TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.707982 %AT, 3358486 nt, 15937 terms. Intergenic: 0.757985 %AT, H2T: 690518 nt, 6701 terms; T2T: 117894 nt, 3000 terms; H2H: 155497 nt, 3379 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|169834729|ref|NC_010418.1| Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence (length 266785) CLK_A0001 2561 - 219 - | type I topoisomease TERM 1 469 - 481 + g 71 -7.7 -3.38812 | overlap 468 TCACATAGAGGGCAT TTGCC TAA GGCAA TATTATTGAAAGAGG TERM 2 881 - 892 + g 88 -4.4 -5.79595 | GTTTTAATAATTGGC CAGT CTGC ACTG TTTTTTCTTTTGACA TERM 3 1143 - 1168 + g 72 -4.7 -4.87389 | AGTATTTAATTCAGC CTCAGTGACCT TTTT AGGTTTTTGAG TTTCTTTTTCAGCTA TERM 4 1609 - 1625 + g 72 -5.1 -4.7373 | TCTGAGTTTGTCCTA GGGTATG TTA CATAGCC TTTTTCATAAAGTCC TERM 5 1972 - 1985 + g 78 -6.7 -4.63218 | ATAGGTATTAGTACT CTACC AACA GGTAG TTTTATTCCGCCAGC TERM 6 2613 - 2670 + r 100 -19.2 -3.67775 | opp_overlap 2621, overlap 2621 2625 TTTATTATTTCATTG TAAAAAAATAAAGTAAGCTATATTTA ATTTTC TAAATATAGCTTACTTTATTTCTTTA TTATTAAGTAACCAT TERM 7 2662 - 2621 - R 100 -17.1 -5.44119 | opp_overlap 2621 2613 2625 TTCATTGTAAAAAAA TAAAGTAAGCTATATTTAA TTTT CTAAATATAGCTTACTTTA TTTCTTTATTATTAA TERM 8 2621 - 2662 + r 100 -16.4 -4.78597 | opp_overlap 2621, overlap 2613 2625 TTCATTGTAAAAAAA TAAAGTAAGCTATATTTA ATTTTC TAAATATAGCTTACTTTA TTTCTTTATTATTAA TERM 9 2625 - 2658 + r 100 -12.8 -4.86861 | opp_overlap 2621, overlap 2621 2613 TTGTAAAAAAATAAA GTAAGCTATATTTA ATTTTC TAAATATAGCTTAC TTTATTTCTTTATTA recG 4643 - 2655 - | ATP-dependent DNA helicase RecG TERM 10 4487 - 4514 + g 70 -6.4 -4.12603 | CAGCTATAGAAGTTG TTTGTCCATCTA TTAA TTGATGGATAAA TTGTTGTTTCCTAAA CLK_A0003 5172 - 4717 - | hypothetical protein TERM 11 4924 - 4948 + g 75 -7.3 -4.0371 | opp_overlap 4931, overlap 4926 ATATAAATATTTTGT TTTAGAAGAAA TAG TTTCTTCTATA TTTCTATAAGGAGTA TERM 12 4926 - 4946 + g 83 -9.9 -3.61232 | opp_overlap 4931, overlap 4924 ATAAATATTTTGTTT TAGAAGAAA TAG TTTCTTCTA TATTTCTATAAGGAG CLK_A0004 5787 - 5230 - | hypothetical protein CLK_A0005 5977 - 7032 + | HD domain-containing protein TERM 13 7059 - 7019 - T 80 -8.5 -4.20868 | opp_overlap 7018 7016 7021 7026 7028, overlap 6999 7024 CTGTGAAAACAATAA TACAAGATAGGTAAGTATA TAG TACACTTACCTATCTGATG CTTATTATATTAATT TERM 14 7054 - 7024 - T 100 -15 -3.94411 | opp_overlap 7021 7018 7016 7026 7028, overlap 7019 AAAACAATAATACAA GATAGGTAAGTATA TAG TACACTTACCTATC TGATGCTTATTATAT TERM 15 7026 - 7052 + T 76 -9.6 -2.89822 | opp_overlap 7024 7019, overlap 7021 7018 7016 7028 AACAATAATACAAGA TAGGTAAGTATA TAG TACACTTACCTA TCTGATGCTTATTAT CLK_A0006 7972 - 7073 - | CMP-binding-factor 1 TERM 16 7853 - 7872 + g 70 -6.5 -4.07993 | overlap 7851 CTTAATACTTACTGA CAAAAGC TCTCCT GCTTTTG TATTTTTAGTCTTTA TERM 17 8118 - 8102 - R 100 -9.5 -6.02546 | GTAAACTAAAAAAAA GCTGAAA AAA TTTCAGC TAAACTACACCTATA CLK_A0007 9019 - 8129 - | RNA polymerase sigma-E factor CLK_A0008 9668 - 9069 - | hypothetical protein TERM 18 9441 - 9465 + gr 71 -7.3 -3.74792 | opp_overlap 9447, overlap 9445 ATTTTTAAAATCTGT TATAGATAGTA ATT TACTATCTAGA TTTACATATCTGATA CLK_A0009 9843 - 9643 - | hypothetical protein TERM 19 9945 - 9908 - R 95 -8.1 -5.2197 | gap 1, opp_overlap 9908 TACAAAAATTAAAAA TGATACTAATC-GATTTT TTA AAAACCTAATTAGTATCA TTTTTAATATTTTAC CLK_A0010 10243 - 10019 - | hypothetical protein CLK_A0011 10653 - 10309 - | hypothetical protein CLK_A0012 10993 - 10712 - | hypothetical protein CLK_A0013 11470 - 11036 - | hypothetical protein CLK_A0014 12481 - 11552 - | hypothetical protein TERM 20 11667 - 11681 + g 85 -5.8 -5.43553 | GTATTTACATTATTT GAATTA TTA TAATTC TTTTCTTTTTTCGCT TERM 21 12182 - 12143 - G 77 -8.9 -3.61328 | gap 1, opp_overlap 12155, overlap 12155 ATCAATATTCTTAAA TGTTCC-AACAAATTGTT TTACT AACAATTTGTTAGGAGCA GTTAAAGCAGAGTAA CLK_A0015 12636 - 13097 + | hypothetical protein TERM 22 13156 - 13185 + T 78 -8 -4.21303 | opp_overlap 13156 TAATATTAAAAGAAA GCACAAGAAATA GATGCA TATTTCTTGCGC TTTATCATTATTTTT TERM 23 13185 - 13156 - T 100 -10.2 -4.77698 | opp_overlap 13156 TAATATTAAAAGAAA GCACAAGAAATA GATGCA TATTTCTTGCGC TTTATCATTATTTTT CLK_A0016 13508 - 13236 - | hypothetical protein TERM 24 13566 - 13608 + r 100 -18.2 -2.80303 | opp_overlap 13571, overlap 13560 13571 ATTTTAGGAAAAATA AAAAAGCACATTATTTAAAC TAA GTTTAAATAATGTGCTTTTC ATTGATTATTTATTG TERM 25 13603 - 13571 - R 100 -18.1 -5.95286 | opp_overlap 13566 13560 13571 AGGAAAAATAAAAAA GCACATTATTTAAAC TAA GTTTAAATAATGTGC TTTTCATTGATTATT TERM 26 13571 - 13603 + r 100 -18.1 -4.52101 | opp_overlap 13571, overlap 13566 13560 AGGAAAAATAAAAAA GCACATTATTTAAAC TAA GTTTAAATAATGTGC TTTTCATTGATTATT CLK_A0017 16245 - 13669 - | penicillin-binding protein 1A (PBP-1a) (PBP1a) TERM 27 13731 - 13747 + g 83 -3.1 -5.73978 | GAGCATTATCTTCAG TAGTATT TTT AATATTA TTTTTTCTTTGTAGT TERM 28 15200 - 15213 + g 70 -3.9 -5.09245 | opp_overlap 15200 AATCCGCTGCTAACA TTGTT TTGT AACAA TTTTTGTGCTTTTGA CLK_A0018 17158 - 16256 - | efflux ABC transporter, permease protein CLK_A0019 17810 - 17127 - | methionine import ATP-binding protein MetN 2 CLK_A0020 18173 - 17829 - | hypothetical protein TERM 29 18236 - 18283 + r 79 -3.8 -5.72254 | gap 1, opp_overlap 18240 18243, overlap 18240 18241 18243 18246 GTAAAATAATTGCAA AAAATA-ATAAGATGTAAGCAAA AAA TTTACTTACATCTTATATATTAA TTTTTTATTGTTTGC TERM 30 18240 - 18279 + r 82 -9 -4.05512 | gap 1, opp_overlap 18240 18243, overlap 18236 18241 18243 18246 AATAATTGCAAAAAA TA-ATAAGATGTAAGCAAA AAA TTTACTTACATCTTATATA TTAATTTTTTATTGT TERM 31 18279 - 18240 - R 100 -11.2 -5.11937 | gap 1, opp_overlap 18240 18236 18241 18243 18246, overlap 18243 AATAATTGCAAAAAA TA-ATAAGATGTAAGCAAA AAA TTTACTTACATCTTATATA TTAATTTTTTATTGT TERM 32 18241 - 18277 + r 83 -9.7 -3.5834 | opp_overlap 18240 18243, overlap 18240 18236 18243 18246 ATAATTGCAAAAAAT AATAAGATGTAAGCAAA AAA TTTACTTACATCTTATA TATTAATTTTTTATT TERM 33 18275 - 18243 - R 100 -14.5 -4.63993 | opp_overlap 18241 18240 18236 18243 18246, overlap 18240 AATTGCAAAAAATAA TAAGATGTAAGCAAA AAA TTTACTTACATCTTA TATATTAATTTTTTA TERM 34 18243 - 18275 + r 95 -12.3 -3.32867 | opp_overlap 18243 18240, overlap 18241 18240 18236 18246 AATTGCAAAAAATAA TAAGATGTAAGCAAA AAA TTTACTTACATCTTA TATATTAATTTTTTA TERM 35 18246 - 18272 + r 84 -9.6 -3.75419 | opp_overlap 18243 18240, overlap 18243 18241 18240 18236 TGCAAAAAATAATAA GATGTAAGCAAA AAA TTTACTTACATC TTATATATTAATTTT CLK_A0021 20768 - 18288 - | superfamily II DNA/RNA helicase CLK_A0022 20964 - 20809 - | hypothetical protein CLK_A0023 23966 - 21450 - | superfamily II DNA/RNA helicase TERM 36 23033 - 23060 + g 88 -9.4 -4.14874 | gap 1, opp_overlap 23029 23037 CAAAAGCAATATTAG GC-AATTTGATAG CAG CTATCAAATTAGC TTTTCCCCCTATTAT TERM 37 23055 - 23037 - G 73 -9 -3.137 | opp_overlap 23033, overlap 23029 AGCAATATTAGGCAA TTTGATAG CAG CTATCAAA TTAGCTTTTCCCCCT TERM 38 24073 - 24048 - R 100 -9.9 -5.61881 | opp_overlap 24048 TTGCAAAAATAAAAA GTAGGAATACT TTAA AATATTCCTAC TTTTTGCTTATAAAG TERM 39 24048 - 24073 + r 90 -7.7 -4.93365 | opp_overlap 24048 TTGCAAAAATAAAAA GTAGGAATACT TTAA AATATTCCTAC TTTTTGCTTATAAAG CLK_A0024 24392 - 24081 - | hypothetical protein CLK_A0025 24810 - 24448 - | hypothetical protein TERM 40 24913 - 24888 - R 100 -10.7 -5.95539 | opp_overlap 24892 TTGCAAATAAAAAAA CATAGTATATT CTTT AATATACTATG CTAAAATAATTTTAT CLK_A0026 26497 - 25028 - | hypothetical protein TERM 41 26357 - 26378 + g 77 -7.5 -4.34993 | opp_overlap 26346 26357 26360, overlap 26353 TATATAATTATTAAT TAATGAATT CATA AATTCATTA TTGTTTTCATATTTA CLK_A0027 26778 - 26635 - | hypothetical protein CLK_A0028 27173 - 26802 - | hypothetical protein TERM 42 27275 - 27247 - R 78 -6.9 -4.88918 | opp_overlap 27251 27253, overlap 27249 TTATTGCAAATAAAA GACATAGCATATT AAA AATATACTATGTT GAAAGATCTTATTAA TERM 43 27273 - 27249 - R 86 -9.5 -4.06281 | opp_overlap 27251 27253, overlap 27247 ATTGCAAATAAAAGA CATAGCATATT AAA AATATACTATG TTGAAAGATCTTATT CLK_A0029 27690 - 27445 - | hypothetical protein CLK_A0030 28510 - 28118 - | hypothetical protein CLK_A0031 28980 - 28588 - | hypothetical protein CLK_A0032 29397 - 29215 - | hypothetical protein CLK_A0033 30143 - 29724 - | hypothetical protein CLK_A0034 30474 - 30226 - | hypothetical protein CLK_A0035 30926 - 30504 - | hypothetical protein CLK_A0036 31251 - 30982 - | hypothetical protein CLK_A0037 31504 - 31319 - | hypothetical protein CLK_A0038 32048 - 31602 - | hypothetical protein CLK_A0039 32212 - 32066 - | hypothetical protein CLK_A0040 32666 - 32172 - | hypothetical protein TERM 44 32250 - 32262 + gr 85 -3.5 -5.80951 | overlap 32256 TGCCGGATATCTATA TATTT TTA AAATA TTTTTTATTTTGCAT TERM 45 32746 - 32761 + r 70 -6.2 -4.35747 | TAATGATAAATATTC TCCTAT TAAC ATAGGA TTTGCTTTATTTTTA CLK_A0041 32941 - 32777 - | hypothetical protein TERM 46 33113 - 33087 - R 100 -11.8 -5.79595 | opp_overlap 33089 TTTCAAAATAAAAAA CACGATATATTA TTT TAATATACCGTG TTAAAAAAATTTATT CLK_A0042 33483 - 33130 - | hypothetical protein CLK_A0043 33929 - 33549 - | death-on-curing family protein TERM 47 33620 - 33638 + g 71 -4.6 -4.70659 | opp_overlap 33620 33623, overlap 33623 CTTTGGCTATACTAA GACCTAAT TTT ATTAGTTC TTTTTGAGTATAGCC TERM 48 33822 - 33846 + g 73 -8.7 -3.13867 | opp_overlap 33826, overlap 33826 TTGAAATGGATTTTC TAAAGCACTTT TAA GAAGTGCTTTG TCTCTTACTCCATGA TERM 49 33826 - 33842 + g 77 -7.3 -4.22927 | opp_overlap 33826, overlap 33822 AATGGATTTTCTAAA GCACTTT TAA GAAGTGC TTTGTCTCTTACTCC CLK_A0044 34096 - 33923 - | hypothetical protein TERM 50 34200 - 34176 - R 100 -9.5 -5.73978 | opp_overlap 34178 34180 ATTACAAATAAAAAA CATAGTATATT AAA AACATACTATG TTGAAAAACTTACTA CLK_A0045 35633 - 34275 - | putative Cpp50 TERM 51 35765 - 35733 - R 100 -12.3 -4.80453 | opp_overlap 35738 35740, overlap 35736 GCATTATAAAATAAA GAACACAGTATATTT TTT AAATATACTGTGTTA AGAAAATTTATTATT TERM 52 35762 - 35736 - R 100 -14 -4.48317 | opp_overlap 35738 35740, overlap 35733 TTATAAAATAAAGAA CACAGTATATTT TTT AAATATACTGTG TTAAGAAAATTTATT TERM 53 35738 - 35760 + r 85 -10.8 -3.03635 | opp_overlap 35736 35733, overlap 35740 ATAAAATAAAGAACA CAGTATATTT TTT AAATATACTG TGTTAAGAAAATTTA TERM 54 35812 - 35839 + r 73 -7.2 -4.16814 | opp_overlap 35818, overlap 35814 TTTCTATTTTAATGG TATAGATTTTGT TTAA ACAAAATCTATC TTATTTCTATCATAA TERM 55 35814 - 35837 + r 90 -9.8 -3.67344 | opp_overlap 35818, overlap 35812 TCTATTTTAATGGTA TAGATTTTGT TTAA ACAAAATCTA TCTTATTTCTATCAT CLK_A0046 36510 - 35824 - | hypothetical protein TERM 56 35920 - 35930 + g 71 -3.2 -5.20783 | overlap 35905 TGCCAATACTGGAAC TGGC ATT GCTA TTTTTGTATTTAAAT CLK_A0047 37100 - 36570 - | hypothetical protein TERM 57 37201 - 37176 - R 100 -10.7 -5.64421 | opp_overlap 37178 37180 ATTTCAAATAAAAAA CATAGTATATT AAAA AATATACTATG TTAAAAAGTTACTAT CLK_A0048 37806 - 37240 - | hypothetical protein TERM 58 37561 - 37571 + g 70 -4 -4.90455 | TGCATGTTTAGCATT GTTA TAA TAAC TTTTTGTGAATCTCT CLK_A0049 38257 - 37898 - | putative lipoprotein CLK_A0050 38444 - 38289 - | hypothetical protein CLK_A0051 38942 - 38502 - | hypothetical protein CLK_A0052 39255 - 39046 - | hypothetical protein TERM 59 39358 - 39334 - R 100 -9.5 -5.79595 | opp_overlap 39336 39338 39357 TTTCAAAACAAAAAA CATAGTATATT AAA AACATACTATG TTAAAAAATTTAATA CLK_A0053 39733 - 39419 - | hypothetical protein CLK_A0054 40219 - 39803 - | hypothetical protein CLK_A0055 40676 - 40347 - | hypothetical protein CLK_A0056 40859 - 40722 - | hypothetical protein CLK_A0057 41117 - 40914 - | putative CDC2L2 protein CLK_A0058 41342 - 41124 - | hypothetical protein CLK_A0059 41635 - 41414 - | hypothetical protein TERM 60 41756 - 41719 - R 100 -8.7 -6.09196 | overlap 41697 TTCAAAATAAAAAAA TAAGCATCTGATAGTCT ATTA AAACCATCAAATACTTA TTTTAAAAACACATA CLK_A0060 41963 - 41790 - | hypothetical protein TERM 61 42183 - 42144 - R 78 -8 -4.20783 | overlap 42151 ACCCTATTTAAGAAA TATAAAAGGACCTGCTAA CATA TGAACAGGCCCTTTTGTA AATACAAATTAGAAT TERM 62 42176 - 42151 - R 76 -6.1 -4.89838 | overlap 42144 TTAAGAAATATAAAA GGACCTGCTAA CATA TGAACAGGCCC TTTTGTAAATACAAA CLK_A0061 43226 - 42192 - | hypothetical protein TERM 63 43269 - 43315 + r 71 -8.5 -3.03286 | opp_overlap 43280, overlap 43268 43280 TAATTATTATTCAAA AAAAATAAAAACAACTATT TTGGCTTTT AATAGTTGTTTTTATTTTA ATATTTTATTTAACT TERM 64 43280 - 43304 + r 70 -3 -5.52079 | opp_overlap 43280, overlap 43269 43268 CAAAAAAAATAAAAA CAACTATT TTGGCTTTT AATAGTTG TTTTTATTTTAATAT TERM 65 43304 - 43280 - R 76 -3 -5.94743 | opp_overlap 43280 43269 43268 CAAAAAAAATAAAAA CAACTATT TTGGCTTTT AATAGTTG TTTTTATTTTAATAT CLK_A0062 44094 - 43321 - | hypothetical protein TERM 66 43547 - 43563 + g 79 -5.9 -5.10933 | overlap 43549 TCAGCAAATATAACT TTTGCAT ATA ATGCAGA TTTTGTTTTCCCTGC CLK_A0063 44864 - 44130 - | hypothetical protein TERM 67 44598 - 44608 + g 82 -5.4 -5.37865 | TCCTTCTTTATGGGT TGCT TCT AGCA TTTTTTCATTATTAA TERM 68 44991 - 44969 - R 100 -8.6 -5.9218 | opp_overlap 44968 44969 TATACAACAAAAAAA CAAATATCCA TTA TAGATATTTG CTTTTTTACTAATTT CLK_A0064 47125 - 45032 - | DNA helicase II TERM 69 45416 - 45388 - G 80 -6.3 -4.86773 | opp_overlap 45388 TAAAAGTATCAAAAA TGTTATTATTA ATATCTG TAATAATAACA TTTGACCATTCTAGG TERM 70 45577 - 45589 + g 86 -6.3 -5.4111 | opp_overlap 45577 TAATGATATCAACTA TCTGA GAA TCAGA TTTTTTATCATTATT CLK_A0065 47433 - 47122 - | hypothetical protein TERM 71 47366 - 47352 - G 74 -7.2 -3.97511 | opp_overlap 47352 CATTGAATACAATAA TTAGCA CAT TGCTAA TTCTCTTTGCATATT TERM 72 47352 - 47366 + g 71 -7.2 -3.85859 | opp_overlap 47352 CATTGAATACAATAA TTAGCA CAT TGCTAA TTCTCTTTGCATATT TERM 73 47490 - 47456 - R 100 -16.8 -3.65812 | opp_overlap 47462 47464, overlap 47459 CCCCTTTCAACATAA TAAGCAGAGAACATAA TCA TTATATTCTCTGCTTA AAAACCCGTTCACTT TERM 74 47487 - 47459 - R 100 -14.1 -3.9644 | opp_overlap 47462 47464, overlap 47456 CTTTCAACATAATAA GCAGAGAACATAA TCA TTATATTCTCTGC TTAAAAACCCGTTCA TERM 75 47814 - 47833 + r 93 -6.6 -5.89659 | opp_overlap 47814 TTTTCAAAATAAAAA GTTTAAAA GAAA TTTTAAAC TTTTTATTTTTTTAT TERM 76 47833 - 47814 - R 88 -6.6 -5.45802 | opp_overlap 47814 TTTTCAAAATAAAAA GTTTAAAA GAAA TTTTAAAC TTTTTATTTTTTTAT CLK_A0066 48471 - 47851 - | thermonuclease (TNase) (micrococcal nuclease)(staphylococcal nuclease) CLK_A0067 48947 - 48645 - | hypothetical protein TERM 77 49111 - 49071 - H 87 -10 -3.30038 | gap 1, opp_overlap 49079 49080, overlap 49078 TATATCTAAATCGAA TGGACAAGTTTCGCGAAAT CAGC ATTTCGCG-AACTTATCTA AAAAATTAAGACAAT TERM 78 49104 - 49078 - H 77 -8.9 -3.43965 | gap 1, opp_overlap 49079 49080, overlap 49071 AAATCGAATGGACAA GTTTCGCGAAAT CAGC ATTTCGCG-AAC TTATCTAAAAAATTA TERM 79 49079 - 49104 + H 79 -9.1 -3.494 | opp_overlap 49078 49071, overlap 49080 AATCGAATGGACAAG TTTCGCGAAAT CAGC ATTTCGCGAAC TTATCTAAAAAATTA TERM 80 49080 - 49103 + H 90 -12.6 -2.69319 | opp_overlap 49078 49071, overlap 49079 ATCGAATGGACAAGT TTCGCGAAAT CAGC ATTTCGCGAA CTTATCTAAAAAATT CLK_A0068 49430 - 49561 + | transposase CLK_A0069 49800 - 50750 + | LycA TERM 81 50759 - 50792 + T 100 -9 -5.45802 | opp_overlap 50761, overlap 50761 AAAATAAATATCAAA AAGAAGTTAGTTCC TTAATT GGAGCTAACTTCTC TTTTTATTTTGAAAA TERM 82 50790 - 50761 - T 100 -9.4 -4.97461 | opp_overlap 50759 50761 AATAAATATCAAAAA GAAGTTAGTTCC TTAATT GGAGCTAACTTC TCTTTTTATTTTGAA TERM 83 50761 - 50790 + T 100 -11.6 -4.3613 | opp_overlap 50761, overlap 50759 AATAAATATCAAAAA GAAGTTAGTTCC TTAATT GGAGCTAACTTC TCTTTTTATTTTGAA TERM 84 50861 - 50907 + T 75 -6.9 -4.43173 | gap 1, opp_overlap 50864 50868 50869, overlap 50869 AAAGGAACTCAAAAT CAATGAATCCCATATACATAGA ATTT TCTATGTATATCGG-TTTAGTG TTTTAGCTTATTTTT TERM 85 50901 - 50868 - T 75 -8.3 -3.54177 | opp_overlap 50861 50869, overlap 50864 50869 CTCAAAATCAATGAA TCCCATATACATAGA ATTT TCTATGTATATCGGT TTAGTGTTTTAGCTT TERM 86 50869 - 50900 + T 100 -11.8 -4.0828 | opp_overlap 50868 50864 50869, overlap 50861 TCAAAATCAATGAAT CCCATATACATAGA ATTT TCTATGTATATCGG TTTAGTGTTTTAGCT TERM 87 50900 - 50869 - T 86 -11.8 -2.71783 | opp_overlap 50869 50861, overlap 50868 50864 TCAAAATCAATGAAT CCCATATACATAGA ATTT TCTATGTATATCGG TTTAGTGTTTTAGCT TERM 88 51569 - 51546 - T 100 -12.6 -5.01811 | opp_overlap 51539 51538 51549 51552 51565 GGAGGAAATTAAAAA GCATAAGGTT ATAG AACCTTATGC TTAAGAAATATTTTA CLK_A0070 53106 - 51634 - | toxin complex component ORF-X3 TERM 89 51730 - 51742 + g 74 -6.3 -4.4891 | opp_overlap 51729 AGAATTCCATATGAT TTCAG AAA CTGAA TTTTCTAATGATAAA CLK_A0071 55397 - 53145 - | toxin complex component ORF-X2 CLK_A0072 55839 - 55411 - | toxin complex component ORF-X1 botR 57623 - 57069 - | transcriptional regulator BotR, P-21 TERM 90 57100 - 57120 + g 93 -5.5 -5.71295 | overlap 57098 TCTTCTAATATAGGC TTTAGCTTT TCT AATGCTAAA TTTTTATTTTTATAT CLK_A0074 57804 - 59054 + | hypothetical protein TERM 91 59919 - 59897 - g 70 -5 -4.64346 | opp_overlap 59906 AAAAATTAAAAATAA TAATGATATT GCT AATAGCATTA AATTATATTTAGAAC ntnh 59070 - 62549 + | botulinum neurotoxin type A3 nontoxic-nonhemagglutinin subunit TERM 92 63514 - 63500 - g 77 -7.2 -4.26461 | opp_overlap 63499, overlap 63497 ATGAAGCTAAAACAA TAGTAG GTA CTACTA CTCCATTACAGTATA TERM 93 65943 - 65925 - g 72 -7.6 -3.64866 | opp_overlap 65925 ATACTATATGTTAAA TTTATTTG ATC CAAATAAA TATGTCGATGTAAAT boNT/A3 62593 - 66471 + | botulinum neurotoxin type A3 TERM 94 66623 - 66655 + T 100 -16.5 -4.35874 | opp_overlap 66622 66619 AAATTAAGATACTAT GGTCTGATTTCGATA TTC TATCGGAGTCAGACC TTTTAACTTCTCTTG TERM 95 67149 - 67168 + T 74 -8.6 -3.406 | opp_overlap 67149 67148 GAATACTCCTACAAG CCTACGAA TTTA TTCGTGGG TTAGTTGACTCTTCA CLK_A0077 68325 - 67150 - | hypothetical protein TERM 96 68006 - 68016 + g 72 -4 -5.08178 | ACAACCTCGCTCCAT TTCA TTT TGAA TTTTTCTCTATATGT CLK_A0078 68892 - 68545 - | hypothetical protein CLK_A0079 69509 - 69294 - | hypothetical protein TERM 97 69487 - 69498 + g 71 -3 -5.24551 | opp_overlap 69486, overlap 69486 CCATTCCTTATCAAT GTAT AAAA ATAC TTTTTATTCATTTCA CLK_A0080 69909 - 69574 - | hypothetical protein TERM 98 69932 - 69961 + r 80 -9.5 -3.2594 | opp_overlap 69930, overlap 69931 AATATTTTCAATAGT TGGTTCTATCA AAGGTTAA TGATAGAACCA TAATTTTCTTAAAAT CLK_A0081 70983 - 70093 - | hypothetical protein CLK_A0082 71555 - 71025 - | hypothetical protein CLK_A0083 72045 - 71626 - | hypothetical protein CLK_A0084 72436 - 72233 - | putative ABC transporter substrate-binding lipoprotein TERM 99 72472 - 72485 + r 75 -3.9 -5.47159 | TTCAATACTCATATT TGTTA TTCC TAACA TTTTTATTTATTCGA TERM 100 72594 - 72647 + r 100 -20.3 -4.22442 | opp_overlap 72600 72604, overlap 72600 72604 TTCGTATTTCTATAT TTAAAATAAATGAATGTATGATTAT AATC AAAATCATACATTCATTTATTTTAA TTGTTTACTTTATTT TERM 101 72600 - 72641 + r 100 -14.9 -4.63107 | opp_overlap 72600 72604, overlap 72594 72604 TTTCTATATTTAAAA TAAATGAATGTATGATTAT AATC AAAATCATACATTCATTTA TTTTAATTGTTTACT TERM 102 72641 - 72600 - R 100 -14.9 -4.2349 | opp_overlap 72600 72594 72604, overlap 72604 TTTCTATATTTAAAA TAAATGAATGTATGATTAT AATC AAAATCATACATTCATTTA TTTTAATTGTTTACT TERM 103 72604 - 72637 + r 100 -11.3 -4.81843 | opp_overlap 72600 72604, overlap 72600 72594 TATATTTAAAATAAA TGAATGTATGATTAT AATC AAAATCATACATTCA TTTATTTTAATTGTT TERM 104 72637 - 72604 - R 100 -11.3 -4.70515 | opp_overlap 72604 72600 72594, overlap 72600 TATATTTAAAATAAA TGAATGTATGATTAT AATC AAAATCATACATTCA TTTATTTTAATTGTT CLK_A0085 73531 - 72797 - | hypothetical protein CLK_A0086 74075 - 73542 - | hypothetical protein TERM 105 74326 - 74359 + r 95 -12.8 -3.68445 | opp_overlap 74330 74356 TAGCTACTATTTTAA TGAATGTATGATTT CATCTA AAATCATACATTCA TTATTGAAAATTTTT TERM 106 74355 - 74330 - R 74 -8.5 -3.36289 | opp_overlap 74326 TACTATTTTAATGAA TGTATGATTTC ATCT AAAATCATACA TTCATTATTGAAAAT CLK_A0087 75134 - 74439 - | hypothetical protein CLK_A0088 75724 - 75278 - | hypothetical protein TERM 107 75358 - 75383 + g 70 -6.3 -4.15833 | gap 1, opp_overlap 75346 AACCCCCCATTAATG GGAAAAAAC-CT TTA GGTGTTTTTTCC TTTTGCAATAATAAT CLK_A0089 76315 - 75770 - | hypothetical protein CLK_A0090 76828 - 76526 - | hypothetical protein CLK_A0091 77068 - 76868 - | hypothetical protein TERM 108 77166 - 77141 - R 100 -8.4 -5.71712 | overlap 77100 TGTGACATAAAAAAA TACTGCACCA ATTGAA TAGTGCAGTA TAAAACTTATTATAT CLK_A0092 77754 - 77182 - | hypothetical protein CLK_A0093 77995 - 77771 - | hypothetical protein TERM 109 78060 - 78032 - R 82 -10.5 -2.89881 | opp_overlap 78015 78030 78029 78026, overlap 78015 TATTTATCTTATATA TCTATTGTACGAT ATT ATCGTACAATATA CAATGGTTTTATAAG CLK_A0094 78564 - 78202 - | hypothetical protein CLK_A0095 79407 - 78643 - | hypothetical protein CLK_A0096 79922 - 79476 - | hypothetical protein CLK_A0097 80321 - 79956 - | hypothetical protein CLK_A0098 82285 - 80462 - | reverse transcriptase/endonuclease protein TERM 110 81023 - 81034 + g 70 -4.4 -4.95302 | TTTATTCGGGTGAAG TACC TTAA GGTA TTTTCTTATCTTTAG CLK_A0099 83163 - 82888 - | hypothetical protein CLK_A0100 83371 - 83222 - | hypothetical protein CLK_A0101 83861 - 83424 - | phage protein CLK_A0102 84195 - 83923 - | hypothetical protein CLK_A0103 84605 - 84246 - | hypothetical protein CLK_A0104 85422 - 84724 - | hypothetical protein CLK_A0105 85645 - 85475 - | hypothetical protein CLK_A0106 85965 - 85786 - | hypothetical protein TERM 111 86301 - 86275 - R 100 -8.9 -5.79595 | opp_overlap 86277 TCTGAAAACAAAAAA CACGATATATT CTCTT AATATACCGTG TTAAAGAAAATTATT TERM 112 86704 - 86683 - R 100 -7.5 -5.95539 | opp_overlap 86685 TTGCAAATAAAAAAA TAGTATATT AAAA AATATACTA TGCTGAAAAATTTTG CLK_A0107 87272 - 86778 - | hypothetical protein CLK_A0108 87498 - 87295 - | hypothetical protein CLK_A0109 88039 - 87581 - | hypothetical protein CLK_A0110 88434 - 88111 - | hypothetical protein TERM 113 88224 - 88234 + g 72 -5.4 -4.74917 | opp_overlap 88224 CAGTATACAAACTTA TCCT AAA AGGA TTTTGTATATTTAAT TERM 114 88239 - 88257 + g 77 -7.6 -4.16943 | TCCTAAAAGGATTTT GTATATTT AAT AAATATAC TTTTGCCATATCAAA CLK_A0111 88768 - 88538 - | hypothetical protein TERM 115 88844 - 88865 + r 73 -7.9 -3.70109 | opp_overlap 88843 88844, overlap 88845 TTTATGTTCTGAAAC TCCCAAGCC TAAA GGCATGGGG TTCTTAGGTACTATA TERM 116 88845 - 88864 + r 76 -9.2 -2.81584 | opp_overlap 88843 88844, overlap 88844 TTATGTTCTGAAACT CCCAAGCC TAAA GGCATGGG GTTCTTAGGTACTAT TERM 117 89076 - 89095 + r 75 -9.2 -2.7264 | opp_overlap 89091, overlap 89075 89089 TATTGTGCTATCCAT CCCACACC TAAA GGAGTGGG CTTTCCGCACAGTTT CLK_A0112 89305 - 89138 - | hypothetical protein CLK_A0113 90019 - 89330 - | hypothetical protein CLK_A0114 90174 - 90776 + | single-strand binding protein TERM 118 90845 - 90812 - f 78 -6.3 -5.01497 | gap 1, opp_overlap 90812, overlap 90836 ATTAGTATATAAAAA TATTGTGTAAT-ACAT TCA AAGTTATTACACAATA TTTTTTGTAAAATTT TERM 119 90812 - 90845 + F 90 -7.1 -5.28826 | gap 1, opp_overlap 90812 90836 ATTAGTATATAAAAA TATTGTGTAATACATT CAA AGT-TATTACACAATA TTTTTTGTAAAATTT TERM 120 91164 - 91132 - g 72 -6.5 -4.34737 | opp_overlap 91132 91134, overlap 91134 TGACTAATGAAGAAA TATCATTATTTATAG ATC CTAAAAATAATGATG TTTTAAAAATAAAGC TERM 121 91132 - 91164 + G 83 -8.7 -4.11216 | opp_overlap 91132 91134, overlap 91134 TGACTAATGAAGAAA TATCATTATTTATAG ATC CTAAAAATAATGATG TTTTAAAAATAAAGC TERM 122 91134 - 91162 + G 81 -9.1 -3.65542 | opp_overlap 91132 91134, overlap 91132 ACTAATGAAGAAATA TCATTATTTATAG ATC CTAAAAATAATGA TGTTTTAAAAATAAA TERM 123 91162 - 91134 - g 84 -9.1 -3.77023 | opp_overlap 91134 91132, overlap 91132 ACTAATGAAGAAATA TCATTATTTATAG ATC CTAAAAATAATGA TGTTTTAAAAATAAA TERM 124 91220 - 91201 - g 72 -5 -4.8384 | opp_overlap 91202, overlap 91202 91217 GAAATAATTCAAAAA TTGCTCTT GCAA AAGAGCAT ACTATATCAGATATT TERM 125 91219 - 91202 - g 73 -8.5 -3.48677 | opp_overlap 91202, overlap 91201 91217 AAATAATTCAAAAAT TGCTCTT GCAA AAGAGCA TACTATATCAGATAT TERM 126 91505 - 91481 - g 77 -7.2 -4.29977 | overlap 91482 AAATAACCTAAGAAA TCTGTCATCA TTAAT TGATGACAGC ACAGAAGAGGTTATA TERM 127 91504 - 91482 - g 85 -10.7 -3.16359 | overlap 91481 AATAACCTAAGAAAT CTGTCATCA TTAAT TGATGACAG CACAGAAGAGGTTAT TERM 128 91800 - 91774 - g 74 -7.5 -3.99062 | gap 1 AAGACTCACTAGAAA TTGATGGCAACA GCTC TGTTGC-ATCAA TGAAAGGTGAAGTAA dnaN 90876 - 92021 + | DNA polymerase III, beta subunit TERM 129 92032 - 92070 + F 100 -17.2 -3.35679 | opp_overlap 92032 92037 92039, overlap 92039 GTTAAAATTTCAATA TAAAAGATCCAACTATAT TTA ATATAGTTGGATTTTTTA TTATACCTCAGGAAC TERM 130 92070 - 92032 - f 100 -15 -3.15366 | opp_overlap 92032 92039, overlap 92037 92039 GTTAAAATTTCAATA TAAAAGATCCAACTATAT TTA ATATAGTTGGATTTTTTA TTATACCTCAGGAAC TERM 131 92065 - 92037 - f 100 -10.5 -4.6821 | opp_overlap 92032 92039, overlap 92032 92039 AATTTCAATATAAAA GATCCAACTATAT TTA ATATAGTTGGATT TTTTATTATACCTCA TERM 132 92039 - 92063 + F 100 -13.1 -5.56673 | opp_overlap 92039 92037 92032, overlap 92032 TTTCAATATAAAAGA TCCAACTATAT TTA ATATAGTTGGA TTTTTTATTATACCT TERM 133 92063 - 92039 - f 100 -13.1 -3.94773 | opp_overlap 92032 92039, overlap 92037 92032 TTTCAATATAAAAGA TCCAACTATAT TTA ATATAGTTGGA TTTTTTATTATACCT TERM 134 94382 - 94371 - g 73 -5.8 -4.652 | AAAGCAGTCGAAAAA GCTG AAGC CAGC AAAAATCAAGCTGAT TERM 135 95110 - 95091 - g 74 -6.4 -4.37211 | GAAACTTATAATAAA GCCTTAAC TGCT GTAAAGGC ACTGGAAGATAGCCA TERM 136 95651 - 95641 - g 85 -2.6 -5.92399 | CAATAAAAGAAAAAA TAAA TGA TTTA AAAAATACAAAAGAA CLK_A0116 92430 - 96050 + | hypothetical protein TERM 137 96088 - 96059 - T 70 -3.6 -5.11389 | opp_overlap 96060, overlap 96054 96060 AGAATAGAAATAAAA GGACTTAGGCAT TTTTAC ATGTCTAAGTCT TTTTTTAAATATAAT TERM 138 96060 - 96087 + T 100 -9.3 -5.50499 | opp_overlap 96059 96054 96060 GAATAGAAATAAAAG GACTTAGGCAT TTTTAC ATGTCTAAGTC TTTTTTTAAATATAA CLK_A0117 96810 - 96142 - | hypothetical protein CLK_A0118 99731 - 96813 - | hypothetical protein TERM 139 97666 - 97680 + g 73 -5.7 -4.59109 | AATAAACAATATGGT GGAGA GAATA TCTCC TTTTTACCCAATCTA TERM 140 98104 - 98120 + g 81 -6.5 -5.1615 | overlap 98103 TTAAACATAAGTATT GCTGCTG GTG CATCAGC TTTTTTAAATATTAA TERM 141 98493 - 98517 + g 81 -9.5 -3.57674 | opp_overlap 98500, overlap 98492 98500 CTTTAAATTTGGTAG TCTAAAATCAT CTA ATGATTTTGGA TCTTTGTAATCAAAT TERM 142 100002 - 99974 - R 80 -8.2 -4.34402 | opp_overlap 99974 TTTTTTATACTAAAA GGTAGCAAGGCT TGTAT AATCTTGCTACC TTTCTATTATGCTTC TERM 143 99974 - 100002 + r 80 -8.2 -4.30911 | opp_overlap 99974 TTTTTTATACTAAAA GGTAGCAAGGCT TGTAT AATCTTGCTACC TTTCTATTATGCTTC CLK_A0119 103674 - 100009 - | hypothetical protein TERM 144 102243 - 102272 + g 71 -8.7 -2.7395 | overlap 102242 102246 TTGCTTTACTTCCAG CAGTTACTTTACC ATCG GGTAAAGTAATAG ATTTAACACCTATAT TERM 145 102246 - 102269 + g 85 -11.2 -2.64472 | overlap 102243 102242 CTTTACTTCCAGCAG TTACTTTACC ATCG GGTAAAGTAA TAGATTTAACACCTA TERM 146 103924 - 103901 - R 93 -6.8 -5.9362 | opp_overlap 103901 GAAAACATAAAAAAA CACTAGATAC TTTT ATACCTAGTG TTTCATACATTATTT TERM 147 103989 - 103966 - R 90 -5.4 -5.8901 | opp_overlap 103966 ATATAAAATAAAAAA CTTCTAAC TTTAATTT GTTAGAAG CTTTAGATATTAATT CLK_A0120 104597 - 104004 - | acetyltransferase TERM 148 104053 - 104064 + g 71 -3 -5.3236 | ATATTTAATATTTTT TCAA CGTT TTGA TTTTTTATAAATTCT CLK_A0121 104887 - 104627 - | hypothetical protein CLK_A0122 106169 - 105126 - | hypothetical protein TERM 149 106247 - 106223 - R 76 -3 -5.86609 | opp_overlap 106223 106212 CCAAAAAAATAAAAA CAACTATT TTGACTTTT AATAGTTG TTTTTATTTGAATAT CLK_A0123 107059 - 106265 - | hypothetical protein TERM 150 107028 - 107048 + g 70 -6.3 -4.19177 | ATTAATAATACCACT GAAATTAAT CTA GTTAATTTC TTTCTATTCACCAAT CLK_A0124 107847 - 107098 - | hypothetical protein TERM 151 107211 - 107195 - G 72 -8.1 -3.28924 | opp_overlap 107195 107192 107203 TATTTTGGTGTATAA TATGATG CCC CATCATA TGATTGGTCTAATCT TERM 152 107419 - 107433 + g 75 -4.2 -5.27335 | ATACATATAATCAGT TCCACC TAG GGTTGA TTTTTGTTTAAAAGC TERM 153 107950 - 107982 + H 81 -5.7 -5.35365 | opp_overlap 107950 TATACACAACAAAAA GCCTAATTTATATAT TTT AAAAATAAGTTAGGC TTTTTGTTGTGTTTT CLK_A0125 108421 - 108822 + | hypothetical protein TERM 154 108914 - 108902 - g 72 -4.9 -4.99638 | opp_overlap 108902 108907 ACATTCATATAAAAA TCTAT TTA ATAGA ATTAATCTTAAAGAA CLK_A0126 108819 - 111221 + | hypothetical protein CLK_A0127 111409 - 112002 + | hypothetical protein TERM 155 112108 - 112085 - f 100 -9.6 -5.23765 | opp_overlap 112085 112087 TAAAGAACATAAAAA GACCTGCTAA TTTA TAAGCAGGTC TATCTATAAATGGAA TERM 156 112085 - 112108 + F 78 -9.6 -3.0094 | opp_overlap 112085, overlap 112087 TAAAGAACATAAAAA GACCTGCTAA TTTA TAAGCAGGTC TATCTATAAATGGAA TERM 157 112280 - 112308 + G 81 -10.6 -3.16564 | opp_overlap 112280, overlap 112287 TTCAATTAAAAAAAA TGATAAATTTAG AATTA CTAAATTTATCA TTGATGAAATAAAAA TERM 158 112308 - 112280 - g 100 -10.6 -5.95166 | opp_overlap 112280 112287 TTCAATTAAAAAAAA TGATAAATTTAG AATTA CTAAATTTATCA TTGATGAAATAAAAA CLK_A0128 112257 - 113768 + | hypothetical protein CLK_A0129 113746 - 114948 + | hypothetical protein TERM 159 114983 - 114959 - T 81 -8.7 -3.9467 | opp_overlap 114959, overlap 114962 AATGATATATAAGAA GAAGTGAGTTA AAT TAATTCACTTC TTTTAACTTTCCAAC TERM 160 114959 - 114983 + T 100 -10.9 -4.35524 | opp_overlap 114959 114962 AATGATATATAAGAA GAAGTGAGTTA AAT TAATTCACTTC TTTTAACTTTCCAAC CLK_A0130 115113 - 114967 - | hypothetical protein CLK_A0131 115718 - 115317 - | hypothetical protein TERM 161 115824 - 115879 + H 100 -14.5 -3.97622 | opp_overlap 115830 115834, overlap 115813 115834 ATATTAAAAATATTT TATATATAAATTAACATCAGTTCCC AATTTA GCGAACTGATGTTAATTTATGAATA TTATCTTTTAAGTAA TERM 162 115873 - 115830 - H 100 -15.8 -2.92851 | gap 1, opp_overlap 115824 115834, overlap 115834 AAAATATTTTATATA TAAATTAACATCAGTTC-CCA ATT TAGCGAACTGATGTTAATTTA TGAATATTATCTTTT TERM 163 115834 - 115869 + H 100 -12.1 -3.98842 | opp_overlap 115830 115834, overlap 115824 TATTTTATATATAAA TTAACATCAGTTCCC AATTTA GCGAACTGATGTTAA TTTATGAATATTATC TERM 164 115869 - 115834 - H 100 -12.2 -4.13246 | gap 1, opp_overlap 115834 115824, overlap 115830 TATTTTATATATAAA TTAACATCAGTTC-CCA ATT TAGCGAACTGATGTTAA TTTATGAATATTATC CLK_A0132 116064 - 116465 + | transposase TERM 165 116465 - 116455 - f 82 -5.4 -5.46698 | TTGAAAATCAAAAAA CTAG ATA CTAG AAAGTGAGGTGAATA TERM 166 117640 - 117628 - g 90 -4.9 -5.79588 | GTAAAAGGAAAAAAA GATTT GGT AAATC ACTAGCAAATAAAGC CLK_A0133 116484 - 118004 + | putative IS transposase TERM 167 118164 - 118143 - T 73 -7.9 -3.70109 | opp_overlap 118143 118143, overlap 118144 TATAGTACCTAAGAA CCCCATGCC TTTA GGCTTGGGA GTTTCAGCATCTAGT TERM 168 118163 - 118144 - T 76 -9.2 -2.81584 | opp_overlap 118143 118143, overlap 118143 ATAGTACCTAAGAAC CCCATGCC TTTA GGCTTGGG AGTTTCAGCATCTAG TERM 169 118244 - 118205 - T 83 -6.1 -5.41143 | gap 1, opp_overlap 118209 118210, overlap 118207 118210 TACTTTTTAAAAAAA TAGAAGAACTATCTTAAT ATAAA ACTAAGATAGTTCCT-TA TGTTTAAATAAAATT TERM 170 118243 - 118207 - T 73 -6.8 -4.34482 | opp_overlap 118209 118210, overlap 118205 118210 CTTTTTAAAAAAATA GAAGAACTATCTTAAT ATAAA ACTAAGATAGTTCCTT ATGTTTAAATAAAAT TERM 171 118240 - 118210 - T 95 -10.7 -4.2757 | opp_overlap 118209 118210, overlap 118207 118205 TTTAAAAAAATAGAA GAACTATCTTAAT ATAAA ACTAAGATAGTTC CTTATGTTTAAATAA CLK_A0134 119051 - 118479 - | hypothetical protein CLK_A0135 119540 - 119115 - | hypothetical protein CLK_A0136 120016 - 119552 - | hypothetical protein TERM 172 120162 - 120127 - R 86 -4.3 -5.93252 | CTCAAAAATAAAAAA GAAAGTAAATTAT TACATTAAAT ATAATTTACTTCC CATTGAAATTGATAT CLK_A0137 121763 - 120177 - | hypothetical protein TERM 173 120227 - 120237 + g 72 -2.6 -5.48054 | opp_overlap 120212, overlap 120212 TAATAAATTCAACTT TATT ATT AATA TTTTTTGCTTTTGCT TERM 174 120442 - 120462 + g 72 -6.3 -4.35044 | ACTTCTGCACTATTA GTATAATAA TCC TTGTTATAC TTTGTCTTTCCATAA TERM 175 122000 - 121959 - R 75 -9 -3.12909 | opp_overlap 121964, overlap 121964 TAAATACACAAATGA TAAAAGTAGCAAGACT ATTTAATTTA AGTCTTGCTACTTTTT TTAACTGTTTAAAGT TERM 176 121995 - 121964 - R 89 -8.9 -4.6575 | opp_overlap 121964, overlap 121959 ACACAAATGATAAAA GTAGCAAGACT ATTTAATTTA AGTCTTGCTAC TTTTTTTAACTGTTT TERM 177 121964 - 121995 + r 100 -8.9 -5.54264 | opp_overlap 121959 121964 ACACAAATGATAAAA GTAGCAAGACT ATTTAATTTA AGTCTTGCTAC TTTTTTTAACTGTTT CLK_A0138 122291 - 122028 - | hypothetical protein TERM 178 122596 - 122624 + r 100 -7.5 -5.50925 | opp_overlap 122596 CAGCATAAATAAAAA GAGCATGTGTT TTGAATT AACACCTGCTC TTTTTTATATTCATT TERM 179 122624 - 122596 - R 100 -7.5 -5.40464 | opp_overlap 122596 CAGCATAAATAAAAA GAGCATGTGTT TTGAATT AACACCTGCTC TTTTTTATATTCATT CLK_A0139 123678 - 122716 - | SPFH domain-containing protein/band 7 family protein TERM 180 123784 - 123758 - R 90 -6.7 -5.79595 | opp_overlap 123761 TTGTAAAATAAAAAA GAATTGGGATT TTTTC AATTCCAATTC TTAAAGGTTTTTTAT CLK_A0140 124029 - 123796 - | hypothetical protein CLK_A0141 124689 - 124105 - | hypothetical protein TERM 181 124884 - 124841 - H 100 -13.4 -5.9362 | opp_overlap 124846 TAAAATATAAAAAAA GAAAAGGTAGAAAGACTTTG AACA CATAGTCTTCCTACCTTTTT CTTTTAACTATATTA TERM 182 124846 - 124879 + H 100 -11.1 -5.48213 | opp_overlap 124841 TATAAAAAAAGAAAA GGTAGAAAGACTTTG AACA CATAGTCTTCCTACC TTTTTCTTTTAACTA TERM 183 125475 - 125455 - g 71 -3.3 -5.33866 | overlap 125456 TAAATTTATAAAAAA CCAGCAACA ATT TATTACTGA GTTAGTATCAATAAA cas 125093 - 125824 + | CRISPR-associated protein Cas6 CLK_A0143 125851 - 127752 + | hypothetical protein CLK_A0144 127773 - 128708 + | hypothetical protein TERM 184 129020 - 129006 - g 72 -5 -4.7657 | TAAAAACTTTAAAAA TTAGCA TAG TGCCAA AGAGTAAAACAGGAT cas5h 128798 - 129559 + | CRISPR-associated protein Cas5, hmari subtype TERM 185 130118 - 130093 - f 82 -4.2 -5.7946 | opp_overlap 130106 TTTTTAATAAAAAAA TACATTTAAC TTCTAC ATTAAATGTA TTTAAACACGCATAT TERM 186 130612 - 130590 - f 73 -2.8 -5.69068 | opp_overlap 130592, overlap 130592 GAAAAACACAAAAAA GATATAAGAA TTT TTCCTATATG TTTAACTTCTGCATT CLK_A0146 130695 - 131033 + | hypothetical protein TERM 187 131049 - 131039 - f 73 -2.6 -5.65177 | AGATTTATAAAAAAA TAAA ACA TTTA ACTTTTACATTAGAT CLK_A0147 131839 - 131976 + | hypothetical protein CLK_A0148 133093 - 133437 + | hypothetical protein TERM 188 133443 - 133476 + T 100 -15.7 -5.47159 | opp_overlap 133443 ACTTACGTAGAAAAA CTCTCTATATATAAT TCAA ATTATATATAGAGAG TTTTTTCTATTAAAC TERM 189 133476 - 133443 - T 100 -15.7 -4.88067 | opp_overlap 133443 ACTTACGTAGAAAAA CTCTCTATATATAAT TCAA ATTATATATAGAGAG TTTTTTCTATTAAAC CLK_A0149 134136 - 133492 - | hypothetical protein CLK_A0150 134388 - 134155 - | hypothetical protein TERM 190 134262 - 134276 + g 88 -5.8 -5.56568 | opp_overlap 134264, overlap 134247 134245 TAGCTGCATTTAATG TAGATA TAA TATCTA TTTTTTTAATAATAT TERM 191 134505 - 134466 - R 100 -17 -6.13503 | opp_overlap 134469 134473 TATTAACAAAAAAAA TAAGAAACTTTATTTAAA AATT TTTAAATAAAGTTTCTTA TTAAGCCATATTAAA TERM 192 134469 - 134502 + r 100 -14.3 -3.63341 | opp_overlap 134466, overlap 134473 TAACAAAAAAAATAA GAAACTTTATTTAAA AATT TTTAAATAAAGTTTC TTATTAAGCCATATT TERM 193 134473 - 134498 + r 93 -9.3 -4.44667 | opp_overlap 134466, overlap 134469 AAAAAAAATAAGAAA CTTTATTTAAA AATT TTTAAATAAAG TTTCTTATTAAGCCA ssb 134970 - 134524 - | single-strand binding protein CLK_A0152 136084 - 135056 - | cell wall-associated hydrolase TERM 194 135939 - 135958 + g 72 -6.6 -4.17698 | opp_overlap 135939 AATTTGATAGTTAAA TTAGATAA ATCA TTATCTAA TTTCTGTATCTCAAT CLK_A0153 136165 - 136350 + | hypothetical protein TERM 195 136378 - 136348 - T 82 -9.2 -3.36299 | opp_overlap 136348 136351, overlap 136343 136351 ATAGAAATAATTCAA TAATACAGATGAGT AAA ATCCATCTGTATTA TTTCAATCTCTTTAT TERM 196 136348 - 136378 + T 84 -9.2 -3.79565 | opp_overlap 136343 136348 136351, overlap 136351 ATAGAAATAATTCAA TAATACAGATGAGT AAA ATCCATCTGTATTA TTTCAATCTCTTTAT CLK_A0154 136768 - 136376 - | hypothetical protein TERM 197 136542 - 136556 + g 79 -5.8 -5.10933 | opp_overlap 136541 TCATTATCATTAATT CTTAAA TCA TTTAAG TTTTCTTTTAAATGG CLK_A0155 136930 - 136790 - | hypothetical protein CLK_A0156 137475 - 137020 - | hypothetical protein CLK_A0157 137607 - 138197 + | GGDEF/GAF/HDIG domain-containing protein TERM 198 138316 - 138275 - T 95 -8.1 -5.1523 | opp_overlap 138275 138277 CTTATAATATAAAAA GAGCAACAGCACTTATGAC TTTA ATCATGAGTATTGTTGCCC TTTTACCTTTATTGG TERM 199 138275 - 138316 + T 77 -7.4 -4.42851 | opp_overlap 138275, overlap 138277 CTTATAATATAAAAA GAGCAACAGCACTTATGA CTTTAA TCATGAGTATTGTTGCCC TTTTACCTTTATTGG dnaX 139740 - 138325 - | DNA polymerase III, subunits gamma and tau TERM 200 138941 - 138986 + g 71 -7.9 -3.43925 | gap 1, opp_overlap 138980, overlap 138939 138945 138980 TGATTTGCATCTTTT TTAT-TCTGCATTACAGCTT TATTTAT ATGCTGTAATGCAGATATAG TATCTTTCTTAATAA TERM 201 138945 - 138981 + g 100 -12.5 -2.96546 | opp_overlap 138980, overlap 138941 138939 138980 TTGCATCTTTTTTAT TCTGCATTACAGCTT TATTTAT ATGCTGTAATGCAGA TATAGTATCTTTCTT TERM 202 139275 - 139299 + g 70 -8.6 -2.66787 | opp_overlap 139275 139274 139272, overlap 139279 ATAATACAGTAATAG GCAACTTCTG TGGAT CAGTAGTTGC TAATATAAATATTAC TERM 203 139299 - 139275 - G 70 -8.6 -2.55205 | opp_overlap 139275 139279, overlap 139274 139272 ATAATACAGTAATAG GCAACTTCTG TGGAT CAGTAGTTGC TAATATAAATATTAC TERM 204 139850 - 139820 - R 100 -16.4 -4.28049 | opp_overlap 139820 TTCAAAATTTTAAAA TACCTTAACAGCAC TTA GTACTGTTAAGGTA TTTTTTCTTAGATAT TERM 205 139820 - 139850 + r 100 -14.2 -5.49234 | opp_overlap 139820 TTCAAAATTTTAAAA TACCTTAACAGCAC TTA GTACTGTTAAGGTA TTTTTTCTTAGATAT CLK_A0159 140051 - 139824 - | hypothetical protein CLK_A0160 140209 - 140066 - | hypothetical protein holA 141242 - 140259 - | DNA polymerase III, delta subunit TERM 206 141185 - 141210 + g 80 -7 -4.70107 | opp_overlap 141173 AAGCTGTTACATTAT CAGTGATAAG TAAAAT CTTATTACTG TTTATTGTTTTAATA CLK_A0162 141821 - 141261 - | hypothetical protein TERM 207 141475 - 141505 + g 93 -5 -6.09196 | gap 1, overlap 141478 TCATTAGTAATTTCT CTCCATAATTCTT TTTTAT AAGAATTATG-AG TTTTTTTATTTTCCC TERM 208 141924 - 141899 - R 100 -11.3 -6.09196 | opp_overlap 141899 TCCAAAATAAAAAAA GTTGCGGTTAT TCCA ATAACCACAAC TTTATATATACTTTT TERM 209 141899 - 141924 + r 84 -9.1 -4.19927 | opp_overlap 141899 TCCAAAATAAAAAAA GTTGCGGTTAT TCCA ATAACCACAAC TTTATATATACTTTT CLK_A0163 142158 - 141967 - | hypothetical protein TERM 210 142712 - 142676 - H 100 -14.1 -5.9663 | opp_overlap 142676 AAACAGTAAAAAAAA GAGTAACAAGATATT ATGTTTA AATATCTTGTTACTC TTTTTATGAACAACA TERM 211 142676 - 142712 + H 100 -14.1 -4.82901 | opp_overlap 142676 AAACAGTAAAAAAAA GAGTAACAAGATATT ATGTTTA AATATCTTGTTACTC TTTTTATGAACAACA CLK_A0164 142759 - 142875 + | hypothetical protein TERM 212 143039 - 143062 + T 74 -6 -4.56597 | opp_overlap 143032 143039 143057 143060 TGAAAATAGCAACAA CACTCGTGAC CTTA GTAATGAGTG TTTTTACACACAAAC CLK_A0165 144388 - 143066 - | hypothetical protein TERM 213 143121 - 143138 + g 74 -8.5 -3.60234 | AGTAACTCTACTTTA GGAACTT TTTT AAGTTCC TTTAAAGCTATATAC TERM 214 143607 - 143619 + g 74 -3.4 -5.49568 | opp_overlap 143607 ATTGACATAAACGTA GCTT CTTTA AAGC TTTTTATTTTAGGTT TERM 215 144636 - 144655 + r 74 -8.6 -3.36785 | opp_overlap 144635 144636 GATTGCTCCTACAAG CCTACGAA TTTA TTCGTGGG TTAGTTGACATATGG CLK_A0166 144877 - 144656 - | hypothetical protein TERM 216 144932 - 144911 - R 100 -10.3 -5.24129 | opp_overlap 144911 TCTCTTTATAAAAAA TGCTAAGTT AATT AACTTAGCA TTTACTTATGTCTAT TERM 217 144911 - 144932 + r 95 -10.3 -4.06964 | opp_overlap 144911 TCTCTTTATAAAAAA TGCTAAGTT AATT AACTTAGCA TTTACTTATGTCTAT CLK_A0167 145197 - 145006 - | hypothetical protein CLK_A0168 145599 - 145399 - | hypothetical protein CLK_A0169 145812 - 145654 - | hypothetical protein TERM 218 145733 - 145743 + g 80 -6.8 -4.76274 | CATCTACAGTTTTGA CAGC TAG GCTG TTTTGTATTAGTTTC CLK_A0170 146032 - 145862 - | hypothetical protein TERM 219 145935 - 145911 - G 71 -7.3 -3.79678 | opp_overlap 145910 145911 145924 AATCCTCCACAACAA TCTATAATTAC ATG GTCATTATAGA CCTTTTCTGTATTCC CLK_A0171 146371 - 146108 - | hypothetical protein CLK_A0172 146609 - 146421 - | PhnB protein TERM 220 146792 - 146771 - R 95 -10.3 -4.30719 | opp_overlap 146771 TTTTTTTATAAGAAA TGCTAAGTT AATT AACTTAGCA TTTAGTTTAATCATC TERM 221 146771 - 146792 + r 95 -10.3 -4.11623 | opp_overlap 146771 TTTTTTTATAAGAAA TGCTAAGTT AATT AACTTAGCA TTTAGTTTAATCATC CLK_A0173 147038 - 146799 - | hypothetical protein CLK_A0174 147315 - 147202 - | hypothetical protein CLK_A0175 147974 - 147405 - | hypothetical protein TERM 222 148029 - 148041 + r 72 -7.7 -3.58802 | opp_overlap 148026 148029 GTTTCATTAGAAGTA GCAGT ATT ACTGC TTCTATAATCCTTTA CLK_A0176 148283 - 148086 - | hypothetical protein CLK_A0177 148782 - 148423 - | hypothetical protein TERM 223 148886 - 148867 - R 90 -5.8 -5.95539 | opp_overlap 148867 TGCGAAATAAAAAAA TCAGATAT AAAA ATACCTGA TTTAATATTCTAAGT CLK_A0178 149171 - 148896 - | hypothetical protein TERM 224 149303 - 149326 + r 72 -6.2 -4.48175 | opp_overlap 149303 TATAATATATAAGGA GTTGTAAATT TTTA AATTTATAAC TTTTCCTTAAATTTT TERM 225 149357 - 149389 + r 100 -12.3 -5.84432 | opp_overlap 149357 149361 AGCTTAAAGCCATAA GAAAGAGTATTTATA TAT TATCAATACTCTTTC TTTTTTTATATTATA TERM 226 149389 - 149357 - R 95 -12.3 -3.47617 | opp_overlap 149357, overlap 149361 AGCTTAAAGCCATAA GAAAGAGTATTTATA TAT TATCAATACTCTTTC TTTTTTTATATTATA TERM 227 149385 - 149361 - R 75 -7.3 -4.37211 | opp_overlap 149357, overlap 149357 TAAAGCCATAAGAAA GAGTATTTATA TAT TATCAATACTC TTTCTTTTTTTATAT CLK_A0179 149583 - 149422 - | hypothetical protein TERM 228 149523 - 149560 + g 100 -8.7 -5.43974 | opp_overlap 149523 CCATCAAATGAAAAA TAAGGTACCATATATAA TTAT TTACATATAGTACCTTA TTTTTATTTGCTTTT TERM 229 149560 - 149523 - G 100 -13.1 -5.01811 | opp_overlap 149523 CCATCAAATGAAAAA TAAGGTACCATATATAA TTAT TTACATATAGTACCTTA TTTTTATTTGCTTTT CLK_A0180 149917 - 149564 - | hypothetical protein CLK_A0181 150572 - 149937 - | phage protein TERM 230 150237 - 150266 + g 75 -7.4 -4.09108 | opp_overlap 150236 TTTATTTATATAATC TTTTGTGTAAAA ATAATC TTTTGCACAAAA TTTATGTCCGTTAAA TERM 231 150817 - 150858 + r 93 -9.5 -4.40894 | opp_overlap 150820, overlap 150820 TTATCCATCCATACA AAAGGGGCTTGCGACTAAA ATTA TGTAGTCACAAGTCCCTTA TTTTAATATAATTTC TERM 232 150820 - 150855 + r 100 -11.2 -4.29905 | opp_overlap 150820, overlap 150817 TCCATCCATACAAAA GGGGCTTGCGACTAAA ATTA TGTAGTCACAAGTCCC TTATTTTAATATAAT TERM 233 150855 - 150820 - R 100 -11.2 -4.55287 | opp_overlap 150817 150820 TCCATCCATACAAAA GGGGCTTGCGACTAAA ATTA TGTAGTCACAAGTCCC TTATTTTAATATAAT CLK_A0182 152433 - 150904 - | TPR repeat-containing protein CLK_A0183 153953 - 152544 - | HD domain-containing protein CLK_A0184 154233 - 154096 - | hypothetical protein TERM 234 154288 - 154252 - R 93 -10.2 -4.12532 | opp_overlap 154249 CCCTCCACATATAAA GGGACTTGCAACTAAA ATACA TATAGCTGCAGGTCCC TAATCATTATTCTAT CLK_A0185 154888 - 154295 - | putative guanylate kinase CLK_A0186 155136 - 154909 - | hypothetical protein TERM 235 154996 - 155025 + g 80 -2.3 -5.73339 | ATTACCTTGTAATTC TATAGTTAATTTA TAAT TAAACCAACTATA TTTTTTTATAATTAT TERM 236 155385 - 155354 - R 73 -3.2 -5.47431 | gap 1 TTAATATACAAAAAA CTAGGTATCCTTA TATAGAT TAAAGA-ACCTAG TTTTAGATATTATTT TERM 237 155511 - 155482 - R 100 -8.7 -5.64274 | opp_overlap 155482 TTATTTATAAAAAAA TAAAGCGATGCAG TTAA CTACACCACTTTA TTTTTATTATTATTT CLK_A0187 156174 - 155521 - | hypothetical protein CLK_A0188 156989 - 156234 - | hypothetical protein TERM 238 156475 - 156494 + g 89 -6.6 -5.37865 | opp_overlap 156473 156475 TCCTGAGCATTAATA GAAAATAA GATT TTATTTTC TTTTTTACTTCTTAC CLK_A0189 157291 - 157169 - | hypothetical protein TERM 239 157437 - 157493 + r 95 -10 -4.32882 | gap 1, opp_overlap 157443 157447 157450, overlap 157437 157439 157440 TATTCCTCCATTTTC TAA-TTATAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTATAAATTC TATTTTATTTTTTAA TERM 240 157439 - 157490 + r 100 -14.2 -4.1922 | opp_overlap 157443 157447 157450, overlap 157437 157437 157440 TTCCTCCATTTTCTA ATTATAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTATAAA TTCTATTTTATTTTT TERM 241 157440 - 157489 + r 100 -17.7 -3.07871 | opp_overlap 157443 157447 157450, overlap 157439 157437 157437 TCCTCCATTTTCTAA TTATAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTATAA ATTCTATTTTATTTT TERM 242 157486 - 157443 - R 90 -12.8 -2.71731 | opp_overlap 157440 157439 157437 157437, overlap 157447 157450 TCCATTTTCTAATTA TAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTA TAAATTCTATTTTAT TERM 243 157482 - 157447 - R 86 -9.2 -4.05446 | opp_overlap 157440 157439 157437 157437, overlap 157443 157450 TTTTCTAATTATAAA GAAGGTGTTATATC ATTTCGCA GATATAGCACCTTC TTTATAAATTCTATT CLK_A0190 158576 - 157509 - | DNA modification methylase TERM 244 158285 - 158318 + g 73 -5.5 -4.64676 | opp_overlap 158289 158306, overlap 158287 158289 CTAGCATAGGATCAC AAAATTCTTTTACAT TATA ATGTAAAAGAATATC TTTTATTAGAAGTCC TERM 245 158287 - 158316 + g 79 -8.1 -3.93768 | opp_overlap 158289 158306, overlap 158285 158289 AGCATAGGATCACAA AATTCTTTTACAT TATA ATGTAAAAGAATA TCTTTTATTAGAAGT TERM 246 158289 - 158314 + g 90 -10.7 -3.55261 | opp_overlap 158289 158306, overlap 158287 158285 CATAGGATCACAAAA TTCTTTTACAT TATA ATGTAAAAGAA TATCTTTTATTAGAA TERM 247 158314 - 158289 - G 100 -10.7 -4.49981 | opp_overlap 158287 158285 158289, overlap 158306 CATAGGATCACAAAA TTCTTTTACAT TATA ATGTAAAAGAA TATCTTTTATTAGAA TERM 248 158674 - 158699 + r 73 -7 -4.17274 | opp_overlap 158674, overlap 158669 ATATATATTAAAAAA GCATAAAGGT AATAAA ATCTTTATGC TTTAATTCTTTCGTT TERM 249 158699 - 158674 - R 74 -4.8 -5.25893 | opp_overlap 158674 158669 ATATATATTAAAAAA GCATAAAGGT AATAAA ATCTTTATGC TTTAATTCTTTCGTT CLK_A0191 160118 - 158694 - | DNA primase TERM 250 159712 - 159683 - G 72 -8.1 -3.35775 | opp_overlap 159684, overlap 159681 159684 AGCAGCTTGTAAATA TTTCATATACTTT ATTT AAAGTATATGAAT TTGCTTTAATGCTCT TERM 251 159711 - 159684 - G 85 -11.6 -2.61144 | opp_overlap 159684, overlap 159683 159681 GCAGCTTGTAAATAT TTCATATACTTT ATTT AAAGTATATGAA TTTGCTTTAATGCTC TERM 252 159684 - 159711 + g 100 -11.6 -4.11623 | opp_overlap 159683 159681 159684 GCAGCTTGTAAATAT TTCATATACTTT ATTT AAAGTATATGAA TTTGCTTTAATGCTC TERM 253 160327 - 160364 + H 75 -7.3 -4.21989 | opp_overlap 160360 ACAAATCGACCTGAA TGTTATATATTTATAAC ATAA GATAAAAATATATAACA TTTGTTAAAATTATA CLK_A0192 160398 - 160790 + | hypothetical protein CLK_A0193 160792 - 161004 + | hypothetical protein TERM 254 161153 - 161121 - T 100 -12.3 -5.62288 | opp_overlap 161116 161121 TTAAGAAAACAAAAA GTGATAATTAGATAT TTG ATACCTAACTATCAC TTTCATATTTTTTAT TERM 255 161121 - 161153 + T 78 -7.9 -4.20024 | opp_overlap 161121, overlap 161116 TTAAGAAAACAAAAA GTGATAATTAGATAT TTG ATACCTAACTATCAC TTTCATATTTTTTAT CLK_A0194 161509 - 161192 - | hypothetical protein TERM 256 161706 - 161720 + r 74 -8.6 -3.46965 | AACATATTTAATTGC TCACAG TAT CTGTGA TTATCCTCCTATGTT CLK_A0195 162200 - 161763 - | phage protein CLK_A0196 162533 - 162261 - | hypothetical protein CLK_A0197 162897 - 162616 - | hypothetical protein CLK_A0198 163323 - 162976 - | hypothetical protein TERM 257 163121 - 163134 + g 81 -2.5 -5.80003 | opp_overlap 163121 163131, overlap 163131 GATTCATCTTCAAGA TTTAT ATAC ATAAA TTTTTTATTTATTCC TERM 258 163494 - 163521 + r 77 -8.8 -3.39439 | opp_overlap 163494, overlap 163492 163490 TATATTTTATCCAAA TTTAAAAATATT CCAT AATATTTTTAAA TATATTATTATTTAT TERM 259 163521 - 163494 - R 79 -8.8 -3.66378 | opp_overlap 163492 163490 163494 TATATTTTATCCAAA TTTAAAAATATT CCAT AATATTTTTAAA TATATTATTATTTAT CLK_A0199 163828 - 163529 - | putative sodium/alanine symporter family protein TERM 260 164089 - 164061 - R 77 -7.6 -4.07568 | opp_overlap 164060 164055 164061 164076 CTCCTTCTTTTAAAA TCCTATAAGC TTGTGTAGT GCTTATAGGA CTATTAATTCCTTTT CLK_A0200 164539 - 164342 - | hypothetical protein CLK_A0201 165124 - 164660 - | hypothetical protein CLK_A0202 165839 - 165363 - | hypothetical protein CLK_A0203 166780 - 165926 - | modification methylase CLK_A0204 166949 - 166785 - | hypothetical protein CLK_A0205 167987 - 167172 - | hypothetical protein CLK_A0206 168444 - 168073 - | hypothetical protein CLK_A0207 169501 - 168593 - | hypothetical protein TERM 261 168730 - 168742 + g 71 -2 -5.48303 | CTTGAAATAATTTTT TTGA TTTTT TCAA TTTTTTTAAGATTAT CLK_A0208 169919 - 169704 - | hypothetical protein CLK_A0209 170296 - 170006 - | hypothetical protein CLK_A0210 170500 - 170324 - | hypothetical protein CLK_A0211 171131 - 170511 - | ATPase TERM 262 171147 - 171193 + r 80 -8.2 -4.2142 | opp_overlap 171152 171160, overlap 171152 TCTAAACATCCCCTT CACAATTCCACAATTCATAGAT CTA ATCTTTGAATTGTGGAATTAAA TTATTTTCAACTGTT TERM 263 171152 - 171188 + r 100 -16.9 -3.37556 | opp_overlap 171152 171160, overlap 171147 ACATCCCCTTCACAA TTCCACAATTCATAGAT CTA ATCTTTGAATTGTGGAA TTAAATTATTTTCAA TERM 264 171188 - 171152 - R 100 -16.9 -3.29263 | opp_overlap 171152 171147, overlap 171160 ACATCCCCTTCACAA TTCCACAATTCATAGAT CTA ATCTTTGAATTGTGGAA TTAAATTATTTTCAA CLK_A0212 171953 - 171189 - | DNA methylase CLK_A0213 172451 - 171984 - | hypothetical protein CLK_A0214 172870 - 172514 - | hypothetical protein CLK_A0215 173116 - 172931 - | hypothetical protein CLK_A0216 173300 - 173133 - | hypothetical protein CLK_A0217 173548 - 173336 - | hypothetical protein TERM 265 173677 - 173718 + r 83 -7.6 -4.59342 | opp_overlap 173666 173682, overlap 173682 ATAATTTTTATTATA AAAAACACTAGTAAATTT AATATA AAATTTACTAGTGTTGTA TTTCTTTATGATAAA TERM 266 173682 - 173713 + r 100 -11.9 -4.05321 | opp_overlap 173682, overlap 173677 TTTTATTATAAAAAA CACTAGTAAATTT AATATA AAATTTACTAGTG TTGTATTTCTTTATG TERM 267 173713 - 173682 - R 100 -11.9 -5.31275 | opp_overlap 173682 173677 TTTTATTATAAAAAA CACTAGTAAATTT AATATA AAATTTACTAGTG TTGTATTTCTTTATG TERM 268 173792 - 173825 + r 77 -7.7 -4.18018 | overlap 173790 173793 ATACTGTCACTTATA TCATTGATAGTATTA ATCA TAGTATTATCAATGG TTTTACCTAAACAAA TERM 269 173793 - 173824 + r 74 -9 -3.10597 | overlap 173790 173792 TACTGTCACTTATAT CATTGATAGTATTA ATCA TAGTATTATCAATG GTTTTACCTAAACAA TERM 270 173955 - 173922 - R 100 -7 -6.07374 | ACAAAAAATAAAAAA GTGTAAATACAT ACCTTCACAA ATGTATTTACAC TTAAACTGAGAAATA CLK_A0218 175615 - 174194 - | flagellin TERM 271 174493 - 174465 - G 72 -7.7 -3.54771 | opp_overlap 174457 174465 174468 174492, overlap 174466 174492 TCTATAATATTAGAA CCATTTAATATAT CTG ATATATCAAATGA ATTATATTCTTCATC TERM 272 174492 - 174466 - G 70 -9 -2.72381 | opp_overlap 174457 174465 174468, overlap 174465 CTATAATATTAGAAC CATTTAATATAT CTG ATATATCAAATG AATTATATTCTTCAT TERM 273 175724 - 175703 - R 100 -7.5 -5.60993 | opp_overlap 175702 175707 TTTTTTATAAAAAAA TAAAGTAAT TTAA ATTACTTTA CTTAAATAAGTCTTA CLK_A0219 175854 - 175726 - | hypothetical protein TERM 274 177151 - 177163 + G 72 -7.7 -3.56864 | overlap 177147 177149 CAGATAATACTTCTG GCATC CCT GATGC TGTTTATGGGATTTT CLK_A0220 176133 - 177617 + | hypothetical protein TERM 275 177630 - 177658 + F 100 -9.6 -5.60993 | opp_overlap 177630 TAAATAATTACCAAA TACTCCCCTACC TATCT GGTGTGGGAGTA TTTTTTTATAAAGAA TERM 276 177658 - 177630 - f 71 -7.4 -3.90738 | opp_overlap 177630 TAAATAATTACCAAA TACTCCCCTACC TATCT GGTGTGGGAGTA TTTTTTTATAAAGAA TERM 277 178103 - 178137 + F 84 -5 -5.70829 | opp_overlap 178103 ACTAGTGATTATATA GTGTTCTAAAAAAGTG TTT CACTTTTGTCGTGCAC TTTTTTTATAATATT TERM 278 178208 - 178225 + F 77 -7.1 -4.52143 | ACTTTTGTCGTGCAC TTTTGTC ATTA GACAAAA TTTATTCTATTTGCA TERM 279 178509 - 178497 - g 85 -3.5 -5.68039 | AAAGTCATAAAAAAA TATAA CAT TTATA GTAACATAAATATTG CLK_A0221 178290 - 179327 + | hypothetical protein TERM 280 179823 - 179766 - T 100 -15.3 -4.67982 | opp_overlap 179775 179777, overlap 179769 179775 TTGCATTTAATAAAA CACTTAAAAGAGGCTGTAATTTAGTTT ATAA AAACTAAATTACAGCCCCTTTTATAAA ACTAACTTAAAATCA TERM 281 179820 - 179769 - T 100 -21.4 -2.96609 | opp_overlap 179775 179777, overlap 179766 179775 CATTTAATAAAACAC TTAAAAGAGGCTGTAATTTAGTTT ATAA AAACTAAATTACAGCCCCTTTTAT AAAACTAACTTAAAA TERM 282 179814 - 179775 - T 100 -20.4 -4.36485 | opp_overlap 179775 179777, overlap 179769 179766 ATAAAACACTTAAAA GAGGCTGTAATTTAGTTT ATAA AAACTAAATTACAGCCCC TTTTATAAAACTAAC TERM 283 179775 - 179814 + T 100 -18.2 -4.38712 | opp_overlap 179769 179766 179775, overlap 179777 ATAAAACACTTAAAA GAGGCTGTAATTTAGTTT ATAA AAACTAAATTACAGCCCC TTTTATAAAACTAAC TERM 284 179777 - 179812 + T 100 -19.4 -2.53422 | opp_overlap 179775 179769 179766, overlap 179775 AAAACACTTAAAAGA GGCTGTAATTTAGTTT ATAA AAACTAAATTACAGCC CCTTTTATAAAACTA CLK_A0222 180103 - 179894 - | DNA-directed RNA polymerase subunit alpha spoIIID 180372 - 180124 - | sporulation transcriptional regulator spoiiid TERM 285 180472 - 180448 - R 100 -13.1 -5.69262 | opp_overlap 180448 TTACAAAAATAAAAA CTAGGTATATA TTT TATATACCTAG TTTCACAAATTTATT TERM 286 180448 - 180472 + r 100 -13.1 -3.60475 | opp_overlap 180448 TTACAAAAATAAAAA CTAGGTATATA TTT TATATACCTAG TTTCACAAATTTATT CLK_A0224 180821 - 180483 - | hypothetical protein CLK_A0225 181238 - 181468 + | hypothetical protein TERM 287 181448 - 181505 + T 100 -18.5 -3.80877 | gap 1, opp_overlap 181455 181460, overlap 181455 181460 AAAATTTATTCTATA TTTAAAAGAAAAGACTATTAATGATAAT TTT AATA-CATTAATAGTCTTTTCTTTTAAA TATTTTATAAACTAC TERM 288 181498 - 181455 - T 100 -12.2 -4.23758 | gap 1, opp_overlap 181455 181448 181460, overlap 181460 ATTCTATATTTAAAA GAAAAGACTATTAATG-ATAA TTT TAATACATTAATAGTCTTTTC TTTTAAATATTTTAT TERM 289 181455 - 181498 + T 100 -12.2 -4.36485 | gap 1, opp_overlap 181455 181460, overlap 181448 181460 ATTCTATATTTAAAA GAAAAGACTATTAATGATAAT TTT AATA-CATTAATAGTCTTTTC TTTTAAATATTTTAT TERM 290 181460 - 181493 + T 80 -6.3 -5.11836 | gap 1, opp_overlap 181455 181460, overlap 181455 181448 ATATTTAAAAGAAAA GACTATTAATGATAAT TTT AATA-CATTAATAGTC TTTTCTTTTAAATAT TERM 291 181493 - 181460 - T 80 -6.3 -5.11836 | gap 1, opp_overlap 181460 181455 181448, overlap 181455 ATATTTAAAAGAAAA GACTATTAATG-ATAA TTT TAATACATTAATAGTC TTTTCTTTTAAATAT CLK_A0226 181827 - 181510 - | hypothetical protein TERM 292 181585 - 181602 + g 70 -3.5 -5.06103 | TTTACTTGATTGATT GTTTTTA TTAA TAGAAAC TTTTTTAGGAGTTGT CLK_A0227 182872 - 181805 - | hypothetical protein TERM 293 182703 - 182717 + g 71 -5.8 -4.39989 | opp_overlap 182705 AAATATTTACCATTA TACTTT ATT AAAGTA TTTTCATCATTTAAT TERM 294 183023 - 182983 - R 77 -6.5 -4.59117 | opp_overlap 182989, overlap 183021 AAATCAATGATAAAA CAATTATAAAACATTTAAA GTT TTTTTATGTTTTATAATTA AAATAATAATATTTT TERM 295 183121 - 183081 - R 81 -7.9 -4.51699 | opp_overlap 183089, overlap 183083 183089 ATAATGATTATAAAA CATAAAAACACAATATAAA TAC TTTATAATGTGTTTTAATA AGTAAAAATAGATTT TERM 296 183119 - 183083 - R 78 -8.3 -3.85857 | opp_overlap 183089, overlap 183081 183089 AATGATTATAAAACA TAAAAACACAATATAAA TAC TTTATAATGTGTTTTAA TAAGTAAAAATAGAT TERM 297 183089 - 183113 + r 75 -7.3 -4.2828 | opp_overlap 183083 183081 183089 TATAAAACATAAAAA CACAATATAAA TAC TTTATAATGTG TTTTAATAAGTAAAA TERM 298 183113 - 183089 - R 90 -7.3 -5.32599 | opp_overlap 183089, overlap 183083 183081 TATAAAACATAAAAA CACAATATAAA TAC TTTATAATGTG TTTTAATAAGTAAAA TERM 299 183216 - 183248 + r 79 -5 -5.45802 | opp_overlap 183217, overlap 183217 TAAAAACTTTAAAAA ACTGCTACATTTAT CATTT ATAAATGTAACAGC TTTTTGTTTTAAGAG TERM 300 183217 - 183247 + r 78 -8.5 -3.86397 | opp_overlap 183217, overlap 183216 AAAAACTTTAAAAAA CTGCTACATTTAT CATTT ATAAATGTAACAG CTTTTTGTTTTAAGA TERM 301 183247 - 183217 - R 100 -10.7 -5.16472 | opp_overlap 183217 183216 AAAAACTTTAAAAAA CTGCTACATTTAT CATTT ATAAATGTAACAG CTTTTTGTTTTAAGA CLK_A0228 184066 - 183257 - | hypothetical protein TERM 302 183321 - 183301 - G 70 -6.3 -4.13872 | AGTGAATTACATAAA CTATTATAA TAA TTACAATAG TACAGGATATTACTT TERM 303 184029 - 184065 + g 81 -8.4 -4.2237 | opp_overlap 184039 TTATTCATGATAGTT TGATATTTAATATATA GTTTA TATACATTAAATATCA TTTTGCACTTCCTTT TERM 304 184344 - 184363 + r 75 -9.2 -2.7264 | opp_overlap 184359, overlap 184343 184357 TATTGTGCTATCCAT CCCACACC TAAA GGAGTGGG CTTTCCGCACAGTTT CLK_A0229 185170 - 184505 - | hypothetical protein TERM 305 185093 - 185128 + g 70 -5 -4.66456 | opp_overlap 185088 185102, overlap 185088 185097 185098 185102 ATCTTTTAAATTGTC TATGTTAAACAATATA TCGG TATATTGTTTACTGTA TTTCTCTTTTTCTTT TERM 306 185098 - 185123 + g 73 -9.3 -2.67192 | opp_overlap 185088 185102, overlap 185088 185097 185093 185102 TTAAATTGTCTATGT TAAACAATATA TCGG TATATTGTTTA CTGTATTTCTCTTTT TERM 307 185255 - 185290 + r 100 -10.7 -4.4267 | opp_overlap 185255 AATTCTATAGGAAAA GACACTAATTACCTT ATTAAA AAGCTAATTAGTGTC TTTTAGATTTTAAAA TERM 308 185290 - 185255 - R 95 -10.7 -4.35518 | opp_overlap 185255 AATTCTATAGGAAAA GACACTAATTACCTT ATTAAA AAGCTAATTAGTGTC TTTTAGATTTTAAAA CLK_A0230 186079 - 185327 - | hypothetical protein TERM 309 186147 - 186130 - R 91 -8.5 -5.00616 | opp_overlap 186130 TTGTGTTCTAAAAAA TCCTTCT AAAT AGAAGGA TTTTTTAATTAAGAT TERM 310 186130 - 186147 + r 100 -8.5 -5.27477 | opp_overlap 186130 TTGTGTTCTAAAAAA TCCTTCT AAAT AGAAGGA TTTTTTAATTAAGAT CLK_A0231 186794 - 186156 - | phage shock protein A CLK_A0232 187612 - 186917 - | hypothetical protein TERM 311 187225 - 187239 + g 81 -5.8 -5.20633 | TAATTTCATCAACTT TATCTA AGC TAGATA TTTTTATATATTTTT TERM 312 187453 - 187498 + g 72 -6.5 -4.33302 | gap 1 CTAAAGAAAACAGAT GAATAATGATGTC-GATAAT ATTTCCA ATTATCTGGCATCGTTGTTC TATTTTTATTTCTCT CLK_A0233 188089 - 187928 - | hypothetical protein TERM 313 188132 - 188111 - R 71 -8.1 -3.0263 | opp_overlap 188108 188111 ATCACGCTCCTAATA CTATGTAGC TATA ACTACATAG TGCTTCTATTCCAAT CLK_A0234 188644 - 188138 - | hypothetical protein TERM 314 188502 - 188530 + g 75 -4.6 -5.03284 | TCAGAATCTATTTGG GAAAGCAATTCT TTTAC AGTAATGCTTTC TTTATTTCTTTTTTT TERM 315 188807 - 188768 - R 90 -6.6 -5.8096 | opp_overlap 188768 188806 TATAAAAAATAAAAA GAGAGTAAGCTAAAAATA ATAT TACTCTTAGTTTTCTCTC TTTCTTAGATAGATT CLK_A0235 189278 - 188826 - | hypothetical protein CLK_A0236 189670 - 189323 - | hypothetical protein CLK_A0237 189711 - 189863 + | hypothetical protein CLK_A0238 190650 - 189982 - | serine/threonine protein phosphatase CLK_A0239 190884 - 190702 - | hypothetical protein CLK_A0240 191785 - 191282 - | hypothetical protein TERM 316 191952 - 191975 + r 86 -9.7 -4.15998 | opp_overlap 191952 GAATTGATATGTAAA TGGAGTATC TATTTT GATACTCCA TTATTTGATTTGAAT TERM 317 191975 - 191952 - R 84 -9.7 -3.72588 | opp_overlap 191952 GAATTGATATGTAAA TGGAGTATC TATTTT GATACTCCA TTATTTGATTTGAAT CLK_A0241 192570 - 192061 - | hypothetical protein TERM 318 192538 - 192526 - G 87 -3.5 -5.89827 | AAGTATTAAAAAAAA TAAAA CCC TTTTA CAGCTAGATAATTTT CLK_A0242 193287 - 192979 - | hypothetical protein CLK_A0243 193678 - 193355 - | hypothetical protein CLK_A0244 193933 - 193703 - | hypothetical protein CLK_A0245 194215 - 193994 - | hypothetical protein CLK_A0246 194797 - 194246 - | hypothetical protein CLK_A0247 195498 - 194794 - | hypothetical protein CLK_A0248 195922 - 195560 - | hypothetical protein CLK_A0249 196443 - 195958 - | hypothetical protein TERM 319 196233 - 196217 - G 72 -4.5 -4.87892 | GCCCAATAAAATAAA GATAATA GGC TATCATC ATCCATGTATTCACC CLK_A0250 196814 - 196482 - | hypothetical protein CLK_A0251 197140 - 196880 - | hypothetical protein CLK_A0252 197540 - 197196 - | hypothetical protein TERM 320 197705 - 197721 + r 78 -5.3 -5.25735 | overlap 197711 197712 GCATAAAAATATGTG TTAATTT TAA AAATTAA TTTTTAGTTTTTTGA CLK_A0253 197944 - 197738 - | hypothetical protein TERM 321 198051 - 198008 - R 100 -17 -4.83615 | opp_overlap 198008, overlap 198011 CATTTTTTATAAAAA TAATAGGCTGCTGTATGAGA TTTA TATCATACAGCAGCCTATTG TTTTTATATTTAGAG TERM 322 198008 - 198051 + r 100 -19.2 -5.19879 | opp_overlap 198008 198011 CATTTTTTATAAAAA TAATAGGCTGCTGTATGAGA TTTA TATCATACAGCAGCCTATTG TTTTTATATTTAGAG TERM 323 198048 - 198011 - R 100 -18.7 -4.52873 | opp_overlap 198008, overlap 198008 TTTTTATAAAAATAA TAGGCTGCTGTATGAGA TTTA TATCATACAGCAGCCTA TTGTTTTTATATTTA TERM 324 198113 - 198078 - R 100 -9.8 -5.17353 | opp_overlap 198079, overlap 198079 AGAGGTATCAAAAAA TTTGGAAGATGGGG TTATAATT CCCCATCCTCCAAT TGTTGTAATATGGTG TERM 325 198079 - 198112 + r 100 -11.1 -3.87505 | opp_overlap 198078 198079 GAGGTATCAAAAAAT TTGGAAGATGGGG TTATAATT CCCCATCCTCCAA TTGTTGTAATATGGT TERM 326 198112 - 198079 - R 100 -13.3 -3.69327 | opp_overlap 198079, overlap 198078 GAGGTATCAAAAAAT TTGGAAGATGGGG TTATAATT CCCCATCCTCCAA TTGTTGTAATATGGT CLK_A0254 199390 - 198302 - | amidase domain-containing protein CLK_A0255 199794 - 199471 - | hypothetical protein TERM 327 199902 - 199871 - R 93 -8.8 -4.7373 | opp_overlap 199871, overlap 199859 TTACGGCATGAAAAA CACCGTAAAATTCA GACT TGAATAATACGGTG TTCTAATAAATTATT TERM 328 199871 - 199902 + r 77 -8.8 -3.45434 | opp_overlap 199859 199871 TTACGGCATGAAAAA CACCGTAAAATTCA GACT TGAATAATACGGTG TTCTAATAAATTATT CLK_A0256 200620 - 199916 - | hypothetical protein CLK_A0257 201067 - 200774 - | hypothetical protein TERM 329 201232 - 201206 - R 100 -7.5 -5.46629 | opp_overlap 201206 201209 AATATTGCAAAAAAA TAATACCTATA ATTTA TATAGGTATCA TTTTTGCATATATAA TERM 330 201206 - 201232 + r 71 -5.3 -4.72846 | opp_overlap 201206, overlap 201209 AATATTGCAAAAAAA TAATACCTATA ATTTA TATAGGTATCA TTTTTGCATATATAA CLK_A0258 202277 - 201252 - | hypothetical protein CLK_A0259 202708 - 202382 - | hypothetical protein CLK_A0260 203226 - 202837 - | hypothetical protein CLK_A0261 203584 - 203279 - | hypothetical protein CLK_A0262 203836 - 203651 - | hypothetical protein CLK_A0263 204086 - 203907 - | hypothetical protein CLK_A0264 204354 - 204136 - | hypothetical protein CLK_A0265 204998 - 204462 - | phage protein CLK_A0266 205522 - 205061 - | hypothetical protein CLK_A0267 206418 - 205627 - | hypothetical protein CLK_A0268 206973 - 206518 - | hypothetical protein TERM 331 207093 - 207069 - R 93 -6.5 -5.93252 | opp_overlap 207069 TTTAAAAACAAAAAA CAGGAAAATTA ATT TCATTTTCCCG TGTTCTTATATTTTA TERM 332 207222 - 207198 - R 80 -9.4 -3.28791 | gap 1 ATTTCTTTTGGATAA CCGACAAATGC TAAA GCATT-GTCGG TTGACACCAATCACT TERM 333 207343 - 207377 + r 100 -10.2 -4.88687 | overlap 207336 CGTATGCCCCTAAGT TTAAGTAGTTTAGGTT ATA GACCTATGCTACTTAA TTGTTTTTTATTTAA CLK_A0269 208799 - 207357 - | putative IS transposase TERM 334 207712 - 207724 + g 71 -4.9 -4.84492 | GCTTTATTACCAAGC GATTT ACC AAATC TTTTCTTATGATTAA CLK_A0270 208952 - 208824 - | ISCpe2, transposase OrfA TERM 335 209060 - 209074 + r 70 -7.2 -3.76168 | GATATTTGTCAGTTT CCATTT CTA AAATGG TTATTCCATTATCAT TERM 336 209209 - 209185 - R 83 -6.6 -5.252 | opp_overlap 209185 TATTTGCATAAAAAA TAGAATAAGT ATTAA ACTTATCCTA TTTGACCTATATATT CLK_A0271 209780 - 209223 - | putative sporulation protein YyaC CLK_A0272 210127 - 210933 + | ADP-ribosylglycohydrolase TERM 337 211023 - 211036 + T 70 -2.5 -5.60689 | TGGTTATAAATTGTA TAAAT TAAA ATTTA TTTTTTATTGTATAA TERM 338 211146 - 211120 - T 79 -8.1 -4.17701 | opp_overlap 211121, overlap 211121 GCCATAAACTATAAA GTAGCAAGACT TATAT AGTCTTGCTAT TTTTTGGTAAATCTT TERM 339 211145 - 211121 - T 90 -11.6 -3.09897 | opp_overlap 211121, overlap 211120 CCATAAACTATAAAG TAGCAAGACT TATAT AGTCTTGCTA TTTTTTGGTAAATCT TERM 340 211121 - 211145 + T 100 -11.6 -5.17353 | opp_overlap 211121 211120 CCATAAACTATAAAG TAGCAAGACT TATAT AGTCTTGCTA TTTTTTGGTAAATCT CLK_A0273 212948 - 211224 - | putative cell division protease FtsH-like protein TERM 341 212976 - 213029 + r 95 -11.5 -3.3858 | opp_overlap 212987, overlap 212979 212981 212987 TTTCCTCTCATAGCT TTGCATTAAAATAATCAGATATTTA TCAT TGAATATCCGATTATTTTAATGTAC TTATAAGCTTACTTT TERM 342 212979 - 213026 + r 100 -15.4 -2.84794 | opp_overlap 212987, overlap 212976 212981 212987 CCTCTCATAGCTTTG CATTAAAATAATCAGATATTTA TCAT TGAATATCCGATTATTTTAATG TACTTATAAGCTTAC TERM 343 212981 - 213024 + r 90 -12.2 -2.97017 | opp_overlap 212987, overlap 212979 212976 212987 TCTCATAGCTTTGCA TTAAAATAATCAGATATTTA TCAT TGAATATCCGATTATTTTAA TGTACTTATAAGCTT TERM 344 213018 - 212987 - R 73 -6.8 -4.25283 | opp_overlap 212981 212979 212976 212987 AGCTTTGCATTAAAA TAATCAGATATTTA TCAT TGAATATCCGATTA TTTTAATGTACTTAT TERM 345 212987 - 213018 + r 75 -6.8 -4.39889 | opp_overlap 212987, overlap 212981 212979 212976 AGCTTTGCATTAAAA TAATCAGATATTTA TCAT TGAATATCCGATTA TTTTAATGTACTTAT CLK_A0274 213349 - 213038 - | DNA gyrase, A subunit TERM 346 213554 - 213519 - R 100 -14.3 -3.85165 | opp_overlap 213523, overlap 213523 TAGTTTAAAGCCAAA CAAAGGAAGCAGATA GTTAAT TATCTGCTTCCTTTA TTTATTATCTACTGA TERM 347 213550 - 213523 - R 100 -12.9 -4.53439 | opp_overlap 213523, overlap 213519 TTAAAGCCAAACAAA GGAAGCAGATA GTTAAT TATCTGCTTCC TTTATTTATTATCTA TERM 348 213523 - 213550 + r 100 -13.6 -4.76087 | opp_overlap 213523 213519 TTAAAGCCAAACAAA GGAAGCAGATAG TTAA TTATCTGCTTCC TTTATTTATTATCTA CLK_A0275 214132 - 213644 - | putative lipoprotein CLK_A0276 214613 - 214146 - | hypothetical protein TERM 349 214703 - 214675 - R 100 -16.3 -5.21709 | opp_overlap 214675 TTTTATAGTAAAAAA GCACCTATTTAAA TTA TTTAAATAGGTGC TTTTAATGGCTAAAT TERM 350 214675 - 214703 + r 100 -16.3 -4.28548 | opp_overlap 214675 TTTTATAGTAAAAAA GCACCTATTTAAA TTA TTTAAATAGGTGC TTTTAATGGCTAAAT CLK_A0277 214946 - 214728 - | hypothetical protein TERM 351 214991 - 215005 + r 78 -4.3 -5.5074 | opp_overlap 214991, overlap 214982 ATTAATTTATTTAAA CTGAA TAATC TTCAG TTTTTTATTGAATTA CLK_A0278 215263 - 215030 - | hypothetical protein TERM 352 215679 - 215735 + r 100 -14.3 -4.62708 | opp_overlap 215688, overlap 215688 215691 ATCGTACCTTTTTAG TAAAAAAAATAATCATCTTAACTTTAA TTA TTAAAGTTAAGATGATTATTTCAATTA TTGTTTTTATCTATT TERM 353 215688 - 215726 + r 100 -19.4 -3.90086 | opp_overlap 215688, overlap 215679 215691 TTTTAGTAAAAAAAA TAATCATCTTAACTTTAA TTA TTAAAGTTAAGATGATTA TTTCAATTATTGTTT TERM 354 215726 - 215688 - R 100 -19.4 -5.86061 | opp_overlap 215688 215679 215691 TTTTAGTAAAAAAAA TAATCATCTTAACTTTAA TTA TTAAAGTTAAGATGATTA TTTCAATTATTGTTT TERM 355 215691 - 215723 + r 100 -16.7 -4.04773 | opp_overlap 215688, overlap 215688 215679 TAGTAAAAAAAATAA TCATCTTAACTTTAA TTA TTAAAGTTAAGATGA TTATTTCAATTATTG CLK_A0279 215902 - 215729 - | hypothetical protein CLK_A0280 217002 - 215923 - | hypothetical protein TERM 356 216611 - 216621 + g 70 -4 -5.00136 | ATATTTTTTATATAT TTAG TTA CTAA TTTTATATTTTCTTT TERM 357 216683 - 216701 + g 74 -3.2 -5.4505 | opp_overlap 216687, overlap 216685 216687 TTAGCATATTCGGGA TATATAAC GTT GTTATAAA TTTTTTCTTGAGACA CLK_A0281 217918 - 217022 - | hypothetical protein TERM 358 217712 - 217666 - G 78 -9.4 -3.3485 | gap 1, opp_overlap 217663 217675 217678, overlap 217660 217664 217671 217678 TAAAAAAACTTAATA TTATATTAATAATAGAATTAA ATAAGA TTAATTCTATTATTAA-ATAA GATACTGTTTTAGAT TERM 359 217708 - 217671 - G 90 -11.8 -2.93637 | opp_overlap 217663 217675 217678, overlap 217660 217666 217664 217678 AAACTTAATATTATA TTAATAATAGAATTAA ATAAGA TTAATTCTATTATTAA ATAAGATACTGTTTT TERM 360 217675 - 217704 + g 70 -8.2 -3.07113 | opp_overlap 217671 217666 217664 217678, overlap 217663 217678 TTAATATTATATTAA TAATAGAATTAA ATAAGA TTAATTCTATTA TTAAATAAGATACTG CLK_A0282 219348 - 217942 - | hypothetical protein TERM 361 218040 - 218050 + g 86 -2.6 -6.00086 | TTTTATTTACTTTTT TAAA TTC TTTA TTTTTTTTATCATAT CLK_A0283 220107 - 219379 - | hypothetical protein TERM 362 220265 - 220306 + r 100 -17.7 -2.70298 | opp_overlap 220270, overlap 220270 AAGCCATAAACTATA AAAAATGTAGCAAGAACAT AAAT ATGTTCTTGCTACATTTTC ATTATGCTTCAGGAG TERM 363 220301 - 220270 - R 100 -17.6 -5.43621 | opp_overlap 220265 220270 ATAAACTATAAAAAA TGTAGCAAGAACAT AAAT ATGTTCTTGCTACA TTTTCATTATGCTTC TERM 364 220270 - 220301 + r 100 -17.6 -4.52781 | opp_overlap 220270, overlap 220265 ATAAACTATAAAAAA TGTAGCAAGAACAT AAAT ATGTTCTTGCTACA TTTTCATTATGCTTC CLK_A0284 225056 - 220308 - | hypothetical protein TERM 365 221305 - 221318 + g 70 -5.3 -4.55849 | overlap 221314 AAATCATCTTTTTCT TTACC ATTT GGTAA TTTATTTACCTTTTC TERM 366 225309 - 225281 - R 100 -13.4 -5.04325 | opp_overlap 225277 225288 225308 TTGAAAGCATAAAAA TAGGCAATAAGA ATTGA TCTTATTGCCTA TGAATCATATCTAGT CLK_A0285 226628 - 225300 - | replicative DNA helicase TERM 367 226475 - 226493 + g 77 -9 -3.68351 | ATAAATTGTTCATTG CATCAAAT AAA ATTTGATG TTTAGGTAATAAAAA CLK_A0286 227436 - 226618 - | hypothetical protein CLK_A0287 228613 - 227423 - | hypothetical protein TERM 368 227469 - 227482 + g 71 -6.7 -3.96867 | overlap 227475 TTTTGTCTTATTATT GCTAC TCGA GTAGC TTGCTTTTCTTTTTC TERM 369 227877 - 227903 + g 76 -6.7 -4.49981 | opp_overlap 227877 227879, overlap 227879 227889 TTTGCTAATTTTAAA TATCCCTTAAT ATAGG ATTGAGGGATG TTTTCTAATCCTATA TERM 370 227879 - 227901 + g 71 -7.1 -3.85254 | opp_overlap 227879 227877, overlap 227877 227889 TGCTAATTTTAAATA TCCCTTAAT ATAGG ATTGAGGGA TGTTTTCTAATCCTA TERM 371 228104 - 228115 + g 75 -4.4 -5.24799 | overlap 228111 TGCCTTTTTTATATC TTCC AAAG GGAA TTTTTCTCTTTCTAA CLK_A0288 229071 - 228655 - | hypothetical protein CLK_A0289 229579 - 229064 - | putative sigma K CLK_A0290 230628 - 229744 - | putative RNA polymerase sigma factor TERM 372 230671 - 230713 + r 82 -10.1 -3.00565 | opp_overlap 230672 230674 230676 230680, overlap 230674 230680 AATATGATTTTATAG ATATACAAAGCCAGAGATA CGATA TACTTCTGGCTTTGTATAA TATGCTTATATAGTT TERM 373 230712 - 230672 - R 100 -14.3 -2.9039 | opp_overlap 230671 230674 230680, overlap 230674 230676 230680 ATATGATTTTATAGA TATACAAAGCCAGAGATAC GAT ATACTTCTGGCTTTGTATA ATATGCTTATATAGT TERM 374 230674 - 230710 + r 86 -11.8 -2.72477 | opp_overlap 230672 230674 230676 230680, overlap 230671 230680 ATGATTTTATAGATA TACAAAGCCAGAGATA CGATA TACTTCTGGCTTTGTA TAATATGCTTATATA TERM 375 230710 - 230674 - R 90 -12.5 -3.002 | opp_overlap 230674 230671 230680, overlap 230672 230676 230680 ATGATTTTATAGATA TACAAAGCCAGAGATAC GAT ATACTTCTGGCTTTGTA TAATATGCTTATATA TERM 376 230708 - 230676 - R 85 -10.7 -3.05498 | opp_overlap 230674 230671 230680, overlap 230674 230672 230680 GATTTTATAGATATA CAAAGCCAGAGATAC GAT ATACTTCTGGCTTTG TATAATATGCTTATA CLK_A0291 231507 - 230719 - | ribosomal protein S1 TERM 377 231814 - 231790 - R 86 -7.9 -4.9041 | ATTACAAAAAAAGAA CAGTAGCCATT TTA ATTAGCTACTG TAGGAACTAGTAATA TERM 378 231848 - 231824 - R 73 -8.8 -2.78547 | opp_overlap 231828 231830, overlap 231828 CTACTGTAGGAACTA GTAATATATC TCCAG GATATATTAC CTCCCCTATATTGTT CLK_A0292 232088 - 231801 - | LysM domain-containing protein TERM 379 231985 - 231998 + g 85 -2.5 -5.8901 | TATTCCATACTGTTA TTATT ACTT AATAA TTTTTTATTTTCTAT TERM 380 232248 - 232204 - R 100 -16.1 -4.48664 | opp_overlap 232204 232209, overlap 232209 TAAATATATAAGAAA TAAAAGCAGCAAAGCTATTTA ATC TAATTAGCCTTACTGCTTTTA TTTTTCCTTTTAGAA TERM 381 232204 - 232248 + r 100 -11.7 -5.0925 | opp_overlap 232204 232209, overlap 232209 TAAATATATAAGAAA TAAAAGCAGCAAAGCTATTTA ATC TAATTAGCCTTACTGCTTTTA TTTTTCCTTTTAGAA TERM 382 232209 - 232243 + r 90 -7.2 -5.36689 | opp_overlap 232209 232204, overlap 232204 ATATAAGAAATAAAA GCAGCAAAGCTATTTA ATC TAATTAGCCTTACTGC TTTTATTTTTCCTTT TERM 383 232243 - 232209 - R 100 -11.6 -5.16038 | opp_overlap 232204 232209, overlap 232204 ATATAAGAAATAAAA GCAGCAAAGCTATTTA ATC TAATTAGCCTTACTGC TTTTATTTTTCCTTT TERM 384 232252 - 232270 + r 71 -6.8 -4.16814 | TTACTGCTTTTATTT TTCCTTTT AGA AGAAGGAA TTGTTTATCTAATAA CLK_A0293 233642 - 232425 - | plasmid transfer factor, TraK TERM 385 233702 - 233735 + r 70 -4 -5.25799 | opp_overlap 233704, overlap 233704 TACAAAAGAAAAAAA CACACCAGTTTAAT AAAAAA ATTAAGTTGGTGTA TTTTTATATTATTTT TERM 386 233704 - 233733 + r 73 -6.6 -4.20977 | opp_overlap 233704, overlap 233702 CAAAAGAAAAAAACA CACCAGTTTAAT AAAAAA ATTAAGTTGGTG TATTTTTATATTATT CLK_A0294 235699 - 233753 - | ATPase involved in conjugal plasmid transfer CLK_A0295 236595 - 235699 - | hypothetical protein TERM 387 237190 - 237156 - R 83 -7.5 -4.59069 | gap 1, opp_overlap 237156 237159 AGGACAAGTAGAAAA GACCATGAAATTATAT AAAA ATATAATT-CATGATC TTTGTTTGGTCCCTA CLK_A0296 237847 - 237203 - | hypothetical protein CLK_A0297 238273 - 237896 - | hypothetical protein TERM 388 238327 - 238294 - R 82 -9.9 -3.0264 | opp_overlap 238293 238296 238315, overlap 238296 238298 238316 AAACCTCCTCTAAGA TATATGTATACATTT TTCA ATATGTATACATATA CTGTATACAATGTAG TERM 389 238325 - 238296 - R 71 -8.1 -3.06815 | opp_overlap 238293 238296 238315, overlap 238294 238298 238316 ACCTCCTCTAAGATA TATGTATACATTT TTCA ATATGTATACATA TACTGTATACAATGT TERM 390 238615 - 238591 - R 71 -6.6 -4.1193 | opp_overlap 238591 238593, overlap 238586 ATATGAAAAATATAA TATGTACACA TATGT TGTATACATA ATGTACTGTATATAC TERM 391 238730 - 238686 - R 70 -6.1 -4.31815 | opp_overlap 238689 AAATCAGAATATAAA TAACTAGCTAATATATA TAGTTTTTAAT TAAATATTAGCTAGTTA TAAGGTTATTTGATA CLK_A0298 239800 - 238748 - | hypothetical protein TERM 392 239393 - 239371 - G 70 -8.6 -2.53346 | opp_overlap 239368 239371 239373, overlap 239370 239363 239373 CTACAAATTTAATAG TATGCTCAAA GTC TTTAAGCATA TCATTTAATGCCTGT CLK_A0299 240374 - 239931 - | A24 family peptidase TERM 393 240279 - 240302 + g 71 -2.4 -5.48825 | opp_overlap 240268 240279 AGCACCTAATATATA GGACCAATAG TTTT CTATTTCTCC TTTTTTTAGATCATA CLK_A0300 241486 - 240377 - | hypothetical protein CLK_A0301 242222 - 241563 - | hypothetical protein TERM 394 242325 - 242357 + r 100 -16.5 -5.88471 | opp_overlap 242325 CACATTTTTTAAAAA GCCCCTTATGTATTT TAT ATATACATAAGGGGC TTTTTTTTAATCATA TERM 395 242357 - 242325 - R 100 -16.5 -4.59109 | opp_overlap 242325 CACATTTTTTAAAAA GCCCCTTATGTATTT TAT ATATACATAAGGGGC TTTTTTTTAATCATA CLK_A0302 243011 - 242364 - | hypothetical protein CLK_A0303 243486 - 243016 - | hypothetical protein CLK_A0304 243920 - 243501 - | hypothetical protein CLK_A0305 244147 - 243881 - | stage III sporulation protein D (14 kDa transcription factor) TERM 396 244277 - 244236 - R 95 -5.3 -6.13503 | opp_overlap 244240 244267, overlap 244237 244240 TATTAATAAAAAAAA CGAAGAGCTAGGACAAAAT TTAA ATTTTATTCTAGCTCTTTT AGTTAGTTTAATGAA TERM 397 244276 - 244237 - R 84 -8.8 -4.25661 | opp_overlap 244240 244267, overlap 244236 244240 ATTAATAAAAAAAAC GAAGAGCTAGGACAAAAT TTAA ATTTTATTCTAGCTCTTT TAGTTAGTTTAATGA TERM 398 244273 - 244240 - R 95 -10.5 -4.18638 | opp_overlap 244240 244267, overlap 244237 244236 AATAAAAAAAACGAA GAGCTAGGACAAAAT TTAA ATTTTATTCTAGCTC TTTTAGTTAGTTTAA TERM 399 244240 - 244273 + r 100 -10.5 -4.5287 | opp_overlap 244237 244236 244240, overlap 244267 AATAAAAAAAACGAA GAGCTAGGACAAAAT TTAA ATTTTATTCTAGCTC TTTTAGTTAGTTTAA CLK_A0306 244557 - 244309 - | hypothetical protein TERM 400 244654 - 244627 - R 100 -9.4 -5.75538 | opp_overlap 244627 TGCAAAAAATAAAAA TCGTACTATTTT AATT AAAATAATACGA TTTTTTATAAAATAT TERM 401 244627 - 244654 + r 87 -7.2 -5.26918 | opp_overlap 244627 TGCAAAAAATAAAAA TCGTACTATTTT AATT AAAATAATACGA TTTTTTATAAAATAT CLK_A0307 244900 - 244730 - | hypothetical protein TERM 402 244988 - 244962 - R 100 -9.7 -5.65177 | opp_overlap 244962 ATAGGTACAAAAAAA GATTATACATT GACTT AATGTATAATC TTTTTTATTACATTC TERM 403 244962 - 244988 + r 100 -10.4 -5.5074 | opp_overlap 244962 ATAGGTACAAAAAAA GATTATACATTG ACT TAATGTATAATC TTTTTTATTACATTC CLK_A0308 245748 - 244996 - | type II secretion system protein F CLK_A0309 246692 - 245766 - | type II secretion system protein F TERM 404 246462 - 246452 - G 70 -4 -4.86954 | overlap 246442 AATAAGAAAAAATAA TGTT TTC AACA TCTGCATTTATACCT CLK_A0310 247159 - 246812 - | hypothetical protein CLK_A0311 248443 - 247184 - | type II secretion system protein E TERM 405 248482 - 248523 + r 100 -22.1 -4.3351 | opp_overlap 248487 248492 248495, overlap 248475 CTGATATAACGTGTA TACAATAGAATAAGGCTTA ATAT TAAGCCTTATTCTATTGTA TTTATTAGATTTTCT TERM 406 248518 - 248487 - R 100 -16.2 -3.50715 | opp_overlap 248482 248475, overlap 248492 248495 ATAACGTGTATACAA TAGAATAAGGCTTA ATAT TAAGCCTTATTCTA TTGTATTTATTAGAT TERM 407 248513 - 248492 - R 91 -10.3 -3.79874 | opp_overlap 248482 248475, overlap 248487 248495 GTGTATACAATAGAA TAAGGCTTA ATAT TAAGCCTTA TTCTATTGTATTTAT TERM 408 248510 - 248495 - R 77 -7.6 -4.02093 | opp_overlap 248482 248475, overlap 248492 248487 TATACAATAGAATAA GGCTTA ATAT TAAGCC TTATTCTATTGTATT CLK_A0312 249974 - 248511 - | septum formation inhibitor-activating ATPase CLK_A0313 250674 - 250048 - | SAF domain-containing protein TERM 409 250078 - 250090 + g 71 -2 -5.44119 | ATTTGGCATATCTTT TTCT TTTGT AGAA TTTTTTTGAGGTAAA TERM 410 250275 - 250304 + g 73 -9.5 -2.67171 | overlap 250274 250272 250277 TTATTTGAGGATTTT CATTAGCATTATT TTCT ATTAATGCTAATG CTATTTCATCGCCTG TERM 411 250386 - 250406 + g 93 -5.5 -5.90981 | opp_overlap 250389 CATTAGATTTTAATT TAATTGAAG TAT CTCCAATTA TTTTTTTTGGTATAA CLK_A0314 251326 - 250781 - | hypothetical protein TERM 412 251439 - 251406 - R 100 -11.3 -5.77734 | opp_overlap 251406 AAATAAAAATAAAAA CTATGTCTAAAGTAA TTTT TTACTCTAAACATAG TTTTTTCTTATTTTG TERM 413 251406 - 251439 + r 90 -6.9 -5.77677 | opp_overlap 251406 AAATAAAAATAAAAA CTATGTCTAAAGTAA TTTT TTACTCTAAACATAG TTTTTTCTTATTTTG CLK_A0315 253198 - 251447 - | NLP/P60 protein CLK_A0316 255018 - 253234 - | hypothetical protein TERM 414 253517 - 253527 + g 79 -5.4 -5.20333 | AATATATTTTTATTA GGAT CAT ATCC TTTTTGTTCTGAATA TERM 415 255100 - 255072 - R 100 -8.3 -5.75342 | opp_overlap 255074, overlap 255074 TTCTTTTAAAAAAAA TAGAGAGTAATTT TTA AAATTACCCTCTT CTTATAGACTTAATT TERM 416 255098 - 255074 - R 100 -10.9 -4.52949 | opp_overlap 255074, overlap 255072 CTTTTAAAAAAAATA GAGAGTAATTT TTA AAATTACCCTC TTCTTATAGACTTAA TERM 417 255074 - 255098 + r 79 -8.7 -3.82191 | opp_overlap 255074 255072 CTTTTAAAAAAAATA GAGAGTAATTT TTA AAATTACCCTC TTCTTATAGACTTAA CLK_A0317 255492 - 255091 - | hypothetical protein TERM 418 255671 - 255699 + r 82 -10.5 -2.7898 | opp_overlap 255676, overlap 255676 CTATATTTATATAAC AAAAACAAGCTAT TGA ATAGCTTGTTTTA TCCTTAAATATTAAG TERM 419 255694 - 255676 - R 100 -10.4 -5.24796 | opp_overlap 255676 255671 TTTATATAACAAAAA CAAGCTAT TGA ATAGCTTG TTTTATCCTTAAATA TERM 420 255676 - 255694 + r 100 -10.4 -4.55491 | opp_overlap 255676, overlap 255671 TTTATATAACAAAAA CAAGCTAT TGA ATAGCTTG TTTTATCCTTAAATA CLK_A0318 257572 - 255710 - | AAA ATPase TERM 421 256733 - 256743 + g 70 -4 -4.87665 | TAAAGAAGAGTGTTT GTTT ATG AAAC TTTTTATAAATACAG TERM 422 257482 - 257472 - G 78 -4 -5.36441 | TCTGGAGAGAAAAAA GAAA ATT TTTC AGGAACATTATTTTC CLK_A0319 258290 - 257562 - | hypothetical protein CLK_A0320 258654 - 258373 - | hypothetical protein TERM 423 258680 - 258716 + r 85 -11.1 -2.82291 | opp_overlap 258680, overlap 258677 CTCCCTTCATTAAAA TTATGGAACTCAGTATG ATG TGTACTGAATTCCATAA TAATTAATCTACATT TERM 424 258716 - 258680 - R 100 -11.9 -4.25104 | opp_overlap 258680 258677 CTCCCTTCATTAAAA TTATGGAACTCAGTA TGATGTG TACTGAATTCCATAA TAATTAATCTACATT CLK_A0321 259102 - 258725 - | hypothetical protein CLK_A0322 259620 - 259285 - | hypothetical protein TERM 425 259666 - 259696 + r 95 -10 -4.20977 | overlap 259664 TTTTTTATTTGAGGC GAAGTTTTTAAAAA ATA TTTTTAAAATCTTC TATTTTTATATTGTT CLK_A0323 260488 - 259673 - | putative sporulation sigma factor SigK CLK_A0324 260754 - 260443 - | hypothetical protein TERM 426 260844 - 260873 + r 79 -8.7 -3.63837 | gap 1, opp_overlap 260844 260846, overlap 260846 260870 260871 TATTTAAAAATAAAA G-AGCCTTCACCAT ATA ATGATGAAGGCTGC TTATTAAGCAATTCT TERM 427 260872 - 260844 - R 100 -11.1 -5.2853 | opp_overlap 260844 260846 260870 260871, overlap 260846 TATTTAAAAATAAAA GAGCCTTCACCAT ATA ATGATGAAGGCTG CTTATTAAGCAATTC TERM 428 260870 - 260846 - R 100 -13.7 -4.25502 | opp_overlap 260844 260846, overlap 260844 TTTAAAAATAAAAGA GCCTTCACCAT ATA ATGATGAAGGC TGCTTATTAAGCAAT TERM 429 260846 - 260870 + r 88 -11.5 -2.93252 | opp_overlap 260846 260844, overlap 260844 TTTAAAAATAAAAGA GCCTTCACCAT ATA ATGATGAAGGC TGCTTATTAAGCAAT CLK_A0325 262820 - 260877 - | hypothetical protein CLK_A0326 263448 - 262867 - | hypothetical protein TERM 430 263019 - 263029 + g 76 -2.6 -5.63236 | opp_overlap 263019 AAGCATCTATAAGAT TAAT TTG ATTA TTTTTCTTTTTAAGT TERM 431 263573 - 263541 - R 100 -10.2 -5.88476 | gap 1, opp_overlap 263514 263541 AAAATAAATAAAAAA GCAATGCTATTTATA TTTT TA-AAATAGCATTGC TTTTAAAAGATTAAG TERM 432 263541 - 263573 + r 93 -10.2 -4.11484 | gap 1, opp_overlap 263541, overlap 263514 AAAATAAATAAAAAA GCAATGCTATTTATA TTTT TA-AAATAGCATTGC TTTTAAAAGATTAAG CLK_A0327 265518 - 263584 - | putative ATPase involved in DNA repair TERM 433 263948 - 263973 + g 88 -2.7 -6.20267 | ATAGTTAATTTCAAT GAAGATATT CTATTATT AGTATCTTC TTTTTTTCTTTTTAA TERM 434 265278 - 265288 + g 70 -4 -4.94262 | overlap 265279 CATACTCCTTATCAT CTAT ACT ATAG TTTATTTTTACTATA TERM 435 265279 - 265308 + g 72 -6.7 -4.08064 | overlap 265278 ATACTCCTTATCATC TATACTATAGT TTATTTTT ACTATAGTATA TTTTGAAGAAAGATT CLK_A0328 265912 - 265535 - | hypothetical protein TERM 436 266051 - 266020 - R 100 -9.8 -5.44721 | gap 1, opp_overlap 266019 266026 266028, overlap 266006 266024 ATTATTTCAAAAAAA TAAATATAGCTAAGA AAA TCTTAGCTATA-TTA CAGTAATTATTGTTT TERM 437 266048 - 266024 - R 100 -13.1 -5.20328 | opp_overlap 266019 266026 266028, overlap 266020 TTTCAAAAAAATAAA TATAGCTAAGA AAA TCTTAGCTATA TTACAGTAATTATTG TERM 438 266026 - 266046 + r 87 -11.3 -3.08283 | opp_overlap 266024 266020, overlap 266019 266028 TCAAAAAAATAAATA TAGCTAAGA AAA TCTTAGCTA TATTACAGTAATTAT TERM 439 266028 - 266044 + r 78 -9.5 -3.09557 | opp_overlap 266024 266020, overlap 266026 266019 AAAAAAATAAATATA GCTAAGA AAA TCTTAGC TATATTACAGTAATT CLK_A0329 266466 - 266044 - | DNA topoisomerase III SEQUENCE gi|170758191|ref|NC_010520.1| Clostridium botulinum A3 str. Loch Maree, complete genome (length 3992906) dnaA 14 - 1351 + | chromosomal replication initiator protein DnaA TERM 1 2039 - 2021 - g 72 -2.5 -5.48163 | AAATAAATTAAAAAA TATGATT AAAGG AACCATA TTTGCTACAGCTCAA dnaN 1614 - 2717 + | DNA polymerase III, beta chain CLK_3135 2737 - 2943 + | S4 domain-containing protein recF 3012 - 4106 + | DNA replication and repair protein RecF CLK_3137 4127 - 4390 + | hypothetical protein gyrB 4408 - 6321 + | DNA gyrase, B subunit gyrA 6347 - 8842 + | DNA gyrase, A subunit TERM 2 8840 - 8887 + F 100 -14.6 -4.48987 | opp_overlap 8844 8856, overlap 8844 8847 8856 AATTCAAATGAAGAA TAAATAATAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTATTATAAA TTTTAATTATAAAAA TERM 3 8883 - 8844 - f 100 -19.8 -4.54404 | opp_overlap 8840 8844 8847 8856, overlap 8856 CAAATGAAGAATAAA TAATAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTATTA TAAATTTTAATTATA TERM 4 8844 - 8883 + F 100 -19.8 -2.8155 | opp_overlap 8844 8856, overlap 8840 8847 8856 CAAATGAAGAATAAA TAATAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTATTA TAAATTTTAATTATA TERM 5 8847 - 8880 + F 100 -17.1 -3.53787 | opp_overlap 8844 8856, overlap 8844 8840 8856 ATGAAGAATAAATAA TAAGAAAAATCAGCA TTAA TGCTGATTTTTCTTA TTATAAATTTTAATT TERM 6 8856 - 8871 + F 100 -7.6 -5.34365 | opp_overlap 8844 8856, overlap 8847 8844 8840 AAATAATAAGAAAAA TCAGCA TTAA TGCTGA TTTTTCTTATTATAA TERM 7 8871 - 8856 - f 100 -7.6 -5.40014 | opp_overlap 8856 8847 8844 8840, overlap 8844 AAATAATAAGAAAAA TCAGCA TTAA TGCTGA TTTTTCTTATTATAA TERM 8 9048 - 9032 - f 70 -5.1 -4.84311 | overlap 9034 TTTGATACAATAAAA CTCGTCC TTG AGACAAG GGCTTGAAAGAAACA TERM 9 9107 - 9092 - f 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC GACAAATTTGATAAG TERM 10 10747 - 10728 - f 75 -9.2 -2.65808 | opp_overlap 10731 10734, overlap 10725 10740 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 11 10866 - 10845 - f 79 -8.9 -3.66908 | TTCTCTCAAAATGAA GTTAAACAT ACTA ATGTTTAAC TAAGTGATTGTACCA TERM 12 11111 - 11126 + F 75 -9 -3.23572 | opp_overlap 11108 11111, overlap 11109 11121 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 13 11126 - 11111 - f 72 -9 -2.69489 | opp_overlap 11111 11109 11121, overlap 11108 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 14 11270 - 11253 - f 76 -8.5 -3.695 | opp_overlap 11252 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 15 11436 - 11421 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 16 11510 - 11499 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 17 14223 - 14207 - f 72 -8.7 -2.62616 | overlap 14222 TCAGTTGGGAGAGCA CCTGCCT TGC AAGCAGG GGGTCAGGAGTTCGA TERM 18 14296 - 14261 - f 75 -7.8 -3.96624 | opp_overlap 14263, overlap 14263 TATCTCCACCATAAA TATAAGATACTTATGA ATTT TCATAGGTATCTTATT TTTTTATATCCATTT TERM 19 14294 - 14263 - f 91 -10.4 -3.57406 | opp_overlap 14263, overlap 14261 TCTCCACCATAAATA TAAGATACTTATGA ATTT TCATAGGTATCTTA TTTTTTTATATCCAT TERM 20 14263 - 14294 + F 100 -12.6 -5.72616 | opp_overlap 14263 14261 TCTCCACCATAAATA TAAGATACTTATGA ATTT TCATAGGTATCTTA TTTTTTTATATCCAT CLK_3149 14451 - 14873 + | hypothetical protein TERM 21 14925 - 14915 - g 81 -2.6 -5.74288 | opp_overlap 14915 AGAAAGAAGAAAAAA TATT GAA AATA TGTTAATGAAAAACA CLK_3150 14889 - 15410 + | putative transcriptional regulator CLK_3151 15412 - 16575 + | iron-sulfur cluster-binding protein TERM 22 16749 - 16759 + G 72 -2.6 -5.4492 | TTTTAATGATTCCTA TATT TAT AATA TTTTTTATATCTATA TERM 23 16975 - 16991 + G 75 -4.5 -5.02777 | overlap 16977 TAATGTGAAAGACCC TATCTTT TTT AAAGATG TTTCTTTTTATGTAT CLK_3152 16580 - 19261 + | hypothetical protein TERM 24 19288 - 19326 + F 77 -4.7 -5.29385 | gap 1, opp_overlap 19294 19297, overlap 19294 ACTATAATTAATATC TGTA-AAGAACCCCATGT ATTT ATAAGGGGTTCTTATTCA TTTTTTGATTAAATT TERM 25 19294 - 19319 + F 79 -8.3 -4.0749 | opp_overlap 19294 19297, overlap 19288 ATTAATATCTGTAAA GAACCCCATGT ATTT ATAAGGGGTTC TTATTCATTTTTTGA CLK_3153 19398 - 20174 + | ErfK/YbiS/YcfS/YnhG family protein CLK_3154 20199 - 21596 + | oxidoreductase, FAD dependent CLK_3155 21613 - 21966 + | hypothetical protein TERM 26 22229 - 22259 + F 100 -11.9 -5.94214 | overlap 22225 GGGTGGCAACGCGGA GCTTTTCGTCCCT TTTAT AGGGACGAGGGGC TTTTTTTATTATATT TERM 27 22329 - 22303 - f 74 -8.2 -3.33037 | opp_overlap 22302, overlap 22304 22306 ATCTGAAAGGAGGAA GTATTTATTGGA TAA TCCAATAAATAA AATATTATGTTAGAT TERM 28 22328 - 22304 - f 86 -11.7 -2.5934 | opp_overlap 22302, overlap 22303 22306 TCTGAAAGGAGGAAG TATTTATTGGA TAA TCCAATAAATA AAATATTATGTTAGA TERM 29 22326 - 22306 - f 80 -9.9 -2.83273 | opp_overlap 22302, overlap 22304 22303 TGAAAGGAGGAAGTA TTTATTGGA TAA TCCAATAAA TAAAATATTATGTTA TERM 30 22732 - 22719 - g 70 -5.3 -4.65458 | TATAGAAATAAGAAA TTGGT CAGA ACCAA CAAAATTTGATTTTG serS 22336 - 23616 + | seryl-tRNA synthetase TERM 31 23667 - 23705 + T 70 -3.5 -5.3321 | gap 1 TTAATTTAAAATAAA CACTATTAAA-TTAATTA ATTA TGATAAAATTTAATAGTG TTTTTATTATTAGTT TERM 32 23936 - 23920 - T 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTACGGGTGACCGT TERM 33 24097 - 24118 + T 100 -8.9 -6.10295 | opp_overlap 24099 CTTTCTCCGCCAAGG CATTTAACA CTAG TGTTAAATG TTTTTTTTATATTAA TERM 34 24444 - 24428 - T 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTACGGGTGACCGT TERM 35 24604 - 24628 + T 100 -10.2 -5.21236 | opp_overlap 24604 TCTTTCTCCGCCAAA GCATTTAACT CTTAA AGTTAAATGC TTTTTATTATGGGTT TERM 36 24628 - 24604 - T 95 -10.9 -3.53012 | opp_overlap 24604 TCTTTCTCCGCCAAA GCATTTAACTC TTA AAGTTAAATGC TTTTTATTATGGGTT TERM 37 24773 - 24794 + T 100 -11.7 -5.56263 | opp_overlap 24773 CACCATAAATAAAAA GTCTTTCGA TAAA TCGAAAGAC TTTTTATTTTCTGCT TERM 38 24794 - 24773 - T 100 -11.7 -5.40464 | opp_overlap 24773 CACCATAAATAAAAA GTCTTTCGA TAAA TCGAAAGAC TTTTTATTTTCTGCT psd 25685 - 24798 - | phosphatidylserine decarboxylase TERM 39 25544 - 25556 + g 70 -3.5 -5.13354 | opp_overlap 25544, overlap 25549 AATAAAACCCATATA TTTTT GAA AAAAA TTTCTTTTTTATAAA TERM 40 25549 - 25560 + g 71 -3 -5.28778 | opp_overlap 25544, overlap 25544 AACCCATATATTTTT GAAA AAAA TTTC TTTTTTATAAATGCT CLK_3159 27395 - 25797 - | hypothetical protein TERM 41 26641 - 26666 + g 71 -3.3 -5.33785 | opp_overlap 26641 26645 ATTTGTTTTAATATA GATATAGCTAA TTTA TGAGCTACATC TTTTTTATCATAATT TERM 42 27461 - 27443 - R 75 -5.3 -5.03227 | gap 1, opp_overlap 27443 27445 ATAGTATAAATAAAA GCCCTAAC CTTA GTT-GGGC TTGTTAATATTATTT CLK_3160 27791 - 27471 - | hypothetical protein TERM 43 28023 - 28000 - H 74 -9 -2.96216 | gap 1, opp_overlap 28010 28011 28015, overlap 28003 28016 GCTCAGTAGGATAGA GCA-GCAGTTT CCT AAACTGCGTGC CGCAGGTTCGATTCC TERM 44 28019 - 28003 - H 75 -9.5 -2.71744 | opp_overlap 28010 28011 28015, overlap 28000 28016 CAGTAGGATAGAGCA GCAGTTT CCT AAACTGC GTGCCGCAGGTTCGA TERM 45 28028 - 28016 - H 79 -9.1 -3.54741 | opp_overlap 28015 28011 28010, overlap 28003 28000 CAGCAGTTTCCTAAA CTGCG TGC CGCAG GTTCGATTCCTGTCG TERM 46 28056 - 28081 + H 100 -9.2 -6.07374 | opp_overlap 28056 TCGGGCGTACCAAAA GTCTTATAAC TTAATT GTTATAAGAC TTTTTTATTTTTTGT TERM 47 28081 - 28056 - H 89 -9.2 -4.25104 | opp_overlap 28056 TCGGGCGTACCAAAA GTCTTATAAC TTAATT GTTATAAGAC TTTTTTATTTTTTGT CLK_3162 28186 - 29736 + | putative sensory box sigma-54 dependent transcriptional regulator TERM 48 29996 - 29964 - g 83 -10 -3.61946 | overlap 29962 CATGGGAGATAAACA GTTTGGTTCATTGG CAACT CCAATATACCAAAC ATCTACATTTATATT TERM 49 30826 - 30813 - g 70 -5.3 -4.57569 | TGAGCTTGCTAAAAA GCAAA TGAG TTTGC CCGGTGCTATGATTT megL 29896 - 31098 + | methionine gamma-lyase TERM 50 31115 - 31152 + F 86 -8.7 -4.42386 | opp_overlap 31114 31120, overlap 31103 31116 31120 TATTTTATAAAAAAT ATAAATGTTGATTCTTT ACGC AAGGAATCAACATTTGC TTTTATAAATAAAAA TERM 51 31116 - 31151 + F 93 -12.2 -3.2511 | opp_overlap 31114 31120, overlap 31103 31115 31120 ATTTTATAAAAAATA TAAATGTTGATTCTTT ACGC AAGGAATCAACATTTG CTTTTATAAATAAAA TERM 52 31120 - 31147 + F 95 -10.8 -4.27483 | opp_overlap 31114 31120, overlap 31116 31115 TATAAAAAATATAAA TGTTGATTCTTT ACGC AAGGAATCAACA TTTGCTTTTATAAAT TERM 53 31147 - 31120 - f 85 -8.6 -4.68607 | opp_overlap 31120 31116 31115, overlap 31114 TATAAAAAATATAAA TGTTGATTCTTT ACGC AAGGAATCAACA TTTGCTTTTATAAAT CLK_3164 31222 - 31659 + | cytidine/deoxycytidylate deaminase family protein TERM 54 32209 - 32226 + F 73 -3.4 -5.49579 | opp_overlap 32209, overlap 32217 AACAAGAATTTTAAA GGTACT ATTAAA GGTACC TTTTATTTTTTATAA TERM 55 32217 - 32231 + F 72 -3.6 -5.31275 | opp_overlap 32209, overlap 32209 TTTTAAAGGTACTAT TAAAGG TAC CTTTTA TTTTTTATAATAAAA dnaX 32304 - 33929 + | DNA polymerase III, gamma and tau subunits TERM 56 34293 - 34278 - g 71 -7.6 -3.4314 | overlap 34269 GAAAGCTGAAGAAGA CACTTC AAGC GAAGTG AAAAGATTAACTGGA CLK_3166 33994 - 34335 + | hypothetical protein recR 34368 - 34964 + | recombination protein recR CLK_3168 35021 - 35284 + | hypothetical protein TERM 57 35298 - 35331 + F 100 -11.3 -5.80727 | opp_overlap 35298 35302 AAAATTTATATTTAA TAAACCATTAGAAAT ATAA AATTCTAATGGTTTA TTTTTTATTATTTTT TERM 58 35331 - 35298 - f 90 -11.3 -3.15638 | opp_overlap 35298, overlap 35302 AAAATTTATATTTAA TAAACCATTAGAAAT ATAA AATTCTAATGGTTTA TTTTTTATTATTTTT TERM 59 35327 - 35302 - f 78 -7.7 -4.23213 | opp_overlap 35298, overlap 35298 TTTATATTTAATAAA CCATTAGAAAT ATAA AATTCTAATGG TTTATTTTTTATTAT bofA 35434 - 35694 + | sigma-K factor processing regulatory protein BofA TERM 60 36402 - 36381 - g 95 -10.3 -4.08221 | TTTAATACAATTAAA TGGTGTAAA AAAA TTTACACCA AACCATAAAATGGAT sfsA 35845 - 36537 + | sugar fermentation stimulation protein CLK_3171 36593 - 37081 + | NUDIX family hydrolase CLK_3172 37199 - 37921 + | hypothetical protein TERM 61 37913 - 37959 + F 83 -7.5 -4.62102 | gap 1, opp_overlap 37909 37916 37923, overlap 37923 37951 AGAGAAGAAAATGAA CAATCCT-AAAGGAGCTTAAGT TTAA ACTTAAGCTCCTTTTAAGAAAG TTTTAATATTTTTGT TERM 62 37956 - 37916 - f 100 -14.4 -4.0219 | gap 1, opp_overlap 37913 37923 37951, overlap 37909 37923 GAAGAAAATGAACAA TCCT-AAAGGAGCTTAAGT TTAA ACTTAAGCTCCTTTTAAGA AAGTTTTAATATTTT TERM 63 37923 - 37948 + F 100 -14.9 -4.10855 | opp_overlap 37916 37909 37923, overlap 37913 ATGAACAATCCTAAA GGAGCTTAAGT TTAA ACTTAAGCTCC TTTTAAGAAAGTTTT TERM 64 37948 - 37923 - f 100 -14.9 -3.72453 | opp_overlap 37923 37913, overlap 37916 37909 ATGAACAATCCTAAA GGAGCTTAAGT TTAA ACTTAAGCTCC TTTTAAGAAAGTTTT CLK_3173 38055 - 38840 + | iron-sulfur cluster-binding protein CLK_3174 38859 - 39020 + | hypothetical protein TERM 65 39284 - 39324 + F 74 -5 -5.1286 | gap 1 TGTTTATGATTTAAA CCTCTATTCTTA-ATTTGA ACGG TTATATATAAGAATAGGGG TTTTTATAATTTTTG TERM 66 40033 - 40043 + G 70 -5.4 -4.63932 | overlap 40019 GGTAGGCCAACGCCA GCTA GTA TAGC TTTTGTTCCGCCATG CLK_3175 39403 - 40107 + | ThiF domain-containing protein CLK_3176 40190 - 41299 + | major facilitator superfamily protein CLK_3177 41328 - 42272 + | acetyltransferase TERM 67 42508 - 42493 - T 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 68 44148 - 44129 - T 75 -9.2 -2.65808 | opp_overlap 44132 44135, overlap 44126 44141 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 69 44196 - 44174 - T 72 -7.9 -3.50853 | overlap 44183 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 70 44267 - 44246 - T 79 -8.9 -3.66908 | TTCTCTCAAAATGAA GTTAAACAT TAGT ATGTTTAAC TAAGTGATTGTACCA TERM 71 44512 - 44527 + T 73 -9 -2.79915 | opp_overlap 44509 44512, overlap 44514 44522 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 72 44527 - 44512 - T 72 -9 -2.69489 | opp_overlap 44512 44514 44522, overlap 44509 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 73 44671 - 44654 - T 76 -8.5 -3.695 | opp_overlap 44653 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 74 44837 - 44822 - T 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 75 44911 - 44900 - T 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 76 47559 - 47536 - T 95 -12.6 -3.78775 | opp_overlap 47536 CGGTGGATCACCAAA GCACTTTACA ATTT TGTAAAGTGC TTTTTATTTTTGAAT TERM 77 47536 - 47559 + T 100 -12.6 -5.63236 | opp_overlap 47536 CGGTGGATCACCAAA GCACTTTACA ATTT TGTAAAGTGC TTTTTATTTTTGAAT TERM 78 47711 - 47688 - T 86 -5.5 -5.64321 | opp_overlap 47688 ATAATAAAATAAAAA TCTATATTA GTCTCA TAATATAGA TTTTTATGAATACAA TERM 79 47688 - 47711 + T 73 -5.5 -4.87665 | opp_overlap 47688 ATAATAAAATAAAAA TCTATATTA GTCTCA TAATATAGA TTTTTATGAATACAA CLK_3185 48334 - 47738 - | uracil-DNA glycosylase family protein TERM 80 49047 - 49032 - H 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 81 50687 - 50668 - H 75 -9.2 -2.65808 | opp_overlap 50671 50674, overlap 50665 50680 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 82 50735 - 50713 - H 72 -7.9 -3.50853 | overlap 50722 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 83 50806 - 50785 - H 79 -8.9 -3.66908 | TTCTCTCAAAATGAA GTTAAACAT TAGT ATGTTTAAC TAAGTGATTGTACCA TERM 84 51066 - 51051 - H 72 -9 -2.69489 | opp_overlap 51051 51053 51061, overlap 51048 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 85 51051 - 51066 + H 73 -9 -2.79915 | opp_overlap 51051 51048, overlap 51053 51061 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 86 51210 - 51193 - H 76 -8.5 -3.695 | opp_overlap 51192 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 87 51376 - 51361 - H 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 88 51450 - 51439 - H 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 89 54075 - 54098 + H 100 -12.6 -5.63236 | opp_overlap 54075 CGGTGGATCACCAAA GCACTTTACA ATTT TGTAAAGTGC TTTTTATTTTTCAAT TERM 90 54098 - 54075 - H 95 -12.6 -3.78775 | opp_overlap 54075 CGGTGGATCACCAAA GCACTTTACA ATTT TGTAAAGTGC TTTTTATTTTTCAAT TERM 91 54246 - 54272 + H 73 -3.1 -5.54192 | opp_overlap 54238, overlap 54237 TTACAAATAAAAGAA GTTCTAGAT TTAAATTTT ATCTAGAGC TTTTTTTAGATTAAT CLK_3193 54428 - 54991 + | sigma-70 family RNA polymerase sigma factor TERM 92 55446 - 55436 - g 85 -2.6 -5.9003 | AAACTAATAAAAAAA TAAA AGA TTTA GAAGTATTTGGTCTA CLK_3194 54988 - 56430 + | hypothetical protein TERM 93 56441 - 56474 + F 77 -4.7 -5.41746 | opp_overlap 56441 AATAAATAGAAGAAA TAAATCCCTAGAATA TTAA TAAATTAGGGATTTA TTTTTTTAGCCACTT TERM 94 56924 - 56909 - f 76 -6.2 -4.7339 | AACAAATTTGAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 95 58564 - 58545 - f 75 -9.2 -2.65808 | opp_overlap 58548 58551, overlap 58542 58557 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 96 58612 - 58590 - f 72 -7.9 -3.50853 | overlap 58599 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 97 58683 - 58662 - f 79 -8.9 -3.66908 | TTCTCTCAAAATGAA GTTAAACAT TAGT ATGTTTAAC TAAGTGATTGTACCA TERM 98 58928 - 58943 + F 75 -9 -3.23572 | opp_overlap 58925 58928, overlap 58926 58938 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 99 58943 - 58928 - f 72 -9 -2.69489 | opp_overlap 58928 58926 58938, overlap 58925 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 100 59087 - 59070 - f 76 -8.5 -3.695 | opp_overlap 59069 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 101 59253 - 59238 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 102 59327 - 59316 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 103 61947 - 61982 + F 78 -9.2 -3.04398 | opp_overlap 61957, overlap 61947 61957 TTCCTGGTCGAGCCA CCAGGAAAAACTAGCA GTAA TGCTAGTTTTTTTTGC GTTTTAGAACAAAAA TERM 104 61947 - 61983 + F 82 -9 -4.07568 | gap 1, opp_overlap 61957, overlap 61947 61957 TTCCTGGTCGAGCCA C-CAGGAAAAACTAGCA GTAA TGCTAGTTTTTTTTGCG TTTTAGAACAAAAAA TERM 105 61957 - 61972 + F 100 -7.6 -5.91981 | opp_overlap 61957, overlap 61947 61947 AGCCACCAGGAAAAA CTAGCA GTAA TGCTAG TTTTTTTTGCGTTTT TERM 106 61972 - 61957 - f 86 -7.6 -4.77438 | opp_overlap 61957 61947 61947 AGCCACCAGGAAAAA CTAGCA GTAA TGCTAG TTTTTTTTGCGTTTT CLK_3203 62211 - 62351 + | hypothetical protein TERM 107 63088 - 63071 - g 73 -3.5 -5.27709 | TTATAAAAAAACAAA TAAAATG GTTA CATCTTA CGGGTTTGAAATTCT CLK_3204 62683 - 63105 + | hypothetical protein CLK_3205 63247 - 63360 + | hypothetical protein TERM 108 63479 - 63467 - f 72 -4.9 -5.04868 | opp_overlap 63467 TGAAATTAAATAAAA TCTAT AAC ATAGA TAATATCAAGAATAC TERM 109 65568 - 65549 - f 75 -9.2 -2.65808 | opp_overlap 65552 65555, overlap 65546 65561 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 110 65687 - 65666 - f 79 -8.9 -3.66908 | TTCTCTCAAAATGAA GTTAAACAT ACTA ATGTTTAAC TAAGTGATTGTACCA TERM 111 65932 - 65947 + F 75 -9 -3.23572 | opp_overlap 65929 65932, overlap 65930 65942 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 112 65947 - 65932 - f 72 -9 -2.69489 | opp_overlap 65932 65930 65942, overlap 65929 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 113 66091 - 66074 - f 76 -8.5 -3.695 | opp_overlap 66073 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 114 66257 - 66242 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 115 66331 - 66320 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 116 68959 - 68984 + F 100 -9.1 -5.31877 | opp_overlap 68959 CGAGCCACCAAAAAA GCATCTAAGAT ATTT ATCTTGGGTGC TTTTTTATAGTAAGT TERM 117 68984 - 68959 - f 74 -4.7 -5.1675 | opp_overlap 68959 CGAGCCACCAAAAAA GCATCTAAGAT ATTT ATCTTGGGTGC TTTTTTATAGTAAGT CLK_3214 69094 - 69837 + | peptidil-prolyl isomerase family protein TERM 118 69869 - 69850 - f 100 -9.4 -5.64304 | opp_overlap 69850 TAATATAATAAAAAA GATAGCAA ATGT TTGCTATC TTTTTTTATTTAATG TERM 119 69850 - 69869 + F 100 -9.4 -5.99154 | opp_overlap 69850 TAATATAATAAAAAA GATAGCAA ATGT TTGCTATC TTTTTTTATTTAATG TERM 120 70208 - 70193 - f 78 -6.2 -5.05782 | ATTCATGTGAAAAAA GTTCTT GACA AAGAAC GACAAATTTGATAAG TERM 121 71848 - 71829 - f 75 -9.2 -2.65808 | opp_overlap 71832 71835, overlap 71826 71841 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 122 71896 - 71874 - f 72 -7.9 -3.50853 | overlap 71883 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 123 71967 - 71946 - f 79 -8.9 -3.66908 | TTCTCTCAAAATGAA GTTAAACAT ACTA ATGTTTAAC TAAGTGATTGTACCA TERM 124 72227 - 72212 - f 72 -9 -2.69489 | opp_overlap 72210 72212 72222, overlap 72209 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 125 72212 - 72227 + F 75 -9 -3.23572 | opp_overlap 72212 72209, overlap 72210 72222 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 126 72371 - 72354 - f 76 -8.5 -3.695 | opp_overlap 72353 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 127 72537 - 72522 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 128 72611 - 72600 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 129 75163 - 75188 + F 100 -12.1 -5.38951 | opp_overlap 75166 75169 AGATAATTATTAGGA TAAGAACTCAT TTAA ATGAGTTCTTA TTTTTTATATAAATT TERM 130 75185 - 75166 - f 82 -9.4 -3.45737 | opp_overlap 75163, overlap 75169 TAATTATTAGGATAA GAACTCAT TTAA ATGAGTTC TTATTTTTTATATAA TERM 131 75398 - 75364 - g 79 -7.6 -4.29829 | opp_overlap 75370 75386 AGAATCATTAAGAAA TAATAATAAAATAA ATATTTA TTATTTTATTATTA AAATATTTACGCCAA CLK_3222 75284 - 75463 + | sodium transporter family protein CLK_3223 75522 - 76265 + | NAD-dependent deacetylase TERM 132 76281 - 76262 - T 83 -3.6 -5.96521 | opp_overlap 76262 AGTAATTAAAAAAAA CTAATCAA ATTT TTGGTTAG TTTTTTAATTTTGAT TERM 133 76262 - 76281 + T 82 -5.8 -5.48054 | opp_overlap 76262 AGTAATTAAAAAAAA CTAATCAA ATTT TTGGTTAG TTTTTTAATTTTGAT TERM 134 76424 - 76445 + T 100 -10.3 -5.5943 | opp_overlap 76424 GTAGCGCCTCCAAAA GAGTTTTAG GATA CTAAAACTC TTTTTTTAATAATTT TERM 135 76445 - 76424 - T 95 -10.3 -4.08216 | opp_overlap 76424 GTAGCGCCTCCAAAA GAGTTTTAG GATA CTAAAACTC TTTTTTTAATAATTT CLK_3225 77359 - 76451 - | LD-carboxypeptidase family protein TERM 136 77310 - 77335 + g 100 -9.1 -4.47786 | opp_overlap 77317 TCAATAGGACTTGCA GGAGAAACTAT TCCT ATAGTATCTCC TTTGTTTAAATGCTT CLK_3226 78336 - 77395 - | CorA family protein TERM 137 77697 - 77727 + g 83 -10.6 -3.38314 | opp_overlap 77703 77705, overlap 77701 CTATAATAACATCTT CCAAGATATCTTGA TCC TCAGGATATCTTTG TATTATATCTAGCTT TERM 138 77701 - 77723 + g 91 -10 -4.3277 | opp_overlap 77703 77705, overlap 77697 AATAACATCTTCCAA GATATCTTGA TCC TCAGGATATC TTTGTATTATATCTA TERM 139 77838 - 77857 + g 85 -3.6 -5.74122 | overlap 77833 77839 GAATAAGTTCTCTAT TCTTCATA GATT TATGAAGC TTTTTTTCTATCATC TERM 140 77839 - 77856 + g 74 -7.1 -4.02846 | overlap 77833 77838 AATAAGTTCTCTATT CTTCATA GATT TATGAAG CTTTTTTTCTATCAT TERM 141 78496 - 78484 - H 82 -2.7 -6.20267 | opp_overlap 78480 TTAAAAATAAAAAAA CAAAC ATT GTTTA ATTTTTAACTATAGC TERM 142 79187 - 79175 - g 76 -3.5 -5.3658 | opp_overlap 79181 79186, overlap 79170 79186 ATTACAAAAATAAAA TATTT ATC AAATA AGAGACTAGCCAGCT CLK_3227 78701 - 79204 + | hypothetical protein TERM 143 79181 - 79216 + T 93 -9.2 -4.64334 | opp_overlap 79175 79186 79189, overlap 79186 79189 AAAATAAAATATTTA TCAAATAAGAGACTAG CCAG CTAGTCTCTTATTCTA TTTTATTAAAAAATT TERM 144 79211 - 79186 - T 100 -13.5 -3.81154 | opp_overlap 79186 79181 79189, overlap 79175 79189 AAAATATTTATCAAA TAAGAGACTAG CCAG CTAGTCTCTTA TTCTATTTTATTAAA TERM 145 79186 - 79211 + T 100 -13.5 -4.0865 | opp_overlap 79175 79186 79189, overlap 79181 79189 AAAATATTTATCAAA TAAGAGACTAG CCAG CTAGTCTCTTA TTCTATTTTATTAAA TERM 146 79208 - 79189 - T 95 -10.8 -4.01902 | opp_overlap 79189 79186 79181, overlap 79186 ATATTTATCAAATAA GAGACTAG CCAG CTAGTCTC TTATTCTATTTTATT TERM 147 79189 - 79208 + T 95 -10.8 -4.13421 | opp_overlap 79186 79189, overlap 79186 79181 ATATTTATCAAATAA GAGACTAG CCAG CTAGTCTC TTATTCTATTTTATT CLK_3228 80369 - 79209 - | amidohydrolase-like protein TERM 148 79836 - 79815 - G 71 -8.9 -2.77007 | opp_overlap 79815, overlap 79812 AAGACCATTTAATGA TGAAAATAC ATTA GTATTTTCA TAGCTTAAGGTTTCC TERM 149 79815 - 79836 + g 70 -8.9 -2.56046 | opp_overlap 79812 79815 AAGACCATTTAATGA TGAAAATAC ATTA GTATTTTCA TAGCTTAAGGTTTCC CLK_3229 80623 - 80835 + | hypothetical protein TERM 150 81019 - 81038 + G 76 -6.4 -4.58466 | opp_overlap 81018 GAATAATAAAAGAGT CCGGCT ATCTTTTA AGCCGG TTTTATAATTCTAAA TERM 151 82020 - 81993 - g 88 -8.8 -4.48483 | opp_overlap 81998 TATAATAAAGATAAA TATAATTATAAT GTAA ATTATAATTATA TAGAAACTAATATGA CLK_3230 80814 - 82262 + | Orn/Lys/Arg decarboxylase CLK_3231 82286 - 82981 + | putative thymidylate kinase TERM 152 83019 - 83009 - f 70 -2.6 -5.61596 | ACTTGTATAAAAAAA TATA AAA TATA GGTAAGAAACTACAA CLK_3232 83062 - 83391 + | hypothetical protein TERM 153 83635 - 83622 - g 81 -3.9 -5.5112 | opp_overlap 83622 CCTATTAATAAAAAA TCTAT AGGT ATAGA TGATATAAGAAACTT CLK_3233 83409 - 84353 + | putative DNA polymerase III, delta prime subunit TERM 154 85054 - 85037 - g 72 -6.3 -4.29325 | GATCAATAGTTAAAA CTCCTTA TGGA CAAGGAG AAGTAGTGGATAATA CLK_3234 84355 - 85269 + | PSP1 domain-containing protein CLK_3235 85281 - 85484 + | hypothetical protein CLK_3236 85566 - 85736 + | ferredoxin, 4Fe-4S TERM 155 85745 - 85774 + F 100 -14.5 -4.19276 | opp_overlap 85751 85753, overlap 85751 AGACTAATTTATTGT TAAAAAGGCCGTC AAAA GACGGTCTTTTTA TTCTTTATATATAAT TERM 156 85768 - 85751 - f 77 -6.9 -4.60041 | opp_overlap 85745 85751, overlap 85753 ATTTATTGTTAAAAA GGCCGTC AAAA GACGGTC TTTTTATTCTTTATA TERM 157 85751 - 85768 + F 100 -9.1 -5.42164 | opp_overlap 85751 85753, overlap 85745 ATTTATTGTTAAAAA GGCCGTC AAAA GACGGTC TTTTTATTCTTTATA TERM 158 85844 - 85834 - f 70 -2.6 -5.62045 | ACACAGAATAAAAAA TTAT TAT ATAA AAGGTGAATTATATG CLK_3237 85857 - 86597 + | hypothetical protein CLK_3238 86617 - 87471 + | tetrapyrrole methylase family protein TERM 159 87507 - 87476 - f 95 -10.6 -4.2028 | opp_overlap 87469 87486, overlap 87469 TAGATATATAAATAA TTTATTATATTTTT TAAT AAAAATATAATAAA TAACAAATTAAATTA CLK_3239 87627 - 88730 + | NlpC/P60 family protein TERM 160 88787 - 88754 - T 100 -10.5 -4.38141 | opp_overlap 88759, overlap 88751 88759 CTTTATATAAAATAA CGAAAGTGGAAACTA AAAT TAGTTTCCACTTTTA GCTTATATAAATAAA TERM 161 88782 - 88759 - T 100 -12.6 -4.23244 | opp_overlap 88759, overlap 88754 88751 TATAAAATAACGAAA GTGGAAACTA AAAT TAGTTTCCAC TTTTAGCTTATATAA TERM 162 88759 - 88782 + T 100 -12.6 -4.34267 | opp_overlap 88759 88754 88751 TATAAAATAACGAAA GTGGAAACTA AAAT TAGTTTCCAC TTTTAGCTTATATAA TERM 163 88791 - 88840 + T 75 -5.4 -4.99947 | gap 1, opp_overlap 88751 88808, overlap 88795 88808 TTTCCACTTTTAGCT TAT-ATAAATAAAAAAAAGCCCC TAGAT GAGGCTTTTTTTTATTTATTGTC TTTTATTTCATTAAG TERM 164 88795 - 88835 + T 100 -14.4 -4.13571 | opp_overlap 88808, overlap 88791 88808 CACTTTTAGCTTATA TAAATAAAAAAAAGCCCC TAGAT GAGGCTTTTTTTTATTTA TTGTCTTTTATTTCA TERM 165 88822 - 88808 - T 93 -4.9 -6.28967 | opp_overlap 88795 88791 88808 TATAAATAAAAAAAA GCCCC TAGAT GAGGC TTTTTTTTATTTATT TERM 166 88808 - 88822 + T 82 -2.7 -6.32017 | opp_overlap 88808, overlap 88795 88791 TATAAATAAAAAAAA GCCCC TAGAT GAGGC TTTTTTTTATTTATT CLK_3240 89074 - 88829 - | AbrB family transcriptional regulator TERM 167 89422 - 89400 - H 70 -4.3 -4.92783 | overlap 89391 89401 AATTTATTATAAAAA GTAATTTTA TAAAT TAAAACTAC AATACAATATAATAA CLK_3241 89880 - 90491 + | hypothetical protein TERM 168 90512 - 90566 + F 100 -20 -4.26076 | opp_overlap 90516, overlap 90516 90527 90564 TTTTGTGTATTTTTA TAGATCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGATTTA TTTTCGTAAAAGTAA TERM 169 90562 - 90516 - f 100 -14.2 -2.88544 | opp_overlap 90512 90516 90527 GTGTATTTTTATAGA TCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGA TTTATTTTCGTAAAA TERM 170 90516 - 90562 + F 100 -18.6 -4.72007 | opp_overlap 90516, overlap 90512 90527 GTGTATTTTTATAGA TCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGA TTTATTTTCGTAAAA TERM 171 90527 - 90551 + F 74 -5.9 -4.72386 | opp_overlap 90516, overlap 90516 90512 TAGATCACTTAAAAA GTTATTATTAA TCC TTAATAATGGC TTTTTAAGTGATTTA TERM 172 90704 - 90689 - f 73 -3.4 -5.57054 | opp_overlap 90689 90703, overlap 90701 90703 AATAATGTAAAAAAA TATATA TACA TATATA TTTATAAATTTAAGT arcA 90913 - 92124 + | arginine deiminase TERM 173 92137 - 92174 + T 81 -7.3 -4.77157 | gap 1, opp_overlap 92139 92142, overlap 92139 TAAAATATAAATTCA AATAAGAGTTCACTTATA AAT TA-AGGTGAACTCTTATA TTTTTGGTAAATTAA TERM 174 92172 - 92139 - T 86 -9.2 -3.93913 | gap 1, opp_overlap 92137 92139, overlap 92142 AAATATAAATTCAAA TAAGAGTTCAC-TTA TAAAT TAAGGTGAACTCTTA TATTTTTGGTAAATT TERM 175 92139 - 92172 + T 93 -9.9 -3.9993 | gap 1, opp_overlap 92139 92142, overlap 92137 AAATATAAATTCAAA TAAGAGTTCACTTATA AAT TA-AGGTGAACTCTTA TATTTTTGGTAAATT TERM 176 92169 - 92142 - T 71 -6.5 -4.06633 | gap 1, opp_overlap 92139 92137, overlap 92139 TATAAATTCAAATAA GAGTTCAC-TTA TAAAT TAAGGTGAACTC TTATATTTTTGGTAA ispF 92677 - 92210 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 177 92751 - 92735 - H 100 -10.9 -5.79526 | ATACTTTAAAAAAAA GTGCAAC AAA GTTGCAC CTTAAGATATATTTT TERM 178 92843 - 92831 - H 70 -3.5 -5.44119 | opp_overlap 92838, overlap 92838 TTTATTGTAAAAAAA TAAAA GCT TTTTA CGTAAAAAATTATGC CLK_3244 93413 - 94282 + | polysaccharide deacetylase family protein TERM 179 94540 - 94495 - T 84 -8.7 -4.33105 | opp_overlap 94498 94536, overlap 94498 TAATTATTAGTAAAA TAATATAACAGTTTATATTAC CTAG GAAATATAAACTATTATATTT TCATAAATATTTAAT TERM 180 94498 - 94537 + T 80 -8.2 -4.31412 | opp_overlap 94498 94495, overlap 94536 TTATTAGTAAAATAA TATAACAGTTTATATTAC CTAG GAAATATAAACTATTATA TTTTCATAAATATTT TERM 181 94537 - 94498 - T 95 -10.4 -4.27443 | opp_overlap 94498 94536, overlap 94495 TTATTAGTAAAATAA TATAACAGTTTATATTAC CTAG GAAATATAAACTATTATA TTTTCATAAATATTT CLK_3245 94793 - 94551 - | hypothetical protein TERM 182 94876 - 94888 + H 73 -3.5 -5.61881 | opp_overlap 94867 94876, overlap 94867 AACAAATATATCATA TATAT TAA ATATA TTTTTGTTTTTAAAA spmA 94913 - 95488 + | spore maturation protein A CLK_3247 95501 - 96019 + | spore maturation protein B CLK_3248 97601 - 96264 - | MATE efflux family protein TERM 183 96903 - 96923 + g 72 -4.2 -5.14698 | GTATTTCAAACGACT TATATTAA TGTTT TTAATATA TTTTATTTTAGGTTT udgA 97745 - 98317 + | uracil-DNA glycosylase CLK_3250 98346 - 98780 + | MarR family transcriptional regulator TERM 184 99095 - 99127 + F 100 -15.2 -5.1523 | opp_overlap 99093 99089 99126 ACAGCGAAATTTACG CCTCTATATAAAAC AAAAG GTTTTATATAGAGG TTTTTATATTATAAA TERM 185 100765 - 100753 - g 72 -4.9 -4.88295 | overlap 100745 AAATAAAGCTAAAAA TATAG CAC CTATA AAAGAAGAAATAACT metG 99161 - 101098 + | methionyl-tRNA synthetase TERM 186 101165 - 101129 - f 82 -9.6 -3.34629 | opp_overlap 101129 101133, overlap 101122 101133 ATACCAAATTAGGAA CTAAGCTGTTAACAAA TAAAT TTTGTTAGCAGCTTTG TTTTTGGTACATAAT TERM 187 101129 - 101165 + F 100 -11.8 -4.75372 | opp_overlap 101122 101129 101133, overlap 101133 ATACCAAATTAGGAA CTAAGCTGTTAACAAA TAAAT TTTGTTAGCAGCTTTG TTTTTGGTACATAAT TERM 188 101161 - 101133 - f 77 -9 -3.44222 | opp_overlap 101129 101133, overlap 101129 CAAATTAGGAACTAA GCTGTTAACAAA TAAAT TTTGTTAGCAGC TTTGTTTTTGGTACA TERM 189 101133 - 101161 + F 100 -11.2 -4.91852 | opp_overlap 101133 101129, overlap 101129 CAAATTAGGAACTAA GCTGTTAACAAA TAAAT TTTGTTAGCAGC TTTGTTTTTGGTACA CLK_3252 101263 - 102768 + | hypothetical protein TERM 190 102875 - 102855 - f 87 -7.1 -5.15526 | opp_overlap 102854 102856 ATAGAAAATGAAAAA TTATTAATA ATA TATTAATAA AGTTTAAAGAAAAAA TERM 191 103273 - 103261 - g 80 -6.3 -4.92385 | overlap 103272 GATATTCAAATAAAA GCTTT TAA AAAGC AAATGGAATTAGCAG CLK_3253 102919 - 103713 + | TatD family hydrolase CLK_3254 103940 - 104998 + | 3D/G5 domain-containing protein TERM 192 105005 - 105022 + F 100 -9.9 -5.80817 | opp_overlap 105004 105007 TTAGATTAATTTAAG TAGGAGC GTTA GCTCCTA TTTTTTTCTATTAAA CLK_3255 105071 - 105616 + | primase-related protein TERM 193 106030 - 106014 - g 73 -3.7 -5.30616 | overlap 106015 106026 TTACTTAAAGAAAAA TGTGATT TTA AATCACT AACCATAATGATACA TERM 194 106029 - 106015 - g 71 -7.2 -3.77285 | overlap 106014 106026 TACTTAAAGAAAAAT GTGATT TTA AATCAC TAACCATAATGATAC ksgA 105618 - 106445 + | dimethyladenosine transferase TERM 195 107431 - 107417 - g 81 -2.9 -5.68438 | TGATGAAATAAAAAA TTGTA TTTGG TACAA AATAGATGCTAAAGA CLK_3257 106524 - 107747 + | hypothetical protein TERM 196 107745 - 107770 + F 88 -6.9 -5.57729 | opp_overlap 107747, overlap 107747 TTAATACCTGTTAAA TAGGGGCATGT TAAT ACATGTCTCTG TTTTTTATGTTGTTT TERM 197 107747 - 107768 + F 77 -7.3 -4.38219 | opp_overlap 107747, overlap 107745 AATACCTGTTAAATA GGGGCATGT TAAT ACATGTCTC TGTTTTTTATGTTGT CLK_3258 107904 - 108491 + | hypothetical protein TERM 198 108517 - 108567 + F 75 -5.4 -4.91712 | opp_overlap 108537 108546 GTATCGAAGTTGATA TGCTCCCCTTAAGGAAGATAGATT AAA AATCTGCTATCGCAAAGGGGAGCA TTTTTGTGCATTAAG TERM 199 109304 - 109279 - g 71 -5.7 -4.42748 | gap 1, overlap 109276 109296 TGACTTGAAAAATAA CTTTAATAATGT AGA AC-TTATTAAAG ATAATAATGCCAATC CLK_3259 108659 - 109492 + | putative lipoprotein TERM 200 109542 - 109498 - f 83 -7.9 -4.65747 | opp_overlap 109483 109499 109511, overlap 109500 109511 GAATTTTTAATAAAA GATTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAAAT AAATTAATTATAGGA TERM 201 109499 - 109541 + F 91 -13.6 -2.62043 | opp_overlap 109498 109500 109511, overlap 109483 109511 AATTTTTAATAAAAG ATTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAAA TAAATTAATTATAGG TERM 202 109540 - 109500 - f 100 -14.9 -3.93768 | opp_overlap 109483 109499 109511, overlap 109498 109511 ATTTTTAATAAAAGA TTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAA ATAAATTAATTATAG TERM 203 109529 - 109511 - f 93 -10.2 -4.09511 | opp_overlap 109499 109511, overlap 109500 109498 AAGATTCTTGTAAAA CCCCATGC ATT GCGTGGGG TTTTGCAAAAAATAA TERM 204 109511 - 109529 + F 100 -12.4 -4.08216 | opp_overlap 109511 109500 109498, overlap 109499 AAGATTCTTGTAAAA CCCCATGC ATT GCGTGGGG TTTTGCAAAAAATAA CLK_3260 109660 - 110721 + | RND family marcrolide efflux protein CLK_3261 110732 - 111427 + | putative macrolide efflux ABC transporter, ATP-binding protein CLK_3262 111424 - 112632 + | putative macrolide efflux ABC transporter, permease protein CLK_3263 112714 - 113556 + | ATPase TERM 205 113548 - 113603 + F 100 -24 -3.65313 | opp_overlap 113548 113554, overlap 113554 113599 113600 AACTTTAAAAATTTA TATAAATAGTAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTATTTATA TTTAAAATATAGTTA TERM 206 113603 - 113548 - f 100 -19.6 -2.85019 | opp_overlap 113548 113554 113599 113600, overlap 113554 AACTTTAAAAATTTA TATAAATAGTAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTATTTATA TTTAAAATATAGTTA TERM 207 113554 - 113597 + F 100 -18.6 -4.33928 | opp_overlap 113548 113554, overlap 113548 AAAAATTTATATAAA TAGTAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTA TTTATATTTAAAATA TERM 208 113597 - 113554 - f 100 -14.2 -4.13805 | opp_overlap 113554 113548, overlap 113548 AAAAATTTATATAAA TAGTAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTA TTTATATTTAAAATA CLK_3264 113696 - 113887 + | iron-sulfur cluster-binding protein CLK_3265 114508 - 114332 - | hypothetical protein TERM 209 115187 - 115171 - g 82 -6.7 -4.95167 | CAATTAATAATAAAA TCTTTTA TGA TAAAAGA AGAATTAATACATAA CLK_3266 114586 - 115656 + | putative diguanylate cyclase CLK_3267 115713 - 116441 + | mgtC family protein TERM 210 116449 - 116492 + F 100 -17.3 -5.31275 | opp_overlap 116449 TATTATGATGAAAAA TAACAAGAACATATATTTT TAAAAT AAAATATATGTTCTTGTTA TTTTTTGTAGTAAAA TERM 211 116492 - 116449 - f 100 -17.3 -4.78107 | opp_overlap 116449 TATTATGATGAAAAA TAACAAGAACATATATTTT TAAAAT AAAATATATGTTCTTGTTA TTTTTTGTAGTAAAA TERM 212 117821 - 117799 - g 72 -7.8 -3.67296 | TATTATTTATTTAAA TTAGCTGCTA AAA TAGCAGGTAA GAGAATGAATCCTAC TERM 213 118115 - 118105 - g 76 -2.6 -5.54894 | AATGTACTAAAAAAA TTAA GAG TTAA AGATTTACCTTTTGT nrdD 116731 - 118872 + | anaerobic ribonucleoside-triphosphate reductase nrdG 118889 - 119404 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 214 119504 - 119462 - T 100 -18.2 -3.15677 | opp_overlap 119462 119467, overlap 119467 TAGATAACTATTTAA TAAAAGGGTGTATAACTTTA AAA TAAAGTTATATACCCTTTTA TTGTCTACAAGAAAA TERM 215 119462 - 119504 + T 100 -20.4 -3.48276 | opp_overlap 119462 119467, overlap 119467 TAGATAACTATTTAA TAAAAGGGTGTATAACTTTA AAA TAAAGTTATATACCCTTTTA TTGTCTACAAGAAAA TERM 216 119499 - 119467 - T 100 -13.7 -4.69656 | opp_overlap 119467 119462, overlap 119462 AACTATTTAATAAAA GGGTGTATAACTTTA AAA TAAAGTTATATACCC TTTTATTGTCTACAA TERM 217 119467 - 119499 + T 100 -15.9 -4.84311 | opp_overlap 119462 119467, overlap 119462 AACTATTTAATAAAA GGGTGTATAACTTTA AAA TAAAGTTATATACCC TTTTATTGTCTACAA TERM 218 119649 - 119620 - T 100 -10.9 -5.1848 | opp_overlap 119623 AACGAAGTGAAAAAA GAATAGAAAGCAA GCTA TAGCTTTCTATTC TACGGTTTAAGCTAT CLK_3270 119802 - 119656 - | hypothetical protein CLK_3271 120616 - 119936 - | hypothetical protein TERM 219 120008 - 120018 + g 70 -4 -4.9218 | opp_overlap 120008 TGCTATAAAAATTAA TACA TAG TGTA TTTTTGTAGTAAATA TERM 220 120344 - 120355 + g 71 -3 -5.28481 | GTTAACTATAACATT TTCT TTAG AGAA TTTTTTAGTTGCATA CLK_3272 120956 - 120618 - | PadR family transcriptional regulator TERM 221 121079 - 121055 - R 93 -7.3 -5.77677 | overlap 121045 TAAAATAATAAAAAA TAGCTATTTTT ATT ACAAATAGCTA AATCATATTAAGTAT CLK_3273 121715 - 121077 - | putative zinc-dependent hydrolase TERM 222 121190 - 121202 + g 74 -6.3 -4.41882 | GAATTAAAAAAGCTT CTAGA CCA TCTAG TTTAATTTTTATATT TERM 223 122086 - 122107 + H 89 -4.4 -5.99154 | overlap 122077 GTATAGCGAATGTAA CTTCGTCC TATTAT GGATGGAG TTTTTTTGTTTAATA ileS 122157 - 125273 + | isoleucyl-tRNA synthetase TERM 224 125286 - 125320 + F 100 -10.3 -5.58179 | opp_overlap 125283 125284, overlap 125283 125288 125297 TAGTACGTATAATTT TATGCATAGAATAAA AATTG TTTATTCTATGCACA TTTTTTATTATAATA TERM 225 125288 - 125318 + F 93 -12.9 -2.94342 | opp_overlap 125283 125284, overlap 125283 125286 125297 GTACGTATAATTTTA TGCATAGAATAAA AATTG TTTATTCTATGCA CATTTTTTATTATAA TERM 226 125926 - 125913 - g 74 -6.7 -4.3487 | overlap 125916 ATAGATAATTTAAAA GCATC TCTA GATGC TACAGAATACTTAAT TERM 227 126154 - 126132 - g 76 -5 -5.02201 | AAAATATTAGAAAAA GAAAAAATAG ATG CTATTTTTTG TGCTGATGATGAAAT CLK_3275 125424 - 126422 + | LacI family transcription regulator TERM 228 130203 - 130217 + G 76 -2.9 -5.60689 | CAGCAAGCAGAGCTA GAAAT CAAAT ATTTC TTTTTTATTCTATAG CLK_3276 126638 - 130690 + | hypothetical protein CLK_3277 130765 - 131832 + | putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 229 131870 - 131837 - f 75 -4 -5.46276 | opp_overlap 131837 AATATATATAAAAAA TAGTATGGATATTA TTTTTT TGATATCCATGCTA TTTTTTATATTTTCA TERM 230 131837 - 131870 + F 100 -8.4 -5.63645 | opp_overlap 131837 AATATATATAAAAAA TAGTATGGATATTA TTTTTT TGATATCCATGCTA TTTTTTATATTTTCA CLK_3278 132168 - 133481 + | hypothetical protein CLK_3279 133486 - 134292 + | hypothetical protein CLK_3280 134312 - 135058 + | hypothetical protein TERM 231 135075 - 135103 + F 100 -14.9 -5.83822 | opp_overlap 135075 135078 TATTATTACTTTAAA TAACTTAGTGATT TTA AATCACTAAGTTA TTTTTTTTGAATATA TERM 232 135103 - 135075 - f 100 -14.9 -3.62572 | opp_overlap 135075, overlap 135078 TATTATTACTTTAAA TAACTTAGTGATT TTA AATCACTAAGTTA TTTTTTTTGAATATA TERM 233 135100 - 135078 - f 100 -12.2 -3.94634 | opp_overlap 135075, overlap 135075 TATTACTTTAAATAA CTTAGTGATT TTA AATCACTAAG TTATTTTTTTTGAAT TERM 234 135835 - 135823 - g 71 -4.9 -4.76041 | opp_overlap 135817 135823 GATATTTATGAAAAA TACAA CGA TTGTA TTTTTATGCCTTTTA TERM 235 135823 - 135835 + G 72 -4.9 -4.97402 | opp_overlap 135823, overlap 135817 GATATTTATGAAAAA TACAA CGA TTGTA TTTTTATGCCTTTTA TERM 236 136546 - 136528 - g 70 -6 -4.21142 | ATGCCAACAGATAAA GGAGCA GAAATGA TGCTCC ATGATGAAGTATTTA CLK_3281 135283 - 136665 + | radical SAM domain-containing protein TERM 237 136691 - 136714 + F 100 -9 -5.12474 | opp_overlap 136691 TTTTATATAAATTAA GGTATTTCAT TTTA ATGAGATACC TTTTTATCTATTCTA TERM 238 137512 - 137479 - g 79 -5.5 -5.01811 | opp_overlap 137487 TTATTAAATGAAAAA GGAATTTACTATTTT GATA AAGATAGTAAATTAC AAATAGATCAACCTG CLK_3282 136852 - 138126 + | putative sugar-binding protein TERM 239 138164 - 138146 - T 73 -3.3 -5.46276 | opp_overlap 138146 AAGACATATAAAAAA TATAATT TTATT AATTATA TATTTACATTAAAAA TERM 240 138188 - 138217 + T 100 -8.8 -5.57729 | opp_overlap 138188 TTAAAAAGTATTTAA GAGTCAAAATTT AGGAAA AAATTTTGGCTC TTTTTTATATTATTT CLK_3283 139342 - 138227 - | putative mannosyltransferase TERM 241 138423 - 138409 - G 72 -8.6 -2.98453 | overlap 138408 138411 TATTAATACAACAAT CAGAAG TAA CTTCTG GAATAGAGGTAACGT TERM 242 138511 - 138495 - G 100 -10.9 -4.19238 | GGTGGAAGTCCAAAA CCCTCAT ATA ATGAGGG GTAAATAAATACACT CLK_3284 139506 - 140516 + | putative spore coat protein TERM 243 140640 - 140621 - g 74 -2.2 -5.65513 | CAGGAATTAAAAAAA TCTGTTAA AAAA TTAAAAGA AATAAAGAAAAAAAA CLK_3285 140531 - 140725 + | hypothetical protein CLK_3286 140752 - 141519 + | hypothetical protein CLK_3287 141532 - 142545 + | putative spore coat protein TERM 244 142583 - 142620 + T 80 -6.5 -5.08483 | opp_overlap 142583 TTAAATAAATATAAA CACTATCAAATTATTTT ATTA AATGAAATTTGATAGTG TTTTCTTTAATTTTA TERM 245 142720 - 142694 - T 75 -8.8 -3.21225 | opp_overlap 142694, overlap 142687 CTAAAAATTATTTAA GACTCCAGTT AAGGGGG AACTGGAGCC TAATTAGAGCATAGT CLK_3288 143847 - 142720 - | glycosyl transferase, group 1 family protein TERM 246 144031 - 144021 - g 71 -6.8 -4.00407 | ATTGAAAAACTTAAA CCTC ATA GAGG AGTGTATCATTTAAA cotS 143964 - 144968 + | spore coat protein CotS TERM 247 144972 - 145019 + F 77 -6.7 -4.64334 | gap 1, opp_overlap 144973 144977, overlap 144973 144977 CAAAAAGAATAATGA ATATATTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA-ATAG TTTTATTAACAAATT TERM 248 144973 - 145018 + F 87 -10.2 -3.37877 | gap 1, opp_overlap 144973 144977, overlap 144972 144977 AAAAAGAATAATGAA TATATTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA-ATA GTTTTATTAACAAAT TERM 249 144977 - 145015 + F 91 -13.5 -2.54841 | opp_overlap 144973 144977, overlap 144973 144972 AGAATAATGAATATA TTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA ATAGTTTTATTAACA TERM 250 145015 - 144977 - f 75 -9.1 -3.23854 | opp_overlap 144977 144973 144972, overlap 144973 AGAATAATGAATATA TTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA ATAGTTTTATTAACA TERM 251 145468 - 145451 - g 70 -8.5 -3.11073 | overlap 145450 GAGGCCAGGTAAAAT TCTCCAT ATAG ATGGAGA CTCAGAATACTTAGA CLK_3290 145092 - 145994 + | peptidase family protein CLK_3291 145987 - 146154 + | hypothetical protein TERM 252 146298 - 146287 - g 71 -3 -5.31855 | GAGGAAGAAGAAAAA CATT TGTT AATG AAGGTGTACTAGAAG CLK_3292 146190 - 146426 + | hypothetical protein TERM 253 146452 - 146432 - f 83 -11.3 -2.72152 | opp_overlap 146432, overlap 146429 TGTATTATAAATGGA TTGGTACTT AAT AAGTACCAA TTTTTTTTTTTTTAT TERM 254 146432 - 146452 + F 100 -11.3 -7.00209 | opp_overlap 146429 146432 TGTATTATAAATGGA TTGGTACTT AAT AAGTACCAA TTTTTTTTTTTTTAT CLK_3293 146530 - 148092 + | LysM domain-containing protein TERM 255 148220 - 148179 - f 77 -3.2 -5.76237 | opp_overlap 148178 148180, overlap 148180 TATATAAATAAAAAA GCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGT ATTTTTGTGCATAAA TERM 256 148180 - 148219 + F 82 -8.9 -4.06182 | opp_overlap 148179 148180, overlap 148178 ATATAAATAAAAAAG CTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAG TATTTTTGTGCATAA TERM 257 148219 - 148180 - f 71 -6.7 -4.03302 | opp_overlap 148180 148178, overlap 148179 ATATAAATAAAAAAG CTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAG TATTTTTGTGCATAA TERM 258 148319 - 148303 - g 73 -3.7 -5.27335 | overlap 148313 TTTTGCAAAGAAAAA TACAAGG TAA CCTCATA ATCATAGGAGGAGCT cphB 148290 - 149090 + | cyanophycinase cphA 149134 - 151755 + | cyanophycin synthetase TERM 259 151758 - 151797 + F 100 -12.6 -5.62219 | gap 1, opp_overlap 151758 151763 AGCTTTAGCATAGGA TTAAAGCTACAATTTATGA ATA TCATGA-TTGTAGCTTTAA TTTTTTTGATGTATT TERM 260 151797 - 151758 - f 81 -10.4 -2.66435 | gap 1, opp_overlap 151758, overlap 151763 AGCTTTAGCATAGGA TTAAAGCTACAATTTATGA ATA TCATGA-TTGTAGCTTTAA TTTTTTTGATGTATT TERM 261 151920 - 151908 - g 71 -3.4 -5.32396 | opp_overlap 151908 151917, overlap 151903 151919 ATAGGAAAAAGAAAA GATG GATAT CATC TTTTAAAGATGTTAA ispE 151848 - 152690 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 262 152700 - 152737 + F 100 -8.9 -6.19302 | gap 1, opp_overlap 152700 152703 ATATAATAGTTGAAA GATCATATAAATATATTT TTA AAAT-TATTTATATGGTC TTTTTTTTATTATCT TERM 263 152822 - 152770 - f 100 -14.4 -4.04206 | gap 1, opp_overlap 152771 152772 152774, overlap 152772 152775 CTATTTGTATATAAA CAGAGTTCTTGGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC-G TTATCCAGGGACGTA TERM 264 152771 - 152822 + F 100 -16.8 -3.28924 | opp_overlap 152770 152772 152775, overlap 152772 152774 TATTTGTATATAAAC AGAGTTCTTGGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATCG TTATCCAGGGACGTA TERM 265 152821 - 152772 - f 100 -18.1 -3.615 | opp_overlap 152771 152772 152774, overlap 152770 152775 ATTTGTATATAAACA GAGTTCTTGGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 266 152772 - 152821 + F 100 -20.3 -2.57211 | opp_overlap 152772 152770 152775, overlap 152771 152774 ATTTGTATATAAACA GAGTTCTTGGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 267 152774 - 152819 + F 100 -17.1 -2.82623 | opp_overlap 152772 152770 152775, overlap 152772 152771 TTGTATATAAACAGA GTTCTTGGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAA TCGTTATCCAGGGAC TERM 268 152818 - 152775 - f 100 -18.4 -2.62495 | opp_overlap 152774 152772 152771, overlap 152772 152770 TGTATATAAACAGAG TTCTTGGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAA ATCGTTATCCAGGGA TERM 269 153005 - 153017 + G 76 -3.5 -5.48054 | GAAGAATAATAGGCA TATTT GAT AAATA TTTTTTAATTTTAAT CLK_3297 152986 - 153183 + | hypothetical protein TERM 270 153326 - 153307 - g 72 -5.1 -4.80289 | opp_overlap 153307 ATAAAATATATAAAA GAATTAC TGGAAG GTAATTC TGATATGGTTTTTAG CLK_3298 153244 - 154764 + | spore germination protein TERM 271 155583 - 155555 - g 76 -6.9 -4.51699 | overlap 155547 ATAACCATGATAAAA TCAATAGATATAC CAG GTACATTTATTGA AAGATGGGAGGGTAT CLK_3299 154784 - 155881 + | spore germination protein CLK_3300 155931 - 157112 + | Ger(x)C family germination protein CLK_3301 157186 - 157818 + | stage II sporulation protein R TERM 272 157849 - 157825 - T 87 -7.3 -5.15682 | opp_overlap 157823 157825 AAAAGATAAATAAAA CTCTGTATT TGAAAAT AATACAGAG TAATTTTATAATAAA CLK_3302 159096 - 157855 - | hypothetical protein ypeB 159469 - 160839 + | germination protein YpeB TERM 273 160883 - 160852 - f 100 -11.9 -4.35874 | opp_overlap 160852 160856, overlap 160856 TAATATAATTTAAAA TAAAGAGTGAATA ATAGTG TATTCACTCTTTA TTTGTATTATAATAA TERM 274 160852 - 160883 + F 100 -11.9 -4.29304 | opp_overlap 160852 160856, overlap 160856 TAATATAATTTAAAA TAAAGAGTGAATA ATAGTG TATTCACTCTTTA TTTGTATTATAATAA TERM 275 160856 - 160879 + F 85 -8.3 -4.70921 | opp_overlap 160852 160856, overlap 160852 ATAATTTAAAATAAA GAGTGAATA ATAGTG TATTCACTC TTTATTTGTATTATA TERM 276 160879 - 160856 - f 85 -8.3 -4.73092 | opp_overlap 160856 160852, overlap 160852 ATAATTTAAAATAAA GAGTGAATA ATAGTG TATTCACTC TTTATTTGTATTATA CLK_3304 160942 - 161922 + | hypothetical protein TERM 277 161923 - 161911 - f 73 -3.5 -5.48825 | GATTATTTAAAAAAA TTTAT AAT ATAAA TATAAGGAAAAGGAA CLK_3305 161947 - 162375 + | hypothetical protein CLK_3306 162507 - 162806 + | hypothetical protein pyrG 163040 - 164641 + | CTP synthase TERM 278 164684 - 164722 + F 80 -2.7 -6.04953 | gap 1, overlap 164687 TATGTTAATAAAGAA CACCATCAGAATT-TATA GAAA TATATAATTTTGGTGTTG TTTTTTTATTTATAT CLK_3308 164908 - 165252 + | hypothetical protein TERM 279 165248 - 165277 + F 77 -5.1 -5.4433 | overlap 165252 AAATATATATGATGG TTTAGAGTAACTT TTAA AAGTTACTCTTTA TTTTTATTTATATAT TERM 280 165252 - 165273 + F 100 -10.3 -5.1502 | overlap 165248 ATATATGATGGTTTA GAGTAACTT TTAA AAGTTACTC TTTATTTTTATTTAT rho 165424 - 166869 + | transcription termination factor Rho TERM 281 166878 - 166906 + T 100 -14.9 -2.85565 | opp_overlap 166878 166883, overlap 166883 166903 TAAATAGAAAATAAA TAAAACCTAATCT GAA AGATTAGGTTTTA TACTATTTAACGTCT TERM 282 166906 - 166878 - T 100 -14.9 -4.91778 | opp_overlap 166878 166883 166903, overlap 166883 TAAATAGAAAATAAA TAAAACCTAATCT GAA AGATTAGGTTTTA TACTATTTAACGTCT TERM 283 166883 - 166901 + T 100 -10.4 -4.58303 | opp_overlap 166883 166878, overlap 166878 AGAAAATAAATAAAA CCTAATCT GAA AGATTAGG TTTTATACTATTTAA TERM 284 166901 - 166883 - T 100 -10.4 -5.28281 | opp_overlap 166878 166883, overlap 166878 AGAAAATAAATAAAA CCTAATCT GAA AGATTAGG TTTTATACTATTTAA rpmE 167127 - 166909 - | ribosomal protein L31 tdk 167354 - 167929 + | thymidine kinase TERM 285 168571 - 168581 + G 70 -4 -4.95876 | ATCCAAGATGTGGAA CAAA TTT TTTG TTTTTAGTTATGATT CLK_3312 167946 - 168863 + | hypothetical protein CLK_3313 168871 - 169722 + | HemK family modification methylase TERM 286 170415 - 170391 - g 76 -10.1 -2.59927 | opp_overlap 170378 170390 170393, overlap 170378 AAGCGGTAGAATTCA TACTTCTACAG CTA CTGTAGCAGTA CTTCCTGAGGTAGAT prfA 169804 - 170880 + | peptide chain release factor 1 CLK_3315 170908 - 171516 + | hypothetical protein TERM 287 172055 - 172045 - g 86 -5.4 -5.64006 | opp_overlap 172045 172043 172048, overlap 172047 172048 ATCTAATGAAAAAAA GAGT AAA ACTC TGTTTTATGTTTTTC CLK_3316 171575 - 172294 + | ZIP transporter family protein CLK_3317 172315 - 173370 + | Sua5/YciO/YrdC/YwlC family protein CLK_3318 173379 - 173831 + | low molecular weight protein tyrosine phosphatase rpiB 173891 - 174328 + | ribose 5-phosphate isomerase B upp 174358 - 174987 + | uracil phosphoribosyltransferase TERM 288 175057 - 175104 + F 100 -8.3 -5.37043 | opp_overlap 175057 175061 175064 AATACTTTTAGTAAA TAGATAACTATAAAAATAA AGGATAATAA TTATTTTTATAGTTATTTA TTTTTTCTATAAGAT TERM 289 175709 - 175696 - g 74 -6.7 -4.28656 | AGGGAAGAGCTAAAA GTACC TCGT GGTAC TAGATATGAATTGTG CLK_3321 175501 - 175989 + | cytidine/deoxycytidylate deaminase family protein TERM 290 176260 - 176235 - g 86 -6.2 -5.35222 | overlap 176236 AAAATTCATAAAAAA CCTATACCAC TTTTAG GTGGTATAGC AATATATATATCTTT TERM 291 176259 - 176236 - g 86 -9.7 -3.78693 | overlap 176235 AAATTCATAAAAAAC CTATACCAC TTTTAG GTGGTATAG CAATATATATATCTT TERM 292 176493 - 176508 + G 71 -4.8 -4.81551 | opp_overlap 176493 GATCACCTTAACTTA TATGTA GGAT TACATA TTTTTGCTATACCTA tagO 176097 - 177131 + | UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase mnaA 177145 - 178302 + | UDP-N-acetylglucosamine 2-epimerase TERM 293 178557 - 178537 - f 70 -2.7 -5.59564 | opp_overlap 178540 178542, overlap 178540 178549 ATAAATTTAAAAAAA TAGTATAAA TAA TTTATATTA AATAGAATATTGCGA TERM 294 178918 - 178941 + G 74 -8.4 -3.55824 | opp_overlap 178917 178920, overlap 178911 178915 TTTGTTTTTTAATAG GATTAATATT AGCT AATATTAATC TATTTATAAATGCTA CLK_3324 178794 - 179162 + | putative ATP synthase protein I TERM 295 179585 - 179598 + G 76 -5.3 -5.05606 | AGTTATTTTCTAGGA TATGG TAAG CCATA TTTATTTTTATTGCC atpB 179177 - 179857 + | ATP synthase F0, A subunit atpE 179897 - 180136 + | ATP synthase F0, C subunit TERM 296 180188 - 180142 - f 90 -11.3 -3.20878 | opp_overlap 180147, overlap 180147 180155 TAAGATTTAAGGTAA TTTAATTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAATTTAA GGCCGAAGGGAGGCT TERM 297 180183 - 180147 - f 90 -11.2 -3.20991 | opp_overlap 180147, overlap 180142 180155 TTTAAGGTAATTTAA TTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAA TTTAAGGCCGAAGGG TERM 298 180147 - 180183 + F 100 -13.4 -3.53012 | opp_overlap 180147 180142 180155 TTTAAGGTAATTTAA TTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAA TTTAAGGCCGAAGGG atpF 180212 - 180691 + | ATP synthase F0, B subunit TERM 299 180903 - 180918 + G 77 -4.8 -5.19251 | overlap 180906 TAAAGATAAAGTGGA TGATAA AATT TTATCA TTTTTATTAGTATTA atpH 180694 - 181233 + | ATP synthase F1, delta subunit atpA 181244 - 182758 + | ATP synthase F1, alpha subunit TERM 300 183305 - 183320 + G 82 -7.6 -4.45544 | TCAGAGTTTTATTCA CCTGTT AAGC AACAGG TTTTAATTAATAAAA atpG 182780 - 183628 + | ATP synthase F1, gamma subunit atpD 183642 - 185033 + | ATP synthase F1, beta subunit atpC 185058 - 185459 + | ATP synthase F1, epsilon subunit TERM 301 185473 - 185528 + F 100 -18.1 -5.65177 | opp_overlap 185481 AGAGAAAATTTTATA GCTTACAAGGTATACATAACTTT GACATTAAAA AATGTTATGTATACCTTGTAAGC TTTTTTTGTAAGTAT TERM 302 186043 - 186033 - g 70 -4 -4.97158 | overlap 186028 TTACATTAAATAAAA GTTT TAT AAAC TTAAAAAATAATTTA CLK_3333 185654 - 186361 + | hypothetical protein murA 186385 - 187641 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 303 187669 - 187692 + F 95 -8.2 -5.27206 | opp_overlap 187669 GTGTATGATAAATAA CTCATGGTGA TTAT TCGCTATGAG TTTTTATTATATATA spoIID 187887 - 188963 + | stage II sporulation protein D CLK_3336 189368 - 190096 + | putative peptidase TERM 304 190134 - 190103 - f 74 -8.7 -2.99381 | AAATATTAATAAGGA TGCCATTTTCCGC TTTTAT GCGGAAAGTGGCT AAATATAAATGAATT spoIIID 190204 - 190458 + | stage III sporulation protein D CLK_3338 190558 - 191586 + | mbl protein TERM 305 191654 - 191622 - T 100 -12.9 -4.62984 | opp_overlap 191622 191623, overlap 191623 TGACTACACATAAAA CTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAA TTTTTATATTGATGT TERM 306 191622 - 191654 + T 100 -10.7 -5.13344 | opp_overlap 191622 191623, overlap 191623 TGACTACACATAAAA CTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAA TTTTTATATTGATGT TERM 307 191653 - 191623 - T 100 -14.2 -3.37067 | opp_overlap 191622 191623, overlap 191622 GACTACACATAAAAC TAAAGCTCTTGAGT AAT ACTCATGAGCTTTA ATTTTTATATTGATG TERM 308 191623 - 191653 + T 100 -14.2 -3.6638 | opp_overlap 191623 191622, overlap 191622 GACTACACATAAAAC TAAAGCTCTTGAGT AAT ACTCATGAGCTTTA ATTTTTATATTGATG CLK_3339 192235 - 191711 - | hypothetical protein TERM 309 192245 - 192276 + r 87 -10.4 -3.24423 | opp_overlap 192243 192242 192258 ATTCAAAACACACCC CTCCTTATATTAAT ATAT ATGAATATAAGGAG TTAAATATTATTGGA CLK_3340 193006 - 192284 - | hypothetical protein TERM 310 192847 - 192877 + g 74 -2.1 -5.53991 | gap 1, opp_overlap 192854, overlap 192849 192854 ATGTTATAGCTATTA AATCAAA-TTTTTC AGGA GAAAAACTTTGATA TTTTTTTAGTAGATG TERM 311 193025 - 193068 + H 71 -8.6 -3.07895 | opp_overlap 193035 193039, overlap 193027 193035 193035 193037 ATTCCTCCCTAGTAT TATGTATAAATTTATATTAT AAAT ATATTATAAATTAATACATA TATATTACAAATAAA TERM 312 193697 - 193675 - H 95 -12.2 -3.72576 | opp_overlap 193675 TCCTCCTCCACCAAA CATCTTTACT TAA AGTAAAGATG TTTTTATTTTGCATT TERM 313 193675 - 193697 + H 100 -12.2 -5.49568 | opp_overlap 193675 TCCTCCTCCACCAAA CATCTTTACT TAA AGTAAAGATG TTTTTATTTTGCATT TERM 314 193822 - 193810 - g 76 -6.3 -4.5815 | AATAAAAATAAAGAA CTCTT ATC AAGAG AGGTGGAGGGAAAAG CLK_3345 193774 - 193908 + | hypothetical protein TERM 315 193925 - 193953 + F 82 -4.6 -5.75342 | opp_overlap 193930, overlap 193930 AGAGAGTAGTTAGAC AATAACCTCTTC TTATT GAAGAGGTTTTA TTTTTTTTAGACAAA TERM 316 193948 - 193930 - f 81 -8.9 -3.8969 | opp_overlap 193925 193930 GTAGTTAGACAATAA CCTCTTC TTATT GAAGAGG TTTTATTTTTTTTAG TERM 317 193930 - 193948 + F 