TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.585865 %AT, 1078088 nt, 7951 terms. Intergenic: 0.655457 %AT, H2T: 151065 nt, 896 terms; T2T: 32742 nt, 401 terms; H2H: 63242 nt, 713 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|33241335|ref|NC_005043.1| Chlamydophila pneumoniae TW-183, complete genome (length 1225935) CpB0001 282 - 1 - | hypothetical protein TERM 1 104 - 94 - G 73 -5.4 -4.64846 | GCAGAAAGGACAAAA GCTT AGC AAGC AAATGACACCAGCAA TERM 2 263 - 251 - G 70 -7.7 -3.64549 | AGAATAACAATAAGA GAGGA TAA TCCTC GAATAATTTTGCCTA CpB0002 417 - 569 + | hypothetical protein gatC 573 - 878 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 895 - 2373 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 3 2874 - 2887 + G 71 -6.7 -4.17906 | TGTCCTGAAGATGCT GTTGC TTAC GCAAC TTCTTTGGTTTCCTT TERM 4 3610 - 3588 - g 74 -9.9 -3.09834 | opp_overlap 3587 GATCTTATGATGGAA TCCCCAGGA AAGAA TCCTGAGGA GATTTTAAAAGAGAA gatB 2370 - 3836 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 5 3907 - 3866 - f 95 -9 -5.00616 | opp_overlap 3874, overlap 3869 3874 GTCTGTCTTAAAAAA TCATAAAAGCATGTTAGA GATCTT TCTAACATGCTTTTTTTA TCTAAATACACATTT TERM 6 3904 - 3869 - f 87 -10.7 -3.37655 | opp_overlap 3874, overlap 3866 3874 TGTCTTAAAAAATCA TAAAAGCATGTTAGA GATCTT TCTAACATGCTTTTT TTATCTAAATACACA TERM 7 3899 - 3874 - f 100 -10.6 -4.76171 | opp_overlap 3874, overlap 3869 3866 TAAAAAATCATAAAA GCATGTTAGA GATCTT TCTAACATGC TTTTTTTATCTAAAT TERM 8 3874 - 3899 + F 100 -11.3 -5.72616 | opp_overlap 3869 3866 3874 TAAAAAATCATAAAA GCATGTTAGAG ATCT TTCTAACATGC TTTTTTTATCTAAAT TERM 9 4997 - 4984 - g 70 -5.3 -4.41616 | AGTCTTTGAAAGAAA CCATT CCAT AATGG GTGGCGGAGCCATTT TERM 10 5370 - 5351 - g 70 -9.4 -2.82491 | TACACAGGGACCATA CTCTTTTC TGGA GAAAAGAG TCTAGCAAACGATCC CpB0006 4127 - 6895 + | outer membrane protein 6 TERM 11 7029 - 7057 + T 89 -8.9 -4.62441 | overlap 7032 ATACTCGTATCACCT CAGCCCCTAGAGA CAT TCTTTAGGGGTTC TTTATTTGTCTAAAC TERM 12 7032 - 7054 + T 100 -12.8 -4.41158 | overlap 7029 CTCGTATCACCTCAG CCCCTAGAGA CAT TCTTTAGGGG TTCTTTATTTGTCTA CpB0007 7293 - 7138 - | hypothetical protein TERM 13 8529 - 8553 + G 80 -11.4 -2.72461 | opp_overlap 8529 8544, overlap 8528 GATGAAGAGAGTATA CGGCTGCAGC AGGAA GCTGAAGCCG CTTTAGCAAGACTTC TERM 14 8553 - 8529 - g 83 -11.4 -2.92889 | opp_overlap 8529 8528, overlap 8544 GATGAAGAGAGTATA CGGCTGCAGC AGGAA GCTGAAGCCG CTTTAGCAAGACTTC CpB0008 7605 - 10499 + | hypothetical protein CpB0009 10864 - 11688 + | hypothetical protein CpB0010 11815 - 13122 + | hypothetical protein CpB0011 13323 - 13598 + | HB2 protein TERM 15 14704 - 14694 - g 71 -6.8 -4.09108 | TCTAATTTAGAGAAA GCCT ATG AGGC TATCGAAGAGAACTA CpB0012 13692 - 15749 + | hypothetical protein TERM 16 15743 - 15763 + F 74 -9.1 -3.00766 | TAATCGTGAGGACCA TTCCTAGAA CTA TTCTAGGAG TCTATGTGCACTATT TERM 17 16106 - 16119 + G 73 -5.3 -4.68655 | overlap 16115 TTAGTACGATTTCTC TAGGA GTTG TCCTA TTTGTTTTAGGATTG CpB0013 15892 - 16617 + | hypothetical protein CpB0014 16644 - 18215 + | hypothetical protein TERM 18 18275 - 18294 + F 78 -7.9 -4.10791 | TTCCATTTCTCTAGG GATCCTC TTAGCT GAGGATC TTCTTTGTACCTCTT TERM 19 18301 - 18328 + F 77 -9.3 -3.281 | opp_overlap 18324, overlap 18299 CTGAGGATCTTCTTT GTACCTCTTTT GATTCG AAAAGAGGTGC TATTGTGAGTTGCCA TERM 20 18433 - 18449 + F 72 -5.8 -4.31737 | opp_overlap 18421, overlap 18439 18443 AACTCCCAAGATTTT GGCTTG GAAAG CGAGCC TTTCTTGCTACTTTT TERM 21 19839 - 19817 - gf 74 -4 -4.98672 | overlap 19818 19821 GGGAAAAAGATAAAA CTCAGTGCTG CCA CAGCTCAGAA AGATATTCGTATAGA CpB0015 18563 - 20722 + | outer membrane protein 7 CpB0016 20653 - 21108 + | outer membrane protein 5 TERM 22 21134 - 21163 + F 81 -10.1 -3.37056 | TTCGATGCTATTTTT CCATGGCTATTTT TAAA ATGATAGCCATGG TTATAGATACGTAGT TERM 23 21627 - 21614 - gf 71 -3.1 -4.99861 | CAGCAATCACAAAAA GCTGT TTTA ACAAC ACTAAGGGCGATTTG TERM 24 21745 - 21722 - gf 75 -9.6 -2.73875 | opp_overlap 21723, overlap 21719 CTGCTGTTAACAGCA GCGTGGTAGA TAAA TCTACCACGT TTATAGGGTTTTCTT TERM 25 21723 - 21744 + GF 100 -13.1 -3.98009 | opp_overlap 21722 21719 TGCTGTTAACAGCAG CGTGGTAGA TAAA TCTACCACG TTTATAGGGTTTTCT TERM 26 21833 - 21797 - gf 73 -8.7 -3.33261 | opp_overlap 21801 21818 CTGGAAGTTCGATAA CTACCGGCAAAGGAGCC GTT AGCTGCTCTACGGGTAG CTTGAGTTTGACAAA CpB0017 21391 - 21924 + | to outer membrane protein 5 TERM 27 23294 - 23308 + GF 78 -5.6 -4.82667 | TGCAAACGAAGGGTT GCAGGG AGA CCGTGC TTTTTGGTGTGCTGG CpB0018 21858 - 24176 + | outer membrane protein 5 TERM 28 24207 - 24257 + F 93 -11.5 -3.95448 | gap 1, opp_overlap 24207 24219, overlap 24219 AAAGAGCTCCATACA TCGAAG-GGAAAAGAGCTTTTAAG ATTT CTTGAAGGCTCTTTTCGATTTCGA TTTCCATTTTAGTGT TERM 29 24219 - 24244 + F 93 -9.1 -4.37198 | opp_overlap 24207 24219, overlap 24207 ACATCGAAGGGAAAA GAGCTTTTAAG ATTT CTTGAAGGCTC TTTTCGATTTCGATT TERM 30 24269 - 24285 + F 83 -8.1 -4.35405 | TCGATTTCCATTTTA GTGTTTT GCT AAAACAC TTTCTAATTTTTTTC TERM 31 25500 - 25518 + GF 71 -4.6 -4.70659 | opp_overlap 25500, overlap 25502 CAGAAATGCTATAGA TCTTGCAT CGA ATGCAAAA TTTTTAAATCTCCGA TERM 32 25520 - 25552 + GF 74 -6.3 -4.39748 | opp_overlap 25527, overlap 25521 25543 CATCGAATGCAAAAT TTTTAAATCTCCGAG CGA CTCGGGGAAATAAAG TTATTTTCTATGATC TERM 33 25545 - 25527 - gf 77 -8.8 -3.66666 | opp_overlap 25521 25520 25543 TGCAAAATTTTTAAA TCTCCGAG CGA CTCGGGGA AATAAAGTTATTTTC CpB0019 24415 - 26190 + | outer membrane protein 5 TERM 34 27078 - 27092 + GF 75 -7.2 -4.22346 | overlap 27074 27087 ATCATCATGCCTTTG CTTCAA ACT TTGAAG TTTTCAGTCAGTTTG CpB0020 26108 - 27172 + | outer membrane protein 5 TERM 35 27198 - 27254 + F 76 -3.8 -5.34632 | gap 1, opp_overlap 27211, overlap 27207 27209 27211 TCCAACGAGATAGCA TCAGGGTAA-GCCAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTCTCTTTGTCTTGC TTTTTGTATTTTATT TERM 36 27207 - 27244 + F 100 -9.9 -4.34766 | opp_overlap 27211, overlap 27198 27209 27211 ATAGCATCAGGGTAA GCCAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTCTC TTTGTCTTGCTTTTT TERM 37 27209 - 27242 + F 90 -11.1 -3.74137 | opp_overlap 27211, overlap 27207 27198 27211 AGCATCAGGGTAAGC CAGGGCTCTATGTAA GAGA TTTCATAGAGCCCTC TCTTTGTCTTGCTTT TERM 38 27211 - 27240 + F 95 -13.7 -3.42943 | opp_overlap 27211, overlap 27209 27207 27198 CATCAGGGTAAGCCA GGGCTCTATGTAA GAGA TTTCATAGAGCCC TCTCTTTGTCTTGCT TERM 39 27240 - 27211 - f 89 -13.7 -2.54193 | opp_overlap 27211 27209 27207 27198 CATCAGGGTAAGCCA GGGCTCTATGTAA GAGA TTTCATAGAGCCC TCTCTTTGTCTTGCT CpB0021 27317 - 27505 + | hypothetical protein TERM 40 28114 - 28100 - g 70 -2.8 -5.02476 | ACATCTTCGAAAAAA GGAG GGGCGAT CTCC ACGACTCAAGGACTT TERM 41 28492 - 28504 + G 70 -5.5 -4.46926 | overlap 28485 GATTTTGGGAGGGCA GGGAG GCG CTCTC TTTTCTAATAACGTA TERM 42 28528 - 28550 + G 71 -4.1 -4.82901 | gap 1, opp_overlap 28520 TAACGTAGTGACTCA TGCCACC-CC TCTA GGAGGTGCCA TTTTTATCAACACAG CpB0022 27521 - 29005 + | outer membrane protein 11 TERM 43 29263 - 29235 - g 77 -11.1 -2.86747 | opp_overlap 29231 29242, overlap 29232 29240 GAGGGACTATAATTA CTCAAGATGCTTC TCA GAAGCCTCTTGAA GTAGCTCCTTCTAGA CpB0023 29021 - 30358 + | outer membrane protein 5 TERM 44 30359 - 30379 + T 77 -9.1 -3.31515 | opp_overlap 30361, overlap 30362 AAATACCGATTTTAA TAGGGAACT GAG AGTTCCTTA TTGTAGAGAGTATTT TERM 45 30362 - 30376 + T 79 -8.6 -3.7941 | opp_overlap 30361, overlap 30359 TACCGATTTTAATAG GGAACT GAG AGTTCC TTATTGTAGAGAGTA TERM 46 30471 - 30503 + T 100 -17.3 -2.87211 | AATTTCTATAGTTCA TGGGGTTTCTTTTTT TAT AAAGAAGAAACCCCA TGTCTGACGAGACCT CpB0024 32713 - 30599 - | putative outer membrane protein TERM 47 31805 - 31774 - G 73 -7.4 -4.07687 | opp_overlap 31774 31794, overlap 31761 AGTTGTTGGGGAAAA TGTCAGCAACAGTT TCCC AACTATCGCTGAGA TGGTATTCTCCAGAA CpB0025 34409 - 32703 - | putative outer membrane protein TERM 48 34074 - 34090 + g 75 -8.7 -3.68619 | opp_overlap 34064 TAAAACCAGTAGCTG CTGCAGG GGG TCTGCAG TTTCCATAGCTTGGG maf 34981 - 34391 - | Maf-like protein CpB0027 36614 - 35010 - | putative ABC transporter protein ATPase TERM 49 35863 - 35875 + g 74 -6.9 -4.39166 | overlap 35864 TCGGCCTTTTCTTGC TCGCG AGA CGCGG TTTTCATCTCTACCA xerC 37595 - 36657 - | site-specific tyrosine recombinase XerC CpB0029 38603 - 37680 - | ribonuclease Z TERM 50 38667 - 38697 + r 77 -3.5 -5.44638 | opp_overlap 38667 ATACGCCACTACAAC TTTTGAATGACAA CTTTT TTATCATTTAAAA TTTTGTTTTTCTTAT CpB0030 39624 - 38758 - | hypothetical protein TERM 51 39678 - 39695 + r 80 -4.9 -5.25803 | opp_overlap 39691 39693, overlap 39692 ATGTATTCAAGGTCT GTTTGTA AATA TACAGAC TTTTTTATACGCATT TERM 52 39740 - 39693 - R 73 -8.9 -3.18571 | gap 1, opp_overlap 39678 39692 39695, overlap 39691 39695 GTTTGTAAATATACA GACT-TTTTTATACGCATTAAA TCTAC CTTAATGCGTATAAAAATAGTG ATTCTCAAGAGAACA TERM 53 39695 - 39738 + r 81 -10.8 -2.82623 | gap 1, opp_overlap 39695 39691 39693, overlap 39692 TTGTAAATATACAGA CT-TTTTTATACGCATTAA ATCTACC TTAATGCGTATAAAAATAG TGATTCTCAAGAGAA TERM 54 39738 - 39695 - R 87 -11.5 -3.15257 | gap 1, opp_overlap 39692 39695, overlap 39691 39693 TTGTAAATATACAGA CT-TTTTTATACGCATTAAA TCTAC CTTAATGCGTATAAAAATAG TGATTCTCAAGAGAA CpB0031 42233 - 39774 - | lon ATP-dependent proteinase CpB0032 43324 - 42539 - | hypothetical protein CpB0033 43754 - 43386 - | hypothetical protein TERM 55 44376 - 44392 + G 73 -3.6 -4.91511 | overlap 44378 ATTTCTCCTAATCCG CAGCTC TTTGC GAGCAG TTTTTCTGATAAGAT CpB0034 43890 - 44531 + | putative o-sialoglycoprotein endopeptidase TERM 56 44536 - 44548 + F 74 -3.5 -5.2166 | GTATTTTTTGATTTG TATTT TCT AAATA TTTTTTACATTGTTG rpsU 44710 - 44886 + | 30S ribosomal protein S21 CpB0036 44922 - 46100 + | heat shock protein dnaJ TERM 57 46383 - 46397 + G 77 -8.6 -4.06001 | ATAGGCTTGGGTTGT GATCTC TCT GAGATC TTTGCTTCGTTTCTA TERM 58 47230 - 47250 + G 75 -8.3 -3.86252 | opp_overlap 47230 47228 47226 CCCTTGTAGAAGAGA TGACTCGAG ATT CTGGAGTCA TTGTCTTTGGTGAGG CpB0037 46137 - 48173 + | 2-oxoisovalerate dehydrogenase alpha and beta subunit CpB0038 49456 - 48206 - | hypothetical protein TERM 59 48512 - 48522 + g 89 -6.8 -5.30155 | opp_overlap 48511 ATCTTTCAATGTAAT TGCG CGG CGCA TTTTTTCCTTAATGA CpB0039 51028 - 49565 - | hypothetical protein TERM 60 51348 - 51371 + GH 82 -6 -5.02074 | overlap 51343 51352 TGGTCGTTGTGGGTT TCAAGGAGAG CCTC CTCTTCTAGA TTTTTTAGGGCATCA CpB0040 51001 - 51798 + | hypothetical protein CpB0041 51791 - 52117 + | phosphotransferase system phosphohistidine-containing protein CpB0042 52118 - 53833 + | phosphoenolpyruvate-protein phosphotransferase CpB0043 54249 - 53959 - | hypothetical protein CpB0044 55642 - 54314 - | DNA polymerase III subunits gamma and tau TERM 61 55417 - 55404 - G 71 -2.3 -5.18726 | TCTTTACAAGAAAAA CACTG GTTG CAGGG CTCGCCATCCTCGCT TERM 62 55679 - 55692 + H 74 -2.4 -5.4505 | ATAGAAAGCTCATTT TCTC ATTTAA GAGA TTTTTTCTTGAAGAC TERM 63 55748 - 55805 + H 89 -11.7 -3.41073 | opp_overlap 55751 55754 55770, overlap 55747 55751 55760 55770 CTTTTCGCAGAGATG GAATGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGAATC TCTTTGAATAAAATA TERM 64 55802 - 55751 - H 95 -14.2 -3.15999 | opp_overlap 55747 55748 55751 55760 55770, overlap 55754 55770 TTCGCAGAGATGGAA TGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGA ATCTCTTTGAATAAA TERM 65 55751 - 55802 + H 84 -12 -2.56124 | opp_overlap 55751 55754 55770, overlap 55747 55748 55760 55770 TTCGCAGAGATGGAA TGATTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAATGA ATCTCTTTGAATAAA TERM 66 55799 - 55754 - H 100 -15.9 -2.78154 | opp_overlap 55747 55751 55748 55760 55770, overlap 55751 55770 GCAGAGATGGAATGA TTTTCCTTCTAAAATAGAATT TGTG AATTCTTCTTTAGAAGGAAAA TGAATCTCTTTGAAT CpB0045 55995 - 57344 + | hypothetical protein CpB0046 57402 - 58184 + | hypothetical protein TERM 67 59223 - 59208 - g 71 -3.2 -5.03314 | opp_overlap 59199 59209, overlap 59209 TGGAGTGGCAAAAAA TGCCTT TGAT AAGGCT TTTGGGGCATTAGAA TERM 68 59209 - 59222 + G 71 -6.7 -4.11484 | opp_overlap 59209 59208, overlap 59199 GGAGTGGCAAAAAAT GCCTT TGAT AAGGC TTTTGGGGCATTAGA CpB0047 58555 - 60762 + | HB3/HB4 fusion protein CpB0048 60951 - 61151 + | hypothetical protein TERM 69 61129 - 61158 + F 89 -8.7 -4.46155 | opp_overlap 61129 61127 AGGTAAAACTACAGA CTTCCTCTCATAA ATGG TTGTGAGACGAAG TTTTCTAAGTGTGTG TERM 70 62659 - 62708 + G 91 -13 -2.7419 | gap 1, opp_overlap 62659, overlap 62680 GGAAGCTTAGCAGAA GCTGCAGCTCAAGCTATAGGTGC AGATA GCCTCTATTGCTTG-GTTGCAGC TCATTACCATGATAT TERM 71 62708 - 62659 - g 71 -8.6 -3.42574 | gap 1, opp_overlap 62659 62680 GGAAGCTTAGCAGAA GCTGCAGCTCAAGCTATAGGTGC AGATA GCCTCTATTGCTTG-GTTGCAGC TCATTACCATGATAT CpB0049 61183 - 63300 + | hypothetical protein CpB0050 63792 - 63310 - | hypothetical protein TERM 72 63398 - 63387 - G 90 -4.4 -5.59879 | overlap 63396 TAGAAAGAGAAAAAA GCAT TAGA ATGC CAAGAAGCAGTAGCG CpB0051 64309 - 63992 - | hypothetical protein CpB0052 64329 - 64610 + | hypothetical protein CpB0053 65501 - 64797 - | porphobilinogen deaminase CpB0054 66840 - 65479 - | DNA repair protein RadA TERM 73 65872 - 65854 - GR 90 -7.4 -5.08483 | overlap 65856 TAAAAGTAAAGAAAA GCGATTCG GAT CGAATCCC GCAGTCTTCCTTACT rnc 67519 - 66806 - | ribonuclease III CpB0056 67625 - 68089 + | hypothetical protein TERM 74 68814 - 68836 + G 77 -4.8 -5.011 | opp_overlap 68804 68813, overlap 68816 AGAAACTGCAAAAGT CCTCGCAG GTAATGG CTGCGAAG TTTTCTTGTTTCAGT TERM 75 69740 - 69724 - g 72 -6.5 -4.28188 | CACGTAGAAGATAAA GACGCTA TTA TTGCGTC AGCGTTGATTGCAGA CpB0057 68449 - 70245 + | phosphomannomutase TERM 76 70329 - 70313 - f 75 -8 -3.78934 | opp_overlap 70313 70312 TCTCCTTCAGAATAA GGCCTT CTTTC AAGGCC ATTGTTGTATCCGAA CpB0058 70430 - 71053 + | manganese superoxide dismutase precursor TERM 77 71634 - 71647 + G 71 -3.1 -4.93877 | CTGGAGGCGCACGTA TGCAG GAAT CTGTA TTTTCTTTAATGCAG CpB0059 71135 - 72061 + | acetyl-CoA carboxylase subunit beta TERM 78 72135 - 72156 + G 70 -9.5 -2.78384 | ATTTTGTGAATTGGA TTCAGGAGG AGAA CTTCCTGAA TATACTACGCCAGGA TERM 79 72262 - 72232 - g 76 -9.9 -3.28712 | gap 1, overlap 72233 CTGCTGCCTGGACAA CGTGCTTTGATCCC TACC GGAATCAAAGCA-G AAATTCCCGAAGGGT TERM 80 72262 - 72233 - g 71 -10.1 -2.57132 | overlap 72232 TGCTGCCTGGACAAC GTGCTTTGATCCC TACC GGAATCAAAGCAG AAATTCCCGAAGGGT dut 72112 - 72549 + | deoxyuridine 5'-triphosphate nucleotidohydrolase fruA 72527 - 73027 + | PTS fructose-specific enzyme IIBC component ptsN 73030 - 73707 + | phosphotransferase system enzyme II TERM 81 74653 - 74643 - g 73 -5.4 -4.73092 | ACAATGTAAAAGAAA GTCT GTA AGAC AAGCTCTTGAAGCTC mst101 73804 - 75189 + | hypothetical protein CpB0064 75468 - 75728 + | hypothetical protein TERM 82 75716 - 75737 + F 73 -7.3 -3.95787 | overlap 75724 TATAGTTTTACTTTG GGAATCTTC TTAG GAAGATGCC TTTCTACGTCTAATA CpB0065 75842 - 76075 + | hypothetical protein TERM 83 76325 - 76339 + F 70 -2.2 -5.27938 | overlap 76327 TATTTTCTAAGAGTT TTTTAA TTA TTAAGA TTTTTATTTAAAAAT CpB0066 76399 - 78150 + | hypothetical protein TERM 84 79573 - 79583 + G 76 -6.8 -4.55826 | opp_overlap 79564, overlap 79571 ACAAATCGTCCAGGC TGCC GGC GGCA TTTTCGTGTTTTAAG CpB0067 78421 - 80154 + | hypothetical protein TERM 85 80332 - 80361 + F 72 -8.1 -3.41738 | opp_overlap 80334, overlap 80330 80334 80339 80360 TCTCGTTGACATTAA AACCAAATAAAAA CATG TTTTTATTTGGTC TATTCTGTTAAAATA TERM 86 80359 - 80334 - f 100 -10.7 -4.34402 | opp_overlap 80332 80330 80334 80339 TCGTTGACATTAAAA CCAAATAAAAA CATG TTTTTATTTGG TCTATTCTGTTAAAA TERM 87 80334 - 80359 + F 86 -10.7 -3.27382 | opp_overlap 80334, overlap 80332 80330 80339 TCGTTGACATTAAAA CCAAATAAAAA CATG TTTTTATTTGG TCTATTCTGTTAAAA TERM 88 80842 - 80803 - g 71 -2.1 -5.10154 | overlap 80808 ATGGAAAAGGAAAAA GAAGATCCGGAGCATTT TGGAAG AACCGCTACGGATATCC CAATGAGATCTGCAT CpB0068 80449 - 81552 + | hypothetical protein TERM 89 81713 - 81692 - T 84 -6.7 -5.12068 | opp_overlap 81691 TATACCGAATAAAAA TATCTAGAA GAGG CTCTAGATA CATCTTTGGAAATAG TERM 90 81784 - 81815 + T 80 -10.4 -3.13164 | opp_overlap 81784 81789, overlap 81782 81780 81789 GAGGAGAGATCAAAA GAAAATGTTCCA AGATGTTA TGGAACATTTTC TCTCTAGTTTATTTT TERM 91 81815 - 81784 - T 100 -10.4 -4.40237 | opp_overlap 81784 81782 81780 81789, overlap 81789 GAGGAGAGATCAAAA GAAAATGTTCCA AGATGTTA TGGAACATTTTC TCTCTAGTTTATTTT TERM 92 81789 - 81810 + T 70 -4.5 -4.65494 | opp_overlap 81784 81789, overlap 81784 81782 81780 GAGATCAAAAGAAAA TGTTCCA AGATGTTA TGGAACA TTTTCTCTCTAGTTT TERM 93 81810 - 81789 - T 76 -4.5 -5.16132 | opp_overlap 81789 81784 81782 81780, overlap 81784 GAGATCAAAAGAAAA TGTTCCA AGATGTTA TGGAACA TTTTCTCTCTAGTTT CpB0069 82399 - 81824 - | hypothetical protein TERM 94 82911 - 82899 - H 74 -9.1 -3.02043 | opp_overlap 82898 AACTTTGTTGTAATA GAGCG GGG CGCTC CTAGTCTGCCTTCTC CpB0070 83022 - 84584 + | hypothetical protein CpB0071 85539 - 85090 - | hypothetical protein CpB0072 86579 - 85548 - | hypothetical protein infA 86850 - 87071 + | translation initiation factor IF-1 tuf 87268 - 88452 + | elongation factor Tu TERM 95 88491 - 88456 - f 82 -7.6 -4.62872 | opp_overlap 88462, overlap 88457 ATCAATGCTTAAAAA TGAATTTCGCGATGAT TTTC ATCATCGCGATTTTCT GGGTGTGTAGCTTAG TERM 96 88490 - 88457 - f 87 -11.1 -3.37 | opp_overlap 88462, overlap 88456 TCAATGCTTAAAAAT GAATTTCGCGATGAT TTTC ATCATCGCGATTTTC TGGGTGTGTAGCTTA TERM 97 88462 - 88485 + F 100 -14 -4.46155 | opp_overlap 88457 88456 GCTTAAAAATGAATT TCGCGATGAT TTTC ATCATCGCGA TTTTCTGGGTGTGTA secE 88596 - 88847 + | preprotein translocase subunit SecE nusG 88852 - 89400 + | transcription antitermination protein NusG rplK 89507 - 89932 + | 50S ribosomal protein L11 rplA 89959 - 90657 + | 50S ribosomal protein L1 TERM 98 90808 - 90866 + G 93 -12 -3.58269 | opp_overlap 90784 90793 90831 90840, overlap 90798 90809 90831 TCACTTTCTGGAGTT TCTGCAGAATTTGAAGTTTTAAAGAAGA GAA TCTTCTTTAAAGCTATAGAAGCTGCAGG TTTAGAGGTAGATTG TERM 99 90809 - 90865 + G 93 -13.3 -2.7464 | opp_overlap 90784 90793 90831 90840, overlap 90798 90808 90831 CACTTTCTGGAGTTT CTGCAGAATTTGAAGTTTTAAAGAAGA GAA TCTTCTTTAAAGCTATAGAAGCTGCAG GTTTAGAGGTAGATT rplJ 90673 - 91185 + | 50S ribosomal protein L10 rplL 91229 - 91618 + | 50S ribosomal protein L7/L12 TERM 100 91625 - 91654 + F 100 -13.9 -5.52079 | opp_overlap 91630 GGACTGTAATTTGTA GAAAAGAAAAATC GAAA GATTTTTCTTTTC TTTTTCTTTTCATGT TERM 101 91649 - 91630 - f 83 -8 -4.4017 | opp_overlap 91625 GTAATTTGTAGAAAA GAAAAATC GAAA GATTTTTC TTTTCTTTTTCTTTT TERM 102 91704 - 91678 - f 76 -3.6 -5.28176 | overlap 91679 TTCATGTATAAAAAA CCGAATGCTCCC TTT AGAAGCATACGT AGGCTTAATTTAGGG TERM 103 91703 - 91679 - f 70 -7.1 -3.76182 | overlap 91678 TCATGTATAAAAAAC CGAATGCTCCC TTT AGAAGCATACG TAGGCTTAATTTAGG TERM 104 91813 - 91793 - g 95 -4.7 -5.76949 | CAGTGTTAAAAAAAA GGAAGATAT CCC AGACCTTCC AAATCTTATCGAAAT rpoB 91755 - 95513 + | DNA-directed RNA polymerase subunit beta TERM 105 95742 - 95724 - g 77 -4.6 -5.0133 | TATTTTGTGAAAAAA TCTTTGGT CCT ACTAAAGA TTGGGAATGTTGCTG TERM 106 96187 - 96173 - g 71 -2.1 -5.10933 | TTACGCAAAACAAAA TCTCA GCAAG CGAGA ATGAAGTTAGCCAAA TERM 107 96565 - 96550 - g 75 -3.2 -5.22039 | opp_overlap 96561, overlap 96552 GTTAAAGGGAAAAAA TGGACG CTTC CGTCAA AATCTTTTAGGAAAA CpB0082 95537 - 99718 + | DNA-directed RNA polymerase subunit beta' TERM 108 99733 - 99774 + F 93 -8.9 -4.81831 | opp_overlap 99743 99761, overlap 99733 99734 ACTAGGTGACACAGT CTTTTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGAA TGTTTTTTTTTGTTA TERM 109 99733 - 99776 + F 95 -4.9 -6.36459 | gap 2, opp_overlap 99743 99761, overlap 99733 99734 ACTAGGTGACACAGT C-TT-TTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGAATG TTTTTTTTTGTTAAC TERM 110 99734 - 99773 + F 93 -12.4 -3.45438 | opp_overlap 99743 99761, overlap 99733 99733 CTAGGTGACACAGTC TTTTATCAAGGAGGTTAT GTTT ACAACCTCCTTGATAGGA ATGTTTTTTTTTGTT TERM 111 99764 - 99743 - f 74 -9.5 -3.14683 | opp_overlap 99734 99733 99733, overlap 99761 ACAGTCTTTTATCAA GGAGGTTAT GTTT ACAACCTCC TTGATAGGAATGTTT CpB0083 99827 - 100810 + | transaldolase B CpB0084 100869 - 101249 + | putative predied ferredoxin TERM 112 101280 - 101290 + T 71 -5.4 -4.59853 | TTTTCGTTTTGCAGA GCTT CCA AAGC TTTTTCAAGGATTGC CpB0085 102001 - 101258 - | hypothetical protein TERM 113 102006 - 101996 - G 93 -4 -5.80727 | opp_overlap 101996 AAAAAGAATAAAAAA TTTC ATA GAAA ATTATGTAGTTAGTT TERM 114 102112 - 102095 - H 70 -4.1 -4.82901 | opp_overlap 102095 102097, overlap 102097 TCGTTTTCAGAAAAA TATTCCC AATA GGGAATC TTTGGATCTAGAAGA TERM 115 102382 - 102367 - H 75 -4.8 -4.86731 | overlap 102362 CTTTTTTAAAGAAAA TTCTTT TCTA AAAGAA TAAGCGGTAAAATAT TERM 116 102939 - 102929 - g 73 -5.4 -4.70613 | AAAAGTTGAAGAAAA GAAC TGG GTTC TGGATCTTAGTTCCT HrpE 102399 - 103025 + | V-type ATP synthase subunit E CpB0087 103074 - 103874 + | hypothetical protein CpB0088 103868 - 105643 + | V-type ATP synthase subunit A CpB0089 105648 - 106964 + | V-type ATP synthase subunit B CpB0090 106949 - 107578 + | V-type ATP synthase subunit D TERM 117 107885 - 107898 + G 70 -3.7 -4.89477 | opp_overlap 107886, overlap 107886 AGATTGTTAGAGTCA AGCCC CTAG GGGCA TTTTCTTCTTCAGAG ntpI 107569 - 109551 + | V-type ATP synthase subunit I TERM 118 110017 - 110028 + G 71 -3 -5.04356 | TTATGCAGCGATTGG GATT GTCG AATC TTTTTCATTGTTTGC CpB0092 109646 - 110071 + | V-type ATP synthase subunit K TERM 119 110353 - 110337 - gf 89 -9.5 -4.09108 | GGCAAGGTAGAGAAA TTGACCT ATG AGGTCAA TCAAAGTGCGGGGTA CpB0093 109950 - 110513 + | hypothetical protein TERM 120 111361 - 111320 - g 100 -16.8 -3.69332 | opp_overlap 111333 CAACAAGACCCGAAA CTTCATTAGGAGACACTG GGATCG CAGTGTCTCCTAACGACG AGCGCTATGCATCAT TERM 121 112579 - 112595 + G 75 -2.3 -5.28983 | GGTATTGATGAAGAC TCTTTAG GGC TTGAAGA TTTTTATATTTTAGA valS 110647 - 113469 + | valyl-tRNA synthetase TERM 122 113631 - 113615 - g 70 -5.9 -4.38154 | opp_overlap 113615 113616 AGATCTTGCAGAAAA TCCTCTT TTG AAAAGGA GGTTTTTACGAGAGG TERM 123 113616 - 113633 + G 74 -6.3 -4.56597 | opp_overlap 113615, overlap 113615 GATCTTGCAGAAAAT CCTCTTT TGAA AAGGAGG TTTTTACGAGAGGCA pknD 113490 - 116288 + | serine/threonine-protein kinase CpB0096 121809 - 116329 - | excinuclease ABC subunit A TERM 124 117450 - 117415 - G 86 -9.8 -3.99806 | gap 1, overlap 117416 117448 AGAATCCATGAGAAA TCCTCCTTGAGGTCCAG ATC CTGGACC-CAAGAAGAT CGCGTGATCGGCATG TERM 125 117449 - 117416 - G 100 -13.3 -2.99161 | gap 1, overlap 117415 117448 GAATCCATGAGAAAT CCTCCTTGAGGTCCAG ATC CTGGACC-CAAGAAGA TCGCGTGATCGGCAT TERM 126 119347 - 119358 + g 70 -5.8 -4.24404 | opp_overlap 119346 119347 AGAAGCAAAGAGAAG CTCG TGAG CGAG TTTTAGCCTTTGAAT TERM 127 120989 - 120979 - G 70 -5.4 -4.46514 | ATCTATGGAAATAAA GATC CCG GATC CTTGACAAAGAGAGC TERM 128 121014 - 120999 - G 78 -9 -3.86897 | CGGATCCTTGACAAA GAGAGC AACG GCTCTC CAGGGCATGAGGAGA TERM 129 122380 - 122391 + G 70 -5.8 -4.2461 | overlap 122371 122375 TCTCTCTATCCTAAG GGGA TATT TCCC TTTGTTCCTGAGGGT CpB0097 122050 - 123504 + | pyruvate kinase TERM 130 123613 - 123625 + T 87 -6.3 -5.51046 | TCAGGGCCCCTTCGA CTTCA CCT TGAAG TTTTTTCTCTCTTTA CpB0098 124986 - 123598 - | lipid A biosynthesis lauroyl acyltransferase TERM 131 124236 - 124247 + g 70 -5.8 -4.40804 | opp_overlap 124236 CATTAACAGCAATCA CAGG AAAA CCTG TTTTATAAGCTAATA CpB0099 125338 - 125039 - | hypothetical protein CpB0100 126651 - 125374 - | hypothetical protein TERM 132 125587 - 125609 + g 71 -2 -5.21709 | TTGGGCTATAATAGT CTGAAGAAAA GTA TTTTCTAAAG TTTTTTCATCTAAAA TERM 133 125872 - 125885 + g 79 -6.7 -4.59773 | opp_overlap 125871 TAAATTTAAATTTAG GGGAA TGCA TTCCC TTTTTAAAAATAAAA CpB0101 127472 - 126633 - | hypothetical protein TERM 134 126696 - 126707 + g 70 -7.2 -3.75937 | opp_overlap 126692 126695 AGGGGAAAGAATACT GCGG AGTA CCGC TTTGAATCTATCTAT TERM 135 127893 - 127915 + G 75 -2.1 -5.27769 | gap 1 AGGAAATATTTTCGG CACCTT-ATT AGGT AGTGAAGGTG TTTTTGCTTTTTTCT CpB0102 127618 - 128964 + | cytochrome oxidase chain I CpB0103 128975 - 130009 + | cytochrome oxidase chain II TERM 136 130152 - 130128 - T 75 -8.5 -3.45405 | opp_overlap 130128 130122, overlap 130126 130122 TCTAGAAAATGAAGA GCTTCCATTGG AAT CCTTTGGAAGC TATCATTATACTTCG TERM 137 130128 - 130152 + T 71 -8.5 -2.9953 | opp_overlap 130126 130122 130128, overlap 130122 TCTAGAAAATGAAGA GCTTCCATTGG AAT CCTTTGGAAGC TATCATTATACTTCG CpB0104 131370 - 130168 - | hypothetical protein TERM 138 130884 - 130900 + g 95 -8.1 -5.02074 | opp_overlap 130896 ACAGCTCGATGGGTC CTTTGTT AGC AACAAAG TTTTTTGCAACATAG CpB0105 132375 - 131521 - | hypothetical protein psiH 132574 - 133872 + | phosphate starvation-inducible protein CpB0107 134621 - 133884 - | hypothetical protein TERM 139 134547 - 134565 + g 89 -3.8 -5.67967 | TGATTGATTTAGTGC CCAGGCAA AGA TTTTCTGG TTTTTTTCTGCTGGT CpB0108 135352 - 134795 - | hypothetical protein CpB0109 135601 - 135446 - | hypothetical protein TERM 140 136672 - 136688 + G 70 -5.1 -4.57341 | opp_overlap 136672 GGATTAGTGTACGAA GGTACAA AAG TTGTCCC TTTTTCAACAGCATT TERM 141 137768 - 137736 - g 73 -7.1 -4.11216 | overlap 137739 GCCTTATGCCCAAAA TCATTATCCTTTTGA AAA TCAAAAGGAAACCGA AGAGGCATTTCCTGC ileS 136150 - 139281 + | isoleucyl-tRNA synthetase TERM 142 139307 - 139331 + T 75 -5.1 -5.00846 | opp_overlap 139307, overlap 139304 139301 GAAACAACTGAAAAA CCATAAGAA TGGTTAT TTCTTGTGG TTTTTCTCCTCTTTC TERM 143 139318 - 139307 - T 73 -4.4 -4.8384 | opp_overlap 139304 139301 139307 GAAACAACTGAAAAA CCAT AAGA ATGG TTATTTCTTGTGGTT CpB0111 141229 - 139319 - | signal peptidase I CpB0112 142232 - 141426 - | hypothetical protein TERM 144 141844 - 141831 - G 71 -2.4 -5.19879 | GTTTAAAGAGAAAAA CTGA GAACCT TCAG AAGAGAGCGAAACAA rpmE2 142262 - 142591 + | 50S ribosomal protein L31 type B TERM 145 142621 - 142652 + F 100 -17.4 -5.60993 | opp_overlap 142621 TTCCCATTTATAAAA CCCATTCTCAGGCT CTCA AGCCCGAGAATGGG TTTTTTTGTGAGGGC TERM 146 142652 - 142621 - f 100 -19.6 -4.42386 | opp_overlap 142621 TTCCCATTTATAAAA CCCATTCTCAGGCT CTCA AGCCCGAGAATGGG TTTTTTTGTGAGGGC TERM 147 142899 - 142885 - gf 80 -3.6 -5.29846 | opp_overlap 142885 142896, overlap 142873 142879 AAGTCGAAATAAAAA TTTCAA ATC CTGAAA TTTTTTCTAATTCTA TERM 148 142885 - 142899 + GF 76 -2.9 -5.39755 | opp_overlap 142873 142879 142885, overlap 142896 AAGTCGAAATAAAAA TTTCA AATCC TGAAA TTTTTTCTAATTCTA TERM 149 143571 - 143586 + GF 77 -9 -3.52652 | opp_overlap 143566 143571 143573, overlap 143578 GCGGTGAGAATCACA CACCTG CCTA CAGGTG TTGTAGTTACATGCC TERM 150 143586 - 143571 - gf 71 -9 -2.96274 | opp_overlap 143571 143578, overlap 143566 143573 GCGGTGAGAATCACA CACCTG CCTA CAGGTG TTGTAGTTACATGCC TERM 151 143699 - 143685 - gf 73 -4.2 -4.84529 | opp_overlap 143685 GCAGAAATGCAAAAA CGCC ATAACGA GGCG TCTGCTATGCGTTCT prfA 142830 - 143903 + | peptide chain release factor 1 TERM 152 144502 - 144517 + GF 77 -9 -3.66028 | overlap 144515 GAAGTGCGTTGTTAC GAGCCT TGGA AGGCTC TTGTTGGAGGTTCTA CpB0115 143869 - 144759 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase ffh 144774 - 146120 + | signal recognition particle chain rpsP 146111 - 146470 + | 30S ribosomal protein S16 TERM 153 147345 - 147321 - g 70 -5.8 -4.30987 | AGCTGCGAGAATAAA TTTTGTCTTC CTCAT GAAGGCAAAA CCATATTCTGGTTAC trmD 146484 - 147569 + | fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein rplS 147597 - 147962 + | 50S ribosomal protein L19 rnhB 148018 - 148662 + | ribonuclease HII gmk 148659 - 149276 + | guanylate kinase CpB0122 149273 - 149566 + | hypothetical protein TERM 154 150241 - 150260 + G 76 -7.9 -4.19177 | ATAGAACATGTCAGG TCTCGAG CCATTA CTCGAGA TTTATCTTGGGGGAT CpB0123 149566 - 151221 + | methionyl-tRNA synthetase CpB0124 153464 - 151266 - | exodeoxyribonuclease V 67K chain TERM 155 152638 - 152677 + g 84 -11 -3.72989 | opp_overlap 152647 AGTGTCCCAGAAATG TCTTGAATATGTAAAAGC TTAC GCTTTTGCATATTGAGGA