TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.585194 %AT, 1073601 nt, 8019 terms. Intergenic: 0.65745 %AT, H2T: 144127 nt, 909 terms; T2T: 29307 nt, 376 terms; H2H: 61423 nt, 738 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|15835535|ref|NC_002491.1| Chlamydophila pneumoniae J138, complete genome (length 1226565) CPj0001 282 - 1 - | hypothetical protein TERM 1 104 - 94 - G 73 -5.4 -4.64846 | GCAGAAAGGACAAAA GCTT AGC AAGC AAATGACACCAGCAA TERM 2 263 - 251 - G 70 -7.7 -3.64549 | AGAATAACAATAAGA GAGGA TAA TCCTC GAATAATTTTGCCTA gatC 573 - 878 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 895 - 2373 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 3 2874 - 2887 + G 71 -6.7 -4.17906 | TGTCCTGAAGATGCT GTTGC TTAC GCAAC TTCTTTGGTTTCCTT TERM 4 3610 - 3588 - g 74 -9.9 -3.09834 | opp_overlap 3587 GATCTTATGATGGAA TCCCCAGGA AAGAA TCCTGAGGA GATTTTAAAAGAGAA gatB 2370 - 3836 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 5 3907 - 3866 - f 95 -9 -5.00616 | opp_overlap 3874, overlap 3869 3874 GTCTGTCTTAAAAAA TCATAAAAGCATGTTAGA GATCTT TCTAACATGCTTTTTTTA TCTAAATACACATTT TERM 6 3904 - 3869 - f 87 -10.7 -3.37655 | opp_overlap 3874, overlap 3866 3874 TGTCTTAAAAAATCA TAAAAGCATGTTAGA GATCTT TCTAACATGCTTTTT TTATCTAAATACACA TERM 7 3874 - 3899 + F 100 -11.3 -5.72616 | opp_overlap 3869 3866 3874 TAAAAAATCATAAAA GCATGTTAGAG ATCT TTCTAACATGC TTTTTTTATCTAAAT TERM 8 3899 - 3874 - f 100 -10.6 -4.76171 | opp_overlap 3874, overlap 3869 3866 TAAAAAATCATAAAA GCATGTTAGA GATCTT TCTAACATGC TTTTTTTATCTAAAT TERM 9 4997 - 4984 - g 70 -5.3 -4.41616 | AGTCTTTGAAAGAAA CCATT CCAT AATGG GTGGCGGAGCCATTT TERM 10 5370 - 5351 - g 70 -9.4 -2.82491 | TACACAGGGACCATA CTCTTTTC TGGA GAAAAGAG TCTAGCAAACGATCC pmp_1 4127 - 6895 + | polymorphic outer membrane protein G family protein TERM 11 7029 - 7057 + T 89 -8.9 -4.62441 | overlap 7032 ATACTCGTATCACCT CAGCCCCTAGAGA CAT TCTTTAGGGGTTC TTTATTTGTCTAAAC TERM 12 7032 - 7054 + T 100 -12.8 -4.41158 | overlap 7029 CTCGTATCACCTCAG CCCCTAGAGA CAT TCTTTAGGGG TTCTTTATTTGTCTA CPj0006 7293 - 7138 - | hypothetical protein TERM 13 8223 - 8199 - g 83 -11.4 -2.92889 | opp_overlap 8198 8199, overlap 8214 GATGAAGAGAGTATA CGGCTGCAGC AGGAA GCTGAAGCCG CTTTAGCAAGACTTC TERM 14 8199 - 8223 + G 80 -11.4 -2.72461 | opp_overlap 8199 8214, overlap 8198 GATGAAGAGAGTATA CGGCTGCAGC AGGAA GCTGAAGCCG CTTTAGCAAGACTTC CPj0007 7515 - 10169 + | hypothetical protein CPj0008 10645 - 11358 + | hypothetical protein CPj0009 11485 - 12792 + | hypothetical protein TERM 15 14374 - 14364 - g 71 -6.8 -4.09108 | TCTAATTTAGAGAAA GCCT ATG AGGC TATCGAAGAGAACTA CPj0010 13104 - 15428 + | hypothetical protein TERM 16 15422 - 15442 + F 74 -9.1 -3.00766 | TACTCGCGAGGACCA TTCCTAGAA CTA TTCTAGGAG TCTATGTGCACTATT TERM 17 15785 - 15798 + G 73 -5.3 -4.68655 | overlap 15794 TTAGTACGATTTCTC TAGGA GTTG TCCTA TTTGTTTTAGGATTG CPj0011 15571 - 16296 + | hypothetical protein CPj0012 16323 - 17894 + | hypothetical protein TERM 18 17954 - 17973 + F 78 -7.9 -4.10791 | TTCCATTTCTCTAGG GATCCTC TTAGCT GAGGATC TTCTTTGTACCTCTT TERM 19 17980 - 18007 + F 77 -9.3 -3.281 | opp_overlap 18003, overlap 17978 CTGAGGATCTTCTTT GTACCTCTTTT GATTCG AAAAGAGGTGC TATTGTGAGTTGCCA TERM 20 18112 - 18128 + F 72 -5.8 -4.31737 | opp_overlap 18100, overlap 18118 18122 AACTCCCAAGATTTT GGCTTG GAAAG CGAGCC TTTCTTGCTACTTTT TERM 21 19518 - 19496 - gf 74 -4 -4.98672 | overlap 19497 19500 GGGAAAAAGATAAAA CTCAGTGCTG CCA CAGCTCAGAA AGATATTCGTATAGA pmp_2_1 18263 - 20401 + | polymorphic outer membrane protein G family protein pmp_2_2 20332 - 20787 + | polymorphic outer membrane protein G family protein TERM 22 20813 - 20842 + F 81 -10.1 -3.37056 | TTCGATGCTATTTTT CCATGGCTATTTT TAAA ATGATAGCCATGG TTATAGATACGTAGT TERM 23 21306 - 21293 - gf 71 -3.1 -4.99861 | CAGCAATCACAAAAA GCTGT TTTA ACAAC ACTAAGGGCGATTTG TERM 24 21424 - 21401 - gf 75 -9.6 -2.73875 | opp_overlap 21402, overlap 21398 CTGCTGTTAACAGCA GCGTGGTAGA TAAA TCTACCACGT TTATAGGGTTTTCTT TERM 25 21402 - 21423 + GF 100 -13.1 -3.98009 | opp_overlap 21401 21398 TGCTGTTAACAGCAG CGTGGTAGA TAAA TCTACCACG TTTATAGGGTTTTCT TERM 26 21512 - 21476 - gf 73 -8.7 -3.33261 | opp_overlap 21480 21497 CTGGAAGTTCGATAA CTACCGGCAAAGGAGCC GTT AGCTGCTCTACGGGTAG CTTGAGTTTGACAAA pmp_3_1 21043 - 21603 + | polymorphic outer membrane protein G family protein TERM 27 22973 - 22987 + GF 78 -5.6 -4.82667 | TGCAAACGAAGGGTT GCAGGG AGA CCGTGC TTTTTGGTGTGCTGG pmp_3_2 21537 - 23855 + | Pmp_3 TERM 28 23886 - 23936 + F 93 -11.5 -3.95448 | gap 1, opp_overlap 23886 23898, overlap 23898 AAAGAGCTCCATACA TCGAAG-GGAAAAGAGCTTTTAAG ATTT CTTGAAGGCTCTTTTCGATTTCGA TTTCCATTTTAGTGT TERM 29 23898 - 23923 + F 93 -9.1 -4.37198 | opp_overlap 23886 23898, overlap 23886 ACATCGAAGGGAAAA GAGCTTTTAAG ATTT CTTGAAGGCTC TTTTCGATTTCGATT TERM 30 23948 - 23964 + F 83 -8.1 -4.35405 | TCGATTTCCATTTTA GTGTTTT GCT AAAACAC TTTCTAATTTTTTTC TERM 31 25179 - 25197 + G 71 -4.6 -4.70659 | opp_overlap 25179, overlap 25181 CAGAAATGCTATAGA TCTTGCAT CGA ATGCAAAA TTTTTAAATCTCCGA TERM 32 25199 - 25231 + G 72 -6.3 -4.39748 | opp_overlap 25206, overlap 25200 25222 CATCGAATGCAAAAT TTTTAAATCTCCGAG CGA CTCGGGGAAATAAAG TTATTTTCTATGATC TERM 33 25224 - 25206 - g 75 -8.8 -3.66666 | opp_overlap 25200 25199 25222 TGCAAAATTTTTAAA TCTCCGAG CGA CTCGGGGA AATAAAGTTATTTTC pmp_4_1 24094 - 25377 + | polymorphic outer membrane protein G family pmp_4_1_2 25374 - 25862 + | polymorphic outer membrane protein G family TERM 34 26750 - 26764 + GF 75 -7.2 -4.22346 | overlap 26746 26759 ATCATCATGCCTTTG CTTCAA ACT TTGAAG TTTTCAGTCAGTTTG pmp_4_2 25765 - 26844 + | Pmp_4 TERM 35 26870 - 26926 + F 76 -3.8 -5.34632 | gap 1, opp_overlap 26883, overlap 26879 26881 26883 TCCAACGAGATAGCA TCAGGGTAA-GCCAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTCTCTTTGTCTTGC TTTTTGTATTTTATT TERM 36 26879 - 26916 + F 100 -9.9 -4.34766 | opp_overlap 26883, overlap 26870 26881 26883 ATAGCATCAGGGTAA GCCAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTCTC TTTGTCTTGCTTTTT TERM 37 26881 - 26914 + F 90 -11.1 -3.74137 | opp_overlap 26883, overlap 26879 26870 26883 AGCATCAGGGTAAGC CAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTC TCTTTGTCTTGCTTT TERM 38 26883 - 26912 + F 95 -13.7 -3.42943 | opp_overlap 26883, overlap 26881 26879 26870 CATCAGGGTAAGCCA GGGCTCTATGTAA GAGA TTTCATAGAGCCC TCTCTTTGTCTTGCT TERM 39 26912 - 26883 - f 89 -13.7 -2.54193 | opp_overlap 26883 26881 26879 26870 CATCAGGGTAAGCCA GGGCTCTATGTAA GAGA TTTCATAGAGCCC TCTCTTTGTCTTGCT TERM 40 27786 - 27772 - g 70 -2.8 -5.02476 | ACATCTTCGAAAAAA GGAG GGGCGAT CTCC ACGACTCAAGGACTT TERM 41 28164 - 28176 + G 70 -5.5 -4.46926 | overlap 28157 GATTTTGGGAGGGCA GGGAG GCG CTCTC TTTTCTAATAACGTA TERM 42 28200 - 28222 + G 71 -4.1 -4.82901 | gap 1, opp_overlap 28192 TAACGTAGTGACTCA TGCCACC-CC TCTA GGAGGTGCCA TTTTTATCAACACAG pmp_5_1 27193 - 28677 + | polymorphic outer membrane protein G family protein TERM 43 28935 - 28907 - g 77 -11.1 -2.86747 | opp_overlap 28903 28914, overlap 28904 28912 GAGGGACTATAATTA CTCAAGATGCTTC TCA GAAGCCTCTTGAA GTAGCTCCTTCTAGA pmp_5_2 28693 - 30030 + | Pmp_5 TERM 44 30031 - 30051 + T 77 -9.1 -3.31515 | opp_overlap 30033, overlap 30034 AAATACCGATTTTAA TAGGGAACT GAG AGTTCCTTA TTGTAGAGAGTATTT TERM 45 30034 - 30048 + T 79 -8.6 -3.7941 | opp_overlap 30033, overlap 30031 TACCGATTTTAATAG GGAACT GAG AGTTCC TTATTGTAGAGAGTA TERM 46 30143 - 30175 + T 100 -17.3 -2.87211 | AATTTCTATAGTTCA TGGGGTTTCTTTTTT TAT AAAGAAGAAACCCCA TGTCTGACGAGACCT CPj0020 32358 - 30271 - | Omp TERM 47 31477 - 31446 - G 73 -7.4 -4.07687 | opp_overlap 31446 31466, overlap 31433 AGTTGTTGGGGAAAA TGTCAGCAACAGTT TCCC AACTATCGCTGAGA TGGTATTCTCCAGAA CPj0021 34081 - 32375 - | Omp TERM 48 33746 - 33762 + g 75 -8.7 -3.68619 | opp_overlap 33736 TAAAACCAGTAGCTG CTGCAGG GGG TCTGCAG TTTCCATAGCTTGGG TERM 49 33816 - 33831 + g 77 -4.6 -5.04325 | GATCCCGCCAGGCCT GCTCCA ATGA TGGTGC TTTTTCTAGTTTGCG maf 34653 - 34063 - | Maf-like protein yjjK 36274 - 34682 - | ABC transporter protein ATPase TERM 50 35535 - 35547 + g 74 -6.9 -4.39166 | overlap 35536 TCGGCCTTTTCTTGC TCGCG AGA CGCGG TTTTCATCTCTACCA xerC 37267 - 36329 - | site-specific tyrosine recombinase XerC atsA 38275 - 37352 - | ribonuclease Z TERM 51 38339 - 38369 + r 77 -3.5 -5.44638 | opp_overlap 38339 ATACGCCACTACAAC TTTTGAATGACAA CTTTT TTATCATTTAAAA TTTTGTTTTTCTTAT CPj0026 39296 - 38430 - | hypothetical protein TERM 52 39350 - 39367 + r 80 -4.9 -5.25803 | opp_overlap 39363 39365, overlap 39364 ATGTATTCAAGGTCT GTTTGTA AATA TACAGAC TTTTTTATACGCATT TERM 53 39412 - 39365 - R 73 -8.9 -3.18571 | gap 1, opp_overlap 39350 39364 39367, overlap 39363 39367 GTTTGTAAATATACA GACT-TTTTTATACGCATTAAA TCTAC CTTAATGCGTATAAAAATAGTG ATTCTCAAGAGAACA TERM 54 39410 - 39367 - R 87 -11.5 -3.15257 | gap 1, opp_overlap 39364 39367, overlap 39363 39365 TTGTAAATATACAGA CT-TTTTTATACGCATTAAA TCTAC CTTAATGCGTATAAAAATAG TGATTCTCAAGAGAA TERM 55 39367 - 39410 + r 81 -10.8 -2.82623 | gap 1, opp_overlap 39367 39363 39365, overlap 39364 TTGTAAATATACAGA CT-TTTTTATACGCATTAA ATCTACC TTAATGCGTATAAAAATAG TGATTCTCAAGAGAA lon 41905 - 39446 - | Lon ATP-dependent protease CPj0028 42996 - 42211 - | hypothetical protein CPj0029 43426 - 43058 - | hypothetical protein TERM 56 44048 - 44064 + G 73 -3.6 -4.91511 | overlap 44050 ATTTCTCCTAATCCG CAGCTC TTTGC GAGCAG TTTTTCTGATAAGAT gcp_1 43562 - 44203 + | O-sialoglycoprotein endopeptidase TERM 57 44208 - 44220 + F 74 -3.5 -5.2166 | GTATTTTTTGATTTG TATTT TCT AAATA TTTTTTACATTGTTG rpsU 44382 - 44558 + | 30S ribosomal protein S21 dnaJ 44594 - 45772 + | heat shock protein J TERM 58 46055 - 46069 + G 77 -8.6 -4.06001 | ATAGGCTTGGGTTGT GATCTC TCT GAGATC TTTGCTTCGTTTCTA TERM 59 46902 - 46922 + G 75 -8.3 -3.86252 | opp_overlap 46902 46900 46898 CCCTTGTAGAAGAGA TGACTCGAG ATT CTGGAGTCA TTGTCTTTGGTGAGG pdhA_pdhB 45809 - 47845 + | (pyruvate) oxoisovalerate dehydrogenase alpha and beta fusion CPj0034 49128 - 47878 - | hypothetical protein TERM 60 48184 - 48194 + g 89 -6.8 -5.30155 | opp_overlap 48183 ATCTTTCAATGTAAT TGCG CGG CGCA TTTTTTCCTTAATGA CPj0035 50700 - 49237 - | hypothetical protein TERM 61 51020 - 51043 + GH 82 -6 -5.02074 | overlap 51015 51024 TGGTCGTTGTGGGTT TCAAGGAGAG CCTC CTCTTCTAGA TTTTTTAGGGCATCA CPj0036 50673 - 51470 + | hypothetical protein ptsH 51463 - 51789 + | Pts phosphocarrier protein HPr ptsI 51790 - 53505 + | Pts PEP phosphotransferase ybaB 53921 - 53631 - | hypothetical protein dnaX_1 55314 - 53986 - | DNA polymerase III subunits gamma and tau TERM 62 55089 - 55076 - G 71 -2.3 -5.18726 | TCTTTACAAGAAAAA CACTG GTTG CAGGG CTCGCCATCCTCGCT TERM 63 55351 - 55364 + H 74 -2.4 -5.4505 | ATAGAAAGCTCATTT TCTC ATTTAA GAGA TTTTTTCTTGAAGAC TERM 64 55420 - 55477 + H 89 -11.7 -3.41073 | opp_overlap 55423 55426 55442, overlap 55419 55423 55432 55442 CTTTTCGCAGAGATG GAATGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGAATC TCTTTGAATAAAATA TERM 65 55423 - 55474 + H 84 -12 -2.56124 | opp_overlap 55423 55426 55442, overlap 55419 55420 55432 55442 TTCGCAGAGATGGAA TGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGA ATCTCTTTGAATAAA TERM 66 55474 - 55423 - H 95 -14.2 -3.15999 | opp_overlap 55419 55423 55420 55432 55442, overlap 55426 55442 TTCGCAGAGATGGAA TGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGA ATCTCTTTGAATAAA TERM 67 55471 - 55426 - H 100 -15.9 -2.78154 | opp_overlap 55419 55423 55420 55432 55442, overlap 55423 55442 GCAGAGATGGAATGA TTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAA TGAATCTCTTTGAAT CPj0041 55667 - 57016 + | hypothetical protein CPj0042 57074 - 57856 + | hypothetical protein TERM 68 58909 - 58897 - g 77 -4.8 -5.06414 | overlap 58882 GGCTTTTAACAAAAA TGCC TATGG GGCA GCAAAAAATGCCTTT TERM 69 58933 - 58918 - g 75 -3.2 -5.14563 | opp_overlap 58919, overlap 58919 58931 TGGGGCAGCAAAAAA TGCCTT TGAT AAGGCT TTTGGAAGCTTGGAA TERM 70 58919 - 58932 + G 71 -6.7 -4.11484 | opp_overlap 58918 58919 58931 GGGGCAGCAAAAAAT GCCTT TGAT AAGGC TTTTGGAAGCTTGGA CPj0043 58118 - 60046 + | hypothetical protein CPj0044 60090 - 60452 + | hypothetical protein TERM 71 60510 - 60536 + F 77 -8.9 -3.5332 | gap 1, overlap 60506 GAAGATCGTTCCTAG CACAACTC-TAG AAAC CTATGAGTTGTG TTGCTTTAAAAATTT TERM 72 61408 - 61393 - g 71 -3.2 -5.03314 | opp_overlap 61384 61394, overlap 61394 TGGAGTGGCAAAAAA TGCCTT TGAT AAGGCT TTTGGGGCATTAGAA TERM 73 61394 - 61407 + G 71 -6.7 -4.11484 | opp_overlap 61393 61394, overlap 61384 GGAGTGGCAAAAAAT GCCTT TGAT AAGGC TTTTGGGGCATTAGA CPj0045 60740 - 62947 + | hypothetical protein CPj0047 63136 - 63336 + | hypothetical protein TERM 74 63314 - 63343 + F 89 -8.7 -4.46155 | opp_overlap 63314 AGGTAAACCGACAGA CTTCCTCTCATAA ATGG TTGTGAGACGAAG TTTTCTAAGTGTGTG TERM 75 64893 - 64844 - g 71 -8.6 -3.42574 | gap 1, opp_overlap 64844 64865 GGAAGCTTAGCAGAA GCTGCAGCTCAAGCTATAGGTGC AGATA GCCTCTATTGCTTG-GTTGCAGC TCATTACCATGATAT TERM 76 64844 - 64893 + G 91 -13 -2.7419 | gap 1, opp_overlap 64844, overlap 64865 GGAAGCTTAGCAGAA GCTGCAGCTCAAGCTATAGGTGC AGATA GCCTCTATTGCTTG-GTTGCAGC TCATTACCATGATAT yqfF 63368 - 65485 + | inner membrane protein CPj0049 65977 - 65495 - | hypothetical protein TERM 77 65583 - 65572 - G 90 -4.4 -5.59879 | overlap 65581 TAGAAAGAGAAAAAA GCAT TAGA ATGC CAAGAAGCAGTAGCG CPj0050 66489 - 66220 - | hypothetical protein CPj0051 66509 - 66790 + | hypothetical protein hemC 67681 - 66977 - | porphobilinogen deaminase sms 69020 - 67659 - | DNA repair protein RadA TERM 78 68052 - 68034 - GR 90 -7.4 -5.08483 | overlap 68036 TAAAAGTAAAGAAAA GCGATTCG GAT CGAATCCC GCAGTCTTCCTTACT rnc 69699 - 68986 - | ribonuclease III CPj0055 69805 - 70269 + | hypothetical protein TERM 79 70994 - 71016 + G 77 -4.8 -5.011 | opp_overlap 70984 70993, overlap 70996 AGAAACTGCAAAAGT CCTCGCAG GTAATGG CTGCGAAG TTTTCTTGTTTCAGT TERM 80 71920 - 71904 - g 72 -6.5 -4.28188 | CACGTAGAAGATAAA GACGCTA TTA TTGCGTC AGCATTGATTGCAGA mrsA 70629 - 72425 + | phosphomannomutase TERM 81 72509 - 72493 - f 75 -8 -3.78934 | opp_overlap 72492 72493 TCTCCTTCAGAATAA GGCCTT CTTTC AAGGCC ATTGTTGTATCCGAA sodM 72610 - 73233 + | superoxide dismutase (Mn) TERM 82 73814 - 73827 + G 71 -3.1 -4.93877 | CTGGAGGCGCACGTA TGCAG GAAT CTGTA TTTTCTTTAATGCAG accD 73315 - 74241 + | acetyl-CoA carboxylase subunit beta TERM 83 74315 - 74336 + G 70 -9.5 -2.78384 | ATTTTGTGAATTGGA TTCAGGAGG AGAA CTTCCTGAA TATACTACGCCAGGA TERM 84 74442 - 74412 - g 76 -9.9 -3.28712 | gap 1, overlap 74413 CTGCTGCCTGGACAA CGTGCTTTGATCCC TACC GGAATCAAAGCA-G AAATTCCCGAAGGGT TERM 85 74442 - 74413 - g 71 -10.1 -2.57132 | overlap 74412 TGCTGCCTGGACAAC GTGCTTTGATCCC TACC GGAATCAAAGCAG AAATTCCCGAAGGGT dut 74292 - 74729 + | deoxyuridine 5'-triphosphate nucleotidohydrolase ptsN_1 74731 - 75207 + | Pts IIA protein ptsN_2 75210 - 75887 + | PTS system IIA protein TERM 86 76833 - 76823 - g 73 -5.4 -4.73092 | ACAATGTAAAAGAAA GTCT GTA AGAC AAGCTCTTGAAGCTC CPj0062 75984 - 77369 + | hypothetical protein TERM 87 77896 - 77917 + G 72 -7.3 -3.95787 | overlap 77904 TATAGTTTTACTTTG GGAATCTTC TTAG GAAGATGCC TTTCTACGTCTAATA CPj0063 77788 - 77946 + | hypothetical protein CPj0064 78022 - 78255 + | hypothetical protein TERM 88 78505 - 78519 + F 70 -2.2 -5.27938 | overlap 78507 TATTTTCTAAGAGTT TTTTAA TTA TTAAGA TTTTTATTTAAAAAT CPj0065 78600 - 80330 + | hypothetical protein TERM 89 81753 - 81763 + G 76 -6.8 -4.55826 | opp_overlap 81744, overlap 81751 ACAAATCGTCCAGGC TGCC GGC GGCA TTTTCGTGTTTTAAG CPj0066 80601 - 82334 + | hypothetical protein TERM 90 82512 - 82541 + F 72 -8.1 -3.41738 | opp_overlap 82514, overlap 82510 82514 82519 82540 TCTCGTTGACATTAA AACCAAATAAAAA CATG TTTTTATTTGGTC TATTCTGTTAAAATA TERM 91 82514 - 82539 + F 86 -10.7 -3.27382 | opp_overlap 82514, overlap 82512 82510 82519 TCGTTGACATTAAAA CCAAATAAAAA CATG TTTTTATTTGG TCTATTCTGTTAAAA TERM 92 82539 - 82514 - f 100 -10.7 -4.34402 | opp_overlap 82514 82512 82510 82519 TCGTTGACATTAAAA CCAAATAAAAA CATG TTTTTATTTGG TCTATTCTGTTAAAA TERM 93 83022 - 82983 - g 71 -2.1 -5.10154 | overlap 82988 ATGGAAAAGGAAAAA GAAGATCCGGAGCATTT TGGAAG AACCGCTACGGATATCC CAATGAGATCTGCAT CPj0067 82629 - 83732 + | hypothetical protein TERM 94 83893 - 83872 - T 84 -6.7 -5.12068 | opp_overlap 83871 TATACCGAATAAAAA TATCTAGAA GAGG CTCTAGATA CATCTTTGGAAATAG TERM 95 83995 - 83964 - T 100 -10.4 -4.40237 | opp_overlap 83964 83962 83960 83969, overlap 83969 GAGGAGAGATCAAAA GAAAATGTTCCA AGATGTTA TGGAACATTTTC TCTCTAGTTTATTTT TERM 96 83964 - 83995 + T 80 -10.4 -3.13164 | opp_overlap 83964 83969, overlap 83962 83960 83969 GAGGAGAGATCAAAA GAAAATGTTCCA AGATGTTA TGGAACATTTTC TCTCTAGTTTATTTT TERM 97 83969 - 83990 + T 70 -4.5 -4.65494 | opp_overlap 83964 83969, overlap 83964 83962 83960 GAGATCAAAAGAAAA TGTTCCA AGATGTTA TGGAACA TTTTCTCTCTAGTTT TERM 98 83990 - 83969 - T 76 -4.5 -5.16132 | opp_overlap 83969 83964 83962 83960, overlap 83964 GAGATCAAAAGAAAA TGTTCCA AGATGTTA TGGAACA TTTTCTCTCTAGTTT CPj0068 84579 - 84004 - | hypothetical protein CPj0069 84976 - 86760 + | hypothetical protein CPj0071 87715 - 87266 - | hypothetical protein CPj0072 88731 - 87724 - | hypothetical protein infA 89026 - 89247 + | translation initiation factor IF-1 tuf 89444 - 90628 + | elongation factor Tu TERM 99 90667 - 90632 - f 82 -7.6 -4.62872 | opp_overlap 90638, overlap 90633 ATCAATGCTTAAAAA TGAATTTCGCGATGAT TTTC ATCATCGCGATTTTCT GGGTGTGTAGCTTAG TERM 100 90666 - 90633 - f 87 -11.1 -3.37 | opp_overlap 90638, overlap 90632 TCAATGCTTAAAAAT GAATTTCGCGATGAT TTTC ATCATCGCGATTTTC TGGGTGTGTAGCTTA TERM 101 90638 - 90661 + F 100 -14 -4.46155 | opp_overlap 90633 90632 GCTTAAAAATGAATT TCGCGATGAT TTTC ATCATCGCGA TTTTCTGGGTGTGTA secE 90772 - 91023 + | preprotein translocase subunit SecE nusG 91028 - 91576 + | transcription antitermination protein NusG rplK 91683 - 92108 + | 50S ribosomal protein L11 rplA 92135 - 92833 + | 50S ribosomal protein L1 TERM 102 92984 - 93042 + G 93 -12 -3.58269 | opp_overlap 92960 92969 93007 93016, overlap 92974 92985 93007 TCACTTTCTGGAGTT TCTGCAGAATTTGAAGTTTTAAAGAAGA GAA TCTTCTTTAAAGCTATAGAAGCTGCAGG TTTAGAGGTAGATTG TERM 103 92985 - 93041 + G 93 -13.3 -2.7464 | opp_overlap 92960 92969 93007 93016, overlap 92974 92984 93007 CACTTTCTGGAGTTT CTGCAGAATTTGAAGTTTTAAAGAAGA GAA TCTTCTTTAAAGCTATAGAAGCTGCAG GTTTAGAGGTAGATT rplJ 92849 - 93361 + | 50S ribosomal protein L10 rplL 93405 - 93794 + | 50S ribosomal protein L7/L12 TERM 104 93801 - 93830 + F 100 -13.9 -5.52079 | opp_overlap 93806 GGACTGTAATTTGTA GAAAAGAAAAATC GAAA GATTTTTCTTTTC TTTTTCTTTTCATGT TERM 105 93825 - 93806 - f 83 -8 -4.4017 | opp_overlap 93801 GTAATTTGTAGAAAA GAAAAATC GAAA GATTTTTC TTTTCTTTTTCTTTT TERM 106 93880 - 93854 - f 76 -3.6 -5.28176 | overlap 93855 TTCATGTATAAAAAA CCGAATGCTCCC TTT AGAAGCATACGT AGGCTTAATTTAGGG TERM 107 93879 - 93855 - f 70 -7.1 -3.76182 | overlap 93854 TCATGTATAAAAAAC CGAATGCTCCC TTT AGAAGCATACG TAGGCTTAATTTAGG TERM 108 93989 - 93969 - g 95 -4.7 -5.76949 | CAGTGTTAAAAAAAA GGAAGATAT CCC AGACCTTCC AAATCTTATCGAAAT rpoB 93931 - 97689 + | DNA-directed RNA polymerase subunit beta TERM 109 97918 - 97900 - g 77 -4.6 -5.0133 | TATTTTGTGAAAAAA TCTTTGGT CCT ACTAAAGA TTGGGAATGTTGCTG TERM 110 98363 - 98349 - g 71 -2.1 -5.10933 | TTACGCAAAACAAAA TCTCA GCAAG CGAGA ATGAAGTTAGCCAAA TERM 111 98741 - 98726 - g 75 -3.2 -5.22039 | opp_overlap 98737, overlap 98728 GTTAAAGGGAAAAAA TGGACG CTTC CGTCAA AATCTTTTAGGAAAA rpoC 97713 - 101894 + | DNA-directed RNA polymerase subunit beta' TERM 112 101909 - 101950 + F 93 -8.9 -4.81831 | opp_overlap 101919 101937, overlap 101909 101910 ACTAGGTGACACAGT CTTTTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGAA TGTTTTTTTTTGTTA TERM 113 101909 - 101952 + F 95 -4.9 -6.36459 | gap 2, opp_overlap 101919 101937, overlap 101909 101910 ACTAGGTGACACAGT C-TT-TTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGAATG TTTTTTTTTGTTAAC TERM 114 101910 - 101949 + F 93 -12.4 -3.45438 | opp_overlap 101919 101937, overlap 101909 101909 CTAGGTGACACAGTC TTTTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGA ATGTTTTTTTTTGTT TERM 115 101940 - 101919 - f 74 -9.5 -3.14683 | opp_overlap 101910 101909 101909, overlap 101937 ACAGTCTTTTATCAA GGAGGTTAT GTTT ACAACCTCC TTGATAGGAATGTTT tal 102003 - 102986 + | transaldolase B CPj0084 103033 - 103425 + | ferredoxin TERM 116 103456 - 103466 + T 71 -5.4 -4.59853 | TTTTCGTTTTGCAGA GCTT CCA AAGC TTTTTCAAGGATTGC CPj0085 104177 - 103434 - | hypothetical protein TERM 117 104182 - 104172 - G 93 -4 -5.80727 | opp_overlap 104172 AAAAAGAATAAAAAA TTTC ATA GAAA ATTATGTAGTTAGTT TERM 118 104288 - 104271 - H 70 -4.1 -4.82901 | opp_overlap 104271 104273, overlap 104273 TCGTTTTCAGAAAAA TATTCCC AATA GGGAATC TTTGGATCTAGAAGA TERM 119 104558 - 104543 - H 75 -4.8 -4.86731 | overlap 104538 CTTTTTTAAAGAAAA TTCTTT TCTA AAAGAA TAAGCGGTAAAATAT TERM 120 105115 - 105105 - g 73 -5.4 -4.70613 | AAAAGTTGAAGAAAA GAAC TGG GTTC TGGATCTTAGTTCCT atpE 104575 - 105201 + | V-type ATP synthase subunit E CPj0087 105250 - 106050 + | hypothetical protein atpA 106044 - 107819 + | V-type ATP synthase subunit A atpB 107824 - 109140 + | V-type ATP synthase subunit B atpD 109125 - 109754 + | V-type ATP synthase subunit D TERM 121 110061 - 110074 + G 70 -3.7 -4.89477 | opp_overlap 110062, overlap 110062 AGATTGTTAGAGTCA AGCCC CTAG GGGCA TTTTCTTCTTCAGAG atpI 109745 - 111727 + | V-type ATP synthase subunit I TERM 122 112193 - 112204 + G 71 -3 -5.04356 | TTATGCAGCGATTGG GATT GTCG AATC TTTTTCATTGTTTGC atpK 111822 - 112247 + | V-type ATP synthase subunit K TERM 123 112529 - 112513 - gf 89 -9.5 -4.09108 | GGCAAGGTAGAGAAA TTGACCT ATG AGGTCAA TCAAAGTGCGGGGTA CPj0093 112180 - 112689 + | hypothetical protein TERM 124 113537 - 113496 - g 100 -16.8 -3.69332 | opp_overlap 113509 CAACAAGACCCGAAA CTTCATTAGGAGACACTG GGATCG CAGTGTCTCCTAACGACG AGCGCTATGCATCAT TERM 125 114755 - 114771 + G 75 -2.3 -5.28983 | GGTATTGATGAAGAC TCTTTAG GGC TTGAAGA TTTTTATATTTTAGA valS 112823 - 115645 + | valyl-tRNA synthetase TERM 126 115807 - 115791 - g 70 -5.9 -4.38154 | opp_overlap 115791 115792 AGATCTTGCAGAAAA TCCTCTT TTG AAAAGGA GGTTTTTACGAGAGG TERM 127 115792 - 115809 + G 74 -6.3 -4.56597 | opp_overlap 115791, overlap 115791 GATCTTGCAGAAAAT CCTCTTT TGAA AAGGAGG TTTTTACGAGAGGCA pknD 115666 - 118464 + | serine/threonine-protein kinase uvrA 123985 - 118505 - | excinuclease ABC subunit A TERM 128 119626 - 119591 - G 86 -9.8 -3.99806 | gap 1, overlap 119592 119624 AGAATCCATGAGAAA TCCTCCTTGAGGTCCAG ATC CTGGACC-CAAGAAGAT CGCGTGATCGGCATG TERM 129 119625 - 119592 - G 100 -13.3 -2.99161 | gap 1, overlap 119591 119624 GAATCCATGAGAAAT CCTCCTTGAGGTCCAG ATC CTGGACC-CAAGAAGA TCGCGTGATCGGCAT TERM 130 121523 - 121534 + g 70 -5.8 -4.24404 | opp_overlap 121523 121522 AGAAGCAAAGAGAAG CTCG TGAG CGAG TTTTAGCCTTTGAAT TERM 131 122319 - 122306 - G 70 -8.1 -3.72695 | AGGCTTTCCATTAAA GAGGC CCTC GCCTC CGAAAATTCCTGCTC TERM 132 123165 - 123155 - G 70 -5.4 -4.46514 | ATCTATGGAAATAAA GATC CCG GATC CTTGACAAAGAGAGC TERM 133 123190 - 123175 - G 78 -9 -3.86897 | CGGATCCTTGACAAA GAGAGC AACG GCTCTC CAGGGCATGAGGAGA TERM 134 124556 - 124567 + G 70 -5.8 -4.2461 | overlap 124547 124551 TCTCTCTATCCTAAG GGGA TATT TCCC TTTGTTCCTGAGGGT pyk 124226 - 125680 + | pyruvate kinase TERM 135 125789 - 125801 + T 87 -6.3 -5.51046 | TCAGGGCCCCTTCGA CTTCA CCT TGAAG TTTTTTCTCTCTTTA htrB_2 126799 - 125774 - | lipid A biosynthesis lauroyl acyltransferase TERM 136 126412 - 126423 + gT 72 -5.8 -4.40804 | opp_overlap 126412 CATTAACAGCAATCA CAGG AAAA CCTG TTTTATAAGCTAATA htrB_1 127202 - 126681 - | acyltransferase CPj0099 127304 - 127579 + | hypothetical protein CPj0100 128852 - 127590 - | hypothetical protein TERM 137 127803 - 127825 + g 71 -2 -5.21709 | TTGGGCTATAATAGT CTGAAGAAAA GTA TTTTCTAAAG TTTTTTCATCTAAAA TERM 138 128088 - 128101 + g 79 -6.7 -4.59773 | opp_overlap 128087 TAAATTTAAATTTAG GGGAA TGCA TTCCC TTTTTAAAAATAAAA ybbP 129643 - 128849 - | hypothetical protein TERM 139 128912 - 128923 + g 70 -7.2 -3.75937 | opp_overlap 128908 128911 AGGGGAAAGAATACT GCGG AGTA CCGC TTTGAATCTATCTAT TERM 140 130109 - 130131 + G 75 -2.1 -5.27769 | gap 1 AGGAAATATTTTCGG CACCTT-ATT AGGT AGTGAAGGTG TTTTTGCTTTTTTCT cydA 129834 - 131180 + | cytochrome oxidase subunit I cydB 131191 - 132225 + | cytochrome oxidase subunit II TERM 141 132368 - 132344 - T 75 -8.5 -3.45405 | opp_overlap 132338 132344, overlap 132342 132338 TCTAGAAAATGAAGA GCTTCCATTGG AAT CCTTTGGAAGC TATCATTATACTTCG TERM 142 132344 - 132368 + T 71 -8.5 -2.9953 | opp_overlap 132344 132342 132338, overlap 132338 TCTAGAAAATGAAGA GCTTCCATTGG AAT CCTTTGGAAGC TATCATTATACTTCG CPj0104 133586 - 132384 - | hypothetical protein TERM 143 133100 - 133116 + g 95 -8.1 -5.02074 | opp_overlap 133112 ACAGCTCGATGGGTC CTTTGTT AGC AACAAAG TTTTTTGCAACATAG CPj0105 134558 - 133737 - | hypothetical protein phoH 134802 - 136088 + | ATPase CPj0107 136873 - 136100 - | hypothetical protein TERM 144 136763 - 136781 + g 89 -3.8 -5.67967 | TGATTGATTTAGTGC CCAGGCAA AGA TTTTCTGG TTTTTTTCTGCTGGT CPj0108 137568 - 137011 - | hypothetical protein TERM 145 138888 - 138904 + G 70 -5.1 -4.57341 | opp_overlap 138888 GGATTAGTGTACGAA GGTACAA AAG TTGTCCC TTTTTCAACAGCATT TERM 146 139984 - 139952 - g 73 -7.1 -4.11216 | overlap 139955 GCCTTATGCCCAAAA TCATTATCCTTTTGA AAA TCAAAAGGAAACCGA AGAGGCATTTCCTGC ileS 138366 - 141497 + | isoleucyl-tRNA synthetase TERM 147 141534 - 141523 - T 73 -4.4 -4.8384 | opp_overlap 141520 141517 141523 GAAACAACTGAAAAA CCAT AAGA ATGG TTATTTCTTGTGGTT TERM 148 141523 - 141547 + T 75 -5.1 -5.00846 | opp_overlap 141523, overlap 141520 141517 GAAACAACTGAAAAA CCATAAGAA TGGTTAT TTCTTGTGG TTTTTCTCCTCTTTC lepB 143445 - 141535 - | signal peptidase I CPj0111 144397 - 143642 - | hypothetical protein TERM 149 144060 - 144047 - G 71 -2.4 -5.19879 | GTTTAAAGAGAAAAA CTGA GAACCT TCAG AAGAGAGCGAAACAA rpmE2 144478 - 144807 + | 50S ribosomal protein L31 type B TERM 150 144868 - 144837 - f 100 -19.6 -4.42386 | opp_overlap 144837 TTCCCATTTATAAAA CCCATTCTCAGGCT CTCA AGCCCGAGAATGGG TTTTTTTGTGAGGGC TERM 151 144837 - 144868 + F 100 -17.4 -5.60993 | opp_overlap 144837 TTCCCATTTATAAAA CCCATTCTCAGGCT CTCA AGCCCGAGAATGGG TTTTTTTGTGAGGGC TERM 152 145115 - 145101 - g 80 -3.6 -5.29846 | opp_overlap 145101 145112, overlap 145089 145095 AAGTCGAAATAAAAA TTTCAA ATC CTGAAA TTTTTTCTAATTCTA TERM 153 145101 - 145115 + G 76 -2.9 -5.39755 | opp_overlap 145089 145101 145095, overlap 145112 AAGTCGAAATAAAAA TTTCA AATCC TGAAA TTTTTTCTAATTCTA TERM 154 145787 - 145802 + G 73 -9 -3.52652 | opp_overlap 145787 145782 145789, overlap 145794 GCGGTGAGAATCACA CACCTG CCTA CAGGTG TTGTAGTTACATGCC TERM 155 145915 - 145901 - g 71 -4.2 -4.84529 | opp_overlap 145901 GCAGAAATGCAAAAA CGCC ATAACGA GGCG TCTGCTATGCGTTCT prfA 145046 - 146119 + | peptide chain release factor 1 TERM 156 146718 - 146733 + G 75 -9 -3.66028 | overlap 146731 GAAGTGCGTTGTTAC GAGCCT TGGA AGGCTC TTGTTGGAGGTTCTA hemK 146109 - 146975 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase ffh 146990 - 148336 + | signal recognition particle GTPase rpsP 148327 - 148686 + | 30S ribosomal protein S16 TERM 157 149561 - 149537 - g 70 -5.8 -4.30987 | AGCTGCGAGAATAAA TTTTGTCTTC CTCAT