100 -8.9 -5.66926 | opp_overlap 193930, overlap 193925 GTAGTTAGACAATAA CCTCTTC TTATT GAAGAGG TTTTATTTTTTTTAG TERM 318 194492 - 194480 - g 90 -6.3 -5.57396 | opp_overlap 194478 194480 AGAAGTAAGAAAAAA TGGTA CAT TACCA TATTTAAGACCAGAT metK 193992 - 195167 + | S-adenosylmethionine synthetase TERM 319 195187 - 195225 + F 100 -9.1 -5.19212 | gap 1, opp_overlap 195193, overlap 195193 ATATTAGTATTAATA TGAAAAGGAATGGACATG ATAA CATG-CCATTCCTTTATA TTTTTTCATAATAAT TERM 320 195219 - 195193 - f 100 -10.3 -4.44797 | gap 1, opp_overlap 195187 195193 GTATTAATATGAAAA GGAATGGACATG ATAA CATG-CCATTCC TTTATATTTTTTCAT TERM 321 195193 - 195219 + F 100 -10.3 -4.66347 | gap 1, opp_overlap 195193, overlap 195187 GTATTAATATGAAAA GGAATGGACATG ATAA CATG-CCATTCC TTTATATTTTTTCAT TERM 322 195296 - 195281 - f 85 -6.2 -5.46698 | opp_overlap 195281 GCTAAAATTAAAAAA GTATAG ATTC CTATAC TTATAAGCAGCGGTA CLK_3347 195358 - 197592 + | RecD/TraA family helicase CLK_3348 197618 - 198640 + | hypothetical protein TERM 323 199201 - 199212 + GF 75 -5.8 -4.81814 | opp_overlap 199201 GATGTTTTAACCACA GGAG CGAC CTCC TTTTATTGTGCTAAT CLK_3349 198613 - 199290 + | comF protein,-like protein TERM 324 199518 - 199546 + F 91 -8.3 -4.93898 | opp_overlap 199521 CTAATTTTAACTAAT TGAGGCTTATAGT ATA ACTATAGGTCTTA TTTTTATAATAATAT TERM 325 199816 - 199834 + G 70 -8.2 -3.12351 | ATTTTTCAACCCTGA TGTAGTTG CAA CAGCTACA TTGAGTGTACACAAA yfiA 199715 - 200242 + | ribosomal subunit interface protein TERM 326 200280 - 200307 + F 100 -10.1 -4.99035 | opp_overlap 200280 AAAGAATTAGTAAAA GTAGACATATA CAAGGA TATATGTCTAC TTTTTATATAGATAA TERM 327 200307 - 200280 - f 100 -10.8 -4.40037 | opp_overlap 200280 AAAGAATTAGTAAAA GTAGACATATAC AAGG ATATATGTCTAC TTTTTATATAGATAA secA 200470 - 202977 + | preprotein translocase, SecA subunit TERM 328 204147 - 204137 - g 88 -4 -5.72622 | CTCATAAAGAAAAAA TAGA AGA TCTA ACAGGAGAACTAAAG prfB 203341 - 204324 + | peptide chain release factor 2 CLK_3353 205973 - 204621 - | peptidase family protein TERM 329 204763 - 204781 + g 100 -11.8 -4.90296 | opp_overlap 204765 TTTATAATTTTTAAT GATGCTAC ATT GTAGCATC TTTTTATAGAATTTT TERM 330 204779 - 204765 - G 71 -8.6 -2.74019 | opp_overlap 204763 TATAATTTTTAATGA TGCTAC ATT GTAGCA TCTTTTTATAGAATT TERM 331 207300 - 207317 + G 70 -5.5 -4.33417 | opp_overlap 207299, overlap 207302 ATTATGTTATAGTAT CTGAAGC TGGA GCTTCTG TTTATTCTGCATCAA CLK_3354 206081 - 208237 + | RNA-binding protein TERM 332 208446 - 208467 + F 100 -13.1 -5.93252 | opp_overlap 208446 AACTGTGATTACAAA GCCCTGATA TTAT TATCAGGGC TTTTTTATTTTTCAC TERM 333 208467 - 208446 - f 100 -13.1 -3.96892 | opp_overlap 208446 AACTGTGATTACAAA GCCCTGATA TTAT TATCAGGGC TTTTTTATTTTTCAC CLK_3355 208522 - 209115 + | riboflavin transporter TERM 334 209262 - 209297 + F 83 -6.4 -5.22006 | opp_overlap 209264, overlap 209264 TGTAAAATTTATAAT AACTGATTAAATAG CCATTATT CTATTTAATCAGTA TTTTTATTATGCTAA TERM 335 209295 - 209264 - f 81 -9 -3.88601 | opp_overlap 209262 209264 TAAAATTTATAATAA CTGATTAAATAG CCATTATT CTATTTAATCAG TATTTTTATTATGCT TERM 336 209264 - 209295 + F 84 -9 -4.2328 | opp_overlap 209264, overlap 209262 TAAAATTTATAATAA CTGATTAAATAG CCATTATT CTATTTAATCAG TATTTTTATTATGCT CLK_3356 209477 - 211126 + | hypothetical protein CLK_3357 211147 - 211407 + | hypothetical protein CLK_3358 211421 - 212107 + | Ser/Thr protein phosphatase family protein CLK_3359 212191 - 212472 + | ArsR family transcriptional regulator CLK_3360 212512 - 214965 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 337 215011 - 214967 - T 100 -13.4 -4.06678 | opp_overlap 214967 214978, overlap 214972 214978 ATTTATTCATATAAA TAAAATAAAAATCCTATG GAACATGCT CATAGGATTTTTATTTTA TTTAGAAATCTAGAT TERM 338 214967 - 215011 + T 100 -14.1 -3.5944 | opp_overlap 214967 214972 214978, overlap 214978 ATTTATTCATATAAA TAAAATAAAAATCCTATGG AACATGC TCATAGGATTTTTATTTTA TTTAGAAATCTAGAT TERM 339 215006 - 214972 - T 100 -8.9 -5.05113 | opp_overlap 214967 214978, overlap 214967 214978 TTCATATAAATAAAA TAAAAATCCTATG GAACATGCT CATAGGATTTTTA TTTTATTTAGAAATC TERM 340 214978 - 215000 + T 82 -4.2 -5.67711 | opp_overlap 214972 214967 214978, overlap 214967 TAAATAAAATAAAAA TCCTATGG AACATGC TCATAGGA TTTTTATTTTATTTA TERM 341 215000 - 214978 - T 77 -3.5 -5.67711 | opp_overlap 214978 214967, overlap 214972 214967 TAAATAAAATAAAAA TCCTATG GAACATGCT CATAGGA TTTTTATTTTATTTA CLK_3361 215847 - 214993 - | hypothetical protein TERM 342 216169 - 216152 - g 81 -7.1 -4.67048 | GGAGGGTAAAAGAAA TTTCTAG TATC CTAGAAA AAGCAAATAAATTCA CLK_3362 216004 - 216792 + | RelA/SpoT domain-containing protein CLK_3363 216943 - 217056 + | hypothetical protein leuS 219537 - 217096 - | leucyl-tRNA synthetase TERM 343 217428 - 217448 + g 76 -9.9 -2.64616 | opp_overlap 217442, overlap 217432 CAATTATACTTTCTT TTAAGAATG AAG CATTCTTAA TAGTATCACTACCAA TERM 344 217790 - 217806 + g 73 -5.9 -4.59376 | TTTATATAATCATCA GGAGATA TAG TATTTCC TTTTGATTTACTCAT TERM 345 218811 - 218789 - G 71 -5.7 -4.46233 | GTAACTCCAAATAAA GTATCTACT CTTGT AGTAAATAC ATTAAAGCTCAAGTC TERM 346 219064 - 219081 + g 70 -4.1 -4.96501 | opp_overlap 219060 AGTATTACAACTTGG GCACC AATTAACA GGTGC TTTCTTTTTATAAGC TERM 347 219677 - 219648 - R 100 -7.3 -6.14618 | gap 1, opp_overlap 219648 TATAAAATAAAAAAA CCTTCATCTCC-TA ACT TATAGAGACGAAGG GTTATCCGCGGTACC CLK_3365 220342 - 219938 - | hypothetical protein TERM 348 220505 - 220487 - R 100 -8.2 -5.86976 | opp_overlap 220487 220489 TTATAAAATAAAAAA GAGTCCTT AAG AAGAACTC TCTTGGCTGCCCATG CLK_3367 221161 - 220637 - | hypothetical protein CLK_3368 221785 - 221186 - | DnaJ family molecular chaperone CLK_3369 222647 - 221772 - | hypothetical protein TERM 349 221925 - 221935 + g 70 -4 -4.94487 | GGCGCAGTTTACCAG TAGA AAA TCTA TTTTATCTTTTATAC TERM 350 222246 - 222230 - G 75 -9.5 -2.94976 | opp_overlap 222228 222230, overlap 222229 222232 AATCTTTCAAAGAAT TATCCAC AGT GTGGATA TGTTTTTCATATAAA TERM 351 222230 - 222246 + g 86 -9.5 -4.02302 | opp_overlap 222230 222229 222232, overlap 222228 AATCTTTCAAAGAAT TATCCAC AGT GTGGATA TGTTTTTCATATAAA TERM 352 222399 - 222416 + g 85 -3.5 -5.72622 | ATATTTTAGTGCTTC GTTATTG GCTA TAATAAC TTTTTTCTTTATAGG CLK_3370 223190 - 222651 - | putative adenylyl cyclase CyaB TERM 353 223338 - 223357 + H 74 -5.2 -5.17576 | opp_overlap 223338 TTGGTTTTGGTAAAA TATTTTAT ATTT ATAAAATA TTTTTTAACTTGATA CLK_3371 223497 - 224534 + | hypothetical protein TERM 354 224740 - 224780 + T 95 -11.6 -3.52079 | gap 1, opp_overlap 224740 TTAATATGAAAAAAA TAGTAGGTAGATTTATTCT TAAC AGAA-AAATCTATCTACTA TTATATCAAATATTA TERM 355 224780 - 224740 - T 100 -9.4 -5.63374 | gap 1, opp_overlap 224740 TTAATATGAAAAAAA TAGTAGGTAGATTTATTCT TAAC AGAA-AAATCTATCTACTA TTATATCAAATATTA fba 225741 - 224815 - | fructose-1,6-bisphosphate aldolase, class II TERM 356 225809 - 225797 - R 77 -9.1 -3.33261 | opp_overlap 225779 225797, overlap 225783 ATAGGGACACATTAA GTCCC TAT GGGAC TTTTATTTATTAACT TERM 357 225797 - 225809 + r 100 -9.1 -5.10665 | opp_overlap 225783 225797, overlap 225779 ATAGGGACACATTAA GTCCC TAT GGGAC TTTTATTTATTAACT CLK_3373 226251 - 225967 - | hypothetical protein CLK_3374 227036 - 226368 - | hypothetical protein TERM 358 228670 - 228652 - g 74 -2.4 -5.58454 | opp_overlap 228638, overlap 228655 TGTATATTAAAAAAA TATGCTCT TGC AGAACTTA ACAAAATAGATAAAA TERM 359 228722 - 228732 + G 72 -4 -5.01732 | opp_overlap 228722, overlap 228723 CAACTAGGCTAAAAA GTTT TTT AAAC TTTTTTAAAGAAGTT CLK_3375 227161 - 228819 + | putative threonyl-tRNA synthetase/uridine kinase TERM 360 229203 - 229160 - f 90 -12.2 -2.98361 | opp_overlap 229160, overlap 229177 229179 AAATCCATAATTATA TTTTTATATGCGTAAAATAT ATAT ACATTTTACGTATATAAAAA TTTTTAAGTTGTTTA TERM 361 229160 - 229203 + F 100 -12.2 -4.8384 | opp_overlap 229160 229177 229179 AAATCCATAATTATA TTTTTATATGCGTAAAATAT ATAT ACATTTTACGTATATAAAAA TTTTTAAGTTGTTTA CLK_3376 229484 - 229645 + | hypothetical protein TERM 362 229687 - 229722 + T 88 -4.8 -5.81622 | opp_overlap 229697, overlap 229697 229717 229718 TTAAGTTATTAATAA TAAAAAAAAATCGTGG GAAA CCACGATTTTTTAAAA TTTTTTTAATTTTAT TERM 363 229697 - 229712 + T 100 -9 -5.16472 | opp_overlap 229697, overlap 229687 AATAATAAAAAAAAA TCGTGG GAAA CCACGA TTTTTTAAAATTTTT TERM 364 229712 - 229697 - T 100 -9 -6.44931 | opp_overlap 229697 229687 AATAATAAAAAAAAA TCGTGG GAAA CCACGA TTTTTTAAAATTTTT pssA 230238 - 229717 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 365 230010 - 230000 - G 71 -6.8 -3.97108 | AAGGTTAAAATAGAA GGTG CTA CACC AAAAGAAACTAAATC CLK_3378 230425 - 230841 + | CBS domain-containing protein TERM 366 230881 - 230851 - f 70 -7 -3.68036 | opp_overlap 230851, overlap 230849 AATTAGGTTAAAATA TCCACAGGATTT ATTGTTA AAATCTTGTGGA TTTGCTATTATATAA TERM 367 230851 - 230881 + F 86 -9.2 -3.99275 | opp_overlap 230851 230849 AATTAGGTTAAAATA TCCACAGGATTT ATTGTTA AAATCTTGTGGA TTTGCTATTATATAA TERM 368 231343 - 231327 - g 82 -6.7 -4.91852 | opp_overlap 231326 TTTAGGAAAAATAAA TGATAAA TAT TTTATCA ATGTTGCTAGCACAG CLK_3379 230947 - 231831 + | hypothetical protein CLK_3380 231905 - 232549 + | hypothetical protein TERM 369 232616 - 232648 + T 93 -6.5 -5.88197 | opp_overlap 232621 ATTTAATAATATATA AAAAATAAACAGC ACTAGAG GCTGTTTATTTTC TTTTTTTGTGTTTAG TERM 370 232643 - 232621 - T 88 -6.4 -5.48787 | opp_overlap 232616 ATAATATATAAAAAA TAAACAGC ACTAGAG GCTGTTTA TTTTCTTTTTTTGTG CLK_3381 234578 - 232641 - | radical SAM domain-containing protein TERM 371 232736 - 232755 + g 83 -2.2 -5.94713 | overlap 232739 TTTTATTATAATGGT TATTGTTA TTCT TAACATTA TTTTTTTTATGAGAT TERM 372 232739 - 232752 + g 70 -3.9 -5.03409 | overlap 232736 TATTATAATGGTTAT TGTTA TTCT TAACA TTATTTTTTTTATGA TERM 373 234987 - 235001 + H 78 -4.2 -5.54907 | TTAGTTATGGATAGG GAGCTT AGT GGGCTC TTTTTGTTTTGTAAA CLK_3382 235173 - 236438 + | PRC-barrel domain/MgtE domain/CBS domain-containing protein TERM 374 236542 - 236505 - f 100 -13.1 -5.61913 | opp_overlap 236505 236507, overlap 236507 AACAAATATAAAAAA TACATGTAATAAACTTA TGGA TAAGTTTATTACATGTG TTTTTTTATTTTCGA TERM 375 236505 - 236542 + F 100 -15.3 -6.09196 | opp_overlap 236505 236507, overlap 236507 AACAAATATAAAAAA TACATGTAATAAACTTA TGGA TAAGTTTATTACATGTG TTTTTTTATTTTCGA TERM 376 236507 - 236540 + F 100 -15.7 -4.67109 | opp_overlap 236505 236507, overlap 236505 CAAATATAAAAAATA CATGTAATAAACTTA TGGA TAAGTTTATTACATG TGTTTTTTTATTTTC TERM 377 236540 - 236507 - f 100 -15.7 -4.40478 | opp_overlap 236507 236505, overlap 236505 CAAATATAAAAAATA CATGTAATAAACTTA TGGA TAAGTTTATTACATG TGTTTTTTTATTTTC sleB 236663 - 237358 + | spore-cortex-lytic enzyme TERM 378 237682 - 237649 - f 72 -8.3 -3.2661 | opp_overlap 237640 237651, overlap 237647 237651 GAACCACGGAGAATA TACTTCGTCTCTATA TTTT TATAGAGATGAAGTT TTTTTATATTAAGTT TERM 379 237651 - 237680 + F 100 -13.1 -5.80817 | opp_overlap 237649 237647 237651, overlap 237640 ACCACGGAGAATATA CTTCGTCTCTATA TTTT TATAGAGATGAAG TTTTTTTATATTAAG TERM 380 237680 - 237651 - f 90 -10.9 -3.19212 | opp_overlap 237640 237651, overlap 237649 237647 ACCACGGAGAATATA CTTCGTCTCTATA TTTT TATAGAGATGAAG TTTTTTTATATTAAG cysK 237722 - 238636 + | cysteine synthase A cysE 238651 - 239247 + | serine O-acetyltransferase TERM 381 239455 - 239489 + G 70 -5.1 -4.62772 | opp_overlap 239455 239457 239465, overlap 239457 TTTCAATATATGAAA GAGGGGAAAACAATA ATTTC TATTGCTTTTCCCTA TTTATTTAATTTAGG TERM 382 239487 - 239457 - g 74 -8.4 -3.55205 | opp_overlap 239455 239457, overlap 239455 239465 TCAATATATGAAAGA GGGGAAAACAATAA TTT CTATTGCTTTTCCC TATTTATTTAATTTA TERM 383 239457 - 239487 + G 76 -7.7 -3.91294 | opp_overlap 239457 239455 239465, overlap 239455 TCAATATATGAAAGA GGGGAAAACAATA ATTTC TATTGCTTTTCCC TATTTATTTAATTTA TERM 384 240101 - 240089 - g 74 -7.7 -3.76387 | AAAAATATAAACTAA CATCC TGC GGATG GAGAGGAAAGAGTAT CLK_3386 239269 - 240234 + | iron-sulfur cluster-binding protein TERM 385 240767 - 240739 - g 77 -7.5 -4.31329 | overlap 240760 GTAAAAACTTTAAAA TCGGGGAATAATA TTT TAATATTCCCTGA AGGAACGAGAAGTAG CLK_3387 240382 - 241083 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein TERM 386 241153 - 241122 - f 77 -9 -3.41002 | opp_overlap 241132, overlap 241125 ATAACAGCTAAGGAA TACTTTAATAGATG CAGT CATCTATTAAACTA AAATTATGGGAGTGA TERM 387 241150 - 241125 - f 81 -10.7 -2.55337 | opp_overlap 241132, overlap 241122 ACAGCTAAGGAATAC TTTAATAGATG CAGT CATCTATTAAA CTAAAATTATGGGAG TERM 388 241591 - 241569 - g 72 -7.8 -3.55622 | GCCAATGCTTTTAAA GTACCTACTA TAG CAGTAGATAC CCATGTTTTTAGAGT TERM 389 241789 - 241779 - g 81 -2.6 -5.67063 | opp_overlap 241779 TGTACTATAAAAAAA TATT GCA AATA TTATAATGAAGAGAT nth 241176 - 241817 + | endonuclease III TERM 390 241879 - 241896 + F 70 -2.7 -5.51165 | opp_overlap 241880, overlap 241880 GTTTTGCTATTAAAG ATATCCA CATG TGGATAA TTTTTTTGGGATTTT TERM 391 241932 - 241963 + F 95 -11.6 -3.62522 | opp_overlap 241925, overlap 241933 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGAATTC TERM 392 241968 - 242007 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 241925 241976, overlap 241972 241973 241975 CCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 393 241973 - 242003 + F 79 -9.8 -2.75769 | opp_overlap 241976, overlap 241972 241968 241975 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 394 242000 - 241976 - f 90 -10.1 -3.71552 | opp_overlap 241975 241973 241972 241968 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLK_3389 242201 - 243373 + | malic enzyme CLK_3390 244154 - 243684 - | hypothetical protein TERM 395 243970 - 243980 + g 91 -5.4 -5.82172 | opp_overlap 243970 CAAGTATCTTTAAAG GCAT CCC ATGC TTTTTTTGTATTAAT CLK_3391 244775 - 244302 - | hypothetical protein CLK_3392 244919 - 247957 + | hypothetical protein TERM 396 247975 - 248011 + T 74 -8.2 -3.43328 | opp_overlap 247976, overlap 247976 247982 ATTAGTGGTAAAAAA AGAAAAGGTAGAGATT AAGAG AGTCTCTACTTTTTCG TTGCTATATTTAGTA TERM 397 247976 - 248010 + T 86 -11.7 -2.65274 | opp_overlap 247976, overlap 247975 247982 TTAGTGGTAAAAAAA GAAAAGGTAGAGATT AAGAG AGTCTCTACTTTTTC GTTGCTATATTTAGT TERM 398 248010 - 247976 - T 90 -7.3 -5.42259 | opp_overlap 247976 247975 247982 TTAGTGGTAAAAAAA GAAAAGGTAGAGATT AAGAG AGTCTCTACTTTTTC GTTGCTATATTTAGT TERM 399 247982 - 248004 + T 83 -7.1 -4.91873 | opp_overlap 247976, overlap 247976 247975 GTAAAAAAAGAAAAG GTAGAGATT AAGAG AGTCTCTAC TTTTTCGTTGCTATA CLK_3393 249380 - 248151 - | cinA family protein CLK_3394 250389 - 249406 - | hypothetical protein CLK_3395 251533 - 250499 - | glutamyl aminopeptidase family protein TERM 400 250635 - 250621 - G 71 -8.6 -2.82327 | opp_overlap 250602, overlap 250602 250620 CTTTTATATCGAAAC CTGCTT TTA AAGCAG CACTTGCATCAGATC TERM 401 251267 - 251255 - G 76 -7.7 -3.99806 | opp_overlap 251265 AGAATTCATCATAAA TCCAC CTA GTGGA ACGATGGATAATGTT CLK_3396 251661 - 252821 + | vanW-like family protein TERM 402 252908 - 252865 - f 93 -11.3 -3.31501 | opp_overlap 252865, overlap 252868 ATTAAGTTTTTAGAA TAAGCCCTCTTAAAATAGA TTTAAT TTTATTTTCAGAGGGCTTA TTTTTATATAAATTA TERM 403 252865 - 252908 + F 100 -13.5 -5.00642 | opp_overlap 252865 252868 ATTAAGTTTTTAGAA TAAGCCCTCTTAAAATAGA TTTAAT TTTATTTTCAGAGGGCTTA TTTTTATATAAATTA TERM 404 252905 - 252868 - f 76 -8.6 -3.79678 | opp_overlap 252865, overlap 252865 AAGTTTTTAGAATAA GCCCTCTTAAAATAGA TTTAAT TTTATTTTCAGAGGGC TTATTTTTATATAAA TERM 405 254164 - 254142 - g 72 -4.2 -5.0133 | TAGTTCCTTAAAAAA CAAAACATAT AAT ATAAGTTCTG AAATATATGAAACTA CLK_3397 253027 - 254379 + | vanW-like family protein TERM 406 254501 - 254528 + F 79 -8.6 -4.15044 | opp_overlap 254500 TTTAGAAATAAATTG CATACTATAACT AAGG AGTGATAGTATG TTTATTCCCAAAACA TERM 407 255284 - 255272 - g 75 -4.9 -5.17353 | opp_overlap 255272 AGATTTATTAAAAAA CATAA ATA TTATG TTTAAAGGTGTTCCC splB 254526 - 255533 + | spore photoproduct lyase TERM 408 255561 - 255529 - f 83 -10.9 -2.71204 | opp_overlap 255529 255535, overlap 255521 255535 255538 ACATTAACTACATTA TATAGAGAATTAACA TTT TGTTAATTCTTTATA TTCTTTACTAAAGCT TERM 409 255529 - 255561 + F 100 -13.1 -4.0031 | opp_overlap 255521 255529 255535 255538, overlap 255535 ACATTAACTACATTA TATAGAGAATTAACA TTT TGTTAATTCTTTATA TTCTTTACTAAAGCT TERM 410 255555 - 255535 - f 82 -9.9 -3.04537 | opp_overlap 255529 255535, overlap 255529 255538 ACTACATTATATAGA GAATTAACA TTT TGTTAATTC TTTATATTCTTTACT TERM 411 255535 - 255555 + F 100 -9.9 -4.41237 | opp_overlap 255535 255529 255538, overlap 255529 ACTACATTATATAGA GAATTAACA TTT TGTTAATTC TTTATATTCTTTACT TERM 412 255740 - 255792 + F 93 -10 -4.14859 | gap 1, opp_overlap 255744 255769, overlap 255741 255744 TACGTCCTTGGATAG C-GAATTCTAAGCTTCAGAGGGAGT AGAA ACTCCCTCTGAAGGCAAGAACTCTG TTTATACTTATTAGT TERM 413 255741 - 255790 + F 100 -13.7 -3.65963 | opp_overlap 255744 255769, overlap 255740 255744 ACGTCCTTGGATAGC GAATTCTAAGCTTCAGAGGGAGT AGAA ACTCCCTCTGAAGGCAAGAACTC TGTTTATACTTATTA TERM 414 255744 - 255787 + F 100 -14 -2.62326 | opp_overlap 255744 255769, overlap 255741 255740 TCCTTGGATAGCGAA TTCTAAGCTTCAGAGGGAGT AGAA ACTCCCTCTGAAGGCAAGAA CTCTGTTTATACTTA TERM 415 255787 - 255744 - f 100 -16.2 -3.12351 | opp_overlap 255744 255741 255740, overlap 255769 TCCTTGGATAGCGAA TTCTAAGCTTCAGAGGGAGT AGAA ACTCCCTCTGAAGGCAAGAA CTCTGTTTATACTTA CLK_3399 255842 - 256309 + | hypothetical protein TERM 416 256500 - 256486 - g 70 -4.3 -4.91977 | opp_overlap 256495 TACTAAAATAGAAAA GGAAA ATGTG TTTCC GCAAACTTCTCAAGT CLK_3400 256322 - 257161 + | DegV family protein CLK_3401 257455 - 258558 + | Bmp family lipoprotein TERM 417 258581 - 258634 + F 90 -10.8 -3.44267 | gap 1, opp_overlap 258572 258586 258587 258596 258631, overlap 258572 258587 258596 258631 AGATAATATTAGGAA TATAATG-TTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGCTATATA TATTATAATTTTATT TERM 418 258628 - 258586 - f 95 -10.9 -3.73144 | opp_overlap 258581 258587 258596, overlap 258587 258596 ATATTAGGAATATAA TGTTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGC TATATATATTATAAT TERM 419 258587 - 258628 + F 100 -14.2 -3.13593 | gap 1, opp_overlap 258586 258587 258596, overlap 258581 258596 TATTAGGAATATAAT G-TTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGC TATATATATTATAAT TERM 420 258627 - 258587 - f 100 -14.4 -2.83163 | opp_overlap 258587 258581 258596, overlap 258586 258596 TATTAGGAATATAAT GTTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAG CTATATATATTATAA TERM 421 258596 - 258618 + F 100 -10.7 -4.4195 | opp_overlap 258587 258586 258596, overlap 258587 258581 TATAATGTTATAAAA GCTAGATGT ACTTA ACATCTAGC TTTTATAAGCTATAT TERM 422 258618 - 258596 - f 100 -10.7 -4.43859 | opp_overlap 258596 258587 258581, overlap 258587 258586 TATAATGTTATAAAA GCTAGATGT ACTTA ACATCTAGC TTTTATAAGCTATAT CLK_3402 258741 - 260273 + | putative sugar ABC transporter, ATP-binding protein CLK_3403 260275 - 261378 + | putative sugar ABC transporter, permease protein CLK_3404 261371 - 262297 + | putative sugar ABC transporter, permease protein TERM 423 262303 - 262330 + F 100 -12.2 -5.93252 | opp_overlap 262303 TAGTAGATAACTTAA TGGAGTTAGAAA GAGA TTTCTAGCTCCA TTTTTTATTTTTGAA TERM 424 262330 - 262303 - f 85 -10 -3.27164 | opp_overlap 262303 TAGTAGATAACTTAA TGGAGTTAGAAA GAGA TTTCTAGCTCCA TTTTTTATTTTTGAA CLK_3405 262409 - 263134 + | polysaccharide deacetylase family protein TERM 425 263153 - 263181 + F 70 -4 -5.1167 | gap 1, opp_overlap 263153 ATTATAAGTAAAAAA GAGGCCATT-TTA TATT TAATAATGGGCTC TTTTTATATTGGATT TERM 426 263181 - 263153 - f 72 -4 -5.33848 | gap 1, opp_overlap 263153 ATTATAAGTAAAAAA GAGGCCATT-TTA TATT TAATAATGGGCTC TTTTTATATTGGATT rpoN 263464 - 264837 + | RNA polymerase sigma-54 factor TERM 427 264840 - 264862 + F 83 -3.5 -5.99154 | opp_overlap 264840 AAAGCGTTTTTAAAA GCATGAT TTATATATT ATCATGC TTTTTTTATTTAATA TERM 428 265018 - 264996 - f 75 -3.6 -5.58209 | opp_overlap 264996 264997, overlap 265008 TTAAATTTAAAAAAA TTTTTTGAAA AAT TTTAAAAAAA CCCTTTAAAAGTAGG cggR 265125 - 266156 + | central glycolytic genes regulator gap 266234 - 267241 + | glyceraldehyde-3-phosphate dehydrogenase, type I pgk 267538 - 268734 + | phosphoglycerate kinase tpiA 268796 - 269542 + | triosephosphate isomerase gpmI 269629 - 271158 + | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TERM 429 271923 - 271907 - g 80 -2.2 -5.66684 | overlap 271908 GAAGCTATAAAAAAA GCTGGA TATAC TCCAGG AAAAGACATATTTAT eno 271214 - 272509 + | enolase TERM 430 272526 - 272550 + F 100 -11.5 -3.88498 | opp_overlap 272526 272525 272522 AATTTTTAAAACAAG GGACTGCTCAT AGT ATGGGTAGTCC TTTAATCTATAAAAA secG 272733 - 272966 + | preprotein translocase, SecG subunit TERM 431 272994 - 273023 + F 73 -3.1 -5.61596 | gap 1 AAGTATGAATTTAAT TAGCTGTTTAAT GTGAATA ATT-AACAGCTA TTTTTTTATAAAAAT TERM 432 273025 - 273048 + F 77 -7 -4.50193 | ATAATTAACAGCTAT TTTTTTATAA AAAT TTATAAAAAA TTTTAATTAATTAGT rnr 273176 - 275353 + | ribonuclease R TERM 433 275367 - 275407 + F 90 -13 -2.74784 | gap 1, opp_overlap 275372, overlap 275363 275370 275376 AAGTTAAAAATTGTT TAAGAGAAACTCAGT-TTA AAGT TAATGCTGAGTTTCTCTTA TGAGTTTTAAAAGAT TERM 434 275370 - 275404 + F 91 -10.3 -3.52113 | gap 1, opp_overlap 275372, overlap 275367 275363 275376 TTAAAAATTGTTTAA GAGAAACTCAGT-TTA AAGT TAATGCTGAGTTTCTC TTATGAGTTTTAAAA TERM 435 276174 - 276164 - g 82 -4 -5.58051 | AAATAAAAAAGAAAA CTAT AAA ATAG CCGCTAAATATGCAC surE 275754 - 276512 + | acid phosphatase SurE smpB 276769 - 277239 + | SsrA-binding protein TERM 436 277297 - 277330 + T 100 -12.8 -5.88197 | opp_overlap 277297 TGCTACCATAAAAAA TACATTTCATAAAC TAATTT GTTTATGAAATGTA TTTTTTTATCTTTGC TERM 437 277330 - 277297 - T 100 -12.8 -5.31275 | opp_overlap 277297 TGCTACCATAAAAAA TACATTTCATAAAC TAATTT GTTTATGAAATGTA TTTTTTTATCTTTGC CLK_3417 278542 - 277379 - | sodium:dicarboxylate symporter family protein TERM 438 277748 - 277762 + g 70 -3.6 -5.03747 | opp_overlap 277743, overlap 277745 ATCCACAATATCTTC TCTAAG AAC TTTAGA TTTTTTAGCGGATTT TERM 439 278615 - 278600 - H 73 -3.4 -5.54079 | opp_overlap 278600 278595, overlap 278593 GGAAAAACTAAAAAA TTTAAT CAGT ATTAAA TTTTATTTTAGTGTT TERM 440 278697 - 278671 - H 100 -7.3 -6.14618 | opp_overlap 278671 TAGAAAATAAAAAAA CTCCTACCTCC TATAC AGAGGCAGAAG TTATATTCCGCGGTT TERM 441 279935 - 279914 - H 72 -8.9 -2.55 | TAACACGCCAAGGTA CTTAAAACT TATA AGTTTTAAG CATGAGATATAGTCA TERM 442 279997 - 280036 + H 82 -8.8 -4.13648 | opp_overlap 280002, overlap 280002 CCTCGCCTCCACCAT GAAAATCTCGACAATACA GAAA TGTGTTATCGAGATTTTA TTTATATATAGAATT TERM 443 280031 - 280002 - H 84 -8.7 -4.30576 | opp_overlap 279997 280002 CCTCCACCATGAAAA TCTCGACAATACA GAAA TGTGTTATCGAGA TTTTATTTATATATA TERM 444 280002 - 280031 + H 100 -8.7 -5.07523 | opp_overlap 280002, overlap 279997 CCTCCACCATGAAAA TCTCGACAATACA GAAA TGTGTTATCGAGA TTTTATTTATATATA CLK_3418 280213 - 280716 + | MepB family protein TERM 445 280995 - 280976 - f 93 -6.4 -5.84381 | opp_overlap 280975 280976 280993 CCACTAATAAAAAAA CCATCACA GATT TGTGGTGG GTTTTACCTATTTTA TERM 446 280976 - 280995 + F 72 -8.6 -3.20264 | opp_overlap 280976, overlap 280975 280993 CCACTAATAAAAAAA CCATCACA GATT TGTGGTGG GTTTTACCTATTTTA TERM 447 281275 - 281297 + F 100 -12.8 -6.07374 | opp_overlap 281275 GCCTCCACCATGAAA TCCACGACAG TGA TTGTCGTGGA TTTTTTATTTTTTAT TERM 448 281297 - 281275 - f 95 -12.1 -3.78775 | opp_overlap 281275 GCCTCCACCATGAAA TCCACGACA GTGAT TGTCGTGGA TTTTTTATTTTTTAT TERM 449 282592 - 282579 - g 77 -8.1 -3.85698 | opp_overlap 282578 TCGTTTGGGTAGAAA GGCTC AGAC GAGCC ATGTTAAAATATGTG CLK_3419 281444 - 282775 + | FAD-binding protein TERM 450 282939 - 282918 - T 100 -14.5 -4.48713 | opp_overlap 282918 TCCACCAATAAGAAA CCCACCACA GATT TGTGGTGGG TTTTACCTATTCAAA TERM 451 282918 - 282939 + T 100 -14.5 -4.28254 | opp_overlap 282918 TCCACCAATAAGAAA CCCACCACA GATT TGTGGTGGG TTTTACCTATTCAAA CLK_3420 283170 - 282946 - | hypothetical protein CLK_3421 283448 - 283996 + | hypothetical protein TERM 452 284024 - 284057 + T 100 -14.3 -4.65895 | opp_overlap 284024 GATCAGCTAATCAAA GTTAAGTAAAATATT AAAA AATATTTTACTTAAC TTTTTGCATGGCAAA TERM 453 284057 - 284024 - T 100 -14.3 -3.94002 | opp_overlap 284024 GATCAGCTAATCAAA GTTAAGTAAAATATT AAAA AATATTTTACTTAAC TTTTTGCATGGCAAA CLK_3422 284716 - 284432 - | GntR family transcriptional regulator TERM 454 285310 - 285300 - g 74 -6.8 -4.27617 | TACATTTGATCAAAA TGCC ACA GGCA GAGATAATTCCAGTG CLK_3423 284992 - 286416 + | putative amino acid decarboxylase TERM 455 287057 - 287043 - g 74 -7.1 -4.02108 | TGCAGGAGAAGTAAA GCTCC AGATA GGAGC TAACGAAGGGCAATT CLK_3424 286603 - 287454 + | flagellin protein TERM 456 287620 - 287641 + F 100 -9.5 -5.53288 | opp_overlap 287620 ACCTCCACCCAAAAA TCTACGACA GAAA TGTCGTGGA TTTTTTTAGGTTACA TERM 457 287641 - 287620 - f 79 -7.3 -4.66163 | opp_overlap 287620 ACCTCCACCCAAAAA TCTACGACA GAAA TGTCGTGGA TTTTTTTAGGTTACA TERM 458 288469 - 288429 - g 72 -7.8 -3.66178 | gap 1, opp_overlap 288439, overlap 288435 288436 GGCCCTAAGTGCAAA GGTAAAGTCACCACGGAAA CACT TTTCCGTAGTAA-TGTACC TGACACTTTGGAAGG TERM 459 288463 - 288436 - g 77 -10 -2.90617 | opp_overlap 288439, overlap 288435 288429 AGTGCAAAGGTAAAG TCACCACGGAAA CACT TTTCCGTAGTAA TGTACCTGACACTTT TERM 460 288595 - 288571 - g 73 -3.8 -5.252 | gap 1, opp_overlap 288584, overlap 288575 TACCTGTAGAAAAAA TCGATTATATG ACTT CATATAAT-GA ATGGCTTAATATACA CLK_3425 287814 - 289433 + | vanadium-dependent haloperoxidase TERM 461 289535 - 289494 - f 75 -8.9 -3.15726 | opp_overlap 289485 289495 289534, overlap 289492 289487 289534 AAAAATTATCTAATA GGTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATACT TTTTTGCAGCTTGAA TERM 462 289495 - 289534 + F 100 -12.4 -5.055 | opp_overlap 289494 289492 289487, overlap 289485 AAAATTATCTAATAG GTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATAC TTTTTTGCAGCTTGA TERM 463 289747 - 289760 + F 75 -3.9 -5.52079 | GTTCATTAGTCATGC TATCA CTTT TGATA TTTTTATTTTAGTAT CLK_3426 289923 - 290579 + | hypothetical protein TERM 464 290681 - 290706 + F 100 -9.1 -5.16206 | AAATACATGATTTAG TACCCTGAAAT AGTA ATCTCAGGGTA TTTTTGTATTCATTT CLK_3427 291244 - 292353 + | hypothetical protein TERM 465 292463 - 292490 + F 86 -7.9 -4.81249 | opp_overlap 292454 292463 292466 TAAGTATATTAAAAA TAGCAGTTAGT TTATGT ACTAACTGTTA TTTTTGCATTTAAAG TERM 466 292490 - 292463 - f 73 -5.7 -4.84274 | opp_overlap 292463, overlap 292454 292466 TAAGTATATTAAAAA TAGCAGTTAGT TTATGT ACTAACTGTTA TTTTTGCATTTAAAG TERM 467 292836 - 292814 - f 100 -13.6 -3.13722 | opp_overlap 292814, overlap 292804 AAATACATGATTTAA TATCCTGAGA TAG TCTCAGGATA TTTTTTTATGCTCGT TERM 468 292814 - 292836 + F 100 -13.6 -5.67967 | opp_overlap 292814 292804 AAATACATGATTTAA TATCCTGAGA TAG TCTCAGGATA TTTTTTTATGCTCGT TERM 469 293131 - 293141 + G 71 -6.8 -3.9243 | opp_overlap 293118, overlap 293118 ATGGCAACCTTTATG CCTG TAT CAGG TTCTTTCGAAACTTA lysP 292900 - 294363 + | lysine-specific permease TERM 470 294407 - 294371 - f 100 -12.6 -4.66537 | opp_overlap 294371 294377 TTGTTTAAGATAAAA TATAAAGACTGCTGAT ATTTA ATCATCAGTCTTTATA TTTATTAGGTGATAG TERM 471 294371 - 294407 + F 100 -12.6 -4.21974 | opp_overlap 294371, overlap 294377 TTGTTTAAGATAAAA TATAAAGACTGCTGAT ATTTA ATCATCAGTCTTTATA TTTATTAGGTGATAG TERM 472 294377 - 294401 + F 77 -7.2 -4.46072 | opp_overlap 294371, overlap 294371 AAGATAAAATATAAA GACTGCTGAT ATTTA ATCATCAGTC TTTATATTTATTAGG TERM 473 294631 - 294655 + F 75 -8.7 -3.24386 | opp_overlap 294636, overlap 294632 294636 TAGTTTGAAATGCTT TTAAAGTTCCA TCA TGGAGCTTTAG TTAATGATGCATTTT TERM 474 294632 - 294654 + F 78 -10 -2.53908 | opp_overlap 294636, overlap 294631 294636 AGTTTGAAATGCTTT TAAAGTTCCA TCA TGGAGCTTTA GTTAATGATGCATTT TERM 475 294835 - 294870 + F 100 -19.3 -4.76874 | opp_overlap 294835 TGTTTATATAAACAA GATCCCCATAGATGA TATTGT TCATCTATGGGGATC TTTTAATTTTATATT TERM 476 294870 - 294835 - f 100 -19.3 -4.14627 | opp_overlap 294835 TGTTTATATAAACAA GATCCCCATAGATGA TATTGT TCATCTATGGGGATC TTTTAATTTTATATT TERM 477 295307 - 295291 - g 71 -3 -5.23765 | overlap 295300 CAAAGAATATAAAAA CCTTCA AGATA TAAAGG TTATACCTGCTGATG CLK_3429 294905 - 295639 + | metallo-beta-lactamase family protein CLK_3430 295779 - 296417 + | streptogramin A acetyltransferase CLK_3431 296456 - 296968 + | acetyltransferase CLK_3432 296996 - 297898 + | acetyltransferase CLK_3433 298087 - 299016 + | DNA polymerase III epsilon subunit family exonuclease CLK_3434 299279 - 299965 + | regulatory protein VanR CLK_3435 300015 - 301073 + | VanS TERM 478 301101 - 301154 + F 100 -10.8 -5.02476 | opp_overlap 301104 301108, overlap 301104 ACCTATATAAATTAT GAATAAACTTTTGTCTAATAATTG ATAAAG TAATGATTAGACAAAAGTTTATTA TTTTTTGGAGGGTCT TERM 479 301151 - 301104 - f 95 -11.8 -3.36538 | opp_overlap 301101 301104, overlap 301108 TATATAAATTATGAA TAAACTTTTGTCTAATAATT GATAAAGT AATGATTAGACAAAAGTTTA TTATTTTTTGGAGGG TERM 480 301104 - 301151 + F 100 -12.5 -4.61482 | opp_overlap 301104 301108, overlap 301101 TATATAAATTATGAA TAAACTTTTGTCTAATAATTG ATAAAG TAATGATTAGACAAAAGTTTA TTATTTTTTGGAGGG TERM 481 301147 - 301108 - f 80 -8.2 -4.30833 | opp_overlap 301104 301101, overlap 301104 TAAATTATGAATAAA CTTTTGTCTAATAATT GATAAAGT AATGATTAGACAAAAG TTTATTATTTTTTGG CLK_3436 301173 - 302036 + | ABC transporter ATP-binding protein CLK_3437 302039 - 303253 + | hypothetical protein CLK_3438 303261 - 304370 + | hypothetical protein TERM 482 304451 - 304494 + T 77 -7.8 -4.07568 | gap 2, opp_overlap 304463, overlap 304463 TAGTACATTTTGAAG TGCACC-CCA-AAGTTTAGA CAAAAA TCTAAATTTTTGGAGGTGCA TTTTCAGGAAAAAAG CLK_3439 305349 - 304675 - | isochorismate family protein CLK_3440 305645 - 307975 + | xanthine dehydrogenase family protein, molybdopterin-binding subunit CLK_3441 307975 - 308814 + | xanthine dehydrogenase family protein, FAD-binding subunit CLK_3442 308811 - 309284 + | xanthine dehydrogenase family protein, iron-sulfur-binding subunit TERM 483 309352 - 309383 + F 83 -5.9 -5.27769 | opp_overlap 309346 309345, overlap 309354 TATATTAAGTGGGTT TCCCCATGGATGA TATTGT TCATCTGTGGGAA TTTTTCGTTTTTTGT TERM 484 309713 - 309697 - g 85 -8.1 -4.63527 | CTATGAGGGTAAAAA TCCTAAT AAT ATTAGGA GCAAGTATACTAATT CLK_3443 309684 - 310154 + | hypothetical protein CLK_3444 310165 - 310848 + | putative cytochrome c-type biogenesis protein CcdA CLK_3445 310870 - 311436 + | putative thiol-disulfide oxidoreductase ResA CLK_3446 311461 - 312138 + | DNA-binding response regulator CLK_3447 312275 - 313528 + | sensor histidine kinase TERM 485 313554 - 313598 + T 100 -10.2 -4.65838 | opp_overlap 313554 313561 TAATTTTTATATCAA TCTAGAAGACACTCTTACTT TTGGT AGGCATGAGTGTCTTTTAGA TTTTTCAAATATATA CLK_3448 314955 - 313639 - | amidohydrolase TERM 486 314978 - 315004 + r 79 -8.3 -4.16016 | opp_overlap 314984, overlap 314981 314984 CCTCCATATTTATTT TAATAATGAAT AATTG ATTCATTATTA TTTATTAAAAAATGG TERM 487 315017 - 315036 + r 70 -7.2 -3.827 | opp_overlap 315017 TTATTTATTAAAAAA TGGTAATG CGAA CATTGCCA TTTAAATTGGTTATT TERM 488 315036 - 315017 - R 74 -5 -5.1675 | opp_overlap 315017 TTATTTATTAAAAAA TGGTAATG CGAA CATTGCCA TTTAAATTGGTTATT CLK_3449 315658 - 315047 - | putative regulatory protein BetI TERM 489 315671 - 315699 + H 78 -7.7 -4.32034 | opp_overlap 315678, overlap 315672 315678 CATAGAAATCTCCTT ATAAAAATGAATA TAT TATTCATTTTTAA TTTTACTACTAATAA TERM 490 315672 - 315698 + H 90 -11.2 -3.18738 | opp_overlap 315678, overlap 315671 315678 ATAGAAATCTCCTTA TAAAAATGAATA TAT TATTCATTTTTA ATTTTACTACTAATA TERM 491 315692 - 315678 - H 73 -5.8 -4.83169 | opp_overlap 315672 315671 315678 ATCTCCTTATAAAAA TGAATA TAT TATTCA TTTTTAATTTTACTA TERM 492 315678 - 315692 + H 78 -5.8 -5.1166 | opp_overlap 315678, overlap 315672 315671 ATCTCCTTATAAAAA TGAATA TAT TATTCA TTTTTAATTTTACTA TERM 493 315841 - 315863 + H 100 -7.7 -5.72622 | opp_overlap 315834 315841 TAAAAAACTAATAAG GCGGAGGAG ATATG TTCCTCTGC TTTTTTATTTATAAA TERM 494 316012 - 316034 + H 75 -8.4 -3.59432 | overlap 316013 316029 TCTTAATTATTTATC ACTGTGCACT AAA AGTGCACGGG TTCGTGTTTTCTATA TERM 495 316013 - 316033 + H 86 -11.9 -2.74575 | overlap 316012 316029 CTTAATTATTTATCA CTGTGCACT AAA AGTGCACGG GTTCGTGTTTTCTAT TERM 496 317075 - 317062 - g 82 -5.3 -5.37593 | TTTTAAACGAAAAAA CATCA ATAA TGATG AAAAACAAGCAGTTT CLK_3450 316143 - 318104 + | putative beta-lactamase CLK_3451 318178 - 318873 + | regulatory protein VanR TERM 497 319041 - 319052 + G 72 -4.4 -5.1286 | opp_overlap 319041 TATTTATGTTACAAT TTGC TATG GCAA TTTTTGTGGTTTTTA CLK_3452 318851 - 319951 + | sensory transduction histidine kinase TERM 498 320305 - 320278 - T 91 -10.8 -3.80622 | gap 1 AGAGAAATTTAAGAA GGTCCA-TTTTGT ATA ACAAAAATGGACC CGTTGCAATTGTACA CLK_3453 321679 - 320357 - | putative oxidoreductase, FAD-binding glvA 321991 - 323316 + | maltose-6'-phosphate glucosidase TERM 499 323383 - 323346 - f 75 -8.7 -3.23009 | gap 1, opp_overlap 323346, overlap 323337 323350 TAAAAAGCTTATCAA GAAAGGTAATT-AGATAG AGA CAACCTTAATTACCTTTC TTATATTCAGAATTT TERM 500 324169 - 324191 + G 74 -7.8 -3.73402 | opp_overlap 324173, overlap 324185 TGATTCCTACTGGAC TACACCATGT TTT AAATGGTGTA TTTCGTACAACATCT CLK_3455 323484 - 325007 + | PTS system, maltose/glucose-specfic, IIBC component TERM 501 325026 - 325046 + T 78 -6.9 -4.84359 | opp_overlap 325026 ATATAAATATAAAAA TAGCAACTT AAA ATGTTGCTA TTTTTATAAAACTAA TERM 502 325046 - 325026 - T 83 -6.9 -5.26155 | opp_overlap 325026 ATATAAATATAAAAA TAGCAACTT AAA ATGTTGCTA TTTTTATAAAACTAA CLK_3456 325825 - 325058 - | RpiR family transcriptional regulator TERM 503 325184 - 325160 - G 74 -2.1 -5.63504 | overlap 325162 AATGCCAGAAAAAAA TCTATTTTGGG TTT CCCCAATTAAA ACAATATCAGCTTTT CLK_3457 326620 - 325841 - | RpiR family transcriptional regulator TERM 504 327067 - 327051 - g 76 -6.6 -4.39889 | opp_overlap 327050 ACAAGTATAGTAAAA TCACCA GCAGA TGGTGA AATTATAGTAGTTAT CLK_3458 326895 - 327377 + | PTS system, glucose family, EIIA component TERM 505 327440 - 327466 + G 100 -11 -5.0916 | opp_overlap 327438 327441, overlap 327441 GTTTTGTTCATAATT ACTCCTCTAAAT TTT ATTTAGAGGAGA TTTTTCTATTCAGAA TERM 506 327441 - 327465 + G 100 -14.5 -3.64773 | opp_overlap 327438 327441, overlap 327440 TTTTGTTCATAATTA CTCCTCTAAAT TTT ATTTAGAGGAG ATTTTTCTATTCAGA TERM 507 327465 - 327441 - g 100 -14.5 -2.82623 | opp_overlap 327441 327440, overlap 327438 TTTTGTTCATAATTA CTCCTCTAAAT TTT ATTTAGAGGAG ATTTTTCTATTCAGA CLK_3459 327385 - 328251 + | DNA-binding response regulator CLK_3460 328261 - 329310 + | sensor histidine kinase TERM 508 329345 - 329372 + F 76 -2.8 -5.9873 | opp_overlap 329347, overlap 329347 TAATAGCCAAAATGA AAGAGAAATC AATACAAA GATTTCTCTA TTTTTTTTATAATAA TERM 509 329347 - 329370 + F 71 -5.4 -4.6341 | opp_overlap 329347, overlap 329345 ATAGCCAAAATGAAA GAGAAATC AATACAAA GATTTCTC TATTTTTTTTATAAT CLK_3461 329430 - 330200 + | peptide ABC transporter ATP-binding protein TERM 510 331232 - 331206 - g 71 -6.6 -3.90586 | AGAGCAGGGGATAAA TTCTCATAAGGT TAT ACCTAATGGGAA AGTTGAAGATACATT CLK_3462 330214 - 332184 + | peptide ABC transporter permease TERM 511 332273 - 332309 + F 82 -9.1 -4.15565 | gap 1, opp_overlap 332280, overlap 332280 CTTAATTTTTCGATT TATAAAA-GCTTCAGA CTATAA TCTGAAGCTTTTTATA TTTTCAAATAATAAA TERM 512 332280 - 332301 + F 100 -8.8 -5.28983 | opp_overlap 332280, overlap 332273 TTTCGATTTATAAAA GCTTCAGA CTATAA TCTGAAGC TTTTTATATTTTCAA TERM 513 332301 - 332280 - f 93 -9.5 -4.42386 | opp_overlap 332280 332273 TTTCGATTTATAAAA GCTTCAGAC TATA ATCTGAAGC TTTTTATATTTTCAA alr 332424 - 333638 + | alanine racemase TERM 514 333748 - 333779 + F 78 -6.7 -4.83243 | opp_overlap 333748 333753, overlap 333753 CTTTTATAGAAATAT GAAAAGCCATCAT AAATAA GTGATGGCTTTTA TTTATTTTATGTGCA TERM 515 333753 - 333774 + F 87 -6.6 -5.28281 | opp_overlap 333753 333748, overlap 333748 ATAGAAATATGAAAA GCCATCAT AAATAA GTGATGGC TTTTATTTATTTTAT TERM 516 333774 - 333753 - f 72 -5.9 -4.5394 | opp_overlap 333748 333753, overlap 333748 ATAGAAATATGAAAA GCCATCA TAAATAAG TGATGGC TTTTATTTATTTTAT CLK_3464 334157 - 335728 + | PTS system, glucose/glucoside family, IIBC component glvA 336044 - 337369 + | maltose-6'-phosphate glucosidase TERM 517 337431 - 337472 + F 79 -8.1 -4.11394 | opp_overlap 337430 337429 337425 337433 ATTGTAAAATTAATT GAGACTGCCAAAAGTAGAT TAAA ACCTATTTTAGACAGTCTC TTTTGAAAATGAGGT CLK_3466 337552 - 338061 + | PTS system, glucose/glucoside family, IIA component CLK_3467 338346 - 339107 + | SIS domain-containing protein TERM 518 339133 - 339160 + T 81 -5.8 -5.31545 | TTTAGTATTAGATTT CATAATAATG TTTTATTT CATTATTATG TTTTTTAATATTATT CLK_3468 339264 - 339145 - | hypothetical protein CLK_3469 339576 - 339773 + | cold shock protein TERM 519 339789 - 339817 + F 100 -12.6 -5.05712 | TTAATGAATATTTTA CCCCTTGAATAG CTAGT CTATTTAAGGGG TTTTTAGTTGTTTAT CLK_3470 339919 - 340035 + | hypothetical protein CLK_3471 340116 - 340670 + | hypothetical protein CLK_3472 341106 - 341537 + | rrf2 family protein CLK_3473 341693 - 342298 + | 2-hydroxychromene-2-carboxylate isomerase family protein CLK_3474 342325 - 342963 + | hypothetical protein TERM 520 343060 - 343095 + F 90 -7.8 -4.96848 | opp_overlap 343060 TAATAGAGGTTAAAA TAGTCACTTAGGTT TTGTGAGC AGCTTAAGTGACTA TTTTTCTATAGAAAA CLK_3475 343349 - 344677 + | sugar ABC transporter, sugar-binding protein TERM 521 344683 - 344702 + F 91 -10.8 -3.65294 | overlap 344680 ACAAAATTAATTTGA TCCTGCTT TTTT AAGCAGGA TTCCTTTATGTAAAA CLK_3476 344781 - 345674 + | binding-protein-dependent transport systems inner membrane component CLK_3477 345671 - 346519 + | binding-protein-dependent transport systems inner membrane component CLK_3478 346520 - 347647 + | putative methylcobamide:CoM methyltransferase CLK_3479 347649 - 348737 + | carbohydrate ABC transporter ATP-binding protein TERM 522 349050 - 349077 + F 70 -7.1 -3.69992 | TTTAAGAAAAAAGCC GGACTATACTG GGAAAA TAGTATGGTCC TTACTTTATGTATTT CLK_3480 349205 - 349966 + | putative transcriptional regulator TERM 523 349990 - 349967 - f 72 -8.2 -3.16921 | opp_overlap 349967 AGTAATGTTGAGTAA CGTGTTATCT AAAG AGGTAACACG TTTTTTACATAAGAA TERM 524 349967 - 349990 + F 100 -10.4 -5.08824 | opp_overlap 349967 AGTAATGTTGAGTAA CGTGTTATCT AAAG AGGTAACACG TTTTTTACATAAGAA TERM 525 350023 - 350008 - f 70 -4.8 -4.84311 | opp_overlap 350008 TTTTACATAAGAAAA TCTATA TACA TATAGA TATCTAATTATTATA CLK_3481 350085 - 351668 + | PTS system, glucose/maltose-specfic, IIBC component TERM 526 351687 - 351710 + F 82 -9.7 -3.32521 | overlap 351680 AAAAAATTTAGTTAG GAGTGACTA TTAATT TAGTCACTC TTATAAAAATATAGT glvA 351934 - 353268 + | maltose-6'-phosphate glucosidase CLK_3483 353281 - 353754 + | PTS system, glucose/maltose-specific, IIA component TERM 527 353800 - 353838 + F 71 -6.7 -4.07568 | opp_overlap 353804, overlap 353802 353804 TAAAATATATTTAGT AAAAGCTCGGAAAGTGG ATATA CCATGTTCCGAGCTATG TTTTAAACAAGAAGC TERM 528 353802 - 353836 + F 83 -9.3 -3.63744 | opp_overlap 353804, overlap 353800 353804 AAATATATTTAGTAA AAGCTCGGAAAGTGG ATATA CCATGTTCCGAGCTA TGTTTTAAACAAGAA TERM 529 353804 - 353834 + F 95 -11.9 -3.39908 | opp_overlap 353804, overlap 353802 353800 ATATATTTAGTAAAA GCTCGGAAAGTGG ATATA CCATGTTCCGAGC TATGTTTTAAACAAG TERM 530 353834 - 353804 - f 89 -9.7 -4.3014 | opp_overlap 353804 353802 353800 ATATATTTAGTAAAA GCTCGGAAAGTGG ATATA CCATGTTCCGAGC TATGTTTTAAACAAG TERM 531 354760 - 354774 + G 77 -7.2 -4.24204 | opp_overlap 354759 TTGATAGAATACATC GATATG CTC CATATC TTTTAAATATACGTC ilvD 353892 - 355607 + | dihydroxy-acid dehydratase eda 355659 - 356306 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase CLK_3486 356308 - 357312 + | putative 2-dehydro-3-deoxygluconokinase CLK_3487 357478 - 357347 - | hypothetical protein TERM 532 357585 - 357573 - g 71 -4.8 -4.71234 | overlap 357568 AAATTTAATACAAAA CCTC TTTGG GAGG TAAGTAAAACTTTAT ade 357549 - 359348 + | adenine deaminase CLK_3489 359751 - 360428 + | DNA-binding response regulator CLK_3490 360428 - 361813 + | sensor histidine kinase CLK_3491 362210 - 363178 + | glycosyl transferase, group 2 family protein CLK_3492 363162 - 363581 + | putative cell wall teichoic acid glycosylation protein GtcA TERM 533 364250 - 364240 - g 76 -5.4 -5.10767 | opp_overlap 364240 GATTTAATATAAAAA TGCT TCA AGCA TATATGATAATACCA CLK_3493 363699 - 365978 + | dolichyl-phosphate-mannose-protein mannosyltransferase family protein TERM 534 366019 - 366040 + F 100 -14.5 -4.74917 | ATATAATGTTTCAGA CCCACCACA GAAA TGTGGTGGG TTTTATGTATTTAAT TERM 535 366245 - 366199 - f 82 -5.5 -5.59962 | opp_overlap 366208, overlap 366203 366205 TAAAATAAATAAAAA GAAATATAATATATGATAATG AATTA CATTATCATATATTAAATGTG AATTATATAAACATT TERM 536 366241 - 366203 - f 100 -10.7 -5.1502 | opp_overlap 366208, overlap 366199 366205 ATAAATAAAAAGAAA TATAATATATGATAATG AATTA CATTATCATATATTAAA TGTGAATTATATAAA TERM 537 366239 - 366205 - f 100 -13.3 -4.15156 | opp_overlap 366208, overlap 366203 366199 AAATAAAAAGAAATA TAATATATGATAATG AATTA CATTATCATATATTA AATGTGAATTATATA TERM 538 366208 - 366236 + F 87 -10.6 -3.1479 | opp_overlap 366205 366203 366199 TAAAAAGAAATATAA TATATGATAATG AATTA CATTATCATATA TTAAATGTGAATTAT CLK_3494 366319 - 367356 + | AraC family transcriptional regulator TERM 539 367384 - 367411 + F 83 -7.8 -4.63486 | gap 1, overlap 367386 TTTTATTTATTTGAA T-TGCCACAGGTA TAG TACCTGTGGCTTA TTTTATTGGAGAAAT TERM 540 367386 - 367408 + F 100 -16.4 -4.43307 | overlap 367384 TTATTTATTTGAATT GCCACAGGTA TAG TACCTGTGGC TTATTTTATTGGAGA CLK_3495 367619 - 368650 + | iron chelate ABC transporter solute-binding protein CLK_3496 368653 - 369771 + | iron chelate ABC transporter permease protein CLK_3497 369773 - 370543 + | iron chelate ABC transporter ATP-binding protein TERM 541 371051 - 371069 + G 78 -10.4 -2.81487 | overlap 371050 371048 TTTGCTACGTTCCAT TGGAGATT CAA AATCTCCA CTATATTTTTTGATT TERM 542 371385 - 371398 + G 74 -8.1 -3.63569 | GGAACTACTGTTATG GCTGC CTTT GCAGC TTGTTCAAAGATTGA CLK_3498 370578 - 371906 + | MATE efflux family protein TERM 543 371914 - 371943 + T 77 -8.8 -3.29947 | gap 1, opp_overlap 371916 371918, overlap 371916 371918 CAATATAATTATATA GA-TAGGAGTGTT ATATG AACACTCCTACTC TTAGTGTACTCAGTA TERM 544 371940 - 371916 - T 90 -11.6 -3.07506 | opp_overlap 371914 371916 371918, overlap 371918 ATATAATTATATAGA TAGGAGTGTT ATATG AACACTCCTA CTCTTAGTGTACTCA TERM 545 371916 - 371940 + T 85 -11.6 -2.52519 | opp_overlap 371916 371918, overlap 371914 371918 ATATAATTATATAGA TAGGAGTGTT ATATG AACACTCCTA CTCTTAGTGTACTCA TERM 546 371918 - 371938 + T 80 -9.8 -2.79589 | opp_overlap 371916 371918, overlap 371916 371914 ATAATTATATAGATA GGAGTGTT ATATG AACACTCC TACTCTTAGTGTACT TERM 547 371938 - 371918 - T 82 -9.8 -3.0868 | opp_overlap 371918 371916 371914, overlap 371916 ATAATTATATAGATA GGAGTGTT ATATG AACACTCC TACTCTTAGTGTACT CLK_3499 373022 - 372051 - | AraC family transcriptional regulator CLK_3500 373420 - 374358 + | iron compound ABC transporter, iron compound-binding protein CLK_3501 374560 - 375588 + | ferrichrome transport system permease protein FhuB CLK_3502 375585 - 376592 + | ferrichrome transport system permease protein FhuG TERM 548 376874 - 376861 - g 80 -2.3 -5.82388 | overlap 376862 AAATTGCAAAAAAAA TGGCA ATTT TGCCT CAGAGCCCTCAATCA CLK_3503 376626 - 377450 + | ferrichrome transport ATP-binding protein FhuC TERM 549 378116 - 378089 - g 76 -8.7 -3.40867 | opp_overlap 378082 GCATTTACTAATGAA TCTTATGAAAT TAATAG ATTTCATAAGA ATAATCATAAGTTCT CLK_3504 377447 - 379174 + | lipid A export ATP-binding/permease protein MsbA TERM 550 379287 - 379325 + F 83 -9.2 -3.60627 | opp_overlap 379292, overlap 379292 ATATAGTTATATTAT TAAAATTATGCATTTTAT AAT ACAAAATGCATAATTTTC TTTAAAATGAAGTAA TERM 551 379320 - 379292 - f 100 -11.3 -4.33274 | opp_overlap 379292 379287 GTTATATTATTAAAA TTATGCATTTTAT AAT ACAAAATGCATAA TTTTCTTTAAAATGA TERM 552 379292 - 379320 + F 93 -9.1 -4.88918 | opp_overlap 379292, overlap 379287 GTTATATTATTAAAA TTATGCATTTTAT AAT ACAAAATGCATAA TTTTCTTTAAAATGA TERM 553 379538 - 379558 + F 100 -12.7 -5.79595 | opp_overlap 379538 TTGTTATGAACTCAA CACCTCAAT TTG ATTGAGGTG TTTTTTGTTTTACAA TERM 554 379558 - 379538 - f 95 -12.7 -3.20723 | opp_overlap 379538 TTGTTATGAACTCAA CACCTCAAT TTG ATTGAGGTG TTTTTTGTTTTACAA CLK_3505 379676 - 380977 + | xanthine/uracil permease family protein TERM 555 381359 - 381336 - g 75 -4.7 -5.11613 | opp_overlap 381336 ACATTATCTAAAAAA TATATTGCC AAAGAG GACAATATA TTAATTATAGATGAC xpt 381000 - 381572 + | xanthine phosphoribosyltransferase CLK_3507 382159 - 382851 + | DNA-binding response regulator CLK_3508 382864 - 383844 + | sensor histidine kinase TERM 556 383869 - 383910 + F 88 -6.6 -5.53079 | opp_overlap 383867 383869 383870, overlap 383870 TTAAATATAAGAAGA GGCTGTCGCATTAGAATA AAAAAA TATGCTAACGCGGCAGCG TTTTTTATGTGTTTT TERM 557 383870 - 383909 + F 93 -10.1 -3.88187 | opp_overlap 383869 383867 383870, overlap 383869 TAAATATAAGAAGAG GCTGTCGCATTAGAATA AAAAAA TATGCTAACGCGGCAGC GTTTTTTATGTGTTT TERM 558 383909 - 383870 - f 79 -10.1 -2.75036 | opp_overlap 383870 383869, overlap 383869 383867 TAAATATAAGAAGAG GCTGTCGCATTAGAATA AAAAAA TATGCTAACGCGGCAGC GTTTTTTATGTGTTT TERM 559 384028 - 384064 + F 76 -3 -5.87996 | opp_overlap 384031, overlap 384030 384031 TTGTTTTTGCAGGAA AAAGCTGTCGCATTAA TTTTT TTAGTGTGGCAGCCTC TTTTTTTATTAATTA TERM 560 384030 - 384062 + F 71 -5.6 -4.55661 | opp_overlap 384031, overlap 384028 384031 GTTTTTGCAGGAAAA AGCTGTCGCATTAA TTTTT TTAGTGTGGCAGCC TCTTTTTTTATTAAT TERM 561 384031 - 384061 + F 77 -9.1 -3.30957 | opp_overlap 384031, overlap 384030 384028 TTTTTGCAGGAAAAA GCTGTCGCATTAA TTTTT TTAGTGTGGCAGC CTCTTTTTTTATTAA CLK_3509 384186 - 385043 + | putative undecaprenol kinase TERM 562 385280 - 385264 - g 70 -8.1 -3.05613 | overlap 385250 385263 ATAAAAGATAAGAAT CCTTTAA CAC TTAAAGG GGAGGATTTAGCTTT CLK_3510 385057 - 385803 + | peptide ABC transporter ATP-binding protein TERM 563 386694 - 386704 + G 78 -6.8 -4.65895 | TTTACATCTATTGGA GCTG TGT CAGC TTTTTGGATAAACAA CLK_3511 385803 - 387665 + | peptide ABC transporter permease CLK_3512 388083 - 388439 + | lrgA family protein CLK_3513 388442 - 389137 + | lrgB-like family protein TERM 564 389214 - 389252 + F 100 -17.8 -5.30155 | opp_overlap 389214 AATTAATTTTAGAAA GAGGATGTCTCAAAAT AGATTTA ATTTTGAGACATCCTC TTTTTTAGTTAATGA TERM 565 389252 - 389214 - f 100 -17.8 -3.93638 | opp_overlap 389214 AATTAATTTTAGAAA GAGGATGTCTCAAAAT AGATTTA ATTTTGAGACATCCTC TTTTTTAGTTAATGA TERM 566 389327 - 389315 - f 70 -3.5 -5.29385 | AATTCAATTAAAAAA TTAAT ATT ATTAA AATTTATAGTTAACT TERM 567 389418 - 389388 - f 75 -7.2 -4.32233 | opp_overlap 389390 389393 389399 ACAAAAAGCTCAAAA TATAATATATTTAT TTT AAAAATATATTATA ATTAGGGGGACAATA TERM 568 389862 - 389848 - g 70 -8.6 -2.56601 | overlap 389826 389844 389845 389847 TTGACGAAAAAGCAG CAACAG ATG CTGTTG AAGAAGTTAAAAAAA CLK_3514 389433 - 390083 + | putative lipoprotein TERM 569 390109 - 390076 - f 80 -9.3 -3.1886 | opp_overlap 390081 390085, overlap 390081 390085 390093 AGTTAACTTCAGGAA TAAAATAAATTTTAT AAGA ATAAAATTTATTCTA TACATAATAATACAG TERM 570 390104 - 390081 - f 79 -7 -4.71828 | opp_overlap 390081 390085, overlap 390076 390085 390093 ACTTCAGGAATAAAA TAAATTTTAT AAGA ATAAAATTTA TTCTATACATAATAA TERM 571 390184 - 390218 + F 100 -11.6 -5.22006 | opp_overlap 390188, overlap 390185 390188 AATTATATATTTATA CTAAGGAGATGGAAAA GGA TTTACCATCTCCTTAA TTTTTATTATAATAA TERM 572 390185 - 390217 + F 100 -15.1 -3.72119 | opp_overlap 390188, overlap 390184 390188 ATTATATATTTATAC TAAGGAGATGGAAAA GGA TTTACCATCTCCTTA ATTTTTATTATAATA TERM 573 390188 - 390214 + F 100 -12.4 -3.96481 | opp_overlap 390188, overlap 390185 390184 ATATATTTATACTAA GGAGATGGAAAA GGA TTTACCATCTCC TTAATTTTTATTATA TERM 574 390214 - 390188 - f 93 -12.4 -3.2918 | opp_overlap 390188 390185 390184 ATATATTTATACTAA GGAGATGGAAAA GGA TTTACCATCTCC TTAATTTTTATTATA TERM 575 390822 - 390808 - g 80 -8.6 -3.76321 | opp_overlap 390806 390808 AGCAACTAAAAGTAA TCTCGT AGT ACGAGA TATTGATATTTTAAA TERM 576 390808 - 390822 + G 74 -8.6 -3.33884 | opp_overlap 390808, overlap 390806 AGCAACTAAAAGTAA TCTCGT AGT ACGAGA TATTGATATTTTAAA CLK_3515 390452 - 391351 + | radical SAM domain-containing protein CLK_3516 391486 - 392994 + | hypothetical protein TERM 577 393061 - 393007 - f 100 -11 -4.3341 | opp_overlap 393010, overlap 393008 393010 TAAAATTAATATAAA TTACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGTTT TTTATTTTCTATGAA TERM 578 393060 - 393008 - f 100 -14.5 -3.18419 | opp_overlap 393010, overlap 393007 393010 AAAATTAATATAAAT TACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGTT TTTTATTTTCTATGA TERM 579 393058 - 393010 - f 100 -17.1 -3.12856 | opp_overlap 393010, overlap 393008 393007 AATTAATATAAATTA CATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATG TTTTTTATTTTCTAT TERM 580 393010 - 393058 + F 100 -19.3 -5.8901 | opp_overlap 393010 393008 393007 AATTAATATAAATTA CATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATG TTTTTTATTTTCTAT TERM 581 393395 - 393376 - g 70 -5 -4.54205 | opp_overlap 393376 AGGATATGAAATAAA GCCATTAT TTAA ATCATGGC ATATTTATCCTGTGG TERM 582 393559 - 393571 + G 71 -4.9 -4.7261 | ATATACAAGTGCTAT TATAG GGG CTATA TTTATTTTAATAGGT CLK_3517 393317 - 393868 + | hypothetical protein CLK_3518 394046 - 394513 + | hypothetical protein CLK_3519 394506 - 395195 + | putative accessory gene regulator protein B CLK_3520 395179 - 395313 + | putative lipoprotein TERM 583 395326 - 395342 + F 100 -10.9 -4.44667 | opp_overlap 395323 TAAAAAAGAGATCGA GATCGGT TTA ACCGATC TTTCTTGTTAGAAAA TERM 584 395547 - 395525 - g 74 -5 -4.91109 | opp_overlap 395525 395528 GTTGGACTATAAAAA TAATATGTCT GCT ATACATATTA TTTCTACTACTATAT TERM 585 396546 - 396526 - g 93 -8.5 -5.16841 | TTACATCAATAAAAA CATTAATAA GTG TTATTAATG CGAAAGATAGGTATA TERM 586 396725 - 396715 - g 86 -3.2 -5.99154 | overlap 396717 TATTAAATAAAAAAA TGCC CTT AGCA AAGGAAGAATGGGAA CLK_3521 395385 - 397088 + | GGDEF/HD domain-containing protein TERM 587 397287 - 397251 - f 100 -13.3 -4.0641 | opp_overlap 397251 397252, overlap 397252 TTGTATGTAGATAAA TCCTATTATAAATGCAA AAT TTGCACTTATAATAGGG TTTTTTATTATGTTA TERM 588 397251 - 397287 + F 100 -13.3 -5.64304 | opp_overlap 397251 397252, overlap 397252 TTGTATGTAGATAAA TCCTATTATAAATGCAA AAT TTGCACTTATAATAGGG TTTTTTATTATGTTA TERM 589 397252 - 397286 + F 100 -14.6 -3.96142 | opp_overlap 397251 397252, overlap 397251 TGTATGTAGATAAAT CCTATTATAAATGCAA AAT TTGCACTTATAATAGG GTTTTTTATTATGTT TERM 590 397286 - 397252 - f 100 -16.8 -3.03525 | opp_overlap 397252 397251, overlap 397251 TGTATGTAGATAAAT CCTATTATAAATGCAA AAT TTGCACTTATAATAGG GTTTTTTATTATGTT CLK_3522 397319 - 397828 + | acetyltransferase TERM 591 397916 - 397954 + F 79 -8.4 -4.07885 | opp_overlap 397923, overlap 397923 ATCAAATAATAGTTA TGAAAAGCCATATGCAAT ATA AATGTATATGGTTTTTTA TTTTCAGCAAAAATG TERM 592 397923 - 397947 + F 90 -6.5 -5.79595 | opp_overlap 397923, overlap 397916 AATAGTTATGAAAAG CCATATGCAAT ATA AATGTATATGG TTTTTTATTTTCAGC CLK_3523 398226 - 398678 + | hypothetical protein CLK_3524 398705 - 400552 + | sensory box histidine kinase TERM 593 400564 - 400614 + F 100 -18.2 -5.47159 | opp_overlap 400557 400569 400573, overlap 400557 400560 400569 ATAAATAATTATTTA TGAAATAAATTCTCTAAAATTGAA TAC TACAATTTTAGAGAATTTATTTTA TTTTTATTTATTAAA TERM 594 400569 - 400609 + F 100 -15.9 -5.48028 | opp_overlap 400557 400569 400573, overlap 400557 400560 400564 TAATTATTTATGAAA TAAATTCTCTAAAATTGAA TAC TACAATTTTAGAGAATTTA TTTTATTTTTATTTA TERM 595 400609 - 400569 - f 100 -15.9 -3.7791 | opp_overlap 400557 400560 400569 400564, overlap 400557 400573 TAATTATTTATGAAA TAAATTCTCTAAAATTGAA TAC TACAATTTTAGAGAATTTA TTTTATTTTTATTTA TERM 596 400605 - 400573 - f 100 -12.3 -4.50627 | opp_overlap 400569 400564, overlap 400569 TATTTATGAAATAAA TTCTCTAAAATTGAA TAC TACAATTTTAGAGAA TTTATTTTATTTTTA CLK_3525 400808 - 401245 + | hypothetical protein CLK_3526 401232 - 401861 + | putative accessory gene regulator protein B CLK_3527 401956 - 402090 + | hypothetical protein TERM 597 402097 - 402138 + F 100 -11.1 -4.23529 | opp_overlap 402088 402101, overlap 402101 402133 AGAAAATAAAAATTT TAAATAGTGTATAGGGAAG GAAA CTTACCTATACGCTATATA TTTATATATTAATAT TERM 598 402101 - 402134 + F 95 -11.9 -3.42088 | opp_overlap 402101, overlap 402097 402133 AATAAAAATTTTAAA TAGTGTATAGGGAAG GAAA CTTACCTATACGCTA TATATTTATATATTA TERM 599 402134 - 402101 - f 84 -9.7 -3.8297 | opp_overlap 402097 402101 402133 AATAAAAATTTTAAA TAGTGTATAGGGAAG GAAA CTTACCTATACGCTA TATATTTATATATTA TERM 600 402227 - 402245 + G 85 -4.6 -5.60689 | AATATAACTTGTATA GTAAAGTT AAT ATCTTTAC TTTTTTCTTCTATAA TERM 601 403549 - 403537 - g 70 -3.5 -5.04601 | opp_overlap 403537 TGCAGAAAGTAAAAA TATAA ATA TTATA TTTGATACAGATGTT TERM 602 403924 - 403908 - g 84 -9.5 -3.77491 | overlap 403906 AATTTATAATAAACA TACCAGT TAA ACTGGTA AAAGAAGATTTAGAA CLK_3528 402173 - 404026 + | sensory box histidine kinase TERM 603 404146 - 404181 + F 74 -5.1 -5.09521 | gap 1, opp_overlap 404146 404149 AAATAGAAGTTTAAA TAGGCTATATT-TATT AAAAA AATATAATATAGCTTA TTTTTGATTTATTAA CLK_3529 404259 - 405125 + | PP-loop family protein CLK_3530 405794 - 405249 - | DNA-binding protein TERM 604 405712 - 405699 - G 72 -5.3 -4.83615 | opp_overlap 405699 CACCTGTGATAAAAA GCTTA TAGA TAAGC CTGTTTTTTCACTAA TERM 605 405894 - 405857 - H 100 -10.9 -3.9461 | opp_overlap 405856 405859 405865 405869 TTCTTTCAATAATAA TAGCATAATAACCTTGA TAAT TCAAGATTATTATCCTA ATATTAGAAAAATAT TERM 606 405999 - 405986 - H 80 -2.5 -6.04953 | overlap 405995 ATATAAACAAAAAAA TAATA AATT TATTA CAGTAAACGATAAAA TERM 607 406838 - 406828 - g 78 -4 -5.44721 | ATGATGCTAAAAAAA CTTT CCC AAAG GCAATTTTAATATCA TERM 608 407371 - 407358 - g 74 -5.3 -4.90321 | opp_overlap 407358 AAAAATAATAGAAAA GCTAT ATTT ATAGC TAATATGGTACTTAT CLK_3531 406149 - 407555 + | amino acid permease family protein TERM 609 407569 - 407591 + F 83 -9.2 -3.55761 | opp_overlap 407569 AGAAATATGAATAAA GAGGCTATCT AAA GGATAGTCTC TTTCACAAATAAATA TERM 610 407591 - 407569 - f 70 -6.3 -4.37337 | opp_overlap 407569 AGAAATATGAATAAA GAGGCTATC TAAAG GATAGTCTC TTTCACAAATAAATA TERM 611 407725 - 407714 - g 74 -2.2 -5.64006 | opp_overlap 407724 AGGGAATGAAAAAAA GAGA AATT CCTC AAATGTTGATTTCAG CLK_3532 407668 - 408750 + | M24 family metallopeptidase TERM 612 408863 - 408819 - f 72 -4 -5.29445 | gap 1, opp_overlap 408819 CTTTAATAATAAAAA TAACTATGTAAGAAATATATT TTAA AGTATATTTTTT-CATAGTTA TTTTTTATATATAAT TERM 613 408819 - 408863 + F 100 -8.4 -5.43414 | gap 1, opp_overlap 408819 CTTTAATAATAAAAA TAACTATGTAAGAAATATATT TTAA AGTATATTTTTT-CATAGTTA TTTTTTATATATAAT TERM 614 411115 - 411133 + G 70 -8.2 -3.09834 | opp_overlap 411130 AAAGGGATTAACTGC TGCATCAG GAA TTGATGCA TTAACTCATGCAGTA adhE 409178 - 411766 + | aldehyde-alcohol dehydrogenase TERM 615 411864 - 411909 + F 100 -21.7 -5.28778 | opp_overlap 411864 CATTTATACAAAAAA TAATGCTGTTTCAAAATAGAG TTAA CTTTATTTTGAAACAGCATTA TTTTTTATAAATGAT TERM 616 411909 - 411864 - f 100 -19.5 -5.38047 | opp_overlap 411864 CATTTATACAAAAAA TAATGCTGTTTCAAAATAGAG TTAA CTTTATTTTGAAACAGCATTA TTTTTTATAAATGAT CLK_3534 412085 - 412372 + | hypothetical protein CLK_3535 412435 - 413025 + | hypothetical protein TERM 617 413284 - 413338 + T 100 -21.9 -5.54079 | opp_overlap 413284 413289 TATAAAAAGCATTAA TAAAATACAACTTGATGTCCCAAGG CTTTA CATTGGGACATCAAGTTGTATTTTC TTTTTTACTTTTTCA TERM 618 413338 - 413284 - T 100 -22.6 -3.43187 | opp_overlap 413284, overlap 413289 TATAAAAAGCATTAA TAAAATACAACTTGATGTCCCAAGGC TTT ACATTGGGACATCAAGTTGTATTTTC TTTTTTACTTTTTCA TERM 619 413333 - 413289 - T 100 -22.5 -4.76123 | opp_overlap 413284, overlap 413284 AAAGCATTAATAAAA TACAACTTGATGTCCCAAGGC TTT ACATTGGGACATCAAGTTGTA TTTTCTTTTTTACTT CLK_3536 413790 - 413311 - | hypothetical protein TERM 620 413625 - 413637 + g 83 -3.4 -5.68039 | opp_overlap 413625 TTCCTATAAACTTAA GATG ACCTA CATC TTTTTTTGTAAGTTT TERM 621 413741 - 413729 - G 73 -9.1 -2.66787 | TTAACATGTATATTA GCTGC TAC GCAGC TAGAGTGAGCACCTC TERM 622 414018 - 413980 - R 100 -14.9 -4.87291 | opp_overlap 413978 413989, overlap 413982 GAGTGTAATTAAAAA TCCACCTAATTTCTCAC AAGAG GTAAGAAATTAGGTGAA AACTTATAAATCTAT TERM 623 414016 - 413982 - R 100 -15.3 -2.70268 | opp_overlap 413978 413989, overlap 413980 GTGTAATTAAAAATC CACCTAATTTCTCAC AAGAG GTAAGAAATTAGGTG AAAACTTATAAATCT CLK_3537 415143 - 414133 - | hypothetical protein CLK_3538 415247 - 415774 + | PAP2 family protein TERM 624 415807 - 415844 + F 100 -13.1 -4.09243 | opp_overlap 415797 415813, overlap 415813 GATAATGAGGATGTC TCAAAATAGCCTTAATT TTAA AATTAAGGCTATTTTTA TTTTGAGACACTCTC TERM 625 415838 - 415813 - f 100 -12.1 -4.10161 | opp_overlap 415813 415807 GAGGATGTCTCAAAA TAGCCTTAATT TTAA AATTAAGGCTA TTTTTATTTTGAGAC TERM 626 415813 - 415838 + F 100 -12.1 -5.45802 | opp_overlap 415813, overlap 415807 GAGGATGTCTCAAAA TAGCCTTAATT TTAA AATTAAGGCTA TTTTTATTTTGAGAC TERM 627 415849 - 415859 + F 73 -5.4 -4.74767 | GGCTATTTTTATTTT GAGA CAC TCTC TTTTATGTTCATTAT CLK_3539 416170 - 416982 + | polysaccharide deacetylase family protein CLK_3540 417090 - 417776 + | DNA-binding response regulator CLK_3541 417786 - 419180 + | sensor histidine kinase TERM 628 419719 - 419699 - g 90 -4.8 -5.7946 | overlap 419701 419706 GTTTTAACAAAAAAA TCCAATAG CTCAT CTATTGAA CCTAAACACAATATA CLK_3542 419243 - 420733 + | putative lipoprotein CLK_3543 420777 - 421343 + | hypothetical protein TERM 629 421952 - 421990 + G 85 -8.4 -4.40003 | opp_overlap 421949, overlap 421946 421954 CTTCAAAATTTATAG TCCCTGTAATTTTAGTTA TAC TAACTACAATTATAGGAA TTTATGTTTATAAAA TERM 630 421954 - 421988 + G 82 -11 -2.53244 | opp_overlap 421949, overlap 421946 421952 TCAAAATTTATAGTC CCTGTAATTTTAGTTA TAC TAACTACAATTATAGG AATTTATGTTTATAA CLK_3544 421369 - 422043 + | DedA family protein TERM 631 422128 - 422078 - T 100 -16.6 -3.82208 | opp_overlap 422078 422084, overlap 422084 422087 TAGTAAACATTTAAA TAATAAGAAGGTGTTTCAAAATAA AAT CTATTTTGAGACACCTTCTTTTTA GTTTAGATATTTAAA TERM 632 422078 - 422128 + T 100 -18.1 -2.882 | opp_overlap 422078 422084 422087, overlap 422084 TAGTAAACATTTAAA TAATAAGAAGGTGTTTCAAAATA AAATC TATTTTGAGACACCTTCTTTTTA GTTTAGATATTTAAA TERM 633 422084 - 422122 + T 100 -17.1 -5.00138 | opp_overlap 422084 422078 422087, overlap 422078 ACATTTAAATAATAA GAAGGTGTTTCAAAATA AAATC TATTTTGAGACACCTTC TTTTTAGTTTAGATA TERM 634 422122 - 422084 - T 100 -15.6 -4.11346 | opp_overlap 422078 422084, overlap 422078 422087 ACATTTAAATAATAA GAAGGTGTTTCAAAATAA AAT CTATTTTGAGACACCTTC TTTTTAGTTTAGATA TERM 635 422119 - 422087 - T 100 -11.5 -4.16033 | opp_overlap 422084 422078, overlap 422084 422078 TTTAAATAATAAGAA GGTGTTTCAAAATAA AAT CTATTTTGAGACACC TTCTTTTTAGTTTAG CLK_3545 424772 - 422184 - | putative diguanylate cyclase TERM 636 423018 - 423030 + g 88 -7.7 -4.91873 | opp_overlap 423017 TTTGGCCGCATACAT TGCAG CAT CTGCA TTTTTCATTAGTGTA TERM 637 423392 - 423406 + g 93 -5.8 -6.15717 | TACTTATAGTTTTAT TTATAG TTT CTATAA TTTTTTTTCTATTTG TERM 638 424963 - 424915 - R 93 -7.9 -5.22794 | opp_overlap 424904 424918 424920, overlap 424904 424922 AGAATTATTAAAAAA TAATATATATCTATTATAATATA TAT TAGCTTATAATAGGTATATATTA TAATAGATAAAATTT CLK_3546 426247 - 425060 - | hypothetical protein TERM 639 427007 - 427048 + G 95 -6.1 -5.78622 | CAAGAGGGGATATAC TTAAAATAGCTAATGTTTT TAAT AAGACAATGGCTATTTCAA TTTTTTTTAAAATGA CLK_3547 426631 - 427971 + | MATE efflux family protein TERM 640 428092 - 428063 - f 73 -6.7 -4.28977 | opp_overlap 428052 428063, overlap 428052 ACAATATATTTAAAA TTCTATAAATATA TTTC TAAATTTATAGAA TATACTTGAAATTAC CLK_3548 428165 - 428731 + | HD domain-containing protein TERM 641 428866 - 428836 - f 100 -7.6 -5.40014 | opp_overlap 428836 AAATAAGAACAAAAA GGAAACCCTAACAT ATA ATAAAAGGGTTTCC TTTAGTTTTTATAGA TERM 642 428967 - 428957 - f 75 -4 -5.57396 | opp_overlap 428957, overlap 428950 ATAATTAACAAAAAA CTTT TGA AAAG TATATTGTAATTTAA CLK_3549 429043 - 430311 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 643 430395 - 430443 + T 73 -7.1 -4.16146 | gap 1, opp_overlap 430376 430396, overlap 430396 ATTATAAAGGTATAA ATTAACACCTATAAG-TTATAG GAAATA CTACAAACTTATAGGTGTTAAA TTTTAACCATATTTT TERM 644 430442 - 430396 - T 100 -12.8 -4.04319 | gap 1, opp_overlap 430395 430396, overlap 430376 TTATAAAGGTATAAA TTAACACCTATAAGTT-ATAG GAAATA CTACAAACTTATAGGTGTTAA ATTTTAACCATATTT TERM 645 430396 - 430442 + T 85 -10.6 -3.08603 | gap 1, opp_overlap 430376 430396, overlap 430395 TTATAAAGGTATAAA TTAACACCTATAAG-TTATAG GAAATA CTACAAACTTATAGGTGTTAA ATTTTAACCATATTT CLK_3550 431768 - 430446 - | aminotransferase, class V TERM 646 431927 - 431952 + H 82 -9.3 -3.34222 | opp_overlap 431926 431925 431933, overlap 431933 431948 TTATAAAAATAGAGT TTATAATAAGT AAAT ACTTATTATAA TTATAAAATAATAAT CLK_3551 432076 - 433086 + | hypothetical protein TERM 647 433112 - 433082 - f 100 -14.2 -3.68261 | opp_overlap 433084 433087, overlap 433084 433087 433092 TTATAACAGGGCAAA TATAAGGAAAGTGC GAC GCACTTTCCTTATT TATATTAAGAAAGTA TERM 648 433110 - 433084 - f 100 -16.8 -3.41704 | opp_overlap 433084 433087, overlap 433082 433087 433092 ATAACAGGGCAAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTATATTAAGAAAG TERM 649 433084 - 433110 + F 100 -16.8 -4.1891 | opp_overlap 433082 433084 433087 433092, overlap 433087 ATAACAGGGCAAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTATATTAAGAAAG TERM 650 433087 - 433107 + F 100 -14.1 -4.21773 | opp_overlap 433084 433082 433087 433092, overlap 433084 ACAGGGCAAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTATATTAAGA TERM 651 433107 - 433087 - f 100 -14.1 -3.83347 | opp_overlap 433087 433084, overlap 433084 433082 433092 ACAGGGCAAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTATATTAAGA TERM 652 433102 - 433092 - f 71 -6.8 -4.11501 | opp_overlap 433087 433084, overlap 433087 433084 433082 GCAAATATAAGGAAA GTGC GAC GCAC TTTCCTTATTTATAT CLK_3552 433218 - 433892 + | hypothetical protein CLK_3553 433838 - 434536 + | DNA-binding response regulator CLK_3554 434526 - 436040 + | sensor histidine kinase TERM 653 436047 - 436078 + F 100 -15.4 -2.68719 | opp_overlap 436047 436043 436053, overlap 436053 GATGAATAAAATTTA TTGAAACCTGATGC AATT GCATCAGGTTTTAA GTTATAATATAATGA TERM 654 436078 - 436047 - f 93 -13.2 -2.85912 | opp_overlap 436047 436053, overlap 436043 436053 GATGAATAAAATTTA TTGAAACCTGATGC AATT GCATCAGGTTTTAA GTTATAATATAATGA TERM 655 436053 - 436072 + F 100 -12.2 -4.33151 | opp_overlap 436047 436043 436053, overlap 436047 TAAAATTTATTGAAA CCTGATGC AATT GCATCAGG TTTTAAGTTATAATA TERM 656 436072 - 436053 - f 95 -12.2 -3.71148 | opp_overlap 436053 436047, overlap 436047 436043 TAAAATTTATTGAAA CCTGATGC AATT GCATCAGG TTTTAAGTTATAATA CLK_3555 436148 - 437563 + | sodium:solute symporter family protein TERM 657 438293 - 438277 - f 79 -3.8 -5.66229 | opp_overlap 438277 AGGAACAAGAAAAAA TTACAA AAAAA TTGTAA TTTTCAAACAAATAA TERM 658 438830 - 438817 - g 70 -3.8 -5.055 | TTAACTTTTAAAAAA GGTG TACATC CACC ACATGGAAAATACCT TERM 659 439065 - 439038 - g 83 -7 -5.10029 | AGGAACTGTAAAAAA TCTTGCTCCAGT ATTA ACTGCAGCAGGA ACAAAGGTAATGGCA CLK_3556 438793 - 440112 + | electron transport complex, RnfABCDGE type, C subunit TERM 660 440229 - 440249 + G 73 -8.3 -3.49486 | overlap 440226 TTGTAATAGCTTTAC TTCCAGCAA CTG TTGCAGGAA TATATTTCTTTAAAT CLK_3557 440135 - 441067 + | electron transport complex, RnfABCDGE type, D subunit CLK_3558 441067 - 441738 + | electron transport complex, RnfABCDGE type, G subunit CLK_3559 441749 - 442351 + | electron transport complex, RnfABCDGE type, E subunit TERM 661 442701 - 442683 - g 75 -6 -4.73388 | AATGGTTATTAAAAA GAAAAGTC CAG GACTTTAC AAAGCTCTAGGAATA CLK_3560 442405 - 442983 + | electron transport complex, RnfABCDGE type, A subunit CLK_3561 442997 - 443830 + | electron transport complex, RnfABCDGE type, B subunit TERM 662 443920 - 443893 - f 83 -7.2 -5.05601 | opp_overlap 443895, overlap 443895 GAGTATATACAAAAA GAGTTAAGTAAA ATTT TTTACTTAACTT TTTTTGTACTCCATT TERM 663 443895 - 443918 + F 100 -9.8 -5.67063 | opp_overlap 443895 443893 GTATATACAAAAAGA GTTAAGTAAA ATTT TTTACTTAAC TTTTTTTGTACTCCA TERM 664 443918 - 443895 - f 93 -9.8 -4.14422 | opp_overlap 443895, overlap 443893 GTATATACAAAAAGA GTTAAGTAAA ATTT TTTACTTAAC TTTTTTTGTACTCCA TERM 665 444936 - 444956 + G 72 -6.9 -4.11216 | opp_overlap 444935 444939, overlap 444939 AAACAGATTTCAAAC TAATCTAGC AGT GCTAGAATA TTTTAAAGGTAAAGG TERM 666 444939 - 444953 + G 71 -8.6 -2.79004 | opp_overlap 444935 444939, overlap 444936 CAGATTTCAAACTAA TCTAGC AGT GCTAGA ATATTTTAAAGGTAA TERM 667 444953 - 444939 - g 76 -8.6 -3.53745 | opp_overlap 444939 444936, overlap 444935 CAGATTTCAAACTAA TCTAGC AGT GCTAGA ATATTTTAAAGGTAA CLK_3562 444184 - 445272 + | amidase domain-containing protein TERM 668 445296 - 445331 + T 83 -7 -4.98917 | opp_overlap 445301, overlap 445301 AGAGTACAGAGTATA AAGAAGCGTTAAGTAA AATT TTACTTAACGCTTTAG TTTTATTATATTTTG TERM 669 445326 - 445301 - T 100 -13.5 -4.13973 | opp_overlap 445301 445296 ACAGAGTATAAAGAA GCGTTAAGTAA AATT TTACTTAACGC TTTAGTTTTATTATA TERM 670 445301 - 445326 + T 100 -13.5 -4.35361 | opp_overlap 445301, overlap 445296 ACAGAGTATAAAGAA GCGTTAAGTAA AATT TTACTTAACGC TTTAGTTTTATTATA CLK_3563 445907 - 445383 - | heptaprenyl diphosphate synthase component I CLK_3564 446317 - 445925 - | hypothetical protein TERM 671 446412 - 446375 - R 71 -8.2 -3.00239 | opp_overlap 446370 446375, overlap 446370 446374 ATTTAAAGATTAAAT TTTTTACATTTTAATA TATTCT TATTAAAATATAAAAA TAAATTATTTAAAAA CLK_3565 447464 - 446430 - | apbE family protein TERM 672 446660 - 446671 + g 70 -5.8 -4.35116 | TAAGACCTTTCTCTG CAGG ATAG CCTG TTTTAGTATCAAATA TERM 673 447530 - 447502 - H 78 -8.5 -3.94877 | opp_overlap 447499 AGTCTTCAACAATAA TTTATAATCAATT TTA AATTAATTATAAA TAAGAGTTCTAATAA TERM 674 447957 - 447946 - H 73 -4.4 -5.13521 | overlap 447935 AAATGACTTAAAAAA TCCT GTTT AGGA AAAGATAGCACATTC TERM 675 449100 - 449074 - g 76 -6.6 -4.40184 | TTAATGAAATAGAAA CTGCTGTTAACC CAG AATTATCAGCAG CAGAAAAAGCTGTTA TERM 676 449194 - 449169 - g 88 -9.1 -4.08394 | ATAGCGGCTGCAAAA GCTTTAAAAGC AGAT GCTGTTAAAGC TGTAGATAACGTTAA TERM 677 449243 - 449226 - g 73 -3.5 -5.28481 | gap 1, overlap 449227 449229 449230 GATGCAACTAAAAAA TC-AGCTT TCG AAGCTAGA ATAGCTGCTAAAGAC TERM 678 449731 - 449712 - g 70 -5 -4.54753 | overlap 449713 AAAGATGAAAAAGAA GCAGCTAA AGCG TTAGCTGA GAAGTTTGAGTTAAA TERM 679 449730 - 449713 - g 72 -8.5 -3.30412 | overlap 449712 AAGATGAAAAAGAAG CAGCTAA AGCG TTAGCTG AGAAGTTTGAGTTAA TERM 680 449865 - 449846 - g 84 -9.4 -3.73414 | opp_overlap 449850, overlap 449850 TATAGCATATGTAAA CAAAGTAG AATT CTACTTTG GTTCAGCTCTTGATT CLK_3566 448074 - 452273 + | putative cell surface protein TERM 681 452365 - 452338 - f 70 -7 -3.73212 | opp_overlap 452334 452343 AAATTAAAAAATATA GGGAAGGGTAGA GTAT TCTATCCTTCTC ACATTTAAGATATAT TERM 682 452486 - 452517 + F 100 -17.6 -5.67529 | opp_overlap 452486, overlap 452472 ATAGTCATATCATAA GGCTATTGAATAGA TTAT TCTATTCAATAGCC TTTTTATTTTTGGTT TERM 683 452517 - 452486 - f 100 -17.6 -3.47841 | opp_overlap 452472 452486 ATAGTCATATCATAA GGCTATTGAATAGA TTAT TCTATTCAATAGCC TTTTTATTTTTGGTT TERM 684 452998 - 452988 - g 78 -4 -5.48825 | overlap 452993 GATCAGTTAAAAAAA TTAG ATA CTAA AGAAGTAATAATAGT CLK_3567 452673 - 454742 + | amidase domain-containing protein TERM 685 454750 - 454791 + F 100 -16.3 -4.39287 | opp_overlap 454750 454755, overlap 454755 GAAGATAAATAATAT CAAAAGACTATTAAATGGA ATAA TCCATTTAATAGTCTTTTA TTTTCATGTAATTAA TERM 686 454791 - 454750 - f 100 -18.5 -2.80929 | opp_overlap 454750 454755, overlap 454755 GAAGATAAATAATAT CAAAAGACTATTAAATGGA ATAA TCCATTTAATAGTCTTTTA TTTTCATGTAATTAA TERM 687 454786 - 454755 - f 100 -16.2 -4.52347 | opp_overlap 454750 454755, overlap 454750 TAAATAATATCAAAA GACTATTAAATGGA ATAA TCCATTTAATAGTC TTTTATTTTCATGTA TERM 688 454755 - 454786 + F 100 -16.2 -5.16132 | opp_overlap 454755 454750, overlap 454750 TAAATAATATCAAAA GACTATTAAATGGA ATAA TCCATTTAATAGTC TTTTATTTTCATGTA CLK_3568 454829 - 455065 + | hypothetical protein CLK_3569 455377 - 460281 + | putative cell surface protein TERM 689 460324 - 460343 + T 100 -12.2 -5.33921 | opp_overlap 460324 AATGTAGTAAAAAAA GTGGGAAG TAAA CTTCCCAC TTTTTTGCTTAATTT TERM 690 460343 - 460324 - T 100 -12.2 -5.54894 | opp_overlap 460324 AATGTAGTAAAAAAA GTGGGAAG TAAA CTTCCCAC TTTTTTGCTTAATTT CLK_3570 460786 - 460352 - | hypothetical protein TERM 691 461128 - 461162 + H 73 -6.9 -4.25389 | gap 1, opp_overlap 461128 ATAATTGCTGAAAAA TATTTTAATAAAGGTA TAAA TA-CTTTATTAAAATA TTTCTATATTATGAT TERM 692 461162 - 461128 - H 77 -6.9 -4.60255 | gap 1, opp_overlap 461128 ATAATTGCTGAAAAA TATTTTAATAAAGGTA TAAA TA-CTTTATTAAAATA TTTCTATATTATGAT CLK_3571 461328 - 464762 + | putative cell wall-binding protease TERM 693 464814 - 464845 + T 82 -8.2 -4.53607 | gap 1, opp_overlap 464816 464817, overlap 464816 464816 CTAAGGGGAATACTA AAT-GGCAGATACAA AAA TTGTATCTGCCCATG TTTTATAATAATTTT TERM 694 464842 - 464816 - T 100 -12.4 -3.9344 | opp_overlap 464814 464816 464816, overlap 464817 AAGGGGAATACTAAA TGGCAGATACAA AAA TTGTATCTGCCC ATGTTTTATAATAAT TERM 695 464816 - 464842 + T 89 -12.4 -2.9043 | opp_overlap 464816 464817, overlap 464814 464816 AAGGGGAATACTAAA TGGCAGATACAA AAA TTGTATCTGCCC ATGTTTTATAATAAT TERM 696 464816 - 464843 + T 95 -10.8 -3.85857 | gap 1, opp_overlap 464816 464817, overlap 464816 464814 AAGGGGAATACTAAA T-GGCAGATACAA AAA TTGTATCTGCCCA TGTTTTATAATAATT TERM 697 464841 - 464817 - T 100 -15.9 -2.95341 | opp_overlap 464816 464816 464814, overlap 464816 AGGGGAATACTAAAT GGCAGATACAA AAA TTGTATCTGCC CATGTTTTATAATAA CLK_3572 465837 - 464848 - | acyltransferase family protein TERM 698 465582 - 465570 - G 70 -3.5 -5.0916 | CTTCTAATAGAAAAA TATAT ACA ATATA CCATGCAAAGTAGTC TERM 699 465592 - 465606 + g 82 -4.3 -5.60864 | opp_overlap 465592 AATATACCATGCAAA GTAGT CTGGA ACTAC TTTTTTTAGTCTATG CLK_3573 466298 - 467809 + | hypothetical protein TERM 700 467844 - 467884 + F 90 -7.1 -5.40625 | opp_overlap 467844 AAATAAAATAATATA GATATAGGATTTATAGTTT ATA AGACTATTTATTCTATATC TTTTTTATCTAATAT TERM 701 467965 - 467977 + F 70 -3.4 -5.28983 | ACTCTTTTTATTCAT CCTA TAAGC TAGG TTTTTATATTTTAAA CLK_3574 468205 - 469116 + | phosphate ABC transporter phosphate-binding protein TERM 702 469344 - 469361 + G 75 -4.3 -5.24449 | TTTTGGGATAAAGTT TTTTATT ACAT AATAAAA TTTTTTACATTTCTA TERM 703 469927 - 469917 - g 76 -5.4 -5.08824 | CCTGCATCTAAAAAA GCTA TAT TAGC CTCTGTAATTTTAGC CLK_3575 469320 - 470183 + | phosphate ABC transporter permease TERM 704 470256 - 470272 + G 72 -5.1 -4.81734 | TTTTATTATTACTTT GGTACTT TTT AAGCACC TTTTTAGTAGTATTT TERM 705 470736 - 470754 + G 81 -4.6 -5.44721 | CCTCTTATTCTTTAG GTATAGAT AAG ACCTATAC TTTTTTTAAAATAAT CLK_3576 470219 - 471049 + | phosphate ABC transporter permease CLK_3577 471051 - 471797 + | phosphate ABC transporter ATP-binding protein CLK_3578 471918 - 472388 + | hypothetical protein TERM 706 472468 - 472421 - f 77 -9 -3.30821 | gap 2, opp_overlap 472421 472426, overlap 472416 472426 AATAATATAACTCAA TAAAAGCTATGAAATTAATAGG AGAAAA CCTA--AATTTCATAGCTTTTA TTTATTTAAAATTAA TERM 707 472421 - 472468 + F 86 -9 -4.46233 | gap 2, opp_overlap 472421 472416 472426, overlap 472426 AATAATATAACTCAA TAAAAGCTATGAAATTAATAGG AGAAAA CCTA--AATTTCATAGCTTTTA TTTATTTAAAATTAA TERM 708 472426 - 472463 + F 73 -4.5 -5.18866 | gap 2, opp_overlap 472426 472421 472416, overlap 472421 TATAACTCAATAAAA GCTATGAAATTAATAGG AGAAAA CCTA--AATTTCATAGC TTTTATTTATTTAAA TERM 709 473240 - 473253 + G 76 -3.9 -5.38549 | TTCCCTTCAGTATTA GAAAA TTTA TTTTC TTTTTCTTATTTAAA TERM 710 473793 - 473814 + G 78 -3.1 -5.64274 | TAGCTGGTATAGGTG GAATTTTAA CCAG TTGGAATTC TTTTTTTATGGGTGG CLK_3579 472874 - 474325 + | amino acid permease family protein TERM 711 474398 - 474358 - T 100 -15.7 -5.63012 | opp_overlap 474363 474368 474397, overlap 474363 AAAAACAAATAAAAA CGTAATAAAAGGAAAGTGC TAT GCACTTTCCTTTTATTGTG GAATTATTCTATTGA TERM 712 474393 - 474363 - T 100 -18.6 -3.54768 | opp_overlap 474363 474368, overlap 474358 CAAATAAAAACGTAA TAAAAGGAAAGTGC TAT GCACTTTCCTTTTA TTGTGGAATTATTCT TERM 713 474363 - 474393 + T 100 -18.6 -3.4015 | opp_overlap 474363 474358, overlap 474368 CAAATAAAAACGTAA TAAAAGGAAAGTGC TAT GCACTTTCCTTTTA TTGTGGAATTATTCT TERM 714 474368 - 474388 + T 100 -14.1 -4.78839 | opp_overlap 474363 474358, overlap 474363 AAAAACGTAATAAAA GGAAAGTGC TAT GCACTTTCC TTTTATTGTGGAATT TERM 715 474399 - 474420 + T 79 -8.9 -3.76952 | overlap 474397 474402 TTTCCTTTTATTGTG GAATTATTC TATT GAATAATTC TTTAAATTCAGTACC CLK_3580 474945 - 474391 - | putative lipoprotein TERM 716 474766 - 474784 + g 71 -2.4 -5.35815 | TGCGTTCTCATTTGT TGCAGT CCCGTTT GCTGCA TTTTTGTTTGCTGTA CLK_3581 475134 - 475958 + | hypothetical protein TERM 717 475972 - 476002 + F 100 -5.6 -6.23545 | opp_overlap 475963 475972 475971 475988 AACATAGACAAAAAG GTGTCTCAAAAT TAAATCT ATTTTTAGACAC TTTTTTTTATTTAAG CLK_3582 476036 - 476731 + | hypothetical protein CLK_3583 476818 - 477156 + | single-strand nucleic acid-binding domain-containing protein TERM 718 477191 - 477181 - f 70 -2.6 -5.61881 | opp_overlap 477186, overlap 477186 TTTGAAAAATAAAAA TTAA GTT TTAA TAAAAATTTATCCGT CLK_3584 477409 - 477960 + | hypothetical protein TERM 719 478305 - 478275 - g 81 -2.7 -5.79595 | gap 1, opp_overlap 478286, overlap 478276 GTTTAAAAGAAAAAA GCATACTC-ACACT ATAC AGTGTAAAGTATGT CATAAAGAGGTGCAG TERM 720 478304 - 478276 - g 70 -6.2 -4.0613 | gap 1, opp_overlap 478286, overlap 478275 TTTAAAAGAAAAAAG CATACTC-ACACT ATAC AGTGTAAAGTATG TCATAAAGAGGTGCA CLK_3586 478024 - 478458 + | FUR family transcriptional regulator CLK_3585 478802 - 478455 - | hypothetical protein CLK_3587 479072 - 480130 + | HD domain-containing protein TERM 721 480149 - 480186 + F 100 -14.5 -4.10566 | opp_overlap 480152 480158, overlap 480152 TTGTTAATATGAGTA TAAGCACAACATAAAAT TTAG ATTATATGTTGTGCTTA TTTGTATAATAATAT TERM 722 480183 - 480152 - f 95 -11.8 -3.47307 | opp_overlap 480152 480149, overlap 480158 TTAATATGAGTATAA GCACAACATAAAAT TTAG ATTATATGTTGTGC TTATTTGTATAATAA TERM 723 480152 - 480183 + F 100 -11.8 -4.16814 | opp_overlap 480152 480158, overlap 480149 TTAATATGAGTATAA GCACAACATAAAAT TTAG ATTATATGTTGTGC TTATTTGTATAATAA CLK_3588 480267 - 481292 + | putative membrane associated peptidase TERM 724 481345 - 481397 + T 100 -14.4 -4.1891 | gap 1, opp_overlap 481345 481346 481348, overlap 481346 481349 TACGTCTCTGGATAA C-GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTCTG TTTATATTCAAAAGA TERM 725 481396 - 481345 - T 100 -16.8 -3.28924 | opp_overlap 481345 481346 481349, overlap 481346 481348 TACGTCTCTGGATAA CGATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTCT GTTTATATTCAAAAG TERM 726 481346 - 481395 + T 100 -18.1 -3.6944 | opp_overlap 481346 481345 481348, overlap 481345 481349 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTC TGTTTATATTCAAAA TERM 727 481395 - 481346 - T 100 -20.3 -2.57211 | opp_overlap 481345 481346 481349, overlap 481345 481348 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTC TGTTTATATTCAAAA TERM 728 481393 - 481348 - T 100 -17.1 -2.82623 | opp_overlap 481346 481345 481349, overlap 481346 481345 GTCTCTGGATAACGA TTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAAC TCTGTTTATATTCAA TERM 729 481349 - 481392 + T 100 -18.4 -2.64681 | opp_overlap 481348 481346 481345, overlap 481346 481345 TCTCTGGATAACGAT TTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAA CTCTGTTTATATTCA CLK_3589 483644 - 481590 - | methyl-accepting chemotaxis protein TERM 730 482470 - 482486 + g 74 -8.1 -3.63707 | opp_overlap 482476 GCAGACAATTCTTCA GATATAG ATA CTATATC TTTAAGGCTTATATT CLK_3590 483801 - 483944 + | hypothetical protein TERM 731 483952 - 483936 - T 75 -5.3 -4.94811 | opp_overlap 483936 483938 TTAAAAACAAAGAAA TATTTTT AGG AAAAATA GTTATTAGGAGATAA CLK_3591 486053 - 484323 - | ATP-dependent metalloprotease TERM 732 485998 - 485965 - G 72 -8.3 -3.28712 | opp_overlap 485973, overlap 485973 TTTGTTTTTTTAGAA CTATAGAAGTTAAGA GAAA TCATAACTGCTATAG ATAAAAAGGCAGTTA TERM 733 486021 - 486036 + g 71 -3.4 -5.17786 | overlap 486015 GGCAGTTAATAAAGG TAAAAT AATA ATTTTA TTTTTAATTTTATTC TERM 734 486763 - 486747 - gH 79 -8.1 -3.89182 | overlap 486750 GAAGAAGAAGTTAAA GAAGAAA AAT TTTCTTC AAATAAAAAATATAA CLK_3592 486273 - 487328 + | hypothetical protein rnhA 487303 - 487752 + | ribonuclease HI CLK_3594 487815 - 487991 + | hypothetical protein TERM 735 488028 - 487984 - f 100 -14 -3.40566 | gap 1, opp_overlap 487995, overlap 487995 ATATGAGAGGGATAA TG-AGATAAAAAGATTTGGGG AAAG CCCCAAATCTTTTTATATACA ATAAATACAAAAATG TERM 736 488016 - 487995 - f 100 -13.1 -5.05079 | opp_overlap 487995, overlap 487984 ATAATGAGATAAAAA GATTTGGGG AAAG CCCCAAATC TTTTTATATACAATA TERM 737 487995 - 488016 + F 100 -13.1 -4.9792 | opp_overlap 487995 487984 ATAATGAGATAAAAA GATTTGGGG AAAG CCCCAAATC TTTTTATATACAATA CLK_3595 488172 - 489476 + | TPR repeat-containing DNA binding protein CLK_3596 489508 - 490761 + | TPR repeat-containing protein CLK_3597 491112 - 491264 + | hypothetical protein CLK_3598 491279 - 491884 + | DJ-1/PfpI family protein CLK_3599 492155 - 493018 + | hypothetical protein TERM 738 493033 - 493060 + F 88 -8.6 -4.80453 | AAATTTAATGTTATA TAAGCGTCGATA AAAA TATTGATGCTTA TTTATTTTGTGATAA TERM 739 494757 - 494741 - g 81 -3.8 -5.54338 | overlap 494735 494743 CAATGAAAAGAAAAA TATTTC AATTA GAAATA GAAAAGGAAGCATTG clpB 493474 - 496074 + | clpB protein TERM 740 496549 - 496573 + T 72 -8.9 -2.6462 | opp_overlap 496556, overlap 496548 496551 496556 TTTTAAAGGCATCTA TATAAAATTAA TAT TTAATTTTATA ATCTTTAAATCAATA TERM 741 496805 - 496837 + T 72 -8.4 -3.20878 | ATAGGACGTTTACTT AGCTCTGTTGCCAC AGGAC GTGGCATTAGAGCG TTAGCTTAAATATTA CLK_3601 497688 - 496960 - | CobB/CobQ family glutamine amidotransferase TERM 742 497268 - 497278 + g 82 -4 -5.5353 | CTACATAGGTTTCAT TGAA TTC TTCA TTTTTTATTACTGTA CLK_3602 499107 - 497746 - | UDP-N-acetylmuramyl tripeptide synthetase-like protein TERM 743 498958 - 498942 - G 78 -9.5 -3.28924 | opp_overlap 498931 498936 498935 498933 498942 TAGTTCCTGTTACAA GGATTAC TTT GTAATCC TTAGCTACTGTTTTT TERM 744 498942 - 498958 + g 76 -9.5 -3.16564 | opp_overlap 498942, overlap 498931 498936 498935 498933 TAGTTCCTGTTACAA GGATTAC TTT GTAATCC TTAGCTACTGTTTTT TERM 745 500041 - 500015 - g 72 -8.9 -2.98088 | overlap 500019 GTGTAAATTTAGATA TTAAGCCTAAT AAAAA ATCAGGCTTAA AAGTGCAATTGAAAA TERM 746 500060 - 500076 + G 87 -8.1 -4.83169 | opp_overlap 500045 500044 500060 500059 TGCAATTGAAAAATT GCAATAA AAC TTATTGC TTTTTGTCAGAGGCT manA 499372 - 500352 + | mannose-6-phosphate isomerase, class I TERM 747 500572 - 500608 + F 100 -14.9 -3.52896 | opp_overlap 500570 500581 500598, overlap 500572 TCTTTTTTAAGGAGG TATTCACAATATTTTTT ATT GAAAAATATTGTGAATA TTATATAAATAATAA CLK_3604 500700 - 501815 + | putative lipoprotein TERM 748 501813 - 501827 + F 70 -4.4 -4.91357 | opp_overlap 501813 GTGAATTATAAAAAG TAATAA AGA TTATTA TTTTGTTATATGTTT CLK_3605 501923 - 502777 + | putative undecaprenol kinase TERM 749 502798 - 502838 + T 100 -17.3 -5.02502 | opp_overlap 502802 TAAAGAGCGTTGTTA TATAGGACTATTAGCAA TGTAAAT TTGCTAATAGTCCTATA TTTTTATATAATATC TERM 750 502834 - 502802 - T 100 -13.7 -2.87344 | opp_overlap 502798 GAGCGTTGTTATATA GGACTATTAGCAA TGTAAAT TTGCTAATAGTCC TATATTTTTATATAA TERM 751 504676 - 504657 - T 75 -9.2 -2.65808 | opp_overlap 504660 504663, overlap 504654 504669 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 752 504724 - 504702 - T 72 -7.9 -3.50853 | overlap 504711 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 753 504803 - 504783 - T 95 -9.9 -4.36586 | opp_overlap 504781 504783, overlap 504774 504780 ACATAATTAAAATAA GTTAAGATA AAT TATCTTAAC TATTAGTTATGGAAT TERM 754 504783 - 504803 + T 85 -9.9 -3.29593 | opp_overlap 504774 504783 504780, overlap 504781 ACATAATTAAAATAA GTTAAGATA AAT TATCTTAAC TATTAGTTATGGAAT TERM 755 504874 - 504858 - T 72 -8.7 -2.62616 | overlap 504873 TCAGTTGGGAGAGCA CCTGCCT TGC AAGCAGG GGGTCAGGAGTTCGA TERM 756 505208 - 505193 - T 72 -9 -2.69489 | opp_overlap 505191 505193 505203, overlap 505190 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 757 505193 - 505208 + T 75 -9 -3.23572 | opp_overlap 505193 505190, overlap 505191 505203 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 758 505352 - 505335 - T 76 -8.5 -3.695 | GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGCGGATAGATC TERM 759 505518 - 505503 - T 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 760 505592 - 505581 - T 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 761 508054 - 508033 - T 82 -9.5 -3.36823 | gap 1, opp_overlap 508029, overlap 508028 508037 CTTTTTAAAAGGTAA CTCACTCAGC AAG GCTGAG-GAG TACTGATTTAAAACG TERM 762 508051 - 508037 - T 79 -10 -2.6027 | opp_overlap 508029, overlap 508033 508028 TTAAAAGGTAACTCA CTCAGC AAG GCTGAG GAGTACTGATTTAAA TERM 763 508375 - 508348 - T 87 -7 -5.09762 | opp_overlap 508348 ACGTTAATATAAAAA GGATGTTGGAAT AAAT ATACCAGCATCC TTATTTGCATACACA TERM 764 508348 - 508375 + T 86 -9.2 -3.96216 | opp_overlap 508348 ACGTTAATATAAAAA GGATGTTGGAAT AAAT ATACCAGCATCC TTATTTGCATACACA CLK_3617 509619 - 508756 - | metallo-beta-lactamase family protein CLK_3618 509756 - 510478 + | putative 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 765 510527 - 510475 - f 83 -7.9 -4.62803 | opp_overlap 510479, overlap 510479 510482 GGAAAGAACAAGAAA TTAAGAGGAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTCTTCTTTT TATATTATTAAGTAA TERM 766 510523 - 510479 - f 100 -13.1 -3.76969 | opp_overlap 510479, overlap 510475 510482 AGAACAAGAAATTAA GAGGAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTCTTC TTTTTATATTATTAA TERM 767 510479 - 510523 + F 100 -17.5 -5.2015 | opp_overlap 510479 510475 510482 AGAACAAGAAATTAA GAGGAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTCTTC TTTTTATATTATTAA TERM 768 510520 - 510482 - f 91 -13.4 -2.65056 | opp_overlap 510479, overlap 510479 510475 ACAAGAAATTAAGAG GAGAGTGTCTCAAAATAA ATT TAATTTTGAGACATTCTC TTCTTTTTATATTAT CLK_3619 511224 - 512585 + | HMGL-related enzyme CLK_3620 512728 - 514650 + | aconitase/isopropylmalate dehydratase family protein CLK_3621 514888 - 515886 + | isocitrate/isopropylmalate family dehydrogenase TERM 769 515972 - 515917 - f 90 -9.8 -3.66727 | opp_overlap 515921 515969, overlap 515922 CAATTAGATATATAA GCAGATCTCTAAGCTTTAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGGAATGGGT AGCTCTACTCTTTAC TERM 770 515966 - 515922 - f 100 -18.2 -3.01309 | gap 1, opp_overlap 515921, overlap 515917 AGATATATAAGCAGA TCTCTAAGCTTTAGAGGGAGT TTTT ACTCCCACTAAAGCTTAG-GA ATGGGTAGCTCTACT TERM 771 515987 - 516010 + F 74 -9 -3.02144 | TAGCTCTACTCTTTA CTCCAATTTT GAAG AAGATTGGAG TATTAGAGCGGATAG TERM 772 516101 - 516068 - f 85 -9.9 -3.16981 | opp_overlap 516068, overlap 516089 TATAATTACATTCAA GTTTTTCTTATGATT TTAA AATTATAAGAAAAAC TTTTTTTATAAAAAT TERM 773 516068 - 516101 + F 100 -12.1 -5.61596 | opp_overlap 516068 516089 TATAATTACATTCAA GTTTTTCTTATGATT TTAA AATTATAAGAAAAAC TTTTTTTATAAAAAT CLK_3622 516236 - 517021 + | polar amino acid ABC transporter ATP-binding protein TERM 774 517424 - 517446 + F 90 -6.3 -5.95286 | CAAGTACGTCTATAT GCCTTGAGT GTAGA GCTTAAGGC TTTTTTGTTTTTGAT CLK_3623 517540 - 519306 + | Na+/H+ antiporter family protein TERM 775 519335 - 519309 - T 100 -16.8 -4.43501 | opp_overlap 519309 519312 519317 AATGGATGCATAAAA TAAGGAAAGTGC TTA GCACTTTCCTTA TTGTTCTTCTCTAGG TERM 776 519309 - 519335 + T 100 -16.8 -4.06864 | opp_overlap 519309, overlap 519312 519317 AATGGATGCATAAAA TAAGGAAAGTGC TTA GCACTTTCCTTA TTGTTCTTCTCTAGG TERM 777 519312 - 519332 + T 100 -14.1 -4.14147 | opp_overlap 519309, overlap 519309 519317 GGATGCATAAAATAA GGAAAGTGC TTA GCACTTTCC TTATTGTTCTTCTCT TERM 778 519317 - 519327 + T 71 -6.8 -4.15849 | opp_overlap 519309, overlap 519312 519309 CATAAAATAAGGAAA GTGC TTA GCAC TTTCCTTATTGTTCT CLK_3624 519548 - 519333 - | hypothetical protein panD 520019 - 519636 - | aspartate 1-decarboxylase TERM 779 520170 - 520151 - R 71 -6.4 -4.16279 | overlap 520166 CACATCATTTTAAAA GAGGGAGT AAAA ACTGCCTC CGAAGCTTAAAAATT panC 521072 - 520227 - | pantoate--beta-alanine ligase TERM 780 520377 - 520398 + g 82 -5.3 -5.38321 | overlap 520389 CGCTAGAGGTTCTTT CATTATAGT GTTT ATTATAATG TTTTTTATAATATTT TERM 781 520492 - 520509 + g 77 -7.1 -4.24711 | GCAGATTTTCTTTCC TGCTTAT TTAA ATAAGCA TTTCTTGAACTTTTA panB 522102 - 521275 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 782 522040 - 522050 + g 72 -4 -5.1361 | ATAATCATAGGCAGT TAAC ATA GTTA TTTTTTCACCTTTGT TERM 783 522174 - 522191 + H 70 -4.9 -4.83169 | opp_overlap 522174 GGATGGATAGAATAC CAATTTG CATC CGAATTG TTTTTATAAAAAGAT TERM 784 522249 - 522224 - H 75 -9.3 -2.59981 | opp_overlap 522226, overlap 522223 522226 GACAATTAGATGAAG TACTTTAAATA AGGA TATTTAAAGTA TATAGATATAAAAAT TERM 785 526185 - 526158 - g 76 -8.7 -3.44257 | opp_overlap 526157 526163 526175, overlap 526163 AAAAGATATGGATAA TATAATATCTG GCATAT CAGATATTATA CCTGTTATGGTTAAA addB 523045 - 526488 + | ATP-dependent nuclease subunit B TERM 786 526545 - 526513 - T 100 -15.3 -4.58466 | opp_overlap 526513 526517, overlap 526517 526531 TTTATAATTACAAAA TAAAGAGTTTATTAA CAA TTAATAAACTCTTTA TTAAATTTGTAGAAA TERM 787 526513 - 526545 + T 100 -15.3 -3.32997 | opp_overlap 526513 526517 526531, overlap 526517 TTTATAATTACAAAA TAAAGAGTTTATTAA CAA TTAATAAACTCTTTA TTAAATTTGTAGAAA TERM 788 526541 - 526517 - T 100 -11.7 -4.82863 | opp_overlap 526513 526517, overlap 526513 526531 TAATTACAAAATAAA GAGTTTATTAA CAA TTAATAAACTC TTTATTAAATTTGTA TERM 789 526517 - 526541 + T 100 -11.7 -4.30933 | opp_overlap 526517 526513 526531, overlap 526513 TAATTACAAAATAAA GAGTTTATTAA CAA TTAATAAACTC TTTATTAAATTTGTA CLK_3629 527019 - 526627 - | hypothetical protein CLK_3630 527327 - 527977 + | TPR repeat-containing protein TERM 790 528412 - 528389 - g 85 -11 -3.16881 | TATGGAGCGGATTAA CACCAGCACA AATA TGGGCTGGTG GAGGAAAGGTAGAAA CLK_3631 527980 - 528666 + | hypothetical protein TERM 791 528835 - 528819 - f 72 -8.1 -3.20633 | overlap 528812 TGACAACAGAGCTAA GTAAACA TCC TGTTTAC CTTACACTTAAATAT CLK_3632 528979 - 529110 + | hypothetical protein TERM 792 529331 - 529296 - T 70 -3.4 -5.39681 | gap 1 ATAAGCAAAGAAAAA GCCTTGGAAACATTGAT AAT ACCAA-GTTCCTAAGAC TATATGTCCTACTCC CLK_3633 530097 - 529420 - | vanZF protein TERM 793 530591 - 530577 - R 82 -4.2 -5.63504 | AATGCCAGAAAAAAA GCACCC TCA AGATGC CGATACCCTAAATCT TERM 794 530731 - 530756 + r 82 -9.1 -4.03413 | TTTAAGCTAAGTTTT GTATTTCTGCA TAAA TGCAGGGATAC TTTCTATAAAAAAAT CLK_3634 531330 - 530722 - | TetR family transcriptional regulator hypB 531575 - 532246 + | hydrogenase accessory protein HypB TERM 795 532722 - 532701 - g 70 -3.7 -5.02606 | overlap 532703 GAGGAAACAACAAAA CTCTTGCTA GAAT TAGCAAAGG CAGGCAGATTACCCG CLK_3636 532605 - 532784 + | putative pyridine nucleotide-disulphide oxidoreductase CLK_3637 532855 - 533841 + | hypothetical protein TERM 796 533857 - 533895 + F 95 -12.8 -3.63073 | opp_overlap 533867, overlap 533867 533891 AATAAAATCTATTTA CAGTAAAAAATGTAGGTT AAG AACCTACATTTTTTATTC TTATTGAGGAATATA TERM 797 533867 - 533885 + F 100 -10.4 -5.70522 | opp_overlap 533867, overlap 533857 ATTTACAGTAAAAAA TGTAGGTT AAG AACCTACA TTTTTTATTCTTATT TERM 798 533885 - 533867 - f 100 -10.4 -5.22312 | opp_overlap 533857 533867 ATTTACAGTAAAAAA TGTAGGTT AAG AACCTACA TTTTTTATTCTTATT TERM 799 537828 - 537854 + G 71 -7.4 -3.86346 | opp_overlap 537814, overlap 537816 ATAGAGAAATGCCTT TTTCTATTGAAG TAC CTGCAGTAGAAA TTTATAGGGAACTAG addA 534278 - 538117 + | recombination helicase AddA TERM 800 539202 - 539188 - g 74 -2.2 -5.50925 | overlap 539192 AATTAATAGAAAAAA TTACTT ATC AAATAA CCAATATAACAGAAG CLK_3639 538257 - 539948 + | methyl-accepting chemotaxis protein pepT 540025 - 541251 + | peptidase T TERM 801 541493 - 541467 - T 71 -6.8 -4.05033 | opp_overlap 541468 541475, overlap 541468 TTTATTTTATATAAA TTTAGATATAAT CTA ATTATATCTAAG CAGTACCTTCTTTTT TERM 802 541492 - 541468 - T 85 -10.3 -3.02698 | opp_overlap 541468 541475, overlap 541467 TTATTTTATATAAAT TTAGATATAAT CTA ATTATATCTAA GCAGTACCTTCTTTT CLK_3641 542421 - 541489 - | phospholipase family protein TERM 803 541625 - 541647 + g 100 -12.2 -3.01309 | opp_overlap 541629, overlap 541629 541641 TCAAAGTCTGTAGAG CTAATTCCTA AGG TAGGAATTAG TATAGTTCTATCTAT TERM 804 542627 - 542656 + H 75 -8.7 -3.19051 | overlap 542625 542630 TTTTATACTATGTTT TAATTTTCCTCCA TCTT TGGTGGGAAATTA TATATGTATTTGTTA CLK_3642 542990 - 543706 + | metallo-beta-lactamase family protein CLK_3643 543827 - 544285 + | glyoxalase CLK_3644 544407 - 544640 + | hypothetical protein CLK_3645 544828 - 545517 + | hypothetical protein CLK_3646 545536 - 545733 + | hypothetical protein TERM 805 545813 - 545803 - f 72 -4 -5.37865 | opp_overlap 545803 TTAATAATCAAAAAA TACA TAT TGTA ATTAATATATTTAAA TERM 806 545911 - 545924 + G 74 -2.4 -5.52986 | CTTCTGCTGTAGTTG CATC TTGTGT GATG TTTTTTTCGTCAAAT CLK_3647 545871 - 547286 + | N-acetylmuramoyl-L-alanine amidase-like protein TERM 807 547452 - 547468 + T 72 -8.1 -3.1544 | ATATTTAAGCGTGAA GTAAACA GGA TGTTTAC TTAGATCTGCTCTGC CLK_3648 548255 - 547620 - | His/Glu/Gln/Arg/opine ABC transporter permease CLK_3649 549071 - 548268 - | polar amino acid ABC transporter amino acid-binding protein TERM 808 548980 - 548990 + g 72 -5.4 -4.70353 | TTTATATCCTTAAGG GAAG TAT CTTC TTTTGATTTGTTATC TERM 809 549156 - 549132 - H 83 -9.5 -3.61764 | opp_overlap 549131 549150, overlap 549150 TGATGAATTTGTAAA GTGATAAAATT AAA AATCTTATCAC ATAATTTAAAATTAT TERM 810 549321 - 549309 - g 79 -7.7 -4.33576 | GAAGAAATATACAAA GCCAT ATT ATGGC CCAAATAATTATTTT CLK_3650 549292 - 550020 + | hypothetical protein TERM 811 550165 - 550143 - T 76 -9.2 -2.82449 | opp_overlap 550141 550139 550138 550134, overlap 550142 GCTTATTAACAGAAT TCTTAGGAGT TTT ACTCCTTAGA GGTCGTTATCCTTTA TERM 812 550294 - 550333 + T 100 -7.6 -5.38054 | gap 1, opp_overlap 550294 GGTGAATATAAAAAA GTATAAGATAAAAT-TTTA TTA TAAAGATTATATCTTATAC TTTTTATTTATAAAA TERM 813 550333 - 550294 - T 100 -7.6 -5.47159 | gap 1, opp_overlap 550294 GGTGAATATAAAAAA GTATAAGATAAAAT-TTTA TTA TAAAGATTATATCTTATAC TTTTTATTTATAAAA CLK_3651 551579 - 550368 - | EAL domain-containing protein TERM 814 550800 - 550824 + g 88 -4.4 -5.75342 | TTCACCAATTAAAGT TATAGCCTTT TTTAC AGAGGTTATA TTTTTTTTAAGAGAA thiE 552461 - 551844 - | thiamine-phosphate pyrophosphorylase TERM 815 551988 - 552002 + g 75 -4.3 -5.3104 | TATGGCTACAGAAGG GATAG ATATG CTATC TTTTATTTTTGATAG thiM 553243 - 552452 - | hydroxyethylthiazole kinase TERM 816 553414 - 553453 + r 72 -9 -2.62184 | overlap 553419 ATGATTGTCCATACT TTTAAGTTTAATTTATAG ATTC TTATTAATTAAACTTAAA TAGTATCACAGAAGG thiD 554274 - 553474 - | phosphomethylpyrimidine kinase TERM 817 554553 - 554531 - H 100 -7.1 -6.11229 | opp_overlap 554531 ATTAAAACAAAAAAA GATGTACTG AAAAG CAATACATC TTTTTAATAAATTTT TERM 818 554531 - 554553 + H 70 -4.9 -4.79667 | opp_overlap 554531 ATTAAAACAAAAAAA GATGTACTG AAAAG CAATACATC TTTTTAATAAATTTT CLK_3655 554926 - 555060 + | hypothetical protein TERM 819 555567 - 555557 - g 74 -3.2 -5.38951 | AAGCTATAGAAAAAA TAGG GTA CCCA GTGTTTGTAAAACCT ddlB 555172 - 556074 + | D-alanine--D-alanine ligase TERM 820 556139 - 556084 - f 100 -9.6 -4.94168 | opp_overlap 556097, overlap 556097 AGATAATAAAATAAA TTAGAATAAAAAATACTTATAGAT TGTGAGTG ATCTATAAGTATTTTTTATTTGAA TGAAGTTTTTTTCCA TERM 821 556126 - 556097 - f 88 -6.7 -5.59534 | opp_overlap 556097, overlap 556084 AATTAGAATAAAAAA TACTTATAGAT TGTGAGTG ATCTATAAGTA TTTTTTATTTGAATG TERM 822 556097 - 556126 + F 100 -8.1 -5.65927 | opp_overlap 556097 556084 AATTAGAATAAAAAA TACTTATAGATTG TGAG TGATCTATAAGTA TTTTTTATTTGAATG TERM 823 557250 - 557236 - g 76 -3.6 -5.43414 | ATGATAGAGAAAAAA TCAATG AGG CATTAA AAAATATGGGAACTT TERM 824 557333 - 557318 - g 74 -6.2 -4.45083 | opp_overlap 557317 TGGAGATGCAGAAAA GAATCT AATA AGATTC ATAGTTAAAGATGGA CLK_3657 556230 - 557372 + | putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein CLK_3658 557376 - 558248 + | high-affinity branched-chain amino acid ABC transporter, permease protein CLK_3659 558249 - 559193 + | putative high-affinity branched-chain amino acid ABC transporter, permease protein CLK_3660 559205 - 559942 + | putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein CLK_3661 559944 - 560645 + | putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein CLK_3662 560674 - 561450 + | hypothetical protein TERM 825 561552 - 561599 + F 88 -8.1 -4.91194 | opp_overlap 561555, overlap 561555 GAATTGGCATAATAT AAAGCACTATGTAGATTATTT TAGAGT GAATAATTTATATAGTGCTTA TTTTATATTTATTGT TERM 826 561555 - 561596 + F 100 -9.8 -4.50487 | opp_overlap 561555, overlap 561552 TTGGCATAATATAAA GCACTATGTAGATTATTT TAGAGT GAATAATTTATATAGTGC TTATTTTATATTTAT CLK_3663 561868 - 562626 + | hypothetical protein CLK_3664 562620 - 563063 + | hypothetical protein TERM 827 564045 - 564035 - g 76 -2.6 -5.54403 | AAAAAAGAATAAAAA TATA CAA TATA CTAAAAGATAATAAC TERM 828 564519 - 564501 - g 73 -6 -4.57837 | AGAGTGTTGCAAAAA TGGAGTGA TTT TTACTCCA GGGGATATATTCTAT CLK_3665 563206 - 564657 + | GntR family transcriptional regulator CLK_3666 564718 - 565287 + | hypothetical protein CLK_3667 565348 - 566133 + | putative lipoprotein TERM 829 566161 - 566193 + F 77 -6.6 -4.55625 | gap 1, opp_overlap 566164, overlap 566165 TGATTGATAGTTTAA TTAG-GAGTTTTTGT TTTC ACAAAAACTCTTTAA TTTTATAATATTAAT TERM 830 566165 - 566188 + F 100 -11.2 -4.28487 | opp_overlap 566164, overlap 566161 TGATAGTTTAATTAG GAGTTTTTGT TTTC ACAAAAACTC TTTAATTTTATAATA CLK_3668 566652 - 567512 + | hypothetical protein TERM 831 567549 - 567592 + F 100 -12 -4.69048 | opp_overlap 567548 567545 CTTTTAATTAAGATG GTGTCTCAAAATGATGTCTA AAAA TAGATTTAATTTTGAGACAC TTTCTTTAATTTTAT TERM 832 567597 - 567641 + F 72 -7.6 -3.59079 | gap 1, opp_overlap 567612 567638, overlap 567593 567612 567638 TTTTGAGACACTTTC TTTAATTTTAT-TAAAGCCTT GGAG AGGGCTTTAAATAAAATTACA TTAATTGTATTCTTT TERM 833 568605 - 568581 - g 85 -3.8 -5.80727 | overlap 568596 AAAAAGAAGAAAAAA TTTATAAAAA GCACA CTTTTATAAA AGAAGAAGATGTATT CLK_3669 567788 - 568681 + | NUDIX family hydrolase CLK_3670 568815 - 569297 + | hypothetical protein TERM 834 569787 - 569774 - g 76 -3.8 -5.44638 | opp_overlap 569774, overlap 569784 ATAATAAAAAGAAAA TGGG AATATA CCCA TCATTAATAATAGGA CLK_3671 569473 - 569997 + | hypothetical protein CLK_3672 569999 - 570589 + | methlytransferase,-like protein TERM 835 570626 - 570668 + T 72 -5.1 -5.04868 | opp_overlap 570626 570629 CATGATTAACCAGAA TAAGAGTGTTGAGTA AAAATATAAAAAC TACTCCACACTCTTA TTTTATTTAATTTAA CLK_3673 570914 - 570675 - | hypothetical protein CLK_3674 571396 - 570935 - | hypothetical protein TERM 836 572365 - 572347 - gH 71 -3.1 -5.25699 | AGGATAGAAGAAAAA CCTATTC AGAAA GGATAGG AGATATATTTTCTAA TERM 837 572540 - 572526 - gH 70 -3.5 -5.10497 | opp_overlap 572538, overlap 572538 AAGTTACCTAAAAAA GCCCA ATATA TAGGC CTTGGGCATCTTCAT CLK_3675 571839 - 573068 + | putative nuclease SbcCD, D subunit TERM 838 573444 - 573432 - gf 90 -4.9 -5.77988 | AGATATACAAAAAAA TATAG AGT CTATA ATAGGTTTAACAGCA TERM 839 573593 - 573583 - gf 72 -4 -5.07053 | AAGTATGGCAAAAAA CTTT TAG AAAG AATAAGAAAAGCAAG sbcC 573043 - 576573 + | exonuclease SbcC CLK_3677 576608 - 577156 + | NUDIX family hydrolase CLK_3678 577140 - 577325 + | hypothetical protein TERM 840 577346 - 577404 + F 70 -5 -4.82901 | gap 1 TATTAGCGTGACTGA TATGCTCCCTTTATAGTAGACAGTT GAAATAATAA AACTGT-TAATATGAAGGGGGTATA TTTTTATGGGACGGA TERM 841 577914 - 577871 - f 100 -17.9 -3.96327 | opp_overlap 577865 577879, overlap 577872 AGCTTTCATTATAAA CTATGATACCACAAGTTAT TGAAGG ATAACTTGTGGTATCATAA TCAGATATTAATTTA TERM 842 577913 - 577872 - f 100 -19.2 -2.97475 | opp_overlap 577865 577879, overlap 577871 GCTTTCATTATAAAC TATGATACCACAAGTTAT TGAAGG ATAACTTGTGGTATCATA ATCAGATATTAATTT TERM 843 577879 - 577906 + F 89 -12.2 -2.82834 | opp_overlap 577872 577871, overlap 577865 TTATAAACTATGATA CCACAAGTTATT GAAG GATAACTTGTGG TATCATAATCAGATA CLK_3679 578444 - 578605 + | hypothetical protein TERM 844 578733 - 578709 - f 88 -11.5 -2.80252 | opp_overlap 578709, overlap 578706 578704 578711 ATGTTTATAAGATGA CACCGTTGTTT TTT AGACAACGGTG TTTTTATAGGAAAAT TERM 845 578709 - 578733 + F 100 -13.7 -4.83169 | opp_overlap 578709 578706 578704 578711 ATGTTTATAAGATGA CACCGTTGTTT TTT AGACAACGGTG TTTTTATAGGAAAAT TERM 846 578731 - 578711 - f 71 -8.3 -2.94726 | opp_overlap 578709, overlap 578709 578706 578704 GTTTATAAGATGACA CCGTTGTTT TTT AGACAACGG TGTTTTTATAGGAAA CLK_3680 578754 - 578918 + | ABC transporter CbaT CLK_3681 579220 - 579516 + | hypothetical protein TERM 847 580089 - 580099 + G 83 -6.8 -5.12707 | opp_overlap 580089 GGATTGTTAAGTATA CTCC ACA GGAG TTTTTTCAGATTTGG TERM 848 580813 - 580796 - g 70 -4.1 -4.87592 | overlap 580797 GTAGAGACAATAAAA GCCTTCA ATGC TGAAGGT GAAGTTAATTTAGAA TERM 849 580812 - 580797 - g 71 -7.6 -3.5147 | overlap 580796 TAGAGACAATAAAAG CCTTCA ATGC TGAAGG TGAAGTTAATTTAGA CLK_3682 579722 - 581944 + | ABC transporter CbaT CLK_3683 581944 - 583374 + | putative bacteriocin ABC transporter, bacteriocin-binding protein TERM 850 583445 - 583472 + F 75 -3.8 -5.5074 | gap 1, opp_overlap 583445, overlap 583434 TTGCTTTTATTAAAA TAAAATATATTTA ACA TAAA-ATATTTTA TTTTTTATTCCATTC TERM 851 583615 - 583600 - f 72 -4.8 -5.0917 | opp_overlap 583600 TCATCAAAAAAGAAA TGAAAT AAAA ATTTCA TTGGTATATAATTGG TERM 852 583790 - 583773 - f 78 -4.3 -5.45802 | TTTGTAAAATAAAAA TTTAATT TATG AATTAAA AAAATATAAAAAATA CLK_3684 584161 - 585012 + | hypothetical protein TERM 853 585092 - 585049 - f 100 -16.6 -4.48221 | gap 1, opp_overlap 585049 585052 585055 585074, overlap 585051 585052 TATTAATTGAGAAAA TAGCAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG-TA TTTATATTAAATTAG TERM 854 585049 - 585092 + F 100 -16.6 -4.23794 | gap 1, opp_overlap 585049 585051 585052, overlap 585052 585055 585074 TATTAATTGAGAAAA TAGCAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG-TA TTTATATTAAATTAG TERM 855 585091 - 585051 - f 100 -17.3 -3.84304 | opp_overlap 585049 585052 585055 585074, overlap 585049 585052 TTAATTGAGAAAATA GCAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTGT ATTTATATTAAATTA TERM 856 585052 - 585090 + F 100 -20.8 -3.71114 | opp_overlap 585051 585049 585052, overlap 585049 585055 585074 TAATTGAGAAAATAG CAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG TATTTATATTAAATT TERM 857 585090 - 585052 - f 100 -20.8 -2.89859 | opp_overlap 585052 585049 585055 585074, overlap 585051 585049 TAATTGAGAAAATAG CAAGGGTTTATATTAAAA TTT TTTTAATATAAACCCTTG TATTTATATTAAATT TERM 858 585055 - 585087 + F 100 -16.7 -3.97022 | opp_overlap 585052 585051 585049, overlap 585052 585049 585074 TTGAGAAAATAGCAA GGGTTTATATTAAAA TTT TTTTAATATAAACCC TTGTATTTATATTAA CLK_3685 585478 - 585843 + | putative cadmium resistance transcriptional regulator CadC cadA 585919 - 588147 + | cadmium-translocating P-type ATPase TERM 859 588489 - 588479 - f 72 -4 -5.36689 | overlap 588484 AAATTAAAAACAAAA GAAA ATA TTTC TAAAAAATATTGACT TERM 860 588645 - 588670 + F 100 -7.7 -5.81032 | opp_overlap 588645, overlap 588647 CCAGATTTGAAGAAA TGCTGTAAACA GTAA TGTTTGCAGTA TTTTTTTTAGAATTG TERM 861 588647 - 588668 + F 82 -8.1 -4.53853 | opp_overlap 588645, overlap 588645 AGATTTGAAGAAATG CTGTAAACA GTAA TGTTTGCAG TATTTTTTTTAGAAT CLK_3688 588659 - 588826 + | bacteriophage endolysin TERM 862 589074 - 589096 + F 70 -4.8 -4.89054 | opp_overlap 589074 ATATTAATTTTAAAG GGTACTTCTA TAA TGGGAGCACC TTATTTTTTTATGAA CLK_3689 589342 - 590163 + | SagA protein TERM 863 590200 - 590174 - T 71 -5.3 -4.56729 | opp_overlap 590181, overlap 590181 590184 590185 590187 ATTAAAATACTAAAA TAAAAAAGAAG TAGTT CTTCTTATTTA AACAAGAAGAACCCT TERM 864 590193 - 590181 - T 80 -3.4 -5.83211 | opp_overlap 590181, overlap 590174 590184 590185 590187 TACTAAAATAAAAAA GAAG TAGTT CTTC TTATTTAAACAAGAA TERM 865 590214 - 590184 - T 72 -4.9 -4.94109 | gap 1, opp_overlap 590181 590209, overlap 590181 590174 590185 590187 590203 590209 590212 TAAAATAAAAAAGAA GTAGTTCTTCTTAT TTAA ACAAGAAGAACC-C TAATAAATAGGGTTC TERM 866 590212 - 590187 - T 85 -9.9 -3.2756 | opp_overlap 590181 590209, overlap 590181 590174 590184 590185 590203 590209 AATAAAAAAGAAGTA GTTCTTCTTAT TTAA ACAAGAAGAAC CCTAATAAATAGGGT TERM 867 590235 - 590203 - T 95 -12.2 -3.64703 | opp_overlap 590209, overlap 590187 590184 590185 590209 590212 TTCTTCTTATTTAAA CAAGAAGAACCCTA ATAAA TAGGGTTCTTTTTG CATGGAATTCTCCAT TERM 868 590229 - 590209 - T 93 -9.8 -4.10744 | opp_overlap 590209, overlap 590187 590184 590185 590203 590212 TTATTTAAACAAGAA GAACCCTA ATAAA TAGGGTTC TTTTTGCATGGAATT TERM 869 590209 - 590229 + T 100 -9.8 -4.67011 | opp_overlap 590187 590184 590185 590209 590203 590212 TTATTTAAACAAGAA GAACCCTA ATAAA TAGGGTTC TTTTTGCATGGAATT CLK_3690 590700 - 590497 - | hypothetical protein TERM 870 590732 - 590709 - R 70 -7.5 -3.45817 | opp_overlap 590709, overlap 590708 TGTGCATAATAAAAT GGTAGCAAA ACTGAA TCTGCTACC TATATTTTTTCCAAC CLK_3691 591625 - 590990 - | macrolide export ATP-binding/permease protein MacB TERM 871 591368 - 591378 + g 78 -4 -5.47159 | opp_overlap 591368 GGCAAAGTTTTGAAA TAAG TAG CTTA TTTTTTCTCTTAAGA CLK_3692 593751 - 591628 - | membrane-spanning protein TERM 872 592788 - 592773 - G 78 -6.2 -4.82667 | TTACTATATTAAAAA GCAAAA TTTC TTTTGC TGGATATTTATTTTT TERM 873 592927 - 592913 - G 72 -4.4 -5.01732 | opp_overlap 592913 AAGTCTTTCAAAAAA TATATA TGA TATATA TTAAATTTTTTGAAA CLK_3693 594193 - 593801 - | hypothetical protein TERM 874 594270 - 594245 - H 72 -6.3 -4.39166 | overlap 594247 GCGTATACATTAAAA TCTTATAGAAG CTAA CTTCCATAAAA AAGTATAACATGATA TERM 875 594582 - 594622 + H 100 -13 -4.97461 | opp_overlap 594594 594615 TTAAGAGGTGATGTA TAGTTTTATTAAGCAGTA TAATT TACTACTTAATAAAACTA TTTTTACTATTTATT TERM 876 594696 - 594721 + H 84 -4.8 -5.64421 | TATTTTTATTTAAAA GGATTTCTAT TGATAT ATAGAGGTCC TTTTTTATTTCAAAT TERM 877 595249 - 595235 - g 71 -8.6 -2.8076 | overlap 595232 AAGTAGTATTAATTA CAAAGG ATA CCTTTG AGAGGATAAAGGCGG CLK_3694 594874 - 596250 + | PhoH family protein TERM 878 596399 - 596445 + F 85 -8.2 -4.68705 | opp_overlap 596400 596403 596418, overlap 596401 TTTATACTATATATA AGTAGAGGGTGCCTCAAAAT CAAATAT ATTTTGAGGTGTCCTCTATA TTTTATTACAATTAT TERM 879 596401 - 596443 + F 100 -13 -3.9504 | opp_overlap 596400 596403 596418, overlap 596399 TATACTATATATAAG TAGAGGGTGCCTCAAAAT CAAATAT ATTTTGAGGTGTCCTCTA TATTTTATTACAATT TERM 880 597095 - 597081 - g 70 -4.2 -5.0065 | opp_overlap 597081 597083, overlap 597083 TAGCGAGAAATAAAA GAGCTG TTG CAGCTA TTAATGCAGGTGGCT TERM 881 597093 - 597083 - g 72 -6.8 -4.11748 | opp_overlap 597081 597083, overlap 597081 GCGAGAAATAAAAGA GCTG TTG CAGC TATTAATGCAGGTGG CLK_3695 596636 - 597640 + | hypothetical protein CLK_3696 597650 - 598666 + | hypothetical protein TERM 882 598769 - 598725 - f 95 -10.2 -4.30719 | opp_overlap 598728, overlap 598726 598727 GTTGGGTATAATAAA TTTGAGGTTGTCTCAAAATA AGATA TATTTTGAGACAACCTCTTT TGTATAATTCTATTG TERM 883 598768 - 598726 - f 100 -13.7 -3.1811 | opp_overlap 598728, overlap 598725 598727 TTGGGTATAATAAAT TTGAGGTTGTCTCAAAATA AGATA TATTTTGAGACAACCTCTT TTGTATAATTCTATT TERM 884 598767 - 598727 - f 100 -17.2 -2.50545 | opp_overlap 598728, overlap 598726 598725 TGGGTATAATAAATT TGAGGTTGTCTCAAAATA AGATA TATTTTGAGACAACCTCT TTTGTATAATTCTAT TERM 885 598728 - 598766 + F 100 -20.7 -4.63007 | opp_overlap 598727 598726 598725 GGGTATAATAAATTT GAGGTTGTCTCAAAATA AGATA TATTTTGAGACAACCTC TTTTGTATAATTCTA CLK_3697 598987 - 599160 + | hypothetical protein sagB 599325 - 600281 + | streptolysin associated protein SagB TERM 886 600829 - 600819 - g 89 -4 -5.93809 | GCCCTAGAAAAAAAA TCTA ATA TAGA GGATATAAAAAATCA sagC 600285 - 601367 + | streptolysin associated protein SagC sagD 601383 - 602741 + | streptolysin associated protein SagD CLK_3701 602716 - 603354 + | CAAX amino terminal protease family protein TERM 887 603504 - 603522 + G 70 -8.9 -2.50622 | opp_overlap 603506, overlap 603503 603506 GAGCTATAGGGACAT CACCAAC TAATT GTTGGTG CTTAATGAAATATGT CLK_3702 603362 - 604090 + | hypothetical protein sagG 604383 - 605315 + | ABC transporter, ATP-binding protein SagG sagH 605327 - 606451 + | ABC transporter, ATP-binding/permease protein SagH sagI 606453 - 607595 + | drug ABC tranporter, ATP-binding/permease protein TERM 888 607634 - 607661 + F 93 -10 -4.10429 | AACAGAGTTATTGGA TTTAGAGTGAGT TTTT ACTCCCTCTAAA TTTTAGAAAATGATT CLK_3706 607970 - 608620 + | putative metalloprotease TERM 889 608674 - 608624 - T 81 -10.8 -2.60941 | opp_overlap 608624 608630, overlap 608630 ACTATATTTTAGAAT TTAAAAGATGGTTCTTCAAAAT GTATTTA ATCTTGAGGAACCATCTTTTTA GTTATTATAAATTAT TERM 890 608624 - 608674 + T 82 -10.8 -2.90804 | opp_overlap 608624 608630, overlap 608630 ACTATATTTTAGAAT TTAAAAGATGGTTCTTCAAAAT GTATTTA ATCTTGAGGAACCATCTTTTTA GTTATTATAAATTAT TERM 891 608668 - 608630 - T 95 -9.8 -4.3208 | opp_overlap 608624 608630, overlap 608624 TTTTAGAATTTAAAA GATGGTTCTTCAAAAT GTATTTA ATCTTGAGGAACCATC TTTTTAGTTATTATA TERM 892 608630 - 608668 + T 100 -9.8 -5.01845 | opp_overlap 608630 608624, overlap 608624 TTTTAGAATTTAAAA GATGGTTCTTCAAAAT GTATTTA ATCTTGAGGAACCATC TTTTTAGTTATTATA CLK_3707 609182 - 608712 - | hypothetical protein TERM 893 609307 - 609273 - R 71 -8.2 -2.93891 | opp_overlap 609270 609260 609281, overlap 609260 609270 609278 ATTTTCAAAATATTA TAAAATAATTTTGAAA TCA TCTCAAAACTATTTCA AAAAAAACATTAAAA TERM 894 609302 - 609278 - R 74 -5.9 -4.60713 | opp_overlap 609270 609260 609281, overlap 609260 609273 609270 CAAAATATTATAAAA TAATTTTGAAA TCA TCTCAAAACTA TTTCAAAAAAAACAT CLK_3708 610562 - 609300 - | arsenical pump family protein CLK_3709 612029 - 610689 - | hypothetical protein TERM 895 611633 - 611672 + g 89 -10.5 -3.76778 | CATTTTTTTCATGAT TTTTTAGTAAATTATTT GTATAG AAATAATTTACTAAAGA TTCTTCATCAGTTTT trmB 612304 - 612957 + | tRNA (guanine-N(7)-)-methyltransferase CLK_3711 613170 - 613433 + | hypothetical protein TERM 896 613456 - 613501 + T 100 -15.3 -3.01119 | gap 1, opp_overlap 613456 613464, overlap 613458 613464 TATTCTTTTAAATAA TATTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAATA TATCTCTAAATAAAT TERM 897 613501 - 613456 - T 100 -13.1 -3.9122 | gap 1, opp_overlap 613456 613458 613464, overlap 613464 TATTCTTTTAAATAA TATTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAATA TATCTCTAAATAAAT TERM 898 613458 - 613499 + T 95 -13.5 -3.05993 | gap 1, opp_overlap 613456 613464, overlap 613456 613464 TTCTTTTAAATAATA TTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAA TATATCTCTAAATAA TERM 899 613493 - 613464 - T 72 -5.9 -4.52347 | gap 1, opp_overlap 613458 613456 613464, overlap 613456 TAAATAATATTAAAA CAGGTATTTCTATA AAT TA-AGGAATACCTG TTTTAATATATCTCT TERM 900 613464 - 613493 + T 82 -8.1 -4.41956 | gap 1, opp_overlap 613464 613456, overlap 613458 613456 TAAATAATATTAAAA CAGGTATTTCTATA AAT TA-AGGAATACCTG TTTTAATATATCTCT CLK_3712 614022 - 613528 - | putative thiol peroxidase TERM 901 614350 - 614336 - H 86 -4.4 -5.92337 | ATATAGCAAAAAAAA TTTAAT TAA ATTAAA AATTGTACTAAAGAA fabG 614404 - 615147 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 902 615438 - 615425 - g 74 -5.3 -4.90321 | overlap 615436 AAAAATAAGAGAAAA GAATG TAGA CATTC CTATAGTTATACTAA CLK_3714 615210 - 616163 + | response regulator TERM 903 616254 - 616209 - T 72 -6.2 -4.52101 | gap 1, opp_overlap 616217, overlap 616217 AAGAAGTAAGCAAAA GAAGGAAAGGCCC-CCAGCAA TTATT TTGCGGGTAGGCCTTTTATTC ATACTAAAATCTACT TERM 904 616246 - 616217 - T 73 -6.4 -4.21737 | gap 1, opp_overlap 616217, overlap 616209 AGCAAAAGAAGGAAA GGCCC-CCAGCAA TTATT TTGCGGGTAGGCC TTTTATTCATACTAA CLK_3715 618603 - 616303 - | putative peptidoglycan hydrolase TERM 905 618740 - 618720 - H 82 -9.9 -2.94704 | opp_overlap 618717 618716 618720 TAATAATATACCATA TTTTGGAAT AAG ATTCCAAAA TGCATTTCATATACT TERM 906 618720 - 618740 + H 79 -9.9 -2.69869 | opp_overlap 618720, overlap 618717 618716 TAATAATATACCATA TTTTGGAAT AAG ATTCCAAAA TGCATTTCATATACT TERM 907 619470 - 619460 - g 82 -4 -5.60689 | GGATATAATAAAAAA TTTG AAC CAAA TAGAACAGAATTTGA CLK_3716 618911 - 619855 + | alpha/beta fold family hydrolase TERM 908 619867 - 619908 + F 100 -17.7 -5.56568 | opp_overlap 619869 619881 GTAAATGGTGTTTAA TATGTGGTTAGAAAGATAT TTTA ATATCTCTCTAACCACATA TTTTTTTAATAATAT TERM 909 619906 - 619869 - f 100 -18.1 -3.0264 | opp_overlap 619867, overlap 619881 AAATGGTGTTTAATA TGTGGTTAGAAAGATAT TTTA ATATCTCTCTAACCACA TATTTTTTTAATAAT TERM 910 621124 - 621107 - g 70 -3.5 -5.12916 | opp_overlap 621099, overlap 621099 CATAAAATAATAAAA TTATTCT CTAA AGAACAA ATGAATGAAATTATG CLK_3717 620117 - 621364 + | response regulator TERM 911 621618 - 621577 - f 100 -19.2 -3.01119 | opp_overlap 621577, overlap 621582 621587 ATTTAGCTAGATATA GCCAACATAATTAGTTTA AATATG TAAACTAATTATGTTGGC TTTTGTTTTTATAAA TERM 912 621577 - 621618 + F 100 -19.2 -5.35224 | opp_overlap 621577 621582 621587 ATTTAGCTAGATATA GCCAACATAATTAGTTTA AATATG TAAACTAATTATGTTGGC TTTTGTTTTTATAAA TERM 913 621613 - 621582 - f 87 -10.5 -3.17797 | opp_overlap 621577, overlap 621577 621587 GCTAGATATAGCCAA CATAATTAGTTTA AATATG TAAACTAATTATG TTGGCTTTTGTTTTT CLK_3718 621661 - 622245 + | HDIG domain-containing protein TERM 914 622453 - 622432 - g 70 -5.2 -4.60746 | CTAAAAATATTAAAA TGGAACTT GAAAAT AAGTCCCA AAATGGATCAACTAT TERM 915 623313 - 623300 - g 70 -3.9 -5.10064 | TTTAACATATAAAAA TTCTA TTAA TAGAA AAGATGAATTTGGGG CLK_3719 622281 - 624305 + | methyl-accepting chemotaxis protein TERM 916 624371 - 624327 - f 90 -10.5 -3.47232 | opp_overlap 624329 624333 624370, overlap 624329 624333 ATAATATAAGATTAA GATAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTATT TTTGCAAAAAAATTG TERM 917 624329 - 624369 + F 100 -13.8 -4.56775 | opp_overlap 624327 624329 624333, overlap 624333 AATATAAGATTAAGA TAAAGTTATAAACAATAT TTTAT GTATTGTTTATAACTTTA TTTTTGCAAAAAAAT TERM 918 624369 - 624329 - f 100 -13.1 -3.29445 | opp_overlap 624329 624333, overlap 624327 624333 AATATAAGATTAAGA TAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTA TTTTTGCAAAAAAAT TERM 919 624333 - 624365 + F 100 -10.2 -4.85782 | opp_overlap 624329 624327 624333, overlap 624329 TAAGATTAAGATAAA GTTATAAACAATAT TTTAT GTATTGTTTATAAC TTTATTTTTGCAAAA TERM 920 624365 - 624333 - f 89 -9.5 -4.27467 | opp_overlap 624333 624329, overlap 624329 624327 TAAGATTAAGATAAA GTTATAAACAATA TTTTATG TATTGTTTATAAC TTTATTTTTGCAAAA CLK_3720 624510 - 625304 + | response regulator CLK_3721 625556 - 625431 - | hypothetical protein TERM 921 625718 - 625685 - H 90 -7.7 -4.92385 | overlap 625686 625700 TACATTGAAAGAAAA GTTTACAAGTAAAAA CAAG TTTTCACTTGTAAAA AAGCATAGAGGAATA TERM 922 625717 - 625686 - H 95 -11.2 -3.54346 | overlap 625685 625700 ACATTGAAAGAAAAG TTTACAAGTAAAAA CAAG TTTTCACTTGTAAA AAAGCATAGAGGAAT TERM 923 625713 - 625700 - H 75 -5.3 -4.93365 | overlap 625686 625685 GTTTACAAGTAAAAA CAAGT TTTC ACTTG TAAAAAAGCATAGAG TERM 924 625958 - 625989 + H 100 -8.8 -5.86976 | GTGGCAACGCGGATA CTTCCGTCCCATAT TTAT ATATGAGATGGGAG TTTTTTATTTTATGG serS 626050 - 627327 + | seryl-tRNA synthetase CLK_3723 627925 - 630279 + | putative ATP-dependent helicase CLK_3724 630760 - 630569 - | hypothetical protein CLK_3725 631879 - 631259 - | GntR family transcriptional regulator TERM 925 632075 - 632051 - H 75 -8.8 -3.13728 | opp_overlap 632054, overlap 632054 ATTATTGATATTTAA CAACTTTATA TATGT TATAAAGTTG TAACTATAATAAATA ceo 632134 - 633087 + | N(5)-(carboxyethyl)ornithine synthase TERM 926 633265 - 633218 - T 71 -7.2 -3.8512 | opp_overlap 633218 633225, overlap 633225 TACGGAGCATAAGAA TATAAAAGACCACTTGTATGTT TATA AAAAAGCAAGTGGTCTTTTTTA TTATATTATAAAAGT TERM 927 633218 - 633265 + T 84 -9.4 -3.75378 | opp_overlap 633218 633225, overlap 633225 TACGGAGCATAAGAA TATAAAAGACCACTTGTATGTT TATA AAAAAGCAAGTGGTCTTTTTTA TTATATTATAAAAGT TERM 928 633225 - 633258 + T 100 -7.5 -5.64304 | opp_overlap 633218 633225, overlap 633218 CATAAGAATATAAAA GACCACTTGTATGTT TATA AAAAAGCAAGTGGTC TTTTTTATTATATTA TERM 929 633258 - 633225 - T 73 -5.3 -4.82162 | opp_overlap 633225 633218, overlap 633218 CATAAGAATATAAAA GACCACTTGTATGTT TATA AAAAAGCAAGTGGTC TTTTTTATTATATTA CLK_3727 635297 - 633291 - | fructose-1,6-bisphosphatase CLK_3728 635581 - 635943 + | hypothetical protein CLK_3729 636139 - 636552 + | hemerythrin-like metal-binding domain-containing protein TERM 930 636627 - 636658 + T 95 -12.4 -3.6279 | TAAACAGAGTTCTTG GCTTTAGAGGGAGT TTTT ATTCCCACTAAAGC TTATTAACAGAATTT CLK_3730 637622 - 636927 - | hypothetical protein TERM 931 637859 - 637887 + H 90 -7.6 -4.95155 | opp_overlap 637861, overlap 637861 TTACATAATATATAG TAGCTTTGTATA TTTTT TATACAAGGCTG TTTTTATAATATAAG TERM 932 637861 - 637885 + H 77 -8 -4.09649 | opp_overlap 637861, overlap 637859 ACATAATATATAGTA GCTTTGTATA TTTTT TATACAAGGC TGTTTTTATAATATA TERM 933 637982 - 638007 + H 81 -10.5 -2.6027 | opp_overlap 637984 637999 638000 AGATTATACCTAAAA AACTCCCACTT ATAT AAGTGGGAGTA TAAGTTCACTTTTAC TERM 934 638005 - 637984 - H 100 -13.1 -5.13473 | opp_overlap 637982, overlap 637999 638000 ATTATACCTAAAAAA CTCCCACTT ATAT AAGTGGGAG TATAAGTTCACTTTT TERM 935 638638 - 638622 - g 95 -6.6 -5.98675 | TAGAAAAAGAAAAAA TGGATC CATAT GATCCA TTAAAAAAAACTTGT TERM 936 638737 - 638724 - g 81 -3.9 -5.58522 | CATATAAAATAAAAA TAAGT GGAG ACTTA TATCAAAAATGTGAT CLK_3731 638375 - 638797 + | hypothetical protein TERM 937 638819 - 638844 + T 100 -9.9 -5.47159 | gap 1 TAAATTGTTTTTATA CTGCTGATCAAA TCT TTTG-TCAGCAG TTTTTTATATTGCAA CLK_3732 639560 - 638910 - | Fe/Mn family superoxide dismutase CLK_3733 639753 - 640592 + | metallo-beta-lactamase family protein TERM 938 640591 - 640642 + T 100 -9.3 -4.94992 | gap 2, opp_overlap 640594, overlap 640594 640641 ATATATTAGAAATAT AAAGCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGCTTA TTTTTATACCTTTAA TERM 939 640639 - 640594 - T 100 -11 -4.41609 | gap 2, opp_overlap 640591 640594 TATTAGAAATATAAA GCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGC TTATTTTTATACCTT TERM 940 640594 - 640639 + T 100 -11 -4.55383 | gap 2, opp_overlap 640594, overlap 640591 TATTAGAAATATAAA GCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGC TTATTTTTATACCTT CLK_3734 640989 - 640690 - | hypothetical protein CLK_3735 642990 - 641137 - | hypothetical protein TERM 941 641619 - 641631 + g 90 -6.3 -5.60993 | TAAGTTGAATTGCAA CACTA TTA TAGTG TTTTTTTATAGACAA TERM 942 642544 - 642520 - G 73 -8.7 -3.20832 | overlap 642519 642521 TCTTAAATTTAAAAT TGTCAGTATTA TTA TAATACTGACT GCTAATAAAATCTTA TERM 943 642543 - 642521 - G 100 -12.2 -2.52017 | overlap 642520 642519 CTTAAATTTAAAATT GTCAGTATTA TTA TAATACTGAC TGCTAATAAAATCTT TERM 944 642623 - 642591 - G 70 -8.6 -2.72036 | gap 1, opp_overlap 642615, overlap 642600 GAAAGGCAGAGATTA TTGCAGCAA-CTCCA GCGC TGGAGCTTACCGCAA CGGTTAATATATAAT TERM 945 643061 - 643027 - R 93 -7.4 -5.7506 | opp_overlap 643040 TAAAAAAAAATAAAA TCTTCTTTTAAAATAT ATA ATATATTATAAGAAGA CCAATGTAATTTATT TERM 946 643510 - 643478 - R 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLK_3736 644648 - 644184 - | AsnC family transcriptional regulator TERM 947 644994 - 645006 + H 70 -3.5 -5.39905 | opp_overlap 644950, overlap 644951 645002 ATTATTTACAATCTC TTTTA TGT TAAAA TTTTTATTCTTTAAT TERM 948 645021 - 645037 + H 73 -5.3 -4.79752 | opp_overlap 645023, overlap 645018 645034 ATTTTTATTCTTTAA TATAATA TGT TATTATA TTTTATATTGTTACA TERM 949 645106 - 645069 - H 78 -6.7 -4.74285 | opp_overlap 645067 645069 645073 645099 ATTTATAATATAAAA TTAATATAAACATTTTT AAGT AAAAGTATTTATATTAA TATCTTGATATATTA CLK_3737 645173 - 645547 + | hypothetical protein TERM 950 645572 - 645603 + F 78 -4.5 -5.56112 | opp_overlap 645572 AGTTTCATATAAAAA CACACTAAAATCT AGTTCC AGAGGTTAGTGTG TTTTTTAGTTTTTAT TERM 951 645603 - 645572 - f 72 -5.2 -4.9725 | opp_overlap 645572 AGTTTCATATAAAAA CACACTAAAATCTA GTTC CAGAGGTTAGTGTG TTTTTTAGTTTTTAT TERM 952 646027 - 646006 - f 80 -3.2 -5.83822 | opp_overlap 645997 GAGATTTAAAAAAAA TATTTTTT ATTTCA AAAAAATA TATAAAAACTTAGTA CLK_3738 646171 - 647544 + | amino acid permease family protein TERM 953 647674 - 647711 + F 100 -11.7 -4.98531 | gap 1, opp_overlap 647674 ATTAAGGAACAAAAA GCTATGAATTTTGGAATA TAA TATTCTAAA-TTCATAGC TTTTTACTTTAAAAA TERM 954 647711 - 647674 - f 100 -9.5 -5.20534 | gap 1, opp_overlap 647674 ATTAAGGAACAAAAA GCTATGAATTTTGGAATA TAA TATTCTAAA-TTCATAGC TTTTTACTTTAAAAA TERM 955 647813 - 647836 + F 85 -10.4 -3.02144 | opp_overlap 647803 TGTAACCGCTATTTG CTCCCATTTT GAAG AAGATGGGAG TATTAGAGCGGATAA TERM 956 648319 - 648331 + G 71 -4.9 -4.6902 | TTGGATTATAACTGG TATAG GTT CTATA TTTTTAGCATTGTCC CLK_3739 648161 - 649510 + | amino acid permease family protein TERM 957 649588 - 649607 + F 93 -10 -4.18401 | opp_overlap 649575 649588 649587 TAGACTTATTGAAAG CCCTGTGC AAAT GTACAGGG TTTTAGAATCTATAA CLK_3740 649857 - 650366 + | hexapeptide repeat-containing transferase TERM 958 650443 - 650424 - g 76 -2.8 -5.50723 | TTATGAAAATAAAAA CACCTAGA ACTT TCTTAGTG TTTATTGCTGTAGTA CLK_3741 650411 - 651283 + | metallo-beta-lactamase family protein TERM 959 651338 - 651371 + T 77 -7.8 -4.11744 | gap 1, opp_overlap 651337 651338, overlap 651337 AAATATAAAAAAATG TACTTCATAAACATA TGAAT TA-GTTTATGAAGTA TCTTTTTATCTAAAT TERM 960 651407 - 651423 + T 75 -6.7 -4.49352 | opp_overlap 651410 TAAATTCAATCTATT TAAGTAA TAT TTACTTA TTTATCTTTTAATCT CLK_3742 654039 - 651421 - | calcium-translocating P-type ATPase, PMCA-type TERM 961 652315 - 652293 - G 78 -6.4 -4.74132 | opp_overlap 652292 652293 ATACTCTAGCAAAAA CTCTTAAATT TTC AATTTTAGAG CTTAATTCTGTATCT TERM 962 653478 - 653489 + g 70 -5.8 -4.20712 | overlap 653479 653480 CCATATTTTTTTGAT CACC TAAA GGTG TTTTAGGATCTTCTA TERM 963 654182 - 654149 - R 100 -17.7 -5.38054 | opp_overlap 654151 TTTTATAAATAAAAA GACCTTTGCCCTATA TTTA TATAGGACAAAGGTC TTGCAATCTCTTAAA TERM 964 654151 - 654180 + r 90 -12.3 -3.09648 | opp_overlap 654149 TTATAAATAAAAAGA CCTTTGCCCTATA TTTA TATAGGACAAAGG TCTTGCAATCTCTTA CLK_3743 654869 - 654333 - | chromate transporter protein CLK_3744 655405 - 654869 - | chromate transport protein CLK_3745 655579 - 656169 + | PemK family protein TERM 965 656220 - 656182 - f 78 -4.4 -5.48213 | gap 1, opp_overlap 656182 656192 656208, overlap 656208 TAGTTAAAACAAAAA TTATAAAGAATTTAATA AAAAAA TATTAAATT-TTTATAA ATTTATGTTGTATAA TERM 966 656377 - 656395 + F 93 -7.5 -5.16133 | TATAACATATCATGG GACTGAT TCTAT ATCAGTC TTTTTATATTGTCAT TERM 967 656485 - 656538 + F 73 -5.7 -4.86033 | opp_overlap 656484 656489, overlap 656498 GTTTTTGTAACGAAT TATATCATAAAAATGAACTTCTTAT AAAA ATGGGAGGTTTATTTTTATACTATA TTTTTATGAAAATTT CLK_3746 656601 - 657026 + | hypothetical protein TERM 968 657128 - 657073 - T 100 -21.3 -3.05715 | opp_overlap 657073 657077 657089, overlap 657077 657089 AAGTGTTTTATTTAA TAAATAGACATAAAAATTATTAAAT TTAATG ATTTAATAATTTTTATGTCTATTTA TTATTTAGGCTAGTT TERM 969 657073 - 657128 + T 100 -22 -3.95036 | opp_overlap 657073 657077 657089, overlap 657077 657089 AAGTGTTTTATTTAA TAAATAGACATAAAAATTATTAAATT TAAT GATTTAATAATTTTTATGTCTATTTA TTATTTAGGCTAGTT TERM 970 657077 - 657124 + T 100 -18.4 -4.57581 | opp_overlap 657073 657077 657089, overlap 657073 657089 GTTTTATTTAATAAA TAGACATAAAAATTATTAAATT TAAT GATTTAATAATTTTTATGTCTA TTTATTATTTAGGCT TERM 971 657124 - 657077 - T 100 -17.7 -4.20516 | opp_overlap 657077 657073 657089, overlap 657073 657089 GTTTTATTTAATAAA TAGACATAAAAATTATTAAAT TTAATG ATTTAATAATTTTTATGTCTA TTTATTATTTAGGCT TERM 972 657089 - 657112 + T 74 -4.8 -5.1104 | opp_overlap 657077 657073 657089, overlap 657077 657073 AAATAGACATAAAAA TTATTAAATT TAAT GATTTAATAA TTTTTATGTCTATTT TERM 973 657112 - 657089 - T 70 -4.1 -5.1104 | opp_overlap 657089 657077 657073, overlap 657077 657073 AAATAGACATAAAAA TTATTAAAT TTAATG ATTTAATAA TTTTTATGTCTATTT TERM 974 657187 - 657157 - T 90 -10.6 -3.37205 | opp_overlap 657157 657156, overlap 657155 TTATAAAAATAGATA GTGCCTCAAAATTA AAT TTATTTTGAGACAC GTTATTAAATTTCAA nadE 659148 - 657232 - | glutamine-dependent NAD(+) synthetase TERM 975 658294 - 658306 + g 71 -4.9 -4.77986 | ATTCATTGAGTTATC TGTAA AGC TTACA TTTTTAAGTCTTTCG TERM 976 659429 - 659447 + G 78 -3 -5.5454 | TGCTACTTTGCTGTT GGATCTTG CTA CTAGTTCC TTTTTATTTGTTTGG CLK_3748 659370 - 659810 + | hypothetical protein CLK_3749 659813 - 660751 + | SPFH domain-containing protein/band 7 family protein TERM 977 660793 - 660753 - f 81 -7.1 -4.77442 | opp_overlap 660756 660758, overlap 660756 660758 AAGATAATAAATAAA GAATATCCATAGATTTG ATTTACA CAAATCTATGGATGTTT TTTTATCTAACAATT TERM 978 660756 - 660790 + F 100 -11 -5.71712 | opp_overlap 660753 660756 660758, overlap 660758 ATAATAAATAAAGAA TATCCATAGATTTG ATTTACA CAAATCTATGGATG TTTTTTTATCTAACA TERM 979 660790 - 660756 - f 86 -8.8 -4.45024 | opp_overlap 660756 660758, overlap 660753 660758 ATAATAAATAAAGAA TATCCATAGATTTG ATTTACA CAAATCTATGGATG TTTTTTTATCTAACA TERM 980 660788 - 660758 - f 95 -11.4 -3.79677 | opp_overlap 660756 660758, overlap 660756 660753 AATAAATAAAGAATA TCCATAGATTTG ATTTACA CAAATCTATGGA TGTTTTTTTATCTAA TERM 981 660758 - 660788 + F 100 -11.4 -4.50122 | opp_overlap 660758 660756 660753, overlap 660756 AATAAATAAAGAATA TCCATAGATTTG ATTTACA CAAATCTATGGA TGTTTTTTTATCTAA TERM 982 660833 - 660848 + G 71 -7.6 -3.50808 | opp_overlap 660832 660833 660835 AATTAGAGGAAATAT TATGGG ATAC CCCATA TGTTATTGTGATAGA CLK_3750 660784 - 660924 + | hypothetical protein CLK_3751 661113 - 661922 + | CAAX amino terminal protease family protein TERM 983 663153 - 663139 - g 71 -7.2 -3.81144 | opp_overlap 663136 663135, overlap 663135 ATAAAAAAGAATTAA GGAAAT ATT ATTTCC ATAGTTTTGGACATT pepP 662142 - 663377 + | xaa-pro aminopeptidase TERM 984 663379 - 663365 - T 73 -5.8 -4.91194 | AGAAGAAATAGAAAA CTTTAT GAA ATAAAG GAATTACAACTTAAA CLK_3753 664312 - 663863 - | hypothetical protein CLK_3754 664902 - 664381 - | acetyltransferase CLK_3755 665418 - 664969 - | AraC family transcription regulator CLK_3756 665813 - 666025 + | 2Fe-2S-binding domain-containing protein TERM 985 666213 - 666168 - f 100 -13 -4.67234 | opp_overlap 666171, overlap 666171 ATTTAATGTTAAAAA TAAGCACTATGAACATTATT GAAATA AATAATATTCATAGTGCTTT TATTAGATTGTTATA TERM 986 666171 - 666210 + F 100 -12.5 -4.74539 | opp_overlap 666168 666171 TAATGTTAAAAATAA GCACTATGAACATTATT GAAATA AATAATATTCATAGTGC TTTTATTAGATTGTT TERM 987 666210 - 666171 - f 100 -14.7 -4.44355 | opp_overlap 666171, overlap 666168 TAATGTTAAAAATAA GCACTATGAACATTATT GAAATA AATAATATTCATAGTGC TTTTATTAGATTGTT CLK_3757 666647 - 666796 + | hypothetical protein CLK_3758 667151 - 668059 + | hypothetical protein CLK_3759 668487 - 668996 + | hypothetical protein CLK_3760 669008 - 670651 + | carbon starvation protein CstA TERM 988 671403 - 671436 + G 70 -6.3 -4.08064 | opp_overlap 671402 671403 671412, overlap 671406 AATGTTTCAATTAAG GAATTTAAATATATT ATAT AATGTATCTAAATTC TTTTGGGCAGGAATT CLK_3761 671191 - 671880 + | hypothetical protein TERM 989 672041 - 672067 + F 86 -4.6 -5.84381 | TTTTTTATATTGGTG GTTTTAAAATTA ATT TTATTTTGAAAC TTTTTTTATTGCTAA TERM 990 672218 - 672208 - f 70 -2.6 -5.60864 | opp_overlap 672208 GAGATATTAAAAAAA TTTT TTG AAAA TTAAATTTTAAATGA TERM 991 672460 - 672473 + F 70 -4.5 -5.07011 | overlap 672461 TTTAGCTGTCAACGG TTGGG GAGG CCCAG TTTTTAATTTATATA TERM 992 672626 - 672650 + F 72 -5.2 -4.92385 | opp_overlap 672626, overlap 672627 TAGTTTCAAATAGAT TCTATTATAA TTAAC TTATAATAGG TTTTATTTAAATGTG TERM 993 673747 - 673713 - g 76 -3.8 -5.41143 | TATTCTCTAAAAAAA TAATAAATCCTATA AGAAAAA TAGAGGATTCATTA GCCTGTATGAAGGAT TERM 994 674687 - 674676 - g 70 -5.8 -4.22554 | CTACTGAAGAAATAA CTGC ATCA GCAG AGGAACAGGCAGCAG CLK_3762 672797 - 674788 + | methyl-accepting chemotaxis protein TERM 995 674799 - 674822 + T 100 -8.2 -5.72622 | opp_overlap 674799 TATAAGTTTGAAAAG GCTGGCAATA ATAA TATTGCTGGC TTTTTTGTTTATAAA CLK_3763 676819 - 675161 - | ABC transporter, ATP-binding protein TERM 996 675845 - 675871 + g 70 -3.7 -5.16472 | TAAAGTTGTTTTACC GCAGCCATTTT CACCA ATAATAGCTGC TTTTTTACCGTTTTT TERM 997 676849 - 676827 - H 93 -7 -5.69473 | GATACCATAAAAAAA TCCCTCCTTA AAT TTAGGAGAGA GTATATAATAATTCC mscL 677513 - 677914 + | large conductance mechanosensitive channel protein CLK_3765 678280 - 678963 + | proton-coupled thiamine transporter YuaJ TERM 998 679006 - 678974 - T 100 -15.1 -5.46698 | opp_overlap 678975 679005, overlap 678975 GGTAAAATTAAAAAA TGGGGTATTTCAAAA TCA TTTTGAAATACCCCT TTTTAAATTTTTAAA TERM 999 678975 - 679005 + T 100 -18.6 -4.92239 | opp_overlap 678974 678975 GTAAAATTAAAAAAT GGGGTATTTCAAAA TCA TTTTGAAATACCCC TTTTTAAATTTTTAA TERM 1000 679005 - 678975 - T 100 -18.6 -3.86392 | opp_overlap 678975, overlap 678974 GTAAAATTAAAAAAT GGGGTATTTCAAAA TCA TTTTGAAATACCCC TTTTTAAATTTTTAA CLK_3766 679233 - 679096 - | hypothetical protein CLK_3767 679487 - 680623 + | SecC motif-containing protein TERM 1001 681188 - 681157 - f 83 -9.6 -3.54771 | opp_overlap 681157 681156, overlap 681159 TTGACAATACTATAA CACTAGTGTACTAT TTAG ATAGTACACTAGAA CTTTGGAGGTGAAGT TERM 1002 681186 - 681159 - f 100 -14.4 -3.3442 | opp_overlap 681157 681156, overlap 681157 GACAATACTATAACA CTAGTGTACTAT TTAG ATAGTACACTAG AACTTTGGAGGTGAA CLK_3768 681205 - 681585 + | GntR family transcriptional regulator CLK_3769 681578 - 682273 + | ABC transporter, ATP-binding protein CLK_3770 682273 - 683034 + | putative ABC transporter, permease protein TERM 1003 683105 - 683057 - f 85 -8.3 -4.59773 | opp_overlap 683064, overlap 683058 TTTTATTGGTAAAAA TGACAAAGGGTGTCTTAAAATTA AAT TTATTTTAAGGCGCCCTTTATCC GATGACTACCTGCTC TERM 1004 683104 - 683058 - f 95 -11.8 -3.35542 | opp_overlap 683064, overlap 683057 TTTATTGGTAAAAAT GACAAAGGGTGTCTTAAAATTA AAT TTATTTTAAGGCGCCCTTTATC CGATGACTACCTGCT TERM 1005 683064 - 683098 + F 100 -11.6 -3.89822 | opp_overlap 683058 683057 GGTAAAAATGACAAA GGGTGTCTTAAAATTA AAT TTATTTTAAGGCGCCC TTTATCCGATGACTA TERM 1006 684088 - 684116 + F 100 -10.3 -4.56969 | overlap 684091 TTTATTGTAAAGTCT TTACCCCTGCG ATTTTTA CGCAGGGGTTA TTTATTTATAAAATT TERM 1007 684091 - 684113 + F 100 -12 -4.38748 | overlap 684088 ATTGTAAAGTCTTTA CCCCTGCG ATTTTTA CGCAGGGG TTATTTATTTATAAA TERM 1008 684335 - 684325 - g 72 -4 -5.16237 | AATGTTAGTAAAAAA TTCT TGG AGAA TAAATCTTTAGCTGT TERM 1009 684978 - 684990 + G 70 -6.3 -4.15222 | opp_overlap 684966 684978 684974 AAGGCCAAAAACTAA GTTTG TTG CAAAC TTTATTGGAGAAACT TERM 1010 685335 - 685317 - g 71 -3.1 -5.20333 | overlap 685320 CACCCATAATAAAAA CTATGTG TTTGC CACATGG AATCCTAAACATGCA potA 684283 - 685365 + | spermidine/putrescine ABC transporter, ATP-binding protein TERM 1011 685893 - 685847 - g 73 -8.3 -3.54256 | gap 1, opp_overlap 685859, overlap 685845 ACTTTTAAAAACAGA GGGAGT-AATTAACACATATCT TATG AGATTTGGATTAATTCACTCCC CAATGCAAATGCTTT potB 685365 - 686324 + | spermidine/putrescine ABC transporter, permease protein PotB TERM 1012 687416 - 687404 - g 72 -2.7 -5.34309 | ATGACTAAACAAAAA TTAGT TCA ACCAA TAGACAAAAATAATG CLK_3773 686327 - 688168 + | putative spermidine/putrescine ABC transporter, permease protein/spermidine/putrescine-binding protein TERM 1013 688183 - 688216 + TF 100 -11.3 -6.14618 | opp_overlap 688179 GAATAAAAGATTTCA CCAAGTAAAGGATTA TTTT TAATTTTTTACTTGG TTTTTTTATTTTGTA CLK_3774 689427 - 688558 - | AraC family transcriptional regulator CLK_3775 689420 - 689554 + | hypothetical protein TERM 1014 690043 - 690032 - g 71 -5.8 -4.4634 | opp_overlap 690041, overlap 690033 690034 AACCTTAATAATAAA CCCT ACAA AGGG TGTAGATCCTTCTAC CLK_3776 689733 - 690986 + | proton/sodium-glutamate symporter TERM 1015 691314 - 691282 - f 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLK_3777 691412 - 691543 + | hypothetical protein CLK_3778 691700 - 692704 + | CAAX amino terminal protease family protein CLK_3779 693866 - 693018 - | pentapeptide repeat-containing protein TERM 1016 694782 - 694756 - H 75 -6.8 -4.49167 | opp_overlap 694751 694756 694759 694764, overlap 694751 694764 AATAGAAGAGGAAAA TAAAAAAATTGA TTT TCAATTTTATTA GTTAATAATTGACAA TERM 1017 694774 - 694764 - H 86 -4 -6.11229 | opp_overlap 694751 694759 694756 694764, overlap 694751 694756 AGGAAAATAAAAAAA TTGA TTT TCAA TTTTATTAGTTAATA TERM 1018 694850 - 694817 - H 91 -10.5 -3.59023 | opp_overlap 694817 TCTATACAATGATAA TATGAAGTTAACTTC ACAT GAAGCTTACTTCATA TTTTTATTTTCAGGG TERM 1019 694817 - 694850 + H 100 -8.3 -5.45802 | opp_overlap 694817 TCTATACAATGATAA TATGAAGTTAACTTC ACAT GAAGCTTACTTCATA TTTTTATTTTCAGGG TERM 1020 694936 - 694924 - g 72 -7.7 -3.60348 | opp_overlap 694923 694924 TCCAATATGACACAA CAGCA GCT TGCTG ATTTAGTTTCAGTTT CLK_3781 694876 - 695088 + | DNA binding protein TERM 1021 695216 - 695230 + G 74 -7.2 -3.9392 | opp_overlap 695204 695216 695214, overlap 695204 AAATCTATTATAATA GATACA TTT TGTATC TTATTTGGAGTAACA CLK_3782 695078 - 695515 + | hypothetical protein lepB 695583 - 696191 + | signal peptidase I TERM 1022 696267 - 696303 + F 100 -14.1 -5.30686 | opp_overlap 696267 TAAAATTACAAAAAA TTAAAGTGGTATTTGTT TTT AGCAAATATCACTTTAA TTTTTTATAGATATT TERM 1023 696303 - 696267 - f 100 -9.7 -5.4588 | opp_overlap 696267 TAAAATTACAAAAAA TTAAAGTGGTATTTGTT TTT AGCAAATATCACTTTAA TTTTTTATAGATATT TERM 1024 696816 - 696836 + F 100 -8.5 -5.42975 | opp_overlap 696816 696820 AGAAAGTTTTAAAAA TAAATTTTG TTT CAAAATTTA TTTTTATTTATGTAC TERM 1025 696836 - 696816 - f 85 -8.5 -4.6526 | opp_overlap 696816, overlap 696820 AGAAAGTTTTAAAAA TAAATTTTG TTT CAAAATTTA TTTTTATTTATGTAC TERM 1026 696832 - 696820 - f 70 -4.9 -4.86385 | opp_overlap 696816, overlap 696816 AGTTTTAAAAATAAA TTTTG TTT CAAAA TTTATTTTTATTTAT TERM 1027 697693 - 697677 - g 71 -3.1 -5.25906 | ATAAATTAACAAAAA TATTAAA AAA TTCAATA TGGCTTTAAAGAAAG CLK_3784 697001 - 697702 + | LytTr family DNA-binding response regulator TERM 1028 698089 - 698079 - f 76 -2.6 -5.98675 | overlap 698072 TATAAAAATAAAAAA TTTA TAC TAAA TGCATCCATTAAATA CLK_3785 698296 - 698415 + | hypothetical protein CLK_3786 698455 - 698580 + | hypothetical protein CLK_3787 699274 - 699420 + | hypothetical protein CLK_3788 700208 - 701560 + | radical SAM domain-containing protein TERM 1029 701822 - 701857 + G 100 -13 -3.53224 | opp_overlap 701822 TGAGAGTGTTGAAAA TTTAATATTACATGAA TTTG TTCATGTAGTATTAAA TTTAAAGACACAATC TERM 1030 701857 - 701822 - g 100 -10.8 -4.10657 | opp_overlap 701822 TGAGAGTGTTGAAAA TTTAATATTACATGAA TTTG TTCATGTAGTATTAAA TTTAAAGACACAATC CLK_3789 701553 - 702143 + | hypothetical protein CLK_3790 702180 - 702677 + | hypothetical protein TERM 1031 703208 - 703220 + G 85 -3.5 -5.8187 | TAATGGTTATTTTTT TATAT GCA ATATA TTTTTTTATTAACTG CLK_3791 702712 - 704424 + | putative ABC transporter, ATP-binding protein/permease protein CLK_3792 704458 - 705207 + | putative lipoprotein CLK_3793 705230 - 705709 + | acetyltransferase TERM 1032 705783 - 705755 - g 76 -3.9 -5.48028 | opp_overlap 705758, overlap 705758 TAAAGAAAAATAAAA TTAGATACATGTT ATT AACTTGTACCTTA GTTTTATCTACAATT TERM 1033 707791 - 707774 - g 95 -7.1 -5.97979 | opp_overlap 707774 707772 ATAATAACAAAAAAA CATTTAC CATA GTAAATG TCTTAATATGTATCT CLK_3794 705706 - 708174 + | putative ABC transporter, permease protein CLK_3795 708189 - 708869 + | ABC transporter, ATP-binding protein TERM 1034 709116 - 709087 - f 88 -5.1 -5.90231 | opp_overlap 709087 ATAAACATAAAAAAA CTATCAAGGATAT AAGG AAATCTTTGATAG TTTTATGCATATAAA TERM 1035 709087 - 709116 + F 77 -7.3 -4.45083 | opp_overlap 709087 ATAAACATAAAAAAA CTATCAAGGATAT AAGG AAATCTTTGATAG TTTTATGCATATAAA CLK_3796 709391 - 709654 + | hypothetical protein TERM 1036 709909 - 709871 - f 77 -3.4 -5.77856 | opp_overlap 709872, overlap 709872 709875 AATAAATTAAAAAAA TTAAGGTATAATAAATAT ATA AAATTTATTATATCTTAT TTTTTTTGAATCTAT TERM 1037 709872 - 709908 + F 100 -9.1 -5.83822 | opp_overlap 709871 709872 709875 ATAAATTAAAAAAAT TAAGGTATAATAAATAT ATA AAATTTATTATATCTTA TTTTTTTTGAATCTA TERM 1038 709908 - 709872 - f 71 -6.9 -4.03053 | opp_overlap 709872, overlap 709871 709875 ATAAATTAAAAAAAT TAAGGTATAATAAATAT ATA AAATTTATTATATCTTA TTTTTTTTGAATCTA CLK_3797 709992 - 710858 + | degV family protein TERM 1039 710930 - 710975 + F 86 -4.4 -5.84432 | gap 1, opp_overlap 710930 TAAATAAATTAAAAG CCTTAATCATAAAGTAAATTT TTTTT AAAAGTACTTTAT-ATTAAGG TTTTTTTGTGTTATA CLK_3798 711255 - 711767 + | hypothetical protein TERM 1040 711801 - 711833 + T 86 -3.7 -5.99154 | gap 1, opp_overlap 711794 ACTACAAATAAAAAA TACAC-TAGTAAAC TCATAT GTTTATTACGTGTA TTTTTTTATTTGCTA CLK_3799 711930 - 711814 - | hypothetical protein TERM 1041 711912 - 711891 - G 72 -5.2 -4.82901 | opp_overlap 711876 711891 GTTTTTTCATAAAAA GCCTTATA TTTATG CATAAGGC TTTATTTATAATTTG TERM 1042 712065 - 712099 + H 78 -5.3 -5.26155 | AGAAAAGTTAATACG TTGATTTTATATTTG ATATA CAAATTTAAAATTAA TTTTTATCTTTCTAT TERM 1043 713464 - 713452 - g 70 -3.5 -5.01732 | AATCTTTGGAAAAAA TTAAA ACT TTTAA ACAACCTTTTTATAG CLK_3800 712254 - 714164 + | sulfatase family protein TERM 1044 714195 - 714250 + T 100 -12.3 -4.5954 | opp_overlap 714192 714195 714197, overlap 714192 714197 TCAATTTAATAATAA CAGGGTTATGTTAAGAAATTATTAT ACTAAC ATTATATTTTCTTAACATAACCCTA TTTTATATAATATAA TERM 1045 714250 - 714195 - T 100 -15.2 -3.99494 | opp_overlap 714192 714195 714197, overlap 714192 714197 TCAATTTAATAATAA CAGGGTTATGTTAAGAAATTATTATA CTAA CATTATATTTTCTTAACATAACCCTA TTTTATATAATATAA TERM 1046 714197 - 714248 + T 100 -14.9 -3.90416 | opp_overlap 714192 714197 714195, overlap 714192 714195 AATTTAATAATAACA GGGTTATGTTAAGAAATTATTAT ACTAAC ATTATATTTTCTTAACATAACCC TATTTTATATAATAT TERM 1047 714248 - 714197 - T 100 -15.6 -3.57992 | opp_overlap 714192 714195 714197, overlap 714192 714195 AATTTAATAATAACA GGGTTATGTTAAGAAATTATTATA CTAA CATTATATTTTCTTAACATAACCC TATTTTATATAATAT CLK_3801 715712 - 714300 - | sigma-54 dependent transcriptional regulator TERM 1048 715891 - 715870 - R 82 -10.3 -2.84978 | opp_overlap 715866, overlap 715869 TGATAATTGAACAAG CTTCTCAAT TGGA ATTGAGAAG AAAGTGATTTGTTTT TERM 1049 716103 - 716045 - R 72 -7.7 -3.51924 | gap 2, overlap 716048 GCTCTATTTATACAA TAACTACCCGCTCTAATACTCCAATCTTC TTC AAAG-TGGAAGCAA-AGAGCGGGTAGTCA TCGGATAATCATTTT TERM 1050 716100 - 716048 - R 71 -7.2 -3.8969 | gap 