TTTGCGTATCGATTT TERM 156 152824 - 152808 - G 88 -12.3 -2.71263 | AAGTTCTTCTAAGGA GTGCTGG ATA CCAGCAC ATAGGCGACTTTCAG TERM 157 154488 - 154504 + G 75 -2.3 -5.28778 | GAGATATTAGAAATG CTCTT GATAACG AAGAG TTTTTTATGACTCAT CpB0125 154226 - 155566 + | hypothetical protein CpB0126 155591 - 156103 + | hypothetical protein CpB0127 156316 - 156164 - | hypothetical protein TERM 158 156311 - 156330 + Gg 70 -2.8 -5.05442 | overlap 156307 ATTAGTTATTGGTAT TCTCATAC TATT GCATGGGA TTATTTTTTTTCTCT TERM 159 157433 - 157413 - gR 100 -14.1 -3.06087 | opp_overlap 157413 157414, overlap 157423 AATAGATTTGCAAGA CGCTCAAAG AGC CTTTGAGCG TCAAAGTCAGGAGTT TERM 160 157506 - 157486 - gR 75 -9.8 -2.66034 | opp_overlap 157489, overlap 157489 ACAAAGGTGAGACTA GAAGCACT TCAAC AGTGCTTC TCGGATCTTAGGGAG TERM 161 157635 - 157624 - gR 78 -5.8 -4.8048 | opp_overlap 157624, overlap 157632 GTGCGATATCAAAAA GAGC AAAG GCTC TATTGGGAAACAATA CpB0128 156304 - 158583 + | hypothetical protein CpB0129 159638 - 158622 - | putative cationic amino acid transporter TERM 162 159486 - 159473 - G 70 -5.3 -4.44915 | CAATCAGGGAGAAAA TACCA AAAA TGGTA TAACGGGTAAGTACA CpB0130 159772 - 160551 + | biotin--[acetyl-CoA-carboxylase] ligase CpB0131 161740 - 160556 - | hypothetical protein TERM 163 161295 - 161307 + g 87 -4.9 -5.57054 | opp_overlap 161306, overlap 161304 161306 ATTAGGAAATCTGGA TCTTT AAG AAAGA TTTTTTTCCATTCTT TERM 164 161338 - 161309 - G 70 -9.5 -2.80512 | opp_overlap 161306 161304, overlap 161308 161306 ATCTTTAAGAAAGAT TTTTTTCCATTCT TCGA AGGATGGAAAAAA GAGCTCATTTTTTAG TERM 165 161964 - 161954 - H 70 -4 -5.00616 | opp_overlap 161954 TCGTCTCTGAAAAAA GAAA GAT TTTC TTTAAGTCTTGCAAT TERM 166 162606 - 162616 + G 73 -5.4 -4.69027 | overlap 162596 GGATAGAGAGAGTCT CACT TTT AGTG TTTTTGAGTGCATTT CpB0132 162056 - 163078 + | hypothetical protein TERM 167 163573 - 163584 + G 78 -2.2 -5.52347 | GGAAGCGGATCGTTT GTCT CGAG AGGC TTTTTTGATTTTATT CpB0133 163082 - 164059 + | hypothetical protein CpB0134 164829 - 164056 - | hypothetical protein TERM 168 164926 - 164897 - R 100 -13.8 -5.27938 | ATTCCCAAAGAAAAA GGTCTCTTTTCT TTAGTT AGAAAAGAGACC TCATGGAAAATTGTT groEL 166593 - 164959 - | chaperonin GroEL TERM 169 166338 - 166352 + g 70 -5.7 -4.25848 | overlap 166342 166343 TTGTAGTTCCGTCGC CTGCT TTGTC AGCAG TTTTGCTGGCGACTT groES 166943 - 166635 - | co-chaperonin GroES TERM 170 167058 - 167028 - R 89 -10.7 -3.61398 | overlap 167044 TTTTTTGTGCAATAA TTTTAGCACTCAA TAATT TTAAGTGCTAAAA ACTCAATCTTCTGAA CpB0137 168896 - 167061 - | oligoendopeptidase F TERM 171 167235 - 167248 + g 73 -3.9 -5.00616 | overlap 167225 TTCGAGAGCCCCTGG TTCTT GTGT AAGAA TTTTTTCAGCAAAGG TERM 172 167414 - 167438 + g 88 -10.8 -3.84406 | opp_overlap 167418 CGTAAGTTGCGGAGA GGAACTCTTC AGTAA GAGGAGTTCC TTGTTCTGCTGCAGA TERM 173 168663 - 168674 + g 82 -3 -5.52384 | TTGGTCTAATTTTCG TTCT ACAG AGAA TTTTTTTGATAAAAG TERM 174 168986 - 168968 - R 71 -3.1 -5.08088 | opp_overlap 168969, overlap 168969 AATCTTTAAGAAAAA GCCAAGA ACAAA TCTTGGT TTAAAGATTAGAAGG ybgI 169749 - 168994 - | YbgI TERM 175 170223 - 170201 - R 77 -5.6 -4.93898 | opp_overlap 170201 AGACTATTAGAAAAA TCTTTGAGCC GAA GAGTCAAAGA TTTTAATCAGGCTAT CpB0139 171514 - 170192 - | glutamate-1-semialdehyde aminotransferase CpB0140 172151 - 171585 - | hypothetical protein CpB0141 172605 - 172165 - | hypothetical protein CpB0142 173297 - 172602 - | ribose-5-phosphate isomerase A CpB0143 173586 - 173308 - | hypothetical protein TERM 176 173546 - 173528 - G 71 -3.2 -5.08088 | opp_overlap 173532, overlap 173529 173532 AAGTGCGAACAAAAA TTAAGAAT GGA ATTCTTAG TAGACAATAGTTGGA TERM 177 173660 - 173700 + r 85 -9 -4.14764 | opp_overlap 173663, overlap 173663 TAACGTACATAAAGG GAAGAGCTGGTTGGATCT ATAGA GGTTCCAACCAGCTCTGG TTTCATTATTTCCAA TERM 178 173697 - 173663 - R 100 -14.4 -3.35695 | opp_overlap 173663 173660 CGTACATAAAGGGAA GAGCTGGTTGGATC TATAGAG GTTCCAACCAGCTC TGGTTTCATTATTTC TERM 179 173663 - 173697 + r 100 -15.1 -3.08658 | opp_overlap 173663, overlap 173660 CGTACATAAAGGGAA GAGCTGGTTGGATCT ATAGA GGTTCCAACCAGCTC TGGTTTCATTATTTC CpB0144 174830 - 173706 - | hypothetical protein TERM 180 173813 - 173803 - G 76 -6.8 -4.4773 | TCACATGAAGCAAAA CCAC ACT GTGG ACTTAGAGAGAGTCT TERM 181 174726 - 174739 + g 74 -6.7 -4.24562 | opp_overlap 174724 174726 ATCTAGAGAAATAGA GCCTT CTTT AAGGC TTTCTCTAGTTTTTT TERM 182 175127 - 175147 + H 86 -4.9 -5.59879 | opp_overlap 175130 TGATAATTTCTCAGG TAATTAAAA ATC TTTTAATTG TTTTTTCTGTTTATG TERM 183 175440 - 175428 - H 72 -2.7 -5.30348 | opp_overlap 175429, overlap 175429 ATGTAATAAGAAAAA CCTTT TTA AAAAG TGCTTGGGGTGAATT TERM 184 176468 - 176495 + G 73 -5.6 -4.48713 | gap 1 TCAGCCTATTTTTGT GACAG-AGCCTTC TTT GGAGGATGCTGTC TTTATTCTTCGTGGA CpB0145 175449 - 178058 + | ClpB TERM 185 178382 - 178372 - g 78 -4 -5.14645 | ATAATGTAACAAAAA CTTA TGA TAAG AAAGCTTCTGTTATA CpB0146 178299 - 179867 + | hypothetical protein CpB0147 180108 - 180593 + | hypothetical protein CpB0148 180720 - 181169 + | hypothetical protein TERM 186 181231 - 181261 + F 83 -6.9 -4.68209 | opp_overlap 181234 181237, overlap 181234 CCTTCCGTTGTTTTA AAAGAACCTCAAG AATAA CTAGAGGTTCTTG TTTGTTTATTGCAAT TERM 187 181234 - 181258 + F 89 -8.6 -4.43668 | opp_overlap 181234 181237, overlap 181231 TCCGTTGTTTTAAAA GAACCTCAAG AATAA CTAGAGGTTC TTGTTTGTTTATTGC TERM 188 181258 - 181234 - f 82 -8.6 -4.07568 | opp_overlap 181234 181231, overlap 181237 TCCGTTGTTTTAAAA GAACCTCAAG AATAA CTAGAGGTTC TTGTTTGTTTATTGC CpB0149 181341 - 183200 + | protein kinase TERM 189 183409 - 183421 + G 71 -3.3 -5.06585 | CACGTCTCGGAGATC GTCCC TCT GGAAC TTTTTCTGTGGTTTC TERM 190 184664 - 184648 - g 72 -8 -3.78067 | AAGATTTAATGCAAA TTCCCG GGATA CGGGAA CGCTCTGCAAGAAAT ligA 183210 - 185198 + | NAD-dependent DNA ligase LigA TERM 191 186946 - 186930 - g 84 -2.9 -5.63504 | AATCCTACAAAAAAA CGAAGAC GAA GTCCTTG CATTGAAGAGTACAA TERM 192 189412 - 189455 + G 83 -11.2 -3.53343 | opp_overlap 189412, overlap 189420 AAGTATATGCAGATA CTTTTAGATGCACCAGTCAG TCTA TTGTATGGTGCATTTAAAAG TTTCAAAAACGAATT CpB0151 185329 - 189942 + | hypothetical protein TERM 193 190011 - 190040 + T 93 -5.8 -5.77853 | gap 1, opp_overlap 190011 CAACTGCAATGAAAA CCATAGAG-GACT AGGAA AGGCTCTCTATGG TTTTTTTTCACAATT TERM 194 190040 - 190011 - T 72 -5.8 -4.43309 | gap 1, opp_overlap 190011 CAACTGCAATGAAAA CCATAGAG-GACT AGGAA AGGCTCTCTATGG TTTTTTTTCACAATT CpB0152 191637 - 190117 - | pentachlorophenol 4-monooxygenase TERM 195 191697 - 191687 - R 71 -5.4 -4.52047 | overlap 191679 191677 CATTATAGGATAAAA TCCT AGG AGGA ATCAAGAAACGAATT TERM 196 191805 - 191777 - R 83 -10.4 -3.29511 | opp_overlap 191775 TGTAGTGTTCTAGAA CCGTTGTACCTT GAATT AAGGTACAACTG AAATTTAAAGTGTTC CpB0153 192760 - 191810 - | hypothetical protein TERM 197 192853 - 192863 + H 82 -5.4 -5.21709 | opp_overlap 192853 TGAAGGAAAAACGGA CAAG ACT CTTG TTTTTTCCTCTGGGG TERM 198 194491 - 194521 + G 84 -9.8 -3.75863 | overlap 194494 GTAGATCTTTACATT GGAGGTGCAGAACA CGC TGTTCTTCATCTTC TTTACTCGAGATTTT TERM 199 194494 - 194518 + G 74 -7.9 -4.0031 | overlap 194491 GATCTTTACATTGGA GGTGCAGAACA CGC TGTTCTTCATC TTCTTTACTCGAGAT leuS 192928 - 195390 + | leucyl-tRNA synthetase TERM 200 195394 - 195411 + G 74 -4.9 -4.7889 | gap 1 TTTGTCCTATGATGC TACGA-GG TGT CCATCGTA TTTTTAAGTGTTTCT TERM 201 195944 - 195956 + G 71 -3.4 -5.06414 | TAAAAACTATTTCTC TCCA GTAGA TGGA TTTTTATTACAGGAC CpB0155 195387 - 196700 + | 3-deoxy-D-manno-octulosonic-acid transferase CpB0156 197186 - 196980 - | hypothetical protein CpB0157 197804 - 197262 - | kdtA KDO-transferase CpB0158 198219 - 197791 - | hypothetical protein CpB0159 198926 - 198387 - | KDO-transferase TERM 202 198626 - 198638 + g 84 -5.5 -5.40004 | AAAAATAAATGAAGG CCCAT ACA GTGGG TTTTTTAGTTTCATG CpB0160 199268 - 198960 - | hypothetical protein CpB0161 201198 - 199564 - | diphosphate--fructose-6-phosphate 1-phosphotransferase cinI 202029 - 201202 - | cinnamoyl ester hydrolase CpB0163 203235 - 202207 - | hypothetical protein CpB0164 203433 - 203804 + | hypothetical protein CpB0165 203851 - 204408 + | hypothetical protein CpB0166 204405 - 204992 + | hypothetical protein CpB0167 205037 - 205372 + | hypothetical protein CpB0168 205713 - 205381 - | hypothetical protein CpB0169 206048 - 205821 - | hypothetical protein CpB0170 206908 - 206114 - | hypothetical protein TERM 203 206819 - 206808 - G 71 -4.4 -4.81863 | opp_overlap 206798 AAAGCGATAACAAAA GAAG TTAT CTTC ACTAATCTACTTTCA CpB0171 207058 - 207213 + | hypothetical protein TERM 204 207287 - 207305 + T 91 -5.2 -5.81032 | opp_overlap 207287 TCGACTCTCTTGAAA GCTTCTTC TCT GGAGACGC TTTTTTTTAACATTA CpB0172 208433 - 207429 - | hypothetical protein CpB0173 209842 - 208553 - | GMP synthase TERM 205 208719 - 208737 + g 89 -11.8 -3.35706 | opp_overlap 208718 TCTACAGCACGTAAT GCTATGGT ATA ACCATAGC TTCTACAATCTCCTT CpB0174 210584 - 209844 - | guaB gene for inosine 5-monophosphase dehydrogenase subunit TERM 206 209921 - 209935 + g 71 -4.2 -4.77986 | ATTCAGTAATTCGAA CAAAGG AAG CCTTAG TTTTTAAATCTTTGA CpB0175 210908 - 210645 - | guaB gene for inosine 5-monophosphase dehydrogenase subunit TERM 207 211005 - 211035 + r 77 -9.2 -3.24289 | opp_overlap 211008 211025, overlap 210999 211000 211008 TCCTTCGAATCTTAA GAAGAAATTTCTTT GGA ACAGAAGTTTCTTC TTCCGTGTTTAGGCT CpB0176 211394 - 211119 - | hypothetical protein CpB0177 211640 - 212134 + | hypothetical protein CpB0178 212305 - 212685 + | hypothetical protein TERM 208 213858 - 213877 + G 72 -9.4 -3.23274 | opp_overlap 213855, overlap 213853 TTGCTACAACGAGCA TGTCTGAT GGCT ATCAGACA TTAACTTGTACGACA CpB0179 212693 - 213928 + | hypothetical protein TERM 209 213977 - 213930 - T 85 -9.4 -3.91032 | gap 1, opp_overlap 213936 213939, overlap 213932 213934 213939 TAATTACTGTATAAA TAG-AGTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATTTGCTT TCTAGAGAACTCATC TERM 210 213974 - 213932 - T 91 -12.2 -3.54 | opp_overlap 213936 213939, overlap 213930 213934 213939 ATTACTGTATAAATA GAGTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATTTG CTTTCTAGAGAACTC TERM 211 213972 - 213934 - T 100 -14.8 -3.34244 | opp_overlap 213936 213939, overlap 213932 213930 213939 TACTGTATAAATAGA GTTAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTATT TGCTTTCTAGAGAAC TERM 212 213936 - 213970 + T 100 -21.8 -4.13995 | opp_overlap 213934 213932 213930 213939, overlap 213939 CTGTATAAATAGAGT TAAGACATCCCCTTAA GTT TTAAGGGGATGTCTTA TTTGCTTTCTAGAGA TERM 213 213939 - 213967 + T 100 -19.1 -4.18676 | opp_overlap 213934 213932 213930 213939, overlap 213936 TATAAATAGAGTTAA GACATCCCCTTAA GTT TTAAGGGGATGTC TTATTTGCTTTCTAG TERM 214 213967 - 213939 - T 100 -19.1 -3.22943 | opp_overlap 213939 213936, overlap 213934 213932 213930 TATAAATAGAGTTAA GACATCCCCTTAA GTT TTAAGGGGATGTC TTATTTGCTTTCTAG CpB0180 214866 - 214012 - | hypothetical protein TERM 215 215163 - 215144 - R 71 -8.6 -2.99593 | gap 1, opp_overlap 215143, overlap 215143 AGTCTATAATGAAAG CTC-CCCGA GAT TCGGGAGAG AACTTTTGTTAGTGC CpB0181 215459 - 215193 - | hypothetical protein CpB0182 215810 - 215460 - | hypothetical protein CpB0183 216313 - 215759 - | hypothetical protein CpB0184 216582 - 216181 - | hypothetical protein CpB0185 218102 - 216738 - | acetyl-CoA carboxylase biotin carboxylase subunit TERM 216 217643 - 217654 + g 78 -4.4 -5.10077 | opp_overlap 217643 CGGCTTTAATAACAA TAGG GAAA CCTA TTTTTTCAGCTATTT CpB0186 218602 - 218099 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit CpB0187 219182 - 218625 - | elongation factor P TERM 217 218954 - 218942 - G 80 -2.7 -5.58209 | CTAAATCTAAAAAAA GATAA CTT TCATC TTCAAGATATAAATA CpB0188 219858 - 219169 - | ribulose-phosphate 3-epimerase TERM 218 219679 - 219664 - G 77 -6.2 -4.59773 | opp_overlap 219664 GTGGACTTCTAAAAA TAGATC CGTA GATCTA TTAATGGCAGCAATG TERM 219 221197 - 221187 - g 75 -5.4 -4.89838 | TCAAGAAATAGAAAA GTTG GCC CAAC ATGAAACATCTTTGC CpB0189 220306 - 221478 + | inclusion membrane protein A TERM 220 221514 - 221543 + F 100 -15.3 -6.09133 | opp_overlap 221514 GACTTCCTTAGAAAA TAAGCAGTAAAGT TTTA ACTTTACTGCTTA TTTTTTTTTGAAATG TERM 221 221543 - 221514 - f 100 -15.3 -4.3739 | opp_overlap 221514 GACTTCCTTAGAAAA TAAGCAGTAAAGT TTTA ACTTTACTGCTTA TTTTTTTTTGAAATG TERM 222 222411 - 222398 - g 70 -5.3 -4.47551 | opp_overlap 222404, overlap 222410 AGCTAAGGCAGAAAA CCTTT GTCG AAAGG AATTTCCATTATTCC CpB0190 221655 - 222455 + | hypothetical protein CpB0191 222518 - 223810 + | hypothetical protein TERM 223 223936 - 223903 - g 86 -12 -3.05268 | gap 1, opp_overlap 223906 223907, overlap 223906 CAACTACTTTCAACA GAATCAGGGAAATAC CTTGT GT-TTTCCCTGATTC ATAAAGAATCCGGAC TERM 224 223933 - 223906 - g 70 -7.9 -3.66784 | gap 1, opp_overlap 223906 223907, overlap 223903 CTACTTTCAACAGAA TCAGGGAAATAC CTTGT GT-TTTCCCTGA TTCATAAAGAATCCG TERM 225 225152 - 225185 + G 79 -3.1 -5.26119 | opp_overlap 225154, overlap 225153 225154 225180 ATAACCCGCTATTGA AATTGTCATGCTCCA TGTC TGGAGCATGGAAAAA TTTTCTTTTTAAAGG TERM 226 225154 - 225183 + G 72 -10.1 -2.83668 | opp_overlap 225154, overlap 225153 225152 225180 AACCCGCTATTGAAA TTGTCATGCTCCA TGTC TGGAGCATGGAAA AATTTTCTTTTTAAA TERM 227 225183 - 225154 - g 70 -7.9 -3.65199 | opp_overlap 225154 225153 225152 225180 AACCCGCTATTGAAA TTGTCATGCTCCA TGTC TGGAGCATGGAAA AATTTTCTTTTTAAA TERM 228 225251 - 225229 - g 80 -2.6 -5.46657 | opp_overlap 225229, overlap 225213 225209 225230 CACTTTAATAAAAAA TGGCAGGAGA TTC TCTCTCCCCA CTTCTCTTACGCTGA TERM 229 225361 - 225351 - g 73 -5.4 -4.67608 | TACTGCAAGAGAAAA TGAG CTG CTCA TCCATGCAAAATTTG TERM 230 226125 - 226136 + G 74 -4.4 -4.92757 | CTTCTATGATAATGT GTCT AAAG AGAC TTTTATTATTAATGA TERM 231 226818 - 226831 + G 71 -2.4 -5.23292 | GCAATTTGTAGAATC TTGG TTCACT CCAA TTTTCTTTTCTGTAC CpB0192 223807 - 227235 + | hypothetical protein TERM 232 228619 - 228604 - g 74 -6.2 -4.48987 | TCTCTACAATTAAAA CAAACT AATC AGTTTG AAAACTCCCCTGTCG CpB0193 227326 - 228684 + | hypothetical protein TERM 233 228721 - 228686 - T 71 -7.6 -3.62096 | opp_overlap 228689 228692, overlap 228687 228689 GGTCAGGATTCTAAA GTATCACTACAGCTGC TCTA GCAGCTGTAGTCCTAT TGAGCAGAGTGGATA TERM 234 228720 - 228687 - T 81 -11.1 -2.77043 | opp_overlap 228689 228692, overlap 228686 228689 GTCAGGATTCTAAAG TATCACTACAGCTGC TCTA GCAGCTGTAGTCCTA TTGAGCAGAGTGGAT TERM 235 228689 - 228718 + T 74 -9.3 -3.02144 | opp_overlap 228689 228687 228686, overlap 228692 CAGGATTCTAAAGTA TCACTACAGCTGC TCTA GCAGCTGTAGTCC TATTGAGCAGAGTGG TERM 236 228718 - 228689 - T 73 -9.3 -2.93089 | opp_overlap 228689 228692, overlap 228687 228686 CAGGATTCTAAAGTA TCACTACAGCTGC TCTA GCAGCTGTAGTCC TATTGAGCAGAGTGG TERM 237 228692 - 228715 + T 100 -15.4 -2.73875 | opp_overlap 228689 228687 228686, overlap 228689 GATTCTAAAGTATCA CTACAGCTGC TCTA GCAGCTGTAG TCCTATTGAGCAGAG CpB0194 229398 - 228718 - | amino acid transport ATP-binding protein CpB0195 230041 - 229388 - | ABC amino acid transporter permease CpB0196 230533 - 230090 - | arginine repressor protein CpB0197 230617 - 231651 + | O-sialoglycoprotein endopeptidase TERM 238 232697 - 232674 - gf 70 -2.6 -5.0538 | gap 1, overlap 232675 GCTTACGCTAAAAAA CTCTT-TAAAG AAG CTTTAGAAGAA CTCCAAATCACCGCT CpB0198 231597 - 233195 + | oligopeptide ABC transport system substrate-binding protein oppA precursor TERM 239 233245 - 233267 + F 73 -6.9 -4.00868 | opp_overlap 233245, overlap 233248 GAATCTTATACTAAA CTGGGTGCC TTTGT GGCACCTCG TTTCCTTCTGACTGC TERM 240 233248 - 233264 + F 74 -9.4 -3.04864 | opp_overlap 233245, overlap 233245 TCTTATACTAAACTG GGTGCC TTTGT GGCACC TCGTTTCCTTCTGAC TERM 241 233928 - 233908 - g 76 -10.5 -3.00525 | CTCTGCGAAACTATA GCACCTCTT TTG AAGAGATGC CCATTACCTGCGGTG CpB0199 233346 - 234929 + | oligopeptide ABC transport system substrate-binding protein oppA precursor TERM 242 234995 - 235008 + G 75 -2.3 -5.3321 | TTAAAATGTTTTCAC GATGG ATCA CCCTC TTTTTATTATTCATT CpB0200 234985 - 236292 + | oligopeptide ABC transport system substrate-binding protein oppA precursor TERM 243 236286 - 236316 + F 93 -3.3 -6.09888 | gap 1, overlap 236315 CAAATATACCTATTT CCCCTAGACAAAAG AAGT CTTTGGTA-AGGGG TTTTTTTTATTGAAG CpB0201 236570 - 238156 + | dipeptide ABC transporter oppB 238449 - 239393 + | oligopeptide transport system permease protein oppC 239424 - 240278 + | oligopeptide ABC transporter (permease) oppD 240271 - 241125 + | oligopeptide transport ATP-binding protein oppF 241122 - 241910 + | oligopeptide transport protein CpB0206 242017 - 242199 + | hypothetical protein CpB0207 242415 - 243212 + | hypothetical protein CpB0208 243224 - 243412 + | hypothetical protein CpB0209 243540 - 243737 + | hypothetical protein CpB0210 243816 - 244571 + | hypothetical protein TERM 244 245354 - 245342 - g 80 -6.3 -4.7497 | overlap 245345 245347 TCTACCCACCAAAAA TCACA TCT TGTGA AGAGGCTATCCGATC TERM 245 245449 - 245459 + G 71 -6.8 -4.1413 | TTTTTCCTCCTTGTA GTCC TCT GGAC TTTTGGAGATCTCTT CpB0211 244615 - 246027 + | 2-oxoglutarate/malate translocator precursor TERM 246 246085 - 246122 + F 100 -15.1 -2.80622 | opp_overlap 246085 246089, overlap 246088 246095 TATTTTGTGAAATAT GAAAGCTAAATCATAGG ACCA CCTGTGATTTAGCCTTC TGTCATAAGCTCTCT TERM 247 246122 - 246085 - f 100 -15.1 -2.60813 | opp_overlap 246085 246088 246095, overlap 246089 TATTTTGTGAAATAT GAAAGCTAAATCATAGG ACCA CCTGTGATTTAGCCTTC TGTCATAAGCTCTCT TERM 248 246088 - 246119 + F 89 -11 -3.54951 | opp_overlap 246085 246089, overlap 246085 246095 TTTGTGAAATATGAA AGCTAAATCATAGG ACCA CCTGTGATTTAGCC TTCTGTCATAAGCTC TERM 249 246118 - 246089 - f 100 -12.3 -4.00532 | opp_overlap 246088 246085 246095, overlap 246085 TTGTGAAATATGAAA GCTAAATCATAGG ACCA CCTGTGATTTAGC CTTCTGTCATAAGCT TERM 250 247126 - 247102 - g 70 -9.3 -2.8478 | opp_overlap 247103, overlap 247101 247105 ACCACTTCATTAAAC TTATGGGACGC TCA GCATCCCATAT TGCTTTGGAATGTGC TERM 251 247103 - 247125 + G 80 -10.6 -3.53745 | opp_overlap 247102 247101 247105 CCACTTCATTAAACT TATGGGACGC TCA GCATCCCATA TTGCTTTGGAATGTG TERM 252 247123 - 247105 - g 76 -11 -2.67981 | opp_overlap 247103, overlap 247102 247101 ACTTCATTAAACTTA TGGGACGC TCA GCATCCCA TATTGCTTTGGAATG TERM 253 247809 - 247797 - g 80 -2.7 -5.46698 | CCTAAAATTAAAAAA TACCT CGT AGATA TAGGAAGCACGGCAT CpB0212 246360 - 248012 + | diphosphate--fructose-6-phosphate 1-phosphotransferase CpB0213 248437 - 248682 + | hypothetical protein CpB0214 249791 - 248844 - | hypothetical protein TERM 254 248972 - 248993 + g 74 -4.5 -4.77719 | TACTTTTAGCAATTG CAAACTCAA GCTC TTTAGTTTG TTTTATTCCCTTTTC TERM 255 249597 - 249626 + g 78 -10.3 -3.38072 | gap 1 AGCATTCCACGCATC GAT-TGCTTTTTGA GAC TCAAAAAGCACATC TTCATCTTCCGTAGC CpB0215 250163 - 249867 - | hypothetical protein CpB0216 251485 - 250292 - | hypothetical protein TERM 256 250922 - 250934 + g 74 -6.3 -4.43012 | TGCCTCTTTACACTG CTCTA AAA TAGAG TTTTGCTCTTGGGCT TERM 257 251220 - 251193 - G 79 -11.4 -2.52896 | opp_overlap 251182 251192 TTAGGCTCTAATCCA TAGCGCTCCTTA AATT TAAGAAGCGCCA ATCCTATACTTATTA CpB0217 251679 - 251521 - | hypothetical protein CpB0218 253071 - 251857 - | hypothetical protein CpB0219 254429 - 253170 - | hypothetical protein TERM 258 253349 - 253372 + g 75 -8.3 -3.75332 | opp_overlap 253349 CATACTCCTCTAAGA CTTTCTCTT GTTCCG AAGAGAAAG TTTGAGTTAAAAACT CpB0220 255022 - 254585 - | hypothetical protein CpB0221 255310 - 255996 + | hypothetical protein CpB0222 256562 - 255993 - | hypothetical protein TERM 259 256549 - 256522 - G 77 -3.6 -5.13722 | overlap 256517 TTCATTAAAATAAAA GTTTTAAAAAGA TTAA TTTTCTTAAAAC AAAATATCCCCAATA TERM 260 257437 - 257453 + G 76 -10.9 -2.62184 | overlap 257439 CGTTTTGTTGAGGAT GAGCCAT TCG ATGGCTC TGCTATCGGAGGCAG TERM 261 257496 - 257520 + G 86 -10.1 -4.03234 | opp_overlap 257482, overlap 257482 CCTTCAAGAAATGTC TGAAGTGGTTA AAA TCACCACTTCA TTTCTATCAAAAGAA CpB0223 256771 - 257889 + | queuine tRNA-ribosyltransferase TERM 262 258033 - 258013 - f 95 -2.7 -6.22691 | opp_overlap 258013, overlap 258017 TAAGAATAAAAAAAA TTAATTTTT ATT AAAAAATAA TTAATTTATCGGATT TERM 263 258191 - 258174 - g 83 -9.1 -4.07868 | CGATATTCAGAGAAA CGCCCTC GAAA GAAGGCG TGGCATATAAACTTC CpB0224 258110 - 258655 + | hypothetical protein TERM 264 258754 - 258802 + F 100 -14.8 -3.78934 | CGAAGTACCTATACG TAGCAGCTACTAAGAAAAAAGG AATCC CCACTTCTCTTAGTAGCTGCTA TTATTATAAAAGACG CpB0225 259071 - 259481 + | hypothetical protein CpB0226 259837 - 259646 - | hypothetical protein CpB0227 259918 - 260259 + | hypothetical protein CpB0228 260370 - 260750 + | hypothetical protein TERM 265 260782 - 260757 - f 71 -6.3 -4.16033 | gap 1, opp_overlap 260757 260754 260765, overlap 260762 260765 TGCAAATAACAACAA TTAATCCACGCC TAC GGCGT-AATTAA ATTGTATCTTTTTAG CpB0229 260849 - 261091 + | hypothetical protein CpB0230 261070 - 261240 + | hypothetical protein TERM 266 261529 - 261543 + G 82 -8.6 -4.33621 | opp_overlap 261529 261531 AATTGCTTTAGCCAA CATAGG TTT CCTATG TTTATTACTTAGATG TERM 267 261765 - 261743 - g 75 -8.4 -3.84284 | opp_overlap 261749 261752 261756, overlap 261746 GCAAAAGTTATGAAA GAAGGAGCCG AAG CAGCTTCTTC AATTAAACAAGCTGT CpB0231 261287 - 261958 + | hypothetical protein TERM 268 262017 - 261999 - g 80 -10.3 -3.43109 | overlap 261997 CATACTATGCAAACA CCCTGGA GTTCA TCCAGGG AACTCAAAGTCTATG CpB0232 261980 - 262384 + | hypothetical protein CpB0233 262833 - 262420 - | putative disulfide oxidoreductase CpB0234 263524 - 262823 - | putative disulfide bond chaperone CpB0235 263598 - 264977 + | hypothetical protein CpB0236 265667 - 264987 - | hypothetical protein TERM 269 265053 - 265065 + g 74 -4.8 -4.84539 | TTCTTTCTTAGCTTC GCGT TCGTC ACGC TTTTCTCTTTGGTTC CpB0237 266371 - 265664 - | ATP-binding cassette-transport protein TERM 270 266131 - 266143 + g 91 -7.7 -4.76041 | AAGCCGTACGCCAAG GAAGC AGG GCTTC TTTTTGCTGCATATA CpB0238 267536 - 266643 - | pfs protein TERM 271 266811 - 266788 - G 77 -8.2 -3.98913 | TTCACACCTAAACAA GGAATGCTAT ATTC ATAGCATACC TGAGAAACAGCGCCG TERM 272 266901 - 266884 - G 73 -9.9 -3.05194 | overlap 266876 266883 AAGGAAAGAAAATAG TTTCGCG ACAT CGCGAAA GACTCGCCTGTAGCA CpB0239 267832 - 267659 - | hypothetical protein TERM 273 267907 - 267927 + r 90 -11.2 -3.61398 | opp_overlap 267907 ATATAAATAAAAAAA CCATTGCC AACCC GGCAATGG TTCTTAAAACACAAA TERM 274 267927 - 267907 - R 100 -11.9 -6.04953 | opp_overlap 267907 ATATAAATAAAAAAA CCATTGCCA ACC CGGCAATGG TTCTTAAAACACAAA CpB0240 268654 - 267959 - | hypothetical protein TERM 275 268972 - 268945 - g 73 -7.2 -4.22041 | gap 1, opp_overlap 268945 AAAGCTTAATACAAA GAACTTATGAGAA TGC TTCCCA-AAGTTC TCTATTAGATAAAAT CpB0241 268830 - 269594 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 276 269598 - 269613 + G 73 -9 -3.53343 | opp_overlap 269597 269600 GCATATTTTTAACAG GAGGAG TTGT CTCCTC TTTAGGAAAAGGGTT CpB0242 269570 - 271183 + | CTP synthetase TERM 277 271483 - 271468 - g 72 -7.6 -3.89346 | overlap 271451 TTTCTACGGTAGAAA TCATCC TATG GGATGA ACGGCTTTCTTCAGT TERM 278 271571 - 271561 - g 71 -3.2 -4.99134 | ATCGGAAAGGAAAAA CAGA TTC CCTG GCTGCAACATTAATC TERM 279 271620 - 271594 - g 73 -8.2 -3.68936 | CATTAATCTTAACAA GTTTTCTAGATA GCT TACCTAAAAAAC TAACCTTGTAATCAT CpB0243 271176 - 271631 + | Holliday junction resolvase-like protein TERM 280 272230 - 272172 - g 74 -7.7 -4.02911 | gap 1, opp_overlap 272188, overlap 272187 272191 TTTAAATAAACATAA GCTTTTCTATAA-AAATCAAGACCAAGG GAAA CCCTGGTCCCGTGTCATTATAGAAAAAC CTTTTGGAAGAGACT TERM 281 272214 - 272187 - g 80 -6.2 -4.82901 | opp_overlap 272188, overlap 272172 272191 GCTTTTCTATAAAAA TCAAGACCAAGG GAAA CCCTGGTCCCGT GTCATTATAGAAAAA TERM 282 272210 - 272191 - g 84 -10 -3.88001 | opp_overlap 272188, overlap 272187 272172 TTCTATAAAAATCAA GACCAAGG GAAA CCCTGGTC CCGTGTCATTATAGA TERM 283 273109 - 273121 + G 91 -7.7 -4.79826 | GGAGATGAAGTTATG GCTTC TTG GAAGC TTTTTACTCCTGTAT CpB0244 271717 - 273255 + | glucose-6-phosphate 1-dehydrogenase TERM 284 273746 - 273769 + G 71 -3.2 -5.05782 | gap 1, opp_overlap 273751 TTATGTTAGGACTAG GAGAAGATGGT CAC ACCCT-TTCTC TTTTTTCCAATACCT TERM 285 273981 - 273967 - g 90 -7.2 -5.24796 | GGTAGAGAAGAAAAA CTCTAT CCT ATAGAG CGTGTAGGTAGGGAC CpB0245 273289 - 274089 + | 6-phosphogluconolactonase CpB0246 275275 - 274109 - | hypothetical protein CpB0247 276780 - 275614 - | hypothetical protein TERM 286 276484 - 276494 + g 70 -2.6 -5.0133 | CAGGGGACAACACCC TATT CCA AATA TTTTTTCAAAAAATC CpB0248 277332 - 276898 - | hypothetical protein TERM 287 277533 - 277503 - R 100 -12.8 -5.1244 | opp_overlap 277503 277505 CCATGAATATAAAAA TAGAGGTCTTTCTA GCT TAGAAAAACCCCTA TCTATAGTTATTACC CpB0249 277969 - 277544 - | hypothetical protein TERM 288 278032 - 277991 - H 78 -7.7 -4.15044 | CCTCCCTTTAACAAA TTTTAATAAAAAAACTAAA TAAT TATAGTTTATTTATTAAAA AAAATAAAGTTATAT CpB0250 278100 - 278339 + | hypothetical protein adk 278332 - 278973 + | adenylate kinase CpB0252 279059 - 279916 + | p60 precursor TERM 289 279931 - 279900 - T 95 -8.9 -4.84359 | opp_overlap 279900 279905, overlap 279905 279925 GGATCCCTAGAAAAA GAAAAGCCTTTCT GTAATA AGAAAGGCTTTTT CCAAAAACGATTCGA TERM 290 279905 - 279926 + T 89 -8.8 -4.56597 | opp_overlap 279900 279905 279925, overlap 279900 CCTAGAAAAAGAAAA GCCTTTCT GTAATA AGAAAGGC TTTTTCCAAAAACGA TERM 291 279926 - 279905 - T 95 -8.8 -5.35224 | opp_overlap 279900 279905, overlap 279900 279925 CCTAGAAAAAGAAAA GCCTTTCT GTAATA AGAAAGGC TTTTTCCAAAAACGA TERM 292 279983 - 279994 + T 70 -2.2 -5.38047 | CTTAGAGAATTGGAA GCTT TTAC GAGC TTTTTTATGTCCGTA rpsI 280366 - 279962 - | 30S ribosomal protein S9 TERM 293 280401 - 280417 + r 75 -8.1 -3.84825 | overlap 280406 ATCTAATAAAATTGG CTTTTGA GAT TCAAAAG TTTCGTATGAATCCC rplM 280829 - 280380 - | 50S ribosomal protein L13 CpB0255 281741 - 281061 - | ABC transporter ATPase TERM 294 281279 - 281291 + g 73 -5.5 -4.63527 | opp_overlap 281268 281279 TTAACGCTCTAGCAA TAGCG ACT CGCTG TTTTTCCCCTCCTGA CpB0256 283255 - 281744 - | hypothetical protein TERM 295 281937 - 281954 + g 85 -5.7 -5.2422 | AAATAGTTCAGTGCT TTTACAA TGAA TTGTAAA TTTTTTAATGTAATT TERM 296 282272 - 282285 + g 77 -3.9 -5.20328 | GACACCTAAGGAAGT TAGAA TATT TTCTA TTTGTTTTTTTACAA rpmG 283471 - 283313 - | 50S ribosomal protein L33 TERM 297 283509 - 283493 - g 71 -4.5 -4.63218 | opp_overlap 283493 GTCCTTTTAAGAAAA TAGTAAA TCG CTTACTA TGCTATATTTCTTTT TERM 298 283882 - 283898 + G 72 -9.5 -3.10641 | opp_overlap 283880 GATGAGCTTAAACCC TGGATGT CAC ACATCCA TTACCTACTAGGTTC TERM 299 284463 - 284447 - g 70 -7.3 -3.76224 | opp_overlap 284433 CTTCTAGGGAGCAAA TCCTAGG ATT CCTAGAA AAATTACGTGCCAAG TERM 300 284986 - 284938 - g 89 -6.2 -5.40072 | gap 2, opp_overlap 284938 284941 284942, overlap 284939 284946 CGTGTTGTAAAAAAA TCTCAGAA-CC-AAGCTTTGCTAA AAA CTAGCAAAGCTTAGGGTCCTGTGG TTAGTTAACAAAAGG TERM 301 284985 - 284939 - g 84 -9.7 -3.83561 | gap 2, opp_overlap 284938 284941 284942, overlap 284938 284946 GTGTTGTAAAAAAAT CTCAGAA-CC-AAGCTTTGCTAA AAA CTAGCAAAGCTTAGGGTCCTGTG GTTAGTTAACAAAAG TERM 302 284976 - 284946 - g 100 -14.2 -3.47063 | opp_overlap 284942 284941 284938, overlap 284939 284938 AAAAAAATCTCAGAA CCAAGCTTTGCTAA AAA CTAGCAAAGCTTAG GGTCCTGTGGTTAGT CpB0258 283474 - 284976 + | hypothetical protein CpB0259 285499 - 284987 - | hypothetical protein CpB0260 285870 - 285361 - | hypothetical protein CpB0261 286676 - 285870 - | hypothetical protein CpB0262 287579 - 286740 - | hypothetical protein TERM 303 287268 - 287251 - G 78 -2 -5.47159 | overlap 287253 287263 TTGGAACAGAAAAAA TATTCG GGAGAA CGAACA TAATTCGCTGGCACC TERM 304 287758 - 287808 + r 100 -14.2 -3.63515 | opp_overlap 287761, overlap 287761 CCAAGTGATATAAGG AAATCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGATGA TTATTCAACGTAAGG TERM 305 287805 - 287761 - R 100 -24.7 -4.04576 | opp_overlap 287758 287761 AGTGATATAAGGAAA TCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGA TGATTATTCAACGTA TERM 306 287761 - 287805 + r 100 -20.3 -2.93549 | opp_overlap 287761, overlap 287758 AGTGATATAAGGAAA TCGAACTCCAAGCATCGTTAG TTT CTAACAATACTTGGAGTTCGA TGATTATTCAACGTA CpB0263 288678 - 287809 - | hypothetical protein TERM 307 288463 - 288474 + g 75 -3 -5.1523 | GGTGCTTGTAGGTCT GATA TTTA TATC TTTTTGTATTGTAAG CpB0264 289541 - 288678 - | hypothetical protein CpB0265 290400 - 289852 - | hypothetical protein CpB0266 290711 - 290547 - | pEARLI 4 TERM 308 290967 - 290979 + r 72 -4.8 -4.66264 | TCTGAAATTAATCTT CCTC AACTG GAGG TTTTTGAGAGTTTTC CpB0267 291474 - 290959 - | YecA TERM 309 291167 - 291180 + g 75 -3.1 -5.2189 | TCTTCTTTTGCCTGA GCTTT CTTA AGAGC TTTTTTACTCATTAC TERM 310 291562 - 291516 - H 77 -4.7 -5.10163 | gap 1, opp_overlap 291529 AAGCTCAAAATAAAA TCCAAAGTCAAATGCAAAAACC TATT GCTTTTTTC-TTTAACCTTGGA ACCTAGTACTCGTTA TERM 311 291529 - 291543 + H 80 -2.8 -5.64421 | opp_overlap 291516 AATCCAAAGTCAAAT GCAAAA ACC TATTGC TTTTTTCTTTAACCT CpB0268 291716 - 292450 + | YdaO surE 292505 - 293350 + | stationary phase survival protein SurE TERM 312 293374 - 293398 + F 79 -8 -4.0031 | opp_overlap 293376, overlap 293363 TAGTCTTTGGTATCA GAGGTCTTTT TTTAC AAAAGATCTC TTGTTTAATCGAGAT TERM 313 293608 - 293592 - f 75 -10.1 -2.62933 | CAATTGGTTAGAGCA CCGCCCT GTC AAGGCGG AAGTTGCGGGTTCGA CpB0270 293663 - 294553 + | hypothetical protein CpB0271 295144 - 294566 - | aromatic acid decarboxylase ubiA 296034 - 295141 - | prenyltransferase TERM 314 295370 - 295347 - G 75 -3.2 -5.15117 | opp_overlap 295361, overlap 295361 CAAAACCTGAAAAAA TATAAGCAAG ATAA CTTACCCATA AGTTTACTTTTGCAA TERM 315 295996 - 295977 - G 82 -2.2 -5.61596 | opp_overlap 295978, overlap 295978 ATGCTGATAAAAAAA GTATTGAA AATA TTGAATAC TTAAAATTAACTAAA TERM 316 296122 - 296149 + H 88 -7.8 -4.89852 | gap 1, opp_overlap 296127, overlap 296123 296124 TCCCCCCAATCTTTT TA-GAACCCCCTA TGT TAGGGGGTTCGTC TTTTTATGCCTCTAC TERM 317 296123 - 296147 + H 100 -12.9 -4.06785 | opp_overlap 296127, overlap 296122 296124 CCCCCCAATCTTTTT AGAACCCCCTA TGT TAGGGGGTTCG TCTTTTTATGCCTCT TERM 318 296124 - 296146 + H 100 -16.4 -3.02986 | opp_overlap 296127, overlap 296123 296122 CCCCCAATCTTTTTA GAACCCCCTA TGT TAGGGGGTTC GTCTTTTTATGCCTC TERM 319 296143 - 296127 - H 91 -12.3 -3.30159 | opp_overlap 296124 296123 296122 CCAATCTTTTTAGAA CCCCCTA TGT TAGGGGG TTCGTCTTTTTATGC CpB0273 296598 - 297293 + | HB6 protein TERM 320 297362 - 297317 - f 78 -2 -5.64873 | overlap 297319 TTTAAGAACAAAAAA GGGTTTTAAAGTAGGTAAAT GAGAAA ACTTACTCACTATAAAACTC TTAAAACTATAAAAA CpB0274 297545 - 298327 + | hypothetical protein CpB0275 298391 - 298735 + | hypothetical protein TERM 321 298761 - 298739 - T 77 -5.5 -4.95155 | opp_overlap 298739 CTTATAGGATAAAAA CAGTGCGAA TGAGT TCCGCCCTG TTTAATACTGTGTTA CpB0276 299864 - 298887 - | membrane dipeptidase precursor CpB0277 300739 - 299879 - | SUA5 protein CpB0279 301048 - 301779 + | esterase dnaX 302506 - 301751 - | DNA polymerase III subunit delta' TERM 322 302237 - 302261 + g 95 -12.3 -3.36837 | overlap 302235 302225 CAATCTCTGAACTTT TGCTGTTGTCA ATA TGATAACAGCA TGTTTCGGAGGTTCT TERM 323 302306 - 302294 - G 71 -4.8 -4.62302 | GAAGACTTTTAAAAA TGCG GAAAT CGCA GCTAAAGTCATTCGA tdk 303258 - 302638 - | thymidylate kinase CpB0281 305767 - 303263 - | DNA gyrase subunit A TERM 324 305151 - 305168 + g 78 -9.9 -3.53012 | opp_overlap 305147 305146 ACTTGTAAAATCTCA TCCACAG AAGC CTGTGGA TTTGCAAGCAGAAGA gyrB 308200 - 305783 - | DNA gyrase subunit B TERM 325 307109 - 307085 - G 73 -3.5 -5.00884 | ATTCTCTTCAAAAAA GATTGTCAGAG CTT CCCCTACAACC TGTTGAGCCACTGAG CpB0283 308551 - 308204 - | hypothetical protein CpB0284 308618 - 308818 + | hypothetical protein CpB0285 309324 - 308815 - | hypothetical protein CpB0286 310289 - 309471 - | gene encoding a 29 kDa immunogenic protein CpB0287 310951 - 310286 - | ABC transporter TERM 326 310657 - 310647 - G 71 -3.2 -4.93661 | ATAGTAACAACAAAA GGAA TGG CTCC GATAGTGAGAGGAAC TERM 327 310944 - 310955 + g 71 -3 -4.91511 | ATCTGAATAAGATCG GATT GCAT AATC TTTTTCTAATAAAAT CpB0288 311986 - 310961 - | amino-acid ABC transporter protein TERM 328 311076 - 311050 - G 73 -7.5 -4.20868 | gap 1, opp_overlap 311057 CTTCCAAAACAATAA TTAGA-AATCCC ATTG GGGATTTTCTAA ATAAATTAATGTTGC TERM 329 311057 - 311068 + g 73 -5.8 -4.43501 | opp_overlap 311050 AACAATAATTAGAAA TCCC ATTG GGGA TTTTCTAAATAAATT TERM 330 311844 - 311829 - G 78 -9 -3.76534 | opp_overlap 311829, overlap 311822 TCAAGAAAGTCTAAA CAACGC AAAA GCGTTG TTTTCCCAGAACCGC TERM 331 311829 - 311844 + g 80 -9 -4.07568 | opp_overlap 311829 311822 TCAAGAAAGTCTAAA CAACGC AAAA GCGTTG TTTTCCCAGAACCGC TERM 332 312047 - 312033 - H 78 -7.2 -4.3821 | AAAATAGAATACAAA GAATCT TGA AGATTC GTTAACCATTAAACT CpB0289 312471 - 313520 + | fructose-bisphosphate aldolase TERM 333 313573 - 313558 - g 83 -9 -4.18494 | CACTCCCACTCAAAA CCAACG AAAC CGTTGG GAACATTCACGGTCG TERM 334 314064 - 314080 + G 73 -5.9 -4.46072 | overlap 314066 CTTTTGGATTTTTTC TGGCAAT CCC ATTGCTA TTTCTCTTTCTTGGG CpB0290 313540 - 314946 + | extreme acid resistance protein xasA CpB0291 315911 - 314943 - | hypothetical protein TERM 335 314986 - 314974 - G 74 -4.1 -5.07652 | opp_overlap 314978 314981, overlap 314978 TTTGGGAAAAGAAAA GAAAG AAG CCTTC CTTGTTGTATGGCAG TERM 336 315014 - 314978 - G 82 -5.8 -5.04377 | opp_overlap 314978 314981, overlap 314974 GGAAAAGAAAAGAAA GAAGCCTTCCTTGTTG TATGG CAGCCTGGAAAGCTTC TGGATTCAAATTTGC CpB0292 316384 - 315962 - | hypothetical protein CpB0293 318009 - 316462 - | hypothetical protein TERM 337 317093 - 317105 + g 75 -3.4 -5.09225 | GTAAGAAGATTAGGG TCGT ATGCA ACGA TTTTTTCAATACACT mgtE 319473 - 318061 - | MgtE TERM 338 318209 - 318193 - G 76 -2.9 -5.33405 | overlap 318194 318195 CTTAGCAAAGAAAAA TGGGGAT AAA ACCCCTA GAGTCGTAGCTGTGA TERM 339 319236 - 319224 - G 74 -4.8 -4.77759 | ACAACCTACGAAAAA TCGC CCACC GCGA AGCAGAATCTGTATT CpB0295 321635 - 319500 - | hypothetical protein TERM 340 321762 - 321710 - R 73 -3.8 -5.14163 | gap 1, overlap 321713 ACCCACTAATAAAAA CTAGTTTTTGAAAAGAATTCTAAAA ACCT TCTTTTAAT-CTTTTCAAAAACAAG AACATCTATTTCTTA CpB0296 323130 - 321982 - | hypothetical protein TERM 341 322670 - 322681 + g 70 -5.8 -4.30034 | opp_overlap 322664 322670 TCTAGATAAGAGCAA GCAC TCAC GTGC TTTTCATCGAATTTT TERM 342 323310 - 323325 + G 79 -7.6 -4.30987 | GGTTTAGGAAGTGTG CAATCC CCAT GGATTG TTTATTCTGCCGAAT TERM 343 323729 - 323718 - g 71 -3 -5.06414 | TTTCTTCAAGAAAAA GAAA AACA TTTC GTAAATCAATTTTTT CpB0297 323226 - 324413 + | amino acid (glutamate) transporter CpB0299 324456 - 325940 + | sodium-dependent amino acid transporter CpB0298 326080 - 325925 - | hypothetical protein TERM 344 325979 - 325954 - G 73 -9.1 -3.43965 | overlap 325951 AAATCCAATCGATAA TTCTACTCTGA ATAT TCAGGGTAGAA TCACAGCATTTTGGA CpB0300 326081 - 326611 + | inclusion membrane protein B CpB0301 326642 - 327253 + | inclusion membrane protein C CpB0302 327363 - 330140 + | hypothetical protein TERM 345 330719 - 330704 - g 81 -4 -5.27938 | overlap 330705 ATCTCTAAAGAAAAA CTAGAG TCTC CTCTAA ATTTAAAACCTTTAG TERM 346 330770 - 330753 - g 70 -7.1 -3.83026 | GTTTTGGAGAGGAAA GCTTATT CAAT AATAAGC CCAGGGAATACAATG CpB0303 330506 - 330919 + | cAMP-dependent protein kinase type I regulatory subunit acpP 331277 - 331038 - | acyl carrier protein fabG 332179 - 331433 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 347 332142 - 332152 + g 78 -4 -5.1101 | CCTCGAGATCCTCCA GTTA CTA TAAC TTTTTTGCCTACTAA fabD 333111 - 332185 - | acyl-carrier-protein S-malonyltransferase yjaX 334135 - 333128 - | 3-oxoacyl-(acyl carrier protein) synthase III recR 334230 - 334832 + | recombination protein RecR CpB0309 335191 - 337569 + | putative omp85 analog CpB0310 337664 - 338179 + | OmpH-like outer membrane protein TERM 348 338381 - 338368 - g 86 -6.7 -5.0133 | opp_overlap 338368 338367 TAGCTTTCTAAAAAA CACCA AAGC TGGTG CTATTATTTTATCTA lpxD 338201 - 339283 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CpB0312 340372 - 339332 - | hypothetical protein TERM 349 339362 - 339383 + g 89 -6.7 -5.29846 | ACGTACTCTTCTTTT TATCATGAG AATT TTCATGATA TTTTTATTTAAAATT TERM 350 340082 - 340056 - G 71 -9 -3.30771 | CTACATCCGGGAGAA TAAAAAAATAAC TGA GCTATTTTTTTA TCCATCGAAGTTAAC TERM 351 340137 - 340155 + g 85 -2.4 -5.82316 | overlap 340138 TCCAACTCTTCATTT TTGAATGG CAA CCATTGAG TTTTTTTTAAGTAGT TERM 352 341032 - 341020 - g 100 -6.3 -5.95946 | opp_overlap 341020 TCAAGAACAAAAAAA TAGAG TTT CTCTA TGCTTTATCGGAGAT CpB0313 340547 - 341575 + | pyruvate dehydrogenase complex E1 alpha subunit TERM 353 342128 - 342117 - g 75 -7.2 -4.35874 | GAATATAACTTAAAA GGGG AAGT CCCC ACCGAAGAATATCTC CpB0314 341568 - 342554 + | pyruvate dehydrogenase E1 beta subunit CpB0315 342559 - 343848 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 354 343862 - 343907 + T 74 -9.1 -3.12874 | opp_overlap 343866, overlap 343865 343893 AGCAATCTTTGAACA AAAAGGACTCTTTCTATAGCT CCTT GGCTATGGAAAGAGTCCCTGA TTCCATCCTGTCTAT TERM 355 343865 - 343904 + T 100 -15.2 -2.7674 | opp_overlap 343866, overlap 343862 343893 AATCTTTGAACAAAA AGGACTCTTTCTATAGCT CCTT GGCTATGGAAAGAGTCCC TGATTCCATCCTGTC TERM 356 343903 - 343866 - T 100 -15.8 -5.06816 | opp_overlap 343865 343862 343893 ATCTTTGAACAAAAA GGACTCTTTCTATAGC TCCTTG GCTATGGAAAGAGTCC CTGATTCCATCCTGT CpB0316 346400 - 343926 - | glycogen phosphorylase TERM 357 345342 - 345327 - G 70 -7.6 -3.7108 | ATTGGTATAGTTAAA GATGAC TGTA GTCATC TCCCAAGCCTTATCC TERM 358 346491 - 346510 + H 70 -8 -3.32844 | opp_overlap 346490 TAAATAAAAGAGAGC CTATTAAG AGAG CTTAATAG TTCTGAACTAGAGAA TERM 359 347009 - 346987 - g 84 -6.4 -4.93365 | GTCCAGAAGCAAAAA TTAGAGGA TCGTTAC TCCTCTAA ATAATCATCTCTTCG CpB0318 346648 - 347013 + | hypothetical protein dnaA 348388 - 347006 - | chromosomal replication initiation protein TERM 360 347083 - 347105 + g 95 -7.8 -5.0095 | opp_overlap 347085 TAGAAATATCTTGAA TAGCCATG TGAATAT CATGGCTA TTTTCTTCTATTTTT TERM 361 348275 - 348261 - G 73 -7.2 -4.21933 | GTAATTTGAAAAGAA TCTTGA GCT TCAAGA TACAAATTACAAGCA CpB0319 350832 - 348460 - | putative inner membrane protein translocase component YidC TERM 362 348843 - 348832 - G 70 -5.8 -4.258 | CCACCCAGGAATAAA CGAG GCTC CTCG TAATAAGAATGATGA TERM 363 349737 - 349755 + g 85 -9.6 -4.10179 | AAACATAGGGCTTTT CTTCCGGA TTC TCTGGAAG TTTGTATACCTTCTG CpB0320 351852 - 350986 - | prolipoprotein diacylglyceryl transferase TERM 364 351687 - 351652 - G 76 -2.6 -5.40625 | gap 1, opp_overlap 351662, overlap 351645 351653 AGAGTATATAAAAAA GTTTTCTAAAGCCACGC GTA GC-TGGCTTTTGGAAAA ACTTAAATGATCTTT CpB0321 351938 - 352393 + | hypothetical protein acpS 352404 - 352772 + | 4'-phosphopantetheinyl transferase CpB0322 353699 - 352764 - | thioredoxin reductase TERM 365 353321 - 353335 + g 77 -8.6 -3.91072 | GCCAAAATTCATCGT TTCCTG CTC CAGGAA TTTCTAAACGTTTAG CpB0324 354164 - 354334 + | hypothetical protein rpsA 354391 - 356133 + | 30S ribosomal protein S1 TERM 366 356156 - 356188 + F 86 -10.2 -3.5754 | gap 1, opp_overlap 356154 356159, overlap 356152 356160 TGCTGGTAATGCAGA GGATCGTATTATTTA GTTC TAAATAATACG-TCC TTAATTTAGCTATTT TERM 367 356160 - 356185 + F 81 -10.7 -2.90283 | opp_overlap 356159 356154, overlap 356156 356152 GGTAATGCAGAGGAT CGTATTATTTA GTTC TAAATAATACG TCCTTAATTTAGCTA TERM 368 356562 - 356549 - gf 72 -8.1 -3.39556 | overlap 356547 AATTTTGGAAGAATA GCTGC TCAC GCAGC ACGACAAATTATCGG TERM 369 357060 - 357048 - gf 76 -6.3 -4.51097 | opp_overlap 357048 TGAACGATGAGAAAA TTGAC ATT GTCAA TTACTCCCCCGTCTC nusA 356234 - 357538 + | transcription elongation factor NusA TERM 370 357601 - 357588 - gf 78 -2.3 -5.49568 | opp_overlap 357588 357600, overlap 357600 AAGCTAAAACAAAAA CTTGC CCAA GCAGG ATCTTCTGAAGCTAA TERM 371 357645 - 357633 - gf 71 -4.1 -4.82901 | opp_overlap 357600, overlap 357600 357635 TCTTCTTCAGAAAAA CCTTC TGC GAAAG AAAAGTCTGTAAAAG TERM 372 358143 - 358132 - gf 74 -5.8 -4.52589 | TTGCTTCAGATAAAA CAGG GAAA CCTG GAACATCTGAAGGTG infB 357477 - 360167 + | translation initiation factor IF-2 TERM 373 360520 - 360507 - g 71 -4.5 -4.63586 | overlap 360508 AGATTATATAGAAAA CCTGC TTTG GCAGA TTCAAGAGAAAGAAA rbfA 360181 - 360543 + | ribosome-binding factor A truB 360589 - 361296 + | tRNA pseudouridine synthase B ribC 361280 - 362200 + | bifunctional riboflavin kinase/FMN adenylyltransferase CpB0330 363272 - 362178 - | translation-associated GTPase TERM 374 363916 - 363948 + G 73 -8.4 -3.66732 | opp_overlap 363918 TTATGCTTATTTTAA CAGCATCACTTCCC TTACT GGGAGCTGTTGCTG TTGTTGGCGTCATTG CpB0332 363663 - 364745 + | type III secretion system protein TERM 375 365963 - 365993 + G 71 -9 -3.36273 | opp_overlap 365973 ATGCGGCAAGCTCTC TATCAGGATATCGG AAT CCGATACCCTGGCA TTCATGTTCGCACAG lcrD 364745 - 366877 + | low calcium response D TERM 376 366997 - 366972 - g 100 -13.3 -3.31144 | opp_overlap 366973, overlap 366987 CTTGCAGCTGTAGAA GCTGCAGCTGC AAAA GCAGATGCAGC AGAAGTTGTAGCCAG TERM 377 367171 - 367158 - g 75 -2.4 -5.25803 | AAGGCTGAGAAAAAA TCTG AATCTA CAGA AGAGAAGCCTGACAC copN 366906 - 368105 + | CopN scc1 368122 - 368565 + | Scc1 CpB0336 368562 - 370142 + | 4-alpha-glucanotransferase TERM 378 370145 - 370126 - f 77 -9.4 -3.26722 | overlap 370124 GTTACATTGAGAAGA TCCTTACA GGAC TGTAAGGA TAGCAATAAAACATT rpmB 370359 - 370628 + | 50S ribosomal protein L28 TERM 379 371357 - 371369 + G 78 -9.1 -3.85698 | overlap 371342 GCTACCTTCCTCCAA GGAGC GAA GCTCC TTTATAAAAAAACAA TERM 380 371450 - 371424 - g 81 -12.2 -2.53382 | overlap 371438 ACGATGCGGAATTCA TCCTGGTCGGAG AAT CTCCGGCCGGGA AACGTCGTCCTGAAG CpB0338 370655 - 372409 + | hypothetical protein TERM 381 372435 - 372449 + F 78 -2.2 -5.61881 | overlap 372435 ATTCTATTAAACGTT TAATTA AAT TAGTTA TTTTTATTTTTAAAA TERM 382 372824 - 372802 - g 70 -3.6 -4.77438 | ATCTACTATCAAAAA TTTAAAATTC CCC AAATCTTAAA GCAAGCCAGCAATGT CpB0339 372502 - 373563 + | putative phopholipase D CpB0340 374089 - 373613 - | hypothetical protein TERM 383 373870 - 373886 + g 72 -6.5 -4.38712 | opp_overlap 373870 GACGCAACTGAGAAA GCAAGAC CTT GGCTTGC TTTTGTCCGAGTAGC TERM 384 373987 - 373998 + g 79 -3 -5.31275 | opp_overlap 373987 CTTCATTCGTAGCAA TTTC CTCA GAAA TTTTTTCTACTAAAG CpB0341 375851 - 374112 - | hypothetical protein TERM 385 374372 - 374350 - G 76 -7.6 -4.15066 | opp_overlap 374350, overlap 374346 TACTGATAAATCAAA GGATCTGGAG GAC CTCCAGGACC TTTATGAGCTTCGAG TERM 386 374350 - 374372 + g 86 -9.8 -3.92522 | opp_overlap 374346 374350 TACTGATAAATCAAA GGATCTGGAG GAC CTCCAGGACC TTTATGAGCTTCGAG TERM 387 375425 - 375408 - G 71 -2 -5.11063 | gap 1, opp_overlap 375411, overlap 375410 AGCATCTAAGAAAAA TC-CCTG CATTT CAGGTGA AATACGGTTTCCCTT TERM 388 375993 - 375973 - R 100 -15.5 -6.60239 | opp_overlap 375978 AAAAACAAAAAAAAA CGCAAGGTG AAA CACCTTGCG TAAAAAAACTTATGG TERM 389 376080 - 376122 + r 100 -18.8 -3.2056 | ATCACTCGGATCCGA CTGTCTAGGTATTAAGATTT TGG AGATCTTAATACCGAGACAG TTCCTAACTCTAAAT TERM 390 376161 - 376188 + r 95 -3.4 -6.28631 | gap 1, overlap 376168 CAGGCTTCCTGTCGT TC-CATCACGGGA TAG TCCCGTTCTGCGA TTTTTTTTTAATTTA TERM 391 376168 - 376180 + r 79 -9.1 -3.47063 | overlap 376161 CCTGTCGTTCCATCA CGGGA TAG TCCCG TTCTGCGATTTTTTT ltuB 376504 - 376211 - | LtuB TERM 392 376572 - 376558 - H 70 -2.2 -5.27477 | overlap 376559 ATTTTAATTAAAAAA CTTATT AAG AATAAA CTAATTTTAATCTAA CpB0343 376725 - 377240 + | hypothetical protein TERM 393 378023 - 378009 - gf 76 -10 -2.78395 | opp_overlap 378007, overlap 378006 AATGCGCAGCAATCA CTCCAG TTC CTGGAG GCGTTGGTCCCATGA CpB0344 377231 - 378091 + | methenyltetrahydrofolate cyclohydrolase apbE 378064 - 379008 + | thiamine biosynthesis lipoprotein precursor smpB 379483 - 378986 - | SsrA-binding protein TERM 394 379054 - 379066 + g 84 -6.3 -5.00616 | CTATGATCGTACGAC GCTTA TCA TAAGC TTTTTTCCCACGACA TERM 395 379419 - 379429 + g 71 -4 -4.85599 | AGAGCCTTGCGATTA GAAA CAA TTTC TTTTTGTGCCATAAG TERM 396 380400 - 380416 + G 70 -7.3 -3.87075 | ATCACAAAACTTCTT TCTGGAG AAT TTCCAGA TTTCTCCCCCGTCAT TERM 397 380519 - 380534 + G 73 -2.6 -5.09762 | gap 1, opp_overlap 380513 380514, overlap 380522 ATTTACAAATGAGTC CTCTCAC TCC GTGA-AG TTTTCTTTCTTACCC CpB0347 379692 - 380792 + | DNA polymerase III subunit beta TERM 398 380808 - 380797 - f 72 -5.8 -4.27441 | overlap 380798 ATGATGATTAATAAA CTCC CTAA GGAG AATCCTTTAGGTCAC TERM 399 382460 - 382435 - g 80 -4.7 -5.2166 | GAAGAAGCCAAAAAA GGAAAAGCTAT TCTC ATGGCTCCTCC GAACGCAGGGTCTAC CpB0351 382036 - 383013 + | hypothetical protein CpB0350 384835 - 382970 - | putative metalloproteinase TERM 400 384123 - 384143 + g 78 -10.5 -3.33696 | overlap 384108 384126 TTCGGACGTAGCTCT GAATTCTCC ATA GGAGAGTTC TTCGTTAGGGGCACC TERM 401 384567 - 384557 - G 75 -3.2 -5.17353 | AGACTTACTAAAAAA TCCC TGA GGAA TATCATAGACAGAGT CpB0352 385987 - 384848 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 402 385874 - 385862 - G 70 -2.7 -5.0133 | TAGTTGCTGAAAAAA TAACC TTA GATTA TTTCCATAAGAAGCC CpB0353 387090 - 386116 - | putative integral membrane protein CpB0354 388445 - 387090 - | putative integral membrane protein TERM 403 387497 - 387483 - G 79 -8.6 -4.2243 | opp_overlap 387483 AGAAATATGCCAAAA CACCTT TAA AAGGTG TTCTTGATCCTTTGA TERM 404 387483 - 387497 + g 75 -8.6 -3.79909 | opp_overlap 387483 AGAAATATGCCAAAA CACCTT TAA AAGGTG TTCTTGATCCTTTGA CpB0355 389218 - 388439 - | ABC transporter CpB0356 390173 - 389202 - | periplasmic substrate binding protein TroA TERM 405 390057 - 390038 - G 70 -9.4 -2.79273 | opp_overlap 390036, overlap 390037 390040 CTCTTTCAACACAAT CATGAATC ATGC GATTCATG GATAGTATACAAGGA CpB0357 390301 - 390504 + | hypothetical protein CpB0358 390681 - 391187 + | hypothetical protein TERM 406 391360 - 391349 - f 82 -3 -5.72053 | CAACGAAATAAAAAA CTAT CAGA ATAG AAAATAAAAGTATTT CpB0359 391388 - 392935 + | ATP/ADP-transporter TERM 407 392960 - 392987 + F 100 -12.8 -6.11243 | TCTTACTCTTGTTGA TCCCTACCTGCT TTTT AGTGGGTAGGGA TTTTTTTTATTAACT TERM 408 393052 - 393040 - f 74 -6.3 -4.4078 | TTTTTTCAATCAAAA GGTTA TAA TAACC GTGAGACATTCTGGT TERM 409 393656 - 393642 - g 73 -3.6 -4.93877 | overlap 393637 TCGGATTAAATAAAA CACAAA AAG TTTATG GTTTACTTGGGCCCT TERM 410 394316 - 394299 - g 86 -2.7 -5.75478 | overlap 394309 AACTAGAGAAAAAAA TAGAAAG CAGT CTCCCTA TACGATCTTCCCTAT CpB0360 393053 - 394333 + | hypothetical protein TERM 411 394448 - 394436 - g 74 -4.9 -4.8543 | TAATTTTTATAAAAA GAATA CGT TATTC CCAATCGGGAAAAGA TERM 412 394519 - 394496 - g 82 -4.6 -5.40072 | opp_overlap 394499 394518, overlap 394499 CTTTTTTTAAAAAAA GCATAACAAG CTCT CTCGTTATTC TTCTTCTAGAAGCTA TERM 413 394597 - 394584 - g 73 -2.5 -5.10208 | CAATTTCAATAAAAA TTTTA AAAA TAAAA ACATTTCTATTAATA CpB0361 394393 - 394638 + | hypothetical protein TERM 414 395323 - 395307 - g 73 -5.1 -4.68384 | ATCGAGTTAAGAAAA TTGGAGG CAG CCTCGAA GAAGACCTTAGTGAT TERM 415 395987 - 395962 - g 72 -9.8 -2.81072 | overlap 395956 395961 TCCACTCAAGAGAAG CGTCTTCTCC CAACCT GAAGAAGACG AGTCCTCCCTGCTGA CpB0362 394667 - 396010 + | hypothetical protein CpB0363 397389 - 396088 - | hypothetical protein CpB0364 397959 - 397606 - | hypothetical protein CpB0365 398817 - 397966 - | hypothetical protein CpB0366 399251 - 399075 - | hypothetical protein CpB0367 399327 - 399497 + | hypothetical protein CpB0368 399512 - 401320 + | GTP-binding protein LepA TERM 416 401381 - 401408 + T 89 -3.4 -5.95286 | gap 1, opp_overlap 401381 TAGTGGTGAACTAAA TCTCGAG-CTACC TAG GGTCTTCTCGAGA TTTTTTATTTTTACT CpB0369 402858 - 401419 - | 6-phosphogluconate dehydrogenase CpB0370 404147 - 402879 - | tyrosyl-tRNA synthetase TERM 417 403510 - 403480 - G 100 -11.8 -4.16016 | opp_overlap 403480 403479 GCATTCGTTAATAAA GGATAGGTAAGGCC GTA GGCCTGACCCAACC CTTTACGGCGAATAA TERM 418 403949 - 403927 - G 75 -9.1 -3.72576 | GCTCCCCCGACTAAA GCTATGGGG GTAAT CCCCAGAGC AGCGAGTCTCTTCAA CpB0371 404452 - 404270 - | hypothetical protein CpB0372 405325 - 404552 - | RNA polymerase sigma factor sigma-28 CpB0373 407188 - 405440 - | type III secretion system protein TERM 419 406622 - 406600 - G 79 -7.8 -4.30576 | CGTTCACGAGTAAAA GGATACAACT AAT AATTGCATCC CCTTTAACAAAACGA TERM 420 406665 - 406685 + g 95 -2.5 -6.28401 | opp_overlap 406665 406667, overlap 406667 ATGGCAGAGAAGAAA TCCCCTTCT TCT ATAAGGGCA TTTTTTTGTTTTTTG CpB0374 407466 - 407741 + | ferredoxin IV TERM 421 408697 - 408685 - g 78 -9.1 -3.85969 | overlap 408680 408678 GAAATAAATACAGAA CTCCC TGC GGGAG ATTCAGGAGAACGTT CpB0375 408013 - 409047 + | hypothetical protein TERM 422 409184 - 409172 - f 77 -5.5 -4.88736 | GATGAGGGACAAAAA GGCTC CTA AAGCC TCCAAGATCTTTCCA CpB0376 409199 - 409351 + | hypothetical protein TERM 423 409415 - 409397 - f 74 -3.2 -5.23292 | opp_overlap 409401, overlap 409401 409404 TTACACAAAAGAAAA TATAGAAT TTT ATTCTCTA ATAAAAATTAAATTA CpB0377 409476 - 409943 + | hypothetical protein CpB0378 410430 - 410209 - | hypothetical protein TERM 424 410418 - 410440 + g 75 -8.4 -3.75824 | opp_overlap 410418 CAAGTGGAGAAAAAA CTCTGTGTGG CAC CCACTTAGAG TTCTCTTATGAACTA TERM 425 410440 - 410418 - G 89 -6.2 -5.27923 | opp_overlap 410418 CAAGTGGAGAAAAAA CTCTGTGTGG CAC CCACTTAGAG TTCTCTTATGAACTA TERM 426 410560 - 410544 - H 70 -2.3 -5.34309 | overlap 410546 410547 ATTATCAAAGAAAAA GATTTTT TGT AAAAAAC AACAAATTAAGATAT TERM 427 410744 - 410782 + GH 75 -8.2 -3.78034 | overlap 410762 CAGCTCTTATTCTTG CTTTAGCCATAGCTGTAG GGA CTGCAGTTGTTGCTGGAG TTCTTGGTATGCCTC CpB0379 410602 - 411339 + | hypothetical protein CpB0380 411269 - 411610 + | hypothetical protein TERM 428 412034 - 412046 + G 79 -3.3 -5.26316 | overlap 412028 ATTGCTGCTGGCATT TTGGC TAT GCCTA TTTTTTCTGCCGTAG CpB0381 411851 - 413065 + | hypothetical protein CpB0382 413300 - 414415 + | hypothetical protein CpB0383 414647 - 415006 + | hypothetical protein TERM 429 415079 - 415101 + F 80 -9.2 -3.6053 | opp_overlap 415072 GAAAATATGAGAGTG TCTCCTCCTA TTT TAGTAGGAGA TTAATTTGTAAAACA TERM 430 415158 - 415145 - f 70 -3.9 -4.90471 | ATTTAAAATAGAAAA CTATA AAAT TATAG GGCTTGTCATAGAAA CpB0384 415187 - 415504 + | hypothetical protein TERM 431 417273 - 417254 - g 73 -7.2 -4.24183 | opp_overlap 417272 GACAATAAAGAAGAA GCTGCTAT TTCC ATAGCAAC AGAGTTTGGAGCTCT aarC 415880 - 417721 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CpB0386 417778 - 418464 + | hypothetical protein CpB0387 418621 - 419118 + | hypothetical protein CpB0388 419354 - 419797 + | hypothetical protein TERM 432 419833 - 419802 - T 90 -8.2 -5.10077 | gap 1, opp_overlap 419810, overlap 419810 AAAGAGGTTAAAAAA TCTGA-AAAGGCTCT AAA AGAGCCTTTATGAGA ATCAGAGAAATTACA TERM 433 419810 - 419824 + T 83 -10 -3.87815 | opp_overlap 419810 419802 TAAAAAATCTGAAAA GGCTCT AAA AGAGCC TTTATGAGAATCAGA TERM 434 419824 - 419810 - T 100 -10 -4.33739 | opp_overlap 419810, overlap 419802 TAAAAAATCTGAAAA GGCTCT AAA AGAGCC TTTATGAGAATCAGA CpB0389 420938 - 419844 - | dihydrolipoamide acetyltransferase TERM 435 420440 - 420422 - G 71 -3.1 -4.98531 | opp_overlap 420395 TTCGCAAATGAAAAA GAGGTGT CATAT AGACCTC ATTGAATGTCGTGAG kgd 423668 - 420942 - | alpha-ketoglutarate decarboxylase TERM 436 421801 - 421775 - G 100 -14.6 -3.04188 | overlap 421768 GAGGAGAATTATACA TTTCTACAGAGC CCT GCTCTGCAGAAA GATGGTACAATGGAG TERM 437 421891 - 421905 + g 76 -10 -3.37236 | CGAATAGAATCTTGA CCTGAG AGT CTCAGG TTGTACCCTTCGATT TERM 438 423226 - 423210 - G 82 -8 -4.4572 | AAGATTCCAAACAAA CTCCTG CAACT CAGGAG TACATGTTAGGGTTT TERM 439 423576 - 423562 - G 76 -2.8 -5.41143 | overlap 423564 TACCCTTCAAAAAAA TACTTC CAA GAAGGA TCCAAAGTCTCGTGA CpB0391 423822 - 424268 + | hypothetical protein TERM 440 424412 - 424392 - gT 71 -9 -3.14878 | overlap 424390 TGCTGTAATTCAAGA GGGGCTAA GAAAG CTAGCCCC CATCCAAGAGACGCA TERM 441 424431 - 424443 + GT 74 -4.1 -5.00616 | CCAAGAGACGCATTT CATAG AGA CTGTG TTTTTTGGAGGGGGA TERM 442 425331 - 425359 + GT 75 -8.9 -3.37028 | opp_overlap 425321 AAATAGACAGGGCCG TCTCTTCCACGAT ACA ATAGCGGAAGAGA TTATGGGATATTCCT CpB0392 424234 - 425379 + | coproporphyrinogen III oxidase CpB0393 427312 - 425534 - | hypothetical protein CpB0394 428249 - 427533 - | hypothetical protein TERM 443 428053 - 428038 - G 71 -3.2 -4.96848 | overlap 428023 428039 GGCTCTAGATAAAAA TCCCAA GCCT TAGGGA GGCGCGCATGTTTAC CpB0395 429193 - 428246 - | hypothetical protein TERM 444 429327 - 429297 - R 93 -6.9 -5.61881 | gap 1, opp_overlap 429302 429303 CCTTAAAAAGAAAAA CGGGAA-GGAAACC CAAT GTTTCCCTTTCCCG TTAACATGAGCAATA CpB0396 429877 - 429359 - | putative histone-like protein 2 TERM 445 429989 - 429955 - R 100 -11.1 -6.09888 | opp_overlap 429955 CTTTAATAAAAAAAA TGACTTTTATTTTAA AAAAA CTAAAATAAAAGTCA TTACTAAAACATAAA TERM 446 429955 - 429989 + r 83 -10.4 -3.14931 | opp_overlap 429955 CTTTAATAAAAAAAA TGACTTTTATTTTA AAAAAAC TAAAATAAAAGTCA TTACTAAAACATAAA CpB0397 431518 - 430019 - | leucyl aminopeptidase TERM 447 430806 - 430793 - G 71 -6.7 -4.10612 | ACGGACAACGATAAA GTGTG GATC CACAC AAGAACCCTTGGAAA TERM 448 431406 - 431426 + g 73 -2.6 -5.12617 | gap 1, opp_overlap 431406 431421, overlap 431406 431407 431409 431423 TACGAGGGTTCAAAC T-CGGCTTC AAAA GAAGCTGCA TTTTTTGCATCCTTA CpB0398 432025 - 431543 - | single-strand DNA-binding protein CpB0399 432696 - 432196 - | hypothetical protein TERM 449 433093 - 433083 - g 70 -5.4 -4.57569 | TCATGGGCCTAAAAA GCAT GGA ATGC AATACTCTTTTAAAG TERM 450 434774 - 434748 - g 74 -8 -4.07568 | GTTTGTCCCTCAAAA TGTAGCAACGCC GAC AGTGTCGCTACA GCCCCATACCACGCT CpB0401 432829 - 434823 + | glycogen hydrolase (debranching) CpB0400 435634 - 434816 - | hypothetical protein ruvB 436644 - 435631 - | Holliday junction DNA helicase B CpB0403 437192 - 437007 - | hypothetical protein TERM 451 437161 - 437175 + g 74 -4.2 -5.05116 | CGTGATAAAATTGTA GCCTTT GGG ATAGGC TTTTCTTGTTTATAC dcd 437314 - 437886 + | deoxycytidine triphosphate deaminase CpB0405 437780 - 438226 + | hypothetical protein TERM 452 439370 - 439356 - g 77 -8.6 -3.93262 | GGTTAATAGAGCAAA TCGGAA CGA TTCCGA CAACAGGAATGAAAC CpB0406 438236 - 439471 + | hemolysin CpB0407 439464 - 440678 + | hypothetical protein nifS 441853 - 440738 - | nitrogen fixation protein TERM 453 440843 - 440828 - G 73 -2.5 -5.08255 | opp_overlap 440833 440835 ATGGCTAAAAGAAAA CCTGA GTGTTG CCAGG GTCAACTCTTCATCA TERM 454 441771 - 441786 + g 78 -5.4 -5.01732 | opp_overlap 441785 GGATTCGCGTACGTC CCTTCT ATAA GGAAGG TTTTTTGGAGAAATT CpB0409 442615 - 441878 - | hypothetical protein TERM 455 441978 - 442014 + g 71 -8.2 -3.55378 | overlap 441977 TCTAGGGTGGCGGGC TGGTTCAAGATATC ACGAATATC GATATCTGGAACCA TGTTTGTCAATCCAT TERM 456 442070 - 442050 - G 77 -8.4 -3.98661 | CAGAGGCAGTACAAA TCTTCCTT TTCAC AAGGAAGA TTCCGAATGTCAGGC CpB0410 442843 - 442679 - | hypothetical protein TERM 457 442919 - 442949 + r 93 -12.8 -3.35867 | opp_overlap 442917 AAGGGTTCAACTACG CACCATGAGTTT TAATCAC AAACTCATGGTG TTCCTTAGAAGTTCA CpB0411 443160 - 442954 - | hypothetical protein TERM 458 443558 - 443582 + G 70 -7.9 -3.72893 | AAAGAGTCTTGAACC TTTACCTTGGA ACC TCCAAGGAGAA TTTACTGAAGAGATC CpB0412 443268 - 444026 + | hypothetical protein TERM 459 444132 - 444162 + G 76 -6.8 -4.4634 | opp_overlap 444134, overlap 444130 444134 GGGAAAACACCTTTA AAGCTCCGCCAAGT TTT ATTTGGTGGTGCTC TTCTTGTTTTTTCTT TERM 460 444134 - 444160 + G 81 -9.4 -3.78069 | opp_overlap 444134, overlap 444132 444130 GAAAACACCTTTAAA GCTCCGCCAAGT TTT ATTTGGTGGTGC TCTTCTTGTTTTTTC CpB0413 444036 - 444809 + | hypothetical protein CpB0414 445384 - 444992 - | beta-lactamase regulatory protein CpB0415 446494 - 445385 - | A/G-specific adenine glycosylase sfhB 446515 - 447213 + | pseudouridine synthetase CpB0417 448333 - 