284 - 1166300 + G 70 -5.1 -4.55383 | overlap 1166281 GTTACAATCTGCGCC TCCTAAG AGT CTTTGGA TTATTTTTATAGGTT CPn1015 1165634 - 1166896 + | hypothetical protein CPn1016 1167042 - 1168901 + | hypothetical protein TERM 1162 1168943 - 1168973 + F 93 -10.6 -3.95893 | gap 1, opp_overlap 1168941 TATTGCTTTAATATG CGCGCTTC-CAAT ATAAGC ATTGTGAAGCGCG TTTCATATGTCTTTT ispH 1169006 - 1169938 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 1163 1170512 - 1170548 + GT 75 -8.1 -3.85603 | TGTAGTCATTAGTAT TTCCTTCCCTTTAGA CTCTTTC TCAAGGGGGAAGGAA TGTTTCTTTACTGAA CPn1018 1169898 - 1170632 + | hypothetical protein CPn1019 1172128 - 1170635 - | hypothetical protein TERM 1164 1170984 - 1170967 - G 71 -9.9 -2.7186 | overlap 1170955 1170969 AAATTTCTCCAACCA TAGGAGC AATC GCTCCTA AAATACCTAACGTTG TERM 1165 1171384 - 1171396 + g 75 -3.4 -5.17507 | GTTGCCTTTGATCTC GATG TTCTT CATC TTTTTGTTGGCTTTT TERM 1166 1171999 - 1172017 + g 79 -11 -2.90904 | overlap 1171996 TCAGCATCGCATATT GCTCTCCT GCA GGGAGAGC TACTTGTACTTCTGC CPn1020 1173679 - 1172147 - | hypothetical protein lcrH_2 1174213 - 1173695 - | low calcium response protein H CPn1022 1175673 - 1174213 - | hypothetical protein TERM 1167 1174876 - 1174888 + g 71 -4.1 -4.855 | GACTGCCTCTACACC GAGAC CAC GTTTC TTCTTTTTCTTTTTA TERM 1168 1174997 - 1175013 + g 90 -5.8 -5.42975 | AGTTCATGAGATTTT GAGGTC GTCAG GGCCTC TTTTTGTTTCTCTGC TERM 1169 1175795 - 1175776 - H 79 -4.4 -5.2894 | gap 1, opp_overlap 1175776 AAAGAGAAAATAAAA CAAAAATCC AAG GG-TTTTTG TTTGCAAAAAACACT TERM 1170 1176015 - 1176003 - H 77 -4.9 -5.13722 | opp_overlap 1176003, overlap 1175998 CGTAGTAAAATAAAA TCTAA GGG TTAGA TTTTTTAGAGATCTT TERM 1171 1176003 - 1176015 + H 77 -4.9 -5.04987 | opp_overlap 1175998 1176003 CGTAGTAAAATAAAA TCTAA GGG TTAGA TTTTTTAGAGATCTT CPn1023 1176035 - 1176334 + | hypothetical protein xerD 1177236 - 1176331 - | site-specific tyrosine recombinase XerD TERM 1172 1176997 - 1176985 - G 80 -2.7 -5.55695 | TAAGAAGAGAAAAAA TACTT TTA AAGCA ATGAGCCTACGCGCT TERM 1173 1177194 - 1177183 - G 71 -3 -5.04597 | opp_overlap 1177183 ATCTACAGATAAAAA CAAT GAGA ATTG TTCTAGAATCGTTGT TERM 1174 1178202 - 1178223 + G 81 -9.5 -3.74178 | gap 1, opp_overlap 1178201, overlap 1178195 1178204 GCTTTGCAACCGAAC GC-TAGGGAG AAT CTCCCTATGC TTTCAGCTTTGATTA TERM 1175 1178204 - 1178220 + G 79 -10.9 -2.9587 | opp_overlap 1178201, overlap 1178202 1178195 TTTGCAACCGAACGC TAGGGAG AAT CTCCCTA TGCTTTCAGCTTTGA pgi 1177302 - 1178882 + | glucose-6-phosphate isomerase TERM 1176 1178910 - 1178922 + F 77 -4.8 -5.10208 | CCTTTCATAAGTCTA CCTC AGAGA GAGG TTTTTCTTAAGGTTC CPn1026 1178997 - 1179140 + | late transcription unit A protein TERM 1177 1180377 - 1180400 + G 73 -8.8 -3.42943 | gap 1, overlap 1180375 1180380 GGCCTCATTTGGTTT GCCCCCGCCTG AGA CAGG-GGGGTC TGTATTTGTATTGCT TERM 1178 1180380 - 1180398 + G 78 -10.2 -3.27129 | overlap 1180377 1180375 CTCATTTGGTTTGCC CCCGCCTG AGA CAGGGGGG TCTGTATTTGTATTG TERM 1179 1180482 - 1180466 - g 