2, overlap 716045 CTATTTATACAATAA CTACCCGCTCTAATACTCCAATCTTC TTC AAAG-TGGAAGCAA-AGAGCGGGTAG TCATCGGATAATCAT TERM 1051 716120 - 716157 + r 84 -9.3 -3.72396 | opp_overlap 716124 716142, overlap 716124 CGGATAATCATTTTC TAAACTTTAGTGGGAGT AAAA ACTCCCTATGAAGTTTA TTCTATATTAATATT CLK_3802 717383 - 716160 - | NupC family nucleoside transporter TERM 1052 716407 - 716419 + g 75 -4.1 -5.26316 | overlap 716408 GAATATGCTACGAAC TCGTT TAT AACGG TTTTTTGTCCAATAA TERM 1053 716609 - 716596 - G 72 -5.3 -4.76075 | ATTATAGCAACAAAA GCTAT TAAC ATAGC ACCAACATTAAGAGC TERM 1054 717459 - 717440 - H 100 -7.2 -6.07374 | gap 1, opp_overlap 717440 ATAAAAAATAAAAAA GCCTTCACA ATA TG-GAAGGC TTAAATATAAACACA TERM 1055 717537 - 717510 - H 82 -9.4 -3.41125 | overlap 717511 717536 CGTATACATTTACAA CCTTCATATTAT TATA ATAATATGAAGA AAAATTTACTTTTCT TERM 1056 717536 - 717511 - H 81 -10.7 -2.64354 | overlap 717510 GTATACATTTACAAC CTTCATATTAT TATA ATAATATGAAG AAAAATTTACTTTTC TERM 1057 717822 - 717803 - H 72 -7.8 -3.5393 | overlap 717814 ACCATCTTCTTTAAA GTGGGAGT AAAG ACTCCCTC TGAAGCCAAGAACTC TERM 1058 718391 - 718416 + H 100 -11.9 -5.97979 | opp_overlap 718391 ACCGCGGAATATATA CCTTTCGTCCC TGTA GGGATGAAGGG TTTTTTTATTATTAT asnS 718461 - 719852 + | asparaginyl-tRNA synthetase TERM 1059 719887 - 719901 + T 82 -5.7 -5.48054 | opp_overlap 719886 AGTAGCTTACCAATT GTAGC GCTGG GCTAC TTTTTTACTTTTAAT CLK_3804 721574 - 719937 - | MDR-type permease CLK_3805 721730 - 722374 + | AcrR family transcriptional regulator TERM 1060 722571 - 722543 - f 77 -9 -3.39438 | opp_overlap 722543 722549, overlap 722535 722549 CAAATAATTATAATA TAAAAACCTCAG TATAT CTGAGGTTTTTG GTATTTGTAAATTTA TERM 1061 722543 - 722571 + F 83 -11.2 -2.75274 | opp_overlap 722535 722543 722549, overlap 722549 CAAATAATTATAATA TAAAAACCTCAG TATAT CTGAGGTTTTTG GTATTTGTAAATTTA TERM 1062 722565 - 722549 - f 93 -8 -5.16133 | opp_overlap 722549 722543, overlap 722543 ATTATAATATAAAAA CCTCAG TATAT CTGAGG TTTTTGGTATTTGTA TERM 1063 722549 - 722565 + F 90 -8 -4.96106 | opp_overlap 722543 722549, overlap 722543 ATTATAATATAAAAA CCTCAG TATAT CTGAGG TTTTTGGTATTTGTA TERM 1064 722901 - 722865 - f 70 -7 -3.75153 | opp_overlap 722865 722865 722869, overlap 722869 TTTTGTTAATTGAAA TAAATATAAATATAAA AAATA TATATATTTATATTTA GTTATAAATTTCTAT CLK_3806 722994 - 723314 + | PadR family transcriptional regulator CLK_3807 723330 - 724055 + | hypothetical protein CLK_3808 724354 - 725085 + | transcriptional regulator, AraC family protein CLK_3809 725312 - 726064 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein CLK_3810 726417 - 726872 + | LytR family transcriptional regulator CLK_3811 726874 - 727572 + | hypothetical protein TERM 1065 727853 - 727901 + G 100 -15.8 -3.21981 | opp_overlap 727852 727853 727855, overlap 727858 727863 AAAAGAGTATAGAAC TAGAATAAAGCCTTTGTACTTT ATAAA AAAGTATGAAGGTTTTATTCTA TATTAGTGCTATTTT TERM 1066 727901 - 727853 - g 74 -9.2 -2.77401 | opp_overlap 727853 727858 727863, overlap 727852 727855 AAAAGAGTATAGAAC TAGAATAAAGCCTTTGTACTTT ATAAA AAAGTATGAAGGTTTTATTCTA TATTAGTGCTATTTT TERM 1067 727858 - 727896 + G 86 -9.9 -3.71124 | opp_overlap 727855 727853 727852, overlap 727853 727863 AGTATAGAACTAGAA TAAAGCCTTTGTACTTT ATAAA AAAGTATGAAGGTTTTA TTCTATATTAGTGCT TERM 1068 727863 - 727891 + G 88 -7.6 -4.90002 | opp_overlap 727855 727853 727852, overlap 727858 727853 AGAACTAGAATAAAG CCTTTGTACTTT ATAAA AAAGTATGAAGG TTTTATTCTATATTA CLK_3812 727707 - 727907 + | hypothetical protein CLK_3813 728120 - 729007 + | AraC family transcriptional regulator TERM 1069 729024 - 729055 + F 79 -7.3 -4.57275 | opp_overlap 729024 TTATTATATATCTAA GGTTTGGCTCCCA TACTCT TTGGAGCTAGACC TTTTAAATTTTTTTG TERM 1070 729309 - 729294 - f 77 -7.6 -4.1585 | opp_overlap 729287 729294 CTATAACCGTTAAAA CCTTGA AAAT TCAAGG ATGTTAACTTTGGTT CLK_3814 729436 - 730347 + | CAAX amino terminal protease family protein CLK_3815 730360 - 730752 + | DNA-binding protein CLK_0001 731350 - 732489 + | putative lipoprotein TERM 1071 733050 - 733040 - g 72 -2.6 -5.36314 | GAAAATATGAAAAAA TTAT TAG ATAA TATAAAATCAAAATT CLK_0002 732686 - 733780 + | putative lipoprotein TERM 1072 733833 - 733875 + F 79 -8.9 -3.54926 | opp_overlap 733838, overlap 733831 733829 733838 TTAAATAGTGGTGAG TATAAGAATATTACTGA AAAAAAGAG TTAGTAATATTCTTATA TGTATTTTTAAAATA CLK_0003 733955 - 734638 + | DNA-binding response regulator CLK_0004 734643 - 736064 + | sensor histidine kinase TERM 1073 736451 - 736432 - g 80 -2.2 -5.66868 | overlap 736433 AAGGAATCAAAAAAA TCATTTTT ATAT AAAAATGG ATACAAGCATTGGTT TERM 1074 736714 - 736700 - g 75 -7.2 -4.14175 | AAGATAATAACCAAA TAGTAG CCG CTACTA GACTTGAAGGTAATG CLK_0005 736105 - 736938 + | acetyltransferase CLK_0006 737011 - 737145 + | hypothetical protein CLK_0007 737261 - 737977 + | D-alanyl-D-alanine carboxypeptidase family protein TERM 1075 738063 - 738041 - g 70 -5 -4.53857 | opp_overlap 738043, overlap 738038 738043 ATGAAAAAGAAATAA GAGATTTATT GGA AATAAATCTT ATAAATGAAGGATAT TERM 1076 738061 - 738043 - g 74 -7.6 -3.84447 | opp_overlap 738043, overlap 738041 738038 GAAAAAGAAATAAGA GATTTATT GGA AATAAATC TTATAAATGAAGGAT CLK_0008 737998 - 738690 + | DNA-binding response regulator CLK_0009 738719 - 739801 + | sensor histidine kinase TERM 1077 739876 - 739855 - T 73 -6.5 -4.20981 | opp_overlap 739856, overlap 739848 739856 TTAATAAATTATAAA GCCCCATGC AAAT GCATAGGGT TTTTGAATAATCTAA TERM 1078 739856 - 739875 + T 83 -7.8 -4.69664 | opp_overlap 739855 739848 739856 TAATAAATTATAAAG CCCCATGC AAAT GCATAGGG TTTTTGAATAATCTA TERM 1079 739875 - 739856 - T 82 -10 -3.11504 | opp_overlap 739856, overlap 739855 739848 TAATAAATTATAAAG CCCCATGC AAAT GCATAGGG TTTTTGAATAATCTA CLK_0010 741100 - 739961 - | hypothetical protein CLK_0011 742055 - 741243 - | response regulator TERM 1080 741379 - 741362 - G 70 -3.5 -5.0925 | CTTCAAAACTAAAAA TAGAATT TGAA AACTCTA CAAAGATGTCATTCA CLK_0012 743350 - 742052 - | sensor histidine kinase TERM 1081 742716 - 742732 + g 70 -5.2 -4.66609 | TTTCCCATGACTTTT TCTATG TTATC CATAGA TTTTTCCATAAGATA TERM 1082 743798 - 743814 + G 85 -2.3 -6.08342 | opp_overlap 743798 TAATTTAAAAAGGCA CATAAAA TAT TTTGATG TTTTTTTGTTTATTG rodA 743745 - 744905 + | rod shape-determining protein RodA CLK_0014 744921 - 745067 + | hypothetical protein cfa 746262 - 745084 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 1083 746335 - 746305 - H 71 -8.6 -3.11559 | opp_overlap 746311, overlap 746311 746315 ATTATAACCCTAATA TTTAAATATATACT TAT AGTAAATATTTAAA GCTAAATGGTCAATT TERM 1084 746428 - 746410 - H 87 -7.4 -5.25799 | overlap 746413 AAAATAATAGAAAAA GAAGTGGT CAT ACCACTAC TAAGATGAAAATAAG TERM 1085 746425 - 746413 - H 83 -7.7 -4.65219 | overlap 746410 ATAATAGAAAAAGAA GTGGT CAT ACCAC TACTAAGATGAAAAT TERM 1086 746481 - 746456 - H 70 -4.1 -5.21236 | overlap 746465 AAGGCATAATAAAAA TGCAAAATATT TTTA AAAATTTCGCA TTTTTAGAAAGGATA TERM 1087 747253 - 747228 - g 81 -4.9 -5.36965 | opp_overlap 747231, overlap 747231 TAATATTATAAAAAA TAATTATAGTA ATAT TACTATAATTC CTGCTCTAGCTTTTA TERM 1088 747250 - 747231 - g 80 -6.6 -4.74611 | opp_overlap 747231, overlap 747228 TATTATAAAAAATAA TTATAGTA ATAT TACTATAA TTCCTGCTCTAGCTT CLK_0016 746590 - 747621 + | hypothetical protein TERM 1089 747613 - 747661 + F 74 -8.5 -3.35371 | opp_overlap 747606 747627 747629, overlap 747627 GAACTTAATAATACA TTATTATAAAAAAATTTCTCAGT ATG ACTGGGAGATTTTTTTATTGAAA TTAATTAGAAATATA TERM 1090 747647 - 747627 - f 73 -2.5 -5.67967 | opp_overlap 747627 747613, overlap 747629 ATTATTATAAAAAAA TTTCTCAGT ATG ACTGGGAGA TTTTTTTATTGAAAT TERM 1091 747627 - 747647 + F 90 -6.9 -5.80364 | opp_overlap 747627 747629, overlap 747613 ATTATTATAAAAAAA TTTCTCAGT ATG ACTGGGAGA TTTTTTTATTGAAAT CLK_0017 747792 - 749471 + | putative ABC transporter, ATP-binding protein/permease protein CLK_0018 749776 - 750108 + | hypothetical protein cat 750967 - 750341 - | chloramphenicol acetyltransferase TERM 1092 750476 - 750499 + g 84 -9 -4.32951 | opp_overlap 750476 750479, overlap 750468 AAAATATTTTCCAAA GGAGATTCTA GGTA TAGAATCTTC TTTATTCATTACAAT TERM 1093 751190 - 751177 - g 76 -3.9 -5.45813 | opp_overlap 751188, overlap 751188 TATGAAAAAAGAAAA GAATT GTTA AATTC TGCTAGAAATGTTTT CLK_0020 751132 - 751749 + | TetR family transcriptional regulator CLK_0021 751852 - 752322 + | acetyltransferase TERM 1094 752362 - 752334 - T 83 -7.5 -4.70772 | opp_overlap 752336 752349, overlap 752336 ATAGATTTAATAAAA TAGGACTTACTGT GAT AAAGTAAGTCCTT GCTTTATTTATTGAG TERM 1095 752336 - 752360 + T 90 -10.1 -3.81574 | opp_overlap 752334 752336, overlap 752349 AGATTTAATAAAATA GGACTTACTGT GAT AAAGTAAGTCC TTGCTTTATTTATTG TERM 1096 752360 - 752336 - T 93 -10.1 -3.96156 | opp_overlap 752336 752349, overlap 752334 AGATTTAATAAAATA GGACTTACTGT GAT AAAGTAAGTCC TTGCTTTATTTATTG csaA 752718 - 752389 - | csaA protein TERM 1097 752870 - 752843 - R 100 -11.6 -5.13521 | opp_overlap 752847 752850, overlap 752832 752831 AAACTATTTAAAAAA TAAAGAACTATT CTAA AATAGTTCTTTA AAACGATATCTATAT TERM 1098 752847 - 752866 + r 72 -8 -3.5525 | opp_overlap 752843, overlap 752850 TATTTAAAAAATAAA GAACTATT CTAA AATAGTTC TTTAAAACGATATCT CLK_0023 753651 - 752926 - | AraC family transcriptional regulator TERM 1099 753962 - 753936 - R 100 -15.4 -4.10855 | opp_overlap 753934 753933 AAAATGTTTTTAAAA TATCCTGTCTAA TTA TTAGACAGGATA AAAATTTGTTATTGT CLK_0024 754502 - 753951 - | cupin domain-containing protein TERM 1100 754586 - 754561 - H 70 -4.1 -5.22258 | opp_overlap 754566, overlap 754566 TAAAGTAAAATAAAA CTAACGTTAAA TATA TTTAACATTCG TAAGATATTATAACG CLK_0025 754759 - 755349 + | HDIG domain-containing protein TERM 1101 755496 - 755472 - f 89 -10 -3.60627 | opp_overlap 755472 TTATTCTAGGGTAAA GCACCAATCC TTAGG GGATAGGTGC TTTTTTCTTTTTGCC TERM 1102 755472 - 755496 + F 100 -10.7 -5.93252 | opp_overlap 755472 TTATTCTAGGGTAAA GCACCAATCCT TAG GGGATAGGTGC TTTTTTCTTTTTGCC CLK_0026 755716 - 756102 + | glyoxalase I TERM 1103 756520 - 756539 + F 88 -6.4 -5.60689 | ATTGTTGAATTTTAA GCTGTGGG AGTA TCCATAGC TTTTTTATTATATAA TERM 1104 756885 - 756902 + G 72 -4.2 -5.0133 | TTTAGAACCCACTGA TTTGAC TATGAT GTCAAA TTTTTTAAGAGGATG TERM 1105 757244 - 757234 - g 76 -5.4 -5.01422 | opp_overlap 757234, overlap 757235 GCACATAAAAATAAA GTTC AAG GAAC TATCGTTGAAACATC TERM 1106 757671 - 757646 - g 76 -7.7 -3.87323 | overlap 757643 757663 757667 TAGTATTAAAGACAA TTGGATTGTTA ACAT TAGCAATCCAA TCCGGATTCCATATA TERM 1107 757978 - 757968 - g 88 -4 -5.72622 | TGGAGAAATAAAAAA CTTT TCA AAAG AACATCCTGATTTTG CLK_0027 756622 - 758517 + | MutS domain-containing protein TERM 1108 758639 - 758605 - T 100 -10.2 -4.83032 | opp_overlap 758605 758606, overlap 758606 ATATTAAATATAAAA CTTTAAAGAGAACTGC GCT ACGGTTCTCTTTAAAA TTTATTATTTACTCT TERM 1109 758605 - 758639 + T 93 -9.5 -4.61162 | opp_overlap 758605 758606, overlap 758606 ATATTAAATATAAAA CTTTAAAGAGAACTG CGCTA CGGTTCTCTTTAAAA TTTATTATTTACTCT TERM 1110 758638 - 758606 - T 95 -11.5 -3.48193 | opp_overlap 758606 758605, overlap 758605 TATTAAATATAAAAC TTTAAAGAGAACTGC GCT ACGGTTCTCTTTAAA ATTTATTATTTACTC TERM 1111 758606 - 758638 + T 95 -13 -3.35071 | opp_overlap 758605 758606, overlap 758605 TATTAAATATAAAAC TTTAAAGAGAACTG CGCTA CGGTTCTCTTTAAA ATTTATTATTTACTC CLK_0028 759528 - 758644 - | hypothetical protein TERM 1112 759263 - 759275 + g 70 -6.3 -4.128 | overlap 759264 ACATCAAATGTAGTT CCAAA TCT TTTGG TTTGTATATCACCAT TERM 1113 759600 - 759647 + H 93 -13.3 -2.90763 | opp_overlap 759600, overlap 759577 759576 759606 TACTTTTTTATAGTA TGAGTTTTATAATTTTAAAAA ATATAA TATTTAAAATTATAAAACTCA TATATAGAATATCAA TERM 1114 759647 - 759600 - H 91 -13.3 -2.62396 | opp_overlap 759577 759576 759600 759606 TACTTTTTTATAGTA TGAGTTTTATAATTTTAAAAA ATATAA TATTTAAAATTATAAAACTCA TATATAGAATATCAA TERM 1115 759958 - 759939 - g 88 -3 -6.04324 | opp_overlap 759930 759939 759945 CTAAAAAACAAAAAA TAATATTA TTTA CAATATTA TTTTTTGCATTAATA CLK_0029 759908 - 760786 + | TPR repeat-containing protein CLK_0030 760918 - 761103 + | hypothetical protein TERM 1116 761270 - 761316 + T 100 -14.7 -4.30793 | gap 1, opp_overlap 761275 761277, overlap 761275 TTATCTGTATTTAGG AAAAAGTGAACGCCAGACAACG GATT TGT-GTCTGGCGTTCGCTTTTA TTATTTGTTGTGTGA TERM 1117 761311 - 761275 - T 100 -12.4 -4.7497 | opp_overlap 761270 761275, overlap 761277 TGTATTTAGGAAAAA GTGAACGCCAGACA ACGGATTTG TGTCTGGCGTTCGC TTTTATTATTTGTTG TERM 1118 761275 - 761311 + T 100 -14.6 -5.08731 | gap 1, opp_overlap 761275 761277, overlap 761270 TGTATTTAGGAAAAA GTGAACGCCAGACAACG GATT TGT-GTCTGGCGTTCGC TTTTATTATTTGTTG TERM 1119 761309 - 761277 - T 91 -13.6 -2.66218 | opp_overlap 761275 761270, overlap 761275 TATTTAGGAAAAAGT GAACGCCAGACA ACGGATTTG TGTCTGGCGTTC GCTTTTATTATTTGT TERM 1120 761380 - 761392 + T 70 -7.7 -3.36273 | TACTTGCCCGTCAAC TCAGC AAC GCTGA TTCGTATTACGGCAG CLK_0031 761828 - 761355 - | putative nimA protein TERM 1121 761598 - 761585 - G 70 -8.1 -3.14344 | opp_overlap 761584 TACCGTTTGCATCAA GCAGG AGCT CCTGC ATATCATATATGGTA CLK_0032 762264 - 761851 - | hypothetical protein TERM 1122 762672 - 762647 - H 90 -10.5 -3.3568 | opp_overlap 762644 762643 762647 ACAATTATACAGTAA TACCGTCCCCT TGAT AAGAGACGGTA TTGGTATTTTTATAG TERM 1123 762781 - 762802 + H 77 -7.2 -4.5265 | AAATAAAAGTTCATT CCGGCCCT TAGTAT AGGGACGG TTTTGTAATATACTT TERM 1124 763098 - 763076 - g 80 -6.4 -4.91712 | TGGAAGGCAGAAAAA TGGATATTTT AAG AAAAAATCCA GCAGTGTATTTTCAA CLK_0033 762889 - 763383 + | pyridoxamine 5'-phosphate oxidase family protein TERM 1125 763596 - 763628 + T 100 -13.6 -3.20858 | opp_overlap 763592 AGTTAGAATATTCAT GGCAGAAAACATTC ACGGA GATTGTTTTCTGCC TTCCTAAATGTCATA CLK_0034 763705 - 763592 - | hypothetical protein CLK_0035 765451 - 764042 - | GntR family transcriptional regulator TERM 1126 765808 - 765781 - H 80 -8.4 -4.34444 | overlap 765782 TTAAGACAAGAGAAA CGCCGTAGGGCT TCAA AATCCTACGGCA AATCTCAAAAACTGA TERM 1127 765807 - 765782 - H 80 -9.7 -3.19582 | overlap 765781 TAAGACAAGAGAAAC GCCGTAGGGCT TCAA AATCCTACGGC AAATCTCAAAAACTG rhlE 766199 - 767476 + | ATP-dependent RNA helicase RhlE TERM 1128 767500 - 767523 + F 100 -6.8 -6.09196 | opp_overlap 767500 AAATATAAAAAAAGA TGATTTCTGT ATTA ACAGGAGTCA TTTTTTTATTTTGGG CLK_0037 768052 - 768540 + | putative rubrerythrin TERM 1129 768580 - 768550 - f 75 -5.4 -5.00196 | opp_overlap 768553, overlap 768551 768553 TTTTAAATAATAAAA TTACCTGCATCTTA ATT TTAGATGCAGGTTT TTAAATTATAAGAGA TERM 1130 768579 - 768551 - f 79 -8.9 -3.59033 | opp_overlap 768553, overlap 768550 768553 TTTAAATAATAAAAT TACCTGCATCTTA ATT TTAGATGCAGGTT TTTAAATTATAAGAG TERM 1131 768553 - 768577 + F 100 -11.5 -4.78149 | opp_overlap 768551 768550 768553 TAAATAATAAAATTA CCTGCATCTTA ATT TTAGATGCAGG TTTTTAAATTATAAG TERM 1132 768577 - 768553 - f 95 -11.5 -3.35275 | opp_overlap 768553, overlap 768551 768550 TAAATAATAAAATTA CCTGCATCTTA ATT TTAGATGCAGG TTTTTAAATTATAAG TERM 1133 769103 - 769087 - g 78 -6.5 -4.69415 | overlap 769089 AGGAAGAGAAAGAAA CTGCAGA ATG TCTGCTG GAAAATATGTATATG CLK_0038 768711 - 769148 + | MarR family transcriptional regulator CLK_0039 769176 - 770609 + | EmrB/QacA family drug resistance transporter TERM 1134 770641 - 770660 + T 100 -12.2 -4.51699 | opp_overlap 770641 CACATTGTTGAAAAA CCTCATGC ACTT GCATGAGG TTTTATGATGATTGT TERM 1135 770660 - 770641 - T 100 -12.2 -4.59109 | opp_overlap 770641 CACATTGTTGAAAAA CCTCATGC ACTT GCATGAGG TTTTATGATGATTGT CLK_0040 771782 - 770724 - | hypothetical protein TERM 1136 771883 - 771867 - R 86 -9.5 -3.95071 | opp_overlap 771867 771866 GAAATGGTTAAACAA CTTCTAG GTA CTAGAAG ATTTAGAAAAATTAA TERM 1137 771867 - 771883 + r 75 -9.5 -2.73159 | opp_overlap 771867, overlap 771866 GAAATGGTTAAACAA CTTCTAG GTA CTAGAAG ATTTAGAAAAATTAA CLK_0041 772894 - 772118 - | glutathione import ATP-binding protein GsiA CLK_0042 773819 - 772878 - | dipeptide transport ATP-binding protein DppD TERM 1138 773918 - 773928 + r 73 -2.6 -5.76633 | TTATTTCATATGCCA TATT ATG AATA TTTTTTTCTATGTCC CLK_0043 774722 - 773898 - | glutathione transport system permease protein GsiD CLK_0044 775674 - 774724 - | nickel transport system permease protein NikB TERM 1139 775560 - 775578 + g 100 -13.1 -2.78762 | opp_overlap 775551, overlap 775557 775555 TAGAAAGAACTTGAA GCGCCGG ATCTC CCGGCGC TAATATTCCTAATGT CLK_0045 777261 - 775675 - | periplasmic dipeptide transport protein TERM 1140 777317 - 777298 - H 100 -6.5 -6.09196 | TTGAAAATAAAAAAA TCTTCTC TTTAAG GAGAAGA CAGTTGCAGCTTAAT TERM 1141 777363 - 777336 - H 71 -6.6 -4.1822 | overlap 777346 TTGCAGCTTAATAAA TATTAATAAATA TCAA TATCTATTAATA AACAAAAAACAAACA CLK_0046 778038 - 778763 + | ABC transporter, ATP-binding protein CLK_0047 778760 - 779806 + | ABC transporter, permease protein TERM 1142 779848 - 779822 - f 95 -12.4 -3.52475 | opp_overlap 779822 TTGAACATACTATAA CACCCTTGATTA GTT TAATCAGGGGTG TTTATGATTTATAAT TERM 1143 779822 - 779848 + F 100 -14.6 -4.18303 | opp_overlap 779822 TTGAACATACTATAA CACCCTTGATTA GTT TAATCAGGGGTG TTTATGATTTATAAT CLK_0048 779922 - 780596 + | hypothetical protein TERM 1144 780845 - 780788 - T 100 -13.9 -3.16835 | opp_overlap 780803, overlap 780803 TAGAAATATAAAGCA CTCTTCCGGGTAAAATTTATATTTTAG ATTA CTTAAATATAAATTTTACCCCCAAAAG AGTGCTTTTTATTCA CLK_0049 782075 - 780885 - | hypothetical protein TERM 1145 782505 - 782516 + G 71 -3 -5.27399 | overlap 782494 AGGGGTAGGAGATAC TACT TCTA AGTA TTTTTTACTATCTTA CLK_0050 782200 - 783075 + | LysR family transcriptional regulator CLK_0051 783193 - 783504 + | hypothetical protein CLK_0052 783835 - 784503 + | putative sanA protein TERM 1146 784550 - 784581 + F 77 -6.7 -4.5954 | opp_overlap 784548 784550 784551, overlap 784551 AAGGGTAAAAATACA CTCCAGTAGTTAT TGATAT ATAGCTACTGGAA TTTTATATGGTATAA TERM 1147 784551 - 784580 + F 87 -10.2 -3.35001 | opp_overlap 784550 784548 784551, overlap 784550 AGGGTAAAAATACAC TCCAGTAGTTAT TGATAT ATAGCTACTGGA ATTTTATATGGTATA TERM 1148 786612 - 786598 - g 76 -2.8 -5.64421 | opp_overlap 786600, overlap 786600 ATCTTAAACAAAAAA TTGGTA GAA TACCTA GTTTAAGTGATTTTG CLK_0053 784632 - 787598 + | restriction/helicase domain-containing protein TERM 1149 787664 - 787722 + T 85 -10.1 -3.25823 | opp_overlap 787663 787678 787680, overlap 787664 787679 787680 TATATAATAGCATAG -GAGTTAAAGAAAAAGATGTAGCACTATT ATT ACTGGTGCTACA-CTTTTTCTTTAACTAA TTGCTCTACAGCAGG TERM 1150 787664 - 787721 + T 100 -16.1 -2.55351 | gap 1, opp_overlap 787663 787678 787680, overlap 787664 787679 787680 TATATAATAGCATAG GAGTTAAAGAAAAAGATGTAGCACTATT ATT ACTGGTGCTACA-CTTTTTCTTTAACTA ATTGCTCTACAGCAG TERM 1151 787679 - 787707 + T 81 -5.3 -5.30616 | opp_overlap 787678 787663 787680, overlap 787664 787664 787680 GAGTTAAAGAAAAAG ATGTAGCACTATT ATT ACTGGTGCTACAC TTTTTCTTTAACTAA TERM 1152 787706 - 787680 - T 73 -6.6 -4.2793 | opp_overlap 787679 787664 787664 787680, overlap 787678 787663 AGTTAAAGAAAAAGA TGTAGCACTATT ATT ACTGGTGCTACA CTTTTTCTTTAACTA TERM 1153 787680 - 787706 + T 79 -8.8 -3.77285 | opp_overlap 787680 787678 787663, overlap 787679 787664 787664 AGTTAAAGAAAAAGA TGTAGCACTATT ATT ACTGGTGCTACA CTTTTTCTTTAACTA CLK_0054 788100 - 787702 - | putative mutator mutT protein TERM 1154 788503 - 788538 + H 100 -8.5 -5.79588 | opp_overlap 788503 GCTTGCTACACAAAA CCTATTTACAGATAT TTTGTT ATGTCTGGAAATAGG TTTTTTTGCTTTTGG TERM 1155 788538 - 788503 - H 72 -6.3 -4.52589 | opp_overlap 788503 GCTTGCTACACAAAA CCTATTTACAGATAT TTTGTT ATGTCTGGAAATAGG TTTTTTTGCTTTTGG TERM 1156 788948 - 788933 - g 72 -4.8 -4.88918 | overlap 788928 TTATGGGAAATAAAA CATTTT TATA AAAATG AATATGAGGTTGGAT CLK_0055 788564 - 789400 + | BglG family transcriptional antiterminator CLK_0056 789608 - 791449 + | PTS system, beta-glucoside-specific, IIABC component TERM 1157 791747 - 791737 - g 76 -2.6 -5.51402 | ACACATGTAAAAAAA TTAT GTG ATAA GACTTTAAAATGTAG CLK_0057 791461 - 792279 + | phosphotransferase domain-containing protein TERM 1158 792472 - 792439 - f 73 -5.4 -4.77173 | gap 1, opp_overlap 792439 792460 TTCTGATAAAATAAA TCCAGTAA-CAAGCA GTAAA TGCCAGGTTACTGGA TTTTATTACGTTTAC TERM 1159 792735 - 792749 + F 75 -3.6 -5.54338 | overlap 792727 AGTGCTATTATAAAA TATAAC TTA GTTGTA TTTTTATTTTAATTA TERM 1160 793154 - 793166 + G 78 -4.1 -5.41746 | AAATAATTCATATAC TTTCC AGT GGAGA TTTTTTTGGAGAATT CLK_0058 792910 - 793620 + | Crp/FNR family transcriptional regulator TERM 1161 793647 - 793637 - f 75 -6.8 -4.54047 | opp_overlap 793637 TTATTTTAGAGAAAA GTGC TTT GCAC TTTTTTATTTTTTTG TERM 1162 793637 - 793647 + F 100 -6.8 -6.12458 | opp_overlap 793637 TTATTTTAGAGAAAA GTGC TTT GCAC TTTTTTATTTTTTTG CLK_0059 793778 - 795010 + | metallo-beta-lactamase family protein TERM 1163 795087 - 795126 + F 73 -8.8 -2.90496 | gap 1, opp_overlap 795095, overlap 795091 795092 795094 CACACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGAAGAAAA TERM 1164 795092 - 795122 + F 79 -9.8 -2.75769 | opp_overlap 795095, overlap 795091 795087 795094 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGAAG TERM 1165 795119 - 795095 - f 90 -10.1 -3.71552 | opp_overlap 795094 795092 795091 795087 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLK_0060 795302 - 796000 + | putative scdA protein TERM 1166 796328 - 796312 - g 85 -8.1 -4.55625 | opp_overlap 796311 ATGAACATGATAAAA TTCTAAG ATT CTTAGAA GATTTAGAAAAAGTG CLK_0061 796026 - 796688 + | hypothetical protein TERM 1167 796819 - 796848 + F 90 -6.6 -5.71712 | opp_overlap 796838 TTAATAGATATTATA TAATTGCATTGG GATAAA CTAATGCGATTA TTTTTTTATATAGAA CLK_0062 797031 - 797606 + | DNA-3-methyladenine glycosylase 1 TERM 1168 799468 - 799456 - g 71 -7.7 -3.39028 | overlap 799454 CATAACTTCTAAATA TGGTG CAT CACCA AAAGCATTTTTTATT gltS 798377 - 799561 + | sodium/glutamate symporter TERM 1169 799815 - 799783 - f 90 -7.9 -4.97405 | opp_overlap 799786, overlap 799786 ATTTATAAAAATAAA GAAGAGTATCTTC CGTGGTT GAAGATACTCTTT TAGTGCTATAAAATA TERM 1170 799812 - 799786 - f 93 -9.6 -4.56117 | opp_overlap 799786, overlap 799783 TATAAAAATAAAGAA GAGTATCTTC CGTGGTT GAAGATACTC TTTTAGTGCTATAAA TERM 1171 799786 - 799812 + F 89 -9.6 -4.33274 | opp_overlap 799786 799783 TATAAAAATAAAGAA GAGTATCTTC CGTGGTT GAAGATACTC TTTTAGTGCTATAAA CLK_0064 799833 - 800288 + | hypothetical protein TERM 1172 800546 - 800521 - T 83 -3.3 -6.02919 | TTATAAATAAAAAAA TAAAACCGCCA TTAT TGACTGTCTTA TTTTTTATAATGTAT CLK_0065 800983 - 800564 - | hypothetical protein TERM 1173 801630 - 801655 + H 86 -5.5 -5.7827 | TTGTATAATTTGTGA CTCTTTAGCTA TTTG TAGTTAGGGAG TTTTTTATTTGTGTT TERM 1174 801870 - 801851 - g 81 -7.2 -4.54553 | GATAAACAGAACAAA GATAAGGT TGAA ACCTCATC ACAAAAAGGGGACAA CLK_0066 801728 - 802786 + | putative iron ABC transporter, iron-binding protein CLK_0067 802856 - 803881 + | Fe uptake system integral membrane protein CLK_0068 803888 - 804646 + | iron chelate ABC transporter ATP-binding protein CLK_0069 804667 - 804990 + | CGGC domain-containing protein TERM 1175 805244 - 805212 - f 93 -9.3 -4.72007 | opp_overlap 805215 805243, overlap 805215 GTTTATTAAAATAAA GAAGAGTATCTTCAA AAA TAGAAGATACTCTTT TTATGCGTTATAAAA TERM 1176 805215 - 805241 + F 100 -11 -4.93318 | opp_overlap 805212 805215 TATTAAAATAAAGAA GAGTATCTTCAA AAA TAGAAGATACTC TTTTTATGCGTTATA TERM 1177 805241 - 805215 - f 100 -11 -4.45807 | opp_overlap 805215, overlap 805212 TATTAAAATAAAGAA GAGTATCTTCAA AAA TAGAAGATACTC TTTTTATGCGTTATA CLK_0070 805371 - 805838 + | hypothetical protein CLK_0071 805845 - 807194 + | hypothetical protein TERM 1178 807400 - 807365 - T 95 -10.8 -4.37198 | opp_overlap 807365, overlap 807369 AATTTAAACTGAAAA TAAAGTTAAACTCA ATAAAACA TGAGTTTAACTTTA TTTTTTACATTAGAT TERM 1179 807365 - 807400 + T 100 -10.8 -5.16572 | opp_overlap 807365 807369 AATTTAAACTGAAAA TAAAGTTAAACTCA ATAAAACA TGAGTTTAACTTTA TTTTTTACATTAGAT TERM 1180 807396 - 807369 - T 81 -7.2 -4.74598 | opp_overlap 807365, overlap 807365 TAAACTGAAAATAAA GTTAAACTCA ATAAAACA TGAGTTTAAC TTTATTTTTTACATT CLK_0072 807634 - 807431 - | hypothetical protein TERM 1181 808659 - 808641 - g 71 -3.2 -5.31275 | CTTTATGAGAAAAAA CATAAAAT ATT ATTTTGTG GTGATCATATTTTGG CLK_0073 808101 - 809087 + | metallo-beta-lactamase family protein TERM 1182 809273 - 809215 - f 80 -9.3 -3.27704 | gap 1, opp_overlap 809215 809217 809219, overlap 809192 ATCTTTTAAATTTAA CATAGATACAAACCCCGCAATT-CAT GCATGTTA ATGCAATTGAATGGTTTGTATCTATG TTGGCTAAGATAAGT TERM 1183 809311 - 809333 + F 100 -15 -4.92239 | opp_overlap 809311 TAATATATATAGAAA GCCACATAGA TTA TCTATGTGGC TTTTTCGATTTTTAG TERM 1184 809333 - 809311 - f 100 -15 -4.2109 | opp_overlap 809311 TAATATATATAGAAA GCCACATAGA TTA TCTATGTGGC TTTTTCGATTTTTAG TERM 1185 809376 - 809394 + F 100 -8.9 -5.64274 | opp_overlap 809375 809376 TGTATTTTCTAAAAG CCACATG GGTAA CATGTGG TTTTTTTGTACCTAA TERM 1186 809394 - 809376 - f 74 -8.9 -3.05597 | opp_overlap 809376, overlap 809375 TGTATTTTCTAAAAG CCACATG GGTAA CATGTGG TTTTTTTGTACCTAA CLK_0074 809429 - 810322 + | ABC transporter, permease protein CLK_0075 810285 - 811040 + | ABC transporter, ATP-binding protein CLK_0076 811071 - 812042 + | putative ABC transporter, substrate-binding protein TERM 1187 812058 - 812047 - f 76 -2.2 -5.98675 | overlap 812051 TAGAAAAATAAAAAA CAAG CATC CCTG GGGTATGTAAATAAA TERM 1188 812256 - 812224 - f 73 -8.7 -2.82253 | opp_overlap 812224, overlap 812223 812221 812226 TATTAATATAAAGAG GATGTTTCAAAATAA AAT CTATTTTGAAATATC TTTTTTTATATATAC TERM 1189 812224 - 812256 + F 100 -10.2 -5.76633 | opp_overlap 812224 812223 812221 812226 TATTAATATAAAGAG GATGTTTCAAAATA AAATC TATTTTGAAATATC TTTTTTTATATATAC TERM 1190 812379 - 812410 + F 100 -14.6 -3.73936 | opp_overlap 812373 TAAATAGAGTTCTTG GCTTTAGAGGAAGT TCTT ACTTCCACTAAAGC TTATTAATAGAATTT TERM 1191 812805 - 812793 - g 71 -7.7 -3.3878 | overlap 812792 AGATATGCCAAAAAT CTCAG CGG CTGAG TGGGAAGTAATGAAA blaI 812773 - 813153 + | penicillinase repressor TERM 1192 813780 - 813745 - g 77 -5.6 -4.91473 | opp_overlap 813749, overlap 813749 GAATGCAAAAAGAAA TTAAGCATAAATAGAA GCAT TCCTATTTATGCTTGT GATGACTTTAAAGCT TERM 1193 813776 - 813749 - g 91 -10.8 -3.86874 | opp_overlap 813749, overlap 813745 GCAAAAAGAAATTAA GCATAAATAGAA GCAT TCCTATTTATGC TTGTGATGACTTTAA TERM 1194 813749 - 813776 + G 76 -8.6 -3.45776 | opp_overlap 813749 813745 GCAAAAAGAAATTAA GCATAAATAGAA GCAT TCCTATTTATGC TTGTGATGACTTTAA TERM 1195 814198 - 814188 - g 78 -4 -5.47914 | AAAAATGATAAAAAA CTTT AAA AAAG GATCTTATAGAATGT CLK_0078 813193 - 815406 + | peptidase, M56 family protein TERM 1196 815473 - 815418 - T 93 -13 -3.05159 | opp_overlap 815428, overlap 815428 TTAGATTAAATTATA TGTTAAAAAAGGACATCGATATAGTA AGAT TACTATACTGATGTCCTTTTCCAAAA AGAAAAATTTAATTT TERM 1197 815463 - 815428 - T 100 -12.8 -5.07567 | opp_overlap 815428, overlap 815418 TTATATGTTAAAAAA GGACATCGATATAGTA AGAT TACTATACTGATGTCC TTTTCCAAAAAGAAA TERM 1198 815428 - 815463 + T 100 -12.8 -4.07568 | opp_overlap 815428 815418 TTATATGTTAAAAAA GGACATCGATATAGTA AGAT TACTATACTGATGTCC TTTTCCAAAAAGAAA CLK_0079 817036 - 815615 - | hypothetical protein CLK_0080 817596 - 817033 - | sigma-70 family RNA polymerase sigma factor CLK_0081 817845 - 817976 + | small GTP-binding protein TERM 1199 818093 - 818113 + G 70 -8.5 -3.17608 | opp_overlap 818091 818090, overlap 818091 CATATATAGAAATTC TTATGAAAA GTT TTTTCATAA TATTGATAAGTATTT TERM 1200 818670 - 818659 - g 71 -3 -5.17744 | ACAGATTAATAAAAA CTTT TCCT AAAG TAAAAACAATAATGT CLK_0082 818037 - 818975 + | dihydrouridine synthase family protein greA 819132 - 819596 + | transcription elongation factor GreA TERM 1201 819712 - 819673 - f 75 -8.9 -3.2789 | gap 1, opp_overlap 819673, overlap 819671 819669 ATAATGTCAAACAGA GGGATTGTTCTTAGATTT AAATA AAAT-TAAGAACAGTCCC TTTATTTTGGAATAA TERM 1202 819673 - 819712 + F 100 -12.4 -4.67048 | opp_overlap 819671 819669 819673 ATAATGTCAAACAGA GGGATTGTTCTTAGATTT AAAT AAAATTAAGAACAGTCCC TTTATTTTGGAATAA CLK_0084 819764 - 820516 + | hypothetical protein TERM 1203 820733 - 820759 + F 75 -7.3 -4.31329 | opp_overlap 820733, overlap 820725 CAAGTATTCCTAAGA GCATTCACGCT TATAT GGTGTGAGTGC TTTTAAAATTTTTAG CLK_0085 820756 - 820878 + | hypothetical protein TERM 1204 820965 - 821004 + F 76 -4.5 -5.42259 | gap 1, opp_overlap 820967, overlap 820967 821003 AACTTAGGTTATAAT AAGCTCAATCATT-AAGA TTTTT TCATAAATGATTGAGCTA TTTTTTTGAAAATAA TERM 1205 821002 - 820967 - f 70 -7.1 -3.80733 | gap 1, opp_overlap 820965 820967 CTTAGGTTATAATAA GCTCAATCATT-AAGA TTTTT TCATAAATGATTGAGC TATTTTTTTGAAAAT TERM 1206 820967 - 821002 + F 75 -7.1 -4.35085 | gap 1, opp_overlap 820967, overlap 820965 CTTAGGTTATAATAA GCTCAATCATT-AAGA TTTTT TCATAAATGATTGAGC TATTTTTTTGAAAAT CLK_0086 821070 - 821891 + | AraC family transcriptional regulator TERM 1207 822030 - 821978 - f 72 -8.1 -3.28866 | opp_overlap 821983, overlap 821983 821987 TCATATTTAAATAGA TAAAAGAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTTTCTTTTT TGTTTAAACTATTTT TERM 1208 821983 - 822025 + F 100 -14.6 -5.64421 | opp_overlap 821978 821983 821987 TTTAAATAGATAAAA GAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTTTC TTTTTTGTTTAAACT TERM 1209 822025 - 821983 - f 86 -8 -4.74013 | opp_overlap 821983, overlap 821978 821987 TTTAAATAGATAAAA GAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTTTC TTTTTTGTTTAAACT CLK_0087 822442 - 823431 + | putative ferrichrome ABC transporter, ferrichrome-binding protein TERM 1210 823674 - 823690 + G 83 -7.9 -4.67692 | opp_overlap 823667, overlap 823647 823668 823686 GAGAATATCCCCTTA GCTTCCC TAT GGGATGC TTTATTTCATTTTAA TERM 1211 823947 - 823963 + G 70 -8.7 -2.64962 | overlap 823946 TTTTCTTTTTTAGGA GCAGCTT TTG GAGCTGC ATTAGTTAATGGTAT fhuB 823527 - 824567 + | ferrichrome ABC transporter, permease protein FhuB fhuG 824564 - 825607 + | ferrichrome ABC transporter, permease protein FhuG TERM 1212 825663 - 825649 - f 78 -4.4 -5.48787 | opp_overlap 825649 ATAATATACAAAAAA TTTAAT AGT ATTAAA TGCATTTGGAGTAAA CLK_0090 825783 - 826568 + | ferrichrome transport ATP-binding protein FhuC nifH 826585 - 827334 + | nitrogenase iron protein TERM 1213 827411 - 827384 - g 74 -7 -4.21607 | opp_overlap 827383, overlap 827361 TTCAGTTAAGACAAA TGCTGGAGTAAA GTTT TTGACTCCTGCA GCTTTTCCGGGAAAT CLK_0092 827337 - 828605 + | hypothetical protein CLK_0093 828645 - 829883 + | hypothetical protein TERM 1214 829973 - 829996 + F 100 -9.7 -5.06505 | opp_overlap 829970 829973 TTAATTGAAATATTA GGACTTACT TTAAAT AGTAAGTCC TTTTTATGTGTAATT TERM 1215 829996 - 829973 - f 76 -9.7 -2.87581 | opp_overlap 829973, overlap 829970 TTAATTGAAATATTA GGACTTACT TTAAAT AGTAAGTCC TTTTTATGTGTAATT CLK_0094 830207 - 832219 + | methyl-accepting chemotaxis protein TERM 1216 832409 - 832370 - f 100 -13.9 -5.22039 | opp_overlap 832370 832374 TTTAAAGCTAAAAAA CAAAGGGTATCTCAA TGGTATGTTC TTGAGATACCCTTTG TTTTTGTAAGCATTA TERM 1217 832370 - 832409 + F 100 -13.9 -4.8543 | gap 1, opp_overlap 832370, overlap 832374 TTTAAAGCTAAAAAA CAAAGGGTATCTCAATGG TATGT TC-TTGAGATACCCTTTG TTTTTGTAAGCATTA TERM 1218 832374 - 832405 + F 100 -8.9 -4.96501 | gap 1, opp_overlap 832370, overlap 832370 AAGCTAAAAAACAAA GGGTATCTCAATGG TATGT TC-TTGAGATACCC TTTGTTTTTGTAAGC CLK_0095 832481 - 832720 + | hypothetical protein TERM 1219 832752 - 832780 + T 73 -5.4 -4.87052 | gap 1, opp_overlap 832752, overlap 832747 GAAATAAAATAAAAA CAGTGCCA-GATT ATAT AATGATGGCACTG TTTTATTAATTTATA TERM 1220 832780 - 832752 - T 86 -5.4 -5.67711 | gap 1, opp_overlap 832752 832747 GAAATAAAATAAAAA CAGTGCCA-GATT ATAT AATGATGGCACTG TTTTATTAATTTATA CLK_0096 834209 - 832800 - | hypothetical protein gcvT 834787 - 835899 + | glycine cleavage system T protein gcvH 836024 - 836416 + | glycine cleavage system H protein TERM 1221 837607 - 837593 - g 74 -7.2 -4.03204 | opp_overlap 837586 837593, overlap 837586 TAGTAAAGGGAGAAA TTTCAC CTT GTGAAA TTAATGATAAATTAT gcvPA 836419 - 837759 + | glycine cleavage system P protein, subunit 1 TERM 1222 839109 - 839095 - g 82 -4.3 -5.52986 | overlap 839098 ATGCTATGAAAAAAA TAGCT GTAGA AGCTA AAGAAAATCCAGAAC gcvPB 837759 - 839213 + | glycine cleavage system P protein, subunit 2 TERM 1223 840521 - 840508 - g 76 -3.9 -5.40625 | AGAGTATATAAAAAA CAAAT TCCT ATTTG GAGCTAATGGAAAAG lpdA 839402 - 840790 + | dihydrolipoyl dehydrogenase CLK_0102 840807 - 841784 + | putative lipoate-protein ligase A TERM 1224 841802 - 841812 + F 80 -2.6 -6.09888 | opp_overlap 841802 TAATTGGTACATTAA TAAT ATG ATTA TTTTTTTTGTTGGAC TERM 1225 841917 - 841966 + F 100 -14.1 -5.22943 | gap 1, opp_overlap 841917 TAAAAAGATATAAAA GAATCTATTTTTAGAGTGGTTAGC GTT GTTAACTACT-TGAAAATAGATTC TTTTTTACATTTAAT TERM 1226 841966 - 841917 - f 86 -7.5 -4.82548 | gap 1, opp_overlap 841917 TAAAAAGATATAAAA GAATCTATTTTTAGAGTGGTTAGC GTT GTTAACTACT-TGAAAATAGATTC TTTTTTACATTTAAT CLK_0103 842278 - 842535 + | hypothetical protein TERM 1227 842543 - 842569 + F 100 -13.2 -5.08824 | opp_overlap 842537 842543 ATAAATAAATTTAAA GAGATTTTACCA TTT TGGTAGAATCTC TTTTTTAGATAGGAA TERM 1228 842569 - 842543 - f 100 -11 -3.97446 | opp_overlap 842543, overlap 842537 ATAAATAAATTTAAA GAGATTTTACCA TTT TGGTAGAATCTC TTTTTTAGATAGGAA CLK_0104 842928 - 843494 + | acetyltransferase TERM 1229 843625 - 843636 + F 70 -3 -5.61596 | CTTGCTGTGTAAGAT GTAT GAAT ATAC TTTTTTTATAAAGCT CLK_0105 843881 - 844429 + | transposase and inactivated derivatives TERM 1230 845029 - 845015 - g 72 -8.6 -2.89564 | overlap 845017 CTCTTACCGTATATA TACGCA GAC TGCGTA CAAAAATCGAAGATA CLK_0106 844426 - 845124 + | DNA-binding response regulator TERM 1231 845341 - 845330 - g 70 -5.8 -4.24963 | TATAATCATGGAAAA TGCG GTAA CGCA AATCAAAGAATATAT CLK_0107 845121 - 846158 + | sensor histidine kinase CLK_0108 846231 - 846914 + | ABC transporter, ATP-binding protein CLK_0109 847281 - 846919 - | hypothetical protein CLK_0110 847232 - 848713 + | ABC transporter, permease protein TERM 1232 848809 - 848797 - fH 95 -5.5 -6.09196 | opp_overlap 848767 848764 GGCAAAAGAAAAAAA GCCGT CGT ACAGC AGACATATCTTCATG TERM 1233 849300 - 849272 - fH 100 -11.9 -4.21319 | opp_overlap 849262 849275, overlap 849262 849275 ACGAAGTTCAATAAA GAACCTTTCCTCA AGT TGAGAAAAAGTTC TTAGAGGAAAATCAG TERM 1234 849297 - 849275 - fH 78 -7.8 -4.2204 | opp_overlap 849275, overlap 849272 AAGTTCAATAAAGAA CCTTTCCTCA AGT TGAGAAAAAG TTCTTAGAGGAAAAT CLK_0111 849467 - 849955 + | MarR family transcriptional regulator TERM 1235 850237 - 850226 - g 70 -5.8 -4.22214 | opp_overlap 850226 AGTCAGCGAAAAGAA GGCA ATAC TGCC TTTATTGTGAACAAA TERM 1236 850226 - 850237 + G 70 -5.8 -4.30719 | opp_overlap 850226 AGTCAGCGAAAAGAA GGCA ATAC TGCC TTTATTGTGAACAAA CLK_0112 850187 - 850774 + | putative NADPH-dependent FMN reductase CLK_0113 850859 - 850993 + | hypothetical protein CLK_0114 851267 - 852103 + | AraC family transcriptional regulator TERM 1237 852170 - 852151 - f 78 -8 -4.30576 | CCTTTATTATGAAAA TAGTGATA AAGC TATCACTA AATAAGATTAGAAAA CLK_0115 852197 - 852745 + | hypothetical protein CLK_0116 852929 - 853093 + | hypothetical protein CLK_0117 853095 - 853664 + | hypothetical protein TERM 1238 853691 - 853658 - T 95 -11.3 -3.65522 | opp_overlap 853658, overlap 853661 TATGGATTTGAATAA TAAGTAGTAGAAGTT GAGT AAATTCTACTACTTA TTTTTTGTTGAAAAT TERM 1239 853658 - 853691 + T 100 -11.3 -5.45652 | opp_overlap 853658 853661 TATGGATTTGAATAA TAAGTAGTAGAAGTT GAGT AAATTCTACTACTTA TTTTTTGTTGAAAAT TERM 1240 853688 - 853661 - T 78 -8.6 -3.96068 | opp_overlap 853658, overlap 853658 GGATTTGAATAATAA GTAGTAGAAGTT GAGT AAATTCTACTAC TTATTTTTTGTTGAA TERM 1241 853879 - 853902 + T 88 -8.2 -4.81814 | opp_overlap 853882, overlap 853882 AATAAGATAAATAGA AAACTCCTTC TTTG GAAGGAGTTA TTTTATTGTGATAAT TERM 1242 853882 - 853899 + T 100 -9.9 -4.5028 | opp_overlap 853882, overlap 853879 AAGATAAATAGAAAA CTCCTTC TTTG GAAGGAG TTATTTTATTGTGAT TERM 1243 853899 - 853882 - T 100 -9.9 -4.88684 | opp_overlap 853879 853882 AAGATAAATAGAAAA CTCCTTC TTTG GAAGGAG TTATTTTATTGTGAT CLK_0118 854777 - 853905 - | hypothetical protein TERM 1244 854361 - 854385 + g 72 -4.3 -5.01676 | overlap 854363 AATAGGTTTTTCTTC TTCATCTGTTT TTG GAACAGGTGTA TTATTTTTTTTAGTT TERM 1245 854363 - 854383 + g 72 -6.9 -4.07951 | overlap 854361 TAGGTTTTTCTTCTT CATCTGTTT TTG GAACAGGTG TATTATTTTTTTTAG TERM 1246 854804 - 854829 + H 75 -9.3 -2.74563 | opp_overlap 854797 854806, overlap 854806 TCCGATAATTCTGAA TATTATGATAT CATT ATATCATAATA TGCTTAACATGTAAA CLK_0119 856022 - 856666 + | transcriptional regulator, MerR family protein TERM 1247 856698 - 856688 - g 70 -4 -5.00412 | opp_overlap 856688 AAATAGAATGAAAAA TAGT ATA ACTA TATTAAATGATAAAA CLK_0120 856680 - 857255 + | putative rhoptry protein TERM 1248 857389 - 857353 - f 75 -8.2 -3.5275 | opp_overlap 857354 857385, overlap 857354 857360 AAATTATATAAGTAA GGAAGAAGGAGTAT TTATAAAGG ATACTCCTTCTTCT TTTATGTTAAGAAGT TERM 1249 857388 - 857354 - f 86 -11.7 -2.70565 | opp_overlap 857354 857385, overlap 857353 857360 AATTATATAAGTAAG GAAGAAGGAGTAT TTATAAAGG ATACTCCTTCTTC TTTTATGTTAAGAAG TERM 1250 857354 - 857388 + F 100 -13.1 -4.66537 | opp_overlap 857354 857353 857360, overlap 857385 AATTATATAAGTAAG GAAGAAGGAGTATTT ATAAA GGATACTCCTTCTTC TTTTATGTTAAGAAG CLK_0121 857536 - 858792 + | hypothetical protein CLK_0122 858826 - 859308 + | hypothetical protein CLK_0123 859354 - 860136 + | YebB CLK_0124 860499 - 861332 + | hypothetical protein TERM 1251 861461 - 861495 + F 78 -6.6 -4.82901 | opp_overlap 861483, overlap 861493 AATAAGTAGAGTTCA TAGCTTTAGGTATT GATATGA ATTACCTAAGGCTA TTTTTATAGGAGAAA TERM 1252 861524 - 861483 - f 72 -8.3 -3.28119 | opp_overlap 861461 861493 AGGTATTGATATGAA TTACCTAAGGCTATTTT TATAGGAG AAAATAGTCTTAGGCAA GTAAGTAGGTAAAGT CLK_0125 861638 - 862402 + | MerR family transcriptional regulator TERM 1253 862400 - 862425 + F 80 -8.5 -4.30995 | gap 1, opp_overlap 862405 ATAAACTCTACACTT TAACACCAT-AC TTT GTGATGGTGTTA TTCTTTTATCAAAAG CLK_0126 862454 - 863185 + | ABC transporter ATP-binding protein CLK_0127 863172 - 863915 + | putative drug resistance ABC-2 type transporter, permease protein TERM 1254 864003 - 864048 + F 100 -18.7 -4.66833 | opp_overlap 864003 GAATAAATGTAAAAA CCTCATTTAGATAAGATATGG TTCA CTGTATCTTATCTAAATGGGG TTTTTAGCCTTAGAC TERM 1255 864048 - 864003 - f 100 -12.1 -4.86939 | opp_overlap 864003 GAATAAATGTAAAAA CCTCATTTAGATAAGATATGG TTCA CTGTATCTTATCTAAATGGGG TTTTTAGCCTTAGAC CLK_0128 864609 - 866000 + | hypothetical protein TERM 1256 866646 - 866660 + G 81 -6.4 -5.03994 | CAGTGCAAATTACGG CTTCCA ATA TGGGAG TTTTTCTATATACAG CLK_0129 866270 - 866722 + | acetyltransferase CLK_0130 867122 - 867238 + | hypothetical protein CLK_0131 867294 - 868259 + | AraC family transcriptional regulator TERM 1257 868636 - 868617 - T 76 -9.4 -2.75957 | opp_overlap 868617 868619, overlap 868619 868633 TAGTAATTTGAAGTA TAGGTTGT TTAT ACAACCTA TATTAGGAGATATGT TERM 1258 868617 - 868636 + T 78 -9.4 -3.0395 | opp_overlap 868617 868619 868633, overlap 868619 TAGTAATTTGAAGTA TAGGTTGT TTAT ACAACCTA TATTAGGAGATATGT TERM 1259 868686 - 868647 - T 76 -9.6 -2.84812 | opp_overlap 868643 868642, overlap 868649 ACCTATATTAGGAGA TATGTAGGTAAATTTGTA TTTA CATAAATCTACCTACATA CCCCGTTTAGAACAA CLK_0132 869731 - 868733 - | 3-oxoacyl-[acyl-carrier-protein] synthase III-like protein TERM 1260 869683 - 869670 - G 70 -3.9 -5.03747 | AAATGCTTCAAAAAA TATTC GTTA GAATA GCTTGTTTTAGGATG CLK_0133 869980 - 871446 + | methyl-accepting chemotaxis protein TERM 1261 871514 - 871462 - f 100 -11.4 -4.31766 | gap 1, opp_overlap 871463 871464 871466 871474, overlap 871464 871467 AGTAGATAATATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTGAAGCTTAGAAATC-G TTATCCAGGGACGTA TERM 1262 871463 - 871514 + F 100 -13.8 -3.28924 | opp_overlap 871462 871464 871467, overlap 871464 871466 871474 GTAGATAATATAAAC AGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTGAAGCTTAGAAATCG TTATCCAGGGACGTA TERM 1263 871464 - 871513 + F 100 -17.3 -2.57211 | opp_overlap 871462 871464 871467, overlap 871463 871466 871474 TAGATAATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTGAAGCTTAGAAATC GTTATCCAGGGACGT TERM 1264 871513 - 871464 - f 100 -15.1 -3.75093 | opp_overlap 871464 871463 871466 871474, overlap 871462 871467 TAGATAATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTGAAGCTTAGAAATC GTTATCCAGGGACGT TERM 1265 871466 - 871511 + F 100 -14.1 -2.82623 | opp_overlap 871464 871462 871467, overlap 871464 871463 871474 GATAATATAAACAGA GTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTGAAGCTTAGAAA TCGTTATCCAGGGAC TERM 1266 871510 - 871467 - f 100 -15.4 -2.65284 | opp_overlap 871466 871464 871463 871474, overlap 871464 871462 ATAATATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTGAAGCTTAGAA ATCGTTATCCAGGGA TERM 1267 871531 - 871575 + F 80 -9.6 -3.21747 | gap 2, opp_overlap 871531 TATCCAGGGACGTAA CCACTCT-TTACTCTCA-CTTT GAA AAAGATGGGAGTATTAGAGTGG TTAGTCATCGGATAA TERM 1268 871594 - 871623 + F 79 -3.6 -5.71712 | overlap 871596 GTCATCGGATAAAAA TATGGTTATTGC AAATTA GCAGTGACCATC TTTTTTTGTATAGCA TERM 1269 871596 - 871621 + F 72 -6.2 -4.50122 | overlap 871594 CATCGGATAAAAATA TGGTTATTGC AAATTA GCAGTGACCA TCTTTTTTTGTATAG TERM 1270 871670 - 871705 + F 70 -2.8 -5.47218 | opp_overlap 871670 871671 871675, overlap 871671 871675 TGTTAAAAGATAAGA CTAATGGATAACTA TCCTTATT TAGTTATCTATTAA TTTTTTTAGGTGGGA CLK_0134 872216 - 872506 + | hypothetical protein TERM 1271 872509 - 872556 + F 83 -7.2 -4.91511 | opp_overlap 872514, overlap 872514 AATTTATGGTTAATA TAAAAGGCATGTTTTTCACATT TATT ACTATGAAAAACATGCCTTAAA TTTTTATACTAAACT TERM 1272 872514 - 872551 + F 95 -11.5 -3.4968 | opp_overlap 872514, overlap 872509 ATGGTTAATATAAAA GGCATGTTTTTCACATT TATT ACTATGAAAAACATGCC TTAAATTTTTATACT TERM 1273 872551 - 872514 - f 100 -13.7 -4.66938 | opp_overlap 872514 872509 ATGGTTAATATAAAA GGCATGTTTTTCACATT TATT ACTATGAAAAACATGCC TTAAATTTTTATACT CLK_0135 872705 - 874258 + | ABC transporter, ATP-binding protein CLK_0136 874357 - 874491 + | hypothetical protein TERM 1274 874509 - 874470 - f 75 -3.7 -5.46657 | opp_overlap 874473 874479, overlap 874473 874479 TACTTTAATAAAAAA TTATGAAAACAGTGACA TATAGG TGTCACTGTTTTTATGT TAGAATGTTTTTAAA TERM 1275 874506 - 874473 - f 89 -9.8 -3.5087 | opp_overlap 874473 874479, overlap 874470 874479 TTTAATAAAAAATTA TGAAAACAGTGACA TATAGG TGTCACTGTTTTTA TGTTAGAATGTTTTT TERM 1276 874473 - 874506 + F 95 -12.7 -3.12892 | opp_overlap 874473 874470 874479, overlap 874479 TTTAATAAAAAATTA TGAAAACAGTGACAT ATAG GTGTCACTGTTTTTA TGTTAGAATGTTTTT TERM 1277 874500 - 874479 - f 86 -8.8 -4.46432 | opp_overlap 874473 874479, overlap 874473 874470 AAAAAATTATGAAAA CAGTGACA TATAGG TGTCACTG TTTTTATGTTAGAAT TERM 1278 874479 - 874500 + F 100 -9.5 -5.09762 | opp_overlap 874479 874473 874470, overlap 874473 AAAAAATTATGAAAA CAGTGACAT ATAG GTGTCACTG TTTTTATGTTAGAAT CLK_0137 874593 - 875165 + | ThiJ/PfpI family intracellular protease CLK_0138 875442 - 875558 + | hypothetical protein TERM 1279 875592 - 875562 - f 75 -5.8 -4.96848 | opp_overlap 875562 875566, overlap 875566 CTGTTTACATAAAAA TAAATTATAAAA TGGAATC TTTTATAATTTA TTGCTGAAATTTATT CLK_0139 875757 - 876227 + | hypothetical protein TERM 1280 876285 - 876237 - T 79 -8.4 -4.06964 | gap 1, opp_overlap 876235 876238 876247, overlap 876245 876246 ATATAGATAAGTAAA TTTAACAACGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGC-TTAGGAAA TGTTTATACAGGGGC TERM 1281 876278 - 876245 - T 100 -14.7 -3.79506 | opp_overlap 876238 876235 876247, overlap 876237 876246 AAGTAAATTTAACAA CGCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGCT TAGGAAATGTTTATA TERM 1282 876277 - 876246 - T 100 -18.2 -2.86619 | opp_overlap 876238 876235 876247, overlap 876245 876237 AGTAAATTTAACAAC GCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGC TTAGGAAATGTTTAT CLK_0140 877338 - 876430 - | cysteine synthase family protein luxS 877774 - 877322 - | autoinducer-2 production protein LuxS metC 878918 - 877776 - | cystathionine beta-lyase TERM 1283 878969 - 879013 + r 100 -13.4 -5.10765 | ATTTCTTACTTGTTT TTTTAGATTGAAATAACT TTATTGTTC AGTTATTTCAATCTAAAA TTTTATTATTTATTT CLK_0143 879826 - 879200 - | SAM-dependent methyltransferase TERM 1284 879686 - 879641 - G 70 -5 -4.55689 | ATTATCTATAGAAAA TACTATGCT-TGCTTCATTTGC CACC GCTAATGAAACAAAGC-CAGTA CCACAGCCTAAATCA TERM 1285 879972 - 880000 + H 75 -8.9 -3.17571 | opp_overlap 879972 GCTAATAATAAAAAA CCTCTACCTCTAA ATT TTAGAGGCAGAAG TTAACTTCCGCGATT TERM 1286 880000 - 879972 - H 100 -13.3 -5.64873 | opp_overlap 879972 GCTAATAATAAAAAA CCTCTACCTCTAA ATT TTAGAGGCAGAAG TTAACTTCCGCGATT TERM 1287 880463 - 880449 - H 70 -4.4 -5.03945 | opp_overlap 880449 TAAGAATTAGAAAAA TAAATA TTT TATTTA ATATAGAGAATAAAA CLK_0144 880735 - 882588 + | glycosy hydrolase family protein CLK_0145 882954 - 883193 + | mercuric transport protein periplasmic component TERM 1288 883258 - 883213 - T 100 -19.5 -3.55582 | gap 1, opp_overlap 883213 ATAAGATTTATAGAA GTGCACTCAAAATGCTAG-TTA TTT TAATCTAACATTTTGAGTGCAC TTCATTAACACAAAC TERM 1289 883213 - 883258 + T 100 -17.3 -3.33696 | gap 1, opp_overlap 883213 ATAAGATTTATAGAA GTGCACTCAAAATGCTAG-TTA TTT TAATCTAACATTTTGAGTGCAC TTCATTAACACAAAC CLK_0146 883633 - 883301 - | hypothetical protein TERM 1290 883508 - 883532 + g 73 -8.9 -3.07192 | opp_overlap 883505 883508, overlap 883505 GCCTTCATAAAATAA TTTATTTAAAA TTA TTTTAAATAAA TCTGTTGAACCAATT TERM 1291 883532 - 883508 - G 84 -8.9 -4.30995 | opp_overlap 883505 883508, overlap 883505 GCCTTCATAAAATAA TTTATTTAAAA TTA TTTTAAATAAA TCTGTTGAACCAATT CLK_0147 884221 - 883721 - | hypothetical protein TERM 1292 883792 - 883770 - G 72 -8.6 -3.02947 | opp_overlap 883770 TATTTAGGATATACA TTTAAAAGAG TAT CCCTTTTAAA TAATTCAAAGTCCCT TERM 1293 884620 - 884654 + r 73 -4.4 -5.15969 | opp_overlap 884624, overlap 884624 TAATAAAGATATAAA AAAAGATACCTGTG TGAAAAT CACAAGTATCTTTA TTTTTTGCATTAAAA TERM 1294 884624 - 884650 + r 72 -5.2 -5.08015 | opp_overlap 884624, overlap 884620 AAAGATATAAAAAAA GATACCTGTG TGAAAAT CACAAGTATC TTTATTTTTTGCATT TERM 1295 884650 - 884624 - R 95 -7.4 -5.82281 | opp_overlap 884620 884624 AAAGATATAAAAAAA GATACCTGTG TGAAAAT CACAAGTATC TTTATTTTTTGCATT CLK_0148 885363 - 884755 - | hypothetical protein CLK_0149 885928 - 885491 - | hypothetical protein TERM 1296 885730 - 885714 - G 71 -8.7 -2.76434 | opp_overlap 885714, overlap 885713 ATTAAAAACATTAAG CTTGCGA TTT CCGCAAG TTCTGCGGCCTTAGC TERM 1297 886067 - 886112 + r 73 -6.5 -4.20368 | gap 1, opp_overlap 886072, overlap 886069 886070 886072 AAGGTTAATAAAAAA TAA-AAGAGTGTTTCAAAATAA ATT TAATTTTGAGACACTCTACTTA TTTCTATTGGGGTAA TERM 1298 886069 - 886109 + r 70 -6.3 -4.21773 | opp_overlap 886072, overlap 886067 886070 886072 GGTTAATAAAAAATA AAAGAGTGTTTCAAAATAA ATT TAATTTTGAGACACTCTAC TTATTTCTATTGGGG TERM 1299 886070 - 886108 + r 85 -9.8 -3.12341 | opp_overlap 886072, overlap 886069 886067 886072 GTTAATAAAAAATAA AAGAGTGTTTCAAAATAA ATT TAATTTTGAGACACTCTA CTTATTTCTATTGGG TERM 1300 886072 - 886106 + r 90 -12.4 -3.10929 | opp_overlap 886072, overlap 886070 886069 886067 TAATAAAAAATAAAA GAGTGTTTCAAAATAA ATT TAATTTTGAGACACTC TACTTATTTCTATTG TERM 1301 886106 - 886072 - R 100 -10.2 -5.55001 | opp_overlap 886070 886069 886067 886072 TAATAAAAAATAAAA GAGTGTTTCAAAATAA ATT TAATTTTGAGACACTC TACTTATTTCTATTG CLK_0150 886732 - 886310 - | putative DNA-binding protein CLK_0151 886876 - 887076 + | DNA-binding protein TERM 1302 888369 - 888355 - g 70 -5 -4.57755 | ATTGAGGATATAAAA TCTTAC AAA GCAAGA TGGGAAGAAAAAAAG CLK_0152 887236 - 888495 + | putative dnaD protein CLK_0153 888514 - 889053 + | sigma-70 family RNA polymerase sigma factor CLK_0154 889305 - 889484 + | hypothetical protein TERM 1303 889493 - 889461 - f 81 -7.2 -4.79826 | gap 1, opp_overlap 889462 889463, overlap 889463 889481 ATAGAGCACCAAAAA GATGAGTATTTCACT AAAA AGTGAGATACTCA-C TTTTTTATAAATATA TERM 1304 889462 - 889493 + F 100 -9.6 -5.29782 | opp_overlap 889461 889463 889481, overlap 889463 TAGAGCACCAAAAAG ATGAGTATTTCACT AAAA AGTGAGATACTCAC TTTTTTATAAATATA TERM 1305 889492 - 889463 - f 100 -10.9 -4.01045 | opp_overlap 889462 889463, overlap 889461 889481 AGAGCACCAAAAAGA TGAGTATTTCACT AAAA AGTGAGATACTCA CTTTTTTATAAATAT TERM 1306 889463 - 889492 + F 100 -13.1 -3.76785 | opp_overlap 889463 889461 889481, overlap 889462 AGAGCACCAAAAAGA TGAGTATTTCACT AAAA AGTGAGATACTCA CTTTTTTATAAATAT TERM 1307 889493 - 889481 - f 86 -7.7 -4.7373 | opp_overlap 889463 889462, overlap 889463 889461 GTATTTCACTAAAAA GTGAG ATA CTCAC TTTTTTATAAATATA TERM 1308 889791 - 889777 - g 72 -5 -4.79955 | ATATTCACAATAAAA TTCCCA ATT TGGAAA AATGGCTATCTAATT CLK_0155 889635 - 890465 + | hypothetical protein TERM 1309 890714 - 890670 - f 100 -13.8 -3.08133 | gap 1, opp_overlap 890680 TATCCAGGGACGTAA CCGCTCT-TTACTCCCACCTT AAAG AAGATGGAAGTATTAGAGCGG GTAGTCATCGGATAA TERM 1310 890862 - 890850 - g 72 -4.9 -4.90266 | overlap 890844 GGCAGTAAGTAAAAA TCTTT TAG AAAGA AATCTAGCTCTAGAA CLK_0156 890833 - 891054 + | hypothetical protein CLK_0157 891074 - 891301 + | hypothetical protein TERM 1311 891336 - 891302 - T 100 -11.6 -4.1391 | opp_overlap 891310, overlap 891310 AAAATAGAAGAATAA TTTAAAAAGCTCTCAC ATT GTGAGGGCTTTTTATA ACTGAATTTTTAAGA TERM 1312 891328 - 891310 - T 93 -8.8 -4.82333 | opp_overlap 891310, overlap 891302 AGAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT TERM 1313 891310 - 891328 + T 100 -11 -4.88067 | opp_overlap 891302 891310 AGAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT CLK_0158 891654 - 891523 - | HxlR family transcriptional regulator CLK_0159 891713 - 891940 + | hypothetical protein CLK_0160 891895 - 892020 + | hypothetical protein CLK_0161 892430 - 893032 + | transcriptional regulator TERM 1314 893610 - 893580 - g 73 -9.2 -2.52635 | opp_overlap 893580 893609, overlap 893579 AGTTTCAGTACCAAT TGTCATAATTGTAA TGA TCCCAATTATGACA TTTGGAGCAAAAGTT CLK_0162 893032 - 894816 + | multidrug resistance ABC transporter ATP-binding and permease protein CLK_0163 894974 - 895093 + | hypothetical protein TERM 1315 895427 - 895388 - T 73 -3.2 -5.50499 | gap 1, opp_overlap 895393, overlap 895376 895393 GTATATTTAAAAAAA TAAGAG-TCAATACTTA AGATATG TAATTATTGACCTCTTA ATATCTCAAAGGCAG TERM 1316 895467 - 895438 - T 100 -15.1 -3.66803 | opp_overlap 895438 TCTTAATATCTCAAA GGCAGTCTATGGA AAAA TCCGTAGACTGCC TTTTAAGTTTAATTT TERM 1317 895438 - 895467 + T 100 -17.3 -4.40221 | opp_overlap 895438 TCTTAATATCTCAAA GGCAGTCTATGGA AAAA TCCGTAGACTGCC TTTTAAGTTTAATTT CLK_0164 895882 - 895526 - | hypothetical protein arsC 896329 - 896568 + | arsenate reductase ArsC TERM 1318 896622 - 896593 - f 75 -6.6 -4.45083 | opp_overlap 896593 GCTATATTTATAAAA GATACTATGG GGATTAATGA CCATAGTATC TTTTTATTGGGATAA TERM 1319 896593 - 896622 + F 80 -6.6 -5.08601 | opp_overlap 896593 GCTATATTTATAAAA GATACTATGG GGATTAATGA CCATAGTATC TTTTTATTGGGATAA CLK_0166 896933 - 897250 + | arsenical resistance operon repressor TERM 1320 898412 - 898378 - f 78 -10.2 -2.5054 | opp_overlap 898383 898408, overlap 898383 ATAAAAATAATAATT TAAAAGGAGTAGAAAA AAA TTTTCTGCTCCTTTTG CAGAGCCTCAAAACT TERM 1321 898383 - 898407 + F 100 -12.3 -4.08216 | opp_overlap 898378 898383 AATAATAATTTAAAA GGAGTAGAAAA AAA TTTTCTGCTCC TTTTGCAGAGCCTCA TERM 1322 898407 - 898383 - f 100 -10.1 -4.38637 | opp_overlap 898383, overlap 898378 AATAATAATTTAAAA GGAGTAGAAAA AAA TTTTCTGCTCC TTTTGCAGAGCCTCA CLK_0169 898766 - 899317 + | phosphoglycerate mutase family protein TERM 1323 899539 - 899580 + F 100 -13 -5.24129 | gap 1, opp_overlap 899539 899541 GCGGCAACAGACAGA CACGCCGGAGCGGATGGGC TACAC GCCTTTCCACTC-GGCGTG TTTTTTGTCGAAAAG TERM 1324 899580 - 899539 - f 93 -13 -3.10493 | gap 1, opp_overlap 899539, overlap 899541 GCGGCAACAGACAGA CACGCCGGAGCGGATGGGC TACAC GCCTTTCCACTC-GGCGTG TTTTTTGTCGAAAAG TERM 1325 899578 - 899541 - f 82 -9.8 -3.10895 | gap 1, opp_overlap 899539, overlap 899539 GGCAACAGACAGACA CGCCGGAGCGGATGGGC TACAC GCCTTTCCACTC-GGCG TGTTTTTTGTCGAAA TERM 1326 899911 - 899926 + G 72 -2.6 -5.40072 | GCAAGTATGAATTCG CAATTT GGCC AAGTTG TTTTTTTGACAGGAA CLK_0170 899719 - 900252 + | hypothetical protein TERM 1327 900317 - 900298 - f 72 -8 -3.64703 | opp_overlap 900298 900302, overlap 900302 900314 CCCGGGGTATGTAAA CAAATTGT AAAT ACAATTTG TTTCAATAGATACAA TERM 1328 900298 - 900317 + F 73 -8 -3.6682 | opp_overlap 900298 900302 900314, overlap 900302 CCCGGGGTATGTAAA CAAATTGT AAAT ACAATTTG TTTCAATAGATACAA TERM 1329 900362 - 900380 + F 100 -11 -4.88067 | opp_overlap 900362 AGAATAATTTGAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT TERM 1330 900380 - 900362 - f 84 -8.8 -4.24726 | opp_overlap 900362 AGAATAATTTGAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT CLK_0171 900688 - 901266 + | putative transcriptional regulator CLK_0172 901276 - 901533 + | hypothetical protein TERM 1331 901741 - 901782 + F 86 -9.6 -4.18197 | AGACGCTAAGACGCA GGGCCGATAGTTTGAG TTAATTATTT CTCAAGTTATCGGCTC TTTTAAATAGAGAAT TERM 1332 901797 - 901820 + F 81 -10.4 -2.73203 | opp_overlap 901797, overlap 901796 901794 901793 CTTTTAAATAGAGAA TGGAGGAATG TATT TATTCCTCCA CTTCATTATTACTGG TERM 1333 901820 - 901797 - f 84 -9.7 -3.76232 | opp_overlap 901797 901796 901794 901793 CTTTTAAATAGAGAA TGGAGGAAT GTATTT ATTCCTCCA CTTCATTATTACTGG TERM 1334 902015 - 901962 - f 78 -6.5 -4.90296 | gap 1, opp_overlap 901962 901972, overlap 901964 901966 901971 AAAATTTTATAAAAA TGTATAAAGGCCATCTATAAATAATT ATG AATTATT-ATAGATGGTTTTTATAGA GTTTTATAGAGTTTG TERM 1335 901962 - 902015 + F 90 -10.9 -3.26262 | gap 1, opp_overlap 901962 901964 901966 901971, overlap 901972 AAAATTTTATAAAAA TGTATAAAGGCCATCTATAAATAATT ATG AATTATT-ATAGATGGTTTTTATAGA GTTTTATAGAGTTTG TERM 1336 902013 - 901964 - f 72 -9.1 -2.70446 | gap 1, opp_overlap 901962 901972, overlap 901962 901966 901971 AATTTTATAAAAATG TATAAAGGCCATCTATAAATAATT ATG AATTATT-ATAGATGGTTTTTATA GAGTTTTATAGAGTT TERM 1337 901972 - 902005 + F 100 -10.7 -4.90296 | gap 1, opp_overlap 901971 901966 901964 901962, overlap 901962 AAAAATGTATAAAGG CCATCTATAAATAATT ATG AATTATT-ATAGATGG TTTTTATAGAGTTTT CLK_0173 902084 - 903016 + | ABC transporter, ATP-binding protein CLK_0174 903009 - 904145 + | hypothetical protein TERM 1338 904332 - 904312 - f 89 -9.7 -4.33754 | opp_overlap 904313, overlap 904313 AAGGATAATTTAAAA GGCTCTCAC ATT GTGAGAGCT TTTATCAGGATATTT TERM 1339 904331 - 904313 - f 100 -13.2 -3.19168 | opp_overlap 904313, overlap 904312 AGGATAATTTAAAAG GCTCTCAC ATT GTGAGAGC TTTTATCAGGATATT TERM 1340 904313 - 904331 + F 100 -13.2 -4.39828 | opp_overlap 904312 904313 AGGATAATTTAAAAG GCTCTCAC ATT GTGAGAGC TTTTATCAGGATATT TERM 1341 904657 - 904711 + F 100 -21.2 -4.04318 | gap 1, opp_overlap 904657 904658 904660 904688, overlap 904658 TACGTCCCTGGATAA C-GATTTCTAAGCTTCAGAGGGGGT AAAAAA ACTTCCTCTGAAGCTTAGAAATCTG TTTATAGTATCTAAA TERM 1342 904710 - 904657 - f 100 -17 -3.28924 | opp_overlap 904657 904658, overlap 904658 904660 904688 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGAGGGGGT AAAAAA ACTTCCTCTGAAGCTTAGAAATCT GTTTATAGTATCTAA TERM 1343 904709 - 904658 - f 100 -20.5 -2.57211 | opp_overlap 904657 904658, overlap 904657 904660 904688 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGGGT AAAAAA ACTTCCTCTGAAGCTTAGAAATC TGTTTATAGTATCTA TERM 1344 904658 - 904709 + F 100 -24.9 -3.61175 | opp_overlap 904658 904657 904660 904688, overlap 904657 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGGGT AAAAAA ACTTCCTCTGAAGCTTAGAAATC TGTTTATAGTATCTA TERM 1345 904707 - 904660 - f 100 -17.3 -2.82623 | opp_overlap 904658 904657, overlap 904658 904657 904688 GTCCCTGGATAACGA TTTCTAAGCTTCAGAGGGGGT AAAAAA ACTTCCTCTGAAGCTTAGAAA TCTGTTTATAGTATC TERM 1346 904699 - 904688 - f 76 -4.4 -5.41143 | opp_overlap 904658 904657, overlap 904660 904658 904657 GAGGGGGTAAAAAAA CTTC CTCT GAAG CTTAGAAATCTGTTT CLK_0175 904782 - 905243 + | hypothetical protein thyA 905233 - 906207 + | thymidylate synthase CLK_0177 906219 - 906977 + | UbiE/COQ5 family methlytransferase TERM 1347 907990 - 907977 - g 74 -2.4 -5.50774 | opp_overlap 907977 TATAAGAAAGAAAAA GCAA TTGAGC TTGC TAATATTATTACAGA TERM 1348 908069 - 908045 - g 74 -6.7 -4.34402 | opp_overlap 908048 TTCTCCAGATGAAAA TAATAAATATC CTC AATATTTATTA CCTGCTAGAAGAAGT CLK_0178 907023 - 908237 + | putative thiaminase I TERM 1349 908290 - 908267 - f 71 -6.8 -4.08887 | opp_overlap 908267 ATCATTGAAATTAAA GGTACTTTTA TTAT TAAAAGTGCC TTTTTATAGAAGGGA TERM 1350 908267 - 908290 + F 93 -9 -4.82901 | opp_overlap 908267 ATCATTGAAATTAAA GGTACTTTTA TTAT TAAAAGTGCC TTTTTATAGAAGGGA thiD 908315 - 909142 + | phosphomethylpyrimidine kinase CLK_0180 909314 - 909547 + | hypothetical protein TERM 1351 909753 - 909797 + T 80 -6 -5.10767 | opp_overlap 909748 ATCTTATAAATAAAA TCTAGTGAAAATTTTAGGTT ATATA AATAAGAAATTTTCACTAGA TTTTTATATTAAATA TERM 1352 909807 - 909820 + T 70 -2.5 -5.5112 | overlap 909800 909806 ACTAGATTTTTATAT TAAAT ATTA ATTTA TTTTTTATTCATAAC CLK_0181 910436 - 909972 - | putative transporter CLK_0182 910841 - 911629 + | ABC transporter, ATP-binding protein TERM 1353 911753 - 911734 - gf 73 -5.8 -4.57516 | overlap 911745 ATACTTAAATTAAAA CTTCTAAT GGAT ACTAGAAG AGTACCAACAATATA CLK_0183 911632 - 913317 + | ABC transporter, permease protein CLK_0184 913281 - 913430 + | two component sensor kinase TERM 1354 913460 - 913431 - f 95 -10.1 -4.19746 | opp_overlap 913433, overlap 913433 TGGAGTTTAAAATAA GAGGCTGTACTCA AAAA TAAGTACAGCCTT TTTTACCTTGTGTAT TERM 1355 913433 - 913458 + F 100 -10.5 -5.20154 | opp_overlap 913431 913433 GAGTTTAAAATAAGA GGCTGTACTCA AAAA TAAGTACAGCC TTTTTTACCTTGTGT TERM 1356 913458 - 913433 - f 95 -12.7 -3.69506 | opp_overlap 913433, overlap 913431 GAGTTTAAAATAAGA GGCTGTACTCA AAAA TAAGTACAGCC TTTTTTACCTTGTGT TERM 1357 915052 - 915037 - g 70 -6.2 -4.1043 | GGCAAACAGTATAAA TGCTAT AGTA ATAGCA CAACAACAGGCAGCC CLK_0185 914126 - 915121 + | hypothetical protein CLK_0186 915392 - 916417 + | hypothetical protein TERM 1358 916480 - 916440 - f 91 -8.5 -5.06735 | opp_overlap 916443 916448, overlap 916448 TATAAATTAGAAAAA TGTAAAAAGCATTCAATCT TTG AGATTGAATGCTTTTGTTA ATATATCTTCATAAT TERM 1359 916443 - 916477 + F 100 -14.6 -3.38297 | opp_overlap 916440 916448, overlap 916448 AAATTAGAAAAATGT AAAAAGCATTCAATCT TTG AGATTGAATGCTTTTG TTAATATATCTTCAT TERM 1360 916472 - 916448 - f 100 -14.5 -4.93595 | opp_overlap 916448 916443, overlap 916440 AGAAAAATGTAAAAA GCATTCAATCT TTG AGATTGAATGC TTTTGTTAATATATC TERM 1361 916448 - 916472 + F 100 -14.5 -4.77079 | opp_overlap 916440 916448, overlap 916443 AGAAAAATGTAAAAA GCATTCAATCT TTG AGATTGAATGC TTTTGTTAATATATC CLK_0187 916601 - 917293 + | ABC transporter, ATP-binding protein TERM 1362 919186 - 919170 - g 74 -6.7 -4.35675 | AAAAACGGAGGAAAA GTAATAT CAG ATATTAC AAAATATAAGGTTGG CLK_0188 917280 - 919976 + | putative ABC transporter, permease protein CLK_0189 920488 - 920607 + | hypothetical protein TERM 1363 920641 - 920658 + F 84 -4.9 -5.67063 | opp_overlap 920641 ATATTTGAATAAAAA GAACTTA GAGA TAGGTTC TTTTTTTATACTAAA CLK_0190 920747 - 921460 + | DNA-binding response regulator TERM 1364 921448 - 921502 + F 82 -9.7 -3.38207 | gap 1, opp_overlap 921463, overlap 921463 AGGTATAGGCTATAG GTGGAGTGAGTA-AAATTGCTTTATG AGAG TATAAAGCAATTTGTATAAACTCCAC TTAATATCTTAACTC TERM 1365 921486 - 921463 - f 73 -6.9 -4.2828 | opp_overlap 921448 921463 GTGGAGTGAGTAAAA TTGCTTTAT GAGAGT ATAAAGCAA TTTGTATAAACTCCA TERM 1366 921463 - 921486 + F 77 -7.6 -4.05033 | opp_overlap 921463, overlap 921448 GTGGAGTGAGTAAAA TTGCTTTATG AGAG TATAAAGCAA TTTGTATAAACTCCA TERM 1367 922217 - 922203 - g 85 -2.2 -6.12458 | overlap 922205 TAAAAAAAGAAAAAA TATTTT TAA AAAACA TAATATCAGATATTT CLK_0191 921614 - 922876 + | sensor histidine kinase CLK_0192 923066 - 923707 + | hypothetical protein TERM 1368 923782 - 923734 - T 73 -9.1 -2.82138 | opp_overlap 923739, overlap 923739 TAAAAATCACATAAC TTAAATTAAGCACACCATGAATA TTA TTTTTGTGGTGTGCTTAATTTAG TGTAGATTAAAAATT TERM 1369 923739 - 923777 + T 100 -13.4 -3.86283 | opp_overlap 923734 923739 ATCACATAACTTAAA TTAAGCACACCATGAATA TTA TTTTTGTGGTGTGCTTAA TTTAGTGTAGATTAA TERM 1370 923777 - 923739 - T 81 -9 -3.83724 | opp_overlap 923739, overlap 923734 ATCACATAACTTAAA TTAAGCACACCATGAATA TTA TTTTTGTGGTGTGCTTAA TTTAGTGTAGATTAA CLK_0193 923986 - 923798 - | small acid-soluble spore protein, H-type TERM 1371 924191 - 924181 - H 75 -4 -5.45802 | opp_overlap 924181 TCTCTAAAAGAAAAA TCTT TAA AAGA TTTGCGATGTGTTAC TERM 1372 924244 - 924287 + H 83 -3.3 -6.09196 | GAGTTATATTCAAAA CACTTATTTTTCTCTTTAG TGTAAT CTAGTGGAGAAAATAAGTG TTTTTTTATTTTAAA CLK_0194 924316 - 925095 + | hypothetical protein CLK_0195 925768 - 926748 + | hypothetical protein TERM 1373 926814 - 926845 + F 72 -8 -3.62522 | overlap 926815 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTTCCACTAAAGC TTATTAACAGAATTC TERM 1374 926850 - 926889 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 926858, overlap 926854 926855 926857 TCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 1375 926855 - 926885 + F 79 -9.8 -2.75769 | opp_overlap 926858, overlap 926854 926850 926857 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1376 926882 - 926858 - f 90 -10.1 -3.71552 | opp_overlap 926857 926855 926854 926850 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1377 926933 - 926956 + F 78 -9.6 -3.02144 | CGTAGCCGCTCTTTA CTCCCACCTT GAAG AAGATGGGAG TATTAGAGCGGGTAG hypB 927017 - 927685 + | hydrogenase accessory protein HypB CLK_0197 927723 - 930419 + | pyridine nucleotide-disulphide oxidoreductase family protein CLK_0198 930502 - 930843 + | hydrogenase nickel incorporation protein CLK_0199 930977 - 931432 + | DNA gyrase inhibitory protein, GyrI dapB 932113 - 932910 + | dihydrodipicolinate reductase TERM 1378 933221 - 933235 + G 70 -8.6 -2.64104 | opp_overlap 933221, overlap 933220 933223 ATGACGAATTAAAAA TAGCTG GAG CAGCTA GATTTTGTTGGATGT TERM 1379 933235 - 933221 - g 93 -8.6 -4.90869 | opp_overlap 933221 933220 933223 ATGACGAATTAAAAA TAGCTG GAG CAGCTA GATTTTGTTGGATGT CLK_0201 932932 - 933771 + | sulfurtransferase family protein TERM 1380 933955 - 933978 + F 100 -10.4 -4.75288 | opp_overlap 933954 933957 ATTGTATATACACAG CACTAGGTAC AAAA GTATCTAGTG TTTATTTTAATGTAA CLK_0202 934326 - 934910 + | hypothetical protein CLK_0203 935007 - 935201 + | hypothetical protein CLK_0204 935627 - 936154 + | isopentenyl-diphosphate delta-isomerase family protein TERM 1381 936722 - 936734 + G 71 -7.7 -3.45982 | overlap 936726 ATGGTTTTAACAGGT GCACT AGC AGTGC TATATTGTTTTGTAT CLK_0205 936497 - 936919 + | hypothetical protein CLK_0206 937206 - 937622 + | hypothetical protein CLK_0207 937682 - 938194 + | hypothetical protein TERM 1382 939604 - 939559 - g 71 -2 -5.37345 | opp_overlap 939561 939564 939567, overlap 939561 GCCAATGACAAAAAA GAGAATAATCGTAACAATTA TTTTGC TGATTGCTACGATTGTCCTG TGTATAATGTGCTTT CLK_0208 938306 - 939754 + | beta-lactamase CLK_0209 939947 - 940552 + | DNA-binding protein CLK_0210 941169 - 941792 + | VanZF CLK_0211 941920 - 942285 + | hypothetical protein TERM 1383 942589 - 942631 + F 84 -9.5 -3.72228 | opp_overlap 942591 942595, overlap 942591 942595 TTCTAATTCATAGAA AATAAATAAGAGTTCTC AAAATAAAA GAGAACTCTTATTTATG TATTGTTTTAAATTG TERM 1384 942629 - 942591 - f 100 -12.1 -4.57474 | opp_overlap 942589 942591 942595, overlap 942595 CTAATTCATAGAAAA TAAATAAGAGTTCTC AAAATAAAA GAGAACTCTTATTTA TGTATTGTTTTAAAT TERM 1385 942591 - 942629 + F 95 -12.1 -3.424 | opp_overlap 942591 942595, overlap 942589 942595 CTAATTCATAGAAAA TAAATAAGAGTTCTC AAAATAAAA GAGAACTCTTATTTA TGTATTGTTTTAAAT TERM 1386 942595 - 942625 + F 80 -8.5 -4.31833 | opp_overlap 942591 942595, overlap 942591 942589 TTCATAGAAAATAAA TAAGAGTTCTC AAAATAAAA GAGAACTCTTA TTTATGTATTGTTTT TERM 1387 942625 - 942595 - f 88 -8.5 -4.83243 | opp_overlap 942595 942591 942589, overlap 942591 TTCATAGAAAATAAA TAAGAGTTCTC AAAATAAAA GAGAACTCTTA TTTATGTATTGTTTT TERM 1388 942918 - 942904 - g 72 -4.4 -5.04082 | GAAATAATAAGAAAA TTTAAT TTA ATTAAA AAAATAAAAGAAAAT TERM 1389 943115 - 943105 - g 72 -4 -5.09259 | GACTTTAAAATAAAA TCTA CAG TAGA ATCACAGGAACTTAT CLK_0212 942706 - 944112 + | hypothetical protein TERM 1390 944273 - 944256 - f 86 -4.3 -5.95286 | opp_overlap 944256 944258 ATTAAAAATAAAAAA TATATTA AAGT TAATATA TAGTTATTTACACAA CLK_0213 944448 - 945617 + | putative amidohydrolase TERM 1391 946841 - 946831 - g 70 -4 -4.89233 | TATGAAGATGAAAAA GATA TAA TATC TGCTACTATAAAATC brnQ 946183 - 947487 + | branched-chain amino acid transport system II carrier protein TERM 1392 947539 - 947493 - T 72 -8.3 -3.17901 | opp_overlap 947504, overlap 947504 AGATGCTTAATTCAA TATAATAAAAACACCTTGTTG TAAAG CAATAAGGTGTTTTTTTTATT TTTTTGTTAAAGTTT TERM 1393 947504 - 947528 + T 100 -10.1 -6.47325 | opp_overlap 947504 947493 TCAATATAATAAAAA CACCTTGTTGT AAA GCAATAAGGTG TTTTTTTTATTTTTT TERM 1394 947528 - 947504 - T 90 -7.2 -5.29716 | opp_overlap 947504, overlap 947493 TCAATATAATAAAAA CACCTTGTTG TAAAG CAATAAGGTG TTTTTTTTATTTTTT TERM 1395 947601 - 947637 + T 71 -5.3 -4.58395 | opp_overlap 947597 947602, overlap 947602 ATATAATAAAACTAA AGGTTGTCTCAAAAT TAAATCT ATTTTGAAACAACCC TTTTTACAAGATAAA TERM 1396 947602 - 947636 + T 77 -8.8 -3.34716 | opp_overlap 947602 947597, overlap 947601 TATAATAAAACTAAA GGTTGTCTCAAAAT TAAATCT ATTTTGAAACAACC CTTTTTACAAGATAA TERM 1397 947636 - 947602 - T 100 -11 -4.35361 | opp_overlap 947601 947602, overlap 947597 TATAATAAAACTAAA GGTTGTCTCAAAAT TAAATCT ATTTTGAAACAACC CTTTTTACAAGATAA CLK_0215 950145 - 947665 - | methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein family 5 TERM 1398 948406 - 948418 + g 70 -3.5 -5.06816 | overlap 948403 TAGTAAATCTTGCTC TATAA GAG TTATA TTTTTATTAGAACAT TERM 1399 948993 - 949003 + g 72 -6.8 -4.05446 | TTCCAGGAGATATTT CTCC ATA GGAG TTTATGGTTAAAAGA TERM 1400 950269 - 950259 - H 70 -4 -5.12971 | AACATTTAATAAAAA TTGT ATC ACAA AAGATCAATAAAGAA feoA 950368 - 950604 + | ferrous iron transport protein A TERM 1401 950676 - 950691 + F 74 -6.2 -4.67692 | opp_overlap 950676 950672 TTAAAAATTAATATA CTTTAC GGGA GTAAAG TTTATTTGATTTTAA TERM 1402 951414 - 951396 - g 72 -4.6 -4.91109 | opp_overlap 951397 951399, overlap 951397 TCTTTATTAGAAAAA GTATTTCC CGG GGAAATAT CCTTACAATGGTTAG TERM 1403 951413 - 951397 - g 73 -8.1 -3.54183 | opp_overlap 951397 951399, overlap 951396 CTTTATTAGAAAAAG TATTTCC CGG GGAAATA TCCTTACAATGGTTA feoB 950748 - 951530 + | ferrous iron transport protein B feoB-1 951527 - 953050 + | ferrous iron transport protein B TERM 1404 953256 - 953207 - f 100 -18.4 -5.4251 | opp_overlap 953210 953252, overlap 953210 953251 953252 TTTATATATAAAAAA TAAGACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTCTTG CTCCAAGATTTCTAT TERM 1405 953210 - 953253 + F 100 -20.1 -3.16055 | opp_overlap 953210 953207 953251 953252, overlap 953252 ATATATAAAAAATAA GACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTC TTGCTCCAAGATTTC TERM 1406 953253 - 953210 - f 100 -20.1 -4.78477 | opp_overlap 953210 953252, overlap 953207 953251 953252 ATATATAAAAAATAA GACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTC TTGCTCCAAGATTTC TERM 1407 953339 - 953323 - f 80 -9.5 -3.16564 | TGTCGATTTGATGAA CAAAGCT TAA AGCTTTG ACGAGCTACTCCCCT cobC 953724 - 954338 + | alpha-ribazole phosphatase CLK_0219 954480 - 954322 - | hypothetical protein TERM 1408 954689 - 954669 - g 82 -7.1 -4.73108 | TTGACAAAAGGAAAA TTATAATTA GTG TAATTATAA CAGGTGTCATCTTAT CLK_0221 954629 - 956185 + | vanW family protein TERM 1409 956343 - 956287 - f 100 -11.2 -4.18191 | opp_overlap 956289 956291, overlap 956331 CAAAAAATAGAAGAA GAGACACCCTTTCCATAATATGTT AAGTGATGA AATATAACATAGAAAGGGTGTCTC TCATGAATATTATCC cobS 956455 - 957201 + | cobalamin 5'-phosphate synthase CLK_0223 957477 - 958262 + | hypothetical protein CLK_0224 958320 - 958607 + | hypothetical protein CLK_0225 958732 - 958914 + | hypothetical protein TERM 1410 959119 - 959106 - g 86 -5.3 -5.50723 | GTAGCAAAACAAAAA GGTTT TTAC AAACC AGCAGCACAAGCTTC CLK_0226 958932 - 959180 + | hypothetical protein CLK_0227 959707 - 961059 + | hypothetical protein TERM 1411 961114 - 961085 - T 86 -9.6 -4.08394 | opp_overlap 961085 ATATGCTGTTGAAAA TATTACTGAAAA TTAATT TTTTCAGTAATA TTTTTTATGTGCTCA TERM 1412 961085 - 961114 + T 100 -9.6 -5.39721 | opp_overlap 961085 ATATGCTGTTGAAAA TATTACTGAAAA TTAATT TTTTCAGTAATA TTTTTTATGTGCTCA TERM 1413 961160 - 961187 + T 76 -8.6 -3.73611 | opp_overlap 961161, overlap 961161 961163 AGTAATCATAAAAAA ATAGCTAATTCA TTTT TGAATTAGCTAC TTCTATGTATTTAAT TERM 1414 961186 - 961161 - T 100 -12.1 -5.71983 | opp_overlap 961160 961161 961163 GTAATCATAAAAAAA TAGCTAATTCA TTTT TGAATTAGCTA CTTCTATGTATTTAA TERM 1415 961161 - 961186 + T 89 -12.1 -2.83082 | opp_overlap 961161, overlap 961160 961163 GTAATCATAAAAAAA TAGCTAATTCA TTTT TGAATTAGCTA CTTCTATGTATTTAA TERM 1416 961163 - 961184 + T 85 -10.3 -2.95129 | opp_overlap 961161, overlap 961161 961160 AATCATAAAAAAATA GCTAATTCA TTTT TGAATTAGC TACTTCTATGTATTT CLK_0228 961568 - 961236 - | CGGC domain-containing protein CLK_0229 961853 - 962206 + | putative 6-pyruvoyl tetrahydropterin synthase folP 962298 - 963485 + | dihydropteroate synthase CLK_0231 963649 - 963900 + | hypothetical protein folK 964000 - 964455 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase CLK_0233 964574 - 965014 + | heat shock protein TERM 1417 965114 - 965075 - f 100 -15.4 -3.9644 | opp_overlap 965077 965081, overlap 965077 965081 965109 GTGTTAATATAATAA TATAAATTAGTGTAGGAT ATAT ATCCTACACTAATTTATT ATAAAATTTTGCACA TERM 1418 965077 - 965112 + F 100 -18 -3.42366 | opp_overlap 965075 965077 965081 965109, overlap 965081 GTTAATATAATAATA TAAATTAGTGTAGGAT ATAT ATCCTACACTAATTTA TTATAAAATTTTGCA TERM 1419 965112 - 965077 - f 100 -18 -3.56921 | opp_overlap 965077 965081, overlap 965075 965081 965109 GTTAATATAATAATA TAAATTAGTGTAGGAT ATAT ATCCTACACTAATTTA TTATAAAATTTTGCA TERM 1420 965081 - 965108 + F 100 -14.4 -4.33851 | opp_overlap 965077 965075 965081, overlap 965077 ATATAATAATATAAA TTAGTGTAGGAT ATAT ATCCTACACTAA TTTATTATAAAATTT TERM 1421 965108 - 965081 - f 100 -14.4 -4.38447 | opp_overlap 965081 965077, overlap 965077 965075 ATATAATAATATAAA TTAGTGTAGGAT ATAT ATCCTACACTAA TTTATTATAAAATTT CLK_0234 965298 - 966650 + | MerR family transcriptional regulator TERM 1422 966671 - 966658 - f 70 -2.5 -5.56573 | overlap 966652 966661 AGAAATAAATAAAAA TTATT TTAA AATAA AAAATCAATTGTTAA CLK_0235 966705 - 967880 + | exopolysaccharide biosynthesis protein TERM 1423 967959 - 967908 - f 86 -7.8 -4.84529 | opp_overlap 967908 967914 967919, overlap 967909 967910 967912 TTATAAAGCTAAAAA TTTATATTAAATTATAAGTAAGTA GAAG TATTTACTTATAATTTAATATAGT AAAATAATTTTTAAT TERM 1424 967958 - 967909 - f 95 -11.3 -3.49633 | opp_overlap 967908 967914 967919, overlap 967908 967910 967912 TATAAAGCTAAAAAT TTATATTAAATTATAAGTAAGTA GAAG TATTTACTTATAATTTAATATAG TAAAATAATTTTTAA TERM 1425 967957 - 967910 - f 100 -14.8 -2.68695 | opp_overlap 967908 967914 967919, overlap 967909 967908 967912 ATAAAGCTAAAAATT TATATTAAATTATAAGTAAGTA GAAG TATTTACTTATAATTTAATATA GTAAAATAATTTTTA TERM 1426 967955 - 967912 - f 91 -13 -2.87035 | opp_overlap 967908 967914 967919, overlap 967910 967909 967908 AAAGCTAAAAATTTA TATTAAATTATAAGTAAGTA GAAG TATTTACTTATAATTTAATA TAGTAAAATAATTTT TERM 1427 967914 - 967953 + F 93 -13.4 -2.80291 | opp_overlap 967912 967910 967909 967908, overlap 967908 967919 AGCTAAAAATTTATA TTAAATTATAAGTAAGTA GAAG TATTTACTTATAATTTAA TATAGTAAAATAATT TERM 1428 967919 - 967948 + F 81 -8.9 -3.86202 | opp_overlap 967912 967910 967909 967908, overlap 967914 AAAATTTATATTAAA TTATAAGTAAGTA GAAG TATTTACTTATAA TTTAATATAGTAAAA CLK_0236 968142 - 969263 + | putative pleiotropic regulatory protein CLK_0237 969835 - 970506 + | quaternary ammonium compound-resistance protein TERM 1429 970521 - 970499 - f 73 -3.5 -5.60993 | opp_overlap 970499 TTGTTTACAAAAAAA TATTTTGAG TTAGC CGCAAAATA TTTTTAATTTAGCGT TERM 1430 970735 - 970723 - f 78 -7.7 -4.3129 | TATTTACTACCAAAA CAACC ATT GGTTG GTGCATAAATATGAT CLK_0238 970860 - 971489 + | CAAX amino protease TERM 1431 972496 - 972521 + G 70 -6.1 -4.07618 | overlap 972502 TTTAGCAATTACATG TCTACTTCTGG ATTG CCAGATGTTGA TTTAATTATTAGAAC uppS 971959 - 972678 + | di-trans,poly-cis-decaprenylcistransferase CLK_0240 972866 - 973495 + | metal-binding protein TERM 1432 973639 - 973596 - f 79 -9.8 -2.7056 | opp_overlap 973602, overlap 973600 973602 AAAATGAACAATTTA TAAAGACACCACATTATTCA AAAT TGAATTCTGTGGTGTTTTTA TGTCGCAATACAAAG TERM 1433 973602 - 973633 + F 100 -8.8 -4.9725 | opp_overlap 973600 973596 973602 AACAATTTATAAAGA CACCACATTATTCA AAAT TGAATTCTGTGGTG TTTTTATGTCGCAAT TERM 1434 973633 - 973602 - f 79 -8.8 -3.59481 | opp_overlap 973602, overlap 973600 973596 AACAATTTATAAAGA CACCACATTATTCA AAAT TGAATTCTGTGGTG TTTTTATGTCGCAAT CLK_0241 973839 - 974351 + | ECF subfamily RNA polymerase sigma factor TERM 1435 974682 - 974667 - g 72 -6.2 -4.31587 | TGCTAAAAATAAGAA TGACTT TTCT AAGTCA GTTGAGGATAAGGGG CLK_0242 974356 - 975519 + | hypothetical protein CLK_0243 976076 - 976480 + | hypothetical protein CLK_0244 976573 - 976908 + | hypothetical protein TERM 1436 977006 - 976976 - T 72 -6.3 -4.45723 | gap 1, opp_overlap 976976, overlap 976971 976999 AATAATAGATTAAAA TACCGCATTATTCA GAAA TGAA-ATTGCGGTA TTTTTTATGCCGCAA TERM 1437 976976 - 977006 + T 80 -6.3 -5.24129 | gap 1, opp_overlap 976976 976971 976999 AATAATAGATTAAAA TACCGCATTATTCA GAAA TGAA-ATTGCGGTA TTTTTTATGCCGCAA TERM 1438 977154 - 977176 + T 73 -7.1 -4.02707 | gap 1, opp_overlap 977148 977154 ATATAAAAGTCAAAA GGACTA-CCT TATG AGGATAGTCC TTATTTAACTATTTA TERM 1439 977176 - 977154 - T 77 -7.1 -4.46854 | gap 1, opp_overlap 977154, overlap 977148 ATATAAAAGTCAAAA GGACTA-CCT TATG AGGATAGTCC TTATTTAACTATTTA CLK_0245 977739 - 977185 - | putative flavoredoxin TERM 1440 977856 - 977881 + H 73 -7.7 -3.75535 | TGTAATAGTATGTCC TCAAGTCAATA TGTT TATTGTCTTGA TTTCAATGTGTATAG CLK_0246 978062 - 978874 + | non-haem haloperoxidase family protein cadD 979176 - 979844 + | cadmium resistance transporter CadD CLK_0248 979993 - 980409 + | hypothetical protein CLK_0249 980536 - 980673 + | hypothetical protein TERM 1441 980764 - 980737 - T 79 -7.1 -4.6709 | opp_overlap 980739, overlap 980739 TAAAATTAGATAAAA TAGGAGATTAC TGACAT GTAATCTCCTG TGGTATAGATATTAA TERM 1442 980762 - 980739 - T 86 -9.7 -3.92324 | opp_overlap 980739, overlap 980737 AAATTAGATAAAATA GGAGATTAC TGACAT GTAATCTCC TGTGGTATAGATATT TERM 1443 980739 - 980762 + T 76 -9.7 -2.87294 | opp_overlap 980739 980737 AAATTAGATAAAATA GGAGATTAC TGACAT GTAATCTCC TGTGGTATAGATATT CLK_0250 981233 - 980817 - | hypothetical protein TERM 1444 981433 - 981420 - g 74 -5.3 -4.91459 | CAAGAGTTACAAAAA GATAG TAGG CTATC TATAAGAGAATTATC CLK_0251 981372 - 981821 + | HTH-type transcriptional regulator LrpC TERM 1445 982214 - 982267 + F 75 -5.6 -5.00616 | gap 1, overlap 982209 CGGGTAGGGATGCTA TAAGCATTCATGTGGACATCAT-TA GGTCA TAGAAGATGTACATATGGATGCTTG TTTTTTACAACAGCA nimA 982308 - 982802 + | nitroimidazole resistance protein NimA TERM 1446 983143 - 983121 - T 100 -10.6 -4.46854 | opp_overlap 983121 ATATAAAAGTCAAAA GGACTACCTT ATG AGGGTAGTCC TTATTTAATTATTTA TERM 1447 983121 - 983143 + T 100 -12.8 -4.17987 | opp_overlap 983121 ATATAAAAGTCAAAA GGACTACCTT ATG AGGGTAGTCC TTATTTAATTATTTA CLK_0253 983640 - 983152 - | putative flavoredoxin CLK_0254 984061 - 984396 + | hypothetical protein TERM 1448 984464 - 984492 + F 79 -4 -5.80951 | gap 1 AATAATAGATTAAAA TACCGCATTATTC ATTA GAATAG-GTGGTA TTTTTTATTTTAAGT CLK_0255 985306 - 985545 + | putative metal-dependent membrane protease CLK_0256 985605 - 985724 + | hypothetical protein CLK_0257 987649 - 985889 - | O-acetyltransferase OatA CLK_0258 987907 - 988083 + | hypothetical protein TERM 1449 988192 - 988230 + T 100 -10.5 -4.9218 | opp_overlap 988192, overlap 988180 CCTTCATCACAAAAA TGTGGAGATTTAACCAG GTTAA TTGGATAAATTTCCACA TTTTTGTGATGAATA TERM 1450 988230 - 988192 - T 86 -7.6 -4.91109 | opp_overlap 988180 988192 CCTTCATCACAAAAA TGTGGAGATTTAACCA GGTTAAT TGGATAAATTTCCACA TTTTTGTGATGAATA CLK_0259 988481 - 988317 - | putative membrane membrane protein TERM 1451 988655 - 988612 - H 83 -11.3 -2.74233 | opp_overlap 988618 988652, overlap 988618 AAAGCAAATAATTTA TTAAAACACCGTAATATTC GAGTCT GAATTTTACGGTGTTTTTA TGTCGCAATACAAAT TERM 1452 988618 - 988649 + H 100 -11 -4.9725 | opp_overlap 988618 988612 AATAATTTATTAAAA CACCGTAATATTCG AGTC TGAATTTTACGGTG TTTTTATGTCGCAAT TERM 1453 988649 - 988618 - H 95 -10.3 -4.32651 | opp_overlap 988618, overlap 988612 AATAATTTATTAAAA CACCGTAATATTC GAGTCT GAATTTTACGGTG TTTTTATGTCGCAAT TERM 1454 988652 - 988685 + H 95 -10.6 -4.24948 | opp_overlap 988612 GAATTTTACGGTGTT TTTATGTCGCAATA CAAATA TATTGTGACATAAA TTTTCAATCTAATAA CLK_0260 988904 - 989416 + | rubrerythrin family protein TERM 1455 989479 - 989430 - T 70 -6 -4.21314 | opp_overlap 989444 AATAAGATGTTAAAA TAAAATGAAGTGCATAAGCTTC TTAATT GTAACTTACACACTTTATTTTA CTCTATTCTGTTGTA TERM 1456 989519 - 989550 + T 95 -12.4 -3.62522 | TAAACAGAGTTCTTG GCTTTAGAGGGAGT TTTT ACTTCCACTAAAGC TTATTAACAGAATTC TERM 1457 989555 - 989594 + T 73 -8.8 -2.90615 | gap 1, opp_overlap 989563, overlap 989559 989560 989562 TCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 1458 989560 - 989590 + T 79 -9.8 -2.75769 | opp_overlap 989563, overlap 989559 989555 989562 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1459 989587 - 989563 - T 90 -10.1 -3.71552 | opp_overlap 989562 989560 989559 989555 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1460 989638 - 989661 + T 71 -8.2 -3.02144 | opp_overlap 989623 CGTAGCCGCTCTTTA CTCCCACTTT GAAG AAAATGGGAG TATTAGAGCAGGTAG CLK_0261 990590 - 989796 - | putative ABC transporter, permease protein CLK_0262 991526 - 990609 - | ABC transporter, ATP-binding protein CLK_0263 992643 - 991498 - | DNA-binding protein TERM 1461 992143 - 992167 + gH 76 -3.6 -5.36441 | TCCTAGTGCCATCTC TGCCAATGCT TCCAT AGTATTTGCA TTTTTTATGTCAGAA TERM 1462 992398 - 992408 + gH 76 -2.6 -5.62219 | AAATTCATGAGAGAG TTTA CTA TAAA TTTTTTTAATATCTT TERM 1463 992730 - 992740 + H 80 -6.8 -4.98255 | GAAAAAGTTAACTTG CAGG AAA CCTG TTTTTATAATTAAAG CLK_0264 993093 - 993551 + | acetyltransferase CLK_0265 993749 - 994087 + | alkylhydroperoxidase CLK_0266 994179 - 994727 + | hypothetical protein TERM 1464 995170 - 995156 - g 77 -7.2 -4.25283 | AGGCGTGGATGAAAA CAAATG GAT CATTTG GGCAATTGAACATAA CLK_0267 995049 - 995531 + | GCN5-related N-acetyltransferase TERM 1465 995560 - 995589 + F 72 -3.7 -5.34309 | gap 1, opp_overlap 995560 995562, overlap 995562 GACAATTTACCTAAA CACCGTATTATTCA ACG TGAGTA-TACGGTA TTTTTGTTTCGTAAT TERM 1466 995562 - 995587 + F 70 -6.3 -4.29436 | gap 1, opp_overlap 995562 995560, overlap 995560 CAATTTACCTAAACA CCGTATTATTCA ACG TGAGTA-TACGG TATTTTTGTTTCGTA TERM 1467 995647 - 995616 - f 70 -6 -4.3665 | opp_overlap 995617 995618, overlap 995610 995617 995618 TAATTCAAATATAAA GCCTAGCTATTATA TAAG TACAATAGCTAGAT TAATTAATACTATTG TERM 1468 995646 - 995617 - f 80 -9.5 -3.20906 | opp_overlap 995617 995618, overlap 995610 995616 995618 AATTCAAATATAAAG CCTAGCTATTATA TAAG TACAATAGCTAGA TTAATTAATACTATT TERM 1469 995645 - 995618 - f 81 -10.8 -2.51459 | opp_overlap 995617 995618, overlap 995610 995617 995616 ATTCAAATATAAAGC CTAGCTATTATA TAAG TACAATAGCTAG ATTAATTAATACTAT CLK_0268 996218 - 996793 + | acetyltransferase CLK_0269 996890 - 997543 + | pentapeptide repeat-containing protein CLK_0270 997935 - 997759 - | hypothetical protein CLK_0271 998780 - 997953 - | MerR family transcriptional regulator TERM 1470 999453 - 999439 - g 78 -4.2 -5.41787 | opp_overlap 999440, overlap 999440 TAAAAAAGATAAAAA GTCCCT TTA AGGGAT ACTTTGTTGGAGAAT TERM 1471 999452 - 999440 - g 74 -7.7 -3.81412 | opp_overlap 999440, overlap 999439 AAAAAAGATAAAAAG TCCCT TTA AGGGA TACTTTGTTGGAGAA CLK_0272 998892 - 999509 + | acetyltransferase CLK_0273 999502 - 999657 + | hypothetical protein CLK_0274 999715 - 1000224 + | glutamate rich protein GrpB TERM 1472 1000377 - 1000345 - g 80 -8.7 -3.79044 | AAAAGAAATTGTAAA TGAAGTTTATTATTT TAG AGACAATAAACTTCA AATAGTAAATGAATT CLK_0275 1000274 - 1000798 + | acetyltransferase TERM 1473 1000971 - 1000961 - f 79 -4 -5.7827 | overlap 1000954 AAGATAAATAAAAAA TACT TTT AGTA AATAGATAACTATAA TERM 1474 1000974 - 1001020 + F 70 -5 -4.87803 | gap 1, opp_overlap 1000974 AATACTTTTAGTAAA TAGATAACTATAAAAATAA AGTACTCTAG TTATTTT-ATAGTTATCTA TTTTATTTAAAAGTA CLK_0276 1001098 - 1001235 + | hypothetical protein CLK_0277 1001950 - 1001249 - | hypothetical protein TERM 1475 1002182 - 1002215 + r 71 -8.4 -2.9961 | opp_overlap 1002182 1002189, overlap 1002189 TTTATAGATGAAAAA TAAAAAACTTCCTA AATCGA TAGGAAGTTCTTTA TGTAATCTTATTTAG TERM 1476 1002215 - 1002182 - R 100 -10.6 -4.84527 | opp_overlap 1002182 1002189, overlap 1002189 TTTATAGATGAAAAA TAAAAAACTTCCTA AATCGA TAGGAAGTTCTTTA TGTAATCTTATTTAG TERM 1477 1002189 - 1002208 + r 71 -6.5 -4.17416 | opp_overlap 1002182 1002189, overlap 1002182 ATGAAAAATAAAAAA CTTCCTA AATCGA TAGGAAG TTCTTTATGTAATCT TERM 1478 1002208 - 1002189 - R 93 -6.5 -5.95286 | opp_overlap 1002189 1002182, overlap 1002182 ATGAAAAATAAAAAA CTTCCTA AATCGA TAGGAAG TTCTTTATGTAATCT CLK_0278 1002535 - 1002227 - | putative transcriptional regulator TERM 1479 1002594 - 1002582 - H 72 -6.3 -4.4009 | opp_overlap 1002569 1002568 1002582 1002580 GTTTACTTGACAAAA GTAAG TTA CTTAC TATATTATACCAATA CLK_0279 1002663 - 1003292 + | nitroreductase family protein CLK_0280 1003656 - 1005098 + | lipase TERM 1480 1005154 - 1005117 - T 100 -14.5 -3.65071 | opp_overlap 1005122 1005152, overlap 1005122 GATGAAATAATAAGA TAAAACTAGCTTATCAT ACTT ATGATAAGCTAGTTTTT TATACTAAAATTCAC TERM 1481 1005149 - 1005122 - T 100 -14.4 -4.83518 | opp_overlap 1005122, overlap 1005117 AATAATAAGATAAAA CTAGCTTATCAT ACTT ATGATAAGCTAG TTTTTTATACTAAAA TERM 1482 1005122 - 1005149 + T 100 -14.4 -5.31275 | opp_overlap 1005117 1005122 AATAATAAGATAAAA CTAGCTTATCAT ACTT ATGATAAGCTAG TTTTTTATACTAAAA oxdD 1006678 - 1005470 - | oxalate decarboxylase TERM 1483 1006920 - 1006947 + G 100 -11.4 -4.08216 | opp_overlap 1006920 GTCAAATAAAACAAA GTTGTGGAAGGG GTAA TTCTTCCACAAC TTTTACAGCAAATAA TERM 1484 1006947 - 1006920 - g 100 -10 -4.96996 | opp_overlap 1006920 GTCAAATAAAACAAA GTTGTGGAAG GGGTAATT CTTCCACAAC TTTTACAGCAAATAA CLK_0282 1006811 - 1007014 + | hypothetical protein CLK_0283 1007621 - 1007043 - | decarboxylase family protein CLK_0284 1008134 - 1007679 - | hypothetical protein TERM 1485 1009057 - 1009047 - g 83 -3.2 -5.68438 | CTATTAAAGAAAAAA TCCC AGA GAGA ATTATGGGCATAGCA CLK_0285 1008248 - 1009135 + | LysR family transcriptional regulator CLK_0286 1009533 - 1009979 + | acetyltransferase TERM 1486 1010033 - 1010066 + T 75 -7.5 -3.98159 | opp_overlap 1010027, overlap 1010044 AATAATTTAGTTGAA GCATCGTATTATTCA AAGC TGAATTTTACGGTGC TTTCATCTTGTAATA CLK_0287 1010758 - 1010069 - | HAD family hydrolase TERM 1487 1010404 - 1010420 + g 84 -9.5 -3.75418 | opp_overlap 1010403 1010407, overlap 1010398 1010407 CATTAGTTACTATAG CAAGTCT GTA AGACTTG TTTAGAGTTTCTATA CLK_0288 1011418 - 1010951 - | hypothetical protein CLK_0289 1011851 - 1011423 - | hypothetical protein TERM 1488 1011671 - 1011687 + g 78 -3.1 -5.54885 | TAGCAGGTATTTTAT TAAATTT AGG AAGTTTA TTTTTTCTTACTATT TERM 1489 1011926 - 1011911 - H 72 -7.6 -3.63276 | opp_overlap 1011913 TTATAACAATTAGAA CATGAC ATTA GTCATG TTAGGAGGTTTTATG CLK_0290 1011939 - 1012628 + | hypothetical protein TERM 1490 1012770 - 1012795 + T 100 -9.1 -5.27335 | opp_overlap 1012768, overlap 1012794 ATAATTAAATTTATG GAGAGTGTACA TAAT TTTACACTCTC TTTTTATTTAAGAAG CLK_0291 1013797 - 1012913 - | LysR family transcriptional regulator TERM 1491 1013725 - 1013737 + g 100 -9.1 -4.43859 | opp_overlap 1013725, overlap 1013734 ATTGAGCATACCCAA GCTGC TCT GCAGC TTTTGTAAAGTTGTG TERM 1492 1013737 - 1013725 - G 76 -9.1 -3.14647 | opp_overlap 1013725 1013734 ATTGAGCATACCCAA GCTGC TCT GCAGC TTTTGTAAAGTTGTG CLK_0292 1013960 - 1014463 + | nitroreductase family protein CLK_0293 1014521 - 1015063 + | multimeric flavodoxin WrbA family protein CLK_0294 1015148 - 1015399 + | hypothetical protein CLK_0295 1015412 - 1015549 + | hypothetical protein CLK_0296 1015675 - 1016007 + | antibiotic biosynthesis monooxygenase domain-containing protein TERM 1493 1016021 - 1016048 + T 70 -4.2 -5.0925 | AAAAAATTATTTAAA GAGTAACTTG CCAAAAAA CAGGTTGCTC TTTTTCATTTTAACC TERM 1494 1016200 - 1016162 - T 90 -7.6 -4.91511 | opp_overlap 1016150 1016162, overlap 1016149 ATCTCACCACAAAAA TGTGGAGATTTAGCCA GGCTAAT TGGATAAATTTCCACA TTTTTGTGTTCAAGA TERM 1495 1016162 - 1016200 + T 100 -10.5 -5.0916 | opp_overlap 1016149 1016162, overlap 1016150 ATCTCACCACAAAAA TGTGGAGATTTAGCCAG GCTAA TTGGATAAATTTCCACA TTTTTGTGTTCAAGA CLK_0297 1016723 - 1016253 - | hypothetical protein CLK_0298 1017484 - 1016723 - | hypothetical protein TERM 1496 1017573 - 1017586 + r 76 -2.5 -5.86976 | opp_overlap 1017569 1017573, overlap 1017569 AAATTTAGACATATA TAATT ATAT AATTA TTTTTTATTTTATAC CLK_0299 1018579 - 1018079 - | putative peptide deformylase CLK_0300 1018813 - 1020249 + | GntR family transcriptional regulator TERM 1497 1020935 - 1020922 - g 74 -2.3 -5.54894 | AATTTATCAAAAAAA GAGCG TATT CCCTC AACTCTACACTAGAA CLK_0301 1020330 - 1021457 + | AraC family transcriptional regulator TERM 1498 1021591 - 1021559 - T 71 -7 -3.94648 | opp_overlap 1021559 1021579, overlap 1021554 ATATAAATAACAGAA GAGAACCAAGTCCA GATGA TGGAGGCGGTTCTC CTTCTTATAGTAAGT CLK_0302 1022143 - 1021625 - | nitroreductase family protein TERM 1499 1021808 - 1021773 - G 76 -9.9 -2.78495 | gap 1, overlap 1021770 1021768 GCATTACGAATAGCA CTTGGGT-CAAAATGG CCAAC CCATGTTGTACCCAAG CCAAGTTCAGCAGCT TERM 1500 1022241 - 1022213 - R 72 -4 -5.32599 | gap 1, overlap 1022216 TACAAAACAGAAAAA GAAGTATGC-ACT TTTT AGTAGCATACTTA CCATTAGGAGAGTGT TERM 1501 1022238 - 1022216 - R 71 -5.7 -4.69512 | gap 1, overlap 1022213 AAAACAGAAAAAGAA GTATGC-ACT TTTT AGTAGCATAC TTACCATTAGGAGAG CLK_0303 1023192 - 1022386 - | iron-sulfur cluster-binding protein TERM 1502 1023329 - 1023313 - R 90 -5.9 -5.95539 | opp_overlap 1023313 1023318, overlap 1023318 GCTTAAAGAAAAAAA GACTATT TTA AACAGTC TTTTAAAATGTTATT mraY 1024499 - 1023546 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1503 1024176 - 1024191 + g 88 -3.3 -6.08563 | AATCATTTTTCCTTT TGAAG TTAATC CTTCA TTTTTTTTATGTATT TERM 1504 1025126 - 1025116 - g 89 -4 -5.86465 | overlap 1025108 AATAACACAAAAAAA TCTT GCT AAGA AAATAGGTGTTTCAG CLK_0305 1024916 - 1025776 + | putative DNA-binding protein TERM 1505 1025864 - 1025876 + F 70 -4.1 -5.22039 | overlap 1025845 AGGCTTTGATATAAC TAGCC TAA GGTTA TTTTTTGGATTTAAA CLK_0306 1025996 - 1026376 + | Rrf2 family protein TERM 1506 1026370 - 1026360 - f 82 -2.6 -6.20267 | TTAAAAATAAAAAAA TATT TGA AATA ATCTAAAGTGCCTAA CLK_0307 1026510 - 1027133 + | methyltransferase CLK_0308 1027400 - 1027963 + | TetR family transcriptional regulator CLK_0309 1027986 - 1029077 + | radical SAM domain-containing protein TERM 1507 1029568 - 1029533 - T 71 -5.4 -4.58236 | opp_overlap 1029535 1029538 1029565 1029567, overlap 1029527 1029535 1029538 CATAAAAGATTAAAA GTTAAGGAGAGCATGG TTTC CCACACCCTCCTTATA AATTCTGACAATTTA TERM 1508 1029566 - 1029535 - T 88 -12.4 -2.58362 | opp_overlap 1029535 1029538 1029565, overlap 1029527 1029533 1029538 TAAAAGATTAAAAGT TAAGGAGAGCATGG TTTC CCACACCCTCCTTA TAAATTCTGACAATT TERM 1509 1029563 - 1029538 - T 82 -9.7 -3.41195 | opp_overlap 1029538 1029535, overlap 1029535 1029533 AAGATTAAAAGTTAA GGAGAGCATGG TTTC CCACACCCTCC TTATAAATTCTGACA CLK_0310 1030019 - 1029564 - | hypothetical protein CLK_0311 1031303 - 1030131 - | MerR family transcriptional regulator CLK_0312 1031495 - 1031632 + | hypothetical protein CLK_0313 1031905 - 1032603 + | putative propanediol utilization protein PduB CLK_0314 1032938 - 1033144 + | hypothetical protein TERM 1510 1033201 - 1033232 + F 88 -5.2 -5.88061 | gap 1, opp_overlap 1033204 TAATGTAATAAAAAA TAGTAGCACCCAGCT GCG AGTAGGG-GCTATTA TTTTTTTGGTTTTTT TERM 1511 1034711 - 1034701 - g 76 -2.6 -5.55698 | GACAATGGAAAAAAA TATT TAG AATA TCCAGCAAAAATTAT CLK_0315 1033654 - 1034766 + | choloylglycine hydrolase CLK_0316 1034839 - 1035708 + | AraC family transcriptional regulator CLK_0317 1035919 - 1036542 + | hypothetical protein TERM 1512 1036609 - 1036641 + T 91 -10.7 -3.60151 | opp_overlap 1036612, overlap 1036612 1036612 CTAAATCTTATTAGC AAACTTCTAAGGAGT TTT ACTCCTTAGAAGTCA TTATCCTTTAGGGGA TERM 1513 1036638 - 1036612 - T 100 -16.8 -3.79519 | opp_overlap 1036609 1036612 1036612 AATCTTATTAGCAAA CTTCTAAGGAGT TTT ACTCCTTAGAAG TCATTATCCTTTAGG TERM 1514 1036612 - 1036638 + T 100 -16.8 -2.92144 | opp_overlap 1036612, overlap 1036609 1036612 AATCTTATTAGCAAA CTTCTAAGGAGT TTT ACTCCTTAGAAG TCATTATCCTTTAGG CLK_0318 1038378 - 1037026 - | FAD-dependent oxidase TERM 1515 1037477 - 1037526 + g 82 -8.7 -4.0274 | TTAAAAGGTAATGGT GTTCC-TGGCTGTGGGGCAGCAG TTAGCT CTGCAGCTTC-TAGCCAAGGAAC TTCTTTAATGGTCAC CLK_0319 1038624 - 1038776 + | hypothetical protein CLK_0320 1038828 - 1038968 + | hypothetical protein TERM 1516 1039146 - 1039110 - T 75 -9.7 -2.6547 | opp_overlap 1039110, overlap 1039109 1039115 AAATATAGGTATAAG TAAAAGGAGAATAGCTT AAT AAAATATCCTCCTTTTA TATTACTTATGGTGC CLK_0321 1040385 - 1039153 - | peptidyl-arginine deiminase TERM 1517 1041449 - 1041461 + G 75 -4.1 -5.3321 | overlap 1041450 ATTATATTAATTTTT TCATG GCT CATGG TTTTTATTGTTGGTT TERM 1518 1041501 - 1041515 + G 82 -4.2 -5.6473 | overlap 1041491 TCATTTATCAAATAA GTGGGC AAA GCTTAC TTTTTTTGATATTGT CLK_0323 1041320 - 1042183 + | DMT family permease CLK_0324 1042540 - 1043127 + | hypothetical protein CLK_0325 1043585 - 1043208 - | ErfK/YbiS/YcfS/YnhG family protein TERM 1519 1043273 - 1043253 - G 78 -9.9 -3.08738 | opp_overlap 1043252 1043251, overlap 1043258 AACAAGGTTACTTAA TTCAATAAC TTG GTTATTGAA CATTCGTATACATCC TERM 1520 1043728 - 1043685 - R 100 -9.8 -5.63857 | opp_overlap 1043685 AAAAATTGAAAAAAA TAGATGCAACTACAATAATT TTAT AAGAATTGTAGTAGCATCTA TTTTTTAATTAGCTA TERM 1521 1043685 - 1043728 + r 100 -9.8 -5.28481 | opp_overlap 1043685 AAAAATTGAAAAAAA TAGATGCAACTACAATAATT TTAT AAGAATTGTAGTAGCATCTA TTTTTTAATTAGCTA CLK_0326 1044088 - 1043759 - | hypothetical protein CLK_0327 1044183 - 1044305 + | hypothetical protein CLK_0328 1044660 - 1044352 - | hypothetical protein TERM 1522 1044852 - 1044881 + r 83 -5.9 -5.38549 | opp_overlap 1044852, overlap 1044846 TCTATATATGTTAAA CTAACTTATTATA TTTA TATAGTAAGCTAG TTTTTGTTATTTAAA CLK_0329 1045073 - 1044888 - | acetyltransferase TERM 1523 1045324 - 1045310 - H 76 -4.4 -5.37865 | opp_overlap 1045310 CTAAGAATGAAAAAA TAAATA CAT TATTTA TGAGTTTATGTTTTA CLK_0330 1045324 - 1046157 + | hypothetical protein CLK_0331 1046247 - 1047017 + | hypothetical protein CLK_0332 1047507 - 1048277 + | hypothetical protein TERM 1524 1048422 - 1048370 - T 78 -9.4 -3.08494 | gap 1, opp_overlap 1048370 1048375, overlap 1048375 AAGAACTATAAAGTA GAAAAGGGACT-TCTCATATTGCAT CTTT ATGCATTGTGAGATAGCCCCTTTTA ATTATGGAGTTATTG TERM 1525 1048370 - 1048422 + T 75 -9.4 -2.63367 | gap 1, opp_overlap 1048370 1048375, overlap 1048375 AAGAACTATAAAGTA GAAAAGGGACT-TCTCATATTGCAT CTTT ATGCATTGTGAGATAGCCCCTTTTA ATTATGGAGTTATTG TERM 1526 1048417 - 1048375 - T 93 -9.3 -4.64846 | gap 1, opp_overlap 1048375 1048370, overlap 1048370 CTATAAAGTAGAAAA GGGACT-TCTCATATTGCAT CTTT ATGCATTGTGAGATAGCCCC TTTTAATTATGGAGT TERM 1527 1048375 - 1048417 + T 93 -9.3 -4.49389 | gap 1, opp_overlap 1048370 1048375, overlap 1048370 CTATAAAGTAGAAAA GGGACT-TCTCATATTGCAT CTTT ATGCATTGTGAGATAGCCCC TTTTAATTATGGAGT CLK_0333 1049483 - 1048458 - | ornithine cyclodeaminase (OCD) TERM 1528 1048760 - 1048774 + g 82 -7.2 -4.7254 | CCATATAAAGAACTT CTGAAT CTA ATTCAG TTTTTCCTGGGCAAT TERM 1529 1049720 - 1049707 - R 75 -3.9 -5.63012 | AAAAATAAAGAAAAA CATAT TGTA ATATG AAAAAATAAGGTTAT TERM 1530 1049930 - 1049886 - R 80 -9.8 -2.84955 | gap 1, opp_overlap 1049885 1049884 1049893, overlap 1049893 AGAATTATTAGCAGA TTACAAATGTATACTAAATAA TAAT TTAATT-GTATACATTTGTAA AATTGGTTTCAAAAT TERM 1531 1050057 - 1050020 - R 81 -7.1 -4.81685 | opp_overlap 1050020 1050025 AGGAAGTATTAAAAA CAAAACCGCATTATTCA AATT TGAATTTTGTGGTTTTG TTATGTAGTAATTAA TERM 1532 1050020 - 1050057 + r 83 -9.3 -3.57731 | opp_overlap 1050020, overlap 1050025 AGGAAGTATTAAAAA CAAAACCGCATTATTCA AATT TGAATTTTGTGGTTTTG TTATGTAGTAATTAA CLK_0334 1050969 - 1050085 - | drug/metabolite exporter family protein CLK_0335 1051135 - 1051695 + | DNA-binding protein TERM 1533 1052023 - 1052033 + G 75 -4 -5.18715 | TTTTAATGCCAGTTT TTTC AGT GAAA TTTTATTCTTTTTAT TERM 1534 1052132 - 1052150 + G 74 -6.8 -4.29119 | overlap 1052129 CAAAATATATGCTAT TCCTGTTA TAT TAATAGGA TTATTTATTATAATG TERM 1535 1053296 - 1053284 - g 72 -6.3 -4.29929 | AGGAAATCTAATAAA TGTAG GTT CTACA GGAAAAGAAGAAAAT CLK_0336 1051941 - 1053548 + | hypothetical protein TERM 1536 1053583 - 1053561 - f 72 -3.6 -5.30575 | opp_overlap 1053569 1053573, overlap 1053569 1053573 TAAAAACTCAAAAAA TTTTAAAATA AAG TGTTTTAAAA TAAAATATTTAAGAC TERM 1537 1053569 - 1053604 + F 86 -8 -4.76892 | gap 1, opp_overlap 1053561 1053569 1053573, overlap 1053573 CAAAAAATTTTAAAA TAAAGTGTTTTAAAATA AAA TA-TTTAAGACACTTTA TTTTTGGGTTCATAT TERM 1538 1053573 - 1053600 + F 70 -4.4 -4.91473 | gap 1, opp_overlap 1053561 1053573 1053569, overlap 1053569 AAATTTTAAAATAAA GTGTTTTAAAATA AAA TA-TTTAAGACAC TTTATTTTTGGGTTC CLK_0337 1053834 - 1054031 + | HTH DNA-binding protein CLK_0338 1054034 - 1054447 + | hypothetical protein CLK_0339 1054642 - 1055130 + | putative acetyltransferase TERM 1539 1055140 - 1055167 + T 100 -17.2 -3.98075 | opp_overlap 1055143 1055147, overlap 1055143 ATTTAGATTGTAATT TAAGGAAGCTGC CTGT GCAGCTTCCTTA TTATTTAGGTCATAT TERM 1540 1055143 - 1055164 + T 100 -14.5 -4.10744 | opp_overlap 1055143 1055147, overlap 1055140 TAGATTGTAATTTAA GGAAGCTGC CTGT GCAGCTTCC TTATTATTTAGGTCA TERM 1541 1055164 - 1055143 - T 100 -14.5 -3.1875 | opp_overlap 1055140 1055143, overlap 1055147 TAGATTGTAATTTAA GGAAGCTGC CTGT GCAGCTTCC TTATTATTTAGGTCA TERM 1542 1055160 - 1055147 - T 74 -8.1 -3.4052 | opp_overlap 1055143 1055140, overlap 1055143 TTGTAATTTAAGGAA GCTGC CTGT GCAGC TTCCTTATTATTTAG CLK_0340 1057560 - 1055200 - | ABC transporter, ATP-binding/permease protein TERM 1543 1056872 - 1056908 + g 70 -6.2 -4.13767 | gap 1, overlap 1056876 TTATAATCGTTTGAG TTATTTTCTGATACAAA TGGA TTGGTATCAGAA-ATAA TTTTACCATCGGAAA TERM 1544 1056876 - 1056905 + g 76 -9.5 -3.09831 | overlap 1056872 AATCGTTTGAGTTAT TTTCTGATACAAA TGGA TTGGTATCAGAAA TAATTTTACCATCGG TERM 1545 1057706 - 1057758 + H 100 -12.2 -4.07562 | gap 1, opp_overlap 1057706 1057707 1057709 1057735, overlap 1057707 1057710 TACGTCCCTGGATAA C-GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCTTCTGAAGCCAAGAACTCTG TTTATATGCAGTTTA TERM 1546 1057757 - 1057706 - H 93 -12.4 -3.28924 | opp_overlap 1057706 1057707 1057710, overlap 1057707 1057709 1057735 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCTTCTGAAGCCAAGAACTCT GTTTATATGCAGTTT TERM 1547 1057707 - 1057756 + H 100 -15.9 -3.62348 | opp_overlap 1057706 1057707 1057709 1057735, overlap 1057706 1057710 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCTTCTGAAGCCAAGAACTC TGTTTATATGCAGTT TERM 1548 1057756 - 1057707 - H 100 -15.9 -2.57211 | opp_overlap 1057707 1057706 1057710, overlap 1057706 1057709 1057735 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCTTCTGAAGCCAAGAACTC TGTTTATATGCAGTT TERM 1549 1057754 - 1057709 - H 91 -12.7 -2.82623 | opp_overlap 1057707 1057706 1057710, overlap 1057707 1057706 1057735 GTCCCTGGATAACGA TTTCTAAGCTTCAGAGGGAGT AAAA ACTCCTTCTGAAGCCAAGAAC TCTGTTTATATGCAG TERM 1550 1057710 - 1057753 + H 100 -16.2 -2.62495 | opp_overlap 1057709 1057707 1057706 1057735, overlap 1057707 1057706 TCCCTGGATAACGAT TTCTAAGCTTCAGAGGGAGT AAAA ACTCCTTCTGAAGCCAAGAA CTCTGTTTATATGCA TERM 1551 1057934 - 1057921 - g 76 -5.3 -5.11063 | AGTACTTAATAAAAA TGGAT ATAA ATCCA TTGAAGCTAAAGATG CLK_0341 1057850 - 1058521 + | DNA-binding response regulator TERM 1552 1058780 - 1058764 - g 72 -6.6 -4.1822 | TCTGATCTTAACAAA GCAACT AAAGA AGTTGC TAAGGGAAATTTTAA CLK_0342 1058521 - 1059549 + | sensor histidine kinase CLK_0343 1059841 - 1060449 + | BioY family protein TERM 1553 1060513 - 1060539 + F 82 -5.3 -5.626 | ATGTAATTTTATAAA CTATTAAGTGT ATTTC ATACTTAGTAG TTTTTTTATCCGATG TERM 1554 1060677 - 1060638 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1060645, overlap 1060641 1060642 1060644 ATTTTTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGTGGG TERM 1555 1060672 - 1060642 - f 79 -9.8 -2.75769 | opp_overlap 1060645, overlap 1060641 1060638 1060644 TTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 1556 1060645 - 1060669 + F 90 -10.1 -3.71552 | opp_overlap 1060644 1060642 1060641 1060638 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 1557 1061805 - 1061792 - g 76 -5.3 -5.05782 | opp_overlap 1061796, overlap 1061796 ATTTATTCTAAAAAA CCTAT TCCA ATAGG AATGATTAAACTTAA CLK_0344 1060844 - 1062556 + | hypothetical protein TERM 1558 1062568 - 1062604 + F 73 -5.3 -4.86001 | GTAGATTATAATTAA TATAGGTTACTAAGTAT ATT ATTATTGGTAGCCTATA TTTTTATCACATGAT CLK_0345 1062898 - 1063443 + | acetyltransferase TERM 1559 1064847 - 1064831 - g 76 -9.5 -3.19169 | overlap 1064829 AAGGAGAATTTAATA TACCCAA ATA TTGGGTA AGAGGTATGAAAGAT CLK_0346 1063522 - 1065129 + | putative LexA repressor TERM 1560 1065186 - 1065148 - f 87 -10.6 -3.15677 | opp_overlap 1065148 TACATAATTATTGAA CTGTCTTATATTTGTTAT AAT ATAATAAATATAAGGCAG TTTTTTATTAGTATA TERM 1561 1065148 - 1065186 + F 100 -15 -5.5353 | opp_overlap 1065148 TACATAATTATTGAA CTGTCTTATATTTGTTAT AAT ATAATAAATATAAGGCAG TTTTTTATTAGTATA cobU 1065407 - 1065964 + | cobinamide kinase / cobinamide phosphate guanyltransferase CLK_0348 1066053 - 1066979 + | hypothetical protein CLK_0349 1066988 - 1067473 + | hypothetical protein tipA 1068347 - 1067583 - | transcriptional activator TipA TERM 1562 1068950 - 1068966 + H 74 -5.9 -4.60041 | opp_overlap 1068950 AAAAGGAATATAATA TAGGTGT AGT ATACCTA TTTTTAACAATGCAT TERM 1563 1069013 - 1068978 - H 76 -9.2 -2.77895 | opp_overlap 1068981, overlap 1068977 1068981 CCTATTTTTAACAAT GCATTGGCTATAAACT CTAA AGTTTATAGCCAATTT TTATATTGAAAAATA TERM 1564 1069010 - 1068981 - H 100 -15.3 -2.65808 | opp_overlap 1068981, overlap 1068978 1068977 ATTTTTAACAATGCA TTGGCTATAAACT CTAA AGTTTATAGCCAA TTTTTATATTGAAAA TERM 1565 1068981 - 1069010 + H 100 -15.3 -5.0916 | opp_overlap 1068978 1068977 1068981 ATTTTTAACAATGCA TTGGCTATAAACT CTAA AGTTTATAGCCAA TTTTTATATTGAAAA cobQ 1069051 - 1070532 + | cobyric acid synthase CobQ TERM 1566 1071384 - 1071374 - g 74 -5.4 -4.8543 | CAAGTGGTAGAAAAA CCTA CTA TAGG AGATAAGATAAAAGA cobD 1070534 - 1071505 + | cobalamin biosynthesis protein CobD TERM 1567 1072122 - 1072105 - g 74 -7.1 -3.90608 | AAACAGAAGGAATAA TATTAGG AAAT CCTAATA ATCCTAATGGATCAG CLK_0353 1071648 - 1072736 + | aminotransferase family protein TERM 1568 1073126 - 1073116 - g 72 -5.4 -4.71382 | ATAAGGATTTAAAAA TGCT ATT AGCA GTAGTTGCAGCCTAT cbiM 1072920 - 1073639 + | cobalamin biosynthesis protein CbiM cbiN 1073643 - 1073942 + | cobalt transport protein TERM 1569 1074021 - 1073971 - gf 75 -8.7 -3.2241 | gap 1, opp_overlap 1073974 1073987, overlap 1073958 1073970 1073974 CATCCTTTAGAAAAG GCAGTTTTGAGTATAATCCCAA TTGTAATT TTGGGATT-TACTCAAAACTAT ATAATCGTTTTTTGC TERM 1570 1074018 - 1073974 - gf 100 -12.6 -2.80077 | gap 1, opp_overlap 1073974 1073987, overlap 1073971 1073970 CCTTTAGAAAAGGCA GTTTTGAGTATAATCCCAA TTGTAATT TTGGGATT-TACTCAAAAC TATATAATCGTTTTT TERM 1571 1073974 - 1074018 + GF 100 -12.6 -3.01146 | gap 1, opp_overlap 1073971 1073970 1073974, overlap 1073987 CCTTTAGAAAAGGCA GTTTTGAGTATAATCCCAA TTGTAATT TTGGGATT-TACTCAAAAC TATATAATCGTTTTT TERM 1572 1074102 - 1074089 - gf 86 -2.5 -6.04419 | AAAATAATAAAAAAA TATTT ACAA AAATA ACTCTAGAGGTAACA TERM 1573 1074535 - 1074546 + GF 71 -3 -5.23316 | AGAGATTTTGATTTT TCTT ATAT AAGA TTTTTTAGTATACTC cbiQ 1073905 - 1074606 + | cobalt ABC transporter, permease protein CbiQ CLK_0357 1075022 - 1075669 + | precorrin-2 dehydrogenase hemC 1075638 - 1076510 + | porphobilinogen deaminase TERM 1574 1077040 - 1077024 - g 73 -3.7 -5.20222 | ATGAAATAAATAAAA TGCTAGT TAA ATTAGCA AAAGAAGGCCATATT CLK_0359 1076813 - 1078273 + | uroporphyrinogen III synthase/methyltransferase TERM 1575 1078329 - 1078353 + F 71 -8.1 -2.95656 | opp_overlap 1078328 1078333, overlap 1078333 TAATAATTAAGCGAT TAAACTATAAA ATC TTTGTAGTTTA TATATAAATTCAATT hemB 1078403 - 1079377 + | delta-aminolevulinic acid dehydratase TERM 1576 1079447 - 1079401 - f 100 -14 -3.55801 | opp_overlap 1079406 1079408 1079409 ATGAATTGGTTTAAA GTTGAGGGTGGAATTTTTTCAT TTC ATGAAAAAATTCCACTCTGTAC TCTAAATTAAAGAGG TERM 1577 1079406 - 1079442 + F 100 -19.1 -2.87522 | opp_overlap 1079401, overlap 1079408 1079409 TTGGTTTAAAGTTGA GGGTGGAATTTTTTCAT TTC ATGAAAAAATTCCACTC TGTACTCTAAATTAA TERM 1578 1079408 - 1079440 + F 100 -18.1 -2.98491 | opp_overlap 1079401, overlap 1079406 1079409 GGTTTAAAGTTGAGG GTGGAATTTTTTCAT TTC ATGAAAAAATTCCAC TCTGTACTCTAAATT cobB 1079470 - 1080792 + | cobyrinic acid a,c-diamide synthase CLK_0362 1080950 - 1081372 + | glyoxalase family protein cobH 1081434 - 1082060 + | precorrin-8X methylmutase CLK_0364 1082204 - 1082067 - | hypothetical protein CLK_0365 1082226 - 1082756 + | acetyltransferase TERM 1579 1082926 - 1082911 - f 73 -3.4 -5.45652 | opp_overlap 1082894, overlap 1082894 ATTTTGAAGAAAAAA TAAATT GTTC AATTTA CGATGTACTTCCTAA CLK_0366 1083035 - 1083799 + | beta-lactamase domain-containing protein TERM 1580 1084445 - 1084455 + G 86 -5.4 -5.60993 | opp_overlap 1084443 1084445 AGAGGAGTTAAAAGA CCAT ACG ATGG TTTTTTTCTAAGAGC CLK_0367 1084151 - 1084885 + | hypothetical protein CLK_0368 1085051 - 1085734 + | membrane-associated MerR family transcriptional regulator CLK_0369 1085802 - 1086230 + | acetyltransferase TERM 1581 1087003 - 1086968 - g 83 -10.2 -3.25358 | opp_overlap 1086968 1086996, overlap 1086966 1086993 TGAAGAAAAATTAGA TTTTAATAAAATTCAT ACTA ATAAATTTTATTAAAA AAATTAATATGTTAA CLK_0370 1086480 - 1087001 + | nitroreductase family protein CLK_0371 1087218 - 1087751 + | hypothetical protein CLK_0372 1087853 - 1088296 + | hypothetical protein cbiD 1088309 - 1089388 + | cobalamin biosynthesis protein CbiD cbiE 1089564 - 1090235 + | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit CLK_0375 1090446 - 1090751 + | hypothetical protein cbiT 1090897 - 1091472 + | precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit CLK_0377 1091472 - 1091903 + | hypothetical protein CLK_0378 1092227 - 1092099 - | hypothetical protein CLK_0379 1092417 - 1092608 + | hypothetical protein CLK_0380 1092766 - 1093218 + | hypothetical protein CLK_0381 1093275 - 1093619 + | hypothetical protein CLK_0382 1093687 - 1094235 + | acetyltransferase CLK_0383 1094285 - 1094677 + | hypothetical protein cobI 1094768 - 1095484 + | precorrin-2 C20-methyltransferase cobM 1095772 - 1096530 + | precorrin-4 C11-methyltransferase CLK_0386 1096535 - 1097701 + | hypothetical protein cobJ 1097835 - 1098566 + | precorrin-3B C17-methyltransferase cobK 1098743 - 1099510 + | precorrin-6x reductase CLK_0389 1099595 - 1100083 + | hypothetical protein TERM 1582 1100143 - 1100129 - f 70 -4.4 -4.98436 | opp_overlap 1100131 TTAAGATTATAAAAA TATATA AAG TATATA CTTAAGATATGGTGA cbiK 1100247 - 1101029 + | anaerobic sirohydrochlorin cobaltochelatase TERM 1583 1101182 - 1101171 - g 74 -3 -5.37593 | opp_overlap 1101179, overlap 1101179 TTTGAAAGTAAAAAA GAAA AAAA TTTC TATAGAAATATTAAA TERM 1584 1101190 - 1101179 - g 89 -3 -6.28401 | opp_overlap 1101179, overlap 1101171 TAAAAAAGAAAAAAA TTTC TATA GAAA TATTAAAGCAAATAA CLK_0391 1101042 - 1101872 + | putative kinase TERM 1585 1102166 - 1102196 + G 71 -7.8 -3.53224 | TTCTTTAAGGGCAGT TTGTTCAGGAAAAA AAG TTTTTTTTGGACAA TTTACAAAGGGAATG cobO 1102077 - 1102598 + | cob(I)alamin adenosyltransferase TERM 1586 1102743 - 1102722 - f 72 -8.9 -2.70717 | overlap 1102719 AAGATATTAAAGTTA TGCTTATTA TAAA TAATAAGCA GAGAAGTAATTTGTT CLK_0393 1102851 - 1103540 + | Crp/FNR family transcriptional regulator TERM 1587 1103554 - 1103533 - f 85 -10.3 -3.03635 | opp_overlap 1103533 CAAAGTTTTTTAAGA GTATGTGAT TTTC ATCACATAC TTTTTTTTGTATGCA TERM 1588 1103533 - 1103554 + F 100 -10.3 -6.02914 | opp_overlap 1103533 CAAAGTTTTTTAAGA GTATGTGAT TTTC ATCACATAC TTTTTTTTGTATGCA TERM 1589 1103905 - 1103890 - g 70 -6.2 -4.04806 | TTTTACAGGAAATAA TATGGT TATG ACCATA GGAACATTAAATAGG CLK_0394 1103630 - 1104394 + | formate/nitrite transporter family protein asrA 1104414 - 1105442 + | anaerobic sulfite reductase, subunit A TERM 1590 1106176 - 1106188 + G 70 -4.1 -4.96646 | overlap 1106177 GATACCTATATTTGT TTGGA AGG TCCAG TTTTTAATTATGTAA asrB 1105429 - 1106226 + | anaerobic sulfite reductase, subunit B arsC 1106239 - 1107204 + | anaerobic sulfite reductase, subunit C TERM 1591 1107213 - 1107238 + F 77 -4.8 -5.38047 | opp_overlap 1107207 TAAATAGAATTTTTT TAGAGTATCT AAAACA AGGTGCTCTA TTTTTTATGTAGATA TERM 1592 1107349 - 1107319 - f 90 -7 -5.30616 | TTACTTAAAGAAAAA CCTCTTTTTAATGT TTA AAATTAAAGAGAGG GAGATGATAAAATTG CLK_0398 1107362 - 1108030 + | macrolide export ATP-binding/permease protein MacB CLK_0399 1108017 - 1110347 + | efflux ABC transporter, permease protein CLK_0400 1110394 - 1111080 + | regulatory protein VanR CLK_0401 1111064 - 1112419 + | two component system histidine kinase CLK_0402 1112983 - 1114005 + | putative molybdopterin binding protein TERM 1593 1114227 - 1114212 - f 79 -4.8 -5.5353 | opp_overlap 1114212 TATAGGAATAAAAAA TGATTT AGTA AAATCA ATTATAGAAAAGGAA CLK_0403 1114317 - 1115117 + | putative anion ABC transporter, solute-binding protein CLK_0404 1115137 - 1115919 + | putative anion ABC transporter, permease protein CLK_0405 1115934 - 1116632 + | putative anion ABC transporter, ATP-binding protein CLK_0406 1116616 - 1117344 + | hypothetical protein CLK_0407 1117809 - 1117462 - | hypothetical protein TERM 1594 1118105 - 1118093 - H 73 -3.5 -5.51046 | GAAAGAGATAAAAAA TTATA AAA TATAA TGAACTTAATAAATT CLK_0408 1118134 - 1119153 + | hypothetical protein CLK_0409 1119174 - 1120061 + | ABC transporter, ATP-binding protein TERM 1595 1120360 - 1120374 + G 70 -6.4 -4.15143 | AAGCTAAAGCGATAG CAGCTG GAA TAGCTG TTTCTATAGTTAATT CLK_0410 1120065 - 1120841 + | hypothetical protein TERM 1596 1121075 - 1121093 + F 83 -3.9 -5.9362 | CCACTAAAGTTTATT TACATGT TTATT ACGTGTA TTTTTTTATCTTTTC CLK_0411 1121492 - 1122214 + | DNA-binding response regulator CLK_0412 1122204 - 1123625 + | sensor histidine kinase CLK_0413 1124608 - 1123838 - | iron chelate ABC transporter ATP-binding protein TERM 1597 1123964 - 1123978 + g 75 -4.3 -5.28481 | TTCTACAGGGCCATG GGTAA CTATT TTACC TTTTTTCATTACATA CLK_0414 1125604 - 1124609 - | iron chelate ABC transporter permease protein TERM 1598 1125614 - 1125668 + Gr 100 -13.6 -3.91564 | gap 1, opp_overlap 1125626, overlap 1125622 1125626 AAACAAGGCTATAAT TAATAGAATAAATTTTAAAGTGCAA TTATTT TTGCACTTTAAAATTTGTT-TATTA TTATTCATTCTTATC TERM 1599 1125622 - 1125661 + Gr 100 -13.3 -4.58786 | opp_overlap 1125626, overlap 1125614 1125626 CTATAATTAATAGAA TAAATTTTAAAGTGCAA TTATTT TTGCACTTTAAAATTTG TTTATTATTATTCAT TERM 1600 1125626 - 1125657 + Gr 100 -11.9 -4.79953 | opp_overlap 1125626, overlap 1125622 1125614 AATTAATAGAATAAA TTTTAAAGTGCAA TTATTT TTGCACTTTAAAA TTTGTTTATTATTAT TERM 1601 1125657 - 1125626 - gR 100 -11.9 -4.48583 | opp_overlap 1125626 1125622 1125614 AATTAATAGAATAAA TTTTAAAGTGCAA TTATTT TTGCACTTTAAAA TTTGTTTATTATTAT CLK_0416 1125579 - 1125692 + | hypothetical protein CLK_0415 1126711 - 1125689 - | putative iron chelate uptake ABC transporter, solute-binding protein TERM 1602 1126892 - 1126851 - H 71 -7 -3.92001 | gap 3, opp_overlap 1126858, overlap 1126858 CATAGCATATAAGAA GTATCAACCCATTGCTTTATC ATA GA-AAAGCAATGGGTT-AT-C TAAAATTATTTAATA TERM 1603 1126858 - 1126887 + H 100 -13.1 -3.53307 | gap 1, opp_overlap 1126851 1126858 TATAAGAAGTATCAA CCCATTGCTTTATC ATA GA-AAAGCAATGGG TTATCTAAAATTATT TERM 1604 1126887 - 1126858 - H 100 -13.1 -3.34242 | gap 1, opp_overlap 1126858, overlap 1126851 TATAAGAAGTATCAA CCCATTGCTTTATC ATA GA-AAAGCAATGGG TTATCTAAAATTATT CLK_0417 1127371 - 1127511 + | hypothetical protein TERM 1605 1127818 - 1127870 + T 83 -11.1 -2.65271 | opp_overlap 1127818 1127828 1127831, overlap 1127824 1127828 1127831 TAGGATTTTTATAAG TAATATTAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCATTATTA TACTATAAAGTTATG TERM 1606 1127870 - 1127818 - T 91 -13.3 -2.58861 | opp_overlap 1127818 1127824 1127828 1127831, overlap 1127828 1127831 TAGGATTTTTATAAG TAATATTAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCATTATTA TACTATAAAGTTATG TERM 1607 1127824 - 1127864 + T 93 -10.1 -3.87104 | opp_overlap 1127818 1127828 1127831, overlap 1127818 1127828 1127831 TTTTATAAGTAATAT TAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCA TTATTATACTATAAA TERM 1608 1127828 - 1127860 + T 95 -10.9 -3.59279 | opp_overlap 1127818 1127828 1127831, overlap 1127824 1127818 1127831 ATAAGTAATATTAAA TAATCCAAAGATA TCTTAAC TATCTTTGGATTA TTCATTATTATACTA TERM 1609 1127860 - 1127828 - T 100 -10.9 -3.97812 | opp_overlap 1127828 1127824 1127818 1127831, overlap 1127818 1127831 ATAAGTAATATTAAA TAATCCAAAGATA TCTTAAC TATCTTTGGATTA TTCATTATTATACTA TERM 1610 1127831 - 1127857 + T 78 -8.2 -3.91564 | opp_overlap 1127828 1127818 1127831, overlap 1127828 1127824 1127818 AGTAATATTAAATAA TCCAAAGATA TCTTAAC TATCTTTGGA TTATTCATTATTATA TERM 1611 1127857 - 1127831 - T 79 -8.2 -4.09455 | opp_overlap 1127831 1127828 1127824 1127818, overlap 1127828 1127818 AGTAATATTAAATAA TCCAAAGATA TCTTAAC TATCTTTGGA TTATTCATTATTATA CLK_0418 1128295 - 1127873 - | hypothetical protein TERM 1612 1127998 - 1128008 + g 72 -4 -5.09225 | AATCAGGAATTTTCT TGAT AAA ATCA TTTTTTAAATCAAAT TERM 1613 1129082 - 1129072 - g 70 -5.4 -4.55798 | GAGTTTAAATCAAAA CCAT TAG ATGG AAGTGGGTGGATAGA CLK_0419 1128418 - 1129350 + | hypothetical protein TERM 1614 1129495 - 1129551 + T 90 -10.5 -3.45434 | opp_overlap 1129504 1129521, overlap 1129497 1129521 AAAGATCAATATGCT TTGACACAATCTAAGAAATTTAATAGT AGT ATAACTATATTTCTTAGATTGTGTCTA TTATAATACGTTATT TERM 1615 1129497 - 1129549 + T 100 -13.1 -3.29161 | opp_overlap 1129504 1129521, overlap 1129495 1129521 AGATCAATATGCTTT GACACAATCTAAGAAATTTAATAGT AGT ATAACTATATTTCTTAGATTGTGTC TATTATAATACGTTA CLK_0420 1130468 - 1129590 - | LysR family transcriptional regulator TERM 1616 1130287 - 1130271 - G 82 -10.9 -2.62396 | opp_overlap 1130268 1130263 CATTCTTTTACAGTA GGGAAGA AAT TCTTCCC CAGCTATAGTTAATC TERM 1617 1131471 - 1131457 - g 75 -5.7 -4.69664 | opp_overlap 1131441 1131458, overlap 1131441 1131459 GAGATTACTCAAAAA CTCCT TCCAT AGGAG GCGATACTGTTACAT CLK_0421 1130589 - 1131707 + | threonine synthase CLK_0422 1132017 - 1132481 + | putative nitroimidazole resistance protein TERM 1618 1132805 - 1132834 + T 86 -8 -4.75776 | opp_overlap 1132805 AGGTAAAAATAAAAA CTCCAGTAAAAA ATAAGG TGTTTACTGGAG TTTTTAGGTTAAATT TERM 1619 1132834 - 1132805 - T 100 -8 -5.63236 | opp_overlap 1132805 AGGTAAAAATAAAAA CTCCAGTAAAAA ATAAGG TGTTTACTGGAG TTTTTAGGTTAAATT dhaKL 1134652 - 1132892 - | dihydroxyacetone kinase, subunit I/II dhaD 1135793 - 1134663 - | glycerol dehydrogenase TERM 1620 1135895 - 1135911 + r 82 -4.5 -5.71983 | opp_overlap 1135895 1135898, overlap 1135884 TACATGACAAAAAAT TATGATT AAA AATCGTA TTTTTTTGTGGTTGA CLK_0425 1137394 - 1136357 - | AraC family transcriptional regulator TERM 1621 1137620 - 1137592 - H 75 -7.7 -3.99878 | opp_overlap 1137592 1137595 ATATATAATATTAAA TCATAACTCAAAA TGT TTTTAAGTTATAA TTTGCTTATTAAAAA TERM 1622 1137656 - 1137638 - H 73 -3.2 -5.52384 | TGCTTATTAAAAAAA TCTATATA CAT TATATTGA AATTAATATTTATAG CLK_0426 1137774 - 1137947 + | hypothetical protein CLK_0427 1137982 - 1138446 + | acetyltransferase CLK_0428 1138650 - 1139093 + | acetyltransferase CLK_0429 1139248 - 1139841 + | hypothetical protein TERM 1623 1139928 - 1139886 - f 70 -3.8 -5.25803 | gap 2, opp_overlap 1139879, overlap 1139888 1139889 AATTTCCAGAAAAAA TAG-TTTTTCTTG-TGTTCA GAGAT CGAACAACAAGAAAAAGCCA AAGAAAAACATATTG CLK_0430 1140070 - 1140915 + | aldo/keto reductase family oxidoreductase CLK_0431 1141016 - 1141342 + | TfoX domain-containing protein TERM 1624 1141748 - 1141719 - g 73 -9.5 -2.69647 | opp_overlap 1141723, overlap 1141716 AATGGGGATAGAGCA GTATTTGCTTGAA GTAA TTCAATCAAATAC ATCTGCACTTCAGCT TERM 1625 1142075 - 1142064 - g 74 -3 -5.34309 | AGCAGTAAATAAAAA TTAC AGAC GTAA AGGAATTGCAAGAAG CLK_0432 1141384 - 1142238 + | acetyltransferase TERM 1626 1142335 - 1142360 + F 93 -7 -5.80817 | opp_overlap 1142335 AATACATTTATATTA GCTTTATGAT GAAAAA GTCATAAAGC TTTTTTTATATTGAC TERM 1627 1142379 - 1142421 + F 72 -8.8 -2.72049 | opp_overlap 1142379 1142381 1142404, overlap 1142379 1142367 1142381 1142381 1142383 TTTTATATTGACATA TACAGTTAGACTGTATAT AGTAAAA GTATATAGTTTAACTGTA TACTTAAAAAATATA CLK_0433 1142452 - 1142766 + | PadR family transcriptional regulator CLK_0434 1142840 - 1143397 + | hypothetical protein CLK_0435 1143539 - 1143841 + | hypothetical protein add 1145288 - 1144281 - | adenosine deaminase TERM 1628 1146029 - 1145994 - H 82 -8.7 -4.09586 | opp_overlap 1145997 ATATAAGGAAAAAGA TTATCTTAAGATTAA GATTAA TTAATCTTAAAATAA ATGTGTGAACAAGCT TERM 1629 1146047 - 1146057 + H 71 -6.8 -4.11304 | GTGTGAACAAGCTGT CCGT TTC ACGG TTGTTTATGACTTAA CLK_0437 1146146 - 1148314 + | putative phage infection protein TERM 1630 1148329 - 1148356 + F 87 -11.4 -3.05268 | opp_overlap 1148321 AACATAGTTCTTGGC TTTAGAGGGAGT TTTT ACTCCCACTAAA TGTTAGAAATCGTTA TERM 1631 1149377 - 1149363 - g 72 -4.4 -5.05116 | overlap 1149355 GCACAAATAATAAAA TTAATA GCA TATTAA CAAATTTAAAAGAAT CLK_0438 1148522 - 1150681 + | putative phage infection protein TERM 1632 1150831 - 1150799 - f 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT TERM 1633 1151063 - 1151089 + F 100 -16.8 -2.69468 | opp_overlap 1151063 1151066 1151071, overlap 1151066 1151071 ACTCTGTACTCTAAA TAAGGAAAGTGC GTG GCACTTTCCTTA TAATATGTAAAAATA TERM 1634 1151089 - 1151063 - f 100 -16.8 -3.60098 | opp_overlap 1151063 1151066 1151071, overlap 1151066 1151071 ACTCTGTACTCTAAA TAAGGAAAGTGC GTG GCACTTTCCTTA TAATATGTAAAAATA TERM 1635 1151066 - 1151086 + F 100 -14.1 -3.49777 | opp_overlap 1151063 1151066 1151071, overlap 1151063 1151071 CTGTACTCTAAATAA GGAAAGTGC GTG GCACTTTCC TTATAATATGTAAAA TERM 1636 1151086 - 1151066 - f 100 -14.1 -3.9392 | opp_overlap 1151066 1151063 1151071, overlap 1151063 1151071 CTGTACTCTAAATAA GGAAAGTGC GTG GCACTTTCC TTATAATATGTAAAA TERM 1637 1151081 - 1151071 - f 71 -6.8 -4.14764 | opp_overlap 1151066 1151063 1151071, overlap 1151066 1151063 CTCTAAATAAGGAAA GTGC GTG GCAC TTTCCTTATAATATG TERM 1638 1151071 - 1151081 + F 71 -6.8 -4.03179 | opp_overlap 1151071 1151066 1151063, overlap 1151066 1151063 CTCTAAATAAGGAAA GTGC GTG GCAC TTTCCTTATAATATG TERM 1639 1151781 - 1151765 - g 91 -10.9 -3.79071 | opp_overlap 1151775 TTTATAAGATTTAAA CCTATGG CTA CCATAGG ACATGGATTAATAGG CLK_0439 1151636 - 1152391 + | hypothetical protein TERM 1640 1153963 - 1153951 - g 73 -3.5 -5.20216 | opp_overlap 1153951 TAGAGGATCAAAAAA TAAAA AGC TTTTA TCCTTAGATTTAGAT recQ 1152635 - 1154764 + | ATP-dependent DNA helicase RecQ TERM 1641 1155203 - 1155181 - g 90 -6.4 -5.52347 | AATAAAATGAAAAAA TCTTTAGC TATAAAG GCTAAAGA AGAAAATATAGATGA CLK_0441 1154875 - 1155306 + | ferritin-like diiron domain-containing protein TERM 1642 1155392 - 1155354 - T 84 -9 -4.31412 | AAATATTTACTAAAA GAGGGTGCATGAAAATAA ATT TAATTTTGATGCAACCTC CAAATTTTATAGTAG TERM 1643 1155490 - 1155535 + T 77 -6.9 -4.56969 | opp_overlap 1155489 1155486 1155516, overlap 1155491 CCATCGGATAACCAT TTTCTAAGCTTTATTGGGAGT AAAA ACTCCCTCTGAAGCTCAGAAC TTTGTTTATAAACTT TERM 1644 1155491 - 1155534 + T 90 -10.4 -3.33097 | opp_overlap 1155489 1155486 1155516, overlap 1155490 CATCGGATAACCATT TTCTAAGCTTTATTGGGAGT AAAA ACTCCCTCTGAAGCTCAGAA CTTTGTTTATAAACT CLK_0442 1156094 - 1155549 - | phosphodiesterase TERM 1645 1156461 - 1156451 - H 72 -4 -5.44638 | ATAATAAAAAGAAAA TGAT TAT ATCA ATATTAAATAAAAAT TERM 1646 1156743 - 1156733 - g 74 -5.4 -4.85599 | GGGAGGTTATAAAAA TGAG TAG CTCA CAAAAGAATATATTA CLK_0443 1156732 - 1157115 + | response regulator TERM 1647 1157226 - 1157176 - f 95 -11.6 -3.45134 | gap 1, opp_overlap 1157176 1157178, overlap 1157178 1157194 TTAAGTAACCTATAA TATACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTATT ATTTTGATTGAAAGA TERM 1648 1157176 - 1157227 + F 81 -7.8 -4.4078 | gap 2, opp_overlap 1157176 1157178 1157194, overlap 1157178 TTAAGTAACCTATAA TA-TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTATTA TTTTGATTGAAAGAA TERM 1649 1157224 - 1157178 - f 100 -14.2 -3.29216 | gap 1, opp_overlap 1157178 1157176, overlap 1157176 1157194 AAGTAACCTATAATA TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTA TTATTTTGATTGAAA TERM 1650 1157178 - 1157224 + F 100 -12 -4.32402 | gap 1, opp_overlap 1157176 1157178 1157194, overlap 1157176 AAGTAACCTATAATA TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTA TTATTTTGATTGAAA TERM 1651 1157927 - 1157908 - g 77 -7.2 -4.21994 | opp_overlap 1157908 AAATATATAGATAAA GCTTTAGA GCTT CCTAAAGC TTATCCTTCTAAGAA CLK_0444 1157230 - 1159704 + | hypothetical protein TERM 1652 1159737 - 1159717 - f 78 -4.2 -5.51353 | TAAAAATAAGAAAAA TTTATTTT AGATA AAAATAAA AATGACTATAAAACA TERM 1653 1159810 - 1159845 + F 100 -9.2 -5.42514 | opp_overlap 1159810 1159805 1159802 AGCGAAATAATAAAA GATAGGATAGCATTTT ATTA GGAGTGCTATTCTATC TTTTTTCATTTATAA TERM 1654 1160393 - 1160406 + G 73 -8.1 -3.53012 | ATGCCAATTTTAGAC GCAGC TTCT GCTGC TTTAGAAGGAACGGC TERM 1655 1161061 - 1161045 - g 85 -5.9 -5.35222 | opp_overlap 1161045, overlap 1161047 AAAATGTAGAAAAAA TACCTTT TAA AAAGGCA GTTATAGCATGGTTA TERM 1656 1161059 - 1161047 - g 72 -6.3 -4.28383 | opp_overlap 1161045, overlap 1161045 AATGTAGAAAAAATA CCTTT TAA AAAGG CAGTTATAGCATGGT lctP 1160234 - 1161757 + | L-lactate permease TERM 1657 1162476 - 1162486 + G 72 -5.4 -4.69326 | opp_overlap 1162476, overlap 1162471 TATGCCGCTGAAAAA GCTA ATT TAGC TTTTATATTAAATGT TERM 1658 1162486 - 1162476 - g 70 -5.4 -4.57073 | opp_overlap 1162476 1162471 TATGCCGCTGAAAAA GCTA ATT TAGC TTTTATATTAAATGT TERM 1659 1163024 - 1163012 - g 74 -7.7 -3.78026 | GCTAAAGGGAAAAGA CGCTA AAG TAGCG GTAATACCTGATGGT CLK_0446 1161786 - 1163060 + | hypothetical protein CLK_0447 1163103 - 1163891 + | electron transfer flavoprotein, beta subunit/FixA family protein TERM 1660 1164454 - 1164440 - g 70 -8.6 -2.57252 | overlap 1164439 1164437 CAACAATAGGAAGAT CTCTTG CAC CAAGAG TAGCAGCTAGATTTA CLK_0448 1163923 - 1165125 + | electron transfer flavoprotein, alpha subunit/FixB family protein CLK_0449 1165186 - 1166583 + | putative glycolate oxidase TERM 1661 1166611 - 1166653 + F 93 -7.3 -5.65927 | opp_overlap 1166621 TTTTTAAGTAAAAAA TGGAGAAGTACATGAAT ATTTTTTTA ATTCATGTGTTTCTTCA TTTTTTATTTGCATG CLK_0450 1166849 - 1167565 + | LytTr DNA-binding domain-containing protein TERM 1662 1168715 - 1168696 - g 79 -9.4 -3.48558 | opp_overlap 1168695, overlap 1168692 AGAAATATTAATGAA TGGTAACA GAAT TGTTACCA CTAAGTTAGATAGAA CLK_0451 1167569 - 1168849 + | hypothetical protein TERM 1663 1168855 - 1168886 + F 88 -6.7 -5.47159 | TATTAATTAAAAAGA TAGCAGCAGGATT ATAAAA GATTCTGTTGCTA TTTTTTGTATTAAAA CLK_0452 1169030 - 1169173 + | hypothetical protein CLK_0453 1169173 - 1169757 + | putative AIP processing-secretion protein CLK_0454 1169929 - 1170837 + | putative lipoprotein TERM 1664 1170854 - 1170879 + F 77 -3.3 -5.80248 | opp_overlap 1170854 ATTTATTTATAAAAA GCTATTTGAAT TATT ATTCTTATAGC TTTTTTTGTGTGTTA CLK_0455 1171045 - 1171506 + | MarR family transcriptional regulator CLK_0456 1171508 - 1172053 + | putative cyclase TERM 1665 1172293 - 1172324 + T 95 -11.8 -3.58565 | opp_overlap 1172293, overlap 1172287 TAATAATATTAAAAA CCGCTAATTAAC CCTTAACA GTTAATTAGCGG TTGTCCTATTCTTTA TERM 1666 1172324 - 1172293 - T 100 -12.5 -4.93316 | opp_overlap 1172287 1172293 TAATAATATTAAAAA CCGCTAATTAACC CTTAAC AGTTAATTAGCGG TTGTCCTATTCTTTA CLK_0457 1173537 - 1172353 - | putative aspartate aminotransferase TERM 1667 1173776 - 1173729 - R 81 -8 -4.45083 | opp_overlap 1173734 TTCATATTTATAAAA GCTCCGTCTATTTTAAATATAA TTTT CTATATTTAAAATAGACTTTGC TTTCATGTGTAGATA TERM 1668 1173734 - 1173771 + r 100 -13.2 -4.13341 | opp_overlap 1173729 ATTTATAAAAGCTCC GTCTATTTTAAATATA ATTTTC TATATTTAAAATAGAC TTTGCTTTCATGTGT TERM 1669 1174074 - 1174037 - R 74 -6 -4.56802 | opp_overlap 1174029, overlap 1174029 AAAGAAATATTAAAA TTATTTAATATTAATA TATGCG CACTAATATTAAATAA TGAAAATGGCTTATT TERM 1670 1174420 - 1174391 - R 78 -10.1 -2.57026 | opp_overlap 1174386, overlap 1174390 1174393 TATATTTATATTAAT TAGGCAGCAAGCT GTTA AGTTTGCTACCTA GTCCAATTATGAATA CLK_0458 1175063 - 1174485 - | putative cyclase TERM 1671 1175108 - 1175089 - H 86 -9.4 -3.87149 | opp_overlap 1175089 1175090, overlap 1175090 1175092 CCCATTAAATTCAAA GTAGTTTC CCAG GAAACTAC TTAATAGTATCACTA TERM 1672 1175089 - 1175108 + H 80 -9.4 -3.25223 | opp_overlap 1175089 1175090 1175092, overlap 1175090 CCCATTAAATTCAAA GTAGTTTC CCAG GAAACTAC TTAATAGTATCACTA TERM 1673 1175090 - 1175143 + H 70 -7 -3.74158 | opp_overlap 1175089 1175090 1175092 1175113 1175126, overlap 1175089 1175120 CCATTAAATTCAAAG TAGTTTCCCAGGAAACTACTTAAT AGTATC ACTAAATAGTTTCCTTGTAAACTA TTTAGATATAATTGA TERM 1674 1175143 - 1175090 - H 89 -12.1 -2.91807 | opp_overlap 1175089 1175090 1175120, overlap 1175089 1175092 1175113 1175126 CCATTAAATTCAAAG TAGTTTCCCAGGAAACTACTTAATA GTAT CACTAAATAGTTTCCTTGTAAACTA TTTAGATATAATTGA TERM 1675 1175141 - 1175092 - H 85 -10.3 -3.00419 | opp_overlap 1175089 1175090 1175120, overlap 1175089 1175090 1175113 1175126 ATTAAATTCAAAGTA GTTTCCCAGGAAACTACTTAATA GTAT CACTAAATAGTTTCCTTGTAAAC TATTTAGATATAATT CLK_0459 1175223 - 1175747 + | MarR family transcriptional regulator CLK_0460 1176054 - 1176875 + | MerR family transcriptional regulator TERM 1676 1176894 - 1176926 + F 72 -8.1 -3.28712 | opp_overlap 1176894 TCTAGTAGCTAGAGA CTTTATAATTTAT AAAATAG ATAAATTATAAAG TTATAGAAACAACAA TERM 1677 1177343 - 1177331 - g 71 -5.5 -4.42851 | CTAATAAATTTAAAA GCTCC ATT GAAGC AATAACTACAAGAGT TERM 1678 1177378 - 1177368 - g 75 -4 -5.2112 | overlap 1177372 AAGAGTAGCAAAAAA GAAA GGA TTTC CTAATATAAATCCAG CLK_0461 1177096 - 1177794 + | B3/4 domain-containing protein TERM 1679 1177849 - 1177818 - T 100 -13.2 -3.25494 | opp_overlap 1177817 1177843 TATAACAATATTTAA TCAGGTAGCAAACT ATTG AACTTGCTACCTGA GGTGTTTATCCGGTG aspS 1179390 - 1178101 - | aspartyl-tRNA synthetase TERM 1680 1179444 - 1179413 - H 95 -9.4 -4.87133 | opp_overlap 1179412, overlap 1179416 ACCTCCTAAATAAAA TAAGCCCCTTGAGT AAAA ACCCAAGGGGCAAA ATAATTTGCGGTACC TERM 1681 1179441 - 1179416 - H 100 -15.5 -4.54026 | opp_overlap 1179412, overlap 1179413 TCCTAAATAAAATAA GCCCCTTGAGT AAAA ACCCAAGGGGC AAAATAATTTGCGGT TERM 1682 1179562 - 1179536 - H 100 -10.9 -5.36441 | opp_overlap 1179536, overlap 1179555 TTTCTATATAAAAAA GCCTTCACCCC ATATA GGAGTGAAAGC TTACATTCACGGTAC TERM 1683 1179892 - 1179874 - H 75 -7.6 -3.93719 | ATAATTATAGAATAA TATTAAAC AGT GTTTAATA ACATTACAGTGTTTA TERM 1684 1180403 - 1180393 - g 70 -4 -4.97402 | CAAAATGGAGAAAAA TCTT AGG AAGA TAAAAGCTACAGAAA CLK_0463 1179935 - 1180492 + | hypothetical protein CLK_0464 1180496 - 1181059 + | CDP-alcohol phosphatidyltransferase family protein TERM 1685 1181186 - 1181168 - f 75 -8.2 -3.60214 | overlap 1181169 ATCTTAAGCAGAGAA CCCAAATC TAT GATTTGGA GTGAGTCGCTTACAC TERM 1686 1181185 - 1181169 - f 75 -9.5 -2.75647 | overlap 1181168 TCTTAAGCAGAGAAC CCAAATC TAT GATTTGG AGTGAGTCGCTTACA CLK_0465 1181333 - 1181947 + | TetR family transcriptional regulator CLK_0466 1181963 - 1182451 + | hypothetical protein TERM 1687 1182548 - 1182499 - T 75 -6.7 -4.48869 | gap 1, opp_overlap 1182501 1182503, overlap 1182501 1182503 TAAAAATAATATAAA GATAGGGCCGTCTCAAAATA-GAT TTA ATCGTATTTTGAAACAGCACCATT AATTTATATCTATTT TERM 1688 1182546 - 1182501 - T 84 -9.3 -3.80533 | gap 1, opp_overlap 1182501 1182503, overlap 1182499 1182503 AAAATAATATAAAGA TAGGGCCGTCTCAAAATA-GAT TTA ATCGTATTTTGAAACAGCACCA TTAATTTATATCTAT TERM 1689 1182544 - 1182503 - T 82 -9.7 -3.44851 | gap 1, opp_overlap 1182501 1182503, overlap 1182501 1182499 AATAATATAAAGATA GGGCCGTCTCAAAATA-GAT TTA ATCGTATTTTGAAACAGCAC CATTAATTTATATCT CLK_0467 1183247 - 1182558 - | HAD family hydrolase CLK_0468 1183560 - 1184249 + | cyclic nucleotide-binding domain-containing protein TERM 1690 1184359 - 1184340 - T 73 -6.6 -4.2416 | opp_overlap 1184338 1184340 TAATCCAATAAAGAA TTTCAATA ATAT TATTGAAA TATGTTATAAAATAA CLK_0469 1185143 - 1184559 - | DJ-1/PfpI family protein TERM 1691 1185473 - 1185462 - g 74 -3 -5.47218 | GTTTAGGTAAAAAAA TAGT TTTA ACTA ATGTAGGTCAAAAGT CLK_0470 1185299 - 1186192 + | LysR family transcriptional regulator TERM 1692 1186263 - 1186282 + F 73 -5.8 -4.76963 | opp_overlap 1186265 TTCTTTATTTGCTAA TATGACAT AATG GTGTCATA TTTTATATTATATAA CLK_0471 1186326 - 1187102 + | hypothetical protein TERM 1693 1187208 - 1187175 - f 75 -8.3 -3.60151 | gap 1, opp_overlap 1187184 1187185, overlap 1187194 TCTCCTAAAGGATAA TGACTTCTAA-GGAGT AAA ACTCCCTTTGAAGCCA AGAACTCTGTTTATA CLK_0472 1187627 - 1187836 + | putative ferrous iron transport protein A CLK_0473 1187853 - 1188074 + | ferrous iron transport protein A feoB 1188106 - 1190262 + | ferrous iron transport protein B CLK_0475 1190283 - 1190429 + | hypothetical protein TERM 1694 1190441 - 1190474 + F 100 -11.3 -5.70522 | opp_overlap 1190441 ATAAAAAATAAAAAA GAATCTATTTTCTAA ACAC TTGGGAAATAGATTC TTTTTTATTGTTCTT TERM 1695 1190474 - 1190441 - f 100 -6.9 -6.07374 | opp_overlap 1190441 ATAAAAAATAAAAAA GAATCTATTTTCTAA ACAC TTGGGAAATAGATTC TTTTTTATTGTTCTT TERM 1696 1190988 - 1190978 - g 82 -4 -5.55698 | TATAATTTAAAAAAA GTAA AGA TTAC TATAAATACCTTAAT CLK_0476 1190645 - 1191334 + | hypothetical protein TERM 1697 1191363 - 1191375 + T 76 -2.7 -5.86976 | opp_overlap 1191332, overlap 1191332 GAAATAGTGACATTT CATGA TTC TTATG TTTTTTATTTTATAA CLK_0477 1191925 - 1191488 - | acetyltransferase CLK_0478 1192392 - 1193192 + | D-alanyl-D-alanine carboxypeptidase family protein tlp 1193491 - 1193718 + | small, acid-soluble spore protein tlp TERM 1698 1193753 - 1193766 + T 79 -3.9 -5.72622 | GTAGCTTTTTACTTA TAGTA GGGC TACTA TTTTTTATTTATAAA CLK_0480 1194528 - 1193905 - | TetR family transcriptional regulator TERM 1699 1194686 - 1194675 - H 76 -4.4 -5.35815 | TATACTAAATAAAAA TGAC CACG GTCA TAAATATTTACGTTA CLK_0481 1194720 - 1195910 + | M24 family peptidase TERM 1700 1196107 - 1196135 + F 74 -9.1 -3.10761 | opp_overlap 1196103 CTAAATGAAGATTTT GGGATAATATT AAAAGAA AATATTATCCC TATATGTATTAAAAT TERM 1701 1196382 - 1196361 - f 71 -5.3 -4.68655 | opp_overlap 1196358 1196361 1196381 TAATTTTAAAATAAA TAGTAAATC AATA AATTTACTA TTATTTTTAGATAAT TERM 1702 1196907 - 1196935 + G 79 -7.5 -4.36914 | opp_overlap 1196910 1196912, overlap 1196908 TGAGTTTGATATACT ATATACCCTTGTT TCA AACAAGGGTAAAG TTTTATCAAGAGAAC TERM 1703 1196908 - 1196934 + G 87 -11 -3.21934 | opp_overlap 1196910 1196912, overlap 1196907 GAGTTTGATATACTA TATACCCTTGTT TCA AACAAGGGTAAA GTTTTATCAAGAGAA TERM 1704 1196932 - 1196910 - g 100 -13.6 -2.88999 | opp_overlap 1196908 1196907, overlap 1196912 GTTTGATATACTATA TACCCTTGTT TCA AACAAGGGTA AAGTTTTATCAAGAG TERM 1705 1196930 - 1196912 - g 90 -11.8 -2.99545 | opp_overlap 1196908 1196907, overlap 1196910 TTGATATACTATATA CCCTTGTT TCA AACAAGGG TAAAGTTTTATCAAG CLK_0482 1196425 - 1197111 + | DNA-binding response regulator CLK_0483 1197112 - 1198467 + | sensor histidine kinase CLK_0484 1198571 - 1198705 + | hypothetical protein TERM 1706 1198808 - 1198796 - f 70 -6.3 -4.2717 | opp_overlap 1198794 1198796 ATTATTTTAGCAAAA TTCAC ACT GTGAA TAATTTTTTAGCATG TERM 1707 1199863 - 1199911 + G 100 -12.6 -3.10354 | opp_overlap 1199865, overlap 1199865 CAGGAAGTTCGACGA TACTATCCTTTCGCTCCTTTTC TTGGT GCAAGAGTGCGAAAGGATAGTA TATTGAATGAATGTG TERM 1708 1199865 - 1199909 + G 85 -10.8 -3.1082 | opp_overlap 1199865, overlap 1199863 GGAAGTTCGACGATA CTATCCTTTCGCTCCTTTTC TTGGT GCAAGAGTGCGAAAGGATAG TATATTGAATGAATG TERM 1709 1199909 - 1199865 - g 82 -10.8 -2.79831 | opp_overlap 1199865 1199863 GGAAGTTCGACGATA CTATCCTTTCGCTCCTTTTC TTGGT GCAAGAGTGCGAAAGGATAG TATATTGAATGAATG CLK_0485 1199002 - 1200261 + | cytochrome P450 CLK_0486 1202209 - 1200401 - | heavy metal-binding domain-containing protein TERM 1710 1202005 - 1202018 + g 84 -6.7 -5.24531 | CATTAGAACTTTGTG TGCTG TATC CAGCA TTTTTTATAGCGGAT TERM 1711 1202326 - 1202338 + H 72 -4.9 -5.07486 | TAATAAATTTGTATC TTTAG AAA CTAAA TTTTTATTACAAATA TERM 1712 1202711 - 1202684 - H 75 -9.4 -2.67707 | opp_overlap 1202681, overlap 1202683 1202681 TTAGATTAATAATAT TCATAGAAAACA ATGA TGTTTTCTATAA GATGTTACAAATATA CLK_0487 1202747 - 1202983 + | hypothetical protein TERM 1713 1203039 - 1202989 - f 100 -13.1 -4.49756 | gap 1, opp_overlap 1203002, overlap 1202992 GTCCAAATAGTAAAA TTA-TATACCTAAATAGCTAGAGA TTAA TCTCTAGCTATTTTGATATAATAA AGGTGAGAGTTAACT TERM 1714 1203035 - 1202992 - f 100 -16.4 -3.19995 | opp_overlap 1203002, overlap 1202989 CAAATAGTAAAATTA TATACCTAAATAGCTAGAGA TTAA TCTCTAGCTATTTTGATATA ATAAAGGTGAGAGTT TERM 1715 1203002 - 1203025 + F 100 -12.6 -4.371 | opp_overlap 1202992 1202989 AATTATATACCTAAA TAGCTAGAGA TTAA TCTCTAGCTA TTTTGATATAATAAA TERM 1716 1203618 - 1203600 - g 82 -8.9 -3.92324 | opp_overlap 1203593, overlap 1203616 TGTGGCAAGAGTAAA GGCTCTT ATTAG AAGAGCC TATAGAGGAGAGCAT CLK_0488 1203253 - 1203954 + | DNA-binding response regulator TERM 1717 1204766 - 1204756 - g 70 -5.4 -4.63527 | TTACGACTTTAAAAA CTCA TGT TGAG GCAATAATAGATGGT CLK_0489 1203954 - 1205360 + | sensor histidine kinase TERM 1718 1205665 - 1205617 - T 75 -9.1 -3.22818 | opp_overlap 1205618, overlap 1205615 1205613 1205612 ATAAATAAAAGCACA TTTAAGAGGGAGTTTCAAAATTA GAT TTATTTTGAGACTTCCTCTTAAT TTTATGGTCTAGTTT TERM 1719 1205618 - 1205664 + T 100 -17 -4.5265 | opp_overlap 1205617 1205615 1205613 1205612 TAAATAAAAGCACAT TTAAGAGGGAGTTTCAAAATTA GAT TTATTTTGAGACTTCCTCTTAA TTTTATGGTCTAGTT CLK_0490 1206386 - 1205700 - | hypothetical protein TERM 1720 1206477 - 1206505 + r 77 -9.1 -3.45768 | opp_overlap 1206469 1206482 1206486, overlap 1206480 GAAATTATCATATCT TAACATGAATATT ATA AATATACATGTTA TTAATTGGTGTTACC CLK_0491 1207380 - 1206622 - | AraC family transcriptional regulator TERM 1721 1206802 - 1206821 + g 79 -5 -5.23943 | opp_overlap 1206802 1206801 AATTTCATTTACAAG CTGAGAAA AAGT TTTCCCAG TTTCTTTTTTTAATA CLK_0492 1207626 - 1208579 + | iron chelate ABC transporter permease protein CLK_0493 1208569 - 1209519 + | iron chelate ABC transporter permease protein CLK_0494 1209516 - 1210271 + | iron chelate ABC transporter ATP-binding protein TERM 1722 1210813 - 1210796 - g 70 -5.7 -4.19817 | TGGAGTCAGTTAAAA CTAATTT AGAT AAATTAG GAAAGATATTTGATA CLK_0495 1210345 - 1211289 + | iron chelate ABC transporter solute-binding protein CLK_0496 1211492 - 1212493 + | AraC family transcriptional regulator TERM 1723 1212506 - 1212534 + F 86 -5.5 -5.67063 | gap 1 TAAATTATTAAATTT TACTGC-ATACA TGTTAT TGTATTGCAGTA TTTTTTTGTACTAAA TERM 1724 1212635 - 1212605 - f 76 -4.2 -5.38958 | opp_overlap 1212606, overlap 1212606 AGCTATAAAGAAAAA CCTATAATTGAT AATAGAA ATCAATTATAGT TTTTTATTTTTTATG TERM 1725 1212634 - 1212606 - f 73 -7.7 -3.81748 | opp_overlap 1212606, overlap 1212605 GCTATAAAGAAAAAC CTATAATTGAT AATAGAA ATCAATTATAG TTTTTTATTTTTTAT TERM 1726 1212606 - 1212634 + F 100 -7.7 -6.07374 | opp_overlap 1212605 1212606 GCTATAAAGAAAAAC CTATAATTGAT AATAGAA ATCAATTATAG TTTTTTATTTTTTAT CLK_0497 1212825 - 1214627 + | ABC transporter ATP-binding/permease protein TERM 1727 1215133 - 1215151 + G 80 -8.9 -3.8512 | CTTTCTATGTTTGCT GCAATGC CAGTA GCATTGC TTATTATCATAGGTA CLK_0498 1214629 - 1216350 + | ABC transport ATP-binding/permease protein TERM 1728 1216405 - 1216456 + T 83 -6.2 -5.38951 | opp_overlap 1216405 AATAGTGCTATAAAA TAAAAGTCCATTGAAAGACAAACA TTAA TTTTAGTTTTTTAATGAACTTTTA TTTTTTATGTAGCTT CLK_0499 1217924 - 1216551 - | sensor histidine kinase TERM 1729 1216672 - 1216693 + g 70 -3.8 -5.08255 | ATACCATGGTTATTT TTATCAGT TTTTGT GCTGATAA TTTTATTTTCAACAT CLK_0500 1218634 - 1217927 - | DNA-binding response regulator TERM 1730 1218838 - 1218871 + r 100 -16.3 -3.2048 | gap 1, opp_overlap 1218818 1218838 1218839 1218841 1218857, overlap 1218839 TCCTCTAAAGGATAA C-GACTTCTTAGGAGT AAA ACTCCTAAGAAGTCTG TTGATAAGCTTTAGA TERM 1731 1218870 - 1218838 - R 100 -16.5 -3.60151 | opp_overlap 1218838 1218839, overlap 1218818 1218839 1218841 1218857 TCCTCTAAAGGATAA CGACTTCTTAGGAGT AAA ACTCCTAAGAAGTCT GTTGATAAGCTTTAG TERM 1732 1218839 - 1218869 + r 100 -20 -3.16288 | opp_overlap 1218838 1218839 1218841 1218857, overlap 1218838 CCTCTAAAGGATAAC GACTTCTTAGGAGT AAA ACTCCTAAGAAGTC TGTTGATAAGCTTTA TERM 1733 1218869 - 1218839 - R 100 -20 -2.75769 | opp_overlap 1218839 1218838, overlap 1218838 1218841 1218857 CCTCTAAAGGATAAC GACTTCTTAGGAGT AAA ACTCCTAAGAAGTC TGTTGATAAGCTTTA TERM 1734 1218867 - 1218841 - R 100 -16.8 -2.92144 | opp_overlap 1218839 1218838, overlap 1218839 1218838 1218857 TCTAAAGGATAACGA CTTCTTAGGAGT AAA ACTCCTAAGAAG TCTGTTGATAAGCTT TERM 1735 1218910 - 1218879 - R 100 -14.6 -3.29461 | opp_overlap 1218871 GAAGTCTGTTGATAA GCTTTAGAGGGAGT AAAA ATTCCCTCTAAAGC CAAGAACTCTGTTTA CLK_0501 1219809 - 1218958 - | hypothetical protein TERM 1736 1219585 - 1219597 + g 80 -6.3 -5.00138 | opp_overlap 1219593 TTTTTTTAATCCTCT TTCCA TAA TGGAA TTTTTCATTTCCATC CLK_0502 1220171 - 1221034 + | hypothetical protein TERM 1737 1221158 - 1221192 + F 100 -20.4 -4.47786 | opp_overlap 1221158 ACTTTTTACTCAAAA GGGACTATCTTAAAAT AAA ATTTTAAGATAGTCCC TTTATTTAAATAGTT TERM 1738 1221192 - 1221158 - f 100 -20.4 -4.18197 | opp_overlap 1221158 ACTTTTTACTCAAAA GGGACTATCTTAAAAT AAA ATTTTAAGATAGTCCC TTTATTTAAATAGTT TERM 1739 1223994 - 1223973 - g 70 -8.9 -2.52464 | opp_overlap 1223966 TGTTGTTTTAACGGA TGTTATTTC ACCT GAAATAACA GGAGCAGAATTCTCA