GAAGGCAAAA CCATATTCTGGTTAC trmD 148700 - 149785 + | fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein rplS 149813 - 150178 + | 50S ribosomal protein L19 rnhB 150234 - 150878 + | ribonuclease HII gmk 150875 - 151492 + | guanylate kinase CPj0121 151489 - 151782 + | hypothetical protein TERM 158 152457 - 152476 + G 76 -7.9 -4.19177 | ATAGAACATGTCAGG TCTCGAG CCATTA CTCGAGA TTTATCTTGGGGGAT metG 151782 - 153437 + | methionyl-tRNA synthetase recD_1 155680 - 153482 - | exodeoxyribonuclease V (alpha subunit) TERM 159 154854 - 154893 + g 84 -11 -3.72989 | opp_overlap 154863 AGTGTCCCAGAAATG TCTTGAATATGTAAAAGC TTAC GCTTTTGCATATTGAGGA TTTGCGTATCGATTT TERM 160 155040 - 155024 - G 88 -12.3 -2.71263 | AAGTTCTTCTAAGGA GTGCTGG ATA CCAGCAC ATAGGCGACTTTCAG TERM 161 156704 - 156720 + G 75 -2.3 -5.28778 | GAGATATTAGAAATG CTCTT GATAACG AAGAG TTTTTTATGACTCAT CPj0124 156325 - 157782 + | hypothetical protein CPj0125 157807 - 158319 + | hypothetical protein TERM 162 158527 - 158546 + G 70 -2.8 -5.05442 | overlap 158523 ATTAGTTATTGGTAT TCTCATAC TATT GCATGGGA TTATTTTTTTTCTCT TERM 163 159649 - 159629 - g 100 -14.1 -3.06087 | opp_overlap 159629 159630, overlap 159639 AATAGATTTGCAAGA CGCTCAAAG AGC CTTTGAGCG TCAAAGTCAGGAGTT TERM 164 159722 - 159702 - g 71 -9.8 -2.66034 | opp_overlap 159705, overlap 159705 ACAAAGGTGAGACTA GAAGCACT TCAAC AGTGCTTC TCGGATCTTAGGGAG TERM 165 159851 - 159840 - g 78 -5.8 -4.8048 | opp_overlap 159840, overlap 159848 GTGCGATATCAAAAA GAGC AAAG GCTC TATTGGGAAACAATA CPj0126 158520 - 160799 + | hypothetical protein ytfF 161854 - 160838 - | cationic amino acid transporter TERM 166 161702 - 161689 - G 70 -5.3 -4.44915 | CAATCAGGGAGAAAA TACCA AAAA TGGTA TAACGGGTAAGTACA CPj0128 161988 - 162767 + | biotin protein ligase CPj0130 163956 - 162772 - | hypothetical protein TERM 167 163511 - 163523 + g 87 -4.9 -5.57054 | opp_overlap 163522, overlap 163520 163522 ATTAGGAAATCTGGA TCTTT AAG AAAGA TTTTTTTCCATTCTT TERM 168 163554 - 163525 - G 70 -9.5 -2.80512 | opp_overlap 163522 163520, overlap 163524 163522 ATCTTTAAGAAAGAT TTTTTTCCATTCT TCGA AGGATGGAAAAAA GAGCTCATTTTTTAG TERM 169 164180 - 164170 - H 70 -4 -5.00616 | opp_overlap 164170 TCGTCTCTGAAAAAA GAAA GAT TTTC TTTAAGTCTTGCAAT TERM 170 164822 - 164832 + G 73 -5.4 -4.69027 | overlap 164812 GGATAGAGAGAGTCT CACT TTT AGTG TTTTTGAGTGCATTT CPj0131 164260 - 165294 + | hypothetical protein TERM 171 165789 - 165800 + G 78 -2.2 -5.52347 | GGAAGCGGATCGTTT GTCT CGAG AGGC TTTTTTGATTTTATT CPj0132 165298 - 166275 + | hypothetical protein CPj0133 167045 - 166272 - | hypothetical protein TERM 172 167142 - 167113 - R 100 -13.8 -5.27938 | ATTCCCAAAGAAAAA GGTCTCTTTTCT TTAGTT AGAAAAGAGACC TCATGGAAAATTGTT groEL 168809 - 167175 - | chaperonin GroEL TERM 173 168554 - 168568 + g 70 -5.7 -4.25848 | overlap 168558 168559 TTGTAGTTCCGTCGC CTGCT TTGTC AGCAG TTTTGCTGGCGACTT groES 169159 - 168851 - | co-chaperonin GroES TERM 174 169274 - 169244 - R 89 -10.7 -3.61398 | overlap 169260 TTTTTTGTGCAATAA TTTTAGCACTCAA TAATT TTAAGTGCTAAAA ACTCAATCTTCTGAA pepF 171112 - 169277 - | oligopeptidase TERM 175 169451 - 169464 + g 73 -3.9 -5.00616 | overlap 169441 TTCGAGAGCCCCTGG TTCTT GTGT AAGAA TTTTTTCAGCAAAGG TERM 176 169630 - 169654 + g 88 -10.8 -3.84406 | opp_overlap 169634 CGTAAGTTGCGGAGA GGAACTCTTC AGTAA GAGGAGTTCC TTGTTCTGCTGCAGA TERM 177 170879 - 170890 + g 82 -3 -5.52384 | TTGGTCTAATTTTCG TTCT ACAG AGAA TTTTTTTGATAAAAG TERM 178 171202 - 171184 - R 71 -3.1 -5.08088 | opp_overlap 171185, overlap 171185 AATCTTTAAGAAAAA GCCAAGA ACAAA TCTTGGT TTAAAGATTAGAAGG ybgI 171965 - 171210 - | Acr family transporter TERM 179 172439 - 172417 - R 77 -5.6 -4.93898 | opp_overlap 172417 AGACTATTAGAAAAA TCTTTGAGCC GAA GAGTCAAAGA TTTTAATCAGGCTAT hemL 173730 - 172408 - | glutamate-1-semialdehyde aminotransferase yqgE 174367 - 173801 - | hypothetical protein yqdE 174821 - 174381 - | hypothetical protein rpiA 175513 - 174818 - | ribose-5-phosphate isomerase A CPj0142 175802 - 175524 - | hypothetical protein TERM 180 175762 - 175744 - G 71 -3.2 -5.08088 | opp_overlap 175748, overlap 175745 175748 AAGTGCGAACAAAAA TTAAGAAT GGA ATTCTTAG TAGACAATAGTTGGA TERM 181 175876 - 175916 + r 85 -9 -4.14764 | opp_overlap 175879, overlap 175879 TAGCGTACATAAAGG GAAGAGCTGGTTGGATCT ATAGA GGTTCCAACCAGCTCTGG TTTCATTATTTCCAA TERM 182 175879 - 175913 + r 100 -15.1 -3.08658 | opp_overlap 175879, overlap 175876 CGTACATAAAGGGAA GAGCTGGTTGGATCT ATAGA GGTTCCAACCAGCTC TGGTTTCATTATTTC TERM 183 175913 - 175879 - R 100 -14.4 -3.35695 | opp_overlap 175879 175876 CGTACATAAAGGGAA GAGCTGGTTGGATC TATAGAG GTTCCAACCAGCTC TGGTTTCATTATTTC yxjG_1 177046 - 175922 - | hypothetical protein TERM 184 176029 - 176019 - G 76 -6.8 -4.4773 | TCACATGAAGCAAAA CCAC ACT GTGG ACTTAGAGAGAGTCT TERM 185 176942 - 176955 + g 74 -6.7 -4.24562 | opp_overlap 176942 176940 ATCTAGAGAAATAGA GCCTT CTTT AAGGC TTTCTCTAGTTTTTT TERM 186 177343 - 177363 + H 86 -4.9 -5.59879 | opp_overlap 177346 TGATAATTTCTCAGG TAATTAAAA ATC TTTTAATTG TTTTTTCTGTTTATG TERM 187 177656 - 177644 - H 72 -2.7 -5.30348 | opp_overlap 177645, overlap 177645 ATGTAATAAGAAAAA CCTTT TTA AAAAG TGCTTGGGGTGAATT TERM 188 178684 - 178711 + G 73 -5.6 -4.48713 | gap 1 TCAGCCTATTTTTGT GACAG-AGCCTTC TTT GGAGGATGCTGTC TTTATTCTTCGTGGA clpB 177674 - 180274 + | Clp protease ATPase TERM 189 180598 - 180588 - g 78 -4 -5.14645 | ATAATGTAACAAAAA CTTA TGA TAAG AAAGCTTCTGTTATA CPj0145 180488 - 182083 + | hypothetical protein CPj0146 182324 - 182809 + | hypothetical protein CPj0147 182936 - 183385 + | hypothetical protein TERM 190 183447 - 183477 + F 83 -6.9 -4.68209 | opp_overlap 183450 183453, overlap 183450 CCTTCCGTTGTTTTA AAAGAACCTCAAG AATAA CTAGAGGTTCTTG TTTGTTTATTGCAAT TERM 191 183450 - 183474 + F 89 -8.6 -4.43668 | opp_overlap 183450 183453, overlap 183447 TCCGTTGTTTTAAAA GAACCTCAAG AATAA CTAGAGGTTC TTGTTTGTTTATTGC TERM 192 183474 - 183450 - f 82 -8.6 -4.07568 | opp_overlap 183447 183450, overlap 183453 TCCGTTGTTTTAAAA GAACCTCAAG AATAA CTAGAGGTTC TTGTTTGTTTATTGC CPj0148 183557 - 185416 + | S/T protein kinase TERM 193 185625 - 185637 + G 71 -3.3 -5.06585 | CACGTCTCGGAGATC GTCCC TCT GGAAC TTTTTCTGTGGTTTC TERM 194 186880 - 186864 - g 72 -8 -3.78067 | AAGATTTAATGCAAA TTCCCG GGATA CGGGAA CGCTCTGCAAGAAAT ligA 185426 - 187414 + | NAD-dependent DNA ligase LigA TERM 195 189162 - 189146 - g 84 -2.9 -5.63504 | AATCCTACAAAAAAA CGAAGAC GAA GTCCTTG CATTGAAGAGTACAA TERM 196 191628 - 191671 + G 83 -11.2 -3.53343 | opp_overlap 191628, overlap 191636 AAGTATATGCAGATA CTTTTAGATGCACCAGTCAG TCTA TTGTATGGTGCATTTAAAAG TTTCAAAAACGAATT CPj0150 187545 - 192158 + | hypothetical protein TERM 197 192227 - 192256 + T 93 -5.8 -5.77853 | gap 1, opp_overlap 192227 CAACTGCAATGAAAA CCATAGAG-GACT AGGAA AGGCTCTCTATGG TTTTTTTTCACAATT TERM 198 192256 - 192227 - T 72 -5.8 -4.43309 | gap 1, opp_overlap 192227 CAACTGCAATGAAAA CCATAGAG-GACT AGGAA AGGCTCTCTATGG TTTTTTTTCACAATT mhpA 193853 - 192333 - | monooxygenase TERM 199 193913 - 193903 - R 71 -5.4 -4.52047 | overlap 193895 193893 CATTATAGGATAAAA TCCT AGG AGGA ATCAAGAAACGAATT TERM 200 194021 - 193993 - R 83 -10.4 -3.29511 | opp_overlap 193991 TGTAGTGTTCTAGAA CCGTTGTACCTT GAATT AAGGTACAACTG AAATTTAAAGTGTTC CPj0152 194976 - 194026 - | hypothetical protein TERM 201 195069 - 195079 + H 82 -5.4 -5.21709 | opp_overlap 195069 TGAAGGAAAAACGGA CAAG ACT CTTG TTTTTTCCTCTGGGG TERM 202 196707 - 196737 + G 84 -9.8 -3.75863 | overlap 196710 GTAGATCTTTACATT GGAGGTGCAGAACA CGC TGTTCTTCATCTTC TTTACTCGAGATTTT TERM 203 196710 - 196734 + G 74 -7.9 -4.0031 | overlap 196707 GATCTTTACATTGGA GGTGCAGAACA CGC TGTTCTTCATC TTCTTTACTCGAGAT leuS 195144 - 197606 + | leucyl-tRNA synthetase TERM 204 197610 - 197627 + G 74 -4.9 -4.7889 | gap 1 TTTGTCCTATGATGC TACGA-GG TGT CCATCGTA TTTTTAAGTGTTTCT TERM 205 198160 - 198172 + G 71 -3.4 -5.06414 | TAAAAACTATTTCTC TCCA GTAGA TGGA TTTTTATTACAGGAC gseA 197603 - 198916 + | 3-deoxy-D-manno-octulosonic-acid transferase CPj0155 199402 - 199196 - | hypothetical protein CPj0156 199828 - 199478 - | hypothetical protein TERM 206 199877 - 199893 + r 72 -8.1 -3.49789 | AAAATATTTGGTGCC TTCTTCT TTC AGAAGAA TATCTTTTATCAGTT CPj0157 200435 - 200007 - | hypothetical protein CPj0158 201142 - 200603 - | hypothetical protein TERM 207 200842 - 200854 + g 84 -5.5 -5.40004 | AAAAATAAATGAAGG CCCAT ACA GTGGG TTTTTTAGTTTCATG CPj0159 201484 - 201176 - | hypothetical protein pfkA_1 203414 - 201780 - | diphosphate--fructose-6-phosphate 1-phosphotransferase CPj0161 204245 - 203418 - | acyltransferase CPj0162 205451 - 204423 - | hypothetical protein CPj0163 205649 - 206020 + | hypothetical protein CPj0164 206121 - 206624 + | hypothetical protein CPj0165 206621 - 207208 + | hypothetical protein CPj0166 207253 - 207588 + | hypothetical protein CPj0167 207929 - 207597 - | hypothetical protein CPj0168 208264 - 208037 - | hypothetical protein CPj0169 209124 - 208330 - | hypothetical protein TERM 208 209035 - 209024 - G 71 -4.4 -4.81863 | opp_overlap 209014 AAAGCGATAACAAAA GAAG TTAT CTTC ACTAATCTACTTTCA TERM 209 209503 - 209521 + r 91 -5.2 -5.81032 | opp_overlap 209503 TCGACTCTCTTGAAA GCTTCTTC TCT GGAGACGC TTTTTTTTAACATTA CPj0170 210649 - 209645 - | hypothetical protein guaA 212058 - 210769 - | GMP synthase TERM 210 210935 - 210953 + g 89 -11.8 -3.35706 | opp_overlap 210934 TCTACAGCACGTAAT GCTATGGT ATA ACCATAGC TTCTACAATCTCCTT guaB 212800 - 212060 - | inosine 5'-monophosphase dehydrogenase TERM 211 212137 - 212151 + g 71 -4.2 -4.77986 | ATTCAGTAATTCGAA CAAAGG AAG CCTTAG TTTTTAAATCTTTGA TERM 212 213221 - 213251 + r 77 -9.2 -3.24289 | opp_overlap 213224 213241, overlap 213215 213216 213224 TCCTTCGAATCTTAA GAAGAAATTTCTTT GGA ACAGAAGTTTCTTC TTCCGTGTTTAGGCT CPj0173 213610 - 213335 - | hypothetical protein CPj0174 213880 - 214350 + | hypothetical protein CPj0175 214521 - 214901 + | hypothetical protein TERM 213 216074 - 216093 + G 72 -9.4 -3.23274 | opp_overlap 216071, overlap 216069 TTGCTACAACGAGCA TGTCTGAT GGCT ATCAGACA TTAACTTGTACGACA CPj0176 214909 - 216144 + | hypothetical protein TERM 214 216193 - 216146 - T 85 -9.4 -3.91032 | gap 1, opp_overlap 216152 216155, overlap 216148 216150 216155 TAATTACTGTATAAA TAG-AGTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATTTGCTT TCTAGAGAACTCATC TERM 215 216190 - 216148 - T 91 -12.2 -3.54 | opp_overlap 216152 216155, overlap 216146 216150 216155 ATTACTGTATAAATA GAGTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATTTG CTTTCTAGAGAACTC TERM 216 216188 - 216150 - T 100 -14.8 -3.34244 | opp_overlap 216152 216155, overlap 216148 216146 216155 TACTGTATAAATAGA GTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATT TGCTTTCTAGAGAAC TERM 217 216152 - 216186 + T 100 -21.8 -4.13995 | opp_overlap 216150 216148 216146 216155, overlap 216155 CTGTATAAATAGAGT TAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTA TTTGCTTTCTAGAGA TERM 218 216155 - 216183 + T 100 -19.1 -4.18676 | opp_overlap 216150 216148 216146 216155, overlap 216152 TATAAATAGAGTTAA GACATCCCCTTAA GTT TTAAGGGGATGTC TTATTTGCTTTCTAG TERM 219 216183 - 216155 - T 100 -19.1 -3.22943 | opp_overlap 216155 216152, overlap 216150 216148 216146 TATAAATAGAGTTAA GACATCCCCTTAA GTT TTAAGGGGATGTC TTATTTGCTTTCTAG CPj0177 217082 - 216228 - | hypothetical protein CPj0178 217675 - 217409 - | hypothetical protein CPj0179 218026 - 217676 - | hypothetical protein CPj0180 218529 - 217975 - | hypothetical protein CPj0181 218798 - 218397 - | hypothetical protein accC 220318 - 218954 - | acetyl-CoA carboxylase biotin carboxylase subunit TERM 220 219859 - 219870 + g 78 -4.4 -5.10077 | opp_overlap 219859 CGGCTTTAATAACAA TAGG GAAA CCTA TTTTTTCAGCTATTT accB 220818 - 220315 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit efp_1 221398 - 220841 - | elongation factor P TERM 221 221170 - 221158 - G 80 -2.7 -5.58209 | CTAAATCTAAAAAAA GATAA CTT TCATC TTCAAGATATAAATA rpe 222074 - 221385 - | ribulose-phosphate 3-epimerase TERM 222 221895 - 221880 - G 77 -6.2 -4.59773 | opp_overlap 221880 GTGGACTTCTAAAAA TAGATC CGTA GATCTA TTAATGGCAGCAATG TERM 223 223413 - 223403 - g 75 -5.4 -4.89838 | TCAAGAAATAGAAAA GTTG GCC CAAC ATGAAACATCTTTGC CPj0186 222522 - 223694 + | hypothetical protein TERM 224 223730 - 223759 + F 100 -15.3 -6.09133 | opp_overlap 223730 GACTTCCTTAGAAAA TAAGCAGTAAAGT TTTA ACTTTACTGCTTA TTTTTTTTTGAAATG TERM 225 223759 - 223730 - f 100 -15.3 -4.3739 | opp_overlap 223730 GACTTCCTTAGAAAA TAAGCAGTAAAGT TTTA ACTTTACTGCTTA TTTTTTTTTGAAATG TERM 226 224627 - 224614 - g 70 -5.3 -4.47551 | opp_overlap 224620, overlap 224626 AGCTAAGGCAGAAAA CCTTT GTCG AAAGG AATTTCCATTATTCC CPj0187 223871 - 224671 + | methylase CPj0188 224734 - 226026 + | hypothetical protein TERM 227 226152 - 226119 - f 85 -12 -3.05268 | gap 1, opp_overlap 226122 226123, overlap 226122 CAACTACTTTCAACA GAATCAGGGAAATAC CTTGT GT-TTTCCCTGATTC ATAAAGAATCCGGAC TERM 228 226122 - 226149 + F 73 -8.6 -3.14931 | gap 1, opp_overlap 226122 226119, overlap 226123 CTACTTTCAACAGAA TCAGGGAA-ATAC CTT GTGTTTTCCCTGA TTCATAAAGAATCCG TERM 229 226149 - 226122 - f 71 -7.9 -3.66784 | gap 1, opp_overlap 226122 226123, overlap 226119 CTACTTTCAACAGAA TCAGGGAAATAC CTTGT GT-TTTCCCTGA TTCATAAAGAATCCG TERM 230 227360 - 227393 + G 79 -3.1 -5.26119 | opp_overlap 227362, overlap 227361 227362 227388 ATAACCCGCTATTGA AATTGTCATGCTCCA TGTC TGGAGCATGGAAAAA TTTTCTTTTTAAAGG TERM 231 227362 - 227391 + G 72 -10.1 -2.83668 | opp_overlap 227362, overlap 227361 227360 227388 AACCCGCTATTGAAA TTGTCATGCTCCA TGTC TGGAGCATGGAAA AATTTTCTTTTTAAA TERM 232 227391 - 227362 - g 70 -7.9 -3.65199 | opp_overlap 227362 227361 227360 227388 AACCCGCTATTGAAA TTGTCATGCTCCA TGTC TGGAGCATGGAAA AATTTTCTTTTTAAA TERM 233 227459 - 227437 - g 80 -2.6 -5.46657 | opp_overlap 227437, overlap 227421 227417 227438 CACTTTAATAAAAAA TGGCAGGAGA TTC TCTCTCCCCA CTTCTCTTACGCTGA TERM 234 227569 - 227559 - g 73 -5.4 -4.67608 | TACTGCAAGAGAAAA TGAG CTG CTCA TCCATGCAAAATTTG TERM 235 227886 - 227873 - g 71 -6.7 -4.23434 | CAAAAGACTTGAAAA TCCAG GGTT CTGGA GAGATATTTTCTTTG TERM 236 228333 - 228344 + G 74 -4.4 -4.92757 | CTTCTATGATAATGT GTCT AAAG AGAC TTTTATTATTAATGA TERM 237 229026 - 229039 + G 71 -2.4 -5.23292 | GCAATTTGTAGAATC TTGG TTCACT CCAA TTTTCTTTTCTGTAC CPj0189 226696 - 229443 + | hypothetical protein TERM 238 230827 - 230812 - g 74 -6.2 -4.48987 | TCTCTACAATTAAAA CAAACT AATC AGTTTG AAAACTCCCCTGTCG CPj0190 229534 - 230892 + | hypothetical protein TERM 239 230929 - 230894 - T 71 -7.6 -3.62096 | opp_overlap 230897 230900, overlap 230895 230897 GGTCAGGATTCTAAA GTATCACTACAGCTGC TCTA GCAGCTGTAGTCCTAT TGAGCAGAGTGGATA TERM 240 230928 - 230895 - T 81 -11.1 -2.77043 | opp_overlap 230897 230900, overlap 230894 230897 GTCAGGATTCTAAAG TATCACTACAGCTGC TCTA GCAGCTGTAGTCCTA TTGAGCAGAGTGGAT TERM 241 230897 - 230926 + T 74 -9.3 -3.02144 | opp_overlap 230897 230895 230894, overlap 230900 CAGGATTCTAAAGTA TCACTACAGCTGC TCTA GCAGCTGTAGTCC TATTGAGCAGAGTGG TERM 242 230926 - 230897 - T 73 -9.3 -2.93089 | opp_overlap 230897 230900, overlap 230895 230894 CAGGATTCTAAAGTA TCACTACAGCTGC TCTA GCAGCTGTAGTCC TATTGAGCAGAGTGG TERM 243 230900 - 230923 + T 100 -15.4 -2.73875 | opp_overlap 230897 230895 230894, overlap 230897 GATTCTAAAGTATCA CTACAGCTGC TCTA GCAGCTGTAG TCCTATTGAGCAGAG glnQ 231606 - 230926 - | ABC amino acid transporter ATPase glnP 232249 - 231596 - | ABC amino acid transporter permease argR 232741 - 232298 - | arginine repressor gcp_2 232825 - 233859 + | O-sialoglycoprotein endopeptidase TERM 244 234905 - 234882 - gf 70 -2.6 -5.0538 | gap 1, overlap 234883 GCTTACGCTAAAAAA CTCTT-TAAAG AAG CTTTAGAAGAA CTCCAAATCACCGCT oppA_1 233805 - 235403 + | oligopeptide binding protein TERM 245 235453 - 235475 + F 73 -6.9 -4.00868 | opp_overlap 235453, overlap 235456 GAATCTTATACTAAA CTGGGTGCC TTTGT GGCACCTCG TTTCCTTCTGACTGC TERM 246 235456 - 235472 + F 74 -9.4 -3.04864 | opp_overlap 235453, overlap 235453 TCTTATACTAAACTG GGTGCC TTTGT GGCACC TCGTTTCCTTCTGAC TERM 247 236136 - 236116 - g 76 -10.5 -3.00525 | CTCTGCGAAACTATA GCACCTCTT TTG AAGAGATGC CCATTACCTGCGGTG oppA_2 235554 - 237137 + | oligopeptide binding protein TERM 248 237203 - 237216 + G 75 -2.3 -5.3321 | TTAAAATGTTTTCAC GATGG ATCA CCCTC TTTTTATTATTCATT oppA_3 237193 - 238500 + | oligopeptide binding protein TERM 249 238494 - 238524 + F 93 -3.3 -6.09888 | gap 1, overlap 238523 CAAATATACCTATTT CCCCTAGACAAAAG AAGT CTTTGGTA-AGGGG TTTTTTTTATTGAAG oppA_4 238784 - 240364 + | oligopeptide binding protein oppB_1 240657 - 241601 + | oligopeptide permease oppC_1 241632 - 242486 + | oligopeptide permease oppD 242479 - 243333 + | oligopeptide transport ATPase oppF 243330 - 244118 + | oligopeptide transport ATPase CPj0203 244623 - 245420 + | hypothetical protein CPj0204 245432 - 245620 + | hypothetical protein CPj0205 245748 - 245945 + | hypothetical protein CPj0206 246024 - 246779 + | hypothetical protein TERM 250 247562 - 247550 - g 80 -6.3 -4.7497 | overlap 247553 247555 TCTACCCACCAAAAA TCACA TCT TGTGA AGAGGCTATCCGATC TERM 251 247657 - 247667 + G 71 -6.8 -4.1413 | TTTTTCCTCCTTGTA GTCC TCT GGAC TTTTGGAGATCTCTT ybhI 246823 - 248235 + | dicarboxylase translocator TERM 252 248293 - 248330 + F 100 -15.1 -2.80622 | opp_overlap 248293 248297, overlap 248296 248303 TATTTTGTGAAATAT GAAAGCTAAATCATAGG ACCA CCTGTGATTTAGCCTTC TGTCATAAGCTCTCT TERM 253 248330 - 248293 - f 100 -15.1 -2.60813 | opp_overlap 248293 248296 248303, overlap 248297 TATTTTGTGAAATAT GAAAGCTAAATCATAGG ACCA CCTGTGATTTAGCCTTC TGTCATAAGCTCTCT TERM 254 248296 - 248327 + F 89 -11 -3.54951 | opp_overlap 248293 248297, overlap 248293 248303 TTTGTGAAATATGAA AGCTAAATCATAGG ACCA CCTGTGATTTAGCC TTCTGTCATAAGCTC TERM 255 248326 - 248297 - f 100 -12.3 -4.00532 | opp_overlap 248296 248293 248303, overlap 248293 TTGTGAAATATGAAA GCTAAATCATAGG ACCA CCTGTGATTTAGC CTTCTGTCATAAGCT TERM 256 249334 - 249310 - g 70 -9.3 -2.8478 | opp_overlap 249311, overlap 249309 249313 ACCACTTCATTAAAC TTATGGGACGC TCA GCATCCCATAT TGCTTTGGAATGTGC TERM 257 249311 - 249333 + G 80 -10.6 -3.53745 | opp_overlap 249310 249309 249313 CCACTTCATTAAACT TATGGGACGC TCA GCATCCCATA TTGCTTTGGAATGTG TERM 258 249331 - 249313 - g 76 -11 -2.67981 | opp_overlap 249311, overlap 249310 249309 ACTTCATTAAACTTA TGGGACGC TCA GCATCCCA TATTGCTTTGGAATG TERM 259 250017 - 250005 - g 80 -2.7 -5.46698 | CCTAAAATTAAAAAA TACCT CGT AGATA TAGGAAGCACGGCAT pfkA_2 248568 - 250220 + | diphosphate--fructose-6-phosphate 1-phosphotransferase CPj0209 250651 - 250890 + | hypothetical protein CPj0210 251999 - 251052 - | hypothetical protein TERM 260 251180 - 251201 + g 74 -4.5 -4.77719 | TACTTTTAGCAATTG CAAACTCAA GCTC TTTAGTTTG TTTTATTCCCTTTTC TERM 261 251805 - 251834 + g 78 -10.3 -3.38072 | gap 1 AGCATTCCACGCATC GAT-TGCTTTTTGA GAC TCAAAAAGCACATC TTCATCTTCCGTAGC CPj0211 252371 - 252075 - | hypothetical protein CPj0212 253681 - 252500 - | hypothetical protein TERM 262 253130 - 253142 + g 74 -6.3 -4.43012 | TGCCTCTTTACACTG CTCTA AAA TAGAG TTTTGCTCTTGGGCT TERM 263 253428 - 253401 - G 79 -11.4 -2.52896 | opp_overlap 253390 253400 TTAGGCTCTAATCCA TAGCGCTCCTTA AATT TAAGAAGCGCCA ATCCTATACTTATTA CPj0213 253908 - 253729 - | hypothetical protein CPj0214 255279 - 254065 - | hypothetical protein CPj0215 256637 - 255378 - | hypothetical protein TERM 264 255557 - 255580 + g 75 -8.3 -3.75332 | opp_overlap 255557 CATACTCCTCTAAGA CTTTCTCTT GTTCCG AAGAGAAAG TTTGAGTTAAAAACT CPj0216 257230 - 256793 - | hypothetical protein ypdP 257518 - 258204 + | hypothetical protein CPj0218 258680 - 258201 - | hypothetical protein TERM 265 258757 - 258730 - H 73 -3.6 -5.13722 | overlap 258725 TTCATTAAAATAAAA GTTTTAAAAAGA TTAA TTTTCTTAAAAC AAAATATCCCCAATA TERM 266 259645 - 259661 + G 76 -10.9 -2.62184 | overlap 259647 CGTTTTGTTGAGGAT GAGCCAT TCG ATGGCTC TGCTATCGGAGGCAG TERM 267 259704 - 259728 + G 86 -10.1 -4.03234 | opp_overlap 259690, overlap 259690 CCTTCAAGAAATGTC TGAAGTGGTTA AAA TCACCACTTCA TTTCTATCAAAAGAA tgt 258979 - 260097 + | queuine tRNA-ribosyltransferase TERM 268 260241 - 260221 - f 95 -2.7 -6.22691 | opp_overlap 260221, overlap 260225 TAAGAATAAAAAAAA TTAATTTTT ATT AAAAAATAA TTAATTTATCGGATT TERM 269 260399 - 260382 - g 83 -9.1 -4.07868 | CGATATTCAGAGAAA CGCCCTC GAAA GAAGGCG TGGCATATAAACTTC CPj0220 260318 - 260863 + | hypothetical protein TERM 270 260962 - 261010 + F 100 -14.8 -3.78934 | CGAAGTACCTATACG TAGCAGCTACTAAGAAAAAAGG AATCC CCACTTCTCTTAGTAGCTGCTA TTATTATAAAAGACG CPj0221 261279 - 261689 + | hypothetical protein CPj0222 262126 - 262467 + | hypothetical protein CPj0223 262578 - 262958 + | hypothetical protein TERM 271 262990 - 262965 - f 71 -6.3 -4.16033 | gap 1, opp_overlap 262965 262962 262973, overlap 262970 262973 TGCAAATAACAACAA TTAATCCACGCC TAC GGCGT-AATTAA ATTGTATCTTTTTAG CPj0224 263057 - 263299 + | hypothetical protein TERM 272 263737 - 263751 + G 82 -8.6 -4.33621 | opp_overlap 263737 263739 AATTGCTTTAGCCAA CATAGG TTT CCTATG TTTATTACTTAGATG TERM 273 263973 - 263951 - g 75 -8.4 -3.84284 | opp_overlap 263957 263960 263964, overlap 263954 GCAAAAGTTATGAAA GAAGGAGCCG AAG CAGCTTCTTC AATTAAACAAGCTGT CPj0225 263495 - 264166 + | hypothetical protein TERM 274 264225 - 264207 - g 80 -10.3 -3.43109 | overlap 264205 CATACTATGCAAACA CCCTGGA GTTCA TCCAGGG AACTCAAAGTCTATG CPj0226 264188 - 264592 + | hypothetical protein dsbB 265038 - 264628 - | putative disulfide oxidoreductase dsbG 265732 - 265031 - | disulfide bond chaperone CPj0229 265950 - 267185 + | hypothetical protein CPj0230 267875 - 267195 - | hypothetical protein TERM 275 267261 - 267273 + g 74 -4.8 -4.84539 | TTCTTTCTTAGCTTC GCGT TCGTC ACGC TTTTCTCTTTGGTTC tauB 268579 - 267872 - | nitrate/iron ABC transporter ATPase TERM 276 268339 - 268351 + g 91 -7.7 -4.76041 | AAGCCGTACGCCAAG GAAGC AGG GCTTC TTTTTGCTGCATATA CPj0232 269744 - 268851 - | 5'-methylthioadenosine nucleosidase TERM 277 269019 - 268996 - G 77 -8.2 -3.98913 | TTCACACCTAAACAA GGAATGCTAT ATTC ATAGCATACC TGAGAAACAGCGCCG TERM 278 269109 - 269092 - G 73 -9.9 -3.05194 | overlap 269084 269091 AAGGAAAGAAAATAG TTTCGCG ACAT CGCGAAA GACTCGCCTGTAGCA CPj0233 270046 - 269867 - | hypothetical protein TERM 279 270135 - 270115 - R 100 -11.9 -6.04953 | opp_overlap 270115 ATATAAATAAAAAAA CCATTGCCA ACC CGGCAATGG TTCTTAAAACACAAA TERM 280 270115 - 270135 + r 90 -11.2 -3.61398 | opp_overlap 270115 ATATAAATAAAAAAA CCATTGCC AACCC GGCAATGG TTCTTAAAACACAAA CPj0234 270862 - 270167 - | hypothetical protein TERM 281 271180 - 271153 - g 73 -7.2 -4.22041 | gap 1, opp_overlap 271153 AAAGCTTAATACAAA GAACTTATGAGAA TGC TTCCCA-AAGTTC TCTATTAGATAAAAT kdsB 271038 - 271802 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 282 271806 - 271821 + G 73 -9 -3.53343 | opp_overlap 271805 271808 GCATATTTTTAACAG GAGGAG TTGT CTCCTC TTTAGGAAAAGGGTT pyrG 271778 - 273391 + | CTP synthetase TERM 283 273691 - 273676 - g 72 -7.6 -3.89346 | overlap 273659 TTTCTACGGTAGAAA TCATCC TATG GGATGA ACGGCTTTCTTCAGT TERM 284 273779 - 273769 - g 71 -3.2 -4.99134 | ATCGGAAAGGAAAAA CAGA TTC CCTG GCTGCAACATTAATC TERM 285 273828 - 273802 - g 73 -8.2 -3.68936 | CATTAATCTTAACAA GTTTTCTAGATA GCT TACCTAAAAAAC TAACCTTGTAATCAT yggF 273384 - 273839 + | Holliday junction resolvase-like protein TERM 286 274438 - 274380 - g 74 -7.7 -4.02911 | gap 1, opp_overlap 274396, overlap 274395 274399 TTTAAATAAACATAA GCTTTTCTATAA-AAATCAAGACCAAGG GAAA CCCTGGTCCCGTGTCATTATAGAAAAAC CTTTTGGAAGAGACT TERM 287 274422 - 274395 - g 80 -6.2 -4.82901 | opp_overlap 274396, overlap 274380 274399 GCTTTTCTATAAAAA TCAAGACCAAGG GAAA CCCTGGTCCCGT GTCATTATAGAAAAA TERM 288 274418 - 274399 - g 84 -10 -3.88001 | opp_overlap 274396, overlap 274395 274380 TTCTATAAAAATCAA GACCAAGG GAAA CCCTGGTC CCGTGTCATTATAGA TERM 289 275317 - 275329 + G 91 -7.7 -4.79826 | GGAGATGAAGTTATG GCTTC TTG GAAGC TTTTTACTCCTGTAT zwf 273925 - 275463 + | glucose-6-phosphate 1-dehydrogenase TERM 290 275954 - 275977 + G 71 -3.2 -5.05782 | gap 1, opp_overlap 275959 TTATGTTAGGACTAG GAGAAGATGGT CAC ACCCT-TTCTC TTTTTTCCAATACCT TERM 291 276189 - 276175 - g 90 -7.2 -5.24796 | GGTAGAGAAGAAAAA CTCTAT CCT ATAGAG CGTGTAGGTAGGGAC devB 275689 - 276297 + | 6-phosphogluconolactonase CPj0240 277483 - 276317 - | hypothetical protein CPj0241 278976 - 277822 - | hypothetical protein TERM 292 278692 - 278702 + g 70 -2.6 -5.0133 | CAGGGGACAACACCC TATT CCA AATA TTTTTTCAAAAAATC CPj0242 279540 - 279106 - | hypothetical protein TERM 293 279741 - 279711 - R 100 -12.8 -5.1244 | opp_overlap 279711 279713 CCATGAATATAAAAA TAGAGGTCTTTCTA GCT TAGAAAAACCCCTA TCTATAGTTATTACC CPj0243 280177 - 279752 - | hypothetical protein TERM 294 280240 - 280199 - H 78 -7.7 -4.15044 | CCTCCCTTTAACAAA TTTTAATAAAAAAACTAAA TAAT TATAGTTTATTTATTAAAA AAAATAAAGTTATAT adk 280540 - 281181 + | adenylate kinase ydhO 281267 - 282124 + | polysaccharide hydrolase-invasin repeat-containing protein TERM 295 282139 - 282108 - T 95 -8.9 -4.84359 | opp_overlap 282108 282113, overlap 282113 282133 GGATCCCTAGAAAAA GAAAAGCCTTTCT GTAATA AGAAAGGCTTTTT CCAAAAACGATTCGA TERM 296 282134 - 282113 - T 95 -8.8 -5.35224 | opp_overlap 282108 282113, overlap 282108 282133 CCTAGAAAAAGAAAA GCCTTTCT GTAATA AGAAAGGC TTTTTCCAAAAACGA TERM 297 282113 - 282134 + T 89 -8.8 -4.56597 | opp_overlap 282108 282113 282133, overlap 282108 CCTAGAAAAAGAAAA GCCTTTCT GTAATA AGAAAGGC TTTTTCCAAAAACGA TERM 298 282191 - 282202 + T 70 -2.2 -5.38047 | CTTAGAGAATTGGAA GCTT TTAC GAGC TTTTTTATGTCCGTA rpsI 282574 - 282170 - | 30S ribosomal protein S9 TERM 299 282609 - 282625 + r 75 -8.1 -3.84825 | overlap 282614 ATCTAATAAAATTGG CTTTTGA GAT TCAAAAG TTTCGTATGAATCCC rplM 283037 - 282588 - | 50S ribosomal protein L13 ycfV 283949 - 283269 - | ABC transporter ATPase TERM 300 283487 - 283499 + g 73 -5.5 -4.63527 | opp_overlap 283476 283487 TTAACGCTCTAGCAA TAGCG ACT CGCTG TTTTTCCCCTCCTGA CPj0249 285463 - 283952 - | hypothetical protein TERM 301 284145 - 284162 + g 85 -5.7 -5.2422 | AAATAGTTCAGTGCT TTTACAA TGAA TTGTAAA TTTTTTAATGTAATT TERM 302 284480 - 284493 + g 77 -3.9 -5.20328 | GACACCTAAGGAAGT TAGAA TATT TTCTA TTTGTTTTTTTACAA rpmG 285679 - 285521 - | 50S ribosomal protein L33 TERM 303 285717 - 285701 - g 71 -4.5 -4.63218 | opp_overlap 285701 GTCCTTTTAAGAAAA TAGTAAA TCG CTTACTA TGCTATATTTCTTTT TERM 304 286090 - 286106 + G 72 -9.5 -3.10641 | opp_overlap 286088 GATGAGCTTAAACCC TGGATGT CAC ACATCCA TTACCTACTAGGTTC TERM 305 286671 - 286655 - g 70 -7.3 -3.76224 | opp_overlap 286641 CTTCTAGGGAGCAAA TCCTAGG ATT CCTAGAA AAATTACGTGCCAAG TERM 306 287194 - 287146 - g 89 -6.2 -5.40072 | gap 2, opp_overlap 287146 287149 287150, overlap 287147 287154 CGTGTTGTAAAAAAA TCTCAGAA-CC-AAGCTTTGCTAA AAA CTAGCAAAGCTTAGGGTCCTGTGG TTAGTTACCAAAAGG TERM 307 287193 - 287147 - g 84 -9.7 -3.83561 | gap 2, opp_overlap 287146 287149 287150, overlap 287146 287154 GTGTTGTAAAAAAAT CTCAGAA-CC-AAGCTTTGCTAA AAA CTAGCAAAGCTTAGGGTCCTGTG GTTAGTTACCAAAAG TERM 308 287184 - 287154 - g 100 -14.2 -3.47063 | opp_overlap 287150 287149 287146, overlap 287147 287146 AAAAAAATCTCAGAA CCAAGCTTTGCTAA AAA CTAGCAAAGCTTAG GGTCCTGTGGTTAGT CPj0251 285682 - 287184 + | hypothetical protein CPj0252 287707 - 287195 - | hypothetical protein CPj0253 