TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.500465 %AT, 2210045 nt, 16241 terms. Intergenic: 0.553767 %AT, H2T: 336315 nt, 2331 terms; T2T: 97284 nt, 1638 terms; H2H: 135817 nt, 2028 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|189499000|ref|NC_010831.1| Chlorobium phaeobacteroides BS1, complete genome (length 2736403) Cphamn1_0001 1 - 1476 + | chromosomal replication initiator protein DnaA TERM 1 1710 - 1697 - f 100 -3.1 -5.88565 | CTTACAACAAAAAAA CCTGA GTAA TCAAG ATTTCCACACACTCA Cphamn1_0002 1773 - 2897 + | DNA polymerase III, beta subunit Cphamn1_0003 2914 - 4005 + | DNA replication and repair protein RecF Cphamn1_0004 4109 - 4402 + | hypothetical protein TERM 2 4556 - 4568 + G 82 -7.7 -4.69487 | AATCATTATGGTTAC GGCAA TAT TTGCC TTTGTTTGTATATTT Cphamn1_0005 4548 - 5300 + | peptidase M50 TERM 3 5573 - 5597 + T 76 -2.7 -5.24416 | opp_overlap 5538 5533 5532 5573 5575 CTGCTCAAAATATGA GAGGCAGCC CTTTTGA GACAGCCTC TTTTTATTGTACTTA Cphamn1_0006 6899 - 5622 - | beta-lactamase domain protein TERM 4 6070 - 6084 + g 74 -3.6 -5.04325 | overlap 6064 TCGTAAGCCGAGACA TATGCT ACA AGTATA TTTTTCTCGTTTGGC TERM 5 6101 - 6112 + g 71 -7.2 -4.02468 | TTTTCTCGTTTGGCA GCGC TATA GCGC TTTGTGAATATTTTT TERM 6 6684 - 6702 + g 91 -4.5 -5.66684 | CCAGAACCGTTCTTT GGTGGTT TCAAC GACCGCC TTTTTTTCTGCATTG TERM 7 6900 - 6883 - G 72 -4.1 -4.87273 | AAGACTTTATAAAAA TATCCGG AATG CCGCATA AAATCTTTGATTATA Cphamn1_0007 9412 - 7022 - | DNA polymerase B region TERM 8 7513 - 7525 + g 73 -6.3 -4.58685 | opp_overlap 7512, overlap 7512 GCAGGCCCTGAACAT CTTCT TCA AGAAG TTTTTCAAACCCTTT Cphamn1_0008 11357 - 9486 - | glucose inhibited division protein A TERM 9 9944 - 9956 + g 71 -5.5 -4.53705 | opp_overlap 9942, overlap 9942 GCTCCTTAACAGAGG CGATG TTT CGTCG TTTTATCTCGAGGTT TERM 10 11828 - 11846 + H 85 -11.8 -3.322 | GATCCGCGATCTGAG TGACTGCT TAG AGCAGTCA TTACTCTATAGGCGT Cphamn1_0009 12118 - 12492 + | cytochrome c class I TERM 11 13078 - 13088 + G 70 -8.2 -3.65902 | TTATTATCTGTCCTC CGGG TAA CCCG TTTCGGTGCCCTCCC Cphamn1_0010 12507 - 13799 + | Flavocytochrome c sulphide dehydrogenase flavin-binding TERM 12 13846 - 13827 - f 80 -10.6 -3.37761 | opp_overlap 13828, overlap 13828 ACCTGAATACATGAA GGCCCGGC ATTT GCCGGGCT TTTCTGTTACTCGGC TERM 13 13845 - 13828 - f 87 -14.1 -2.62175 | opp_overlap 13828, overlap 13827 CCTGAATACATGAAG GCCCGGC ATTT GCCGGGC TTTTCTGTTACTCGG TERM 14 13828 - 13845 + F 100 -14.1 -4.70583 | opp_overlap 13828 13827 CCTGAATACATGAAG GCCCGGC ATTT GCCGGGC TTTTCTGTTACTCGG TERM 15 14284 - 14270 - g 76 -4.2 -5.00616 | CCGCGGCTGAAAAAA GTCTGA AAC TCGGAC TGGACCTGAGGGGAG TERM 16 15220 - 15239 + G 70 -10.7 -2.92192 | GCTATCGTTCTGGAC GGCGCAG TGTATT CTGCGCC TGTGGTTGAGTCAAA Cphamn1_0011 14086 - 15903 + | protein-export membrane protein SecD Cphamn1_0012 15927 - 16853 + | protein-export membrane protein SecF TERM 17 16848 - 16872 + F 72 -5.6 -4.53419 | overlap 16841 ATTAAACTCAGGGGG GGATAGCGGC ATGAA GCAGCTTTCC TTTCTTGTTGTGGTG Cphamn1_0013 16858 - 17691 + | hypothetical protein TERM 18 17704 - 17682 - f 77 -4.9 -4.90917 | overlap 17684 AAAGGCAAGGAAAAA GTTTCAGTA ATCTG TACTGAATC GCATAACGTGGTAAA Cphamn1_0014 17725 - 19047 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 19 19049 - 19066 + T 83 -2.6 -5.47218 | TCTCAGACATCTAAA CGTCTG ACATAG CGGGCG TTTTTTTCAATAAAG Cphamn1_0015 20970 - 19036 - | DNA gyrase, B subunit TERM 20 20436 - 20462 + g 86 -5.8 -5.1963 | TGAATATATCCGGAT CCGGCATGAAGG TGG TTTTCGTACCGG TTTTTGTTGATTCGC Cphamn1_0016 21137 - 20997 - | hypothetical protein Cphamn1_0017 21561 - 21181 - | protein of unknown function UPF0102 Cphamn1_0018 22198 - 21575 - | Ribonuclease H TERM 21 22270 - 22254 - H 73 -5.2 -4.64361 | opp_overlap 22246 GAAAAAAGACGAAAA TTTGTC CTTTT GACAAA AATGTTAAATAATAC Cphamn1_0019 22353 - 24065 + | ribonuclease, Rne/Rng family TERM 22 24475 - 24463 - g 80 -3.3 -5.24129 | GCGGCGGAGAAAAAA GACAG CTC CTGGC AGGTAAACGCCTGGG Cphamn1_0020 24316 - 25173 + | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TERM 23 25976 - 25994 + G 70 -3.1 -4.82901 | gap 1, overlap 25958 25976 25977 GGGTTGCTTGAGGCC G-CCGTTG ATGT CAGCGGGC TTTTTGTCAGCAAGG TERM 24 26138 - 26122 - g 76 -2.9 -5.14163 | ACTGATCAATAAAAA CAGCG CGTCAGC CGCCG AGATTGTTGCAGGGG Cphamn1_0021 25214 - 26905 + | carboxyl-terminal protease Cphamn1_0022 27584 - 26895 - | hypothetical protein TERM 25 27087 - 27063 - G 73 -11.5 -3.02471 | overlap 27065 TTCCGAGGAGACATA CATCAGTGACA CCG TGACACTGATG AACACCACAACAAAC Cphamn1_0023 28724 - 27585 - | geranylgeranyl reductase TERM 26 28582 - 28607 + g 76 -7.5 -4.3208 | opp_overlap 28581 AACTCTTCAATAAGG CCGAGCGGA ATAGCCCC TCCGCACGG TTTTACGTTCTCAAG Cphamn1_0024 30292 - 28826 - | glycyl-tRNA synthetase TERM 27 30455 - 30425 - R 72 -5.4 -4.46675 | opp_overlap 30434 ATTGAATATAACAAA CCGGAGAAATAAAC AGT GTTTGGTTATCCGG TGAGACCCTGTTCTA Cphamn1_0025 30608 - 30477 - | hypothetical protein Cphamn1_0026 30773 - 31360 + | hypothetical protein TERM 28 31446 - 31467 + F 84 -4.3 -5.45802 | ATGAAGCATCCGGAA GCCTTCGAG ATTA TTCGCGGGC TTTTTCTTTTCCGGG TERM 29 31816 - 31827 + G 73 -3 -5.00616 | GTTCAAAATCTCCAA TATC GACA GATA TTTTTTGCCAACGCA TERM 30 31968 - 31956 - g 83 -3.3 -5.39721 | TGACGAGAGAAAAAA TTGCC AAG GGCTA CGGGGCAAGAGCAGA Cphamn1_0027 31718 - 33085 + | aminotransferase class V TERM 31 33088 - 33104 + T 81 -9.5 -3.94634 | opp_overlap 33091 TAGCGTGGCCTGACA GGATATG CTG CATATCC TTATTTCCCCTGCTC Cphamn1_0028 33774 - 33469 - | ATP-dependent Clp protease adaptor protein ClpS Cphamn1_0029 35078 - 34128 - | Muramoyltetrapeptide carboxypeptidase TERM 32 34949 - 34961 + g 70 -4.7 -4.59773 | GCTCAGCAGGCTTTA CCCGG TAG CCGAG TTTTTCAAGATAAGA TERM 33 35095 - 35129 + r 100 -10.8 -5.24531 | opp_overlap 35095 TGTATAAGAAAAAAA CATCAGTGATTGGGAG ATT TTTCCTGTCACTGATG TTTTTTATAGCGCGT TERM 34 35129 - 35095 - R 100 -5.7 -5.88565 | opp_overlap 35095 TGTATAAGAAAAAAA CATCAGTGATTGGGA GATTT TTCCTGTCACTGATG TTTTTTATAGCGCGT Cphamn1_0030 35428 - 35162 - | H+transporting two-sector ATPase delta/epsilon subunit Cphamn1_0031 36831 - 35443 - | ATP synthase F1, beta subunit Cphamn1_0032 37167 - 37715 + | Redoxin domain protein Cphamn1_0033 37806 - 39665 + | Phosphoenolpyruvate carboxykinase (GTP) TERM 35 39701 - 39728 + F 100 -14.9 -5.45726 | opp_overlap 39701 TGATTTTTATCACAA GCCGCGACAGG ATTTTC CCTGTCGTGGC TTTTTTTAACCTCTG TERM 36 39728 - 39701 - f 95 -13.4 -3.41051 | opp_overlap 39701 TGATTTTTATCACAA GCCGCGACAGGA TTTT CCCTGTCGTGGC TTTTTTTAACCTCTG TERM 37 40186 - 40199 + G 70 -8.1 -3.70709 | opp_overlap 40186 40185, overlap 40184 ACCATAAGGCTAAAG GGCAG CTTC CTGCC TGTTTATTCCCTGAT TERM 38 40239 - 40227 - g 82 -7.7 -4.60487 | opp_overlap 40228, overlap 40229 GATGATGCGGAAAAA TCCTG GGA CAGGA GTATCGCCAGGTTTA Cphamn1_0034 40080 - 40280 + | hypothetical protein Cphamn1_0035 40564 - 40349 - | protein of unknown function DUF1458 Cphamn1_0036 40725 - 40588 - | hypothetical protein Cphamn1_0037 40839 - 41351 + | hypothetical protein TERM 39 41328 - 41340 + F 72 -3.3 -4.96848 | overlap 41319 GAGTATGCTGCCGAT GCAGA TAT TCAGC TTTTTATCTGACCCG TERM 40 41639 - 41622 - g 85 -4.1 -5.47218 | overlap 41623 GTTGATTGAAAAAAA GGCTCTT GTTG AAGAGCG GACCGGAGCTAAGCC Cphamn1_0038 41434 - 42216 + | Cobyrinic acid ac-diamide synthase Cphamn1_0039 42408 - 42713 + | hypothetical protein TERM 41 42751 - 42770 + F 71 -2.1 -5.16681 | gap 1, overlap 42737 42736 42754 TCTGCCTGAGATGAT CGG-CAGG TTTAT CCTGATCG TTTTGTTATTTTTCG TERM 42 44086 - 44072 - g 73 -6.4 -4.49981 | overlap 44075 GACATCATCAGAAAA CACCTC AAC AAGGTG TCGAATATGCAGCTG Cphamn1_0040 42815 - 44347 + | sodium:neurotransmitter symporter Cphamn1_0041 44542 - 45867 + | DNA methylase N-4/N-6 domain protein TERM 43 46064 - 46053 - g 70 -4.4 -4.65895 | GGCTGTATGTAAAAA TCAC CGAA GTGA TCCAGTCTGAGGTTG Cphamn1_0042 45860 - 46306 + | conserved hypothetical cytosolic protein Cphamn1_0043 47856 - 46330 - | transposase IS4 family protein Cphamn1_0044 48372 - 48067 - | hypothetical protein TERM 44 48709 - 48736 + G 76 -4.8 -5.03715 | TCATCTTCTTGGTGA TGAACTTGGAGC AGTT GCTCACGGTTCA TTTTTTGCGGCTGCT Cphamn1_0045 48597 - 48860 + | hypothetical protein Cphamn1_0046 48910 - 49908 + | CHAP domain containing protein Cphamn1_0047 49910 - 50374 + | hypothetical protein Cphamn1_0048 50473 - 50577 + | hypothetical protein Cphamn1_0050 52230 - 52928 + | cytochrome c class I Cphamn1_0051 53571 - 53329 - | hypothetical protein Cphamn1_0052 53645 - 55210 + | Integrase catalytic region Cphamn1_0053 55228 - 55968 + | IstB domain protein ATP-binding protein Cphamn1_0054 56590 - 56069 - | hypothetical protein TERM 45 56757 - 56723 - R 100 -20.3 -4.68593 | opp_overlap 56727 56730, overlap 56727 TCGATGAGCGAAAAA CAAAGAACCCGAAGA TCTTC TCTTCGGGTTCTTTG TGCCTGACAGGCATG TERM 46 56753 - 56727 - R 100 -15.3 -4.89063 | opp_overlap 56727 56730, overlap 56723 TGAGCGAAAAACAAA GAACCCGAAGA TCTTC TCTTCGGGTTC TTTGTGCCTGACAGG TERM 47 56727 - 56753 + r 100 -15.3 -3.91897 | opp_overlap 56727 56723, overlap 56730 TGAGCGAAAAACAAA GAACCCGAAGA TCTTC TCTTCGGGTTC TTTGTGCCTGACAGG TERM 48 56730 - 56750 + r 91 -11.2 -4.09117 | opp_overlap 56727 56723, overlap 56727 GCGAAAAACAAAGAA CCCGAAGA TCTTC TCTTCGGG TTCTTTGTGCCTGAC Cphamn1_0055 57031 - 56795 - | hypothetical protein Cphamn1_0056 57470 - 57126 - | hypothetical protein Cphamn1_0057 57691 - 57467 - | protein of unknown function DUF433 Cphamn1_0058 58161 - 57715 - | PilT protein domain protein Cphamn1_0060 59842 - 58520 - | amidohydrolase TERM 49 59313 - 59275 - GR 71 -8 -3.76224 | overlap 59276 CGGCGATGTAGGAAA TTCCGTCGAGCAGGGACG TGA CGCCTCCGCTCAACTGAC CGCTGTCGGGAGGAA TERM 50 59312 - 59276 - GR 78 -11.5 -2.8552 | overlap 59275 GGCGATGTAGGAAAT TCCGTCGAGCAGGGACG TGA CGCCTCCGCTCAACTGA CCGCTGTCGGGAGGA TERM 51 59468 - 59487 + gr 74 -7.2 -4.1822 | gap 1 CGCGTCGCGGATGGT CG-TGATGC CCT GCATCAGCG TTTCTTGAAGTCCCC Cphamn1_0061 59924 - 59817 - | hypothetical protein Cphamn1_0062 59989 - 60303 + | hypothetical protein TERM 52 60678 - 60650 - T 70 -5.4 -4.32034 | gap 2 GCAGGACTACGAAAA GCAGC-TCGA-AGA ACG TCTGCCGAAGCTGC ATGCAGAAATCCACA TERM 53 60768 - 60756 - T 82 -10.5 -3.87815 | overlap 60741 GCCGATGGCCAGAAA CGCCC GCT GGGCG TGACAGCCATAGAAG Cphamn1_0064 63109 - 61934 - | ATPase (AAA+ superfamily)-like protein TERM 54 63116 - 63152 + H 100 -12.5 -4.52589 | opp_overlap 63117, overlap 63117 GGGTATCATACTATA AGGTACAGATTGAATCT TTA AAATTCAATCTGTACCA TTTTCTCTGACAAGA TERM 55 63151 - 63117 - H 100 -18.2 -3.484 | opp_overlap 63117 63116 GGTATCATACTATAA GGTACAGATTGAATCT TTA AAATTCAATCTGTACC ATTTTCTCTGACAAG TERM 56 63117 - 63151 + H 100 -16 -3.31232 | opp_overlap 63117, overlap 63116 GGTATCATACTATAA GGTACAGATTGAATCT TTA AAATTCAATCTGTACC ATTTTCTCTGACAAG TERM 57 63623 - 63593 - H 82 -12.8 -2.78384 | opp_overlap 63585 63606, overlap 63598 TTTTGTTTTATGATA TGCAATATTGTAGT TGA ACTTCAATATTGCA CAATAATGATTGCTC TERM 58 65018 - 65054 + G 100 -12.5 -4.30844 | overlap 65014 TGGTATCAGACTTTG TGGTACAGATTGCATCT TTA AAATTCAATCTGTACCA TTTTCGTAATACGGT Cphamn1_0068 64936 - 65535 + | nucleotidyltransferase substrate binding protein, HI0074 family Cphamn1_0069 65532 - 65858 + | DNA polymerase beta domain protein region TERM 59 65933 - 65900 - T 100 -18.3 -4.58466 | opp_overlap 65904 65907, overlap 65904 GGGATAAGTATAAAA CAAAGAACCCGAGGC ATTC GCTTCGGGTTCTTTG TGCCTGTACCGGCTT TERM 60 65904 - 65929 + T 100 -15.5 -3.95073 | opp_overlap 65900 65904, overlap 65907 TAAGTATAAAACAAA GAACCCGAGGC ATTC GCTTCGGGTTC TTTGTGCCTGTACCG TERM 61 65929 - 65904 - T 100 -13.3 -4.82863 | opp_overlap 65904 65907, overlap 65900 TAAGTATAAAACAAA GAACCCGAGGC ATTC GCTTCGGGTTC TTTGTGCCTGTACCG TERM 62 65907 - 65926 + T 91 -11.4 -4.10188 | opp_overlap 65904 65900, overlap 65904 GTATAAAACAAAGAA CCCGAGGC ATTC GCTTCGGG TTCTTTGTGCCTGTA Cphamn1_0070 66376 - 65972 - | hypothetical protein TERM 63 66871 - 66859 - g 100 -10.5 -4.67011 | opp_overlap 66858 66856 AAGGCGACGGAAAAA CGCCC GAA GGGCG GTATTCGATTAGTGA Cphamn1_0071 66567 - 67145 + | ErfK/YbiS/YcfS/YnhG family protein Cphamn1_0072 69229 - 67205 - | ATP-dependent DNA helicase RecQ TERM 64 69983 - 69959 - g 70 -10 -3.29461 | gap 1, overlap 69960 GAACCTTGTCTACAA CCCCGG-AGGG CCTT CCCTGCCGGGA GAGCAACAGGCGCTT TERM 65 69982 - 69960 - g 70 -11.3 -2.57463 | gap 1, overlap 69959 AACCTTGTCTACAAC CCCGG-AGGG CCTT CCCTGCCGGG AGAGCAACAGGCGCT Cphamn1_0073 69330 - 70388 + | Radical SAM domain protein TERM 66 70570 - 70583 + G 70 -9.5 -3.32022 | TAGGATTTCTTGCCT CGGCG ATCG CGCCG TTGCTGTATAAACGG TERM 67 71342 - 71312 - g 74 -9.6 -3.57213 | overlap 71315 GATAGCAAGAATGAA CCACGAGATCGGCG GCA CGCCGGTCTGGCAG GATACGGTACTGATA TERM 68 71916 - 71933 + G 78 -2.6 -5.24531 | overlap 71917 GTTCTGGGATTGCTT TTCGGG CTTTTC CCCGAC TTTTTTATCGCCACT Cphamn1_0074 70536 - 72833 + | NADH dehydrogenase (quinone) Cphamn1_0075 72836 - 73252 + | Na+/H+ antiporter MnhB subunit-related protein Cphamn1_0076 73249 - 73614 + | NADH-ubiquinone oxidoreductase chain 4L TERM 69 74477 - 74515 + G 73 -6.1 -4.46656 | GGTTGTAGGAGTGCT GGGAGCGG-TAGCGCAATA TGA TA-TGCGCAAGCTGCTCTC TTTTCATATTATCAG Cphamn1_0077 73626 - 75128 + | NADH dehydrogenase (quinone) Cphamn1_0078 75125 - 75598 + | cation antiporter Cphamn1_0079 75595 - 75870 + | multiple resistance and pH regulation protein F Cphamn1_0080 75863 - 76192 + | monovalent cation/proton antiporter, MnhG/PhaG subunit TERM 70 76216 - 76206 - f 70 -6.8 -4.00842 | opp_overlap 76205 AGCAGAAAATAAATA CAGC AGG GCTG ATCTCTGGGTTCTTG Cphamn1_0081 76319 - 76807 + | hypothetical protein TERM 71 76986 - 77015 + G 73 -5 -4.66609 | opp_overlap 76991, overlap 76987 CTGAGCATTTTTGTC ATGAACCTGCAG AAGTTG CTGGAGGTTCAG TTTTTACGTCAAATC Cphamn1_0082 76920 - 77174 + | hypothetical protein Cphamn1_0083 77512 - 77291 - | protein of unknown function nitrogen fixation Cphamn1_0084 77857 - 77519 - | hypothetical protein TERM 72 77654 - 77639 - G 76 -4.6 -5.0133 | CATTGTTTTAAAAAA GGCTTC TATT GATGCC GCTGTATCAACAGGT TERM 73 77887 - 77911 + H 79 -2.8 -5.43866 | TTTTTATTCGAAGCT CCTGCCGT GTGACTGGG ACGTCAGG TTTTTTTGAAAGTTA Cphamn1_0085 78018 - 78611 + | NAD(P)H dehydrogenase (quinone) Cphamn1_0086 78632 - 80533 + | potassium efflux system protein TERM 74 80616 - 80604 - T 72 -7.7 -3.94465 | GTCAAAAGTAAAAGA CAAGG AAG CCTTG AAACACTCGAAATAA Cphamn1_0087 82158 - 80701 - | cation transporter TERM 75 81239 - 81225 - G 70 -8.6 -3.68351 | overlap 81202 TTGTCAGGATTGAAA CAACCT GGA AGGTTG CATGGCGTATGGAAT TERM 76 81357 - 81373 + g 82 -7.9 -4.61231 | overlap 81371 TTTCCGTGTTGTTAC GGACGGG TTC CCAGTCC TTTTTCAGGATATGG Cphamn1_0088 83577 - 82189 - | TrkA-N domain protein TERM 77 83130 - 83146 + g 70 -8.7 -3.53012 | TCATCTCGCCTTCAC CGATGTC GAC GACGTCG TTTGCCGAGGCCCGC Cphamn1_0089 84500 - 83730 - | hypothetical protein TERM 78 84970 - 84984 + G 70 -2.1 -5.00884 | gap 1 GAAATTTGCCGATAC CTGCGG CTGG CCG-AG TTTTTTCGAGCCGGT Cphamn1_0090 84605 - 85177 + | methionine-R-sulfoxide reductase Cphamn1_0091 86410 - 85202 - | arsenite-activated ATPase ArsA TERM 79 85415 - 85438 + g 82 -3.8 -5.27779 | overlap 85418 CGGGGCGCGCAGTTT CATGATGTAG TGAC CTTCATCCTG TTTTTTGATGTTGAC TERM 80 85595 - 85609 + g 83 -2.8 -5.4492 | overlap 85597 85600 CGAAAAAGTCCTGTC GATCTG ATC CAGATA TTTTTTCTGTATCTC TERM 81 86104 - 86083 - G 84 -4.4 -5.22943 | AGGAAAGCGAAAAAA GTTCTTCC ATGCCG GGCAGAAC CCCCATCTCTTCGAC Cphamn1_0092 86696 - 86514 - | hypothetical protein Cphamn1_0093 87069 - 86755 - | hypothetical protein Cphamn1_0094 87507 - 87304 - | Ion transport 2 domain protein Cphamn1_0095 88209 - 87607 - | hypothetical protein TERM 82 88290 - 88307 + r 77 -9.1 -3.78953 | opp_overlap 88285 CCGGCTAAATGGCTT CTGCCTG AAGG CGGGCAG TTTGGTCATGAAGCT Cphamn1_0096 89352 - 88279 - | peptide chain release factor 1 Cphamn1_0097 90743 - 89382 - | membrane-associated zinc metalloprotease TERM 83 90140 - 90156 + g 74 -2.1 -5.1287 | TCCGGGTAAGAATGT CCGGCGG GGC TTGCAGG TTTTTTCGCTCTCCA TERM 84 90568 - 90580 + g 74 -4.8 -4.89477 | overlap 90574 ACACCGATGCCGTAT TCGG TTTCT CCGA TTTTCTTCTTCCAGA TERM 85 90794 - 90782 - R 77 -10.5 -3.54935 | CAAACTGTGTCGAAA GCCCC TGA GGGGC ACCTATCTCTTAATT Cphamn1_0098 91952 - 90804 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Cphamn1_0099 92685 - 92311 - | acylphosphatase Cphamn1_0100 94729 - 92669 - | ATP-dependent metalloprotease FtsH TERM 86 93848 - 93892 + g 84 -4.2 -5.28942 | TCCTTTTCCCCGGCT GCGTCCTACGGCATCTATTT CGTCA ATAAAGATGATGCAGGGCGC TTTTTCTTTCGCCTC TERM 87 95009 - 95046 + H 73 -2.8 -5.15381 | gap 1, opp_overlap 95016 95017, overlap 95011 95017 AGTCCGGTAGGCGGT TACAAAAG-CACAACAG ATCGG CTGTTGCGTCGTTTGTG TTTTTTAAGTCTATT TERM 88 95548 - 95558 + G 79 -5.4 -4.95155 | opp_overlap 95548, overlap 95549 GTTTTTCGCATATGA TCAG AAA CTGA TTTTTGTACTGTGCC Cphamn1_0101 95138 - 95962 + | orotidine 5'-phosphate decarboxylase TERM 89 97701 - 97686 - g 73 -9 -3.78953 | opp_overlap 97686 97678, overlap 97672 ATGGCGATGACGAAA TCGGCA GGCT TGCCGA TCATGTTATTTATAT Cphamn1_0102 96005 - 97852 + | glucosamine/fructose-6-phosphate aminotransferase, isomerizing TERM 90 98440 - 98422 - g 73 -6 -4.52589 | overlap 98424 GGGGCCGACATAAAA CCGAAATC CCT GATTTCCG CATCTGCCATAGGAT Cphamn1_0103 98083 - 99021 + | domain of unknown function DUF1731 Cphamn1_0104 99095 - 99589 + | Ferritin Dps family protein Cphamn1_0105 99653 - 99838 + | hypothetical protein TERM 91 99894 - 99921 + T 75 -9.1 -3.64466 | opp_overlap 99894 99893, overlap 99895 ATACTGGCCATAAAG GGGCTGCCGTG GCAAAG CATGGCAGCCA TTGTATGTATGCAGT TERM 92 99895 - 99920 + T 82 -12.6 -2.78197 | opp_overlap 99894 99893, overlap 99894 TACTGGCCATAAAGG GGCTGCCGTG GCAAAG CATGGCAGCC ATTGTATGTATGCAG Cphamn1_0106 100221 - 99949 - | RNP-1 like RNA-binding protein TERM 93 100300 - 100322 + H 75 -9.2 -3.6392 | overlap 100302 ACGTTATCCGATAGC GATCAGCCAA CCA TTGGCTGATG TTGTAATTTACTCTA TERM 94 100302 - 100320 + H 85 -11.8 -3.38782 | overlap 100300 GTTATCCGATAGCGA TCAGCCAA CCA TTGGCTGA TGTTGTAATTTACTC TERM 95 101671 - 101692 + G 82 -6.5 -4.90266 | overlap 101672 TGGGATCGGTGGTAT TGTGGGTGC TCTC GCACTCACC TTTTTCATTCGTGAA TERM 96 101672 - 101691 + G 74 -10 -3.53437 | overlap 101671 GGGATCGGTGGTATT GTGGGTGC TCTC GCACTCAC CTTTTTCATTCGTGA Cphamn1_0107 100610 - 101944 + | ammonium transporter Cphamn1_0108 101956 - 102297 + | nitrogen regulatory protein P-II TERM 97 102367 - 102329 - f 100 -16.2 -3.14132 | opp_overlap 102334 102340, overlap 102334 102340 GCTGCGCTCCAGTAA TAAAAGGAAAAGCCGGTA TTC TGCCGGCTTTTCCTTTTT GCGGAAAGAATTGTT TERM 98 102334 - 102362 + F 100 -18.3 -4.56597 | opp_overlap 102334 102329 102340, overlap 102340 GCTCCAGTAATAAAA GGAAAAGCCGGTA TTC TGCCGGCTTTTCC TTTTTGCGGAAAGAA TERM 99 102362 - 102334 - f 100 -16.1 -4.71426 | opp_overlap 102334 102340, overlap 102329 102340 GCTCCAGTAATAAAA GGAAAAGCCGGTA TTC TGCCGGCTTTTCC TTTTTGCGGAAAGAA TERM 100 102356 - 102340 - f 86 -7.9 -4.78029 | opp_overlap 102340 102334, overlap 102334 102329 GTAATAAAAGGAAAA GCCGGTA TTC TGCCGGC TTTTCCTTTTTGCGG TERM 101 102340 - 102356 + F 91 -10.1 -4.77757 | opp_overlap 102334 102329 102340, overlap 102334 GTAATAAAAGGAAAA GCCGGTA TTC TGCCGGC TTTTCCTTTTTGCGG Cphamn1_0109 102503 - 103429 + | peptidase C1A papain Cphamn1_0110 104132 - 103590 - | Tetratricopeptide TPR_2 repeat protein TERM 102 103655 - 103691 + g 75 -8.8 -3.87869 | overlap 103656 CCTCAAAATCCCCAT AGCGGGCAGCGTA-GAGG AAA TCTCTTAC-CTGCCCGCG TTTATCGCCGATTCG TERM 103 103656 - 103690 + g 76 -12.3 -2.924 | overlap 103655 CTCAAAATCCCCATA GCGGGCAGCGTA-GAGG AAA TCTCTTAC-CTGCCCGC GTTTATCGCCGATTC Cphamn1_0111 104238 - 104975 + | chromosome segregation and condensation protein ScpA Cphamn1_0112 105006 - 105782 + | Methyltransferase type 11 TERM 104 106412 - 106437 + G 78 -4.1 -5.08601 | gap 1 TGCGAAGGTAAAGTG GAGGATGTTATG TGA CAGAA-ATCCTC TTTTTGTTACCATGC Cphamn1_0114 106362 - 107282 + | hypothetical protein TERM 105 107597 - 107578 - g 73 -5 -4.59773 | opp_overlap 107576 107578 107581, overlap 107581 GGTGAGCGGGAAAAA TGATGGCA GGTA TGCCATGA TGTTCGTCAAGATCC TERM 106 108263 - 108278 + G 74 -2.4 -5.1356 | opp_overlap 108257, overlap 108264 TTTAAGAAACGCGGG TCGCTG TATG CCGCGG TTTTTGTTGATAGGG Cphamn1_0115 107282 - 108520 + | hypothetical protein TERM 107 108853 - 108878 + F 80 -9.1 -4.07568 | gap 1 GCTTCAAATAGATCT CCGATATGGCTT TAT GAGCC-TATCGG TTTTCAGGCGGAGGG TERM 108 109503 - 109492 - g 78 -2.2 -5.31275 | opp_overlap 109493 109496, overlap 109493 109496 TTCCAGGAGAAAAAA TGAC GGAC GCCA TACTGTCGTGCCTCT TERM 109 109612 - 109597 - g 80 -10.4 -3.68261 | GCACAAGATTGCAAA CGCCTC TTAC GAGGCG AACGGGAACGGCGGG Cphamn1_0117 109124 - 110071 + | DNA methylase N-4/N-6 domain protein Cphamn1_0118 110074 - 110799 + | Type II site-specific deoxyribonuclease TERM 110 111507 - 111491 - f 71 -9.4 -3.04322 | opp_overlap 111477 CTTAACCGCCTAATA GCGACG CTTAC CGTCGC AATTGAGCCTGATAA TERM 111 111915 - 111929 + F 80 -10 -3.75718 | AAGATGCTTTGGGAT CGAAGG TGG CCTTCG TTGATTTTGCTTCAG TERM 112 112182 - 112192 + G 70 -8.2 -3.75105 | overlap 112181 TGATATACCATGGAC GCGC TAT GCGC TTATTGCTGAATTAG Cphamn1_0120 112153 - 112728 + | hypothetical protein TERM 113 112774 - 112792 + F 93 -5.9 -5.47159 | opp_overlap 112765, overlap 112769 112791 AGGAAATAACCCTGT GTCGGGT CATAT GCCCGGC TTTTTTATCTTGAAA TERM 114 113266 - 113241 - g 74 -3.9 -5.00616 | overlap 113243 113244 TCGGGGCCGAAAAAA GATCGCCTGAA CCTG TTCAAGCGGAC ACAGACAAATATCAG Cphamn1_0121 112854 - 114128 + | hypothetical protein TERM 115 114187 - 114173 - f 76 -5.6 -4.87318 | overlap 114174 GGCAAAAGGTAAAAA GGTGCC TTC GGCACG GAAATGTTAAGCCAT TERM 116 114186 - 114174 - f 73 -9.1 -3.51307 | overlap 114173 GCAAAAGGTAAAAAG GTGCC TTC GGCAC GGAAATGTTAAGCCA Cphamn1_0122 114364 - 114840 + | protein of unknown function UPF0079 Cphamn1_0123 115029 - 115655 + | peptidase M22 glycoprotease TERM 117 115902 - 115888 - f 72 -8.6 -3.63569 | TGAATGTTTTAATAA TAGAGG GGG CCTCTA AAAAGTTATAGAAGT TERM 118 116263 - 116279 + G 71 -5.8 -4.42788 | opp_overlap 116275, overlap 116275 TCGTACATATTTTCA TGCCTG AAGAA CGGGCA TTTTATGACCTTGAA Cphamn1_0124 115935 - 116366 + | iojap-like protein TERM 119 118932 - 118894 - g 74 -3.8 -4.92757 | opp_overlap 118898 118900, overlap 118898 TGATGAAGAAGAAAA TGAAGCCCTATCCGGTCC TGA GGATCAGATAGAACTTTT TGATTCCTGAGGTGA TERM 120 118928 - 118898 - g 75 -9 -3.87952 | opp_overlap 118898 118900, overlap 118894 GAAGAAGAAAATGAA GCCCTATCCGGTCC TGA GGATCAGATAGAAC TTTTTGATTCCTGAG TERM 121 118898 - 118928 + G 74 -4.6 -4.90266 | opp_overlap 118898 118894, overlap 118900 GAAGAAGAAAATGAA GCCCTATCCGGTCC TGA GGATCAGATAGAAC TTTTTGATTCCTGAG Cphamn1_0125 116456 - 118942 + | DNA gyrase, A subunit Cphamn1_0126 118969 - 119202 + | zinc finger CDGSH-type domain protein Cphamn1_0127 119235 - 120932 + | CTP synthase TERM 122 121022 - 121034 + F 93 -9.1 -5.15634 | TATACCTTCCTGCAA GTGCC GTA GGCAC TTTTTTCCTGCAATC TERM 123 121434 - 121444 + F 74 -5.4 -4.64861 | opp_overlap 121441 GGTAGATAGCCGGGT CAAC CAA GTTG TTTATTTTACAACGG TERM 124 121536 - 121525 - f 72 -5.8 -4.5852 | CAAGTCAAAGGAAAA CAGC TTCG GCTG CAAGTACTTGGCGCA TERM 125 121611 - 121596 - f 76 -10.4 -3.40566 | overlap 121589 121587 ACAGGACAGGGATAA CCCCGA GAAA TCGGGG ACAATACCTGATGAT TERM 126 123418 - 123451 + F 80 -4.7 -5.29385 | gap 1 GAACATATAAACTTT CCTGTTGATG-TGAGT GAT ACTCATCAATAATAGG TTTTTTGGTTAAGTT TERM 127 123857 - 123835 - f 73 -6.2 -4.38313 | AGACGAAATCCAAAA CTGCACAGGA GGA TCCTGAGTAG CACGGGATACGTGAG TERM 128 124042 - 124027 - f 77 -9 -3.81689 | AACAGTAGGAGCAAA CCTGTC TTCG GACAGG GGAGTGACTGCGTGC TERM 129 126617 - 126597 - f 86 -9.7 -4.43844 | opp_overlap 126597 CGATTATTTATAAAA GCCCGTC TCACAAC GACGGGC TTTTTATTTTTACCC TERM 130 126597 - 126617 + F 100 -9.7 -5.61881 | opp_overlap 126597 CGATTATTTATAAAA GCCCGTC TCACAAC GACGGGC TTTTTATTTTTACCC Cphamn1_0128 126804 - 127823 + | ferrochelatase Cphamn1_0129 127976 - 128683 + | PHP domain protein TERM 131 128917 - 128943 + T 72 -10.2 -2.91239 | overlap 128915 128917 128920 GGTGAATATTTTTGA TCCGTCGGATCA GCC TGATCTGACTGA TCTGTCCGATCTCTC TERM 132 128920 - 128940 + T 71 -10.5 -2.69977 | overlap 128917 128917 128915 GAATATTTTTGATCC GTCGGATCA GCC TGATCTGAC TGATCTGTCCGATCT Cphamn1_0131 129735 - 128959 - | DNA topoisomerase type IA zn finger domain protein TERM 133 129896 - 129920 + r 82 -10 -4.14739 | gap 1, opp_overlap 129896 TTCTGATGCAAAAAA GCCGCCTCTGG AAAT TCAG-GGCGGC TTTTGCAATGCATGC TERM 134 129920 - 129896 - R 93 -9.3 -5.08824 | gap 1, opp_overlap 129896 TTCTGATGCAAAAAA GCCGCCTCTG GAAATT CAG-GGCGGC TTTTGCAATGCATGC Cphamn1_0132 130171 - 129953 - | Catalase (peroxidase I)-like protein Cphamn1_0133 130286 - 130501 + | addiction module component, TIGR02574 family TERM 135 130984 - 130966 - g 93 -8.8 -4.90778 | opp_overlap 130970 130971 GCTATGTAAAGAAAA TCGAGGCC GTA GGCCTTGA CTACAGCTCGCTTGC TERM 136 132278 - 132260 - g 72 -9.6 -3.45768 | overlap 132269 CATGACAACCTACAA GAGCATCA AGT CGATGCTC GACAACGGCCTGGAT Cphamn1_0134 130851 - 132374 + | Integrase catalytic region TERM 137 132744 - 132702 - g 80 -10.4 -3.74251 | gap 1, opp_overlap 132733 GACAGGTGCAGGAAA GACCTGGCTGGCGTGCGCC TTTGGC GTCGC-CGCCTGCCGGGCC GGAATCAGCACCGCC Cphamn1_0135 132367 - 133104 + | IstB domain protein ATP-binding protein Cphamn1_0136 133215 - 133412 + | hypothetical protein Cphamn1_0137 133613 - 133822 + | hypothetical protein Cphamn1_0138 133822 - 134046 + | transposase, IS4 family protein Cphamn1_0139 135076 - 134054 - | hypothetical protein Cphamn1_0140 135289 - 135645 + | hypothetical protein Cphamn1_0141 135633 - 135923 + | plasmid stabilization system Cphamn1_0142 136337 - 136014 - | protein of unknown function DUF45 Cphamn1_0145 137675 - 137055 - | hypothetical protein TERM 138 138664 - 138686 + r 74 -6.9 -4.30559 | overlap 138649 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_0146 140233 - 138836 - | hypothetical protein TERM 139 138902 - 138916 + g 70 -8.6 -3.73072 | opp_overlap 138902 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_0148 142880 - 141318 - | Integrase catalytic region Cphamn1_0149 143452 - 142952 - | hypothetical protein TERM 140 143182 - 143197 + g 73 -6.1 -4.47217 | TTGCCCAACCATTAC CCGCT AATTCA AGCGG TTTTAGTTCGTGCTT TERM 141 143548 - 143525 - R 70 -7.4 -3.9243 | gap 1, opp_overlap 143524 143509 TAACGCCGCAAATAA CCG-GGCGC AAATGGA GCGCCGCGG AATTTGCGGTCCGAG TERM 142 144918 - 144951 + r 70 -5.4 -4.35926 | gap 1, overlap 144922 TTTTACCACCGATGA TGCACGGATTAAGCT GAAGA GGCTTTATCCGT-CA TTTTGCGTTTGACAT Cphamn1_0151 145241 - 144942 - | hypothetical protein TERM 143 145462 - 145477 + r 73 -4.7 -4.82128 | overlap 145468 TTGGTGAGTCCTGAA TGGCT ACAGGA AGCCA TTTTCTGTTTCATGA TERM 144 145549 - 145525 - R 100 -16.4 -5.78622 | opp_overlap 145525 CGATGGTAAAAAAAA GCCGCCCCCG TATCC CGGAGGCGGC TTTTTGAATGATGTC TERM 145 145525 - 145549 + r 100 -14.2 -4.69664 | opp_overlap 145525 CGATGGTAAAAAAAA GCCGCCCCCG TATCC CGGAGGCGGC TTTTTGAATGATGTC Cphamn1_0152 147778 - 145580 - | catalase/peroxidase HPI TERM 146 146752 - 146769 + g 86 -6.9 -4.91712 | CTGTCGGTTTCCACT GCCATGC TCCT GCAGGGC TTTTTGTCAGTTCCC TERM 147 147717 - 147741 + g 83 -13.5 -3.33261 | overlap 147713 147719 CGGTTTGCTATGCCG CCGCCGGCGAC TGG GTTGCCGGCTG TTCTGCCCGTTACAG TERM 148 147719 - 147739 + g 90 -14.7 -3.23447 | overlap 147713 147717 GTTTGCTATGCCGCC GCCGGCGAC TGG GTTGCCGGC TGTTCTGCCCGTTAC Cphamn1_0153 148468 - 148049 - | ferric uptake regulator, Fur family TERM 149 149083 - 149093 + H 74 -5.4 -4.64861 | opp_overlap 149090 GGTAGATAGCCGGGT CAAC CAA GTTG TTTATTTTACAACGG TERM 150 149185 - 149174 - H 72 -5.8 -4.5852 | CAAGTCAAAGGAAAA CAGC TTCG GCTG CAAGTACTTGGCGCA TERM 151 149260 - 149245 - H 76 -10.4 -3.40566 | overlap 149238 149236 ACAGGACAGGGATAA CCCCGA GAAA TCGGGG ACAATACCTGATGAT TERM 152 151067 - 151100 + H 80 -4.7 -5.29385 | gap 1 GAACATATAAACTTT CCTGTTGATG-TGAGT GAT ACTCATCAATAATAGG TTTTTTGGTTAAGTT TERM 153 151506 - 151484 - H 73 -6.2 -4.38313 | AGACGAAATCCAAAA CTGCACAGGA GGA TCCTGAGTAG CACGGGATACGTGAG TERM 154 151691 - 151676 - H 77 -9 -3.81689 | AACAGTAGGAGCAAA CCTGTC TTCG GACAGG GGAGTGACTGCGTGC TERM 155 154266 - 154246 - H 86 -9.7 -4.43844 | opp_overlap 154246 CGATTATTTATAAAA GCCCGTC TCACAAC GACGGGC TTTTTATTTTTACCC TERM 156 154246 - 154266 + H 100 -9.7 -5.61881 | opp_overlap 154246 CGATTATTTATAAAA GCCCGTC TCACAAC GACGGGC TTTTTATTTTTACCC TERM 157 154292 - 154319 + H 72 -5.6 -4.58395 | TACCCTACTACCTAC TATTTCTCCCCA TCGT TCGGGCGAAATA TTTTTAGCCCCTGCA Cphamn1_0154 154492 - 155637 + | hypothetical protein TERM 158 155806 - 155792 - g 91 -5.6 -5.52384 | opp_overlap 155792 155803, overlap 155794 GCGGGATTAAAAAAA CGGCAC TGA GTGCAG TTGTTACCGCTTTGT Cphamn1_0155 155665 - 156312 + | multiple antibiotic resistance (MarC)-related protein Cphamn1_0156 156346 - 156696 + | hypothetical protein Cphamn1_0157 156719 - 157303 + | protein of unknown function DUF1105 Cphamn1_0158 157348 - 157773 + | thioesterase superfamily protein Cphamn1_0159 157783 - 158307 + | hypothetical protein TERM 159 158798 - 158821 + G 70 -4.5 -4.65933 | gap 1 CAGCATCTTTCAATG CCG-GAGACG AGTAC CGGCTCGCGG TTTGTTTTGGGGCTA TERM 160 158890 - 158913 + G 86 -5.3 -5.31275 | gap 1 TCGATTATTGAGTTG TTG-GGCCGG AGACA CCGGCTGCAA TTTTTTCTGCTCGGA Cphamn1_0160 158308 - 159345 + | glycosyl transferase family 9 Cphamn1_0161 159342 - 160112 + | exodeoxyribonuclease III Xth TERM 161 160136 - 160165 + F 76 -8.5 -3.9777 | GGTGAGTACTGTTTT TCCGGACGCGACG AGGG TGTTGCGGCTGGA TTTATAGCTGTTGGA Cphamn1_0162 160326 - 160730 + | ribosomal protein S6 TERM 162 160876 - 160848 - g 79 -11.1 -3.54424 | TGTCATCGCTGGAAA TTTGACGAAAGAC CCG GTCTTTCGCCAGA CAAATTCCGGAGGAA Cphamn1_0163 160798 - 161280 + | single-strand binding protein Cphamn1_0164 161314 - 161577 + | ribosomal protein S18 Cphamn1_0165 161627 - 162073 + | ribosomal protein L9 TERM 163 162107 - 162136 + F 100 -15.9 -5.69379 | opp_overlap 162107 TCTGATTATGTGAAA CCGCACAATGATA TTGC TGTCATTGTGCGG TTTTTTTGATTATAT TERM 164 162136 - 162107 - f 100 -13.7 -3.62096 | opp_overlap 162107 TCTGATTATGTGAAA CCGCACAATGATA TTGC TGTCATTGTGCGG TTTTTTTGATTATAT Cphamn1_0166 162233 - 162478 + | hypothetical protein Cphamn1_0167 162619 - 163011 + | hypothetical protein Cphamn1_0168 164128 - 163100 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 165 163159 - 163147 - G 76 -7.7 -4.40561 | opp_overlap 163130 163147 163146, overlap 163144 CGTTTTCAAAAAGAA GACGA ATG TCGTC GATTTTGTAGCGTAA TERM 166 164062 - 164042 - G 91 -9 -4.90266 | opp_overlap 164042 TTTACGAACCAAAAA CTGGAGAC GGAAA GCCTCCAG TTTATCAGCACTGTT Cphamn1_0169 164499 - 164152 - | ribosomal protein L20 TERM 167 164324 - 164336 + g 83 -3.4 -5.43866 | opp_overlap 164324 CTCATGATCCACAAA GAAC GGAAG GTTC TTTTTTTAACCCTTC Cphamn1_0170 164728 - 164534 - | ribosomal protein L35 TERM 168 164635 - 164649 + g 73 -6.4 -4.44974 | TCTTTTTTTCCAGGT TGTGCG ACC CGTACA TTTTCTCACGTTTGA Cphamn1_0171 165366 - 164758 - | translation initiation factor IF-3 TERM 169 165342 - 165353 + g 95 -2.2 -5.9873 | TTACTTTTGGTTTTT GAGG AGCG CTTC TTTTTTTTCTCATAC TERM 170 165399 - 165421 + r 73 -6.2 -4.43877 | overlap 165401 TATCTGACGCAGATG TTTTGCCCGC TGT GCGGTCAGGA TTTGTTTCGGACTTC Cphamn1_0172 167395 - 165416 - | threonyl-tRNA synthetase Cphamn1_0173 169089 - 167680 - | chlorophyllide reductase subunit Z TERM 171 167735 - 167748 + g 83 -3.1 -5.46657 | gap 1 TTTCCCTGTTTGGCC GCC-AG TGC CTCGGC TTTTTTCTTCAGCTC Cphamn1_0174 170934 - 169183 - | glycoside hydrolase family 3 domain protein TERM 172 169938 - 169917 - G 89 -10.2 -4.4009 | GGTCAGGTGAGAAAA GAAGCAGG TCGTTG CCTGCTTC AACGGCACGTAAAGA TERM 173 170177 - 170187 + g 80 -3.2 -5.25803 | GGTTTCAGTTCAACG CGTT CCA GACG TTTTTTATCCGCGTT TERM 174 171011 - 170983 - R 78 -11.1 -3.18264 | opp_overlap 170980 GTGTTCACGTATCAA TCGATTGAACGGC TAA ACCGTTCAATCCA GAGTTGCTTCATTCA Cphamn1_0175 171542 - 171024 - | HNH endonuclease TERM 175 171684 - 171703 + r 93 -12.2 -3.90318 | opp_overlap 171694 171696, overlap 171693 171694 171696 GTTGGCAGGTTGTAG GGGCGAAA AATC TTTCGCCC TTTCTGAGGTCGTGA TERM 176 171733 - 171694 - R 80 -7.3 -4.58395 | gap 1, opp_overlap 171684 171693 171694 171696, overlap 171696 TGTAGGGGCGAAAAA TCTT-TCGCCCTTTCTGA GGTCG TGAGAAAGGGCGAGATGA ATTTAGACTGCAGAT TERM 177 171696 - 171730 + r 81 -12.3 -2.65354 | opp_overlap 171694 171696, overlap 171684 171694 171693 TAGGGGCGAAAAATC TTTCGCCCTTTCTGA GGTCG TGAGAAAGGGCGAGA TGAATTTAGACTGCA TERM 178 171730 - 171696 - R 70 -10.1 -2.60508 | opp_overlap 171684 171696 171694 171693, overlap 171694 TAGGGGCGAAAAATC TTTCGCCCTTTCTGA GGTCG TGAGAAAGGGCGAGA TGAATTTAGACTGCA TERM 179 171911 - 171928 + r 73 -9.1 -3.44924 | overlap 171910 171901 AATTGCCAGCATAGC CTCGGCG AACG CGTCGAG TGTTTCCCTGGTTTC TERM 180 172617 - 172634 + r 70 -2.7 -4.88918 | gap 1 GTCAGCATCAATGCC GCTACATC CGC GGTG-AGC TTTTCTTTAAGGTCC TERM 181 172911 - 172923 + r 74 -3.3 -5.09426 | TACATGAGCCTGAGA GAGCC CTG GGCTG TTTTTTCAGGTTGAA TERM 182 173006 - 173030 + r 70 -2.7 -4.99035 | CGGATTGTATTTCAT CGTGCAGCTGC CGA GCGGATACATG TTTTTGTCTACATGA Cphamn1_0177 174314 - 173499 - | Ribonuclease III TERM 183 173737 - 173749 + g 100 -3.4 -6.02914 | CTTTTATAATTGTTC TCGA CAGTA TCGA TTTTTTTTATATCGA Cphamn1_0178 175583 - 174339 - | 3-oxoacyl-(acyl-carrier-protein) synthase 2 Cphamn1_0179 175868 - 175632 - | acyl carrier protein TERM 184 175824 - 175844 + g 74 -6.9 -4.42594 | overlap 175826 GTTGACACCCATTTT GCTTACGAT GAT ATCGTAAAC TTTGTCTTTGATTTC Cphamn1_0180 176700 - 175963 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 185 176531 - 176549 + g 100 -3.8 -5.97575 | ACGTCAAGCTCCTTG CAGGTG ACTTTTC CGCCTG TTTTTTTTATCGCTT Cphamn1_0181 177642 - 176731 - | malonyl CoA-acyl carrier protein transacylase Cphamn1_0182 178664 - 177678 - | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 186 178735 - 178688 - R 76 -8.4 -3.91541 | gap 1, overlap 178693 GTATTAAACTAATAA GGACACTCCCTGATCACGGGGAC ACT GACGCCGTGATCAGGGA-TAACA GGATCCGGGAGGTTG TERM 187 178731 - 178693 - R 100 -16 -3.04877 | overlap 178688 AAACTAATAAGGACA CTCCCTGATCACGGGGAC ACT GACGCCGTGATCAGGGAT AACAGGATCCGGGAG TERM 188 178781 - 178795 + r 78 -8.6 -4.10795 | GTAACGGCCAGCGCT TCAGCA ATA TGCTGA TTTACCTTTTTTTCG Cphamn1_0183 179787 - 178762 - | fatty acid/phospholipid synthesis protein PlsX TERM 189 179456 - 179446 - G 74 -6.8 -4.30987 | overlap 179453 ACGGCCGAGAATAAA CAGC GAA GCTG CCATCAGAGCGCCGG TERM 190 179465 - 179483 + g 73 -10.2 -3.29511 | opp_overlap 179453 179465 GAAGCTGCCATCAGA GCGCCGGT ATT ACCTGCGC TTATGAAGCCGTCAG Cphamn1_0184 180002 - 179811 - | ribosomal protein L32 Cphamn1_0185 180559 - 180035 - | protein of unknown function DUF177 TERM 191 180853 - 180829 - R 91 -6.4 -5.40004 | opp_overlap 180829 GAGCAAATCAAAAAA GCAGCAGCAC TTTCT GTACTCCTGC TTTTTTGATTTGCTC TERM 192 180829 - 180853 + r 83 -4.2 -5.40004 | opp_overlap 180829 GAGCAAATCAAAAAA GCAGCAGCAC TTTCT GTACTCCTGC TTTTTTGATTTGCTC TERM 193 180982 - 180966 - R 71 -2.3 -5.09259 | overlap 180968 TACGGCAAAACAAAA CAGAAAA TTT TTCTCTA CATTTTTTAATTTTT TERM 194 181173 - 181183 + r 77 -2.4 -5.40072 | TTATCCCGCTGGATA GCGG GGC CCGA TTTTTTTCGGCAGGG TERM 195 181222 - 181232 + r 71 -2.4 -5.07652 | overlap 181202 TGTACCAATTTCATT GGCG CGC CACC TTTTATTTTAACAAC Cphamn1_0186 182052 - 181291 - | hypothetical protein TERM 196 181748 - 181762 + g 85 -7.8 -4.77438 | GCTAAAATATCTTTT TCTCCG TTG CGGGGA TTTTTGGTCGTCAGT Cphamn1_0187 182651 - 182055 - | hypothetical protein TERM 197 182298 - 182314 + g 70 -11.5 -2.60571 | opp_overlap 182298 182297 182295, overlap 182299 182312 TCTGAAATTAAAGAC CGCGCGC CGT GTGCGCG CTTGATTGAGCGCTT TERM 198 182299 - 182315 + g 75 -10.8 -3.3482 | opp_overlap 182298 182297 182295, overlap 182298 182312 CTGAAATTAAAGACC GCGCGC CGTGT GCGCGC TTGATTGAGCGCTTG TERM 199 182476 - 182466 - G 70 -3.2 -4.78149 | GCGATAATCCAAAAA CGCA TCG TGCA ACTGCTTCTCTACAA Cphamn1_0188 185094 - 182767 - | N-6 DNA methylase TERM 200 182887 - 182871 - G 86 -6.7 -4.98531 | opp_overlap 182871 CTTTCAAACCAAAAA TTTGATT CTG AATCAAA TCTGATCTCAAAACT TERM 201 182901 - 182925 + g 70 -3 -4.8487 | gap 1, opp_overlap 182901 AATCTGATCTCAAAA CTTG-TTCAAG ATAT TTTGAATCAAG TTCTTTTTTTGGTGA TERM 202 184947 - 184934 - G 100 -4.5 -5.84381 | opp_overlap 184934, overlap 184936 184938 TCATCAACAAAAAAA GATGG CGAG CCACC AGCTTTGATAGCCGC TERM 203 184948 - 184936 - G 71 -5.5 -4.55661 | opp_overlap 184934, overlap 184934 184938 ATCAACAAAAAAAGA TGGCG AGC CACCA GCTTTGATAGCCGCT TERM 204 185836 - 185854 + r 77 -7.4 -4.33105 | CTTAAACTTTTCTTT TGGCTCAG TAA CTGGGTCA TTTTGATAATCATTG TERM 205 186129 - 186117 - R 70 -6.3 -4.16016 | opp_overlap 186117 186116 CTACTTGTGAAGAAA TTTGC ATG GCAAA GTTTGATTCACTGTA TERM 206 187388 - 187408 + r 100 -4.7 -5.68023 | opp_overlap 187392, overlap 187392 CTTGGTCTTTAGCGG AAAAGCGGA TCA TTCGCTTTC TTTTTTTCCTTCTAC TERM 207 187392 - 187404 + r 83 -5.5 -5.25976 | opp_overlap 187392, overlap 187388 GTCTTTAGCGGAAAA GCGGA TCA TTCGC TTTCTTTTTTTCCTT TERM 208 187690 - 187670 - R 80 -8.3 -4.2717 | opp_overlap 187676, overlap 187676 ATTATTTCATTAAAA CATCAAGCG AAA CGCCTAATG CGTCCGCTATTTTTT Cphamn1_0190 187865 - 187656 - | transcriptional regulator, XRE family TERM 209 187805 - 187823 + g 100 -5.3 -5.80817 | opp_overlap 187805 GGACATCTTGAGAAA TACCGAG TTTGT TTCGGTA TTTTTTTATATTCCC TERM 210 188083 - 188073 - g 80 -2.4 -5.40072 | CCCTGCCGAAAAAAA TCGG GCC CCGC TATCCAGCGGGATAA TERM 211 188274 - 188290 + G 74 -2.3 -5.09259 | overlap 188278 AAAAATTAAAAAATG TAGAGAA AAA TTTTCTG TTTTGTTTTGCCGTA TERM 212 188403 - 188427 + G 95 -6.4 -5.50313 | opp_overlap 188403 GAGCAAATCAAAAAA GCAGGAGTAC AGAAA GTGCTGCTGC TTTTTTGATTTTATA TERM 213 188427 - 188403 - g 87 -4.2 -5.40004 | opp_overlap 188403 GAGCAAATCAAAAAA GCAGGAGTAC AGAAA GTGCTGCTGC TTTTTTGATTTTATA Cphamn1_0191 187930 - 188553 + | hypothetical protein TERM 214 189561 - 189549 - g 74 -4.8 -4.79451 | AGGTCAAATAGAAAA GGCA TTTCT TGCC GCACTCAGGAAGACG Cphamn1_0192 188593 - 189657 + | protein of unknown function DUF306 Meta and HslJ TERM 215 189799 - 189779 - f 80 -7.5 -4.58395 | overlap 189782 TGCATCGCGGAAAAA CTACAGAGC GGT GCCCTGAAG GGAACGATATGGTTG TERM 216 189978 - 190004 + F 100 -7.9 -5.83211 | ATACCGGCATATGTA GCCACCTGCCT CACAA GGGTCGGTGGC TTTTTTGTTTTACTG TERM 217 190142 - 190128 - g 79 -7.1 -4.60977 | opp_overlap 190127 AAGAGAATTACAAAA GCACC TCACT GGTGC AGTATTGATTTGAGG Cphamn1_0193 190041 - 191720 + | 2-isopropylmalate synthase TERM 218 191900 - 191934 + F 71 -7.9 -3.77666 | gap 1 ATCTGCTTCGTTACA GGGAAC-TTGCGGTAG TTCA CTACAGCGGCGTTCCC TTTGCCTTGCATCTA Cphamn1_0194 192015 - 192473 + | ferric uptake regulator, Fur family TERM 219 192462 - 192481 + F 73 -6.4 -4.43755 | overlap 192441 CTGCAGGAGCTACGG CAGCAGGG TTGA TTCTGCTG TTTTCACTTTGTTAT Cphamn1_0195 192470 - 193348 + | periplasmic solute binding protein Cphamn1_0196 193345 - 194076 + | ABC transporter-related protein Cphamn1_0197 194114 - 194923 + | ABC-3 protein TERM 220 195494 - 195504 + G 73 -5.4 -4.63218 | TTTCTCGACAGTCTG CAGT TCA ACTG TTTTGTTACCGACAG TERM 221 196143 - 196155 + G 70 -9.1 -3.52341 | GGCCTCATCTTGTCT GCGGT GAC ACCGC TTCTGATATTCCCAT TERM 222 196357 - 196343 - g 70 -3.4 -4.75063 | overlap 196344 AGAAAACGTCAAAAA GGGCGC AAA GCACCG GGTATTTTTATATAG Cphamn1_0198 195035 - 196372 + | hypothetical protein Cphamn1_0199 196515 - 196739 + | hypothetical protein Cphamn1_0200 196786 - 197172 + | CrcB protein TERM 223 197298 - 197267 - f 74 -5.7 -4.65895 | opp_overlap 197271 197272, overlap 197268 197271 TTCGGCAGGGAAAAA TGTAGGGGCAGGC CTCCGT GCCTGCCCGTTCT TACGTGGCAGAACGG TERM 224 197297 - 197268 - f 71 -9.2 -3.39216 | opp_overlap 197271 197272, overlap 197267 197271 TCGGCAGGGAAAAAT GTAGGGGCAGGC CTCCGT GCCTGCCCGTTC TTACGTGGCAGAACG TERM 225 197294 - 197271 - f 70 -9.5 -2.85361 | opp_overlap 197271 197272, overlap 197268 197267 GCAGGGAAAAATGTA GGGGCAGGC CTCCGT GCCTGCCCG TTCTTACGTGGCAGA TERM 226 197271 - 197294 + F 77 -9.5 -3.67597 | opp_overlap 197271 197268 197267, overlap 197272 GCAGGGAAAAATGTA GGGGCAGGC CTCCGT GCCTGCCCG TTCTTACGTGGCAGA TERM 227 197272 - 197293 + F 85 -13 -2.80344 | opp_overlap 197271 197268 197267, overlap 197271 CAGGGAAAAATGTAG GGGCAGGC CTCCGT GCCTGCCC GTTCTTACGTGGCAG Cphamn1_0201 197348 - 197689 + | protein of unknown function DUF190 TERM 228 197789 - 197740 - T 100 -16 -3.27687 | opp_overlap 197751, overlap 197751 AATGAAAAAAGCAGA GAAACAAAAAAGCGTGAGCCGT CTTAAC ACAGCTCACGCTTTCTGATTTC CGGAAGCAGTACTTA TERM 229 197751 - 197778 + T 91 -11.3 -4.13654 | opp_overlap 197751 197740 CAGAGAAACAAAAAA GCGTGAGCCGT CTTAAC ACAGCTCACGC TTTCTGATTTCCGGA TERM 230 197778 - 197751 - T 100 -13.5 -5.76237 | opp_overlap 197751, overlap 197740 CAGAGAAACAAAAAA GCGTGAGCCGT CTTAAC ACAGCTCACGC TTTCTGATTTCCGGA Cphamn1_0202 199097 - 197802 - | glutamate-1-semialdehyde-2,1-aminomutase TERM 231 198821 - 198844 + g 70 -3 -4.84761 | gap 1 CAATTTCCATTTCGA TCGGTGTCCCG AAA CTGGTC-CCGA TTTTTGTCAGGGTGT TERM 232 199003 - 198989 - G 74 -11.4 -3.13403 | opp_overlap 198986, overlap 198987 CTTTTGCCATGAATA TCGGCG TGC CGCCGA CGGATTTGAAAGCGC Cphamn1_0203 200056 - 199271 - | DNA repair protein RecO TERM 233 200312 - 200323 + G 71 -7.2 -4.05714 | overlap 200310 GAAAGGGTTATCAGC GCCG AGGG CGGC TTTGTGCTTAAGGGT Cphamn1_0204 200186 - 200431 + | regulatory protein, FmdB family TERM 234 200457 - 200476 + T 100 -11.4 -5.00027 | opp_overlap 200457 TATATATCAAGCAAA GCCTTCCC TACA GGGGAGGC TTTTGTGTTTTTAGT TERM 235 200476 - 200457 - T 79 -9.2 -3.99353 | opp_overlap 200457 TATATATCAAGCAAA GCCTTCCC TACA GGGGAGGC TTTTGTGTTTTTAGT Cphamn1_0205 201440 - 200511 - | hypothetical protein TERM 236 201078 - 201088 + g 70 -2.4 -5.00895 | ATTTCCTGACAGTTT CGCG ATG CCCG TTTTTGTGTAGTACA Cphamn1_0206 201499 - 202605 + | UDP-N-acetylglucosamine 2-epimerase TERM 237 203230 - 203273 + G 71 -7.4 -4.05788 | overlap 203231 AAAACGCTCGCCTCA TCTCGATCCGGTTGTTTCAG AACT CAGAAATGACGGGTTCGAGG TTTCGTTTCACAAGG Cphamn1_0207 202667 - 203389 + | hypothetical protein TERM 238 203446 - 203434 - f 73 -6.3 -4.3739 | overlap 203436 GAGTTGTTCAGAAAA TCTGT CAG ACAGA CAACCAGTGATGCTC TERM 239 203924 - 203904 - g 89 -14.1 -3.60971 | overlap 203909 ACCTGAACCCGGAAA CGACATTGG TCG CCAATGTCG GCGACCAGACGCTGA Cphamn1_0208 203498 - 204499 + | Radical SAM domain protein TERM 240 204616 - 204634 + F 74 -11 -2.6999 | opp_overlap 204602 204600, overlap 204611 204626 ACTTGCCGATTGCCG GTACCGGC AAG GCTGGTAC TACTATCCCTTTTAC Cphamn1_0209 204676 - 204798 + | hypothetical protein TERM 241 204992 - 205014 + G 70 -4.2 -4.65895 | gap 1, opp_overlap 204996 CAGACCCGAGTATAG GC-AAGACG TATCGC CGTCTTCGC TTTTTGGCTGGAGCG TERM 242 205133 - 205147 + G 71 -5.6 -4.57218 | opp_overlap 205128 TTGTCAAAGACGGAG GCGTGC CCC GAACGC TTTTCATTATGTTCT Cphamn1_0210 204955 - 205758 + | hypothetical protein Cphamn1_0211 206045 - 207199 + | integrase family protein Cphamn1_0212 207196 - 207885 + | hypothetical protein Cphamn1_0213 207888 - 208421 + | hypothetical protein Cphamn1_0214 208476 - 209330 + | hypothetical protein Cphamn1_0215 209445 - 209741 + | putative excisionase TERM 243 209787 - 209764 - g 100 -9.6 -4.77757 | CGCGAAAAAGCAAAA GCCTCACC GGGCGAGA GGTGAGGC TTAAGAAGGAATTTG Cphamn1_0216 209745 - 209909 + | hypothetical protein Cphamn1_0217 209906 - 211366 + | phage/plasmid primase, P4 family TERM 244 212061 - 212047 - f 76 -6.4 -4.45083 | TCGAGAGCGAGAAAA CTGCAA TAA TCGCAG CCGGTTTCATGCCGG Cphamn1_0219 212696 - 212881 + | hypothetical protein Cphamn1_0220 212972 - 213472 + | phage terminase, small subunit, , P27 family TERM 245 213518 - 213545 + G 82 -10.6 -3.92659 | overlap 213499 CTGAGCTGTTTATGA GCGTCGTTTTTC GTTG GAAGGACGGCGC TTTGCGTTTTCACCC Cphamn1_0221 213469 - 213573 + | hypothetical protein TERM 246 213993 - 214020 + F 77 -6.9 -4.52669 | overlap 213996 CTCCGACTTTCCCCG TAGGGGCAGCC CCCTGT GGCCGCCCGTA TTTGTTTGCCTTCTT Cphamn1_0223 214319 - 214504 + | hypothetical protein TERM 247 215464 - 215481 + F 72 -6.9 -4.26903 | GCTTCTGGTGATCGT TGCCGGG CTTT CCCGGGA TTTTCCTGCAGTGAC TERM 248 217576 - 217539 - g 83 -9.1 -4.28049 | gap 1 GTGAAAACTGGAAAA CCGACGTTCACCCTCGGT GAC ACCGGCGGC-AACGCCGG TCTCGGCCTCGCGTC Cphamn1_0226 216966 - 217706 + | protein of unknown function DUF169 Cphamn1_0227 218301 - 217837 - | hypothetical protein TERM 249 217888 - 217902 + g 76 -6.4 -4.68593 | CTGACGGATGTCCTG CAGGAT GTT GTCCTG TTTTTCGATGGTCAG Cphamn1_0228 218922 - 218629 - | hypothetical protein TERM 250 218813 - 218803 - G 70 -2.4 -5.05782 | AGCGATCTCAAAAAA GTCG GCA CGCC ATAACCCGTAAAGCG Cphamn1_0229 219569 - 218919 - | hypothetical protein Cphamn1_0230 220074 - 220640 + | NLP/P60 protein Cphamn1_0231 220811 - 221014 + | hypothetical protein Cphamn1_0232 221011 - 221418 + | PilT protein domain protein Cphamn1_0233 223999 - 221828 - | Radical SAM domain protein TERM 251 221918 - 221908 - G 76 -6.8 -4.56775 | ACCCTTGTTTAAAAA GCTC AAT GAGC ATGAATGTAGCGGCC TERM 252 223555 - 223544 - G 72 -3.6 -4.80736 | CAGGAAAGAAACAAA GCCA TATT CGGC TTCTCCTCTGAAAAT TERM 253 224200 - 224254 + r 76 -8.7 -3.9941 | GAATACAACTGGAGG TGCAGTTAGTTATTCCGGATCCTGA AGACA TGAGGACCCGGAATACTTGAATGCA TTTGATTGTGGCAGG Cphamn1_0234 224625 - 224284 - | hypothetical protein Cphamn1_0235 224871 - 224719 - | hypothetical protein TERM 254 224796 - 224786 - G 93 -4 -5.82316 | opp_overlap 224793 ATCACTGAAAAAAAA GTTA AGG TAAC TGGGGCAGTGATTAG Cphamn1_0236 225754 - 224897 - | Peptidase M23 TERM 255 224966 - 224953 - G 73 -5.9 -4.55295 | overlap 224954 TGCCGTATAAATAAA CCCCC CAGT GGAGG TGTGCGCCGGTGGAG Cphamn1_0237 226565 - 225762 - | metallophosphoesterase TERM 256 226118 - 226176 + g 72 -3.7 -4.90266 | overlap 226119 GTACCAGCCAGTTGA TCTGCTGCTGACCGATCGCACCGCAGT AGAGC GTTGCCCAGGGATCGCTCATCAGCAGG TTTTTCCTTGATCGG Cphamn1_0238 227751 - 226660 - | peptide chain release factor 2 TERM 257 227608 - 227626 + g 74 -4.5 -4.85918 | overlap 227616 227619 227623 GATCTTGTTGGCTTC CTGCTGG TTCTC CCAGAAG TTTTCTTCTGTGGTG TERM 258 229759 - 229777 + G 71 -6.7 -4.19238 | gap 1, opp_overlap 229757 229759 TCGATCCTCAGAACA CGCATGCC GGAT GGC-TGCG TTTTCCACTTGAAGC Cphamn1_0239 227817 - 229937 + | alpha amylase catalytic region TERM 259 231480 - 231490 + G 71 -5.4 -4.56775 | TCAGTCTCAGAATCC TCAG GTC CTGA TTTTTACCAGGACAT Cphamn1_0240 230044 - 233361 + | trehalose synthase TERM 260 234142 - 234166 + G 72 -3.5 -4.88407 | TCGCCTCGCTCTCAT CGTCATCATTG CCG CGGTGCTGATG TTTTTGCTTACCTGG TERM 261 235915 - 235925 + G 73 -3.2 -5.02074 | GGTTCTTTATACCCC TCTG AAC CAGG TTTTTTACACCGTAC Cphamn1_0241 233402 - 236077 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 262 236135 - 236165 + G 93 -14 -3.67792 | overlap 236145 TCGTCGATGAGCCTG CCTGCAAGGGGCCG TTT CGGCTTCTTGTGGG TTTCCATGGCTATGG TERM 263 236145 - 236155 + G 72 -8.2 -3.86995 | overlap 236135 GCCTGCCTGCAAGGG GCCG TTT CGGC TTCTTGTGGGTTTCC Cphamn1_0242 236074 - 236730 + | esterase/lipase, putative Cphamn1_0243 236965 - 236777 - | hypothetical protein Cphamn1_0244 237452 - 237847 + | DNA polymerase beta domain protein region Cphamn1_0245 237840 - 238265 + | protein of unknown function DUF86 Cphamn1_0246 239093 - 238272 - | MazG family protein TERM 264 238457 - 238485 + g 74 -6.7 -4.39386 | overlap 238458 TGTAGTTGACGATGG TGAAGAGGAGGTC GCC GAACTCTTCTTCC TTTTCCTCCTTTGAA TERM 265 238458 - 238484 + g 73 -10.2 -3.22909 | overlap 238457 GTAGTTGACGATGGT GAAGAGGAGGTC GCC GAACTCTTCTTC CTTTTCCTCCTTTGA TERM 266 238677 - 238689 + g 70 -4.7 -4.59853 | TTTTTCTTTCAGTTT CAGGG ATT CCCAG TTTTTGAGGACTTCC Cphamn1_0247 239220 - 239891 + | short-chain dehydrogenase/reductase SDR TERM 267 240577 - 240609 + G 73 -12 -2.57132 | gap 1, opp_overlap 240555, overlap 240558 240576 CAGTCCTATCAGCAC GGCAGGTTGCTGCGC GAGG GCGTGGCGACC-GCC ATTATCGGGAGGCCC Cphamn1_0248 239908 - 241329 + | tRNA modification GTPase TrmE TERM 268 241449 - 241470 + F 71 -3.7 -4.74103 | GTTAGGAACGCTGTT CGGTAAGTT GAAT AACTTGGCG TTTTTGACTTGAGAG Cphamn1_0249 241682 - 243214 + | hypothetical protein Cphamn1_0250 243267 - 243638 + | holo-acyl-carrier-protein synthase Cphamn1_0251 243728 - 243922 + | hypothetical protein TERM 269 243966 - 243947 - T 100 -11.4 -6.09133 | opp_overlap 243947 GAGGGCAAAAAAAAA CTCCCGCG GAAT CACGGGAG TTATTCAAGCTGGTG TERM 270 243947 - 243966 + T 75 -9.2 -3.63991 | opp_overlap 243947 GAGGGCAAAAAAAAA CTCCCGCG GAAT CACGGGAG TTATTCAAGCTGGTG Cphamn1_0252 244508 - 243996 - | rare lipoprotein A TERM 271 244542 - 244532 - H 80 -5.4 -5.14563 | opp_overlap 244522 GGTTTGATTAAAAAA TCTG TTC CAGA TGAATACTTCCTGTG Cphamn1_0253 244891 - 246090 + | arsenite-activated ATPase ArsA Cphamn1_0254 246231 - 246518 + | hypothetical protein Cphamn1_0255 246771 - 246538 - | hypothetical protein TERM 272 246651 - 246685 + g 74 -11.6 -3.17212 | opp_overlap 246650 246647, overlap 246654 TGACCTGAAATTCAG CAGGCTCATTGAAAAT CCG GTTTTCAATGAGCTGG TTACTCGAGTCGTAA TERM 273 246654 - 246682 + g 82 -14.1 -2.78547 | opp_overlap 246650 246647, overlap 246651 CCTGAAATTCAGCAG GCTCATTGAAAAT CCG GTTTTCAATGAGC TGGTTACTCGAGTCG Cphamn1_0256 248256 - 246928 - | pentapeptide repeat protein TERM 274 247189 - 247203 + g 80 -4.2 -5.1675 | GCCAGTCAGATCGGC GCCG CTCAGGT CGGC TTTTTTCATGAATGC Cphamn1_0257 249149 - 248328 - | protein of unknown function DUF6 transmembrane Cphamn1_0258 249364 - 250065 + | NAD-dependent epimerase/dehydratase TERM 275 250112 - 250139 + T 89 -12 -3.71284 | TATTTTCGGGTTTGT GCGCGGGCTG ATGCTTGG TAGCCCGCGC TTCTATTAGTACAAG Cphamn1_0259 253198 - 250181 - | Radical SAM domain protein TERM 276 251575 - 251591 + g 73 -2.9 -5.0538 | overlap 251576 GGTCGAGCATGTCTA TGCCTCT GAC AGAGCCG TTTTTTCCGGTCAGC TERM 277 252920 - 252904 - G 80 -3 -5.27779 | gap 1 GTGAAGATGAAAAAA GGCA-GT GGGA ACATGCC ATGTTGCAGCGGTTG TERM 278 253281 - 253255 - R 100 -7.4 -5.80364 | gap 1, opp_overlap 253255 ACGGGAATAAAAAAA GCAGCA-CTTC GTCAGA GAAGGTGCTGC TTTGAAGATATGAAA Cphamn1_0260 253567 - 253313 - | bacteriochlorophyll C binding protein Cphamn1_0261 255077 - 253671 - | Na+/solute symporter TERM 279 254710 - 254696 - G 76 -8.6 -4.18018 | CCCCGTCAGCTAAAA TTCTGG TGA CCAGAA AAACAGTTGAGGCAA Cphamn1_0262 256262 - 255099 - | hypothetical protein TERM 280 255366 - 255348 - G 82 -11 -3.80114 | overlap 255349 CATGAAGGCAGCAAA CGTGACCG GAT CGGTCACA TGAAGGAACATTGCG TERM 281 255365 - 255349 - G 76 -12.3 -2.87586 | overlap 255348 ATGAAGGCAGCAAAC GTGACCG GAT CGGTCAC ATGAAGGAACATTGC Cphamn1_0263 257345 - 256413 - | Nucleotidyl transferase Cphamn1_0264 258346 - 257342 - | aminoglycoside phosphotransferase TERM 282 258451 - 258423 - R 100 -9.8 -5.60993 | gap 1 CGTTTGATAAAAAAA GCACCTTAATACA GGGC TGTAT-AAGGTGC TGAAACTTATCGGTG Cphamn1_0265 258704 - 258474 - | chlorosome envelope protein B Cphamn1_0266 259004 - 258888 - | hypothetical protein Cphamn1_0267 260418 - 259009 - | Radical SAM domain protein TERM 283 259293 - 259307 + g 72 -3.6 -4.88067 | TCAGCCCGCTTTCCT TGTATT CAT GATACA TTTTTGTGCCTGGAT Cphamn1_0268 260797 - 261270 + | 2-vinyl bacteriochlorophyllide hydratase Cphamn1_0269 261306 - 261527 + | hypothetical protein TERM 284 262063 - 262089 + G 86 -2.9 -5.68438 | opp_overlap 262066 262068, overlap 262065 262068 CAGCTGCGACAACAA TAATACCGGCA GGTCA TGCCGGTTCTG TTTTTTCTTTGCTGA TERM 285 262068 - 262084 + G 83 -9.4 -4.29034 | opp_overlap 262066 262068, overlap 262065 262063 GCGACAACAATAATA CCGGCA GGTCA TGCCGG TTCTGTTTTTTCTTT TERM 286 262084 - 262068 - g 70 -9.4 -3.60364 | opp_overlap 262068 262065 262063, overlap 262066 GCGACAACAATAATA CCGGCA GGTCA TGCCGG TTCTGTTTTTTCTTT Cphamn1_0270 261683 - 262900 + | hypothetical protein TERM 287 262965 - 262926 - T 100 -18 -4.07687 | opp_overlap 262926 262931, overlap 262931 ACTTGCTTCTTAAAA GAAAAGCCGTTCATCTGC TCTT GCTGGTGAACGGCTTTTC TTTTCGTGCTGAAAC TERM 288 262926 - 262965 + T 100 -20.2 -4.30576 | opp_overlap 262926 262931, overlap 262931 ACTTGCTTCTTAAAA GAAAAGCCGTTCATCTGC TCTT GCTGGTGAACGGCTTTTC TTTTCGTGCTGAAAC TERM 289 262931 - 262960 + T 100 -14.3 -5.14626 | opp_overlap 262931 262926, overlap 262926 CTTCTTAAAAGAAAA GCCGTTCATCTGC TCTT GCTGGTGAACGGC TTTTCTTTTCGTGCT TERM 290 262960 - 262931 - T 100 -12.1 -5.07652 | opp_overlap 262926 262931, overlap 262926 CTTCTTAAAAGAAAA GCCGTTCATCTGC TCTT GCTGGTGAACGGC TTTTCTTTTCGTGCT Cphamn1_0271 263239 - 263018 - | hypothetical protein TERM 291 264060 - 264074 + G 70 -4.2 -4.63218 | opp_overlap 264059, overlap 264059 GTTGAAGCTGAAGAC CAGAAC CAG GATCTG TTTTATTACAAGGCC Cphamn1_0272 263451 - 264983 + | hypothetical protein TERM 292 265001 - 265017 + T 76 -2.9 -5.27335 | overlap 265002 CCCTCGCGTGATTTA TTGAGAG TTT CCCTCAG TTTTTATTTCGGGCA Cphamn1_0273 265621 - 264998 - | hypothetical protein Cphamn1_0274 265858 - 266634 + | short-chain dehydrogenase/reductase SDR TERM 293 266820 - 266834 + G 76 -2.8 -5.14563 | GATCATTTTCGTTGT CCTGTA TGT TATGGG TTTTTTCATGAGGGG Cphamn1_0275 266746 - 267387 + | Isoprenylcysteine carboxyl methyltransferase Cphamn1_0276 267461 - 268339 + | alpha/beta hydrolase fold Cphamn1_0277 268336 - 268677 + | protein of unknown function DUF156 Cphamn1_0278 268720 - 270045 + | outer membrane efflux protein Cphamn1_0279 270075 - 270455 + | hypothetical protein TERM 294 271910 - 271930 + G 87 -4.6 -5.51046 | opp_overlap 271898, overlap 271914 TGAGTCCGATGCCCA TCGGGGCG TCGCT CGCCATGA TTTTTTCTCTCTTTG Cphamn1_0280 270469 - 273681 + | acriflavin resistance protein Cphamn1_0281 273712 - 274017 + | hypothetical protein Cphamn1_0282 274022 - 274663 + | beta-lactamase domain protein Cphamn1_0283 275144 - 275590 + | putative signal-transduction protein with CBS domains TERM 295 276123 - 276170 + G 80 -4.2 -5.10461 | gap 1, overlap 276103 GCGGACAAGACCGGG CACACTATTCTGCAGAGTCT-CT ATG AGCAGTGTCTTCAGAAAGGTGTG TTTTTCTTCAATGAA TERM 296 276974 - 276956 - g 77 -11.8 -3.04144 | overlap 276958 GTTCGAGCCGGAAGA GATCTCTG ACG CAGAGATC AAGGCGACCGAGGAG Cphamn1_0284 275721 - 277424 + | succinate dehydrogenase or fumarate reductase, flavoprotein subunit Cphamn1_0285 277550 - 278584 + | succinate dehydrogenase and fumarate reductase iron-sulfur protein TERM 297 278663 - 278640 - g 70 -8.2 -3.80461 | GAATCCATGACCAAA GAGGTCGATA AATC TATTGACCTC TGGCAGAAAGACCTT Cphamn1_0286 278589 - 279437 + | CoB--CoM heterodisulfide reductase TERM 298 279514 - 279501 - f 79 -6.7 -4.63184 | opp_overlap 279501 279508, overlap 279488 AAGCTATTTTAAAAA CGCTT AAAA AAGCG TAGCTTTGCTCTTTA Cphamn1_0287 279609 - 280664 + | uroporphyrinogen decarboxylase TERM 299 280697 - 280724 + F 100 -10.6 -6.60239 | TTTTCTCTCCGTCAA CTCCGCTGTACG TAAG TGTAAAGCGGAG TTTTTTTTTGTTTTT Cphamn1_0288 280802 - 281620 + | Ion transport protein Cphamn1_0289 282499 - 281630 - | UspA domain protein TERM 300 282403 - 282417 + g 70 -3.4 -4.89852 | TCACATGGAACAGAT GCAGTG CTG CGCCGC TTTTTCTCGCTATAC TERM 301 282658 - 282713 + H 77 -11.2 -2.52464 | gap 1 CTGTAACTGCATGGA TGCCGTATCGAGTGCAGCATGACTTTC CAG GGGGGG-ATGCCGCGCTTGATGCGGCA TCCATTACGGAGGCC Cphamn1_0290 282921 - 283532 + | phosphoheptose isomerase Cphamn1_0291 283570 - 284037 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 302 284418 - 284434 + G 70 -10.1 -3.28712 | CCGCTCGATTGCGTC TGCCTGG CCT CCGGGCA TTCTAAGCAGAGGGC TERM 303 284451 - 284467 + G 76 -2.9 -5.09225 | overlap 284437 TCTAAGCAGAGGGCT CAGGTTC TCG GTACTTG TTTTTTCCATGACAT Cphamn1_0292 284146 - 284625 + | putative transmembrane protein TERM 304 285285 - 285310 + G 73 -5.5 -4.62336 | gap 1, overlap 285267 285266 285308 TGGGCAAGCGCTTCT GCGTGCATAG CGCATGC CTATGC-CGC TTTTTCCGGTACCGT Cphamn1_0293 284622 - 285632 + | alkylhydroperoxidase like protein, AhpD family Cphamn1_0294 286339 - 285629 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 305 285959 - 285971 + g 76 -7.7 -4.386 | overlap 285953 CATCAGAAGGCTTTT CAGAG CTT CTCTG TTTTGTCCCCGCTTG TERM 306 286386 - 286376 - R 91 -8.2 -5.2696 | opp_overlap 286376 286382 TTAAAAGTCAAAAAA GCCG CAC CGGC TACTCTCCGGCTTCC Cphamn1_0295 287746 - 286427 - | threonine synthase TERM 307 286942 - 286953 + g 100 -5.8 -5.75342 | CGATGAAATGTGCGA TGGG AAAC CCCA TTTTTTTTGCAAGGA Cphamn1_0296 288720 - 287758 - | homoserine kinase TERM 308 287980 - 287990 + g 71 -6.8 -4.13767 | opp_overlap 287973 287971 287972 287982 ATAAAAGCCCGGAAT GAGC GGA GCTC TTTTCGGCTCGGCGA TERM 309 288408 - 288425 + g 70 -11.3 -2.55505 | overlap 288407 288406 CGGCACTGCTTCCCA TGCCGCT GCTG AGCGGCA GATTCTTTTTCAGTT TERM 310 289783 - 289816 + G 80 -2.3 -5.38951 | gap 1, overlap 289786 289787 TCTCTTCTTCTTCGT CGTCCGCCGGGACGTG AAG CCTATCCTGGCG-ATG TTTTTTATCTCCATT Cphamn1_0297 288943 - 290523 + | ATP synthase F1, alpha subunit Cphamn1_0298 290569 - 291456 + | ATP synthase F1, gamma subunit TERM 311 291481 - 291502 + F 100 -17.3 -6.30182 | GACAGCTTTTTTCAG GCGCCCCGA CGAA TCGGGGCGC TTTTTTTTTGTATGA TERM 312 292478 - 292466 - g 77 -10.5 -3.54129 | overlap 292455 292448 292453 TACAGGCTCCGGAAA GCCGG TGA CCGGC CTCAGCTCAATCAAT Cphamn1_0299 291552 - 294011 + | aspartate kinase TERM 313 294594 - 294580 - g 70 -2.1 -5.04597 | gap 1 ACTCACACATAAAAA CAACCG GTAT CGGT-G AGGCATCCCTGGCGA Cphamn1_0300 294021 - 295283 + | competence/damage-inducible protein CinA Cphamn1_0301 295803 - 295273 - | hypothetical protein TERM 314 296951 - 296982 + G 100 -4.4 -6.11644 | opp_overlap 296958 GAAACGCTTTTCGAT TTCAGAAGCTCG GACATGCA CGAGCGCCTGAA TTTTTTTTTCGGTGA Cphamn1_0302 296357 - 298231 + | DNA mismatch repair protein MutL TERM 315 298357 - 298371 + T 100 -7.1 -5.86061 | overlap 298349 GTACCCTCGCCAAGC TGCCG TTTAC CGGCA TTTTTTTTGCTCGAC TERM 316 298392 - 298441 + T 100 -12.4 -4.41348 | gap 1, opp_overlap 298392 298409, overlap 298400 298409 TTTGCTCGACATACA GGTCAATTGCAGAAAAAGCAGGA GATCA TCCTGCTTTTTCTGCT-TTGGCA TTTCTTTCAGGAACA TERM 317 298441 - 298392 - T 73 -10.2 -2.98823 | gap 1, opp_overlap 298392 298400 298409, overlap 298409 TTTGCTCGACATACA GGTCAATTGCAGAAAAAGCAGGA GATCA TCCTGCTTTTTCTGCT-TTGGCA TTTCTTTCAGGAACA TERM 318 298400 - 298434 + T 100 -20.3 -3.78141 | opp_overlap 298392 298409, overlap 298392 298409 ACATACAGGTCAATT GCAGAAAAAGCAGGA GATCA TCCTGCTTTTTCTGC TTTGGCATTTCTTTC TERM 319 298409 - 298425 + T 87 -8 -5.04325 | opp_overlap 298392 298409, overlap 298400 298392 TCAATTGCAGAAAAA GCAGGA GATCA TCCTGC TTTTTCTGCTTTGGC TERM 320 298425 - 298409 - T 86 -8 -4.87786 | opp_overlap 298409 298400 298392, overlap 298392 TCAATTGCAGAAAAA GCAGGA GATCA TCCTGC TTTTTCTGCTTTGGC Cphamn1_0303 298995 - 298465 - | hypothetical protein TERM 321 298736 - 298756 + g 72 -9.7 -3.4252 | opp_overlap 298738 GCAGGTGGTGTAAGG GAGTGGCAG GAG CTGCAACTC TTATGATAGATGGCC TERM 322 298784 - 298803 + g 83 -5.6 -5.1287 | overlap 298787 GCCTCAGCTTTCTCG GCGGCTGC CTGA GCAGCTTC TTTTTTCGCTATGGC TERM 323 298787 - 298800 + g 86 -8.1 -4.65666 | overlap 298784 TCAGCTTTCTCGGCG GCTGC CTGA GCAGC TTCTTTTTTCGCTAT TERM 324 299075 - 299046 - R 80 -10.8 -3.41839 | overlap 299048 GATATATAGTTATAA GACTCTGCAGCA GAAAAT TGCTGCAGAGTG CAAACGATGCGCTCG TERM 325 299073 - 299048 - R 91 -13.4 -3.27436 | overlap 299046 TATATAGTTATAAGA CTCTGCAGCA GAAAAT TGCTGCAGAG TGCAAACGATGCGCT Cphamn1_0304 300093 - 299323 - | Diaminopimelate epimerase TERM 326 300156 - 300183 + H 80 -12.1 -2.97902 | TTTTTGGATTCAGCC CTGACAGTGAC CGTTTT GTCACTGTCGG TATCTCCTGCTATTA TERM 327 300237 - 300204 - H 74 -10.3 -3.27475 | gap 1, opp_overlap 300209, overlap 300202 300207 CCTGCTATTATAACA GATC-GGCTTGTCGCG GAA CGCGACAAGCTTGCTC AAAAATATTTATTAT TERM 328 300233 - 300207 - H 74 -10.8 -2.51872 | opp_overlap 300209, overlap 300204 300202 GCTATTATAACAGAT CGGCTTGTCGCG GAA CGCGACAAGCTT GCTCAAAAATATTTA TERM 329 300209 - 300231 + H 100 -17.8 -3.15427 | opp_overlap 300207 300204 300202 TATTATAACAGATCG GCTTGTCGCG GAA CGCGACAAGC TTGCTCAAAAATATT TERM 330 300245 - 300260 + H 100 -3.4 -5.86465 | opp_overlap 300243 300245, overlap 300243 GCTTGCTCAAAAATA TTTATT ATTA AATAAA TTTTTTTATCTTATT TERM 331 300655 - 300669 + G 70 -4.2 -4.66537 | TAAAGAAAAGGATGC CGCC AAAATGA GGCG TTTTCTGTTCCAGCG Cphamn1_0305 300524 - 302725 + | photosystem P840 reaction center, large subunit TERM 332 302765 - 302737 - f 95 -13.1 -3.34043 | opp_overlap 302737 302740, overlap 302740 CTGATGATCTGAGAA GAAGGAGCCGTCC ACT GTGCGGCTCCTTC TTCTCACAGTCATCA TERM 333 302737 - 302765 + F 100 -15.3 -3.31792 | opp_overlap 302737 302740, overlap 302740 CTGATGATCTGAGAA GAAGGAGCCGTCC ACT GTGCGGCTCCTTC TTCTCACAGTCATCA TERM 334 302762 - 302740 - f 77 -9 -3.81 | opp_overlap 302737 302740, overlap 302737 ATGATCTGAGAAGAA GGAGCCGTCC ACT GTGCGGCTCC TTCTTCTCACAGTCA TERM 335 302740 - 302762 + F 91 -11.2 -3.79906 | opp_overlap 302740 302737, overlap 302737 ATGATCTGAGAAGAA GGAGCCGTCC ACT GTGCGGCTCC TTCTTCTCACAGTCA Cphamn1_0306 302827 - 303525 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 336 303555 - 303576 + F 100 -12.3 -5.85737 | opp_overlap 303555 CAACACATTATCAAA GCATTGCCC TTGT GGGCAGTGC TTTTTTTATTGCTAT TERM 337 303576 - 303555 - f 80 -10.1 -3.8448 | opp_overlap 303555 CAACACATTATCAAA GCATTGCCC TTGT GGGCAGTGC TTTTTTTATTGCTAT Cphamn1_0307 303613 - 304359 + | Dolichyl-phosphate beta-D-mannosyltransferase Cphamn1_0308 306521 - 304440 - | small GTP-binding protein TERM 338 307731 - 307747 + G 70 -2.9 -4.83615 | overlap 307733 CGGTTCACGCGTGCA GCTTGTC GGG GACGATC TTTTTGTCACCAATA Cphamn1_0309 306772 - 308085 + | Phosphopyruvate hydratase Cphamn1_0310 308249 - 308545 + | Septum formation initiator TERM 339 308584 - 308620 + F 75 -5.1 -4.83615 | overlap 308588 GATCCGCAATGCACG TTTTCTTGACAGGGGAG CCT TTCTCCCGTCAAGTCAA TTTTTATCAGACCTG TERM 340 308588 - 308616 + F 72 -10.3 -2.88667 | overlap 308584 CGCAATGCACGTTTT CTTGACAGGGGAG CCT TTCTCCCGTCAAG TCAATTTTTATCAGA Cphamn1_0311 308651 - 310711 + | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Cphamn1_0312 310730 - 311515 + | short-chain dehydrogenase/reductase SDR Cphamn1_0313 312038 - 312229 + | preprotein translocase, SecE subunit TERM 341 312485 - 312475 - g 78 -2.4 -5.25803 | opp_overlap 312475 AAGTCTTACAAAAAA CGCG TTT CCCG GTTATGTGCTTATTG Cphamn1_0314 312254 - 312835 + | NusG antitermination factor Cphamn1_0315 312878 - 313303 + | ribosomal protein L11 TERM 342 313415 - 313400 - g 76 -7.6 -4.34932 | AAAGAAATACAGAAA CGCTTT AGGT AAAGCG TCAGCTCAGGATGAG Cphamn1_0316 313377 - 314066 + | ribosomal protein L1 Cphamn1_0317 314084 - 314605 + | ribosomal protein L10 TERM 343 314774 - 314785 + G 82 -7.2 -4.60487 | overlap 314773 AGTTTGGGGTAAGTG CCGC TCCT GCGG TTTTTGCCGGTGCTG Cphamn1_0318 314674 - 315054 + | ribosomal protein L7/L12 TERM 344 315077 - 315117 + F 91 -11.4 -3.87869 | opp_overlap 315085, overlap 315079 315085 TCAAGCGTTGATTTT CA-GCACAAGCTCCGTTTCG GCA TGAAGCGGAGCTT-TGCCTG TTTGTAAGCGCTTGA TERM 345 315079 - 315114 + F 87 -14.2 -2.71125 | gap 1, opp_overlap 315085, overlap 315077 315085 AAGCGTTGATTTTCA GCACAAGCTCCGTTTCG GCA TGAAGCGGAGCTT-TGC CTGTTTGTAAGCGCT TERM 346 315085 - 315109 + F 100 -12.9 -3.83324 | opp_overlap 315085, overlap 315079 315077 TGATTTTCAGCACAA GCTCCGTTTCG GCA TGAAGCGGAGC TTTGCCTGTTTGTAA TERM 347 315109 - 315085 - f 76 -10 -3.41051 | opp_overlap 315085 315079 315077 TGATTTTCAGCACAA GCTCCGTTTC GGCAT GAAGCGGAGC TTTGCCTGTTTGTAA TERM 348 316117 - 316107 - g 70 -8.2 -3.80573 | overlap 316072 GTCAGGATCATGAAA CCCG GTA CGGG CGAGAAGGGACTCGA TERM 349 316451 - 316494 + G 77 -11.2 -3.35934 | opp_overlap 316453, overlap 316452 TTCAGACGAGCCGAT AAGCGATGATATCATGGTGT TGAC ACACTATGATATCATTGCGG TTATCAACTATCTCA TERM 350 316452 - 316493 + G 83 -14.7 -2.61239 | opp_overlap 316453, overlap 316451 TCAGACGAGCCGATA AGCGATGATATCATGGTGT TGAC ACACTATGATATCATTGCG GTTATCAACTATCTC TERM 351 316492 - 316453 - g 84 -13.8 -3.3452 | opp_overlap 316452 316451 CAGACGAGCCGATAA GCGATGATATCATGGTGT TGAC ACACTATGATATCATTGC GGTTATCAACTATCT TERM 352 316797 - 316769 - g 71 -7.4 -4.0942 | opp_overlap 316793, overlap 316770 316784 316793 CATGGATCAGACAAA CCCGCTTGCCGA AATGA CCAACAAGCGGA GGGTTTCCGCTCTTG TERM 353 317140 - 317129 - g 71 -5.8 -4.32177 | opp_overlap 317129 317139, overlap 317110 TCAGGCGAGAACAAA GGGT GATT ACCC TGTCGTTGACGCCGA TERM 354 318661 - 318684 + G 70 -4.6 -4.72272 | opp_overlap 318679 GGGCTGCAAGGGCAC TCGGTGTT CAGTTTAA AACGCCGA TTTTTGATGGCGCAA TERM 355 319073 - 319094 + G 78 -10.1 -3.86916 | opp_overlap 319068 AGGCCAGAATCTTCC CGATCCCGG AACG CCGGAATCG TTTAATGTGCTGGTC Cphamn1_0319 315255 - 319163 + | DNA-directed RNA polymerase, beta subunit TERM 356 319255 - 319271 + G 90 -9.5 -4.58395 | overlap 319249 TTTTCACAGGGAGTT TCACCTT TCA AAGGTGA TTTTTCAAAGATAAA TERM 357 319683 - 319668 - g 71 -10.4 -3.14564 | CTATGTGGTGATCAA TCCCGG TGAA CCGGGA GAGAAGCAGGGAATA TERM 358 322361 - 322334 - g 77 -10.6 -3.55563 | ACGGCATGCCTGAAA CCGTTACTCTGG TGAT CCAGAAGAACGG CAAGATCAATATTCT TERM 359 323379 - 323368 - g 74 -4.4 -4.84311 | CGTGAGATAATAAAA CTCA ACCG TGAG CTTCGCAGAAACAGC Cphamn1_0320 319234 - 323730 + | DNA-directed RNA polymerase, beta' subunit TERM 360 323996 - 323963 - T 72 -7.4 -4.07568 | gap 1, overlap 323965 GGGCTTTCGGTAAAA GATG-GATCCCCGGG TCAAG CCCGGGGATGACAAC CAGGAGGGATGCCGC TERM 361 323994 - 323965 - T 72 -8.6 -3.63744 | gap 1, overlap 323963 GCTTTCGGTAAAAGA TG-GATCCCCGGG TCAAG CCCGGGGATGACA ACCAGGAGGGATGCC TERM 362 324065 - 324031 - T 72 -7.1 -4.07687 | opp_overlap 324034, overlap 324033 324034 324036 ATTTCCTGCTCAAAA TACGAGAGGCTGCCC TTTTG AGACAGCCTCTCTTT TTTTTGTCGAGGTTT TERM 363 324063 - 324033 - T 77 -9.7 -3.63744 | opp_overlap 324034, overlap 324031 324034 324036 TTCCTGCTCAAAATA CGAGAGGCTGCCC TTTTG AGACAGCCTCTCT TTTTTTTGTCGAGGT TERM 364 324062 - 324034 - T 85 -13.2 -2.78032 | opp_overlap 324034, overlap 324033 324031 324036 TCCTGCTCAAAATAC GAGAGGCTGCCC TTTTG AGACAGCCTCTC TTTTTTTTGTCGAGG TERM 365 324034 - 324062 + T 100 -10.3 -5.93809 | opp_overlap 324034 324033 324031 324036 TCCTGCTCAAAATAC GAGAGGCTGCC CTTTTGA GACAGCCTCTC TTTTTTTTGTCGAGG TERM 366 324060 - 324036 - T 72 -10 -2.93623 | opp_overlap 324034, overlap 324034 324033 324031 CTGCTCAAAATACGA GAGGCTGCCC TTTTG AGACAGCCTC TCTTTTTTTTGTCGA Cphamn1_0321 325423 - 324080 - | acetyl-CoA carboxylase, biotin carboxylase TERM 367 324628 - 324660 + g 93 -8.3 -5.12971 | CGCCCTCATAGTTTA TGGCTGCGGCTGCGG CCA CTGCGGCTTCACCCA TTTTTCTTCGCTGTT Cphamn1_0322 325915 - 325442 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein Cphamn1_0323 326667 - 325966 - | translation elongation factor P Cphamn1_0324 326751 - 327023 + | histone family protein DNA-binding protein TERM 368 327065 - 327090 + F 100 -9.7 -5.60993 | TTCGCTGCTTTTATA GTCCATCCAGC CTCC GCTTGATGGGC TTTTTTTATAAAAAA Cphamn1_0325 327119 - 328126 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 369 328280 - 328250 - T 100 -12.6 -5.31275 | opp_overlap 328253 328257, overlap 328251 328253 328257 GTTCACGAGAAAAAA GTAGAAAGCCGGCT CCA AGCCGGCTTTCTTT ATTGCTGTTTCAAAG TERM 370 328279 - 328251 - T 100 -16.1 -3.78042 | opp_overlap 328253 328257, overlap 328250 328253 328257 TTCACGAGAAAAAAG TAGAAAGCCGGCT CCA AGCCGGCTTTCTT TATTGCTGTTTCAAA TERM 371 328277 - 328253 - T 100 -18.7 -3.46407 | opp_overlap 328253 328257, overlap 328251 328250 328257 CACGAGAAAAAAGTA GAAAGCCGGCT CCA AGCCGGCTTTC TTTATTGCTGTTTCA TERM 372 328253 - 328277 + T 100 -18.7 -4.36433 | opp_overlap 328253 328251 328250 328257, overlap 328257 CACGAGAAAAAAGTA GAAAGCCGGCT CCA AGCCGGCTTTC TTTATTGCTGTTTCA TERM 373 328257 - 328273 + T 100 -13.7 -4.71791 | opp_overlap 328253 328251 328250 328257, overlap 328253 AGAAAAAAGTAGAAA GCCGGCT CCA AGCCGGC TTTCTTTATTGCTGT TERM 374 328273 - 328257 - T 100 -13.7 -4.33146 | opp_overlap 328257 328253, overlap 328253 328251 328250 AGAAAAAAGTAGAAA GCCGGCT CCA AGCCGGC TTTCTTTATTGCTGT Cphamn1_0326 329336 - 328308 - | thiamine pyrophosphate protein domain protein TPP-binding TERM 375 328841 - 328827 - G 78 -10 -3.86015 | GACTCTTGCCACAAA GGTTCC GCC GGAACC CAGTGTCAGTGCAAG Cphamn1_0327 331283 - 329340 - | pyruvate flavodoxin/ferredoxin oxidoreductase domain protein TERM 376 330419 - 330431 + g 100 -6.9 -5.40072 | opp_overlap 330408 330417 330419 AGGAGCCGAGGAACA GCTGG ATG CCGGC TTTTTTTGCAGCAGC TERM 377 331340 - 331363 + r 74 -8.2 -4.07885 | opp_overlap 331340 ACGGAGGGTTGAAAA CCTGAATCGA TTGT TCAATTCAGG TTTTCAGCAAAGCTA TERM 378 331363 - 331340 - R 82 -10.4 -4.09864 | opp_overlap 331340 ACGGAGGGTTGAAAA CCTGAATCGA TTGT TCAATTCAGG TTTTCAGCAAAGCTA Cphamn1_0328 331684 - 331415 - | hypothetical protein Cphamn1_0329 332565 - 331897 - | hypothetical protein TERM 379 332111 - 332125 + g 70 -4.9 -4.63586 | overlap 332112 ATTTTGCCGAGTATT TCCGC CATGA GCGGG TTTTCTATATGCTGT TERM 380 332347 - 332367 + g 73 -5.5 -4.5954 | TTTTGAGCTTACCAG GTTATCAAT GTA GTTGATGAC TTTTCTCTGCTGTGA TERM 381 332529 - 332503 - G 100 -5.3 -5.86061 | GTTTATTAAAAAAAA GTGAAAACA TGAAGCTAT TGTTTTCAC GACTGCCTGCAGATC TERM 382 332837 - 332818 - g 86 -8.6 -4.65933 | opp_overlap 332828 TATTTTGAAAAGAAA GAACACAC GATC GTGCGTTC CGCGCCGGTGATTCC TERM 383 335038 - 335022 - g 82 -6.6 -4.84017 | AATTCTCGACAAAAA GCTTCA GGATA TGAAGC TCTCACTGCTTCTGG Cphamn1_0330 332767 - 335427 + | alanyl-tRNA synthetase Cphamn1_0331 335440 - 335934 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_0332 336992 - 336186 - | short-chain dehydrogenase/reductase SDR TERM 384 337994 - 338015 + G 70 -10.1 -3.2375 | opp_overlap 337991 337994, overlap 337990 GAGGGAGATAAAGGA GGGCGGACA TTCC TGTCCGCCA TTACATTCTGAACTC Cphamn1_0333 337284 - 338927 + | N-6 DNA methylase TERM 385 338995 - 338968 - g 74 -2.6 -5.14563 | opp_overlap 338938 338991, overlap 338969 338973 TCCGCGATTAAAAAA CTCAAGCGGGTT GGAA AACCCGCCCTAC GTTGAAGGTGATTCT TERM 386 338990 - 338973 - g 79 -11.3 -3.53783 | opp_overlap 338938, overlap 338969 338968 GATTAAAAAACTCAA GCGGGTT GGAA AACCCGC CCTACGTTGAAGGTG TERM 387 339614 - 339584 - g 73 -3.2 -5.05782 | ACCGAGCTGAAAAAA GCCCTCATGCACAA GCT TTTCACAGAAGGGC TGCGCAACGAACCGC TERM 388 340144 - 340126 - g 86 -6 -5.17576 | GATCAATGCAAAAAA GAAGTCTC TCC AAGACCTC TTCCACACACTACTT Cphamn1_0334 338924 - 340216 + | restriction modification system DNA specificity domain TERM 389 340411 - 340394 - g 70 -9.9 -3.27177 | overlap 340392 GGGAAAACCAAGACA TCAGGTC ACAC GACCTGA ATAACAAAGCTGTTA TERM 390 341324 - 341314 - g 73 -3.2 -4.99947 | overlap 341318 TTGAATGAAATAAAA CGAA GCT CTCG ACCGAAAGCAATCAT Cphamn1_0335 340213 - 341988 + | hypothetical protein Cphamn1_0336 341981 - 343405 + | Piwi domain protein TERM 391 343543 - 343520 - g 81 -5.8 -5.03715 | opp_overlap 343523, overlap 343521 343523 343524 AGGAGGCCGAAAAAA GGAGGGCGGG TTTT CCAACCCGCC ATTACATTCAAAGTG TERM 392 343544 - 343523 - g 72 -10.1 -3.38056 | opp_overlap 343523, overlap 343520 343521 343524 AGGCCGAAAAAAGGA GGGCGGGTT TTCC AACCCGCCA TTACATTCAAAGTGG TERM 393 343543 - 343524 - g 78 -13.6 -2.62111 | opp_overlap 343523, overlap 343520 343523 343521 GGCCGAAAAAAGGAG GGCGGGTT TTCC AACCCGCC ATTACATTCAAAGTG TERM 394 343593 - 343572 - g 100 -10.1 -4.78572 | overlap 343573 TGGCAAGCAAGAAAA TGGCGGACA GGAA TGTCCGCCC TCCGGTAAAGAATCT TERM 395 343592 - 343573 - g 84 -13.6 -3.4642 | overlap 343572 GGCAAGCAAGAAAAT GGCGGACA GGAA TGTCCGCC CTCCGGTAAAGAATC TERM 396 344016 - 344035 + G 71 -5 -4.56597 | gap 1 CCGTGAAACCCCCGA GCTGTT-CG TGC CGCAGCAGC TTTTTACCGCCACCG TERM 397 344182 - 344165 - g 82 -11.3 -3.69621 | opp_overlap 344163 ATTCAGAATTGGAAA GCGGACA TTCC TGTCCGC CATTACATTCAGAAT TERM 398 344221 - 344204 - g 82 -11.3 -3.69621 | opp_overlap 344202, overlap 344198 344197 ATTCAGAATTGGAAA GCGGACT TTCC AGTCCGC CATTACATTCCGACA TERM 399 344286 - 344313 + G 77 -9.8 -3.66178 | opp_overlap 344277 344275 344286 344289 344290, overlap 344289 AAAAGACGCTGAAGA GAATGGCGGACA GGAA TGTCCGCCCTCC TTTGACGTTGAAGAG TERM 400 344313 - 344286 - g 77 -12 -3.07431 | opp_overlap 344286 344289, overlap 344277 344275 344289 344290 AAAAGACGCTGAAGA GAATGGCGGACA GGAA TGTCCGCCCTCC TTTGACGTTGAAGAG TERM 401 344310 - 344289 - g 77 -10.1 -3.67052 | opp_overlap 344289 344286, overlap 344286 344277 344275 344290 AGACGCTGAAGAGAA TGGCGGACA GGAA TGTCCGCCC TCCTTTGACGTTGAA TERM 402 344309 - 344290 - g 79 -13.6 -2.79749 | opp_overlap 344289 344286, overlap 344289 344286 344277 344275 GACGCTGAAGAGAAT GGCGGACA GGAA TGTCCGCC CTCCTTTGACGTTGA TERM 403 344355 - 344328 - g 77 -12 -3.04144 | opp_overlap 344328 344331, overlap 344331 344332 CTTTGACGTTGAAGA GAATGGCGGGTT GGAA AACCCGCCCTCC TTTCTTGACCCGGAG TERM 404 344328 - 344355 + G 83 -9.8 -4.15044 | opp_overlap 344328 344331 344332, overlap 344331 CTTTGACGTTGAAGA GAATGGCGGGTT GGAA AACCCGCCCTCC TTTCTTGACCCGGAG TERM 405 344352 - 344331 - g 77 -10.1 -3.66784 | opp_overlap 344328 344331, overlap 344328 344332 TGACGTTGAAGAGAA TGGCGGGTT GGAA AACCCGCCC TCCTTTCTTGACCCG TERM 406 344351 - 344332 - g 79 -13.6 -2.79749 | opp_overlap 344331 344328, overlap 344331 344328 GACGTTGAAGAGAAT GGCGGGTT GGAA AACCCGCC CTCCTTTCTTGACCC TERM 407 344916 - 344937 + G 70 -10.1 -3.28204 | opp_overlap 344913 344914 GAATCCAATAAAGGG GGGCGGACT TTCC AGTCCGCCA TTACATTCTGATTTT TERM 408 345072 - 345051 - g 100 -10.1 -5.00616 | opp_overlap 345051, overlap 345052 GCTGTTCGGAAAAAA TGGCGGACA GGAA TGTCCGCCC TCCGTTCCCGGTCGT TERM 409 345071 - 345052 - g 86 -13.6 -3.60048 | opp_overlap 345051, overlap 345051 CTGTTCGGAAAAAAT GGCGGACA GGAA TGTCCGCC CTCCGTTCCCGGTCG TERM 410 345375 - 345351 - g 76 -8.6 -4.13014 | opp_overlap 345315 GCCAGAGGCGGAAAA GCCGACCATC CTTTT GATGATCGAC CGGAACGAGCTGGAA TERM 411 345914 - 345896 - g 73 -5.2 -4.6759 | AAGAGCTGAACAAAA TTCTCGAC CGG GCCGTGAA CCTGAAGAACTTTCT TERM 412 346647 - 346626 - g 72 -10.1 -3.34455 | opp_overlap 346624 346627, overlap 346621 TGAGGATAAATGTAA TGGCGGACT GGAA AGTCCGCCC CCCTTTACGTTCAAC Cphamn1_0337 343420 - 347457 + | type I site-specific deoxyribonuclease, HsdR family Cphamn1_0338 347461 - 347769 + | protein of unknown function DUF45 Cphamn1_0339 348205 - 348552 + | transcriptional regulator, XRE family TERM 413 349721 - 349705 - T 74 -7.9 -4.09864 | AGGCATGTGCGAAAA GCGCATC CAT GAAGCGC GGGCGTGCCGAAACC TERM 414 350275 - 350319 + T 87 -13.8 -3.07895 | gap 1 ACTTAACCTGATGAT G-GATGCTGCCCTGTGTAATA TTAT TATTACACGGGGCGGCATGAC TATCTTCCCCATAGC Cphamn1_0341 351650 - 350412 - | phosphoserine phosphatase SerB TERM 415 351196 - 351207 + g 71 -5.8 -4.37092 | AAGGAGAACTCTATG CACG CTTT CGTG TTTTCTGCAAGACGT Cphamn1_0342 353191 - 351647 - | GMP synthase, large subunit TERM 416 352730 - 352762 + g 100 -18.6 -2.72558 | overlap 352756 TTCAATCGCGCACAT TTCCGAGTTGCCGC TGCTT GCGGTAACTCGGAA TCCTTCCGGCATTCT Cphamn1_0343 355541 - 353217 - | penicillin-binding protein, 1A family TERM 417 353652 - 353665 + g 73 -5.9 -4.57341 | overlap 353662 GGCATCCTTCAGGTT CTGGG TGGT CCCGG TTTTTCCGCCGGATT Cphamn1_0344 356464 - 355538 - | alpha/beta hydrolase fold TERM 418 356360 - 356386 + g 73 -5.1 -4.65895 | opp_overlap 356356 CCGCGAAGAAATGGC CCAGCCGTT GACAAACAG AACGGCAGG TTTTTCCCTGAGGGC TERM 419 356392 - 356405 + g 76 -8.1 -4.17762 | GAACGGCAGGTTTTT CCCTG AGGG CAGGG TTGTTTTCCGCCGTG Cphamn1_0345 356872 - 357342 + | transcription activator effector binding Cphamn1_0346 357617 - 359101 + | amine oxidase TERM 420 360332 - 360344 + G 70 -9.1 -3.61398 | GGAATCGGTGTGACC TCCGC AAA GCGGA TTGTTGCAGCGCGAA Cphamn1_0347 359303 - 360565 + | hypothetical protein Cphamn1_0349 361058 - 361789 + | hypothetical protein Cphamn1_0350 361810 - 362202 + | hypothetical protein Cphamn1_0351 362207 - 363034 + | dTDP-4-dehydrorhamnose reductase TERM 421 363048 - 363037 - f 70 -3 -4.89477 | GCCTGAAGAATAAAA GAAA ATGA TTTC AATTCAATAGAACAG TERM 422 363850 - 363871 + G 74 -8 -4.10161 | AAGCGACAGGGCGTT TCTTGCCG GTATCG CGGCGAGA TTTTAGGGCCTGATG Cphamn1_0352 363131 - 363877 + | hypothetical protein TERM 423 364155 - 364140 - g 87 -8.2 -4.82901 | opp_overlap 364148, overlap 364142 TTTTCGTCAGAAAAA GCGCCG AGGC CGACGC GGCTGTCGTAGAGTG TERM 424 364559 - 364540 - g 86 -13.6 -3.56092 | opp_overlap 364542 GGAGCATGTGCGAAA GACGCTCG ATAT CGAGCGTC TGCTGGAGATCGTGA Cphamn1_0353 363884 - 365254 + | cobyrinic acid a,c-diamide synthase Cphamn1_0354 365792 - 365322 - | hypothetical protein TERM 425 365744 - 365757 + g 100 -9.5 -4.96762 | opp_overlap 365742 TGTAGATGGAAAGCT CCCGG TGAA CCGGG TTTTTGTCGTCTATG TERM 426 367804 - 367836 + G 74 -4.2 -4.83615 | opp_overlap 367797 367809 367812, overlap 367812 GGACAAGAGCCGGAC TGAAAGACCCGG CAAGGCCGA TCGGTTCTTTCA TTTTTCTGGGGCCTA TERM 427 368333 - 368346 + G 86 -8.1 -4.74801 | opp_overlap 368332 ATTCCTTAACAGGAT CGACG ATAC CGTCG TTTTTCATCAGCTTG Cphamn1_0355 366156 - 368717 + | ATPase AAA-2 domain protein TERM 428 368751 - 368723 - T 100 -11.8 -5.85737 | opp_overlap 368723 AGATCAATAAAAAAA GCAGCCTCAC CACTCAAAT GTGAGGCTGC TTTTTTTTATGGCAA TERM 429 368723 - 368751 + T 100 -11.8 -5.93809 | opp_overlap 368723 AGATCAATAAAAAAA GCAGCCTCAC CACTCAAAT GTGAGGCTGC TTTTTTTTATGGCAA TERM 430 369052 - 369032 - T 77 -11.2 -2.6952 | overlap 369028 CAGTATAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGGAGAGACG Cphamn1_0356 370431 - 369040 - | pyridoxal-phosphate dependent TrpB-like enzyme TERM 431 369660 - 369670 + g 70 -8.2 -3.75115 | opp_overlap 369659 AGCCAATAACGATAT CCGG GTA CCGG TTGATTTTGTCGAAC TERM 432 371509 - 371526 + G 70 -9.1 -3.63895 | overlap 371512 CTGCAGCTGTTATGT CAGCCGC CCGG GCGGTTG TTTCCAATGATTCAG Cphamn1_0357 370824 - 371798 + | lipopolysaccharide heptosyltransferase II Cphamn1_0358 372916 - 371849 - | thiamine-monophosphate kinase Cphamn1_0359 372994 - 373938 + | signal recognition particle-docking protein FtsY TERM 433 373951 - 373939 - T 70 -10.5 -2.52464 | TTGCTGGGGAAGTGA GGGCC TTT GGCCC GGTGACAGTGACGGG TERM 434 374106 - 374086 - T 77 -11.2 -2.6952 | overlap 374082 CAGTATAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGGAGAGACG Cphamn1_0360 374884 - 374291 - | hypothetical protein TERM 435 374386 - 374366 - G 70 -10.5 -2.87463 | overlap 374370 AAGTTTTTCGAGACA GGAATCAAG GTC CCTGATTCC GAGAAGATGGGTCCC Cphamn1_0361 374949 - 375611 + | protein-L-isoaspartate O-methyltransferase TERM 436 376149 - 376136 - g 73 -5.3 -4.60041 | ATTGATCGTGAAAAA CTTGA CAGT TCAAG AATGGATCCTGAAAA Cphamn1_0362 375704 - 377809 + | PpiC-type peptidyl-prolyl cis-trans isomerase Cphamn1_0363 379590 - 377815 - | phosphoenolpyruvate-protein phosphotransferase TERM 437 377879 - 377849 - G 73 -11.2 -3.01712 | opp_overlap 377850 GCTGTTTCGGGAATA CGGTCTGCGTGAAA CTT TTTCAGGCAGACCT TTATTTTTGACGCTG TERM 438 377850 - 377878 + g 100 -14.7 -4.86385 | opp_overlap 377849 CTGTTTCGGGAATAC GGTCTGCGTGAAA CTT TTTCAGGCAGACC TTTATTTTTGACGCT TERM 439 379132 - 379144 + g 80 -3.3 -5.36441 | ATGCTTATGCAGGTT CCTGA TAA TCCGG TTTTTTATATCGACA Cphamn1_0364 381243 - 379663 - | replicative DNA helicase TERM 440 380792 - 380772 - G 70 -3.2 -4.84274 | overlap 380774 CAACGAGATCAAAAA CATCCAGC GCGGA GCCGTATG CTGCGCTGGAAATCA TERM 441 380802 - 380774 - G 71 -7.4 -4.02905 | overlap 380772 ACGAGATCAAAAACA TCCAGCGCGG AGCCGTATG CTGCGCTGGA AATCATCGATGAGAT Cphamn1_0365 381921 - 381295 - | phage SPO1 DNA polymerase-related protein TERM 442 381417 - 381397 - G 77 -12.7 -2.82516 | opp_overlap 381396 GGCCGCAGGATGATA GGTTACGAT GAC ATCGTAACC GTTCCATCGAATGAT TERM 443 381940 - 381958 + r 71 -2.4 -5.055 | overlap 381936 GTTATTACCTGTAAT GTTAACAT TAT ATGCTGAC TTTTTTCAGAGTTCG TERM 444 382140 - 382120 - R 77 -11.2 -2.65876 | overlap 382116 GAAAATTATAATGGA TTCCCGTG TCAAG CACGGGAA TGACCAGAGAAAGAT Cphamn1_0366 383427 - 382198 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase Cphamn1_0367 388068 - 383584 - | hypothetical protein TERM 445 387090 - 387112 + g 73 -3.2 -4.9792 | overlap 387092 TGAGATTGAGCAGCT CCCCCTGAAG CCG CAACAGGGAG TTTTTATGTGCGATG TERM 446 387420 - 387436 + g 95 -5.9 -5.40072 | AGAGTTTAGCCGAAC CTTTACG TAG TGTAAAG TTTTTTTGAGGAAGC TERM 447 388084 - 388095 + r 71 -4.4 -4.6971 | GAGTTTACTGTCTGT GCAT ATTC ATGC TTTTGTTCCGCTTTC TERM 448 388351 - 388337 - R 79 -7.8 -4.40003 | CCTGAGAAACAGAAA CCCGTA CTT CACGGG AAAAACCGGCATCCA TERM 449 388470 - 388525 + r 100 -19.4 -2.52464 | gap 1, opp_overlap 388483, overlap 388483 AATAAAGGCGATGGA TTCTCGTGTAAGACCTGTGAAAT-AGA AGC TCAGATTTCACGGGTCTTACGCGGGAA TGACTTAAAAAAAGA Cphamn1_0368 389363 - 388875 - | rfaE bifunctional protein TERM 450 389122 - 389147 + g 100 -4.7 -5.72207 | gap 1, opp_overlap 389114 389111 GAAAGTACCGCGCAG CGTTCGG-CG ACGGTCA CGACCGGACG TTTTTTTCCTTTCAG TERM 451 389334 - 389345 + g 70 -2.2 -5.02323 | GTCTCTCGCAGCTTC CTGT GACA GCAG TTTTCTTTCTGATGG Cphamn1_0369 389634 - 390542 + | lipid A biosynthesis acyltransferase TERM 452 391064 - 391082 + G 79 -7.4 -4.46854 | opp_overlap 391063 TTGAAGATATCATAC GGAAGGAG GAG CTGCTTCC TTTATTGTTCAGTGA Cphamn1_0370 390748 - 391752 + | lipopolysaccharide biosynthesis protein TERM 453 392145 - 392164 + G 100 -3.5 -6.21477 | AGATAACAAAAGCTG CGGCACT CTATGC GGTGCTG TTTTTTTTTACTCTT Cphamn1_0371 391883 - 393697 + | polysaccharide biosynthesis protein CapD TERM 454 393746 - 393768 + T 74 -6.9 -4.30559 | overlap 393731 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_0372 395324 - 393927 - | hypothetical protein TERM 455 393993 - 394007 + g 70 -8.6 -3.73072 | opp_overlap 393993 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT TERM 456 395811 - 395836 + G 95 -5.3 -5.63103 | overlap 395792 TGGTGATCCTGATCA GCAGACGCTTG TTGT CTGGGGTCTGC TTTTTTTGCTTGGCG TERM 457 396496 - 396506 + G 79 -8.2 -4.371 | AAACTCGGACTTTTC GCGG TTG CCGC TTTTCGTCTGATGCC Cphamn1_0373 395590 - 397374 + | ABC transporter-related protein TERM 458 397821 - 397831 + G 70 -3.2 -4.81551 | TTTGAGAGATAAAAA CCGT AAA ATGG TTTTTCATCTGCATA Cphamn1_0374 397408 - 398037 + | hypothetical protein TERM 459 398619 - 398605 - g 78 -2.2 -5.2189 | TGAATGAGGAAAAAA TATACA GGA TATATA ATGCGTGTAATCCCG TERM 460 398622 - 398635 + G 74 -3.7 -4.94902 | opp_overlap 398622 TACAGGATATATAAT GCGTG TAAT CCCGC TTTTTGTGATACTTC TERM 461 399121 - 399109 - g 76 -6.3 -4.63089 | TATGTGAAAAAATAA TCCAT ATT ATGGA GAATGATTTTTTGAT Cphamn1_0375 398088 - 399239 + | glycosyl transferase group 1 Cphamn1_0376 399302 - 399661 + | hypothetical protein Cphamn1_0377 400850 - 399861 - | transposase IS4 family protein Cphamn1_0379 401520 - 402059 + | hypothetical protein Cphamn1_0380 402174 - 403070 + | glycosyl transferase family 2 Cphamn1_0381 403122 - 404225 + | glycosyl transferase group 1 Cphamn1_0382 404393 - 405772 + | hypothetical protein Cphamn1_0383 405769 - 406890 + | glycosyl transferase group 1 Cphamn1_0384 406890 - 407498 + | sugar transferase Cphamn1_0385 409538 - 407505 - | NAD-dependent epimerase/dehydratase TERM 462 408708 - 408696 - G 73 -3.3 -5.0538 | GTTGATCTCAAAAAA CAGGA TAT CCCCG TCTTTTTGCCGTCCC TERM 463 409092 - 409117 + g 78 -3.9 -5.12971 | overlap 409094 TCTGGGTTTGACGAT TACCGGGTAGT CAAA GCTGTCCGGCA TTTTTCTTGCATCTT Cphamn1_0386 409799 - 410962 + | Glutamine--scyllo-inositol transaminase TERM 464 410968 - 410995 + F 76 -10 -3.28791 | gap 1, opp_overlap 410967 410970 410977, overlap 410972 410977 GCAATTATAATAACT GAGAGAAAACGGC TAT GTCGTTTTC-CTC TTCTGCGGCAGCAAT TERM 465 410972 - 410992 + F 70 -10.5 -2.52623 | opp_overlap 410970 410967 410977, overlap 410968 410977 TTATAATAACTGAGA GAAAACGGC TAT GTCGTTTTC CTCTTCTGCGGCAGC TERM 466 411006 - 411022 + F 81 -2.1 -5.60993 | overlap 411006 TCCTCTTCTGCGGCA GCAATGC ATT GCTTGGC TTTTTTTGTCGCAGA TERM 467 411446 - 411425 - g 73 -5.9 -4.56597 | GTTTGCTGTGAAAAA CCTGTTTTT CTAC ATAAACAGG CAGATTATATACAGG Cphamn1_0387 411054 - 412958 + | ABC transporter-related protein Cphamn1_0388 413818 - 413006 - | glycosyl transferase family 2 TERM 468 415291 - 415277 - R 75 -8.6 -3.73072 | opp_overlap 415277 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG TERM 469 415529 - 415507 - R 74 -6.9 -4.30559 | overlap 415527 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG Cphamn1_0390 416298 - 415573 - | glycosyl transferase family 2 Cphamn1_0391 417356 - 416277 - | glycosyl transferase family 9 Cphamn1_0392 418545 - 417349 - | O-antigen polymerase TERM 470 417478 - 417488 + g 72 -4 -4.8083 | opp_overlap 417472 417485, overlap 417485 AAGGCCAAATTTCTT TTGA AAA TCAA TTTTTGATGATGTTG TERM 471 417726 - 417745 + g 80 -2.2 -5.4593 | gap 1, opp_overlap 417726 TTTCCGCAAACACAA GACGT-AAT CCG GTTGACGTC TTTTTATTATTTTCC TERM 472 418659 - 418702 + H 74 -3.6 -5.07652 | overlap 418662 ACGCAGACTCAGTAT GATCGGCACCTTCCGGCATC CAGA GGTGTCGGCAGAAGCGGCTC TTTTCTTTTCAGCAG Cphamn1_0393 418891 - 419829 + | Abortive infection protein Cphamn1_0394 420168 - 420019 - | hypothetical protein Cphamn1_0395 420215 - 421048 + | phosphatidate cytidylyltransferase Cphamn1_0396 421151 - 421621 + | putative PTS IIA-like nitrogen-regulatory protein PtsN TERM 473 422283 - 422267 - g 70 -9.4 -3.51232 | overlap 422263 CTGTTTCGAAAGGAA CGCCCT CAGGC AGGGCG CCAGCGTCAGTTTTC Cphamn1_0397 421919 - 423223 + | histidyl-tRNA synthetase TERM 474 423231 - 423261 + F 74 -11.1 -2.75481 | opp_overlap 423235 CCGATTGAGGCCGCG AACAGGTGCCGAG GCTGA CTCGGCACCTGAA TGGTTCAGGTTAAGA TERM 475 423257 - 423235 - f 89 -14.9 -3.02511 | opp_overlap 423231 TTGAGGCCGCGAACA GGTGCCGAG GCTGA CTCGGCACC TGAATGGTTCAGGTT Cphamn1_0398 423292 - 423561 + | glutaredoxin 2 Cphamn1_0399 423748 - 423960 + | hypothetical protein TERM 476 424047 - 424075 + F 93 -9 -4.91511 | opp_overlap 424054, overlap 424054 AGGTAACAGGATTTT TAAGAAAGTGGG TTGCC CCCACTTTTTTG TTTTTCTGATAGAAT TERM 477 424068 - 424054 - f 74 -7.1 -4.1711 | opp_overlap 424054 424047 AGGATTTTTAAGAAA GTGGG TTGCC CCCAC TTTTTTGTTTTTCTG TERM 478 424054 - 424068 + F 100 -7.1 -5.98675 | opp_overlap 424054, overlap 424047 AGGATTTTTAAGAAA GTGGG TTGCC CCCAC TTTTTTGTTTTTCTG TERM 479 424172 - 424189 + G 100 -6.9 -5.31855 | overlap 424174 CAATTGAGAGAAGCG CTTCCGG CGAG CCGGATG TTTTTCTTGTTGCTC TERM 480 424174 - 424187 + G 76 -8.1 -4.27297 | overlap 424172 ATTGAGAGAAGCGCT TCCGG CGAG CCGGA TGTTTTTCTTGTTGC Cphamn1_0400 424099 - 424641 + | protein of unknown function DUF150 Cphamn1_0401 424695 - 426260 + | NusA antitermination factor TERM 481 426507 - 426487 - g 90 -6.1 -5.31877 | opp_overlap 426486, overlap 426501 AGTGATGAGAAAAAA CTTGTGGAT GAA ACCCGCAAG ATTCGTGAGGAAAAA TERM 482 428374 - 428348 - g 70 -8.1 -3.67389 | gap 1, overlap 428338 428350 AGAAACGACAGATAA TACGCCGTGAAC ATGA GTTCA-GGCGCA GTACCCGTGTGAAGC Cphamn1_0402 426304 - 429039 + | translation initiation factor IF-2 TERM 483 429402 - 429377 - g 70 -10.5 -2.92175 | opp_overlap 429376 429375 CGCGAAGATACGACA CCAGTTCCG CCGGATAC CGGAACTGG AATTTTACGAAGACC Cphamn1_0403 429132 - 429482 + | ribosome-binding factor A Cphamn1_0404 429585 - 430307 + | tRNA pseudouridine synthase B Cphamn1_0405 430315 - 431280 + | riboflavin biosynthesis protein RibF Cphamn1_0406 431327 - 431596 + | ribosomal protein S15 Cphamn1_0407 431686 - 432573 + | domain of unknown function DUF1732 Cphamn1_0408 432741 - 433316 + | Guanylate kinase Cphamn1_0409 433331 - 433684 + | hypothetical protein TERM 484 433970 - 433956 - g 70 -3.4 -4.78237 | opp_overlap 433967 CATCTCATAACAAAA CCGGCA CAA CGCAGG GAAGGCAGAGCTTTT Cphamn1_0410 433665 - 434159 + | Glyoxalase/bleomycin resistance protein/dioxygenase Cphamn1_0411 434951 - 434199 - | Nucleotidyl transferase Cphamn1_0412 435489 - 435106 - | aspartate 1-decarboxylase TERM 485 435346 - 435360 + g 74 -4.2 -4.86621 | CTCCCCGTTGTTATT GTTCAC GCA GAGAAC TTTTTCATTGGGGAT Cphamn1_0413 436141 - 435587 - | protein of unknown function DUF1239 Cphamn1_0414 436749 - 436159 - | outer membrane chaperone Skp (OmpH) Cphamn1_0415 438102 - 436954 - | DNA protecting protein DprA TERM 486 437460 - 437493 + g 71 -6.7 -4.2558 | opp_overlap 437463 GCCACTCCTCGGAGA GTATGGCGCCCTCTT CGAT AATACGGGGCCATAC TTTTCCTGCCGGATC TERM 487 438111 - 438099 - G 72 -4.1 -4.7497 | GGGAGTCACTAAAAA TCACG TTT CATGA GTTTGAGGGCAAAAC Cphamn1_0416 439090 - 438092 - | Polyprenyl synthetase Cphamn1_0417 440171 - 439098 - | isopentenyl-diphosphate delta-isomerase, type 2 TERM 488 439531 - 439545 + g 70 -2.8 -4.77986 | TCGATGATCGTAACG CCTTTT TCA ACAAGG TTTTTCGCTGTTTCA TERM 489 439590 - 439620 + g 76 -5.4 -4.79756 | ACCGACCTCTTTAAC GATGACCGGAACCT TCA GGGTTTCCGTGATC TTTTTCAGTTGTGTG TERM 490 440137 - 440152 + g 71 -5.4 -4.4831 | TCGACGTGGCTCTGC TTACGG TTTA CCGTGA TTGTTTTTGATGCGT Cphamn1_0418 440287 - 441555 + | protein of unknown function DUF214 Cphamn1_0419 443649 - 441823 - | ABC transporter-related protein Cphamn1_0420 445101 - 443686 - | Phosphomannomutase TERM 491 444302 - 444269 - G 70 -2.4 -4.96848 | overlap 444271 TGCCTGAGATAAAAA TCGGCACAGACTAC GAGGGA GTACTCTTCGCCAA ACATAGAGCCGTCTT TERM 492 445236 - 445215 - H 71 -2.3 -5.16572 | gap 1, opp_overlap 445215 445226, overlap 445218 ATGGAAGGGAAAAAA CGA-CAGGTT TTC AACGTGATCG TTGTTATGTTCACAC Cphamn1_0421 445523 - 445798 + | ribosomal protein S20 Cphamn1_0422 445907 - 446509 + | Holliday junction DNA helicase RuvA TERM 493 446838 - 446857 + GF 85 -3.6 -5.44119 | opp_overlap 446838 GTTCTGAAAGAAGAG GTAGCT GATCGAAA AGCTAC TTTTTTTGAGGTGAC Cphamn1_0423 446481 - 447791 + | FolC bifunctional protein Cphamn1_0424 448179 - 449468 + | transcription termination factor Rho Cphamn1_0425 449716 - 449465 - | hypothetical protein TERM 494 449513 - 449525 + g 82 -7.7 -4.614 | opp_overlap 449512 AGAGCGTACAAGGAC GGGAA ACT TTCCC TTTTCTGTCATTCCC TERM 495 450070 - 450056 - H 100 -6.4 -5.66926 | overlap 450057 GGAAAAAAAAGAAAA CGCCAT AAG ATGGCA GTGCACAAACGCAAA TERM 496 450069 - 450057 - H 72 -7.7 -3.96495 | overlap 450056 GAAAAAAAAGAAAAC GCCAT AAG ATGGC AGTGCACAAACGCAA TERM 497 450395 - 450409 + H 100 -11.4 -6.17268 | TGCTTCTGATCATGG GCCGCT TTG AGCGGC TTTTTTTTGTTCTAC Cphamn1_0426 450447 - 450974 + | Tripartite ATP-independent periplasmic transporter DctQ component TERM 498 450983 - 450994 + T 71 -4.4 -4.59207 | GGAGTAACTATTGAT GGAA GTAC TTCC TTTTATCATGTTTGT TERM 499 451942 - 451963 + T 71 -8.7 -3.44051 | opp_overlap 451925, overlap 451927 451925 GTTCAGGCAAATTTT CAGCCTGAA CTGT TTCTGGCTG TTGTCATGATCGGGG TERM 500 452001 - 452017 + T 72 -5.9 -4.52781 | CGCAGGGTTTTTCAT TGATTTC ATA GAGATCA TTTTCATTGTGGTTC Cphamn1_0428 453636 - 452473 - | TRAP dicarboxylate transporter- DctP subunit TERM 501 452542 - 452560 + g 70 -2.4 -4.98531 | overlap 452535 CTGCATGCGGAAAGA GGTATATG CAT CATAAATC TTTTTGCTTTGAGCG TERM 502 453250 - 453223 - G 70 -4.8 -4.59511 | overlap 453212 453210 453227 AACAGCCGCGAAAAA CTGAGCGGCA GGAACTTT TCCCGCCCAG TAGTACGACGCTCCA TERM 503 454278 - 454268 - g 72 -8.2 -3.85817 | AGCTGTTTGTATAAA CCGG GTG CCGG ATACAGGTTCGAGAG TERM 504 454419 - 454441 + G 72 -10 -3.35015 | opp_overlap 454439 GTTACTGTGACTGCT TTTTCCTTAG GGA CTAAGGAGAA TTATGACATACTTCG TERM 505 454550 - 454581 + G 70 -9.5 -3.22094 | overlap 454549 454548 ATCACTTTCCAGGGC GATCAGGGAGTAC TATTCC GTACTTCCCGATC TGGTTTTCTGTGGAC Cphamn1_0429 454245 - 454985 + | Electron transfer flavoprotein alpha/beta-subunit Cphamn1_0430 454986 - 455966 + | Electron transfer flavoprotein alpha subunit Cphamn1_0431 456165 - 456761 + | protein of unknown function DUF151 TERM 506 456799 - 456816 + T 100 -11.3 -5.21709 | opp_overlap 456799 GGCATAATGAAAAAA GGAGGTC ATGA GACCTCC TTTTTTGCTGTACCA TERM 507 456816 - 456799 - T 100 -11.3 -5.32944 | opp_overlap 456799 GGCATAATGAAAAAA GGAGGTC ATGA GACCTCC TTTTTTGCTGTACCA Cphamn1_0432 457547 - 456852 - | porin, opacity type TERM 508 457701 - 457683 - R 81 -9.6 -3.86897 | GTTAGGTTGTAGAAA GCATGACG GAT CATCATGC GTAGGAAATGTATCG TERM 509 457837 - 457798 - R 100 -8.6 -6.4753 | opp_overlap 457809 457834, overlap 457809 TTAAAGAAAAAAAAA TGGAAAAAAAAGGAGGCG GTTA CGCCTCCTTTTTAACCGA TGAATCTCGGATTTA TERM 510 457826 - 457809 - R 100 -12.7 -5.91981 | opp_overlap 457809, overlap 457798 AAAATGGAAAAAAAA GGAGGCG GTTA CGCCTCC TTTTTAACCGATGAA TERM 511 457809 - 457826 + r 100 -12.7 -4.58395 | opp_overlap 457809 457798 AAAATGGAAAAAAAA GGAGGCG GTTA CGCCTCC TTTTTAACCGATGAA Cphamn1_0433 458539 - 457850 - | hypothetical protein Cphamn1_0434 461155 - 458690 - | outer membrane protein assembly complex, YaeT protein TERM 512 458821 - 458839 + g 71 -6.7 -4.18488 | gap 1 TCGGCAGGTAGAGCC TCAGGCCG AGTC CGGCC-GA TTTCTTGAGGTCGCT TERM 513 459342 - 459359 + g 76 -11.3 -3.32343 | GTGATGGAGATCTCA TCAGCCG TGTC CGGCTGA TTGTCAGAGTCTACA TERM 514 460155 - 460170 + g 83 -3.3 -5.48303 | opp_overlap 460155, overlap 460148 460145 TTGTCTTTGGAAAAG TTCAG CTTTTC CTGAA TTTTTTTCGAGTTGT TERM 515 461170 - 461183 + r 74 -3.1 -5.09762 | overlap 461171 TCGTTTTTTATAACC TGCTT TGTA AAGCG TTTTTGTCTTGAAGT Cphamn1_0435 461992 - 461162 - | undecaprenyl diphosphate synthase Cphamn1_0436 462202 - 463635 + | glutamyl-tRNA(Gln) amidotransferase, A subunit TERM 516 463973 - 463989 + G 70 -4.4 -4.66002 | gap 1 CGCGGTGGTCGTTGC CGGAGCG AACA CG-TCCG TTATTTTTGTTCCTG TERM 517 464614 - 464586 - g 82 -7.4 -4.65895 | gap 1, opp_overlap 464588, overlap 464569 464587 464588 CGGGCCATGGAAAAA GCCGGGATTCACG TTGT CGAGAACCCCG-C GGATATCGGTGACAC TERM 518 464613 - 464588 - g 70 -11.1 -2.63208 | opp_overlap 464588, overlap 464569 464586 464587 GGCCATGGAAAAAGC CGGGATTCACG TTGT CGAGAACCCCG CGGATATCGGTGACA Cphamn1_0437 463710 - 464657 + | succinyl-CoA synthetase, alpha subunit TERM 519 464741 - 464772 + T 100 -15.3 -5.90981 | opp_overlap 464761 GTGACAAGAAGTTGT GAGGCTGTCTCAT TGAAGT ATGAGGCAGCCTC TTTTTTTTGCTGTCC Cphamn1_0438 465885 - 464905 - | KpsF/GutQ family protein Cphamn1_0439 466218 - 466565 + | hypothetical protein TERM 520 466838 - 466859 + G 76 -6.6 -4.58308 | gap 1, overlap 466835 TTCAGGAGGTGACAG CGCGCGTTG TTTTT CAACG-GCG TTTATTTCATTGCTG TERM 521 467187 - 467204 + G 73 -9.1 -3.71363 | overlap 467201 AGTCTGCTTTTCGTT CTGCCTG TATT CGGGCAG TTTCAGCGTTTTTTT TERM 522 467516 - 467530 + G 72 -8.6 -3.93148 | ACTTTTTCGCCATGT GTTGAG TAT CTCAAC TGTTTTTGCCATGGT Cphamn1_0440 466596 - 468101 + | polysaccharide biosynthesis protein TERM 523 468237 - 468268 + T 70 -6.6 -4.05033 | opp_overlap 468224, overlap 468238 AAGAGAAAGTCATTC CCCCGTGTAATAAT AACG GTCATTACACGGGC TTTATGTGGCATCCA TERM 524 468238 - 468267 + T 73 -10.1 -3.02698 | overlap 468237 AGAGAAAGTCATTCC CCCGTGTAATAAT AACG GTCATTACACGGG CTTTATGTGGCATCC Cphamn1_0441 468994 - 468329 - | hypothetical protein TERM 525 468357 - 468368 + g 74 -7.2 -4.15565 | CGTCCTTGTCCATTT CCCC TTCC GGGG TTTTGGGATGGTGGC Cphamn1_0442 469581 - 468991 - | hypothetical protein Cphamn1_0443 470034 - 469681 - | hypothetical protein Cphamn1_0444 470810 - 470172 - | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 526 470467 - 470485 + g 100 -3.2 -5.95539 | ATTACCCGTTTCAGA GAGGAAAA TCT TTTTTTTC TTTTTTTCTTTCGGA Cphamn1_0445 471702 - 470944 - | Methyltransferase type 11 TERM 527 471312 - 471325 + g 79 -8.1 -4.40561 | overlap 471308 GATGATAGCCCCATG CGGCA AAAA TGCCG TTGTTTTTCAGAACG Cphamn1_0446 472155 - 471709 - | putative thiol-disulphide oxidoreductase DCC Cphamn1_0447 473555 - 472173 - | Phosphoglucomutase TERM 528 472379 - 472391 + g 100 -4.1 -6.13503 | CTCTGGAAGCTTTTG CGATC AAG GATTG TTTTTTTTCTTCATC TERM 529 472843 - 472853 + g 84 -2.4 -5.55855 | overlap 472820 CCGTCGTTTATGATG CCTG CTG CCGG TTTTGTTTTTTTGCA TERM 530 474086 - 474103 + G 74 -7.7 -4.20806 | opp_overlap 474076 ATCAAGGCGTATGTC GATCGCC TGAT GGTGATC TTTGATTTTGAGGTG TERM 531 474196 - 474210 + G 73 -5.7 -4.43844 | CAGCCGGCTTGAGTT TCGCT CGAAA AGCGA TTTTCTCAGTGATCA Cphamn1_0448 473675 - 474826 + | lipid-A-disaccharide synthase TERM 532 474991 - 474981 - g 71 -5.4 -4.56597 | opp_overlap 474966 GCTGTTTTTGAAAAA GCTT CTC AAGC TGATCGTCTTTGTGA Cphamn1_0449 474886 - 475149 + | hypothetical protein Cphamn1_0450 475150 - 475269 + | hypothetical protein Cphamn1_0451 475266 - 476081 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Cphamn1_0452 476078 - 476479 + | TOBE domain protein TERM 533 476665 - 476676 + G 73 -3 -4.96848 | ACGGTGCTTGGATTT TATC TGCT GATA TTTTTCTCTGACCGG Cphamn1_0453 476476 - 477153 + | molybdate ABC transporter, inner membrane subunit Cphamn1_0454 477158 - 478063 + | ABC transporter-related protein Cphamn1_0455 480047 - 478086 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 534 479446 - 479462 + g 74 -2.1 -5.08011 | AATCCAGATGGGCCA GCACCGA TTA TCGCCGC TTTTTTGCCGGTTTT Cphamn1_0456 481052 - 480075 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Cphamn1_0457 481528 - 481127 - | hypothetical protein Cphamn1_0458 481910 - 481512 - | hypothetical protein TERM 535 481987 - 482006 + r 74 -4.2 -4.92669 | opp_overlap 481987 ATTATTTACAGCATA CGGTTGAG TCTG TTCTACCG TTATTTTTTTCTGTG Cphamn1_0459 482273 - 482007 - | hypothetical protein TERM 536 482187 - 482207 + g 76 -3.1 -5.09895 | overlap 482189 482192 GCTGTCACTGATTGC CTCAACCTG CTC CGGGATGTG TTTTTTCCCTGAATG Cphamn1_0460 483161 - 482388 - | short-chain dehydrogenase/reductase SDR Cphamn1_0461 483434 - 484117 + | ABC transporter-related protein TERM 537 484652 - 484636 - g 82 -12.3 -3.53012 | GCTTGGCCTCGCAAA GGGCAAG ATA CTTGCCC ACGAGAGAAACGCTA Cphamn1_0462 484127 - 485659 + | hypothetical protein TERM 538 486896 - 486910 + G 84 -11.4 -3.9461 | opp_overlap 486889 486891 AGGAAAAACGCCGGC CGGGCA CCC TGCCCG TTGTTGTTCCCGAGA TERM 539 487418 - 487404 - g 74 -11.4 -3.14132 | CGCGTTTTTCAGGAA GCCGTC CGC GACGGC AATGATCGAAAAACT Cphamn1_0463 485677 - 487731 + | DNA ligase, NAD-dependent TERM 540 487969 - 487949 - f 77 -11.2 -2.66106 | overlap 487945 CAGGGCAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGGAGTGAAG Cphamn1_0464 487969 - 488676 + | hypothetical protein Cphamn1_0465 489453 - 488704 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 541 489062 - 489079 + g 71 -5.5 -4.45485 | opp_overlap 489059 489062 ACAATATCGAAAGAG GCGTCCT CGTA AGGAAGC TTTTCTGCATATCCT Cphamn1_0466 489850 - 489437 - | Phosphoribosyl-AMP cyclohydrolase TERM 542 489684 - 489695 + g 76 -5.8 -4.60889 | overlap 489671 489670 489691 CTCCTGCTCCAGTAG CAGG CTTT CCTG TTTTTCAGGGTCATT Cphamn1_0467 490024 - 491106 + | efflux transporter, RND family, MFP subunit Cphamn1_0468 491189 - 491416 + | hypothetical protein TERM 543 491636 - 491646 + G 86 -3.2 -5.67967 | overlap 491632 TGGATTCACTTTGGC CTTG GGG CAGG TTTTTTTCTCCTGCT TERM 544 491655 - 491669 + G 73 -5.6 -4.74103 | overlap 491656 GGGCAGGTTTTTTTC TCCTGC TGG GCAGGC TTTTTACGTTGCCGC TERM 545 492187 - 492201 + G 77 -12.8 -2.78384 | CGTAACGCTTTTTGA GGCGGC TAT GCCGCC TATGATCACAGCAGG Cphamn1_0469 491429 - 492325 + | Auxin Efflux Carrier Cphamn1_0470 492429 - 492881 + | protein of unknown function DUF1499 TERM 546 492953 - 492965 + F 70 -2.6 -4.98255 | TAATTACATGCTTTT CCTG ACCCC CGGG TTTTTGTGGTTAGCC TERM 547 493037 - 493047 + F 72 -8.2 -3.87307 | overlap 493038 TTTCGTGTTTACCAC CGCG CAC CGCG CTTTTCTTTTTTGTC TERM 548 493038 - 493048 + F 100 -8.2 -5.49579 | overlap 493037 TTCGTGTTTACCACC GCGC ACC GCGC TTTTCTTTTTTGTCG TERM 549 493428 - 493410 - g 70 -8.8 -3.60104 | overlap 493408 493411 CTGACAGGATAAATA CGGCTCTG CGA CAGAGCCT GGGGATAAAGAATGA TERM 550 493427 - 493411 - g 74 -12.3 -2.7558 | overlap 493410 493408 TGACAGGATAAATAC GGCTCTG CGA CAGAGCC TGGGGATAAAGAATG TERM 551 493657 - 493638 - g 74 -4.2 -4.80656 | ATGAAGAAGAGAAAA GTGAGGCG GAAG CACCTGAC AGGAGATCGCCCGGG Cphamn1_0471 493112 - 493699 + | NADH dehydrogenase (ubiquinone) 24 kDa subunit Cphamn1_0472 493696 - 495480 + | NADH dehydrogenase (quinone) TERM 552 497249 - 497233 - g 79 -5.1 -5.00616 | TCGGTCTTGAAAAAA TTCAGGC GAT GGCTGAA GCCTCACGTTGTATA Cphamn1_0473 495537 - 498527 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cphamn1_0474 498548 - 499153 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit TERM 553 499390 - 499372 - g 73 -3.1 -5.055 | TGAACTTTGAAAAAA TCAGGGA AATAG TCACTGA CCTTGATATTCCTGT Cphamn1_0475 499176 - 499958 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Cphamn1_0476 500012 - 500617 + | segregation and condensation protein B TERM 554 500622 - 500609 - g 100 -4.5 -5.94597 | GAATATGAAAAAAAA GAGCA GTAA CGCTC ATGTAGAAACCCCGG TERM 555 501038 - 501064 + G 76 -5 -4.82901 | opp_overlap 501038 501062 ATCGGAAGTTGAAAA GGAGTATCTGGC AGA GCTGGAAACCCC TTTTTCTGAAAAGGA TERM 556 501210 - 501200 - g 73 -5.4 -4.63527 | TCATGAGGGGAAAAA TCAC CAG GTGA GAAGGATGTTCCGTT Cphamn1_0477 500598 - 501362 + | pseudouridine synthase TERM 557 503204 - 503215 + G 71 -7.2 -4.02051 | overlap 503212 ATGGAGAGGGACAGG CCGC TTTC GCGG TTGTTTCGCTTGATC Cphamn1_0478 501397 - 503367 + | hypothetical protein Cphamn1_0479 503502 - 503981 + | Exonuclease RNase T and DNA polymerase III Cphamn1_0480 503998 - 504357 + | Domain of unknown function DUF1801 Cphamn1_0481 504833 - 504396 - | hypothetical protein Cphamn1_0482 505172 - 504909 - | hypothetical protein Cphamn1_0484 505601 - 506257 + | HAD-superfamily hydrolase, subfamily IA, variant 1 TERM 558 506855 - 506866 + F 71 -4.4 -4.62471 | AACAGAATTGTATTG TCCT CGTT AGGA TTTTTGCAGGTTAAG Cphamn1_0485 506931 - 507491 + | cell wall hydrolase SleB TERM 559 507555 - 507545 - f 70 -5.4 -4.32067 | overlap 507542 GATGCTACAAAACAA GTCT ATA AGAC CTATCCATAATCCAT Cphamn1_0486 507580 - 507732 + | hypothetical protein Cphamn1_0487 508731 - 507775 - | Sua5/YciO/YrdC/YwlC family protein Cphamn1_0488 509439 - 508777 - | phosphatidate cytidylyltransferase TERM 560 509690 - 509710 + H 70 -9.7 -2.98304 | opp_overlap 509684 509687 509685 509688, overlap 509687 509704 AGATTAAAACCACTG CTACAGCAG TTC CTGCTGAAG TGTATGATACTGTTT TERM 561 509817 - 509835 + H 100 -14.6 -5.64274 | TCGTTGTATTCGTAA GCCCGGAA TTT TTCCGGGC TTTTTTTGTCCCTGG Cphamn1_0489 509930 - 511513 + | Ppx/GppA phosphatase Cphamn1_0490 511503 - 513326 + | para-aminobenzoate synthase, subunit I Cphamn1_0491 513323 - 513445 + | hypothetical protein Cphamn1_0492 513483 - 513929 + | hypothetical protein Cphamn1_0493 514754 - 514092 - | endonuclease III Cphamn1_0494 516225 - 514729 - | transposase, IS5 family, putative TERM 562 514858 - 514838 - G 100 -8.2 -5.30686 | AACAGGCACAAAAAA GGAGCGGC GAGCA GCCGGTCC AGGTTCATCACGAGG Cphamn1_0495 517114 - 516419 - | metallophosphoesterase Cphamn1_0496 517634 - 517128 - | NusB antitermination factor Cphamn1_0497 518345 - 517653 - | Haloacid dehalogenase domain protein hydrolase Cphamn1_0498 521895 - 518338 - | chromosome segregation protein SMC TERM 563 519826 - 519837 + g 76 -5.8 -4.60487 | CAGCCTGGATTGTTC GAGC CCAA GCTC TTTTTCCAGATCGTG TERM 564 519939 - 519900 - G 73 -10.8 -3.25823 | gap 1, opp_overlap 519894 519900 519901, overlap 519901 TTTTTCCCAGACGAA GGCCCTCGTTTTCTGCGGA GCT TCCGCCGAAAACAACG-CC GTTTCCTCCTATTTT TERM 565 519939 - 519901 - G 70 -11 -2.55351 | opp_overlap 519901 519900 519894, overlap 519900 TTTTCCCAGACGAAG GCCCTCGTTTTCTGCGGA GCT TCCGCCGAAAACAACGCC GTTTCCTCCTATTTT TERM 566 520599 - 520609 + g 73 -5.4 -4.59853 | overlap 520588 CTCTTGCCGGCAGGG CATC GTT GATG TTTTTCAGGAGTTCA TERM 567 520858 - 520875 + g 80 -2.7 -5.36965 | TTTTTCAAGCGGTTG CAGCT GGTCGGTA AGCTG TTTTTTCTCGTGTTC Cphamn1_0499 522913 - 522023 - | dihydropteroate synthase Cphamn1_0500 524016 - 522988 - | peptidase M50 Cphamn1_0501 524484 - 524032 - | cytochrome c, putative TERM 568 524169 - 524153 - G 100 -6.5 -5.47431 | overlap 524156 GGAAGATAGAAAAAA GGAGGCA TTT TGCCTTC CCGGACTTCTTCGGC Cphamn1_0502 525430 - 524531 - | Methyltransferase type 12 TERM 569 525969 - 525959 - gH 76 -3.2 -5.08601 | GGAGCTCAACAAAAA TGGC CTT ACCA CTTCAAGGGAGGGCG TERM 570 526029 - 526013 - gH 91 -5.1 -5.41143 | opp_overlap 526002, overlap 526014 CAGGCTCGAAAAAAA TCCTGAT GCA ATCAGGG TCAGGGATGTTATCG TERM 571 526028 - 526014 - gH 75 -8.6 -3.83963 | opp_overlap 526002, overlap 526013 AGGCTCGAAAAAAAT CCTGAT GCA ATCAGG GTCAGGGATGTTATC Cphamn1_0503 525798 - 526301 + | transcriptional regulator, BadM/Rrf2 family Cphamn1_0504 526273 - 527130 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_0505 527333 - 527752 + | Tetratricopeptide TPR_2 repeat protein Cphamn1_0506 527756 - 529384 + | hybrid cluster protein TERM 572 529409 - 529436 + T 100 -9.2 -5.95539 | opp_overlap 529408 ATTGTCTGACTGAAG GCCGTTCCAT CTGAAGTT ATGGAGCGGC TTTTTTTGTTTAGAG Cphamn1_0507 530516 - 529446 - | permease TERM 573 529499 - 529477 - G 77 -9.8 -3.68292 | overlap 529478 AGGTTGAATATATAA CCGACCAGGA TGA TCCCGGTCGC AACAATGCCTGCAAA TERM 574 529498 - 529478 - G 79 -13.3 -2.80493 | overlap 529477 GGTTGAATATATAAC CGACCAGGA TGA TCCCGGTCG CAACAATGCCTGCAA TERM 575 529604 - 529576 - G 70 -10.3 -2.91264 | TCCGGCAGTGAGAGA GCGATGACGCTCA TCA TGAACGCCATTGC GGTGCCCAGAGCGGC TERM 576 530461 - 530477 + g 73 -2.9 -5.02074 | opp_overlap 530447 ACCGCGGCAATTCGG CCGGAGA TGT TTTCAGG TTTTTTGCCGGATGG Cphamn1_0508 530769 - 530536 - | redox-active disulfide protein 2 Cphamn1_0509 531166 - 530825 - | transcriptional regulator, ArsR family TERM 577 531176 - 531209 + H 86 -9.7 -4.42464 | opp_overlap 531200, overlap 531177 531178 TTTCATCTCTGTATG ATCGAGTTTATCGTA AATA TACGATAAACTCGCG TTTATTTCAAGCATT TERM 578 531177 - 531208 + H 91 -13.2 -3.24755 | opp_overlap 531200, overlap 531176 531178 TTCATCTCTGTATGA TCGAGTTTATCGTA AATA TACGATAAACTCGC GTTTATTTCAAGCAT TERM 579 531178 - 531207 + H 100 -16.7 -2.54371 | opp_overlap 531200, overlap 531177 531176 TCATCTCTGTATGAT CGAGTTTATCGTA AATA TACGATAAACTCG CGTTTATTTCAAGCA TERM 580 532137 - 532154 + G 73 -3.3 -4.93296 | overlap 532137 CCTACGCCCTCTGTT TCGCCGC CGGG GCGATGA TTTTTGTCGTGGTCG Cphamn1_0510 531464 - 532279 + | zinc/iron permease TERM 581 532301 - 532333 + F 91 -10 -4.82548 | gap 1, opp_overlap 532303 532309, overlap 532304 532309 TCTGTATCTATGAAG TATGTAAAGGCGGCT TGTG GGCCGCCTTTAC-TG TTTTCTCTCTTTTTG TERM 582 532332 - 532303 - f 79 -12.2 -2.79098 | opp_overlap 532301 532304 532309, overlap 532309 TGTATCTATGAAGTA TGTAAAGGCGGC TTGTGG GCCGCCTTTACT GTTTTCTCTCTTTTT TERM 583 532304 - 532331 + F 100 -16.4 -3.9872 | opp_overlap 532303 532309, overlap 532301 532309 GTATCTATGAAGTAT GTAAAGGCGGCT TGTG GGCCGCCTTTAC TGTTTTCTCTCTTTT TERM 584 532309 - 532326 + F 82 -10.5 -4.11862 | opp_overlap 532303 532309, overlap 532304 532301 TATGAAGTATGTAAA GGCGGCT TGTG GGCCGCC TTTACTGTTTTCTCT TERM 585 532326 - 532309 - f 79 -9.8 -3.72241 | opp_overlap 532309 532304 532301, overlap 532303 TATGAAGTATGTAAA GGCGGC TTGTGG GCCGCC TTTACTGTTTTCTCT Cphamn1_0511 532496 - 533338 + | hypothetical protein Cphamn1_0512 533662 - 535167 + | Alkaline phosphatase TERM 586 535207 - 535236 + F 100 -12.2 -5.85737 | GAGTGATTTTAGCTC CCTGGAAGAGCC GTTGCA GGCTCTTTCGGG TTTTTTTATTCATCT TERM 587 535391 - 535372 - g 76 -7.8 -4.35604 | opp_overlap 535374 GGAACTTACAATAAA CACCCTGC ATGA GAAGGGTG TCGTGATTTCGATAG Cphamn1_0513 535220 - 536380 + | YibE/F family protein TERM 588 536416 - 536386 - T 100 -11.1 -6.02919 | opp_overlap 536386 GTATAAATAAAAAAA GCCACCTCGTGCA AGCAA TGCTTGAGGTGGC TTTTTTGTTTACATG TERM 589 536386 - 536416 + T 100 -13.3 -5.65927 | opp_overlap 536386 GTATAAATAAAAAAA GCCACCTCGTGCA AGCAA TGCTTGAGGTGGC TTTTTTGTTTACATG Cphamn1_0514 540264 - 536425 - | RTX toxins and related Ca2+-binding protein TERM 590 540379 - 540405 + H 100 -4.4 -5.84381 | overlap 540381 GGAAAAGTCAAAGCT CCGGATATGTGG GGT TTACGTATCCTG TTTTTTTATTGATGG TERM 591 540381 - 540403 + H 72 -5.6 -4.55661 | overlap 540379 AAAAGTCAAAGCTCC GGATATGTGG GGT TTACGTATCC TGTTTTTTTATTGAT TERM 592 540603 - 540621 + H 81 -11.6 -3.24021 | opp_overlap 540601 540602, overlap 540606 540609 ATCCATACAATAACG CCGCGGCG ATC CGACGCGG TTCGATGTTTCCCGG TERM 593 542134 - 542146 + G 71 -5.5 -4.45765 | TGAGATCAGTGAGAT CGTGT TCA ACGCG TTTCTTCGTTTTGCC Cphamn1_0515 540734 - 542545 + | Radical SAM domain protein Cphamn1_0516 542574 - 543305 + | DNA alkylation repair enzyme Cphamn1_0517 543311 - 543679 + | transcriptional regulator, ArsR family TERM 594 543860 - 543884 + G 74 -7.1 -4.36914 | overlap 543862 TTTTTGTCGCCGGAC TTCTCAGGGCG TTT CTTCCTGAGGA TTTTGTGGCGAAGCA TERM 595 543952 - 543923 - g 90 -12.3 -4.11371 | opp_overlap 543916 543928 GAAGAGGGGTGAAAA GTATACTGAAAGC TTCA GCTTTCGGTATAC CGATCCCTTTGTGCA TERM 596 543982 - 543995 + G 74 -9.5 -3.53012 | AGTTGCGGAGTTGTT CCGGC AGCA GCCGG TTTGAAAGAACAGGG TERM 597 544013 - 544042 + G 70 -9.3 -3.62096 | opp_overlap 544021, overlap 544016 544020 TGAAAGAACAGGGAG CAGGAAAAGGGGC CGTG GCCTCGTTTCTTG TTTCCACTCCTGAAA TERM 598 544785 - 544803 + G 71 -6.7 -4.13654 | overlap 544791 544797 CGCTATTCTGCTGCT GGTTCTG ATAGG CAGGACC TTTCTGATTTCAAAG Cphamn1_0518 543757 - 544827 + | permease TERM 599 545704 - 545735 + G 70 -9.4 -3.57144 | gap 1, opp_overlap 545697 AAGAGATATCGGGCC GGGT-CTCGCGGCCT CAG GGGCTGCGATTACCC TTTACGCATCAGGCA Cphamn1_0519 544952 - 546019 + | protein of unknown function DUF900 hydrolase family protein Cphamn1_0520 546054 - 546707 + | HAD-superfamily hydrolase, subfamily IA, variant 3 Cphamn1_0521 549628 - 546782 - | excinuclease ABC, A subunit Cphamn1_0522 549988 - 550212 + | hypothetical protein TERM 600 550224 - 550248 + T 100 -15.8 -5.75945 | TTGAAACAGTTCTTA CAGCGCCATC ACAGA GATGGCGCTG TTTTTTTTGACCGAT Cphamn1_0523 553015 - 550265 - | pyruvate, phosphate dikinase TERM 601 551772 - 551784 + g 86 -3.3 -5.55855 | overlap 551759 GTGGCAAGATGCTTT CCTTC TTC GATGG TTTTCTTTTTTTCGG TERM 602 552586 - 552598 + g 76 -4.8 -5.00616 | overlap 552578 AGTCCCAGGCGAATC TCGG ATTTC CCGA TTTTTTCGCAAGCCC Cphamn1_0524 553333 - 554199 + | inner-membrane translocator Cphamn1_0525 555027 - 554371 - | ThiJ/PfpI domain protein TERM 603 556188 - 556212 + G 70 -8.7 -3.55563 | CTGTAGATCCTGCAA TTCCATGGA GTCCTGA TCCATGGAA TTTCCGGCATACGGT Cphamn1_0526 555494 - 556279 + | hypothetical protein Cphamn1_0527 556336 - 557028 + | Silent information regulator protein Sir2 Cphamn1_0528 557635 - 557132 - | hypothetical protein Cphamn1_0529 557752 - 558294 + | isochorismatase hydrolase TERM 604 558442 - 558467 + T 74 -6.9 -4.42062 | gap 1, opp_overlap 558436 558435 GAGAGGAACGTCATG CCGCACTTGATG CGG CATCCA-TGCGG TTTCTTTCAGGAGTA TERM 605 558633 - 558619 - T 78 -6.4 -4.69214 | GATTCAACAAATAAA CAGAAG TCC CTCCTG CTGTCATGAAACAGC Cphamn1_0530 559677 - 558637 - | tetraacyldisaccharide 4'-kinase TERM 606 559630 - 559620 - G 70 -3.2 -4.82901 | overlap 559621 559622 TGTTTCTGACAAAAA TGCC GGC AGCA TAAAGCAAGGCCGCC Cphamn1_0531 560287 - 559670 - | protein of unknown function DUF374 TERM 607 559936 - 559949 + g 74 -4.5 -4.85599 | overlap 559937 GGCCGTCGGGAGTGA TGGCA ATGA TGCCG TTTTTCTCCAGTCGG TERM 608 561204 - 561194 - g 76 -3.2 -5.07567 | overlap 561196 GGATACCGGAAAAAA TACC GGT GGCA TGGGAGCGTATGCTC Cphamn1_0532 560511 - 561791 + | phosphoribosylamine/glycine ligase Cphamn1_0533 561808 - 562239 + | hypothetical protein Cphamn1_0534 562323 - 563810 + | Carbamoyl-phosphate synthase L chain ATP-binding TERM 609 564153 - 564170 + G 70 -2.7 -4.79352 | gap 1 TGCTTCTTTTGATCT TCC-TGTG TTA CGCAAGGA TTTTATTATCGATGA Cphamn1_0535 563812 - 564588 + | Indole-3-glycerol-phosphate synthase Cphamn1_0536 565234 - 564569 - | Ribulose-phosphate 3-epimerase Cphamn1_0537 567475 - 565307 - | surface antigen (D15) TERM 610 566392 - 566402 + g 73 -5.4 -4.59853 | ACTTTGAATAGAGGC TCTC ATC GAGA TTTTTCAGCAGTTCA TERM 611 566534 - 566523 - G 74 -7.2 -4.15044 | opp_overlap 566523 GTTCCCGTGAATAAA CCGC CATA GCGG TTGTCCACGAAAATT Cphamn1_0538 567751 - 567524 - | hypothetical protein Cphamn1_0539 568702 - 567776 - | Peptidase M23 TERM 612 568796 - 568810 + r 74 -2 -5.21709 | overlap 568797 568798 ATCCCAAGGTCTCAG TGGGCT TCC AGCCAG TTTTTTCCTGTACCG Cphamn1_0540 571602 - 568792 - | DNA polymerase I TERM 613 568882 - 568911 + g 73 -3.3 -4.9181 | opp_overlap 568886 TGCCGCTTTTTGCAT GCAACCCTCGGCG ATTT CGGCGAGAGCGGC TTTTTCCTCTTCTGT TERM 614 568956 - 568938 - G 74 -8.2 -4.07568 | overlap 568941 CTGTCGTTTCGAAAA CAAGTTCA TCG TGAACCTG CAGGAGCATTGCGGA TERM 615 568968 - 568980 + g 91 -7.7 -5.20735 | overlap 568966 CCTGCAGGAGCATTG CGGAT TGC ATCCG TTTCTTTTTTATTGC Cphamn1_0541 572425 - 571586 - | Prephenate dehydratase TERM 616 571973 - 572009 + g 82 -7.9 -4.67607 | overlap 571961 571967 571974 CAGGCCGTAGAGCTC TCCGGCTCTTTTTGACG CGA TGGCAAAATGCGCCGGG TTTCTTTCTTCAGCA Cphamn1_0542 572554 - 573306 + | protein of unknown function DUF28 Cphamn1_0543 573331 - 573891 + | crossover junction endodeoxyribonuclease RuvC TERM 617 574346 - 574373 + G 80 -4.2 -5.08178 | gap 1, overlap 574348 GTCTGGCCCCATCCC TTTTTTGA-CCGG CAT CCGGTTCAGGAGA TTTTTATGTATCTCT Cphamn1_0544 573917 - 574477 + | CDP-alcohol phosphatidyltransferase Cphamn1_0545 575883 - 574480 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ TERM 618 575985 - 575950 - R 90 -4.6 -5.57054 | gap 1, overlap 575969 AACAATGCAAAAAAA CGGGCCGCCTGCCACAA TAC CTGTTTCAGGT-GCCCG AAGAGAACCCGTAAG TERM 619 576359 - 576377 + r 74 -11 -2.64155 | overlap 576356 576356 TGTAAACTGCCTGGA TGCCGGAT CAA GTCCGGCA TGACTTTAGGGGGGG TERM 620 576435 - 576452 + r 79 -9.9 -3.80437 | overlap 576433 GCGTTTACTGGGAGG GGCGAAA AATT TTTCGCC TGTTTTGATCGTTTT TERM 621 576630 - 576648 + r 74 -11 -2.64155 | overlap 576627 576627 TGTAAACTGCCTGGA TGCCGGAT CAA GTCCGGCA TGACTTTAGGGGGGG TERM 622 576706 - 576723 + r 79 -9.9 -3.80437 | overlap 576704 GCGTTTACTGGGAGG GGCGAAA AATT TTTCGCC TGTTTTGATCGTTTT TERM 623 576901 - 576919 + r 74 -11 -2.64155 | overlap 576898 576898 TGTAAACTGCCTGGA TGCCGGAT CAA GTCCGGCA TGACTTTAGGGGGGG TERM 624 576977 - 576994 + r 79 -9.9 -3.80437 | overlap 576975 GCGTTTACTGGGAGG GGCGAAA AATT TTTCGCC TGTTTTGATCGTTTT Cphamn1_0546 577988 - 577188 - | Inositol-phosphate phosphatase Cphamn1_0547 578389 - 578865 + | TspO and MBR like protein Cphamn1_0549 579756 - 579220 - | hypothetical protein TERM 625 579658 - 579669 + g 72 -3.6 -4.88295 | overlap 579641 TGAAGTCGTCAGTGC CGGC TCAG GCTG TTTTTCCATTTCTTT TERM 626 579830 - 579851 + r 100 -14.5 -4.6644 | opp_overlap 579830 TAAGATAGAAAAAAA GAAGCCGTC TCCT GACGGCTTC TTTTTGAAGTGTATT TERM 627 579851 - 579830 - R 100 -14.5 -5.80248 | opp_overlap 579830 TAAGATAGAAAAAAA GAAGCCGTC TCCT GACGGCTTC TTTTTGAAGTGTATT Cphamn1_0550 581871 - 579880 - | acetate/CoA ligase TERM 628 581715 - 581727 + g 70 -2.7 -4.78107 | CCGGATCTTTCTGGG CTTTA GCG TAGAG TTTTTCATACTCGTC TERM 629 581908 - 581898 - R 77 -4.6 -5.08601 | TTAGGTTAACAAAAA GGGA CGC CCCC CTCACCTTAGCGGAT Cphamn1_0551 584577 - 582157 - | leucyl-tRNA synthetase TERM 630 583664 - 583684 + g 86 -5.4 -5.27023 | gap 1, opp_overlap 583664 583666, overlap 583667 GGATTGACCGCAAAT GATCCGGTG AACA CGCCGG-TC TTTTCTTTTTGCAGT TERM 631 583667 - 583682 + g 76 -8.2 -4.25502 | opp_overlap 583666 583664, overlap 583664 TTGACCGCAAATGAT CCGGTG AACA CGCCGG TCTTTTCTTTTTGCA TERM 632 584635 - 584612 - R 100 -12.4 -6.11644 | opp_overlap 584612 584629 TGATTGAAAAAAAAA GCTGTGCAGC ATTC GCAGCACAGC TTTACCCTAAACTGA TERM 633 584612 - 584635 + r 95 -12.4 -3.60627 | opp_overlap 584612, overlap 584629 TGATTGAAAAAAAAA GCTGTGCAGC ATTC GCAGCACAGC TTTACCCTAAACTGA Cphamn1_0552 587139 - 584935 - | Polyribonucleotide nucleotidyltransferase TERM 634 586252 - 586276 + g 73 -2.8 -4.96848 | CTTTGAAGGATCGGC CGCGATATCT TCTGC AGTTATCTCG TTTTTATATCGGCCA Cphamn1_0553 588143 - 587277 - | pantoate/beta-alanine ligase TERM 635 587427 - 587457 + g 82 -12.6 -3.406 | opp_overlap 587453 AATGGTTGCATAGTC GATTATCGCGTCGG GAG CCGAAGCGATAACC TTCGTTACCTCTTCA TERM 636 588087 - 588106 + g 71 -5 -4.46155 | gap 1, opp_overlap 588078, overlap 588083 588090 TATGAACTGATGCTT CAGGCGGAG GCT TTCCGC-TG TTTTCTGCATCTCTG Cphamn1_0554 588940 - 588191 - | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase TERM 637 589065 - 589055 - H 74 -5.4 -4.62471 | opp_overlap 589055 589053 GCGAACTGTGAAAAA TGTG ATG CACA TCTTTTTCACGGTGC TERM 638 589576 - 589589 + G 74 -3.7 -4.98531 | CATTATGGCGGGAGT GGGGC ATTT GACCC TTTTTGGTTTAGGCA TERM 639 589941 - 589925 - g 91 -2.9 -5.72622 | TCTACAAAGAAAAAA GCCAATG AAG CATCTGC AGCGTTTCAGCGATT Cphamn1_0555 589220 - 590446 + | protein of unknown function DUF81 TERM 640 590748 - 590728 - g 71 -6.2 -4.42386 | gap 1, opp_overlap 590729, overlap 590729 590730 GCCCGATTCAGAAAA GCTGGCGAA ATTT TTCGCCA-C TTGGTGAGGATCGCT Cphamn1_0556 590604 - 590870 + | conserved hypothetical cytosolic protein Cphamn1_0557 590965 - 591234 + | transcriptional regulator, XRE family TERM 641 591896 - 591911 + G 91 -10.4 -4.56597 | opp_overlap 591895 TGCTTTTGAAGATAC GCGACC TCGA GGTCGC TTTTTCAGGCAGAAA Cphamn1_0559 591829 - 592851 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 642 593299 - 593281 - g 82 -11.8 -3.64236 | overlap 593273 AGGCAAACTGGTAAA CGCATTTC TTC GAAATGCG GGAGACCAGGATGTC TERM 643 594420 - 594406 - g 76 -7.1 -4.56597 | opp_overlap 594394 GGCGGCTGTGAAAAA CGGTC TGGTT GACCG GATCGGCGGATTGCC Cphamn1_0560 592913 - 594703 + | signal peptide peptidase SppA, 67K type Cphamn1_0561 594944 - 594810 - | hypothetical protein TERM 644 595099 - 595109 + G 74 -4 -4.98436 | GATCTTCTTGATATC GAAA CCA TTTC TTTTTCTGATGTTAC Cphamn1_0562 594946 - 595563 + | hypothetical protein TERM 645 595747 - 595736 - g 84 -2.2 -5.60993 | GCGGCGAGAAAAAAA CTGC GCTC GCAA TCCTGGCTTTTTACT TERM 646 596225 - 596237 + G 71 -10.5 -3.13403 | overlap 596222 TTGAGAACATCTCAT CCCGG TCA CCGGG TGTTCATGAAGGAGC Cphamn1_0563 595577 - 596269 + | hypothetical protein Cphamn1_0564 596664 - 596488 - | hypothetical protein Cphamn1_0565 597860 - 596667 - | arsenical-resistance protein Cphamn1_0566 598189 - 598004 - | protein-tyrosine-phosphatase Cphamn1_0567 598596 - 598216 - | transcriptional regulator, ArsR family TERM 647 598462 - 598446 - G 70 -8.7 -3.62849 | opp_overlap 598457 598460 CGGATGAAATCAGAA CTCCCAT GTG ACGGGAG GCTGTGGCCCCTGTT TERM 648 598784 - 598754 - H 77 -6.9 -4.55128 | gap 1, opp_overlap 598758, overlap 598755 AGGGGGAAAGTAAAA CCAACCATACC-GC AAAG GCTGGGATGGTTGA CTGCGGCGGAGTCAT Cphamn1_0568 598811 - 599131 + | hypothetical protein TERM 649 599176 - 599193 + F 79 -9.9 -3.79849 | opp_overlap 599175 599174, overlap 599188 TTAATATTGATAATG TGTAGCC TTTT GGCTACA TTGTTGCTATGGTTG Cphamn1_0569 599202 - 599492 + | addiction module killer protein Cphamn1_0570 599502 - 599828 + | putative transcriptional regulator Cphamn1_0571 600029 - 600313 + | transcriptional regulator, XRE family TERM 650 601822 - 601798 - g 74 -4.1 -4.9725 | ACCTCGAGATAAAAA CGGGTCGCTCG TTA CGACAGATCCG GAAAAAACTCTGGCA Cphamn1_0572 600423 - 601958 + | transposase IS4 family protein Cphamn1_0573 602508 - 602203 - | putative transcriptional regulator TERM 651 602825 - 602840 + H 76 -4 -5.08011 | CTTTCCCTACTTATT GTATCT AATT GGATAC TTTTTTGCAAGTTTT Cphamn1_0575 602987 - 603145 + | hypothetical protein TERM 652 604158 - 604171 + T 86 -3.1 -5.50499 | overlap 604147 TGAGCTCCGGCAGCG GCGAT TTCC ATTGC TTTTTTTAGCTGTCG Cphamn1_0577 607648 - 604880 - | Phosphoenolpyruvate carboxylase TERM 653 607931 - 607943 + G 74 -4.8 -4.88687 | TATTATTGGCGCTGT CGCT ATGGG AGCG TTGTTTTTTGTTTCG Cphamn1_0578 607878 - 608630 + | photosystem P840 reaction center cytochrome c-551 TERM 654 608704 - 608672 - T 79 -11.3 -3.02109 | opp_overlap 608677 608698, overlap 608677 GTACATATGATAAAG GAAAAGCCCCGGAGC AGC ACTTCGGGGCTTTTT TCATGGTGAAAAATA TERM 655 608699 - 608677 - T 100 -11.2 -4.63479 | opp_overlap 608677 608698, overlap 608672 TATGATAAAGGAAAA GCCCCGGAGC AGC ACTTCGGGGC TTTTTTCATGGTGAA TERM 656 608677 - 608699 + T 100 -12.7 -5.1861 | opp_overlap 608672 608677, overlap 608698 TATGATAAAGGAAAA GCCCCGGAG CAGCA CTTCGGGGC TTTTTTCATGGTGAA Cphamn1_0579 609084 - 608728 - | 7-cyano-7-deazaguanine reductase TERM 657 609547 - 609573 + G 79 -8.6 -4.37658 | overlap 609549 609550 TAGGGATGACCAGTG TAACCGCGGCCA GGA TGGGCGCGGATG TTTTGTCGACGGATT TERM 658 609549 - 609571 + G 73 -9 -3.79419 | overlap 609547 609550 GGGATGACCAGTGTA ACCGCGGCCA GGA TGGGCGCGGA TGTTTTGTCGACGGA TERM 659 609550 - 609570 + G 78 -12.5 -2.8733 | overlap 609549 609547 GGATGACCAGTGTAA CCGCGGCCA GGA TGGGCGCGG ATGTTTTGTCGACGG Cphamn1_0580 609252 - 609953 + | Methyltransferase type 12 TERM 660 610657 - 610675 + G 70 -9.6 -3.31726 | opp_overlap 610657 610655, overlap 610655 GATGCCGGTATAAGA GCTTTCTG TGA CGGAAAGC TGTTGTATCAGGACA Cphamn1_0581 609946 - 610797 + | hypothetical protein TERM 661 611053 - 611043 - g 71 -6.8 -4.15044 | TTTCTTCTCAAGAAA GGCT TGC AGCC TAAGTCTATTGCCAG Cphamn1_0582 610806 - 611798 + | integrase family protein TERM 662 611800 - 611781 - f 70 -7.2 -3.97834 | gap 1 GAAGTCTATGATAAA GCTCAT-CC CAG GGCATGAGC ATCGACGGAACCAGA Cphamn1_0583 611870 - 612199 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 663 612212 - 612233 + F 100 -17.3 -3.60151 | TAATGTGACGTGTGA CAGGGCCGG AACT CCGGCCCTG TTCTACTTTGAACAC TERM 664 612627 - 612640 + G 76 -5.9 -4.63218 | GATATGGCCACAGAG GCGGG TATT CCTGC TTTTATTACGAGAAA TERM 665 612849 - 612822 - g 74 -9.8 -3.5241 | opp_overlap 612819, overlap 612820 612823 GACCTTGTAGAAAGA GGGCATCGGCTG GTTG CAGACGATGCCG TGGTCATTAACCGGA TERM 666 612848 - 612823 - g 78 -13.3 -2.71125 | opp_overlap 612819, overlap 612822 612820 ACCTTGTAGAAAGAG GGCATCGGCTG GTTG CAGACGATGCC GTGGTCATTAACCGG TERM 667 612900 - 612877 - g 76 -3.2 -5.12707 | gap 1, opp_overlap 612877 612880, overlap 612880 GGAAAGGTGAAAAAA CACTGATTGCC TCC GGGAATCA-TG TTATCGGCCATTTTA Cphamn1_0584 612270 - 613289 + | HPr kinase TERM 668 613352 - 613297 - g 89 -14.8 -3.0297 | opp_overlap 613309, overlap 613299 613309 ATGAATAGTAAAGGA GAGCCAGACAAACAGCAGGCCACGCA GCCT TGCTTTACCGGCTGTTTGTCTGAATC CTCAACTGCTCCGGC TERM 669 613350 - 613299 - g 74 -11.6 -3.0623 | opp_overlap 613309, overlap 613297 613309 GAATAGTAAAGGAGA GCCAGACAAACAGCAGGCCACGCA GCCT TGCTTTACCGGCTGTTTGTCTGAA TCCTCAACTGCTCCG TERM 670 614303 - 614287 - g 72 -3.6 -4.89567 | GTGGAAAACATAAAA CCGGAA GACTT TGCCGG CCTTGAGCGCGCCAG TERM 671 614710 - 614694 - g 70 -10.1 -3.25823 | TGTGCTGTATACCAA TGCAGGC AAC GCCCGCA GGAATTTCGCCAGTG Cphamn1_0585 613282 - 615168 + | extracellular solute-binding protein family 5 Cphamn1_0586 615487 - 616452 + | binding-protein-dependent transport systems inner membrane component TERM 672 616675 - 616696 + G 70 -9.5 -3.24365 | overlap 616673 CAGGGCCACCGGGCC TGGGCAAGA CTAC TCTTGCTCA TATTATCGCGTCTGA Cphamn1_0587 616500 - 617516 + | Holliday junction DNA helicase RuvB TERM 673 617694 - 617707 + F 77 -5.3 -5.02287 | GGTGCTAATGCCATT TAGCT ATCC AGCTA TTTTGTGTTTTTCTC TERM 674 618269 - 618289 + G 74 -4 -5.03715 | opp_overlap 618269 TCTTGCCGATGAAAA GTATGCAG ACGCC CTGAATAC TTTTTTACGCATCCT Cphamn1_0588 617790 - 619505 + | Tetratricopeptide TPR_2 repeat protein TERM 675 619682 - 619699 + T 91 -7 -5.4588 | CGGGTAATTGGTAGG GGCGAA AAATCG TTCGCC TTTTTTGTCATTTTC TERM 676 619780 - 619814 + T 80 -10.9 -3.40134 | gap 1, opp_overlap 619785, overlap 619785 619813 TCACTTGTCACTAAA AAAAAGGGTGCTTCGA GAAA TCGA-GCACCCTTTTC TGTTTCAGATCCTTT TERM 677 619785 - 619809 + T 95 -10.8 -4.79451 | gap 1, opp_overlap 619785, overlap 619780 TGTCACTAAAAAAAA GGGTGCTTCGA GAAA TCGA-GCACCC TTTTCTGTTTCAGAT TERM 678 619809 - 619785 - T 100 -10.8 -5.86061 | gap 1, opp_overlap 619785 619780 TGTCACTAAAAAAAA GGGTGCTTCGA GAAA TCGA-GCACCC TTTTCTGTTTCAGAT Cphamn1_0589 623392 - 619844 - | pyruvate flavodoxin/ferredoxin oxidoreductase domain protein TERM 679 620270 - 620293 + g 71 -6 -4.38927 | GTAGGCGTTGCCATA GGTCATGGAA ATCA TTCCAAGATC TTTCTTCTGTAAAGG TERM 680 620950 - 620966 + g 70 -10.1 -3.27029 | opp_overlap 620950, overlap 620948 CGGAAAACTCGAAGA GCGGCTG CTG CAGCTGC TGTTCCTTGATAAGA TERM 681 621088 - 621098 + g 74 -2.4 -5.21236 | TCATGTTCAAAGCGT GCCG TTC CGGA TTTTTCTTATCGCTT TERM 682 621865 - 621875 + g 73 -3.2 -5.02074 | CCAGCAGCGTGCCAC CTTC CTT GAGG TTTTTTACAAGGTCG TERM 683 622227 - 622241 + g 71 -7.2 -4.07568 | AAATGACTTTTTGGC TCTTTC TGT GAAAGA TTTTCGAAGACAGCC TERM 684 624358 - 624372 + G 74 -10 -3.53444 | CAGGATGTGTCGAGT CGCTCA ATG TGAGCG TTTCGGCAGGGGTGC Cphamn1_0590 623679 - 624422 + | RNA methyltransferase, TrmH family, group 3 Cphamn1_0591 624563 - 624943 + | glycine cleavage system H protein TERM 685 625637 - 625653 + G 79 -9.3 -4.19414 | CAATCGGGGATGTCG CGCGGCG TAA CGGCGCG TTGTTTATCGTTTCT TERM 686 626073 - 626106 + G 71 -5.3 -4.44667 | gap 1, opp_overlap 626085 TGAACTGCCAGGCTA CTCATTGAAGTACGGG CAA CCCTT-CTTCAGGGAG TTTGTTGTTGAGACG Cphamn1_0592 624952 - 626286 + | Glycine dehydrogenase (decarboxylating) TERM 687 626262 - 626305 + T 80 -8.3 -4.19649 | gap 2, opp_overlap 626269, overlap 626265 ACTCGATGAGTTTGT CTT-GAAACTCGGGGCT-GTC AGCT GACGAGCCCCAGGTTTCTGAG TTCTTCTTTGATTTT TERM 688 626265 - 626301 + T 82 -12.4 -2.7369 | gap 1, opp_overlap 626269, overlap 626262 CGATGAGTTTGTCTT GAAACTCGGGGCT-GTC AGCT GACGAGCCCCAGGTTTC TGAGTTCTTCTTTGA Cphamn1_0593 627172 - 626279 - | dihydrodipicolinate synthase Cphamn1_0594 629019 - 627310 - | DNA repair protein RecN TERM 689 627430 - 627451 + g 80 -10.1 -4.08919 | TTCCTCGTTGAGTTT CCGGACAGT GCTG ACGGTCCGG TTTGCTTTCAGGTTT Cphamn1_0595 630069 - 629059 - | hypothetical protein TERM 690 629356 - 629372 + g 95 -12.3 -4.15222 | AAATGATTCAGGAGT CACCCTC AAT GAGGGTG TTTGTTCAAGGCGGT TERM 691 629508 - 629518 + g 74 -4.6 -4.8048 | opp_overlap 629508, overlap 629499 629498 ATTTTTCAAGGGAAA CGCC TTT GGTG TTTTTACTATAGGGG TERM 692 630157 - 630137 - R 100 -15.5 -4.2349 | CCCGGATATGCAAAA GTCCGGAGA CTG TCTCCGGAC TCGATAAGCTAACTC Cphamn1_0596 630375 - 630166 - | twin-arginine translocation protein, TatA/E family subunit Cphamn1_0597 631142 - 630501 - | phosphatidylserine decarboxylase related protein Cphamn1_0598 631307 - 632311 + | tRNA(Ile)-lysidine synthetase Cphamn1_0599 633576 - 632530 - | hypothetical protein Cphamn1_0600 634024 - 633584 - | Ribonuclease H TERM 693 634085 - 634062 - R 100 -8.9 -5.36441 | opp_overlap 634062 CCTGTAGACAAAAAA GGCTCAACC GGAAAA AGTTGAGCC TTGAATCAGTATGAA Cphamn1_0601 634337 - 634119 - | ribosomal protein L28 Cphamn1_0602 635417 - 634425 - | bacteriochlorophyll/chlorophyll synthetase Cphamn1_0603 636535 - 635498 - | anthranilate phosphoribosyltransferase TERM 694 636381 - 636391 + g 84 -4.6 -5.24129 | CCGGCAACTTCTTCG GGGG TTA CTCC TTTTTTCTGAAGCAA TERM 695 637205 - 637183 - g 77 -12 -3.17382 | AAGAATGAGAGGGAA GTCGCCTGTT TGA AACAGGCGGC AGCAATCAGTGAACA Cphamn1_0604 636784 - 637848 + | peptidase M24 Cphamn1_0605 637981 - 638319 + | CutA1 divalent ion tolerance protein Cphamn1_0606 639474 - 638302 - | DNA-directed DNA polymerase Cphamn1_0607 640491 - 639580 - | branched-chain amino acid aminotransferase Cphamn1_0608 641724 - 640519 - | phosphofructokinase TERM 696 640933 - 640950 + g 100 -7 -5.24129 | opp_overlap 640933 CTCCTGACAGACATA CTTGCC TGCACC GGCAAG TTTTTTGTGCCCGAA Cphamn1_0609 642139 - 643407 + | protein of unknown function DUF214 TERM 697 643632 - 643677 + T 84 -8.3 -4.4267 | opp_overlap 643632, overlap 643626 643633 TGCTCTGTGTCAAGA TGGCTCAATAGCTGGTTGGCT GTTT AGCCGGATAGCTATCCAGCCA TTTTGCCTTTTGACG Cphamn1_0610 644183 - 643704 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 698 643757 - 643775 + g 70 -3 -4.78752 | overlap 643759 CCGCGACGCCTTCTT CGCGGC CGACATA GCCGAG TTTTTCAGTTGTCGT Cphamn1_0611 644318 - 645445 + | hypothetical protein TERM 699 645508 - 645529 + F 100 -13 -4.16943 | GTTGAATCGTTGTAG GGGCAGGC CCCTGT GCCTGCCC TTTTCCGATATCCCC TERM 700 645964 - 645995 + G 85 -13 -3.78778 | gap 1, opp_overlap 645972, overlap 645968 GTCGATACGTCGGCT GCACGACACCGGCCG TAG CGGCTGGTGGC-TGC TTATTGGTCTGATAC TERM 701 645968 - 645992 + G 80 -13.5 -2.97707 | opp_overlap 645972, overlap 645964 ATACGTCGGCTGCAC GACACCGGCCG TAG CGGCTGGTGGC TGCTTATTGGTCTGA Cphamn1_0612 645737 - 646108 + | protein of unknown function DUF805 Cphamn1_0614 647603 - 646659 - | dihydroorotate dehydrogenase family protein Cphamn1_0613 646226 - 646732 + | Protein of unknown function DUF1810 TERM 702 647650 - 647694 + Tr 79 -5 -5.09895 | gap 2, overlap 647652 TGTCTGACCGTTTTC TTCCGCAAGTCTCCCGCCGGAT GAC GTCCGGCGG-AG-CTCCTGGGA TTTTTTACATCCGTG Cphamn1_0615 649830 - 647719 - | alpha-glucan phosphorylase TERM 703 648966 - 648981 + g 72 -4 -4.77757 | opp_overlap 648968, overlap 648968 CCTTCACACGTTCAA TAGCTT CTTC AAGCTG TTTTCCTTTTTCGAG Cphamn1_0616 649983 - 650843 + | metallophosphoesterase TERM 704 650907 - 650880 - T 71 -9.2 -3.31144 | opp_overlap 650864, overlap 650881 GCTTGATTGCCAGAA GGCTGAATAGCT ATTC AGCTATCCAGCT ATCCAGCGCTATCAT TERM 705 650906 - 650881 - T 81 -12.7 -2.58544 | opp_overlap 650864, overlap 650880 CTTGATTGCCAGAAG GCTGAATAGCT ATTC AGCTATCCAGC TATCCAGCGCTATCA Cphamn1_0617 651422 - 650925 - | Ferritin Dps family protein Cphamn1_0619 652317 - 652069 - | hypothetical protein TERM 706 652382 - 652399 + H 81 -6.3 -4.96435 | AGAGTGGTTTGACGT CGGCAAT CATG ATTGTCG TTCTTTTTTTCTTGC TERM 707 652552 - 652583 + H 70 -3 -4.88918 | AGTTCAGTGCAGCTG TTTAGGATCGGG TGCGAATT CCGGGTCCTGAA TTTTATTTGGAATAA Cphamn1_0620 652663 - 653637 + | hypothetical protein Cphamn1_0621 653661 - 653927 + | FeoA family protein Cphamn1_0622 653924 - 654151 + | FeoA family protein Cphamn1_0623 654151 - 656502 + | ferrous iron transport protein B TERM 708 656535 - 656514 - f 74 -3.5 -5.09426 | opp_overlap 656517, overlap 656515 656517 CTGAACCGGAAAAAA CGACGGGAG CAGA CGACCGCCG GTTTGCTCCCGTTTT TERM 709 656517 - 656546 + F 100 -11.5 -4.93696 | opp_overlap 656514 656517 656515 AACCGGAAAAAACGA CGGGAGCAGAC GACCGCCG GTTTGCTCCCG TTTTTGCTATTTCAA TERM 710 656546 - 656517 - f 71 -9.3 -3.39328 | gap 1, opp_overlap 656517, overlap 656514 656515 AACCGGAAAAAACGA CGGGAGCAGA-CGA CCG CCGGTTTGCTCCCG TTTTTGCTATTTCAA Cphamn1_0624 656581 - 656808 + | hypothetical protein Cphamn1_0625 657459 - 656974 - | hypothetical protein Cphamn1_0626 657590 - 658006 + | Rieske (2Fe-2S) domain protein Cphamn1_0627 658016 - 658471 + | hypothetical protein Cphamn1_0628 660312 - 658456 - | Carbamoyl-phosphate synthetase large chain domain protein Cphamn1_0629 660405 - 661817 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 711 661998 - 662019 + F 95 -14.5 -3.19026 | TGTCCAGACTCTGTA GGGGCGAAA ACTG TTTCGCCCC TTCGATGTTACAATC Cphamn1_0630 662118 - 663440 + | Glycine hydroxymethyltransferase Cphamn1_0631 665466 - 663574 - | DNA primase TERM 712 663776 - 663792 + g 80 -10.1 -4.01853 | opp_overlap 663772, overlap 663772 GAATCGAGAAAGGCG GTCAGGC AGC GCCTGGC TTTCTGCTGCTGTTC TERM 713 663841 - 663899 + g 100 -14.7 -4.03137 | gap 1, overlap 663842 663843 CCGTTCACTGACGGG T-TGTTCTATGAGCAGCCCAGAGGCAAG GTCA CGCGCTTCGGGGCTGCTCATAGAACCTA TTTCATTGGTTATAT TERM 714 663842 - 663897 + g 100 -19.8 -3.59634 | overlap 663841 663843 CGTTCACTGACGGGT TGTTCTATGAGCAGCCCAGAGGCAAG GTCA CGCGCTTCGGGGCTGCTCATAGAACC TATTTCATTGGTTAT TERM 715 663843 - 663896 + g 100 -23.3 -2.74696 | overlap 663842 663841 GTTCACTGACGGGTT GTTCTATGAGCAGCCCAGAGGCAAG GTCA CGCGCTTCGGGGCTGCTCATAGAAC CTATTTCATTGGTTA TERM 716 664089 - 664107 + g 100 -6 -5.75342 | overlap 664092 TGATAAAGGTTTTCT CAAGCACT GAA AGTGCTTC TTTTTTTTGAGCCGG TERM 717 664092 - 664104 + g 87 -7.7 -4.96028 | overlap 664089 TAAAGGTTTTCTCAA GCACT GAA AGTGC TTCTTTTTTTTGAGC TERM 718 664295 - 664311 + g 86 -5.1 -5.252 | ACGGTTTTCAGGATT TCCCG GATCGCA CGGGA TTTTTTCTCGGGCTG Cphamn1_0632 665872 - 665964 + | hypothetical protein Cphamn1_0633 665977 - 666723 + | MotA/TolQ/ExbB proton channel Cphamn1_0634 666729 - 667262 + | hypothetical protein TERM 719 667304 - 667287 - g 70 -8.3 -3.76224 | overlap 667288 GGTTGATTCACCAAA TGGCCGG GATT CCGGCCG CAAGGCAAAACGCAG TERM 720 667303 - 667288 - g 74 -11.8 -2.8552 | overlap 667287 GTTGATTCACCAAAT GGCCGG GATT CCGGCC GCAAGGCAAAACGCA Cphamn1_0635 