CLK_0503 1221637 - 1225011 + | putative cell surface protein TERM 1740 1225211 - 1225179 - f 93 -9.3 -4.71186 | opp_overlap 1225179 1225183, overlap 1225183 ATTATTAATATAAAA TAAAGTGCGTCTTTT ATA AAAGGACGTACTTTA TTTGTTTAAAATGTT TERM 1741 1225179 - 1225211 + F 100 -13.7 -4.4572 | opp_overlap 1225179 1225183, overlap 1225183 ATTATTAATATAAAA TAAAGTGCGTCTTTT ATA AAAGGACGTACTTTA TTTGTTTAAAATGTT TERM 1742 1225207 - 1225183 - f 73 -5.7 -4.88163 | opp_overlap 1225183 1225179, overlap 1225179 TTAATATAAAATAAA GTGCGTCTTTT ATA AAAGGACGTAC TTTATTTGTTTAAAA TERM 1743 1225183 - 1225207 + F 100 -10.1 -4.78326 | opp_overlap 1225179 1225183, overlap 1225179 TTAATATAAAATAAA GTGCGTCTTTT ATA AAAGGACGTAC TTTATTTGTTTAAAA CLK_0504 1225322 - 1227370 + | thymidylate kinase TERM 1744 1227568 - 1227531 - f 87 -10 -3.31575 | opp_overlap 1227530 1227529, overlap 1227533 1227536 ATATAAAATATTTAA TATAAGCCTTCGCTAT AATTTA AGAGCGAAGGCTTAAA AATTTAAGATAACTA TERM 1745 1227566 - 1227533 - f 95 -12.6 -3.2099 | opp_overlap 1227530 1227529, overlap 1227531 1227536 ATAAAATATTTAATA TAAGCCTTCGCTAT AATTTA AGAGCGAAGGCTTA AAAATTTAAGATAAC TERM 1746 1227563 - 1227536 - f 90 -9.9 -3.7212 | opp_overlap 1227530 1227529, overlap 1227533 1227531 AAATATTTAATATAA GCCTTCGCTAT AATTTA AGAGCGAAGGC TTAAAAATTTAAGAT TERM 1747 1228467 - 1228455 - g 72 -7.7 -3.56036 | overlap 1228453 TTTACAAAAAAAGTA GCAGA CTC TCTGC ATGAAGAAAATACGG CLK_0505 1227693 - 1228688 + | hypothetical protein TERM 1748 1228802 - 1228759 - f 82 -9.1 -4.16305 | opp_overlap 1228764, overlap 1228764 AGTTATAAATAATAA CACAATAGTGCTAAAGGTC AAATAG GAACTTTAGCACTATTTTA TATTATACTCATATA TERM 1749 1228797 - 1228764 - f 100 -11.2 -3.93055 | opp_overlap 1228764, overlap 1228759 TAAATAATAACACAA TAGTGCTAAAGGTC AAATAG GAACTTTAGCACTA TTTTATATTATACTC TERM 1750 1228764 - 1228797 + F 100 -11.2 -4.75289 | opp_overlap 1228764 1228759 TAAATAATAACACAA TAGTGCTAAAGGTC AAATAG GAACTTTAGCACTA TTTTATATTATACTC CLK_0506 1228853 - 1229437 + | hypothetical protein CLK_0507 1230451 - 1229750 - | CAAX amino terminal protease family protein TERM 1751 1230242 - 1230221 - G 89 -6.7 -5.42131 | opp_overlap 1230221 1230224, overlap 1230214 CAATGACATAAAAAA GCTTTGTTT TTTA AAACAAAAC AATTTTTTTAAAGAT TERM 1752 1230224 - 1230244 + g 78 -4.1 -5.42259 | opp_overlap 1230214 1230221, overlap 1230221 TGACATAAAAAAGCT TTGTTTTTT AAA ACAAAACAA TTTTTTTAAAGATAA CLK_0508 1231373 - 1230567 - | metallo-beta-lactamase family protein CLK_0509 1233677 - 1231758 - | drug resistance ABC transporter, ATP-binding protein TERM 1753 1231978 - 1231994 + g 71 -4.5 -4.71222 | TTTTCATATTCAAGT TTTTCTT TAT AAGAGAA TTTTAATTTTGCTGT TERM 1754 1232142 - 1232158 + g 70 -5.1 -4.65747 | overlap 1232143 AGAAATTTTTCCGTT ACCTTCA AAG TGAAGGA TTTTATTACAGATTC TERM 1755 1232143 - 1232157 + g 76 -8.6 -3.38725 | overlap 1232142 GAAATTTTTCCGTTA CCTTCA AAG TGAAGG ATTTTATTACAGATT TERM 1756 1232613 - 1232600 - G 74 -6.7 -4.32048 | TAATAATATTTAAAA GGGTA GATT TACCC ATACCGTTGTTTCCA TERM 1757 1232672 - 1232683 + g 74 -3 -5.4756 | AAATGTAATTAAAGT CTTT TATT AAAG TTTTTTCTTCAAATT CLK_0510 1234316 - 1235530 + | hypothetical protein TERM 1758 1235554 - 1235587 + F 100 -13.5 -5.06414 | opp_overlap 1235554 TAGAAGATGTAAAAA TAGAGATATGGAATT TTAA AATTCTATATCTCTA TTTTTATTGAAAAGC TERM 1759 1235587 - 1235554 - f 100 -11.3 -4.76312 | opp_overlap 1235554 TAGAAGATGTAAAAA TAGAGATATGGAATT TTAA AATTCTATATCTCTA TTTTTATTGAAAAGC TERM 1760 1235950 - 1235934 - g 74 -2.3 -5.52384 | overlap 1235936 TTTGGAGTAAAAAAA TGTTTTG ATA CAAAAAA AGCTGAGAGATATTT CLK_0511 1235904 - 1236254 + | ArsC family protein CLK_0512 1236472 - 1237365 + | radical SAM domain-containing protein TERM 1761 1237549 - 1237493 - f 82 -9.8 -3.0094 | gap 1, opp_overlap 1237497 TTTTAGGCAGAGATA TTGAGAGCCTTAATTTAAAACGGG-AT TATT ATACCCATTTTAAATTAAGGCTCTTTT GATTTATAAGGAGGA TERM 1762 1237497 - 1237545 + F 100 -17.2 -4.61873 | gap 1, opp_overlap 1237493 AGGCAGAGATATTGA GAGCCTTAATTTAAAACGGG-AT TATT ATACCCATTTTAAATTAAGGCTC TTTTGATTTATAAGG CLK_0513 1237574 - 1238992 + | FAD-dependent oxidoreductase CLK_0514 1239049 - 1240305 + | pyridine nucleotide-disulphide oxidoreductase CLK_0515 1240308 - 1240676 + | hypothetical protein TERM 1763 1240727 - 1240673 - f 100 -16.2 -4.58395 | opp_overlap 1240680 1240684 1240687, overlap 1240680 1240681 TTTAGGCTGTAAAAA TTAAATATCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGGTGGTTAA TAAATATTGACAATA TERM 1764 1240680 - 1240720 + F 100 -20.9 -2.79842 | opp_overlap 1240673 1240680 1240681, overlap 1240684 1240687 TGTAAAAATTAAATA TCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGG TGGTTAATAAATATT TERM 1765 1240720 - 1240680 - f 100 -18.7 -3.7557 | opp_overlap 1240680 1240684 1240687, overlap 1240673 1240681 TGTAAAAATTAAATA TCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGG TGGTTAATAAATATT TERM 1766 1240719 - 1240681 - f 100 -22.2 -2.84257 | opp_overlap 1240680 1240684 1240687, overlap 1240680 1240673 GTAAAAATTAAATAT CAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTG GTGGTTAATAAATAT TERM 1767 1240684 - 1240716 + F 100 -18.1 -3.29096 | opp_overlap 1240681 1240680 1240673, overlap 1240680 1240687 AAAATTAAATATCAA TAAGGATAGCTAATA TAA TATTAGCTATCCTTA TTGGTGGTTAATAAA TERM 1768 1240687 - 1240713 + F 100 -15.4 -3.78124 | opp_overlap 1240681 1240680 1240673, overlap 1240684 1240680 ATTAAATATCAATAA GGATAGCTAATA TAA TATTAGCTATCC TTATTGGTGGTTAAT TERM 1769 1241419 - 1241389 - g 70 -8.3 -3.05769 | TTCGCAAAGGATACA CCTCAATCAGTGG GGCTT CCACCAATAGAGG AATACAAAAATGATT TERM 1770 1241512 - 1241486 - g 80 -6.9 -4.73614 | opp_overlap 1241485 1241504 TATCAGGAAAAGAAA TATTATTTAAA TATGT TTTAAATAATA AATATTTATGGTATA TERM 1771 1241903 - 1241887 - g 70 -3.5 -5.02074 | TTAGTTCCTAAAAAA GCAGCAG GTA CAGCAGC AGGCTTTACAGGTTT glpT 1240765 - 1242102 + | glycerol-3-phosphate transporter TERM 1772 1242512 - 1242487 - f 95 -11.9 -3.30124 | opp_overlap 1242480 1242479 1242488, overlap 1242488 TGGTACCGCGGATAA TCCGTCTCTGT TTTT ACAGAGACGGT TTTTTATATGCAATG TERM 1773 1242488 - 1242511 + F 100 -15.4 -5.37043 | opp_overlap 1242487 1242488, overlap 1242480 1242479 GGTACCGCGGATAAT CCGTCTCTGT TTTT ACAGAGACGG TTTTTTATATGCAAT TERM 1774 1242511 - 1242488 - f 100 -15.4 -2.57931 | opp_overlap 1242480 1242479 1242488, overlap 1242487 GGTACCGCGGATAAT CCGTCTCTGT TTTT ACAGAGACGG TTTTTTATATGCAAT TERM 1775 1242659 - 1242677 + F 70 -7.6 -3.41527 | opp_overlap 1242653 1242658 1242659 CTAAATGAATAAAAT GATTTTAA ACA TTAAAATC TTATAATAAAACTTA TERM 1776 1242677 - 1242659 - f 72 -7.6 -3.497 | opp_overlap 1242659, overlap 1242653 1242658 CTAAATGAATAAAAT GATTTTAA ACA TTAAAATC TTATAATAAAACTTA argS 1242722 - 1244413 + | arginyl-tRNA synthetase TERM 1777 1244666 - 1244684 + F 70 -2.5 -5.5762 | CTACTAAAGCTCATT TATATGT TTATT ACGTATA TTTTTTATCTTTGCT TERM 1778 1245831 - 1245811 - g 70 -6.1 -4.06055 | AGCTTTTAAAGGAAA CGGGAGTAT TTT ATACCCCAG GAGAATGTTTTGACT CLK_0518 1244817 - 1245947 + | dipeptidase CLK_0519 1246244 - 1246624 + | CBS domain-containing protein TERM 1779 1246658 - 1246704 + T 82 -5.6 -5.5762 | gap 1, opp_overlap 1246658, overlap 1246632 1246685 TGCTACGATAAAAAA TACATTTAATGAACTAATTTA TTTTCC TAAGA-AGTTCATTAAATGTA TTTTTTATCTTTGCT TERM 1780 1246704 - 1246658 - T 81 -5.5 -5.31275 | opp_overlap 1246632 1246658 1246685 TGCTACGATAAAAAA TACATTTAATGAACTAATT TATTTTCCT AAGAAGTTCATTAAATGTA TTTTTTATCTTTGCT CLK_0520 1247003 - 1246845 - | hypothetical protein feoB 1248792 - 1247029 - | ferrous iron transport protein B TERM 1781 1247241 - 1247217 - G 73 -8.8 -3.18506 | overlap 1247216 ATAATGGAGTAAAAT GATTTAAAAG AGTAA CTTTTAAATC TCCACCATATATAAC TERM 1782 1247946 - 1247936 - G 70 -4 -4.89966 | ATACCTAAAAATAAA GTAA GTA TTAC AGGTAGAAATACTAT feoA 1249028 - 1248807 - | ferrous ion transport protein A TERM 1783 1248883 - 1248901 + g 80 -2.3 -5.76949 | overlap 1248887 AAATTTATTAGTATG GGGTCTC CTAAA GGGGCTC TTTTTTTTAAGGATA TERM 1784 1249201 - 1249191 - H 70 -4 -5.16132 | opp_overlap 1249191, overlap 1249186 TATATGAAAATAAAA TTCA TGT TGAA TTTTCGCAAAAACTG CLK_0523 1249354 - 1249749 + | hypothetical protein TERM 1785 1249873 - 1249841 - f 100 -10.8 -4.46267 | opp_overlap 1249841 1249846, overlap 1249846 ATAAGTTAATTAAAA TAAAAGAAAAAGGG TTAAC CCCTTTTTCTTTTG TTATATAAAGCATAT TERM 1786 1249841 - 1249873 + F 95 -13 -3.49102 | opp_overlap 1249841 1249846, overlap 1249846 ATAAGTTAATTAAAA TAAAAGAAAAAGGG TTAAC CCCTTTTTCTTTTG TTATATAAAGCATAT TERM 1787 1249868 - 1249846 - f 100 -10.7 -5.18643 | opp_overlap 1249841 1249846, overlap 1249841 TTAATTAAAATAAAA GAAAAAGGG TTAAC CCCTTTTTC TTTTGTTATATAAAG TERM 1788 1249846 - 1249868 + F 100 -10.7 -4.84311 | opp_overlap 1249846 1249841, overlap 1249841 TTAATTAAAATAAAA GAAAAAGGG TTAAC CCCTTTTTC TTTTGTTATATAAAG CLK_0524 1249962 - 1250687 + | haloacid dehalogenase, IB family protein TERM 1789 1250759 - 1250794 + F 73 -3.4 -5.47914 | opp_overlap 1250763, overlap 1250760 1250763 AAATATACATGTTAA AAAATGCACAATTTTA ATTT TAAAATTGTGCATAAA TTTTTTGTCGTTTTT TERM 1790 1250790 - 1250763 - f 100 -13 -5.08169 | opp_overlap 1250760 1250759 1250763 ATACATGTTAAAAAA TGCACAATTTTA ATTT TAAAATTGTGCA TAAATTTTTTGTCGT TERM 1791 1250763 - 1250790 + F 93 -13 -2.9676 | opp_overlap 1250763, overlap 1250760 1250759 ATACATGTTAAAAAA TGCACAATTTTA ATTT TAAAATTGTGCA TAAATTTTTTGTCGT TERM 1792 1252007 - 1251987 - g 72 -6.9 -4.18763 | opp_overlap 1251986, overlap 1251990 AAGAAATTTGGAAAA TGATAGGAG TAA CTCCTATGA ATGGTTTAGATTATA TERM 1793 1252004 - 1251990 - g 73 -8.6 -3.1012 | opp_overlap 1251986, overlap 1251987 AAATTTGGAAAATGA TAGGAG TAA CTCCTA TGAATGGTTTAGATT CLK_0525 1251122 - 1252696 + | putative glycosyl hydrolase TERM 1794 1252738 - 1252775 + F 93 -9.3 -4.65263 | opp_overlap 1252738 ATAAATTTTTCAAGA GTGTTGGGTTAGAGGTA TATT TCTCTCTAATCCAATAC TTTATTTTAACCAAT CLK_0526 1253108 - 1253575 + | acetyltransferase TERM 1795 1253762 - 1253787 + F 100 -9.1 -6.17669 | opp_overlap 1253765, overlap 1253765 AAAATTTCGCTTATT AAAGCTAGAGA TTTT TCTCTAGCTTA TTTTTTTATTTTATT TERM 1796 1253765 - 1253784 + F 100 -10.8 -5.04908 | opp_overlap 1253765, overlap 1253762 ATTTCGCTTATTAAA GCTAGAGA TTTT TCTCTAGC TTATTTTTTTATTTT TERM 1797 1253784 - 1253765 - f 91 -10.8 -3.72695 | opp_overlap 1253765 1253762 ATTTCGCTTATTAAA GCTAGAGA TTTT TCTCTAGC TTATTTTTTTATTTT TERM 1798 1254081 - 1254069 - g 71 -4.9 -4.72473 | TTAAGTAAAAAACAA TTAAG AAT CTTAA GAAAAGATTTAGGTA TERM 1799 1254141 - 1254127 - g 75 -5.8 -4.77157 | TTAACTTATTAAAAA GAAAAA ATG TTTTTC AAAATATTGCATTAC CLK_0527 1253853 - 1254809 + | methionine ABC transporter ATP-binding protein CLK_0528 1254811 - 1255452 + | methionine ABC transporter permease CLK_0529 1255508 - 1256320 + | NLPA family lipoprotein TERM 1800 1257294 - 1257276 - g 93 -4.7 -6.08342 | GAAGAAATAAAAAAA TATATTG AAGAA CAATATA AAGGAGCTATACTTC CLK_0530 1256508 - 1257320 + | NLPA family lipoprotein CLK_0531 1257549 - 1258715 + | amidohydrolase family protein CLK_0532 1259287 - 1259916 + | hypothetical protein TERM 1801 1259905 - 1259950 + T 100 -17.5 -3.73509 | gap 1, opp_overlap 1259905, overlap 1259913 ACAACCTGGAACAAA TTTATAAACTAAGGAAAGTGTA GAT TA-ACTTTCCTTAGTTTATAAA TTTAGAATTTGATAT TERM 1802 1259950 - 1259905 - T 100 -17.5 -4.18702 | gap 1, opp_overlap 1259905 1259913 ACAACCTGGAACAAA TTTATAAACTAAGGAAAGTGTA GAT TA-ACTTTCCTTAGTTTATAAA TTTAGAATTTGATAT TERM 1803 1259913 - 1259942 + T 95 -10.3 -4.02132 | gap 1, opp_overlap 1259905, overlap 1259905 GAACAAATTTATAAA CTAAGGAAAGTGTA GAT TA-ACTTTCCTTAG TTTATAAATTTAGAA CLK_0533 1260267 - 1259944 - | TetR family transcriptional regulator CLK_0534 1260423 - 1261115 + | GntR family transcriptional regulator CLK_0535 1261351 - 1262214 + | hypothetical protein CLK_0536 1262424 - 1262636 + | hypothetical protein TERM 1804 1262719 - 1262703 - T 73 -5.3 -4.75063 | opp_overlap 1262703 1262706 ACAAAATTTCAAAAA TAATATT CTT AATATTA TATAGTATTTCAAAT TERM 1805 1262810 - 1262779 - T 100 -11.8 -6.38655 | opp_overlap 1262784 AAATATAAAAAAAAA TAAAATCTCAGCTA TAAT TAGCTGAGATTTTT CTTAATGTATGTTTA TERM 1806 1262784 - 1262805 + T 100 -11.7 -5.17744 | opp_overlap 1262779 TAAAAAAAAATAAAA TCTCAGCTA TAAT TAGCTGAGA TTTTTCTTAATGTAT gltX 1264311 - 1262854 - | glutamyl-tRNA synthetase TERM 1807 1263823 - 1263835 + g 89 -4.1 -5.84432 | ATGGAAAGAAGTTGA TCCAG TAG TTGGA TTTTTTTGTCTTATA TERM 1808 1264372 - 1264350 - H 91 -8.5 -5.0065 | TATTTATAAATAAAA CCTTTCATC ACTTG GACGAAAGG TAAAAATTCATTTTA TERM 1809 1265103 - 1265093 - g 72 -4 -5.08824 | GCTGGAGCTAAAAAA GTTA TAA TAAC AGCACCAGGAAAAAA gap 1264736 - 1265752 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 1810 1265890 - 1265916 + T 80 -6.7 -4.98616 | opp_overlap 1265894, overlap 1265894 ATGTAAAATAAAATT AAAAGAATGGA ATTTA TCCATTCTTTC TTTTTAATATTTTCC TERM 1811 1265894 - 1265912 + T 90 -7.5 -4.95618 | opp_overlap 1265894, overlap 1265890 AAAATAAAATTAAAA GAATGGA ATTTA TCCATTC TTTCTTTTTAATATT TERM 1812 1265912 - 1265894 - T 86 -7.5 -4.83677 | opp_overlap 1265894 1265890 AAAATAAAATTAAAA GAATGGA ATTTA TCCATTC TTTCTTTTTAATATT CLK_0539 1267486 - 1265978 - | metallo-beta-lactamase family protein CLK_0540 1268055 - 1268204 + | hypothetical protein CLK_0541 1268347 - 1268991 + | HD domain-containing protein CLK_0542 1269047 - 1270417 + | aldehyde dehydrogenase family protein TERM 1813 1270520 - 1270475 - T 84 -4.9 -5.7827 | opp_overlap 1270479 1270484 1270490, overlap 1270478 1270480 1270484 1270490 AATATAAATAAAAAA GAATATAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTAGTGTA TATTACAAATTAGCA TERM 1814 1270517 - 1270478 - T 100 -11 -4.9072 | opp_overlap 1270479 1270484 1270490, overlap 1270475 1270480 1270484 1270490 ATAAATAAAAAAGAA TATAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTAGT GTATATTACAAATTA TERM 1815 1270479 - 1270516 + T 100 -14.5 -3.10017 | opp_overlap 1270478 1270475 1270480 1270484 1270490, overlap 1270484 1270490 TAAATAAAAAAGAAT ATAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTAG TGTATATTACAAATT TERM 1816 1270515 - 1270480 - T 100 -18 -4.02034 | opp_overlap 1270479 1270484 1270490, overlap 1270478 1270475 1270484 1270490 AAATAAAAAAGAATA TAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTA GTGTATATTACAAAT TERM 1817 1270511 - 1270484 - T 100 -14.4 -4.50902 | opp_overlap 1270479 1270484 1270490, overlap 1270480 1270478 1270475 1270490 AAAAAAGAATATAAA TAAAAAGTCAGG ATTT CCTGACTTTTTA TTTAGTGTATATTAC TERM 1818 1270484 - 1270511 + T 100 -14.4 -3.93383 | opp_overlap 1270484 1270480 1270478 1270475 1270490, overlap 1270479 1270490 AAAAAAGAATATAAA TAAAAAGTCAGG ATTT CCTGACTTTTTA TTTAGTGTATATTAC TERM 1819 1270505 - 1270490 - T 100 -9 -5.4659 | opp_overlap 1270484 1270479 1270490, overlap 1270484 1270480 1270478 1270475 GAATATAAATAAAAA GTCAGG ATTT CCTGAC TTTTTATTTAGTGTA TERM 1820 1270490 - 1270505 + T 100 -9 -5.35815 | opp_overlap 1270490 1270484 1270480 1270478 1270475, overlap 1270484 1270479 GAATATAAATAAAAA GTCAGG ATTT CCTGAC TTTTTATTTAGTGTA CLK_0543 1271927 - 1270530 - | sodium:alanine symporter family protein TERM 1821 1270831 - 1270817 - G 81 -5.8 -5.21709 | opp_overlap 1270817 TTTCACAGTAAAAAA CTATAA CTA TTATAG TTGATAAAACAAATA TERM 1822 1272441 - 1272428 - R 89 -4.5 -6.06529 | opp_overlap 1272428 1272421 CATACATAAAAAAAA CTCCC CAAA GGAAG TTTTTTATGATTATA TERM 1823 1272492 - 1272461 - R 82 -9.5 -3.30443 | opp_overlap 1272461 1272462, overlap 1272462 1272464 TTATGATTATATTAA TGACCCCCTTATG TAAATT CATAAGGAGGTCT ATTATTAAAGATTAG TERM 1824 1272462 - 1272491 + r 90 -10.8 -3.40498 | opp_overlap 1272462 1272461 1272464, overlap 1272461 TATGATTATATTAAT GACCCCCTTATG TAAATT CATAAGGAGGTC TATTATTAAAGATTA TERM 1825 1272491 - 1272462 - R 89 -13 -2.57944 | opp_overlap 1272461 1272462, overlap 1272461 1272464 TATGATTATATTAAT GACCCCCTTATG TAAATT CATAAGGAGGTC TATTATTAAAGATTA TERM 1826 1272489 - 1272464 - R 80 -9.8 -2.82519 | opp_overlap 1272462 1272461, overlap 1272462 1272461 TGATTATATTAATGA CCCCCTTATG TAAATT CATAAGGAGG TCTATTATTAAAGAT CLK_0544 1273901 - 1272525 - | sodium:alanine symporter family protein TERM 1827 1273812 - 1273795 - G 72 -2.8 -5.47399 | TTAATCTGAAAAAAA TTTAAC GTAAAA GTTAAA ATAATTCCTCCACCA TERM 1828 1274259 - 1274314 + H 100 -14.6 -2.67803 | gap 1, opp_overlap 1274262, overlap 1274262 AGGAAAATATTTGAA TAATAGTTGCAAGTACAAC-TAATTTG TGA TATATTAAGTTGTATTTGCAACTATTA TAAATTTAATGGAGG TERM 1829 1274262 - 1274311 + H 95 -11.9 -3.48807 | gap 1, opp_overlap 1274262, overlap 1274259 AAAATATTTGAATAA TAGTTGCAAGTACAAC-TAATTTG TGA TATATTAAGTTGTATTTGCAACTA TTATAAATTTAATGG TERM 1830 1274311 - 1274262 - H 79 -9 -3.69976 | gap 1, opp_overlap 1274259 1274262 AAAATATTTGAATAA TAGTTGCAAGTACAAC-TAATTT GTGAT ATATTAAGTTGTATTTGCAACTA TTATAAATTTAATGG CLK_0545 1274339 - 1274776 + | MarR family transcriptional regulator CLK_0546 1274794 - 1276161 + | MATE efflux family protein TERM 1831 1276220 - 1276253 + F 81 -7 -4.88388 | gap 1, opp_overlap 1276220 GGACTTATAATTAAA GCTTAGAGATAATCT TGATT AG-TTATTTCTAAGC TTTTTATAAGGTTCT TERM 1832 1276342 - 1276332 - f 70 -2.6 -5.49234 | ATATGGAACAAAAAA TATA GCG TATA ATATAGGTTTTATAA CLK_0547 1276583 - 1277128 + | TPR domain-containing protein TERM 1833 1277148 - 1277110 - f 78 -8.6 -3.95893 | opp_overlap 1277110 1277117, overlap 1277105 1277117 AAAAGACATATTAAA TAAAAAATATTTTAATTA ATG TAAATAAAATATTTTCTA AAGGATAAGAATAAT TERM 1834 1277141 - 1277117 - f 82 -4.5 -5.69793 | opp_overlap 1277110 1277117, overlap 1277105 1277110 ATATTAAATAAAAAA TATTTTAATTA ATG TAAATAAAATA TTTTCTAAAGGATAA TERM 1835 1277197 - 1277166 - f 95 -10.4 -4.13244 | opp_overlap 1277167 1277172, overlap 1277167 1277172 GGATAAGAATAATAA GTAAAAGCTATGAT AGAA ATCATAGCTTTTAT AAATTTACGTTAAAT TERM 1836 1277196 - 1277167 - f 100 -13.9 -3.06862 | opp_overlap 1277167 1277172, overlap 1277166 1277172 GATAAGAATAATAAG TAAAAGCTATGAT AGAA ATCATAGCTTTTA TAAATTTACGTTAAA TERM 1837 1277167 - 1277196 + F 100 -13.9 -2.68071 | opp_overlap 1277167 1277166 1277172, overlap 1277172 GATAAGAATAATAAG TAAAAGCTATGAT AGAA ATCATAGCTTTTA TAAATTTACGTTAAA TERM 1838 1277172 - 1277191 + F 93 -9.4 -4.51196 | opp_overlap 1277172 1277167 1277166, overlap 1277167 GAATAATAAGTAAAA GCTATGAT AGAA ATCATAGC TTTTATAAATTTACG TERM 1839 1277191 - 1277172 - f 93 -9.4 -4.61824 | opp_overlap 1277167 1277172, overlap 1277167 1277166 GAATAATAAGTAAAA GCTATGAT AGAA ATCATAGC TTTTATAAATTTACG TERM 1840 1277806 - 1277828 + G 88 -8 -4.94992 | opp_overlap 1277806 AAGGAAAGAGTAGAA TTTTTATATA ATT TATATAAAAA TTTTTATGAATTTAA TERM 1841 1277828 - 1277806 - g 72 -8 -3.58511 | opp_overlap 1277806 AAGGAAAGAGTAGAA TTTTTATATA ATT TATATAAAAA TTTTTATGAATTTAA TERM 1842 1278074 - 1278064 - g 70 -5.4 -4.52747 | CAAAATACAAAAGAA GGTA ATT TACC TATGGAGAAAATAAC CLK_0548 1277227 - 1278204 + | hypothetical protein TERM 1843 1278328 - 1278382 + F 82 -9 -4.08216 | opp_overlap 1278333 1278334, overlap 1278338 AAAAAGTAAATAGAT TAAAAGTAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTAAGTAGA TTTTAAAAGAAATGA TERM 1844 1278377 - 1278333 - f 100 -17.7 -4.46493 | opp_overlap 1278328 1278338, overlap 1278334 GTAAATAGATTAAAA GTAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTAA GTAGATTTTAAAAGA TERM 1845 1278376 - 1278334 - f 100 -21.2 -3.26811 | opp_overlap 1278328 1278338, overlap 1278333 TAAATAGATTAAAAG TAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTA AGTAGATTTTAAAAG TERM 1846 1278338 - 1278372 + F 100 -17.6 -3.71148 | opp_overlap 1278334 1278333, overlap 1278328 TAGATTAAAAGTAAA TAGCTGATTTAAATTA TTG TAATTTAAATCAGCTA TTTAAGTAGATTTTA TERM 1847 1279784 - 1279760 - g 75 -4.4 -5.26247 | overlap 1279761 1279762 TTAAAAGAAATAAAA CCTTACCTTT GGAAT AAAGGTAAAA CTTATCCTGCTAATA CLK_0549 1279010 - 1280248 + | putative ABC transporter, solute-binding protein TERM 1848 1280333 - 1280356 + G 70 -6 -4.26903 | opp_overlap 1280333 1280335, overlap 1280335 AGTAGGAATAATAAA TTGCCTAAGT CAAA GCTTAGGCTA TTTTCCTACAGTGGG TERM 1849 1280335 - 1280354 + G 80 -8.6 -3.73756 | opp_overlap 1280333 1280335, overlap 1280333 TAGGAATAATAAATT GCCTAAGT CAAA GCTTAGGC TATTTTCCTACAGTG CLK_0550 1280250 - 1281122 + | ABC transporter, permease protein CLK_0551 1281141 - 1281947 + | ABC transporter, permease protein CLK_0552 1281959 - 1282978 + | ABC transporter, ATP-binding protein CLK_0553 1283281 - 1284240 + | hypothetical protein CLK_0554 1284344 - 1284895 + | acetyltransferase CLK_0555 1284905 - 1285240 + | hypothetical protein TERM 1850 1285294 - 1285310 + F 80 -6.5 -4.9792 | opp_overlap 1285294 1285292 1285295, overlap 1285294 ATTTATTTTGAAATA TCCCCTT TTA GGGGGGA TTTTTATGTGGGCTA TERM 1851 1285307 - 1285295 - f 72 -9.1 -2.61695 | opp_overlap 1285294 1285294, overlap 1285294 1285292 TTTATTTTGAAATAT CCCCT TTT AGGGG GGATTTTTATGTGGG CLK_0556 1285316 - 1285594 + | hypothetical protein CLK_0557 1285595 - 1286191 + | hypothetical protein maa 1286480 - 1287034 + | maltose transacetylase birA 1288303 - 1287320 - | birA bifunctional protein TERM 1852 1287835 - 1287822 - G 71 -6.7 -3.97042 | opp_overlap 1287822, overlap 1287834 TTATTATGAAGTAAA GCTGT TACT ACAGC AGCAGCAGCTATTTG CLK_0560 1288467 - 1288670 + | putative heavy metal-binding protein CLK_0561 1288946 - 1289383 + | CBS domain-containing protein TERM 1853 1289364 - 1289403 + F 100 -13.1 -4.68593 | opp_overlap 1289369 1289371, overlap 1289369 1289371 AAAAAGATATTATAA TAAAAGAGGGCAAGAGT TAAAAT ACTCTTGCCCTTCTTTA TTTTTAGATAATAAA TERM 1854 1289398 - 1289369 - f 100 -10.8 -4.82819 | opp_overlap 1289364 1289369 1289371, overlap 1289371 GATATTATAATAAAA GAGGGCAAGAGT TAAAAT ACTCTTGCCCTT CTTTATTTTTAGATA TERM 1855 1289369 - 1289399 + F 100 -10.6 -4.89063 | gap 1, opp_overlap 1289369 1289371, overlap 1289364 1289371 GATATTATAATAAAA G-AGGGCAAGAGT TAAAAT ACTCTTGCCCTTC TTTATTTTTAGATAA TERM 1856 1289396 - 1289371 - f 100 -13.4 -4.02119 | opp_overlap 1289371 1289369 1289364, overlap 1289369 TATTATAATAAAAGA GGGCAAGAGT TAAAAT ACTCTTGCCC TTCTTTATTTTTAGA TERM 1857 1289371 - 1289396 + F 100 -13.4 -4.52502 | opp_overlap 1289369 1289371, overlap 1289369 1289364 TATTATAATAAAAGA GGGCAAGAGT TAAAAT ACTCTTGCCC TTCTTTATTTTTAGA TERM 1858 1289666 - 1289676 + G 78 -4 -5.36364 | opp_overlap 1289666 AGTTATGTTAAATCA GATT TAA AATC TTTTTGTATTTTTAA TERM 1859 1290888 - 1290858 - g 81 -8.4 -4.16301 | AAGGCACAGAAATAA TCTTTGAACTTCCT TCT AGGAAGGTTAAAGA AAATGAGAAATGTAA CLK_0562 1289543 - 1290976 + | sensor histidine kinase TERM 1860 1291012 - 1291050 + T 100 -9.8 -5.47964 | opp_overlap 1291012 1291015 GTTTTTAGTGATAAA GAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTC TTTTTATTATTTTAT TERM 1861 1291050 - 1291012 - T 93 -9.8 -3.91897 | opp_overlap 1291012, overlap 1291015 GTTTTTAGTGATAAA GAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTC TTTTTATTATTTTAT TERM 1862 1291047 - 1291015 - T 79 -10.1 -2.72745 | opp_overlap 1291012, overlap 1291012 TTTAGTGATAAAGAG GGCGTTTCAAAAT TAAATAT ATTTTGAAACACC TTCTTTTTATTATTT CLK_0563 1291216 - 1291091 - | hypothetical protein TERM 1863 1291584 - 1291635 + H 100 -11.2 -4.08853 | opp_overlap 1291586, overlap 1291585 ATACCGTTAAAACAA AATCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGACC TTATTTAATGTTAAA TERM 1864 1291585 - 1291634 + H 100 -14.7 -3.04589 | opp_overlap 1291586, overlap 1291584 TACCGTTAAAACAAA ATCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGAC CTTATTTAATGTTAA TERM 1865 1291633 - 1291586 - H 100 -16 -5.08255 | opp_overlap 1291585 1291584 ACCGTTAAAACAAAA TCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGA CCTTATTTAATGTTA CLK_0564 1291844 - 1292623 + | hypothetical protein TERM 1866 1292651 - 1292683 + F 84 -5 -5.72622 | opp_overlap 1292649 1292651 TTAGGTTTAAGAAGA GTTGCTAATGAT TATTAAAGT ATCTTTAGCAAC TTTTTTATTTATCCG TERM 1867 1292819 - 1292768 - f 93 -11.6 -3.28924 | opp_overlap 1292768 1292769 1292772, overlap 1292769 1292771 1292797 TACGTCCCTGGATAA CGATTTCTAAGCTTCGGAGGGAGT AAAA ACTCCCTCTGAAGCGAAGAACTCT GTTTATACATATTGT TERM 1868 1292768 - 1292820 + F 100 -13.6 -3.99444 | gap 1, opp_overlap 1292768 1292769 1292771 1292797, overlap 1292769 1292772 TACGTCCCTGGATAA C-GATTTCTAAGCTTCGGAGGGAGT AAAA ACTCCCTCTGAAGCGAAGAACTCTG TTTATACATATTGTT TERM 1869 1292818 - 1292769 - f 100 -15.1 -2.57211 | opp_overlap 1292768 1292769 1292772, overlap 1292768 1292771 1292797 ACGTCCCTGGATAAC GATTTCTAAGCTTCGGAGGGAGT AAAA ACTCCCTCTGAAGCGAAGAACTC TGTTTATACATATTG TERM 1870 1292769 - 1292818 + F 100 -17.3 -3.57639 | opp_overlap 1292769 1292768 1292771 1292797, overlap 1292768 1292772 ACGTCCCTGGATAAC GATTTCTAAGCTTCGGAGGGAGT AAAA ACTCCCTCTGAAGCGAAGAACTC TGTTTATACATATTG TERM 1871 1292816 - 1292771 - f 88 -11.9 -2.82623 | opp_overlap 1292769 1292768 1292772, overlap 1292769 1292768 1292797 GTCCCTGGATAACGA TTTCTAAGCTTCGGAGGGAGT AAAA ACTCCCTCTGAAGCGAAGAAC TCTGTTTATACATAT TERM 1872 1292772 - 1292815 + F 100 -17.6 -2.60511 | opp_overlap 1292771 1292769 1292768 1292797, overlap 1292769 1292768 TCCCTGGATAACGAT TTCTAAGCTTCGGAGGGAGT AAAA ACTCCCTCTGAAGCGAAGAA CTCTGTTTATACATA mgtE 1293254 - 1294588 + | magnesium transporter TERM 1873 1294649 - 1294691 + F 100 -21.1 -3.81473 | opp_overlap 1294649, overlap 1294652 AAATATTGGGAAAAA TAAGCATAGGTATGTTTAA GACAA TTAAACATACCTATGCTTA TTTAAATATATTTTT TERM 1874 1294691 - 1294649 - f 100 -21.1 -4.62904 | opp_overlap 1294649 1294652 AAATATTGGGAAAAA TAAGCATAGGTATGTTTAA GACAA TTAAACATACCTATGCTTA TTTAAATATATTTTT TERM 1875 1294652 - 1294688 + F 100 -18.4 -4.00587 | opp_overlap 1294649, overlap 1294649 TATTGGGAAAAATAA GCATAGGTATGTTTAA GACAA TTAAACATACCTATGC TTATTTAAATATATT TERM 1876 1294799 - 1294776 - f 80 -8.4 -4.20712 | overlap 1294790 TATAATATTTTAAAA TTAAGTAATA AAGA TATTACTTAA AAGTAATAGGGGATT TERM 1877 1295197 - 1295230 + F 100 -12.5 -5.0916 | opp_overlap 1295204 TAAGGGTGGCAACGC GAGTCAATCGTCCCT ACCA AGGGATGGTGGACTC TTTTTGTATTACAAA TERM 1878 1296021 - 1295992 - g 74 -7.3 -4.01939 | gap 1 TAACTCATAATGAAA CTTCTACAGGTATT ATG AAT-CCAGTAGAAG AAATAAGTAAAGTCA TERM 1879 1296056 - 1296045 - g 88 -4.4 -5.68039 | opp_overlap 1296048, overlap 1296047 1296048 AAAGTCATAAAAAAA TACC CAGA GGTA ATCTGGTCATTAGAT CLK_0566 1295589 - 1296662 + | aminotransferase, class V serA 1296887 - 1297831 + | D-3-phosphoglycerate dehydrogenase TERM 1880 1297933 - 1297915 - g 79 -7.4 -4.50761 | opp_overlap 1297915 ATGAAGCTAAAGAAA TAGGGGAT AAA AACCCCTA TTCTTTCCTGCATAT TERM 1881 1297915 - 1297933 + G 74 -7.4 -4.01902 | opp_overlap 1297915 ATGAAGCTAAAGAAA TAGGGGAT AAA AACCCCTA TTCTTTCCTGCATAT TERM 1882 1298650 - 1298640 - g 72 -2.6 -5.35365 | overlap 1298642 AAAATAGAAGAAAAA TTTA TAG TAAA ACCATATGATCCTAA CLK_0568 1297809 - 1299137 + | hypothetical protein TERM 1883 1299683 - 1299717 + F 100 -14.6 -4.71418 | GACAAGTATATTTAT TGAGCTACATCAAATT TAA AGTTTGATGTAGCTTA TTTATTTTAGGTGTT CLK_0569 1300174 - 1301364 + | metallo-beta-lactamase family protein/flavodoxin TERM 1884 1303373 - 1303391 + G 82 -7.6 -4.46212 | overlap 1303388 ATGTAGTAATAATTG TTTACTTA CTG TAAGTAAA TTTTCTGATGGCAGA TERM 1885 1303388 - 1303413 + G 79 -8.5 -3.99592 | opp_overlap 1303392 1303393, overlap 1303373 1303392 TTTACTTACTGTAAG TAAATTTTCTG ATGG CAGAAAGTTTA TTTCTGGTAATAGAT TERM 1886 1305067 - 1305044 - g 86 -2.6 -6.04324 | gap 1, overlap 1305049 TGAAAAAATAAAAAA TTCA-ACAAAG TTA CTTTATTTGAA ATGGTTATATAGATG CLK_0570 1301532 - 1305821 + | putative CoA-substrate-specific enzyme activase TERM 1887 1305842 - 1305894 + T 100 -13.2 -3.61591 | gap 1, opp_overlap 1305847, overlap 1305847 TTTGAAATAAGTAAA TTAA-ATATTAAGGGAGGACACT AAGATAAA AGAGTCCTCCCTTAATATATTAA TTATATAACTTTTTC TERM 1888 1305847 - 1305888 + T 100 -14.7 -3.32023 | opp_overlap 1305847, overlap 1305842 AATAAGTAAATTAAA TATTAAGGGAGGACACT AAGATAAA AGAGTCCTCCCTTAATA TATTAATTATATAAC TERM 1889 1305888 - 1305847 - T 100 -14.7 -4.17109 | opp_overlap 1305847 1305842 AATAAGTAAATTAAA TATTAAGGGAGGACACT AAGATAAA AGAGTCCTCCCTTAATA TATTAATTATATAAC CLK_0571 1307409 - 1305895 - | choline/carnitine/betaine transporter TERM 1890 1306275 - 1306265 - G 80 -6.8 -4.79953 | opp_overlap 1306265 1306263 ATAACAACAAAGAAA GCTG TTT CAGC TCTTTTAATTGCAGT CLK_0572 1307768 - 1308394 + | GntR family transcriptional regulator CLK_0573 1308505 - 1309005 + | hypothetical protein TERM 1891 1309038 - 1309066 + F 100 -9 -5.08086 | ATATTATTTTTTTAG GCTGTTGATAAA CACAT TTTGTCAACGGC TTTTGTATTTTTTAT CLK_0574 1309304 - 1309864 + | putative pyrazinamidase/nicotinamidase CLK_0575 1310022 - 1310333 + | putative phage shock protein CLK_0576 1310409 - 1310873 + | hypothetical protein CLK_0577 1311150 - 1311350 + | hypothetical protein TERM 1892 1311370 - 1311360 - f 73 -2.6 -5.80951 | opp_overlap 1311360 ATTTAAAATAAAAAA TTAA ATT TTAA TAGCTTTTTTCTTAT CLK_0578 1311528 - 1312454 + | TPR repeat-containing protein xpt 1312615 - 1313187 + | xanthine phosphoribosyltransferase TERM 1893 1313360 - 1313399 + F 100 -17 -3.75897 | opp_overlap 1313360, overlap 1313366 AGTAAGCTAAGAAAA GTTAAAGTTATAATTATT ATTA AATAATTATAACTTTAAC TTTAAATTAGGAATT TERM 1894 1313399 - 1313360 - f 100 -17 -4.72631 | opp_overlap 1313360 1313366 AGTAAGCTAAGAAAA GTTAAAGTTATAATTATT ATTA AATAATTATAACTTTAAC TTTAAATTAGGAATT TERM 1895 1313366 - 1313393 + F 93 -10.2 -3.8698 | opp_overlap 1313360, overlap 1313360 CTAAGAAAAGTTAAA GTTATAATTATT ATTA AATAATTATAAC TTTAACTTTAAATTA CLK_0580 1313488 - 1314069 + | hypothetical protein TERM 1896 1314258 - 1314287 + F 73 -2.3 -5.79595 | opp_overlap 1314285, overlap 1314258 TCAACTTATAAGTTT TAGTTATAGTCGA TGAT TTAACTATAATTA TTTTTTATTTTAAAA CLK_0581 1314379 - 1315761 + | putative thiosulfate sulfurtransferase CLK_0582 1315957 - 1316379 + | hypothetical protein CLK_0583 1316723 - 1317826 + | putative transporter CLK_0584 1318007 - 1318336 + | MazG family protein CLK_0585 1318462 - 1320201 + | hypothetical protein TERM 1897 1320252 - 1320234 - f 78 -4.6 -5.5762 | opp_overlap 1320234 1320249 1320251 ACCAAAGATAAAAAA CATTAATG AAC CATTCATG TTTTTAACAAGTTTT CLK_0586 1320481 - 1320621 + | hypothetical protein TERM 1898 1320667 - 1320630 - f 78 -4.4 -5.45802 | opp_overlap 1320630 GCTTTAAAATAAAAA TAAACATTCATAAC TAAATATGAT GTTGTGAATGTTTA TTTTTATTTTATTAT TERM 1899 1320630 - 1320667 + F 90 -6.6 -5.64321 | opp_overlap 1320630 GCTTTAAAATAAAAA TAAACATTCATAAC TAAATATGAT GTTGTGAATGTTTA TTTTTATTTTATTAT TERM 1900 1320910 - 1320890 - g 72 -6.3 -4.34993 | opp_overlap 1320906, overlap 1320881 GAAATATTAAAACAA TTTAAATCT GGA AGATCTAAA GCCTTAGTGTTTTTA CLK_0587 1320803 - 1322002 + | hypothetical protein TERM 1901 1322143 - 1322119 - f 90 -7.1 -5.33866 | opp_overlap 1322119, overlap 1322122 TAAATTTATAAAAAA GATTGTTGCAC TTT GTGCAGCAGTC TTTTTTTCTACTTAT TERM 1902 1322119 - 1322143 + F 100 -11.5 -5.73339 | opp_overlap 1322119 1322122 TAAATTTATAAAAAA GATTGTTGCAC TTT GTGCAGCAGTC TTTTTTTCTACTTAT CLK_0588 1322382 - 1323428 + | ABC transporter, substrate-binding protein TERM 1903 1323472 - 1323449 - gf 95 -10.4 -3.9735 | opp_overlap 1323449 1323448 1323447 ATAGGAAAAAATTAA GGGTATCTAA TAAG CTAGATACCC AATTTTATAATATTT TERM 1904 1323449 - 1323472 + GF 76 -9.7 -2.59254 | opp_overlap 1323449, overlap 1323448 1323447 ATAGGAAAAAATTAA GGGTATCTA ATAAGC TAGATACCC AATTTTATAATATTT TERM 1905 1324739 - 1324759 + GF 74 -6.1 -4.37886 | AACAAATTCCTATGA CTGCTAAGG TAT CTTCAGCAG TTTTATCAGGAATAG CLK_0589 1323430 - 1325118 + | ABC transporter, permease protein CLK_0590 1325081 - 1326016 + | ABC transporter, ATP-binding protein TERM 1906 1326016 - 1326066 + T 100 -8.7 -5.01546 | gap 1, opp_overlap 1326005 1326020, overlap 1326020 CAATTTTTTAAATTA AAAAGGATTTATTGCTAAGGAATA TTTT TA-TACTTAGCAGTAAATCCTTTA TTTTTATATGAATTT TERM 1907 1326062 - 1326020 - T 83 -7.3 -4.98531 | gap 1, opp_overlap 1326020 1326016 TTTTTAAATTAAAAA GGATTTATTGCTAAGGAATA TTTT TA-TACTTAGCAGTAAATCC TTTATTTTTATATGA TERM 1908 1326020 - 1326062 + T 100 -9.5 -5.01422 | gap 1, opp_overlap 1326020, overlap 1326016 TTTTTAAATTAAAAA GGATTTATTGCTAAGGAATA TTTT TA-TACTTAGCAGTAAATCC TTTATTTTTATATGA CLK_0591 1326875 - 1326081 - | hypothetical protein CLK_0592 1327075 - 1328502 + | hypothetical protein TERM 1909 1329678 - 1329653 - g 70 -6.3 -4.18668 | opp_overlap 1329652, overlap 1329656 CTAAAAAATATTAAA TTATTACTAGA GCTG TCTAGTAAAAA ATAATATAAGGATTA CLK_0593 1328516 - 1329682 + | hypothetical protein rpsA 1330081 - 1331244 + | ribosomal protein S1 TERM 1910 1331277 - 1331315 + F 84 -9.3 -3.66117 | gap 2, opp_overlap 1331274, overlap 1331274 1331291 TAATTTAAGCTATAT GCATTACTAAAACACTTAT ATA AT-AG-GTTTTAGTAATGC TATTTATATAGTTAC CLK_0595 1331427 - 1331846 + | thioesterase family protein CLK_0596 1332018 - 1332434 + | hypothetical protein TERM 1911 1332984 - 1332958 - f 71 -8.3 -3.07401 | overlap 1332956 1332954 AAAATATTATATAGA TTTATAATCTA ACAAG TAGATTATAAA AATGGGTTAGATGAA TERM 1912 1333160 - 1333176 + F 72 -5.9 -4.47183 | opp_overlap 1333170 GTAGGAGATATTGTA GTCTTTA AAT TAAAGGC TTTATTTGGGTACTC TERM 1913 1333189 - 1333205 + F 100 -7.3 -6.02919 | GGCTTTATTTGGGTA CTCTTCT GCT AGAAGGG TTTTTTTATTTATGC CLK_0597 1333303 - 1334310 + | putative ABC transporter, substrate-binding protein TERM 1914 1334436 - 1334452 + GF 74 -7.9 -3.78775 | ACATTTCCTTTAGGA GCAGCTG TTG CAGCAGC TTTCCTAGTAAAAGG CLK_0598 1334310 - 1335215 + | ABC transporter, permease protein TERM 1915 1335902 - 1335889 - gf 87 -3.9 -5.90981 | GGAGAGGAAAAAAAA TCTTT AACT AAAGA AAAATTATTAAAATG CLK_0599 1335178 - 1335972 + | ABC transporter, ATP-binding protein TERM 1916 1336046 - 1336063 + F 86 -9.1 -4.48713 | opp_overlap 1336046 1336045 ATTCATCTATAATAG GCAGCTC TTAG GGGCTGC TTTATTATTACTAAA CLK_0600 1336290 - 1336592 + | hypothetical protein TERM 1917 1336613 - 1336640 + F 76 -4.2 -5.36364 | opp_overlap 1336613 TAACTCACGTTAGAA CTGCTTATTTAT GTAA ATAAACTAGCAG TTTTTATATTTTTAA asdA 1337014 - 1338657 + | aspartate 4-decarboxylase TERM 1918 1338696 - 1338746 + T 100 -11 -4.14511 | opp_overlap 1338701 1338739, overlap 1338701 TAATAGAGAAAATTT CAAAATAGATTTAATTTTAATATT TGT GGTGTTAAAATTAAATCTATTTTA TTTTAAAATAAGCTT TERM 1919 1338741 - 1338701 - T 75 -7.3 -4.29656 | opp_overlap 1338696 1338701, overlap 1338739 GAGAAAATTTCAAAA TAGATTTAATTTTAATA TTTGTGG TGTTAAAATTAAATCTA TTTTATTTTAAAATA TERM 1920 1338701 - 1338741 + T 100 -10.9 -5.09259 | opp_overlap 1338701 1338739, overlap 1338696 GAGAAAATTTCAAAA TAGATTTAATTTTAATATT TGT GGTGTTAAAATTAAATCTA TTTTATTTTAAAATA CLK_0602 1339666 - 1338785 - | hypothetical protein TERM 1921 1339962 - 1339993 + H 95 -12.4 -3.62522 | TAAACAGGGTTCTTG GCTTTAGAGGGAGT TTTT ACTTCCACTAAAGC TTATTAACAGAATTC TERM 1922 1339998 - 1340037 + H 73 -8.8 -2.90496 | gap 1, opp_overlap 1340006, overlap 1340002 1340003 1340005 TCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAGA TERM 1923 1340003 - 1340033 + H 79 -9.8 -2.75769 | opp_overlap 1340006, overlap 1340002 1339998 1340005 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1924 1340030 - 1340006 - H 90 -10.1 -3.71552 | opp_overlap 1340005 1340003 1340002 1339998 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1925 1340181 - 1340231 + H 100 -21.8 -4.57569 | opp_overlap 1340165 1340181 1340184 1340194 1340198, overlap 1340182 1340184 AAAAAATATATGATA TTATTTACTTAAACAAATGCTTAT TGC ATAAGCATTTGTTTAAGTAAATGG TTTTTGAGGGGATAA TERM 1926 1340231 - 1340181 - H 100 -17.4 -2.9957 | opp_overlap 1340181 1340182 1340184, overlap 1340165 1340184 1340194 1340198 AAAAAATATATGATA TTATTTACTTAAACAAATGCTTAT TGC ATAAGCATTTGTTTAAGTAAATGG TTTTTGAGGGGATAA TERM 1927 1340182 - 1340230 + H 100 -23.1 -3.3422 | opp_overlap 1340165 1340181 1340184 1340194 1340198, overlap 1340181 1340184 AAAAATATATGATAT TATTTACTTAAACAAATGCTTAT TGC ATAAGCATTTGTTTAAGTAAATG GTTTTTGAGGGGATA TERM 1928 1340228 - 1340184 - H 100 -23.5 -2.70522 | opp_overlap 1340182 1340181 1340184, overlap 1340165 1340181 1340194 1340198 AAATATATGATATTA TTTACTTAAACAAATGCTTAT TGC ATAAGCATTTGTTTAAGTAAA TGGTTTTTGAGGGGA TERM 1929 1340184 - 1340228 + H 100 -23.5 -3.23708 | opp_overlap 1340165 1340184 1340181 1340194 1340198, overlap 1340182 1340181 AAATATATGATATTA TTTACTTAAACAAATGCTTAT TGC ATAAGCATTTGTTTAAGTAAA TGGTTTTTGAGGGGA TERM 1930 1340218 - 1340194 - H 100 -13.1 -3.67296 | opp_overlap 1340184 1340182 1340181, overlap 1340184 1340181 1340198 TATTATTTACTTAAA CAAATGCTTAT TGC ATAAGCATTTG TTTAAGTAAATGGTT TERM 1931 1340214 - 1340198 - H 82 -8.1 -4.46514 | opp_overlap 1340184 1340182 1340181, overlap 1340194 1340184 1340181 ATTTACTTAAACAAA TGCTTAT TGC ATAAGCA TTTGTTTAAGTAAAT TERM 1932 1341034 - 1341019 - g 72 -7.6 -3.56985 | opp_overlap 1341017, overlap 1341017 TATAAAAAAGGAAGA GGATCT AGAA AGATCC GCTGAGTTTTTTTTA CLK_0603 1340249 - 1341346 + | PfkB family kinase TERM 1933 1341468 - 1341456 - g 73 -5.5 -4.64766 | opp_overlap 1341456 GCCATATCCTAAAAA TGCAG AAA CCGCA TTAAATGTAGAAAAA CLK_0604 1341340 - 1342263 + | indigoidine synthase A family protein panE 1342757 - 1343668 + | 2-dehydropantoate 2-reductase TERM 1934 1344515 - 1344503 - g 81 -4.9 -5.42131 | TAATGATATAAAAAA TTCTT TGG AAGAA GAAATAAACACCTTA fchA 1343970 - 1344602 + | methenyltetrahydrofolate cyclohydrolase folD 1344602 - 1345450 + | methylenetetrahydrofolate dehydrogenase TERM 1935 1345469 - 1345510 + F 100 -11.8 -5.22006 | opp_overlap 1345467 1345472, overlap 1345472 TAAAAATTAAAAAGT AAAGCCTGTATCCTATGT TAGTTT ATATAGGATGCAGGCTTA TTTTTCTTATAATAA TERM 1936 1345507 - 1345472 - f 86 -9.1 -4.39092 | opp_overlap 1345469 1345472, overlap 1345467 AAATTAAAAAGTAAA GCCTGTATCCTATGT TAGTTT ATATAGGATGCAGGC TTATTTTTCTTATAA TERM 1937 1345472 - 1345507 + F 100 -13.5 -4.68512 | opp_overlap 1345472 1345467, overlap 1345469 AAATTAAAAAGTAAA GCCTGTATCCTATGT TAGTTT ATATAGGATGCAGGC TTATTTTTCTTATAA TERM 1938 1345715 - 1345699 - f 70 -3.1 -5.42265 | overlap 1345701 GGAAAGTAGAAAAAA CATATTT TTA AAATATA GAAATCATATGGGAT CLK_0608 1345770 - 1346564 + | HAD family hydrolase TERM 1939 1346628 - 1346675 + T 71 -7.3 -3.93597 | opp_overlap 1346629 1346633 1346637, overlap 1346629 1346633 1346637 TAAAATTTAATAACT ATAAATAAACACTATCAAAAC CTATTA GAATTGATAGTGTTTATTTAC TTTAATCTAATTTTT TERM 1940 1346629 - 1346674 + T 85 -10.8 -2.94532 | opp_overlap 1346629 1346633 1346637, overlap 1346628 1346633 1346637 AAAATTTAATAACTA TAAATAAACACTATCAAAAC CTATTA GAATTGATAGTGTTTATTTA CTTTAATCTAATTTT TERM 1941 1346674 - 1346629 - T 90 -11.5 -2.98003 | opp_overlap 1346629 1346628 1346633 1346637, overlap 1346633 1346637 AAAATTTAATAACTA TAAATAAACACTATCAAAACC TATT AGAATTGATAGTGTTTATTTA CTTTAATCTAATTTT TERM 1942 1346670 - 1346633 - T 77 -7.9 -4.14257 | opp_overlap 1346633 1346629 1346628 1346637, overlap 1346629 1346637 TTTAATAACTATAAA TAAACACTATCAAAACC TATT AGAATTGATAGTGTTTA TTTACTTTAATCTAA TERM 1943 1346633 - 1346670 + T 73 -7.2 -4.12738 | opp_overlap 1346629 1346633 1346637, overlap 1346629 1346628 1346637 TTTAATAACTATAAA TAAACACTATCAAAAC CTATTA GAATTGATAGTGTTTA TTTACTTTAATCTAA CLK_0609 1347296 - 1346790 - | putative diamine N-acetyltransferase TERM 1944 1346968 - 1346979 + g 74 -3 -5.39221 | overlap 1346938 AGATAAATTTCATTA CAAT CTTT ATTG TTTTTTAATTCTTCT TERM 1945 1347564 - 1347548 - g 81 -8.1 -4.29928 | AACTAACAGTGAAAA TAGTAGA AAC TCTACTA CAGGATATATGGATA CLK_0610 1347489 - 1347632 + | hypothetical protein TERM 1946 1347774 - 1347761 - g 72 -2.5 -5.36441 | opp_overlap 1347761 GTTGGATACAAAAAA TATTA GCAC TAATA TTACTAAAATATTAG CLK_0611 1347747 - 1348484 + | hypothetical protein TERM 1947 1349324 - 1349308 - g 79 -9.5 -3.43785 | overlap 1349300 TAGTAGAGGAACTAA TTCCTGA AGC TCAGGAA GGAAAGGATACAGAT CLK_0612 1348596 - 1349405 + | ZIP family zinc transporter TERM 1948 1349457 - 1349411 - f 87 -10.3 -3.26031 | gap 1, opp_overlap 1349418 1349419 1349454, overlap 1349409 TTTAGGCTAAACAGA GTT-CTTGGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAAC AGAATTCTTAGGAGT TERM 1949 1349418 - 1349449 + F 100 -21.8 -3.62522 | opp_overlap 1349411 1349409, overlap 1349419 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGAATTC TERM 1950 1349454 - 1349493 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1349411 1349409 1349462, overlap 1349458 1349459 1349461 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 1951 1349459 - 1349489 + F 79 -9.8 -2.75769 | opp_overlap 1349462, overlap 1349458 1349454 1349461 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 1952 1349486 - 1349462 - f 90 -10.1 -3.71552 | opp_overlap 1349461 1349459 1349458 1349454 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1953 1349660 - 1349689 + F 84 -5.1 -5.63517 | opp_overlap 1349655 1349652 1349660, overlap 1349652 TCTTAAATAAGAAAA TACTATGATACAA TAGG TAGTTTCATAGTA TTTTTTATTTAAAAA TERM 1954 1349689 - 1349660 - f 72 -5.1 -5.00196 | opp_overlap 1349660 1349652, overlap 1349655 1349652 TCTTAAATAAGAAAA TACTATGATACAA TAGG TAGTTTCATAGTA TTTTTTATTTAAAAA CLK_0613 1350077 - 1350514 + | rrf2 family protein TERM 1955 1350526 - 1350501 - f 71 -7.1 -3.98224 | gap 1, opp_overlap 1350501 1350500 ATAGCCAAAACATAA TGTACTACA-TA TAA TATTGTAGTACA GTTTATTTAAAATGA TERM 1956 1350867 - 1350854 - g 76 -2.5 -5.58074 | TAATTATGAAAAAAA TATAT AAAA ATATA ACAGAATTAATAGGA cysK 1350844 - 1351773 + | cysteine synthase A CLK_0615 1351818 - 1352486 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 1957 1352876 - 1352860 - g 90 -6.7 -5.62045 | ACAGATAAGAAAAAA GAAAAAT ATT ATTTTTC AAAACCTTATGTTTA CLK_0616 1352521 - 1353345 + | polar amino acid ABC transporter amino acid-binding protein TERM 1958 1353353 - 1353343 - f 70 -2.6 -5.59502 | opp_overlap 1353343 GAAAAAAGTAAAAAA TAAA TTA TTTA TTTGATTAAAGTTAA iscS 1353449 - 1354579 + | cysteine desulfhydrase TERM 1959 1354625 - 1354654 + F 83 -9.3 -3.56568 | opp_overlap 1354618, overlap 1354625 AAACAGAGTTCTTGG CTCCAGAGGGAGT TTTT ACTCCCTCTAAAG TTTAGGAAATGGTTA TERM 1960 1354625 - 1354636 + F 73 -5.8 -4.76041 | opp_overlap 1354618, overlap 1354625 AAACAGAGTTCTTGG CTCC AGAG GGAG TTTTTACTCCCTCTA CLK_0618 1354925 - 1355725 + | hypothetical protein CLK_0619 1355881 - 1356009 + | hypothetical protein trmU-1 1356125 - 1357195 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1961 1357234 - 1357204 - f 100 -9.9 -5.74086 | opp_overlap 1357204 AAAGTAAATAAAAAA GGTTCACAAAATA GATTT TATTTTGTGAGCC TTTTTTATTTGAATA TERM 1962 1357204 - 1357234 + F 100 -12.8 -5.65927 | opp_overlap 1357204 AAAGTAAATAAAAAA GGTTCACAAAATAG ATT TTATTTTGTGAGCC TTTTTTATTTGAATA CLK_0621 1357474 - 1357719 + | AbrB family transcriptional regulator CLK_0622 1357779 - 1358417 + | hypothetical protein CLK_0623 1358387 - 1358506 + | hypothetical protein CLK_0624 1358698 - 1359417 + | LytTr family DNA-binding response regulator CLK_0625 1359634 - 1359458 - | hypothetical protein TERM 1963 1359690 - 1359728 + GH 81 -8.4 -4.15664 | opp_overlap 1359688 1359685 1359691 1359698 1359700 1359719 1359721, overlap 1359691 1359719 1359721 ATAAAAATATTAATT ATTATATATAGTGTATGT TTT GCAAACACTATATATAAC TTTATATATACATTT TERM 1964 1359727 - 1359691 - gH 87 -11.2 -2.91214 | opp_overlap 1359690 1359691 1359719 1359721, overlap 1359688 1359685 1359698 1359700 1359719 1359721 TAAAAATATTAATTA TTATATATAGTGTATG TTTTG CAAACACTATATATAA CTTTATATATACATT TERM 1965 1359691 - 1359727 + GH 93 -11.9 -3.08314 | opp_overlap 1359691 1359688 1359685 1359698 1359700 1359719 1359721, overlap 1359690 1359719 1359721 TAAAAATATTAATTA TTATATATAGTGTATGT TTT GCAAACACTATATATAA CTTTATATATACATT CLK_0626 1359414 - 1360766 + | sensor histidine kinase TERM 1966 1360945 - 1360900 - fH 100 -17.4 -3.93026 | gap 1, opp_overlap 1360901 1360902, overlap 1360901 AATATCTTAATCAAA GCGCACTTGCAAATATTAAAT TTTTT ATTTAATATTTGCAAGTGC-C TTTTAAAAAGAGTGT TERM 1967 1360901 - 1360945 + FH 100 -17.6 -4.08394 | opp_overlap 1360900 1360901, overlap 1360902 ATATCTTAATCAAAG CGCACTTGCAAATATTAAAT TTTTT ATTTAATATTTGCAAGTGCC TTTTAAAAAGAGTGT TERM 1968 1360945 - 1360901 - fH 100 -17.6 -2.95093 | opp_overlap 1360901 1360902, overlap 1360900 ATATCTTAATCAAAG CGCACTTGCAAATATTAAAT TTTTT ATTTAATATTTGCAAGTGCC TTTTAAAAAGAGTGT TERM 1969 1360902 - 1360944 + FH 100 -21.1 -3.04715 | opp_overlap 1360900 1360901, overlap 1360901 TATCTTAATCAAAGC GCACTTGCAAATATTAAAT TTTTT ATTTAATATTTGCAAGTGC CTTTTAAAAAGAGTG bcrA 1361142 - 1362065 + | bacitracin ABC transporter, ATP-binding protein BcrA CLK_0628 1362058 - 1362798 + | hypothetical protein CLK_0629 1363101 - 1364987 + | glycerophosphoryl diester phosphodiesterase family protein CLK_0630 1365340 - 1365507 + | hypothetical protein TERM 1970 1365533 - 1365505 - T 100 -9.8 -4.91873 | gap 1, opp_overlap 1365505 GATACTAACCAAAAA TAGAAGGG-AACT TATA AGTTTCCCTTCTA TTTTTGATTTATACT TERM 1971 1365505 - 1365533 + T 100 -9.8 -5.05505 | gap 1, opp_overlap 1365505 GATACTAACCAAAAA TAGAAGGG-AACT TATA AGTTTCCCTTCTA TTTTTGATTTATACT CLK_0631 1369065 - 1365547 - | pyruvate ferredoxin oxidoreductase TERM 1972 1368303 - 1368287 - G 70 -5.1 -4.59414 | opp_overlap 1368285 1368283 1368287 CCATAATAATCAAAA GGATGAT AAG ATCGTCC TGTAATTTTTTCTAT TERM 1973 1369202 - 1369235 + H 73 -2.7 -5.75945 | gap 1, opp_overlap 1369205, overlap 1369205 TGTAAATTGGATAAA T-AACTAGTAAAGC CAAATGT GTTTTACTAGTTTA TTTTTTTTACAAAAT TERM 1974 1369205 - 1369231 + H 83 -6 -5.33985 | opp_overlap 1369205, overlap 1369202 AAATTGGATAAATAA CTAGTAAAGC CAAATGT GTTTTACTAG TTTATTTTTTTTACA CLK_0632 1369339 - 1369959 + | TetR family transcriptional regulator CLK_0633 1369965 - 1371212 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 1975 1371465 - 1371451 - f 79 -7.2 -4.64766 | opp_overlap 1371451 1371450 1371445 TTTATATCTGAAAAA TCATAG AAA CTATGA GTTTTGTTTCATGTA CLK_0634 1371508 - 1372983 + | hypothetical protein TERM 1976 1373032 - 1372984 - f 100 -18.7 -3.05596 | opp_overlap 1372991 1373028, overlap 1372986 1372991 TATTGTGGGACCTAA TACAAAATGAGCTAGTAAAATAT ATT AAATTTTACTAGCTCATTTTATA TAAAAATATAATTGT TERM 1977 1373030 - 1372986 - f 100 -16.9 -3.08679 | opp_overlap 1372991 1373028, overlap 1372984 1372991 TTGTGGGACCTAATA CAAAATGAGCTAGTAAAATAT ATT AAATTTTACTAGCTCATTTTA TATAAAAATATAATT TERM 1978 1372991 - 1373025 + F 100 -14.6 -4.53303 | opp_overlap 1372986 1372984 1372991 GGACCTAATACAAAA TGAGCTAGTAAAATAT ATT AAATTTTACTAGCTCA TTTTATATAAAAATA TERM 1979 1373025 - 1372991 - f 100 -14.6 -4.68724 | opp_overlap 1372991, overlap 1372986 1372984 GGACCTAATACAAAA TGAGCTAGTAAAATAT ATT AAATTTTACTAGCTCA TTTTATATAAAAATA TERM 1980 1373410 - 1373394 - f 76 -2.3 -5.84432 | opp_overlap 1373396, overlap 1373396 GATAACATAAAAAAA TCGTATT TAG AATACTA TTAAATAATGAATAC TERM 1981 1373965 - 1373982 + G 70 -6.3 -4.15222 | gap 1, overlap 1373965 TATATAGATACTTTT GGG-CTAG AAA CTAGACCC TTTGTTCAGGAAAAT CLK_0635 1373569 - 1375296 + | amine oxidase, flavin-containing TERM 1982 1375300 - 1375333 + T 86 -9.2 -4.14908 | opp_overlap 1375300 1375304, overlap 1375304 TATAAAGTTTAGGAA TAAAGAAGTATATT TTATTT AATATGCTTCTTTA TTTATGCTTATATTT TERM 1983 1375304 - 1375329 + T 71 -5.6 -4.63526 | opp_overlap 1375304 1375300, overlap 1375300 AAGTTTAGGAATAAA GAAGTATATT TTATTT AATATGCTTC TTTATTTATGCTTAT TERM 1984 1375388 - 1375376 - T 70 -4.9 -4.8048 | opp_overlap 1375367 TCTTTATATTAAAAA TATCT TTT AGATA TGAAAATGAATAAGT CLK_0636 1376431 - 1375541 - | AraC family transcriptional regulator CLK_0637 1376631 - 1378007 + | sugar transporter family protein CLK_0638 1378021 - 1379349 + | O-glycosyl hydrolase, family protein TERM 1985 1379359 - 1379380 + F 79 -7.2 -4.62336 | opp_overlap 1379357 1379359 GAATAATTATTAAGA GGATGCCC GAGTAA GGGCTTCC TTTTTCAAATAAGCT CLK_0639 1379413 - 1380354 + | ROK family protein TERM 1986 1381206 - 1381187 - gf 80 -2.3 -5.75945 | overlap 1381202 ATTCTTTAAAAAAAA TAATATT AAGTTA AATATTA CAAATAAAGATATAG CLK_0640 1380357 - 1381802 + | glycosy hydrolase family protein CLK_0641 1381756 - 1381896 + | hypothetical protein CLK_0642 1381980 - 1382741 + | putative HTH-type transcriptional regulator YciT CLK_0643 1383925 - 1383026 - | pyruvate formate-lyase-activating enzyme TERM 1987 1384213 - 1384200 - g 72 -6.7 -4.07246 | opp_overlap 1384211, overlap 1384211 TTATTGGAAACTAAA GCATC AATT GATGC TACAAGAGCAATTCT CLK_0644 1384131 - 1386539 + | pyruvate formate-lyase TERM 1988 1386945 - 1386926 - g 76 -9.3 -3.14962 | opp_overlap 1386925, overlap 1386924 CTAGCAGGAAAAGCA GGTGCTG ATTATG CAGCACC ATATATTAATAGAAT CLK_0645 1386554 - 1387231 + | fructose-6-phosphate aldolase 2 TERM 1989 1387242 - 1387263 + F 93 -11.7 -3.28745 | opp_overlap 1387242 1387245, overlap 1387245 TTTAAAAATAGTAAA GAAGGTAAG GAGA CTTACCTTC TTAGATTGTTGACGA TERM 1990 1387263 - 1387242 - f 100 -11.7 -4.13748 | opp_overlap 1387242 1387245, overlap 1387245 TTTAAAAATAGTAAA GAAGGTAAG GAGA CTTACCTTC TTAGATTGTTGACGA TERM 1991 1387245 - 1387260 + F 73 -7.6 -3.77953 | opp_overlap 1387242 1387245, overlap 1387242 AAAAATAGTAAAGAA GGTAAG GAGA CTTACC TTCTTAGATTGTTGA TERM 1992 1387260 - 1387245 - f 77 -7.6 -4.15899 | opp_overlap 1387245 1387242, overlap 1387242 AAAAATAGTAAAGAA GGTAAG GAGA CTTACC TTCTTAGATTGTTGA TERM 1993 1387394 - 1387441 + F 79 -7.4 -4.61633 | overlap 1387396 TTAGAGTAGGAAAGA TGGTGATAATTTAAGGACTG AATTTAAG TAGTTTTTAAATTATCACTA TTTTTAAGGGTATCT TERM 1994 1387396 - 1387439 + F 75 -7.8 -3.91908 | overlap 1387394 AGAGTAGGAAAGATG GTGATAATTTAAGGACTG AATTTAAG TAGTTTTTAAATTATCAC TATTTTTAAGGGTAT TERM 1995 1387633 - 1387654 + F 76 -6.1 -4.78572 | opp_overlap 1387632 1387635 1387642, overlap 1387632 ATCATGTAAATAAGT TATAAATAT TATA ATATTTATA TTTTATTAATTAGGA amyB 1387870 - 1389498 + | beta-amylase TERM 1996 1389875 - 1389861 - f 71 -5.6 -4.70772 | opp_overlap 1389874 ACATATCTAATAAAA CGAGGT GGT ACCACG TGAGTATAACTCCCG TERM 1997 1389916 - 1389885 - f 74 -8.1 -3.4178 | gap 1, opp_overlap 1389874 1389886, overlap 1389886 ACCACGTGAGTATAA CTCCCGTCCTCTAG TTAAT CTAGAG-ACGGGAT TTTTTGCATTTAAAA TERM 1998 1389915 - 1389886 - f 86 -11.6 -2.64747 | gap 1, opp_overlap 1389874 1389886, overlap 1389885 CCACGTGAGTATAAC TCCCGTCCTCTAG TTAAT CTAGAG-ACGGGA TTTTTTGCATTTAAA TERM 1999 1389886 - 1389915 + F 100 -11.6 -5.22039 | gap 1, opp_overlap 1389886 1389885, overlap 1389874 CCACGTGAGTATAAC TCCCGTCCTCTAG TTAAT CTAGAG-ACGGGA TTTTTTGCATTTAAA tyrS 1390275 - 1391477 + | tyrosyl-tRNA synthetase TERM 2000 1391564 - 1391537 - f 76 -4.3 -5.38249 | opp_overlap 1391537 ATTAATTATAAAAAA CATTATCATTT AATTTA AAATGGTAATG TTTTTTTTATGAGAT TERM 2001 1391537 - 1391564 + F 93 -6.5 -5.94713 | opp_overlap 1391537 ATTAATTATAAAAAA CATTATCATTT AATTTA AAATGGTAATG TTTTTTTTATGAGAT TERM 2002 1391732 - 1391711 - f 82 -10.3 -2.91383 | opp_overlap 1391708, overlap 1391728 ATTGTTAGTTATATA GTTAGTTAC ATAA GTAACTAAC CAATTAGGTAGCGAG TERM 2003 1392030 - 1392020 - g 91 -4 -6.07374 | AGAAAAAAGAAAAAA CAAA TTT TTTG ATAGCTACATTTTAA CLK_0648 1391757 - 1392128 + | GntR family transcriptional regulator CLK_0649 1392121 - 1392993 + | ABC transporter, ATP-binding protein CLK_0650 1392994 - 1393743 + | hypothetical protein TERM 2004 1393810 - 1393850 + T 100 -10 -5.71712 | gap 1, opp_overlap 1393810 TGTAAAATAAATAAA TTTAAGCTTCAAG-GGAGT TAAA ACTCTACTAGAAGCTTAAA TTTTTTTGTGTAAAA TERM 2005 1393850 - 1393810 - T 86 -7.8 -4.8743 | gap 1, opp_overlap 1393810 TGTAAAATAAATAAA TTTAAGCTTCAAG-GGAGT TAAA ACTCTACTAGAAGCTTAAA TTTTTTTGTGTAAAA CLK_0651 1394247 - 1393879 - | hypothetical protein TERM 2006 1394166 - 1394156 - G 82 -6.8 -4.98436 | opp_overlap 1394156, overlap 1394157 CCAACAGGAGAAAAA CCAC CTG GTGG TGTCATAAAAGGTGG CLK_0652 1394303 - 1394503 + | hypothetical protein TERM 2007 1395306 - 1395290 - g 70 -3.7 -5.07523 | overlap 1395281 GATATACAAAGAAAA CCTTGTT TTG AAAAAGG CGTAAAAGTTTTTGA CLK_0653 1394594 - 1395430 + | hypothetical protein TERM 2008 1395471 - 1395510 + F 100 -15.4 -4.62471 | opp_overlap 1395464 1395476 1395479, overlap 1395474 ATAATAAATAATGCT TAAGATAATTTAGGAGAA GGAT TTCTCCTAAATTATCTAA TTTTATATGTGGATT TERM 2009 1395474 - 1395507 + F 100 -17.1 -3.24281 | opp_overlap 1395464 1395476 1395479, overlap 1395471 ATAAATAATGCTTAA GATAATTTAGGAGAA GGAT TTCTCCTAAATTATC TAATTTTATATGTGG TERM 2010 1395505 - 1395476 - f 100 -13.9 -3.08349 | opp_overlap 1395474 1395471, overlap 1395464 1395479 AAATAATGCTTAAGA TAATTTAGGAGAA GGAT TTCTCCTAAATTA TCTAATTTTATATGT TERM 2011 1395502 - 1395479 - f 95 -11.2 -3.67498 | opp_overlap 1395474 1395471, overlap 1395476 1395464 TAATGCTTAAGATAA TTTAGGAGAA GGAT TTCTCCTAAA TTATCTAATTTTATA CLK_0654 1395616 - 1398540 + | hypothetical protein CLK_0655 1398618 - 1400132 + | glycosy hydrolase family protein TERM 2012 1400171 - 1400153 - f 75 -8.8 -3.28984 | opp_overlap 1400153 1400168 TAATTTAACTAGTAA CCCAGTAC ATG GTGCTGGG TCTCTCATAATTTTA TERM 2013 1400153 - 1400171 + F 87 -11 -3.00544 | opp_overlap 1400153, overlap 1400168 TAATTTAACTAGTAA CCCAGTAC ATG GTGCTGGG TCTCTCATAATTTTA CLK_0656 1400307 - 1401566 + | putative sensory box-containing diguanylate cyclase TERM 2014 1401622 - 1401669 + F 84 -9.6 -3.70102 | overlap 1401619 1401659 TTTAATAGAAATTAG GGATGTATTTTTATAGATGATA AGTA TATTATTTATATAAATATATCC TATTTAATTTTACAT sdhB 1401967 - 1402641 + | L-serine dehydratase, iron-sulfur-dependent, beta subunit sdhA 1402654 - 1403544 + | L-serine dehydratase, iron-sulfur-dependent, alpha subunit TERM 2015 1403669 - 1403705 + T 73 -4.5 -5.22481 | opp_overlap 1403669, overlap 1403664 ATTTTAAATGAAAAA GCTATGGAATATAGG ATTAATA CCTTAATTTCATAGC TTTTATTTGTTTATA TERM 2016 1403722 - 1403759 + T 95 -10.3 -4.06993 | opp_overlap 1403724 TTTATTTGTTTATAT TATTTATTTGTATTTAA TTAA TTGAGTACAAATAAATA TTGTTTACTATCTAG TERM 2017 1403852 - 1403830 - T 91 -10.8 -3.71991 | opp_overlap 1403830, overlap 1403817 TATAAAGTTTAATAA TCTTTAGAAA TGT TTTCTAAAGA TTTGGCTGTAGAAGT TERM 2018 1403830 - 1403852 + T 91 -10.8 -3.7108 | opp_overlap 1403817 1403830 TATAAAGTTTAATAA TCTTTAGAAA TGT TTTCTAAAGA TTTGGCTGTAGAAGT CLK_0659 1404242 - 1403823 - | hypothetical protein CLK_0660 1404471 - 1404680 + | hypothetical protein TERM 2019 1404791 - 1404745 - T 100 -12.7 -4.08689 | opp_overlap 1404745 1404750 1404790, overlap 1404750 CACTTAATAATTAAA TGAAAGCTATGAATTAAGAAA GTAAT TTTCTAAATTCATAGCTTTTA ATCTTAATAGTAAGC TERM 2020 1404745 - 1404791 + T 100 -15.6 -2.50016 | opp_overlap 1404745 1404750, overlap 1404750 1404790 CACTTAATAATTAAA TGAAAGCTATGAATTAAGAAAG TAA TTTTCTAAATTCATAGCTTTTA ATCTTAATAGTAAGC TERM 2021 1404786 - 1404750 - T 100 -12.6 -4.17109 | opp_overlap 1404745 1404750, overlap 1404745 AATAATTAAATGAAA GCTATGAATTAAGAAA GTAAT TTTCTAAATTCATAGC TTTTAATCTTAATAG TERM 2022 1404750 - 1404786 + T 100 -13.3 -4.44797 | opp_overlap 1404750 1404745, overlap 1404745 AATAATTAAATGAAA GCTATGAATTAAGAAAG TAA TTTTCTAAATTCATAGC TTTTAATCTTAATAG CLK_0661 1404982 - 1404839 - | hypothetical protein TERM 2023 1404993 - 1405005 + H 70 -6.3 -4.35474 | opp_overlap 1404992 TTCATTAAAAATACC TCCTT AAA AAGGA TTATTATTTTATTTA CLK_0662 1405066 - 1405185 + | hypothetical protein CLK_0663 1405255 - 1405839 + | hypothetical protein TERM 2024 1405832 - 1405870 + T 100 -11.2 -4.7878 | opp_overlap 1405832 1405830 1405840, overlap 1405833 CTACAGAAGAAAAGG CTATATAAGGAGAGTGTG ATA CACACTTTCCTTATAAAA TTTCTTTTATAACTC TERM 2025 1405870 - 1405832 - T 83 -11.2 -2.69195 | opp_overlap 1405832 1405833, overlap 1405830 1405840 CTACAGAAGAAAAGG CTATATAAGGAGAGTGTG ATA CACACTTTCCTTATAAAA TTTCTTTTATAACTC TERM 2026 1405833 - 1405869 + T 100 -14.7 -3.46183 | opp_overlap 1405832 1405830 1405840, overlap 1405832 TACAGAAGAAAAGGC TATATAAGGAGAGTGTG ATA CACACTTTCCTTATAAA ATTTCTTTTATAACT TERM 2027 1405862 - 1405840 - T 91 -10.6 -3.54721 | opp_overlap 1405833 1405832, overlap 1405832 1405830 GAAAAGGCTATATAA GGAGAGTGTG ATA CACACTTTCC TTATAAAATTTCTTT CLK_0664 1406831 - 1405863 - | dipeptidase family protein CLK_0665 1407727 - 1407200 - | hypothetical protein TERM 2028 1407829 - 1407783 - R 100 -16.4 -3.28497 | opp_overlap 1407788 1407791, overlap 1407788 TTACTTTAAATTTAA CAAAAGAATCATTATATAGTAT CTT ATTCTATATAATGATTCTTTTA AGATTGTCATTTATT TERM 2029 1407788 - 1407824 + r 100 -14.1 -4.22338 | opp_overlap 1407788 1407783, overlap 1407791 TTAAATTTAACAAAA GAATCATTATATAGTAT CTT ATTCTATATAATGATTC TTTTAAGATTGTCAT TERM 2030 1407824 - 1407788 - R 100 -14.1 -4.75309 | opp_overlap 1407788 1407791, overlap 1407783 TTAAATTTAACAAAA GAATCATTATATAGTAT CTT ATTCTATATAATGATTC TTTTAAGATTGTCAT TERM 2031 1407791 - 1407821 + r 95 -10 -4.22535 | opp_overlap 1407788 1407783, overlap 1407788 AATTTAACAAAAGAA TCATTATATAGTAT CTT ATTCTATATAATGA TTCTTTTAAGATTGT CLK_0666 1408684 - 1407836 - | putative oligopeptide ABC transporter, permease protein CLK_0667 1409643 - 1408690 - | putative oligopeptide ABC transporter, permease protein TERM 2032 1409810 - 1409780 - R 72 -4.7 -4.91473 | opp_overlap 1409780 TAATTTAAAAATAAA CGGTATCAAAAGG GTAAT CCAATTAATACCG TCCTTTTAACTATGA CLK_0668 1411429 - 1409831 - | putative oligopeptide ABC transporter, oligopeptide-binding protein TERM 2033 1410536 - 1410560 + g 76 -8.8 -3.50572 | opp_overlap 1410535, overlap 1410529 TTTTTTATCTAAACC TTTAGTTTTG CAATT CAAAACTAAA TTATCTACCATACCT TERM 2034 1411661 - 1411677 + H 100 -8.1 -5.55769 | opp_overlap 1411650 ATTATTAAAGCCCAG GGATTTA ACT TAAATCC TTTTTTATTGTGCAA CLK_0669 1411719 - 1411880 + | hypothetical protein cotJB 1411914 - 1412186 + | spore coat peptide assembly protein CotJB cotJC 1412217 - 1412789 + | spore coat peptide assembly protein CotJC TERM 2035 1412859 - 1412894 + F 74 -4.9 -5.24799 | opp_overlap 1412859 ATAATTATAAAGTAA CAATCCAAATTAAAT GGTATA ATTTTCTTTGGATTG TTTTTATATTTGTAA TERM 2036 1412898 - 1412929 + F 85 -10.5 -3.00774 | opp_overlap 1412914 1412925, overlap 1412925 TTCTTTGGATTGTTT TTATATTTGTAAC TCATTT GTTACAAATATAA TGTATAATTACAGTA CLK_0672 1412993 - 1414012 + | hypothetical protein TERM 2037 1414447 - 1414436 - g 78 -3 -5.50499 | overlap 1414443 TGATAGTGAAAAAAA TGAA AAAT TTCA GCTGGAAGATGAAAA TERM 2038 1414461 - 1414443 - g 77 -4.6 -5.31158 | overlap 1414436 GAAAAAAATGAAAAA TTTCAGCT GGA AGATGAAA ATGGGAAAAAAACTA CLK_0673 1414029 - 1415093 + | hypothetical protein TERM 2039 1415260 - 1415300 + F 79 -3.6 -5.69473 | gap 2, overlap 1415264 1415265 TATATTTAATTATAG CAGTTCCTTTTGTTATTGAG GTT TTCA-TAATAAAAGG-GCTG TTTTTTTATAATCTA TERM 2040 1415650 - 1415640 - g 85 -2.6 -5.86609 | TTAAAAAAATAAAAA TATA CGA TATA GATGATAGGGAATTA CLK_0674 1415516 - 1416007 + | hypothetical protein TERM 2041 1416185 - 1416225 + T 83 -7.5 -4.69549 | TCAATTTTTTTTGAT TTACTCCTAGATCCCCACG TGC TGTGAGGAACTAGGTGGAA TTTTAATTTTAAATT CLK_0675 1416642 - 1416250 - | hypothetical protein dut 1416994 - 1417620 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 2042 1417662 - 1417627 - T 75 -8.4 -3.53836 | opp_overlap 1417633, overlap 1417632 1417633 GTAAAATAATATTAA TAAAAGGTGCTGAAGG TTAA CTTTCAGCACTTTTCA TTGTATATATTATTT TERM 2043 1417657 - 1417632 - T 76 -6.1 -4.79657 | opp_overlap 1417633, overlap 1417627 1417633 ATAATATTAATAAAA GGTGCTGAAGG TTAA CTTTCAGCACT TTTCATTGTATATAT TERM 2044 1417633 - 1417656 + T 100 -11.8 -4.5464 | opp_overlap 1417632 1417627 1417633 TAATATTAATAAAAG GTGCTGAAGG TTAA CTTTCAGCAC TTTTCATTGTATATA TERM 2045 1417656 - 1417633 - T 82 -9.6 -3.46167 | opp_overlap 1417633, overlap 1417632 1417627 TAATATTAATAAAAG GTGCTGAAGG TTAA CTTTCAGCAC TTTTCATTGTATATA CLK_0677 1417868 - 1417677 - | small acid-soluble spore protein, H-type TERM 2046 1418276 - 1418314 + r 79 -4.7 -5.56673 | opp_overlap 1418280 1418291, overlap 1418278 TCCTAAGCTTTAAAT TTAACTTCACCTAAATA AATAA TATTTAGGTGAAGAGCA TTTTTTATTATGAAT TERM 2047 1418310 - 1418280 - R 100 -14.3 -3.28269 | opp_overlap 1418278 1418276, overlap 1418291 AAGCTTTAAATTTAA CTTCACCTAAATA AATAA TATTTAGGTGAAG AGCATTTTTTATTAT TERM 2048 1418349 - 1418383 + r 75 -6.7 -4.53777 | gap 1, opp_overlap 1418356, overlap 1418345 1418356 GATAAAAAAATTATA TTA-AAAAGCTAGTCT ATTA AGACTAGCTTTAATAA TTATTTTTCATTAGG TERM 2049 1418375 - 1418356 - R 100 -10.8 -4.85177 | opp_overlap 1418349 1418345 1418356 AAATTATATTAAAAA GCTAGTCT ATTA AGACTAGC TTTAATAATTATTTT TERM 2050 1418356 - 1418375 + r 95 -10.8 -3.91642 | opp_overlap 1418356, overlap 1418349 1418345 AAATTATATTAAAAA GCTAGTCT ATTA AGACTAGC TTTAATAATTATTTT TERM 2051 1418400 - 1418416 + r 71 -6.6 -4.09378 | overlap 1418398 TATTTTTCATTAGGA GCTTTC ATAAA GAAAGC TATTTTATCTTTTTC CLK_0678 1419121 - 1418384 - | hypothetical protein TERM 2052 1418671 - 1418681 + g 75 -4 -5.24989 | CTAATAATCCTTTAG TACT TAT AGTA TTTTTTGGTATATCA TERM 2053 1419682 - 1419637 - g 91 -10.7 -3.77489 | opp_overlap 1419642, overlap 1419642 1419645 AAGTTAATATCTAAA TACTACAAGCACGAATTAATT AACT AATTAATTCGTGCTTGTTTTC TATTATTGAAAGTTG CLK_0679 1419517 - 1419663 + | hypothetical protein TERM 2054 1419642 - 1419677 + T 100 -19.4 -4.79752 | opp_overlap 1419637 1419642 1419645 AATATCTAAATACTA CAAGCACGAATTAATT AACT AATTAATTCGTGCTTG TTTTCTATTATTGAA TERM 2055 1419677 - 1419642 - T 100 -19.4 -2.87239 | opp_overlap 1419642, overlap 1419637 1419645 AATATCTAAATACTA CAAGCACGAATTAATT AACT AATTAATTCGTGCTTG TTTTCTATTATTGAA TERM 2056 1419674 - 1419645 - T 100 -15.3 -3.57239 | opp_overlap 1419642, overlap 1419642 1419637 ATCTAAATACTACAA GCACGAATTAATT AACT AATTAATTCGTGC TTGTTTTCTATTATT CLK_0680 1420313 - 1419780 - | putative transcriptional regulator TERM 2057 1420462 - 1420449 - H 72 -3.9 -5.38951 | AAGTGATATAAAAAA TTCAT TTAT ATGAA AATAATAGAAATAAA CLK_0681 1420736 - 1421785 + | putative transcriptional regulator TERM 2058 1421940 - 1421967 + F 90 -7.8 -5.055 | TATGAAAAAAGTTAA GGGATACTGTTT TTGC AAATGGTGTCCC TTTTTTAGCCCTTAA CLK_0682 1422455 - 1422715 + | hypothetical protein CLK_0683 1423084 - 1423200 + | hypothetical protein TERM 2059 1423468 - 1423509 + T 100 -13.1 -3.5774 | opp_overlap 1423468 TTTCCACCACGGAAA GGCACCATCCTTAATCTCC TTAT GAAGACTAAAGATGGTGCC TTTAAGAAATTAGGT TERM 2060 1423509 - 1423468 - T 100 -19.7 -3.68351 | opp_overlap 1423468 TTTCCACCACGGAAA GGCACCATCCTTAATCTCC TTAT GAAGACTAAAGATGGTGCC TTTAAGAAATTAGGT CLK_0684 1425104 - 1423668 - | sodium:alanine symporter family protein CLK_0685 1425134 - 1425277 + | hypothetical protein TERM 2061 1425726 - 1425716 - f 73 -2.6 -5.64274 | opp_overlap 1425716 TGATTTATAAAAAAA TATA ATA TATA CTGGTTTTGTTGGTA TERM 2062 1425885 - 1425908 + F 100 -11.2 -5.27769 | opp_overlap 1425885 1425889 TATTTAAAGCAAAAA GAAACACAAT CGTA ATTGTGTTTC TTTTTACTTTTTTAT TERM 2063 1425908 - 1425885 - f 100 -11.2 -5.00138 | opp_overlap 1425885, overlap 1425889 TATTTAAAGCAAAAA GAAACACAAT CGTA ATTGTGTTTC TTTTTACTTTTTTAT TERM 2064 1425904 - 1425889 - f 78 -6.2 -5.00388 | opp_overlap 1425885, overlap 1425885 TAAAGCAAAAAGAAA CACAAT CGTA ATTGTG TTTCTTTTTACTTTT TERM 2065 1426561 - 1426547 - g 75 -5.8 -4.73613 | opp_overlap 1426547 TGAGGATGAAGAAAA GATAAT ACA ATTATC TAAATTTAAAGCTTT CLK_0686 1426272 - 1426580 + | hypothetical protein TERM 2066 1426751 - 1426720 - f 95 -11.2 -3.61774 | opp_overlap 1426720 CATAATATGGTTAAA CATTTCATAAAAAC GAAT ATTTTTATGAAATG TTTTTTTTATTGATA TERM 2067 1426720 - 1426751 + F 100 -10.5 -6.13503 | opp_overlap 1426720 CATAATATGGTTAAA CATTTCATAAAAA CGAATA TTTTTATGAAATG TTTTTTTTATTGATA TERM 2068 1426903 - 1426919 + F 76 -2.9 -5.88565 | opp_overlap 1426903 1426905, overlap 1426905 ATAGAAATTAAAGAA CAGGACC AAT GGTTCTA TTTTTTTATTATCAG TERM 2069 1426905 - 1426917 + F 71 -5.5 -4.57921 | opp_overlap 1426903 1426905, overlap 1426903 AGAAATTAAAGAACA GGACC AAT GGTTC TATTTTTTTATTATC CLK_0687 1427166 - 1427369 + | hypothetical protein TERM 2070 1427500 - 1427476 - f 93 -7.2 -5.71712 | opp_overlap 1427476 CTCCATATAAAAAAA GAACTCCATT TTATT ACTGGAGTTC TTTTTGTATGGAATT TERM 2071 1427476 - 1427500 + F 83 -7.2 -4.98522 | opp_overlap 1427476 CTCCATATAAAAAAA GAACTCCATT TTATT ACTGGAGTTC TTTTTGTATGGAATT CLK_0688 1427659 - 1427862 + | putative DNA-binding protein TERM 2072 1427838 - 1427867 + F 85 -6 -5.49579 | opp_overlap 1427838 AAATATAAAAATGGA GAATATTATTTA CTTAGA TGAATAATATTC TTTTATTTTTTATAG CLK_0689 1427981 - 1428127 + | hypothetical protein TERM 2073 1428168 - 1428143 - f 83 -3.4 -6.09196 | gap 1, opp_overlap 1428147, overlap 1428147 TGGAAAATAAAAAAA TAAAGCCTAGC AGAAG GCTAGACT-TA TCCCAAGTTGCTAAA TERM 2074 1428165 - 1428147 - f 87 -6.7 -5.36181 | opp_overlap 1428147, overlap 1428143 AAATAAAAAAATAAA GCCTAGC AGAAG GCTAGAC TTATCCCAAGTTGCT CLK_0690 1428924 - 1429181 + | hypothetical protein TERM 2075 1429204 - 1429251 + F 100 -8.2 -5.9003 | gap 1, opp_overlap 1429204 AATTTACTAAAGCAA CATAAATAAAAA-CTCTAGAG GATTAAG CTTTGGAGCTTTTTATTTATG TTTTTTTATTACTTT CLK_0691 1429465 - 1430211 + | putative lipoprotein CLK_0692 1430529 - 1430756 + | rubredoxin TERM 2076 1430746 - 1430798 + T 100 -26.3 -3.03771 | opp_overlap 1430746 1430750 1430754 1430759, overlap 1430750 1430759 CTATAGATGAAGCTA TAAATTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATGAATTTA TATTCAGAACTATAG TERM 2077 1430798 - 1430746 - T 100 -24.1 -2.59686 | opp_overlap 1430746 1430750 1430759, overlap 1430750 1430754 1430759 CTATAGATGAAGCTA TAAATTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATGAATTTA TATTCAGAACTATAG TERM 2078 1430794 - 1430750 - T 100 -20.5 -3.99228 | opp_overlap 1430746 1430750 1430759, overlap 1430746 1430754 1430759 AGATGAAGCTATAAA TTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATGAA TTTATATTCAGAACT TERM 2079 1430750 - 1430794 + T 100 -22.7 -4.19177 | opp_overlap 1430750 1430746 1430754 1430759, overlap 1430746 1430759 AGATGAAGCTATAAA TTTATAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTATGAA TTTATATTCAGAACT TERM 2080 1430790 - 1430754 - T 100 -21.3 -2.7204 | opp_overlap 1430750 1430746 1430759, overlap 1430750 1430746 1430759 GAAGCTATAAATTTA TAAAATAAGGAAGTTGC GAT GCAACTTCCTTATTTTA TGAATTTATATTCAG TERM 2081 1430785 - 1430759 - T 100 -16.8 -4.52803 | opp_overlap 1430750 1430746 1430759, overlap 1430754 1430750 1430746 TATAAATTTATAAAA TAAGGAAGTTGC GAT GCAACTTCCTTA TTTTATGAATTTATA TERM 2082 1430759 - 1430785 + T 100 -16.8 -4.52803 | opp_overlap 1430759 1430754 1430750 1430746, overlap 1430750 1430746 TATAAATTTATAAAA TAAGGAAGTTGC GAT GCAACTTCCTTA TTTTATGAATTTATA CLK_0693 1432248 - 1430788 - | putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent CLK_0694 1433229 - 1432288 - | putative thioredoxin reductase TERM 2083 1432755 - 1432742 - G 72 -4.5 -4.89063 | opp_overlap 1432742 TTAGTTAAAAACAAA GCCTC TTCT AAGGC GGCATTTCCACCACC TERM 2084 1433247 - 1433261 + H 72 -8.6 -3.21466 | overlap 1433244 AAAATCACCCCTTAT TACCCT TAT AGGGTA TATATTAATTATACT TERM 2085 1433491 - 1433477 - H 70 -4.4 -5.00895 | opp_overlap 1433477 TTTATTATAGAAAAA TTTATT ATC AATAAA TTTAATAAAATTTCA TERM 2086 1433584 - 1433564 - H 87 -7 -5.252 | TATGGTTACAAAAAA TCTATAAG GAATA CTTATAGA CACTATTTGGAAACA TERM 2087 1433918 - 1433884 - H 100 -11.7 -4.13945 | opp_overlap 1433886, overlap 1433886 ACTCTCAGGTTAAAA TACAGAGATAAAAGT TATGG ACTTTTATCTCTGTT TTTTTGCGTAAGTAA TERM 2088 1433886 - 1433916 + H 100 -15 -5.47821 | opp_overlap 1433884 1433886 TCTCAGGTTAAAATA CAGAGATAAAAGTT ATG GACTTTTATCTCTG TTTTTTTGCGTAAGT TERM 2089 1433916 - 1433886 - H 100 -14.3 -3.6692 | opp_overlap 1433886, overlap 1433884 TCTCAGGTTAAAATA CAGAGATAAAAGT TATGG ACTTTTATCTCTG TTTTTTTGCGTAAGT grdX 1433990 - 1434367 + | GrdX protein TERM 2090 1434390 - 1434368 - f 72 -8 -3.5782 | opp_overlap 1434367 1434368 AATGCACTAAATTAA TTTTATATAA GAT TTATATAAAA ATTGCTAGAATCATT TERM 2091 1434641 - 1434627 - g 70 -5 -4.57755 | AGCCAGGAGATAAAA CTAGAA TTA TTCCAG TAAAAGATGTAATAG grdE 1434458 - 1435744 + | glycine reductase complex component B, alpha and beta subunits TERM 2092 1436026 - 1436036 + G 74 -6.8 -4.30576 | GCGGATGTGTTTGTA GCAG GAC CTGC TTTTAATGCTGGAAG grdB 1435777 - 1437078 + | glycine reductase complex component B, gamma subunit, selenocysteine-containing trxB 1437243 - 1438184 + | thioredoxin-disulfide reductase CLK_0700 1438219 - 1438539 + | thioredoxin family protein grdA 1438624 - 1438755 + | glycine reductase complex component A, selenocysteine-containing TERM 2093 1438880 - 1438864 - g 71 -8 -3.40299 | overlap 1438865 GCAGCAGAGGGAGAA GCAGCA GGTCT TGCTGC TGAGACAGTTACTAA CLK_0702 1438777 - 1439100 + | glycine/sarcosine/betaine reductase complex component A1 (selenoprotein PA 1) (thioredoxinreductase complex A 1) TERM 2094 1439176 - 1439135 - f 100 -12.5 -4.64157 | opp_overlap 1439135, overlap 1439139 1439167 TAAAGAATTATAAAA TTAAGGAGGCTGTACTATA GGTT TATAATTCAGCCTCCTAAA TATTAGGGGGGAATA TERM 2095 1439135 - 1439176 + F 85 -10.3 -3.01924 | opp_overlap 1439135 1439139 1439167 TAAAGAATTATAAAA TTAAGGAGGCTGTACTATA GGTT TATAATTCAGCCTCCTAAA TATTAGGGGGGAATA TERM 2096 1439172 - 1439139 - f 100 -13.3 -3.78909 | opp_overlap 1439135, overlap 1439135 1439167 GAATTATAAAATTAA GGAGGCTGTACTATA GGTT TATAATTCAGCCTCC TAAATATTAGGGGGG TERM 2097 1439999 - 1440009 + G 71 -6.8 -3.93288 | opp_overlap 1439999 ACACACTCTTTAATA GCTG CTT CAGC TTTAGTTCAATCAGG grdC 1439195 - 1440733 + | glycine reductase complex component C, beta subunit grdD 1440749 - 1441915 + | glycine reductase complex component C, alpha subunit TERM 2098 1441981 - 1442012 + F 100 -13.8 -3.62522 | opp_overlap 1441974 TAAACAGAGTTCTTA GCTTTAGAGGGGGT TTTT ACTCCCACTAAAGC TTATTAACAGACTTC TERM 2099 1442015 - 1442058 + F 77 -7.6 -4.08216 | gap 1, opp_overlap 1441974 1442020 1442022, overlap 1442017 1442021 1442022 1442024 CTCCCACTAAAGCTT ATTAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTATC TTTTAGGGGAAATCG TERM 2100 1442017 - 1442056 + F 100 -14.6 -3.63922 | gap 1, opp_overlap 1441974 1442020 1442022, overlap 1442015 1442021 1442022 1442024 CCCACTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCTTTTAGGGGAAAT TERM 2101 1442053 - 1442020 - f 93 -11.9 -3.20747 | gap 1, opp_overlap 1442017 1442015 1442021 1442022 1442024, overlap 1442022 ACTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCTTTTAGGGGA TERM 2102 1442021 - 1442053 + F 100 -12.1 -3.95435 | opp_overlap 1442020 1442022, overlap 1442017 1442015 1442022 1442024 CTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCTTTTAGGGGA TERM 2103 1442052 - 1442022 - f 100 -15.6 -3.16288 | opp_overlap 1442022 1442021 1442017 1442015 1442024, overlap 1442020 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCTTTTAGGGG TERM 2104 1442022 - 1442052 + F 100 -15.6 -2.96779 | opp_overlap 1442020 1442022, overlap 1442021 1442017 1442015 1442024 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCTTTTAGGGG CLK_0705 1442440 - 1443051 + | DNA-3-methyladenine glycosylase TERM 2105 1443868 - 1443850 - g 72 -4 -5.06816 | AGTTTGCAAGAAAAA TATAAACA AAA TATTTATA CTATTAGAAAAAAAG TERM 2106 1444860 - 1444845 - g 74 -3.4 -5.4387 | opp_overlap 1444845 ATATAAAGGAAAAAA TATAAA AAAA TTTATA TGCTATTCCTATTTT CLK_0706 1443118 - 1445361 + | restriction endonuclease family protein TERM 2107 1445467 - 1445422 - f 87 -6.5 -5.4387 | opp_overlap 1445424, overlap 1445423 1445424 ATATAAATTAAAAAA CGTTAATTTTGAACAAATTAA TATG TTATTTTGTTCAAAATTAATT TTTTGTCTAATAATA TERM 2108 1445466 - 1445423 - f 93 -10 -3.83882 | opp_overlap 1445424, overlap 1445422 1445424 TATAAATTAAAAAAC GTTAATTTTGAACAAATTAA TATG TTATTTTGTTCAAAATTAAT TTTTTGTCTAATAAT TERM 2109 1445465 - 1445424 - f 93 -13.5 -2.88702 | opp_overlap 1445424, overlap 1445423 1445422 ATAAATTAAAAAACG TTAATTTTGAACAAATTAA TATG TTATTTTGTTCAAAATTAA TTTTTTGTCTAATAA TERM 2110 1445424 - 1445465 + F 100 -13.5 -5.39721 | opp_overlap 1445424 1445423 1445422 ATAAATTAAAAAACG TTAATTTTGAACAAATTAA TATG TTATTTTGTTCAAAATTAA TTTTTTGTCTAATAA TERM 2111 1446472 - 1446457 - g 74 -7.6 -3.80014 | ATATTTATGACTAAA GCAGAA GGAC TTCTGC ATGGTGATTTGCATA mtnK 1445791 - 1447002 + | 5-methylthioribose kinase mtnA 1447142 - 1448191 + | S-methyl-5-thioribose-1-phosphate isomerase CLK_0709 1448215 - 1449705 + | ribose import ATP-binding protein RbsA CLK_0710 1449707 - 1450702 + | ribose transport system permease protein RbsC TERM 2112 1451296 - 1451282 - g 74 -6.4 -4.40237 | opp_overlap 1451282 CATTAGATAGTAAAA GAGCCT CAG AAGCTC TTTGTAAATACACTG CLK_0711 1450717 - 1451823 + | hypothetical protein TERM 2113 1451868 - 1451854 - g 76 -3.6 -5.42862 | ATATTGTGAAAAAAA CTAAAA AAA TTCTAG CTGTTTTACTTTCTA TERM 2114 1451959 - 1451948 - g 70 -4.4 -4.9792 | TAGTGTAGACAAAAA GGAT AAAG ATCC TAAAGAGGTTACAGT TERM 2115 1452586 - 1452576 - g 74 -5.4 -4.93296 | opp_overlap 1452576 GTAGGAGCAGAAAAA GCTA TAA TAGC TTCTAATAGAATGAA CLK_0712 1451844 - 1452854 + | D-ribose-binding protein TERM 2116 1452886 - 1452852 - f 100 -20.4 -4.72863 | opp_overlap 1452855 1452859 GGAAATAAAGTAAAA TAATAAATTGGGGGAT TTT ATCCCCCAATTTATTA ATCACTTAGTAAAGA TERM 2117 1452855 - 1452883 + F 100 -17.7 -3.22884 | opp_overlap 1452852, overlap 1452859 AATAAAGTAAAATAA TAAATTGGGGGAT TTT ATCCCCCAATTTA TTAATCACTTAGTAA TERM 2118 1452859 - 1452879 + F 100 -14.1 -4.26871 | opp_overlap 1452852, overlap 1452855 AAGTAAAATAATAAA TTGGGGGAT TTT ATCCCCCAA TTTATTAATCACTTA CLK_0713 1452912 - 1453559 + | aldolase TERM 2119 1453723 - 1453713 - f 70 -2.6 -5.56263 | ATTATAAAATAAAAA TATT AGG AATA GGTGGGAAATATGAA CLK_0714 1453734 - 1454528 + | DeoR family transcriptional regulator TERM 2120 1454679 - 1454737 + F 85 -10.9 -2.92938 | gap 1, opp_overlap 1454680 1454688 1454691, overlap 1454691 GATTAATTATCTAAG AGTAAGAAAGAATAATACTAAGTTCTAA ATTT TTAGA-CTTAGTATTATTTTTTATTACA ATTTAAATTCTTTAA TERM 2121 1454736 - 1454680 - f 93 -12.2 -3.12862 | gap 1, opp_overlap 1454679 1454691, overlap 1454688 1454691 ATTAATTATCTAAGA GTAAGAAAGAATAATACTAAGTTCTAA ATTT TTAGA-CTTAGTATTATTTTTTATTAC AATTTAAATTCTTTA TERM 2122 1454728 - 1454688 - f 78 -8 -4.33153 | gap 1, opp_overlap 1454679 1454691, overlap 1454680 1454691 TCTAAGAGTAAGAAA GAATAATACTAAGTTCTAA ATTT TTAGA-CTTAGTATTATTT TTTATTACAATTTAA TERM 2123 1454691 - 1454725 + F 100 -9.7 -5.4756 | gap 1, opp_overlap 1454688 1454680 1454691, overlap 1454679 AAGAGTAAGAAAGAA TAATACTAAGTTCTAA ATTT TTAGA-CTTAGTATTA TTTTTTATTACAATT TERM 2124 1454725 - 1454691 - f 89 -9.7 -4.26924 | gap 1, opp_overlap 1454691 1454679, overlap 1454688 1454680 AAGAGTAAGAAAGAA TAATACTAAGTTCTAA ATTT TTAGA-CTTAGTATTA TTTTTTATTACAATT CLK_0715 1454837 - 1455196 + | hypothetical protein TERM 2125 1455289 - 1455279 - T 73 -5.4 -4.74611 | opp_overlap 1455280, overlap 1455280 TAGTATAAAAAAGAA GCTT CTT AAGC CAATTTATTTCGCTA TERM 2126 1455370 - 1455408 + T 100 -11.8 -4.70659 | overlap 1455371 TTATCTTCCAGATCC ATGACCAGTCACCTAATG TTT TGTGAGGTGACTGGTCAA TTTTTAAATATGCCA TERM 2127 1455371 - 1455407 + T 100 -15.3 -3.41913 | overlap 1455370 TATCTTCCAGATCCA TGACCAGTCACCTAATG TTT TGTGAGGTGACTGGTCA ATTTTTAAATATGCC CLK_0716 1456425 - 1455550 - | cation efflux family protein CLK_0717 1456673 - 1457401 + | hypothetical protein CLK_0718 1457564 - 1457929 + | hypothetical protein TERM 2128 1458243 - 1458258 + G 79 -5.4 -5.28983 | TAGCTACAGCTTTAG GGGGAA CATT TTCCTC TTTTTCTATTTTGGA CLK_0719 1458071 - 1458409 + | hypothetical protein CLK_0720 1458406 - 1458879 + | hypothetical protein TERM 2129 1459149 - 1459139 - f 70 -2.6 -5.52807 | AACAACAAACAAAAA TATT ATA AATA TAGGGTTAGGATGCG CLK_0721 1459569 - 1459955 + | hypothetical protein CLK_0722 1460003 - 1460710 + | hypothetical protein CLK_0723 1460951 - 1460781 - | hypothetical protein TERM 2130 1461204 - 1461167 - R 78 -6.7 -4.82518 | AAAAGAGTAATAAAA TTTTAATATATTAAAAA ATAA TTATTAATATACTAAAA TAAAGATCTATTAAA TERM 2131 1461227 - 1461264 + r 71 -5.8 -4.63107 | opp_overlap 1461227, overlap 1461222 CTATTAAATTAAAAA GCTATGAATTTAGA TTACTATATT TCTAAATCCATAGC TTTTACTTATTTAAT TERM 2132 1461264 - 1461227 - R 90 -8 -5.01811 | opp_overlap 1461227 1461222 CTATTAAATTAAAAA GCTATGAATTTAGA TTACTATATT TCTAAATCCATAGC TTTTACTTATTTAAT CLK_0724 1461548 - 1461312 - | hypothetical protein TERM 2133 1461414 - 1461426 + g 70 -5.5 -4.33755 | GGTAGCTGTTGATGT TGCCT CAG GGGCA TTTGTTGATGTTGCT TERM 2134 1462125 - 1462095 - H 71 -7 -3.9749 | opp_overlap 1462095 ATCTATAATATTAAA GGTTAAGAGATTTA TAA TAAGTCTTTTAACC TTTTTTAGTCTCAAT TERM 2135 1462095 - 1462125 + H 100 -11.4 -5.22312 | opp_overlap 1462095 ATCTATAATATTAAA GGTTAAGAGATTTA TAA TAAGTCTTTTAACC TTTTTTAGTCTCAAT TERM 2136 1462355 - 1462393 + H 76 -9.2 -2.86232 | opp_overlap 1462360 1462366 1462367 1462371 1462375, overlap 1462354 1462353 1462367 TATATAGTTATTTTA ATTTATCAAAATGATATA TAT TTTATCATTTTGATAAAA ATATTCTTTTATATA TERM 2137 1462388 - 1462360 - H 72 -9.1 -2.53995 | opp_overlap 1462355 1462354 1462353 1462367, overlap 1462366 1462367 1462371 1462375 AGTTATTTTAATTTA TCAAAATGATATA TAT TTTATCATTTTGA TAAAAATATTCTTTT TERM 2138 1462731 - 1462695 - H 77 -7.7 -4.07885 | opp_overlap 1462695 1462697 1462703 1462704, overlap 1462703 GACTTGTTTTTAAAA TTTTAAAACTAAAATTT TTT AGATTTTAATTTTAAAA ATAAGGGTGCTATGA CLK_0725 1462743 - 1463039 + | hypothetical protein CLK_0726 1463067 - 1463363 + | hypothetical protein CLK_0727 1463420 - 1465717 + | xanthine dehydrogenase family protein, molybdopterin-binding subunit CLK_0728 1465731 - 1466615 + | xanthine dehydrogenase family protein, FAD-binding subunit CLK_0729 1466647 - 1467120 + | xanthine dehydrogenase family protein, iron-sulfur binding subunit CLK_0730 1467236 - 1467709 + | guanine deaminase TERM 2139 1467765 - 1467732 - f 93 -8.9 -4.77775 | opp_overlap 1467732 1467733, overlap 1467733 AGGTTATAAAATAAA CCCAGTAGCAAGCAT TAAG AAGCTTTCTACTGGA TTTTGTTTTAGTCTT TERM 2140 1467732 - 1467765 + F 83 -6.7 -5.17488 | opp_overlap 1467732 1467733, overlap 1467733 AGGTTATAAAATAAA CCCAGTAGCAAGCAT TAAG AAGCTTTCTACTGGA TTTTGTTTTAGTCTT TERM 2141 1467733 - 1467764 + F 90 -10.2 -3.68052 | opp_overlap 1467732 1467733, overlap 1467732 GGTTATAAAATAAAC CCAGTAGCAAGCAT TAAG AAGCTTTCTACTGG ATTTTGTTTTAGTCT TERM 2142 1467764 - 1467733 - f 87 -10.2 -3.45581 | opp_overlap 1467733 1467732, overlap 1467732 GGTTATAAAATAAAC CCAGTAGCAAGCAT TAAG AAGCTTTCTACTGG ATTTTGTTTTAGTCT TERM 2143 1468028 - 1468054 + F 72 -3.9 -5.4505 | gap 1, overlap 1468049 TATATATATGTAATG TAAGGGTAG-TA AGTA TATCTATCCTTA TTTTTTATTAAAAAA TERM 2144 1468141 - 1468131 - g 74 -5.4 -4.91109 | GTTTTAGCAGAAAAA CCTA GTG TAGG AAGAGATTTGGCTAA topB 1468101 - 1470296 + | DNA topoisomerase III TERM 2145 1471369 - 1471350 - g 80 -2.2 -5.80003 | opp_overlap 1471355, overlap 1471355 TTAATAAAGAAAAAA GAATGTTT TATG AAAAATTC TCTGAAACTTATGTA CLK_0732 1470335 - 1471402 + | permease TERM 2146 1471627 - 1471594 - f 73 -9.1 -2.93073 | gap 1, opp_overlap 1471594, overlap 1471591 1471596 TGTCTTGAATAATGA GACT-CATGTATAGTT TTT AACTATGCATGGAGTC TTTTTTATTGTATAA TERM 2147 1471594 - 1471627 + F 100 -11.3 -5.60689 | gap 1, opp_overlap 1471594 1471591 1471596 TGTCTTGAATAATGA GACT-CATGTATAGTT TTT AACTATGCATGGAGTC TTTTTTATTGTATAA CLK_0733 1471681 - 1472286 + | hypothetical protein CLK_0734 1472350 - 1472586 + | hypothetical protein TERM 2148 1472766 - 1472790 + F 93 -12.9 -3.10164 | overlap 1472773 ATTAAAATTTTTTTA TCCAGTAGAGG CAA CCTCTTCTGGA TTCACTACTGGCTCC TERM 2149 1473535 - 1473514 - g 72 -4.5 -4.89393 | TAAATTGCATAAAAA CATAGTTAT AAAA ATACCTATG TGCGAAGAAGGACTA CLK_0735 1473278 - 1473931 + | transaldolase TERM 2150 1474095 - 1474056 - f 76 -8.3 -3.67611 | opp_overlap 1474056 1474057 1474060, overlap 1474057 1474060 TGTAGTTTAACACAA TTAATCTTTAATAATAT GTAAAA ATATTATTAAAGATTAT TATAATAGATGTAGA TERM 2151 1474094 - 1474057 - f 88 -11.8 -2.80245 | opp_overlap 1474056 1474057 1474060, overlap 1474056 1474060 GTAGTTTAACACAAT TAATCTTTAATAATAT GTAAAA ATATTATTAAAGATTA TTATAATAGATGTAG TERM 2152 1474057 - 1474094 + F 95 -11.8 -3.43492 | opp_overlap 1474057 1474056 1474060, overlap 1474056 1474060 GTAGTTTAACACAAT TAATCTTTAATAATAT GTAAAA ATATTATTAAAGATTA TTATAATAGATGTAG TERM 2153 1474091 - 1474060 - f 79 -9.1 -3.54382 | opp_overlap 1474056 1474057 1474060, overlap 1474057 1474056 GTTTAACACAATTAA TCTTTAATAATAT GTAAAA ATATTATTAAAGA TTATTATAATAGATG TERM 2154 1474060 - 1474091 + F 81 -9.1 -3.8512 | opp_overlap 1474060 1474057 1474056, overlap 1474056 1474057 GTTTAACACAATTAA TCTTTAATAATAT GTAAAA ATATTATTAAAGA TTATTATAATAGATG CLK_0736 1474328 - 1475992 + | RNA-metabolising metallo-beta-lactamase TERM 2155 1476014 - 1476046 + F 100 -10.8 -5.80248 | opp_overlap 1476014 AAAAAATAATAAAAA GCTAGAACTTTAAT GTGAA ATTATAGTTCTAGC TTTTTTTATATATTA TERM 2156 1476046 - 1476014 - f 100 -10.8 -5.54403 | opp_overlap 1476014 AAAAAATAATAAAAA GCTAGAACTTTAAT GTGAA ATTATAGTTCTAGC TTTTTTTATATATTA CLK_0737 1476296 - 1477648 + | sodium:alanine symporter family protein TERM 2157 1477749 - 1477799 + F 70 -4.3 -4.96848 | gap 1, opp_overlap 1477754, overlap 1477755 TATTATATATTAAGC ATAGAGGGATGTGTCACTAACATA AGAT TGTGTTAGTAACATAT-CCTTTAC TTTTTATATAGGCAA TERM 2158 1477755 - 1477794 + F 100 -12.4 -4.40526 | opp_overlap 1477754, overlap 1477749 ATATTAAGCATAGAG GGATGTGTCACTAACATA AGAT TGTGTTAGTAACATATCC TTTACTTTTTATATA CLK_0738 1477970 - 1478815 + | GGDEF domain-containing protein TERM 2159 1480130 - 1480142 + G 71 -2 -5.39221 | TATGGTAAGGGGATA TACT GCCGG AGTA TTTTTTCATTCTTAT TERM 2160 1480193 - 1480222 + G 83 -10.3 -3.53012 | opp_overlap 1480202, overlap 1480202 AGAATTAGTTGATTA TCTAAAAAGTCAA AATG TTGATTTTTTAGA TTTGAAAAAAGAGGA TERM 2161 1480202 - 1480213 + G 71 -3 -5.22039 | opp_overlap 1480202, overlap 1480193 TGATTATCTAAAAAG TCAA AATG TTGA TTTTTTAGATTTGAA CLK_0739 1478808 - 1480460 + | STE-like transcription factor domain-containing protein CLK_0740 1480466 - 1481728 + | glycosyl transferase, group 2 family protein TERM 2162 1482128 - 1482114 - g 71 -5.8 -4.41348 | GCGGCTTCAAATAAA TCTAAA AAT TTTAGA GTAGAAAAAGATATG TERM 2163 1483065 - 1483045 - g 78 -9.9 -3.1875 | GATATGGCAATGTAA GTTTAAAAG GAC CTTTTAAAC AGGAGGCAACCTTTA CLK_0741 1482021 - 1484117 + | cellulose synthase domain-containing protein TERM 2164 1484171 - 1484201 + F 100 -17 -3.62522 | opp_overlap 1484164 TAAACAGAGTTCTTG GCTTTAGAGGGAGT TTT ACTCCCACTAAAGC TTATTAACAGAATTC TERM 2165 1485372 - 1485344 - g 72 -6.2 -4.30704 | opp_overlap 1485341, overlap 1485341 AACATAAAAGAAGAA TTATGTCATTTT AATGA AAAATGGCATAA ACCTGTTTTCTTTGG TERM 2166 1485578 - 1485551 - g 85 -11.6 -2.62263 | opp_overlap 1485553 1485556, overlap 1485553 1485556 ATTTTTGCTATAGGA GATAATAGTTTT GATA AAAACTATTATC CTTCAGAAGAAACTA CLK_0742 1484531 - 1485625 + | hypothetical protein CLK_0743 1485853 - 1486017 + | hypothetical protein TERM 2167 1486058 - 1486035 - f 100 -14 -3.91798 | opp_overlap 1486035 GAATTCGTAATTAAA CCTGTAAGAG GTTA CTCTTACAGG TTTTTTGTGTTTCAG TERM 2168 1486035 - 1486058 + F 100 -14 -5.56264 | opp_overlap 1486035 GAATTCGTAATTAAA CCTGTAAGAG GTTA CTCTTACAGG TTTTTTGTGTTTCAG TERM 2169 1486263 - 1486243 - f 75 -8.5 -3.48105 | overlap 1486236 1486241 TGAATTTATTAAATA TCTATTTAA AAA TTAAATAGA ACTAATTACTTTATT TERM 2170 1486830 - 1486849 + G 73 -5.8 -4.65446 | TACCTAAAAAGCTAG TGTTATTG AATA CAATAGCA TTTTCTATATCTACT CLK_0744 1486352 - 1487155 + | hypothetical protein TERM 2171 1487159 - 1487196 + F 100 -15.3 -5.74086 | opp_overlap 1487159 AAAATAATTTAAAAA TGTGTATCAAAATAGAT TTAA ATTTATTTTGATACACA TTTTTTATTTAATTT TERM 2172 1487196 - 1487159 - f 100 -13.1 -4.85195 | opp_overlap 1487159 AAAATAATTTAAAAA TGTGTATCAAAATAGAT TTAA ATTTATTTTGATACACA TTTTTTATTTAATTT TERM 2173 1487258 - 1487278 + F 87 -11.1 -3.06796 | opp_overlap 1487257 1487255 1487259, overlap 1487261 TGCTTTAATTAAGAT ACACCCCCA GGG TGGGGGTGG TTAAATAAGGTGAAC TERM 2174 1487277 - 1487259 - f 100 -14.6 -3.18366 | opp_overlap 1487258 1487261, overlap 1487257 1487255 GCTTTAATTAAGATA CACCCCCA GGG TGGGGGTG GTTAAATAAGGTGAA TERM 2175 1487261 - 1487275 + F 83 -11.4 -2.75382 | opp_overlap 1487259 1487257 1487255, overlap 1487258 TTTAATTAAGATACA CCCCCA GGG TGGGGG TGGTTAAATAAGGTG CLK_0745 1487372 - 1487638 + | hypothetical protein TERM 2176 1489745 - 1489733 - g 74 -3.4 -5.41746 | AACTGGGTAAAAAAA CTTC AACAA GAAG GAAAAATTGTAGCTA CLK_0746 1487675 - 1490110 + | copper-translocating P-type ATPase copZ 1490233 - 1490451 + | copper chaperone CopZ TERM 2177 1490479 - 1490512 + F 100 -14.8 -4.49353 | opp_overlap 1490479 TTTATGAGTTTAAAA GGGAGTCTCAAAAT AGATTA ATTTTGAGGCTCCC TTTCTTATATTGTGC TERM 2178 1490512 - 1490479 - f 100 -12.6 -4.15565 | opp_overlap 1490479 TTTATGAGTTTAAAA GGGAGTCTCAAAAT AGATTA ATTTTGAGGCTCCC TTTCTTATATTGTGC TERM 2179 1492656 - 1492666 + G 79 -5.4 -5.29782 | opp_overlap 1492650 GGTCATTAAGTATAG GGAT ACC ATCC TTTTTTCTAGCTATA CLK_0748 1490738 - 1493119 + | cation-transporting ATPase, P-type TERM 2180 1493175 - 1493213 + F 100 -9.1 -5.28983 | opp_overlap 1493169 1493163 1493177, overlap 1493177 TAATATACATTAAGA AAGGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCCTC TTTTTATATTTTAAG TERM 2181 1493177 - 1493211 + F 100 -11.7 -4.25747 | opp_overlap 1493169 1493163 1493177, overlap 1493175 ATATACATTAAGAAA GGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCC TCTTTTTATATTTTA TERM 2182 1493211 - 1493177 - f 75 -7.3 -4.31895 | opp_overlap 1493175 1493177, overlap 1493169 1493163 ATATACATTAAGAAA GGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCC TCTTTTTATATTTTA TERM 2183 1493903 - 1493922 + G 81 -7.2 -4.52857 | overlap 1493904 TAATAAGTTTTATAT TCATACCA ATTC TGGTATGG TTTTCTATGAAAAAT TERM 2184 1493904 - 1493921 + G 72 -8.5 -3.31232 | overlap 1493903 AATAAGTTTTATATT CATACCA ATTC TGGTATG GTTTTCTATGAAAAA CLK_0749 1493416 - 1495134 + | ABC transporter, ATP-binding protein/permease protein TERM 2185 1495210 - 1495249 + F 100 -10.5 -5.05782 | opp_overlap 1495215 1495216 1495219, overlap 1495216 1495246 AATGACATAGATGTA TAAAAGTAACAATAAAA CTCTAA TTTTATTGTTATTTTTA TTTTTTGAAATAGAT TERM 2186 1495216 - 1495243 + F 93 -7.3 -5.75538 | opp_overlap 1495216 1495215 1495219, overlap 1495210 ATAGATGTATAAAAG TAACAATAAAA CTCTAA TTTTATTGTTA TTTTTATTTTTTGAA TERM 2187 1495316 - 1495273 - f 100 -13.6 -4.34947 | opp_overlap 1495284, overlap 1495275 AATAGATTATTAAAA CAGTATACAAATTATGTTAT ATAT ATAACATAATTTGTATACAA TTAACAACTAAAATG TERM 2188 1495314 - 1495275 - f 100 -18.4 -3.76811 | opp_overlap 1495284, overlap 1495273 TAGATTATTAAAACA GTATACAAATTATGTTAT ATAT ATAACATAATTTGTATAC AATTAACAACTAAAA TERM 2189 1495284 - 1495305 + F 77 -7.5 -4.06491 | opp_overlap 1495275 1495273 AAAACAGTATACAAA TTATGTTAT ATAT ATAACATAA TTTGTATACAATTAA CLK_0750 1495427 - 1496221 + | CAAX amino terminal protease family protein CLK_0751 1496385 - 1496741 + | dinitrogenase iron-molybdenum cofactor family protein TERM 2190 1497797 - 1497781 - g 79 -8.1 -3.89505 | AAAAATCCAGAAGAA GAAATAG TAG CTATTTC TCATGGAGATTCAGA CLK_0752 1497085 - 1497978 + | DegV family protein TERM 2191 1498017 - 1497976 - T 100 -17.1 -3.10297 | gap 1, opp_overlap 1497976 1497984, overlap 1497979 1497984 ATTATAGATATAAAT TAATAAAATAAGGAAAGTGC TAT GCACTTTCCTTATTTT-TTA TCTTTGGCCTTTACC TERM 2192 1497976 - 1498017 + T 100 -17.1 -3.43919 | gap 1, opp_overlap 1497976 1497979 1497984, overlap 1497984 ATTATAGATATAAAT TAATAAAATAAGGAAAGTGC TAT GCACTTTCCTTATTTT-TTA TCTTTGGCCTTTACC TERM 2193 1498015 - 1497979 - T 100 -16.9 -3.68084 | opp_overlap 1497976 1497984, overlap 1497976 1497984 ATAGATATAAATTAA TAAAATAAGGAAAGTGC TAT GCACTTTCCTTATTTTT TATCTTTGGCCTTTA TERM 2194 1498010 - 1497984 - T 100 -16.8 -4.87052 | opp_overlap 1497984 1497976, overlap 1497979 1497976 TATAAATTAATAAAA TAAGGAAAGTGC TAT GCACTTTCCTTA TTTTTTATCTTTGGC TERM 2195 1497984 - 1498010 + T 100 -16.8 -5.56264 | opp_overlap 1497979 1497976 1497984, overlap 1497976 TATAAATTAATAAAA TAAGGAAAGTGC TAT GCACTTTCCTTA TTTTTTATCTTTGGC CLK_0753 1498479 - 1498015 - | 5-nitroimidazole antibiotic resistance protein CLK_0754 1498694 - 1498906 + | hypothetical protein CLK_0755 1498948 - 1499376 + | HIT family protein TERM 2196 1499480 - 1499521 + T 100 -11.9 -4.98672 | opp_overlap 1499486, overlap 1499486 GTATATTTTAAGTTT TAAAAAGACCTATTTAGTT ATTT AACTAAATAGGTCTTTAAA TTTTATATTTTTACA TERM 2197 1499486 - 1499515 + T 100 -15.3 -3.99216 | opp_overlap 1499486, overlap 1499480 TTTAAGTTTTAAAAA GACCTATTTAGTT ATTT AACTAAATAGGTC TTTAAATTTTATATT TERM 2198 1499515 - 1499486 - T 100 -15.3 -4.62471 | opp_overlap 1499486 1499480 TTTAAGTTTTAAAAA GACCTATTTAGTT ATTT AACTAAATAGGTC TTTAAATTTTATATT CLK_0756 1499906 - 1499532 - | hypothetical protein TERM 2199 1499691 - 1499667 - G 82 -8 -4.38927 | overlap 1499689 GGCTGATATAACAAA TCCTTTTAGT CCTCT ACCAAAAGGA GAAGCATCTACTCCC TERM 2200 1499705 - 1499689 - G 72 -6.5 -4.25283 | overlap 1499667 AGTCCTCTACCAAAA GGAGAAG CAT CTACTCC CATAAATTTTTCTAC TERM 2201 1499993 - 1499956 - H 72 -8.9 -2.62735 | opp_overlap 1499952 1499951 1499949, overlap 1499966 1499982 ATATTTTGTACATTA TTTTAAAAAATATTATA AATA TCTAATATTTTTTAAAA TAAAATGTTTAAAAT TERM 2202 1500410 - 1500398 - g 77 -4.9 -5.27023 | opp_overlap 1500398 ATTGTAAAAATAAAA TATCT TTA AGATA TCCTCTAGTAGAATT CLK_0757 1500196 - 1500942 + | type IV leader peptidase family protein TERM 2203 1501279 - 1501321 + F 88 -6.5 -5.48213 | opp_overlap 1501277 ATTAAATTTAAAATA TACCTTATAGAGTAGGT AATAAAAAA GTCTACTCTATGGGGTA TTTTTATTTTAAATA CLK_0758 1501557 - 1502684 + | hypothetical protein TERM 2204 1502866 - 1502896 + F 71 -8.3 -3.1136 | gap 1, opp_overlap 1502882, overlap 1502862 AAATGTATTTTTTAT GGGGCAG-CCTCAA GTAT TAGAGGACTGTCCC TAATTTATTACCGTT trkA 1503472 - 1504839 + | Trk system potassium uptake protein TrkA trkH 1504836 - 1506281 + | Trk system potassium uptake protein TrkH CLK_0761 1506674 - 1506546 - | hypothetical protein CLK_0762 1507177 - 1507064 - | sodium dependent amino acid transporter TERM 2205 1507367 - 1507343 - H 82 -8.7 -4.01939 | GAAGTTATAAGGAAA GTCACATAG TACTTAT CTATGTGAC TCAGAATTAACTATA CLK_0763 1507653 - 1510220 + | helicase, UvrD/REP/exonuclease family protein TERM 2206 1510642 - 1510687 + F 81 -7.3 -4.86001 | gap 1, opp_overlap 1510642 TATATATAAATTAAA GACACATTAAG-AAAAATAT GATTAAA ATATTTCTACTTAATGTGTC TTTTTATAGAATAAT TERM 2207 1510687 - 1510642 - f 89 -9.5 -4.19648 | gap 1, opp_overlap 1510642 TATATATAAATTAAA GACACATTAAG-AAAAATAT GATTAAA ATATTTCTACTTAATGTGTC TTTTTATAGAATAAT TERM 2208 1510721 - 1510731 + F 75 -6.8 -4.41633 | AAAGGACATTATATT CCTC TAT GAGG TTATTTTTACACATG CLK_0764 1511508 - 1512650 + | hypothetical protein CLK_0765 1514223 - 1513093 - | hypothetical protein CLK_0766 1514612 - 1514238 - | GntR family transcriptional regulator TERM 2209 1514672 - 1514619 - R 77 -8 -4.03167 | gap 1, opp_overlap 1514628 1514630 1514637 1514641 1514643, overlap 1514637 1514641 1514643 1514656 TAATATCAATAATAA TCACCTCATGTTATATAATATATAT CTGTT ATATATATTATATAACA-GATGTTA TAAAAATAAAATATT TERM 2210 1514641 - 1514669 + r 93 -11.3 -3.31263 | opp_overlap 1514619 1514637 1514641 1514643 1514656, overlap 1514630 1514628 1514637 1514643 ATGTTATATAATATA TATCTGTTATATA TAT TATATAACAGATG TTATAAAAATAAAAT TERM 2211 1514669 - 1514641 - R 75 -9.1 -3.22886 | opp_overlap 1514630 1514628 1514637 1514641 1514643, overlap 1514619 1514637 1514643 1514656 ATGTTATATAATATA TATCTGTTATATA TAT TATATAACAGATG TTATAAAAATAAAAT TERM 2212 1514643 - 1514667 + r 93 -11.7 -3.22475 | opp_overlap 1514643 1514641 1514619 1514637 1514656, overlap 1514628 1514637 1514641 GTTATATAATATATA TCTGTTATATA TAT TATATAACAGA TGTTATAAAAATAAA TERM 2213 1514667 - 1514643 - R 93 -11.7 -3.17443 | opp_overlap 1514628 1514637 1514641 1514643, overlap 1514641 1514619 1514637 1514656 GTTATATAATATATA TCTGTTATATA TAT TATATAACAGA TGTTATAAAAATAAA TERM 2214 1514739 - 1514795 + r 93 -7.8 -5.27206 | gap 1, opp_overlap 1514752, overlap 1514741 1514743 TTATTATTTATTTAG TGTA-GCTTAGATATACGTAAAAAATA TTAA TGTTTCTTACATATATCTAAGCTTATA TTTTTATTATATATA TERM 2215 1514741 - 1514793 + r 80 -8.2 -4.24787 | gap 1, opp_overlap 1514752, overlap 1514739 1514743 ATTATTTATTTAGTG TA-GCTTAGATATACGTAAAAAATA TTAA TGTTTCTTACATATATCTAAGCTTA TATTTTTATTATATA TERM 2216 1514743 - 1514790 + r 100 -12.4 -4.20092 | opp_overlap 1514752, overlap 1514741 1514739 TATTTATTTAGTGTA GCTTAGATATACGTAAAAAATA TTAA TGTTTCTTACATATATCTAAGC TTATATTTTTATTAT CLK_0767 1515900 - 1515121 - | putative cell wall hydrolase TERM 2217 1515242 - 1515255 + g 80 -2.3 -5.66989 | TCAGATCCATATAAA GCTTC TTTA GCAGC TTTTTTTGATGTTTC rbr 1516682 - 1517269 + | rubrerythrin TERM 2218 1517357 - 1517393 + F 70 -4.5 -5.09259 | opp_overlap 1517357, overlap 1517352 TATTAAATACAAAAA GCTATGAAAGAGAGG GATAACA CCTTAATTTCATAGC TTTTATTTTGCAATA TERM 2219 1517575 - 1517524 - f 85 -10.2 -3.28924 | opp_overlap 1517523 1517525 1517528, overlap 1517525 1517527 1517553 TATGTCCCTGGATAA CGATTTCTAAGCTTCAAGGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCT ATTTATGTTCTATAT TERM 2220 1517525 - 1517574 + F 95 -11.5 -3.75093 | opp_overlap 1517524 1517525 1517527 1517553, overlap 1517523 1517528 ATGTCCCTGGATAAC GATTTCTAAGCTTCAAGGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TATTTATGTTCTATA TERM 2221 1517574 - 1517525 - f 100 -13.7 -2.57211 | opp_overlap 1517525 1517523 1517528, overlap 1517524 1517527 1517553 ATGTCCCTGGATAAC GATTTCTAAGCTTCAAGGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TATTTATGTTCTATA TERM 2222 1517572 - 1517527 - f 82 -10.5 -2.82623 | opp_overlap 1517525 1517523 1517528, overlap 1517525 1517524 1517553 GTCCCTGGATAACGA TTTCTAAGCTTCAAGGGGAGT AAAA ACTCCCTCTGAAGCCAAGAAC TCTATTTATGTTCTA TERM 2223 1517528 - 1517571 + F 86 -11.8 -2.65284 | opp_overlap 1517527 1517525 1517524 1517553, overlap 1517525 1517523 TCCCTGGATAACGAT TTCTAAGCTTCAAGGGGAGT AAAA ACTCCCTCTGAAGCCAAGAA CTCTATTTATGTTCT CLK_0769 1517694 - 1519148 + | amidase domain-containing protein TERM 2224 1519268 - 1519304 + T 100 -11.9 -4.15854 | opp_overlap 1519256 1519268 AATTATTTAAAAAAA TAGGCTTAAATCTTA TTTAATT TGAGATTTAAGCCTA TTTTAAAGTAAATTT TERM 2225 1519304 - 1519268 - T 100 -9.7 -5.49729 | opp_overlap 1519268, overlap 1519256 AATTATTTAAAAAAA TAGGCTTAAATCTTA TTTAATT TGAGATTTAAGCCTA TTTTAAAGTAAATTT ptsG 1521358 - 1519328 - | PTS system, glucose-specific, IIABC component TERM 2226 1519788 - 1519804 + g 79 -5.2 -5.2166 | opp_overlap 1519779 1519788, overlap 1519780 AATTTATCTTTAGAA GAAACT TTTAC AGTTTC TTTTTTAGGTTCTTC TERM 2227 1521473 - 1521461 - H 78 -6.3 -4.94672 | opp_overlap 1521460 1521466 AAATAAGATTAAAAA GTGTA GAA TACAC CTATGTAATCTTAAA TERM 2228 1521557 - 1521567 + H 82 -2.6 -6.17268 | opp_overlap 1521564, overlap 1521564 TAAATTCATTTATAC TATA TCA TATA TTTTTTTTATTATCA TERM 2229 1521781 - 1521756 - H 83 -7.8 -4.61231 | opp_overlap 1521758 CTATATGTTTAAAAA TACCATTATT GTACAT AATAATGGTA ATTAAAAAAATAAGA CLK_0771 1521815 - 1522462 + | undecaprenyl pyrophosphate synthetase-like protein TERM 2230 1522557 - 1522501 - f 100 -18.5 -3.10879 | opp_overlap 1522502, overlap 1522504 ATCAATTTTAATATA TTAGTATTACAGCACATAATAGTATAT AAA ATAATCTATTATGTGCTGTAATACTAT TTAAATATTAATTGA TERM 2231 1522502 - 1522556 + F 100 -22 -3.78902 | opp_overlap 1522501 1522504 TCAATTTTAATATAT TAGTATTACAGCACATAATAGTATAT AAA ATAATCTATTATGTGCTGTAATACTA TTTAAATATTAATTG TERM 2232 1522554 - 1522504 - f 100 -20.2 -2.76093 | opp_overlap 1522502, overlap 1522501 AATTTTAATATATTA GTATTACAGCACATAATAGTATAT AAA ATAATCTATTATGTGCTGTAATAC TATTTAAATATTAAT CLK_0772 1522607 - 1522753 + | hypothetical protein CLK_0773 1522850 - 1523368 + | hypothetical protein CLK_0774 1523650 - 1524063 + | putative transcriptional regulator TERM 2233 1524766 - 1524753 - g 89 -6.7 -5.38321 | AAATAGTAGAAAAAA TGGCT TATA AGCCA AGATATGAAAATTGG CLK_0775 1524272 - 1526158 + | carbon monoxide dehydrogenase TERM 2234 1526176 - 1526229 + F 75 -8.7 -3.12505 | gap 1, opp_overlap 1526176 1526195, overlap 1526174 1526195 ATTTTGATAATTACA TTTTTGCATTGATCTGAAAT-TTA AACTAAA TATTATTTCAGATCAATGTAAAAA TATTAACTATAGAAT CLK_0776 1526305 - 1526748 + | nitrate reductase, iron-sulfur subunit TERM 2235 1527029 - 1526999 - g 72 -6.3 -4.21194 | opp_overlap 1527000, overlap 1527000 TTTCAGCAGTTAAAA CTTTGAGAACCTT AGATA AAGATTCTCAAAT AGTTATGATTTCTAA TERM 2236 1527028 - 1527000 - g 78 -9.8 -3.12395 | opp_overlap 1527000, overlap 1526999 TTCAGCAGTTAAAAC TTTGAGAACCTT AGATA AAGATTCTCAAA TAGTTATGATTTCTA noxA 1526947 - 1528173 + | nitrate reductase, NADH oxidase subunit TERM 2237 1528323 - 1528291 - T 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLK_0778 1530025 - 1528847 - | putative transporter CLK_0779 1530889 - 1530203 - | Crp/FNR family transcriptional regulator TERM 2238 1530275 - 1530286 + g 72 -4.4 -5.06414 | TTTTTTATATCCTAA GGAA ATCA TTCC TTTTTCTTGAAAAGA TERM 2239 1530592 - 1530615 + g 74 -9 -3.28119 | gap 1, opp_overlap 1530588 1530587 1530584 CTGAAATTAATTCCA CATCTG-TAGC AGC GCTAACAGATG TTAATCTAGATCCAT CLK_0780 1531006 - 1532205 + | major facilitator superfamily protein TERM 2240 1532221 - 1532248 + F 78 -5.7 -5.26316 | opp_overlap 1532221 AAAGGATGTTATAAA GCTATAGGA TGTTTATTTT TCCTATAGC TTTTTTATAAAGTAA CLK_0781 1532507 - 1533421 + | iron chelate ABC transporter solute-binding protein CLK_0782 1533443 - 1534441 + | iron chelate ABC transporter permease protein CLK_0783 1534444 - 1535205 + | iron chelate ABC transporter ATP-binding protein TERM 2241 1535255 - 1535227 - T 76 -9.7 -2.85947 | opp_overlap 1535225, overlap 1535219 1535224 1535222 TGTAATATAACAGCA TCAGTGACTGT TATAAAG ACAGCCACTGA TAGTAATTAATATTA CLK_0784 1535761 - 1535426 - | hypothetical protein CLK_0785 1537112 - 1535835 - | iron-sulfur cluster-binding protein TERM 2242 1536417 - 1536436 + g 70 -4.4 -4.86001 | gap 1, overlap 1536421 CATATTTAAAATATC TAGA-GCTT CAG AAGCATCTA TTTTTCTAGCATAAT TERM 2243 1538127 - 1538117 - g 91 -5.4 -5.86332 | GGAAGCGAAAAAAAA TGGT GCT ACCA CTATAGCTATAACTA CLK_0786 1537512 - 1538357 + | RpiR family transcriptional regulator TERM 2244 1538406 - 1538429 + F 83 -6.1 -5.34857 | AATTTAGATGGTGAA GCAATGAGT ATAAAA ATTCATTGC TTTTATTTTATTTAA CLK_0787 1538637 - 1539545 + | glucokinase regulator-like protein TERM 2245 1540390 - 1540374 - g 79 -5.2 -5.25906 | opp_overlap 1540374 AGAAAGTAAGAAAAA TAATGC CAGAT GCATTA GATTTATTTATGACT CLK_0788 1539659 - 1541014 + | PTS system, IIBC components CLK_0789 1541436 - 1542521 + | outer surface protein CLK_0790 1542639 - 1543490 + | AraC family transcription regulator TERM 2246 1543734 - 1543685 - g 70 -6.1 -4.11033 | opp_overlap 1543691 AGCAAAGAGTATAAA GAAAAATTATATTTAGTTGTCAA TGAA TTGAGAGATAAATATAATCTTTC TAGCAGCTATACTAA TERM 2247 1543788 - 1543767 - g 80 -2.4 -5.72053 | CAATGAAAGAAAAAA TGAATACT GAGGAA AATATTCA GATATCATTATTTGA CLK_0791 1543514 - 1543813 + | radical SAM-superfamily protein TERM 2248 1543933 - 1543904 - f 88 -6.5 -5.53436 | opp_overlap 1543899 1543904 AGATAATACAAAAAA GCCTCTTAGGA TAAAAAAT TCTTAAGAGGC TTATATTTTATTATT TERM 2249 1543904 - 1543933 + F 82 -8.7 -4.12416 | opp_overlap 1543904, overlap 1543899 AGATAATACAAAAAA GCCTCTTAGGA TAAAAAAT TCTTAAGAGGC TTATATTTTATTATT TERM 2250 1544274 - 1544284 + G 72 -4 -5.06816 | TTAATGGTATAGGAT TAGA ACA TCTA TTTTTATTGAAAGAT CLK_0792 1544204 - 1544809 + | hypothetical protein CLK_0793 1545089 - 1545730 + | hypothetical protein TERM 2251 1546165 - 1546147 - f 72 -8.2 -3.2511 | opp_overlap 1546147, overlap 1546146 TGTTATTTATAAAAG GCATGAAA TCT TCTCATGC TTTGACGTATTAATT TERM 2252 1546274 - 1546257 - g 71 -4.9 -4.80882 | gap 1, opp_overlap 1546255 1546257 ATCTTACATGAAAAA GCTAT-CC ACA GGTATAGC TATATTTTTATGTGC CLK_0794 1546249 - 1548120 + | hypothetical protein CLK_0795 1548173 - 1549411 + | putative cell-surface protein CLK_0796 1549411 - 1549953 + | hypothetical protein TERM 2253 1550086 - 1550044 - T 86 -9.6 -3.87925 | opp_overlap 1550044 1550049, overlap 1550049 AATGATTAAATATAA TAAAACACTATCAAAT ATTTTTACACA ATTTGATAGTGTTTTA TTTATAAGAACTTCT TERM 2254 1550044 - 1550086 + T 86 -9.6 -3.88137 | opp_overlap 1550044 1550049, overlap 1550049 AATGATTAAATATAA TAAAACACTATCAAAT ATTTTTACACA ATTTGATAGTGTTTTA TTTATAAGAACTTCT TERM 2255 1550081 - 1550049 - T 72 -5.1 -4.95302 | opp_overlap 1550044 1550049, overlap 1550044 TTAAATATAATAAAA CACTATCAAAT ATTTTTACACA ATTTGATAGTG TTTTATTTATAAGAA TERM 2256 1550049 - 1550081 + T 72 -5.1 -4.99043 | opp_overlap 1550049 1550044, overlap 1550044 TTAAATATAATAAAA CACTATCAAAT ATTTTTACACA ATTTGATAGTG TTTTATTTATAAGAA CLK_0797 1550396 - 1550124 - | hypothetical protein TERM 2257 1551453 - 1551432 - g 70 -5.9 -4.28254 | GTTTAAGATTCAAAA TGATAAAGC TAAC GCTTTTTCA AATAGATTTATAACA CLK_0798 1550893 - 1552611 + | methyl-accepting chemotaxis protein TERM 2258 1552831 - 1552800 - f 86 -7.5 -4.85599 | opp_overlap 1552800 GTCATCGGATAAAAA TATAGATGGCT TTTTAAGACG AGCCATCTATA TTTTTATTTGGATAA TERM 2259 1552800 - 1552831 + F 100 -9.6 -5.30616 | opp_overlap 1552800 GTCATCGGATAAAAA TATAGATGGCTTTT TAAG ACGAGCCATCTATA TTTTTATTTGGATAA TERM 2260 1552914 - 1552896 - f 81 -9 -3.87576 | opp_overlap 1552890 1552886 TTATAATAATTTAAA TTTTCTCA ATA TGAGAAAA TGTGAATAAATTATC TERM 2261 1553332 - 1553314 - g 70 -5.3 -4.54553 | GATAAAGATAATAAA CCGCAAT GTGAT ATTGCAG AATCTTATAAGAAAT TERM 2262 1553407 - 1553395 - g 72 -6.3 -4.21787 | AAAAAAGGTGTAAAA TTCCA TGA TGGAA AAGAACTCAAAGCGG TERM 2263 1553596 - 1553582 - g 71 -7.2 -3.76837 | TAGACAAGTTAACAA TTGGAA TAG TTCCAA AGCATGCTCTAGAAG CLK_0799 1553071 - 1554660 + | peptide/opine/nickel uptake ABC transporter substrate-binding protein TERM 2264 1554728 - 1554786 + G 100 -15.7 -3.21912 | gap 2, opp_overlap 1554743 1554744, overlap 1554743 1554744 CCTAAGTATAATATC CTTTCTTATCATAAAT-GCTG-CGCCGGG AGA TCCGGCGGTAGCTATTTATGGTGGGAAAG TTGATAGATTAACCA TERM 2265 1554744 - 1554769 + G 83 -9.7 -3.57406 | gap 1, opp_overlap 1554743 1554744, overlap 1554743 1554728 TTTCTTATCATAAAT GCTG-CGCCGGG AGA TCCGGCGGTAGC TATTTATGGTGGGAA CLK_0800 1554657 - 1555613 + | peptide/opine/nickel uptake ABC transporter permease CLK_0801 1555622 - 1556422 + | peptide/opine/nickel uptake ABC transporter permease TERM 2266 1556580 - 1556568 - g 87 -3.5 -5.95946 | TGAAGAAGAAAAAAA TAAAA AAA TTTTA GTTGGGAATACTAAT TERM 2267 1556737 - 1556768 + G 72 -6.8 -4.07568 | opp_overlap 1556736 1556738, overlap 1556738 TTTAACGGGGAAAAT ACTTTTAATTTTTC TAAA GAAAAATTAAGAGA TTTTAGAGGAAAGAA TERM 2268 1556767 - 1556738 - g 74 -8.1 -3.67 | opp_overlap 1556737 1556738, overlap 1556736 TTAACGGGGAAAATA CTTTTAATTTTTC TAAA GAAAAATTAAGAG ATTTTAGAGGAAAGA TERM 2269 1556738 - 1556767 + G 79 -10.3 -3.04398 | opp_overlap 1556738 1556736, overlap 1556737 TTAACGGGGAAAATA CTTTTAATTTTTC TAAA GAAAAATTAAGAG ATTTTAGAGGAAAGA CLK_0802 1556521 - 1557315 + | peptide/opine/nickel uptake ABC transporter ATP-binding protein CLK_0803 1557309 - 1558121 + | peptide/opine/nickel uptake ABC transporter ATP-binding protein TERM 2270 1558321 - 1558364 + F 100 -10.7 -4.38774 | opp_overlap 1558324, overlap 1558324 AAGTAGTCATATTTT AAAGAGTTGAATATAAATT TTAATT GATTTATATTCAACTCTTA TTTTAATATAATGTT TERM 2271 1558324 - 1558361 + F 100 -12.4 -4.29905 | opp_overlap 1558324, overlap 1558321 TAGTCATATTTTAAA GAGTTGAATATAAATT TTAATT GATTTATATTCAACTC TTATTTTAATATAAT TERM 2272 1558361 - 1558324 - f 95 -11.7 -3.64103 | opp_overlap 1558324 1558321 TAGTCATATTTTAAA GAGTTGAATATAAAT TTTAATTG ATTTATATTCAACTC TTATTTTAATATAAT CLK_0804 1558567 - 1559079 + | putative lipoprotein TERM 2273 1559222 - 1559173 - T 100 -20.7 -3.19091 | opp_overlap 1559184, overlap 1559184 ATAGTTATTTATTAA TTTATAAAAAAGTAACACTTATA AAAT TATAAGTGTTACTTTCTTATAAA GGGGATCTTAAAATT TERM 2274 1559211 - 1559184 - T 100 -13 -5.31456 | opp_overlap 1559184, overlap 1559173 TTAATTTATAAAAAA GTAACACTTATA AAAT TATAAGTGTTAC TTTCTTATAAAGGGG TERM 2275 1559184 - 1559211 + T 100 -13 -4.30719 | opp_overlap 1559184 1559173 TTAATTTATAAAAAA GTAACACTTATA AAAT TATAAGTGTTAC TTTCTTATAAAGGGG CLK_0805 1560159 - 1559371 - | manganese/zinc/iron chelate ABC transporter permease TERM 2276 1559656 - 1559646 - G 76 -2.6 -5.63645 | opp_overlap 1559646 CTAAAATAGAAAAAA TATA ATT TATA AGTTTTACTCTTACA CLK_0806 1560812 - 1560159 - | manganese/zinc/iron chelate ABC transporter ATP-binding protein TERM 2277 1560965 - 1560951 - H 73 -7.2 -4.18367 | TATTATACATATAAA TGCAAA TAG TTTGCA ATAACCTATAGAAAA CLK_0807 1561033 - 1561971 + | manganese/zinc/iron chelate ABC transporter substrate-binding protein CLK_0808 1562576 - 1562085 - | hypothetical protein TERM 2278 1562254 - 1562234 - G 75 -5.5 -4.78848 | CGGCTAAAGACAAAA CTCCTAAAA ATA TTTCAAGAG CAGAGGAACCGTAAA CLK_0809 1562990 - 1564756 + | helicase domain-containing protein CLK_0810 1564891 - 1565439 + | GGDEF domain-containing protein TERM 2279 1565443 - 1565482 + F 100 -12.7 -4.15788 | opp_overlap 1565449 1565478, overlap 1565449 AAAATAGGGTAGCAT TTAAAATATTTTGTATA TATTAT TATACAAAATATTTTAA TTTATTAAAGAAATT TERM 2280 1565476 - 1565449 - f 75 -7.3 -4.21194 | opp_overlap 1565443 1565449 GGGTAGCATTTAAAA TATTTTGTATA TATTAT TATACAAAATA TTTTAATTTATTAAA TERM 2281 1565449 - 1565476 + F 79 -7.3 -4.67942 | opp_overlap 1565449, overlap 1565443 GGGTAGCATTTAAAA TATTTTGTATA TATTAT TATACAAAATA TTTTAATTTATTAAA TERM 2282 1565675 - 1565645 - f 100 -14.3 -4.72272 | opp_overlap 1565645 1565650, overlap 1565650 CCTCCTTATTAAAAA TAAAAGAACCCTA TTTAC TAGGGTTCTTTTA TTGTGTAGTTTCAAT TERM 2283 1565645 - 1565675 + F 100 -14.3 -3.65112 | opp_overlap 1565645 1565650, overlap 1565650 CCTCCTTATTAAAAA TAAAAGAACCCTA TTTAC TAGGGTTCTTTTA TTGTGTAGTTTCAAT TERM 2284 1565650 - 1565670 + F 100 -9.8 -4.86822 | opp_overlap 1565645 1565650, overlap 1565645 TTATTAAAAATAAAA GAACCCTA TTTAC TAGGGTTC TTTTATTGTGTAGTT TERM 2285 1565670 - 1565650 - f 100 -9.8 -5.3104 | opp_overlap 1565650 1565645, overlap 1565645 TTATTAAAAATAAAA GAACCCTA TTTAC TAGGGTTC TTTTATTGTGTAGTT TERM 2286 1566009 - 1565999 - f 75 -4 -5.55855 | GCTAAAAAAATAAAA TTGT AGT ACAA TAATAATAAATTCTA TERM 2287 1566465 - 1566448 - gf 85 -2.1 -6.07374 | ATAAAAAAGAAAAAA TTAAAAT AGCC ACTTTAA AAGGACCTACTGGTA CLK_0811 1566312 - 1567319 + | putative lipoprotein TERM 2288 1567376 - 1567390 + GF 100 -11.4 -4.87665 | TTTGGGTATTTATAT GGGAGC TTA GCTCCC TTTTTATAAATAACG CLK_0812 1567291 - 1568052 + | putative ABC transporter, permease protein CLK_0813 1568193 - 1568792 + | ABC transporter, ATP-binding protein TERM 2289 1568798 - 1568819 + F 83 -7.4 -5.02287 | opp_overlap 1568798 TAAATTATAGATTAA GCAAAGAT TTTTAT ATCTTTGC TTTTATATTTTTATA CLK_0814 1568877 - 1569200 + | putative ferric uptake regulatory protein CLK_0815 1569170 - 1569643 + | hypothetical protein TERM 2290 1569653 - 1569680 + F 100 -14.4 -3.44608 | opp_overlap 1569645 1569653, overlap 1569644 1569642 1569657 AAATAAATTATTAAA TTAAGCACCATT TATA AATGGTGCTTAA TTATGATGGCTGTTT TERM 2291 1569680 - 1569653 - f 100 -14.4 -3.93708 | opp_overlap 1569653 1569644 1569642 1569657, overlap 1569645 AAATAAATTATTAAA TTAAGCACCATT TATA AATGGTGCTTAA TTATGATGGCTGTTT TERM 2292 1569657 - 1569676 + F 90 -10.8 -3.4759 | opp_overlap 1569653 1569645, overlap 1569653 1569644 1569642 AAATTATTAAATTAA GCACCATT TATA AATGGTGC TTAATTATGATGGCT CLK_0816 1569770 - 1571041 + | zinc carboxypeptidase family protein rnz 1571328 - 1572365 + | ribonuclease Z CLK_0818 1572824 - 1574143 + | amino acid permease family protein CLK_0819 1574288 - 1574665 + | hypothetical protein TERM 2293 1574944 - 1574980 + G 83 -3.3 -5.80951 | opp_overlap 1574951 1574954 1574968, overlap 1574946 AACTAATACAGTTAT TTTAATATTATTATTTA TTA TAAATAATCAAATTAGA TTTTTTGTTTTAAAT CLK_0820 1574837 - 1575994 + | sensor histidine kinase TERM 2294 1576022 - 1576053 + F 100 -16 -3.62522 | opp_overlap 1576014, overlap 1576023 1576023 TAAACAGGGTTCTTG ACTTCAGAGGGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGAATTC TERM 2295 1576023 - 1576052 + F 100 -19.5 -2.77192 | opp_overlap 1576014, overlap 1576023 1576022 AAACAGGGTTCTTGA CTTCAGAGGGAGT TTTT ACTCCCTCTGAAG CTTATTAACAGAATT TERM 2296 1576058 - 1576097 + F 79 -8.8 -3.63922 | gap 1, opp_overlap 1576014 1576066, overlap 1576062 1576063 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTC ACTCCTTAGAAGTC-GTTA TCTTTTAGGAAAAAT TERM 2297 1576063 - 1576093 + F 82 -9.8 -2.96779 | opp_overlap 1576066, overlap 1576062 1576058 TGAAGCTTATTAACA GAATTCTTAGGAGT TTC ACTCCTTAGAAGTC GTTATCTTTTAGGAA TERM 2298 1576090 - 1576066 - f 90 -10.1 -3.71552 | opp_overlap 1576063 1576062 1576058 AGCTTATTAACAGAA TTCTTAGGAGT TTC ACTCCTTAGAA GTCGTTATCTTTTAG CLK_0821 1576280 - 1576933 + | LuxR family DNA-binding response regulator TERM 2299 1577023 - 1577042 + F 80 -9.4 -3.29727 | opp_overlap 1577023 1577035, overlap 1577021 ACCGTCCCCAAATAA TTAGTGAC TTAA GTCACTAA TGTTAGTTACTTAAG TERM 2300 1577042 - 1577023 - f 86 -9.4 -3.90922 | opp_overlap 1577021 1577023, overlap 1577035 ACCGTCCCCAAATAA TTAGTGAC TTAA GTCACTAA TGTTAGTTACTTAAG TERM 2301 1577070 - 1577112 + F 100 -10.9 -5.93809 | opp_overlap 1577070 1577069 AAGACAATGGTAAAG CTTCCTTAAATTTTCTATT ATATA ATTAGAAAATTTGAGGAGG TTTTTTTTATGAGCA CLK_0822 1577121 - 1578059 + | ABC transporter, ATP-binding protein CLK_0823 1578168 - 1579343 + | putative ABC transporter, permease protein CLK_0824 1579345 - 1580442 + | hypothetical protein CLK_0825 1580461 - 1580679 + | hypothetical protein CLK_0826 1581774 - 1581223 - | nitroreductase family protein TERM 2302 1582052 - 1582026 - R 76 -8.3 -3.68348 | opp_overlap 1582024, overlap 1582024 TAGATATAAAGAATA TAGATTATATT TAATT AATATAATCTA ACCTAATAATGGGAT CLK_0827 1582823 - 1582332 - | hypothetical protein TERM 2303 1582912 - 1582896 - R 78 -5.3 -5.11112 | opp_overlap 1582890 1582877 AAAGTTTAATAAAAA TTTTATA TAA TATAAAA ACCACCTTAATAAAG TERM 2304 1582931 - 1582914 - R 100 -9.9 -5.1764 | opp_overlap 1582912 TATATAATATAAAAA CCACCTT AATA AAGGTGG CGTGGTATTTGCTAT TERM 2305 1582950 - 1582970 + r 70 -7.1 -3.68024 | opp_overlap 1582954 1582962 GGTATTTGCTATTTA TATATTAAA ATA TTTAATATA TTATATATTACAAAG CLK_0828 1583194 - 1582991 - | major cold shock protein TERM 2306 1583061 - 1583072 + g 78 -4.4 -5.4833 | AATTGAACTTTTTGT CCTT CTTC AAGG TTTTTTCTTGGCTCA pepD 1583461 - 1584924 + | aminoacyl-histidine dipeptidase TERM 2307 1585002 - 1585026 + G 90 -8.1 -4.87291 | opp_overlap 1585002 CAAATCTAAAAAAAA TATTATAATAG GTG CTGTTATAATA TTTTTAGTTACACTA TERM 2308 1585026 - 1585002 - g 93 -5.9 -5.89947 | opp_overlap 1585002 CAAATCTAAAAAAAA TATTATAATAG GTG CTGTTATAATA TTTTTAGTTACACTA CLK_0830 1584958 - 1585875 + | TPR domain-containing protein TERM 2309 1585935 - 1585887 - f 87 -10.8 -3.25205 | gap 1, opp_overlap 1585902, overlap 1585902 CTAATATAGTAAAAC CAATAAATAAAAAAATTGTGCTT GATC AAGCACAATTTTTTTGCTT-TTG TAGACAGTTTATTAA TERM 2310 1585902 - 1585921 + F 100 -9.4 -5.81622 | opp_overlap 1585902 1585887 CAATAAATAAAAAAA TTGTGCTT GATC AAGCACAA TTTTTTTGCTTTTGT TERM 2311 1585921 - 1585902 - f 100 -9.4 -6.08342 | opp_overlap 1585902, overlap 1585887 CAATAAATAAAAAAA TTGTGCTT GATC AAGCACAA TTTTTTTGCTTTTGT TERM 2312 1586070 - 1586051 - f 83 -9.4 -3.5556 | overlap 1586054 CAAATTTTAAATTAA CAACTGTA TGGA TACAGTTG AAAAAATATCAAATT TERM 2313 1586163 - 1586202 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1586171, overlap 1586167 1586168 1586170 CCCTATAAAGATTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 2314 1586168 - 1586198 + F 79 -9.8 -2.75769 | opp_overlap 1586171, overlap 1586167 1586163 1586170 TAAAGATTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 2315 1586195 - 1586171 - f 90 -10.1 -3.73144 | opp_overlap 1586170 1586168 1586167 1586163 AGATTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG pdxK 1586373 - 1587209 + | pyridoxine kinase TERM 2316 1587439 - 1587390 - T 91 -12.7 -2.78278 | gap 1, opp_overlap 1587390 1587399, overlap 1587396 1587399 TTAATTATAGATAAG TTAAAAGAGGTTACCTGAAAATAA AAT TTATTTTCAGACAAC-TCTTCTAA TTTTTAGTAGTAATA TERM 2317 1587390 - 1587439 + T 76 -6.1 -4.78107 | gap 1, opp_overlap 1587390 1587396 1587399, overlap 1587399 TTAATTATAGATAAG TTAAAAGAGGTTACCTGAAAATAA AAT TTATTTTCAGACAAC-TCTTCTAA TTTTTAGTAGTAATA TERM 2318 1587433 - 1587396 - T 89 -9.5 -4.3487 | gap 1, opp_overlap 1587390 1587399, overlap 1587390 1587399 ATAGATAAGTTAAAA GAGGTTACCTGAAAATAA AAT TTATTTTCAGACAAC-TC TTCTAATTTTTAGTA TERM 2319 1587431 - 1587399 - T 89 -12.3 -2.84977 | opp_overlap 1587390 1587399, overlap 1587396 1587390 GATAAGTTAAAAGAG GTTACCTGAAAATAA AAT TTATTTTCAGACAAC TCTTCTAATTTTTAG TERM 2320 1587399 - 1587431 + T 70 -7.9 -3.45037 | opp_overlap 1587399 1587396 1587390, overlap 1587390 GATAAGTTAAAAGAG GTTACCTGAAAATAA AAT TTATTTTCAGACAAC TCTTCTAATTTTTAG CLK_0832 1588136 - 1587498 - | putative methionine-S-sulfoxide reductase TERM 2321 1588334 - 1588344 + H 73 -2.6 -5.72053 | opp_overlap 1588334, overlap 1588337 AAAAAACTTCAATAA TTTT AAA AAAA TTTTTTATTTCATTA TERM 2322 1588476 - 1588444 - H 95 -12.2 -3.71517 | opp_overlap 1588445, overlap 1588445 1588448 TAATAGTGAATATAA GTAAGGAGATAAGC GTAAT GCTTATCTCCTTAT TTTTTTATAATGTTA TERM 2323 1588445 - 1588475 + H 100 -16.4 -5.70829 | opp_overlap 1588444 1588445 1588448 AATAGTGAATATAAG TAAGGAGATAAGCG TAA TGCTTATCTCCTTA TTTTTTTATAATGTT TERM 2324 1588475 - 1588445 - H 100 -15.7 -2.82187 | opp_overlap 1588445, overlap 1588444 1588448 AATAGTGAATATAAG TAAGGAGATAAGC GTAAT GCTTATCTCCTTA TTTTTTTATAATGTT TERM 2325 1588472 - 1588448 - H 95 -13 -3.54784 | opp_overlap 1588445, overlap 1588445 1588444 AGTGAATATAAGTAA GGAGATAAGC GTAAT GCTTATCTCC TTATTTTTTTATAAT CLK_0833 1588951 - 1589715 + | peptide ABC transporter ATP-binding protein TERM 2326 1589846 - 1589832 - g 74 -7.2 -3.88618 | opp_overlap 1589831 AATATAATGATCAAA TTGCTA ATG TAGCAA ATGGTATGAAAACTG CLK_0834 1589702 - 1591591 + | peptide ABC transporter permease CLK_0835 1591764 - 1592261 + | hypothetical protein TERM 2327 1592314 - 1592330 + F 72 -3.7 -5.39721 | opp_overlap 1592314 1592315, overlap 1592315 ACATAAAGTAAGATA TCTAAGA GTT TCTTAGC TTTTTTATATAATGA TERM 2328 1592315 - 1592329 + F 70 -7.2 -3.82748 | opp_overlap 1592315 1592314, overlap 1592314 CATAAAGTAAGATAT CTAAGA GTT TCTTAG CTTTTTTATATAATG CLK_0836 1592700 - 1593401 + | DNA-binding response regulator CLK_0837 1593403 - 1594380 + | sensor histidine kinase TERM 2329 1594701 - 1594713 + G 71 -4.9 -4.78848 | opp_overlap 1594701, overlap 1594696 GGAGAGAATTTAGAA GAAAA AAT TTTTC TTTTGTATTTCAAGA CLK_0838 1594454 - 1595209 + | peptide ABC transporter ATP-binding protein TERM 2330 1596112 - 1596098 - g 81 -7.2 -4.62708 | opp_overlap 1596098 1596096 1596105 1596111 AATAGATAAAAAGAA GGATAT TCT ATATCC TATTGATATAGGTTA TERM 2331 1596386 - 1596366 - g 93 -8.5 -5.27399 | opp_overlap 1596365 GAAGATATTAAAAAA TATTATTTC AAT GAAATAATA AATATTAATGGTAAT CLK_0839 1595199 - 1597007 + | peptide ABC transporter permease CLK_0840 1597076 - 1597798 + | hypothetical protein TERM 2332 1598313 - 1598329 + G 81 -9.5 -3.65425 | GAAGATTGCTTATTT TCTGCTA CTG TAGCAGA TTTAGACTATATAGG CLK_0841 1598124 - 1599158 + | hypothetical protein TERM 2333 1599178 - 1599212 + F 100 -11 -4.87665 | opp_overlap 1599172 1599178 1599181 TATAATAAATTTAAA TAAGTCTATAAAGATA TTG TAACTTTATAGGCTTA TTTTTATGAATAAAA TERM 2334 1599212 - 1599178 - f 81 -8.8 -3.94868 | opp_overlap 1599178, overlap 1599172 1599181 TATAATAAATTTAAA TAAGTCTATAAAGATA TTG TAACTTTATAGGCTTA TTTTTATGAATAAAA CLK_0842 1599560 - 1600738 + | hemolysin CLK_0843 1600811 - 1601629 + | amino acid ABC transporter, amino acid-binding protein CLK_0844 1601642 - 1602307 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 2335 1602735 - 1602724 - g 72 -4.4 -5.09762 | opp_overlap 1602710 ATTGGAAGATAAAAA GGAT TATT ATCC TTCCAAGTTATCTGG CLK_0845 1602326 - 1603063 + | polar amino acid ABC transporter ATP-binding protein CLK_0846 1603200 - 1603418 + | putative DNA-binding protein TERM 2336 1603570 - 1603516 - T 72 -9.1 -2.65091 | opp_overlap 1603505 1603518 1603531 1603565, overlap 1603515 1603531 ATGTCAATTTACAAT TGTATATAATAAAAACACTATCA CTTATATTT TGATAGTGTTTTTATTATATATT TAAAGTATATTAATA TERM 2337 1603518 - 1603568 + T 100 -16.1 -3.66883 | opp_overlap 1603516 1603515 1603531, overlap 1603531 1603565 GTCAATTTACAATTG TATATAATAAAAACACTATCA CTTATATTT TGATAGTGTTTTTATTATATA TTTAAAGTATATTAA TERM 2338 1603555 - 1603531 - T 73 -4.4 -5.24796 | opp_overlap 1603518 1603531, overlap 1603516 1603515 TGTATATAATAAAAA CACTATCA CTTATATTT TGATAGTG TTTTTATTATATATT TERM 2339 1603531 - 1603555 + T 76 -4.4 -5.28561 | opp_overlap 1603531 1603516 1603515, overlap 1603518 TGTATATAATAAAAA CACTATCA CTTATATTT TGATAGTG TTTTTATTATATATT CLK_0847 1604885 - 1603617 - | D-alanyl-D-alanine carboxypeptidase family protein TERM 2340 1604243 - 1604284 + g 71 -3.2 -5.20735 | overlap 1604244 1604245 AGAGCTTGTTACTAT TTTCTATAGTCATTTTTG TACCTT TAGAAGTGACTATAGAGC TTTCTTTTTTATTAG CLK_0848 1605184 - 1605807 + | MutT/NUDIX NTP pyrophosphatase TERM 2341 1605813 - 1605865 + T 100 -13.1 -5.38348 | opp_overlap 1605813 1605825 AAAAAATTAATAAAA GTATATTAAATATTCCACCAACT TTCAATT AGTTGGTGGAATGTTTTAAATAC TTTTTTCCTGTTTTT TERM 2342 1605865 - 1605813 - T 100 -10.9 -4.95211 | opp_overlap 1605813, overlap 1605825 AAAAAATTAATAAAA GTATATTAAATATTCCACCAACT TTCAATT AGTTGGTGGAATGTTTTAAATAC TTTTTTCCTGTTTTT TERM 2343 1605853 - 1605825 - T 95 -11.9 -3.53452 | opp_overlap 1605813, overlap 1605813 AAAGTATATTAAATA TTCCACCAACT TTCAATT AGTTGGTGGAA TGTTTTAAATACTTT CLK_0849 1606205 - 1605858 - | hypothetical protein TERM 2344 1606292 - 1606311 + H 75 -9.4 -2.73408 | opp_overlap 1606291 1606290, overlap 1606296 TGTAGAAAAAATACC CAAAGCAA ACGA TTGCTTTG TAGTGTAATTTAAAT CLK_0850 1606551 - 1607714 + | NADH-dependent butanol dehydrogenase TERM 2345 1607731 - 1607747 + F 70 -3.7 -5.10154 | opp_overlap 1607730 1607732, overlap 1607732 TTTAATATAAAATAT ATACCTA TGT TAGGTAA TTTTTGATTTTAAAT TERM 2346 1608099 - 1608109 + G 72 -5.4 -4.7329 | AAAGGGGAATTTTTA TGGA ATG TCCA TTTTTAACTACTTTT CLK_0851 1608098 - 1608322 + | hypothetical protein TERM 2347 1608452 - 1608412 - f 100 -13.7 -3.51232 | overlap 1608408 TTTTGCTTAAAGCAA TATCTATACACTTAAAATA TTA TGCTTTAAGTGTATAGATA AGAAGCGATGCTTGA CLK_0852 1608495 - 1610015 + | C4-dicarboxylate transporter TERM 2348 1610084 - 1610031 - T 100 -7.8 -5.64873 | opp_overlap 1610033 1610038, overlap 1610033 1610038 TGTAATAATAAAAAA TTCAAAAGCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTATT GCTTATTATAAGTTA TERM 2349 1610033 - 1610082 + T 95 -12.6 -3.5861 | opp_overlap 1610031 1610033 1610038, overlap 1610038 TAATAATAAAAAATT CAAAAGCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTA TTGCTTATTATAAGT TERM 2350 1610082 - 1610033 - T 100 -14.8 -2.96752 | opp_overlap 1610033 1610038, overlap 1610031 1610038 TAATAATAAAAAATT CAAAAGCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTA TTGCTTATTATAAGT TERM 2351 1610077 - 1610038 - T 100 -12.5 -4.55016 | opp_overlap 1610033 1610038, overlap 1610033 1610031 ATAAAAAATTCAAAA GCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGC TTTTATTGCTTATTA TERM 2352 1610038 - 1610077 + T 100 -12.5 -4.84262 | opp_overlap 1610038 1610033 1610031, overlap 1610033 ATAAAAAATTCAAAA GCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGC TTTTATTGCTTATTA CLK_0853 1611638 - 1610157 - | putative nicotinate phosphoribosyltransferase TERM 2353 1611009 - 1610994 - G 74 -6.2 -4.38154 | opp_overlap 1610996, overlap 1611007 ATACTCTGTAGAAAA TAGTTG TATC CAACTA TGTGCCATAGTACCT CLK_0854 1612092 - 1612898 + | polar amino acid ABC transporter amino acid-binding protein TERM 2354 1613344 - 1613357 + G 72 -5.3 -4.79667 | AAAATATCTGTCCCT CCATT AGTA AATGG TTTTTCATCACTTTT CLK_0855 1612900 - 1613559 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 2355 1613627 - 1613641 + F 100 -10 -5.56263 | ATATTTGATCATTTC GCAGCT AAA AGCTGC TTTTTCTTTTGTAAT CLK_0856 1613690 - 1614238 + | hypothetical protein CLK_0857 1614333 - 1616345 + | putative ATP-dependent DNA helicase PcrA TERM 2356 1616621 - 1616605 - g 72 -5.2 -4.72127 | AGAGAAGATAGAAAA GCATAT AATAA ATATGC GTAAAGAAGGATATA TERM 2357 1616837 - 1616851 + G 78 -6.4 -4.77173 | GGAGATTTTCGTTCT TGGGCA ATT TGCTCA TTTCTTTTATCAACA TERM 2358 1617222 - 1617212 - g 70 -5.4 -4.66609 | TATCTCATCCAAAAA TGTC TTG GACA TTCAGATATAAAAAT CLK_0858 1616399 - 1617361 + | XerC/D integrase-recombinase protein CLK_0859 1617529 - 1617831 + | hypothetical protein TERM 2359 1617890 - 1617858 - f 74 -6.3 -4.67942 | TTGAATAAAGTAAAA GCACCTGAAAGAG TTGGTGG CTCTCGCAAGTGC AGACAATTAAATATT CLK_0860 1618305 - 1619483 + | AAA domain-contain protein TERM 2360 1619585 - 1619561 - T 87 -10.1 -3.40566 | opp_overlap 1619561 1619565, overlap 1619565 ATATTATATGTATAA GAAATGAGGGA TCA TTCCTCATTTC TTATGTAGCAATGTA TERM 2361 1619561 - 1619585 + T 95 -12.3 -3.49951 | opp_overlap 1619561 1619565, overlap 1619565 ATATTATATGTATAA GAAATGAGGGA TCA TTCCTCATTTC TTATGTAGCAATGTA TERM 2362 1619565 - 1619581 + T 77 -7.3 -4.38927 | opp_overlap 1619565 1619561, overlap 1619561 TATATGTATAAGAAA TGAGGGA TCA TTCCTCA TTTCTTATGTAGCAA CLK_0861 1621045 - 1619624 - | type I restriction enzyme r protein n terminus (hsdr_n) TERM 2363 1620809 - 1620836 + g 78 -6.6 -4.56153 | overlap 1620806 TTCTATTTTTGTTGT TTTATTTTTTGT TTCG ATAAAAAATAAA TTATTTTTATCATCA TERM 2364 1621146 - 1621178 + r 80 -9.3 -3.1247 | opp_overlap 1621151, overlap 1621151 ACACTTTTACAATAT AAAAAGGCTAGGA AATTTAA TCCTAGCCTTTTA TTACCTCTAAAACAT TERM 2365 1621173 - 1621151 - R 100 -9.2 -5.1523 | opp_overlap 1621146 1621151 TTTACAATATAAAAA GGCTAGGA AATTTAA TCCTAGCC TTTTATTACCTCTAA TERM 2366 1621151 - 1621173 + r 93 -9.2 -4.70169 | opp_overlap 1621151, overlap 1621146 TTTACAATATAAAAA GGCTAGGA AATTTAA TCCTAGCC TTTTATTACCTCTAA CLK_0862 1621371 - 1621168 - | hypothetical protein TERM 2367 1621473 - 1621454 - H 78 -8 -4.27843 | TTTAAACATAAATAA TTATCATG TTGA CATGATAA AAAGTAAGGTATATA CLK_0863 1621651 - 1621956 + | hypothetical protein CLK_0864 1621949 - 1622107 + | hypothetical protein TERM 2368 1622341 - 1622323 - g 74 -2.4 -5.61277 | overlap 1622325 TATAAAAAAACAAAA CATAAACC AGT GGTTTAAA GGTAGTAGAAAAATA TERM 2369 1622339 - 1622325 - g 79 -7.2 -4.38305 | overlap 1622323 TAAAAAAACAAAACA TAAACC AGT GGTTTA AAGGTAGTAGAAAAA CLK_0865 1622240 - 1622896 + | DNA-binding protein CLK_0866 1623362 - 1623520 + | hypothetical protein CLK_0867 1623567 - 1625072 + | hypothetical protein TERM 2370 1625092 - 1625111 + F 75 -9.3 -2.61727 | opp_overlap 1625091 ATTAATTACATATAG GGGTGCT TTAGTC AGCACCC TACGTTATGATAGCT CLK_0868 1625169 - 1628546 + | hypothetical protein CLK_0869 1628661 - 1628837 + | meprin and traf domain-containing protein CLK_0870 1628862 - 1631048 + | hypothetical protein TERM 2371 1631270 - 1631293 + F 80 -2.6 -6.02919 | gap 1 TAATAAGTTTTATAA GATATATG-TA AAT TATCATGTATC TTTTTTTGTTTATAA TERM 2372 1631323 - 1631344 + F 77 -8.7 -3.44146 | opp_overlap 1631320 ATCATAACATTATCA GTCGCCC TTAGAGTC GGGCGAC TTCGTTGTGGAAGGA CLK_0871 1631351 - 1632112 + | hypothetical protein TERM 2373 1632102 - 1632125 + F 82 -4.6 -5.71712 | ATGTAGACTTTATTA GGACTATTTA AAAT TGATTAGTCC TTTTTTTATATAAAA CLK_0872 1632184 - 1632882 + | hypothetical protein TERM 2374 1632914 - 1632901 - f 83 -6.7 -5.24989 | TTACATATTAAAAAA CGAAG GTAA CTTCG TAAATGAAAACCCAC TERM 2375 1633056 - 1633092 + F 86 -4.6 -5.94713 | TACATATAAGTCAAG CGCAATAGATATAGGA AAAAA TTTTATATCTTTTGTG TTTTTTTTGTACGAT CLK_0873 1633178 - 1633693 + | endonuclease TERM 2376 1633701 - 1633723 + F 90 -9.9 -3.83437 | overlap 1633699 AAGTATAAATTTAGG GGTTGGTGA TTTTT TCACCGACC TATTTTAATTAATGA CLK_0874 1633753 - 1633995 + | hypothetical protein CLK_0875 1634023 - 1634211 + | hypothetical protein CLK_0876 1634284 - 1634496 + | hypothetical protein CLK_0877 1634565 - 1634747 + | hypothetical protein TERM 2377 1634773 - 1634792 + F 79 -5 -5.61881 | TATCAATAGTTTAAA GAGTCATA TCAA TGTGGCTC TTTTTATTTTTACAA CLK_0878 1634872 - 1635117 + | hypothetical protein CLK_0879 1635237 - 1635719 + | hypothetical protein CLK_0880 1635768 - 1636349 + | hypothetical protein TERM 2378 1636403 - 1636420 + F 85 -6.3 -5.5604 | opp_overlap 1636403 TTATATAATCTTAAA GACGCTT AATT AAGTGTC TTTTTTATTGCTTGA TERM 2379 1636797 - 1636765 - g 71 -6 -4.5032 | gap 1, opp_overlap 1636764 TATAGTAAGAAGAAA GTATAATAA-TATAT GTTT ATATAGTTATTATAC ATTACATGAAATTAA CLK_0881 1636583 - 1637026 + | hypothetical protein TERM 2380 1637007 - 1637029 + F 100 -6.4 -6.04324 | ATGAAAAGGAATTTA GTACTAATTT AAA AAGTTAGTGC TTTTTTATTTTTTGA CLK_0882 1637172 - 1637657 + | P27 family phage terminase small subunit TERM 2381 1639139 - 1639123 - g 77 -4.5 -5.25699 | overlap 1639117 1639124 AGTATATAATAAAAA CTTTTTC TAT GAAAAAA ATGAATTATTAGATT CLK_0883 1637654 - 1639345 + | putative phage terminase, large subunit TERM 2382 1639424 - 1639445 + G 88 -3 -6.04953 | overlap 1639426 TATTGATTTTGGGAG GATGTAGT ATATTA ACTACAGC TTTTTTTATTTATGT CLK_0884 1639369 - 1639551 + | hypothetical protein CLK_0885 1639595 - 1640845 + | HK97 family phage portal protein CLK_0886 1641000 - 1641563 + | prophage LambdaBa02, Clp protease family protein CLK_0887 1641637 - 1642869 + | HK97 family phage major capsid protein CLK_0888 1642953 - 1643246 + | phi-105 family phage protein CLK_0889 1643236 - 1643604 + | putative phage head-tail adaptor CLK_0890 1643605 - 1643964 + | HK97 family phage protein CLK_0891 1643980 - 1644336 + | hypothetical protein TERM 2383 1644331 - 1644349 + F 100 -10.4 -5.36441 | opp_overlap 1644329 1644333 ATAAGTTTACCAATG GACTAGTT TAA AACTAGTC TTTTTTATGTGAAAA TERM 2384 1644766 - 1644779 + G 74 -5.3 -4.9138 | opp_overlap 1644766 CTAGATATGGAATAA TGTAC AAGG GTACA TTTTCTTTAAGTGAT CLK_0892 1644399 - 1644980 + | phi13 family phage major tail protein TERM 2385 1644987 - 1645005 + F 84 -8.9 -4.31859 | overlap 1644983 GAAGGTTAATTTATG GGGTAGA AATAA TCTACCC TTATTATTTTGTTGA CLK_0893 1645038 - 1645430 + | hypothetical protein TERM 2386 1645434 - 1645466 + F 82 -4.2 -5.63517 | opp_overlap 1645435, overlap 1645435 GAAAAAAACTAAATG ACCAGTCGAAGT ATGAAATTG ACTTTGACTGGC TTTTTTATTTAGCAA TERM 2387 1645435 - 1645465 + F 75 -7.7 -3.97026 | opp_overlap 1645435, overlap 1645434 AAAAAAACTAAATGA CCAGTCGAAGT ATGAAATTG ACTTTGACTGG CTTTTTTATTTAGCA CLK_0894 1645544 - 1645663 + | hypothetical protein TERM 2388 1645668 - 1645685 + F 80 -6.3 -5.24129 | opp_overlap 1645668, overlap 1645654 CATTTCTATAAGATA GGCACTT TGAT AAGTGTC TTTTTTATGGAAAAA TERM 2389 1647096 - 1647083 - f 71 -6.7 -4.1196 | AAGTCATGGTTAAAA TGCAG TCAG CTGCA ACCATAGGTTCAGAT TERM 2390 1649796 - 1649783 - g 70 -3.9 -5.16237 | overlap 1649788 AAGCGGATTAAAAAA TACTA TTTA TAGTA ATAAAGGAATGGAGC CLK_0898 1649670 - 1650539 + | hypothetical protein CLK_0899 1650543 - 1651700 + | hypothetical protein CLK_0900 1651708 - 1653000 + | hypothetical protein CLK_0901 1653011 - 1653307 + | hypothetical protein CLK_0902 1653307 - 1653468 + | hypothetical protein TERM 2391 1653525 - 1653538 + F 100 -5.3 -6.17669 | opp_overlap 1653525 GTAAGCATAAGTTAA GACTA TAGA TAGTC TTTTTTTGTTTTGTT CLK_0903 1653639 - 1653812 + | hypothetical protein CLK_0904 1653965 - 1654840 + | hypothetical protein TERM 2392 1654861 - 1654879 + F 80 -3.2 -5.93252 | opp_overlap 1654861 TAAAGGTAAAATAAA GACTAT TAACTAT ATAGTC TTTTTTATTTTTCAC CLK_0905 1654974 - 1655198 + | hypothetical protein CLK_0906 1655200 - 1655373 + | hypothetical protein CLK_0907 1655373 - 1656131 + | N-acetylmuramoyl-L-alanine amidase CLK_0908 1656260 - 1656505 + | hypothetical protein TERM 2393 1656969 - 1656955 - g 89 -3.6 -6.12328 | opp_overlap 1656957, overlap 1656957 ACAATATAAAAAAAA TATATG TTA CATACA TAATTATAACTTTTT TERM 2394 1657784 - 1657802 + G 86 -3.2 -5.9362 | opp_overlap 1657784 1657787, overlap 1657787 AAATTCAAATATTAA TTATATAG AAT CTATATTA TTTTTTTATATTTTG TERM 2395 1657787 - 1657799 + G 72 -4.9 -4.94703 | opp_overlap 1657787 1657784, overlap 1657784 TTCAAATATTAATTA TATAG AAT CTATA TTATTTTTTTATATT CLK_0909 1656603 - 1657961 + | hypothetical protein CLK_0910 1658470 - 1658772 + | hypothetical protein TERM 2396 1658914 - 1658944 + F 80 -8.5 -4.27316 | opp_overlap 1658914 ATATAATTTTATTAA GCTCATATTCT AAAAATTAG AGAATATGAGC TTTTAAATTAAGAAA TERM 2397 1658944 - 1658914 - f 72 -8.5 -3.19921 | opp_overlap 1658914 ATATAATTTTATTAA GCTCATATTCT AAAAATTAG AGAATATGAGC TTTTAAATTAAGAAA TERM 2398 1659802 - 1659785 - g 70 -3.5 -5.04908 | gap 1 AAAATAAAAAAACAA TGT-TCAG AAT CTGACACA GTAGAATACATAGAT CLK_0911 1658975 - 1661218 + | putative cell division protein FtsA TERM 2399 1661340 - 1661296 - f 90 -11.7 -3.08133 | gap 2, opp_overlap 1661306 TATCCAGGGACGTAA CCGCTCT-TTACTCCCA-CTT TAAAG AAGATGGGAGTATTAGAGCGG GTAGTCATCGGATAA TERM 2400 1661722 - 1661698 - g 83 -3 -5.80364 | ACTTCAAGAAAAAAA TATTTGTGAT TATTC ATCAAAAATA GAAGGAAAAATGCAT TERM 2401 1662028 - 1662017 - g 78 -4.4 -5.3658 | overlap 1661995 1662024 ACCATAAAAATAAAA GGAA AGGG TTCC CATGGAGCTAGGCCT CLK_0912 1661438 - 1662616 + | amidohydrolase family protein CLK_0913 1662672 - 1663523 + | N-acetylmuramoyl-L-alanine amidase TERM 2402 1663565 - 1663617 + F 95 -11.7 -3.5394 | opp_overlap 1663568 1663570, overlap 1663568 1663570 TTAATGTTATATATT TAATATATTCCACTAAGGTAGATTT TTC ATGTTTACTTTAGTGGAATATCTTA TTTAAAGAAACCTTT TERM 2403 1663568 - 1663614 + F 81 -9 -3.90744 | opp_overlap 1663568 1663570, overlap 1663565 1663570 ATGTTATATATTTAA TATATTCCACTAAGGTAGATTT TTC ATGTTTACTTTAGTGGAATATC TTATTTAAAGAAACC TERM 2404 1663570 - 1663612 + F 95 -11.6 -3.54488 | opp_overlap 1663570 1663568, overlap 1663568 1663565 GTTATATATTTAATA TATTCCACTAAGGTAGATTT TTC ATGTTTACTTTAGTGGAATA TCTTATTTAAAGAAA CLK_0914 1664003 - 1664956 + | RluA family pseudouridine synthase spoVB 1664988 - 1666595 + | stage V sporulation protein B TERM 2405 1666601 - 1666637 + T 100 -9.6 -5.82036 | opp_overlap 1666601 AATAAGATAAAAAAA CATTAGATTGGCAAGG TGTTT TCTTGCTAACCTAATG TTTTTTATTTGTTAT TERM 2406 1666637 - 1666601 - T 100 -8.9 -5.86465 | opp_overlap 1666601 AATAAGATAAAAAAA CATTAGATTGGCAAG GTGTTTT CTTGCTAACCTAATG TTTTTTATTTGTTAT CLK_0916 1668137 - 1666632 - | polysaccharide biosynthesis family protein TERM 2407 1667492 - 1667505 + g 72 -2.5 -5.36441 | TATTATAGCTAAATT TAAAT TTCA ATTTA TTTTTTATATAAAAA CLK_0917 1668470 - 1669033 + | hypothetical protein TERM 2408 1669056 - 1669031 - T 100 -9.2 -5.10877 | opp_overlap 1669031 ATAATAAATGAAAAA TAGAACTTAG ATTTAA CTAAGTTCTA TTTTTTAACCCTTTG TERM 2409 1669031 - 1669056 + T 100 -9.2 -5.07107 | opp_overlap 1669031 ATAATAAATGAAAAA TAGAACTTAG ATTTAA CTAAGTTCTA TTTTTTAACCCTTTG CLK_0918 1669461 - 1669054 - | hypothetical protein TERM 2410 1670082 - 1670068 - H 90 -10 -3.71848 | opp_overlap 1670056 1670067 1670066 TGTGGGTAGTAATAA CTACGC CTT GCGTAG AGCTTTTATAACTTT TERM 2411 1670221 - 1670177 - H 100 -10.4 -4.43832 | opp_overlap 1670183, overlap 1670174 TAATATATAAAAGAA TAAGAAGCCAAATTACTT TTATTATTT AAGTAATTTGGCTTTTTA TATAAATAATTTAAT TERM 2412 1670183 - 1670215 + H 100 -9.4 -4.99035 | opp_overlap 1670177 1670174 ATAAAAGAATAAGAA GCCAAATTACTT TTATTATTT AAGTAATTTGGC TTTTTATATAAATAA TERM 2413 1670668 - 1670658 - g 72 -2.6 -5.49569 | GAGCAATAGAAAAAA TATA TGA TATA GCATCTAATTTGAAA CLK_0919 1670570 - 1671769 + | alcohol dehydrogenase, iron-containing TERM 2414 1671822 - 1671798 - f 79 -7.3 -4.62002 | AGTAATCATAGAAAA GCTTTTATATA GTG TATATGAAAGC AAAAAAATTAATTTA TERM 2415 1671903 - 1671882 - f 76 -4.6 -5.38549 | opp_overlap 1671884 TGGAAATAATAAAAA TATAAATG TGCTCT CATTTATA TTAAGCCTTCTTAAA CLK_0920 1672129 - 1674447 + | ATP-dependent protease TERM 2416 1675748 - 1675706 - T 95 -13.3 -2.98729 | gap 1, opp_overlap 1675706 1675710, overlap 1675710 1675713 TATAATTATTATATA TAAATAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTATTTA TTTAAATTCAGTTTT TERM 2417 1675706 - 1675748 + T 100 -13.3 -3.80083 | gap 1, opp_overlap 1675706 1675710 1675713, overlap 1675710 TATAATTATTATATA TAAATAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTATTTA TTTAAATTCAGTTTT TERM 2418 1675744 - 1675710 - T 86 -9.7 -4.15632 | gap 1, opp_overlap 1675706 1675710, overlap 1675706 1675713 ATTATTATATATAAA TAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTA TTTATTTAAATTCAG TERM 2419 1675710 - 1675744 + T 93 -9.7 -4.50159 | gap 1, opp_overlap 1675710 1675706 1675713, overlap 1675706 ATTATTATATATAAA TAAGATGATTTCT-AT GCAA ATAAGAAATCATCTTA TTTATTTAAATTCAG TERM 2420 1675741 - 1675713 - T 73 -7 -4.19276 | gap 1, opp_overlap 1675710 1675706, overlap 1675710 1675706 ATTATATATAAATAA GATGATTTCT-AT GCAA ATAAGAAATCATC TTATTTATTTAAATT npr 1677527 - 1675800 - | thermolysin metallopeptidase TERM 2421 1677603 - 1677561 - R 90 -12.5 -2.98729 | opp_overlap 1677561 1677565, overlap 1677565 1677568 TATAATTAGTATATA TAAATAAGATGATTTCT ATTTAAGTA AGAAATCATCTTATTTA TTTAAATCTAATTTT TERM 2422 1677561 - 1677603 + r 95 -12.5 -3.75832 | opp_overlap 1677561 1677565 1677568, overlap 1677565 TATAATTAGTATATA TAAATAAGATGATTTCT ATTTAAGTA AGAAATCATCTTATTTA TTTAAATCTAATTTT TERM 2423 1677599 - 1677565 - R 82 -8.9 -4.15632 | opp_overlap 1677561 1677565, overlap 1677561 1677568 ATTAGTATATATAAA TAAGATGATTTCT ATTTAAGTA AGAAATCATCTTA TTTATTTAAATCTAA TERM 2424 1677565 - 1677599 + r 86 -8.9 -4.48299 | opp_overlap 1677565 1677561 1677568, overlap 1677561 ATTAGTATATATAAA TAAGATGATTTCT ATTTAAGTA AGAAATCATCTTA TTTATTTAAATCTAA npr 1679442 - 1677664 - | thermolysin metallopeptidase TERM 2425 1679176 - 1679193 + g 78 -4.1 -5.40072 | overlap 1679177 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCAAA TERM 2426 1679177 - 1679192 + g 74 -7.6 -3.83561 | overlap 1679176 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCAA npr 1681351 - 1679558 - | thermolysin metallopeptidase TERM 2427 1681085 - 1681102 + g 78 -4.1 -5.40072 | overlap 1681086 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCGAA TERM 2428 1681086 - 1681101 + g 74 -7.6 -3.83561 | overlap 1681085 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCGA TERM 2429 1681383 - 1681432 + r 100 -18.5 -4.13077 | opp_overlap 1681391 GTTAATATATTTTTA CTTATAAACCTATTGATATTT GTATAGGA AAATATCAATAGGTTTATAAG TTTATATGATATATT TERM 2430 1681424 - 1681391 - R 93 -9.9 -3.92075 | opp_overlap 1681383 ATTTTTACTTATAAA CCTATTGATATTT GTATAGGA AAATATCAATAGG TTTATAAGTTTATAT npr 1683215 - 1681470 - | thermolysin metallopeptidase TERM 2431 1683249 - 1683296 + r 100 -11.2 -4.52589 | gap 1, opp_overlap 1683256 ATAGCATATTTTTAC TTATAAACCTATTAATATTTATA TAG TA-AAATATTAATAGGCTTATAA TTTTATATAAAAAAA TERM 2432 1683289 - 1683256 - R 86 -9.3 -3.92075 | gap 1, opp_overlap 1683249 ATTTTTACTTATAAA CCTATTAATATTTATA TAG TA-AAATATTAATAGG CTTATAATTTTATAT TERM 2433 1683340 - 1683316 - R 74 -8.9 -3.03441 | opp_overlap 1683302 1683321, overlap 1683298 1683321 ATATAAAAAAATTTA TATAATTAAAA TAT TTTTAATTATA