74 -9.5 -3.28791 | opp_overlap 1180466, overlap 1180470 1180481 AGGTGCTGGCTACAA GGTATCT CAA AGATACC TTCGTGAGAAACTCA TERM 1180 1180466 - 1180482 + G 72 -9.5 -3.14564 | opp_overlap 1180466 1180470 1180481 AGGTGCTGGCTACAA GGTATCT CAA AGATACC TTCGTGAGAAACTCA CPn1027 1179175 - 1180758 + | hypothetical protein TERM 1181 1180737 - 1180751 + F 89 -11.4 -3.4582 | overlap 1180735 GGTCTGGCATCCGCC GGTCCC TAA GGGACC TCTTTAATCACCTAG mdhC 1181016 - 1182002 + | malate dehydrogenase CPn1029 1182008 - 1182847 + | hypothetical protein CPn1030 1183886 - 1182840 - | D-amino acid dehyrogenase arcD 1185552 - 1184095 - | arginine/ornithine antiporter TERM 1182 1184345 - 1184361 + g 77 -3.6 -5.08169 | opp_overlap 1184345 GTTATCATTGCCAAA GGGGCT TTAAT AGACCC TTTTTTAGGATATGT TERM 1183 1185451 - 1185479 + g 89 -11.8 -3.31461 | TGTCGCTGCCATGTT TTGGGGGAGG CTGAAAATC CCTCCCCCAA TTATGGAACTGACTA CPn1032 1186150 - 1185563 - | hypothetical protein CPn1033 1187500 - 1186184 - | hypothetical protein CPn1034 1188517 - 1187729 - | hypothetical protein aroDE 1190000 - 1188567 - | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein aroB 1191135 - 1189981 - | 3-dehydroquinate synthase TERM 1184 1190046 - 1190031 - G 70 -7.6 -3.6336 | overlap 1190024 GTATATCATAGAGAA TCTCCA TATT TGGAGA TGCACAATAGGTACC TERM 1185 1191073 - 1191052 - G 86 -10.3 -3.82061 | opp_overlap 1191058, overlap 1191055 GGATATAGAAGAGAA CAACTTCTT CTGG AAGAAGTTG GATATGAGTTTCACT aroC 1192199 - 1191120 - | chorismate synthase aroL 1192726 - 1192196 - | shikimate kinase aroA 1193999 - 1192662 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1186 1192793 - 1192773 - GR 89 -11.3 -3.35371 | TAGAGTCTGAACGAA GTTAGGAAA GGT TTTCCTAAC GCACGCAGTGTTGTG TERM 1187 1192972 - 1192993 + gr 75 -7.3 -4.11501 | overlap 1192982 TTCTGTAGTTCTTCG GTGATTGCA AGAA TGCGATCGC TTTCCTTGTCTTTAG TERM 1188 1193293 - 1193266 - GR 74 -9.2 -3.01001 | gap 1, opp_overlap 1193290, overlap 1193285 GATTTTGAAAGTAGA GCAGCTGCAGC AATGAAA GCTGC-GCTGC TGAAATCACCAGTTA CPn1040 1194741 - 1194070 - | hypothetical protein TERM 1189 1194178 - 1194192 + g 80 -11.4 -2.6732 | opp_overlap 1194174, overlap 1194177 1194172 ATAGCCTAAGAGTTC CTCCCC GTG GGGGAG ATCTTTAAGTTCACG TERM 1190 1194573 - 1194599 + g 85 -2.2 -5.86061 | overlap 1194573 1194574 AAACTTCTTCCTTTA CCTCCGTAGG ATGTTCA CTTGCGGAGA TTTTTTTTGCTCCAC TERM 1191 1194698 - 1194661 - G 73 -9.9 -3.05844 | gap 1, opp_overlap 1194654, overlap 1194687 TTGTGCATGCCAATA GTTGGAAGCTACGATCTC TTT GAGAACGG-GCTCCCAAC GAGAGGCTGTGTGGA bioA 1195994 - 1194723 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 1192 1194914 - 1194892 - GR 71 -4.8 -4.61231 | opp_overlap 1194894, overlap 1194895 CTATATTGTGAAAAA TATCCTGTAG CTT CTGCAGGGTA ATCTAGAGCGAGTAC TERM 1193 1195592 - 1195602 + gr 74 -6.8 -4.35682 | opp_overlap 1195592 1195591 TGAGTCCAACAAAAT GGCT CTT AGCC TTGTTTTGATTGTAG TERM 1194 1195623 - 1195633 + gr 71 -5.4 -4.50241 | opp_overlap 1195623 1195621, overlap 