667264 - 667812 + | Biopolymer transport protein ExbD/TolR TERM 721 668266 - 668254 - g 78 -4.1 -5.16472 | overlap 668260 AAAAAGGTTAAAAAA GAAGA GGC TCCTC CGGAACAGACTCTGG Cphamn1_0636 667846 - 668643 + | TonB family protein TERM 722 668709 - 668690 - T 77 -7.2 -4.43272 | gap 1, opp_overlap 668684, overlap 668676 AGGTAAAAGGCAAAA TATCCC-GG GAT CCAGGGATA TCAGGCTTTTCTCCG Cphamn1_0637 668946 - 668710 - | hypothetical protein Cphamn1_0638 670114 - 668921 - | acetylornithine and succinylornithine aminotransferase TERM 723 669368 - 669345 - G 82 -11.8 -3.63968 | gap 1 GCTGAAAGCGGCAAA CCTCCGCCAAG AGG CTTGGCG-AGG CATACCAGATCCGGA TERM 724 669638 - 669608 - G 100 -16.8 -3.06915 | opp_overlap 669579 ATCGATGTCATTGAA GCCGATGCTTCCGG TCG CCGGCAGCAGCGGC TCGAAACCGTCGGTA TERM 725 669717 - 669729 + g 82 -7.7 -4.61747 | opp_overlap 669716 AAACAGTTGGAAAGG GAGAG CAC CTCTC TTTTATCGTTATTGC Cphamn1_0639 670417 - 670217 - | hypothetical protein Cphamn1_0640 671732 - 670446 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 726 671223 - 671200 - G 76 -7.4 -4.39166 | TTTGAGAGAGTAAAA CGGCTCATCT CTCC AATTGAGCCG GCAAGCTCGACCCCT TERM 727 672246 - 672230 - g 87 -7.3 -5.00616 | CCGTCTTGTAAAAAA CGCTCTT GTC AAAAGCG TTCGGGGTAACAAGG Cphamn1_0641 672072 - 672482 + | transcriptional regulator, BadM/Rrf2 family TERM 728 672532 - 672565 + G 79 -8.8 -4.21194 | overlap 672561 GACATAACAGGACTT GTGGGCTCAACGCC CCTGGT GGCGTTGAGCAGGC TTTTCGGTGATGGAA Cphamn1_0642 672502 - 673422 + | cysteine synthase TERM 729 673537 - 673527 - g 100 -4.6 -5.77853 | AACGGTGAAAAAAAA GAGG TTG CCCC GGAATCGATGACCGT Cphamn1_0643 673491 - 673712 + | thiamine biosynthesis protein ThiS TERM 730 673932 - 673911 - g 70 -2.1 -4.9725 | gap 1, opp_overlap 673917, overlap 673912 673913 ATTTCGAGACAAAAA TGCGC-GCGC TCT GCGATGCGCG GGGGGTTATTGCGGT Cphamn1_0644 673709 - 674941 + | O-acetylhomoserine aminocarboxypropyltransferase TERM 731 675047 - 675079 + G 83 -8.9 -4.31433 | opp_overlap 675047 675048, overlap 675048 675078 CAAGGGTGATGATAA TCGGTGCCGGGGGGC TTG GCGCTCCGGCGGCGC TTTATTGTGCCGCTG TERM 732 675048 - 675078 + G 79 -12.4 -3.18378 | opp_overlap 675047 675048, overlap 675047 AAGGGTGATGATAAT CGGTGCCGGGGGGC TTG GCGCTCCGGCGGCG CTTTATTGTGCCGCT Cphamn1_0645 674938 - 675744 + | UBA/THIF-type NAD/FAD binding protein Cphamn1_0646 675766 - 676206 + | Mov34/MPN/PAD-1 family protein Cphamn1_0647 676196 - 676672 + | hypothetical protein Cphamn1_0648 676691 - 676939 + | SirA family protein TERM 733 677526 - 677548 + T 74 -6.9 -4.30559 | overlap 677511 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_0649 679104 - 677707 - | hypothetical protein TERM 734 677773 - 677787 + g 70 -8.6 -3.73072 | opp_overlap 677773 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_0650 679272 - 679877 + | hypothetical protein TERM 735 679943 - 679953 + G 100 -3.2 -5.86465 | CCCGGAAGTTTATCG CAGG TGT CTTG TTTTTTTGTCTTGTT TERM 736 680237 - 680288 + G 100 -8.8 -5.7946 | gap 1, opp_overlap 680242 680247, overlap 680238 680241 GGGGGGCTAACCTGA GCAGAGGAAAGGTTCGC-GACGTTG ATC TAACGTCAGCAAACCTTTCCGATGG TTTTTTTATTGAAAC TERM 737 680238 - 680287 + G 90 -12.3 -4.06592 | gap 1, opp_overlap 680242 680247, overlap 680237 680241 GGGGGCTAACCTGAG CAGAGGAAAGGTTCGC-GACGTTG ATC TAACGTCAGCAAACCTTTCCGATG GTTTTTTTATTGAAA TERM 738 680241 - 680284 + G 77 -12.6 -2.74947 | gap 1, opp_overlap 680242 680247, overlap 680238 680237 GGCTAACCTGAGCAG AGGAAAGGTTCGC-GACGTTG ATC TAACGTCAGCAAACCTTTCCG ATGGTTTTTTTATTG TERM 739 680283 - 680242 - g 95 -17.6 -2.80994 | gap 1, opp_overlap 680241 680238 680237, overlap 680247 GCTAACCTGAGCAGA GGAAAGGTTCGC-GACGTT GATCT AACGTCAGCAAACCTTTCC GATGGTTTTTTTATT TERM 740 680278 - 680247 - g 82 -10.3 -3.86202 | gap 1, opp_overlap 680241 680238 680237, overlap 680242 CCTGAGCAGAGGAAA GGTTCGC-GACGTT GATCT AACGTCAGCAAACC TTTCCGATGGTTTTT Cphamn1_0651 679882 - 680784 + | pentapeptide repeat protein TERM 741 680897 - 680918 + F 100 -12.3 -4.2704 | overlap 680898 AAAAACAGGCAGAGT TGATCCCCC GAAA GGGGGATCG TTTCTTGGTAGTGAC TERM 742 680898 - 680917 + F 93 -13.6 -3.15742 | overlap 680897 AAAACAGGCAGAGTT GATCCCCC GAAA GGGGGATC GTTTCTTGGTAGTGA Cphamn1_0652 681014 - 682249 + | hypothetical protein Cphamn1_0653 682246 - 683046 + | cytochrome c assembly protein TERM 743 683097 - 683109 + T 100 -3.3 -6.79027 | overlap 683098 ACAGGGAAAGGCAGG CCGTG GTA CACGC TTTTTTTTTTTTAAG TERM 744 683098 - 683108 + T 79 -6.8 -4.63756 | overlap 683097 CAGGGAAAGGCAGGC CGTG GTA CACG CTTTTTTTTTTTTAA Cphamn1_0654 683380 - 683120 - | hypothetical protein TERM 745 683449 - 683463 + H 87 -5.6 -5.36441 | opp_overlap 683449 TTTTTATGGACTAGA CGAGAG AAA CCCTCG TTTTTTCTGTCCGGA TERM 746 684403 - 684415 + G 71 -5.5 -4.57569 | AGACATATGATCTTG GACTC TTC GGGTC TTTTTCCAAAGGTGA Cphamn1_0655 683562 - 685868 + | TonB-dependent receptor TERM 747 686049 - 686038 - T 80 -4.4 -5.24449 | opp_overlap 686044, overlap 686041 686042 GATAAAGGCAAAAAA CGAT CAGG ATCG GGTCAGGAGAGATCC TERM 748 686044 - 686076 + T 74 -9.9 -3.40522 | opp_overlap 686038 686042 686041 686060 GGCAAAAAACGATCA GGATCGGGTCAGG AGAGATC CCTGATCAGATCC TTGTGCTGCGGGAAT Cphamn1_0656 686543 - 686052 - | protein of unknown function DUF985 Cphamn1_0657 687054 - 686530 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 749 687505 - 687521 + G 70 -2.1 -5.00616 | overlap 687503 AAGGAGATGCATATT GGAGGAG GCA CTCCGAC TTTTTTCAGCCCGGA Cphamn1_0658 687175 - 688596 + | oxygen-independent coproporphyrinogen III oxidase TERM 750 688629 - 688644 + F 100 -10.4 -5.71712 | TTATAGAGATGTAGA GGTGGC TTCG GCCACC TTTTTTTATATGGCG Cphamn1_0659 688809 - 689522 + | phosphoribulokinase/uridine kinase Cphamn1_0660 689503 - 690072 + | nitroreductase Cphamn1_0661 692037 - 690085 - | ABC transporter-related protein TERM 751 690236 - 690248 + g 100 -7.7 -6.07627 | TCTTTCTTTTTTTCT TCCAG CTG CTGGA TTTTTTTTTCAAGCT TERM 752 692610 - 692622 + H 86 -7.7 -4.87037 | CCGGCATGATTTTCT GTCTG TTG CAGAC TTTTTCATGTATATT TERM 753 692652 - 692663 + H 77 -4.4 -5.03715 | TTTATCAAGGCTTCT CATC AGGT GATG TTTTTTCACGCTGAT Cphamn1_0662 692681 - 693517 + | hypothetical protein TERM 754 693629 - 693645 + G 78 -10.1 -3.82084 | AGTGGTGCGGCAGGA TCTCCCC GGG GGGGGGA TTATTCATATTGACC Cphamn1_0663 693528 - 694940 + | hypothetical protein TERM 755 695712 - 695689 - gf 71 -9.6 -3.06492 | overlap 695702 GGACGTACCGTAAGA GGGCAAGGAA GGAT TTCCTTGCCG TCGGCATGAAAAAGA TERM 756 696416 - 696436 + GF 100 -8.2 -5.30686 | CCTCGTGATGAACCT GGACCGGC TGCTC GCCGCTCC TTTTTTGTGCCTGTT Cphamn1_0664 695049 - 696545 + | transposase, IS5 family, putative Cphamn1_0665 696520 - 697089 + | hypothetical protein TERM 757 697395 - 697417 + G 73 -5.4 -4.64861 | CAGATATTGTGACTC GTCCCTGGGC TCA GTCCGCGGGC TTTATTTTCGGCAGA Cphamn1_0666 697091 - 698137 + | Glutathione synthase TERM 758 698172 - 698152 - T 84 -6.8 -5.06414 | opp_overlap 698152 698154 GCGTTGCAACAAAAA GCCCCC TGTGCTGGC GGGGGC TTTTCTGCTGAACCA TERM 759 698152 - 698172 + T 77 -6.8 -4.46212 | gap 1, opp_overlap 698152, overlap 698154 GCGTTGCAACAAAAA GCCCCCTGT GCTG GC-GGGGGC TTTTCTGCTGAACCA Cphamn1_0667 699373 - 698198 - | succinyl-CoA synthetase, beta subunit TERM 760 699526 - 699536 + H 70 -6.8 -4.05033 | opp_overlap 699515 CAAAGCGAACGGAGC GGAG AAA CTCC TTTCTATCCGCTCAA TERM 761 699704 - 699740 + G 70 -9.5 -3.21276 | gap 1, opp_overlap 699703, overlap 699702 ATGAGAAAAAAGAGG TGCCTGTTGGCG-CGG TGGTGT TTGACGCCAACGGGCA TATTATCGGCAGAGG Cphamn1_0668 699637 - 700107 + | CMP/dCMP deaminase zinc-binding Cphamn1_0669 701621 - 700572 - | hypothetical protein Cphamn1_0670 703301 - 702036 - | 2-nitropropane dioxygenase NPD TERM 762 702116 - 702148 + g 82 -10.5 -3.94393 | overlap 702117 702139 702143 CGCGGAAGATGTCTT CGGCTGACGGAAGCT GCC AGCTGCCGTCAGACA TTCTGTTTGTGGTTT TERM 763 702117 - 702147 + g 83 -14 -2.95009 | overlap 702116 702139 702143 GCGGAAGATGTCTTC GGCTGACGGAAGCT GCC AGCTGCCGTCAGAC ATTCTGTTTGTGGTT TERM 764 702976 - 702988 + g 76 -4.7 -5.03145 | CAGTTCATGAAAATC GCGCC GTT GCCGC TTTTTTGAGAGATTG TERM 765 703419 - 703439 + H 90 -4.7 -5.50499 | CATATAAAACCATAC GCTCTTCTT ATA AATAAGGGC TTTTTTTGGCTCTCA TERM 766 703907 - 703895 - g 82 -10.5 -3.82604 | overlap 703903 GCAGGGAATGAACAA GGCGG AAA CCGCC CAGCAGCATGGTGAT Cphamn1_0671 703602 - 704345 + | phosphoglycerate mutase 1 family TERM 767 704996 - 704965 - g 70 -10.2 -2.924 | opp_overlap 704963, overlap 704964 GAATTCGGCAGAAAG CTCTATGTCATCCG CCGC CGGATTACAAAGAG AGTTAAATATACGGC TERM 768 706399 - 706367 - g 79 -5.6 -4.96848 | gap 2, opp_overlap 706369 706376, overlap 706369 706377 TTTCGGACAGAAAAA GTG-CGGA-CAAGAGC ATG GCTCCTGTTCCGGCTC TGCTTGCGGCTTCCG Cphamn1_0672 704467 - 709071 + | Glutamate synthase (ferredoxin) TERM 769 709499 - 709521 + G 71 -7 -4.2558 | opp_overlap 709495 709502, overlap 709497 709502 ACCATCAAGAATATC GAATGCTCGA TAA TTGAGCATGC TTTTGATCAGGGCTG Cphamn1_0673 709115 - 710590 + | glutamate synthase, NADH/NADPH, small subunit TERM 770 710912 - 710940 + G 79 -6.7 -4.72272 | overlap 710914 710916 TCCATGGTGATGCAG CACGTTCTTGACA GTC TGGCAAGAATGGG TTTTTGATGAAACGG Cphamn1_0674 710678 - 710947 + | hypothetical protein TERM 771 711521 - 711545 + G 80 -10.7 -3.70902 | ATGTCGAAACGATTC TCGCACGTCTG CTT CAGGCGTCCGA TTTCAATCTCGAAAG Cphamn1_0675 710986 - 712299 + | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 772 712446 - 712470 + F 100 -10.8 -5.85737 | opp_overlap 712436 712446 ACAAAGCCTGTAAAA GCCTGCAAAT AAAGA GTTTGCAGGC TTTTTTTATTCCTCT TERM 773 712470 - 712446 - f 82 -10.1 -4.13343 | opp_overlap 712446, overlap 712436 ACAAAGCCTGTAAAA GCCTGCAAA TAAAGAG TTTGCAGGC TTTTTTTATTCCTCT Cphamn1_0676 712599 - 713771 + | integrase family protein TERM 774 714007 - 713980 - g 91 -7 -5.08601 | opp_overlap 713998, overlap 713981 TTATGGCAAGAAAAA GGAGGAGAACAA GTTC CTGTTCCCCTCG ACTACCGTGGCCGGG TERM 775 714006 - 713981 - g 77 -10.5 -3.64438 | opp_overlap 713998, overlap 713980 TATGGCAAGAAAAAG GAGGAGAACAA GTTC CTGTTCCCCTC GACTACCGTGGCCGG Cphamn1_0677 713752 - 714720 + | hypothetical protein TERM 776 714740 - 714792 + T 71 -9 -3.39908 | gap 1, opp_overlap 714740, overlap 714738 714738 714741 TTGAGTAAGAGCCAA GTTCAGCCG-CGGGCTTGCCGGAGC CAAA GCGGAGGCAAGACCGTCGGCTGGAA TCTGTTTTGGGCCAC TERM 777 714741 - 714791 + T 81 -12.5 -2.63623 | gap 1, opp_overlap 714740, overlap 714740 714738 714738 TGAGTAAGAGCCAAG TTCAGCCG-CGGGCTTGCCGGAGC CAAA GCGGAGGCAAGACCGTCGGCTGGA ATCTGTTTTGGGCCA Cphamn1_0678 715131 - 714877 - | hypothetical protein Cphamn1_0679 716545 - 715157 - | Radical SAM domain protein TERM 778 716167 - 716141 - G 82 -10.2 -3.90744 | opp_overlap 716144 CTCGCCGCCAAAGAA GGCGACACCAAG CGT CTTAATATCGCC CGACTGCTTAATTAA TERM 779 716998 - 716958 - H 76 -2.6 -5.31456 | opp_overlap 716963, overlap 716959 716961 716963 CCAATTTATAAAAAA CCACACCCCGTT-TACCCCC CAT GGCGGTTGAACGGGGT-TAA TTTTTTTTCTGAGAT TERM 780 716963 - 716994 + H 93 -11.6 -4.16605 | gap 1, opp_overlap 716961 716959 716958 716963 TTATAAAAAACCACA CCCCGTTT-ACCCCC CAT GGCGGTTGAACGGGG TTAATTTTTTTTCTG TERM 781 716994 - 716963 - H 74 -9.4 -3.28457 | gap 1, opp_overlap 716963, overlap 716961 716959 716958 TTATAAAAAACCACA CCCCGTT-TACCCCC CAT GGCGGTTGAACGGGG TTAATTTTTTTTCTG Cphamn1_0680 717054 - 717404 + | DNA binding domain protein, excisionase family Cphamn1_0681 717495 - 718142 + | Cobyrinic acid ac-diamide synthase Cphamn1_0682 718139 - 718408 + | hypothetical protein Cphamn1_0683 718412 - 718846 + | hypothetical protein Cphamn1_0684 718843 - 719424 + | conjugal transfer protein precursor TERM 782 719818 - 719806 - g 90 -9.1 -4.67982 | overlap 719810 GCCTATGGAAGAAAA GCAGC GCT GCTGC ATGAAAAATATCTGC TERM 783 719861 - 719871 + G 76 -6.8 -4.46212 | TGGGCAAGGATGGTT CCGA AGG TCGG TTTTATGATCCGAAA Cphamn1_0685 719578 - 721506 + | hypothetical protein Cphamn1_0686 721511 - 723781 + | TRAG family protein Cphamn1_0687 723778 - 724206 + | hypothetical protein TERM 784 725180 - 725218 + G 100 -12.5 -4.85918 | overlap 725184 GGATATCTGTGTGCA TATCCAGC-GGGGCCCGGC CAA GCCGGGCCTCTGCT-GTTA TTTTGTTGTGTGGTC TERM 785 725184 - 725215 + G 100 -20.2 -4.51787 | gap 1, overlap 725180 ATCTGTGTGCATATC CAGC-GGGGCCCGGC CAA GCCGGGCCTCTGCTG TTATTTTGTTGTGTG Cphamn1_0688 724335 - 725264 + | P-type conjugative transfer ATPase TrbB TERM 786 725298 - 725317 + T 74 -7.2 -4.26076 | overlap 725281 725294 TTGCATGAATTCATG CATACATG TCTG CATGTGTG TTTTCATGGCGATGG Cphamn1_0689 726073 - 725321 - | hypothetical protein TERM 787 725412 - 725422 + gT 76 -8.2 -4.1822 | GGTGTTGTATCCCCG CCGG ATT CCGG TTTGTTCAGGTGGCG TERM 788 725542 - 725531 - GT 71 -4.4 -4.67011 | opp_overlap 725531 AAGGGTATGGAAAAA CTCA AGTT TGAG CTTTTTGGGAAGGTC Cphamn1_0690 726836 - 726045 - | hypothetical protein TERM 789 726788 - 726803 + gr 72 -7.6 -4.08394 | GCCGGTTGGTTGGCA GCTCTT TTAC AAGAGC TTTTGAGAGAGGTAT Cphamn1_0691 727314 - 726967 - | mobilizable transposon, xis protein TERM 790 727011 - 727026 + g 71 -6.8 -4.26188 | GCGGTTGTTTCCGTG CAGGGG CTTC CTCCTG TTTTGGATATCTGCG Cphamn1_0692 727395 - 727808 + | hypothetical protein Cphamn1_0693 728004 - 727789 - | hypothetical protein TERM 791 728662 - 728643 - g 78 -6.4 -4.78149 | overlap 728645 GGGATAACCGAAAAA TACCGAGA AAAA TCTCGGAA TGGGGATCACATACT TERM 792 728660 - 728645 - g 77 -9 -4.00465 | overlap 728643 GATAACCGAAAAATA CCGAGA AAAA TCTCGG AATGGGGATCACATA Cphamn1_0694 728604 - 729347 + | Serine/threonine protein phosphatase-like protein Cphamn1_0695 729493 - 730170 + | hypothetical protein Cphamn1_0696 730260 - 731243 + | CheD Cphamn1_0697 731444 - 732337 + | inner-membrane translocator TERM 793 732905 - 732928 + G 100 -10.2 -4.64144 | TCAGCATATCCAGCG GAGCATCGGC GATC GCCGGAGCTC TTTTTGCCAGTTATT Cphamn1_0698 732361 - 733203 + | inner-membrane translocator Cphamn1_0699 733207 - 734067 + | ABC transporter-related protein Cphamn1_0700 734064 - 734783 + | ABC transporter-related protein TERM 794 735315 - 735299 - g 70 -3 -4.77759 | AGAATTCATTAAAAA TGTCCT GAAAA AAGACA AGGTTGCTGTTGTGT Cphamn1_0701 734796 - 735929 + | Extracellular ligand-binding receptor TERM 795 735965 - 735987 + T 74 -6.9 -4.30559 | overlap 735950 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT TERM 796 736204 - 736218 + T 75 -8.6 -3.73072 | opp_overlap 736204 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_0702 737536 - 736205 - | hypothetical protein Cphamn1_0703 737727 - 738182 + | hypothetical protein TERM 797 739629 - 739615 - g 70 -8.6 -3.73072 | opp_overlap 739615 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG Cphamn1_0704 738298 - 739695 + | hypothetical protein TERM 798 739876 - 739854 - f 74 -6.9 -4.30559 | overlap 739874 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG TERM 799 740143 - 740120 - f 83 -3.7 -5.44119 | overlap 740100 740122 740123 CTGATCCGAAAAAAA CAGGCCAGG AAAACA CCTGGCGGG ACAAGCGCAATGCCG TERM 800 740586 - 740608 + F 79 -9 -3.9712 | CAACTATTGCATCAC GCTCGACCGG GTT CCGGAGGAGC TTTATCCTGAAGTGG TERM 801 740773 - 740783 + F 71 -2.4 -5.08824 | AACGACAAATTGGTT CTGG ATA CCCG TTTTTTCGATGAAAG TERM 802 741492 - 741480 - f 71 -7.7 -3.73756 | overlap 741478 TATTCCATTAAAACA TCCAG AAA CTGGA AAAAACTGCCCGGTT TERM 803 741518 - 741498 - f 79 -5.3 -5.1361 | opp_overlap 741503, overlap 741500 AGAAACTGGAAAAAA CTGCCCGGT TCC ACCGAACGG TTGGTCGAGAACACC TERM 804 743005 - 743027 + G 91 -15 -3.35278 | ATCGTCACCCCGAGA TTCGCCAGAT CCC ATCTGGCGAA TTGATGTCTGATTCA TERM 805 743064 - 743046 - g 91 -11 -4.18197 | opp_overlap 743046 ATGTCTGATTCAAAA CGCCAGAC CCA ATCTGGCG TTTTGGAAGACATGT TERM 806 743046 - 743064 + G 84 -10.3 -4.08394 | opp_overlap 743046 ATGTCTGATTCAAAA CGCCAGA CCCAA TCTGGCG TTTTGGAAGACATGT Cphamn1_0706 742704 - 743873 + | protein of unknown function DUF1016 TERM 807 743912 - 743938 + G 78 -5.8 -4.81551 | overlap 743913 ATTTTCGCAACAAGC TGCTGCTCAATC AAT GGTTGATCAGCC TTTTTGGTATCGATC TERM 808 744961 - 744993 + G 73 -9.1 -3.71527 | opp_overlap 744968 AAGGACTATCAGATT CTGAACATGCCCGCA ACA TTCGCGCAGGTTCAG TTTGCCTACTTGACC TERM 809 745398 - 745410 + G 71 -6.9 -4.1552 | TTTCAACAATGCTGC CGGGG GTA CCCTG TTTCTTGACCGGATC Cphamn1_0707 743860 - 747159 + | type III restriction protein res subunit Cphamn1_0708 747156 - 748487 + | conserved hypothetical cytosolic protein Cphamn1_0709 748484 - 750628 + | protein of unknown function DUF87 TERM 810 750756 - 750778 + F 74 -6.9 -4.30559 | overlap 750741 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT TERM 811 750994 - 751008 + F 75 -8.6 -3.73072 | opp_overlap 750994 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_0711 752803 - 752913 + | hypothetical protein Cphamn1_0712 753005 - 754063 + | transposase IS4 family protein TERM 812 754489 - 754504 + F 100 -4 -5.89827 | overlap 754483 TATAATCATTTATTT GGAGAA TAAT TTCTTC TTTTTTTTGATGATT TERM 813 754814 - 754839 + G 74 -7.7 -4.14739 | ATCGAGTCTGCATTT CTGAAAAGC GACACCCG GCTTTTCAG TTTTGCCGTCCATGC Cphamn1_0713 754604 - 755326 + | Domain of unknown function DUF1814 Cphamn1_0714 755866 - 756726 + | hypothetical protein Cphamn1_0715 756723 - 757556 + | Domain of unknown function DUF1814 Cphamn1_0716 759073 - 757577 - | filamentation induced by cAMP protein Fic TERM 814 757963 - 757982 + g 80 -4.2 -5.14563 | gap 1, overlap 757966 AGAGTTTGCTTCCTT CGATCAGGG TTC CCCGGA-CG TTTTTTGGTGAGACA TERM 815 759185 - 759199 + H 70 -2.8 -5.01497 | GACAACAATTTTTCT GGGAAG GGA TTTCTC TTTTTGTATGGTGGT TERM 816 759473 - 759509 + H 100 -16.1 -3.9941 | opp_overlap 759479, overlap 759468 759479 CTATCACCAACCCTC TTAAAAGCCTGTAAGTC AAA GACTTACAGGCTTTAGA TTTAGTTCTGAGACA TERM 817 759503 - 759479 - H 100 -17.3 -4.09739 | opp_overlap 759473 759468 759479 CCAACCCTCTTAAAA GCCTGTAAGTC AAA GACTTACAGGC TTTAGATTTAGTTCT TERM 818 759479 - 759503 + H 100 -17.3 -3.89938 | opp_overlap 759479, overlap 759473 759468 CCAACCCTCTTAAAA GCCTGTAAGTC AAA GACTTACAGGC TTTAGATTTAGTTCT TERM 819 760397 - 760418 + G 74 -7.3 -4.24002 | overlap 760394 TCATGGAGACATCTG GAAGCTTGA CCAT TCCAGCTTC TTTTGAGATTTCCCG TERM 820 760744 - 760729 - g 76 -3.2 -5.1101 | opp_overlap 760731, overlap 760731 GCATCAGTTAAAAAA CTTCTC AAAA GAGATG TTGAACATGCTGTGG TERM 821 761729 - 761764 + G 76 -6.2 -4.59853 | CTCTAAGCAGGTATG TTTCCGGAATTCCG GAAGAGGG CGGCATTCAGGAAA TTTTTCGCGCATTGA Cphamn1_0717 759880 - 762264 + | type III restriction protein res subunit TERM 822 762881 - 762905 + G 83 -5 -5.16841 | ACTGCCGATAGTGGT GATTTGGAAG TCGAT CTTCCCAGTC TTTTTATTGCTATAG TERM 823 763053 - 763026 - g 79 -7.6 -4.4715 | overlap 763027 TGGGAATGCACAAAA TGCAGCAACGGC AGTT GCCGCTGGTGCT GGTAGGCGCCGGATT TERM 824 763052 - 763027 - g 76 -11.1 -3.27808 | overlap 763026 GGGAATGCACAAAAT GCAGCAACGGC AGTT GCCGCTGGTGC TGGTAGGCGCCGGAT TERM 825 763110 - 763125 + G 74 -7.6 -4.13014 | ATGCCAAATCATATG CTGAAC GCCT GTTCAG TTTTCCGGATATAGG Cphamn1_0718 762443 - 763636 + | hypothetical protein TERM 826 763847 - 763831 - T 79 -5.1 -5.14477 | opp_overlap 763831 CATATATTGAAAAAA GCACG TTGCCCC CGTGC TTTTTTTGTGTCAAG TERM 827 763831 - 763847 + T 100 -5.1 -5.71712 | opp_overlap 763831 CATATATTGAAAAAA GCACG TTGCCCC CGTGC TTTTTTTGTGTCAAG TERM 828 763964 - 764003 + T 76 -4.2 -5.06816 | gap 1, overlap 763968 CATTTCATGAGAAAC TGTACCCCGTTT-GCCCCC CAT GGTGGTTGAACGGGGTTAA TTTTTATTGCGAGAT TERM 829 763968 - 763999 + T 81 -9.4 -3.9407 | gap 1, overlap 763964 TCATGAGAAACTGTA CCCCGTTT-GCCCCC CAT GGTGGTTGAACGGGG TTAATTTTTATTGCG Cphamn1_0719 764135 - 764007 - | hypothetical protein Cphamn1_0720 764197 - 764466 + | transcriptional regulator, CopG family Cphamn1_0721 764447 - 764731 + | addiction module toxin, RelE/StbE family Cphamn1_0722 766246 - 764750 - | transposase, IS5 family, putative TERM 830 764879 - 764859 - G 100 -8.2 -5.30686 | AACAGGCACAAAAAA GGAGCGGC GAGCA GCCGGTCC AGGTTCATCACGAGG TERM 831 766425 - 766435 + r 73 -2.6 -5.10461 | overlap 766431 ATTGTTATTAATCGT TTTT GAC AAAA TTTTTGTTACGTGAC Cphamn1_0723 766840 - 766493 - | transcriptional regulator, XRE family Cphamn1_0724 767160 - 766837 - | protein of unknown function DUF891 TERM 832 767440 - 767450 + H 73 -2.6 -5.06414 | ATTGTTATTCATCGT TTTT GAT AAAA TTTTTGTTACGCGAC TERM 833 768233 - 768222 - H 95 -3.6 -5.63374 | CCAACAGTAAAAAAA CGCC CACG GGCA GATCATGATGGAGAA TERM 834 768362 - 768378 + H 85 -10.9 -3.83102 | overlap 768377 ACCCTGAAGCATTTC TGCACAC GAT GTGTGCA TTTGCTAATGATTTC TERM 835 769196 - 769208 + H 70 -9.1 -3.26471 | AAGCGGTCGTCAATG CGGTG TAC CACCG TTCCTATGAAGATCG Cphamn1_0727 769930 - 770142 + | hypothetical protein TERM 836 770238 - 770206 - T 77 -4.4 -5.15634 | TATGCGACGAAAAAA TTATTTTATTACCT ATAAA AGTCAATAAAATAA TAAGATATGATGTCC TERM 837 770316 - 770344 + T 76 -10.4 -3.315 | opp_overlap 770322, overlap 770322 CCCACATACAGAGAT TGAAAAGCACGG TTATT CCGTGCTTTTTG CTTTTCTATGAAGAT TERM 838 770338 - 770322 - T 84 -9.4 -4.27259 | opp_overlap 770316 770322 TACAGAGATTGAAAA GCACGG TTATT CCGTGC TTTTTGCTTTTCTAT TERM 839 770322 - 770338 + T 93 -9.4 -5.15526 | opp_overlap 770322, overlap 770316 TACAGAGATTGAAAA GCACGG TTATT CCGTGC TTTTTGCTTTTCTAT Cphamn1_0728 770857 - 770459 - | PilT protein domain protein Cphamn1_0729 771087 - 770854 - | SpoVT/AbrB domain protein TERM 840 771340 - 771372 + H 88 -12.2 -3.56836 | opp_overlap 771342 771348, overlap 771342 771348 TACACAAATACGAGA TATAAAAAGCACGG TATCC CCGTGCTTTTTGTG TTTACCAGATCATTT TERM 841 771370 - 771342 - H 73 -10.4 -3.04691 | opp_overlap 771340 771342 771348, overlap 771348 CACAAATACGAGATA TAAAAAGCACGG TATCC CCGTGCTTTTTG TGTTTACCAGATCAT TERM 842 771342 - 771370 + H 90 -12.6 -3.35775 | opp_overlap 771342 771348, overlap 771340 771348 CACAAATACGAGATA TAAAAAGCACGG TATCC CCGTGCTTTTTG TGTTTACCAGATCAT TERM 843 771364 - 771348 - H 93 -9.4 -5.05601 | opp_overlap 771342 771340 771348, overlap 771342 TACGAGATATAAAAA GCACGG TATCC CCGTGC TTTTTGTGTTTACCA TERM 844 771348 - 771364 + H 100 -9.4 -5.19879 | opp_overlap 771348 771342, overlap 771342 771340 TACGAGATATAAAAA GCACGG TATCC CCGTGC TTTTTGTGTTTACCA TERM 845 772154 - 772166 + G 82 -4.1 -5.28778 | GCCATGGGACAAGGT GATCA TGC TGGTC TTTTTTATCGCTGGT Cphamn1_0730 771897 - 772607 + | Isoprenylcysteine carboxyl methyltransferase Cphamn1_0731 772765 - 773046 + | hypothetical protein Cphamn1_0732 773275 - 773487 + | hypothetical protein Cphamn1_0733 773484 - 773807 + | transcriptional modulator of MazE/toxin, MazF Cphamn1_0734 775058 - 773844 - | hypothetical protein TERM 846 773897 - 773908 + g 78 -2.2 -5.27779 | GCGCATCGAGCAGTG TCGT GAAA GCGA TTTTTTCCTGTTCGA Cphamn1_0735 778423 - 775055 - | hypothetical protein TERM 847 777129 - 777147 + g 72 -8 -3.92178 | overlap 777145 TACTCCTGTTGCATA CTGGCGAC AGA GACGCCGG TTTCGTTGAGGTCGT Cphamn1_0736 779051 - 778416 - | hypothetical protein Cphamn1_0737 780496 - 779048 - | hypothetical protein Cphamn1_0738 781248 - 780580 - | putative lipoprotein TERM 848 781101 - 781134 + g 70 -8.9 -3.54022 | overlap 781099 GATATGGCGGGATGA TTGTTTCTGACCGTG TCTT TACGGTCAGCATCAA TGTTTCTCCGGGTTT TERM 849 781736 - 781720 - H 71 -9.5 -3.06671 | opp_overlap 781720 781719 ATACTGAGGTCAACA GGATTGA GGG TCAATCC GTTGTACTCCTCAAA TERM 850 782874 - 782901 + H 71 -7.7 -3.78934 | overlap 782873 782875 CGGTATTTGATTTTC ACGTTCCGGGT ATTCAC ACTCGGAACGA TTCTTATGGGCCAAG TERM 851 782875 - 782900 + H 78 -11.2 -2.87146 | overlap 782873 782874 GGTATTTGATTTTCA CGTTCCGGGT ATTCAC ACTCGGAACG ATTCTTATGGGCCAA Cphamn1_0740 783429 - 783611 + | hypothetical protein Cphamn1_0741 783820 - 784113 + | protein of unknown function DUF1568 Cphamn1_0742 784311 - 784769 + | transcriptional regulator, XRE family TERM 852 785028 - 785013 - g 76 -7.6 -4.32049 | GAGAATTCAGGAAAA CCGATA CCAA TATCGG GGTAGACAAATGGCA Cphamn1_0743 784760 - 785356 + | mobile mystery protein B TERM 853 785406 - 785445 + F 71 -2.3 -5.06414 | gap 2, overlap 785397 785406 785407 785409 AAGAGCCGTTGCAGA G-CGTT-TATGTGAGGCGC AGAA GCGTCTCAAATACAATGAC TTTTTGTTCGAGACC TERM 854 786177 - 786196 + G 76 -5 -4.75776 | overlap 786164 786180 CTTACCTGAATCGGG TATGGTCT CGTC AGACCTTA TTTTTCCGTTCGGTT TERM 855 786180 - 786193 + G 76 -6.7 -4.47888 | overlap 786177 ACCTGAATCGGGTAT GGTCT CGTC AGACC TTATTTTTCCGTTCG TERM 856 788124 - 788082 - g 71 -5.6 -4.57569 | opp_overlap 788090, overlap 788058 788085 TCATCTGCTGAAAAA GCAGACACGGATTTCAAAAT ATG ATTCTGAGAACCTTGTCTTC AGCGAAATAGAGGCG Cphamn1_0744 785683 - 788481 + | conserved hypothetical protein, putative DNA helicase TERM 857 788554 - 788592 + T 71 -10.3 -2.71745 | gap 2, overlap 788553 CGTCGCTTGACGTTC AGCAT-CAGCGG-CGGCGC GCA GCACCGTCCGCTGCATGCA ATTAATTGTTAGCCC Cphamn1_0745 791159 - 788601 - | hypothetical protein TERM 858 790622 - 790635 + g 73 -3.1 -5.02074 | gap 1 TTACCACCAGCACAC GCGTGG CTC CCA-GC TTTTTTGCCAACTGA Cphamn1_0746 792204 - 791152 - | hypothetical protein TERM 859 792171 - 792151 - G 73 -5.4 -4.70879 | GGCAAAGGTCAAAAA CTCCGC TGTGCTGTT GCGGAG GCGCACGCTGTTTGG Cphamn1_0747 793844 - 792252 - | Site-specific DNA-methyltransferase (adenine-specific) TERM 860 793279 - 793266 - G 72 -8.1 -3.90922 | opp_overlap 793264 793266 ATCTTCTCCAAATAA CTCGG CAAC CCGAG TCTTTATATCGTCAG Cphamn1_0748 794485 - 793841 - | type III restriction system methylase TERM 861 793959 - 793945 - G 76 -2.7 -5.07567 | CGAGATTTGAAAAAA GCGAG TCCTC CGCGC TGAAGGATGACGAAA TERM 862 794573 - 794541 - R 83 -12.1 -3.27298 | gap 2, opp_overlap 794528 794566 CTGGCTAACGACCAA GCT-CACCGG-CGGC GTCTT GCCGTCCGGTGCAGC GCCTTGTTAGCCCTT Cphamn1_0749 797631 - 794653 - | type III restriction protein res subunit TERM 863 795805 - 795820 + g 73 -3.2 -5.00616 | opp_overlap 795813 AGCCACCAGCGCCTT GAACGG AATG CCCTTC TTTTTTAGACAGGCA Cphamn1_0750 798944 - 797634 - | putative type I restriction-modification system Cphamn1_0751 801001 - 798941 - | N-6 DNA methylase TERM 864 799840 - 799859 + g 74 -7.2 -4.21194 | gap 1 GCTGAGGCATAGCGA CGA-TGGCT TCC AGCCAGTCG TTTTCCATAATCCAG TERM 865 801425 - 801467 + H 73 -4.9 -4.64334 | opp_overlap 801426 801431, overlap 801431 GCTATTTCATAAGAA ACTATACCCCATTCATCC-CC CAT GGTGGTTGAACGGGGT-TAGG TTTTATTGCGAGATT TERM 866 801466 - 801426 - H 90 -10.6 -4.32177 | opp_overlap 801425 801431, overlap 801431 CTATTTCATAAGAAA CTATACCCCATTCATCC-CC CAT GGTGGTTGAACGGGGT-TAG GTTTTATTGCGAGAT TERM 867 801462 - 801431 - H 79 -11.6 -3.12948 | gap 1, opp_overlap 801425 801431, overlap 801426 TCATAAGAAACTATA CCCCATTCATCC-CC CAT GGTGGTTGAACGGGG TTAGGTTTTATTGCG TERM 868 801431 - 801462 + H 75 -9.4 -3.45634 | gap 1, opp_overlap 801431 801426, overlap 801425 TCATAAGAAACTATA CCCCATTCATCC-CC CAT GGTGGTTGAACGGGG TTAGGTTTTATTGCG Cphamn1_0752 801747 - 802358 + | hypothetical protein TERM 869 803048 - 803077 + T 72 -9.4 -3.19117 | opp_overlap 803054, overlap 803054 TGTTGCGCGGCTGAT AAAAAAGCACGG TATCCC CCGTGCTTTTTG TGTTCCTGATGTAAT TERM 870 803054 - 803071 + T 91 -8.4 -5.1244 | opp_overlap 803054, overlap 803048 GCGGCTGATAAAAAA GCACGG TATCCC CCGTGC TTTTTGTGTTCCTGA TERM 871 803071 - 803054 - T 95 -8.4 -5.24129 | opp_overlap 803054 803048 GCGGCTGATAAAAAA GCACGG TATCCC CCGTGC TTTTTGTGTTCCTGA Cphamn1_0754 804435 - 803092 - | hypothetical protein Cphamn1_0755 805263 - 804469 - | Methyltransferase type 12 TERM 872 804517 - 804529 + g 70 -3.3 -4.83269 | GAAAACATATATCGC TCCCG ATT CGGTA TTTTTCCTGTACTCT TERM 873 805766 - 805742 - g 71 -6.9 -4.22948 | opp_overlap 805750 805752 805763 AAAAGGTACTGAAAA GGCTGCCGTCG CTG CGGTGGCTGCC GCGGCTCTTCTTGGA Cphamn1_0756 805638 - 806216 + | hypothetical protein TERM 874 806252 - 806226 - f 86 -7.3 -5.09173 | gap 1, opp_overlap 806226 CAATAGTTCAAAAAA GCCAACC-CTCA GAAA TGGGAGGTTGGC TTTTTTTTTCGGAAA TERM 875 806226 - 806252 + F 100 -9.5 -6.06723 | gap 1, opp_overlap 806226 CAATAGTTCAAAAAA GCCAACC-CTCA GAAA TGGGAGGTTGGC TTTTTTTTTCGGAAA Cphamn1_0757 806293 - 806919 + | hypothetical protein Cphamn1_0758 807159 - 808004 + | hypothetical protein TERM 876 808713 - 808696 - g 70 -11.3 -2.67803 | opp_overlap 808711, overlap 808693 TTTTCAGGAAATTTA CCGGGTT CTGA AACCCGG CGGGAAAATAGCCGT Cphamn1_0759 808202 - 809005 + | Methyltransferase type 11 Cphamn1_0760 809012 - 810484 + | putative anti-sigma regulatory factor, serine/threonine protein kinase Cphamn1_0761 810587 - 811222 + | hypothetical protein Cphamn1_0762 811308 - 811619 + | hypothetical protein Cphamn1_0763 811774 - 812724 + | short-chain dehydrogenase/reductase SDR TERM 877 813100 - 813114 + G 78 -3.5 -5.1925 | AAGAGCTGGTCCGGG CCTTC GGAGA GGAGG TTTTTTCGATTATCG Cphamn1_0764 812760 - 814946 + | helicase, RecD/TraA family Cphamn1_0765 815203 - 817590 + | ribonuclease R TERM 878 817633 - 817652 + T 89 -12.2 -3.63627 | opp_overlap 817646 ATGGTTTATTTGTAG GGGCGAAA AATA TTTCGCCC TTTCGAATGTCAGGC Cphamn1_0766 818957 - 817794 - | sodium/hydrogen exchanger TERM 879 818505 - 818486 - G 70 -2.1 -4.93316 | overlap 818479 818488 CAAGAACAGCAAAAA TATCCTG CATGAT CAGGATC GCTATAGCCACAGCA Cphamn1_0767 820333 - 818978 - | deoxyribodipyrimidine photolyase TERM 880 819943 - 819953 + g 76 -5.4 -4.77986 | GGATCGGGATATGTT CAAG AAC CTTG TTTTTCCATGTTTCG TERM 881 820180 - 820196 + g 71 -5.9 -4.30014 | CAAGGTTGAATGCGA CAATCAG CGG TTGATTG TTTTGCATTGATAAC Cphamn1_0768 821060 - 820347 - | glutamine amidotransferase class-I TERM 882 821538 - 821525 - R 71 -2.4 -5.03145 | TAATCCTCGAAAAAA GAAC GTATAT GTTC CCTTGTCAGGGGTAG TERM 883 822920 - 822942 + r 74 -6.9 -4.30559 | overlap 822905 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_0770 824489 - 823092 - | hypothetical protein TERM 884 823158 - 823172 + g 70 -8.6 -3.73072 | opp_overlap 823158 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_0771 825243 - 825806 + | hypothetical protein Cphamn1_0772 826661 - 825822 - | Integrase catalytic region TERM 885 826501 - 826511 + g 71 -6.8 -4.18934 | CACATGCGATACACG CCGT AGT ACGG TTTCTTCAGGTACTG Cphamn1_0773 826975 - 826685 - | transposase IS3/IS911 family protein Cphamn1_0774 826977 - 827744 + | hypothetical protein Cphamn1_0775 828136 - 827762 - | Rhodanese domain protein TERM 886 827963 - 827979 + g 76 -8 -4.21438 | AATTACCTTTCGTTT TGCAGG TATTT CCTGCA TTCTTTGTTCAAATC TERM 887 828511 - 828495 - R 82 -5.1 -5.28983 | opp_overlap 828490 828495 CCTAAAATAGAAAAA GCCTC TGAAAAT GAGGC TTTTATTATGAGCGG TERM 888 828495 - 828511 + r 75 -5.1 -4.77165 | opp_overlap 828495, overlap 828490 CCTAAAATAGAAAAA GCCTC TGAAAAT GAGGC TTTTATTATGAGCGG Cphamn1_0776 830075 - 828873 - | tryptophan synthase, beta subunit TERM 889 830301 - 830312 + G 76 -7.2 -4.31692 | TCACAAAGAGGATTG CCGG CATA CCGG TTTTGCTGATAGCTT Cphamn1_0777 830267 - 832990 + | hypothetical protein Cphamn1_0778 833917 - 833045 - | alpha/beta hydrolase fold TERM 890 833460 - 833440 - G 74 -11.9 -2.84504 | overlap 833437 833435 ACGCCGCAAACATGA CTTCACCGA TAA CCGGTGAAG CAATCAGGCCGAAAA Cphamn1_0779 834063 - 834461 + | transcriptional regulator, BadM/Rrf2 family TERM 891 835480 - 835492 + G 70 -3.3 -4.83759 | overlap 835481 835488 GTTGAATATCAGGAT CCTGC ACC GCAGC TTTTTGCCTTTAATT Cphamn1_0780 834631 - 837477 + | excinuclease ABC, A subunit Cphamn1_0781 837889 - 837593 - | hypothetical protein TERM 892 838238 - 838223 - g 84 -4.7 -5.27938 | opp_overlap 838223 ACCGGTAAAGAAAAA CCTCA GTATGG TGAGG TCGTTGCTGTAGGAG Cphamn1_0782 838121 - 838408 + | chaperonin Cpn10 TERM 893 839193 - 839177 - g 76 -7.2 -4.37886 | overlap 839152 CGATTCTCGAGAAAA CCGCCC AGTCA GGACGG CCTTTGATGATCATC TERM 894 840021 - 839979 - g 71 -7.7 -4.09243 | gap 1, overlap 839980 GACAGCTCTTGAAAA CGCCGCTTCGGTCG-CAGGA ATTC TCCTGACCACTGAAGCAGCT ATCACCGACATCAAG TERM 895 840020 - 839980 - g 74 -11.2 -3.05224 | gap 1, overlap 839979 ACAGCTCTTGAAAAC GCCGCTTCGGTCG-CAGGA ATTC TCCTGACCACTGAAGCAGC TATCACCGACATCAA Cphamn1_0783 838459 - 840111 + | chaperonin GroEL TERM 896 840140 - 840165 + F 100 -14 -6.15828 | CTGTAGTTACTTTAC GCTGTCCCGG CATACA CCGGGGCAGC TTTTTTTTTGATAAA Cphamn1_0784 840276 - 840956 + | exsB protein Cphamn1_0785 841034 - 841723 + | Abortive infection protein Cphamn1_0786 841742 - 842548 + | tryptophan synthase, alpha subunit TERM 897 843072 - 843058 - g 74 -10 -3.52787 | CACTGAACAGGATAA CGGTCA GTA TGACCG GGCGGGTGATATTTT TERM 898 843283 - 843254 - g 70 -9.9 -3.21099 | opp_overlap 843252, overlap 843255 GTGGTCTATCACGAA GGCGGAGCCTCTC TTGC GGAAGGCTCCGCT GAAAAAATATATCTG TERM 899 843282 - 843255 - g 77 -13.4 -2.52516 | opp_overlap 843252, overlap 843254 TGGTCTATCACGAAG GCGGAGCCTCTC TTGC GGAAGGCTCCGC TGAAAAAATATATCT Cphamn1_0787 842558 - 843619 + | glycosyl transferase family 2 TERM 900 843793 - 843810 + T 76 -4.1 -5.0538 | CCCGCTGCTGCTGCA CGCTG TCGATTCT CAGCG TTTTTTCAGGTGCCC Cphamn1_0788 844851 - 843805 - | NAD-dependent epimerase/dehydratase Cphamn1_0789 845467 - 844907 - | cyclase/dehydrase Cphamn1_0790 846110 - 845460 - | cyclase/dehydrase TERM 901 845591 - 845581 - G 86 -6.8 -4.92757 | GCATCAACAATAAAA TCCG GCG CGGA AAAGTCGGGGTTTAC Cphamn1_0791 846648 - 846121 - | cyclase/dehydrase Cphamn1_0792 848238 - 846790 - | alpha amylase catalytic region TERM 902 848060 - 848075 + g 71 -6.1 -4.41348 | TGCGAGCGGGCGATC GCCTG ACTGTA CAGGC TTTCTTTCCAGACGC Cphamn1_0793 848427 - 848723 + | transcriptional coactivator/pterin dehydratase TERM 903 849079 - 849101 + F 100 -4.9 -6.55664 | gap 1, opp_overlap 849079 GGATAAAAAACATGA GGCCGT-TTC ACAG GAAGACGGTC TTTTTTTTTATTTTA TERM 904 849546 - 849535 - g 71 -5.8 -4.371 | overlap 849536 CCGATGACAGCAAAA GCCT GATC AGGC AGGTGATGAAGGAGT Cphamn1_0794 849177 - 851384 + | UvrD/REP helicase TERM 905 852143 - 852162 + G 74 -10 -3.53012 | AGGAGTTAGAGGATG TGGCGGCA CTGC TGCTGCCA TTTGACGGAAAGGAG TERM 906 852376 - 852339 - g 73 -2.7 -5.02074 | gap 1, overlap 852340 TCACCTTGGAAAAAA GCTGTT-ACTCAGACCGC TTG ACGGTCAGATTGAACAGG AATCGAACGCGATGG Cphamn1_0795 851554 - 852591 + | hypothetical protein Cphamn1_0796 852619 - 853212 + | leucyl/phenylalanyl-tRNA/protein transferase TERM 907 853269 - 853279 + F 74 -2.4 -5.22039 | GTTTTTTCGGGGTGA CCTG CCG CCGG TTTTTTAGATTTAAA TERM 908 853547 - 853531 - g 80 -2.2 -5.52909 | overlap 853511 GAAGATCGAAAAAAA CCTCTA CGGCC TTGAGG TTGACACGATCCATG Cphamn1_0797 853310 - 854611 + | arsenite-activated ATPase ArsA Cphamn1_0798 854735 - 855616 + | enoyl-(acyl-carrier protein) reductase (NADH) TERM 909 855645 - 855689 + F 76 -5.7 -4.85599 | overlap 855646 855648 AGCACTTCACAGCCG GTATTTATTCTGCCGATGAGC ACC GCTCTTCGGCAAAGGAAATGA TTTTTATAGACTCAC TERM 910 855646 - 855688 + F 73 -9.2 -3.50877 | overlap 855645 855648 GCACTTCACAGCCGG TATTTATTCTGCCGATGAGC ACC GCTCTTCGGCAAAGGAAATG ATTTTTATAGACTCA TERM 911 855648 - 855686 + F 74 -9.6 -3.32317 | overlap 855646 855645 ACTTCACAGCCGGTA TTTATTCTGCCGATGAGC ACC GCTCTTCGGCAAAGGAAA TGATTTTTATAGACT TERM 912 856479 - 856462 - g 74 -4.7 -4.8622 | overlap 856463 856464 GTTCTCAAGGAAAAA GTCGCCC TTCA GGACGGC GAGGTTGTCGATACA TERM 913 856487 - 856523 + G 83 -3.2 -5.42259 | gap 2, opp_overlap 856495, overlap 856491 856492 AGGACGGCGAGGTTG TCGATACATCTTCCATGA ATG TCA-GGAAGATGCGT-GA TTTTTTTGCCGATCA TERM 914 856569 - 856557 - g 70 -4.8 -4.66953 | opp_overlap 856557 856559 TGAAGATGCGAAAAA CAGC GGTCT GCTG CTTTCGCTCCACCTG Cphamn1_0799 855829 - 858048 + | isocitrate dehydrogenase, NADP-dependent TERM 915 858075 - 858098 + F 100 -19.6 -5.60993 | opp_overlap 858075 GAAGTTATTCCGAAA GCCCCCCTGC CGAC GCAGGGGGGC TTTTTTTATGAAAAA TERM 916 858098 - 858075 - f 100 -19.6 -3.58269 | opp_overlap 858075 GAAGTTATTCCGAAA GCCCCCCTGC CGAC GCAGGGGGGC TTTTTTTATGAAAAA TERM 917 858852 - 858867 + G 71 -6.8 -4.2123 | opp_overlap 858848 CGCTTATTCAAGGCC GCAGGC GCAC GCTTGC TTTATTCAGTCGGTA TERM 918 860286 - 860253 - g 74 -8 -4.04206 | opp_overlap 860267 GCACGGCTACAGAAA CGCGCAGGTCAGTG TGATCG CGCCGACCGGCACG ATCGGCCTGGTGATG Cphamn1_0800 858319 - 861804 + | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent TERM 919 861810 - 861867 + F 100 -17.1 -2.54636 | gap 1, opp_overlap 861848, overlap 861810 861858 CTGCTCGTAAAACCG TTTTCTGCCTGC-TGCGCGGTTCGAGTG CGG CACACGAACCGCTCACGACGGCAGAAAG CTGGTTTGTTTTCCG TERM 920 861810 - 861868 + F 78 -11.1 -3.25598 | gap 2, opp_overlap 861848, overlap 861810 861858 CTGCTCGTAAAACCG -TTTTCTGCCTGC-TGCGCGGTTCGAGTG CGG CACACGAACCGCTCACGACGGCAGAAAGC TGGTTTGTTTTCCGG TERM 921 861955 - 861920 - f 100 -16.3 -3.09288 | opp_overlap 861926, overlap 861926 GACTTTTGAACAAAG TGAAAAGCCCTGCAC ACCGGA GTGCAGGGCTTTTCT GTCGCTTCAGGAGAA TERM 922 861949 - 861926 - f 100 -13.9 -4.42851 | opp_overlap 861926, overlap 861920 TGAACAAAGTGAAAA GCCCTGCAC ACCGGA GTGCAGGGC TTTTCTGTCGCTTCA TERM 923 861926 - 861949 + F 100 -13.9 -4.57474 | opp_overlap 861926 861920 TGAACAAAGTGAAAA GCCCTGCAC ACCGGA GTGCAGGGC TTTTCTGTCGCTTCA Cphamn1_0801 862260 - 863096 + | hypothetical protein TERM 924 864044 - 864030 - gf 73 -2.8 -5.00616 | overlap 864036 CCTGCTGCTAAAAAA GAATAG CGG CTACCC TTTAGCGGGCATGAG Cphamn1_0802 863638 - 865413 + | hypothetical protein TERM 925 865554 - 865575 + GF 76 -10.1 -3.36878 | opp_overlap 865559 GATCGCTTCTACACG GCAAACCGG TTTT CCGGTGTGC TTATGCATGAATACG Cphamn1_0803 865377 - 867419 + | hypothetical protein Cphamn1_0804 867420 - 868244 + | hypothetical protein TERM 926 868360 - 868348 - f 76 -6.2 -4.49981 | GACATCAGGAGAAAA CCCG ATTGA CGGG CAAAATATAAAGGGG Cphamn1_0805 868698 - 868967 + | hypothetical protein Cphamn1_0806 868985 - 869245 + | plasmid stabilization system Cphamn1_0807 870049 - 869339 - | ABC transporter-related protein TERM 927 869827 - 869840 + g 86 -5.2 -5.24129 | GTTTTCTGCGCAGGT GCGG AATATG CCGC TTTTTTATCGAGGAA Cphamn1_0808 871205 - 870189 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 928 870859 - 870905 + g 70 -8.6 -3.78736 | overlap 870871 870884 GGAGCGGTAACGAGG GCTCTGGTTTTTCCTTCCAGGC AGA GCCTGGAAGCTGTATCGAGAGC TTTCATGGCTGTGTC TERM 929 870871 - 870893 + g 76 -12 -2.8806 | overlap 870859 870884 AGGGCTCTGGTTTTT CCTTCCAGGC AGA GCCTGGAAGC TGTATCGAGAGCTTT Cphamn1_0809 871686 - 871219 - | hypothetical protein TERM 930 871297 - 871287 - G 74 -6.8 -4.42386 | overlap 871290 TTGCCAGCCAGAAAA GCAG CGG CTGC GGCAGGAGCACAAAA TERM 931 871486 - 871474 - G 74 -7.7 -4.12532 | GTTTTTATACAGAAA GATCG CGG CGATC GAAAGGATTCCGGAA Cphamn1_0810 872995 - 871724 - | Three-deoxy-D-manno-octulosonic-acid transferase domain protein TERM 932 872488 - 872464 - G 76 -2.8 -5.18561 | gap 1 CAAACAGCGAAAAAA CCTG-CCGGTA GAAC TGCCGGACAAG CGGTTTTCCATATAT TERM 933 872540 - 872552 + g 76 -4.7 -5.00616 | opp_overlap 872540 CGCTACAAGAAAAAG GCGCG CTC CGCTC TTTTTTGCGGCAAGG TERM 934 873564 - 873544 - H 77 -11.2 -2.6952 | overlap 873540 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGTGGAGA TERM 935 873655 - 873635 - H 77 -11.2 -2.6952 | overlap 873631 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGTGGAGA TERM 936 873678 - 873696 + H 70 -10.3 -2.6027 | opp_overlap 873674, overlap 873675 AGTGGAGAGGAGTCA TGCCGGA CGTGA TCCGGCA TCCATTGGGTTTTAC TERM 937 873930 - 873910 - H 77 -11.2 -2.6952 | overlap 873906 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGTGGAGA TERM 938 874021 - 874001 - H 77 -11.2 -2.6952 | overlap 873997 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGTGGAGA TERM 939 874044 - 874062 + H 70 -10.3 -2.6027 | opp_overlap 874040, overlap 874041 AGTGGAGAGGAGTCA TGCCGGA CGTGA TCCGGCA TCCATTGGGTTTTAC TERM 940 874136 - 874154 + H 70 -10.3 -2.6027 | opp_overlap 874132, overlap 874133 AGTGGAGAGGAGTCA TGCCGGA CGTGA TCCGGCA TCCATTGGGTTTTAC TERM 941 874296 - 874276 - H 77 -11.2 -2.6952 | overlap 874272 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGTGGAGA Cphamn1_0811 874611 - 875108 + | hypothetical protein TERM 942 875692 - 875710 + G 71 -7.4 -4.07877 | opp_overlap 875690 875692 GGAACCGGCAAAACA GCGGCA TTCGCGC TGCCGC TTCTTTCTACAATCG TERM 943 876070 - 876050 - g 73 -3.2 -5.02074 | gap 1, opp_overlap 876054, overlap 876052 GGATTCTTGAAAAAA CG-CCTGCC ACCC GTCAGGTCG CGCTCTTTTCCGCAA TERM 944 876144 - 876121 - g 71 -5.2 -4.51097 | overlap 876123 876124 CGAATCACGAGAAAA TATCTCCGTG ACTT CACGGAGGTC GCCATCAAGTCAAAA TERM 945 876141 - 876124 - g 73 -11.3 -2.9043 | overlap 876123 876121 ATCACGAGAAAATAT CTCCGTG ACTT CACGGAG GTCGCCATCAAGTCA Cphamn1_0812 875503 - 877278 + | DEAD/DEAH box helicase domain protein Cphamn1_0813 877387 - 878091 + | hypothetical protein Cphamn1_0814 878118 - 878579 + | hypothetical protein TERM 946 879842 - 879832 - g 84 -2.4 -5.55855 | GGCAAAAAAAGAAAA CGAC TCG GACG CGGATAACTTCTTTT Cphamn1_0815 878855 - 880270 + | Endonuclease/exonuclease/phosphatase Cphamn1_0816 880304 - 881692 + | beta-lactamase domain protein Cphamn1_0817 882631 - 881714 - | tyrosine recombinase XerD Cphamn1_0818 883991 - 882648 - | sun protein TERM 947 883911 - 883931 + g 83 -5.3 -5.20154 | opp_overlap 883911, overlap 883914 883916 GTGCCTGTTGAGAAG TCTGTGCAG GGA CTGCTCTGA TTTTTTCGCTTGTGT Cphamn1_0819 884203 - 885606 + | O-acetylhomoserine/O-acetylserine sulfhydrylase Cphamn1_0820 885691 - 886764 + | homoserine O-acetyltransferase TERM 948 886756 - 886771 + F 70 -6 -4.21787 | opp_overlap 886739 886749 886736 GCCAAGGACAGCTCG GCCGCC TGAA GGCGCC TTTTCAAGCTTTTTT TERM 949 887343 - 887313 - g 71 -6.9 -4.17425 | opp_overlap 887341, overlap 887305 887314 887317 AGAATTACTTGAAAA TTCAGTTGTCAAG GAAAA CTTGACAACTGCT GCCGACGGTAAAAGC TERM 950 887342 - 887314 - g 71 -10.4 -3.09732 | opp_overlap 887341, overlap 887305 887313 887317 GAATTACTTGAAAAT TCAGTTGTCAAG GAAAA CTTGACAACTGC TGCCGACGGTAAAAG Cphamn1_0821 887110 - 887604 + | DNA-binding protein Cphamn1_0822 887601 - 887759 + | type III restriction-modification system restriction subunit Cphamn1_0823 888345 - 887860 - | hypothetical protein TERM 951 888286 - 888273 - G 70 -8.1 -3.66574 | TAAAAAACATCAGAA TGCCG GTAA CGGCA AGAATGATGAAAGTT Cphamn1_0824 889467 - 888487 - | sulfotransferase TERM 952 889608 - 889595 - R 76 -5.9 -4.74103 | opp_overlap 889595 889606 889607 GCGTGAATGGAAAAA GACGC TCAT GCGCC TTGTTATGACAAGGG TERM 953 889606 - 889623 + r 74 -4.1 -4.9448 | opp_overlap 889595, overlap 889595 889607 AAAAGACGCTCATGC GCCTTGT TATG ACAAGGG TTTTCTTTAATCGAT Cphamn1_0825 890913 - 889630 - | seryl-tRNA synthetase Cphamn1_0826 891389 - 890934 - | hypothetical protein Cphamn1_0827 891541 - 891392 - | hypothetical protein Cphamn1_0828 892353 - 891622 - | short-chain dehydrogenase/reductase SDR Cphamn1_0829 892653 - 893711 + | transposase IS4 family protein Cphamn1_0830 893872 - 894162 + | cold-shock DNA-binding domain protein Cphamn1_0831 894914 - 894243 - | DNA repair protein RadC TERM 954 894536 - 894555 + g 70 -9.3 -3.56704 | overlap 894533 894542 TTTTTGTGTTCAGAT GGAGCAC AAAGAG GTGCTCC TTGCTTTCGTCAGGC TERM 955 895224 - 895245 + r 100 -10.8 -6.02345 | opp_overlap 895224 CTGTTCACACTAAAA GCGTCCCG TATACT CGGGGCGC TTTTTTTTATGGTTC TERM 956 895245 - 895224 - R 84 -8.6 -4.34402 | opp_overlap 895224 CTGTTCACACTAAAA GCGTCCCG TATACT CGGGGCGC TTTTTTTTATGGTTC Cphamn1_0832 896206 - 895274 - | malate dehydrogenase, NAD-dependent TERM 957 896297 - 896316 + r 72 -8.5 -3.59262 | opp_overlap 896297 TGAAGCAAAAAAAAA GCCGGCC TTTTAC GGTCGGC TTTGAAAATATACAG TERM 958 896316 - 896297 - R 100 -6.3 -6.23209 | opp_overlap 896297 TGAAGCAAAAAAAAA GCCGGCC TTTTAC GGTCGGC TTTGAAAATATACAG Cphamn1_0833 896610 - 896356 - | ribosomal protein L27 Cphamn1_0834 896940 - 896650 - | ribosomal protein L21 TERM 959 896683 - 896695 + g 70 -3.3 -4.80453 | AACCTGTGTCATGAG CTGAC GGT GTCCG TTTCTTTTCTGATAG Cphamn1_0835 897573 - 897097 - | hypothetical protein TERM 960 897320 - 897304 - G 74 -3.6 -5.02074 | CCAGCCGTGAAAAAA GACAGC AAGAA GCAGTC CGGAGACAAGTACCG TERM 961 897820 - 897802 - H 74 -11 -2.6252 | overlap 897798 897799 CCACACTATAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGGGGTTTTAC TERM 962 897870 - 897850 - H 77 -11.2 -2.6952 | overlap 897846 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGAGAGTGGAG TERM 963 898093 - 898081 - g 82 -7.7 -4.614 | opp_overlap 898081 898080 GGGAATGACAGAAAA GGGAA AGT TTCCC GTTCTTATACGCACT Cphamn1_0836 897991 - 898170 + | hypothetical protein TERM 964 898207 - 898194 - g 86 -3.1 -5.55769 | gap 1 CCGGAGAAGAAAAAA GGCAGT GAC AC-GCC GATGATGCGCCAGTA TERM 965 898614 - 898596 - g 80 -4.4 -5.14563 | opp_overlap 898600 898600 898605, overlap 898597 TGCTTTATGAAAAAA GGGCGCGA ACG TCGTGCCG GCGTTGCCTTTATCG TERM 966 900044 - 900033 - g 90 -5.8 -5.24129 | overlap 900014 TTTTTTGACAAAAAA CAGC GAAT GCTG ATGGTCACCGGTCCG Cphamn1_0837 898167 - 900803 + | DNA mismatch repair protein MutS TERM 967 901684 - 901724 + G 73 -5.3 -4.59773 | opp_overlap 901707 TCCTGGGTCGGCCAG GCGACGACCAAACTCGG AGAGAAC CCGCGTTTGCTGGACGC TTTTTCCCGCTCCGG Cphamn1_0838 900886 - 902304 + | Radical SAM domain protein Cphamn1_0839 904178 - 902421 - | ABC transporter-related protein Cphamn1_0840 904316 - 904717 + | transcriptional regulator, MerR family TERM 968 904764 - 904791 + T 70 -9.9 -2.95538 | opp_overlap 904769, overlap 904762 904769 TACCGGGCAGTAATA AAAAAGCCGGC GATTTA GCCGGCTTTTA CTGTTTTGTTCCGAG TERM 969 904786 - 904769 - T 100 -9.8 -5.5112 | opp_overlap 904764 904762 904769 GGCAGTAATAAAAAA GCCGGC GATTTA GCCGGC TTTTACTGTTTTGTT TERM 970 904769 - 904786 + T 91 -9.8 -4.59591 | opp_overlap 904769, overlap 904764 904762 GGCAGTAATAAAAAA GCCGGC GATTTA GCCGGC TTTTACTGTTTTGTT Cphamn1_0841 905915 - 904812 - | bacteriochlorophyll A protein TERM 971 906028 - 906018 - H 79 -2.6 -5.38549 | opp_overlap 906025, overlap 906025 TTTAAATAATAAAAA TTAA TAA TTAA AGAAAATATGTCTCT Cphamn1_0842 906211 - 907824 + | apolipoprotein N-acyltransferase Cphamn1_0843 909017 - 907821 - | sigma54 specific transcriptional regulator, Fis family TERM 972 908531 - 908541 + g 95 -5.4 -5.60993 | opp_overlap 908526 GTCGATAATAGAGAT CTTC CCT GAAG TTTTTTTCTGCGACC TERM 973 908555 - 908568 + g 85 -3.7 -5.38054 | overlap 908549 AGTTTTTTTCTGCGA CCGCC TGTC GGAGG TTTTTGTTTGTCGCG TERM 974 908598 - 908627 + g 79 -7.1 -4.66833 | GGCGATAATCCGCGT GTCGGCGTATATG GTTT CAGATGAGCCGAC TTTTTGAAATTCCCC TERM 975 908757 - 908774 + g 72 -4 -4.8048 | opp_overlap 908739 TTTCCTGCTTTGAAT GGCGCC GGTAAA GGAGCC TTTTTCATGTCCGAA Cphamn1_0844 909622 - 909062 - | Sporulation domain protein TERM 976 909404 - 909394 - G 74 -8.2 -4.07568 | opp_overlap 909394 GCTGCTTGCGGAAAA GGCG TGC CGCC TCGGGACCGTCTTCG TERM 977 910503 - 910527 + G 73 -9.2 -3.67597 | opp_overlap 910501 910502, overlap 910504 TCTGTTTGAAGAACT TCGCGATGCG GAAAA CGCAGCGCGG TTCTTCCGTGAGCAC Cphamn1_0845 909724 - 910584 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 978 910648 - 910660 + T 85 -7.7 -4.614 | opp_overlap 910647 AGGGAGTGCAAGGAC GGGAA ACT TTCCC TTTTCTGTCATTCCC TERM 979 910825 - 910845 + T 77 -11.2 -2.6952 | overlap 910820 CTCCACTCCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGTCCTG Cphamn1_0846 912073 - 911210 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Cphamn1_0847 913390 - 912089 - | Xanthine/uracil/vitamin C permease TERM 980 913484 - 913472 - H 76 -7.7 -4.20806 | opp_overlap 913471 913467 GATGGGAAAATCAAA CAGGT CAA ACCTG AGTTGATCGTTTCAA TERM 981 914028 - 914016 - H 85 -7.7 -4.614 | opp_overlap 914015, overlap 914018 GGGAATGACAGAAAA GGGAA CGT TTCCC GTCCTTGTGCGCTTT TERM 982 914547 - 914560 + G 70 -2.3 -4.91109 | AGAAAAAGAAGGCGT GTCCT ACAG GGGGC TTTTTCTGATAGACA Cphamn1_0848 914179 - 914769 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 983 914830 - 914870 + T 100 -20 -4.28361 | gap 1, opp_overlap 914830 TGATGCGTGATGAAA GAGACGCCCCGTAAATACA GCAA TGTGTT-ACGGGGCGTCTC TTTTCATCAGCTTCC TERM 984 914870 - 914830 - T 100 -17.8 -3.73224 | gap 1, opp_overlap 914830 TGATGCGTGATGAAA GAGACGCCCCGTAAATACA GCAA TGTGTT-ACGGGGCGTCTC TTTTCATCAGCTTCC Cphamn1_0849 916432 - 914987 - | prolyl-tRNA synthetase TERM 985 916280 - 916290 + g 79 -5.4 -5.02074 | GAACATGCCATCCAG TGCA GCC TGCA TTTTTTCCCAGATGG Cphamn1_0850 917226 - 916486 - | hypothetical protein Cphamn1_0851 917445 - 918338 + | protein-(glutamine-N5) methyltransferase, release factor-specific TERM 986 919170 - 919192 + G 76 -6.3 -4.59773 | opp_overlap 919169 919172, overlap 919169 GGAGCTTTTGAACAT GATTGTCGG GTCGG CAGACAATC TTTTTGACGATACAC Cphamn1_0852 918511 - 919569 + | heat-inducible transcription repressor HrcA Cphamn1_0853 919623 - 920189 + | GrpE protein TERM 987 920315 - 920303 - g 82 -4.1 -5.23316 | GATGAGATTAAAAAA GCCTA CCG TAAGC TGGCCATGAAGTACC Cphamn1_0854 920237 - 921424 + | chaperone protein DnaJ TERM 988 921449 - 921473 + T 72 -10 -2.93623 | opp_overlap 921449, overlap 921446 921451 AGCATCAACAGAAAA GAGGCTGTCT CAAAA GGGCAGCCTC TCGTATTTTGAGCAG TERM 989 921473 - 921449 - T 82 -7.1 -4.71186 | opp_overlap 921446 921449 921451 AGCATCAACAGAAAA GAGGCTGTC TCAAAAG GGCAGCCTC TCGTATTTTGAGCAG TERM 990 921838 - 921858 + T 77 -11.2 -2.73177 | overlap 921835 921835 CTCCACTCTCGGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTATTATT Cphamn1_0855 922616 - 921996 - | Proto-chlorophyllide reductase 57 kD subunit Cphamn1_0856 922891 - 922739 - | hypothetical protein TERM 991 922866 - 922886 + g 70 -11.2 -2.69921 | overlap 922861 CTCCACTCCCTGTCA TTCCCGTG CCTGA CACGGGAA TCCATTCTTGTCCTT TERM 992 923042 - 923021 - R 100 -10.2 -5.72622 | opp_overlap 923021 TTCAGAAATAAAAAA GAGGGTGA TATTCT TCACCCTC TTGTAACGATCACGT TERM 993 923021 - 923042 + r 76 -10.2 -3.31263 | opp_overlap 923021 TTCAGAAATAAAAAA GAGGGTGA TATTCT TCACCCTC TTGTAACGATCACGT Cphamn1_0857 924077 - 923073 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 994 924130 - 924112 - R 86 -3.2 -5.47218 | TTGTATTCAAAAAAA TTCATG TTCAGTG CATGAA AATAAGATAACTATA Cphamn1_0858 925585 - 924155 - | Mur ligase middle domain protein TERM 995 925636 - 925672 + r 77 -4.3 -5.10461 | overlap 925666 TCGTCATGTGTTCAT TCCGGGTTGCTCAGAGG TTC CCTCTGAGCAGAAGAGA TTTTTCTTACATAGA Cphamn1_0859 926948 - 925632 - | major facilitator superfamily MFS_1 Cphamn1_0860 927731 - 927045 - | ABC transporter-related protein Cphamn1_0861 929194 - 927941 - | gamma-glutamyl phosphate reductase TERM 996 928891 - 928902 + g 70 -4.4 -4.63089 | TTTTCAATGCAAGTC CGTT CGGT AACG TTCTTTTTTCAAGTA Cphamn1_0862 929428 - 929222 - | hypothetical protein TERM 997 929405 - 929417 + g 100 -7.7 -5.55698 | TCTGTTGAGCAGCGT GAACG AAT CGTTC TTTTTTTGCATTATA Cphamn1_0863 929584 - 930915 + | outer membrane efflux protein TERM 998 931872 - 931886 + G 76 -5.6 -4.77157 | overlap 931865 GAGGGGGCATCTGTT GTGACC AAC GGACAC TTTTTAATCGATTCG Cphamn1_0864 930912 - 931949 + | efflux transporter, RND family, MFP subunit TERM 999 932326 - 932312 - g 74 -11.4 -3.07013 | TATCTCGCCAAGATA CGGGAG CAG CTCCCG GAAGGGGCCAACCCC Cphamn1_0865 931961 - 935230 + | heavy metal efflux pump, CzcA family TERM 1000 935410 - 935396 - f 71 -9.2 -3.41051 | opp_overlap 935395 TCACTCCGATCAGAA CCCGAC AAG GCCGGG AGTTTATGACTGGTG Cphamn1_0866 935901 - 936149 + | hypothetical protein Cphamn1_0867 936192 - 936755 + | hypothetical protein Cphamn1_0868 936830 - 937258 + | Cupin 2 conserved barrel domain protein TERM 1001 937324 - 937300 - f 100 -16.5 -4.14874 | opp_overlap 937300 ACAAGACCGTTAAAA GCCTGCAAGGA AAT CCCTTGCAGGC TTTTTTTATTCCTGA TERM 1002 937300 - 937324 + F 100 -15.8 -5.84381 | opp_overlap 937300 ACAAGACCGTTAAAA GCCTGCAAGG AAATC CCTTGCAGGC TTTTTTTATTCCTGA Cphamn1_0869 937914 - 938234 + | protein of unknown function DUF891 Cphamn1_0870 938234 - 938560 + | transcriptional regulator, XRE family Cphamn1_0871 939232 - 939531 + | DNA polymerase beta domain protein region Cphamn1_0872 939518 - 939862 + | protein of unknown function DUF86 TERM 1003 939976 - 939951 - f 71 -4.7 -4.59773 | gap 1, overlap 939952 939955 TTTCATTTCCAAAAA GTCATGCCGGAC TTG ATCCGGCATC-C ATGCGGTTCGAGCCT TERM 1004 939973 - 939955 - f 75 -11 -2.84171 | overlap 939951 939952 ATTTCCAAAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGCGGTTCGAG TERM 1005 940644 - 940631 - g 70 -8.1 -3.71527 | opp_overlap 940630 940643 TTTGAATGACGGAAA CGGCA AATC TGCCG GTAATATCGATATTG Cphamn1_0873 940326 - 941207 + | hypothetical protein Cphamn1_0875 942559 - 942080 - | hypothetical protein Cphamn1_0874 941209 - 942150 + | D12 class N6 adenine-specific DNA methyltransferase TERM 1006 943374 - 943350 - g 70 -9.3 -3.61356 | opp_overlap 943348, overlap 943339 ATTACCCAGTGGAAA CGGGAGTTTCT GGA AAAAGCTCCCG ACGTGTTCTCAAAAG Cphamn1_0878 943215 - 943505 + | transposase IS3/IS911 family protein TERM 1007 943689 - 943679 - g 71 -6.8 -4.18934 | CAGTACCTGAAGAAA CCGT ACT ACGG CGTGTATCGCATGTG Cphamn1_0879 943529 - 944368 + | Integrase catalytic region TERM 1008 944547 - 944535 - g 84 -4.8 -5.3104 | opp_overlap 944542 GCATCAAAAATAAAA CAGC TTCTT GCTG GGCATCGGCCTGGCA Cphamn1_0880 944505 - 945272 + | hypothetical protein TERM 1009 945548 - 945572 + F 100 -11.5 -4.90266 | opp_overlap 945548 ACAAGTAATCTGAAA GCCTGCATG TGAATGT CATGCAGGC TTTTTCATTCCTAAG TERM 1010 945572 - 945548 - f 87 -11.5 -3.69836 | opp_overlap 945548 ACAAGTAATCTGAAA GCCTGCATG TGAATGT CATGCAGGC TTTTTCATTCCTAAG TERM 1011 945647 - 945662 + F 83 -6.2 -5.10601 | overlap 945657 GAGATATCTTCTCAA TTGCAA AGTG TTGCAA TTTTTGTAATTTTGT Cphamn1_0881 946231 - 946932 + | hypothetical protein Cphamn1_0882 946952 - 948304 + | hypothetical protein TERM 1012 948348 - 948370 + T 74 -6.9 -4.30559 | overlap 948333 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT TERM 1013 948595 - 948609 + T 75 -8.6 -3.73072 | opp_overlap 948595 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_0884 954000 - 950128 - | hypothetical protein TERM 1014 951140 - 951127 - G 76 -3.1 -5.11613 | opp_overlap 951136 AGACCAGTCAAAAAA GTTGA TCAC CCAAC GACTTGGTGCTTGAT TERM 1015 953203 - 953218 + g 71 -5.4 -4.51196 | gap 1 TCCGGAGGTAATGGC TGCCAGC AGT GC-GGCA TTTTCTGAATTTGAG TERM 1016 955431 - 955421 - H 80 -5.4 -5.04385 | overlap 955425 TATAGCGGCAAAAAA CAAC GGG GTTG AAGCCCTCCGAGAGC TERM 1017 956970 - 956948 - H 75 -8.4 -3.75193 | AATTATAGACCCAAA CCTCATCGCC TTT GGCAATGATG GCCTGGCGTATTGCC TERM 1018 957101 - 957123 + H 90 -9.1 -4.82901 | CGACCCGTTTCTGGG CGGCATCAG GCAGG CGGATGCCG TTTTTATAAAGAAAA TERM 1019 959765 - 959752 - H 71 -2.4 -5.055 | overlap 959759 TCAAGCCGGAAAAAA TCCA GAATTG TGGA AACAAGCTCTTTACG TERM 1020 961055 - 961065 + H 77 -2.4 -5.37043 | GTGATGCGTAATTAT GACC AAA GGGC TTTTTTGTGTGCAAT TERM 1021 961429 - 961409 - g 70 -2.6 -4.9725 | ATCCCGAGACAAAAA CAAAAACG ATATA CATTCTTG GAATCGGGACGAAGG Cphamn1_0888 961144 - 961500 + | hypothetical protein Cphamn1_0889 961533 - 962105 + | transcriptional regulator, XRE family Cphamn1_0890 963906 - 962239 - | filamentation induced by cAMP protein Fic TERM 1022 963305 - 963319 + g 70 -9.2 -3.59262 | opp_overlap 963298 TCAATAATCCGGTGC CGGGCC GAT GGCCTG TTTGAACCTGTGAAA Cphamn1_0891 965047 - 964757 - | transcriptional regulator, AbrB family Cphamn1_0892 965298 - 965492 + | hypothetical protein TERM 1023 965711 - 965751 + G 76 -8.4 -4.18494 | gap 1, overlap 965711 CTTCAGCATACTTGT GGTT-ACCTCGCTTTTCAG GCGG CTGGGAGTCGAGGTAAACC TTTTCAATACAGATA TERM 1024 966229 - 966239 + G 72 -8.2 -3.91798 | opp_overlap 966229 966225 TGGTTGAAGCAGGAA GGGG ATG CCCC TTTCATTGCAGGTTC TERM 1025 966935 - 966957 + G 79 -7.1 -4.71061 | overlap 966939 TTACGCTTTGCCGCT CAAATTCGT TGAAC GCGAATTTG TTTTTGAGTGTACCT Cphamn1_0893 965604 - 967649 + | Radical SAM domain protein Cphamn1_0894 968808 - 967723 - | glutamate 5-kinase TERM 1026 967758 - 967770 + g 87 -4.7 -5.44119 | AGTCGTAATGGATCA GGGGC TTT GCACC TTTTTTTCCCATGAG TERM 1027 967922 - 967944 + g 70 -2.6 -4.91511 | overlap 967930 GGCAAAAGGCTGTTA GCTCTTTCCT GAG AGCGGAGGGC TTTTTCTGCTCCGGT Cphamn1_0895 970313 - 969051 - | sodium/hydrogen exchanger Cphamn1_0896 970908 - 970408 - | ferric uptake regulator, Fur family TERM 1028 970865 - 970888 + g 91 -4.6 -5.60993 | gap 1, opp_overlap 970854, overlap 970875 TCAACCTGCATTGTT TGCT-GGGAGG GCT CCTTCTGAGCA TTTTTTTGTGAAAAA Cphamn1_0897 972607 - 970970 - | MscS Mechanosensitive ion channel TERM 1029 971240 - 971258 + g 71 -6.8 -4.2687 | AAGATGCCCGTTTTT TTGTACTG ACT CAGTATAA TTTATGATTTTTGAA TERM 1030 972177 - 972198 + g 75 -10.9 -3.49482 | opp_overlap 972174, overlap 972176 TCAGCGACAGCATCT TCATCGCTG AATG CGGCGATGA TATTTCGTGATGTAC Cphamn1_0898 973049 - 973606 + | peptide deformylase Cphamn1_0899 973622 - 974575 + | methionyl-tRNA formyltransferase TERM 1031 976424 - 976410 - g 71 -5.7 -4.35926 | AGTCGAAAGCGAAAA CTGCT GGAAA AGCAG AAGGAAGGTAAAAAG Cphamn1_0900 974697 - 976514 + | GTP-binding protein LepA Cphamn1_0901 976517 - 976663 + | hypothetical protein TERM 1032 976948 - 976938 - f 79 -4 -5.2189 | overlap 976944 CTAACCATTAAAAAA CAAA CAT TTTG GCAAAAGGCACGGGA Cphamn1_0902 976946 - 977773 + | signal peptidase I Cphamn1_0903 978225 - 977767 - | hypothetical protein Cphamn1_0904 978325 - 979818 + | anthranilate synthase component I TERM 1033 980119 - 980163 + G 74 -7.5 -4.15664 | gap 2, opp_overlap 980119 GCTGAATCGGCAACA CCTTCGGTCGTGACTATTTTT ACCGA AAAAACAGTCA--ACCGAAGG TTTGTCTCTCCCTTT Cphamn1_0905 979894 - 981402 + | protease Do TERM 1034 981456 - 981483 + F 100 -11.4 -6.09888 | opp_overlap 981456 981455 981461 CTGTGAAACATAGAG GTAAAGTCAGCG TTAC TGCTGGCTTTAC TTTTTTTTATTGACA TERM 1035 981654 - 981643 - g 70 -2.2 -5.01732 | AAGTTCTGGAAAAAA TCGC TGAA GCAA GAGCTCATGGAGATC TERM 1036 981741 - 981725 - g 83 -9.5 -4.19238 | opp_overlap 981730, overlap 981728 GCGTCAACTGGAAAA CAAGATC GGT GATCTTG AAAGCAAACTTACAA TERM 1037 981949 - 981934 - g 73 -5.4 -4.72272 | CTCCTGTAGGAAAAA GCCTTC TTGG AAAGGC TGTCGGCGACAAGGT Cphamn1_0906 981543 - 982025 + | transcription elongation factor GreA Cphamn1_0907 982049 - 982273 + | hypothetical protein Cphamn1_0908 982279 - 983031 + | Triose-phosphate isomerase TERM 1038 983069 - 983097 + T 100 -14.6 -4.11216 | opp_overlap 983061 983058, overlap 983063 983070 GAAATCATGCATCAT CGCAGGGGCGAA CATGT TTCGCCCCTGCA TTTTGCCAGTAGCCA TERM 1039 983070 - 983096 + T 100 -18.1 -3.06515 | opp_overlap 983061 983058, overlap 983063 983069 AAATCATGCATCATC GCAGGGGCGAA CATGT TTCGCCCCTGC ATTTTGCCAGTAGCC Cphamn1_0909 984866 - 983175 - | thiamine biosynthesis protein ThiC Cphamn1_0910 985236 - 985478 + | Transglycosylase-associated protein TERM 1040 986201 - 986214 + G 74 -2.3 -5.1417 | CGGGGGGCTGATTGC GCTTG CTTT CGGGC TTTTTGCTTTTGTCG Cphamn1_0911 985605 - 986954 + | PUCC protein Cphamn1_0912 987256 - 988200 + | Radical SAM domain protein Cphamn1_0913 988481 - 988380 - | hypothetical protein TERM 1041 988610 - 988622 + H 100 -4.8 -6.01369 | CATTTTCAATGTATC CGCA GATAG TGCG TTTTTTTCTTCTTTG Cphamn1_0914 988799 - 988927 + | hypothetical protein TERM 1042 988998 - 988949 - f 100 -8.9 -5.78622 | gap 1 GTAGTCGAAAAAAAA CAATTCATTCAC-TGAATAAAAAG AAA CTTTTTCCTCCCGTGAATGAACTG ATCAGACTGTCTGCT TERM 1043 989561 - 989541 - f 72 -8.3 -3.60627 | opp_overlap 989541 TGAGCCGACGTGAAA CTGAGAAGC ACA GGTTCTCAG AAATGCTCGGTGTAT Cphamn1_0915 989829 - 989984 + | hypothetical protein Cphamn1_0916 990084 - 990338 + | hypothetical protein TERM 1044 990366 - 990350 - f 100 -3.6 -5.95946 | opp_overlap 990362 TTAAGAAGAAAAAAA CCTGCA TATTG TGCCGG GGCGGGGTTGTTTTT TERM 1045 990393 - 990405 + F 70 -6.2 -4.16016 | TTTTATTCCCGGAGA CGCC ATTCA GGCG TTTGTTCCCCGATGA TERM 1046 991007 - 991034 + G 76 -5.6 -4.84311 | gap 1, opp_overlap 991004, overlap 991021 ATCAGGAAAATACTG GCGGC-GCTTC CGCAGAA GAAGCAGTCGC TTTTCTTCTCTGCCA Cphamn1_0917 990488 - 991744 + | DEAD/DEAH box helicase domain protein TERM 1047 991756 - 991781 + T 89 -11.9 -3.71378 | opp_overlap 991761, overlap 991761 ATAGCTGTCTTATCA CAAAACCCCGG GATT CCGGGGTTTTC TCTTTGTTACCTGTC TERM 1048 991761 - 991776 + T 100 -11.8 -4.89838 | opp_overlap 991761, overlap 991756 TGTCTTATCACAAAA CCCCGG GATT CCGGGG TTTTCTCTTTGTTAC TERM 1049 991776 - 991761 - T 100 -11.8 -4.46212 | opp_overlap 991761 991756 TGTCTTATCACAAAA CCCCGG GATT CCGGGG TTTTCTCTTTGTTAC Cphamn1_0918 992219 - 991788 - | 6-pyruvoyl tetrahydropterin synthase and hypothetical protein Cphamn1_0919 992588 - 993040 + | peptidase S24 and S26 domain protein Cphamn1_0920 993055 - 994326 + | DNA-directed DNA polymerase Cphamn1_0921 994547 - 995341 + | serine O-acetyltransferase Cphamn1_0922 996541 - 995348 - | Chorismate synthase TERM 1050 996144 - 996157 + g 72 -9.5 -3.48276 | overlap 996154 CGTGCCGCAGTTTCA CGGGC TGAC GCCCG TTCTATGACAGGACG TERM 1051 996583 - 996562 - R 100 -15.9 -4.03234 | TGTCCTGGAGAGAAA CCGGCTGCA GGGC TGCAGCCGG AAGATGAAATGAGTC Cphamn1_0923 997598 - 996612 - | Porphobilinogen synthase TERM 1052 998105 - 998139 + G 90 -6.3 -5.23292 | gap 1, overlap 998103 998107 TTCTCGATTCAATGT GATG-GCCGCTGCGGC ACTT GGCGCACCGGCACACC TTTTATTTTATGTAG TERM 1053 998445 - 998455 + G 80 -4.6 -5.08086 | overlap 998441 GATTTATGTGTCGGC GTGG TTG CCGC TTTTCTCTTTTTTCT Cphamn1_0924 998040 - 1000145 + | integral membrane sensor hybrid histidine kinase TERM 1054 1000958 - 1000916 - g 72 -4.1 -4.8543 | opp_overlap 1000928, overlap 1000918 1000931 GAACGGTTACAAAAA CTTGAAGAAATACAAGAGC CTCTC GCTCGTGATCTTCTTCATG AGACTGATTCTGAAA Cphamn1_0925 1000595 - 1001587 + | hypothetical protein Cphamn1_0926 1001584 - 1002891 + | amine oxidase Cphamn1_0927 1002888 - 1005002 + | integral membrane sensor hybrid histidine kinase Cphamn1_0928 1005070 - 1005261 + | hypothetical protein Cphamn1_0929 1005266 - 1006024 + | histidinol-phosphate phosphatase Cphamn1_0930 1006078 - 1007430 + | protein of unknown function DUF195 Cphamn1_0931 1007455 - 1007652 + | hypothetical protein Cphamn1_0932 1008524 - 1007775 - | Uroporphyrinogen-III synthase TERM 1055 1008154 - 1008143 - G 76 -3 -5.06414 | TGCCTCGAAGAAAAA GAAA CGAT TTTC CCTGAATTTCCTCCG TERM 1056 1008417 - 1008453 + g 73 -9.4 -3.76107 | opp_overlap 1008415 CCAGCCCGAAGCAGG CCTGATCTCGATTGTC GGAAA GACAACCGAGCCCAGG TTATACTTTTTCAAT Cphamn1_0933 1009465 - 1008524 - | porphobilinogen deaminase Cphamn1_0934 1010774 - 1009494 - | glutamyl-tRNA reductase TERM 1057 1010390 - 1010406 + g 83 -5.1 -5.1287 | CGGATTGAACTTCAA CGGCTAT TCG ATAGGCG TTTTTTACCTGTCCA Cphamn1_0935 1011740 - 1010892 - | cytochrome c assembly protein TERM 1058 1010938 - 1010927 - G 76 -4.4 -5.00884 | ACGTCGGGGAAAAAA TGCT CATG AGCA TAATAAGTGTGGTTG TERM 1059 1012250 - 1012273 + G 71 -11 -2.73741 | opp_overlap 1012250, overlap 1012249 1012246 TTCGTGCTTCGTAAA GCGCTTGAGC TGAA GCTCAAGCCC ATTGTCGTTATCAAT TERM 1060 1012273 - 1012250 - g 79 -11 -3.53012 | opp_overlap 1012249 1012246 1012250 TTCGTGCTTCGTAAA GCGCTTGAGC TGAA GCTCAAGCCC ATTGTCGTTATCAAT Cphamn1_0936 1011899 - 1013725 + | GTP-binding protein TypA TERM 1061 1013975 - 1013987 + T 76 -2.7 -5.18357 | CGGCTTCTTGCTTCT GAATT CTC GATTC TTTTTTCCTGGCTTC Cphamn1_0937 1015122 - 1014004 - | chlorophyllide reductase iron protein subunit X TERM 1062 1014091 - 1014107 + g 91 -4.4 -5.61596 | gap 1, overlap 1014091 1014092 GATCCCCTTTATTCC G-GCTGC TTCC GCAGCGC TTTTTTTCTCCACCT Cphamn1_0938 1016137 - 1015160 - | chlorophyll synthesis pathway, BchC TERM 1063 1015251 - 1015281 + g 89 -2.5 -5.81412 | overlap 1015269 TAGGCCTCGGCCAGA TCAGCATTCACAG GGTGG CTGTGGGTGAAGA TTTTTTTTGCCTGCA Cphamn1_0939 1016621 - 1016145 - | 2-vinyl bacteriochlorophyllide hydratase TERM 1064 1016485 - 1016473 - G 71 -7.7 -3.97947 | opp_overlap 1016469 1016468 GTTACCCACGAGAAA TCGTC AAC GACGA TTCCGGTTTTATACA Cphamn1_0940 1018401 - 1016722 - | extracellular solute-binding protein family 5 TERM 1065 1017049 - 1017064 + g 71 -5.4 -4.57073 | CAGGGCTGCATCGTA CCGGAA CTCG TTCTGG TTTTTCAGAAAAATG TERM 1066 1017394 - 1017376 - G 75 -8.8 -3.86897 | TTCAGGGCCCATAAA CCCGTCGA TGA TCGACTGG CGGTCTATGGCATAG Cphamn1_0941 1018480 - 1019421 + | Thioredoxin-disulfide reductase Cphamn1_0942 1020227 - 1019415 - | LmbE family protein Cphamn1_0943 1020232 - 1020669 + | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TERM 1067 1020718 - 1020673 - T 81 -9.6 -3.90586 | gap 2 ACAGGAGTGTAGAAA TGACTATT-AAAAATG-AAAAG AGGA CTTTTACATTTTTCAATAGTCA ATAGTCAATAGTCAT Cphamn1_0944 1022179 - 1020737 - | two component, sigma54 specific, transcriptional regulator, Fis family TERM 1068 1021013 - 1021031 + g 73 -5.2 -4.74103 | GTTTTTACAGCTTAT CGCGGTTC TCT GAATGGCG TTTTTGAGTTCACGA TERM 1069 1021319 - 1021335 + g 88 -3.7 -5.67063 | ACTCCGCTCGCTTTT TTCGC CAACTCT GCGAA TTTTTTTCTCCTGGA TERM 1070 1022294 - 1022304 + r 79 -6.8 -4.63932 | overlap 1022303 TTCTATTTCTGGCGC GGGA TTG TCCC TTTTCTTGAAGGATC Cphamn1_0945 1023084 - 1022281 - | hypothetical protein TERM 1071 1023043 - 1023064 + g 71 -6.5 -4.21885 | overlap 1023028 1023046 1023057 CGTTTCATTTTGAGC CGTTTCCGG TGTG CCGGAACTG TTTCTGATTTCTTCT Cphamn1_0946 1023336 - 1023223 - | hypothetical protein Cphamn1_0947 1024138 - 1023455 - | glycosyl transferase family 2 Cphamn1_0948 1024734 - 1024135 - | hypothetical protein TERM 1072 1024660 - 1024676 + g 70 -2.1 -5.00138 | GAACGCATCTCCGGT CGCAGCT GCA AGACGCG TTTTTACTTTCCCTG TERM 1073 1024687 - 1024699 + g 70 -9.1 -3.60296 | ACGCGTTTTTACTTT CCCTG GTT CAGGG TTTCGGGTAAAAATA TERM 1074 1024898 - 1024931 + r 73 -10.5 -3.01924 | gap 1 AACACTTTCCTGAGG TTATCCGGAAGAG-CT GTG AGACTTTTCCGGATAG TGTTGCAGGGAGCTC Cphamn1_0949 1026314 - 1024953 - | Carotene 7,8-desaturase TERM 1075 1026292 - 1026280 - G 77 -10.5 -3.53091 | ATGGCTGCGCTTAAA CCGGC TAC GCCGG CTCCGAAGATTGCTA TERM 1076 1026411 - 1026423 + r 77 -3.3 -5.29846 | opp_overlap 1026411, overlap 1026412 ATTATTCTAAATTCA GGCTG GTT CAGCG TTTTTCTTTGGGGTT Cphamn1_0950 1026618 - 1026418 - | hypothetical protein Cphamn1_0951 1026732 - 1026890 + | hypothetical protein Cphamn1_0952 1026916 - 1027440 + | transcriptional regulator, AsnC family TERM 1077 1027586 - 1027574 - g 87 -7.7 -5.03314 | opp_overlap 1027574 GCCATGCGTAAAAAA CTTCC AAA GGAAG TCTATCGGGCATTGC TERM 1078 1028538 - 1028554 + G 73 -3 -4.96106 | AGCCGGGTGATACTC CTGAGT