ATGGTAATTGAGGTG CLK_0927 1685078 - 1683336 - | bacillolysin TERM 2434 1684596 - 1684607 + g 70 -4.4 -4.98522 | opp_overlap 1684585, overlap 1684587 1684585 GCTATCGCATTTTAT GCTA TCTT TAGC TTTTTCTATAGCATT nadC 1686517 - 1685681 - | nicotinate-nucleotide pyrophosphorylase TERM 2435 1685978 - 1685993 + g 74 -3.3 -5.4505 | AGGGGCATTGTTTTT TGCTA AAGTTA TAGCA TTTTTTATTCCACCA nadB 1687799 - 1686498 - | L-aspartate oxidase TERM 2436 1687757 - 1687741 - G 71 -7.3 -3.70902 | TTTCTTAGATTTAAA GCTGAAT ATA ATCCAGC TACGCCGCTTCCTGC nadA 1688716 - 1687802 - | quinolinate synthetase complex, A subunit TERM 2437 1687955 - 1687982 + g 95 -6.4 -5.93252 | GCAGGTCATTCCTTC TCCAGGGAAATA GAAT TGTTTTTCTGGA TTTTTTATTTTTAAC TERM 2438 1689610 - 1689594 - g 70 -5.3 -4.57474 | GGAAGGCAGACAAAA TAAAAAT AGT ATTTTTA GATAACGAGGAAAGC CLK_0931 1689086 - 1690012 + | hypothetical protein hlyIII 1690747 - 1690109 - | hemolysin III TERM 2439 1690355 - 1690375 + g 72 -7 -4.17023 | AGTAGATAGTTTTTC GTATTTAC CAGTT GTAAATAC TTTTAAAATGATTCC TERM 2440 1690857 - 1690818 - R 74 -8.3 -3.3382 | gap 1, opp_overlap 1690826, overlap 1690826 TGTACTATACATTAA TAA-AAAAATCACCATTG CTAAC CAATAGTGATTTTTATTA ATGAGATAGATTAAA TERM 2441 1690826 - 1690848 + r 74 -4.9 -5.1356 | opp_overlap 1690818 1690826 ACATTAATAAAAAAA TCACCATTG CTAAC CAATAGTGA TTTTTATTAATGAGA TERM 2442 1690848 - 1690826 - R 95 -7.1 -5.85737 | opp_overlap 1690826, overlap 1690818 ACATTAATAAAAAAA TCACCATTG CTAAC CAATAGTGA TTTTTATTAATGAGA ychF 1691965 - 1690868 - | GTP-binding protein YchF TERM 2443 1691188 - 1691202 + g 86 -7.2 -5.2112 | CTTCTAAGCCATATT CTGAAA GCA TTTCAG TTTTTTCATCATCTT mraZ 1692657 - 1693127 + | mraZ protein TERM 2444 1693350 - 1693333 - g 88 -4.1 -5.66989 | opp_overlap 1693333, overlap 1693336 GAAATATTAAAAAAA TTATCCC ATAA GGGAAAA TTGATAGGCATAGAT mraW 1693207 - 1694136 + | S-adenosyl-methyltransferase MraW CLK_0936 1694218 - 1694721 + | putative cell division protein FtsL TERM 2445 1695054 - 1695042 - g 78 -6.3 -4.7329 | AAAACTATCTAAAAA TGATG TAG CATCA AAACTTTCAAAAGCA CLK_0937 1694737 - 1696917 + | stage V sporulation protein D TERM 2446 1696928 - 1696972 + F 81 -7.4 -4.81852 | gap 1, opp_overlap 1696930, overlap 1696930 1696967 ATTAATATAATAAAA AATTGGCATGCAGTAATACAG GGTT CTGTG-TATTGCATGCTAATA TTTTGTTAGTTCTAC TERM 2447 1696930 - 1696970 + F 93 -10 -4.01597 | gap 1, opp_overlap 1696930, overlap 1696928 1696967 TAATATAATAAAAAA TTGGCATGCAGTAATACAG GGTT CTGTG-TATTGCATGCTAA TATTTTGTTAGTTCT TERM 2448 1696970 - 1696930 - f 77 -3.4 -5.64304 | gap 1, opp_overlap 1696928 1696930 1696967 TAATATAATAAAAAA TTGGCATGCAGTAATACAG GGTT CTGTGT-ATTGCATGCTAA TATTTTGTTAGTTCT TERM 2449 1698478 - 1698465 - g 72 -5.3 -4.78237 | GATGCCATAAGAAAA GCTAT GGAA ATAGC AAAAGAAAATGATGT murE 1697148 - 1698599 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase murF 1698625 - 1700013 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 2450 1700200 - 1700187 - g 90 -4.5 -5.72616 | opp_overlap 1700192 AGTCATAGAAAAAAA GCAGG TACC CCTAC TATGGGAGGAGTAAT mraY 1700049 - 1701002 + | phospho-N-acetylmuramoyl-pentapeptide-transferase CLK_0941 1701081 - 1702193 + | cell cycle protein FtsW TERM 2451 1702231 - 1702186 - f 79 -8.8 -3.79633 | gap 1, opp_overlap 1702187 1702199 1702224, overlap 1702187 1702199 GACAAACTGAAAATA CTATATAAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTTATATAT TCTTAAATTAATATT TERM 2452 1702230 - 1702187 - f 89 -12.3 -2.86695 | gap 1, opp_overlap 1702187 1702199 1702224, overlap 1702186 1702199 ACAAACTGAAAATAC TATATAAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTTATATA TTCTTAAATTAATAT TERM 2453 1702187 - 1702230 + F 95 -12.3 -3.74928 | gap 1, opp_overlap 1702187 1702186 1702199, overlap 1702199 1702224 ACAAACTGAAAATAC TATATAAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTTATATA TTCTTAAATTAATAT TERM 2454 1702199 - 1702217 + F 100 -7.5 -6.08563 | opp_overlap 1702187 1702186 1702199, overlap 1702187 TACTATATAAAAAAA TAGCAAC ATTTA GTTGCTA TTTTTTTTATATATT TERM 2455 1702217 - 1702199 - f 100 -7.5 -5.74122 | opp_overlap 1702199 1702187, overlap 1702187 1702186 TACTATATAAAAAAA TAGCAAC ATTTA GTTGCTA TTTTTTTTATATATT TERM 2456 1702256 - 1702231 - f 76 -9.3 -2.87344 | opp_overlap 1702224 TATTTTTTTTATATA TTCTTAAATTA ATAT TAATTTAAGAA TACTAGGATATAGTT TERM 2457 1702787 - 1702758 - g 79 -5.9 -5.16841 | gap 1, opp_overlap 1702757 TTATACTAACAAAAA GGATGCAATAGAAA ATA TTTC-ATTGAATCC ATATATTGAGGAAGT CLK_0942 1702516 - 1703286 + | cell division protein FtsQ CLK_0943 1703297 - 1704010 + | hypothetical protein sbp 1704044 - 1704394 + | small basic protein CLK_0945 1704395 - 1705126 + | hypothetical protein CLK_0946 1705219 - 1705890 + | hypothetical protein CLK_0947 1705911 - 1706363 + | hypothetical protein CLK_0948 1706380 - 1706655 + | YGGT family protein TERM 2458 1707140 - 1707156 + G 79 -8 -4.19735 | opp_overlap 1707140 AGATGGATTTAAAAA CTCAGG TGATT CCTGAG TTTAATTTTGAAGAA TERM 2459 1707156 - 1707140 - g 83 -8 -4.67755 | opp_overlap 1707140 AGATGGATTTAAAAA CTCAGG TGATT CCTGAG TTTAATTTTGAAGAA CLK_0949 1706656 - 1707426 + | hypothetical protein divIVA 1707442 - 1708101 + | cell-division initiation protein DivIVA TERM 2460 1708136 - 1708102 - f 100 -13.9 -3.54739 | opp_overlap 1708107, overlap 1708107 ATAAAAGAAGATTAA CAAAAGAGTTTTTGC ATATA GCAAAAACTCTTTTA AGTTATGTATAAGTT TERM 2461 1708131 - 1708107 - f 100 -11.6 -4.79657 | opp_overlap 1708107, overlap 1708102 AGAAGATTAACAAAA GAGTTTTTGC ATATA GCAAAAACTC TTTTAAGTTATGTAT TERM 2462 1708107 - 1708131 + F 100 -11.6 -4.3487 | opp_overlap 1708107 1708102 AGAAGATTAACAAAA GAGTTTTTGC ATATA GCAAAAACTC TTTTAAGTTATGTAT aroB 1708507 - 1709595 + | 3-dehydroquinate synthase mtnN 1709596 - 1710288 + | MTA/SAH nucleosidase TERM 2463 1710834 - 1710813 - g 81 -3.7 -5.5762 | AGGAAAGACAAAAAA GCCTATTCT TTTA AAAAGAGGC ATGAGTGCTACTCTT aroF 1710409 - 1711209 + | phospho-2-dehydro-3-deoxyheptonate aldolase aroA 1711376 - 1712704 + | 3-phosphoshikimate 1-carboxyvinyltransferase CLK_0955 1712921 - 1713544 + | putative RNA polymerase-binding protein DksA TERM 2464 1713633 - 1713657 + F 73 -8.9 -2.84812 | opp_overlap 1713632 1713633, overlap 1713648 TTTTAAATTAGAAAT TTTTATATAAA GTA TTTATATAAAA TATAATAATATAAAT TERM 2465 1713657 - 1713633 - f 74 -8.9 -3.0771 | opp_overlap 1713633 1713648, overlap 1713632 TTTTAAATTAGAAAT TTTTATATAAA GTA TTTATATAAAA TATAATAATATAAAT lspA 1713767 - 1714210 + | signal peptidase II CLK_0957 1714214 - 1715131 + | RluA family pseudouridine synthase TERM 2466 1715479 - 1715449 - f 80 -9.8 -2.7736 | opp_overlap 1715452, overlap 1715446 ATCTACACGGAATTA TTATGCCTTTACTC ACA GAGTAAAGGCATTT TTTATCTGATTATTA TERM 2467 1715452 - 1715476 + F 100 -15.9 -5.42131 | opp_overlap 1715449 1715446 TACACGGAATTATTA TGCCTTTACTC ACA GAGTAAAGGCA TTTTTTATCTGATTA TERM 2468 1715763 - 1715752 - g 73 -5.8 -4.5448 | TAGGTATAAAAAGAA GAGG GTAC CCTC TAGCTAAGAGAATAG pyrR 1715628 - 1716164 + | pyrimidine operon regulatory protein/uracil phosphoribosyltransferase CLK_0959 1716208 - 1717551 + | uracil permease (Uracil transporter) TERM 2469 1717584 - 1717611 + T 100 -15.8 -4.51238 | opp_overlap 1717584 ATAGAGAACAGAGAA GGCACTAATGTA GATA TACATTAGTGCC TTTATGTTTTGTGGA TERM 2470 1717611 - 1717584 - T 100 -15.8 -3.75578 | opp_overlap 1717584 ATAGAGAACAGAGAA GGCACTAATGTA GATA TACATTAGTGCC TTTATGTTTTGTGGA CLK_0960 1717746 - 1717633 - | putative small multi-drug export protein xth 1717855 - 1718616 + | exodeoxyribonuclease III TERM 2471 1719355 - 1719343 - g 76 -6.2 -4.65446 | opp_overlap 1719347 AGGATATAGAGAAAA CGCC GGAGA GGCG CCTCTTAAAGAAACT CLK_0962 1718843 - 1719985 + | putative methyltransferase TERM 2472 1720336 - 1720311 - f 75 -9.2 -2.73635 | overlap 1720310 TAAAGGTGGTGAAAT TTTATGGGAT TATAGT ATCCCATAAA TAAAATATGGAAAAA CLK_0963 1720343 - 1720888 + | hypothetical protein modA 1721068 - 1721880 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 2473 1722267 - 1722246 - g 79 -7.3 -4.41353 | overlap 1722257 CCATATATATGAAAA TGCAGCAAG AACA CTTGGTGCA AGTGAGTGGAGGATT TERM 2474 1722271 - 1722257 - g 80 -8.6 -3.76778 | overlap 1722246 AAAATGCAGCAAGAA CACTTG GTG CAAGTG AGTGGAGGATTTTTT modB 1721890 - 1722561 + | molybdate ABC transporter, permease protein CLK_0966 1722884 - 1723555 + | putative molybdate ABC transporter, ATP-binding protein CLK_0967 1723609 - 1724178 + | hypothetical protein TERM 2475 1724201 - 1724253 + F 100 -10.4 -5.44119 | gap 1, opp_overlap 1724218 1724228 ATTTTACTGTAGTTT TTTCAGTGGTTATATGATTTAATAG AAGA TTAA-AAATCATATAATCACTGAAA TTTTTTTGAAATAAA TERM 2476 1724436 - 1724379 - f 100 -16.3 -3.48276 | opp_overlap 1724379 1724384, overlap 1724380 1724384 TTGGCTTTTATAGAA GTAAACATTGTAATTATTATAAGTAAT AAGT ATTAGTTATAATAATTACAATGTTTAA GTTATATATGTGTAA TERM 2477 1724379 - 1724436 + F 100 -16.3 -2.79655 | opp_overlap 1724379 1724380 1724384, overlap 1724384 TTGGCTTTTATAGAA GTAAACATTGTAATTATTATAAGTAAT AAGT ATTAGTTATAATAATTACAATGTTTAA GTTATATATGTGTAA TERM 2478 1724435 - 1724380 - f 100 -19.8 -2.68823 | opp_overlap 1724379 1724384, overlap 1724379 1724384 TGGCTTTTATAGAAG TAAACATTGTAATTATTATAAGTAAT AAGT ATTAGTTATAATAATTACAATGTTTA AGTTATATATGTGTA TERM 2479 1724384 - 1724431 + F 100 -16.2 -3.84394 | opp_overlap 1724384 1724380 1724379, overlap 1724379 TTTTATAGAAGTAAA CATTGTAATTATTATAAGTAAT AAGT ATTAGTTATAATAATTACAATG TTTAAGTTATATATG TERM 2480 1724431 - 1724384 - f 100 -16.2 -4.04174 | opp_overlap 1724379 1724384, overlap 1724380 1724379 TTTTATAGAAGTAAA CATTGTAATTATTATAAGTAAT AAGT ATTAGTTATAATAATTACAATG TTTAAGTTATATATG TERM 2481 1725362 - 1725346 - g 76 -9.5 -3.13788 | opp_overlap 1725342, overlap 1725344 1725337 ACGGAATTTAATATA TCCTTAG AAA CTAAGGA AAAATTATATAAAGA CLK_0968 1724530 - 1725450 + | patatin-like phospholipase family protein TERM 2482 1725621 - 1725660 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1725629, overlap 1725625 1725626 1725628 CCTACTAAAGTTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCATTTAGGAGAAAT TERM 2483 1725626 - 1725656 + F 79 -9.8 -2.75769 | opp_overlap 1725629, overlap 1725625 1725621 1725628 TAAAGTTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCATTTAGGAG TERM 2484 1725653 - 1725629 - f 90 -10.1 -3.71552 | opp_overlap 1725628 1725626 1725625 1725621 AGTTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCATTTAG CLK_0969 1725851 - 1726006 + | hypothetical protein CLK_0970 1726297 - 1727349 + | putative methylcobalamin:coenzyme M methyltransferase CLK_0971 1727397 - 1728794 + | Na+/H+ antiporter family protein TERM 2485 1728841 - 1728806 - f 73 -7.7 -3.70478 | opp_overlap 1728803 ATAAATTGATTTAAA GGACAAACTCATGAA TAAATT TTTATGTGTTTGTCC TCATACTCTTATTTT TERM 2486 1729180 - 1729168 - g 78 -9.1 -3.34344 | GTATTTGTGAAGTAA TGGGC GAT GCCCA AATAGAACTAATAGA TERM 2487 1730538 - 1730522 - g 80 -8.7 -3.73072 | AACTTTTGTAGGAAA CTCCTCC ATA GAAGGAG CAAGATTATCTTTAT CLK_0972 1728936 - 1730666 + | iron-sulfur cluster-binding protein TERM 2488 1730829 - 1730819 - g 81 -2.6 -5.80364 | ACTTTAATAAAAAAA TTTT TGG AAAA TGTGAAAGAAGAAAA TERM 2489 1731440 - 1731426 - g 70 -3.6 -5.1356 | overlap 1731430 GTTTAGGAATAAAAA CAAACA AAA TATTTG AGATAAAAGAAATAA TERM 2490 1731440 - 1731430 - g 72 -4 -5.06961 | overlap 1731426 AGGAATAAAAACAAA CAAA ATA TTTG AGATAAAAGAAATAA CLK_0973 1730756 - 1731685 + | CobW/P47K family protein CLK_0974 1731709 - 1732581 + | putative methylcobalamin:coenzyme M methyltransferase mtbC 1732607 - 1733269 + | dimethylamine corrinoid protein CLK_0976 1733349 - 1734371 + | putative methylcobalamin:coenzyme M methyltransferase CLK_0977 1735060 - 1736130 + | putative methylcobalamin:coenzyme M methyltransferase CLK_0978 1736153 - 1737115 + | methionine ABC transporter ATP-binding protein CLK_0979 1737084 - 1737773 + | methionine ABC transporter permease TERM 2491 1737833 - 1737799 - f 90 -6 -5.86965 | opp_overlap 1737807 ATCTATTAAAAAAAA TTTAAAGCTATAGTTA ACT TAACTATATTTTTAAA TAAATATATACATAG TERM 2492 1737807 - 1737825 + F 83 -7.6 -4.67755 | opp_overlap 1737799 AAAAAAATTTAAAGC TATAGTTA ACT TAACTATA TTTTTAAATAAATAT CLK_0980 1737904 - 1738722 + | NLPA family lipoprotein TERM 2493 1738757 - 1738809 + T 73 -4.6 -5.11063 | gap 2, opp_overlap 1738768, overlap 1738765 1738768 TCACAATTCCTATTG TTAAATACAAAGATACCTCTAAACTG TTA TAGTTTGGAGGTATCTTA-T-TTTAG TTTTTATTCAATCCT TERM 2494 1738765 - 1738803 + T 100 -13.4 -4.86293 | opp_overlap 1738768, overlap 1738757 1738768 CCTATTGTTAAATAC AAAGATACCTCTAAACTG TTA TAGTTTGGAGGTATCTTA TTTTAGTTTTTATTC TERM 2495 1738768 - 1738800 + T 100 -15.1 -4.47007 | opp_overlap 1738768, overlap 1738765 1738757 ATTGTTAAATACAAA GATACCTCTAAACTG TTA TAGTTTGGAGGTATC TTATTTTAGTTTTTA TERM 2496 1738800 - 1738768 - T 100 -12.2 -4.33258 | opp_overlap 1738765 1738757 1738768 ATTGTTAAATACAAA GATACCTCTAAACT GTTAT AGTTTGGAGGTATC TTATTTTAGTTTTTA CLK_0981 1739382 - 1738813 - | MORN repeat-containing protein TERM 2497 1739721 - 1739743 + H 84 -9.4 -3.8046 | opp_overlap 1739721, overlap 1739713 ATTCAAATTATACAA TTATATAAAG TAT CTTTATATAA TTTAAGATTTTTGCA TERM 2498 1739743 - 1739721 - H 83 -9.4 -3.65112 | opp_overlap 1739713 1739721 ATTCAAATTATACAA TTATATAAAG TAT CTTTATATAA TTTAAGATTTTTGCA CLK_0982 1739973 - 1740992 + | oxidoreductase, FAD/FMN-binding TERM 2499 1741005 - 1741033 + F 75 -5.4 -5.05113 | opp_overlap 1741005 TAAAATAAATATAAG GATGGAGAATGT AAGTA AAATTCTTCATC TTTTATTTATGTAAA asnA 1741320 - 1742342 + | aspartate--ammonia ligase CLK_0984 1744016 - 1742451 - | oxidoreductase, FAD dependent TERM 2500 1743200 - 1743210 + g 70 -5.4 -4.56636 | opp_overlap 1743200, overlap 1743206 CATTTATAAACATAC CTTC AGG GAAG TTTTCCTTAGTTTTT CLK_0985 1744376 - 1746235 + | DNA topoisomerase CLK_0986 1746262 - 1748175 + | MutS domain-containing protein TERM 2501 1748227 - 1748282 + F 100 -9.4 -5.29782 | opp_overlap 1748201 1748236, overlap 1748236 TAGATTTAATCTTAA TATAGAAAATACACTTCATAAGTTTA GTAA TATGCTTATGAAGTGTATTTCTTATC TTTTTTATAAATATA TERM 2502 1748273 - 1748236 - f 100 -10.1 -4.67943 | opp_overlap 1748227 1748236 TCTTAATATAGAAAA TACACTTCATAAGTTTA GTAA TATGCTTATGAAGTGTA TTTCTTATCTTTTTT TERM 2503 1748236 - 1748273 + F 100 -12.3 -4.62712 | opp_overlap 1748236, overlap 1748227 TCTTAATATAGAAAA TACACTTCATAAGTTTA GTAA TATGCTTATGAAGTGTA TTTCTTATCTTTTTT CLK_0987 1748492 - 1749628 + | aldo/keto reductase family oxidoreductase TERM 2504 1749620 - 1749655 + T 100 -19.4 -4.66388 | opp_overlap 1749616, overlap 1749609 GTAGTTAAAACTTTT GAACCTTAACAAATTG CTTG CAATTTGTTAAGGTTC TTTCTTTGTAATTTT CLK_0988 1750177 - 1749686 - | hypothetical protein TERM 2505 1750370 - 1750355 - H 73 -7.6 -3.68677 | overlap 1750353 AATTGAAAAAATATA TTGACC GTAT GGTCAA CGGGTGATAATATAT CLK_0989 1750414 - 1751112 + | peptide ABC transporter ATP-binding protein TERM 2506 1751654 - 1751632 - g 100 -9.2 -5.47218 | opp_overlap 1751622, overlap 1751634 TGGGATGCAAAAAAA TTTGGCATAG CTT CTATGCCAGA GGAAAATATGAAAAG TERM 2507 1751652 - 1751634 - g 90 -11.8 -2.91842 | opp_overlap 1751622, overlap 1751632 GGATGCAAAAAAATT TGGCATAG CTT CTATGCCA GAGGAAAATATGAAA TERM 2508 1753099 - 1753085 - g 72 -8.6 -3.00923 | opp_overlap 1753085, overlap 1753087 CCCTAATACTAGATA CAGGAA AAA TTCCTG TTATAATAAGTTATC TERM 2509 1753085 - 1753099 + G 76 -8.6 -3.45033 | opp_overlap 1753085 1753087 CCCTAATACTAGATA CAGGAA AAA TTCCTG TTATAATAAGTTATC CLK_0990 1751113 - 1753323 + | efflux ABC transporter, permease protein CLK_0991 1753335 - 1753958 + | TetR family transcriptional regulator TERM 2510 1754193 - 1754217 + F 95 -10.3 -3.90588 | opp_overlap 1754190 1754197 AAAAACAAATAGTTA TAGATAAAATT ATA AATTTTATCTA TTTGATTAGAAAATG CLK_0992 1754320 - 1754871 + | hypothetical protein TERM 2511 1755905 - 1755931 + G 71 -9 -2.73124 | opp_overlap 1755893 1755905 1755913, overlap 1755904 1755913 CAATATATTTAAATA TAAAAAAGTGTA AGA TACATTTTTTTA GTTTCGAAGATGAAA TERM 2512 1755913 - 1755923 + G 88 -4 -5.72207 | opp_overlap 1755913 1755905, overlap 1755905 1755904 TTAAATATAAAAAAG TGTA AGA TACA TTTTTTTAGTTTCGA CLK_0993 1754884 - 1755981 + | carbohydrate ABC transporter ATP-binding protein CLK_0994 1755974 - 1756867 + | carbohydrate ABC transporter permease CLK_0995 1756903 - 1757727 + | carbohydrate ABC transporter permease CLK_0996 1757773 - 1759134 + | carbohydrate ABC transporter periplasmic-binding protein ldh 1760314 - 1759358 - | L-lactate dehydrogenase CLK_0998 1760844 - 1761554 + | GntR family transcriptional regulator TERM 2513 1761556 - 1761576 + T 75 -5.5 -5.0925 | AAATCACTACTTAAA GTACTATGT ATT ATATAGTGC TTTTTCATTTTAAAG CLK_0999 1762295 - 1761807 - | redox family protein TERM 2514 1763099 - 1763115 + G 79 -7.3 -4.44667 | opp_overlap 1763099, overlap 1763100 CCAACTATCGCAATA TTTGCAG CAC CTGCAAG TTTATTATTAGCAGG TERM 2515 1763100 - 1763114 + G 74 -8.6 -3.26318 | opp_overlap 1763099, overlap 1763099 CAACTATCGCAATAT TTGCAG CAC CTGCAA GTTTATTATTAGCAG CLK_1000 1762529 - 1763476 + | C4-dicarboxylate transporter/malic acid transport protein CLK_1001 1763709 - 1763548 - | hypothetical protein TERM 2516 1763680 - 1763622 - G 74 -6.3 -4.41348 | gap 1, opp_overlap 1763630 1763631, overlap 1763623 1763628 1763629 TTGGTGCGAAAGAAA GCATAACTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGTTTTTTG- CTATCTTTTTTATAA TERM 2517 1763680 - 1763623 - G 100 -12.3 -3.24488 | opp_overlap 1763630 1763631, overlap 1763622 1763628 1763629 TGGTGCGAAAGAAAG CATAACTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGTTTTTTG CTATCTTTTTTATAA TERM 2518 1763673 - 1763628 - G 95 -11.6 -3.72242 | gap 2, opp_overlap 1763630 1763631, overlap 1763622 1763623 1763629 CGAAAGAAAGCATAA CTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAA--G TTTTTTGCTATCTTT TERM 2519 1763674 - 1763629 - G 100 -14.3 -2.82261 | opp_overlap 1763630 1763631, overlap 1763628 1763622 1763623 GAAAGAAAGCATAAC TTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGT TTTTTGCTATCTTTT TERM 2520 1763630 - 1763673 + g 100 -19.3 -5.28755 | opp_overlap 1763628 1763629 1763622 1763623, overlap 1763631 AAAGAAAGCATAACT TTTACCCATTCCCTTTTAA ATCCTC TTAAAAGGGAATGGGTAAG TTTTTTGCTATCTTT TERM 2521 1763631 - 1763672 + g 100 -20.6 -3.74813 | opp_overlap 1763628 1763629 1763622 1763623, overlap 1763630 AAGAAAGCATAACTT TTACCCATTCCCTTTTAA ATCCTC TTAAAAGGGAATGGGTAA GTTTTTTGCTATCTT TERM 2522 1763714 - 1763743 + H 89 -9.5 -4.33274 | opp_overlap 1763712 1763710 1763707 1763714 AAAAATAACAATAGA TATCTTAGGAAAA AATT TTATCCTAAGATA TTTTGATGATGTCAA TERM 2523 1763743 - 1763714 - H 82 -9.5 -3.42301 | opp_overlap 1763714, overlap 1763712 1763710 1763707 AAAAATAACAATAGA TATCTTAGGAAAA AATT TTATCCTAAGATA TTTTGATGATGTCAA TERM 2524 1763820 - 1763833 + H 73 -2.5 -5.63504 | TAAAACCTTGCTAAT TTTAT TTCC ATAAA TTTTTTTGTACACTT TERM 2525 1765883 - 1765863 - g 70 -8.3 -3.06815 | AGTGCTGTTAATATA TCCATCTCC TTT GGATATGGA ACTAAGAAGAAAGAA CLK_1002 1764339 - 1766537 + | putative sensory box-containing diguanylate cyclase CLK_1003 1766645 - 1766992 + | hypothetical protein TERM 2526 1767083 - 1767120 + F 70 -3.6 -5.1971 | ACTAAGCAGATAAAA GCTAGAAAATTAGAGA TATAAC TATTTAAATTTCTAGC TTTTTAATTTTTAAT TERM 2527 1767184 - 1767170 - f 71 -5.8 -4.70887 | opp_overlap 1767170 TGAGCAATAAATAAA TGTATT CAT AATACA TTTCAGTAGTATTGT TERM 2528 1768265 - 1768246 - g 78 -6.4 -4.82901 | TCTTTTGTAGAAAAA GCAGAGCT TACA AGATCTGC AAATAGTATAGGTCT CLK_1004 1767358 - 1769430 + | methyl-accepting chemotaxis protein CLK_1005 1769700 - 1769942 + | ankyrin repeat-containing protein CLK_1006 1771559 - 1770060 - | extracellular exochitinase CLK_1007 1771713 - 1771564 - | hypothetical protein TERM 2529 1771769 - 1771811 + H 80 -10.1 -2.79116 | opp_overlap 1771760 1771780, overlap 1771780 TATAGACCTTCTTAC TTAAGCAAAAAGAACCCTA ATAAA TAGGGTTCTTTTTGTATGG ATCTTTATATATAGA TERM 2530 1771800 - 1771780 - H 100 -9.8 -4.88407 | opp_overlap 1771769 1771780, overlap 1771760 TTACTTAAGCAAAAA GAACCCTA ATAAA TAGGGTTC TTTTTGTATGGATCT TERM 2531 1771780 - 1771800 + H 100 -9.8 -4.99638 | opp_overlap 1771760 1771780, overlap 1771769 TTACTTAAGCAAAAA GAACCCTA ATAAA TAGGGTTC TTTTTGTATGGATCT CLK_1008 1771996 - 1772538 + | hypothetical protein CLK_1009 1773039 - 1772686 - | putative transcriptional regulator CLK_1010 1773169 - 1773291 + | putative nitroreductase CLK_1011 1773442 - 1773807 + | glyoxalase family protein ogt 1773836 - 1774306 + | methylated-DNA-[protein]-cysteine S-methyltransferase TERM 2532 1774540 - 1774551 + G 71 -5.8 -4.49311 | AGAAGTTCATTAGCA GGGT TTTT ACCC TTTTATAATAGTAAT CLK_1013 1774363 - 1775550 + | AraC family transcriptional regulator TERM 2533 1775628 - 1775596 - f 73 -5.7 -4.80167 | opp_overlap 1775597, overlap 1775591 1775590 1775597 CACTAAAAAGTAAAA GCAGTATGATTAATT TGT AGTCAATCATACTGT TTTTTATTTTAAGAT TERM 2534 1775627 - 1775597 - f 82 -9.2 -3.46474 | opp_overlap 1775597, overlap 1775596 1775591 1775590 ACTAAAAAGTAAAAG CAGTATGATTAATT TGT AGTCAATCATACTG TTTTTTATTTTAAGA TERM 2535 1775597 - 1775627 + F 100 -9.2 -5.79595 | opp_overlap 1775597 1775596 1775591 1775590 ACTAAAAAGTAAAAG CAGTATGATTAATT TGT AGTCAATCATACTG TTTTTTATTTTAAGA CLK_1014 1775715 - 1776923 + | hypothetical protein CLK_1015 1776948 - 1777778 + | hypothetical protein CLK_1016 1777823 - 1778236 + | putative cupin TERM 2536 1778289 - 1778339 + F 100 -16.6 -2.84098 | opp_overlap 1778295, overlap 1778295 TTTATAACATGATTT TTAAAACACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTGTTTTTA TAATTAATTAAGGCC TERM 2537 1778295 - 1778333 + F 100 -15.6 -5.00765 | opp_overlap 1778295, overlap 1778289 ACATGATTTTTAAAA CACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTG TTTTTATAATTAATT TERM 2538 1778333 - 1778295 - f 100 -15.6 -4.12456 | opp_overlap 1778289 1778295 ACATGATTTTTAAAA CACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTG TTTTTATAATTAATT CLK_1017 1778633 - 1779745 + | putative DNA-binding protein TERM 2539 1780001 - 1780028 + F 100 -8.5 -5.72616 | opp_overlap 1780001 1780002 AGGAAGGATTAAATA CCTGTGGGACA GTAAAA TGTTCTACAGG TTTTTTTATATAGAT TERM 2540 1780239 - 1780227 - g 81 -4.9 -5.44119 | TGTAGCTGAAAAAAA GAAAA GTT TTTTC TACAAAATTTTGAGT TERM 2541 1780832 - 1780846 + G 74 -7.2 -3.99559 | overlap 1780830 TAAAACTATGTGCAG GAATTG CAG CAATTC TATTTATTTTCGTTG TERM 2542 1780970 - 1780984 + G 75 -7.2 -4.06182 | TACCAGAAGAATTCC CAGTTA TTC TAACTG TATTTTTATCAATGG CLK_1018 1780126 - 1782660 + | hypothetical protein CLK_1019 1782717 - 1783586 + | cation efflux family protein TERM 2543 1783724 - 1783743 + F 100 -8.6 -5.86609 | opp_overlap 1783722 1783723, overlap 1783722 ATAAAAATATGAATT GTGGTACA ATTA TGTGCCAC TTTTTATTTTTTTAA TERM 2544 1783901 - 1783923 + G 71 -7.8 -3.41767 | opp_overlap 1783901 1783900, overlap 1783905 TGTAAAGGAAAAGAC TCATCCAAAA GGA TTTTGGTTGA TATGTTTTACAATCT CLK_1020 1783875 - 1785278 + | amino acid/peptide transporter TERM 2545 1785318 - 1785306 - f 70 -6.3 -4.36586 | opp_overlap 1785305, overlap 1785298 ATACAAGTAAAAGAA CTACT TTT AGTAG ATATATGAGTTTTTG CLK_1021 1785714 - 1786073 + | putative iron-dependent repressor TERM 2546 1786424 - 1786411 - g 72 -6.7 -4.10007 | opp_overlap 1786410 AGAATTCCTTTAAAA GATGC AAGT GCATC AATTTTAGCTCAAAT CLK_1022 1786171 - 1786578 + | hypothetical protein CLK_1023 1786961 - 1787815 + | HDIG domain-containing protein CLK_1024 1787925 - 1788110 + | hypothetical protein TERM 2547 1788202 - 1788167 - T 73 -7.8 -3.827 | opp_overlap 1788162 1788167, overlap 1788162 AATAAGTAATTTAAA TAGTCCTAGGAA GAAAAATTATAA TTCCTAGGACTA TTTTATATTCTAAAG TERM 2548 1788167 - 1788202 + T 86 -7.8 -4.73682 | opp_overlap 1788167 1788162, overlap 1788162 AATAAGTAATTTAAA TAGTCCTAGGAA GAAAAATTATAA TTCCTAGGACTA TTTTATATTCTAAAG CLK_1025 1790928 - 1788292 - | cation-transporting ATPase, P-type TERM 2549 1789648 - 1789668 + g 71 -4.8 -4.80455 | overlap 1789649 GTATTGTCCATCAAT TTTATGAG AAGTA CTCATAAG TTTTCTATTTGAATC TERM 2550 1789776 - 1789787 + g 89 -4.4 -5.94214 | CAAAAGCTATTTCAG TAGG ATCA CCTA TTTTTTTATTCTGTT TERM 2551 1791176 - 1791130 - H 100 -12.1 -5.68438 | opp_overlap 1791132, overlap 1791123 CTATCAAATAAAAAA GACTTTTAATATAATTCCT TTATATTCT AAGAATTATATTAAAAGTC TTGCAACCAAACTTT TERM 2552 1791538 - 1791511 - H 86 -9.4 -3.96481 | opp_overlap 1791517 1791536, overlap 1791528 AAAAAATAATTGAAA TTAATATGACAC ACAG ATGTCATATTAA CAATGTTATGATTAG CLK_1026 1791651 - 1792013 + | glyoxalase family protein TERM 2553 1792035 - 1792065 + T 100 -12.1 -4.41137 | opp_overlap 1792035 TTTATTCGTAATTAA GAGCATTTAATCT TATAT AGATTAAGTGCTC TTTGTTATAATTATA TERM 2554 1792065 - 1792035 - T 87 -9.9 -3.34895 | opp_overlap 1792035 TTTATTCGTAATTAA GAGCATTTAATCT TATAT AGATTAAGTGCTC TTTGTTATAATTATA cat 1792827 - 1792192 - | chloramphenicol acetyltransferase CLK_1028 1792945 - 1793640 + | cyclic nucleotide-binding domain-containing protein TERM 2555 1793691 - 1793706 + T 73 -3.2 -5.60993 | opp_overlap 1793691 AATCAACCTTTAAAA TCAACC GAAA GGCTGA TTTTTTTATGAGAAA TERM 2556 1793793 - 1793767 - T 76 -8.2 -3.66999 | opp_overlap 1793769, overlap 1793769 AGGGAGTGATGGAAA TATTATTTGAAG GAT CTTCAAATAATT AGATTGGAGAAAGAC TERM 2557 1793769 - 1793791 + T 87 -10.8 -3.17075 | opp_overlap 1793767 1793769 GGAGTGATGGAAATA TTATTTGAAG GAT CTTCAAATAA TTAGATTGGAGAAAG TERM 2558 1793791 - 1793769 - T 90 -10.8 -3.41569 | opp_overlap 1793769, overlap 1793767 GGAGTGATGGAAATA TTATTTGAAG GAT CTTCAAATAA TTAGATTGGAGAAAG TERM 2559 1793958 - 1793908 - T 81 -7.8 -4.50487 | opp_overlap 1793910 1793922 1793948, overlap 1793905 1793913 1793922 AGAAATATAAAAGAA TTAAAGCCAGAAAATATTAATACT TAA AGTAATAATATTTTCTGGCAACTA GATTAGTGAAATCAT TERM 2560 1793953 - 1793913 - T 100 -18.7 -4.23244 | opp_overlap 1793910 1793922 1793948, overlap 1793908 1793905 1793922 TATAAAAGAATTAAA GCCAGAAAATATTAATACT TAA AGTAATAATATTTTCTGGC AACTAGATTAGTGAA CLK_1029 1794952 - 1794230 - | transcription activator effector binding domain-containing protein CLK_1030 1795954 - 1795010 - | hypothetical protein TERM 2561 1796177 - 1796192 + H 88 -4.7 -5.84381 | opp_overlap 1796177 AAAACTAGGACGTAA CTACC GCCTTA GGTAG TTTTTTTGTTGATGG TERM 2562 1796206 - 1796220 + H 100 -10 -5.72622 | AGTTTTTTTGTTGAT GGGCAT TTA ATGCCC TTTTTTATTTGTAAA TERM 2563 1796224 - 1796249 + H 73 -2.7 -5.64421 | overlap 1796222 1796226 CATTTAATGCCCTTT TTTATTTGTAA AAAT TTACAAATATG TTTTTTATTTGAGGT TERM 2564 1796226 - 1796247 + H 81 -7.5 -4.45696 | overlap 1796222 1796224 TTTAATGCCCTTTTT TATTTGTAA AAAT TTACAAATA TGTTTTTTATTTGAG CLK_1031 1796540 - 1797535 + | putative 2-hydroxyglutaryl-CoA dehydratase subunit hgdC 1797662 - 1798423 + | 2-hydroxyglutaryl-CoA dehydratase component A CLK_1033 1798441 - 1798872 + | putative 6-pyruvoyl tetrahydropterin synthase CLK_1034 1798874 - 1799539 + | radical SAM domain-containing protein folE 1799543 - 1800133 + | GTP cyclohydrolase I CLK_1036 1800317 - 1800976 + | exsB protein CLK_1037 1801080 - 1802024 + | methyl-accepting chemotaxis protein CLK_1038 1802193 - 1802945 + | hypothetical protein TERM 2565 1803027 - 1803050 + F 90 -7.5 -5.09225 | opp_overlap 1803029 AAAAGGAATTTATAG GACTAAGTC AACACA GGCTTAGTC TTTTTTAGATAGAGT deoC 1803269 - 1803907 + | deoxyribose-phosphate aldolase TERM 2566 1803967 - 1803928 - f 91 -10.3 -3.77486 | opp_overlap 1803932 AAAGATAATAGATAA TAGATCGTTAATCTGTT TTTTAT AACAGATTAGCAATCTA TAGGATAAAAAATTA TERM 2567 1804039 - 1804026 - f 70 -3.9 -5.21709 | opp_overlap 1804026 GTTTATATTAAAAAA CAATT ATTA AATTG ATATTTTGTAGAAGT rbsK 1804259 - 1805161 + | ribokinase TERM 2568 1805215 - 1805236 + F 86 -3.7 -6.09196 | TTTAAAAAATAAAGA CTCTTATAC ATTA GTGTAGGGG TTTTTTTGTTTTGAG TERM 2569 1805710 - 1805675 - g 100 -12 -3.95324 | TAGTCGGAATAACAA TCGGATCTATTGCAGC AGTA GCCTCAATAGATCCAA AAATTAATATGTCTC CLK_1041 1805545 - 1806228 + | YdfR family membrane protein CLK_1042 1806346 - 1807041 + | hypothetical protein CLK_1043 1807055 - 1807276 + | hypothetical protein CLK_1044 1807294 - 1807821 + | hypothetical protein TERM 2570 1807799 - 1807847 + T 100 -16.7 -5.0133 | opp_overlap 1807801 1807806 1807809 TTATAGGTACGCTAA TATTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAATA TTTTTTAGCAGAATC TERM 2571 1807845 - 1807801 - T 100 -14.9 -3.06671 | opp_overlap 1807799, overlap 1807806 1807809 ATAGGTACGCTAATA TTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAA TATTTTTTAGCAGAA TERM 2572 1807840 - 1807806 - T 95 -10.4 -3.93038 | opp_overlap 1807799, overlap 1807801 1807809 TACGCTAATATTAAA GAAGTTTATATTAT AAAATAG ATAATATAAACTTC TTTAATATTTTTTAG CLK_1045 1808742 - 1807852 - | LysR family transcriptional regulator CLK_1046 1809005 - 1810255 + | sodium:alanine symporter family protein TERM 2573 1811233 - 1811213 - g 72 -4.8 -4.87665 | overlap 1811224 CCCTAGCTAGAAAAA CTACTAAA CTACC TTTAGCAG GACCTGCTCAAAAAG CLK_1047 1810336 - 1812036 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 2574 1812741 - 1812753 + G 71 -4.9 -4.72846 | overlap 1812744 TGGAATAAGAGTGTG TATCT GCC AGATA TTTTTGGATATATGG CLK_1048 1812189 - 1813445 + | hypothetical protein TERM 2575 1813528 - 1813567 + F 100 -10.4 -4.67038 | gap 1, opp_overlap 1813528 ATATTATAAAAGAAA TCACTAAAAATCGACTATA AAC TA-AGTTGGTTTTTAGTGA TTTTAATTTTAGAAA TERM 2576 1813567 - 1813528 - f 76 -6 -4.81357 | gap 1, opp_overlap 1813528 ATATTATAAAAGAAA TCACTAAAAATCGACTATA AAC TA-AGTTGGTTTTTAGTGA TTTTAATTTTAGAAA CLK_1049 1813752 - 1814459 + | antibiotic ABC transporter, ATP-binding protein CLK_1050 1814462 - 1815193 + | antibiotic ABC transporter, permease protein CLK_1051 1815196 - 1815939 + | antibiotic ABC transporter, permease protein CLK_1052 1816056 - 1816715 + | putative antibiotic transporter response regulator CLK_1053 1816706 - 1818085 + | putative antibiotic transporter sensor protein TERM 2577 1818200 - 1818153 - f 70 -4.4 -5.00846 | opp_overlap 1818157, overlap 1818157 TAAATATTATAAAAA TAAATCACTAAAAATTAGTTAG ATTT CTGATTGATTTTTAGTGATTTT AATTGGGAAAATAAT TERM 2578 1818157 - 1818196 + F 100 -11.8 -4.4078 | opp_overlap 1818153 1818157 TATTATAAAAATAAA TCACTAAAAATTAGTTAG ATTT CTGATTGATTTTTAGTGA TTTTAATTGGGAAAA TERM 2579 1818196 - 1818157 - f 72 -5.2 -4.98911 | opp_overlap 1818157, overlap 1818153 TATTATAAAAATAAA TCACTAAAAATTAGTTAG ATTT CTGATTGATTTTTAGTGA TTTTAATTGGGAAAA TERM 2580 1818405 - 1818392 - f 81 -5.3 -5.30448 | opp_overlap 1818392 AAACAAACAGAAAAA TGCAT AATT ATGCA TTTGTATACAATTAG arcA 1818649 - 1819875 + | arginine deiminase TERM 2581 1819879 - 1819936 + F 90 -9.8 -3.74251 | gap 1, opp_overlap 1819881 1819912, overlap 1819881 AATTTAAGATAACCC AATTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAATC TTTCATGAAAATCTA TERM 2582 1819934 - 1819881 - f 93 -12.4 -3.29147 | gap 1, opp_overlap 1819881 1819879, overlap 1819912 TTTAAGATAACCCAA TTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAA TCTTTCATGAAAATC TERM 2583 1819881 - 1819934 + F 95 -12.4 -3.45324 | gap 1, opp_overlap 1819881 1819912, overlap 1819879 TTTAAGATAACCCAA TTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAA TCTTTCATGAAAATC TERM 2584 1821207 - 1821225 + G 72 -9 -2.99471 | opp_overlap 1821219 TAGCAATCTTAGCTT CCATATAT ACA ATATATGG TATATATGCAGGTGG arcD 1820000 - 1821418 + | arginine/ornithine antiporter TERM 2585 1821519 - 1821575 + T 77 -4.7 -5.4505 | opp_overlap 1821510 1821519, overlap 1821510 AAACTATGATTAAAA TCATCTTTTTAAGTAAATCCCATTAAT AAA ATGGTTGAAATTTACTTAAGAGGATGA TTTTTTATTACAAAG TERM 2586 1821639 - 1821603 - T 72 -6 -4.55004 | opp_overlap 1821611, overlap 1821611 AAGAGAAAATATAAA TAATAAAAGGATAGCC TTAGT GGTTATCCTTTTTCTA CATATACATTACGTA TERM 2587 1821631 - 1821611 - T 75 -5.4 -5.06472 | opp_overlap 1821611, overlap 1821603 ATATAAATAATAAAA GGATAGCC TTAGT GGTTATCC TTTTTCTACATATAC TERM 2588 1821611 - 1821631 + T 86 -7.6 -4.89852 | opp_overlap 1821611 1821603 ATATAAATAATAAAA GGATAGCC TTAGT GGTTATCC TTTTTCTACATATAC CLK_1056 1822287 - 1821637 - | hemolysin III CLK_1057 1822658 - 1823266 + | hypothetical protein TERM 2589 1823332 - 1823293 - f 100 -12.6 -3.88899 | gap 1, opp_overlap 1823301, overlap 1823296 1823301 AAAAAGATTAAAAGA TAAG-AAAAGTCAATGAAT ATT ATTCATTGACTTTTGCTCA TTTAATAACCATATG TERM 2590 1823328 - 1823296 - f 100 -12.3 -4.01992 | opp_overlap 1823301, overlap 1823293 1823301 AAGATTAAAAGATAA GAAAAGTCAATGAAT ATT ATTCATTGACTTTTG CTCATTTAATAACCA TERM 2591 1823301 - 1823323 + F 100 -12.2 -4.39989 | opp_overlap 1823301 1823296 1823293 TAAAAGATAAGAAAA GTCAATGAAT ATT ATTCATTGAC TTTTGCTCATTTAAT TERM 2592 1823323 - 1823301 - f 100 -12.2 -4.98917 | opp_overlap 1823301, overlap 1823296 1823293 TAAAAGATAAGAAAA GTCAATGAAT ATT ATTCATTGAC TTTTGCTCATTTAAT CLK_1058 1823605 - 1826898 + | SNF2 family helicase CLK_1059 1827088 - 1827903 + | RelA/SpoT domain-containing protein TERM 2593 1828150 - 1828124 - f 72 -8.8 -2.57211 | overlap 1828123 1828126 ACCTGGCTTCACAAC TACCTCCTCACA TCA TGTGAGGAATTA CAAAAATTTTTAATT CLK_1060 1828328 - 1828783 + | hypothetical protein TERM 2594 1828940 - 1828917 - f 74 -8.4 -3.32514 | opp_overlap 1828909, overlap 1828909 CATACAATAATTTAA TTAGTTTTAT AATA ATAAAACTAA AAATAACTGAAAGTT CLK_1061 1829169 - 1830158 + | AraC family transcriptional regulator TERM 2595 1830179 - 1830203 + F 82 -2.2 -6.17033 | AATAAGCTATAAAAA TGTTCTAAAG TGATT TTTTGGAGCA TTTTTTATTTTTTTT TERM 2596 1830747 - 1830763 + F 79 -8.1 -4.09627 | GCAGCCATTGTAACT CCTATAA TAA TTATAGG TTATCTTTTATCTTT TERM 2597 1831092 - 1831116 + F 77 -6.6 -4.56775 | opp_overlap 1831097, overlap 1831094 TTCAGGACTTTTATT TATAATTCCT ATTGG AGGAATTATG TTTTTAAAAGGAAGT TERM 2598 1831094 - 1831114 + F 71 -7 -3.90048 | opp_overlap 1831097, overlap 1831092 CAGGACTTTTATTTA TAATTCCT ATTGG AGGAATTA TGTTTTTAAAAGGAA CLK_1064 1832069 - 1833793 + | ABC transporter ATP-binding/permease protein TERM 2599 1833832 - 1833863 + F 93 -7.5 -5.2166 | opp_overlap 1833832, overlap 1833837 AAACAAGGAGAAGAA TAAAAGGATAGTC TTAACT GGCTATTCTTTTA TTTTTTAAATTATTA TERM 2600 1833947 - 1833921 - f 72 -4.7 -4.98468 | ATAATAAAAAAATAA TTATATAAATT TTAGC AATTCATATAA TCGTCAGTAGCTTAA TERM 2601 1834930 - 1834913 - g 71 -5.5 -4.3902 | ATTAGAAAAAGTAAA GCCAACA GCAG TGGTGGC AATGGATGACTTGTT CLK_1065 1834185 - 1835186 + | LacI family transcription regulator TERM 2602 1835385 - 1835418 + F 75 -9.3 -2.5369 | opp_overlap 1835385, overlap 1835384 1835383 1835387 ATCAAATAAAATTAA TATTATTTAATAAAT AAAA GTTTATTAAATAATA GATTTTATAAGAATT TERM 2603 1835418 - 1835385 - f 78 -8.6 -3.89235 | opp_overlap 1835385 1835384 1835383 1835387 ATCAAATAAAATTAA TATTATTTAATAAA TAAAAG TTTATTAAATAATA GATTTTATAAGAATT TERM 2604 1836368 - 1836358 - g 76 -5.4 -5.093 | TGTAAAATAACAAAA GCAA AGC TTGC AGGAAAAGCAGGGGT CLK_1066 1835479 - 1836426 + | putative glucokinase TERM 2605 1836547 - 1836512 - f 82 -9.2 -3.4082 | opp_overlap 1836507 1836518, overlap 1836505 1836504 1836518 GAAATAAGTTTAGAA CTATAAGTATTAGTTC TAAA GGACTAGTACTTATAG TAGAATTAATTATAG TERM 2606 1837337 - 1837313 - g 78 -9.5 -3.28966 | opp_overlap 1837313, overlap 1837311 1837309 1837318 GGATTAAAAGACATA CATAATCCAAA AAA TTTAGATTATG TTCCTTCTTTTGAAA TERM 2607 1837700 - 1837690 - g 74 -5.4 -4.95758 | overlap 1837691 AGGAGATGATAAAAA CTTC TGG GAAG AAAGTTCAAAAGCCT CLK_1067 1836674 - 1838338 + | glycosy hydrolase family protein CLK_1068 1838380 - 1840038 + | PTS system, glucose/glucoside family, IIBC component CLK_1069 1840042 - 1840833 + | endonuclease/exonuclease/phosphatase family protein TERM 2608 1840842 - 1840898 + F 95 -12.6 -3.71792 | opp_overlap 1840843 1840845, overlap 1840844 1840845 AATTTAAAAAAAGTA AGAGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCATA TTAATTTTCAGTTAG TERM 2609 1840897 - 1840843 - f 100 -11.7 -4.04789 | opp_overlap 1840842 1840844 1840845, overlap 1840845 ATTTAAAAAAAGTAA GAGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCAT ATTAATTTTCAGTTA TERM 2610 1840844 - 1840896 + F 100 -17.4 -3.43033 | opp_overlap 1840843 1840845, overlap 1840842 1840845 TTTAAAAAAAGTAAG AGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCA TATTAATTTTCAGTT TERM 2611 1840845 - 1840895 + F 100 -20.9 -2.64735 | opp_overlap 1840843 1840845, overlap 1840844 1840842 TTAAAAAAAGTAAGA GGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCC ATATTAATTTTCAGT TERM 2612 1840895 - 1840845 - f 100 -18.7 -3.59495 | opp_overlap 1840845 1840844 1840842, overlap 1840843 TTAAAAAAAGTAAGA GGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCC ATATTAATTTTCAGT TERM 2613 1841371 - 1841353 - g 74 -3.2 -5.46657 | opp_overlap 1841353, overlap 1841354 GATTCTAATAAAAAA TTGAAAAT AAA ATTTTCAG ATTTAAGTTTTATAA CLK_1070 1841059 - 1841682 + | hypothetical protein TERM 2614 1841794 - 1841839 + T 93 -10.1 -3.84825 | gap 1, opp_overlap 1841788 1841796, overlap 1841795 1841798 CAAACATAAGGCAAT AACACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTGAG TTTGATATAGATAAC TERM 2615 1841795 - 1841838 + T 93 -13.6 -2.90573 | gap 1, opp_overlap 1841788 1841796, overlap 1841794 1841798 AAACATAAGGCAATA ACACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTGA GTTTGATATAGATAA TERM 2616 1841837 - 1841796 - T 100 -17.1 -3.7744 | gap 1, opp_overlap 1841795 1841794 1841798, overlap 1841788 AACATAAGGCAATAA CACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTG AGTTTGATATAGATA TERM 2617 1841798 - 1841835 + T 100 -13.9 -2.69601 | gap 1, opp_overlap 1841796 1841788, overlap 1841795 1841794 CATAAGGCAATAACA CTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAG TGAGTTTGATATAGA CLK_1071 1842305 - 1841970 - | hypothetical protein TERM 2618 1842598 - 1842585 - H 86 -3.9 -6.02919 | TTATAAATAAAAAAA CATAA ACTA TTATG AAGGGATAAATTATA TERM 2619 1842863 - 1842840 - g 81 -8.4 -4.32482 | overlap 1842851 AGGGACAATTTAAAA TTTTTATAGA AGGC TCTATAAAAA TAAGAATATTATTTT CLK_1072 1842632 - 1844128 + | hypothetical protein CLK_1073 1844229 - 1844684 + | hypothetical protein TERM 2620 1844767 - 1844725 - T 100 -17.6 -4.15998 | opp_overlap 1844728 1844733, overlap 1844728 ATTTAAAGTAAATAA TAACTAAATACATAATAATA TAC CATTATTATGTATTTAGTTA TAAAAAAGCATATCT TERM 2621 1844728 - 1844764 + T 100 -14.2 -3.28924 | opp_overlap 1844728 1844725, overlap 1844733 TAAAGTAAATAATAA CTAAATACATAATAAT ATACC ATTATTATGTATTTAG TTATAAAAAAGCATA TERM 2622 1844764 - 1844728 - T 100 -14.9 -4.18294 | opp_overlap 1844728 1844733, overlap 1844725 TAAAGTAAATAATAA CTAAATACATAATAATA TAC CATTATTATGTATTTAG TTATAAAAAAGCATA TERM 2623 1844733 - 1844759 + T 78 -8.3 -3.9941 | opp_overlap 1844728 1844725, overlap 1844728 TAAATAATAACTAAA TACATAATAAT ATACC ATTATTATGTA TTTAGTTATAAAAAA TERM 2624 1844814 - 1844792 - T 100 -12.2 -4.57837 | opp_overlap 1844792 ATATCTTTTCAAAAA CATACCTATT TTC AATAGGTATG TTTTTATTTTGGGGT TERM 2625 1844792 - 1844814 + T 100 -12.2 -5.46706 | opp_overlap 1844792 ATATCTTTTCAAAAA CATACCTATT TTC AATAGGTATG TTTTTATTTTGGGGT CLK_1074 1847142 - 1844980 - | sensor histidine kinase CLK_1075 1847812 - 1847120 - | DNA-binding response regulator TERM 2626 1847969 - 1847955 - H 73 -7.2 -4.08578 | opp_overlap 1847955 AAAGTTAAGTATAAA GAAATG ATC CATTTC TCATTATAAAAAAGT TERM 2627 1848016 - 1848030 + H 89 -4.4 -6.04324 | opp_overlap 1848016 TATCTTTTATATAGA TTTTAT TTA ATAAAA TTTTTTCTTTTTTAG CLK_1076 1848394 - 1849623 + | major facilitator family transporter TERM 2628 1849710 - 1849752 + T 86 -9.5 -3.90328 | gap 1, opp_overlap 1849715 1849718, overlap 1849718 TGGCTTTCTTATAAA TAAAAGAATCCTCTAAGGAT TGAA GTCCT-AGGGGATTTTTTTA TTTATAAGAATTATA TERM 2629 1849728 - 1849718 - T 71 -5.4 -4.58946 | opp_overlap 1849710 1849718, overlap 1849715 TTATAAATAAAAGAA TCCT CTA AGGA TTGAAGTCCTAGGGG TERM 2630 1849718 - 1849744 + T 89 -4.5 -6.02919 | gap 1, opp_overlap 1849718 1849715, overlap 1849710 TTATAAATAAAAGAA TCCTCTAAGGAT TGAA GTCCT-AGGGGA TTTTTTTATTTATAA TERM 2631 1849893 - 1849883 - T 73 -6.8 -4.26351 | CATGAATGTAATAAA GCCA GAA TGGC TAGTAATTTATATTA CLK_1077 1850025 - 1849906 - | hypothetical protein TERM 2632 1850238 - 1850254 + G 73 -9.5 -2.63381 | overlap 1850237 1850236 TTCTTTCTATGAGTG GGAAAAG ATA CTTTTCC ATATTTAAAAGTTTA CLK_1078 1850081 - 1850368 + | hypothetical protein TERM 2633 1850549 - 1850526 - T 89 -9 -4.55544 | gap 1, opp_overlap 1850526 1850525 1850523 AATATATAATGAAAA GGACAGGA-TA TAA TATTCCTGTCC CTATTAATAACTTGT TERM 2634 1850526 - 1850549 + T 72 -9 -2.50338 | gap 1, opp_overlap 1850526, overlap 1850525 1850523 AATATATAATGAAAA GGACAGGATAT AAT AT-TCCTGTCC CTATTAATAACTTGT CLK_1079 1851476 - 1850616 - | HAD family hydrolase CLK_1080 1852252 - 1851485 - | DeoR family transcriptional regulator TERM 2635 1851699 - 1851685 - G 74 -8.6 -3.29144 | TCATTTTTTTCATAA CAGAAG CAT CTTCTG CATGTGCCACAGTTA TERM 2636 1852102 - 1852117 + g 83 -7.6 -4.64657 | overlap 1852116 CACCACCATGAGTTC GAAGGA TTGC TCCTTC TTTTTCAAGATTTAC TERM 2637 1852477 - 1852435 - R 77 -7.2 -4.45168 | opp_overlap 1852437, overlap 1852437 TTCGTAAAATATAAA TAGCCTTACCTAAATAGTTT CAC ACAATATTTAGATAAGGCTT AATTTTTTGTTCTTA TERM 2638 1852437 - 1852475 + r 77 -7.6 -4.05512 | opp_overlap 1852435 1852437 CGTAAAATATAAATA GCCTTACCTAAATAGTTT CAC ACAATATTTAGATAAGGC TTAATTTTTTGTTCT TERM 2639 1852475 - 1852437 - R 90 -9.8 -3.82656 | opp_overlap 1852437, overlap 1852435 CGTAAAATATAAATA GCCTTACCTAAATAGTTT CAC ACAATATTTAGATAAGGC TTAATTTTTTGTTCT CLK_1081 1853246 - 1852515 - | hypothetical protein TERM 2640 1853761 - 1853745 - g 74 -6.7 -4.28018 | overlap 1853754 AATAGCCTATGAAAA TATAAAG GAG CTTTATA AAGCATTAGACAAGC CLK_1082 1853386 - 1853925 + | putative RNA polymerase sigma factor CLK_1083 1854115 - 1854294 + | hypothetical protein TERM 2641 1854382 - 1854336 - T 79 -8.2 -4.12899 | opp_overlap 1854337 1854340 1854362, overlap 1854337 1854340 ATTAGAAGTAAATAA GTGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTAT TTTAAAATATTATTA TERM 2642 1854337 - 1854381 + T 100 -16.1 -4.21314 | opp_overlap 1854336 1854337 1854340, overlap 1854340 1854362 TTAGAAGTAAATAAG TGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTA TTTTAAAATATTATT TERM 2643 1854381 - 1854337 - T 90 -11.7 -3.06655 | opp_overlap 1854337 1854340 1854362, overlap 1854336 1854340 TTAGAAGTAAATAAG TGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTA TTTTAAAATATTATT TERM 2644 1854340 - 1854378 + T 100 -15.6 -4.2142 | opp_overlap 1854340 1854337 1854336, overlap 1854337 1854362 GAAGTAAATAAGTGA GGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCC TTATTTTAAAATATT TERM 2645 1854378 - 1854340 - T 91 -13.4 -2.7363 | opp_overlap 1854337 1854340 1854362, overlap 1854337 1854336 GAAGTAAATAAGTGA GGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCC TTATTTTAAAATATT CLK_1084 1858228 - 1854599 - | collagenase TERM 2646 1857529 - 1857541 + g 74 -6.3 -4.4388 | CATCTGCTTTTAATT TATCC TTT GGATA TTTGTTCATTTCTCT TERM 2647 1858620 - 1858599 - H 70 -7.3 -3.67976 | opp_overlap 1858599 TCTAGGAATTTTAAA CCTAAGGGA AGTA TCCTTTAGG TTTTTTATTTTTTAA TERM 2648 1858599 - 1858620 + H 100 -9.5 -6.04324 | opp_overlap 1858599 TCTAGGAATTTTAAA CCTAAGGGA AGTA TCCTTTAGG TTTTTTATTTTTTAA metF 1858702 - 1859589 + | 5,10-methylenetetrahydrofolate reductase TERM 2649 1859720 - 1859702 - f 73 -3.2 -5.48213 | overlap 1859689 1859717 TATTTAAAATAAAAA GTTATATT AAA AATGTAAC AATACTTATTAGGTA TERM 2650 1859899 - 1859883 - g 74 -3 -5.41941 | overlap 1859884 TAAAGGAAATAAAAA CCTTAG TTGAT CTAAGA GCTACTTATAAATAT CLK_1086 1859762 - 1860442 + | hypothetical protein CLK_1087 1860432 - 1862810 + | putative 5-methyltetrahydrofolate--homocysteine methyltransferase TERM 2651 1862996 - 1862973 - T 83 -6.8 -5.14985 | opp_overlap 1862968 1862973 TTAAACACATAAAAA CACTTACC TTTATACC GGTAAGTG TTTTGTAGTCTTGTA TERM 2652 1862973 - 1862996 + T 77 -6.8 -4.56629 | opp_overlap 1862973, overlap 1862968 TTAAACACATAAAAA CACTTACC TTTATACC GGTAAGTG TTTTGTAGTCTTGTA TERM 2653 1863097 - 1863152 + T 100 -18.6 -3.93695 | opp_overlap 1863098 1863099 1863101 1863109, overlap 1863088 1863102 GCTACGTCCTGGATA AGGATTTCTAAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTTAGAATTCTG TTTATAAATAATAGA TERM 2654 1863151 - 1863098 - T 100 -19.9 -3.29144 | opp_overlap 1863088 1863097 1863102, overlap 1863099 1863101 1863109 CTACGTCCTGGATAA GGATTTCTAAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTTAGAATTCT GTTTATAAATAATAG TERM 2655 1863150 - 1863099 - T 100 -23.4 -2.57344 | opp_overlap 1863088 1863097 1863102, overlap 1863098 1863101 1863109 TACGTCCTGGATAAG GATTTCTAAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTTAGAATTC TGTTTATAAATAATA TERM 2656 1863148 - 1863101 - T 100 -20.2 -2.82623 | opp_overlap 1863097 1863102, overlap 1863099 1863098 1863109 CGTCCTGGATAAGGA TTTCTAAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTTAGAAT TCTGTTTATAAATAA TERM 2657 1863102 - 1863147 + T 100 -23.7 -3.90766 | opp_overlap 1863101 1863099 1863098 1863109, overlap 1863097 GTCCTGGATAAGGAT TTCTAAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTTAGAA TTCTGTTTATAAATA TERM 2658 1863140 - 1863109 - T 100 -16 -3.59583 | opp_overlap 1863102 1863097, overlap 1863101 1863099 1863098 ATAAGGATTTCTAAA GCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGC TTTAGAATTCTGTTT CLK_1088 1863609 - 1863190 - | hypothetical protein CLK_1089 1864017 - 1864343 + | hypothetical protein TERM 2659 1864574 - 1864611 + F 100 -11.5 -5.54079 | opp_overlap 1864560 1864572 1864570 1864574 CCTCTAAAAACTATA GAGCAGTATAATTTGGA GAAA TCTAAGTTACACTGCTC TTTTTTCGTTTTTAA TERM 2660 1864611 - 1864574 - f 80 -9.3 -3.18031 | opp_overlap 1864574, overlap 1864560 1864572 1864570 CCTCTAAAAACTATA GAGCAGTATAATTTGGA GAAA TCTAAGTTACACTGCTC TTTTTTCGTTTTTAA CLK_1090 1865015 - 1865587 + | sigma-70 family RNA polymerase sigma factor CLK_1091 1865580 - 1867067 + | hypothetical protein TERM 2661 1867109 - 1867136 + F 90 -7.8 -5.09245 | opp_overlap 1867109 ATAAATAAGCAAAAA GAGTATTTCACT AAAA GGTGAGATGCTC TTTTTATAATTTTAG acoR 1867398 - 1869350 + | aco operon transcriptional regulator TERM 2662 1869419 - 1869436 + F 100 -11.3 -5.46706 | opp_overlap 1869419 AAATAATCTTTAGAA GCCTTGC AAAT GCAAGGC TTTTTCTTTTGGCAT TERM 2663 1869436 - 1869419 - f 93 -11.3 -3.35349 | opp_overlap 1869419 AAATAATCTTTAGAA GCCTTGC AAAT GCAAGGC TTTTTCTTTTGGCAT CLK_1093 1869526 - 1869891 + | hypothetical protein acoA 1869912 - 1870895 + | TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit acoB 1870898 - 1871869 + | TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit TERM 2664 1872817 - 1872803 - g 71 -7.2 -3.79866 | overlap 1872801 GGAGAAAGAGAAATA TCCTTT AAA AAAGGA GAAACTTTTATTTTT acoX 1871921 - 1872916 + | acetoin catabolism protein X acoC 1872952 - 1874262 + | TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase acoL 1874275 - 1875666 + | TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase CLK_1099 1875691 - 1876686 + | putative lipoate-protein ligase A TERM 2665 1876826 - 1876852 + F 100 -8.8 -5.20331 | opp_overlap 1876826 AAAGTAAATAAGAAA GAGTATTTCGCT AAA AGTGAGATGCTC TTTTCTTTGTTATTT CLK_1100 1877074 - 1878219 + | glycine betaine/L-proline ABC transporter, ATP-binding protein TERM 2666 1879663 - 1879646 - g 81 -2.7 -5.66989 | opp_overlap 1879646 GAAACATTAAAAAAA TTCCC AGAGCTTA GGGAA GTTTTAGGAAATCTA CLK_1101 1878212 - 1879795 + | glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein TERM 2667 1879893 - 1879929 + F 86 -5.4 -5.64274 | gap 1, opp_overlap 1879893 1879896 TTCTATATAAAGTAA TAGCGGTAGTTATATAT TAGG AT-TTTAACTACCGTTA TTTTTTTATAAATAA thrC 1880092 - 1881573 + | threonine synthase TERM 2668 1882279 - 1882263 - g 70 -5.3 -4.55721 | AAAGCTTATAGAAAA TTTTTAT TCA ATAAAAA AACAATGTGAAAAAT thrB 1881583 - 1882476 + | homoserine kinase CLK_1104 1882603 - 1883922 + | aspartokinase TERM 2669 1885371 - 1885361 - g 72 -2.6 -5.38951 | AATCCATAGAAAAAA TAAA GAA TTTA GATGTAGTAGACAAA hom 1884145 - 1885422 + | homoserine dehydrogenase TERM 2670 1885545 - 1885567 + F 95 -11.2 -3.53224 | TTAAAAATCTTCTAT CCGGTGGAGG CAA CCTCCTCTGG TTTCACCACCGGCTC TERM 2671 1886107 - 1886096 - g 89 -4.4 -5.94214 | opp_overlap 1886088 1886096, overlap 1886088 AATATAATAAAAAAA TCTC ATGA GAGA TCTGTTTATTTTGGA CLK_1106 1886054 - 1887964 + | sensory box sigma-54 dependent transcriptional regulator TERM 2672 1888106 - 1888064 - f 93 -9.4 -4.42156 | opp_overlap 1888075, overlap 1888061 1888067 AAATAAAAATAATAA GAACTGTATAAGAAATAAAC AGT GTTTAATTCTTATACAGTAA AAAGCAGCTTAATGT TERM 2673 1888103 - 1888067 - f 100 -15.5 -4.24569 | opp_overlap 1888075, overlap 1888064 1888061 TAAAAATAATAAGAA CTGTATAAGAAATAAAC AGT GTTTAATTCTTATACAG TAAAAAGCAGCTTAA TERM 2674 1888144 - 1888110 - f 100 -17.5 -4.84527 | opp_overlap 1888110 CTTATACAGTAAAAA GCAGCTTAATGTATA GTTTT TATACATTAAGCTGC TTTTTATTTTTAGTG TERM 2675 1888110 - 1888144 + F 100 -18.2 -5.65496 | opp_overlap 1888110 CTTATACAGTAAAAA GCAGCTTAATGTATAG TTT TTATACATTAAGCTGC TTTTTATTTTTAGTG CLK_1107 1888474 - 1889640 + | NADH-dependent butanol dehydrogenase TERM 2676 1889728 - 1889691 - f 100 -18.1 -3.45054 | opp_overlap 1889699, overlap 1889699 TTGTATAACTTATAA CCCTAAAACTTCCTTTT AAAA AAAAGGAAGTTTTAGAG TCGAATATTACTTTA TERM 2677 1889720 - 1889699 - f 95 -10.3 -4.21936 | opp_overlap 1889699, overlap 1889691 CTTATAACCCTAAAA CTTCCTTTT AAAA AAAAGGAAG TTTTAGAGTCGAATA TERM 2678 1889699 - 1889720 + F 95 -10.3 -4.14243 | opp_overlap 1889691 1889699 CTTATAACCCTAAAA CTTCCTTTT AAAA AAAAGGAAG TTTTAGAGTCGAATA CLK_1108 1889969 - 1890856 + | oxidoreductase, NAD/FAD-binding TERM 2679 1892153 - 1892173 + G 70 -8.3 -3.12666 | overlap 1892151 1892150 ATGCAGGTGGAGATG CAGTAACAG GTG CTGCTACTG TAATTTTAGCTATGG gltA 1890856 - 1892238 + | glutamate synthase (NADPH), homotetrameric TERM 2680 1892288 - 1892240 - f 75 -6.5 -4.49958 | gap 1, opp_overlap 1892254, overlap 1892254 ATTTGAGTAAATAAA TTAATTATAAAAAACTTCAACA AAATGA CGTTGAAGTTTTTTATT-TTAA TAATGATTTTAAAAA TERM 2681 1892275 - 1892254 - f 77 -5.2 -5.38249 | opp_overlap 1892254, overlap 1892240 ATTAATTATAAAAAA CTTCAACA AAATGA CGTTGAAG TTTTTTATTTTAATA TERM 2682 1892254 - 1892275 + F 86 -4.5 -5.83211 | opp_overlap 1892254 1892240 ATTAATTATAAAAAA CTTCAAC AAAATGAC GTTGAAG TTTTTTATTTTAATA CLK_1110 1892467 - 1894431 + | sensory box sigma-54 dependent transcriptional regulator CLK_1111 1894438 - 1895139 + | pentapeptide repeat-containing protein TERM 2683 1896253 - 1896243 - g 70 -4 -4.91511 | opp_overlap 1896243 ACCTTATTATAAAAA TTGT ATT ACAA ATTATAAGTTTGGTG CLK_1112 1895563 - 1896921 + | hypothetical protein TERM 2684 1896936 - 1896963 + F 83 -7.8 -4.67353 | opp_overlap 1896930 1896922 1896936 ATTAAATATCAAAGA GCACTTAAGG AATATAAA CCTTAGGTGC TTTTTGCATACCTAA CLK_1113 1897015 - 1897212 + | hypothetical protein CLK_1114 1897415 - 1897576 + | putative lipoprotein TERM 2685 1897626 - 1897659 + F 74 -8.3 -3.46858 | opp_overlap 1897626 1897625, overlap 1897624 1897622 CTTATATTAACTAAG GGTCACCTATAAA TAATTAAT TTTATAGGCGACC TGTGTTTTAATCTAA TERM 2686 1897659 - 1897626 - f 81 -10.5 -2.65521 | opp_overlap 1897624 1897622 1897626, overlap 1897625 CTTATATTAACTAAG GGTCACCTATAAA TAATTAAT TTTATAGGCGACC TGTGTTTTAATCTAA CLK_1115 1897926 - 1898087 + | hypothetical protein TERM 2687 1898097 - 1898110 + F 79 -3.8 -5.79595 | opp_overlap 1898097 GGTTAAGTTTTAAAG GGCT AATAAG AGCC TTTTTTATTTTCAAG TERM 2688 1898329 - 1898314 - g 76 -7.6 -3.99062 | overlap 1898304 AACAGGTACTATAAA TACACC AAGT GGTGTA AATGTACGAGCAGGC CLK_1116 1898195 - 1898377 + | bacteriophage endolysin TERM 2689 1898437 - 1898450 + F 78 -8.1 -3.91882 | opp_overlap 1898436 1898433 ATATACATATATTAC CCACC ACAT GGTGG TTATGTTTATGATAA TERM 2690 1898490 - 1898512 + F 73 -3.4 -5.57729 | ATATTAAATTTTAGA GGTACTTTTG TAA TGGGAGTACC TTTTTTGTATTATTT CLK_1117 1898668 - 1898883 + | putative phage-related protein TERM 2691 1898932 - 1898989 + F 75 -8.2 -3.5771 | gap 1, opp_overlap 1898936 1898948, overlap 1898936 1898948 1898980 AGAAAAAAGATTATT TAAACAAAAATAAAAATAGGTAGCACT TAATT AG-GCTACCTATTTTTATTCTTTATTA TTTAAAGGAATTTTT TERM 2692 1898985 - 1898936 - f 95 -11.2 -3.73281 | gap 1, opp_overlap 1898932 1898936 1898948 1898980, overlap 1898948 AAAAGATTATTTAAA CAAAAATAAAAATAGGTAGCACT TAATT AG-GCTACCTATTTTTATTCTTT ATTATTTAAAGGAAT TERM 2693 1898936 - 1898986 + F 71 -7.4 -3.91488 | opp_overlap 1898936 1898948, overlap 1898932 1898948 1898980 AAAAGATTATTTAAA CAAA-AATAAAAATAGGTAGCACT TAATT AG-GCTACCTATTTTTATTCTTTA TTATTTAAAGGAATT TERM 2694 1898948 - 1898973 + F 90 -7 -5.44198 | gap 1, opp_overlap 1898936 1898948, overlap 1898936 1898932 AAACAAAAATAAAAA TAGGTAGCACT TAATT AG-GCTACCTA TTTTTATTCTTTATT TERM 2695 1898973 - 1898948 - f 93 -7 -5.77734 | gap 1, opp_overlap 1898948 1898936 1898932, overlap 1898936 AAACAAAAATAAAAA TAGGTAGCACT TAATT AG-GCTACCTA TTTTTATTCTTTATT TERM 2696 1899064 - 1899108 + F 100 -13.9 -2.8655 | opp_overlap 1899070 1899076, overlap 1899076 ATACAAACGTCCTTA TTTAAACAAAAAGAACCCC AATAAAA GGGGTTCTTTTTGTGTGAA TCTAATATAGGTCGG TERM 2697 1899102 - 1899070 - f 100 -15.1 -3.64822 | opp_overlap 1899064 1899076, overlap 1899076 ACGTCCTTATTTAAA CAAAAAGAACCCC AATAAAA GGGGTTCTTTTTG TGTGAATCTAATATA TERM 2698 1899096 - 1899076 - f 100 -8.3 -5.30616 | opp_overlap 1899076 1899064, overlap 1899070 TTATTTAAACAAAAA GAACCCC AATAAAA GGGGTTC TTTTTGTGTGAATCT TERM 2699 1899076 - 1899096 + F 91 -8.3 -4.99638 | opp_overlap 1899070 1899076, overlap 1899064 TTATTTAAACAAAAA GAACCCC AATAAAA GGGGTTC TTTTTGTGTGAATCT TERM 2700 1899202 - 1899224 + F 78 -9.2 -3.09842 | opp_overlap 1899202, overlap 1899201 1899199 ATGTAAATTTTTAAA GGTACTTCTG TAA TGGAAGTACC CTCTTTTTTGCATGG TERM 2701 1899224 - 1899202 - f 72 -7.8 -3.64236 | opp_overlap 1899202 1899201 1899199 ATGTAAATTTTTAAA GGTACTTC TGTAATG GAAGTACC CTCTTTTTTGCATGG TERM 2702 1899588 - 1899556 - g 71 -2.1 -5.42164 | overlap 1899558 TATAAAGAAGAAAAA TTTATTTGTTTACGA CAA CCAAATACAAATAAA TTTATTAAACTATCA CLK_1118 1899379 - 1899615 + | hypothetical protein TERM 2703 1899624 - 1899651 + F 72 -4.9 -4.9445 | AAAGTAAAAATCAAA GAGGTGGCTTT CTAAGT GAAGCTATCTC TTTTTAATTACTTGT CLK_1119 1899771 - 1900322 + | hypothetical protein TERM 2704 1900327 - 1900367 + F 100 -10.7 -4.38712 | opp_overlap 1900332 1900338, overlap 1900328 1900332 1900338 AATTAAACTAAACAT ATAAACAAAAACCGTAC TAAAAAC GTACGGTTTTTGTTTGG TTTTATAAAAATAGA TERM 2705 1900328 - 1900366 + F 100 -14.2 -3.22906 | opp_overlap 1900332 1900338, overlap 1900327 1900332 1900338 ATTAAACTAAACATA TAAACAAAAACCGTAC TAAAAAC GTACGGTTTTTGTTTG GTTTTATAAAAATAG TERM 2706 1900332 - 1900362 + F 100 -12.8 -4.26881 | opp_overlap 1900332 1900338, overlap 1900328 1900327 1900338 AACTAAACATATAAA CAAAAACCGTAC TAAAAAC GTACGGTTTTTG TTTGGTTTTATAAAA TERM 2707 1900362 - 1900332 - f 100 -12.8 -4.30396 | opp_overlap 1900328 1900327 1900332 1900338, overlap 1900338 AACTAAACATATAAA CAAAAACCGTAC TAAAAAC GTACGGTTTTTG TTTGGTTTTATAAAA TERM 2708 1900338 - 1900356 + F 83 -6 -5.43974 | opp_overlap 1900338 1900332, overlap 1900332 1900328 1900327 ACATATAAACAAAAA CCGTAC TAAAAAC GTACGG TTTTTGTTTGGTTTT TERM 2709 1900356 - 1900338 - f 83 -6 -5.4433 | opp_overlap 1900332 1900328 1900327 1900338, overlap 1900332 ACATATAAACAAAAA CCGTAC TAAAAAC GTACGG TTTTTGTTTGGTTTT CLK_1120 1900360 - 1900647 + | hypothetical protein CLK_1121 1901148 - 1901780 + | hypothetical protein TERM 2710 1902265 - 1902241 - g 70 -5.1 -4.55697 | opp_overlap 1902241 ATTTGCAGAAAGAAA TCTATCTAAAG AAA CTTTAAAAAGA TTAGATGAGGACTGT CLK_1122 1901813 - 1902367 + | hypothetical protein TERM 2711 1902466 - 1902522 + F 78 -4.2 -5.48028 | gap 1, opp_overlap 1902466 TTCAATTATTAAAAA TCATGTGTTGTATAGAA-CTCTA CTTAAATAAATC TAGAAATTCTATACAACATATGA TTTTATTTTTATTTA alr 1902805 - 1903974 + | alanine racemase TERM 2712 1904006 - 1903990 - f 75 -3.8 -5.56263 | opp_overlap 1904002 AGGATAAAATAAAAA TTTAGA AGATG TCTAAA AATAAAATATATTTA TERM 2713 1904138 - 1904176 + F 70 -4 -5.17786 | opp_overlap 1904142, overlap 1904140 ACGATTTTGAGTTTT AACACCTAATTCTTCA GGCATTA TTAGGAATTAGGTGTA TTTTTAATTTTCTTA TERM 2714 1904140 - 1904174 + F 71 -6.6 -4.17748 | opp_overlap 1904142, overlap 1904138 GATTTTGAGTTTTAA CACCTAATTCTTCA GGCATTA TTAGGAATTAGGTG TATTTTTAATTTTCT CLK_1124 1904433 - 1905905 + | methyl-accepting chemotaxis protein CLK_1125 1905963 - 1907303 + | xanthine/uracil permease family protein TERM 2715 1907374 - 1907339 - f 90 -10 -3.72745 | opp_overlap 1907339, overlap 1907335 1907332 1907359 AAAATAAATAATGAA CCCTGTTTAATTAT TGAGAAGC ATAACTAAACAGGG TTTTAATTTTGCTTC TERM 2716 1907339 - 1907374 + F 83 -7.8 -4.72729 | opp_overlap 1907335 1907332 1907339 1907359 AAAATAAATAATGAA CCCTGTTTAATTAT TGAGAAGC ATAACTAAACAGGG TTTTAATTTTGCTTC CLK_1126 1907541 - 1908374 + | hypothetical protein TERM 2717 1908447 - 1908484 + T 73 -4.2 -5.19879 | opp_overlap 1908457, overlap 1908448 ATTTAAAAGATGGAG ACCTATGAAATCCTTA CAATTT TAAGGAAATCATAGGC TTTTTATATTTAAAA TERM 2718 1908448 - 1908483 + T 73 -7.7 -3.70843 | opp_overlap 1908457, overlap 1908447 TTTAAAAGATGGAGA CCTATGAAATCCTTA CAATTT TAAGGAAATCATAGG CTTTTTATATTTAAA CLK_1127 1909475 - 1908591 - | short chain dehydrogenase/reductase family oxidoreductase TERM 2719 1909717 - 1909673 - H 91 -8.2 -5.00884 | opp_overlap 1909673 1909672 ATTTGGTTTAAAAAA TCCTAGTTTGATTTAAAAAT AACTG ATTTATAAATCAGACTAAGA GTTTAAATGTTAAAA TERM 2720 1909903 - 1909864 - H 80 -9.8 -2.81272 | gap 1, opp_overlap 1909866, overlap 1909863 1909866 TATTATCAGGCAAAT TATCTAAAAAAAC-AACAA AGT TTGTTCATTTTTTTAGATA TTAGACGATATAAAT CLK_1128 1909967 - 1911973 + | methyl-accepting chemotaxis protein TERM 2721 1911989 - 1912008 + F 77 -6.4 -4.59109 | ATAGGTGTTATAAAG CCTCATGG TAAT CTATGGGG TTTTTGAACAATATG TERM 2722 1912164 - 1912111 - f 100 -12.3 -4.4572 | gap 1, opp_overlap 1912109 1912116, overlap 1912114 1912116 AATATTCTAAAGAAA TAAT-AGTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACTTAGTA AGTTCTAATTTAATA TERM 2723 1912160 - 1912114 - f 100 -15.6 -4.33281 | opp_overlap 1912109 1912116, overlap 1912111 1912116 ATTCTAAAGAAATAA TAGTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACTT AGTAAGTTCTAATTT TERM 2724 1912116 - 1912158 + F 100 -18.2 -3.23979 | opp_overlap 1912114 1912111 1912116, overlap 1912109 TCTAAAGAAATAATA GTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTAC TTAGTAAGTTCTAAT TERM 2725 1912158 - 1912116 - f 100 -18.2 -3.75911 | opp_overlap 1912116 1912109, overlap 1912114 1912111 TCTAAAGAAATAATA GTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTAC TTAGTAAGTTCTAAT CLK_1129 1912884 - 1913897 + | hypothetical protein TERM 2726 1913922 - 1913962 + T 93 -7.7 -5.13722 | opp_overlap 1913923, overlap 1913923 TTTTTATGTTTATAC ATCCCTATTTAGCTAGG AGAGAAG CATGGCTAAATAGGGAA TTTTATTTTAATAAA TERM 2727 1913923 - 1913961 + T 95 -11.2 -3.67149 | opp_overlap 1913923, overlap 1913922 TTTTATGTTTATACA TCCCTATTTAGCTAGG AGAGAAG CATGGCTAAATAGGGA ATTTTATTTTAATAA TERM 2728 1913961 - 1913923 - T 73 -9 -2.88544 | opp_overlap 1913923 1913922 TTTTATGTTTATACA TCCCTATTTAGCTAGG AGAGAAG CATGGCTAAATAGGGA ATTTTATTTTAATAA CLK_1130 1914601 - 1914050 - | hypothetical protein TERM 2729 1915838 - 1915857 + G 80 -2.2 -5.75945 | GGGGATGTTTGCCCC GTATTATT TCCA AAGAATAC TTTTTTTTAAGCGAT TERM 2730 1917318 - 1917336 + G 74 -6.1 -4.48072 | TATAATGCCAGGCTA TCTTCTA AACTA TAGAAGA TTTTATGCTAAATAT CLK_1131 1914961 - 1918194 + | Snf2/Rad54 family helicase TERM 2731 1918196 - 1918244 + T 85 -11.4 -2.91467 | opp_overlap 1918180 1918196 1918201, overlap 1918201 TTTTTAAATTTTAAA TAGAAGATAGTGTCTGAAAATA TATTT TATTTTGAGACACCATCTTTTA TGTAATTAAGGATTT TERM 2732 1918244 - 1918196 - T 95 -11.4 -3.71649 | opp_overlap 1918196 1918201, overlap 1918180 1918201 TTTTTAAATTTTAAA TAGAAGATAGTGTCTGAAAATA TATTT TATTTTGAGACACCATCTTTTA TGTAATTAAGGATTT TERM 2733 1918201 - 1918239 + T 89 -9.1 -4.614 | opp_overlap 1918201 1918196, overlap 1918196 AAATTTTAAATAGAA GATAGTGTCTGAAAATA TATTT TATTTTGAGACACCATC TTTTATGTAATTAAG TERM 2734 1918239 - 1918201 - T 100 -11.3 -3.84619 | opp_overlap 1918196 1918201, overlap 1918196 AAATTTTAAATAGAA GATAGTGTCTGAAAATA TATTT TATTTTGAGACACCATC TTTTATGTAATTAAG CLK_1132 1918654 - 1918250 - | hypothetical protein TERM 2735 1919003 - 1918969 - H 70 -4.4 -4.98436 | opp_overlap 1918999, overlap 1918960 1918971 TCAAGATGATAAAAA TATCAAAATGAAACAT AAA AAGTATCATTTTGAGA ATAGTTCTTATGATT TERM 2736 1919001 - 1918971 - H 73 -7 -4.10552 | opp_overlap 1918999, overlap 1918960 1918969 AAGATGATAAAAATA TCAAAATGAAACAT AAA AAGTATCATTTTGA GAATAGTTCTTATGA CLK_1133 1919207 - 1919731 + | formylmethanofuran dehydrogenase E subunit-related protein TERM 2737 1921305 - 1921293 - g 77 -4.9 -5.23292 | CCAGATAAAAGAAAA GAAAT AGT ATTTC AGCTTCAAGAAAAAA CLK_1134 1919868 - 1921463 + | peptide/opine/nickel uptake ABC transporter substrate-binding protein TERM 2738 1921549 - 1921572 + G 70 -8.8 -2.70802 | overlap 1921548 ACATTAAATTTTTTT ATCCCTAGGC TTAT GCCTGGGGAC CCTTTTGTTATATTA CLK_1135 1921477 - 1922451 + | peptide/opine/nickel uptake ABC transporter permease CLK_1136 1922455 - 1923276 + | peptide/opine/nickel uptake ABC transporter permease TERM 2739 1924095 - 1924076 - g 75 -7.2 -4.03413 | opp_overlap 1924079 1924080, overlap 1924080 ATTCTTCTATAGAAA TAAATCCC TTTG GGGACTTA TGGGGAATACCTAAT TERM 2740 1924091 - 1924080 - g 73 -5.8 -4.62441 | opp_overlap 1924079 1924080, overlap 1924076 TTCTATAGAAATAAA TCCC TTTG GGGA CTTATGGGGAATACC CLK_1137 1923307 - 1924989 + | ABC transporter, ATP-binding protein TERM 2741 1925131 - 1925100 - T 100 -8.2 -5.64421 | gap 1, opp_overlap 1925100 1925099 1925104 AGGTTAAATAAAAAA TAAAGGCGTACCATA GCT TA-GGTATGCCTTTA ATTATAGCAAATATC TERM 2742 1925100 - 1925131 + T 81 -10.4 -2.58249 | gap 1, opp_overlap 1925100, overlap 1925099 1925104 AGGTTAAATAAAAAA TAAAGGCGTACCATA GCT TA-GGTATGCCTTTA ATTATAGCAAATATC CLK_1138 1925812 - 1925225 - | putative DNA polymerase III, epsilon subunit TERM 2743 1926387 - 1926360 - g 70 -4.2 -4.92812 | CTACAAGAAAACAAA TAGGAACAAAAT CTAT ATCCTGTGCCTA TGTAGAACCTACAGA CLK_1139 1926107 - 1927057 + | hypothetical protein TERM 2744 1927136 - 1927163 + F 89 -12.1 -2.85297 | opp_overlap 1927136, overlap 1927130 TTGTAAAATTATAAA GCAGCCTCTAT GAGTGA ATAGGGGCTGC TAATATTTAAAGTGA TERM 2745 1927163 - 1927136 - f 95 -9.9 -4.208 | opp_overlap 1927136 1927130 TTGTAAAATTATAAA GCAGCCTCTAT GAGTGA ATAGGGGCTGC TAATATTTAAAGTGA CLK_1140 1927329 - 1927964 + | UbiE/COQ5 family methlytransferase TERM 2746 1927980 - 1928024 + T 100 -12.6 -5.10029 | gap 1, opp_overlap 1927970 1927968 1927983 AAACATCCTCTTTAG GAAGATAGCGTATCAAAAATA AATC TA-TTTTGATACACTATCTTC TTTTTTCAAATTAAT TERM 2747 1928021 - 1927983 - T 87 -10.7 -3.14344 | gap 1, opp_overlap 1927980 CATCCTCTTTAGGAA GATAGCGTATCAAAAATA AATC TA-TTTTGATACACTATC TTCTTTTTTCAAATT TERM 2748 1928062 - 1928072 + T 83 -4 -5.86332 | ATACTTATATTTTTA TTGA ATA TCAA TTTTTTTTCCCTTGA CLK_1141 1928499 - 1928059 - | heat shock protein TERM 2749 1928438 - 1928454 + g 78 -3 -5.64421 | AAATTATTAGAAAAT GGTGAA AAAAA TTCATC TTTTTTGTTTAAACT CLK_1142 1928826 - 1930010 + | major facilitator family protein CLK_1143 1930158 - 1930721 + | hypothetical protein CLK_1144 1930714 - 1930896 + | hypothetical protein TERM 2750 1931418 - 1931396 - g 75 -4.8 -5.02287 | opp_overlap 1931395 GATAAAAACATAAAA TCTGTAGTGG ATG CCACTGGAGA ACTTTTACTAAAGGT fruK 1930922 - 1931827 + | fructose-1-phosphate kinase TERM 2751 1931910 - 1931941 + T 75 -8.9 -3.15574 | opp_overlap 1931910 1931916, overlap 1931915 1931916 AGTTTAATAAATTAA TAAAAATCCCACA ATAAAA TGTGGGACTTTTA TATTAATCAAATTGC TERM 2752 1931941 - 1931910 - T 95 -11.1 -3.6914 | opp_overlap 1931910 1931915 1931916, overlap 1931916 AGTTTAATAAATTAA TAAAAATCCCACA ATAAAA TGTGGGACTTTTA TATTAATCAAATTGC TERM 2753 1931916 - 1931935 + T 70 -7.9 -3.41627 | opp_overlap 1931916 1931910, overlap 1931915 1931910 ATAAATTAATAAAAA TCCCACA ATAAAA TGTGGGA CTTTTATATTAATCA TERM 2754 1931935 - 1931916 - T 93 -7.9 -5.25906 | opp_overlap 1931915 1931910 1931916, overlap 1931910 ATAAATTAATAAAAA TCCCACA ATAAAA TGTGGGA CTTTTATATTAATCA CLK_1146 1933323 - 1931944 - | amino acid/peptide transporter TERM 2755 1933411 - 1933447 + H 75 -6.9 -4.45577 | opp_overlap 1933411 1933410 1933405 AAAATATAATAAAAG CAATAAATATTAATTTA AAT TAAATAAAAATTTATTG TTTTATCCAATTTAT CLK_1147 1933927 - 1934082 + | hypothetical protein TERM 2756 1934870 - 1934853 - g 78 -4.3 -5.43514 | overlap 1934845 AAAAGAATTAAAAAA TTTAAAT GAAA ATTTAAA AAGTTATAATACTAG CLK_1148 1934233 - 1935207 + | hypothetical protein TERM 2757 1935447 - 1935492 + T 100 -16.7 -3.41422 | opp_overlap 1935447, overlap 1935442 ATATACATGAGTTAA TTCTATATGTATTACTTCAAA ACTA TTTAAAGTAATACATATAGAA TTATAAGCTTATTTT TERM 2758 1935492 - 1935447 - T 100 -18.9 -3.12874 | opp_overlap 1935447 1935442 ATATACATGAGTTAA TTCTATATGTATTACTTCAAA ACTA TTTAAAGTAATACATATAGAA TTATAAGCTTATTTT CLK_1149 1936026 - 1935493 - | hypothetical protein CLK_1150 1936289 - 1936444 + | hypothetical protein CLK_1151 1936481 - 1937440 + | PfkB family kinase TERM 2759 1937547 - 1937576 + T 100 -10.3 -5.39681 | opp_overlap 1937547 TTTTAACAATAAAAA TCTGTGAATAAAA TATA TTTTATTTACAGA TTTTTATTTAATTCT TERM 2760 1937576 - 1937547 - T 100 -8.1 -5.29445 | opp_overlap 1937547 TTTTAACAATAAAAA TCTGTGAATAAAA TATA TTTTATTTACAGA TTTTTATTTAATTCT safA 1938226 - 1937591 - | spore coat assembly protein SafA TERM 2761 1938340 - 1938286 - R 91 -13.6 -2.69528 | opp_overlap 1938278 1938288 1938314, overlap 1938314 TTAAATTTAAATGCA TATTTATATCCTATAATAAAAA TGGAAATAAAT TTTTTATTATAGGATATAAATA TAATCATAATAAAAT TERM 2762 1938288 - 1938338 + r 88 -11.8 -2.83715 | opp_overlap 1938286 1938314, overlap 1938278 1938314 AAATTTAAATGCATA TTTATATCCTATAATAAAAA TGGAAATAAAT TTTTTATTATAGGATATAAA TATAATCATAATAAA TERM 2763 1938591 - 1938625 + r 90 -7.5 -4.97824 | gap 2, opp_overlap 1938591 AGATCTTATTAGATA GGCTACATC--TTAAAT CTT ATTTAATAGATGTAGCC TTTTATTTGGATTTT CLK_1153 1939038 - 1938628 - | hypothetical protein CLK_1154 1939385 - 1939594 + | cold shock protein TERM 2764 1939760 - 1939733 - f 86 -9.4 -3.89614 | gap 1, opp_overlap 1939733 GTTAATTTGTATAAA CACTAGAAATGTT TAA AAC-TTTCTAGTG TTTTATTATATTTAT TERM 2765 1939733 - 1939760 + F 100 -9.4 -4.96657 | gap 1, opp_overlap 1939733 GTTAATTTGTATAAA CACTAGAAATGTT TAA AAC-TTTCTAGTG TTTTATTATATTTAT CLK_1155 1939965 - 1941968 + | methyl-accepting chemotaxis protein TERM 2766 1942074 - 1942038 - T 100 -12.6 -4.62069 | opp_overlap 1942038 1942032 1942042, overlap 1942021 1942042 TTTTTATGGTAAAAA TAAACACTATCGAATT CTAGT AAATCGATAGTGTTTA TACTATATTTGTTTA TERM 2767 1942038 - 1942074 + T 91 -12.6 -2.87313 | opp_overlap 1942021 1942038 1942042, overlap 1942032 1942042 TTTTTATGGTAAAAA TAAACACTATCGAATT CTAGT AAATCGATAGTGTTTA TACTATATTTGTTTA TERM 2768 1942042 - 1942070 + T 82 -9 -4.08111 | opp_overlap 1942038 1942042, overlap 1942038 1942032 TATGGTAAAAATAAA CACTATCGAATT CTAGT AAATCGATAGTG TTTATACTATATTTG TERM 2769 1942070 - 1942042 - T 93 -9 -4.87389 | opp_overlap 1942042 1942038 1942032, overlap 1942038 TATGGTAAAAATAAA CACTATCGAATT CTAGT AAATCGATAGTG TTTATACTATATTTG CLK_1156 1943712 - 1942132 - | putative drug resistance ABC transporter, ATP-binding protein CLK_1157 1943989 - 1944483 + | YbaK/prolyl-tRNA synthetase domain-containing protein TERM 2770 1944637 - 1944690 + F 100 -10.1 -4.48869 | gap 1, opp_overlap 1944631 1944644, overlap 1944641 1944644 AAGATAAAGTTTATT TTATA-AAGATGATGTCTCAAAAT AGATTTA ATTTTGAGACATCATCTTATTTAG TTTGTATTATTTTTA TERM 2771 1944641 - 1944685 + F 100 -14.7 -4.22226 | opp_overlap 1944631 1944644, overlap 1944637 1944644 TAAAGTTTATTTTAT AAAGATGATGTCTCAAAAT AGATTTA ATTTTGAGACATCATCTTA TTTAGTTTGTATTAT TERM 2772 1944644 - 1944682 + F 100 -16.4 -4.1958 | opp_overlap 1944644, overlap 1944641 1944637 AGTTTATTTTATAAA GATGATGTCTCAAAAT AGATTTA ATTTTGAGACATCATC TTATTTAGTTTGTAT TERM 2773 1944682 - 1944644 - f 100 -16.4 -3.89524 | opp_overlap 1944644 1944641 1944637 AGTTTATTTTATAAA GATGATGTCTCAAAAT AGATTTA ATTTTGAGACATCATC TTATTTAGTTTGTAT TERM 2774 1945316 - 1945336 + G 72 -6.9 -4.0641 | overlap 1945318 AAAGAGTGAGACCTT TAGTATCCT GTA AGGGTACTG TTTGTGTCCATGGAC CLK_1158 1945021 - 1945875 + | sulfite/nitrite reductase family protein TERM 2775 1946031 - 1946073 + T 85 -11.5 -2.5001 | opp_overlap 1946034, overlap 1946034 CATTTTTCATAGGAG TAAGCGACTCGCTGCAAAT CTGTT ATTTGTAGTGAATCGCTTG ATTAGTGAGAGTTAT TERM 2776 1946070 - 1946034 - T 75 -8.8 -3.24747 | opp_overlap 1946031 1946034 TTTTCATAGGAGTAA GCGACTCGCTGCAAAT CTGTT ATTTGTAGTGAATCGC TTGATTAGTGAGAGT TERM 2777 1946034 - 1946070 + T 93 -11 -3.40073 | opp_overlap 1946034, overlap 1946031 TTTTCATAGGAGTAA GCGACTCGCTGCAAAT CTGTT ATTTGTAGTGAATCGC TTGATTAGTGAGAGT cheV 1946978 - 1946085 - | chemotaxis protein CheV TERM 2778 1946316 - 1946330 + g 85 -2.8 -5.9873 | overlap 1946317 AATTTGTACATCCTC TGTGAA ATC TTCACC TTTTTTTTCTACTAA TERM 2779 1946317 - 1946329 + g 70 -6.3 -4.17611 | overlap 1946316 ATTTGTACATCCTCT GTGAA ATC TTCAC CTTTTTTTTCTACTA TERM 2780 1947025 - 1947055 + H 70 -7.2 -3.76387 | AAAATGCTTATATTT TATTTATTGTATAT TTC GTATATAATAAATA TTACTTTATATTTTT TERM 2781 1947732 - 1947717 - g 85 -4.7 -5.56372 | AAATTAAAAGAAAAA CCACA TATTAT TGTGG GATCTCCAGGAAGAA TERM 2782 1947792 - 1947775 - g 71 -4.9 -4.74858 | TAAAGAAAAAAAAGA TAACTGC CCAT ACAGTTA AAACTATAGTTATAG CLK_1160 1947348 - 1948613 + | DEAD-box ATP dependent DNA helicase TERM 2783 1948620 - 1948608 - f 80 -3.5 -5.98675 | CATAAAAAGAAAAAA TATTA ATT TAATA ACACAAAAAGGTGGT TERM 2784 1948625 - 1948673 + F 89 -9.1 -4.64766 | opp_overlap 1948630, overlap 1948630 TTAATTTAATAACAC AAAAAGGTGGTGTTTTAAAATAA AAT TTATTTTGAGACTCCTCCTTTTA TTTTTGAAATATAAA TERM 2785 1948668 - 1948630 - f 73 -4.6 -5.2015 | opp_overlap 1948625 1948630 TTAATAACACAAAAA GGTGGTGTTTTAAAATAA AAT TTATTTTGAGACTCCTCC TTTTATTTTTGAAAT TERM 2786 1948630 - 1948668 + F 100 -9 -5.27023 | opp_overlap 1948630, overlap 1948625 TTAATAACACAAAAA GGTGGTGTTTTAAAATAA AAT TTATTTTGAGACTCCTCC TTTTATTTTTGAAAT CLK_1161 1948936 - 1949772 + | RNA-binding protein deaD 1949960 - 1951405 + | ATP-dependent RNA helicase DeaD TERM 2787 1951494 - 1951459 - f 93 -10.9 -3.31845 | opp_overlap 1951459, overlap 1951454 1951451 ATCAGAATAATTTAA TCTATTTATATAATA TTTGGG TATTATATAAATAGA TTTATTAAGAAAATA TERM 2788 1951459 - 1951494 + F 100 -11.6 -4.1552 | opp_overlap 1951459 1951454 1951451 ATCAGAATAATTTAA TCTATTTATATAATAT TTGG GTATTATATAAATAGA TTTATTAAGAAAATA TERM 2789 1951605 - 1951595 - g 72 -4 -5.17353 | opp_overlap 1951595 ATATTTAGTAAAAAA TTTG TAG CAAA GCTTTTATTGTATTC TERM 2790 1952739 - 1952721 - g 77 -8.2 -3.72588 | opp_overlap 1952720, overlap 1952724 GAATGGATACTCAAA TAAGCCTT GAT AAGGCTCA ATATATTAATGTAAT TERM 2791 1952736 - 1952724 - g 76 -7.7 -3.98913 | opp_overlap 1952720, overlap 1952721 TGGATACTCAAATAA GCCTT GAT AAGGC TCAATATATTAATGT CLK_1163 1951559 - 1956016 + | hypothetical protein TERM 2792 1956055 - 1956110 + F 70 -7.4 -3.78904 | opp_overlap 1956056 1956062, overlap 1956058 1956062 AGATTTAATTTAAAA TC-GCAAAGGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCCTTTGTAGA TTCTTAAATTTAATA TERM 2793 1956058 - 1956106 + F 86 -11.5 -2.67717 | gap 1, opp_overlap 1956056 1956062, overlap 1956055 1956062 TTTAATTTAAAATCG CAAAGGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCCTTTG TAGATTCTTAAATTT TERM 2794 1956062 - 1956102 + F 71 -6.5 -4.02253 | gap 1, opp_overlap 1956056 1956062, overlap 1956058 1956055 ATTTAAAATCGCAAA GGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCC TTTGTAGATTCTTAA TERM 2795 1958568 - 1958556 - g 72 -4.1 -5.13722 | TGTATGAAAATAAAA TCTCA GAG CGAGA GGAATCCTTAAAAAA CLK_1164 1956410 - 1960489 + | leucine-rich repeat-containing protein TERM 2796 1960547 - 1960584 + F 100 -9.5 -5.8901 | gap 1, opp_overlap 1960547 ATATATAAGAGTAAA GAGAATTAACATTCTTTA TAT TAAAGGG-GTTAATTCTC TTTTTTATTTTATAT TERM 2797 1960849 - 1960880 + F 73 -5.5 -4.82667 | opp_overlap 1960855 1960859, overlap 1960851 TATTAATATTAGCTT TTTAAATAATTTT TATAAT AAAATTATTTAGA TTTTTGATATAATAA TERM 2798 1960975 - 1960987 + G 71 -4.9 -4.77719 | opp_overlap 1960974, overlap 1960970 1960974 GGTTTCATTTTAAAG CTAAT AAT ATTAG TTTTATTAGCTTTTA CLK_1165 1960945 - 1961874 + | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein TERM 2799 1961904 - 1961942 + T 81 -7.8 -4.43309 | gap 2, opp_overlap 1961904 1961897 CTATTAAATTATTAA TACTCCCTATTATCACAA CTAGA TTGTGA-A-TAGGGAGTA TTTTAATTAAAATTG TERM 2800 1961942 - 1961904 - T 74 -8.5 -3.34227 | gap 2, opp_overlap 1961904, overlap 1961897 CTATTAAATTATTAA TACTCCCTATTATCACAAC TAG ATTGTGA-A-TAGGGAGTA TTTTAATTAAAATTG CLK_1166 1962515 - 1962000 - | ferritin family protein TERM 2801 1962410 - 1962394 - G 71 -2.3 -5.44119 | overlap 1962406 TGCACTCTAAAAAAA TTAGC AAATCCA GCTAA ATCCTCTGATTCAGC CLK_1167 1962920 - 1963774 + | chemotaxis response regulator/CheC-like domain-containing protein cheX 1963774 - 1964253 + | chemotaxis protein CheX TERM 2802 1964320 - 1964291 - T 79 -8.1 -4.1891 | opp_overlap 1964291, overlap 1964294 TTTGTTTAATATAAA TAAGCACTTAT AACTTTAA ATAAGTGCTTA TTTTAAAATTATTCT TERM 2803 1964291 - 1964320 + T 80 -8.1 -4.24726 | opp_overlap 1964291 1964294 TTTGTTTAATATAAA TAAGCACTTAT AACTTTAA ATAAGTGCTTA TTTTAAAATTATTCT CLK_1169 1965777 - 1964419 - | hypothetical protein TERM 2804 1966314 - 1966333 + H 100 -9.4 -6.23545 | opp_overlap 1966318 GTCTTTATTATTTAT TAAAGAGC TTAT GCTCTTTA TTTTTTTTATTTACA CLK_1170 1966515 - 1966718 + | small, acid-soluble spore protein alpha CLK_1171 1966779 - 1966979 + | small, acid-soluble spore protein beta TERM 2805 1967036 - 1967070 + T 100 -13.9 -4.42851 | opp_overlap 1967036 1967032 1967040 AAGTAATTTAATTGA GGAATCATATAAGAG TTTAT TTCTTATATGATTCC TTTTAAGTTTATTAG TERM 2806 1967070 - 1967036 - T 91 -13.2 -2.57757 | opp_overlap 1967036, overlap 1967032 1967040 AAGTAATTTAATTGA GGAATCATATAAGA GTTTATT TCTTATATGATTCC TTTTAAGTTTATTAG CLK_1172 1967294 - 1967157 - | hypothetical protein TERM 2807 1968330 - 1968353 + H 71 -8.2 -3.10945 | opp_overlap 1968331, overlap 1968329 ATATAGAATATTATA ATCGCGAAAT ATAA ATTTCGCGAA GTTGTTGTTATTTTA TERM 2808 1968352 - 1968331 - H 95 -11.7 -3.55842 | opp_overlap 1968330 1968329 TATAGAATATTATAA TCGCGAAAT ATAA ATTTCGCGA AGTTGTTGTTATTTT CLK_1173 1968393 - 1969373 + | phage integrase family site specific recombinase CLK_1174 1970157 - 1969684 - | hypothetical protein lexA 1970455 - 1971060 + | LexA repressor CLK_1176 1972540 - 1971257 - | aluminum resistance protein TERM 2809 1971837 - 1971856 + gT 76 -7.8 -3.91196 | overlap 1971839 CCTGCTACTAAATCT GCGCCAAC GTCC GTTGGCTC TTTAATATCTATAAA TERM 2810 1971839 - 1971854 + gT 79 -9 -3.54089 | overlap 1971837 TGCTACTAAATCTGC GCCAAC GTCC GTTGGC TCTTTAATATCTATA CLK_1177 1972616 - 1972500 - | hypothetical protein TERM 2811 1972646 - 1972626 - R 87 -6.2 -5.80248 | opp_overlap 1972626 TAACATATAAAAAAA GAATAGGC AATTA ACCTATTC TTTATCTTTATAATC hfq 1972898 - 1972641 - | RNA chaperone Hfq miaA 1973919 - 1972984 - | tRNA delta(2)-isopentenylpyrophosphate transferase CLK_1180 1975936 - 1973936 - | DNA mismatch repair protein MutL TERM 2812 1974025 - 1974049 + g 88 -3 -6.08342 | AAGTATATGGATTAT TTAATATAAG CATGT CTTCTATTAA TTTTTTTATTTCTTC TERM 2813 1974913 - 1974929 + g 79 -8.1 -3.88137 | opp_overlap 1974913 1974912 1974910 CATATATATTAATAT CTTCTTT ATT AAAGAAG TTTGTAAAGGATTCT mutS 1978880 - 1976082 - | DNA mismatch repair protein MutS TERM 2814 1977841 - 1977857 + g 74 -6.7 -4.32951 | opp_overlap 1977856, overlap 1977856 TTTCCCACTATTCGT TCTATAT CAT ATATAGA TTTTAAATCTTCTTT TERM 2815 1978924 - 1978951 + r 72 -8.6 -3.20906 | opp_overlap 1978912 1978930, overlap 1978918 1978930 AAATTTAATCTTTTA AAAAAAGCTCTT ATTC AAGAGCTTTTTA ATTTATATTTAAATT TERM 2816 1978945 - 1978930 - R 100 -7.6 -5.41746 | opp_overlap 1978930 1978924 AATCTTTTAAAAAAA GCTCTT ATTC AAGAGC TTTTTAATTTATATT TERM 2817 1978930 - 1978945 + r 90 -7.6 -5.08367 | opp_overlap 1978930, overlap 1978924 AATCTTTTAAAAAAA GCTCTT ATTC AAGAGC TTTTTAATTTATATT miaB 1980312 - 1978960 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 2818 1980612 - 1980586 - H 89 -9 -4.64846 | opp_overlap 1980586 TTATAAATGACAAAA TTATCATTAAAC GTT ATTTAATGATAA TTTATGACAAAATAT TERM 2819 1980586 - 1980612 + H 78 -8.3 -3.86524 | opp_overlap 1980586 TTATAAATGACAAAA TTATCATTAAA CGTTA TTTAATGATAA TTTATGACAAAATAT TERM 2820 1980669 - 1980683 + H 78 -4.4 -5.51046 | overlap 1980680 CATCACTGGATTTTT TTTAAA TTT TTTAAA TTTTTTATATATTTA CLK_1183 1980784 - 1981974 + | aminotransferase, classes I and II TERM 2821 1982010 - 1982057 + F 90 -11.7 -3.04269 | opp_overlap 1982010 1982014, overlap 1982014 ACTTACTAGATAAAA TAAATTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGATTTA TGTGTATGATGTAAA TERM 2822 1982057 - 1982010 - f 79 -7.3 -4.57755 | opp_overlap 1982010 1982014, overlap 1982014 ACTTACTAGATAAAA TAAATTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGATTTA TGTGTATGATGTAAA TERM 2823 1982014 - 1982053 + F 79 -8.1 -4.18367 | opp_overlap 1982010 1982014, overlap 1982010 ACTAGATAAAATAAA TTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGA TTTATGTGTATGATG CLK_1184 1982059 - 1982220 + | hypothetical protein aspB 1982275 - 1983465 + | aspartate aminotransferase TERM 2824 1983472 - 1983488 + T 95 -7.3 -5.8901 | opp_overlap 1983472 AACAAATAAAAAAAA TAACCCT TTT GGGGTTA TTTTTTATTTTATGT TERM 2825 1983488 - 1983472 - T 100 -6.6 -6.32017 | opp_overlap 1983472 AACAAATAAAAAAAA TAACCC TTTTG GGGTTA TTTTTTATTTTATGT TERM 2826 1983501 - 1983519 + T 70 -7.6 -3.36868 | overlap 1983499 1983498 TTATTTTTTATTTTA TGTATTTA TTA TAAATACA TGCTTTTCTTTATAT CLK_1186 1984364 - 1983498 - | acetyltransferase TERM 2827 1983754 - 1983779 + g 73 -9.1 -2.63089 | overlap 1983754 1983752 TACCCTATATATTCA TCATCCTTCTT TATA AAGAAGGATGC ATCTTTAACATAATA CLK_1187 1985504 - 1984446 - | putative spore coat protein TERM 2828 1984850 - 1984837 - G 79 -5.3 -5.18726 | opp_overlap 1984837 TTTTGATAATAAAAA CTATG ATGG CATAG AGTTTTATTTGTTTG TERM 2829 1984932 - 1984908 - G 73 -5.7 -4.57569 | opp_overlap 1984913, overlap 1984909 TGATTTGTTTAAAAA GGAAAGTGCTA CCA TAGCCCTTTCA TAAAAGCTATCTATA TERM 2830 1984931 - 1984909 - G 78 -9.2 -3.3422 | opp_overlap 1984913, overlap 1984908 GATTTGTTTAAAAAG GAAAGTGCTA CCA TAGCCCTTTC ATAAAAGCTATCTAT TERM 2831 1985692 - 1985650 - R 83 -6.1 -5.36965 | gap 1, opp_overlap 1985650 1985655, overlap 1985655 1985684 TAAGATTATAAAAAA TAAAATATATGTATTA-ATA TTTT CATCTAATACATATACTTTA TACATTTAAATTATA TERM 2832 1985687 - 1985655 - R 75 -3.8 -5.49579 | gap 1, opp_overlap 1985655 1985650, overlap 1985650 1985684 TTATAAAAAATAAAA TATATGTATTA-ATA TTTT CATCTAATACATATA CTTTATACATTTAAA TERM 2833 1985739 - 1985719 - R 75 -7.1 -4.27465 | opp_overlap 1985719, overlap 1985709 1985716 TATAATTTAAAATAA TATTTATTT TTA AAATAAATA TTTAAACAATATTAA CLK_1188 1987667 - 1985751 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein cmk 1988385 - 1987732 - | cytidylate kinase aroH 1988832 - 1988461 - | chorismate mutase TERM 2834 1988764 - 1988782 + g 76 -9 -3.492 | opp_overlap 1988762 1988761, overlap 1988762 TTCTGAGAAAAGTTT TATTGAAG CTT CTTCAATA TATTTCACTTCATTT CLK_1191 1990055 - 1988832 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 2835 1989228 - 1989261 + g 73 -9.1 -2.53089 | opp_overlap 1989244, overlap 1989227 1989226 TTTAAAATCTTTTTG TATTCTTTCATCTAA ATCA TTAGATGAAAGAGCA GGTTTTAAATTTATG TERM 2836 1990294 - 1990341 + r 73 -8 -3.67976 | opp_overlap 1990294 1990307, overlap 1990307 TTTATAAAAATATAC TAAAAACGAAAAAGAGGCTTGA TAAC TCAAACCTCTTTTTTATTTATA TTTAAGATTAATACC TERM 2837 1990341 - 1990294 - R 79 -10.2 -2.75877 | opp_overlap 1990294 1990307, overlap 1990307 TTTATAAAAATATAC TAAAAACGAAAAAGAGGCTTGA TAAC TCAAACCTCTTTTTTATTTATA TTTAAGATTAATACC TERM 2838 1990307 - 1990328 + r 93 -7.3 -5.7827 | opp_overlap 1990294 1990307, overlap 1990294 ACTAAAAACGAAAAA GAGGCTTGA TAAC TCAAACCTC TTTTTTATTTATATT TERM 2839 1990328 - 1990307 - R 100 -9.5 -5.1971 | opp_overlap 1990307 1990294, overlap 1990294 ACTAAAAACGAAAAA GAGGCTTGA TAAC TCAAACCTC TTTTTTATTTATATT gluD 1991614 - 1990349 - | glutamate dehydrogenase, NAD-specific TERM 2840 1990587 - 1990603 + g 88 -5.9 -5.52079 | TTAGTTAATATGTCT GGAGTAA CTG TTATTCC TTTTTCTTTTAATAT TERM 2841 1990968 - 1990978 + g 79 -5.4 -5.25893 | CCTATACCTTGGATA GCTA ATT TAGC TTTTTTCATATCTAT TERM 2842 1991806 - 1991788 - R 73 -2.5 -5.72118 | gap 1, opp_overlap 1991788, overlap 1991791 AAAAAACAGAAAAAA GAGGT-AT AAAA ATGACCTC TTTTTTACACAAGCT CLK_1193 1992732 - 1991848 - | RpiR family transcriptional regulator TERM 2843 1992785 - 1992829 + r 73 -6.8 -4.32951 | gap 1 ATGCATTATCTATTT CAGTT-TATCATCTATTGAAA ACTT TATCAATAGATGATGCAATTG TTTGTTAATTGAACT TERM 2844 1992943 - 1992972 + r 74 -5.1 -5.17054 | opp_overlap 1992947 TCATTGAAGCGACTA TTAAGAGTATAGT TATG ACCATACCCTTAA TTTTTTAGATATTAT TERM 2845 1993017 - 1992996 - R 73 -7.5 -3.77464 | opp_overlap 1992996 ATATTATTCACCAAA TATAGTTTT ACAT AAAACTATA TTTTTGAAATTATTT TERM 2846 1992996 - 1993017 + r 83 -7.5 -4.7153 | opp_overlap 1992996 ATATTATTCACCAAA TATAGTTTT ACAT AAAACTATA TTTTTGAAATTATTT rluB 1993824 - 1993114 - | ribosomal large subunit pseudouridine synthase B CLK_1195 1993926 - 1994039 + | hypothetical protein TERM 2847 1994068 - 1994092 + T 73 -8.7 -2.85763 | opp_overlap 1994068, overlap 1994065 1994065 TACTAATTTAGGCAA TGTATTAGCTC CAT GAGGTAATACA TAAGTTTTTAGGTGT TERM 2848 1994092 - 1994068 - T 74 -8.7 -3.10409 | opp_overlap 1994068 1994065 1994065 TACTAATTTAGGCAA TGTATTAGCTC CAT GAGGTAATACA TAAGTTTTTAGGTGT CLK_1196 1995339 - 1994050 - | hypothetical protein CLK_1197 1996717 - 1995437 - | hypothetical protein TERM 2849 1996262 - 1996274 + g 85 -3.5 -5.67063 | GTTTTCCTTTTGGTA TAATA TTT TATTA TTTTTTTCTACTAAA TERM 2850 1996775 - 1996802 + r 78 -8.6 -3.88787 | opp_overlap 1996775 1996780, overlap 1996780 1996793 ATAATTCTAATTAAA TCAAAGCTTTAT TAGA ATTAAGCTTTGA TTTATAAAAATATAG TERM 2851 1996802 - 1996775 - R 78 -8.6 -3.9377 | opp_overlap 1996775 1996780 1996793, overlap 1996780 ATAATTCTAATTAAA TCAAAGCTTTAT TAGA ATTAAGCTTTGA TTTATAAAAATATAG TERM 2852 1997000 - 1996980 - R 100 -9 -5.71712 | opp_overlap 1996980 1996979 1996982 TTGCATATAAAAAAA CACAGGCC CATAT AGCCTGTG CTTTGGTCGGTTTAA CLK_1198 1998415 - 1997012 - | glycosyl transferase, group 2 family protein TERM 2853 1997537 - 1997551 + g 81 -2.8 -5.68039 | opp_overlap 1997537, overlap 1997538 TAGGGCCACAAAACT TCTTTC TTT GAAAGC TTTTTTTATGAGTTT CLK_1199 1998785 - 1998976 + | hypothetical protein TERM 2854 1999075 - 1999021 - f 71 -5.3 -4.60073 | gap 1, opp_overlap 1999022 1999037 1999039, overlap 1999022 1999026 1999037 TATATAATTATAAAA CTAAACAAAGCAAAAATGCCCGCTGT TTTT ATAGCGGGTATTTTTG-TTTTTTTAT TTCCTCATTGAGTAT TERM 2855 1999022 - 1999074 + F 100 -15.4 -3.84961 | gap 1, opp_overlap 1999021 1999022 1999026 1999037, overlap 1999037 1999039 ATATAATTATAAAAC TAAACAAAGCAAAAATGCCCGCTGT TTTT ATAGCGGGTATTTTTGTTTT-TTTA TTTCCTCATTGAGTA TERM 2856 1999074 - 1999022 - f 77 -8.8 -3.34959 | gap 1, opp_overlap 1999022 1999037 1999039, overlap 1999021 1999026 1999037 ATATAATTATAAAAC TAAACAAAGCAAAAATGCCCGCTGT TTTT ATAGCGGGTATTTTTG-TTTTTTTA TTTCCTCATTGAGTA TERM 2857 1999071 - 1999026 - f 78 -7.7 -4.29391 | opp_overlap 1999022 1999037 1999039, overlap 1999022 1999021 1999037 AATTATAAAACTAAA CAAAGCAAAAATGCCCGCTGT TTTT ATAGCGGGTATTTTTGTTTTT TTATTTCCTCATTGA TERM 2858 1999037 - 1999060 + F 100 -9.6 -5.89659 | opp_overlap 1999037 1999026 1999022 1999021, overlap 1999022 1999039 TAAACAAAGCAAAAA TGCCCGCTGT TTTT ATAGCGGGTA TTTTTGTTTTTTTAT TERM 2859 1999060 - 1999037 - f 74 -5.2 -5.13137 | opp_overlap 1999022 1999037 1999039, overlap 1999026 1999022 1999021 TAAACAAAGCAAAAA TGCCCGCTGT TTTT ATAGCGGGTA TTTTTGTTTTTTTAT TERM 2860 1999039 - 1999058 + F 100 -10 -4.51984 | opp_overlap 1999037 1999026 1999022 1999021, overlap 1999037 1999022 AACAAAGCAAAAATG CCCGCTGT TTTT ATAGCGGG TATTTTTGTTTTTTT TERM 2861 1999235 - 1999221 - f 76 -2.2 -5.9003 | AAATCAATAAAAAAA TTTCAT ATT ATAAAA AAATATTATGGTATT TERM 2862 1999313 - 1999345 + F 95 -11 -3.55801 | opp_overlap 1999313 1999333 AAAAAGTCATTATAA TATTATTACATAAT GCTAA ATTATGTAATAATA TTTAGGGGGATTAGT TERM 2863 1999345 - 1999313 - f 93 -11 -3.4745 | opp_overlap 1999313, overlap 1999333 AAAAAGTCATTATAA TATTATTACATAAT GCTAA ATTATGTAATAATA TTTAGGGGGATTAGT CLK_1200 1999364 - 2001385 + | methyl-accepting chemotaxis protein TERM 2864 2001433 - 2001390 - T 100 -24.4 -3.35867 | opp_overlap 2001390 2001397 2001430, overlap 2001397 TTAAGCTTTAATTAA TATAAAATGGGACCTAGATT AAAA AATCTAGGTCCCATTTTATA TTCCTATATATATTA TERM 2865 2001390 - 2001433 + T 100 -24.4 -3.37727 | opp_overlap 2001390 2001397, overlap 2001397 2001430 TTAAGCTTTAATTAA TATAAAATGGGACCTAGATT AAAA AATCTAGGTCCCATTTTATA TTCCTATATATATTA TERM 2866 2001426 - 2001397 - T 100 -18.1 -4.73864 | opp_overlap 2001397 2001390, overlap 2001390 TTAATTAATATAAAA TGGGACCTAGATT AAAA AATCTAGGTCCCA TTTTATATTCCTATA TERM 2867 2001397 - 2001426 + T 100 -18.1 -4.7219 | opp_overlap 2001390 2001397, overlap 2001390 TTAATTAATATAAAA TGGGACCTAGATT AAAA AATCTAGGTCCCA TTTTATATTCCTATA CLK_1201 2002115 - 2001429 - | putative cytochrome c-type biogenesis protein CLK_1202 2002548 - 2002117 - | thioredoxin family protein TERM 2868 2002632 - 2002587 - R 81 -10.8 -2.66977 | opp_overlap 2002587 2002593 2002596, overlap 2002585 2002593 TATAATGTAAAAATT TCAAAATAACCTTCAAAGAA TATAAT TTCTCTGAAGGCTATTTCAA TTTTAACATACAATT TERM 2869 2002626 - 2002593 - R 95 -9.8 -4.31329 | opp_overlap 2002587 2002593 2002596, overlap 2002587 2002585 GTAAAAATTTCAAAA TAACCTTCAAAGAA TATAAT TTCTCTGAAGGCTA TTTCAATTTTAACAT CLK_1203 2003499 - 2002663 - | carbon-nitrogen family hydrolase CLK_1204 2004172 - 2003618 - | hypothetical protein TERM 2870 2004266 - 2004223 - H 85 -10.8 -3.07895 | opp_overlap 2004222 2004219 2004231 2004238, overlap 2004231 2004238 TGCATTTTTAATATA TTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAA GTTATTTGTTTATAG TERM 2871 2004231 - 2004258 + H 79 -8.8 -3.71353 | opp_overlap 2004231 2004223 2004238, overlap 2004222 2004219 2004238 TAATATATTCTACAA TTAAAAATAAAA GTCC TTTTATTTTTAA TTGTTAAAGTTATTT TERM 2872 2004258 - 2004231 - H 77 -8.8 -3.36648 | opp_overlap 2004222 2004219 2004231 2004238, overlap 2004223 2004238 TAATATATTCTACAA TTAAAAATAAAA GTCC TTTTATTTTTAA TTGTTAAAGTTATTT TERM 2873 2004855 - 2004873 + G 83 -7.6 -4.55673 | opp_overlap 2004854 2004859, overlap 2004859 AAGATAGTAAAGGAG CAAATAAT ATA ATTATTTG TTTTATAATGTCTTT CLK_1205 2004584 - 2006017 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2874 2006041 - 2006094 + T 100 -14.5 -3.34236 | gap 1, opp_overlap 2006041 2006042 2006047, overlap 2006042 2006047 ATACTAAAGATTAAA CTAAAAGGTTATAACTT-TGAGAATA TTA TATTCTTAGAAGTTATAACCTTTTAA TTATAAAGTAAATTT TERM 2875 2006094 - 2006041 - T 100 -14.5 -4.03321 | gap 1, opp_overlap 2006041 2006042 2006047, overlap 2006042 2006047 ATACTAAAGATTAAA CTAAAAGGTTATAACTT-TGAGAATA TTA TATTCTTAGAAGTTATAACCTTTTAA TTATAAAGTAAATTT TERM 2876 2006093 - 2006042 - T 100 -15.8 -3.00908 | gap 1, opp_overlap 2006041 2006042 2006047, overlap 2006041 2006047 TACTAAAGATTAAAC TAAAAGGTTATAACTT-TGAGAATA TTA TATTCTTAGAAGTTATAACCTTTTA ATTATAAAGTAAATT TERM 2877 2006042 - 2006093 + T 100 -18 -2.6006 | gap 1, opp_overlap 2006042 2006041 2006047, overlap 2006041 2006047 TACTAAAGATTAAAC TAAAAGGTTATAACTT-TGAGAATA TTA TATTCTTAGAAGTTATAACCTTTTA ATTATAAAGTAAATT TERM 2878 2006088 - 2006047 - T 100 -11.3 -4.61284 | gap 1, opp_overlap 2006042 2006041 2006047, overlap 2006042 2006041 AAGATTAAACTAAAA GGTTATAACTT-TGAGAATA TTA TATTCTTAGAAGTTATAACC TTTTAATTATAAAGT TERM 2879 2006047 - 2006088 + T 100 -13.5 -4.49389 | gap 1, opp_overlap 2006047 2006042 2006041, overlap 2006042 2006041 AAGATTAAACTAAAA GGTTATAACTT-TGAGAATA TTA TATTCTTAGAAGTTATAACC TTTTAATTATAAAGT pcaC 2006499 - 2006155 - | 4-carboxymuconolactone decarboxylase CLK_1207 2007388 - 2006867 - | putative acetyltransferase TERM 2880 2007522 - 2007570 + r 100 -10 -5.3658 | gap 1, opp_overlap 2007525 2007533, overlap 2007525 2007533 TTATATTATATTTAG AAATATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATACTA TTTTATTTTTCTAAT TERM 2881 2007567 - 2007525 - R 100 -16.1 -3.95787 | gap 1, opp_overlap 2007525 2007522 2007533, overlap 2007533 TATTATATTTAGAAA TATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATA CTATTTTATTTTTCT TERM 2882 2007525 - 2007567 + r 100 -16.1 -3.1503 | gap 1, opp_overlap 2007525 2007533, overlap 2007522 2007533 TATTATATTTAGAAA TATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATA CTATTTTATTTTTCT TERM 2883 2007560 - 2007533 - R 100 -15.8 -4.31166 | opp_overlap 2007533 2007525 2007522, overlap 2007525 TTAGAAATATAGAAA TACCACAAGGAA TATA TTCCTTGTGGTA TTTTATACTATTTTA TERM 2884 2007533 - 2007560 + r 100 -15.8 -4.60713 | opp_overlap 2007525 2007533, overlap 2007525 2007522 TTAGAAATATAGAAA TACCACAAGGAA TATA TTCCTTGTGGTA TTTTATACTATTTTA CLK_1208 2008067 - 2007573 - | putative lipoprotein CLK_1209 2008612 - 2008301 - | hypothetical protein CLK_1210 2008822 - 2008679 - | hypothetical protein CLK_1211 2008956 - 2009198 + | hypothetical protein CLK_1212 2009201 - 2010925 + | sensory box-containing [Fe] hydrogenase CLK_1213 2010922 - 2012091 + | sporulation domain-containing protein CLK_1214 2012225 - 2013964 + | sensory box-containing [Fe] hydrogenase hypE 2015435 - 2014431 - | hydrogenase expression/formation protein HypE TERM 2885 2015331 - 2015341 + g 70 -4 -4.90079 | TGCAGAATCTATACC TTCT ATG AGAA TTTTATTATTAAAAT hypD 2016675 - 2015602 - | hydrogenase expression/formation protein HypD CLK_1217 2016895 - 2016668 - | hypothetical protein hypF 2019296 - 2016858 - | [NiFe] hydrogenase maturation protein HypF CLK_1219 2019450 - 2019280 - | hypothetical protein CLK_1220 2019688 - 2019533 - | hypothetical protein CLK_1221 2020323 - 2019808 - | heme/steroid binding domain-containing protein CLK_1222 2020896 - 2020480 - | hydrogenase maturation protease hupL 2022344 - 2020929 - | [Ni/Fe] hydrogenase, large subunit hupS 2023318 - 2022446 - | [Ni/Fe] hydrogenase, small subunit TERM 2886 2022771 - 2022793 + g 72 -8.4 -3.29332 | opp_overlap 2022759 2022756 2022771 2022774, overlap 2022769 2022768 2022772 GTACCTACCACCCAA TCAGGATGAC AAG GACATCCTGG TAATTTTATTACTTC TERM 2887 2022772 - 2022792 + g 76 -9.7 -2.56514 | opp_overlap 2022759 2022756 2022771 2022774, overlap 2022771 2022769 2022768 TACCTACCACCCAAT CAGGATGAC AAG GACATCCTG GTAATTTTATTACTT CLK_1225 2023602 - 2024303 + | TraX family protein TERM 2888 2024445 - 2024399 - f 73 -7.1 -4.12532 | gap 2, opp_overlap 2024400, overlap 2024400 2024403 TTTCGGATATAGAAA GTTAGGTAGGGTTAATATTTT TTTACTT AAAATATTAACCCTAC-T-AC ATATAATAAATAAAT TERM 2889 2024443 - 2024403 - f 86 -11.5 -2.74987 | opp_overlap 2024400, overlap 2024399 2024400 GGATATAGAAAGTTA GGTAGGGTTAATATTTT TTTACTT AAAATATTAACCCTACT ACATATAATAAATAA TERM 2890 2024514 - 2024504 - f 72 -4 -5.34555 | TTATATTAGAAAAAA CTTT AAA AAAG CATTGTAGTTATACG TERM 2891 2024902 - 2024862 - g 95 -11.3 -3.84712 | opp_overlap 2024862, overlap 2024870 GAAGTTGATAGCAAA GAGAAAAAGCACCCATCCT CCA AAGATTAGTGCCTTTTCCC TTGTTTAACATATTT CLK_1226 2024724 - 2024891 + | hypothetical protein TERM 2892 2024894 - 2024870 - T 78 -5.7 -5.22289 | opp_overlap 2024862, overlap 2024862 TAGCAAAGAGAAAAA GCACCCATCCT CCA AAGATTAGTGC CTTTTCCCTTGTTTA TERM 2893 2025018 - 2025042 + T 100 -13.7 -4.54821 | overlap 2025010 AAACGTTCTAGGATC GGCTTAGTGTT CTC AGCACTAAGCC TTTTCTAATTAGAAT TERM 2894 2025410 - 2025424 + T 81 -7.2 -4.76193 | TTATATTAATTATTT TCTATG AAA CATAGA TTTTATATTATCATT carB 2028775 - 2025569 - | carbamoyl-phosphate synthase, large subunit carA 2029852 - 2028803 - | carbamoyl-phosphate synthase, small subunit TERM 2895 2029968 - 2029923 - H 100 -13.1 -5.08255 | gap 1, opp_overlap 2029923 ATTTTTAAAACAAAA GGGAAATAAAAAGATTTATGTT TAA AAAATAA-TCTTTTTATTTCCC TTTATATAAATTTTA TERM 2896 2029923 - 2029968 + H 100 -13.1 -4.12901 | gap 1, opp_overlap 2029923 ATTTTTAAAACAAAA GGGAAATAAAAAGATTTATGTT TAA AAAATAA-TCTTTTTATTTCCC TTTATATAAATTTTA TERM 2897 2030064 - 2030086 + H 76 -2.8 -5.84381 | TCTCACAGGACCAAT TTAAAGTGTA TTC TTTACTTTAA TTTTTTTATTAATCA CLK_1229 2030369 - 2030536 + | hypothetical protein TERM 2898 2030539 - 2030515 - f 78 -5.7 -5.22289 | opp_overlap 2030509 TAGCAAAGAGAAAAA GCACCCATCCT CCA AAGATTAGTGC CTTTTTCCTTGTTTA TERM 2899 2030663 - 2030687 + F 100 -13.7 -4.54821 | overlap 2030655 AAACGTTCTAGGATC GGCTTAGTGTT CTC AGCACTAAGCC TTTTCTAATTAGGAT CLK_1230 2031026 - 2031394 + | daunorubicin resistance ATP-binding protein DrrA TERM 2900 2031623 - 2031657 + T 77 -6.6 -4.68456 | gap 1, opp_overlap 2031619 2031620 2031623 TCATAATGAAAGCTA GAGGAT-GCTTTGAA ATAAAA TTCAAAGCCACCCTC TTCTTTTTTAATCAT TERM 2901 2031657 - 2031623 - T 72 -8.8 -2.72436 | gap 1, opp_overlap 2031623, overlap 2031619 2031620 TCATAATGAAAGCTA GAGGAT-GCTTTGAA ATAAAA TTCAAAGCCACCCTC TTCTTTTTTAATCAT TERM 2902 2032030 - 2032006 - T 81 -5.7 -5.3321 | AATTAATAACAAAAA CAGCCAGCTTT AAT AACACTGACTG TTTTTCTAGATACAT CLK_1231 2033664 - 2032108 - | drug resistance ABC transporter ATP-binding protein CLK_1232 2035747 - 2034014 - | [Fe] hydrogenase TERM 2903 2034154 - 2034165 + g 74 -2.2 -5.51402 | TATCTTCTTTATATA GAGC TTCT GTTC TTTTTTTCAATATAT TERM 2904 2035024 - 2035044 + g 76 -7.6 -3.89346 | opp_overlap 2035023 2035024 2035026 ATTCTTCACCTAAAG CAGCTCTA ATAGC TGGAGCTG TTTGTACAATAACAA TERM 2905 2035343 - 2035365 + g 72 -6.4 -4.27117 | opp_overlap 2035342 2035348 ATCTATAGGATACAT TGAAACATCA CCT TGATATTTCA TTTCTCTTATACCCA CLK_1233 2037662 - 2035767 - | putative [Fe] hydrogenase, electron-transfer subunit TERM 2906 2036636 - 2036623 - G 73 -8.1 -3.38046 | GGCTTATTCCAAAGA CCAGC TTCT GCTGG GAATGGTGGTTTATA TERM 2907 2037222 - 2037251 + g 93 -8.1 -5.31519 | overlap 2037214 TCTTTTTTGTTTTTT GTAAAAAGACA TTTCATCT TGTCTTTTTAC TTTTTCTTTAAGTGT CLK_1234 2038153 - 2037674 - | putative Fe] hydrogenase, electron-transfer subunit TERM 2908 2038413 - 2038403 - R 87 -6.8 -5.37043 | ATTTTATATAAAAAA GAGG ATA CCTC AAAATGGCCTTAATT CLK_1235 2038543 - 2038412 - | hypothetical protein CLK_1236 2039959 - 2038772 - | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2909 2039998 - 2040031 + r 83 -11.3 -2.75481 | opp_overlap 2039999, overlap 2040011 CTCAAAACGCAAAAA ATCCTACAAATAATA ATTA TATTATTTGTAGGAG TCATTAGCATTACGC TERM 2910 2040030 - 2039999 - R 100 -14.8 -5.2696 | opp_overlap 2039998 2040011 TCAAAACGCAAAAAA TCCTACAAATAATA ATTA TATTATTTGTAGGA GTCATTAGCATTACG CLK_1237 2041099 - 2040221 - | ADP-ribosylglycohydrolase family protein TERM 2911 2042176 - 2042186 + G 72 -2.6 -5.35354 | TGATACCTGCTTTTA TAAT AAC ATTA TTTTTTAATTATATA CLK_1238 2041341 - 2042435 + | hypothetical protein dacB 2043681 - 2042545 - | D-alanyl-D-alanine carboxypeptidase CLK_1240 2043866 - 2044378 + | hypothetical protein TERM 2912 2044425 - 2044385 - f 70 -5.1 -4.81357 | opp_overlap 2044385 AGAGCATAAAATAAA TTTATTAATGAAATTTTTA AGA TAAAAAATCTATTAATAAA TTATATAAGGAGGTT TERM 2913 2044677 - 2044696 + G 75 -4.3 -5.1861 | overlap 2044672 GGTTCTGGAGCGGGT GTTACTG TAAAAC CAGTAGC TTTTTTAGTAATAAA ytfJ 2044446 - 2044886 + | sporulation protein YtfJ TERM 2914 2044920 - 2044888 - T 95 -10.8 -3.87551 | opp_overlap 2044893, overlap 2044893 ATCATGAAATCTAAA TAAAAGCCCCTA TTACATACT TAGGGGCTTTTA CACTATTTTTTAGTT TERM 2915 2044915 - 2044893 - T 78 -6.3 -4.96468 | opp_overlap 2044893, overlap 2044888 GAAATCTAAATAAAA GCCCCTA TTACATACT TAGGGGC TTTTACACTATTTTT TERM 2916 2044893 - 2044915 + T 70 -6.3 -4.24338 | opp_overlap 2044893 2044888 GAAATCTAAATAAAA GCCCCTA TTACATACT TAGGGGC TTTTACACTATTTTT scpB 2045528 - 2044947 - | segregation and condensation protein B scpA 2046267 - 2045521 - | segregation and condensation protein A CLK_1244 2046832 - 2046401 - | hypothetical protein TERM 2917 2046717 - 2046700 - G 70 -5.7 -4.20769 | opp_overlap 2046688, overlap 2046686 ATATTCTAACATAAA TATTAGA ATAA TCTAATA AAATATTTTCTAATC TERM 2918 2047023 - 2046999 - R 100 -11.6 -4.48299 | opp_overlap 2046999 TCATACTTAAATAAA GCTAACATGA AATAA TCATGTTAGC TTTTATCCTCCTTTT TERM 2919 2046999 - 2047023 + r 100 -11.6 -4.53607 | opp_overlap 2046999 TCATACTTAAATAAA GCTAACATGA AATAA TCATGTTAGC TTTTATCCTCCTTTT dacF 2048280 - 2047057 - | D-alanyl-D-alanine carboxypeptidase CLK_1246 2049125 - 2048403 - | hypothetical protein TERM 2920 2049218 - 2049269 + r 72 -8.4 -3.21998 | gap 1, opp_overlap 2049211 2049216, overlap 2049217 2049226 ATATATTACCTAACG TGTT-AGGACCATTAACCTATTTTA TAT TTAAATATGTTAATGGTCCTTAAGA ATTATTTTAATTTAA TERM 2921 2049226 - 2049260 + r 72 -8.8 -2.74286 | opp_overlap 2049216, overlap 2049218 2049217 CCTAACGTGTTAGGA CCATTAACCTATTTTA TAT TTAAATATGTTAATGG TCCTTAAGAATTATT CLK_1247 2050329 - 2049271 - | endonuclease/exonuclease/phosphatase family protein TERM 2922 2049716 - 2049732 + g 78 -9.5 -3.29263 | AATTCCTTGCCATTT TCTAGAG ATA CTCTAGA TTCTAAAAAACATCT TERM 2923 2050426 - 2050402 - R 100 -8.7 -5.52023 | opp_overlap 2050402 ATTATCAATAAAAAA CACAATAAACC TAA AGCTTATTGTG TAAATTTATATTTAT CLK_1248 2050719 - 2050471 - | hypothetical protein TERM 2924 2050682 - 2050694 + g 75 -4.9 -5.08601 | TTCGGGGCAATCTCA TTTCT AGG AGAAA TTTTTATTGCCATAA pdp 2052130 - 2050826 - | pyrimidine-nucleoside phosphorylase TERM 2925 2051551 - 2051565 + g 82 -4.3 -5.58074 | CTAAAACTATGGCAT TAGCT CCTGC AGCTA TTTTTTTGCTCATTA punA 2053231 - 2052416 - | purine nucleoside phosphorylase I, inosine and guanosine-specific xerD 2054144 - 2053269 - | tyrosine recombinase XerD TERM 2926 2054078 - 2054097 + g 81 -3.6 -5.54907 | CTCTTCTATAAGCCT CTAAAGTA TTTT TACTTAAG TTTTTCTTTTGTAAA CLK_1252 2054434 - 2054207 - | hypothetical protein CLK_1253 2055078 - 2054425 - | putative sporulation protein TERM 2927 2054573 - 2054546 - G 71 -2.1 -5.49568 | gap 1, overlap 2054554 AATGCAAAAGAAAAA GAATAGGAGGTA GCTCT TACC-CATATTC CATTTTGAAATCCCC CLK_1254 2055119 - 2055232 + | hypothetical protein CLK_1255 2055820 - 2055284 - | NUDIX family hydrolase TERM 2928 2055735 - 2055746 + g 72 -4.4 -5.07652 | overlap 2055726 GATTCTTTACCATTT GGTA ATTT TACC TTTTGTTTTACAACA TERM 2929 2056293 - 2056264 - R 73 -4.4 -5.20216 | opp_overlap 2056264 TAGAGCACTAAAAAA TAGAAGGGAT TAAACTTAGT ATCCCCTCTA TTTTCATATAAATTA CLK_1256 2057839 - 2056313 - | amino acid permease family protein TERM 2930 2058196 - 2058234 + H 95 -10.8 -3.86346 | opp_overlap 2058203, overlap 2058197 2058200 TAATCATGATCCTTC CTAATTATTATTTTTTAA TTA TTAAAAAATAATAATTAA TTTATAAACAAATAA TERM 2931 2058197 - 2058233 + H 100 -14.3 -2.91593 | opp_overlap 2058203, overlap 2058196 2058200 AATCATGATCCTTCC TAATTATTATTTTTTAA TTA TTAAAAAATAATAATTA ATTTATAAACAAATA TERM 2932 2058200 - 2058230 + H 95 -11.6 -3.6053 | opp_overlap 2058203, overlap 2058197 2058196 CATGATCCTTCCTAA TTATTATTTTTTAA TTA TTAAAAAATAATAA TTAATTTATAAACAA TERM 2933 2058227 - 2058203 - H 72 -8.9 -2.71144 | opp_overlap 2058200 2058197 2058196 GATCCTTCCTAATTA TTATTTTTTAA TTA TTAAAAAATAA TAATTAATTTATAAA TERM 2934 2058284 - 2058236 - H 80 -10 -2.7914 | gap 1, opp_overlap 2058235 2058252 2058281, overlap 2058243 2058252 AAAATAATAATTAAT TTATAAACAAATAAAAGCTCTAG ATTC CCAGAGCTTTC-TTTGTTTGTAA GATGATTTTACTTTT TERM 2935 2058277 - 2058243 - H 78 -8.1 -3.99898 | gap 1, opp_overlap 2058235 2058252, overlap 2058236 2058252 TAATTAATTTATAAA CAAATAAAAGCTCTAG ATTC CCAGAGCTTTC-TTTG TTTGTAAGATGATTT TERM 2936 2058269 - 2058252 - H 93 -7.7 -5.22481 | opp_overlap 2058252 2058235, overlap 2058243 2058236 TATAAACAAATAAAA GCTCTAG ATTC CCAGAGC TTTCTTTGTTTGTAA TERM 2937 2058252 - 2058269 + H 73 -5.5 -4.83246 | opp_overlap 2058243 2058236 2058252, overlap 2058235 TATAAACAAATAAAA GCTCTAG ATTC CCAGAGC TTTCTTTGTTTGTAA TERM 2938 2058702 - 2058681 - g 76 -8.8 -3.5032 | overlap 2058679 GTTGCATATGAAATA TTACCAGG TGAAAC CCTGGTAA AAGTCGCTGAAGCTA CLK_1257 2058453 - 2058893 + | hypothetical protein TERM 2939 2058930 - 2058959 + T 100 -15.2 -5.02476 | opp_overlap 2058935 2058938, overlap 2058935 ATATATAATTCCATG CAAAAGAACCCC TTTATT GGGGTTCTTTTG TTTTTTGGGAAGTAT TERM 2940 2058954 - 2058935 - T 89 -9.3 -4.19704 | opp_overlap 2058935 2058930, overlap 2058938 TAATTCCATGCAAAA GAACCCC TTTATT GGGGTTC TTTTGTTTTTTGGGA TERM 2941 2058935 - 2058954 + T 100 -9.3 -5.42198 | opp_overlap 2058935 2058938, overlap 2058930 TAATTCCATGCAAAA GAACCCC TTTATT GGGGTTC TTTTGTTTTTTGGGA CLK_1258 2059804 - 2059049 - | nlpC/P60 family protein CLK_1259 2062116 - 2061502 - | hypothetical protein TERM 2942 2062449 - 2062467 + r 70 -7.5 -3.30028 | TAGTTCTATGTGTAG GAAACAG CAATT CTGTTTC TTGATATACATCTTT spo0A 2064155 - 2063334 - | sporulation transcription factor Spo0A TERM 2943 2064297 - 2064259 - R 79 -4.9 -5.53079 | gap 1, opp_overlap 2064262 2064266 2064294, overlap 2064262 2064266 AAAATATATAAAAAA TAATAAAGTGTAAGATAC TCTA ATTTCTTACACTTTA-TA TGGTAACACATATAT TERM 2944 2064295 - 2064262 - R 93 -9.1 -4.78477 | opp_overlap 2064262 2064266 2064294, overlap 2064259 2064266 ATATATAAAAAATAA TAAAGTGTAAGATAC TCTA ATTTCTTACACTTTA TATGGTAACACATAT TERM 2945 2064291 - 2064266 - R 73 -5.5 -4.86216 | opp_overlap 2064266 2064262, overlap 2064262 2064259 ATAAAAAATAATAAA GTGTAAGATAC TCTA ATTTCTTACAC TTTATATGGTAACAC spoIVB 2065810 - 2064584 - | stage IV sporulation protein B TERM 2946 2066059 - 2066017 - R 100 -9.4 -5.60993 | opp_overlap 2066018, overlap 2066018 TTTTTCATAAAAAAA GGCTCTAAATAGATTGTGTT ATC AATACAATTTATTTAGAGCT TTTTTGAATTTTTAA TERM 2947 2066018 - 2066058 + r 100 -17.3 -5.30575 | opp_overlap 2066017 2066018 TTTTCATAAAAAAAG GCTCTAAATAGATTGTGTT ATC AATACAATTTATTTAGAGC TTTTTTGAATTTTTA TERM 2948 2066058 - 2066018 - R 100 -12.9 -3.95873 | opp_overlap 2066018, overlap 2066017 TTTTCATAAAAAAAG GCTCTAAATAGATTGTGTT ATC AATACAATTTATTTAGAGC TTTTTTGAATTTTTA metA 2067128 - 2066232 - | homoserine O-succinyltransferase TERM 2949 2066594 - 2066617 + g 100 -9.8 -4.36914 | opp_overlap 2066588 2066597, overlap 2066588 CATCAAAACCTTTAG TAAGTAAAGA ATTT TCTTTACTTA TTTTATGAGGAAACA hom 2068381 - 2067155 - | homoserine dehydrogenase CLK_1266 2069701 - 2068421 - | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein TERM 2950 2069784 - 2069765 - R 91 -7.2 -5.52384 | opp_overlap 2069765 TTTGTATTAAAAAAA GCCATTTC GTAA GAAATGAC TTTATTAACAGTTAC recN 2071703 - 2070000 - | DNA repair protein recN TERM 2951 2070737 - 2070753 + g 70 -3.7 -5.07486 | overlap 2070738 ATTCTATAATCTCTT TTATGGT TGT ACCATAC TTTTTCTTAAGAGTA TERM 2952 2071592 - 2071576 - G 77 -8.1 -3.76568 | opp_overlap 2071585, overlap 2071585 CCACCTAGAACATAA CTTATAG CAT CTATAAG AATAGATTTACCAGC TERM 2953 2071649 - 2071635 - G 74 -7.2 -4.01135 | TGTAAGAACATTAAA TCCTTT ATC AAAGGA TATAGACAATTCTTC argR 2072168 - 2071716 - | arginine repressor ppnK 2073015 - 2072170 - | ATP-NAD kinase CLK_1270 2073836 - 2073015 - | hemolysin A dxs 2075726 - 2073858 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 2954 2075562 - 2075552 - G 70 -4 -4.87807 | opp_overlap 2075554, overlap 2075554 CGAATACATTAAAAA TACT TAA AGTA AGTTCTACCACTCCT TERM 2955 2075648 - 2075628 - G 80 -7 -4.75372 | opp_overlap 2075628 2075624 2075646, overlap 2075646 ATTATCTATTAAAAA TTCTCTTA TCTCG TAAGAGAA TTGGTTTAATTCATT TERM 2956 2075628 - 2075648 + g 72 -7.7 -3.63141 | opp_overlap 2075628 2075646, overlap 2075624 2075646 ATTATCTATTAAAAA TTCTCTTAT CTC GTAAGAGAA TTGGTTTAATTCATT CLK_1272 2076296 - 2075727 - | hypothetical protein TERM 2957 2076450 - 2076431 - R 77 -8 -4.17048 | opp_overlap 2076428 TTTCCCGTAAAACAA TCAAAATG TCGC CATTTTGA CGGTTTCCCTTTAAT ispA 2077971 - 2077099 - | geranyltranstransferase xseB 2078311 - 2078096 - | exodeoxyribonuclease VII, small subunit xseA 2079610 - 2078405 - | exodeoxyribonuclease VII, large subunit TERM 2958 2079666 - 2079634 - R 93 -11.5 -3.13403 | opp_overlap 2079640, overlap 2079640 TCCTTTTTATTAATA TTAAAAGTGAAAAGC TAA GCTCTTCACTTTTTA AATATTTATTAATTT TERM 2959 2079640 - 2079660 + r 88 -8.3 -4.7889 | opp_overlap 2079634 2079640 TTATTAATATTAAAA GTGAAAAGC TAA GCTCTTCAC TTTTTAAATATTTAT TERM 2960 2079660 - 2079640 - R 100 -10.5 -4.44797 | opp_overlap 2079640, overlap 2079634 TTATTAATATTAAAA GTGAAAAGC TAA GCTCTTCAC TTTTTAAATATTTAT nusB 2080106 - 2079681 - | N utilization substance protein B TERM 2961 2079970 - 2079980 + g 78 -4 -5.4659 | TCTTTTAAATCTACA GATT CAT AATC TTTTTCTTTATCTTC TERM 2962 2080234 - 2080214 - R 100 -11.2 -4.12532 | opp_overlap 2080213 2080212 TTCTCTACATAGAAA CACCCTCT ACCTG AGAGGGTG CAATTATTTATTATT asp 2080640 - 2080245 - | alkaline shock protein CLK_1278 2081246 - 2080722 - | stage III sporulation protein AH CLK_1279 2081904 - 2081308 - | stage III sporulation protein AG TERM 2963 2081993 - 2082014 + r 78 -7.5 -4.29176 | opp_overlap 2081985 2081998, overlap 2081998 2082011 TATAATATACTTTTT TAAAATACA TATT TGTATTTTA TTTTAAATTGAATAT spoIIIAF 2082633 - 2082043 - | stage III sporulation protein AF CLK_1281 2083832 - 2082669 - | stage III sporulation protein AE CLK_1282 2084224 - 2083841 - | stage III sporulation protein AD CLK_1283 2084448 - 2084251 - | stage III sporulation protein AC CLK_1284 2085009 - 2084491 - | stage III sporulation protein AB CLK_1285 2085969 - 2085046 - | stage III sporulation protein AA TERM 2964 2086117 - 2086170 + r 73 -2.8 -5.77571 | gap 2, opp_overlap 2086112 2086128, overlap 2086128 TACAATATAATTTTT TGTATA--AAAAACACCCTATAAGAT TAAA ATCTTATAGGGTGTTTTAACTAATCA TTTTTATTTTTTAAT TERM 2965 2086157 - 2086128 - R 100 -16.7 -5.24129 | opp_overlap 2086128 2086117 TTTTTGTATAAAAAA CACCCTATAAGAT TAAA ATCTTATAGGGTG TTTTAACTAATCATT TERM 2966 2086128 - 2086157 + r 100 -16.7 -4.2231 | opp_overlap 2086128, overlap 2086117 TTTTTGTATAAAAAA CACCCTATAAGAT TAAA ATCTTATAGGGTG TTTTAACTAATCATT CLK_1286 2086583 - 2086164 - | hypothetical protein efp 2087181 - 2086624 - | translation elongation factor P aroQ 2087713 - 2087270 - | 3-dehydroquinate dehydratase, type II TERM 2967 2087361 - 2087374 + g 80 -2.4 -5.80248 | ACACCTAAGGAAGCT TCTG CAGTAA CAGA TTTTTTTCTATATTC TERM 2968 2087596 - 2087610 + g 78 -4.4 -5.4387 | TTAAATCTTCATTCT TAAAAT GTA ATTTTA TTTTTTGATTTATAT TERM 2969 2087797 - 2087830 + r 100 -9.2 -5.15634 | opp_overlap 2087829, overlap 2087796 ATCAAAACTTCACTT TATTTGCAAATAAT ATTATG GTTATTTGCAAATA TTTTTTCATAAAATA aroK 2088380 - 2087868 - | shikimate kinase CLK_1290 2089008 - 2088514 - | hypothetical protein CLK_1291 2089460 - 2089014 - | hypothetical protein TERM 2970 2089368 - 2089356 - G 70 -3.5 -5.14563 | opp_overlap 2089356 2089364 TGCTTTATTAAAAAA TATAA TAT TTATA GTTAATAGGATACTT CLK_1292 2090165 - 2089476 - | hypothetical protein TERM 2971 2089823 - 2089833 + g 80 -6.8 -4.80396 | CTATATTTTTACACT GTGC CAT GCAC TTTTTCAATATTTTA CLK_1293 2090639 - 2090193 - | putative lipoprotein CLK_1294 2091058 - 2090618 - | hypothetical protein TERM 2972 2091039 - 2091025 - G 70 -5.8 -4.28762 | opp_overlap 2091034 2091036, overlap 2091036 ATAATCCTATTAAAA TTTCTA TTA TAGAAA AACCTTTTCTCTTTA CLK_1295 2091501 - 2091055 - | hypothetical protein CLK_1296 2091934 - 2091482 - | hypothetical protein CLK_1297 2092559 - 2092155 - | putative pilin CLK_1298 2092885 - 2092745 - | general secretion pathway protein TERM 2973 2093072 - 2093034 - R 100 -11.4 -5.28561 | opp_overlap 2093034 AATACATAATAAAAA GAATGTCAAAAATATA ATTTAGG TATATCTTTGACATTC TTTTTATTTATATCT TERM 2974 2093034 - 2093072 + r 100 -9.2 -5.4433 | opp_overlap 2093034 AATACATAATAAAAA GAATGTCAAAAATATA ATTTAGG TATATCTTTGACATTC TTTTTATTTATATCT CLK_1299 2094789 - 2093080 - | hypothetical protein TERM 2975 2093290 - 2093276 - G 71 -8.6 -2.7361 | opp_overlap 2093275 TGAATTACAAATTTA GGAGAT TTA ATCTCC ATCTCATTAGCATAC TERM 2976 2094032 - 2094049 + g 70 -5.7 -4.24599 | TTTTCGAGTTCTTTC TTATATG TTTC CATATAA TTTAATTGTTTTCTT TERM 2977 2094534 - 2094544 + g 72 -4 -5.07011 | overlap 2094537 CTTCAACCTTATTAT CTTT TAA AAAG TTTTTGATTTCTATA CLK_1300 2095013 - 2094783 - | hypothetical protein CLK_1301 2095681 - 2095019 - | hypothetical protein CLK_1302 2095907 - 2095671 - | hypothetical protein TERM 2978 2096119 - 2096100 - R 70 -4.3 -5.00138 | opp_overlap 2096100, overlap 2096093 TAGGCAAATTAAAAA GACCTTC TAATTT GAAAGTC TTTTATAAATCATTA CLK_1303 2096992 - 2096138 - | hypothetical protein CLK_1304 2098049 - 2097063 - | hypothetical protein TERM 2979 2097908 - 2097937 + g 73 -5.8 -4.55446 | opp_overlap 2097908, overlap 2097903 2097935 2097935 CATAACAATCTATAA CTCCAGAGAAGA TAATTT TATTTTCTGGAG TTTTACTCTTTATTA CLK_1305 2098240 - 2098037 - | hypothetical protein CLK_1306 2099081 - 2098227 - | hypothetical protein TERM 2980 2098702 - 2098733 + g 83 -7.6 -4.57073 | opp_overlap 2098704 2098706 2098709, overlap 2098704 AATTTCTTTTGAGCT AATATAACTATTTT AGAG AAAATAGTTATATA TTTTTCAAGAGAATA TERM 2981 2098731 - 2098704 - G 81 -10.2 -3.05384 | opp_overlap 2098704 2098702, overlap 2098706 2098709 TTTCTTTTGAGCTAA TATAACTATTTT AGAG AAAATAGTTATA TATTTTTCAAGAGAA TERM 2982 2098704 - 2098731 + g 93 -10.2 -3.90048 | opp_overlap 2098704 2098706 2098709, overlap 2098702 TTTCTTTTGAGCTAA TATAACTATTTT AGAG AAAATAGTTATA TATTTTTCAAGAGAA TERM 2983 2098729 - 2098706 - G 70 -8.4 -3.08679 | opp_overlap 2098704 2098702, overlap 2098704 2098709 TCTTTTGAGCTAATA TAACTATTTT AGAG AAAATAGTTA TATATTTTTCAAGAG TERM 2984 2098962 - 2098948 - G 81 -2.9 -5.7946 | opp_overlap 2098948 TTTGTAAGAAAAAAA TCTAA TGTAC TTAGA TATCCTTGTAATTCT CLK_1307 2099542 - 2099168 - | transposase C for TERM 2985 2099482 - 2099496 + g 81 -2.9 -5.80951 | CTTTATCAACCTTCT CTAAA GTCAA TTTAG TTTTTTCTTTTGCAT CLK_1308 2101515 - 2099542 - | integrase TERM 2986 2100129 - 2100145 + g 83 -2.3 -5.83226 | opp_overlap 2100116, overlap 2100131 AGTGATATAATTTAT CATTAGA ATC TCTAATA TTTTTTTCTTCAATT TERM 2987 2100317 - 2100329 + g 79 -7.7 -4.33151 | ATTTCAGCAACTTTA TCCCT TAT AGGGA TTTTAAGTTGTGCTA CLK_1309 2102645 - 2101515 - | site-specific recombinase CLK_1310 2103802 - 2102798 - | general secretion pathway protein CLK_1311 2104681 - 2103947 - | general secretion pathway protein E TERM 2988 2104926 - 2104898 - R 79 -4.7 -5.4588 | opp_overlap 2104919 2104925, overlap 2104900 TAAAAGTAGAAAAAA TTTTTTGACGT ATTTTTG ACGTCAAAAGA AGAGTGGTAGAATAT TERM 2989 2104919 - 2104955 + r 75 -7.5 -3.99275 | opp_overlap 2104900 2104898, overlap 2104925 GACGTATTTTTGACG TCAAAAGAAGAGTGGTA GAA TATTGCTCTTCTTTTTA TTTACTATTATATCC TERM 2990 2104925 - 2104949 + r 87 -6.5 -5.37171 | opp_overlap 2104898, overlap 2104919 TTTTTGACGTCAAAA GAAGAGTGGTA GAA TATTGCTCTTC TTTTTATTTACTATT TERM 2991 2105024 - 2105006 - R 100 -7.5 -5.69473 | opp_overlap 2105006 2105001 TATATTATAAAAAAA CTCTAGA AATAA TCTAGAG TTTTCATTTACAAAT TERM 2992 2105006 - 2105024 + r 81 -7.5 -4.55128 | opp_overlap 2105006, overlap 2105001 TATATTATAAAAAAA CTCTAGA AATAA TCTAGAG TTTTCATTTACAAAT TERM 2993 2105185 - 2105206 + r 81 -7.3 -4.8622 | opp_overlap 2105173 2105185 2105188, overlap 2105205 AAATCCCATGCAAAA GAACCCC TTTTTATT GGGGTTC TTTTTGCTTAAGCAA TERM 2994 2105206 - 2105185 - R 75 -7.3 -4.20106 | opp_overlap 2105185 2105205, overlap 2105173 2105188 AAATCCCATGCAAAA GAACCCC TTTTTATT GGGGTTC TTTTTGCTTAAGCAA CLK_1312 2106218 - 2105343 - | hypothetical protein CLK_1313 2107176 - 2106187 - | hypothetical protein TERM 2995 2107189 - 2107221 + r 80 -10.1 -2.83343 | opp_overlap 2107215, overlap 2107194 2107201 2107205 CATTTCTTAATCCCC CCATATATTCTTTAA ATA TTATGGAATATATGG TATAATGATACATAT TERM 2996 2107201 - 2107249 + r 71 -5.7 -4.67697 | opp_overlap 2107215, overlap 2107194 2107189 2107205 CCCCCATATATTCTT TAAATATTATGGAATATATGGTA TAA TGATACATATTTCATAATATTTA TTTATTGTTTTAGAA TERM 2997 2107399 - 2107373 - R 100 -10.2 -6.23317 | AGAAAAATAAAAAAA GAGGTACTCCCA TTA CAGAAGTACCTC TAAAACTTATTTATT CLK_1314 2108230 - 2107406 - | 1,4-beta-N-acetylmuramidase TERM 2998 2108284 - 2108262 - R 85 -6.3 -5.61881 | opp_overlap 2108265 TTCTAAAAATAAAAA GAACAGAAC TATTT GCTCTGCTC TTTAATTTCTTTTTT CLK_1315 2108689 - 2108270 - | toxin secretion/phage lysis holin CLK_1316 2108910 - 2108770 - | hypothetical protein CLK_1317 2109106 - 2108912 - | hypothetical protein CLK_1318 2111795 - 2109126 - | hypothetical protein TERM 2999 2109976 - 2109990 + g 77 -10 -3.05022 | TGCATATCCTCGATA GTTGGG TTT CCCAAC TCTGTGTATCCGCAG CLK_1319 2113161 - 2111797 - | hypothetical protein TERM 3000 2112690 - 2112700 + g 70 -4 -4.85545 | overlap 2112676 CTCTAATGCTTTCAT TAGA TAC TCTA TTTTCTTCATTTAAT TERM 3001 2113088 - 2113040 - G 85 -8.5 -4.56914 | gap 1 CCAGTTAAATCAAAA GGGACACT-ATTCTGCACTAAA ATAATA TTTAATACAGAATTATTGTCCC CCTGTTTTAATCCTC CLK_1320 2114859 - 2113177 - | phage endopeptidase CLK_1321 2115521 - 2114844 - | putative phage tail protein CLK_1322 2118190 - 2115521 - | phage protein TERM 3002 2115746 - 2115781 + g 89 -4.2 -5.9362 | gap 1, overlap 2115748 2115749 AACTGTAGTTTTCAT TTTA-GCAGTAAGGTTT GAT AAATCTTTCTGCATAGA TTTTTTTATATTTTC CLK_1323 2118392 - 2118240 - | hypothetical protein TERM 3003 2118406 - 2118421 + r 70 -7.6 -3.38564 | opp_overlap 2118406 ACCCCATTTAAAAAA GCACTT ATAT AAGTGC TTATAAATAAATTTC TERM 3004 2118421 - 2118406 - R 90 -7.6 -5.09225 | opp_overlap 2118406 ACCCCATTTAAAAAA GCACTT ATAT AAGTGC TTATAAATAAATTTC CLK_1324 2118907 - 2118422 - | hypothetical protein TERM 3005 2118585 - 2118570 - G 71 -3.3 -5.2189 | opp_overlap 2118570, overlap 2118562 2118582 TTAATTACTAAAAAA GTTCT TAACTT AGAAC TTTTTTTAGTTCCAA TERM 3006 2118570 - 2118585 + g 78 -3.3 -5.63103 | opp_overlap 2118562 2118570 2118582 TTAATTACTAAAAAA GTTCT TAACTT AGAAC TTTTTTTAGTTCCAA CLK_1325 2119557 - 2118964 - | putative protein gp15 CLK_1326 2119901 - 2119557 - | hypothetical protein CLK_1327 2120410 - 2119901 - | hypothetical protein CLK_1328 2120845 - 2120411 - | hypothetical protein CLK_1329 2121186 - 2120842 - | hypothetical protein CLK_1330 2121596 - 2121186 - | hypothetical protein CLK_1331 2121858 - 2121598 - | hypothetical protein CLK_1332 2122875 - 2121904 - | prophage LambdaCh01, coat protein CLK_1333 2123527 - 2122895 - | hypothetical protein TERM 3007 2123168 - 2123148 - G 85 -8.4 -4.43307 | opp_overlap 2123148 2123147, overlap 2123145 TGCCCAATAAAATAA TCTACCAA TTGAC TTGGTAGA CCTTTTTCAGTGGCT TERM 3008 2123618 - 2123601 - R 80 -6.3 -5.19328 | opp_overlap 2123601 ATGGCATAATAAAAA GCCTTAG TTTC CTAAGAC TTTAATTAGATTATT TERM 3009 2123743 - 2123714 - R 83 -5.9 -5.4251 | opp_overlap 2123690 2123714 2123716 TTTATAGATAAAAAA GATTATATCTTAT ATAA AGAAGATATAACC TTTTTCTTTAATTTT TERM 3010 2123714 - 2123743 + r 72 -3.7 -5.43974 | opp_overlap 2123714, overlap 2123690 2123716 TTTATAGATAAAAAA GATTATATCTTAT ATAA AGAAGATATAACC TTTTTCTTTAATTTT CLK_1334 2124404 - 2123796 - | hypothetical protein TERM 3011 2124514 - 2124531 + r 70 -3.5 -5.4505 | CAATTACTTAACAAT TTAGGAT ATAT ATCTTAA TTTTTTATTAACAAA CLK_1335 2125335 - 2124613 - | hypothetical protein CLK_1336 2126603 - 2125335 - | SPP1 family phage portal protein TERM 3012 2126203 - 2126170 - G 85 -3.9 -5.66684 | opp_overlap 2126170 2126190 GAATGCATAAAAAAA GATATGTTACCAAAA TCAT CTATGGCAGCATATC CTTGTGTTGGTGGTA CLK_1337 2128403 - 2126607 - | hypothetical protein TERM 3013 2128436 - 2128457 + r 71 -7.4 -3.85786 | opp_overlap 2128436, overlap 2128439 2128439 TATTATAAATAAAAA GAACAAAC TAATTT GTTTGTTC TTTAGATATTTTACT TERM 3014 2128457 - 2128436 - R 90 -7.4 -5.40464 | opp_overlap 2128436 2128439 2128439 TATTATAAATAAAAA GAACAAAC TAATTT GTTTGTTC TTTAGATATTTTACT CLK_1338 2129529 - 2128486 - | hypothetical protein CLK_1339 2130278 - 2129616 - | resolvase CLK_1340 2130938 - 2130525 - | DNA-binding protein TERM 3015 2131003 - 2130979 - R 75 -3.6 -5.55769 | CTTTACAATAAAAAA GACACCTAGC TATTT ACTAAATGTC CTTTGCTTTATTTCC CLK_1341 2131544 - 2131101 - | hypothetical protein TERM 3016 2131598 - 2131566 - R 100 -13.7 -2.59748 | opp_overlap 2131566, overlap 2131562 TACCTCCATAATTCA GGTTACCTTTTTGAA GTC TTAAAAAAGGTAACC TTTTTAACATGCCTC TERM 3017 2131566 - 2131598 + r 100 -13.7 -4.62783 | opp_overlap 2131562 2131566 TACCTCCATAATTCA GGTTACCTTTTTGAA GTC TTAAAAAAGGTAACC TTTTTAACATGCCTC CLK_1342 2134423 - 2131832 - | DNA primase related protein CLK_1343 2135037 - 2134453 - | hypothetical protein TERM 3018 2134989 - 2135001 + g 72 -2.7 -5.4387 | opp_overlap 2134983 2134980, overlap 2134980 2134990 2134998 ATAAAATCATAAAGT TTTCT TTA AGAAG TTTTTTAATTTCTGT TERM 3019 2135083 - 2135101 + r 82 -4.6 -5.79595 | overlap 2135085 ATATCTTTGAAATGC GACTATTT TTT AAATAGCC TTTTTTCTTTTGAAG CLK_1344 2135210 - 2135085 - | threonyl-tRNA synthetase CLK_1345 2135556 - 2135239 - | hypothetical protein TERM 3020 2135612 - 2135622 + r 78 -6.8 -4.90296 | TCTGCTATTTGAATT GCGA TTA TCGC TTTTTATAAAATTTT CLK_1346 2135732 - 2135616 - | hypothetical protein CLK_1347 2135940 - 2135788 - | hypothetical protein CLK_1348 2136494 - 2135970 - | sugar-phospahte nucleotidyltransferase CLK_1349 2136971 - 2136561 - | single-strand binding protein family CLK_1350 2137601 - 2136975 - | hypothetical protein CLK_1351 2138328 - 2137615 - | hypothetical protein TERM 3021 2138251 - 2138282 + g 70 -8.8 -2.63631 | opp_overlap 2138244 2138256, overlap 2138256 CCAATCAATTCCACA CTCAAGCAGGAG TTTTTCTT CTCCTGCTTGAA TAATGTAACAATTAC CLK_1352 2139248 - 2138328 - | RecT family protein CLK_1353 2141187 - 2139250 - | hypothetical protein CLK_1354 2141342 - 2141190 - | hypothetical protein CLK_1355 2141683 - 2141351 - | hypothetical protein TERM 3022 2141742 - 2141761 + r 100 -6.4 -6.20267 | overlap 2141744 TTTAACTTAATTGTT TGGCTCCT GGCA GGGAGCTA TTTTTTTCTTTTTAA TERM 3023 2141744 - 2141759 + r 77 -6.8 -4.70159 | overlap 2141742 TAACTTAATTGTTTG GCTCCT GGCA GGGAGC TATTTTTTTCTTTTT CLK_1356 2142002 - 2141733 - | hypothetical protein CLK_1357 2142189 - 2142019 - | hypothetical protein CLK_1358 2142496 - 2142203 - | hypothetical protein CLK_1359 2143274 - 2142516 - | hypothetical protein CLK_1360 2143518 - 2143306 - | putative transcriptional regulator CLK_1361 2143755 - 2144357 + | transcriptional regulator CLK_1362 2144407 - 2144823 + | hypothetical protein TERM 3024 2145033 - 2145023 - f 73 -2.6 -5.74122 | opp_overlap 2145023 TATTATATAAAAAAA TATA TTA TATA TTGTCACACTTTTGT CLK_1363 2145382 - 2146455 + | phage integrase family site specific recombinase CLK_1364 2147222 - 2146500 - | general secretion pathway protein CLK_1365 2147499 - 2147371 - | hypothetical protein CLK_1366 2148668 - 2147595 - | putative lipoprotein dapF 2149490 - 2148669 - | diaminopimelate epimerase TERM 3025 2150416 - 2150403 - g 76 -3.9 -5.3658 | opp_overlap 2150403, overlap 2150406 ATTAGAAAAAGAAAA TAATC TAGA GATTA CTTTAGAAAACATGG TERM 3026 2151314 - 2151298 - g 80 -8.7 -3.83864 | opp_overlap 2151297 2151298 AAAACTTTAGAAGAA GCTGCCA CCT TAGCAGC CTTTTATAGTAAATC CLK_1368 2149744 - 2151474 + | fibronectin-binding protein truA 2151543 - 2152283 + | tRNA pseudouridine synthase A TERM 3027 2152499 - 2152460 - T 100 -19 -2.90615 | gap 1, opp_overlap 2152463 2152464, overlap 2152463 2152464 2152466 2152482 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTTAGAAGTCTGTTA ATAAGCTTTAGTGAG TERM 3028 2152495 - 2152463 - T 100 -16.5 -3.60151 | opp_overlap 2152463 2152464, overlap 2152460 2152464 2152466 2152482 TCTCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTTAGAAGTCT GTTAATAAGCTTTAG TERM 3029 2152463 - 2152496 + T 100 -16.3 -3.20747 | gap 1, opp_overlap 2152460 2152463 2152464 2152466 2152482, overlap 2152464 TCTCCTAAAGGATAA C-GACTTCTAAGGAGT AAA ACTCCTTAGAAGTCTG TTAATAAGCTTTAGT TERM 3030 2152464 - 2152494 + T 100 -20 -3.16288 | opp_overlap 2152463 2152460 2152464 2152466 2152482, overlap 2152463 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTTAGAAGTC TGTTAATAAGCTTTA TERM 3031 2152494 - 2152464 - T 100 -20 -2.75769 | opp_overlap 2152464 2152463, overlap 2152463 2152460 2152466 2152482 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTTAGAAGTC TGTTAATAAGCTTTA TERM 3032 2152492 - 2152466 - T 100 -16.8 -2.92144 | opp_overlap 2152464 2152463, overlap 2152464 2152463 2152460 2152482 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTTAGAAG TCTGTTAATAAGCTT TERM 3033 2152565 - 2152601 + T 87 -6.8 -5.38951 | opp_overlap 2152565 ATATTTAGTAGAAAA TACATGTAATAAATGC ATAAA GTGATTATTACATGTA TTTTTTATGTCAATT CLK_1370 2152838 - 2152611 - | hypothetical protein CLK_1371 2153250 - 2152873 - | HIT family protein TERM 3034 2154496 - 2154510 + G 73 -5.6 -4.58685 | TATATTCATGTAGAT GCTGCC TCT GGTGGC TTTTTCACCCCATTT TERM 3035 2154684 - 2154702 + G 74 -8.8 -3.2348 | opp_overlap 2154681 2154696 TGAAGTAAGTTATTT GGGTGGCA AAA TGCCAACC TTAGCTATTAATTTT CLK_1372 2153761 - 2155164 + | glutamate decarboxylase TERM 3036 2155345 - 2155312 - T 78 -9.5 -3.06605 | opp_overlap 2155312, overlap 2155305 2155329 AAATAGAATGACAGA CCGGTGGAGAAAACA ATGA TGAAGTCTCCACCGG TTATACAATTTTTAA TERM 3037 2155312 - 2155345 + T 82 -9.5 -3.44553 | opp_overlap 2155305 2155312 2155329 AAATAGAATGACAGA CCGGTGGAGAAAACA ATGA TGAAGTCTCCACCGG TTATACAATTTTTAA CLK_1373 2155816 - 2155475 - | hypothetical protein TERM 3038 2156318 - 2156340 + r 75 -5.8 -5.08015 | CTAATACTAAATTAC TTTTTAAATT TTG AATTTAGAAA TTTCTTTTTTCAATT CLK_1374 2158030 - 2156321 - | methyl-accepting chemotaxis protein TERM 3039 2156801 - 2156819 + g 80 -8.9 -3.72576 | overlap 2156793 TGCCTCTCCTGCCCT TGCAGCT TCAAT AGCTGCA TTTAATGCAAGAAGG TERM 3040 2157097 - 2157111 + g 70 -5.6 -4.254 | overlap 2157102 TTGCTGACATCTCTT CTGCTG AAG CCGCAG TTTCTTGCATATTAG TERM 3041 2158473 - 2158418 - R 100 -15.3 -4.01454 | opp_overlap 2158424, overlap 2158410 2158424 TGAAAAATAATATAA TTAAAATACTGCCTAAAAATAGAAA GCATAA CTTCTATTTTTAGACAGTATTTTTA ATAATAAATTAAGCT TERM 3042 2158424 - 2158467 + r 100 -11.4 -4.77438 | opp_overlap 2158418 2158424 ATAATATAATTAAAA TACTGCCTAAAAATAGAA AGCATAAC TTCTATTTTTAGACAGTA TTTTTAATAATAAAT TERM 3043 2158467 - 2158424 - R 100 -14.3 -4.57218 | opp_overlap 2158424, overlap 2158418 ATAATATAATTAAAA TACTGCCTAAAAATAGAAA GCATAA CTTCTATTTTTAGACAGTA TTTTTAATAATAAAT cloSI 2160074 - 2158500 - | clostripain CLK_1376 2160554 - 2161210 + | hypothetical protein CLK_1377 2161212 - 2161913 + | DNA-binding response regulator CLK_1378 2161903 - 2163813 + | sensor histidine kinase msrA 2164709 - 2164236 - | methionine-S-sulfoxide reductase CLK_1380 2165089 - 2165880 + | response regulator CLK_1381 2167500 - 2166040 - | sensor histidine kinase TERM 3044 2167152 - 2167164 + g 72 -4.9 -4.86954 | TATCTGTTTTATTTA TTGAT TCT ATCAA TTGTTTTTTATTCTT CLK_1382 2168186 - 2167497 - | DNA-binding response regulator CLK_1383 2169245 - 2168469 - | hypothetical protein TERM 3045 2169067 - 2169087 + g 72 -7.7 -3.60502 | opp_overlap 2169067 2169065, overlap 2169084 TTCATTACAAAAATA GGTAAATTC AGA GAATTTATC TTTGCAGATATGTCT CLK_1384 2170252 - 2169401 - | ABC transporter, permease protein CLK_1385 2170995 - 2170252 - | ABC transporter, ATP-binding protein TERM 3046 2170547 - 2170565 + gH 78 -6.6 -4.58308 | overlap 2170549 GGCTTTCCCAAAAGT GCCTGGGC AAT GCCTAGTC TTTGTTTCATTCCTA TERM 3047 2170549 - 2170563 + gH 76 -7.8 -3.88884 | overlap 2170547 CTTTCCCAAAAGTGC CTGGGC AAT GCCTAG TCTTTGTTTCATTCC CLK_1386 2170955 - 2171128 + | hypothetical protein CLK_1387 2173446 - 2171584 - | ABC transporter, ATP-binding/permease protein CLK_1388 2175743 - 2173443 - | putative ABC transporter, ATP-binding/permease protein TERM 3048 2175212 - 2175226 + g 72 -4.2 -5.16133 | overlap 2175214 TTTCTTTGGATATTT CACCTT TGG AAGGAG TTTTTATCTTATCAT TERM 3049 2175457 - 2175479 + g 73 -5.7 -4.55093 | opp_overlap 2175457 TAATCCTTTAAATAT CTTTCTAAA TCATC TTTGGAAAG TTTCTTCTTATCTAA TERM 3050 2176029 - 2176058 + H 82 -8.2 -4.4296 | opp_overlap 2176031 2176034, overlap 2176055 CTTTACCTATGTCAA TATAATAGTTAT ACTTTC ATAACTATTATA TTTTAATATATATTA CLK_1389 2176159 - 2176602 + | MarR family transcriptional regulator bltD 2176714 - 2177154 + | spermine/spermidine acetyltransferase TERM 3051 2177277 - 2177226 - T 93 -9.8 -4.07885 | opp_overlap 2177229 2177232, overlap 2177211 2177231 TATTGTTTTTTAAAA CTATATCCCCTTAATTTATTATTA TATA TAATAATAAATTAAGGGGTAATTA TCTATGGAATAATTT TERM 3052 2177229 - 2177274 + T 100 -13.7 -3.59698 | opp_overlap 2177211 2177226 2177231, overlap 2177232 TGTTTTTTAAAACTA TATCCCCTTAATTTATTATTA TATA TAATAATAAATTAAGGGGTAA TTATCTATGGAATAA TERM 3053 2177272 - 2177231 - T 100 -16.3 -3.09823 | opp_overlap 2177229 2177232, overlap 2177226 TTTTTTAAAACTATA TCCCCTTAATTTATTATTA TATA TAATAATAAATTAAGGGGT AATTATCTATGGAAT TERM 3054 2177232 - 2177271 + T 100 -19.8 -2.91997 | opp_overlap 2177231 2177226, overlap 2177229 TTTTTAAAACTATAT CCCCTTAATTTATTATTA TATA TAATAATAAATTAAGGGG TAATTATCTATGGAA moeB 2178069 - 2177386 - | molybdopterin biosynthesis protein MoeB TERM 3055 2178021 - 2178041 + g 71 -3.3 -5.26155 | overlap 2178023 AGTCTTTAAGTTTTT CGTTTTCTT CTA AAGAAAGAG TTTTTATATTTCTAT moaD 2178298 - 2178071 - | molybdopterin converting factor subunit 1 TERM 3056 2178623 - 2178584 - R 73 -8.8 -2.90615 | gap 1, opp_overlap 2178591, overlap 2178587 2178588 2178590 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGAG TERM 3057 2178618 - 2178588 - R 79 -9.8 -2.75769 | opp_overlap 2178591, overlap 2178587 2178584 2178590 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 3058 2178591 - 2178615 + r 90 -10.1 -3.71552 | opp_overlap 2178590 2178588 2178587 2178584 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 3059 2178659 - 2178628 - R 89 -10.2 -3.62522 | overlap 2178647 GAATTCTGTTAATAA GCTTCAGAGAGAGC AAAA ACTCCCTTTGAAGC CAAGAACTCTGTTTA aor 2180498 - 2178681 - | aldehyde ferredoxin oxidoreductase, tungsten-containing TERM 3060 2179632 - 2179644 + g 72 -2.7 -5.4505 | ACAAGCTATTGGACA TCTAT AAC ATGGA TTTTTTCTTACAAGA TERM 3061 2180740 - 2180713 - R 75 -8.6 -3.54436 | opp_overlap 2180713 TATATACCTAGATAA GAGCTTAACTTT ATCT AAAGTCAAACTC TCTTCTTCGTATATA aorR 2182800 - 2180905 - | aor transcriptional regulator TERM 3062 2181215 - 2181226 + g 70 -4.4 -4.96996 | opp_overlap 2181215 TCCATATATACAGAA GGTA TTTC TACC TTTCTTTTATTTAAA TERM 3063 2181772 - 2181801 + g 71 -2.3 -5.46698 | overlap 2181773 TCTGCTATCTGCAAT TTTTTTAGAATAA TCTA TTATGCTAAGAAG TTTTTTGCTTTTGCC CLK_1395 2183289 - 2182849 - | MOSC domain-containing protein moaC 2183770 - 2183291 - | molybdenum cofactor biosynthesis protein C moaA 2184733 - 2183774 - | molybdenum cofactor biosynthesis protein A CLK_1398 2186696 - 2184792 - | molybdopterin biosynthesis protein MoeA TERM 3064 2185633 - 2185643 + g 74 -5.4 -4.95806 | CCCCTATTTAAAGGT GTAG CTA CTAC TTTTTCTCCTACTTT TERM 3065 2186103 - 2186073 - G 89 -12 -2.867 | opp_overlap 2186081, overlap 2186081 AGCAATACCACCATA CTCAAAAACCTGTG CTG CAAAGGTTCTTGAG TTAAAATCTATTATA moeA 2187934 - 2186708 - | molybdopterin biosynthesis enzyme MoeA TERM 3066 2187431 - 2187445 + g 74 -8.6 -3.33884 | opp_overlap 2187431 2187430 AAGACTAGATAATAC CCCTAT TTC ATAGGG TCTTAATCTTTTACC TERM 3067 2187445 - 2187431 - G 70 -8.6 -2.61736 | opp_overlap 2187431, overlap 2187430 AAGACTAGATAATAC CCCTAT TTC ATAGGG TCTTAATCTTTTACC TERM 3068 2187867 - 2187877 + g 86 -2.6 -6.02914 | TCTTCTTTTATTGGT TTTA CAT TAAA TTTTTTTTCTATAAG mog 2188446 - 2187958 - | molybdopterin biosynthesis enzyme Mog tupC 2189346 - 2188654 - | tungstate ABC transporter, ATP-binding protein tupB 2190014 - 2189343 - | tungstate ABC transporter, permease protein TERM 3069 2189915 - 2189884 - G 70 -5.8 -4.20918 | opp_overlap 2189887, overlap 2189885 2189889 TTGAAGTTTAATAAA GCACAGGGAATGCC TAAA AGCATTCCCAATGT TGAAGCAATTAAAGT TERM 3070 2189914 - 2189885 - G 76 -9.3 -3.12069 | opp_overlap 2189887, overlap 2189884 2189889 TGAAGTTTAATAAAG CACAGGGAATGCC TAAA AGCATTCCCAATG TTGAAGCAATTAAAG TERM 3071 2189910 - 2189889 - G 85 -10.9 -3.10761 | opp_overlap 2189887, overlap 2189885 2189884 GTTTAATAAAGCACA GGGAATGCC TAAA AGCATTCCC AATGTTGAAGCAATT CLK_1403 2190874 - 2190023 - | tungstate ABC transporter, tungstate-binding protein TERM 3072 2190988 - 2190949 - R 100 -11.2 -5.75599 | opp_overlap 2190947 2190956, overlap 2190913 2190908 2190906 TAAATTATAAAAAAA TACAAAATATTATATACT CTAC ATTATATAATATTTTGTA CCATTATAACACATT CLK_1404 2192415 - 2191093 - | MATE efflux family protein TERM 3073 2192186 - 2192173 - G 74 -5.3 -5.00616 | TTTCCCGCCAAAAAA TTGTG AAAA CACAA TAGAAGTACCCATGC CLK_1405 2192611 - 2192408 - | hypothetical protein CLK_1406 2193496 - 2192852 - | hypothetical protein CLK_1407 2194490 - 2193819 - | ABC transporter, ATP-binding protein CLK_1408 2195965 - 2194505 - | ABC transporter, permease protein TERM 3074 2195241 - 2195261 + g 79 -7.7 -4.30911 | opp_overlap 2195243 ATATATATTTTATTA TATGGGTTT AAA AAATCCATA TTTCTATTATCATTA CLK_1410 2196302 - 2196460 + | hypothetical protein CLK_1409 2196538 - 2196413 - | non-heme chloroperoxidase TERM 3075 2196549 - 2196575 + r 82 -8.2 -4.46073 | opp_overlap 2196547 CCCATACAAATACCT CTCATAATAAAA TTC TTTCATTATGAG TTTATTCTATTGAAA TERM 3076 2196660 - 2196708 + r 100 -23.7 -5.4593 | opp_overlap 2196660 TTTATCATAAATAAA TCACCCCTTTATAGTTAATTTAT TTT GTAGATTAACTATAAAGGGGTGA TTTTTATTGTTTTAA TERM 3077 2196708 - 2196660 - R 100 -20.8 -4.59342 | opp_overlap 2196660 TTTATCATAAATAAA TCACCCCTTTATAGTTAATTTA TTTTG TAGATTAACTATAAAGGGGTGA TTTTTATTGTTTTAA TERM 3078 2196768 - 2196745 - R 95 -12.6 -3.49077 | opp_overlap 2196754 2196767, overlap 2196741 TTTATAAAAACTTAA GCTACTATTC ATAT GAATAGTAGC TACTCATAGGTTAGC CLK_1411 2198566 - 2196809 - | putative ABC transporter, ATP-binding/permease protein TERM 3079 2197634 - 2197612 - G 71 -4.9 -4.8143 | gap 1 TTAAGAATTCAAAAA CTCTGTGCAC GGCA GC-CACAGAG GACTGTATTGCTGAG CLK_1412 2200293 - 2198563 - | ABC transporter, ATP-binding/permease protein TERM 3080 2200252 - 2200264 + g 75 -4.9 -5.11613 | opp_overlap 2200252 AATGTTGAAAAATAG GTATA GCT TATAC TTTTTTAAATACTGT CLK_1413 2200408 - 2201229 + | ABC transporter CLK_1414 2201632 - 2202258 + | NADPH-dependent FMN reductase TERM 3081 2202261 - 2202295 + F 100 -13.8 -3.56568 | opp_overlap 2202263 2202267, overlap 2202264 2202267 CTTTATACGTTAATC TAGGAAGAGTCAACAA GAA TTGTTGACTCTTCTGA TTTAGAAACTCCTTC TERM 3082 2202293 - 2202263 - f 100 -14.2 -2.54523 | opp_overlap 2202261 2202264 2202267, overlap 2202267 TTATACGTTAATCTA GGAAGAGTCAACAA GAA TTGTTGACTCTTCT GATTTAGAAACTCCT TERM 3083 2202264 - 2202292 + F 100 -17.7 -2.91144 | opp_overlap 2202263 2202267, overlap 2202261 2202267 TATACGTTAATCTAG GAAGAGTCAACAA GAA TTGTTGACTCTTC TGATTTAGAAACTCC TERM 3084 2202289 - 2202267 - f 100 -13.6 -3.22091 | opp_overlap 2202264 2202261 2202267, overlap 2202263 ACGTTAATCTAGGAA GAGTCAACAA GAA TTGTTGACTC TTCTGATTTAGAAAC TERM 3085 2202267 - 2202289 + F 100 -13.6 -3.60151 | opp_overlap 2202267 2202263, overlap 2202264 2202261 ACGTTAATCTAGGAA GAGTCAACAA GAA TTGTTGACTC TTCTGATTTAGAAAC TERM 3086 2202458 - 2202426 - f 77 -7.8 -4.08706 | gap 1, opp_overlap 2202429 2202430, overlap 2202429 GGTCTATTATATAAA TATG-GGCTTACCCC CCTT GAGGTAAGCCTCTTA TATACTTTATTAAAG TERM 3087 2202429 - 2202455 + F 70 -7.3 -3.68504 | gap 1, opp_overlap 2202429 2202426, overlap 2202430 CTATTATATAAATAT G-GGCTTACCCC CCTT GAGGTAAGCCTC TTATATACTTTATTA TERM 3088 2202454 - 2202429 - f 76 -9.7 -2.77876 | opp_overlap 2202429 2202430, overlap 2202426 CTATTATATAAATAT GGGCTTACCCC CCTT GAGGTAAGCCT CTTATATACTTTATT TERM 3089 2202430 - 2202453 + F 93 -11 -3.40389 | opp_overlap 2202429 2202426, overlap 2202429 TATTATATAAATATG GGCTTACCCC CCTT GAGGTAAGCC TCTTATATACTTTAT TERM 3090 2203506 - 2203526 + F 75 -8.5 -3.54919 | opp_overlap 2203506 TTATAACTAATATAA CTTTATATA ATT TATATAAAG TTTCGAGAAATAATT TERM 3091 2203526 - 2203506 - f 76 -8.5 -3.78235 | opp_overlap 2203506 TTATAACTAATATAA CTTTATATA ATT TATATAAAG TTTCGAGAAATAATT CLK_1415 2203612 - 2204610 + | putative internalin CLK_1416 2204632 - 2206680 + | carbohydrate binding protein TERM 3092 2206790 - 2206821 + T 100 -11.8 -4.66625 | gap 1, opp_overlap 2206789 2206790 TTAAGACTTATAAAG GCAGTGCTAAGTATA TTA TA-ACTTGGCACTGC TTTCTTTCTATATGT TERM 3093 2206821 - 2206790 - T 78 -9.6 -2.9818 | gap 1, opp_overlap 2206790, overlap 2206789 TTAAGACTTATAAAG GCAGTGCTAAGT-AT ATT ATAACTTGGCACTGC TTTCTTTCTATATGT CLK_1417 2209581 - 2206945 - | cation-transporting ATPase PacL TERM 3094 2207483 - 2207467 - G 70 -8.1 -3.21126 | opp_overlap 2207464 AACTACATTTATTAA TAGCAAT TGA ATTGCTA AAATTGGTGAGCCCC TERM 3095 2208868 - 2208884 + g 71 -2.3 -5.4148 | overlap 2208863 2208862 GGCAAGTTTTTCCTG CAAAGGA GTA TTTTTTG TTTTTTCATTATTTA TERM 3096 2210235 - 2210245 + G 82 -4 -5.60993 | TTGTAGGTATAGATT TTCT TGC AGAA TTTTTTTCTGGCGCC CLK_1418 2209793 - 2210383 + | TetR family transcriptional regulator CLK_1419 2210655 - 2210792 + | hypothetical protein CLK_1420 2210963 - 2211958 + | putative internalin CLK_1421 2211979 - 2214198 + | hypothetical protein TERM 3097 2214277 - 2214244 - T 100 -14.2 -3.65002 | opp_overlap 2214244 ATTAAGCATATATAA GTAGGTAAATTTGT TCTTAC ACAAATTTACCTAC TTTTTTTATAGCATA TERM 3098 2214244 - 2214277 + T 100 -14.2 -5.626 | opp_overlap 2214244 ATTAAGCATATATAA GTAGGTAAATTTGT TCTTAC ACAAATTTACCTAC TTTTTTTATAGCATA CLK_1422 2215842 - 2214403 - | sensor histidine kinase TERM 3099 2215009 - 2215031 + g 80 -6.3 -4.90266 | CATTCCTTCTATTTG CCCCTTTAA AATAG TTATAGGGG TTTTTAATTCATGAG CLK_1423 2216497 - 2215832 - | DNA-binding response regulator TERM 3100 2216737 - 2216789 + r 78 -8 -4.27467 | opp_overlap 2216724 2216737 TATATTTAACATAAA TAAGGAAGAAGTTGTCTCAAAACA CATTT TATTTTAAAACAACCTCTTCCTTA TTTATGTTAGTATTA TERM 3101 2216789 - 2216737 - R 100 -16.8 -4.22678 | opp_overlap 2216737, overlap 2216724 TATATTTAACATAAA TAAGGAAGAAGTTGTCTCAAAACA CATTT TATTTTAAAACAACCTCTTCCTTA TTTATGTTAGTATTA CLK_1424 2217626 - 2216811 - | hypothetical protein CLK_1425 2218407 - 2217652 - | putative ABC transporter, permease protein CLK_1426 2219856 - 2218423 - | ABC transporter, ATP-binding protein CLK_1427 2220425 - 2219859 - | putative ABC transporter, permease protein CLK_1428 2221653 - 2220586 - | alanine racemase domain-containing protein TERM 3102 2220868 - 2220886 + g 73 -3.8 -5.19998 | overlap 2220869 ATCTAATCCTATATT TCCTTCTG GCA TAGAAGGC TTTTCTTTTAATTCT TERM 3103 2221952 - 2221938 - g 78 -10 -3.16961 | overlap 2221936 TTATAATATGCAAGA CCTCCA