447368 - | hypothetical protein CpB0418 449209 - 448463 - | hypothetical protein CpB0419 449451 - 449281 - | hypothetical protein CpB0421 449469 - 450368 + | enoyl-(acyl carrier protein) reductase CpB0420 451227 - 450355 - | putative had hydrolase/phosphatase TERM 461 450435 - 450392 - G 74 -10.4 -2.6472 | gap 1, opp_overlap 450408, overlap 450382 450408 TAATAGCGGACACCA GCTTCCCAAGCTGA-AAGAAT GCC ATTCTTATCTGCTGGGGGAGC TAGAAAGTCCGCATG TERM 462 450950 - 450939 - G 77 -3.6 -5.09225 | overlap 450917 ATTCCACGGAAAAAA GAGC CGTT GCCC CCTCCATACAATCTT CpB0422 451418 - 451227 - | hypothetical protein TERM 463 451315 - 451330 + g 100 -9 -4.60797 | ATTCTTTGCATCCAC CGACAG ACTG CTGTCG TTTTGTCTATGAAAG CpB0423 451711 - 451415 - | hypothetical protein CpB0424 451605 - 452084 + | hypothetical protein CpB0425 452145 - 452630 + | hypothetical protein CpB0426 452638 - 453336 + | DNA polymerase III subunit epsilon CpB0427 453333 - 454112 + | hypothetical protein CpB0429 454090 - 454749 + | hypothetical protein hetA 456703 - 454724 - | HetA TERM 464 454860 - 454872 + gT 71 -3.3 -5.08011 | overlap 454861 AAGAGTTCTTCTTTT GTGCC TTC GGCAA TTTTTTGACCATTTT TERM 465 455212 - 455228 + gT 89 -10.9 -3.68073 | CCTCCTCCTCCATAT CCTTACC ACA GGTAAGG TTATTCCATACAGTA TERM 466 456616 - 456598 - GT 91 -4.6 -5.63517 | overlap 456600 TCCCTAAAGAAAAAA TCTCCATC TGA GATGAAAA GGTAAGTCCTAAAAT CpB0430 457643 - 456669 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 467 457546 - 457580 + gr 73 -7.4 -3.76393 | overlap 457554 AATTTCTGAATCTCT GAAGAAGATAAGAGAG AAT TTTTCTTATTTTTTTC TTTAAATTCGGCTAT TERM 468 457554 - 457572 + gr 95 -3.2 -5.96894 | overlap 457546 AATCTCTGAAGAAGA TAAGAGAG AAT TTTTCTTA TTTTTTTCTTTAAAT CpB0431 458998 - 457718 - | hypothetical protein TERM 469 457856 - 457832 - G 83 -8.7 -4.13767 | opp_overlap 457832 457832 GTCTGCATTCCAAAA TTTTTCTTTGC CTT GCAAAGCAAAA ATTTCCATATAGGGA TERM 470 458043 - 458015 - G 77 -4.6 -4.95843 | gap 2, overlap 458016 458042 ACAGAAAATAGAAAA CGTCATGGCAGAGG TGG CCTCAGCCA--ACG CAGCGTGCACGCGAT TERM 471 459026 - 458989 - G 100 -12.2 -5.3798 | gap 1 TAATAATAACAAAAA TTAGAGTCAAGCCCGGT AAAAA ACCGGTCT-GACTCTAA CAACTGAGACAAAGA CpB0432 459356 - 459054 - | integration host factor beta chain CpB0433 460535 - 459741 - | N-acetylmuramoyl-L-alanine amidase 50K precursor murE 461901 - 460450 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 472 460611 - 460627 + gr 77 -3.7 -5.08824 | overlap 460614 TTGCTTGTTTTCTGT CGATTTC GAT GAAATAG TTTTTTGAATAAAAC TERM 473 461957 - 461945 - R 77 -6.2 -4.82901 | opp_overlap 461944 CTTTTTTCATAAAAA GCCC TCTAG GGGC ATGCTCTCACTCTGA TERM 474 462310 - 462328 + r 83 -9.6 -3.73224 | opp_overlap 462309 462303 ATAAAGAGGAGAACG GGCTCTCT GAT AGAGAGTC TTTGCTCAACGGTAA CpB0435 464335 - 462374 - | penicillin-binding protein 2 CpB0436 464609 - 464322 - | hypothetical protein mraW 465499 - 464606 - | S-adenosyl-methyltransferase MraW CpB0438 465743 - 466288 + | hypothetical protein TERM 475 466581 - 466566 - g 71 -4 -4.87803 | CACTCTTAAATAAAA CAAAAG CTCT CTTCTG TTTGGGACGAATTGA CpB0439 466292 - 466720 + | hypothetical protein TERM 476 467025 - 467003 - f 74 -9.2 -3.09671 | ATCTGAACGCGAAGA GTCATTGCAC TCA GTGCAATGAA TAGTCAAGATGCAAT TERM 477 468196 - 468185 - g 95 -3 -5.92399 | opp_overlap 468188, overlap 468178 CAACAAAACAAAAAA TTTC TGTA GAAA CGATCTTAAAAAGTG dnaA 467113 - 468465 + | chromosomal replication initiation protein CpB0442 468481 - 469068 + | hypothetical protein CpB0441 469612 - 469034 - | hypothetical protein TERM 478 469150 - 469165 + g 82 -4.7 -5.26155 | overlap 469159 ACAAAAAGCAGATAC CTTCC CCTTTA GGAAG TTTTTCTATTTGTCT TERM 479 469350 - 469340 - G 82 -2.4 -5.61596 | overlap 469342 ACTCTTAGAAAAAAA CTGC AGA GCGG GTCGCTTACCTTCAC TERM 480 469513 - 469525 + g 74 -6.3 -4.57341 | AACGCCCTTCTCTAT CTTCT ACG AGAAG TTTTTCCAAGCAGTT TERM 481 470859 - 470896 + G 73 -9.1 -3.53019 | opp_overlap 470858 470878, overlap 470876 CTCTTGGAGAACCAT GGCAGCCTTTGGGATAG GAGC CTTTCTCACAGGCTGGC TCTTTAAGTTTATCA nrqB 469708 - 471219 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 482 471496 - 471481 - g 74 -6.2 -4.45201 | overlap 471484 471485 TTCGATAAAAAAACA CAACTT CTTG AAGTTG CTACAAAAAAAGTCT CpB0444 471223 - 472185 + | Na(+)-translocating NADH-quinone reductase subunit C nqrD 472182 - 472823 + | Na(+)-translocating NADH-quinone reductase subunit D nqr5 472827 - 473597 + | Na(+)-translocating NADH-quinone reductase subunit E CpB0447 473984 - 473649 - | hypothetical protein TERM 483 473902 - 473887 - G 79 -7.6 -4.25053 | CGATAAGATAAAGAA TTCTCC GAAT GGAGAA GGACACTAGAATACC CpB0448 474317 - 474012 - | hypothetical protein CpB0449 474777 - 474427 - | glycine cleavage system protein H CpB0450 476852 - 474774 - | hypothetical protein TERM 484 476356 - 476346 - G 76 -6.8 -4.56597 | overlap 476348 TCTCTCTTCTAAAAA GAGC TTG GCTC TAGCAAGAAATCCTT TERM 485 476720 - 476677 - G 72 -7.6 -3.78022 | gap 1, overlap 476691 TTCATAGCCATGAAA TCTTTCTCTACATACCGCTTC CCT GAAGCGGTA-GTAAAAACAGT CCGACGTGAGGTGGA TERM 486 476707 - 476691 - G 89 -12.3 -2.87211 | overlap 476677 ATCTTTCTCTACATA CCGCTTC CCT GAAGCGG TAGTAAAAACAGTCC TERM 487 476952 - 476910 - R 82 -3.4 -5.74122 | gap 1, opp_overlap 476915, overlap 476911 476913 476914 TAGCAGAGAAAAAAA CCAGGCAGGATCCCTGCAG AGCCTG CAGAAGAGATCCTGT-TGG TAGATTCGCACCCAG TERM 488 476926 - 476914 - R 72 -9.1 -2.73441 | opp_overlap 476915, overlap 476911 476913 476910 AGAGAAAAAAACCAG GCAGG ATC CCTGC AGAGCCTGCAGAAGA CpB0451 478403 - 476973 - | putative phospholipase D CpB0452 479119 - 478400 - | putative lipoate protein ligase TERM 489 479882 - 479865 - g 78 -5.6 -4.82678 | opp_overlap 479860 479871, overlap 479860 TGACAAAAACGAAAA GCTTTC TGCTCT GAAAGC ATATGGTTATGATTT TERM 490 480074 - 480062 - g 77 -4.9 -5.00616 | GTCTGGCTCAAAAAA TCATT CTG AATGA GGTTCCTGATGCCTT TERM 491 480752 - 480733 - g 84 -3.6 -5.49569 | gap 1 GATGAAGAGAAAAAA CTTCGC-GA ACG TCTGCAAAG TATGAAACAGGAATG TERM 492 481769 - 481753 - g 75 -8.7 -3.61398 | TCCTGCCGTCAAGAA GCTCGCA AGC TACGAGC AACCTTGGTTGAAAA clpC 479317 - 481854 + | class III stress response-related ATPase trmU 482917 - 481832 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CpB0455 483141 - 483581 + | hypothetical protein CpB0456 483606 - 484244 + | hypothetical protein CpB0457 484392 - 485342 + | hypothetical protein CpB0458 485514 - 486032 + | hypothetical protein TERM 493 486067 - 486049 - f 74 -3.2 -5.27938 | AGTTCCAAATAAAAA TAACTTAA AGT TTTAGTTA AAAATCTGTTAAGAT TERM 494 486091 - 486072 - f 70 -4.4 -4.66163 | overlap 486074 486082 AGTTTTAGTTAAAAA TCTGTTAA GATT TTAACAAA TAAACTTTATTTAAT TERM 495 486404 - 486381 - g 71 -6.8 -4.2243 | gap 1, opp_overlap 486381, overlap 486401 ATAAATATCCTAAAA TGCGCTATGTC TAT GACACAG-GCA TTATTGCCCTTGCGG CpB0459 486230 - 487483 + | hypothetical protein TERM 496 487728 - 487756 + F 77 -6 -4.72272 | opp_overlap 487739, overlap 487730 TCTATTGGTGCACCA TGCTCCTAAAGC CACAT GCTATGGGAGTA TTTTTGATAAAAAGC TERM 497 488388 - 488378 - g 75 -2.4 -5.32882 | opp_overlap 488378 488380, overlap 488380 TACTAGCACAAAAAA TGGC GGG GCCC TCTGTAGTACAGCAA TERM 498 491748 - 491769 + G 80 -8.7 -3.91028 | opp_overlap 491748 491745 TTCAAACACGAATCA GCAAAGCCC CCCA GTGCTTTGC TTCTTACTTTAGGTT CpB0460 487788 - 492011 + | Omp11 TERM 499 491999 - 492040 + T 77 -5.5 -4.84359 | gap 1, opp_overlap 492014, overlap 492000 AAACTGTGGAACTCG TTAT-TCTTTCTAAGATTCT CCG AGAATCTTAGAAAAACATAC TTTTTATAAAGATGA TERM 500 492000 - 492039 + T 75 -9 -3.50133 | gap 1, opp_overlap 492014, overlap 491999 AACTGTGGAACTCGT TAT-TCTTTCTAAGATTCT CCG AGAATCTTAGAAAAACATA CTTTTTATAAAGATG CpB0461 492191 - 492027 - | hypothetical protein TERM 501 493570 - 493560 - g 71 -3.2 -4.96848 | overlap 493541 493565 TCCCCTACAGAAAAA GCAA TCG CTGC AAACGTCACCTCTAC CpB0462 492273 - 495083 + | Omp5 TERM 502 495943 - 495929 - g 84 -6.4 -5.03314 | opp_overlap 495931, overlap 495931 TTTATTGTGAAAAAA CAGGAG AGA CTCCTA CTCTTACTATCTCTG TERM 503 495941 - 495931 - g 71 -6.8 -4.14633 | opp_overlap 495931, overlap 495929 TATTGTGAAAAAACA GGAG AGA CTCC TACTCTTACTATCTC CpB0463 495127 - 497919 + | outer membrane protein 11 TERM 504 497928 - 497953 + F 100 -14.9 -3.78934 | ATTCTAGTTCCTACT TTCCTCCCTAA ACTT TTAGGGAGGAA TTCTTATAAAAACCC TERM 505 498580 - 498566 - g 78 -10 -3.50853 | opp_overlap 498571 CTTTTCTAATGACAA TGGAGG CGC CCTCCA AGGCAGCTCTATCAG TERM 506 499881 - 499861 - g 80 -6.1 -4.84359 | TTACCTGGACAAAAA CAGGATACA ATC CGAATCCTG AGCGTCGTGGAACCT CpB0464 498069 - 500855 + | outer membrane protein 10 TERM 507 501072 - 501034 - T 100 -12.5 -4.3767 | gap 1, opp_overlap 501037 501070, overlap 501037 501038 CTAGATCACAAGAAA GAATGGGCAGAGTACGTG ATCT CACGAACTCTGCCCGT-C TTAGAATCCAAAGAC TERM 508 501070 - 501037 - T 100 -15.3 -4.29119 | opp_overlap 501037, overlap 501034 501038 GATCACAAGAAAGAA TGGGCAGAGTACGTG ATCT CACGAACTCTGCCCG TCTTAGAATCCAAAG TERM 509 501037 - 501070 + T 100 -17.5 -3.05844 | opp_overlap 501037 501034 501038 GATCACAAGAAAGAA TGGGCAGAGTACGTG ATCT CACGAACTCTGCCCG TCTTAGAATCCAAAG TERM 510 501069 - 501038 - T 100 -18.8 -3.16387 | opp_overlap 501037, overlap 501037 501034 ATCACAAGAAAGAAT GGGCAGAGTACGTG ATCT CACGAACTCTGCCC GTCTTAGAATCCAAA TERM 511 501070 - 501087 + T 70 -4.1 -4.82667 | opp_overlap 501034 TCACGAACTCTGCCC GTCTTAG AATC CAAAGAC TTTTTAGTATACTAA CpB0465 502305 - 501196 - | hypothetical protein TERM 512 501304 - 501292 - G 71 -6.9 -4.11664 | CTCACAAGAAGCAAA CCCAC ATT GCGGG CTCAAAGAAAGTCTC CpB0466 502516 - 502346 - | hypothetical protein TERM 513 502511 - 502497 - G 100 -10 -5.04249 | overlap 502477 502474 CCCTTAAAAAAGAAA GAGACG TAC CGTCTC TGCAACTCTAATCTT TERM 514 502678 - 502724 + r 83 -7.3 -4.7254 | gap 1, opp_overlap 502669 502687, overlap 502679 502680 502684 502686 502687 TTAAAACGTGTTTGT AACAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTGCC TTTTTAATCCCCGAT TERM 515 502679 - 502723 + r 87 -10.8 -3.43042 | gap 1, opp_overlap 502669 502687, overlap 502678 502680 502684 502686 502687 TAAAACGTGTTTGTA ACAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTGC CTTTTTAATCCCCGA TERM 516 502680 - 502722 + r 93 -14.3 -2.65504 | gap 1, opp_overlap 502669 502687, overlap 502679 502678 502684 502686 502687 AAAACGTGTTTGTAA CAAGAAAGGCAGAGTACGTG ACCT CACGAACTCTGCCC-TCTTG CCTTTTTAATCCCCG TERM 517 502684 - 502719 + r 85 -10.4 -3.47218 | opp_overlap 502687, overlap 502680 502679 502678 502686 502687 CGTGTTTGTAACAAG AAAGGCAGAGTACGTG ACCT CACGAACTCTGCCCTC TTGCCTTTTTAATCC TERM 518 502686 - 502717 + r 91 -13 -3.29762 | opp_overlap 502687, overlap 502684 502680 502679 502678 502687 TGTTTGTAACAAGAA AGGCAGAGTACGTG ACCT CACGAACTCTGCCC TCTTGCCTTTTTAAT TERM 519 502687 - 502716 + r 100 -16.5 -2.56773 | opp_overlap 502687, overlap 502686 502684 502680 502679 502678 GTTTGTAACAAGAAA GGCAGAGTACGTG ACCT CACGAACTCTGCC CTCTTGCCTTTTTAA TERM 520 502716 - 502687 - R 100 -16.5 -4.44667 | opp_overlap 502687 502686 502684 502680 502679 502678 GTTTGTAACAAGAAA GGCAGAGTACGTG ACCT CACGAACTCTGCC CTCTTGCCTTTTTAA CpB0467 505611 - 502828 - | outer membrane protein 5 TERM 521 505098 - 505108 + g 74 -6.8 -4.26076 | opp_overlap 505098 GATTCTTGGTAGAAA TGGC TCC GCCA TTTTCCTCACAGTAA TERM 522 505304 - 505287 - G 71 -7 -4.19624 | overlap 505283 CAGTTGTAACAGAAA GTGCTG CGCCTT CAGCAC TAGACTTAATATTTA TERM 523 507978 - 507967 - g 74 -4.4 -4.99035 | TCAGCTATAGAAAAA TTCC CTAG GGAA ATTCCCCTAGCCTTG CpB0468 505774 - 508560 + | outer membrane protein 4 TERM 524 508571 - 508591 + F 100 -11.2 -4.53607 | opp_overlap 508571 TCTAGATTGCTAAAA CTCCCTAG TTCTT CTAGGGAG TTTTCTCATACTTTT TERM 525 508591 - 508571 - f 100 -11.2 -4.13014 | opp_overlap 508571 TCTAGATTGCTAAAA CTCCCTAG TTCTT CTAGGGAG TTTTCTCATACTTTT CpB0469 508818 - 510362 + | outer membrane protein 13 TERM 526 510411 - 510440 + F 89 -13.7 -2.87683 | opp_overlap 510407 CTTTAAGAAGATTTT GGGACCTATCTGT ATTC AGAGATAGGTCCC TCTATGCACACATGT TERM 527 510468 - 510478 + F 72 -8.2 -3.36216 | overlap 510467 TGTTCACGAGTCTCG GGCG TAG CGCC ATTTTCTACTTTACA TERM 528 513318 - 513308 - g 77 -8.2 -3.95554 | opp_overlap 513306, overlap 513306 GCATCCAAGAAAATA CCCC TGA GGGG AGGATTTTTGGACAC CpB0470 510733 - 513654 + | outer membrane protein 14 TERM 529 513676 - 513687 + F 72 -5.8 -4.4572 | TTTAACGACAGGGTT GAGG CATG CCTC TTTCTTTCAAATCTT CpB0471 513681 - 516617 + | outer membrane protein 11 TERM 530 516620 - 516638 + T 100 -11.8 -4.52589 | opp_overlap 516620 ATCCACATTTTAAAA CTCTAAGC TCT GCTTAGAG TTTTCTGTAGCCCCG TERM 531 516638 - 516620 - T 100 -11.8 -4.1721 | opp_overlap 516620 ATCCACATTTTAAAA CTCTAAGC TCT GCTTAGAG TTTTCTGTAGCCCCG CpB0472 516834 - 516670 - | hypothetical protein CpB0473 518874 - 516955 - | hypothetical protein TERM 532 518778 - 518794 + g 77 -6.5 -4.62168 | opp_overlap 518777 518778 518780 CGATTCTAGAAATAT GATCTCG GCC CGCGATC TTTTCTACTTTCAGT TERM 533 519151 - 519137 - R 71 -3.5 -5.11836 | overlap 519138 ACACTGAAAATAAAA CGCTC TTGTT GAGCA CGTTTTCCTAACAAA CpB0474 521366 - 519477 - | hypothetical protein TERM 534 521449 - 521423 - R 76 -4.4 -5.16472 | opp_overlap 521426, overlap 521427 AAAAACTTGAAAAAA GCAATCTCTAAG ATA CTTAGCGACTCC TATAGCCACAAGAAA CpB0475 523821 - 521734 - | hypothetical protein CpB0476 524548 - 524117 - | hypothetical protein CpB0477 525341 - 524490 - | hypothetical protein TERM 535 524843 - 524855 + gr 71 -6.3 -4.23892 | opp_overlap 524842 CCTCTGGGGACAATC CTTCT TCC AGAAG TTTTGCATCATTACA CpB0478 525992 - 525342 - | hypothetical protein TERM 536 526423 - 526413 - R 84 -5.4 -5.4833 | overlap 526419 TGACCTAAGAAAAAA GAAG AAT CTTC AAAAAAGAGCTCTGC TERM 537 526483 - 526469 - R 93 -8.6 -4.72007 | opp_overlap 526469 526471 GTTCATCAAAACAAA CACCTT AGA AAGGTG TGTCTAATTAGTTCC TERM 538 526469 - 526483 + r 71 -8.6 -3.03554 | opp_overlap 526469, overlap 526471 GTTCATCAAAACAAA CACCTT AGA AAGGTG TGTCTAATTAGTTCC CpB0479 528553 - 526535 - | hypothetical protein CpB0480 529960 - 528689 - | hypothetical protein TERM 539 529032 - 529044 + gr 82 -7.7 -4.56597 | opp_overlap 529032 529031 CAGAATGCTAAGAAT CCTTC CCA GAAGG TTTTTGAAGGGAGCG CpB0481 530343 - 529864 - | hypothetical protein TERM 540 529947 - 529959 + g 75 -3.3 -5.14563 | overlap 529948 CAGTTTGGAGTTCCC AGGAG CTG CTCCA TTTTTTCGTAGGGAG CpB0482 530713 - 530369 - | hypothetical protein TERM 541 530421 - 530436 + g 86 -9 -4.27886 | opp_overlap 530432, overlap 530432 TTCCCCTCGTCTCTA GGCTCT AATG AGAGCC TTTGTCTCTTTAGAA TERM 542 530474 - 530488 + g 70 -10 -2.56271 | overlap 530473 530470 AACTCGACTTCTATG GTCGTG ACC CACGAC GTGTTCTACTCGCAC TERM 543 530723 - 530709 - G 72 -7.2 -4.00684 | opp_overlap 530709 530707 AGAGAAAAGTAATAA CTCATT AAA AATGAG TCTTTTAAAAAATAC CpB0483 530936 - 530766 - | hypothetical protein TERM 544 530809 - 530796 - G 70 -3.9 -4.86773 | CAAAATCAGCAAAAA TCTAT AGGA ATAGA GATAAGTGGCTCTTA TERM 545 530993 - 530981 - H 73 -4.1 -4.93365 | opp_overlap 530983, overlap 530982 530983 CCTGAGAACCAAAAA CTGCT CTA AGCAA AGTATGCAAAGAGCT TERM 546 531282 - 531305 + G 79 -11.1 -3.13788 | opp_overlap 531282, overlap 531280 531278 GTATTGGCTAATGAA GGTCTCCAA CTTCCT TTGGAGACC TATATTACATTAAGT TERM 547 531305 - 531282 - g 81 -11.1 -3.34344 | opp_overlap 531282 531280 531278 GTATTGGCTAATGAA GGTCTCCAA CTTCCT TTGGAGACC TATATTACATTAAGT CpB0484 531246 - 534041 + | outer membrane protein 11 TERM 548 534874 - 534862 - g 71 -4.7 -4.72201 | opp_overlap 534862 TGCGATAAAAAATAA CTCCG GGT CGGTG ATTTTCAATAACAAC TERM 549 535181 - 535168 - g 71 -6.7 -4.19746 | CGCATTTCAAAATAA TGAGG TTTT CCTCA CCACATTTGGTAGAT CpB0485 534080 - 536938 + | outer membrane protein 5 TERM 550 537011 - 536979 - f 70 -7.2 -3.8591 | CTTTAGAATTAACAA CTATCCGA-TGAGCTA CGT TAGCCCAATCGG-TAG AGGACTCCCTCAAAA CpB0486 537184 - 537936 + | outer membrane protein 10 TERM 551 538933 - 538922 - g 93 -4.4 -5.78622 | TGACTGCAAAAAAAA TCGA TACT TCGA ATCTCATTGTAGAAG CpB0487 538041 - 538964 + | outer membrane protein 11 CpB0488 538858 - 540036 + | outer membrane protein TERM 552 540672 - 540685 + G 77 -3.7 -5.19212 | opp_overlap 540664 540672 ACATTAAGGACAACA CTGGC CCTT GCCTG TTTTTTAATAATGCT CpB0489 540065 - 542905 + | outer membrane protein 11 TERM 553 542967 - 542945 - T 73 -7.1 -4.00532 | overlap 542951 CCTGTAAAGACCAAA TAGAGAGTA GTGAA CACTCTCTA CCATCATGAATCTTA CpB0490 545406 - 543079 - | hypothetical protein TERM 554 545503 - 545532 + r 81 -9.5 -3.75629 | opp_overlap 545496 545502 545500 545504, overlap 545504 TAAAATAATCAACAT ATTGAAGAGTTTT AATT AAAACTCTTCAAG TTTCCCTTGCGCATA TERM 555 545531 - 545504 - R 91 -13 -3.25762 | opp_overlap 545503 545504, overlap 545496 545502 545500 AAAATAATCAACATA TTGAAGAGTTTT AATT AAAACTCTTCAA GTTTCCCTTGCGCAT TERM 556 545504 - 545531 + r 87 -13 -2.85056 | opp_overlap 545496 545504 545502 545500, overlap 545503 AAAATAATCAACATA TTGAAGAGTTTT AATT AAAACTCTTCAA GTTTCCCTTGCGCAT CpB0491 546914 - 545568 - | hypothetical protein TERM 557 546616 - 546635 + g 73 -8.6 -3.5936 | overlap 546599 546608 546607 TCAGGACGCGCTTGA GGGGTTTT TTTA AAGACCCC TTTAACGCCTTTCCA TERM 558 546995 - 546978 - R 83 -2.1 -5.79595 | overlap 546971 546965 TGTTAAAATAAAAAA TATTTTA AAAA CAAAATA TAAATTAAAATAAAC CpB0492 547115 - 546954 - | hypothetical protein CpB0493 548858 - 547125 - | hypothetical protein TERM 559 547529 - 547550 + g 76 -2.9 -5.26918 | overlap 547534 CCTCTTCACGAATTG CAGCGTCAG TCTT CTGAATCTG TTTTTTGTAGACTGT TERM 560 548084 - 548104 + g 71 -8.3 -3.53444 | AGGCTCTCCACTTTC CGATACTAC TAT GGAGTATCG TTTGCAAAACCGTCG CpB0494 551165 - 549003 - | glycogen branching enzyme TERM 561 550732 - 550717 - G 75 -5.4 -4.77757 | TGCCAAAAATTAAAA TCTCCG ACTA CAGAGA CTCTCTGCGCATGGG TERM 562 551075 - 551059 - G 71 -9.5 -2.9294 | overlap 551056 AAAATAACAATATGA TCTGAAG AAT CTTCAGA AGCAAGGATCCCTAA CpB0495 552165 - 551176 - | hypothetical protein TERM 563 551871 - 551883 + g 78 -9.1 -3.87149 | GGGGCCCTGCTTGCG CTGCC GAA GGCAG TTTCCCTTTGATAGA CpB0496 553427 - 552162 - | hypothetical protein TERM 564 552635 - 552625 - G 81 -5.4 -5.20154 | opp_overlap 552628, overlap 552596 ACACAATCTAAAAAA TCTC CGC GAGA ATACTTCCGGTTCAT CpB0497 554946 - 553528 - | GTP binding protein hflX TERM 565 554312 - 554332 + g 76 -9.7 -3.36327 | opp_overlap 554312, overlap 554298 CGCTGTTTGATCACA GCTTTCAGC TGT GCTGACAGC TTATGGATACGCTCA TERM 566 554332 - 554312 - G 72 -9.7 -2.78384 | opp_overlap 554298 554312 CGCTGTTTGATCACA GCTTTCAGC TGT GCTGACAGC TTATGGATACGCTCA CpB0498 555746 - 554934 - | putative metal dependent hydrolase TERM 567 555699 - 555666 - G 88 -9.5 -4.33274 | opp_overlap 555677, overlap 555667 TCTACATGAGCAAAA CGGCACGGGAATTCC TTCG GGATTTCCTGTGCCT AAAAATACTAATTTC TERM 568 555698 - 555667 - G 95 -13 -3.19482 | opp_overlap 555677, overlap 555666 CTACATGAGCAAAAC GGCACGGGAATTCC TTCG GGATTTCCTGTGCC TAAAAATACTAATTT CpB0499 556624 - 555968 - | hypothetical protein CpB0502 559013 - 558279 - | arginine-binding periplasmic protein 2 precursor TERM 569 558782 - 558794 + g 100 -7.7 -5.58209 | TTCCTGCTAAAATTG CATCG ATA CGATG TTTTTTTAAATTTAA TERM 570 560666 - 560656 - g 73 -5.4 -4.614 | opp_overlap 560661 560664, overlap 560661 TGCAACTATAGAAAA CAGA CGA TCTG GGGATCTCCCTTGGT TERM 571 560661 - 560690 + G 80 -6.4 -4.82091 | opp_overlap 560656 560661, overlap 560664 CTATAGAAAACAGAC GATCTGGGGATC TCCCTT GGTCTCCAGCTC TTTCTTTCTTTGCTT CpB0503 559187 - 562288 + | hypothetical protein CpB0504 562291 - 563148 + | 3-deoxy-7-phosphoheptulonate synthase TERM 572 563262 - 563276 + F 76 -4.4 -5.11063 | opp_overlap 563264, overlap 563259 AATTTTGTTTTATTA TATTTA ATA TAAATA TTTTTATTGAATAGT CpB0505 563359 - 563553 + | hypothetical protein TERM 573 563605 - 563566 - T 83 -5 -5.55001 | opp_overlap 563566, overlap 563570 563571 TAATAAAAAATAAAA CGAACCCCTCTTCTTCTT GGAA AAGAAGGAGAGGTATCAG ATTCTAAACACAACT TERM 574 563599 - 563570 - T 73 -7.3 -3.989 | gap 1, opp_overlap 563566, overlap 563566 563571 AAAAAATAAAACGAA CCCCT-CTTCTTCT TGG AAAAGAAGGAGAGG TATCAGATTCTAAAC CpB0506 565057 - 563723 - | prolin permease protein TERM 575 565059 - 565043 - G 82 -2.3 -5.65496 | overlap 565046 CAGGAAAAATAAAAA TAATGAA AAA TTCATAA AATAAAGAACTCCAC TERM 576 565056 - 565046 - G 71 -4 -4.855 | overlap 565043 GAAAAATAAAAATAA TGAA AAA TTCA TAAAATAAAGAACTC CpB0507 566983 - 565430 - | hypothetical protein TERM 577 565753 - 565739 - G 84 -2.8 -5.626 | opp_overlap 565739 CATTCCAGAAAAAAA GCTC CATCCCT GAGC TTGCTGTCCTGAAAG TERM 578 567051 - 567039 - R 79 -9.1 -3.48153 | ATCAACAATTGATAA CGGAG GGA CTCCG AGCCGAACAAGGATC CpB0508 567417 - 567085 - | histidine triad homology CpB0509 568286 - 567414 - | hypothetical protein TERM 579 567864 - 567853 - G 75 -2.2 -5.25772 | AAAGCACAAGAAAAA TCCG CATC CGAA TTAGTTTCTTCTTCC TERM 580 569760 - 569787 + G 74 -9.2 -3.32993 | gap 1, overlap 569761 TTTATTTTCCCGCTA C-TTCCCTTCAGC ATC GCTGAAGGGCATG TTCCTCTCTAACTAC TERM 581 569761 - 569785 + G 95 -12.9 -3.23045 | overlap 569760 TTATTTTCCCGCTAC TTCCCTTCAGC ATC GCTGAAGGGCA TGTTCCTCTCTAACT TERM 582 569841 - 569859 + G 78 -6 -4.85599 | CTATTTTCAGATTCC CTCTCC CACTTCT GGAGAG TTTTTCTCGAATCGA CpB0510 568600 - 570657 + | hypothetical protein CpB0511 571793 - 570654 - | hypothetical protein TERM 583 571415 - 571401 - G 75 -5.8 -4.64076 | AATCAAAGGAGAAAA CAAAAT GGT ATTTTG AGGTAACCATACCCC TERM 584 571897 - 571877 - H 77 -9.1 -3.16872 | opp_overlap 571877, overlap 571870 571876 AGCAAGAGTGAAAAG CTGTCTTCA TCG TAAAGACAG TGTATAGAGAAGAAA CpB0512 571973 - 572128 + | hypothetical protein CpB0513 572325 - 572173 - | hypothetical protein CpB0514 572685 - 572464 - | hypothetical protein CpB0515 572852 - 574117 + | L,L-diaminopimelate aminotransferase CpB0516 574114 - 575136 + | hypothetical protein CpB0517 575410 - 575138 - | hypothetical protein CpB0518 576356 - 575403 - | hypothetical protein TERM 585 575668 - 575654 - G 91 -8.6 -4.74539 | overlap 575659 AAGAACGGAATAAAA GTAAGG TGT CCTTAC GATTCGCAACCACAC CpB0519 577681 - 576524 - | hypothetical protein TERM 586 579301 - 579287 - g 70 -7.8 -3.61328 | overlap 579279 579288 ATGAACACGGGCAAA CCCAGC AGT GCTGGA TGGGGACCTACGGCA CpB0520 577981 - 579687 + | prolyl-tRNA synthetase TERM 587 579905 - 579894 - g 75 -5.8 -4.66163 | AGTTGTACCTAAAAA CAGG GCAG CCTG TAGGGTCTAAAACTT TERM 588 580425 - 580392 - g 100 -13.3 -2.96274 | overlap 580387 580399 580418 TCCTGCAGAACTACA TCCGAAAGCTCCCCA CAAA TGAGGAACTTTCGAA AAAAGAAGAACACCT hrcA 579752 - 580975 + | heat-inducible transcription repressor TERM 589 581404 - 581390 - g 71 -8.6 -3.55801 | ACGAAGCGGTGCAAA CAGAAG AGA CTTCTG AAGTTCCTGAGGGGA grpE 580972 - 581526 + | hypothetical protein TERM 590 582979 - 582964 - g 70 -7.6 -3.57462 | GAGGCCATCCTCAAA TCGAAG TCTC CTTCGA TATCGATGCAAACGG TERM 591 583055 - 583045 - g 75 -5.4 -4.84673 | GTAAAGAACAGAAAA TTCG TAT CGAA GCAAGCTCAGGACTT TERM 592 583276 - 583262 - g 70 -5.6 -4.29176 | overlap 583263 AGAGCGAATCGAAAA CGTGCG CAA CGCACT CAAAGATGACGCTCC dnaK 581556 - 583538 + | molecular chaperone DnaK TERM 593 583564 - 583593 + T 79 -9.3 -3.44146 | overlap 583565 583587 CAATTTAAGTTTCTC TATTCCCATCCTC ATAA GAGGATGGGAAAC TTCCTTATAAACAGA TERM 594 583565 - 583592 + T 86 -12.8 -2.66274 | overlap 583564 583587 AATTTAAGTTTCTCT ATTCCCATCCTC ATAA GAGGATGGGAAA CTTCCTTATAAACAG CpB0524 583808 - 583575 - | hypothetical protein TERM 595 584757 - 584733 - g 70 -5.7 -4.3898 | opp_overlap 584733, overlap 584736 ATGACGTTTACAAAA TCAGGTCATCT TTC AGATTACCAGA TTTTCCGTAGCGTCA CpB0525 583809 - 585839 + | proteins of ribonuclease TERM 596 586281 - 586269 - gf 78 -7.7 -4.17048 | CTCTTTGGAAAACAA TAGGC AAC GCCTA AATACCCCAGCTCTC CpB0526 585841 - 586431 + | N-methylpurine-DNA glycosylase TERM 597 586537 - 586554 + GF 70 -7.1 -3.78778 | TTATTCTCCTTCCTC TAGCAAT TACT ATTGCTA TTGTTACTATGATCA TERM 598 586575 - 586610 + GF 76 -7.6 -3.92832 | opp_overlap 586574 586575 ACTATGATCATGAAC TTCCTAACCCAACCCT TCGT AGGCTTGGCTTCGGAA TTCTTTGAGAAATTT CpB0527 586383 - 587165 + | hypothetical protein CpB0528 587283 - 587447 + | hypothetical protein TERM 599 587609 - 587590 - g 78 -4.2 -5.13473 | AGTACAGCGAAAAAA GTCACAGG TTTA CCTAAGAC CCCTATTTTAAAATA CpB0529 587464 - 587625 + | hypothetical protein TERM 600 587705 - 587679 - g 79 -6.7 -4.59591 | opp_overlap 587679 AAGAAAAGATCAAAA TACATGTTTCC AATGA GCAAACATGTA TTCCTATTCATTTGG CpB0530 587657 - 588133 + | hypothetical protein TERM 601 588137 - 588113 - f 89 -3.5 -5.80364 | ATGTTAAGAAAAAAA CATGCTTTGCT AAC AGCTTAACATG CTCCATATTCTTTTA TERM 602 588282 - 588261 - g 86 -8.7 -4.32857 | TTCTTCAAAGATAAA GGAAGAGAG TATC CCCCCTTCC CCAGTGCTCCTACAA CpB0531 588135 - 589298 + | hemolysin C CpB0532 589463 - 589813 + | sigma F regulatory factor TERM 603 591223 - 591233 + G 74 -6.8 -4.2461 | opp_overlap 591215 591222 GATTAAAGAAGAATC TCCG CTT CGGA TTTGTTGCTGGGGGT CpB0533 589875 - 591737 + | hypothetical protein TERM 604 592993 - 592964 - gf 71 -6.5 -4.10925 | opp_overlap 592964 ACATATGGGGGAAAA GGTTTTCCAGATG GCCT CATCTAAAGAACC TATTAAAATGGACGC CpB0534 591924 - 593078 + | hypothetical protein CpB0535 593051 - 593845 + | hypothetical protein ubiE 593793 - 594506 + | ubiquinone/menaquinone biosynthesis methyltransferase TERM 605 594525 - 594509 - T 84 -6.5 -5.06472 | opp_overlap 594508, overlap 594511 AGAGAAACAATAAAA CATGGAG GAT CTCCAAG CTTGGTCGCAAGGAG TERM 606 594523 - 594511 - T 78 -7.7 -4.12859 | opp_overlap 594508, overlap 594509 AGAAACAATAAAACA TGGAG GAT CTCCA AGCTTGGTCGCAAGG CpB0537 596193 - 594574 - | hypothetical protein CpB0538 596953 - 596114 - | hypothetical protein TERM 607 596459 - 596418 - GR 79 -8 -3.922 | AAATCCCGAATCAAA CAGGCCCAATCCACCAAA GGCTCG TTCGGTGGCTCAGGGCTG AAATGCTCCATAAAT CpB0539 598125 - 597151 - | hypothetical protein dapF 599008 - 598223 - | diaminopimelate epimerase clp 599540 - 598965 - | ATP-dependent Clp protease proteolytic subunit glyA 601119 - 599560 - | serine hydroxymethyltransferase TERM 608 600445 - 600428 - G 70 -5.5 -4.48987 | overlap 600431 TCTGCATAATCAAAA CACTCCG TATC CGGATTG ACATCATAGGGGAAG hemD 601309 - 601980 + | uroporphyrinogen-III synthase CpB0544 602045 - 602377 + | hypothetical protein CpB0545 602425 - 603504 + | hypothetical protein TERM 609 604298 - 604280 - g 74 -4.7 -4.89063 | TCATTGAAAAAGAAA TTTTTGA AAGCA TCAAAAA GATTAATGAAGAAGG CpB0546 603844 - 604608 + | hypothetical protein kpsF 606018 - 605029 - | KpsF CpB0548 607226 - 606045 - | branched-chain alpha-keto acid dehydrogenase subunit E2 CpB0549 608484 - 607240 - | proton/sodium glutamate symport transporter TERM 610 607989 - 607976 - G 70 -3.7 -4.76123 | AAACCATCAATAAAA CGCTC GACA GGGCG GCCACGTTCTCCAGA lpxK 609581 - 608484 - | tetraacyldisaccharide 4'-kinase TERM 611 609147 - 609120 - G 77 -8.4 -3.98762 | opp_overlap 609144, overlap 609121 AAGGAGAATACCAAA TTTCTCTGCAGC GCGT GCTGCAGAGATC CTCCGGTCCTTATGC TERM 612 609146 - 609121 - G 86 -11.9 -2.98173 | opp_overlap 609144, overlap 609120 AGGAGAATACCAAAT TTCTCTGCAGC GCGT GCTGCAGAGAT CCTCCGGTCCTTATG TERM 613 609734 - 609722 - R 70 -2 -5.27477 | AGCTTAATTAAAAAA TTGT GTTAA ACAA AAAACTAATATAATT spoU 610576 - 609779 - | tRNA methylase TERM 614 610071 - 610031 - G 100 -13.5 -3.61398 | gap 1, overlap 610032 TTCCTGCTTGAACAA CTCCTTCCCTTCCTCTCT TGAAAT AGAGAGGATGGGAA-GAG AAAAGACAGCTCCTA TERM 615 610072 - 610032 - G 93 -13.5 -2.76696 | gap 1, overlap 610031 TCCTGCTTGAACAAC TC-CTTCCCTTCCTCTCT TGAAAT AGAGAGGATGGGAAGAGA AAAGACAGCTCCTAA CpB0552 611391 - 610564 - | putative SAM dependent methyltransferase CpB0553 611996 - 611394 - | riboflavin synthase subunit alpha CpB0554 612252 - 612710 + | transcriptional regulator NrdR CpB0555 612735 - 613109 + | general