CGAAT ATTCAG TTTTTGGTATTTCTC Cphamn1_0953 1027496 - 1029637 + | glutamine synthetase catalytic region Cphamn1_0954 1029854 - 1029606 - | hypothetical protein TERM 1079 1029665 - 1029644 - G 100 -9.4 -5.88471 | gap 1, opp_overlap 1029645 1029646, overlap 1029646 GAGCACTAAAAAAAA CAGGGGGGC GACAA GCCCCCC-G TTTTTTTTGATAGCC TERM 1080 1029645 - 1029665 + g 100 -9.6 -5.86061 | opp_overlap 1029644 1029646, overlap 1029646 AGCACTAAAAAAAAC AGGGGGGC GACAA GCCCCCCG TTTTTTTTGATAGCC TERM 1081 1029646 - 1029664 + g 91 -13.1 -4.10552 | opp_overlap 1029644 1029646, overlap 1029645 GCACTAAAAAAAACA GGGGGGC GACAA GCCCCCC GTTTTTTTTGATAGC TERM 1082 1029664 - 1029646 - G 100 -13.1 -4.5787 | opp_overlap 1029646 1029645, overlap 1029644 GCACTAAAAAAAACA GGGGGGC GACAA GCCCCCC GTTTTTTTTGATAGC Cphamn1_0955 1030284 - 1029865 - | protein of unknown function UPF0047 TERM 1083 1030188 - 1030204 + g 77 -12.3 -3.09492 | GACCTTCACGGATGC GGCTCTC CCC GAGAGCC TGTTCGACTTCGGAA TERM 1084 1030344 - 1030366 + r 83 -10.8 -3.61356 | opp_overlap 1030343, overlap 1030345 ATTTCTAAATTATAG TGTAAAAAGT TTT ACTTTTTACA TTTACCCTGAATAAT TERM 1085 1030345 - 1030358 + r 71 -3.9 -4.81249 | opp_overlap 1030343, overlap 1030344 TTTCTAAATTATAGT GTAAA AAGT TTTAC TTTTTACATTTACCC Cphamn1_0956 1032053 - 1030647 - | transposase IS4 family protein Cphamn1_0957 1032182 - 1032685 + | hypothetical protein Cphamn1_0958 1032712 - 1033494 + | putative transcriptional acitvator, Baf family Cphamn1_0959 1034713 - 1033634 - | 3-dehydroquinate synthase Cphamn1_0960 1035309 - 1034710 - | Shikimate kinase TERM 1086 1034873 - 1034891 + g 100 -5.2 -6.13 | overlap 1034861 1034867 1034875 TACCGCGGTTCCCGA TGCTCGAG CAG CGCGAGTA TTTTTTTTTCGATCT TERM 1087 1034875 - 1034889 + g 73 -5.6 -4.70383 | overlap 1034861 1034867 1034873 CCGCGGTTCCCGATG CTCGAG CAG CGCGAG TATTTTTTTTTCGAT TERM 1088 1035426 - 1035448 + H 79 -4.2 -5.186 | opp_overlap 1035421 1035420, overlap 1035428 ATAAAAATACTTTCT TTGAAAACCT GCA ATGTTTTCGA TTTTTCTCTGTTTTG Cphamn1_0962 1035779 - 1037230 + | glycerol kinase Cphamn1_0963 1038548 - 1037220 - | MiaB-like tRNA modifying enzyme YliG TERM 1089 1037405 - 1037417 + g 80 -4.8 -5.06414 | CTACCTCCTCGACGA GCAC CTTCA GTGC TTTTTCTTCGAGCGC Cphamn1_0964 1039662 - 1038529 - | queuine tRNA-ribosyltransferase TERM 1090 1039925 - 1039947 + G 70 -3.4 -4.8543 | overlap 1039928 1039930 GAAGAAAAAGGTCAG CATGCCTCTT TTC AAGGGCTATG TTTTTGTGAGGATTA Cphamn1_0965 1039770 - 1040279 + | NusG antitermination factor TERM 1091 1040323 - 1040335 + G 70 -10.5 -2.94365 | opp_overlap 1040316, overlap 1040322 TGAAAGTACTGGTGA CCGGC GCT GCCGG ATTTATAGGCTATAC Cphamn1_0966 1040307 - 1041329 + | NAD-dependent epimerase/dehydratase Cphamn1_0967 1042289 - 1041564 - | putative transcriptional regulator Cphamn1_0968 1043871 - 1042324 - | lysyl-tRNA synthetase TERM 1092 1043316 - 1043339 + g 95 -11 -4.57482 | opp_overlap 1043316 1043315 1043313 GATTGACGATAAGAT CCACGTACCG CTGA CGGTACCTGG TTTCTTTATCACTGA TERM 1093 1043339 - 1043316 - G 70 -11 -2.56747 | opp_overlap 1043316, overlap 1043315 1043313 GATTGACGATAAGAT CCACGTACCG CTGA CGGTACCTGG TTTCTTTATCACTGA TERM 1094 1043648 - 1043670 + g 100 -12 -5.15167 | AAGGTCATGATGCGG CCGGCAACAG CGA CTGTTTCCGG TTTTTCTTCCTGATA Cphamn1_0969 1044867 - 1043932 - | Squalene/phytoene synthase TERM 1095 1044084 - 1044097 + g 85 -3.8 -5.41143 | GGCTGCTCACCTTTA CAGC AATCCG GCTG TTTTTTTCAAGCATG TERM 1096 1044335 - 1044348 + g 80 -3.1 -5.252 | gap 1 ATGCCAAGTTCAATG GCG-TG GTC CAGCGC TTTTTTATCGCAGTA TERM 1097 1045732 - 1045755 + G 73 -11 -2.87132 | opp_overlap 1045731, overlap 1045725 TCAACGCTGATGAAT CGTCTCTGTC CTGA GGCAGAGGCG TATGTAGAGGACCGG Cphamn1_0970 1045072 - 1046373 + | GTP-binding proten HflX Cphamn1_0971 1046363 - 1046779 + | protein of unknown function UPF0054 TERM 1098 1047740 - 1047763 + G 76 -7.4 -4.36366 | TTTGCCTATGTAGGA CAGGGGACTC TTCT GATTCTCCTG TTTCTCTGTTTTCTC Cphamn1_0973 1047590 - 1048075 + | protein of unknown function DUF456 Cphamn1_0974 1049411 - 1048605 - | protein of unknown function DUF164 TERM 1099 1049467 - 1049448 - R 100 -8.6 -6.20267 | GGAAAAATAAAAAAA GCACCTCT GCAA AAAGGTGC AAGGTGCGAATGCAG Cphamn1_0975 1049896 - 1049717 - | ribosomal protein L33 Cphamn1_0976 1050144 - 1051394 + | diaminopimelate decarboxylase TERM 1100 1051439 - 1051464 + T 83 -12.7 -3.02511 | opp_overlap 1051439, overlap 1051446 CGAGAAACACAGAAA GCAGGGATGTA GCAT TACATTCCTGC TATTAAGCCACTGAG TERM 1101 1051464 - 1051439 - T 87 -10.5 -4.31166 | opp_overlap 1051439 1051446 CGAGAAACACAGAAA GCAGGGATGTA GCAT TACATTCCTGC TATTAAGCCACTGAG Cphamn1_0977 1052364 - 1051483 - | 5,10-methylenetetrahydrofolate reductase TERM 1102 1051643 - 1051657 + g 71 -5.6 -4.58395 | ACTTCTTCATCATTT GGCGCT TCA AGCACC TTTTTGAGGAGTGCG TERM 1103 1051693 - 1051719 + g 83 -5 -5.1861 | TATCCTTGCGCCGAG GGCCAGTTCGGA CAT TTTGATCAGGCC TTTTTTCGTGGTGAC TERM 1104 1053135 - 1053167 + G 78 -6.4 -4.87665 | gap 1 TAGCGGCACTTGTTC CTCCCGGACATGAAC AGCA GTTTAT-TCAGGGAG TTTTTCTCGGTCAGA TERM 1105 1053833 - 1053850 + G 73 -2.7 -5.0133 | gap 1, overlap 1053824 1053833 1053835 GATCTGGCGCTCTAT CC-TGCAT CGA GTGCATGG TTTTTTGCCAGGATG TERM 1106 1053949 - 1053971 + G 76 -2.7 -5.18866 | gap 1, overlap 1053950 1053951 1053952 ATGGATTGCTGTCTA TTA-TGCGGC TGTT GCCGCAGTAC TTTTCTTTCTTTACC Cphamn1_0978 1052450 - 1054618 + | ComEC/Rec2-related protein Cphamn1_0979 1054615 - 1054878 + | hypothetical protein Cphamn1_0980 1054875 - 1055204 + | Cupin 2 conserved barrel domain protein Cphamn1_0981 1055489 - 1055205 - | hypothetical protein Cphamn1_0982 1056041 - 1055508 - | NUDIX hydrolase TERM 1107 1055759 - 1055781 + g 73 -12 -2.62983 | opp_overlap 1055765, overlap 1055762 CACGCTGTGCAGCTT CAAGCAGGGT TTC ACCCGGCTTG TCATGTACCCCTGCA Cphamn1_0983 1057531 - 1056044 - | binding-protein-dependent transport systems inner membrane component TERM 1108 1057598 - 1057575 - R 100 -10.4 -5.65177 | opp_overlap 1057575, overlap 1057595 ACAGTCATAAAAAAA GCTGCTTTTC AAGC AAAAAGCAGC TTTTACTGAATATCT TERM 1109 1057575 - 1057598 + r 86 -9.7 -4.3014 | opp_overlap 1057575 1057595 ACAGTCATAAAAAAA GCTGCTTTT CAAGCA AAAAGCAGC TTTTACTGAATATCT Cphamn1_0984 1058254 - 1057625 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 TERM 1110 1057989 - 1057979 - G 76 -5.4 -4.82901 | TCCTGCTGAGAAAAA CTGA AAA TCAG CATGAATGATCTTGT Cphamn1_0985 1059251 - 1058256 - | ribose-phosphate pyrophosphokinase Cphamn1_0986 1059387 - 1060475 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Cphamn1_0987 1063390 - 1060730 - | glycoside hydrolase 15-related TERM 1111 1061566 - 1061577 + g 72 -3.6 -4.75308 | overlap 1061560 TTTTGCTCAGCTTGT CGGC GAGC GTCG TTTTTGCCTCTTCCT TERM 1112 1063540 - 1063555 + H 71 -4.6 -4.71828 | TTCAGGCTGCTTTAA GGTTGC GGGT GCTACC TTTTCTTCATGCAGT Cphamn1_0988 1063620 - 1063973 + | hypothetical protein TERM 1113 1064449 - 1064414 - g 70 -9.1 -3.5393 | gap 1 ACCAGCTTCTGGAAA CGATGTCTCAGAACGG CATTT CCGTTCTG-GATACCG GGGATTCCATTGAGG Cphamn1_0989 1064038 - 1064523 + | hypothetical protein Cphamn1_0990 1064535 - 1065203 + | two component transcriptional regulator, winged helix family TERM 1114 1065739 - 1065753 + G 83 -2.7 -5.47218 | TTCGTGCTCCATGAT CTGCG AATAG CGCTG TTTTTTTCCCTGGCG TERM 1115 1065903 - 1065873 - g 79 -9 -4.2231 | overlap 1065890 AATTACCAGGGAAAA CCTCGACGAAAGAA TAG TGCTTCCTTCGAGG AAAGATGAGCTCTAT TERM 1116 1065957 - 1065939 - g 76 -11 -3.21099 | CTCGTTCACGATCAA CAGCCTGC TTG ACAGGCTG CAGGATGCCTATGTC Cphamn1_0991 1065208 - 1066644 + | integral membrane sensor signal transduction histidine kinase Cphamn1_0992 1066740 - 1067282 + | hypothetical protein TERM 1117 1067697 - 1067666 - g 87 -4.2 -5.47399 | overlap 1067668 TGAACTGCAAAAAAA CTGTACGGTCTGTC ACGA GCCTGACCGTCCTG AGGATGCACTGCACG Cphamn1_0993 1067289 - 1068164 + | hypothetical protein Cphamn1_0994 1068263 - 1068760 + | cytochrome c class I TERM 1118 1068856 - 1068828 - T 100 -18.2 -5.75342 | opp_overlap 1068828 1068853 CGGGTGGAAAAAAAA GAGGGTGACCGG TTTAG CCGGCCACCCTC TTTTTGAATAAAGAG TERM 1119 1068828 - 1068856 + T 100 -16.7 -4.65895 | opp_overlap 1068828, overlap 1068853 CGGGTGGAAAAAAAA GAGGGTGACCGGT TTA GCCGGCCACCCTC TTTTTGAATAAAGAG Cphamn1_0995 1069572 - 1068883 - | OmpA/MotB domain protein TERM 1120 1069549 - 1069539 - G 86 -5.4 -5.24416 | GAATCATAAGAAAAA CAAG AGG CTTG GTCAATTGTTGTACA TERM 1121 1069635 - 1069605 - H 76 -7.7 -4.26327 | opp_overlap 1069609, overlap 1069602 TATTGACGAAAACAA TGATTGGATTTCC TGTTC AGAAATCCATTCA ATATAATAGTAGTAT Cphamn1_0996 1069834 - 1070787 + | hypothetical protein TERM 1122 1070769 - 1070809 + T 78 -6.2 -4.60255 | gap 1, opp_overlap 1070771, overlap 1070770 1070771 GCATTTTGCTTCGAC AATGTCATTTCTCCGCTGA AGAG TCAGCGGAGAA-TGTCAGG TTTTTCGCGGGTTAT TERM 1123 1070770 - 1070808 + T 74 -9.7 -3.3543 | gap 1, opp_overlap 1070771, overlap 1070769 1070771 CATTTTGCTTCGACA ATGTCATTTCTCCGCTGA AGAG TCAGCGGAGAA-TGTCAG GTTTTTCGCGGGTTA TERM 1124 1070807 - 1070771 - T 95 -13.2 -3.28791 | gap 1, opp_overlap 1070770 1070769 1070771 ATTTTGCTTCGACAA TGTCATTTCTCCGCTGA AGAG TCAGCGGAGAA-TGTCA GGTTTTTCGCGGGTT TERM 1125 1070771 - 1070807 + T 84 -13.2 -2.60776 | gap 1, opp_overlap 1070771, overlap 1070770 1070769 ATTTTGCTTCGACAA TGTCATTTCTCCGCTGA AGAG TCAGCGGAGAA-TGTCA GGTTTTTCGCGGGTT Cphamn1_0997 1071274 - 1070792 - | membrane protein Cphamn1_0998 1072546 - 1071314 - | protein of unknown function DUF214 TERM 1126 1072219 - 1072201 - G 82 -10.2 -3.85698 | opp_overlap 1072208 TCCTGTTTGCATAAA CGGCCAGG TTT CCCGACCG GGAGACTTTCAAGCC Cphamn1_0999 1073999 - 1072746 - | protein of unknown function DUF214 TERM 1127 1073569 - 1073541 - G 70 -3.2 -4.75372 | gap 2, overlap 1073542 ATGAGGGAGGAAAAA CCGGCCTTCAGACA GGT CGCCTGAAG-C-GG TACGCAGGTAGTCGG Cphamn1_1000 1074753 - 1074070 - | ABC transporter-related protein Cphamn1_1001 1076034 - 1074760 - | efflux transporter, RND family, MFP subunit Cphamn1_1003 1078122 - 1077568 - | hypothetical protein Cphamn1_1004 1079291 - 1078209 - | D-alanine/D-alanine ligase Cphamn1_1005 1079791 - 1079384 - | CoA-binding domain protein TERM 1128 1080545 - 1080565 + G 77 -10.4 -3.61178 | TTCTTGAAGATTTTC CTCCCGGG GCAGA TCCGGGAG TTTCAAGTCAGTAAA Cphamn1_1006 1079989 - 1080579 + | hypothetical protein Cphamn1_1007 1080781 - 1081599 + | biotin/lipoate A/B protein ligase TERM 1129 1081672 - 1081686 + F 100 -7.8 -6.37666 | ATATGCATTATGCTC TCCCGC GGA GTGGGA TTTTTTTTATTTTGT Cphamn1_1008 1081746 - 1082579 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase Cphamn1_1009 1082657 - 1083430 + | CDP-diacylglycerol/serine O-phosphatidyltransferase Cphamn1_1010 1083628 - 1083882 + | phosphoribosylformylglycinamidine synthase, purS Cphamn1_1011 1083895 - 1084596 + | phosphoribosylformylglycinamidine synthase I TERM 1130 1084727 - 1084742 + G 79 -5.4 -4.94262 | CAATACCTCGTTCAG CGTCAT CATG GTGACG TTTGTTTTTCCTCTC TERM 1131 1084861 - 1084876 + G 76 -6.8 -4.56597 | overlap 1084863 1084874 TTCTCTCGCCTGTTC TTGGCG CATC CGCCGA TTTTTCCGGCAGAAA TERM 1132 1084961 - 1084983 + G 78 -6.3 -4.81852 | gap 2 CGGTTTTACCGGTCC CGGCTTGGCGA TTC TCGCC--GCCG TTTTGTTCATTATCG TERM 1133 1085757 - 1085786 + G 82 -7.9 -4.62772 | gap 1 ACATTCGGCAAGGCC TCCGCAA-TCGCCG GGC CGGTGATTTTCGGA TTTATTTCATTTCAG Cphamn1_1012 1084653 - 1085939 + | major facilitator superfamily MFS_1 TERM 1134 1086635 - 1086651 + G 70 -2.1 -4.94902 | CAACACGGCAACCGT TCCAACC GTC GGGGGGA TTTTTCTGCTGATTA TERM 1135 1087386 - 1087416 + G 74 -4.7 -4.87037 | GAAGATGGAGAGTTT GCGTTACATTGTG ATATA CATGAGGTGACGC TTTTTGATCTCTATT Cphamn1_1013 1086312 - 1087595 + | ribonuclease BN TERM 1136 1088197 - 1088209 + G 77 -9.1 -4.05788 | CGCGACAATCGCTTC CCGCT GTC AGCGG TTTAATTTCAAGCGG Cphamn1_1014 1087670 - 1088866 + | DNA polymerase III, subunits gamma and tau TERM 1137 1088870 - 1088848 - f 95 -7.6 -5.40072 | GGCGTCTGAAAAAAA GCCGGCAGTG CAG CACTGACTGC ATCACGGCTTGAAAC Cphamn1_1015 1088989 - 1089477 + | DNA polymerase III, gamma/tau subunit TERM 1138 1089951 - 1089984 + G 71 -6.1 -4.33153 | gap 1, opp_overlap 1089967, overlap 1089954 TGTTGCCGACGAGCT GC-AGACTTCAGAAGA ACT TCGTCTGAAGTATCGC TTTCTTGATCTTCGC TERM 1139 1090700 - 1090687 - g 72 -8.1 -3.86981 | opp_overlap 1090686 CAGTATAAGGAAGAA GGTCC GAAA GGACC GATTGTCAAGTTTTT TERM 1140 1090975 - 1090947 - g 73 -10.3 -3.29144 | CGAGTTTTCCCATAA CCCTTTCTCCATG CCT CAGGGAGAAATGG AGGCGCTGGAAACCA Cphamn1_1016 1089562 - 1091388 + | aspartyl-tRNA synthetase TERM 1141 1091452 - 1091476 + F 71 -7.8 -3.82202 | opp_overlap 1091452 CCGGTTTATTTGAAA GAGGCTGTCT CAAAA GGGCGGCCTC TTGTATTTAGAACTG TERM 1142 1092937 - 1092953 + F 79 -2.9 -5.42259 | CTTTTCAAGGAACTG CTGATCG GGG TGACCAG TTTTTTTCGAGATCC TERM 1143 1093007 - 1093036 + F 93 -12.2 -4.08767 | overlap 1093022 CAAAAGCTATACCCT CTCTTCTGGCTG TCAGGC CAGCCGGAGGAG TTTTGCGGGCCTGGG TERM 1144 1093239 - 1093251 + F 82 -6.9 -5.00884 | opp_overlap 1093239, overlap 1093236 GGACCTGTCAAGGGA GCGGT TGC GCCGC TTTTTTGACAAGGAT TERM 1145 1093401 - 1093423 + F 86 -7.7 -4.87291 | CTATATGGATGTCGA GCTGCAGAA AAAGC TTCTGCCGC TTTTTCATTACAGTC TERM 1146 1093899 - 1093887 - f 71 -4.8 -4.4648 | AGTGTTACCAGAAAA GGAC TGCGT GTCC GGACGAATGGCGAGA TERM 1147 1094602 - 1094591 - f 70 -5.8 -4.39166 | CCGTACACAGGAAAA CCGT ATCG ACGG GCTGGTGATCACCTT TERM 1148 1095043 - 1095053 + F 77 -2.4 -5.33405 | TGGAAGAGAGTGAGA GCAG TTT CCGC TTTTTGTTTGATGCA TERM 1149 1095481 - 1095471 - g 73 -5.4 -4.70511 | TGAAAAAGAAAAGAA CGAT TTC ATCG GATTTAGCTGCATTG Cphamn1_1018 1095455 - 1096453 + | putative PAS/PAC sensor protein Cphamn1_1019 1096994 - 1098400 + | transposase IS4 family protein Cphamn1_1020 1099107 - 1099613 + | RNA polymerase, sigma-24 subunit, ECF subfamily Cphamn1_1021 1100872 - 1099649 - | NADH:flavin oxidoreductase/NADH oxidase TERM 1150 1100384 - 1100395 + g 85 -3.6 -5.49809 | opp_overlap 1100374, overlap 1100362 ATGAAGCTGAATTCC GTCG AACC CGGC TTTTTTTGCCCTTTC Cphamn1_1022 1101690 - 1100869 - | Methyltransferase type 11 Cphamn1_1023 1103448 - 1102045 - | Radical SAM domain protein Cphamn1_1024 1104031 - 1103588 - | thioesterase superfamily protein TERM 1151 1104232 - 1104255 + r 80 -5.4 -5.16132 | CTTCTGTGCTAATCG TCTGAAACTA GCTA TATTTTCAGA TTTTGTTTTGGTATC Cphamn1_1025 1105252 - 1104494 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cphamn1_1026 1106390 - 1105350 - | S-adenosylmethionine/tRNA-ribosyltransferase-isomerase TERM 1152 1106533 - 1106480 - R 74 -11.1 -2.76249 | gap 1, opp_overlap 1106491 1106509, overlap 1106491 CAAATAGTCGAATCA GTCGCTGAAAAGCCCCGCATTCCTGA CAA TCCTG-ATGCAGGGCTTTTCAGAGAG CTAAGAGACGTTGTC Cphamn1_1027 1109689 - 1106534 - | beta-phosphoglucomutase family hydrolase TERM 1153 1107154 - 1107172 + g 93 -3.8 -5.75478 | overlap 1107150 TCAGTATCCTGTCCA TACGGTGG ATG TTGCCGTA TTTTTTTCTGTACTT TERM 1154 1107438 - 1107448 + g 73 -5.4 -4.72986 | overlap 1107429 ATTCCGTCCCCGGAA CTTC CCG GAAG TTTTTCATGGAACTC Cphamn1_1028 1110986 - 1109724 - | hypothetical protein TERM 1155 1110053 - 1110066 + g 70 -3.1 -4.82901 | TATCTAGGCCGGTAT CTTCT ATGC GGAAG TTTTTCTGCCCAGGA Cphamn1_1029 1111756 - 1111103 - | dTMP kinase Cphamn1_1030 1112615 - 1111773 - | alpha/beta hydrolase fold TERM 1156 1112056 - 1112073 + g 76 -3.3 -5.08824 | overlap 1112057 TCTATCGCGCCCCTG TCTCTCG ATAC CGTGAGG TTTTTTGCATAGGAA TERM 1157 1112341 - 1112353 + g 91 -5.5 -5.40474 | overlap 1112334 1112342 AATATTTTTCTGCTT TCAGG TGT CCTGG TTTTTTTCAGGAACT Cphamn1_1031 1113943 - 1113242 - | short-chain dehydrogenase/reductase SDR TERM 1158 1113809 - 1113823 + g 76 -8.6 -4.19238 | CGATCCCAGCTCATC CTTGAG CGC CTCAAG TTTTGACGTTGAGCG TERM 1159 1114019 - 1114035 + H 71 -2.3 -5.09259 | overlap 1114020 GGTACGCTGTAATCC TTCGTTT ACA AAATGAG TTTTCTTTTCAGATA TERM 1160 1114190 - 1114203 + G 91 -3.1 -5.72254 | TTGACGGAAGTGTGA CCATT CCGG AGTGG TTTTTTGTTCTTTGA Cphamn1_1032 1114081 - 1114218 + | hypothetical protein TERM 1161 1114473 - 1114457 - g 82 -3.6 -5.3236 | overlap 1114459 ATAACGGATAAAAAA CGCTCA GCCTA TGTGCG GAGAATTGATTTCCT Cphamn1_1033 1114265 - 1115965 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain protein TERM 1162 1116718 - 1116684 - g 72 -3.5 -4.81851 | gap 1, opp_overlap 1116685, overlap 1116686 ATCGAAACCGAAAAA CTGCC-CCTCGGCG TCCTCTAC CGCCAAGACGGCCG AGAACTCTACGAAGA Cphamn1_1034 1115967 - 1116818 + | pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit Cphamn1_1035 1117628 - 1116954 - | hypothetical protein Cphamn1_1036 1118095 - 1117625 - | hypothetical protein TERM 1163 1117657 - 1117680 + g 87 -9.5 -4.4261 | opp_overlap 1117648, overlap 1117658 TATTAATTCCCCGTA GGGGCAGGC CCCTGT GCCTGCCCG TTTTCCTATTCCAGC TERM 1164 1117658 - 1117679 + g 81 -13 -3.25084 | opp_overlap 1117648, overlap 1117657 ATTAATTCCCCGTAG GGGCAGGC CCCTGT GCCTGCCC GTTTTCCTATTCCAG TERM 1165 1117732 - 1117769 + g 86 -14.2 -3.17825 | opp_overlap 1117731 1117726 1117735, overlap 1117735 CATGCGAAATACGAC CAACGTCCGGGCAACC ACGGGG GGTTGCCCCTACGTTG TATATTGGTAATTTT TERM 1166 1117766 - 1117735 - G 70 -10.1 -3.3062 | opp_overlap 1117732 1117735, overlap 1117731 1117726 GCGAAATACGACCAA CGTCCGGGCAACC ACGGGG GGTTGCCCCTACG TTGTATATTGGTAAT TERM 1167 1117735 - 1117766 + g 77 -10.1 -3.71124 | opp_overlap 1117735 1117731 1117726, overlap 1117732 GCGAAATACGACCAA CGTCCGGGCAACC ACGGGG GGTTGCCCCTACG TTGTATATTGGTAAT TERM 1168 1118194 - 1118217 + H 71 -9.5 -3.05844 | TTCCCCATCCCCGTA GGGGCAGGC CCCCGT GCCTGCCCG TCTTCCAATGCCAGA Cphamn1_1037 1118537 - 1119061 + | hypothetical protein Cphamn1_1038 1120343 - 1119270 - | hypothetical protein Cphamn1_1039 1120910 - 1120425 - | nuclease (SNase domain protein) Cphamn1_1040 1120996 - 1122885 + | ABC transporter-related protein Cphamn1_1041 1125002 - 1122888 - | Prolyl oligopeptidase TERM 1169 1124482 - 1124518 + g 76 -5.1 -4.7629 | opp_overlap 1124481 1124491 GAGGGTGAAGCGAAC CGGCAACGATCTATCTT CTC AGGATAGAGCGCTCCTG TTTTTACGTTCATGA TERM 1170 1125179 - 1125210 + r 93 -15.2 -3.052 | opp_overlap 1125180, overlap 1125184 CCTAATCGGAAAAAA ACAAAGGCCACGGT TTTC GCCGTGGCCTTTGA TCTATCTGTCGCCAT TERM 1171 1125209 - 1125180 - R 100 -18 -5.47399 | opp_overlap 1125179 1125184 CTAATCGGAAAAAAA CAAAGGCCACGG TTTTCG CCGTGGCCTTTG ATCTATCTGTCGCCA TERM 1172 1125184 - 1125205 + r 100 -13.7 -3.92267 | opp_overlap 1125180, overlap 1125179 TCGGAAAAAAACAAA GGCCACGGT TTTC GCCGTGGCC TTTGATCTATCTGTC Cphamn1_1042 1126078 - 1125212 - | hypothetical protein TERM 1173 1125548 - 1125559 + g 90 -5.8 -5.24989 | overlap 1125556 GTATGCCTTTTGAAT CCTG CGAT CAGG TTTTTTCCTGTATAC Cphamn1_1043 1126938 - 1126360 - | NADPH-dependent FMN reductase TERM 1174 1126993 - 1126975 - R 74 -11 -2.75845 | opp_overlap 1126988, overlap 1126971 1126972 AGATGTGAAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATCCGGTTTTGC Cphamn1_1044 1128242 - 1127202 - | pseudouridine synthase, RluA family TERM 1175 1129056 - 1129046 - g 87 -4.6 -5.40072 | GCGGTGGTAAAAAAA GCAG AAA CCGC GGATGGGGGTATTCG Cphamn1_1045 1128308 - 1129717 + | dihydrolipoamide dehydrogenase TERM 1176 1130030 - 1130042 + F 77 -3.3 -5.24531 | AAGAAAGAAAAAGGG GGCTC TTT GATCC TTTTTTGTAAAGCAT TERM 1177 1130655 - 1130676 + G 73 -8.7 -3.73647 | GCGCTTACAAGCGGC GTCAAGGCT TTTG AGCCTGGAC TTCTTGCTCAGTCCA Cphamn1_1046 1130178 - 1131329 + | magnesium chelatase ATPase subunit I Cphamn1_1047 1131329 - 1133185 + | magnesium chelatase ATPase subunit D TERM 1178 1133214 - 1133244 + F 100 -9.7 -5.75538 | opp_overlap 1133214 ATAGATTTCACGAAA CCTCCCCCGTTGT GATTG ATGACAGGGGAGG TTTTTGTTTTTTAGG TERM 1179 1134630 - 1134620 - g 76 -4.6 -5.00616 | overlap 1134622 GGGCTGGGTAAAAAA GCCA GCG CGGC CCTGCTCGATGTTCC TERM 1180 1136614 - 1136591 - g 72 -3.8 -4.75063 | gap 1, overlap 1136582 AGAAAAGGTGAAAAA CAGAC-GGAGA TTC TCACCAGCCTG TTCGGTACCGTTGAT Cphamn1_1048 1133351 - 1137172 + | magnesium chelatase, H subunit Cphamn1_1049 1138909 - 1137419 - | inosine-5'-monophosphate dehydrogenase TERM 1181 1138294 - 1138319 + g 83 -13.5 -3.28497 | opp_overlap 1138293 1138301, overlap 1138301 TTCTTTTCTGAATAT CCTTAAAGGTT ATCA AACCTTTAAGG TTGCCTTTGCCATCA TERM 1182 1139198 - 1139233 + H 75 -9.1 -3.59979 | opp_overlap 1139201 1139206, overlap 1139206 CCTCCCTCTCCGCAG CAAGAAAAGCTTCCG ATAATC CGGAGGCTTTTTTGG TTTCAGGTGAACGAA TERM 1183 1139225 - 1139206 - H 74 -5.6 -4.71426 | opp_overlap 1139198 1139206, overlap 1139201 TCCGCAGCAAGAAAA GCTTCCGA TAAT CCGGAGGC TTTTTTGGTTTCAGG TERM 1184 1139206 - 1139225 + H 95 -7.1 -5.37593 | opp_overlap 1139206 1139201, overlap 1139198 TCCGCAGCAAGAAAA GCTTCCG ATAATC CGGAGGC TTTTTTGGTTTCAGG TERM 1185 1139374 - 1139409 + H 100 -13.5 -3.59979 | opp_overlap 1139377 1139382, overlap 1139382 CCTCCCTCTCCGCAG CAAGAAAAGCTTCCG ATAATC CGGAGGCTTTTTTTG TTTCAGGTGAACGAA TERM 1186 1139382 - 1139401 + H 100 -7.1 -5.95539 | opp_overlap 1139377 1139382, overlap 1139374 TCCGCAGCAAGAAAA GCTTCCG ATAATC CGGAGGC TTTTTTTGTTTCAGG TERM 1187 1139401 - 1139382 - H 74 -5.6 -4.71426 | opp_overlap 1139382 1139374, overlap 1139377 TCCGCAGCAAGAAAA GCTTCCGA TAAT CCGGAGGC TTTTTTTGTTTCAGG TERM 1188 1140002 - 1139981 - H 95 -7.3 -5.40072 | opp_overlap 1139981 CTCTCCGCAAAAAAA GCAATTCTC ATGC GAGGATTGC TTTTTTTATTTGAGA TERM 1189 1139981 - 1140002 + H 100 -9.5 -5.95539 | opp_overlap 1139981 CTCTCCGCAAAAAAA GCAATTCTC ATGC GAGGATTGC TTTTTTTATTTGAGA TERM 1190 1140134 - 1140169 + H 72 -7 -4.23892 | CCTCTCTCTCCGCAG CAAAAAAAGCTGCC AATAAACC GGAGGCTTTTTTTG TTTTCAGTCGTTCGA Cphamn1_1050 1140463 - 1141251 + | Beta-lactamase Cphamn1_1051 1142045 - 1141731 - | hypothetical protein TERM 1191 1141933 - 1141943 + gT 90 -8.2 -5.05782 | overlap 1141924 AGGTCGGGGAAGATT GCGG TTC CCGC TTTTTTCCAGTCGAT TERM 1192 1142006 - 1142026 + gT 100 -3.2 -5.77632 | CCCGTTCATCCTGTT CAGTCCTG AATTC CGGAACTG TTTTTTTCTGCTTTT Cphamn1_1052 1142325 - 1142005 - | protein of unknown function DUF497 TERM 1193 1142143 - 1142163 + gH 72 -8.3 -3.59372 | TCTTCTTTCTGCGTT TGTTTTGCC AAG GGCAAACCA TCTTCTTTCGATTCC Cphamn1_1053 1142530 - 1143030 + | hypothetical protein Cphamn1_1054 1143299 - 1143027 - | hypothetical protein Cphamn1_1055 1143547 - 1143296 - | putative transcriptional regulator, CopG family Cphamn1_1056 1143754 - 1143894 + | hypothetical protein Cphamn1_1057 1143935 - 1144813 + | Methyltransferase type 11 TERM 1194 1145092 - 1145080 - f 73 -6.3 -4.41716 | ACAGGAGACAATAAA TCTGT GGC ACAGA TAATAAAAAATGATG Cphamn1_1058 1145138 - 1145365 + | addiction module component, TIGR02574 family Cphamn1_1059 1145362 - 1145643 + | plasmid stabilization system Cphamn1_1060 1145688 - 1146086 + | nitrogenase-associated protein TERM 1195 1146975 - 1146986 + G 70 -2.2 -5.02074 | ATGACTACATTCATT CCTT GGTT GAGG TTTTTTCAGAGGTCA TERM 1196 1147389 - 1147375 - g 74 -4.3 -4.75404 | overlap 1147380 AAACGGCATGAAAAA CAAAC GTACT GTTTG GTCAATCAATACTGA Cphamn1_1062 1146548 - 1147645 + | DNA binding domain protein, excisionase family Cphamn1_1063 1148399 - 1147626 - | Type II site-specific deoxyribonuclease Cphamn1_1064 1149284 - 1148703 - | pentapeptide repeat protein TERM 1197 1150819 - 1150795 - H 74 -10.7 -2.71364 | opp_overlap 1150788 1150805, overlap 1150797 1150799 TCAGCTTGGCAAGGA GAGAGAGGACG TGA CGCTCTCTCTC GAAGCTTCACTTTCT TERM 1198 1154175 - 1154152 - g 71 -7.4 -4.07568 | gap 1, opp_overlap 1154151 1154152 GCCCTGGTTGCAAAA GGCACCGCTGA TCG TCTGC-GTGCC ATTCTGCTGACAACG Cphamn1_1066 1151299 - 1154406 + | acriflavin resistance protein Cphamn1_1067 1154557 - 1155732 + | efflux transporter, RND family, MFP subunit TERM 1199 1156781 - 1156791 + G 71 -6.8 -4.13304 | ACAGGTCATTTTCAC CCTG CTG CAGG TTTTCGCACTGGTTT TERM 1200 1157126 - 1157145 + G 78 -2.1 -5.31877 | TCTTCCCGTTGGCTT TCTCGGT GGTTCG ATCGGGA TTTTTTATCGTCAGT TERM 1201 1157222 - 1157235 + G 76 -3.1 -5.06414 | gap 1, overlap 1157222 1157223 ACTGACGCTCAGTCC G-GCAC TTT GTGCGC TTTTTCTTACGAAGG TERM 1202 1157392 - 1157382 - g 70 -2.4 -5.03314 | CTCATCCGCAAAAAA TGGC TAA GCCT TGGCGGGCTGGCTGC TERM 1203 1158205 - 1158189 - g 73 -2.9 -5.055 | opp_overlap 1158194 GTAACCCTGAAAAAA GTCTATG GTC CCCAGAC AGTGGATCATTTCAA Cphamn1_1068 1155756 - 1158914 + | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family TERM 1204 1159092 - 1159121 + G 80 -2.1 -5.52384 | gap 1, overlap 1159083 1159082 1159090 1159088 1159094 AGGAGTGGCAGCAGT GCCCTTTGCGGGAA CTG TTCCC-TACAGGAC TTTTTTTGCTGACAA TERM 1205 1159302 - 1159314 + G 70 -4.8 -4.63218 | AACTACCTCCGATTT CGGA TCGAC TCCG TTTTCTTCCGGGAAG TERM 1206 1159424 - 1159411 - g 72 -3.7 -4.90381 | opp_overlap 1159421, overlap 1159406 1159412 CGCAACACAAGAAAA GCGGC GCTT GCCGA GTACCTCCGGTCAGT TERM 1207 1159937 - 1159947 + G 71 -6.8 -4.20136 | CCAATGCCCTGACTT CCAG TGA CTGG TTTACTTTTCCCGGT Cphamn1_1069 1158898 - 1160358 + | RND efflux system, outer membrane lipoprotein, NodT family Cphamn1_1070 1160443 - 1160694 + | hypothetical protein Cphamn1_1071 1160736 - 1161005 + | hypothetical protein Cphamn1_1072 1163164 - 1161026 - | protein of unknown function DUF255 TERM 1208 1161912 - 1161933 + g 70 -8.7 -3.53444 | AGTTTTTCCCGTGCA TCGTCCGTG ATTT CGCGGATGA TTTCCGAAGGCATGG TERM 1209 1162175 - 1162201 + g 83 -8.7 -4.33819 | GTTCGGAAAACTGTC GGCGTCTTCTG CAGAA TAGAAGCCGCC TTTGTTGTCGGTCAT Cphamn1_1073 1163294 - 1163416 + | hypothetical protein Cphamn1_1074 1163466 - 1164338 + | peptide methionine sulfoxide reductase Cphamn1_1075 1164716 - 1164468 - | hypothetical protein TERM 1210 1164513 - 1164557 + g 70 -2.2 -4.99861 | gap 1, overlap 1164507 1164505 1164514 1164544 CTGCAGGGATGCTGG ATCA-GCCTCTGTGTAACAGT CGAT GTTATTACACGGGGGCGTGAC TTTTTCTGATTGGTG Cphamn1_1076 1164776 - 1165144 + | Dinitrogenase iron-molybdenum cofactor biosynthesis protein TERM 1211 1165159 - 1165195 + T 100 -12.6 -3.79906 | opp_overlap 1165158 GGGGCATCACCATAC CCGTGTAAATTGAA CAGTATAGT TTCAATTTACACGG TTCTTCTGAGAGTCC Cphamn1_1077 1165706 - 1165266 - | hypothetical protein TERM 1212 1165864 - 1165844 - H 77 -11.2 -2.68544 | overlap 1165840 AATAGTAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGGAGTGGAG TERM 1213 1165981 - 1165961 - H 77 -11.2 -2.6952 | overlap 1165957 1165958 CAGGACAAGAATGGA TTCCCGTG TCTAG CACGGGAA TGATAGGAAAGGGAA TERM 1214 1167664 - 1167650 - H 75 -8.6 -3.73072 | opp_overlap 1167650 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG TERM 1215 1167913 - 1167891 - H 86 -9.8 -4.30559 | opp_overlap 1167890, overlap 1167908 1167911 AACAAAACGTTAAAA CGGTAGCCCT ATA AGGACAACCG GGATTTTTTCACCGG TERM 1216 1168309 - 1168276 - g 77 -10.3 -3.61398 | gap 1, opp_overlap 1168277 1168278, overlap 1168278 GTCGCTGCTGAAGAA CAGACCGGAGACTGTT CGA AACTGCCTCCGGCC-G TTGTCTTGGACATCG TERM 1217 1168308 - 1168278 - g 88 -14 -3.38812 | opp_overlap 1168277 1168278, overlap 1168276 CGCTGCTGAAGAACA GACCGGAGACTGTT CGA AACTGCCTCCGGCC GTTGTCTTGGACATC TERM 1218 1168765 - 1168743 - g 74 -2.6 -5.08601 | opp_overlap 1168745, overlap 1168745 CGACGTCAAGAAAAA CATCACCCCC GCC GAGCGTGATC GTTTGGTCGAGGAAA Cphamn1_1079 1168069 - 1168896 + | acid phosphatase (Class B) Cphamn1_1080 1169781 - 1168927 - | beta-lactamase domain protein TERM 1219 1169813 - 1169844 + r 100 -17.4 -2.95091 | opp_overlap 1169817, overlap 1169807 1169817 GAGTAACGGCGGATT GAAACAGCCCGTTC TGAA GGGCGGGCTGTTTC TGTATGGCTTCAGGT TERM 1220 1169817 - 1169840 + r 100 -12.4 -4.15061 | opp_overlap 1169817, overlap 1169807 1169813 AACGGCGGATTGAAA CAGCCCGTTC TGAA GGGCGGGCTG TTTCTGTATGGCTTC Cphamn1_1081 1170434 - 1169862 - | surface antigen msp4 family protein Cphamn1_1082 1170690 - 1172060 + | transposase IS4 family protein TERM 1221 1172306 - 1172331 + F 70 -6.1 -4.18018 | gap 1 AGGTCGGGATCTCAG GTTGGCTTCGCC TTT GGC-AGGCCCAC TTTTGGCTCGAGAGG Cphamn1_1083 1172355 - 1172606 + | protein of unknown function DUF86 Cphamn1_1084 1172611 - 1173639 + | zinc-binding alcohol dehydrogenase family protein Cphamn1_1085 1174006 - 1173659 - | hypothetical protein Cphamn1_1086 1174633 - 1174097 - | hypothetical protein TERM 1222 1174138 - 1174148 + g 74 -6.8 -4.30576 | CGATGGAACTGCACA CCTG ATA CAGG TTTTCATGGTCAGGC TERM 1223 1174763 - 1174744 - R 78 -8.6 -4.07678 | TTTTAAAAGAGGAAA GGACGAAA ATTT TTTCGCCC CTACAATTCAACACC Cphamn1_1087 1175471 - 1174842 - | glycosyl transferase family 2 Cphamn1_1088 1175908 - 1175489 - | protein of unknown function UPF0047 TERM 1224 1175704 - 1175714 + g 82 -6.8 -4.88918 | opp_overlap 1175704 CTCTGCTGGAAATGA GCTG CTC CAGC TTTTCTTTGAAGTCC Cphamn1_1089 1176906 - 1175905 - | bacteriochlorophyll/chlorophyll synthetase TERM 1225 1176862 - 1176881 + g 80 -2 -5.40072 | overlap 1176863 1176865 ATGCTTTTTGCCGTA TTTCCGCT GTTC AGCGGTAC TTTTTTTGAGGAAAA Cphamn1_1090 1177120 - 1177362 + | hypothetical protein TERM 1226 1177429 - 1177386 - T 89 -14.1 -3.09273 | opp_overlap 1177397, overlap 1177397 GCGGTTGAAGATACA TCAATAAAAAAGCGGCAGG TTGGCT CCTGCCGCTTTTTTATATA CTAAACGAAGCAAAA TERM 1227 1177418 - 1177397 - T 100 -13 -5.5353 | opp_overlap 1177397, overlap 1177386 TACATCAATAAAAAA GCGGCAGG TTGGCT CCTGCCGC TTTTTTATATACTAA TERM 1228 1177397 - 1177418 + T 100 -13 -5.39721 | opp_overlap 1177397 1177386 TACATCAATAAAAAA GCGGCAGG TTGGCT CCTGCCGC TTTTTTATATACTAA Cphamn1_1091 1177633 - 1177448 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_1092 1177989 - 1177801 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_1093 1179098 - 1178136 - | PhoH family protein Cphamn1_1094 1180108 - 1179119 - | ADP-L-glycero-D-manno-heptose-6-epimerase TERM 1229 1180351 - 1180371 + r 100 -11.9 -4.56597 | opp_overlap 1180351 TGGACAAAACAAAAA GCCGTTTCG GGA TGAAACGGC TTTTTAACAGAGCGG TERM 1230 1180371 - 1180351 - R 100 -11.2 -5.54907 | opp_overlap 1180351 TGGACAAAACAAAAA GCCGTTTC GGGAT GAAACGGC TTTTTAACAGAGCGG Cphamn1_1095 1180813 - 1180391 - | sigma-24 (FecI-like) TERM 1231 1180918 - 1180908 - H 93 -5.4 -5.5604 | overlap 1180914 TGAATTAATAAAAAA GAGA TAT TCTC AACCTGAAGCAGGAC Cphamn1_1096 1181119 - 1182216 + | histidinol-phosphate aminotransferase Cphamn1_1097 1182216 - 1182758 + | tRNA/rRNA methyltransferase (SpoU) TERM 1232 1183211 - 1183232 + G 73 -5.2 -4.62783 | GTTCAAGCGTTTTGT TCCGTATA TGTGGT TGTACGGA TTTTTCGCCTGGATC Cphamn1_1098 1182798 - 1183616 + | alpha/beta hydrolase fold Cphamn1_1099 1184182 - 1183613 - | Aminoacyl-tRNA hydrolase TERM 1233 1184033 - 1184059 + g 79 -8.8 -4.15833 | TCCTTTTCCTCTGTG GGTGATTTTCGC ATG GTGAAAATTGCC TTTTCCCGTGGTCAT Cphamn1_1100 1184851 - 1184342 - | hypothetical protein TERM 1234 1184419 - 1184399 - G 70 -11.2 -2.68544 | overlap 1184395 AATAGTAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGTCAGGGAGAGGGG TERM 1235 1184548 - 1184528 - G 71 -11.2 -2.76936 | overlap 1184524 CAGGAAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGGCAGGGAGTGGAG TERM 1236 1184628 - 1184610 - G 70 -11 -2.70354 | overlap 1184606 1184607 CCCGTCAGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGGGGTTTTCA TERM 1237 1184677 - 1184657 - G 71 -11.2 -2.76936 | overlap 1184653 CAGGAAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGGAGAGGGG TERM 1238 1184757 - 1184739 - G 70 -11 -2.70354 | overlap 1184735 1184736 CCCGTCAGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGGGGTTTTCA TERM 1239 1184806 - 1184786 - G 71 -11.2 -2.76936 | overlap 1184782 CATGAAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGGAGTGGAG TERM 1240 1184942 - 1184909 - R 82 -10.4 -4.07687 | gap 1, opp_overlap 1184909 1184901, overlap 1184914 ATTTCCTGCTCAAAA TACAAGAGGCTGCCC TTTTG AGGCAGCCTCT-GCA TATGGTGCTTATCGA TERM 1241 1184938 - 1184914 - R 100 -13.6 -3.95435 | opp_overlap 1184909 1184901, overlap 1184909 CTGCTCAAAATACAA GAGGCTGCCC TTTTG AGGCAGCCTC TGCATATGGTGCTTA Cphamn1_1101 1187042 - 1184964 - | V-type H(+)-translocating pyrophosphatase TERM 1242 1185553 - 1185538 - G 73 -10.4 -3.33525 | overlap 1185536 TCTATGGATACAACA TCCGCC TGCT GGCGGA AAGCGGCAAAAAGCG TERM 1243 1186915 - 1186891 - G 81 -6.3 -5.00616 | TCCCGTTTCAAAAAA GCTACAGCGCC ATC AGCGATGTGGC CTGCGATAGTTACCA Cphamn1_1102 1188300 - 1187275 - | Endonuclease/exonuclease/phosphatase TERM 1244 1187496 - 1187511 + g 73 -5.4 -4.61527 | overlap 1187489 GAAACCATCTGCTCC GGAAGT AGCA GCTTCC TTTTTCACGACTTTT TERM 1245 1188264 - 1188246 - G 71 -6.6 -4.14725 | GATTGAAAGGAGAAA CGGCCGTC AGT GACAGCAG AAGAGTTATGCAGAT Cphamn1_1103 1188602 - 1189000 + | hypothetical protein Cphamn1_1104 1189450 - 1189022 - | protein of unknown function DUF6 transmembrane Cphamn1_1105 1189549 - 1190259 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1246 1190431 - 1190450 + G 70 -2.8 -4.76274 | overlap 1190424 GTTATCTCTCGTTTT CCAGCGAT ATTG ATTTCTGG TTTTCTGTTGCTTTC Cphamn1_1106 1190286 - 1190924 + | SNARE associated Golgi protein TERM 1247 1190981 - 1190993 + F 86 -3.4 -5.59655 | GGTTTCCGGATGCTC CCAA ATGTG TTGG TTTTTTATTCCTTTG TERM 1248 1191677 - 1191699 + G 70 -3.3 -4.82128 | opp_overlap 1191677, overlap 1191672 1191692 GGCTCTGGGAAAAAA CATCGACGG TGATT CCGGAGATG TTTTCTGTTTAATGG TERM 1249 1191699 - 1191677 - g 73 -3.3 -5.00616 | opp_overlap 1191677 1191672 1191692 GGCTCTGGGAAAAAA CATCGACGG TGATT CCGGAGATG TTTTCTGTTTAATGG Cphamn1_1107 1191219 - 1192130 + | Transketolase domain protein Cphamn1_1108 1192139 - 1192672 + | Protein of unknown function methylase putative Cphamn1_1109 1192813 - 1193310 + | pantetheine-phosphate adenylyltransferase Cphamn1_1110 1193333 - 1194541 + | aminotransferase class I and II Cphamn1_1111 1194642 - 1195424 + | phospholipid/glycerol acyltransferase Cphamn1_1112 1195518 - 1196483 + | PSP1 domain protein TERM 1250 1197780 - 1197807 + G 70 -9.8 -3.27022 | GGTGAACTGCCATAT GCGTGTACCGGT GAGG ACTGGGACGCGC TTGGTATCGACTGGG TERM 1251 1198138 - 1198107 - g 100 -6.6 -5.41143 | GATGCTGTAAAAAAA GGTGATGTCACC TGGCATAT GGCGAGATCACC GCAGTTGCAAAAAGG Cphamn1_1113 1196514 - 1198625 + | methionyl-tRNA synthetase TERM 1252 1198755 - 1198774 + F 100 -10 -5.56673 | opp_overlap 1198755 CACCACAATAAAAAA GCCGCATT ACAA AGTGCGGC TTTTTTATTGTACAT TERM 1253 1198774 - 1198755 - f 100 -7.8 -5.58179 | opp_overlap 1198755 CACCACAATAAAAAA GCCGCATT ACAA AGTGCGGC TTTTTTATTGTACAT Cphamn1_1114 1198888 - 1200129 + | hypothetical protein TERM 1254 1200240 - 1200260 + T 100 -11.2 -5.85737 | ATGCAAAGTTTGTAG GGGCGAAA AAATA TTTCGCCC TTTTTTTATTGATCT TERM 1255 1200334 - 1200354 + T 77 -11.2 -2.65808 | overlap 1200331 1200331 GTTTTTTTCCAGTCA TTCCCGTG CCTGA CACGGGAA TCCATTCTTCAGCCT TERM 1256 1200379 - 1200408 + T 73 -6.5 -4.32482 | gap 1 CAGCCTGATCATTTT TGTGGATGCCGGAT CAA GTCCGGCATG-ACA TTTTCCCTTATGGCT Cphamn1_1115 1201546 - 1200428 - | Cyclopropane-fatty-acyl-phospholipid synthase Cphamn1_1116 1202418 - 1201642 - | fatty acid hydroxylase TERM 1257 1201775 - 1201765 - G 71 -5.4 -4.58283 | GAAGCTCCCGAAAAA TCTG TCC CAGA AAGAGAGCATGCTGC TERM 1258 1202042 - 1202032 - G 70 -8.2 -3.74077 | overlap 1202014 TTCCACATAGTGAAA CCGC CAG GCGG TAGTGACATCCATCG TERM 1259 1202349 - 1202339 - G 73 -3.2 -5.00616 | CTGTTGGCGAAAAAA GGAA TAA CTCC TTCAAGAATCCAGAG Cphamn1_1117 1203183 - 1202611 - | anti-sigma-factor antagonist Cphamn1_1118 1204263 - 1203295 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1260 1203588 - 1203608 + g 71 -7.5 -4.00234 | CTTCTTTAAGCAGGC CGGATGCCA TCA TTGCGTCCG TTCTTGTATTGATTC TERM 1261 1204138 - 1204156 + g 71 -7.4 -4.06179 | GATCTGACGGGAATC CGCCGAAA CAA TTTCCGCG TTTATAGCTTTTGCC Cphamn1_1119 1204934 - 1204263 - | maf protein TERM 1262 1204668 - 1204685 + g 80 -4.7 -5.06816 | overlap 1204671 GTGTTTTGTCTGTTT GTTCGCG ACAG CGCGTGC TTTTTGTTCCGCGAT Cphamn1_1120 1206679 - 1204916 - | Na+/solute symporter TERM 1263 1205118 - 1205134 + g 71 -5.8 -4.34482 | opp_overlap 1205116, overlap 1205116 TTATCAGATACTACG TCCGGC ATCTG GTCGGA TATTTTTTTCCAGAA TERM 1264 1205493 - 1205479 - G 100 -7.1 -5.47431 | TGAATAGAGAAAAAA CCGCA ACGCA TGCGG TGAACACCTTTGCAA TERM 1265 1206626 - 1206608 - G 80 -2.3 -5.40072 | overlap 1206591 1206611 1206619 1206620 CCTTTTTGAAAAAAA GAGCCCG ATAAG CAGGGTC AGCACCAGATAGCCG Cphamn1_1121 1207617 - 1206706 - | PfkB domain protein TERM 1266 1207122 - 1207133 + g 91 -4.4 -5.57054 | GAATGAAGATGTCGA CTCT TGCA AGAG TTTTTTTGAGTTCTT Cphamn1_1122 1209546 - 1207657 - | alpha-amylase family protein TERM 1267 1210348 - 1210364 + G 79 -7.9 -4.45201 | CTGAAAAACATTGTC CCTGCAG ATC CTGCCGG TCTTTTTTTGTGGAA Cphamn1_1123 1209691 - 1210392 + | tRNA pseudouridine synthase A TERM 1268 1210457 - 1210481 + F 83 -10.7 -3.65812 | CCATCAGAAGGGAGG CCGGAGAGGGT ACA GTCTTCTCCGG TTGTATTAAAGGGAA Cphamn1_1124 1210571 - 1212361 + | Lytic transglycosylase catalytic Cphamn1_1125 1212585 - 1213781 + | arsenite-activated ATPase ArsA TERM 1269 1213814 - 1213831 + F 100 -9.1 -5.7946 | opp_overlap 1213814 TAGAGGAATAAAAAA CCTGCTC TCAT GGGCAGG TTTTTTTGTTAGGAA TERM 1270 1213831 - 1213814 - f 100 -6.9 -5.5353 | opp_overlap 1213814 TAGAGGAATAAAAAA CCTGCTC TCAT GGGCAGG TTTTTTTGTTAGGAA Cphamn1_1126 1213935 - 1215002 + | phospho-2-dehydro-3-deoxyheptonate aldolase Cphamn1_1127 1215061 - 1215264 + | hypothetical protein Cphamn1_1128 1215287 - 1216420 + | hypothetical protein Cphamn1_1129 1216460 - 1216630 + | hypothetical protein TERM 1271 1216707 - 1216652 - T 85 -13.4 -2.74865 | overlap 1216645 1216665 ATTATACAGAGAGGA TTCCCGTGTAAGACCTGTGAAATACA TGCT CATATTTCACGGGTCAGGCACGGGAA TGACTGAAAGGCAAT Cphamn1_1130 1217366 - 1216695 - | ABC transporter-related protein TERM 1272 1217256 - 1217270 + g 70 -2.7 -4.84359 | overlap 1217257 TCCACTGCCGTTCGC ACCGG AAATC CCGGC TTTTTCTCCGGATCC Cphamn1_1131 1218103 - 1217363 - | cobalt ABC transporter, inner membrane subunit CbiQ Cphamn1_1132 1218539 - 1218093 - | hypothetical protein Cphamn1_1133 1219132 - 1218536 - | cobalamin (vitamin B12) biosynthesis CbiM protein TERM 1273 1218735 - 1218751 + g 71 -5.8 -4.40552 | opp_overlap 1218735 AATCCGCAAAGAAAG CCGGTC ATGAC GACTGG TATTTTTTTGCTGGA TERM 1274 1218872 - 1218862 - G 71 -6.8 -4.19238 | CGCCGAACTGGAAAA GCAG TGC CTGC AGAAGCAGCGCTATA Cphamn1_1134 1219935 - 1219132 - | hypothetical protein TERM 1275 1219314 - 1219326 + g 88 -10.5 -4.21922 | opp_overlap 1219313 1219312 CCTGGGTGACAAAGG GCCCC GCA GGGGC TTTGCTTTTGCCTCC Cphamn1_1135 1220365 - 1219970 - | putative transcriptional regulator, CopG family TERM 1276 1220516 - 1220489 - R 95 -14.3 -3.14344 | opp_overlap 1220489 1220496, overlap 1220496 TATTGTTTTGAGCAA GAGAAAACGGG ACTGTG CCCGTTTTCTC TTCTGGAAAAAGCCT TERM 1277 1220489 - 1220516 + r 100 -14.3 -3.28791 | opp_overlap 1220489 1220496, overlap 1220496 TATTGTTTTGAGCAA GAGAAAACGGG ACTGTG CCCGTTTTCTC TTCTGGAAAAAGCCT TERM 1278 1220496 - 1220509 + r 73 -5.2 -4.73682 | opp_overlap 1220496 1220489, overlap 1220489 TTGAGCAAGAGAAAA CGGG ACTGTG CCCG TTTTCTCTTCTGGAA TERM 1279 1220509 - 1220496 - R 73 -5.2 -4.70583 | opp_overlap 1220489 1220496, overlap 1220489 TTGAGCAAGAGAAAA CGGG ACTGTG CCCG TTTTCTCTTCTGGAA Cphamn1_1136 1221258 - 1220599 - | hypothetical protein TERM 1280 1221311 - 1221340 + r 91 -11.3 -3.94877 | overlap 1221316 GCTTGTTGCTGTTTG TGGTTCCCCGGAG GAGT CTCCGGGGTTCCG TTGTTATTAACCGAT TERM 1281 1221316 - 1221335 + r 100 -15 -3.3363 | overlap 1221311 TTGCTGTTTGTGGTT CCCCGGAG GAGT CTCCGGGG TTCCGTTGTTATTAA Cphamn1_1137 1221688 - 1221347 - | nitrogen regulatory protein P-II Cphamn1_1138 1223039 - 1221711 - | ammonium transporter Cphamn1_1139 1223431 - 1223874 + | putative anti-sigma regulatory factor, serine/threonine protein kinase TERM 1282 1224254 - 1224264 + F 100 -4.6 -5.66989 | ATGTTTCAGGTGTGA CGGG AAC CTCG TTTTTTTGATCTTTG Cphamn1_1140 1224375 - 1226018 + | Glucose-6-phosphate isomerase Cphamn1_1141 1226197 - 1226000 - | hypothetical protein TERM 1283 1226493 - 1226530 + H 75 -10.7 -2.84467 | gap 1, overlap 1226490 1226495 GCATGGATGCCGGAT CACCCCCGTGAAATCTGA GCA TCT-ATTTCACAGGGGTG TACTATTCATTTGTG TERM 1284 1226659 - 1226696 + G 70 -10.7 -2.92496 | gap 1, overlap 1226656 1226661 GCATGGATGCCGGAT CACCCCCGTGAAATCTGA GCA TCT-ATTTCACAGGGGTG TACTATTCTTTGTAA Cphamn1_1142 1226561 - 1226773 + | hypothetical protein TERM 1285 1226847 - 1226879 + G 86 -6.2 -5.15167 | overlap 1226850 TCCAATCATCCTTTA GAGTCATCCTCGGG CCTGA CCCGAGGATCCATC TTTTTCTTGATCGTA Cphamn1_1143 1226813 - 1227046 + | hypothetical protein Cphamn1_1144 1228084 - 1227068 - | ApbE family lipoprotein Cphamn1_1145 1229336 - 1228110 - | putative transcriptional regulator, TetR family TERM 1286 1229607 - 1229586 - H 72 -8.6 -3.61517 | overlap 1229573 1229587 ACCGCGCCCCAAGAA CGCCCGCC GTCCAT GGCGGGCT AAGAAAAAGACTGAG TERM 1287 1229606 - 1229587 - H 79 -12.1 -2.76696 | overlap 1229573 1229586 CCGCGCCCCAAGAAC GCCCGCC GTCCAT GGCGGGC TAAGAAAAAGACTGA TERM 1288 1230474 - 1230488 + G 70 -4.2 -4.61566 | overlap 1230481 CTTGCCGATAGTGTC GGGCTT GGA AAGACC TTTTCTGCTTTAGGC TERM 1289 1230520 - 1230537 + G 71 -5.5 -4.46656 | overlap 1230521 TAATTAAATATTACC AGGAACG AAAC CGTTCCA TTTTAGTCTTATGCC Cphamn1_1146 1229646 - 1232894 + | helicase domain protein TERM 1290 1233483 - 1233473 - g 73 -3.2 -4.90869 | ATTAGCAAGGAAAAA CAGT TTA ACCG CAAGGTTGAGATTAA Cphamn1_1147 1232918 - 1233556 + | hypothetical protein TERM 1291 1233632 - 1233643 + G 81 -5.8 -5.02476 | opp_overlap 1233630 1233632 AGATAAAAACATAGA GCAG ATCG CTGC TTTTTTCCCCAATGT TERM 1292 1234775 - 1234765 - g 74 -4 -4.94992 | CCAAACCTACAAAAA TTCT AAA AGAA CTATCAAGATGTTCT TERM 1293 1234978 - 1234957 - g 74 -6.5 -4.37658 | overlap 1234958 1234960 AAGCCGGTTACAAAA CCATTGCCG AAAT CGGCAAAGA GCGCATAAGACGTGC Cphamn1_1148 1233582 - 1235516 + | Site-specific DNA-methyltransferase (adenine-specific) Cphamn1_1149 1235518 - 1238592 + | type III restriction protein res subunit TERM 1294 1238623 - 1238595 - f 71 -9 -3.314 | overlap 1238593 AATAATGAATTAAGA CCGCC-TACGCACA TCG TGTGC-TACGGCGG AAGAGGGGCACGCGG TERM 1295 1240731 - 1240718 - g 74 -2.4 -5.1167 | AATCCAACAGAAAAA GGTT TAAGGC AACC AGTTCCAATAAACGA Cphamn1_1150 1238801 - 1240864 + | protein of unknown function DUF262 TERM 1296 1240871 - 1240900 + F 78 -10.8 -3.27298 | gap 2, opp_overlap 1240869, overlap 1240873 AACACATAACAAGGC GCTTCAGCGGACGG AATA CCG-CCGCTG-AGC TTGATCGTTAGCCGA TERM 1297 1240873 - 1240899 + F 74 -10.9 -2.56164 | gap 1, opp_overlap 1240869, overlap 1240871 CACATAACAAGGCGC TTCAGCGGACGG AATA CCG-CCGCTGAG CTTGATCGTTAGCCG Cphamn1_1151 1240947 - 1243178 + | hypothetical protein TERM 1298 1243573 - 1243556 - T 71 -9.9 -3.05384 | overlap 1243561 GTGCGGGGCATCGAA GGCAACA GCAT TGTTGCC GATGACGAAGACCGG Cphamn1_1153 1244083 - 1243682 - | hypothetical protein Cphamn1_1154 1244339 - 1244070 - | transcriptional regulator, AbrB family TERM 1299 1244687 - 1244675 - H 70 -6.3 -4.25848 | AAGTCTGCATGAAAA TCTGT AGT ACAGA TAATAAATAATGTTA Cphamn1_1155 1244729 - 1244824 + | hypothetical protein TERM 1300 1244873 - 1244895 + T 74 -6.9 -4.30559 | overlap 1244858 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_1156 1246451 - 1245054 - | hypothetical protein TERM 1301 1245120 - 1245134 + g 70 -8.6 -3.73072 | opp_overlap 1245120 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT TERM 1302 1247697 - 1247685 - g 77 -9.1 -4.10612 | opp_overlap 1247685 ATTTACAAGGACAAA CAGCG AGA CGCTG TAATTGACACCATTA Cphamn1_1158 1247544 - 1248626 + | HNH endonuclease TERM 1303 1248680 - 1248642 - g 79 -8.2 -4.37211 | gap 2, overlap 1248644 GAAATGTATAACAAA GCGTTGCACCGGACGGCA AAAAG CGCCG-CCGGTG-AACTC AATGTTAGAAGCTGG Cphamn1_1159 1248630 - 1249658 + | hypothetical protein TERM 1304 1250152 - 1250166 + F 83 -7.2 -4.83615 | opp_overlap 1250152 1250154 GATCTTTGACAAGTA TACCAA ATA TTGGTA TTTTTATGGAAAATG Cphamn1_1160 1250190 - 1250441 + | putative addiction module antidote protein, CopG/Arc/MetJ family Cphamn1_1161 1250434 - 1250748 + | plasmid stabilization system Cphamn1_1163 1251046 - 1252185 + | glucose sorbosone dehydrogenase TERM 1305 1252199 - 1252211 + T 72 -5.5 -4.55295 | AGGAGTTCCCCAAGT TCTCC GGA GGGGA TTTGTTTGTCAGGGA TERM 1306 1252464 - 1252493 + T 70 -9.2 -3.14132 | opp_overlap 1252464 GAAACGAAAAAAAAA CAAAGGCCCCGG AACATG CCGGGACCTCTG TTACTGCAAGGGAAA TERM 1307 1252493 - 1252464 - T 100 -13.6 -6.28631 | opp_overlap 1252464 GAAACGAAAAAAAAA CAAAGGCCCCGG AACATG CCGGGACCTCTG TTACTGCAAGGGAAA Cphamn1_1165 1253177 - 1252539 - | hypothetical protein Cphamn1_1166 1254328 - 1253477 - | UspA domain protein Cphamn1_1167 1255831 - 1254341 - | sulphate transporter TERM 1308 1255719 - 1255686 - G 87 -9.7 -4.3207 | gap 1, overlap 1255688 ACAGAAATACAGAAA GAGGCGTAGAGCCCTA TTT TAGGA-TCTACGCCTG CGATGATAGAGAAGG TERM 1309 1255717 - 1255688 - G 85 -12.3 -3.74227 | gap 1, overlap 1255686 AGAAATACAGAAAGA GGCGTAGAGCCCTA TTT TAGGA-TCTACGCC TGCGATGATAGAGAA Cphamn1_1168 1257167 - 1256475 - | peptidase membrane zinc metallopeptidase putative TERM 1310 1257231 - 1257215 - H 74 -9.5 -3.27907 | opp_overlap 1257212, overlap 1257219 GGACATACAATGCAA TGAACTG AAA CAGTTCA GGGATGTTTATAGTT Cphamn1_1169 1257409 - 1258713 + | protein of unknown function DUF107 Cphamn1_1170 1258713 - 1259459 + | band 7 protein TERM 1311 1259470 - 1259482 + F 77 -4.8 -5.02074 | opp_overlap 1259466, overlap 1259466 GGTAGTGGAAAGGTG CAGG GTGTA CCTG TTTTTTCAACCATAA Cphamn1_1171 1259508 - 1259969 + | UspA domain protein Cphamn1_1172 1260957 - 1259950 - | LAO/AO transport system ATPase TERM 1312 1260107 - 1260123 + g 88 -3.7 -5.61596 | overlap 1260103 1260101 AGGTCGACCTGTGCT CTGAAGA GCA TGTTCAG TTTTTTTCTGCGAGT Cphamn1_1173 1264310 - 1260990 - | methylmalonyl-CoA mutase, large subunit TERM 1313 1263341 - 1263318 - G 70 -10.4 -2.95476 | overlap 1263323 AGGATCTATCACACA CTCAAGCATG CTTT CATACTTGAG AAGATGGTGTATGTT Cphamn1_1174 1266118 - 1264334 - | acetyl-CoA carboxylase alpha subunit-like protein TERM 1314 1265226 - 1265242 + g 85 -3.6 -5.44119 | GGCATCGTGCTCCAT TGGCCG ATAGG CTGCCA TTTTTTTACCCTCAA Cphamn1_1175 1266539 - 1266135 - | methylmalonyl-CoA epimerase TERM 1315 1266170 - 1266196 + g 93 -3.8 -5.8187 | overlap 1266186 CTATAAGAACTCTGT TTGTGTCTTTCG GGT TGAAAAATACAA TTTTTTTCTTACCTG Cphamn1_1176 1268431 - 1266536 - | AMP-dependent synthetase and ligase Cphamn1_1177 1269404 - 1268616 - | dimethyladenosine transferase Cphamn1_1178 1269477 - 1270460 + | Transketolase central region TERM 1316 1270600 - 1270583 - g 71 -11.3 -2.80988 | overlap 1270576 1270573 1270580 TGACATGATGAAGCA GCTCCAG CAGG CTGGAGC GAAAATGCAGGACGT Cphamn1_1179 1270548 - 1270883 + | hypothetical protein Cphamn1_1180 1270892 - 1271506 + | recombination protein RecR Cphamn1_1181 1271577 - 1272956 + | Carotene 7,8-desaturase TERM 1317 1273284 - 1273257 - f 100 -12.8 -4.53303 | opp_overlap 1273258, overlap 1273258 CACCCCGACACAAAA GGCGATTACGGA AGGT TCCGTAATCGCT TTTTTTATTCTTTTT TERM 1318 1273283 - 1273258 - f 100 -16.3 -3.315 | opp_overlap 1273258, overlap 1273257 ACCCCGACACAAAAG GCGATTACGGA AGGT TCCGTAATCGC TTTTTTTATTCTTTT TERM 1319 1273258 - 1273283 + F 100 -16.3 -6.04419 | opp_overlap 1273258 1273257 ACCCCGACACAAAAG GCGATTACGGA AGGT TCCGTAATCGC TTTTTTTATTCTTTT Cphamn1_1182 1273456 - 1274301 + | putative glycosyltransferase Cphamn1_1183 1274496 - 1275089 + | hypothetical protein TERM 1320 1275397 - 1275379 - T 74 -11 -2.70354 | opp_overlap 1275376, overlap 1275375 1275376 CCCGTCAGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGCGTTTTTTC TERM 1321 1275727 - 1275709 - T 74 -11 -2.70354 | opp_overlap 1275706, overlap 1275705 1275706 CCCGTCAGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGGGTTTTTTC TERM 1322 1275892 - 1275874 - T 74 -11 -2.70354 | opp_overlap 1275871, overlap 1275870 1275871 CCCGTCAGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGGGTTTTTTC TERM 1323 1275978 - 1276004 + T 74 -9.6 -3.30338 | opp_overlap 1275981 1275983 GGTCAAGCACGGGAA TGACAGAAAAGT GAA AGTTTTCTGTCA TTGTAGGCCCATTAT TERM 1324 1276033 - 1276065 + T 93 -2.9 -5.78622 | gap 1 ATTTCTTTCTTTGGT GAATT-TCAGGC TATATACTCT GCCTGAGAATTC TTTTTTTTCCGGTAG Cphamn1_1184 1277232 - 1276087 - | Cyclopropane-fatty-acyl-phospholipid synthase Cphamn1_1185 1278357 - 1277398 - | aldo/keto reductase Cphamn1_1186 1280058 - 1278457 - | peptide chain release factor 3 Cphamn1_1187 1280293 - 1281939 + | phosphoglucomutase, alpha-D-glucose phosphate-specific Cphamn1_1188 1282162 - 1282731 + | Inorganic diphosphatase Cphamn1_1189 1282822 - 1284222 + | fumarate hydratase, class II Cphamn1_1190 1284398 - 1285291 + | protein of unknown function DUF344 TERM 1325 1285494 - 1285514 + F 87 -6.1 -5.24129 | overlap 1285499 GCGTCGTAAAACGGG TAAGCCAGG AGA CCTGTCTTG TTTTTTATCCGGAAG TERM 1326 1286504 - 1286517 + G 74 -8.1 -4.0896 | opp_overlap 1286513 TTCAATATGAATGTG CCGAC GAGA GTCGG TTTTCAGACGCCTTT TERM 1327 1286806 - 1286791 - g 70 -9 -3.63068 | opp_overlap 1286791 GGAGATGACGGCAAA GTACGG CATA CCGTAC TTCTCGAATTTTGTG Cphamn1_1191 1285700 - 1287892 + | anaerobic ribonucleoside-triphosphate reductase Cphamn1_1192 1287889 - 1288656 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 1328 1288686 - 1288710 + T 100 -8.6 -5.67967 | overlap 1288687 TTTTTCTCCGTTCAA TCTGCCTTGT TATCT GCAAGGCAGG TTTTTTTATGGTGAT TERM 1329 1288687 - 1288709 + T 81 -9.9 -3.99153 | overlap 1288686 TTTTCTCCGTTCAAT CTGCCTTGT TATCT GCAAGGCAG GTTTTTTTATGGTGA Cphamn1_1193 1289567 - 1288716 - | modD protein TERM 1330 1288972 - 1288991 + g 93 -3.6 -5.75342 | ATAGCGTCAGTGAGG GTTTCC ACTTCCAC GGAAAC TTTTTTTTCCGGACA Cphamn1_1194 1290365 - 1290883 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Cphamn1_1195 1291053 - 1292939 + | heat shock protein Hsp90 Cphamn1_1196 1292993 - 1293850 + | protein of unknown function DUF125 transmembrane Cphamn1_1197 1295439 - 1293847 - | hypothetical protein TERM 1331 1294952 - 1294995 + g 93 -16 -3.16564 | gap 1 GGCTTGATGAGGATC TCCGC-CCTGCCGTAAGCGCT GTC AGGGCCTGCGGCGGGAGCGGA TTCATGGAATGCGGA Cphamn1_1198 1295629 - 1296096 + | UspA domain protein Cphamn1_1199 1296141 - 1296413 + | sodium pump decarboxylase, gamma subunit TERM 1332 1296605 - 1296648 + G 73 -5.4 -4.72272 | gap 1, opp_overlap 1296610 1296618, overlap 1296609 1296610 1296619 GTTGACGCGGGCACT GATAA-CTTTGAAATCGGGGG AGG CGCCCGTTTTCAAAGCTTGTA TTTTTACTGCCAGGA TERM 1333 1296609 - 1296643 + G 80 -10 -4.11027 | opp_overlap 1296610 1296618, overlap 1296605 1296610 1296619 ACGCGGGCACTGATA ACTTTGAAATCGGGGG AGG CGCCCGTTTTCAAAGC TTGTATTTTTACTGC TERM 1334 1296610 - 1296642 + G 81 -13.5 -3.05531 | opp_overlap 1296610 1296618, overlap 1296609 1296605 1296619 CGCGGGCACTGATAA CTTTGAAATCGGGGG AGG CGCCCGTTTTCAAAG CTTGTATTTTTACTG TERM 1335 1296642 - 1296610 - g 84 -13.5 -3.35679 | opp_overlap 1296610 1296609 1296605 1296619, overlap 1296618 CGCGGGCACTGATAA CTTTGAAATCGGGGG AGG CGCCCGTTTTCAAAG CTTGTATTTTTACTG Cphamn1_1200 1296485 - 1298314 + | biotin/lipoyl attachment domain-containing protein Cphamn1_1201 1298458 - 1300008 + | sodium ion-translocating decarboxylase, beta subunit TERM 1336 1300039 - 1300016 - T 100 -13.2 -4.8622 | gap 1, opp_overlap 1300016 TCCTGTAAGCAAAAA GGCAGGG-CAC TGT GTGACCCTGCC TTTTTGCTATCCAGC TERM 1337 1300016 - 1300039 + T 100 -13.2 -4.8048 | gap 1, opp_overlap 1300016 TCCTGTAAGCAAAAA GGCAGGG-CAC TGT GTGACCCTGCC TTTTTGCTATCCAGC TERM 1338 1300051 - 1300064 + T 77 -2.3 -5.42198 | TGCCTTTTTGCTATC CAGCT ATCC AGCAG TTTTATTTTTTCAAG Cphamn1_1202 1301266 - 1300067 - | internalin-related protein TERM 1339 1300745 - 1300759 + g 71 -5.6 -4.56775 | overlap 1300747 GGGAGATTCGTCACA CCGCAG TTG CTGCAG TTTTTCGAGCACCCT TERM 1340 1300867 - 1300836 - G 74 -7.4 -4.23213 | gap 1, opp_overlap 1300836 TTGACAGTGAAGAAA TCCAGCAACTCCT GGTCTGA AGG-GTCGCTGGA TGACTTAATGGTGTT TERM 1341 1303967 - 1303951 - g 70 -4.3 -4.72986 | opp_overlap 1303959, overlap 1303952 GATTGTGATGAAAAA CCTTCGC ATA GCGCAGA TTGCGCCGCTTATTG Cphamn1_1203 1301560 - 1303983 + | Kojibiose phosphorylase Cphamn1_1204 1303943 - 1305031 + | glycosyl transferase group 1 TERM 1342 1307804 - 1307816 + F 77 -4.9 -4.98531 | opp_overlap 1307804 ATTTTGCGCAAGAAG GATTT TAT AAATC TTTTTGATTTGACAG TERM 1343 1308713 - 1308727 + F 86 -3.6 -5.59655 | GTTAAAATTGCCGGG TAGCTT TAA AAGTTA TTTTTTATTACTTTC Cphamn1_1206 1308806 - 1309135 + | thioredoxin TERM 1344 1309149 - 1309166 + F 93 -10.5 -5.09895 | GAGCAAAAGCTGAAG CCGGGGT TTCC GCCCCGG TTTTTTCCCTGACTG TERM 1345 1309558 - 1309534 - g 71 -10.7 -3.04144 | CGTTTATCTTGAAGA CGGCCGGGAAA TTC TTTCCCGGACA CTGATCGTCGCCACA Cphamn1_1207 1309235 - 1310170 + | thioredoxin reductase TERM 1346 1311224 - 1311243 + F 79 -7.9 -4.36914 | TCGGTTTCCATGACC TGCATCG CCAGCC CGATGCA TTTTCTCAGAGCAGG TERM 1347 1311357 - 1311379 + F 71 -4.8 -4.58685 | opp_overlap 1311374, overlap 1311358 CCGAAAGCGCATTAC TGACCGTTAT TTC AAGACGGTCG TTTTTAACCGGCTTT Cphamn1_1209 1311817 - 1311930 + | hypothetical protein Cphamn1_1210 1311970 - 1312188 + | hypothetical protein TERM 1348 1312477 - 1312496 + T 100 -12.2 -4.93661 | ATGCAGGGTATGTAG GGGCGAAA AAAT TTTCGCCC TTTTCTTATTGATCT Cphamn1_1211 1313545 - 1312649 - | hypothetical protein TERM 1349 1313609 - 1313619 + H 80 -5.4 -5.04175 | GGGCGTATAAAGACG GGAA ACT TTCC TTTTTCTGTCATTCC Cphamn1_1212 1314286 - 1314654 + | hypothetical protein Cphamn1_1213 1315294 - 1314644 - | tRNA guanosine-2'-O-methyltransferase TERM 1350 1314893 - 1314906 + g 70 -8.1 -3.71848 | GTGTATGCAGTGATC CGCTC CGGA GAGCG TTGTTGCTGAAGGAC TERM 1351 1316314 - 1316292 - g 71 -6.3 -4.4204 | gap 1, overlap 1316285 1316288 AACAACTACAAGAAA CTCGACGCCC GGGG AGGCGT-GAG ATTCGCAGGCCATGT TERM 1352 1317981 - 1317969 - g 71 -5.5 -4.44667 | overlap 1317952 CTGTTTAAGAATAAA CAGCA GCC CGCTG AAGATAGTGCGGCAG TERM 1353 1318032 - 1318021 - g 100 -5.8 -5.65496 | GAGGAAAAACAAAAA CAGG GTTG CCTG CGATTATCGGTAATA Cphamn1_1214 1315437 - 1318223 + | hypothetical protein TERM 1354 1318247 - 1318269 + F 71 -9.8 -3.01712 | opp_overlap 1318245 1318246 1318259 GGATCACCTGAAAGC CCTGCTTCAG AAC CGGAGGCAGG TGTTGAGGAGACAGG Cphamn1_1215 1318375 - 1319454 + | metallophosphoesterase TERM 1355 1320454 - 1320470 + G 78 -2.1 -5.243 | overlap 1320455 1320456 TCAGCGATTACGCGT CATCCCG GTA CGGGAAA TTTTTTGGTGCTTTC Cphamn1_1216 1319761 - 1320669 + | hypothetical protein TERM 1356 1321768 - 1321780 + G 74 -4.1 -4.95484 | overlap 1321764 GTTTCAATGACGATC TGGAC GAG GTCTA TTTTCTTTCATGGTC Cphamn1_1217 1320822 - 1323599 + | surface antigen (D15) TERM 1357 1323665 - 1323695 + F 93 -5.3 -5.54264 | overlap 1323667 1323668 TCTGATAGTTCTCTG TTTCCCCTCTGAG AGTGA CTCAGGGGGGCTG TTTTTTTACATGTTT TERM 1358 1323667 - 1323693 + F 87 -10.1 -4.38666 | overlap 1323665 1323668 TGATAGTTCTCTGTT TCCCCTCTGAG AGTGA CTCAGGGGGGC TGTTTTTTTACATGT TERM 1359 1323668 - 1323692 + F 93 -13.6 -3.21573 | overlap 1323667 1323665 GATAGTTCTCTGTTT CCCCTCTGAG AGTGA CTCAGGGGGG CTGTTTTTTTACATG Cphamn1_1218 1323743 - 1324840 + | putative adenylate/guanylate cyclase Cphamn1_1219 1326040 - 1324847 - | metal dependent phosphohydrolase Cphamn1_1220 1326312 - 1326118 - | hypothetical protein Cphamn1_1221 1326360 - 1327184 + | phosphoesterase PA-phosphatase related TERM 1360 1327176 - 1327200 + T 73 -10.1 -3.05343 | ATGCGGTTCTCGTTA CGTTTTTAGAG GTG CCCTAAAAACG TATTGCGCGTCTCGA Cphamn1_1222 1327922 - 1327260 - | HAD-superfamily hydrolase, subfamily IA, variant 1 TERM 1361 1327315 - 1327334 + g 80 -3.4 -5.32944 | overlap 1327317 TCGACCAGTTTTTTT GCGCCGCT TTCC AGCAGCTC TTTTTTCGTTCTGAA Cphamn1_1223 1328578 - 1327919 - | Methyltransferase type 12 TERM 1362 1328275 - 1328325 + g 71 -6.1 -4.35524 | opp_overlap 1328293, overlap 1328290 1328293 CGTTATCAGGTTCTG TGAGAATATCGCAGACAAGCGCT TCGAT AGCGCATGTTTGCCGCGCTCTCA TTTTCGCTTTCAGGG Cphamn1_1224 1330092 - 1328635 - | hypothetical protein TERM 1363 1329833 - 1329869 + g 71 -6.5 -4.21194 | opp_overlap 1329822 1329823 1329817 1329832, overlap 1329824 AAAAGCGCGACAAGT TGCTTGCGCTTTTCCGG GTT CGGGAAAACCCCCAGCA TTTTCCGTACTACCG Cphamn1_1225 1330575 - 1331426 + | phospholipid/glycerol acyltransferase Cphamn1_1226 1331414 - 1332073 + | hypothetical protein TERM 1364 1332353 - 1332336 - g 95 -6.3 -5.5112 | opp_overlap 1332351 GTCATCAACAAAAAA GGAAAAG TCAT CTTTCCC GACGATCACTATCGT Cphamn1_1227 1332141 - 1332392 + | hypothetical protein Cphamn1_1228 1332565 - 1333668 + | hypothetical protein TERM 1365 1333747 - 1333779 + F 100 -13.6 -4.56597 | TCATCATGTTTACCG TTACCGCTCTTTCT CTGTA AGGAGGAGCGGTAA TTTTTAGGAAGAACC TERM 1366 1334424 - 1334403 - g 71 -6.5 -4.18197 | gap 1, opp_overlap 1334409 ATGGCGCAGTGAAAA GCC-GCGTGG CAT CCACTCCGGC AGCCATCGGTTTCAT Cphamn1_1229 1333844 - 1334659 + | phosphate binding protein TERM 1367 1334692 - 1334729 + F 100 -15.6 -4.31379 | opp_overlap 1334678 1334682 ACAACGGCATCTGCA GCTGTGGAAGCCACCC CTAAAA GGGTGGCTTCTGCTGC TTTTGATACATTCGT Cphamn1_1230 1334784 - 1336010 + | ABC-type phosphate transport system periplasmic component-like protein TERM 1368 1336040 - 1336085 + F 100 -12.9 -5.52096 | gap 1, opp_overlap 1336053 GAGTGTGAGTGCTTG TGATGATAAAAAAGCCGGTTGA GTT TTTGCCGGCTTTTTTATC-TCA TTTTTTCTTCCGTTT TERM 1369 1336073 - 1336053 - f 76 -2.5 -5.31275 | opp_overlap 1336040 TGTGATGATAAAAAA GCCGG TTGAGTTTTTG CCGGC TTTTTTATCTCATTT TERM 1370 1336894 - 1336904 + G 78 -2.4 -5.28683 | CATCCCGTGTTTCAC AGCG AAC CGCA TTTTTTCATCTTGGT Cphamn1_1231 1336164 - 1337009 + | phosphate ABC transporter, ATPase subunit TERM 1371 1337633 - 1337643 + G 74 -2.4 -5.08255 | TTTTTTCAGCAGATT CCGG TCA CCGA TTTTCTTTTCGGCCT Cphamn1_1232 1337033 - 1338421 + | phosphate ABC transporter, inner membrane subunit PstC TERM 1372 1339606 - 1339618 + G 71 -6.2 -4.36914 | ATCTTTGGGCTGATA GCCC CGAAC GGGC TTTTGTGGAGCGGAC Cphamn1_1233 1338414 - 1339724 + | phosphate ABC transporter, inner membrane subunit PstA TERM 1373 1340276 - 1340288 + G 91 -5.5 -5.48303 | TGGCCGCTATTCCTT CCGTG GCA TACGG TTTTTTTGCGCTTGT Cphamn1_1234 1339858 - 1341021 + | phosphate ABC transporter, inner membrane subunit PstC Cphamn1_1235 1341046 - 1342392 + | phosphate ABC transporter, inner membrane subunit PstA Cphamn1_1236 1342398 - 1343258 + | phosphate ABC transporter, ATPase subunit Cphamn1_1237 1343291 - 1343977 + | phosphate uptake regulator, PhoU TERM 1374 1343986 - 1344025 + F 100 -10.9 -5.80364 | opp_overlap 1343991 AGATTAGCTTCCTGT TAAAACCCGTCGTCA GAGAGTGAAA TGCCGACGGGTTTTA TTTTTTTCTTGCAAT Cphamn1_1238 1344227 - 1344982 + | phosphate uptake regulator, PhoU TERM 1375 1345020 - 1345037 + F 100 -7.7 -6.15259 | opp_overlap 1345020 AGACCGTTATGAAAA GGCGAAT GACA GTTCGCC TTTTTTTTTAGCTTG TERM 1376 1345037 - 1345020 - f 72 -7 -4.26344 | opp_overlap 1345020 AGACCGTTATGAAAA GGCGAA TGACAG TTCGCC TTTTTTTTTAGCTTG Cphamn1_1239 1345133 - 1345540 + | hypothetical protein TERM 1377 1346318 - 1346332 + G 83 -2.8 -5.40072 | overlap 1346309 CCTTGTCGGCTTTGC CCGT TATCTGT ACGG TTTTTTTGCCAGGCA Cphamn1_1240 1345527 - 1346828 + | hypothetical protein Cphamn1_1241 1346825 - 1348063 + | pentapeptide repeat protein TERM 1378 1348918 - 1348936 + G 79 -11.8 -3.3353 | opp_overlap 1348916 1348915, overlap 1348917 1348916 CATCGGAGAAGAGCT TCGAGATC ACC GATCTCGA TATGTTTATCGGAAA Cphamn1_1242 1348179 - 1349042 + | glycosyl transferase family 2 Cphamn1_1243 1349295 - 1349558 + | hypothetical protein TERM 1379 1350152 - 1350170 + G 77 -10.2 -3.54424 | AGGAGGCGCTCATGC CCAGGTCG CGG CGACCGGG TTTGACACCATCAGA Cphamn1_1244 1349607 - 1350881 + | hypothetical protein TERM 1380 1351170 - 1351189 + F 100 -12.2 -5.85737 | ATACAGGGTTTGTAG GGGCGAAA AATA TTTCGCCC TTTTTTTGTTGATCT Cphamn1_1245 1351319 - 1351648 + | hypothetical protein TERM 1381 1352144 - 1352134 - gf 74 -5.4 -4.72333 | overlap 1352124 AACCAGATTGAAAAA TCTC AGC GAGA CCGATAAAGTGCGTG Cphamn1_1246 1351658 - 1352539 + | DNA methylase N-4/N-6 domain protein TERM 1382 1352785 - 1352804 + GF 71 -8.6 -3.53012 | opp_overlap 1352779 1352778, overlap 1352778 GAAGGAAATCCGGTA TTCCGGGT ATTG ACCTGGAA TTTGACAAAGGCAGC TERM 1383 1352898 - 1352884 - gf 76 -5.8 -4.64766 | opp_overlap 1352870, overlap 1352869 1352889 GTCAGATTGCAAAAA TGAAAT CTG ATTTCA GAACAGCTGCAAAAA TERM 1384 1353118 - 1353104 - gf 100 -8.6 -5.80817 | GGCAAGAGAAAAAAA TGCTGA ATT TCAGCA GTCCTACTCCCAGAT Cphamn1_1247 1352499 - 1353254 + | conserved hypothetical cytosolic protein Cphamn1_1248 1354561 - 1354740 + | hypothetical protein Cphamn1_1249 1354785 - 1355318 + | hypothetical protein TERM 1385 1356558 - 1356581 + G 76 -4.5 -4.95484 | CTGAAACCAGCTAAT CTGCTCTAC AACGGC GGAGGGCAG TTTTATTTCCTCGTG Cphamn1_1250 1355547 - 1358099 + | CRISPR-associated protein, Csm1 family Cphamn1_1251 1358734 - 1358117 - | transposase Cphamn1_1252 1359249 - 1358776 - | transposase Cphamn1_1253 1359334 - 1359759 + | CRISPR-associated protein, Csm2 family TERM 1386 1359894 - 1359883 - g 71 -5.8 -4.28361 | TGAATGTCATCAAAA CTCC TGGG GGAG TGCCGTTTATTCCCG Cphamn1_1254 1359762 - 1360496 + | CRISPR-associated RAMP protein, Csm3 family TERM 1387 1361155 - 1361137 - g 73 -8.8 -3.73647 | TTGACCTACGAAGAA CGGCAGGA ATT TCTTGCCG CACTGCGAATCATGG TERM 1388 1361192 - 1361168 - g 71 -11.4 -2.72344 | opp_overlap 1361166 1361166 CCGCACTGCGAATCA TGGCCGACGA GGGTG TCGGCGGCCA GCGTTCTTCCGGCAA Cphamn1_1255 1360507 - 1361523 + | CRISPR-associated RAMP protein, Csm4 family Cphamn1_1256 1361532 - 1362674 + | CRISPR-associated RAMP protein, Csm5 family TERM 1389 1362760 - 1362748 - g 79 -9.1 -4.20783 | AGCCTACTGAAGAAA TCCGG TTG CCGGA GTACAAGGGCTCAGC TERM 1390 1362989 - 1363002 + G 74 -3.7 -5.01422 | TCAGGGATATTTTGA GCCGG GCGA CAGGC TTTCTTTTTCTCTCG Cphamn1_1257 1362681 - 1363679 + | conserved hypothetical cytosolic protein TERM 1391 1363910 - 1363926 + T 84 -4.3 -5.40072 | overlap 1363911 ATAAAGGGGATTGAG ACCTGGA CTT TCCGGGA TTTTTTTCAGCACAG TERM 1392 1363911 - 1363925 + T 71 -7.8 -3.83561 | overlap 1363910 TAAAGGGGATTGAGA CCTGGA CTT TCCGGG ATTTTTTTCAGCACA TERM 1393 1364553 - 1364570 + T 100 -9.9 -5.85737 | TGCAGGGTATGTAGG GGCGAAA AATC TTTCGCC TTTTTTTATTGATCT Cphamn1_1258 1366269 - 1364863 - | transposase IS4 family protein Cphamn1_1259 1367018 - 1367230 + | hypothetical protein Cphamn1_1260 1367211 - 1367507 + | hypothetical protein TERM 1394 1367957 - 1367976 + T 87 -8.6 -4.46212 | ATGCAGGGTTTGTAG GGGTGAAA AATT TTTCGCCC TTTTGTGCTCAGGGA Cphamn1_1261 1368472 - 1368170 - | hypothetical protein TERM 1395 1368485 - 1368521 + r 71 -5.1 -4.58685 | overlap 1368477 1368486 1368497 CATTTTTTATCTCCC AGATATTGTCGGGTCGC TTT GCGACTTGGTACTATCG TTTTTAGAAAAATTT Cphamn1_1262 1368747 - 1368469 - | hypothetical protein TERM 1396 1368692 - 1368672 - G 78 -4.1 -5.09225 | opp_overlap 1368675 1368677, overlap 1368675 1368677 ACTGCATCGAAAAAA GAATTTCTT TGA AAGAAATTT TTCTTTCAGTGATAA TERM 1397 1368675 - 1368689 + g 90 -5.8 -5.30616 | opp_overlap 1368672 1368675 1368677, overlap 1368677 GCATCGAAAAAAGAA TTTCTT TGA AAGAAA TTTTTCTTTCAGTGA TERM 1398 1368689 - 1368675 - G 76 -5.8 -4.64763 | opp_overlap 1368675 1368677, overlap 1368672 1368677 GCATCGAAAAAAGAA TTTCTT TGA AAGAAA TTTTTCTTTCAGTGA TERM 1399 1368807 - 1368819 + H 85 -7.7 -4.614 | opp_overlap 1368806, overlap 1368803 AAAGCGCACAAGGAC GGGAA ACG TTCCC TTTTCTGTCATTCCC TERM 1400 1368880 - 1368898 + H 74 -11 -2.64155 | overlap 1368877 1368877 CGGGATTTGCATGGA TGCCGGAT CAA GTCCGGCA TGACTTTCCGGAGGG TERM 1401 1369227 - 1369247 + H 77 -11.2 -2.75473 | overlap 1369222 CCCTCTCTCTTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTTATATT TERM 1402 1370993 - 1370981 - g 79 -9.1 -4.18018 | GTTTTCTACGGAAAA CAGGG AGG CCCTG CTCGCTCTGGAACAT TERM 1403 1371491 - 1371478 - g 70 -8.1 -3.69068 | CGACGGCAAGAAAGA GGCTC GAAG GAGCC GATATCAAAGCGCTT TERM 1404 1371511 - 1371501 - g 72 -8.2 -3.83998 | GGAGCCGATATCAAA GCGC TTC GCGC CCTTGATGAAGTAGA TERM 1405 1373126 - 1373116 - g 79 -6.8 -4.65895 | opp_overlap 1373102 TGCTGCAGCGAAAAA GAGC TGC GCTC CTTGACGCGAAAGAG Cphamn1_1263 1369716 - 1373324 + | FAD linked oxidase domain protein Cphamn1_1264 1373392 - 1373496 + | hypothetical protein Cphamn1_1265 1373489 - 1373749 + | hypothetical protein TERM 1406 1373785 - 1373800 + F 100 -11.8 -6.02914 | TGTATGAAGTTCACG GCCCGC GTAA GCGGGC TTTTTTTTGTCTGGA Cphamn1_1266 1373835 - 1375550 + | Radical SAM domain protein TERM 1407 1376862 - 1376844 - g 70 -8.9 -3.61398 | TTGTCTGGGCAAGAA TCCCTGA GCCGT TCAGGGA ACGTGGCAGTCTCGA Cphamn1_1267 1375832 - 1377046 + | aminotransferase class I and II Cphamn1_1268 1377037 - 1377618 + | hypothetical protein Cphamn1_1269 1379315 - 1378005 - | phosphatidylserine decarboxylase-related TERM 1408 1378761 - 1378779 + g 70 -11 -2.57423 | opp_overlap 1378764, overlap 1378757 TGCGTCCCGGCCGAA CCATCCTG TTT CGGGATGG TCAGTTAGTACATAT TERM 1409 1378891 - 1378877 - G 100 -7 -5.47218 | TTGGATTCAAAAAAA CGGTCG TCC CGGCCG GAGTTGCCATGGGCC Cphamn1_1270 1379685 - 1379801 + | hypothetical protein Cphamn1_1271 1380044 - 1380229 + | hypothetical protein TERM 1410 1380265 - 1380304 + T 100 -25.2 -3.64703 | opp_overlap 1380275 CTCGGTTCCAGCCTT TCGGCAGCAATGCCGCTG GTTT CACCGGCATTGCTGCCGA TTTGCATAAGGGGGA Cphamn1_1272 1382036 - 1380444 - | carbohydrate kinase, YjeF related protein Cphamn1_1273 1384328 - 1382043 - | phosphoribosylformylglycinamidine synthase II TERM 1411 1382714 - 1382728 + g 74 -11.4 -3.03771 | AGAAACTGACATTGC CTCCGG TGA CCGGAG TGTTGAACGCTCTGC TERM 1412 1384079 - 1384059 - G 70 -8.3 -3.6715 | GGATTCAATTTTAAA GGCGACA GCAAGAT TGTCGCC GATATCGACCAGTCC TERM 1413 1384404 - 1384415 + r 77 -2.2 -5.44837 | CCTCTGTGCTGTTAC TTGC CGCA GCAG TTTTTGTATTTTTTT Cphamn1_1274 1387489 - 1384400 - | preprotein translocase, SecA subunit TERM 1414 1384562 - 1384574 + g 79 -9.1 -4.25104 | TCCGGAATTTTCATA GGCTG TTT CAGCC TTTTCATGACGCGCG TERM 1415 1385083 - 1385119 + g 78 -3.7 -5.14563 | opp_overlap 1385084, overlap 1385084 CGGTGTTTTCCGAAT AGTCATGCAGCAGGT CAAAAAT ATCTGCTGTAAGACG TTTTTTCGTGAGGGC TERM 1416 1385868 - 1385842 - G 71 -5.8 -4.323 | TGTAAATATCGAAAA GCTCAGCTGA TTCGGTT TCAGCCGTGC CTGTCATACCTGAGA TERM 1417 1386559 - 1386572 + g 74 -3.8 -5.00884 | CAAGATACCCTGCAA CCAG ATTCTG CTGG TTTTTTACCAGGCGT TERM 1418 1387074 - 1387123 + g 79 -11.4 -3.62591 | overlap 1387120 AGCTGGACGTCATAG GGGATCATGTCCCAGGTCATGG TATGAT CCATGACCTGGTAGGTGTGCCC TTTGAGCCTTCTGCA TERM 1419 1388044 - 1388063 + G 80 -2.1 -5.41143 | GATTGTCAACCCTAC GGAAGTT CCTTTT AACTACC TTTTTTTGAACGATG Cphamn1_1275 1387853 - 1388914 + | phosphoesterase RecJ domain protein TERM 1420 1389155 - 1389167 + F 82 -6.9 -4.90381 | GATTTCAAGGGTAAT GCGGG TGA CTCGC TTTTGTTGTATTCAG TERM 1421 1389822 - 1389801 - f 70 -10.1 -2.53876 | opp_overlap 1389799 CGGCACCTCAAGCCA CCGTTGCCC TTGT GGGCAAGGG GGTGACTTTTGATTC TERM 1422 1389915 - 1389935 + F 95 -12.5 -3.69338 | CTGCGGCTGTAATCG GTGCCGTCG AGG CGGCGGCGC TTCTTGAACTTCCTT TERM 1423 1390636 - 1390610 - g 80 -4.4 -5.14965 | gap 1 ACGGGGATGAAAAAA GCTCTCTCGGC CTATCT GCCT-GAGAGC ATGATAGAAATTGTC Cphamn1_1277 1390529 - 1391233 + | hypothetical protein Cphamn1_1278 1391215 - 1392066 + | hypothetical protein Cphamn1_1279 1393388 - 1392063 - | sodium:dicarboxylate symporter TERM 1424 1392444 - 1392456 + g 80 -4.7 -5.0916 | opp_overlap 1392432 AAAGCCGGCGGTACG CGGCG AAA CCCCG TTTTTCTCTTCCGCG TERM 1425 1392961 - 1392990 + g 73 -10.7 -3.29043 | overlap 1392962 TCGGTTATCTCTCTT TCCTCCTGCAGAA ACCG TTCCGCAGGAGGC TTGTCGACCGCGATT TERM 1426 1392962 - 1392989 + g 81 -14.2 -2.57211 | overlap 1392961 CGGTTATCTCTCTTT CCTCCTGCAGAA ACCG TTCCGCAGGAGG CTTGTCGACCGCGAT TERM 1427 1393729 - 1393739 + H 80 -5.4 -5.04175 | GGGCGTACAAAGACG GGAA ACT TTCC TTTTTCTGTCATTCC TERM 1428 1394593 - 1394577 - g 73 -8.7 -3.73224 | opp_overlap 1394557, overlap 1394557 TGATGTCGTATCAAA CCCTGAG TTT CTCAAGG AAGGGGATGCCGTGA Cphamn1_1280 1394122 - 1395459 + | nucleotide sugar dehydrogenase Cphamn1_1281 1396284 - 1395463 - | phosphomethylpyrimidine kinase Cphamn1_1282 1396892 - 1396272 - | thiamine-phosphate pyrophosphorylase Cphamn1_1283 1397527 - 1396889 - | Thiamine-phosphate diphosphorylase Cphamn1_1284 1397622 - 1397524 - | hypothetical protein Cphamn1_1285 1397800 - 1398270 + | Endoribonuclease L-PSP Cphamn1_1286 1398760 - 1398254 - | protein of unknown function DUF192 TERM 1429 1398332 - 1398316 - G 76 -6.5 -4.46112 | opp_overlap 1398316 1398315 1398319 TGGTATCGAAATAAA CGGTATC GCC GATCCCG ATATTATGCTGTTTA TERM 1430 1400476 - 1400490 + G 84 -4.2 -5.28176 | opp_overlap 1400476 GTGTTACGGTATACA GGCC AAAAGAA GGCC TTTTTTCTGAATCAG Cphamn1_1287 1399293 - 1400900 + | carboxyl-terminal protease Cphamn1_1288 1400966 - 1401628 + | cyclase/dehydrase Cphamn1_1289 1401707 - 1402324 + | hypothetical protein Cphamn1_1290 1403395 - 1402415 - | rfaE bifunctional protein Cphamn1_1291 1403707 - 1405056 + | signal recognition particle protein Cphamn1_1292 1405093 - 1405497 + | ribosomal protein S16 Cphamn1_1293 1405506 - 1406015 + | 16S rRNA processing protein RimM TERM 1431 1406175 - 1406189 + G 76 -2.8 -5.08824 | CGTATAGATGTCATT TCCG TCATTCC CGGA TTTTTTGACTCACCA Cphamn1_1294 1406148 - 1406861 + | tRNA (guanine-N1)-methyltransferase Cphamn1_1295 1406886 - 1407251 + | ribosomal protein L19 TERM 1432 1407325 - 1407308 - f 80 -6.9 -4.86621 | opp_overlap 1407308 AGTTGTAATGAAAAA GCCTGGC GTCG GTCAGGC TTTTTTAATTCAGCC TERM 1433 1407308 - 1407325 + F 100 -9.1 -5.26875 | opp_overlap 1407308 AGTTGTAATGAAAAA GCCTGGC GTCG GTCAGGC TTTTTTAATTCAGCC TERM 1434 1407698 - 1407673 - g 100 -13.3 -4.77567 | opp_overlap 1407671 1407668, overlap 1407675 ATCGTGACAACAAAA GGCGGTTTCCC TGGA GGGAAACCGTC GATCGTTATGCTGTT TERM 1435 1407696 - 1407675 - g 81 -14.5 -2.67008 | opp_overlap 1407671 1407668, overlap 1407673 CGTGACAACAAAAGG CGGTTTCCC TGGA GGGAAACCG TCGATCGTTATGCTG Cphamn1_1296 1407603 - 1408271 + | HhH-GPD family protein TERM 1436 1409047 - 1409024 - f 71 -9.6 -3.06492 | overlap 1409037 GGACGTACCGTAAGA GGGCAAGGAA GGAT TTCCTTGCCG TCGGCATGAAAAAGA TERM 1437 1409756 - 1409776 + F 91 -8.2 -5.30686 | CCTCGTGATGAACCT GGACCGGC TGCTC GCCGCTCC TTTTTTGTGCCTGTT Cphamn1_1298 1409931 - 1410065 + | hypothetical protein Cphamn1_1299 1411922 - 1410093 - | AMP-dependent synthetase and ligase TERM 1438 1412180 - 1412164 - R 88 -10.8 -4.258 | opp_overlap 1412164 TGATGGACGAATAAA GCCCGC GTTTT GCGGGC TTTTTGCTGAGGCGA TERM 1439 1412164 - 1412180 + r 100 -11.5 -4.72272 | opp_overlap 1412164 TGATGGACGAATAAA GCCCGCG TTT TGCGGGC TTTTTGCTGAGGCGA Cphamn1_1300 1413070 - 1412330 - | Cobyrinic acid ac-diamide synthase TERM 1440 1412728 - 1412744 + g 70 -8.1 -3.70039 | overlap 1412724 TATACGGGTATTCGG TATTCAG TTC CTGAATA TTGCTTTTAAGCTTT TERM 1441 1413013 - 1413024 + g 73 -5.8 -4.57073 | GGTAGGCCAGGTTGA CTGC GGAA GCAG TTTTTCCAACGCCTC Cphamn1_1301 1414635 - 1413067 - | CHAD domain containing protein TERM 1442 1413452 - 1413471 + g 76 -2.8 -5.13521 | gap 1, overlap 1413455 GCCTCAGGGCTGGTG GTTCTGCCG TGC CGG-AGTAC TTTTTTCCATGCTTT Cphamn1_1302 1414920 - 1415909 + | basic membrane lipoprotein TERM 1443 1416066 - 1416078 + G 91 -9.1 -4.81852 | opp_overlap 1416061 AAAAAATACTTGTAA CCGGT TCG ACCGG TTTTATTGGTTCTCG Cphamn1_1303 1416044 - 1417045 + | NAD-dependent epimerase/dehydratase TERM 1444 1417372 - 1417384 + G 76 -6.3 -4.62069 | GCTGCCCAGGTTGCC GAAGA GTC TCTTC TTTTTGAACTACCGG TERM 1445 1417811 - 1417837 + G 82 -12.5 -3.40403 | opp_overlap 1417817, overlap 1417817 ACACCATCAGTGACG GCAAAACCATA GCGGA TATGGTTTTGC TTATGGTGAAAACCA TERM 1446 1418552 - 1418573 + G 71 -6.7 -4.15044 | gap 1 TATTCTCGCTCATCG CCCA-AAATC GCG GATTTCTGGG TTTCTTCGCCAAAAA Cphamn1_1304 1417057 - 1419009 + | putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase TERM 1447 1419046 - 1419029 - g 100 -3.3 -6.34424 | opp_overlap 1419042, overlap 1419030 CTGGCAAAAAAAAAA GCGGCAC GCCG ATGCCGG AGGGGAGAGCTTCCG TERM 1448 1419045 - 1419030 - g 74 -6.8 -4.39028 | opp_overlap 1419042, overlap 1419029 TGGCAAAAAAAAAAG CGGCAC GCCG ATGCCG GAGGGGAGAGCTTCC Cphamn1_1305 1419002 - 1419700 + | DNA polymerase III, epsilon subunit Cphamn1_1306 1420943 - 1420158 - | Methyltransferase type 11 TERM 1449 1420803 - 1420815 + g 70 -3.3 -4.77173 | TATATCCTCCGGCGT CAGGG AGT CCATG TTTGTTTTCTGCAGG TERM 1450 1421022 - 1420992 - R 100 -11.9 -5.07486 | overlap 1420996 TATCCTGAAGAAAAA CAAAGAGCCGTGA TGTTC TCACGGCTCTCGG ACAGAATTCTATAGT TERM 1451 1421018 - 1420996 - R 100 -13.5 -5.05606 | overlap 1420992 CTGAAGAAAAACAAA GAGCCGTGA TGTTC TCACGGCTC TCGGACAGAATTCTA Cphamn1_1307 1421238 - 1421044 - | hypothetical protein TERM 1452 1421097 - 1421113 + g 80 -2.2 -5.47821 | TCTGGTCGTTTTCGC CGTTAG GAATA CGAACG TTTTTTTCCATGAAT TERM 1453 1421955 - 1421936 - g 74 -7.8 -4.18197 | opp_overlap 1421936 ATTGCCGATGGAAAA GCTGGCCA ACTA TCGCCAGC TTGTATCACCTGAAT Cphamn1_1308 1421571 - 1422863 + | Rhodanese domain protein TERM 1454 1423081 - 1423042 - g 70 -2 -5.00884 | gap 1, overlap 1423045 1423046 AGCTGTTTGAAAAAA TCACCCGT-CTCGTCGAGT ATT ACCCGTCGCGTACGGAAAA AGTCATTCTCGAAGA Cphamn1_1309 1422864 - 1423868 + | methyltransferase TERM 1455 1424831 - 1424818 - g 73 -5.3 -4.61162 | opp_overlap 1424818 AGATGAAAGAAGAAA TTCTC TATG GAGAA GTTGATCTCACGCTT Cphamn1_1310 1424010 - 1424945 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 1456 1425220 - 1425206 - g 83 -10 -4.25676 | AATGAAAGTGCAAAA GCTGAC AAA GTCAGC CATGGCGAAGAAAAA Cphamn1_1311 1425075 - 1425359 + | hypothetical protein Cphamn1_1312 1425728 - 1426078 + | hypothetical protein Cphamn1_1313 1426605 - 1426207 - | death-on-curing family protein Cphamn1_1314 1426823 - 1426602 - | transcriptional regulator/antitoxin, MazE TERM 1457 1426933 - 1426914 - R 70 -5.6 -4.42765 | overlap 1426916 GTTTAAAAAACCAAA GAGAGGCG TTTC CGCCCCTT GCAACACAGAAGAGT TERM 1458 1426931 - 1426916 - R 71 -8.2 -3.8049 | overlap 1426914 TTAAAAAACCAAAGA GAGGCG TTTC CGCCCC TTGCAACACAGAAGA Cphamn1_1315 1427455 - 1427144 - | hypothetical protein Cphamn1_1316 1427658 - 1427452 - | addiction module component, TIGR02574 family Cphamn1_1317 1429342 - 1428020 - | dihydroorotase, multifunctional complex type Cphamn1_1318 1430087 - 1429368 - | fumarylacetoacetate (FAA) hydrolase Cphamn1_1319 1430284 - 1430084 - | hypothetical protein TERM 1459 1430764 - 1430786 + G 74 -9.8 -3.53343 | CGAGGTGACCGATGG CAGGTTCGGG CAG CCTGAACCGG TTTCAGACAACGGTT Cphamn1_1320 1430459 - 1431043 + | 5-formyltetrahydrofolate cyclo-ligase TERM 1460 1431678 - 1431698 + G 80 -9.7 -4.10672 | CTACCGAGACTGCTT CGCCTCGAT ACT ATCGAGGGG TTTGATTTCGGTTCG Cphamn1_1321 1431069 - 1433198 + | Polyphosphate kinase Cphamn1_1322 1433206 - 1433634 + | sugar-phosphate isomerase, RpiB/LacA/LacB family Cphamn1_1323 1433771 - 1434454 + | putative signal transduction protein with CBS domains TERM 1461 1434750 - 1434736 - g 70 -4.2 -4.61566 | overlap 1434737 TCTTAAAGGAGAAAA GCAGGA TGG TCCTGA GAGAGGTCTTGTTGC TERM 1462 1434978 - 1434965 - g 86 -5.9 -5.06414 | CCTGCCGAAGAAAAA GCCCC CGGA GGAGC AAGCCCCCTGATCGA Cphamn1_1324 1434512 - 1435744 + | amidohydrolase TERM 1463 1435851 - 1435798 - T 82 -12.3 -2.75064 | opp_overlap 1435808, overlap 1435795 GTTTGTATTCAAGTA CTGGTTACTTGTCACAGGCCCCGGT CAGC ACCGGGGCCTGTGACTTGTTACTCT TTCAGCTACGCCTTG TERM 1464 1435808 - 1435841 + T 100 -26.9 -3.8613 | opp_overlap 1435798 1435795 AAGTACTGGTTACTT GTCACAGGCCCCGGT CAGC ACCGGGGCCTGTGAC TTGTTACTCTTTCAG Cphamn1_1325 1436981 - 1435857 - | fructose-1,6-bisphosphate aldolase, class II TERM 1465 1437393 - 1437377 - g 78 -2.2 -5.27023 | AGGCGAAAAAGAAAA TGCGGT TCATG ATCGCA CGGCTCGATACAGCC Cphamn1_1326 1437031 - 1439055 + | carboxyl-terminal protease Cphamn1_1327 1440543 - 1439143 - | argininosuccinate lyase TERM 1466 1439304 - 1439285 - G 70 -4.2 -4.59511 | overlap 1439286 AAGAGGTCGCAAAAA CCCCTGTA CTCT TCCAGGGA AATCTTCGGCAGGGA TERM 1467 1439446 - 1439456 + g 80 -3.2 -5.28481 | GTCTTCGCCGGTAAG GGTT TTC AGCC TTTTTTCGTTCAGTC Cphamn1_1328 1442207 - 1440747 - | hypothetical protein TERM 1468 1440909 - 1440923 + g 76 -4.2 -4.98672 | overlap 1440893 CGCGATCGAGTGTTC GAGCTG TGT CAGATC TTTTCTCTTTTTCAG Cphamn1_1329 1443252 - 1442185 - | hypothetical protein Cphamn1_1330 1444735 - 1443242 - | hypothetical protein TERM 1469 1443283 - 1443294 + g 89 -2.2 -5.73339 | TGAGAAGGTGTTCGA TGCT TTTC AGCG TTTTTTTATCGTTGT TERM 1470 1444892 - 1444855 - R 100 -20.1 -4.77896 | opp_overlap 1444860 1444891, overlap 1444860 GAAGGAAGGGAAAAA CAAAAGCCTCCGGAG TTTCCTGG CTCCGGAGGCTTTTG CTGTAACAGCATGTT TERM 1471 1444860 - 1444887 + r 100 -15.6 -4.34402 | opp_overlap 1444855 1444860 AAGGGAAAAACAAAA GCCTCCGGAGTT TCCT GGCTCCGGAGGC TTTTGCTGTAACAGC TERM 1472 1444887 - 1444860 - R 100 -14.2 -5.29885 | opp_overlap 1444860, overlap 1444855 AAGGGAAAAACAAAA GCCTCCGGAG TTTCCTGG CTCCGGAGGC TTTTGCTGTAACAGC Cphamn1_1331 1445840 - 1444914 - | hypothetical protein TERM 1473 1446004 - 1445969 - R 84 -8.3 -4.3534 | gap 1, overlap 1445970 1445972 TTCGAAGCATTAAAA CGACACAGCTCCGGCT GTGTA AACCGGGGCTGTG-CA TGAACGATATGTTGA TERM 1474 1446003 - 1445970 - R 72 -9.6 -3.20722 | gap 1, overlap 1445969 1445972 TCGAAGCATTAAAAC GACACAGCTCCGGCT GTGTA AACCGGGGCTGTG-C ATGAACGATATGTTG TERM 1475 1446002 - 1445972 - R 91 -13.3 -3.16033 | overlap 1445970 1445969 GAAGCATTAAAACGA CACAGCTCCGGCT GTGTA AACCGGGGCTGTG CATGAACGATATGTT Cphamn1_1332 1447515 - 1446307 - | Argininosuccinate synthase TERM 1476 1446989 - 1447000 + g 84 -4.4 -5.24129 | ATGTTTTCATCGATG GAGT AGGG ACTC TTTTTTGTGGCGGAA TERM 1477 1447365 - 1447378 + g 70 -2.4 -4.93454 | opp_overlap 1447365 CTCCCGTATCAAAAG CCTT TTGTTC AAGG TTTTCTATTTCTTTC Cphamn1_1333 1447974 - 1447528 - | arginine repressor, ArgR Cphamn1_1334 1449002 - 1447995 - | ornithine carbamoyltransferase Cphamn1_1335 1449941 - 1449024 - | acetylglutamate kinase Cphamn1_1336 1451250 - 1449970 - | arginine biosynthesis bifunctional protein ArgJ TERM 1478 1450073 - 1450091 + g 100 -3.8 -5.85178 | GTGAGAGTGATCGTG TACTCGTC CCG GCTGAGTA TTTTTTTTGCCTCTT Cphamn1_1337 1452555 - 1451539 - | N-acetyl-gamma-glutamyl-phosphate reductase Cphamn1_1338 1452797 - 1453729 + | phosphate-binding protein, putative TERM 1479 1453834 - 1453850 + G 70 -8.7 -3.60364 | overlap 1453827 1453833 CGATATCTGGTTTTC GCCGGAA TCC TTCTGGC TGTTCTTCTTCTGGC Cphamn1_1339 1453777 - 1455087 + | diguanylate cyclase Cphamn1_1340 1455125 - 1456390 + | protein of unknown function DUF214 TERM 1480 1457688 - 1457674 - g 70 -4.2 -4.62069 | opp_overlap 1457674 1457676, overlap 1457676 CTCGGACTTGAAAAA CCTCAG TTT CTGATG ATTTTTATACTTGAA Cphamn1_1341 1456708 - 1457967 + | protein of unknown function DUF214 TERM 1481 1457998 - 1457973 - T 100 -8.3 -5.64006 | gap 1, opp_overlap 1457973 AGCCAATTAAAAAAA GCGGCT-TGCCC TGA AGGCAGAACCGC TTTACATGAGTTACG Cphamn1_1342 1458221 - 1458057 - | Rubredoxin-type Fe(Cys)4 protein TERM 1482 1458276 - 1458299 + r 73 -6 -4.30576 | overlap 1458277 CGGAAAAGAACATCT ACCATGATCC AAAC GGATTATGGA TTTTCATAGTAAGAA TERM 1483 1458277 - 1458298 + r 72 -9.5 -3.18024 | overlap 1458276 GGAAAAGAACATCTA CCATGATCC AAAC GGATTATGG ATTTTCATAGTAAGA Cphamn1_1343 1458811 - 1458350 - | GCN5-related N-acetyltransferase TERM 1484 1458980 - 1458992 + H 85 -7.7 -4.614 | opp_overlap 1458979 AGTGCGTACAAGGAC GGGAA ACT TTCCC TTTTCTGTCATTCCC TERM 1485 1459003 - 1459023 + H 77 -11.2 -2.57795 | overlap 1458998 TTCCCTTTTCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTGCTGGTGCC Cphamn1_1344 1459194 - 1459679 + | Lipocalin family protein TERM 1486 1459704 - 1459716 + G 70 -2.7 -4.82901 | GATGCATTCTGGCTT TCATT AGG GATGA TTTTTGTCGCCGAGC Cphamn1_1345 1459686 - 1460324 + | protein of unknown function UPF0016 Cphamn1_1346 1462876 - 1460297 - | hypothetical protein TERM 1487 1460743 - 1460759 + g 83 -2.9 -5.44721 | CTTTAGCAAGTTCAC GCTTTTC CTT GCGAAGC TTTTTTTCAAGTCGT TERM 1488 1461034 - 1461046 + g 73 -6.2 -4.56775 | GTCCATGAATATTTT CCGG TGTTT CCGG TTTTTGAAGCAGCGT TERM 1489 1463276 - 1463292 + H 79 -5.1 -5.0666 | overlap 1463277 TGGACTGATATGCTA TGGGAGA TTC TCTCTCG TTTCTTTTTTAACTA Cphamn1_1347 1463365 - 1464033 + | ABC transporter-related protein Cphamn1_1348 1464030 - 1464824 + | hypothetical protein TERM 1490 1464998 - 1464978 - T 77 -11.2 -2.69073 | overlap 1464964 1464962 1464974 AGTCACAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGAGTGAGAGA Cphamn1_1349 1465897 - 1465049 - | prolipoprotein diacylglyceryl transferase TERM 1491 1465300 - 1465288 - G 74 -4.1 -4.93898 | AGAGTATCACAAAAA GAAAG ATG CCTTC AAAAAATGCTTCATA TERM 1492 1465571 - 1465555 - G 70 -10.9 -2.87468 | CGCCATGATAGGACA TTCCGGA AAT TCCGGAA AAACTGCAACTGCCT TERM 1493 1465859 - 1465846 - G 87 -8.1 -4.77122 | CGATAGAAAAAATAA CCGGA TCCA TCCGG GAGGGAAGTGTCTGC TERM 1494 1465992 - 1466012 + H 70 -5.5 -4.4078 | CATAAAAATCATTCT TTCTTGTCT TGG ACACAAGAA TTTTACTTGAAACCA TERM 1495 1466371 - 1466359 - g 90 -9.1 -4.63218 | opp_overlap 1466358 1466357 TGTTGGGTAAGAAAA TCGGC ACT GCCGA GATTCGTCAGGTAAT Cphamn1_1350 1466106 - 1467302 + | ATP-grasp domain protein Cphamn1_1351 1467363 - 1469195 + | ATP-citrate lyase/succinyl-CoA ligase TERM 1496 1469258 - 1469231 - f 100 -17.8 -4.21908 | opp_overlap 1469231, overlap 1469196 TACGATGACTTAAAA GCAGGAGCGGAT TTGA ACCCGCTCCTGC TTTTTTTATTATGTC TERM 1497 1469231 - 1469258 + F 100 -15.6 -5.9218 | opp_overlap 1469196 1469231 TACGATGACTTAAAA GCAGGAGCGGAT TTGA ACCCGCTCCTGC TTTTTTTATTATGTC TERM 1498 1469401 - 1469344 - f 100 -21.9 -3.1739 | overlap 1469348 1469381 ATATTATTGGATGAA TGGAGGGCCGCTGGAGAGCGGTGGAGC GGGA GCGAAACCGCTCTCCAGCGGCCCCTCT GAAAACCAACATATG TERM 1499 1469397 - 1469348 - f 100 -27.9 -2.56914 | overlap 1469344 1469381 TATTGGATGAATGGA GGGCCGCTGGAGAGCGGTGGAGC GGGA GCGAAACCGCTCTCCAGCGGCCC CTCTGAAAACCAACA Cphamn1_1353 1469943 - 1470641 + | hypothetical protein TERM 1500 1471262 - 1471289 + G 73 -10.6 -3.18912 | opp_overlap 1471244 1471258 1471257 AACACAGGAAGGTCG CCACTGCAAAGT AAAA GCATTGCAGTGG TTACTGACTCACTCG TERM 1501 1471365 - 1471346 - g 74 -7.8 -4.18018 | opp_overlap 1471358, overlap 1471358 GCGTGTGACGGAAAA CCGGGG AAAACACA CCCCGG GAGTTGATAACCAAA Cphamn1_1354 1471137 - 1472624 + | RNA-directed DNA polymerase Cphamn1_1355 1472635 - 1472973 + | integrase, catalytic region TERM 1502 1473099 - 1473118 + G 76 -3.4 -5.12971 | TGAGATATTGCGGAT CGCGGGCG CAAG CGTTGGCG TTTTTCTTGCGTATT TERM 1503 1473197 - 1473222 + G 83 -3.3 -5.40072 | gap 1, overlap 1473147 1473146 1473200 TCATAGGATCTGTTG CAGGGCTTTCGG CCA TTGAAGGC-CTG TTTTTTTCGAAAAAG TERM 1504 1473200 - 1473220 + G 71 -6.1 -4.34482 | overlap 1473147 1473146 1473197 TAGGATCTGTTGCAG GGCTTTCGG CCA TTGAAGGCC TGTTTTTTTCGAAAA Cphamn1_1356 1473067 - 1473531 + | hypothetical protein Cphamn1_1357 1474360 - 1473554 - | Acetolactate decarboxylase TERM 1505 1474116 - 1474103 - G 73 -5.3 -4.59773 | CTTGATCTGGAAAAA CTTTC CATC GAAAG CGATCATCTCGCCGT TERM 1506 1474525 - 1474547 + r 74 -6.9 -4.30559 | overlap 1474510 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_1358 1476103 - 1474706 - | hypothetical protein TERM 1507 1474772 - 1474786 + g 70 -8.6 -3.73072 | opp_overlap 1474772 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT TERM 1508 1476027 - 1476015 - G 77 -10.5 -3.6106 | GCGAAGACGCTCAAA CCGGC CCT GCCGG TGAGCTGGTCGTCGC TERM 1509 1476179 - 1476194 + H 100 -3.2 -5.7946 | AATATAACACTTTAC GCCC ATAGGTGA GGGC TTTTTTTATTGCAAA TERM 1510 1476922 - 1476897 - g 76 -6.8 -4.57837 | overlap 1476898 1476899 ATATTGTTGGAAAAA GCCTGCCGGA TTTGTC TCCGGCAGAA CAGCCCGACGGTTCT TERM 1511 1476921 - 1476898 - g 75 -10.3 -3.3422 | overlap 1476897 1476899 TATTGTTGGAAAAAG CCTGCCGGA TTTGTC TCCGGCAGA ACAGCCCGACGGTTC TERM 1512 1476920 - 1476899 - g 70 -11.6 -2.60211 | overlap 1476898 1476897 ATTGTTGGAAAAAGC CTGCCGGA TTTGTC TCCGGCAG AACAGCCCGACGGTT Cphamn1_1359 1476341 - 1477120 + | putative PAS/PAC sensor protein TERM 1513 1477479 - 1477458 - g 85 -3.7 -5.4505 | overlap 1477474 TTTCGTAACAAAAAA GAACCAGTA TCAG TAACGGTTC ATCCTGAACTGATGA Cphamn1_1360 1477284 - 1477622 + | hypothetical protein TERM 1514 1477813 - 1477782 - T 87 -6.6 -5.26875 | gap 1 GGCGTAACCAAAAAA GGCGAGCA-GCCTTT GGT AAAGACGTGACCGCC CGATAGTATCGCTTA Cphamn1_1361 1478601 - 1477879 - | transposase IS4 family protein Cphamn1_1362 1478997 - 1478758 - | hypothetical protein TERM 1515 1479482 - 1479464 - g 93 -8.8 -4.90778 | opp_overlap 1479468 1479469 GCTATGTAAAGAAAA TCGAGGCC GTA GGCCTTGA CTACAGCTCGCTTGC TERM 1516 1480776 - 1480758 - g 72 -9.6 -3.45768 | overlap 1480767 CATGACAACCTACAA GAGCATCA AGT CGATGCTC GACAACGGCCTGGAT Cphamn1_1363 1479349 - 1480872 + | Integrase catalytic region Cphamn1_1364 1480865 - 1481602 + | IstB domain protein ATP-binding protein Cphamn1_1365 1481817 - 1481960 + | hypothetical protein Cphamn1_1366 1482251 - 1482826 + | RNA polymerase, sigma-24 subunit, ECF subfamily Cphamn1_1367 1482798 - 1483289 + | putative transmembrane anti-sigma factor Cphamn1_1368 1483437 - 1483904 + | hypothetical protein TERM 1517 1483955 - 1483966 + T 100 -2.2 -6.11392 | GTCTTCCTGCAGGCC TTCC GGAT GGAG TTTTTTTATTTGTTT Cphamn1_1369 1484592 - 1483972 - | Carbonate dehydratase TERM 1518 1484473 - 1484456 - G 74 -11.3 -3.09327 | opp_overlap 1484459 1484468, overlap 1484468 TGATTTGACGGAACA CGGCTGT CAGA ACAGCCG ATCCACAGATATTCC Cphamn1_1370 1484977 - 1485843 + | lipoic acid synthetase Cphamn1_1371 1485870 - 1486430 + | hypothetical protein Cphamn1_1372 1486560 - 1487267 + | NAD-dependent epimerase/dehydratase Cphamn1_1373 1488400 - 1487543 - | short-chain dehydrogenase/reductase SDR Cphamn1_1374 1489619 - 1488552 - | ferredoxin TERM 1519 1489713 - 1489744 + r 100 -13.1 -3.76224 | opp_overlap 1489713, overlap 1489714 ATAACGAAAAAAAAA GCCGGTCAGGA ACGGTTTATC TCCTGACCGGC TTTGATGCCTGAAAC TERM 1520 1489744 - 1489713 - R 100 -13.8 -6.25242 | opp_overlap 1489713 1489714 ATAACGAAAAAAAAA GCCGGTCAGGAA CGGTTTAT CTCCTGACCGGC TTTGATGCCTGAAAC Cphamn1_1375 1489926 - 1489729 - | hypothetical protein TERM 1521 1491377 - 1491391 + G 70 -8.6 -3.75105 | TGACCGATGCGAACC TTCTGC TTG GCAGAA TTATTCCTGAATTCA TERM 1522 1493258 - 1493278 + G 75 -10.4 -3.48924 | opp_overlap 1493247 1493250 1493251 ACATCAACGCGCCCG CGGCGGTA ACGAC TGCCGCCG TTCTGTACACCCTGC Cphamn1_1376 1490275 - 1493979 + | 5-oxoprolinase (ATP-hydrolyzing) Cphamn1_1377 1494482 - 1493952 - | hypothetical protein TERM 1523 1494846 - 1494828 - g 73 -5.3 -4.71482 | gap 1, overlap 1494830 AGCAAACCGGAAAAA GC-CGATG TCAT CATCGTGC TCGGAGGAGATGACG Cphamn1_1378 1494711 - 1495301 + | protein of unknown function DUF218 Cphamn1_1379 1496415 - 1495342 - | NmrA family protein TERM 1524 1495591 - 1495606 + g 70 -4.7 -4.67234 | opp_overlap 1495591 GATAATAACGTCAAA CATGC GGATCG GCATG TTTTTGAACTTCGGT TERM 1525 1498045 - 1498021 - g 80 -2.2 -5.49809 | gap 1, opp_overlap 1498038, overlap 1498022 1498023 GAAACCTGAAAAAAA GCCTGAAAAGA TCTT TCTGTTCAG-C GGACATATGATCGAT Cphamn1_1380 1496633 - 1498579 + | Tetratricopeptide TPR_2 repeat protein TERM 1526 1498862 - 1498846 - g 91 -6.7 -5.10064 | overlap 1498840 TTGAAGACATAAAAA GTTTTTA CAC TAAAAAC GGTCGCGCCATGTTC TERM 1527 1499374 - 1499316 - g 71 -10.4 -3.18115 | gap 1, overlap 1499317 GTCGGAGAAAATAAT CTGCTTGTGGTCTCTGTTGGAACCGGC TATTGC GCCAATGCCAACAAAGACCTCAAGCC- GTCCGAGATGAACAT TERM 1528 1499374 - 1499317 - g 91 -16.4 -2.50387 | overlap 1499316 TCGGAGAAAATAATC TGCTTGTGGTCTCTGTTGGAACCGGC TATTGC GCCAATGCCAACAAAGACCTCAAGCC GTCCGAGATGAACAT Cphamn1_1381 1498602 - 1499735 + | Patatin TERM 1529 1499906 - 1499888 - T 86 -3.2 -5.52909 | overlap 1499890 TAAGAGGGAAAAAAA CATTAACT TAG AGTTAATT AGGGTTTGCTGAAGA TERM 1530 1499904 - 1499890 - T 70 -5.8 -4.38666 | overlap 1499888 AGAGGGAAAAAAACA TTAACT TAG AGTTAA TTAGGGTTTGCTGAA Cphamn1_1382 1501420 - 1499924 - | transposase, IS5 family, putative TERM 1531 1500053 - 1500033 - G 100 -8.2 -5.30686 | AACAGGCACAAAAAA GGAGCGGC GAGCA GCCGGTCC AGGTTCATCACGAGG Cphamn1_1383 1501587 - 1501817 + | hypothetical protein Cphamn1_1384 1501804 - 1502796 + | Radical SAM domain protein TERM 1532 1503729 - 1503715 - g 82 -7.8 -4.60797 | overlap 1503717 GCGGCACACAGAAAA TCGGCG TCA CGCCAA AAGGCAATGTGGGCC Cphamn1_1385 1502793 - 1504046 + | Radical SAM domain protein TERM 1533 1504259 - 1504229 - T 71 -9 -3.37796 | overlap 1504236 GGTCAGGAGGCACAA CATGACAGTGGTCT TCG AGACCACCCGCATG TACAAAGGCAGTATC TERM 1534 1504252 - 1504236 - T 75 -10.9 -2.94993 | overlap 1504229 AGGCACAACATGACA GTGGTCT TCG AGACCAC CCGCATGTACAAAGG Cphamn1_1387 1505850 - 1504369 - | aminoacyl-histidine dipeptidase Cphamn1_1388 1506057 - 1506281 + | hypothetical protein TERM 1535 1506303 - 1506330 + T 88 -9.2 -4.56597 | gap 1, opp_overlap 1506303 TTTCCATGAGAAAAA CCTTCCTG-CCAG ACG CTGCACAGGAAGG TTTTTCGGGAACAGC TERM 1536 1506330 - 1506303 - T 100 -11.4 -4.91109 | gap 1, opp_overlap 1506303 TTTCCATGAGAAAAA CCTTCCTGC-CAG ACG CTGCACAGGAAGG TTTTTCGGGAACAGC Cphamn1_1389 1506467 - 1506285 - | hypothetical protein Cphamn1_1390 1506703 - 1506530 - | hypothetical protein TERM 1537 1506669 - 1506688 + g 70 -4.2 -4.65263 | CCTTTAAGCATCTCC GGGTTCTG GCAG CAGCATCC TTTATTTTCAGACAT TERM 1538 1506795 - 1506769 - R 90 -12.4 -3.31799 | opp_overlap 1506777, overlap 1506759 1506773 1506777 CATAATGCTTCATAA TCAAGCAACTGC ATC GCAGTTACTCGA AACCTCTCAAGGGTA TERM 1539 1506791 - 1506773 - R 75 -9.6 -3.44325 | opp_overlap 1506777, overlap 1506759 1506769 1506777 ATGCTTCATAATCAA GCAACTGC ATC GCAGTTAC TCGAAACCTCTCAAG Cphamn1_1391 1507010 - 1506753 - | transcriptional regulator, ArsR family TERM 1540 1507098 - 1507123 + r 70 -7.5 -3.93664 | gap 1, opp_overlap 1507099, overlap 1507099 AAACGAACAAAAAAA ACCGCCTGTGCG TTA TGCAC-GGCGGC TTTACTCTATTGAAT TERM 1541 1507122 - 1507099 - R 100 -10.3 -6.15536 | gap 1, opp_overlap 1507098 1507099 AACGAACAAAAAAAA CCGCCTGTGC GTTAT GCAC-GGCGG CTTTACTCTATTGAA TERM 1542 1507099 - 1507122 + r 75 -11 -2.95475 | gap 1, opp_overlap 1507099, overlap 1507098 AACGAACAAAAAAAA CCGCCTGTGCG TTA TGCAC-GGCGG CTTTACTCTATTGAA Cphamn1_1392 1507424 - 1507155 - | RNP-1 like RNA-binding protein TERM 1543 1507303 - 1507291 - G 76 -6.3 -4.65916 | GGCATTTCAACAAAA CCAAA ACC TTTGG AACGGCCTGTGAATT Cphamn1_1393 1507744 - 1509231 + | hypothetical protein Cphamn1_1394 1509984 - 1509226 - | short-chain dehydrogenase/reductase SDR Cphamn1_1395 1510516 - 1510082 - | hypothetical protein Cphamn1_1396 1511918 - 1510575 - | Radical SAM domain protein Cphamn1_1397 1512938 - 1511919 - | hypothetical protein TERM 1544 1512066 - 1512039 - G 74 -8.3 -4.0162 | opp_overlap 1512065, overlap 1512035 CCGGGATACCATAAA CCGGCCGTTCG CAACGT CGAGCGTCCGG TTCAAAGGACCTTTG TERM 1545 1512369 - 1512347 - G 72 -9.8 -3.37901 | AAAGAGTCGAACCAA GGCAGCAATC GTC GTTTGCCGCC AATCCCGCCAACGTC TERM 1546 1512856 - 1512872 + g 84 -2.2 -5.60993 | TTCTTCATCTGTCCC GAACCG AGAGG CTGTTC TTTTTTTGTCAGCCC Cphamn1_1398 1514852 - 1513158 - | AMP-dependent synthetase and ligase Cphamn1_1399 1516337 - 1514985 - | Xanthine/uracil/vitamin C permease TERM 1547 1515108 - 1515096 - G 73 -3.4 -5.03715 | AGGATCGGTAAAAAA CATG GTTAT CATG ACCGGCGCGCGCGCA TERM 1548 1515672 - 1515658 - G 83 -2.8 -5.47399 | opp_overlap 1515658 GGAAGCGCAAAAAAA GGTG TCTGGCT CACC TTTGCCAGGCTCAGC Cphamn1_1400 1517404 - 1516478 - | Cache type 2 domain protein Cphamn1_1401 1517919 - 1517539 - | PilT protein domain protein Cphamn1_1402 1518122 - 1517916 - | transcriptional regulator, AbrB family TERM 1549 1519053 - 1519041 - g 79 -6.9 -4.61633 | overlap 1519031 ATAGACCCTCAAAAA GGCGC CGT ACGCC TGAGTCTGCGCCTGG Cphamn1_1403 1518504 - 1519136 + | hypothetical protein TERM 1550 1519184 - 1519137 - f 95 -13.4 -3.34236 | gap 1, opp_overlap 1519135, overlap 1519126 AAACCGACCTCATAA GACC-GCATGCGGGGAAGCTGCT GAA AACCGCTTCCCCGCTTCCCGGCC GCTCTTCGCCCCGAA Cphamn1_1404 1519465 - 1520769 + | radical SAM domain protein TERM 1551 1520805 - 1520838 + F 100 -10.4 -6.5058 | opp_overlap 1520805 TATCCATTTATAAAA GCCGTAACAGATCA TCAACC TGATTTGTAACGGC TTTTTTTTTATTTAT TERM 1552 1520838 - 1520805 - f 79 -8.2 -4.431 | opp_overlap 1520805 TATCCATTTATAAAA GCCGTAACAGATCA TCAACC TGATTTGTAACGGC TTTTTTTTTATTTAT TERM 1553 1521390 - 1521378 - g 76 -7.7 -4.41956 | ATACAGACATTAAAA TCCTG AGA CAGGA CCCGTTTGAAACCCT Cphamn1_1405 1521044 - 1521985 + | 8-oxoguanine DNA glycosylase domain protein Cphamn1_1406 1522008 - 1522841 + | peptidase M48 Ste24p Cphamn1_1407 1523093 - 1523980 + | NmrA family protein TERM 1554 1524687 - 1524707 + F 77 -11.2 -2.6952 | overlap 1524682 CTCCACTCCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGTCCTG TERM 1555 1524941 - 1524972 + G 70 -9.2 -3.60098 | opp_overlap 1524951 TGAAAACATTCTCAC CCGGGAAGCAGCGG AAAC CCGCAGCACCCTGG TTTCCAATACCAGCT TERM 1556 1525785 - 1525772 - g 72 -3.8 -4.82901 | CTTCCGTCATAAAAA GCTC TACAGC GAGC ACCTCAACCGCGCCA Cphamn1_1408 1524906 - 1527452 + | aminopeptidase N Cphamn1_1409 1527516 - 1528373 + | hypothetical protein Cphamn1_1410 1528669 - 1529196 + | Flavodoxin-like protein TERM 1557 1529234 - 1529261 + T 83 -6.2 -5.16237 | opp_overlap 1529237, overlap 1529236 1529237 CCAGTCTATCAATAA TAAGGCCGATGT TATC GCATCGGCCATC TTTTTTCCTCGACTT TERM 1558 1529236 - 1529259 + T 80 -8.8 -4.20707 | opp_overlap 1529237, overlap 1529234 1529237 AGTCTATCAATAATA AGGCCGATGT TATC GCATCGGCCA TCTTTTTTCCTCGAC TERM 1559 1529237 - 1529258 + T 83 -12.3 -3.11701 | opp_overlap 1529237, overlap 1529236 1529234 GTCTATCAATAATAA GGCCGATGT TATC GCATCGGCC ATCTTTTTTCCTCGA TERM 1560 1529258 - 1529237 - T 91 -11.6 -3.99374 | opp_overlap 1529237 1529236 1529234 GTCTATCAATAATAA GGCCGATG TTATCG CATCGGCC ATCTTTTTTCCTCGA Cphamn1_1411 1530233 - 1529301 - | HpcH/HpaI aldolase TERM 1561 1530373 - 1530400 + r 78 -6.2 -4.64766 | opp_overlap 1530372 1530375, overlap 1530375 CCTGGAGAATCATAT CAGCAGGAACAG GGTA CTGCTCTTGCCG TTTTTGCACTGTAAC Cphamn1_1412 1531188 - 1530727 - | DNA mismatch endonuclease Vsr Cphamn1_1413 1532545 - 1531283 - | DNA-cytosine methyltransferase Cphamn1_1414 1534558 - 1532651 - | hypothetical protein TERM 1562 1533742 - 1533753 + g 70 -4.4 -4.66938 | TTCTCCACAGGGCTT TTGC CGTA GCAA TTTTGTGTTCGCACT TERM 1563 1534371 - 1534347 - G 79 -9.3 -4.20696 | overlap 1534339 CGATCAAGTCGAAAA TCGGCAGGCTT GCG AAACCTGTCGA CCCCTAACAATACCG Cphamn1_1415 1538220 - 1534573 - | helicase domain protein TERM 1564 1535550 - 1535536 - G 90 -6.4 -5.26316 | GGACTCGATAAAAAA GCTCCT GAA AAGAGC GGAGGCGAAAACCCT TERM 1565 1538005 - 1538043 + g 70 -9.7 -3.21938 | opp_overlap 1537997, overlap 1538006 1538008 AAGCAATCCCACCCC ATATTTCTGGTGAGGGG CGTCA CCCTTCATCAGAAGTAC TTCCTCCAATTTTGA TERM 1566 1538006 - 1538042 + g 77 -13.2 -2.52681 | opp_overlap 1537997, overlap 1538005 1538008 AGCAATCCCACCCCA TATTTCTGGTGAGGGG CGTCA CCCTTCATCAGAAGTA CTTCCTCCAATTTTG TERM 1567 1538008 - 1538040 + g 71 -11.4 -2.79291 | opp_overlap 1537997, overlap 1538006 1538005 CAATCCCACCCCATA TTTCTGGTGAGGGG CGTCA CCCTTCATCAGAAG TACTTCCTCCAATTT Cphamn1_1416 1539949 - 1538213 - | NERD domain protein TERM 1568 1539105 - 1539117 + g 74 -7.7 -4.19238 | TTGGGCAATTGCGGC TGGAC AGC GTCCA TTTTACGATTGAGCC Cphamn1_1417 1541559 - 1539937 - | hypothetical protein TERM 1569 1540841 - 1540859 + g 70 -3 -4.86731 | AAGGCATCAGGCACG CCGTTAAG AGC CATACCGG TTTTGTTTGCCAAAA Cphamn1_1418 1542530 - 1541562 - | hypothetical protein Cphamn1_1419 1543937 - 1542990 - | protein of unknown function DUF477 Cphamn1_1420 1544581 - 1543934 - | protein of unknown function DUF477 Cphamn1_1421 1545728 - 1544652 - | lysine 2,3-aminomutase YodO family protein TERM 1570 1545611 - 1545595 - G 71 -6.5 -4.24294 | opp_overlap 1545595 1545597, overlap 1545597 ATCAATGATGCAAAA TAGGGAG TCA CCCCCCA TTTCGTGTCCAGCGA Cphamn1_1422 1545918 - 1546799 + | NmrA family protein Cphamn1_1423 1547927 - 1546950 - | protein of unknown function DUF1568 Cphamn1_1424 1548736 - 1548158 - | hypothetical protein TERM 1571 1548239 - 1548218 - G 70 -8.9 -3.53224 | GAGCTCGGCCGGAAA TGTATTATC CCCG GATAATACA GGTGGATTATAGGTT TERM 1572 1549065 - 1549078 + G 73 -5.3 -4.68724 | TTTGGGTATCTGCGA CGATA TCGA TATCG TTTTCTCTTCACTGG TERM 1573 1549372 - 1549358 - g 70 -4.2 -4.59853 | overlap 1549360 TCAATCTTGCAAAAA TGGGCA TAA TGCCGA TCCTGGGAGACGGGG TERM 1574 1549672 - 1549695 + G 70 -2.3 -5.00884 | overlap 1549673 AGCGTTGCACCGCAA CTCGGCACG CATCAT CTTGCCGAC TTTTTTAAAGAGAAT Cphamn1_1425 1548844 - 1549716 + | NAD-dependent epimerase/dehydratase Cphamn1_1426 1550059 - 1549700 - | hypothetical protein TERM 1575 1550962 - 1550923 - g 76 -11.6 -3.33696 | gap 1, opp_overlap 1550903 1550940 CCTGTTGCCAAGGAA CATACTCTTGAAGAGC-TG CGC CATGCGCTTCATGAGTATG CCGATATGGTAAAAG Cphamn1_1427 1550188 - 1551276 + | radical SAM enzyme, Cfr family Cphamn1_1428 1551297 - 1552031 + | hypothetical protein Cphamn1_1429 1552052 - 1552708 + | Nucleoside-triphosphate--adenylate kinase TERM 1576 1552738 - 1552756 + F 100 -8.9 -5.4833 | opp_overlap 1552742 ATTTTTTTATTTCAA GTCAGTG CTTCA CACTGAC TTTTTTATTGCATCC TERM 1577 1553176 - 1553166 - g 100 -6.8 -5.28176 | TTCAGCGACAAAAAA GTCG TTA CGAC CCCGTTGCGAAAAGA Cphamn1_1430 1552773 - 1555211 + | primosomal protein N' Cphamn1_1432 1556961 - 1555465 - | transposase, IS5 family, putative TERM 1578 1555594 - 1555574 - G 100 -8.2 -5.30686 | AACAGGCACAAAAAA GGAGCGGC GAGCA GCCGGTCC AGGTTCATCACGAGG TERM 1579 1557340 - 1557322 - g 80 -3 -5.27399 | overlap 1557325 GAATACACTAAAAAA CAACCGGT TAA AACGGTAG GCATTACGCTTTTCC Cphamn1_1433 1557283 - 1557783 + | DoxX family protein TERM 1580 1557991 - 1557974 - f 70 -5.5 -4.38322 | opp_overlap 1557974 1557972 TGAACCATAAAACAA CGATCCC TGCA GGTATCG TATTGACTTTTTTTC Cphamn1_1434 1557994 - 1558815 + | hypothetical protein Cphamn1_1435 1559549 - 1558941 - | outer surface protein, putative Cphamn1_1436 1560169 - 1559714 - | 3-dehydroquinate dehydratase, type II Cphamn1_1437 1560828 - 1560169 - | protein of unknown function UPF0005 Cphamn1_1438 1562688 - 1561216 - | heat shock protein HslVU, ATPase subunit HslU Cphamn1_1439 1563321 - 1562773 - | 20S proteasome A and B subunits Cphamn1_1440 1564851 - 1563403 - | RNA polymerase, sigma 54 subunit, RpoN Cphamn1_1441 1565389 - 1564838 - | hypothetical protein Cphamn1_1442 1565679 - 1566575 + | Methenyltetrahydrofolate cyclohydrolase Cphamn1_1443 1566581 - 1567945 + | DNA repair protein RadA Cphamn1_1444 1568037 - 1568378 + | membrane protein of unknown function TERM 1581 1569196 - 1569177 - g 71 -7.8 -3.97947 | CTCATTCAGCACAAA GAGCCGGT AATA ACCTGCTC GAACATAACCACCTA Cphamn1_1445 1568412 - 1569368 + | Alcohol dehydrogenase GroES domain protein Cphamn1_1446 1569373 - 1570917 + | ABC transporter-related protein Cphamn1_1447 1570930 - 1571946 + | inner-membrane translocator Cphamn1_1448 1573831 - 1571948 - | Chloride channel core TERM 1582 1573572 - 1573548 - G 84 -4.9 -5.26875 | overlap 1573562 CCTTCAATCAAAAAA GAGGTTCCGAA AAC TTCGAGCCCTC CGAAAAAGAAATTAC TERM 1583 1574002 - 1573990 - g 73 -3.3 -5.0133 | overlap 1573997 TATGCCTTCAAAAAA TACCG AAC CGGAA AAACCGATAAAAAAA Cphamn1_1449 1573855 - 1574067 + | hypothetical protein TERM 1584 1574119 - 1574109 - f 71 -2.4 -5.05301 | AAAGAACGACAAAAA GCGG TTC CGGC GCAATAAAGTCCATG Cphamn1_1450 1574132 - 1574326 + | hypothetical protein TERM 1585 1574351 - 1574372 + F 100 -13.1 -4.63218 | opp_overlap 1574337 AGCACCCGCGGTCTG GAGCCATTC TCCG GAATGGCTC TTTTATTCGAACGCA Cphamn1_1451 1574401 - 1574568 + | hypothetical protein Cphamn1_1452 1575312 - 1574578 - | PASTA domain containing protein Cphamn1_1453 1575421 - 1576827 + | transposase IS4 family protein Cphamn1_1454 1578109 - 1577135 - | Polyprenyl synthetase TERM 1586 1577336 - 1577348 + g 73 -2.7 -4.91511 | overlap 1577320 CCTTGAACTTTTCAG GATTG ACT TAATC TTTTTCTGCTCGGAT Cphamn1_1456 1580445 - 1579456 - | transposase IS4 family protein Cphamn1_1457 1580942 - 1580445 - | hypothetical protein TERM 1587 1581554 - 1581542 - R 74 -5.5 -4.72272 | overlap 1581543 1581544 GGCTCCCATGAAAAA CCGTC GTG AACGG CGACCCAGGAGCGCC Cphamn1_1458 1581987 - 1581691 - | NADP oxidoreductase, coenzyme F420-dependent TERM 1588 1583269 - 1583241 - g 78 -2.3 -5.252 | overlap 1583244 GAGCTTGAGAAAAAA GACGCGATCAGTC GTG AACTGGTCGAACC CGAGGAAGAGGAAAA Cphamn1_1459 1583166 - 1584032 + | Sec-independent protein translocase, TatC subunit Cphamn1_1460 1584674 - 1584021 - | dephospho-CoA kinase TERM 1589 1584677 - 1584691 + r 75 -5 -4.74103 | TCCTTTTATTCATCA CGATCT TTG AGATTG TTTTTCACTTCAAGC Cphamn1_1461 1585005 - 1584667 - | hypothetical protein Cphamn1_1462 1585197 - 1585802 + | Superoxide dismutase TERM 1590 1585858 - 1585819 - T 100 -7.2 -5.47218 | gap 1, opp_overlap 1585826 1585831 1585851, overlap 1585831 CTGCATTGAAAAAAA GTAACCGCAAAAGCCCCGA ACT CCGGGGCTTTT-CTATTTC AAGTCATGCCTCCAC TERM 1591 1585826 - 1585852 + T 80 -10.9 -3.39018 | opp_overlap 1585819 1585831, overlap 1585831 1585851 GAAAAAAAGTAACCG CAAAAGCCCCG AACTC CGGGGCTTTTC TATTTCAAGTCATGC TERM 1592 1585831 - 1585847 + T 95 -10.8 -4.79451 | opp_overlap 1585831 1585819, overlap 1585826 AAAGTAACCGCAAAA GCCCCG AACTC CGGGGC TTTTCTATTTCAAGT TERM 1593 1585847 - 1585831 - T 93 -11.5 -4.2237 | opp_overlap 1585826 1585831, overlap 1585819 AAAGTAACCGCAAAA GCCCCGA ACT CCGGGGC TTTTCTATTTCAAGT TERM 1594 1586009 - 1585973 - T 81 -11.7 -3.0264 | opp_overlap 1585974 AAATTCCTTTTAATA GTTCCTAAGTTGACCGA CAA TCGATCAACTTAGGCAA TTACATCCAGGGCAG TERM 1595 1585974 - 1586009 + T 79 -11.4 -3.05384 | gap 1, opp_overlap 1585973 AATTCCTTTTAATAG TT-CCTAAGTTGACCGA CAA TCGATCAACTTAGGCAA TTACATCCAGGGCAG Cphamn1_1463 1586834 - 1586010 - | hypothetical protein TERM 1596 1586081 - 1586097 + g 79 -12.3 -3.21747 | opp_overlap 1586081 GAGTACGGTATTGAA TCCGGAG ATT CTCCGGA TTGATAGTCCGCTCA TERM 1597 1586097 - 1586081 - G 77 -12.3 -3.07113 | opp_overlap 1586081 GAGTACGGTATTGAA TCCGGAG ATT CTCCGGA TTGATAGTCCGCTCA TERM 1598 1586455 - 1586441 - G 73 -2.8 -5.0538 | opp_overlap 1586449, overlap 1586449 1586450 GCGCATTGGAAAAAA GCTC ATAACCG GAGC GCACTCCGAGAATTT TERM 1599 1587267 - 1587244 - gR 74 -6.7 -4.3739 | GACTTTTTCAGAAAA CAGATCCTG AACGCA CTGGATCTG CGAAAAAAGCTCTAT Cphamn1_1465 1588623 - 1588069 - | hypothetical protein Cphamn1_1464 1587007 - 1588191 + | hypothetical protein Cphamn1_1466 1589507 - 1588929 - | hypothetical protein Cphamn1_1467 1590372 - 1589566 - | thioredoxin Cphamn1_1468 1590573 - 1590424 - | hypothetical protein Cphamn1_1469 1591325 - 1591840 + | hypothetical protein Cphamn1_1470 1591887 - 1592090 + | hypothetical protein Cphamn1_1471 1592106 - 1592462 + | hypothetical protein TERM 1600 1593016 - 1592996 - g 79 -8.2 -4.30441 | CTACAACATCGAAAA CGGCCGCC TTGTC AGCGACCG GCTCAGGCTCGACAG TERM 1601 1594291 - 1594264 - g 70 -4.9 -4.72272 | overlap 1594266 CCGTTGCAGGAAAAA TACCTCTGATC ATGAAA GATCAGAAGTT CGAAATACCGGCCGG TERM 1602 1594289 - 1594266 - g 71 -7.5 -3.98256 | overlap 1594264 GTTGCAGGAAAAATA CCTCTGATC ATGAAA GATCAGAAG TTCGAAATACCGGCC Cphamn1_1472 1592499 - 1594637 + | hypothetical protein Cphamn1_1473 1594703 - 1595350 + | hypothetical protein Cphamn1_1474 1595489 - 1596073 + | hypothetical protein Cphamn1_1475 1596287 - 1597255 + | hypothetical protein Cphamn1_1476 1598478 - 1597237 - | HI0933 family protein TERM 1603 1597493 - 1597503 + g 84 -2.4 -5.61596 | AAGGTACGCTGAAGC GACC GGC GGGC TTTTTTTGTAAGACT Cphamn1_1477 1599928 - 1598756 - | efflux transporter, RND family, MFP subunit Cphamn1_1478 1602499 - 1600136 - | protein of unknown function DUF214 TERM 1604 1602438 - 1602450 + g 83 -9.1 -4.2828 | opp_overlap 1602429 ACAACAGCCGCCACA GCCAG CAT CTGGC TTTTCATGCGTAGCA Cphamn1_1479 1603241 - 1602507 - | ABC transporter-related protein TERM 1605 1603514 - 1603524 + G 73 -3.2 -5.04385 | GGCGCTATCTATATC GGAG CAA TTCC TTTTTTCAGCATCTC TERM 1606 1603595 - 1603577 - g 78 -2.3 -5.28778 | ATCAGGGAGAAAAAA GCGGTAG TACTC CCAACGC TGCTTACGGGCTTCT Cphamn1_1480 1603427 - 1603762 + | hypothetical protein Cphamn1_1481 1603759 - 1605243 + | pyridine nucleotide-disulphide oxidoreductase dimerisation region Cphamn1_1482 1605317 - 1605787 + | nuclear protein SET Cphamn1_1483 1606228 - 1605809 - | hypothetical protein Cphamn1_1484 1606653 - 1606378 - | hypothetical protein Cphamn1_1485 1607890 - 1606667 - | iron-containing alcohol dehydrogenase TERM 1607 1607902 - 1607919 + r 70 -6.3 -4.18762 | gap 1 CCATAACTTCATTCT GCC-CTTC ACG GAAGAGGC TTTTCGCTCCAGATT Cphamn1_1486 1609028 - 1607907 - | KWG Leptospira repeat protein Cphamn1_1487 1609506 - 1609033 - | protein of unknown function DUF134 TERM 1608 1609677 - 1609659 - R 74 -11 -2.64472 | overlap 1609655 CACTCTTCAAAGTCA TGCCGGAC TTG ATCCGGCA TCCACGCTGACTATA Cphamn1_1488 1610785 - 1609805 - | C4-dicarboxylate transporter/malic acid transport protein Cphamn1_1489 1611402 - 1610857 - | OsmC family protein Cphamn1_1490 1612241 - 1611495 - | cobalamin-5-phosphate synthase CobS Cphamn1_1491 1613131 - 1612238 - | alpha/beta hydrolase fold Cphamn1_1492 1614319 - 1613264 - | nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase Cphamn1_1493 1615546 - 1615025 - | Adenosylcobinamide-phosphate guanylyltransferase Cphamn1_1494 1615692 - 1615898 + | hypothetical protein Cphamn1_1495 1615977 - 1616294 + | hypothetical protein TERM 1609 1616364 - 1616381 + G 100 -11.3 -4.70659 | opp_overlap 1616364 ACGCATGCACAAAAA GGCTCAC CGGA GTGAGCC TTTTTGCCTATAGAG TERM 1610 1616381 - 1616364 - g 100 -11.3 -4.88067 | opp_overlap 1616364 ACGCATGCACAAAAA GGCTCAC CGGA GTGAGCC TTTTTGCCTATAGAG Cphamn1_1496 1616333 - 1616968 + | hypothetical protein TERM 1611 1617479 - 1617465 - g 84 -4.2 -5.24129 | opp_overlap 1617467, overlap 1617466 TCCGGTGAGAAAAAA GGGTGT GCT ACACTC CTTCAAGCTGGATGG Cphamn1_1497 1616968 - 1617816 + | hypothetical protein TERM 1612 1619001 - 1618969 - g 81 -13.5 -3.03124 | GGCGATCCGGCAATA TCCTTGCCGACGAGA CGA TCTCATCGACATGGA CAGGCTTCGGCCATA TERM 1613 1620295 - 1620283 - g 70 -4.8 -4.68593 | opp_overlap 1620286, overlap 1620285 TGCAGCAGGCAAAAA CCGA CCGGT TCGG CTACTATCGTGTTGA Cphamn1_1498 1617813 - 1620521 + | hypothetical protein Cphamn1_1499 1621336 - 1620518 - | Xylose isomerase domain protein TIM barrel Cphamn1_1501 1622694 - 1621672 - | alpha/beta hydrolase fold Cphamn1_1500 1621483 - 1621782 + | hypothetical protein TERM 1614 1622326 - 1622352 + gT 76 -10.8 -3.06501 | GTAGGGCGGTTCTAT CTGCAATCGCTG CAG CAGCGTGTGCAG TTCGGTCACGATCTG Cphamn1_1502 1623271 - 1622744 - | hypothetical protein TERM 1615 1623022 - 1622998 - G 95 -12.1 -4.20516 | CTTCCATTGAAGAAA CCGACGGCAAA CGC TCTGCCGGCGG GATGACGTCCTCGTG TERM 1616 1623202 - 1623212 + g 71 -6.8 -4.18018 | opp_overlap 1623202 TCTCTTCACTCACAA GCTC CAT GAGC TTTTCGGTCGCCCGA TERM 1617 1623437 - 1623426 - H 76 -5.8 -4.7923 | opp_overlap 1623426 AGGTAAACAAACAAA CGCT TTTC AGCG TTGTAAATAATATGC TERM 1618 1623787 - 1623754 - g 93 -3.9 -5.81032 | gap 2 GAAGCTGAAAAAAAA GGAGTCTCTTGCCAG ATTTTG CGGGC-AG-GACTCC GTCTGTCAGGCGCTC Cphamn1_1503 1623509 - 1624261 + | ErfK/YbiS/YcfS/YnhG family protein TERM 1619 1625848 - 1625803 - g 71 -5.4 -4.57569 | CCAGGCCGGGAAAAA TGCTCCGAGAAACAACTGGC TCGCGC GTCAATGGTTTCTCGTCGCA GCTGAAAAAGGATTG Cphamn1_1504 1624442 - 1626028 + | Sel1 domain protein repeat-containing protein TERM 1620 1626251 - 1626237 - f 93 -2.8 -5.81412 | CGTATTCAAAAAAAA TTGCGT AAA ACGGAA CGGAATACACCGAAA Cphamn1_1505 1626660 - 1627529 + | UbiA prenyltransferase Cphamn1_1506 1628596 - 1627631 - | protein of unknown function DUF1568 Cphamn1_1507 1629917 - 1628688 - | Rhodopirellula transposase family protein TERM 1621 1629890 - 1629933 + g 76 -8.3 -4.23652 | overlap 1629884 ATTTGATGCGGATCA GCGTTATTTCGTCATCATG TGTCTT CATGATGACAATATAACAC TTTCCTTTATTCGTT Cphamn1_1508 1630429 - 1630058 - | Glyoxalase/bleomycin resistance protein/dioxygenase Cphamn1_1509 1631062 - 1630502 - | Methyltransferase type 11 Cphamn1_1510 1632166 - 1631171 - | quinone oxidoreductase, YhdH/YhfP family Cphamn1_1511 1632765 - 1632193 - | ATP/cobalamin adenosyltransferase Cphamn1_1512 1634179 - 1632920 - | ABC transporter-related protein Cphamn1_1513 1635256 - 1634231 - | transport system permease protein TERM 1622 1634499 - 1634488 - G 71 -7.2 -4.03234 | overlap 1634489 TCCCCCCGATAGAAA CCGC CGTT GCGG CCATCAGGGTTGCCG Cphamn1_1514 1636230 - 1635253 - | cobalamin biosynthesis protein CobD Cphamn1_1515 1637312 - 1636227 - | L-threonine-O-3-phosphate decarboxylase TERM 1623 1637091 - 1637066 - G 90 -12 -4.08706 | CCGGGATGAGATAAA TCCCCTCAAT TGCCCC ATTGAGGGGA AGAACACAGTCATGG Cphamn1_1516 1639124 - 1637637 - | cobyric acid synthase CobQ TERM 1624 1639068 - 1639052 - G 74 -8 -4.09685 | opp_overlap 1639065 CGGCATTGCTGAAAA TACGGC ATAGG GCCGTA GCTACGACGCTTTTC Cphamn1_1517 1639774 - 1639121 - | cob(II)yrinic acid a,c-diamide reductase TERM 1625 1639338 - 1639358 + g 70 -9.7 -3.28712 | overlap 1639339 ACTCCGAGGTTCTCC GCTCTGGCT GCA AGCCAGAGG TTCTGCACCGCACAG TERM 1626 1639339 - 1639357 + g 78 -13.2 -2.57132 | overlap 1639338 CTCCGAGGTTCTCCG CTCTGGCT GCA AGCCAGAG GTTCTGCACCGCACA Cphamn1_1518 1640580 - 1639771 - | hypothetical protein Cphamn1_1519 1642550 - 1640577 - | TonB-dependent receptor TERM 1627 1641164 - 1641178 + g 73 -2.8 -5.055 | opp_overlap 1641165, overlap 1641165 GATAATCCGCGCCAA ACTCTA TTG TAGAGC TTTTTTCCGGCTTGA TERM 1628 1641833 - 1641821 - G 75 -9.1 -3.83226 | AATGATTGACAACAA CACCG ATC CGGTG CCCGTCAAGAAACTC TERM 1629 1642147 - 1642163 + g 70 -10.9 -2.90992 | overlap 1642145 ATAATTTCAATCCTT TCGACGT TTG ACGTCGA TAATTTAGCCAGGTT TERM 1630 1642441 - 1642463 + g 80 -4.9 -5.06414 | GCGGTAACAACTATT TCTCCAC TTGAATAGT GTGGAGA TTTTTCTTCACCGGA TERM 1631 1642932 - 1642908 - R 100 -7.1 -5.47218 | overlap 1642870 GGCCATGCAAAAAAA CAACAGTTGAC CGC GTCTACAGTTG CGGGTACAGTGTACG Cphamn1_1520 1643429 - 1643058 - | hypothetical protein TERM 1632 1645042 - 1645028 - g 70 -8.6 -3.73072 | opp_overlap 1645028 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG Cphamn1_1521 1643711 - 1645108 + | hypothetical protein TERM 1633 1645280 - 1645258 - f 74 -6.9 -4.30559 | overlap 1645278 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG TERM 1634 1645390 - 1645402 + F 72 -7.7 -3.95836 | AAACTATCCCGCTTA GCTGT AAA ACAGC TTCTGTTTTGCAGAT Cphamn1_1522 1645438 - 1645851 + | NUDIX hydrolase Cphamn1_1523 1645826 - 1646725 + | periplasmic binding protein TERM 1635 1647282 - 1647297 + G 70 -3.2 -4.77165 | overlap 1647261 TGGGGATGCTCGGGG CCGCTT TTGG AATCGG TTTTATTATCGGACC Cphamn1_1524 1646882 - 1648159 + | major facilitator superfamily MFS_1 TERM 1636 1649066 - 1649039 - g 87 -7.8 -5.01732 | gap 1 AACTGGCGGAAAAAA GCGACAATCTCTG GCT CAGA-ATCGCCGC ACTTTTCCATGATAT TERM 1637 1649632 - 1649603 - g 100 -2.9 -6.0427 | AGTACATAAAAAAAA CATACCGTGAAAT GCAG AATTCATGATATG GCATTATCCATTGAA Cphamn1_1525 1648201 - 1649628 + | polynucleotide adenylyltransferase/metal dependent phosphohydrolase TERM 1638 1651034 - 1650988 - g 70 -2.8 -4.88388 | overlap 1651000 ACAAGCTCAGAAAAA GCGTTGACACCATCTTTGCCCG TAA CGGGCTCTGAGAATGTAAACAC GCCTATCGGGGTTTG Cphamn1_1526 1649745 - 1651022 + | adenylosuccinate lyase Cphamn1_1527 1651222 - 1651617 + | hypothetical protein TERM 1639 1651676 - 1651690 + G 74 -4.2 -4.78477 | TGGGCTCAGTTGCGC TCACGC TTG GCCTGA TTATTTTTTATGTCT TERM 1640 1651725 - 1651714 - g 76 -4.4 -5.0133 | TATGTCTCGAAAAAA TTCC ATGT GGAA GAAGATCCTATGGTG TERM 1641 1652383 - 1652362 - g 70 -2.9 -4.85129 | ATCATACAGGAAAAA TGTACATCC TGCG GGAAGTGCA TCGAAGTCTGTCCCA Cphamn1_1528 1651624 - 1652463 + | electron transport complex, RnfABCDGE type, B subunit TERM 1642 1652954 - 1652927 - g 84 -2 -5.60993 | gap 1, overlap 1652931 CTCCGGACAAAAAAA TCGACACCA-TCA TTC TGAACGGTGCTGA ATGTGAGCCATTTCT TERM 1643 1653310 - 1653300 - g 71 -5.4 -4.56775 | AGCCGTCTGCAAAAA CAAG CCT CTTG TTGACCGCGTCGTTA TERM 1644 1653389 - 1653400 + G 71 -5.8 -4.36914 | TCGGTACAAGCTTCA GGGA TATT TCCC TTTTCTGCGGCAACC Cphamn1_1529 1652464 - 1653789 + | electron transport complex, RnfABCDGE type, C subunit TERM 1645 1654458 - 1654443 - g 78 -6.2 -4.85599 | GTTATGGTATAAAAA GTACAT CACG ATGTAC ATACCTCTGACCATT Cphamn1_1530 1653808 - 1654803 + | electron transport complex, RnfABCDGE type, D subunit Cphamn1_1531 1654800 - 1655345 + | electron transport complex, RnfABCDGE type, G subunit Cphamn1_1532 1655342 - 1655947 + | electron transport complex, RnfABCDGE type, E subunit TERM 1646 1656351 - 1656363 + G 73 -3.3 -4.9792 | overlap 1656344 TTCGTTCGTCACCTC GGTGG TAT TCGCC TTTTTCTCTGCAATG Cphamn1_1533 1655944 - 1656531 + | electron transport complex, RnfABCDGE type, A subunit TERM 1647 1656577 - 1656560 - T 84 -9.8 -4.25056 | opp_overlap 1656560 TATCGTAGCAAGAAA GCCGCC TTGCAG GGCGGC TTTTTCAAACATATC TERM 1648 1656560 - 1656577 + T 89 -10.5 -4.59109 | opp_overlap 1656560 TATCGTAGCAAGAAA GCCGCCT TGCA GGGCGGC TTTTTCAAACATATC Cphamn1_1534 1657304 - 1656591 - | Inorganic pyrophosphatase TERM 1649 1658956 - 1658944 - g 82 -7.7 -4.62872 | opp_overlap 1658944 AGCAACCCGGAAAAA CCGTT TGT AACGG TCTTGAACCCGGATG Cphamn1_1535 1657426 - 1660344 + | TonB-dependent receptor TERM 1650 1660363 - 1660400 + F 100 -14.3 -4.03234 | GAAAGACTTATTGCC GGGAAGGGTTGAACTTT ATAC AAGGTTCGGCCCTTCTC TTTCTCTAACCGGGA Cphamn1_1536 1660434 - 1661504 + | phytase Cphamn1_1537 1661858 - 1661962 + | hypothetical protein Cphamn1_1539 1664343 - 1663636 - | hypothetical protein Cphamn1_1540 1665849 - 1664485 - | hypothetical protein TERM 1651 1664721 - 1664735 + g 82 -8.6 -4.55128 | TATGAAGCTTGTCGT TCAACG AAT CGTTGA TTTTACTTTCCAAAT Cphamn1_1541 1666366 - 1666052 - | hypothetical protein Cphamn1_1542 1666967 - 1666413 - | restriction endonuclease Cphamn1_1543 1667650 - 1667276 - | hypothetical protein TERM 1652 1668789 - 1668775 - RH 72 -7.1 -4.11216 | TCTGGAGCTGGAAAA GGAGC ATCTG GCTCC CTTACCGCCAAAGCA Cphamn1_1546 1670499 - 1670071 - | hypothetical protein Cphamn1_1545 1669402 - 1670142 + | IstB domain protein ATP-binding protein TERM 1653 1670618 - 1670583 - TR 81 -12 -3.07233 | gap 1, opp_overlap 1670579 1670574 1670595 TTAGAATTGCTAACA GCCGACCGAAAAA-CGC GCA GCGGTTTTTGGGTCAGC TGGATGTGATTGTTA Cphamn1_1547 1671401 - 1670631 - | response regulator receiver protein TERM 1654 1671370 - 1671386 + g 82 -6.5 -4.88067 | opp_overlap 1671347 CTTTTGGTAAACCCT TTCGCTG TAT CTGCGAA TTTTTCTGGCTCCAT Cphamn1_1548 1672211 - 1671492 - | hypothetical protein Cphamn1_1549 1672890 - 1672300 - | hypothetical protein Cphamn1_1550 1673108 - 1673380 + | hypothetical protein Cphamn1_1551 1674751 - 1673645 - | phosphatidylserine decarboxylase-related TERM 1655 1674948 - 1674989 + r 91 -6.9 -5.46657 | overlap 1674952 ACATTGAGCCCATTT TCGAGTATCTAAAAAATAA GTCA TTATTTTTCAGATACTTAA TTTTTTCTTGGGCTC TERM 1656 1674952 - 1674985 + r 81 -9.9 -4.04157 | overlap 1674948 TGAGCCCATTTTCGA GTATCTAAAAAATAA GTCA TTATTTTTCAGATAC TTAATTTTTTCTTGG TERM 1657 1676085 - 1676060 - R 100 -17.7 -3.31144 | opp_overlap 1676063 GCGGGAGTTCGACAA GCAGGTCAAGC GGGC GCTTGACCTGC TTGAACGAAACGAAC TERM 1658 1676063 - 1676082 + r 79 -12.2 -2.70932 | opp_overlap 1676060 GGAGTTCGACAAGCA GGTCAAGC GGGC GCTTGACC TGCTTGAACGAAACG TERM 1659 1676587 - 1676607 + r 79 -11.3 -3.11687 | opp_overlap 1676589 ACTAATTGGCGAACT CAGGAAAAA ATC TTTTTCCTG TTACGTGCTGATTCA Cphamn1_1553 1677626 - 1676769 - | peptidase C14 caspase catalytic subunit p20 Cphamn1_1554 1678002 - 1679228 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1660 1679292 - 1679328 + F 83 -11 -3.70446 | opp_overlap 1679290 1679289 1679298, overlap 1679295 TACCCCGCGAAACGT CAATCAGCAGGCCT GAACTGAAA ATGCCTGCTGATTG TTATGTTCACTATCA TERM 1661 1679674 - 1679662 - f 85 -7.7 -4.614 | opp_overlap 1679661, overlap 1679664 GGGAATGACAGAAAA GGGAA CGT TTCCC GTCCTTGTGCGCTTT TERM 1662 1679849 - 1679814 - f 77 -11.2 -2.78384 | TGTTCTTTTATGAGA CCTACGTTGAGCGATT GTTG AAACGATCAACGCAGG TGAGAGATACAGAAA Cphamn1_1555 1679885 - 1680088 + | thiamine biosynthesis protein ThiS Cphamn1_1556 1680116 - 1680895 + | thiazole biosynthesis family protein Cphamn1_1557 1680892 - 1681962 + | biotin and thiamin synthesis associated Cphamn1_1558 1682534 - 1682079 - | hypothetical protein Cphamn1_1559 1683780 - 1682551 - | hypothetical protein Cphamn1_1560 1687110 - 1683946 - | UvrD/REP helicase TERM 1663 1684555 - 1684569 + g 71 -7.8 -4.08064 | opp_overlap 1684555, overlap 1684520 1684519 CGGAGCGTACCAGAA GAGCGG TGT TCGCTC TTTTCCGGCCGGGTT Cphamn1_1561 1689737 - 1687107 - | hypothetical protein TERM 1664 1687298 - 1687312 + g 70 -11.4 -2.61681 | overlap 1687297 GCCGCCATATCGCCT GGGAGG ATG CCTCCC CTTCTCCCCTTACCG TERM 1665 1687400 - 1687414 + g 79 -7 -4.66537 | opp_overlap 1687400 TATAGTAGGCAAGAA CCGGCC AGA GTCCGG TTTTCTGTTCGACCA TERM 1666 1689205 - 1689179 - G 77 -10.8 -3.543 | opp_overlap 1689184, overlap 1689157 GCAGAAAATGCAGAA CCGAACCTTCAG GAG CAGCAGGTTCGG TAAACGGTCCCCGAT Cphamn1_1562 1690534 - 1691127 + | major paralogous domain Cphamn1_1563 1692023 - 1691313 - | major paralogous domain TERM 1667 1692024 - 1692012 - G 86 -3.4 -5.55769 | TGCGATAACAAAAAA GATG AGAAA CATC GGGAACAGTGAACGG TERM 1668 1692198 - 1692171 - H 74 -7.8 -4.12738 | opp_overlap 1692170 1692171 TTACATCAAATCAAA TCGAATCCATAC AATC GTATGTACTCGA CTGTTTCTCGAACAA TERM 1669 1692315 - 1692273 - g 79 -11.3 -3.55603 | overlap 1692277 AATGCGCAAAGAACA CAAACCGCTGAGCGCCG GACAGATAG CGGAGATCAGCGGTCTG GATCGTAAAGAGGTA TERM 1670 1692311 - 1692277 - g 79 -8.5 -4.40333 | overlap 1692273 CGCAAAGAACACAAA CCGCTGAGCGCCG GACAGATAG CGGAGATCAGCGG TCTGGATCGTAAAGA Cphamn1_1564 1692229 - 1692408 + | hypothetical protein TERM 1671 1692425 - 1692410 - T 79 -4 -5.25976 | gap 1 AACCAAAAAAATAAA CCT-GAG TTA CTCCAGG CCCTTGGTATCGAAG Cphamn1_1565 1692709 - 1692416 - | hypothetical protein Cphamn1_1566 1693441 - 1692842 - | Methyltransferase type 11 TERM 1672 1692948 - 1692938 - G 80 -4.6 -5.06451 | GAGGATCTCAAAAAA CGGC TCC ACCG CTGTCGCTATCTGAC Cphamn1_1567 1694405 - 1693428 - | alpha/beta hydrolase fold TERM 1673 1693659 - 1693699 + g 73 -3.4 -5.01732 | gap 1, overlap 1693673 GTTGACAATGTCAGG CAATGA-GCGGGTAACTTC GCGG GAAGTGATTTGCTTCGTTG TTTTTTGAACGACTT TERM 1674 1694983 - 1694965 - g 74 -3.9 -5.00884 | gap 1, overlap 1694969 ATGTGGTCGAAAAAA GCTATTGC CGAA GCAA-AGC GCTTCTGCGACGTAC Cphamn1_1568 1694650 - 1695732 + | phosphoserine aminotransferase TERM 1675 1696402 - 1696374 - g 71 -7.5 -4.06904 | overlap 1696376 CGACGCAACCAGAAA CATGCTGAATGCC GAA AGCATTAAGCATA TGAAAAAAAACGCCA Cphamn1_1569 1695745 - 1696908 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Cphamn1_1570 1697042 - 1697713 + | HAD-superfamily hydrolase, subfamily IA, variant 3 Cphamn1_1571 1698098 - 1697796 - | plasmid stabilization system TERM 1676 1697845 - 1697861 + g 100 -3 -6.4275 | opp_overlap 1697845 CTGCAATGCATTACA GCAATG ACTAC TATTGC TTTTTTTTCTTTTTC TERM 1677 1697902 - 1697891 - G 70 -2.2 -5.03145 | CAATTCTGTAAAAAA CTCC GAAA GGAA AACGATGTATGATTG Cphamn1_1572 1698304 - 1698095 - | addiction module component, TIGR02574 family Cphamn1_1574 1699714 - 1699040 - | hypothetical protein Cphamn1_1575 1699908 - 1699726 - | cytochrome oxidase maturation protein, cbb3-type Cphamn1_1576 1702597 - 1700174 - | heavy metal translocating P-type ATPase TERM 1678 1702016 - 1702002 - G 83 -2.7 -5.40474 | overlap 1702003 ATCCCTTGAAAAAAA CCCGC ATAAA GCGCG GTAATGAAAAGCATC TERM 1679 1702404 - 1702418 + g 76 -11.4 -3.29144 | GGAGCACCGGGAGTC CAGCCG CAA CGGCTG TTGTAGAAAGCATCG Cphamn1_1577 1702976 - 1702584 - | hypothetical protein Cphamn1_1578 1703443 - 1703006 - | hypothetical protein Cphamn1_1579 1705666 - 1704260 - | transposase IS4 family protein Cphamn1_1581 1707652 - 1707440 - | hypothetical protein TERM 1680 1707744 - 1707726 - R 74 -11 -2.75845 | overlap 1707714 1707722 ATAGCGGAAAATTCA TGCCGCAC TTG ATGCGGCA TCCATACATGTACTC TERM 1681 1707796 - 1707772 - R 80 -8.6 -4.16842 | overlap 1707774 CTCAGGCCTAAGAAA GATTCCCGTG TCAAG CACGGGAATA ACTGAGAAATTGGTT TERM 1682 1707794 - 1707774 - R 87 -11.2 -3.68324 | overlap 1707772 CAGGCCTAAGAAAGA TTCCCGTG TCAAG CACGGGAA TAACTGAGAAATTGG Cphamn1_1582 1708956 - 1707853 - | polyferredoxin-like protein TERM 1683 1708537 - 1708525 - G 91 -4.7 -5.55769 | overlap 1708526 TTGTACAAGAAAAAA GCCGG TAA CCGGA ACGGATGAAAATAGG TERM 1684 1708536 - 1708526 - G 72 -8.2 -3.92377 | overlap 1708525 TGTACAAGAAAAAAG CCGG TAA CCGG AACGGATGAAAATAG Cphamn1_1583 1709427 - 1708969 - | cytochrome c class I Cphamn1_1584 1709602 - 1709420 - | hypothetical protein Cphamn1_1585 1710276 - 1709599 - | cytochrome C oxidase mono-heme subunit/FixO Cphamn1_1586 1711679 - 1710273 - | cytochrome c oxidase subunit I Cphamn1_1587 1712092 - 1712541 + | 6-pyruvoyl tetrahydropterin synthase and hypothetical protein Cphamn1_1588 1712501 - 1713172 + | GTP cyclohydrolase I Cphamn1_1589 1713348 - 1714415 + | protein of unknown function UPF0118 TERM 1685 1714515 - 1714495 - T 77 -11.2 -2.6952 | overlap 1714491 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGGAGTGAAG TERM 1686 1714557 - 1714539 - T 74 -11 -2.66522 | overlap 1714535 1714536 AGTGAAGAGAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGCAGACCCTG TERM 1687 1714870 - 1714858 - T 73 -4.8 -4.614 | GGGAATGACAGAAAA GGGA TAGTT TCCC GTCCTTGTACTCCAA Cphamn1_1590 1715389 - 1714907 - | hydrogenase maturation protease TERM 1688 1715485 - 1715503 + r 70 -10.3 -2.54387 | opp_overlap 1715481 AGGGGAAGATAGTCA TGCCGGA CTTGA TCCGGCA TCCATTCAAAATTTA Cphamn1_1591 1716409 - 1715720 - | Ni/Fe-hydrogenase, b-type cytochrome subunit Cphamn1_1592 1718140 - 1716422 - | nickel-dependent hydrogenase large subunit TERM 1689 1716839 - 1716825 - G 76 -7.1 -4.48741 | TAATGCATCATAAAA CCTGC GGTCT GCAGG CACTCTATACCCCGG TERM 1690 1717074 - 1717087 + g 71 -5.2 -4.53303 | AACGGTGGTTTCGGT CCGG TGTATT CCGG TTTTGTCTCACCCTC Cphamn1_1593 1719284 - 1718193 - | hydrogenase (NiFe) small subunit HydA TERM 1691 1718421 - 1718364 - G 75 -10.6 -3.48772 | gap 3 AAGCCTGGTATAGAA CGGC-CC-GTCATCCCAGTATCCGGGTGC TGC GCAGCCG-ATACAGGGGTGCCCGGAGCCG ATCGGGAAACTGACG Cphamn1_1594 1719781 - 1721217 + | hypothetical protein Cphamn1_1595 1722264 - 1721221 - | protein of unknown function DUF21 TERM 1692 1722133 - 1722145 + g 73 -3.3 -4.99043 | ATGTTTTAAAAGAGC GCCAA CGT TAGGC TTTTCTTTCTCAAGA Cphamn1_1596 1722459 - 1722280 - | hypothetical protein TERM 1693 1722538 - 1722565 + r 100 -18.5 -4.02736 | opp_overlap 1722538 ATTGAGCACAAAAAA GCCCGACCTGC AGTGAA GCAGGTCGGGC TTTCTCATATCAGTT TERM 1694 1722565 - 1722538 - R 100 -18.5 -5.31877 | opp_overlap 1722538 ATTGAGCACAAAAAA GCCCGACCTGC AGTGAA GCAGGTCGGGC TTTCTCATATCAGTT Cphamn1_1597 1724137 - 1722602 - | proton-translocating NADH-quinone oxidoreductase, chain N Cphamn1_1598 1725794 - 1724157 - | proton-translocating NADH-quinone oxidoreductase, chain M Cphamn1_1599 1728142 - 1725854 - | proton-translocating NADH-quinone oxidoreductase, chain L TERM 1695 1726199 - 1726215 + g 73 -2.9 -5.055 | ATAGAGGTAGAGCGG CCGGATA CGC TGTGCGG TTTTTTCAGGATTGA TERM 1696 1727570 - 1727602 + g 91 -5.5 -5.38047 | opp_overlap 1727580 AATTCCAAGCCACAT GCCTATATCACCGAC ACG GTTGGTCAGAAAGGC TTTTTTCTGTGCATC Cphamn1_1600 1728511 - 1728194 - | NADH-ubiquinone oxidoreductase chain 4L Cphamn1_1601 1729043 - 1728519 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Cphamn1_1602 1729693 - 1729073 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 1697 1729125 - 1729139 + g 100 -3.5 -5.95946 | gap 1 GCAGGTTTCGGTTTA GGC-GC CGGG GCTGCC TTTTTTTCTTCTTCA TERM 1698 1729384 - 1729400 + g 79 -8.7 -4.14725 | overlap 1729375 TTCCGCAGACCGCAA GGTCATC CTT GGTGACC TTTATGGTTTCCATC Cphamn1_1603 1730827 - 1729709 - | NADH dehydrogenase (quinone) Cphamn1_1604 1732026 - 1730824 - | NADH dehydrogenase (quinone) Cphamn1_1605 1732598 - 1732071 - | NADH (or F420H2) dehydrogenase, subunit C Cphamn1_1606 1733194 - 1732622 - | NADH-quinone oxidoreductase, B subunit Cphamn1_1607 1733649 - 1733221 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 Cphamn1_1608 1734105 - 1733857 - | hypothetical protein Cphamn1_1609 1734679 - 1734095 - | TPR repeat-containing protein TERM 1699 1735363 - 1735341 - R 73 -6.2 -4.38171 | overlap 1735358 GACACCACATGAAAA CGCGGATTCC ACA GGAATCATCG GCACGACAATCACAC Cphamn1_1611 1736283 - 1735699 - | hypothetical protein TERM 1700 1735868 - 1735840 - G 73 -3.2 -4.99665 | TAAAAAAAACCAAAA TGCTACATCTCC GAGCT GAAGATATACCA GCGCTATCGAAGAAG TERM 1701 1736337 - 1736326 - H 71 -4.4 -4.6902 | opp_overlap 1736331, overlap 1736331 TTACAAGCTTAAAAA CAAG GTAT CTTG AAAGATAGTTTTTAT Cphamn1_1612 1736685 - 1737206 + | histidine triad (HIT) protein TERM 1702 1737512 - 1737493 - f 70 -6.5 -4.2109 | opp_overlap 1737493 1737492, overlap 1737487 CAACAGATACATAAA GGGATTT ACATGG AAATCCC CTTCTGCCCGATAAC TERM 1703 1737805 - 1737794 - g 78 -3.6 -5.09895 | CACTGATCGAAAAAA GCGG CCCT CCAC TTTCCGCCCGTTCAA TERM 1704 1737934 - 1737918 - g 82 -6.5 -4.85599 | overlap 1737919 1737922 CGGATTCGAGAAAAA CGGATGC CCG GCATCCC ATGCAAGGAACACTT TERM 1705 1737933 - 1737919 - g 74 -10 -3.50877 | overlap 1737918 1737922 GGATTCGAGAAAAAC GGATGC CCG GCATCC CATGCAAGGAACACT Cphamn1_1613 1737502 - 1738437 + | Methyltransferase type 12 Cphamn1_1614 1738641 - 1740341 + | sodium/hydrogen exchanger Cphamn1_1615 1740381 - 1741328 + | UspA domain protein TERM 1706 1741610 - 1741587 - g 91 -5.2 -5.40474 | overlap 1741589 ACGCCCGCAAAAAAA CAGAACCCCC TGAA GAGGTTCCTG CTGCAGTTCAAAAAT TERM 1707 1741607 - 1741589 - g 76 -7.4 -4.34482 | overlap 1741587 GCCCGCAAAAAAACA GAACCCCC TGA AGAGGTTC CTGCTGCAGTTCAAA TERM 1708 1742196 - 1742214 + G 100 -9.6 -4.81249 | CTGACCATTGCAATT GTACTGCT TTC AGCAGTGC TTTTTGGCTTTGGCG Cphamn1_1616 1741443 - 1744133 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC Cphamn1_1617 1745642 - 1744239 - | outer membrane efflux protein Cphamn1_1618 1747042 - 1745705 - | AAA ATPase central domain protein TERM 1709 1746262 - 1746286 + g 78 -2.1 -5.26316 | overlap 1746254 CATCGTAGTGCGACG CTCCCTTTTTA TCA TAGACAGGAAG TTTTTTCTGAAGTAC Cphamn1_1619 1747844 - 1747188 - | riboflavin synthase, alpha subunit Cphamn1_1620 1748351 - 1747851 - | Redoxin domain protein Cphamn1_1621 1749053 - 1748637 - | DoxX family protein TERM 1710 1749124 - 1749173 + r 73 -9.2 -3.45742 | opp_overlap 1749128, overlap 1749121 1749131 AGAAAAGCTGTCTAT AAAAGAACACCGGACTGCCCTG TAAAGT CTGAGCAGTCCGGTGTTCTGGA TGTTGTTAATGGTAA TERM 1711 1749169 - 1749128 - R 100 -21 -4.37658 | opp_overlap 1749124 1749121 1749131 AAGCTGTCTATAAAA GAACACCGGACTGCCCTG TAAAGT CTGAGCAGTCCGGTGTTC TGGATGTTGTTAATG TERM 1712 1749131 - 1749166 + r 100 -14.7 -3.45032 | opp_overlap 1749128, overlap 1749124 1749121 CTGTCTATAAAAGAA CACCGGACTGCCCTG TAAAGT CTGAGCAGTCCGGTG TTCTGGATGTTGTTA Cphamn1_1622 1750218 - 1749217 - | Outer membrane protein (porin)-like protein TERM 1713 1749355 - 1749345 - G 71 -6.8 -4.19704 | opp_overlap 1749338, overlap 1749333 1749348 GAAGGTGATGGAAAA CACC ACC GGTG ATGCCCATTCCTTCA Cphamn1_1623 1751778 - 1750663 - | riboflavin biosynthesis protein RibD TERM 1714 1750903 - 1750887 - G 79 -6.5 -4.60808 | overlap 1750895 CCACAAAAACAGAAA GCACACC ATT GGCATGC AGAACATGCAAAACT Cphamn1_1624 1752321 - 1751797 - | CMP/dCMP deaminase zinc-binding TERM 1715 1753877 - 1753895 + G 79 -5.2 -4.92757 | opp_overlap 1753876 1753877, overlap 1753878 CTCGGCAATACGAAC TGCGGC CGAAATT GCCGCG TTTTATTCTTCCTCC Cphamn1_1625 1752411 - 1754057 + | protein of unknown function DUF814 Cphamn1_1626 1754073 - 1754432 + | thioesterase superfamily protein Cphamn1_1627 1755766 - 1754441 - | permease YjgP/YjgQ family protein TERM 1716 1755920 - 1755891 - R 100 -10.8 -5.67063 | opp_overlap 1755893, overlap 1755894 TTCAGGAGAAAAAAA CAATCCGCAGCA CGGTAT TGCTGCGGACTA TGGTGCACTCGGAAG TERM 1717 1755917 - 1755894 - R 100 -12.5 -4.9041 | opp_overlap 1755893, overlap 1755891 AGGAGAAAAAAACAA TCCGCAGCA CGGTAT TGCTGCGGA CTATGGTGCACTCGG TERM 1718 1756039 - 1756076 + r 100 -14.9 -3.53012 | gap 1 GTCCTACTTCTCAGG CTCTTCCA-CCGCGCCGG GAG CCGGTGCGGATGCAGGAG TTTCGACAGGAGCAG Cphamn1_1628 1756380 - 1756027 - | preprotein translocase, SecG subunit TERM 1719 1757080 - 1757112 + G 70 -10 -3.28712 | gap 1, opp_overlap 1757088 TTTTCGTTTCCCTGT CACGAACATTGCAGG CAAA CCTGC-ATCTTCGTG TTCTGGAAGGCAGCA Cphamn1_1629 1756632 - 1757234 + | Imidazoleglycerol-phosphate dehydratase TERM 1720 1757334 - 1757306 - T 100 -12.5 -4.4518 | overlap 1757331 AATGAAAAGCCAAAA GGGCTGAATAGCT AAG AGCTATCAAGCCC GAGGATAACCTTCAG TERM 1721 1757452 - 1757419 - T 72 -7.4 -4.07687 | opp_overlap 1757426, overlap 1757421 1757424 ATTGCCTGCTCAAAA TACAAGAGGCTGCC TTTTTG GACAGCCTCTTGGC GGAAAATCCCCTAAA TERM 1722 1757450 - 1757421 - T 100 -14.4 -3.63744 | opp_overlap 1757426, overlap 1757419 1757424 TGCCTGCTCAAAATA CAAGAGGCTGCC TTTTTG GACAGCCTCTTG GCGGAAAATCCCCTA TERM 1723 1757447 - 1757424 - T 82 -10.3 -3.95435 | opp_overlap 1757426, overlap 1757421 1757419 CTGCTCAAAATACAA GAGGCTGCC TTTTTG GACAGCCTC TTGGCGGAAAATCCC Cphamn1_1630 1759073 - 1757499 - | RNA binding metal dependent phosphohydrolase TERM 1724 1757614 - 1757628 + g 74 -7.2 -4.19238 | GCGAGAATATCTGCC TGTGAA TCA TTCACA TTTTCGCCTTCAACA TERM 1725 1758758 - 1758771 + g 74 -6.7 -4.35682 | CCCTGAGATCCTGAC CCTGA CGTT TCAGG TTATTTTCCTTCTGA Cphamn1_1631 1759651 - 1759388 - | hypothetical protein Cphamn1_1632 1759949 - 1759659 - | hypothetical protein TERM 1726 1759837 - 1759848 + g 70 -4.4 -4.63218 | CTTGTAATCTCCGCC TGCA TCAA TGCA TTTTGTTCCCGGCAC Cphamn1_1633 1762363 - 1759961 - | phenylalanyl-tRNA synthetase, beta subunit TERM 1727 1760574 - 1760564 - G 74 -8.2 -4.00868 | overlap 1760559 CCAGTTAGAAGGAAA CCGG CTT CCGG TAAGAGCGACAACAA TERM 1728 1761629 - 1761645 + g 79 -7.9 -4.55004 | overlap 1761627 AACAATGTTGTTTCG GCTTCGG AGA CCGATGC TTTCTATTTTCTCTT TERM 1729 1762421 - 1762397 - R 100 -12.9 -5.88565 | TTGATAACAAAAAAA GCTCTGATCGA AAA TCGAACAGAGC TGTACAGAAAAAAAC TERM 1730 1763271 - 1763250 - R 100 -13 -3.72363 | overlap 1763243 GACCGAAACGCGAAA GGGCTGGC ACACCG GCCAGCCC TTCAACTCAACAATT Cphamn1_1634 1764612 - 1763317 - | outer membrane efflux protein Cphamn1_1635 1767978 - 1764814 - | acriflavin resistance protein TERM 1731 1764963 - 1764951 - G 71 -6.9 -4.2558 | CATGGTTCAGCAAAA CCAGC AAA GCCGG GAGCATCACGAGAGT TERM 1732 1766340 - 1766330 - G 79 -5.4 -5.00884 | AGGTTCGGGAAAAAA GTCA GTT TGAC AATCCCGCCCTGCAA Cphamn1_1636 1769256 - 1768093 - | efflux transporter, RND family, MFP subunit TERM 1733 1768257 - 1768245 - G 71 -7.7 -4.0098 | CGCCAACCGAAACAA CTTCC ACC GGAAG CAGTATCACAACAGA TERM 1734 1768875 - 1768892 + g 73 -2.7 -5.00616 | GCATGAGCAATGTCA GTTCATT GAGT AATGCAC TTTTTTCAGCCAGAA Cphamn1_1637 1769745 - 1769269 - | transcriptional regulator, MarR family Cphamn1_1638 1770283 - 1769867 - | NUDIX hydrolase Cphamn1_1639 1770501 - 1771478 + | Nucleotidyl transferase TERM 1735 1772205 - 1772176 - g 100 -10.7 -5.40072 | GCGCTGGTAAAAAAA CTTGCTGACATCC GCAA GGAAGGCAGCAAG ATGACCTATCTTCGC Cphamn1_1640 1771705 - 1772922 + | Methionine adenosyltransferase TERM 1736 1772924 - 1772908 - f 73 -2.9 -5.06451 | GACGAGCTGAAAAAA GCCTTCA ACG TGTAAGC AGATATTTTAAAGGG TERM 1737 1773252 - 1773298 + G 74 -10.1 -3.64703 | gap 1, opp_overlap 1773254 GCAACATTTTTTCAA CACAGGACCATGCTGCAGCTGC CATT GCCGCTGCGG-GCGTTCCTGTG TTTGCCTGGAAAGGG Cphamn1_1641 1772990 - 1774408 + | adenosylhomocysteinase TERM 1738 1774436 - 1774464 + F 100 -17.6 -5.02074 | opp_overlap 1774436, overlap 1774440 ACAGAACAGAAAAAA GAAAGGCAGCCT TTTTC AGGCTGCCTTTC TTTTTTCACCGATCA TERM 1739 1774464 - 1774436 - f 100 -17.6 -5.53436 | opp_overlap 1774436 1774440 ACAGAACAGAAAAAA GAAAGGCAGCCT TTTTC AGGCTGCCTTTC TTTTTTCACCGATCA TERM 1740 1774440 - 1774460 + F 100 -12.6 -5.04249 | opp_overlap 1774436, overlap 