ATA TGGAGG CAGCTTTAATATACA CLK_1429 2221832 - 2223334 + | spore germination protein CLK_1430 2223324 - 2224412 + | spore germination protein TERM 3104 2225282 - 2225265 - g 70 -3.5 -5.04175 | overlap 2225254 TCAATTATACAAAAA TTTGAAT AATG ATCCAAA GGTATTAAAAAAATT CLK_1431 2224402 - 2225514 + | Ger(x)C family germination protein TERM 3105 2226186 - 2226168 - g 73 -9 -3.1478 | overlap 2226166 ATGATCTTATTAATA TATCCTTT TTT AAAGGATA GTAACAAAATTAAAA TERM 3106 2226554 - 2226544 - g 85 -2.6 -5.86332 | CTAATTCAAAAAAAA TTTT AGG AAAA ATAATGCCTATATAT CLK_1432 2225556 - 2226665 + | spore germination protein CLK_1433 2227121 - 2226693 - | hypothetical protein pcaC 2227416 - 2227748 + | 4-carboxymuconolactone decarboxylase CLK_1435 2227761 - 2228741 + | radical SAM domain-containing protein TERM 3107 2228785 - 2228748 - f 100 -16 -4.83269 | opp_overlap 2228748 ACAGCATAGTAAAAA CCAAAATACAGAATTT TATTGT AAATTCTGTATTTTGG TTTTTATATTTGCTT TERM 3108 2228748 - 2228785 + F 100 -16 -5.23644 | opp_overlap 2228748 ACAGCATAGTAAAAA CCAAAATACAGAATTT TATTGT AAATTCTGTATTTTGG TTTTTATATTTGCTT CLK_1436 2228922 - 2229677 + | TPR repeat-containing protein TERM 3109 2229909 - 2229885 - T 100 -8.7 -5.40004 | opp_overlap 2229873 2229885 2229890 CATTAAATGAAAAAA TCAAAGCTTAC TAT GCAAGCTTTAA TCTTTCATTTATCTT CLK_1437 2231325 - 2229895 - | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 3110 2230876 - 2230894 + g 73 -3.8 -5.22039 | overlap 2230878 ACCACTTTCCATTTC TAGCATAG GAG CTAAGCTG TTTTTTAGATTTAAA TERM 3111 2230945 - 2230933 - G 77 -5.5 -4.90471 | opp_overlap 2230933 ACGCAAAATAGAAAA TACGG AAG CCGCA TCTGTAGAAGAAATA TERM 3112 2231960 - 2231980 + r 74 -8.5 -3.43264 | CATCTACTTCATTAT TTTACAAAT GTT ATTTGTAAA TTCTACTGGATCATT hsp90 2233828 - 2231948 - | heat shock protein TERM 3113 2232439 - 2232455 + g 70 -8.1 -3.09096 | CATCTATATCATCCG TGAAGTA TAG TACTTCA TATCCTTTATCTAGT TERM 3114 2233879 - 2233858 - H 77 -8.9 -3.30658 | opp_overlap 2233862 2233874, overlap 2233856 2233862 TCAGATTAAAAACTA CAAATACAT TTTT ATGTATTTG CTCTAAATATAATAT CLK_1439 2234365 - 2235930 + | MutS domain-containing protein TERM 3115 2236057 - 2236112 + F 100 -10 -5.00616 | opp_overlap 2236065, overlap 2236060 2236063 2236065 2236104 2236105 2236107 ATAATTTATTTATAC TATTATAAGGACTTATTTGAGCTTAT TTCT AAAAGCTCGAATAAGTCCTATTATTA TTTTTTACAAGAAAA TERM 3116 2236060 - 2236109 + F 100 -11.7 -4.61482 | opp_overlap 2236065, overlap 2236057 2236063 2236065 2236104 2236105 2236107 ATTTATTTATACTAT TATAAGGACTTATTTGAGCTTAT TTCT AAAAGCTCGAATAAGTCCTATTA TTATTTTTTACAAGA TERM 3117 2236063 - 2236106 + F 100 -13.4 -4.40692 | opp_overlap 2236065, overlap 2236060 2236057 2236065 2236104 2236105 TATTTATACTATTAT AAGGACTTATTTGAGCTTAT TTCT AAAAGCTCGAATAAGTCCTA TTATTATTTTTTACA TERM 3118 2236104 - 2236065 - f 100 -13.8 -3.45849 | opp_overlap 2236065 2236063 2236060 2236057 TTTATACTATTATAA GGACTTATTTGAGCTTAT TTCT AAAAGCTCGAATAAGTCC TATTATTATTTTTTA TERM 3119 2236065 - 2236104 + F 100 -16 -3.78069 | opp_overlap 2236065, overlap 2236063 2236060 2236057 TTTATACTATTATAA GGACTTATTTGAGCTTAT TTCT AAAAGCTCGAATAAGTCC TATTATTATTTTTTA TERM 3120 2236107 - 2236133 + F 70 -7.6 -3.38208 | overlap 2236060 2236057 2236105 2236104 CTCGAATAAGTCCTA TTATTATTTTTT ACA AGAAAATAATAA TGCTTTTTCATTTTG TERM 3121 2237118 - 2237136 + G 73 -6 -4.67048 | opp_overlap 2237117 2237118 TCAAGCACAAGTAAT TCCATCAA TGC TTGCTGGA TTTCTTTTAGCCTGG treP 2236411 - 2237838 + | PTS system, trehalose-specific IIBC component TERM 3122 2238093 - 2238125 + F 72 -8.7 -2.67021 | gap 1, opp_overlap 2238093 2238100, overlap 2238092 2238099 2238100 ACAAATATATTAAAA TAGAAAA-GGAGGA TTAAGT TCCTCCCTTTTCTA ATTCATATTTAAACA TERM 3123 2238125 - 2238093 - f 86 -8.7 -4.47397 | gap 1, opp_overlap 2238092 2238093 2238099 2238100, overlap 2238100 ACAAATATATTAAAA TAGAAAA-GGAGGA TTAAGT TCCTCCCTTTTCTA ATTCATATTTAAACA TERM 3124 2238117 - 2238100 - f 83 -7 -4.91977 | opp_overlap 2238099 2238093 2238092 2238100, overlap 2238093 TATTAAAATAGAAAA GGAGGA TTAAGT TCCTCC CTTTTCTAATTCATA TERM 3125 2239060 - 2239044 - g 76 -6.7 -4.4009 | opp_overlap 2239044 TTTGATTTTATAAAA TTAAAGA ATC TCTTTAA TCATTGGCAGGTTGG TERM 3126 2239536 - 2239509 - g 78 -10.2 -2.88509 | opp_overlap 2239500 2239509 2239513, overlap 2239508 2239506 TTAAAAGATAAAGAT TCAATTTTTTAT CATT ATAAAAAATTGA TTAAGTTAAGAAAAG TERM 3127 2239509 - 2239536 + G 81 -10.2 -3.17075 | opp_overlap 2239508 2239506 2239509, overlap 2239500 2239513 TTAAAAGATAAAGAT TCAATTTTTTAT CATT ATAAAAAATTGA TTAAGTTAAGAAAAG treC 2238156 - 2239823 + | alpha,alpha-phosphotrehalase TERM 3128 2240274 - 2240262 - g 93 -4.9 -6.01369 | TAAATAATAAAAAAA TTATC TTA GATAA AGACTTTTTTAATAA TERM 3129 2240382 - 2240370 - g 72 -6.3 -4.2231 | AACTAGGACTTAAAA TTAGC TTT GCTAA AAAGGAAATTACAGT treR 2239856 - 2240566 + | trehalose operon repressor TERM 3130 2240633 - 2240674 + T 100 -14.8 -4.49673 | overlap 2240630 GATAGGTTTATATTT GCGCCTTTAAAATAAAAT TAAATC ATTTTACTTTAAAGGCGC TTCTTTCTTTTATAT CLK_1443 2241367 - 2240927 - | PTS system, fructose family, IIA component CLK_1444 2243037 - 2241640 - | PTS system, fructose family, IIBC component CLK_1445 2243961 - 2243038 - | PfkB family kinase CLK_1446 2244841 - 2243981 - | tagatose bisphosphate family class II aldolase TERM 3131 2245026 - 2245003 - R 100 -11.2 -5.63645 | opp_overlap 2245003 TGAAAATACAAAAAA GAGATTTTCA ATAT TGAAAATCTC TTTTCATATAGATTT TERM 3132 2245003 - 2245026 + r 100 -11.2 -4.37534 | opp_overlap 2245003 TGAAAATACAAAAAA GAGATTTTCA ATAT TGAAAATCTC TTTTCATATAGATTT CLK_1447 2245778 - 2245041 - | putative transcriptional regulator TERM 3133 2245469 - 2245480 + g 74 -3 -5.43487 | overlap 2245472 CAGTCTTCAATACAT TTTC TACA GAAA TTTTTTCTATAGTTT TERM 3134 2245472 - 2245492 + g 81 -5.5 -5.2204 | overlap 2245469 TCTTCAATACATTTT CTACAGAAA TTT TTTCTATAG TTTTTGTTACTTCTA CLK_1448 2246269 - 2245862 - | hypothetical protein CLK_1449 2246631 - 2247026 + | endoribonuclease L-PSP family protein TERM 3135 2247063 - 2247120 + T 100 -15.3 -4.10855 | gap 1, opp_overlap 2247055 2247069 2247071, overlap 2247069 AAAAATATTCCATTA TGA-AAAGGGGGGGTCTCAAAATTAAGA CTA TTTTTATTTTGAGACACCCTCTTTCTCA TTTTAAAAACCTTTT TERM 3136 2247069 - 2247113 + T 100 -14.5 -4.208 | opp_overlap 2247069 2247071, overlap 2247063 ATTCCATTATGAAAA GGGGGGGTCTCAAAATTAAGA CTA TTTTTATTTTGAGACACCCTC TTTCTCATTTTAAAA TERM 3137 2247113 - 2247069 - T 95 -10.1 -4.30844 | opp_overlap 2247063 2247069, overlap 2247071 ATTCCATTATGAAAA GGGGGGGTCTCAAAATTAAGA CTA TTTTTATTTTGAGACACCCTC TTTCTCATTTTAAAA TERM 3138 2247111 - 2247071 - T 82 -11.3 -2.50493 | opp_overlap 2247069 2247063, overlap 2247069 TCCATTATGAAAAGG GGGGGTCTCAAAATTAAGA CTA TTTTTATTTTGAGACACCC TCTTTCTCATTTTAA CLK_1450 2248212 - 2247343 - | radical SAM domain-containing protein TERM 3139 2248543 - 2248514 - R 95 -9.5 -4.90869 | gap 1, opp_overlap 2248515 2248517, overlap 2248515 ATTACTAATTAAAAA GGATGACTTCTGTA AAA TACAGAAATCA-CC TTTTTATAATAAATA TERM 3140 2248515 - 2248543 + r 90 -7.5 -4.9218 | opp_overlap 2248514 2248515, overlap 2248517 TTACTAATTAAAAAG GATGACTTCTGTA AAA TACAGAAATCACC TTTTTATAATAAATA TERM 3141 2248543 - 2248515 - R 95 -11.9 -3.53437 | opp_overlap 2248515 2248517, overlap 2248514 TTACTAATTAAAAAG GATGACTTCTGTA AAA TACAGAAATCACC TTTTTATAATAAATA TERM 3142 2248517 - 2248541 + r 72 -8.7 -2.72028 | opp_overlap 2248514 2248515, overlap 2248515 ACTAATTAAAAAGGA TGACTTCTGTA AAA TACAGAAATCA CCTTTTTATAATAAA CLK_1451 2249644 - 2248619 - | alpha/beta hydrolase domain-containing protein CLK_1452 2250296 - 2251387 + | glycerol dehydrogenase CLK_1453 2251748 - 2251635 - | hypothetical protein CLK_1454 2253527 - 2251878 - | methyl-accepting chemotaxis protein TERM 3143 2251931 - 2251976 + g 72 -7.7 -3.67597 | gap 1, opp_overlap 2251955, overlap 2251934 2251955 TATCTGCTAGTTCTG TAAGCTCCT-CAGCAGAAGAGG ATA CTTCTTCTGTAGAAGAAGCTTG TTGTTCCATGGCCGC TERM 3144 2251934 - 2251973 + g 74 -7.2 -3.97307 | gap 1, opp_overlap 2251955, overlap 2251931 2251955 CTGCTAGTTCTGTAA GCTCCT-CAGCAGAAGAGG ATA CTTCTTCTGTAGAAGAAGC TTGTTGTTCCATGGC TERM 3145 2252456 - 2252500 + g 70 -8.1 -3.1789 | opp_overlap 2252468, overlap 2252461 2252466 2252468 TAAGAACACTACCAC TTAATGAAGAAATTCTATCTG TAA CAGATAGAAAGTTTTCTTTAA TGTCTTCTACAGATT TERM 3146 2252461 - 2252495 + g 76 -8 -3.95449 | opp_overlap 2252468, overlap 2252456 2252466 2252468 ACACTACCACTTAAT GAAGAAATTCTATCTG TAA CAGATAGAAAGTTTTC TTTAATGTCTTCTAC TERM 3147 2252466 - 2252490 + g 70 -4.3 -4.98061 | opp_overlap 2252468, overlap 2252461 2252456 2252468 ACCACTTAATGAAGA AATTCTATCTG TAA CAGATAGAAAG TTTTCTTTAATGTCT TERM 3148 2252468 - 2252488 + g 85 -11.3 -2.73241 | opp_overlap 2252468, overlap 2252466 2252461 2252456 CACTTAATGAAGAAA TTCTATCTG TAA CAGATAGAA AGTTTTCTTTAATGT TERM 3149 2252488 - 2252468 - G 100 -11.3 -4.33621 | opp_overlap 2252468 2252466 2252461 2252456 CACTTAATGAAGAAA TTCTATCTG TAA CAGATAGAA AGTTTTCTTTAATGT CLK_1455 2253634 - 2253521 - | hypothetical protein CLK_1456 2254760 - 2253699 - | alanine racemase domain-containing protein TERM 3150 2255109 - 2255077 - R 100 -12.3 -5.16237 | opp_overlap 2255077 AATTCTATTAAAAAA GTTGCCTTAAAAT AGATTTA ATTTTAAGGCAAC TTTTTATTATTTTTT TERM 3151 2255077 - 2255109 + r 100 -12.3 -5.54403 | opp_overlap 2255077 AATTCTATTAAAAAA GTTGCCTTAAAAT AGATTTA ATTTTAAGGCAAC TTTTTATTATTTTTT CLK_1457 2255394 - 2255116 - | hypothetical protein CLK_1458 2255865 - 2256929 + | oxidoreductase family protein TERM 3152 2257137 - 2257082 - T 95 -11 -3.53224 | opp_overlap 2257086, overlap 2257084 2257086 TATCCCCTCTTTAAA TACATCTATGTGAATATATATTTT TAAACCAT AAAATATATATTCACATAGATTTT TATATTGTTTTTTTT TERM 3153 2257135 - 2257084 - T 100 -13.6 -3.34398 | opp_overlap 2257086, overlap 2257082 2257086 TCCCCTCTTTAAATA CATCTATGTGAATATATATTTT TAAACCAT AAAATATATATTCACATAGATT TTTATATTGTTTTTT TERM 3154 2257086 - 2257133 + T 100 -16.2 -5.25799 | opp_overlap 2257084 2257082 2257086 CCCTCTTTAAATACA TCTATGTGAATATATATTTT TAAACCAT AAAATATATATTCACATAGA TTTTTATATTGTTTT TERM 3155 2257133 - 2257086 - T 100 -16.2 -3.24232 | opp_overlap 2257086, overlap 2257084 2257082 CCCTCTTTAAATACA TCTATGTGAATATATATTTT TAAACCAT AAAATATATATTCACATAGA TTTTTATATTGTTTT CLK_1459 2257720 - 2257175 - | phosphoribosyl transferase domain-containing protein CLK_1460 2258800 - 2257736 - | xanthine/uracil permease family protein TERM 3156 2259153 - 2259132 - R 100 -7.5 -5.7946 | opp_overlap 2259124 2259132 TGCTCAACAAAAAAA TTTTGTATA ATCT TATACAAAA TTTTTAGGTTTTATC TERM 3157 2259132 - 2259153 + r 86 -7.5 -4.89729 | opp_overlap 2259132, overlap 2259124 TGCTCAACAAAAAAA TTTTGTATA ATCT TATACAAAA TTTTTAGGTTTTATC CLK_1461 2259712 - 2259164 - | GGDEF domain-containing protein CLK_1462 2261248 - 2259944 - | hypothetical protein TERM 3158 2260356 - 2260367 + g 71 -5.8 -4.41047 | opp_overlap 2260355, overlap 2260366 TGGCCAAAAAATACT GCTC TTTG GAGC TTTTCCTTAGAAGCT TERM 3159 2261481 - 2261504 + r 89 -9.8 -3.52113 | opp_overlap 2261480 2261481 2261483, overlap 2261493 ACATTCATATTAAAG TATTTTTGCA TCTT TGCAAAAATA TTCTCACTTTTGCAA TERM 3160 2261504 - 2261481 - R 80 -9.8 -2.90841 | opp_overlap 2261481 2261493, overlap 2261480 2261483 ACATTCATATTAAAG TATTTTTGCA TCTT TGCAAAAATA TTCTCACTTTTGCAA CLK_1463 2263283 - 2261508 - | putative sigma-54 dependent transcriptional regulator TERM 3161 2263426 - 2263438 + H 72 -4.9 -4.91852 | opp_overlap 2263426 AATTTTTCAAATGAA GATAA AAC TTATC TTTGTTTTTAATAAA TERM 3162 2263566 - 2263622 + H 73 -6.8 -4.32951 | gap 1, opp_overlap 2263566 2263567, overlap 2263567 TTCACCATAATATAA G-GGGAAGGTTCATGAAAATTTGCTAT TTTT ACAATAAAATTTCATGAACCATCCCTC TTTCTTAATTAGAAT TERM 3163 2263621 - 2263566 - H 84 -9.2 -3.77808 | opp_overlap 2263566 2263567, overlap 2263567 TTCACCATAATATAA GGGGAAGGTTCATGAAAATTTGCTAT TTTT ACAATAAAATTTCATGAACCATCCCT CTTTCTTAATTAGAA TERM 3164 2263620 - 2263567 - H 91 -12.7 -2.86203 | opp_overlap 2263567 2263566, overlap 2263566 TCACCATAATATAAG GGGAAGGTTCATGAAAATTTGCTAT TTTT ACAATAAAATTTCATGAACCATCCC TCTTTCTTAATTAGA TERM 3165 2263567 - 2263620 + H 91 -10.5 -3.7642 | opp_overlap 2263566 2263567, overlap 2263566 TCACCATAATATAAG GGGAAGGTTCATGAAAATTTGCTAT TTTT ACAATAAAATTTCATGAACCATCCC TCTTTCTTAATTAGA CLK_1464 2263759 - 2264889 + | DEAD-box ATP dependent DNA helicase TERM 3166 2264901 - 2264868 - f 95 -10.5 -4.22591 | opp_overlap 2264864 2264868, overlap 2264855 AAGAACTTTAACAAA TTCTAAAGAGGATAA CAAA TAATCCTCTCTAGAA TTGATTATATATCCA TERM 3167 2264868 - 2264901 + F 75 -8.3 -3.52316 | opp_overlap 2264855 2264868, overlap 2264864 AAGAACTTTAACAAA TTCTAAAGAGGATAA CAAA TAATCCTCTCTAGAA TTGATTATATATCCA TERM 3168 2264982 - 2265007 + F 75 -8.4 -3.63878 | overlap 2264987 ATTTAAAAATTCATC CAAAAGCATC ATATCA GGTGCTTTTG TTATAGTTATTCTCT CLK_1465 2265209 - 2266006 + | SCP-like extracellular protein TERM 3169 2266012 - 2266067 + T 91 -8.6 -4.97666 | opp_overlap 2266010 2266021 2266025 2266028, overlap 2266021 2266025 AGGTAAATAAACATA TATAACATATAAATAATAGGAACTGC TTTA GCAGTTCCTATTGTTTATTTAAGATA TTTTTATAATCTCTT TERM 3170 2266021 - 2266058 + T 100 -18.1 -3.73294 | opp_overlap 2266010 2266021 2266025 2266028, overlap 2266012 2266025 AACATATATAACATA TAAATAATAGGAACTGC TTTA GCAGTTCCTATTGTTTA TTTAAGATATTTTTA TERM 3171 2266058 - 2266021 - T 100 -15.9 -3.26989 | opp_overlap 2266021 2266012 2266025, overlap 2266010 2266025 2266028 AACATATATAACATA TAAATAATAGGAACTGC TTTA GCAGTTCCTATTGTTTA TTTAAGATATTTTTA TERM 3172 2266025 - 2266054 + T 100 -14.5 -4.4572 | opp_overlap 2266021 2266025 2266028, overlap 2266021 2266012 TATATAACATATAAA TAATAGGAACTGC TTTA GCAGTTCCTATTG TTTATTTAAGATATT TERM 3173 2266054 - 2266025 - T 100 -12.3 -4.26393 | opp_overlap 2266025 2266021 2266012, overlap 2266021 2266028 TATATAACATATAAA TAATAGGAACTGC TTTA GCAGTTCCTATTG TTTATTTAAGATATT TERM 3174 2266051 - 2266028 - T 100 -14 -4.22858 | opp_overlap 2266025 2266021 2266012, overlap 2266025 2266021 ATAACATATAAATAA TAGGAACTGC TTTA GCAGTTCCTA TTGTTTATTTAAGAT CLK_1466 2267406 - 2266060 - | GntR family transcriptional regulator CLK_1467 2267555 - 2268463 + | hypothetical protein TERM 3175 2268577 - 2268593 + T 70 -3.8 -5.22312 | opp_overlap 2268577, overlap 2268558 GCGCACCTTAAAAAA TTAGAT TTTCC ATCTAA TTTTTTGGTGTCACT aspB 2269834 - 2268683 - | aspartate aminotransferase CLK_1469 2270576 - 2269854 - | polar amino acid ABC transporter ATP-binding protein CLK_1470 2271249 - 2270563 - | His/Glu/Gln/Arg/opine ABC transporter permease CLK_1471 2272214 - 2271396 - | polar amino acid ABC transporter amino acid-binding protein CLK_1472 2273580 - 2272306 - | hypothetical protein TERM 3176 2273781 - 2273753 - R 88 -8.2 -4.87318 | opp_overlap 2273742 TTTAAAATTTAAAAA CCACACTCCAGT TGAAT ACTGAAATGCGG TTTTTAAATAAATAT CLK_1473 2275083 - 2273944 - | aminotransferase, class V CLK_1474 2275963 - 2275298 - | chloramphenicol O-acetyltransferase CLK_1475 2276523 - 2276269 - | hypothetical protein CLK_1476 2277070 - 2276858 - | hypothetical protein TERM 3177 2277174 - 2277164 - R 73 -2.6 -5.72622 | opp_overlap 2277164, overlap 2277157 TTTATAAATAAAAAA TTTA AGC TAAA TATAATAAAAAAATA TERM 3178 2277330 - 2277289 - R 76 -8.2 -3.7319 | opp_overlap 2277288 2277289 2277294, overlap 2277294 AGTTACAAGACATAA TAAAATCGGAGTAATGGC TTTAAC ACTATAACTCCGATTTTA CTTATGATCCAAACA TERM 3179 2277289 - 2277330 + r 75 -9.7 -2.64099 | opp_overlap 2277289 2277294, overlap 2277288 2277294 AGTTACAAGACATAA TAAAATCGGAGTAATGG CTTTAACA CTATAACTCCGATTTTA CTTATGATCCAAACA CLK_1477 2277588 - 2277367 - | hypothetical protein TERM 3180 2277663 - 2277676 + r 70 -3.1 -5.43621 | opp_overlap 2277658, overlap 2277658 AATATATAATCCTAT TGCTT TCAT AGGCA TTTTTTGTCATTTAT CLK_1478 2278417 - 2277800 - | hypothetical protein TERM 3181 2277925 - 2277898 - G 73 -3.5 -5.22289 | opp_overlap 2277921, overlap 2277892 CACCAAACATAAAAA TTTTAGGCAAT CCTGTC AATGCCCAAAA TATTAATAGTATTAA CLK_1479 2279191 - 2278610 - | regulatory protein BetI TERM 3182 2279218 - 2279185 - G 77 -9.9 -3.01712 | opp_overlap 2279185 TTTCTTTTTTCAATA TTTGCATAAAAGA CCATCCAT TCTTTTATGCAAA TGATATAGCATCTTA TERM 3183 2279185 - 2279218 + g 76 -9.9 -2.6472 | opp_overlap 2279185 TTTCTTTTTTCAATA TTTGCATAAAAGA CCATCCAT TCTTTTATGCAAA TGATATAGCATCTTA TERM 3184 2279871 - 2279905 + r 83 -9.5 -3.55203 | gap 1, opp_overlap 2279870 2279869 TATGCATATTAAATT TGGCATGAG-TCCA GTTTAATA TGGAACTCATGCCA TTTAAGCAAAATTTT CLK_1480 2282521 - 2280026 - | magnesium transport P-type atpase CLK_1481 2282777 - 2283430 + | transcriptional regulator TERM 3185 2283672 - 2283689 + T 100 -11.3 -4.38313 | opp_overlap 2283672 TTCATGCTTTAAAAA GGCAGTC AAAT GACTGCC TTTTAGATTTCATAT TERM 3186 2283689 - 2283672 - T 100 -11.3 -4.58395 | opp_overlap 2283672 TTCATGCTTTAAAAA GGCAGTC AAAT GACTGCC TTTTAGATTTCATAT CLK_1482 2285134 - 2283779 - | proton-dependent oligopeptide transporter TERM 3187 2284741 - 2284723 - G 71 -9 -2.80975 | overlap 2284722 ATGCATTATCTAAAT CTTTTTGA TTA TCAAAAAG TCTACCTGTAATAGC TERM 3188 2285398 - 2285422 + r 70 -7.2 -3.68908 | opp_overlap 2285398, overlap 2285401 AAAGTTATAAAAAAA GAAGCCATTG AAAAA CAATGACTTC TTTAAATAAATATTT TERM 3189 2285422 - 2285398 - R 100 -9.4 -5.68039 | opp_overlap 2285398 2285401 AAAGTTATAAAAAAA GAAGCCATTG AAAAA CAATGACTTC TTTAAATAAATATTT CLK_1483 2286823 - 2285474 - | amino acid/peptide transporter TERM 3190 2286629 - 2286611 - G 70 -5.2 -4.55697 | ACGGTCAGAAATAAA TGCTCCAA TTA CTGGTGCA AGATAAGTGAATGCA TERM 3191 2287219 - 2287205 - H 90 -4.4 -6.28401 | TAAAAAATAAAAAAA TTTAAA AAT TTTAAA AAAGGAAAGAACCAA pepQ 2287333 - 2288421 + | proline dipeptidase pepIP 2288503 - 2289384 + | proline iminopeptidase TERM 3192 2289466 - 2289439 - T 100 -12.1 -4.14725 | opp_overlap 2289439 CACGTAAATTACAAA GGGGCTGTCAT GCAACT ATGACAACCCC TTTTATTAAGTCTTT TERM 3193 2289439 - 2289466 + T 100 -10.6 -4.7268 | opp_overlap 2289439 CACGTAAATTACAAA GGGGCTGTCATG CAAC TATGACAACCCC TTTTATTAAGTCTTT CLK_1486 2289657 - 2289532 - | hypothetical protein CLK_1487 2291167 - 2289674 - | sodium:neurotransmitter symporter family protein TERM 3194 2291252 - 2291229 - R 87 -6 -5.72622 | opp_overlap 2291240 2291242 2291244 TTTATAAATAAAAAA GCCCCACAGT TTAT ACTATGAGAC TTTTTTACCTAGGAT TERM 3195 2291277 - 2291299 + r 100 -12.1 -4.7923 | opp_overlap 2291277, overlap 2291244 2291242 2291240 TAGGATATTACAAAA GTCCCATAG TATAT CTATGGGAC TTTATTTATTTCAAT TERM 3196 2291299 - 2291277 - R 100 -12.1 -4.52047 | opp_overlap 2291244 2291242 2291240 2291277 TAGGATATTACAAAA GTCCCATAG TATAT CTATGGGAC TTTATTTATTTCAAT CLK_1488 2292498 - 2291566 - | hypothetical protein TERM 3197 2291639 - 2291658 + g 81 -3.6 -5.62045 | opp_overlap 2291639 TCATCTCCATATAAG TCACCA AATAATAG TGGTGA TTTTTTATTATGTCT CLK_1489 2293989 - 2292595 - | GntR family transcriptional regulator TERM 3198 2293550 - 2293563 + g 71 -6.7 -3.9712 | opp_overlap 2293550 ATTCTGTGATAAGGA CATCC TAAA GGATG TTTGTAATCCAATAG CLK_1490 2294107 - 2294886 + | PhzF family phenazine biosynthesis protein CLK_1491 2294972 - 2295262 + | endoribonuclease L-PSP CLK_1492 2295406 - 2295284 - | hypothetical protein TERM 3199 2295408 - 2295430 + r 100 -14.2 -3.22774 | opp_overlap 2295406 TTCTGTAAAGTCATG GCCATCCGTT AAA AACGGGTGGC TTACTCATCCCTATA TERM 3200 2295565 - 2295526 - R 73 -2.3 -5.75478 | overlap 2295528 2295530 AATCACACAAAAAAA GATATAGGTAAATTTGT TTTTAC ACAACTCTACCTACATA CTCCAAAAACAATGT CLK_1493 2296238 - 2295591 - | hypothetical protein TERM 3201 2295953 - 2295969 + g 80 -2.3 -5.79588 | overlap 2295944 AGGCTTTAAAATTTT TATCTAC TAA GTATATA TTTTTTTCATTTTCA CLK_1494 2298938 - 2296461 - | thrombospondin type 3 repeat-containing protein TERM 3202 2299202 - 2299180 - R 80 -8.5 -4.32903 | AGCAAAGACTTAAAA GACAGGTAA TAAAT TTACCTGCC TAAAATATCAATATA CLK_1495 2299853 - 2299353 - | nitroreductase family protein CLK_1496 2301900 - 2299957 - | hypothetical protein TERM 3203 2300211 - 2300225 + g 74 -5 -4.88646 | overlap 2300205 2300204 CGCCATCTGTAATCT CGAAGA TTA TCTTTG TTTGTTTTCCTTTTT TERM 3204 2300341 - 2300354 + g 87 -3.8 -5.95286 | TAACTTTATGATTGA GCGA ATTATA TCGC TTTTTTCTTTTTCCT TERM 3205 2301235 - 2301247 + g 70 -6.3 -4.08394 | opp_overlap 2301220 CTGATTGAAAATTTT TCCAT CAA ATGGA TTTTGAGCACACTCT TERM 3206 2301318 - 2301304 - G 76 -2.8 -5.64873 | opp_overlap 2301304 TTCAATAATAAAAAA GCTATT TGC AAAAGC TCTATGCCTAGGCAT CLK_1497 2303150 - 2301915 - | hypothetical protein CLK_1498 2305258 - 2303147 - | hypothetical protein TERM 3207 2304024 - 2304010 - G 71 -5.7 -4.41494 | opp_overlap 2304010 CAGGCTTAATCAAAA CAGGA CCAAC TCCTG TGATATAAGCTGTAT TERM 3208 2305359 - 2305317 - R 93 -11.7 -3.13382 | gap 1, opp_overlap 2305317 2305327, overlap 2305327 TATCAAATGGCAATA TGAATAAAAATCCCGATTTT TTTA AAATTCGGGATTTTTAT-CA TTATCTAACTTTAAA TERM 3209 2305317 - 2305359 + r 95 -11.7 -3.57797 | gap 1, opp_overlap 2305317 2305327, overlap 2305327 TATCAAATGGCAATA TGAATAAAAATCCCGATTTT TTTA AAATTCGGGATTTTTAT-CA TTATCTAACTTTAAA TERM 3210 2305350 - 2305327 - R 95 -8.2 -5.19251 | opp_overlap 2305317 2305327, overlap 2305317 CAATATGAATAAAAA TCCCGATTTT TTTA AAATTCGGGA TTTTTATCATTATCT TERM 3211 2305327 - 2305350 + r 91 -8.2 -5.02439 | opp_overlap 2305327 2305317, overlap 2305317 CAATATGAATAAAAA TCCCGATTTT TTTA AAATTCGGGA TTTTTATCATTATCT CLK_1499 2307173 - 2305380 - | myosin-cross-reactive antigen family protein TERM 3212 2306032 - 2306051 + g 83 -7.8 -4.56629 | CCTCCTGTTACAGTG CGTCCACC GTAT GGTGAACG TTTTGTGATCTTCTC TERM 3213 2307336 - 2307346 + r 83 -4 -5.82281 | opp_overlap 2307336 AAGATCTCTATAAAT CTAT AAT ATAG TTTTTTTGTGTCTTT TERM 3214 2307366 - 2307420 + r 100 -29.2 -4.61231 | opp_overlap 2307371 2307375 2307379, overlap 2307379 TTTGTGTCTTTTTCA TTAGATAAATAAACTGCAGTGTTCGA ATT TCGAACACCGCAGTTTATTTATCTAA TTTTTAGGCATCTAG TERM 3215 2307415 - 2307371 - R 100 -25.5 -2.78384 | opp_overlap 2307366 2307379, overlap 2307375 2307379 GTCTTTTTCATTAGA TAAATAAACTGCAGTGTTCGA ATT TCGAACACCGCAGTTTATTTA TCTAATTTTTAGGCA TERM 3216 2307411 - 2307375 - R 100 -21.9 -4.08706 | opp_overlap 2307366 2307379, overlap 2307371 2307379 TTTTCATTAGATAAA TAAACTGCAGTGTTCGA ATT TCGAACACCGCAGTTTA TTTATCTAATTTTTA TERM 3217 2307407 - 2307379 - R 100 -18.3 -4.64048 | opp_overlap 2307379 2307366, overlap 2307375 2307371 CATTAGATAAATAAA CTGCAGTGTTCGA ATT TCGAACACCGCAG TTTATTTATCTAATT TERM 3218 2307379 - 2307407 + r 100 -16.1 -4.64952 | opp_overlap 2307375 2307371 2307379, overlap 2307366 CATTAGATAAATAAA CTGCAGTGTTCGA ATT TCGAACACCGCAG TTTATTTATCTAATT CLK_1500 2308047 - 2307478 - | TetR family transcriptional regulator TERM 3219 2307534 - 2307517 - G 73 -8.5 -3.41878 | GCGCTTAAGGGACAA TTCGATG TTTC CATCGAA GAGATACCCGATTCG TERM 3220 2307834 - 2307818 - G 82 -7.3 -4.77165 | opp_overlap 2307818 GCGGCTACAATAAAA CTCTCCT CCC AGGAAAG TGTATCATTATATTC CLK_1502 2308945 - 2308781 - | hypothetical protein CLK_1503 2309495 - 2309265 - | bifunctional phosphonoacetaldehyde hydrolase/aminoethylphosphonatetransaminase CLK_1504 2310485 - 2309754 - | 2-aminoethylphosphonate--pyruvate transaminase CLK_1505 2311107 - 2310496 - | hypothetical protein TERM 3221 2311081 - 2311062 - Gg 73 -8.6 -3.09995 | opp_overlap 2311061 2311062, overlap 2311061 TTGAAAAAACAGAAG TGGTCCCT AGGG AGGAACCA ATTTTCAAGTCTAAA CLK_1506 2311061 - 2312086 + | glycosyl transferase TERM 3222 2312174 - 2312199 + Tr 90 -6.1 -5.85737 | GTATTCAGATACTTA CTGCCCTAAGT TGAA GCTAAGGGTAG TTTTTTTGTTCATAT TERM 3223 2312354 - 2312398 + Tr 75 -3.8 -5.5762 | gap 2, opp_overlap 2312354, overlap 2312364 GCTTACTATAAAAAA CGGCTTCTTCCCAACATATC CTTTGTT GGT-TGTTTG-AAGAAGCCG TTTTTTATATTTAAT CLK_1507 2313609 - 2312548 - | hypothetical protein TERM 3224 2312694 - 2312710 + g 79 -9.5 -3.40775 | overlap 2312686 2312685 2312693 TTCCTTCTTCAAGCT CCTTGAA TGT TTCAAGG TATTTCCATGCGAAT CLK_1508 2314297 - 2313653 - | hexapeptide repeat-containing transferase CLK_1509 2315528 - 2314389 - | aminotransferase CLK_1510 2316473 - 2315574 - | hypothetical protein TERM 3225 2317527 - 2317505 - g 82 -10.8 -2.68434 | opp_overlap 2317510, overlap 2317507 2317510 TGCCATAGCAGATGA TACAACTATT ACA AATAGTTGTA TAGGGCCTTATACCT TERM 3226 2317525 - 2317507 - g 71 -9 -2.8844 | opp_overlap 2317510, overlap 2317505 2317510 CCATAGCAGATGATA CAACTATT ACA AATAGTTG TATAGGGCCTTATAC CLK_1511 2316675 - 2317736 + | glucose-1-phosphate thymidylyltransferase TERM 3227 2318679 - 2318663 - g 70 -3.6 -5.14626 | overlap 2318665 2318673 AGCAGTAAAATAAAA GACCAG TTAAG CTGGGC TTGCAGCTATAAGCT rfbB 2317778 - 2318758 + | dTDP-glucose 4,6-dehydratase CLK_1513 2319034 - 2319327 + | hypothetical protein TERM 3228 2319397 - 2319443 + F 95 -10.4 -4.15833 | gap 3, opp_overlap 2319397 2319398 2319403, overlap 2319398 2319435 AACCGATACGGAAAA G-CAAG-AGAGAGGCGTTG-CCC TTAA GGGATAGCGCCTCTCTACTTGTC TTTTGAAGTAGTCCT TERM 3229 2319442 - 2319397 - f 78 -7.6 -4.24606 | gap 1, opp_overlap 2319397 2319398 2319435, overlap 2319398 2319403 AACCGATACGGAAAA GCAAG-AGAGAGGCGTTGCCC TTAAG GGATAGCGCCTCTCTACTTGT CTTTTGAAGTAGTCC TERM 3230 2319398 - 2319441 + F 100 -14.1 -3.67634 | gap 2, opp_overlap 2319397 2319398 2319403, overlap 2319397 2319435 ACCGATACGGAAAAG CAAG-AGAGAGGCGTTG-CCC TTAA GGGATAGCGCCTCTCTACTTG TCTTTTGAAGTAGTC TERM 3231 2319441 - 2319398 - f 90 -11.1 -3.1404 | gap 1, opp_overlap 2319398 2319397 2319435, overlap 2319397 2319403 ACCGATACGGAAAAG CAAG-AGAGAGGCGTTGCCC TTAAG GGATAGCGCCTCTCTACTTG TCTTTTGAAGTAGTC TERM 3232 2319435 - 2319403 - f 87 -9.8 -3.4243 | opp_overlap 2319398 2319397, overlap 2319398 2319397 TACGGAAAAGCAAGA GAGAGGCGTTGCCC TTAAG GGATAGCGCCTCTC TACTTGTCTTTTGAA CLK_1514 2319581 - 2319874 + | hypothetical protein TERM 3233 2319986 - 2319941 - T 78 -7.6 -4.24606 | gap 1, opp_overlap 2319941 2319942 2319985, overlap 2319942 2319947 AACCGATACGGAAAA GCAAG-AGAGAGGCGTTGCCC TCAAG GGATAGCGCCTCTCTACTTGT CTTTTGAAGGCTTAT TERM 3234 2319941 - 2319987 + T 95 -10.4 -4.12599 | gap 3, opp_overlap 2319941 2319942 2319947, overlap 2319942 2319985 AACCGATACGGAAAA G-CAAG-AGAGAGGCGTTG-CCC TCAA GGGATAGCGCCTCTCTACTTGTC TTTTGAAGGCTTATT TERM 3235 2319985 - 2319942 - T 90 -11.1 -3.1404 | gap 1, opp_overlap 2319941 2319942, overlap 2319941 2319947 ACCGATACGGAAAAG CAAG-AGAGAGGCGTTGCCC TCAAG GGATAGCGCCTCTCTACTTG TCTTTTGAAGGCTTA TERM 3236 2319942 - 2319985 + T 100 -14.1 -3.6543 | gap 2, opp_overlap 2319942 2319941 2319947, overlap 2319941 ACCGATACGGAAAAG CAAG-AGAGAGGCGTTG-CCC TCAA GGGATAGCGCCTCTCTACTTG TCTTTTGAAGGCTTA TERM 3237 2319979 - 2319947 - T 87 -9.8 -3.4243 | opp_overlap 2319942 2319941, overlap 2319942 2319941 TACGGAAAAGCAAGA GAGAGGCGTTGCCC TCAAG GGATAGCGCCTCTC TACTTGTCTTTTGAA TERM 3238 2320701 - 2320745 + T 76 -6.1 -4.88293 | gap 2, opp_overlap 2320723 2320726, overlap 2320707 2320708 2320710 GAATTAAAATCAAGT CAGATGGGACTCCGAAAAT ACACTACCG ATTTTCGGAGTC--ATCTG TTTATTTTTCAGATT TERM 3239 2320708 - 2320740 + T 81 -10.8 -2.74298 | opp_overlap 2320723 2320726, overlap 2320707 2320701 2320710 AATCAAGTCAGATGG GACTCCGAAAAT ACACTACCG ATTTTCGGAGTC ATCTGTTTATTTTTC CLK_1515 2322249 - 2320960 - | lipase TERM 3240 2322270 - 2322305 + r 83 -6.4 -5.18643 | gap 1, opp_overlap 2322270 TGCTCCTTTACATCA TAAATTCTGTAGCC-AG CAG CTAGGCTATATAATTTA TTTTATTTTGATTAA TERM 3241 2323086 - 2323063 - R 100 -8.2 -5.61881 | TTCGAAAAAGAAAAA GCGGAGAA CATCTAGT TTCTCCGC TGGGAACAATAGCTT TERM 3242 2323244 - 2323230 - R 77 -6.4 -4.70266 | AACATCAGTGAAAAA TCAGCA CTT CGCTGA AAATTTACTTTCCCT CLK_1516 2323434 - 2323309 - | hypothetical protein CLK_1517 2324079 - 2323438 - | ABC transporter, permease protein CLK_1518 2324939 - 2324073 - | ABC transporter, ATP-binding protein CLK_1519 2325316 - 2324939 - | GntR family transcriptional regulator TERM 3243 2325721 - 2325698 - R 82 -5.3 -5.45802 | TTTTCAAAATAAAAA GCAGAGAAC ATCTAG ATTCTCCGC CGGGAACAATATCTT CLK_1520 2327007 - 2325823 - | glycosyl transferase family protein CLK_1521 2327353 - 2327000 - | AbrB family transcriptional regulator CLK_1522 2328435 - 2327773 - | transposase TERM 3244 2328557 - 2328521 - R 82 -8.2 -4.51174 | opp_overlap 2328520 2328532, overlap 2328522 TTATCATAATTAAAA GTTTAAGGGAATAAGT ATTGA ACTTATTCCCTTGAAA ATGCTTACATCCACA TERM 3245 2328556 - 2328522 - R 95 -11.7 -3.29981 | opp_overlap 2328520 2328532, overlap 2328521 TATCATAATTAAAAG TTTAAGGGAATAAGT ATTGA ACTTATTCCCTTGAA AATGCTTACATCCAC CLK_1523 2328744 - 2328622 - | hypothetical protein TERM 3246 2328781 - 2328820 + r 82 -8.9 -4.16016 | opp_overlap 2328818, overlap 2328818 AAATCTGAATTTTTG TTCCTTGATTTATAAAA CAAAAT TATTATAAATCAAGGGA TTTCTTAAAACCTAA TERM 3247 2328942 - 2328917 - R 88 -8.5 -4.7629 | gap 1, opp_overlap 2328917 GCATCAATGTAAAAA TAGCGGAAA-AT TCA ATATTTCCGCTA TTTTTCTCTTCAATA TERM 3248 2328917 - 2328942 + r 95 -8.5 -5.10767 | gap 1, opp_overlap 2328917 GCATCAATGTAAAAA TAGCGGAAA-AT TCA ATATTTCCGCTA TTTTTCTCTTCAATA CLK_1524 2330226 - 2328976 - | radical SAM domain-containing protein CLK_1525 2330665 - 2330438 - | hypothetical protein TERM 3249 2330980 - 2330953 - R 100 -8.6 -5.48213 | opp_overlap 2330953 2330970, overlap 2330970 TATTCAAAATAAAAA CTAGCCTAATAT TAAT ATACTAAGCTAG TATTACTTTAAAATA CLK_1526 2332617 - 2331160 - | ABC transporter, ATP-binding protein TERM 3250 2332161 - 2332176 + g 70 -4 -4.93296 | TAGCATAAATAGAGG CAAAGG CTAT CTTTTG TTTTTCTCCTCCTGA CLK_1527 2333356 - 2332631 - | putative ABC transporter, permease protein CLK_1528 2333964 - 2333353 - | hypothetical protein TERM 3251 2334246 - 2334217 - H 83 -9.3 -3.59583 | opp_overlap 2334210 2334207, overlap 2334235 ATAACGATTTCTAAA CTTTAGTGGGAGT AAAA ACTCCCTCTGAAG CCAAGAACTCTGTTT TERM 3252 2334739 - 2334715 - g 86 -7.3 -5.01497 | opp_overlap 2334728, overlap 2334717 2334728 ATTATTACATAAAAA CATTCCTATAA AAT CTATAGGAATA GAATTTATGCCAAAA TERM 3253 2334737 - 2334717 - g 77 -7.7 -4.12748 | opp_overlap 2334728, overlap 2334715 2334728 TATTACATAAAAACA TTCCTATAA AAT CTATAGGAA TAGAATTTATGCCAA CLK_1529 2334365 - 2335327 + | AraC family transcriptional regulator TERM 3254 2335405 - 2335370 - T 87 -6.4 -5.28942 | opp_overlap 2335370 TATGGTAAACAAAAA GTTATCAAAATACT TTTATATC AGTACTTCGATAAC TTTTTATAATTTATT CLK_1530 2335617 - 2335390 - | hypothetical protein CLK_1531 2336179 - 2335697 - | acetyltransferase CLK_1532 2336756 - 2336604 - | excinuclease ABC subunit C CLK_1533 2337482 - 2336925 - | hypothetical protein CLK_1534 2340441 - 2338078 - | hypothetical protein TERM 3255 2338849 - 2338876 + g 100 -10.8 -4.78752 | opp_overlap 2338854 TGAGTATATATTGGA GGATATAGTTTT CAAA GAAACTATATCC TTTTTCCATTCTAAT TERM 3256 2340044 - 2340021 - G 70 -4 -4.89521 | opp_overlap 2340021 ACAGTTTAAACAAAA TTGAATTAAA AAAT TTAAATTCAA TATTATGCTCAACTA CLK_1535 2341206 - 2340505 - | HNH endonuclease TERM 3257 2340936 - 2340950 + g 76 -2.9 -5.61596 | opp_overlap 2340936 CTGAATAAAATATAT CTAAA CCATT TTTAG TTTTTTTATACACAT TERM 3258 2341336 - 2341318 - R 80 -6 -5.14163 | opp_overlap 2341318, overlap 2341308 ATTTATTAATAAAAA CTCCTTTA TGT TCAAGGAG TTTTTATTTTGATAG TERM 3259 2341318 - 2341336 + r 85 -6 -5.50723 | opp_overlap 2341308 2341318 ATTTATTAATAAAAA CTCCTTTA TGT TCAAGGAG TTTTTATTTTGATAG CLK_1536 2341766 - 2341620 - | hypothetical protein CLK_1537 2343838 - 2342606 - | type IC HsdS subunit hsdM 2345386 - 2343851 - | type I restriction-modification system, M subunit TERM 3260 2345578 - 2345552 - R 88 -8.2 -4.76644 | opp_overlap 2345550 2345555 AATATGCACGAAAAA TAGTAGAAACAA TTT CTATTTCTACTA TCTTTTAATGTAAAT CLK_1539 2348480 - 2345730 - | type I site-specific deoxyribonuclease HsdR family subfamily TERM 3261 2348678 - 2348631 - R 70 -7.4 -3.66742 | opp_overlap 2348637, overlap 2348636 TTTATATAAATAATA CAAAACCTATCTTAAAACTTTA TAAT TAAAAGCTTAAGATAGATTTTA AAATGGAAATGTAAA TERM 3262 2348673 - 2348636 - R 70 -5.1 -4.86029 | opp_overlap 2348637, overlap 2348631 ATAAATAATACAAAA CCTATCTTAAAACTTTA TAAT TAAAAGCTTAAGATAGA TTTTAAAATGGAAAT TERM 3263 2348900 - 2348939 + r 100 -17.4 -3.21747 | opp_overlap 2348900 2348901, overlap 2348901 2348935 GGGATACTTTGGAAA CCTAGTTGAGCTTGCTTA ATTT TGAGCAAGCTCAACTAGA TTAATAATAAGCTAG TERM 3264 2348939 - 2348900 - R 100 -17.4 -3.56643 | opp_overlap 2348900 2348901 2348935, overlap 2348901 GGGATACTTTGGAAA CCTAGTTGAGCTTGCTTA ATTT TGAGCAAGCTCAACTAGA TTAATAATAAGCTAG TERM 3265 2348938 - 2348901 - R 100 -18.7 -2.73771 | opp_overlap 2348900 2348901 2348935, overlap 2348900 GGATACTTTGGAAAC CTAGTTGAGCTTGCTTA ATTT TGAGCAAGCTCAACTAG ATTAATAATAAGCTA TERM 3266 2348901 - 2348938 + r 100 -20.9 -2.52834 | opp_overlap 2348901 2348900, overlap 2348900 2348935 GGATACTTTGGAAAC CTAGTTGAGCTTGCTTA ATTT TGAGCAAGCTCAACTAG ATTAATAATAAGCTA CLK_1540 2349132 - 2349001 - | hypothetical protein TERM 3267 2349381 - 2349357 - R 91 -7.2 -5.45802 | opp_overlap 2349357 TTTGTAAAACAAAAA CAGCAAATCG TTATT CGATTCACTG TTTCAAAATTTAAGT CLK_1541 2350440 - 2349415 - | hypothetical protein TERM 3268 2351325 - 2351335 + r 83 -4 -5.88197 | TAGTAGGCAATCTTG GATA ACT TATC TTTTTTTCTATTTAC TERM 3269 2351496 - 2351521 + r 93 -12 -3.2794 | opp_overlap 2351491 AGCTATATCATCTAG TACCAGCTCA CTGGCA TGAGCTGGTA TTGCTGTAGATAAAA TERM 3270 2351666 - 2351643 - R 100 -7.5 -5.36441 | TTTGGATACAAAAAA GACGCTTCT TTTTAC AGAAACGTC CAATACTTTTAGAGT CLK_1542 2355301 - 2352044 - | hypothetical protein TERM 3271 2354514 - 2354533 + g 72 -7.8 -3.62096 | opp_overlap 2354510 2354508 ATAAAATAAGTGTGA GGAAGGCC CTGT GGCATTCC TTTCGCATAATCAAA CLK_1543 2355896 - 2355294 - | hypothetical protein TERM 3272 2355506 - 2355492 - G 70 -3.6 -5.13722 | overlap 2355487 CCCAGGAAAAGAAAA TCTTTC GTG AAAAGA GATGGTGCCCGTTAA TERM 3273 2356105 - 2356066 - R 100 -16.8 -4.64598 | opp_overlap 2356066 2356074 CAATTATCCTAAAAA GAGACAAAGTTTACGAAA ATAA TTTCCTAAACTTTGTCTC TTTTAGAGCTTATTT TERM 3274 2356066 - 2356105 + r 100 -16.8 -4.17523 | opp_overlap 2356066, overlap 2356074 CAATTATCCTAAAAA GAGACAAAGTTTACGAAA ATAA TTTCCTAAACTTTGTCTC TTTTAGAGCTTATTT CLK_1544 2357421 - 2356252 - | hypothetical protein TERM 3275 2357583 - 2357565 - R 80 -6.1 -5.10767 | CACCTAATATAAAAA TCAAAGA GTTTA TCTTTGA GCATATCATCCACCA TERM 3276 2357664 - 2357715 + r 100 -15.6 -4.75219 | gap 1, opp_overlap 2357670 2357674, overlap 2357667 2357670 CCCATTGCCTTATTT CAAAAACAAACCACATCATGGATAT ACC AT-TCCATGATGTGGTTTGTTCTTA TTTTATTGATAGTTA TERM 3277 2357667 - 2357712 + r 100 -17.3 -4.46587 | gap 1, opp_overlap 2357670 2357674, overlap 2357664 2357670 ATTGCCTTATTTCAA AAACAAACCACATCATGGATAT ACC AT-TCCATGATGTGGTTTGTTC TTATTTTATTGATAG TERM 3278 2357709 - 2357670 - R 100 -19 -4.62069 | gap 1, opp_overlap 2357667 2357664 2357670, overlap 2357674 GCCTTATTTCAAAAA CAAACCACATCATGGATAT ACC AT-TCCATGATGTGGTTTG TTCTTATTTTATTGA TERM 3279 2357670 - 2357709 + r 100 -19 -4.31859 | gap 1, opp_overlap 2357670 2357674, overlap 2357667 2357664 GCCTTATTTCAAAAA CAAACCACATCATGGATAT ACC AT-TCCATGATGTGGTTTG TTCTTATTTTATTGA TERM 3280 2357705 - 2357674 - R 100 -14 -4.87389 | gap 1, opp_overlap 2357670 2357667 2357664, overlap 2357670 TATTTCAAAAACAAA CCACATCATGGATAT ACC AT-TCCATGATGTGG TTTGTTCTTATTTTA CLK_1545 2358633 - 2357749 - | AraC family transcriptional regulator CLK_1546 2359587 - 2358682 - | alpha/beta fold family hydrolase CLK_1547 2360121 - 2359708 - | tetracycline resistance domain-containing protein CLK_1548 2361229 - 2360306 - | NAD-dependent epimerase/dehydratase family protein CLK_1549 2361634 - 2362983 + | glycosyl transferase, group 2 family protein CLK_1550 2363007 - 2365631 + | glycosyl transferase, group 2 family protein TERM 3281 2365660 - 2365690 + T 72 -6.2 -4.4267 | opp_overlap 2365659 2365655 2365660, overlap 2365654 AACTATATGAGAAAG TTGACAATGATCAG TTA TTGCACATTGTCAA TTTTCGGTTTTAAGG CLK_1551 2367942 - 2365987 - | putative tetracycline resistance protein TERM 3282 2368000 - 2367984 - R 79 -7.3 -4.64766 | opp_overlap 2367984 TTTATACTGTAAAAA CTCTCAC TAT GTGAAAG CCTTTTATCTATTCT TERM 3283 2368424 - 2368398 - R 78 -5.3 -5.14985 | gap 1, opp_overlap 2368398 TTAAAGATAGAAAAA CTCTTACCCGTA TTGA TA-AGGTAAGAG TTTTTAATACTATAA CLK_1552 2369913 - 2368531 - | GntR family transcriptional regulator TERM 3284 2368814 - 2368825 + g 78 -4.4 -5.39755 | ATAGTAACATCTCTT CGTA TCCT TACG TTTTTTCTCATTATA TERM 3285 2369498 - 2369523 + g 89 -10.6 -3.76492 | overlap 2369483 CTTAAATGGAGCGCT CCTTTAGGTT CCTCGT AACCTAAAGG TTTCATAGACTTAGA TERM 3286 2370033 - 2369984 - H 78 -9.7 -3.07895 | gap 1, opp_overlap 2369993 2369998 2370004, overlap 2369998 TCTATTTTGAACATA CTTATCCCTCCAAATGATATTATT ATT AATA-TATCATTTGGTTGGATAAA AAACAACCAAGGATG TERM 3287 2369993 - 2370024 + H 82 -9.8 -3.05384 | gap 1, opp_overlap 2369984 2369998, overlap 2369998 2370004 AACATACTTATCCCT CCAAATGATATTATT ATT AATA-TATCATTTGG TTGGATAAAAAACAA TERM 3288 2370052 - 2370037 - H 93 -7.6 -5.24129 | TGGTTGGATAAAAAA CAACCA AGGA TGGTTG AGGATTTTTCACTGC CLK_1553 2370119 - 2371165 + | ornithine cyclodeaminase/mu-crystallin family protein CLK_1554 2371319 - 2372188 + | PhzF family phenazine biosynthesis protein TERM 3289 2372202 - 2372242 + T 82 -5.5 -5.57888 | gap 1, opp_overlap 2372202, overlap 2372203 AACTGTTACTATAAT GGTGAGCTGCTATGAGGC AATTAA GGCT-ATGGCAGCTCACA TTTTGTTTTTTTACT TERM 3290 2372203 - 2372241 + T 81 -9 -3.91073 | gap 1, opp_overlap 2372202, overlap 2372202 ACTGTTACTATAATG GTGAGCTGCTATGAGGC AATTAA GGCT-ATGGCAGCTCAC ATTTTGTTTTTTTAC CLK_1555 2374575 - 2372491 - | putative glycosyl hydrolase TERM 3291 2374830 - 2374775 - R 91 -10.8 -3.68726 | gap 1, opp_overlap 2374786 2374791 2374829, overlap 2374791 AATATGTCAATATAA GCGCAAAAAATAAAAACGCCCCTAAAT TAG ATTTAGCGACGTTTTC-TTATTTACGC TGTAATTAGCATCTT TERM 3292 2374815 - 2374791 - R 100 -7.9 -5.75538 | opp_overlap 2374791 2374786, overlap 2374775 CGCAAAAAATAAAAA CGCCCCTAAAT TAG ATTTAGCGACG TTTTCTTATTTACGC TERM 3293 2374791 - 2374815 + r 75 -5.7 -5.00196 | opp_overlap 2374775 2374791, overlap 2374786 CGCAAAAAATAAAAA CGCCCCTAAAT TAG ATTTAGCGACG TTTTCTTATTTACGC cadA-2 2376715 - 2374844 - | cadmium-translocating P-type ATPase TERM 3294 2375011 - 2375025 + g 82 -5 -5.41746 | AGCTCAAGTTAATCT TGATGG TGG TCATCA TTTTTTTCGAAAGTT TERM 3295 2376731 - 2376776 + r 88 -11.5 -2.91264 | gap 1, overlap 2376734 GCTATAGCACTCCTT TC-ATACCTATAGGGGTATA TGTACAT TGTACCCCTATAGGTATAGG TATGTCAATAAAAAA CLK_1557 2377171 - 2376896 - | hypothetical protein TERM 3296 2377181 - 2377206 + r 90 -10.5 -3.30731 | opp_overlap 2377180 2377179 2377177, overlap 2377179 2377183 2377204 TTTCATAAAAACACC TCCACATACCC TTAG GGGTATGTGTA TATTATACTGATTAA TERM 3297 2377183 - 2377204 + r 100 -13.1 -3.21438 | opp_overlap 2377180 2377179 2377177, overlap 2377181 2377179 TCATAAAAACACCTC CACATACCC TTAG GGGTATGTG TATATTATACTGATT CLK_1558 2377807 - 2377415 - | iron-binding protein, hemerythrin TERM 3298 2378028 - 2378062 + r 100 -16 -4.25606 | opp_overlap 2378033, overlap 2378033 ATCATAAGATAAATG AAAAACGTCGCTAAAT TAG ATTTAGCGACGTTTTC TTATTTTAAATCTTA TERM 3299 2378057 - 2378033 - R 100 -15.9 -5.08367 | opp_overlap 2378028 2378033 AAGATAAATGAAAAA CGTCGCTAAAT TAG ATTTAGCGACG TTTTCTTATTTTAAA TERM 3300 2378033 - 2378057 + r 100 -15.9 -5.093 | opp_overlap 2378033, overlap 2378028 AAGATAAATGAAAAA CGTCGCTAAAT TAG ATTTAGCGACG TTTTCTTATTTTAAA CLK_1559 2378365 - 2378075 - | microcompartments family protein CLK_1560 2379090 - 2378440 - | propanediol utilization protein PduL-like protein eutE 2380688 - 2379090 - | acetaldehyde dehydrogenase (acetylating) CLK_1562 2381547 - 2380723 - | microcompartments family protein CLK_1563 2382230 - 2381568 - | ethanolamine utilization protein EutQ-like protein CLK_1564 2382538 - 2382275 - | putative polyhedral organelle formation protein CLK_1565 2382837 - 2382535 - | hypothetical protein CLK_1566 2383760 - 2382915 - | ethanolamine utilization protein EutJ family protein CLK_1567 2384470 - 2383742 - | hypothetical protein TERM 3301 2384323 - 2384338 + g 72 -4.8 -4.87052 | AATACTTATTTATTT TTGAAT CATC ATTCAA TTTTATTCCTTTATC CLK_1568 2384923 - 2384477 - | EutP/PduV family GTP-binding protein CLK_1569 2385273 - 2384920 - | ethanolamine utilization protein EutS-like protein CLK_1570 2386266 - 2385313 - | glycyl-radical enzyme activating family protein TERM 3302 2386322 - 2386357 + r 86 -9.2 -4.10781 | overlap 2386323 TATATCTTAATTTGT ATCTGCAATCTACA AAACAGGC TGTAGATTGCAGAC TTTATATAAATTATT TERM 3303 2386323 - 2386356 + r 93 -12.7 -3.05384 | overlap 2386322 ATATCTTAATTTGTA TCTGCAATCTACA AAACAGGC TGTAGATTGCAGA CTTTATATAAATTAT CLK_1571 2388970 - 2386430 - | formate acetyltransferase TERM 3304 2387627 - 2387641 + g 77 -5.8 -4.93296 | opp_overlap 2387629 ACGAATAACGTCAAC TATCTT TTT AAGATA TTTTTGTGGTGATGA TERM 3305 2388999 - 2389015 + r 79 -3.8 -5.80951 | overlap 2388988 2388986 ATTCTTTAATGTATT TCATAT ATTAA ATATGA TTTTTTATTTTAAGT CLK_1572 2390513 - 2389020 - | aldehyde dehydrogenase family protein CLK_1573 2390859 - 2390551 - | microcompartments family protein CLK_1574 2391179 - 2390883 - | microcompartments family protein CLK_1575 2391405 - 2391196 - | hypothetical protein CLK_1576 2391750 - 2391484 - | hypothetical protein CLK_1577 2392849 - 2391737 - | hypothetical protein TERM 3306 2392923 - 2392886 - R 71 -6.7 -4.08846 | opp_overlap 2392880, overlap 2392880 2392915 ATAAAAAATTAATAA TATTATAAATTCATATT GTTA AATAAAAATTTATAATA AATATACATTAAGAT TERM 3307 2393183 - 2393216 + r 100 -14.9 -2.68823 | opp_overlap 2393183 2393189, overlap 2393189 CTTAAGTGATAAATA TAGAAATACCTGGAT AATA ATCCAGGTATTTTTA ATTCTATAAAAACAA TERM 3308 2393216 - 2393183 - R 95 -12.7 -3.57808 | opp_overlap 2393183 2393189, overlap 2393189 CTTAAGTGATAAATA TAGAAATACCTGGAT AATA ATCCAGGTATTTTTA ATTCTATAAAAACAA TERM 3309 2393189 - 2393210 + r 100 -11.7 -4.96646 | opp_overlap 2393189 2393183, overlap 2393183 TGATAAATATAGAAA TACCTGGAT AATA ATCCAGGTA TTTTTAATTCTATAA TERM 3310 2393210 - 2393189 - R 100 -11.7 -4.31166 | opp_overlap 2393183 2393189, overlap 2393183 TGATAAATATAGAAA TACCTGGAT AATA ATCCAGGTA TTTTTAATTCTATAA CLK_1578 2394165 - 2393335 - | MerR family transcriptional regulator TERM 3311 2394258 - 2394237 - R 93 -9.5 -4.70613 | AAAATTTGAACAAAA TACCACCCA TTAA TGAGTGGTA TAAAATAGTCTATCC CLK_1579 2395410 - 2394268 - | alcohol dehydrogenase, iron-containing TERM 3312 2395509 - 2395521 + H 70 -4.9 -4.77983 | opp_overlap 2395501 2395509 TAACAATCAAACTAA GTTTA TAA TAAAC TTTTCTTAATGTATT TERM 3313 2395841 - 2395887 + H 88 -4.9 -5.90231 | gap 2 TAGCTTATTTCATGA TACTTAAC-TTTATTCCT-TTAG GTC TTAGTAGGAATAAATGTTAGGTA TTTTTTTATGTTTAT CLK_1580 2395923 - 2397236 + | MATE efflux family protein TERM 3314 2397304 - 2397270 - T 100 -14.6 -4.42667 | opp_overlap 2397270 TCAAAATTATCAAAA CTAACCATCATTATAA CTG TGATAATGATGGTTAG TTTTTTTTTTATTTT TERM 3315 2397270 - 2397304 + T 100 -14.6 -6.71862 | opp_overlap 2397270 TCAAAATTATCAAAA CTAACCATCATTATAA CTG TGATAATGATGGTTAG TTTTTTTTTTATTTT CLK_1581 2398577 - 2397333 - | major facilitator transporter TERM 3316 2398514 - 2398502 - G 74 -7.7 -3.84639 | opp_overlap 2398502 2398499, overlap 2398490 2398485 TAATACCTATAATAA GCATC AAC GATGC TGATTTACGTACTTT CLK_1582 2399307 - 2398618 - | GntR family transcriptional regulator CLK_1583 2399470 - 2400369 + | MarR family transcriptional regulator TERM 3317 2400386 - 2400367 - f 74 -5.2 -5.20331 | AAACAACAAACAAAA TAAAATTA GCTT TAATTTTA ATATAGTAAATTTAA CLK_1584 2400510 - 2400629 + | hypothetical protein CLK_1585 2401413 - 2400709 - | hypothetical protein CLK_1586 2402298 - 2401510 - | hypothetical protein TERM 3318 2402444 - 2402402 - R 75 -7.8 -3.89695 | opp_overlap 2402402 2402409 TCTTTATAAAGAGAA TTCTAAGCTTCAGAGGGAGT TTT ACTACCACTAATGCTTAAAA ATTCTTATCCCAGGG CLK_1587 2403672 - 2402824 - | carboxylesterase CLK_1588 2404054 - 2403692 - | hypothetical protein CLK_1589 2404555 - 2404067 - | excisionase family DNA-binding protein TERM 3319 2404737 - 2404754 + r 73 -2.1 -5.67529 | ATGTCTATTTACTTA TGAATTT TTTG AAATTTA TTTTTGTTTTTAGTT TERM 3320 2404979 - 2405006 + r 75 -6.4 -4.46854 | opp_overlap 2404984, overlap 2404984 AACTTATCCATAAGA AAAAACAGCATT CTAA GATGCTGTTTTA TTTATTCTTCACTAA TERM 3321 2405001 - 2404984 - R 82 -5.6 -5.56673 | opp_overlap 2404984 2404979 ATCCATAAGAAAAAA CAGCAT TCTAAG ATGCTG TTTTATTTATTCTTC TERM 3322 2404984 - 2405001 + r 80 -6.3 -5.18297 | opp_overlap 2404984, overlap 2404979 ATCCATAAGAAAAAA CAGCATT CTAA GATGCTG TTTTATTTATTCTTC CLK_1590 2405636 - 2405004 - | sortase family protein TERM 3323 2405572 - 2405538 - GR 71 -8 -3.43925 | overlap 2405536 TGACCAAGAAATACA TCCTAAGCCTAGGACT ATA ATTCCTAGACTTAAAA CTTTTACCAATGATA CLK_1591 2408298 - 2405611 - | hypothetical protein TERM 3324 2406289 - 2406308 + gr 70 -7.8 -3.36112 | TCCTGAAGTTACATC GTGCTGGT CTGA ACCTGCAC TTAAGTATTTTTTAA TERM 3325 2407123 - 2407147 + gr 72 -5.1 -4.71234 | overlap 2407129 AGCTTGAGCTCCATC TTTAACCATAA AAT TTAAGGTTGAA TTTTCTGTTAGGTTT TERM 3326 2408670 - 2408639 - R 93 -9.6 -4.63527 | opp_overlap 2408627 TTAGTATGCCAAAAA GCCCTAATCACTAT TTCT ATAGCAATTAGGAC TTTATACCATACTTA CLK_1592 2409996 - 2408914 - | hypothetical protein TERM 3327 2409602 - 2409590 - G 78 -6.3 -4.82901 | opp_overlap 2409590 2409589 CCCTTTTCATAAAAA GTTAC CCG GTAAC CTTCTGGTATTTTTT CLK_1593 2410234 - 2409989 - | hypothetical protein CLK_1594 2410743 - 2410252 - | hypothetical protein TERM 3328 2410757 - 2410767 + r 70 -4 -5.23396 | ATAATAATTACCTCA CTAT CAA ATAG TTTTTATTAATTGTT TERM 3329 2411187 - 2411157 - R 100 -14.2 -4.84527 | opp_overlap 2411186 TTTATATATCAAAAA CAGGTAGCCCAATT CAA AATTAGACTACCTG TAAATATACAATTTA CLK_1595 2412263 - 2411223 - | zinc-binding dehydrogenase family oxidoreductase TERM 3330 2411823 - 2411809 - G 76 -6.4 -4.67011 | AACGCTACTGAAAAA CACTCT GTT AGAGCG AGAATATCAAAGGGG CLK_1596 2413187 - 2412330 - | AP endonuclease CLK_1597 2414410 - 2413271 - | putative 3-dehydroquinate synthase TERM 3331 2414632 - 2414655 + r 71 -5.4 -4.72127 | opp_overlap 2414626 TAAATAAATTTCGTA CTACAAATTT CGAT AAATTAGTAG TTATTTTTGTTATTA TERM 3332 2414731 - 2414697 - R 77 -8 -4.11664 | GGGATAAGAATGAAA GACCCAAACACTAG ATGTTTA CTAATGTTCAGGTC TCTTTTATACTCAAA CLK_1598 2415871 - 2414852 - | sensor histidine kinase CLK_1599 2416539 - 2415868 - | DNA-binding response regulator TERM 3333 2416609 - 2416569 - R 78 -8.6 -3.94773 | overlap 2416567 2416572 CCTTAATATAAAATA TAAGACTATTAAACTTTG GGAAA CAAAATCTAATAGCCCTA ATAATTATTATAAGA TERM 3334 2416606 - 2416572 - R 79 -8.1 -4.08271 | overlap 2416569 2416567 TAATATAAAATATAA GACTATTAAACTTTG GGAAA CAAAATCTAATAGCC CTAATAATTATTATA CLK_1600 2417446 - 2416736 - | hypothetical protein CLK_1601 2419547 - 2417439 - | hypothetical protein TERM 3335 2418354 - 2418344 - G 72 -8.2 -3.31792 | TCACTACTGGCATAA GCCC TGA GGGC ATAGTAAGCTGACAT TERM 3336 2418792 - 2418768 - G 70 -8.7 -2.60486 | overlap 2418767 AATAATTTCCATAAG TGCTTCTTTAG ATA CCAAAGAAACA TCAGGTTGATTTATA CLK_1602 2420494 - 2419619 - | ABC transporter, ATP-binding protein TERM 3337 2420383 - 2420400 + g 70 -5.6 -4.33928 | opp_overlap 2420383 CATTAGGTCCTAAAA GTCCAA TAAGAC TTGGAC TTTCTATTTGCAATG CLK_1603 2422548 - 2420554 - | ABC transporter, permease protein TERM 3338 2422705 - 2422728 + r 70 -6 -4.3129 | opp_overlap 2422705 AATACAACAAAAAAA CCTGGACTAA TTAG TTAGCTCAGG TTTTAATGGTGGATA TERM 3339 2422728 - 2422705 - R 90 -6 -5.94214 | opp_overlap 2422705 AATACAACAAAAAAA CCTGGACTAA TTAG TTAGCTCAGG TTTTAATGGTGGATA CLK_1604 2424803 - 2422812 - | ABC transporter, permease protein TERM 3340 2423821 - 2423834 + g 75 -4.5 -5.07652 | opp_overlap 2423821 AATATTCTTATACTA GCATC AAAA GGTGC TTTTATTTTAAACCC CLK_1605 2425560 - 2424793 - | ABC transporter, ATP-binding protein TERM 3341 2425806 - 2425822 + r 75 -6.7 -4.4352 | TATTTTTTATTTGAT CTTAAAA AGT TTTTAAG TTTACTTTTATTTTT TERM 3342 2426004 - 2426043 + r 100 -14.6 -2.90615 | gap 1, opp_overlap 2426007 2426009, overlap 2426008 2426009 2426011 2426011 CCCATTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 3343 2426040 - 2426007 - R 93 -11.9 -3.20747 | gap 1, opp_overlap 2426004 2426008 2426009 2426011 2426011, overlap 2426009 ATTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGGGA TERM 3344 2426008 - 2426040 + r 95 -12.1 -3.60151 | opp_overlap 2426007 2426009, overlap 2426004 2426009 2426011 2426011 TTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGGGA TERM 3345 2426039 - 2426009 - R 100 -15.6 -3.16288 | opp_overlap 2426008 2426004 2426009 2426011 2426011, overlap 2426007 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3346 2426009 - 2426039 + r 100 -15.6 -2.75769 | opp_overlap 2426009 2426007, overlap 2426008 2426004 2426011 2426011 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3347 2426011 - 2426037 + r 89 -12.4 -2.92144 | opp_overlap 2426009 2426007, overlap 2426011 2426009 2426008 2426004 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 3348 2426160 - 2426144 - R 70 -2.9 -5.626 | opp_overlap 2426146, overlap 2426145 2426146 CATCGGATAAAAAAA TCCCTCA CAT TGTGAGA ACTTTTATTTAAGTA TERM 3349 2426248 - 2426237 - R 73 -3 -5.8096 | opp_overlap 2426237 TACAAAAAATAAAAA TTAC TATA GTAA TTTATCTCCTATAGC CLK_1606 2426701 - 2426348 - | hypothetical protein TERM 3350 2427012 - 2426982 - R 82 -9.1 -4.04811 | opp_overlap 2426983 2426988, overlap 2426983 2426988 ATAAATTATTATAAA GCAAAAGCTCCCA GATTA TGAGAGCTTTTGT TTTTGTTATTTAATT TERM 3351 2427011 - 2426983 - R 93 -12.6 -3.01802 | opp_overlap 2426983 2426988, overlap 2426982 2426988 TAAATTATTATAAAG CAAAAGCTCCCA GATTA TGAGAGCTTTTG TTTTTGTTATTTAAT TERM 3352 2426983 - 2427011 + r 100 -10.4 -5.39905 | opp_overlap 2426982 2426983 2426988, overlap 2426988 TAAATTATTATAAAG CAAAAGCTCCCA GATTA TGAGAGCTTTTG TTTTTGTTATTTAAT TERM 3353 2426988 - 2427006 + r 76 -4.5 -5.44638 | opp_overlap 2426983 2426982 2426988, overlap 2426983 TATTATAAAGCAAAA GCTCCCA GATTA TGAGAGC TTTTGTTTTTGTTAT TERM 3354 2427006 - 2426988 - R 77 -6.7 -4.63479 | opp_overlap 2426988 2426983, overlap 2426983 2426982 TATTATAAAGCAAAA GCTCCCA GATTA TGAGAGC TTTTGTTTTTGTTAT CLK_1607 2429120 - 2427027 - | PRD domain-containing protein TERM 3355 2428679 - 2428696 + g 76 -6.3 -4.66746 | TTTTTATGCCTTGTC CCTTTGA ACTT TCAAGGG TTATTTTATTTTCTG CLK_1608 2430696 - 2429332 - | PTS system, L-ascorbate family, IIC component CLK_1609 2430993 - 2430709 - | PTS system, L-ascorbate family, IIB component CLK_1610 2431459 - 2431022 - | PTS system, L-ascorbate family, IIA component CLK_1611 2432199 - 2431483 - | transaldolase TERM 3356 2432426 - 2432396 - R 100 -10.7 -5.72053 | CAATCAAATAAAAAA GGATACTGATAAA ATACA TTTATCAATATCC TAAAAAGTACAATTA CLK_1612 2433204 - 2432470 - | hypothetical protein TERM 3357 2432525 - 2432540 + g 70 -4 -4.92385 | overlap 2432523 CGTGCTTGTGATACT GTTGTT TCAT AACAGC TTTTCTTTAAATATC CLK_1613 2433567 - 2434271 + | peptidase, M24 family protein CLK_1614 2434345 - 2435751 + | amino acid/peptide transporter TERM 3358 2435781 - 2435817 + T 71 -6.7 -4.19506 | opp_overlap 2435781 ATTACAAAACAAAAA CCTATCTTTAGCCTT ATATTTC AATGCTTAAGATAGG TTTTAAAGTTAAAAT TERM 3359 2435817 - 2435781 - T 91 -7.4 -5.56263 | opp_overlap 2435781 ATTACAAAACAAAAA CCTATCTTTAGCCTTA TATTT CAATGCTTAAGATAGG TTTTAAAGTTAAAAT CLK_1615 2436594 - 2435854 - | hypothetical protein CLK_1616 2437491 - 2436601 - | AraC family transcriptional regulator TERM 3360 2437950 - 2437931 - g 73 -3.6 -5.32396 | opp_overlap 2437935, overlap 2437935 2437936 2437939 ATATGAAAAACAAAA TTAAGGTA TTAG TACCTTTA GTACTCATCCTATCA CLK_1617 2437918 - 2438430 + | hypothetical protein TERM 3361 2438531 - 2438505 - T 80 -3.1 -5.8901 | gap 1, opp_overlap 2438505 2438529 ATAGAAAACAAAAAA CTAGATATGGAT ATAA AACCAT-TCTAG TTTTTTTGCAAAGCT TERM 3362 2438505 - 2438531 + T 70 -3.1 -5.40474 | gap 1, opp_overlap 2438505, overlap 2438529 ATAGAAAACAAAAAA CTAGATATGGAT ATAA AACCAT-TCTAG TTTTTTTGCAAAGCT enr 2440548 - 2438551 - | 2-enoate reductase TERM 3363 2439278 - 2439294 + g 73 -8.7 -3.20723 | opp_overlap 2439278 2439276 TTGTGTCCACGAATA GCTGCAA CTC TTGCGGC TTCCATTCCTGCAAC CLK_1619 2441440 - 2440643 - | MerR family transcriptional regulator TERM 3364 2441803 - 2441746 - R 71 -8.1 -3.09365 | gap 1, opp_overlap 2441751 2441752, overlap 2441763 CACTATATAAATAAC TCTATATATACTAAAAAGCACTC-TCCT ATA AGGTTGAATGCTTTTTAGTATACTTATA TAAATTATTTTTACT TERM 3365 2441751 - 2441798 + r 72 -8 -3.58231 | gap 1, opp_overlap 2441746 2441763, overlap 2441752 TATAAATAACTCTAT ATATACTAAAAAGCACTC-TCCT ATA AGGTTGAATGCTTTTTAGTATAC TTATATAAATTATTT TERM 3366 2441752 - 2441797 + r 86 -11.5 -2.73854 | gap 1, opp_overlap 2441746 2441763, overlap 2441751 ATAAATAACTCTATA TATACTAAAAAGCACTC-TCCT ATA AGGTTGAATGCTTTTTAGTATA CTTATATAAATTATT CLK_1620 2442915 - 2442154 - | hypothetical protein CLK_1621 2443272 - 2443105 - | hypothetical protein CLK_1622 2443508 - 2443972 + | acetyltransferase TERM 3367 2444021 - 2444000 - T 100 -14.5 -2.84634 | opp_overlap 2443993 CGTCATATCATCACA TCCGGCTTC CAAG GAAGCCGGA TTAGGCATGTACTCC CLK_1623 2444276 - 2444106 - | hypothetical protein CLK_1624 2444277 - 2444417 + | hypothetical protein CLK_1625 2444798 - 2444565 - | hypothetical protein TERM 3368 2445573 - 2445542 - R 70 -5.2 -4.86001 | opp_overlap 2445542 ATTATGGCATAAAAA CACCGTAAAATTCA AATT TGAATAATACAGTG TTTTAGTAAATCGTT CLK_1626 2446235 - 2445660 - | acetyltransferase CLK_1627 2446703 - 2447158 + | hypothetical protein TERM 3369 2447214 - 2447192 - f 78 -8.4 -3.95555 | opp_overlap 2447194, overlap 2447194 AGAAGTATTTATAAA GAGCCCTCAC ACT GTGAGAGCTT TTCTTCTTTTATCTC TERM 3370 2447212 - 2447194 - f 95 -11 -3.56226 | opp_overlap 2447194, overlap 2447192 AAGTATTTATAAAGA GCCCTCAC ACT GTGAGAGC TTTTCTTCTTTTATC TERM 3371 2447194 - 2447212 + F 100 -8.8 -5.12916 | opp_overlap 2447192 2447194 AAGTATTTATAAAGA GCCCTCAC ACT GTGAGAGC TTTTCTTCTTTTATC TERM 3372 2447551 - 2447569 + G 75 -4.7 -5.02502 | ATGAGAATTAGACCT CTATATT TAGTT AATATAG TTTTTATATCATATA CLK_1628 2447296 - 2448195 + | hypothetical protein TERM 3373 2449074 - 2449094 + G 70 -5.6 -4.20074 | opp_overlap 2449076 GGATTATGGCCGCAA TATATATG GTAGG CATATATA TTTTGAACTATATTT CLK_1629 2448686 - 2450005 + | amino acid permease family protein hgdC 2451054 - 2450281 - | 2-hydroxyglutaryl-CoA dehydratase component A TERM 3374 2450865 - 2450876 + g 71 -2.2 -5.43414 | GGATTCTGCCATAAC CTGT AACT ACGG TTTTTTCTATATCCT CLK_1631 2452624 - 2451134 - | hypothetical protein TERM 3375 2452694 - 2452704 + r 73 -2.6 -5.64274 | ATTAAGACAATCCTA TTAA ATA TTAA TTTTTTTATAACTAA TERM 3376 2452861 - 2452823 - R 95 -11.3 -3.79113 | gap 1, opp_overlap 2452823 ATTTCTTTATAATAA CCTCCCTGATTCTAATAT CTTT AAATTAGAAT-AGGGAGG TTTATAATAAAATAC TERM 3377 2452823 - 2452861 + r 100 -11.3 -3.9712 | gap 1, opp_overlap 2452823 ATTTCTTTATAATAA CCTCCCTGATTCTAATAT CTTT AAATTAGAAT-AGGGAGG TTTATAATAAAATAC CLK_1632 2453974 - 2452925 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLK_1633 2454778 - 2453993 - | electron transfer flavoprotein, beta subunit/FixA family protein CLK_1634 2455950 - 2454817 - | acyl-CoA dehydrogenase family protein TERM 3378 2455479 - 2455493 + g 70 -3.6 -5.16151 | opp_overlap 2455466 AGTCACAAATAGGTG CATTTG TAA TAAATG TTTTTCTTCCATTTA CLK_1635 2456318 - 2456190 - | hypothetical protein TERM 3379 2456225 - 2456238 + g 71 -6.7 -3.89822 | ATAAAGTTATCCATA TGCCT AAAT AGGCA TTTATCCCATGACTA TERM 3380 2456368 - 2456315 - G 100 -13.3 -3.53444 | opp_overlap 2456315 2456316 2456319, overlap 2456316 2456318 CTACGTCCCTGGAAA CCACTTCCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTTAAGCTTAGAAATCGA TTTATTAAATTTAAA TERM 3381 2456315 - 2456368 + g 74 -6.7 -4.29326 | opp_overlap 2456315 2456316 2456318, overlap 2456316 2456319 CTACGTCCCTGGAAA CCACTTCCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTTAAGCTTAGAAATCGA TTTATTAAATTTAAA TERM 3382 2456316 - 2456367 + g 81 -10.2 -3.16873 | opp_overlap 2456315 2456316 2456318, overlap 2456315 2456319 TACGTCCCTGGAAAC CACTTCCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTTAAGCTTAGAAATCG ATTTATTAAATTTAA TERM 3383 2456367 - 2456316 - G 100 -14.6 -2.71924 | opp_overlap 2456316 2456315 2456319, overlap 2456315 2456318 TACGTCCCTGGAAAC CACTTCCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTTAAGCTTAGAAATCG ATTTATTAAATTTAA TERM 3384 2456365 - 2456318 - R 93 -13.6 -2.90496 | opp_overlap 2456316 2456315 2456319, overlap 2456316 2456315 CGTCCCTGGAAACCA CTTCCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTTAAGCTTAGAAAT CGATTTATTAAATTT TERM 3385 2456319 - 2456364 + r 100 -14.9 -2.76941 | opp_overlap 2456318 2456316 2456315, overlap 2456316 2456315 GTCCCTGGAAACCAC TTCCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTTAAGCTTAGAAA TCGATTTATTAAATT CLK_1636 2457572 - 2456445 - | putative R-2-hydroxyglutaryl-CoA dehydratase, beta subunit CLK_1637 2458804 - 2457572 - | putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit TERM 3386 2458601 - 2458625 + g 74 -6.4 -4.45485 | overlap 2458605 AGATAAAGATTCTTT CTTAGCTGCA ACCCC TGCAGCTTGG TTTTCTGGATATAAT TERM 3387 2458605 - 2458621 + g 74 -8 -3.76186 | overlap 2458601 AAAGATTCTTTCTTA GCTGCA ACCCC TGCAGC TTGGTTTTCTGGATA CLK_1638 2460081 - 2458867 - | putative hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase CLK_1639 2461643 - 2460825 - | iron-sulfur cluster-binding protein TERM 3388 2462372 - 2462356 - g 75 -4.5 -5.04987 | overlap 2462359 AATACCTTGAAAAAA TATGCAT GAA ATACATA CTAGAGCCCCTTAAG CLK_1640 2462196 - 2463467 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit TERM 3389 2464053 - 2464016 - g 74 -8.7 -3.30104 | opp_overlap 2464025 2464027, overlap 2464015 TGTACAGGAGAAAAT TTCATATTAGATAAATC ACCG GATTTGTCTAATATGGA TGAACTAATTTTATG TERM 3390 2464247 - 2464230 - g 71 -2.1 -5.34655 | CAATTAAAAAGAAAA TTAATAT TCCC ATACTAA AGATTGAAACTGATT CLK_1641 2463470 - 2465164 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit/putative R-2-hydroxyglutaryl-CoA dehydratase activase CLK_1642 2466614 - 2465463 - | putative methyl-accepting chemotaxis protein TERM 3391 2465772 - 2465794 + g 70 -6.4 -4.06905 | opp_overlap 2465788 CTTTGTTTCATCAGC TATCTCCTTT ATA AAAGAAGATA TTTCATTAATTTCTT TERM 3392 2467143 - 2467191 + r 100 -15.7 -4.32903 | opp_overlap 2467143 2467151 2467154, overlap 2467146 CAAGAATATTTTAAA TGCTAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTATTA TTTTAACTATTTAAT TERM 3393 2467191 - 2467143 - R 100 -15.7 -3.69332 | opp_overlap 2467143 2467146, overlap 2467151 2467154 CAAGAATATTTTAAA TGCTAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTATTA TTTTAACTATTTAAT TERM 3394 2467146 - 2467188 + r 100 -19.6 -4.2651 | opp_overlap 2467143 2467151 2467154, overlap 2467143 GAATATTTTAAATGC TAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTA TTATTTTAACTATTT TERM 3395 2467183 - 2467151 - R 100 -17.3 -3.12668 | opp_overlap 2467146 2467143, overlap 2467143 2467154 TTTTAAATGCTAATA TAATTAAGCTCCCAC AAT GTGAGAGCTTAATTA TATTATTATTTTAAC TERM 3396 2467180 - 2467154 - R 100 -14.6 -3.7014 | opp_overlap 2467146 2467143, overlap 2467151 2467143 TAAATGCTAATATAA TTAAGCTCCCAC AAT GTGAGAGCTTAA TTATATTATTATTTT CLK_1643 2467797 - 2467198 - | hypothetical protein CLK_1644 2468804 - 2468211 - | acetyltransferase CLK_1645 2469149 - 2469562 + | fosfomycin resistance protein TERM 3397 2469628 - 2469599 - T 100 -10.9 -4.45168 | opp_overlap 2469597 2469596 2469604 2469608 TTCTTAAAATATAAA TTAAGGAAAGTCA TTTC TGGCTTTCCTTAA AAATTGATATATTAT TERM 3398 2469646 - 2469632 - T 71 -5.8 -4.56597 | opp_overlap 2469631 GGCTTTCCTTAAAAA TTGATA TAT TATCAA CATTATTCTAAAACA TERM 3399 2469686 - 2469713 + T 95 -11.4 -3.60899 | opp_overlap 2469686, overlap 2469682 TTTATTAAAGTAAAA TCCAGCTGAAAT AAAA ACTTCAGCTGGA TTCATTTACATTTTA TERM 3400 2469713 - 2469686 - T 100 -13.6 -4.58773 | opp_overlap 2469686 2469682 TTTATTAAAGTAAAA TCCAGCTGAAAT AAAA ACTTCAGCTGGA TTCATTTACATTTTA gntP 2471114 - 2469726 - | gluconate permease TERM 3401 2470834 - 2470818 - G 70 -8.1 -3.05384 | opp_overlap 2470821, overlap 2470821 TCTTTTTTTACCTAA GAACTTT ATA AAAGTTC TAGCCATTCTCTCCG pdxA 2472345 - 2471341 - | 4-hydroxythreonine-4-phosphate dehydrogenase CLK_1648 2473695 - 2472358 - | hypothetical protein TERM 3402 2473383 - 2473355 - G 76 -8.9 -3.53444 | opp_overlap 2473358, overlap 2473358 2473379 TTAGCCTCTGGGAAA GATGGTACCACAG CAG CTATAGTACCTTC TGGAAGGGCGTCTAA TERM 3403 2473380 - 2473358 - G 73 -9.2 -2.60496 | opp_overlap 2473358, overlap 2473355 2473379 GCCTCTGGGAAAGAT GGTACCACAG CAG CTATAGTACC TTCTGGAAGGGCGTC CLK_1649 2474518 - 2473760 - | DeoR family transcriptional regulator TERM 3404 2475066 - 2475041 - R 73 -5.4 -4.84918 | overlap 2475034 TCTACAAATATAAAA GCACCCAGCC GTTATA AGCTGAATGC TCTTTATAATCTTAT CLK_1650 2476039 - 2475146 - | CAAX amino terminal protease family protein TERM 3405 2475389 - 2475399 + g 70 -4 -4.85599 | TCCGCAGGCTCCCCA CAAA TTC TTTG TTTTTATAACATACA TERM 3406 2475858 - 2475839 - G 82 -4.4 -5.56263 | gap 1, overlap 2475833 AGTAGAAAATAAAAA CCCTGTTAT TAG ATAA-AGGG AAAAATTAATTGGTG CLK_1651 2476454 - 2477839 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3407 2477920 - 2477965 + T 85 -8.6 -4.6902 | gap 1, opp_overlap 2477925, overlap 2477923 2477925 AACTTCGATAACTCT TTAA-AGGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCCTCTTCA TTTTTAACATTATAG TERM 3408 2477923 - 2477961 + T 95 -11.9 -3.82528 | opp_overlap 2477925, overlap 2477920 2477925 TTCGATAACTCTTTA AAGGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCCTC TTCATTTTTAACATT TERM 3409 2477925 - 2477959 + T 100 -14.5 -3.48505 | opp_overlap 2477925, overlap 2477923 2477920 CGATAACTCTTTAAA GGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCC TCTTCATTTTTAACA TERM 3410 2477959 - 2477925 - T 100 -16.7 -3.58533 | opp_overlap 2477925 2477923 2477920 CGATAACTCTTTAAA GGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCC TCTTCATTTTTAACA CLK_1652 2478171 - 2478007 - | hypothetical protein CLK_1653 2478882 - 2478289 - | TetR family transcriptional regulator TERM 3411 2479302 - 2479315 + G 71 -2.4 -5.40474 | ATAGATCGCTCCATA GGTA TATTAC TACC TTTTTTTCAAAAAAT CLK_1654 2479026 - 2479553 + | hypothetical protein CLK_1655 2479695 - 2480348 + | hypothetical protein TERM 3412 2482511 - 2482501 - g 71 -6.8 -3.90897 | TAAATATGATAAGAA TGCC CTA GGCA CGTATATTAATACAT CLK_1656 2480504 - 2482966 + | hypothetical protein TERM 3413 2483015 - 2482977 - T 100 -12.1 -4.60041 | opp_overlap 2482977 ATTGATTCTTAAAAA TATTTAACCTACTATAA ACAAA TTTTAGTAGGTTAAATA TTTGATCTAAAATAA TERM 3414 2482977 - 2483015 + T 100 -12.1 -3.83998 | opp_overlap 2482977 ATTGATTCTTAAAAA TATTTAACCTACTATAA ACAAA TTTTAGTAGGTTAAATA TTTGATCTAAAATAA CLK_1657 2484109 - 2483036 - | zinc-binding dehydrogenase family oxidoreductase TERM 3415 2484308 - 2484318 + r 73 -5.4 -4.88067 | GCACACTTTTTTCAA GATG AAG CATC TTTTTATCCGTAACT TERM 3416 2484526 - 2484485 - R 100 -9.9 -5.06414 | gap 1, opp_overlap 2484484 2484489 2484493, overlap 2484471 2484489 GTTTCTTAATAAAAA TAAAGAAATAACTAC-AAAT TTT ATTTCGTAGTTATTTCTTGA ATTAGTCTGAATTTA TERM 3417 2484489 - 2484522 + r 87 -10.7 -3.22521 | gap 1, opp_overlap 2484471 2484485 2484489, overlap 2484484 2484493 CTTAATAAAAATAAA GAAATAACTAC-AAAT TTT ATTTCGTAGTTATTTC TTGAATTAGTCTGAA TERM 3418 2484522 - 2484489 - R 100 -10.7 -5.05606 | gap 1, opp_overlap 2484489 2484484 2484493, overlap 2484471 2484485 CTTAATAAAAATAAA GAAATAACTAC-AAAT TTT ATTTCGTAGTTATTTC TTGAATTAGTCTGAA CLK_1658 2486507 - 2484543 - | carbon monoxide dehydrogenase TERM 3419 2485587 - 2485599 + g 73 -5.5 -4.68103 | AAGTCCCTTTGCACC GGCTG CCT TAGCC TTTTGTTGAACTTCA TERM 3420 2486576 - 2486597 + H 70 -6 -4.32201 | opp_overlap 2486557 ATATCTCTATAATGC TATACCAT AAGCCA ATGGTATA TTTTCACTTCCTTCC hypA 2487302 - 2487643 + | hydrogenase nickel insertion protein HypA TERM 3421 2487814 - 2487804 - g 76 -2.6 -5.56673 | AGCCATAATAAAAAA TATT AAT AATA GGGAAAAATTAGCGG hypB 2487646 - 2488284 + | hydrogenase accessory protein HypB TERM 3422 2488301 - 2488274 - T 85 -10 -3.18467 | opp_overlap 2488274, overlap 2488276 AAATTTGCAATTTAA TAGGTGGTTAAT TAAA ACTAACCACCCA TGTACTTATTCGTTG TERM 3423 2488299 - 2488276 - T 87 -10.4 -3.15056 | opp_overlap 2488274, overlap 2488274 ATTTGCAATTTAATA GGTGGTTAAT TAAA ACTAACCACC CATGTACTTATTCGT CLK_1661 2488663 - 2488307 - | dinitrogenase iron-molybdenum cofactor family protein CLK_1662 2489604 - 2488759 - | iron-sulfur binding protein CLK_1663 2490428 - 2489595 - | iron-sulfur binding protein CLK_1664 2490812 - 2490453 - | dinitrogenase iron-molybdenum cofactor family protein TERM 3424 2491043 - 2491065 + r 83 -3.5 -6.06529 | opp_overlap 2491043 TAAAAAACATAAAAC CCTATAG ACTTTACAC CTATAGG TTTTTTTTATCTATA CLK_1665 2491592 - 2491215 - | hypothetical protein motB 2492651 - 2491887 - | chemotaxis MotB protein motA 2493454 - 2492669 - | chemotaxis protein MotA CLK_1668 2493483 - 2493614 + | hypothetical protein TERM 3425 2493863 - 2493838 - T 100 -10.5 -5.0916 | opp_overlap 2493838 TTCTCAATATAAAAA GCCCTATAGGT TTTC ACCTACAGAGC TTTACTTTATAAACT CLK_1669 2494586 - 2493963 - | hypothetical protein TERM 3426 2494784 - 2494762 - R 75 -5.6 -4.98522 | opp_overlap 2494762 AATTTCATACAAAAA GAGCCCTA TTCAATT TAGGACTC TCTTCAAAATAAGGA CLK_1670 2495388 - 2495050 - | hypothetical protein CLK_1671 2497349 - 2495394 - | OPT family oligopeptide transporter pepD 2498912 - 2497467 - | aminoacyl-histidine dipeptidase TERM 3427 2499398 - 2499348 - R 100 -13.2 -4.08064 | opp_overlap 2499340 2499353, overlap 2499353 AAGGGTGTTTTAAAA TAAAATAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTATTTTG AGACAAACCCTTCTA TERM 3428 2499393 - 2499353 - R 100 -13.1 -5.07652 | opp_overlap 2499353, overlap 2499348 TGTTTTAAAATAAAA TAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTA TTTTGAGACAAACCC TERM 3429 2499353 - 2499393 + r 82 -8.7 -4.07568 | opp_overlap 2499353 2499348 TGTTTTAAAATAAAA TAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTA TTTTGAGACAAACCC CLK_1673 2500498 - 2499470 - | putative low specificity L-threonine aldolase CLK_1674 2501204 - 2501350 + | hypothetical protein TERM 3430 2501672 - 2501683 + F 71 -5.8 -4.58283 | TTGCAACCTTGGCTA CTCC CAAA GGAG TTTTTCCAAAGATTG CLK_1677 2502875 - 2503672 + | short chain dehydrogenase/reductase family oxidoreductase CLK_1678 2505373 - 2504195 - | putative sodium extrusion protein NatB TERM 3431 2505062 - 2505072 + g 76 -6.8 -4.39568 | opp_overlap 2505062 TATGTTTTCATCAAA TCCC TTT GGGA TTTTAATCTGTAGAT CLK_1679 2506106 - 2505387 - | putative sodium extrusion ATP-binding protein NatA TERM 3432 2506401 - 2506370 - R 73 -9.1 -2.87548 | opp_overlap 2506398, overlap 2506363 2506362 AATAATACTATGATA TTTCATAAAATAA GAGTAG TTATTTTATGAAA AGTGGGTGTAACAAA TERM 3433 2506398 - 2506452 + r 100 -16.9 -5.05712 | gap 1, opp_overlap 2506370 2506403 GAGTAGTTATTTTAT GAAAAGTGGGTGTAACAAAATT-GCT TTAA AGTTAGTTTTGTTACACCCACTTTAC TTTTTACTTATTTAT TERM 3434 2506447 - 2506403 - R 100 -11 -4.26903 | gap 1, opp_overlap 2506398 GTTATTTTATGAAAA GTGGGTGTAACAAAA-TTGCT TTAA AGTTAGTTTTGTTACACCCAC TTTACTTTTTACTTA CLK_1680 2507027 - 2506572 - | acetyltransferase CLK_1681 2507505 - 2507041 - | MarR family transcriptional regulator TERM 3435 2507544 - 2507523 - H 79 -8.9 -3.54741 | opp_overlap 2507523 TACCACCTTTCGAAA TTTACTTGA ACTT TCAAGTAAA TTTACTCTAACACTT TERM 3436 2507523 - 2507544 + H 81 -8.9 -3.8377 | opp_overlap 2507523 TACCACCTTTCGAAA TTTACTTGA ACTT TCAAGTAAA TTTACTCTAACACTT CLK_1682 2507924 - 2508055 + | hypothetical protein TERM 3437 2508132 - 2508166 + T 70 -5.2 -4.79667 | opp_overlap 2508132 AAACAAAAGTAAAAA TGCTGTCTTAAAAT ATATTTA ATTTTGAAACAGCA TTTTTGCTCCATTTT TERM 3438 2508166 - 2508132 - T 74 -5.2 -5.19819 | opp_overlap 2508132 AAACAAAAGTAAAAA TGCTGTCTTAAAAT ATATTTA ATTTTGAAACAGCA TTTTTGCTCCATTTT CLK_1683 2508665 - 2508261 - | hypothetical protein TERM 3439 2508951 - 2508925 - R 75 -8.1 -3.53779 | opp_overlap 2508925, overlap 2508919 2508928 TGTCTAAAATACGAA TAAGAGCCACT TTTAT AGCGACTCTTA TTTTTAATATGCTAA TERM 3440 2508973 - 2508999 + r 77 -6.8 -4.67234 | overlap 2508975 ATATGCTAAATATTG GGTTTTAAATAA TTT TTATTTAAAAGC TTTTTAAAGTTCAGT CLK_1684 2510126 - 2509056 - | uroporphyrinogen decarboxylase family protein TERM 3441 2510574 - 2510533 - R 80 -8.3 -4.24606 | AAGTTATACCTAAAA TGTAAATAAGAGCTACT TTTTTATT AGCAACCCTTATTTACA TCTTAATCATTTCCT CLK_1685 2512064 - 2510616 - | oxidoreductase, FAD/[2Fe-2S]-binding TERM 3442 2510966 - 2510976 + g 82 -4 -5.5604 | GCTTTCTGTAGGGAT TGAA TTT TTCA TTTTTTATTAATTGC TERM 3443 2512400 - 2512389 - H 70 -4.4 -5.07053 | AATGAGCTCAAAAAA CACA TATA TGTG AGGTATATATAAATG TERM 3444 2513215 - 2513194 - g 82 -10.9 -2.79135 | overlap 2513193 AGAATCCTGAAGAAT GGGTAACAG AAGT CTGCTACCC TGTAAAAAAGAAATA CLK_1686 2512413 - 2513231 + | MerR family transcriptional regulator TERM 3445 2513249 - 2513270 + T 100 -8 -5.94214 | opp_overlap 2513247, overlap 2513250 CTACATGACAAATGC TGCCTGCT TTAAAT AGCAGGCG TTTTTTTGTTATCTT TERM 3446 2513250 - 2513269 + T 86 -9.3 -4.12868 | opp_overlap 2513247, overlap 2513249 TACATGACAAATGCT GCCTGCT TTAAAT AGCAGGC GTTTTTTTGTTATCT TERM 3447 2513367 - 2513339 - T 100 -12.6 -4.82855 | TATCAAATTTAAAAA GCTGCTGACAAA ATATA TTTGTCAACAGC CTGAAATTTATCAAA CLK_1687 2514843 - 2513440 - | amino acid permease family protein TERM 3448 2513825 - 2513835 + g 75 -4 -5.20328 | TTATTACCATTCTTA TATG CGC CATA TTTATTTTTTTCAAA TERM 3449 2514138 - 2514164 + g 78 -6.6 -4.65916 | opp_overlap 2514145, overlap 2514140 AAGCAATCATACCTT TTGAAAATCCTG TTT CCGGATTTTCCA TTTTATTAACATAGG TERM 3450 2514140 - 2514162 + g 73 -9.2 -2.62958 | opp_overlap 2514145, overlap 2514138 GCAATCATACCTTTT GAAAATCCTG TTT CCGGATTTTC CATTTTATTAACATA TERM 3451 2514250 - 2514238 - G 77 -4.9 -5.243 | CAAATTAGTAAAAAA TTTTG TAT CAAAA GTTGGCATAAAGGTT TERM 3452 2515182 - 2515165 - R 100 -8.4 -5.32599 | opp_overlap 2515165 TACAAAATAGAAAAA GCGCCT GATTTT AGGCGC TTCTCTACTATTTAT TERM 3453 2515165 - 2515182 + r 79 -9.1 -3.63138 | opp_overlap 2515165 TACAAAATAGAAAAA GCGCCTG ATTT TAGGCGC TTCTCTACTATTTAT CLK_1688 2515820 - 2515278 - | putative phosphatase CLK_1689 2515949 - 2515833 - | hypothetical protein CLK_1690 2516461 - 2516204 - | hypothetical protein TERM 3454 2516798 - 2516751 - H 70 -8 -3.30124 | opp_overlap 2516756 2516758, overlap 2516736 2516756 2516758 CCTTATTCTTTAGAA TAAAATGGTTTGCATAGGAACT AATT AATTCGTATGCAAACTATTTTT TTATATAATACAGGG TERM 3455 2516793 - 2516756 - H 86 -7.9 -4.77165 | opp_overlap 2516756 2516758, overlap 2516751 2516758 TTCTTTAGAATAAAA TGGTTTGCATAGGAACT AATT AATTCGTATGCAAACTA TTTTTTTATATAATA TERM 3456 2516756 - 2516793 + H 100 -7.9 -5.74122 | opp_overlap 2516751 2516756 2516758, overlap 2516758 TTCTTTAGAATAAAA TGGTTTGCATAGGAACT AATT AATTCGTATGCAAACTA TTTTTTTATATAATA TERM 3457 2516791 - 2516758 - H 81 -10.5 -2.67008 | opp_overlap 2516758 2516756, overlap 2516756 2516751 CTTTAGAATAAAATG GTTTGCATAGGAACT AATT AATTCGTATGCAAAC TATTTTTTTATATAA TERM 3458 2516758 - 2516791 + H 82 -8.3 -4.50122 | opp_overlap 2516756 2516751 2516758, overlap 2516756 CTTTAGAATAAAATG GTTTGCATAGGAACT AATT AATTCGTATGCAAAC TATTTTTTTATATAA CLK_1691 2517056 - 2517217 + | hypothetical protein CLK_1692 2517235 - 2517666 + | MarR family transcriptional regulator CLK_1693 2517669 - 2518061 + | hypothetical protein TERM 3459 2518112 - 2518153 + T 72 -6 -4.41047 | opp_overlap 2518106 2518114, overlap 2518114 ACATATTAACTTTAA CAGCATCTAGAGCTAG CGAACTTTAT CTAACTCTAGATGCTA TTTTAATTAAAAAAT TERM 3460 2518114 - 2518151 + T 76 -8.6 -3.8125 | opp_overlap 2518106 2518114, overlap 2518112 ATATTAACTTTAACA GCATCTAGAGCTAG CGAACTTTAT CTAACTCTAGATGC TATTTTAATTAAAAA TERM 3461 2518151 - 2518114 - T 85 -10.8 -3.10732 | opp_overlap 2518114 2518112, overlap 2518106 ATATTAACTTTAACA GCATCTAGAGCTAG CGAACTTTAT CTAACTCTAGATGC TATTTTAATTAAAAA CLK_1694 2518514 - 2518134 - | ATP-binding protein thiM 2519773 - 2518976 - | hydroxyethylthiazole kinase TERM 3462 2519552 - 2519571 + g 74 -5.1 -4.90002 | ATAAGATGTTTTACC TGAAATC AACATA GATTTCA TTTTATTATCTGTTA thiW 2520320 - 2519751 - | thiW protein TERM 3463 2520226 - 2520211 - G 71 -4.6 -4.79657 | opp_overlap 2520211 AGAATATTAATAAAA TGGGCC ATAG GGCACA TTCCTTCAATACGAA TERM 3464 2520606 - 2520579 - R 95 -8.5 -5.23765 | opp_overlap 2520579 GAAACAACATAAAAA TGGGATACACC AAATAA GGCATATCCCA TTATACTTACAAAAA CLK_1697 2521200 - 2520763 - | acetyltransferase CLK_1698 2522064 - 2521336 - | metallo-beta-lactamase family protein TERM 3465 2522205 - 2522240 + r 100 -14.3 -5.4433 | opp_overlap 2522205 TACCAATAATAAAAA TCGGTGTTAATTATC AATTAA GATGATTAACACCGA TTTTTATTTATATAT TERM 3466 2522240 - 2522205 - R 100 -12.1 -5.31855 | opp_overlap 2522205 TACCAATAATAAAAA TCGGTGTTAATTATC AATTAA GATGATTAACACCGA TTTTTATTTATATAT CLK_1699 2522520 - 2522248 - | hypothetical protein TERM 3467 2522457 - 2522484 + g 93 -11.6 -3.3164 | opp_overlap 2522461 AATATCCACCTTCCA TATATTCTTGAA TTAA TTCAAGAATATA TTCTGGCAGTACATT CLK_1700 2522717 - 2522583 - | hypothetical protein bioD 2523488 - 2522805 - | dethiobiotin synthase bioB 2524447 - 2523491 - | biotin synthase CLK_1703 2525000 - 2524440 - | BioY family protein TERM 3468 2525060 - 2525096 + r 73 -2.5 -5.80727 | opp_overlap 2525060 TAATCATATAAAAAA GTATTGTCAACTT ATTTTTTTTGA AAGTTAACAATAC TTTTTTATTCTTTTT TERM 3469 2525096 - 2525060 - R 77 -4.7 -5.42131 | opp_overlap 2525060 TAATCATATAAAAAA GTATTGTCAACTT ATTTTTTTTGA AAGTTAACAATAC TTTTTTATTCTTTTT CLK_1704 2525469 - 2525140 - | hypothetical protein CLK_1705 2525885 - 2525457 - | MarR family transcriptional regulator TERM 3470 2526015 - 2525990 - R 100 -7.7 -5.80951 | opp_overlap 2525990 AGCTAAAATAAAAAA GAGATACTCAA ACTC TTAAGCATCTC TTTAACCTTATTTAA CLK_1706 2526623 - 2526027 - | hypothetical protein CLK_1707 2526801 - 2528594 + | M24 family metallopeptidase CLK_1708 2528625 - 2530022 + | amino acid/peptide transporter TERM 3471 2530064 - 2530096 + T 91 -10.8 -3.79668 | opp_overlap 2530064 ACAATAATACAAAAA GACTATAATGCTAT TAACT ATAGCACTATAGTC TTTCCTAACTTAAAT TERM 3472 2530096 - 2530064 - T 100 -13 -5.21506 | opp_overlap 2530064 ACAATAATACAAAAA GACTATAATGCTAT TAACT ATAGCACTATAGTC TTTCCTAACTTAAAT CLK_1709 2530391 - 2530137 - | hypothetical protein TERM 3473 2530226 - 2530206 - G 100 -10.5 -5.37043 | opp_overlap 2530206 2530209 ATTCCATACAAAAAA GAACCCTAT TTG ATAGGGCTC TTTTTTTAAGTAAGG TERM 3474 2530206 - 2530226 + g 95 -8.3 -5.47218 | opp_overlap 2530206, overlap 2530209 ATTCCATACAAAAAA GAACCCTAT TTG ATAGGGCTC TTTTTTTAAGTAAGG TERM 3475 2530209 - 2530223 + g 73 -8.6 -3.21573 | opp_overlap 2530206, overlap 2530206 CCATACAAAAAAGAA CCCTAT TTG ATAGGG CTCTTTTTTTAAGTA TERM 3476 2530513 - 2530496 - R 70 -3.4 -5.38951 | opp_overlap 2530496 AATGTATATAAAAAA GACACC TTTTAC AGTGTC TTAATTCATATATTT CLK_1710 2530812 - 2530564 - | hypothetical protein CLK_1711 2531402 - 2531133 - | hypothetical protein CLK_1712 2531669 - 2532001 + | hypothetical protein TERM 3477 2532015 - 2532051 + T 90 -10.4 -3.46602 | opp_overlap 2532014 2532012 2532016 2532029, overlap 2532016 AATTTAATATAATAT AGGACAGTTTAATATA TTTTT TATATTAAGCTGTCCA TTCTAATATAAAAAA TERM 3478 2532050 - 2532016 - T 93 -11.7 -3.27784 | opp_overlap 2532015 2532016, overlap 2532014 2532012 2532029 ATTTAATATAATATA GGACAGTTTAATATA TTTTT TATATTAAGCTGTCC ATTCTAATATAAAAA TERM 3479 2532016 - 2532050 + T 100 -13.9 -2.67747 | opp_overlap 2532016 2532014 2532012 2532029, overlap 2532015 ATTTAATATAATATA GGACAGTTTAATATA TTTTT TATATTAAGCTGTCC ATTCTAATATAAAAA CLK_1713 2533167 - 2532166 - | choloylglycine hydrolase family protein TERM 3480 2533303 - 2533274 - R 100 -8.1 -5.27938 | gap 1, opp_overlap 2533274 2533276 2533302 ATTTGTAAATAAAAA TACCGCA-TATTCA TAT TGAATAATACGGTA TAATGTAATTATATA CLK_1714 2533946 - 2533365 - | hypothetical protein TERM 3481 2534296 - 2534273 - R 100 -12.6 -3.87062 | opp_overlap 2534264 2534261, overlap 2534264 AATTAACAATCTAAA GGATTGGTAT TTAA ATACCAATCC TAGAAAATCATAAAT CLK_1715 2534556 - 2534413 - | hypothetical protein CLK_1716 2534971 - 2534843 - | hypothetical protein TERM 3482 2534891 - 2534905 + g 71 -2.1 -5.37345 | TCTTTTTACTATATC TAGCT TTAAT AGCTG TTTTTTATCATTGCC TERM 3483 2535017 - 2535002 - R 100 -9 -5.76633 | opp_overlap 2535004 TTATATATAAAAAAA GAGCTC TTAC GAGCTC TTAAAAAATTCTCAA CLK_1717 2535232 - 2535029 - | hypothetical protein TERM 3484 2535373 - 2535399 + r 77 -6.6 -4.58563 | AATAGTTTTAGCACT GGCTGTATCAAG GTG TTTGATACGACC TTCTTTTTCTAATTA CLK_1718 2535664 - 2535551 - | hypothetical protein CLK_1719 2536056 - 2535868 - | putative phage surface protein CLK_1720 2536349 - 2536681 + | hypothetical protein CLK_1721 2536827 - 2536714 - | hypothetical protein TERM 3485 2536822 - 2536799 - G 100 -12.5 -5.06414 | opp_overlap 2536793 2536790 2536803 CCTTTTGAATAAAAA GGCACTTGG TTAATT CCAAGTGCC TTCAAGTGCTTTTTA CLK_1722 2537141 - 2538124 + | oxidoreductase family protein TERM 3486 2538158 - 2538137 - T 100 -14.5 -4.89393 | opp_overlap 2538135 2538134 TAAACTTTAGAAAAA CCCCAGGTA TTTC TACCTGGGG CCCTTTGAATAACTT CLK_1723 2538386 - 2538219 - | hypothetical protein TERM 3487 2538650 - 2538622 - R 100 -9 -5.67529 | AAGGAAAAATAAAAA GCTGCTGACAAA ATATA TTTATCAACAGC CTAAGATAGCTTCTT CLK_1724 2538960 - 2538685 - | hypothetical protein TERM 3488 2539151 - 2539124 - R 85 -8.6 -4.69053 | opp_overlap 2539124 GACTATGCAATAAAA GCACATACTA TTATTACT TAGTATGTGC TTCTTAATTACTTTA TERM 3489 2539124 - 2539151 + r 78 -8.6 -3.87638 | opp_overlap 2539124 GACTATGCAATAAAA GCACATACTA TTATTACT TAGTATGTGC TTCTTAATTACTTTA CLK_1725 2539757 - 2539164 - | putative lipoprotein TERM 3490 2539888 - 2539925 + r 79 -8.9 -3.56594 | opp_overlap 2539891 2539894, overlap 2539891 2539905 TTCTTTTCAATTTTA TAATAATAATAAATTAT TAAT AAAATTTATTATTATTA TTTAAACAACTTTAA msrB 2540372 - 2539923 - | methionine-R-sulfoxide reductase TERM 3491 2540098 - 2540110 + g 74 -6.3 -4.43501 | CTTACTTCTGTTCTA GTCAT TTC ATGAC TTTTATCAATAGATT TERM 3492 2540536 - 2540501 - R 85 -6.2 -5.46129 | opp_overlap 2540509, overlap 2540508 2540509 TAACAAATTAAAAAA TTATAAAGCCCCATGT ATTT ACATGGGGTTTTTGAA TAATATGAATAAAGA TERM 3493 2540529 - 2540508 - R 84 -8.7 -4.3179 | opp_overlap 2540509, overlap 2540501 2540509 TTAAAAAATTATAAA GCCCCATGT ATTT ACATGGGGT TTTTGAATAATATGA TERM 3494 2540528 - 2540509 - R 93 -12.2 -3.17447 | opp_overlap 2540509, overlap 2540508 2540501 TAAAAAATTATAAAG CCCCATGT ATTT ACATGGGG TTTTTGAATAATATG TERM 3495 2540509 - 2540528 + r 100 -12.2 -4.69664 | opp_overlap 2540508 2540501 2540509 TAAAAAATTATAAAG CCCCATGT ATTT ACATGGGG TTTTTGAATAATATG sodF 2541200 - 2540604 - | Mn/Fe superoxide dismutase CLK_1728 2543057 - 2541312 - | putative ABC transporter, ATP-binding/permease protein CLK_1729 2544849 - 2543050 - | putative ABC transporter, ATP-binding/permease protein TERM 3496 2544955 - 2544920 - R 78 -9.2 -2.93975 | opp_overlap 2544923, overlap 2544919 2544917 AGCCTCTAAAAATAC TTATAGGGATTAGTTA AAAT TAACTAATCCCTATTT TAATCTGCTAAAGGT TERM 3497 2544923 - 2544952 + r 100 -15.3 -4.371 | opp_overlap 2544920 2544919 2544917 CTCTAAAAATACTTA TAGGGATTAGTTA AAAT TAACTAATCCCTA TTTTAATCTGCTAAA CLK_1730 2546088 - 2545129 - | AraC family transcriptional regulator TERM 3498 2546417 - 2546374 - R 100 -14.2 -4.35646 | gap 1, opp_overlap 2546374 2546371, overlap 2546347 ACATGTAAATAGAAA TGCCCCTTATTGTAGCTTCAT TAT ATATAG-TACAATAAGGGGCA TCGTTGTAATCTCAA TERM 3499 2546374 - 2546417 + r 89 -12 -2.88069 | gap 1, opp_overlap 2546347 2546374, overlap 2546371 ACATGTAAATAGAAA TGCCCCTTATTGTAGCTTCAT TAT ATATAG-TACAATAAGGGGCA TCGTTGTAATCTCAA CLK_1731 2547307 - 2546573 - | hypothetical protein CLK_1732 2548089 - 2547343 - | hypothetical protein CLK_1733 2549002 - 2548082 - | antibiotic ABC transporter, ATP-binding protein TERM 3500 2549078 - 2549026 - R 71 -6.6 -4.1822 | gap 1, opp_overlap 2549033, overlap 2549028 2549029 CTCCATTTTAATAAA TAGTTAAGGATTACCCCTCATCCAT ATTT ATAG-TAAGGGATAATCCTTAAATT CAAGCTACGTAATTA TERM 3501 2549076 - 2549028 - R 84 -9.2 -3.69068 | gap 1, opp_overlap 2549033, overlap 2549026 2549029 CCATTTTAATAAATA GTTAAGGATTACCCCTCATCCAT ATTT ATAG-TAAGGGATAATCCTTAAA TTCAAGCTACGTAAT TERM 3502 2549075 - 2549029 - R 91 -12.7 -2.80958 | gap 1, opp_overlap 2549033, overlap 2549028 2549026 CATTTTAATAAATAG TTAAGGATTACCCCTCATCCAT ATTT ATAG-TAAGGGATAATCCTTAA ATTCAAGCTACGTAA CLK_1734 2550115 - 2549204 - | sensor histidine kinase CLK_1735 2550819 - 2550112 - | DNA-binding response regulator TERM 3503 2550681 - 2550693 + g 72 -4.9 -4.8543 | opp_overlap 2550681 TTACCATATGATAAT TTTCA CCT TGAAA TTTTTCTACAGCTTC TERM 3504 2550843 - 2550862 + r 70 -5.2 -4.82855 | opp_overlap 2550845 CTTATATACTAAATC TATAATAA AAAT TTATTATA TTTTTCCCTTTCATA TERM 3505 2551334 - 2551365 + r 85 -8.2 -4.60255 | opp_overlap 2551334 CAGTAAATATAAAAA CACTGTATTATTCA AATT TTAATAATGCAGTG TTTTTACAAACTTAT TERM 3506 2551365 - 2551334 - R 80 -6 -5.22289 | opp_overlap 2551334 CAGTAAATATAAAAA CACTGTATTATTCA AATT TTAATAATGCAGTG TTTTTACAAACTTAT CLK_1736 2552214 - 2551438 - | methyltransferase TERM 3507 2552273 - 2552315 + H 83 -9.7 -3.64487 | opp_overlap 2552273 2552284, overlap 2552276 TATCAATGCTGAATA TAGTATTATAATTAAATAA AGTGC TTATTTAATTATGATATTA TTATTGAAAATATAC TERM 3508 2552276 - 2552312 + H 86 -9.2 -3.95324 | opp_overlap 2552273 2552284, overlap 2552273 CAATGCTGAATATAG TATTATAATTAAATAA AGTGC TTATTTAATTATGATA TTATTATTGAAAATA CLK_1737 2552486 - 2553088 + | putative exonuclease CLK_1738 2553341 - 2553105 - | putative DNA-binding protein TERM 3509 2553577 - 2553537 - R 82 -5.3 -5.52096 | opp_overlap 2553542 2553543, overlap 2553538 2553540 2553541 AAATGTAATAAAAAA CTATCAGGCCAGATGCTTA ATC TAGGCATCTGGCCGTTTTG CTTTTAATAATATAG TERM 3510 2553573 - 2553540 - R 79 -8.9 -3.5087 | gap 1, opp_overlap 2553542 2553543, overlap 2553538 2553537 2553541 TGTAATAAAAAACTA TCAGGCCAGATGCTTA ATC TAGGCATCTGGCC-GT TTTGCTTTTAATAAT TERM 3511 2553572 - 2553541 - R 88 -12.4 -2.69438 | gap 1, opp_overlap 2553542 2553543, overlap 2553540 2553538 2553537 GTAATAAAAAACTAT CAGGCCAGATGCTTA ATC TAGGCATCTGGCC-G TTTTGCTTTTAATAA TERM 3512 2553542 - 2553572 + r 100 -14.8 -4.70319 | opp_overlap 2553541 2553540 2553538 2553537, overlap 2553543 TAATAAAAAACTATC AGGCCAGATGCTTA ATC TAGGCATCTGGCCG TTTTGCTTTTAATAA TERM 3513 2553543 - 2553571 + r 100 -18.3 -3.41107 | opp_overlap 2553541 2553540 2553538 2553537, overlap 2553542 AATAAAAAACTATCA GGCCAGATGCTTA ATC TAGGCATCTGGCC GTTTTGCTTTTAATA CLK_1739 2554402 - 2553581 - | putative protein-glutamine gamma-glutamyltransferase TERM 3514 2554097 - 2554109 + g 74 -7.7 -3.83768 | AAAGATATCCCTTAT GGCAT CAG ATGCC TTTACATGTTCTTTT CLK_1740 2555394 - 2554399 - | hypothetical protein TERM 3515 2555523 - 2555508 - R 74 -4.8 -5.19275 | ACTCACAAAATAAAA GTATTT ATTT AAATAC CCTCCAAATTAAAGC TERM 3516 2556142 - 2556176 + r 86 -9.4 -4.1391 | opp_overlap 2556150, overlap 2556150 CCTTAAAAATCCATT TATAAAAAGCCCTCAC AAC GTGAGAGCTTTTTAAG TTATTCTTCTATTTT TERM 3517 2556168 - 2556150 - R 100 -11 -4.88067 | opp_overlap 2556142 2556150 ATCCATTTATAAAAA GCCCTCAC AAC GTGAGAGC TTTTTAAGTTATTCT TERM 3518 2556150 - 2556168 + r 93 -8.8 -4.82333 | opp_overlap 2556150, overlap 2556142 ATCCATTTATAAAAA GCCCTCAC AAC GTGAGAGC TTTTTAAGTTATTCT CLK_1741 2556942 - 2556265 - | hypothetical protein CLK_1742 2557396 - 2556947 - | hypothetical protein CLK_1743 2561039 - 2557401 - | stage V sporulation protein K TERM 3519 2558028 - 2558040 + g 77 -7.7 -4.06502 | TGCCACCATAGTTTT TCCTG TTC CAGGA TTTCCTTTAAAGATC CLK_1744 2561551 - 2561823 + | hypothetical protein CLK_1745 2561807 - 2562115 + | glucose-inhibited division protein A TERM 3520 2562297 - 2562311 + T 70 -4.4 -4.93454 | opp_overlap 2562286 GAAATCTATAACGGT TATAAA TAT TTTATA TTTTGTATTTATTTC CLK_1746 2562586 - 2562473 - | hypothetical protein CLK_1747 2562974 - 2562669 - | hypothetical protein CLK_1748 2563491 - 2562967 - | hypothetical protein CLK_1749 2563924 - 2563472 - | hypothetical protein CLK_1750 2564433 - 2563921 - | ECF subfamily RNA polymerase sigma factor TERM 3521 2564060 - 2564048 - G 78 -6.3 -4.84761 | ATATCTTTACAAAAA TAGCT TAT AGCTA CAGTTCTGTAAGGCT TERM 3522 2564660 - 2564626 - R 100 -8.1 -5.58209 | opp_overlap 2564626 CTAAATCTAAAAAAA TAACCTTAGTCAC ATAATATCA ATGACTAAGGTTA TTTTTCGTAATAAAA TERM 3523 2564626 - 2564660 + r 81 -7.4 -4.77036 | opp_overlap 2564626 CTAAATCTAAAAAAA TAACCTTAGTCA CATAATATCAA TGACTAAGGTTA TTTTTCGTAATAAAA CLK_1751 2565993 - 2564887 - | spore germination protein CLK_1752 2567379 - 2566672 - | YdfR family membrane protein TERM 3524 2567203 - 2567178 - G 79 -8.3 -3.89182 | GAACAATAATCCAAA CTACAAGAGCA ATAA TGCCCCCGTAG ATACTTATACTTTCA CLK_1753 2569027 - 2567675 - | polyA polymerase family protein CLK_1754 2570027 - 2569017 - | hypothetical protein TERM 3525 2570170 - 2570150 - R 83 -4 -5.96894 | opp_overlap 2570150 2570145 ATTTAAATAAAAAAA GTAATGCT AGCTA AGCAATAC TTTTAATTTTTATGC CLK_1755 2571032 - 2570208 - | putative membrane-associated protease CLK_1756 2571489 - 2571223 - | hypothetical protein CLK_1757 2571791 - 2572123 + | PadR family transcriptional regulator TERM 3526 2572838 - 2572824 - g 81 -2.8 -5.8187 | overlap 2572826 GAGCCAATAAAAAAA GGTGAT CCT ATCATC ATAACAAAAATAGAT CLK_1758 2572197 - 2572901 + | hypothetical protein TERM 3527 2572969 - 2572936 - T 74 -6.2 -4.68593 | opp_overlap 2572931 2572936 TTCAGCATCTAAAAA GCTTTCCATGAT AAAATAATAA ATCATAGAAAGC TTTTACTATCTTTTA CLK_1759 2574225 - 2572975 - | sensor histidine kinase CLK_1760 2574898 - 2574218 - | DNA-binding response regulator CLK_1761 2575430 - 2574891 - | UBA/TS-N domain-containing protein TERM 3528 2575103 - 2575119 + g 80 -2.3 -5.72622 | overlap 2575101 TAAGTGGAATCTTTA GAAACAT TCT ATCTTTC TTTTTTATTTCTAAA TERM 3529 2575535 - 2575567 + r 100 -13.8 -3.52307 | opp_overlap 2575526 2575535 2575539, overlap 2575539 ATATAACTTTAAAAA TAAAGAGATTTTGA TATTT TCAAAATCTCTTTA TTATACTATATATTA TERM 3530 2575567 - 2575535 - R 100 -13.8 -4.69622 | opp_overlap 2575535 2575539, overlap 2575526 2575539 ATATAACTTTAAAAA TAAAGAGATTTTGA TATTT TCAAAATCTCTTTA TTATACTATATATTA TERM 3531 2575539 - 2575563 + r 100 -10.2 -4.38273 | opp_overlap 2575539 2575535, overlap 2575535 AACTTTAAAAATAAA GAGATTTTGA TATTT TCAAAATCTC TTTATTATACTATAT TERM 3532 2575563 - 2575539 - R 100 -10.2 -4.88293 | opp_overlap 2575535 2575539, overlap 2575535 AACTTTAAAAATAAA GAGATTTTGA TATTT TCAAAATCTC TTTATTATACTATAT CLK_1762 2576122 - 2575580 - | hypothetical protein CLK_1763 2576338 - 2576216 - | hypothetical protein CLK_1764 2577467 - 2576460 - | beta-lactamase TERM 3533 2576929 - 2576944 + g 75 -4.7 -5.08601 | TTAGCAAACTCACGA GCACT CATGCC AGTGC TTTTTGTTAAAATGG CLK_1765 2579840 - 2577468 - | excinuclease ABC subunit A CLK_1766 2580768 - 2579860 - | AraC family transcriptional regulator CLK_1767 2582788 - 2581523 - | aminotransferase CLK_1768 2583495 - 2583382 - | hypothetical protein TERM 3534 2583463 - 2583481 + g 76 -7.6 -4.02334 | overlap 2583472 ACCATAAGATAATCC TCTAAATT TTA AATTTAGA TTTATAATATACATA TERM 3535 2583608 - 2583626 + r 79 -8.8 -3.51556 | opp_overlap 2583608, overlap 2583606 2583600 ATTCAGTTATAAAAA GCCCTCAC AAT GTGAGAGC TCTTTAAGTTATTCT TERM 3536 2583626 - 2583608 - R 100 -11 -4.88067 | opp_overlap 2583608 2583606 2583600 ATTCAGTTATAAAAA GCCCTCAC AAT GTGAGAGC TCTTTAAGTTATTCT TERM 3537 2583764 - 2583739 - R 100 -11.3 -5.93252 | opp_overlap 2583739 TGCAAAAATAAAAAA GAAAGGTCCTA AAAT TAAGACCTTTC TTTTTTGATGTTCCG TERM 3538 2583739 - 2583764 + r 100 -9.1 -5.27779 | opp_overlap 2583739 TGCAAAAATAAAAAA GAAAGGTCCTA AAAT TAAGACCTTTC TTTTTTGATGTTCCG CLK_1769 2584713 - 2583904 - | hypothetical protein TERM 3539 2584347 - 2584363 + g 82 -6.7 -4.98436 | TATTTTGTCTTGTAT TTTTGAT TTC ATCAAAA TTTTTATAATATTGA TERM 3540 2584845 - 2584871 + H 82 -8.3 -4.52589 | opp_overlap 2584850 2584853 TTTCTTAAAGCCTAA TTAAACAATAA AAAGA TTATTGTTTAA TTTTATGTAACAAAA gidA-1 2585014 - 2586291 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3541 2586299 - 2586318 + T 89 -9.3 -4.28651 | opp_overlap 2586296 2586299 TAGTATAAAAATTTA GGAGCCA AGATTA TGGCTCC TTTTAAAATTTTCAT TERM 3542 2586318 - 2586299 - T 76 -9.3 -2.89738 | opp_overlap 2586299, overlap 2586296 TAGTATAAAAATTTA GGAGCCA AGATTA TGGCTCC TTTTAAAATTTTCAT purB 2587772 - 2586342 - | adenylosuccinate lyase TERM 3543 2587048 - 2587058 + g 70 -5.4 -4.68384 | opp_overlap 2587046 2587048 AATGTATTTAATATA GTTG AAT CAAC TTTTCTTGGATAGGT CLK_1772 2588024 - 2588245 + | hypothetical protein TERM 3544 2588264 - 2588248 - T 83 -6.5 -5.15682 | opp_overlap 2588248 AAAACATAAATAAAA GGCTCCC CAA AAGAGCC CTTAATTTTTATTCT ptsH 2588530 - 2588273 - | phosphocarrier protein HPr aspB 2589834 - 2588641 - | aspartate aminotransferase TERM 3545 2590444 - 2590476 + r 100 -18.1 -4.91511 | opp_overlap 2590447 TGTTCATGCTATTGA TAAGACCTTAAGATT TTT AATCTTAAGGTCTTA TTTTTCTCCTAAACT TERM 3546 2590473 - 2590447 - R 100 -15.4 -3.36327 | opp_overlap 2590444 TCATGCTATTGATAA GACCTTAAGATT TTT AATCTTAAGGTC TTATTTTTCTCCTAA CLK_1775 2590878 - 2590522 - | hypothetical protein CLK_1776 2592158 - 2590875 - | hypothetical protein TERM 3547 2591298 - 2591311 + g 86 -5.3 -5.61277 | TATCCATTCTTTAGC TGCTT TATT AAGCA TTTTATTTTTTTGTG TERM 3548 2591525 - 2591542 + g 70 -8.5 -3.10843 | opp_overlap 2591518 2591527, overlap 2591524 TAATTAAAGCTACTA CAGCTAT TATT ATAGCTG ATTTTAAAGGTTTTA TERM 3549 2591629 - 2591619 - G 74 -3.2 -5.35721 | ATATAATAAGAAAAA TGGC TTT ACCA TAGTAGTTGCTCCTA TERM 3550 2592083 - 2592099 + g 72 -5.3 -4.75288 | opp_overlap 2592083 GCATAGATAAACCTA TTATTAT TTT ATAATAA TTTGTTTTACTATAA CLK_1777 2593043 - 2592177 - | UbiA family prenyltransferase TERM 3551 2592906 - 2592927 + g 71 -3.2 -5.28755 | opp_overlap 2592901 2592906 CGAAGTTAAACAAAA TAATATAA ATGTTA TTATATTA TTTTTTAATATGTTT TERM 3552 2593188 - 2593155 - R 74 -6.1 -4.65933 | opp_overlap 2593160, overlap 2593160 CATTTTCAAAATAAA TTAAAGGACTTGAAT ATAA ATTCAAGCCCTTTTG TTTTATGTTTTTAAT TERM 3553 2593160 - 2593183 + r 100 -8.2 -5.2894 | opp_overlap 2593155 2593160 TCAAAATAAATTAAA GGACTTGAAT ATAA ATTCAAGCCC TTTTGTTTTATGTTT TERM 3554 2593183 - 2593160 - R 95 -10.4 -4.32131 | opp_overlap 2593160, overlap 2593155 TCAAAATAAATTAAA GGACTTGAAT ATAA ATTCAAGCCC TTTTGTTTTATGTTT spoVS 2593466 - 2593206 - | stage V sporulation protein S TERM 3555 2593587 - 2593539 - R 100 -10.8 -5.27769 | opp_overlap 2593532 2593539, overlap 2593532 ACAAAAAATTAAAAA TTCCTTTTAAATTTTGTAAATT TTAGC AACTTATAAAACTTAAAAGGAA TTTATTTTATAATCT TERM 3556 2593539 - 2593587 + r 88 -8.6 -4.81357 | opp_overlap 2593532 2593539, overlap 2593532 ACAAAAAATTAAAAA TTCCTTTTAAATTTTGTAAATT TTAGC AACTTATAAAACTTAAAAGGAA TTTATTTTATAATCT CLK_1779 2595146 - 2593605 - | HDIG/HD/KH domain-containing protein TERM 3557 2595377 - 2595361 - R 88 -6.6 -5.60993 | opp_overlap 2595361 2595356 2595364, overlap 2595364 TTTTTCATAAAAAAA GTAGGA TAAAC TCCTAC TTTTATCCTTCCTTA TERM 3558 2595361 - 2595377 + r 77 -6.6 -4.58213 | opp_overlap 2595361 2595364, overlap 2595356 2595364 TTTTTCATAAAAAAA GTAGGA TAAAC TCCTAC TTTTATCCTTCCTTA recA 2596447 - 2595380 - | recA protein TERM 3559 2596561 - 2596519 - R 93 -12.4 -3.15056 | opp_overlap 2596522 2596528 2596560, overlap 2596522 2596524 2596528 2596533 2596560 AGGGTCAACTTAATA TAATATAAATAAAAGCTCCC TAC AGGAACTTTTATTTAAATTA TTGACAATATATCTT TERM 3560 2596558 - 2596522 - R 84 -9.7 -3.71686 | opp_overlap 2596522 2596528, overlap 2596519 2596524 2596528 2596533 GTCAACTTAATATAA TATAAATAAAAGCTCCC TAC AGGAACTTTTATTTAAA TTATTGACAATATAT TERM 3561 2596556 - 2596524 - R 95 -12.3 -3.43553 | opp_overlap 2596522 2596528, overlap 2596522 2596519 2596528 2596533 CAACTTAATATAATA TAAATAAAAGCTCCC TAC AGGAACTTTTATTTA AATTATTGACAATAT TERM 3562 2596552 - 2596528 - R 84 -8.7 -4.34444 | opp_overlap 2596522 2596528, overlap 2596524 2596522 2596519 2596533 TTAATATAATATAAA TAAAAGCTCCC TAC AGGAACTTTTA TTTAAATTATTGACA TERM 3563 2596547 - 2596533 - R 73 -4.2 -5.11389 | opp_overlap 2596528 2596522, overlap 2596528 2596524 2596522 2596519 ATAATATAAATAAAA GCTCCC TAC AGGAAC TTTTATTTAAATTAT pgsA 2597170 - 2596586 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 3564 2597083 - 2597093 + g 75 -4 -5.20216 | overlap 2597080 TAGCTATTACTGTAC CATA GGG TATG TTTTTTACTGATATA CLK_1782 2598491 - 2597154 - | RNA modification protein TERM 3565 2598346 - 2598374 + g 74 -7.5 -3.97051 | opp_overlap 2598345 2598346 2598349, overlap 2598347 2598349 GCGGTTTCAATAAAT CCACAGGTATTTA CTA TAATTACCTGTGC TTCTTTAGGATCTTT TERM 3566 2598347 - 2598373 + g 83 -11 -2.97146 | opp_overlap 2598346 2598345 2598349, overlap 2598346 2598349 CGGTTTCAATAAATC CACAGGTATTTA CTA TAATTACCTGTG CTTCTTTAGGATCTT ftsK 2600862 - 2598586 - | DNA translocase FtsK/SpoIIIE TERM 3567 2598993 - 2599005 + g 72 -4.9 -4.91109 | AAAATAGCATATCTC CTTTT CCT AAAAG TTTTTCTGCTCCAGA TERM 3568 2599968 - 2599987 + g 72 -4.4 -5.08255 | CTTTTTTATCTTGTT TATTTAGT TTTG ACTGAATA TTTTGTTTTAAAAGT clpP 2602035 - 2601343 - | Clp protease TERM 3569 2602091 - 2602042 - R 79 -8.1 -4.06687 | gap 1, opp_overlap 2602045, overlap 2602043 2602045 ATCTGCCATAAATAA TTACCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGGTAC TATACATAAAAAATA TERM 3570 2602090 - 2602043 - R 90 -11.6 -3.0353 | gap 1, opp_overlap 2602045, overlap 2602042 2602045 TCTGCCATAAATAAT TACCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGGTA CTATACATAAAAAAT TERM 3571 2602045 - 2602088 + r 79 -9.9 -2.64616 | gap 1, opp_overlap 2602045 2602043 2602042 TGCCATAAATAATTA CCTCCTACCATATGCATA TAAATATCT TGTGCATATGGTAG-AGG TACTATACATAAAAA TERM 3572 2602088 - 2602045 - R 82 -9.8 -3.07135 | gap 1, opp_overlap 2602045, overlap 2602043 2602042 TGCCATAAATAATTA CCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGG TACTATACATAAAAA dapG 2603489 - 2602284 - | aspartokinase I CLK_1786 2603777 - 2603505 - | PRC-barrel domain-containing protein CLK_1787 2605155 - 2603854 - | M16 family peptidase TERM 3573 2605322 - 2605299 - R 83 -6.8 -5.26316 | opp_overlap 2605299 2605305, overlap 2605305 TCACTTCATAAAAAA TAAAAAGGCA GATA TGCCCTTCTA TTTTTTATTATTTAT TERM 3574 2605299 - 2605322 + r 73 -2.4 -5.74288 | opp_overlap 2605299 2605305, overlap 2605305 TCACTTCATAAAAAA TAAAAAGGCA GATA TGCCCTTCTA TTTTTTATTATTTAT TERM 3575 2605316 - 2605305 - R 86 -5.8 -5.8096 | opp_overlap 2605299 2605305, overlap 2605299 CATAAAAAATAAAAA GGCA GATA TGCC CTTCTATTTTTTATT pnpA 2607438 - 2605330 - | polyribonucleotide nucleotidyltransferase TERM 3576 2607695 - 2607666 - R 70 -5.9 -4.32049 | gap 1, opp_overlap 2607665 2607671, overlap 2607671 TATAATTTATTAAAA TAAT-AGAGCGG GCTTTAG CCGCTCTTATTA CTTTTATTACTTTCT TERM 3577 2607689 - 2607671 - R 70 -7.4 -3.72481 | opp_overlap 2607671 2607665, overlap 2607666 TTTATTAAAATAATA GAGCGG GCTTTAG CCGCTC TTATTACTTTTATTA TERM 3578 2607671 - 2607689 + r 73 -7.4 -4.0219 | opp_overlap 2607666 2607671, overlap 2607665 TTTATTAAAATAATA GAGCGG GCTTTAG CCGCTC TTATTACTTTTATTA rpsO 2608016 - 2607702 - | ribosomal protein S15 TERM 3579 2608103 - 2608072 - R 75 -7.6 -3.85969 | opp_overlap 2608069 2608072 2608071 2608073 2608079, overlap 2608069 2608073 CAAATAAATATATAA TTGTAAATTAATTT TTAT AAATTAATTTACAT ACTTTGTCTTTTAGC TERM 3580 2608073 - 2608102 + r 90 -11.1 -3.18509 | opp_overlap 2608069 2608072 2608073, overlap 2608069 2608072 2608071 2608079 AAATAAATATATAAT TGTAAATTAATTT TTAT AAATTAATTTACA TACTTTGTCTTTTAG TERM 3581 2608102 - 2608073 - R 85 -11.1 -2.89955 | opp_overlap 2608069 2608073 2608072 2608071 2608079, overlap 2608069 2608072 AAATAAATATATAAT TGTAAATTAATTT TTAT AAATTAATTTACA TACTTTGTCTTTTAG ribF 2609018 - 2608098 - | riboflavin biosynthesis protein RibF truB 2609900 - 2609031 - | tRNA pseudouridine synthase B TERM 3582 2609102 - 2609120 + g 72 -4.7 -4.94168 | TAAAATTATCATCTT CTATATA AGTTC TATATAG TTTGTTTTCTTCTAT TERM 3583 2609473 - 2609453 - G 81 -8.5 -4.24204 | opp_overlap 2609453 GATCTATACTTAAAA TACATATAT CAT ATATATGTA TTTTTCTCGCTTCTC TERM 3584 2609453 - 2609473 + g 90 -8.5 -4.93318 | opp_overlap 2609453 GATCTATACTTAAAA TACATATAT CAT ATATATGTA TTTTTCTCGCTTCTC TERM 3585 2609617 - 2609633 + g 73 -3.7 -5.18726 | TTTTCTACTTCTGTA GAAGATA CAC TAACTTC TTTTTCTTCTAACAC TERM 3586 2609917 - 2609933 + r 79 -2.3 -6.00086 | TATATCAACTCTTTT TTTATAG TTT CTATTAA TTTTTTTTCTACTAT CLK_1792 2610863 - 2609901 - | DHH family protein TERM 3587 2610258 - 2610283 + g 81 -6.3 -5.09685 | TCCATAAAGCTTTAA TCTTTGAAATT TTTT ATTTTCAAAGA TTTTTCTATGTATTG TERM 3588 2610832 - 2610802 - G 100 -14.2 -2.87243 | opp_overlap 2610803, overlap 2610808 CCATCAGGAGAAGTA TGGAAAGTAATAGC TAT GCTATTACTTTCCT TTATTTTATCTAGTA TERM 3589 2610803 - 2610831 + g 100 -17.7 -4.84146 | opp_overlap 2610802 2610808 CATCAGGAGAAGTAT GGAAAGTAATAGC TAT GCTATTACTTTCC TTTATTTTATCTAGT TERM 3590 2610826 - 2610808 - G 89 -10.4 -3.72984 | opp_overlap 2610803, overlap 2610802 GGAGAAGTATGGAAA GTAATAGC TAT GCTATTAC TTTCCTTTATTTTAT rbfA 2611215 - 2610853 - | ribosome-binding factor A infB 2613311 - 2611245 - | translation initiation factor IF-2 CLK_1795 2613643 - 2613329 - | ribosomal protein L7Ae family protein CLK_1796 2613905 - 2613633 - | hypothetical protein nusA 2615338 - 2613965 - | N utilization substance protein A TERM 3591 2614138 - 2614153 + g 76 -6.2 -4.52747 | CTTCTTGATTATCGT GAGATA CACT TATCTC TTCTTTTATATTTTC CLK_1798 2615816 - 2615355 - | hypothetical protein TERM 3592 2615903 - 2615918 + r 76 -4.6 -5.42259 | opp_overlap 2615903 ATATTAATGTAAAAA CGCAAC TTAC GCTGCG TTTTTTTACAAATAG TERM 3593 2615918 - 2615903 - R 78 -6.8 -4.76892 | opp_overlap 2615903 ATATTAATGTAAAAA CGCAAC TTAC GCTGCG TTTTTTTACAAATAG TERM 3594 2615956 - 2615937 - R 100 -10 -4.40003 | opp_overlap 2615933 2615937 2615939 TTTTACAAATAGAAA GAGCGGGT TCAT ACCCACTC TGTGCTTTAACATAT polC 2620419 - 2616121 - | DNA polymerase III, alpha subunit gcpE 2621747 - 2620698 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 3595 2621896 - 2621910 + r 73 -7.2 -4.08546 | overlap 2621891 TATTAAAATTTTATA GGATAT AAT ATATCC TTTATGGTTACTAAT CLK_1801 2622893 - 2621883 - | putative membrane-associated zinc metalloprotease TERM 3596 2622879 - 2622867 - G 72 -7.7 -3.67918 | overlap 2622860 AACTAATATGCCAAA GGCTA AAA TAGCC GCTACTATATACATT dxr 2624095 - 2622938 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 3597 2623369 - 2623384 + g 70 -4 -4.91977 | gap 1, overlap 2623367 AATGGACTATACTTT GTGGATG CAC CA-CCAC TTTTATATTTTCATA CLK_1803 2625105 - 2624125 - | hypothetical protein TERM 3598 2625056 - 2625046 - G 86 -2.6 -6.11243 | opp_overlap 2625046 AGCTAATAAAAAAAA TATT ATG AATA TTATTATAGCATAAA CLK_1804 2625396 - 2625205 - | hypothetical protein CLK_1805 2625608 - 2625465 - | hypothetical protein TERM 3599 2625694 - 2625748 + r 95 -10 -4.22338 | gap 1, opp_overlap 2625676 2625708, overlap 2625708 TCTATAATAAGTTCT TATAAAGTAAAAAACTCAATCTA AGAATAAATA TAGATTGAGTTTTTTA-TTTATA TTTTAAAGTTGTAAT TERM 3600 2625735 - 2625708 - R 76 -4.3 -5.42514 | opp_overlap 2625708 2625694 TTATAAAGTAAAAAA CTCAATCTA AGAATAAATA TAGATTGAG TTTTTTATTTATATT TERM 3601 2625708 - 2625735 + r 82 -4.3 -5.7827 | opp_overlap 2625708, overlap 2625694 TTATAAAGTAAAAAA CTCAATCTA AGAATAAATA TAGATTGAG TTTTTTATTTATATT cdsA 2626548 - 2625751 - | phosphatidate cytidylyltransferase TERM 3602 2626030 - 2626051 + g 73 -5.9 -4.62872 | overlap 2626032 2626049 GGCTCCTATTATTCC GCCTATAGA ACCT TCTATAGTC TTTTTAGGACTTACT TERM 3603 2626032 - 2626049 + g 74 -7.1 -3.92577 | overlap 2626030 CTCCTATTATTCCGC CTATAGA ACCT TCTATAG TCTTTTTAGGACTTA TERM 3604 2626218 - 2626207 - G 78 -3 -5.50313 | TATAAAACTAAAAAA TATG GGAA CATA TAAAAATCCTAAAAG uppS 2627331 - 2626573 - | undecaprenyl diphosphate synthase TERM 3605 2627373 - 2627388 + r 79 -9 -3.59627 | opp_overlap 2627373 TAAATTATTAAAAAA CCTGCT AATA AGCAGG TTATAATGTTTATAT TERM 3606 2627388 - 2627373 - R 100 -9 -5.243 | opp_overlap 2627373 TAAATTATTAAAAAA CCTGCT AATA AGCAGG TTATAATGTTTATAT frr 2627952 - 2627398 - | ribosome recycling factor pyrH 2628684 - 2627968 - | uridylate kinase CLK_1810 2628871 - 2628993 + | hypothetical protein TERM 3607 2629050 - 2629032 - T 100 -11.8 -5.41143 | opp_overlap 2629032 TATTTTTCAAAAAAA GAGAACAC TCA GTGTTCTC TTTTTTAATTATTTG TERM 3608 2629032 - 2629050 + T 100 -11.8 -5.4148 | opp_overlap 2629032 TATTTTTCAAAAAAA GAGAACAC TCA GTGTTCTC TTTTTTAATTATTTG tsf 2629982 - 2629059 - | translation elongation factor Ts TERM 3609 2629739 - 2629722 - G 75 -7.1 -4.08948 | opp_overlap 2629721 2629722, overlap 2629737 TAACTCTACAAATAA TTCGTTT ACTG AAACGAA ATCTGTTTCACAGTT TERM 3610 2630042 - 2630015 - R 75 -7.1 -4.32201 | opp_overlap 2630010 TTAACTAATTTAAAA GGTAAATGAGA GATTAG TCTCACCTACC TTATATTTTTCATTT rpsB 2630771 - 2630070 - | ribosomal protein S2 TERM 3611 2630981 - 2631010 + r 70 -5.1 -4.84673 | opp_overlap 2630984, overlap 2630983 2630984 2630988 CATAATTGTACTAAA AAATAAAGAAGTC CTAA GACTTCTTTACTA TTTTATCTTCTTTAA TERM 3612 2630983 - 2631008 + r 77 -7.7 -4.01819 | opp_overlap 2630984, overlap 2630981 2630984 2630988 TAATTGTACTAAAAA ATAAAGAAGTC CTAA GACTTCTTTAC TATTTTATCTTCTTT TERM 3613 2631007 - 2630984 - R 100 -11.2 -5.16237 | opp_overlap 2630983 2630981 2630984 2630988 AATTGTACTAAAAAA TAAAGAAGTC CTAA GACTTCTTTA CTATTTTATCTTCTT TERM 3614 2630984 - 2631007 + r 87 -11.2 -2.98651 | opp_overlap 2630984, overlap 2630983 2630981 2630988 AATTGTACTAAAAAA TAAAGAAGTC CTAA GACTTCTTTA CTATTTTATCTTCTT TERM 3615 2630988 - 2631003 + r 77 -7.6 -4.11862 | opp_overlap 2630984, overlap 2630984 2630983 2630981 GTACTAAAAAATAAA GAAGTC CTAA GACTTC TTTACTATTTTATCT codY 2631784 - 2631008 - | GTP-sensing transcriptional pleiotropic repressor CodY topA 2634093 - 2631991 - | DNA topoisomerase I dprA 2635550 - 2634465 - | DNA protecting protein DprA TERM 3616 2635649 - 2635630 - H 80 -3 -6.10295 | GCAATATAAAAAAAA TAAATATT TGGA AATACTTA TATATTTAAATAAAT TERM 3617 2635985 - 2635975 - g 91 -5.4 -5.71712 | opp_overlap 2635975 GCTGATATAAAAAAA GAAG GTT CTTC GTTTGATTTACCCAT TERM 3618 2636328 - 2636314 - g 73 -5.8 -4.67942 | CCTAATAAAGTAAAA GAAAAA GAT TTTTTC GAAATAACTGGTCAA CLK_1816 2635750 - 2637273 + | Mg chelatase-like protein CLK_1817 2637289 - 2637660 + | hypothetical protein TERM 3619 2637690 - 2637656 - T 95 -11.8 -3.55203 | opp_overlap 2637658 2637665, overlap 2637665 AAAATGCTTTTCAAA TATAAAAAATACACCT AAT AAGTGTATTCTTTATA TTGGGGCTGTTAAAA TERM 3620 2637681 - 2637665 - T 85 -5.9 -5.56264 | opp_overlap 2637665 2637658, overlap 2637656 TTCAAATATAAAAAA TACACCT AAT AAGTGTA TTCTTTATATTGGGG TERM 3621 2637791 - 2637822 + T 100 -17.5 -3.62522 | opp_overlap 2637784 TAAACAGAGTTCTTG GCTTTAGAGGGAG TTTTTT CTCCCTCTAAAGC TTATTAACAGAATTC TERM 3622 2637827 - 2637866 + T 73 -8.8 -2.90615 | gap 1, opp_overlap 2637784 2637835, overlap 2637831 2637832 2637834 CCCTCTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 3623 2637832 - 2637862 + T 79 -9.8 -2.75769 | opp_overlap 2637835, overlap 2637831 2637827 2637834 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 3624 2637859 - 2637835 - T 90 -10.1 -3.71552 | opp_overlap 2637834 2637832 2637831 2637827 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG rnhB 2638836 - 2638027 - | ribonuclease HII TERM 3625 2638541 - 2638521 - G 76 -6.9 -4.36595 | CATTTAAATCTAAAA CTACTGCAG CGG CTACAATAG GTCCTGCTAAAGGCC TERM 3626 2639020 - 2639043 + r 72 -8.3 -3.14528 | opp_overlap 2639022 ATGTTTATAGGTATA TACTAAAGC AGTCTA GCTTTAGTA TATTAACATTTCTAT TERM 3627 2639071 - 2639093 + r 85 -10 -3.27164 | opp_overlap 2639071 2639070 2639069 TATACTTATAAAATT GGATACATTG CTC TAATGTATCC TTCAATTATATAATA TERM 3628 2639093 - 2639071 - R 75 -9.3 -2.55459 | opp_overlap 2639071, overlap 2639070 2639069 TATACTTATAAAATT GGATACATT GCTCT AATGTATCC TTCAATTATATAATA CLK_1819 2640011 - 2639133 - | GTP-binding protein TERM 3629 2639573 - 2639593 + g 72 -4.7 -4.99043 | GCCTATCTCCTACTT TGGCTATAG AGT TTTTAGCCA TTTTATTTATAAAAG lepB 2640840 - 2640316 - | signal peptidase I TERM 3630 2640798 - 2640785 - G 77 -4.5 -5.32944 | opp_overlap 2640785 GTTATAATTAAAAAA GCTGC TATC ACAGC TACTATTATAGATTT TERM 3631 2640888 - 2640869 - R 82 -5.7 -5.58454 | opp_overlap 2640869 2640860, overlap 2640849 CTTATATGAAAAAAA GGGACTT ATGCTA AAGCCCC TTATGTTTCATTATA rplS 2641243 - 2640899 - | ribosomal protein L19 TERM 3632 2641367 - 2641388 + r 76 -6.1 -4.85177 | opp_overlap 2641367 2641369 AAAATTTTTATTCAA TATTTTTTA CAAC TAAAAAATA TTTTTCCTATAGTTT TERM 3633 2641406 - 2641423 + r 86 -4.3 -5.86465 | overlap 2641403 TTTCCTATAGTTTTT TATTAAA ATCT TTTAATA TTTTTTTATCTTCTT trmD 2642117 - 2641395 - | tRNA (guanine-N1)-methyltransferase rimM 2642602 - 2642108 - | 16S rRNA processing protein RimM TERM 3634 2642341 - 2642328 - G 74 -6.7 -4.30995 | opp_overlap 2642327 2642328, overlap 2642325 TCTGCTATAAAATAA CTTCC CTTT GGAAG CTTTACAGAATTTTC TERM 3635 2642693 - 2642712 + r 91 -10.8 -3.49938 | opp_overlap 2642693, overlap 2642686 ATTATATATAAAAAA GAGTTAGG TGCA CCTAACTC TTCTAAATTATTTCA TERM 3636 2642712 - 2642693 - R 100 -10.8 -5.43414 | opp_overlap 2642686 2642693 ATTATATATAAAAAA GAGTTAGG TGCA CCTAACTC TTCTAAATTATTTCA CLK_1824 2642942 - 2642715 - | hypothetical protein rpsP 2643211 - 2642963 - | ribosomal protein S16 TERM 3637 2643014 - 2643026 + g 74 -3.4 -5.35222 | TTTAACTGTATCAGT TGGT TGCGC ACCA TTTTTTATCCATTTT TERM 3638 2643260 - 2643248 - R 70 -6.3 -4.19817 | TCTATTTATTTAAAA TGGTA ATT TACCA AATAAACCTTTTTTA ffh 2644591 - 2643242 - | signal recognition particle protein CLK_1827 2644936 - 2644604 - | DNA-binding protein TERM 3639 2645054 - 2645029 - R 100 -11.3 -4.98616 | opp_overlap 2645027 TCAAAATATTAAAAA GCTGTCAAGTA TTTT TACTTAACAGC CATAATGTTTTTTGT ftsY 2646071 - 2645160 - | signal recognition particle-docking protein FtsY TERM 3640 2646109 - 2646167 + r 93 -13.3 -2.91383 | gap 1, opp_overlap 2646158, overlap 2646127 TATTATTTTATCCGA TGACTACCCGCTCTAATGCTCCCGCCTT CTTA AAAGTGGGAGTATTAGAGCGGCT-GCCG TCTCTGCATAACCAT smc 2649815 - 2646234 - | chromosome segregation protein SMC TERM 3641 2647294 - 2647304 + g 88 -4 -5.67063 | opp_overlap 2647285, overlap 2647285 ATATTAGTATCCATA GAAT ACA ATTC TTTTTTTATACTAAC TERM 3642 2649463 - 2649486 + g 76 -9.8 -2.72829 | overlap 2649462 TCTTTAAGTCTACAT TGAGTATTAT TTAT ATAATACTCA CTTTCACCAGATCTA TERM 3643 2650050 - 2649999 - R 75 -7.7 -3.86106 | gap 1, opp_overlap 2650000 2650005 2650041, overlap 2649991 2650000 2650005 2650009 ATATCAATTAGTAAA CTAAAATATA-TATCCCCACCG AATATGAAA CAGTGGGGATACTATATTTTAT ATTAACTTGATAATT TERM 3644 2650049 - 2650000 - R 85 -11.2 -2.90941 | gap 1, opp_overlap 2650000 2650005 2650041, overlap 2649991 2649999 2650005 2650009 TATCAATTAGTAAAC TAAAATATA-TATCCCCACCG AATATGAAA CAGTGGGGATACTATATTTTA TATTAACTTGATAAT TERM 3645 2650000 - 2650049 + r 75 -9 -3.16944 | gap 1, opp_overlap 2649991 2649999 2650000 2650005 2650009, overlap 2650005 2650041 TATCAATTAGTAAAC TAAAATATA-TATCCCCACCG AATATGAAA CAGTGGGGATACTATATTTTA TATTAACTTGATAAT TERM 3646 2650044 - 2650005 - R 77 -6.7 -4.59376 | gap 1, opp_overlap 2650005 2650000 2650041, overlap 2650000 2649999 2650009 ATTAGTAAACTAAAA TATA-TATCCCCACCG AATATGAAA CAGTGGGGATACTATA TTTTATATTAACTTG TERM 3647 2650039 - 2650009 - R 79 -9.1 -3.51998 | opp_overlap 2650005 2650000, overlap 2650005 2650000 2649999 GTAAACTAAAATATA TATCCCCACCG AATATGAAA CAGTGGGGATA CTATATTTTATATTA CLK_1830 2651165 - 2650074 - | radical SAM domain-containing protein TERM 3648 2650125 - 2650136 + g 74 -3 -5.46698 | TGCCATATACTCTTT CATA AATA TATG TTTTTTAATTTTACC TERM 3649 2651113 - 2651102 - G 75 -4.4 -5.24129 | GTTGGTTACAAAAAA CACA ATTA TGTG GACATCCTTCCTGAG rnc 2651862 - 2651158 - | ribonuclease III TERM 3650 2651876 - 2651928 + r 70 -3.7 -5.15682 | opp_overlap 2651881, overlap 2651878 2651881 AAAATTTTCACTCCC TAGAAGTTCATTCTTCAGTATATTT ATT AAATAAACTCAAGAATAAACTTATC TTTTATTTATATTTT TERM 3651 2651923 - 2651881 - R 87 -10.2 -3.30124 | opp_overlap 2651881 2651878 2651876 TTTCACTCCCTAGAA GTTCATTCTTCAGTATATTT ATT AAATAAACTCAAGAATAAAC TTATCTTTTATTTAT TERM 3652 2651881 - 2651923 + r 77 -8 -4.14927 | opp_overlap 2651881, overlap 2651878 2651876 TTTCACTCCCTAGAA GTTCATTCTTCAGTATATTT ATT AAATAAACTCAAGAATAAAC TTATCTTTTATTTAT TERM 3653 2651977 - 2651956 - R 89 -8.7 -4.66537 | TTTTTTAATATAAAA TCCCCGC TAATAAAG GCGGGGA TAAAAATCAATTATT acpP 2652221 - 2651988 - | acyl carrier protein TERM 3654 2652190 - 2652200 + g 82 -5.4 -5.42198 | overlap 2652188 ATACTTAATTGTTCT GCTA TTG TAGC TTTTATTTTTTCAAA plsX 2653306 - 2652299 - | fatty acid/phospholipid synthesis protein PlsX TERM 3655 2652913 - 2652900 - G 85 -8.1 -4.4891 | TCTACTATCATAAAA GGAGC TTTA GCTCC TGGAAGTAATGGCGC TERM 3656 2653385 - 2653368 - R 83 -4.1 -5.95946 | TTAACAAGAAAAAAA GAAAGCC TTAC GACTTCC TTTTTTATAATTATT CLK_1834 2653578 - 2653396 - | ribosomal protein L32 family protein CLK_1835 2654092 - 2653592 - | ribosomal protein L32 family protein ackA 2655403 - 2654210 - | acetate kinase TERM 3657 2654803 - 2654815 + g 70 -6.3 -4.16279 | AAGTTATTACTTTAA GATCT TTA AGATC TTTTCCCATCATATC pta 2656541 - 2655543 - | phosphate acetyltransferase TERM 3658 2655859 - 2655872 + g 72 -6.7 -4.0942 | overlap 2655850 TCTTTTGCTATTTTT GTAGC TTCT GCTAC TTTATCTACTAAATC TERM 3659 2656816 - 2656791 - R 100 -11.3 -5.82388 | opp_overlap 2656791 2656789 AAACTTGAAAAAAAA CCAGGTAAAAT TTAA ATTTCACCTGG TCTTTAGCATTCAAT TERM 3660 2656791 - 2656816 + r 77 -9.1 -3.4149 | opp_overlap 2656791, overlap 2656789 AAACTTGAAAAAAAA CCAGGTAAAAT TTAA ATTTCACCTGG TCTTTAGCATTCAAT CLK_1838 2657754 - 2656876 - | hypothetical protein TERM 3661 2656951 - 2656967 + g 73 -8.1 -3.48738 | opp_overlap 2656951 2656950 2656953, overlap 2656950 AATTATAACAACAAT TACTAAC CAT GTTAGTA TATTTAATGGTAATG CLK_1839 2658099 - 2657977 - | hypothetical protein TERM 3662 2658109 - 2658084 - G 100 -14.9 -4.07568 | opp_overlap 2658072 2658084 CTTGTTCTTTTAAAA GAGCTCTACTT AGCA AAGTAGAGCTC TTTTTTAATTATTAA TERM 3663 2658084 - 2658109 + g 100 -14.9 -5.37865 | opp_overlap 2658084, overlap 2658072 CTTGTTCTTTTAAAA GAGCTCTACTT AGCA AAGTAGAGCTC TTTTTTAATTATTAA CLK_1840 2658840 - 2658121 - | putative D-proline reductase, PrdB subunit CLK_1842 2659145 - 2658870 - | hypothetical protein prdA 2661268 - 2659154 - | D-proline reductase, PrdA proprotein TERM 3664 2660410 - 2660423 + g 72 -5.3 -4.76963 | GGTCTACATTGAATG CATCT TCAC AGATG TTTTCTCTTATATAA CLK_1844 2661471 - 2661301 - | hypothetical protein TERM 3665 2661488 - 2661504 + r 73 -8 -3.81307 | overlap 2661486 ACTGCAGCCGCTTGG CCTGGT CATTC ACCAGG TGTTTTACATTTTCC CLK_1845 2662611 - 2661493 - | putative electron transport protein TERM 3666 2661534 - 2661546 + g 76 -7.7 -3.89448 | CTGGTCCATTTCCTT TACCC TTT GGGTA TTCTATGTTTTTGCA TERM 3667 2663243 - 2663208 - R 100 -10 -5.95539 | opp_overlap 2663211 2663214, overlap 2663211 CTCTAAATAAAAAAA TAAGAGTTTATACTAA AATT TTAGTACAAACTCTAA ATTCCAATTACAAAA TERM 3668 2663211 - 2663240 + r 75 -9.5 -2.55074 | opp_overlap 2663208 2663211, overlap 2663214 TAAATAAAAAAATAA GAGTTTATACTAA AATT TTAGTACAAACTC TAAATTCCAATTACA TERM 3669 2663240 - 2663211 - R 100 -11.7 -5.01858 | opp_overlap 2663211 2663214, overlap 2663208 TAAATAAAAAAATAA GAGTTTATACTAA AATT TTAGTACAAACTC TAAATTCCAATTACA CLK_1846 2664271 - 2663372 - | hypothetical protein TERM 3670 2663855 - 2663845 - G 76 -6.8 -4.50661 | AAGCTACAACTAAAA GGGA TAC TCCC ATACAAAATTGTACT TERM 3671 2664231 - 2664215 - G 74 -2.3 -5.61881 | overlap 2664222 CTTTAAAAAGAAAAA TAAAAAG TAG CTTGTTA AAACTAATAATACTG CLK_1847 2664405 - 2664280 - | hypothetical protein TERM 3672 2664323 - 2664339 + g 74 -2.3 -5.65177 | AATTTTAAGTAAACC TTTTCAT TGA ATGTAAA TTTTTTTATAAATAT TERM 3673 2664548 - 2664516 - R 84 -5.1 -5.64873 | opp_overlap 2664516 TTTAATAACAAAAAA GCTTATAATCT ATTATTTTGTA AGATTATAAGC TTTCTACATAAATTA TERM 3674 2664565 - 2664590 + r 86 -9.3 -4.13077 | opp_overlap 2664564 2664561, overlap 2664553 TTCTACATAAATTAC TTTAAATTATC CTAG GATAATTTAAA TTTATCTACTGTATT CLK_1848 2666594 - 2664576 - | methyl-accepting chemotaxis protein TERM 3675 2666051 - 2666065 + g 70 -5 -4.65584 | opp_overlap 2666051, overlap 2666052 GATTTACAGCAGATA TCATAG CTC CTATGG TTTTCTCTGATTTAT TERM 3676 2666339 - 2666353 + g 84 -8.6 -4.3341 | overlap 2666344 CATTAAAATTATCTA CAGATG AAA CATCTG TTTCTATTAATTTTG TERM 3677 2666465 - 2666487 + g 83 -2.1 -5.86332 | CTTCCTCCAATTTAT TATTGATAA GTTCA TTTTCAATA TTTTTTTTAAATTCA CLK_1849 2666776 - 2666657 - | hypothetical protein TERM 3678 2666913 - 2666939 + r 82 -9.6 -3.30635 | opp_overlap 2666905 2666915, overlap 2666900 2666915 TATAAAATTATTTAG AAGATGTAACTT ATA AAGTTACATCTA TTATAAAAAAATTTA TERM 3679 2666937 - 2666915 - R 95 -12.2 -3.42124 | opp_overlap 2666913 2666900 2666915, overlap 2666905 TAAAATTATTTAGAA GATGTAACTT ATA AAGTTACATC TATTATAAAAAAATT TERM 3680 2666915 - 2666937 + r 93 -12.2 -3.21772 | opp_overlap 2666915 2666905, overlap 2666913 2666900 TAAAATTATTTAGAA GATGTAACTT ATA AAGTTACATC TATTATAAAAAAATT CLK_1850 2667069 - 2666956 - | hypothetical protein TERM 3681 2667044 - 2667060 + g 76 -9.5 -3.06492 | TCAACTCCCCCCCCT TTCAAGC ACT GCTTGAA TATTGGCATCAGTGG TERM 3682 2667498 - 2667477 - R 100 -8.1 -5.55769 | opp_overlap 2667477, overlap 2667482 CTGTACAATAAAAAA GAGAATCTT TAAA AAGATCCTC TTTTTTAAGAAAATT TERM 3683 2667477 - 2667498 + r 78 -5.9 -5.01732 | opp_overlap 2667477 2667482 CTGTACAATAAAAAA GAGAATCTT TAAA AAGATCCTC TTTTTTAAGAAAATT TERM 3684 2667508 - 2667482 - R 80 -8.2 -4.27001 | opp_overlap 2667477 2667501, overlap 2667477 CAATAAAAAAGAGAA TCTTTAAAAAGA TCC TCTTTTTTAAGA AAATTTATGAAATTT CLK_1851 2668634 - 2667549 - | hypothetical protein CLK_1852 2669778 - 2668702 - | hypothetical protein TERM 3685 2670058 - 2670086 + H 74 -8.4 -3.29947 | opp_overlap 2670062, overlap 2670062 TAAGCTTTTCTTTAT TAAATATGCTAT ATTTC ATGGCATATTTA TTAGTATAATAAATA TERM 3686 2670347 - 2670331 - g 71 -2.3 -5.40004 | overlap 2670346 TATTAAATGAAAAAA TCCTTAA CAT TCAAAGA CATGGTTTTAATGAC TERM 3687 2670775 - 2670794 + G 88 -8.6 -4.37199 | GTTATAGGTGGACTC GTAGGAAG TGTA CTTCCTGC TTTATTAATTATAAT TERM 3688 2671272 - 2671257 - g 71 -4.7 -4.84363 | opp_overlap 2671257 TGAAACTAGTAAAAA TGGTG TTTTAC CACCA TTCTTAACAAAAACA CLK_1853 2670322 - 2671767 + | amino acid permease family protein TERM 3689 2671781 - 2671811 + T 100 -8.5 -5.59655 | opp_overlap 2671781 AAATGAATTAAAAAA TCTATCTGATTAT AAATA AAAATCAGATAGA TTTTTTATTAATTTA TERM 3690 2671811 - 2671781 - T 100 -8.5 -5.33921 | opp_overlap 2671781 AAATGAATTAAAAAA TCTATCTGATTAT AAATA AAAATCAGATAGA TTTTTTATTAATTTA TERM 3691 2671863 - 2671886 + T 95 -12.6 -3.45634 | opp_overlap 2671863, overlap 2671858 AACTTTCTAAACAAA GGATTATGCA ATAA TGCATAATCC TTAAATTTTGTTACA TERM 3692 2671886 - 2671863 - T 100 -12.6 -4.42464 | opp_overlap 2671863 2671858 AACTTTCTAAACAAA GGATTATGCA ATAA TGCATAATCC TTAAATTTTGTTACA CLK_1854 2672789 - 2671902 - | hypothetical protein TERM 3693 2672665 - 2672677 + g 72 -6.3 -4.28115 | AAACCTACTGCACCA GCTTT CCA AAAGC TTATTTCTTCTAAAT TERM 3694 2673162 - 2673130 - R 91 -7 -5.52986 | ATTTTATTAAAAAAA GATGGACTCCACGC AATAA ACATTGAGCCCATC TTTAAGTAATCATTG CLK_1855 2674319 - 2673312 - | proline racemase TERM 3695 2673540 - 2673528 - G 76 -7.7 -3.9093 | opp_overlap 2673528 2673527 TTGAGCATATAATAA TGCCA TTT TGGCA CTTGTACCAGTTCCA prdE 2674803 - 2674333 - | PrdE protein TERM 3696 2674387 - 2674369 - G 76 -6.1 -4.66833 | opp_overlap 2674346 2674369 TTTTAATTTTAAAAA TGCTAAA GCTTT TTTAGCA TCTATTGGCATAACA prdD 2675593 - 2674817 - | PrdD protein TERM 3697 2675870 - 2675909 + r 100 -13.2 -5.95286 | gap 1, opp_overlap 2675870 TTTTATTAAAGGAAA TGCAATAATG-AGTTCAGT AAA ACTGCACTACATTATTGCA TTTTTTATTTTTAAT TERM 3698 2675909 - 2675870 - R 100 -13.2 -4.10552 | gap 1, opp_overlap 2675870 TTTTATTAAAGGAAA TGCAATAATG-AGTTCAGT AAA ACTGCACTACATTATTGCA TTTTTTATTTTTAAT prdB 2676659 - 2675934 - | D-proline reductase, PrdB subunit TERM 3699 2676542 - 2676559 + g 76 -9.9 -2.87259 | opp_overlap 2676533, overlap 2676540 2676547 2676549 AGTGAACTCCTGCTG CAGTAGC TATG GCTACTG TCATATCTTTTAGTT CLK_1860 2677010 - 2676735 - | hypothetical protein CLK_1861 2679130 - 2677019 - | putative D-proline reductase, PrdA proprotein CLK_1862 2679328 - 2679152 - | hypothetical protein TERM 3700 2679345 - 2679361 + r 73 -8 -3.81307 | overlap 2679343 ACTGCAGCCGCTTGG CCTGGT CATTC ACCAGG TGTTTTGCATTTTCC CLK_1863 2680468 - 2679350 - | putative electron transport protein TERM 3701 2680424 - 2680437 + g 72 -6.7 -4.08064 | ACAAGATACATCTGG TGCAC CTAC GTGCA TTTTAAGGGAGAATT TERM 3702 2680861 - 2680917 + r 100 -17.9 -3.40022 | opp_overlap 2680861 2680867, overlap 2680867 AAATTATATATAACA GTAAAAGTTTATAAAAAGTTTTCTACA TAA TGTAATAAGCTTTTTATAAACTTTTAC TATATTTATCCTTTA TERM 3703 2680917 - 2680861 - R 100 -17.9 -3.4033 | opp_overlap 2680861 2680867, overlap 2680867 AAATTATATATAACA GTAAAAGTTTATAAAAAGTTTTCTACA TAA TGTAATAAGCTTTTTATAAACTTTTAC TATATTTATCCTTTA TERM 3704 2680867 - 2680911 + r 100 -11.1 -4.47397 | opp_overlap 2680861 2680867, overlap 2680861 TATATAACAGTAAAA GTTTATAAAAAGTTTTCTACA TAA TGTAATAAGCTTTTTATAAAC TTTTACTATATTTAT TERM 3705 2680911 - 2680867 - R 100 -11.1 -4.48263 | opp_overlap 2680867 2680861, overlap 2680861 TATATAACAGTAAAA GTTTATAAAAAGTTTTCTACA TAA TGTAATAAGCTTTTTATAAAC TTTTACTATATTTAT TERM 3706 2681038 - 2681089 + r 90 -11.2 -3.21914 | opp_overlap 2681039, overlap 2681043 ATTTCTAATATAAAA ATAAACAGGGAAATTCAATGATAT TTTT GTATCATTAAAATTCCCTGTTTAA TATAATTTTATTTAA TERM 3707 2681088 - 2681039 - R 100 -16.2 -5.0916 | opp_overlap 2681038 2681043 TTTCTAATATAAAAA TAAACAGGGAAATTCAATGATA TTTTTG TATCATTAAAATTCCCTGTTTA ATATAATTTTATTTA TERM 3708 2681043 - 2681084 + r 100 -11.1 -3.92694 | opp_overlap 2681039, overlap 2681038 TAATATAAAAATAAA CAGGGAAATTCAATGATAT TTTT GTATCATTAAAATTCCCTG TTTAATATAATTTTA CLK_1864 2681771 - 2681109 - | hypothetical protein CLK_1865 2683115 - 2681811 - | putative electron transport protein CLK_1866 2683114 - 2683230 + | hypothetical protein TERM 3709 2683245 - 2683223 - TR 75 -9.4 -2.69977 | overlap 2683220 2683225 2683237 2683238 ATAGGGTATATATTA TACTATAAAT AAA ATTTATAGTA GCTATAAGCATTATA TERM 3710 2683400 - 2683419 + Tr 84 -9.4 -3.75153 | opp_overlap 2683400, overlap 2683404 TTTATAATAAAAAAA TAAAGGCA TTTC TGCCTTTA TTTAGATTGAAGACA TERM 3711 2683419 - 2683400 - TR 100 -9.4 -5.88565 | opp_overlap 2683400 2683404 TTTATAATAAAAAAA TAAAGGCA TTTC TGCCTTTA TTTAGATTGAAGACA TERM 3712 2683679 - 2683653 - TR 70 -5.9 -4.27443 | overlap 2683664 TTAGCATGAAAATAA GCTGTAGACTA TCCGG TTGTCTACAAC CTGAAAGAATGAAGC TERM 3713 2683681 - 2683718 + Tr 75 -8.7 -3.27572 | opp_overlap 2683664 2683686 2683689, overlap 2683680 2683686 CGGTTGTCTACAACC TGAAAGAATGAAGCA AAATCTAG TGCTTCATTCTTTAA ATTTATTATATATTT TERM 3714 2683686 - 2683713 + Tr 78 -8.6 -3.94868 | opp_overlap 2683686 2683689, overlap 2683681 2683680 GTCTACAACCTGAAA GAATGAAGCA AAATCTAG TGCTTCATTC TTTAAATTTATTATA TERM 3715 2683713 - 2683686 - TR 76 -8.6 -3.69354 | opp_overlap 2683686 2683681 2683680, overlap 2683689 GTCTACAACCTGAAA GAATGAAGCA AAATCTAG TGCTTCATTC TTTAAATTTATTATA CLK_1867 2684235 - 2683708 - | hypothetical protein CLK_1868 2684719 - 2684240 - | hypothetical protein TERM 3716 2684312 - 2684296 - G 71 -2.3 -5.42458 | overlap 2684299 AATAAAAAAAATAAA CTATATT TCT AATAAAG GTTGCCTTTTTACCT TERM 3717 2684877 - 2684843 - R 100 -13.2 -4.8048 | opp_overlap 2684849, overlap 2684824 2684823 2684845 TTTTTATAGTAAAAA CATAAATCCATCTATA TGA TATAGATGGATTTATC AGATTGAAAACAAAA TERM 3718 2684875 - 2684845 - R 100 -15.8 -4.02302 | opp_overlap 2684849, overlap 2684824 2684823 2684843 TTTATAGTAAAAACA TAAATCCATCTATA TGA TATAGATGGATTTA TCAGATTGAAAACAA TERM 3719 2684849 - 2684871 + r 100 -12.2 -3.92522 | opp_overlap 2684845 2684843 TAGTAAAAACATAAA TCCATCTATA TGA TATAGATGGA TTTATCAGATTGAAA TERM 3720 2684888 - 2684928 + r 91 -12.9 -2.75982 | opp_overlap 2684888 2684893, overlap 2684893 TTATCAGATTGAAAA CAAAAGGCTTATGAGAAGT TAA ATTTTTCATAAGCCTTTTA ATATTTCTAATATAT TERM 3721 2684928 - 2684888 - R 95 -10.7 -4.24948 | opp_overlap 2684888 2684893, overlap 2684893 TTATCAGATTGAAAA CAAAAGGCTTATGAGAAGT TAA ATTTTTCATAAGCCTTTTA ATATTTCTAATATAT TERM 3722 2684923 - 2684893 - R 95 -8.4 -5.11836 | opp_overlap 2684893 2684888, overlap 2684888 AGATTGAAAACAAAA GGCTTATGAGAAGT TAA ATTTTTCATAAGCC TTTTAATATTTCTAA TERM 3723 2684893 - 2684923 + r 100 -12.8 -4.53036 | opp_overlap 2684888 2684893, overlap 2684888 AGATTGAAAACAAAA GGCTTATGAGAAGT TAA ATTTTTCATAAGCC TTTTAATATTTCTAA TERM 3724 2685157 - 2685131 - R 89 -9.5 -4.27443 | overlap 2685128 TTAGCATGAAAATAA GCTGTAGACTA TCTGG TTGTCTACAGC CTGAAACAAAGGCAT TERM 3725 2685164 - 2685183 + r 100 -7.9 -5.85011 | opp_overlap 2685164 GTCTACAGCCTGAAA CAAAGGC ATAAAA GCCTTTG TTTTTTTAATTTTTA TERM 3726 2685183 - 2685164 - R 72 -7.9 -3.59262 | opp_overlap 2685164 GTCTACAGCCTGAAA CAAAGGC ATAAAA GCCTTTG TTTTTTTAATTTTTA CLK_1869 2685624 - 2685196 - | PrdA domain-containing protein CLK_1870 2686966 - 2685656 - | putative electron transport protein TERM 3727 2687147 - 2687165 + r 77 -7.6 -4.01888 | TTTTTTAGATTTATA TTAAATCA TAC TGATTTAA TTTATAATATAAAGT CLK_1871 2688896 - 2687142 - | sensory box sigma-54 dependent transcriptional regulator TERM 3728 2687723 - 2687744 + g 93 -11.7 -3.10164 | opp_overlap 2687719 AAACCACACCATCCT GCAAAACTC TTAA GAGTTTTGC TTGCATACTAAGTGG TERM 3729 2688013 - 2688023 + g 76 -5.4 -5.1287 | AGAACACTAGCAGAG GTAG GCG CTAC TTTTTTAGCTATAGC TERM 3730 2689113 - 2689100 - H 72 -3.9 -5.32599 | TATAAAATATAAAAA GAAAA ATTT TTTTC ATAAAACAATTTATA CLK_1872 2689232 - 2690461 + | hypothetical protein TERM 3731 2691317 - 2691294 - g 100 -11.2 -5.00642 | opp_overlap 2691293 TAATGCAGATAAAAA CCTAATAGAA GGGT TTCTATTAGG CTTAGTAGAAATGAC CLK_1873 2690521 - 2691687 + | nucleoside recognition domain-containing protein CLK_1874 2692212 - 2691688 - | hypothetical protein TERM 3732 2691757 - 2691781 + g 76 -2.8 -5.5353 | opp_overlap 2691761, overlap 2691761 CTCTACACTTTCTTC TAAAGAAGCC GCAAA GGCTTCTAAA TTTTTTCTTAATATA TERM 3733 2691777 - 2691761 - G 71 -8 -3.53563 | opp_overlap 2691761 2691757 ACACTTTCTTCTAAA GAAGCC GCAAA GGCTTC TAAATTTTTTCTTAA coaD 2692719 - 2692225 - | pantetheine-phosphate adenylyltransferase CLK_1876 2693278 - 2692721 - | putative methyltransferase recG 2695579 - 2693540 - | ATP-dependent DNA helicase RecG TERM 3734 2695755 - 2695720 - R 100 -12.2 -4.02396 | opp_overlap 2695725, overlap 2695714 TAAATAAAATTTAAA TATAATAAAAAAAGCC CTTA GGCTTTTTTTATTCTA CAGACATTATAAAAT TERM 3735 2695725 - 2695750 + r 95 -12.1 -3.30338 | opp_overlap 2695720 2695714 AAAATTTAAATATAA TAAAAAAAGCC CTTA GGCTTTTTTTA TTCTACAGACATTAT CLK_1878 2697373 - 2695748 - | DAK2 domain-containing protein TERM 3736 2696168 - 2696180 + g 76 -3.5 -5.44119 | TATAGTTTTAGTAGG TATAA CCA TTATA TTTTTTTCGGATAGC TERM 3737 2697282 - 2697295 + g 90 -3.9 -6.17268 | GGGAAAACATTTAGA GAATT TACA AATTC TTTTTTTTCTTCTAA CLK_1879 2697738 - 2697388 - | hypothetical protein rpmB 2697938 - 2698129 + | ribosomal protein L28 TERM 3738 2698125 - 2698174 + T 86 -5.3 -5.75538 | opp_overlap 2698119 2698139, overlap 2698139 AGGTACAACGTGCTA TATAACACAAAAAATGCAGTTGT TTAA ACAATTGCATTTTTTATTCTATG TTTTTATTTTTTAAC TERM 3739 2698160 - 2698139 - T 85 -5.9 -5.53436 | opp_overlap 2698125 2698139 ATATAACACAAAAAA TGCAGTTGT TTAA ACAATTGCA TTTTTTATTCTATGT TERM 3740 2698139 - 2698160 + T 100 -8.1 -5.62045 | opp_overlap 2698139, overlap 2698125 ATATAACACAAAAAA TGCAGTTGT TTAA ACAATTGCA TTTTTTATTCTATGT CLK_1881 2698297 - 2698178 - | hypothetical protein TERM 3741 2698326 - 2698308 - R 78 -4.6 -5.48514 | ATCAATAAATAAAAA CTGTTATA AAA TTTAACAG CTGTATAATAAAATA CLK_1882 2698530 - 2698375 - | hypothetical protein TERM 3742 2698831 - 2698791 - R 77 -7.9 -4.10363 | ATAAAAATCTAGAAA TGAGAGTATCTTAAAAT AGATTTA ATTTTAAAACACCCTCA TTTTATCTTTGTATA CLK_1883 2699618 - 2698974 - | thiamine pyrophosphokinase TERM 3743 2699187 - 2699223 + g 85 -8.4 -4.40993 | TGACTTTCTAGGCTT TAATGAAATATCTTTA TTTGT TAAAAATATTTCATTA TTTTCATCCTTTATA TERM 3744 2699423 - 2699446 + g 85 -8.3 -4.41422 | TATCCATACATACTC CCTTTTCTT TAAAAT AAGAAAAGG TTCTTTTATCTATAG rpe 2700270 - 2699620 - | ribulose-phosphate 3-epimerase rsgA 2701142 - 2700264 - | ribosome small subunit-dependent GTPase A TERM 3745 2701021 - 2701062 + g 80 -9.6 -3.27565 | gap 1, opp_overlap 2701022 2701027, overlap 2701027 TCTACATAATCACCA ATCATAGGGGTAAGTTCAG TGTGC CTGAACTTACCCCT-TGCC TTACATTCTATAATT TERM 3746 2701061 - 2701022 - G 100 -13.1 -3.31931 | gap 1, opp_overlap 2701021 2701027, overlap 2701027 CTACATAATCACCAA TCATAGGGGTAAGTTCAG TGTGC CTGAACTTACCCCT-TGC CTTACATTCTATAAT TERM 3747 2701027 - 2701057 + g 100 -18.5 -3.21705 | opp_overlap 2701022 2701027, overlap 2701021 TAATCACCAATCATA GGGGTAAGTTCAG TGTGC CTGAACTTACCCC TTGCCTTACATTCTA TERM 3748 2701057 - 2701027 - G 100 -18.5 -2.95409 | opp_overlap 2701027 2701021, overlap 2701022 TAATCACCAATCATA GGGGTAAGTTCAG TGTGC CTGAACTTACCCC TTGCCTTACATTCTA CLK_1886 2703301 - 2701349 - | protein kinase CLK_1887 2704028 - 2703279 - | protein phosphatase family protein CLK_1888 2705075 - 2704047 - | radical SAM protein sun 2706415 - 2705087 - | ribosomal RNA small subunit methyltransferase B TERM 3749 2705723 - 2705741 + g 81 -2.5 -5.82281 | gap 1 CTGTACAGTAATATT CCCTTCTA TAAA TA-AAGGG TTTTTTTCTATGTTT TERM 3750 2705963 - 2705936 - G 71 -8.6 -2.85668 | opp_overlap 2705937 TATTTCTATACCATA TTGGCTTATAAA CATT TTTATAAGCCAT TTAGGATAGGAATAC TERM 3751 2705937 - 2705962 + g 95 -12.1 -3.60296 | opp_overlap 2705936 ATTTCTATACCATAT TGGCTTATAAA CATT TTTATAAGCCA TTTAGGATAGGAATA CLK_1890 2707152 - 2706436 - | putative neutral zinc metallopeptidase TERM 3752 2706748 - 2706766 + g 76 -6.8 -4.44667 | overlap 2706750 TTGGGAACTAATATT TACTATAG GAA CTATAGTG TTTCTTATTACAAGA TERM 3753 2706750 - 2706764 + g 71 -7.2 -3.82963 | overlap 2706748 GGGAACTAATATTTA CTATAG GAA CTATAG TGTTTCTTATTACAA fmt 2708246 - 2707305 - | methionyl-tRNA formyltransferase def 2708706 - 2708263 - | peptide deformylase priA 2710941 - 2708734 - | primosomal protein N' TERM 3754 2711220 - 2711181 - R 73 -8.8 -2.90615 | gap 1, opp_overlap 2711188 2711217, overlap 2711184 2711185 2711187 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGGG TERM 3755 2711215 - 2711185 - R 79 -9.8 -2.75769 | opp_overlap 2711188, overlap 2711184 2711181 2711187 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 3756 2711188 - 2711212 + r 90 -10.1 -3.71552 | opp_overlap 2711187 2711185 2711184 2711181 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 3757 2711256 - 2711225 - R 100 -16 -3.62522 | opp_overlap 2711217, overlap 2711244 GAATTCTGTTAATAA GCTTCAGAGGGAGT AAAA ACTTCCTCTGAAGC CAAGAACTCTGTTTA TERM 3758 2711286 - 2711313 + r 86 -4.2 -5.83211 | gap 1, opp_overlap 2711281 ATCCGCTAAATAAAA GAGGC-TTAACTT ATA AGGTTATTGCCTC TTTTTTATTTTCATA coaBC 2712516 - 2711329 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 3759 2711687 - 2711703 + g 76 -6.6 -4.46155 | TCTTTAGGTTTGTAA TCTGCA ACAGC TGCAGA TTTTATAACTATATG rpoZ 2712736 - 2712518 - | DNA-directed RNA polymerase, omega subunit gmk 2713346 - 2712717 - | guanylate kinase TERM 3760 2713222 - 2713263 + g 70 -3.7 -5.06103 | gap 1, overlap 2713210 2713222 2713225 TCCTCTCCCTTTCTT GG-AGATCTAGTGGTGGCAG AAA CTGATACCCATAGGTCTTCC TTTTTTAAAAGTTCT CLK_1897 2713621 - 2713346 - | hypothetical protein CLK_1898 2714515 - 2713637 - | hypothetical protein TERM 3761 2714671 - 2714692 + r 76 -6.1 -4.87807 | ATAACACTATATTTT TATAATTAT TAAA ATAATTATA TTTTTAGTATCTTAA ansA 2715710 - 2714709 - | L-asparaginase, type II TERM 3762 2715364 - 2715397 + g 82 -6.9 -4.98857 | gap 1, overlap 2715373 AGTTCAGAACTGCTT CTCATAGCTCCTGTAA CTA TTACAGGT-TTATGAG TTTTTATAGTTAAAT TERM 3763 2715373 - 2715389 + g 88 -9.5 -4.10363 | overlap 2715364 CTGCTTCTCATAGCT CCTGTAA CTA TTACAGG TTTATGAGTTTTTAT TERM 3764 2716303 - 2716331 + r 72 -7.5 -3.51708 | opp_overlap 2716303 2716305 GAGATTATAATTATA GATTTTACACAAC AAA GTAGAGTAAAATC TTCCTTTAGAACCTC spoIVA 2718118 - 2716637 - | stage IV sporulation protein A TERM 3765 2718568 - 2718595 + G 74 -8.6 -3.3353 | gap 1, overlap 2718568 2718571 CTGCCCTAGAGGTGC TACTGGTTCTGAG GAA CTCGGAACCA-TA TATGTTTATAGAGAC TERM 3766 2718571 - 2718593 + G 100 -12.8 -3.23335 | overlap 2718568 2718568 CCCTAGAGGTGCTAC TGGTTCTGAG GAA CTCGGAACCA TATATGTTTATAGAG CLK_1901 2718524 - 2718874 + | hypothetical protein TERM 3767 2719014 - 2719060 + T 100 -14.9 -4.17417 | gap 1, opp_overlap 2719015, overlap 2719015 AGATAATGTAAAAAA ATACTAATCTAAAAGGTAGAAG ATAT CTTCTACC-TTTAGATTAGTAC TTTATCTATAATTAA TERM 3768 2719015 - 2719059 + T 100 -18.4 -3.09727 | gap 1, opp_overlap 2719015, overlap 2719014 GATAATGTAAAAAAA TACTAATCTAAAAGGTAGAAG ATAT CTTCTACC-TTTAGATTAGTA CTTTATCTATAATTA TERM 3769 2719059 - 2719015 - T 100 -18.4 -5.55698 | gap 1, opp_overlap 2719015 2719014 GATAATGTAAAAAAA TACTAATCTAAAAGGTAGAAG ATAT CTTCTACC-TTTAGATTAGTA CTTTATCTATAATTA CLK_1902 2720078 - 2719080 - | NAD-dependent glycerol-3-phosphate dehydrogenase family protein TERM 3770 2719219 - 2719229 + g 72 -5.4 -4.70169 | opp_overlap 2719219 TTTAATGTATAAAAG GCTT TAC AAGC TTTTATTCCCTCTAC TERM 3771 2719925 - 2719943 + g 74 -3.2 -5.34055 | GTATTACTACTTTAG GTAAATAT TTT ATATTTTC TTTTTTGATATTTAT CLK_1903 2721568 - 2720249 - | GTP-binding protein TERM 3772 2720540 - 2720562 + g 74 -7.8 -3.71687 | overlap 2720541 ATAACATTCTTTAGC GGTTTGTAAA ACT TTTACAACCC TTTGGCCTGTTTTAG CLK_1904 2722905 - 2721571 - | hypothetical protein phoU 2723975 - 2723322 - | phosphate transport system regulatory protein PhoU TERM 3773 2723569 - 2723582 + g 70 -5.3 -4.60713 | opp_overlap 2723569 TTTTCATTCACATAA GAATC CAAA GATTC TTTTATCATATTTTG pstB 2724754 - 2724005 - | phosphate ABC transporter, ATP-binding protein TERM 3774 2724781 - 2724795 + r 75 -3.6 -5.52909 | CTTAATTATCCCCTG TATACA TTT TGTGTA TTTTTTTGCCTATTA pstA 2725651 - 2724767 - | phosphate ABC transporter, permease protein PstA TERM 3775 2725321 - 2725305 - G 72 -5.1 -4.73341 | AAAAAACCAAATAAA CCTACTA CTA TAGAAGG GAGGGAAGCCATAGT pstC 2726574 - 2725651 - | phosphate ABC transporter, permease protein PstC TERM 3776 2726230 - 2726206 - G 73 -8.7 -3.05775 | opp_overlap 2726208 2726210, overlap 2726205 2726229 AGCAGGTTTTAAAAC TTTATCTCCTA ATT TAGGAGATATA TAATTTATAAATATA TERM 3777 2726208 - 2726228 + g 91 -11.3 -3.06711 | opp_overlap 2726206 2726205, overlap 2726210 CAGGTTTTAAAACTT TATCTCCTA ATT TAGGAGATA TATAATTTATAAATA TERM 3778 2726210 - 2726226 + g 76 -9.5 -3.08467 | opp_overlap 2726206 2726205, overlap 2726208 GGTTTTAAAACTTTA TCTCCTA ATT TAGGAGA TATATAATTTATAAA pstS 2727654 - 2726782 - | phosphate ABC transporter, phosphate-binding protein TERM 3779 2727836 - 2727888 + r 100 -7.5 -5.52079 | gap 1, opp_overlap 2727844, overlap 2727839 2727844 CTAAAATCCTATATA TAGCAAAATGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCATTTTA-TA TTTTTATTTTGATCT TERM 3780 2727839 - 2727886 + r 100 -11.7 -4.37486 | opp_overlap 2727844, overlap 2727836 2727844 AAATCCTATATATAG CAAAATGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCATTTTA TATTTTTATTTTGAT TERM 3781 2727881 - 2727844 - R 100 -12.3 -4.41353 | opp_overlap 2727839 2727836 2727844 CTATATATAGCAAAA TGAAGAAGTTTTTGTTA TAGG CACCAAAAACTTCTTCA TTTTATATTTTTATT TERM 3782 2727844 - 2727881 + r 100 -11.6 -5.0432 | opp_overlap 2727844, overlap 2727839 2727836 CTATATATAGCAAAA TGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCA TTTTATATTTTTATT CLK_1910 2729611 - 2727902 - | putative phosphate regulon sensor protein TERM 3783 2729033 - 2729054 + g 81 -4.5 -5.35222 | GTCTCCTCTTGCTAT TCTTGAAGT TACA AATTCAAGA TTTTTTATAGGTTTT TERM 3784 2729137 - 2729152 + g 85 -2.6 -5.9873 | overlap 2729126 ATAATATTATAGAAA TATAGT ATTT ACTGTA TTTTTTTTCTAATAA CLK_1911 2730321 - 2729623 - | putative phosphate regulon DNA-binding response regulator TERM 3785 2730295 - 2730305 + g 72 -4 -5.08824 | ATGTTCTTCATCGTC TACT ATA AGTA TTTTTTCCATAGCCA CLK_1912 2731051 - 2730332 - | hypothetical protein TERM 3786 2731231 - 2731203 - R 90 -6.9 -5.79595 | opp_overlap 2731208 2731219 TTGCAAAATAAAAAA CCCAATACTATTA CCA TAATAGCATTAAG TTTTTACATGCTTAG nrdR 2731723 - 2731268 - | NrdR family transcriptional regulator CLK_1914 2732117 - 2731854 - | PRC-barrel domain-containing protein TERM 3787 2732225 - 2732197 - R 100 -13.4 -5.77571 | opp_overlap 2732192 2732191 2732201 ATTAAAAAATAAAAA GCTACTGATAAA AAATA TTTATCAGTAGC TTAAAGTGTTCTCTA sigG 2733036 - 2732263 - | RNA polymerase sigma-G factor TERM 3788 2732511 - 2732494 - G 70 -5.5 -4.33417 | opp_overlap 2732494, overlap 2732496 TTGATCCATAACAAA TATGGCG TCAC CGCCATC ATGATATATAGGTTC TERM 3789 2732509 - 2732496 - G 77 -8.1 -3.76888 | opp_overlap 2732494, overlap 2732494 GATCCATAACAAATA TGGCG TCAC CGCCA TCATGATATATAGGT sigE 2733818 - 2733111 - | RNA polymerase sigma-E factor spoIIGA 2734627 - 2733830 - | sporulation factor SpoIIGA TERM 3790 2734750 - 2734801 + r 76 -4.2 -5.27399 | opp_overlap 2734755 2734785, overlap 2734743 2734762 2734788 TATGCCAATATAATT TATAATTTAATATATTATTTTTTT ATTT ACAAAAATAATATATTAAAAAGTA TTTTTTAATATATTA TERM 3791 2734796 - 2734755 - R 90 -10.7 -3.47583 | opp_overlap 2734750 2734762 2734788, overlap 2734785 CAATATAATTTATAA TTTAATATATTATTTTTTT ATTT ACAAAAATAATATATTAAA AAGTATTTTTTAATA TERM 3792 2734816 - 2734785 - R 100 -10.6 -4.87665 | opp_overlap 2734762 2734750 2734788 2734802 2734804, overlap 2734755 2734802 TTTTATTTACAAAAA TAATATATTAAAAA GTAT TTTTTAATATATTA TTAAAATATTTATAA TERM 3793 2734788 - 2734813 + r 73 -7.9 -3.69373 | opp_overlap 2734755 2734785 2734802, overlap 2734762 2734750 2734802 2734804 TATTTACAAAAATAA TATATTAAAAA GTAT TTTTTAATATA TTATTAAAATATTTA TERM 3794 2734932 - 2734912 - R 100 -14.1 -5.76633 | opp_overlap 2734912 TTACATATAAAAAAA GTAGGGAAC AAT GTTCCCTAC TTTATAATTACTTCC TERM 3795 2734912 - 2734932 + r 100 -14.1 -4.10331 | opp_overlap 2734912 TTACATATAAAAAAA GTAGGGAAC AAT GTTCCCTAC TTTATAATTACTTCC ftsZ 2736049 - 2734940 - | cell division protein FtsZ ftsA 2737325 - 2736072 - | cell division protein