288078 - 287569 - | hypothetical protein CPj0254 288884 - 288078 - | hypothetical protein CPj0255 289787 - 288948 - | hypothetical protein TERM 309 289476 - 289459 - G 78 -2 -5.47159 | overlap 289461 289471 TTGGAACAGAAAAAA TATTCG GGAGAA CGAACA TAATTCGCTGGCACC TERM 310 289966 - 290016 + r 100 -14.2 -3.63515 | opp_overlap 289969, overlap 289969 CCAAGTGATATAAGG AAATCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGATGA TTATTCAACGTAAGG TERM 311 289969 - 290013 + r 100 -20.3 -2.93549 | opp_overlap 289969, overlap 289966 AGTGATATAAGGAAA TCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGA TGATTATTCAACGTA TERM 312 290013 - 289969 - R 100 -24.7 -4.04576 | opp_overlap 289969 289966 AGTGATATAAGGAAA TCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGA TGATTATTCAACGTA CPj0256 290886 - 290017 - | hypothetical protein TERM 313 290671 - 290682 + g 75 -3 -5.1523 | GGTGCTTGTAGGTCT GATA TTTA TATC TTTTTGTATTGTAAG CPj0257 291749 - 290886 - | hypothetical protein CPj0258 292138 - 291752 - | hypothetical protein CPj0259 292653 - 292060 - | hypothetical protein TERM 314 293175 - 293187 + r 72 -4.8 -4.66264 | TCTGAAATTAATCTT CCTC AACTG GAGG TTTTTGAGAGTTTTC secA_1 293667 - 293167 - | protein translocase subunit TERM 315 293375 - 293388 + g 75 -3.1 -5.2189 | TCTTCTTTTGCCTGA GCTTT CTTA AGAGC TTTTTTACTCATTAC TERM 316 293770 - 293724 - H 77 -4.7 -5.10163 | gap 1, opp_overlap 293737 AAGCTCAAAATAAAA TCCAAAGTCAAATGCAAAAACC TATT GCTTTTTTC-TTTAACCTTGGA ACCTAGTACTCGTTA TERM 317 293737 - 293751 + H 80 -2.8 -5.64421 | opp_overlap 293724 AATCCAAAGTCAAAT GCAAAA ACC TATTGC TTTTTTCTTTAACCT ydaO 293924 - 294658 + | PP-loop superfamily ATPase surE 294713 - 295558 + | stationary phase survival protein SurE TERM 318 295582 - 295606 + F 79 -8 -4.0031 | opp_overlap 295584, overlap 295571 TAGTCTTTGGTATCA GAGGTCTTTT TTTAC AAAAGATCTC TTGTTTAATCGAGAT TERM 319 295816 - 295800 - f 75 -10.1 -2.62933 | CAATTGGTTAGAGCA CCGCCCT GTC AAGGCGG AAGTTGCGGGTTCGA yqfU 295871 - 296761 + | hypothetical protein ubiD 297352 - 296774 - | aromatic acid decarboxylase ubiA 298242 - 297349 - | prenyltransferase TERM 320 297578 - 297555 - G 75 -3.2 -5.15117 | opp_overlap 297569, overlap 297569 CAAAACCTGAAAAAA TATAAGCAAG ATAA CTTACCCATA AGTTTACTTTTGCAA TERM 321 298204 - 298185 - G 82 -2.2 -5.61596 | opp_overlap 298186, overlap 298186 ATGCTGATAAAAAAA GTATTGAA AATA TTGAATAC TTAAAATTAACTAAA TERM 322 298329 - 298357 + H 90 -8.1 -4.89852 | opp_overlap 298335, overlap 298330 298331 298355 ATCCCCCCAATCTTT TTAGAACCCCCTA TGT TAGGGGGTTCGGC TTTTTATGCCTCTAC TERM 323 298330 - 298356 + H 90 -11.6 -3.53188 | opp_overlap 298335, overlap 298329 298331 298355 TCCCCCCAATCTTTT TAGAACCCCCTA TGT TAGGGGGTTCGG CTTTTTATGCCTCTA TERM 324 298331 - 298355 + H 87 -12.9 -2.7119 | opp_overlap 298335, overlap 298330 298329 CCCCCCAATCTTTTT AGAACCCCCTA TGT TAGGGGGTTCG GCTTTTTATGCCTCT TERM 325 298351 - 298335 - H 91 -12.3 -3.30159 | opp_overlap 298331 298330 298329 CCAATCTTTTTAGAA CCCCCTA TGT TAGGGGG TTCGGCTTTTTATGC CPj0266 298806 - 299501 + | hypothetical protein TERM 326 299570 - 299525 - f 78 -2 -5.64873 | overlap 299527 TTTAAGAACAAAAAA GGGTTTTAAAGTAGGTAAAT GAGAAA ACTTACTCACTATAAAACTC TTAAAACTATAAAAA CPj0267 299744 - 300535 + | hypothetical protein CPj0268 300557 - 300943 + | hypothetical protein TERM 327 300969 - 300947 - T 77 -5.5 -4.95155 | opp_overlap 300947 CTTATAGGATAAAAA CAGTGCGAA TGAGT TCCGCCCTG TTTAATACTGTGTTA CPj0269 302072 - 301095 - | dipeptidase ywlC 302947 - 302087 - | SuA5 superfamily-related protein CPj0271 303256 - 303987 + | lysophospholipase esterase dnaX_2 304855 - 303959 - | DNA polymerase III subunit delta' TERM 328 304445 - 304469 + g 95 -12.3 -3.36837 | overlap 304443 304433 CAATCTCTGAACTTT TGCTGTTGTCA ATA TGATAACAGCA TGTTTCGGAGGTTCT TERM 329 304514 - 304502 - G 71 -4.8 -4.62302 | GAAGACTTTTAAAAA TGCG GAAAT CGCA GCTAAAGTCATTCGA tdk 305466 - 304846 - | thymidylate kinase gyrA_1 307975 - 305471 - | DNA gyrase subunit A TERM 330 307359 - 307376 + g 78 -9.9 -3.53012 | opp_overlap 307355 307354 ACTTGTAAAATCTCA TCCACAG AAGC CTGTGGA TTTGCAAGCAGAAGA gyrB 310408 - 307991 - | DNA gyrase subunit B TERM 331 309317 - 309293 - G 73 -3.5 -5.00884 | ATTCTCTTCAAAAAA GATTGTCAGAG CTT CCCCTACAACC TGTTGAGCCACTGAG CPj0276 310759 - 310412 - | hypothetical protein CPj0277 311532 - 311023 - | hypothetical protein CPj0278 312497 - 311679 - | outer membrane lipoprotein protein CPj0279 313159 - 312494 - | ABC transporter permease TERM 332 312865 - 312855 - G 71 -3.2 -4.93661 | ATAGTAACAACAAAA GGAA TGG CTCC GATAGTGAGAGGAAC TERM 333 313152 - 313163 + g 71 -3 -4.91511 | ATCTGAATAAGATCG GATT GCAT AATC TTTTTCTAATAAAAT dppF_1 314194 - 313169 - | dipeptide transporter ATPase TERM 334 313284 - 313258 - G 73 -7.5 -4.20868 | gap 1, opp_overlap 313265 CTTCCAAAACAATAA TTAGA-AATCCC ATTG GGGATTTTCTAA ATAAATTAATGTTGC TERM 335 313265 - 313276 + g 73 -5.8 -4.43501 | opp_overlap 313258 AACAATAATTAGAAA TCCC ATTG GGGA TTTTCTAAATAAATT TERM 336 314052 - 314037 - G 78 -9 -3.76534 | opp_overlap 314037, overlap 314030 TCAAGAAAGTCTAAA CAACGC AAAA GCGTTG TTTTCCCAGAACCGC TERM 337 314037 - 314052 + g 80 -9 -4.07568 | opp_overlap 314037 314030 TCAAGAAAGTCTAAA CAACGC AAAA GCGTTG TTTTCCCAGAACCGC TERM 338 314255 - 314241 - H 78 -7.2 -4.3821 | AAAATAGAATACAAA GAATCT TGA AGATTC GTTAACCATTAAACT dhnA 314679 - 315728 + | fructose-bisphosphate aldolase TERM 339 315781 - 315766 - g 83 -9 -4.18494 | CACTCCCACTCAAAA CCAACG AAAC CGTTGG GAACATTCACGGTCG TERM 340 316272 - 316288 + G 73 -5.9 -4.46072 | overlap 316274 CTTTTGGATTTTTTC TGGCAAT CCC ATTGCTA TTTCTCTTTCTTGGG xasA 315748 - 317154 + | amino acid transporter CPj0283 317981 - 317151 - | hypothetical protein TERM 341 317194 - 317182 - G 74 -4.1 -5.07652 | opp_overlap 317186 317189, overlap 317186 TTTGGGAAAAGAAAA GAAAG AAG CCTTC CTTGTTGTATGGCAG TERM 342 317222 - 317186 - G 82 -5.8 -5.04377 | opp_overlap 317186 317189, overlap 317182 GGAAAAGAAAAGAAA GAAGCCTTCCTTGTTG TATGG CAGCCTGGAAAGCTTC TGGATTCAAATTTGC CPj0284 318667 - 318170 - | hypothetical protein CPj0285 320217 - 318670 - | hypothetical protein TERM 343 319301 - 319313 + g 75 -3.4 -5.09225 | GTAAGAAGATTAGGG TCGT ATGCA ACGA TTTTTTCAATACACT mgtE 321681 - 320269 - | Mg++ transporter TERM 344 320417 - 320401 - G 76 -2.9 -5.33405 | overlap 320402 320403 CTTAGCAAAGAAAAA TGGGGAT AAA ACCCCTA GAGTCGTAGCTGTGA TERM 345 321444 - 321432 - G 74 -4.8 -4.77759 | ACAACCTACGAAAAA TCGC CCACC GCGA AGCAGAATCTGTATT CPj0287 323843 - 321708 - | hypothetical protein TERM 346 323970 - 323918 - R 73 -3.8 -5.14163 | gap 1, overlap 323921 ACCCACTAATAAAAA CTAGTTTTTGAAAAGAATTCTAAAA ACCT TCTTTTAAT-CTTTTCAAAAACAAG AACATCTATTTCTTA CPj0288 325338 - 324190 - | hypothetical protein TERM 347 324878 - 324889 + g 70 -5.8 -4.30034 | opp_overlap 324872 324878 TCTAGATAAGAGCAA GCAC TCAC GTGC TTTTCATCGAATTTT TERM 348 325518 - 325533 + G 79 -7.6 -4.30987 | GGTTTAGGAAGTGTG CAATCC CCAT GGATTG TTTATTCTGCCGAAT TERM 349 325937 - 325926 - g 71 -3 -5.06414 | TTTCTTCAAGAAAAA GAAA AACA TTTC GTAAATCAATTTTTT aaaT 325434 - 326621 + | neutral amino acid (glutamate) transporter CPj0290 326664 - 328148 + | Na-dependent transporter TERM 350 328190 - 328159 - f 75 -9.6 -2.59526 | overlap 328162 TATAAATCCAATCGA TAATTCTACTCTGA ATAT TCAGGGTAGAATCA CAGCATTTTGGAAAG TERM 351 328187 - 328162 - f 79 -9.1 -3.43965 | overlap 328159 AAATCCAATCGATAA TTCTACTCTGA ATAT TCAGGGTAGAA TCACAGCATTTTGGA incB 328289 - 328819 + | inclusion membrane protein B incC 328850 - 329461 + | inclusion membrane protein C CPj0293 329571 - 332348 + | hypothetical protein TERM 352 332927 - 332912 - g 81 -4 -5.27938 | overlap 332913 ATCTCTAAAGAAAAA CTAGAG TCTC CTCTAA ATTTAAAACCTTTAG TERM 353 332978 - 332961 - g 70 -7.1 -3.83026 | GTTTTGGAGAGGAAA GCTTATT CAAT AATAAGC CCAGGGAATACAATG CPj0294 332714 - 333127 + | cAMP-dependent protein kinase regulatory subunit acpP 333485 - 333246 - | acyl carrier protein fabG 334387 - 333641 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 354 334350 - 334360 + g 78 -4 -5.1101 | CCTCGAGATCCTCCA GTTA CTA TAAC TTTTTTGCCTACTAA fabD 335319 - 334393 - | acyl-carrier-protein S-malonyltransferase fabH 336343 - 335336 - | 3-oxoacyl-(acyl carrier protein) synthase III recR 336438 - 337040 + | recombination protein RecR yaeT 337405 - 339777 + | omp85 analog CPj0301 339872 - 340387 + | ompH-like outer membrane protein TERM 355 340589 - 340576 - g 86 -6.7 -5.0133 | opp_overlap 340575 340576 TAGCTTTCTAAAAAA CACCA AAGC TGGTG CTATTATTTTATCTA lpxD 340409 - 341491 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CPj0303 342580 - 341540 - | hypothetical protein TERM 356 341570 - 341591 + g 89 -6.7 -5.29846 | ACGTACTCTTCTTTT TATCATGAG AATT TTCATGATA TTTTTATTTAAAATT TERM 357 342290 - 342264 - G 71 -9 -3.30771 | CTACATCCGGGAGAA TAAAAAAATAAC TGA GCTATTTTTTTA TCCATCGAAGTTAAC TERM 358 342345 - 342363 + g 85 -2.4 -5.82316 | overlap 342346 TCCAACTCTTCATTT TTGAATGG CAA CCATTGAG TTTTTTTTAAGTAGT TERM 359 343240 - 343228 - g 100 -6.3 -5.95946 | opp_overlap 343228 TCAAGAACAAAAAAA TAGAG TTT CTCTA TGCTTTATCGGAGAT pdhA 342755 - 343783 + | pyruvate dehydrogenase alpha TERM 360 344336 - 344325 - g 75 -7.2 -4.35874 | GAATATAACTTAAAA GGGG AAGT CCCC ACCGAAGAATATCTC pdhB 343776 - 344762 + | pyruvate dehydrogenase beta pdhC 344767 - 346056 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 361 346070 - 346115 + T 74 -9.1 -3.12874 | opp_overlap 346074, overlap 346073 346101 AGCAATCTTTGAACA AAAAGGACTCTTTCTATAGCT CCTT GGCTATGGAAAGAGTCCCTGA TTCCATCCTGTCTAT TERM 362 346073 - 346112 + T 100 -15.2 -2.7674 | opp_overlap 346074, overlap 346070 346101 AATCTTTGAACAAAA AGGACTCTTTCTATAGCT CCTT GGCTATGGAAAGAGTCCC TGATTCCATCCTGTC TERM 363 346111 - 346074 - T 100 -15.8 -5.06816 | opp_overlap 346073 346070 346101 ATCTTTGAACAAAAA GGACTCTTTCTATAGC TCCTTG GCTATGGAAAGAGTCC CTGATTCCATCCTGT glgP 348608 - 346134 - | glycogen phosphorylase TERM 364 347550 - 347535 - G 70 -7.6 -3.7108 | ATTGGTATAGTTAAA GATGAC TGTA GTCATC TCCCAAGCCTTATCC TERM 365 348699 - 348718 + H 70 -8 -3.32844 | opp_overlap 348698 TAAATAAAAGAGAGC CTATTAAG AGAG CTTAATAG TTCTGAACTAGAGAA TERM 366 349217 - 349195 - g 84 -6.4 -4.93365 | GTCCAGAAGCAAAAA TTAGAGGA TCGGTAC TCCTCTAA ATAATCATCTCTTCG CPj0308 348856 - 349221 + | hypothetical protein dnaA 350596 - 349214 - | chromosomal replication initiation protein TERM 367 349291 - 349313 + g 95 -7.8 -5.0095 | opp_overlap 349293 TAGAAATATCTTGAA TAGCCATG TGAATAT CATGGCTA TTTTCTTCTATTTTT TERM 368 350483 - 350469 - G 73 -7.2 -4.21933 | GTAATTTGAAAAGAA TCTTGA GCT TCAAGA TACAAATTACAAGCA 60IM 353055 - 350668 - | putative inner membrane protein translocase component YidC TERM 369 351051 - 351040 - G 70 -5.8 -4.258 | CCACCCAGGAATAAA CGAG GCTC CTCG TAATAAGAATGATGA TERM 370 351945 - 351963 + g 85 -9.6 -4.10179 | AAACATAGGGCTTTT CTTCCGGA TTC TCTGGAAG TTTGTATACCTTCTG lgt 354060 - 353194 - | prolipoprotein diacylglyceryl transferase TERM 371 353895 - 353860 - G 76 -2.6 -5.40625 | gap 1, opp_overlap 353870, overlap 353853 353861 AGAGTATATAAAAAA GTTTTCTAAAGCCACGC GTA GC-TGGCTTTTGGAAAA ACTTAAATGATCTTT CPj0312 354146 - 354601 + | hypothetical protein acpS 354612 - 354980 + | 4'-phosphopantetheinyl transferase trxB 355907 - 354972 - | thioredoxin reductase TERM 372 355529 - 355543 + g 77 -8.6 -3.91072 | GCCAAAATTCATCGT TTCCTG CTC CAGGAA TTTCTAAACGTTTAG rpsA 356599 - 358341 + | 30S ribosomal protein S1 TERM 373 358364 - 358396 + F 86 -10.2 -3.5754 | gap 1, opp_overlap 358362 358367, overlap 358360 358368 TGCTGGTAATGCAGA GGATCGTATTATTTA GTTC TAAATAATACG-TCC TTAATTTAGCTATTT TERM 374 358368 - 358393 + F 81 -10.7 -2.90283 | opp_overlap 358367 358362, overlap 358364 358360 GGTAATGCAGAGGAT CGTATTATTTA GTTC TAAATAATACG TCCTTAATTTAGCTA TERM 375 358770 - 358757 - gf 72 -8.1 -3.39556 | overlap 358755 AATTTTGGAAGAATA GCTGC TCAC GCAGC ACGACAAATTATCGG TERM 376 359268 - 359256 - gf 76 -6.3 -4.51097 | opp_overlap 359256 TGAACGATGAGAAAA TTGAC ATT GTCAA TTACTCCCCCGTCTC nusA 358442 - 359746 + | transcription elongation factor NusA TERM 377 359809 - 359796 - gf 78 -2.3 -5.49568 | opp_overlap 359796 359808, overlap 359808 AAGCTAAAACAAAAA CTTGC CCAA GCAGG ATCTTCTGAAGCTAA TERM 378 359853 - 359841 - gf 71 -4.1 -4.82901 | opp_overlap 359808, overlap 359808 359843 TCTTCTTCAGAAAAA CCTTC TGC GAAAG AAAAGTCTGTAAAAG TERM 379 360351 - 360340 - gf 74 -5.8 -4.52589 | TTGCTTCAGATAAAA CAGG GAAA CCTG GAACATCTGAAGGTG TERM 380 360686 - 360670 - gf 71 -6.6 -4.19177 | ATCTGGCAACAGAAA TGAAGC TCAAG GCTTCA GAAGTCATTCAAAAG infB 359703 - 362375 + | translation initiation factor IF-2 TERM 381 362728 - 362715 - g 71 -4.5 -4.63586 | overlap 362716 AGATTATATAGAAAA CCTGC TTTG GCAGA TTCAAGAGAAAGAAA rbfA 362389 - 362751 + | ribosome-binding factor A truB 362797 - 363504 + | tRNA pseudouridine synthase B ribF 363482 - 364408 + | bifunctional riboflavin kinase/FMN adenylyltransferase ychF 365480 - 364386 - | translation-associated GTPase TERM 382 366124 - 366156 + G 73 -8.4 -3.66732 | opp_overlap 366126 TTATGCTTATTTTAA CAGCATCACTTCCC TTACT GGGAGCTGTTGCTG TTGTTGGCGTCATTG yscU 365871 - 366953 + | type III secretion system protein TERM 383 368171 - 368201 + G 71 -9 -3.36273 | opp_overlap 368181 ATGCGGCAAGCTCTC TATCAGGATATCGG AAT CCGATACCCTGGCA TTCATGTTCGCACAG lcrD 366953 - 369085 + | low calcium response D TERM 384 369205 - 369180 - g 100 -13.3 -3.31144 | opp_overlap 369181, overlap 369195 CTTGCAGCTGTAGAA GCTGCAGCTGC AAAA GCAGATGCAGC AGAAGTTGTAGCCAG TERM 385 369379 - 369366 - g 75 -2.4 -5.25803 | AAGGCTGAGAAAAAA TCTG AATCTA CAGA AGAGAAGCCTGACAC lcrE 369114 - 370313 + | low calcium response E sycE 370330 - 370773 + | secretion chaperone malQ 370770 - 372350 + | glucanotransferase TERM 386 372353 - 372334 - f 77 -9.4 -3.26722 | overlap 372332 GTTACATTGAGAAGA TCCTTACA GGAC TGTAAGGA TAGCAATAAAACATT rpmB 372567 - 372836 + | 50S ribosomal protein L28 TERM 387 373565 - 373577 + G 78 -9.1 -3.85698 | overlap 373550 GCTACCTTCCTCCAA GGAGC GAA GCTCC TTTATAAAAAAACAA TERM 388 373658 - 373632 - g 81 -12.2 -2.53382 | overlap 373646 ACGATGCGGAATTCA TCCTGGTCGGAG AAT CTCCGGCCGGGA AACGTCGTCCTGAAG CPj0328 372863 - 374617 + | hypothetical protein TERM 389 374643 - 374657 + F 78 -2.2 -5.61881 | overlap 374643 ATTCTATTAAACGTT TAATTA AAT TAGTTA TTTTTATTTTTAAAA TERM 390 375032 - 375010 - g 70 -3.6 -4.77438 | ATCTACTATCAAAAA TTTAAAATTC CCC AAATCTTAAA GCAAGCCAGCAATGT CPj0329 374710 - 375771 + | phopholipase D superfamily protein CPj0330 376297 - 375821 - | hypothetical protein TERM 391 376078 - 376094 + g 72 -6.5 -4.38712 | opp_overlap 376078 GACGCAACTGAGAAA GCAAGAC CTT GGCTTGC TTTTGTCCGAGTAGC TERM 392 376195 - 376206 + g 79 -3 -5.31275 | opp_overlap 376195 CTTCATTCGTAGCAA TTTC CTCA GAAA TTTTTTCTACTAAAG CPj0331 378059 - 376320 - | hypothetical protein TERM 393 376558 - 376580 + g 86 -9.8 -3.92522 | opp_overlap 376554 376558 TACTGATAAATCAAA GGATCTGGAG GAC CTCCAGGACC TTTATGAGCTTCGAG TERM 394 376580 - 376558 - G 76 -7.6 -4.15066 | opp_overlap 376558, overlap 376554 TACTGATAAATCAAA GGATCTGGAG GAC CTCCAGGACC TTTATGAGCTTCGAG TERM 395 377633 - 377616 - G 71 -2 -5.11063 | gap 1, opp_overlap 377619, overlap 377618 AGCATCTAAGAAAAA TC-CCTG CATTT CAGGTGA AATACGGTTTCCCTT CPj0332 378277 - 378155 - | CHLTR T2 protein TERM 396 378201 - 378181 - G 100 -15.5 -6.60239 | opp_overlap 378186 AAAAACAAAAAAAAA CGCAAGGTG AAA CACCTTGCG TAAAAAAACTTATGG TERM 397 378288 - 378330 + r 100 -18.8 -3.2056 | ATCACTCGGATCCGA CTGTCTAGGTATTAAGATTT TGG AGATCTTAATACCGAGACAG TTCCTAACTCTAAAT TERM 398 378369 - 378396 + r 95 -3.4 -6.28631 | gap 1, overlap 378376 CAGGCTTCCTGTCGT TC-CATCACGGGA TAG TCCCGTTCTGCGA TTTTTTTTTAATTTA TERM 399 378376 - 378388 + r 79 -9.1 -3.47063 | overlap 378369 CCTGTCGTTCCATCA CGGGA TAG TCCCG TTCTGCGATTTTTTT CPj0333 378712 - 378419 - | LtuB protein TERM 400 378780 - 378766 - H 70 -2.2 -5.27477 | overlap 378767 ATTTTAATTAAAAAA CTTATT AAG AATAAA CTAATTTTAATCTAA CPj0334 378933 - 379448 + | hypothetical protein TERM 401 380231 - 380217 - gf 76 -10 -2.78395 | opp_overlap 380215, overlap 380214 AATGCGCAGCAATCA CTCCAG TTC CTGGAG GCGTTGGTCCCATGA folD 379439 - 380299 + | methylene tetrahydrofolate dehydrogenase yojL 380272 - 381216 + | hypothetical protein smpB 381649 - 381194 - | SsrA-binding protein TERM 402 381262 - 381274 + g 84 -6.3 -5.00616 | CTATGATCGTACGAC GCTTA TCA TAAGC TTTTTTCCCACGACA TERM 403 381627 - 381637 + g 71 -4 -4.85599 | AGAGCCTTGCGATTA GAAA CAA TTTC TTTTTGTGCCATAAG TERM 404 382608 - 382624 + G 70 -7.3 -3.87075 | ATCACAAAACTTCTT TCTGGAG AAT TTCCAGA TTTCTCCCCCGTCAT TERM 405 382727 - 382742 + G 73 -2.6 -5.09762 | gap 1, opp_overlap 382721 382722, overlap 382730 ATTTACAAATGAGTC CTCTCAC TCC GTGA-AG TTTTCTTTCTTACCC dnaN 381900 - 383000 + | DNA polymerase III subunit beta TERM 406 383156 - 383146 - gf 71 -3.2 -4.96773 | CCAAGGAAAAACAAA CCTC CTA GAAG CGCTTTATGTTTTGT CPj0339 383036 - 383659 + | ATPase CPj0340 383476 - 384120 + | hypothetical protein TERM 407 384668 - 384643 - g 80 -4.7 -5.2166 | GAAGAAGCCAAAAAA GGAAAAGCTAT TCTC ATGGCTCCTCC GAACGCAGGGTCTAC CPj0342 384244 - 385221 + | Omp yaeL 387043 - 385178 - | metalloprotease TERM 408 386331 - 386351 + g 78 -10.5 -3.33696 | overlap 386316 386334 TTCGGACGTAGCTCT GAATTCTCC ATA GGAGAGTTC TTCGTTAGGGGCACC TERM 409 386775 - 386765 - G 75 -3.2 -5.17353 | AGACTTACTAAAAAA TCCC TGA GGAA TATCATAGACAGAGT yaeM 388195 - 387056 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 410 388082 - 388070 - G 70 -2.7 -5.0133 | TAGGTGCTGAAAAAA TAACC TTA GATTA TTTCCATAAGAAGCC ytgD 389298 - 388324 - | integral membrane protein ytgC 390644 - 389298 - | integral membrane protein TERM 411 389705 - 389691 - G 79 -8.6 -4.2243 | opp_overlap 389691 AGAAATATGCCAAAA CACCTT TAA AAGGTG TTCTTGATCCTTTGA TERM 412 389691 - 389705 + g 75 -8.6 -3.79909 | opp_overlap 389691 AGAAATATGCCAAAA CACCTT TAA AAGGTG TTCTTGATCCTTTGA ytgB_1 391426 - 390647 - | rRNA methylase ytgA 392393 - 391410 - | solute-binding family protein TERM 413 392265 - 392246 - G 70 -9.4 -2.79273 | opp_overlap 392244, overlap 392245 392248 CTCTTTCAACACAAT CATGAATC ATGC GATTCATG GATAGTATACAAGGA CPj0350 392889 - 393395 + | hypothetical protein TERM 414 393568 - 393557 - f 82 -3 -5.72053 | CAACGAAATAAAAAA CTAT CAGA ATAG AAAATAAAAGTATTT adt_1 393596 - 395143 + | ADP/ATP translocase TERM 415 395168 - 395195 + F 100 -12.8 -6.11243 | TCTTACTCTTGTTGA TCCCTACCTGCT TTTT AGTGGGTAGGGA TTTTTTTTATTAACT TERM 416 395260 - 395248 - f 74 -6.3 -4.4078 | TTTTTTCAATCAAAA GGTTA TAA TAACC GTGAGACATTCTGGT TERM 417 395864 - 395850 - g 73 -3.6 -4.93877 | overlap 395845 TCGGATTAAATAAAA CACAAA AAG TTTATG GTTTACTTGGGCCCT TERM 418 396524 - 396507 - g 86 -2.7 -5.75478 | overlap 396517 AACTAGAGAAAAAAA TAGAAAG CAGT CTCCCTA TACGATCTTCCCTAT CPj0352 395282 - 396541 + | hypothetical protein TERM 419 396656 - 396644 - g 74 -4.9 -4.8543 | TAATTTTTATAAAAA GAATA CGT TATTC CCAATCGGGAAAAGA TERM 420 396727 - 396704 - g 82 -4.6 -5.40072 | opp_overlap 396707 396726, overlap 396707 CTTTTTTTAAAAAAA GCATAACAAG CTCT CTCGTTATTC TTCTTCTAGAAGCTA TERM 421 396805 - 396792 - g 73 -2.5 -5.10208 | CAATTTCAATAAAAA TTTTA AAAA TAAAA ACATTTCTATTAATA CPj0353 396601 - 396846 + | hypothetical protein TERM 422 397531 - 397515 - g 73 -5.1 -4.68384 | ATCGAGTTAAGAAAA TTGGAGG CAG CCTCGAA GAAGACCTTAGTGAT TERM 423 398195 - 398170 - g 72 -9.8 -2.81072 | overlap 398164 398169 TCCACTCAAGAGAAG CGTCTTCTCC CAACCT GAAGAAGACG AGTCCTCCCTGCTGA CPj0354 396875 - 398218 + | hypothetical protein CPj0355 399597 - 398296 - | hypothetical protein CPj0356 400168 - 399815 - | hypothetical protein CPj0357 401026 - 400175 - | hypothetical protein CPj0358 401460 - 401284 - | hypothetical protein lepA 401721 - 403529 + | GTP-binding protein LepA TERM 424 403590 - 403617 + T 89 -3.4 -5.95286 | gap 1, opp_overlap 403590 TAGTGGTGAACTAAA TCTCGAG-CTACC TAG GGTCTTCTCGAGA TTTTTTATTTTTACT gnd 405067 - 403628 - | 6-phosphogluconate dehydrogenase tyrS 406356 - 405088 - | tyrosyl-tRNA synthetase TERM 425 405719 - 405689 - G 100 -11.8 -4.16016 | opp_overlap 405689 405688 GCATTCGTTAATAAA GGATAGGTAAGGCC GTA GGCCTGACCCAACC CTTTACGGCGAATAA TERM 426 406158 - 406136 - G 75 -9.1 -3.72576 | GCTCCCCCGACTAAA GCTATGGGG GTAAT CCCCAGAGC AGCGAGTCTCTTCAA rpsD 407534 - 406761 - | RNA polymerase sigma factor sigma-28 flhA 409397 - 407649 - | type III secretion system protein TERM 427 408831 - 408809 - G 79 -7.8 -4.30576 | CGTTCACGAGTAAAA GGATACAACT AAT AATTGCATCC CCTTTAACAAAACGA TERM 428 408874 - 408894 + g 95 -2.5 -6.28401 | opp_overlap 408874 408876, overlap 408876 ATGGCAGAGAAGAAA TCCCCTTCT TCT ATAAGGGCA TTTTTTTGTTTTTTG fer4 409675 - 409950 + | ferredoxin IV TERM 429 410906 - 410894 - g 78 -9.1 -3.85969 | overlap 410889 410887 GAAATAAATACAGAA CTCCC TGC GGGAG ATTCAGGAGAACGTT CPj0365 410237 - 411256 + | hypothetical protein TERM 430 411393 - 411381 - f 77 -5.5 -4.88736 | GATGAGGGACAAAAA GGCTC CTA AAGCC TCCAAGATCTTTCCA TERM 431 411624 - 411606 - f 74 -3.2 -5.23292 | opp_overlap 411610, overlap 411610 411613 TTACACAAAAGAAAA TATAGAAT TTT ATTCTCTA ATAAAAATTAAATTA CPj0366 411685 - 412152 + | hypothetical protein TERM 432 412627 - 412649 + F 75 -8.4 -3.75824 | opp_overlap 412627 CAAGTGGAGAAAAAA CTCTGTGTGG CAC CCACTTAGAG TTCTCTTATGAACTA TERM 433 412649 - 412627 - f 84 -6.2 -5.27923 | opp_overlap 412627 CAAGTGGAGAAAAAA CTCTGTGTGG CAC CCACTTAGAG TTCTCTTATGAACTA TERM 434 412769 - 412753 - f 70 -2.3 -5.34309 | overlap 412755 412756 ATTATCAAAGAAAAA GATTTTT TGT AAAAAAC AACAAATTAAGATAT TERM 435 412953 - 412991 + GF 75 -8.2 -3.78034 | overlap 412971 CAGCTCTTATTCTTG CTTTAGCCATAGCTGTAG GGA CTGCAGTTGTTGCTGGAG TTCTTGGTATGCCTC CPj0367 412811 - 413548 + | hypothetical protein CPj0368 413499 - 413819 + | hypothetical protein TERM 436 414243 - 414255 + G 79 -3.3 -5.26316 | overlap 414237 ATTGCTGCTGGCATT TTGGC TAT GCCTA TTTTTTCTGCCGTAG CPj0369 414060 - 415274 + | hypothetical protein CPj0370 415509 - 416624 + | hypothetical protein CPj0371 416856 - 417215 + | hypothetical protein TERM 437 417288 - 417310 + F 80 -9.2 -3.6053 | opp_overlap 417281 GAAAATATGAGAGTG TCTCCTCCTA TTT TAGTAGGAGA TTAATTTGTAAAACA TERM 438 417367 - 417354 - f 70 -3.9 -4.90471 | ATTTAAAATAGAAAA CTATA AAAT TATAG GGCTTGTCATAGAAA CPj0372 417396 - 417713 + | hypothetical protein TERM 439 419482 - 419463 - g 73 -7.2 -4.24183 | opp_overlap 419481 GACAATAAAGAAGAA GCTGCTAT TTCC ATAGCAAC AGAGTTTGGAGCTCT gcpE 418089 - 419930 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CPj0374 419927 - 420673 + | hypothetical protein CPj0375 420830 - 421327 + | hypothetical protein CPj0376 421563 - 422006 + | hypothetical protein TERM 440 422042 - 422011 - T 90 -8.2 -5.10077 | gap 1, opp_overlap 422019, overlap 422019 AAAGAGGTTAAAAAA TCTGA-AAAGGCTCT AAA AGAGCCTTTATGAGA ATCAGAGAAATTACA TERM 441 422033 - 422019 - T 100 -10 -4.33739 | opp_overlap 422019, overlap 422011 TAAAAAATCTGAAAA GGCTCT AAA AGAGCC TTTATGAGAATCAGA TERM 442 422019 - 422033 + T 83 -10 -3.87815 | opp_overlap 422019 422011 TAAAAAATCTGAAAA GGCTCT AAA AGAGCC TTTATGAGAATCAGA sucB_1 423147 - 422053 - | dihydrolipoamide acetyltransferase TERM 443 422649 - 422631 - G 71 -3.1 -4.98531 | opp_overlap 422604 TTCGCAAATGAAAAA GAGGTGT CATAT AGACCTC ATTGAATGTCGTGAG kgd 425877 - 423151 - | alpha-ketoglutarate decarboxylase TERM 444 424010 - 423984 - G 100 -14.6 -3.04188 | overlap 423977 GAGGAGAATTATACA TTTCTACAGAGC CCT GCTCTGCAGAAA GATGGTACAATGGAG TERM 445 424100 - 424114 + g 76 -10 -3.37236 | CGAATAGAATCTTGA CCTGAG AGT CTCAGG TTGTACCCTTCGATT TERM 446 425435 - 425419 - G 82 -8 -4.4572 | AAGATTCCAAACAAA CTCCTG CAACT CAGGAG TACATGTTAGGGTTT TERM 447 425785 - 425771 - G 76 -2.8 -5.41143 | overlap 425773 TACCCTTCAAAAAAA TACTTC CAA GAAGGA TCCAAAGTCTCGTGA CPj0379 426031 - 426477 + | hypothetical protein TERM 448 426640 - 426652 + G 74 -4.1 -5.00616 | CCAAGAGACGCATTT CATAG AGA CTGTG TTTTTTGGAGGGGGA TERM 449 427540 - 427568 + G 71 -8.9 -3.37028 | opp_overlap 427530 AAATAGACAGGGCCG TCTCTTCCACGAT ACA ATAGCGGAAGAGA TTATGGGATATTCCT hemN_1 426467 - 427588 + | coproporphyrinogen III oxidase CPj0381 429518 - 427743 - | hypothetical protein yabC_1 430458 - 429742 - | SAM-dependent methytransferase TERM 450 430262 - 430247 - G 71 -3.2 -4.96848 | overlap 430232 430248 GGCTCTAGATAAAAA TCCCAA GCCT TAGGGA GGCGCGCATGTTTAC CPj0383 431402 - 430455 - | hypothetical protein TERM 451 431536 - 431506 - R 93 -6.9 -5.61881 | gap 1, opp_overlap 431511 431512 CCTTAAAAAGAAAAA CGGGAA-GGAAACC CAAT GTTTCCCTTTCCCG TTAACATGAGCAATA hctB 432086 - 431568 - | histone-like protein 2 TERM 452 432198 - 432164 - R 100 -11.1 -6.09888 | opp_overlap 432164 CTTTAATAAAAAAAA TGACTTTTATTTTAA AAAAA CTAAAATAAAAGTCA TTACTAAAACATAAA TERM 453 432164 - 432198 + r 83 -10.4 -3.14931 | opp_overlap 432164 CTTTAATAAAAAAAA TGACTTTTATTTTA AAAAAAC TAAAATAAAAGTCA TTACTAAAACATAAA pepA 433727 - 432228 - | leucyl aminopeptidase TERM 454 433015 - 433002 - G 71 -6.7 -4.10612 | ACGGACAACGATAAA GTGTG GATC CACAC AAGAACCCTTGGAAA TERM 455 433615 - 433635 + g 73 -2.6 -5.12617 | gap 1, opp_overlap 433615 433630, overlap 433615 433616 433618 433632 TACGAGGGTTCAAAC T-CGGCTTC AAAA GAAGCTGCA TTTTTTGCATCCTTA ssb 434234 - 433752 - | single-strand DNA-binding protein CPj0387 434905 - 434405 - | hypothetical protein TERM 456 435302 - 435292 - g 70 -5.4 -4.57569 | TCATGGGCCTAAAAA GCAT GGA ATGC AATACTCTTTTAAAG TERM 457 436983 - 436957 - g 74 -8 -4.07568 | GTTTGTCCCTCAAAA TGTAGCAACGCC GAC AGTGTCGCTACA GCCCCATACCACGCT glgX 435038 - 437032 + | glycogen hydrolase CPj0389 437843 - 437025 - | hypothetical protein ruvB 438853 - 437840 - | Holliday junction DNA helicase B CPj0391 439401 - 439216 - | hypothetical protein TERM 458 439370 - 439384 + g 74 -4.2 -5.05116 | CGTGATAAAATTGTA GCCTTT GGG ATAGGC TTTTCTTGTTTATAC dcd 439523 - 440095 + | deoxycytidine triphosphate deaminase CPj0393 440088 - 440435 + | hypothetical protein TERM 459 441579 - 441565 - g 77 -8.6 -3.93262 | GGTTAATAGAGCAAA TCGGAA CGA TTCCGA CAACAGGAATGAAAC tlyC_1 440445 - 441680 + | CBS domain-containing protein CPj0395 441673 - 442887 + | hypothetical protein yhfO 444062 - 442947 - | NifS-related aminotransferase TERM 460 443052 - 443037 - G 73 -2.5 -5.08255 | opp_overlap 443042 443044 ATGGCTAAAAGAAAA CCTGA GTGTTG CCAGG GTCAACTCTTCATCA TERM 461 443980 - 443995 + g 78 -5.4 -5.01732 | opp_overlap 443994 GGATTCGCGTACGTC CCTTCT ATAA GGAAGG TTTTTTGGAGAAATT CPj0397 444824 - 444087 - | PP2C phosphatase family protein TERM 462 444187 - 444223 + g 71 -8.2 -3.55378 | overlap 444186 TCTAGGGTGGCGGGC TGGTTCAAGATATC ACGAATATC GATATCTGGAACCA TGTTTGTCAATCCAT TERM 463 444279 - 444259 - G 77 -8.4 -3.98661 | CAGAGGCAGTACAAA TCTTCCTT TTCAC AAGGAAGA TTCCGAATGTCAGGC TERM 464 445128 - 445158 + H 93 -12.8 -3.35867 | opp_overlap 445126 AAGGGTTCAACTACG CACCATGAGTTT TAATCAC AAACTCATGGTG TTCCTTAGAAGTTCA CPj0398 445242 - 445412 + | hypothetical protein TERM 465 445767 - 445791 + G 70 -7.9 -3.72893 | AAAGAGTCTTGAACC TTTACCTTGGA ACC TCCAAGGAGAA TTTACTGAAGAGATC CPj0399 445588 - 446235 + | hypothetical protein TERM 466 446341 - 446371 + G 76 -6.8 -4.4634 | opp_overlap 446343, overlap 