1774436 AACAGAAAAAAGAAA GGCAGCCT TTTTC AGGCTGCC TTTCTTTTTTCACCG Cphamn1_1642 1774741 - 1775394 + | Phosphoribosylanthranilate isomerase Cphamn1_1643 1776285 - 1775389 - | alpha/beta hydrolase fold TERM 1741 1775477 - 1775496 + g 79 -5 -5.0538 | opp_overlap 1775465 AGATGCCCGCATTGC GGGACATT GACG AATATCCC TTTTTTGCAGTGCCC TERM 1742 1775586 - 1775574 - G 76 -5.5 -4.78572 | opp_overlap 1775574 CCGCAACGAACAAAA CCGGA ACC TCCAG TTCTTCAACCAGATC Cphamn1_1644 1776557 - 1776991 + | protein tyrosine phosphatase TERM 1743 1777754 - 1777728 - T 100 -12.3 -5.76949 | gap 1, opp_overlap 1777730 CATCCTGAAAAAAAA CAGGCCCGCCGG AACA CCGG-GAGCCTG TCGTGAAGACTACTT Cphamn1_1646 1778282 - 1777782 - | Rubrerythrin TERM 1744 1778340 - 1778321 - R 74 -3.6 -5.1356 | TGTTATTAATAAAAA CTCATC TCCAATTT GATGAG GTTGAGGTACATGGG Cphamn1_1647 1779161 - 1778358 - | putative adenylate/guanylate cyclase TERM 1745 1779454 - 1779407 - gH 76 -8.5 -3.9578 | overlap 1779411 ATACATGGCAAACAA CGCA-TGCCCTGAGGCTCGTGAC AGCA GTCGC-AGCCTCAAGGCCTTACG GCGGATCATCAGGGC TERM 1746 1779449 - 1779411 - gH 71 -10.3 -2.71369 | gap 1, overlap 1779407 ATGGCAAACAACGCA TGCCCTGAGGCTCGTGAC AGCA GTCGC-AGCCTCAAGGCC TTACGGCGGATCATC Cphamn1_1648 1779396 - 1779929 + | transcriptional regulator, MarR family Cphamn1_1649 1779886 - 1781199 + | lysine 2,3-aminomutase YodO family protein TERM 1747 1782291 - 1782278 - g 86 -3.1 -5.64274 | TCATCCAGAAAAAAA GACCT GGAA AAGTC AACACAATTCAGCTT TERM 1748 1782428 - 1782438 + G 82 -6.8 -4.82901 | GATTGTTCGTCCCGA CGCT GGG AGCG TTTTTCTGGAAAAAA TERM 1749 1782471 - 1782454 - g 70 -2.6 -5.00616 | TTTTTCTGGAAAAAA GGGTCC TCAATG GGAGCC CTGGCAGGAATGGCC Cphamn1_1650 1781209 - 1782660 + | SSS sodium solute transporter superfamily TERM 1750 1783056 - 1783044 - g 73 -5.5 -4.62069 | TCTCTACCTGAAAAA GTCAG TAT CCGAC AGTGCCGGGAAAACG Cphamn1_1651 1782666 - 1783502 + | GCN5-related N-acetyltransferase Cphamn1_1652 1783656 - 1784834 + | sodium/hydrogen exchanger Cphamn1_1653 1785154 - 1784915 - | hypothetical protein Cphamn1_1654 1785467 - 1785784 + | hypothetical protein TERM 1751 1785813 - 1785802 - T 70 -5.8 -4.30576 | opp_overlap 1785801, overlap 1785804 1785805 TGGCTACTATGAAAA CAGC TTAT GCTG CTTCATGAACCACCT Cphamn1_1655 1787158 - 1785806 - | multi antimicrobial extrusion protein MatE TERM 1752 1787392 - 1787372 - RH 71 -3.9 -4.87008 | overlap 1787382 1787383 AACACACAAAACAAA CCCTTATCA ATG CGACAGGGG AACTTGCCGCGGAAA Cphamn1_1657 1788046 - 1787585 - | DoxX family protein Cphamn1_1656 1787407 - 1787640 + | hypothetical protein Cphamn1_1658 1788809 - 1788051 - | Rhodanese domain protein Cphamn1_1659 1789042 - 1789485 + | hypothetical protein TERM 1753 1789741 - 1789757 + G 79 -5.1 -4.96028 | overlap 1789738 TTTGGCCTGTTCGGT GGCTG CTTCGGT CAGCC TTGTTTTTTTTCAGA Cphamn1_1660 1789691 - 1789963 + | hypothetical protein Cphamn1_1661 1790920 - 1790186 - | protein of unknown function DUF45 Cphamn1_1662 1792079 - 1790934 - | major facilitator superfamily MFS_1 TERM 1754 1791220 - 1791201 - G 70 -9.3 -3.63341 | AAGACCGGCCAATAA CTGCGGA TAACTG TCCGCAG AGCCTATCAAAAGAT TERM 1755 1791755 - 1791720 - G 91 -11.2 -4.17316 | gap 1, overlap 1791724 ATCTCCTGAAAACAA GTCACCTATGAGCGCGG TTG CCGCGCTCAT-GATACC CCCGACACCAATCCC TERM 1756 1791751 - 1791724 - G 77 -12.8 -2.75865 | gap 1, overlap 1791720 CCTGAAAACAAGTCA CCTATGAGCGCGG TTG CCGCGCTCAT-GA TACCCCCGACACCAA Cphamn1_1663 1793576 - 1792158 - | type I secretion membrane fusion protein, HlyD family TERM 1757 1793538 - 1793555 + g 73 -2.7 -4.97957 | gap 1, overlap 1793540 CTTGATAAACCTTCC GAGGCGTT CAA AGC-CCTC TTTTGTTCTTGTATC Cphamn1_1664 1795729 - 1793573 - | type I secretion system ATPase TERM 1758 1795396 - 1795372 - G 72 -8.6 -3.89346 | gap 1, overlap 1795380 CCTCTATTTCAGAAA CCGGAACACTC ACCG GAGCGT-CCGG CAGTTCCGAATAGGT TERM 1759 1795517 - 1795489 - G 100 -19 -4.90906 | opp_overlap 1795484 1795483 GCATAACAGGAAAAA GCGCCGGATTGA GAGAA TCAATCCGGCGC CTGACAATTTTGGTA Cphamn1_1665 1797186 - 1795768 - | type I secretion outer membrane protein, TolC family Cphamn1_1666 1801007 - 1797309 - | von Willebrand factor type A TERM 1760 1799468 - 1799446 - G 76 -5.4 -4.90079 | opp_overlap 1799448, overlap 1799448 ACCTTAATAATAAAA GTCCCTGCAG CAT CGACAGGGTC CTTGTCATAGTCAAA TERM 1761 1800299 - 1800279 - G 73 -3.2 -5.00616 | GTTTCCTTCAAAAAA GGTGTCGA TCGGC TCATCACC GGGAATTACAGAGAG TERM 1762 1801493 - 1801483 - H 72 -6.8 -4.19123 | GAGAAACCACAGAAA CAGC ACC GCTG TAATCCGCCCGTTAC TERM 1763 1801617 - 1801604 - H 77 -2.4 -5.40072 | CCCGGTTGAAAAAAA GAAC GCCGTT GTTC TGCTAAGCGCCGGAA Cphamn1_1667 1801729 - 1801914 + | hypothetical protein Cphamn1_1668 1802452 - 1802120 - | plasmid stabilization system Cphamn1_1669 1802727 - 1802449 - | prevent-host-death family protein TERM 1764 1803058 - 1803031 - R 100 -12.8 -4.1337 | overlap 1803036 GGATAGCAGAAATAA GAAAACCCTTGG TTTC CCAAGGGCTCTC GGACGTTTGCGGATT TERM 1765 1803053 - 1803036 - R 100 -11.3 -5.05116 | overlap 1803031 GCAGAAATAAGAAAA CCCTTGG TTTC CCAAGGG CTCTCGGACGTTTGC Cphamn1_1670 1804241 - 1803294 - | ADP-ribosylation/Crystallin J1 Cphamn1_1671 1807431 - 1804231 - | helicase domain protein TERM 1766 1804607 - 1804618 + g 84 -4.4 -5.24129 | GCTGTTAAACCATAG CGTT CTGC AACG TTTTTTCTGACAGCA Cphamn1_1672 1809238 - 1807424 - | hypothetical protein TERM 1767 1808426 - 1808440 + g 70 -2.1 -5.02074 | GAGACATTGTGTAAA GAGAT CGAGA GTCTC TTTTTTCAGGGCTGA TERM 1768 1809093 - 1809061 - G 79 -13.5 -2.71364 | overlap 1809069 GGATTGCTTCAAGTA CGGATAAAGGGTCAG GGT CTGACTCTCCATCCG CTGCCATTAGCGCCA Cphamn1_1673 1810461 - 1809232 - | hypothetical protein Cphamn1_1674 1811499 - 1810462 - | restriction endonuclease Cphamn1_1675 1813608 - 1811539 - | hypothetical protein TERM 1769 1812738 - 1812765 + g 73 -3.4 -4.98531 | gap 1, overlap 1812740 1812741 CCATGTAGTTCTTCA TGATGTCGACCAG GGC CTTGTCGACG-CG TTTTTGCTTTCCGGC Cphamn1_1676 1816121 - 1813623 - | PglZ domain protein TERM 1770 1814415 - 1814442 + g 72 -9.8 -3.41051 | gap 1 CCGCTCCTCGGATTC CCGC-TTGTCGCC GGT GGCGTCGATGCGG TTGTGGTAGACGTAG Cphamn1_1677 1819649 - 1816134 - | hypothetical protein Cphamn1_1678 1820178 - 1819654 - | hypothetical protein TERM 1771 1819775 - 1819794 + g 70 -8.6 -3.66378 | TGCCAGCGAGGTGAG CTCTTTCC AGAT GGAGAGAG TTTGCCTGCAATCTC Cphamn1_1679 1821230 - 1820175 - | hypothetical protein Cphamn1_1680 1824838 - 1821227 - | hypothetical protein TERM 1772 1823135 - 1823119 - G 91 -10.9 -4.57569 | TGACGTGGTCAAAAA CGAGCTT CTC AAGCTCG GCGGAAACGTCTGAC TERM 1773 1824254 - 1824268 + g 70 -4.2 -4.67556 | overlap 1824243 TTTCGCCTCCAGCAG GGCC TGTTCGC GGCC TTTTTGCCATGTTCT Cphamn1_1681 1825443 - 1824853 - | Domain of unknown function DUF1788 Cphamn1_1682 1826075 - 1825461 - | Protein of unkown function DUF1819 putative inner membrane Cphamn1_1683 1826276 - 1826082 - | DNA binding domain protein, excisionase family TERM 1774 1826180 - 1826192 + g 73 -10.5 -3.1876 | GGCCGACACGATGAC CGGGC ATA GCCCG TTGCTCGATCCACTT Cphamn1_1684 1826952 - 1826395 - | AIG2 family protein TERM 1775 1826886 - 1826917 + g 76 -8.6 -4.22041 | opp_overlap 1826886 1826887, overlap 1826887 TGCCGTAGACGAAGA GCCGGAGGTTGGTC TCGG GACTGTCCTCCGGG TTTGTGTTCAGCTTT TERM 1776 1826887 - 1826916 + g 77 -12.1 -3.1214 | opp_overlap 1826887 1826886, overlap 1826886 GCCGTAGACGAAGAG CCGGAGGTTGGTC TCGG GACTGTCCTCCGG GTTTGTGTTCAGCTT Cphamn1_1685 1827746 - 1826949 - | glucosamine 6-phosphate synthetase-like protein Cphamn1_1686 1827892 - 1827731 - | hypothetical protein TERM 1777 1827947 - 1827992 + H 100 -18.6 -4.56607 | gap 1, opp_overlap 1827952, overlap 1827952 AACAAGGGGAAAAAA GA-AAACCCGTCTACCCAGAG CATCA CTCTGAGTAGACGGGTTTGTC TTTTCTAATTGGTGG TERM 1778 1827952 - 1827986 + H 100 -18.7 -4.52142 | opp_overlap 1827952, overlap 1827947 GGGGAAAAAAGAAAA CCCGTCTACCCAGAG CATCA CTCTGAGTAGACGGG TTTGTCTTTTCTAAT TERM 1779 1827986 - 1827952 - H 100 -21.6 -5.42198 | opp_overlap 1827947 1827952 GGGGAAAAAAGAAAA CCCGTCTACCCAGAGC ATC ACTCTGAGTAGACGGG TTTGTCTTTTCTAAT TERM 1780 1828519 - 1828508 - g 74 -2.2 -5.07486 | CATGCTCAAGAAAAA GCTG AAAA CAAC CAGAGTACTGCTATG Cphamn1_1687 1828494 - 1828586 + | hypothetical protein Cphamn1_1688 1829161 - 1828598 - | protein of unknown function DUF179 Cphamn1_1689 1829635 - 1829165 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Cphamn1_1690 1829890 - 1830444 + | NUDIX hydrolase Cphamn1_1691 1830564 - 1830968 + | conserved hypothetical protein, possilbly involved in molybdenum cofactor biosynthesis TERM 1781 1831041 - 1831067 + T 77 -10.3 -3.54935 | gap 1 GGTCTCACACGCCAT CAG-GCTTTCTG CTTG CAGAAAGCGCTG TTTGAAGGGAATTTC Cphamn1_1692 1832241 - 1831030 - | MscS Mechanosensitive ion channel TERM 1782 1831701 - 1831717 + g 78 -9.5 -3.92869 | opp_overlap 1831704, overlap 1831704 TTTCGATCCAGTCAC CAACCTT TAC AAGGTTG TTTGTGGATAGCTGA TERM 1783 1832054 - 1832044 - G 76 -3.2 -5.14563 | GCTTTGAGGAAAAAA CTGC AGA ACAG GAACCGCAAGGTTAT Cphamn1_1693 1834215 - 1832389 - | multi-sensor signal transduction histidine kinase TERM 1784 1833172 - 1833182 + g 76 -6.8 -4.44797 | CATCACAAAAACCGT TCCC TCA GGGA TTTTCCTCTTGATAA TERM 1785 1833648 - 1833636 - G 70 -2.6 -4.96848 | GCCTTGAGAGAAAAA GCGC GGTAA GCAC ACCGAAAACAAGAGA TERM 1786 1834127 - 1834110 - G 74 -7 -4.40804 | TACCATCGTAGAAAA GCGAAC GCAGAT GTTCGC CAAGATAGAAGTAGC Cphamn1_1694 1834912 - 1834202 - | two component transcriptional regulator, winged helix family Cphamn1_1695 1836148 - 1835180 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 1787 1837582 - 1837566 - g 86 -3 -5.61596 | gap 1, opp_overlap 1837566 1837567, overlap 1837568 1837581 AGTCTCATAAAAAAA GA-GCCT TTAA AGGCATC TCTCTCAAAGACCTC TERM 1788 1837579 - 1837568 - g 73 -5.8 -4.45201 | opp_overlap 1837567 1837566, overlap 1837566 TCTCATAAAAAAAGA GCCT TTAA AGGC ATCTCTCTCAAAGAC Cphamn1_1696 1836353 - 1839676 + | transcription-repair coupling factor TERM 1789 1840442 - 1840477 + F 93 -11.9 -3.82433 | opp_overlap 1840445, overlap 1840445 1840447 TCCATGAAACTTCAA AAACACGTTCCGGTG AATTGA CACCGGAACGTGTCG TTTCATAGTGATTAT TERM 1790 1840474 - 1840445 - f 100 -18 -4.71482 | opp_overlap 1840445 1840442 1840447 ATGAAACTTCAAAAA CACGTTCCGGTG AATTGA CACCGGAACGTG TCGTTTCATAGTGAT TERM 1791 1840445 - 1840474 + F 100 -18 -2.98761 | opp_overlap 1840445, overlap 1840442 1840447 ATGAAACTTCAAAAA CACGTTCCGGTG AATTGA CACCGGAACGTG TCGTTTCATAGTGAT TERM 1792 1840447 - 1840472 + F 89 -14.8 -3.04415 | opp_overlap 1840445, overlap 1840445 1840442 GAAACTTCAAAAACA CGTTCCGGTG AATTGA CACCGGAACG TGTCGTTTCATAGTG Cphamn1_1698 1840598 - 1841278 + | ferredoxin Cphamn1_1699 1841351 - 1842046 + | succinate dehydrogenase and fumarate reductase iron-sulfur protein Cphamn1_1700 1842109 - 1843329 + | alanine dehydrogenase/PNT domain protein TERM 1793 1843371 - 1843381 + T 74 -2.4 -5.17744 | opp_overlap 1843370, overlap 1843370 CTACAGATAATCCAG AGGG TTC CCCA TTTTTCTTGCTATAT Cphamn1_1701 1844867 - 1843356 - | amine oxidase TERM 1794 1844740 - 1844760 + g 95 -6.2 -5.41143 | gap 1, opp_overlap 1844740 1844742 TGCCTGAATGAAGCA CAGCT-TCC ACCG GGATAGCTG TTTTTTTCAAGCGTA Cphamn1_1702 1845001 - 1845636 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 1795 1845625 - 1845615 - f 71 -4.6 -4.71223 | GTACAACACAGAAAA CGAG GAA CCCG GGGAACAGTAACACA Cphamn1_1703 1845665 - 1845892 + | putative transmembrane anti-sigma factor Cphamn1_1704 1846070 - 1846447 + | transcriptional regulator, ArsR family Cphamn1_1705 1846665 - 1846408 - | hypothetical protein Cphamn1_1706 1847452 - 1847850 + | heat shock protein Hsp20 TERM 1796 1848336 - 1848320 - g 76 -5.1 -4.82901 | overlap 1848321 TTTCTTGGAGAAAAA GTAACCG AAG CGGTTAT CACGGTGCCTGCATA TERM 1797 1848499 - 1848485 - g 76 -2.8 -5.13016 | AATGAAAACGAAAAA GTCG CCGTATT CGAC CTGGGTGGCGGAACG TERM 1798 1849564 - 1849550 - g 70 -2.1 -5.00895 | TTCAGTACAGAAAAA CAGCT TGGCG AACTG GGAGACAAAGTTCCT Cphamn1_1707 1847927 - 1849855 + | chaperone protein DnaK TERM 1799 1849886 - 1849904 + F 100 -11.8 -5.65927 | opp_overlap 1849886 ACTACCAATAAAAAA GGGATTCA TGT TGAATCCC TTTTTTATTTACCTC TERM 1800 1849904 - 1849886 - f 100 -11.8 -5.52023 | opp_overlap 1849886 ACTACCAATAAAAAA GGGATTCA TGT TGAATCCC TTTTTTATTTACCTC TERM 1801 1849946 - 1849962 + G 70 -2.9 -4.86862 | overlap 1849948 CTTGATTAATAGGTT TACCATC CAT GCTGGTG TTTTAATTTTTTGCA Cphamn1_1708 1849893 - 1850378 + | hypothetical protein TERM 1802 1850391 - 1850416 + T 73 -10.5 -3.05844 | gap 1 TAACTCTCCGACTTA T-TCCGGGGCTT TCA AGGCCCCGGACA TCTTGACATACCCGC TERM 1803 1850515 - 1850496 - T 100 -8.5 -5.4505 | CTCTCCAATAAAAAA CCCGGGC TGAATG ACCCGGG CCTGTAACGCATGAC Cphamn1_1709 1851355 - 1850552 - | tol-pal system protein YbgF Cphamn1_1710 1851890 - 1851414 - | peptidoglycan-associated lipoprotein TERM 1804 1852283 - 1852239 - R 100 -16.8 -4.40894 | gap 1 GAAACCACACGAAAA CCTTTTA-CCGCAGCATACAG AGAA CTGTATGCTGCAGATAAAAAG GAATAAGAGCCCGAT Cphamn1_1711 1853833 - 1852499 - | WD40 domain protein beta Propeller Cphamn1_1712 1854845 - 1854003 - | hypothetical protein TERM 1805 1854324 - 1854350 + g 73 -11.5 -2.89191 | overlap 1854323 GTACTCCCCGTCACC CGGACCGGACC GTCCA GGACCGGTTCG TGTATACAGATCTGA Cphamn1_1713 1855300 - 1854890 - | Biopolymer transport protein ExbD/TolR TERM 1806 1855095 - 1855062 - G 95 -11.9 -4.13767 | GGCGCGAGCTGAAAA GCGTTGATAAAAACC TGAC GTTTTTCATCAACGC TGACAATGAGTGCCT Cphamn1_1714 1855949 - 1855287 - | protein TolQ Cphamn1_1715 1857514 - 1855985 - | protein of unknown function DUF92 transmembrane TERM 1807 1857240 - 1857262 + g 70 -2.7 -4.76312 | gap 1, opp_overlap 1857247, overlap 1857243 ACCGGCCCGTAACCG GATGC-AAGG CCAT CCTTCGCCTC TTTTTCGCTCTTGTC TERM 1808 1857367 - 1857349 - G 79 -8.2 -4.42238 | TCACCCCAAGCAAAA CCGGATAA AAA TTATCCAG GAAACAGACGGGAAG TERM 1809 1858195 - 1858180 - g 91 -3.2 -5.69473 | GATACCATAAAAAAA GGGTTT GAAA AAGCCC CCCACAGAAGCCTTC Cphamn1_1716 1858120 - 1859859 + | dihydroxy-acid dehydratase TERM 1810 1860911 - 1860891 - g 76 -8.3 -4.27686 | opp_overlap 1860891, overlap 1860882 1860892 GAAAACGAGGGAAAA CCGTCAAGC GTG GCTTGACAA GATTGCTCAATGGCA TERM 1811 1861409 - 1861399 - g 74 -8.2 -4.07568 | overlap 1861384 GCTTTCGGCGTAAAA GCGC TCA GCGC AGGCAATCCGGCTGA TERM 1812 1861448 - 1861435 - g 70 -3.1 -4.87665 | gap 1, overlap 1861444 GCTGAGGCAGAAAAA GCCGTC AAA GA-GGC ACTTGCCTACAATGA Cphamn1_1717 1859884 - 1861584 + | acetolactate synthase, large subunit, biosynthetic type Cphamn1_1718 1861593 - 1862072 + | acetolactate synthase, small subunit Cphamn1_1719 1862116 - 1863108 + | ketol-acid reductoisomerase TERM 1813 1863387 - 1863376 - g 100 -7.2 -5.52384 | TCCCCACGAAAAAAA GCCG GAAG CGGC ACTACTCAAGATCCG TERM 1814 1863443 - 1863427 - g 70 -8.7 -3.53012 | opp_overlap 1863427 CGGCCTGTTTGCAAA CCTTCGC CCT GCGAAAG TTTACGATGCACTTA TERM 1815 1863495 - 1863479 - g 85 -12.3 -3.65351 | GCATCCTCACTCAAA CCGGAGA TCC TCTCCGG AACAGACTTCATGGT Cphamn1_1720 1863119 - 1864180 + | 3-isopropylmalate dehydrogenase TERM 1816 1864415 - 1864400 - g 72 -4 -4.83593 | gap 1, overlap 1864405 AAGAATCAGGAAAAA CAGTAGC CGC GCT-CTG CAGGGCCATGGAGCA Cphamn1_1721 1864198 - 1865766 + | 2-isopropylmalate synthase TERM 1817 1866997 - 1866986 - g 90 -5.8 -5.27477 | opp_overlap 1866985, overlap 1866987 ATGGGAAGCAAAAAA GCAG GCGT CTGC CTCGCTTCACCGCTC Cphamn1_1722 1865774 - 1867072 + | homoaconitate hydratase family protein Cphamn1_1723 1867117 - 1867680 + | aconitate hydratase domain protein TERM 1818 1867976 - 1867962 - g 79 -7.8 -4.4727 | overlap 1867972 TCAACAGCGAGAAAA CCGGAC AAC ATCCGG AACGACCCGAACCTC TERM 1819 1868146 - 1868161 + G 100 -7.6 -5.41143 | opp_overlap 1868145 AGGGCCGGGAAGTAC TGTTCG ATGC CGAACA TTTTTTTGACGGCTA TERM 1820 1868961 - 1868951 - g 86 -8.2 -4.59853 | overlap 1868940 CGAATCCGGTAAAAA CCGG GAA CCGG TTGACCAGGCAATTC Cphamn1_1724 1867716 - 1869329 + | 2-isopropylmalate synthase/homocitrate synthase family protein TERM 1821 1869376 - 1869415 + F 71 -9.2 -3.38361 | opp_overlap 1869388, overlap 1869377 1869387 TGTACATCCCCGTAC AGGGCCTGAAAAGCAACG ATAG CGTTGCCTTTCCGACCCC TTCCTGTTCCGCTTT TERM 1822 1869377 - 1869414 + F 81 -12.7 -2.62293 | opp_overlap 1869388, overlap 1869376 1869387 GTACATCCCCGTACA GGGCCTGAAAAGCAACG ATAG CGTTGCCTTTCCGACCC CTTCCTGTTCCGCTT TERM 1823 1869403 - 1869388 - f 80 -9 -4.09243 | opp_overlap 1869387 1869377 1869376 TACAGGGCCTGAAAA GCAACG ATAG CGTTGC CTTTCCGACCCCTTC TERM 1824 1870013 - 1870000 - g 86 -6.7 -4.98758 | AAAAAGCGAGAAAAA CCATC AACA GATGG GCGGAACAAAGAACC Cphamn1_1725 1869447 - 1870742 + | proteinase inhibitor I4 serpin Cphamn1_1726 1870781 - 1871338 + | Exonuclease RNase T and DNA polymerase III TERM 1825 1871398 - 1871414 + T 85 -7.9 -4.63218 | opp_overlap 1871398 GCGGGCAAAAAAAAA GCGGCCT TGC AGACCGC TTTTCTTCGAGCAGG TERM 1826 1871414 - 1871398 - T 100 -10.1 -6.06723 | opp_overlap 1871398 GCGGGCAAAAAAAAA GCGGCCT TGC AGACCGC TTTTCTTCGAGCAGG Cphamn1_1727 1872722 - 1871679 - | Agmatine deiminase TERM 1827 1871774 - 1871750 - G 75 -10.8 -3.34013 | GATCGGTGCAATCAA TTCCCGTCAC CTCCC GTGACGGAAA GCATCGGGCAAGGAT Cphamn1_1728 1873975 - 1872728 - | Ste24 endopeptidase TERM 1828 1873201 - 1873223 + g 70 -9.2 -3.60151 | opp_overlap 1873187 1873201 1873213 1873214 AGTGGTTCTCGACAA GCGTATCG AAAAGCG CGATACGC TTCTGCTTTCCAAAA Cphamn1_1729 1874822 - 1874544 - | hypothetical protein Cphamn1_1730 1876052 - 1874883 - | Na+/Picotransporter Cphamn1_1731 1876968 - 1876099 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 1829 1876610 - 1876594 - G 74 -6.5 -4.39002 | opp_overlap 1876605, overlap 1876595 1876596 AAACTTCTCATAAAA CCCCGGA TCA TCCGGAA TGTGCATCTTCCGGT Cphamn1_1732 1877902 - 1876973 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 1830 1877052 - 1877027 - G 73 -3.1 -5.04249 | CGCTGAAAAAAGAAA CCCGTAGAGCG TCAT CACCCTGCCGG TACCGGCAAGAACAG Cphamn1_1733 1878945 - 1877899 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1831 1878918 - 1878934 + g 70 -2.2 -4.95484 | opp_overlap 1878924, overlap 1878919 ACAGTTCGTCCTGTC CGGAAA CAGAA TCTCCG TTTTCTTTCATGGTG Cphamn1_1734 1879311 - 1878985 - | hypothetical protein Cphamn1_1735 1879557 - 1880312 + | imidazoleglycerol phosphate synthase, cyclase subunit TERM 1832 1880313 - 1880343 + T 89 -12.1 -3.68302 | gap 1, opp_overlap 1880315 1880320, overlap 1880315 1880320 GAAGTCAGACTGTAA C-ATAAAAGCCCGA CCGG TCGGGCTTTTATCG TTGTTGAACTGTTGA TERM 1833 1880315 - 1880340 + T 89 -14.9 -2.94313 | opp_overlap 1880315 1880320, overlap 1880313 1880320 AGTCAGACTGTAACA TAAAAGCCCGA CCGG TCGGGCTTTTA TCGTTGTTGAACTGT TERM 1834 1880340 - 1880315 - T 89 -14.9 -3.0814 | opp_overlap 1880315 1880313 1880320, overlap 1880320 AGTCAGACTGTAACA TAAAAGCCCGA CCGG TCGGGCTTTTA TCGTTGTTGAACTGT TERM 1835 1880335 - 1880320 - T 91 -10.4 -4.67608 | opp_overlap 1880320 1880315 1880313, overlap 1880315 GACTGTAACATAAAA GCCCGA CCGG TCGGGC TTTTATCGTTGTTGA TERM 1836 1880320 - 1880335 + T 91 -10.4 -4.61747 | opp_overlap 1880315 1880320, overlap 1880315 1880313 GACTGTAACATAAAA GCCCGA CCGG TCGGGC TTTTATCGTTGTTGA TERM 1837 1880580 - 1880560 - T 74 -3.3 -5.12707 | opp_overlap 1880564, overlap 1880564 GCAAAGGTCAAAAAA TGGATCT CCGGTTC AGACCCA GAGATGACTTAGCAC Cphamn1_1736 1881098 - 1880739 - | hypothetical protein Cphamn1_1737 1881776 - 1881267 - | NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 TERM 1838 1882058 - 1882070 + G 79 -6.9 -4.63486 | ACATGGTCATCATCG GCGTC ATC GGCGC TTTTCTTGCAGCAAT TERM 1839 1882177 - 1882187 + G 73 -5.4 -4.65916 | AAGGGCTCGAAATCC CTGA TGC TCAG TTTTGTTGAAATCGC Cphamn1_1738 1882015 - 1882503 + | hypothetical protein Cphamn1_1739 1883028 - 1882723 - | Rieske (2Fe-2S) domain protein Cphamn1_1740 1884147 - 1883083 - | magnesium and cobalt transport protein CorA Cphamn1_1741 1885175 - 1884195 - | hypothetical protein Cphamn1_1742 1886716 - 1885739 - | Na+/Ca+ antiporter, CaCA family Cphamn1_1743 1887204 - 1887040 - | hypothetical protein TERM 1840 1887111 - 1887122 + g 81 -5.8 -5.03314 | TCGCGATAGTGCTGC CTCC TCTT GGAG TTTTTTCCAGGTCGG TERM 1841 1887329 - 1887351 + G 70 -9 -3.57144 | GGGTCAACACATTCA GTCCACCCCC TGA GTGGGAGGAC TTTCACAGTCGCCAG TERM 1842 1887433 - 1887412 - g 74 -2.2 -5.06816 | overlap 1887419 ACTCCTGAAGAAAAA GCCGAAAG GCTCCG CTTGCAGC AGGAAGCCTCAGAGA Cphamn1_1744 1887247 - 1887717 + | hypothetical protein Cphamn1_1745 1887733 - 1888740 + | adenosine deaminase Cphamn1_1746 1888755 - 1889273 + | hypoxanthine phosphoribosyltransferase TERM 1843 1890661 - 1890646 - g 100 -3.2 -6.15717 | CAAACAGAAAAAAAA GCGG CCTTTCAT CCGC TGAACTGATGAACAT Cphamn1_1747 1889571 - 1890722 + | pyruvate carboxyltransferase TERM 1844 1890845 - 1890820 - g 75 -9.1 -3.86015 | gap 1, opp_overlap 1890810, overlap 1890804 1890801 CATGGTGCTGAGAAA TGTGCTCAG-CA TCA TGTCCGAGCACA TGAATATCATTCGCG TERM 1845 1891066 - 1891027 - g 79 -13 -3.18033 | gap 1, overlap 1891025 1891060 GAGAATTGACGAAGA GCCCCAGTTTCTTGA-CCG TAC CGGCTCAAGAAACCGGATC AATACGGAACATCTC Cphamn1_1748 1890719 - 1892347 + | transcriptional regulator, NifA, Fis Family TERM 1846 1892452 - 1892434 - T 73 -10.3 -3.11182 | overlap 1892432 1892431 GTGAAGAAAGAAGGA TGCCGCA TCAAG TGCGGCA TGACTGGTGATTGGT Cphamn1_1749 1892832 - 1892584 - | hypothetical protein Cphamn1_1750 1893290 - 1892889 - | large conductance mechanosensitive channel protein TERM 1847 1892954 - 1892975 + g 83 -5.1 -5.08255 | CTTTAGAGGGACCCG GAGGAGTTT TCGG AGCCTCCTC TTTTCTTTTCAGGCT TERM 1848 1894509 - 1894489 - g 83 -5.4 -5.16206 | gap 1 AAATCAACAGAAAAA CCGTGATCG ATTT CGACC-CGG CGCATCAGCAGGCGG Cphamn1_1751 1893816 - 1894640 + | nitrogenase iron protein TERM 1849 1894724 - 1894704 - g 72 -9.7 -3.35344 | opp_overlap 1894712 GCCAAAGCACATCAA GTCATGCAG GGT CTGCTTGAC GCAGGATACCCTGCT Cphamn1_1752 1894659 - 1895015 + | nitrogen regulatory protein P-II Cphamn1_1753 1895015 - 1895392 + | nitrogen regulatory protein P-II TERM 1850 1895996 - 1895972 - g 72 -8.6 -3.92522 | gap 1 TGTGAAGGCTACAAA GGTGTC-AGCC AGTC GGCCGGACACC ATATCGCCAATAACC Cphamn1_1754 1895417 - 1897039 + | nitrogenase molybdenum-iron protein alpha chain TERM 1851 1897068 - 1897042 - f 74 -10.2 -3.22777 | gap 1, overlap 1897040 TGTCACACAGTAACA CTGGACCGGGC GCAGAA GCCCGGTC-AG AAACAAAACGGAACG TERM 1852 1898254 - 1898242 - g 76 -3.3 -5.15634 | CAGTGGATCAAAAAA GAACC TGT GGATC TGCTGATCGGCAATA Cphamn1_1755 1897087 - 1898469 + | nitrogenase molybdenum-iron protein beta chain TERM 1853 1899415 - 1899402 - g 70 -3.1 -4.75372 | ATGATGGAGGAAAAA TACGG CATT CCATA CATGAGAGTATCGTA Cphamn1_1756 1898628 - 1899989 + | nitrogenase MoFe cofactor biosynthesis protein NifE TERM 1854 1900689 - 1900677 - g 100 -10.5 -4.91109 | GCGCGATCAGAAAAA GCGGC AAG GCCGC TGCAAGTCTGGAATT Cphamn1_1757 1899986 - 1901359 + | Nitrogenase TERM 1855 1902229 - 1902217 - g 70 -9.1 -3.58231 | AAAGAACTGATAGAA GCAGC GAA GCTGC CGAAGAATCCATCGG Cphamn1_1758 1901371 - 1902645 + | nitrogenase cofactor biosynthesis protein NifB Cphamn1_1759 1902796 - 1903107 + | ferredoxin, 2Fe-2S TERM 1856 1903139 - 1903162 + T 87 -14 -2.84955 | opp_overlap 1903139 1903145, overlap 1903145 TCTAAAGCATAGAGA GAAAAAGGGC TCCG GCCCTTTTTC TATGGTAATCGTTAT TERM 1857 1903162 - 1903139 - T 87 -14 -3.08344 | opp_overlap 1903139 1903145, overlap 1903145 TCTAAAGCATAGAGA GAAAAAGGGC TCCG GCCCTTTTTC TATGGTAATCGTTAT TERM 1858 1903156 - 1903145 - T 86 -7.2 -5.07275 | opp_overlap 1903145 1903139, overlap 1903139 GCATAGAGAGAAAAA GGGC TCCG GCCC TTTTTCTATGGTAAT TERM 1859 1903145 - 1903156 + T 84 -7.2 -5.01497 | opp_overlap 1903139 1903145, overlap 1903139 GCATAGAGAGAAAAA GGGC TCCG GCCC TTTTTCTATGGTAAT Cphamn1_1760 1905359 - 1903344 - | histidine kinase Cphamn1_1761 1906521 - 1905484 - | hydrogenase expression/formation protein HypE Cphamn1_1762 1907615 - 1906512 - | hydrogenase expression/formation protein HypD Cphamn1_1763 1907931 - 1907704 - | hydrogenase assembly chaperone hypC/hupF Cphamn1_1764 1910480 - 1908177 - | (NiFe) hydrogenase maturation protein HypF TERM 1860 1909581 - 1909592 + gr 80 -2.2 -5.4505 | gap 1, opp_overlap 1909581 TATCTCCTCCGAAAG GC-CG TGA CGTGC TTTTTTCTTCAAGAG TERM 1861 1910171 - 1910146 - GR 79 -11.9 -2.7555 | gap 1, overlap 1910156 CACATGGCAATATCA GGGGCGACA-AG CGT CTCTGCCGCCCC CTCATCATCCGATGA Cphamn1_1765 1911235 - 1910441 - | hydrogenase accessory protein HypB Cphamn1_1766 1912219 - 1911878 - | hydrogenase nickel insertion protein HypA TERM 1862 1912518 - 1912539 + G 74 -3.7 -5.02476 | gap 1, opp_overlap 1912502, overlap 1912518 TCCCCGCACACTTCA GG-GAAAACG TAT CGTTCTCGCC TTTTTTGAGAACTCT Cphamn1_1767 1912276 - 1913325 + | aspartate carbamoyltransferase TERM 1863 1913449 - 1913430 - f 75 -5 -4.87786 | GTAACGCCATAAAAA CTCTTCAC TCAT GCGAAAAG GATATATCCCGCTGA Cphamn1_1768 1913440 - 1914294 + | hypothetical protein TERM 1864 1914353 - 1914367 + F 71 -8.6 -3.45405 | opp_overlap 1914348 1914347, overlap 1914347 CAGACAAAAGCAACT TCCTCA CCA TGAGGA TCTTGATTTTATGAG TERM 1865 1914388 - 1914413 + F 80 -6.4 -4.83243 | ATTTTATGAGCTTGA TTAAAAAAAG TAACTT CTTTTTTTAA TTTCTTTTATGTAAG TERM 1866 1914483 - 1914494 + F 70 -3 -4.89477 | overlap 1914489 TGTTCTTTTCCTGCT CAAT ACGC ATTG TTTTGTTGTTGAACG TERM 1867 1914728 - 1914700 - g 78 -3.7 -5.0916 | overlap 1914701 TGTCCAAGAGAAAAA CTTCGGCGTTGAG GAT CCCGCCACCGAAA ACCTTTACTGGCTTT Cphamn1_1769 1914569 - 1915639 + | hypothetical protein TERM 1868 1915672 - 1915691 + F 100 -13.6 -5.8187 | GTAACAAGTTTCCAG GCCGCAGT TTAC ACTGCGGC TTTTTTTATTGCATC TERM 1869 1915811 - 1915827 + F 82 -8.1 -4.52589 | CTTAAATTGTGGCAA GTCTTTT TGA AAAAGAC TTTTGTCTCAACAAA Cphamn1_1770 1915859 - 1916134 + | hypothetical protein Cphamn1_1771 1916182 - 1917951 + | Na+/solute symporter TERM 1870 1917977 - 1917995 + F 100 -14.6 -5.72053 | opp_overlap 1917977 GACATGTAGTAAAAA GGCGCGAA GTT TTCGCGCC TTTTTTATTTACTTC TERM 1871 1917995 - 1917977 - f 100 -14.6 -4.76041 | opp_overlap 1917977 GACATGTAGTAAAAA GGCGCGAA GTT TTCGCGCC TTTTTTATTTACTTC Cphamn1_1772 1918096 - 1919982 + | excinuclease ABC, C subunit Cphamn1_1773 1920149 - 1921549 + | Tetratricopeptide TPR_2 repeat protein Cphamn1_1774 1921568 - 1922449 + | shikimate 5-dehydrogenase Cphamn1_1775 1922605 - 1923084 + | lipoprotein signal peptidase Cphamn1_1776 1923109 - 1923900 + | hydrolase, TatD family TERM 1872 1924268 - 1924254 - f 70 -6.4 -4.26924 | overlap 1924251 AAGATGAACAAATAA TCCACC TGT GATGGA ACAGTATCCGCCTGT TERM 1873 1924905 - 1924869 - g 78 -2.1 -5.3236 | overlap 1924870 1924872 AGAAGTCATAAAAAA GTATCCCGGTCTGGCCG GTG CGGCAAAATCGGAAGAA TCCCTGCTCGCTCTC Cphamn1_1777 1924264 - 1924950 + | Tetratricopeptide domain protein TERM 1874 1925205 - 1925193 - f 85 -7.7 -4.614 | opp_overlap 1925192 GGGAATGACAGAAAA GGGAA AGT TTCCC ATCCTTGTAAGCACT Cphamn1_1778 1925281 - 1925775 + | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 1875 1925829 - 1925810 - g 70 -8.6 -3.76534 | GCAATAAACCTCAAA CGGATCTC TGAT GAAATCCG TGCAACCTGTAACAG Cphamn1_1779 1925783 - 1926472 + | alanine racemase domain protein TERM 1876 1926552 - 1926572 + G 71 -7.5 -3.97926 | overlap 1926548 1926554 AAATTCGGGATCAGG AGGCCTCCT GGC AGGAGGCTG TTCTCTTTATGTTGT TERM 1877 1926554 - 1926570 + G 82 -12.3 -3.55789 | overlap 1926552 1926548 ATTCGGGATCAGGAG GCCTCCT GGC AGGAGGC TGTTCTCTTTATGTT Cphamn1_1780 1926500 - 1926604 + | hypothetical protein Cphamn1_1781 1926854 - 1928071 + | aminotransferase class I and II TERM 1878 1928880 - 1928862 - g 71 -6.8 -4.21974 | TCAGCATTGAAGAAA TCATTGAA GTA TCCAATGA AGCTGAGCCGAAAAT Cphamn1_1782 1928111 - 1928932 + | purine nucleoside phosphorylase I, inosine and guanosine-specific Cphamn1_1783 1928969 - 1930030 + | translation initiation factor, aIF-2BI family Cphamn1_1784 1930146 - 1930027 - | hypothetical protein TERM 1879 1930053 - 1930083 + g 100 -14.8 -4.45068 | opp_overlap 1930058 CAAGCATTTTCTCCA GAGCATCCTGTTGG CCT TCATCAGGATGCTC TTTGTTGTTCCGCAT Cphamn1_1785 1930190 - 1930609 + | Hpt protein TERM 1880 1931428 - 1931412 - g 74 -6.5 -4.3586 | GTACTGATAGGAAAA GCCGCTC AAA AAGCGAC GCAAAAACAGTGGGA TERM 1881 1931780 - 1931763 - g 79 -8.5 -4.3739 | CAGCTCGGCACAAAA TTCCATG CCGG CATGGAA GGAGTCAGCGCAGCA TERM 1882 1932545 - 1932568 + G 71 -5.2 -4.56597 | opp_overlap 1932545 1932565, overlap 1932543 ACAGTCCGGCACACA CCTCTCGCTT ATGC AAGAGAGTGG TTTTTACCGCGACGC Cphamn1_1786 1930875 - 1932617 + | ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD TERM 1883 1933570 - 1933539 - g 70 -4.4 -4.7373 | gap 1, opp_overlap 1933560 1933561 CGACCGCAGGAAAAA GGCTGTTTG-ACATC GTA GATGCGCAACCGGCC GTAACCGCACCGGTT TERM 1884 1933614 - 1933631 + G 73 -5.5 -4.60949 | overlap 1933627 TTCCCGAATCCAGCT CCATCTG CTTC CAGAAGG TTTCTTTCTCCTATC Cphamn1_1787 1932614 - 1934362 + | ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC Cphamn1_1788 1934911 - 1934381 - | Lipocalin family protein Cphamn1_1789 1935908 - 1934979 - | formyltetrahydrofolate deformylase Cphamn1_1790 1935923 - 1937620 + | glycosyl transferase family 39 TERM 1885 1937799 - 1937815 + G 71 -7.9 -4.00042 | GTGACAGAGTACTTC CACTCCC TCA GGGAGCG TTCTTTCATCGACGC Cphamn1_1791 1937628 - 1938305 + | phosphoesterase PA-phosphatase related TERM 1886 1938358 - 1938371 + G 91 -5.3 -5.40474 | CTTCTGCTCGCCTTG CTGAT CTTC ATCAG TTTTTTTGCCGGACT TERM 1887 1939751 - 1939741 - g 82 -8.2 -4.50358 | ACGGAAAGACGAAAA CCGG AGC CCGG AGAGATTGTCCTGAC Cphamn1_1792 1938298 - 1939884 + | glycosyl transferase family 39 TERM 1888 1940117 - 1940089 - g 78 -3.7 -5.06414 | GGTCTTCAACAAAAA CTACGGCCAGACC ACA GCTCTTGCGGCAG GGATAGACCATGCCC Cphamn1_1793 1939895 - 1940836 + | glycosyl transferase family 2 Cphamn1_1794 1940814 - 1941773 + | hypothetical protein Cphamn1_1795 1943485 - 1941779 - | single-stranded-DNA-specific exonuclease RecJ TERM 1889 1942040 - 1942030 - G 80 -2.4 -5.41143 | TAGCGCTGAAAAAAA GCGG TTC CCGA TTGCCCTGTCCGAAT TERM 1890 1944390 - 1944423 + G 72 -9.5 -3.41745 | opp_overlap 1944390, overlap 1944393 GCATTCGCCGCGAAA CTCGTCCGGCGTGAA GTGG TTCGGGCCGGACTGG TTGATATTCTCGGCA TERM 1891 1944393 - 1944420 + G 74 -12 -2.86181 | opp_overlap 1944390, overlap 1944390 TTCGCCGCGAAACTC GTCCGGCGTGAA GTGG TTCGGGCCGGAC TGGTTGATATTCTCG Cphamn1_1796 1944279 - 1945280 + | Inositol phosphatase/fructose-16-bisphosphatase Cphamn1_1797 1946360 - 1945527 - | metallophosphoesterase TERM 1892 1946186 - 1946159 - G 73 -6.2 -4.56597 | opp_overlap 1946177 1946183 TCCCGCCGGTAAAAA CATCCACTCCCG CTTC CCGGAGCTGATG CAGGGCCTCCTTGTT Cphamn1_1798 1946570 - 1947475 + | Pirin domain protein TERM 1893 1947550 - 1947560 + G 87 -4.6 -5.40072 | overlap 1947558 GTATGATCGCCTTCT CGGC TTG GCTG TTTTTTTCAGAACGG TERM 1894 1947784 - 1947766 - g 91 -3 -5.81412 | overlap 1947775 CTCACGCAAAAAAAA CAGGAACG ATC CATGCCCG GATTTTTTCAAACAT TERM 1895 1948069 - 1948079 + G 76 -8.2 -4.14392 | opp_overlap 1948066 1948069 TTGTAGAAAAACTGA GCCG GGG CGGC TTTATCTATGCGTAT Cphamn1_1799 1947477 - 1948196 + | hypothetical protein Cphamn1_1800 1949631 - 1948696 - | quinolinate synthetase complex, A subunit Cphamn1_1801 1950104 - 1949721 - | chaperonin Cpn10 Cphamn1_1802 1950242 - 1951138 + | cation diffusion facilitator family transporter Cphamn1_1803 1951164 - 1952021 + | Rod shape-determining protein MreC TERM 1896 1952446 - 1952434 - g 72 -4.1 -4.82901 | opp_overlap 1952417 1952415 TGCTTTGCAGAAAAA GCAGA TGT TCTAC AAGGGAGTCTTTCTT Cphamn1_1804 1952132 - 1952623 + | signal transduction histidine kinase, LytS TERM 1897 1953404 - 1953393 - g 95 -5.8 -5.40474 | AGCTGTTGAAAAAAA CGGA AAAA TCCG GGGCCGTAGTGGCAA Cphamn1_1805 1952630 - 1954462 + | penicillin-binding protein 2 Cphamn1_1806 1954459 - 1955949 + | D-lactate dehydrogenase (cytochrome) Cphamn1_1807 1955960 - 1956433 + | SsrA-binding protein TERM 1898 1956886 - 1956865 - g 90 -8 -4.97383 | ATCGAAAAAAAACAA CAATCCGC TACAAC GCGGACTG GCTCGGGCAGATGAC Cphamn1_1808 1956495 - 1957712 + | tyrosyl-tRNA synthetase TERM 1899 1957714 - 1957704 - f 83 -4 -5.40072 | GTTGTCTTAAAAAAA GATT TAT AATC ACGTTGCTTTTTCCT Cphamn1_1809 1957794 - 1958339 + | arginine decarboxylase, pyruvoyl-dependent Cphamn1_1810 1958398 - 1959018 + | SNARE associated Golgi protein Cphamn1_1811 1959041 - 1959994 + | protein of unknown function DUF368 TERM 1900 1961589 - 1961566 - g 70 -4.5 -4.60487 | overlap 1961568 GACTATCCGCAAAAA GACGACAAG CATTTC CTCGTCGAC ACGGAACAGCGATCG Cphamn1_1812 1960015 - 1961610 + | L-aspartate oxidase Cphamn1_1813 1962518 - 1961685 - | NAD+ synthetase TERM 1901 1961722 - 1961746 + g 77 -12.1 -3.04144 | opp_overlap 1961722 CGGGCGTAGCGGAAA TCTATGCCCGG TGT CCGGGCGGAGA TCTTGGCGATAACCG TERM 1902 1961746 - 1961722 - G 74 -9.9 -3.59979 | opp_overlap 1961722 CGGGCGTAGCGGAAA TCTATGCCCGG TGT CCGGGCGGAGA TCTTGGCGATAACCG Cphamn1_1814 1963865 - 1962555 - | Peptidase M23 TERM 1903 1962925 - 1962947 + g 75 -9 -3.89501 | opp_overlap 1962938 ACCCCGTTTTCGACC GGCCAGGGCA AAA TGCCCAGGGC TTTGTCAAAATCTTC TERM 1904 1963131 - 1963155 + g 100 -2.8 -6.18768 | overlap 1963124 CAGTAACTTTTTCCG GTTTGCCTGT ATCTC ACCGGAAAAC TTTTTTTTATCTTTT TERM 1905 1963182 - 1963193 + g 76 -4.4 -4.97461 | TTTTTTCAGGGCTAT CAGA ACGC TCTG TTTTTCATCTTTCTT TERM 1906 1963526 - 1963512 - G 78 -10 -3.91897 | opp_overlap 1963508 1963507 CTGGTTATCGACAAA CTGCTC CTT GAGCAG CTTGATTTCACTATC TERM 1907 1963616 - 1963634 + g 70 -8.8 -3.6201 | TGTTATAGTTTTTCA GCGCCTTC ATC GAACGCGC TTCCTCTTTTGTTGT TERM 1908 1964383 - 1964369 - g 70 -10 -3.26031 | opp_overlap 1964366, overlap 1964367 1964365 CCGATCTGAAAGATA TCCGGA CAT TCCGGA AACTGCTTGAATATC Cphamn1_1815 1964218 - 1965492 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1909 1965789 - 1965773 - T 71 -10.1 -2.78596 | TAGTGGCCCAGGACA CCGCCCT CTC AAGGCGG AGATCACGGGTTCGA TERM 1910 1965920 - 1965940 + T 100 -4.7 -5.95539 | opp_overlap 1965920 TCTCGGGTGTACGAA GTCGTTC CCTGACA GAGCGAC TTTTTTTCTTTAGAC TERM 1911 1966693 - 1966719 + T 91 -9.5 -4.81249 | opp_overlap 1966693 CTCAGCACTCTCAAA GCCTTGTAGCA GGATA TGTTACGAGGC TTTTTGCATTTCACC TERM 1912 1966939 - 1966961 + T 87 -6.3 -5.21709 | opp_overlap 1966939 GAGGATATAAAAAAA GGAGACAAG CATAA CTTATCTCC TTTTTTCGTGTAACG TERM 1913 1966961 - 1966939 - T 100 -9.2 -5.74122 | opp_overlap 1966939 GAGGATATAAAAAAA GGAGACAAGC ATA ACTTATCTCC TTTTTTCGTGTAACG Cphamn1_1816 1967337 - 1966993 - | Ag473 TERM 1914 1967183 - 1967193 + g 72 -8.2 -3.86935 | ACAGCCTCTTCAGTA GCCG CAC CGGC TTCTTCTGCTGCTTC TERM 1915 1967336 - 1967322 - G 95 -5.8 -5.50723 | CGAGGAAAAGAAAAA TGAAAA GTT TTTTCA TAATGACGTTCTGGT Cphamn1_1817 1970056 - 1967489 - | aconitate hydratase 2 TERM 1916 1969873 - 1969854 - G 82 -7.8 -4.65078 | ATACTGTCAAGAAAA GCGGCTTT TTCA AATGCCGC ATCATCCACGCCCGG Cphamn1_1818 1971567 - 1970542 - | S-adenosylmethionine/tRNA-ribosyltransferase-isomerase TERM 1917 1970849 - 1970861 + g 70 -2 -4.92363 | overlap 1970856 CTGCCGCCCTCTTTT TTCA CGTTC TGAA TTTTTCTGACTGTTT TERM 1918 1971333 - 1971350 + g 79 -5.5 -5.00616 | opp_overlap 1971330 CCAGCAAAACAAGCT CAACCCG AGCG CCGGTTG TTTTTTGCGCAAAGA TERM 1919 1971659 - 1971635 - R 82 -10 -4.07568 | overlap 1971637 GCTCCTGCCGGAAAA CAGGGCTCCG TTCAC CGGAACCCTA CACCTGCAGAGGAGG TERM 1920 1971657 - 1971637 - R 78 -10.4 -3.63744 | overlap 1971635 TCCTGCCGGAAAACA GGGCTCCG TTCAC CGGAACCC TACACCTGCAGAGGA Cphamn1_1819 1972981 - 1971689 - | Histidinol dehydrogenase TERM 1921 1972307 - 1972324 + g 85 -4.1 -5.47218 | overlap 1972310 AACGCTGTCGATGGA GACGTGT CCGA ACACCTC TTTTTTTGCCTGGGC TERM 1922 1972643 - 1972660 + g 70 -4.2 -4.72272 | opp_overlap 1972654, overlap 1972657 TGTTACCCGCTGGCC GAGAAT AACACG ATTCTC TTTTTCGTAAAAGAA Cphamn1_1820 1973251 - 1974279 + | cell shape determining protein, MreB/Mrl family TERM 1923 1974296 - 1974274 - T 72 -7.1 -4.03995 | overlap 1974276 1974288 CTCCCCACAAAAAGA TACTGAAGA AACAG TCTTCAGCA GGCAGTGTGCTGTCT Cphamn1_1821 1975830 - 1974688 - | glycosyl transferase group 1 TERM 1924 1975590 - 1975604 + g 72 -3.5 -4.82901 | CCAGCTTTTCGTAGG TTGCC ACCTC GGCGA TTTTTGTCGCGAGGG TERM 1925 1976148 - 1976134 - g 70 -2.1 -4.99043 | CTTGTAGAAAGAAAA GGAAT TGCCC ATCCC GACACCATGTGTGAT TERM 1926 1976289 - 1976270 - g 71 -5.6 -4.56597 | TGGTTGCCGGAAAAA CCCTGCCG AAAC CAGGAGGG GGTACAGTAATCGAA TERM 1927 1976763 - 1976743 - g 89 -2.6 -5.76949 | overlap 1976752 TATTTTGAAAAAAAA CAGATCAT ACAGG ATAACCTG ACAGAGTTCATCAAG Cphamn1_1822 1976050 - 1977264 + | Methionine adenosyltransferase Cphamn1_1823 1977420 - 1978613 + | major facilitator superfamily MFS_1 Cphamn1_1824 1979345 - 1978728 - | hypothetical protein TERM 1928 1979878 - 1979894 + G 71 -7.3 -4.00756 | opp_overlap 1979874 1979878 TATTGACATAACTGA CGAAGTC CGG GATTTCG TTGTTTCCTGCGGTC Cphamn1_1825 1979810 - 1980235 + | protein of unknown function UPF0047 Cphamn1_1827 1982848 - 1982372 - | phosphatidylglycerophosphatase A Cphamn1_1826 1980462 - 1982441 + | deoxyxylulose-5-phosphate synthase TERM 1929 1982707 - 1982692 - GT 74 -4 -4.9218 | gap 1 GACCCAGCACAAAAA CCA-CAG CAA CTGATGG AAAAGCGATCGATGG Cphamn1_1828 1983461 - 1982865 - | CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase TERM 1930 1983524 - 1983503 - R 72 -3.1 -4.92812 | gap 1 GTACAACAAAATAAA TATCTC-AGC TGC GCTCAAGATA CGCTATCCGTGACTA Cphamn1_1829 1986066 - 1983652 - | Smr protein/MutS2 TERM 1931 1983759 - 1983739 - G 78 -12.6 -2.87132 | opp_overlap 1983751 GTGCTTTTGTAGACA CTGCGCCA CTTTC TGGCGCAG TGCCCCGGTACCTTT TERM 1932 1984972 - 1984948 - G 73 -10.7 -3.27902 | overlap 1984946 1984944 1984969 GCAGGGAACAAGATA CCCGTGCCGCA GCA TACAGCACAGG AGACCGACCGTTTTC TERM 1933 1985501 - 1985525 + g 82 -6.6 -4.84017 | gap 1, overlap 1985506 AGCCAACCTCCGGCC TGACACCGTTT CAGC AAACGGT-TCA TTTTTCTGCGCAGTT TERM 1934 1985856 - 1985843 - G 79 -6.7 -4.64766 | GGGAGATGCGAAAAA GGCAA AGGA TTGCC CTCCTCAAGAAAACC Cphamn1_1830 1986332 - 1986697 + | DsrE family protein TERM 1935 1986772 - 1986730 - T 72 -5.7 -4.45577 | gap 1, opp_overlap 1986731 1986737, overlap 1986731 1986732 ACAAACGCTATAAAA CTGGTAACGCATGACTGCAT CCAT ATGAAGTCATGCGTT-CTAC CGTTCATATCTTTCT TERM 1936 1986771 - 1986731 - T 70 -9.2 -3.26262 | gap 1, opp_overlap 1986731 1986737, overlap 1986730 1986732 CAAACGCTATAAAAC TGGTAACGCATGACTGCAT CCAT ATGAAGTCATGCGTT-CTA CCGTTCATATCTTTC TERM 1937 1986737 - 1986766 + T 100 -13.7 -3.37732 | opp_overlap 1986731 1986730 1986732, overlap 1986731 CTATAAAACTGGTAA CGCATGACTGCAT CCAT ATGAAGTCATGCG TTCTACCGTTCATAT Cphamn1_1831 1987583 - 1986810 - | protein of unknown function UPF0153 TERM 1938 1987404 - 1987416 + g 70 -3.3 -4.77036 | opp_overlap 1987401 AAATTCAGCAGACGA CAGGC CAA GGCTG TTTTTCATCCTCAGC TERM 1939 1987862 - 1987880 + G 74 -2.3 -5.06505 | overlap 1987863 1987864 ATTACGGAGACGGGC TGGGGTG GTGTA CTCCCTA TTTTTATGTCTGCTT Cphamn1_1832 1987774 - 1988070 + | hypothetical protein TERM 1940 1988314 - 1988338 + T 86 -13.7 -2.63715 | opp_overlap 1988305 AGAGGAGTCATGCCG CCCTGTGTAAT ACT ATTACACGGGG TGATCTGACATCCAT TERM 1941 1988472 - 1988443 - T 76 -5.8 -4.87626 | gap 1, overlap 1988447 TTCCAATATCAAAAA TG-GATTCCCGTG TCAAG CACGGGAATGACA GGAGAGGGGACGTAT TERM 1942 1988467 - 1988447 - T 78 -11.2 -2.88275 | overlap 1988443 AATATCAAAAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGAGGGGA Cphamn1_1833 1988658 - 1988527 - | hypothetical protein TERM 1943 1988569 - 1988557 - G 82 -7.7 -4.614 | opp_overlap 1988556 GGGAATGACAGAAAA GGGAA TGT TTCCC GTCCTTGTACGCCCT TERM 1944 1988639 - 1988679 + g 100 -12.7 -5.24129 | opp_overlap 1988645, overlap 1988640 1988645 ACATCGCGTTTACAA AAAAAAGCAGGGAGCGT CATACGA ACGCTCCCTGCTTTTAA TTTTTTGTCCGGGGC TERM 1945 1988640 - 1988678 + g 100 -16.2 -3.73995 | opp_overlap 1988645, overlap 1988639 1988645 CATCGCGTTTACAAA AAAAAGCAGGGAGCGT CATACGA ACGCTCCCTGCTTTTA ATTTTTTGTCCGGGG TERM 1946 1988645 - 1988673 + g 100 -16.1 -4.90477 | opp_overlap 1988645, overlap 1988640 1988639 CGTTTACAAAAAAAA GCAGGGAGCGT CATACGA ACGCTCCCTGC TTTTAATTTTTTGTC TERM 1947 1988673 - 1988645 - G 100 -16.8 -5.93809 | opp_overlap 1988645 1988640 1988639 CGTTTACAAAAAAAA GCAGGGAGCGTC ATACG AACGCTCCCTGC TTTTAATTTTTTGTC Cphamn1_1834 1989882 - 1988707 - | heterodisulfide reductase, putative Cphamn1_1835 1992242 - 1989990 - | methyl-viologen-reducing hydrogenase delta subunit TERM 1948 1993599 - 1993572 - R 100 -13.6 -4.71186 | gap 1, opp_overlap 1993572 1993575, overlap 1993575 ATCACGAATATAAAA TAATCCCCGAGGT TAC ACCTCGGGGAT-A GTCTGTACAGAAACT TERM 1949 1993572 - 1993600 + r 87 -13.9 -2.87344 | opp_overlap 1993572 1993575, overlap 1993575 ATCACGAATATAAAA TAATCCCCGAGGT TAC ACCTCGGGGATAG TCTGTACAGAAACTA TERM 1950 1993597 - 1993575 - R 100 -17.8 -4.45115 | opp_overlap 1993572 1993575, overlap 1993572 ACGAATATAAAATAA TCCCCGAGGT TAC ACCTCGGGGA TAGTCTGTACAGAAA TERM 1951 1993575 - 1993597 + r 100 -17.8 -2.69151 | opp_overlap 1993575 1993572, overlap 1993572 ACGAATATAAAATAA TCCCCGAGGT TAC ACCTCGGGGA TAGTCTGTACAGAAA Cphamn1_1837 1995609 - 1993633 - | adenylylsulfate reductase, alpha subunit TERM 1952 1994045 - 1994032 - G 71 -6.7 -4.18018 | GGGTCTGATGTAAAA CGGAT TGAC ATCCG GATCGGTGCTGTAAT Cphamn1_1838 1996061 - 1995639 - | adenylylsulfate reductase, beta subunit Cphamn1_1839 1997409 - 1996195 - | sulfate adenylyltransferase TERM 1953 1997745 - 1997733 - R 77 -4.8 -4.99035 | GTACTCACATAAAAA GCTG TATAT CAGC ATCGGCAGCATACTC Cphamn1_1840 1998234 - 1997722 - | hypothetical protein Cphamn1_1841 1998725 - 1998309 - | hypothetical protein TERM 1954 1998375 - 1998390 + g 76 -5.4 -4.87665 | opp_overlap 1998386 1998389 CTGAAGAAAGGCAAT CGTGGT ATAG ATCACG TTTTTCTCCCTGAAA Cphamn1_1842 1999696 - 1998722 - | protein of unknown function DUF81 TERM 1955 1999578 - 1999562 - G 70 -8 -3.68827 | opp_overlap 1999562 1999561 TACCCACCAGGCAAA CCCTTC TGATG GAAGGG ATTCTGCCGCAATAC TERM 1956 1999666 - 1999648 - G 84 -2.3 -5.55001 | overlap 1999650 GAAGAAAAAACAAAA CAGCTGG AACTA CCAACAG AAAAAGCCAGTTACA Cphamn1_1843 2001227 - 1999872 - | uroporphyrin-III C-methyltransferase TERM 1957 2000967 - 2000980 + g 71 -6.7 -4.13767 | opp_overlap 2000956, overlap 2000956 TGGATCGCCGCCTTT CAGTC TGGC GACTG TTTTCCCCTGCCGGG TERM 1958 2001501 - 2001486 - R 70 -6.8 -4.13591 | CGAAGATGACAGAAA GGGGAA AGCA CTCCCC TCATCACTCATAGCT Cphamn1_1844 2002188 - 2001739 - | siroheme synthase TERM 1959 2002317 - 2002288 - R 89 -8.6 -4.62471 | opp_overlap 2002294 2002307, overlap 2002294 GCCAATGGGCAAAAA GTAAAAGCCCAC CATTTC GCGGGCTTTTTC AGCTGAAGAATCCTG TERM 1960 2002311 - 2002294 - R 80 -6.2 -4.77757 | opp_overlap 2002294 2002307, overlap 2002288 GGGCAAAAAGTAAAA GCCCAC CATTTC GCGGGC TTTTTCAGCTGAAGA Cphamn1_1845 2003589 - 2002435 - | Polysulphide reductase NrfD TERM 1961 2002904 - 2002919 + g 70 -3.2 -4.79949 | TTTATCGCCTGCTTT CCGG CGTCGAAT CCGG TTGTTTTTTTGAGGA Cphamn1_1846 2004375 - 2003599 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_1847 2004747 - 2004385 - | cytochrome c family protein Cphamn1_1848 2006386 - 2004737 - | DsrK protein TERM 1962 2004788 - 2004798 + g 70 -3.2 -4.89054 | overlap 2004778 CATCGGGTCCTCCCT CAGG TCC TCTG TTCTTTTTTTCTCCC TERM 1963 2005498 - 2005478 - G 70 -4.7 -4.62069 | overlap 2005479 2005488 GTTGGAGGTGAAAAA CCCGAAG TTACCCC CTTCGGA AGCGTATGTGCTGAT TERM 1964 2006139 - 2006151 + g 73 -3.3 -5.00884 | ACACGATCCTTCATA CCCTC CTT GATGG TTTTTTCCCAACCAT Cphamn1_1849 2007385 - 2006390 - | Nitrate reductase gamma subunit Cphamn1_1850 2007888 - 2007382 - | hypothetical protein Cphamn1_1851 2008261 - 2007968 - | sulfur relay protein TusB/DsrH Cphamn1_1852 2008696 - 2008331 - | sulfur relay protein TusC/DsrF Cphamn1_1853 2009073 - 2008714 - | sulfur relay protein TusD/DsrE TERM 1965 2009107 - 2009136 + r 100 -15.7 -5.63517 | opp_overlap 2009103 2009101 2009104 GATCGAAAAGACTCC CGGTGGAGTACGC TTAC GCGCACTCCGCCG TTTTTTCTTTAAGCG Cphamn1_1854 2009521 - 2009120 - | hypothetical protein Cphamn1_1855 2011260 - 2009521 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Cphamn1_1856 2012360 - 2011281 - | sulfite reductase, dissimilatory-type beta subunit Cphamn1_1857 2013660 - 2012434 - | sulfite reductase, dissimilatory-type alpha subunit Cphamn1_1858 2014051 - 2013716 - | sulfur relay protein, TusE/DsrC/DsvC family Cphamn1_1859 2015914 - 2014499 - | cobyrinic acid a,c-diamide synthase TERM 1966 2015694 - 2015669 - G 71 -6.9 -4.15044 | overlap 2015677 GCTGTTTCGAAGAAA TGAATCCAGAC ACCC GTCTGAACCCA TCAGAAAAGGGTCAA TERM 1967 2016037 - 2016001 - R 100 -10.4 -5.65177 | gap 2, opp_overlap 2016000 ACATGCACAAAAAAA GGGACATA-TC-GCATGA TGA TCATGCCGACTATGCCCC GGTTTTCCCATTCTT Cphamn1_1860 2016298 - 2016062 - | SirA family protein Cphamn1_1861 2017575 - 2016457 - | hypothetical protein Cphamn1_1862 2018479 - 2017994 - | Rhodanese domain protein TERM 1968 2018574 - 2018559 - H 79 -2.5 -5.42458 | opp_overlap 2018569, overlap 2018560 AAGAAAAAAAACAAA CTGGC TGGATG GCCAA AGGGCTGGTTGGCTA TERM 1969 2019706 - 2019659 - g 100 -9.2 -5.66684 | gap 1, opp_overlap 2019668, overlap 2019669 GAAGCGAGAAAAAAA GGAGCAAAAGTCG-TCTGCCTCG ATC CGAGACAGAGCGAGCTTGCCTCC AAAGCCGACGAGTGG TERM 1970 2019696 - 2019669 - g 76 -11.4 -3.25419 | gap 1, opp_overlap 2019668, overlap 2019659 AAAAAGGAGCAAAAG TCG-TCTGCCTCG ATC CGAGACAGAGCGA GCTTGCCTCCAAAGC TERM 1971 2020621 - 2020603 - g 75 -10.3 -3.41745 | opp_overlap 2020588 GCCTTACAACATCAA GGCGTTC TTCAT GAACGCC GCCAATCCGATCAGA Cphamn1_1863 2018936 - 2021734 + | molybdopterin oxidoreductase TERM 1972 2022459 - 2022437 - g 82 -7.6 -4.6526 | overlap 2022444 ATAAACTGTCAAAAA CCGGAAAGGC CAA ACCGCTCCGG CCTGAACTCGGAACC Cphamn1_1864 2021905 - 2022504 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_1865 2022642 - 2023556 + | Polysulphide reductase NrfD Cphamn1_1866 2023828 - 2024439 + | cytoplasmic chaperone TorD family protein Cphamn1_1867 2024564 - 2025280 + | pyridoxal phosphate biosynthetic protein PdxJ Cphamn1_1868 2025618 - 2026301 + | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family Cphamn1_1869 2026298 - 2027146 + | undecaprenol kinase TERM 1973 2027214 - 2027195 - f 79 -12.2 -2.59668 | overlap 2027194 GAAGATGGCCAGAAC GGGCGAAA GATT TTTCGCCC CTACGAATTACCAGT TERM 1974 2027626 - 2027657 + G 84 -2.4 -5.55664 | gap 1, overlap 2027628 2027629 GAAATGAGCTCTACC T-ATCAGGGACATGA TAT TCATATCCTTGGTTA TTTTTTTGATCATAA TERM 1975 2027628 - 2027654 + G 82 -6.6 -4.8487 | overlap 2027626 2027629 AATGAGCTCTACCTA TCAGGGACATGA TAT TCATATCCTTGG TTATTTTTTTGATCA Cphamn1_1870 2027386 - 2028246 + | PHP domain protein TERM 1976 2028315 - 2028330 + G 100 -4.7 -6.14618 | CGATGAAAGAGTTTT TCCTG ACTATG CAGGA TTTTTTTCTTTTCTC Cphamn1_1871 2028254 - 2029048 + | protein of unknown function DUF140 TERM 1977 2029658 - 2029634 - g 73 -2.7 -4.99043 | CCCTGAGAAATAAAA GTGATCTCGGC GCA GCCATAGTCAC CCATATTATTGACGA Cphamn1_1872 2029075 - 2029809 + | ABC transporter-related protein Cphamn1_1873 2029836 - 2030717 + | Mammalian cell entry related domain protein TERM 1978 2031346 - 2031327 - g 70 -2.1 -5.0538 | overlap 2031329 GGTGACGGGAAAAAA CCTGGAA GACAAT TTCCACG CACGTTTCTCTCAGC Cphamn1_1874 2030749 - 2031888 + | beta-lactamase TERM 1979 2032712 - 2032692 - T 77 -11.2 -2.68806 | overlap 2032688 CCGGAGAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGAGGGGG TERM 1980 2032894 - 2032877 - T 91 -9.9 -4.59511 | AATATGTCCGAAAAA GGCGAAA GATT TTTCGCC CCTACCAGTTACCTG Cphamn1_1875 2034973 - 2033054 - | Rieske (2Fe-2S) domain protein Cphamn1_1876 2035452 - 2036396 + | domain of unknown function DUF1730 TERM 1981 2036790 - 2036810 + T 77 -11.2 -2.68544 | overlap 2036785 TCCCCTCTCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGATATT TERM 1982 2036841 - 2036859 + T 74 -11 -2.64155 | overlap 2036838 2036838 GGAAGTCTTCATGGA TGCCGGAT CAA GTCCGGCA TGACTTTCCGGAGGG TERM 1983 2037082 - 2037126 + T 100 -17.4 -4.62392 | gap 1, overlap 2037083 TCGCCGGTGACAGGC CCAGGGGTTTATTGCTTCGGC ATTT GCCGGA-CAATAAACCCCTGA TTTCTTTCCTTCTTG TERM 1984 2037083 - 2037125 + T 100 -20.9 -3.35809 | gap 1, overlap 2037082 CGCCGGTGACAGGCC CAGGGGTTTATTGCTTCGGC ATTT GCCGGA-CAATAAACCCCTG ATTTCTTTCCTTCTT Cphamn1_1877 2038757 - 2037180 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1985 2037351 - 2037339 - G 90 -9.1 -4.70879 | GGCAAACGGGAAAAA CGCGT CTG ACGCG ACCGCGGATCCGTTC Cphamn1_1878 2038822 - 2039424 + | phosphoribosylglycinamide formyltransferase Cphamn1_1879 2039421 - 2040092 + | Radical SAM domain protein TERM 1986 2040637 - 2040598 - g 79 -7 -4.60255 | gap 1, opp_overlap 2040598 2040598, overlap 2040599 AGAATTTCGGAAAAA CCGCCGCACTCGCAGCCGG TTT CCG-CTATGCGTCCGGCGA GGTAGTCGTCACTCT Cphamn1_1880 2040345 - 2041322 + | glycosyl transferase family 2 Cphamn1_1881 2041796 - 2041365 - | hypothetical protein TERM 1987 2041766 - 2041786 + g 71 -11.2 -2.76087 | overlap 2041765 CCCCCTCTCCTGTCA TTCCCGTG CTTGA CACGGGAA ATTTGAGCATCTATT TERM 1988 2042322 - 2042292 - g 71 -6.8 -4.18018 | opp_overlap 2042301 2042303 2042317, overlap 2042311 2042313 CGGCGGCATTGAAAA CGCCCCGCTC AGGGCACAAGA GATCGGGGCG ACCGCTTTTGCCCTG TERM 1989 2042301 - 2042337 + G 81 -13.7 -3.05384 | opp_overlap 2042292 2042311 2042313, overlap 2042303 2042317 TGAAAACGCCCCGCT CAGGGCACAAGAGATCG GGG CGACCGCTTTTGCCCTG TTCACTAAGAACCAG TERM 1990 2042303 - 2042335 + G 71 -10.5 -3.08679 | opp_overlap 2042292 2042311 2042313, overlap 2042301 2042317 AAAACGCCCCGCTCA GGGCACAAGAGATCG GGG CGACCGCTTTTGCCC TGTTCACTAAGAACC Cphamn1_1882 2042245 - 2043099 + | apurinic endonuclease Apn1 TERM 1991 2043145 - 2043135 - T 85 -8.2 -4.62772 | overlap 2043137 TTGAAATGAAAGAAA CCGG AGA CCGG AGACCGGAAGCCAGA Cphamn1_1883 2044485 - 2043613 - | protein of unknown function DUF214 TERM 1992 2045060 - 2045040 - R 77 -11.2 -2.71503 | overlap 2045036 2045037 CGTAAGAAGAATGGA TTCCCGTG TCGAG CACGGGAA TGACTGAAAAGGGAG TERM 1993 2045090 - 2045071 - R 70 -6.4 -4.23892 | overlap 2045072 GGGAATGACTGAAAA GGGAGAAA GTCA TCCCTCCC CGTCTCCCCACATCC Cphamn1_1884 2045742 - 2045170 - | hypothetical protein TERM 1994 2045645 - 2045662 + g 78 -4.1 -5.1861 | opp_overlap 2045637 AACCAGATCCATAGT GACGG AGGCGAAG CCGTC TTTTTTGCTGCTAAA TERM 1995 2045948 - 2045938 - g 70 -3.2 -4.78149 | overlap 2045939 TCTATAATTCAAAAA CTCC CGC AGAG GACACATTCTATGGG Cphamn1_1885 2045904 - 2047412 + | amidophosphoribosyltransferase Cphamn1_1886 2047958 - 2047515 - | transcriptional regulator, TraR/DksA family TERM 1996 2047568 - 2047580 + g 73 -3.3 -5.03314 | opp_overlap 2047557 CAGACGTATGGGGTA CGGCT TCA AGGCG TTTTTTCGGAATAGG TERM 1997 2048063 - 2048051 - R 78 -6.3 -4.72846 | TGATATACGTAAAAA CACAT CTG ATGTG AACAAACCCGTTGGG Cphamn1_1887 2051642 - 2048400 - | isoleucyl-tRNA synthetase TERM 1998 2051861 - 2051903 + r 70 -10.1 -2.61264 | gap 1, opp_overlap 2051868, overlap 2051860 TATAGCGCGGGGAAA TGCGAAAGGCAAGCCTTT TACCTGAT AAAGGCTTGCCTCT-GCA ATTATCAATCAAAAA TERM 1999 2051897 - 2051868 - R 100 -12.3 -3.71649 | opp_overlap 2051861 2051860 CGGGGAAATGCGAAA GGCAAGCCTTT TACCTGAT AAAGGCTTGCC TCTGCAATTATCAAT Cphamn1_1888 2052179 - 2051961 - | hypothetical protein Cphamn1_1889 2053924 - 2052887 - | dTDP-glucose 4,6-dehydratase TERM 2000 2053721 - 2053705 - G 73 -5.9 -4.57569 | TCACGCCGTCAAAAA GCTCTTT TTC AAAAAGC TCCAGCATGACTGCG Cphamn1_1890 2054288 - 2054151 - | hypothetical protein TERM 2001 2054399 - 2054381 - R 74 -11 -2.64155 | overlap 2054377 2054378 CCCTCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAATACTCCC TERM 2002 2054450 - 2054430 - R 77 -11.2 -2.75473 | overlap 2054426 AATATAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGAGAGGGGG TERM 2003 2054516 - 2054487 - R 81 -11.7 -3.02043 | gap 1 AATTCCCGTGTAAGA CCTGTGAAATA-GA TGC TCATATTTCACAGG GGTGATCCGGCATCC TERM 2004 2054568 - 2054550 - R 74 -11 -2.64155 | overlap 2054546 2054547 CCCTCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAATACTCCC TERM 2005 2054619 - 2054599 - R 77 -11.2 -2.75473 | overlap 2054595 AATATAAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGAGGGGG TERM 2006 2054685 - 2054656 - R 81 -11.7 -3.02043 | gap 1 AATTCCCGTGTAAGA CCTGTGAAATA-GA TGC TCATATTTCACAGG GGTGATCCGGCATCC TERM 2007 2054737 - 2054719 - R 74 -11 -2.64155 | overlap 2054715 2054716 CCCTCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAATACTCCC TERM 2008 2054788 - 2054768 - R 77 -11.2 -2.75473 | overlap 2054764 2054765 AATATAAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACTGGAGAGGGGG TERM 2009 2054905 - 2054887 - R 74 -11 -2.64155 | overlap 2054883 2054884 CCCCCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATACGGTTTTAC TERM 2010 2055073 - 2055055 - R 74 -11 -2.64155 | overlap 2055051 2055052 CCCTCTGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAATACTCCC TERM 2011 2055124 - 2055104 - R 77 -11.2 -2.75473 | overlap 2055100 AATATAAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGAGGGGG TERM 2012 2055190 - 2055161 - R 81 -11.7 -3.02043 | gap 1 AATTCCCGTGTAAGA CCTGTGAAATA-GA TGC TCATATTTCACAGG GGTGATCCGGCATCC TERM 2013 2055242 - 2055224 - R 74 -11 -2.64155 | overlap 2055220 2055221 CCCTCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAATACTCCC TERM 2014 2055293 - 2055273 - R 77 -11.2 -2.75473 | overlap 2055269 AATATAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGAGAGGGGG TERM 2015 2055372 - 2055317 - R 71 -8.4 -3.44622 | gap 1 GAGGGGGAGAATGAA TTCCCGTGTAAGACCTGTGAAATA-GA TGC TCATATTTCACGGGTCAGGCACGTGAA TGACACAAAGGGGAA Cphamn1_1891 2056335 - 2055475 - | dTDP-4-dehydrorhamnose reductase Cphamn1_1892 2057317 - 2056712 - | dTDP-4-dehydrorhamnose 3,5-epimerase Cphamn1_1893 2057740 - 2057369 - | hypothetical protein Cphamn1_1894 2058860 - 2057982 - | glucose-1-phosphate thymidylyltransferase Cphamn1_1895 2059377 - 2059868 + | hypothetical protein TERM 2016 2059892 - 2059921 + T 80 -10.9 -3.28712 | gap 1, opp_overlap 2059898, overlap 2059898 CGGCCACGTATAACG CAAAAA-CCCCGAG TCA TTCGGGGTTTTTTG TTGTGCGGGGAGCAG TERM 2017 2059898 - 2059914 + T 100 -10.1 -5.55769 | opp_overlap 2059898, overlap 2059892 CGTATAACGCAAAAA CCCCGAG TCA TTCGGGG TTTTTTGTTGTGCGG TERM 2018 2059914 - 2059898 - T 91 -9.4 -4.78149 | opp_overlap 2059892 2059898 CGTATAACGCAAAAA CCCCGA GTCAT TCGGGG TTTTTTGTTGTGCGG Cphamn1_1896 2060635 - 2059946 - | hypothetical protein Cphamn1_1897 2060982 - 2061155 + | hypothetical protein TERM 2019 2061205 - 2061188 - T 100 -9.9 -5.4588 | GAAAATGACAAAAAA GGCGAAA TATT TTTCGCC CCTACCAATCACCGC Cphamn1_1898 2062184 - 2061387 - | 3'(2'),5'-bisphosphate nucleotidase TERM 2020 2062316 - 2062298 - R 74 -11 -2.64155 | overlap 2062294 2062295 CCCCCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATACGGTTTTAC TERM 2021 2062602 - 2062582 - R 77 -11.2 -2.68806 | overlap 2062578 CCGGAGAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGATGGGG TERM 2022 2062719 - 2062701 - R 74 -11 -2.64155 | opp_overlap 2062698, overlap 2062697 2062698 CCCTCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGCGTTTTTAC TERM 2023 2062769 - 2062749 - R 77 -11.2 -2.68806 | overlap 2062745 CCGGAGAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGATGGGG TERM 2024 2063109 - 2063092 - R 100 -9.9 -5.36965 | GAAGATGACAAAAAA GGCGAAA TATT TTTCGCC CCTACCAATCACCGC Cphamn1_1899 2065137 - 2063287 - | glucosamine/fructose-6-phosphate aminotransferase, isomerizing TERM 2025 2064098 - 2064115 + g 77 -9.1 -4.03234 | ACCAGCATCACATCG CCCGGTC CGAT GATCGGG TTTCTGTACCGGAAC TERM 2026 2065397 - 2065380 - R 100 -9.9 -5.36965 | GAAGATGACAAAAAA GGCGAAA TATT TTTCGCC CCTACCAATCACCGC Cphamn1_1900 2067094 - 2065664 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 2027 2065983 - 2065965 - G 71 -5.3 -4.46212 | gap 1, opp_overlap 2065965 CGCTTCACCAGAAAA CGGTC-AC AGCG GTCGACCG TCTCATACGATCCCC TERM 2028 2066594 - 2066607 + g 70 -8.1 -3.80877 | opp_overlap 2066591 2066594, overlap 2066591 CTCCACCGGAAAGAC GCGGT TCTC ACCGC TCTTTTCTACCGTGG TERM 2029 2067255 - 2067220 - H 71 -4.6 -4.64676 | opp_overlap 2067221, overlap 2067229 GTAGCCCGAAGAAAA CCAGGAAAAGGCGAAA GATT TTTCGCCCCTACCAGT TACCTGTCTTGCATT TERM 2030 2067246 - 2067229 - H 86 -9.9 -4.43571 | opp_overlap 2067221, overlap 2067220 AGAAAACCAGGAAAA GGCGAAA GATT TTTCGCC CCTACCAGTTACCTG TERM 2031 2067686 - 2067668 - H 86 -2.4 -5.626 | CATTCCATAAAAAAA CGCTCA TGCTCAT TGAACG CGACCAAAAAGGAGT Cphamn1_1901 2067673 - 2068863 + | AAA ATPase TERM 2032 2068867 - 2068916 + T 81 -9.4 -4.10437 | GAGCTTTTTTAATTG GGTATTGGGCCCCGTGAAAT CAGATAAGAT ATTTCACAGGGCCGATTACC TTGTTTCCTTAATGC Cphamn1_1902 2070413 - 2068992 - | Phosphomannomutase Cphamn1_1903 2070757 - 2070587 - | hypothetical protein TERM 2033 2070756 - 2070738 - G 70 -11 -2.64155 | overlap 2070734 2070735 CCCTCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAAGACTTCC TERM 2034 2070965 - 2070948 - R 100 -9.9 -5.77677 | GAAAATAACAAAAAA GGCGAAA TATT TTTCGCC CCCTACCAATCACCG Cphamn1_1904 2071764 - 2071375 - | PilT protein domain protein TERM 2035 2071692 - 2071671 - G 72 -8.1 -3.91506 | overlap 2071672 TCACCGGTAAAAAGA CTTCTTGAG CTTC CTCAAGAAA AGCTATAACATTCTG Cphamn1_1905 2071981 - 2071754 - | hypothetical protein TERM 2036 2072559 - 2072542 - H 100 -9.9 -5.77677 | GAAAATAACAAAAAA GGCGAAA TATT TTTCGCC CCTACCAATCACCGC Cphamn1_1907 2073193 - 2073465 + | hypothetical protein Cphamn1_1908 2074053 - 2073622 - | S23 ribosomal protein Cphamn1_1909 2074695 - 2074165 - | Adenylyl-sulfate kinase Cphamn1_1910 2075866 - 2075111 - | protein of unknown function DUF218 Cphamn1_1911 2077048 - 2075981 - | dTDP-glucose 4,6-dehydratase Cphamn1_1912 2077412 - 2077275 - | hypothetical protein TERM 2037 2077476 - 2077436 - R 72 -7.8 -3.89524 | overlap 2077437 ATGCTATCTGATAAA CCCCGCCCTGTGAAATA-GA TGT TCATATTTCACAGGG-GTGA TCCGGCATCCATGCC TERM 2038 2077522 - 2077504 - R 74 -11 -2.64155 | overlap 2077500 2077501 GCCCCCGGAAAGTCA TGCCGGAC TTG ATCCGGCA TCCATGAATACTCCC TERM 2039 2077573 - 2077553 - R 77 -11.2 -2.75473 | overlap 2077549 AATATAAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAGAGGGGG TERM 2040 2077687 - 2077704 + r 100 -4.1 -5.75538 | GATGGCCGTTCACCC GTCTCTC CTGT GATAGAC TTTTTCTTTTTTAAA Cphamn1_1913 2078274 - 2077681 - | dTDP-4-dehydrorhamnose 3,5-epimerase Cphamn1_1914 2079225 - 2078329 - | glucose-1-phosphate thymidylyltransferase Cphamn1_1916 2081561 - 2080569 - | NAD-dependent epimerase/dehydratase Cphamn1_1917 2082658 - 2081594 - | dTDP-glucose 4,6-dehydratase Cphamn1_1918 2083245 - 2082658 - | dTDP-4-dehydrorhamnose 3,5-epimerase Cphamn1_1919 2084199 - 2083303 - | glucose-1-phosphate thymidylyltransferase Cphamn1_1921 2086009 - 2084513 - | transposase, IS5 family, putative TERM 2041 2084642 - 2084622 - G 82 -3.9 -5.30686 | AACAGGCACAAAAAA GGAGCGG CGAGCAC CCGGTCC AGATTCATCACGAGG Cphamn1_1922 2087102 - 2086131 - | transposase IS204/IS1001/IS1096/IS1165 family protein Cphamn1_1923 2088016 - 2087195 - | glycosyl transferase family 2 Cphamn1_1924 2089033 - 2088182 - | glycosyl transferase family 11 TERM 2042 2088909 - 2088899 - G 72 -4 -4.80959 | opp_overlap 2088899 CAAGCCACAAGAAAA CTTA TCA TAAG TATCATAAAATGAAG Cphamn1_1925 2089826 - 2089038 - | glycosyl transferase family 2 TERM 2043 2089385 - 2089373 - G 76 -2.7 -5.17786 | CAATAAAATTAAAAA GATAT AAT ACATC AGGAAAATAATTGCA TERM 2044 2090479 - 2090501 + r 86 -9.8 -4.30559 | opp_overlap 2090478, overlap 2090464 2090461 CCGGTGAAAAAATCC CGGTTGTCCT TAT AGGGCTACCG TTTTAACGTTTTGTT Cphamn1_1926 2092058 - 2090661 - | hypothetical protein TERM 2045 2090727 - 2090741 + g 70 -8.6 -3.73072 | opp_overlap 2090727 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_1927 2093035 - 2092169 - | cobalamin B12-binding domain protein Cphamn1_1928 2094521 - 2093274 - | O-antigen polymerase Cphamn1_1929 2095817 - 2094543 - | polysaccharide biosynthesis protein TERM 2046 2095008 - 2094993 - G 77 -9 -4.07885 | TATTGCCCTGTAAAA TGGCGT CATA ACGCCA AGAACAGCCTGTATC Cphamn1_1930 2097017 - 2095848 - | DegT/DnrJ/EryC1/StrS aminotransferase TERM 2047 2096175 - 2096149 - G 75 -8.9 -3.84246 | gap 1 TTTTGAATTATCAAA TCAGGATGGCTA TTCA TAGC-ATCCTGA AACAACAGAGCATTC Cphamn1_1931 2097949 - 2097014 - | NAD-dependent epimerase/dehydratase Cphamn1_1932 2099054 - 2097993 - | GDP-mannose 4,6-dehydratase Cphamn1_1933 2099521 - 2099114 - | polysaccharide biosynthesis protein Cphamn1_1934 2099981 - 2099724 - | S23 ribosomal protein Cphamn1_1936 2100668 - 2100444 - | YcfA family protein Cphamn1_1937 2100892 - 2100668 - | hypothetical protein Cphamn1_1938 2101139 - 2100972 - | hypothetical protein TERM 2048 2101351 - 2101339 - R 85 -7.7 -4.614 | opp_overlap 2101338, overlap 2101341 GGGAATGACAGAAAA GGGAA CGT TTCCC GTCCTTGTGCGCTTT Cphamn1_1939 2101624 - 2101316 - | hypothetical protein Cphamn1_1940 2102453 - 2102085 - | S23 ribosomal protein Cphamn1_1941 2103205 - 2102915 - | hypothetical protein Cphamn1_1942 2103420 - 2103202 - | hypothetical protein TERM 2049 2103423 - 2103433 + r 77 -3.2 -5.2422 | GAATCTGCGTCATCT TTGG CCT CCGA TTTTTTCATCTGCTT Cphamn1_1944 2104125 - 2103871 - | Excinuclease ABC C subunit domain protein Cphamn1_1945 2104741 - 2104529 - | protein of unknown function UPF0150 Cphamn1_1946 2104991 - 2104731 - | hypothetical protein Cphamn1_1947 2105535 - 2105200 - | protein of unknown function DUF86 Cphamn1_1948 2105818 - 2105528 - | DNA polymerase beta domain protein region Cphamn1_1949 2106355 - 2105987 - | S23 ribosomal protein Cphamn1_1950 2107050 - 2106826 - | hypothetical protein Cphamn1_1951 2107477 - 2107253 - | YcfA family protein Cphamn1_1952 2107701 - 2107477 - | hypothetical protein Cphamn1_1953 2107948 - 2107781 - | hypothetical protein TERM 2050 2108160 - 2108148 - R 85 -7.7 -4.614 | opp_overlap 2108147, overlap 2108150 GGGAATGACAGAAAA GGGAA CGT TTCCC GTCCTTGTGCGCTTT Cphamn1_1954 2108433 - 2108125 - | hypothetical protein Cphamn1_1955 2108988 - 2108698 - | hypothetical protein Cphamn1_1956 2109203 - 2108985 - | hypothetical protein TERM 2051 2109206 - 2109216 + r 77 -3.2 -5.2422 | GAATCTGCGTCATCT TTGG CCT CCGA TTTTTTCATCTGCTT Cphamn1_1957 2109716 - 2109504 - | protein of unknown function UPF0150 Cphamn1_1958 2110401 - 2110066 - | protein of unknown function DUF86 Cphamn1_1959 2110684 - 2110394 - | DNA polymerase beta domain protein region Cphamn1_1960 2111221 - 2110853 - | S23 ribosomal protein Cphamn1_1961 2112019 - 2111624 - | PilT protein domain protein Cphamn1_1962 2112282 - 2112016 - | hypothetical protein Cphamn1_1963 2112714 - 2112490 - | hypothetical protein Cphamn1_1964 2113386 - 2112961 - | PilT protein domain protein Cphamn1_1965 2113622 - 2113383 - | hypothetical protein TERM 2052 2113965 - 2113952 - R 74 -8.1 -4.10781 | opp_overlap 2113952 AACAACTTAGAGAAA GGCAG CATG CTGCC TGAATTGCTTCGCAC Cphamn1_1966 2114162 - 2114007 - | hypothetical protein TERM 2053 2114187 - 2114159 - G 72 -3.7 -4.79949 | opp_overlap 2114163 2114183, overlap 2114160 2114163 TGTCCAAAAAAAGAA TCATGCACTCTCC CAG GAAGAGCGCTCGT CTTCGAGTTGCCTGT TERM 2054 2115776 - 2115762 - g 70 -8.6 -3.73072 | opp_overlap 2115762 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG Cphamn1_1968 2114442 - 2115842 + | hypothetical protein TERM 2055 2116023 - 2116001 - T 74 -6.9 -4.30559 | overlap 2116021 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG Cphamn1_1969 2116576 - 2116376 - | hypothetical protein Cphamn1_1970 2116812 - 2116573 - | hypothetical protein TERM 2056 2116618 - 2116606 - G 80 -4.7 -5.14563 | opp_overlap 2116607, overlap 2116607 TCTTCGATCAAAAAA CGCCG TAA CGGCT TTATTCGGGTCCTCT TERM 2057 2116617 - 2116607 - G 70 -8.2 -3.68256 | opp_overlap 2116607, overlap 2116606 CTTCGATCAAAAAAC GCCG TAA CGGC TTTATTCGGGTCCTC TERM 2058 2116607 - 2116617 + g 76 -8.2 -4.18934 | opp_overlap 2116607 2116606 CTTCGATCAAAAAAC GCCG TAA CGGC TTTATTCGGGTCCTC Cphamn1_1971 2117541 - 2117131 - | protein of unknown function DUF86 Cphamn1_1972 2117921 - 2117526 - | DNA polymerase beta domain protein region Cphamn1_1973 2118567 - 2118199 - | S23 ribosomal protein Cphamn1_1974 2120034 - 2118853 - | glycosyl transferase family 4 TERM 2059 2119359 - 2119341 - G 79 -11 -3.53031 | overlap 2119337 GCCAGTTGAAACGAA GGAACGCT GCA AGCGCTCC GACAAAGGCGATGCT TERM 2060 2119555 - 2119513 - G 91 -14.9 -3.45321 | gap 1, overlap 2119499 2119506 ACCGATAACGCAGAA CAGCGTGATCG-GCCAGGCA ATCA TGCCGGTCTCGATCACGCCG AAGCCGAACAGATTA TERM 2061 2120442 - 2120412 - R 71 -9.8 -3.05844 | overlap 2120422 CTTTTCATGGCAACA GGCAATGGAAGG GAGTCCA CCTCCCATTACC CATTACCAACGTCCT Cphamn1_1975 2120975 - 2120445 - | putative glycosyl transferase, family 4 Cphamn1_1976 2122376 - 2121033 - | hypothetical protein TERM 2062 2122343 - 2122296 - G 71 -10.7 -3.16055 | GAAACGGTCGATCAA GTCCTGCTGTTCTGCCGCGC-CC GCAG GGTGCGCCGCA-AACAACAGGAG AAGCAATATAATGCT Cphamn1_1977 2124855 - 2122444 - | capsular exopolysaccharide family TERM 2063 2122517 - 2122534 + g 75 -10.5 -3.38224 | overlap 2122514 CCTTTGTAGCCGTAG CGGCCGT AGTA GCGGCCG TATTTGCCGTACCCT TERM 2064 2123023 - 2123011 - G 73 -9.1 -3.75629 | overlap 2122983 CAGCGCGAAGGCAAA CGCGA GGT TCGCG CAGACAGTTGACTTT TERM 2065 2123841 - 2123869 + g 86 -8.8 -4.57569 | TGGTAAGTTCCTGCA GCCGCTGCTTGA ACATG TCAAGCTGCTGC TTTTTGGCAAGGTAG TERM 2066 2124982 - 2124955 - R 89 -2.6 -5.63645 | gap 1, opp_overlap 2124956 2124956, overlap 2124956 2124959 GGAAAAGATAAAAAA GTCATCCTCGGGC TTG ACCCGGGGATC-C ATCTTTTCTTGACAG TERM 2067 2125117 - 2125089 - R 70 -6 -4.21773 | overlap 2125090 2125093 TTCCAATATAAAGAA TTGATTCCCGTG TCAAG CACGGGAATGAC TGGAGAGGGGGAGTA TERM 2068 2125116 - 2125090 - R 71 -9.5 -3.12341 | overlap 2125089 2125093 TCCAATATAAAGAAT TGATTCCCGTG TCAAG CACGGGAATGA CTGGAGAGGGGGAGT TERM 2069 2125113 - 2125093 - R 77 -11.2 -2.75473 | overlap 2125090 2125089 