1195628 1195630 TTGATTGTAGTAATA TTGC ACA GCAA TTTTCATTGCTATTT bioD 1196590 - 1195931 - | dethiobiotin synthetase bioF_2 1197717 - 1196569 - | oxononanoate synthase TERM 1195 1197533 - 1197559 + g 100 -15.2 -3.28405 | AGCCGAGACCCTGTA GCTCCAAGCGAT TCT ATCGCATGGAGC TTGGTAATGTATTCT bioB 1198691 - 1197696 - | biotin synthase TERM 1196 1198783 - 1198761 - R 95 -13.6 -3.35695 | opp_overlap 1198761, overlap 1198756 1198767 TTTAGAGAAAGTCAA TAGGAACCAA TTT TTGGTTCCTA TTTTTTATGGTATGA TERM 1197 1198761 - 1198783 + r 100 -13.6 -5.34555 | opp_overlap 1198761 1198756 1198767 TTTAGAGAAAGTCAA TAGGAACCAA TTT TTGGTTCCTA TTTTTTATGGTATGA CPn1045 1199590 - 1198898 - | hypothetical protein phhA 1200675 - 1199587 - | phenylalanine 4-monooxygenase TERM 1198 1200481 - 1200469 - GH 71 -4.9 -4.58283 | overlap 1200458 TAAGTTTTTGAAAAA TTCTA AAA TAGAA ATGCATTTGTGTCGA dapB 1200552 - 1201346 + | dihydrodipicolinate reductase TERM 1199 1201824 - 1201834 + G 71 -3.2 -5.08015 | CGAGGAAGTGCAGTC CGAC ATC GTTG TTTCTTTTTTGCCTT asd 1201606 - 1202607 + | aspartate-semialdehyde dehydrogenase TERM 1200 1202878 - 1202896 + G 70 -6 -4.37971 | opp_overlap 1202877, overlap 1202880 CCTATCTACAACATC TGGAGATC TCA GATCTCGA TTTTGCTCGTATTTT TERM 1201 1203609 - 1203599 - g 70 -5.4 -4.52047 | GATGATAGCACAAAA CAAC GTC GTTG GATTTGTAATGGATG TERM 1202 1203891 - 1203873 - g 74 -7.6 -3.9093 | GGTATTATAGAAGAA TTACATAA TGA TTATGTAA AACAAAAAGCTATAG lysC 1202595 - 1203917 + | aspartate kinase dapA 1203926 - 1204801 + | dihydrodipicolinate synthase CPn1051 1204962 - 1205273 + | hypothetical protein CPn1052 1205417 - 1206172 + | hypothetical protein TERM 1203 1206551 - 1206598 + G 74 -8 -3.95324 | gap 1 AGAAAGTTTAATGAT TTCTGAAAAGCTTGCGATGACTT TCC AAGTTAGCG-AAGTTATTCAGAA TTGTTATTCACAATG CPn1053 1206153 - 1206704 + | hypothetical protein TERM 1204 1206765 - 1206736 - f 100 -12.3 -4.62069 | opp_overlap 1206736 CTTGGACTTGAAAAA GCCATTCCTATTT GAAA AAATGGGAATGGC TTTTTTTATAATAGG TERM 1205 1206736 - 1206765 + F 100 -14.5 -5.67063 | opp_overlap 1206736 CTTGGACTTGAAAAA GCCATTCCTATTT GAAA AAATGGGAATGGC TTTTTTTATAATAGG TERM 1206 1208415 - 1208405 - g 71 -6.8 -4.09108 | TCTAATTTAGAGAAA GCCT ATG AGGC TATCGAAGAGAACTA CPn1054 1207034 - 1209469 + | hypothetical protein TERM 1207 1209470 - 1209488 + F 83 -8.2 -4.43877 | GAGGACCATACCTAG CATAACTC CAA GAGTTGTG TTTCTTTAAAAATTC TERM 1208 1209613 - 1209638 + F 93 -3.1 -6.06529 | overlap 1209614 CACCACAGCTACCCC CCCCCCCCAGA CCAC TCTGTAGGGGC TTTTTTTTGTCTGTC TERM 1209 1209614 - 1209637 + F 71 -6.6 -4.21477 | overlap 1209613 ACCACAGCTACCCCC CCCCCCCAGA CCAC TCTGTAGGGG CTTTTTTTTGTCTGT TERM 1210 1210372 - 1210385 + G 71 -6.7 -4.13014 | GGAGTGGCGAAGACG GCCTT TGAA AAGGC TTTTGGAGCTCTGGA CPn1055 1209694 - 1210524 + | hypothetical protein CPn1056 1210527 - 1211231 + | hypothetical protein TERM 1211 1211375 - 1211402 + F 72 -9.4 -2.65751 | opp_overlap 1211379 1211382, overlap 1211374 GTGTTTTAATTATTA CTAACTATTTTA TTTA