446339 446343 GGGAAAACACCTTTA AAGCTCCGCCAAGT TTT ATTTGGTGGTGCTC TTCTTGTTTTTTCTT TERM 467 446343 - 446369 + G 81 -9.4 -3.78069 | opp_overlap 446343, overlap 446341 446339 GAAAACACCTTTAAA GCTCCGCCAAGT TTT ATTTGGTGGTGC TCTTCTTGTTTTTTC CPj0400 446245 - 447018 + | hypothetical protein CPj0401 447593 - 447201 - | hypothetical protein mutY 448703 - 447594 - | adenine glycosylase yceC 448724 - 449422 + | pseudouridine synthetase family protein CPj0404 450596 - 449577 - | hypothetical protein CPj0405 451448 - 450672 - | hypothetical protein fabI 451678 - 452577 + | enoyl-(acyl carrier protein) reductase CPj0407 453451 - 452564 - | HAD family phosphatase/phosphatase TERM 468 452644 - 452601 - G 74 -10.4 -2.6472 | gap 1, opp_overlap 452617, overlap 452591 452617 TAATAGCGGACACCA GCTTCCCAAGCTGA-AAGAAT GCC ATTCTTATCTGCTGGGGGAGC TAGAAAGTCCGCATG TERM 469 453159 - 453148 - G 77 -3.6 -5.09225 | overlap 453126 ATTCCACGGAAAAAA GAGC CGTT GCCC CCTCCATACAATCTT TERM 470 453524 - 453539 + H 89 -9 -4.60797 | ATTCTTTGCATCCAC CGACAG ACTG CTGTCG TTTTGTCTATGAAAG CPj0408 453814 - 454293 + | hypothetical protein CPj0409 454354 - 454839 + | hypothetical protein dnaQ_1 454832 - 455545 + | DNA polymerase III subunit epsilon CPj0411 455542 - 456321 + | hypothetical protein CPj0412 456299 - 456958 + | hypothetical protein msbA 458912 - 456933 - | transport ATP binding protein TERM 471 457069 - 457081 + gT 71 -3.3 -5.08011 | overlap 457070 AAGAGTTCTTCTTTT GTGCC TTC GGCAA TTTTTTGACCATTTT TERM 472 457421 - 457437 + gT 89 -10.9 -3.68073 | CCTCCTCCTCCATAT CCTTACC ACA GGTAAGG TTATTCCATACAGTA TERM 473 458825 - 458807 - GT 91 -4.6 -5.63517 | overlap 458809 TCCCTAAAGAAAAAA TCTCCATC TGA GATGAAAA GGTAAGTCCTAAAAT accA 459852 - 458878 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 474 459755 - 459789 + gr 73 -7.4 -3.76393 | overlap 459763 AATTTCTGAATCTCT GAAGAAGATAAGAGAG AAT TTTTCTTATTTTTTTC TTTAAATTCGGCTAT TERM 475 459763 - 459781 + gr 95 -3.2 -5.96894 | overlap 459755 AATCTCTGAAGAAGA TAAGAGAG AAT TTTTCTTA TTTTTTTCTTTAAAT CPj0415 461207 - 459927 - | hypothetical protein TERM 476 460065 - 460041 - G 83 -8.7 -4.13767 | opp_overlap 460041 460041 GTCTGCATTCCAAAA TTTTTCTTTGC CTT GCAAAGCAAAA ATTTCCATATAGGGA TERM 477 460252 - 460224 - G 77 -4.6 -4.95843 | gap 2, overlap 460225 460251 ACAGAAAATAGAAAA CGTCATGGCAGAGG TGG CCTCAGCCA--ACG CAGCGTGCACGCGAT TERM 478 461235 - 461198 - G 100 -12.2 -5.3798 | gap 1 TAATAATAACAAAAA TTAGAGTCAAGCCCGGT AAAAA ACCGGTCT-GACTCTAA CAACTGAGACAAAGA himD 461565 - 461263 - | integration host factor alpha amiA 462744 - 461950 - | N-acetylmuramoyl alanine amidase murE 464110 - 462659 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 479 462820 - 462836 + gr 77 -3.7 -5.08824 | overlap 462823 TTGCTTGTTTTCTGT CGATTTC GAT GAAATAG TTTTTTGAATAAAAC TERM 480 464166 - 464154 - R 77 -6.2 -4.82901 | opp_overlap 464153 CTTTTTTCATAAAAA GCCC TCTAG GGGC ATGCTCTCACTCTGA TERM 481 464519 - 464537 + r 83 -9.6 -3.73224 | opp_overlap 464518 464512 ATAAAGAGGAGAACG GGCTCTCT GAT AGAGAGTC TTTGCTCAACGGTAA pbp3 466544 - 464583 - | transglycolase/transpeptidase CPj0420 466818 - 466531 - | hypothetical protein mraW 467708 - 466815 - | S-adenosyl-methyltransferase MraW CPj0422 467952 - 468497 + | hypothetical protein TERM 482 468790 - 468775 - g 71 -4 -4.87803 | CACTCTTAAATAAAA CAAAAG CTCT CTTCTG TTTGGGACGAATTGA CPj0423 468501 - 468929 + | hypothetical protein TERM 483 469234 - 469212 - f 74 -9.2 -3.09671 | ATCTGAACGCGAAGA GTCATTGCAC TCA GTGCAATGAA TAGTCAAGATGCAAT TERM 484 470405 - 470394 - g 95 -3 -5.92399 | opp_overlap 470397, overlap 470387 CAACAAAACAAAAAA TTTC TGTA GAAA CGATCTTAAAAAGTG dnaA 469322 - 470674 + | chromosomal replication initiation protein CPj0425 470690 - 471277 + | hypothetical protein CPj0426 471821 - 471243 - | hypothetical protein TERM 485 471359 - 471374 + g 82 -4.7 -5.26155 | overlap 471368 ACAAAAAGCAGATAC CTTCC CCTTTA GGAAG TTTTTCTATTTGTCT TERM 486 471559 - 471549 - G 82 -2.4 -5.61596 | overlap 471551 ACTCTTAGAAAAAAA CTGC AGA GCGG GTCGCTTACCTTCAC TERM 487 471722 - 471734 + g 74 -6.3 -4.57341 | AACGCCCTTCTCTAT CTTCT ACG AGAAG TTTTTCCAAGCAGTT TERM 488 473068 - 473105 + G 73 -9.1 -3.53019 | opp_overlap 473067 473087, overlap 473085 CTCTTGGAGAACCAT GGCAGCCTTTGGGATAG GAGC CTTTCTCACAGGCTGGC TCTTTAAGTTTATCA nqr2 471917 - 473428 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 489 473705 - 473690 - g 74 -6.2 -4.45201 | overlap 473693 473694 TTCGATAAAAAAACA CAACTT CTTG AAGTTG CTACAAAAAAAGTCT nqr3 473432 - 474394 + | Na(+)-translocating NADH-quinone reductase subunit C nqr4 474391 - 475032 + | Na(+)-translocating NADH-quinone reductase subunit D nqr5 475036 - 475806 + | Na(+)-translocating NADH-quinone reductase subunit E CPj0431 476193 - 475858 - | hypothetical protein TERM 490 476111 - 476096 - G 79 -7.6 -4.25053 | CGATAAGATAAAGAA TTCTCC GAAT GGAGAA GGACACTAGAATACC CPj0432 476526 - 476221 - | hypothetical protein gcsH 476983 - 476636 - | glycine cleavage system protein H CPj0434 479172 - 476983 - | hypothetical protein TERM 491 478565 - 478555 - G 76 -6.8 -4.56597 | overlap 478557 TCTCTCTTCTAAAAA GAGC TTG GCTC TAGCAAGAAATCCTT TERM 492 478929 - 478886 - G 72 -7.6 -3.78022 | gap 1, overlap 478900 TTCATAGCCATGAAA TCTTTCTCTACATACCGCTTC CCT GAAGCGGTA-GTAAAAACAGT CCGACGTGAGGTGGA TERM 493 478916 - 478900 - G 89 -12.3 -2.87211 | overlap 478886 ATCTTTCTCTACATA CCGCTTC CCT GAAGCGG TAGTAAAAACAGTCC TERM 494 479161 - 479119 - G 86 -3.4 -5.74122 | gap 1, opp_overlap 479124, overlap 479120 479122 479123 TAGCAGAGAAAAAAA CCAGGCAGGATCCCTGCAG AGCCTG CAGAAGAGATCCTGT-TGG TAGATTCGCACCCAG CPj0435 480612 - 479182 - | phospholipase D superfamily protein lplA_1 481328 - 480609 - | lipoate protein ligase-like protein TERM 495 482091 - 482074 - g 78 -5.6 -4.82678 | opp_overlap 482069 482080, overlap 482069 TGACAAAAACGAAAA GCTTTC TGCTCT GAAAGC ATATGGTTATGATTT TERM 496 482283 - 482271 - g 77 -4.9 -5.00616 | GTCTGGCTCAAAAAA TCATT CTG AATGA GGTTCCTGATGCCTT TERM 497 482961 - 482942 - g 84 -3.6 -5.49569 | gap 1 GATGAAGAGAAAAAA CTTCGC-GA ACG TCTGCAAAG TATGAAACAGGAATG TERM 498 483978 - 483962 - g 75 -8.7 -3.61398 | TCCTGCCGTCAAGAA GCTCGCA AGC TACGAGC AACCTTGGTTGAAAA clpC 481526 - 484063 + | ClpC protease trmU 485126 - 484041 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CPj0439 485263 - 485790 + | hypothetical protein CPj0440 485815 - 486453 + | hypothetical protein CPj0441 486601 - 487551 + | hypothetical protein CPj0442 487723 - 488241 + | hypothetical protein TERM 499 488276 - 488258 - f 74 -3.2 -5.27938 | AGTTCCAAATAAAAA TAACTTAA AGT TTTAGTTA AAAATCTGTTAAGAT TERM 500 488300 - 488281 - f 70 -4.4 -4.66163 | overlap 488283 488291 AGTTTTAGTTAAAAA TCTGTTAA GATT TTAACAAA TAAACTTTATTTAAT TERM 501 488613 - 488590 - g 71 -6.8 -4.2243 | gap 1, opp_overlap 488590, overlap 488610 ATAAATATCCTAAAA TGCGCTATGTC TAT GACACAG-GCA TTATTGCCCTTGCGG CPj0443 488439 - 489692 + | hypothetical protein TERM 502 489937 - 489965 + F 77 -6 -4.72272 | opp_overlap 489948, overlap 489939 TCTATTGGTGCACCA TGCTCCTAAAGC CACAT GCTATGGGAGTA TTTTTGATAAAAAGC TERM 503 490597 - 490587 - g 75 -2.4 -5.32882 | opp_overlap 490587 490589, overlap 490589 TACTAGCACAAAAAA TGGC GGG GCCC TCTGTAGTACAGCAA TERM 504 493564 - 493585 + G 80 -8.7 -3.91028 | opp_overlap 493561 493564 TTCAAACACGAATCA GCAAAGCCC CCCA GTGCTTTGC TTCTTACTTTAGGTT pmp_6 489997 - 493827 + | polymorphic outer membrane protein G/I family protein TERM 505 493815 - 493856 + F 77 -5.5 -4.84359 | gap 1, opp_overlap 493830, overlap 493816 AAACTGTGGAACTCG TTAT-TCTTTCTAAGATTCT CCG AGAATCTTAGAAAAACATAC TTTTTATAAAGATGA TERM 506 493816 - 493855 + F 75 -9 -3.50133 | gap 1, opp_overlap 493830, overlap 493815 AACTGTGGAACTCGT TAT-TCTTTCTAAGATTCT CCG AGAATCTTAGAAAAACATA CTTTTTATAAAGATG TERM 507 495386 - 495376 - g 71 -3.2 -4.96848 | overlap 495357 495381 TCCCCTACAGAAAAA GCAA TCG CTGC AAACGTCACCTCTAC pmp_7 494089 - 496899 + | polymorphic outer membrane protein G family protein TERM 508 497759 - 497745 - g 84 -6.4 -5.03314 | opp_overlap 497747, overlap 497747 TTTATTGTGAAAAAA CAGGAG AGA CTCCTA CTCTTACTATCTCTG TERM 509 497757 - 497747 - g 71 -6.8 -4.14633 | opp_overlap 497747, overlap 497745 TATTGTGAAAAAACA GGAG AGA CTCC TACTCTTACTATCTC pmp_8 496943 - 499735 + | polymorphic outer membrane protein G family protein TERM 510 499744 - 499769 + F 100 -14.9 -3.78934 | ATTCTAGTTCCTACT TTCCTCCCTAA ACTT TTAGGGAGGAA TTCTTATAAAAACCC TERM 511 500396 - 500382 - g 78 -10 -3.50853 | opp_overlap 500387 CTTTTCTAATGACAA TGGAGG CGC CCTCCA AGGCAGCTCTATCAG TERM 512 501697 - 501677 - g 80 -6.1 -4.84359 | TTACCTGGACAAAAA CAGGATACA ATC CGAATCCTG AGCGTCGTGGAACCT pmp_9 499885 - 502671 + | polymorphic outer membrane protein G/I family protein TERM 513 502888 - 502850 - T 100 -10.3 -4.3767 | gap 1, opp_overlap 502853 502886, overlap 502853 502854 CTAGATCACAAGAAA GAATGGGCAGAGTACGTG ATCT CACGAACTCCGCCCGT-C TTAGAATCCAAAGAC TERM 514 502853 - 502886 + T 88 -13.1 -3.05844 | opp_overlap 502850 502853 502854 GATCACAAGAAAGAA TGGGCAGAGTACGTG ATCT CACGAACTCCGCCCG TCTTAGAATCCAAAG TERM 515 502886 - 502853 - T 100 -13.1 -4.29119 | opp_overlap 502853, overlap 502850 502854 GATCACAAGAAAGAA TGGGCAGAGTACGTG ATCT CACGAACTCCGCCCG TCTTAGAATCCAAAG TERM 516 502885 - 502854 - T 100 -16.6 -3.16387 | opp_overlap 502853, overlap 502853 502850 ATCACAAGAAAGAAT GGGCAGAGTACGTG ATCT CACGAACTCCGCCC GTCTTAGAATCCAAA TERM 517 502886 - 502903 + T 70 -4.1 -4.82667 | opp_overlap 502850 TCACGAACTCCGCCC GTCTTAG AATC CAAAGAC TTTTTAGTATACTAA yxjG_2 504127 - 503012 - | hypothetical protein TERM 518 503120 - 503108 - G 71 -6.9 -4.11664 | CTCACAAGAAGCAAA CCCAC ATT GCGGG CTCAAAGAAAGTCTC TERM 519 504327 - 504313 - R 100 -10 -5.04249 | overlap 504293 504290 CCCTTAAAAAAGAAA GAGACG TAC CGTCTC TGCAACTCTAATCTT TERM 520 504494 - 504540 + r 83 -7.3 -4.7254 | gap 1, opp_overlap 504485 504503, overlap 504495 504496 504500 504502 504503 TTAAAACGTGTTTGT AACAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTGCC TTTTTAATCCCCGAT TERM 521 504495 - 504539 + r 87 -10.8 -3.43042 | gap 1, opp_overlap 504485 504503, overlap 504494 504496 504500 504502 504503 TAAAACGTGTTTGTA ACAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTGC CTTTTTAATCCCCGA TERM 522 504496 - 504538 + r 93 -14.3 -2.65504 | gap 1, opp_overlap 504485 504503, overlap 504495 504494 504500 504502 504503 AAAACGTGTTTGTAA CAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTG CCTTTTTAATCCCCG TERM 523 504500 - 504535 + r 85 -10.4 -3.47218 | opp_overlap 504503, overlap 504496 504495 504494 504502 504503 CGTGTTTGTAACAAG AAAGGCAGAGTACGTG ACCT CACGAACTCTGCCCTC TTGCCTTTTTAATCC TERM 524 504502 - 504533 + r 91 -13 -3.29762 | opp_overlap 504503, overlap 504500 504496 504495 504494 504503 TGTTTGTAACAAGAA AGGCAGAGTACGTG ACCT CACGAACTCTGCCC TCTTGCCTTTTTAAT TERM 525 504532 - 504503 - R 100 -16.5 -4.44667 | opp_overlap 504503 504502 504500 504496 504495 504494 GTTTGTAACAAGAAA GGCAGAGTACGTG ACCT CACGAACTCTGCC CTCTTGCCTTTTTAA TERM 526 504503 - 504532 + r 100 -16.5 -2.56773 | opp_overlap 504503, overlap 504502 504500 504496 504495 504494 GTTTGTAACAAGAAA GGCAGAGTACGTG ACCT CACGAACTCTGCC CTCTTGCCTTTTTAA pmp_10 507430 - 504644 - | polymorphic outer membrane protein G family protein TERM 527 506917 - 506927 + g 74 -6.8 -4.26076 | opp_overlap 506917 GATTCTTGGTAGAAA TGGC TCC GCCA TTTTCCTCACAGTAA TERM 528 507123 - 507106 - G 71 -7 -4.19624 | overlap 507102 CAGTTGTAACAGAAA GTGCTG CGCCTT CAGCAC TAGACTTAATATTTA TERM 529 509797 - 509786 - g 74 -4.4 -4.99035 | TCAGCTATAGAAAAA TTCC CTAG GGAA ATTCCCCTAGCCTTG pmp_11 507593 - 510379 + | polymorphic outer membrane protein G family protein TERM 530 510390 - 510410 + F 100 -11.2 -4.53607 | opp_overlap 510390 TCTAGATTGCTAAAA CTCCCTAG TTCTT CTAGGGAG TTTTCTCATACTTTT TERM 531 510410 - 510390 - f 100 -11.2 -4.13014 | opp_overlap 510390 TCTAGATTGCTAAAA CTCCCTAG TTCTT CTAGGGAG TTTTCTCATACTTTT pmp_12 510637 - 512181 + | polymorphic outer membrane protein (truncated) A/I family protein TERM 532 512230 - 512259 + F 89 -13.7 -2.87683 | opp_overlap 512226 CTTTAAGAAGATTTT GGGACCTATCTGT ATTC AGAGATAGGTCCC TCTATGCACACATGT TERM 533 512287 - 512297 + F 72 -8.2 -3.36216 | overlap 512286 TGTTCACGAGTCTCG GGCG TAG CGCC ATTTTCTACTTTACA TERM 534 515137 - 515127 - g 77 -8.2 -3.95554 | opp_overlap 515125, overlap 515125 GCATCCAAGAAAATA CCCC TGA GGGG AGGATTTTTGGACAC pmp_13 512552 - 515473 + | polymorphic outer membrane protein G family protein TERM 535 515495 - 515506 + F 72 -5.8 -4.4572 | TTTAACGACAGGGTT GAGG CATG CCTC TTTCTTTCAAATCTT pmp_14 515500 - 518436 + | polymorphic outer membrane protein H family protein TERM 536 518457 - 518439 - T 100 -11.8 -4.1721 | opp_overlap 518439 ATCCACATTTTAAAA CTCTAAGC TCT GCTTAGAG TTTTCTGTAGCCCCG TERM 537 518439 - 518457 + T 100 -11.8 -4.52589 | opp_overlap 518439 ATCCACATTTTAAAA CTCTAAGC TCT GCTTAGAG TTTTCTGTAGCCCCG CPj0456 520851 - 518773 - | hypothetical protein TERM 538 520596 - 520612 + g 77 -6.5 -4.62168 | opp_overlap 520595 520596 520598 CGATTCTAGAAATAT GATCTCG GCC CGCGATC TTTTCTACTTTCAGT TERM 539 520969 - 520955 - R 71 -3.5 -5.11836 | overlap 520956 ACACTGAAAATAAAA CGCTC TTGTT GAGCA CGTTTTCCTAACAAA CPj0457 523184 - 521295 - | hypothetical protein TERM 540 523267 - 523241 - R 76 -4.4 -5.16472 | opp_overlap 523244, overlap 523245 AAAAACTTGAAAAAA GCAATCTCTAAG ATA CTTAGCGACTCC TATAGCCACAAGAAA CPj0458 525639 - 523552 - | hypothetical protein CPj0459 526324 - 525935 - | hypothetical protein CPj0460 527159 - 526308 - | hypothetical protein CPj0461 527957 - 527160 - | hypothetical protein TERM 541 528241 - 528231 - R 84 -5.4 -5.4833 | overlap 528237 TGACCTAAGAAAAAA GAAG AAT CTTC AAAAAAGAGCTCTGC TERM 542 528301 - 528287 - R 93 -8.6 -4.72007 | opp_overlap 528287 528289 GTTCATCAAAACAAA CACCTT AGA AAGGTG TGTCTAATTAGTTCC TERM 543 528287 - 528301 + r 71 -8.6 -3.03554 | opp_overlap 528287, overlap 528289 GTTCATCAAAACAAA CACCTT AGA AAGGTG TGTCTAATTAGTTCC CPj0462 530371 - 528353 - | hypothetical protein CPj0463 531676 - 530507 - | hypothetical protein TERM 544 530850 - 530862 + g 82 -7.7 -4.56597 | opp_overlap 530849 530850 CAGAATGCTAAGAAT CCTTC CCA GAAGG TTTTTGAAGGGAGCG CPj0464 532161 - 531682 - | hypothetical protein TERM 545 531765 - 531777 + g 75 -3.3 -5.14563 | overlap 531766 CAGTTTGGAGTTCCC AGGAG CTG CTCCG TTTTTTCGTAGGGAG CPj0465 532531 - 532187 - | hypothetical protein TERM 546 532239 - 532254 + g 86 -9 -4.27886 | opp_overlap 532250, overlap 532250 TTCCCCTCGTCTCTA GGCTCT AATG AGAGCC TTTGTCTCTTTAGAA TERM 547 532292 - 532306 + g 70 -10 -2.56271 | overlap 532291 532288 AACTCGACTTCTATG GTCGTG ACC CACGAC GTGTTCTACTCGCAC TERM 548 532541 - 532527 - G 72 -7.2 -4.00684 | opp_overlap 532527 532525 AGAGAAAAGTAATAA CTCATT AAA AATGAG TCTTTTAAAAAATAC TERM 549 532627 - 532614 - H 70 -3.9 -4.86773 | CAAAATCAGCAAAAA TCTAT AGGA ATAGA GATAAGTGGCTCTTA TERM 550 532811 - 532799 - H 73 -4.1 -4.93365 | opp_overlap 532801, overlap 532800 532801 CCTGAGAACCAAAAA CTGCT CTA AGCAA AGTATGCAAAGAGCT TERM 551 533100 - 533123 + G 79 -11.1 -3.13788 | opp_overlap 533100, overlap 533098 533096 GTATTGGCTAATGAA GGTCTCCAA CTTCCT TTGGAGACC TATATTACATTAAGT TERM 552 533123 - 533100 - g 81 -11.1 -3.34344 | opp_overlap 533100 533098 533096 GTATTGGCTAATGAA GGTCTCCAA CTTCCT TTGGAGACC TATATTACATTAAGT pmp_15 533043 - 535859 + | polymorphic outer membrane protein E family protein TERM 553 536692 - 536680 - g 71 -4.7 -4.72201 | opp_overlap 536680 TGCGATAAAAAATAA CTCCG GGT CGGTG ATTTTCAATAACAAC TERM 554 536999 - 536986 - g 71 -6.7 -4.19746 | CGCATTTCAAAATAA TGAGG TTTT CCTCA CCACATTTGGTAGAT pmp_16 535952 - 538756 + | polymorphic outer membrane protein E family protein TERM 555 538829 - 538797 - f 70 -7.2 -3.8591 | CTTTAGAATTAACAA CTATCCGA-TGAGCTA CGT TAGCCCAATCGG-TAG AGGACTCCCTCAAAA pmp_17.1 538951 - 539754 + | polymorphic outer membrane protein E family protein TERM 556 540751 - 540740 - g 93 -4.4 -5.78622 | TGACTGCAAAAAAAA TCGA TACT TCGA ATCTCATTGTAGAAG pmp_17.2 539739 - 540782 + | polymorphic outer membrane protein pmp_17.3 540676 - 541854 + | polymorphic outer membrane protein TERM 557 542490 - 542503 + G 77 -3.7 -5.19212 | opp_overlap 542482 542490 ACATTAAGGACAACA CTGGC CCTT GCCTG TTTTTTAATAATGCT pmp_18 541883 - 544723 + | polymorphic outer membrane protein E/F family protein TERM 558 544785 - 544763 - T 73 -7.1 -4.00532 | overlap 544769 CCTGTAAAGACCAAA TAGAGAGTA GTGAA CACTCTCTA CCATCATGAATCTTA CPj0472 547224 - 544897 - | hypothetical protein TERM 559 547321 - 547350 + r 81 -9.5 -3.75629 | opp_overlap 547314 547320 547318 547322, overlap 547322 TAAAATAATCAACAT ATTGAAGAGTTTT AATT AAAACTCTTCAAG TTTCCCTTGCGCATA TERM 560 547349 - 547322 - R 91 -13 -3.25762 | opp_overlap 547321 547322, overlap 547314 547320 547318 AAAATAATCAACATA TTGAAGAGTTTT AATT AAAACTCTTCAA GTTTCCCTTGCGCAT TERM 561 547322 - 547349 + r 87 -13 -2.85056 | opp_overlap 547314 547322 547320 547318, overlap 547321 AAAATAATCAACATA TTGAAGAGTTTT AATT AAAACTCTTCAA GTTTCCCTTGCGCAT CPj0473 548912 - 547386 - | hypothetical protein TERM 562 548231 - 548188 - G 85 -6 -5.24531 | opp_overlap 548188 548193 548194, overlap 548194 548196 ACTCCTGATAAAAAA GAAGAACTCTTCGAAGAAGC CTCT GCTTCTTCGGAACGCCTTTC TTTTACAGTATCGCC TERM 563 548225 - 548194 - G 82 -8 -4.44307 | opp_overlap 548193 548188 548194, overlap 548188 548196 GATAAAAAAGAAGAA CTCTTCGAAGAAGC CTCT GCTTCTTCGGAACG CCTTTCTTTTACAGT TERM 564 548614 - 548633 + g 73 -8.6 -3.5936 | overlap 548597 548606 548605 TCAGGACGCGCTTGA GGGGTTTT TTTA AAGACCCC TTTAACGCCTTTCCA TERM 565 548993 - 548976 - R 83 -2.1 -5.79595 | overlap 548969 548963 TGTTAAAATAAAAAA TATTTTA AAAA CAAAATA TAAATTAAAATAAAC CPj0474 550892 - 549123 - | hypothetical protein TERM 566 549527 - 549548 + g 76 -2.9 -5.26918 | overlap 549532 CCTCTTCACGAATTG CAGCGTCAG TCTT CTGAATCTG TTTTTTGTAGACTGT TERM 567 550082 - 550102 + g 71 -8.3 -3.53444 | AGGCTCTCCACTTTC CGATACTAC TAT GGAGTATCG TTTGCAAAACCGTCG glgB 553163 - 551001 - | glycogen branching enzyme TERM 568 552730 - 552715 - G 75 -5.4 -4.77757 | TGCCAAAAATTAAAA TCTCCG ACTA CAGAGA CTCTCTGCGCATGGG TERM 569 553073 - 553057 - G 71 -9.5 -2.9294 | overlap 553054 AAAATAACAATATGA TCTGAAG AAT CTTCAGA AGCAAGGATCCCTAA CPj0476 554163 - 553174 - | hypothetical protein TERM 570 553869 - 553881 + g 78 -9.1 -3.87149 | GGGGCCCTGCTTGCG CTGCC GAA GGCAG TTTCCCTTTGATAGA yqeV 555425 - 554160 - | hypothetical protein TERM 571 554633 - 554623 - G 81 -5.4 -5.20154 | opp_overlap 554626, overlap 554594 ACACAATCTAAAAAA TCTC CGC GAGA ATACTTCCGGTTCAT hflX 556944 - 555526 - | GTP binding protein TERM 572 556330 - 556310 - G 72 -9.7 -2.78384 | opp_overlap 556296 556310 CGCTGTTTGATCACA GCTTTCAGC TGT GCTGACAGC TTATGGATACGCTCA TERM 573 556310 - 556330 + g 76 -9.7 -3.36327 | opp_overlap 556310, overlap 556296 CGCTGTTTGATCACA GCTTTCAGC TGT GCTGACAGC TTATGGATACGCTCA phnP 557744 - 556932 - | metal dependent hydrolase TERM 574 557697 - 557664 - G 88 -9.5 -4.33274 | opp_overlap 557675, overlap 557665 TCTACATGAGCAAAA CGGCACGGGAATTCC TTCG GGATTTCCTGTGCCT AAAAATACTAATTTC TERM 575 557696 - 557665 - G 95 -13 -3.19482 | opp_overlap 557675, overlap 557664 CTACATGAGCAAAAC GGCACGGGAATTCC TTCG GGATTTCCTGTGCC TAAAAATACTAATTT CPj0480 558622 - 557966 - | hypothetical protein CPj0481 560265 - 558655 - | hypothetical protein artJ 561056 - 560277 - | arginine periplasmic binding protein TERM 576 560780 - 560792 + g 100 -7.7 -5.58209 | TTCCTGCTAAAATTG CATCG ATA CGATG TTTTTTTAAATTTAA TERM 577 562664 - 562654 - g 73 -5.4 -4.614 | opp_overlap 562659 562662, overlap 562659 TGCAACTATAGAAAA CAGA CGA TCTG GGGATCTCCCTTGGT TERM 578 562659 - 562688 + G 80 -6.4 -4.82091 | opp_overlap 562654 562659, overlap 562662 CTATAGAAAACAGAC GATCTGGGGATC TCCCTT GGTCTCCAGCTC TTTCTTTCTTTGCTT CPj0483 561155 - 564286 + | hypothetical protein aroG 564289 - 565146 + | 3-deoxy-7-phosphoheptulonate synthase TERM 579 565260 - 565274 + F 76 -4.4 -5.11063 | opp_overlap 565262, overlap 565257 AATTTTGTTTTATTA TATTTA ATA TAAATA TTTTTATTGAATAGT CPj0485 565357 - 565551 + | hypothetical protein TERM 580 565603 - 565564 - T 83 -5 -5.55001 | opp_overlap 565564, overlap 565568 565569 TAATAAAAAATAAAA CGAACCCCTCTTCTTCTT GGAA AAGAAGGAGAGGTATCAG ATTCTAAACACAACT TERM 581 565597 - 565568 - T 73 -7.3 -3.989 | gap 1, opp_overlap 565564, overlap 565564 565569 AAAAAATAAAACGAA CCCCT-CTTCTTCT TGG AAAAGAAGGAGAGG TATCAGATTCTAAAC CPj0486 567103 - 565721 - | hypothetical protein TERM 582 567057 - 567041 - G 82 -2.3 -5.65496 | overlap 567044 CAGGAAAAATAAAAA TAATGAA AAA TTCATAA AATAAAGAACTCCAC TERM 583 567054 - 567044 - G 71 -4 -4.855 | overlap 567041 GAAAAATAAAAATAA TGAA AAA TTCA TAAAATAAAGAACTC CPj0487 569059 - 567428 - | hypothetical protein TERM 584 567751 - 567737 - G 84 -2.8 -5.626 | opp_overlap 567737 CATTCCAGAAAAAAA GCTC CATCCCT GAGC TTGCTGTCCTGAAAG TERM 585 569049 - 569037 - G 73 -9.1 -3.48153 | ATCAACAATTGATAA CGGAG GGA CTCCG AGCCGAACAAGGATC ycfF 569415 - 569083 - | HIT family hydrolase CPj0489 570284 - 569412 - | hypothetical protein TERM 586 569862 - 569851 - G 75 -2.2 -5.25772 | AAAGCACAAGAAAAA TCCG CATC CGAA TTAGTTTCTTCTTCC TERM 587 571758 - 571785 + G 74 -9.2 -3.32993 | gap 1, overlap 571759 TTTATTTTCCCGCTA C-TTCCCTTCAGC ATC GCTGAAGGGCATG TTCCTCTCTAACTAC TERM 588 571759 - 571783 + G 95 -12.9 -3.23045 | overlap 571758 TTATTTTCCCGCTAC TTCCCTTCAGC ATC GCTGAAGGGCA TGTTCCTCTCTAACT TERM 589 571839 - 571857 + G 78 -6 -4.85599 | CTATTTTCAGATTCC CTCTCC CACTTCT GGAGAG TTTTTCTCGAATCGA CPj0490 570598 - 572655 + | hypothetical protein CPj0491 573671 - 572652 - | hypothetical protein TERM 590 573413 - 573399 - G 75 -5.8 -4.64076 | AATCAAAGGAGAAAA CAAAAT GGT ATTTTG AGGTAACCATACCCC TERM 591 573895 - 573875 - H 77 -9.1 -3.16872 | opp_overlap 573875, overlap 573868 573874 AGCAAGAGTGAAAAG CTGTCTTCA TCG TAAAGACAG TGTATAGAGAAGAAA CPj0492 573971 - 574126 + | hypothetical protein CPj0493 574323 - 574171 - | hypothetical protein CPj0494 574683 - 574462 - | hypothetical protein aspC 574922 - 576115 + | L,L-diaminopimelate aminotransferase CPj0496 576112 - 577134 + | hypothetical protein CPj0497 577408 - 577136 - | hypothetical protein CPj0498 578354 - 577401 - | hypothetical protein TERM 592 577666 - 577652 - G 91 -8.6 -4.74539 | overlap 577657 AAGAACGGAATAAAA GTAAGG TGT CCTTAC GATTCGCAACCACAC CPj0499 579679 - 578522 - | hypothetical protein TERM 593 581299 - 581285 - g 70 -7.8 -3.61328 | overlap 581277 581286 ATGAACACGGGCAAA CCCAGC AGT GCTGGA TGGGGACCTACGGCA proS 579979 - 581685 + | prolyl-tRNA synthetase TERM 594 581903 - 581892 - g 75 -5.8 -4.66163 | AGTTGTACCTAAAAA CAGG GCAG CCTG TAGGGTCTAAAACTT TERM 595 582423 - 582390 - g 100 -13.3 -2.96274 | overlap 582385 582397 582416 TCCTGCAGAACTACA TCCGAAAGCTCCCCA CAAA TGAGGAACTTTCGAA AAAAGAAGAACACCT hrcA 581777 - 582973 + | heat-inducible transcription repressor TERM 596 583402 - 583388 - g 71 -8.6 -3.55801 | ACGAAGCGGTGCAAA CAGAAG AGA CTTCTG AAGTTCCTGAGGGGA grpE 582970 - 583524 + | HSP-70 cofactor TERM 597 584977 - 584962 - g 70 -7.6 -3.57462 | GAGGCCATCCTCAAA TCGAAG TCTC CTTCGA TATCGATGCAAACGG TERM 598 585053 - 585043 - g 75 -5.4 -4.84673 | GTAAAGAACAGAAAA TTCG TAT CGAA GCAAGCTCAGGACTT TERM 599 585274 - 585260 - g 70 -5.6 -4.29176 | overlap 585261 AGAGCGAATCGAAAA CGTGCG CAA CGCACT CAAAGATGACGCTCC dnaK 583554 - 585536 + | molecular chaperone DnaK TERM 600 585562 - 585591 + F 79 -9.3 -3.44146 | overlap 585563 585585 CAATTTAAGTTTCTC TATTCCCATCCTC ATAA GAGGATGGGAAAC TTCCTTATAAACAGA TERM 601 585563 - 585590 + F 86 -12.8 -2.66274 | overlap 585562 585585 AATTTAAGTTTCTCT ATTCCCATCCTC ATAA GAGGATGGGAAA CTTCCTTATAAACAG TERM 602 586755 - 586731 - g 70 -5.7 -4.3898 | opp_overlap 586731, overlap 586734 ATGACGTTTACAAAA TCAGGTCATCT TTC AGATTACCAGA TTTTCCGTAGCGTCA vacB 585807 - 587837 + | ribonuclease family protein TERM 603 588279 - 588267 - g 76 -7.7 -4.17048 | CTCTTTGGAAAACAA TAGGC AAC GCCTA AATACCCCAGCTCTC CPj0505 587839 - 588429 + | 3-methyladenine DNA glycosylase TERM 604 588535 - 588552 + G 70 -7.1 -3.78778 | TTATTCTCCTTCCTC TAGCAAT TACT ATTGCTA TTGTTACTATGATCA TERM 605 588573 - 588608 + G 74 -7.6 -3.92832 | opp_overlap 588572 588573 ACTATGATCATGAAC TTCCTAACCCAACCCT TCGT AGGCTTGGCTTCGGAA TTCTTTGAGAAATTT CPj0506 588492 - 589163 + | hypothetical protein CPj0507 589281 - 589445 + | hypothetical protein TERM 606 589607 - 589588 - g 78 -4.2 -5.13473 | AGTACAGCGAAAAAA GTCACAGG TTTA CCTAAGAC CCCTATTTTAAAATA CPj0508 589462 - 589623 + | hypothetical protein TERM 607 589703 - 589677 - g 79 -6.7 -4.59591 | opp_overlap 589677 AAGAAAAGATCAAAA TACATGTTTCC AATGA GCAAACATGTA TTCCTATTCATTTGG CPj0509 589655 - 590131 + | metalloenzyme TERM 608 590135 - 590111 - f 89 -3.5 -5.80364 | ATGTTAAGAAAAAAA CATGCTTTGCT AAC AGCTTAACATG CTCCATATTCTTTTA TERM 609 590280 - 590259 - g 86 -8.7 -4.32857 | TTCTTCAAAGATAAA GGAAGAGAG TATC CCCCCTTCC CCAGTGCTCCTACAA tlyC_2 590133 - 591296 + | CBS domain-containing protein rsbV_1 591461 - 591811 + | sigma regulatory factor TERM 610 593221 - 593231 + G 74 -6.8 -4.2461 | opp_overlap 593213 593220 GATTAAAGAAGAATC TCCG CTT CGGA TTTGTTGCTGGGGGT CPj0512 591873 - 593735 + | hypothetical protein TERM 611 594991 - 594962 - gf 71 -6.5 -4.10925 | opp_overlap 594962 ACATATGGGGGAAAA GGTTTTCCAGATG GCCT CATCTAAAGAACC TATTAAAATGGACGC CPj0513 593967 - 595076 + | hypothetical protein CPj0514 595049 - 595843 + | hypothetical protein ubiE 595791 - 596504 + | ubiquinone/menaquinone biosynthesis methyltransferase TERM 612 596523 - 596507 - T 84 -6.5 -5.06472 | opp_overlap 596506, overlap 596509 AGAGAAACAATAAAA CATGGAG GAT CTCCAAG CTTGGTCGCAAGGAG TERM 613 596521 - 596509 - T 78 -7.7 -4.12859 | opp_overlap 596506, overlap 596507 AGAAACAATAAAACA TGGAG GAT CTCCA AGCTTGGTCGCAAGG CPj0516 598134 - 596572 - | hypothetical protein CPj0517 598951 - 598112 - | hypothetical protein TERM 614 598457 - 598416 - G 74 -8 -3.922 | AAATCCCGAATCAAA CAGGCCCAATCCACCAAA GGCTCG TTCGGTGGCTCAGGGCTG AAATGCTCCATAAAT CPj0518 600123 - 599149 - | hypothetical protein dapF 600994 - 600221 - | diaminopimelate epimerase clpP_1 601538 - 600963 - | ATP-dependent Clp protease proteolytic subunit glyA 603117 - 601558 - | serine hydroxymethyltransferase TERM 615 602443 - 602426 - G 70 -5.5 -4.48987 | overlap 602429 TCTGCATAATCAAAA CACTCCG TATC CGGATTG ACATCATAGGGGAAG hemD 603307 - 603978 + | uroporphyrinogen-III synthase CPj0523 604043 - 604375 + | hypothetical protein CPj0524 604423 - 605502 + | hypothetical protein TERM 616 606296 - 606278 - g 74 -4.7 -4.89063 | TCATTGAAAAAGAAA TTTTTGA AAGCA TCAAAAA GATTAATGAAGAAGG CPj0525 605842 - 606606 + | hypothetical protein kpsF 608016 - 607027 - | GutQ/KpsF family sugar-P isomerase sucB_2 609224 - 608043 - | branched-chain alpha-keto acid dehydrogenase subunit E2 gltT 610482 - 609238 - | glutamate symport TERM 617 609987 - 609974 - G 70 -3.7 -4.76123 | AAACCATCAATAAAA CGCTC GACA GGGCG GCCACGTTCTCCAGA lpxK 611579 - 610482 - | tetraacyldisaccharide 4'-kinase TERM 618 611145 - 611118 - G 77 -8.4 -3.98762 | opp_overlap 611142, overlap 611119 AAGGAGAATACCAAA TTTCTCTGCAGC GCGT GCTGCAGAGATC CTCCGGTCCTTATGC