stress protein 160 TERM 616 613361 - 613372 + G 70 -7.2 -3.8599 | overlap 613359 ATATTTGTGATTCTT GGCC TCCT GGCC TATCTTTTTTTTAAA lspA 613145 - 613621 + | lipoprotein signal peptidase TERM 617 613631 - 613615 - f 78 -2.3 -5.59564 | overlap 613628 ACAAACTGAAAAAAA GAGAT AATATAG ATCTC TTCAAGAGAAGCTAA CpB0557 613667 - 615016 + | alanine/glycine transporter protein CpB0558 615155 - 615514 + | hypothetical protein CpB0559 615519 - 615836 + | hypothetical protein TERM 618 617572 - 617561 - g 71 -3 -4.98672 | opp_overlap 617561, overlap 617556 CTGAAAAAGATAAAA TTGT CATC ACAA ATTTAGGATTCAACC CpB0560 616027 - 618870 + | Omp11 TERM 619 618946 - 618894 - f 76 -4.2 -5.06016 | opp_overlap 618907, overlap 618907 ACTATAGAAATAAAA GAAGACTTAAAAAGCGCGTGGTTA TCATT CAAACACGCGCTTTTTTATCCCTT GCCTAATTTATCCAT TERM 620 618933 - 618907 - f 93 -8.7 -4.77216 | opp_overlap 618907, overlap 618894 AAGAAGACTTAAAAA GCGCGTGGTTA TCATT CAAACACGCGC TTTTTTATCCCTTGC TERM 621 618907 - 618933 + F 90 -8 -5.31456 | opp_overlap 618894 618907 AAGAAGACTTAAAAA GCGCGTGGTT ATCATTC AAACACGCGC TTTTTTATCCCTTGC TERM 622 619029 - 619040 + G 75 -5.8 -4.7373 | opp_overlap 619021 CTATGAAGTGGCTAC CAGC TACA GCTG TTTTTGCTGCCGTAC TERM 623 620609 - 620584 - g 79 -6.9 -4.72272 | opp_overlap 620586 620589 CCGCTTTAGTAAAAA TAAGACCGGAA ATTA TTCCGCTCCTA TTACCAAAGCGGCTA CpB0561 619016 - 624187 + | outer membrane protein omp5 CpB0562 624492 - 625328 + | adhesin B protein TERM 624 625562 - 625578 + G 72 -6.5 -4.29304 | overlap 625563 ACCCATTCCATGATC GGTTGGG TTC CCCAACA TTTCTCTTATGATCC TERM 625 625563 - 625577 + G 74 -10 -3.16859 | overlap 625562 CCCATTCCATGATCG GTTGGG TTC CCCAAC ATTTCTCTTATGATC TERM 626 625942 - 625952 + G 81 -4 -5.36441 | opp_overlap 625942 CCATACGACGAATTA CTTT AAT AAAG TTTTTTATATGAACA CpB0563 625325 - 626062 + | ABC transporter ATPase TERM 627 626754 - 626768 + GT 70 -3.6 -4.89393 | CATCTCGGTCCTCTT GAATAT CTT ATGTTC TTTTTCTGGAATTTG obgE 627851 - 626844 - | GTPase ObgE CpB0565 626041 - 626928 + | iron transport protein TERM 628 626952 - 626992 + gT 71 -4 -4.87803 | overlap 626949 626954 GCGCTTTTGGAAGCT TTGGAGGCATTCTTCCTG TTCGT CAGGAAGAAGATCATCAA TTTTATTTAAAGCTA TERM 629 627081 - 627097 + gT 85 -8.7 -4.08767 | overlap 627073 TTCTAAGTCTTCTTC GGGAGAG TTT CTCTCTC TTTTGGAGACATCGA TERM 630 627198 - 627224 + gT 86 -8 -4.72272 | overlap 627199 AGCTCCTTCAATGAT TCCTGGAATGTC AGC GATAATCCAGGG TTTTTGATACAAACG TERM 631 627199 - 627223 + gT 79 -9.3 -3.43042 | overlap 627198 GCTCCTTCAATGATT CCTGGAATGTC AGC GATAATCCAGG GTTTTTGATACAAAC TERM 632 627916 - 627885 - TR 91 -4.4 -5.95539 | CTTCAAACAAAAAAA GCTCAATTTGATGC CTGA GCAAAAAACCGAGC TTTTTTAATGTTTCT rpmA 628206 - 627952 - | 50S ribosomal protein L27 rplU 628554 - 628231 - | 50S ribosomal protein L21 ispF 628983 - 629513 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CpB0569 630553 - 629510 - | sulfite reductase [NADPH] flavoprotein alpha-component rpsJ 630891 - 630574 - | 30S ribosomal protein S10 CpB0571 632983 - 630899 - | elongation factor G TERM 633 631877 - 631896 + g 75 -8.6 -3.85698 | AAACTCATCTCTATC TGTACGCT CATT AGCGTGCA TTTCTAAAAGGCGAG TERM 634 632369 - 632386 + g 73 -2.7 -5.11112 | TGCACAACGCTCTTT GAGATCT TCAG AAATCTC TTTTTCTTCCCATTT CpB0572 633490 - 633017 - | 30S ribosomal protein S7 rpsL 633909 - 633538 - | 30S ribosomal protein S12 TERM 635 633758 - 633788 + g 91 -5.5 -5.67529 | gap 1, opp_overlap 633756 633767, overlap 633759 633767 CGCACCCAAGCAACT TTCCTTA-AAGCCG AGTT CGGCTTCTTAGGAG TTTTTGTTTTTACTT TERM 636 633814 - 633849 + g 70 -5.4 -4.57482 | TACTTGAAGGCAAAC TCCCCGCTTTTGTGGG CACT TCTGCAAAGCTGGGGA TTTCTTTCTAGCTAG CpB0575 633969 - 634145 + | hypothetical protein CpB0574 635069 - 634131 - | hypothetical protein CpB0576 635128 - 635466 + | hypothetical protein TERM 637 636181 - 636166 - g 80 -9 -3.94634 | opp_overlap 636166 636168 TATGAGGGTAAAGAA GAGCAG CTTG CTGCTC TGTGTCTACGTCAAA CpB0577 635629 - 637566 + | carboxy-terminal proteinase precursor CpB0578 638234 - 637644 - | sulfur-rich protein TERM 638 638180 - 638197 + g 86 -11.3 -3.40163 | opp_overlap 638178 638176, overlap 638180 TGTTTAGCACAGACT CAGGAGC AGCT GCTCCTG TTCCTGTTCCTCCTA TERM 639 638414 - 638448 + r 87 -10.1 -3.91984 | opp_overlap 638417, overlap 638417 GCTTATAAAACAAAA AAACCGCTTTAGTAC GTAAG GTACTAAAGCGGTAC TTCTTTGAAAGCTAT TERM 640 638417 - 638445 + r 100 -16.2 -3.02371 | opp_overlap 638417, overlap 638414 TATAAAACAAAAAAA CCGCTTTAGTAC GTAAG GTACTAAAGCGG TACTTCTTTGAAAGC TERM 641 638445 - 638417 - R 100 -16.2 -6.14618 | opp_overlap 638414 638417 TATAAAACAAAAAAA CCGCTTTAGTAC GTAAG GTACTAAAGCGG TACTTCTTTGAAAGC TERM 642 638502 - 638459 - R 100 -17.7 -3.53811 | opp_overlap 638460 638461 638463 638470, overlap 638460 638470 GGTACTTCTTTGAAA GCTATCCTAAAGCAGAGCG GAATAT CGCTCTGCTTTAGGATAAT TCCTTAGAATTTAAT TERM 643 638501 - 638460 - R 100 -21.2 -2.72144 | opp_overlap 638460 638461 638463 638470, overlap 638459 638470 GTACTTCTTTGAAAG CTATCCTAAAGCAGAGCG GAATAT CGCTCTGCTTTAGGATAA TTCCTTAGAATTTAA TERM 644 638460 - 638501 + r 100 -19.7 -3.3907 | opp_overlap 638460 638459 638470, overlap 638461 638463 638470 GTACTTCTTTGAAAG CTATCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGATAA TTCCTTAGAATTTAA TERM 645 638461 - 638500 + r 100 -23.2 -2.6296 | opp_overlap 638460 638459 638470, overlap 638460 638463 638470 TACTTCTTTGAAAGC TATCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGATA ATTCCTTAGAATTTA TERM 646 638463 - 638498 + r 100 -21.4 -2.84841 | opp_overlap 638460 638459 638470, overlap 638461 638460 638470 CTTCTTTGAAAGCTA TCCTAAAGCAGAGCGG AATA TCGCTCTGCTTTAGGA TAATTCCTTAGAATT TERM 647 638470 - 638491 + r 95 -12.3 -3.64162 | opp_overlap 638470 638460 638459, overlap 638463 638461 638460 GAAAGCTATCCTAAA GCAGAGCGG AATA TCGCTCTGC TTTAGGATAATTCCT TERM 648 638491 - 638470 - R 90 -11.6 -3.62864 | opp_overlap 638463 638461 638460 638470, overlap 638460 638459 GAAAGCTATCCTAAA GCAGAGCG GAATAT CGCTCTGC TTTAGGATAATTCCT CpB0579 640183 - 638513 - | 60K cysteine-rich outer membrane protein precursor TERM 649 640314 - 640282 - R 75 -8.5 -3.36289 | opp_overlap 640279 TATTATCTGAATTAA GGTAGTCAGGAATTA ATT CATCTCCTAACTACC TGATCAATTTAAGTA CpB0580 640622 - 640350 - | 9K cysteine-rich outer membrane protein CpB0581 641064 - 641252 + | hypothetical protein gltX 642934 - 641417 - | glutamyl-tRNA synthetase TERM 650 641482 - 641507 + g 73 -5.6 -4.42386 | gap 1 CCACAGTTGCAGCGA GCTTCTTAGGA ACGCC TCCTAA-AAGC TTTTCTGCATACACA TERM 651 642785 - 642816 + g 75 -7.4 -4.36595 | gap 1, overlap 642788 642808 ATCTTGGCGACTACG TGTTCTATCCGTATC TTC GATACGGA-GGATCA TTTTCCCTTTAAATC TERM 652 643070 - 643035 - R 100 -15.1 -5.29885 | opp_overlap 643039 AATCCAAAAATAAAA GAAACTCCTTAATTT AATAAA AAATTAAGGAGTTTC TCAAAAAAATCACGA TERM 653 643039 - 643066 + r 83 -10.1 -3.86015 | opp_overlap 643035 CAAAAATAAAAGAAA CTCCTTAATTT AATAAA AAATTAAGGAG TTTCTCAAAAAAATC CpB0583 643726 - 643190 - | early upstream orf EUO TERM 654 643357 - 643377 + g 86 -11.9 -3.09635 | CTCCCTTACGCTCTC CTCGTATGG TTC CCGTACGAG TTGCATAGTAGACCT TERM 655 644206 - 644237 + r 76 -9.7 -2.83449 | opp_overlap 644210, overlap 644202 644210 TGCGATGAACCTTAG GAAACTCATTTTT GGTTTA AAAGATGAGTTTC TAATTATCGAAATGT CpB0584 645358 - 644237 - | hypothetical protein recJ 647378 - 645612 - | ssDNA-specific exonuclease TERM 656 646508 - 646522 + g 81 -4.2 -5.31275 | overlap 646507 646509 TCAAGACAATATCTG TCGAAG TGA CTTCGC TTTTTTCTACTCCAC TERM 657 646509 - 646521 + g 72 -7.7 -3.78042 | overlap 646507 646508 CAAGACAATATCTGT CGAAG TGA CTTCG CTTTTTTCTACTCCA TERM 658 647395 - 647424 + r 77 -4.9 -5.1244 | opp_overlap 647389 647382 647394 647413, overlap 647396 647397 AATTTAATACCACAG GGGCCTTTGGGAC TAAA GTCCCAAAGGAGA TTTTTATATTGCTAC TERM 659 647396 - 647423 + r 73 -8.4 -3.6638 | opp_overlap 647389 647382 647394 647413, overlap 647395 647397 ATTTAATACCACAGG GGCCTTTGGGAC TAAA GTCCCAAAGGAG ATTTTTATATTGCTA TERM 660 647397 - 647422 + r 84 -11.9 -2.78743 | opp_overlap 647389 647382 647394 647413, overlap 647396 647395 TTTAATACCACAGGG GCCTTTGGGAC TAAA GTCCCAAAGGA GATTTTTATATTGCT CpB0586 651672 - 647464 - | bifunctional preprotein translocase subunit SecD/SecF TERM 661 648987 - 648971 - G 70 -9.5 -2.73875 | opp_overlap 648974, overlap 648974 TTTTTCCCAAGATCA GAAGAGA TCG TCTCTTC ACTGAGAACCTCGGG TERM 662 649040 - 649014 - G 80 -10.2 -3.55261 | opp_overlap 649014 649013, overlap 649012 649010 CGGGAACAAAAGACA TCGCTCCAGATT TTA AATCTGAGGCGA GTTTGCTCACTTCAC TERM 663 649014 - 649040 + g 75 -10.2 -2.87319 | opp_overlap 649012 649010 649014, overlap 649013 CGGGAACAAAAGACA TCGCTCCAGATT TTA AATCTGAGGCGA GTTTGCTCACTTCAC TERM 664 650662 - 650674 + g 81 -4.1 -5.26119 | opp_overlap 650673 TACTTGAACAGTTAA GTTCT TAG AGAGC TTTTGTTTTTCAACA TERM 665 650830 - 650815 - G 76 -2.6 -5.28481 | TATGGAACTAAAAAA TAATGA GGAC TCACTA CAATCTAATCGAAGC TERM 666 651059 - 651045 - G 80 -2.8 -5.4505 | GTCGCGAAGAAAAAA CCTCAA ATC CTGAAG AAAGGTTCTTGGCAT TERM 667 651742 - 651732 - R 93 -5.4 -6.09133 | overlap 651740 CAGTTGAAAAAAAAA TCGT CAA ACGA AGAGGAGCCCTCCAC CpB0587 652952 - 651852 - | hypothetical protein TERM 668 652553 - 652585 + g 79 -3.3 -5.40474 | overlap 652555 652558 AGATCTCTACTTGGG GACAGCCTGGATGAT AGT AGCATCCGGGTCGTA TTTTTTTCCAAGACT TERM 669 652555 - 652583 + g 70 -5.9 -4.34482 | overlap 652553 652558 ATCTCTACTTGGGGA CAGCCTGGATGAT AGT AGCATCCGGGTCG TATTTTTTTCCAAGA TERM 670 653061 - 653050 - H 82 -3 -5.59502 | opp_overlap 653050 653058, overlap 653058 CAAAAAATTAAAAAA CAAA AGAG TTTG TTTCAAAATTTTCAT TERM 671 653714 - 653699 - g 77 -6.2 -4.66537 | GTTTTCAACAGAAAA TTTTGG GAGA CCAAAA GAGGAAATTCAAGAA CpB0588 653463 - 654215 + | hypothetical protein CpB0589 654216 - 655142 + | phosphatidate cytidylyltransferase cmk 655139 - 655789 + | cytidylate kinase CpB0591 655786 - 656424 + | glycerol-3-phosphate acyltransferase TERM 672 656604 - 656594 - g 75 -2.4 -5.40072 | opp_overlap 656594 CGTGTTTTAAAAAAA GCTC CGA GGGC TATTGCTGAGGCCAT TERM 673 657070 - 657047 - g 71 -2.4 -5.09173 | gap 1, overlap 657035 657048 GAAGAGTTTAAAAAA CGCTCCCAACA GAA TGT-GGTAGCA TTACAGGCTAAGGAT argS 656429 - 658114 + | arginyl-tRNA synthetase CpB0592 659444 - 658068 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 674 658406 - 658394 - G 91 -7.7 -4.75372 | AGCACTGATGAAAAA GCTGA CAC TCAGC TCCCATGTGCTGAAG TERM 675 660408 - 660381 - g 71 -2 -5.10516 | overlap 660383 660386 AAAAACCAAAGAAAA TATTACTAAGCC TGCG GACTTAGAAATG TGCATCGCTAAATTC CpB0594 659674 - 661941 + | hypothetical protein CpB0595 662726 - 662010 - | hypothetical protein CpB0596 663267 - 662713 - | hypothetical protein bltD 663816 - 663301 - | spermine/spermidine acetyltransferase prfB 664574 - 663813 - | peptide chain release factor 2 TERM 676 664628 - 664614 - H 78 -7.2 -4.36914 | opp_overlap 664603 TTTCTTCTCACAAAA GAGAAA TTC TTTCTC TAAGTCTTCACAAAT CpB0599 664821 - 665000 + | hypothetical protein TERM 677 665030 - 665054 + TF 72 -5.8 -4.31697 | overlap 665028 AAACAAAAACCAAGA CTTTTTCTTC TTTTT GGAGAGAAAG TTCTTTGTTATATCT CpB0600 665217 - 665062 - | histone H3 TERM 678 665199 - 665165 - Gf 80 -2.8 -5.4251 | opp_overlap 665165, overlap 665167 CTGAGAGATAAAAAA GTTGGGATGAAGAG CTCAGGT CTCTTCTTACCACC TTTACTAGGAGTCAC TERM 679 665247 - 665231 - gH 87 -4.5 -5.49729 | AATGAGTCAAAAAAA TAAAAAC TCT GCTTTTA TGCATCCCGTGAATA CpB0601 665217 - 665480 + | hypothetical protein TERM 680 665564 - 665545 - fH 78 -10.6 -2.74563 | CTGATATGTTAAGTA CCCTGCCC TTTA GGGCGGGG ATATAAAGTGATCTT TERM 681 665857 - 665842 - g 82 -4.7 -5.40474 | opp_overlap 665844 AGGCTTCCAAAAAAA CATGC GCATTT GCATG GTCTTCGCATCGCTC TERM 682 666157 - 666143 - g 71 -2.1 -5.14563 | TCCCTGAGGAAAAAA GTCGT CCTAT ACAAC GCGCCATCATTGCTG yaeI 665728 - 666690 + | putative phosphoesterase TERM 683 667198 - 667187 - g 78 -2.2 -5.45802 | CTTGCAAAAGAAAAA CAGC TCAC ACTG GTAGACGACATCGAA ispD 666683 - 667318 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 684 667690 - 667700 + GT 74 -6.8 -4.27117 | GCCAAACCTCTTCCC TGGC AGC GCCA TTTCTGTTATACCCC CpB0604 668756 - 668064 - | putative phosphoglycolate phosphatase truA 667315 - 668118 + | tRNA pseudouridine synthase A CpB0606 668825 - 669502 + | hypothetical protein CpB0607 669740 - 670042 + | hypothetical protein TERM 685 670376 - 670362 - g 81 -4.2 -5.33026 | GAATCTAAAGAAAAA GAAGTG GAA CTCTTC ATCCGTAAAAACGAG atoS 670029 - 671123 + | AtoS TERM 686 671168 - 671178 + T 77 -5.4 -4.84492 | opp_overlap 671168 AGGGTTCTCAAAGAT CATC TAC GATG TTTTCTTATCCTTGA CpB0609 673028 - 671184 - | hypothetical protein TERM 687 673870 - 673887 + G 81 -5.5 -5.24129 | opp_overlap 673876 GGAGAATCGGGATGC GGAAAGG AAGT CCTCTCC TTTTTTATCCACCAC atoC 673324 - 674508 + | acetate metabolism regulatory protein TERM 688 674510 - 674521 + F 79 -3.6 -5.51353 | TCGCTTTAGCTTGAT CTCC TCTA GGGG TTTTTCTTGTTTTTC TERM 689 675295 - 675275 - gf 71 -3.4 -5.07486 | gap 1, opp_overlap 675280, overlap 675280 GATCTCCAAGAAAAA GATGAGCAT TCGT ATGCT-ATC TCAAGACGAGGCTAT CpB0611 674763 - 675449 + | hypothetical protein TERM 690 675515 - 675492 - gf 93 -10.4 -3.9712 | gap 1, opp_overlap 675480 CGATCCCATTAGAAA TCGGGAGTTAG TTT CTA-CTCCCGA AGAAAAAGTCCGCCA CpB0612 675394 - 675951 + | hypothetical protein recO 675962 - 676720 + | DNA repair protein RecO TERM 691 676773 - 676794 + T 72 -5.9 -4.28361 | opp_overlap 676777 AAGGTACCGCTGCAC CAAACCTTT GAAA AAAGGTGTG TTTTCCTAGAATTCA CpB0614 677434 - 676835 - | hypothetical protein TERM 692 678171 - 678155 - g 71 -3 -5.01811 | overlap 678148 CTACTAAAGGAAAAA TTTCCA TGTCT CGGAAA GCCATCGCAAAAAAG CpB0615 677695 - 678345 + | hypothetical protein CpB0616 679798 - 678710 - | hypothetical protein hlyA 678475 - 678786 + | alpha-hemolysin TERM 693 680333 - 680317 - g 77 -10.9 -2.84732 | overlap 680319 TCCAAATTCAGGAGA GAGCTCT TTT AGAGCTC CCAGAAGCCACCCCT TERM 694 681492 - 681477 - g 90 -4 -5.64321 | ACAAGAAAAGAAAAA GAAGAA ATCT CTCTTC AGGGCTCCAAACATA pheT 679905 - 682283 + | phenylalanyl-tRNA synthetase subunit beta TERM 695 682739 - 682753 + G 73 -8.6 -3.73224 | opp_overlap 682739 GGGCATGTCATAGAA GGAAGT TAT ACTTCC TTTAATGGGAAATAC TERM 696 682753 - 682739 - g 71 -8.6 -3.50393 | opp_overlap 682739 GGGCATGTCATAGAA GGAAGT TAT ACTTCC TTTAATGGGAAATAC CpB0619 682280 - 683251 + | hypothetical protein CpB0620 683261 - 683782 + | methylated-DNA-protein-cysteine S-methyltransferase CpB0621 685537 - 683798 - | oligopeptide ABC transporter permease protein TERM 697 684876 - 684893 + g 71 -4.1 -4.84527 | overlap 684862 CTTTGCTGTAATCTT TTAAGGC AAAT GCCTTCA TTTTTCATCTCTAAG dppB 687019 - 685538 - | dipeptide transport system permease protein CpB0623 689109 - 687001 - | oligopeptide ABC transporter TERM 698 688903 - 688886 - G 72 -6.3 -4.38774 | gap 1 AAGAGTAGAGCAAAA GCTTCGTC TCT GACGA-GC TTAGGAGCGAGCATC CpB0624 689469 - 689146 - | hypothetical protein TERM 699 689646 - 689678 + r 78 -7.9 -4.09685 | gap 1, opp_overlap 689646 689654, overlap 689654 CTCATGGGGGAAAAA GACAAAT-AGAGGG CTTTCA CCCTCTTGTTTGTC TTTTAAAAACTAAAA TERM 700 689678 - 689646 - R 76 -6.4 -4.58395 | gap 1, opp_overlap 689646 689654, overlap 689654 CTCATGGGGGAAAAA GACAAA-TAGAGGGC TTTC ACCCTCTTGTTTGTC TTTTAAAAACTAAAA TERM 701 689654 - 689669 + r 72 -6.1 -4.32763 | opp_overlap 689654 689646, overlap 689646 GGAAAAAGACAAATA GAGGG CTTTCA CCCTC TTGTTTGTCTTTTAA CpB0625 690229 - 689783 - | hypothetical protein TERM 702 689844 - 689834 - G 71 -6.8 -4.18494 | overlap 689840 GATTCGTATCCAAAA GCAG AAC CTGC AACAGGAAGCACAAG CpB0626 691427 - 690423 - | hypothetical protein TERM 703 690464 - 690481 + g 100 -4.2 -6.08563 | ATTTAATAAGTTTTT GAGATT TTTTAT AATCTC TTTTTTTTATCTCTT TERM 704 690957 - 690944 - G 75 -5.3 -4.76644 | AACATTCACGAAAAA GAAAG TAAT CTTTC CAAAAACAAAAACAA TERM 705 691191 - 691171 - G 87 -4.7 -5.42862 | overlap 691174 691175 AGATCCTCAAAAAAA TCACCTTTC CCC GAAAGAAGA TAGAGCCGTGTGACA TERM 706 691531 - 691521 - H 71 -5.4 -4.49556 | TTTTTAGCAAAGAAA GTCA CCG TGAC AACTCCAGCCTATCT hemH 691527 - 692510 + | ferrochelatase CpB0628 693267 - 692515 - | glutamine-binding periplasmic protein precursor TERM 707 693169 - 693179 + g 73 -5.4 -4.72272 | GGCATCACGACCTAC GAGA ACT TCTC TTTTTACTCGAGAGC CpB0629 694029 - 693469 - | putative methylase CpB0630 694793 - 694026 - | hypothetical protein TERM 708 694623 - 694609 - G 73 -8.6 -3.69469 | overlap 694607 ATAGCCCAAGAAATA TCTCCT GGG AGGAGA ACAATATCCTCTGGA CpB0631 696217 - 694892 - | glucose-1-phosphate adenylyltransferase TERM 709 696017 - 696007 - G 73 -2.6 -5.20333 | overlap 696001 GACCTATAACAAAAA TTTT TGA AAAA CCTGCACTAATTGCA TERM 710 696182 - 696171 - G 71 -4.4 -4.84359 | overlap 696172 696174 696176 TTATCTCGATAAAAA TGAG AGCT CTCA AAATTTGAGGCCTCC TERM 711 696326 - 696354 + r 80 -9.1 -3.61219 | opp_overlap 696325 696324 TTTTTAATAAATAGG TTCTAGAAATTAA GAT TCAATTTCTAGAA TTTCGGAAATTTTGT CpB0632 696967 - 696335 - | UMP synthase CpB0633 697027 - 697311 + | hypothetical protein rho 698742 - 697348 - | transcription termination factor Rho coaE 699356 - 698739 - | dephospho-CoA kinase CpB0636 701953 - 699341 - | DNA polymerase I TERM 712 701445 - 701431 - G 71 -10 -2.70994 | overlap 701430 701433 CTAACGCTAGATAAT CAGGGA TAT TCCCTG GAGGAATCCCATAAC CpB0637 702969 - 701977 - | proteinase IV CpB0638 704724 - 703102 - | plastidic ATP/ADP-transporter TERM 713 704463 - 704445 - G 100 -13.2 -5.5604 | TGAAGCAATAAAAAA CGGTATCC CGA GGATACCG ACTGCCTAACCACCC CpB0639 705459 - 704953 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CpB0640 705978 - 705823 - | hypothetical protein dnaB 706056 - 707462 + | replicative DNA helicase CpB0642 707749 - 707591 - | hypothetical protein TERM 714 707636 - 707619 - G 78 -7.1 -4.56597 | GTTCCGCCGGAAAAA TTCAAAC TTCG GTTTGAA TATGAAGAATCTTCG TERM 715 707667 - 707646 - G 70 -7.3 -3.82084 | opp_overlap 707639, overlap 707647 TTTGAATATGAAGAA TCTTCGTCA CTTA TGACGAAGG GGATGTCAAATCGAT TERM 716 707666 - 707647 - G 77 -10.8 -2.88768 | opp_overlap 707639, overlap 707646 TTGAATATGAAGAAT CTTCGTCA CTTA TGACGAAG GGGATGTCAAATCGA gidA 707806 - 709641 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CpB0644 709628 - 710335 + | lipoate--protein ligase A ndk 710766 - 710332 - | nucleoside diphosphate kinase ruvA 711461 - 710838 - | Holliday junction DNA helicase motor protein ruvC 711969 - 711463 - | Holliday junction resolvase CpB0648 713074 - 712112 - | hypothetical protein TERM 717 713470 - 713435 - R 82 -8.5 -4.05875 | opp_overlap 713435 TTCAAAAAAGGGAAA GGTATGCCTTAAGTT AAAGTG AACTTAAACCATACC TTTAAAAATAGCTAT TERM 718 713487 - 713507 + r 73 -8.3 -3.53012 | overlap 713489 TTAAAAATAGCTATT CTTCTTCTG TAG CAGAAGATG TTTCGGGGAAGAACA TERM 719 713489 - 713505 + r 79 -9.5 -3.34398 | overlap 713487 AAAAATAGCTATTCT TCTTCTG TAG CAGAAGA TGTTTCGGGGAAGAA CpB0649 714315 - 713482 - | hypothetical protein CpB0650 715337 - 714330 - | glyceraldehyde-3-phosphate dehydrogenase TERM 720 715010 - 715031 + g 95 -5.9 -5.60993 | opp_overlap 715015 GTTTCGCTCCAGCTT GAATATGCT TCTC AGCATCTTC TTTTTTTGTGAACAA rplQ 715807 - 715379 - | 50S ribosomal protein L17 CpB0652 716938 - 715814 - | DNA-directed RNA polymerase subunit alpha TERM 721 715950 - 715960 + g 70 -5.4 -4.42464 | AATTTATTCTTGATC TCAC ACA GTGA TTTCTTTCCAAAATT CpB0653 717360 - 716959 - | 30S ribosomal protein S11 rpsM 717750 - 717382 - | 30S ribosomal protein S13 secY 719179 - 717806 - | preprotein translocase subunit SecY rplO 719638 - 719204 - | 50S ribosomal protein L15 rpsE 720128 - 719631 - | 30S ribosomal protein S5 rplR 720517 - 720146 - | 50S ribosomal protein L18 rplF 721079 - 720528 - | 50S ribosomal protein L6 rpsH 721507 - 721106 - | 30S ribosomal protein S8 TERM 722 721337 - 721319 - G 73 -5.2 -4.66953 | opp_overlap 721321 721323, overlap 721321 GGAATATTGTAAAAA CACACGCA TAG CGCGTTTG CGGTTTTCTTCCTTT rplE 722067 - 721525 - | 50S ribosomal protein L5 TERM 723 721736 - 721720 - G 73 -5.8 -4.46212 | overlap 721722 TCCTTTATTAGAAAA TCCGCG GAAGT CGCGAA TCCGTGGAGAAACAA rplX 722404 - 722069 - | 50S ribosomal protein L24 rplN 722786 - 722418 - | 50S ribosomal protein L14 rpsQ 723069 - 722809 - | 30S ribosomal protein S17 rpmC 723280 - 723062 - | 50S ribosomal protein L29 rplP 723699 - 723283 - | 50S ribosomal protein L16 rpsC 724399 - 723728 - | 30S ribosomal protein S3 TERM 724 724120 - 724132 + g 74 -7.7 -3.9122 | CTTCTTTTCCGGTAA GAGCT CTG AGCTC TTCTTTAAGCAGATC TERM 725 724248 - 724261 + g 85 -2.4 -5.7946 | ACAAATCCAGCGGCA CCTT GACATG AAGG TTTTTTTCTTAAAAA rplV 724750 - 724415 - | 50S ribosomal protein L22 rpsS 725035 - 724769 - | 30S ribosomal protein S19 rplB 725895 - 725041 - | 50S ribosomal protein L2 rplW 726252 - 725917 - | 50S ribosomal protein L23 rplD 726943 - 726269 - | 50S ribosomal protein L4 TERM 726 726735 - 726751 + g 86 -3 -5.626 | CGGGCATTACCCGTA CCTTTT TGTTT GAAAGG TTTTTTTGTAGAATG rplC 727635 - 726976 - | 50S ribosomal protein L3 TERM 727 727744 - 727734 - R 82 -5.4 -5.26119 | overlap 727729 727739 TCTCTAAAAAGAAAA GGAA ATT TTCC CTTAAGAAAATAAAG TERM 728 727897 - 727868 - R 100 -14.5 -4.43283 | opp_overlap 727868, overlap 727883 TTATAGAAATAGAAA GTCGCTTCCAAAA AATT TTTTAGAAGCGAC TTCTTTAAAATAAAG TERM 729 727868 - 727897 + r 100 -12.3 -3.9392 | opp_overlap 727868 727883 TTATAGAAATAGAAA GTCGCTTCCAAAA AATT TTTTAGAAGCGAC TTCTTTAAAATAAAG CpB0674 728925 - 727924 - | hypothetical protein TERM 730 728488 - 728498 + g 82 -2.4 -5.59962 | opp_overlap 728488 TAGCATTTTACTATA CTCC CCA GGCG TTTTTCTTTCTTTTG TERM 731 728616 - 728630 + g 71 -5 -4.62336 | opp_overlap 728616 CATTAGCTAAGGCAA CAACTT CTC GAGTTG TTTTTAACATACCCT fmt 729994 - 729029 - | methionyl-tRNA formyltransferase CpB0676 730823 - 729984 - | UDP-N-acetylglucosamine acyltransferase fabZ 731297 - 730836 - | (3R)-hydroxymyristoyl-ACP dehydratase lpxC 732157 - 731309 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 732 731838 - 731850 + g 78 -9.1 -3.83998 | ACATTTGAGCTTCCA TCCCC TAT GGGGA TTTCCTCTCCACTAC lnt 733812 - 732187 - | apolipoprotein N-acyltransferase TERM 733 732540 - 732558 + g 72 -9.6 -3.18832 | opp_overlap 732540 732543, overlap 732538 732543 CATTTGTTAAGTTAA CAAGGAGT TCG GCTCCTTG TCTCTTGTAGGATTG TERM 734 732777 - 732759 - G 71 -8.9 -3.37796 | opp_overlap 732767 CGCCACCAGGCACAA GGATACG CTTAT CGTATCC TACGGAAATTCCTTT TERM 735 733632 - 733607 - G 73 -2.5 -5.11063 | AGCATCCAAGAAAAA TGAATCCCCTC TATT GTGAAGATCCA GAAAAAACAGGATAC CpB0680 734289 - 733822 - | cytosolic acyl coenzyme A thioester hydrolase TERM 736 734350 - 734376 + r 93 -14 -2.57092 | opp_overlap 734355, overlap 734355 ATAGTATCGGTCAAC TGAAAGAAAATC TAT GATTTTCTTTCA TAAGTTACTGAAATT TERM 737 734355 - 734371 + r 75 -8.1 -3.80114 | opp_overlap 734355, overlap 734350 ATCGGTCAACTGAAA GAAAATC TAT GATTTTC TTTCATAAGTTACTG TERM 738 734371 - 734355 - R 75 -8.1 -3.75332 | opp_overlap 734355 734350 ATCGGTCAACTGAAA GAAAATC TAT GATTTTC TTTCATAAGTTACTG CpB0681 735169 - 734420 - | DNA polymerase III subunit epsilon TERM 739 735204 - 735223 + G 75 -7.2 -4.28488 | overlap 735200 TATCTTTGTTTGATA TCCTTCTG ACTG TAGAAGGA TTTCTGTGTTTAACT CpB0682 735194 - 735373 + | hypothetical protein CpB0683 735705 - 735370 - | hypothetical protein CpB0684 736490 - 735774 - | hypothetical protein TERM 740 736232 - 736242 + g 70 -5.4 -4.57516 | opp_overlap 736230 736232 ATGGGCAAATATAGA TACG CTT CGTA TTTTCGTTTACCTGT CpB0685 736855 - 737163 + | thioredoxin TERM 741 737184 - 737210 + T 71 -5.2 -4.4715 | opp_overlap 737184 CGCTGCAATATTAAA CCGTAGGATT CTTTTGC AATGCTACGG TTTTCTGCCTTACCA CpB0686 737649 - 737179 - | putative rRNA methylase TERM 742 737281 - 737302 + g 70 -2.9 -5.02201 | AGAACGGATGTCTTG TTGCATGGG AATG CGCAGGCAA TTTTTATAATATTTT TERM 743 737583 - 737545 - G 100 -14.7 -4.87133 | gap 2 ATCGGCTAAAGAAAA GCCCAAGG-GCCGAAC-CA AAA TGAGTTCGGCGCCTAGGGC TACACAAGTTCTACC CpB0687 738422 - 737646 - | MIP protein TERM 744 738061 - 738071 + g 74 -4 -4.99665 | AATTTTTCTGCCAAT GAAA GAT TTTC TTTTGATTTTTTTTC aspS 740245 - 738491 - | aspartyl-tRNA synthetase TERM 745 738604 - 738590 - GR 70 -7.1 -3.72576 | CTGTGTTTTAGGAAA CGCGA TGACC TCGCG AATGCTCTCTGCTGC hisS 741512 - 740220 - | histidyl-tRNA synthetase TERM 746 741498 - 741488 - GR 73 -8.2 -3.56811 | overlap 741482 GAAATATATCAAAGA CCCC TTT GGGG AGAGTTACAGTCACG CpB0690 742079 - 741876 - | hypothetical protein TERM 747 742422 - 742401 - g 91 -6.7 -5.4505 | opp_overlap 742401 GTGGTCAAGAAAAAA TACAAATAC TGGC GTATTCGTA TTTTCTATAGCATGT TERM 748 743011 - 742994 - g 80 -9.9 -3.60094 | TATAGAGAAGTACAA GCGTGAT CCCC ATCACGC ACATCACGAGGGCAA uhpC 742323 - 743690 + | hexose phosphate transport system regulatory protein TERM 749 747129 - 747113 - g 73 -3.7 -5.03715 | ATCAGGTGCAAAAAA TGTCATT TAC AATGTCA ACCTCTGGCAAAGAA dnaE 743710 - 747432 + | DNA polymerase III subunit alpha CpB0693 748380 - 747496 - | hypothetical protein TERM 750 749387 - 749377 - g 82 -2.4 -5.68489 | GAGAAGAAGAAAAAA GCCG AGG CTGC GAATATCTATTACCG CpB0694 748531 - 749487 + | hypothetical protein CpB0695 749501 - 750100 + | hypothetical protein CpB0696 750069 - 750521 + | putative sigma regulatory factor-histidine kinase CpB0697 750952 - 750524 - | hypothetical protein TERM 751 752131 - 752164 + G 84 -5.3 -5.252 | CATGCGGACGCCTTC CCTATTGAACAAGGA GATC TTCTTGGTCATTGGG TTTTTTATGACGATG dacB 751063 - 752373 + | serine-type D-Ala-D-Ala carboxypeptidase CpB0699 752445 - 752624 + | hypothetical protein CpB0700 752609 - 752788 + | hypothetical protein TERM 752 752874 - 752889 + T 83 -10.4 -3.22076 | opp_overlap 752871 752868, overlap 752873 752871 CTTTTGAAAGATTCG GGCGCT CTAC AGCGCC TCTATTCTAGATTTT TERM 753 752890 - 752900 + T 73 -4 -5.03314 | opp_overlap 752871 752868, overlap 752873 752871 GCGCTCTACAGCGCC TCTA TTC TAGA TTTTTTGAAAATGAG CpB0701 753990 - 752896 - | fmu methyltransferase TERM 754 752928 - 752957 + g 74 -4.2 -4.98522 | opp_overlap 752928 GAGAAGTAAAAAATG CGTCGCCCTTAC CTACTT GTAAGGGAAGCG TTTTTCTGTGGACTT TERM 755 753522 - 753558 + g 100 -13.9 -3.90922 | opp_overlap 753519 ATGCCTCAGGAAGCT CTCCAGGAGAACTTGGA TAT TCTAACTTCTCTTGGAG TTCTTTGACGGAGAT CpB0702 755241 - 754087 - | hypothetical protein TERM 756 754232 - 754246 + g 70 -5.6 -4.35116 | ATGGTAATCATTTTA TCCCAC AGG GCGGGA TTTTGGTCTCGAATA TERM 757 754555 - 754545 - G 100 -6.8 -5.65927 | opp_overlap 754554 CACTCAAAGAAAAAA GCTG GAT CAGC TCGCGTAACAATACG CpB0703 756539 - 755370 - | hypothetical protein TERM 758 756110 - 756096 - G 86 -5.7 -5.35815 | TACATGAAAGAAAAA GCTTC GGCAT GAAGC TAGTGCTGTTTCTAA CpB0704 757723 - 756575 - | hypothetical protein TERM 759 757362 - 757378 + g 75 -8.7 -3.6215 | GACCCCGCCGTAGGA GGTTGAG GTG CTCGACC TTTCCCATGCGTTGC CpB0705 758525 - 758001 - | hypothetical protein TERM 760 758794 - 758771 - R 83 -4.7 -5.47159 | TTCTAAGAGAAAAAA GACGTTTTT ATAATA AAAAACATC TAAAGTTCAGGGAGT TERM 761 758809 - 758837 + r 86 -10.3 -3.55444 | CTAAAGTTCAGGGAG TTATCTCCAGAGG AGT CCTCTGGTGAAAA TTTGAAAAATCGGAA pgk 760252 - 759044 - | phosphoglycerate kinase CpB0707 761570 - 760290 - | phosphate permease TERM 762 760836 - 760847 + g 82 -2.2 -5.60864 | TTCTTTCAAACGATA GGTA AGAC TGCC TTTTTTTGGTGTATC CpB0708 762251 - 761577 - | hypothetical protein CpB0709 762306 - 763280 + | dipeptide ABC transporter, ATP-binding protein TERM 763 763625 - 763613 - g 77 -6.3 -4.60924 | opp_overlap 763613, overlap 763617 TAAACCCGCGAAAAA CTATC CTA GATAG TTTAGGCCACTCTCT TERM 764 764183 - 764173 - g 75 -5.4 -4.82901 | CGTTGTCCACAAAAA CAAG AAG CTTG CAAGTCAGAGATCAT dppF 763270 - 764244 + | dipeptide transport protein TERM 765 764407 - 764384 - g 100 -14 -5.2894 | opp_overlap 764384 764381 AAATACAAAACAAAA GCCATTCCAT ATCC ATGGAATGGC TACTTTAAGACCTAA TERM 766 764384 - 764407 + G 100 -14 -2.91144 | opp_overlap 764384, overlap 764381 AAATACAAAACAAAA GCCATTCCAT ATCC ATGGAATGGC TACTTTAAGACCTAA CpB0712 764316 - 764519 + | hypothetical protein spoOJ 765360 - 764500 - | Soj antagonist CpB0713 765683 - 765495 - | hypothetical protein TERM 767 766141 - 766152 + G 78 -5.8 -4.7629 | opp_overlap 766140 766141 GGAGAATCCATGAAG CCCT ATGC AGGG TTTTTAGCTTCGTGC CpB0714 765886 - 766539 + | hypothetical protein CpB0715 766848 - 767462 + | hypothetical protein TERM 768 767512 - 767483 - T 87 -6.5 -5.42259 | gap 1, opp_overlap 767491 767495, overlap 767491 CCACGTCCAAAAAAA TAGAAGATCCCATC GCA GACGGG-TCATCTA CGAATCTTATCTAAA CpB0716 768726 - 767506 - | putative NifS-related protein TERM 769 768003 - 768015 + g 84 -6.3 -5.07567 | CTACTGGAGGCAACT GATCT AAT AGATC TTTTTTCCCATATAA CpB0717 770020 - 768755 - | putative ABC transporter membrane protein CpB0718 770774 - 770004 - | ABC transporter ATPase CpB0719 772234 - 770780 - | cysteine desulfurase activator complex subunit SufB TERM 770 771632 - 771605 - G 73 -8.6 -3.70019 | gap 1, opp_overlap 771605, overlap 771603 771613 ATTAATCCGAAAATA GGTAGAAATATCC ATA GGACATTTC-ACC CCTTTAGGAACATAA TERM 771 772202 - 772182 - G 74 -6.1 -4.44245 | opp_overlap 772182 772183, overlap 772183 ATAGGAGTCACAAAA CCGTAAGGA TAG TCCTCACGC TCTTCTAAAAAAACC TERM 772 772201 - 772183 - G 74 -9.6 -3.25824 | opp_overlap 772182 772183, overlap 772182 TAGGAGTCACAAAAC CGTAAGGA TAG TCCTCACG CTCTTCTAAAAAAAC TERM 773 772369 - 772338 - R 93 -9.5 -4.29119 | CAGTATAACAAAGAA GGCTTGAAAGACG AACCTA CCCCTTTCAAGCC CAGAAGAAAAGAGAA CpB0720 773578 - 772559 - | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase CpB0721 776921 - 773649 - | penicillin-binding protein 2 TERM 774 774474 - 774462 - G 70 -2.6 -5.03314 | GCCATCTTTAAAAAA GCCC ACGTG AGGC TTAGAACTCCTATAG TERM 775 774964 - 774979 + g 77 -6.2 -4.7033 | opp_overlap 774964 AGAAATGTATCCAAA TGTTCT TGGC AGAACA TTTTATATTGCCTTG TERM 776 775899 - 775863 - G 77 -10.9 -2.83788 | opp_overlap 775864 775892, overlap 775862 ATCTAACGCAATAAT GGCTCCTCCTTTAATCC AAG GGAACAAAGGAGGAAGC TTCTCTCGTTTCTTC TERM 777 775864 - 775899 + g 80 -9.8 -3.68504 | gap 1, opp_overlap 775863 775862, overlap 775892 TCTAACGCAATAATG GCT-CCTCCTTTAATCC AAG GGAACAAAGGAGGAAGC TTCTCTCGTTTCTTC TERM 778 776507 - 776540 + g 77 -10.5 -3.16564 | gap 1, opp_overlap 776507, overlap 776499 AAGCTTTTGCATGAA TTGCATCTTCGATCGC CTC GCGATCTAA-ATGCAA TTCCTGAGATAAAAG TERM 779 776540 - 776507 - G 77 -10.5 -3.14463 | gap 1, opp_overlap 776499 776507 AAGCTTTTGCATGAA TTGCATCTTCGATCGC CTC GCGATCTAA-ATGCAA TTCCTGAGATAAAAG TERM 780 777179 - 777166 - H 95 -3.9 -6.32017 | overlap 777167 AATAAACAAAAAAAA TTTCT CAAG AGAAA AAGACTTGAGAAGGT TERM 781 777275 - 777257 - H 93 -7.5 -5.48787 | overlap 777248 AGAATATACAAAAAA GCTATAG CTTTC CTATAGC TCATAACAGAAGTTC TERM 782 777592 - 777622 + G 74 -10.4 -2.64218 | overlap 777591 TTTGCTGGTTCTGTC GGCTCCTTACAAGC CTT GCCTGTAGGGAACC CTTCTGATCCAAGCT CpB0722 777538 - 778707 + | major outer membrane protein TERM 783 778740 - 778764 + F 85 -9.4 -3.96327 | overlap 778758 CTCCTCACCTTGTTA TCAGAGTCTA CATGT TAGGCTCTGA TTTATGCTCAGAGCT TERM 784 778758 - 778778 + F 73 -6.9 -3.93401 | overlap 778740 778768 778769 GAGTCTACATGTTAG GCTCTGA TTTATGC TCAGAGC TTCTTAATTTCTGAG TERM 785 778768 - 778796 + F 79 -5.3 -5.06414 | overlap 778758 778769 GTTAGGCTCTGATTT ATGCTCAGAGCTT CTT AATTTCTGAGCAA TTTTTATTCCCCCCC TERM 786 778769 - 778795 + F 77 -8.8 -3.63367 | overlap 778758 778768 TTAGGCTCTGATTTA TGCTCAGAGCTT CTT AATTTCTGAGCA ATTTTTATTCCCCCC rpsB 779091 - 779924 + | 30S ribosomal protein S2 TERM 787 780567 - 780554 - g 75 -2.4 -5.27938 | ATTGCTAAAGAAAAA GAAG TGATTG CTTC TCAAATTCAAGGAAA tsf 779924 - 780772 + | elongation factor Ts TERM 788 781335 - 781345 + G 78 -5.4 -5.02074 | AAATATGATTTTGTT TCCT ATA AGGA TTTTTTGAGCAATCA pyrH 780780 - 781526 + | uridylate kinase frr 781504 - 782046 + | ribosome recycling factor TERM 789 782039 - 782023 - f 84 -6.6 -5.09521 | opp_overlap 782026, overlap 782028 TTAACAAAGCAAAAA GAAGCT GAAAT AGCTTC AATATAAGTATACTT CpB0727 782419 - 782934 + | hypothetical protein CpB0728 782921 - 783997 + | ATP:guanido phosphotransferase TERM 790 784175 - 784130 - T 87 -6.4 -5.4833 | GTAGGGAACAAAAAA GCCAAGAAAACATAAAGT TATACGGCCG ACTCTACATCTTCTTGGC TTTCCCCCTGAATGC CpB0729 787007 - 784248 - | outer membrane secretion protein Q CpB0730 788512 - 787004 - | serine/threonine-protein kinase fliN 789643 - 788528 - | type III secretion system protein TERM 791 789357 - 789377 + g 76 -6.9 -4.5442 | overlap 789346 TCCTGAAGGTCTTCT TCTGATGTT AGG AACAACAGA TTTTCTACTTCCCAA TERM 792 789570 - 789545 - G 93 -11.9 -3.72893 | opp_overlap 789545 CAGTTCCTTAGGAAA CTCAGGAGCAG CAAC CTGCTCCTCAG TCTTCCCTAGGGAAC TERM 793 789545 - 789570 + g 86 -11.9 -3.08679 | opp_overlap 789545 CAGTTCCTTAGGAAA CTCAGGAGCAG CAAC CTGCTCCTCAG TCTTCCCTAGGGAAC CpB0732 790495 - 789653 - | hypothetical protein CpB0733 791005 - 790499 - | hypothetical protein TERM 794 790815 - 790839 + g 100 -10.1 -5.13473 | CTTGTTGTACCTTCG TCCAACAAATC GCG GAGTTGTTGGA TTTTTTGCATATAGT yopN 792351 - 791023 - | type III secretion system ATPase TERM 795 791522 - 791481 - G 100 -12.9 -5.07567 | GTAGAGTGGAAAAAA CCGATGGAGTGTATCCTGC TCTA GCAGGAGGCTCTCCAGCGG CTAACCCCACTTCCC TERM 796 792136 - 792121 - G 71 -9 -3.30243 | ACTCACTCCTGATAA CTCTCC TAAA GGAGAG AGAAAGGCAAAACTC CpB0735 793027 - 792353 - | hypothetical protein CpB0736 793510 - 793061 - | hypothetical protein CpB0737 793783 - 793529 - | hypothetical protein CpB0738 794092 - 793805 - | hypothetical protein CpB0739 796622 - 794100 - | forkhead domain-containing protein TERM 797 796128 - 796108 - G 70 -2.5 -5.0538 | overlap 796111 GCTGATGCTAAAAAA GCATCAGCA AGC TCCTGATCC CCACTTGTAATTGGA CpB0740 797043 - 796636 - | hypothetical protein hemA 798414 - 797395 - | glutamyl-tRNA reductase CpB0742 798912 - 798694 - | hypothetical protein TERM 798 798843 - 798868 + g 72 -9.2 -3.11326 | opp_overlap 798846, overlap 798846 CAAGACTAAGATCCA TAAGTTTCGT CTTAGT ACGAAACTTA TATGTTGAGCTTGTC TERM 799 799866 - 799856 - g 75 -3.2 -5.16841 | GCATAGCAATAAAAA TAGC CTC GCCA ATTTTTGAATCGCAA TERM 800 800399 - 800414 + G 72 -6.2 -4.3255 | ACGGTATGCATATTC GTAATC TTTT GATTAC TTTCTTCCTTAAAAC CpB0743 798964 - 800772 + | DNA topoisomerase IV subunit B TERM 801 801923 - 801899 - g 70 -10 -2.56728 | opp_overlap 801898 801901, overlap 801877 801898 801901 ATGACCTACATCAAG CAGTGCTCCA TGCTC TGGAGCCCTG GCTTCATGAGCTTGC CpB0744 800776 - 802212 + | DNA topoisomerase IV subunit A CpB0745 802317 - 802616 + | hypothetical protein CpB0746 802616 - 802936 + | hypothetical protein CpB0747 803223 - 804200 + | ribosomal large subunit pseudouridine synthase A CpB0748 804310 - 804546 + | hypothetical protein TERM 802 804570 - 804543 - f 70 -4.2 -4.69656 | gap 1, opp_overlap 804546 804548, overlap 804538 804546 804547 AATTATGGAAGAAAA GTAGC-CTTAAGC CTA GCTTAAGTACTTC TCATTGAAATTGCTA TERM 803 804548 - 804564 + F 73 -9.5 -2.89447 | opp_overlap 804547 804546 804543 804538, overlap 804546 TGGAAGAAAAGTAGC CTTAAGC CTA GCTTAAG TACTTCTCATTGAAA TERM 804 804656 - 804646 - f 74 -6.8 -4.40605 | ACGCATAAAGATAAA CTCG GAC CGAG CAGGACTCGAACCTG TERM 805 804815 - 804804 - f 82 -4.4 -5.5112 | TCTACCAAGAAAAAA GTCA ATTC TGAC ACAAGATTTTCTTGT TERM 806 805390 - 805374 - g 84 -3.6 -5.58209 | GTAAATTTAAAAAAA GGGCAG TTTCT CTCCCC TTGGGATATGGAAGG TERM 807 805460 - 805444 - g 73 -3.7 -5.02606 | CAGGAAATAACAAAA TCTTACT TAC AGAAAGA GGGTGTAGCTTCGGT CpB0749 804990 - 805799 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 808 805966 - 805954 - g 95 -3.3 -5.93252 | TTTAAAAATAAAAAA GGTGA ATG TCTCC AAACAAATTTGCTCT CpB0750 805796 - 806284 + | hypothetical protein TERM 809 806668 - 806699 + G 75 -10.2 -2.87132 | opp_overlap 806647 806669 806691 806697, overlap 806647 TGATGATTTGCAACT AGGTTCCTGCCT CCATAAAA AGGCAGGAACCC TATCTGGAGGGGAAC TERM 810 806698 - 806669 - g 100 -15.1 -2.72661 | opp_overlap 806647 806668, overlap 806647 806691 806697 GATGATTTGCAACTA GGTTCCTGCCTCC ATAA AAAGGCAGGAACC CTATCTGGAGGGGAA CpB0751 806291 - 807013 + | ABC transporter CpB0752 807834 - 807010 - | hypothetical protein TERM 811 807499 - 807475 - G 70 -2.9 -4.95547 | opp_overlap 807475, overlap 807467 TTGACAATAAGAAAA TCCTAACAAAA GGA TTCTATGAGGA CGACGCATCTCCTCT CpB0753 808118 - 807891 - | hypothetical protein CpB0754 810679 - 808184 - | hypothetical protein TERM 812 809126 - 809141 + g 73 -3.9 -4.92756 | opp_overlap 809121, overlap 809127 CCGAAAATAACTTCG TGCCG TAGATT CGGCG TTTGTTTTTGCTAGT CpB0755 810884 - 813502 + | hypothetical protein TERM 813 813506 - 813539 + T 75 -4.7 -4.86902 | gap 1, overlap 813508 TATTCCAACTAATTG CATCC-TTAGGAGTTT TTA GAGCTCCTAAAGGATC TTTTCTTCTCCTTTA TERM 814 813508 - 813537 + T 73 -7.3 -4.03023 | gap 1, overlap 813506 TTCCAACTAATTGCA TCC-TTAGGAGTTT TTA GAGCTCCTAAAGGA TCTTTTCTTCTCCTT TERM 815 813750 - 813798 + T 72 -9.1 -2.69151 | gap 1, opp_overlap 813747 813745 813780, overlap 813747 ATTTATTGAAGATCG TTCTAGTGTGTTGGTAAGGCCT CAACAA AGGCCTTACCAAAGCAC-ATAA TAATCTCTCCAAACG CpB0756 815784 - 813829 - | hypothetical protein TERM 816 815310 - 815324 + g 72 -7.8 -3.79747 | overlap 815321 TCTTAGTTTCCCACT CCGCAG CGA TTGCGG TTTCCTCATCAGTAG TERM 817 815865 - 815841 - R 100 -7.9 -6.60239 | opp_overlap 815840 815841 AAAAATAAAAAAAAA GCTCTCACTAA TAA TTAATGCGAGC CTGTTTTTAAAGATT CpB0757 817164 - 815896 - | hypothetical protein mviN 818910 - 817267 - | hypothetical protein TERM 818 817467 - 817424 - GH 82 -4.7 -5.36441 | gap 1, opp_overlap 817427, overlap 817428 CTCTCAGATAAAAAA GCAATTGCTTGAGCCGTTAT GGAGG ATAAGGGC-CAAGCAAGTGG TGTGAGGGGGTTTAA TERM 819 817463 - 817428 - GH 82 -8.5 -4.01646 | gap 1, opp_overlap 817427, overlap 817424 CAGATAAAAAAGCAA TTGCTTGAGCCGTTAT GGAGG ATAAGGGC-CAAGCAA GTGGTGTGAGGGGGT TERM 820 817917 - 817893 - GH 93 -10 -4.18494 | CACTCTGAGGGAAAA GTCCGTGTTC ATAAA GGACACGGAC TCCAGGTAAAGCTAA TERM 821 818510 - 818499 - GH 77 -5.8 -4.74215 | ACATCATTAAGAAAA TGCC ACAG GGCA AGAGTATCATAGTAA CpB0759 818894 - 819070 + | hypothetical protein TERM 822 820212 - 820195 - g 73 -3.5 -5.00765 | AACGAACTAGAAAAA TTCCTAA GTAT TTAGAAA CCCCTGGTGGGCCTG CpB0760 819405 - 820286 + | endonuclease IV TERM 823 820350 - 820373 + T 81 -7.5 -4.37092 | gap 1, opp_overlap 820350 TGAAATCAAAAAAAA CGCCATACTG ATATA CAGT-TGGCG TTTTCTAGAAAAGAT TERM 824 820373 - 820350 - T 100 -7.5 -6.02546 | gap 1, opp_overlap 820350 TGAAATCAAAAAAAA CGCCATACTG ATATA CAGT-TGGCG TTTTCTAGAAAAGAT rpsD 821034 - 820405 - | 30S ribosomal protein S4 TERM 825 820707 - 820695 - G 75 -9.1 -3.71848 | GTCCGTGAGCAACAA GCTGC TGA GCAGC AAAAATTGTTTTTGC yceA 821251 - 822225 + | hypothetical protein CpB0763 822974 - 822306 - | uridine kinase TERM 826 823123 - 823069 - RH 89 -6.7 -5.58522 | gap 1, opp_overlap 823070, overlap 823070 823122 GAGACAAAAGAAAAA GCTTCGTGATCAGAAATTGA-AATCT TTAG ATATAGTCATTTTCTGATCACGAAGT TTAGGATAGAATTCT TERM 827 823070 - 823122 + rH 86 -10.2 -3.61103 | gap 1, opp_overlap 823070 823069 AGACAAAAGAAAAAG CTTCGTGATCAGAAATTGA-AATCT TTAG ATATAGTCATTTTCTGATCACGAAG TTTAGGATAGAATTC TERM 828 823122 - 823070 - RH 93 -10.2 -3.92673 | gap 1, opp_overlap 823070, overlap 823069 AGACAAAAGAAAAAG CTTCGTGATCAGAAATTGA-AATCT TTAG ATATAGTCATTTTCTGATCACGAAG TTTAGGATAGAATTC CpB0764 824992 - 823295 - | putative efflux protein TERM 829 823856 - 823839 - GH 80 -2.7 -5.4251 | CCGATATAGAAAAAA CTTGTTT CAGG AGACAAG CCTAAGTTACTTCCC TERM 830 824365 - 824376 + gH 71 -4.4 -4.79451 | opp_overlap 824365, overlap 824360 ATAAATCTTTGAAAC TCAC CAAG GTGA TTTTCTGTTTCACAT TERM 831 825101 - 825087 - gH 88 -7.2 -4.84527 | opp_overlap 825087 TCCACACATCAAAAA CCTTTT ACC AAAAGG TGGATTCTTGTTGCA TERM 832 825753 - 825725 - gH 82 -3.1 -5.4505 | CTCCCCAATAAAAAA TGCCTGGGAACAC TAT GTATTATCAGACA GGCAAGCACTTCTTG TERM 833 826026 - 826038 + GH 79 -3.3 -5.28561 | overlap 826035 CTGCATCGCGGAGTG TCACC TGA GGAGA TTTTTATTCTCTCTT CpB0765 824991 - 828065 + | putative exodeoxyribonuclease V gamma TERM 834 828189 - 828152 - g 76 -10 -3.24076 | gap 1, opp_overlap 828178, overlap 828150 828148 828153 828187 TTACTATAGAACAGA TCGTGTT-GCGAGCCTT GATTG AAGGCTCGCTAACACAT GTAGAACATGCCTTA TERM 835 828188 - 828153 - g 91 -13.5 -2.53964 | gap 1, opp_overlap 828178, overlap 828152 828150 828148 828187 TACTATAGAACAGAT CGTGTT-GCGAGCCTT GATTG AAGGCTCGCTAACACA TGTAGAACATGCCTT TERM 836 829618 - 829602 - g 81 -5.1 -5.18715 | opp_overlap 829604, overlap 829604 ACAAAAAGAACAAAA GATTCCC CTA GGGAATA TGGTTGTCCTGGTCT TERM 837 829616 - 829604 - g 76 -7.7 -4.17151 | opp_overlap 829604, overlap 829602 AAAAAGAACAAAAGA TTCCC CTA GGGAA TATGGTTGTCCTGGT TERM 838 831113 - 831126 + G 70 -3.8 -4.81851 | opp_overlap 831113 TCCGTGGCATAGACA CCCA AGGAAA TGGG TTTTTCGCTTTAAAT CpB0767 828052 - 831204 + | exodeoxyribonuclease V 135K chain CpB0766 832177 - 831164 - | hypothetical protein TERM 839 831247 - 831233 - G 100 -10 -4.68908 | GGGAGGTAAAATAAA GAGCTG ATC CAGCTC CATAAGCTTTTCTTC CpB0768 833354 - 832167 - | aromatic amino acid aminotransferase TERM 840 832249 - 832271 + g 74 -7.7 -3.9644 | overlap 832251 AAATTCATTCTTCCT CCCGCTGTT GTATA AACAGCGTG TTGTTCTCTTAAAAA TERM 841 832251 - 832269 + g 73 -8.9 -3.56921 | overlap 832249 ATTCATTCTTCCTCC CGCTGTT GTATA AACAGCG TGTTGTTCTCTTAAA TERM 842 832360 - 832347 - G 71 -2.4 -5.18726 | TTGGGACAATAAAAA GTCA AATGTA TGAC CGGCAACCTTACGCA greA 835656 - 833488 - | fused transcript cleavage factor/uncharacterized domain-containing protein TERM 843 835403 - 835387 - G 71 -2.3 -5.21709 | opp_overlap 835387 GGCTATATCAAAAAA CATCT GGCTGTT AGATG TTTGCAAATCTAAAA CpB0770 835754 - 836197 + | hypothetical protein CpB0771 836268 - 837671 + | Na(+)-translocating NADH-quinone reductase subunit A CpB0772 838690 - 837692 - | delta-aminolevulinic acid dehydratase CpB0773 839209 - 839045 - | hypothetical protein TERM 844 839160 - 839146 - G 71 -10 -2.57132 | overlap 839145 GCTTGGGGTCATAAG CGACGT TAT ACGTCG TACTCCCCTGTAGGG CpB0774 839281 - 840876 + | hypothetical protein CpB0775 840981 - 841235 + | hypothetical protein TERM 845 841331 - 841355 + T 100 -15.9 -5.24531 | TCCAGATCTCTCTCG GGGATGAAGAT TTT ATCTTCATCCC TTTTTTATAAGAAAT CpB0776 842309 - 841440 - | geranylgeranyl pyrophosphate synthase CpB0777 842951 - 842325 - | UDP-N-acetylglucosamine pyrophosphorylase tctD 843733 - 843026 - | trans-activating transcription regulator TERM 846 843123 - 843142 + g 95 -5 -5.7946 | opp_overlap 843122 CGAATCGTTACAATT TTAGATCC GTAG GGACCTAA TTTTTTTCTTAAAGA TERM 847 843702 - 843690 - G 76 -7.7 -4.20025 | AATTGCGAAGATAAA CTGAG ATC CTCAG TAACAAACAATATGA TERM 848 844476 - 844494 + G 76 -10.4 -2.93335 | overlap 844475 AGTATTGAACAGCTG CTAACAGA TTT TCTGTTAG ATTATATTTCTGCGC CpB0779 843930 - 845759 + | hypothetical protein TERM 849 846015 - 846033 + G 70 -6 -4.29117 | overlap 846022 TGCTTCTAAGCACAT CTCTTCGG ACT TTGAAGAG TCTTTTGTTTTTCTC TERM 850 846022 - 846035 + G 79 -3.1 -5.35224 | overlap 846015 AAGCACATCTCTTCG GACTT TGAA GAGTC TTTTGTTTTTCTCGC TERM 851 846368 - 846407 + G 81 -5.3 -5.08824 | gap 2 AAATAACTCAAGGAT GTTTTTCTATAGTTTCTGG AGGC CCAGGAAC-A-GGAAAAAC TTTTTTAGCTGCACA TERM 852 846883 - 846893 + G 74 -4 -4.95155 | TCTGTATTGCGTGGC GAAA TGA TTTC TTTTTCTCCTCTCCC recD 845926 - 847407 + | exonuclease V alpha-subunit TERM 853 847452 - 847429 - T 93 -5.2 -6.11229 | opp_overlap 847429 ATCAAAATAAAAAAA CCCTCAAAGA ATAC TCTAAGAGGG TTTTTTTGCTGCGAA TERM 854 847429 - 847452 + T 84 -5.2 -5.52384 | opp_overlap 847429 ATCAAAATAAAAAAA CCCTCAAAGA ATAC TCTAAGAGGG TTTTTTTGCTGCGAA CpB0781 848328 - 847480 - | hypothetical protein rpsT 848658 - 848359 - | 30S ribosomal protein S20 CpB0783 848919 - 850124 + | hypothetical protein TERM 855 850962 - 850977 + G 80 -9 -4.03167 | AGTGTCGTATTCGGA CGCAAG CCTA CTTGCG TTGTTTCCATTGTCG TERM 856 851131 - 851101 - g 74 -6.8 -4.38748 | opp_overlap 851100 851097, overlap 851098 851102 TGCAGAAAGAAATAA GTTTGCTGCTGCAA AGT TGGCAGCAGCTAAG CGTAAGTTGTATAAA TERM 857 851130 - 851102 - g 77 -10.3 -3.22164 | opp_overlap 851100 851097, overlap 851101 851098 GCAGAAAGAAATAAG TTTGCTGCTGCAA AGT TGGCAGCAGCTAA GCGTAAGTTGTATAA TERM 858 851756 - 851776 + G 81 -7.5 -4.7261 | opp_overlap 851747 851757, overlap 851757 AAAGAGGTCTTAAAG ACGCTTACG GAT CGTGAGCGA TTTGTTTTGATCCAT TERM 859 851775 - 851757 - g 71 -8.8 -3.36341 | opp_overlap 851756 851757 AAGAGGTCTTAAAGA CGCTTACG GAT CGTGAGCG ATTTGTTTTGATCCA TERM 860 851757 - 851775 + G 83 -11 -3.42481 | opp_overlap 851757, overlap 851756 AAGAGGTCTTAAAGA CGCTTACG GAT CGTGAGCG ATTTGTTTTGATCCA CpB0784 850283 - 852001 + | RNA polymerase sigma factor TERM 861 852388 - 852373 - gf 71 -4 -4.89852 | gap 1 CTAGAGGTAGAAAAA GAAC-GG CCA CCTGTTC CCAACCTATTAAATC CpB0785 852055 - 852459 + | dihydroneopterin-triphosphate epimerase CpB0786 852432 - 853784 + | dihydropteroate synthase CpB0787 853810 - 854322 + | dihydrofolate reductase CpB0788 854279 - 855019 + | hypothetical protein CpB0789 855074 - 855700 + | coenzyme pyrrolo-quinoline-quinone biosynthesis protein TERM 862 855805 - 855766 - T 100 -18.8 -3.57792 | opp_overlap 855768 855771 855803, overlap 855768 855771 TCATGCATCTGTAAA CAGAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTCTT TGTCTCAAGGTAATT TERM 863 855768 - 855803 + T 100 -19.2 -4.04206 | opp_overlap 855766 855768 855771, overlap 855771 ATGCATCTGTAAACA GAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTC TTTGTCTCAAGGTAA TERM 864 855803 - 855768 - T 100 -21.4 -3.36694 | opp_overlap 855768 855771, overlap 855766 855771 ATGCATCTGTAAACA GAATCCCCCCTCCTAA AGTA TTAGAAGGGGGGATTC TTTGTCTCAAGGTAA TERM 865 855800 - 855771 - T 100 -17.3 -3.82202 | opp_overlap 855771 855768, overlap 855768 855766 CATCTGTAAACAGAA TCCCCCCTCCTAA AGTA TTAGAAGGGGGGA TTCTTTGTCTCAAGG TERM 866 855771 - 855800 + T 100 -15.1 -4.14627 | opp_overlap 855768 855766 855771, overlap 855768 CATCTGTAAACAGAA TCCCCCCTCCTAA AGTA TTAGAAGGGGGGA TTCTTTGTCTCAAGG recA 856919 - 855858 - | recombinase A CpB0791 857833 - 857291 - | 5-formyltetrahydrofolate cyclo-ligase TERM 867 857749 - 857727 - G 80 -9.1 -3.90856 | opp_overlap 857726 857723 857718 AAGCTGCGAACGAAA GAGGCCACT GCAGA AGAGGCCTC ATGCTTGCGTTCTTC CpB0792 859129 - 857843 - | hypothetical protein CpB0793 859704 - 859120 - | hypothetical protein CpB0794 861104 - 859713 - | hypothetical protein TERM 868 861416 - 861426 + G 75 -5.4 -4.90381 | GGTCTGCTTTGCCTT GGAA TCC TTCC TTTTGTTATATTAAG TERM 869 861457 - 861467 + G 70 -2.6 -4.93968 | AGTCCTACGTTTTAT TATT CTT AATA TTTTTCATTCTCCAT CpB0795 861206 - 861502 + | hypothetical protein TERM 870 862259 - 862241 - g 76 -6.8 -4.48741 | GAAGCTATGAGAAAA TTCCCTTT ATC AAAAGGAA AGCTGCGTTTCTGGA nifR3 861481 - 862488 + | nitrogen regulating protein CpB0796 865055 - 862440 - | fused DNA topoisomerase I/SWI domain-containing protein TERM 871 862706 - 862718 + g 70 -2.7 -5.00884 | ATAAAGGACCTGTTT TCTTT TCT GAAGA TTTTTTAACCGAGCT TERM 872 864154 - 864166 + g 75 -9.1 -3.63627 | opp_overlap 864152 CTATCTAAATCGACG CCCTC ATA GAGGG TTTGCGCTATAGACA TERM 873 864317 - 864335 + g 71 -6.6 -4.20025 | opp_overlap 864317 AGGATTTCTCTAACA GCTCGGCA TAG TGACGGGC TTTCTCTTCAGAGTT TERM 874 864377 - 864388 + g 73 -5.8 -4.55697 | CATCATTTTCGGTTT TCCC TTCA GGGA TTTCTTTCTCCCACT CpB0798 865662 - 866456 + | hypothetical protein CpB0799 867785 - 866463 - | RNA polymerase factor sigma-54 CpB0800 869707 - 867788 - | hypothetical protein TERM 875 868134 - 868151 + g 71 -4.2 -4.90079 | opp_overlap 868126 868134, overlap 868145 TCATCAAGGAAAAGT TCCAAA TGTGTC TTTGGA TTTTGTTGTTCGGAT CpB0801 869810 - 870520 + | uracil-DNA glycosylase CpB0803 870505 - 870750 + | hypothetical protein CpB0802 871353 - 870733 - | putative deoxyribonucleotide triphosphate pyrophosphatase CpB0804 871538 - 872812 + | hypothetical protein TERM 876 873056 - 873046 - g 75 -3.2 -5.1675 | GTAGTCATCAAAAAA GGAA AAG CTCC TATTGTCTTAACGAA groEL 872923 - 874503 + | chaperonin GroEL CpB0806 874827 - 875417 + | 2-cys peroxiredoxin BAS1 precursor CpB0807 875803 - 875414 - | hypothetical protein CpB0808 876527 - 875910 - | protein p60 precursor CpB0809 877095 - 876517 - | peptidoglycan-associated lipoprotein precursor tolB 878387 - 877092 - | translocation protein TolB CpB0811 879207 - 878419 - | hypothetical protein TERM 877 878625 - 878664 + g 95 -11.6 -3.762 | overlap 878628 CATACCCTTTAGAGG GGAGAGCTATGTGAGT GCGAAATA ACTCACATAGCTCGTC TTCTTGAGTTGCTTT TERM 878 878628 - 878661 + g 95 -14.1 -2.66329 | overlap 878625 ACCCTTTAGAGGGGA GAGCTATGTGAGT GCGAAATA ACTCACATAGCTC GTCTTCTTGAGTTGC TERM 879 878729 - 878753 + g 100 -10.9 -4.56358 | GGCCAGGAGATATTT TTGAGAGAAGT TTC ACTTTTCTCAA TTTTATCTACATGTA exbD 879618 - 879211 - | hypothetical protein exbB 880313 - 879615 - | ExbB TERM 880 880978 - 880993 + G 74 -7.6 -3.99324 | opp_overlap 880978 ACACTGCCCTACGAA GAGAAG GAGC CTTCTC TTTATCCTGATACAC dsbD 880474 - 882618 + | thiol:disulfide interchange protein TERM 881 882688 - 882705 + F 100 -12.7 -5.38054 | opp_overlap 882684 CCTTAAAAATTGTTA GGGCAGC ATAT GCTGCCC TTTTTATTTGTAACA TERM 882 883225 - 883208 - g 74 -6.9 -4.31293 | opp_overlap 883207 GCACATAGTAAGAAA CTCGCCG CAAT CGGAGAG GTCGGTTTAGATTAT TERM 883 883671 - 883661 - g 74 -6.8 -4.27316 | GTTGCCAATGTAAAA GGGA TGT TCCC ACAAGAGCTTGCAGC mttC 882941 - 883726 + | MttC TERM 884 883729 - 883753 + F 75 -10.1 -2.5671 | overlap 883728 883727 TCTGCACGGTTAATT TGATGGAGTTC ATA GAACTCCATAA CCTTTCTATTTTGTC CpB0816 883864 - 884757 + | succinate dehydrogenase subunit C sdhA 884761 - 886641 + | succinate dehydrogenase flavoprotein subunit sdhB 886655 - 887428 + | succinate dehydrogenase iron-sulfur subunit CpB0819 890396 - 887430 - | hypothetical protein TERM 885 888084 - 888070 - G 72 -7.2 -3.96148 | TGGTCGGAGCAGAAA TCATGA AAG TCATGA ACTACATGTTGCAAA TERM 886 889493 - 889527 + g 72 -9.4 -3.23449 | overlap 889491 TCTCATGGACATTTT GTAGTTTTTGCATCAA ATA TTGATGCGAGAGCAAC TGTTGGATTTGTGCT CpB0820 892241 - 890427 - | hypothetical protein TERM 887 890803 - 890821 + g 75 -3.1 -5.24129 | GTTTTTGAGAAGCTG TCGGCAG TATCC TTGCTGA TTTTTTGTAACGAAA TERM 888 891826 - 891837 + g 71 -2.2 -5.24551 | AAGGCTTTCCCTACA GCTG CGGA TAGC TTTTTCTTCATTTCA rsbU 894145 - 892238 - | hypothetical protein TERM 889 892538 - 892518 - G 82 -10.5 -3.69434 | GGAAGGAAGCCTAAA GCCATTCCA GGA TGGAATAGC CAAGAAGTCTCGCCA TERM 890 893231 - 893269 + g 89 -7.3 -5.0538 | opp_overlap 893254, overlap 893234 893236 GAAATAGGCAGTGTA CATGCGAGCTCTGCGCC ATAAA GGCGCAAAGCTCTCTTC TTTTTTAGCATAGGA TERM 891 893234 - 893266 + g 100 -13.4 -4.63089 | opp_overlap 893254, overlap 893231 893236 ATAGGCAGTGTACAT GCGAGCTCTGCGCC ATAAA GGCGCAAAGCTCTC TTCTTTTTTAGCATA TERM 892 893236 - 893264 + g 100 -14.6 -3.91465 | opp_overlap 893254, overlap 893234 893231 AGGCAGTGTACATGC GAGCTCTGCGCC ATAAA GGCGCAAAGCTC TCTTCTTTTTTAGCA CpB0822 894303 - 894151 - | hypothetical protein CpB0823 894496 - 895329 + | hypothetical protein TERM 893 895352 - 895366 + F 71 -6.4 -4.15788 | opp_overlap 895361 TAGGAGGGGCGAATT CTTCAG CAA CTGGAG TTTCTTCAGACGGTT CpB0824 895450 - 896520 + | hypothetical protein TERM 894 896585 - 896612 + F 93 -11.5 -4.0342 | opp_overlap 896585 GATAAACAGATAAAA TATAGCTCAGA ATATAA TCTGAGCTATA TTCTTCTTACTTGCA TERM 895 896612 - 896585 - f 100 -11.5 -4.76423 | opp_overlap 896585 GATAAACAGATAAAA TATAGCTCAGA ATATAA TCTGAGCTATA TTCTTCTTACTTGCA TERM 896 898050 - 898061 + G 70 -5.8 -4.4009 | opp_overlap 898049 GCAGAATCAGCAATT GCTC ACAG GAGC TTTTATGGACTGGAA CpB0825 896623 - 898665 + | hypothetical protein CpB0826 898874 - 900019 + | hypothetical protein TERM 897 900060 - 900090 + F 81 -7.9 -4.39133 | gap 1, opp_overlap 900070 AAGTAAATCGTAAGC TTGGAATTCATGAA GTGA TTCAT-AATTCCAA TTTTCATACTTGTTG CpB0827 900168 - 901181 + | hypothetical protein CpB0828 902308 - 901259 - | hypothetical protein eno 903854 - 902568 - | phosphopyruvate hydratase CpB0830 906019 - 904046 - | excinuclease ABC subunit B CpB0831 907062 - 906028 - | tryptophanyl-tRNA synthetase CpB0832 907625 - 907071 - | hypothetical protein TERM 898 907123 - 907143 + g 70 -2.5 -4.96848 | TTTAATGATGTAATT TCTTCTTGA ATT TCCTGAAGA TTTTTCTCTCCAACA TERM 899 907653 - 907664 + r 71 -3 -5.14894 | opp_overlap 907653 TGTATCGGGAAAGAG GTTA CTTT TAAC TTTTTCTAGTTTTTT CpB0833 908381 - 907629 - | plasmid virulence protein pGP6-D TERM 900 907830 - 907846 + g 89 -6.5 -5.28942 | GAACTCTTTGCGAAT GCGATCT AAA AGCTCGC TTTTTCTTTCCCCTC soj 909153 - 908386 - | Spo0A activation inhibitor thrS 911093 - 909186 - | threonyl-tRNA synthetase TERM 901 911167 - 911186 + H 74 -2.2 -5.45813 | opp_overlap 911167, overlap 911169 911178 TGATCAAAGCAAGAA GCTTTTTT TTAT AAAAAAAC TTTTATTTTTTAATA TERM 902 911205 - 911186 - H 78 -2.2 -5.60993 | opp_overlap 911178 TTTTTTATAAAAAAA CTTTTATT TTTT AATACAAG TTCCAAAGCGCCAGG TERM 903 911490 - 911507 + G 79 -8.5 -4.2074 | ATTCTTATATATCGT CCTGTTA GCTT TAACAGG TTTCTATCTTACCAA CpB0836 911287 - 912204 + | hypothetical protein TERM 904 912229 - 912247 + T 100 -10.3 -5.52986 | opp_overlap 912229 GCTTTACATGAAAAA GCTCGGT ATCAA ACCGAGC TTTTTTTGATCAGAT TERM 905 912247 - 912229 - T 100 -10.3 -4.8048 | opp_overlap 912229 GCTTTACATGAAAAA GCTCGGT ATCAA ACCGAGC TTTTTTTGATCAGAT CpB0837 913609 - 912275 - | hypothetical protein TERM 906 913395 - 913408 + g 82 -2.4 -5.59357 | CTACTTTTAGTAGTT GAAG ATGTAG CTTC TTTTTTTCCTGTACT CpB0838 915108 - 913642 - | hypothetical protein TERM 907 914859 - 914891 + g 71 -4.1 -4.91109 | opp_overlap 914868 CTGAGGATTCTTTCC CAGCAGCAACTCC CTGTTGT GGAGCTGTTTCTG TTTTTGTAGTCGAGG CpB0839 915507 - 915145 - | hypothetical protein lcrH 916223 - 915528 - | LcrH TERM 908 915732 - 915760 + g 72 -9.8 -2.78384 | gap 1 GTTAGATTCTTCGGG TTGCTG-TAGCTT CAAT AAGCTATCAGCAA TGTAGTAAGGAGGAA TERM 909 916615 - 916639 + G 76 -10.9 -2.52464 | opp_overlap 916611, overlap 916618 916619 GAGGGGGACAAGGCG CAATCATTATC AGA GATAATGGTTG TGGCTTCAGAGCCGA TERM 910 917288 - 917298 + G 82 -6.8 -4.91109 | GCTTCTGCCTCTACA CAGG TAT CCTG TTTTTGTGCTGAAGC TERM 911 917828 - 917842 + G 95 -5.6 -5.60689 | overlap 917830 TCTACGCCTTCAGGT GACTCC TGA GGAGGC TTTTTTCTTCTCTCA TERM 912 917896 - 917913 + G 71 -4.9 -4.67943 | gap 1, opp_overlap 917887 917896 TAGGAATAGAAATAT CAC-AGGT AGG ACCTTGTG TTTTCTCTATTGAAA mutL 916446 - 918188 + | DNA mismatch repair protein TERM 913 919216 - 919206 - g 70 -2.6 -5.04597 | opp_overlap 919206 ATGTATAGATAAAAA TAAA AAT TTTA GTTTGACTGCACGTC CpB0842 918193 - 919260 + | X-Pro aminopeptidase TERM 914 919280 - 919300 + F 75 -4.9 -4.97405 | opp_overlap 919286, overlap 919254 AATTGGATTTAGTTT TTAAATTTA AAT TGAATTTAA TTTGTTTTTATAAAT TERM 915 919336 - 919348 + F 75 -4.9 -4.87389 | TTTTTTGTTTTTTAA GTTAT CTT ATAAC TTTATTTTTAACCTG TERM 916 919984 - 919972 - g 84 -6.3 -5.07652 | TCCTGTAAAACAAAA GATAC GTC GTATC GGTGTGGATAAGTTT TERM 917 920102 - 920114 + G 70 -7.7 -3.60098 | CGGTACCTTGCTGTT GGAGA TGT TCTCC TTTGGGATGGCAACT CpB0843 919406 - 920683 + | hypothetical protein TERM 918 921277 - 921293 + G 73 -2.9 -5.14563 | GATGCGTAAGGAGGG CTGCAGT GTT GCTGGAG TTTTTTCCTCCAGAA CpB0844 920684 - 922948 + | general secretion pathway protein D precursor xcpR 922938 - 924428 + | XcpR TERM 919 924561 - 924545 - g 79 -8.1 -4.25104 | opp_overlap 924545 GCTCGCCCAGGAAAA TATCCAA GTT TTGGATA TTCGTGAGGTCGCCT CpB0846 924438 - 925613 + | XcpS CpB0847 925637 - 926008 + | general secretion pathway protein g precursor CpB0848 926012 - 926458 + | hypothetical protein