FtsA TERM 3796 2737480 - 2737464 - R 100 -10.9 -5.88061 | opp_overlap 2737459 2737464 AAAAAAGCAAAAAAA GGAAAGC TAT GCTTTCC TCTAGTTAACTTTTT TERM 3797 2737464 - 2737480 + r 87 -10.9 -2.97122 | opp_overlap 2737464, overlap 2737459 AAAAAAGCAAAAAAA GGAAAGC TAT GCTTTCC TCTAGTTAACTTTTT CLK_1920 2738756 - 2737482 - | glycosyl transferase, group 2 family protein TERM 3798 2737510 - 2737528 + g 76 -9 -3.52668 | TCTAGTTCATCTATA TTCATACT TCT AGTATGAA TTGTATGACTCCATT TERM 3799 2737927 - 2737915 - G 81 -4.9 -5.48303 | ATAAGCTTAAAAAAA TATCT ACT AGATA CATCTGCAAAACCTT TERM 3800 2738352 - 2738363 + g 86 -3 -5.91981 | TGCATCAAACACTGC TATG GCAT CATA TTTTTTTTCCATTTT CLK_1921 2739194 - 2739337 + | hypothetical protein TERM 3801 2739374 - 2739327 - T 76 -9.4 -2.86743 | opp_overlap 2739335 2739344, overlap 2739344 AAATGTTAGATTATA TGATATTTTAAAAAAAAGGACC AAAA GGTCCTTTTTTTAATATTACCA AATGCATAATTATTA TERM 3802 2739335 - 2739366 + T 90 -11.8 -3.03243 | opp_overlap 2739327 2739344, overlap 2739344 GATTATATGATATTT TAAAAAAAAGGACC AAAA GGTCCTTTTTTTAA TATTACCAAATGCAT TERM 3803 2739344 - 2739357 + T 100 -8.1 -5.63374 | opp_overlap 2739327 2739344, overlap 2739335 ATATTTTAAAAAAAA GGACC AAAA GGTCC TTTTTTTAATATTAC TERM 3804 2739357 - 2739344 - T 100 -8.1 -5.79526 | opp_overlap 2739344 2739335, overlap 2739327 ATATTTTAAAAAAAA GGACC AAAA GGTCC TTTTTTTAATATTAC pilT 2740468 - 2739416 - | twitching motility protein aroE 2741246 - 2740470 - | shikimate 5-dehydrogenase TERM 3805 2740524 - 2740505 - G 71 -7.2 -3.84961 | CATTTAAGCACCAAA GACCTATA GCAC TATAGGCC TGAAAAATGAGCATT CLK_1924 2742089 - 2741385 - | sigma-70 family RNA polymerase sigma factor TERM 3806 2742514 - 2742497 - R 93 -7.7 -5.24129 | opp_overlap 2742497 TTTGTGTATAAAAAA GAGCCCT GTTA AGAGCTC ATTTCTTTTTTAACT CLK_1925 2742692 - 2742513 - | hypothetical protein TERM 3807 2742824 - 2742846 + r 82 -10.6 -2.7747 | opp_overlap 2742824, overlap 2742823 TTCAACATAAGAAAA GGAGAGGTTA TTT TTACCTCTCC ATTAATTTCATTATC TERM 3808 2742846 - 2742824 - R 100 -10.6 -4.90381 | opp_overlap 2742824 2742823 TTCAACATAAGAAAA GGAGAGGTTA TTT TTACCTCTCC ATTAATTTCATTATC TERM 3809 2743144 - 2743127 - R 71 -5.6 -4.7254 | opp_overlap 2743127 2743126 2743120 ATTGGGTATTAAAAA GAGTCT ATACTA AGACTC CTTTTTAACTGATTT CLK_1926 2743273 - 2743136 - | hypothetical protein TERM 3810 2743404 - 2743387 - R 82 -8.5 -4.55118 | opp_overlap 2743387 2743390 TAATGCCATACAAAA TAAGAGG TACT CCTCTTA TCTCTCACCACCAAT TERM 3811 2743986 - 2744018 + r 100 -15.8 -2.78049 | overlap 2743983 2743989 TAGTAGTTTTCACAG CGAGGGCTTGATAA AAAAA TTATCAAGCCCTTG TCAATTTTAATCAAT TERM 3812 2743989 - 2744015 + r 100 -13.9 -3.53184 | overlap 2743986 2743983 TAGTTTTCACAGCGA GGGCTTGATAA AAAAA TTATCAAGCCC TTGTCAATTTTAATC CLK_1927 2744296 - 2744123 - | hypothetical protein CLK_1928 2745751 - 2745083 - | hypothetical protein TERM 3813 2745771 - 2745804 + r 80 -2.6 -6.11392 | gap 1, opp_overlap 2745771 TATCCTCCTAAAAAA CACCTCCTAAATCTA ATGTA TA-ATTTGAGAGGTG TTTTTTTATTTATTT CLK_1929 2746306 - 2745830 - | hypothetical protein CLK_1930 2747018 - 2746620 - | ribosomal-protein-alanine acetyltransferase CLK_1931 2747523 - 2747254 - | phage protein CLK_1932 2748031 - 2747747 - | hypothetical protein CLK_1933 2748845 - 2748042 - | hypothetical protein CLK_1934 2749629 - 2748826 - | recombinase TERM 3814 2749763 - 2749781 + r 70 -3.2 -5.39681 | opp_overlap 2749763 CATTCCAATTATTAA TGATTTTT TTA AAATATCA TTTTTATTTAATTAT CLK_1935 2749924 - 2749793 - | hypothetical protein CLK_1936 2750056 - 2749925 - | phage protein CLK_1937 2750714 - 2750866 + | hypothetical protein CLK_1938 2752753 - 2751083 - | penicillin-binding protein TERM 3815 2751609 - 2751629 + g 73 -9.1 -2.65993 | overlap 2751601 2751613 TCTCCTTTTTCCATT TGAATAGCA CCC TGCTGTTCA TAGTGTAAATCTAAT TERM 3816 2751815 - 2751833 + g 70 -6 -4.27842 | opp_overlap 2751815, overlap 2751824 TCCAGTACATTTAAA GCTATCCT TTA AGGATACC TTATTATTTTCTAGT TERM 3817 2751824 - 2751836 + g 72 -6.3 -4.35042 | opp_overlap 2751815, overlap 2751815 TTTAAAGCTATCCTT TAAGG ATA CCTTA TTATTTTCTAGTGCA TERM 3818 2752192 - 2752218 + g 71 -3.1 -5.25656 | overlap 2752193 2752212 TATTATATATTCGCA TTTCTAAAGAC TCTTT GTCTTTAAAAG TTTTTTGATCATTTT TERM 3819 2752798 - 2752762 - R 100 -10.4 -5.19328 | opp_overlap 2752757 2752762 ATCTCATAATAAAAA CACCTCATTTTAGCTA AATTA TAACCAAAATAAGGTG TTTTATTCTAAATTA udk 2753459 - 2752839 - | uridine kinase CLK_1940 2754833 - 2753607 - | U32 family peptidase TERM 3820 2754797 - 2754815 + g 73 -3.8 -5.27779 | overlap 2754800 TTTCTAAATTCCCTG CTGGAGCT AAA AGTTCTGG TTTTTTCATATTAAA CLK_1941 2755482 - 2754826 - | O-methyltransferase family protein CLK_1942 2756596 - 2755565 - | hypothetical protein TERM 3821 2756653 - 2756625 - R 95 -13.3 -3.10513 | opp_overlap 2756625 2756632, overlap 2756629 ATAGGTTAATATAGA CAAACAACCAGCT CTA AGCTAGTTGTTCG TTTAGAATTATAATG TERM 3822 2756625 - 2756653 + r 79 -8.9 -3.70068 | opp_overlap 2756625 2756629, overlap 2756632 ATAGGTTAATATAGA CAAACAACCAGCT CTA AGCTAGTTGTTCG TTTAGAATTATAATG TERM 3823 2756649 - 2756629 - R 95 -10.5 -4.21343 | opp_overlap 2756625 2756632, overlap 2756625 GTTAATATAGACAAA CAACCAGCT CTA AGCTAGTTG TTCGTTTAGAATTAT typA 2758500 - 2756674 - | GTP-binding protein TypA TERM 3824 2756793 - 2756820 + g 73 -9.2 -2.65279 | opp_overlap 2756791, overlap 2756792 2756791 CAAATTCAAGACATT GTTCTAGGGACA TTCT TGTCACTGGAAC TAACTTTAAGGCTTC TERM 3825 2758753 - 2758732 - R 100 -10.3 -5.47821 | opp_overlap 2758731 2758732 ATTTACTCAAAAAAA TTGGATACT TCCT AGTATCCAA CTTGGTTCACCTTAT TERM 3826 2758732 - 2758753 + r 81 -10.3 -2.62513 | opp_overlap 2758732, overlap 2758731 ATTTACTCAAAAAAA TTGGATACT TCCT AGTATCCAA CTTGGTTCACCTTAT TERM 3827 2759056 - 2759018 - R 85 -8.4 -4.68424 | opp_overlap 2759014 2759018 TAATTTAGTTAAAAA GCTATGAATTTGAAATAT TAT ATTTCTAAAATTCATAGC TTACTTTTTTTGAAA TERM 3828 2759018 - 2759056 + r 77 -7.9 -4.03885 | gap 2, opp_overlap 2759018, overlap 2759014 TAATTTAGTTAAAAA GCTATGAAT-TT-GAAATA TTA TATTTCTAAAATTCATAGC TTACTTTTTTTGAAA CLK_1944 2760855 - 2759146 - | RNA-metabolizing metallo-beta-lactamase family protein TERM 3829 2759921 - 2759937 + g 72 -8.1 -3.25223 | TCTCCTTGACTTCCT GTAGTTA TTA TAACTAC TTGGTCATCTGGATA TERM 3830 2759953 - 2759983 + g 80 -2.1 -5.77632 | gap 1, overlap 2759955 TTGGTCATCTGGATA TTTATTTAT-AGCA TCTA TGCTTATAAATATA TTTTTTTCTGCTTTT CLK_1945 2761355 - 2760903 - | FUR family transcriptional regulator CLK_1946 2761731 - 2761474 - | hypothetical protein CLK_1947 2762158 - 2761745 - | hypothetical protein TERM 3831 2762271 - 2762255 - R 93 -9.5 -4.52589 | TCTCTTTATACAAAA CTCCTAT TGC ATAGGAG TAAGCGATTCACACC TERM 3832 2762285 - 2762301 + r 76 -9.5 -2.92086 | overlap 2762284 AGTAAGCGATTCACA CCAAATC ATA GATTTGG GTTTACTGCTTATAT TERM 3833 2762359 - 2762334 - R 100 -13.5 -4.2349 | opp_overlap 2762334 2762340, overlap 2762340 TTTCCATATTTAAAA TAAAAATGCCC TAAA GGGCATTTTTA TTTTTTTAATTTATC TERM 3834 2762334 - 2762359 + r 100 -13.5 -5.75822 | opp_overlap 2762334 2762340, overlap 2762340 TTTCCATATTTAAAA TAAAAATGCCC TAAA GGGCATTTTTA TTTTTTTAATTTATC TERM 3835 2762340 - 2762353 + r 100 -8.1 -5.86609 | opp_overlap 2762334 2762340, overlap 2762334 TATTTAAAATAAAAA TGCCC TAAA GGGCA TTTTTATTTTTTTAA TERM 3836 2762353 - 2762340 - R 100 -8.1 -5.48213 | opp_overlap 2762340 2762334, overlap 2762334 TATTTAAAATAAAAA TGCCC TAAA GGGCA TTTTTATTTTTTTAA CLK_1948 2762616 - 2762365 - | hypothetical protein alaS 2765369 - 2762730 - | alanyl-tRNA synthetase TERM 3837 2765438 - 2765413 - R 100 -5.5 -6.17268 | gap 1, overlap 2765414 TTATAATAAAAAAAA CCTTCAATCCCT AAA AGGGA-CGAAAG TTATATTCCGCGGTA CLK_1950 2766895 - 2765867 - | hypothetical protein CLK_1951 2767396 - 2766908 - | PRC-barrel domain-containing protein TERM 3838 2767525 - 2767492 - R 100 -9.8 -5.52384 | opp_overlap 2767499 2767515, overlap 2767499 GTTTTATCAAAAAAA TAAAAAATACCCTC TCTAAT GAGGGTATTTTTAA AATATCTTATATAAA TERM 3839 2767518 - 2767499 - R 100 -7.9 -6.12458 | opp_overlap 2767499 2767515, overlap 2767492 CAAAAAAATAAAAAA TACCCTC TCTAAT GAGGGTA TTTTTAAAATATCTT TERM 3840 2767499 - 2767518 + r 83 -7.9 -4.6644 | opp_overlap 2767499 2767492, overlap 2767515 CAAAAAAATAAAAAA TACCCTC TCTAAT GAGGGTA TTTTTAAAATATCTT CLK_1952 2768006 - 2767578 - | putative iron-sulfur cluster assembly protein iscS 2769201 - 2768008 - | cysteine desulfurase CLK_1954 2769640 - 2769194 - | rrF2 family protein CLK_1955 2771110 - 2769860 - | AAA family ATPase TERM 3841 2771158 - 2771130 - R 86 -7.5 -4.7373 | opp_overlap 2771130 TCACCTCACTAAAAA GACTTTAACTCTC ATT GTAAGTTAAAGCC CTTGTTTTATCAAGT TERM 3842 2771222 - 2771251 + r 91 -10.8 -3.62522 | opp_overlap 2771239 TAAACAGAGTTCTTG GATTCAGAGGGA ATTTAC TCCCTCTGAAGC TTATTAACAGAATTC TERM 3843 2771288 - 2771264 - R 70 -7.2 -3.71552 | opp_overlap 2771263 2771260 AGCTTATTAACAGAA TTCTTAGGAG TTTTG CTCCTTAGAA GTCATTACCTTTTAG TERM 3844 2771374 - 2771328 - R 82 -10.4 -2.91912 | gap 2, opp_overlap 2771339 TTATCCAGGGACATA CCCACTCT-TTACTCCCA-CTT TGAAG AAGCTGGGAGTATTAGAGCGGG TAATCATCGGATAAA hisK 2772224 - 2771457 - | histidinol-phosphatase TERM 3845 2772258 - 2772308 + r 72 -8.5 -3.28924 | gap 1, opp_overlap 2772257 2772259 2772262, overlap 2772259 2772261 ATATTCAATATAAAT AGAGTTCTTAGCTTTAG-AGGAGT TTTT ACTCCTACTAAGGCTTAGAAATCG TTATCCAGGGACATA TERM 3846 2772307 - 2772259 - R 90 -9.8 -3.70511 | gap 1, opp_overlap 2772258 2772259 2772261, overlap 2772257 2772262 TATTCAATATAAATA GAGTTCTTAGCTTTAG-AGGAGT TTTT ACTCCTACTAAGGCTTAGAAATC GTTATCCAGGGACAT TERM 3847 2772259 - 2772307 + r 86 -12 -2.57211 | gap 1, opp_overlap 2772259 2772257 2772262, overlap 2772258 2772261 TATTCAATATAAATA GAGTTCTTAGCTTTAG-AGGAGT TTTT ACTCCTACTAAGGCTTAGAAATC GTTATCCAGGGACAT TERM 3848 2772261 - 2772305 + r 73 -8.8 -2.82623 | gap 1, opp_overlap 2772259 2772257 2772262, overlap 2772259 2772258 TTCAATATAAATAGA GTTCTTAGCTTTAG-AGGAGT TTTT ACTCCTACTAAGGCTTAGAAA TCGTTATCCAGGGAC TERM 3849 2772304 - 2772262 - R 79 -10.1 -2.64681 | gap 1, opp_overlap 2772261 2772259 2772258, overlap 2772259 2772257 TCAATATAAATAGAG TTCTTAGCTTTAG-AGGAGT TTTT ACTCCTACTAAGGCTTAGAA ATCGTTATCCAGGGA TERM 3850 2772468 - 2772456 - R 77 -3.5 -5.68023 | overlap 2772467 GTATAAGTAAAAAAA TAATT TTA AATTA ATATCTATATTATAC CLK_1957 2773447 - 2772539 - | auxin efflux carrier family protein TERM 3851 2773538 - 2773505 - R 73 -3.3 -5.45802 | gap 1, opp_overlap 2773526, overlap 2773506 TTTTCAAAAGAAAAA TCCCCCTTT-TCATTA TTA TACTAAAAAAGGAGGA TCTTTTTATATGTTA CLK_1958 2774421 - 2773555 - | DegV family protein CLK_1959 2774749 - 2775333 + | hypothetical protein TERM 3852 2775437 - 2775407 - T 95 -12.8 -3.63046 | opp_overlap 2775412 2775435, overlap 2775412 ATTATAAGTATATAA TAAAAGCAGGAATT TTC AATTCCTGCTTTTT AGTTTACACTAAATT TERM 3853 2775412 - 2775432 + T 100 -12.7 -4.99134 | opp_overlap 2775407 2775412 AAGTATATAATAAAA GCAGGAATT TTC AATTCCTGC TTTTTAGTTTACACT TERM 3854 2775432 - 2775412 - T 100 -12.7 -4.86822 | opp_overlap 2775412, overlap 2775407 AAGTATATAATAAAA GCAGGAATT TTC AATTCCTGC TTTTTAGTTTACACT TERM 3855 2775481 - 2775463 - T 72 -6 -4.47307 | overlap 2775464 AAATTAATATGAAAA CCTCCTAT TAC ATAGGAGT AAGCGATTCACACCA TERM 3856 2775480 - 2775464 - T 80 -9.5 -3.26758 | overlap 2775463 AATTAATATGAAAAC CTCCTAT TAC ATAGGAG TAAGCGATTCACACC TERM 3857 2775494 - 2775510 + T 76 -9.5 -2.93335 | overlap 2775493 AGTAAGCGATTCACA CCAAATC ATA GATTTGG GTTCTATTTATACGA TERM 3858 2775545 - 2775528 - T 78 -8.5 -3.84825 | TCTATTTATACGAAA CTCCTAT TTGC ATAGGAG TAAGCGACTCACACC CLK_1960 2776574 - 2775585 - | ornithine cyclodeaminase family protein TERM 3859 2776632 - 2776583 - R 71 -8.3 -3.05709 | opp_overlap 2776583 2776615, overlap 2776582 2776580 TAAGCATAAAAATAC CTCCATAATATAATATTAAAC TCTTATAT ATATAATATTACATTATGGAG TATTATTAAATAGAA CLK_1961 2778063 - 2776696 - | sodium:alanine symporter family protein TERM 3860 2777809 - 2777782 - G 89 -9.2 -4.24606 | opp_overlap 2777789 AATCCACATCCAAAA TATAGCTCCTGG TCCA CCAGATGCTATA GCAGTTGCAGACCCA TERM 3861 2778510 - 2778531 + r 75 -3.9 -5.60864 | opp_overlap 2778494 2778492 2778500, overlap 2778492 2778500 AAAAATATTTACAAA TATATTTAT ATTT ATAGATATA TTTTTTTACTATATA CLK_1962 2780143 - 2778809 - | sodium:alanine symporter family protein TERM 3862 2779889 - 2779862 - G 100 -11.4 -4.24606 | opp_overlap 2779869 AACCCACATCCAAAA TATAGCACCTGG TCCT CCAGCTGCTATA GCCGTAGCAGCTCCT TERM 3863 2780583 - 2780569 - g 93 -8.6 -4.97402 | opp_overlap 2780568 TAAAATTTAGAAAAA GTGATG AAA CATCAC ATATTAGAATTCTTC CLK_1963 2780520 - 2781173 + | hypothetical protein TERM 3864 2781256 - 2781216 - T 70 -3.4 -5.40474 | opp_overlap 2781218 2781254, overlap 2781217 2781218 ATTTTTTGAAAAAAA CGCCCTATTTAGTTATAA TTTCT CTTTAACTAAATAGGGTT TTTAATTTATAAAAA TERM 3865 2781218 - 2781254 + T 100 -9.7 -5.04601 | opp_overlap 2781217 2781216 2781218 TTTTTGAAAAAAACG CCCTATTTAGTTATA ATTTCTC TTTAACTAAATAGGG TTTTTAATTTATAAA TERM 3866 2781254 - 2781218 - T 82 -10.4 -2.89655 | opp_overlap 2781218, overlap 2781217 2781216 TTTTTGAAAAAAACG CCCTATTTAGTTATAA TTTCT CTTTAACTAAATAGGG TTTTTAATTTATAAA CLK_1964 2781787 - 2781311 - | copper amine oxidase domain-containing protein CLK_1965 2785912 - 2782151 - | phosphoribosylformylglycinamidine synthase TERM 3867 2783596 - 2783626 + g 72 -6.2 -4.20883 | gap 1 AAAATTCTCTTTGTG CCTTTAG-GGCTC CTAAAA GAGCCGCTAATGG TTTTCCCCATTTTTC CLK_1966 2787459 - 2786110 - | MATE efflux family protein CLK_1967 2789933 - 2787456 - | putative phosphoenolpyruvate synthase TERM 3868 2789569 - 2789588 + g 73 -8.6 -3.17527 | opp_overlap 2789569, overlap 2789567 CTTGCTTCCGGCAAA TCTTCGGC TGTT GCTGAAGA TCTTACTGCTAAATG TERM 3869 2789709 - 2789733 + g 95 -11.7 -3.45764 | opp_overlap 2789715, overlap 2789706 TTCAGTTTTATCCTT TATAGATAAAG TTT CTTTATCTATA TTACTAATTTTTTGT CLK_1968 2790213 - 2789938 - | acyl carrier protein-like protein CLK_1969 2791757 - 2790216 - | putative acyl-CoA synthetase TERM 3870 2790563 - 2790575 + g 75 -4.9 -5.06052 | TATTTTTCATCCTAC CTTTT AAA AAAAG TTTTCTATTTTTTAG CLK_1970 2792784 - 2791774 - | putative 3-oxoacyl-(acyl-carrier-protein) synthase III CLK_1971 2793681 - 2792794 - | putative bacT protein CLK_1972 2795551 - 2793722 - | putative nonribosomal peptide synthetase TERM 3871 2794167 - 2794177 + g 88 -4 -5.80364 | opp_overlap 2794167 AAATTAACCAATAAA GATA ATT TATC TTTTTTTATTACCAT CLK_1973 2796103 - 2795591 - | acetyltransferase TERM 3872 2795720 - 2795736 + g 71 -2.3 -5.48213 | CATATTATTACTACT TTTTACT AAA AGAAAAA TTTTTATTTTGGGTA TERM 3873 2795954 - 2795970 + g 85 -8.1 -4.61199 | TCTGTATGCTTTTTT CAGTATT TCT AATACTG TTTTATATGTAGGAT CLK_1974 2796355 - 2796107 - | D-alanyl carrier protein,-like protein CLK_1975 2797380 - 2796364 - | hypothetical protein CLK_1976 2798570 - 2797377 - | putative seryl-tRNA synthetase TERM 3874 2797657 - 2797669 + g 90 -4.9 -5.71983 | overlap 2797657 GATTTACCTATAATT TGAAA AAA TTTCA TTTTTTTATGATTAC TERM 3875 2798242 - 2798264 + g 72 -7.8 -3.68988 | opp_overlap 2798245, overlap 2798245 AAAAACAACCCACTA TAAGCAAAAG ATC CTTTTGCTAA TTCTCTTACATCACC TERM 3876 2798245 - 2798261 + g 75 -9.5 -2.95007 | opp_overlap 2798245, overlap 2798242 AACAACCCACTATAA GCAAAAG ATC CTTTTGC TAATTCTCTTACATC TERM 3877 2798261 - 2798245 - G 79 -9.5 -3.45434 | opp_overlap 2798245 2798242 AACAACCCACTATAA GCAAAAG ATC CTTTTGC TAATTCTCTTACATC CLK_1977 2799329 - 2798589 - | hypothetical protein TERM 3878 2798738 - 2798701 - G 73 -8.1 -3.43742 | gap 1, opp_overlap 2798693 2798701 2798700, overlap 2798699 2798690 AAAATTTCAATAATA TTGTTTGAAATTCTTTTA ACA TATAAGAATTTC-AACAA CTTATTAAGACTATT TERM 3879 2799710 - 2799676 - R 91 -8.1 -4.9725 | opp_overlap 2799679 2799702, overlap 2799679 ATTTTCACACAAAAA TAACACTTGAAATTC TCCTT AAATTTCAAGTGTTT TACAGTTGTTTTATT TERM 3880 2799679 - 2799707 + r 84 -9.1 -4.26634 | opp_overlap 2799679 2799676, overlap 2799702 TTCACACAAAAATAA CACTTGAAATT CTCCTTA AATTTCAAGTG TTTTACAGTTGTTTT TERM 3881 2799707 - 2799679 - R 100 -9.8 -4.58943 | opp_overlap 2799679 2799702, overlap 2799676 TTCACACAAAAATAA CACTTGAAATTC TCCTT AAATTTCAAGTG TTTTACAGTTGTTTT TERM 3882 2799702 - 2799718 + r 70 -3.7 -5.25154 | opp_overlap 2799679 2799676, overlap 2799679 ATTCTCCTTAAATTT CAAGTGT TTT ACAGTTG TTTTATTATTTTTTT TERM 3883 2799742 - 2799783 + r 100 -16.3 -3.32233 | opp_overlap 2799747 2799752, overlap 2799747 2799752 TTTTTTTGTATATCA AAAAATAAAAGGAAGAATG TTTT CATTCTTCCTTTTATTTTA TATATTTAATGATTA TERM 3884 2799778 - 2799747 - R 100 -16.2 -5.21709 | opp_overlap 2799747 2799742 2799752, overlap 2799752 TTGTATATCAAAAAA TAAAAGGAAGAATG TTTT CATTCTTCCTTTTA TTTTATATATTTAAT TERM 3885 2799747 - 2799778 + r 100 -16.2 -4.74917 | opp_overlap 2799747 2799752, overlap 2799742 2799752 TTGTATATCAAAAAA TAAAAGGAAGAATG TTTT CATTCTTCCTTTTA TTTTATATATTTAAT TERM 3886 2799773 - 2799752 - R 100 -11.7 -5.45813 | opp_overlap 2799747 2799742 2799752, overlap 2799747 TATCAAAAAATAAAA GGAAGAATG TTTT CATTCTTCC TTTTATTTTATATAT TERM 3887 2799752 - 2799773 + r 100 -11.7 -5.24647 | opp_overlap 2799752 2799747, overlap 2799747 2799742 TATCAAAAAATAAAA GGAAGAATG TTTT CATTCTTCC TTTTATTTTATATAT argF 2800797 - 2799796 - | ornithine carbamoyltransferase TERM 3888 2800200 - 2800226 + g 70 -5.2 -4.64861 | opp_overlap 2800206, overlap 2800203 CTATTTCTTTGCATT TAGCAACTAATG TAG CATCAGTTGGTA TTTCTTTTGGAGAAA TERM 3889 2800913 - 2800970 + r 100 -15.3 -4.21275 | opp_overlap 2800927, overlap 2800918 TACTACTCTCGTACC TGAAGTTCCATTAATAGCGTCTTTTGC TTTT GCAAGGGATGCTATTAATGCAATTTTA TTTTCACTAGATTGA arcC 2801836 - 2800892 - | carbamate kinase TERM 3890 2800918 - 2800965 + g 100 -15.2 -5.10933 | opp_overlap 2800927, overlap 2800913 CTCTCGTACCTGAAG TTCCATTAATAGCGTCTTTTGC TTTT GCAAGGGATGCTATTAATGCAA TTTTATTTTCACTAG TERM 3891 2802340 - 2802371 + r 90 -11 -3.18514 | gap 1, opp_overlap 2802339 2802337 2802340, overlap 2802337 2802335 ATATCACGAGAATAT GGGCTTATGCTCCTG TTT TGGGA-CATAAGCCC TATCTATTATGTGTA TERM 3892 2802371 - 2802340 - R 82 -10.9 -2.5751 | opp_overlap 2802340 2802337 2802335, overlap 2802339 2802337 ATATCACGAGAATAT GGGCTTATGCTCC TGTTTT GGGACATAAGCCC TATCTATTATGTGTA glyA 2803641 - 2802400 - | serine hydroxymethyltransferase CLK_1981 2803815 - 2804585 + | hypothetical protein CLK_1982 2804582 - 2805055 + | hypothetical protein TERM 3893 2805152 - 2805099 - T 100 -18.7 -2.94669 | gap 1, opp_overlap 2805112 2805115 2805120, overlap 2805112 2805115 2805120 AAAAATAATTAAGGA GCATG-TTATGAAATAAGGAAAGTGC GCG GCACTTTCCTTATTTCATAAACATAG TAAAGGTGGAAACTA TERM 3894 2805138 - 2805112 - T 100 -16.8 -3.75169 | opp_overlap 2805112 2805115 2805120, overlap 2805099 2805115 2805120 GAGCATGTTATGAAA TAAGGAAAGTGC GCG GCACTTTCCTTA TTTCATAAACATAGT TERM 3895 2805112 - 2805138 + T 100 -16.8 -3.73953 | opp_overlap 2805112 2805099 2805115 2805120, overlap 2805115 2805120 GAGCATGTTATGAAA TAAGGAAAGTGC GCG GCACTTTCCTTA TTTCATAAACATAGT TERM 3896 2805135 - 2805115 - T 100 -14.1 -4.00756 | opp_overlap 2805112 2805115 2805120, overlap 2805112 2805099 2805120 CATGTTATGAAATAA GGAAAGTGC GCG GCACTTTCC TTATTTCATAAACAT TERM 3897 2805115 - 2805135 + T 100 -14.1 -4.0031 | opp_overlap 2805115 2805112 2805099 2805120, overlap 2805112 2805120 CATGTTATGAAATAA GGAAAGTGC GCG GCACTTTCC TTATTTCATAAACAT TERM 3898 2805130 - 2805120 - T 71 -6.8 -4.16371 | opp_overlap 2805115 2805112 2805120, overlap 2805115 2805112 2805099 TATGAAATAAGGAAA GTGC GCG GCAC TTTCCTTATTTCATA TERM 3899 2805120 - 2805130 + T 71 -6.8 -4.16371 | opp_overlap 2805120 2805115 2805112 2805099, overlap 2805115 2805112 TATGAAATAAGGAAA GTGC GCG GCAC TTTCCTTATTTCATA CLK_1983 2805405 - 2805136 - | hypothetical protein CLK_1984 2806428 - 2805604 - | putative hydrolase CLK_1985 2806541 - 2807017 + | putative lipoprotein TERM 3900 2807265 - 2807289 + F 82 -9.5 -3.3636 | opp_overlap 2807264, overlap 2807262 TATAATAGATATTAT TATGATAACAG AAC TTGTTATCATA TATTCTCTCCTATAA TERM 3901 2808843 - 2808829 - g 70 -8.6 -2.52279 | overlap 2808828 2808824 2808832 GGATGAAAGATACAT GAAGGA AAT TCCTTC CAATGTAGAACTTCC TERM 3902 2809286 - 2809263 - g 81 -3.9 -5.51612 | opp_overlap 2809265 ACATAAAAAATAAAA TAGAGGATT ATTTAA ATTCCTCTA GTATAAATAAAAAAT CLK_1986 2807429 - 2812294 + | hypothetical protein TERM 3903 2812525 - 2812515 - g 82 -4 -5.60864 | opp_overlap 2812515, overlap 2812506 2812504 2812523 TATAGATCAAAAAAA TTCT AGA AGAA GCTTTTTGATAACTA TERM 3904 2813439 - 2813456 + G 71 -7.7 -3.40674 | opp_overlap 2813439, overlap 2813438 TACTATAAAATCAGA GTGGCAC TATA GTGCTAC ATTTTTAGATGGTGC CLK_1987 2812369 - 2813592 + | hypothetical protein TERM 3905 2814582 - 2814572 - g 72 -4 -5.01422 | TTATAGAAAAACAAA TTTC TAC GAAA AATATCTATTGGGAA CLK_1988 2813745 - 2814800 + | hypothetical protein TERM 3906 2814831 - 2814787 - f 86 -3.7 -6.15717 | opp_overlap 2814793, overlap 2814788 2814791 2814793 TAAATATAAAAAAAA TTAATAGCAAATAAGCTTAAA AAT TTTTAGCTCATTTGCTTATAT CTTATTAATATTTTA TERM 3907 2814830 - 2814788 - f 75 -7.2 -4.2577 | opp_overlap 2814793, overlap 2814787 2814791 2814793 AAATATAAAAAAAAT TAATAGCAAATAAGCTTAAA AAT TTTTAGCTCATTTGCTTATA TCTTATTAATATTTT TERM 3908 2814827 - 2814791 - f 82 -8.9 -4.16605 | opp_overlap 2814793, overlap 2814788 2814787 2814793 TATAAAAAAAATTAA TAGCAAATAAGCTTAAA AAT TTTTAGCTCATTTGCTT ATATCTTATTAATAT TERM 3909 2814793 - 2814825 + F 84 -9.3 -3.77437 | opp_overlap 2814791 2814788 2814787 2814793 TAAAAAAAATTAATA GCAAATAAGCTTAAA AAT TTTTAGCTCATTTGC TTATATCTTATTAAT TERM 3910 2814825 - 2814793 - f 95 -11.5 -3.6311 | opp_overlap 2814793, overlap 2814791 2814788 2814787 TAAAAAAAATTAATA GCAAATAAGCTTAAA AAT TTTTAGCTCATTTGC TTATATCTTATTAAT CLK_1989 2814982 - 2815821 + | hypothetical protein CLK_1990 2817660 - 2816125 - | M20/M25/M40 family peptidase CLK_1991 2818586 - 2817651 - | putative magnesium and cobalt transport protein CorA TERM 3911 2818757 - 2818717 - R 83 -6 -5.36314 | opp_overlap 2818716 2818717 2818722, overlap 2818710 TAAAACATTAAAAAA CTAACTA-AATTTTTTATAT TTC AT-TAAAAAATTATAGTTAG CTTTATTGTAAAAAT TERM 3912 2818968 - 2819001 + r 93 -11.9 -3.20747 | gap 1, opp_overlap 2818962 2818971 2818987, overlap 2818969 TCCCCTAAAGGGTAA C-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTG TTAATAAGCTTTAGT TERM 3913 2818969 - 2818999 + r 100 -15.6 -3.16288 | opp_overlap 2818962 2818971 2818987, overlap 2818968 CCCCTAAAGGGTAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTTA TERM 3914 2818997 - 2818971 - R 89 -12.4 -2.7728 | opp_overlap 2818969 2818968, overlap 2818962 2818987 CCTAAAGGGTAACGA CTTCTAAGGAGT AAA ACTCCTAAGAAG TCTGTTAATAAGCTT TERM 3915 2819040 - 2819009 - R 100 -13.1 -3.62522 | opp_overlap 2819001 GAAGTCTGTTAATAA GCTTTAGTGGGAG TAAAAG CTCCCTCTAAAGC TAAGAACTCTGTTTA CLK_1992 2819616 - 2819062 - | 5-formyltetrahydrofolate cyclo-ligase family protein hprK 2820532 - 2819609 - | HPr(Ser) kinase/phosphatase CLK_1994 2820752 - 2820564 - | hypothetical protein CLK_1995 2821661 - 2820924 - | DedA family protein CLK_1996 2822346 - 2821627 - | DedA family protein TERM 3916 2822308 - 2822326 + gr 91 -5.4 -5.91981 | opp_overlap 2822308 TAATAAAACAATGAA TATTATGG GAA CTATAATA TTTTTTTTAGATTTT CLK_1997 2823601 - 2822456 - | hypothetical protein CLK_1998 2824599 - 2823601 - | hypothetical protein CLK_1999 2825278 - 2824577 - | hypothetical protein TERM 3917 2824727 - 2824751 + g 87 -2.2 -6.25578 | overlap 2824732 ATCTATATCTTCATA TTTGCCTGTA AAATC TACAGTTAAA TTTTTTTTATTTAAT CLK_2000 2825955 - 2825275 - | glycosyl transferase, group 2 family protein TERM 3918 2825655 - 2825630 - G 81 -6.3 -5.04325 | TTTAAATCACAAAAA TATATAGGAAA TCCG CCTCCTATATA CCCATCTTTTATAGC CLK_2001 2826066 - 2826197 + | hypothetical protein TERM 3919 2826309 - 2826261 - T 82 -10.7 -2.92951 | opp_overlap 2826266, overlap 2826266 TAGATTTCTATAAAT TAAAAGAGTATGTATTAAGCT ATAATGG AGTTTAATACATACTCTTATA TATAAGGATTATTAA TERM 3920 2826304 - 2826266 - T 100 -10.6 -4.61873 | opp_overlap 2826266, overlap 2826261 TTCTATAAATTAAAA GAGTATGTATTAAGCT ATAATGG AGTTTAATACATACTC TTATATATAAGGATT TERM 3921 2826266 - 2826304 + T 95 -12.8 -3.5947 | opp_overlap 2826266 2826261 TTCTATAAATTAAAA GAGTATGTATTAAGCT ATAATGG AGTTTAATACATACTC TTATATATAAGGATT glpX 2827326 - 2826352 - | fructose-1,6-bisphosphatase, class II CLK_2003 2827810 - 2827986 + | hypothetical protein TERM 3922 2827979 - 2827966 - T 76 -2.5 -5.83211 | overlap 2827974 TATGAAAATAAAAAA TATAA AAAT TTATA CAAATAAAACAACCA TERM 3923 2828012 - 2827989 - T 91 -8.2 -5.05113 | opp_overlap 2827992, overlap 2827992 TTTATACAAATAAAA CAACCACAGA TTTA TCTGTGGTTT CATTTTTAATAAACA TERM 3924 2827992 - 2828009 + T 95 -9.9 -4.35327 | opp_overlap 2827989 2827992 ATACAAATAAAACAA CCACAGA TTTA TCTGTGG TTTCATTTTTAATAA TERM 3925 2828009 - 2827992 - T 100 -9.9 -4.60302 | opp_overlap 2827992, overlap 2827989 ATACAAATAAAACAA CCACAGA TTTA TCTGTGG TTTCATTTTTAATAA CLK_2004 2828419 - 2828018 - | hypothetical protein TERM 3926 2828709 - 2828691 - R 73 -3.2 -5.48213 | overlap 2828693 CATCTAAAATAAAAA CATTATAA GCT TTATAAAG AAAAAACTACAAACT TERM 3927 2828751 - 2828716 - R 93 -7.2 -5.72622 | gap 1, opp_overlap 2828716 2828723 TTTATAAAGAAAAAA CTACAAACTTAGAA-TA TTA TATTTCTAAGTTCATAG TTTTTAAATTTAAAA TERM 3928 2828845 - 2828898 + r 90 -11.1 -3.28924 | opp_overlap 2828849 2828850, overlap 2828848 2828857 TTATACCATAATAAA CAAAGTTCTAAGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAAATGG TTATCCAGAAACGTA TERM 3929 2828848 - 2828895 + r 85 -11.4 -2.82623 | opp_overlap 2828849 2828850, overlap 2828845 2828857 TACCATAATAAACAA AGTTCTAAGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAAA TGGTTATCCAGAAAC TERM 3930 2828894 - 2828849 - R 100 -17.1 -4.7458 | opp_overlap 2828848 2828845 2828857, overlap 2828850 ACCATAATAAACAAA GTTCTAAGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAA ATGGTTATCCAGAAA TERM 3931 2828893 - 2828850 - R 100 -20.6 -3.43122 | opp_overlap 2828848 2828845 2828857, overlap 2828849 CCATAATAAACAAAG TTCTAAGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAA AATGGTTATCCAGAA CLK_2005 2830173 - 2829004 - | metallo-beta-lactamase family protein/flavodoxin TERM 3932 2829149 - 2829135 - G 74 -8.6 -3.30243 | ATCTATCTGTCATAA GAGAAG GAC CTTCTC CACTCCAACCATAAG CLK_2006 2830993 - 2830487 - | hypothetical protein TERM 3933 2830559 - 2830538 - G 73 -8.1 -3.494 | opp_overlap 2830537 2830538 TAATGTTTTAGACAA TGCTTTTAC TAAA GCAAAAGCA ATTATACCATCTACT TERM 3934 2831013 - 2831044 + r 100 -9.8 -5.54907 | gap 1 TTATCCCCCTGTATA GTTTAGTGTATA-TA CAG TAGTATACACTAAAC TTTTTCTTTTGTAAA TERM 3935 2831712 - 2831663 - R 86 -9.1 -4.4078 | gap 1, opp_overlap 2831663 2831668, overlap 2831668 TGTTCCTAATTAAAA TTAAACAGCCATAAATCTGAAA TTTAATT TTTCAAATTTATAGCTG-TTAA CTTTTAATACATAAT TERM 3936 2831708 - 2831668 - R 100 -11.5 -4.27062 | opp_overlap 2831668 2831663, overlap 2831663 CTAATTAAAATTAAA CAGCCATAAATCTGAAA TTTAATT TTTCAAATTTATAGCTG TTAACTTTTAATACA CLK_2007 2832898 - 2832035 - | IUNH family nucleoside hydrolase TERM 3937 2832253 - 2832267 + g 79 -5.8 -5.09225 | opp_overlap 2832252 CCCAATTGCAAAAGG CTTTTA TAT TAAAAG TTTTTTCCATAGAAT def 2833452 - 2832916 - | peptide deformylase TERM 3938 2833415 - 2833393 - G 71 -8.6 -2.87622 | overlap 2833392 TATTGCCATAATAAC TCTTAAAGCT AAA AGCTTTAAAA CTCCCTCCTTTTTAT TERM 3939 2833681 - 2833629 - R 100 -14.5 -2.70115 | opp_overlap 2833633 2833634 2833647, overlap 2833647 TAAAGTAAAACATAC TTACTTTGTATAAAAAAAGCAGCGA TTT TCGCTGCTTTTTTTATACCATATTA CTTTGCTTTTCTTCC TERM 3940 2833633 - 2833678 + r 100 -15.9 -3.69699 | gap 1, opp_overlap 2833629 2833647, overlap 2833634 2833647 GTAAAACATACTTAC T-TTGTATAAAAAAAGCAGCGA TTT TCGCTGCTTTTTTTATACCATA TTACTTTGCTTTTCT TERM 3941 2833634 - 2833676 + r 100 -21 -3.40546 | opp_overlap 2833629 2833647, overlap 2833633 2833647 TAAAACATACTTACT TTGTATAAAAAAAGCAGCGA TTT TCGCTGCTTTTTTTATACCA TATTACTTTGCTTTT TERM 3942 2833663 - 2833647 - R 100 -12.3 -5.60993 | opp_overlap 2833634 2833633 2833647, overlap 2833629 CTTTGTATAAAAAAA GCAGCGA TTT TCGCTGC TTTTTTTATACCATA TERM 3943 2833647 - 2833663 + r 100 -12.3 -5.626 | opp_overlap 2833647 2833629, overlap 2833634 2833633 CTTTGTATAAAAAAA GCAGCGA TTT TCGCTGC TTTTTTTATACCATA CLK_2009 2834319 - 2833669 - | V-type ATPase, D subunit TERM 3944 2834139 - 2834129 - G 72 -4 -5.1675 | opp_overlap 2834129 2834132 CTAGCCATTAAAAAA TCTT TAA AAGA TCCTTCTAATTCCTT CLK_2010 2835733 - 2834348 - | V-type ATPase, B subunit TERM 3945 2834715 - 2834725 + g 89 -6.8 -5.42131 | AATACATCTATCGGA GGCA TTA TGCC TTTTTTGTATAATTC CLK_2011 2837504 - 2835726 - | V-type ATPase, A subunit TERM 3946 2837015 - 2837029 + g 71 -7.2 -3.75517 | overlap 2837027 TGAAGTCTCCTTCTT CTATAG TTT CTATAG TTCCTTTTATACCAT TERM 3947 2837295 - 2837313 + g 76 -9.6 -2.83715 | opp_overlap 2837290 AACACTTAAAGGTTC CCCAGTAG TTA TTACTGGG TCTCCTGGTGCTAAA CLK_2012 2837826 - 2837518 - | V-type ATPase, G subunit CLK_2013 2838820 - 2837819 - | V-type ATPase, C subunit TERM 3948 2838511 - 2838526 + g 78 -6.2 -4.75289 | opp_overlap 2838510 CTTTCTCTAATATAT GTTCTT TTAT AAGAAC TTTTATATTATGATA CLK_2014 2839434 - 2838835 - | V-type ATPase, E subunit CLK_2015 2839949 - 2839473 - | V-type ATPase, K subunit CLK_2016 2841923 - 2839962 - | V-type ATPase, I subunit TERM 3949 2841765 - 2841777 + g 70 -6.3 -4.19258 | opp_overlap 2841762, overlap 2841762 GTCTGATACCAACTC TGACT GAG AGTCA TTTTGCATAAACTCT CLK_2017 2842236 - 2841910 - | putative V-type ATPase, G subunit TERM 3950 2842536 - 2842552 + r 76 -2.4 -5.83822 | overlap 2842528 CCTTTTTTTTAATTT TTTAAA TTTTC TTTAAA TTTTTTTTAGCTATA CLK_2018 2844244 - 2842559 - | putative B12-binding Fe-S oxidoreductase CLK_2019 2844764 - 2844219 - | hypothetical protein TERM 3951 2844328 - 2844338 + gr 70 -4 -4.87803 | overlap 2844333 TACACTCCATCGGAA GATT TTA AATC TTTTATTTCAAAATA TERM 3952 2844977 - 2844959 - R 100 -6 -6.77747 | opp_overlap 2844959, overlap 2844961 CAATAAAAAAAAAAA TCCTCCTC TTA AAGGAGAA TCTTATTTTTTACCT CLK_2020 2845686 - 2844967 - | putative phospholipase C CLK_2021 2846907 - 2845708 - | hypothetical protein CLK_2022 2849492 - 2846946 - | putative calcium-translocating P-type ATPase, PMCA-type TERM 3953 2849778 - 2849739 - H 73 -8.8 -2.90615 | gap 1, opp_overlap 2849746, overlap 2849742 2849743 2849745 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAAAGGG TERM 3954 2849773 - 2849743 - H 79 -9.8 -2.75769 | opp_overlap 2849746, overlap 2849742 2849739 2849745 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 3955 2849746 - 2849770 + H 90 -10.1 -3.71552 | opp_overlap 2849745 2849743 2849742 2849739 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 3956 2849814 - 2849783 - H 95 -12.4 -3.62522 | overlap 2849791 2849802 GAATTCTGTTAATAA GCTTTAAAGGGAGT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA TERM 3957 2849806 - 2849791 - H 79 -9 -3.64049 | overlap 2849783 2849802 TTAATAAGCTTTAAA GGGAGT AAAA ACTCCC TCTGAAGCCAAGAAC TERM 3958 2849958 - 2849972 + H 70 -4.3 -4.91511 | TAAAATTTAGAAATT TGAAC TTAAT GTTCA TTTTTATGATAAAAT CLK_2023 2850037 - 2851680 + | putative manganese-dependent inorganic pyrophosphatase TERM 3959 2851831 - 2851774 - T 73 -7.6 -3.80697 | opp_overlap 2851779 2851783, overlap 2851752 2851751 2851779 2851783 ATCAAATTAATATAA TAAAATAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTATTTAA ATTAAAATACCTTTA TERM 3960 2851826 - 2851779 - T 86 -7.5 -4.91285 | opp_overlap 2851779 2851783, overlap 2851774 2851783 ATTAATATAATAAAA TAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTA TTTAAATTAAAATAC TERM 3961 2851779 - 2851826 + T 84 -9.7 -3.76125 | opp_overlap 2851779 2851774 2851783, overlap 2851783 ATTAATATAATAAAA TAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTA TTTAAATTAAAATAC TERM 3962 2851783 - 2851822 + T 72 -6.1 -4.50159 | opp_overlap 2851783 2851779 2851774, overlap 2851779 ATATAATAAAATAAA TAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTA TTTATTTAAATTAAA TERM 3963 2851833 - 2851852 + T 77 -5.2 -5.43866 | opp_overlap 2851833 AGCTATTTATTTAAA TTAAAATA CCTT TATTTTAA TTTTTTTACAGATTA CLK_2024 2852474 - 2851896 - | hypothetical protein TERM 3964 2852736 - 2852687 - R 75 -8.4 -3.61178 | gap 1, opp_overlap 2852687 2852694, overlap 2852694 CCCATTTATTCCAAA TAA-AAAACTATGAAATAAAAGA ATTTA TCTTGTACTTCATAGTTTTCTTA TTTTAAATTAAATTT TERM 3965 2852687 - 2852736 + r 70 -6.2 -4.30448 | gap 1, opp_overlap 2852687 2852694, overlap 2852694 CCCATTTATTCCAAA TAA-AAAACTATGAAATAAAAGA ATTTA TCTTGTACTTCATAGTTTTCTTA TTTTAAATTAAATTT TERM 3966 2852728 - 2852694 - R 100 -8.1 -5.64421 | opp_overlap 2852687 2852694, overlap 2852687 ATTCCAAATAAAAAA CTATGAAATAAAAGA ATTTA TCTTGTACTTCATAG TTTTCTTATTTTAAA TERM 3967 2852694 - 2852728 + r 80 -5.9 -5.093 | opp_overlap 2852694 2852687, overlap 2852687 ATTCCAAATAAAAAA CTATGAAATAAAAGA ATTTA TCTTGTACTTCATAG TTTTCTTATTTTAAA CLK_2025 2853625 - 2852834 - | flagellar basal body rod protein TERM 3968 2852897 - 2852919 + g 77 -8.6 -3.67102 | opp_overlap 2852900, overlap 2852886 2852891 2852900 TATACCTCTTGAACT TAATTCAAAG GCT CTTTGAGTTA TTATCATTTCTGTCA CLK_2026 2854446 - 2853679 - | flagellar basal body rod protein TERM 3969 2853805 - 2853826 + g 71 -4.5 -4.7219 | overlap 2853807 TTCATTAGTTACATT TACATTAGA TTTT TCTAATGAA TTTTGTCTTACTATA CLK_2027 2854628 - 2854512 - | hypothetical protein CLK_2028 2855344 - 2854706 - | hypothetical protein TERM 3970 2854979 - 2854994 + g 75 -4.8 -5.03945 | overlap 2854989 CATTATTTTTTTATT TATTTC CTTG GAAATA TTTTTCTCGTTCTTG fliA 2856101 - 2855373 - | RNA polymerase sigma factor for flagellar operon FliA TERM 3971 2855828 - 2855850 + g 79 -7.7 -4.35604 | TATTTAATTTGTCCA TAGCCCCTT TGGAT ATGGGGCTA TTTCTTCTCAATTCG CLK_2030 2856774 - 2856115 - | hypothetical protein flhG 2857649 - 2856789 - | flagellar biosynthesis protein FlhG flhF 2858869 - 2857643 - | flagellar biosynthesis protein FlhF TERM 3972 2858760 - 2858744 - G 88 -8.7 -4.38154 | opp_overlap 2858743 2858744 2858746 AGATTTTTTAGAAAA GAGGCCT AAA AAGCCTC CCTTTCTTATTTTTC flhA 2860932 - 2858866 - | flagellar biosynthesis protein FlhA TERM 3973 2859455 - 2859466 + g 83 -3 -5.72254 | overlap 2859444 TGTCTTCCTAAAAGT TCAT AGGA ATGA TTTTTTATTATTTCA TERM 3974 2859524 - 2859498 - G 71 -8.8 -2.83273 | opp_overlap 2859503, overlap 2859501 TTAAATGAGTAACCA TAACTGTAGTAG GAT CTACCACTGTTA AACCTTTAAGTTCTG TERM 3975 2859782 - 2859794 + g 70 -6.3 -4.08557 | TCAATAGCACATTGT CTTCT TAC AGAAG TTATTCTTTGAAGAA TERM 3976 2860005 - 2859995 - G 72 -6.8 -4.13571 | opp_overlap 2859994, overlap 2859990 2859996 2859998 TTAAATAAAAGATAA GCAG CTA CTGC ATTAGCTATAGCCAA TERM 3977 2860209 - 2860194 - G 74 -6.1 -4.39166 | CTGTAGATATTAAAA GGGCA GGTATT TGCCC TACCAATCCATCCCC CLK_2034 2862789 - 2860960 - | flagellar biosynthetic protein FliR/FlhB TERM 3978 2861064 - 2861077 + g 76 -6.7 -4.44211 | opp_overlap 2861061 2861064, overlap 2861061 CCTTTTCATATATTA GCCTT GCTA AAGGC TTGTTTTCTATTACA fliQ 2863092 - 2862823 - | flagellar biosynthesis protein FliQ fliP 2863880 - 2863104 - | flagellar biosynthetic protein FliP CLK_2037 2864271 - 2863864 - | flagellar biosynthesis domain-containing protein fliL 2864865 - 2864344 - | flagellar basal body-associated protein FliL motB 2865605 - 2864862 - | chemotaxis motB protein motA 2866410 - 2865598 - | chemotaxis MotA protein CLK_2041 2866616 - 2866407 - | flagellar protein FlbD TERM 3979 2866433 - 2866455 + g 70 -5.6 -4.24654 | opp_overlap 2866438, overlap 2866438 ACTCCCCCTGTATGC CTAAAGTGAT TAT GTCACTTTTG TATTTTTTAACTTTT TERM 3980 2866438 - 2866450 + g 72 -4.1 -5.06052 | opp_overlap 2866438, overlap 2866433 CCCTGTATGCCTAAA GTGAT TAT GTCAC TTTTGTATTTTTTAA TERM 3981 2866770 - 2866810 + r 100 -17.4 -5.28414 | opp_overlap 2866773 2866778 AAATTTTTTTATATT TAATGTAATAGTTAATAG ATAAA CTATTAACTATTACATTA TTTTTATGTTTATTA TERM 3982 2866807 - 2866773 - R 100 -14.7 -3.12351 | opp_overlap 2866770, overlap 2866778 TTTTTTTATATTTAA TGTAATAGTTAATAG ATAAA CTATTAACTATTACA TTATTTTTATGTTTA TERM 3983 2866802 - 2866778 - R 75 -8.8 -3.20164 | opp_overlap 2866770, overlap 2866773 TTATATTTAATGTAA TAGTTAATAG ATAAA CTATTAACTA TTACATTATTTTTAT flgE 2867887 - 2866850 - | flagellar hook protein flgE CLK_2043 2868388 - 2867969 - | flagellar operon protein TERM 3984 2868120 - 2868133 + g 70 -5.3 -4.61852 | CTTCCCTTCTTATCG GCTAT ATTT ATAGC TTTATTTATACTATT flgD 2869200 - 2868403 - | flagellar hook capping protein fliK 2870618 - 2869230 - | flagellar hook-length control protein TERM 3985 2870022 - 2870034 + g 75 -4.9 -5.03994 | AGTTTCTAACAAATC TTCAT CTA ATGAA TTTTTATCTGTAAGA CLK_2046 2871061 - 2870624 - | flagellar protein FliJ fliI 2872483 - 2871167 - | flagellar protein export ATPase FliI fliH 2873311 - 2872523 - | flagellar assembly protein FliH TERM 3986 2872902 - 2872921 + g 83 -8 -4.60924 | TATTGTGCTTCAGTA TCTAACAA TAAT TTGTTAGA TTTTTGCACCATTTC fliG 2874308 - 2873295 - | flagellar motor switch protein fliG TERM 3987 2873877 - 2873855 - G 70 -8.4 -3.17714 | opp_overlap 2873848 2873855 GCAAATCTTCAGGAA GGGAGGACAA TAT TTGCCCTGCC TTATCTGATTGCATA fliF 2875895 - 2874315 - | flagellar M-ring protein fliF fliE 2876225 - 2875911 - | flagellar hook-basal body complex protein FliE flgB 2877169 - 2876768 - | flagellar basal-body rod protein FlgB TERM 3988 2877734 - 2877705 - R 82 -8.1 -4.46835 | opp_overlap 2877701 2877704 2877705, overlap 2877701 ATAAGCTCAAATAAA GCATCTTTAAT TTATCTTT ATTAAAGATGC AATTTTGTTATTTAG CLK_2055 2878596 - 2877742 - | flagellin CLK_2056 2879109 - 2878741 - | hypothetical protein TERM 3989 2878886 - 2878898 + g 78 -4.1 -5.44721 | ATATTTAGGCTATTT TGGAG GTC CTTCA TTTTTTTCCCATACT TERM 3990 2879217 - 2879198 - R 78 -8.6 -3.89336 | overlap 2879192 2879214 TTAATCAAAGCCAAA GTCCTTGC TAAA GCAAGAAC CCTGCTCATACAAAA argH 2880971 - 2879649 - | argininosuccinate lyase TERM 3991 2879877 - 2879891 + g 72 -4.2 -5.03747 | overlap 2879866 ATCCGCTGCTTCTGT GGCATT TAA AAAGCC TTTTTTCACAGATTT argG 2882186 - 2880993 - | argininosuccinate synthase TERM 3992 2882251 - 2882283 + r 72 -7.9 -3.48091 | opp_overlap 2882261, overlap 2882251 2882253 CCAGTTTCATTTTTA TAGGAATCAATTTTC CTA GAAAATTTATTCCTC ATTTGTTTTATAATT TERM 3993 2882251 - 2882284 + r 76 -6.3 -4.82863 | gap 1, opp_overlap 2882261, overlap 2882251 2882253 CCAGTTTCATTTTTA T-AGGAATCAATTTTC CTA GAAAATTTATTCCTCA TTTGTTTTATAATTA TERM 3994 2882253 - 2882281 + r 87 -10.5 -3.28878 | opp_overlap 2882261, overlap 2882251 2882251 AGTTTCATTTTTATA GGAATCAATTTTC CTA GAAAATTTATTCC TCATTTGTTTTATAA TERM 3995 2882398 - 2882374 - R 100 -11.6 -4.38141 | opp_overlap 2882371, overlap 2882371 TTTTACATAAAATAA GCCATTTATC ACAAG GATAAATGGC AAATATAGTAATATT TERM 3996 2882446 - 2882478 + r 95 -12.2 -3.55548 | opp_overlap 2882446, overlap 2882449 TAATTATGCACAAAA TAAGCTCTGTTACA TAAAT TGTAACAGAGCCTA TTTACCAAACTATTC TERM 3997 2882478 - 2882446 - R 100 -14.4 -4.44915 | opp_overlap 2882446 2882449 TAATTATGCACAAAA TAAGCTCTGTTACA TAAAT TGTAACAGAGCCTA TTTACCAAACTATTC TERM 3998 2882449 - 2882475 + r 100 -13.9 -2.60813 | opp_overlap 2882446, overlap 2882446 TTATGCACAAAATAA GCTCTGTTACA TAAAT TGTAACAGAGC CTATTTACCAAACTA CLK_2059 2882818 - 2882480 - | hypothetical protein TERM 3999 2882726 - 2882745 + g 76 -3.6 -5.41941 | overlap 2882728 TACTCTTTTCTTTAA TTCTTTGT CAGT ACAAAGTA TTTTTATTTCATTTA TERM 4000 2882728 - 2882743 + g 72 -6.2 -4.30791 | overlap 2882726 CTCTTTTCTTTAATT CTTTGT CAGT ACAAAG TATTTTTATTTCATT CLK_2060 2883161 - 2882841 - | hypothetical protein cls 2884795 - 2883365 - | cardiolipin synthetase TERM 4001 2885164 - 2885153 - g 71 -5.8 -4.4261 | opp_overlap 2885153 TGCGTAACATTAAAA CTGC CCTA GCAG TTACTCTTGCTATAT TERM 4002 2885217 - 2885232 + G 73 -9 -3.08294 | overlap 2885216 AGATTCTCCTTTTTA TGCAGC CATT GCTGCA GTTATTTCTATGCAA TERM 4003 2885657 - 2885636 - g 85 -6 -5.49569 | TACCAACAGAAAAAA TCTACTTT CATCAT AAAGTAGA TATAAAAAAGCTTAA TERM 4004 2885863 - 2885847 - g 71 -2.3 -5.38549 | opp_overlap 2885847 2885855, overlap 2885850 2885855 GTTAAATAACAAAAA TTATGAA AGA TTCAAAA ATTTGTATCATTTGC CLK_2062 2885122 - 2886012 + | hypothetical protein TERM 4005 2886022 - 2886080 + T 73 -8.7 -2.8169 | opp_overlap 2886023 2886029 2886033 2886036, overlap 2886029 2886033 2886069 CCTTAAAGTTTAGTA ATTAAAATAAATAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTGTTTATTTTAAG CTCTTTTGAAATTAT TERM 4006 2886079 - 2886023 - T 100 -14.4 -3.2048 | opp_overlap 2886022 2886029 2886033 2886069, overlap 2886029 2886033 2886036 CTTAAAGTTTAGTAA TTAAAATAAATAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTGTTTATTTTAA GCTCTTTTGAAATTA TERM 4007 2886073 - 2886029 - T 86 -9 -4.45544 | opp_overlap 2886029 2886022 2886033 2886069, overlap 2886023 2886033 2886036 GTTTAGTAATTAAAA TAAATAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTGTTTA TTTTAAGCTCTTTTG TERM 4008 2886029 - 2886073 + T 73 -6.8 -4.23434 | opp_overlap 2886023 2886029 2886033 2886036, overlap 2886022 2886033 2886069 GTTTAGTAATTAAAA TAAATAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTGTTTA TTTTAAGCTCTTTTG TERM 4009 2886069 - 2886033 - T 73 -5.4 -4.78981 | opp_overlap 2886033 2886029 2886022, overlap 2886029 2886023 2886036 AGTAATTAAAATAAA TAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTG TTTATTTTAAGCTCT TERM 4010 2886066 - 2886036 - T 77 -7.1 -4.47163 | opp_overlap 2886033 2886029 2886022, overlap 2886033 2886029 2886023 AATTAAAATAAATAA GTACTTTTAATCA ATAAA TAACTAAAAGTAC TTGTTTATTTTAAGC CLK_2063 2886317 - 2886132 - | hypothetical protein TERM 4011 2886592 - 2886567 - R 80 -6.9 -5.00027 | AGTAAAAATATAAAA GAGAACCGCCA TTTT TAACGATTCTC TTTATATGTATTCCT CLK_2064 2887049 - 2886594 - | VanZ family protein CLK_2065 2888725 - 2887295 - | polysaccharide biosynthesis protein CLK_2066 2889682 - 2888765 - | NAD-dependent epimerase/dehydratase family protein TERM 4012 2889509 - 2889533 + g 75 -7.3 -4.16301 | opp_overlap 2889514 2889516, overlap 2889510 2889512 TTTTTTAAATATGTT AGATATATTAG AAT CTAATATATCA TTTATATATAATCTA TERM 4013 2889510 - 2889532 + g 85 -10.8 -3.09058 | opp_overlap 2889514 2889516, overlap 2889509 2889512 TTTTTAAATATGTTA GATATATTAG AAT CTAATATATC ATTTATATATAATCT CLK_2067 2890778 - 2889711 - | neuB family protein CLK_2068 2892472 - 2890811 - | cytidyltransferase-like protein TERM 4014 2892327 - 2892343 + g 74 -2.3 -5.65513 | opp_overlap 2892325 2892327 2892330 2892334 2892337, overlap 2892330 2892332 2892337 GTAGTTATTAATATA TAATCTA TAA TAGATGA TTTTTTTAATTCATC TERM 4015 2892433 - 2892453 + g 85 -2.6 -5.97979 | CTTTTGATCCTCCTC TAGCTG GGATGCATA CAGCTA TTTTTTTATTGTTAT CLK_2069 2893656 - 2892487 - | hypothetical protein TERM 4016 2893156 - 2893168 + g 70 -3.5 -5.02074 | GGATAATACCTCTCC TAAAT AAA ATTTA TTTTTTGCACAATAC CLK_2070 2894643 - 2893690 - | exopolysaccharide biosynthesis protein CLK_2071 2895440 - 2894670 - | exopolysaccharide biosynthesis protein glf 2896540 - 2895440 - | UDP-galactopyranose mutase CLK_2073 2897322 - 2896645 - | putative undecaprenyl-phosphate galactosephosphotransferase CLK_2074 2898237 - 2897542 - | capsular exopolysaccharide family protein TERM 4017 2898131 - 2898150 + g 74 -8 -3.73512 | AAAATTACACTTATT TTTTCATC AAAG GATGAAAA TTGTATATTAGTTCT CLK_2075 2899029 - 2898256 - | exopolysaccharide biosynthesis protein CLK_2076 2899722 - 2899045 - | capsular polysaccharide biosynthsis protein CLK_2077 2900719 - 2899757 - | cell envelope-related function transcriptional attenuator TERM 4018 2900546 - 2900531 - G 72 -2.6 -5.38497 | ATCCAAACCAAAAAA TGCTAT ATTT ATAACA TCATCTCCATATAAC TERM 4019 2901162 - 2901121 - R 76 -2.6 -5.95946 | gap 2, opp_overlap 2901148 TTAAGAACAAAAAAA TTCTAAGCTTTTCTTGAAGT ACAA ACCTCTA-AAA-GCTTAGAA TTTTTTTATTAAACT CLK_2078 2901356 - 2901180 - | hypothetical protein CLK_2079 2901658 - 2901485 - | hypothetical protein CLK_2080 2901946 - 2901779 - | hypothetical protein TERM 4020 2901914 - 2901931 + g 77 -7.1 -4.21465 | CTGTCTTAATTGACT CATTTGT TTAA ACAAATG TTCTTTAGTTTTCAA TERM 4021 2902276 - 2902240 - R 84 -4.7 -5.64421 | gap 1, opp_overlap 2902240 ATTTCAAATAAAAAA GCGATGAAATATAAGA TTATCC TCTTA-ATTTCATAGC TTATATCTATATTAT TERM 4022 2902362 - 2902328 - R 70 -4.6 -5.09204 | opp_overlap 2902339, overlap 2902316 2902306 2902339 2902353 ATATTTTAAGAAAAA TTCATAAAAAATTTAT AAA ATAAACTTTTTCTAAA ACCCTATGCTACATA TERM 4023 2902351 - 2902339 - R 70 -3.5 -5.35222 | opp_overlap 2902339, overlap 2902306 2902328 AAAATTCATAAAAAA TTTAT AAA ATAAA CTTTTTCTAAAACCC TERM 4024 2902414 - 2902389 - R 72 -8.3 -3.1984 | opp_overlap 2902387 2902389, overlap 2902387 2902385 CATAACATTAAGATA GTCCCCAACTA TTAT TAAGTGGGGAC TTTGTTATAATCTTT TERM 4025 2902389 - 2902414 + r 72 -6.1 -4.40181 | opp_overlap 2902389 2902387 2902385, overlap 2902387 CATAACATTAAGATA GTCCCCAACTA TTAT TAAGTGGGGAC TTTGTTATAATCTTT CLK_2081 2903277 - 2902429 - | methyl-accepting chemotaxis protein TERM 4026 2902693 - 2902711 + g 73 -8.9 -3.10715 | overlap 2902686 GGATTCCCCTGCTCT TGCAGCT TCTAT AGCTGCA TTAAGTCCTAATAAA TERM 4027 2903314 - 2903324 + r 70 -4 -5.1764 | TTAGGTTTGTTTTTT TACT AAT AGTA TTTTTGTGTTCTGTA fliC 2904172 - 2903354 - | flagellin TERM 4028 2903474 - 2903460 - G 71 -7.2 -3.72576 | TTTCCCTTTATTAAA TTCATC ATA GATGAA GCCATATCAGAATCC CLK_2083 2904860 - 2904357 - | hypothetical protein TERM 4029 2904764 - 2904774 + g 78 -4 -5.47159 | TTATATATTTTATGT CTTT TCT AAAG TTTTTTATGTTAAAA CLK_2084 2906415 - 2904946 - | hypothetical protein TERM 4030 2905505 - 2905523 + g 74 -9 -3.29187 | overlap 2905508 TCATAGTCAAAACTG TAATAGGA CAA TCCTATTA TTACATATTTTAGAT CLK_2085 2907649 - 2906639 - | glycosyl transferase-like protein TERM 4031 2907591 - 2907550 - G 85 -5.9 -5.4492 | opp_overlap 2907553 2907555, overlap 2907551 2907552 TACATATATAAAAAA CCTCATTGGCTTTTGCTAA TTCT TTAGCTAAAGCCAATGTTC TCATAATGTGCCCCA TERM 4032 2907590 - 2907551 - G 84 -9.4 -3.85325 | opp_overlap 2907553 2907555, overlap 2907550 2907552 ACATATATAAAAAAC CTCATTGGCTTTTGCTAA TTCT TTAGCTAAAGCCAATGTT CTCATAATGTGCCCC TERM 4033 2907589 - 2907552 - G 100 -12.9 -2.89568 | opp_overlap 2907553 2907555, overlap 2907551 2907550 CATATATAAAAAACC TCATTGGCTTTTGCTAA TTCT TTAGCTAAAGCCAATGT TCTCATAATGTGCCC TERM 4034 2907553 - 2907588 + g 100 -16.4 -3.45849 | opp_overlap 2907552 2907551 2907550, overlap 2907555 ATATATAAAAAACCT CATTGGCTTTTGCTAA TTCT TTAGCTAAAGCCAATG TTCTCATAATGTGCC TERM 4035 2907869 - 2907835 - R 100 -8.7 -5.20783 | opp_overlap 2907838, overlap 2907838 ATTTAAACATAAAAA TAAGCACCAACAGCT TTTTT AGCTATTGATGCTTC TAATCTAATTTTTGA TERM 4036 2907866 - 2907838 - R 100 -10.4 -4.67478 | opp_overlap 2907838, overlap 2907835 TAAACATAAAAATAA GCACCAACAGCT TTTTT AGCTATTGATGC TTCTAATCTAATTTT CLK_2086 2909147 - 2908143 - | GDSL family lipase/acylhydrolase TERM 4037 2908542 - 2908587 + g 93 -8.1 -5.04597 | opp_overlap 2908546 2908576, overlap 2908576 AAATTCATACGCCAT TAAAGATTTTTCTTTTAAA TTATTTTT TTTAAAATAAAAATCTTTA TTTTTATCTATAGAT CLK_2087 2910333 - 2909236 - | hypothetical protein CLK_2088 2911528 - 2910353 - | glycosyl transferase, group 2 family protein CLK_2089 2912734 - 2911556 - | glycosyl transferase, group 1 family protein TERM 4038 2912838 - 2912820 - R 100 -8.2 -5.42198 | CTTTAAAAAACAAAA GCATCTAC TAA ATAGATGC TAAATATTATCAAAC CLK_2090 2913365 - 2912838 - | hypothetical protein TERM 4039 2912991 - 2912979 - G 75 -4.9 -5.01553 | opp_overlap 2912979 AATCCACAAAGAAAA GAAAT TTA ATTTC TTATTTATGGTTTCT CLK_2091 2914592 - 2913372 - | glycosyl transferase, group 1 family protein TERM 4040 2914161 - 2914131 - G 72 -2.8 -5.40072 | opp_overlap 2914135 2914137, overlap 2914135 TCTTTCCCAAAAAAA TATATATAAATAAA ATA TATATTTATTTATA CTTCTTCTATCTTTA TERM 4041 2914358 - 2914371 + g 70 -3.9 -5.0916 | opp_overlap 2914358 TATCATAGGAAAATC TTTCA TATA TGAAA TTTTTATATTCAAAA CLK_2092 2915955 - 2914618 - | hypothetical protein TERM 4042 2915197 - 2915209 + g 91 -4.8 -5.87688 | opp_overlap 2915197 2915195 CCATCTGAAATAATA GGTG GAATA CACC TTTTTTTTACATTCT TERM 4043 2915476 - 2915486 + g 78 -4 -5.3798 | overlap 2915470 TTTATTTAGTATACC TCTA GTA TAGA TTTTTCTTATTATTG CLK_2093 2917424 - 2915991 - | hypothetical protein CLK_2094 2918750 - 2917437 - | CoA-binding domain-containing protein CLK_2095 2919766 - 2918771 - | methyltransferase domain-containing protein TERM 4044 2919160 - 2919170 + g 74 -5.4 -4.92314 | ATTGATTCCAATATT TGCA TTC TGCA TTTTTATCAATTGCT TERM 4045 2919431 - 2919453 + g 86 -7.2 -5.24796 | opp_overlap 2919431 TATGGGTTCCATAAA TATATAATCT TTA GGATTATATA TTTTTATTATATGAA CLK_2096 2921495 - 2919780 - | glycerophosphotransferase TERM 4046 2920532 - 2920545 + g 90 -3.9 -6.25578 | ACCCATGTTGAACTG CATAA GTTT TTATG TTTTTTTTATTTCCT CLK_2097 2922624 - 2921521 - | spore coat polysaccharide biosynthesis protein SpsC CLK_2098 2923743 - 2922751 - | UDP-glucose 4-epimerase CLK_2099 2924799 - 2923849 - | methionyl-tRNA formyltransferase CLK_2100 2925968 - 2924820 - | UDP-N-acetylglucosamine 2-epimerase TERM 4047 2924926 - 2924942 + g 85 -5.9 -5.34555 | overlap 2924939 ACATTTTCAATTTCT TTTAGGG TTT CCTTAAA TTTTTTATCATATAA CLK_2101 2927002 - 2925977 - | spore coat polysaccharide biosynthesis protein SpsE TERM 4048 2926823 - 2926835 + g 82 -4.1 -5.5112 | TTCCTTTTGATATTC TGCTT TTG GAGCA TTTTTTGTTACTAAA CLK_2102 2927693 - 2926995 - | N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) TERM 4049 2927592 - 2927631 + g 91 -4.4 -6.06723 | opp_overlap 2927599 2927603, overlap 2927598 2927599 TGTAGCCTCTTTTAT AGTATAAGAAATCAATGG ATTA CCATTGATTTCCTTTATG TTTTTTTTTGAAACC TERM 4050 2927598 - 2927625 + g 100 -10 -4.80846 | opp_overlap 2927599 2927603, overlap 2927592 2927599 CTCTTTTATAGTATA AGAAATCAATGG ATTA CCATTGATTTCC TTTATGTTTTTTTTT TERM 4051 2927624 - 2927599 - G 100 -13.5 -3.46602 | opp_overlap 2927599 2927598 2927592, overlap 2927603 TCTTTTATAGTATAA GAAATCAATGG ATTA CCATTGATTTC CTTTATGTTTTTTTT TERM 4052 2927599 - 2927624 + g 100 -13.5 -3.43017 | opp_overlap 2927599 2927603, overlap 2927598 2927592 TCTTTTATAGTATAA GAAATCAATGG ATTA CCATTGATTTC CTTTATGTTTTTTTT TERM 4053 2927620 - 2927603 - G 85 -8.5 -4.3767 | opp_overlap 2927599 2927598 2927592, overlap 2927599 TTATAGTATAAGAAA TCAATGG ATTA CCATTGA TTTCCTTTATGTTTT CLK_2103 2928719 - 2927709 - | putative molybdopterin cofactor synthesis protein A CLK_2104 2929837 - 2928785 - | nucleotidyl transferase TERM 4054 2929550 - 2929568 + g 78 -3.1 -5.59534 | ATTCTCATCTACTAT TGGCAAA TCCTT TATGCCA TTTTTTATTATAATT CLK_2105 2930962 - 2929910 - | sialic acid synthase TERM 4055 2931090 - 2931042 - R 88 -12.4 -2.70932 | gap 1, opp_overlap 2931040 2931046, overlap 2931046 2931067 TTTTTTTCTTAATTA TAAACACTAACATAAAAAA-ATT AAAT AATATTTTTTATATTAGTGTTTA AATTGCATATTTCTT TERM 4056 2931086 - 2931046 - R 82 -8.8 -4.05446 | gap 1, opp_overlap 2931040 2931046, overlap 2931042 2931067 TTTCTTAATTATAAA CACTAACATAAAAAA-ATT AAAT AATATTTTTTATATTAGTG TTTAAATTGCATATT CLK_2106 2931859 - 2931104 - | polysaccharide biosynthesis protein TERM 4057 2931951 - 2931939 - R 86 -5.5 -5.8096 | opp_overlap 2931939 TAGAAAAAAGAAAAA GGCCT AGA AAGCC TTATTTAACTATTTT CLK_2107 2932658 - 2931972 - | HAD family hydrolase CLK_2108 2933729 - 2932701 - | hypothetical protein TERM 4058 2933815 - 2933791 - R 75 -8 -3.84648 | opp_overlap 2933793 GCTAATATTAGTAAA GAGTATACTT TTTAG AAGCATACTC TAATAAATAAACCAC CLK_2109 2935014 - 2933950 - | NAD-dependent epimerase/dehydratase family protein CLK_2110 2936159 - 2935134 - | exopolysaccharide biosynthesis protein CLK_2111 2937621 - 2936200 - | glycosyl transferase, group 2 family protein TERM 4059 2937572 - 2937554 - G 100 -9.6 -4.57482 | opp_overlap 2937554 TCATCTACAAATAAA GCTGCCTT TTC AAGACAGC TTTTTAAATTTTTTT TERM 4060 2937554 - 2937572 + g 85 -7.4 -4.97888 | opp_overlap 2937554 TCATCTACAAATAAA GCTGCCTT TTC AAGACAGC TTTTTAAATTTTTTT CLK_2112 2937977 - 2937630 - | hypothetical protein CLK_2113 2939684 - 2937981 - | hypothetical protein CLK_2114 2941628 - 2939709 - | glycosyl transferase, group 2 family protein TERM 4061 2941765 - 2941713 - R 100 -21.9 -3.51545 | opp_overlap 2941720 2941722 2941727, overlap 2941707 2941720 TAAAATAACTTATAA TATAAAAGACAAGAGACTTTACATA ATT TATGTAAAGTCTTTTGCCTTTTATA AATGATTCTGCAGGT TERM 4062 2941720 - 2941758 + r 100 -15.6 -4.44915 | opp_overlap 2941713 2941720, overlap 2941722 2941727 ACTTATAATATAAAA GACAAGAGACTTTACATA ATT TATGTAAAGTCTTTTGCC TTTTATAAATGATTC TERM 4063 2941758 - 2941720 - R 100 -15.6 -4.74285 | opp_overlap 2941720 2941722 2941727, overlap 2941713 ACTTATAATATAAAA GACAAGAGACTTTACATA ATT TATGTAAAGTCTTTTGCC TTTTATAAATGATTC TERM 4064 2941722 - 2941756 + r 100 -16.8 -2.55012 | opp_overlap 2941720 2941713, overlap 2941720 2941727 TTATAATATAAAAGA CAAGAGACTTTACATA ATT TATGTAAAGTCTTTTG CCTTTTATAAATGAT TERM 4065 2941727 - 2941751 + r 100 -13.1 -4.4595 | opp_overlap 2941720 2941713, overlap 2941722 2941720 ATATAAAAGACAAGA GACTTTACATA ATT TATGTAAAGTC TTTTGCCTTTTATAA TERM 4066 2941858 - 2941846 - R 70 -4.1 -5.10601 | overlap 2941850 ACAAAATCACAAAAA GAAAC TCC GTCTC CTTACGTCAACGGAG CLK_2115 2942751 - 2941912 - | flagellin TERM 4067 2942649 - 2942664 + g 78 -6.2 -4.69027 | CTGCTCTGTTTATTC TTAAGC CTGA GCTTAA TTTTTCAATCGCTTT CLK_2116 2943805 - 2942966 - | flagellin TERM 4068 2943824 - 2943854 + r 73 -2.7 -5.76237 | gap 1, overlap 2943828 2943831 ATATTCCTCCCTGTT TTTGTGG-TGAACA TCCT TGTTCATCCATTAA TTTTTTATTTATCTA CLK_2117 2944296 - 2943955 - | hypothetical protein fliD 2946758 - 2944323 - | flagellar hook-associated protein 2 TERM 4069 2946180 - 2946190 + g 70 -4 -4.98857 | opp_overlap 2946180 ATCATCGATTTTAAA TAGA TTT TCTA TTTTTATACTTCCAT fliS 2947201 - 2946812 - | flagellar protein FliS TERM 4070 2946918 - 2946931 + g 72 -5.3 -4.75472 | ACATCTTTTTTCATA TTAGC TTCT GCTAA TTTTCTTACTATGAA TERM 4071 2947156 - 2947166 + g 70 -4 -4.91459 | opp_overlap 2947156 CCTTTGAAGCAAAAT TAAC ACT GTTA TTTTTATAAGTATTG CLK_2120 2947537 - 2947238 - | hypothetical protein CLK_2121 2947950 - 2947594 - | flagellar protein FlaG csrA 2948184 - 2947966 - | carbon storage regulator TERM 4072 2948031 - 2948049 + g 71 -4.6 -4.76075 | TTTTATTTTCCTCTT GAACTTCA TTA TAAAGTTC TTTTCTTAGTATAGT CLK_2123 2948615 - 2948184 - | hypothetical protein flgL 2949645 - 2948683 - | flagellar hook-associated protein 3 flgK 2951528 - 2949663 - | flagellar hook-associated protein FlgK TERM 4073 2950298 - 2950285 - G 74 -5.3 -4.99035 | opp_overlap 2950285 2950283 GCATTTACAGAAAAA GCTAA AGCT TTAGC TAATTTATTTAACTG TERM 4074 2950627 - 2950640 + g 81 -3.8 -5.63374 | GTTACTGTATATTCA CCAG CTTCTC CTGG TTTTTTTCCTGTTGG TERM 4075 2951781 - 2951792 + r 71 -5.8 -4.69326 | opp_overlap 2951773 2951781, overlap 2951773 2951772 GCAGAGACTATATAA GGCT ATAT AGCC TTTTGTCTTGCCTGT CLK_2126 2952213 - 2951809 - | flgN family protein TERM 4076 2952145 - 2952176 + g 71 -4.6 -4.70107 | CTTATGTTGATCATC TAGAAGGCTTAAAA GTTC TTTTAATACTTCTA TTTCTTCTTTTAATG CLK_2127 2952494 - 2952213 - | regulator of flagellin synthesis FlgM TERM 4077 2952859 - 2952908 + r 100 -17.9 -4.28656 | gap 1, opp_overlap 2952859 2952865, overlap 2952865 ATTTTCTTTTTAAAA TTAAAAGCTATGAA-TTTAAAATA TTA TATTTTAAAATTCATAGCTTTTAA TTTTAACTATTAAAT TERM 4078 2952908 - 2952859 - R 100 -17.9 -4.07687 | gap 1, opp_overlap 2952859 2952865, overlap 2952865 ATTTTCTTTTTAAAA TTAAAAGCTATGAA-TTTAAAATA TTA TATTTTAAAATTCATAGCTTTTAA TTTTAACTATTAAAT TERM 4079 2952865 - 2952902 + r 100 -12.5 -4.68645 | gap 1, opp_overlap 2952859 2952865, overlap 2952859 TTTTTAAAATTAAAA GCTATGAA-TTTAAAATA TTA TATTTTAAAATTCATAGC TTTTAATTTTAACTA TERM 4080 2952902 - 2952865 - R 100 -12.5 -4.67038 | gap 1, opp_overlap 2952865 2952859, overlap 2952859 TTTTTAAAATTAAAA GCTATGAA-TTTAAAATA TTA TATTTTAAAATTCATAGC TTTTAATTTTAACTA fliN 2954244 - 2953084 - | flagellar motor switch protein FliN TERM 4081 2953930 - 2953944 + g 77 -7.2 -4.2349 | opp_overlap 2953912 TAGGTTTTCTCCTAC TATACC ACT GGTATA TTTTACCTCTAAGGC fliM 2955232 - 2954237 - | flagellar motor switch protein FliM CLK_2130 2955655 - 2955260 - | putative chemotaxis protein CheW TERM 4082 2955718 - 2955680 - R 71 -5.4 -4.64861 | overlap 2955681 TCCTCTCAAAATAAA CTATCAGTGCATTAAGAA ATT TGCCTAATGCACCTATAA GTTTTAAACTTTAAG cheY 2956114 - 2955755 - | chemotaxis protein CheY cheC 2956741 - 2956142 - | chemotaxis protein CheC cheA 2958842 - 2956767 - | chemotaxis protein CheA cheR 2959625 - 2958855 - | chemotaxis protein methyltransferase CheR TERM 4083 2958943 - 2958917 - G 75 -7.4 -4.1021 | CTTTATAATTATAAA TGCTTTCTGTAG CTC CTACAAAAAGTA AGCCCCCTTTTTTCA TERM 4084 2958953 - 2958971 + g 74 -6.1 -4.45484 | AAAGTAAGCCCCCTT TTTTCAG TGACT CTGAAAA TTTCTTATATATATT TERM 4085 2959359 - 2959375 + g 74 -2.3 -5.63504 | TTTTGATGAATTATT TAAGAGC TCT GTTTTTA TTTTTTTCTCCAATT cheB 2960704 - 2959640 - | protein-glutamate methylesterase CheB TERM 4086 2960189 - 2960213 + g 73 -3.7 -5.26918 | overlap 2960191 TCCTATGACTACAGC TTCTATTTTTT TTG AAGAAATAGTA TTTTTTATAGGGTAT TERM 4087 2960191 - 2960211 + g 72 -6.3 -4.26475 | overlap 2960189 CTATGACTACAGCTT CTATTTTTT TTG AAGAAATAG TATTTTTTATAGGGT cheD 2961215 - 2960727 - | chemotaxis protein CheD cheW 2961678 - 2961232 - | chemotaxis protein CheW CLK_2138 2963727 - 2961694 - | hypothetical protein CLK_2139 2965935 - 2963980 - | PTS system, glucose family, IIABC component TERM 4088 2965625 - 2965644 + g 95 -10.8 -3.97331 | GTCATATTCCTTTGG GCAGCTAT TTTT ATAGCTGC TTCTTTGGCTGCCTT TERM 4089 2965707 - 2965724 + g 81 -9.9 -3.46659 | opp_overlap 2965709 TTAATTGACCTACTA TAGCAGC TAAA GCTGCTA TTCCTTCTCCATCTG TERM 4090 2965967 - 2965998 + r 89 -9.6 -4.29493 | opp_overlap 2965975, overlap 2965968 2965975 TAAGCTTGCTTATAG TTTAAAAACCTTGC AAAA GCAAGGTTTTTTAG TTTATATATTTAATA TERM 4091 2965968 - 2965997 + r 90 -10.9 -3.16611 | opp_overlap 2965975, overlap 2965967 2965975 AAGCTTGCTTATAGT TTAAAAACCTTGC AAAA GCAAGGTTTTTTA GTTTATATATTTAAT TERM 4092 2965990 - 2965975 - R 89 -9 -4.64766 | opp_overlap 2965968 2965967 2965975 CTTATAGTTTAAAAA CCTTGC AAAA GCAAGG TTTTTTAGTTTATAT TERM 4093 2965975 - 2965990 + r 100 -9 -5.4387 | opp_overlap 2965975, overlap 2965968 2965967 CTTATAGTTTAAAAA CCTTGC AAAA GCAAGG TTTTTTAGTTTATAT CLK_2140 2966845 - 2966018 - | BglG family transcriptional antiterminator CLK_2141 2967927 - 2967094 - | putative branched-chain amino acid aminotransferase TERM 4094 2967842 - 2967859 + g 77 -7.1 -4.26903 | opp_overlap 2967837 2967842 ACTTCATAAAGAGAT TTTCCTT CTTT AAGGAAA TTTTCATCAAATAGA CLK_2142 2968695 - 2968054 - | HAD family hydrolase TERM 4095 2968945 - 2968912 - R 90 -11.9 -3.0352 | opp_overlap 2968917 2968942 2968943, overlap 2968917 TAAAATTAACCAAAG CAAAAGAGCCTCTGT AATA ACAGAGACTCTTTTT ACAATACTATTGTAG TERM 4096 2968940 - 2968917 - R 100 -11.8 -4.62054 | opp_overlap 2968917, overlap 2968912 TTAACCAAAGCAAAA GAGCCTCTGT AATA ACAGAGACTC TTTTTACAATACTAT TERM 4097 2968917 - 2968940 + r 93 -9.6 -4.63928 | opp_overlap 2968917 2968912 TTAACCAAAGCAAAA GAGCCTCTGT AATA ACAGAGACTC TTTTTACAATACTAT CLK_2143 2969353 - 2968952 - | hypothetical protein TERM 4098 2969380 - 2969359 - R 81 -7.3 -4.83615 | opp_overlap 2969360, overlap 2969360 CATCTTTCATAAAAA CTCCTGGTA ATAT TACCAGGAT CTTCACCTCCTTTTT TERM 4099 2969360 - 2969379 + r 85 -10.8 -3.09131 | opp_overlap 2969360 2969359 ATCTTTCATAAAAAC TCCTGGTA ATAT TACCAGGA TCTTCACCTCCTTTT TERM 4100 2969379 - 2969360 - R 91 -10.8 -3.49687 | opp_overlap 2969360, overlap 2969359 ATCTTTCATAAAAAC TCCTGGTA ATAT TACCAGGA TCTTCACCTCCTTTT TERM 4101 2969414 - 2969426 + r 72 -4.8 -5.01732 | TATGTTCTAATTGTA CCCT TAAAC AGGG TTTTTTAAAAGAGTT TERM 4102 2969581 - 2969541 - R 73 -5.8 -4.83169 | gap 1, opp_overlap 2969549, overlap 2969543 ATTTTGTGATAAAAA TATACCAAGTAAATGATTA TTAA TAACTATTTACTTGGTA-A TGAAATATTTTTATA TERM 4103 2969580 - 2969543 - R 100 -10.9 -4.03995 | opp_overlap 2969549, overlap 2969541 TTTGTGATAAAAATA TACCAAGTAAATGATTA TTAA TAACTATTTACTTGGTA ATGAAATATTTTTAT CLK_2144 2969730 - 2969614 - | hypothetical protein TERM 4104 2969968 - 2969998 + r 84 -9.3 -3.67134 | gap 1, opp_overlap 2969976, overlap 2969953 2969970 2969976 GCTCTTTATATTTAG TAA-AAAAAGAGCC TTTC GGCTCTTTTTATTA TTGTTCAGCTAATTT TERM 4105 2969970 - 2969995 + r 81 -9.1 -3.96068 | opp_overlap 2969976, overlap 2969953 2969968 2969976 TCTTTATATTTAGTA AAAAAAGAGCC TTTC GGCTCTTTTTA TTATTGTTCAGCTAA TERM 4106 2969976 - 2969989 + r 100 -8.1 -5.3798 | opp_overlap 2969976, overlap 2969953 2969970 2969968 TATTTAGTAAAAAAA GAGCC TTTC GGCTC TTTTTATTATTGTTC TERM 4107 2969989 - 2969976 - R 100 -8.1 -5.53991 | opp_overlap 2969953 2969976 2969970 2969968 TATTTAGTAAAAAAA GAGCC TTTC GGCTC TTTTTATTATTGTTC CLK_2145 2973574 - 2969996 - | pyruvate ferredoxin oxidoreductase TERM 4108 2973631 - 2973611 - R 74 -6.2 -4.57474 | TTAATTTATATAAAA TTTACGGA ATAAA TCCGCAAA ATAATTAACATTTGT murG 2975269 - 2974205 - | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase CLK_2147 2975593 - 2975757 + | hypothetical protein TERM 4109 2975858 - 2975820 - T 83 -7.1 -4.92757 | gap 2, opp_overlap 2975820 GCATTAACAATAAAA GCCCTATTTAATTGTAAAT TTT ATTTAC--CTAAATAGGGC TTTATGTATTTTCTA CLK_2148 2977979 - 2975871 - | sensory box histidine kinase TERM 4110 2976177 - 2976189 + g 73 -3.5 -5.186 | overlap 2976182 TTCATCTTTTACTAT TAATT TAA AATTA TTTTTATATATTTTA TERM 4111 2978401 - 2978377 - R 75 -3.7 -5.47218 | opp_overlap 2978383 CCTTACTGAAAAAAA TATAAATAGCT AAA AGTTACTTATA TGCCTGCAAGTTATA recJ 2980461 - 2978680 - | single-stranded-DNA-specific exonuclease RecJ CLK_2150 2980652 - 2981470 + | AP endonuclease TERM 4112 2981638 - 2981620 - T 72 -8.9 -2.52516 | overlap 2981619 GGCTTCACTACTAAC TCCTCAC GTTCT GTGAGGA ATTACAAAAATTTTT CLK_2151 2983152 - 2981758 - | NHL repeat-containing protein TERM 4113 2983309 - 2983356 + r 100 -19.4 -2.91912 | opp_overlap 2983321, overlap 2983321 TTTATCCGATGATTA CCCGCTCTAATACTCCCATCTT CTTA AAAATGGGAGTATTAGGGCGGC TATGTCCCTGGATAA TERM 4114 2983344 - 2983321 - R 85 -10.4 -3.02144 | opp_overlap 2983309 2983321 TTACCCGCTCTAATA CTCCCATCTT CTTA AAAATGGGAG TATTAGGGCGGCTAT TERM 4115 2983321 - 2983344 + r 71 -8.2 -3.02263 | opp_overlap 2983321, overlap 2983309 TTACCCGCTCTAATA CTCCCATCTT CTTA AAAATGGGAG TATTAGGGCGGCTAT TERM 4116 2983526 - 2983516 - R 70 -2.6 -5.5353 | GATAGTAACAAAAAA TTTT ATT AAAA GCACTAAATATATGC TERM 4117 2983717 - 2983684 - R 82 -9.2 -3.30651 | opp_overlap 2983694, overlap 2983682 2983692 2983694 2983706 TTTGATATTATAATA TATAAAAACACCTT AAAGAA AAGGTATTTTTATA TGAAATACCCCCATT TERM 4118 2983972 - 2983995 + r 75 -9.7 -2.62332 | opp_overlap 2983972, overlap 2983979 TATTATGAAAAAAAA CTACACTCT CTATAA AGAGTGTAG TAAATTAGTTAATTT TERM 4119 2983995 - 2983972 - R 100 -10.4 -5.88471 | opp_overlap 2983972 2983979 TATTATGAAAAAAAA CTACACTCTC TATA AAGAGTGTAG TAAATTAGTTAATTT CLK_2152 2985375 - 2984158 - | M16 family peptidase TERM 4120 2984932 - 2984944 + g 75 -4.9 -5.12707 | TTCTCTTATTCTTCT TTCTT TAA AAGAA TTTTTTAGCATTTGA TERM 4121 2985404 - 2985382 - H 75 -9.4 -2.59431 | opp_overlap 2985382, overlap 2985378 TTTCTCCATAATTTA TATTTTAATC AAA GATTAAAATA TTATCACCTCTCTTA TERM 4122 2985382 - 2985404 + H 82 -9.4 -3.36648 | opp_overlap 2985382 2985378 TTTCTCCATAATTTA TATTTTAATC AAA GATTAAAATA TTATCACCTCTCTTA TERM 4123 2985665 - 2985706 + H 84 -9.1 -4.20769 | opp_overlap 2985675 2985695 CATGAACCGCCTCAT TTATTTCAAATATTATACT TTAA AGTATAATATATGATATAA TTTATGTTAAAATAT TERM 4124 2985696 - 2985675 - H 72 -7.5 -3.61178 | opp_overlap 2985665, overlap 2985695 CTCATTTATTTCAAA TATTATACT TTAA AGTATAATA TATGATATAATTTAT CLK_2153 2985754 - 2986164 + | hypothetical protein TERM 4125 2986433 - 2986413 - g 75 -5.5 -4.70353 | opp_overlap 2986413 2986418 TAGAAGAAATCAAAA CTAATGAAT ATA ATTCTTTAG TTATTCCTGGGGGCA CLK_2154 2986232 - 2986783 + | DJ-1 family protein TERM 4126 2986866 - 2986918 + T 100 -14.4 -4.19307 | gap 1, opp_overlap 2986866 2986867 2986869, overlap 2986867 2986870 TACGTCCCTGGATAA C-GATTTCTAAGCTTCAGAGAGAGT CTTT ACTCTCTCTGAAGCCAAGAACTCTG TTTATGCTTTCTCTA TERM 4127 2986917 - 2986866 - T 100 -16.8 -3.28924 | opp_overlap 2986866 2986867 2986870, overlap 2986867 2986869 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGAGAGAGT CTTT ACTCTCTCTGAAGCCAAGAACTCT GTTTATGCTTTCTCT TERM 4128 2986916 - 2986867 - T 100 -20.3 -2.57211 | opp_overlap 2986866 2986867 2986870, overlap 2986866 2986869 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGAGAGT CTTT ACTCTCTCTGAAGCCAAGAACTC TGTTTATGCTTTCTC TERM 4129 2986867 - 2986916 + T 100 -18.1 -3.67823 | opp_overlap 2986867 2986866 2986869, overlap 2986866 2986870 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGAGAGT CTTT ACTCTCTCTGAAGCCAAGAACTC TGTTTATGCTTTCTC TERM 4130 2986914 - 2986869 - T 100 -17.1 -2.82623 | opp_overlap 2986867 2986866 2986870, overlap 2986867 2986866 GTCCCTGGATAACGA TTTCTAAGCTTCAGAGAGAGT CTTT ACTCTCTCTGAAGCCAAGAAC TCTGTTTATGCTTTC TERM 4131 2986870 - 2986913 + T 100 -18.4 -2.62928 | opp_overlap 2986869 2986867 2986866, overlap 2986867 2986866 TCCCTGGATAACGAT TTCTAAGCTTCAGAGAGAGT CTTT ACTCTCTCTGAAGCCAAGAA CTCTGTTTATGCTTT glpP 2987699 - 2987136 - | glycerol uptake operon antiterminator regulatory protein CLK_2156 2990618 - 2987748 - | GyrA/ParC subunit family DNA topoisomerase TERM 4132 2990662 - 2990684 + r 82 -9.3 -3.315 | opp_overlap 2990662, overlap 2990661 TATTTACATGGCAAA GGCTAAATA TATAT TATTTAGCC CTTTTATCTAAAACT TERM 4133 2990684 - 2990662 - R 83 -9.3 -3.64103 | opp_overlap 2990662 2990661 TATTTACATGGCAAA GGCTAAATA TATAT TATTTAGCC CTTTTATCTAAAACT CLK_2157 2992647 - 2990692 - | GyrA/ParC subunit family DNA topoisomerase TERM 4134 2991944 - 2991954 + g 70 -4 -4.87803 | opp_overlap 2991926 AAAAGACCTCTTTCA GAAT GAT ATTC TTTTATTTCCGGCTC TERM 4135 2992933 - 2992902 - R 100 -10.4 -5.22039 | opp_overlap 2992907 TTCAAACTTAAAAAA TAATATGCTGATAT ATAA ATATCTGCATATTA AAATAGTATATATAT CLK_2158 2993390 - 2993013 - | hypothetical protein TERM 4136 2993344 - 2993332 - G 82 -4.1 -5.5762 | opp_overlap 2993343 ATTAAATATAAAAAA TAACC TAT GGCTA TTATTAATATAATTA TERM 4137 2993430 - 2993440 + H 83 -4 -5.81412 | CTCTTACTATCTTTA TATG CTA CATA TTTTTTTTGGATAGA TERM 4138 2993544 - 2993517 - H 72 -3.7 -5.31519 | opp_overlap 2993518 2993533, overlap 2993518 ATATGTAAACAAAAA CTTTAAAATTT TTATAT AAATTTTAAAA TTAATAAAATTTATT TERM 4139 2993821 - 2993832 + G 70 -4.4 -4.98857 | opp_overlap 2993821 CCGTCATAAAAAAAT TAGG CAAG CCTA TTTTTATAATTGCAT CLK_2159 2993577 - 2994749 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 4140 2995040 - 2995052 + G 71 -5.5 -4.42513 | opp_overlap 2995040 AGATATAGATAATAA GCCTG GTA TAGGC TTTATGTTTGTGCTT CLK_2160 2994762 - 2995112 + | hypothetical protein TERM 4141 2995610 - 2995624 + G 76 -5 -5.15682 | AACTAATTTTATTAC TAGCTG TTA CAGTTA TTTTATTTATATTTT CLK_2161 2995573 - 2995809 + | hypothetical protein CLK_2162 2995829 - 2996722 + | polysaccharide deacetylase family protein TERM 4142 2996718 - 2996748 + T 90 -9.9 -3.77953 | opp_overlap 2996706 2996720 2996723 2996728, overlap 2996720 2996723 AAACAAGCTTTACGA AATAAGGAAAGTG CTATA CACTTTCCTTATC TTGTTACATTCTTGA TERM 4143 2996746 - 2996720 - T 100 -13.2 -3.75015 | opp_overlap 2996718 2996720 2996723, overlap 2996706 2996723 2996728 ACAAGCTTTACGAAA TAAGGAAAGTGC TAT ACACTTTCCTTA TCTTGTTACATTCTT TERM 4144 2996720 - 2996746 + T 95 -12.5 -3.46359 | opp_overlap 2996720 2996706 2996723 2996728, overlap 2996718 2996723 ACAAGCTTTACGAAA TAAGGAAAGTG CTATA CACTTTCCTTA TCTTGTTACATTCTT TERM 4145 2996723 - 2996743 + T 93 -9.8 -3.84992 | opp_overlap 2996720 2996706 2996723 2996728, overlap 2996720 2996718 AGCTTTACGAAATAA GGAAAGTG CTATA CACTTTCC TTATCTTGTTACATT TERM 4146 2996743 - 2996723 - T 95 -10.5 -4.0031 | opp_overlap 2996723 2996720 2996718, overlap 2996720 2996706 2996728 AGCTTTACGAAATAA GGAAAGTGC TAT ACACTTTCC TTATCTTGTTACATT CLK_2163 2998090 - 2996801 - | hypothetical protein galE 2999108 - 2998128 - | UDP-glucose 4-epimerase TERM 4147 2999475 - 2999489 + r 73 -7.2 -4.03767 | overlap 2999468 TTATACTAGCTTTTG TGCAAA GGC TTTGCA TTCTTCTATTGTTGA CLK_2165 2999876 - 2999460 - | flavodoxin TERM 4148 2999983 - 2999969 - R 82 -4.4 -5.80817 | overlap 2999976 GCTAATATAAAAAAA TAAAAA GTA TTTTTA AATAAAATAAATAGT CLK_2166 3001565 - 3000144 - | MATE efflux family protein TERM 4149 3000309 - 3000293 - G 77 -8.1 -3.73509 | ATACTAAATCTGAAA TTGGATA AGC TATCCAA GCTCCCATGATATTA TERM 4150 3000540 - 3000528 - G 74 -6.3 -4.40963 | opp_overlap 3000528, overlap 3000525 ATCCTTTAAAAATAA TCCTA TTA TAGGA TTTGCAAATATAAGC TERM 4151 3001940 - 3001955 + r 70 -7.6 -3.41907 | opp_overlap 3001940, overlap 3001939 3001953 CAATAAACAAAAAAA CACCTT ATTT AAGGTG CTTTTGTACTTTTTG TERM 4152 3001955 - 3001940 - R 100 -7.6 -6.08342 | opp_overlap 3001940 3001939 3001953 CAATAAACAAAAAAA CACCTT ATTT AAGGTG CTTTTGTACTTTTTG CLK_2167 3004221 - 3002155 - | AraC family transcriptional regulator TERM 4153 3004827 - 3004809 - g 71 -4.6 -4.72201 | opp_overlap 3004809 CGTTATAAAAAATAA TCCTAAAA TAT TTATAGGA TATTCTGATACTACC CLK_2168 3004480 - 3005517 + | LD-carboxypeptidase family protein glpK 3007600 - 3006104 - | glycerol kinase CLK_2170 3008556 - 3007852 - | glycerol uptake facilitator protein TERM 4154 3008937 - 3008916 - H 72 -6 -4.41353 | opp_overlap 3008916 TTAGATATAGTAAAA GTTAATCT AAATTA AGATTAAC TTTATATTATCTTTA TERM 4155 3008916 - 3008937 + H 70 -6 -4.36854 | opp_overlap 3008916 TTAGATATAGTAAAA GTTAATCT AAATTA AGATTAAC TTTATATTATCTTTA CLK_2171 3009091 - 3009411 + | hypothetical protein TERM 4156 3009440 - 3009477 + T 72 -5.1 -5.04175 | gap 1, opp_overlap 3009441, overlap 3009441 TTTTAATATAAAAAA ATGCTAGTAAT-ATTAAC CTA GTTATTAATTACTAGCAC TTTTTATATAATTAA TERM 4157 3009441 - 3009476 + T 75 -8.6 -3.61421 | gap 1, opp_overlap 3009441, overlap 3009440 TTTAATATAAAAAAA TGCTAGTAAT-ATTAAC CTA GTTATTAATTACTAGCA CTTTTTATATAATTA TERM 4158 3009476 - 3009441 - T 100 -8.6 -5.80817 | gap 1, opp_overlap 3009441 3009440 TTTAATATAAAAAAA TGCTAGTAAT-ATTAAC CTA GTTATTAATTACTAGCA CTTTTTATATAATTA CLK_2172 3010221 - 3009523 - | VanZ family membrane protein TERM 4159 3010312 - 3010352 + r 89 -9.9 -3.54475 | opp_overlap 3010322 3010327, overlap 3010322 3010327 TTTATAATTCATATT TATTATTTAAGGAAAGTGC ACC GCACTTTCCTTATAAAATC TTATCTACTACAAAA TERM 4160 3010342 - 3010322 - R 100 -14.1 -3.10343 | opp_overlap 3010312 3010322 3010327, overlap 3010327 ATATTTATTATTTAA GGAAAGTGC ACC GCACTTTCC TTATAAAATCTTATC TERM 4161 3010322 - 3010342 + r 100 -14.1 -3.37474 | opp_overlap 3010322 3010327, overlap 3010312 3010327 ATATTTATTATTTAA GGAAAGTGC ACC GCACTTTCC TTATAAAATCTTATC CLK_2173 3011429 - 3010353 - | ABC transporter, permease protein TERM 4162 3010985 - 3011007 + g 73 -9.2 -2.55309 | opp_overlap 3010990, overlap 3010984 3010983 AAAACTTAGGTATAT CCAAATAGGA ACT TCCTATATGG GATTTATTGTTAAAA CLK_2174 3012309 - 3011413 - | ABC transporter, ATP-binding protein TERM 4163 3012128 - 3012117 - G 73 -5.8 -4.60889 | opp_overlap 3012116 3012117 AAGTATTTTCAAAAA CAGG TTCT CCTG CTATCTTTATTTCTC CLK_2175 3012695 - 3012315 - | GntR family transcriptional regulator CLK_2176 3013383 - 3012868 - | VanZ family membrane protein TERM 4164 3013497 - 3013470 - H 79 -8.6 -4.10453 | opp_overlap 3013474 TAAAGCGTTCTAAAA GCATTAAGTGTA CTAC TACACCTAATAC ACTTATAATATACTA CLK_2177 3013814 - 3015526 + | hybrid cluster protein CLK_2178 3016287 - 3015685 - | methyl-accepting chemotaxis protein TERM 4165 3016777 - 3016797 + G 80 -6.3 -4.89852 | TATATTTATTTCTCT TTATTTAGG CAC TCTAAATAA TTTTTATAGATATGA TERM 4166 3017076 - 3017090 + G 71 -5.8 -4.36372 | opp_overlap 3017072, overlap 3017072 ATCTAATAGCAGATC TTATAG GAT CTATAA TTTCTTACATTTTTT CLK_2179 3016541 - 3017146 + | membrane-spanning protein TERM 4167 3017229 - 3017286 + T 100 -15.5 -4.16121 | opp_overlap 3017227 3017224 3017234 3017239, overlap 3017234 3017239 GTTTAAAAATTGATT TAAAATAAAACACTATGCAATTTTT CATTTGAC AAAATTTGCATAGTGTTTTATTTTG TTTATAATATTTTTA TERM 4168 3017281 - 3017234 - T 100 -13.2 -4.22948 | opp_overlap 3017229 3017234 3017239, overlap 3017227 3017224 3017239 AAAATTGATTTAAAA TAAAACACTATGCAATTTTT CATTTGAC AAAATTTGCATAGTGTTTTA TTTTGTTTATAATAT TERM 4169 3017234 - 3017281 + T 100 -13.2 -5.03227 | opp_overlap 3017227 3017224 3017234 3017239, overlap 3017229 3017239 AAAATTGATTTAAAA TAAAACACTATGCAATTTTT CATTTGAC AAAATTTGCATAGTGTTTTA TTTTGTTTATAATAT TERM 4170 3017276 - 3017239 - T 100 -8.7 -5.10933 | opp_overlap 3017234 3017229 3017239, overlap 3017224 3017234 TGATTTAAAATAAAA CACTATGCAATTTTT CATTTGAC AAAATTTGCATAGTG TTTTATTTTGTTTAT TERM 4171 3017239 - 3017276 + T 100 -8.7 -5.3689 | opp_overlap 3017224 3017239 3017234, overlap 3017234 3017229 TGATTTAAAATAAAA CACTATGCAATTTTT CATTTGAC AAAATTTGCATAGTG TTTTATTTTGTTTAT CLK_2180 3019056 - 3017338 - | methyl-accepting chemotaxis protein TERM 4172 3019012 - 3019025 + g 70 -3.9 -5.05577 | opp_overlap 3019006, overlap 3018999 TATTAACATTATTAT TGTTA ATAT TAACA TTTTTACTTTAATTT TERM 4173 3020110 - 3020097 - g 73 -3.9 -5.31072 | AGAATATAATAAAAA CAAAA GGTA TTTTG TAGCTAATATGCCTA CLK_2181 3019384 - 3020616 + | aminopeptidase II TERM 4174 3020708 - 3020658 - T 95 -11.6 -3.57462 | opp_overlap 3020658 3020665, overlap 3020665 CACCTTATTTTTAAA TGGAAAAGATATGAATTTGTAATA TCA TATTTAAAATTCATATCTTTTTCA TTTTCAATTATTAAA TERM 4175 3020658 - 3020708 + T 100 -13.8 -4.36127 | opp_overlap 3020658 3020665, overlap 3020665 CACCTTATTTTTAAA TGGAAAAGATATGAATTTGTAATA TCA TATTTAAAATTCATATCTTTTTCA TTTTCAATTATTAAA TERM 4176 3020665 - 3020701 + T 95 -8.3 -5.10154 | opp_overlap 3020658 3020665, overlap 3020658 TTTTTAAATGGAAAA GATATGAATTTGTAATA TCA TATTTAAAATTCATATC TTTTTCATTTTCAAT TERM 4177 3020701 - 3020665 - T 80 -8.3 -4.35524 | opp_overlap 3020665 3020658, overlap 3020658 TTTTTAAATGGAAAA GATATGAATTTGTAATA TCA TATTTAAAATTCATATC TTTTTCATTTTCAAT gerAC 3021938 - 3020805 - | spore germination protein TERM 4178 3020981 - 3020998 + gT 71 -2.1 -5.4756 | TTTTATTAATAAATT TATATGA CTCT TTATATA TTTTTTGTTCAAATT TERM 4179 3021576 - 3021566 - GT 78 -4 -5.45813 | opp_overlap 3021566 GATTAAAAAATAAAA GATT TGT AATC TCGCTTATTCCATCA CLK_2183 3023025 - 3021904 - | spore germination protein gerAA 3024502 - 3023015 - | spore germination protein TERM 4180 3023058 - 3023072 + g 71 -2.1 -5.37171 | TTTTTTCTAAAATCC TCTTG ACGCA CAGGA TTTTTATTTGGTATT TERM 4181 3024670 - 3024632 - R 100 -16.5 -5.01732 | opp_overlap 3024632 AATTCCGTTAAAAAA CACTATGAAAATTTATT TAAAT AATAAATTTTCATAGTG TTTTTTATGTTTTAT TERM 4182 3024632 - 3024670 + r 100 -16.5 -5.65678 | opp_overlap 3024632 AATTCCGTTAAAAAA CACTATGAAAATTTATT TAAAT AATAAATTTTCATAGTG TTTTTTATGTTTTAT CLK_2185 3024972 - 3024763 - | hypothetical protein TERM 4183 3024989 - 3025044 + r 71 -6.6 -4.11183 | gap 1, opp_overlap 3025001 ATGTACACCCTCCAT TTGAATAAAATT-CCAAAGCATGTTTA CAT TATACATCTTTTGGTAATTTTTTTCAA TTATTTATAATCAAC TERM 4184 3025066 - 3025098 + r 73 -7.3 -4.12188 | opp_overlap 3025077 ATAATCAACCATGTA TTTTATAATAATTTC ATT GAAATTGTTATGGAA TTTTCCAAGTAATAA TERM 4185 3025108 - 3025163 + r 83 -11 -2.64888 | gap 1, opp_overlap 3025115, overlap 3025115 ATGGAATTTTCCAAG TAATAAACTCTTTTTGAGT-TGCATAT TTA ATATACACACTTAAAAAGAGTTTTTTA ATATTTAACTAAGTT TERM 4186 3025115 - 3025156 + r 100 -9.1 -5.32699 | gap 1, opp_overlap 3025115, overlap 3025108 TTTCCAAGTAATAAA CTCTTTTTGAGT-TGCATAT TTA ATATACACACTTAAAAAGAG TTTTTTAATATTTAA TERM 4187 3025156 - 3025115 - R 84 -9.1 -4.3255 | gap 1, opp_overlap 3025108 3025115 TTTCCAAGTAATAAA CTCTTTTTGAGT-TGCATAT TTA ATATACACACTTAAAAAGAG TTTTTTAATATTTAA TERM 4188 3025217 - 3025238 + r 70 -3.2 -5.33866 | opp_overlap 3025217 3025221, overlap 3025221 TAAAATACATACTAA TAAATAAA AAATAC TTTATTTA TTTTTTATAAATTTA CLK_2186 3025813 - 3025232 - | glutamine amidotransferase subunit PdxT (glutamineamidotransferase glutaminase subunit pdxT) CLK_2187 3026687 - 3025815 - | pyridoxine biosynthesis protein TERM 4189 3026937 - 3026905 - R 100 -8.7 -5.4492 | opp_overlap 3026905 3026907, overlap 3026907 GATATACATAAAAAA TACTTTTAGAAATTA TAT CAATCTCTAAAAGCA TTTTTAAATAATAAT TERM 4190 3026935 - 3026907 - R 84 -9.1 -4.34353 | opp_overlap 3026907 3026905, overlap 3026905 TATACATAAAAAATA CTTTTAGAAATTA TAT CAATCTCTAAAAG CATTTTTAAATAATA CLK_2188 3027785 - 3027054 - | polysaccharide deacetylase family protein TERM 4191 3027960 - 3027920 - R 93 -9.3 -4.69962 | opp_overlap 3027925 3027951, overlap 3027925 CACATCAAAAAATAA CAAAAGCTAAGAAACAAAT AAA ATTTACCTCTTAGCTTCTA AATTCTCTAGTAATT TERM 4192 3027955 - 3027925 - R 100 -9.2 -5.22104 | opp_overlap 3027925 3027951, overlap 3027920 CAAAAAATAACAAAA GCTAAGAAACAAAT AAA ATTTACCTCTTAGC TTCTAAATTCTCTAG CLK_2189 3029579 - 3028005 - | DEAD-box ATP dependent DNA helicase TERM 4193 3029637 - 3029611 - R 100 -11.7 -4.8622 | GCTGTTAATTAAAAA TGGCTGTTGAC ATATA ATCAACAGCCA ATAAAATATCTTTTC CLK_2190 3029823 - 3029656 - | hypothetical protein CLK_2191 3030255 - 3030680 + | hypothetical protein TERM 4194 3030722 - 3030758 + T 95 -8.3 -5.2197 | opp_overlap 3030722 TTTCATTATTAAAAA GCTATATATTTGTAA CCATACA TTACAAATACATAGC TTTTTAATTTTTATA TERM 4195 3030758 - 3030722 - T 100 -11.2 -4.77036 | opp_overlap 3030722 TTTCATTATTAAAAA GCTATATATTTGTAAC CATAC ATTACAAATACATAGC TTTTTAATTTTTATA CLK_2192 3032463 - 3030769 - | methyl-accepting chemotaxis protein TERM 4196 3031807 - 3031795 - G 74 -7.7 -3.737 | opp_overlap 3031795 3031794 TAACTCCTTATTAAA GTCTC CCT GAGAC ATATTTTTAAGATAT TERM 4197 3032513 - 3032479 - R 72 -7.5 -3.55563 | opp_overlap 3032479 3032481 ATCCCACCTCCTAAA TATGTATAAATTATT TTTCT AGTAATTTATACATA TAATATCGAATTAAT TERM 4198 3032479 - 3032513 + r 75 -9.7 -2.64973 | opp_overlap 3032479, overlap 3032481 ATCCCACCTCCTAAA TATGTATAAATTATT TTTCT AGTAATTTATACATA TAATATCGAATTAAT TERM 4199 3032584 - 3032618 + r 91 -7.4 -5.45802 | opp_overlap 3032584 TTTTAAATTAAAAAA CATTATGAAATTAATT TAC AACTAACTTCATAATG TTTTTATTTTAACAA TERM 4200 3032618 - 3032584 - R 100 -11.8 -5.37593 | opp_overlap 3032584 TTTTAAATTAAAAAA CATTATGAAATTAATT TAC AACTAACTTCATAATG TTTTTATTTTAACAA CLK_2193 3033070 - 3032660 - | universal stress protein family protein CLK_2194 3033711 - 3034352 + | iron-sulfur cluster-binding protein TERM 4201 3034498 - 3034447 - T 82 -10.5 -2.8166 | opp_overlap 3034447, overlap 3034444 3034451 CACTAAATAAATTTA TATAGCTATGAAGATAAATTTGT TTTTAT ACAAGGTTACCTTCATAGCCATA TTTAATTATAATTTC TERM 4202 3034447 - 3034498 + T 79 -8.3 -4.05902 | opp_overlap 3034447 3034444 3034451 CACTAAATAAATTTA TATAGCTATGAAGATAAATTTGT TTTTAT ACAAGGTTACCTTCATAGCCATA TTTAATTATAATTTC TERM 4203 3034494 - 3034451 - T 74 -9.1 -3.0122 | opp_overlap 3034447, overlap 3034447 3034444 AAATAAATTTATATA GCTATGAAGATAAATTTGT TTTTAT ACAAGGTTACCTTCATAGC CATATTTAATTATAA CLK_2195 3035519 - 3034602 - | glutaminase TERM 4204 3035792 - 3035778 - R 71 -7.2 -3.88787 | opp_overlap 3035778 3035777 GTATATTCTTATAAA GTGAAA TAT TTTCAC ATTAATGATTCATTT CLK_2196 3036946 - 3035921 - | hypothetical protein TERM 4205 3036410 - 3036428 + g 71 -3.2 -5.28942 | ATTTTTATTCAATCT TAATAAAG CAA CTTCATTA TTTTTCTTTAGAGTC TERM 4206 3036742 - 3036752 + g 70 -4 -4.94992 | overlap 3036734 TATTAACCTTATTCA TAAG TTG CTTA TTTTTATCAATTTCA TERM 4207 3037216 - 3037195 - R 90 -7.3 -5.39721 | opp_overlap 3037195 3037198 TTATTATATAAAAAA GCAGTGTCC ATTA AGACACTAC TTTAAGCCCATTTGT CLK_2197 3037497 - 3037213 - | putative lipoprotein TERM 4208 3037604 - 3037566 - R 100 -9.9 -5.00895 | opp_overlap 3037566, overlap 3037569 TCCATTAGATAAAAA TAAGCTGAATAATATTT GTTTA AAATACTATTCAGCCCA TGTAATACTCAATTT TERM 4209 3037601 - 3037569 - R 100 -11.6 -4.59846 | opp_overlap 3037566, overlap 3037566 ATTAGATAAAAATAA GCTGAATAATATTT GTTTA AAATACTATTCAGC CCATGTAATACTCAA CLK_2198 3039688 - 3037628 - | methyl-accepting chemotaxis protein TERM 4210 3038467 - 3038478 + g 70 -5.8 -4.21974 | overlap 3038465 TAGTGATTTCATTTG CTGC TTCT GCAG TTTGTTGACTAGTAG TERM 4211 3040073 - 3040118 + r 80 -9.3 -3.2032 | opp_overlap 3040073 3040078, overlap 3040078 TTAATATATAGTAAA TAAAAGCTATGAAATTAAGTT ATTA ATCTTAATTCCATAGCTTTTC CTTTTAATATAAAGA TERM 4212 3040118 - 3040073 - R 100 -11.5 -3.93383 | opp_overlap 3040073 3040078, overlap 3040078 TTAATATATAGTAAA TAAAAGCTATGAAATTAAGTT ATTA ATCTTAATTCCATAGCTTTTC CTTTTAATATAAAGA TERM 4213 3040078 - 3040113 + r 93 -9.2 -4.71222 | opp_overlap 3040073 3040078, overlap 3040073 ATATAGTAAATAAAA GCTATGAAATTAAGTT ATTA ATCTTAATTCCATAGC TTTTCCTTTTAATAT TERM 4214 3040113 - 3040078 - R 100 -11.4 -4.98061 | opp_overlap 3040078 3040073, overlap 3040073 ATATAGTAAATAAAA GCTATGAAATTAAGTT ATTA ATCTTAATTCCATAGC TTTTCCTTTTAATAT CLK_2199 3041005 - 3040205 - | hypothetical protein TERM 4215 3041276 - 3041329 + r 86 -11.5 -2.60206 | gap 1, opp_overlap 3041279 3041284, overlap 3041284 AGATAATAAATATTA TAAGAAAATAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTATTTTTATA ACTTTATTTATAATC TERM 4216 3041326 - 3041279 - R 100 -13.2 -3.60631 | gap 1, opp_overlap 3041276 3041284, overlap 3041284 TAATAAATATTATAA GAAAATAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTATTTTT ATAACTTTATTTATA TERM 4217 3041321 - 3041284 - R 100 -13.1 -4.83722 | gap 1, opp_overlap 3041276 3041284, overlap 3041279 AATATTATAAGAAAA TAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTA TTTTTATAACTTTAT TERM 4218 3041284 - 3041321 + r 100 -10.9 -4.95896 | gap 1, opp_overlap 3041284 3041279, overlap 3041276 AATATTATAAGAAAA TAGCCTAACAAAATG-TA TTT TAGCACTTTGTTAGGCTA TTTTTATAACTTTAT TERM 4219 3041386 - 3041369 - R 72 -8.5 -3.20553 | opp_overlap 3041369, overlap 3041368 CAAGATCATCAAAAT CAAAAGC TGCT GCTTTTG TATAATTCGTAACCT TERM 4220 3041369 - 3041386 + r 71 -8.5 -2.93901 | opp_overlap 3041369 3041368 CAAGATCATCAAAAT CAAAAGC TGCT GCTTTTG TATAATTCGTAACCT nrdB 3042377 - 3041349 - | ribonucleoside-diphosphate reductase, beta subunit TERM 4221 3041522 - 3041548 + g 81 -9.7 -3.43151 | opp_overlap 3041522 3041521 3041524 3041528, overlap 3041528 CTACTAATCTTAAAT TAGAAAGATAT TTAAT ATATCTTTCTA TTAATTCATCATTAA TERM 4222 3041548 - 3041522 - G 76 -9.7 -2.80464 | opp_overlap 3041522 3041528, overlap 3041521 3041524 3041528 CTACTAATCTTAAAT TAGAAAGATAT TTAAT ATATCTTTCTA TTAATTCATCATTAA nrdA 3044863 - 3042572 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 4223 3045030 - 3045040 + r 70 -2.6 -5.55769 | CTTATTTTTTCACTA TATA TTG TATA TTTTTTATTATAGAG CLK_2202 3045888 - 3045259 - | hypothetical protein TERM 4224 3046840 - 3046830 - g 91 -4 -6.00086 | opp_overlap 3046830 ACATGAGAAAAAAAA GATA AAA TATC TTCATGACTGGGAAG CLK_2203 3046561 - 3047682 + | hypothetical protein TERM 4225 3047944 - 3047934 - f 73 -5.4 -4.78157 | ATGAAAAATAATAAA GATG AAA CATC ATATAGTATATCTAT TERM 4226 3048083 - 3048064 - g 74 -3 -5.49729 | AATCAGGTAAAAAAA TTCTTTAT GATG ATAAAAAA AATAAAAATTTTGAA CLK_2204 3047982 - 3048770 + | hypothetical protein TERM 4227 3048818 - 3048772 - T 85 -8.3 -4.66535 | gap 1, overlap 3048773 3048776 AAGCTCTAAAATAAA CTATCCCCTGTGAATAATA-AT GTTA ATATACTATCCACAGGGGTTAA AATTGCTTATCTTTT TERM 4228 3048817 - 3048773 - T 82 -9.6 -3.38836 | gap 1, overlap 3048772 3048776 AGCTCTAAAATAAAC TATCCCCTGTGAATAATA-AT GTTA ATATACTATCCACAGGGGTTA AAATTGCTTATCTTT TERM 4229 3048814 - 3048776 - T 82 -11.3 -2.54636 | gap 1, overlap 3048773 3048772 TCTAAAATAAACTAT CCCCTGTGAATAATA-AT GTTA ATATACTATCCACAGGGG TTAAAATTGCTTATC dinB 3049979 - 3048930 - | DNA polymerase IV TERM 4230 3048991 - 3049007 + g 73 -8.1 -3.39471 | opp_overlap 3048990 TTTGATACAGTAAGT CCTATAA GTC TTATAGG TTCCTTAAAATTTAT TERM 4231 3049896 - 3049907 + g 78 -3 -5.56673 | overlap 3049889 CCCTACTATTACAGG CTTA CCTT TAAG TTTTTTATTATCCAT TERM 4232 3050337 - 3050393 + r 100 -19.3 -3.81879 | opp_overlap 3050346 3050357, overlap 3050338 3050346 3050357 AATTTTATATAATTT CTTTGTAAACAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTGTTTATAAAA TTATTAAATTTTCAC TERM 4233 3050338 - 3050392 + r 100 -22.8 -2.88404 | opp_overlap 3050346 3050357, overlap 3050337 3050346 3050357 ATTTTATATAATTTC TTTGTAAACAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTGTTTATAAA ATTATTAAATTTTCA TERM 4234 3050384 - 3050346 - R 100 -17.8 -3.53761 | opp_overlap 3050338 3050337 3050346 3050357, overlap 3050357 TAATTTCTTTGTAAA CAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTG TTTATAAAATTATTA TERM 4235 3050346 - 3050384 + r 100 -17.8 -3.95051 | opp_overlap 3050346 3050357, overlap 3050338 3050337 3050357 TAATTTCTTTGTAAA CAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTG TTTATAAAATTATTA TERM 4236 3050357 - 3050373 + r 70 -5.1 -4.90217 | opp_overlap 3050346 3050357, overlap 3050346 3050338 3050337 TAAACAGATTAAAAA CCACTAA TTA TAAGTGG TTTTTAATCTGTTTA TERM 4237 3050373 - 3050357 - R 70 -5.1 -4.90217 | opp_overlap 3050357 3050346 3050338 3050337, overlap 3050346 TAAACAGATTAAAAA CCACTAA TTA TAAGTGG TTTTTAATCTGTTTA CLK_2206 3051679 - 3050444 - | dihydroorotate dehydrogenase family protein CLK_2207 3052995 - 3051679 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 4238 3052939 - 3052964 + g 78 -6.9 -4.53602 | opp_overlap 3052944, overlap 3052941 TGCTTCTTCAATAGC TAGAAGAGGTG TAAA CACTTCTTCTC TTTCTTTCATATAAG TERM 4239 3052941 - 3052962 + g 86 -9.5 -3.8721 | opp_overlap 3052944, overlap 3052939 CTTCTTCAATAGCTA GAAGAGGTG TAAA CACTTCTTC TCTTTCTTTCATATA TERM 4240 3053060 - 3053098 + r 100 -16.4 -2.94232 | opp_overlap 3053065 3053088, overlap 3053065 CAATAGTTTAACAAA AAAAATAGACCATTTCTA ACT TAGAAATGGTCTATTTTG ATTATTTAAGACAAA TERM 4241 3053065 - 3053093 + r 100 -16.3 -4.62203 | opp_overlap 3053065 3053088, overlap 3053060 GTTTAACAAAAAAAA TAGACCATTTCTA ACT TAGAAATGGTCTA TTTTGATTATTTAAG TERM 4242 3053093 - 3053065 - R 100 -16.3 -6.09888 | opp_overlap 3053060 3053065, overlap 3053088 GTTTAACAAAAAAAA TAGACCATTTCTA ACT TAGAAATGGTCTA TTTTGATTATTTAAG pyrR 3053990 - 3053442 - | pyrimidine operon regulatory protein/uracil phosphoribosyltransferase TERM 4243 3054050 - 3054028 - R 91 -7 -5.56673 | ATTTACAACAAAAAA TGTCTCGACC CTT AGCCAAGACA TTTGTATAGACTTAT TERM 4244 3054291 - 3054258 - R 79 -4.7 -5.626 | TATTTTATAAAAAAA TCACACTGCCAAAAT AGTT AATTTAACAGTATGA TTATAATCTTTAAGA CLK_2209 3055372 - 3054317 - | hypothetical protein TERM 4245 3055009 - 3054969 - G 79 -7.1 -4.36343 | opp_overlap 3054966 3054977 TAAGTAATCAAGAAA GTTATAAATGCTATAATTG CCG CAAGTATAGGATTTGTAAC TCCTCGTATAATATT TERM 4246 3055781 - 3055740 - R 100 -9.2 -6.15536 | opp_overlap 3055740 3055743 AATCAATAAAAAAAA TAATAAGAATATATAATA ACCTAA TATTACACATTCTTATTA TTATAACTTATACTA CLK_2210 3056455 - 3055862 - | hypothetical protein CLK_2211 3057032 - 3056613 - | MarR family transcriptional regulator CLK_2212 3059308 - 3057050 - | putative excinuclease ABC, A subunit TERM 4247 3058390 - 3058402 + g 72 -6.3 -4.28115 | CTTTTAATACAGTTT GAACA GAT TGTTC TTTAATTTCTTTCAT TERM 4248 3059720 - 3059700 - R 71 -6.9 -4.10953 | AGCCAGCAAATGAAA CAGCTAAAA ATA TATTAGCTG AAAAAAGCATAATTT TERM 4249 3059838 - 3059809 - R 72 -5 -4.99861 | opp_overlap 3059796 3059809 TATTAATTATAAAAA GCAGAGCTATAT CTTCTT ATAATGCTCTGC TTTTTAATAATTTAT TERM 4250 3059809 - 3059838 + r 70 -5 -4.85267 | opp_overlap 3059809, overlap 3059796 TATTAATTATAAAAA GCAGAGCTATAT CTTCTT ATAATGCTCTGC TTTTTAATAATTTAT ligT 3060381 - 3059854 - | 2'-5' RNA ligase TERM 4251 3060410 - 3060462 + r 73 -6.8 -4.23781 | gap 1, opp_overlap 3060409 3060422, overlap 3060412 3060417 3060420 ACTTAAAATTAAATT TTTTTGT-TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTATATATATA TTTAATTTTAATAAA TERM 4252 3060412 - 3060460 + r 84 -9.4 -3.71107 | gap 1, opp_overlap 3060409 3060422, overlap 3060410 3060417 3060420 TTAAAATTAAATTTT TTTGT-TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTATATATA TATTTAATTTTAATA TERM 4253 3060417 - 3060454 + r 100 -17.5 -3.16931 | opp_overlap 3060409 3060422, overlap 3060412 3060410 3060420 ATTAAATTTTTTTGT TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTA TATATATATTTAATT TERM 4254 3060420 - 3060451 + r 100 -14.8 -3.70689 | opp_overlap 3060409 3060422, overlap 3060417 3060412 3060410 AAATTTTTTTGTTAA TATTAGCTTAGTTT ATAC AAACTAAGCTAATA TTATATATATATTTA TERM 4255 3060449 - 3060422 - R 93 -13 -3.01791 | opp_overlap 3060420 3060417 3060412 3060410, overlap 3060409 ATTTTTTTGTTAATA TTAGCTTAGTTT ATAC AAACTAAGCTAA TATTATATATATATT CLK_2216 3060964 - 3060566 - | hypothetical protein CLK_2217 3063251 - 3061539 - | methyl-accepting chemotaxis protein TERM 4256 3062345 - 3062365 + g 70 -8.4 -3.08344 | ACTCCTGCATGCTTG CTGCAATA TTATT TATTGCAG TATCTATAGTTTCCA TERM 4257 3063206 - 3063220 + g 72 -4.3 -5.05577 | opp_overlap 3063206 CTACTATTAAAAAAG CACAA ATTAG TTGTG TTTTTACTTTCCTTT TERM 4258 3063852 - 3063798 - R 100 -14.9 -3.69094 | gap 1, opp_overlap 3063798 3063805, overlap 3063805 AATCTATGATTGAAA GATAAAATCTAGTGAAGATGTTATTA TAAA TAGCAA-ATCTTCACTAGATTTTATC TTTTTACAATTATAA TERM 4259 3063798 - 3063852 + r 100 -15.7 -4.6902 | gap 2, opp_overlap 3063798 3063805, overlap 3063805 AATCTATGATTGAAA GATAAAATCTAGTGAAGAT--GTTATT ATA AATAGCAAATCTTCACTAGATTTTATC TTTTTACAATTATAA TERM 4260 3063805 - 3063845 + r 90 -8 -4.98672 | gap 2, opp_overlap 3063798 3063805, overlap 3063798 GATTGAAAGATAAAA TCTAGTGAAGAT--GTTATT ATA AATAGCAAATCTTCACTAGA TTTTATCTTTTTACA TERM 4261 3063845 - 3063805 - R 81 -7.2 -4.80455 | gap 1, opp_overlap 3063805 3063798, overlap 3063798 GATTGAAAGATAAAA TCTAGTGAAGATGTTATTA TAAA TAGCAA-ATCTTCACTAGA TTTTATCTTTTTACA CLK_2218 3064398 - 3063961 - | MutT/nudix family protein TERM 4262 3063991 - 3064016 + g 72 -4.8 -4.86133 | TCCCTCATTAGCCAG TGCATCCT TTAACCAATC AGGATGCA TTTTTACTATATCTA TERM 4263 3064486 - 3064432 - H 84 -5.2 -5.63645 | gap 2, opp_overlap 3064476, overlap 3064448 TTAAAATATAAAAAA CCCGAGAAGATAAAAATTCAGCGCAT AAAAA ACACGCTGAACCTTC-CCC-CTCGGG CATTTTATTCCAATA TERM 4264 3064472 - 3064448 - H 87 -7.2 -5.1523 | overlap 3064432 CCGAGAAGATAAAAA TTCAGCGCAT AAAAA ACACGCTGAA CCTTCCCCCTCGGGC TERM 4265 3065636 - 3065658 + G 72 -7.8 -3.69216 | overlap 3065635 3065639 CCTGAATCTGCTAGT GGATATCCTA CTG TAGGATATAC TGTTTTAAATGAAGA TERM 4266 3066239 - 3066255 + G 85 -8.1 -4.56093 | opp_overlap 3066238 3066236 ACAGGAACTGAATAC TTTGGAT TAA ATCCAAA TTTTATGGTTGGGTT CLK_2219 3065117 - 3067114 + | hypothetical protein TERM 4267 3067161 - 3067190 + T 100 -8 -6.11229 | opp_overlap 3067161 ATTTCAAATAAAAAA TGTCAAGCTAAA TTTACT TTCAGCTTGACA TTTTTTTATTTTAGT TERM 4268 3067190 - 3067161 - T 100 -10.2 -5.64421 | opp_overlap 3067161 ATTTCAAATAAAAAA TGTCAAGCTAAA TTTACT TTCAGCTTGACA TTTTTTTATTTTAGT CLK_2220 3069420 - 3067201 - | glycosy hydrolase family protein TERM 4269 3068828 - 3068808 - G 72 -6.9 -4.17316 | opp_overlap 3068808 AGTCTTTTAAAAGAA GTGTAAAAG TTT CTTTTTCAC TTTCGTCTGCTAAAG TERM 4270 3069629 - 3069583 - R 87 -6.2 -5.66868 | gap 2, opp_overlap 3069583 AATGAATTAAAAAAA GTGTTAGGAGTTC-T-TCCTCA TAACT TAAGGACATGAATTCCTAACAC TTATATTTTAAACTA nagB 3070381 - 3069647 - | glucosamine-6-phosphate isomerase TERM 4271 3069971 - 3069943 - G 70 -8.3 -3.10597 | overlap 3069942 3069946 TTTCTGATTCAAAAC TTATATTGGGTTC ATT AAACCCAATATGA CCATTGACACCGATA TERM 4272 3069968 - 3069946 - G 76 -10 -2.76404 | overlap 3069943 3069942 CTGATTCAAAACTTA TATTGGGTTC ATT AAACCCAATA TGACCATTGACACCG nagA 3071606 - 3070464 - | N-acetylglucosamine-6-phosphate deacetylase TERM 4273 3071335 - 3071347 + g 82 -7.7 -4.51777 | opp_overlap 3071334 3071335 GTAGTTGGTAAAAAT GAGGT CAC ACCTC TTTTAGTTATAGTAT CLK_2223 3072501 - 3071767 - | GntR family transcriptional regulator CLK_2224 3072823 - 3073680 + | BglG family transcriptional antiterminator TERM 4274 3073856 - 3073812 - T 100 -13.2 -3.83502 | opp_overlap 3073814, overlap 3073814 TATTTTTACACTAAA GAGGCGTAATACCAATAT CCATAAATT ATATTGGTATTACGCCTT AATAAATAAACTTTA TERM 4275 3073814 - 3073854 + T 100 -15.8 -3.1876 | opp_overlap 3073814 3073812 TTTTTACACTAAAGA GGCGTAATACCAATAT CCATAAATT ATATTGGTATTACGCC TTAATAAATAAACTT TERM 4276 3073854 - 3073814 - T 100 -15.8 -3.5032 | opp_overlap 3073814, overlap 3073812 TTTTTACACTAAAGA GGCGTAATACCAATAT CCATAAATT ATATTGGTATTACGCC TTAATAAATAAACTT ptbA 3074379 - 3073900 - | PTS system, glucose subfamily, IIA component TERM 4277 3074397 - 3074422 + H 70 -4.9 -4.8543 | opp_overlap 3074397 3074399 3074402, overlap 3074399 TTAAAACCTCCCAAA TATAAGTAATA CAAA TATTACTTACA TTTTTATAAAAATTC TERM 4278 3074420 - 3074399 - H 70 -7.5 -3.37685 | opp_overlap 3074397 3074399, overlap 3074397 3074402 AAAACCTCCCAAATA TAAGTAATA CAAA TATTACTTA CATTTTTATAAAAAT TERM 4279 3074448 - 3074473 + H 73 -9.1 -2.92667 | opp_overlap 3074448, overlap 3074445 AATTCAAATAAAAAA GGCACAAGTTA TCCC TAACTTATGCC TGATTTAACAGTTAC TERM 4280 3074473 - 3074448 - H 100 -11.3 -5.67283 | opp_overlap 3074445 3074448 AATTCAAATAAAAAA GGCACAAGTTA TCCC TAACTTATGCC TGATTTAACAGTTAC TERM 4281 3074603 - 3074568 - H 78 -6.4 -4.89562 | opp_overlap 3074568 3074570 3074573, overlap 3074570 TTAAAATTAACAAAA TTTAATCTATTGACAT TTTT ATTTCAATAGATTATA ATTAATTTATCAGCG TERM 4282 3074570 - 3074601 + H 73 -9 -2.92267 | opp_overlap 3074568 3074570, overlap 3074568 3074573 AAAATTAACAAAATT TAATCTATTGACAT TTTT ATTTCAATAGATTA TAATTAATTTATCAG TERM 4283 3074601 - 3074570 - H 72 -9 -2.69639 | opp_overlap 3074570 3074568 3074573, overlap 3074568 AAAATTAACAAAATT TAATCTATTGACAT TTTT ATTTCAATAGATTA TAATTAATTTATCAG TERM 4284 3074640 - 3074668 + H 100 -9.7 -5.80364 | opp_overlap 3074640 CAACGTTGGGCAAAA GCTGAAAAGGT TATCTAT ACCTTTTCGGC TTTTTTTGTTGCAAT TERM 4285 3074668 - 3074640 - H 77 -7.5 -4.08692 | opp_overlap 3074640 CAACGTTGGGCAAAA GCTGAAAAGGT TATCTAT ACCTTTTCGGC TTTTTTTGTTGCAAT TERM 4286 3074799 - 3074829 + H 85 -9.8 -3.16288 | opp_overlap 3074795 3074799 3074817, overlap 3074798 CCCCTAAAGGATAAC GATTTCTAAGGGGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTTA TERM 4287 3074870 - 3074839 - H 95 -11.6 -3.62522 | overlap 3074858 GAAGTCTGTTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGC CAAGAGCTCTGTTTA nagE 3075075 - 3076517 + | PTS system, N-acetylglucosamine-specific, IIBC component TERM 4288 3076601 - 3076556 - f 89 -12.3 -2.75993 | opp_overlap 3076557 3076562, overlap 3076562 TCACTTATATATAAC TTAAAAGCCTACAAATATA TGAATATT TATATTTGTAGGCTTTTAT CTATAATTATTTATT TERM 4289 3076557 - 3076600 + F 100 -15.8 -3.08961 | opp_overlap 3076556 3076562, overlap 3076562 CACTTATATATAACT TAAAAGCCTACAAATATA TGAATATT TATATTTGTAGGCTTTTA TCTATAATTATTTAT TERM 4290 3076562 - 3076595 + F 100 -11.3 -4.64591 | opp_overlap 3076556 3076562, overlap 3076557 ATATATAACTTAAAA GCCTACAAATATA TGAATATT TATATTTGTAGGC TTTTATCTATAATTA TERM 4291 3076595 - 3076562 - f 100 -11.3 -4.3487 | opp_overlap 3076562 3076557, overlap 3076556 ATATATAACTTAAAA GCCTACAAATATA TGAATATT TATATTTGTAGGC TTTTATCTATAATTA TERM 4292 3078117 - 3078127 + G 70 -5.4 -4.62783 | overlap 3078108 CAGGACTCATAGTTA TGTC TAT GACA TTTTTCCAATCAATA CLK_2227 3077000 - 3078370 + | MATE efflux family protein TERM 4293 3078392 - 3078432 + T 84 -9.3 -3.74361 | opp_overlap 3078401, overlap 3078396 3078401 TGAAGAATATATATT TAGATAAAAGGTGACAT TTATGTT ATGTCACCTTTTATTCA TTCTTAGTCAATATC TERM 4294 3078396 - 3078428 + T 95 -12.3 -3.56142 | opp_overlap 3078401, overlap 3078392 3078401 GAATATATATTTAGA TAAAAGGTGACAT TTATGTT ATGTCACCTTTTA TTCATTCTTAGTCAA TERM 4295 3078401 - 3078423 + T 86 -7.8 -4.84262 | opp_overlap 3078401, overlap 3078396 3078392 TATATTTAGATAAAA GGTGACAT TTATGTT ATGTCACC TTTTATTCATTCTTA TERM 4296 3078423 - 3078401 - T 83 -7.8 -4.56358 | opp_overlap 3078396 3078392 3078401 TATATTTAGATAAAA GGTGACAT TTATGTT ATGTCACC TTTTATTCATTCTTA CLK_2228 3079424 - 3078504 - | ABC transporter system permease involved in Fe-S cluster assembly CLK_2229 3080145 - 3079426 - | ABC transporter, ATP-binding protein CLK_2230 3080837 - 3080235 - | hypothetical protein CLK_2231 3081390 - 3081872 + | ferric uptake regulation protein TERM 4297 3082054 - 3082106 + T 100 -19.6 -5.4659 | opp_overlap 3082054 CATTAAATAAAAAAA TAAGCGAAAATAAAAGGTGACACA TATAC TATGCCACCTTTTATTTTCGCTTA TTTTTATTTATATTA TERM 4298 3082106 - 3082054 - T 100 -24 -5.99154 | opp_overlap 3082054 CATTAAATAAAAAAA TAAGCGAAAATAAAAGGTGACACA TATAC TATGCCACCTTTTATTTTCGCTTA TTTTTATTTATATTA CLK_2232 3083596 - 3082202 - | MATE efflux family protein TERM 4299 3082863 - 3082852 - G 70 -4.4 -4.87665 | opp_overlap 3082852, overlap 3082854 CTTGAGTTACAAAAA TAGG AATA CCTA TCTTAAGTATTTCAA CLK_2233 3085031 - 3083832 - | metallo-beta-lactamase family protein/flavodoxin CLK_2234 3086996 - 3085089 - | acyl-CoA dehydrogenase family protein/electron transfer protein TERM 4300 3085617 - 3085629 + g 81 -4.9 -5.3658 | AACTGCTAATTCTTC TATGA GTT TCATA TTTTCTTTTTCTCCT TERM 4301 3086379 - 3086364 - G 72 -7.6 -3.67175 | ATTGTTGAAAATTAA TTCTGC AGTA GCAGAA GAACGAATACCCATC TERM 4302 3086877 - 3086888 + g 70 -4.4 -4.90302 | opp_overlap 3086873 TAACTTATGAATTTG TTCC AAAG GGAA TTTATTTTCTTGATC TERM 4303 3087258 - 3087240 - R 100 -11.8 -6.23317 | AGAAAAATAAAAAAA GAAGGTCT TTA AGACCTTC AGGCTGTTGATAAAT CLK_2235 3088015 - 3087353 - | IS3 family transposase CLK_2236 3088884 - 3088237 - | IS3 family transposase TERM 4304 3088976 - 3088921 - H 83 -7.1 -5.08824 | gap 1, opp_overlap 3088921, overlap 3088923 TTTCGACGTAAAAAA TACTCCTCCTTATGATAGACATTTTA TTATT TTATGTGTCTACCATAAGG-GGAGCA TATCATCCTTTGATA TERM 4305 3088974 - 3088923 - H 77 -7.5 -4.17608 | gap 1, opp_overlap 3088921, overlap 3088921 TCGACGTAAAAAATA CTCCTCCTTATGATAGACATTTTA TTATT TTATGTGTCTACCATAAGG-GGAG CATATCATCCTTTGA CLK_2237 3089016 - 3089354 + | mannose-specific phosphotransferase system component IIAB TERM 4306 3089667 - 3089651 - f 78 -4.5 -5.48825 | TATTATTCAAAAAAA TAATCCA TGT TAGATTA TAGAACTTTGGAGGT CLK_2238 3089693 - 3090409 + | CoA-transferase, A subunit CLK_2239 3090418 - 3091074 + | CoA-transferase, B subunit TERM 4307 3091235 - 3091264 + T 100 -12.3 -4.4648 | AATAAAAATATTTGA TACCGGCAATTAC TTTT GTAGTTGTCGGTA TTTTATGCTACAGAT TERM 4308 3091540 - 3091521 - T 100 -13.6 -4.4017 | opp_overlap 3091521 TGAAGCGTTATAAAA CCCCATGC ATTT GCATGGGG TTCTTGAACAATCTG TERM 4309 3091521 - 3091540 + T 100 -13.6 -3.63073 | opp_overlap 3091521 TGAAGCGTTATAAAA CCCCATGC ATTT GCATGGGG TTCTTGAACAATCTG CLK_2240 3092225 - 3091656 - | hypothetical protein TERM 4310 3092643 - 3092668 + r 100 -12 -5.36965 | opp_overlap 3092643 TTTTCAATACAAAAA GAAGGCCTAT GACTAG ATAGGCCTTC TTTTTTGTGCTATTC TERM 4311 3092668 - 3092643 - R 100 -12 -5.0916 | opp_overlap 3092643 TTTTCAATACAAAAA GAAGGCCTAT GACTAG ATAGGCCTTC TTTTTTGTGCTATTC CLK_2241 3093206 - 3092739 - | xanthine dehydrogenase family protein, iron-sulfur binding protein CLK_2242 3094041 - 3093211 - | xanthine dehydrogenase family protein, FAD-binding subunit CLK_2243 3096367 - 3094028 - | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 4312 3095331 - 3095297 - G 72 -8.1 -3.23854 | gap 1, opp_overlap 3095297, overlap 3095295 3095293 3095330 ATAAGAAGTAACATA GGTATGATT-GGTATA AACA CATACCGAATCACACC ATATATTTTCAATAT CLK_2244 3096748 - 3096966 + | pts system sucrose-specific eiibc component (eiibc-scr) (eii-scr) CLK_2245 3097016 - 3097162 + | BglG family transcriptional antiterminator TERM 4313 3097286 - 3097333 + T 93 -9.4 -4.53765 | opp_overlap 3097287 3097289, overlap 3097287 ACATTGTGAAATAAA ATCTAATAGGATGGAGAATGTA GTAT TATATTCCCCATCCTATTAAAA TTTTCTAATATATAT TERM 4314 3097332 - 3097287 - T 100 -15.1 -4.87803 | opp_overlap 3097286 3097287, overlap 3097289 CATTGTGAAATAAAA TCTAATAGGATGGAGAATGTA GTAT TATATTCCCCATCCTATTAAA ATTTTCTAATATATA TERM 4315 3097287 - 3097332 + T 95 -12.9 -3.31175 | opp_overlap 3097287 3097289, overlap 3097286 CATTGTGAAATAAAA TCTAATAGGATGGAGAATGTA GTAT TATATTCCCCATCCTATTAAA ATTTTCTAATATATA TERM 4316 3097330 - 3097289 - T 100 -15.5 -2.70452 | opp_overlap 3097287 3097286, overlap 3097287 TTGTGAAATAAAATC TAATAGGATGGAGAATGTA GTAT TATATTCCCCATCCTATTA AAATTTTCTAATATA CLK_2246 3098726 - 3097509 - | monovalent cation:proton antiporter-2 (CPA2) family protein CLK_2247 3100403 - 3099732 - | HAD family hydrolase TERM 4317 3100072 - 3100087 + g 71 -4.8 -4.6951 | GAAGCAGTAGCAATT GTAAAA GGAA TTTTAC TTTCTTTTAAATAAT CLK_2248 3100693 - 3100433 - | tfoX domain-containing protein CLK_2249 3101418 - 3101305 - | hypothetical protein CLK_2250 3101661 - 3101440 - | hypothetical protein TERM 4318 3101618 - 3101629 + g 78 -3 -5.626 | AAGCCATCTTGATAT TCTA GGGC TAGA TTTTTTTCTAAAATA TERM 4319 3101807 - 3101782 - R 75 -5.5 -5.03994 | opp_overlap 3101782 TTTTATACATAAAAA GAAAGGTTCTA AAAT TAAGACCTTTC TTTCTCAGTGTCAAG TERM 4320 3101860 - 3101850 - R 80 -2.6 -6.15536 | AAGCAACAAAAAAAA TTTT CCT AAAA GAATATAATACAAAA TERM 4321 3101983 - 3101957 - R 93 -8.8 -4.87291 | CATCTTAACCAAAAA GTCCCTCAAA TATAAAG TCTGAGGGAC CTACAATACTCTTTA CLK_2251 3103108 - 3102074 - | florfenicol/chloramphenicol resistance protein CLK_2252 3104751 - 3103273 - | drug resistance ABC transporter ATP-binding protein TERM 4322 3104353 - 3104338 - G 72 -7.6 -3.56142 | CTCATCAATAAGCAA GAAGGA GCTC TCCTTC AAAAACATAGCAGCC TERM 4323 3104816 - 3104785 - R 77 -7.5 -4.06786 | opp_overlap 3104785 3104788, overlap 3104788 ATTTAATAGTATAAA TAACAAAGTCG GAACAATAGG CGACTTTGTTA TTACTCCATATAAGT TERM 4324 3104974 - 3104938 - R 100 -9.6 -5.28778 | overlap 3104941 ATTATTTATAAAAAA TAAGAGCCGCAAGAAT TAATT ATTCTTACAGCTCATA GATATACGTAGTTAA TERM 4325 3104971 - 3104941 - R 100 -11.3 -4.73105 | overlap 3104938 ATTTATAAAAAATAA GAGCCGCAAGAAT TAATT ATTCTTACAGCTC ATAGATATACGTAGT TERM 4326 3105213 - 3105231 + r 70 -6.1 -4.19624 | opp_overlap 3105213 3105212 CAATAAAGAATGAAT GAAGAAA ATCTA TTTCTTC TTTATCTTCACAATA CLK_2253 3105353 - 3105222 - | hypothetical protein TERM 4327 3105288 - 3105276 - G 78 -4.1 -5.39721 | TGAGGATACAAAAAA GATGT CGT ACACC TCTGGTATCCCCTTT TERM 4328 3105393 - 3105450 + r 95 -12.5 -3.72576 | gap 1, opp_overlap 3105393 3105406, overlap 3105406 TTAAATTTAAGTAAA TTGTAGC-AATAAAGCCTTCAAAAGT GTATTGG ACTCTTGAAGGCTTTATTCGATACAA TTTGCTAACCCAAAA TERM 4329 3105450 - 3105393 - R 100 -14.7 -3.98173 | gap 1, opp_overlap 3105393 3105406, overlap 3105406 TTAAATTTAAGTAAA TTGTAGC-AATAAAGCCTTCAAAAGT GTATTGG ACTCTTGAAGGCTTTATTCGATACAA TTTGCTAACCCAAAA TERM 4330 3105406 - 3105436 + r 80 -8.4 -4.20783 | opp_overlap 3105393 3105406, overlap 3105393 AATTGTAGCAATAAA GCCTTCAAAAGT GTATTGG ACTCTTGAAGGC TTTATTCGATACAAT TERM 4331 3105436 - 3105406 - R 95 -10.6 -4.25458 | opp_overlap 3105406 3105393, overlap 3105393 AATTGTAGCAATAAA GCCTTCAAAAGT GTATTGG ACTCTTGAAGGC TTTATTCGATACAAT CLK_2254 3106507 - 3105710 - | hypothetical protein CLK_2255 3106994 - 3108409 + | catalase TERM 4332 3108631 - 3108651 + T 82 -5.5 -5.47431 | opp_overlap 3108630 3108631, overlap 3108624 TTGATATTGAAGAAT GTATAGTTT CGC AAACTTTAC TTTTTTCTGTATTCA rumA-1 3110455 - 3109103 - | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 4333 3109561 - 3109573 + g 72 -4.9 -4.92783 | CTAAGAAGTCTTTTA CTATA CTA TATAG TTTTTCTGCTCCCTT TERM 4334 3110734 - 3110695 - R 81 -7.4 -4.8048 | opp_overlap 3110698 3110701, overlap 3110698 TTTTCATATTAAAAA CAATAATTAAGAGCCTCT TTAC AGATACTCTTAATTATTT ATCCATTCTATTTAT TERM 4335 3110698 - 3110731 + r 71 -6.9 -4.0174 | opp_overlap 3110695 3110698, overlap 3110701 TCATATTAAAAACAA TAATTAAGAGCCTCT TTAC AGATACTCTTAATTA TTTATCCATTCTATT TERM 4336 3110731 - 3110698 - R 86 -9.1 -4.50988 | opp_overlap 3110698 3110701, overlap 3110695 TCATATTAAAAACAA TAATTAAGAGCCTCT TTAC AGATACTCTTAATTA TTTATCCATTCTATT CLK_2257 3111188 - 3110742 - | hypothetical protein TERM 4337 3111287 - 3111299 + H 73 -3.5 -5.52384 | TAAATTATATGTTTT TAATA AAT TATTA TTTTTTTAATAAAAA TERM 4338 3112905 - 3112895 - g 72 -2.6 -5.3658 | ATTAGAAAAAGAAAA TATT TTA AATA ATTCCATAATAGCTA CLK_2258 3111519 - 3113378 + | sulfatase family protein CLK_2259 3113404 - 3114156 + | hypothetical protein ribH 3114848 - 3114384 - | 6,7-dimethyl-8-ribityllumazine synthase ribAB 3116085 - 3114880 - | bifunctional riboflavin biosynthesis protein RibAB TERM 4339 3115883 - 3115893 + g 82 -5.4 -5.40474 | CATATTTCTAATTCT TCCA ATC TGGA TTTTTTTACGGGAGT ribE 3117079 - 3116393 - | riboflavin synthase, alpha subunit ribD 3118157 - 3117060 - | riboflavin biosynthesis protein RibD TERM 4340 3118337 - 3118316 - R 100 -9.5 -5.56264 | opp_overlap 3118316 CTTAAATATAAAAAA TCTCTAGAG TTTC CTCCAGAGA TTTATATACGAAACA TERM 4341 3118316 - 3118337 + r 73 -7.3 -4.03234 | opp_overlap 3118316 CTTAAATATAAAAAA TCTCTAGAG TTTC CTCCAGAGA TTTATATACGAAACA pepD 3119995 - 3118559 - | aminoacyl-histidine dipeptidase CLK_2265 3120549 - 3121442 + | metallo-beta-lactamase family protein TERM 4342 3121563 - 3121505 - T 100 -11.7 -4.45168 | gap 1, opp_overlap 3121506 3121510, overlap 3121510 TTTCGAAAATACAAA CCAAATAATAGCAGTCTTTTTTAATT TTATCTCT AATTAAAAAAGACTGCTATTATTTC- TTTTTTATTTACACT TERM 4343 3121506 - 3121563 + T 100 -17.7 -5.64421 | opp_overlap 3121505 3121510, overlap 3121510 TTCGAAAATACAAAC CAAATAATAGCAGTCTTTTTTAATT TTATCTCT AATTAAAAAAGACTGCTATTATTTC TTTTTTATTTACACT TERM 4344 3121559 - 3121510 - T 100 -18.5 -4.25088 | opp_overlap 3121506 3121510, overlap 3121505 AAAATACAAACCAAA TAATAGCAGTCTTTTTTAATT TTATCTCT AATTAAAAAAGACTGCTATTA TTTCTTTTTTATTTA TERM 4345 3121510 - 3121559 + T 100 -18.5 -5.26158 | opp_overlap 3121510 3121505, overlap 3121506 AAAATACAAACCAAA TAATAGCAGTCTTTTTTAATT TTATCTCT AATTAAAAAAGACTGCTATTA TTTCTTTTTTATTTA mgtA 3124324 - 3121679 - | magnesium-translocating P-type ATPase TERM 4346 3124685 - 3124658 - R 93 -7.1 -5.80951 | opp_overlap 3124658 ATTCAAAATAAAAAA CCTTCGTCA AACTTAAACA TGACGAAGG TATATTAACAACACT TERM 4347 3124908 - 3124925 + r 73 -4.3 -5.26316 | TCAAGAAAATTCTTA TAAATTT TTTA AAATTTA TTTTTTATCCAATGA TERM 4348 3125062 - 3125023 - R 74 -8.8 -2.96695 | gap 1, opp_overlap 3125030, overlap 3125026 3125027 TTTTCCACTAAAGGA TAAC-GATTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 4349 3125057 - 3125027 - R 80 -9.8 -2.77227 | opp_overlap 3125030, overlap 3125026 3125023 CCACTAAAGGATAAC GATTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 4350 3125030 - 3125054 + r 90 -10.1 -3.71552 | opp_overlap 3125027 3125026 3125023 CTAAAGGATAACGAT TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 4351 3125098 - 3125067 - R 95 -11.6 -3.62522 | overlap 3125086 GAATTCTGTTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGC CAAGGACTCTGTCTA CLK_2267 3125515 - 3125111 - | hypothetical protein TERM 4352 3125581 - 3125542 - R 71 -7 -3.89695 | gap 1, opp_overlap 3125537 3125530 3125542 3125544, overlap 3125537 3125571 CCCTTATAAATAGAA TATCTATAATATTATT-AT ACC ATAAATAATATTATAAATA ATTTGTAAATAATTG TERM 4353 3125833 - 3125784 - R 70 -3.1 -5.33866 | opp_overlap 3125787, overlap 3125787 TAAAGTTATAAAAAA TAATAGCAAATACATATAGTTAT TTCT ATTAAAATATGTATCTGCTATTT ATTATTAATATTATT purD 3127085 - 3125844 - | phosphoribosylamine--glycine ligase purH 3128636 - 3127137 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 4354 3128150 - 3128160 + g 78 -4 -5.34857 | TTCTAGTTTTTATAT TAAC CTG GTTA TTTTCTTTTATTTCA TERM 4355 3128733 - 3128691 - R 93 -11.6 -3.12351 | opp_overlap 3128691 3128689 3128692, overlap 3128694 TTTTTTCACACCGAA CCACCACTTATATGTTTTCT TTA AAAAAACATATAAGTGGCAC TATTTCAATGTGCAA TERM 4356 3128730 - 3128694 - R 100 -17.7 -2.77182 | opp_overlap 3128692 3128691 3128689, overlap 3128691 TTTCACACCGAACCA CCACTTATATGTTTTCT TTA AAAAAACATATAAGTGG CACTATTTCAATGTG purN 3129465 - 3128848 - | phosphoribosylglycinamide formyltransferase purM 3130587 - 3129592 - | phosphoribosylformylglycinamidine cyclo-ligase purF 3132096 - 3130648 - | amidophosphoribosyltransferase purC 3132892 - 3132188 - | phosphoribosylaminoimidazole-succinocarboxamide synthase purE 3133371 - 3132892 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 4357 3133444 - 3133408 - R 83 -3.8 -5.82281 | gap 1 AAATATATAAAAAAA TTCCGCT-AAGATTTCT ATGG AGAATCCTAGAGCGGAA CTTAAGCGCACTGCA TERM 4358 3133659 - 3133678 + r 70 -8 -3.30701 | opp_overlap 3133659 ATATTTTCATCATAA TATTCGTA CCAT TACGAATA TTGCATTTGATGAAA TERM 4359 3133678 - 3133659 - R 70 -8 -3.41229 | opp_overlap 3133659 ATATTTTCATCATAA TATTCGTA CCAT TACGAATA TTGCATTTGATGAAA TERM 4360 3133894 - 3133861 - R 88 -8.1 -4.7416 | GGAAAACGTGAAAAA CCGGTGGTAAAACTA AAAT TAGCATCTCCACCGG ATAAAACTTTATGAT CLK_2275 3136568 - 3134013 - | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 4361 3136138 - 3136151 + g 83 -6.7 -5.093 | CTAAAAGCTTCTGCC GCCAT TTCA ATGGC TTTTATTATTTTCAC TERM 4362 3136800 - 3136843 + r 100 -9.2 -5.38549 | gap 1, opp_overlap 3136798 3136805 3136813, overlap 3136805 TATGATAAAGAAATG TATAATGAAGAAATGGAGATA AAT TCTCTCCATTTCATCATT-TA TTTTTATTATTTAAA TERM 4363 3136805 - 3136839 + r 100 -11.6 -5.11254 | opp_overlap 3136798 3136805 3136813, overlap 3136800 TAAAGAAATGTATAA TGAAGAAATGGAGATA AAT TCTCTCCATTTCATCA TTTATTTTTATTATT TERM 4364 3136839 - 3136805 - R 95 -11.6 -3.53841 | opp_overlap 3136805 3136800, overlap 3136798 3136813 TAAAGAAATGTATAA TGAAGAAATGGAGATA AAT TCTCTCCATTTCATCA TTTATTTTTATTATT TERM 4365 3136831 - 3136813 - R 70 -6 -4.36596 | opp_overlap 3136805 3136800, overlap 3136805 3136798 TGTATAATGAAGAAA TGGAGATA AAT TCTCTCCA TTTCATCATTTATTT CLK_2276 3138142 - 3136925 - | M20/M25/M40 family peptidase CLK_2277 3139496 - 3138168 - | amidohydrolase family protein TERM 4366 3138221 - 3138242 + g 78 -6.7 -4.68545 | overlap 3138222 TTCTAGCCATAACTC TTTCTTCAT CAAC ATGAAGAAG TTTTCTGTCTTGCAT TERM 4367 3138222 - 3138241 + g 71 -8 -3.40043 | overlap 3138221 TCTAGCCATAACTCT TTCTTCAT CAAC ATGAAGAA GTTTTCTGTCTTGCA CLK_2278 3142544 - 3139527 - | pyridine nucleotide-disulfide family oxidoreductase TERM 4368 3141812 - 3141831 + g 89 -4.4 -5.88565 | opp_overlap 3141827, overlap 3141808 3141827 AAAGAGTTGGATTCA TCTTTATA AAAG TATGAAGA TTTTTTTCTTCTAAA CLK_2279 3143776 - 3142580 - | aspartate/ornithine carbamoyltransferase family protein TERM 4369 3143743 - 3143758 + g 71 -3.4 -5.27399 | CAAATTCAATATTCT TTAATT CTTC AATTAA TTTTTTAATATCTTG TERM 4370 3143951 - 3143990 + r 100 -15.6 -3.57883 | opp_overlap 3143951 3143964, overlap 3143951 3143947 3143964 AATTACCTCAATAAA TTTATTATTAAAATGATA AATT TATCATTTTAATAATAAA TTTACCAAATGTTAT TERM 4371 3143990 - 3143951 - R 100 -15.6 -4.19336 | opp_overlap 3143951 3143947 3143951 3143964, overlap 3143964 AATTACCTCAATAAA TTTATTATTAAAATGATA AATT TATCATTTTAATAATAAA TTTACCAAATGTTAT TERM 4372 3143997 - 3143964 - R 80 -8.5 -4.31692 | opp_overlap 3143951 3143947 3143964 3143951, overlap 3143951 AATTTATTATTAAAA TGATAAATTTATCAT TTTA ATAATAAATTTACCA AATGTTATAAATATT TERM 4373 3144095 - 3144070 - R 77 -7 -4.50353 | opp_overlap 3144070, overlap 3144067 AAATTAAGAAAAGAA GAACCTTTTG AATCTA CAAAAAGTTC TCTATAATCACAAAA hydA 3145512 - 3144118 - | dihydropyrimidinase CLK_2281 3146968 - 3145562 - | xanthine/uracil permease family protein TERM 4374 3145720 - 3145738 + g 71 -7.5 -3.83205 | opp_overlap 3145717 3145719 3145720 CGCTGTGGAAAAGAG TTTCCAC CCATT GTGGAAA TTTACTATAAAAAGT TERM 4375 3146824 - 3146806 - G 71 -7.5 -3.76888 | opp_overlap 3146805 3146806, overlap 3146804 CATTTATAAGAAATA TTGTCTG TTCTG CAGACAA ATTTAGTGCACCACC dpaL 3148201 - 3146990 - | diaminopropionate ammonia-lyase TERM 4376 3148375 - 3148351 - R 80 -3 -6.02546 | opp_overlap 3148351 TCAAATGAAAAAAAA TACAAAGT CTATTATCT ACTTTGTA TCTTTTATTATTAAA TERM 4377 3148497 - 3148483 - R 81 -5.8 -5.34055 | opp_overlap 3148482 3148476 3148483 3148493, overlap 3148476 ATAAATATTAAAAAA TTATCA CTT TGATAA ATTTTTTATCTCCTC CLK_2283 3150249 - 3148486 - | sigma-54 dependent transcriptional regulator TERM 4378 3150365 - 3150379 + H 82 -2.9 -6.32216 | overlap 3150357 TTTTAACTATGCTAT TTATC AATAG GATAA TTTTTTTTTATATAT CLK_2284 3150613 - 3151350 + | hypothetical protein TERM 4379 3151586 - 3151575 - g 75 -5.8 -4.78848 | GTTTTAAATACAAAA GCCT ATAA AGGC CAAAGTCAATCTATA CLK_2285 3151365 - 3151979 + | hypothetical protein CLK_2286 3151960 - 3152808 + | hypothetical protein CLK_2287 3152790 - 3153599 + | putative xanthine dehydrogenase accessory factor CLK_2288 3153625 - 3154170 + | hypothetical protein CLK_2289 3154167 - 3155135 + | iron chelate ABC transporter permease protein CLK_2290 3155132 - 3155926 + | iron chelate ABC transporter ATP-binding protein CLK_2291 3155978 - 3157036 + | putative iron chelate uptake ABC transporter, solute-binding protein TERM 4380 3157073 - 3157045 - f 100 -14.9 -5.85425 | opp_overlap 3157045 TAAATAAACAAAAAA TCCTAATTCATTT AAT AAATGAATTAGGA TTTTTCTACTTTTTA TERM 4381 3157045 - 3157073 + F 100 -14.9 -5.1286 | opp_overlap 3157045 TAAATAAACAAAAAA TCCTAATTCATTT AAT AAATGAATTAGGA TTTTTCTACTTTTTA CLK_2292 3157174 - 3157506 + | hypothetical protein CLK_2293 3157634 - 3158206 + | GDSL family lipase/acylhydrolase CLK_2294 3158913 - 3158320 - | hypothetical protein TERM 4382 3159248 - 3159306 + r 90 -6 -5.95539 | gap 3, opp_overlap 3159257, overlap 3159248 3159257 ACATATAGCTTCCTT TA-AT-T-CAAATATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATATTTATATATATA TTTTTTTATTTAGGA TERM 4383 3159248 - 3159304 + r 100 -13.6 -4.61687 | gap 1, opp_overlap 3159257, overlap 3159248 3159257 ACATATAGCTTCCTT TA-ATTCAAATATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATATTTATATATA TATTTTTTTATTTAG TERM 4384 3159294 - 3159257 - R 100 -20.3 -3.75153 | opp_overlap 3159248 3159248 3159257 TTCCTTTAATTCAAA TATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATA TTTATATATATATTT TERM 4385 3159257 - 3159294 + r 100 -20.3 -4.21994 | opp_overlap 3159257, overlap 3159248 3159248 TTCCTTTAATTCAAA TATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATA TTTATATATATATTT CLK_2295 3160754 - 3159312 - | xanthine/uracil permease family protein TERM 4386 3161238 - 3161276 + r 70 -3.2 -5.28281 | opp_overlap 3161244, overlap 3161239 TTTTCTAAGTACAAA TTAAAATTCAGATAGAGT AAA ACTCCATCTGAATTAAAC TTTTATTTATTTTAT TERM 4387 3161270 - 3161244 - R 100 -13.2 -4.64383 | opp_overlap 3161239 3161238 AAGTACAAATTAAAA TTCAGATAGAGT AAA ACTCCATCTGAA TTAAACTTTTATTTA CLK_2296 3162696 - 3161344 - | sodium:alanine symporter family protein TERM 4388 3163381 - 3163398 + r 100 -9.9 -5.96894 | AACCCATTACTCCCC TCCGCAT TTAA ATGCGGA TTTTTTTATTTCACT TERM 4389 3163500 - 3163521 + r 75 -8.9 -3.27489 | opp_overlap 3163502 3163515, overlap 3163498 3163496 GAATAACGTCCTCAA GAGTATAAA TAAA TTTATACTC TATATTTAAAGTTCC CLK_2297 3165937 - 3163646 - | putative helicase TERM 4390 3166287 - 3166260 - R 83 -3.6 -5.84432 | gap 1, opp_overlap 3166266, overlap 3166252 3166250 TATAACACAAAAAAA TCTATG-CTAACC ATT AGTTAATCATAGA TTTTCTCATAATTTA trmU 3167502 - 3166441 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 4391 3167583 - 3167609 + r 100 -16.8 -3.85114 | opp_overlap 3167586 3167591, overlap 3167586 3167591 GTTTTTGTCAACACT TAAGGAAAGTGC ACC GCACTTTCCTTA TTTACTGTAGCATTT TERM 4392 3167606 - 3167586 - R 100 -14.1 -3.1855 | opp_overlap 3167583 3167586 3167591, overlap 3167591 TTTGTCAACACTTAA GGAAAGTGC ACC GCACTTTCC TTATTTACTGTAGCA TERM 4393 3167586 - 3167606 + r 100 -14.1 -4.04806 | opp_overlap 3167586 3167591, overlap 3167583 3167591 TTTGTCAACACTTAA GGAAAGTGC ACC GCACTTTCC TTATTTACTGTAGCA TERM 4394 3167591 - 3167601 + r 71 -6.8 -4.16371 | opp_overlap 3167586 3167591, overlap 3167586 3167583 CAACACTTAAGGAAA GTGC ACC GCAC TTTCCTTATTTACTG CLK_2299 3169242 - 3167611 - | M20/M25/M40 family peptidase TERM 4395 3168310 - 3168329 + g 72 -2.9 -5.42131 | gap 1 TATATCTTTTAAGTT CTCCATGA TTTCT TC-TGGAG TTTTTTGTATAGTTA CLK_2300 3169739 - 3169242 - | hypothetical protein CLK_2301 3170089 - 3171414 + | HlyC/CorC family protein TERM 4396 3171445 - 3171420 - T 100 -9.1 -5.54894 | opp_overlap 3171421 3171426, overlap 3171421 AAGTGAGTAAAAAAA GTAGAACCTCT ATTT AGAGGTTCTAT AAAATTAAAGTACAT TERM 4397 3171444 - 3171421 - T 100 -12.6 -3.9131 | opp_overlap 3171421 3171426, overlap 3171420 AGTGAGTAAAAAAAG TAGAACCTCT ATTT AGAGGTTCTA TAAAATTAAAGTACA CLK_2302 3172057 - 3171767 - | hypothetical protein thiC 3173389 - 3172076 - | thiamine biosynthesis protein ThiC purF 3174976 - 3173600 - | amidophosphoribosyltransferase TERM 4398 3175053 - 3175028 - R 100 -6.9 -6.02919 | opp_overlap 3175032, overlap 3175032 TTAGAAATAAAAAAA TAAAGCTCACC CGAA GGTAAGCTTTT TATACTATATATAAT TERM 4399 3175032 - 3175049 + r 75 -5.5 -4.96762 | opp_overlap 3175028 3175032 AAATAAAAAAATAAA GCTCACC CGAA GGTAAGC TTTTTATACTATATA TERM 4400 3175049 - 3175032 - R 100 -7.7 -5.36181 | opp_overlap 3175032, overlap 3175028 AAATAAAAAAATAAA GCTCACC CGAA GGTAAGC TTTTTATACTATATA CLK_2305 3175520 - 3175239 - | hypothetical protein CLK_2306 3175888 - 3175712 - | GntR family transcriptional regulator TERM 4401 3175913 - 3175945 + H 100 -8 -5.61596 | opp_overlap 3175919, overlap 3175906 3175915 CCTTACCTTATATCG TATATACTGTATAT ATAAG GTATACAGTATATG TTTTTTTGTCAACCT TERM 4402 3175915 - 3175943 + H 82 -8.4 -4.45201 | opp_overlap 3175919, overlap 3175906 3175913 TTACCTTATATCGTA TATACTGTATAT ATAAG GTATACAGTATA TGTTTTTTTGTCAAC TERM 4403 3176288 - 3176318 + H 91 -4.9 -6.02919 | gap 1, opp_overlap 3176289 CACCGCGAAATATAA TCTTC-GTCCTAAT AAAT ATTAGGATAGAGGA TTTTTTTATTTGTCA TERM 4404 3176362 - 3176381 + H 78 -4.4 -5.45726 | ACAGAATAAATACTT TTATTTGA TAAT TCAAGTAA TTTTTTTCAACTATA CLK_2307 3176598 - 3177110 + | hypothetical protein CLK_2308 3178089 - 3177346 - | iron-sulfur cluster-binding protein TERM 4405 3177844 - 3177860 + g 72 -5.1 -4.74611 | TTTGTTTTCTTCTAC TGGCTTT TTC ATAGCCA TTCTTTTTTCTACTA TERM 4406 3178188 - 3178205 + H 79 -2.1 -6.10295 | AATTTATAGGGGGGT TATTTTT TATG AAGAATA TTTTTTTTATATTAA CLK_2309 3178196 - 3178873 + | cyclic nucleotide-binding protein CLK_2310 3178962 - 3179405 + | putative cell wall hydrolase CLK_2311 3179428 - 3179943 + | hypothetical protein TERM 4407 3180060 - 3180024 - T 77 -6.8 -4.614 | gap 1, opp_overlap 3180024, overlap 3180019 TGCAAGCATATAAAA GCTATGAA-ATTAAGGT ATTA ACCCTATTTTTCATAGC TTTTTCATTTTAGAT TERM 4408 3180024 - 3180060 + T 73 -4.6 -5.10154 | gap 1, opp_overlap 3180024 3180019 TGCAAGCATATAAAA GCTATGAAA-TTAAGGT ATTA ACCCTATTTTTCATAGC TTTTTCATTTTAGAT CLK_2312 3180521 - 3180177 - | hypothetical protein CLK_2313 3182800 - 3180638 - | putative phage infection protein TERM 4409 3182099 - 3182114 + g 72 -4 -5.16969 | TATAGTATCTTTTAT TAAGGG GATA TCCTTA TTTATTTTTTCTATA TERM 4410 3183014 - 3182963 - R 95 -9.9 -4.32402 | gap 1, opp_overlap 3182974 3182977 3182982, overlap 3182966 TTCTAAGCAAAACAA TAAGGCCTAAAATT-TAATAGCAT TATTC ATGCTATTAAAATCTTAGACCTAA ACCCATTCAATATTT TERM 4411 3183011 - 3182966 - R 100 -11.6 -4.26559 | gap 1, opp_overlap 3182974 3182977 3182982, overlap 3182963 TAAGCAAAACAATAA GGCCTAAAATT-TAATAGCAT TATTC ATGCTATTAAAATCTTAGACC TAAACCCATTCAATA CLK_2314 3183860 - 3183108 - | glycerophosphoryl diester phosphodiesterase family protein TERM 4412 3183166 - 3183187 + g 71 -3.1 -5.26907 | TAAGCCCTATCAGGA TAATTAGTA ATGA TGCTAGTTA TTTTATTTTCTATTA TERM 4413 3183969 - 3184021 + r 100 -13.9 -2.57489 | opp_overlap 3183977 3183980, overlap 3183977 AATAAAAAAGTTATA TATAAAAAGAGGTGTATCAAAATAA ATT TAATTTTGATACACTTCTTTTGGTA TAGGTTAAATTGATG TERM 4414 3184013 - 3183977 - R 100 -11.1 -5.04597 | opp_overlap 3183977 3183969, overlap 3183980 AGTTATATATAAAAA GAGGTGTATCAAAATAA ATT TAATTTTGATACACTTC TTTTGGTATAGGTTA TERM 4415 3183977 - 3184013 + r 100 -13.3 -4.36931 | opp_overlap 3183977 3183980, overlap 3183969 AGTTATATATAAAAA GAGGTGTATCAAAATAA ATT TAATTTTGATACACTTC TTTTGGTATAGGTTA TERM 4416 3184010 - 3183980 - R 87 -11.4 -3.07568 | opp_overlap 3183977 3183969, overlap 3183977 TATATATAAAAAGAG GTGTATCAAAATAA ATT TAATTTTGATACAC TTCTTTTGGTATAGG CLK_2315 3185201 - 3184239 - | TPR domain-containing protein TERM 4417 3184623 - 3184633 + g 81 -2.6 -5.80727 | ATCTTTCTTTTCTTT TAAA GTT TTTA TTTTTTGTTGTTTTT CLK_2316 3185663 - 3186916 + | decarboxylase family protein TERM 4418 3187001 - 3186956 - T 100 -10.6 -4.97957 | TATAGAATAATAAAA GGGTACATAGGTAGATTTGT TTTTAC ACATATCCACCTACACACCC TAAAATTAAACTTCT CLK_2317 3188326 - 3187007 - | CBS/transporter associated domain-containing protein TERM 4419 3187087 - 3187097 + g 81 -2.6 -5.7946 | opp_overlap 3187076, overlap 3187076 3187072 TAAATATAAAATTTT TATA TTC TATA TTTTTTTCTTCAGCA TERM 4420 3188539 - 3188519 - R 100 -9.8 -5.95539 | opp_overlap 3188519 CCGTAAATAAAAAAA CACTAGGT GTAAA ACCTAGTG TTTTCAATGGCACGA TERM 4421 3188519 - 3188539 + r 93 -9.8 -4.18018 | opp_overlap 3188519 CCGTAAATAAAAAAA CACTAGGT GTAAA ACCTAGTG TTTTCAATGGCACGA CLK_2318 3189710 - 3188976 - | hypothetical protein TERM 4422 3189851 - 3189823 - R 79 -4 -5.80248 | GAATATATAAAAAAA TAGAAACGAG TACATTAAC CTCATTTCTA TTTATACTTGTAGGG CLK_2319 3190652 - 3189849 - | hypothetical protein TERM 4423 3190383 - 3190393 + g 72 -2.6 -5.41143 | TATATCATTTTTTAT TAAT TCT ATTA TTTTTTTACCCAATA CLK_2320 3191332 - 3190643 - | hypothetical protein TERM 4424 3190849 - 3190864 + g 81 -4.8 -5.3658 | TAGGATCTACAGATT TATGAT TTTC ATCATA TTTTATTTTTATAAT TERM 4425 3191174 - 3191186 + g 70 -6.3 -4.15632 | GTTTCTTGCTCTATC TAAGG GAC CCTTA TTTATATCTCCTGCT CLK_2321 3192295 - 3191408 - | hypothetical protein TERM 4426 3192368 - 3192352 - R 100 -5.1 -6.82077 | opp_overlap 3192352 AGTAAAAAAAAAAAA GCACC TTATATT GGTGC ATTAATCTAAATAAT rpoD 3193455 - 3192370 - | RNA polymerase sigma factor RpoD dnaG 3195252 - 3193480 - | DNA primase TERM 4427 3193727 - 3193749 + g 89 -4.2 -5.8901 | GTTTCTACATTCTTA TTACATAAAG TTT CTATGTGTAA TTTTTTATTTTGTAT TERM 4428 3194356 - 3194373 + g 75 -7.1 -4.07868 | TCCTGCTGTATCTGA GTCATAA GATA TTATGAC TTTATCTGCATATCG CLK_2324 3196563 - 3195535 - | deoxynucleotide triphosphohydrolase family protein TERM 4429 3196031 - 3196056 + g 75 -4.7 -5.02074 | overlap 3196032 TACTTAACTACTTGA CCTTCTAAGGT GTAA GCCTTAGGAGA TTTTTTAGAAAATCC TERM 4430 3196032 - 3196055 + g 74 -8.2 -3.60762 | overlap 3196031 ACTTAACTACTTGAC CTTCTAAGGT GTAA GCCTTAGGAG ATTTTTTAGAAAATC TERM 4431 3197325 - 3197283 - g 76 -3.5 -5.4477 | opp_overlap 3197264 3197290, overlap 3197287 AAATTTTGAAAAAAA TATTTTATTGGCTAGAACC TCCGT GGATATAGCCAATAGTATA AATAATAAAAATTTG CLK_2325 3196705 - 3197775 + | spore coat protein TERM 4432 3197811 - 3197780 - T 100 -8.8 -5.27399 | opp_overlap 3197779 3197782 TAATATATTAAAAAA GATGTAAGCCAATT TTAC ACTAGGCTTACATC CCTTATACTTCTACT ppdK 3200461 - 3197828 - | pyruvate, phosphate dikinase TERM 4433 3198042 - 3198071 + g 83 -10.9 -2.95322 | opp_overlap 3198042 3198039, overlap 3198039 3198037 AGCTTTCCAACACCA GTTTGGTCTATTC TTTG GAATGGATCAAAC TCATATATTTTTTTA TERM 4434 3199009 - 3199021 + g 75 -4.9 -5.05505 | opp_overlap 3198995, overlap 3198995 ATTTTCCTGCTGCAT GAAAA TAT TTTTC TTTTTCATTTATAGT CLK_2327 3201183 - 3200542 - | CBS domain-containing protein TERM 4435 3201715 - 3201725 + r 78 -5.4 -5.10077 | TCTTCTTTTTTTTCT GAAG AAT CTTC TTTTTTACACTCTTT CLK_2328 3202313 - 3201693 - | UBA/TS-N domain-containing protein TERM 4436 3201862 - 3201875 + g 74 -2.4 -5.58522 | opp_overlap 3201862 TCTTTTATATCAGAA GTAG TGCAAT CTAC TTTTTCTTTTATATC era 3203982 - 3203092 - | GTP-binding protein Era cdd 3204396 - 3203998 - | cytidine deaminase CLK_2332 3205178 - 3204480 - | diacylglycerol kinase/PAP2 family protein CLK_2333 3205719 - 3205219 - | hypothetical protein CLK_2334 3207803 - 3205716 - | putative hydrolase CLK_2335 3208986 - 3207826 - | putative stage IV sporulation protein TERM 4437 3207982 - 3207995 + g 72 -2.5 -5.3671 | ATCTAAGTTTTTAGT TATAT TTTT ATATA TTTTTTCATTCTCTT TERM 4438 3208211 - 3208226 + g 71 -4.8 -4.68846 | overlap 3208206 CTCTTTCTTTTTATT CTATAA GTAT TTATAG TTTTAATTTCTTCGT TERM 4439 3208772 - 3208749 - G 71 -3.2 -5.26119 | opp_overlap 3208752, overlap 3208752 TTTTTAAAAATAAAA TAAGAAAAGA GATT CCTTTTCTTT TTACTATTTTTACTT TERM 4440 3208769 - 3208752 - G 71 -4.9 -4.70511 | opp_overlap 3208752, overlap 3208749 TTAAAAATAAAATAA GAAAAGA GATT CCTTTTC TTTTTACTATTTTTA TERM 4441 3208752 - 3208769 + g 72 -4.2 -5.02231 | opp_overlap 3208752 3208749 TTAAAAATAAAATAA GAAAAG AGATTC CTTTTC TTTTTACTATTTTTA TERM 4442 3208868 - 3208851 - G 77 -7.1 -4.23758 | opp_overlap 3208851 AGTCTATATCCAAAA CAAATGT AGTT ACATTTG TCTTAACCACATTTT yqfC 3209272 - 3208976 - | sporulation protein YqfC TERM 4443 3209319 - 3209294 - R 90 -5.6 -5.95539 | opp_overlap 3209294 3209296, overlap 3209296 CCTCAAATAAAAAAA TACTTTCATA TTAATT TATGAAAGCA TTTTTTAATAAATGA TERM 4444 3209317 - 3209296 - R 74 -6 -4.61687 | opp_overlap 3209294 3209296, overlap 3209294 TCAAATAAAAAAATA CTTTCATA TTAATT TATGAAAG CATTTTTTAATAAAT TERM 4445 3209359 - 3209385 + r 83 -11 -2.67934 | opp_overlap 3209364, overlap 3209364 CTATGTATATAATAT AAAAAGCTGAGT TTT ACTCAGCTTTTA CTATTTACTCAATAT TERM 4446 3209364 - 3209380 + r 100 -10.9 -4.51363 | opp_overlap 3209364, overlap 3209359 TATATAATATAAAAA GCTGAGT TTT ACTCAGC TTTTACTATTTACTC TERM 4447 3209380 - 3209364 - R 100 -10.9 -5.1764 | opp_overlap 3209359 3209364 TATATAATATAAAAA GCTGAGT TTT ACTCAGC TTTTACTATTTACTC CLK_2337 3209832 - 3209386 - | GatB/Yqey domain-containing protein rpsU 3210051 - 3209875 - | ribosomal protein S21 CLK_2339 3210532 - 3210188 - | HIT family protein CLK_2340 3211887 - 3210589 - | RNA modification protein CLK_2341 3212645 - 3211887 - | hypothetical protein prmA 3213681 - 3212743 - | ribosomal protein L11 methyltransferase TERM 4448 3213720 - 3213708 - R 73 -2.7 -5.79595 | overlap 3213709 CCTTAAAATAAAAAA CTACT ATT AGTAA ACTATTCTTTTTAAG TERM 4449 3213886 - 3213842 - R 100 -16 -3.08133 | gap 1, opp_overlap 3213852 TATCCAGGGACGTAA CCGCTCT-TTACTCCCACTTT GAAG AAAATGGGAGTATTAGAGCGG GTAGTCATCGGATAA TERM 4450 3213852 - 3213875 + r 71 -8.2 -3.02144 | opp_overlap 3213842 CGTAACCGCTCTTTA CTCCCACTTT GAAG AAAATGGGAG TATTAGAGCGGGTAG TERM 4451 3213988 - 3213958 - R 100 -18.6 -4.49344 | opp_overlap 3213958 3213963 3213968 AAATCCACCACAAAA TATAAGGAAAGTGC GTT GCACTTTCCTTATA TTAGTCTTTGAACCC TERM 4452 3213958 - 3213988 + r 100 -18.6 -3.45571 | opp_overlap 3213958, overlap 3213963 3213968 AAATCCACCACAAAA TATAAGGAAAGTGC GTT GCACTTTCCTTATA TTAGTCTTTGAACCC TERM 4453 3213963 - 3213983 + r 100 -14.1 -3.77775 | opp_overlap 3213958, overlap 3213958 3213968 CACCACAAAATATAA GGAAAGTGC GTT GCACTTTCC TTATATTAGTCTTTG TERM 4454 3213968 - 3213978 + r 71 -6.8 -4.08823 | opp_overlap 3213958, overlap 3213963 3213958 CAAAATATAAGGAAA GTGC GTT GCAC TTTCCTTATATTAGT dnaJ 3215134 - 3213989 - | chaperone protein DnaJ TERM 4455 3214831 - 3214814 - G 78 -6.3 -4.81212 | overlap 3214816 TCCACCAGAAGAAAA TCCTCCT CCAA AGAAGGA ATCGAATATATCTCC TERM 4456 3215226 - 3215196 - R 95 -12.1 -3.64703 | gap 1, opp_overlap 3215196 3215200 GTTTTTGTACTTAAA TTAAGGGA-GGAGT ACAA ACTCCCTCCCTTAA TTCATACCTATTATA TERM 4457 3215196 - 3215226 + r 93 -12.1 -3.22894 | gap 1, opp_overlap 3215196, overlap 3215200 GTTTTTGTACTTAAA TTAAGGGA-GGAGT ACAA ACTCCCTCCCTTAA TTCATACCTATTATA TERM 4458 3215200 - 3215222 + r 74 -8.5 -3.41134 | gap 1, opp_overlap 3215196, overlap 3215196 TTGTACTTAAATTAA GGGA-GGAGT ACAA ACTCCCTCCC TTAATTCATACCTAT dnaK 3217148 - 3215277 - | chaperone protein DnaK TERM 4459 3215722 - 3215747 + g 71 -5.5 -4.47307 | TCTGTTAAATTTGTT GAAGCTGTTAT TGTT ATATTAGCTTC TTTTCCTGTTCCTTT grpE 3217847 - 3217203 - | co-chaperone GrpE hrcA 3218905 - 3217874 - | heat-inducible transcriptional repressor HrcA CLK_2347 3220248 - 3219106 - | putative oxygen-independent coproporphyrinogen III oxidase TERM 4460 3220061 - 3220040 - G 100 -10.9 -4.32857 | opp_overlap 3220036 3220034 GCCTCTAAAGATAAA TAGGTGGGA GTAC CCCCACCTA TAAATATTGTTTTTA lepA 3222082 - 3220274 - | GTP-binding protein LepA TERM 4461 3221116 - 3221134 + g 85 -8.2 -4.5774 | CTGCATCATTTACTT GAAGCTTT TCT AAGGCTTC TTTTAATTCTTCATA CLK_2349 3222618 - 3222223 - | hypothetical protein CLK_2350 3223780 - 3222689 - | stage II sporulation protein gpr 3224938 - 3223964 - | spore protease TERM 4462 3224958 - 3224998 + H 73 -5.8 -4.83593 | opp_overlap 3224969, overlap 3224969 ACATCCTCCTAAATC TCTTTAAAAAATATATTT TTTCT AAATATATTTTTTACTGA TTTTTCATAATTATT TERM 4463 3225205 - 3225179 - g 71 -6 -4.44914 | opp_overlap 3225184 3225201, overlap 3225184 3225194 3225201 CAGCTAAGAAAAGAA TAAAAGTTATAG AAA CTAAAACTCTTA GAAATAAGATGTTAA TERM 4464 3225200 - 3225184 - g 70 -3.7 -5.14949 | opp_overlap 3225184, overlap 3225179 3225194 AAGAAAAGAATAAAA GTTATAG AAA CTAAAAC TCTTAGAAATAAGAT TERM 4465 3225262 - 3225236 - g 82 -7.4 -4.73388 | AATCTTCATTAAAAA CAACAATAAAGA ACT TCTTAACTGTTG TTGAAGGTAAAAACG TERM 4466 3225308 - 3225292 - g 81 -7.3 -4.56133 | overlap 3225286 GTTGAAGAAGCAAAA GCTGCTT ACA AAACAGC TGCTAGAGCTTTAGA rpsT 3225148 - 3225414 + | ribosomal protein S20 TERM 4467 3225455 - 3225408 - T 100 -19.7 -3.82499 | gap 1, opp_overlap 3225417 3225424, overlap 3225400 3225417 3225421 3225424 ATTAAATGCATTAAA CGCTTAAAATAAATAA-CCCGT ATTTA ACGGGTTTATTTATTTTAAGCG CATATAGAATTTATT TERM 4468 3225446 - 3225417 - T 73 -7.4 -4.17491 | gap 1, opp_overlap 3225417 3225424, overlap 3225408 3225421 3225424 ATTAAACGCTTAAAA TAAATAA-CCCGT ATTTA ACGGGTTTATTTA TTTTAAGCGCATATA TERM 4469 3225417 - 3225446 + T 73 -7.4 -4.09243 | gap 1, opp_overlap 3225417 3225408 3225421 3225424, overlap 3225424 ATTAAACGCTTAAAA TAAATAA-CCCGT ATTTA ACGGGTTTATTTA TTTTAAGCGCATATA TERM 4470 3225441 - 3225421 - T 71 -5.4 -4.66535 | opp_overlap 3225417 3225424, overlap 3225417 3225408 3225424 AACGCTTAAAATAAA TAACCCGT ATTTA ACGGGTTT ATTTATTTTAAGCGC TERM 4471 3225438 - 3225424 - T 77 -7.1 -4.43397 | opp_overlap 3225417 3225424, overlap 3225421 3225417 3225408 GCTTAAAATAAATAA CCCGT ATTTA ACGGG TTTATTTATTTTAAG TERM 4472 3225424 - 3225438 + T 81 -7.1 -4.8743 | opp_overlap 3225424 3225421 3225417 3225408, overlap 3225417 GCTTAAAATAAATAA CCCGT ATTTA ACGGG TTTATTTATTTTAAG holA 3226477 - 3225449 - | DNA polymerase III, delta subunit TERM 4473 3225481 - 3225510 + g 95 -7.3 -5.89659 | TTATTATTAATAATT CTACTTCTGTT TGCGTATT AACGGAAGTAG TTTTTATTTTTTTAT TERM 4474 3226165 - 3226180 + g 77 -4.8 -5.25805 | TTTTTATATAATTCT CTATAT CTTT ATATAG TTTTTTAGCTTTATT CLK_2354 3228296 - 3226509 - | ComEC/Rec2 family protein TERM 4475 3227120 - 3227082 - G 77 -9 -3.5525 | ACATATCCCCTCAAA CTCTCCTATATAAATACA ATC TGGAGTTATATTGGAGAG TAAATACTGGGCTCC TERM 4476 3227549 - 3227526 - G 77 -9.8 -2.912 | opp_overlap 3227525 3227526, overlap 3227519 3227538 AGATAAACTATCATA CTTTCTAAAA ACCT TTTTAGAAAG CTTTAATATTATAAT TERM 4477 3227526 - 3227549 + g 77 -9.8 -2.98173 | opp_overlap 3227526 3227519 3227538, overlap 3227525 AGATAAACTATCATA CTTTCTAAAA ACCT TTTTAGAAAG CTTTAATATTATAAT TERM 4478 3228145 - 3228135 - G 72 -2.6 -5.48063 | AGCCAAGATAAAAAA TAAT AAA ATTA TAATAAAATTTTTGC TERM 4479 3228212 - 3228193 - G 100 -8.6 -5.22794 | ATAATTATTAAAAAA GATGCAGT AAAT ACTGCACC TAATAATATATTATT CLK_2355 3228538 - 3228308 - | hypothetical protein CLK_2356 3231237 - 3228643 - | putative cation transporting ATPase TERM 4480 3229219 - 3229237 + g 71 -9 -2.88212 | AATATTTTTTGAAGC TTGTAGAA TCT TTCTACAA TCTACTATACTCATT TERM 4481 3231528 - 3231577 + r 73 -6.7 -4.24984 | opp_overlap 3231531, overlap 3231531 TTCTCTAAAATAATA AAACCTATAAGTTAGTATTATAA TTAA TTCCATTACTAACTTATAGGTTA TTTATACTTTTATAT TERM 4482 3231574 - 3231531 - R 100 -10.6 -5.093 | opp_overlap 3231528 3231531 TCTAAAATAATAAAA CCTATAAGTTAGTATTATAA TTAA TTCCATTACTAACTTATAGG TTATTTATACTTTTA TERM 4483 3231531 - 3231574 + r 80 -8.4 -4.2092 | opp_overlap 3231531, overlap 3231528 TCTAAAATAATAAAA CCTATAAGTTAGTATTATAA TTAA TTCCATTACTAACTTATAGG TTATTTATACTTTTA CLK_2357 3232716 - 3231745 - | hypothetical protein CLK_2358 3232727 - 3233266 + | hypothetical protein TERM 4484 3234804 - 3234817 + T 72 -3.9 -5.44721 | opp_overlap 3234804 ATGCTACCGCATTAA TTTTC TATC GAAAA TTTTTTTCAAGTCCT selB 3237156 - 3235249 - | selenocysteine-specific translation elongation factor TERM 4485 3236507 - 3236535 + g 88 -9 -4.37092 | TTTGTAACAACCTTT GAAGGATAAATC TGAAC GGTTTGTCCTTC TTTTATAGAACCACT selA 3238563 - 3237175 - | L-seryl-tRNA selenium transferase selD 3239595 - 3238630 - | selenide, water dikinase, selenocysteine-containing TERM 4486 3239514 - 3239528 + g 70 -5.7 -4.24745 | opp_overlap 3239511 TTATTTTATATACTG CTGCA TCATC TGCAG TTTCTATTCCTACTA CLK_2362 3240423 - 3239815 - | putative comE operon protein 1 TERM 4487 3240395 - 3240384 - G 74 -3 -5.45802 | CTGCTAAAATAAAAA CTAT TATT ATAG ATCCTATTATTTTCT CLK_2363 3240612 - 3241859 + | D-alanyl-D-alanine carboxypeptidase family protein TERM 4488 3241862 - 3241911 + T 90 -6.7 -5.67063 | opp_overlap 3241862 3241867 ATATTATTTTTAACA CAAAAGCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGCTTTTA TTTTTTTATGGTAAC TERM 4489 3241911 - 3241862 - T 74 -8.9 -3.0497 | opp_overlap 3241862, overlap 3241867 ATATTATTTTTAACA CAAAAGCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGCTTTTA TTTTTTTATGGTAAC TERM 4490 3241906 - 3241867 - T 77 -6.6 -4.66938 | opp_overlap 3241862, overlap 3241862 ATTTTTAACACAAAA GCTATGAAATATAGATTT AATA ACATCTTAATTTCATAGC TTTTATTTTTTTATG CLK_2364 3242868 - 3241966 - | RluA family pseudouridine synthase TERM 4491 3243157 - 3243189 + r 88 -11.6 -2.89971 | gap 1, opp_overlap 3243157 3243163, overlap 3243158 3243163 AAAATTCCTAAAAAC CA-AAAATGAAGGGA AAAA TCCCTTCATTTTATG TATGCTATATCATAG TERM 4492 3243189 - 3243157 - R 95 -11.6 -3.38674 | gap 1, opp_overlap 3243157 3243158 3243163, overlap 3243163 AAAATTCCTAAAAAC CA-AAAATGAAGGGA AAAA TCCCTTCATTTTATG TATGCTATATCATAG TERM 4493 3243158 - 3243187 + r 87 -10.9 -2.99813 | opp_overlap 3243157 3243163, overlap 3243157 3243163 AAATTCCTAAAAACC AAAAATGAAGGGA AAAA TCCCTTCATTTTA TGTATGCTATATCAT TERM 4494 3243182 - 3243163 - R 100 -10.8 -5.18355 | opp_overlap 3243158 3243157 3243163, overlap 3243157 CCTAAAAACCAAAAA TGAAGGGA AAAA TCCCTTCA TTTTATGTATGCTAT TERM 4495 3243163 - 3243182 + r 100 -10.8 -4.63586 | opp_overlap 3243163 3243157, overlap 3243158 3243157 CCTAAAAACCAAAAA TGAAGGGA AAAA TCCCTTCA TTTTATGTATGCTAT CLK_2365 3243574 - 3243194 - | putative endoribonuclease L-PSP CLK_2366 3244864 - 3243590 - | putative cell envelope-related function transcriptional attenuator CLK_2367 3245444 - 3244875 - | HDIG domain-containing protein TERM 4496 3245504 - 3245483 - R 70 -6.1 -4.24534 | opp_overlap 3245483, overlap 3245477 