TERM 619 611144 - 611119 - G 86 -11.9 -2.98173 | opp_overlap 611142, overlap 611118 AGGAGAATACCAAAT TTCTCTGCAGC GCGT GCTGCAGAGAT CCTCCGGTCCTTATG TERM 620 611732 - 611720 - R 70 -2 -5.27477 | AGCTTAATTAAAAAA TTGT GTTAA ACAA AAAACTAATATAATT spoU_1 612574 - 611777 - | rRNA methylase TERM 621 612069 - 612029 - G 100 -13.5 -3.61398 | gap 1, overlap 612030 TTCCTGCTTGAACAA CTCCTTCCCTTCCTCTCT TGAAAT AGAGAGGATGGGAA-GAG AAAAGACAGCTCCTA TERM 622 612070 - 612030 - G 93 -13.5 -2.76696 | gap 1, overlap 612029 TCCTGCTTGAACAAC TC-CTTCCCTTCCTCTCT TGAAAT AGAGAGGATGGGAAGAGA AAAGACAGCTCCTAA CPj0531 613389 - 612562 - | SAM dependent methyltransferase ribC 613994 - 613392 - | riboflavin synthase subunit alpha CPj0533 614250 - 614708 + | transcriptional regulator NrdR dksA 614733 - 615107 + | DnaK suppressor TERM 623 615359 - 615370 + G 70 -7.2 -3.8599 | overlap 615357 ATATTTGTGATTCTT GGCC TCCT GGCC TATCTTTTTTTTAAA lspA 615113 - 615619 + | lipoprotein signal peptidase TERM 624 615629 - 615613 - f 78 -2.3 -5.59564 | overlap 615626 ACAAACTGAAAAAAA GAGAT AATATAG ATCTC TTCAAGAGAAGCTAA dagA_1 615665 - 617014 + | D-Ala/Gly permease CPj0537 617153 - 617512 + | hypothetical protein CPj0538 617532 - 617834 + | hypothetical protein TERM 625 619570 - 619559 - g 71 -3 -4.98672 | opp_overlap 619559, overlap 619554 CTGAAAAAGATAAAA TTGT CATC ACAA ATTTAGGATTCAACC pmp_19 618025 - 620868 + | polymorphic membrane protein A family TERM 626 620944 - 620892 - f 76 -4.2 -5.06016 | opp_overlap 620905, overlap 620905 ACTATAGAAATAAAA GAAGACTTAAAAAGCGCGTGGTTA TCATT CAAACACGCGCTTTTTTATCCCTT GCCTAATTTATCCAT TERM 627 620905 - 620931 + F 90 -8 -5.31456 | opp_overlap 620892 620905 AAGAAGACTTAAAAA GCGCGTGGTT ATCATTC AAACACGCGC TTTTTTATCCCTTGC TERM 628 620931 - 620905 - f 93 -8.7 -4.77216 | opp_overlap 620905, overlap 620892 AAGAAGACTTAAAAA GCGCGTGGTTA TCATT CAAACACGCGC TTTTTTATCCCTTGC TERM 629 621027 - 621038 + G 75 -5.8 -4.7373 | opp_overlap 621019 CTATGAAGTGGCTAC CAGC TACA GCTG TTTTTGCTGCCGTAC TERM 630 622607 - 622582 - g 79 -6.9 -4.72272 | opp_overlap 622584 622587 CCGCTTTAGTAAAAA TAAGACCGGAA ATTA TTCCGCTCCTA TTACCAAAGCGGCTA pmp_20 621014 - 626185 + | polymorphic membrane protein B family CPj0541 626490 - 627326 + | solute binding protein TERM 631 627560 - 627576 + G 72 -6.5 -4.29304 | overlap 627561 ACCCATTCCATGATC GGTTGGG TTC CCCAACA TTTCTCTTATGATCC TERM 632 627561 - 627575 + G 74 -10 -3.16859 | overlap 627560 CCCATTCCATGATCG GTTGGG TTC CCCAAC ATTTCTCTTATGATC TERM 633 627940 - 627950 + G 81 -4 -5.36441 | opp_overlap 627940 CCATACGACGAATTA CTTT AAT AAAG TTTTTTATATGAACA CPj0542 627323 - 628060 + | ABC transporter ATPase TERM 634 628752 - 628766 + GT 70 -3.6 -4.89393 | CATCTCGGTCCTCTT GAATAT CTT ATGTTC TTTTTCTGGAATTTG obgE 629849 - 628842 - | GTPase ObgE CPj0543 628045 - 628926 + | metal transport protein TERM 635 628950 - 628990 + gT 71 -4 -4.87803 | overlap 628947 628952 GCGCTTTTGGAAGCT TTGGAGGCATTCTTCCTG TTCGT CAGGAAGAAGATCATCAA TTTTATTTAAAGCTA TERM 636 629079 - 629095 + gT 85 -8.7 -4.08767 | overlap 629071 TTCTAAGTCTTCTTC GGGAGAG TTT CTCTCTC TTTTGGAGACATCGA TERM 637 629196 - 629222 + gT 86 -8 -4.72272 | overlap 629197 AGCTCCTTCAATGAT TCCTGGAATGTC AGC GATAATCCAGGG TTTTTGATACAAACG TERM 638 629197 - 629221 + gT 79 -9.3 -3.43042 | overlap 629196 GCTCCTTCAATGATT CCTGGAATGTC AGC GATAATCCAGG GTTTTTGATACAAAC TERM 639 629914 - 629883 - TR 100 -8 -5.95539 | opp_overlap 629883 CTTCAAACAAAAAAA GCTCGATTTGATGC CTGA GCAAAAAACCGAGC TTTTTTAATGTTTCT TERM 640 629883 - 629914 + Tr 84 -5.8 -5.34055 | opp_overlap 629883 CTTCAAACAAAAAAA GCTCGATTTGATGC CTGA GCAAAAAACCGAGC TTTTTTAATGTTTCT rpmA 630204 - 629950 - | 50S ribosomal protein L27 rplU 630549 - 630229 - | 50S ribosomal protein L21 ispF 630981 - 631511 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase cysJ 632551 - 631508 - | sulfite reductase rpsJ 632889 - 632572 - | 30S ribosomal protein S10 fusA 634981 - 632897 - | elongation factor G TERM 641 633875 - 633894 + g 75 -8.6 -3.85698 | AAACTCATCTCTATC TGTACGCT CATT AGCGTGCA TTTCTAAAAGGCGAG TERM 642 634367 - 634384 + g 73 -2.7 -5.11112 | TGCACAACGCTCTTT GAGATCT TCAG AAATCTC TTTTTCTTCCCATTT rs7 635489 - 634989 - | 30S ribosomal protein S7 rpsL 635908 - 635537 - | 30S ribosomal protein S12 TERM 643 635757 - 635787 + g 91 -5.5 -5.67529 | gap 1, opp_overlap 635755 635766, overlap 635758 635766 CGCACCCAAGCAACT TTCCTTA-AAGCCG AGTT CGGCTTCTTAGGAG TTTTTGTTTTTACTT TERM 644 635813 - 635848 + g 70 -5.4 -4.57482 | TACTTGAAGGCAAAC TCCCCGCTTTTGTGGG CACT TCTGCAAAGCTGGGGA TTTCTTTCTAGCTAG CPj0553 637068 - 636130 - | hypothetical protein CPj0554 637175 - 637465 + | hypothetical protein TERM 645 638180 - 638165 - g 80 -9 -3.94634 | opp_overlap 638165 638167 TATGAGGGTAAAGAA GAGCAG CTTG CTGCTC TGTGTCTACGTCAAA tsp 637619 - 639565 + | tail-specific protease crpA 640233 - 639643 - | hypothetical protein TERM 646 640179 - 640196 + g 86 -11.3 -3.40163 | opp_overlap 640177 640175, overlap 640179 TGTTTAGCACAGACT CAGGAGC AGCT GCTCCTG TTCCTGTTCCTCCTA TERM 647 640413 - 640447 + r 87 -10.1 -3.91984 | opp_overlap 640416, overlap 640416 GCTTATAAAACAAAA AAACCGCTTTAGTAC GTAAG GTACTAAAGCGGTAC TTCTTTGAAAGCTAT TERM 648 640416 - 640444 + r 100 -16.2 -3.02371 | opp_overlap 640416, overlap 640413 TATAAAACAAAAAAA CCGCTTTAGTAC GTAAG GTACTAAAGCGG TACTTCTTTGAAAGC TERM 649 640444 - 640416 - R 100 -16.2 -6.14618 | opp_overlap 640413 640416 TATAAAACAAAAAAA CCGCTTTAGTAC GTAAG GTACTAAAGCGG TACTTCTTTGAAAGC TERM 650 640501 - 640458 - R 100 -17.7 -3.53811 | opp_overlap 640459 640460 640462 640469, overlap 640459 640469 GGTACTTCTTTGAAA GCTATCCTAAAGCAGAGCG GAATAT CGCTCTGCTTTAGGATAAT TCCTTAGAATTTAAT TERM 651 640459 - 640500 + r 100 -19.7 -3.3907 | opp_overlap 640459 640458 640469, overlap 640460 640462 640469 GTACTTCTTTGAAAG CTATCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGATAA TTCCTTAGAATTTAA TERM 652 640500 - 640459 - R 100 -21.2 -2.72144 | opp_overlap 640459 640460 640462 640469, overlap 640458 640469 GTACTTCTTTGAAAG CTATCCTAAAGCAGAGCG GAATAT CGCTCTGCTTTAGGATAA TTCCTTAGAATTTAA TERM 653 640460 - 640499 + r 100 -23.2 -2.6296 | opp_overlap 640459 640458 640469, overlap 640459 640462 640469 TACTTCTTTGAAAGC TATCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGATA ATTCCTTAGAATTTA TERM 654 640462 - 640497 + r 100 -21.4 -2.84841 | opp_overlap 640459 640458 640469, overlap 640460 640459 640469 CTTCTTTGAAAGCTA TCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGA TAATTCCTTAGAATT TERM 655 640469 - 640490 + r 95 -12.3 -3.64162 | opp_overlap 640469 640459 640458, overlap 640462 640460 640459 GAAAGCTATCCTAAA GCAGAGCGG AATA TCGCTCTGC TTTAGGATAATTCCT TERM 656 640490 - 640469 - R 90 -11.6 -3.62864 | opp_overlap 640462 640460 640459 640469, overlap 640459 640458 GAAAGCTATCCTAAA GCAGAGCG GAATAT CGCTCTGC TTTAGGATAATTCCT omcB 642182 - 640512 - | 60 kDa cysteine-rich omp TERM 657 642313 - 642281 - R 75 -8.5 -3.36289 | opp_overlap 642278 TATTATCTGAATTAA GGTAGTCAGGAATTA ATT CATCTCCTAACTACC TGATCAATTTAAGTA omcA 642621 - 642349 - | 9 kDa-cysteine-rich lipoprotein CPj0559 643063 - 643251 + | hypothetical protein gltX 644933 - 643416 - | glutamyl-tRNA synthetase TERM 658 643481 - 643506 + g 73 -5.6 -4.42386 | gap 1 CCACAGTTGCAGCGA GCTTCTTAGGA ACGCC TCCTAA-AAGC TTTTCTGCATACACA TERM 659 644784 - 644815 + g 75 -7.4 -4.36595 | gap 1, overlap 644787 644807 ATCTTGGCGACTACG TGTTCTATCCGTATC TTC GATACGGA-GGATCA TTTTCCCTTTAAATC TERM 660 645069 - 645034 - R 100 -15.1 -5.29885 | opp_overlap 645038 AATCCAAAAATAAAA GAAACTCCTTAATTT AATAAA AAATTAAGGAGTTTC TCAAAAAAATCACGA TERM 661 645038 - 645065 + r 83 -10.1 -3.86015 | opp_overlap 645034 CAAAAATAAAAGAAA CTCCTTAATTT AATAAA AAATTAAGGAG TTTCTCAAAAAAATC euo 645725 - 645189 - | CHLPS euo protein TERM 662 645356 - 645376 + g 86 -11.9 -3.09635 | CTCCCTTACGCTCTC CTCGTATGG TTC CCGTACGAG TTGCATAGTAGACCT TERM 663 646205 - 646236 + r 76 -9.7 -2.83449 | opp_overlap 646209, overlap 646201 646209 TGCGATGAACCTTAG GAAACTCATTTTT GGTTTA AAAGATGAGTTTC TAATTATCGAAATGT CPj0562 647357 - 646236 - | CHLPS 43 kDa protein homolog_1 recJ 649377 - 647611 - | ssDNA exonuclease TERM 664 648507 - 648521 + g 81 -4.2 -5.31275 | overlap 648506 648508 TCAAGACAATATCTG TCGAAG TGA CTTCGC TTTTTTCTACTCCAC TERM 665 648508 - 648520 + g 72 -7.7 -3.78042 | overlap 648506 648507 CAAGACAATATCTGT CGAAG TGA CTTCG CTTTTTTCTACTCCA TERM 666 649394 - 649423 + r 77 -4.9 -5.1244 | opp_overlap 649388 649381 649393 649412, overlap 649395 649396 AATTTAATACCACAG GGGCCTTTGGGAC TAAA GTCCCAAAGGAGA TTTTTATATTGCTAC TERM 667 649395 - 649422 + r 73 -8.4 -3.6638 | opp_overlap 649388 649381 649393 649412, overlap 649394 649396 ATTTAATACCACAGG GGCCTTTGGGAC TAAA GTCCCAAAGGAG ATTTTTATATTGCTA TERM 668 649396 - 649421 + r 84 -11.9 -2.78743 | opp_overlap 649388 649381 649393 649412, overlap 649395 649394 TTTAATACCACAGGG GCCTTTGGGAC TAAA GTCCCAAAGGA GATTTTTATATTGCT secD_secF 653671 - 649463 - | bifunctional preprotein translocase subunit SecD/SecF TERM 669 650986 - 650970 - G 70 -9.5 -2.73875 | opp_overlap 650973, overlap 650973 TTTTTCCCAAGATCA GAAGAGA TCG TCTCTTC ACTGAGAACCTCGGG TERM 670 651039 - 651013 - G 80 -10.2 -3.55261 | opp_overlap 651012 651013, overlap 651011 651009 CGGGAACAAAAGACA TCGCTCCAGATT TTA AATCTGAGGCGA GTTTGCTCACTTCAC TERM 671 651013 - 651039 + g 75 -10.2 -2.87319 | opp_overlap 651013 651011 651009, overlap 651012 CGGGAACAAAAGACA TCGCTCCAGATT TTA AATCTGAGGCGA GTTTGCTCACTTCAC TERM 672 652661 - 652673 + g 81 -4.1 -5.26119 | opp_overlap 652672 TACTTGAACAGTTAA GTTCT TAG AGAGC TTTTGTTTTTCAACA TERM 673 652829 - 652814 - G 76 -2.6 -5.28481 | TATGGAACTAAAAAA TAATGA GGAC TCACTA CAATCTAATCGAAGC TERM 674 653058 - 653044 - G 80 -2.8 -5.4505 | GTCGCGAAGAAAAAA CCTCAA ATC CTGAAG AAAGGTTCTTGGCAT TERM 675 653741 - 653731 - R 93 -5.4 -6.09133 | overlap 653739 CAGTTGAAAAAAAAA TCGT CAA ACGA AGAGGAGCCCTCCAC CPj0565 654951 - 653851 - | hypothetical protein TERM 676 654552 - 654584 + g 79 -3.3 -5.40474 | overlap 654554 654557 AGATCTCTACTTGGG GACAGCCTGGATGAT AGT AGCATCCGGGTCGTA TTTTTTTCCAAGACT TERM 677 654554 - 654582 + g 70 -5.9 -4.34482 | overlap 654552 654557 ATCTCTACTTGGGGA CAGCCTGGATGAT AGT AGCATCCGGGTCG TATTTTTTTCCAAGA TERM 678 655060 - 655049 - H 82 -3 -5.59502 | opp_overlap 655049 655057, overlap 655057 CAAAAAATTAAAAAA CAAA AGAG TTTG TTTCAAAATTTTCAT TERM 679 655713 - 655698 - g 77 -6.2 -4.66537 | GTTTTCAACAGAAAA TTTTGG GAGA CCAAAA GAGGAAATTCAAGAA yaeS 655462 - 656214 + | hypothetical protein cdsA 656215 - 657141 + | phosphatidate cytidylytransferase cmk 657138 - 657788 + | cytidylate kinase plsC 657785 - 658423 + | glycerol-3-P acyltransferase TERM 680 658603 - 658593 - g 75 -2.4 -5.40072 | opp_overlap 658593 CGTGTTTTAAAAAAA GCTC CGA GGGC TATTGCTGAGGCCAT TERM 681 659069 - 659046 - g 71 -2.4 -5.09173 | gap 1, overlap 659034 659047 GAAGAGTTTAAAAAA CGCTCCCAACA GAA TGT-GGTAGCA TTACAGGCTAAGGAT argS 658428 - 660113 + | arginyl-tRNA synthetase murA 661443 - 660067 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 682 660405 - 660393 - G 91 -7.7 -4.75372 | AGCACTGATGAAAAA GCTGA CAC TCAGC TCCCATGTGCTGAAG TERM 683 662407 - 662380 - g 71 -2 -5.10516 | overlap 662382 662385 AAAAACCAAAGAAAA TATTACTAAGCC TGCG GACTTAGAAATG TGCATCGCTAAATTC CPj0572 661673 - 663940 + | hypothetical protein yebC 664725 - 664009 - | hypothetical protein CPj0574 665266 - 664712 - | hypothetical protein yhhY 665815 - 665300 - | amino group acetyl transferase prfB 666864 - 665812 - | peptide chain release factor 2 TERM 684 666627 - 666613 - GH 78 -7.2 -4.36914 | opp_overlap 666602 TTTCTTCTCACAAAA GAGAAA TTC TTTCTC TAAGTCTTCACAAAT CPj0576B 666708 - 666956 + | natural UGA frame-shift TERM 685 667029 - 667053 + FH 72 -5.8 -4.31697 | overlap 667027 AAACAAAAACCAAGA CTTTTTCTTC TTTTT GGAGAGAAAG TTCTTTGTTATATCT TERM 686 667198 - 667164 - fH 76 -2.8 -5.4251 | opp_overlap 667164, overlap 667166 CTGAGAGATAAAAAA GTTGGGATGAAGAG CTCAGGT CTCTTCTTACCACC TTTACTAGGAGTCAC TERM 687 667246 - 667230 - g 87 -4.5 -5.49729 | AATGAGTCAAAAAAA TAAAAAC TCT GCTTTTA TGCATCCCGTGAATA CPj0577 667216 - 667479 + | SWIB (YM74) complex protein TERM 688 667563 - 667544 - f 78 -10.6 -2.74563 | CTGATATGTTAAGTA CCCTGCCC TTTA GGGCGGGG ATATAAAGTGATCTT TERM 689 667856 - 667841 - g 82 -4.7 -5.40474 | opp_overlap 667843 AGGCTTCCAAAAAAA CATGC GCATTT GCATG GTCTTCGCATCGCTC TERM 690 668156 - 668142 - g 71 -2.1 -5.14563 | TCCCTGAGGAAAAAA GTCGT CCTAT ACAAC GCGCCATCATTGCTG yaeI 667727 - 668689 + | phosphohydrolase TERM 691 669197 - 669186 - g 78 -2.2 -5.45802 | CTTGCAAAAGAAAAA CAGC TCAC ACTG GTAGACGACATCGAA ispD 668682 - 669317 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 692 669689 - 669699 + GT 74 -6.8 -4.27117 | GCCAAACCTCTTCCC TGGC AGC GCCA TTTCTGTTATACCCC CPj0581 670755 - 670063 - | phosphoglycolate phosphatase truA 669314 - 670117 + | tRNA pseudouridine synthase A CPj0582 670824 - 671501 + | hypothetical protein CPj0583 671721 - 672041 + | hypothetical protein TERM 693 672375 - 672361 - g 81 -4.2 -5.33026 | GAATCTAAAGAAAAA GAAGTG GAA CTCTTC ATCCGTAAAAACGAG atoS 672028 - 673122 + | 2-component sensor TERM 694 673167 - 673177 + T 77 -5.4 -4.84492 | opp_overlap 673167 AGGGTTCTCAAAGAT CATC TAC GATG TTTTCTTATCCTTGA CPj0585 675138 - 673183 - | hypothetical protein TERM 695 675869 - 675886 + G 81 -5.5 -5.24129 | opp_overlap 675875 GGAGAATCGGGATGC GGAAAGG AAGT CCTCTCC TTTTTTATCCACCAC atoC 675347 - 676507 + | 2-component regulator TERM 696 676509 - 676520 + F 79 -3.6 -5.51353 | TCGCTTTAGCTTGAT CTCC TCTA GGGG TTTTTCTTGTTTTTC TERM 697 677294 - 677274 - gf 71 -3.4 -5.07486 | gap 1, opp_overlap 677279, overlap 677279 GATCTCCAAGAAAAA GATGAGCAT TCGT ATGCT-ATC TCAAGACGAGGCTAT yvyD 676762 - 677448 + | hypothetical protein TERM 698 677514 - 677491 - gf 93 -10.4 -3.9712 | gap 1, opp_overlap 677479 CGATCCCATTAGAAA TCGGGAGTTAG TTT CTA-CTCCCGA AGAAAAAGTCCGCCA CPj0588 677405 - 677950 + | hypothetical protein recO 677961 - 678719 + | DNA repair protein RecO TERM 699 678772 - 678793 + T 72 -5.9 -4.28361 | opp_overlap 678776 AAGGTACCGCTGCAC CAAACCTTT GAAA AAAGGTGTG TTTTCCTAGAATTCA CPj0590 679433 - 678834 - | hypothetical protein TERM 700 680170 - 680154 - g 71 -3 -5.01811 | overlap 680147 CTACTAAAGGAAAAA TTTCCA TGTCT CGGAAA GCCATCGCAAAAAAG yagE 679694 - 680344 + | YagE family protein CPj0593 681797 - 680709 - | hypothetical protein yidD 680474 - 680785 + | YidD family protein TERM 701 682332 - 682316 - g 77 -10.9 -2.84732 | overlap 682318 TCCAAATTCAGGAGA GAGCTCT TTT AGAGCTC CCAGAAGCCACCCCT TERM 702 683491 - 683476 - g 90 -4 -5.64321 | ACAAGAAAAGAAAAA GAAGAA ATCT CTCTTC AGGGCTCCAAACATA pheT 681904 - 684282 + | phenylalanyl-tRNA synthetase subunit beta TERM 703 684738 - 684752 + G 73 -8.6 -3.73224 | opp_overlap 684738 GGGCATGTCATAGAA GGAAGT TAT ACTTCC TTTAATGGGAAATAC TERM 704 684752 - 684738 - g 71 -8.6 -3.50393 | opp_overlap 684738 GGGCATGTCATAGAA GGAAGT TAT ACTTCC TTTAATGGGAAATAC CPj0595 684279 - 685250 + | hypothetical protein ada 685260 - 685781 + | methyltransferase oppC_2 687536 - 685797 - | oligopeptide permease TERM 705 686875 - 686892 + g 71 -4.1 -4.84527 | overlap 686861 CTTTGCTGTAATCTT TTAAGGC AAAT GCCTTCA TTTTTCATCTCTAAG oppB_2 689018 - 687537 - | oligopeptide permease oppA_5 691123 - 689000 - | oligopeptide binding lipoprotein TERM 706 690902 - 690885 - G 72 -6.3 -4.38774 | gap 1 AAGAGTAGAGCAAAA GCTTCGTC TCT GACGA-GC TTAGGAGCGAGCATC CPj0600 691468 - 691145 - | hypothetical protein TERM 707 691677 - 691645 - R 76 -6.4 -4.58395 | gap 1, opp_overlap 691645 691653, overlap 691653 CTCATGGGGGAAAAA GACAAA-TAGAGGGC TTTC ACCCTCTTGTTTGTC TTTTAAAAACTAAAA TERM 708 691645 - 691677 + r 78 -7.9 -4.09685 | gap 1, opp_overlap 691645 691653, overlap 691653 CTCATGGGGGAAAAA GACAAAT-AGAGGG CTTTCA CCCTCTTGTTTGTC TTTTAAAAACTAAAA TERM 709 691653 - 691668 + r 72 -6.1 -4.32763 | opp_overlap 691645 691653, overlap 691645 GGAAAAAGACAAATA GAGGG CTTTCA CCCTC TTGTTTGTCTTTTAA TERM 710 691843 - 691833 - R 71 -6.8 -4.18494 | overlap 691839 GATTCGTATCCAAAA GCAG AAC CTGC AACAGGAAGCACAAG CPj0601 692374 - 692054 - | hypothetical protein CPj0602 693426 - 692422 - | hypothetical protein TERM 711 692463 - 692480 + g 100 -4.2 -6.08563 | ATTTAATAAGTTTTT GAGATT TTTTAT AATCTC TTTTTTTTATCTCTT TERM 712 692956 - 692943 - G 75 -5.3 -4.76644 | AACATTCACGAAAAA GAAAG TAAT CTTTC CAAAAACAAAAACAA TERM 713 693190 - 693170 - G 87 -4.7 -5.42862 | overlap 693173 693174 AGATCCTCAAAAAAA TCACCTTTC CCC GAAAGAAGA TAGAGCCGTGTGACA TERM 714 693530 - 693520 - H 71 -5.4 -4.49556 | TTTTTAGCAAAGAAA GTCA CCG TGAC AACTCCAGCCTATCT hemH 693526 - 694509 + | ferrochelatase fliY 695266 - 694514 - | glutamine binding protein TERM 715 695168 - 695178 + g 73 -5.4 -4.72272 | GGCATCACGACCTAC GAGA ACT TCTC TTTTTACTCGAGAGC yhhF 696028 - 695468 - | methylase CPj0606 696765 - 696025 - | hypothetical protein TERM 716 696622 - 696608 - G 73 -8.6 -3.69469 | overlap 696606 ATAGCCCAAGAAATA TCTCCT GGG AGGAGA ACAATATCCTCTGGA glgC 698216 - 696891 - | glucose-1-P adenyltransferase TERM 717 698016 - 698006 - G 73 -2.6 -5.20333 | overlap 698000 GACCTATAACAAAAA TTTT TGA AAAA CCTGCACTAATTGCA TERM 718 698181 - 698170 - G 71 -4.4 -4.84359 | overlap 698171 698173 698175 TTATCTCGATAAAAA TGAG AGCT CTCA AAATTTGAGGCCTCC TERM 719 698325 - 698353 + r 80 -9.1 -3.61219 | opp_overlap 698324 698323 TTTTTAATAAATAGG TTCTAGAAATTAA GAT TCAATTTCTAGAA TTTCGGAAATTTTGT CPj0608 698966 - 698334 - | uridine 5'-monophosphate synthase CPj0609 699026 - 699310 + | hypothetical protein rho 700741 - 699347 - | transcription termination factor Rho coaE 701346 - 700738 - | dephospho-CoA kinase polA 703952 - 701340 - | DNA polymerase I TERM 720 703444 - 703430 - G 71 -10 -2.70994 | overlap 703429 703432 CTAACGCTAGATAAT CAGGGA TAT TCCCTG GAGGAATCCCATAAC sohB 704977 - 703976 - | protease adt_2 706723 - 705101 - | ADP/ATP translocase TERM 721 706462 - 706444 - G 100 -13.2 -5.5604 | TGAAGCAATAAAAAA CGGTATCC CGA GGATACCG ACTGCCTAACCACCC pgsA_1 707458 - 706952 - | glycerol-3-P phosphatidyltransferase dnaB 708112 - 709461 + | replicative DNA helicase TERM 722 709635 - 709618 - f 80 -7.1 -4.56597 | GTTCCGCCGGAAAAA TTCAAAC TTCG GTTTGAA TATGAAGAATCTTCG TERM 723 709666 - 709645 - f 70 -7.3 -3.82084 | opp_overlap 709638, overlap 709646 TTTGAATATGAAGAA TCTTCGTCA CTTA TGACGAAGG GGATGTCAAATCGAT TERM 724 709665 - 709646 - f 81 -10.8 -2.88768 | opp_overlap 709638, overlap 709645 TTGAATATGAAGAAT CTTCGTCA CTTA TGACGAAG GGGATGTCAAATCGA gidA 709805 - 711640 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA lplA_2 711627 - 712334 + | lipoate-protein ligase A ndk 712765 - 712331 - | nucleoside diphosphate kinase ruvA 713460 - 712837 - | Holliday junction DNA helicase motor protein ruvC 713968 - 713462 - | Holliday junction resolvase CPj0622 715073 - 714111 - | hypothetical protein TERM 725 715469 - 715434 - R 82 -8.5 -4.05875 | opp_overlap 715434 TTCAAAAAAGGGAAA GGTATGCCTTAAGTT AAAGTG AACTTAAACCATACC TTTAAAAATAGCTAT TERM 726 715486 - 715506 + r 73 -8.3 -3.53012 | overlap 715488 TTAAAAATAGCTATT CTTCTTCTG TAG CAGAAGATG TTTCGGGGAAGAACA TERM 727 715488 - 715504 + r 79 -9.5 -3.34398 | overlap 715486 AAAAATAGCTATTCT TCTTCTG TAG CAGAAGA TGTTTCGGGGAAGAA CPj0623 716314 - 715481 - | hypothetical protein gapA 717336 - 716329 - | glyceraldehyde-3-phosphate dehydrogenase TERM 728 717009 - 717030 + g 95 -5.9 -5.60993 | opp_overlap 717014 GTTTCGCTCCAGCTT GAATATGCT TCTC AGCATCTTC TTTTTTTGTGAACAA rplQ 717806 - 717378 - | 50S ribosomal protein L17 rpoA 718937 - 717813 - | DNA-directed RNA polymerase subunit alpha TERM 729 717949 - 717959 + g 70 -5.4 -4.42464 | AATTTATTCTTGATC TCAC ACA GTGA TTTCTTTCCAAAATT rs11 719359 - 718958 - | 30S ribosomal protein S11 rpsM 719749 - 719381 - | 30S ribosomal protein S13 secY 721178 - 719805 - | preprotein translocase subunit SecY rplO 721637 - 721203 - | 50S ribosomal protein L15 rpsE 722127 - 721630 - | 30S ribosomal protein S5 rplR 722516 - 722145 - | 50S ribosomal protein L18 rplF 723078 - 722527 - | 50S ribosomal protein L6 rpsH 723506 - 723105 - | 30S ribosomal protein S8 TERM 730 723336 - 723318 - G 73 -5.2 -4.66953 | opp_overlap 723320 723322, overlap 723320 GGAATATTGTAAAAA CACACGCA TAG CGCGTTTG CGGTTTTCTTCCTTT rplE 724066 - 723524 - | 50S ribosomal protein L5 TERM 731 723735 - 723719 - G 73 -5.8 -4.46212 | overlap 723721 TCCTTTATTAGAAAA TCCGCG GAAGT CGCGAA TCCGTGGAGAAACAA rplX 724403 - 724068 - | 50S ribosomal protein L24 rplN 724785 - 724417 - | 50S ribosomal protein L14 rpsQ 725068 - 724808 - | 30S ribosomal protein S17 rpmC 725279 - 725061 - | 50S ribosomal protein L29 rplP 725698 - 725282 - | 50S ribosomal protein L16 rpsC 726398 - 725727 - | 30S ribosomal protein S3 TERM 732 726119 - 726131 + g 74 -7.7 -3.9122 | CTTCTTTTCCGGTAA GAGCT CTG AGCTC TTCTTTAAGCAGATC TERM 733 726247 - 726260 + g 85 -2.4 -5.7946 | ACAAATCCAGCGGCA CCTT GACATG AAGG TTTTTTTCTTAAAAA rplV 726749 - 726414 - | 50S ribosomal protein L22 rpsS 727034 - 726768 - | 30S ribosomal protein S19 rplB 727894 - 727040 - | 50S ribosomal protein L2 rplW 728251 - 727916 - | 50S ribosomal protein L23 rplD 728942 - 728268 - | 50S ribosomal protein L4 TERM 734 728734 - 728750 + g 86 -3 -5.626 | CGGGCATTACCCGTA CCTTTT TGTTT GAAAGG TTTTTTTGTAGAATG rplC 729634 - 728975 - | 50S ribosomal protein L3 TERM 735 729743 - 729733 - R 82 -5.4 -5.26119 | overlap 729728 729738 TCTCTAAAAAGAAAA GGAA ATT TTCC CTTAAGAAAATAAAG TERM 736 729896 - 729867 - R 100 -14.5 -4.43283 | opp_overlap 729867, overlap 729882 TTATAGAAATAGAAA GTCGCTTCCAAAA AATT TTTTAGAAGCGAC TTCTTTAAAATAAAG TERM 737 729867 - 729896 + r 100 -12.3 -3.9392 | opp_overlap 729867 729882 TTATAGAAATAGAAA GTCGCTTCCAAAA AATT TTTTAGAAGCGAC TTCTTTAAAATAAAG CPj0648 730924 - 729923 - | hypothetical protein TERM 738 730487 - 730497 + g 82 -2.4 -5.59962 | opp_overlap 730487 TAGCATTTTACTATA CTCC CCA GGCG TTTTTCTTTCTTTTG TERM 739 730615 - 730629 + g 71 -5 -4.62336 | opp_overlap 730615 CATTAGCTAAGGCAA CAACTT CTC GAGTTG TTTTTAACATACCCT fmt 731993 - 731028 - | methionyl-tRNA formyltransferase lpxA 732822 - 731983 - | UDP-N-acetylglucosamine acyltransferase fabZ 733296 - 732835 - | (3R)-hydroxymyristoyl-ACP dehydratase lpxC 734156 - 733308 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 740 733837 - 733849 + g 78 -9.1 -3.83998 | ACATTTGAGCTTCCA TCCCC TAT GGGGA TTTCCTCTCCACTAC lnt 735811 - 734186 - | apolipoprotein N-acyltransferase TERM 741 734539 - 734557 + g 72 -9.6 -3.18832 | opp_overlap 734539 734542, overlap 734537 734542 CATTTGTTAAGTTAA CAAGGAGT TCG GCTCCTTG TCTCTTGTAGGATTG TERM 742 734776 - 734758 - G 71 -8.9 -3.37796 | opp_overlap 734766 CGCCACCAGGCACAA GGATACG CTTAT CGTATCC TACGGAAATTCCTTT TERM 743 735631 - 735606 - G 73 -2.5 -5.11063 | AGCATCCAAGAAAAA TGAATCCCCTC TATT GTGAAGATCCA GAAAAAACAGGATAC yciA 736288 - 735821 - | acyl-CoA thioesterase TERM 744 736349 - 736375 + r 93 -14 -2.57092 | opp_overlap 736354, overlap 736354 ATAGTATCGGTCAAC TGAAAGAAAATC TAT GATTTTCTTTCA TAAGTTACTGAAATT TERM 745 736354 - 736370 + r 75 -8.1 -3.80114 | opp_overlap 736354, overlap 736349 ATCGGTCAACTGAAA GAAAATC TAT GATTTTC TTTCATAAGTTACTG TERM 746 736370 - 736354 - R 75 -8.1 -3.75332 | opp_overlap 736349 736354 ATCGGTCAACTGAAA GAAAATC TAT GATTTTC TTTCATAAGTTACTG dnaQ_2 737168 - 736419 - | DNA polymerase III subunit epsilon TERM 747 737203 - 737222 + G 75 -7.2 -4.28488 | overlap 737199 TATCTTTGTTTGATA TCCTTCTG ACTG TAGAAGGA TTTCTGTGTTTAACT CPj0656 737193 - 737372 + | hypothetical protein yjeE 737794 - 737369 - | hypothetical protein CPj0658 738489 - 737773 - | hypothetical protein TERM 748 738231 - 738241 + g 70 -5.4 -4.57516 | opp_overlap 738229 738231 ATGGGCAAATATAGA TACG CTT CGTA TTTTCGTTTACCTGT trxA 738854 - 739162 + | thioredoxin TERM 749 739183 - 739209 + T 71 -5.2 -4.4715 | opp_overlap 739183 CGCTGCAATATTAAA CCGTAGGATT CTTTTGC AATGCTACGG TTTTCTGCCTTACCA spoU_2 739648 - 739178 - | rRNA methylase TERM 750 739280 - 739301 + g 70 -2.9 -5.02201 | AGAACGGATGTCTTG TTGCATGGG AATG CGCAGGCAA TTTTTATAATATTTT TERM 751 739582 - 739544 - G 100 -14.7 -4.87133 | gap 2 ATCGGCTAAAGAAAA GCCCAAGG-GCCGAAC-CA AAA TGAGTTCGGCGCCTAGGGC TACACAAGTTCTACC mip 740421 - 739645 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 752 740060 - 740070 + g 74 -4 -4.99665 | AATTTTTCTGCCAAT GAAA GAT TTTC TTTTGATTTTTTTTC aspS 742244 - 740490 - | aspartyl-tRNA synthetase TERM 753 740603 - 740589 - GR 70 -7.1 -3.72576 | CTGTGTTTTAGGAAA CGCGA TGACC TCGCG AATGCTCTCTGCTGC hisS 743511 - 742219 - | histidyl-tRNA synthetase TERM 754 743497 - 743487 - GR 73 -8.2 -3.56811 | overlap 743481 GAAATATATCAAAGA CCCC TTT GGGG AGAGTTACAGTCACG CPj0664 744078 - 743875 - | hypothetical protein TERM 755 744421 - 744400 - g 91 -6.7 -5.4505 | opp_overlap 744400 GTGGTCAAGAAAAAA TACAAATAC TGGC GTATTCGTA TTTTCTATAGCATGT TERM 756 745010 - 744993 - g 80 -9.9 -3.60094 | TATAGAGAAGTACAA GCGTGAT CCCC ATCACGC ACATCACGAGGGCAA uhpC 744322 - 745689 + | hexosphosphate transport TERM 757 749128 - 749112 - g 73 -3.7 -5.03715 | ATCAGGTGCAAAAAA TGTCATT TAC AATGTCA ACCTCTGGCAAAGAA dnaE 745709 - 749431 + | DNA polymerase III subunit alpha CPj0667 750379 - 749495 - | hypothetical protein TERM 758 751387 - 751377 - g 82 -2.4 -5.68489 | GAGAAGAAGAAAAAA GCCG AGG CTGC GAATATCTATTACCG CPj0668 750531 - 751487 + | hypothetical protein CPj0669 751501 - 752100 + | hypothetical protein rsbW 752087 - 752521 + | sigma regulatory factor-histidine kinase CPj0671 752952 - 752524 - | hypothetical protein TERM 759 754131 - 754164 + G 84 -5.3 -5.252 | CATGCGGACGCCTTC CCTATTGAACAAGGA GATC TTCTTGGTCATTGGG TTTTTTATGACGATG dacF 753063 - 754373 + | D-Ala-D-Ala carboxypeptidase CPj0673 754609 - 754788 + | hypothetical protein TERM 760 754874 - 754889 + T 83 -10.4 -3.22076 | opp_overlap 754871 754868, overlap 754873 754871 CTTTTGAAAGATTCG GGCGCT CTAC AGCGCC TCTATTCTAGATTTT TERM 761 754890 - 754900 + T 73 -4 -5.03314 | opp_overlap 754871 754868, overlap 754873 754871 GCGCTCTACAGCGCC TCTA TTC TAGA TTTTTTGAAAATGAG fmu 755990 - 754896 - | RNA methyltransferase TERM 762 754928 - 754957 + g 74 -4.2 -4.98522 | opp_overlap 754928 GAGAAGTAAAAAATG CGTCGCCCTTAC CTACTT GTAAGGGAAGCG TTTTTCTGTGGACTT TERM 763 755522 - 755558 + g 100 -13.9 -3.90922 | opp_overlap 755519 ATGCCTCAGGAAGCT CTCCAGGAGAACTTGGA TAT TCTAACTTCTCTTGGAG TTCTTTGACGGAGAT CPj0675 757241 - 756087 - | hypothetical protein TERM 764 756232 - 756246 + g 70 -5.6 -4.35116 | ATGGTAATCATTTTA TCCCAC AGG GCGGGA TTTTGGTCTCGAATA TERM 765 756555 - 756545 - G 100 -6.8 -5.65927 | opp_overlap 756554 CACTCAAAGAAAAAA GCTG GAT CAGC TCGCGTAACAATACG CPj0676 758539 - 757370 - | hypothetical protein TERM 766 758110 - 758096 - G 86 -5.7 -5.35815 | TACATGAAAGAAAAA GCTTC GGCAT GAAGC TAGTGCTGTTTCTAA CPj0677 759723 - 758575 - | hypothetical protein TERM 767 759362 - 759378 + g 75 -8.7 -3.6215 | GACCCCGCCGTAGGA GGTTGAG GTG CTCGACC TTTCCCATGCGTTGC CPj0678 760642 - 760001 - | hypothetical protein TERM 768 760794 - 760771 - R 83 -4.7 -5.47159 | TTCTAAGAGAAAAAA GACGTTTTT ATAATA AAAAACATC TAAAGTTCAGGGAGT TERM 769 760809 - 760837 + r 86 -10.3 -3.55444 | CTAAAGTTCAGGGAG