TAAAATGGTTAG CTCTTCTGTTCATCA TERM 1212 1211941 - 1211892 - g 100 -15.3 -3.53012 | gap 1, opp_overlap 1211895, overlap 1211895 TTTTTTCTCTGTAAA CTATTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAATTA TTGATAAGCTTCATT TERM 1213 1211895 - 1211938 + G 100 -14.8 -3.73534 | gap 1, opp_overlap 1211892 1211895 TTTCTCTGTAAACTA TTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAA TTATTGATAAGCTTC TERM 1214 1211938 - 1211895 - g 100 -19.2 -2.90496 | gap 1, opp_overlap 1211895, overlap 1211892 TTTCTCTGTAAACTA TTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAA TTATTGATAAGCTTC TERM 1215 1213065 - 1213085 + G 70 -2.6 -4.98436 | gap 1, overlap 1213063 AGAAGTCGTCCTTTC CTTCCGTTC AGAA GAA-GGAGG TTTTTATAGTGTTGA CPn1057 1211497 - 1213599 + | hypothetical protein TERM 1216 1213900 - 1213916 + G 80 -6.5 -4.88918 | overlap 1213901 GGATCCTTCAGGTCT AGCGATC CAC GATCGCA TTTTGTTTAAGGTAG TERM 1217 1213901 - 1213915 + G 78 -10 -3.52628 | overlap 1213900 GATCCTTCAGGTCTA GCGATC CAC GATCGC ATTTTGTTTAAGGTA CPn1058 1213748 - 1214839 + | hypothetical protein ksgA 1214848 - 1215681 + | dimethyladenosine transferase tktB_2 1217658 - 1215724 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1218 1217144 - 1217120 - G 71 -9.5 -2.94354 | opp_overlap 1217113, overlap 1217139 TTAGAGATCGACATA TTGTTGTCATT CAA AATAACAACAA ACTTCGATAAATCTG CPn1061 1217920 - 1217663 - | hypothetical protein xseA 1219820 - 1218156 - | exodeoxyribonuclease VII large subunit TERM 1219 1218213 - 1218203 - G 71 -6.8 -4.2349 | opp_overlap 1218203 TTGTGACAGTTAAAA TGGC CTC GCCA TCTTGCAACTGAATC TERM 1220 1218425 - 1218436 + g 78 -2.2 -5.50313 | AAGTTTCCTTGACAT TTGC ATAG GCGA TTTTTTGGTTTTGTA TERM 1221 1219427 - 1219437 + g 82 -3.2 -5.53288 | ATTGAGGAGCAAAGG GGAG GGG CTTC TTTTTTTCAGTTGCG TERM 1222 1220314 - 1220332 + G 71 -6.6 -4.21773 | GTAAAGTCTGTAGCT CAGGCGGG ACT CGTGCCTG TTCTTTGTGTTGGAG tpiA 1219951 - 1220715 + | triosephosphate isomerase CPn1064 1220719 - 1220898 + | hypothetical protein CPn1065 1221095 - 1220925 - | hypothetical protein secG 1221135 - 1221491 + | preprotein translocase subunit SecG TERM 1223 1222240 - 1222224 - g 71 -2.3 -5.10077 | overlap 1222226 1222231 AAAGATCCTAAAAAA TTTAAAG CCT CTTTAGA GAAGATCAAACGTCG def 1221735 - 1222295 + | peptide deformylase rnhB_2 1223258 - 1222362 - | ribonuclease HIII TERM 1224 1222889 - 1222904 + g 80 -2.6 -5.45726 | overlap 1222877 TTTTAGAGTCTTGGA CTTTAT TCTC ATAGAG TTTTTTTAAGATCTC yfgA 1223513 - 1223944 + | HTH transcriptional regulator CPn1070 1225511 - 1224141 - | hypothetical protein TERM 1225 1225867 - 1225891 + r 75 -5.1 -4.97405 | opp_overlap 1225877 ACAAAAGCTTCGCGG CAAAAAATAGG AAT CTTATTCTTTG TTTATTTTTATCCCT CPn1071 1227324 - 1225882 - | hypothetical protein TERM 1226 1228507 - 1228518 + G 78 -4.4 -5.24129 | TCGATAGTGCCCCCT CAGA TGCC TCTG TTTTTTATAAAGGCG CPn1072 1227969 - 1228838 + | hypothetical protein CPn1073 1229011 - 1229835 + | putative outer membrane protein