AATATAAAGAATTGA TTCCCGTG TCAAG CACGGGAA TGACTGGAGAGGGGG TERM 2070 2125511 - 2125479 - R 81 -10.7 -3.50541 | opp_overlap 2125490, overlap 2125472 ACAAAGAACTCAGAA CTAAGCACTCAGTAC TCA GTACTCAGTACTCAG CACTTAAATAGACTC Cphamn1_1978 2126489 - 2125707 - | hypothetical protein TERM 2071 2126614 - 2126604 - g 74 -4 -4.93333 | AATTAAAATACAAAA TTTC ATG GAAA TGCAAACAGAAAAAA Cphamn1_1979 2126548 - 2126709 + | hypothetical protein TERM 2072 2126825 - 2126805 - T 77 -11.2 -2.62024 | overlap 2126801 CAGGAGGAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGAAGGAACG Cphamn1_1980 2127104 - 2126901 - | hypothetical protein TERM 2073 2127007 - 2126987 - G 71 -11.2 -2.76936 | overlap 2126983 CAGGAAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGAAGGAACG TERM 2074 2127188 - 2127168 - g 71 -11.2 -2.76936 | overlap 2127164 CAGGAAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAAGAAGGAACG TERM 2075 2127466 - 2127446 - g 71 -11.2 -2.76936 | overlap 2127442 GAGGAAAAGAATGGA TTCCCGTG TCAGG CACGGGAA TGACAGGAAGGGAGA Cphamn1_1981 2127163 - 2127498 + | alpha-2-HS-glycoprotein TERM 2076 2128193 - 2128179 - g 74 -7 -4.40561 | overlap 2128176 CGTCCTGAAAAACAA CCCCGC TTT GCCGGG AGAGGTTGAAATGGC TERM 2077 2129431 - 2129403 - g 73 -11.8 -2.71144 | opp_overlap 2129389, overlap 2129405 CATGCCCTGGAACGA CACCGCTCAG CTGAACTTT CTGAGCGGTG AAGTTCGCGAGGCGG Cphamn1_1982 2127883 - 2131404 + | alpha amylase catalytic region TERM 2078 2131431 - 2131462 + T 100 -6.5 -5.71983 | overlap 2131432 TGGTGATTAGTGACT TGTAGGGGCAGAC CCCTGT GTCTGCCCGTGCC TTTTTTTATCATTCC TERM 2079 2131432 - 2131461 + T 82 -10 -4.01563 | overlap 2131431 GGTGATTAGTGACTT GTAGGGGCAGAC CCCTGT GTCTGCCCGTGC CTTTTTTTATCATTC Cphamn1_1983 2131776 - 2131507 - | hypothetical protein TERM 2080 2131561 - 2131579 + g 70 -11 -2.53382 | opp_overlap 2131552 GTAAAACCGCATGGA TGCCGGAT CAC GTCCGGCA TGACTTCCCCCTCCT TERM 2081 2131599 - 2131619 + g 70 -11.2 -2.6952 | overlap 2131594 TTCCCCCTCCTGTCA TTCCCGTG CCTGA CACGGGAA TCCATTCTTCTCCTG TERM 2082 2131649 - 2131667 + g 70 -11 -2.52464 | GTAAAACCCCATGGA TGCCGGAT CAC GTCCGGCA TGACTTCCCCCCCCC TERM 2083 2131688 - 2131708 + g 70 -11.2 -2.6952 | overlap 2131683 TCCCCCCCCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGTCCTG TERM 2084 2131980 - 2132000 + r 77 -11.2 -2.6952 | overlap 2131975 TCCCCCCTCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTATCCTG TERM 2085 2132030 - 2132048 + r 74 -11 -2.70354 | opp_overlap 2132021, overlap 2132027 2132027 GTAAAACTGCATGGA TGCCGGAT CGA GTCCGGCA TGACTTTCTGACGGG TERM 2086 2132106 - 2132126 + r 77 -11.2 -2.6952 | overlap 2132101 TCCCCCCTCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGTCCTG TERM 2087 2132332 - 2132350 + r 74 -11 -2.70354 | opp_overlap 2132323, overlap 2132329 2132329 GTAAAACTGCATGGA TGCCGGAT CGA GTCCGGCA TGACTTTCTGACGGG TERM 2088 2132408 - 2132428 + r 77 -11.2 -2.58812 | overlap 2132403 TCCTCCTTCCTGTCA TTCCCGTG CCTGA CACGGGAA TCCATTGCCTTTCAC Cphamn1_1984 2132746 - 2132444 - | Excinuclease ABC C subunit domain protein TERM 2089 2132829 - 2132847 + r 74 -11 -2.74605 | opp_overlap 2132820, overlap 2132826 2132826 AGAAAACCGCATGGA TGCCGGAT CAA GTCCGGCA TGACTTTTCGGGAGG Cphamn1_1985 2133334 - 2133089 - | hypothetical protein TERM 2090 2133129 - 2133149 + g 70 -11.2 -2.6952 | overlap 2133126 2133124 2133140 CGTTCCTTCTTGTCA TTCCCGTG CTTGA CACGGGAA TCCGTTCTTCTCCTG TERM 2091 2133179 - 2133197 + g 70 -11 -2.64155 | opp_overlap 2133170, overlap 2133176 2133176 GTAAAACCGCATGGA TGCCGGAT CAC GTCCGGCA TGACTTTCAGGGAGG TERM 2092 2133218 - 2133236 + g 70 -11 -2.64155 | overlap 2133215 2133215 TTCAGGGAGGATGGA TGCCGGAT CAG GTCCGGCA TGACTTTCAGGGAGG TERM 2093 2133393 - 2133363 - R 100 -14.1 -3.85698 | opp_overlap 2133363 2133369, overlap 2133369 CCCTCTTCCTACAAA TAAAAACGCCCGG GGGTG CCGGGCGTTTTTG TTCTGTCTCTGTCGG TERM 2094 2133363 - 2133393 + r 100 -16.3 -3.66896 | opp_overlap 2133363 2133369, overlap 2133369 CCCTCTTCCTACAAA TAAAAACGCCCGG GGGTG CCGGGCGTTTTTG TTCTGTCTCTGTCGG TERM 2095 2133369 - 2133387 + r 100 -13.1 -5.27206 | opp_overlap 2133363 2133369, overlap 2133363 TCCTACAAATAAAAA CGCCCGG GGGTG CCGGGCG TTTTTGTTCTGTCTC TERM 2096 2133387 - 2133369 - R 100 -13.1 -5.38054 | opp_overlap 2133369 2133363, overlap 2133363 TCCTACAAATAAAAA CGCCCGG GGGTG CCGGGCG TTTTTGTTCTGTCTC Cphamn1_1986 2134713 - 2133418 - | Cytochrome b/b6 domain TERM 2097 2134463 - 2134478 + g 73 -6 -4.46493 | CGTTCTTCCAGCCAT CCGGCG ACAG CTCCGG TTTTAGTGTCTTTGA TERM 2098 2134520 - 2134536 + g 76 -4.3 -5.0133 | overlap 2134531 2134533 TCAGCGCGTTGTACA GGCGGTT TGT AGACGCC TTTTTTCCCGGCGTC Cphamn1_1987 2135296 - 2134748 - | Plastoquinol--plastocyanin reductase Cphamn1_1988 2136611 - 2135481 - | hydroxyneurosporene synthase TERM 2099 2137289 - 2137256 - R 70 -9 -3.22618 | gap 1, overlap 2137254 GTTTTACATAAGATA CTGTGGATTCCCGTG TCAAG CACGGGAATG-ACAG GAGAGGGGGACAAGT TERM 2100 2137418 - 2137375 - R 71 -8.8 -3.47431 | ATAGCTAAACACGAA GTTGACAGGTGAGGGCGAAA GATT TTTCGCCCCTACCAGTTACC CGTCACCCGTCTTCC Cphamn1_1989 2139052 - 2137541 - | glutamyl-tRNA synthetase TERM 2101 2137947 - 2137962 + g 82 -6.8 -4.78326 | opp_overlap 2137947, overlap 2137948 TCACTGACAAGACGA TCGGCA TCCA TGCCGG TTTCTTTCTTTGCAA TERM 2102 2139906 - 2139922 + G 83 -3 -5.4505 | TGTTTCTGGTATTCA TCTTTG TCTTT CAGAGA TTTTTTGTTCAGGAC TERM 2103 2141019 - 2141048 + G 74 -12.1 -2.77132 | opp_overlap 2141016 2141012, overlap 2141018 2141016 2141040 TTATCAATGAAGCGG CCCTGCTGGCTTC CCGT GAGGCTCGCAGGG ATATTTCTGTGAGTA TERM 2104 2141694 - 2141709 + G 70 -10.4 -2.94045 | opp_overlap 2141691 2141690, overlap 2141691 2141698 CCATTGTAGAAGCGG GCGGCA GCGA TGCCGC TGGTTCTTAACCTGA Cphamn1_1990 2139740 - 2141719 + | ATP-dependent metalloprotease FtsH Cphamn1_1991 2141744 - 2142109 + | hypothetical protein TERM 2105 2142341 - 2142327 - g 70 -2.7 -4.83615 | CATCCGTTATAAAAA CGAGC GGCTT GCACG CAATCCAAGAACAGG Cphamn1_1992 2142148 - 2142447 + | histone family protein DNA-binding protein Cphamn1_1993 2143101 - 2142715 - | hypothetical protein Cphamn1_1994 2145327 - 2143840 - | hypothetical protein TERM 2106 2144422 - 2144394 - G 87 -8.2 -4.77775 | ATGCCACAAAACAAA CGGTAAACATGA TGGCC TCACGTATACCG AACGGAACGTGAAAC Cphamn1_1995 2145865 - 2145332 - | adenine phosphoribosyltransferase Cphamn1_1996 2147301 - 2145946 - | MiaB-like tRNA modifying enzyme TERM 2107 2147065 - 2147082 + g 89 -2 -5.77632 | GCAGCCCGTAACCGC TATCCT GCTTAG AGGGTA TTTTTTTATCATTTT Cphamn1_1997 2147447 - 2147911 + | hypothetical protein TERM 2108 2147996 - 2147966 - T 100 -24.2 -3.41602 | opp_overlap 2147966 2147971, overlap 2147971 TCTACCTCAGCACAA CACAAGACGGCCGT TCA ACGGCCGTCTTGTG TTTATAGACGAGTAA TERM 2109 2147966 - 2147996 + T 100 -24.2 -3.86346 | opp_overlap 2147966 2147971, overlap 2147971 TCTACCTCAGCACAA CACAAGACGGCCGT TCA ACGGCCGTCTTGTG TTTATAGACGAGTAA TERM 2110 2147971 - 2147991 + T 100 -16.9 -3.89695 | opp_overlap 2147966 2147971, overlap 2147966 CTCAGCACAACACAA GACGGCCGT TCA ACGGCCGTC TTGTGTTTATAGACG TERM 2111 2147991 - 2147971 - T 100 -16.9 -3.77808 | opp_overlap 2147971 2147966, overlap 2147966 CTCAGCACAACACAA GACGGCCGT TCA ACGGCCGTC TTGTGTTTATAGACG Cphamn1_1998 2149568 - 2148342 - | rod shape-determining protein RodA TERM 2112 2148536 - 2148523 - G 80 -4.5 -5.07523 | overlap 2148527 CAGAGAGAAACAAAA CCGAC AAGC GTCAG CTCGACATACTTGTT TERM 2113 2148703 - 2148688 - G 73 -6.1 -4.43844 | opp_overlap 2148688 TGAGCAGGGATAAAA CGCAG CTGTGT CTGCG TTCCCTCAAGAAACC TERM 2114 2149224 - 2149209 - G 76 -7.6 -4.41616 | opp_overlap 2149209 2149208 2149213 ATCGCTTGAAAGAAA TCTTGC AAGA GCAAGA ATTGTCGTGACTTTT Cphamn1_1999 2150102 - 2151022 + | GTP-binding protein Era TERM 2115 2151098 - 2151131 + T 73 -4.6 -4.84274 | TGAGTGCTGAGTGCT GAGTGCTGAGGTGA AGATAG TCATGTCAGTGCTC TTTTTCCTGTCATTC TERM 2116 2151168 - 2151188 + T 77 -11.2 -2.62024 | overlap 2151163 CGTTCCTTCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTCCTCCTG TERM 2117 2151218 - 2151236 + T 74 -11 -2.74605 | opp_overlap 2151209, overlap 2151215 2151215 GCAAAACCGCATGGA TGCCGGAT CAC GTCCGGCA TGACTTTTCGGGAGG TERM 2118 2151458 - 2151476 + T 74 -11 -2.74605 | opp_overlap 2151449, overlap 2151455 2151455 GCAAAACCGCATGGA TGCCGGAT CAA GTCCGGCA TGACTTTTCGGGAGG TERM 2119 2151497 - 2151515 + T 74 -11 -2.64155 | overlap 2151494 2151494 TTTCGGGAGGATGGA TGCCGGAT CAA GTCCGGCA TGACTTTCAGGGAGC TERM 2120 2151655 - 2151630 - T 100 -19.1 -5.60993 | opp_overlap 2151630 CCTCCTATAAAAAAA GCCTCTTGCGG GTTA CCGCAAGAGGC TTTTTGACTGTCTGC TERM 2121 2151630 - 2151655 + T 100 -19.1 -4.72846 | opp_overlap 2151630 CCTCCTATAAAAAAA GCCTCTTGCGG GTTA CCGCAAGAGGC TTTTTGACTGTCTGC Cphamn1_2000 2153459 - 2151684 - | RNA binding S1 domain protein TERM 2122 2152260 - 2152247 - G 74 -4.5 -4.8543 | CAAGCTCGACAAAAA CACCG AAAT CGGTA ATGTTGCTGACTGTA TERM 2123 2153540 - 2153557 + H 100 -5.5 -5.63103 | opp_overlap 2153539 TGGTTAGTAAATATG CAGCCGT TCAG ACAGCTG TTTTTTTCATTGCAA TERM 2124 2154906 - 2154896 - g 100 -6.8 -5.27476 | overlap 2154891 CGCAAGAAAAGAAAA GGAG CTC CTCC CGGCGGTCGCCCTTG TERM 2125 2155354 - 2155323 - g 74 -7.8 -4.15565 | opp_overlap 2155324 2155325, overlap 2155324 TGGACTATCCGAAAA GGCGCTGCCGCACC TGAA GCCGCGGCAGCGAT TCATACCGATTTTGA TERM 2126 2155353 - 2155324 - g 74 -11.3 -3.09018 | opp_overlap 2155324 2155325, overlap 2155323 GGACTATCCGAAAAG GCGCTGCCGCACC TGAA GCCGCGGCAGCGA TTCATACCGATTTTG TERM 2127 2155325 - 2155352 + G 75 -12.6 -2.50575 | opp_overlap 2155324 2155323, overlap 2155324 GACTATCCGAAAAGG CGCTGCCGCACC TGAA GCCGCGGCAGCG ATTCATACCGATTTT Cphamn1_2002 2154432 - 2155523 + | GTP-binding protein YchF Cphamn1_2003 2156659 - 2155850 - | glutamate racemase Cphamn1_2004 2157682 - 2157173 - | hypothetical protein TERM 2128 2157924 - 2157912 - g 82 -7.7 -4.614 | opp_overlap 2157911 GGGAATGACAGAAAA GGGAA AGT TTCCC GTCCTTGTACTCCCT Cphamn1_2005 2157777 - 2157962 + | hypothetical protein Cphamn1_2006 2158793 - 2157969 - | short-chain dehydrogenase/reductase SDR TERM 2129 2158927 - 2158903 - R 91 -7.9 -5.24531 | gap 1, overlap 2158906 ATTTTCCATAAAAAA CA-AGCCCCG AACTGG CGGGGCTATG AATGACAAATCACTC TERM 2130 2158923 - 2158906 - R 91 -9.8 -4.72201 | overlap 2158903 TTCCATAAAAAACAA GCCCCG AACTGG CGGGGC TATGAATGACAAATC Cphamn1_2007 2160259 - 2158973 - | Ribulose-bisphosphate carboxylase Cphamn1_2008 2161205 - 2160324 - | deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase Cphamn1_2009 2163374 - 2161257 - | short-chain dehydrogenase/reductase SDR TERM 2131 2164067 - 2164085 + H 74 -11 -2.64472 | opp_overlap 2164052, overlap 2164064 2164064 GCGGCTGCAGATGGA TGCCGCAT CAA GTGCGGCA TGACTTTCAGAGATG Cphamn1_2010 2164203 - 2164658 + | regulatory protein RecX Cphamn1_2011 2165546 - 2164827 - | uridylate kinase TERM 2132 2165609 - 2165579 - R 100 -17.1 -3.33162 | opp_overlap 2165579 2165586, overlap 2165586 CAGGTTACGGGACAA CAAAAAAGCCTCG AACAA CGAGGCTTTTTTG TTTACGCTCCTAACT TERM 2133 2165579 - 2165609 + r 100 -17.1 -3.62275 | opp_overlap 2165579 2165586, overlap 2165586 CAGGTTACGGGACAA CAAAAAAGCCTCG AACAA CGAGGCTTTTTTG TTTACGCTCCTAACT TERM 2134 2165602 - 2165586 - R 100 -9.4 -5.55769 | opp_overlap 2165579 2165586, overlap 2165579 CGGGACAACAAAAAA GCCTCG AACAA CGAGGC TTTTTTGTTTACGCT TERM 2135 2165586 - 2165602 + r 100 -9.4 -5.64421 | opp_overlap 2165586 2165579, overlap 2165579 CGGGACAACAAAAAA GCCTCG AACAA CGAGGC TTTTTTGTTTACGCT Cphamn1_2012 2166477 - 2165611 - | translation elongation factor Ts Cphamn1_2013 2167295 - 2166513 - | ribosomal protein S2 Cphamn1_2014 2167828 - 2167433 - | ribosomal protein S9 TERM 2136 2167772 - 2167785 + g 74 -4.5 -4.82901 | opp_overlap 2167772 CGGCACAAGAAAAGC CCTTG CAAC CGAGG TTTTTCTGCGGCCAA Cphamn1_2015 2168289 - 2167837 - | ribosomal protein L13 TERM 2137 2168598 - 2168580 - g 74 -7.4 -4.25104 | TGTCCCGCAGTAAAA GCGCTATC ACG GACAGCAC ACCCGGCGTGACCAG TERM 2138 2169660 - 2169650 - g 76 -3.2 -5.09259 | opp_overlap 2169658 GAGCTCAAAATAAAA TACG TCA CGCA GATCGGGGCGCACTA Cphamn1_2016 2168501 - 2169808 + | small GTP-binding protein TERM 2139 2169966 - 2169943 - g 74 -3.9 -5.0538 | CCGGACCTGAAAAAA GATCTTGTT TCGCTG AACATGATC AAAGACATAAAAGTC Cphamn1_2017 2169874 - 2170980 + | protein of unknown function DUF59 TERM 2140 2171013 - 2171033 + T 86 -9.7 -4.32857 | opp_overlap 2171013 GTACCCGACAAAAAA TCCCGGTTT GTA ACACCGGGA TTTCTGTTTCAAGCC TERM 2141 2171033 - 2171013 - T 100 -9.7 -5.26316 | opp_overlap 2171013 GTACCCGACAAAAAA TCCCGGTTT GTA ACACCGGGA TTTCTGTTTCAAGCC Cphamn1_2018 2171322 - 2171062 - | nitrogen-fixing NifU domain protein Cphamn1_2019 2173715 - 2171421 - | cell divisionFtsK/SpoIIIE TERM 2142 2172497 - 2172519 + g 70 -2.6 -4.92239 | TGGTTTTACCGAGCA CAACCGGAAG CGC CATTCGATTG TTTTTGAATTTTTCA TERM 2143 2172924 - 2172935 + g 76 -5.8 -4.72272 | GAGCTTTCGTTTGTC GAGG TCTG CCTC TTTTTCATGCACGCC Cphamn1_2020 2175368 - 2174157 - | glycine cleavage system T protein TERM 2144 2175224 - 2175250 + g 84 -2.3 -5.60864 | gap 2, overlap 2175226 TAATTTTCGCTCCCG CTGCC-TG-ATGC CAG GCATACAAGGCTG TTTTTTTCATATCTC Cphamn1_2021 2175750 - 2176004 + | hypothetical protein Cphamn1_2022 2176514 - 2176050 - | hypothetical protein Cphamn1_2023 2177260 - 2176697 - | TPR repeat-containing protein TERM 2145 2176776 - 2176801 + g 86 -6.8 -5.0538 | gap 1 TCAAGCCAGTTACGT GCGGTCGGATC ACCCA GAGCCG-CCGC TTTTTTCAGATCGGC Cphamn1_2024 2177682 - 2177491 - | hypothetical protein Cphamn1_2025 2178339 - 2177701 - | protein of unknown function DUF477 TERM 2146 2177963 - 2177979 + g 80 -2.9 -5.26316 | opp_overlap 2177951, overlap 2177950 2177964 ATACCGGTATGTTCC CGGGTGT TCC ATACCCC TTTTTTATAAAATGC Cphamn1_2026 2179148 - 2178366 - | protein of unknown function DUF477 Cphamn1_2027 2179738 - 2179151 - | LemA family protein TERM 2147 2179976 - 2179997 + G 77 -9.4 -4.07568 | TGCCTCTCTTCTTCA CTGCCGGG ACCGTG CTCGGCAG TTTTGAACACAGCGG TERM 2148 2180590 - 2180606 + G 70 -3 -4.84918 | CTCCGTTCCGGCGGT GAAGTA CGTGT TGCTTC TTTTCTCTTTCTGAG Cphamn1_2028 2179933 - 2180760 + | hypothetical protein Cphamn1_2029 2182977 - 2180782 - | (p)ppGpp synthetase I, SpoT/RelA TERM 2149 2181158 - 2181140 - G 74 -6.7 -4.36914 | TCTCTGGTCACAAAA CCGATGA TATCG TCACCGG GTACCGGCTTGCAGC TERM 2150 2182836 - 2182819 - G 74 -4.1 -5.00895 | gap 1, opp_overlap 2182809, overlap 2182813 GGGATGATAGAAAAA CG-GCTCC CCG GAAGCGCG TTTTTCACCTTCGTG TERM 2151 2182901 - 2182940 + g 76 -6.5 -4.49311 | gap 1, opp_overlap 2182901, overlap 2182883 2182882 2182905 AGGGATTCGTCGAAA TCCCTGAGATTCTGGCGG GCAAG CCGC-AGGATCTCATGCA TTTTCTCATACTGCT Cphamn1_2030 2185660 - 2183588 - | excinuclease ABC, B subunit TERM 2152 2184846 - 2184812 - G 71 -7.1 -4.15044 | opp_overlap 2184841 CCGGGCCTCAACAAA CTTTTCTCCTGAACG AAACA CGTTCAGGCGATGAG CAAGCTCGTCTTCTA TERM 2153 2185959 - 2185971 + H 72 -3.3 -4.9792 | opp_overlap 2185959 TCTCTCAAAAGGCAA CAGGT GAA ACCGG TTTTTCTATCACCTG TERM 2154 2187534 - 2187521 - g 74 -8.1 -4.0257 | TTGAAAAAGTAAGAA CGGGA GATT TCCCG GACTGGCTGCTTGAA Cphamn1_2031 2186242 - 2189199 + | peptidase M16 domain protein Cphamn1_2032 2189321 - 2190232 + | band 7 protein TERM 2155 2190362 - 2190306 - f 100 -26.4 -2.94578 | opp_overlap 2190319, overlap 2190319 GAAAAAGAAAAGTCA TTCCCGTGTAAGACCTGTGAAATC CGAGCATAT AATTTCACAGGTCTTACACGGGAA TCCGTAAGAGGTTTG Cphamn1_2033 2190425 - 2191507 + | permease YjgP/YjgQ family protein TERM 2156 2191876 - 2191837 - g 82 -10.8 -3.84985 | opp_overlap 2191843, overlap 2191843 2191864 GATGAAAACAGAGAA CATAAAGGAGTGTTTCGC CATA ACGAATCCCTCCTTCATG CTTGCAGGACAGAGC TERM 2157 2191870 - 2191843 - g 71 -6.2 -4.33674 | opp_overlap 2191843, overlap 2191837 2191864 AACAGAGAACATAAA GGAGTGTTTCGC CATA ACGAATCCCTCC TTCATGCTTGCAGGA TERM 2158 2191896 - 2191913 + G 84 -4.8 -5.252 | opp_overlap 2191888 CAGGACAGAGCGCCA CGTTCC ACGGAA GGGACG TTTTTTCTCCAGCTG Cphamn1_2034 2191511 - 2192317 + | protein of unknown function DUF62 Cphamn1_2035 2193239 - 2192340 - | RNA polymerase, sigma 70 subunit, RpoD family TERM 2159 2192519 - 2192499 - G 77 -9.7 -3.77806 | overlap 2192497 2192502 CCCGATACCAAAATA GGAGCGGAT CAC ATCCGCTTC ACGGGGAGCAAGCAC Cphamn1_2036 2196152 - 2193396 - | valyl-tRNA synthetase TERM 2160 2193815 - 2193829 + g 70 -8.6 -3.65714 | GAACACCGAAAACCG CACGAA GGC TTCGTG TTTCCGATATGATTT TERM 2161 2195545 - 2195525 - G 74 -9.7 -3.59979 | opp_overlap 2195540 CCTCTTCATCGGAAA GCGCTGTCT GCG AGACAGGGC ACCAGTTGATGATCC TERM 2162 2196117 - 2196156 + g 80 -10.8 -3.6914 | opp_overlap 2196122, overlap 2196114 CTTATGATGCCATAC GTAAATGCAGACATCGCC TTCC GACAATGTCTGCATCTAC TTCATTTATTGAACT TERM 2163 2196151 - 2196122 - G 90 -13.7 -3.71378 | opp_overlap 2196117 2196114 GATGCCATACGTAAA TGCAGACATCGCC TTCC GACAATGTCTGCA TCTACTTCATTTATT TERM 2164 2196176 - 2196206 + r 100 -2.4 -5.93252 | opp_overlap 2196176, overlap 2196179 TTTATTGAACTGAAA CACCGGCTTTGGAA GTT TTCCTACTCCGATG TTTTTTCTTTTTCAG Cphamn1_2037 2196882 - 2196196 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 2165 2196356 - 2196380 + g 77 -10.1 -3.65902 | CTCGCCATGATCTCC TCGAGAAGCTT GCG AATCTTCTCGA TTTCCCTGGCCTGGA TERM 2166 2197233 - 2197248 + rH 83 -6.2 -5.15969 | opp_overlap 2197232 CAGAAACGGGAAATC GGAAAA GTGG TTTTCC TTTTTTAACTTGGCA TERM 2167 2197379 - 2197360 - gR 74 -2 -5.10154 | opp_overlap 2197364, overlap 2197361 2197364 ATCCAAAACGAAAAA CTCAGCCC TGAA GGGCTTAT CGCATACTGCGCCAG TERM 2168 2197534 - 2197547 + Gr 86 -8.1 -4.66537 | opp_overlap 2197534 ATTTCCCCGCAGATA CTGCG TCAT CGCAG TTTTGTCTTCCAGGA Cphamn1_2039 2198789 - 2197914 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Cphamn1_2038 2197303 - 2197965 + | thymidylate synthase, flavin-dependent TERM 2169 2199812 - 2199769 - g 90 -13.2 -3.81488 | gap 1, opp_overlap 2199769, overlap 2199764 GCTTGGCAAACAGAA GCTCGCCGACGGCG-GACTTG TAG CAAATCTCGCTGTAGACGAGC TGGAAAACGCTTCAC TERM 2170 2200281 - 2200300 + G 91 -4.2 -5.60993 | gap 1, overlap 2200283 2200284 2200294 ATGCGGAGGTCAATC CTC-GCCTC GGA GAGGCTGTG TTTTTTTGTGAAACC TERM 2171 2200283 - 2200298 + G 71 -5.4 -4.45201 | gap 1, overlap 2200281 2200284 2200294 GCGGAGGTCAATCCT C-GCCTC GGA GAGGCTG TGTTTTTTTGTGAAA TERM 2172 2200284 - 2200296 + G 75 -9.1 -3.81806 | overlap 2200283 2200281 2200294 CGGAGGTCAATCCTC GCCTC GGA GAGGC TGTGTTTTTTTGTGA TERM 2173 2201376 - 2201427 + G 79 -7.3 -4.57341 | opp_overlap 2201359 2201376, overlap 2201362 2201379 2201426 TCTCTTTCAGCGAAA GGG-TTTCAGGCCAGCTCAGACTCG CTCT CG-GCCTGAGCAGCCCTGGAATTCC TTTTTCGGAAAGGTT TERM 2174 2201379 - 2201423 + G 77 -10 -3.80855 | gap 1, opp_overlap 2201376, overlap 2201376 CTTTCAGCGAAAGGG TTTCAGGCCAGCTCAGACTCG CTCT CG-GCCTGAGCAGCCCTGGAA TTCCTTTTTCGGAAA TERM 2175 2201426 - 2201440 + G 73 -5 -4.7254 | overlap 2201376 AGCAGCCCTGGAATT CCTTTT TCG GAAAGG TTTTTCCTCGGCGGT Cphamn1_2040 2199083 - 2201812 + | surface antigen (D15) TERM 2176 2202339 - 2202322 - g 70 -3.4 -4.90217 | overlap 2202315 CAAACAGACCAAAAA CAACCG TTTTTT CGGTTA TAGCGTCTCCGGCAC TERM 2177 2202709 - 2202695 - g 74 -7.8 -4.18197 | ACCGCCCAGGGAAAA TCCCGC TGG GCGGAA AACACCATAGAGCGT Cphamn1_2041 2202113 - 2202904 + | stationary-phase survival protein SurE Cphamn1_2042 2202908 - 2204599 + | hypothetical protein Cphamn1_2043 2206723 - 2204618 - | thiol-disulfide interchange protein-like protein TERM 2178 2206127 - 2206095 - G 79 -7.8 -4.45117 | gap 1, opp_overlap 2206095, overlap 2206097 TACAGGGGAAAGAAA TCTTTCACGTTCCGG GCAT CCGGACCG-GAAAAA TCAATTTCAAGAAAA TERM 2179 2206694 - 2206664 - G 70 -8.3 -3.67775 | ATCGTCACCGAACAA TCCCGCATGAAGC GGTGA GCTGCATGCAAGA AGACAGAGTGCGATA Cphamn1_2044 2207643 - 2206849 - | cytochrome c assembly protein TERM 2180 2207350 - 2207335 - G 84 -2.4 -5.58179 | overlap 2207337 2207349 GATTACAAGAAAAAA CGCGGC CAAA GCCATG CAGTAGTACTTCAAC TERM 2181 2207704 - 2207686 - R 87 -6 -5.22006 | TTACCACAATAAAAA TTGTCACC TCC GGTTACAA TCCGGAAACACTTCG Cphamn1_2045 2209076 - 2207850 - | hypothetical protein TERM 2182 2209042 - 2209055 + g 72 -8.1 -3.90038 | opp_overlap 2209038, overlap 2209044 TCTTTGAACGACCAC GCGTC AAGG GACGC TTTGACTTCTTTGCT Cphamn1_2046 2209422 - 2209069 - | transcriptional regulator, fis family Cphamn1_2047 2210547 - 2209810 - | hypothetical protein Cphamn1_2048 2211117 - 2210554 - | glutamine amidotransferase of anthranilate synthase Cphamn1_2049 2212546 - 2211293 - | hypothetical protein TERM 2183 2211396 - 2211409 + g 90 -8.1 -5.05601 | CCCATAACAACACGT GCGGT TGCA ACCGC TTTTTCTATCTCATA TERM 2184 2211445 - 2211435 - G 74 -8.2 -4.10657 | TCATAGGGCTGAAAA CCCG ATC CGGG CCCTCCCCAGGAAAA TERM 2185 2212055 - 2212041 - G 70 -4.2 -4.66163 | AGCTCGAGTGAAAAA GCTTCA CGA TGCAGC TCTCCAGGATGAAAA Cphamn1_2050 2213584 - 2212685 - | diacylglycerol kinase catalytic region TERM 2186 2213561 - 2213573 + g 80 -2.7 -5.24129 | overlap 2213538 2213535 AGCGGCCGGATTGAT GATAA AGG TTGTC TTTTTTATCAAGGCG Cphamn1_2051 2214051 - 2213581 - | protein tyrosine phosphatase Cphamn1_2052 2214369 - 2215580 + | hypothetical protein TERM 2187 2216644 - 2216632 - g 83 -3.3 -5.4505 | overlap 2216600 CTCCGGAACAAAAAA GGCAG CTC CTGAC CCTCAGCGAAACCCT TERM 2188 2216703 - 2216678 - g 85 -11.9 -3.70076 | overlap 2216679 TGAAACCCATCGAAA CGAACGGCAGA TAGA TCTGCCGCTCA CCGAAACGGACTCCA TERM 2189 2216702 - 2216679 - g 79 -13.2 -2.81564 | overlap 2216678 GAAACCCATCGAAAC GAACGGCAGA TAGA TCTGCCGCTC ACCGAAACGGACTCC TERM 2190 2216796 - 2216776 - g 76 -7.6 -4.3487 | opp_overlap 2216776 ACAGAGAACTTAAAA TCTGCCTG CTGAT CAAGCAGA ATTATGACAATAACG Cphamn1_2053 2215722 - 2216954 + | regulatory protein LuxR TERM 2191 2217097 - 2217073 - f 80 -4.3 -5.29716 | TGAAGAGAAGAAAAA GCGTATTCTTA CCT TTATAATACGC CAAACAGTTCTACCG TERM 2192 2217675 - 2217651 - g 73 -6.3 -4.45201 | overlap 2217653 2217674 TCTGAGAAAAAAAGA GTTCCTTGCCG CCA CGGCACGAATC GGCTGGATGAATATG TERM 2193 2218315 - 2218299 - g 72 -3.6 -4.88736 | CAGGATGCATAAAAA GCTGGG GCTCT CCAAGC ATCAGTCGATAAAAA Cphamn1_2054 2217136 - 2218359 + | hypothetical protein TERM 2194 2218715 - 2218691 - g 85 -3.6 -5.42259 | overlap 2218694 TTACCTGTAAAAAAA GTATCGTAGA CTTTT TCTACAATTC AGGCCCGCCGTTCAA TERM 2195 2218770 - 2218758 - g 83 -5.5 -5.07567 | CTATAGCGCAAAAAA GGAGA TCG TCCCC ATACTTGAAACATTT Cphamn1_2055 2218417 - 2219655 + | hypothetical protein TERM 2196 2219722 - 2219708 - T 72 -3.4 -4.91511 | overlap 2219709 2219710 ACCTCACGATAAAAA TCCGGC TCT GCCGAT AAGCGCTAAGCGATA Cphamn1_2056 2221101 - 2219728 - | Aldehyde Dehydrogenase TERM 2197 2220199 - 2220222 + g 73 -3.1 -4.92756 | gap 1, overlap 2220199 2220200 CGGCCCTATGTGTAT G-CCGGGATC AAAAG GATCCCCGAC TTTCTTTTTGCTCAT Cphamn1_2057 2221322 - 2221134 - | hypothetical protein Cphamn1_2058 2222300 - 2221341 - | ribosome small subunit-dependent GTPase A TERM 2198 2221769 - 2221785 + g 77 -8.7 -4.09685 | opp_overlap 2221768 GCTCATCCCGAAGAC CGGCAAG GCC TTTGCCG TTTTCCGCACTGACG Cphamn1_2059 2224484 - 2222325 - | ATP-dependent DNA helicase RecG TERM 2199 2222660 - 2222650 - G 83 -5.4 -5.14563 | GCGTGCAGTAAAAAA CAGT ACG ACTG CTCCGCCCCTCTTCC Cphamn1_2060 2224595 - 2224822 + | ribosomal protein L31 TERM 2200 2225125 - 2225111 - g 76 -4.2 -4.99035 | overlap 2225113 GCAGCTACAGAAAAA GCCATC AGG GATGCC AATCTCGGCCTTAAT TERM 2201 2225273 - 2225247 - g 86 -8 -4.68593 | overlap 2225249 2225250 GTGAGGACGCAAAAA TAGCCCTTCGAA ACC TTCGAAGGGAGA TGCTCCATGGCGCCG TERM 2202 2225271 - 2225249 - g 82 -10.6 -3.95883 | overlap 2225247 2225250 GAGGACGCAAAAATA GCCCTTCGAA ACC TTCGAAGGGA GATGCTCCATGGCGC TERM 2203 2225270 - 2225250 - g 83 -14.1 -2.96807 | overlap 2225249 2225247 AGGACGCAAAAATAG CCCTTCGAA ACC TTCGAAGGG AGATGCTCCATGGCG Cphamn1_2061 2224868 - 2225428 + | ribosome recycling factor Cphamn1_2062 2226683 - 2225415 - | chlorophyllide reductase subunit Y Cphamn1_2063 2227180 - 2226683 - | hypothetical protein TERM 2204 2227615 - 2227646 + G 77 -10.8 -3.62572 | TCTGCACATCAGTTT CACTTGCCGGAGCA GGGA TGCTCCAGCAGGCG TTTGCCATGCTCCTG TERM 2205 2227808 - 2227818 + G 76 -5.4 -4.8048 | TCGTTTTCCAGCTGC GAAG CTT CTTC TTTTTCCTGTCAAGG Cphamn1_2064 2227320 - 2228531 + | exodeoxyribonuclease VII, large subunit Cphamn1_2065 2229252 - 2228506 - | 3-deoxy-D-manno-octulosonate cytidylyltransferase Cphamn1_2066 2229615 - 2229310 - | protein of unknown function DUF167 Cphamn1_2067 2229915 - 2229628 - | glutamyl-tRNA(Gln) amidotransferase, C subunit Cphamn1_2068 2231423 - 2230071 - | citrate synthase I Cphamn1_2069 2233124 - 2231616 - | amino acid carrier protein TERM 2206 2233398 - 2233380 - R 72 -7.4 -4.07746 | opp_overlap 2233379 2233380 2233386 TCCGCAAAAACATAA GACTGTCT GCC AGGCAGTC CTTCTCCAGCAGGTT TERM 2207 2233405 - 2233423 + r 89 -10.3 -4.54727 | overlap 2233398 2233418 CAGGCAGTCCTTCTC CAGCAGG TTCAT CCTGCTG TTTTCGTTTGCAGCA Cphamn1_2070 2234530 - 2233478 - | OmpA/MotB domain protein Cphamn1_2071 2235302 - 2234559 - | hypothetical protein TERM 2208 2235348 - 2235360 + H 74 -5.5 -4.67607 | ACTTTTCTCTCTCTA CAGGG CAC CTCTG TTTATTTATTCCGCG Cphamn1_2073 2238259 - 2238903 + | Tetratricopeptide TPR_2 repeat protein TERM 2209 2240105 - 2240089 - g 83 -2.9 -5.43866 | opp_overlap 2240092, overlap 2240092 GAAGCCTGAAAAAAA TAACGAC GCG GCCGTTT TGAAAACACTCCATC TERM 2210 2240102 - 2240092 - g 74 -4.6 -4.79949 | opp_overlap 2240092, overlap 2240089 GCCTGAAAAAAATAA CGAC GCG GCCG TTTTGAAAACACTCC Cphamn1_2074 2238983 - 2240398 + | isochorismate synthase TERM 2211 2241451 - 2241441 - g 100 -8.2 -5.32882 | TATCACGATAAAAAA CCGG GCA CCGG AACACTTCATTGTCA Cphamn1_2075 2240512 - 2242257 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase Cphamn1_2076 2242254 - 2243060 + | alpha/beta hydrolase fold TERM 2212 2243347 - 2243331 - g 79 -7.9 -4.46212 | overlap 2243295 2243294 GCGGCGATCAGAAAA TCCGGGG CGA CGCCGGA TACGCGGACGAAAAA Cphamn1_2077 2243096 - 2243917 + | naphthoate synthase TERM 2213 2243948 - 2244005 + G 100 -10.5 -4.77567 | opp_overlap 2243988 CCATATACCGCTATT CCATCCCTTTTGTCAGGCCGGTTCCCG TTCT CGGCAAAAGCCTCGACACAAGGGATGG TTTTGTTCTGGCCCT TERM 2214 2244444 - 2244466 + G 73 -9 -3.65351 | ACAGGTGCTTGCGCT TCGCTCCGCC TTC GGCGGTGAGA TTTCCCTGCGCCTCG Cphamn1_2078 2243914 - 2245011 + | Mandelate racemase/muconate lactonizing protein TERM 2215 2246005 - 2246043 + G 75 -10.3 -3.35996 | overlap 2246004 TTCTCTTCAAGGGCC CCTGCCTTTTTCAGGGA TATCT TTCCGGAAAAGGGCCGG TTCTCGATACCGATG Cphamn1_2079 2244999 - 2246447 + | O-succinylbenzoate-CoA ligase Cphamn1_2080 2246626 - 2247987 + | protein of unknown function DUF849 TERM 2216 2248126 - 2248096 - f 74 -7.5 -4.2028 | overlap 2248101 TACATACAGAAATAA CCATACAGCCGGA CGATT TCCGACTGTCAGG CGCCGTAGCAACGGT TERM 2217 2249297 - 2249269 - g 86 -11.7 -3.90744 | TCCTTGCTGAAACAA TCGGGTATGGACG CAT CGTCCGTACCGGA AAAGGGAACGTTCAT TERM 2218 2249997 - 2249975 - g 100 -7.1 -5.4756 | gap 1, opp_overlap 2249996, overlap 2249996 AACCGGAAGAAAAAA GCTATG-GTC TGAT GACACATAGC GGTTGGGAACAACCG Cphamn1_2081 2248162 - 2250102 + | Glutathione synthase Cphamn1_2082 2251206 - 2250130 - | NADH:flavin oxidoreductase/NADH oxidase TERM 2219 2251470 - 2251449 - R 76 -10.1 -3.41962 | overlap 2251447 CGCAACAAATTAATA GAGGTGCCC TCAA GGGTACCTC ACGCTCTGGCTGCCT Cphamn1_2083 2251969 - 2251469 - | hypothetical protein Cphamn1_2084 2252717 - 2251971 - | Dihydrodipicolinate reductase Cphamn1_2085 2253401 - 2252814 - | hypothetical protein TERM 2220 2253483 - 2253500 + r 82 -12.7 -2.87931 | opp_overlap 2253481 2253478 TGCAGACATACGATG CGGAGCC TCAG GGCTCCG TCTGTCGAACGTACC Cphamn1_2086 2254399 - 2253521 - | parB-like partition protein Cphamn1_2087 2255230 - 2254433 - | Cobyrinic acid ac-diamide synthase Cphamn1_2088 2255410 - 2256009 + | DNA-3-methyladenine glycosylase Cphamn1_2089 2256082 - 2257464 + | magnesium transporter TERM 2221 2258829 - 2258819 - g 87 -8.2 -4.80453 | TCAGCAGAAAACAAA CCGG ATA CCGG CAAAAAGCACTACTT Cphamn1_2090 2257529 - 2259202 + | Electron-transferring-flavoprotein dehydrogenase TERM 2222 2259378 - 2259391 + G 74 -6.7 -4.29656 | overlap 2259377 TTGATCATCAGTGAC CGGAA AGAA TTCCG TTTTCCGGTTTTCTC TERM 2223 2260075 - 2260041 - g 91 -10.2 -4.4715 | CTTCAATGCAGAAAA CTGATCGCCGGT-CAG ATGAA CTGGACCGGC-ATCAG CCCTCCGGAAACATC Cphamn1_2091 2259204 - 2260283 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Cphamn1_2092 2260720 - 2261394 + | phospholipase/Carboxylesterase TERM 2224 2262482 - 2262468 - g 80 -3.4 -5.31456 | CGAACCGAGAAAAAA GCCGTC AAT GCCGAC TGAGCTCAGGCTTGC TERM 2225 2264226 - 2264208 - g 70 -4.4 -4.68724 | CGAGTCAAGAGAAAA CCGGGCGA AAC TCTCCTGG AGCCCTGAAACCGTT TERM 2226 2265144 - 2265126 - g 71 -6.6 -4.19238 | GGCTGAAGCGGAAAA GTGGCTGG CAC CCAACCTC AACTATACACCGTAG Cphamn1_2093 2261476 - 2265159 + | methionine synthase Cphamn1_2094 2265398 - 2265222 - | hypothetical protein TERM 2227 2265331 - 2265311 - G 70 -11.2 -2.6952 | overlap 2265307 CATGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGGAGTGGAG TERM 2228 2265624 - 2265634 + r 80 -5.4 -5.07523 | AGAGGGCGCCCTTTT GAGA CAG TCTC TTTTCTTTCTCTCTC Cphamn1_2095 2267348 - 2265648 - | Peptidoglycan-binding domain 1 protein TERM 2229 2266963 - 2266953 - G 76 -6.8 -4.56597 | GCGGGCTTTTAAAAA CGGA GTG TCCG GAGAATTTTCATAAA TERM 2230 2267204 - 2267217 + g 74 -2.3 -5.07107 | GGCAGCGAATGTTCT CCCTG ATCT CATGG TTTTTTCCGGATTTC Cphamn1_2096 2268268 - 2267588 - | hypothetical protein TERM 2231 2267895 - 2267885 - G 78 -2.4 -5.24129 | opp_overlap 2267885 GTCGGTCACAAAAAA GCCG AGA CTGC TTTTATATGAACCGG TERM 2232 2268032 - 2268013 - G 70 -2.1 -4.91109 | overlap 2268014 TGTCTATCACAAAAA GCCGT TTTTTGACGG ACGGC TGGTCGTAATCAATG TERM 2233 2268328 - 2268341 + H 71 -2.3 -5.07567 | AGAGGGTAACAGATG CCGGA ATGC TCCTG TTTTTTGCGATGTCA TERM 2234 2268407 - 2268385 - H 76 -4 -5.16572 | opp_overlap 2268388 2268394, overlap 2268387 ACGGAACGTAAAAAA CCCCCCATGG CAA CCATGAGTTG CTCTTCGAAACGGCA TERM 2235 2269354 - 2269340 - g 76 -4.2 -5.00616 | opp_overlap 2269340 CGTCGCCTTAAAAAA GCCG GGCTCGA CGGC TTTCCCCTGAAGACA Cphamn1_2097 2268668 - 2269633 + | hypothetical protein TERM 2236 2269693 - 2269649 - T 74 -7.2 -4.20531 | gap 1, opp_overlap 2269654, overlap 2269633 2269631 2269660 TATACGGATTGAAAA GCCGCATACAAGCCGTCTGTC CCTT GACAGACGGCTTGCA-ATAGT ATCCGGCAGAAAAGA TERM 2237 2269654 - 2269689 + T 89 -14.8 -2.62184 | opp_overlap 2269633 2269631 2269649 2269660 GGATTGAAAAGCCGC ATACAAGCCGTCTGTC CCTT GACAGACGGCTTGCAA TAGTATCCGGCAGAA TERM 2238 2269683 - 2269660 - T 100 -16.8 -3.51563 | opp_overlap 2269654, overlap 2269649 AAAAGCCGCATACAA GCCGTCTGTC CCTT GACAGACGGC TTGCAATAGTATCCG Cphamn1_2098 2270412 - 2269735 - | protein of unknown function DUF975 TERM 2239 2270492 - 2270452 - H 79 -5 -5.08824 | gap 2, opp_overlap 2270462 TCGTTATTCAAAAAA TATGGTGAACTCATGCAGCA AGA TAC-GCATGATTT-ACCATA TGCCGTATGACAAGT Cphamn1_2099 2270499 - 2271074 + | Rhodanese domain protein TERM 2240 2271083 - 2271072 - T 71 -4.4 -4.70046 | opp_overlap 2271073, overlap 2271073 2271075 GAGAAAAGGAGAAAA TGAC AATA GTCA AATGAGTAATGACTA TERM 2241 2271167 - 2271180 + T 77 -6.7 -4.49644 | overlap 2271165 AGCCATTCAGCTATC TGGCT ATCC AGCCA TTTTGACTTTTTCCT Cphamn1_2100 2271942 - 2271280 - | hypothetical protein TERM 2242 2272098 - 2272086 - H 70 -6.3 -4.19276 | overlap 2272091 GGAAAATCCCGAAAA CATCA CGC TGATG CCGCCAATCAACGAG TERM 2243 2272317 - 2272333 + G 80 -2.1 -5.49809 | opp_overlap 2272318, overlap 2272318 2272320 CGCTCTGGGAACAAT ACTGCAG TAC CTGCTGG TTTTTTTCGGATTTC Cphamn1_2101 2272096 - 2272995 + | MscS Mechanosensitive ion channel TERM 2244 2273274 - 2273299 + G 78 -12.7 -2.97747 | gap 1 CAGGACATCCGGGAA TGCCTATGGGAG CGG CTCCCAT-GGCA TATGTGCTCTGGACA Cphamn1_2102 2273180 - 2275186 + | transketolase Cphamn1_2103 2275208 - 2276002 + | 6-phosphogluconolactonase Cphamn1_2104 2277461 - 2276031 - | glucose-6-phosphate 1-dehydrogenase Cphamn1_2105 2278372 - 2277458 - | 6-phosphogluconate dehydrogenase, decarboxylating Cphamn1_2106 2281364 - 2278383 - | multi-sensor hybrid histidine kinase Cphamn1_2107 2282585 - 2281380 - | domain of unknown function DUF1745 TERM 2245 2281499 - 2281489 - G 82 -6.8 -4.89852 | CCATAGGTATAAAAA CCGA TGA TCGG GACATCATATCCGAC Cphamn1_2108 2283977 - 2282835 - | Ion transport 2 domain protein Cphamn1_2109 2284835 - 2284149 - | protein of unknown function DUF541 Cphamn1_2110 2284894 - 2286300 + | transposase IS4 family protein TERM 2246 2286503 - 2286528 + F 70 -6.1 -4.18018 | gap 1 AGGTCGGGATCTCAG GTTGGCTTCGCC TTT GGC-AGGCCCAC TTTTGGCTCGAGAGG Cphamn1_2111 2287112 - 2287909 + | Enoyl-CoA hydratase/isomerase TERM 2247 2288186 - 2288202 + G 79 -9.3 -4.15788 | AAAACTACACACCTG CCCCCCG AAA CGGGGAG TTTCTTGAGAAGGTT TERM 2248 2289329 - 2289317 - g 71 -6.9 -4.17089 | GGCAAAGGGTCAAAA CCGGC AGA ACCGG GGCTTTCTGGCAAAA Cphamn1_2112 2288005 - 2289444 + | hypothetical protein TERM 2249 2290310 - 2290298 - g 82 -7.7 -4.63542 | CACAAGGGCGAAAAA CTGCA CGT TGCAG ATAACAGATAACGAC Cphamn1_2113 2289432 - 2290493 + | hypothetical protein Cphamn1_2114 2290628 - 2290783 + | hypothetical protein Cphamn1_2115 2292435 - 2291296 - | glycosyl transferase group 1 Cphamn1_2116 2293094 - 2292633 - | YbaK/prolyl-tRNA synthetase associated region TERM 2250 2293239 - 2293258 + r 87 -7.8 -4.92239 | opp_overlap 2293239 AAAAGCAATAAAAAA GGCCACCT GAAA AAGTGGCC TTTTTGCATTTTTGG TERM 2251 2293258 - 2293239 - R 100 -10 -5.61689 | opp_overlap 2293239 AAAAGCAATAAAAAA GGCCACCT GAAA AAGTGGCC TTTTTGCATTTTTGG Cphamn1_2117 2293939 - 2293328 - | surface antigen msp4 family protein TERM 2252 2294034 - 2294024 - R 72 -8.2 -3.87583 | AAACGCAAACTCAAA CCCG TTA CGGG AAGAAAACGACAAAA TERM 2253 2294211 - 2294193 - R 100 -16 -5.00765 | opp_overlap 2294197 AATCAATCAGAAAAA GGCAGCGG AGC CCGCTGCC TTGAAGAGTAGAATT Cphamn1_2118 2294847 - 2294239 - | outer surface protein, putative Cphamn1_2119 2295868 - 2295071 - | Patatin TERM 2254 2295722 - 2295711 - G 76 -5.8 -4.65078 | AGAGCGGCAATAAAA GAGC CGAT GCTC GTACCCGACAACGCC Cphamn1_2120 2295993 - 2295865 - | hypothetical protein TERM 2255 2296122 - 2296083 - R 79 -7.9 -4.33739 | gap 1 TAAAAAAGGTCAAAA CCCCATG-GATTCCCGTG TCAAG CACGGGAATGACAGGGAG TGAAGAGGAGTCATG Cphamn1_2121 2297884 - 2296475 - | Aldehyde Dehydrogenase TERM 2256 2296543 - 2296563 + g 79 -9.1 -4.13767 | opp_overlap 2296543 2296546, overlap 2296546 ACGGAGGATAACGGA GAACGTTTT CAG GAAACGTTC TTTTCACATGCACAC TERM 2257 2296693 - 2296728 + g 70 -10.5 -2.92026 | overlap 2296723 GGAACATGAGATCGT TGATACAGACCCCGC CGGACT GCGTGTTCTGTATCA TATACTCTTGAAATG TERM 2258 2297581 - 2297565 - G 70 -2.9 -4.82901 | overlap 2297566 TCCCTGGTATAAAAA CTTCGGC CCG GCTGAAA TCGTAATGGCGTAGG TERM 2259 2297759 - 2297773 + g 86 -2.8 -5.60993 | CAGAAGAAAACGCCT CAGC ATGAGCA GCTG TTTTTTTCTCCAGGA TERM 2260 2298091 - 2298036 - H 77 -3.3 -5.27709 | gap 1, opp_overlap 2298039, overlap 2298037 CGAGAAAAAAACAAA CTGGCTGGTTGGCTGGATAGCTCAAT AGCTA AATG-GCTACTCAGCTAACCAGCTAT TGAGCCGTCGTAACA TERM 2261 2298039 - 2298088 + H 79 -11.6 -3.03441 | gap 1, opp_overlap 2298037 2298036 GAAAAAAACAAACTG GCTGGTTGGCTGGATAGCTCAAT AGCTA AATG-GCTACTCAGCTAACCAGC TATTGAGCCGTCGTA TERM 2262 2298185 - 2298172 - H 77 -6.7 -4.49644 | overlap 2298174 AGGAAAAAGGCAAAA TGGCT GGAT AGCCA GATAGCTGAATGGCT Cphamn1_2123 2299058 - 2301487 + | peptidase S16 lon domain protein Cphamn1_2124 2301487 - 2302341 + | hypothetical protein Cphamn1_2125 2303239 - 2302436 - | tRNA/rRNA methyltransferase (SpoU) Cphamn1_2126 2304036 - 2303236 - | hypothetical protein Cphamn1_2127 2304158 - 2305405 + | peptidase U32 Cphamn1_2128 2305723 - 2305490 - | hypothetical protein Cphamn1_2129 2305837 - 2306916 + | hydrogenase/sulfur reductase, beta subunit Cphamn1_2130 2306970 - 2307794 + | oxidoreductase FAD/NAD(P)-binding domain protein Cphamn1_2131 2307805 - 2308569 + | NADH ubiquinone oxidoreductase 20 kDa subunit TERM 2263 2308659 - 2308684 + G 91 -7.5 -5.06451 | opp_overlap 2308659 AACTGATCGATGCAA CCTGGGCGGTT GTCG AAACGCCAAGG TTTTTTGAAGTGATG TERM 2264 2308885 - 2308839 - g 84 -4.5 -5.31877 | gap 2 ACGCAGCAGAAAAAA TAAGGCTGCTGGCCATGCATGGT GAA ACGCTGCAGAGCCA-C-GCCTTA CACCTGTTCTTTCTT Cphamn1_2132 2308556 - 2309833 + | nickel-dependent hydrogenase large subunit Cphamn1_2133 2310877 - 2310002 - | hypothetical protein TERM 2265 2310434 - 2310447 + g 70 -8.1 -3.67976 | opp_overlap 2310434 TGTCCTGCTGTCAAA GCGCT CAAC AGCGC TTTCCAGTTCATGAA Cphamn1_2134 2311389 - 2310916 - | peptidylprolyl isomerase FKBP-type TERM 2266 2310960 - 2310946 - G 83 -10 -4.18762 | AAGTTCTATCGAAAA GGTCAG ATC CTGACC GGCCAGCGGATGATT Cphamn1_2135 2311622 - 2312305 + | surface antigen msp4 family protein TERM 2267 2312362 - 2312325 - T 100 -14.4 -3.71848 | opp_overlap 2312334, overlap 2312334 CTCCCTGAGCAACAA TACAAAAAAGGAGGCT GGAAAA AGCCTCCTTTTTTGTT TCAACTTCGACCCGC TERM 2268 2312353 - 2312334 - T 100 -9.3 -5.55695 | opp_overlap 2312334, overlap 2312325 CAACAATACAAAAAA GGAGGCT GGAAAA AGCCTCC TTTTTTGTTTCAACT TERM 2269 2312334 - 2312353 + T 100 -9.3 -5.64421 | opp_overlap 2312334 2312325 CAACAATACAAAAAA GGAGGCT GGAAAA AGCCTCC TTTTTTGTTTCAACT Cphamn1_2136 2313426 - 2312377 - | MscS Mechanosensitive ion channel Cphamn1_2137 2314636 - 2313446 - | amine oxidase TERM 2270 2313727 - 2313716 - G 71 -7.2 -4.06055 | opp_overlap 2313715 AGGCCTGAAATGAAA CGCG AAGC CGCG ATAGTTGTCGTCTGG Cphamn1_2138 2315273 - 2314731 - | transferase hexapeptide repeat containing protein Cphamn1_2139 2315644 - 2315339 - | plasmid stabilization system Cphamn1_2140 2315871 - 2315641 - | addiction module component, TIGR02574 family TERM 2271 2316245 - 2316220 - R 93 -11.1 -4.564 | opp_overlap 2316220 2316219 AACTCTAAACGAAAA GAGGCTGACCC TTTC GAGACAGCCTC CTTTTAACATATTTC Cphamn1_2141 2316475 - 2316278 - | hypothetical protein TERM 2272 2316547 - 2316532 - H 100 -3.2 -5.7946 | TTTGCAATAAAAAAA GCCC TCACCTAT GGGC GTAAAGTGTTATATT TERM 2273 2316699 - 2316711 + G 77 -10.5 -3.6106 | GCGACGACCAGCTCA CCGGC AGG GCCGG TTTGAGCGTCTTCGC TERM 2274 2317954 - 2317940 - g 70 -8.6 -3.73072 | opp_overlap 2317940 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG Cphamn1_2142 2316623 - 2318020 + | hypothetical protein TERM 2275 2318201 - 2318179 - T 74 -6.9 -4.30559 | overlap 2318199 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG Cphamn1_2143 2318783 - 2318250 - | hypothetical protein Cphamn1_2144 2318883 - 2320280 + | hypothetical protein TERM 2276 2320463 - 2320441 - f 74 -6.9 -4.30559 | overlap 2320461 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG Cphamn1_2145 2320693 - 2321607 + | NAD-dependent epimerase/dehydratase TERM 2277 2322105 - 2322089 - g 78 -3.7 -5.20328 | TGCCAAAAAAAGAAA TCCTATG AAT CATATGA CAGTTCTTTTCAAAA Cphamn1_2146 2321628 - 2322443 + | glycosyl transferase family 2 Cphamn1_2147 2323335 - 2322445 - | hypothetical protein TERM 2278 2323434 - 2323424 - H 76 -2.6 -5.31275 | GGCGACCATAAAAAA TATT AAC AATA ACATCTATGCAAACC Cphamn1_2149 2323881 - 2324366 + | putative transposase TERM 2279 2325897 - 2325934 + T 71 -10 -2.8382 | gap 1, overlap 2325896 2325898 2325932 GCTTGTTAGGCTTCG TCTTCCCCCTGTGGAAT ACTCA ATTCCAC-GGGGCAGGA GTTTCACCTTGTTTG TERM 2280 2325898 - 2325935 + T 71 -7.8 -3.74238 | gap 1, overlap 2325896 2325897 2325932 CTTGTTAGGCTTCGT CTTC-CCCCTGTGGAAT ACTCA ATTCCACGGGGCAGGAG TTTCACCTTGTTTGA TERM 2281 2326077 - 2326063 - T 79 -11.4 -3.06679 | overlap 2326050 AAGAGCGGTATTGAA GCGCTC AAA GAGCGC ATGGATGACATCTTC Cphamn1_2152 2328606 - 2326816 - | hypothetical protein TERM 2282 2328264 - 2328252 - G 80 -4.7 -5.17576 | overlap 2328253 CATCAAGGGAAAAAA GCCGG TTG CCGGG TTCGAGCGCATGTCG TERM 2283 2328263 - 2328253 - G 70 -8.2 -3.69461 | overlap 2328252 ATCAAGGGAAAAAAG CCGG TTG CCGG GTTCGAGCGCATGTC TERM 2284 2328522 - 2328540 + g 70 -3.1 -4.87892 | GAGAGGTGATTTTTG CCGCT ACGGGCGCA AGCGG TTTCTTTTCTTCGAC TERM 2285 2329036 - 2329011 - R 70 -6.1 -4.18018 | gap 1 CCTCTCGAGCCAAAA GTGGGCCT-GCC AAA GGCGAAGCCAAC CTGAGATCCCGACCT Cphamn1_2153 2330645 - 2329239 - | transposase IS4 family protein Cphamn1_2154 2330933 - 2331907 + | Helix-turn-helix type 11 domain protein TERM 2286 2331962 - 2331986 + GF 81 -12.3 -2.59742 | opp_overlap 2331961 2331958 2331955, overlap 2331961 TGTCGAAACAACAGG TCTATCACCTT TGC GAGGTGATAGA GTTATCGAAGTTGCA TERM 2287 2332376 - 2332391 + GF 70 -9 -3.14344 | opp_overlap 2332371 2332373 CATCAAACTACACCG CGCATC TGGC GATGCG TTGCTGACCGCCATG Cphamn1_2155 2331897 - 2332439 + | DNA-directed DNA polymerase Cphamn1_2156 2332409 - 2333284 + | hypothetical protein Cphamn1_2157 2333372 - 2334778 + | transposase IS4 family protein TERM 2288 2336571 - 2336561 - g 86 -5.4 -5.31545 | AAGAAGAGTAAAAAA GAAC AAC GTTC ACTTGCAGCATCTCT Cphamn1_2158 2335040 - 2336824 + | CRISPR-associated helicase Cas3 TERM 2289 2337217 - 2337207 - g 79 -6.8 -4.68424 | CAATGCAGCCAAAAA GGAC TCT GTCC GTAGAACTGCTGAAG Cphamn1_2159 2336845 - 2338434 + | CRISPR-associated protein, Cse1 family Cphamn1_2160 2338438 - 2338971 + | CRISPR-associated protein, Cse2 family Cphamn1_2161 2338968 - 2339594 + | CRISPR-associated protein, Cse3 family TERM 2290 2339644 - 2339621 - g 71 -6 -4.36554 | opp_overlap 2339625 TATGAGCATAACAAA TCCATTCAGG AACA CCCGAATTGA ATATCATATTCTGCA Cphamn1_2162 2339607 - 2340743 + | CRISPR-associated protein, Cse4 family TERM 2291 2341061 - 2341047 - g 91 -3.4 -5.78622 | overlap 2341048 2341056 TGATTCCAAAAAAAA GCGACG GAA CGCCGG CGGTGAATGGGGGCT Cphamn1_2163 2340740 - 2341441 + | CRISPR-associated protein Cas5 family TERM 2292 2341512 - 2341486 - g 78 -5.8 -4.82901 | overlap 2341467 2341498 GGTTGCTGATAAAAA TCACCCGAGACA CCT TACCGCAGGTGA AGGATAAATACCCGT Cphamn1_2164 2341431 - 2342306 + | CRISPR-associated protein Cas1 Cphamn1_2165 2342309 - 2342626 + | CRISPR-associated protein Cas2 TERM 2293 2342650 - 2342667 + T 71 -9.1 -3.34398 | overlap 2342648 2342651 TAAATTCCATTGTCT TCCCCAC AGGC GTGGGGG TGTTTCCACCAGGGC TERM 2294 2342651 - 2342666 + T 70 -10.4 -2.60496 | overlap 2342650 2342648 AAATTCCATTGTCTT CCCCAC AGGC GTGGGG GTGTTTCCACCAGGG TERM 2295 2342680 - 2342696 + T 83 -10.8 -3.59087 | GGGTGTTTCCACCAG GGCCGC CATGC GCGGCC TTTAGGCGTGGTCTT TERM 2296 2342709 - 2342730 + T 72 -7.9 -3.88498 | overlap 2342711 2342712 GCCTTTAGGCGTGGT CTTCCCCAC AGGC GTGGGGGTG TTTCCTGTATAGCAG TERM 2297 2342711 - 2342728 + T 73 -9.1 -3.53018 | overlap 2342709 2342712 CTTTAGGCGTGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCTGTATAGC TERM 2298 2342712 - 2342727 + T 71 -10.4 -2.71329 | overlap 2342711 2342709 TTTAGGCGTGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCTGTATAG TERM 2299 2342772 - 2342789 + T 73 -9.1 -3.4268 | overlap 2342770 2342773 2342783 ATTACCGACACGTCT TCCCCAC AGGC GTGGGGG TGTTTCCACTTGTGC TERM 2300 2342773 - 2342788 + T 70 -10.4 -2.65126 | overlap 2342772 2342770 2342783 TTACCGACACGTCTT CCCCAC AGGC GTGGGG GTGTTTCCACTTGTG TERM 2301 2342833 - 2342850 + T 71 -9.1 -3.36515 | overlap 2342831 2342834 TTAACCGTCAAGTCT TCCCCAC AGGC GTGGGGG TGTTTCCGCCTGGCC TERM 2302 2342834 - 2342849 + T 70 -10.4 -2.61695 | overlap 2342833 2342831 TAACCGTCAAGTCTT CCCCAC AGGC GTGGGG GTGTTTCCGCCTGGC TERM 2303 2342892 - 2342913 + T 71 -7.9 -3.71687 | overlap 2342894 2342895 GGGCTTCGGGCGTGT CTTCCCCAC AGGC GTGGGGGTG TTTCCGATATTTTGC TERM 2304 2342894 - 2342911 + T 73 -9.1 -3.42976 | overlap 2342892 2342895 GCTTCGGGCGTGTCT TCCCCAC AGGC GTGGGGG TGTTTCCGATATTTT TERM 2305 2342895 - 2342910 + T 70 -10.4 -2.64701 | overlap 2342894 2342892 CTTCGGGCGTGTCTT CCCCAC AGGC GTGGGG GTGTTTCCGATATTT TERM 2306 2342955 - 2342972 + T 71 -9.1 -3.36341 | overlap 2342953 2342956 TTAATCGTTACGTCT TCCCCAC AGGC GTGGGGG TGTTTCCGGACTGTT TERM 2307 2342956 - 2342971 + T 70 -10.4 -2.61322 | overlap 2342955 2342953 TAATCGTTACGTCTT CCCCAC AGGC GTGGGG GTGTTTCCGGACTGT TERM 2308 2343014 - 2343035 + T 74 -7.9 -4.06786 | overlap 2343016 2343017 2343030 CGATGTTTATGTCGT CTTCCCCAC AGGC GTGGGGGTG TTTCTCCTGTTGCGT TERM 2309 2343016 - 2343033 + T 75 -9.1 -3.62291 | overlap 2343014 2343017 2343030 ATGTTTATGTCGTCT TCCCCAC AGGC GTGGGGG TGTTTCTCCTGTTGC TERM 2310 2343017 - 2343032 + T 71 -10.4 -2.76651 | overlap 2343016 2343014 2343030 TGTTTATGTCGTCTT CCCCAC AGGC GTGGGG GTGTTTCTCCTGTTG TERM 2311 2343077 - 2343094 + T 71 -9.1 -3.34398 | opp_overlap 2343064 2343074, overlap 2343075 2343078 AAGGCAAGCAAGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAGCAGGGA TERM 2312 2343078 - 2343093 + T 70 -10.4 -2.60496 | opp_overlap 2343064 2343074, overlap 2343077 2343075 AGGCAAGCAAGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAGCAGGG TERM 2313 2343138 - 2343155 + T 71 -9.1 -3.34398 | overlap 2343136 2343139 AGCTGTTCAGAGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAAAAGGAA TERM 2314 2343139 - 2343154 + T 70 -10.4 -2.60496 | overlap 2343138 2343136 GCTGTTCAGAGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAAAAGGA TERM 2315 2343199 - 2343216 + T 71 -9.1 -3.38522 | overlap 2343197 2343200 CTTACCGAACTGTCT TCCCCAC AGGC GTGGGGG TGTTTCCACTAACTC TERM 2316 2343200 - 2343215 + T 70 -10.4 -2.62792 | overlap 2343199 2343197 TTACCGAACTGTCTT CCCCAC AGGC GTGGGG GTGTTTCCACTAACT TERM 2317 2343260 - 2343277 + T 71 -9.1 -3.39028 | opp_overlap 2343257, overlap 2343258 2343261 GTCCGCGACAAGTCT TCCCCAC AGGC GTGGGGG TGTTTCCGGATTATA TERM 2318 2343261 - 2343276 + T 70 -10.4 -2.62935 | opp_overlap 2343257, overlap 2343260 2343258 TCCGCGACAAGTCTT CCCCAC AGGC GTGGGG GTGTTTCCGGATTAT TERM 2319 2343321 - 2343338 + T 71 -9.1 -3.34894 | opp_overlap 2343311 2343309, overlap 2343319 2343322 CAATAGGGATCGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAGCCCGTT TERM 2320 2343322 - 2343337 + T 70 -10.4 -2.60615 | opp_overlap 2343311 2343309, overlap 2343321 2343319 AATAGGGATCGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAGCCCGT TERM 2321 2343382 - 2343399 + T 73 -9.1 -3.42395 | overlap 2343380 2343383 CTCTCGGCAATGTCT TCCCCAC AGGC GTGGGGG TGTTTCCATGATAGG TERM 2322 2343383 - 2343398 + T 70 -10.4 -2.65116 | overlap 2343382 2343380 TCTCGGCAATGTCTT CCCCAC AGGC GTGGGG GTGTTTCCATGATAG TERM 2323 2343441 - 2343462 + T 76 -7.9 -4.15788 | overlap 2343443 2343444 AGAAATATGGATTGT CTTCCCCAC AGGC GTGGGGGTG TTTCTTGCAAAAGTT TERM 2324 2343443 - 2343460 + T 75 -9.1 -3.6761 | overlap 2343441 2343444 AAATATGGATTGTCT TCCCCAC AGGC GTGGGGG TGTTTCTTGCAAAAG TERM 2325 2343444 - 2343459 + T 71 -10.4 -2.80244 | overlap 2343443 2343441 AATATGGATTGTCTT CCCCAC AGGC GTGGGG GTGTTTCTTGCAAAA TERM 2326 2343502 - 2343523 + T 72 -7.9 -3.91352 | overlap 2343504 2343505 ATTCCTAATGGCCGT CTTCCCCAC AGGC GTGGGGGTG TTTCCTTACAAGTAT TERM 2327 2343504 - 2343521 + T 73 -9.1 -3.54414 | overlap 2343502 2343505 TCCTAATGGCCGTCT TCCCCAC AGGC GTGGGGG TGTTTCCTTACAAGT TERM 2328 2343505 - 2343520 + T 71 -10.4 -2.72166 | overlap 2343504 2343502 CCTAATGGCCGTCTT CCCCAC AGGC GTGGGG GTGTTTCCTTACAAG TERM 2329 2343563 - 2343584 + T 74 -7.9 -4.00882 | overlap 2343565 2343566 2343579 CAGTCGGTCCCGGGT CTTCCCCAC AGGC GTGGGGGTG TTTCCTCTTGTGTTG TERM 2330 2343565 - 2343582 + T 75 -9.1 -3.57873 | overlap 2343563 2343566 2343579 GTCGGTCCCGGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCTCTTGTGT TERM 2331 2343566 - 2343581 + T 71 -10.4 -2.7364 | overlap 2343565 2343563 2343579 TCGGTCCCGGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCTCTTGTG TERM 2332 2343624 - 2343645 + T 71 -7.9 -3.84451 | overlap 2343626 2343627 CAAGTCTGAGTCGGT CTTCCCCAC AGGC GTGGGGGTG TTTCCATTTCAAGAA TERM 2333 2343626 - 2343643 + T 73 -9.1 -3.50832 | overlap 2343624 2343627 AGTCTGAGTCGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCATTTCAAG TERM 2334 2343627 - 2343642 + T 71 -10.4 -2.70017 | overlap 2343626 2343624 GTCTGAGTCGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCATTTCAA TERM 2335 2343685 - 2343706 + T 72 -7.9 -3.96148 | overlap 2343687 2343688 AATCACCATCGGTGT CTTCCCCAC AGGC GTGGGGGTG TTTCTCGTGCCAAAA TERM 2336 2343687 - 2343704 + T 75 -9.1 -3.57406 | overlap 2343685 2343688 TCACCATCGGTGTCT TCCCCAC AGGC GTGGGGG TGTTTCTCGTGCCAA TERM 2337 2343688 - 2343703 + T 71 -10.4 -2.74122 | overlap 2343687 2343685 CACCATCGGTGTCTT CCCCAC AGGC GTGGGG GTGTTTCTCGTGCCA TERM 2338 2343748 - 2343765 + T 71 -9.1 -3.36073 | overlap 2343746 2343749 ATCGTCATAGGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAGCGTCTG TERM 2339 2343749 - 2343764 + T 70 -10.4 -2.61322 | overlap 2343748 2343746 TCGTCATAGGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAGCGTCT TERM 2340 2343807 - 2343828 + T 76 -7.9 -4.24745 | overlap 2343809 2343810 AAAAAAGATGTTTGT CTTCCCCAC AGGC GTGGGGGTG TTTCTCTTGGTGATC TERM 2341 2343809 - 2343826 + T 77 -9.1 -3.71627 | overlap 2343807 2343810 AAAAGATGTTTGTCT TCCCCAC AGGC GTGGGGG TGTTTCTCTTGGTGA TERM 2342 2343810 - 2343825 + T 71 -10.4 -2.82253 | overlap 2343809 2343807 AAAGATGTTTGTCTT CCCCAC AGGC GTGGGG GTGTTTCTCTTGGTG TERM 2343 2343868 - 2343889 + T 72 -7.9 -3.89346 | overlap 2343870 2343871 CCGTCCTGGTATTGT CTTCCCCAC AGGC GTGGGGGTG TTTCTCCGGTAAAGA TERM 2344 2343870 - 2343887 + T 73 -9.1 -3.53733 | overlap 2343868 2343871 GTCCTGGTATTGTCT TCCCCAC AGGC GTGGGGG TGTTTCTCCGGTAAA TERM 2345 2343871 - 2343886 + T 71 -10.4 -2.71918 | overlap 2343870 2343868 TCCTGGTATTGTCTT CCCCAC AGGC GTGGGG GTGTTTCTCCGGTAA TERM 2346 2343929 - 2343950 + T 76 -7.9 -4.24342 | overlap 2343931 2343932 GATCACCGCCGACGT CTTCCCCAC AGGC GTGGGGGTG TTTCTTGCTCCGACG TERM 2347 2343931 - 2343948 + T 77 -9.1 -3.72374 | overlap 2343929 2343932 TCACCGCCGACGTCT TCCCCAC AGGC GTGGGGG TGTTTCTTGCTCCGA TERM 2348 2343932 - 2343947 + T 71 -10.4 -2.82942 | overlap 2343931 2343929 CACCGCCGACGTCTT CCCCAC AGGC GTGGGG GTGTTTCTTGCTCCG TERM 2349 2343990 - 2344011 + T 71 -7.9 -3.85817 | overlap 2343992 2343993 TTTCCTGTATACGGT CTTCCCCAC AGGC GTGGGGGTG TTTCTACCGGCAGCT TERM 2350 2343992 - 2344009 + T 73 -9.1 -3.51934 | overlap 2343990 2343993 TCCTGTATACGGTCT TCCCCAC AGGC GTGGGGG TGTTTCTACCGGCAG TERM 2351 2343993 - 2344008 + T 71 -10.4 -2.70946 | overlap 2343992 2343990 CCTGTATACGGTCTT CCCCAC AGGC GTGGGG GTGTTTCTACCGGCA TERM 2352 2344051 - 2344072 + T 71 -7.9 -3.80893 | overlap 2344053 2344054 TGAAAAAGCGTTTGT CTTCCCCAC AGGC GTGGGGGTG TTTCCGTTGTAACCT TERM 2353 2344053 - 2344070 + T 73 -9.1 -3.48766 | overlap 2344051 2344054 AAAAAGCGTTTGTCT TCCCCAC AGGC GTGGGGG TGTTTCCGTTGTAAC TERM 2354 2344054 - 2344069 + T 70 -10.4 -2.68778 | overlap 2344053 2344051 AAAAGCGTTTGTCTT CCCCAC AGGC GTGGGG GTGTTTCCGTTGTAA TERM 2355 2344112 - 2344133 + T 76 -7.9 -4.20086 | overlap 2344114 2344115 GCGATTTGCGGCCGT CTTCCCCAC AGGC GTGGGGGTG TTTCTCTATATGTCT TERM 2356 2344114 - 2344131 + T 75 -9.1 -3.68786 | overlap 2344112 2344115 GATTTGCGGCCGTCT TCCCCAC AGGC GTGGGGG TGTTTCTCTATATGT TERM 2357 2344115 - 2344130 + T 71 -10.4 -2.80187 | overlap 2344114 2344112 ATTTGCGGCCGTCTT CCCCAC AGGC GTGGGG GTGTTTCTCTATATG TERM 2358 2344175 - 2344192 + T 71 -9.1 -3.34398 | overlap 2344173 2344176 AACACGACGCCGTCT TCCCCAC AGGC GTGGGGG TGTTTCCCAGCCCCG TERM 2359 2344176 - 2344191 + T 70 -10.4 -2.60496 | overlap 2344175 2344173 ACACGACGCCGTCTT CCCCAC AGGC GTGGGG GTGTTTCCCAGCCCC TERM 2360 2344234 - 2344255 + T 74 -7.9 -4.12532 | overlap 2344236 2344237 GGGCGCATCTAACGT CTTCCCCAC AGGC GTGGGGGTG TTTCTATGTAAAAGA TERM 2361 2344236 - 2344253 + T 75 -9.1 -3.65996 | overlap 2344234 2344237 GCGCATCTAACGTCT TCCCCAC AGGC GTGGGGG TGTTTCTATGTAAAA TERM 2362 2344237 - 2344252 + T 71 -10.4 -2.79116 | overlap 2344236 2344234 CGCATCTAACGTCTT CCCCAC AGGC GTGGGG GTGTTTCTATGTAAA TERM 2363 2344288 - 2344269 - T 70 -6.4 -4.18018 | TGTTTCTATGTAAAA GATCGTTG TTTT CTACGATC CCACGTCTTCCCCAC TERM 2364 2344295 - 2344316 + T 71 -7.9 -3.85698 | overlap 2344297 2344298 TCTACGATCCCACGT CTTCCCCAC AGGC GTGGGGGTG TTTCTGGCAAGGAGC TERM 2365 2344297 - 2344314 + T 73 -9.1 -3.51934 | overlap 2344295 2344298 TACGATCCCACGTCT TCCCCAC AGGC GTGGGGG TGTTTCTGGCAAGGA TERM 2366 2344298 - 2344313 + T 71 -10.4 -2.70946 | overlap 2344297 2344295 ACGATCCCACGTCTT CCCCAC AGGC GTGGGG GTGTTTCTGGCAAGG TERM 2367 2344356 - 2344377 + T 72 -7.9 -3.96892 | overlap 2344358 2344359 CCACTGGCATCGCGT CTTCCCCAC AGGC GTGGGGGTG TTTCTACTGCAAGTT TERM 2368 2344358 - 2344375 + T 75 -9.1 -3.57406 | overlap 2344356 2344359 ACTGGCATCGCGTCT TCCCCAC AGGC GTGGGGG TGTTTCTACTGCAAG TERM 2369 2344359 - 2344374 + T 71 -10.4 -2.74122 | overlap 2344358 2344356 CTGGCATCGCGTCTT CCCCAC AGGC GTGGGG GTGTTTCTACTGCAA TERM 2370 2344419 - 2344436 + T 71 -9.1 -3.35597 | overlap 2344417 2344420 CGATTTAGTGGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCCGCCTGGC TERM 2371 2344420 - 2344435 + T 70 -10.4 -2.61144 | overlap 2344419 2344417 GATTTAGTGGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCCGCCTGG TERM 2372 2344450 - 2344466 + T 83 -10.8 -3.57615 | GGTGTTTCCCGCCTG GCCCGC TTTAC GCGGGC TTTAGGCGGTCTTCC TERM 2373 2344477 - 2344498 + T 74 -7.9 -4.02253 | overlap 2344479 2344480 CGGGCTTTAGGCGGT CTTCCCCAC AGGC GTGGGGGTG TTTCTCAATTCTTCG TERM 2374 2344479 - 2344496 + T 75 -9.1 -3.59481 | overlap 2344477 2344480 GGCTTTAGGCGGTCT TCCCCAC AGGC GTGGGGG TGTTTCTCAATTCTT TERM 2375 2344480 - 2344495 + T 71 -10.4 -2.74604 | overlap 2344479 2344477 GCTTTAGGCGGTCTT CCCCAC AGGC GTGGGG GTGTTTCTCAATTCT TERM 2376 2344540 - 2344557 + T 71 -9.1 -3.34398 | overlap 2344538 2344541 CGCCCCATTGGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCCGGGAAAA TERM 2377 2344541 - 2344556 + T 70 -10.4 -2.60496 | overlap 2344540 2344538 GCCCCATTGGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCCGGGAAA TERM 2378 2344599 - 2344620 + T 74 -7.9 -4.15143 | overlap 2344601 2344602 GGAAAAGCGATCAGT CTTCCCCAC AGGC GTGGGGGTG TTTCTATGATTACTT TERM 2379 2344601 - 2344618 + T 75 -9.1 -3.66117 | overlap 2344599 2344602 AAAAGCGATCAGTCT TCCCCAC AGGC GTGGGGG TGTTTCTATGATTAC TERM 2380 2344602 - 2344617 + T 71 -10.4 -2.78947 | overlap 2344601 2344599 AAAGCGATCAGTCTT CCCCAC AGGC GTGGGG GTGTTTCTATGATTA TERM 2381 2344662 - 2344679 + T 71 -9.1 -3.34398 | overlap 2344660 2344663 TTTAGAAAATTGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAAAAGCGA TERM 2382 2344663 - 2344678 + T 70 -10.4 -2.60496 | overlap 2344662 2344660 TTAGAAAATTGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAAAAGCG TERM 2383 2344721 - 2344742 + T 71 -7.9 -3.83502 | overlap 2344723 2344724 TGAAAGATCAGATGT CTTCCCCAC AGGC GTGGGGGTG TTTCCTGTAAAACTA TERM 2384 2344723 - 2344740 + T 73 -9.1 -3.5032 | overlap 2344721 2344724 AAAGATCAGATGTCT TCCCCAC AGGC GTGGGGG TGTTTCCTGTAAAAC TERM 2385 2344724 - 2344739 + T 71 -10.4 -2.69871 | overlap 2344723 2344721 AAGATCAGATGTCTT CCCCAC AGGC GTGGGG GTGTTTCCTGTAAAA TERM 2386 2344782 - 2344803 + T 76 -7.9 -4.24285 | overlap 2344784 2344785 CGATTATTGGTGAGT CTTCCCCAC AGGC GTGGGGGTG TTTCTTGCGTATATC TERM 2387 2344784 - 2344801 + T 75 -9.1 -3.71378 | overlap 2344782 2344785 ATTATTGGTGAGTCT TCCCCAC AGGC GTGGGGG TGTTTCTTGCGTATA TERM 2388 2344785 - 2344800 + T 71 -10.4 -2.82104 | overlap 2344784 2344782 TTATTGGTGAGTCTT CCCCAC AGGC GTGGGG GTGTTTCTTGCGTAT TERM 2389 2344845 - 2344862 + T 71 -9.1 -3.40597 | overlap 2344843 2344846 TTTCATTGTAGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCCTCGCGAA TERM 2390 2344846 - 2344861 + T 70 -10.4 -2.64144 | overlap 2344845 2344843 TTCATTGTAGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCCTCGCGA TERM 2391 2344906 - 2344923 + T 71 -9.1 -3.36694 | overlap 2344904 2344907 TTCGGCTTTTCGTCT TCCCCAC AGGC GTGGGGG TGTTTCCGGGTGGCT TERM 2392 2344907 - 2344922 + T 70 -10.4 -2.61695 | overlap 2344906 2344904 TCGGCTTTTCGTCTT CCCCAC AGGC GTGGGG GTGTTTCCGGGTGGC TERM 2393 2344967 - 2344984 + T 71 -9.1 -3.34715 | overlap 2344965 2344968 GATCAATGATCGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAGCGCGTG TERM 2394 2344968 - 2344983 + T 70 -10.4 -2.60615 | overlap 2344967 2344965 ATCAATGATCGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAGCGCGT TERM 2395 2345028 - 2345045 + T 71 -9.1 -3.34398 | overlap 2345026 2345029 CTTTCTCTGAGGTCT TCCCCAC AGGC GTGGGGG TGTTTCCAGGACAAC TERM 2396 2345029 - 2345044 + T 70 -10.4 -2.60496 | overlap 2345028 2345026 TTTCTCTGAGGTCTT CCCCAC AGGC GTGGGG GTGTTTCCAGGACAA TERM 2397 2345089 - 2345106 + T 71 -9.1 -3.41222 | overlap 2345087 2345090 CAAGAGGCATTGTCT TCCCCAC AGGC GTGGGGG TGTTTCCCGTTACGG TERM 2398 2345090 - 2345105 + T 70 -10.4 -2.64412 | overlap 2345089 2345087 AAGAGGCATTGTCTT CCCCAC AGGC GTGGGG GTGTTTCCCGTTACG TERM 2399 2345148 - 2345169 + T 71 -7.9 -3.85698 | overlap 2345150 2345151 AACGGCAGCGGTAGT CTTCCCCAC AGGC GTGGGGGTG TTTCTACAGCGACCA TERM 2400 2345150 - 2345167 + T 73 -9.1 -3.51934 | overlap 2345148 2345151 CGGCAGCGGTAGTCT TCCCCAC AGGC GTGGGGG TGTTTCTACAGCGAC TERM 2401 2345151 - 2345166 + T 71 -10.4 -2.70946 | overlap 2345150 2345148 GGCAGCGGTAGTCTT CCCCAC AGGC GTGGGG GTGTTTCTACAGCGA TERM 2402 2345209 - 2345230 + T 74 -7.9 -4.08689 | overlap 2345211 2345212 GCAGCTTGATGCCGT CTTCCCCAC AGGC GTGGGGGTG TTTCCTTCTTCCATC TERM 2403 2345211 - 2345228 + T 75 -9.1 -3.62957 | overlap 2345209 2345212 AGCTTGATGCCGTCT TCCCCAC AGGC GTGGGGG TGTTTCCTTCTTCCA TERM 2404 2345212 - 2345227 + T 71 -10.4 -2.77051 | overlap 2345211 2345209 GCTTGATGCCGTCTT CCCCAC AGGC GTGGGG GTGTTTCCTTCTTCC TERM 2405 2345270 - 2345291 + T 71 -7.9 -3.72576 | overlap 2345272 2345273 ATATGCCGGGTGTGT CTTCCCCAC AGGC GTGGGGGTG TTTCATAACACCGGG TERM 2406 2345272 - 2345289 + T 73 -9.1 -3.44848 | overlap 2345270 2345273 ATGCCGGGTGTGTCT TCCCCAC AGGC GTGGGGG TGTTTCATAACACCG TERM 2407 2345273 - 2345288 + T 70 -10.4 -2.66695 | overlap 2345272 2345270 TGCCGGGTGTGTCTT CCCCAC AGGC GTGGGG GTGTTTCATAACACC TERM 2408 2345331 - 2345352 + T 72 -7.9 -3.98083 | overlap 2345333 2345334 ATGATGAGCGTAAGT CTTCCCCAC AGGC GTGGGGGTG TTTCTGCATTCCGTC TERM 2409 2345333 - 2345350 + T 75 -9.1 -3.57808 | overlap 2345331 2345334 GATGAGCGTAAGTCT TCCCCAC AGGC GTGGGGG TGTTTCTGCATTCCG TERM 2410 2345334 - 2345349 + T 71 -10.4 -2.74203 | overlap 2345333 2345331 ATGAGCGTAAGTCTT CCCCAC AGGC GTGGGG GTGTTTCTGCATTCC TERM 2411 2345382 - 2345414 + T 89 -8.3 -4.77795 | overlap 2345384 2345396 CAGGGCGCCTCCATA CCCCCCCCCGTCT TCCCCAC AGGCGTGGGGGTG TTTCTGTTTTTTTTG TERM 2412 2345384 - 2345412 + T 81 -9.5 -3.93225 | overlap 2345382 2345396 GGGCGCCTCCATACC CCCCCCCGTCT TCCCCAC AGGCGTGGGGG TGTTTCTGTTTTTTT TERM 2413 2345396 - 2345411 + T 72 -10.4 -2.92275 | overlap 2345384 2345382 ACCCCCCCCCGTCTT CCCCAC AGGC GTGGGG GTGTTTCTGTTTTTT TERM 2414 2345590 - 2345608 + T 79 -11.7 -2.52543 | TCGATACCTCCACGT CGCACCC CTCGC GGGTGCG TGGATTGAACAACCT Cphamn1_2166 2347021 - 2346068 - | HipA domain protein Cphamn1_2167 2347348 - 2347025 - | HipA N-terminal domain protein Cphamn1_2168 2347558 - 2347352 - | transcriptional regulator, XRE family Cphamn1_2169 2347869 - 2347573 - | hypothetical protein TERM 2415 2348038 - 2348028 - H 71 -2.4 -5.11613 | ACATCATTGAAAAAA CTGC ATA GCTG ACATCATAGACCTCA Cphamn1_2170 2348614 - 2349348 + | ABC transporter-related protein TERM 2416 2349646 - 2349612 - g 100 -2.9 -6.06723 | TTCGTGAAAAAAAAA GCC-TCGTTACCACCTC TCG GAC-TGGTAACGGTGGC GGCTATGCTGCCCCG TERM 2417 2349998 - 2349979 - g 73 -3.4 -4.9725 | ATCCCGACATAAAAA CCTCTCCG GTTC CGCAGTGG GAGCTGCTGGACATG TERM 2418 2350294 - 2350270 - g 100 -4.3 -5.75945 | AGGCGTCAAAAAAAA CATCCAGAAAA TTC TTTACCGAATG TTCCATCAACATAGC Cphamn1_2171 2349531 - 2351060 + | Radical SAM domain protein Cphamn1_2172 2351069 - 2352478 + | metal dependent phosphohydrolase Cphamn1_2173 2352552 - 2352899 + | hypothetical protein Cphamn1_2174 2352919 - 2353704 + | alpha/beta hydrolase fold Cphamn1_2175 2355026 - 2353719 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2419 2355255 - 2355212 - R 83 -11.2 -3.39618 | opp_overlap 2355219 2355224 2355251, overlap 2355215 2355224 GTTAACGGGAAAAAG GCACAAAAAAAAGCAACTCC TCAA GGAGCTGCTTTTCTTCGTAG TACCTGATATTCTCA TERM 2420 2355252 - 2355215 - R 89 -15.1 -2.85019 | opp_overlap 2355219 2355224 2355251, overlap 2355212 2355224 AACGGGAAAAAGGCA CAAAAAAAAGCAACTCC TCAA GGAGCTGCTTTTCTTCG TAGTACCTGATATTC TERM 2421 2355243 - 2355224 - R 100 -10 -5.97575 | opp_overlap 2355219 2355224, overlap 2355215 2355212 AAGGCACAAAAAAAA GCAACTCC TCAA GGAGCTGC TTTTCTTCGTAGTAC TERM 2422 2355224 - 2355243 + r 85 -7.8 -4.73613 | opp_overlap 2355224 2355215 2355212, overlap 2355219 AAGGCACAAAAAAAA GCAACTCC TCAA GGAGCTGC TTTTCTTCGTAGTAC Cphamn1_2176 2355469 - 2355272 - | ribosomal protein S21 Cphamn1_2177 2356141 - 2355500 - | hypothetical protein TERM 2423 2355856 - 2355879 + g 100 -5.3 -5.80364 | gap 1, opp_overlap 2355861 ACTGATTTTCAGCGG CAGAAGGCTG CTCCC CGGCCT-CTG TTTTTTTCTTACCCT Cphamn1_2178 2357808 - 2356408 - | Cysteine synthase TERM 2424 2357496 - 2357506 + g 71 -6.8 -4.14243 | opp_overlap 2357487 CACCAAGCGCCCTGA GCAG TTG CTGC TTTTCGCGTGAAATC Cphamn1_2179 2357862 - 2358035 + | hypothetical protein TERM 2425 2358915 - 2358896 - g 77 -10 -3.76568 | TCAGTTACAACAGAA CCTGGACA GCGC CGTCCAGG CGGAGAATAGCGACT TERM 2426 2359078 - 2359059 - g 70 -9.2 -3.56643 | GGTAGATCTTGGAAA CGACCGGG ATGT CCGGGTCG GGGACGATGCACTGC Cphamn1_2180 2358088 - 2359203 + | alanine racemase Cphamn1_2181 2359207 - 2359698 + | ComEA-related protein TERM 2427 2359744 - 2359710 - g 73 -11.4 -2.95809 | opp_overlap 2359737, overlap 2359709 2359712 ATAAATGAGAACAAC CAGCCATGCATGCGCC ATA GACGCATACGCGACTG CGGTAGCAAGCATCG Cphamn1_2182 2359699 - 2360574 + | hypothetical protein Cphamn1_2183 2361618 - 2360569 - | aspartate-semialdehyde dehydrogenase TERM 2428 2360695 - 2360709 + g 76 -5.7 -4.7254 | CCTCCGTATGCGCCC GACGA ATACC TCGTC TTTTTCATAGGAAGT Cphamn1_2184 2362789 - 2361749 - | TIM-barrel protein, nifR3 family TERM 2429 2362462 - 2362452 - G 70 -8.2 -3.72576 | opp_overlap 2362452 GGTTCCCTGAGCAAA GCGG CTC CCGC CCCTTTACCTGCGAC TERM 2430 2362522 - 2362554 + g 100 -20.6 -3.05463 | opp_overlap 2362514, overlap 2362524 CAAGGTAGTCCGGTT TGGCCGATGCGGCG ATGAC CGCCGCCTCGGCCA TTGCCTCCCCGGAAT Cphamn1_2185 2363850 - 2362798 - | recA protein TERM 2431 2363804 - 2363818 + g 73 -2.7 -4.91109 | AGCTGTTTCAGCTTT GCCGG ATCTG CCGTC TTTTTCTCCTGCACA Cphamn1_2186 2365015 - 2364020 - | NAD-dependent epimerase/dehydratase TERM 2432 2364240 - 2364225 - G 73 -6 -4.56597 | opp_overlap 2364229 2364230 TTGCCTGCCGAAAAA GCGGCC CTCG GGCTGC TCCCGGGGATTTCCC TERM 2433 2365110 - 2365132 + r 74 -6.9 -4.30559 | overlap 2365095 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_2187 2366688 - 2365291 - | hypothetical protein TERM 2434 2365357 - 2365371 + g 70 -8.6 -3.73072 | opp_overlap 2365357 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_2188 2366909 - 2368183 + | peptidase M16 domain protein TERM 2435 2368386 - 2368366 - f 77 -11.2 -2.6952 | overlap 2368362 CAGGACAAGAATGGA TTCCCGTG TCAAG CACGGGAA TGACAGGAAGTGGAG TERM 2436 2368563 - 2368551 - f 85 -7.7 -4.614 | opp_overlap 2368550, overlap 2368553 GGGAATGACAGAAAA GGGAA CGT TTCCC GTCCTTGTACTCCCT TERM 2437 2368776 - 2368801 + F 77 -9.9 -3.65606 | opp_overlap 2368776 2368775, overlap 2368774 TTGTTTATGAGAAAG CCTCTAAGAAT GTGA ATTTTTAGAGG TACTTTTTTTTCTGC TERM 2438 2369534 - 2369518 - g 71 -10.9 -3.10761 | overlap 2369516 2369514 AGGCGAAGAGACATA CCGTTAC GAA GTAACGG TCAAAGAGGTCAAGC Cphamn1_2189 2368844 - 2370127 + | trigger factor Cphamn1_2190 2371077 - 2370199 - | nicotinate-nucleotide pyrophosphorylase TERM 2439 2370852 - 2370828 - G 78 -9.9 -3.86015 | TATCTCCTTCAGAAA CCTGCGCCCCG TCA CAGACCGCAGG ATTGACGACTATATC Cphamn1_2191 2371259 - 2371639 + | dihydroneopterin aldolase Cphamn1_2192 2371647 - 2372171 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 2440 2372202 - 2372212 + T 72 -8.2 -3.86194 | opp_overlap 2372173 2372209, overlap 2372209 TAAGGAACACCGCGA GCGG AAA CCGC TTTGTAAAACCGATT TERM 2441 2372364 - 2372384 + T 77 -11.2 -2.6952 | overlap 2372359 CTCCACTCCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGTCATG Cphamn1_2193 2373678 - 2372524 - | arsenite-activated ATPase ArsA Cphamn1_2194 2375387 - 2373708 - | hypothetical protein TERM 2442 2375673 - 2375702 + r 84 -9.4 -4.18094 | gap 1, opp_overlap 2375673 TCTTAAAATAAAAAA GGCAGTGGTTAGC TTTAC GCTA-TCACTGCC TTTTCAGATAGTTTG TERM 2443 2375702 - 2375673 - R 100 -7.2 -5.79595 | gap 1, opp_overlap 2375673 TCTTAAAATAAAAAA GGCAGTGGTTAGC TTTAC GCTATC-ACTGCC TTTTCAGATAGTTTG Cphamn1_2195 2375972 - 2375727 - | bacteriochlorophyll C binding protein Cphamn1_2196 2376528 - 2376109 - | chlorosome envelope protein C Cphamn1_2197 2376650 - 2376525 - | hypothetical protein Cphamn1_2198 2377867 - 2376650 - | arsenite-activated ATPase ArsA TERM 2444 2378445 - 2378465 + G 80 -4.7 -5.06414 | TGCTGATATCCGGCG GTATCGG AACCGCA CCGATGC TTTTTCTTGAAAAGA TERM 2445 2378853 - 2378809 - g 78 -5.8 -4.78149 | overlap 2378837 TGTAGAACTTAAAAA CCTGTCCGGCCAC-GGAACATC AAC GATACTCCTGTGTCAGGA-AGG CCCTGTCATCGAAGC Cphamn1_2199 2378090 - 2378887 + | oxidoreductase FAD/NAD(P)-binding domain protein Cphamn1_2200 2378919 - 2379392 + | single-strand binding protein TERM 2446 2379584 - 2379600 + G 85 -3.7 -5.40072 | opp_overlap 2379586, overlap 2379586 GACATCGCATCGGGA AATATCG CGC CGATATA TTTTTTTCACGGCCC TERM 2447 2379586 - 2379598 + G 71 -6.3 -4.34482 | opp_overlap 2379586, overlap 2379584 CATCGCATCGGGAAA TATCG CGC CGATA TATTTTTTTCACGGC Cphamn1_2201 2379551 - 2380597 + | DNA polymerase III, delta subunit Cphamn1_2202 2381775 - 2380780 - | NAD-dependent epimerase/dehydratase TERM 2448 2381469 - 2381491 + g 73 -2.7 -5.00616 | gap 1 TCAGTCCCGGATTCA CCTGC-AGAA CGGT TTCAAGCAGG TTTTTTACCGGAAGA TERM 2449 2381850 - 2381837 - H 82 -5.3 -5.19212 | AGCACTATTAAAAAA GAAGT TACC ACTTC AGAAAAAAACAAAAT Cphamn1_2203 2382023 - 2383225 + | 8-amino-7-oxononanoate synthase TERM 2450 2383314 - 2383348 + F 100 -8.6 -5.5353 | opp_overlap 