TTATCTCCAGAGG AGT CCTCTGGTGAAAA TTTGAAAAATCGGAA pgk 762252 - 761044 - | phosphoglycerate kinase ygo4 763570 - 762290 - | phosphate permease TERM 770 762836 - 762847 + g 82 -2.2 -5.60864 | TTCTTTCAAACGATA GGTA AGAC TGCC TTTTTTTGGTGTATC CPj0681 764251 - 763577 - | hypothetical protein dppD 764306 - 765280 + | ABC ATPase dipeptide transport TERM 771 765625 - 765613 - g 77 -6.3 -4.60924 | opp_overlap 765613, overlap 765617 TAAACCCGCGAAAAA CTATC CTA GATAG TTTAGGCCACTCTCT TERM 772 766183 - 766173 - g 75 -5.4 -4.82901 | CGTTGTCCACAAAAA CAAG AAG CTTG CAAGTCAGAGATCAT dppF_2 765270 - 766244 + | ABC ATPase dipeptide transport TERM 773 766381 - 766410 + T 71 -7.9 -3.55444 | opp_overlap 766384, overlap 766384 TGTAAATACAAAACA AAAGCCATTCCAT ATCC ATGGAATGGCTAC TTTAAGACCTAACGC TERM 774 766384 - 766407 + T 93 -14 -2.91144 | opp_overlap 766384, overlap 766381 AAATACAAAACAAAA GCCATTCCAT ATCC ATGGAATGGC TACTTTAAGACCTAA TERM 775 766407 - 766384 - T 100 -14 -5.2894 | opp_overlap 766381 766384 AAATACAAAACAAAA GCCATTCCAT ATCC ATGGAATGGC TACTTTAAGACCTAA parB 767360 - 766500 - | chromosome partitioning protein CPj0685 767390 - 767542 + | hypothetical protein CPj0686 767683 - 767495 - | hypothetical protein CPj0687 767886 - 768539 + | hypothetical protein CPj0688 768704 - 769462 + | hypothetical protein yfhO_1 770726 - 769506 - | NifS-related aminotransferase TERM 776 770003 - 770015 + g 84 -6.3 -5.07567 | CTACTGGAGGCAACT GATCT AAT AGATC TTTTTTCCCATATAA CPj0690 772002 - 770755 - | ABC transporter membrane protein abcX 772774 - 772004 - | ABC transporter ATPase CPj0692 774234 - 772780 - | cysteine desulfurase activator complex subunit SufB TERM 777 773632 - 773605 - G 73 -8.6 -3.70019 | gap 1, opp_overlap 773605, overlap 773603 773613 ATTAATCCGAAAATA GGTAGAAATATCC ATA GGACATTTC-ACC CCTTTAGGAACATAA TERM 778 774202 - 774182 - G 74 -6.1 -4.44245 | opp_overlap 774182 774183, overlap 774183 ATAGGAGTCACAAAA CCGTAAGGA TAG TCCTCACGC TCTTCTAAAAAAACC TERM 779 774201 - 774183 - G 74 -9.6 -3.25824 | opp_overlap 774183 774182, overlap 774182 TAGGAGTCACAAAAC CGTAAGGA TAG TCCTCACG CTCTTCTAAAAAAAC TERM 780 774369 - 774338 - R 93 -9.5 -4.29119 | CAGTATAACAAAGAA GGCTTGAAAGACG AACCTA CCCCTTTCAAGCC CAGAAGAAAAGAGAA CPj0693 775578 - 774559 - | hypothetical protein pbp2 778921 - 775649 - | PBP2-transglycolase/transpeptidase TERM 781 776474 - 776462 - G 70 -2.6 -5.03314 | GCCATCTTTAAAAAA GCCC ACGTG AGGC TTAGAACTCCTATAG TERM 782 776964 - 776979 + g 77 -6.2 -4.7033 | opp_overlap 776964 AGAAATGTATCCAAA TGTTCT TGGC AGAACA TTTTATATTGCCTTG TERM 783 777899 - 777863 - G 77 -10.9 -2.83788 | opp_overlap 777864 777892, overlap 777862 ATCTAACGCAATAAT GGCTCCTCCTTTAATCC AAG GGAACAAAGGAGGAAGC TTCTCTCGTTTCTTC TERM 784 777864 - 777899 + g 80 -9.8 -3.68504 | gap 1, opp_overlap 777863 777862, overlap 777892 TCTAACGCAATAATG GCT-CCTCCTTTAATCC AAG GGAACAAAGGAGGAAGC TTCTCTCGTTTCTTC TERM 785 778507 - 778540 + g 77 -10.5 -3.16564 | gap 1, opp_overlap 778507, overlap 778499 AAGCTTTTGCATGAA TTGCATCTTCGATCGC CTC GCGATCTAA-ATGCAA TTCCTGAGATAAAAG TERM 786 778540 - 778507 - G 77 -10.5 -3.14463 | gap 1, opp_overlap 778499 778507 AAGCTTTTGCATGAA TTGCATCTTCGATCGC CTC GCGATCTAA-ATGCAA TTCCTGAGATAAAAG TERM 787 779178 - 779165 - H 93 -3.9 -6.11392 | overlap 779166 AAATAAACAAAAAAA TTTCT CAAG AGAAA AAGACTTGAGAAGGT TERM 788 779274 - 779256 - H 93 -7.5 -5.48787 | overlap 779247 AGAATATACAAAAAA GCTATAG CTTTC CTATAGC TCATAACAGAAGTTC TERM 789 779591 - 779621 + G 74 -10.4 -2.64218 | overlap 779590 TTTGCTGGTTCTGTC GGCTCCTTACAAGC CTT GCCTGTAGGGAACC CTTCTGATCCAAGCT ompA 779537 - 780706 + | major outer membrane protein TERM 790 780739 - 780763 + F 85 -9.4 -3.96327 | overlap 780757 CTCCTCACCTTGTTA TCAGAGTCTA CATGT TAGGCTCTGA TTTATGCTCAGAGCT TERM 791 780757 - 780777 + F 73 -6.9 -3.93401 | overlap 780739 780767 780768 GAGTCTACATGTTAG GCTCTGA TTTATGC TCAGAGC TTCTTAATTTCTGAG TERM 792 780767 - 780795 + F 79 -5.3 -5.06414 | overlap 780757 780768 GTTAGGCTCTGATTT ATGCTCAGAGCTT CTT AATTTCTGAGCAA TTTTTATTCCCCCCC TERM 793 780768 - 780794 + F 77 -8.8 -3.63367 | overlap 780757 780767 TTAGGCTCTGATTTA TGCTCAGAGCTT CTT AATTTCTGAGCA ATTTTTATTCCCCCC rpsB 781090 - 781923 + | 30S ribosomal protein S2 TERM 794 782566 - 782553 - g 75 -2.4 -5.27938 | ATTGCTAAAGAAAAA GAAG TGATTG CTTC TCAAATTCAAGGAAA tsf 781923 - 782771 + | elongation factor Ts TERM 795 783334 - 783344 + G 78 -5.4 -5.02074 | AAATATGATTTTGTT TCCT ATA AGGA TTTTTTGAGCAATCA pyrH 782779 - 783525 + | uridylate kinase frr 783503 - 784045 + | ribosome recycling factor TERM 796 784038 - 784022 - f 84 -6.6 -5.09521 | opp_overlap 784025, overlap 784027 TTAACAAAGCAAAAA GAAGCT GAAAT AGCTTC AATATAAGTATACTT CPj0700 784418 - 784933 + | hypothetical protein karG 784920 - 785996 + | ATP:guanido phosphotransferase TERM 797 786174 - 786129 - T 87 -6.4 -5.4833 | GTAGGGAACAAAAAA GCCAAGAAAACATAAAGT TATACGGCCG ACTCTACATCTTCTTGGC TTTCCCCCTGAATGC yscC 789006 - 786247 - | YopC/Gen secretion protein D CPj0703 790511 - 789003 - | S/T protein kinase fliN 791642 - 790527 - | type III secretion system protein TERM 798 791356 - 791376 + g 76 -6.9 -4.5442 | overlap 791345 TCCTGAAGGTCTTCT TCTGATGTT AGG AACAACAGA TTTTCTACTTCCCAA TERM 799 791569 - 791544 - G 93 -11.9 -3.72893 | opp_overlap 791544 CAGTTCCTTAGGAAA CTCAGGAGCAG CAAC CTGCTCCTCAG TCTTCCCTAGGGAAC TERM 800 791544 - 791569 + g 86 -11.9 -3.08679 | opp_overlap 791544 CAGTTCCTTAGGAAA CTCAGGAGCAG CAAC CTGCTCCTCAG TCTTCCCTAGGGAAC CPj0705 792494 - 791652 - | hypothetical protein CPj0706 793004 - 792498 - | hypothetical protein TERM 801 792814 - 792838 + g 100 -10.1 -5.13473 | CTTGTTGTACCTTCG TCCAACAAATC GCG GAGTTGTTGGA TTTTTTGCATATAGT yscN 794350 - 793022 - | type III secretion system ATPase TERM 802 793521 - 793480 - G 100 -12.9 -5.07567 | GTAGAGTGGAAAAAA CCGATGGAGTGTATCCTGC TCTA GCAGGAGGCTCTCCAGCGG CTAACCCCACTTCCC TERM 803 794135 - 794120 - G 71 -9 -3.30243 | ACTCACTCCTGATAA CTCTCC TAAA GGAGAG AGAAAGGCAAAACTC CPj0708 795026 - 794352 - | hypothetical protein CPj0709 795509 - 795060 - | hypothetical protein CPj0710 795782 - 795528 - | hypothetical protein CPj0711 796052 - 795804 - | hypothetical protein CPj0712 798636 - 796099 - | FHA domain-containing protein TERM 804 798142 - 798122 - G 70 -2.5 -5.0538 | overlap 798125 GCTGATGCTAAAAAA GCATCAGCA AGC TCCTGATCC CCACTTGTAATTGGA CPj0713 799042 - 798650 - | hypothetical protein hemA 800428 - 799409 - | glutamyl-tRNA reductase TERM 805 800857 - 800882 + H 74 -9.2 -3.11326 | opp_overlap 800860, overlap 800860 CAAGACTAAGATCCA TAAGTTTCGT CTTAGT ACGAAACTTA TATGTTGAGCTTGTC TERM 806 801880 - 801870 - g 75 -3.2 -5.16841 | GCATAGCAATAAAAA TAGC CTC GCCA ATTTTTGAATCGCAA TERM 807 802413 - 802428 + G 72 -6.2 -4.3255 | ACGGTATGCATATTC GTAATC TTTT GATTAC TTTCTTCCTTAAAAC gyrB_2 800978 - 802786 + | DNA topoisomerase IV subunit B TERM 808 803937 - 803913 - g 70 -10 -2.56728 | opp_overlap 803912 803915, overlap 803891 803912 803915 ATGACCTACATCAAG CAGTGCTCCA TGCTC TGGAGCCCTG GCTTCATGAGCTTGC gyrA_2 802790 - 804226 + | DNA topoisomerase IV subunit A CPj0717 804331 - 804630 + | hypothetical protein CPj0718 804630 - 804950 + | hypothetical protein sfhB 805237 - 806214 + | pseudouridine synthase CPj0720 806324 - 806560 + | hypothetical protein TERM 809 806584 - 806557 - f 70 -4.2 -4.69656 | gap 1, opp_overlap 806560 806562, overlap 806552 806560 806561 AATTATGGAAGAAAA GTAGC-CTTAAGC CTA GCTTAAGTACTTC TCATTGAAATTGCTA TERM 810 806562 - 806578 + F 73 -9.5 -2.89447 | opp_overlap 806561 806560 806557 806552, overlap 806560 TGGAAGAAAAGTAGC CTTAAGC CTA GCTTAAG TACTTCTCATTGAAA TERM 811 806670 - 806660 - f 74 -6.8 -4.40605 | ACGCATAAAGATAAA CTCG GAC CGAG CAGGACTCGAACCTG TERM 812 806829 - 806818 - f 70 -4.4 -4.70583 | TCTACCAAGAGAAAA GTCA ATTC TGAC ACAAGATTTTCTTGT TERM 813 807404 - 807388 - g 84 -3.6 -5.50499 | GTACATTTAAAAAAA GGGCAG TTTCT CTCCCC TTGGGATATGGAAGG TERM 814 807474 - 807458 - g 73 -3.7 -5.02606 | CAGGAAATAACAAAA TCTTACT TAC AGAAAGA GGGTGTAGCTTCGGT kdsA 807004 - 807813 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 815 807980 - 807968 - g 95 -3.3 -5.93252 | TTTAAAAATAAAAAA GGTGA ATG TCTCC AAACAAATTTGCTCT CPj0722 807810 - 808298 + | hypothetical protein TERM 816 808682 - 808713 + G 75 -10.2 -2.87132 | opp_overlap 808661 808683 808705 808711, overlap 808661 TGATGATTTGCAACT AGGTTCCTGCCT CCATAAAA AGGCAGGAACCC TATCTGGAGGGGAAC TERM 817 808712 - 808683 - g 100 -15.1 -2.72661 | opp_overlap 808661 808682, overlap 808661 808705 808711 GATGATTTGCAACTA GGTTCCTGCCTCC ATAA AAAGGCAGGAACC CTATCTGGAGGGGAA yhbG 808305 - 809027 + | ABC transporter ATPase CPj0724 809848 - 809024 - | hypothetical protein TERM 818 809513 - 809489 - G 70 -2.9 -4.95547 | opp_overlap 809489, overlap 809481 TTGACAATAAGAAAA TCCTAACAAAA GGA TTCTATGAGGA CGACGCATCTCCTCT CPj0725 810132 - 809905 - | hypothetical protein CPj0726 812693 - 810198 - | hypothetical protein TERM 819 811140 - 811155 + g 73 -3.9 -4.92756 | opp_overlap 811135, overlap 811141 CCGAAAATAACTTCG TGCCG TAGATT CGGCG TTTGTTTTTGCTAGT CPj0727 812898 - 815516 + | hypothetical protein TERM 820 815520 - 815553 + T 75 -4.7 -4.86902 | gap 1, overlap 815522 TATTCCAACTAATTG CATCC-TTAGGAGTTT TTA GAGCTCCTAAAGGATC TTTTCTTCTCCTTTA TERM 821 815522 - 815551 + T 73 -7.3 -4.03023 | gap 1, overlap 815520 TTCCAACTAATTGCA TCC-TTAGGAGTTT TTA GAGCTCCTAAAGGA TCTTTTCTTCTCCTT TERM 822 815764 - 815812 + T 72 -9.1 -2.69151 | gap 1, opp_overlap 815761 815759 815794, overlap 815761 ATTTATTGAAGATCG TTCTAGTGTGTTGGTAAGGCCT CAACAA AGGCCTTACCAAAGCAC-ATAA TAATCTCTCCAAACG CPj0728 817798 - 815843 - | hypothetical protein TERM 823 817324 - 817338 + g 72 -7.8 -3.79747 | overlap 817335 TCTTAGTTTCCCACT CCGCAG CGA TTGCGG TTTCCTCATCAGTAG TERM 824 817879 - 817855 - R 100 -7.9 -6.60239 | opp_overlap 817854 817855 AAAAATAAAAAAAAA GCTCTCACTAA TAA TTAATGCGAGC CTGTTTTTAAAGATT CPj0729 819178 - 817910 - | hypothetical protein mviN 820924 - 819281 - | integral membrane protein TERM 825 819481 - 819438 - GH 82 -4.7 -5.36441 | gap 1, opp_overlap 819441, overlap 819442 CTCTCAGATAAAAAA GCAATTGCTTGAGCCGTTAT GGAGG ATAAGGGC-CAAGCAAGTGG TGTGAGGGGGTTTAA TERM 826 819477 - 819442 - GH 82 -8.5 -4.01646 | gap 1, opp_overlap 819441, overlap 819438 CAGATAAAAAAGCAA TTGCTTGAGCCGTTAT GGAGG ATAAGGGC-CAAGCAA GTGGTGTGAGGGGGT TERM 827 819931 - 819907 - GH 93 -10 -4.18494 | CACTCTGAGGGAAAA GTCCGTGTTC ATAAA GGACACGGAC TCCAGGTAAAGCTAA TERM 828 820524 - 820513 - GH 77 -5.8 -4.74215 | ACATCATTAAGAAAA TGCC ACAG GGCA AGAGTATCATAGTAA CPj0731 820908 - 821084 + | hypothetical protein TERM 829 822226 - 822209 - g 73 -3.5 -5.00765 | AACGAACTAGAAAAA TTCCTAA GTAT TTAGAAA CCCCTGGTGGGCCTG nfo 821419 - 822300 + | endonuclease IV TERM 830 822364 - 822387 + T 81 -7.5 -4.37092 | gap 1, opp_overlap 822364 TGAAATCAAAAAAAA CGCCATACTG ATATA CAGT-TGGCG TTTTCTAGAAAAGAT TERM 831 822387 - 822364 - T 100 -7.5 -6.02546 | gap 1, opp_overlap 822364 TGAAATCAAAAAAAA CGCCATACTG ATATA CAGT-TGGCG TTTTCTAGAAAAGAT rpsD 823048 - 822419 - | 30S ribosomal protein S4 TERM 832 822721 - 822709 - G 75 -9.1 -3.71848 | GTCCGTGAGCAACAA GCTGC TGA GCAGC AAAAATTGTTTTTGC yceA 823265 - 824239 + | hypothetical protein CPj0735 824989 - 824321 - | uridine kinase TERM 833 825138 - 825084 - RH 89 -6.7 -5.58522 | gap 1, opp_overlap 825085, overlap 825085 825137 GAGACAAAAGAAAAA GCTTCGTGATCAGAAATTGA-AATCT TTAG ATATAGTCATTTTCTGATCACGAAGT TTAGGATAGAATTCT TERM 834 825085 - 825137 + rH 86 -10.2 -3.61103 | gap 1, opp_overlap 825084 825085 AGACAAAAGAAAAAG CTTCGTGATCAGAAATTGA-AATCT TTAG ATATAGTCATTTTCTGATCACGAAG TTTAGGATAGAATTC TERM 835 825137 - 825085 - RH 93 -10.2 -3.92673 | gap 1, opp_overlap 825085, overlap 825084 AGACAAAAGAAAAAG CTTCGTGATCAGAAATTGA-AATCT TTAG ATATAGTCATTTTCTGATCACGAAG TTTAGGATAGAATTC ygeD 827007 - 825310 - | efflux protein TERM 836 825871 - 825854 - GH 80 -2.7 -5.4251 | CCGATATAGAAAAAA CTTGTTT CAGG AGACAAG CCTAAGTTACTTCCC TERM 837 826380 - 826391 + gH 71 -4.4 -4.79451 | opp_overlap 826380, overlap 826375 ATAAATCTTTGAAAC TCAC CAAG GTGA TTTTCTGTTTCACAT TERM 838 827116 - 827102 - gH 88 -7.2 -4.84527 | opp_overlap 827102 TCCACACATCAAAAA CCTTTT ACC AAAAGG TGGATTCTTGTTGCA TERM 839 827768 - 827740 - gH 82 -3.1 -5.4505 | CTCCCCAATAAAAAA TGCCTGGGAACAC TAT GTATTATCAGACA GGCAAGCACTTCTTG TERM 840 828041 - 828053 + GH 79 -3.3 -5.28561 | overlap 828050 CTGCATCGCGGAGTG TCACC TGA GGAGA TTTTTATTCTCTCTT recC 827006 - 830080 + | exodeoxyribonuclease V, gamma TERM 841 830204 - 830167 - g 76 -10 -3.24076 | gap 1, opp_overlap 830193, overlap 830165 830163 830168 830202 TTACTATAGAACAGA TCGTGTT-GCGAGCCTT GATTG AAGGCTCGCTAACACAT GTAGAACATGCCTTA TERM 842 830203 - 830168 - g 91 -13.5 -2.53964 | gap 1, opp_overlap 830193, overlap 830167 830165 830163 830202 TACTATAGAACAGAT CGTGTT-GCGAGCCTT GATTG AAGGCTCGCTAACACA TGTAGAACATGCCTT TERM 843 831633 - 831617 - g 81 -5.1 -5.18715 | opp_overlap 831619, overlap 831619 ACAAAAAGAACAAAA GATTCCC CTA GGGAATA TGGTTGTCCTGGTCT TERM 844 831631 - 831619 - g 76 -7.7 -4.17151 | opp_overlap 831619, overlap 831617 AAAAAGAACAAAAGA TTCCC CTA GGGAA TATGGTTGTCCTGGT TERM 845 833128 - 833141 + G 70 -3.8 -4.81851 | opp_overlap 833128 TCCGTGGCATAGACA CCCA AGGAAA TGGG TTTTTCGCTTTAAAT recB 830067 - 833219 + | exodeoxyribonuclease V, beta CPj0739 834192 - 833179 - | hypothetical protein TERM 846 833262 - 833248 - G 100 -10 -4.68908 | GGGAGGTAAAATAAA GAGCTG ATC CAGCTC CATAAGCTTTTCTTC tyrB 835369 - 834182 - | aromatic amino acid aminotransferase TERM 847 834264 - 834286 + g 74 -7.7 -3.9644 | overlap 834266 AAATTCATTCTTCCT CCCGCTGTT GTATA AACAGCGTG TTGTTCTCTTAAAAA TERM 848 834266 - 834284 + g 73 -8.9 -3.56921 | overlap 834264 ATTCATTCTTCCTCC CGCTGTT GTATA AACAGCG TGTTGTTCTCTTAAA TERM 849 834375 - 834362 - G 71 -2.4 -5.18726 | TTGGGACAATAAAAA GTCA AATGTA TGAC CGGCAACCTTACGCA greA 837671 - 835503 - | fused transcript cleavage factor/uncharacterized domain-containing protein TERM 850 837418 - 837402 - G 71 -2.3 -5.21709 | opp_overlap 837402 GGCTATATCAAAAAA CATCT GGCTGTT AGATG TTTGCAAATCTAAAA CPj0742 837784 - 838212 + | hypothetical protein nqrA 838283 - 839686 + | Na(+)-translocating NADH-quinone reductase subunit A hemB 840705 - 839707 - | delta-aminolevulinic acid dehydratase CPj0745 841224 - 841060 - | hypothetical protein TERM 851 841175 - 841161 - G 71 -10 -2.57132 | overlap 841160 GCTTGGGGTCATAAG CGACGT TAT ACGTCG TGCTCCCCTGTAGGG CPj0746 841296 - 842891 + | hypothetical protein CPj0747B 843438 - 843127 - | hypothetical protein CPj0747A 843003 - 843188 + | hypothetical protein TERM 852 843330 - 843354 + gT 100 -15.9 -5.24531 | TCCAGATCTCTCTCG GGGATGAAGAT TTT ATCTTCATCCC TTTTTTATAAGAAAT ispA 844308 - 843439 - | geranyl transtransferase glmU 844950 - 844324 - | UDP-GlcNAc pyrophosphorylase tctD 845732 - 845025 - | HTH DNA-binding domain-containing protein TERM 853 845122 - 845141 + g 95 -5 -5.7946 | opp_overlap 845121 CGAATCGTTACAATT TTAGATCC GTAG GGACCTAA TTTTTTTCTTAAAGA TERM 854 845701 - 845689 - G 76 -7.7 -4.20025 | AATTGCGAAGATAAA CTGAG ATC CTCAG TAACAAACAATATGA TERM 855 846475 - 846493 + G 76 -10.4 -2.93335 | overlap 846474 AGTATTGAACAGCTG CTAACAGA TTT TCTGTTAG ATTATATTTCTGCGC CPj0751 845929 - 847758 + | hypothetical protein TERM 856 848014 - 848032 + G 70 -6 -4.29117 | overlap 848021 TGCTTCTAAGCACAT CTCTTCGG ACT TTGAAGAG TCTTTTGTTTTTCTC TERM 857 848021 - 848034 + G 79 -3.1 -5.35224 | overlap 848014 AAGCACATCTCTTCG GACTT TGAA GAGTC TTTTGTTTTTCTCGC TERM 858 848367 - 848406 + G 81 -5.3 -5.08824 | gap 2 AAATAACTCAAGGAT GTTTTTCTATAGTTTCTGG AGGC CCAGGAAC-A-GGAAAAAC TTTTTTAGCTGCACA TERM 859 848882 - 848892 + G 74 -4 -4.95155 | TCTGTATTGCGTGGC GAAA TGA TTTC TTTTTCTCCTCTCCC recD_2 847925 - 849406 + | exodeoxyribonuclease V, alpha TERM 860 849451 - 849428 - T 93 -5.2 -6.11229 | opp_overlap 849428 ATCAAAATAAAAAAA CCCTCAAAGA ATAC TCTAAGAGGG TTTTTTTGCTGCGAA TERM 861 849428 - 849451 + T 84 -5.2 -5.52384 | opp_overlap 849428 ATCAAAATAAAAAAA CCCTCAAAGA ATAC TCTAAGAGGG TTTTTTTGCTGCGAA CPj0753 850327 - 849479 - | hypothetical protein rpsT 850657 - 850358 - | 30S ribosomal protein S20 CPj0755 850918 - 852123 + | hypothetical protein TERM 862 852961 - 852976 + G 80 -9 -4.03167 | AGTGTCGTATTCGGA CGCAAG CCTA CTTGCG TTGTTTCCATTGTCG TERM 863 853130 - 853100 - g 74 -6.8 -4.38748 | opp_overlap 853099 853096, overlap 853097 853101 TGCAGAAAGAAATAA GTTTGCTGCTGCAA AGT TGGCAGCAGCTAAG CGTAAGTTGTATAAA TERM 864 853129 - 853101 - g 77 -10.3 -3.22164 | opp_overlap 853099 853096, overlap 853100 853097 GCAGAAAGAAATAAG TTTGCTGCTGCAA AGT TGGCAGCAGCTAA GCGTAAGTTGTATAA TERM 865 853755 - 853775 + G 81 -7.5 -4.7261 | opp_overlap 853746 853756, overlap 853756 AAAGAGGTCTTAAAG ACGCTTACG GAT CGTGAGCGA TTTGTTTTGATCCAT TERM 866 853774 - 853756 - g 71 -8.8 -3.36341 | opp_overlap 853756 853755 AAGAGGTCTTAAAGA CGCTTACG GAT CGTGAGCG ATTTGTTTTGATCCA TERM 867 853756 - 853774 + G 83 -11 -3.42481 | opp_overlap 853756, overlap 853755 AAGAGGTCTTAAAGA CGCTTACG GAT CGTGAGCG ATTTGTTTTGATCCA rpoD 852282 - 854000 + | RNA polymerase sigma factor TERM 868 854387 - 854372 - gf 71 -4 -4.89852 | gap 1 CTAGAGGTAGAAAAA GAAC-GG CCA CCTGTTC CCAACCTATTAAATC folX 854054 - 854458 + | dihydroneopterin aldolase folP 854431 - 855783 + | dihydropteroate synthase folA 855809 - 856321 + | dihydrofolate reductase CPj0760 856278 - 857018 + | hypothetical protein CPj0761 857025 - 857699 + | hypothetical protein TERM 869 857804 - 857765 - T 100 -18.8 -3.57792 | opp_overlap 857767 857770 857802, overlap 857767 857770 TCATGCATCTGTAAA CAGAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTCTT TGTCTCAAGGTAATT TERM 870 857767 - 857802 + T 100 -19.2 -4.04206 | opp_overlap 857765 857767 857770, overlap 857770 ATGCATCTGTAAACA GAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTC TTTGTCTCAAGGTAA TERM 871 857802 - 857767 - T 100 -21.4 -3.36694 | opp_overlap 857767 857770, overlap 857765 857770 ATGCATCTGTAAACA GAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTC TTTGTCTCAAGGTAA TERM 872 857770 - 857799 + T 100 -15.1 -4.14627 | opp_overlap 857770 857767 857765, overlap 857767 CATCTGTAAACAGAA TCCCCCCTCCTAA AGTA TTAGAAGGGGGGA TTCTTTGTCTCAAGG TERM 873 857799 - 857770 - T 100 -17.3 -3.82202 | opp_overlap 857767 857770, overlap 857767 857765 CATCTGTAAACAGAA TCCCCCCTCCTAA AGTA TTAGAAGGGGGGA TTCTTTGTCTCAAGG recA 858918 - 857857 - | recombinase A ygfA 859832 - 859290 - | formyltetrahydrofolate cycloligase TERM 874 859748 - 859726 - G 80 -9.1 -3.90856 | opp_overlap 859725 859722 859717 AAGCTGCGAACGAAA GAGGCCACT GCAGA AGAGGCCTC ATGCTTGCGTTCTTC CPj0764 861128 - 859842 - | hypothetical protein CPj0765 861703 - 861119 - | hypothetical protein CPj0766 863103 - 861712 - | hypothetical protein TERM 875 863415 - 863425 + G 75 -5.4 -4.90381 | GGTCTGCTTTGCCTT GGAA TCC TTCC TTTTGTTATATTAAG TERM 876 863456 - 863466 + G 70 -2.6 -4.93968 | AGTCCTACGTTTTAT TATT CTT AATA TTTTTCATTCTCCAT CPj0767 863205 - 863501 + | hypothetical protein TERM 877 864258 - 864240 - g 76 -6.8 -4.48741 | GAAGCTATGAGAAAA TTCCCTTT ATC AAAAGGAA AGCTGCGTTTCTGGA yohI 863480 - 864487 + | oxidoreductase topA 867054 - 864439 - | fused DNA topoisomerase I/SWI domain-containing protein TERM 878 864705 - 864717 + g 70 -2.7 -5.00884 | ATAAAGGACCTGTTT TCTTT TCT GAAGA TTTTTTAACCGAGCT TERM 879 866153 - 866165 + g 75 -9.1 -3.63627 | opp_overlap 866151 CTATCTAAATCGACG CCCTC ATA GAGGG TTTGCGCTATAGACA TERM 880 866316 - 866334 + g 71 -6.6 -4.20025 | opp_overlap 866316 AGGATTTCTCTAACA GCTCGGCA TAG TGACGGGC TTTCTCTTCAGAGTT TERM 881 866376 - 866387 + g 73 -5.8 -4.55697 | CATCATTTTCGGTTT TCCC TTCA GGGA TTTCTTTCTCCCACT CPj0770 867661 - 868455 + | hypothetical protein rpoN 869784 - 868462 - | RNA polymerase factor sigma-54 uvrD 871706 - 869787 - | DNA helicase TERM 882 870133 - 870150 + g 71 -4.2 -4.90079 | opp_overlap 870125 870133, overlap 870144 TCATCAAGGAAAAGT TCCAAA TGTGTC TTTGGA TTTTGTTGTTCGGAT ung 871809 - 872519 + | uracil-DNA glycosylase CPj0774 872516 - 872749 + | hypothetical protein yggV 873352 - 872732 - | putative deoxyribonucleotide triphosphate pyrophosphatase CPj0776 873567 - 874811 + | hypothetical protein TERM 883 875055 - 875045 - g 75 -3.2 -5.1675 | GTAGTCATCAAAAAA GGAA AAG CTCC TATTGTCTTAACGAA groEL 874922 - 876502 + | chaperonin GroEL ahpC 876826 - 877416 + | thio-specific antioxidant (TSA) peroxidase CPj0779 877802 - 877413 - | hypothetical protein amiB 878526 - 877909 - | N-acetylmuramoyl-L-Ala amidase pal 879094 - 878516 - | peptidoglycan-associated lipoprotein tolB 880386 - 879091 - | translocation protein TolB CPj0783 881206 - 880418 - | hypothetical protein TERM 884 880624 - 880663 + g 95 -11.6 -3.762 | overlap 880627 CATACCCTTTAGAGG GGAGAGCTATGTGAGT GCGAAATA ACTCACATAGCTCGTC TTCTTGAGTTGCTTT TERM 885 880627 - 880660 + g 95 -14.1 -2.66329 | overlap 880624 ACCCTTTAGAGGGGA GAGCTATGTGAGT GCGAAATA ACTCACATAGCTC GTCTTCTTGAGTTGC TERM 886 880728 - 880752 + g 100 -10.9 -4.56358 | GGCCAGGAGATATTT TTGAGAGAAGT TTC ACTTTTCTCAA TTTTATCTACATGTA exbD 881617 - 881210 - | biopolymer transport protein exbB 882312 - 881614 - | macromolecule transporter TERM 887 882977 - 882992 + G 74 -7.6 -3.99324 | opp_overlap 882977 ACACTGCCCTACGAA GAGAAG GAGC CTTCTC TTTATCCTGATACAC dsbD 882506 - 884617 + | thio:disulfide interchange protein TERM 888 884687 - 884704 + F 100 -12.7 -5.38054 | opp_overlap 884683 CCTTAAAAATTGTTA GGGCAGC ATAT GCTGCCC TTTTTATTTGTAACA TERM 889 885224 - 885207 - g 74 -6.9 -4.31293 | opp_overlap 885206 GCACATAGTAAGAAA CTCGCCG CAAT CGGAGAG GTCGGTTTAGATTAT TERM 890 885670 - 885660 - g 74 -6.8 -4.27316 | GTTGCCAATGTAAAA GGGA TGT TCCC ACAAGAGCTTGCAGC yabD 884940 - 885725 + | PHP superfamily (urease/pyrimidinase) hydrolase TERM 891 885728 - 885752 + F 75 -10.1 -2.5671 | overlap 885727 885726 TCTGCACGGTTAATT TGATGGAGTTC ATA GAACTCCATAA CCTTTCTATTTTGTC sdhC 885863 - 886756 + | succinate dehydrogenase sdhA 886760 - 888640 + | succinate dehydrogenase flavoprotein subunit sdhB 888651 - 889427 + | succinate dehydrogenase iron-sulfur subunit CPj0791 892371 - 889429 - | hypothetical protein TERM 892 890083 - 890069 - G 72 -7.2 -3.96148 | TGGTCGGAGCAGAAA TCATGA AAG TCATGA ACTACATGTTGCAAA TERM 893 891492 - 891526 + g 72 -9.4 -3.23449 | overlap 891490 TCTCATGGACATTTT GTAGTTTTTGCATCAA ATA TTGATGCGAGAGCAAC TGTTGGATTTGTGCT CPj0792 894240 - 892426 - | hypothetical protein TERM 894 892802 - 892820 + g 75 -3.1 -5.24129 | GTTTTTGAGAAGCTG TCGGCAG TATCC TTGCTGA TTTTTTGTAACGAAA TERM 895 893825 - 893836 + g 71 -2.2 -5.24551 | AAGGCTTTCCCTACA GCTG CGGA TAGC TTTTTCTTCATTTCA rbsU 896144 - 894237 - | sigma regulatory family protein - PP2C phosphatase TERM 896 894537 - 894517 - G 82 -10.5 -3.69434 | GGAAGGAAGCCTAAA GCCATTCCA GGA TGGAATAGC CAAGAAGTCTCGCCA TERM 897 895230 - 895268 + g 89 -7.3 -5.0538 | opp_overlap 895253, overlap 895233 895235 GAAATAGGCAGTGTA CATGCGAGCTCTGCGCC ATAAA GGCGCAAAGCTCTCTTC TTTTTTAGCATAGGA TERM 898 895233 - 895265 + g 100 -13.4 -4.63089 | opp_overlap 895253, overlap 895230 895235 ATAGGCAGTGTACAT GCGAGCTCTGCGCC ATAAA GGCGCAAAGCTCTC TTCTTTTTTAGCATA TERM 899 895235 - 895263 + g 100 -14.6 -3.91465 | opp_overlap 895253, overlap 895233 895230 AGGCAGTGTACATGC GAGCTCTGCGCC ATAAA GGCGCAAAGCTC TCTTCTTTTTTAGCA CPj0794 896495 - 897328 + | hypothetical protein TERM 900 897351 - 897365 + F 71 -6.4 -4.15788 | opp_overlap 897360 TAGGAGGGGCGAATT CTTCAG CAA CTGGAG TTTCTTCAGACGGTT CPj0795 897449 - 898519 + | hypothetical protein TERM 901 898611 - 898584 - f 100 -11.5 -4.76423 | opp_overlap 898584 GATAAACAGATAAAA TATAGCTCAGA ATATAA TCTGAGCTATA TTCTTCTTACTTGCA TERM 902 898584 - 898611 + F 93 -11.5 -4.0342 | opp_overlap 898584 GATAAACAGATAAAA TATAGCTCAGA ATATAA TCTGAGCTATA TTCTTCTTACTTGCA TERM 903 900049 - 900060 + G 70 -5.8 -4.4009 | opp_overlap 900048 GCAGAATCAGCAATT GCTC ACAG GAGC TTTTATGGACTGGAA CPj0796 898622 - 900664 + | hypothetical protein CPj0797 900921 - 902018 + | hypothetical protein TERM 904 902059 - 902089 + F 81 -7.9 -4.39133 | gap 1, opp_overlap 902069 AAGTAAATCGTAAGC TTGGAATTCATGAA GTGA TTCAT-AATTCCAA TTTTCATACTTGTTG CPj0798 902167 - 903180 + | hypothetical protein CPj0799 904307 - 903258 - | hypothetical protein eno 905853 - 904567 - | phosphopyruvate hydratase uvrB 908018 - 906045 - | excinuclease ABC subunit B trpS 909061 - 908027 - | tryptophanyl-tRNA synthetase CPj0803 909624 - 909070 - | hypothetical protein TERM 905 909122 - 909142 + g 70 -2.5 -4.96848 | TTTAATGATGTAATT TCTTCTTGA ATT TCCTGAAGA TTTTTCTCTCCAACA TERM 906 909652 - 909663 + r 71 -3 -5.14894 | opp_overlap 909652 TGTATCGGGAAAGAG GTTA CTTT TAAC TTTTTCTAGTTTTTT gp6D 910380 - 909628 - | CHLTR plasmid paralog TERM 907 909829 - 909845 + g 89 -6.5 -5.28942 | GAACTCTTTGCGAAT GCGATCT AAA AGCTCGC TTTTTCTTTCCCCTC minD 911152 - 910385 - | chromosome partitioning ATPase thrS 913092 - 911185 - | threonyl-tRNA synthetase TERM 908 913166 - 913185 + H 74 -2.2 -5.45813 | opp_overlap 913166, overlap 913168 913177 TGATCAAAGCAAGAA GCTTTTTT TTAT AAAAAAAC TTTTATTTTTTAATA TERM 909 913204 - 913185 - H 78 -2.2 -5.60993 | opp_overlap 913177 TTTTTTATAAAAAAA CTTTTATT TTTT AATACAAG TTCCAAAGCGCCAGG TERM 910 913489 - 913506 + G 79 -8.5 -4.2074 | ATTCTTATATATCGT CCTGTTA GCTT TAACAGG TTTCTATCTTACCAA CPj0807 913292 - 914203 + | hypothetical protein TERM 911 914228 - 914246 + T 100 -10.3 -5.52986 | opp_overlap 914228 GCTTTACATGAAAAA GCTCGGT ATCAA ACCGAGC TTTTTTTGATCAGAT TERM 912 914246 - 914228 - T 100 -10.3 -4.8048 | opp_overlap 914228 GCTTTACATGAAAAA GCTCGGT ATCAA ACCGAGC TTTTTTTGATCAGAT CPj0808 915608 - 914274 - | hypothetical protein TERM 913 915394 - 915407 + g 82 -2.4 -5.59357 | CTACTTTTAGTAGTT GAAG ATGTAG CTTC TTTTTTTCCTGTACT CPj0809 917107 - 915641 - | hypothetical protein TERM 914 916858 - 916890 + g 71 -4.1 -4.91109 | opp_overlap 916867 CTGAGGATTCTTTCC CAGCAGCAACTCC CTGTTGT GGAGCTGTTTCTG TTTTTGTAGTCGAGG CPj0810 917506 - 917144 - | hypothetical protein lcrH_1 918222 - 917527 - | low calcium response protein H TERM 915 917731 - 917759 + g 72 -9.8 -2.78384 | gap 1 GTTAGATTCTTCGGG TTGCTG-TAGCTT CAAT AAGCTATCAGCAA TGTAGTAAGGAGGAA TERM 916 918614 - 918638 + G 76 -10.9 -2.52464 | opp_overlap 918610, overlap 918617 918618 GAGGGGGACAAGGCG CAATCATTATC AGA GATAATGGTTG TGGCTTCAGAGCCGA TERM 917 919287 - 919297 + G 82 -6.8 -4.91109 | GCTTCTGCCTCTACA CAGG TAT CCTG TTTTTGTGCTGAAGC TERM 918 919827 - 919841 + G 95 -5.6 -5.60689 | overlap 919829 TCTACGCCTTCAGGT GACTCC TGA GGAGGC TTTTTTCTTCTCTCA TERM 919 919895 - 919912 + G 71 -4.9 -4.67943 | gap 1, opp_overlap 919895 919886 TAGGAATAGAAATAT CAC-AGGT AGG ACCTTGTG TTTTCTCTATTGAAA mutL 918445 - 920187 + | DNA mismatch repair protein TERM 920 921215 - 921205 - g 70 -2.6 -5.04597 | opp_overlap 921205 ATGTATAGATAAAAA TAAA AAT TTTA GTTTGACTGCACGTC pepP 920192 - 921259 + | aminopeptidase P TERM 921 921279 - 921299 + F 75 -4.9 -4.97405 | opp_overlap 921285, overlap 921253 AATTGGATTTAGTTT TTAAATTTA AAT TGAATTTAA TTTGTTTTTATAAAT TERM 922 921335 - 921347 + F 75 -4.9 -4.87389 | TTTTTTGTTTTTTAA GTTAT CTT ATAAC TTTATTTTTAACCTG TERM 923 921983 - 921971 - g 84 -6.3 -5.07652 | TCCTGTAAAACAAAA