TERM 920 926488 - 926469 - g 78 -5.8 -4.76041 | gap 1, opp_overlap 926469 TATAGCTATGAAAAA GCA-AAAGC GTG GCTTTGTGC TTATGGAATTACTCA CpB0849 926443 - 926985 + | hypothetical protein CpB0850 926969 - 927994 + | hypothetical protein CpB0851 928028 - 928555 + | hypothetical protein TERM 921 928612 - 928574 - T 73 -8.3 -3.53224 | opp_overlap 928563 928574 928609 TACTTTTTCCCTAAA GGCAAAATGTTGAAG CCCTCCTTT CCTCAACTTTTTGCC TTGTTTTCAGGCATG CpB0852 929690 - 928821 - | YOP proteins translocation protein T CpB0853 929985 - 929698 - | translocation protein S yscR 930917 - 929997 - | type III secretion system protein CpB0855 931633 - 930932 - | type III secretion system protein CpB0856 932587 - 931754 - | hypothetical protein CpB0857 933594 - 932587 - | secretion protein TERM 922 932762 - 932775 + g 76 -6.7 -4.42653 | TTTGTATATGGTGTA GGGTT GAAG AACCC TTTTGTACCTCCCAT TERM 923 933391 - 933435 + g 70 -3.7 -4.82901 | gap 3, overlap 933403 CGCGATATCCCACAT TTGC-TCAGTAGCTGCTCCGGC TGTA GCCGCTGCAGCT--TGAGGCAA TTTTTGTGCAGCCAC CpB0858 934067 - 934624 + | hypothetical protein CpB0859 934767 - 935285 + | hypothetical protein TERM 924 935615 - 935605 - g 75 -5.4 -4.77165 | GTGCTTATAAGAAAA TCTG AAT CAGA AGGAGCTTTTTTTGA CpB0860 935590 - 935760 + | hypothetical protein CpB0861 937070 - 936147 - | lipoyl synthase CpB0862 938452 - 937067 - | dihydrolipoamide dehydrogenase TERM 925 938694 - 938708 + H 77 -10 -2.99951 | overlap 938691 TTAATGGCATTTTAG CGACCT AAG AGGTCG TGATTTCATAATTGA TERM 926 938983 - 939004 + G 70 -3.6 -4.89477 | overlap 938984 CGCCTTTCTTCAAGA TCCTCCAG TAGCCT CAGGAGGG TTTTCTTCTTGCCAC CpB0863 938876 - 939340 + | hypothetical protein CpB0864 943012 - 939365 - | SNF protein TERM 927 941062 - 941084 + g 71 -4.2 -4.89521 | opp_overlap 941063 941075, overlap 941063 TCTGCGTAGATAGGA ACTGTTTTAA AAA TTGAAACAGG TTTTGTTTCAAATCT TERM 928 941095 - 941075 - G 79 -7 -4.58283 | opp_overlap 941063 941062, overlap 941063 941084 GAACTGTTTTAAAAA TTGAAACA GGTTT TGTTTCAA ATCTAAAAAGCCAGC TERM 929 941314 - 941296 - G 70 -3.8 -4.87803 | GATTTGGAAATAAAA TACGCTCA TGC TGCGCATA CTGTGTAAGAAACTG brnQ 944280 - 943042 - | branched-chain amino acid transporter CpB0866 945094 - 944465 - | endonuclease III TERM 930 944750 - 944734 - G 71 -2.3 -5.08601 | overlap 944706 CTATCCCAAGAAAAA CAGAA GCGGTTT TTCTG CCAACTCCCGGAAGT trmE 946429 - 945101 - | tRNA modification GTPase TrmE TERM 931 945985 - 945975 - G 71 -4 -4.83169 | ATTTTCTTAGAAAAA TTTC CTT GAAA ATGCGTTTGAGCAAT TERM 932 946838 - 946848 + G 81 -4 -5.40072 | GTTGCAGACTTCACC TCAT TTA ATGA TTTTTTTACCCGGAA CpB0868 946580 - 947485 + | phosphatidylserine decarboxylase TERM 933 947742 - 947728 - g 90 -5.6 -5.44119 | opp_overlap 947728, overlap 947730 CCTATTTTAAAAAAA CGGTCG TAT CGACGG CAGTGTTTATTTGAA TERM 934 948786 - 948802 + G 73 -7.3 -4.18018 | GGAGAAACAACGACG TTCGCAG ATT TTGCGAA TTTTACGTAAAAAAC CpB0869 947545 - 948870 + | hypothetical protein TERM 935 950434 - 950453 + G 70 -3.5 -4.83169 | opp_overlap 950429 950434, overlap 950432 GATGAACATACAGGA CGTCCTC AACCTG GACGACG TTTTTCTGAAGGCCT secA 949054 - 951966 + | preprotein translocase subunit SecA TERM 936 951999 - 951971 - f 100 -9.8 -4.33755 | gap 1, opp_overlap 951972 951974, overlap 951974 ATCAAGATTAAGAAA TAACCTAGAAGGA GGAG TCCTTCTAGGT-A TTTGTTTCACAGGCT TERM 937 951972 - 951999 + F 100 -11.4 -4.41616 | opp_overlap 951971 951974, overlap 951974 TCAAGATTAAGAAAT AACCTAGAAGGA GGAG TCCTTCTAGGTA TTTGTTTCACAGGCT TERM 938 951997 - 951974 - f 100 -14 -4.26924 | opp_overlap 951972 951974, overlap 951971 AAGATTAAGAAATAA CCTAGAAGGA GGAG TCCTTCTAGG TATTTGTTTCACAGG TERM 939 951974 - 951997 + F 100 -14 -3.81557 | opp_overlap 951974 951971, overlap 951972 AAGATTAAGAAATAA CCTAGAAGGA GGAG TCCTTCTAGG TATTTGTTTCACAGG CpB0872 952136 - 952333 + | hypothetical protein CpB0871 952514 - 952314 - | hypothetical protein engA 954053 - 952590 - | GTP-binding protein EngA TERM 940 953183 - 953171 - G 72 -6.3 -4.29106 | opp_overlap 953170 953171, overlap 953167 TTCGAGATGAAGAAA TCCAT TCT ATGGA ATTCTTAACGCTTTT TERM 941 953565 - 953577 + g 70 -7.7 -3.61652 | overlap 953562 953561 GCGAGGTTCTGGTAG GTTGG CTA CCAAC TTAATTCTTTGAAGA CpB0874 955402 - 954170 - | poly(A) polymerase TERM 942 954650 - 954640 - G 71 -4 -4.8487 | opp_overlap 954640 GCAGTAAAAAAAGAA TTTC AGG GAAA TGTGTTGGATTAAAC TERM 943 954922 - 954912 - G 75 -3.2 -5.14163 | AGGGAGGAAGAAAAA CGTA TGG CACG TAGGATACGCAGTTT clpX 956697 - 955432 - | ATP-dependent protease ATP-binding subunit TERM 944 955578 - 955595 + g 78 -5.5 -4.93547 | TTTCTAGGATCATCC CTAGAGC ACGA GCTCCAG TTTTTGCTTGCTTGG TERM 945 955799 - 955820 + g 70 -8 -3.71649 | AATTCAGGGATCATT CCGAAGGC AATCAG GTCTTCGG TTTCAACTTTAGCAA TERM 946 956006 - 956026 + g 72 -7.6 -3.89302 | gap 1, overlap 955997 TGGTTAGGATGCTTA CGT-CCTCC TTTA GGAGGAACG TTTGCTGTGGTTCCT clpP 957318 - 956707 - | ATP-dependent Clp protease proteolytic subunit TERM 947 956972 - 956991 + g 72 -7.2 -3.95584 | gap 1 ATCATACGGCTATGG GGAAGAGCG TGA CGCT-TTCC TTTAGTTCCTGCGGA tig 958825 - 957497 - | trigger factor TERM 948 958017 - 958033 + g 71 -4.4 -4.79826 | overlap 958026 TCGTCTAGAGATTCT GCTTGT AGTTG ACGAGC TTTTTCGTCATCTAT TERM 949 958675 - 958687 + g 76 -2.7 -5.38348 | CTTTGCGGAATCCTG GAAGT GTA ATTTC TTTTTTAATCTTTTT TERM 950 960721 - 960745 + G 81 -7.1 -4.59342 | TCGCATTACTTTTAA CTGTCCGGAAA ATC TTTCAGGTCAG TTTATTTATGATGAG TERM 951 961009 - 960993 - g 75 -2.1 -5.29782 | opp_overlap 960993 960994, overlap 960994 TAGACTTAGAAAAAA TTGCTCC TGT GGTGCAG ATTTTTAATGAAATA CpB0878 959111 - 962611 + | swf/snf helicase CpB0879 962616 - 963716 + | rod shape-determining protein TERM 952 964030 - 964040 + G 75 -5.4 -4.76041 | AGAGATGCGTAGGGA GTTG CAT CAAC TTTTTCGTGGATGTA TERM 953 964203 - 964231 + G 71 -8.3 -3.43109 | overlap 964212 ATGATGTTTTACGTT CTTTAGGGACTTC GGG GAAGTTTTTAAAG TGTTTACATAGTGTG TERM 954 964212 - 964222 + G 73 -5.4 -4.6856 | overlap 964203 TACGTTCTTTAGGGA CTTC GGG GAAG TTTTTAAAGTGTTTA TERM 955 964567 - 964553 - g 71 -8.6 -3.57263 | opp_overlap 964552 ATGTTGATGCCTAAA CTTCCA GGT TGGAAG ATTGAGTGTATTGGG TERM 956 964636 - 964648 + G 79 -3.4 -5.28683 | opp_overlap 964636 GTTGTATGCTGTAAA TCCA GAATA TGGA TTTTTTGGTGTTGCT CpB0880 963719 - 965521 + | phosphoenolpyruvate carboxykinase CpB0881 965639 - 967939 + | hypothetical protein CpB0882 967960 - 969129 + | hypothetical protein CpB0883 970148 - 969126 - | major outer membrane protein TERM 957 969253 - 969291 + g 73 -7.1 -4.23007 | gap 1, opp_overlap 969266 969281, overlap 969258 969281 ACTCTGTCGAAGTTT GTGATTTTACGAATTTTA AATT TAAAATTCGT-AAATTGC TTTTCGAGTTCTGTG TERM 958 969258 - 969287 + g 100 -12.5 -3.69437 | opp_overlap 969266 969281, overlap 969253 969281 GTCGAAGTTTGTGAT TTTACGAATTTTA AATT TAAAATTCGTAAA TTGCTTTTCGAGTTC gpsA 971318 - 970314 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CpB0885 972700 - 971315 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 959 971540 - 971562 + g 70 -7.8 -3.58343 | opp_overlap 971540, overlap 971528 TAGGGGAGCAAAGCA CTCTTGTCTA GGA TACACAAGAG TTTGACAATGGTCGC TERM 960 972177 - 972153 - G 95 -8 -5.24129 | gap 1 GGTTGGCAGAAAAAA TCCACCT-GAT TTGG ATCTAGGTGGA AGTAGTCGTTGGATT CpB0886 973080 - 972712 - | hypothetical protein TERM 961 972833 - 972820 - G 71 -6.7 -4.18488 | opp_overlap 972813 972820 ATGGATTTCAAGAAA GCGAA GAGA TTCGC TCTGTTGTTTATAAA CpB0887 974378 - 973077 - | type III secretion system ATPase CpB0888 974911 - 974375 - | hypothetical protein CpB0889 975953 - 974928 - | type III secretion system protein TERM 962 975384 - 975414 + g 100 -13.4 -3.23853 | overlap 975382 CTGTAATGTGGGCTT CTCTGCTTTTGCGT GAT ACGCAAGAGCAAAG TGTTCCTTGGGGAAA TERM 963 975417 - 975444 + g 95 -9.2 -4.53163 | overlap 975420 975426 CGCAAGAGCAAAGTG TTCCTTGGGGAA AATT TTCCCCAGGTAA TTTTCTAATGTATGG TERM 964 975420 - 975441 + g 79 -10.9 -3.21099 | overlap 975417 975426 AAGAGCAAAGTGTTC CTTGGGGAA AATT TTCCCCAGG TAATTTTCTAATGTA CpB0890 977045 - 976245 - | NifU-like protein nifS 978196 - 977042 - | nitrogen fixation protein CpB0892 978837 - 978151 - | phosphoglyceromutase CpB0893 978993 - 979700 + | putative pseudouridine synthase CpB0895 979741 - 980268 + | hypothetical protein birA 980814 - 980236 - | biotin--protein ligase CpB0896 980746 - 981993 + | stage V sporulation protein E copA 983966 - 981990 - | copper-transporting ATPase TERM 965 982137 - 982153 + g 70 -3.7 -4.88646 | TAGTGCAAGGTTCTG CGAAACA ACT TTTTTCG TTTGTTTTGCTTTTT TERM 966 983751 - 983739 - G 80 -2.7 -5.5112 | GCCAGCAAGAAAAAA TGTAA ATA CTACA AATAAGTTAGAGAGA CpB0898 984724 - 983978 - | hypothetical protein TERM 967 984621 - 984611 - G 71 -3.2 -5.00642 | opp_overlap 984620 TAAGTGATAGAAAAA CCCT TTA AAGG TTGTATGGGGCTCCC CpB0899 986051 - 984768 - | seryl-tRNA synthetase CpB0900 986095 - 987225 + | riboflavin-specific deaminase CpB0901 987286 - 988542 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein TERM 968 988646 - 988665 + G 73 -2.8 -5.12707 | opp_overlap 988628, overlap 988647 ATGGCTGATGCCCTA GTTTCTGG TACT CAGGAAAC TTTTTTGAAGTTTGG ribH 988565 - 989020 + | riboflavin synthase subunit beta TERM 969 989040 - 989060 + T 95 -14.1 -3.29325 | opp_overlap 989037 989034 989033, overlap 989038 TGTAAGAACGTATAC GTCCCACAA AAT TTGTGGGAC TCTTCCTTCTACAGA CpB0903 990430 - 989069 - | hypothetical protein CpB0904 990695 - 991348 + | hypothetical protein TERM 970 991366 - 991413 + F 71 -3.3 -5.19879 | opp_overlap 991369 991373, overlap 991368 991401 TTCTAAAGCTCTCTA CAACTAAGCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGCCCAGAAG TTTTTCTCTTTGGCC TERM 971 991410 - 991369 - f 91 -12.4 -3.30635 | opp_overlap 991368 991366 991401, overlap 991373 TAAAGCTCTCTACAA CTAAGCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGCCCAG AAGTTTTTCTCTTTG TERM 972 991406 - 991373 - f 90 -11.8 -3.44146 | opp_overlap 991368 991366 991401, overlap 991369 GCTCTCTACAACTAA GCTTCCTTTCCCCA AAACAA TAGGGAAGGGAAGC CCAGAAGTTTTTCTC TERM 973 991583 - 991601 + G 78 -10.4 -3.27476 | TTTACAGTTCCACGG GTTAAAGC TCG GCTTTAAC TTGATGCTTCAAAAT TERM 974 992694 - 992704 + G 71 -3.2 -4.95758 | ATGATTTGGGCCTTA TCTG ACA CAGG TTTTTCTGGTATGGT CpB0905 991467 - 992843 + | D-alanine/glycine transport protein, sodium-dependent CpB0906 992856 - 993308 + | hypothetical protein TERM 975 993335 - 993308 - T 87 -13 -2.81535 | opp_overlap 993311, overlap 993304 993311 TTACGAGAAAAGTTA GAATTTATTCCT CTTC AGGAATAAATTC CTCTCGCTTCTTCCT TERM 976 993311 - 993332 + T 73 -8.9 -3.30854 | opp_overlap 993308 993304 993311 CGAGAAAAGTTAGAA TTTATTCCT CTTC AGGAATAAA TTCCTCTCGCTTCTT TERM 977 993332 - 993311 - T 77 -8.9 -3.543 | opp_overlap 993311, overlap 993308 993304 CGAGAAAAGTTAGAA TTTATTCCT CTTC AGGAATAAA TTCCTCTCGCTTCTT CpB0907 993977 - 993312 - | SET domain-containing protein CpB0908 994762 - 993965 - | putative metal dependent hydrolase TERM 978 994399 - 994383 - G 76 -2.9 -5.34655 | TAATGAAAAATAAAA GCCACAG GAT CTACAGC ATCATGAGGTACATT CpB0909 997184 - 994764 - | DNA translocase SpoIIIE TERM 979 995906 - 995881 - G 72 -6.1 -4.26344 | overlap 995865 ACAGCTTGAGGAAAA GGTGTGGGAAT TTCA ATACCCACAGC AGCTTTCCCCGGAAT TERM 980 996597 - 996577 - G 71 -3.3 -5.03145 | overlap 996580 CAAGTTTGGAAAAAA GAGCAAAAA GCC TTTTTGACC CCGTCTTGAAAGGTT TERM 981 996839 - 996823 - G 73 -7.3 -4.20516 | CGTGTATCTAATAAA GCAGGAA GCG TTCCTAC TGGAGATAACATGGA TERM 982 997139 - 997117 - G 73 -5.6 -4.56642 | overlap 997118 AAAAATAAATATAAA CTGGCTTTAG CTG CTAAAGGCAA AGTCGGAAGACGAGG TERM 983 999421 - 999402 - H 72 -9.2 -2.65808 | opp_overlap 999417, overlap 999398 999399 AGTCGTAACAAGGTA GCCCTACC GGAA GGTGGGGC TGGATCACCTCCTTT TERM 984 999467 - 999451 - H 79 -9.5 -3.5002 | overlap 999447 999466 TTTAAGGACAAGGAA GGTTGTT TTT AACAACC CGACTAGGTTGGGCA TERM 985 999794 - 999812 + H 79 -10.4 -2.81207 | overlap 999793 999796 CGAATGGGGCAACCC GATAGACT AAT AGTCTATC ATTATATGTTGAATA TERM 986 999953 - 999937 - H 73 -8.1 -3.66803 | opp_overlap 999936 GGGGAACAGCCTAAA CCATATT TTT AATATGG GGTTGTAGGGTCGAT TERM 987 1000195 - 1000183 - H 78 -7.7 -4.2354 | GAAAGGTGAAAAGAA CCCTT GTT AAGGG AGTGAAATAGAACCT TERM 988 1002874 - 1002894 + H 100 -8.4 -6.21477 | opp_overlap 1002874 TTAAGAATTTCAAAA GAGGATAA TTTTT TTATCCTC TTTTTTTTTGCTGTT TERM 989 1002894 - 1002874 - H 81 -8.4 -4.24123 | opp_overlap 1002874 TTAAGAATTTCAAAA GAGGATAA TTTTT TTATCCTC TTTTTTTTTGCTGTT CpB0910 1003107 - 1003535 + | hypothetical protein CpB0911 1003591 - 1004730 + | hypothetical protein CpB0912 1006188 - 1004893 - | Na(+)-translocating NADH-quinone reductase subunit F TERM 990 1006306 - 1006285 - R 100 -13.1 -4.69324 | ACAATAAATAAGAAA TCCCACGAT TTTA ATCGTGGGA TGAAAGTCTCAAAAG yajC 1006682 - 1006329 - | preprotein translocase subunit YajC CpB0914 1007958 - 1006753 - | protein Hom1 TERM 991 1007859 - 1007869 + g 79 -3.2 -5.27335 | overlap 1007856 CGAATAACTGATGAA GGAG TTC TTCC TTTTTCTTTAAGGAG TERM 992 1008203 - 1008176 - g 100 -8.5 -5.24129 | TTTGGGCATAAAAAA GAGGATGAGTA GAAAAT TACCCACCCTC TAAACGAAATCAAGC CpB0915 1008045 - 1008206 + | hypothetical protein CpB0916 1008572 - 1008228 - | histone H1-like protein TERM 993 1008304 - 1008343 + g 84 -3.7 -5.41746 | GATGCAGGTTTAGAA GCTTTGACTGCTTT-GCTA GTTT TAGCTGCAGCAG-CAGAGC TTTTTTTAGGGGCTT TERM 994 1008540 - 1008566 + g 75 -5.8 -4.59251 | opp_overlap 1008540, overlap 1008542 CTCTGCTTTAGCTAA GTCGTGTTGGAT GCT ATCCAGCAGGTC TTTCATTTTTTTTGC CpB0917 1008777 - 1008995 + | hypothetical protein TERM 995 1009467 - 1009480 + G 79 -6.7 -4.64766 | opp_overlap 1009462, overlap 1009462 CTGTCACGAATCTTT GCAAG ATCA CTTGC TTTTTGAGCTCTACA TERM 996 1009672 - 1009658 - g 78 -2.2 -5.56264 | overlap 1009659 1009660 TGCAAATAGAAAAAA CTTTTT TGC AAAAAA CACTGCTTGCTTTGC TERM 997 1010058 - 1010070 + G 82 -4.8 -5.28176 | TGAGCATCCCTATTT CCCA GAATA TGGG TTTTTTCTAGGTGCA CpB0919 1009015 - 1011483 + | putative chltr phosphoprotein CpB0918 1012746 - 1011439 - | protoporphyrinogen oxidase TERM 998 1011881 - 1011865 - G 79 -8 -4.27316 | TTTGGGAAGCGAAAA GTTGGC GTGAT GCCAAC CTAAGCTGATGCTAG TERM 999 1012624 - 1012644 + g 86 -9.7 -4.03234 | opp_overlap 1012627, overlap 1012627 GGATTCCGTGCGGAC GAAGCCTCC TGC GTAGGCTTC TTTATCTAAAACAAG CpB0920 1014158 - 1012782 - | coproporphyrinogen III oxidase hemE 1015128 - 1014139 - | uroporphyrinogen decarboxylase TERM 1000 1014567 - 1014555 - G 100 -9.1 -4.74706 | opp_overlap 1014565, overlap 1014566 TCGAAGATTCAAAAA GCTGC ACA GCAGC AGCTCCTGCATCCAT TERM 1001 1014908 - 1014896 - G 79 -7.7 -4.35116 | overlap 1014899 TAGGTCACAGCAAAA CCATC CAA GATGG ATAGGATATCAGCAA CpB0922 1018396 - 1015139 - | transcription-repair coupling factor TERM 1002 1015566 - 1015576 + gr 100 -6.8 -5.5943 | opp_overlap 1015566 GTGTGTTTTTTTAAA GCTG AAA CAGC TTTTTTTAGTAATTT TERM 1003 1015741 - 1015722 - GR 80 -9.3 -3.64703 | opp_overlap 1015706 TCCTGCTTATTTAAA GCAGCGA GTCGCT TCGCTGC TGGCCCAGACAACCT TERM 1004 1016426 - 1016437 + gr 70 -4.4 -4.70879 | TCCTGAAGCTACTTG CTCA CAGA TGAG TTTTTGCACTTTGGC TERM 1005 1017125 - 1017103 - GR 78 -4.3 -5.10208 | gap 1, opp_overlap 1017111, overlap 1017105 GAATCGGAACAAAAA CTTCTTCAGT AGTC ACTGAA-AAG TGAGTGCGTTGTTTT alaS 1020984 - 1018366 - | alanyl-tRNA synthetase TERM 1006 1018576 - 1018598 + gH 81 -9.3 -3.88001 | AATATATTTCCCATT TTTCTCTGT TGTCC ACAGAGAAA TTAGTTTTTCTGGAA TERM 1007 1018736 - 1018748 + gH 73 -7.7 -3.82519 | overlap 1018734 AACTTGTCTAATTTT GTCTG AAT CAGAC TGTTTTCTAACTCAT TERM 1008 1020692 - 1020647 - GH 70 -5.6 -4.38876 | gap 2, opp_overlap 1020659 TTAAAAACAGATAAA GAGACTTCCC-AA-GCAAAGGC AATC GCCTCTGCTTTAAAGTAGTCTC CGAAAGAAAAATTCC TERM 1009 1020659 - 1020678 + gH 71 -7.8 -3.63068 | opp_overlap 1020647 AAAGAGACTTCCCAA GCAAAGGC AATC GCCTCTGC TTTAAAGTAGTCTCC CpB0924 1021163 - 1023214 + | transketolase CpB0925 1024089 - 1023208 - | AMP nucleosidase TERM 1010 1023520 - 1023510 - G 73 -5.4 -4.7254 | opp_overlap 1023510 ATCCGGCAGCAAAAA GTGT CGC ACAC TCCATTTCAGCGGAT CpB0926 1024311 - 1024883 + | elongation factor P TERM 1011 1024897 - 1024908 + F 71 -3 -5.05782 | AGATTGCCGTTGTAG GAAA AGTA TTTC TTTTTTACAGTGCGT TERM 1012 1025030 - 1025016 - g 70 -5.7 -4.25256 | opp_overlap 1025015 1025026, overlap 1025026 TCTTGATGAAAAGAA CAAGC GCAAA GCTTG GGTTGCTAAGCTTGT CpB0927 1024918 - 1025148 + | hypothetical protein cpdA 1026060 - 1025173 - | 3,5'-cyclic-nucleotide phosphodiesterase CpB0929 1027783 - 1026224 - | chaperonin HSP60 TERM 1013 1026986 - 1027003 + g 79 -8.5 -4.15044 | GGTGACTACAGTTAC TTGCAAG AGCC CTTGCAA TTTGTTAACAACAAG CpB0930 1027937 - 1028152 + | hypothetical protein TERM 1014 1028909 - 1028919 + G 85 -4 -5.45802 | TGTTCTCCTACTGCC GAAA AAT TTTC TTTTTCTTTTAACGA CpB0931 1028198 - 1029541 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase mraY 1029558 - 1030607 + | phospho-N-acetylmuramoyl-pentapeptide-transferase murD 1030610 - 1031863 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase lytE 1031866 - 1032567 + | cell wall hydrolase CpB0935 1032586 - 1033743 + | stage V sporulation protein E murG 1033652 - 1034722 + | N-acetylglucosaminyl transferase TERM 1015 1034699 - 1034716 + F 75 -8.5 -3.45536 | ACAAAAACATTCCAT GCATTCA TTTG TGAATGC TTATAGGTTCATTAT TERM 1016 1035755 - 1035773 + G 78 -7.4 -4.57073 | CGTGATGCTGTGGGT TTGCGAAG AGT CATCGCAA TTTTTCAACCACATC TERM 1017 1035991 - 1035975 - g 71 -9.5 -2.91264 | TTCCCCATGGAGACA TCGTAGA TTA TCTACGA AACTACATTCGCATT CpB0937 1034732 - 1037161 + | UDP-N-acetylmuramate--alanine ligase TERM 1018 1037197 - 1037170 - T 100 -7.9 -5.94214 | opp_overlap 1037170 AAGATAATAAAAAAA CTAGAGATCTT TTTATT AAAATCTCTAG TTTTTACATGTAAAC TERM 1019 1037170 - 1037197 + T 74 -5.7 -4.70659 | opp_overlap 1037170 AAGATAATAAAAAAA CTAGAGATCTT TTTATT AAAATCTCTAG TTTTTACATGTAAAC CpB0938 1037813 - 1037235 - | hypothetical protein TERM 1020 1037712 - 1037701 - GT 95 -3 -6.04953 | opp_overlap 1037701 ATAGAAAGAAAAAAA CATA ACTC TATG TTTTTAAAGTTCCTG cutA1 1038103 - 1037765 - | divalent cation tolerance protein CpB0940 1038885 - 1038100 - | hypothetical protein TERM 1021 1038424 - 1038408 - G 82 -2.3 -5.71712 | CTTGAGAGAAAAAAA TCTGA GGGAGAT TCAGA GAGGGGAAGTACGGT CpB0941 1038945 - 1039292 + | sigma-F 5-region regulatory protein SpoIIAA miaA 1039302 - 1040330 + | tRNA delta(2)-isopentenylpyrophosphate transferase CpB0942 1041366 - 1040305 - | hypothetical protein TERM 1022 1040787 - 1040773 - G 78 -10 -3.53012 | opp_overlap 1040769 1040773 TGCTGTTGTGCGAAA GCCCAT GAG ATGGGC TAACTTATGTAGATT TERM 1023 1040773 - 1040787 + g 71 -10 -2.63823 | opp_overlap 1040773, overlap 1040769 TGCTGTTGTGCGAAA GCCCAT GAG ATGGGC TAACTTATGTAGATT TERM 1024 1040805 - 1040822 + g 95 -5.5 -5.75342 | overlap 1040807 ACTTATGTAGATTGA TCCAGCC CCCA GGCTGCA TTTTTTTTGGAGAGA CpB0944 1041452 - 1043113 + | hypothetical protein CpB0945 1043110 - 1043298 + | hypothetical protein CpB0946 1043349 - 1043750 + | hypothetical protein TERM 1025 1043884 - 1043904 + G 70 -7.7 -3.63968 | overlap 1043879 AAGGGAATAATCTGG TTGTTCTAG ATG TTAGAACAA TTTCGGAATTTACCG CpB0947 1043811 - 1044170 + | Iojap CpB0948 1044187 - 1045437 + | 3-oxoacyl-(acyl carrier protein) synthase II CpB0949 1045440 - 1045892 + | diadenosine tetraphosphatase TERM 1026 1045889 - 1045929 + T 87 -11.3 -3.17392 | opp_overlap 1045903, overlap 1045894 CTATCTTTTCTCTTC TTGATTTTCAAGGAGAGGG AAC CCCTCTCCTTAGACATTAA TTCACTTCAGCAGTG TERM 1027 1045894 - 1045925 + T 87 -11 -3.4052 | gap 1, opp_overlap 1045903, overlap 1045889 TTTTCTCTTCTTGAT TTTC-AAGGAGAGGG AAC CCCTCTCCTTAGACA TTAATTCACTTCAGC TERM 1028 1045915 - 1045903 - T 72 -9.1 -2.72344 | opp_overlap 1045894 1045889 CTTGATTTTCAAGGA GAGGG AAC CCCTC TCCTTAGACATTAAT CpB0950 1046573 - 1045926 - | inorganic pyrophosphatase TERM 1029 1046245 - 1046259 + g 84 -2.8 -5.71712 | opp_overlap 1046245, overlap 1046247 GCTTGAAGTAAAATA TTTCCA TGA TGGATA TTTTTTTCTGTAAGA TERM 1030 1046247 - 1046257 + g 70 -5.4 -4.50122 | opp_overlap 1046245, overlap 1046245 TTGAAGTAAAATATT TCCA TGA TGGA TATTTTTTTCTGTAA TERM 1031 1047375 - 1047350 - g 70 -7.5 -3.86897 | opp_overlap 1047352 CTGATGTTTTAGAAA GAGCCGTTCAG GATG CTGCAAGGCTC TATGGGGCTACGATT CpB0951 1046728 - 1047783 + | leucine dehydrogenase CpB0952 1048755 - 1047778 - | bisphosphonucleoside 3(2')-phosphohydrolase-like protein CpB0953 1048885 - 1049646 + | 2-acylglycerophosphoethanolamine acyl transferase/acyl carrier TERM 1032 1050922 - 1050941 + G 71 -5 -4.58395 | GAGATTTGGGTCATA TAGGTCCT AGCG GGGATCTA TTTTTAGAAGGTAGG CpB0954 1049664 - 1051280 + | long chain fatty acid--[acyl-carrier-protein] ligase TERM 1033 1051460 - 1051472 + GT 72 -9.1 -2.62653 | opp_overlap 1051459 1051460, overlap 1051459 1051467 1051468 TTTCCTCATGAGAAG CTCGG GAT CCGAG GTTCTCGGCTTATGG TERM 1034 1051472 - 1051460 - gT 72 -9.1 -2.64099 | opp_overlap 1051460 1051459 1051467 1051468, overlap 1051459 TTTCCTCATGAGAAG CTCGG GAT CCGAG GTTCTCGGCTTATGG TERM 1035 1051468 - 1051480 + GT 72 -9.1 -2.64218 | opp_overlap 1051460 1051459, overlap 1051460 1051459 1051467 TGAGAAGCTCGGGAT CCGAG GTT CTCGG CTTATGGTAGGGCCT priA 1054624 - 1052375 - | primosome assembly protein PriA CpB0956 1051334 - 1052446 + | 8-amino-7-oxononanoate synthase CpB0957 1055250 - 1054573 - | hypothetical protein TERM 1036 1055318 - 1055335 + H 71 -5.7 -4.4767 | opp_overlap 1055321 AGAGCTCTCTGTGGA TAAGAAT TTCT ATTCTTA TTTTATCCTAAATCA CpB0958 1055410 - 1055910 + | putative thioredoxin disulfide isomerase CpB0959 1057159 - 1056017 - | hypothetical protein TERM 1037 1056187 - 1056197 + g 75 -5.4 -4.78848 | overlap 1056184 GCTCTAGAAAAGGTG TTGC TAC GCAA TTTTCTCTTTCGAAG CpB0960 1058331 - 1057231 - | hypothetical protein TERM 1038 1058556 - 1058573 + r 78 -6.9 -4.29302 | overlap 1058558 1058562 GCTTTTTCAAAATTG GTGTGGC AAGA GCCACTC TTGTTTTGCTGTCGA TERM 1039 1058558 - 1058571 + r 75 -8.1 -3.74088 | overlap 1058556 1058562 TTTTTCAAAATTGGT GTGGC AAGA GCCAC TCTTGTTTTGCTGTC CpB0961 1059642 - 1058533 - | hypothetical protein TERM 1040 1058562 - 1058576 + g 82 -8.6 -4.3586 | overlap 1058558 1058556 TCAAAATTGGTGTGG CAAGAG CCA CTCTTG TTTTGCTGTCGATGG TERM 1041 1059140 - 1059121 - G 79 -10.8 -3.14211 | opp_overlap 1059130, overlap 1059130 ATTGGCCCCTATCAA CTTGGCAA ATCT TTGCCAAG AATCAAAGATCTCCT TERM 1042 1059770 - 1059789 + G 87 -6.4 -5.09762 | overlap 1059772 CAGGCTTCAATGTCT GTCCACAA AAGT TTGTGGTC TTTTCTTTATTGCCA TERM 1043 1059772 - 1059787 + G 76 -7.6 -4.16668 | overlap 1059770 GGCTTCAATGTCTGT CCACAA AAGT TTGTGG TCTTTTCTTTATTGC CpB0962 1059728 - 1059880 + | hypothetical protein CpB0963 1060243 - 1060683 + | hypothetical protein CpB0964 1060898 - 1060719 - | hypothetical protein TERM 1044 1060914 - 1060932 + H 73 -9 -3.26719 | overlap 1060917 CTTCTGGCTATACGG GAATGTTT TTC AAACATTC TTAAGTCTTTGTCCG TERM 1045 1062261 - 1062251 - g 73 -5.4 -4.63218 | opp_overlap 1062257 1062259 1062260 TCGCTTTGAAGAAAA TCCT AGT AGGA GGAGCTCCTCGTATT lysS 1061488 - 1063071 + | lysyl-tRNA synthetase cysS 1064492 - 1063068 - | cysteinyl-tRNA synthetase TERM 1046 1064503 - 1064517 + rH 76 -6.4 -4.55093 | opp_overlap 1064495 GCCATAACTGTATCA CTCTTG ACT CAGGAG TTTGTTGTTATATAG TERM 1047 1065039 - 1065074 + Gr 82 -4.8 -5.37345 | gap 1, opp_overlap 1065043 1065045, overlap 1065042 1065045 ATCAGGAGGCTTTGC AAAAGAGCAA-GGAAGC AGA GCTTCCTTTGCTTGTTA TTTTTTCTGGTTCCG TERM 1048 1065042 - 1065071 + Gr 80 -6.5 -4.75967 | gap 1, opp_overlap 1065043 1065045, overlap 1065039 1065045 AGGAGGCTTTGCAAA AGAGCAA-GGAAGC AGA GCTTCCTTTGCTTG TTATTTTTTCTGGTT TERM 1049 1065070 - 1065043 - gR 76 -7.8 -4.08216 | gap 1, opp_overlap 1065042 1065039 1065045, overlap 1065045 GGAGGCTTTGCAAAA GAGCAA-GGAAGC AGA GCTTCCTTTGCTT GTTATTTTTTCTGGT TERM 1050 1065068 - 1065045 - gR 86 -10.4 -3.63922 | gap 1, opp_overlap 1065042 1065039 1065045, overlap 1065043 AGGCTTTGCAAAAGA GCAA-GGAAGC AGA GCTTCCTTTGC TTGTTATTTTTTCTG TERM 1051 1065045 - 1065068 + Gr 100 -10.4 -4.44307 | gap 1, opp_overlap 1065045 1065043, overlap 1065042 1065039 AGGCTTTGCAAAAGA GCAA-GGAAGC AGA GCTTCCTTTGC TTGTTATTTTTTCTG rnpA 1066292 - 1065873 - | ribonuclease P CpB0968 1064885 - 1065931 + | putative disulfide bond isomerase rpmH 1066441 - 1066304 - | 50S ribosomal protein L34 rpmJ 1066686 - 1066823 + | 50S ribosomal protein L36 rpsN 1066846 - 1067151 + | 30S ribosomal protein S14 CpB0972 1067672 - 1067196 - | hypothetical protein CpB0973 1068078 - 1068548 + | hypothetical protein uvrC 1070362 - 1068551 - | excinuclease ABC subunit C mutS 1072851 - 1070365 - | DNA mismatch repair protein TERM 1052 1070490 - 1070476 - G 70 -7.1 -3.75418 | CACACAAAGGGGAAA GCCAG CAAGC CTGGC GACATGAATGCCGAA TERM 1053 1070558 - 1070547 - G 78 -5.8 -4.84311 | opp_overlap 1070546 1070547 TCTCATATAAGAAAA CAGG CTGC CCTG CTTTATCTTTAACTC TERM 1054 1071794 - 1071812 + g 73 -5.3 -4.64361 | opp_overlap 1071794 AGTCGTTCGATATCA CGTACTT GACAA AGGTACG TTTTGATATTTTTTC TERM 1055 1072540 - 1072556 + g 89 -3.5 -5.62219 | opp_overlap 1072538, overlap 1072541 AAATCTCTGAATATC CCGGGCC ATG GGACCGA TTTTTTTACTCTCTT CpB0976 1073105 - 1072944 - | hypothetical protein TERM 1056 1073881 - 1073869 - g 74 -7.7 -4.03219 | opp_overlap 1073868 1073869 ATCTCACAAGAACAA CTGCA TAC TGCAG GGTTTTTTGGGAATA TERM 1057 1073963 - 1073976 + G 70 -5.3 -4.57569 | GACATACCATTGGAT TTTCC GCTA GGAAA TTTTTAGAAAACTCC TERM 1058 1074693 - 1074703 + G 79 -3.2 -5.28176 | GGAAACAGATATCTT GCGT TGT ATGC TTTTTTGTGGATCCA dnaG 1073335 - 1075107 + | DNA primase TERM 1059 1075116 - 1075130 + F 72 -5.8 -4.36508 | TCCTTAACCCAGCTC TTCTTT TGT AAAGAA TTCTTGTTTTTCTAA CpB0978 1075328 - 1075591 + | hypothetical protein CpB0979 1075862 - 1076350 + | hypothetical protein CpB0980 1076420 - 1077013 + | hypothetical protein TERM 1060 1077071 - 1077036 - T 100 -22.8 -4.63218 | opp_overlap 1077036 1077040, overlap 1077021 1077040 CTTCCCTTAATAAAA GAAAGCGCTCGTAGGA TTCC TCCCACGAGCGCTTTC TTTATCTAAATGTTA TERM 1061 1077036 - 1077071 + T 100 -20.6 -4.08939 | opp_overlap 1077021 1077036 1077040, overlap 1077040 CTTCCCTTAATAAAA GAAAGCGCTCGTAGGA TTCC TCCCACGAGCGCTTTC TTTATCTAAATGTTA TERM 1062 1077067 - 1077040 - T 100 -17.8 -4.87892 | opp_overlap 1077036 1077040, overlap 1077036 CCTTAATAAAAGAAA GCGCTCGTAGGA TTCC TCCCACGAGCGC TTTCTTTATCTAAAT TERM 1063 1077040 - 1077067 + T 100 -15.6 -4.63044 | opp_overlap 1077040 1077036, overlap 1077036 CCTTAATAAAAGAAA GCGCTCGTAGGA TTCC TCCCACGAGCGC TTTCTTTATCTAAAT CpB0981 1080124 - 1077092 - | glycyl-tRNA synthetase CpB0982 1080361 - 1080167 - | hypothetical protein TERM 1064 1081395 - 1081380 - g 75 -3.3 -5.11836 | AGAGCTAAAACAAAA GATTC AGAAAA GAATC ATGAGAGTAAAGATT CpB0984 1080792 - 1081412 + | CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase glgA 1082824 - 1081394 - | glycogen synthase TERM 1065 1081507 - 1081492 - G 80 -9 -3.98173 | TCAAATTCAACCAAA CGTCAG GCTC CTGACG ATACGTCGTTACAGC TERM 1066 1082488 - 1082475 - G 70 -8.1 -3.65812 | overlap 1082476 GCTTCTTGAAGATAA GCTGC AGCT GCAGC TGCAAAAGCAGAGAA CpB0985 1083045 - 1083236 + | hypothetical protein CpB0986 1083279 - 1083836 + | 50S ribosomal protein L25/general stress protein Ctc TERM 1067 1083984 - 1083998 + G 73 -8.6 -3.6279 | opp_overlap 1083986 ATGCCATGCTTTAAT GACTCT CGT AGAGTC TTCTTCAGGGCCTTT CpB0987 1083838 - 1084380 + | peptidyl-tRNA hydrolase rpsF 1084472 - 1084810 + | 30S ribosomal protein S6 rpsR 1084828 - 1085076 + | 30S ribosomal protein S18 TERM 1068 1085230 - 1085203 - g 82 -3.4 -5.45652 | gap 1, opp_overlap 1085217 1085218 ATCCCTAAGAAAAAA GCAGTGATTGCTG GTG CAGGAA-CTCTGC GTTTACAAGCTAAAC TERM 1069 1085537 - 1085503 - g 79 -7.9 -4.29139 | TTAAAGCTAAAAGAA