2383314 GAGGTAGCCTGCAAA CCATACCGTCCCTG CGTGTTT CAGGAACAGTATGG TTTTTTCTTCATATG TERM 2451 2383348 - 2383314 - f 100 -13 -3.55761 | opp_overlap 2383314 GAGGTAGCCTGCAAA CCATACCGTCCCTG CGTGTTT CAGGAACAGTATGG TTTTTTCTTCATATG TERM 2452 2385502 - 2385514 + G 83 -5.5 -5.06816 | overlap 2385500 CAACTACGACAACCT GATCG AAT CGGTC TTTTTATTCAACAGT Cphamn1_2204 2383490 - 2386027 + | TonB-dependent receptor TERM 2453 2386062 - 2386085 + F 100 -13.2 -5.52986 | opp_overlap 2386062 2386065 GTCATTTCGCGCAAA CAGGCCCCTT GAAA AAGGGGCTTG TTTTTTTCCTCCACT TERM 2454 2386085 - 2386062 - f 81 -11 -3.53811 | opp_overlap 2386062, overlap 2386065 GTCATTTCGCGCAAA CAGGCCCCTT GAAA AAGGGGCTTG TTTTTTTCCTCCACT TERM 2455 2386082 - 2386065 - f 77 -11.3 -2.60615 | opp_overlap 2386062, overlap 2386062 ATTTCGCGCAAACAG GCCCCTT GAAA AAGGGGC TTGTTTTTTTCCTCC TERM 2456 2389467 - 2389442 - g 76 -8.3 -4.25256 | gap 1, opp_overlap 2389442, overlap 2389439 TGTTCATCAAAAGAA CCAGTTTC-GCC TAT GGCGGAAACAGG TATGGTGACCAGCAG Cphamn1_2205 2386249 - 2390058 + | magnesium chelatase, H subunit TERM 2457 2390090 - 2390115 + F 82 -12.7 -2.93623 | gap 1, opp_overlap 2390090, overlap 2390087 2390085 2390092 GGTTCTCCGCGAAAA GAGGCTGTCTCA AAA TG-GACAGCCTC TCGTATTTTGAGCAG TERM 2458 2390115 - 2390090 - f 100 -12.7 -4.07568 | gap 1, opp_overlap 2390090 2390087 2390085 2390092 GGTTCTCCGCGAAAA GAGGCTGTCTCA AAA TG-GACAGCCTC TCGTATTTTGAGCAG TERM 2459 2390092 - 2390113 + F 71 -9.5 -3.01785 | gap 1, opp_overlap 2390090, overlap 2390090 2390087 2390085 TTCTCCGCGAAAAGA GGCTGTCTCA AAA TG-GACAGCC TCTCGTATTTTGAGC Cphamn1_2206 2390104 - 2390412 + | hypothetical protein TERM 2460 2391676 - 2391716 + G 78 -2.6 -5.24129 | gap 1, opp_overlap 2391712, overlap 2391679 GCTGATAGACCGGTA TGGGGCTTCTTTTACGGGA CGAC TCCCGCAAAA-AGACCCGA TTTTTTATCCGGACA Cphamn1_2207 2391116 - 2394949 + | magnesium chelatase, H subunit Cphamn1_2208 2394990 - 2395691 + | magnesium protoporphyrin O-methyltransferase TERM 2461 2396729 - 2396752 + G 76 -11 -3.27436 | overlap 2396721 2396727 GCGCGACGCGGATCT CCTGCCTTTC TTCC GCAAGGCAGG TCTTGTGCATGTATC Cphamn1_2209 2395860 - 2397500 + | magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase TERM 2462 2397516 - 2397560 + T 82 -10.3 -3.91084 | gap 1, opp_overlap 2397516 2397518 2397519 2397529, overlap 2397519 2397522 2397529 CGGCACAGTAAATAA TA-CCAACAAAAAACCCTCC ATCTCC GGAGGGTTTTTTGTTGTCTG TTTACTTGACGGTAA TERM 2463 2397559 - 2397516 - T 100 -12.6 -4.04806 | opp_overlap 2397516 2397519 2397522 2397529, overlap 2397518 2397519 2397529 CGGCACAGTAAATAA TACCAACAAAAAACCCTCCA TCTC CGGAGGGTTTTTTGTTGTCT GTTTACTTGACGGTA TERM 2464 2397557 - 2397518 - T 100 -17.4 -3.61438 | opp_overlap 2397516 2397519 2397522 2397529, overlap 2397516 2397519 2397529 GCACAGTAAATAATA CCAACAAAAAACCCTCCA TCTC CGGAGGGTTTTTTGTTGT CTGTTTACTTGACGG TERM 2465 2397556 - 2397519 - T 100 -20.9 -2.7614 | opp_overlap 2397516 2397519 2397522 2397529, overlap 2397518 2397516 2397529 CACAGTAAATAATAC CAACAAAAAACCCTCCA TCTC CGGAGGGTTTTTTGTTG TCTGTTTACTTGACG TERM 2466 2397519 - 2397556 + T 100 -20.2 -3.34468 | opp_overlap 2397519 2397518 2397516 2397529, overlap 2397516 2397522 2397529 CACAGTAAATAATAC CAACAAAAAACCCTCC ATCTCC GGAGGGTTTTTTGTTG TCTGTTTACTTGACG TERM 2467 2397522 - 2397553 + T 100 -16.1 -3.80026 | opp_overlap 2397519 2397518 2397516 2397529, overlap 2397519 2397516 2397529 AGTAAATAATACCAA CAAAAAACCCTCC ATCTCC GGAGGGTTTTTTG TTGTCTGTTTACTTG TERM 2468 2397546 - 2397529 - T 100 -9.1 -5.54885 | opp_overlap 2397522 2397519 2397516 2397529, overlap 2397519 2397518 2397516 AATACCAACAAAAAA CCCTCCA TCTC CGGAGGG TTTTTTGTTGTCTGT TERM 2469 2397529 - 2397546 + T 100 -8.4 -5.62045 | opp_overlap 2397529 2397519 2397518 2397516, overlap 2397522 2397519 2397516 AATACCAACAAAAAA CCCTCC ATCTCC GGAGGG TTTTTTGTTGTCTGT Cphamn1_2210 2397981 - 2397562 - | heat shock protein Hsp20 Cphamn1_2211 2399044 - 2398142 - | hypothetical protein TERM 2470 2398325 - 2398346 + g 75 -10.2 -3.44051 | opp_overlap 2398315 GGAAACCGCACCCTG CCGGTATG CCCTTC CATACCGG TTATCATGATCCCGC TERM 2471 2399099 - 2399156 + r 100 -20.8 -3.04248 | opp_overlap 2399090 2399105 2399131, overlap 2399107 2399153 GCACAATGGCTGATA GCCAAATAGCTGAATGGCTGAACGGC GAGATA GCCATCCAGCTATTCAGCTATCTGGC TATTGAGCCCTCTTA TERM 2472 2399150 - 2399105 - R 100 -17.8 -3.70902 | opp_overlap 2399099 2399107, overlap 2399131 TGGCTGATAGCCAAA TAGCTGAATGGCTGAACGGC GAGATA GCCATCCAGCTATTCAGCTA TCTGGCTATTGAGCC Cphamn1_2212 2400795 - 2399524 - | membrane protein Cphamn1_2213 2401125 - 2402498 + | Peptidase M23 TERM 2473 2402518 - 2402540 + F 89 -12 -3.66732 | overlap 2402519 CACGAATAACTTGAC GGGCGGCT AAGGGAC AGCCGCCC TTATTCCCCTCCTTC TERM 2474 2402718 - 2402733 + F 73 -9 -3.53224 | opp_overlap 2402717 2402718 2402726 GCGCCGTGTCACAAC TGACGC AATC GCGTCA TTTCGCAACAACATC TERM 2475 2403475 - 2403463 - g 76 -5.5 -4.80882 | ACGGTATAGCAAAAA GCCGT GCC ACGAC AGGCGGCGTCACTCT Cphamn1_2214 2402934 - 2403569 + | hypothetical protein TERM 2476 2403623 - 2403598 - T 75 -4.5 -4.946 | opp_overlap 2403598 2403595 2403600 ACCAAACACCAAAAA GAGGCTGTCTC AAAA GGGGCTGCCTC TCGTATTTTGAGCAG Cphamn1_2215 2403925 - 2403668 - | hypothetical protein TERM 2477 2403900 - 2403917 + g 90 -8.4 -5.01811 | opp_overlap 2403900, overlap 2403894 GAACCATAGGTGAAA GGCTCC CAAACA GGAGCC TTTTTCATTTAATCA TERM 2478 2403917 - 2403900 - G 73 -9.1 -3.65313 | opp_overlap 2403900 2403894 GAACCATAGGTGAAA GGCTCCC AAAC AGGAGCC TTTTTCATTTAATCA Cphamn1_2216 2404336 - 2403926 - | Class I peptide chain release factor TERM 2479 2404748 - 2404735 - g 76 -4.5 -5.0133 | gap 1, opp_overlap 2404735, overlap 2404736 2404737 2404745 GACTCTCGGAAAAAA GCGCGG AAA CCGC-C ATTGCCGACGCTCTT Cphamn1_2217 2404431 - 2404871 + | protein of unknown function DUF937 Cphamn1_2218 2405949 - 2404996 - | WD-40 repeat protein TERM 2480 2405340 - 2405365 + g 91 -6.9 -5.09426 | overlap 2405342 2405343 CTGAATAGGTATGCC TGTCGCGAGTT TTGT AATTCGCGGTA TTTTTTCCGCTTGCA TERM 2481 2405342 - 2405363 + g 74 -7.3 -4.17355 | overlap 2405340 2405343 GAATAGGTATGCCTG TCGCGAGTT TTGT AATTCGCGG TATTTTTTCCGCTTG Cphamn1_2219 2406337 - 2406170 - | hypothetical protein TERM 2482 2406378 - 2406409 + r 74 -10.1 -3.14132 | opp_overlap 2406377 GATTACCGATTCAAC CGTAGGGGCAACC CCCTGT GGTTGCCCGAACG TTGGTGACAGACAAC Cphamn1_2220 2406866 - 2406471 - | PilT protein domain protein TERM 2483 2406498 - 2406520 + g 70 -9.8 -3.2964 | overlap 2406482 CTGCAGCAGTTCCGA CTGCCGGAGA TTC TCGTCGGCAG TTATCAGCGAAGTTT TERM 2484 2406690 - 2406679 - G 78 -5.8 -4.79657 | AGAAGATCAACAAAA TCCC TATA GGGA ACGCTGATCTCGATC Cphamn1_2221 2407096 - 2406863 - | prevent-host-death family protein Cphamn1_2222 2408428 - 2407274 - | glycosyl transferase family 2 Cphamn1_2223 2409745 - 2408852 - | ATP phosphoribosyltransferase Cphamn1_2224 2410582 - 2409842 - | metallophosphoesterase Cphamn1_2225 2411320 - 2410607 - | phosphatidate cytidylyltransferase Cphamn1_2226 2412358 - 2411348 - | bacteriochlorophyll/chlorophyll synthetase TERM 2485 2412203 - 2412190 - G 84 -2.3 -5.63374 | CGAACATTAAAAAAA TCGCC AGAA GGAGA AAATAATCATGAAGC Cphamn1_2227 2413591 - 2412584 - | UbiA prenyltransferase Cphamn1_2228 2415044 - 2413701 - | RNA modification enzyme, MiaB family TERM 2486 2415492 - 2415504 + H 76 -7.7 -4.16767 | CCACCGCCACCAGCT GACCA ACA TGGTC TTTGTGCTTGTTGTT Cphamn1_2229 2415537 - 2415989 + | hypothetical protein Cphamn1_2230 2415952 - 2416176 + | hypothetical protein Cphamn1_2231 2416825 - 2416214 - | nitrogen-fixing NifU domain protein Cphamn1_2232 2418014 - 2416809 - | aminotransferase class V Cphamn1_2233 2418994 - 2418068 - | cysteine synthase A TERM 2487 2418913 - 2418937 + g 78 -12.9 -3.01712 | overlap 2418915 TGGCGATAATTTCCC CACCGCCTGAA TCG TTCAGGCGCTG TATTGCGACAAGAGG TERM 2488 2419129 - 2419118 - R 71 -4.4 -4.59954 | AACAAGAAAAAAACA TCTG GTCA CAGA GAGGGAATGATCGTA Cphamn1_2234 2420114 - 2419209 - | transcriptional regulator, XRE family TERM 2489 2421176 - 2421152 - g 71 -7.1 -4.24948 | overlap 2421153 TGATGACACCGAAAA GCGAGATCGAG TGG CTCGACCTCAA TGCGCCGGATGACTC TERM 2490 2421175 - 2421153 - g 71 -10.6 -3.14487 | overlap 2421152 GATGACACCGAAAAG CGAGATCGAG TGG CTCGACCTCA ATGCGCCGGATGACT Cphamn1_2235 2420482 - 2421801 + | protein of unknown function DUF21 TERM 2491 2422359 - 2422374 + G 70 -3.2 -4.82901 | TGAAGAAAACGCACA GATCGA ATCA TCGTTC TTTTTCTCAACAGAA Cphamn1_2236 2421988 - 2422413 + | Nucleoside-diphosphate kinase TERM 2492 2422436 - 2422480 + T 77 -10.1 -3.53012 | gap 1 CGGATAGCACATACT CGTCATGCCCCG-TAAACTA TCTTTC TGGTTTCTCGGGGCTTGACG TTTCAGCCACCCAGC Cphamn1_2237 2423592 - 2422669 - | Serine-type D-Ala-D-Ala carboxypeptidase Cphamn1_2238 2424859 - 2423720 - | protein of unknown function UPF0118 Cphamn1_2239 2425602 - 2424856 - | protein of unknown function DUF558 TERM 2493 2425346 - 2425325 - G 100 -5.9 -5.7946 | TTTTCAAGAAAAAAA TCAAACCGC TGTG ACGATTTGA GAAGCGATAGTGCCA Cphamn1_2240 2426324 - 2425632 - | phosphoribosyltransferase TERM 2494 2426383 - 2426369 - R 70 -2.8 -4.94147 | overlap 2426374 AAGAAGAGAAGAAAA GCAG AGCGCGG CTGC ACCATAGACTCCAGC Cphamn1_2241 2427343 - 2426351 - | ROK family protein TERM 2495 2426504 - 2426491 - G 78 -2.3 -5.31877 | ATGCAGGAGAAAAAA TGAGG TTAC CCGCA CCTGAAATCCCGCCG Cphamn1_2242 2428180 - 2427383 - | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase TERM 2496 2427640 - 2427620 - G 74 -9.7 -3.54879 | overlap 2427618 CTCAAAACGGAAAGA GTCATGCCC CCC GGCCATGAC ATAGGGAGGAACATC Cphamn1_2243 2430822 - 2428195 - | hypothetical protein TERM 2497 2429076 - 2429096 + g 70 -2.5 -5.05782 | overlap 2429079 TCTCCCTGAGTTCCT TATCGCTCA GAC TGAACGCTA TTTTTTCCGCTCCGT TERM 2498 2429101 - 2429122 + g 70 -4.3 -4.63527 | overlap 2429103 ACTGAACGCTATTTT TTCCGCTCC GTTC GGAGAGGTA TTTTTCAGCTGGTCG Cphamn1_2244 2432187 - 2431033 - | oxygen-independent coproporphyrinogen III oxidase Cphamn1_2245 2432812 - 2432225 - | hydrolase, HAD-superfamily, subfamily IIIA Cphamn1_2246 2434441 - 2432966 - | glycogen/starch synthase, ADP-glucose type TERM 2499 2433011 - 2433033 + g 71 -7.7 -4.01703 | CTGATTGTATTTTTT GGCTGACTT CTTCC ATGTCAGCC TTCTTTCCATATTCT TERM 2500 2433734 - 2433721 - G 70 -8.1 -3.72893 | CAGCTCCGCAGGAAA CAGCG GAGT CGCTG CTGATAAGCCCGGCA TERM 2501 2435624 - 2435614 - g 76 -6.8 -4.56775 | opp_overlap 2435614 2435608 ACTGCTGCCGAAAAA CGGT GAA ACCG CCGCGTTTCTTGTTC Cphamn1_2247 2434562 - 2436274 + | hypothetical protein Cphamn1_2248 2436360 - 2436932 + | bacteriochlorophyll 4-vinyl reductase TERM 2502 2438170 - 2438156 - g 83 -2.8 -5.40072 | CGCTCGTCAAAAAAA CAGG TTTTACC CCTG CAACAATCAATAGGG Cphamn1_2249 2437141 - 2438310 + | filamentation induced by cAMP protein Fic Cphamn1_2250 2438616 - 2438344 - | TfoX domain protein Cphamn1_2251 2438918 - 2438613 - | putative mitomycin resistance protein Cphamn1_2253 2439807 - 2439526 - | prevent-host-death family protein Cphamn1_2254 2440573 - 2439872 - | haloacid dehalogenase, type II TERM 2503 2440596 - 2440647 + r 75 -9.6 -3.42407 | opp_overlap 2440610, overlap 2440598 2440610 CCCTCCTTGTTCGTT TACTCTCACCTAAACTGAGCATTT GTTG AAACGCTCAGTTTAGGTCTCAGTG TTCGTTAATACTATC TERM 2504 2440598 - 2440645 + r 76 -10 -3.27743 | opp_overlap 2440610, overlap 2440596 2440610 CTCCTTGTTCGTTTA CTCTCACCTAAACTGAGCATTT GTTG AAACGCTCAGTTTAGGTCTCAG TGTTCGTTAATACTA TERM 2505 2440633 - 2440610 - R 78 -10.4 -3.65351 | opp_overlap 2440598 2440596 2440610 TTACTCTCACCTAAA CTGAGCATTT GTTG AAACGCTCAG TTTAGGTCTCAGTGT TERM 2506 2440610 - 2440633 + r 71 -8.2 -3.72141 | opp_overlap 2440610, overlap 2440598 2440596 TTACTCTCACCTAAA CTGAGCATTT GTTG AAACGCTCAG TTTAGGTCTCAGTGT TERM 2507 2440736 - 2440715 - R 80 -6.5 -4.85782 | overlap 2440717 TGCCTGAAAAACAAA CAGGCAGCC CGAA AGCTGCCTT GACATGAAACCGTAT TERM 2508 2440734 - 2440717 - R 80 -9.1 -4.04587 | overlap 2440715 CCTGAAAAACAAACA GGCAGCC CGAA AGCTGCC TTGACATGAAACCGT Cphamn1_2255 2440886 - 2440791 - | hypothetical protein Cphamn1_2256 2441346 - 2441005 - | hypothetical protein Cphamn1_2257 2441699 - 2441346 - | hypothetical protein TERM 2509 2441669 - 2441652 - G 100 -9.1 -5.626 | opp_overlap 2441652 GATTTCACAAAAAAA GGCAGCC CGAA AGCTGCC TTGAATACCGATAAC Cphamn1_2258 2442583 - 2441756 - | light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein TERM 2510 2442184 - 2442168 - G 71 -7.3 -4.10657 | GCATAGTCCGCAAAA TTCAACG GGG CGCTGAA TCCACCGCACACGAC Cphamn1_2259 2444223 - 2442625 - | light-independent protochlorophyllide reductase, B subunit TERM 2511 2444064 - 2444076 + g 70 -9.1 -3.54755 | opp_overlap 2444062, overlap 2444062 CGCTGATGGAAAGTG CCGGA AAC TCCGG TGTTCTTTCCAGCAT Cphamn1_2260 2445534 - 2444272 - | light-independent protochlorophyllide reductase, N subunit Cphamn1_2261 2446025 - 2445666 - | protein of unknown function DUF77 TERM 2512 2445832 - 2445818 - G 76 -6.4 -4.62069 | overlap 2445798 CTGCTATGGCAAAAA GCTCAG TCG CTGAAC CGCACACGGTTGTAC Cphamn1_2262 2447295 - 2446006 - | Adenylosuccinate synthase TERM 2513 2447117 - 2447106 - G 73 -5.8 -4.56775 | overlap 2447108 AGCCTTCGTGAAAAA TCCC CGAA GGGA TCAGGTGAAGAACGA Cphamn1_2263 2447905 - 2447327 - | GTP-binding protein HSR1-related TERM 2514 2448368 - 2448350 - g 79 -5.2 -5.0133 | overlap 2448351 CACGTCTGGAAAAAA CCGATCCC ATG GAGATCGC CCAGTACTATACCCG TERM 2515 2448367 - 2448351 - g 70 -8.7 -3.60316 | overlap 2448350 ACGTCTGGAAAAAAC CGATCCC ATG GAGATCG CCCAGTACTATACCC TERM 2516 2448917 - 2448905 - g 76 -3.3 -5.13741 | overlap 2448906 TTAATGGAACAAAAA TGGGA AAA TCCCT GAAAAACTCCGTGAA Cphamn1_2264 2448070 - 2449524 + | cysteinyl-tRNA synthetase Cphamn1_2265 2449643 - 2449512 - | hypothetical protein TERM 2517 2449600 - 2449620 + g 70 -11.2 -2.56914 | overlap 2449597 TTTTTTCCCCAGTCA TTCCCGTG CCTGA CACGGGAA TCCATTCCTGCCCTC Cphamn1_2266 2450854 - 2449739 - | Mannose-1-phosphate guanylyltransferase (GDP) TERM 2518 2449869 - 2449879 + g 74 -2.4 -5.08011 | TTTTCAAGTCCGACA ACGG CCA CCGC TTTTTTCCCGGTTTT Cphamn1_2267 2451006 - 2451665 + | methyltransferase GidB TERM 2519 2451696 - 2451720 + T 100 -15.8 -4.65895 | opp_overlap 2451696 TACAATGCAAAAAAA GCACAGCAGG TATAT CCTGCTGTGC TTTTTCAATCAAGAA TERM 2520 2451720 - 2451696 - T 100 -15.8 -5.55698 | opp_overlap 2451696 TACAATGCAAAAAAA GCACAGCAGG TATAT CCTGCTGTGC TTTTTCAATCAAGAA Cphamn1_2268 2452265 - 2451765 - | ribosomal protein L17 TERM 2521 2451822 - 2451838 + g 91 -5.1 -5.47218 | TGAAACCTCAGCCTT CTCAGAA CCT TCCTGAG TTTTTTTGGATCCGC Cphamn1_2269 2453297 - 2452311 - | DNA-directed RNA polymerase, alpha subunit Cphamn1_2270 2453939 - 2453328 - | ribosomal protein S4 TERM 2522 2453701 - 2453715 + g 76 -4.2 -4.94902 | overlap 2453702 TCACCTGTAATGCCA CGCTGT GAA ACAGCC TTTTTGTAGTAATTC Cphamn1_2271 2454366 - 2453983 - | ribosomal protein S11 Cphamn1_2272 2454792 - 2454415 - | ribosomal protein S13 TERM 2523 2454442 - 2454462 + g 70 -3.1 -4.84492 | CGCTTTCTTCTTACC GGCAACCGT CTT GCGTCTGCC TTTTCTTGTCCTTGC Cphamn1_2273 2454948 - 2454832 - | ribosomal protein L36 TERM 2524 2454911 - 2454921 + g 76 -3.2 -5.1675 | overlap 2454907 CTGATAATCCGGCAG TGCT CAC AGCG TTTTTTAATAGATGA Cphamn1_2274 2455274 - 2455056 - | translation initiation factor IF-1 Cphamn1_2275 2456099 - 2455323 - | methionine aminopeptidase, type I TERM 2525 2455658 - 2455646 - G 73 -10.5 -3.32294 | opp_overlap 2455656, overlap 2455639 AAGAAATATCATGAA GCCGG TTT CCGGC GACTGCATGAGCAAT Cphamn1_2276 2457442 - 2456117 - | preprotein translocase, SecY subunit TERM 2526 2456391 - 2456367 - G 76 -6.4 -4.74215 | gap 1 ATATTATCAATAAAA TCAG-CCGTGC TTTT GCCCGGTCTGA CTCCGGGAATAAATC TERM 2527 2457395 - 2457367 - G 82 -11 -3.75911 | opp_overlap 2457366, overlap 2457365 2457362 TGTAAATAAACAAGA GCAGCAGCGTAT ACAAA ATCCGCTGCCGC AATTCTGGTATCTTA Cphamn1_2277 2458009 - 2457461 - | ribosomal protein L15 TERM 2528 2457804 - 2457823 + g 76 -8 -4.14874 | opp_overlap 2457819 ATAACATTCTTCCTG TTTGGTTT TGTA AAACCAAA TTTTGGAAGTCTTCT Cphamn1_2278 2458229 - 2458044 - | ribosomal protein L30 Cphamn1_2279 2458765 - 2458247 - | ribosomal protein S5 Cphamn1_2280 2459146 - 2458787 - | ribosomal protein L18P/L5E Cphamn1_2281 2459740 - 2459201 - | ribosomal protein L6 TERM 2529 2459705 - 2459721 + g 76 -4.4 -4.93316 | AATCTTCGCCTGCTC TGCCAG CTTGA TTGGCA TTTTTCCTATTCTTG Cphamn1_2282 2460164 - 2459769 - | ribosomal protein S8 TERM 2530 2460078 - 2460094 + g 76 -5.1 -4.79174 | opp_overlap 2460081, overlap 2460079 CTCTTTCAGCCTGGA ATACGGA ATA TCCGTAG TTTTGTTACTTGCGT Cphamn1_2283 2460495 - 2460226 - | ribosomal protein S14 Cphamn1_2284 2461103 - 2460513 - | ribosomal protein L5 Cphamn1_2285 2461405 - 2461163 - | ribosomal protein L24 TERM 2531 2461307 - 2461320 + g 74 -6.7 -4.40173 | CTGGGGAAAAACTCT CAGGA CCTT TCCTG TTTTCCCTTTGTCAT TERM 2532 2461351 - 2461364 + g 71 -6.7 -4.20516 | opp_overlap 2461351 TGCCTGCTATTACAA GAACG GTGT CGTTC TTTCTTACATGCAGC Cphamn1_2286 2461896 - 2461528 - | ribosomal protein L14 Cphamn1_2287 2462208 - 2461939 - | ribosomal protein S17 TERM 2533 2462251 - 2462284 + r 89 -11.7 -3.57144 | overlap 2462249 2462259 CTCTGTATACCCTCT TGCAGGACGCCTCAG GCTT CTGTGGCTTTCTGCA TTTCAAGCTGACGCA TERM 2534 2462259 - 2462276 + r 70 -6.9 -4.02132 | overlap 2462249 2462251 ACCCTCTTGCAGGAC GCCTCAG GCTT CTGTGGC TTTCTGCATTTCAAG Cphamn1_2288 2462468 - 2462262 - | ribosomal protein L29 Cphamn1_2289 2462914 - 2462495 - | ribosomal protein L16 Cphamn1_2290 2463724 - 2462966 - | ribosomal protein S3 Cphamn1_2291 2464099 - 2463746 - | ribosomal protein L22 Cphamn1_2292 2464425 - 2464129 - | ribosomal protein S19 Cphamn1_2293 2465300 - 2464461 - | ribosomal protein L2 Cphamn1_2294 2465643 - 2465314 - | Ribosomal protein L25/L23 TERM 2535 2465446 - 2465456 + g 76 -3.2 -5.0925 | AATGAGCCCTTTACG GGTA TAC TGCC TTTTTGATTTTCCCA Cphamn1_2295 2466301 - 2465675 - | ribosomal protein L4/L1e Cphamn1_2296 2466949 - 2466320 - | ribosomal protein L3 TERM 2536 2466868 - 2466855 - G 72 -3.8 -4.87133 | ACCTGCGAAACAAAA CAGG GCCCGG CCTG GATGACCGTACATGG Cphamn1_2297 2467282 - 2466974 - | ribosomal protein S10 TERM 2537 2467343 - 2467319 - R 100 -8.6 -5.55769 | gap 1 GTTTAGAATAAAAAA GAGGCGAG-CA ACCA TGTCTCGCCCC CATTGCGAACAGTAT Cphamn1_2298 2468547 - 2467366 - | translation elongation factor Tu TERM 2538 2467943 - 2467921 - G 72 -4.1 -4.76644 | gap 1 AACAGGCATCAAAAA CGGTTTGTCG ACGT CG-CGAACCG GCTCAGGAATATAGT Cphamn1_2299 2470739 - 2468625 - | translation elongation factor G TERM 2539 2469752 - 2469739 - G 76 -4.5 -5.04385 | TAGACCCGGAAAAAA GTCAG CTTA CCGAC AAACGGATCAGTAGC Cphamn1_2300 2471236 - 2470769 - | ribosomal protein S7 Cphamn1_2301 2471649 - 2471263 - | ribosomal protein S12 Cphamn1_2302 2473012 - 2471813 - | hypothetical protein Cphamn1_2303 2475416 - 2473056 - | hypothetical protein TERM 2540 2473981 - 2473999 + g 70 -4.4 -4.67982 | opp_overlap 2473983 2473985 2473986, overlap 2473983 GAAACCAGCAATGCA AACAGGGC TCC GCCCAGTA TTTTCTTCGATCGGA TERM 2541 2474384 - 2474370 - G 71 -5.6 -4.56629 | overlap 2474372 GACAACATGATAAAA CAGGTC GTA GACCGG GCTGAAGAACTTACC TERM 2542 2475130 - 2475112 - G 71 -7.4 -4.00532 | CCGGCAAACACGAAA TGAAGCAG TTG CAGCTTCA AGCCGTCGAGAGCAA TERM 2543 2475369 - 2475353 - G 73 -2.9 -5.02074 | overlap 2475342 2475354 CCACCGGGTAAAAAA GCCCC GCGACAA GGAGC AGATATCCGGCGAGG Cphamn1_2304 2476908 - 2475424 - | polysaccharide biosynthesis protein TERM 2544 2476573 - 2476557 - G 77 -12.3 -3.04792 | GCATCAGGCGTAACA GGTTGCC ACC GGCAACC AGAGAGCTGAGAAAG Cphamn1_2305 2477780 - 2476905 - | glycosyl transferase family 2 Cphamn1_2306 2478916 - 2477777 - | glycosyl transferase group 1 TERM 2545 2478118 - 2478097 - G 91 -2.9 -5.80248 | gap 1 CAACAGAGAAAAAAA GCCGCATCCG TTC CGGAGG-GAC AAACCCTGGATACAC Cphamn1_2307 2479261 - 2478995 - | Phosphotransferase system, phosphocarrier protein HPr Cphamn1_2308 2479889 - 2479392 - | GCN5-related N-acetyltransferase TERM 2546 2479498 - 2479508 + g 73 -3.2 -5.0538 | overlap 2479488 CTCCAGATTTTCTGA GGGA ACA TCTC TTTTTTCACCTCGCG TERM 2547 2479958 - 2479924 - R 87 -10.1 -4.4078 | gap 1 CGGCTGTAATGAAAA CCTG-ACTGAGCGCTT CAAC ACACGCTCAGTTCAGG AAAAAAATGTAAACA Cphamn1_2309 2480968 - 2479988 - | GTP-binding protein Obg/CgtA TERM 2548 2480356 - 2480346 - G 70 -3.2 -4.77165 | TCCGCCATAACAAAA GAGC TGT ACTC CCTGTATTGAACAAT Cphamn1_2310 2482635 - 2481406 - | Rhodopirellula transposase family protein TERM 2549 2482608 - 2482651 + g 76 -8.3 -4.23652 | overlap 2482602 ATTTGATGCGGATCA GCGTTATTTCGTCATCATG TGTCTT CATGATGACAATATAACAC TTTCCTTTATTCGTT Cphamn1_2311 2482885 - 2483133 + | Exonuclease VII small subunit Cphamn1_2312 2484575 - 2483148 - | glutamyl-tRNA(Gln) amidotransferase, B subunit TERM 2550 2483550 - 2483586 + g 79 -9.4 -4.12456 | gap 1 ACCCATCACCCAGTT GGATG-CCGCCTTTGCG TCAC CGCAAGCGCGGACAACC TTTTCGAAATAGTCT TERM 2551 2483813 - 2483839 + g 82 -14.4 -2.78816 | GCATCGATCGGGTCT CCTGCCTGTCGG CAT CCCACAGGCGGG TCTCCTGAAAAATCG TERM 2552 2484283 - 2484263 - G 74 -4.7 -4.87665 | overlap 2484267 CCGTATCGACAAAAA CCATCCCTT CGG AACAGATGG GCTCTTCGAACTGGG Cphamn1_2313 2485417 - 2484785 - | hypothetical protein TERM 2553 2485049 - 2485035 - G 70 -4.2 -4.60255 | ATAATTTCCGAAAAA GCCTGA CCG CCAAGC TGTGGCCCGACGTTG TERM 2554 2485213 - 2485202 - G 70 -2.2 -5.00884 | AGCCTCGTCAAAAAA GATC TGCA GACC GGGATCAGTTTTCTG Cphamn1_2314 2486830 - 2485511 - | AAA ATPase central domain protein Cphamn1_2315 2486888 - 2488528 + | ferredoxin-dependent glutamate synthase Cphamn1_2316 2488834 - 2488538 - | hypothetical protein Cphamn1_2317 2489477 - 2489382 - | hypothetical protein Cphamn1_2318 2490550 - 2489531 - | von Willebrand factor type A TERM 2555 2490660 - 2490672 + r 85 -7.7 -4.614 | opp_overlap 2490659, overlap 2490656 AAAGCGCACAAGGAC GGGAA ACG TTCCC TTTTCTGTCATTCCC Cphamn1_2319 2491959 - 2490964 - | von Willebrand factor type A TERM 2556 2491560 - 2491542 - G 77 -11 -3.38812 | opp_overlap 2491545, overlap 2491545 TCCCCCTGAACAAGA CAAGACCG AAC CGGTCCTG CGGTCTTTCCCGGAT TERM 2557 2491557 - 2491545 - G 75 -9.1 -3.83318 | opp_overlap 2491545, overlap 2491542 CCCTGAACAAGACAA GACCG AAC CGGTC CTGCGGTCTTTCCCG Cphamn1_2320 2493745 - 2493218 - | hypothetical protein Cphamn1_2321 2494020 - 2493742 - | Protein of unknown function DUF1778 TERM 2558 2494242 - 2494221 - R 74 -9.5 -3.29144 | gap 1 TCAGGGGCCGGAGAA CTTGCAGCCG GAA CGG-TGCAAG CGCCCCACGAACCTT Cphamn1_2323 2495216 - 2494557 - | hypothetical protein TERM 2559 2494787 - 2494772 - G 73 -3.2 -5.0133 | GATCTTCGGAAAAAA CCAGAT AAAA ATCAGG ATCAGTATTTGAGGA Cphamn1_2324 2495328 - 2496374 + | transposase IS4 family protein TERM 2560 2498147 - 2498133 - T 75 -8.6 -3.73072 | opp_overlap 2498133 AAGCTGGTCATGAAA GTCAAC AAG GTTGAC TATGTTCGCCTGAAG TERM 2561 2498385 - 2498363 - T 74 -6.9 -4.30559 | overlap 2498383 AACAAAACGTTAAAA CGGTAGCCC TATAG GGACAACCG GGATTTTTTCACCGG Cphamn1_2326 2498864 - 2498421 - | hypothetical protein TERM 2562 2499223 - 2499195 - R 71 -8.2 -3.85817 | gap 1, opp_overlap 2499194 2499220 AGCGGTCTGGACAAA CTGGTAAC-CACC AAAG GGTGCGTAACCAG ATACTTGGTTTATAT Cphamn1_2328 2499616 - 2499359 - | protein of unknown function nitrogen fixation Cphamn1_2329 2500612 - 2499617 - | hypothetical protein Cphamn1_2330 2502856 - 2500631 - | ABC transporter-related protein TERM 2563 2502327 - 2502337 + g 72 -8.2 -3.85698 | GAGAGGACCTCTTTT CCGC CGA GCGG TTTATCGGGAAACGG Cphamn1_2331 2505033 - 2502859 - | ABC transporter-related protein TERM 2564 2503651 - 2503677 + g 72 -8.6 -3.85817 | CACGTCGTCAAGCCG CTGCATGTTGCC CTC GGCGTCCTGCAG TTTCTGGCCGAGGGT Cphamn1_2332 2505365 - 2505030 - | outer membrane protein-like protein TERM 2565 2505626 - 2505651 + r 73 -6.1 -4.371 | overlap 2505615 2505628 GACCCCTCTTGTTTC GCTGGAGGTGT ATAC ACAACTCCACC TTTTGATATAATCGC TERM 2566 2505852 - 2505829 - R 74 -9.8 -3.41051 | opp_overlap 2505829, overlap 2505833 GTATTGCGACTATAA TGAATCAAAT TATT ATTTGATTCA TTTTCTTTCTTTTGA TERM 2567 2505829 - 2505852 + r 100 -9.8 -5.26247 | opp_overlap 2505829 2505833 GTATTGCGACTATAA TGAATCAAAT TATT ATTTGATTCA TTTTCTTTCTTTTGA Cphamn1_2333 2507332 - 2506358 - | protein of unknown function DUF1568 TERM 2568 2506763 - 2506774 + g 74 -7.2 -4.16921 | opp_overlap 2506762 ACCCCCGACAAGACC GGGC TGTC GCCC TTTTCCGGCTTCTTC Cphamn1_2334 2507847 - 2507563 - | CRISPR-associated protein Cas2 TERM 2569 2507688 - 2507698 + g 80 -3.2 -5.35459 | GATTCGGGTCCATCT GCTT TTT GAGC TTTTTTCTCATCTCT TERM 2570 2508150 - 2508139 - g 76 -5.8 -4.59984 | AAAAGCGATACAAAA CAGC ATGG GCTG GCCGAAGCTTGAAGT Cphamn1_2335 2507888 - 2508463 + | hypothetical protein Cphamn1_2336 2509559 - 2508585 - | protein of unknown function DUF1568 TERM 2571 2508990 - 2509001 + g 74 -7.2 -4.16921 | opp_overlap 2508989 ACCCCCGACAAGACC GGGC TGTC GCCC TTTTCCGGCTTCTTC TERM 2572 2509392 - 2509373 - G 75 -10.8 -3.40403 | CGCTTTTGAGGAGAA GATGGACA TGAT TGTCCATC AGCGCCCACGCATAC Cphamn1_2337 2510113 - 2510664 + | hypothetical protein Cphamn1_2338 2510661 - 2510891 + | hypothetical protein Cphamn1_2339 2511569 - 2511144 - | PilT protein domain protein TERM 2573 2511495 - 2511470 - G 91 -9.1 -4.8543 | gap 1 GAACGCTCAGAAAAA GATCGAA-CTCG TTT CGAGCCTCGATC CACCGTACTACACCC Cphamn1_2340 2511814 - 2511566 - | prevent-host-death family protein Cphamn1_2341 2512240 - 2512473 + | hypothetical protein Cphamn1_2342 2513528 - 2512548 - | hypothetical protein TERM 2574 2512874 - 2512890 + g 100 -3 -5.86061 | gap 1, opp_overlap 2512869, overlap 2512875 2512876 TGAAATCAATCGGCT TA-CGCG AAGG CGCGATA TTTTTTTTCATCAGC Cphamn1_2343 2514408 - 2513530 - | von Willebrand factor type A TERM 2575 2513796 - 2513809 + g 70 -8.1 -3.77666 | opp_overlap 2513796 CGTCAAGATGTATAA GCACG AAGT CGTGC TTTGCGTTGAGTATC Cphamn1_2344 2515883 - 2514885 - | ATPase associated with various cellular activities AAA_3 TERM 2576 2515292 - 2515271 - G 73 -5.2 -4.62302 | gap 1, opp_overlap 2515281 GAACATCCTGAAAAA CAGCGGTTC TTGCC GAAC-GCTG CATAATTTCAAGTTC Cphamn1_2345 2516220 - 2515975 - | hypothetical protein Cphamn1_2346 2516241 - 2517284 + | metalloendopeptidase, glycoprotease family Cphamn1_2347 2517334 - 2517903 + | peptidyl-prolyl cis-trans isomerase cyclophilin type Cphamn1_2348 2518094 - 2518450 + | preprotein translocase, YajC subunit Cphamn1_2349 2518460 - 2519560 + | carbamoyl-phosphate synthase, small subunit Cphamn1_2350 2519567 - 2520220 + | hypothetical protein Cphamn1_2351 2520224 - 2521636 + | Radical SAM domain protein TERM 2577 2521803 - 2521819 + G 76 -4.3 -4.99645 | overlap 2521804 AAAAATTCTATCAGC AGCTGCA ATT TGCGGCC TTTTCTTTATCGGAT Cphamn1_2352 2521783 - 2522169 + | cytochrome c class I TERM 2578 2522204 - 2522188 - g 74 -7.9 -4.1899 | overlap 2522200 2522203 TTATCTGAGGCAAAA GCTGCAG TAA CAGCAGC CGACGTTGCGAAACA Cphamn1_2353 2522170 - 2522475 + | cytochrome c class I TERM 2579 2522504 - 2522529 + T 100 -9 -5.4833 | TTCCATAGCAGTTAT GCGGACCG TCTTGAAACC CGGTCCGC TTTTTTATTCCCTCC Cphamn1_2354 2523436 - 2522534 - | Bile acid:sodium symporter TERM 2580 2523553 - 2523563 + H 80 -5.4 -5.06585 | GGGGGTACAAGGGCG GGAA ACT TTCC TTTTTCTGTCATTTC Cphamn1_2355 2523584 - 2523790 + | hypothetical protein Cphamn1_2356 2523853 - 2524107 + | hypothetical protein TERM 2581 2524496 - 2524479 - g 74 -11.3 -3.04144 | GGGTCATGCCGAACA CTCCTGC ATTT GCAGGAG AGGGCATGACGGCTG Cphamn1_2357 2524121 - 2524921 + | pyrroline-5-carboxylate reductase Cphamn1_2358 2524929 - 2526245 + | hypothetical protein Cphamn1_2359 2526660 - 2526268 - | molybdopterin biosynthesis MoaE protein TERM 2582 2526413 - 2526381 - G 79 -11.9 -3.32844 | GTTTTGACCGGACAA GCACCACGATGGCGG CTT CCCCCACCGGGATGC TCCCAACCCGATGGA Cphamn1_2360 2526920 - 2526663 - | thiamineS protein Cphamn1_2361 2528139 - 2526907 - | molybdenum cofactor synthesis domain protein Cphamn1_2362 2529080 - 2528139 - | molybdenum cofactor biosynthesis protein C TERM 2583 2529411 - 2529421 + r 71 -4.6 -4.60889 | overlap 2529420 AAGCAAAAAAGGAGT TCGG CTT CCGG TTTTTCAGCCTGATT Cphamn1_2363 2530822 - 2529554 - | hypothetical protein TERM 2584 2531448 - 2531465 + G 91 -9.1 -4.87133 | opp_overlap 2531450 AATTTATCCGGACAT CAGCCGC TAGC GCGGTTG TTTTATTTGCCGGGT Cphamn1_2364 2531411 - 2531908 + | arsenite oxidase, small subunit TERM 2585 2532190 - 2532148 - g 82 -13 -3.38291 | opp_overlap 2532155 2532158, overlap 2532149 2532151 2532158 TGCATAATGTCATAA CCAGGAATAATGGCAAAA AATACCA TCTTGCCATTATTCCTGC GAAGGAATCACGGAT TERM 2586 2532189 - 2532149 - g 91 -16.5 -2.62653 | opp_overlap 2532155 2532158, overlap 2532148 2532151 2532158 GCATAATGTCATAAC CAGGAATAATGGCAAAA AATACCA TCTTGCCATTATTCCTG CGAAGGAATCACGGA TERM 2587 2532187 - 2532151 - g 79 -13.3 -2.85061 | opp_overlap 2532155 2532158, overlap 2532149 2532148 2532158 ATAATGTCATAACCA GGAATAATGGCAAAA AATACCA TCTTGCCATTATTCC TGCGAAGGAATCACG TERM 2588 2533723 - 2533712 - g 70 -4.4 -4.72486 | opp_overlap 2533703, overlap 2533703 CATAAAGCTTAAAAA GCTT TATG AAGC TGAAGGAAATACCGA TERM 2589 2534291 - 2534304 + G 74 -6.7 -4.31043 | TGTCAACGATTCACC CAAGC CCGG GCTTG TTTTCGGTATTATGT Cphamn1_2365 2531922 - 2534483 + | arsenite oxidase, large subunit TERM 2590 2534510 - 2534547 + F 82 -10 -4.07687 | gap 1, opp_overlap 2534504, overlap 2534511 GTTCACAAACTATTT TCATCAGGCCAT-CCCA TTCCT TGGATATGGCCTGATGG TTTTAGCCAACAACT TERM 2591 2534511 - 2534546 + F 79 -11.3 -3.04398 | gap 1, opp_overlap 2534504, overlap 2534510 TTCACAAACTATTTT CATCAGGCCAT-CCCA TTCCT TGGATATGGCCTGATG GTTTTAGCCAACAAC TERM 2592 2534889 - 2534876 - g 70 -2.3 -4.91109 | opp_overlap 2534879 2534888 TGGGGATCAGAAAAA TCCGG TTCA CAGGA GGAGAACCTCTGTTG TERM 2593 2535363 - 2535375 + G 78 -6.3 -4.78752 | ATCCGAGGTTTCAGG TTCTG CAA CAGAA TTTTTCAGTTATCGT Cphamn1_2366 2534662 - 2535660 + | molybdenum cofactor biosynthesis protein A Cphamn1_2367 2536135 - 2535665 - | MOSC domain containing protein TERM 2594 2536302 - 2536324 + r 88 -12 -3.5393 | ATTGGACCATCCGGT GCAGCTGCAG ATC CTGAAGCTGC TTTCAACACAATCAT Cphamn1_2370 2538179 - 2537010 - | transposase IS4 family protein TERM 2595 2538279 - 2538290 + r 77 -4.4 -5.04249 | opp_overlap 2538279, overlap 2538270 TTATTTTTTTATAAT CTCT TATA AGAG TTTATTTTTTCAACA Cphamn1_2371 2539880 - 2538345 - | transposase IS4 family protein TERM 2596 2538481 - 2538505 + g 74 -4.1 -4.9725 | TGCCAGAGTTTTTTC CGGATCTGTCG TAA CGAGCGACCCG TTTTTATCTCGAGGT Cphamn1_2372 2540110 - 2539949 - | hypothetical protein TERM 2597 2540209 - 2540220 + r 77 -4.4 -5.04249 | opp_overlap 2540209, overlap 2540200 TTATTTTTTTATAAT CTCT TATA AGAG TTTATTTTTTCAACA Cphamn1_2374 2542159 - 2541326 - | glycerophosphoryl diester phosphodiesterase TERM 2598 2542183 - 2542167 - R 100 -6.5 -5.76633 | TCACACATAAAAAAA GGGGC TCCGCAG GCCCC TGAAACAGTATTTTC Cphamn1_2375 2542725 - 2542210 - | hypothetical protein Cphamn1_2376 2543159 - 2542863 - | hypothetical protein Cphamn1_2377 2543431 - 2543613 + | Ric1 protein TERM 2599 2544184 - 2544164 - g 82 -10.5 -3.85698 | opp_overlap 2544163 GTTGTTGTTGACAAA GAGCTCAAA ATA CTTGAGCTC ATCCGTTCAGAAGCC Cphamn1_2378 2543777 - 2544943 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 2600 2545391 - 2545374 - g 73 -5.5 -4.60487 | opp_overlap 2545373 2545374 2545376, overlap 2545377 GAGCAGGCTGAAAAA GAACAGG TTGA CCTGATC ATTCTCGGTTCACAC TERM 2601 2545388 - 2545377 - g 71 -5.8 -4.41633 | opp_overlap 2545376 2545374 2545373, overlap 2545374 CAGGCTGAAAAAGAA CAGG TTGA CCTG ATCATTCTCGGTTCA Cphamn1_2379 2545023 - 2545514 + | UspA domain protein TERM 2602 2545521 - 2545509 - T 76 -4.1 -5.13521 | overlap 2545515 2545517 2545519 AAAGCACTGAAAAAA CAGTA ACA TACCG GCAACCACCGGTCGG Cphamn1_2380 2546814 - 2545585 - | NADH:ubiquinone oxidoreductase, subunit F TERM 2603 2545885 - 2545907 + g 71 -6.2 -4.42667 | opp_overlap 2545891 CGAACGCGCTCCATA CCAGAAGGAA ACT TTCCTGCGGG TTTTCATGGTTTTGA TERM 2604 2546024 - 2546011 - G 78 -2.3 -5.24129 | overlap 2546012 CTCTTTTATAAAAAA CTCCC CGTA GGGAC CTGAAATACGTACCT Cphamn1_2381 2547621 - 2546995 - | NADH:ubiquinone oxidoreductase, subunit E Cphamn1_2382 2548250 - 2547621 - | NADH:ubiquinone oxidoreductase, subunit D Cphamn1_2383 2548897 - 2548271 - | NADH:ubiquinone oxidoreductase, subunit C TERM 2605 2548795 - 2548811 + g 82 -7.9 -4.65933 | GCGCCTTGTTGAACT CCTGCCG CTC CTGCAGG TTTATTTTCAACATC Cphamn1_2384 2550038 - 2548884 - | NADH:ubiquinone oxidoreductase, subunit B TERM 2606 2549795 - 2549785 - G 70 -8.2 -3.73402 | ATATTCTGCAGGAAA CCCG CCT CGGG AGAGGCCTGATAGCC TERM 2607 2549872 - 2549846 - G 73 -10.2 -3.2964 | opp_overlap 2549845 AAAGGGCCGGCAGAA GCGCGATGATCA CGG TAATCATCGAGC GCTTCATATCGACAG Cphamn1_2385 2551432 - 2550077 - | NADH:ubiquinone oxidoreductase, subunit A TERM 2608 2552019 - 2552009 - H 77 -2.4 -5.46706 | ACCGGAAAACAAAAA CCAG AAT CAGG AAACCATGAACATGA TERM 2609 2553372 - 2553358 - g 74 -4.2 -4.82901 | overlap 2553359 CCTTCGGCAGAAAAA CCGCTC TCG AAGCGA TCGACAAGCTGGACT TERM 2610 2553698 - 2553688 - g 82 -6.8 -4.84642 | CTGAAATCAAGAAAA CAGG CAC CCTG GTCAAACCTGAAACA Cphamn1_2386 2552031 - 2554274 + | molybdopterin oxidoreductase Cphamn1_2387 2554278 - 2554844 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein Cphamn1_2388 2554847 - 2555839 + | Polysulphide reductase NrfD Cphamn1_2389 2556636 - 2556019 - | SOUL heme-binding protein Cphamn1_2390 2557380 - 2556709 - | hypothetical protein Cphamn1_2391 2557694 - 2557401 - | hypothetical protein Cphamn1_2392 2558871 - 2557717 - | hypothetical protein Cphamn1_2393 2559128 - 2559559 + | hypothetical protein TERM 2611 2560179 - 2560148 - g 73 -5 -4.68705 | opp_overlap 2560171, overlap 2560171 ATAACCGGAACAAAA CCATAGGCGACTGC CACG ACAGAGGCCTGTGG ACATATTTTTCCTTT Cphamn1_2394 2559781 - 2561199 + | alpha amylase catalytic region Cphamn1_2395 2562067 - 2561156 - | peptidase M48 Ste24p Cphamn1_2396 2563082 - 2562471 - | hypothetical protein Cphamn1_2397 2563167 - 2563367 + | hypothetical protein Cphamn1_2398 2563510 - 2563767 + | hypothetical protein Cphamn1_2399 2563784 - 2563984 + | putative acetyltransferase Cphamn1_2400 2563996 - 2564160 + | hypothetical protein TERM 2612 2564851 - 2564867 + G 86 -2.9 -5.55664 | overlap 2564848 2564853 GGTTATCGTTGACGG CTTTGCA GTT TGCGATG TTTTTTTCATAATGC Cphamn1_2401 2564235 - 2564879 + | hypothetical protein TERM 2613 2565021 - 2565000 - f 74 -10.1 -3.21671 | overlap 2564998 2564996 2564994 ACTATGAAAGACACA TGTCGCACC CTGC GGTGCGCCA GTAGCAGGCCGTCAA Cphamn1_2402 2565095 - 2565574 + | Methyltransferase type 11 Cphamn1_2403 2565662 - 2566009 + | Cupin 2 conserved barrel domain protein Cphamn1_2404 2566061 - 2566333 + | hypothetical protein TERM 2614 2566353 - 2566337 - f 73 -6.5 -4.41797 | opp_overlap 2566337 2566338, overlap 2566338 AAAAGCACATGAAAA CCGTCGT ATC ACGACGC TTGTAACGGTTTTTC TERM 2615 2566352 - 2566338 - f 74 -10 -3.23452 | opp_overlap 2566337 2566338, overlap 2566337 AAAGCACATGAAAAC CGTCGT ATC ACGACG CTTGTAACGGTTTTT TERM 2616 2566338 - 2566352 + F 70 -10 -2.6183 | opp_overlap 2566338 2566337, overlap 2566337 AAAGCACATGAAAAC CGTCGT ATC ACGACG CTTGTAACGGTTTTT TERM 2617 2566403 - 2566388 - f 72 -5.4 -4.46926 | gap 1, overlap 2566399 CATTTCAGGATAAAA GCGCTGG AAA CCAG-GC AGAATAGCCTATCCG TERM 2618 2567202 - 2567178 - g 86 -8.5 -4.72986 | overlap 2567179 TATTCTCACGAAAAA GTGCCGGACAA TCC TTGACCGGCAT GGCATGGCCGGAATC TERM 2619 2567201 - 2567179 - g 80 -12 -3.4331 | overlap 2567178 ATTCTCACGAAAAAG TGCCGGACAA TCC TTGACCGGCA TGGCATGGCCGGAAT TERM 2620 2567204 - 2567227 + G 71 -7.4 -4.09243 | gap 1 TCCTTGACCGGCATG GCAT-GGCCGG AAT CTGGCCGGTGC TTTTCAGGGCGTATG Cphamn1_2405 2566585 - 2567604 + | hypothetical protein TERM 2621 2568451 - 2568410 - g 73 -11.7 -2.64107 | opp_overlap 2568405 CAAACCGTGATATCA GCGATATGTATATCTCGCC CGAA GGTGAGCTATACATATCGG CCGCAGAAGACAATG Cphamn1_2406 2567701 - 2568687 + | hypothetical protein TERM 2622 2568902 - 2568883 - f 70 -2.8 -4.88736 | overlap 2568886 CATTATGTATAAAAA TGAGCACA ATTG TATGCACA TTCATGGTATTATGC TERM 2623 2570839 - 2570827 - g 70 -9.1 -3.60925 | CTTGAAAAAGATGAA CCCGT CCG ACGGG CAAAATTCGTCAAGA Cphamn1_2408 2569762 - 2571288 + | transposase IS4 family protein Cphamn1_2410 2572847 - 2572554 - | hypothetical protein Cphamn1_2411 2573481 - 2572957 - | hypothetical protein Cphamn1_2412 2573947 - 2573582 - | hypothetical protein Cphamn1_2413 2574871 - 2574032 - | Integrase catalytic region TERM 2624 2574711 - 2574721 + g 71 -6.8 -4.18934 | CACATGCGATACACG CCGT AGT ACGG TTTCTTCAGGTACTG Cphamn1_2414 2575185 - 2574895 - | transposase IS3/IS911 family protein TERM 2625 2575026 - 2575050 + g 70 -9.3 -3.61356 | opp_overlap 2575024, overlap 2575047 CTTTTGAGAACACGT CGGGAGCTTTT TCC AGAAACTCCCG TTTCCACTGGGTAAT TERM 2626 2575659 - 2575681 + r 74 -6.9 -4.30559 | overlap 2575644 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTAACGTTTTGTT Cphamn1_2416 2577237 - 2575840 - | hypothetical protein TERM 2627 2575906 - 2575920 + g 70 -8.6 -3.73072 | opp_overlap 2575906 CTTCAGGCGAACATA GTCAAC CTT GTTGAC TTTCATGACCAGCTT Cphamn1_2417 2578000 - 2577662 - | hypothetical protein Cphamn1_2418 2578521 - 2578075 - | hypothetical protein Cphamn1_2419 2578994 - 2578521 - | plasmid maintenance system antidote protein, XRE family Cphamn1_2420 2579576 - 2578998 - | hypothetical protein TERM 2628 2579404 - 2579418 + g 73 -5 -4.63218 | GCATAATAACCGCCA CAAAGG TCA TCTTTG TTTTCTTCAAAAAAC Cphamn1_2421 2582703 - 2579584 - | type III restriction protein res subunit TERM 2629 2581321 - 2581344 + g 70 -8.9 -3.53012 | opp_overlap 2581321 GTAGTGATTGTAGAA CTGGTCGAG CGCTCC CTTGACCAG TTTCGGAAGAACAGG TERM 2630 2581391 - 2581401 + g 73 -3.2 -5.05606 | GACACGCCCTCTTTT TTCG CCT CGGA TTTCTTTTTCTTGCG TERM 2631 2581882 - 2581895 + g 70 -3.1 -4.90079 | gap 1, overlap 2581882 2581883 CGCGGCATCGAGCTT G-CCGT CGA ACGGGC TTTTCTTGTTGCCCT Cphamn1_2422 2583896 - 2582934 - | UDP-N-acetylenolpyruvoylglucosamine reductase Cphamn1_2423 2584435 - 2584554 + | hypothetical protein TERM 2632 2584786 - 2584797 + T 80 -5.8 -5.04175 | GAGCGTACAAGGACG GGGA ATTT TCCC TTTTTCTGTCATTCC Cphamn1_2424 2585816 - 2585178 - | hypothetical protein Cphamn1_2425 2586786 - 2586181 - | cytochrome B561 TERM 2633 2586455 - 2586466 + g 78 -3.6 -5.06414 | TGCAGCGGGTTCAGA CGGG AGAT CTCG TTTTTCTTGAAAGGG Cphamn1_2426 2588390 - 2586783 - | cytochrome c family protein TERM 2634 2588528 - 2588499 - H 100 -12.2 -5.7946 | opp_overlap 2588499 2588507 GGGCCAATAAAAAAA GCGCATAGGGAC TGCTTT GTCCTTATGCGC TTGATAGCTGTAACG TERM 2635 2588499 - 2588528 + H 95 -14.4 -3.20382 | opp_overlap 2588499, overlap 2588507 GGGCCAATAAAAAAA GCGCATAGGGAC TGCTTT GTCCTTATGCGC TTGATAGCTGTAACG Cphamn1_2427 2588523 - 2588666 + | hypothetical protein Cphamn1_2428 2590152 - 2588719 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2636 2590436 - 2590448 + H 85 -7.7 -4.614 | opp_overlap 2590435 AGTGCGTACAAGGAC GGGAA ACT TTCCC TTTTCTGTCATTCCC Cphamn1_2429 2590747 - 2591181 + | Holliday junction resolvase YqgF Cphamn1_2430 2591309 - 2591890 + | orotate phosphoribosyltransferase Cphamn1_2431 2591902 - 2592768 + | Prephenate dehydrogenase Cphamn1_2432 2592765 - 2593622 + | ATP-NAD/AcoX kinase Cphamn1_2433 2593649 - 2595115 + | hypothetical protein TERM 2637 2595129 - 2595143 + T 86 -2.1 -5.6473 | AGCCTGAGGGACTCT GTTGA ACAGA TCAGC TTTTTTTGGTATTAT Cphamn1_2434 2596684 - 2595188 - | transposase, IS5 family, putative TERM 2638 2595317 - 2595297 - G 100 -8.2 -5.30686 | AACAGGCACAAAAAA GGAGCGGC GAGCA GCCGGTCC AGGTTCATCACGAGG TERM 2639 2597397 - 2597378 - g 86 -3.4 -5.63103 | overlap 2597394 CTGCAAGGAAAAAAA CGGCAACC TGGA AGCAGCCG TTGCTGACTACGGCA Cphamn1_2435 2596845 - 2597603 + | Tetratricopeptide TPR_2 repeat protein Cphamn1_2436 2598211 - 2597642 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Cphamn1_2437 2598323 - 2599729 + | transposase IS4 family protein TERM 2640 2599932 - 2599957 + T 70 -6.1 -4.18018 | gap 1 AGGTCGGGATCTCAG GTTGGCTTCGCC TTT GGC-AGGCCCAC TTTTGGCTCGAGAGG Cphamn1_2438 2600889 - 2600005 - | 2-dehydro-3-deoxyphosphooctonate aldolase Cphamn1_2439 2601309 - 2602631 + | ATPase AAA-2 domain protein Cphamn1_2440 2602647 - 2603768 + | Beta-N-acetylhexosaminidase Cphamn1_2441 2603765 - 2604259 + | putative phosphohistidine phosphatase, SixA Cphamn1_2442 2605438 - 2604434 - | Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) TERM 2641 2604587 - 2604572 - G 74 -4.6 -4.86731 | GCTGCTCAAAGAAAA CACGGC TTTT GTCGTG GAAACTCCTTCAGCA Cphamn1_2443 2606170 - 2605463 - | protein of unknown function DUF205 Cphamn1_2444 2607203 - 2606217 - | phosphoribosylformylglycinamidine cyclo-ligase Cphamn1_2445 2608713 - 2607298 - | aspartate kinase TERM 2642 2609191 - 2609179 - g 100 -2.7 -5.94597 | GAAGAGGAAAAAAAA TTTCG CTC CAAAA CCTTAAAAGGGGAGA Cphamn1_2446 2608806 - 2609432 + | NLP/P60 protein Cphamn1_2447 2609533 - 2610396 + | ribosomal L11 methyltransferase TERM 2643 2610498 - 2610518 + G 70 -11.1 -2.59748 | opp_overlap 2610496 GACAACAATCGAATT CTGCCAGTG CTT CACCGGCAG TCAATTGTCAGAATC Cphamn1_2448 2610414 - 2611349 + | Ppx/GppA phosphatase Cphamn1_2450 2613056 - 2612010 - | transposase IS4 family protein Cphamn1_2451 2613331 - 2613152 - | hypothetical protein Cphamn1_2452 2614741 - 2613533 - | hypothetical protein Cphamn1_2453 2616073 - 2614769 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase Cphamn1_2454 2616777 - 2616103 - | dethiobiotin synthase Cphamn1_2455 2617747 - 2616962 - | biotin biosynthesis protein BioC Cphamn1_2456 2618421 - 2617732 - | protein of unknown function DUF452 Cphamn1_2457 2619847 - 2618648 - | 8-amino-7-oxononanoate synthase Cphamn1_2458 2620863 - 2619844 - | Biotin synthase TERM 2644 2620638 - 2620656 + g 74 -6.7 -4.30416 | gap 1, overlap 2620640 2620641 CGCAAAAACGGCAGT TCTCGGCG CATA CGCCG-GA TTTTGCGTTGATAAT Cphamn1_2459 2621866 - 2620877 - | biotin/acetyl-CoA-carboxylase ligase TERM 2645 2621194 - 2621179 - G 80 -4.7 -5.10461 | opp_overlap 2621179 CCGATTCAAGAAAAA GGGAT GTCGCG ATCCC CTTGATTTCTCCCGG TERM 2646 2621921 - 2621906 - R 100 -10.4 -5.91981 | opp_overlap 2621903 AAAAGCCAAAAAAAA GCGTCG TGAC CGACGC TCATAATTGTCAACC TERM 2647 2622231 - 2622271 + r 75 -9 -3.57144 | opp_overlap 2622210 2622232, overlap 2622212 2622232 2622234 2622235 GGATCCGTTCCGAAA ACGTGGCCGTGATGGT CTTTGTGCA ACCTTCACGGCCATGC TTTGCAGATCAGGAG TERM 2648 2622270 - 2622232 - R 86 -11 -4.07885 | opp_overlap 2622212 2622231 2622232 2622234 2622235, overlap 2622210 GATCCGTTCCGAAAA CGTGGCCGTGATGGTC TTTGTGC AACCTTCACGGCCATG CTTTGCAGATCAGGA TERM 2649 2622232 - 2622270 + r 82 -12.5 -2.74144 | opp_overlap 2622210 2622232, overlap 2622212 2622231 2622234 2622235 GATCCGTTCCGAAAA CGTGGCCGTGATGGT CTTTGTGCA ACCTTCACGGCCATG CTTTGCAGATCAGGA TERM 2650 2622234 - 2622268 + r 78 -11.5 -2.91695 | opp_overlap 2622210 2622232, overlap 2622212 2622232 2622231 2622235 TCCGTTCCGAAAACG TGGCCGTGATGGT CTTTGTGCA ACCTTCACGGCCA TGCTTTGCAGATCAG Cphamn1_2460 2622780 - 2622280 - | Rubrerythrin Cphamn1_2461 2624431 - 2622842 - | Glutamate synthase (NADPH) TERM 2651 2623848 - 2623884 + g 76 -6.4 -4.63218 | gap 1, opp_overlap 2623842 AGCGGAACAGCTGCA CCCGGCCCGATGAC-CG TCCG CGTGACAACCGGCTGGG TTTTGTTCAGGGGCA Cphamn1_2462 2626119 - 2624449 - | N-acetylmuramoyl-L-alanine amidase TERM 2652 2625762 - 2625750 - G 83 -5.5 -5.1287 | TCCAGAGGGAAAAAA GACGC ACC GCATC GACAGCTCTCAGCCA TERM 2653 2626734 - 2626720 - g 76 -5.7 -4.62069 | overlap 2626701 CCGTCAGCTGAAAAA GCTTG CCGGT CAAGC CAATGATATTCTGAT TERM 2654 2627178 - 2627207 + G 75 -9.2 -3.91984 | opp_overlap 2627176 2627179, overlap 2627179 CGGAAATCACCAATC AGTCCGACGCCG AGAAAA CAGCGTCGGACA TTCTTTCACGAATCT TERM 2655 2627206 - 2627179 - g 84 -14.9 -2.83273 | opp_overlap 2627178 2627179, overlap 2627176 GGAAATCACCAATCA GTCCGACGCCG AGAAAA CAGCGTCGGAC ATTCTTTCACGAATC TERM 2656 2627179 - 2627206 + G 78 -12.7 -2.94708 | opp_overlap 2627179 2627176, overlap 2627178 GGAAATCACCAATCA GTCCGACGCCG AGAAAA CAGCGTCGGAC ATTCTTTCACGAATC Cphamn1_2463 2626484 - 2628898 + | DNA topoisomerase I Cphamn1_2464 2631062 - 2628924 - | ferrous iron transport protein B TERM 2657 2630182 - 2630171 - G 90 -5.8 -5.26907 | overlap 2630172 CAATACAAAAGAAAA TCGG CAAG CCGA GCACGCGGTTGAGCA Cphamn1_2465 2631350 - 2631066 - | FeoA family protein Cphamn1_2466 2634235 - 2631488 - | aconitate hydratase 1 Cphamn1_2467 2634827 - 2634444 - | histidine triad (HIT) protein Cphamn1_2468 2635161 - 2635799 + | hypothetical protein TERM 2658 2635843 - 2635876 + T 72 -7.4 -4.14392 | opp_overlap 2635845, overlap 2635845 2635849 CGTTTCCCTTGCAGT AACAGAGGTCCCGG CTTGTT TCGGGGCCTTTGTG TTTTGGGGCTTAAAC TERM 2659 2635845 - 2635874 + T 78 -10 -3.67 | opp_overlap 2635845, overlap 2635843 2635849 TTTCCCTTGCAGTAA CAGAGGTCCCGG CTTGTT TCGGGGCCTTTG TGTTTTGGGGCTTAA TERM 2660 2635849 - 2635870 + T 80 -7.2 -4.45168 | opp_overlap 2635845, overlap 2635845 2635843 CCTTGCAGTAACAGA GGTCCCGG CTTGTT TCGGGGCC TTTGTGTTTTGGGGC TERM 2661 2636032 - 2636004 - T 100 -9.7 -5.86976 | opp_overlap 2636004 GGATAAAACAAAAAA GCTGCCTCATA ATTGACA TATGAGACAGC TTCCTTATACCTAAT Cphamn1_2469 2636523 - 2636050 - | hypothetical protein Cphamn1_2470 2636934 - 2636533 - | hypothetical protein Cphamn1_2471 2638101 - 2637115 - | dihydroorotate dehydrogenase TERM 2662 2637526 - 2637508 - G 76 -7.4 -4.35644 | overlap 2637505 2637522 ATCAGGAGAAAAGAA CCTGTTGA ACA TCACCAGG CCGCTGATACCGGTT Cphamn1_2472 2639651 - 2638206 - | Alkaline phosphatase TERM 2663 2638327 - 2638313 - G 76 -5.7 -4.62783 | overlap 2638315 2638316 2638319 GACCTATGGCAAAAA CAGGA ACAAG TCCTG CGGTATGCACTGAAC TERM 2664 2638772 - 2638750 - G 70 -4.8 -4.59853 | TGAAGCCTGTAAAAA GAGACCGC TTCTGCG ACGGCCTC GTCAAATTCCAGTAC TERM 2665 2638882 - 2638863 - G 76 -5 -4.78107 | GACCATCAGGAAAAA TCCTCGAT CATT ATCCAGGA GTCTGATGCCATGCC TERM 2666 2639613 - 2639600 - G 73 -3.1 -4.94487 | CGACAAAACAGAAAA CTGCA CCGA TACAG GTCACTATACTGATC Cphamn1_2473 2640415 - 2639654 - | alpha/beta hydrolase fold TERM 2667 2641058 - 2641081 + G 71 -7.4 -4.11216 | gap 1, opp_overlap 2641050, overlap 2641059 AAGGCAATCGCTCAT TGTCCGCG-TC AAT GATCGCGGACC TTTTGCGCATGACAG TERM 2668 2641059 - 2641080 + G 71 -10.9 -3.06515 | gap 1, opp_overlap 2641050, overlap 2641058 AGGCAATCGCTCATT GTCCGCG-TC AAT GATCGCGGAC CTTTTGCGCATGACA Cphamn1_2474 2640618 - 2641205 + | rare lipoprotein A Cphamn1_2475 2641218 - 2641583 + | Methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding Cphamn1_2476 2642220 - 2641549 - | transaldolase TERM 2669 2642386 - 2642422 + r 71 -5.1 -4.58663 | overlap 2642387 2642409 CACCATACATCCTGA ATTTTCACCCGTGTCGT CAC ACCGTACGGGCGAAAAA TTTTTCGCCCCTGCT TERM 2670 2642409 - 2642436 + r 86 -10.6 -3.94333 | overlap 2642387 2642386 CCGTGTCGTCACACC GTACGGGCGAAA AATT TTTCGCCCCTGC TTTCCTGTGTTCCTG Cphamn1_2477 2644400 - 2643075 - | hypothetical protein TERM 2671 2643366 - 2643344 - G 72 -9.8 -3.45768 | overlap 2643337 CAGCATAAGTGACAA CCGGCAGTAA ATC CTTCTGCCGG GGATCGCGGAGCTCT TERM 2672 2644396 - 2644384 - G 73 -6.3 -4.4891 | GGCATCAGCACAAAA CAAAG CGG CTTTG ACATTATCCCCCCCC TERM 2673 2644472 - 2644459 - R 100 -4.5 -5.81412 | CTTATGGAAAAAAAA TCAGG ATTA CCCGA TTCCAAGAAAAAGGC Cphamn1_2478 2645862 - 2644465 - | PGAP1 family protein TERM 2674 2645284 - 2645246 - G 74 -4.7 -4.83615 | gap 2 GAGGCCTGAGAAAAA TGTTTCCTGAAGGGCTC AAGCGAA GAGCCCG-CAGGAA-CA AATTCATCACGATCA TERM 2675 2645821 - 2645802 - G 74 -4.2 -4.88067 | opp_overlap 2645803, overlap 2645803 ATCCATGTATAAAAA CCACAGCA GTAT CGCTGCGA TTGTTCCGGTGTTCG Cphamn1_2479 2647350 - 2646154 - | protein of unknown function DUF323 Cphamn1_2480 2647583 - 2647768 + | hypothetical protein Cphamn1_2481 2648659 - 2648153 - | PIN domain protein Cphamn1_2482 2649807 - 2648656 - | protein of unknown function DUF955 TERM 2676 2650075 - 2650039 - H 100 -3 -6.22802 | gap 1, overlap 2650040 2650043 CCCCATAAAAAAAAA CTGACA-TGCAGCGACG TTTT CATCGCCGCAGCATCAT CCATGAACGTCTTCA TERM 2677 2650074 - 2650040 - H 73 -6.5 -4.32054 | gap 1, overlap 2650039 2650043 CCCATAAAAAAAAAC TGACA-TGCAGCGACG TTTT CATCGCCGCAGCATCA TCCATGAACGTCTTC Cphamn1_2483 2650110 - 2650235 + | hypothetical protein Cphamn1_2484 2651565 - 2650507 - | deoxyhypusine synthase TERM 2678 2650840 - 2650850 + g 76 -6.8 -4.5442 | GCCGCCGCCCACCAT CAGG ATA CCTG TTTTGTCGTTGGCGA TERM 2679 2651533 - 2651544 + g 86 -5.8 -5.06472 | TCTGACCGGTTCTTT CAGG AGGT CCTG TTTTGTTATTTCTGT TERM 2680 2651647 - 2651660 + H 75 -5.3 -4.8048 | CCCGACCGGCTTCAG GCAAA CCTC TTTGC TTTTTGCTCTGAAAA TERM 2681 2652636 - 2652620 - g 76 -7.3 -4.28432 | overlap 2652607 AACCCGAACCGAAAA TCACGAA GTT TTCGCGA CTTGCAGGTCTGGAC TERM 2682 2652783 - 2652768 - g 80 -2.5 -5.4588 | overlap 2652771 GAAAATCAGAAAAAA CGATC CGGGAC GACCG GAAGTCTGTACGGTT Cphamn1_2485 2652043 - 2653065 + | tryptophanyl-tRNA synthetase TERM 2683 2653111 - 2653099 - f 74 -5.5 -4.60797 | CCTCTAGACAGAAAA CAGAC AAT GCCTG ATAGCCAACAATTTG TERM 2684 2653550 - 2653539 - g 78 -3.6 -5.1101 | TCATCAGGTAAAAAA CGGG AAAC CCCA TCCGGATATCTTCCT Cphamn1_2486 2653105 - 2653803 + | beta-phosphoglucomutase family hydrolase TERM 2685 2653860 - 2653850 - g 71 -6.8 -4.27297 | overlap 2653853 AACAGAACACATAAA GCAG GCC CTGC ACAAAGCCAGCATTC TERM 2686 2654480 - 2654457 - g 73 -5.4 -4.62904 | gap 1, opp_overlap 2654457 AAACATGGCGAAAAA CTCG-TTGAAT CCG ACTCAACCGAG CTTTTTAAACAAACC TERM 2687 2654723 - 2654709 - g 86 -8.6 -4.72272 | overlap 2654718 CTGGGGCAGGAAAAA GACAAG GTA CTTGTC AAATCAAGCGGTGAA Cphamn1_2487 2653821 - 2655482 + | arginyl-tRNA synthetase TERM 2688 2655528 - 2655508 - T 100 -7.5 -5.69023 | opp_overlap 2655508 AAAACATCAAAAAAA GGCTGTCTC ATA AAGGCAGCC TCTCGTATGTTAAGC Cphamn1_2488 2656471 - 2655875 - | nicotinate (nicotinamide) nucleotide adenylyltransferase Cphamn1_2489 2657382 - 2656483 - | Tetratricopeptide TPR_2 repeat protein TERM 2689 2657533 - 2657500 - R 100 -21.3 -3.55622 | opp_overlap 2657502 2657508, overlap 2657508 GGCAACGGCTCTAAA TACTAAAAGGCTGCC ACAA GGCAGCCTTTTAGTA TCCTAAGTTGATCGT TERM 2690 2657502 - 2657531 + r 100 -19.5 -2.83409 | opp_overlap 2657500 2657508, overlap 2657508 CAACGGCTCTAAATA CTAAAAGGCTGCC ACAA GGCAGCCTTTTAG TATCCTAAGTTGATC TERM 2691 2657525 - 2657508 - R 100 -12.7 -4.49756 | opp_overlap 2657502 2657508, overlap 2657500 CTCTAAATACTAAAA GGCTGCC ACAA GGCAGCC TTTTAGTATCCTAAG TERM 2692 2657508 - 2657525 + r 100 -12.7 -4.371 | opp_overlap 2657508 2657500, overlap 2657502 CTCTAAATACTAAAA GGCTGCC ACAA GGCAGCC TTTTAGTATCCTAAG Cphamn1_2490 2657973 - 2657722 - | hypothetical protein Cphamn1_2491 2658562 - 2658110 - | hypothetical protein TERM 2693 2658664 - 2658641 - R 87 -8.8 -4.57882 | overlap 2658643 CGGAACAATAAGAAA CAGGAAAGGG AATT CCCCTTCCAG CGATAGAATATAATG TERM 2694 2658662 - 2658643 - R 82 -10 -3.88654 | overlap 2658641 GAACAATAAGAAACA GGAAAGGG AATT CCCCTTCC AGCGATAGAATATAA TERM 2695 2658827 - 2658861 + r 71 -10 -2.70932 | overlap 2658823 CGATTTTTAACCCTT TGCAGGCAAAGGTCTG TAA CAGAAATTAGCCTGCA TAATTCACCAAAGGG TERM 2696 2658996 - 2659016 + r 77 -11.2 -2.68544 | overlap 2658991 CCCCCTCTCCTGTCA TTCCCGTG CTTGA CACGGGAA TCCATTCTTGATATT Cphamn1_2492 2660403 - 2659297 - | plasmid maintenance system antidote protein, XRE family TERM 2697 2659554 - 2659572 + g 70 -2.5 -5.0538 | gap 1, overlap 2659557 CCGATTCCTGTTGCG CAC-TTTC GATC GAAATGTG TTTTTTCCCGTGAAG Cphamn1_2493 2660744 - 2660403 - | plasmid maintenance system killer Cphamn1_2494 2661194 - 2660784 - | hypothetical protein TERM 2698 2660876 - 2660897 + g 70 -8.7 -3.53343 | opp_overlap 2660876 2660892 2660893, overlap 2660868 2660866 2660892 2660893 TGACCTTGCCGAAAT CGGCTGTTC TCCA GAACGGCTG TTTAAACCAGCCATT Cphamn1_2495 2664567 - 2661220 - | ATPase (AAA+ superfamily)-like protein Cphamn1_2496 2667459 - 2664571 - | protein of unknown function DUF1156 TERM 2699 2667333 - 2667312 - G 71 -11.5 -2.84325 | overlap 2667307 TCTGCGCAAAGATCA CCGCTCGCG CCGC CGCCAGCGG CCGCCGCGCCCACCA Cphamn1_2497 2668505 - 2667456 - | protein of unknown function DUF1016 TERM 2700 2668001 - 2668019 + g 90 -11.8 -4.11484 | opp_overlap 2667996 CTTCAGGATACAGTT CTCTCAAC GCT GTTGAGAG TTTTGGCGGATTCAA Cphamn1_2498 2670867 - 2668543 - | helicase domain protein TERM 2701 2669665 - 2669648 - G 85 -7.7 -4.88918 | gap 1, opp_overlap 2669664, overlap 2669649 2669650 CCAGGGCAAACAAAA GCGGCCAG AGG CTGGCC-C TGAGGAGCAATCAGG TERM 2702 2669664 - 2669650 - G 70 -11.4 -2.70854 | overlap 2669648 2669649 AGGGCAAACAAAAGC GGCCAG AGG CTGGCC CTGAGGAGCAATCAG TERM 2703 2669664 - 2669680 + g 72 -3.7 -4.82901 | opp_overlap 2669648 2669649 CGGCCAGAGGCTGGC CCTGA GGAGCAA TCAGG TTTTTCTCGAAGGCA TERM 2704 2671303 - 2671267 - R 100 -11.5 -5.06735 | TATAAACGAGAAAAA GCCTGTCTTTCCGGAAC ATC GCATCGGAAAGACGGGC TTCAAAAGAGAGGAT TERM 2705 2671513 - 2671494 - R 82 -7.8 -4.55491 | opp_overlap 2671494, overlap 2671489 GATCCAATGAGAAAA GCCTGCTT TCTC AGGCAGGC TTTTGCAACTATCGA TERM 2706 2671494 - 2671513 + r 82 -10 -4.13014 | opp_overlap 2671494 2671489 GATCCAATGAGAAAA GCCTGCTT TCTC AGGCAGGC TTTTGCAACTATCGA Cphamn1_2499 2672096 - 2671554 - | ATP synthase F1, delta subunit Cphamn1_2500 2672638 - 2672111 - | ATP synthase F0, B subunit TERM 2707 2672709 - 2672670 - R 80 -8.7 -4.21974 | gap 1, opp_overlap 2672672, overlap 2672671 TTACGATTGAATAAA TCCTGAATGCGGCACATT GCGAT AATTTGCCGCATTC-GGT TTATGACGTATGATC TERM 2708 2672708 - 2672671 - R 81 -12.2 -3.12702 | gap 1, opp_overlap 2672672, overlap 2672670 TACGATTGAATAAAT CCTGAATGCGGCACATT GCGAT AATTTGCCGCATTC-GG TTTATGACGTATGAT TERM 2709 2672672 - 2672708 + r 100 -15.3 -3.91412 | opp_overlap 2672671 2672670 ACGATTGAATAAATC CTGAATGCGGCACATTG CGA TAATTTGCCGCATTCGG TTTATGACGTATGAT Cphamn1_2501 2672984 - 2672748 - | ATP synthase F0, C subunit TERM 2710 2672799 - 2672789 - G 70 -4.6 -4.74801 | TAACCTCACCAAAAA GGGC AAC ACCC TCGATAAGTGCGGCA Cphamn1_2502 2674107 - 2673091 - | ATP synthase F0, A subunit Cphamn1_2503 2674490 - 2674104 - | hypothetical protein Cphamn1_2504 2674787 - 2674539 - | hypothetical protein Cphamn1_2505 2675213 - 2674824 - | hypothetical protein TERM 2711 2674911 - 2674894 - G 71 -6.9 -4.16943 | opp_overlap 2674894 2674893 CCTGACATCTGAAAA TTCCCGG TAAT CCGGGCA CCTTTTTCAACATCG TERM 2712 2675156 - 2675178 + g 100 -6.9 -5.34632 | overlap 2675141 CCGGTGAAAAAATCC CGGTTGTCC CTATA GGGCTACCG TTTTTATGTTTTGTT Cphamn1_2506 2676724 - 2675327 - | hypothetical protein TERM 2713 2676648 - 2676636 - G 77 -10.5 -3.6106 | GCGAAGACGCTCAAA CCGGC CCT GCCGG TGAGCTGGTCGTCGC TERM 2714 2676800 - 2676815 + r 81 -3.2 -5.45652 | AATATAACACTTTAC GCCC ATAGGTGA GGGC TTTTTTATTGCAAAT Cphamn1_2507 2676983 - 2676834 - | hypothetical protein Cphamn1_2508 2677810 - 2677022 - | Peptidase M23 TERM 2715 2677615 - 2677585 - G 70 -3.3 -4.76041 | overlap 2677586 CAGACTGATCAAAAA GGAGCTGC-CTTTCC TGT GGAGAGAGCA-CCCC GCCATGCAAAAAAGA Cphamn1_2509 2678805 - 2677816 - | UDP-glucose 4-epimerase Cphamn1_2510 2678899 - 2679648 + | protein of unknown function DUF152 Cphamn1_2511 2679832 - 2679614 - | hypothetical protein TERM 2716 2680671 - 2680647 - g 71 -5.6 -4.57341 | overlap 2680648 2680662 AACGCTGCGGAAAAA GGCCTCGCAG ACAGA CTGAGAGGCG CAGCAGTAGATATCT Cphamn1_2512 2680002 - 2681021 + | C-20 methyltransferase BchU TERM 2717 2681049 - 2681073 + T 72 -10 -2.93623 | opp_overlap 2681049, overlap 2681044 2681051 CAAAAAGCAGTAAAA GAGGCTGTCT CAAAA GGGCAGCCTC TCGTATTTTGAGCAG TERM 2718 2681073 - 2681049 - T 80 -7.1 -4.45077 | opp_overlap 2681049 2681044 2681051 CAAAAAGCAGTAAAA GAGGCTGTC TCAAAAG GGCAGCCTC TCGTATTTTGAGCAG TERM 2719 2681205 - 2681181 - T 70 -9.3 -3.14344 | TAGTTGCCGTATCAA CCCCGTGTATT AGT ATTACACAGGG CAGCATGACTGCATG Cphamn1_2513 2682585 - 2681293 - | acetyl-CoA hydrolase/transferase TERM 2720 2681536 - 2681505 - G 80 -10.2 -3.66018 | gap 1 TGAGCATGGGAACAA TCCGT-GATTCCCCG CGG CGGGTAACCGACGGA AGGGCAAGGATAGGC Cphamn1_2514 2684466 - 2682709 - | succinate dehydrogenase, flavoprotein subunit Cphamn1_2515 2684968 - 2684480 - | succinate dehydrogenase, membrane subunit, putative Cphamn1_2516 2685429 - 2684965 - | succinate dehydrogenase, cytochrome b556 subunit TERM 2721 2685370 - 2685381 + g 71 -5.8 -4.40132 | AGGTGTCGTGTCTGA CTGC CCCG GCAG TTTGTTCTGATTCAT TERM 2722 2685464 - 2685436 - R 71 -10.3 -2.82884 | overlap 2685435 AAACACCATCCAAAT CCCCATTGCGTAA CGA TCGCGCAATGAGG CACTAGTAAAAACCC Cphamn1_2517 2686771 - 2685509 - | cell division protein FtsZ TERM 2723 2685817 - 2685831 + g 70 -8.6 -3.67558 | TATCGCGGCTGAAGC CGGTAA TAA TTACCG TTATTCGAATCTCTC TERM 2724 2686422 - 2686408 - G 77 -11.4 -3.43564 | opp_overlap 2686403 2686408 CAATGGAAGCGATAA CCGGAG CCG CTCCGG TTCCTGTACCTTTTC TERM 2725 2686408 - 2686422 + g 76 -11.4 -3.32268 | opp_overlap 2686408, overlap 2686403 CAATGGAAGCGATAA CCGGAG CCG CTCCGG TTCCTGTACCTTTTC TERM 2726 2686654 - 2686679 + g 70 -9.1 -3.53012 | gap 1, opp_overlap 2686638 CAACCCCGGCTATCC TGCGGTCGATCA TGT TG-TTGACCGCA TTTCCCCCGCAGCCG Cphamn1_2518 2688119 - 2686833 - | cell division protein FtsA TERM 2727 2687929 - 2687942 + g 70 -8.1 -3.74693 | GATTCGCGCTCTGCA TCGGC AACC GCCGA TTTAATGGCATCAAC Cphamn1_2519 2689007 - 2688144 - | Polypeptide-transport-associated domain protein FtsQ-type TERM 2728 2688464 - 2688491 + g 79 -11.4 -3.63922 | overlap 2688462 TTCTCTCCCGCGCTT TCGAGAGCTGAG ATGC TTCAGCTTTCGA TGTTTTGAGACCAGT Cphamn1_2520 2689939 - 2689007 - | UDP-N-acetylenolpyruvoylglucosamine reductase Cphamn1_2521 2691403 - 2690006 - | UDP-N-acetylmuramate/alanine ligase TERM 2729 2690196 - 2690220 + g 90 -8.6 -5.0538 | TCCGCAACAAGCTCG CCGCTGAC CCCTGGATA GTCAGCGG TTTTTTCCCGTGCGG Cphamn1_2522 2692508 - 2691414 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Cphamn1_2523 2693710 - 2692505 - | cell cycle protein TERM 2730 2693388 - 2693378 - G 79 -6.8 -4.7339 | AATAAACTTGAAAAA CAGG AGC CCTG CAAGCAGTATCATAC Cphamn1_2524 2695107 - 2693707 - | UDP-N-acetylmuramoylalanine/D-glutamate ligase TERM 2731 2694181 - 2694211 + g 74 -7.4 -4.1585 | opp_overlap 2694171, overlap 2694182 AACATCCACTCCGGC AGCTCTTGTGGCAG CAA CCGCCGCCAGAGCG TTTTCAAGATTATGA TERM 2732 2694182 - 2694210 + g 71 -10.9 -3.09028 | opp_overlap 2694171, overlap 2694181 ACATCCACTCCGGCA GCTCTTGTGGCAG CAA CCGCCGCCAGAGC GTTTTCAAGATTATG TERM 2733 2694422 - 2694391 - G 76 -8 -4.1552 | gap 1, opp_overlap 2694396, overlap 2694413 CAGCTGCGGAACAAA CGCTCCGCCGCCC TCAAAAT GAGCG-CGAAGCG TTTCATCGTCGGCAT Cphamn1_2525 2696219 - 2695110 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 2734 2695390 - 2695364 - G 76 -11.6 -3.28712 | GCTCTTTTTTTATAA GCAGCGCGATAA CCG CTATAGCGCTGC CAAGAGCAAGCGAAC Cphamn1_2526 2697673 - 2696237 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase Cphamn1_2527 2699181 - 2697679 - | UDP-N-acetylmuramyl-tripeptide synthetase TERM 2735 2698700 - 2698730 + g 70 -9.7 -3.27951 | opp_overlap 2698688, overlap 2698715 AGACGATGCAGTTCT TCCGCTTCGGGAG TCGTC CTCTCGAGGAGGA TCTTCTCATCCCCTG TERM 2736 2699040 - 2699020 - G 78 -9.7 -3.92075 | AGCGTCACCGATAAA TTCGTGCCC ATC GGTCACGAA ACCCCGCACCGCAAC Cphamn1_2528 2701204 - 2699192 - | Peptidoglycan glycosyltransferase TERM 2737 2700562 - 2700543 - G 70 -4.2 -4.63218 | CCTGCCGCAAGAAAA CGCTCTCC GGTT GCAGAACG CTGATAGACCTTGAT Cphamn1_2529 2701709 - 2701224 - | hypothetical protein Cphamn1_2530 2702691 - 2701693 - | S-adenosyl-methyltransferase MraW TERM 2738 2702159 - 2702177 + g 100 -4.5 -6.36459 | opp_overlap 2702158 CTCCATGAACAAATG GCAGAAG CGATC CTCCTGC TTTTTTTTTCTTCCC Cphamn1_2531 2703149 - 2702697 - | protein of unknown function UPF0040 Cphamn1_2532 2703453 - 2703956 + | hypothetical protein TERM 2739 2704296 - 2704278 - g 70 -2.5 -5.00616 | GTGCGCTTGAAAAAA TCTATAA ATGCA TCATAGA AGAGACAAGGCTGTT Cphamn1_2533 2704031 - 2704357 + | Chorismate mutase TERM 2740 2705240 - 2705212 - g 89 -10.9 -4.40605 | ACCTACAAATATAAA GGCCTGCCTCCCG CAC CGATAGGCAGTCC GGGAGCCGCCTCGAT Cphamn1_2534 2704375 - 2705394 + | aminodeoxychorismate lyase Cphamn1_2535 2705482 - 2706675 + | Phosphoglycerate kinase TERM 2741 2707469 - 2707442 - g 79 -7 -4.72201 | gap 1 CTGCACAAAAAAGAA CCTGCTGCTCCGG TCT CCGAAG-AGGAGG TAGACGCCATTCTCG Cphamn1_2536 2706740 - 2707561 + | Rhomboid family protein TERM 2742 2707733 - 2707746 + G 70 -9.5 -3.29511 | opp_overlap 2707718 2707733 2707728, overlap 2707718 CGCCGATAAATTACA GGCGC TTGT GCGCC TTGTCAAAAGCTGGC Cphamn1_2537 2707575 - 2708042 + | protein of unknown function DUF1232 Cphamn1_2538 2708211 - 2708546 + | hypothetical protein Cphamn1_2539 2711918 - 2708661 - | SMC domain protein TERM 2743 2710549 - 2710559 + g 90 -8.2 -5.05782 | GCGGCATCTGCTACG GCCG TAT CGGC TTTTTTGAGATCAGT TERM 2744 2710686 - 2710702 + g 71 -5.1 -4.52589 | CTCTTTGAGGTACAG CACTGCA GCT TCCAGTG TTTTCTGTGCAGCGG TERM 2745 2710811 - 2710825 + g 74 -2.1 -5.14563 | CTTCTGATACAGCCT TTGTC TGTTC GGCAA TTTTTTGATCAAGCG Cphamn1_2540 2712375 - 2711962 - | GTP-binding signal recognition particle SRP54, G-domain Cphamn1_2541 2713861 - 2712365 - | nuclease SbcCD, D subunit TERM 2746 2713165 - 2713175 + g 70 -4.6 -4.63932 | CCGGTTGCCGGAGGA GTGC GTG GCGC TTTTGTTCGGCGATC TERM 2747 2713430 - 2713417 - G 70 -2.3 -4.99861 | opp_overlap 2713420 CATCAATCACAAAAA CCTCG TCTT CCAGG GCGTCCGTTACGGCA Cphamn1_2542 2714991 - 2714263 - | protein of unknown function DUF45 Cphamn1_2543 2718200 - 2714988 - | type I site-specific deoxyribonuclease, HsdR family TERM 2748 2716691 - 2716679 - G 71 -6.2 -4.36914 | opp_overlap 2716685 GCCCCTCGTATAAAA GCGG AACGA CCGC GCCGTCTTCCACCGC TERM 2749 2718159 - 2718173 + g 76 -2.8 -5.07011 | opp_overlap 2718161, overlap 2718161 CAGCTGCAAAGCAGG AATCTG GGA CAGATG TTTTTCGTTTATCTG Cphamn1_2544 2718580 - 2718197 - | hypothetical protein TERM 2750 2718369 - 2718397 + g 100 -21.9 -3.72324 | opp_overlap 2718357 ATAGCGCCATGACGG GTGGTTGTCCGGA ATT TCCGGACAACCAC TTCTTCATCCAACTC Cphamn1_2545 2719320 - 2718577 - | filamentation induced by cAMP protein Fic Cphamn1_2546 2720167 - 2719334 - | hypothetical protein TERM 2751 2719463 - 2719473 + g 95 -2.4 -5.86965 | opp_overlap 2719463 TTGGTCGTTTAGCAA CTGC TCA GCCG TTTTTTTTGCTCCAT Cphamn1_2547 2720412 - 2720179 - | hypothetical protein Cphamn1_2548 2721632 - 2720415 - | restriction modification system DNA specificity domain Cphamn1_2549 2722464 - 2721625 - | hypothetical protein TERM 2752 2721805 - 2721825 + g 76 -6.1 -4.73388 | CAGTTGGGAGACGTT GGCAAAGTC GCG GATATTGCC TTTTTCATCCGGGTT TERM 2753 2722257 - 2722240 - G 79 -11.3 -3.59979 | opp_overlap 2722240 GGCGTTCATTCTAAA GTGGTCG AATT CGACCAC TTTAAAATTCGGGTT TERM 2754 2722240 - 2722257 + g 82 -11.3 -3.66921 | opp_overlap 2722240 GGCGTTCATTCTAAA GTGGTCG AATT CGACCAC TTTAAAATTCGGGTT Cphamn1_2550 2724188 - 2722605 - | type I restriction-modification system, M subunit TERM 2755 2723735 - 2723751 + g 75 -8.7 -3.95817 | overlap 2723745 GACGGCGGTTACGGT CCTTGGT CTT GCCAAGG TTTGCTTCGCTATTG Cphamn1_2551 2724637 - 2724236 - | hypothetical protein Cphamn1_2552 2725224 - 2724634 - | hypothetical protein TERM 2756 2725382 - 2725348 - H 100 -9.2 -5.3104 | overlap 2725350 2725354 CCACGAAAAACAAAA CACATATCCCCGAAGC ATC GCTCCGGGAAAACGGG ATTAATCAGACGGGT TERM 2757 2725380 - 2725350 - H 85 -10.4 -4.26857 | overlap 2725348 2725354 ACGAAAAACAAAACA CATATCCCCGAAGC ATC GCTCCGGGAAAACG GGATTAATCAGACGG TERM 2758 2725376 - 2725354 - H 85 -12 -3.37871 | overlap 2725350 2725348 AAAACAAAACACATA TCCCCGAAGC ATC GCTCCGGGAA AACGGGATTAATCAG Cphamn1_2553 2725472 - 2725705 + | hypothetical protein Cphamn1_2554 2725710 - 2727560 + | hypothetical protein TERM 2759 2727577 - 2727607 + T 100 -14.1 -3.34895 | overlap 2727596 ACTCTTCCGCCTTTT CAGCACGATTGTC ATCCA GGCAGTCGTGCTG TTGCTTCACGATCGC Cphamn1_2555 2728397 - 2727624 - | hypothetical protein TERM 2760 2728054 - 2728068 + g 74 -11.4 -3.08679 | opp_overlap 2728052 2728029 CCCGCGGAAGGCACC GTGCGC AGG GCGCAC TCTTCGCTCAGAACG Cphamn1_2556 2728848 - 2728414 - | cyclase/dehydrase TERM 2761 2730169 - 2730156 - g 78 -2.3 -5.27335 | GCCGTCAAAGAAAAA GCGAT AGCC AACGC CGCGAAAGTAAACGT Cphamn1_2557 2729022 - 2730200 + | phosphoribosylglycinamide formyltransferase 2 Cphamn1_2558 2731731 - 2730289 - | RNA methyltransferase, TrmA family TERM 2762 2730852 - 2730814 - G 70 -2.4 -5.00616 | gap 1, opp_overlap 2730814, overlap 2730818 GTTGGTCTGAAAAAA CGAATTGGCGGATATGC GGAACT GCAGAT-CGCCAAGACG TTCCTGAATAACCCC TERM 2763 2730898 - 2730910 + g 90 -9.1 -4.7173 | AAACTCTTTCTCTCC CACCG CAA CGGTG TTTTTCCGTGTGGTG TERM 2764 2731398 - 2731410 + g 83 -3.3 -5.39755 | CGCCGATATGCACCA GAGCA TCA TGCAC TTTTTTCTGCTTGTA Cphamn1_2559 2732654 - 2731731 - | ROK family protein Cphamn1_2560 2733273 - 2732689 - | phosphoesterase PA-phosphatase related Cphamn1_2561 2735046 - 2733283 - | 60 kDa inner membrane insertion protein TERM 2765 2733359 - 2733371 + g 76 -5.5 -4.75472 | opp_overlap 2733359, overlap 2733360 ATCTTGGGCAGATCA TCAGC AGA GCTGG TTTTATTGATGTAGA TERM 2766 2733753 - 2733735 - G 70 -8 -3.79906 | opp_overlap 2733732 2733735 2733745 GCATCTGCAGAAGAA CCGGGAGG CAC CCACCCAG TGGATTGACTCCGGC TERM 2767 2734694 - 2734674 - G 85 -3.9 -5.40072 | TGGTCTGGAAAAAAA GCGACAATG CTC CGCTGTCAC TGTTTTTAATCAGGT Cphamn1_2562 2735317 - 2735039 - | protein of unknown function DUF37 TERM 2768 2735186 - 2735166 - G 72 -4 -4.77775 | overlap 2735169 ATCGCATAAAAGAAA TTATGCGT AGTGA ACGCATCA AGAGCATACTGAGAA TERM 2769 2735285 - 2735275 - G 80 -2.4 -5.42164 | opp_overlap 2735275 CAGAAATAAGAAAAA TCGG CAC CCGG TTGATAATTTTCCAG Cphamn1_2563 2735709 - 2735353 - | ribonuclease P protein component, putative Cphamn1_2564 2735964 - 2735803 - | ribosomal protein L34