GATAC GTC GTATC GGTGTGGATAAGTTT TERM 924 922101 - 922113 + G 70 -7.7 -3.60098 | CGGTACCTTGCTGTT GGAGA TGT TCTCC TTTGGGATGGCAACT CPj0814 921429 - 922682 + | hypothetical protein TERM 925 923276 - 923292 + G 73 -2.9 -5.14563 | GATGCGTAAGGAGGG CTGCAGT GTT GCTGGAG TTTTTTCCTCCAGAA gspD 922683 - 924947 + | general secretion protein D gspE 924937 - 926427 + | genral secretion protein E TERM 926 926560 - 926544 - g 79 -8.1 -4.25104 | opp_overlap 926544 GCTCGCCCAGGAAAA TATCCAA GTT TTGGATA TTCGTGAGGTCGCCT gspF 926437 - 927612 + | general secretion protein F CPj0818 927636 - 928007 + | Omp CPj0819 928011 - 928457 + | hypothetical protein TERM 927 928487 - 928468 - g 78 -5.8 -4.76041 | gap 1, opp_overlap 928468 TATAGCTATGAAAAA GCA-AAAGC GTG GCTTTGTGC TTATGGAATTACTCA CPj0820 928442 - 928849 + | hypothetical protein CPj0821 928988 - 929992 + | hypothetical protein CPj0822 930077 - 930553 + | hypothetical protein TERM 928 930610 - 930572 - T 73 -8.3 -3.53224 | opp_overlap 930561 930572 930607 TACTTTTTCCCTAAA GGCAAAATGTTGAAG CCCTCCTTT CCTCAACTTTTTGCC TTGTTTTCAGGCATG yscT 931688 - 930819 - | YopT tranlocation T yscS 931983 - 931696 - | YopS translocation protein yscR 932915 - 931995 - | type III secretion system protein yscL 933631 - 932930 - | type III secretion system protein CPj0827 934585 - 933752 - | hypothetical protein yscJ 935592 - 934585 - | Yop translocation J TERM 929 934760 - 934773 + g 76 -6.7 -4.42653 | TTTGTATATGGTGTA GGGTT GAAG AACCC TTTTGTACCTCCCAT TERM 930 935389 - 935433 + g 70 -3.7 -4.82901 | gap 3, overlap 935401 CGCGATATCCCACAT TTGC-TCAGTAGCTGCTCCGGC TGTA GCCGCTGCAGCT--TGAGGCAA TTTTTGTGCAGCCAC CPj0829 936065 - 936622 + | hypothetical protein CPj0830 936765 - 937283 + | hypothetical protein TERM 931 937613 - 937603 - g 75 -5.4 -4.77165 | GTGCTTATAAGAAAA TCTG AAT CAGA AGGAGCTTTTTTTGA CPj0831 937588 - 937758 + | hypothetical protein lipA 939068 - 938145 - | lipoyl synthase lpdA 940450 - 939065 - | dihydrolipoamide dehydrogenase TERM 932 940692 - 940706 + H 77 -10 -2.99951 | overlap 940689 TTAATGGCATTTTAG CGACCT AAG AGGTCG TGATTTCATAATTGA TERM 933 940981 - 941002 + G 70 -3.6 -4.89477 | overlap 940982 CGCCTTTCTTCAAGA TCCTCCAG TAGCCT CAGGAGGG TTTTCTTCTTGCCAC CPj0834 940874 - 941338 + | hypothetical protein CPj0835 945010 - 941363 - | SWI/SNF family helicase_1 TERM 934 943060 - 943082 + g 71 -4.2 -4.89521 | opp_overlap 943061 943073, overlap 943061 TCTGCGTAGATAGGA ACTGTTTTAA AAA TTGAAACAGG TTTTGTTTCAAATCT TERM 935 943093 - 943073 - G 79 -7 -4.58283 | opp_overlap 943061 943060, overlap 943061 943082 GAACTGTTTTAAAAA TTGAAACA GGTTT TGTTTCAA ATCTAAAAAGCCAGC TERM 936 943312 - 943294 - G 70 -3.8 -4.87803 | GATTTGGAAATAAAA TACGCTCA TGC TGCGCATA CTGTGTAAGAAACTG brnQ 946200 - 945040 - | amino acid (branched) transport nth 947092 - 946463 - | endonuclease III TERM 937 946748 - 946732 - G 71 -2.3 -5.08601 | overlap 946704 CTATCCCAAGAAAAA CAGAA GCGGTTT TTCTG CCAACTCCCGGAAGT trmE 948427 - 947099 - | tRNA modification GTPase TrmE TERM 938 947983 - 947973 - G 71 -4 -4.83169 | ATTTTCTTAGAAAAA TTTC CTT GAAA ATGCGTTTGAGCAAT TERM 939 948836 - 948846 + G 81 -4 -5.40072 | GTTGCAGACTTCACC TCAT TTA ATGA TTTTTTTACCCGGAA psdD 948578 - 949483 + | phosphatidylserine decarboxylase TERM 940 949740 - 949726 - g 90 -5.6 -5.44119 | opp_overlap 949726, overlap 949728 CCTATTTTAAAAAAA CGGTCG TAT CGACGG CAGTGTTTATTTGAA TERM 941 950784 - 950800 + G 73 -7.3 -4.18018 | GGAGAAACAACGACG TTCGCAG ATT TTGCGAA TTTTACGTAAAAAAC CPj0840 949543 - 950868 + | hypothetical protein TERM 942 952432 - 952451 + G 70 -3.5 -4.83169 | opp_overlap 952427 952432, overlap 952430 GATGAACATACAGGA CGTCCTC AACCTG GACGACG TTTTTCTGAAGGCCT secA 951052 - 953964 + | preprotein translocase subunit SecA TERM 943 953997 - 953969 - T 100 -9.8 -4.33755 | gap 1, opp_overlap 953970 953972, overlap 953972 ATCAAGATTAAGAAA TAACCTAGAAGGA GGAG TCCTTCTAGGT-A TTTGTTTCACAGGCT TERM 944 953970 - 953997 + T 100 -11.4 -4.41616 | opp_overlap 953969 953972, overlap 953972 TCAAGATTAAGAAAT AACCTAGAAGGA GGAG TCCTTCTAGGTA TTTGTTTCACAGGCT TERM 945 953972 - 953995 + T 100 -14 -3.81557 | opp_overlap 953969 953972, overlap 953970 AAGATTAAGAAATAA CCTAGAAGGA GGAG TCCTTCTAGG TATTTGTTTCACAGG TERM 946 953995 - 953972 - T 100 -14 -4.26924 | opp_overlap 953972 953970, overlap 953969 AAGATTAAGAAATAA CCTAGAAGGA GGAG TCCTTCTAGG TATTTGTTTCACAGG CPj0842 954204 - 954028 - | hypothetical protein CPj0843 954512 - 954312 - | hypothetical protein engA 956051 - 954588 - | GTP-binding protein EngA TERM 947 955181 - 955169 - G 72 -6.3 -4.29106 | opp_overlap 955169 955168, overlap 955165 TTCGAGATGAAGAAA TCCAT TCT ATGGA ATTCTTAACGCTTTT TERM 948 955563 - 955575 + g 70 -7.7 -3.61652 | overlap 955560 955559 GCGAGGTTCTGGTAG GTTGG CTA CCAAC TTAATTCTTTGAAGA pcnB_1 957400 - 956168 - | poly A polymerase TERM 949 956648 - 956638 - G 71 -4 -4.8487 | opp_overlap 956638 GCAGTAAAAAAAGAA TTTC AGG GAAA TGTGTTGGATTAAAC TERM 950 956920 - 956910 - G 75 -3.2 -5.14163 | AGGGAGGAAGAAAAA CGTA TGG CACG TAGGATACGCAGTTT clpX 958695 - 957430 - | ATP-dependent protease ATP-binding subunit TERM 951 957576 - 957593 + g 78 -5.5 -4.93547 | TTTCTAGGATCATCC CTAGAGC ACGA GCTCCAG TTTTTGCTTGCTTGG TERM 952 957797 - 957818 + g 70 -8 -3.71649 | AATTCAGGGATCATT CCGAAGGC AATCAG GTCTTCGG TTTCAACTTTAGCAA TERM 953 958004 - 958024 + g 72 -7.6 -3.89302 | gap 1, overlap 957995 TGGTTAGGATGCTTA CGT-CCTCC TTTA GGAGGAACG TTTGCTGTGGTTCCT clpP 959316 - 958705 - | ATP-dependent Clp protease proteolytic subunit TERM 954 958970 - 958989 + g 72 -7.2 -3.95584 | gap 1 ATCATACGGCTATGG GGAAGAGCG TGA CGCT-TTCC TTTAGTTCCTGCGGA tig 960823 - 959495 - | trigger factor TERM 955 960015 - 960031 + g 71 -4.4 -4.79826 | overlap 960024 TCGTCTAGAGATTCT GCTTGT AGTTG ACGAGC TTTTTCGTCATCTAT TERM 956 960673 - 960685 + g 76 -2.7 -5.38348 | CTTTGCGGAATCCTG GAAGT GTA ATTTC TTTTTTAATCTTTTT TERM 957 962719 - 962743 + G 81 -7.1 -4.59342 | TCGCATTACTTTTAA CTGTCCGGAAA ATC TTTCAGGTCAG TTTATTTATGATGAG TERM 958 963007 - 962991 - g 75 -2.1 -5.29782 | opp_overlap 962991 962992, overlap 962992 TAGACTTAGAAAAAA TTGCTCC TGT GGTGCAG ATTTTTAATGAAATA CPj0849 961109 - 964609 + | SWI/SNF family helicase_2 mreB 964614 - 965714 + | rod shape protein-sugar kinase TERM 959 966028 - 966038 + G 75 -5.4 -4.76041 | AGAGATGCGTAGGGA GTTG CAT CAAC TTTTTCGTGGATGTA TERM 960 966201 - 966229 + G 71 -8.3 -3.43109 | overlap 966210 ATGATGTTTTACGTT CTTTAGGGACTTC GGG GAAGTTTTTAAAG TGTTTACATAGTGTG TERM 961 966210 - 966220 + G 73 -5.4 -4.6856 | overlap 966201 TACGTTCTTTAGGGA CTTC GGG GAAG TTTTTAAAGTGTTTA TERM 962 966565 - 966551 - g 71 -8.6 -3.57263 | opp_overlap 966550 ATGTTGATGCCTAAA CTTCCA GGT TGGAAG ATTGAGTGTATTGGG TERM 963 966634 - 966646 + G 79 -3.4 -5.28683 | opp_overlap 966634 GTTGTATGCTGTAAA TCCA GAATA TGGA TTTTTTGGTGTTGCT pckA 965717 - 967519 + | phosphoenolpyruvate carboxykinase CPj0852 967637 - 969937 + | hypothetical protein CPj0853 969958 - 971127 + | hypothetical protein ompB 972158 - 971124 - | outer membrane protein B TERM 964 971251 - 971289 + g 73 -7.1 -4.23007 | gap 1, opp_overlap 971264 971279, overlap 971256 971279 ACTCTGTCGAAGTTT GTGATTTTACGAATTTTA AATT TAAAATTCGT-AAATTGC TTTTCGAGTTCTGTG TERM 965 971256 - 971285 + g 100 -12.5 -3.69437 | opp_overlap 971264 971279, overlap 971251 971279 GTCGAAGTTTGTGAT TTTACGAATTTTA AATT TAAAATTCGTAAA TTGCTTTTCGAGTTC gpsA 973316 - 972312 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CPj0856 974698 - 973313 - | UDP-glucose pyrophosphorylase TERM 966 973538 - 973560 + g 70 -7.8 -3.58343 | opp_overlap 973538, overlap 973526 TAGGGGAGCAAAGCA CTCTTGTCTA GGA TACACAAGAG TTTGACAATGGTCGC TERM 967 974175 - 974151 - G 95 -8 -5.24129 | gap 1 GGTTGGCAGAAAAAA TCCACCT-GAT TTGG ATCTAGGTGGA AGTAGTCGTTGGATT CPj0857 975078 - 974710 - | hypothetical protein TERM 968 974831 - 974818 - G 71 -6.7 -4.18488 | opp_overlap 974811 974818 ATGGATTTCAAGAAA GCGAA GAGA TTCGC TCTGTTGTTTATAAA fliI 976376 - 975075 - | type III secretion system ATPase CPj0859 976909 - 976373 - | hypothetical protein fliF 977951 - 976926 - | type III secretion system protein TERM 969 977382 - 977412 + g 100 -13.4 -3.23853 | overlap 977380 CTGTAATGTGGGCTT CTCTGCTTTTGCGT GAT ACGCAAGAGCAAAG TGTTCCTTGGGGAAA TERM 970 977415 - 977442 + g 95 -9.2 -4.53163 | overlap 977418 977424 CGCAAGAGCAAAGTG TTCCTTGGGGAA AATT TTCCCCAGGTAA TTTTCTAATGTATGG TERM 971 977418 - 977439 + g 79 -10.9 -3.21099 | overlap 977415 977424 AAGAGCAAAGTGTTC CTTGGGGAA AATT TTCCCCAGG TAATTTTCTAATGTA CPj0861 979043 - 978243 - | NifU-related protein yfhO_2 980194 - 979040 - | NifS-related aminotransferase pgmA 980835 - 980149 - | phosphoglyceromutase yjbC 980991 - 981698 + | pseudouridine synthase CPj0865 981739 - 982266 + | hypothetical protein birA 982812 - 982234 - | biotin--protein ligase rodA 982744 - 983991 + | rod shape protein zntA 985964 - 983988 - | metal transport P-type ATPase TERM 972 984135 - 984151 + g 70 -3.7 -4.88646 | TAGTGCAAGGTTCTG CGAAACA ACT TTTTTCG TTTGTTTTGCTTTTT TERM 973 985749 - 985737 - G 80 -2.7 -5.5112 | GCCAGCAAGAAAAAA TGTAA ATA CTACA AATAAGTTAGAGAGA CPj0869 986722 - 985976 - | hypothetical protein TERM 974 986619 - 986609 - G 71 -3.2 -5.00642 | opp_overlap 986618 TAAGTGATAGAAAAA CCCT TTA AAGG TTGTATGGGGCTCCC serS 988049 - 986766 - | seryl-tRNA synthetase ribD 988093 - 989223 + | riboflavin deaminase ribA_ribB 989284 - 990540 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein TERM 975 990644 - 990663 + G 73 -2.8 -5.12707 | opp_overlap 990626, overlap 990645 ATGGCTGATGCCCTA GTTTCTGG TACT CAGGAAAC TTTTTTGAAGTTTGG ribH 990554 - 991018 + | riboflavin synthase subunit beta TERM 976 991038 - 991058 + T 95 -14.1 -3.29325 | opp_overlap 991035 991032 991031, overlap 991036 TGTAAGAACGTATAC GTCCCACAA AAT TTGTGGGAC TCTTCCTTCTACAGA CPj0874 992428 - 991067 - | hypothetical protein CPj0875 992693 - 993346 + | hypothetical protein TERM 977 993364 - 993411 + F 71 -3.3 -5.19879 | opp_overlap 993367 993371, overlap 993366 993399 TTCTAAAGCTCTCTA CAACTAAGCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGCCCAGAAG TTTTTCTCTTTGGCC TERM 978 993408 - 993367 - f 91 -12.4 -3.30635 | opp_overlap 993366 993364 993399, overlap 993371 TAAAGCTCTCTACAA CTAAGCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGCCCAG AAGTTTTTCTCTTTG TERM 979 993404 - 993371 - f 90 -11.8 -3.44146 | opp_overlap 993366 993364 993399, overlap 993367 GCTCTCTACAACTAA GCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGC CCAGAAGTTTTTCTC TERM 980 993581 - 993599 + G 78 -10.4 -3.27476 | TTTACAGTTCCACGG GTTAAAGC TCG GCTTTAAC TTGATGCTTCAAAAT TERM 981 994692 - 994702 + G 71 -3.2 -4.95758 | ATGATTTGGGCCTTA TCTG ACA CAGG TTTTTCTGGTATGGT dagA_2 993465 - 994841 + | D-alanine/glycine permease ybcL 994854 - 995306 + | hypothetical protein TERM 982 995333 - 995306 - T 87 -13 -2.81535 | opp_overlap 995309, overlap 995302 995309 TTACGAGAAAAGTTA GAATTTATTCCT CTTC AGGAATAAATTC CTCTCGCTTCTTCCT TERM 983 995309 - 995330 + T 73 -8.9 -3.30854 | opp_overlap 995306 995302 995309 CGAGAAAAGTTAGAA TTTATTCCT CTTC AGGAATAAA TTCCTCTCGCTTCTT TERM 984 995330 - 995309 - T 77 -8.9 -3.543 | opp_overlap 995309, overlap 995306 995302 CGAGAAAAGTTAGAA TTTATTCCT CTTC AGGAATAAA TTCCTCTCGCTTCTT CPj0878 995975 - 995310 - | SET domain-containing protein yycJ 996760 - 995963 - | metal dependent hydrolase TERM 985 996397 - 996381 - G 76 -2.9 -5.34655 | TAATGAAAAATAAAA GCCACAG GAT CTACAGC ATCATGAGGTACATT ftsK 999182 - 996762 - | cell division protein ftsK TERM 986 997904 - 997879 - G 72 -6.1 -4.26344 | overlap 997863 ACAGCTTGAGGAAAA GGTGTGGGAAT TTCA ATACCCACAGC AGCTTTCCCCGGAAT TERM 987 998595 - 998575 - G 71 -3.3 -5.03145 | overlap 998578 CAAGTTTGGAAAAAA GAGCAAAAA GCC TTTTTGACC CCGTCTTGAAAGGTT TERM 988 998837 - 998821 - G 73 -7.3 -4.20516 | CGTGTATCTAATAAA GCAGGAA GCG TTCCTAC TGGAGATAACATGGA TERM 989 999137 - 999115 - G 73 -5.6 -4.56642 | overlap 999116 AAAAATAAATATAAA CTGGCTTTAG CTG CTAAAGGCAA AGTCGGAAGACGAGG TERM 990 1001419 - 1001400 - H 72 -9.2 -2.65808 | opp_overlap 1001415, overlap 1001396 1001397 AGTCGTAACAAGGTA GCCCTACC GGAA GGTGGGGC TGGATCACCTCCTTT TERM 991 1001465 - 1001449 - H 79 -9.5 -3.5002 | overlap 1001445 1001464 TTTAAGGACAAGGAA GGTTGTT TTT AACAACC CGACTAGGTTGGGCA TERM 992 1001792 - 1001810 + H 79 -10.4 -2.81207 | overlap 1001791 1001794 CGAATGGGGCAACCC GATAGACT AAT AGTCTATC ATTATATGTTGAATA TERM 993 1001951 - 1001935 - H 73 -8.1 -3.66803 | opp_overlap 1001934 GGGGAACAGCCTAAA CCATATT TTT AATATGG GGTTGTAGGGTCGAT TERM 994 1002193 - 1002181 - H 78 -7.7 -4.2354 | GAAAGGTGAAAAGAA CCCTT GTT AAGGG AGTGAAATAGAACCT TERM 995 1004892 - 1004872 - H 81 -8.4 -4.24123 | opp_overlap 1004872 TTAAGAATTTCAAAA GAGGATAA TTTTT TTATCCTC TTTTTTTTTGCTGTT TERM 996 1004872 - 1004892 + H 100 -8.4 -6.21477 | opp_overlap 1004872 TTAAGAATTTCAAAA GAGGATAA TTTTT TTATCCTC TTTTTTTTTGCTGTT CPj0881 1004988 - 1005533 + | hypothetical protein CPj0882 1005589 - 1006728 + | hypothetical protein nqr6 1008186 - 1006891 - | Na(+)-translocating NADH-quinone reductase subunit F TERM 997 1008304 - 1008283 - R 100 -13.1 -4.60258 | CCATTAAATAAGAAA TCCCACGAT TTTA ATCGTGGGA TGAAAGTCTCAAAAG yajC 1008680 - 1008327 - | preprotein translocase subunit YajC ygcA 1009956 - 1008751 - | rRNA methyltransferse TERM 998 1009857 - 1009867 + g 79 -3.2 -5.27335 | overlap 1009854 CGAATAACTGATGAA GGAG TTC TTCC TTTTTCTTTAAGGAG TERM 999 1010201 - 1010174 - R 95 -8.5 -5.24129 | TTTGGGCATAAAAAA GAGGATGAGTA GAAAAT TACCCACCCTC TAAACGAAATCAAGC hctA 1010597 - 1010226 - | histone-like developmental protein TERM 1000 1010302 - 1010341 + g 84 -3.7 -5.41746 | GATGCAGGTTTAGAA GCTTTGACTGCTTT-GCTA GTTT TAGCTGCAGCAG-CAGAGC TTTTTTTAGGGGCTT TERM 1001 1010538 - 1010564 + g 75 -5.8 -4.59251 | opp_overlap 1010538, overlap 1010540 CTCTGCTTTAGCTAA GTCGTGTTGGAT GCT ATCCAGCAGGTC TTTCATTTTTTTTGC TERM 1002 1011465 - 1011478 + G 79 -6.7 -4.64766 | opp_overlap 1011460, overlap 1011460 CTGTCACGAATCTTT GCAAG ATCA CTTGC TTTTTGAGCTCTACA TERM 1003 1011670 - 1011656 - g 78 -2.2 -5.56264 | overlap 1011657 1011658 TGCAAATAGAAAAAA CTTTTT TGC AAAAAA CACTGCTTGCTTTGC TERM 1004 1012056 - 1012068 + G 82 -4.8 -5.28176 | TGAGCATCCCTATTT CCCA GAATA TGGG TTTTTTCTAGGTGCA CPj0887 1011013 - 1013481 + | CHLTR phosphoprotein hemG 1014744 - 1013437 - | protoporphyrinogen oxidase TERM 1005 1013879 - 1013863 - G 79 -8 -4.27316 | TTTGGGAAGCGAAAA GTTGGC GTGAT GCCAAC CTAAGCTGATGCTAG TERM 1006 1014622 - 1014642 + g 86 -9.7 -4.03234 | opp_overlap 1014625, overlap 1014625 GGATTCCGTGCGGAC GAAGCCTCC TGC GTAGGCTTC TTTATCTAAAACAAG hemN_2 1016156 - 1014780 - | coproporphyrinogen III oxidase hemE 1017126 - 1016137 - | uroporphyrinogen decarboxylase TERM 1007 1016565 - 1016553 - G 100 -9.1 -4.74706 | opp_overlap 1016563, overlap 1016564 TCGAAGATTCAAAAA GCTGC ACA GCAGC AGCTCCTGCATCCAT TERM 1008 1016906 - 1016894 - G 79 -7.7 -4.35116 | overlap 1016897 TAGGTCACAGCAAAA CCATC CAA GATGG ATAGGATATCAGCAA mfd 1020394 - 1017137 - | transcription-repair coupling TERM 1009 1017564 - 1017574 + gr 100 -6.8 -5.5943 | opp_overlap 1017564 GTGTGTTTTTTTAAA GCTG AAA CAGC TTTTTTTAGTAATTT TERM 1010 1017739 - 1017720 - GR 80 -9.3 -3.64703 | opp_overlap 1017704 TCCTGCTTATTTAAA GCAGCGA GTCGCT TCGCTGC TGGCCCAGACAACCT TERM 1011 1018424 - 1018435 + gr 70 -4.4 -4.70879 | TCCTGAAGCTACTTG CTCA CAGA TGAG TTTTTGCACTTTGGC TERM 1012 1019123 - 1019101 - GR 78 -4.3 -5.10208 | gap 1, opp_overlap 1019109, overlap 1019103 GAATCGGAACAAAAA CTTCTTCAGT AGTC ACTGAA-AAG TGAGTGCGTTGTTTT alaS 1022982 - 1020364 - | alanyl-tRNA synthetase TERM 1013 1020574 - 1020596 + gH 81 -9.3 -3.88001 | AATATATTTCCCATT TTTCTCTGT TGTCC ACAGAGAAA TTAGTTTTTCTGGAA TERM 1014 1020734 - 1020746 + gH 73 -7.7 -3.82519 | overlap 1020732 AACTTGTCTAATTTT GTCTG AAT CAGAC TGTTTTCTAACTCAT TERM 1015 1022690 - 1022645 - GH 70 -5.6 -4.38876 | gap 2, opp_overlap 1022657 TTAAAAACAGATAAA GAGACTTCCC-AA-GCAAAGGC AATC GCCTCTGCTTTAAAGTAGTCTC CGAAAGAAAAATTCC TERM 1016 1022657 - 1022676 + gH 71 -7.8 -3.63068 | opp_overlap 1022645 AAAGAGACTTCCCAA GCAAAGGC AATC GCCTCTGC TTTAAAGTAGTCTCC TERM 1017 1023425 - 1023441 + G 73 -8.7 -3.45756 | overlap 1023423 CGGTTTGTCTTGTCA GCAGGTC ATG GATCTGC TCTTCTCTATTCTTG tktB_1 1023215 - 1025212 + | transketolase amn 1026087 - 1025206 - | AMP nucleosidase TERM 1018 1025518 - 1025508 - G 73 -5.4 -4.7254 | opp_overlap 1025508 ATCCGGCAGCAAAAA GTGT CGC ACAC TCCATTTCAGCGGAT efp_2 1026309 - 1026881 + | elongation factor P TERM 1019 1026895 - 1026906 + F 71 -3 -5.05782 | AGATTGCCGTTGTAG GAAA AGTA TTTC TTTTTTACAGTGCGT TERM 1020 1027028 - 1027014 - g 70 -5.7 -4.25256 | opp_overlap 1027013 1027024, overlap 1027024 TCTTGATGAAAAGAA CAAGC GCAAA GCTTG GGTTGCTAAGCTTGT CPj0896 1026916 - 1027146 + | hypothetical protein CPj0897 1028058 - 1027171 - | phosphohydrolase groEL_3 1029781 - 1028222 - | heat shock protein-60 TERM 1021 1028984 - 1029001 + g 79 -8.5 -4.15044 | GGTGACTACAGTTAC TTGCAAG AGCC CTTGCAA TTTGTTAACAACAAG TERM 1022 1030907 - 1030917 + G 85 -4 -5.45802 | TGTTCTCCTACTGCC GAAA AAT TTTC TTTTTCTTTTAACGA murF 1030196 - 1031539 + | muramoyl-DAP ligase mraY 1031556 - 1032605 + | phospho-N-acetylmuramoyl-pentapeptide-transferase murD 1032608 - 1033861 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase nlpD 1033864 - 1034565 + | muramidase ftsW 1034584 - 1035741 + | cell division protein ftsW murG 1035647 - 1036720 + | N-acetylglucosaminyl transferase TERM 1023 1036697 - 1036714 + F 75 -8.5 -3.45536 | ACAAAAACATTCCAT GCATTCA TTTG TGAATGC TTATAGGTTCATTAT TERM 1024 1037753 - 1037771 + G 78 -7.4 -4.57073 | CGTGATGCTGTGGGT TTGCGAAG AGT CATCGCAA TTTTTCAACCACATC TERM 1025 1037989 - 1037973 - g 71 -9.5 -2.91264 | TTCCCCATGGAGACA TCGTAGA TTA TCTACGA AACTACATTCGCATT murC_ddlA 1036730 - 1039159 + | muramate-Ala ligase/D-Ala-D-Ala ligase TERM 1026 1039168 - 1039195 + T 74 -5.7 -4.70659 | opp_overlap 1039168 AAGATAATAAAAAAA CTAGAGATCTT TTTATT AAAATCTCTAG TTTTTACATGTAAAC TERM 1027 1039195 - 1039168 - T 100 -7.9 -5.94214 | opp_overlap 1039168 AAGATAATAAAAAAA CTAGAGATCTT TTTATT AAAATCTCTAG TTTTTACATGTAAAC CPj0906 1039661 - 1039233 - | hypothetical protein TERM 1028 1039710 - 1039699 - R 93 -3 -6.04953 | opp_overlap 1039699 ATAGAAAGAAAAAAA CATA ACTC TATG TTTTTAAAGTTCCTG cutA 1040101 - 1039763 - | periplasmic divalent cation tolerance protein CPj0908 1040910 - 1040098 - | hypothetical protein TERM 1029 1040422 - 1040406 - G 82 -2.3 -5.71712 | CTTGAGAGAAAAAAA TCTGA GGGAGAT TCAGA GAGGGGAAGTACGGT rsbV_2 1040958 - 1041290 + | sigma regulatory factor miaA 1041300 - 1042328 + | tRNA delta(2)-isopentenylpyrophosphate transferase CPj0911 1043364 - 1042303 - | hypothetical protein TERM 1030 1042785 - 1042771 - G 78 -10 -3.53012 | opp_overlap 1042771 1042767 TGCTGTTGTGCGAAA GCCCAT GAG ATGGGC TAACTTATGTAGATT TERM 1031 1042771 - 1042785 + g 71 -10 -2.63823 | opp_overlap 1042771, overlap 1042767 TGCTGTTGTGCGAAA GCCCAT GAG ATGGGC TAACTTATGTAGATT TERM 1032 1042803 - 1042820 + g 95 -5.5 -5.75342 | overlap 1042805 ACTTATGTAGATTGA TCCAGCC CCCA GGCTGCA TTTTTTTTGGAGAGA CPj0912 1043450 - 1045111 + | hypothetical protein CPj0913 1045108 - 1045296 + | hypothetical protein CPj0914 1045347 - 1045748 + | hypothetical protein TERM 1033 1045882 - 1045902 + G 70 -7.7 -3.63968 | overlap 1045877 AAGGGAATAATCTGG TTGTTCTAG ATG TTAGAACAA TTTCGGAATTTACCG ybeB 1045809 - 1046168 + | iojap superfamily protein fabF 1046185 - 1047435 + | 3-oxoacyl-(acyl carrier protein) synthase II CPj0917 1047438 - 1047890 + | hydrolase/phosphatase-like protein TERM 1034 1047887 - 1047927 + T 87 -11.3 -3.17392 | opp_overlap 1047901, overlap 1047892 CTATCTTTTCTCTTC TTGATTTTCAAGGAGAGGG AAC CCCTCTCCTTAGACATTAA TTCACTTCAGCAGTG TERM 1035 1047892 - 1047923 + T 87 -11 -3.4052 | gap 1, opp_overlap 1047901, overlap 1047887 TTTTCTCTTCTTGAT TTTC-AAGGAGAGGG AAC CCCTCTCCTTAGACA TTAATTCACTTCAGC TERM 1036 1047913 - 1047901 - T 72 -9.1 -2.72344 | opp_overlap 1047892 1047887 CTTGATTTTCAAGGA GAGGG AAC CCCTC TCCTTAGACATTAAT ppa 1048571 - 1047924 - | inorganic pyrophosphatase TERM 1037 1048243 - 1048257 + g 84 -2.8 -5.71712 | opp_overlap 1048243, overlap 1048245 GCTTGAAGTAAAATA TTTCCA TGA TGGATA TTTTTTTCTGTAAGA TERM 1038 1048245 - 1048255 + g 70 -5.4 -4.50122 | opp_overlap 1048243, overlap 1048243 TTGAAGTAAAATATT TCCA TGA TGGA TATTTTTTTCTGTAA TERM 1039 1049373 - 1049348 - g 70 -7.5 -3.86897 | opp_overlap 1049350 CTGATGTTTTAGAAA GAGCCGTTCAG GATG CTGCAAGGCTC TATGGGGCTACGATT ldh 1048726 - 1049781 + | leucine dehydrogenase cysQ 1050753 - 1049776 - | sulfite synthesis/biphosphate phosphatase CPj0921 1050883 - 1051644 + | snglycerol-3-P acyltransferase TERM 1040 1052920 - 1052939 + G 71 -5 -4.58395 | GAGATTTGGGTCATA TAGGTCCT AGCG GGGATCTA TTTTTAGAAGGTAGG aas 1051662 - 1053278 + | long chain fatty acid--[acyl-carrier-protein] ligase TERM 1041 1053458 - 1053470 + GT 72 -9.1 -2.62653 | opp_overlap 1053457 1053458, overlap 1053457 1053465 1053466 TTTCCTCATGAGAAG CTCGG GAT CCGAG GTTCTCGGCTTATGG TERM 1042 1053470 - 1053458 - gT 72 -9.1 -2.64099 | opp_overlap 1053458 1053457 1053465 1053466, overlap 1053457 TTTCCTCATGAGAAG CTCGG GAT CCGAG GTTCTCGGCTTATGG TERM 1043 1053466 - 1053478 + GT 72 -9.1 -2.64218 | opp_overlap 1053458 1053457, overlap 1053458 1053457 1053465 TGAGAAGCTCGGGAT CCGAG GTT CTCGG CTTATGGTAGGGCCT priA 1056622 - 1054373 - | primosome assembly protein PriA bioF_1 1053332 - 1054444 + | 8-amino-7-oxononanoate synthase CPj0925 1057248 - 1056571 - | hypothetical protein TERM 1044 1057316 - 1057333 + H 71 -5.7 -4.4767 | opp_overlap 1057319 AGAGCTCTCTGTGGA TAAGAAT TTCT ATTCTTA TTTTATCCTAAATCA CPj0926 1057408 - 1057908 + | thioredoxin disulfide isomerase CPj0927 1059157 - 1058015 - | CHLPS 43 kDa protein homolog_2 TERM 1045 1058185 - 1058195 + g 75 -5.4 -4.78848 | overlap 1058182 GCTCTAGAAAAGGTG TTGC TAC GCAA TTTTCTCTTTCGAAG CPj0928 1060356 - 1059229 - | CHLPS 43 kDa protein homolog_3 TERM 1046 1060554 - 1060571 + r 78 -6.9 -4.29302 | overlap 1060556 1060560 GCTTTTTCAAAATTG GTGTGGC AAGA GCCACTC TTGTTTTGCTGTCGA CPj0929 1061640 - 1060531 - | CHLPS 43 kDa protein homolog_4 TERM 1047 1060556 - 1060569 + g 72 -8.1 -3.74088 | overlap 1060554 1060560 TTTTTCAAAATTGGT GTGGC AAGA GCCAC TCTTGTTTTGCTGTC TERM 1048 1060560 - 1060574 + g 82 -8.6 -4.3586 | overlap 1060556 1060554 TCAAAATTGGTGTGG CAAGAG CCA CTCTTG TTTTGCTGTCGATGG TERM 1049 1061138 - 1061119 - G 79 -10.8 -3.14211 | opp_overlap 1061128, overlap 1061128 ATTGGCCCCTATCAA CTTGGCAA ATCT TTGCCAAG AATCAAAGATCTCCT TERM 1050 1061769 - 1061788 + H 84 -6.4 -5.09762 | overlap 1061771 CAGGCTTCAATGTCT GTCCACAA AAGT TTGTGGTC TTTTCTTTATTGCCA TERM 1051 1061771 - 1061786 + H 78 -7.6 -4.16668 | overlap 1061769 GGCTTCAATGTCTGT CCACAA AAGT TTGTGG TCTTTTCTTTATTGC CPj0930 1062206 - 1062682 + | hypothetical protein TERM 1052 1062913 - 1062931 + F 73 -9 -3.26719 | overlap 1062916 CTTCTGGCTATACGG GAATGTTT TTC AAACATTC TTAAGTCTTTGTCCG TERM 1053 1064260 - 1064250 - g 73 -5.4 -4.63218 | opp_overlap 1064256 1064258 1064259 TCGCTTTGAAGAAAA TCCT AGT AGGA GGAGCTCCTCGTATT lysS 1063487 - 1065070 + | lysyl-tRNA synthetase cysS 1066491 - 1065067 - | cysteinyl-tRNA synthetase TERM 1054 1066502 - 1066516 + rH 76 -6.4 -4.55093 | opp_overlap 1066494 GCCATAACTGTATCA CTCTTG ACT CAGGAG TTTGTTGTTATATAG TERM 1055 1067038 - 1067073 + Gr 82 -4.8 -5.37345 | gap 1, opp_overlap 1067042 1067044, overlap 1067041 1067044 ATCAGGAGGCTTTGC AAAAGAGCAA-GGAAGC AGA GCTTCCTTTGCTTGTTA TTTTTTCTGGTTCCG TERM 1056 1067041 - 1067070 + Gr 80 -6.5 -4.75967 | gap 1, opp_overlap 1067042 1067044, overlap 1067038 1067044 AGGAGGCTTTGCAAA AGAGCAA-GGAAGC AGA GCTTCCTTTGCTTG TTATTTTTTCTGGTT TERM 1057 1067069 - 1067042 - gR 76 -7.8 -4.08216 | gap 1, opp_overlap 1067041 1067038 1067044, overlap 1067044 GGAGGCTTTGCAAAA GAGCAA-GGAAGC AGA GCTTCCTTTGCTT GTTATTTTTTCTGGT TERM 1058 1067067 - 1067044 - gR 86 -10.4 -3.63922 | gap 1, opp_overlap 1067041 1067038 1067044, overlap 1067042 AGGCTTTGCAAAAGA GCAA-GGAAGC AGA GCTTCCTTTGC TTGTTATTTTTTCTG TERM 1059 1067044 - 1067067 + Gr 100 -10.4 -4.44307 | gap 1, opp_overlap 1067044 1067042, overlap 1067041 1067038 AGGCTTTGCAAAAGA GCAA-GGAAGC AGA GCTTCCTTTGC TTGTTATTTTTTCTG rnpA 1068291 - 1067872 - | ribonuclease P CPj0933 1066884 - 1067930 + | disulfide bond isomerase rpmH 1068440 - 1068303 - | 50S ribosomal protein L34 rpmJ 1068685 - 1068822 + | 50S ribosomal protein L36 rpsN 1068845 - 1069150 + | 30S ribosomal protein S14 CPj0938 1069671 - 1069195 - | hypothetical protein CPj0939 1070077 - 1070547 + | hypothetical protein uvrC 1072361 - 1070550 - | excinuclease ABC subunit C mutS 1074850 - 1072364 - | DNA mismatch repair protein TERM 1060 1072489 - 1072475 - G 70 -7.1 -3.75418 | CACACAAAGGGGAAA GCCAG CAAGC CTGGC GACATGAATGCCGAA TERM 1061 1072557 - 1072546 - G 78 -5.8 -4.84311 | opp_overlap 1072546 1072545 TCTCATATAAGAAAA CAGG CTGC CCTG CTTTATCTTTAACTC TERM 1062 1073793 - 1073811 + g 73 -5.3 -4.64361 | opp_overlap 1073793 AGTCGTTCGATATCA CGTACTT GACAA AGGTACG TTTTGATATTTTTTC TERM 1063 1074539 - 1074555 + g 89 -3.5 -5.62219 | opp_overlap 1074537, overlap 1074540 AAATCTCTGAATATC CCGGGCC ATG GGACCGA TTTTTTTACTCTCTT TERM 1064 1075880 - 1075868 - g 74 -7.7 -4.03219 | opp_overlap 1075868 1075867 ATCTCACAAGAACAA CTGCA TAC TGCAG GGTTTTTTGGGAATA TERM 1065 1075962 - 1075975 + G 70 -5.3 -4.57569 | GACATACCATTGGAT TTTCC GCTA GGAAA TTTTTAGAAAACTCC TERM 1066 1076692 - 1076702 + G 79 -3.2 -5.28176 | GGAAACAGATATCTT GCGT TGT ATGC TTTTTTGTGGATCCA dnaG 1075334 - 1077106 + | DNA primase TERM 1067 1077115 - 1077129 + F 72 -5.8 -4.36508 | TCCTTAACCCAGCTC TTCTTT TGT AAAGAA TTCTTGTTTTTCTAA CPj0943 1077327 - 1077590 + | hypothetical protein CPj0944 1077861 - 1078349 + | hypothetical protein CPj0945 1078419 - 1079012 + | hypothetical protein TERM 1068 1079035 - 1079070 + T 100 -20.6 -4.08939 | opp_overlap 1079020 1079035 1079039, overlap 1079039 CTTCCCTTAATAAAA GAAAGCGCTCGTAGGA TTCC TCCCACGAGCGCTTTC TTTATCTAAATGTTA TERM 1069 1079070 - 1079035 - T 100 -22.8 -4.63218 | opp_overlap 1079035 1079039, overlap 1079020 1079039 CTTCCCTTAATAAAA GAAAGCGCTCGTAGGA TTCC TCCCACGAGCGCTTTC TTTATCTAAATGTTA TERM 1070 1079066 - 1079039 - T 100 -17.8 -4.87892 | opp_overlap 1079035 1079039, overlap 1079035 CCTTAATAAAAGAAA GCGCTCGTAGGA TTCC TCCCACGAGCGC TTTCTTTATCTAAAT TERM 1071 1079039 - 1079066 + T 100 -15.6 -4.63044 | opp_overlap 1079039 1079035, overlap 1079035 CCTTAATAAAAGAAA GCGCTCGTAGGA TTCC TCCCACGAGCGC TTTCTTTATCTAAAT glyQ 1082135 - 1079091 - | glycyl tRNA synthetase TERM 1072 1083394 - 1083379 - g 75 -3.3 -5.11836 | AGAGCTAAAACAAAA GATTC AGAAAA GAATC ATGAGAGTAAAGATT pgsA_2 1082791 - 1083411 + | glycerol-3-P phosphatydyltransferase glgA 1084823 - 1083393 - | glycogen synthase TERM 1073 1083506 - 1083491 - G 80 -9 -3.98173 | TCAAATTCAACCAAA CGTCAG GCTC CTGACG ATACGTCGTTACAGC TERM 1074 1084487 - 1084474 - G 70 -8.1 -3.65812 | overlap 1084475 GCTTCTTGAAGATAA GCTGC AGCT GCAGC TGCAAAAGCAGAGAA ctc 1085278 - 1085835 + | 50S ribosomal protein L25/general stress protein Ctc TERM 1075 1085983 - 1085997 + G 73 -8.6 -3.6279 | opp_overlap 1085985 