GAAGTAACCGCAACC TTATT GGTCGAAGTTACCTC TGACAATGAATACGT rplI 1085092 - 1085601 + | 50S ribosomal protein L9 TERM 1070 1086020 - 1086033 + G 100 -2.4 -6.59152 | overlap 1086014 TGGGCTCGAGAAATC GGAA GCGATG TTCC TTTTTTTTTTCTTCA CpB0991 1085636 - 1086061 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 1071 1086259 - 1086241 - gf 88 -7.5 -4.89339 | AATGATCTAGAAAAA TCCGTAT TTCGT ATACGGA CAGACTTGAAAAATA CpB0992 1086004 - 1086528 + | putative kinase TERM 1072 1086722 - 1086735 + F 87 -2.4 -6.09196 | ACCCTCACATTCTCT TCCT ACTTAA AGGA TTTTTTTATTTTAAA CpB0993 1086910 - 1088262 + | hypothetical protein TERM 1073 1088311 - 1088271 - T 100 -18.7 -3.63425 | opp_overlap 1088276 1088280, overlap 1088276 1088280 CAGGTAAACTAAAGA TAAAACAAAGGCATAAGAT ATG ATCTTATGCCTTTGTTTTT AAGAGGTCTTCTGAG TERM 1074 1088306 - 1088276 - T 100 -18.6 -4.85894 | opp_overlap 1088276 1088280, overlap 1088271 1088280 AAACTAAAGATAAAA CAAAGGCATAAGAT ATG ATCTTATGCCTTTG TTTTTAAGAGGTCTT TERM 1075 1088276 - 1088306 + T 100 -18.6 -4.59511 | opp_overlap 1088276 1088271 1088280, overlap 1088280 AAACTAAAGATAAAA CAAAGGCATAAGAT ATG ATCTTATGCCTTTG TTTTTAAGAGGTCTT TERM 1076 1088302 - 1088280 - T 100 -13.6 -4.91778 | opp_overlap 1088276 1088280, overlap 1088276 1088271 TAAAGATAAAACAAA GGCATAAGAT ATG ATCTTATGCC TTTGTTTTTAAGAGG TERM 1077 1088280 - 1088302 + T 100 -13.6 -4.85782 | opp_overlap 1088280 1088276 1088271, overlap 1088276 TAAAGATAAAACAAA GGCATAAGAT ATG ATCTTATGCC TTTGTTTTTAAGAGG CpB0994 1091138 - 1088310 - | protein-degrading enzyme TERM 1078 1089918 - 1089902 - G 78 -9.5 -3.59946 | TGCCCAAGGATACAA TCTGCTT ACA AAGCAGA TCAAACAATGGACTT TERM 1079 1090637 - 1090647 + g 73 -5.4 -4.60797 | CAGCGAATTCTTGAT GTAC TGC GTAC TTTTCTCTATCAAGA CpB0995 1092135 - 1091140 - | glycerol-3-phosphate acyltransferase TERM 1080 1092072 - 1092060 - G 77 -6.3 -4.73388 | overlap 1092047 AATTCTGATGAAAAA CAGAA AAT TTCTG ATATAAAGGCTCTGG CpB0996 1093693 - 1092146 - | cytosolic axial filament protein cafA and ribonuclease E TERM 1081 1093242 - 1093228 - G 84 -10 -3.86822 | opp_overlap 1093227 1093226 1093230 CAATTTTTCGAGAAA CACCTC GGT GAGGTG AGTTTGGTAAAAGTA CpB0997 1093994 - 1094455 + | hypothetical protein rpmF 1094468 - 1094650 + | 50S ribosomal protein L32 TERM 1082 1094697 - 1094714 + G 76 -7.7 -4.08557 | GCATAGATTTAATGG GAGGGGA CCAT TCTCCTC TTGTTGTTTGGCAAG CpB0999 1094666 - 1095628 + | putative glycerol-3-phosphate acyltransferase PlsX CpB1000 1095814 - 1100577 + | outer membrane protein 11 TERM 1083 1100627 - 1100609 - T 100 -11.8 -5.95166 | opp_overlap 1100609 TTCAATCAAAAAAAA GGGTTACT TTT AGTAACCC TTTTTTATTTCTCTT TERM 1084 1100609 - 1100627 + T 100 -11.8 -5.7827 | opp_overlap 1100609 TTCAATCAAAAAAAA GGGTTACT TTT AGTAACCC TTTTTTATTTCTCTT CpB1001 1102102 - 1100648 - | hypothetical protein TERM 1085 1101686 - 1101676 - G 73 -5.4 -4.59773 | overlap 1101680 TGTTATCCTCAAAAA GCAA CGC TTGC AAAGCGAAAATGAAG TERM 1086 1101692 - 1101680 - G 72 -7.7 -3.81256 | overlap 1101676 ATCCTCAAAAAGCAA CGCTT GCA AAGCG AAAATGAAGGGTTGA TERM 1087 1101970 - 1101986 + g 77 -6.5 -4.63932 | overlap 1101959 1101971 GAGCCACGTTGGTTA GGCGTGT TTG ACACGCA TTTTCTTCCAAGATA TERM 1088 1101971 - 1101985 + g 76 -10 -3.37877 | overlap 1101959 1101970 AGCCACGTTGGTTAG GCGTGT TTG ACACGC ATTTTCTTCCAAGAT TERM 1089 1102156 - 1102174 + r 72 -2.5 -5.27938 | TTATACTTTCTAAGA TTGATTG TTATT CAATTAA TTTTTATTTAGAAAT TERM 1090 1102237 - 1102249 + r 71 -6.3 -4.17048 | TATACTTATTTATGA GTTCT TAA AGAAC TTGTTTTAAGAAACC lpxB 1104086 - 1102272 - | lipid-A-disaccharide synthase CpB1003 1105345 - 1104095 - | poly(A) polymerase TERM 1091 1104399 - 1104381 - G 70 -7.6 -3.73072 | AATTGTTCTAGGAAA TTTTTGAT ATA ATCAAAAA CGGATGTCAAAGACA CpB1004 1105862 - 1107238 + | phosphohexosemutase TERM 1092 1108468 - 1108481 + G 71 -6.7 -4.10257 | AAAGGCTTTTACCTC GCAAC TCTT GTTGC TTGTGTTTTTGGGTT CpB1005 1107245 - 1109074 + | D-fructose-6-phosphate amidotransferase TERM 1093 1109244 - 1109256 + G 87 -6.2 -5.08824 | CAGTTCCTGTATTGA CCGC AAAAG GCGG TTTTTTCCCTGCAAC TERM 1094 1109305 - 1109315 + G 75 -8.2 -3.85389 | CTGGCTTTTTTCTAT GGCC TCA GGCC TTTGCCTTCTTGAAG CpB1006 1109162 - 1110352 + | tyrosine-specific transport protein TERM 1095 1110527 - 1110545 + G 71 -2.4 -5.098 | overlap 1110528 CCCTGGGTCTTTATT TTTCTGGA TTA TACAGAAG TTTATTTTCTTTTTG TERM 1096 1111080 - 1111090 + G 70 -5.4 -4.55023 | CATGGTATTTTGGTA TCTG CTG CAGA TTTTCTCATCTTCAG CpB1007 1110403 - 1111119 + | putative transport permease CpB1008 1112060 - 1111128 - | ftsY cell division protein sucC 1112071 - 1113231 + | succinyl-CoA synthetase subunit beta CpB1010 1113245 - 1114126 + | succinyl-CoA synthetase subunit alpha CpB1011 1114378 - 1114548 + | hypothetical protein TERM 1097 1115093 - 1115113 + G 78 -4 -5.1861 | overlap 1115079 GGTAAACGAAACCTT GTGCGT TTACTTCTC ACGCAC TTTTTTAATCCTCCA CpB1012 1114937 - 1115341 + | hypothetical protein TERM 1098 1115746 - 1115720 - f 74 -6.8 -4.39226 | opp_overlap 1115719 1115717 1115720 1115732 1115741, overlap 1115717 1115735 ATAATTATAAAATAA TTTACTTTTTAA TAA TTAAAATGTAAA CTGTTTGCACTTTAA TERM 1099 1115846 - 1115833 - g 74 -9.5 -3.28219 | overlap 1115831 AACTTCACCAGAACA CCGCC TGAT GGCGG CATTAGACCGTTGGT TERM 1100 1116812 - 1116824 + G 75 -3.3 -5.18371 | AGCTCATTCACTATG CGTGG TAA CCAAG TTTTATTTTATACCA CpB1013 1115783 - 1116889 + | hypothetical protein CpB1014 1117072 - 1118106 + | hypothetical protein CpB1015 1118366 - 1119397 + | hypothetical protein TERM 1101 1121049 - 1121031 - g 73 -2.5 -5.10064 | gap 1, overlap 1121032 1121034 GTGAATAGACAAAAA GTATCTTC GATT GAAGAT-C TGAATAGAACGTTAA htrA 1119696 - 1121147 + | serine protease DO TERM 1102 1121208 - 1121181 - T 71 -7.8 -3.5511 | opp_overlap 1121182 1121185, overlap 1121179 1121182 1121185 TTTGATTCATAAAGA GGAATGAAGAGA GTTC TCTCTTCACTCT TTTATTTTAGGAAGC TERM 1103 1121207 - 1121182 - T 83 -11.3 -2.72745 | opp_overlap 1121182 1121185, overlap 1121181 1121179 1121185 TTGATTCATAAAGAG GAATGAAGAGA GTTC TCTCTTCACTC TTTTATTTTAGGAAG TERM 1104 1121182 - 1121207 + T 100 -9.1 -5.07652 | opp_overlap 1121181 1121179 1121182 1121185, overlap 1121185 TTGATTCATAAAGAG GAATGAAGAGA GTTC TCTCTTCACTC TTTTATTTTAGGAAG TERM 1105 1121204 - 1121185 - T 79 -9.4 -3.50737 | opp_overlap 1121182 1121185, overlap 1121182 1121181 1121179 ATTCATAAAGAGGAA TGAAGAGA GTTC TCTCTTCA CTCTTTTATTTTAGG TERM 1106 1121185 - 1121204 + T 74 -9.4 -3.08754 | opp_overlap 1121185 1121182 1121181 1121179, overlap 1121182 ATTCATAAAGAGGAA TGAAGAGA GTTC TCTCTTCA CTCTTTTATTTTAGG CpB1017 1122683 - 1121202 - | hypothetical protein TERM 1107 1123123 - 1123141 + G 86 -10.4 -3.90112 | ACGCCGTGTTTCATC CTTTGCTT ACC AAGCAAAG TTTCCTTCAAGAGGC TERM 1108 1125054 - 1125078 + G 74 -10.1 -3.15544 | opp_overlap 1125054 1125061, overlap 1125061 CCAAGTATAAACTTA TATGTAACCTC TCG GGGGTTGCATA TTCCTGCACGTGCAG TERM 1109 1125415 - 1125440 + G 82 -8.3 -4.4009 | gap 1 TGGATATGCCCGTAG CGCCA-GGAAGC CGT GCTTCCGTAGCG TTTTATAGGCTAAAA CpB1018 1122732 - 1125656 + | putative zinc metalloproteinase CpB1019 1126895 - 1125660 - | hypothetical protein CpB1020 1127701 - 1126904 - | CDP-diacylglycerol-serine O-phosphatidyltransferase TERM 1110 1128726 - 1128713 - gH 73 -8.1 -3.64466 | ATTTTATATAGAGAA GCTCG TGCA CGAGC CCGTGCTAATAAAGA TERM 1111 1131158 - 1131138 - gH 75 -9.7 -2.57916 | overlap 1131137 TGAAAAATAAATCAG CGTCCACAA GTA TTGTGGTCG AAAGAAAAACAACCC CpB1021 1128080 - 1131214 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1112 1131803 - 1131833 + GF 80 -7 -4.51699 | overlap 1131794 1131804 TAGTAGGATACTATA TCATTATGGAAGGA ATC TTCTTCTATAGTGG TTTTGTAATGATTCT TERM 1113 1131804 - 1131832 + GF 70 -8.3 -3.29935 | overlap 1131803 AGTAGGATACTATAT CATTATGGAAGGA ATC TTCTTCTATAGTG GTTTTGTAATGATTC TERM 1114 1131990 - 1131969 - gf 70 -2.9 -5.03961 | overlap 1131970 1131971 AATTAAAGAAGAAAA CCCCGAAGT TTGG ACTACGGAA CTACAAGAAGAAATC TERM 1115 1132234 - 1132218 - gf 77 -3.7 -5.09762 | opp_overlap 1132213, overlap 1132213 1132221 1132232 1132233 TCTGAATAAAGAAAA GAATTTC TTT GAAACCC GGGTTACCGAATACC CpB1022 1131178 - 1132275 + | ribonucleotide-diphosphate reductase subunit beta TERM 1116 1132298 - 1132330 + F 100 -10.7 -4.70879 | overlap 1132300 TCTTTTTCAAGGGAG TTTTGAGAGATGGTC TTA GATCGTCTCTCAGGA TTTTTCAGCTTTCCC TERM 1117 1132300 - 1132328 + F 81 -11.1 -2.6436 | overlap 1132298 TTTTTCAAGGGAGTT TTGAGAGATGGTC TTA GATCGTCTCTCAG GATTTTTCAGCTTTC TERM 1118 1132652 - 1132666 + G 93 -10 -4.26903 | TCAAGTACTTTGGAT CGCTGT GGA ACAGCG TTTTGATAGGGTAAG trmB 1132425 - 1133099 + | tRNA (guanine-N(7))-methyltransferase TERM 1119 1133755 - 1133769 + G 90 -4.2 -5.61881 | ATGTAGCGAATCGGT GTCGAG CCC CTAGAC TTTTTATTTTTCAGA CpB1025 1133217 - 1133819 + | putative rRNA methylase murB 1134669 - 1133773 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1120 1134310 - 1134300 - G 82 -6.8 -4.87665 | CTGCATTCATAAAAA TGGC CCC GCCA ACCGACCCAGGGATG nusB 1135109 - 1134714 - | transcription antitermination protein NusB CpB1027 1135679 - 1135494 - | hypothetical protein TERM 1121 1135863 - 1135846 - g 72 -6.3 -4.30995 | GTGCGCATAAAAGAA GTTAAGC TTAA GCCTAAC ATAGACGAAAATGAT infC 1135687 - 1136145 + | translation initiation factor IF-3 rpmI 1136123 - 1136317 + | 50S ribosomal protein L35 rplT 1136336 - 1136701 + | 50S ribosomal protein L20 TERM 1122 1136691 - 1136681 - f 79 -5.4 -5.07053 | opp_overlap 1136682, overlap 1136682 AACCAGGCTAAAAAA GCTT TGG AAGC CACAGTTTAGGGATT TERM 1123 1136860 - 1136830 - g 80 -2.6 -5.53991 | overlap 1136834 TACTTAGGAAAAAAA GGAATTTTTCGGAG TTT CTCAGAAAAATTAA AGCAATGTACAGATA TERM 1124 1136856 - 1136834 - g 74 -7.8 -4.06295 | overlap 1136830 TAGGAAAAAAAGGAA TTTTTCGGAG TTT CTCAGAAAAA TTAAAGCAATGTACA TERM 1125 1137283 - 1137259 - g 73 -5.8 -4.56702 | opp_overlap 1137282 CGTGAACTAAAGAAA CAACAACCTC CAATC AAAGTTGTTG CCCCCGGCCTATGTT TERM 1126 1137335 - 1137353 + G 73 -3.8 -4.99035 | overlap 1137336 CACGTTCTCATGTGC TCTTCCAT CAA GTGGAAGC TTTTTATGTAGATCA pheS 1136716 - 1137735 + | phenylalanyl-tRNA synthetase subunit alpha TERM 1127 1137857 - 1137877 + F 79 -8.3 -4.06384 | opp_overlap 1137856 1137852, overlap 1137858 TTCCGATAGAGGAAC TTTGTGGCT AAG AGCCACGAG TTTCTGGTATTCAAC TERM 1128 1137858 - 1137876 + F 77 -9.6 -3.03348 | opp_overlap 1137856 1137852, overlap 1137857 TCCGATAGAGGAACT TTGTGGCT AAG AGCCACGA GTTTCTGGTATTCAA TERM 1129 1139747 - 1139736 - g 88 -3 -5.7946 | TTGCTAAGAAAAAAA TTCT ATTC AGAA ATGATAAGCTTTTGC CpB1033 1138100 - 1140145 + | hypothetical protein CpB1032 1141214 - 1140114 - | hypothetical protein TERM 1130 1140752 - 1140785 + g 93 -13.3 -2.82491 | opp_overlap 1140758, overlap 1140754 1140758 CTGTTTGATCTTTGA GGTAAAGAGCAGGAA TTTT TCCCTGCTCTTTATC TGTCGTGCCTCTATC TERM 1131 1140754 - 1140783 + g 93 -12.3 -2.95774 | opp_overlap 1140758, overlap 1140752 1140758 GTTTGATCTTTGAGG TAAAGAGCAGGAA TTTT TCCCTGCTCTTTA TCTGTCGTGCCTCTA TERM 1132 1140779 - 1140758 - G 84 -10.9 -3.6502 | opp_overlap 1140754 1140752 1140758 GATCTTTGAGGTAAA GAGCAGGAA TTTT TCCCTGCTC TTTATCTGTCGTGCC TERM 1133 1140758 - 1140779 + g 83 -8.7 -4.1523 | opp_overlap 1140758, overlap 1140754 1140752 GATCTTTGAGGTAAA GAGCAGGAA TTTT TCCCTGCTC TTTATCTGTCGTGCC CpB1034 1142291 - 1141218 - | hypothetical protein TERM 1134 1141714 - 1141729 + g 74 -4 -4.98255 | ACAGTATCTTTAGTA GTGTCA GGGA TGATAC TTTTTATAATTCCCA TERM 1135 1141824 - 1141841 + g 80 -3.5 -5.37043 | ATGATCTACAGCGAT GAAAATA CGAT TGTTTTC TTTTTTCTGTAGAGT TERM 1136 1142454 - 1142487 + G 75 -9.1 -3.58518 | opp_overlap 1142454, overlap 1142452 TGATAAGCAATTAGA TCTTTTTTTTGCTTC TTTA GATGTAAAAAAAAGA TATTTGCTTGCTCTT CpB1035 1142410 - 1143369 + | putative p-loop ATPase TERM 1137 1144222 - 1144206 - g 73 -5.1 -4.64766 | CTGAGACGCTAAAAA GAGAACT TAA AGATCTC TACCAGCAAGTGGAA TERM 1138 1145003 - 1145017 + G 71 -3.4 -4.92314 | overlap 1145005 AAGGCTGTATCTGGA GAGGCG GAC CGTCCC TTTTTCTCCATTGCT ftsH 1143557 - 1146289 + | hypothetical protein TERM 1139 1146325 - 1146349 + T 100 -13 -5.72616 | opp_overlap 1146325 1146328 ATTCTGATCCGAAAA GAACCTAGGA AATCC TCCTAGGTTC TTTTTTTGTCTCAAT TERM 1140 1146349 - 1146325 - T 100 -13.7 -4.13945 | opp_overlap 1146325, overlap 1146328 ATTCTGATCCGAAAA GAACCTAGGAA ATC CTCCTAGGTTC TTTTTTTGTCTCAAT TERM 1141 1146346 - 1146328 - T 93 -9.6 -4.19746 | opp_overlap 1146325, overlap 1146325 CTGATCCGAAAAGAA CCTAGGAA ATC CTCCTAGG TTCTTTTTTTGTCTC TERM 1142 1146424 - 1146401 - T 100 -9.7 -5.71983 | opp_overlap 1146401 GTAATCATAAAAAAA GCTAGTCTT TCTAAG AAGACTAGC TTTTCATGTTAAGCG TERM 1143 1146401 - 1146424 + T 100 -10.4 -4.4261 | opp_overlap 1146401 GTAATCATAAAAAAA GCTAGTCTTT CTAA GAAGACTAGC TTTTCATGTTAAGCG TERM 1144 1146486 - 1146503 + T 73 -4.1 -4.90869 | overlap 1146488 TAGAGTTGCTTTATG GCTCAAC TTAA GTTGACC TTTTTCATTGATGCT CpB1037 1148549 - 1146465 - | polynucleotide phosphorylase/polyadenylase TERM 1145 1147148 - 1147124 - G 70 -7.9 -3.65986 | TATCAGAAAGGATAA TCGCTCCTTGA TCA TCAAGGATCAA TCCCATAGCAATTCC TERM 1146 1147200 - 1147181 - G 72 -6.4 -4.39277 | overlap 1147184 CAATAGGAGAAGAAA TAGGGACG CCAG CGTCCATA AGAGCGAGGCAACCG TERM 1147 1148156 - 1148143 - G 70 -8.1 -3.63968 | overlap 1148136 TCTGAAATTGCTAAA GCAGC AGAT GCTGC GCAGATAGCAAGAGG TERM 1148 1148601 - 1148590 - R 79 -4.4 -5.29385 | AAGGGAACGAAAAAA CTAC TTAC GTAG ATTCAATCTTGTAAT rpsO 1148859 - 1148590 - | 30S ribosomal protein S15 CpB1039 1149128 - 1149574 + | putative cytosine deaminase TERM 1149 1149620 - 1149667 + G 71 -7 -4.16284 | opp_overlap 1149629 1149638, overlap 1149621 GGATCAGGAGTCACG ACTTCAGAAGTTAGGAGAGGAA ATTG TTCCTAACCTCACTCCTGAAGA TTTATTGCAACCTAT TERM 1150 1149621 - 1149666 + G 77 -10.5 -3.09288 | opp_overlap 1149629 1149638, overlap 1149620 GATCAGGAGTCACGA CTTCAGAAGTTAGGAGAGGAA ATTG TTCCTAACCTCACTCCTGAAG ATTTATTGCAACCTA CpB1040 1149564 - 1149794 + | hypothetical protein CpB1041 1150498 - 1149791 - | hypothetical protein CpB1042 1151099 - 1150578 - | hypothetical protein CpB1043 1151635 - 1151114 - | hypothetical protein CpB1044 1152078 - 1151689 - | hypothetical protein TERM 1151 1152081 - 1152095 + H 75 -8.6 -3.35597 | opp_overlap 1152080 1152078 1152083, overlap 1152079 TGCTAAAAAGCACAG CACCTA TTT TAGGTG TATTTAGAGGCTCAA CpB1045 1152392 - 1152613 + | hypothetical protein TERM 1152 1152931 - 1152947 + G 78 -5.1 -4.96646 | AAGTATGTTGTTGGA GAGACCT TAT ATGTCTC TTTTTGGTTATCTGG TERM 1153 1153725 - 1153735 + G 70 -5.4 -4.49556 | opp_overlap 1153725, overlap 1153731 1153733 1153733 GCAGTTTCTAGAAAA GAGT GAG ACTC TTTCTTTAGTAAGAA CpB1047 1152631 - 1153929 + | hypothetical protein CpB1046 1154761 - 1153886 - | methionine aminopeptidase CpB1048 1155375 - 1154767 - | hypothetical protein TERM 1154 1155206 - 1155187 - G 81 -9.4 -3.7626 | overlap 1155179 1155197 AGAAATATCCAAGAA TTGGAAGA AGCT TCTTCCAA AAGTAACGAAGAGGA CpB1049 1156009 - 1155602 - | hypothetical protein TERM 1155 1156107 - 1156135 + r 100 -14 -3.44051 | opp_overlap 1156110, overlap 1156110 AGGTAATATTTTTTA GAACAGGGTGTG AGTTA CACACTCTGTTC TTCTGGTAGTGACGG TERM 1156 1156110 - 1156132 + r 83 -9.9 -3.85864 | opp_overlap 1156110, overlap 1156107 TAATATTTTTTAGAA CAGGGTGTG AGTTA CACACTCTG TTCTTCTGGTAGTGA CpB1050 1157896 - 1156121 - | ABC transporter fumC 1157948 - 1159330 + | fumarate hydratase TERM 1157 1159373 - 1159383 + T 74 -5.4 -4.7033 | opp_overlap 1159369, overlap 1159369 TGTATTGTAAAGTAC CGTA GCG TACG TTTTCTCTTCCCTTG CpB1052 1161129 - 1159432 - | sulfate transporter TERM 1158 1161987 - 1162003 + G 70 -5.1 -4.55383 | overlap 1161984 GTTACAATCTGCGCC TCCTAAG AGT CTTTGGA TTATTTTTATAGGTT CpB1053 1161337 - 1162599 + | hypothetical protein CpB1054 1162745 - 1164604 + | hypothetical protein TERM 1159 1164646 - 1164676 + F 93 -10.6 -3.95893 | gap 1, opp_overlap 1164644 TATTGCTTTAATATG CGCGCTTC-CAAT ATAAGC ATTGTGAAGCGCG TTTCATATGTCTTTT ispH 1164709 - 1165641 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 1160 1166215 - 1166251 + GT 75 -8.1 -3.85603 | TGTAGTCATTAGTAT TTCCTTCCCTTTAGA CTCTTTC TCAAGGGGGAAGGAA TGTTTCTTTACTGAA CpB1056 1165601 - 1166335 + | hypothetical protein CpB1057 1167693 - 1166338 - | hypothetical protein TERM 1161 1166687 - 1166670 - G 71 -9.9 -2.7186 | overlap 1166658 1166672 AAATTTCTCCAACCA TAGGAGC AATC GCTCCTA AAATACCTAACGTTG TERM 1162 1167087 - 1167099 + g 75 -3.4 -5.17507 | GTTGCCTTTGATCTC GATG TTCTT CATC TTTTTGTTGGCTTTT TERM 1163 1167702 - 1167720 + G 79 -11 -2.90904 | overlap 1167699 TCAGCATCGCATATT GCTCTCCT GCA GGGAGAGC TACTTGTACTTCTGC CpB1059 1167700 - 1167861 + | hypothetical protein CpB1058 1169382 - 1167850 - | hypothetical protein CpB1060 1169916 - 1169398 - | chaperone SycD CpB1061 1171376 - 1169916 - | hypothetical protein TERM 1164 1170579 - 1170591 + g 71 -4.1 -4.855 | GACTGCCTCTACACC GAGAC CAC GTTTC TTCTTTTTCTTTTTA TERM 1165 1170700 - 1170716 + g 90 -5.8 -5.42975 | AGTTCATGAGATTTT GAGGTC GTCAG GGCCTC TTTTTGTTTCTCTGC TERM 1166 1171498 - 1171479 - H 79 -4.4 -5.2894 | gap 1, opp_overlap 1171479 AAAGAGAAAATAAAA CAAAAATCC AAG GG-TTTTTG TTTGCAAAAAACACT TERM 1167 1171718 - 1171706 - H 77 -4.9 -5.13722 | opp_overlap 1171706, overlap 1171701 CGTAGTAAAATAAAA TCTAA GGG TTAGA TTTTTTAGAGATCTT TERM 1168 1171706 - 1171718 + H 77 -4.9 -5.04987 | opp_overlap 1171701 1171706 CGTAGTAAAATAAAA TCTAA GGG TTAGA TTTTTTAGAGATCTT CpB1062 1171738 - 1172037 + | hypothetical protein xerD 1172933 - 1172034 - | site-specific tyrosine recombinase XerD TERM 1169 1172700 - 1172688 - G 80 -2.7 -5.55695 | TAAGAAGAGAAAAAA TACTT TTA AAGCA ATGAGCCTACGCGCT TERM 1170 1172897 - 1172886 - G 71 -3 -5.04597 | opp_overlap 1172886 ATCTACAGATAAAAA CAAT GAGA ATTG TTCTAGAATCGTTGT TERM 1171 1173905 - 1173926 + G 81 -9.5 -3.74178 | gap 1, opp_overlap 1173904, overlap 1173898 1173907 GCTTTGCAACCGAAC GC-TAGGGAG AAT CTCCCTATGC TTTCAGCTTTGATTA TERM 1172 1173907 - 1173923 + G 79 -10.9 -2.9587 | opp_overlap 1173904, overlap 1173905 1173898 TTTGCAACCGAACGC TAGGGAG AAT CTCCCTA TGCTTTCAGCTTTGA pgi 1173005 - 1174585 + | glucose-6-phosphate isomerase TERM 1173 1174613 - 1174625 + F 77 -4.8 -5.10208 | CCTTTCATAAGTCTA CCTC AGAGA GAGG TTTTTCTTAAGGTTC CpB1065 1174700 - 1174843 + | late stage protein TERM 1174 1176077 - 1176100 + G 73 -8.8 -3.42943 | gap 1, overlap 1176075 1176080 GGCCTCATTTGGTTT GCCCCCGCCTG AGA CAGG-GGGGTC TGTATTTGTATTGCT TERM 1175 1176080 - 1176098 + G 78 -10.2 -3.27129 | overlap 1176077 1176075 CTCATTTGGTTTGCC CCCGCCTG AGA CAGGGGGG TCTGTATTTGTATTG TERM 1176 1176166 - 1176182 + G 72 -9.5 -3.14564 | opp_overlap 1176166 1176170 1176181 AGGTGCTGGCTACAA GGTATCT CAA AGATACC TTCGTGAGAAACTCA TERM 1177 1176182 - 1176166 - g 74 -9.5 -3.28791 | opp_overlap 1176166, overlap 1176170 1176181 AGGTGCTGGCTACAA GGTATCT CAA AGATACC TTCGTGAGAAACTCA CpB1066 1174878 - 1176458 + | hypothetical protein TERM 1178 1176437 - 1176451 + F 89 -11.4 -3.4582 | overlap 1176435 GGTCTGGCATCCGCC GGTCCC TAA GGGACC TCTTTAATCACCTAG CpB1067 1176701 - 1177702 + | malate dehydrogenase CpB1069 1177708 - 1178547 + | hypothetical protein CpB1068 1179586 - 1178540 - | putative D-amino acid dehydrogenase CpB1070 1179762 - 1179577 - | hypothetical protein CpB1071 1181252 - 1179795 - | arginine/ornithine antiporter protein TERM 1179 1180045 - 1180061 + g 77 -3.6 -5.08169 | opp_overlap 1180045 GTTATCATTGCCAAA GGGGCT TTAAT AGACCC TTTTTTAGGATATGT TERM 1180 1181151 - 1181179 + g 89 -11.8 -3.31461 | TGTCGCTGCCATGTT TTGGGGGAGG CTGAAAATC CCTCCCCCAA TTATGGAACTGACTA CpB1072 1181850 - 1181263 - | hypothetical protein CpB1073 1183308 - 1181884 - | hypothetical protein CpB1074 1184217 - 1183429 - | putative outer membrane protein aroDE 1185700 - 1184267 - | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein aroB 1186823 - 1185681 - | 3-dehydroquinate synthase TERM 1181 1185746 - 1185731 - G 70 -7.6 -3.6336 | overlap 1185724 GTATATCATAGAGAA TCTCCA TATT TGGAGA TGCACAATAGGTACC TERM 1182 1186773 - 1186752 - G 86 -10.3 -3.82061 | opp_overlap 1186758, overlap 1186755 GGATATAGAAGAGAA CAACTTCTT CTGG AAGAAGTTG GATATGAGTTTCACT CpB1077 1187899 - 1186820 - | chorismate synthase CpB1078 1188426 - 1187896 - | shikimate kinase CpB1079 1189699 - 1188362 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1183 1188493 - 1188473 - GR 89 -11.3 -3.35371 | TAGAGTCTGAACGAA GTTAGGAAA GGT TTTCCTAAC GCACGCAGTGTTGTG TERM 1184 1188672 - 1188693 + gr 75 -7.3 -4.11501 | overlap 1188682 TTCTGTAGTTCTTCG GTGATTGCA AGAA TGCGATCGC TTTCCTTGTCTTTAG TERM 1185 1188993 - 1188966 - GR 74 -9.2 -3.01001 | gap 1, opp_overlap 1188990, overlap 1188985 GATTTTGAAAGTAGA GCAGCTGCAGC AATGAAA GCTGC-GCTGC TGAAATCACCAGTTA CpB1080 1190441 - 1189770 - | hypothetical protein TERM 1186 1189878 - 1189892 + g 80 -11.4 -2.6732 | opp_overlap 1189874, overlap 1189877 1189872 ATAGCCTAAGAGTTC CTCCCC GTG GGGGAG ATCTTTAAGTTCACG TERM 1187 1190273 - 1190299 + g 85 -2.2 -5.86061 | overlap 1190273 1190274 AAACTTCTTCCTTTA CCTCCGTAGG ATGTTCA CTTGCGGAGA TTTTTTTTGCTCCAC TERM 1188 1190398 - 1190361 - G 73 -9.9 -3.05844 | gap 1, opp_overlap 1190354, overlap 1190387 TTGTGCATGCCAATA GTTGGAAGCTACGATCTC TTT GAGAACGG-GCTCCCAAC GAGAGGCTGTGTGGA CpB1081 1191694 - 1190423 - | adenosylmethionine--8-amino-7-oxononanoate transaminase TERM 1189 1190614 - 1190592 - GR 71 -4.8 -4.61231 | opp_overlap 1190594, overlap 1190595 CTATATTGTGAAAAA TATCCTGTAG CTT CTGCAGGGTA ATCTAGAGCGAGTAC TERM 1190 1191292 - 1191302 + gr 74 -6.8 -4.35682 | opp_overlap 1191291 1191292 TGAGTCCAACAAAAT GGCT CTT AGCC TTGTTTTGATTGTAG TERM 1191 1191323 - 1191333 + gr 71 -5.4 -4.50241 | opp_overlap 1191321 1191323, overlap 1191328 1191330 TTGATTGTAGTAATA TTGC ACA GCAA TTTTCATTGCTATTT CpB1082 1192290 - 1191631 - | dethiobiotin synthase CpB1083 1193417 - 1192269 - | 8-amino-7-oxononanoate synthase TERM 1192 1193233 - 1193259 + g 100 -15.2 -3.28405 | AGCCGAGACCCTGTA GCTCCAAGCGAT TCT ATCGCATGGAGC TTGGTAATGTATTCT CpB1084 1194391 - 1193396 - | biotin synthetase TERM 1193 1194461 - 1194483 + r 100 -13.6 -5.34555 | opp_overlap 1194456 1194461 1194467 TTTAGAGAAAGTCAA TAGGAACCAA TTT TTGGTTCCTA TTTTTTATGGTATGA TERM 1194 1194483 - 1194461 - R 95 -13.6 -3.35695 | opp_overlap 1194461, overlap 1194456 1194467 TTTAGAGAAAGTCAA TAGGAACCAA TTT TTGGTTCCTA TTTTTTATGGTATGA CpB1085 1195296 - 1194598 - | hypothetical protein phhA 1196375 - 1195287 - | phenylalanine 4-monooxygenase TERM 1195 1196181 - 1196169 - GH 71 -4.9 -4.58283 | overlap 1196158 TAAGTTTTTGAAAAA TTCTA AAA TAGAA ATGCATTTGTGTCGA CpB1088 1196264 - 1197046 + | dihydrodipicolinate reductase CpB1087 1197215 - 1197024 - | hypothetical protein TERM 1196 1197524 - 1197534 + G 71 -3.2 -5.08015 | CGAGGAAGTGCAGTC CGAC ATC GTTG TTTCTTTTTTGCCTT CpB1089 1197306 - 1198307 + | aspartate-semialdehyde dehydrogenase TERM 1197 1198578 - 1198596 + G 70 -6 -4.37971 | opp_overlap 1198577, overlap 1198580 CCTATCTACAACATC TGGAGATC TCA GATCTCGA TTTTGCTCGTATTTT TERM 1198 1199309 - 1199299 - g 70 -5.4 -4.52047 | GATGATAGCACAAAA CAAC GTC GTTG GATTTGTAATGGATG TERM 1199 1199591 - 1199573 - g 74 -7.6 -3.9093 | GGTATTATAGAAGAA TTACATAA TGA TTATGTAA AACAAAAAGCTATAG CpB1090 1198295 - 1199617 + | aspartate kinase dapA 1199626 - 1200501 + | dihydrodipicolinate synthase CpB1092 1200662 - 1200973 + | hypothetical protein CpB1093 1201117 - 1201872 + | hypothetical protein TERM 1200 1202251 - 1202298 + G 74 -8 -3.95324 | gap 1 AGAAAGTTTAATGAT TTCTGAAAAGCTTGCGATGACTT TCC AAGTTAGCG-AAGTTATTCAGAA TTGTTATTCACAATG CpB1095 1201853 - 1202404 + | hypothetical protein CpB1094 1202489 - 1202388 - | hypothetical protein TERM 1201 1202465 - 1202436 - G 100 -12.3 -4.62069 | opp_overlap 1202436 CTTGGACTTGAAAAA GCCATTCCTATTT GAAA AAATGGGAATGGC TTTTTTTATAATAGG TERM 1202 1202436 - 1202465 + g 100 -14.5 -5.67063 | opp_overlap 1202436 CTTGGACTTGAAAAA GCCATTCCTATTT GAAA AAATGGGAATGGC TTTTTTTATAATAGG TERM 1203 1204116 - 1204106 - H 71 -6.8 -4.09108 | TCTAATTTAGAGAAA GCCT ATG AGGC TATCGAAGAGAACTA TERM 1204 1205171 - 1205189 + H 83 -8.2 -4.43877 | GAGGACCATACCTAG CATAACTC CAA GAGTTGTG TTTCTTTAAAAATTC TERM 1205 1205317 - 1205342 + H 93 -3.1 -6.06529 | overlap 1205318 CACAGCTACCCCCCC CCCCCCCCAGA CCAC TCTGTAGGGGC TTTTTTTTGTCTGTC TERM 1206 1205318 - 1205341 + H 71 -6.6 -4.21477 | overlap 1205317 ACAGCTACCCCCCCC CCCCCCCAGA CCAC TCTGTAGGGG CTTTTTTTTGTCTGT TERM 1207 1206076 - 1206089 + G 71 -6.7 -4.13014 | GGAGTGGCGAAGACG GCCTT TGAA AAGGC TTTTGGAGCTCTGGA CpB1097 1205398 - 1206228 + | Hb4 CpB1098 1206231 - 1206935 + | hypothetical protein TERM 1208 1207645 - 1207596 - g 100 -15.3 -3.53012 | gap 1, opp_overlap 1207599, overlap 1207599 TTTTTTCTCTGTAAA CTATTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAATTA TTGATAAGCTTCATT TERM 1209 1207599 - 1207642 + G 100 -14.8 -3.73534 | gap 1, opp_overlap 1207599 1207596 TTTCTCTGTAAACTA TTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAA TTATTGATAAGCTTC TERM 1210 1207642 - 1207599 - g 100 -19.2 -2.90496 | gap 1, opp_overlap 1207599, overlap 1207596 TTTCTCTGTAAACTA TTTG-GGGAACGAGGGAAAAC TCG GTCTTCCCTCATTCCCACAAA TTATTGATAAGCTTC TERM 1211 1208769 - 1208789 + G 70 -2.6 -4.98436 | gap 1, overlap 1208767 AGAAGTCGTCCTTTC CTTCCGTTC AGAA GAA-GGAGG TTTTTATAGTGTTGA CpB1099 1207201 - 1209303 + | hypothetical protein TERM 1212 1209604 - 1209620 + G 80 -6.5 -4.88918 | overlap 1209605 GGATCCTTCAGGTCT AGCGATC CAC GATCGCA TTTTGTTTAAGGTAG TERM 1213 1209605 - 1209619 + G 78 -10 -3.52628 | overlap 1209604 GATCCTTCAGGTCTA GCGATC CAC GATCGC ATTTTGTTTAAGGTA CpB1100 1209452 - 1210543 + | hypothetical protein ksgA 1210552 - 1211385 + | dimethyladenosine transferase CpB1102 1213362 - 1211428 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1214 1212848 - 1212824 - G 71 -9.5 -2.94354 | opp_overlap 1212817, overlap 1212843 TTAGAGATCGACATA TTGTTGTCATT CAA AATAACAACAA ACTTCGATAAATCTG CpB1103 1213624 - 1213367 - | hypothetical protein xseB 1213856 - 1213629 - | exodeoxyribonuclease VII small subunit xseA 1215524 - 1213860 - | exodeoxyribonuclease VII large subunit TERM 1215 1213917 - 1213907 - G 71 -6.8 -4.2349 | opp_overlap 1213907 TTGTGACAGTTAAAA TGGC CTC GCCA TCTTGCAACTGAATC TERM 1216 1214129 - 1214140 + g 78 -2.2 -5.50313 | AAGTTTCCTTGACAT TTGC ATAG GCGA TTTTTTGGTTTTGTA TERM 1217 1215131 - 1215141 + g 82 -3.2 -5.53288 | ATTGAGGAGCAAAGG GGAG GGG CTTC TTTTTTTCAGTTGCG TERM 1218 1216018 - 1216036 + G 71 -6.6 -4.21773 | GTAAAGTCTGTAGCT CAGGCGGG ACT CGTGCCTG TTCTTTGTGTTGGAG tpiA 1215655 - 1216419 + | triosephosphate isomerase CpB1107 1216432 - 1216602 + | hypothetical protein CpB1108 1216799 - 1216629 - | hypothetical protein secG 1216839 - 1217195 + | preprotein translocase subunit SecG CpB1110 1217361 - 1217209 - | hypothetical protein TERM 1219 1217944 - 1217928 - g 71 -2.3 -5.10077 | overlap 1217930 1217935 AAAGATCCTAAAAAA TTTAAAG CCT CTTTAGA GAAGATCAAACGTCG def 1217385 - 1217999 + | peptide deformylase CpB1112 1218962 - 1218066 - | ribonuclease HIII TERM 1220 1218593 - 1218608 + g 80 -2.6 -5.45726 | overlap 1218581 TTTTAGAGTCTTGGA CTTTAT TCTC ATAGAG TTTTTTTAAGATCTC CpB1113 1219234 - 1219052 - | hypothetical protein CpB1114 1219217 - 1219648 + | putative HTH transcription regulator CpB1115 1221215 - 1219845 - | hypothetical protein TERM 1221 1221572 - 1221596 + r 75 -5.1 -4.97405 | opp_overlap 1221582 ACAAAAGCTTCGCGG CAAAAAATAGG AAT CTTATTCTTTG TTTATTTTTATCCCT CpB1116 1223029 - 1221587 - | hypothetical protein TERM 1222 1224212 - 1224223 + G 78 -4.4 -5.24129 | TCGATAGTGCCCCCT CAGA TGCC TCTG TTTTTTATAAAGGCG CpB1117 1223674 - 1224543 + | hypothetical protein CpB1118 1224716 - 1225540 + | putative outer membrane protein