ATGCCATGCTTTAAT GACTCT CGT AGAGTC TTCTTCAGGGCCTTT pth 1085837 - 1086379 + | peptidyl-tRNA hydrolase rpsF 1086471 - 1086809 + | 30S ribosomal protein S6 rpsR 1086827 - 1087075 + | 30S ribosomal protein S18 TERM 1076 1087229 - 1087202 - g 82 -3.4 -5.45652 | gap 1, opp_overlap 1087216 1087217 ATCCCTAAGAAAAAA GCAGTGATTGCTG GTG CAGGAA-CTCTGC GTTTACAAGCTAAAC TERM 1077 1087536 - 1087502 - g 79 -7.9 -4.29139 | TTAAAGCTAAAAGAA GAAGTAACCGCAACC TTATT GGTCGAAGTTACCTC TGACAATGAATACGT rplI 1087091 - 1087600 + | 50S ribosomal protein L9 TERM 1078 1088019 - 1088032 + G 100 -2.4 -6.59152 | overlap 1088013 TGGGCTCGAGAAATC GGAA GCGATG TTCC TTTTTTTTTTCTTCA CPj0954 1087635 - 1088060 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 1079 1088258 - 1088240 - gf 88 -7.5 -4.89339 | AATGATCTAGAAAAA TCCGTAT TTCGT ATACGGA CAGACTTGAAAAATA CPj0955 1087994 - 1088527 + | hypothetical protein TERM 1080 1088721 - 1088734 + F 87 -2.4 -6.09196 | ACCCTCACATTCTCT TCCT ACTTAA AGGA TTTTTTTATTTTAAA CPj0956 1088909 - 1090261 + | hypothetical protein TERM 1081 1090310 - 1090270 - T 100 -18.7 -3.63425 | opp_overlap 1090275 1090279, overlap 1090275 1090279 CAGGTAAACTAAAGA TAAAACAAAGGCATAAGAT ATG ATCTTATGCCTTTGTTTTT AAGAGGTCTTCTGAG TERM 1082 1090305 - 1090275 - T 100 -18.6 -4.85894 | opp_overlap 1090275 1090279, overlap 1090270 1090279 AAACTAAAGATAAAA CAAAGGCATAAGAT ATG ATCTTATGCCTTTG TTTTTAAGAGGTCTT TERM 1083 1090275 - 1090305 + T 100 -18.6 -4.59511 | opp_overlap 1090270 1090275 1090279, overlap 1090279 AAACTAAAGATAAAA CAAAGGCATAAGAT ATG ATCTTATGCCTTTG TTTTTAAGAGGTCTT TERM 1084 1090301 - 1090279 - T 100 -13.6 -4.91778 | opp_overlap 1090275 1090279, overlap 1090275 1090270 TAAAGATAAAACAAA GGCATAAGAT ATG ATCTTATGCC TTTGTTTTTAAGAGG TERM 1085 1090279 - 1090301 + T 100 -13.6 -4.85782 | opp_overlap 1090279 1090275 1090270, overlap 1090275 TAAAGATAAAACAAA GGCATAAGAT ATG ATCTTATGCC TTTGTTTTTAAGAGG ide 1093137 - 1090309 - | insulinase family/protease III TERM 1086 1091917 - 1091901 - G 78 -9.5 -3.59946 | TGCCCAAGGATACAA TCTGCTT ACA AAGCAGA TCAAACAATGGACTT TERM 1087 1092636 - 1092646 + g 73 -5.4 -4.60797 | CAGCGAATTCTTGAT GTAC TGC GTAC TTTTCTCTATCAAGA plsB 1094134 - 1093139 - | glycerol-3-P acyltransferase TERM 1088 1094071 - 1094059 - G 77 -6.3 -4.73388 | overlap 1094046 AATTCTGATGAAAAA CAGAA AAT TTCTG ATATAAAGGCTCTGG cafE 1095692 - 1094145 - | axial filament protein TERM 1089 1095241 - 1095227 - G 84 -10 -3.86822 | opp_overlap 1095226 1095225 1095229 CAATTTTTCGAGAAA CACCTC GGT GAGGTG AGTTTGGTAAAAGTA CPj0960 1096113 - 1096454 + | hypothetical protein rpmF 1096467 - 1096649 + | 50S ribosomal protein L32 TERM 1090 1096696 - 1096713 + G 76 -7.7 -4.08557 | GCATAGATTTAATGG GAGGGGA CCAT TCTCCTC TTGTTGTTTGGCAAG plsX 1096665 - 1097627 + | putative glycerol-3-phosphate acyltransferase PlsX pmp_21 1097747 - 1102576 + | outer membrane protein D family protein TERM 1091 1102608 - 1102626 + T 100 -11.8 -5.7827 | opp_overlap 1102608 TTCAATCAAAAAAAA GGGTTACT TTT AGTAACCC TTTTTTATTTCTCTT TERM 1092 1102626 - 1102608 - T 100 -11.8 -5.95166 | opp_overlap 1102608 TTCAATCAAAAAAAA GGGTTACT TTT AGTAACCC TTTTTTATTTCTCTT CPj0964 1104107 - 1102647 - | hypothetical protein TERM 1093 1103685 - 1103675 - G 73 -5.4 -4.59773 | overlap 1103679 TGTTATCCTCAAAAA GCAA CGC TTGC AAAGCGAAAATGAAG TERM 1094 1103691 - 1103679 - G 72 -7.7 -3.81256 | overlap 1103675 ATCCTCAAAAAGCAA CGCTT GCA AAGCG AAAATGAAGGGTTGA TERM 1095 1103969 - 1103985 + g 77 -6.5 -4.63932 | overlap 1103958 1103970 GAGCCACGTTGGTTA GGCGTGT TTG ACACGCA TTTTCTTCCAAGATA TERM 1096 1103970 - 1103984 + g 76 -10 -3.37877 | overlap 1103958 1103969 AGCCACGTTGGTTAG GCGTGT TTG ACACGC ATTTTCTTCCAAGAT TERM 1097 1104155 - 1104173 + r 72 -2.5 -5.27938 | TTATACTTTCTAAGA TTGATTG TTATT CAATTAA TTTTTATTTAGAAAT TERM 1098 1104236 - 1104248 + r 71 -6.3 -4.17048 | TATACTTATTTATGA GTTCT TAA AGAAC TTGTTTTAAGAAACC lpxB 1106085 - 1104271 - | lipid-A-disaccharide synthase pcnB_2 1107386 - 1106094 - | poly A polymerase TERM 1099 1106398 - 1106380 - G 70 -7.6 -3.73072 | AATTGTTCTAGGAAA TTTTTGAT ATA ATCAAAAA CGGATGTCAAAGACA pgm 1107861 - 1109237 + | phosphoglucomutase TERM 1100 1110467 - 1110480 + G 71 -6.7 -4.10257 | AAAGGCTTTTACCTC GCAAC TCTT GTTGC TTGTGTTTTTGGGTT glmS 1109244 - 1111073 + | D-fructose-6-phosphate amidotransferase TERM 1101 1111243 - 1111255 + G 87 -6.2 -5.08824 | CAGTTCCTGTATTGA CCGC AAAAG GCGG TTTTTTCCCTGCAAC TERM 1102 1111304 - 1111314 + G 75 -8.2 -3.85389 | CTGGCTTTTTTCTAT GGCC TCA GGCC TTTGCCTTCTTGAAG tyrP_1 1111161 - 1112351 + | tyrosine transport TERM 1103 1112526 - 1112544 + G 71 -2.4 -5.098 | overlap 1112527 CCCTGGGTCTTTATT TTTCTGGA TTA TACAGAAG TTTATTTTCTTTTTG TERM 1104 1113079 - 1113089 + G 70 -5.4 -4.55023 | CATGGTATTTTGGTA TCTG CTG CAGA TTTTCTCATCTTCAG yccA_2 1112402 - 1113118 + | transport permease ftsY 1113999 - 1113127 - | cell division protein ftsY sucC 1114070 - 1115230 + | succinyl-CoA synthetase subunit beta sucD 1115244 - 1116125 + | succinyl-CoA synthetase subunit alpha TERM 1105 1117092 - 1117112 + G 78 -4 -5.1861 | overlap 1117078 GGTAAACGAAACCTT GTGCGT TTACTTCTC ACGCAC TTTTTTAATCCTCCA CPj0975 1116804 - 1117340 + | hypothetical protein TERM 1106 1117747 - 1117721 - f 76 -6.8 -4.58563 | opp_overlap 1117720, overlap 1117718 TAATTATAAAAATAA TTTACTTTTTAA TAA TTAAAATGTAAA CTGTGTGCACTTTAA TERM 1107 1117847 - 1117834 - g 74 -9.5 -3.28219 | overlap 1117832 AACTTCACCAGAACA CCGCC TGAT GGCGG CATTAGACCGTTGGT TERM 1108 1118813 - 1118825 + G 75 -3.3 -5.18371 | AGCTCATTCACTATG CGTGG TAA CCAAG TTTTATTTTATACCA CPj0976 1117784 - 1118890 + | hypothetical protein CPj0977 1119073 - 1120107 + | hypothetical protein TERM 1109 1121753 - 1121735 - g 73 -2.5 -5.10064 | gap 1, overlap 1121736 1121738 GTGAATAGACAAAAA GTATCTTC GATT GAAGAT-C TGAATAGAACGTTAA htrA 1120385 - 1121851 + | DO serine protease TERM 1110 1121912 - 1121885 - T 71 -7.8 -3.5511 | opp_overlap 1121886 1121889, overlap 1121883 1121886 1121889 TTTGATTCATAAAGA GGAATGAAGAGA GTTC TCTCTTCACTCT TTTATTTTAGGAAGC TERM 1111 1121911 - 1121886 - T 83 -11.3 -2.72745 | opp_overlap 1121886 1121889, overlap 1121885 1121883 1121889 TTGATTCATAAAGAG GAATGAAGAGA GTTC TCTCTTCACTC TTTTATTTTAGGAAG TERM 1112 1121886 - 1121911 + T 100 -9.1 -5.07652 | opp_overlap 1121886 1121885 1121883 1121889, overlap 1121889 TTGATTCATAAAGAG GAATGAAGAGA GTTC TCTCTTCACTC TTTTATTTTAGGAAG TERM 1113 1121908 - 1121889 - T 79 -9.4 -3.50737 | opp_overlap 1121886 1121889, overlap 1121886 1121885 1121883 ATTCATAAAGAGGAA TGAAGAGA GTTC TCTCTTCA CTCTTTTATTTTAGG TERM 1114 1121889 - 1121908 + T 74 -9.4 -3.08754 | opp_overlap 1121889 1121886 1121885 1121883, overlap 1121886 ATTCATAAAGAGGAA TGAAGAGA GTTC TCTCTTCA CTCTTTTATTTTAGG CPj0980 1123387 - 1121906 - | hypothetical protein TERM 1115 1123827 - 1123845 + G 86 -10.4 -3.90112 | ACGCCGTGTTTCATC CTTTGCTT ACC AAGCAAAG TTTCCTTCAAGAGGC TERM 1116 1125758 - 1125782 + G 74 -10.1 -3.15544 | opp_overlap 1125758 1125765, overlap 1125765 CCAAGTATAAACTTA TATGTAACCTC TCG GGGGTTGCATA TTCCTGCACGTGCAG TERM 1117 1126119 - 1126144 + G 82 -8.3 -4.4009 | gap 1 TGGATATGCCCGTAG CGCCA-GGAAGC CGT GCTTCCGTAGCG TTTTATAGGCTAAAA CPj0981 1123436 - 1126360 + | zinc metalloprotease yigN 1127599 - 1126364 - | hypothetical protein pssA 1128405 - 1127608 - | glycerol-serine phosphatidyltransferase TERM 1118 1129430 - 1129417 - g 70 -8.1 -3.64466 | ATTTTATATAGAGAA GCTCG TGCA CGAGC CCGTGCTAATAAAGA TERM 1119 1131862 - 1131842 - g 71 -9.7 -2.57916 | overlap 1131841 TGAAAAATAAATCAG CGTCCACAA GTA TTGTGGTCG AAAGAAAAACAACCC nrdA 1128784 - 1131918 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1120 1132507 - 1132537 + G 76 -7 -4.51699 | overlap 1132498 1132508 TAGTAGGATACTATA TCATTATGGAAGGA ATC TTCTTCTATAGTGG TTTTGTAATGATTCT TERM 1121 1132694 - 1132673 - g 70 -2.9 -5.03961 | overlap 1132674 1132675 AATTAAAGAAGAAAA CCCCGAAGT TTGG ACTACGGAA CTACAAGAAGAAATC TERM 1122 1132938 - 1132922 - g 77 -3.7 -5.09762 | opp_overlap 1132917, overlap 1132917 1132925 1132936 1132937 TCTGAATAAAGAAAA GAATTTC TTT GAAACCC GGGTTACCGAATACC nrdB 1131939 - 1132979 + | ribonucleotide-diphosphate reductase subunit beta TERM 1123 1133002 - 1133034 + F 100 -10.7 -4.70879 | overlap 1133004 TCTTTTTCAAGGGAG TTTTGAGAGATGGTC TTA GATCGTCTCTCAGGA TTTTTCAGCTTTCCC TERM 1124 1133004 - 1133032 + F 81 -11.1 -2.6436 | overlap 1133002 TTTTTCAAGGGAGTT TTGAGAGATGGTC TTA GATCGTCTCTCAG GATTTTTCAGCTTTC TERM 1125 1133356 - 1133370 + G 93 -10 -4.26903 | TCAAGTACTTTGGAT CGCTGT GGA ACAGCG TTTTGATAGGGTAAG trmB 1133129 - 1133803 + | tRNA (guanine-N(7))-methyltransferase TERM 1126 1134459 - 1134473 + G 90 -4.2 -5.61881 | ATGTAGCGAATCGGT GTCGAG CCC CTAGAC TTTTTATTTTTCAGA ytgB_2 1133921 - 1134523 + | rRNA methylase murB 1135391 - 1134477 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1127 1135014 - 1135004 - G 82 -6.8 -4.87665 | CTGCATTCATAAAAA TGGC CCC GCCA ACCGACCCAGGGATG nusB 1135900 - 1135418 - | transcription antitermination protein NusB TERM 1128 1136567 - 1136550 - g 72 -6.3 -4.30995 | GTGCGCATAAAAGAA GTTAAGC TTAA GCCTAAC ATAGACGAAAATGAT infC 1136289 - 1136849 + | translation initiation factor IF-3 rpmI 1136827 - 1137021 + | 50S ribosomal protein L35 rplT 1137040 - 1137405 + | 50S ribosomal protein L20 TERM 1129 1137395 - 1137385 - f 79 -5.4 -5.07053 | opp_overlap 1137386, overlap 1137386 AACCAGGCTAAAAAA GCTT TGG AAGC CACAGTTTAGGGATT TERM 1130 1137564 - 1137534 - g 80 -2.6 -5.53991 | overlap 1137538 TACTTAGGAAAAAAA GGAATTTTTCGGAG TTT CTCAGAAAAATTAA AGCAATGTACAGATA TERM 1131 1137560 - 1137538 - g 74 -7.8 -4.06295 | overlap 1137534 TAGGAAAAAAAGGAA TTTTTCGGAG TTT CTCAGAAAAA TTAAAGCAATGTACA TERM 1132 1137987 - 1137963 - g 73 -5.8 -4.56702 | opp_overlap 1137986 CGTGAACTAAAGAAA CAACAACCTC CAATC AAAGTTGTTG CCCCCGGCCTATGTT TERM 1133 1138039 - 1138057 + G 73 -3.8 -4.99035 | overlap 1138040 CACGTTCTCATGTGC TCTTCCAT CAA GTGGAAGC TTTTTATGTAGATCA pheS 1137420 - 1138439 + | phenylalanyl-tRNA synthetase subunit alpha TERM 1134 1138561 - 1138581 + F 79 -8.3 -4.06384 | opp_overlap 1138560 1138556, overlap 1138562 TTCCGATAGAGGAAC TTTGTGGCT AAG AGCCACGAG TTTCTGGTATTCAAC TERM 1135 1138562 - 1138580 + F 77 -9.6 -3.03348 | opp_overlap 1138560 1138556, overlap 1138561 TCCGATAGAGGAACT TTGTGGCT AAG AGCCACGA GTTTCTGGTATTCAA TERM 1136 1140451 - 1140440 - g 88 -3 -5.7946 | TTGCTAAGAAAAAAA TTCT ATTC AGAA ATGATAAGCTTTTGC CPj0994 1138804 - 1140849 + | hypothetical protein CPj0995 1141918 - 1140818 - | hypothetical protein TERM 1137 1141456 - 1141489 + g 93 -13.3 -2.82491 | opp_overlap 1141462, overlap 1141458 1141462 CTGTTTGATCTTTGA GGTAAAGAGCAGGAA TTTT TCCCTGCTCTTTATC TGTCGTGCCTCTATC TERM 1138 1141458 - 1141487 + g 93 -12.3 -2.95774 | opp_overlap 1141462, overlap 1141456 1141462 GTTTGATCTTTGAGG TAAAGAGCAGGAA TTTT TCCCTGCTCTTTA TCTGTCGTGCCTCTA TERM 1139 1141483 - 1141462 - G 84 -10.9 -3.6502 | opp_overlap 1141458 1141456 1141462 GATCTTTGAGGTAAA GAGCAGGAA TTTT TCCCTGCTC TTTATCTGTCGTGCC TERM 1140 1141462 - 1141483 + g 83 -8.7 -4.1523 | opp_overlap 1141462, overlap 1141458 1141456 GATCTTTGAGGTAAA GAGCAGGAA TTTT TCCCTGCTC TTTATCTGTCGTGCC CPj0996 1142995 - 1141922 - | hypothetical protein TERM 1141 1142418 - 1142433 + g 74 -4 -4.98255 | ACAGTATCTTTAGTA GTGTCA GGGA TGATAC TTTTTATAATTCCCA TERM 1142 1142528 - 1142545 + g 80 -3.5 -5.37043 | ATGATCTACAGCGAT GAAAATA CGAT TGTTTTC TTTTTTCTGTAGAGT TERM 1143 1143158 - 1143191 + G 75 -9.1 -3.58518 | opp_overlap 1143158, overlap 1143156 TGATAAGCAATTAGA TCTTTTTTTTGCTTC TTTA GATGTAAAAAAAAGA TATTTGCTTGCTCTT mesJ 1143114 - 1144073 + | PP-loop superfamily ATPase TERM 1144 1144926 - 1144910 - g 73 -5.1 -4.64766 | CTGAGACGCTAAAAA GAGAACT TAA AGATCTC TACCAGCAAGTGGAA TERM 1145 1145707 - 1145721 + G 71 -3.4 -4.92314 | overlap 1145709 AAGGCTGTATCTGGA GAGGCG GAC CGTCCC TTTTTCTCCATTGCT ftsH 1144261 - 1146993 + | ATP-dependent zinc protease TERM 1146 1147053 - 1147029 - T 100 -13.7 -4.13945 | opp_overlap 1147029, overlap 1147032 ATTCTGATCCGAAAA GAACCTAGGAA ATC CTCCTAGGTTC TTTTTTTGTCTCAAT TERM 1147 1147029 - 1147053 + T 100 -13 -5.72616 | opp_overlap 1147029 1147032 ATTCTGATCCGAAAA GAACCTAGGA AATCC TCCTAGGTTC TTTTTTTGTCTCAAT TERM 1148 1147050 - 1147032 - T 93 -9.6 -4.19746 | opp_overlap 1147029, overlap 1147029 CTGATCCGAAAAGAA CCTAGGAA ATC CTCCTAGG TTCTTTTTTTGTCTC TERM 1149 1147105 - 1147128 + T 100 -10.4 -4.4261 | opp_overlap 1147105 GTAATCATAAAAAAA GCTAGTCTTT CTAA GAAGACTAGC TTTTCATGTTAAGCG TERM 1150 1147128 - 1147105 - T 100 -9.7 -5.71983 | opp_overlap 1147105 GTAATCATAAAAAAA GCTAGTCTT TCTAAG AAGACTAGC TTTTCATGTTAAGCG TERM 1151 1147190 - 1147207 + T 73 -4.1 -4.90869 | overlap 1147192 TAGAGTTGCTTTATG GCTCAAC TTAA GTTGACC TTTTTCATTGATGCT pnp 1149253 - 1147169 - | polynucleotide phosphorylase/polyadenylase TERM 1152 1147852 - 1147828 - G 70 -7.9 -3.65986 | TATCAGAAAGGATAA TCGCTCCTTGA TCA TCAAGGATCAA TCCCATAGCAATTCC TERM 1153 1147904 - 1147885 - G 72 -6.4 -4.39277 | overlap 1147888 CAATAGGAGAAGAAA TAGGGACG CCAG CGTCCATA AGAGCGAGGCAACCG TERM 1154 1148860 - 1148847 - G 70 -8.1 -3.63968 | overlap 1148840 TCTGAAATTGCTAAA GCAGC AGAT GCTGC GCAGATAGCAAGAGG TERM 1155 1149305 - 1149294 - R 79 -4.4 -5.29385 | AAGGGAACGAAAAAA CTAC TTAC GTAG ATTCAATCTTGTAAT rpsO 1149563 - 1149294 - | 30S ribosomal protein S15 yfhC 1149832 - 1150278 + | cytosine deaminase TERM 1156 1150324 - 1150371 + G 71 -7 -4.16284 | opp_overlap 1150333 1150342, overlap 1150325 GGATCAGGAGTCACG ACTTCAGAAGTTAGGAGAGGAA ATTG TTCCTAACCTCACTCCTGAAGA TTTATTGCAACCTAT TERM 1157 1150325 - 1150370 + G 77 -10.5 -3.09288 | opp_overlap 1150333 1150342, overlap 1150324 GATCAGGAGTCACGA CTTCAGAAGTTAGGAGAGGAA ATTG TTCCTAACCTCACTCCTGAAG ATTTATTGCAACCTA CPj1002 1150268 - 1150498 + | hypothetical protein CPj1003 1151202 - 1150495 - | hypothetical protein CPj1004 1151803 - 1151282 - | hypothetical protein CPj1005 1152339 - 1151818 - | hypothetical protein CPj1006 1152878 - 1152393 - | hypothetical protein CPj1007 1153095 - 1153316 + | hypothetical protein TERM 1158 1153634 - 1153650 + G 78 -5.1 -4.96646 | AAGTATGTTGTTGGA GAGACCT TAT ATGTCTC TTTTTGGTTATCTGG TERM 1159 1154428 - 1154438 + G 70 -5.4 -4.49556 | opp_overlap 1154428, overlap 1154434 1154436 1154436 GCAGTTTCTAGAAAA GAGT GAG ACTC TTTCTTTAGTAAGAA CPj1008 1153334 - 1154632 + | hypothetical protein map 1155464 - 1154589 - | methionine aminopeptidase CPj1010 1156078 - 1155470 - | hypothetical protein TERM 1160 1155909 - 1155890 - G 81 -9.4 -3.7626 | overlap 1155882 1155900 AGAAATATCCAAGAA TTGGAAGA AGCT TCTTCCAA AAGTAACGAAGAGGA CPj1011 1156712 - 1156305 - | hypothetical protein TERM 1161 1156810 - 1156838 + r 100 -14 -3.44051 | opp_overlap 1156813, overlap 1156813 AGGTAATATTTTTTA GAACAGGGTGTG AGTTA CACACTCTGTTC TTCTGGTAGTGACGG TERM 1162 1156813 - 1156835 + r 83 -9.9 -3.85864 | opp_overlap 1156813, overlap 1156810 TAATATTTTTTAGAA CAGGGTGTG AGTTA CACACTCTG TTCTTCTGGTAGTGA yzeB 1158599 - 1156824 - | ABC transporter permease fumC 1158651 - 1160033 + | fumarate hydratase TERM 1163 1160076 - 1160086 + T 74 -5.4 -4.7033 | opp_overlap 1160072, overlap 1160072 TGTATTGTAAAGTAC CGTA GCG TACG TTTTCTCTTCCCTTG ychM 1161832 - 1160135 - | sulfate transporter TERM 1164 1162690 - 1162706 + G 70 -5.1 -4.55383 | overlap 1162687 GTTACAATCTGCGCC TCCTAAG AGT CTTTGGA TTATTTTTATAGGTT CPj1015 1162040 - 1163302 + | hypothetical protein CPj1016 1163448 - 1165307 + | hypothetical protein TERM 1165 1165349 - 1165379 + F 93 -10.6 -3.95893 | gap 1, opp_overlap 1165347 TATTGCTTTAATATG CGCGCTTC-CAAT ATAAGC ATTGTGAAGCGCG TTTCATATGTCTTTT ispH 1165412 - 1166344 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 1166 1166918 - 1166954 + GT 75 -8.1 -3.85603 | TGTAGTCATTAGTAT TTCCTTCCCTTTAGA CTCTTTC TCAAGGGGGAAGGAA TGTTTCTTTACTGAA CPj1018 1166304 - 1167038 + | hypothetical protein CPj1019 1168534 - 1167041 - | hypothetical protein TERM 1167 1167390 - 1167373 - G 71 -9.9 -2.7186 | overlap 1167361 1167375 AAATTTCTCCAACCA TAGGAGC AATC GCTCCTA AAATACCTAACGTTG TERM 1168 1167790 - 1167802 + g 75 -3.4 -5.17507 | GTTGCCTTTGATCTC GATG TTCTT CATC TTTTTGTTGGCTTTT TERM 1169 1168405 - 1168423 + g 79 -11 -2.90904 | overlap 1168402 TCAGCATCGCATATT GCTCTCCT GCA GGGAGAGC TACTTGTACTTCTGC CPj1020 1170085 - 1168553 - | hypothetical protein lcrH_2 1170619 - 1170101 - | low calcium response protein H CPj1022 1172079 - 1170619 - | hypothetical protein TERM 1170 1171282 - 1171294 + g 71 -4.1 -4.855 | GACTGCCTCTACACC GAGAC CAC GTTTC TTCTTTTTCTTTTTA TERM 1171 1171403 - 1171419 + g 90 -5.8 -5.42975 | AGTTCATGAGATTTT GAGGTC GTCAG GGCCTC TTTTTGTTTCTCTGC TERM 1172 1172201 - 1172182 - H 79 -4.4 -5.2894 | gap 1, opp_overlap 1172182 AAAGAGAAAATAAAA CAAAAATCC AAG GG-TTTTTG TTTGCAAAAAACACT TERM 1173 1172421 - 1172409 - H 77 -4.9 -5.13722 | opp_overlap 1172409, overlap 1172404 CGTAGTAAAATAAAA TCTAA GGG TTAGA TTTTTTAGAGATCTT TERM 1174 1172409 - 1172421 + H 77 -4.9 -5.04987 | opp_overlap 1172409 1172404 CGTAGTAAAATAAAA TCTAA GGG TTAGA TTTTTTAGAGATCTT CPj1023 1172441 - 1172740 + | hypothetical protein xerD 1173642 - 1172737 - | site-specific tyrosine recombinase XerD TERM 1175 1173403 - 1173391 - G 80 -2.7 -5.55695 | TAAGAAGAGAAAAAA TACTT TTA AAGCA ATGAGCCTACGCGCT TERM 1176 1173600 - 1173589 - G 71 -3 -5.04597 | opp_overlap 1173589 ATCTACAGATAAAAA CAAT GAGA ATTG TTCTAGAATCGTTGT TERM 1177 1174608 - 1174629 + G 81 -9.5 -3.74178 | gap 1, opp_overlap 1174607, overlap 1174601 1174610 GCTTTGCAACCGAAC GC-TAGGGAG AAT CTCCCTATGC TTTCAGCTTTGATTA TERM 1178 1174610 - 1174626 + G 79 -10.9 -2.9587 | opp_overlap 1174607, overlap 1174608 1174601 TTTGCAACCGAACGC TAGGGAG AAT CTCCCTA TGCTTTCAGCTTTGA pgi 1173708 - 1175288 + | glucose-6-phosphate isomerase TERM 1179 1175316 - 1175328 + F 77 -4.8 -5.10208 | CCTTTCATAAGTCTA CCTC AGAGA GAGG TTTTTCTTAAGGTTC CPj1026 1175403 - 1175546 + | LtuA protein TERM 1180 1176780 - 1176803 + G 73 -8.8 -3.42943 | gap 1, overlap 1176778 1176783 GGCCTCATTTGGTTT GCCCCCGCCTG AGA CAGG-GGGGTC TGTATTTGTATTGCT TERM 1181 1176783 - 1176801 + G 78 -10.2 -3.27129 | overlap 1176780 1176778 CTCATTTGGTTTGCC CCCGCCTG AGA CAGGGGGG TCTGTATTTGTATTG TERM 1182 1176869 - 1176885 + G 72 -9.5 -3.14564 | opp_overlap 1176869 1176873 1176884 AGGTGCTGGCTACAA GGTATCT CAA AGATACC TTCGTGAGAAACTCA TERM 1183 1176885 - 1176869 - g 74 -9.5 -3.28791 | opp_overlap 1176869, overlap 1176873 1176884 AGGTGCTGGCTACAA GGTATCT CAA AGATACC TTCGTGAGAAACTCA CPj1027 1175581 - 1177161 + | hypothetical protein TERM 1184 1177140 - 1177154 + F 89 -11.4 -3.4582 | overlap 1177138 GGTCTGGCATCCGCC GGTCCC TAA GGGACC TCTTTAATCACCTAG mdhC 1177419 - 1178405 + | malate dehydrogenase CPj1029 1178411 - 1179250 + | hypothetical protein CPj1030 1180289 - 1179243 - | D-amino acid dehyrogenase arcD 1181955 - 1180510 - | arginine/ornithine antiporter TERM 1185 1180748 - 1180764 + g 77 -3.6 -5.08169 | opp_overlap 1180748 GTTATCATTGCCAAA GGGGCT TTAAT AGACCC TTTTTTAGGATATGT TERM 1186 1181854 - 1181882 + g 89 -11.8 -3.31461 | TGTCGCTGCCATGTT TTGGGGGAGG CTGAAAATC CCTCCCCCAA TTATGGAACTGACTA CPj1032 1182553 - 1181966 - | hypothetical protein CPj1033 1183903 - 1182587 - | hypothetical protein CPj1034 1184920 - 1184132 - | Omp aroDE 1186403 - 1184970 - | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein aroB 1187538 - 1186384 - | 3-dehydroquinate synthase TERM 1187 1186449 - 1186434 - G 70 -7.6 -3.6336 | overlap 1186427 GTATATCATAGAGAA TCTCCA TATT TGGAGA TGCACAATAGGTACC TERM 1188 1187476 - 1187455 - G 86 -10.3 -3.82061 | opp_overlap 1187461, overlap 1187458 GGATATAGAAGAGAA CAACTTCTT CTGG AAGAAGTTG GATATGAGTTTCACT aroC 1188602 - 1187523 - | chorismate synthase aroL 1189129 - 1188599 - | shikimate kinase aroA 1190402 - 1189065 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1189 1189196 - 1189176 - GR 89 -11.3 -3.35371 | TAGAGTCTGAACGAA GTTAGGAAA GGT TTTCCTAAC GCACGCAGTGTTGTG TERM 1190 1189375 - 1189396 + gr 75 -7.3 -4.11501 | overlap 1189385 TTCTGTAGTTCTTCG GTGATTGCA AGAA TGCGATCGC TTTCCTTGTCTTTAG TERM 1191 1189696 - 1189669 - GR 74 -9.2 -3.01001 | gap 1, opp_overlap 1189693, overlap 1189688 GATTTTGAAAGTAGA GCAGCTGCAGC AATGAAA GCTGC-GCTGC TGAAATCACCAGTTA CPj1040 1191144 - 1190473 - | hypothetical protein TERM 1192 1190581 - 1190595 + g 80 -11.4 -2.6732 | opp_overlap 1190577, overlap 1190580 1190575 ATAGCCTAAGAGTTC CTCCCC GTG GGGGAG ATCTTTAAGTTCACG TERM 1193 1190976 - 1191002 + g 85 -2.2 -5.86061 | overlap 1190976 1190977 AAACTTCTTCCTTTA CCTCCGTAGG ATGTTCA CTTGCGGAGA TTTTTTTTGCTCCAC TERM 1194 1191101 - 1191064 - G 73 -9.9 -3.05844 | gap 1, opp_overlap 1191057, overlap 1191090 TTGTGCATGCCAATA GTTGGAAGCTACGATCTC TTT GAGAACGG-GCTCCCAAC GAGAGGCTGTGTGGA bioA 1192397 - 1191126 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 1195 1191317 - 1191295 - GR 71 -4.8 -4.61231 | opp_overlap 1191297, overlap 1191298 CTATATTGTGAAAAA TATCCTGTAG CTT CTGCAGGGTA ATCTAGAGCGAGTAC TERM 1196 1191995 - 1192005 + gr 74 -6.8 -4.35682 | opp_overlap 1191994 1191995 TGAGTCCAACAAAAT GGCT CTT AGCC TTGTTTTGATTGTAG TERM 1197 1192026 - 1192036 + gr 71 -5.4 -4.50241 | opp_overlap 1192024 1192026, overlap 1192031 1192033 TTGATTGTAGTAATA TTGC ACA GCAA TTTTCATTGCTATTT bioD 1192993 - 1192334 - | dethiobiotin synthetase bioF_2 1194120 - 1192972 - | oxononanoate synthase TERM 1198 1193936 - 1193962 + g 100 -15.2 -3.28405 | AGCCGAGACCCTGTA GCTCCAAGCGAT TCT ATCGCATGGAGC TTGGTAATGTATTCT bioB 1195094 - 1194099 - | biotin synthase TERM 1199 1195164 - 1195186 + r 100 -13.6 -5.34555 | opp_overlap 1195159 1195164 1195170 TTTAGAGAAAGTCAA TAGGAACCAA TTT TTGGTTCCTA TTTTTTATGGTATGA TERM 1200 1195186 - 1195164 - R 95 -13.6 -3.35695 | opp_overlap 1195164, overlap 1195159 1195170 TTTAGAGAAAGTCAA TAGGAACCAA TTT TTGGTTCCTA TTTTTTATGGTATGA CPj1045 1195993 - 1195301 - | hypothetical protein phhA 1197078 - 1195990 - | phenylalanine 4-monooxygenase TERM 1201 1196884 - 1196872 - GH 71 -4.9 -4.58283 | overlap 1196861 TAAGTTTTTGAAAAA TTCTA AAA TAGAA ATGCATTTGTGTCGA dapB 1196955 - 1197749 + | dihydrodipicolinate reductase asd 1198009 - 1199010 + | aspartate-semialdehyde dehydrogenase TERM 1202 1199281 - 1199299 + G 70 -6 -4.37971 | opp_overlap 1199280, overlap 1199283 CCTATCTACAACATC TGGAGATC TCA GATCTCGA TTTTGCTCGTATTTT TERM 1203 1200012 - 1200002 - g 70 -5.4 -4.52047 | GATGATAGCACAAAA CAAC GTC GTTG GATTTGTAATGGATG TERM 1204 1200294 - 1200276 - g 74 -7.6 -3.9093 | GGTATTATAGAAGAA TTACATAA TGA TTATGTAA AACAAAAAGCTATAG lysC 1198998 - 1200320 + | aspartate kinase dapA 1200329 - 1201204 + | dihydrodipicolinate synthase CPj1051 1201365 - 1201676 + | hypothetical protein CPj1052 1201820 - 1202575 + | hypothetical protein TERM 1205 1202954 - 1203001 + G 74 -8 -3.95324 | gap 1 AGAAAGTTTAATGAT TTCTGAAAAGCTTGCGATGACTT TCC AAGTTAGCG-AAGTTATTCAGAA TTGTTATTCACAATG CPj1053 1202556 - 1203107 + | hypothetical protein TERM 1206 1203139 - 1203168 + F 100 -14.5 -5.67063 | opp_overlap 1203139 CTTGGACTTGAAAAA GCCATTCCTATTT GAAA AAATGGGAATGGC TTTTTTTATAATAGG TERM 1207 1203168 - 1203139 - f 100 -12.3 -4.62069 | opp_overlap 1203139 CTTGGACTTGAAAAA GCCATTCCTATTT GAAA AAATGGGAATGGC TTTTTTTATAATAGG TERM 1208 1203550 - 1203571 + G 93 -2.4 -6.17292 | gap 1 TTTAGTTTTGGGTAT GCT-CTTAA CTGAT TTAAGGAGC TTTTTTTTTGCCTTT CPj1054 1203437 - 1203730 + | hypothetical protein TERM 1209 1203742 - 1203763 + F 85 -8.7 -4.08692 | CTGAAGGGGGTTCCC CTGGCTCCT TTTG AGGACCCAG TTTTACAGGCAGTTA TERM 1210 1203931 - 1203946 + F 77 -9 -3.60818 | opp_overlap 1203943 CAAGTTTTGAACTTT GGGGTT GAGG AACCCC TTTGGGAAATTTTCG TERM 1211 1204054 - 1204070 + F 73 -8 -3.54459 | opp_overlap 1204046 TGCAAAATCTGAATC CCTGGA TTGGT TCCAGG TTTCAAACCGGTTAG TERM 1212 1204820 - 1204810 - f 71 -6.8 -4.09108 | TCTAATTTAGAGAAA GCCT ATG AGGC TATCGAAGAGAACTA TERM 1213 1205875 - 1205893 + F 83 -8.2 -4.43877 | GAGGACCATTCCTAG CATAACTC CAA GAGTTGTG TTTCTTTAAAAATTC TERM 1214 1206706 - 1206719 + G 71 -6.7 -4.13014 | GGAGTGGCGAAGACG GCCTT TGAA AAGGC TTTTGGAGCTCTGGA CPj1055 1206028 - 1206858 + | hypothetical protein CPj1056 1206861 - 1207565 + | hypothetical protein TERM 1215 1207709 - 1207736 + F 72 -9.4 -2.65751 | opp_overlap 1207713 1207716, overlap 1207708 GTGTTTTAATTATTA CTAACTATTTTA TTTA TAAAATGGTTAG CTCTTCTGTTCATCA TERM 1216 1208275 - 1208226 - g 100 -15.3 -3.53012 | gap 1, opp_overlap 1208229, overlap 1208229 TTTTTTCTCTGTAAA CTATTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAATTA TTGATAAGCTTCATT TERM 1217 1208272 - 1208229 - g 100 -19.2 -2.90496 | gap 1, opp_overlap 1208229, overlap 1208226 TTTCTCTGTAAACTA TTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAA TTATTGATAAGCTTC TERM 1218 1208229 - 1208272 + G 100 -14.8 -3.73534 | gap 1, opp_overlap 1208226 1208229 TTTCTCTGTAAACTA TTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAA TTATTGATAAGCTTC TERM 1219 1209399 - 1209419 + G 70 -2.6 -4.98436 | gap 1, overlap 1209397 AGAAGTCGTCCTTTC CTTCCGTTC AGAA GAA-GGAGG TTTTTATAGTGTTGA CPj1057 1207831 - 1209933 + | hypothetical protein TERM 1220 1210234 - 1210250 + G 80 -6.5 -4.88918 | overlap 1210235 GGATCCTTCAGGTCT AGCGATC CAC GATCGCA TTTTGTTTAAGGTAG TERM 1221 1210235 - 1210249 + G 78 -10 -3.52628 | overlap 1210234 GATCCTTCAGGTCTA GCGATC CAC GATCGC ATTTTGTTTAAGGTA CPj1058 1210082 - 1211173 + | hypothetical protein ksgA 1211182 - 1212015 + | dimethyladenosine transferase tktB_2 1213992 - 1212058 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1222 1213478 - 1213454 - G 71 -9.5 -2.94354 | opp_overlap 1213447, overlap 1213473 TTAGAGATCGACATA TTGTTGTCATT CAA AATAACAACAA ACTTCGATAAATCTG CPj1061 1214254 - 1213997 - | hypothetical protein xseA 1216154 - 1214490 - | exodeoxyribonuclease VII large subunit TERM 1223 1214547 - 1214537 - G 71 -6.8 -4.2349 | opp_overlap 1214537 TTGTGACAGTTAAAA TGGC CTC GCCA TCTTGCAACTGAATC TERM 1224 1214759 - 1214770 + g 78 -2.2 -5.50313 | AAGTTTCCTTGACAT TTGC ATAG GCGA TTTTTTGGTTTTGTA TERM 1225 1215761 - 1215771 + g 82 -3.2 -5.53288 | ATTGAGGAGCAAAGG GGAG GGG CTTC TTTTTTTCAGTTGCG TERM 1226 1216648 - 1216666 + G 71 -6.6 -4.21773 | GTAAAGTCTGTAGCT CAGGCGGG ACT CGTGCCTG TTCTTTGTGTTGGAG tpiA 1216285 - 1217049 + | triosephosphate isomerase CPj1064 1217053 - 1217232 + | hypothetical protein CPj1065 1217429 - 1217259 - | hypothetical protein secG 1217469 - 1217825 + | preprotein translocase subunit SecG TERM 1227 1218574 - 1218558 - g 71 -2.3 -5.10077 | overlap 1218560 1218565 AAAGATCCTAAAAAA TTTAAAG CCT CTTTAGA GAAGATCAAACGTCG def 1218069 - 1218629 + | peptide deformylase rnhB_2 1219592 - 1218696 - | ribonuclease HIII TERM 1228 1219223 - 1219238 + g 80 -2.6 -5.45726 | overlap 1219211 TTTTAGAGTCTTGGA CTTTAT TCTC ATAGAG TTTTTTTAAGATCTC yfgA 1219847 - 1220278 + | HTH transcriptional regulator CPj1070 1221845 - 1220475 - | hypothetical protein TERM 1229 1222202 - 1222226 + r 75 -5.1 -4.97405 | opp_overlap 1222212 ACAAAAGCTTCGCGG CAAAAAATAGG AAT CTTATTCTTTG TTTATTTTTATCCCT CPj1071 1223659 - 1222217 - | hypothetical protein TERM 1230 1224842 - 1224853 + G 78 -4.4 -5.24129 | TCGATAGTGCCCCCT CAGA TGCC TCTG TTTTTTATAAAGGCG CPj1072 1224304 - 1225173 + | hypothetical protein CPj1073 1225346 - 1226170 + | putative outer membrane protein