3245475 TAATCAACACATAAA TTAAATTTA TGCA TAAATTTAA TTATAATTTAATATC nadD 3246132 - 3245527 - | nicotinate nucleotide adenylyltransferase TERM 4497 3245671 - 3245691 + g 86 -2.6 -6.07374 | AAATAATATTTCTTT TCCATATT TTAAT AACATGGA TTTTTTCTTTTTTAT CLK_2369 3246668 - 3246375 - | putative RNA-binding protein obg 3247969 - 3246695 - | Spo0B-associated GTP-binding protein TERM 4498 3247923 - 3247908 - G 77 -7.6 -4.07568 | opp_overlap 3247907 TTTTCTCTTCTAAAA GAGATG GATC CATCTC CTCCCTTTCCTGATT TERM 4499 3248318 - 3248346 + r 93 -13.3 -2.79289 | opp_overlap 3248323, overlap 3248323 TTTAATTGAATCCTA AAAAAGCACCCTT ATA AAGGGTGCTTTTA ATTATTCAGCTACTA TERM 4500 3248341 - 3248323 - R 100 -13.2 -5.09426 | opp_overlap 3248323 3248318 TTGAATCCTAAAAAA GCACCCTT ATA AAGGGTGC TTTTAATTATTCAGC TERM 4501 3248323 - 3248341 + r 100 -13.2 -4.56133 | opp_overlap 3248323, overlap 3248318 TTGAATCCTAAAAAA GCACCCTT ATA AAGGGTGC TTTTAATTATTCAGC rpmA 3248650 - 3248348 - | ribosomal protein L27 CLK_2372 3248979 - 3248653 - | hypothetical protein rplU 3249296 - 3248982 - | ribosomal protein L21 CLK_2374 3250859 - 3249420 - | ribonuclease TERM 4502 3250738 - 3250764 + g 74 -7.4 -3.88971 | opp_overlap 3250742, overlap 3250742 3250756 TTAACCATACCTACA TAAATCTCTCCA ACC TGAGGAGATTTA TTATCTTCTTCTATA CLK_2375 3251611 - 3250898 - | hypothetical protein CLK_2376 3253439 - 3251589 - | radical SAM domain-containing protein TERM 4503 3252557 - 3252580 + g 79 -5.3 -5.26907 | opp_overlap 3252556 3252563, overlap 3252553 TTTTTATTAATTTAT CAGATAGGT CTAATA ACCTTTCTG TTTTCTTTTCTCTTA CLK_2377 3254403 - 3253552 - | putative metalloprotease CLK_2378 3255243 - 3254458 - | M24/M37 family peptidase TERM 4504 3255388 - 3255332 - R 77 -7.9 -4.15703 | gap 1, opp_overlap 3255333 3255334, overlap 3255326 3255334 TTCTATAAATAACAA GATCATATATTGTTAAAAATCCTA AGTTTTTAAA CAGAATTTTTAACAATATATGA-C TTCTAATTCTTAAGG TERM 4505 3255387 - 3255334 - R 95 -11.6 -3.66744 | opp_overlap 3255333 3255334, overlap 3255326 3255332 CTATAAATAACAAGA TCATATATTGTTAAAAATCCTA AGTTTTTAAA CAGAATTTTTAACAATATATGA CTTCTAATTCTTAAG TERM 4506 3255334 - 3255387 + r 73 -8.8 -2.76171 | gap 2, opp_overlap 3255326 3255334 3255332, overlap 3255333 CTATAAATAACAAGA TCATATATTGTTAAAAATCCTAAGTT TTTA AAC--AGAATTTTTAACAATATATGA CTTCTAATTCTTAAG TERM 4507 3255549 - 3255515 - R 86 -4.5 -5.9873 | gap 1, opp_overlap 3255515 TCATTATAAAAAAAA CCTATTTAGTACTAAC TTTT ATTTG-ACTAAATAGG TTTATATACTTTTAA rodA 3256679 - 3255561 - | rod shape-determining protein RodA TERM 4508 3256753 - 3256730 - R 100 -9 -5.05601 | TATCACACACAAAAA GCTATGTACA AATT TATACATAGC CTAAAAAATTTCTTA TERM 4509 3256755 - 3256776 + r 80 -6.1 -5.26158 | AATTTATACATAGCC TAAAAAATT TCTT AATTTTTTA TTTATTTTTTCTTTA minE 3257041 - 3256778 - | cell division topological specificity factor MinE TERM 4510 3257093 - 3257073 - R 71 -7.1 -4.0098 | opp_overlap 3257082, overlap 3257082 CTTTAACCCAAATAA TTTTTTAAA GGA TTTAAAAAA GCCCTGTTCCTTACT minD 3257852 - 3257055 - | septum site-determining protein MinD minC 3258499 - 3257870 - | septum site-determining protein MinC TERM 4511 3258615 - 3258661 + r 72 -8.3 -3.28969 | opp_overlap 3258617, overlap 3258614 3258617 3258658 TATTTTCCATTTTAA AATATCCACACTATCTATTAT ATAAA ATAATTTATAGTGTGGATATA GTTTATATTTATTTA TERM 4512 3258659 - 3258617 - R 100 -10.9 -4.13767 | opp_overlap 3258615 3258614 3258617 3258658 TTTTCCATTTTAAAA TATCCACACTATCTATTAT ATAAA ATAATTTATAGTGTGGATA TAGTTTATATTTATT TERM 4513 3258617 - 3258659 + r 90 -10.9 -3.17739 | opp_overlap 3258617, overlap 3258615 3258614 3258658 TTTTCCATTTTAAAA TATCCACACTATCTATTAT ATAAA ATAATTTATAGTGTGGATA TAGTTTATATTTATT CLK_2383 3261448 - 3258674 - | penicillin-binding protein TERM 4514 3260290 - 3260328 + g 100 -12.6 -3.0634 | opp_overlap 3260297, overlap 3260292 3260297 TTTCTCCTGTATTTA CATCTAATGCTACTGCAG CAC CTCTTGTAGCATTAGATG TATTAACATCGCCTT TERM 4515 3260292 - 3260326 + g 76 -9.4 -3.08813 | opp_overlap 3260297, overlap 3260290 3260297 TCTCCTGTATTTACA TCTAATGCTACTGCAG CAC CTCTTGTAGCATTAGA TGTATTAACATCGCC TERM 4516 3260904 - 3260924 + g 85 -11.3 -2.85987 | overlap 3260901 TTAAAGGTTTCTTCT GGAGTTATT TTT AATAACTCC TCATCTATTTTAGCT TERM 4517 3260973 - 3260992 + g 78 -3 -5.64274 | TCTTCTTTTTCTTTT TTATTTTT ACCT GAAAATAA TTTTTTTGTAACTAC mreD 3261959 - 3261468 - | rod shape-determining protein MreD mreC 3262827 - 3261970 - | rod shape-determining protein MreC TERM 4518 3262779 - 3262806 + g 80 -6.4 -4.85782 | gap 1, opp_overlap 3262779 ATACTAAAAAGGTAA CTGACAGT-ACAA TTA TAGTTACTGTCAG TTTATTTTTAAAGAA CLK_2386 3263844 - 3262834 - | rod shape-determining protein MreB TERM 4519 3263437 - 3263456 + g 74 -9.4 -2.82449 | overlap 3263420 3263436 GATAGCTGCTGCCAT TGGTTCTT CCAT AAGAACCA CTTCTCTTGCTCCAG CLK_2387 3264559 - 3263873 - | RadC family DNA repair protein maf 3265158 - 3264574 - | maf protein CLK_2389 3265431 - 3265174 - | hypothetical protein TERM 4520 3265543 - 3265520 - R 74 -4.7 -5.26875 | gap 1, opp_overlap 3265521 3265523, overlap 3265523 TTTTTAAGCAAAAAA TAAGCATCTG AAAAA CAGATGC-TA TTTATTATTTACTTC TERM 4521 3265521 - 3265543 + r 74 -6.3 -4.62669 | opp_overlap 3265520 3265523, overlap 3265523 TTTTAAGCAAAAAAT AAGCATCTG AAAAA CAGATGCTA TTTATTATTTACTTC TERM 4522 3265523 - 3265541 + r 81 -8.9 -3.89937 | opp_overlap 3265520 3265523, overlap 3265521 TTAAGCAAAAAATAA GCATCTG AAAAA CAGATGC TATTTATTATTTACT TERM 4523 3265541 - 3265523 - R 89 -8.9 -4.72473 | opp_overlap 3265523 3265521, overlap 3265520 TTAAGCAAAAAATAA GCATCTG AAAAA CAGATGC TATTTATTATTTACT CLK_2390 3266242 - 3265541 - | hypothetical protein TERM 4524 3266413 - 3266368 - R 90 -5.9 -5.96894 | gap 1, opp_overlap 3266386, overlap 3266377 ACTTAAATAAAAAAA GCTATCAAATTTAAAATATTAT AAT ATAATACTCTAAACTC-ATAGC TTTTTAATTTAAAAA TERM 4525 3266448 - 3266434 - R 76 -4.4 -5.29885 | opp_overlap 3266434 AATTTAAAAACAAAA TTTATA TTT TATAAA ATTCTATCCAAAATT CLK_2391 3267007 - 3266468 - | hypothetical protein TERM 4526 3266531 - 3266542 + g 71 -3 -5.23943 | TATTTCATTACTATT TATG TTAT CATA TTTATTTTTTTCATA TERM 4527 3266762 - 3266733 - G 74 -3.1 -5.42259 | gap 1, opp_overlap 3266740, overlap 3266735 3266740 CGATCTTTAAAAAAA TATAGAATCCAAAT TTC ATTTGGATTTT-TA AATTCTGCTCTTCCC TERM 4528 3266756 - 3266740 - G 79 -8.1 -3.97983 | opp_overlap 3266740, overlap 3266735 3266733 TAAAAAAATATAGAA TCCAAAT TTC ATTTGGA TTTTTAAATTCTGCT TERM 4529 3266740 - 3266756 + g 87 -8.1 -4.78752 | opp_overlap 3266740 3266735 3266733 TAAAAAAATATAGAA TCCAAAT TTC ATTTGGA TTTTTAAATTCTGCT CLK_2392 3267151 - 3267038 - | hypothetical protein TERM 4530 3267140 - 3267093 - G 100 -16.1 -4.20783 | opp_overlap 3267100 3267102 3267106, overlap 3267106 ATTTCACTTAATAAA TTTAACATATAAAGGCCCATT AAAATA AATGGACCTTTATATATTAAA TCATACCTCACATAC TERM 4531 3267100 - 3267133 + g 78 -9.8 -3.10975 | opp_overlap 3267093 3267106, overlap 3267102 3267106 TTAATAAATTTAACA TATAAAGGCCCATT AAAATA AATGGACCTTTATA TATTAAATCATACCT TERM 4532 3267127 - 3267106 - G 74 -6.6 -4.22414 | opp_overlap 3267102 3267100 3267106, overlap 3267093 AATTTAACATATAAA GGCCCATT AAAATA AATGGACC TTTATATATTAAATC TERM 4533 3267570 - 3267585 + G 72 -7.6 -3.60094 | opp_overlap 3267567 TAAAACAAATATCTT TTCACC TAAA GGTGAA TTGTGCTTATGTGTA TERM 4534 3267770 - 3267754 - g 73 -3.8 -5.24531 | opp_overlap 3267754 ACTCTTGAGAAAAAA TTATGT TTATT ACATAA CTTTTCTAAAGCGTT CLK_2393 3267391 - 3267945 + | hypothetical protein TERM 4535 3267964 - 3268006 + T 87 -11 -3.09015 | opp_overlap 3267962 3267974, overlap 3267974 TATTCACACTATAGT AAATAAAAAACTTCATCT GCTAAAA AGATGAAGTTTTTTATTA TTCCATAGCTATCAA TERM 4536 3267996 - 3267974 - T 90 -6.4 -5.69793 | opp_overlap 3267964 3267974, overlap 3267962 ATAGTAAATAAAAAA CTTCATCT GCTAAAA AGATGAAG TTTTTTATTATTCCA TERM 4537 3267974 - 3267996 + T 90 -6.4 -5.64873 | opp_overlap 3267974 3267962, overlap 3267964 ATAGTAAATAAAAAA CTTCATCT GCTAAAA AGATGAAG TTTTTTATTATTCCA pheB 3268441 - 3268004 - | ACT domain-containing protein PheB TERM 4538 3268686 - 3268731 + r 77 -9.1 -3.37299 | opp_overlap 3268682 3268693 3268712, overlap 3268684 3268687 CTCCTAAGAAGTCCC CTAATAAGCTTCAGAGGAAGT AGAA ACTCCCTCTGAAGCTTAGAAA TCTGTTTATAGTATA TERM 4539 3268687 - 3268730 + r 90 -12.6 -2.61656 | opp_overlap 3268682 3268693 3268712, overlap 3268686 3268684 TCCTAAGAAGTCCCC TAATAAGCTTCAGAGGAAGT AGAA ACTCCCTCTGAAGCTTAGAA ATCTGTTTATAGTAT TERM 4540 3268724 - 3268693 - R 100 -18.2 -3.62522 | opp_overlap 3268687 3268686 3268684, overlap 3268682 3268712 GAAGTCCCCTAATAA GCTTCAGAGGAAGT AGAA ACTCCCTCTGAAGC TTAGAAATCTGTTTA TERM 4541 3268770 - 3268789 + r 86 -9.4 -4.18019 | opp_overlap 3268770 TATAATATAAAAAAA GAGAAGTA TAAA TACTTCTC TTTATATCTAATTAT TERM 4542 3268789 - 3268770 - R 100 -9.4 -5.84432 | opp_overlap 3268770 TATAATATAAAAAAA GAGAAGTA TAAA TACTTCTC TTTATATCTAATTAT TERM 4543 3269394 - 3269376 - R 72 -7.6 -3.57627 | opp_overlap 3269375, overlap 3269375 TTTTTATATAAAAAT CTATATAT ATT ATATATAG CCTTTACCTTTTTTA CLK_2395 3269902 - 3269357 - | transglycosylase SLT domain-containing protein coaE 3270558 - 3269920 - | dephospho-CoA kinase polA 3273197 - 3270570 - | DNA polymerase I aroC 3274339 - 3273215 - | chorismate synthase TERM 4544 3274462 - 3274492 + r 100 -14.4 -2.91239 | opp_overlap 3274457 3274462 3274467, overlap 3274464 3274467 AGTATAGAAATTTAA TATAAGATACTAAT TTA ATTAGTATCTTATA TATCTAGAATATATA TERM 4545 3274492 - 3274462 - R 100 -14.4 -3.36096 | opp_overlap 3274462 3274464 3274467, overlap 3274457 3274467 AGTATAGAAATTTAA TATAAGATACTAAT TTA ATTAGTATCTTATA TATCTAGAATATATA TERM 4546 3274464 - 3274490 + r 93 -12.6 -3.00498 | opp_overlap 3274462 3274457 3274467, overlap 3274462 3274467 TATAGAAATTTAATA TAAGATACTAAT TTA ATTAGTATCTTA TATATCTAGAATATA TERM 4547 3274467 - 3274487 + r 89 -9.9 -3.64466 | opp_overlap 3274467 3274462 3274457, overlap 3274464 3274462 AGAAATTTAATATAA GATACTAAT TTA ATTAGTATC TTATATATCTAGAAT TERM 4548 3274487 - 3274467 - R 90 -9.9 -3.74475 | opp_overlap 3274464 3274462 3274467, overlap 3274462 3274457 AGAAATTTAATATAA GATACTAAT TTA ATTAGTATC TTATATATCTAGAAT CLK_2399 3275250 - 3274480 - | putative N-acetylmuramoyl-L-alanine amidase TERM 4549 3274527 - 3274508 - G 73 -8.6 -3.15459 | overlap 3274504 3274502 TATCTAGAATATATA TATCCCCC ATGT GGAGGATA ATACACATGCATCCA TERM 4550 3275388 - 3275408 + r 79 -8.3 -4.14598 | opp_overlap 3275388 TTTTCATAATAAAAA GAGCAGG TTTTACT CCTGCTC TTTACTTTCCTTAAC TERM 4551 3275408 - 3275388 - R 95 -8.3 -5.18726 | opp_overlap 3275388 TTTTCATAATAAAAA GAGCAGG TTTTACT CCTGCTC TTTACTTTCCTTAAC CLK_2400 3275591 - 3275397 - | hypothetical protein TERM 4552 3275493 - 3275475 - G 70 -6.1 -4.11623 | opp_overlap 3275474 3275477 TACTATTAAAGTAAA TACAGAA AGAAA TTCTGTA CTTGATAGGCTCCCC CLK_2401 3275864 - 3275610 - | hypothetical protein TERM 4553 3275939 - 3275970 + r 80 -6.8 -5.0538 | gap 1, opp_overlap 3275939 TATATTACAAAAAAA TTAGAGCAATAGAAA TAA TATCTAT-GCTCTAA TTTTTTGCAATAAAA TERM 4554 3275970 - 3275939 - R 90 -6.8 -5.69473 | gap 1, opp_overlap 3275939 TATATTACAAAAAAA TTAGAGCAATAGAAA TAA TATCTAT-GCTCTAA TTTTTTGCAATAAAA TERM 4555 3276001 - 3275988 - R 72 -3.8 -5.4505 | TTTTGCAATAAAAAA GACC TATTAT GGTC ATCTAATTTATCTTT CLK_2402 3276824 - 3276015 - | hypothetical protein CLK_2403 3278219 - 3276876 - | hypothetical protein CLK_2404 3279153 - 3278233 - | hypothetical protein CLK_2405 3279862 - 3279155 - | hypothetical protein CLK_2406 3280908 - 3280132 - | hypothetical protein CLK_2407 3281734 - 3280946 - | hypothetical protein TERM 4556 3281194 - 3281206 + g 73 -3.5 -5.252 | ATCCATATTTGTCTA TTAAA TTA TTTAA TTTTTTATCACCATC TERM 4557 3281241 - 3281267 + g 70 -5.4 -4.64486 | overlap 3281237 3281262 TTCCCTAAATTTATA TAATTATTATTT ATT GAATAGTAATTA TTATTTTGTTTTAAT CLK_2408 3282728 - 3281748 - | hypothetical protein CLK_2409 3283513 - 3282731 - | hypothetical protein TERM 4558 3282954 - 3282979 + g 71 -2.1 -5.38326 | gap 1, overlap 3282948 3282961 3282961 CCATTTTTATAAAAT TCAGATT-TTAT TGT ATAATAATTTGA TTTTTGTTTGATTAA TERM 4559 3283603 - 3283579 - R 70 -2.9 -5.45802 | TTTCTAAAACAAAAA CTAAGTGTC CCAAAAT AACACTCAG CTAATAATTAATTTT CLK_2410 3284689 - 3283604 - | hypothetical protein TERM 4560 3284364 - 3284385 + g 83 -10.3 -3.452 | opp_overlap 3284362, overlap 3284383 ACTTTAAAATCTACT GTGTTAACA GGGA TGTTAACAC TTCTAGGTGTTTCGG CLK_2411 3285699 - 3284701 - | hypothetical protein TERM 4561 3285666 - 3285641 - G 89 -9.1 -4.29953 | overlap 3285638 AAATCAGCAAAAGAA GAAGCCAAGAA AAAA TTCTCAGCTTC TAATAATCCATTTTT CLK_2412 3285965 - 3285711 - | hypothetical protein CLK_2413 3287866 - 3285971 - | hypothetical protein TERM 4562 3287167 - 3287180 + g 72 -2.5 -5.48623 | GATTGGATCTATCTA TAAAT CTAT ATTTA TTTTTATTTATATTT CLK_2414 3289134 - 3287881 - | hypothetical protein CLK_2415 3290137 - 3289157 - | hypothetical protein TERM 4563 3289910 - 3289923 + g 70 -3.9 -5.07275 | overlap 3289902 TATACCTTTCACCTT TTGAA TGCC TTCAA TTTTTCTGTATATAA CLK_2416 3291497 - 3290139 - | hypothetical protein TERM 4564 3290873 - 3290892 + g 76 -3.6 -5.48825 | TATATTCACTTTCTC CTATAGCT AAAA ATCTATAG TTTTTTTCACTAGTG TERM 4565 3291339 - 3291349 + g 70 -4 -4.85894 | TAAATCATTATAATC TACA CCT TGTA TTTTATCTTTAATTT CLK_2417 3291853 - 3291512 - | hypothetical protein CLK_2418 3292951 - 3291866 - | hypothetical protein CLK_2419 3293372 - 3292938 - | hypothetical protein CLK_2420 3294950 - 3293385 - | phage protein TERM 4566 3295122 - 3295088 - R 78 -4.5 -5.45813 | opp_overlap 3295091 TATTAAAAAAGAAAA GGTTAAAAACTAA TTTTTATTG TTAGTATTTAACC ATTGAATTACATCTT CLK_2421 3295321 - 3295097 - | hypothetical protein CLK_2422 3295715 - 3295299 - | hypothetical protein TERM 4567 3295630 - 3295574 - G 81 -8.3 -4.18197 | opp_overlap 3295574, overlap 3295592 3295598 ACTTGTTAGGTAAAA TTCCTTTTCGTACTAAATTTAAAAGAG ATA CTCTTTTAACTCTAGCATTAAAAGGTA TCCCTTGCCCAAATT TERM 4568 3295612 - 3295592 - G 76 -9.9 -2.83403 | opp_overlap 3295574, overlap 3295574 3295598 CTTTTCGTACTAAAT TTAAAAGAG ATA CTCTTTTAA CTCTAGCATTAAAAG CLK_2423 3296617 - 3295730 - | hypothetical protein TERM 4569 3296451 - 3296463 + g 73 -3.5 -5.3104 | ATATCATCTGTTTCA TTTAT TCC ATAAA TTTTATTTTTAATCC CLK_2424 3297041 - 3296622 - | hypothetical protein TERM 4570 3296781 - 3296769 - G 76 -6.3 -4.52857 | opp_overlap 3296769 3296767 ATTCTCTACATAAAA TTCCA TAG TGGAA TATTGATCCATAGGG CLK_2425 3297394 - 3297047 - | hypothetical protein CLK_2426 3297764 - 3297399 - | hypothetical protein TERM 4571 3297559 - 3297530 - G 73 -8.2 -3.48036 | opp_overlap 3297530 3297529, overlap 3297534 CATCATTATAACTAA TTAATAATTTGT CATTAT ACAAATTATTAA CTTCTAATCCCTCTA TERM 4572 3297672 - 3297682 + g 72 -2.6 -5.4659 | AAAAGCATTTTTACC TATT CTT AATA TTTTTATTTCTCTTA CLK_2427 3298048 - 3297764 - | hypothetical protein CLK_2428 3298185 - 3298054 - | hypothetical protein CLK_2429 3298501 - 3298367 - | hypothetical protein CLK_2430 3299074 - 3298553 - | hypothetical protein CLK_2431 3299507 - 3299193 - | hypothetical protein CLK_2432 3300391 - 3299564 - | putative DNA replication protein CLK_2433 3301259 - 3300354 - | putative phage replisome organizer CLK_2434 3301565 - 3301353 - | putative DNA-binding protein CLK_2435 3301835 - 3301617 - | DNA-binding protein CLK_2436 3302027 - 3302437 + | DNA-binding protein CLK_2437 3302737 - 3302886 + | hypothetical protein TERM 4573 3303427 - 3303403 - f 100 -6.5 -6.09196 | TTTAAAATAAAAAAA GACTTTGGA AAACTAA TCCAAAGCC CTCAAAGTTATATCT TERM 4574 3303491 - 3303505 + F 72 -8.6 -3.12847 | CGAAGTTACCCTCGA CGGATT TTG AATCCG TTGCGTCTGCCAATT TERM 4575 3305091 - 3305044 - g 74 -5.2 -4.88687 | opp_overlap 3305051, overlap 3305048 TTAAAGAAAAAATAA TAAATAATTTAAAGATAAAAAC TAAT GTATTTAGCTTTAAATTATTCC AAACATTGTTTACTT TERM 4576 3305087 - 3305048 - g 90 -8.2 -4.86216 | opp_overlap 3305051, overlap 3305044 AGAAAAAATAATAAA TAATTTAAAGATAAAAAC TAAT GTATTTAGCTTTAAATTA TTCCAAACATTGTTT CLK_2439 3303963 - 3305450 + | putative alginate O-acetyltransferase AlgI TERM 4577 3306888 - 3306914 + G 71 -9 -2.88571 | opp_overlap 3306874 3306896, overlap 3306887 3306888 ATAGATAGTGTATAC TTATCTAATAAT TTA ATTATTAGATAG CTTATATTTAAAACC CLK_2440 3305463 - 3306914 + | hypothetical protein TERM 4578 3306993 - 3307038 + T 84 -9.3 -3.69216 | opp_overlap 3306999, overlap 3306990 3306994 3307001 TTATAATCTATGAAT TCAAAAGAGATTAGATATATA TAGG TATATATCTAATCTCTTAGGC TGTTTTAACTAACAA TERM 4579 3306994 - 3307037 + T 91 -12.8 -2.81208 | opp_overlap 3306999, overlap 3306993 3306990 3307001 TATAATCTATGAATT CAAAAGAGATTAGATATATA TAGG TATATATCTAATCTCTTAGG CTGTTTTAACTAACA TERM 4580 3307032 - 3306999 - T 100 -15.7 -4.30014 | opp_overlap 3306994 3306993 3306990 3307001 TCTATGAATTCAAAA GAGATTAGATATATA TAGG TATATATCTAATCTC TTAGGCTGTTTTAAC TERM 4581 3307001 - 3307030 + T 93 -12.5 -3.12289 | opp_overlap 3306999, overlap 3306994 3306993 3306990 TATGAATTCAAAAGA GATTAGATATATA TAGG TATATATCTAATC TCTTAGGCTGTTTTA CLK_2441 3307288 - 3307085 - | small, acid-soluble spore protein TERM 4582 3307314 - 3307349 + r 75 -6.4 -4.50902 | opp_overlap 3307316, overlap 3307315 3307316 3307318 3307321 3307323 CTCCTTTTATCTTTA AATATATTACAAACTT AATT AAGTTTGTAATATAAG TTTGTGTTATTTTTT TERM 4583 3307315 - 3307348 + r 85 -9.9 -3.26881 | opp_overlap 3307316, overlap 3307314 3307316 3307318 3307321 3307323 TCCTTTTATCTTTAA ATATATTACAAACTT AATT AAGTTTGTAATATAA GTTTGTGTTATTTTT TERM 4584 3307316 - 3307347 + r 91 -13.4 -2.53688 | opp_overlap 3307316, overlap 3307315 3307314 3307318 3307321 3307323 CCTTTTATCTTTAAA TATATTACAAACTT AATT AAGTTTGTAATATA AGTTTGTGTTATTTT TERM 4585 3307347 - 3307316 - R 100 -13.4 -3.57144 | opp_overlap 3307316 3307315 3307314 3307318 3307321 3307323 CCTTTTATCTTTAAA TATATTACAAACTT AATT AAGTTTGTAATATA AGTTTGTGTTATTTT TERM 4586 3307318 - 3307345 + r 88 -11.6 -2.77901 | opp_overlap 3307316, overlap 3307316 3307315 3307314 3307321 3307323 TTTTATCTTTAAATA TATTACAAACTT AATT AAGTTTGTAATA TAAGTTTGTGTTATT CLK_2442 3307613 - 3307473 - | hypothetical protein TERM 4587 3307809 - 3307780 - R 84 -8.7 -4.35348 | opp_overlap 3307774 ATAACATAAGATAAA TATGAGTGTACTA TAAA TAGTGCACCCATA ATAAACTATATATTT CLK_2443 3307971 - 3307852 - | hypothetical protein CLK_2444 3308318 - 3308028 - | hypothetical protein TERM 4588 3308322 - 3308351 + r 100 -12.3 -3.98172 | CATTATTTCCATATT TATCCCCCCATAA AATT TTATGAGGGGATA TTTATAACTATTACT CLK_2445 3308587 - 3308459 - | hypothetical protein CLK_2446 3308759 - 3309187 + | sigma-E factor regulator TERM 4589 3309224 - 3309181 - T 100 -15.8 -3.21062 | gap 1, opp_overlap 3309177 3309181 3309185 3309190, overlap 3309183 3309185 3309190 GACACGAATACTTAA TAGATAAAATAAGGAAAGCGC ATA GCACTTTCCTTATTTTAT-TA ATCTTCTTTTTCTAT TERM 4590 3309181 - 3309225 + T 100 -13.9 -3.90582 | opp_overlap 3309181 3309183 3309185 3309190, overlap 3309177 3309185 3309190 GACACGAATACTTAA TAGATAAAATAAGGAAAGCGC ATA GCACTTTCCTTATTTTATTAA TCTTCTTTTTCTATT TERM 4591 3309223 - 3309183 - T 100 -16.5 -3.16217 | opp_overlap 3309181 3309177 3309185 3309190, overlap 3309181 3309185 3309190 CACGAATACTTAATA GATAAAATAAGGAAAGCGC ATA GCACTTTCCTTATTTTATT AATCTTCTTTTTCTA TERM 4592 3309185 - 3309221 + T 100 -16.9 -3.56246 | opp_overlap 3309185 3309183 3309181 3309190, overlap 3309181 3309177 3309190 CGAATACTTAATAGA TAAAATAAGGAAAGCGC ATA GCACTTTCCTTATTTTA TTAATCTTCTTTTTC TERM 4593 3309221 - 3309185 - T 100 -19.1 -3.136 | opp_overlap 3309181 3309177 3309185 3309190, overlap 3309183 3309181 3309190 CGAATACTTAATAGA TAAAATAAGGAAAGCGC ATA GCACTTTCCTTATTTTA TTAATCTTCTTTTTC TERM 4594 3309216 - 3309190 - T 100 -14.6 -4.68545 | opp_overlap 3309185 3309181 3309177 3309190, overlap 3309185 3309183 3309181 ACTTAATAGATAAAA TAAGGAAAGCGC ATA GCACTTTCCTTA TTTTATTAATCTTCT TERM 4595 3309190 - 3309216 + T 100 -12.4 -4.79657 | opp_overlap 3309190 3309185 3309183 3309181, overlap 3309185 3309181 3309177 ACTTAATAGATAAAA TAAGGAAAGCGC ATA GCACTTTCCTTA TTTTATTAATCTTCT aspS 3311003 - 3309222 - | aspartyl-tRNA synthetase TERM 4596 3310074 - 3310092 + g 73 -9 -3.20126 | overlap 3310089 TTTAAATTCTGAATT TTTAACAG CTT CTGTTAAA TCATTTATTTCCATT TERM 4597 3310457 - 3310474 + g 77 -5.5 -4.91459 | overlap 3310472 GAACTAAATAATCAC GTGCTCC TTCT GGGGTAC TTTTTGTAAGTATTG hisS 3312291 - 3311044 - | histidyl-tRNA synthetase CLK_2449 3313740 - 3312310 - | radical SAM domain-containing protein TERM 4598 3313203 - 3313185 - G 84 -8.9 -4.32177 | overlap 3313181 CCATTTCATAATAAA GAGCCTT TAAAT AAGGCTC CACTAAGTTCTTACA CLK_2450 3314377 - 3313778 - | metallo-beta-lactamase family protein TERM 4599 3313993 - 3314013 + g 72 -6.7 -4.12901 | CTAAAAAACTCATTC CACCTGGAC TAT GTCCTGGCG TTTCTATAGCTTTTA dtd 3314887 - 3314438 - | D-tyrosyl-tRNA(Tyr) deacylase relA 3317101 - 3314930 - | GTP pyrophosphokinase TERM 4600 3317127 - 3317147 + r 82 -11.2 -2.53848 | opp_overlap 3317127, overlap 3317126 3317125 CTCCTCAAAATCAAA GGCTGGTT CATAA AACCAGCC AATATTTTTTATTTC TERM 4601 3317147 - 3317127 - R 100 -11.9 -4.19735 | opp_overlap 3317127 3317126 3317125 CTCCTCAAAATCAAA GGCTGGTTC ATA AAACCAGCC AATATTTTTTATTTC apt 3317744 - 3317226 - | adenine phosphoribosyltransferase TERM 4602 3317494 - 3317504 + g 86 -3.2 -5.84381 | CTAATAGTCTCATAT GGTA ATT TGCC TTTTTTTCTTACTGG CLK_2454 3318731 - 3317853 - | DHH domain-containing protein TERM 4603 3318944 - 3318916 - R 88 -11.9 -2.93252 | opp_overlap 3318921, overlap 3318921 ATGCTTTAATAATTA GAAAATCCAAGCT TAA AGCTTGGATTTTT ATACAAATATACTAA TERM 4604 3318939 - 3318921 - R 100 -11.8 -4.61747 | opp_overlap 3318921, overlap 3318916 TTAATAATTAGAAAA TCCAAGCT TAA AGCTTGGA TTTTTATACAAATAT TERM 4605 3318921 - 3318939 + r 100 -11.8 -4.84761 | opp_overlap 3318921 3318916 TTAATAATTAGAAAA TCCAAGCT TAA AGCTTGGA TTTTTATACAAATAT secF 3319823 - 3318960 - | protein-export membrane protein SecF secD 3321093 - 3319825 - | protein-export membrane protein SecD TERM 4606 3320320 - 3320302 - G 71 -2.4 -5.4182 | overlap 3320304 AAGCATAAATAAAAA TACAAGTG ATA CACCTACA ACTCCTGCCTTTACA TERM 4607 3321130 - 3321176 + r 77 -4.8 -5.28831 | opp_overlap 3321136, overlap 3321133 AGTTTATTATAAGAA TAAGAACATAATTTATTATG TTTGCTT TATAATAAATTATGTACTAA TTTTCTTTTATTAAT CLK_2457 3322554 - 3321187 - | radical SAM domain-containing protein TERM 4608 3322698 - 3322677 - R 100 -11.7 -4.36903 | opp_overlap 3322677 TTCAGTAAATATAAA GCAGTAACT TTAA AGTTACTGC TTTTAGCTTATATTA TERM 4609 3322677 - 3322698 + r 100 -11.7 -4.35874 | opp_overlap 3322677 TTCAGTAAATATAAA GCAGTAACT TTAA AGTTACTGC TTTTAGCTTATATTA CLK_2458 3322848 - 3322711 - | hypothetical protein CLK_2459 3323306 - 3322938 - | hypothetical protein TERM 4610 3323304 - 3323355 + g 85 -11.2 -2.52776 | gap 1, opp_overlap 3323304 3323306 3323311, overlap 3323303 3323301 3323311 ATTTTTTTTATTCAA CATAAAACACCCCC-TCATATTTAG TAT TTATGTATTAAGGGGGTGTTTTATG ATAATTTATTTATCC TERM 4611 3323355 - 3323304 - G 81 -10.5 -3.05463 | gap 1, opp_overlap 3323304 3323303 3323301 3323311, overlap 3323306 3323311 ATTTTTTTTATTCAA CATAAAACACCCCCTC-ATATTTA GTATT TATGTATTAAGGGGGTGTTTTATG ATAATTTATTTATCC yajC 3323696 - 3323361 - | preprotein translocase, YajC subunit TERM 4612 3323741 - 3323763 + r 82 -2.1 -6.22691 | TAATTTATTTTACTA CTTTTCA CTTTAATTT TGAAAAG TTTTTTTTATTATTA TERM 4613 3323815 - 3323835 + r 75 -7.1 -4.33851 | opp_overlap 3323815 GATATATTTATATTA TTTTATATT TAA AATATAAAA TTTATTATAGCGTTT tgt 3325007 - 3323877 - | queuine tRNA-ribosyltransferase queA 3326088 - 3325063 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase ruvB 3327150 - 3326122 - | holliday junction DNA helicase RuvB ruvA 3327763 - 3327170 - | holliday junction DNA helicase RuvA TERM 4614 3327415 - 3327438 + g 75 -4.6 -5.14563 | GAGCTGTTTTTTTAC CTATACCAGG GGCT CTTGTTATAG TTTTTTCATCCCCCA TERM 4615 3327873 - 3327840 - R 100 -9.9 -5.64006 | gap 1, opp_overlap 3327840 3327842 3327872, overlap 3327842 3327872 ATTCAACTAAAAAAA CATAGCTTGCATATTA GTG TAA-ATGCAAGCTATA TTTCCAATATTAGTT TERM 4616 3327840 - 3327873 + r 73 -7.7 -3.67918 | gap 1, opp_overlap 3327840 3327842 3327872, overlap 3327842 3327872 ATTCAACTAAAAAAA CATAGCTTGCATATTA GTG TAA-ATGCAAGCTATA TTTCCAATATTAGTT TERM 4617 3327871 - 3327842 - R 100 -10.3 -4.45473 | gap 1, opp_overlap 3327840 3327842, overlap 3327840 TCAACTAAAAAAACA TAGCTTGCATATTA GTG TAA-ATGCAAGCTA TATTTCCAATATTAG TERM 4618 3327842 - 3327871 + r 90 -10.3 -3.41302 | gap 1, opp_overlap 3327842 3327840, overlap 3327840 TCAACTAAAAAAACA TAGCTTGCATATTA GTG TAA-ATGCAAGCTA TATTTCCAATATTAG CLK_2465 3328556 - 3327945 - | hypothetical protein TERM 4619 3329068 - 3329104 + r 85 -11 -2.87931 | opp_overlap 3329071 3329078, overlap 3329071 3329078 TTGTGAACTAATATT TAAGCGCAAAGTAAAC AGGAC GTTTACTTTGCGCTGC TCTGTAGGACGTAGC TERM 4620 3329071 - 3329101 + r 100 -17.1 -2.6927 | opp_overlap 3329071 3329078, overlap 3329068 3329078 TGAACTAATATTTAA GCGCAAAGTAAAC AGGAC GTTTACTTTGCGC TGCTCTGTAGGACGT TERM 4621 3329101 - 3329071 - R 100 -17.8 -3.21806 | opp_overlap 3329071 3329068 3329078, overlap 3329078 TGAACTAATATTTAA GCGCAAAGTAAACA GGA CGTTTACTTTGCGC TGCTCTGTAGGACGT CLK_2466 3329994 - 3329254 - | hypothetical protein CLK_2467 3330783 - 3330133 - | hypothetical protein TERM 4622 3330272 - 3330282 + g 72 -4 -5.09685 | opp_overlap 3330272 ACTTCACAAAATATA GTTA AAT TAAC TTTTTCTGTATATTC CLK_2468 3331461 - 3330799 - | HEAT repeat-containing PBS lyase TERM 4623 3331504 - 3331558 + r 77 -4.8 -5.35459 | opp_overlap 3331515, overlap 3331506 CTCAATATAAATCTT TTTTTAATTAATATAAAAATTCAT AAGAGCA ATGAATTTTTATATTAATTTAATC TTTTTTGTAATATAT TERM 4624 3331506 - 3331556 + r 100 -11.8 -4.30057 | opp_overlap 3331515, overlap 3331504 CAATATAAATCTTTT TTTAATTAATATAAAAATTCAT AAGAGCA ATGAATTTTTATATTAATTTAA TCTTTTTTGTAATAT TERM 4625 3331547 - 3331515 - R 74 -8.1 -3.33696 | opp_overlap 3331506 3331504 TCTTTTTTTAATTAA TATAAAAATTCAT AAGAGCA ATGAATTTTTATA TTAATTTAATCTTTT CLK_2469 3332966 - 3331548 - | GntR family transcriptional regulator TERM 4626 3331685 - 3331673 - G 71 -3.3 -5.252 | opp_overlap 3331674, overlap 3331674 GATTTTTATAAAAAA GCACC CCT GGTGT AATTAAAACTTTATT TERM 4627 3332737 - 3332752 + g 86 -6.2 -5.48063 | TCTTTTTTCTTTGCA TAGGTA CCAC TACCTA TTTTTTGTATTGCAT CLK_2470 3334146 - 3333253 - | nucleotidyltransferase domain-containing protein CLK_2471 3334517 - 3334296 - | hypothetical protein TERM 4628 3334643 - 3334673 + r 100 -8.5 -5.65678 | opp_overlap 3334643 TTCTTTTTAAAAAAA TAAGCTATAAATC CAAAA GATTTACAGCTTA TTTTTTATATTTTAT TERM 4629 3334673 - 3334643 - R 100 -11.4 -5.40072 | opp_overlap 3334643 TTCTTTTTAAAAAAA TAAGCTATAAATCC AAA AGATTTACAGCTTA TTTTTTATATTTTAT CLK_2472 3334851 - 3334693 - | rubredoxin CLK_2473 3336765 - 3334981 - | GTP-binding protein hpt 3336907 - 3337431 + | hypoxanthine phosphoribosyltransferase TERM 4630 3337438 - 3337460 + T 100 -10 -5.35815 | opp_overlap 3337438 AAAGAATAGTAAAAA TGTAAAGCTT ATA AGGCTTTACA TTTTTGTTTAATCTC TERM 4631 3337460 - 3337438 - T 90 -7.8 -4.94672 | opp_overlap 3337438 AAAGAATAGTAAAAA TGTAAAGCTT ATA AGGCTTTACA TTTTTGTTTAATCTC yunB 3338076 - 3337468 - | sporulation protein YunB TERM 4632 3338096 - 3338083 - H 70 -2.5 -5.57729 | opp_overlap 3338083 AAATAACATAAAAAA TATTA ATAT TAATA TAATTCTAATCTTTT TERM 4633 3338328 - 3338314 - g 100 -5.6 -6.47325 | opp_overlap 3338313 3338314 AAAAAAGAAAAAAAA GCGCAA ATC TAGCGC CTTTAAAATAATACT TERM 4634 3338681 - 3338667 - g 76 -2.8 -5.62288 | CTAATAAAATAAAAA GGAGTT CTA AACTTC AGGGAGCTTCTACTC TERM 4635 3340604 - 3340585 - g 85 -3.6 -5.8187 | overlap 3340588 TACTGAAGAAAAAAA TAACTCTA ATAC TAGAGATA AAAATAAAGATAAGG TERM 4636 3340601 - 3340588 - g 74 -5.3 -4.96435 | overlap 3340585 TGAAGAAAAAAATAA CTCTA ATAC TAGAG ATAAAAATAAAGATA CLK_2476 3338294 - 3340789 + | 1A family penicillin-binding protein TERM 4637 3340788 - 3340829 + T 100 -14.1 -4.19953 | opp_overlap 3340793 3340802, overlap 3340793 3340802 ATAACAACAAACAAT AAAAAGAATAAAAACTCCT TTTG GGGAGTTTTTATTCTTTTG TTTTAGGATTAAATA TERM 4638 3340793 - 3340824 + T 100 -14 -5.10163 | opp_overlap 3340793 3340802, overlap 3340788 3340802 AACAAACAATAAAAA GAATAAAAACTCCT TTTG GGGAGTTTTTATTC TTTTGTTTTAGGATT TERM 4639 3340824 - 3340793 - T 100 -13.3 -5.44198 | opp_overlap 3340793 3340788 3340802, overlap 3340802 AACAAACAATAAAAA GAATAAAAACTCC TTTTGG GGAGTTTTTATTC TTTTGTTTTAGGATT TERM 4640 3340815 - 3340802 - T 75 -3.8 -5.51353 | opp_overlap 3340793 3340788 3340802, overlap 3340793 TAAAAAGAATAAAAA CTCC TTTTGG GGAG TTTTTATTCTTTTGT TERM 4641 3340802 - 3340815 + T 78 -4.5 -5.47964 | opp_overlap 3340802 3340793, overlap 3340793 3340788 TAAAAAGAATAAAAA CTCCT TTTG GGGAG TTTTTATTCTTTTGT CLK_2477 3341175 - 3340819 - | SpoVA family protein CLK_2478 3342199 - 3341192 - | stage V sporulation protein AD family protein TERM 4642 3342118 - 3342144 + g 74 -6.6 -4.29139 | opp_overlap 3342130, overlap 3342133 GCCCCTCTCCCTCTT TAGGTCCAACTA TAC TAGTAGTACCTA TTATTTTGGGTTTAC CLK_2479 3342677 - 3342222 - | SpoVA family protein TERM 4643 3342879 - 3342858 - R 85 -5.9 -5.59502 | opp_overlap 3342858, overlap 3342851 CAAAAAACTAAAAAA CCATATGAA AATA TACATATGG TTTTTATACAGTAAG TERM 4644 3342858 - 3342879 + r 76 -5.9 -4.85599 | opp_overlap 3342858 3342851 CAAAAAACTAAAAAA CCATATGAA AATA TACATATGG TTTTTATACAGTAAG sigF 3343638 - 3342883 - | RNA polymerase sigma-F factor spoIIAB 3344079 - 3343657 - | anti-sigma F factor spoIIAA 3344431 - 3344096 - | anti-sigma F factor antagonist CLK_2483 3344532 - 3344777 + | spermidine synthase (putrescine aminopropyltransferase)(papt) (spdsy) CLK_2484 3346648 - 3344915 - | modification methylase family protein TERM 4645 3347345 - 3347335 - g 70 -4 -4.91429 | AAAGGGCAAAGAAAA CTTT AAA AAAG AATTTACTGTAGTTG CLK_2485 3346715 - 3347689 + | polysaccharide deacetylase family protein TERM 4646 3347721 - 3347758 + T 72 -5.1 -4.98531 | gap 1, opp_overlap 3347721 TTTTTATAATAAAAA GCTATGAGTTTAACAATA TAA TATTGC-AAATTCGTAGC TTTTTAATTTAAAAA CLK_2486 3348526 - 3347780 - | WecB/TagA/CpsF family glycosyl transferase TERM 4647 3348723 - 3348671 - R 86 -9.2 -3.85698 | gap 1, opp_overlap 3348662 3348672 3348673 3348675 3348683, overlap 3348673 3348676 GCTGCTCTCTATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAAATC-G TTATCCAGGGACGCA TERM 4648 3348672 - 3348723 + r 80 -9.4 -3.28712 | opp_overlap 3348671 3348673 3348676, overlap 3348662 3348673 3348675 3348683 CTGCTCTCTATAAAC AGAGTTCTTGGCTTCAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAAATCG TTATCCAGGGACGCA TERM 4649 3348722 - 3348673 - R 95 -12.9 -3.51934 | opp_overlap 3348662 3348672 3348673 3348675 3348683, overlap 3348671 3348676 TGCTCTCTATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAAATC GTTATCCAGGGACGC TERM 4650 3348673 - 3348722 + r 89 -12.9 -2.57132 | opp_overlap 3348673 3348671 3348676, overlap 3348662 3348672 3348675 3348683 TGCTCTCTATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAAATC GTTATCCAGGGACGC TERM 4651 3348675 - 3348720 + r 76 -9.7 -2.82623 | opp_overlap 3348673 3348671 3348676, overlap 3348673 3348672 3348683 CTCTCTATAAACAGA GTTCTTGGCTTCAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAAA TCGTTATCCAGGGAC TERM 4652 3348719 - 3348676 - R 91 -13.2 -2.59797 | opp_overlap 3348675 3348673 3348672 3348683, overlap 3348673 3348671 TCTCTATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACCCCCACTGAAGCTTAGAA ATCGTTATCCAGGGA CLK_2487 3349505 - 3348852 - | sugar transferase family protein CLK_2488 3350950 - 3349526 - | putative polysaccharide transporter mviN 3352900 - 3351344 - | integral membrane protein MviN CLK_2490 3354022 - 3352919 - | glycosyl transferase, group 1 family protein TERM 4653 3354039 - 3354074 + r 89 -9.3 -4.30833 | opp_overlap 3354048, overlap 3354041 3354048 TCCTAATATTTCATA TTTAAAAAAGGAGTT TTAAAC AACTCCTTTTTTATA TTTATTAATAATTTA TERM 4654 3354041 - 3354072 + r 95 -11.9 -3.74047 | opp_overlap 3354048, overlap 3354039 3354048 CTAATATTTCATATT TAAAAAAGGAGTT TTAAAC AACTCCTTTTTTA TATTTATTAATAATT TERM 4655 3354048 - 3354065 + r 82 -5.6 -5.61913 | opp_overlap 3354048, overlap 3354041 3354039 TTCATATTTAAAAAA GGAGTT TTAAAC AACTCC TTTTTTATATTTATT TERM 4656 3354065 - 3354048 - R 78 -5.6 -5.1287 | opp_overlap 3354048 3354041 3354039 TTCATATTTAAAAAA GGAGTT TTAAAC AACTCC TTTTTTATATTTATT CLK_2491 3355240 - 3354113 - | glycosyl transferase, group 1 family protein TERM 4657 3355326 - 3355342 + r 77 -6.6 -4.57569 | opp_overlap 3355326 TATTACATTAAAAAA GGAGTT TTTAT AACTCC TTTTTACAAAGATCA TERM 4658 3355342 - 3355326 - R 83 -6.6 -5.23316 | opp_overlap 3355326 TATTACATTAAAAAA GGAGTT TTTAT AACTCC TTTTTACAAAGATCA CLK_2492 3356587 - 3355355 - | exopolysaccharide biosynthesis family protein CLK_2493 3357891 - 3356665 - | glycosyl transferase, group 1 family protein TERM 4659 3356985 - 3357002 + g 77 -8.5 -3.80174 | opp_overlap 3356979 TTAAAGGAACTACGG TAGCATC CATA GATGCTA TTATTCTAGGCATAT CLK_2494 3358968 - 3357910 - | UDP-N-acetylglucosamine 2-epimerase CLK_2495 3360062 - 3358968 - | glycosyl transferase, group 1 family protein TERM 4660 3359579 - 3359590 + g 70 -5.8 -4.2572 | overlap 3359576 ATGTATCTATATTTA CTCC AAAA GGAG TTATTTCTATATTTT CLK_2496 3361188 - 3360085 - | hypothetical protein CLK_2497 3362596 - 3361178 - | hypothetical protein TERM 4661 3361668 - 3361647 - G 71 -7.3 -3.71291 | overlap 3361645 AATAATTTTAAAATA GTTGGAGAA AAAC TTCTCCCAC CTAAATATGGAATAT CLK_2498 3363705 - 3362611 - | putative internalin TERM 4662 3363437 - 3363450 + g 85 -3.9 -5.71712 | TTTTGAATACCTTTG TTAGA TGCA TCTAA TTTTTTTATATCAAC TERM 4663 3363680 - 3363698 + g 74 -6.2 -4.47259 | overlap 3363668 3363678 TTCTTAAAATTGTTT TTAATTTT ATT AAAATTAA TTTTCATATTATCCT TERM 4664 3363718 - 3363740 + r 93 -8 -5.20735 | opp_overlap 3363724, overlap 3363719 CATATTATCCTCCAA TTAAAATAAA ATT TTTATTTTAA TTTATTTTTTATTCC TERM 4665 3363719 - 3363744 + r 73 -3.5 -5.54885 | opp_overlap 3363724, overlap 3363718 ATATTATCCTCCAAT TAAAATAAAAT TTTT ATTTTAATTTA TTTTTTATTCCTCTT CLK_2499 3365049 - 3363742 - | polysaccharide biosynthesis protein TERM 4666 3363930 - 3363896 - G 70 -8.6 -2.70574 | opp_overlap 3363881, overlap 3363881 3363895 3363893 3363891 3363898 3363900 3363927 CCATATAAAATATAT GATATTGTAGATGCAG CTG CTGCACCATCAATACC CCATTTAGGTATAAA TERM 4667 3363994 - 3363976 - G 71 -4.6 -4.72386 | opp_overlap 3363976 TAAATTAGCTAAAAA GGTAATTA ATG TAATAACC ATGTGTATTATTGGT TERM 4668 3364693 - 3364681 - G 76 -6.3 -4.67011 | AATTGTATTCAAAAA TGTAC AAA GTACA ATACTAAATCCAGCT CLK_2500 3365826 - 3365080 - | putative acetyltransferase TERM 4669 3365852 - 3365905 + r 82 -8.6 -4.46652 | opp_overlap 3365853, overlap 3365853 3365900 CTATATTAAAATAAA ATTTTAAAATTACCACCATAATAT AATATC ATATTTTGATGGTAATTTTAAAAA TTTAATTTTTATTTA TERM 4670 3365853 - 3365904 + r 93 -12.1 -3.25551 | opp_overlap 3365853, overlap 3365852 3365900 TATATTAAAATAAAA TTTTAAAATTACCACCATAATAT AATATC ATATTTTGATGGTAATTTTAAAA ATTTAATTTTTATTT TERM 4671 3365904 - 3365853 - R 100 -15 -5.16132 | opp_overlap 3365853 3365852 3365900 TATATTAAAATAAAA TTTTAAAATTACCACCATAATATA ATAT CATATTTTGATGGTAATTTTAAAA ATTTAATTTTTATTT CLK_2501 3367035 - 3365926 - | NAD-binding Rossmann fold family oxidoreductase TERM 4672 3367097 - 3367051 - R 72 -7.7 -3.59738 | gap 1, opp_overlap 3367045 3367046 3367054 3367058 3367060, overlap 3367060 CACTATACCTCCAAA TTTTATTAATTAGGATAAGTTC AAAA GAACTTATCCTAAT-ATTAATA TTATAGTTTGTGTAT TERM 4673 3367054 - 3367097 + r 79 -8.7 -3.67705 | gap 2, opp_overlap 3367051 3367060, overlap 3367045 3367046 3367058 3367060 TATACCTCCAAATTT TATTAAT--TAGGATAAGTTC AAAA GAACTTATCCTAATATTAATA TTATAGTTTGTGTAT TERM 4674 3367058 - 3367091 + r 95 -12.7 -3.44876 | opp_overlap 3367051 3367060, overlap 3367045 3367054 3367046 3367060 CCTCCAAATTTTATT AATTAGGATAAGTTC AAAA GAACTTATCCTAATA TTAATATTATAGTTT TERM 4675 3367089 - 3367060 - R 100 -15.3 -3.2048 | opp_overlap 3367045 3367058 3367054 3367046 3367060, overlap 3367051 TCCAAATTTTATTAA TTAGGATAAGTTC AAAA GAACTTATCCTAA TATTAATATTATAGT TERM 4676 3367060 - 3367089 + r 100 -15.3 -3.28173 | opp_overlap 3367060 3367051, overlap 3367045 3367058 3367054 3367046 TCCAAATTTTATTAA TTAGGATAAGTTC AAAA GAACTTATCCTAA TATTAATATTATAGT CLK_2502 3368414 - 3367098 - | UDP-glucose/GDP-mannose dehydrogenase family protein CLK_2503 3370409 - 3368544 - | exopolysaccharide biosynthesis protein TERM 4677 3370298 - 3370272 - G 71 -7.6 -3.39595 | overlap 3370273 TGGAATTACTGATAA CTTAAAAAATAT CAT ATATTTTTTAAA TTCCGAAGCCATAGA TERM 4678 3370297 - 3370273 - G 70 -8.9 -2.63435 | overlap 3370272 GGAATTACTGATAAC TTAAAAAATAT CAT ATATTTTTTAA ATTCCGAAGCCATAG TERM 4679 3370585 - 3370551 - R 90 -10.2 -3.79164 | opp_overlap 3370556, overlap 3370556 TTATAAATAAATTAA TAAAACCGTTGATAAA AAA TATATCAACGGTTTTC TAAACTACATACTAA TERM 4680 3370580 - 3370556 - R 100 -10.1 -4.88407 | opp_overlap 3370556, overlap 3370551 AATAAATTAATAAAA CCGTTGATAAA AAA TATATCAACGG TTTTCTAAACTACAT TERM 4681 3370556 - 3370580 + r 100 -10.1 -4.40358 | opp_overlap 3370556 3370551 AATAAATTAATAAAA CCGTTGATAAA AAA TATATCAACGG TTTTCTAAACTACAT CLK_2504 3373484 - 3370590 - | putative N-acetylmuramoyl-L-alanine amidase TERM 4682 3373381 - 3373363 - G 75 -9.6 -2.51725 | overlap 3373362 3373360 ACTTTAGATGAATAT GCACCGTT TAT AACGGTAC TAATAAAAATTATTA TERM 4683 3373587 - 3373562 - R 83 -3.4 -5.99154 | CATCAAATAAAAAAA TCACCAATCA TGGAAT TAATTGATGA TTTTTTATACTTTAA CLK_2505 3376876 - 3373664 - | putative N-acetylmuramoyl-L-alanine amidase TERM 4684 3376959 - 3376973 + r 73 -4.4 -5.11112 | opp_overlap 3376959 CTTAAAATAAAATTA TAATAA TGT TTATTA TTTTTATTGAACTTT CLK_2506 3380530 - 3377066 - | beta-N-acetylglucosaminidase TERM 4685 3380623 - 3380607 - R 79 -2.2 -6.09196 | opp_overlap 3380599 TTTAAAATAAAAAAA GATGGC TTTTC ACCACC TTTTTTTATTCAGTT galU 3381525 - 3380629 - | UTP-glucose-1-phosphate uridylyltransferase TERM 4686 3381197 - 3381210 + g 70 -5.3 -4.65219 | CAACTTATAGCATGC CCTAA TCCT TTAGG TTCTTTTTGTCTTAT CLK_2508 3382651 - 3381575 - | TPR domain-containing protein TERM 4687 3382484 - 3382471 - G 85 -2.5 -5.93809 | CTTCTACAAAAAAAA TAATA GGTA TATTA TCTAAATCTTCACTT TERM 4688 3382786 - 3382732 - R 100 -25.1 -5.30339 | opp_overlap 3382732 ATGAAAATACAAAAA TATTTAAATTATGCATAGGATAATT AAAAA AATTATCCTATGCATAATTTAAATA TTTGTAGTTTTAAAA TERM 4689 3382732 - 3382786 + r 100 -25.1 -4.208 | opp_overlap 3382732 ATGAAAATACAAAAA TATTTAAATTATGCATAGGATAATT AAAAA AATTATCCTATGCATAATTTAAATA TTTGTAGTTTTAAAA CLK_2509 3384523 - 3382796 - | phosphoglucomutase/phosphomannomutase family protein TERM 4690 3384588 - 3384614 + r 79 -8.8 -3.63627 | opp_overlap 3384591, overlap 3384591 TAATTGTACTAAATT TAAGGAAAGTTC CAC GCACTTTCCTTG TTTAGAGTATAGAGA TERM 4691 3384611 - 3384591 - R 74 -8.3 -3.30701 | opp_overlap 3384588 3384591 TTGTACTAAATTTAA GGAAAGTTC CAC GCACTTTCC TTGTTTAGAGTATAG TERM 4692 3384591 - 3384611 + r 78 -8.3 -3.95378 | opp_overlap 3384591, overlap 3384588 TTGTACTAAATTTAA GGAAAGTTC CAC GCACTTTCC TTGTTTAGAGTATAG CLK_2510 3385690 - 3385154 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 CLK_2511 3385897 - 3387357 + | Orn/Lys/Arg decarboxylase CLK_2512 3388376 - 3387543 - | hypothetical protein TERM 4693 3387733 - 3387745 + g 91 -4.9 -5.95539 | opp_overlap 3387715, overlap 3387731 CTATTAAACCTTATA GAAAA AGA TTTTC TTTTTTTATTTACAC TERM 4694 3388481 - 3388519 + r 75 -8.4 -3.54177 | opp_overlap 3388481, overlap 3388485 ATGCTTTATAAAAAA TAAATAAGCTCTTGTATA TAT TAATTAAGAGCTTATTTA TTAATTAATTTTAAA TERM 4695 3388519 - 3388481 - R 80 -6.2 -5.24531 | opp_overlap 3388481 3388485 ATGCTTTATAAAAAA TAAATAAGCTCTTGTATA TAT TAATTAAGAGCTTATTTA TTAATTAATTTTAAA CLK_2513 3389664 - 3388762 - | phosphate acetyl/butyryl transferase CLK_2514 3391284 - 3390271 - | dehydrogenase, FMN-dependent CLK_2515 3391990 - 3391520 - | hypothetical protein CLK_2516 3394544 - 3392178 - | MutS2 family protein TERM 4696 3394717 - 3394665 - R 95 -10.8 -3.89822 | gap 1, opp_overlap 3394647 3394666 3394667 3394669, overlap 3394667 3394670 GATTTATTGTATAAA CAGAGTTCTTGGCTTTAAAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC-G TTATCCAGAGACTTA TERM 4697 3394666 - 3394717 + r 90 -11 -3.29461 | opp_overlap 3394665 3394667 3394670, overlap 3394647 3394667 3394669 ATTTATTGTATAAAC AGAGTTCTTGGCTTTAAAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATCG TTATCCAGAGACTTA TERM 4698 3394716 - 3394667 - R 100 -14.5 -3.53733 | opp_overlap 3394647 3394666 3394667 3394669, overlap 3394665 3394670 TTTATTGTATAAACA GAGTTCTTGGCTTTAAAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGAGACTT TERM 4699 3394667 - 3394716 + r 100 -14.5 -2.57463 | opp_overlap 3394667 3394665 3394670, overlap 3394647 3394666 3394669 TTTATTGTATAAACA GAGTTCTTGGCTTTAAAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGAGACTT TERM 4700 3394669 - 3394714 + r 85 -11.3 -2.82623 | opp_overlap 3394667 3394665 3394670, overlap 3394667 3394666 TATTGTATAAACAGA GTTCTTGGCTTTAAAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAA TCGTTATCCAGAGAC TERM 4701 3394713 - 3394670 - R 100 -14.8 -2.60065 | opp_overlap 3394669 3394667 3394666, overlap 3394667 3394665 ATTGTATAAACAGAG TTCTTGGCTTTAAAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAA ATCGTTATCCAGAGA CLK_2517 3397174 - 3394808 - | U32 family peptidase TERM 4702 3395583 - 3395603 + g 77 -8.5 -3.78312 | TTTAACTGTTCATAG GTATATATT GAA AATATATAC TTTGGTAAATCATTT TERM 4703 3395675 - 3395687 + g 82 -7.7 -4.47977 | overlap 3395679 AAACTCTTTTGCTTT TCCAC AAT GTGGA TTGTTTTGTATTATT TERM 4704 3396055 - 3396076 + g 73 -3.9 -5.3104 | gap 1 TTTTATATAATTTAT CCTT-AAATT TAT AATTTGAAGG TTTTATTTTTACTAA TERM 4705 3397567 - 3397537 - R 84 -9.1 -4.23853 | gap 1, opp_overlap 3397536 AATAATATATAGAAA GACTTCGCATCCCC ATGC AGGGAC-CGAAGTC ATAATATCCAAAGTA CLK_2518 3398776 - 3397898 - | hypothetical protein TERM 4706 3400527 - 3400514 - g 81 -3.9 -5.60556 | AATACAAAAGAAAAA TTAGA AAAA TCTAA AAGCCATACTCTTTC CLK_2519 3398981 - 3400756 + | hypothetical protein TERM 4707 3400858 - 3400831 - T 100 -12.2 -4.62471 | opp_overlap 3400830 3400831 TTTAATTTCTAAAAA CTCCTTGCATTT TATT AAATACAAGGAG CTTAATTATTAGCTG TERM 4708 3400831 - 3400858 + T 79 -10 -2.72459 | opp_overlap 3400831, overlap 3400830 TTTAATTTCTAAAAA CTCCTTGCATTT TATT AAATACAAGGAG CTTAATTATTAGCTG CLK_2520 3401523 - 3400927 - | hypothetical protein TERM 4709 3402278 - 3402313 + r 100 -17.2 -5.74086 | gap 1, opp_overlap 3402278 CTTATTATAAAAAAA TAGCCGTACACACATTA GCA TAA-GTGTGTACGGCTA TTTTTTATTTACTTT TERM 4710 3402313 - 3402278 - R 100 -17.2 -5.67063 | gap 1, opp_overlap 3402278 CTTATTATAAAAAAA TAGCCGTACACACATTA GCA TAA-GTGTGTACGGCTA TTTTTTATTTACTTT CLK_2521 3402912 - 3402322 - | hypothetical protein TERM 4711 3402381 - 3402399 + g 86 -3.2 -5.96219 | opp_overlap 3402381 TTTCTTTAGCCAAAG TTAATTGA CTG TCCATTAA TTTTTTTTCTAGATC pheT 3405501 - 3403117 - | phenylalanyl-tRNA synthetase, beta subunit TERM 4712 3404658 - 3404672 + g 76 -2.8 -5.5454 | CTTTTGCTCTTTCCA CCACTA TAG TATTGG TTTTTATTTCTTTCC TERM 4713 3405560 - 3405595 + r 78 -9.3 -3.03214 | overlap 3405562 3405564 TTCAAAATATTTATT TACACTTCTATTTTA TACAAC TAAACTAGAAGTGTA TGTCTATAATGCCTT pheS 3406681 - 3405662 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 4714 3406760 - 3406738 - R 100 -8.4 -5.55769 | TTTTATAATAAAAAA GTCCATCCCC TAA AGGGACGAAC TAAATCCGCGGTACC CLK_2524 3407807 - 3407028 - | RNA methyltransferase CLK_2525 3408578 - 3407916 - | TrkA family potassium uptake protein CLK_2526 3409932 - 3408589 - | TrkH family potassium uptake protein TERM 4715 3410034 - 3410016 - R 100 -8.9 -5.36314 | opp_overlap 3410012 3410016 TAAAATATTAAAAAA TACGGCT ATTTA AGCCGTA TTAATTCTTATAATT TERM 4716 3410016 - 3410034 + r 79 -8.9 -3.59882 | opp_overlap 3410016, overlap 3410012 TAAAATATTAAAAAA TACGGCT ATTTA AGCCGTA TTAATTCTTATAATT rplT 3410415 - 3410056 - | ribosomal protein L20 TERM 4717 3410385 - 3410399 + g 77 -5.7 -4.87626 | TTTTATGACGTTTAC GAGCA TTCAT TGCTC TTTTTACTCTTGCCA rpmI 3410642 - 3410445 - | ribosomal protein L35 infC 3411218 - 3410664 - | translation initiation factor IF-3 TERM 4718 3410899 - 3410915 + g 79 -7.3 -4.50487 | TCATGCGCTTCTATA GTTGGAC TTA GTCTAAC TTCTTTTATGTTTAT TERM 4719 3411256 - 3411241 - R 100 -10.4 -5.14682 | opp_overlap 3411241 GTATAATAAATAAAA GACGGC ATAA GCCGTC TTCATAAACAATAAT TERM 4720 3411241 - 3411256 + r 87 -10.4 -3.1505 | opp_overlap 3411241 GTATAATAAATAAAA GACGGC ATAA GCCGTC TTCATAAACAATAAT TERM 4721 3411323 - 3411290 - R 71 -8.3 -2.99204 | gap 1, opp_overlap 3411317 3411321 AATTAAATTCATATA CTCTAACCTTACTAGC CAT GCT-GTAAGGTGAGAA ACGGCCTGTTTCTAC thrS 3413380 - 3411473 - | threonyl-tRNA synthetase TERM 4722 3413444 - 3413422 - R 100 -7.7 -6.02919 | opp_overlap 3413422 TTACAAATAAAAAAA CCCATCCCA ACACA TGGGACGAG TGTATTTTCGTGGTT CLK_2531 3414627 - 3413728 - | hypothetical protein TERM 4723 3414725 - 3414698 - H 73 -2.8 -5.73339 | opp_overlap 3414698, overlap 3414700 ACAATTATAAAAAAA TATCGACATATT ACTT AATATGTTGAAA ATTTTTTCAAATAAA TERM 4724 3415049 - 3415037 - g 70 -6.3 -4.05446 | opp_overlap 3415048, overlap 3415048 TCTTTGAAGGATAAA TATCC AAT GGATA TAATGCTAAATGCAT CLK_2532 3414782 - 3415489 + | hypothetical protein TERM 4725 3415596 - 3415621 + T 100 -7.7 -5.95946 | opp_overlap 3415596 AGTAAATATAAAAAA TACACGTCATA AACA TATAACGTGTA TTTTTTTGTTATTCC TERM 4726 3415621 - 3415596 - T 100 -9.9 -5.5762 | opp_overlap 3415596 AGTAAATATAAAAAA TACACGTCATA AACA TATAACGTGTA TTTTTTTGTTATTCC CLK_2533 3417251 - 3415680 - | ABC transporter, permease protein CLK_2534 3417948 - 3417253 - | ABC transporter, ATP-binding protein TERM 4727 3418260 - 3418233 - R 100 -13 -5.39755 | opp_overlap 3418233, overlap 3418196 TATAAGCATAAAAAA GAGAGATAATAT TTAA ATATTATCTCTC TTTGGAGGCGCCACC TERM 4728 3418233 - 3418260 + r 95 -13 -3.53012 | opp_overlap 3418196 3418233 TATAAGCATAAAAAA GAGAGATAATAT TTAA ATATTATCTCTC TTTGGAGGCGCCACC hsp33 3419616 - 3418726 - | 33 kDa chaperonin CLK_2541 3420394 - 3419654 - | hypothetical protein TERM 4729 3420464 - 3420424 - R 71 -6.4 -4.07789 | overlap 3420422 3420426 TAATTTATAAAAATA TACTTACCTAATAAATAT TATAT ACTTTTATTAGGTAAGTC AATAGATTAGTGCTT TERM 4730 3420462 - 3420426 - R 79 -9 -3.61603 | overlap 3420424 3420422 ATTTATAAAAATATA CTTACCTAATAAATAT TATAT ACTTTTATTAGGTAAG TCAATAGATTAGTGC CLK_2542 3420752 - 3420480 - | small acid-soluble spore protein TERM 4731 3420846 - 3420827 - R 80 -6.4 -4.93898 | opp_overlap 3420827 ATACTATTATAAAAA GAGACTGA AATA CCAGCCTC TTCTTTATTACATAT CLK_2543 3422022 - 3421063 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein CLK_2544 3423041 - 3422022 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein CLK_2545 3423973 - 3423056 - | oligopeptide/dipeptide ABC transporter, permease protein CLK_2546 3424918 - 3423989 - | oligopeptide/dipeptide ABC transporter, permease protein TERM 4732 3424983 - 3424957 - R 100 -15.2 -3.4285 | opp_overlap 3424964 TTATGTAACTTATAA CAGCAGAGCCAT TAA AAGGCTCTGCTG CATAAAATAATACTA CLK_2547 3426681 - 3424999 - | oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein TERM 4733 3426732 - 3426715 - H 70 -4.1 -5.26316 | overlap 3426703 3426719 3426720 3426729 TTATTTTATAAAAAA CAAGCGG AAAT CCACTTA TTTCCAATAAAAATT asd 3427165 - 3428157 + | aspartate-semialdehyde dehydrogenase dapA 3428180 - 3429058 + | dihydrodipicolinate synthase TERM 4734 3429065 - 3429095 + F 93 -12.8 -3.11218 | opp_overlap 3429066 3429070, overlap 3429070 TTAATGTAATATAAT ATAAAGTGTAGAGA TTA TCTCTACACTTTAC TATTAAACTATTTAA TERM 4735 3429094 - 3429066 - f 100 -16.3 -3.43553 | opp_overlap 3429065 3429070, overlap 3429070 TAATGTAATATAATA TAAAGTGTAGAGA TTA TCTCTACACTTTA CTATTAAACTATTTA TERM 4736 3429090 - 3429070 - f 100 -12.7 -4.34444 | opp_overlap 3429065 3429070, overlap 3429066 GTAATATAATATAAA GTGTAGAGA TTA TCTCTACAC TTTACTATTAAACTA TERM 4737 3429070 - 3429090 + F 100 -12.7 -3.93038 | opp_overlap 3429070 3429066, overlap 3429065 GTAATATAATATAAA GTGTAGAGA TTA TCTCTACAC TTTACTATTAAACTA dapB 3429288 - 3430043 + | dihydrodipicolinate reductase CLK_2551 3431526 - 3430357 - | aminotransferase, classes I and II CLK_2552 3431784 - 3432494 + | putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TERM 4738 3432618 - 3432561 - T 91 -10.3 -3.68886 | gap 1, opp_overlap 3432561 3432563 3432570 3432573, overlap 3432563 3432573 ATTAATTCATTTAAA TATAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCATG TTTTTCTTTTATATT TERM 4739 3432561 - 3432618 + T 100 -12.5 -5.60556 | gap 1, opp_overlap 3432561 3432563 3432573, overlap 3432563 3432570 3432573 ATTAATTCATTTAAA TATAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCATG TTTTTCTTTTATATT TERM 4740 3432563 - 3432616 + T 100 -12.9 -4.39746 | gap 1, opp_overlap 3432563 3432561 3432573, overlap 3432561 3432570 3432573 TAATTCATTTAAATA TAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCA TGTTTTTCTTTTATA TERM 4741 3432616 - 3432563 - T 95 -12.9 -3.42283 | gap 1, opp_overlap 3432561 3432563 3432570 3432573, overlap 3432561 3432573 TAATTCATTTAAATA TAC-TTGAGAATAGTATGTACAACTT AAA AAGTTGTACATACTATTCTTTATGCA TGTTTTTCTTTTATA TERM 4742 3432570 - 3432608 + T 100 -22.2 -4.02468 | opp_overlap 3432563 3432561 3432573, overlap 3432563 3432561 3432573 TTTAAATATACTTGA GAATAGTATGTACAACTT AAA AAGTTGTACATACTATTC TTTATGCATGTTTTT TERM 4743 3432605 - 3432573 - T 100 -18.1 -3.3705 | opp_overlap 3432570 3432563 3432561 3432573, overlap 3432563 3432561 AAATATACTTGAGAA TAGTATGTACAACTT AAA AAGTTGTACATACTA TTCTTTATGCATGTT TERM 4744 3432573 - 3432605 + T 100 -18.1 -4.10791 | opp_overlap 3432573 3432563 3432561, overlap 3432570 3432563 3432561 AAATATACTTGAGAA TAGTATGTACAACTT AAA AAGTTGTACATACTA TTCTTTATGCATGTT CLK_2553 3433311 - 3432610 - | single-strand nucleic acid-binding domain-containing protein CLK_2554 3433886 - 3433389 - | hypothetical protein TERM 4745 3433898 - 3433933 + r 95 -12.2 -3.7229 | opp_overlap 3433903 3433908, overlap 3433908 TCATTTTACACGCTC CTAAAGAAAATAACTA TTTT TAGTTATTTTCTTCAG TTTACAATATTTTAT TERM 4746 3433928 - 3433903 - R 91 -10.7 -3.55071 | opp_overlap 3433898 3433908, overlap 3433908 TTACACGCTCCTAAA GAAAATAACTA TTTT TAGTTATTTTC TTCAGTTTACAATAT TERM 4747 3433908 - 3433923 + r 70 -4.8 -4.75309 | opp_overlap 3433908 3433903, overlap 3433898 CGCTCCTAAAGAAAA TAACTA TTTT TAGTTA TTTTCTTCAGTTTAC TERM 4748 3433923 - 3433908 - R 70 -4.8 -4.86731 | opp_overlap 3433898 3433908, overlap 3433903 CGCTCCTAAAGAAAA TAACTA TTTT TAGTTA TTTTCTTCAGTTTAC CLK_2555 3434837 - 3434085 - | polysaccharide deacetylase family protein TERM 4749 3434875 - 3434887 + H 77 -3.5 -5.72616 | overlap 3434868 3434877 TTCTTCATTTTTATT TATAT AAA ATATA TTTTTTTATATGCAT CLK_2556 3435001 - 3435528 + | hypothetical protein TERM 4750 3435571 - 3435545 - T 82 -8.1 -4.47259 | opp_overlap 3435542 3435545 ATTATAATACTAAAA TACCTGTAGGT TCTCC ACCTATAGGTA TGGATTTTTTATTGT TERM 4751 3435545 - 3435571 + T 85 -10.3 -3.00342 | opp_overlap 3435545, overlap 3435542 ATTATAATACTAAAA TACCTGTAGGT TCTCC ACCTATAGGTA TGGATTTTTTATTGT CLK_2557 3436415 - 3435531 - | hypothetical protein TERM 4752 3435928 - 3435944 + g 81 -9.5 -3.67368 | overlap 3435926 GTGAAAACAGCTTTT GTTGGAT AAG ATCCAAC TCTTATATTTTTTAC CLK_2558 3436555 - 3436815 + | hypothetical protein TERM 4753 3436831 - 3436795 - T 100 -7.5 -5.71638 | opp_overlap 3436803, overlap 3436800 CAAGAAGCAAAAAAA CAAAATAAGGAAAGCAT CTA ACACTTTCCTTACCTTA TTAATTTTCTCATAT TERM 4754 3436826 - 3436800 - T 100 -9.6 -5.57888 | opp_overlap 3436803, overlap 3436795 AGCAAAAAAACAAAA TAAGGAAAGCAT CTA ACACTTTCCTTA CCTTATTAATTTTCT folC 3438113 - 3436824 - | FolC bifunctional protein TERM 4755 3437312 - 3437322 + g 91 -5.4 -5.69793 | opp_overlap 3437312 CTAAGGCTAATATAA CTGT AAT ACAG TTTTTTATTTGATGT TERM 4756 3438375 - 3438349 - R 73 -9 -2.84327 | overlap 3438348 CAATAAAATTATAAT TTATTCTATTAA ATA TTAACAGAATAA TCGTGAAAAATTTAC TERM 4757 3438420 - 3438468 + r 95 -9.2 -4.80729 | opp_overlap 3438425 3438429, overlap 3438425 TACTTTATATTTTTA TATAATAAATACAGGAAAGTTA CAAAA TGTCTTTCCTGTATTTATGGTA TTTTATATTATATTT TERM 4758 3438463 - 3438425 - R 89 -9.8 -3.49951 | opp_overlap 3438420 3438425, overlap 3438429 TATATTTTTATATAA TAAATACAGGAAAGTTAC AAA ATGTCTTTCCTGTATTTA TGGTATTTTATATTA TERM 4759 3438425 - 3438463 + r 87 -11.3 -3.02181 | opp_overlap 3438425 3438429, overlap 3438420 TATATTTTTATATAA TAAATACAGGAAAGTTA CAAAA TGTCTTTCCTGTATTTA TGGTATTTTATATTA TERM 4760 3438459 - 3438429 - R 72 -6.2 -4.38927 | opp_overlap 3438425 3438420, overlap 3438425 TTTTTATATAATAAA TACAGGAAAGTTAC AAA ATGTCTTTCCTGTA TTTATGGTATTTTAT valS 3441185 - 3438540 - | valyl-tRNA synthetase TERM 4761 3439361 - 3439371 + g 75 -4 -5.33331 | ATATCCATTTATCAG CTAT AGT ATAG TTTTTATTATCTTTA CLK_2561 3441712 - 3441206 - | acetyltransferase TERM 4762 3441794 - 3441761 - R 100 -10.4 -5.77734 | AAATAAAAATAAAAA GAGGCCTTTCATCC ATAAAA GGACGAAAAACCTC GCGTTACCACCTTTT CLK_2562 3442182 - 3442057 - | hypothetical protein CLK_2563 3443092 - 3442337 - | ABC transporter, ATP-binding protein CLK_2564 3445590 - 3443095 - | putative ABC transporter, permease protein TERM 4763 3443500 - 3443511 + g 78 -3 -5.50499 | AGCTAACAAGGTGTC GTTT TGTA AAAC TTTTTTTCCATATAC TERM 4764 3445573 - 3445559 - G 71 -7.2 -3.74089 | opp_overlap 3445559 3445558, overlap 3445557 AGTATAATAGAAATA GCAAAT AAT ATTTGC ATCTTTGGTTTTTTC TERM 4765 3446109 - 3446083 - R 70 -6 -4.28069 | opp_overlap 3446084 3446086, overlap 3446079 3446086 AGATAATGTAAGAAA CTACTTTCATAA GTA TTATAAAAGTGG TTAAACATTAAAACA TERM 4766 3446162 - 3446176 + r 73 -4.4 -5.14477 | opp_overlap 3446162 AATAGACAAAATTAT TATATT TCC AATATA TTTTTTAACTCTCTC CLK_2565 3447080 - 3446424 - | ABC transporter, ATP-binding protein TERM 4767 3446721 - 3446737 + g 84 -6.7 -5.20216 | ATCTAATAACTCATT TAGATAA TCT TTATCTA TTTTTTCATGATCTA CLK_2566 3449693 - 3447096 - | ABC transporter, permease protein TERM 4768 3448518 - 3448542 + g 78 -3 -5.5762 | opp_overlap 3448506 AACTTCTTCAATGCT GAAAAACTTA TTACT TAATTTTTTC TTTTTTGTATTTACT TERM 4769 3448993 - 3448972 - G 90 -4.5 -5.67063 | opp_overlap 3448972 GCTACCATAAAAAAA GTGATATAA TCTA TAATATCAC TTTTAGTCCTACCTT TERM 4770 3450206 - 3450182 - g 71 -4.5 -4.79223 | opp_overlap 3450193, overlap 3450191 3450193 GGATATTATGAAAAA CAAAAAAATTA CTG TAATTTCTTTA ATCACAGTCTTAATT CLK_2567 3450174 - 3451202 + | putative ABC transporter, substrate-binding protein CLK_2568 3455866 - 3451574 - | putative CoA-substrate-specific enzyme activase TERM 4771 3453502 - 3453512 + g 81 -2.6 -5.75478 | ATAGGAATGGGTTCA TATA TTT TATA TTTTTTTCTCTAATT TERM 4772 3454437 - 3454411 - G 85 -7.4 -4.91712 | TGGAATTCATAAAAA CAGTACATCTAG ATC CTAAATCTACTG GATTCTTAGAGGTTA TERM 4773 3455580 - 3455590 + g 75 -4 -5.2112 | ATAGCTACATCAGTA TTTG TAG CAAA TTTTTTAATAGTATT CLK_2569 3456188 - 3456949 + | ABC transporter, ATP-binding protein CLK_2570 3456946 - 3457749 + | ABC transporter, permease protein TERM 4774 3457769 - 3457804 + F 100 -8.6 -6.11644 | overlap 3457773 AATTTTTTATTTTAA TAGGTCTATTTAGAAA TCTT TTTCTGAATAGATTTA TTTTTTTTTGCATAA TERM 4775 3457773 - 3457800 + F 100 -9.4 -5.45056 | overlap 3457769 TTTTATTTTAATAGG TCTATTTAGAAA TCTT TTTCTGAATAGA TTTATTTTTTTTTGC CLK_2571 3457894 - 3458241 + | TPR domain-containing protein TERM 4776 3458329 - 3458360 + T 100 -11.8 -4.6902 | opp_overlap 3458329 TTAATCTATATAAAA TGCTAGTAACTTTT ATAT AAAAGCTACTAGCA TTTTTACCATTCTCC TERM 4777 3458360 - 3458329 - T 100 -14 -4.57474 | opp_overlap 3458329 TTAATCTATATAAAA TGCTAGTAACTTTT ATAT AAAAGCTACTAGCA TTTTTACCATTCTCC CLK_2572 3459539 - 3458364 - | transglutaminase domain-containing protein TERM 4778 3458827 - 3458845 + g 91 -4.6 -5.88197 | TCTTCTAATGTTACC CCATTATA ATA TACAATGG TTTTTTTATCTTTAA TERM 4779 3459355 - 3459367 + g 76 -2.7 -5.59357 | TATATGCCTACATTA TGTTC TAT GAATA TTTTTTTACTATAAT recX 3460499 - 3459564 - | regulatory protein RecX TERM 4780 3459934 - 3459916 - G 74 -9 -3.37464 | opp_overlap 3459916 3459926 TCAGCAATGTTAGAA TTATATCC TCT GGATATAA TGTATGGCCATATTT TERM 4781 3459916 - 3459934 + g 72 -9 -2.89935 | opp_overlap 3459916, overlap 3459926 TCAGCAATGTTAGAA TTATATCC TCT GGATATAA TGTATGGCCATATTT CLK_2574 3461750 - 3460521 - | M16 family peptidase TERM 4782 3461246 - 3461263 + g 73 -5.7 -4.63172 | TTATAAATTTGTCTC TAGTAAA AGAT TTTACTA TTTTCTCATTTCCTA TERM 4783 3462122 - 3462142 + G 82 -4 -5.53288 | TACTACCTTTTCTCT CTTCCTAT TCCAT ATGGGGAG TTTTTTTGGGTTGCA CLK_2575 3461971 - 3462474 + | hypothetical protein CLK_2576 3462512 - 3463099 + | putative flavin reductase TERM 4784 3463436 - 3463411 - g 73 -5.5 -4.67697 | TTGGAAAATAATAAA CAAAGGCACTT GGGG AAGTAGCTTTG GTGGTAGATGGATGG CLK_2577 3463157 - 3463852 + | ErfK/YbiS/YcfS/YnhG family protein TERM 4785 3463861 - 3463832 - T 75 -8.7 -3.28472 | gap 1, opp_overlap 3463833, overlap 3463830 3463829 3463833 TTTTATGAAAAACTA GGGGTAGAACTTAT AGA ATAAGCTCC-CCCC TTTATATAAATTTAT TERM 4786 3463861 - 3463833 - T 72 -8.9 -2.56601 | opp_overlap 3463833, overlap 3463832 3463830 3463829 TTTATGAAAAACTAG GGGTAGAACTTAT AGA ATAAGCTCCCCCC TTTATATAAATTTAT CLK_2578 3464762 - 3463887 - | hypothetical protein CLK_2579 3465082 - 3464804 - | hypothetical protein TERM 4787 3465101 - 3465121 + r 80 -9.9 -2.92135 | opp_overlap 3465106, overlap 3465100 3465103 TGTCGTTCTCCTTTC CAGAATATT AGA AATATTCTG ATTATTACTTCTATA TERM 4788 3465150 - 3465206 + r 100 -20.7 -3.34652 | opp_overlap 3465196, overlap 3465150 3465155 3465157 3465196 TAACTTGGTAATTTG TTTTATATTTCTTCGTTATCCTATCTT TAA AAGATAGGATAACGAAGAAATGTTAAC TATATTATTTAGACA TERM 4789 3465150 - 3465208 + r 100 -13.1 -3.55603 | gap 2, opp_overlap 3465196, overlap 3465150 3465155 3465157 3465196 TAACTTGGTAATTTG T--TTTATATTTCTTCGTTATCCTATCTT TAA AAGATAGGATAACGAAGAAATGTTAACTA TATTATTTAGACATT TERM 4790 3465155 - 3465201 + r 100 -25 -3.22306 | opp_overlap 3465196, overlap 3465150 3465150 3465157 3465196 TGGTAATTTGTTTTA TATTTCTTCGTTATCCTATCTT TAA AAGATAGGATAACGAAGAAATG TTAACTATATTATTT TERM 4791 3465157 - 3465199 + r 100 -25.4 -3.15985 | opp_overlap 3465196, overlap 3465155 3465150 3465150 3465196 GTAATTTGTTTTATA TTTCTTCGTTATCCTATCTT TAA AAGATAGGATAACGAAGAAA TGTTAACTATATTAT proC 3466017 - 3465211 - | pyrroline-5-carboxylate reductase TERM 4792 3466045 - 3466090 + r 73 -3.5 -5.48028 | gap 1, overlap 3466046 TAATAAAAATTTGTT ACTAGGAGAAAGACTTAA-ATT ATA AATCTTAGTTCCTTCTCCTAGC TTTTATTTTTCTTTA TERM 4793 3466046 - 3466089 + r 71 -7 -3.85156 | gap 1, overlap 3466045 AATAAAAATTTGTTA CTAGGAGAAAGACTTAA-ATT ATA AATCTTAGTTCCTTCTCCTAG CTTTTATTTTTCTTT CLK_2581 3468491 - 3466128 - | formate acetyltransferase TERM 4794 3466789 - 3466807 + g 74 -9 -3.21925 | GTTATATTCTTTTCA TCAAATAC TTG GTATTTGA TTGCTGATAAACTGT CLK_2582 3469400 - 3468498 - | glycyl-radical enzyme activating family protein TERM 4795 3469442 - 3469456 + r 73 -4.4 -5.1963 | TTATAAAATCTACTT TATTAA ATT TTAATA TTTTTCTTCCTTAAA CLK_2583 3470020 - 3469451 - | DNA-binding protein TERM 4796 3470488 - 3470504 + r 78 -5.3 -5.16969 | opp_overlap 3470493 ACATGTGTTGTTTCA TTATATA TAA TATATAA TTTATTTTTTATATA TERM 4797 3470635 - 3470610 - R 91 -4.9 -6.09888 | opp_overlap 3470610 TTGGAACAAAAAAAA CTATTGATA ACTTGATA TATCAATAG TTTTTGCTATTTATT TERM 4798 3470610 - 3470635 + r 72 -4.9 -4.97461 | opp_overlap 3470610 TTGGAACAAAAAAAA CTATTGATA ACTTGATA TATCAATAG TTTTTGCTATTTATT CLK_2584 3471392 - 3470664 - | BRCT domain-containing protein CLK_2585 3471770 - 3471429 - | hypothetical protein CLK_2586 3473518 - 3471782 - | von Willebrand factor type A domain-containing protein CLK_2587 3474869 - 3473541 - | AAA family ATPase CLK_2588 3475509 - 3476585 + | hypothetical protein CLK_2589 3476653 - 3477738 + | hypothetical protein TERM 4799 3477748 - 3477772 + T 100 -11.6 -5.52347 | opp_overlap 3477752 AAATAATTTTTTGGA TGAACACCTA ATTAA TAGGTGTTCA TTTTTTAATTTTATT CLK_2590 3478117 - 3477917 - | iron-sulfur cluster-binding protein TERM 4800 3478140 - 3478117 - G 76 -9.7 -2.83119 | opp_overlap 3478117, overlap 3478114 AAGCTTTCATAACCA TCGTAGCTT AAATAA AAGCTACGA TTTTTCACCTACCTT TERM 4801 3478117 - 3478140 + g 100 -9.7 -4.63184 | opp_overlap 3478117 3478114 AAGCTTTCATAACCA TCGTAGCTT AAATAA AAGCTACGA TTTTTCACCTACCTT CLK_2591 3478352 - 3479245 + | hypothetical protein CLK_2592 3479248 - 3480345 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit CLK_2593 3480326 - 3481300 + | putative CoA-substrate-specific enzyme activase TERM 4802 3481359 - 3481305 - T 100 -10.4 -5.0133 | opp_overlap 3481318 CATCTTCTTAAAAAA TAAAATATAAAAACGACAGAGTACTT AAT AATGGCTCTGTTGTTTTTATATTTTA TCAAGTTAAATTATA TERM 4803 3481318 - 3481346 + T 70 -3.1 -5.32599 | opp_overlap 3481305 AATAAAATATAAAAA CGACAGAGTACTT AAT AATGGCTCTGTTG TTTTTATATTTTATC CLK_2594 3482993 - 3481365 - | sigma-54 dependent transcriptional regulator TERM 4804 3482808 - 3482820 + g 77 -4.9 -5.20606 | TATACTTATTTTACT TTCTA CCT TAGAA TTTTTATTAATCTTT TERM 4805 3483235 - 3483218 - R 75 -5.7 -5.02476 | ACATTCTCTAAAAAA TTATGTA TTTA TACATAA TGCAGCATGGGAATA TERM 4806 3483287 - 3483257 - R 87 -6.3 -5.80364 | opp_overlap 3483257 3483260 ATGGGAATAAAAAAA GAATGTGATATAT TATTT ATATTTCACATCC TTTTTTATATGACTA TERM 4807 3483257 - 3483287 + r 72 -4.1 -5.38047 | opp_overlap 3483257, overlap 3483260 ATGGGAATAAAAAAA GAATGTGATATAT TATTT ATATTTCACATCC TTTTTTATATGACTA CLK_2595 3484356 - 3483349 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLK_2596 3485148 - 3484369 - | electron transfer flavoprotein, beta subunit/FixA family protein bcd 3486299 - 3485160 - | butyryl-CoA dehydrogenase TERM 4808 3485619 - 3485631 + g 75 -4.9 -5.08255 | AAATCCTTTTCCTTC TTTAC CAA GTAAA TTTTCTTTTGGAACT TERM 4809 3485915 - 3485941 + g 71 -2.3 -5.43866 | CATCTGTACCAGCAT TAGGTTCTGTT AAACC AAAAGCACCTA TTTTTTTACCACTTA TERM 4810 3486260 - 3486270 + g 72 -5.4 -4.81814 | ATTCCATTAGCATCT GCTT AAC AAGC TTTTGTTCTGGTGAT TERM 4811 3486380 - 3486430 + r 78 -8.1 -3.90761 | gap 1, opp_overlap 3486387, overlap 3486385 3486387 TAAAAATTTGTATTA TATCTA-ATTGCATCATTAAAATA AATT TATTTTAATGATGCAATGTTAATA TTATTCTATAAATTG TERM 4812 3486385 - 3486424 + r 100 -14 -3.49298 | opp_overlap 3486387, overlap 3486380 3486387 ATTTGTATTATATCT AATTGCATCATTAAAATA AATT TATTTTAATGATGCAATG TTAATATTATTCTAT TERM 4813 3486387 - 3486422 + r 100 -16.6 -3.3056 | opp_overlap 3486387, overlap 3486385 3486380 TTGTATTATATCTAA TTGCATCATTAAAATA AATT TATTTTAATGATGCAA TGTTAATATTATTCT TERM 4814 3486422 - 3486387 - R 100 -16.6 -3.14468 | opp_overlap 3486385 3486380 3486387 TTGTATTATATCTAA TTGCATCATTAAAATA AATT TATTTTAATGATGCAA TGTTAATATTATTCT CLK_2598 3487670 - 3486492 - | thiolase TERM 4815 3486764 - 3486775 + g 78 -3 -5.64006 | overlap 3486770 CTATTTTTAGATTTG CTTT TTCT AAAG TTTTTTTAGTTGCAT hbd 3488525 - 3487695 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 4816 3488342 - 3488352 + g 89 -4 -5.97979 | TAACTGTTATTCTCT TGAT GCA ATCA TTTTTTTCTTCTTCT TERM 4817 3488390 - 3488401 + g 78 -4.4 -5.47964 | TTCCTTTTTTAACTT GCTT ATCA AAGC TTTTTATTATTTTAT crt 3489338 - 3488556 - | 3-hydroxybutyryl-CoA dehydratase TERM 4818 3489740 - 3489711 - R 100 -8.1 -5.60993 | opp_overlap 3489711, overlap 3489692 TTTTGTATAAAAAAA TAACTTAGAATAA TATA TCATCCTAAGTTA TTTTAAAAATTTTTA CLK_2601 3489971 - 3489753 - | hypothetical protein CLK_2602 3491112 - 3490015 - | GIY-YIG domain-containing protein TERM 4819 3490919 - 3490936 + g 74 -2.1 -5.61689 | GTATCTGTACATATA TATTGAA AATC TTTAATA TTTTTTATTAGTTTT TERM 4820 3491323 - 3491276 - R 84 -8.7 -4.28432 | opp_overlap 3491275 3491320 AAGTTCAATTTAAAA TGTACCCTATAGTGTAGAC TTTTTTAATT ATCTACTCTATAGAGTACA CCTTGTAATTTACTA CLK_2603 3492680 - 3491388 - | xanthine/uracil permease family protein TERM 4821 3491782 - 3491770 - G 74 -6.3 -4.37886 | opp_overlap 3491770 GCACTCTCTACAAAA GTACT AAC AGTAC TTGTTCCTAAGCAAG CLK_2604 3493978 - 3493082 - | HDIG domain-containing protein TERM 4822 3493921 - 3493935 + g 72 -4.4 -5.03715 | TTTTCTTTAGTATCA TAAATT GAG AATTTA TTTTTTCACCGTGCT TERM 4823 3494037 - 3494013 - R 87 -6.6 -5.41143 | opp_overlap 3493992 3494010 3494013 TATTTTGTAAAAAAA TAAAGGTAAT ATAAA ATCACCTTTA TTCTTTATCTTATTT CLK_2605 3494199 - 3494047 - | hypothetical protein TERM 4824 3494504 - 3494562 + r 90 -10.4 -3.38604 | gap 1, opp_overlap 3494512 3494536 3494537 3494555 ATCATATTTTAATTT TTATATTATTTTTAACATAAAATACAA ATCAAC TTAT-TTTTATGTTAAAAATAATATAA TTAGTGCTTTTGATA TERM 4825 3494895 - 3494938 + r 93 -12.1 -3.12847 | gap 1, opp_overlap 3494895 3494897, overlap 3494897 TAAGCCAAAAAAAAA T-ACTCCTACAAATAGCAAT ATAAA ACTGCTATTTGTAGGAGTCA TTAACTCTACGCATT TERM 4826 3494937 - 3494895 - R 100 -15.9 -6.15259 | opp_overlap 3494895 3494897, overlap 3494897 TAAGCCAAAAAAAAA TACTCCTACAAATAGCAAT ATAAA ACTGCTATTTGTAGGAGTC ATTAACTCTACGCAT TERM 4827 3494897 - 3494935 + r 100 -16.3 -2.77182 | opp_overlap 3494895 3494897, overlap 3494895 AGCCAAAAAAAAATA CTCCTACAAATAGCAAT ATAAA ACTGCTATTTGTAGGAG TCATTAACTCTACGC TERM 4828 3494935 - 3494897 - R 100 -18.5 -4.70383 | opp_overlap 3494897 3494895, overlap 3494895 AGCCAAAAAAAAATA CTCCTACAAATAGCAAT ATAAA ACTGCTATTTGTAGGAG TCATTAACTCTACGC TERM 4829 3494990 - 3495000 + r 70 -4 -5.20606 | AAAATTCTTTTATAT CTTA GCA TAAG TTTTTATTAATGTTT lgt 3495805 - 3495041 - | prolipoprotein diacylglyceryl transferase TERM 4830 3495187 - 3495176 - G 71 -3 -5.24129 | CCCCTCTATAAAAAA TCTT CCTA AAGA ATATAATCCTATGTA TERM 4831 3495929 - 3495884 - R 100 -18.3 -3.66921 | opp_overlap 3495886 3495894, overlap 3495894 3495914 AATTCTAATTTTAAA GTTTAATAAATATTAATTTTA ATCA TAAAATTAATATTTATTAAAC TCTAGCCCTATTATC TERM 4832 3495919 - 3495894 - R 78 -7.9 -4.23104 | opp_overlap 3495886 3495894, overlap 3495884 3495914 TTAAAGTTTAATAAA TATTAATTTTA ATCA TAAAATTAATA TTTATTAAACTCTAG TERM 4833 3495894 - 3495919 + r 78 -7.9 -4.19678 | opp_overlap 3495894 3495884 3495914, overlap 3495886 TTAAAGTTTAATAAA TATTAATTTTA ATCA TAAAATTAATA TTTATTAAACTCTAG CLK_2607 3496477 - 3496013 - | phosphodiesterase CLK_2608 3496885 - 3496520 - | hypothetical protein CLK_2609 3497016 - 3497765 + | glycerophosphoryl diester phosphodiesterase CLK_2610 3500053 - 3498047 - | methyl-accepting chemotaxis protein TERM 4834 3498313 - 3498333 + g 79 -7.7 -4.2717 | opp_overlap 3498313 TAGATTTTGTTATAA TATCAAAGG ATT TCTTTGATA TTTTCATAGCATCAT TERM 4835 3500232 - 3500198 - R 100 -11.8 -5.46698 | opp_overlap 3500198 3500203, overlap 3500203 TCTAAAATGAAAAAA TAAAAGAGTTACTA AAATTAA TAGTAACTCTTTTA TGATTATATTTAGAT TERM 4836 3500198 - 3500232 + r 90 -11.8 -2.99459 | opp_overlap 3500198 3500203, overlap 3500203 TCTAAAATGAAAAAA TAAAAGAGTTACTA AAATTAA TAGTAACTCTTTTA TGATTATATTTAGAT TERM 4837 3500203 - 3500227 + r 79 -7.3 -4.60977 | opp_overlap 3500198 3500203, overlap 3500198 AATGAAAAAATAAAA GAGTTACTA AAATTAA TAGTAACTC TTTTATGATTATATT TERM 4838 3500227 - 3500203 - R 91 -7.3 -5.47846 | opp_overlap 3500203 3500198, overlap 3500198 AATGAAAAAATAAAA GAGTTACTA AAATTAA TAGTAACTC TTTTATGATTATATT CLK_2611 3500794 - 3500249 - | rubredoxin/rubrerythrin TERM 4839 3501396 - 3501426 + r 74 -5 -5.10516 | opp_overlap 3501396, overlap 3501420 CTATGTTTTAATAAA TTATTTAAATATGA TTT TTATATTGAAATAA TTTTCTTTAATTTTT pflA 3502111 - 3501413 - | pyruvate formate-lyase activating enzyme TERM 4840 3502180 - 3502134 - R 100 -14.8 -3.39895 | opp_overlap 3502130 3502142, overlap 3502137 3502140 CTCCTTATCAAGTAA TTATAATACTCAGATGAAGAAT ATT ACTCTCCACCTGAGTATTAGAA AAACTTATCTAGGGC TERM 4841 3502177 - 3502137 - R 100 -16.5 -2.85896 | opp_overlap 3502130 3502142, overlap 3502134 3502140 CTTATCAAGTAATTA TAATACTCAGATGAAGAAT ATT ACTCTCCACCTGAGTATTA GAAAAACTTATCTAG TERM 4842 3502174 - 3502140 - R 100 -13.8 -3.57128 | opp_overlap 3502130 3502142, overlap 3502137 3502134 ATCAAGTAATTATAA TACTCAGATGAAGAAT ATT ACTCTCCACCTGAGTA TTAGAAAAACTTATC pfl 3504519 - 3502291 - | formate acetyltransferase 1 TERM 4843 3504164 - 3504180 + g 70 -5.9 -4.24726 | opp_overlap 3504167, overlap 3504154 TTTAACTTATAATCA TAAGCTT CTA AAGCTTG TTTTACCATTCTTAT TERM 4844 3504854 - 3504827 - R 90 -6.2 -5.88197 | overlap 3504819 TTAAAGATAAAAAAA CCCCCTGGAC TTTTTATT GCCCAGGCGG TCGACACTCTAACTT CLK_2614 3505283 - 3505032 - | hypothetical protein TERM 4845 3505401 - 3505379 - R 78 -4.3 -5.55698 | opp_overlap 3505379 3505384 TATAACCTAAAAAAA TAAAATTAG GTTCT CTAATTCTA TTTACGAGAAATAAA CLK_2615 3506047 - 3505478 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 CLK_2616 3506828 - 3506214 - | putative lipoprotein TERM 4846 3506990 - 3507006 + H 82 -2.4 -6.19302 | opp_overlap 3506990 TTTATTTAACGATAA TTATTT TTGAC AAATAA TTTTTTTTATTATAT CLK_2617 3507055 - 3507483 + | FUR family transcriptional regulator TERM 4847 3507488 - 3507526 + T 100 -13.6 -3.45087 | opp_overlap 3507488 3507491 3507494, overlap 3507491 3507494 CAGAAAATTAGTAAT TAATAAGCACTTAAAT CTATCTA ATTTAAGTGCTTATTA TATTGTTGCCTTAAT TERM 4848 3507526 - 3507488 - T 100 -14.3 -2.63109 | opp_overlap 3507488 3507491 3507494, overlap 3507491 3507494 CAGAAAATTAGTAAT TAATAAGCACTTAAATC TATCT AATTTAAGTGCTTATTA TATTGTTGCCTTAAT TERM 4849 3507491 - 3507523 + T 100 -10.9 -3.84992 | opp_overlap 3507488 3507491 3507494, overlap 3507488 3507494 AAAATTAGTAATTAA TAAGCACTTAAAT CTATCTA ATTTAAGTGCTTA TTATATTGTTGCCTT TERM 4850 3507523 - 3507491 - T 95 -11.6 -3.44825 | opp_overlap 3507491 3507488 3507494, overlap 3507488 3507494 AAAATTAGTAATTAA TAAGCACTTAAATC TATCT AATTTAAGTGCTTA TTATATTGTTGCCTT TERM 4851 3507520 - 3507494 - T 81 -8.9 -3.84246 | opp_overlap 3507491 3507488 3507494, overlap 3507491 3507488 ATTAGTAATTAATAA GCACTTAAATC TATCT AATTTAAGTGC TTATTATATTGTTGC TERM 4852 3507494 - 3507520 + T 79 -8.2 -4.03767 | opp_overlap 3507494 3507491 3507488, overlap 3507491 3507488 ATTAGTAATTAATAA GCACTTAAAT CTATCTA ATTTAAGTGC TTATTATATTGTTGC CLK_2618 3508787 - 3507552 - | extracellular solute-binding protein TERM 4853 3507894 - 3507906 + g 70 -6.3 -4.1958 | opp_overlap 3507894 3507893 TATAGAATTTATAAT TACAG GTT CTGTA TTGTTTAATTTGTCT TERM 4854 3508513 - 3508541 + g 76 -2.5 -5.5454 | overlap 3508515 AGCTTTATCATTTCA TTTCTTGATATAA ATA TTAAGTCAGGAGA TTTTTCTTTCTTTAA CLK_2619 3508888 - 3509823 + | hypothetical protein TERM 4855 3509851 - 3509833 - T 100 -14.6 -5.67529 | AATTAAAAACAAAAA GGGACCGT TTT ACGGTCCC AAGGGGGATGGGGGG CLK_2620 3510939 - 3509983 - | hypothetical protein TERM 4856 3511140 - 3511117 - R 83 -6.2 -5.44721 | gap 1 ATTATGCTAAAAAAA TAGAAAGAGCT TTA AG-TCTTTCTA TAAAAAGTAGTATTT CLK_2621 3511576 - 3511154 - | hypothetical protein TERM 4857 3511395 - 3511427 + g 70 -6.5 -4.18294 | opp_overlap 3511398 3511401, overlap 3511392 3511401 3511407 GTTTCATCATCATCA TAATCATCATCATAA TTA TTATGATGATTATAA TTATTATTTCCTTTA TERM 4858 3511424 - 3511398 - G 73 -8.2 -3.45023 | opp_overlap 3511395 3511392 3511401 3511407, overlap 3511401 TCATCATCATCATAA TCATCATCATAA TTA TTATGATGATTA TAATTATTATTTCCT TERM 4859 3511421 - 3511401 - G 76 -9.9 -2.87243 | opp_overlap 3511395 3511392 3511401 3511407, overlap 3511398 TCATCATCATAATCA TCATCATAA TTA TTATGATGA TTATAATTATTATTT TERM 4860 3511401 - 3511421 + g 83 -9.9 -3.65786 | opp_overlap 3511401 3511398, overlap 3511395 3511392 3511407 TCATCATCATAATCA TCATCATAA TTA TTATGATGA TTATAATTATTATTT TERM 4861 3511605 - 3511623 + r 81 -10.3 -2.6563 | opp_overlap 3511608, overlap 3511602 3511602 TTAAATTAATGGCAA GGAGGGT AATGA ACCCTCC TAAGTTATTAGCAGC CLK_2622 3511876 - 3511631 - | hypothetical protein TERM 4862 3511695 - 3511679 - G 72 -6.7 -4.13244 | opp_overlap 3511679 3511681, overlap 3511676 GCATAAGAAGAATAA TACTATT ATA AATAGTA TACTATTGTCTATTT CLK_2623 3512359 - 3511928 - | hypothetical protein TERM 4863 3512491 - 3512535 + r 93 -13.3 -2.78384 | opp_overlap 3512491 3512496, overlap 3512496 3512505 AAAGATTTCAAAAAA CAAAAGCAATAAAATATCCAT AAA ATAGATATTTTATTGCTTTTA TCTAATACACAAGCA TERM 4864 3512535 - 3512491 - R 100 -17.7 -5.10077 | opp_overlap 3512491 3512496 3512505, overlap 3512496 AAAGATTTCAAAAAA CAAAAGCAATAAAATATCCAT AAA ATAGATATTTTATTGCTTTTA TCTAATACACAAGCA TERM 4865 3512496 - 3512530 + r 100 -13.2 -4.57353 | opp_overlap 3512491 3512496, overlap 3512491 3512505 TTTCAAAAAACAAAA GCAATAAAATATCCAT AAA ATAGATATTTTATTGC TTTTATCTAATACAC TERM 4866 3512530 - 3512496 - R 100 -15.4 -5.42198 | opp_overlap 3512496 3512491 3512505, overlap 3512491 TTTCAAAAAACAAAA GCAATAAAATATCCAT AAA ATAGATATTTTATTGC TTTTATCTAATACAC CLK_2624 3513303 - 3512578 - | CAAX amino terminal protease family protein TERM 4867 3513272 - 3513244 - G 72 -4.1 -5.0538 | TTTTATTCTAAAAAA TAATATTATAG GGGGTAT CCATAATATTA TAAATGTAAGAATGC CLK_2625 3513911 - 3513327 - | GTP-binding protein TERM 4868 3513570 - 3513580 + g 82 -4 -5.54192 | opp_overlap 3513570 ATGCCTACTATCAAC TAGT AAA ACTA TTTTTTTAAGTTGAT lon 3516247 - 3513926 - | ATP-dependent protease La TERM 4869 3514005 - 3514027 + g 70 -4.2 -4.90917 | overlap 3514007 ATTTTATTCTTTACA GTTTTAGGAA TAT TTCTTAAATC TTTTTCATTAGCTTT lonB 3518064 - 3516385 - | ATP-dependent protease LonB TERM 4870 3518162 - 3518188 + r 100 -15.4 -4.6856 | opp_overlap 3518162 TATAATAGTAAAAAA TAACACCAAGAT AAA ATCTTGGTGTTA TTTTTACGCTGTTTC TERM 4871 3518188 - 3518162 - R 100 -15.4 -5.30189 | opp_overlap 3518162 TATAATAGTAAAAAA TAACACCAAGAT AAA ATCTTGGTGTTA TTTTTACGCTGTTTC clpX 3519481 - 3518192 - | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 4872 3518493 - 3518507 + g 72 -5 -4.75776 | AACAATTTCTTATAT TGCTTT ACA AGAGCA TTTTTAGGTTCAGTT clpP 3520085 - 3519501 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 4873 3520186 - 3520153 - R 75 -6.8 -4.37527 | opp_overlap 3520155 3520157, overlap 3520154 3520155 3520157 TTATAATTATTAAAA CTTAGTTGCCAGAA AATATA TCCTGGCAACTATA TCATTATCTATTATT TERM 4874 3520185 - 3520154 - R 72 -8.1 -3.21793 | opp_overlap 3520155 3520157, overlap 3520153 3520155 3520157 TATAATTATTAAAAC TTAGTTGCCAGAA AATATA TCCTGGCAACTAT ATCATTATCTATTAT TERM 4875 3520184 - 3520155 - R 85 -11.6 -2.52353 | opp_overlap 3520155 3520157, overlap 3520154 3520153 3520157 ATAATTATTAAAACT TAGTTGCCAGAA AATATA TCCTGGCAACTA TATCATTATCTATTA TERM 4876 3520155 - 3520184 + r 78 -9.4 -3.01979 | opp_overlap 3520155 3520154 3520153 3520157, overlap 3520157 ATAATTATTAAAACT TAGTTGCCAGAA AATATA TCCTGGCAACTA TATCATTATCTATTA TERM 4877 3520182 - 3520157 - R 80 -9.8 -2.78897 | opp_overlap 3520155 3520157, overlap 3520155 3520154 3520153 AATTATTAAAACTTA GTTGCCAGAA AATATA TCCTGGCAAC TATATCATTATCTAT tig 3521503 - 3520211 - | trigger factor TERM 4878 3520347 - 3520360 + g 74 -2.4 -5.54338 | TGACCATATTGTTTA GCTA CTTCCA TAGC TTTTTCTTTTAATTC CLK_2631 3522466 - 3521681 - | AP endonuclease CLK_2632 3523389 - 3522577 - | hypothetical protein TERM 4879 3522833 - 3522849 + g 76 -9.5 -3.06837 | overlap 3522832 3522835 AAATAATCTTGCTTT GATGCTA ATA TAGCATC CTTTTGAAAAGTTGT TERM 4880 3523255 - 3523278 + g 71 -7.6 -3.44284 | opp_overlap 3523263, overlap 3523253 ACTATTTTTTATTTT TTTACCAATA CCAT TGTTGGTAAA TATTATTACTAAAGA TERM 4881 3523514 - 3523489 - R 73 -3.5 -5.4593 | TCAAAACAATAAAAA TTAATAACCAT TTTC ATAATTATTAA AGTAAAATTAAGTTT TERM 4882 3523587 - 3523559 - R 100 -9.1 -5.79588 | opp_overlap 3523558 3523557 TTAAAACTAAAAAAA TGTCTCAAAAT TAAATCT ATTTTGAGACA ACTCTTATTTTAAAA pyrE 3524179 - 3523604 - | orotate phosphoribosyltransferase pyrD 3525109 - 3524213 - | dihydroorotate oxidase pyrK 3525864 - 3525109 - | dihydroorotate dehydrogenase, electron transfer subunit pyrF 3526860 - 3526009 - | orotidine 5'-phosphate decarboxylase TERM 4883 3526268 - 3526280 + g 74 -9.1 -2.88579 | opp_overlap 3526266 3526263 GTACATCCAACTACT GCTCC TAT GGAGC TATATCCACAATTGC pyrC 3528073 - 3526883 - | dihydroorotase, multifunctional complex type TERM 4884 3527944 - 3527916 - G 100 -12.6 -3.78022 | opp_overlap 3527914 TGCATATCTATGAAA GATGGAAGAAGA GTTAA TCCTCTTCCATC AAATATTTCACAATT pyrI 3528535 - 3528095 - | aspartate carbamoyltransferase, regulatory subunit pyrB 3529460 - 3528537 - | aspartate carbamoyltransferase TERM 4885 3529511 - 3529539 + r 72 -8.9 -2.69834 | opp_overlap 3529513, overlap 3529502 3529510 3529503 TTTAAAGGTATAAAA AATGCCTTCCTTT TTT AAAGGAAGGCACA ATTATACTCTAGTTT TERM 4886 3529537 - 3529513 - R 100 -15.9 -5.33866 | opp_overlap 3529502 3529511 3529510 3529503 TAAAGGTATAAAAAA TGCCTTCCTTT TTT AAAGGAAGGCA CAATTATACTCTAGT CLK_2640 3530473 - 3529715 - | putative CoA-substrate-specific enzyme activase CLK_2641 3530747 - 3530496 - | hypothetical protein TERM 4887 3530950 - 3530915 - R 100 -14.1 -4.09173 | opp_overlap 3530911 3530923, overlap 3530890 3530889 ATATAACATGAGAAA CCAGGAGTGAAACCT GTAATG AGGTCTCTCTCCTGG ATAAAATTTTTCCAG CLK_2642 3532334 - 3531075 - | putative R-2-hydroxyglutaryl-CoA dehydratase subunit CLK_2643 3533611 - 3532463 - | putative R-2-hydroxyglutaryl-CoA dehydratase subunit TERM 4888 3532740 - 3532754 + g 78 -6.4 -4.76075 | TATCTTTCTGTTAAT GCATCT ATG GGATGC TTTTCTTCATCTACT CLK_2644 3534055 - 3533723 - | hypothetical protein CLK_2645 3534850 - 3534101 - | ABC transporter, ATP-binding protein TERM 4889 3534524 - 3534537 + g 80 -2.4 -5.72254 | TAACCTATCTATAGC TTCC CTTTTA GGAA TTTTTTGTTGTTTCA CLK_2646 3534987 - 3534850 - | hypothetical protein CLK_2647 3535569 - 3535027 - | ABC transporter, permease protein CLK_2648 3536153 - 3535617 - | hypothetical protein CLK_2649 3536423 - 3536205 - | hypothetical protein CLK_2650 3537530 - 3536430 - | putative lipoprotein TERM 4890 3537501 - 3537514 + g 85 -2.5 -5.86609 | TAAAACTAATGTACA TAATA AGCC TATTA TTTTTCTTTTTTTCA CLK_2651 3538012 - 3537548 - | putative lipoprotein CLK_2652 3539119 - 3538028 - | putative permease TERM 4891 3538515 - 3538499 - G 77 -8.1 -3.86346 | GTATTGTTGTATAAA TTCTTGT GGC ACAAGAA CTAAGAGTATTCCAG CLK_2653 3539379 - 3539119 - | hypothetical protein TERM 4892 3539169 - 3539183 + g 93 -5.8 -6.11229 | TTTCTATTATTTCTT TAGATA ACT TATCTA TTTTTTTCTTTTCAT TERM 4893 3539513 - 3539533 + r 75 -8.4 -3.60805 | opp_overlap 3539513 ATTTTCAATAAAAAA GAGATGAT TTAAC ATCATCTC TTTAAACTGCAATAT TERM 4894 3539533 - 3539513 - R 100 -8.4 -5.45652 | opp_overlap 3539513 ATTTTCAATAAAAAA GAGATGAT TTAAC ATCATCTC TTTAAACTGCAATAT CLK_2654 3539765 - 3539535 - | sodium:dicarboxylate symporter family protein TERM 4895 3539858 - 3539887 + r 76 -9.5 -2.80474 | opp_overlap 3539858 3539861, overlap 3539857 3539848 3539861 TTAACCATAAAAAAA TAACGCTTATATA AATC TATATAGGCGTTG ATTTAGCATGTTATA TERM 4896 3539887 - 3539858 - R 84 -5.1 -5.71983 | opp_overlap 3539858 3539857 3539848 3539861, overlap 3539861 TTAACCATAAAAAAA TAACGCTTATATA AATC TATATAGGCGTTG ATTTAGCATGTTATA TERM 4897 3539884 - 3539861 - R 78 -6.8 -4.9041 | opp_overlap 3539861 3539858 3539857 3539848, overlap 3539858 ACCATAAAAAAATAA CGCTTATATA AATC TATATAGGCG TTGATTTAGCATGTT TERM 4898 3539861 - 3539884 + r 79 -9 -3.54146 | opp_overlap 3539858 3539861, overlap 3539858 3539857 3539848 ACCATAAAAAAATAA CGCTTATATA AATC TATATAGGCG TTGATTTAGCATGTT TERM 4899 3540341 - 3540355 + r 70 -7.8 -3.33261 | opp_overlap 3540351 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCATCT TERM 4900 3540590 - 3540610 + r 82 -8.4 -4.47183 | CGTTATGTCTTAATC CTTCTGAA CTCCA TTCAGAAG TTTATTTAAATGGTG TERM 4901 3541084 - 3541098 + r 70 -7.8 -3.33261 | opp_overlap 3541094 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCATCT TERM 4902 3541303 - 3541319 + r 76 -8.1 -3.71124 | opp_overlap 3541302 3541300 3541303 GCAGATATAAAACAT CAAAATC TTG GATTTTG TTATGTCTTAATCCT TERM 4903 3541319 - 3541303 - R 71 -8.1 -2.94281 | opp_overlap 3541303, overlap 3541302 3541300 GCAGATATAAAACAT CAAAATC TTG GATTTTG TTATGTCTTAATCCT TERM 4904 3541333 - 3541353 + r 75 -8.4 -3.55122 | overlap 3541337 TGTTATGTCTTAATC CTTCTGAA CTCCA TTCAGAAG TTCATTTAAATGGTG TERM 4905 3541738 - 3541752 + r 70 -7.8 -3.33261 | opp_overlap 3541748 CGAACCCCTGGCCCA CGCCTT AGA AGGGCG TTGCTCTATCCATCT CLK_2677 3542559 - 3542089 - | phosphodiesterase CLK_2678 3543176 - 3542577 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 4906 3542711 - 3542701 - G 72 -5.4 -4.83243 | GGTATATAAAATAAA GGAT CAT ATCC AAATCCATCCTCTCC TERM 4907 3543098 - 3543115 + g 70 -4.3 -5.00611 | TCGATAAAGCATCTA TATTAAA TTTT TTTAATA TTTCTTTTATTTCTC TERM 4908 3543816 - 3543798 - g 89 -4 -5.95539 | opp_overlap 3543798, overlap 3543806 TTTCAAAGAAAAAAA TAAAAAAT TTA ATTTTTCA AATCAATGCTTTTTA CLK_2679 3543280 - 3544653 + | hypothetical protein TERM 4909 3544646 - 3544692 + F 100 -21.4 -5.13473 | opp_overlap 3544650, overlap 3544650 CTTTATATACACTTA AAAATTAATATGAGGATATTGC AAT GCAATATCCTCATATTAATTTA TTTTTTGGATATAAT TERM 4910 3544688 - 3544650 - f 100 -22.2 -4.73448 | opp_overlap 3544646 3544650 ATATACACTTAAAAA TTAATATGAGGATATTGC AAT GCAATATCCTCATATTAA TTTATTTTTTGGATA TERM 4911 3544650 - 3544688 + F 100 -22.2 -5.0666 | opp_overlap 3544650, overlap 3544646 ATATACACTTAAAAA TTAATATGAGGATATTGC AAT GCAATATCCTCATATTAA TTTATTTTTTGGATA CLK_2680 3544766 - 3544921 + | hypothetical protein CLK_2681 3546486 - 3544924 - | solute-binding family 5 protein TERM 4912 3546404 - 3546414 + g 84 -6.8 -5.27709 | CTTATTCCCTCATCT GAGG TGA CCTC TTTGTTTTTTTCTAC TERM 4913 3546600 - 3546625 + r 70 -4.7 -4.83722 | opp_overlap 3546602, overlap 3546602 TATTTTCCATAAAAA AATCCCCACAT TTTT ATGTGAGGATC TTTTATTCTAATATT TERM 4914 3546602 - 3546623 + r 73 -7.3 -4.02119 | opp_overlap 3546602, overlap 3546600 TTTTCCATAAAAAAA TCCCCACAT TTTT ATGTGAGGA TCTTTTATTCTAATA TERM 4915 3546623 - 3546602 - R 100 -9.5 -5.60993 | opp_overlap 3546602 3546600 TTTTCCATAAAAAAA TCCCCACAT TTTT ATGTGAGGA TCTTTTATTCTAATA gatB 3548070 - 3546640 - | glutamyl-tRNA(Gln) amidotransferase, B subunit TERM 4916 3547417 - 3547396 - G 70 -8.9 -2.65993 | opp_overlap 3547400, overlap 3547400 ATCATATTCATATGA TAAAGCTTT CTCC AAAGCTTTA AAAGAATTCATATTT TERM 4917 3548022 - 3548046 + g 70 -8.7 -2.6574 | opp_overlap 3548028 ATATTTTAGTATTTG TTGAAAGTTCA GCA TGAACTTCCAA TCCTATAACTGCTTC gatA 3549564 - 3548107 - | glutamyl-tRNA(Gln) amidotransferase, A subunit gatC 3549888 - 3549601 - | glutamyl-tRNA(Gln) amidotransferase, C subunit CLK_2685 3551235 - 3550024 - | sodium:dicarboxylate symporter family protein TERM 4918 3551254 - 3551280 + r 88 -8.2 -4.8622 | ACTCCCCCCTTAGTT CATATGTATTTA TAC TATATACATATG TTTTTGATTAAAACG TERM 4919 3551460 - 3551515 + r 90 -12.7 -2.65174 | opp_overlap 3551470, overlap 3551465 3551470 ATATATGAGTATTTA TAAATAAAAATCCTATTTAGTTA-AAT TAAC ATTATAACTAAATAGGA-TTTTATTTA TAGATTAATTATTTT TERM 4920 3551465 - 3551511 + r 95 -10.7 -3.99898 | gap 1, opp_overlap 3551470, overlap 3551460 3551470 TGAGTATTTATAAAT AAAAATCCTATTTAGTTA-AAT TAAC ATTATAACTAAATAGGATTTTA TTTATAGATTAATTA TERM 4921 3551506 - 3551470 - R 100 -10.6 -5.38958 | gap 1, opp_overlap 3551470 3551465 3551460 ATTTATAAATAAAAA TCCTATTTAGTTA-AAT TAAC ATTATAACTAAATAGGA TTTTATTTATAGATT TERM 4922 3551470 - 3551506 + r 100 -10.6 -5.01553 | gap 1, opp_overlap 3551470, overlap 3551465 3551460 ATTTATAAATAAAAA TCCTATTTAGTTA-AAT TAAC ATTATAACTAAATAGGA TTTTATTTATAGATT CLK_2686 3551879 - 3551610 - | hypothetical protein ligA 3553974 - 3551980 - | DNA ligase, NAD-dependent TERM 4923 3552125 - 3552111 - G 74 -7.2 -4.00782 | TTACACTACTAGAAA CTTTAG CTC CTAAAG ACTGTAATTTATCTT TERM 4924 3553813 - 3553782 - G 78 -9.6 -3.11564 | gap 1, opp_overlap 3553782, overlap 3553780 TAAATTCACCTAATA TTTTATCACCAACCC TTT GGGTTGGTGA-ATAA GGTAATGTAACTTCA TERM 4925 3553782 - 3553815 + g 78 -10.5 -2.66912 | gap 1, opp_overlap 3553782 3553780 TAAATTCACCTAATA TTTTA-TCACCAACCC TTT GGGTTGGTGAATAAGG TAATGTAACTTCAGT pcrA 3556202 - 3553986 - | ATP-dependent DNA helicase PcrA TERM 4926 3554469 - 3554481 + g 72 -6.3 -4.19817 | CAATGATTGCGTTCC TGGAA ATA TTCCA TTTTCCATACCTACC TERM 4927 3554663 - 3554650 - G 81 -8.1 -4.07885 | GATTCTCTTTCAAAA TCCGC TGCT GCGGA AACTAATTCTTTCAG TERM 4928 3556312 - 3556291 - R 100 -11.7 -4.39571 | opp_overlap 3556285 CTTATAAATTTAAAA TGTGCTAGT AAAA ACTAGCACA CAATAATTTATTCTA CLK_2689 3556628 - 3556329 - | TrpR family protein TERM 4929 3556766 - 3556735 - R 80 -3.2 -5.97979 | gap 1, opp_overlap 3556742, overlap 3556740 ATAATAATAAAAAAA TAAAACAGCCTAT TGGGGTT ATAGGCTG-CTTA CAATAAATAAAAAGG TERM 4930 3556762 - 3556740 - R 100 -7.8 -5.64328 | opp_overlap 3556742, overlap 3556735 AATAAAAAAATAAAA CAGCCTAT TGGGGTT ATAGGCTG CTTACAATAAATAAA CLK_2690 3557642 - 3556926 - | RNA pseudouridine synthase family protein TERM 4931 3557119 - 3557129 + g 70 -4 -5.00196 | CTTACTTCTGATTCC TCAT TAA ATGA TTTTATTATTTCAAG TERM 4932 3557728 - 3557696 - R 95 -10.7 -4.36554 | opp_overlap 3557702, overlap 3557702 TACCATTATAACAAA TTTAAAGGAAAGTGC AGG GCACTTTCCTTTTTA TACTCCATAATTTTT TERM 4933 3557722 - 3557702 - R 100 -14.1 -3.94868 | opp_overlap 3557702, overlap 3557696 TATAACAAATTTAAA GGAAAGTGC AGG GCACTTTCC TTTTTATACTCCATA TERM 4934 3557702 - 3557722 + r 100 -14.1 -4.9218 | opp_overlap 3557702 3557696 TATAACAAATTTAAA GGAAAGTGC AGG GCACTTTCC TTTTTATACTCCATA CLK_2691 3558397 - 3557726 - | Slt family transglycosylase CLK_2692 3560459 - 3558456 - | two component regulator CLK_2693 3560593 - 3560760 + | hypothetical protein CLK_2694 3561608 - 3561174 - | YaiI/YqxD family protein pgi 3562971 - 3561619 - | glucose-6-phosphate isomerase TERM 4935 3563013 - 3563038 + r 77 -4.7 -5.39221 | opp_overlap 3563015, overlap 3563014 3563015 ACATTTTAATATAAA AAGCTGTTGAA GTAA TTCAACAGCCA TTTTTTCATTATTCT TERM 4936 3563014 - 3563037 + r 76 -8.2 -3.81092 | opp_overlap 3563015, overlap 3563013 3563015 CATTTTAATATAAAA AGCTGTTGAA GTAA TTCAACAGCC ATTTTTTCATTATTC TERM 4937 3563015 - 3563036 + r 88 -11.7 -2.87029 | opp_overlap 3563015, overlap 3563014 3563013 ATTTTAATATAAAAA GCTGTTGAA GTAA TTCAACAGC CATTTTTTCATTATT TERM 4938 3563036 - 3563015 - R 100 -11.7 -5.09762 | opp_overlap 3563015 3563014 3563013 ATTTTAATATAAAAA GCTGTTGAA GTAA TTCAACAGC CATTTTTTCATTATT CLK_2696 3563225 - 3563055 - | hypothetical protein TERM 4939 3563529 - 3563541 + r 70 -3.5 -5.44119 | TAATCTCAAAATTAT TTTAT CTT ATAAA TTTTTTTCACATAAA CLK_2697 3564179 - 3563535 - | TetR family transcriptional regulator TERM 4940 3564203 - 3564215 + H 74 -6.3 -4.60924 | CTCCTAACTCATTAT TGACT TAA AGTCA TTTTTCCCCAATTTA CLK_2698 3564410 - 3564943 + | acetyltransferase TERM 4941 3565017 - 3564983 - f 100 -17.5 -4.0802 | opp_overlap 3564983, overlap 3564986 ATTTTAACAAGCAAA CAAGATGATTTCTGT ATTAA ACAGAAATCATCTTG TTTTAATTATATCCA TERM 4942 3564983 - 3565017 + F 100 -17.5 -4.53034 | opp_overlap 3564983 3564986 ATTTTAACAAGCAAA CAAGATGATTTCTGT ATTAA ACAGAAATCATCTTG TTTTAATTATATCCA TERM 4943 3565014 - 3564986 - f 100 -13.4 -4.15577 | opp_overlap 3564983, overlap 3564983 TTAACAAGCAAACAA GATGATTTCTGT ATTAA ACAGAAATCATC TTGTTTTAATTATAT ldhA 3565487 - 3566491 + | D-lactate dehydrogenase ldhA 3567673 - 3566678 - | D-lactate dehydrogenase TERM 4944 3567109 - 3567121 + g 73 -3.5 -5.2166 | CCTCATCTAAGGATT TATAT TCA ATATA TTTTTTAGCTTCTTC TERM 4945 3568038 - 3568079 + r 100 -9.1 -4.92756 | opp_overlap 3568039 3568042 3568050, overlap 3568042 TCATAATATCGTTAA ACTATTATTAAAGTAATAT GAAG ATATTACTTTAATAATTGA TTTCTTTTTCCTAGT TERM 4946 3568078 - 3568039 - R 95 -12.6 -3.61774 | opp_overlap 3568038 3568042, overlap 3568042 3568050 CATAATATCGTTAAA CTATTATTAAAGTAATAT GAAG ATATTACTTTAATAATTG ATTTCTTTTTCCTAG TERM 4947 3568075 - 3568042 - R 91 -12.9 -2.92439 | opp_overlap 3568038 3568042, overlap 3568039 3568050 AATATCGTTAAACTA TTATTAAAGTAATAT GAAG ATATTACTTTAATAA TTGATTTCTTTTTCC TERM 4948 3568042 - 3568075 + r 100 -12.9 -3.86874 | opp_overlap 3568042 3568039 3568050, overlap 3568038 AATATCGTTAAACTA TTATTAAAGTAATAT GAAG ATATTACTTTAATAA TTGATTTCTTTTTCC TERM 4949 3568666 - 3568646 - R 76 -8.5 -3.70102 | opp_overlap 3568646 3568645 3568660, overlap 3568644 AGGGAAAATGAAATA TTTATTAAG ACT CTTAATAAA ATTATATAATATTTA TERM 4950 3568770 - 3568713 - R 100 -16.9 -3.86202 | opp_overlap 3568719 3568724 3568732, overlap 3568715 3568717 3568724 3568732 CTTTATTATATCAAA TAGATATAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTATATTCA CCCTTATTACATTCA TERM 4951 3568768 - 3568715 - R 100 -17.3 -3.51778 | opp_overlap 3568719 3568724 3568732, overlap 3568713 3568717 3568724 3568732 TTATTATATCAAATA GATATAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTATATT CACCCTTATTACATT TERM 4952 3568766 - 3568717 - R 100 -19.9 -3.32803 | opp_overlap 3568719 3568724 3568732, overlap 3568715 3568713 3568724 3568732 ATTATATCAAATAGA TATAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTATA TTCACCCTTATTACA TERM 4953 3568719 - 3568764 + r 100 -20.3 -3.07947 | opp_overlap 3568717 3568715 3568713 3568724 3568732, overlap 3568724 3568732 TATATCAAATAGATA TAAAATATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATATTTTA TATTCACCCTTATTA TERM 4954 3568759 - 3568724 - R 100 -13.6 -4.70534 | opp_overlap 3568724 3568719 3568732, overlap 3568717 3568715 3568713 3568732 CAAATAGATATAAAA TATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATA TTTTATATTCACCCT TERM 4955 3568724 - 3568759 + r 100 -15.8 -4.66938 | opp_overlap 3568717 3568715 3568713 3568724 3568732, overlap 3568719 3568732 CAAATAGATATAAAA TATAAAAAGCAGGCTT TTTA AAGTCTGCTTTTTATA TTTTATATTCACCCT TERM 4956 3568732 - 3568751 + r 100 -8.6 -5.32599 | opp_overlap 3568724 3568717 3568715 3568713 3568732, overlap 3568724 3568719 TATAAAATATAAAAA GCAGGCTT TTTA AAGTCTGC TTTTTATATTTTATA TERM 4957 3568751 - 3568732 - R 87 -6.4 -5.32599 | opp_overlap 3568732 3568724 3568719, overlap 3568724 3568717 3568715 3568713 TATAAAATATAAAAA GCAGGCTT TTTA AAGTCTGC TTTTTATATTTTATA CLK_2701 3569933 - 3568755 - | hypothetical protein TERM 4958 3568983 - 3568994 + g 70 -4.4 -4.90455 | TCTTTTTACTCCTGG CTTC ATAG GAAG TTTTTCTCCATATCT TERM 4959 3570134 - 3570085 - R 100 -11.7 -4.75372 | opp_overlap 3570087 3570098 3570103, overlap 3570087 3570089 3570091 3570094 3570103 ACTATTTATTAAAAA TATATACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCAAGTA AATTAATTAACCTTC TERM 4960 3570087 - 3570132 + r 79 -9.9 -2.60423 | opp_overlap 3570085 3570087 3570089 3570091 3570094 3570103, overlap 3570098 3570103 TATTTATTAAAAATA TATACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCAAG TAAATTAATTAACCT TERM 4961 3570131 - 3570087 - R 100 -11.8 -3.99327 | gap 1, opp_overlap 3570087 3570098 3570103, overlap 3570085 3570089 3570091 3570094 3570103 TATTTATTAAAAATA TATACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCA-A GTAAATTAATTAACC TERM 4962 3570130 - 3570089 - R 100 -16.9 -3.57901 | opp_overlap 3570087 3570098 3570103, overlap 3570087 3570085 3570091 3570094 3570103 TTTATTAAAAATATA TACAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTGCA AGTAAATTAATTAAC TERM 4963 3570128 - 3570091 - R 100 -17.3 -3.35531 | opp_overlap 3570087 3570098 3570103, overlap 3570089 3570087 3570085 3570094 3570103 TATTAAAAATATATA CAAGAAACAAAAGGAGG AAAA CCTCATTTTGTTTCTTG CAAGTAAATTAATTA TERM 4964 3570125 - 3570094 - R 100 -13.2 -3.78699 | opp_overlap 3570087 3570098 3570103, overlap 3570091 3570089 3570087 3570085 3570103 TAAAAATATATACAA GAAACAAAAGGAGG AAAA CCTCATTTTGTTTC TTGCAAGTAAATTAA TERM 4965 3570098 - 3570121 + r 79 -8.2 -4.16842 | opp_overlap 3570094 3570091 3570089 3570087 3570085 3570103, overlap 3570087 3570103 AATATATACAAGAAA CAAAAGGAGG AAAA CCTCATTTTG TTTCTTGCAAGTAAA CLK_2702 3571346 - 3570150 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLK_2703 3572158 - 3571364 - | electron transfer flavoprotein, beta subunit/FixA family protein CLK_2704 3573304 - 3572171 - | acyl-CoA dehydrogenase family protein fldC 3574595 - 3573471 - | R-phenyllactate dehydratase, C subunit fldB 3575820 - 3574597 - | R-phenyllactate dehydratase, B subunit fldI 3576619 - 3575825 - | R-phenyllactate dehydratase activator fldA 3577857 - 3576619 - | E-cinnamoyl-CoA:R-phenyllactate CoA transferase CLK_2709 3579542 - 3577911 - | AMP-binding enzyme TERM 4966 3578557 - 3578575 + g 81 -4.7 -5.39721 | TGTCCATACGCAATC TGAATAT CCCTT ATATTCA TTTTTTCTATAATGC TERM 4967 3579710 - 3579751 + r 100 -11.4 -5.10004 | gap 1, opp_overlap 3579716, overlap 3579716 AATAGAACGAATAAA TTA-AAATTCCAGTAAAAA ATTCA TTTTTACTGGAATTTCTAA TTTTTACTTCTTTTT TERM 4968 3579716 - 3579744 + r 100 -12 -4.27774 | opp_overlap 3579716, overlap 3579710 ACGAATAAATTAAAA TTCCAGTAAAAA ATTCA TTTTTACTGGAA TTTCTAATTTTTACT TERM 4969 3579744 - 3579716 - R 100 -12 -4.68846 | opp_overlap 3579716 3579710 ACGAATAAATTAAAA TTCCAGTAAAAA ATTCA TTTTTACTGGAA TTTCTAATTTTTACT TERM 4970 3579843 - 3579853 + r 79 -4 -5.72616 | overlap 3579838 AGATTCCATCTTATG TTCA ACA TGAA TTTTTTTGTATAAAT brnQ 3581198 - 3580008 - | branched-chain amino acid transport system II carrier protein guaA 3583185 - 3581653 - | GMP synthase guaB 3584652 - 3583198 - | inosine-5'-monophosphate dehydrogenase TERM 4971 3584090 - 3584112 + g 75 -4.3 -5.32599 | opp_overlap 3584090 AGTCCACGTAAATTA TTATCTTTA TCGAC TAAAGGTAA TTTTTCTATTTTATG TERM 4972 3585743 - 3585731 - g 70 -3.5 -5.10877 | AGAAGAAATGAAAAA TTTAA TGT TTAAA CTAGAAGAAACTTAC TERM 4973 3585827 - 3585812 - g 80 -6.2 -4.86133 | TATAGATATGAAAAA TCTTTG GAAA CAAAGA GACAATCATTTTTAA CLK_2713 3585093 - 3585842 + | PP-loop family protein TERM 4974 3585854 - 3585833 - T 75 -7.5 -3.85969 | opp_overlap 3585831 3585833 GAAACAAAGAGACAA TCATTTTTA ATAA TAAAAATGA TATTATATTAACTAC TERM 4975 3585833 - 3585854 + T 70 -7.5 -3.42482 | opp_overlap 3585833, overlap 3585831 GAAACAAAGAGACAA TCATTTTTA ATAA TAAAAATGA TATTATATTAACTAC TERM 4976 3585908 - 3585881 - T 100 -7.9 -5.69262 | opp_overlap 3585881 CTACAAAAATAAAAA TAAGAAACTCT ATATAA AGAGTCTCTTA TTTTTATTTTTATTA TERM 4977 3585881 - 3585908 + T 86 -5.7 -5.74684 | opp_overlap 3585881 CTACAAAAATAAAAA TAAGAAACTCT ATATAA AGAGTCTCTTA TTTTTATTTTTATTA groL 3587546 - 3585921 - | chaperonin GroEL TERM 4978 3586205 - 3586217 + g 70 -4.1 -4.97957 | CTATTTGTCTTACTG GTTCT TCT AGAGC TTTTCTTATTATATC TERM 4979 3586802 - 3586814 + g 73 -3.5 -5.2166 | CTTCTATGTCTTCAC TTATT ATT AATAA TTTTTTACCTTGTTG groES 3587863 - 3587576 - | chaperonin, 10 kDa CLK_2717 3588179 - 3588823 + | hypothetical protein TERM 4980 3588833 - 3588808 - T 73 -5.6 -4.8667 | opp_overlap 3588786 3588808 TATATTGTATAAAAA TATGAGAAAA TTATAG TTTCCTCATA TTTTTGCCTATTTTT CLK_2716 3589030 - 3588818 - | putative integral membrane protein TERM 4981 3589249 - 3589293 + r 90 -11.9 -3.08996 | opp_overlap 3589249, overlap 3589251 3589253 TTTTTAAAAAATAAA TATAGCTATAAAAATAATTTA AAA TACTTTATTTTTATAGCTATA TATTAACTAAAACTA TERM 4982 3589293 - 3589249 - R 100 -11.9 -5.04249 | opp_overlap 3589249 3589251 3589253 TTTTTAAAAAATAAA TATAGCTATAAAAATAATTTA AAA TACTTTATTTTTATAGCTATA TATTAACTAAAACTA TERM 4983 3589251 - 3589291 + r 82 -10.1 -3.10344 | opp_overlap 3589249, overlap 3589249 3589253 TTTAAAAAATAAATA TAGCTATAAAAATAATTTA AAA TACTTTATTTTTATAGCTA TATATTAACTAAAAC TERM 4984 3589253 - 3589289 + r 71 -8.3 -3.11072 | opp_overlap 3589249, overlap 3589251 3589249 TAAAAAATAAATATA GCTATAAAAATAATTTA AAA TACTTTATTTTTATAGC TATATATTAACTAAA CLK_2718 3590829 - 3589336 - | [Fe] hydrogenase TERM 4985 3590603 - 3590643 + g 83 -10.5 -3.5032 | opp_overlap 3590612 3590626 3590627, overlap 3590601 CTCTCTAATTCATTT GTTAAGTTATCATCTGGCT TAA AGCCAGCTGCTAACTGAGC TCTTTCATATACCAC CLK_2719 3591919 - 3591002 - | putative 8-oxoguanine DNA glycosylase TERM 4986 3591988 - 3592019 + r 100 -16.2 -2.60808 | opp_overlap 3591988, overlap 3591991 AAACTTAAAAATAAA TAAGCTGTACTTTA AATA TAAAGTACAGCTTA TAGGTTATAACTAAT TERM 4987 3592019 - 3591988 - R 100 -16.2 -4.92828 | opp_overlap 3591988 3591991 AAACTTAAAAATAAA TAAGCTGTACTTTA AATA TAAAGTACAGCTTA TAGGTTATAACTAAT TERM 4988 3591991 - 3592016 + r 100 -13.5 -3.45321 | opp_overlap 3591988, overlap 3591988 CTTAAAAATAAATAA GCTGTACTTTA AATA TAAAGTACAGC TTATAGGTTATAACT gltA 3593455 - 3592070 - | glutamate synthase (NADPH), homotetrameric CLK_2721 3594345 - 3593455 - | oxidoreductase, NAD-binding CLK_2722 3595208 - 3594576 - | Rex family transcriptional regulator CLK_2723 3595408 - 3597330 + | putative drug resistance ABC transporter, ATP-binding protein TERM 4989 3597394 - 3597376 - T 70 -2.5 -5.56264 | CGCAAAGATAAAAAA TATACGT AATAA ACATATA GATAAGCTTTAGTAG CLK_2724 3598434 - 3597670 - | LytTr family DNA-binding response regulator TERM 4990 3597909 - 3597937 + g 77 -7.5 -4.21184 | TCTTTACATAAGTTT TATCCTCCATTGT ATA ACAATAGTGGATA TTCTTTGTATCTATT CLK_2725 3600069 - 3598435 - | sensor histidine kinase TERM 4991 3598492 - 3598507 + g 82 -4 -5.64274 | opp_overlap 3598503 TTCATTTAGTTTACT CTCTAT ATAC ATGGAG TTTTTTTCTCCATAG TERM 4992 3600130 - 3600102 - H 75 -7.8 -4.00782 | opp_overlap 3600098 3600105, overlap 3600105 3600128 TTACATTACTATAAA TAATTTATTAAA TATTC TTTAATAAATTA TACAATAAATAAATA TERM 4993 3600745 - 3600756 + G 70 -5.8 -4.21275 | opp_overlap 3600745 3600744, overlap 3600753 TTGTATTTATAATAG GACC TGCT GGTC TTTTAAATACCTTAA cstA 3600312 - 3601730 + | carbon starvation protein CstA TERM 4994 3601739 - 3601773 + T 100 -14.6 -5.64873 | opp_overlap 3601739 AGAATAATATAAAAA GAATGTCTCAAAATAA ATA TAATTTTGAGACATTC TTTTTTATTATTCAA TERM 4995 3601773 - 3601739 - T 100 -14.6 -5.21506 | opp_overlap 3601739 AGAATAATATAAAAA GAATGTCTCAAAATAA ATA TAATTTTGAGACATTC TTTTTTATTATTCAA CLK_2727 3604708 - 3601781 - | putative peptidase TERM 4996 3601951 - 3601965 + g 77 -5.8 -4.86001 | CTCTTTCCCTTTGCC TATCTT CAT AAGATA TTTTTCTCAAATAAT TERM 4997 3603094 - 3603106 + g 72 -4.1 -5.05301 | overlap 3603091 CTAAAATATTTTTTT CTTCT AAA GGAAG TTTTTCTGCTTGTTT TERM 4998 3605048 - 3605069 + r 100 -8.7 -6.5058 | opp_overlap 3605048 TTCCCATAGTAAAAA GCACCGCTT CCCC AAGCAGTGC TTTTTTTTTATTTAT TERM 4999 3605069 - 3605048 - R 100 -10.9 -4.8048 | opp_overlap 3605048 TTCCCATAGTAAAAA GCACCGCTT CCCC AAGCAGTGC TTTTTTTTTATTTAT pyc 3608523 - 3605089 - | pyruvate carboxylase TERM 5000 3608126 - 3608139 + g 71 -4.5 -4.84761 | TGAACTCCAGGTATA GTAGG TACC CCTGC TTTTTCTGCAACTAT TERM 5001 3608760 - 3608738 - R 73 -8 -3.74475 | opp_overlap 3608738 3608741 3608750 3608751, overlap 3608741 ATAAACCTAATATAA TAATATAATA ATT TATTATATTA TTCAATGATATAGTA CLK_2729 3610005 - 3608983 - | glycoprotease family metalloendopeptidase CLK_2730 3610229 - 3610852 + | endodeoxyribonuclease RusA family protein TERM 5002 3610940 - 3610966 + T 100 -11.1 -5.20783 | opp_overlap 3610940 TACACTACATAAAAA TACACTACATA AACTA TATGTAGTGTA TTTTTATCTTTAAGT TERM 5003 3610966 - 3610940 - T 100 -11.1 -5.02502 | opp_overlap 3610940 TACACTACATAAAAA TACACTACATA AACTA TATGTAGTGTA TTTTTATCTTTAAGT CLK_2731 3612270 - 3611014 - | pyridine nucleotide-disulfide oxidoreductase TERM 5004 3612478 - 3612504 + r 84 -9.5 -3.71848 | opp_overlap 3612479, overlap 3612479 TTATGCACGTGAAAA AGCCAGTAATC TTTAC GATTACTGGCC TTCTTAATGGCAGGG TERM 5005 3612503 - 3612479 - R 100 -13 -4.62783 | opp_overlap 3612478 3612479 TATGCACGTGAAAAA GCCAGTAATC TTTAC GATTACTGGC CTTCTTAATGGCAGG TERM 5006 3612479 - 3612503 + r 91 -13 -2.82895 | opp_overlap 3612479, overlap 3612478 TATGCACGTGAAAAA GCCAGTAATC TTTAC GATTACTGGC CTTCTTAATGGCAGG CLK_2733 3613025 - 3612639 - | hypothetical protein CLK_2734 3613978 - 3613088 - | hypothetical protein TERM 5007 3613944 - 3613968 + g 71 -2.1 -5.47218 | opp_overlap 3613946, overlap 3613946 AGCAATACAAATAAT AATACACTTAC TAT GTAGGAGTATA TTTTTTTCAATACAA CLK_2735 3614902 - 3613994 - | manganese/zinc/iron chelate ABC transporter substrate-binding protein TERM 5008 3615207 - 3615193 - g 71 -7.2 -3.79482 | opp_overlap 3615195 AATAGTATAATAGAA GATGTT ACT AACATC GATTACTCAAAGCAC CLK_2736 3615100 - 3616341 + | HDIG domain-containing protein CLK_2737 3616479 - 3616937 + | hypothetical protein CLK_2738 3616934 - 3617647 + | glycoprotease family protein rimI 3617640 - 3618098 + | ribosomal-protein-alanine acetyltransferase TERM 5009 3618196 - 3618148 - T 100 -12.7 -3.91196 | opp_overlap 3618155, overlap 3618155 TTTACATATATTAAA TATAGTAGGGTGCCTCAAAATAA ATT TAATTTTGAGACACCCTTTTATA AATTACTCTACAACT TERM 5010 3618189 - 3618155 - T 100 -15.2 -2.82681 | opp_overlap 3618155, overlap 3618148 ATATTAAATATAGTA GGGTGCCTCAAAATAA ATT TAATTTTGAGACACCC TTTTATAAATTACTC TERM 5011 3618155 - 3618189 + T 100 -13 -4.48221 | opp_overlap 3618155 3618148 ATATTAAATATAGTA GGGTGCCTCAAAATAA ATT TAATTTTGAGACACCC TTTTATAAATTACTC tyrS 3619422 - 3618199 - | tyrosyl-tRNA synthetase TERM 5012 3618539 - 3618555 + g 77 -8.1 -3.79164 | opp_overlap 3618539, overlap 3618535 TTAGTAACTTCAAAA GCTAAAA CCC TTTTAGC TTCATTTATTTCTGC TERM 5013 3618555 - 3618539 - G 81 -8.1 -4.20696 | opp_overlap 3618535 3618539 TTAGTAACTTCAAAA GCTAAAA CCC TTTTAGC TTCATTTATTTCTGC TERM 5014 3619335 - 3619325 - G 72 -4 -5.01546 | opp_overlap 3619325 AAACCTATATAAAAA GAAA TTT TTTC TTTACCTAGAAGTTC TERM 5015 3619589 - 3619553 - R 100 -12.6 -4.08767 | opp_overlap 3619550 3619553 3619558, overlap 3619558 TTTATTTTTGCAAAA TTAAAGCTATTGAAGA TTCCC TCATCAATAGCTTTAA TACTTATTATATATA TERM 5016 3619553 - 3619589 + r 93 -12.6 -3.02314 | opp_overlap 3619553 3619558, overlap 3619550 3619558 TTTATTTTTGCAAAA TTAAAGCTATTGAAGA TTCCC TCATCAATAGCTTTAA TACTTATTATATATA TERM 5017 3619584 - 3619558 - R 80 -8.1 -4.19735 | opp_overlap 3619553 3619550 3619558, overlap 3619553 TTTTGCAAAATTAAA GCTATTGAAGA TTCCC TCATCAATAGC TTTAATACTTATTAT TERM 5018 3619558 - 3619584 + r 78 -8.1 -3.89734 | opp_overlap 3619558 3619553, overlap 3619553 3619550 TTTTGCAAAATTAAA GCTATTGAAGA TTCCC TCATCAATAGC TTTAATACTTATTAT CLK_2741 3620062 - 3619655 - | hypothetical protein CLK_2742 3621355 - 3620198 - | putative ATP-binding protein TERM 5019 3620285 - 3620302 + g 81 -5.6 -5.22794 | TATAAAAATAACCTT GCCTTT TCCCCT AAAGGC TTTTTTCATCCTTCT TERM 5020 3621470 - 3621513 + r 100 -13.4 -4.43309 | opp_overlap 3621478 3621481, overlap 3621471 3621478 TATTTTGAAAACAAT TCGTAAAATAAGGAAGTTGC CAAC GCAACTCCCTTATTTTATGC TTTTCATTAGACTTG TERM 5021 3621471 - 3621512 + r 100 -16.9 -3.25262 | opp_overlap 3621478 3621481, overlap 3621470 3621478 ATTTTGAAAACAATT CGTAAAATAAGGAAGTTGC CAAC GCAACTCCCTTATTTTATG CTTTTCATTAGACTT TERM 5022 3621478 - 3621505 + r 100 -11.4 -4.68539 | opp_overlap 3621478 3621481, overlap 3621471 3621470 AAACAATTCGTAAAA TAAGGAAGTTGC CAAC GCAACTCCCTTA TTTTATGCTTTTCAT TERM 5023 3621505 - 3621478 - R 100 -13.6 -4.17523 | opp_overlap 3621478 3621471 3621470, overlap 3621481 AAACAATTCGTAAAA TAAGGAAGTTGC CAAC GCAACTCCCTTA TTTTATGCTTTTCAT TERM 5024 3621502 - 3621481 - R 100 -10.9 -4.19577 | opp_overlap 3621478 3621471 3621470, overlap 3621478 CAATTCGTAAAATAA GGAAGTTGC CAAC GCAACTCCC TTATTTTATGCTTTT CLK_2743 3622066 - 3621503 - | hypothetical protein TERM 5025 3622089 - 3622113 + r 85 -8.1 -4.72373 | opp_overlap 3622088 3622091, overlap 3622105 CCCCTCCTTAAAATT TACTTTATATA CAG TATATGAAGTA TTTATATTTTTTTAA CLK_2744 3622308 - 3622147 - | hypothetical protein TERM 5026 3622391 - 3622416 + H 93 -9.1 -4.81551 | opp_overlap 3622391 3622389 3622385 AAATAATTATATATA TTGCAGTTGTT CTTA ATCAACTGCAA TTTTTAATATGAATA TERM 5027 3622416 - 3622391 - H 74 -9.1 -3.08778 | opp_overlap 3622391, overlap 3622389 3622385 AAATAATTATATATA TTGCAGTTGTT CTTA ATCAACTGCAA TTTTTAATATGAATA TERM 5028 3622509 - 3622523 + H 86 -5.8 -5.63857 | opp_overlap 3622509 ATATTATATAATTTA TTAATG AAA CATTAA TTTTTTTAAATTTTT TERM 5029 3623266 - 3623281 + G 70 -4 -4.90013 | overlap 3623268 ATCCATGCATACATC TATAGC TTTT GCTATG TTTTTGGTTGCGTTA CLK_2745 3622571 - 3623563 + | PAP2 family protein TERM 5030 3623610 - 3623571 - T 100 -11 -4.31085 | opp_overlap 3623576 3623606, overlap 3623576 TATATTAATCTAAAA CAAAAGAAATGAGGCTTA AATT TAAGTCTCATTTCTTTTT ATTATTTAAAAATAT TERM 5031 3623605 - 3623576 - T 100 -10.9 -5.13343 | opp_overlap 3623576, overlap 3623571 TAATCTAAAACAAAA GAAATGAGGCTTA AATT TAAGTCTCATTTC TTTTTATTATTTAAA TERM 5032 3623576 - 3623605 + T 100 -13.1 -5.38549 | opp_overlap 3623576 3623571 TAATCTAAAACAAAA GAAATGAGGCTTA AATT TAAGTCTCATTTC TTTTTATTATTTAAA prfC 3625241 - 3623652 - | peptide chain release factor 3 CLK_2747 3625746 - 3626552 + | HAD family hydrolase TERM 5033 3626585 - 3626607 + T 90 -6.4 -5.69262 | opp_overlap 3626585 TATAAAAAATAAAAA GTTTTCATAA GTA TAATGAAAAC TTTTTATTTTTATAA TERM 5034 3626607 - 3626585 - T 90 -6.4 -5.8096 | opp_overlap 3626585 TATAAAAAATAAAAA GTTTTCATAA GTA TAATGAAAAC TTTTTATTTTTATAA TERM 5035 3626675 - 3626652 - T 85 -10.4 -3.02144 | opp_overlap 3626637 CTACCCGCTCTAATA CTCCCATCTT CTTC AAAATGGGAG TAAAGAGCGGCTACG TERM 5036 3626758 - 3626719 - T 81 -8.8 -3.90922 | gap 1, opp_overlap 3626726 3626755, overlap 3626722 3626723 ATTTCTCCTAAAGAA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAAAGGG TERM 5037 3626753 - 3626723 - T 82 -9.8 -3.04652 | opp_overlap 3626726, overlap 3626722 3626719 CTCCTAAAGAATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 5038 3626726 - 3626750 + T 90 -10.1 -3.71552 | opp_overlap 3626723 3626722 3626719 CTAAAGAATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 5039 3626794 - 3626763 - T 100 -16.8 -3.62522 | opp_overlap 3626755, overlap 3626771 GAATTCTGTTAATAA GCTTTAAAGGGAGT AAAA ACTCCCTCTAAAGC CAAGAACTCTGTTTA TERM 5040 3626786 - 3626771 - T 79 -9 -3.64049 | opp_overlap 3626755, overlap 3626763 TTAATAAGCTTTAAA GGGAGT AAAA ACTCCC TCTAAAGCCAAGAAC trpS 3627810 - 3626812 - | tryptophanyl-tRNA synthetase TERM 5041 3627229 - 3627245 + g 89 -9.5 -4.21812 | AGACATTTTTTTAGT TGGATCT TGA AGATCCA TTATTTTAGCTCCGG TERM 5042 3627877 - 3627856 - R 100 -9.5 -5.82281 | AAATATATAAAAAAA CCCTACAAC AAAA GTTATAGGG CGAATTATCGCGGTA CLK_2749 3628126 - 3627989 - | hypothetical protein CLK_2750 3628908 - 3628534 - | desulfoferrodoxin TERM 5043 3629118 - 3629103 - g 71 -3.3 -5.33866 | TAAATGGATAAAAAA CCTTA TCTTCC TAAGG AAAGAGACTTTTTAG CLK_2751 3629091 - 3629285 + | hypothetical protein TERM 5044 3629378 - 3629424 + T 95 -12.1 -3.83006 | gap 1, opp_overlap 3629378 3629383, overlap 3629383 3629403 AACAAATCTTATAAA TAAAACCCTATTTAGTTATAAT TTTT ATT-TAACTAAATAGGGTTTTC TTGTTAGTTAAATAT TERM 5045 3629424 - 3629378 - T 100 -12.1 -3.96893 | gap 1, opp_overlap 3629378 3629383 3629403, overlap 3629383 AACAAATCTTATAAA TAAAACCCTATTTAGTTATAAT TTTT ATT-TAACTAAATAGGGTTTTC TTGTTAGTTAAATAT TERM 5046 3629383 - 3629419 + T 100 -12 -4.95167 | gap 1, opp_overlap 3629378 3629383, overlap 3629378 3629403 ATCTTATAAATAAAA CCCTATTTAGTTATAAT TTTT ATT-TAACTAAATAGGG TTTTCTTGTTAGTTA TERM 5047 3629419 - 3629383 - T 100 -12 -4.99645 | gap 1, opp_overlap 3629383 3629378 3629403, overlap 3629378 ATCTTATAAATAAAA CCCTATTTAGTTATAAT TTTT ATT-TAACTAAATAGGG TTTTCTTGTTAGTTA cgs 3638146 - 3629498 - | cyclic beta 1-2 glucan synthetase TERM 5048 3634599 - 3634573 - G 77 -9.8 -3.01712 | opp_overlap 3634571 3634570, overlap 3634585 TTTGTTTGCTCAATA TTTTTATAAATA TGT TATTTATAAAAA CAATATCTGGCTCCA TERM 5049 3638313 - 3638347 + r 100 -7.5 -5.73978 | gap 1, opp_overlap 3638313 CATTAAATAAAAAAA TCTTATTGAGTT-AGT TCAA ATTCAACTCAATAAGA TTTTTTATTTATCAT TERM 5050 3638347 - 3638313 - R 100 -6.7 -5.99154 | opp_overlap 3638313 CATTAAATAAAAAAA TCTTATTGAGTTA GTTCAAATT CAACTCAATAAGA TTTTTTATTTATCAT lysA 3639679 - 3638411 - | diaminopimelate decarboxilase lysC 3640915 - 3639713 - | aspartokinase II TERM 5051 3639927 - 3639944 + g 74 -2.1 -5.64304 | gap 1 TCATCAATCTTTATT TTAT-CCT TTG AGGCATAA TTTTTTATTATCTTC TERM 5052 3641040 - 3641009 - R 100 -15.4 -5.98675 | opp_overlap 3641009 3641012 TATAAAAATAAAAAA TAATGCAACAAAGG AACA CCTTTGCTGCATTA TTTCAATAATACAAA TERM 5053 3641009 - 3641040 + r 100 -13.2 -3.68351 | opp_overlap 3641009, overlap 3641012 TATAAAAATAAAAAA TAATGCAACAAAGG AACA CCTTTGCTGCATTA TTTCAATAATACAAA TERM 5054 3641012 - 3641037 + r 95 -10.5 -3.97674 | opp_overlap 3641009, overlap 3641009 AAAAATAAAAAATAA TGCAACAAAGG AACA CCTTTGCTGCA TTATTTCAATAATAC CLK_2755 3642609 - 3641311 - | zinc metalloprotease, aminopeptidase I family TERM 5055 3642430 - 3642418 - G 82 -6.3 -5.24129 | CTCTCCTATAAAAAA TGCTA TTA TAGCA GAATGATTTTTAGTG TERM 5056 3642442 - 3642462 + g 77 -4.7 -5.22039 | overlap 3642438 3642443 AGCAGAATGATTTTT AGTGGTAAA ATA TTTGCCACC TTTTTTCAATTTCCA TERM 5057 3642443 - 3642461 + g 77 -8.2 -3.72139 | overlap 3642438 3642442 GCAGAATGATTTTTA GTGGTAAA ATA TTTGCCAC CTTTTTTCAATTTCC TERM 5058 3643643 - 3643626 - g 70 -5.7 -4.21408 | opp_overlap 3643626 AAGCTGAAAATGAAA TATCTAA AAAA TTAGATA TTCTTCTAGTTATTC CLK_2756 3642758 - 3643936 + | cation efflux family protein CLK_2757 3644073 - 3645164 + | hypothetical protein TERM 5059 3645330 - 3645276 - T 100 -19.8 -4.51812 | opp_overlap 3645276 TTTCACAAGAATAAA GAACTGCTAATTCCTAAGAGTTTA ATTTTTA TAAATCCTTAGGAATTAGCAGTTC TTTTTATTAATTTTA TERM 5060 3645276 - 3645330 + T 100 -19.8 -5.28166 | opp_overlap 3645276 TTTCACAAGAATAAA GAACTGCTAATTCCTAAGAGTTTA ATTTTTA TAAATCCTTAGGAATTAGCAGTTC TTTTTATTAATTTTA CLK_2758 3647558 - 3645429 - | putative helicase TERM 5061 3646340 - 3646358 + g 93 -6 -5.72622 | GTTTTTCTTCATATT GTCTTTGA ATT TCATAGAC TTTTTTGTTTCTCAC TERM 5062 3647590 - 3647607 + r 70 -6.3 -4.21322 | CGGTTTATTCTTCTA CAGGTGA TTTA TCACTTG TTTCCTTTGTATTCG ftsH 3649555 - 3647579 - | ATP-dependent metalloprotease FtsH TERM 5063 3649263 - 3649276 + g 81 -3.9 -5.54894 | CCACCATATTTCACC TTAGA ATCA TCTAA TTTTTTTACTAAATT TERM 5064 3649758 - 3649703 - R 100 -18.4 -3.8211 | opp_overlap 3649710 TGTTATTTAGAATAA TCTTAAATTTATTATTAAATATTTGT TAAG AAAAATATTTAATAATAAATTTAAGA CAAAATTATGAATAT TERM 5065 3649710 - 3649751 + r 91 -10.7 -3.53761 | opp_overlap 3649703 TAGAATAATCTTAAA TTTATTATTAAATATTTGT TAAG AAAAATATTTAATAATAAA TTTAAGACAAAATTA TERM 5066 3649946 - 3649913 - R 78 -6.3 -5.07523 | gap 1 TATAGATAAATAAAA GATATGAG-CAAATAT TAT ATATTTATCTCACATC TTCTTTATAAATAAC CLK_2760 3651504 - 3650113 - | putative dipeptidase TERM 5067 3650372 - 3650386 + g 75 -5.8 -4.71401 | opp_overlap 3650371 TCAAAATATAAAGGT TTTTGA TCC TCAAAA TTTTCTACTTTTATT TERM 5068 3651615 - 3651657 + r 75 -6.4 -4.5477 | opp_overlap 3651616 3651621, overlap 3651616 GTTAAAACCTACTAT ATAAAAGGTATAGGAAAATC ATT GATTCCCCTATACCCTTTAA TTTTCTAATATATTA TERM 5069 3651656 - 3651616 - R 100 -16.5 -2.8619 | opp_overlap 3651616 3651615, overlap 3651621 TTAAAACCTACTATA TAAAAGGTATAGGAAAATC ATT GATTCCCCTATACCCTTTA ATTTTCTAATATATT TERM 5070 3651616 - 3651656 + r 87 -9.9 -3.31777 | opp_overlap 3651616 3651621, overlap 3651615 TTAAAACCTACTATA TAAAAGGTATAGGAAAATC ATT GATTCCCCTATACCCTTTA ATTTTCTAATATATT TERM 5071 3651651 - 3651621 - R 100 -14.2 -4.57755 | opp_overlap 3651616 3651615, overlap 3651616 ACCTACTATATAAAA GGTATAGGAAAATC ATT GATTCCCCTATACC CTTTAATTTTCTAAT proS 3653142 - 3651706 - | prolyl-tRNA synthetase TERM 5072 3653212 - 3653186 - R 76 -2.3 -5.95539 | gap 1 TTGTAAATAAAAAAA CTCCTAATCCCT ATAC AGGGACC-GAAG TTATGTCGGCGGTAC TERM 5073 3653284 - 3653272 - R 70 -7.7 -3.35996 | opp_overlap 3653271 CACTTTTATTGATAA CGGAA TTT TTCCG CTGTATCCTACTTAA CLK_2762 3653808 - 3653566 - | GIY-YIG domain-containing protein CLK_2763 3655904 - 3654246 - | SulP family sulfate permease CLK_2764 3657503 - 3656118 - | sensor histidine kinase TERM 5074 3656537 - 3656547 + g 70 -5.4 -4.59774 | opp_overlap 3656537 TTATTTGACGTAGAA TCTC TTG GAGA TTTATATTTTCTTTA TERM 5075 3657303 - 3657316 + g 91 -5.3 -5.84432 | TACAAACTTATCTAC CTGTT CTCC AACAG TTTTTTTATATTCTC CLK_2765 3658179 - 3657487 - | DNA-binding response regulator CLK_2766 3659557 - 3658349 - | putative lipoprotein CLK_2767 3660467 - 3659562 - | bacitracin ABC transporter, ATP-binding protein TERM 5076 3660582 - 3660570 - H 70 -3.5 -5.28281 | ATAAAATAAAGAAAA TATAA AGA TTATA GAACAGCATTTAAAG CLK_2768 3660824 - 3661027 + | hypothetical protein TERM 5077 3661054 - 3661025 - T 90 -10.1 -3.6682 | opp_overlap 3661025 3661024, overlap 3661028 3661031 TTTTATCCATTCAAA TAGTAAGAGCTCC ATAA GGAGCTCCTAATA GCTTTTTTATTTTTC TERM 5078 3661051 - 3661028 - T 86 -11.8 -2.6462 | opp_overlap 3661025 3661024, overlap 3661025 3661031 TATCCATTCAAATAG TAAGAGCTCC ATAA GGAGCTCCTA ATAGCTTTTTTATTT TERM 5079 3661048 - 3661031 - T 93 -11.3 -3.47029 | opp_overlap 3661025 3661024, overlap 3661028 3661025 CCATTCAAATAGTAA GAGCTCC ATAA GGAGCTC CTAATAGCTTTTTTA CLK_2769 3662149 - 3661154 - | hypothetical protein TERM 5080 3662283 - 3662259 - R 88 -6.6 -5.45802 | opp_overlap 3662259, overlap 3662261 TTTTTAAAACAAAAA TCCTATGTTT TTATT AAACATAGAA TCTTTTAGTATTTGT TERM 5081 3662385 - 3662368 - R 78 -7.7 -4.24338 | opp_overlap 3662368 AAAAATACGTTAAAA GAGCCTC CTAA GAAGCTC TTAATTAAATAAACT CLK_2770 3663583 - 3662498 - | hypothetical protein TERM 5082 3663674 - 3663711 + r 77 -7.9 -4.0641 | opp_overlap 3663681, overlap 3663681 ATTTTTTATCTTTAT TATAAAACTCATCTCTA TATA TGGAGATGAGCTCTATA TTTATATAAATACAA TERM 5083 3663704 - 3663681 - R 82 -8.2 -4.4648 | opp_overlap 3663674 3663681 ATCTTTATTATAAAA CTCATCTCTA TATA TGGAGATGAG CTCTATATTTATATA TERM 5084 3663681 - 3663704 + r 81 -10.4 -2.5459 | opp_overlap 3663681, overlap 3663674 ATCTTTATTATAAAA CTCATCTCTA TATA TGGAGATGAG CTCTATATTTATATA CLK_2771 3664784 - 3663891 - | BadF/BadG/BcrA/BcrD ATPase family protein CLK_2772 3665140 - 3664844 - | PTS system lactose/cellobiose-specific family IIA subunit CLK_2773 3665690 - 3665382 - | PTS system lactose/cellobiose-specific family IIB subunit TERM 5085 3665817 - 3665796 - R 81 -5.3 -5.4505 | gap 1 GTTTGCAACAAAAAA GTGTGTATAT TTA AT-TACACAC TTACACTATTACTAA CLK_2774 3668539 - 3665810 - | sigma-54 dependent transcriptional regulator TERM 5086 3666462 - 3666481 + g 90 -7.2 -5.52079 | overlap 3666464 ATTATTAAGAATTTC TTCAAACC TTTA GGTTTGGA TTTTTCTTTTACTAT TERM 5087 3668363 - 3668379 + g 95 -6.6 -5.72118 | opp_overlap 3668363 TAATGAGCGATATAA TACAGG CCTTC CCTGTA TTTTTTCTATTTTTT TERM 5088 3668649 - 3668610 - R 100 -10.2 -4.4874 | opp_overlap 3668613 3668618, overlap 3668603 3668613 3668618 TGCAAAAATGGAAAA TATTTAAAGCCATATGCA TCAT TGCATACGGCTTTTATTA TAACCAAATGTTGTT TERM 5089 3668613 - 3668646 + r 82 -9.7 -3.30007 | opp_overlap 3668610 3668603 3668613 3668618, overlap 3668618 AAAAATGGAAAATAT TTAAAGCCATATGCA TCAT TGCATACGGCTTTTA TTATAACCAAATGTT TERM 5090 3668646 - 3668613 - R 88 -11.9 -2.88603 | opp_overlap 3668613 3668618, overlap 3668610 3668603 3668618 AAAAATGGAAAATAT TTAAAGCCATATGCA TCAT TGCATACGGCTTTTA TTATAACCAAATGTT TERM 5091 3668618 - 3668641 + r 95 -9.6 -4.77165 | opp_overlap 3668613 3668610 3668603 3668618, overlap 3668613 TGGAAAATATTTAAA GCCATATGCA TCAT TGCATACGGC TTTTATTATAACCAA TERM 5092 3668641 - 3668618 - R 100 -11.8 -3.85184 | opp_overlap 3668618 3668613, overlap 3668613 3668610 3668603 TGGAAAATATTTAAA GCCATATGCA TCAT TGCATACGGC TTTTATTATAACCAA CLK_2775 3669955 - 3668663 - | PTS system lactose/cellobiose family IIC subunit CLK_2776 3671373 - 3670036 - | glycosy hydrolase family protein TERM 5093 3671711 - 3671682 - R 100 -8 -5.4492 | opp_overlap 3671682 TATATACATAAAAAA CACAGTCACATT CTATAT AATGCAACTGTG CTTTGAATATCATAA CLK_2777 3673042 - 3671729 - | putative diguanylate cyclase TERM 5094 3673175 - 3673153 - H 71 -8.6 -3.02511 | CTTATTTTGTTAACA GCTATCTATA ATC TATAGATAAC TAATAAAAATAAAAT TERM 5095 3673450 - 3673419 - H 78 -9.8 -2.57463 | opp_overlap 3673408 3673422, overlap 3673422 AAGTTTTGGTATAAT TAATTATACAAAAT ATTT ATTTTGTACAATTA TGTGGAGGAAATTTA CLK_2778 3673468 - 3674067 + | phage integrase family site specific recombinase TERM 5096 3674159 - 3674200 + T 100 -11.9 -4.16371 | opp_overlap 3674164, overlap 3674164 TTCCCTTGAGGATAT AAAAAGCTTTGACATTTTG TTCT CAAAATCTCAAAGCTTTTC TTTAATTATTTAATA TERM 5097 3674164 - 3674195 + T 100 -11.8 -5.03713 | opp_overlap 3674164, overlap 3674159 TTGAGGATATAAAAA GCTTTGACATTTTG TTCT CAAAATCTCAAAGC TTTTCTTTAATTATT TERM 5098 3674195 - 3674164 - T 100 -11.8 -5.00895 | opp_overlap 3674164 3674159 TTGAGGATATAAAAA GCTTTGACATTTTG TTCT CAAAATCTCAAAGC TTTTCTTTAATTATT speD 3674729 - 3674379 - | S-adenosylmethionine decarboxylase CLK_2780 3676079 - 3674883 - | hypothetical protein TERM 5099 3676589 - 3676563 - R 70 -4.5 -4.9792 | gap 1 GAGCGCACACAAAAA GCAACATAAGGA AGTT TCCC-ATGTCGC TTTTCTTAAAATTAT CLK_2781 3676876 - 3676601 - | hypothetical protein TERM 5100 3677138 - 3677101 - R 85 -9.9 -3.1994 | opp_overlap 3677104, overlap 3677103 CAGAGCACTGATCAA TAGGGGCACTGAATAAC TGTC GTTTTTCAGTGCCCTTT CTATACTCTATATCT TERM 5101 3677136 - 3677103 - R 93 -12.5 -3.15996 | opp_overlap 3677104, overlap 3677101 GAGCACTGATCAATA GGGGCACTGAATAAC TGTC GTTTTTCAGTGCCCT TTCTATACTCTATAT TERM 5102 3677104 - 3677135 + r 100 -16 -4.12475 | opp_overlap 3677103 3677101 AGCACTGATCAATAG GGGCACTGAATAAC TGTC GTTTTTCAGTGCCC TTTCTATACTCTATA CLK_2782 3677744 - 3677604 - | hypothetical protein CLK_2783 3677817 - 3678353 + | putative flavoredoxin TERM 5103 3678532 - 3678500 - f 70 -4.2 -5.07523 | opp_overlap 3678501, overlap 3678501 TAGACATAAACAAAA CCTCCTGTCGTA TTTTAATCC TACGACAAGAGT TCTTTTCTTGCAATA TERM 5104 3678531 - 3678501 - f 72 -7.7 -3.62887 | opp_overlap 3678501, overlap 3678500 AGACATAAACAAAAC CTCCTGTCGTA TTTTAATCC TACGACAAGAG TTCTTTTCTTGCAAT TERM 5105 3679191 - 3679228 + F 82 -10.1 -3.0264 | opp_overlap 3679196, overlap 3679196 AATATTAATATCTAT AAAAATAGGAGATTACA TGTC TGTACTCTCCTATTTTA TCTTGAAAAGGCTTT TERM 5106 3679223 - 3679196 - f 100 -10 -4.91459 | opp_overlap 3679196 3679191 TAATATCTATAAAAA TAGGAGATTACA TGTC TGTACTCTCCTA TTTTATCTTGAAAAG TERM 5107 3679196 - 3679223 + F 100 -10 -4.66537 | opp_overlap 3679196, overlap 3679191 TAATATCTATAAAAA TAGGAGATTACA TGTC TGTACTCTCCTA TTTTATCTTGAAAAG CLK_2785 3679730 - 3679891 + | hypothetical protein CLK_2787 3681227 - 3680781 - | acetyltransferase CLK_2788 3681682 - 3681527 - | hypothetical protein CLK_2789 3682805 - 3682101 - | hypothetical protein TERM 5108 3682183 - 3682159 - G 72 -8.7 -3.0464 | AATTTACGCCCAATA TGCTGATAAAA CCA TTTTTTCAGCA ACGATAGTTCCTGAC CLK_2790 3683637 - 3682852 - | AraC family transcription regulator TERM 5109 3682900 - 3682913 + g 83 -2.4 -5.84381 | CATAATTCCCCTTGC TGAC ATTCCA GTCA TTTTTTTATTAGTAA CLK_2791 3683765 - 3683616 - | hypothetical protein CLK_2792 3684233 - 3683958 - | UbiE/COQ5 family methlytransferase TERM 5110 3684023 - 3684033 + g 84 -6.8 -5.2189 | opp_overlap 3684022 ACTCAACACAAGGAT GGCA GAA TGCC TTTTTTGCTACTTCA CLK_2793 3684757 - 3684353 - | cytidine/deoxycytidylate deaminase family protein CLK_2794 3685845 - 3684907 - | NAD-dependent epimerase/dehydratase TERM 5111 3685210 - 3685230 + g 71 -6.9 -3.88464 | CAAAGCAATACCTTG TGCAATGTT CTC AACATAGCA TTTACATGTTTTTAA CLK_2795 3686902 - 3686381 - | riboflavin biosynthesis protein RibD domain-containing protein TERM 5112 3686562 - 3686546 - G 75 -7.3 -4.15222 | ATTGGCCTTAACAAA GTGATCT ATC AGACCAC CGCCACCAAACAGAA TERM 5113 3686717 - 3686729 + g 83 -7.7 -4.59773 | CTCTTTAGCAAAGCC CTGCT CAT AGCAG TTTTTGCCCATAACA uvrA 3689391 - 3686899 - | excinuclease ABC, A subunit TERM 5114 3686940 - 3686950 + g 82 -5.4 -5.45802 | CTTTCAAATACTTTC CAGT TAA ACTG TTTTTGTTTTCAGCA TERM 5115 3687304 - 3687320 + g 80 -6.6 -4.76087 | opp_overlap 3687303 3687300 TACGTCGCAAAGAGT TTGCAG ACGCC CTGCAA TTTCTTTATTATCTG TERM 5116 3688743 - 3688758 + g 81 -10.4 -3.09289 | overlap 3688739 TAAATCCATAATGTG CTGCGC ATTT GCGCAG TGTGTTGGCATAATG CLK_2797 3689814 - 3689395 - | MarR family transcriptional regulator TERM 5117 3689910 - 3689876 - R 100 -8.9 -5.34309 | gap 1, opp_overlap 3689876 3689878 3689883, overlap 3689878 3689883 ATCACTAAAGAAAAA CATCAATGTAGTTTCA TTTT TGAAACTAC-TTGATA TTTCCTACTAATGGC TERM 5118 3689878 - 3689908 + r 83 -9.3 -3.48738 | gap 1, opp_overlap 3689876 3689878 3689883, overlap 3689876 3689883 CACTAAAGAAAAACA TCAATGTAGTTTCA TTTT TGAAACTAC-TTGA TATTTCCTACTAATG TERM 5119 3689908 - 3689878 - R 89 -9.3 -4.29436 | gap 1, opp_overlap 3689878 3689876 3689883, overlap 3689876 3689883 CACTAAAGAAAAACA TCAATGTAGTTTCA TTTT TGAAACTAC-TTGA TATTTCCTACTAATG TERM 5120 3689904 - 3689883 - R 82 -10.3 -2.78342 | opp_overlap 3689878 3689876 3689883, overlap 3689878 3689876 AAGAAAAACATCAAT GTAGTTTCA TTTT TGAAACTAC TTGATATTTCCTACT TERM 5121 3689883 - 3689904 + r 91 -10.3 -3.48671 | opp_overlap 3689883 3689878 3689876, overlap 3689878 3689876 AAGAAAAACATCAAT GTAGTTTCA TTTT TGAAACTAC TTGATATTTCCTACT CLK_2798 3691124 - 3690180 - | hypothetical protein TERM 5122 3691339 - 3691323 - R 77 -5.1 -5.2853 | CACCTAAAAATAAAA GTGGATT ATA ACTCCAC AGATATTTTCTTAAC CLK_2799 3691729 - 3691328 - | putative transcriptional regulator TERM 5123 3691892 - 3691862 - R 81 -5.7 -5.36441 | gap 1, opp_overlap 3691862 3691864, overlap 3691864 TTGTGACATAAAAAA CATCGTA-TATTCA GCTT TGAATAGTACGATA TTAATATTTAATCTT TERM 5124 3691890 - 3691864 - R 70 -6.1 -4.31943 | gap 1, opp_overlap 3691862 3691864, overlap 3691862 GTGACATAAAAAACA TCGTA-TATTCA GCTT TGAATAGTACGA TATTAATATTTAATC CLK_2800 3692356 - 3691949 - | acetyltransferase TERM 5125 3692580 - 3692529 - R 90 -11.2 -3.18105 | opp_overlap 3692530 3692539, overlap 3692530 3692539 TGAACCTATTAAAAT CCATAAAAAATCACTTGCTTTTTC TCAT AAAATAGCAAGTGATTTTCGATGA TATTTTTAATTTTTG TERM 5126 3692579 - 3692530 - R 86 -12.5 -2.50381 | opp_overlap 3692530 3692539, overlap 3692529 3692539 GAACCTATTAAAATC CATAAAAAATCACTTGCTTTTTC TCAT AAAATAGCAAGTGATTTTCGATG ATATTTTTAATTTTT TERM 5127 3692530 - 3692579 + r 78 -9.6 -3.09564 | opp_overlap 3692530 3692529 3692539, overlap 3692539 GAACCTATTAAAATC CATAAAAAATCACTTGCTTTTT CTCATA AAATAGCAAGTGATTTTCGATG ATATTTTTAATTTTT TERM 5128 3692539 - 3692570 + r 84 -8.9 -4.24326 | opp_overlap 3692539 3692530 3692529, overlap 3692530 AAAATCCATAAAAAA TCACTTGCTTTTT CTCATA AAATAGCAAGTGA TTTTCGATGATATTT TERM 5129 3692570 - 3692539 - R 100 -9.6 -5.35222 | opp_overlap 3692530 3692539, overlap 3692530 3692529 AAAATCCATAAAAAA TCACTTGCTTTTTC TCAT AAAATAGCAAGTGA TTTTCGATGATATTT rumA 3694167 - 3692782 - | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 5130 3693985 - 3694000 + g 72 -2.6 -5.41941 | gap 1, opp_overlap 3693985 ATTTAATTTTATAAT CTTT-CC AAA GGCAAAG TTTTTATTTACTTTA CLK_2802 3694753 - 3694400 - | hypothetical protein TERM 5131 3694908 - 3694896 - R 80 -3.5 -5.97575 | opp_overlap 3694887, overlap 3694883 AATTTATAAAAAAAA TTTTA TTA TAAAA ACAAAAAGAGCACCA TERM 5132 3694934 - 3694916 - R 82 -4.5 -5.69262 | overlap 3694918 TTATAAAAACAAAAA GAGCACC ATAAA GGTGCTA AAGAAGATCAGTTGC TERM 5133 3694932 - 3694918 - R 77 -7.1 -4.45545 | overlap 3694916 ATAAAAACAAAAAGA GCACC ATAAA GGTGC TAAAGAAGATCAGTT TERM 5134 3695032 - 3695057 + r 70 -4.9 -4.80077 | opp_overlap 3695032 3695045, overlap 3695040 3695050 TCAATAAAAATAGTA CATTTTTTTAA AATT TTATAAAAATG TTATTTTTATTTTAC TERM 5135 3695040 - 3695060 + r 70 -2.7 -5.46706 | opp_overlap 3695032 3695045, overlap 3695032 3695050 AATAGTACATTTTTT TAAAATTTT ATA AAAATGTTA TTTTTATTTTACAAT CLK_2803 3696091 - 3695081 - | aldo/keto reductase family oxidoreductase TERM 5136 3696213 - 3696158 - R 71 -5.8 -4.63218 | gap 1, opp_overlap 3696168, overlap 3696163 3696164 3696168 TTGGTGTCAAGAAAA TAAAATTTAAGAGTCCAAATAGGAAAT TTG ATTTTCTAAATGGACTCTTTA-TTTTA GTATATAATTTTTAT TERM 5137 3696209 - 3696163 - R 72 -3.8 -5.27476 | opp_overlap 3696168, overlap 3696158 3696164 3696168 GTCAAGAAAATAAAA TTTAAGAGTCCAAATAGGAAAT TTG ATTTTCTAAATGGACTCTTTAT TTTAGTATATAATTT TERM 5138 3696208 - 3696164 - R 70 -7.3 -3.74859 | opp_overlap 3696168, overlap 3696163 3696158 3696168 TCAAGAAAATAAAAT TTAAGAGTCCAAATAGGAAAT TTG ATTTTCTAAATGGACTCTTTA TTTTAGTATATAATT TERM 5139 3696204 - 3696168 - R 75 -8.1 -3.51324 | opp_overlap 3696168, overlap 3696164 3696163 3696158 GAAAATAAAATTTAA GAGTCCAAATAGGAAAT TTG ATTTTCTAAATGGACTC TTTATTTTAGTATAT TERM 5140 3696168 - 3696204 + r 100 -10.3 -4.76191 | opp_overlap 3696164 3696163 3696158 3696168 GAAAATAAAATTTAA GAGTCCAAATAGGAAAT TTG ATTTTCTAAATGGACTC TTTATTTTAGTATAT pykA 3697991 - 3696234 - | pyruvate kinase pfkA 3698984 - 3698025 - | 6-phosphofructokinase TERM 5141 3699078 - 3699088 + r 75 -4 -5.60864 | opp_overlap 3699078, overlap 3699072 TATTTTCAATTATAA CATA ACT TATG TTTTTTTAATATATG TERM 5142 3699163 - 3699188 + r 100 -10.7 -5.19819 | opp_overlap 3699163 AATTTATAAAAAAAA TATTAGAAGAA ACAC TTCTTCTAATA TTTTTCATTTTATTT TERM 5143 3699188 - 3699163 - R 100 -10.7 -5.97575 | opp_overlap 3699163 AATTTATAAAAAAAA TATTAGAAGAA ACAC TTCTTCTAATA TTTTTCATTTTATTT dnaE 3702784 - 3699227 - | DNA polymerase III, alpha subunit TERM 5144 3700339 - 3700329 - G 72 -4 -5.16206 | opp_overlap 3700329 AAATTAACATAAAAA GATA CTT TATC ATTATCCCCCTTTAC TERM 5145 3701181 - 3701161 - G 72 -8.3 -3.32844 | opp_overlap 3701160 3701156 GTTGTGATGCTATAA CTACTCCTG CGG CATGAGTAG ATGTATGTCTTGGAA TERM 5146 3701431 - 3701441 + g 72 -6.8 -4.03995 | opp_overlap 3701430 TTATTTGCGATACAT TGGC CTT GCCA TATTTTTCTACCACA TERM 5147 3702563 - 3702575 + g 82 -7.7 -4.43642 | TACATATATTTCACA GCCTA TTA TAGGC TTTATTCCTTGTTTT CLK_2807 3703894 - 3702947 - | hypothetical protein TERM 5148 3703647 - 3703661 + g 75 -5.8 -4.76311 | opp_overlap 3703630 3703647, overlap 3703630 3703655 ATAATATATATATTA TTCTTT TTT AAAGAA TTGTTTTTCTTTATC CLK_2808 3705238 - 3703901 - | hypothetical protein CLK_2809 3706119 - 3705235 - | hypothetical protein TERM 5149 3706200 - 3706224 + r 80 -8.6 -4.33203 | opp_overlap 3706198 3706197 3706200, overlap 3706198 TTTAACAATAAACTA GGGAAGTCAT TTGTT AAGACTTCCC TTATTTGTTATATTC TERM 5150 3706224 - 3706200 - R 72 -8.6 -3.19055 | opp_overlap 3706200 3706198, overlap 3706198 3706197 TTTAACAATAAACTA GGGAAGTCAT TTGTT AAGACTTCCC TTATTTGTTATATTC murB 3707159 - 3706239 - | UDP-N-acetylenolpyruvoylglucosamine reductase CLK_2811 3707959 - 3707228 - | phosphotransferase domain-containing protein uvrC 3709875 - 3708019 - | excinuclease ABC, C subunit TERM 5151 3708203 - 3708182 - G 70 -5.9 -4.22375 | opp_overlap 3708184 ATATCATCTAACAAA GAGTGAAAA CTAT TTTTCCCTC TTAAACTCCTATGAT CLK_2813 3710497 - 3709889 - | putative metal-dependent hydrolase, membrane-bound TERM 5152 3710678 - 3710642 - R 100 -11.2 -4.33739 | opp_overlap 3710647 3710651, overlap 3710643 3710651 TAAAAAATTCTAAAA TTAAATAAATCTTGTG AATTA CACAAGATTTATTTAG TGAAATTATATTTTA TERM 5153 3710677 - 3710643 - R 100 -14.7 -3.18617 | opp_overlap 3710647 3710651, overlap 3710642 3710651 AAAAAATTCTAAAAT TAAATAAATCTTGTG AATTA CACAAGATTTATTTA GTGAAATTATATTTT TERM 5154 3710647 - 3710673 + r 95 -11.1 -3.77206 | opp_overlap 3710643 3710642 3710651, overlap 3710651 AATTCTAAAATTAAA TAAATCTTGTG AATTA CACAAGATTTA TTTAGTGAAATTATA TERM 5155 3710669 - 3710651 - R 83 -7.5 -4.67692 | opp_overlap 3710647 3710651, overlap 3710643 3710642 CTAAAATTAAATAAA TCTTGTG AATTA CACAAGA TTTATTTAGTGAAAT TERM 5156 3710651 - 3710669 + r 81 -7.5 -4.49958 | opp_overlap 3710651 3710643 3710642, overlap 3710647 CTAAAATTAAATAAA TCTTGTG AATTA CACAAGA TTTATTTAGTGAAAT CLK_2814 3711580 - 3710684 - | HD domain-containing protein TERM 5157 3711184 - 3711198 + g 91 -5 -5.90231 | ATCCCATAGCTCCAG TAGCTG CTA TAGCTA TTTTTTTATATTTAT CLK_2815 3713035 - 3711608 - | penicillin-binding protein CLK_2816 3714245 - 3713040 - | cell cycle protein FtsW TERM 5158 3714057 - 3714077 + g 82 -6.9 -4.95547 | opp_overlap 3714055 3714057, overlap 3714072 AAAAATAAACATATA TTTGTCTCC ATC GGAGAAAAA TTTTCTTATTATAAA TERM 5159 3714106 - 3714094 - G 74 -6.3 -4.46212 | opp_overlap 3714080 3714094, overlap 3714080 TTTCTTATTATAAAA TAGGA ATA TCCTA TTAATAAACAAGTAA CLK_2817 3714717 - 3714280 - | FHA domain-containing protein TERM 5160 3714807 - 3714776 - R 75 -8.1 -3.65529 | ATATTTGTATTTAAA GGACTAGCACCTA TATGTT TATATGCTAGTCC CAAATAAATTATAAC uvrA 3717638 - 3714816 - | excinuclease ABC, A subunit TERM 5161 3716605 - 3716615 + g 70 -4 -4.9725 | ATAATCTTTACCACT TTAG GAT CTAA TTTTTCTATAGGAGT TERM 5162 3717463 - 3717447 - G 70 -5.1 -4.57073 | CATTTGTCCTAAAAA CTGTCTA GCA TAGGCAG ATAAAGATTCTACAT uvrB 3719645 - 3717657 - | excinuclease ABC, B subunit CLK_2820 3720942 - 3719647 - | hypothetical protein TERM 5163 3721001 - 3720967 - R 85 -10.2 -3.28712 | opp_overlap 3720961 3720970, overlap 3720970 3720999 TTCCCCTCTCCATAA CTATGGTTTAGTTAGA AAG TCTAACTAAACCATCT ATATAAAAATATAAA TERM 5164 3720970 - 3720998 + r 100 -16.3 -2.99649 | opp_overlap 3720967 3720970, overlap 3720961 CCCTCTCCATAACTA TGGTTTAGTTAGA AAG TCTAACTAAACCA TCTATATAAAAATAT TERM 5165 3720998 - 3720970 - R 100 -16.3 -2.82623 | opp_overlap 3720961 3720970, overlap 3720967 CCCTCTCCATAACTA TGGTTTAGTTAGA AAG TCTAACTAAACCA TCTATATAAAAATAT CLK_2821 3722236 - 3721031 - | carboxyl-terminal protease TERM 5166 3721250 - 3721260 + g 70 -4 -4.97158 | AGTTTGAACTACACC CTTT CCA AAAG TTTTCTTTCCTATAG TERM 5167 3722347 - 3722319 - R 74 -6.3 -4.58424 | opp_overlap 3722319 3722326, overlap 3722326 CATCATTACAGAAAA TAAAAAATTAATT TTA AATTAATTTTTTT ATTTATAAAACTAGC TERM 5168 3722326 - 3722340 + r 89 -4.4 -6.02919 | opp_overlap 3722319 3722326, overlap 3722319 ACAGAAAATAAAAAA TTAATT TTA AATTAA TTTTTTTATTTATAA TERM 5169 3722340 - 3722326 - R 86 -4.4 -5.8901 | opp_overlap 3722326 3722319, overlap 3722319 ACAGAAAATAAAAAA TTAATT TTA AATTAA TTTTTTTATTTATAA CLK_2822 3723336 - 3722446 - | putative cell division protein FtsX CLK_2823 3724012 - 3723326 - | putative cell division ATP-binding protein FtsE TERM 5170 3724122 - 3724162 + r 80 -8.6 -4.26344 | opp_overlap 3724122 3724130, overlap 3724130 TAAATTATTGTAAAA TATAAAAAGATGTTTGTA AATAA TACAAACATCTTCCTATA TTTTGCTAGCCCTCT TERM 5171 3724162 - 3724122 - R 100 -13 -4.18094 | opp_overlap 3724122 3724130, overlap 3724130 TAAATTATTGTAAAA TATAAAAAGATGTTTGTA AATAA TACAAACATCTTCCTATA TTTTGCTAGCCCTCT TERM 5172 3724154 - 3724130 - R 100 -10.2 -5.28983 | opp_overlap 3724122 3724130, overlap 3724122 TGTAAAATATAAAAA GATGTTTGTA AATAA TACAAACATC TTCCTATATTTTGCT TERM 5173 3724130 - 3724154 + r 87 -10.2 -3.46906 | opp_overlap 3724130 3724122, overlap 3724122 TGTAAAATATAAAAA GATGTTTGTA AATAA TACAAACATC TTCCTATATTTTGCT CLK_2824 3725070 - 3724168 - | hypothetical protein TERM 5174 3724973 - 3724962 - G 88 -4.4 -5.7946 | GTTGGAAGAAAAAAA CTAC TGAT GTAG CTACTAAGAAAACTC TERM 5175 3725098 - 3725080 - R 71 -8.2 -2.99871 | opp_overlap 3725080, overlap 3725077 TCCCACATGAAATTA CACCTTCT ATG AAAAGGTG TTATAGGCTAAATAT CLK_2825 3725372 - 3725163 - | hypothetical protein TERM 5176 3725568 - 3725548 - R 73 -5.3 -4.79752 | opp_overlap 3725548, overlap 3725553 TTTAAGAATACAAAA GGGAAGGTA AAG TACCAACCC TTTTTAGTAAAAAAT TERM 5177 3725548 - 3725568 + r 71 -5.3 -4.7254 | opp_overlap 3725548 3725553 TTTAAGAATACAAAA GGGAAGGTA AAG TACCAACCC TTTTTAGTAAAAAAT CLK_2826 3726527 - 3725586 - | putative transketolase, C-terminal subunit CLK_2827 3727351 - 3726527 - | putative transketolase, N-terminal subunit TERM 5178 3727450 - 3727416 - R 75 -7.5 -3.93691 | TAACATAAAAATTAA TTTTAATATATAGGT GCAAA AGCTATATATTAAAA CAGTCTTTTGGGCTA TERM 5179 3727519 - 3727533 + r 70 -4.4 -5.01535 | opp_overlap 3727519 TATATTCTTAATTAA TAAAAA ATA TTTTTA TTTTTATAATTATCC TERM 5180 3727609 - 3727587 - R 85 -6.3 -5.59357 | opp_overlap 3727587, overlap 3727592 ATGATATCAAAAAAA GATAAGGGC AAAAA ACCCTTACC CTATTTAATTCAAAG CLK_2828 3727967 - 3727614 - | PemK family protein CLK_2829 3728247 - 3727924 - | hypothetical protein alr 3729546 - 3728386 - | alanine racemase TERM 5181 3729169 - 3729179 + g 76 -2.6 -5.61881 | GTCTACTACTATATG TATT TTT AATA TTTTTCTTTTTAGCA CLK_2831 3730188 - 3729574 - | hypothetical protein CLK_2832 3731890 - 3730388 - | carbohydrate kinase family protein acpS 3732267 - 3731887 - | holo-(acyl-carrier-protein) synthase TERM 5182 3732364 - 3732323 - R 70 -3.3 -5.32944 | gap 1, opp_overlap 3732327 3732353 3732361, overlap 3732327 TTTATAAGTAAAAAA CA-AAGGATAAATAGTTAAA ATC TATTACTATTTATCCTTATA AATTATATATAATTA TERM 5183 3732359 - 3732327 - R 93 -7.9 -5.12785 | opp_overlap 3732327 3732353, overlap 3732323 TAAGTAAAAAACAAA GGATAAATAGTTAAA ATC TATTACTATTTATCC TTATAAATTATATAT TERM 5184 3732327 - 3732359 + r 70 -7.9 -3.46913 | opp_overlap 3732327 3732323, overlap 3732353 TAAGTAAAAAACAAA GGATAAATAGTTAAA ATC TATTACTATTTATCC TTATAAATTATATAT CLK_2834 3732744 - 3732382 - | hypothetical protein CLK_2835 3734465 - 3733140 - | Na+/H+ antiporter family protein TERM 5185 3734586 - 3734564 - R 79 -4.9 -5.60689 | opp_overlap 3734564 CTATATAATAAAAAA CTTCTTGCA GATAA CACAAGAAG TTGATTTCCTCTATA CLK_2836 3735626 - 3734769 - | YihY family protein TERM 5186 3735735 - 3735761 + r 100 -9.6 -5.10601 | opp_overlap 3735735 TAGATCATAAAAAAA TAAAGGACTAGA AAA TCTAATCCTTTA TTTTTATACTTTTAT TERM 5187 3735761 - 3735735 - R 100 -11.8 -5.69473 | opp_overlap 3735735 TAGATCATAAAAAAA TAAAGGACTAGA AAA TCTAATCCTTTA TTTTTATACTTTTAT CLK_2837 3736446 - 3735787 - | hypothetical protein TERM 5188 3736534 - 3736544 + r 70 -2.6 -5.60556 | GGTTATGTGTTATTT TTTA ATA TAAA TTTTTCTTTTCTATT rpsD 3737148 - 3736555 - | ribosomal protein S4 CLK_2839 3737574 - 3738746 + | sodium:dicarboxylate symporter family protein TERM 5189 3738804 - 3738761 - T 95 -12.8 -3.1541 | opp_overlap 3738766, overlap 3738766 ACTAAACAAATTATA TAAAATGGGTGTATAAAAAT TTTT ACTTCTATACACCCATTTTG TTAGAATAAGAGTAA TERM 5190 3738799 - 3738766 - T 100 -12.7 -4.65584 | opp_overlap 3738766, overlap 3738761 ACAAATTATATAAAA TGGGTGTATAAAAAT TTTT ACTTCTATACACCCA TTTTGTTAGAATAAG TERM 5191 3738766 - 3738799 + T 85 -8.3 -4.65916 | opp_overlap 3738766 3738761 ACAAATTATATAAAA TGGGTGTATAAAAAT TTTT ACTTCTATACACCCA TTTTGTTAGAATAAG CLK_2840 3739527 - 3738934 - | PAP2 family protein CLK_2841 3740260 - 3739610 - | DedA family membrane protein CLK_2842 3741947 - 3740553 - | sensory transduction histidine kinase CLK_2843 3742608 - 3741928 - | alkaline phosphatase synthesis transcriptional regulatory protein PhoP CLK_2844 3742957 - 3743439 + | hypothetical protein TERM 5192 3743477 - 3743518 + T 100 -15.7 -4.287 | opp_overlap 3743477 3743482 3743515, overlap 3743482 ACGAAATCAGGCAAA TAAAATTCTGTTGAAAATA ACCA TATTTTTAACAGAATTTTA TTTTAAACTTTATTT TERM 5193 3743518 - 3743477 - T 100 -13.5 -3.74626 | opp_overlap 3743477 3743482, overlap 3743482 3743515 ACGAAATCAGGCAAA TAAAATTCTGTTGAAAATA ACCA TATTTTTAACAGAATTTTA TTTTAAACTTTATTT TERM 5194 3743513 - 3743482 - T 100 -9 -4.9138 | opp_overlap 3743477 3743482, overlap 3743477 ATCAGGCAAATAAAA TTCTGTTGAAAATA ACCA TATTTTTAACAGAA TTTTATTTTAAACTT TERM 5195 3743482 - 3743513 + T 100 -11.2 -5.10163 | opp_overlap 3743482 3743477, overlap 3743477 ATCAGGCAAATAAAA TTCTGTTGAAAATA ACCA TATTTTTAACAGAA TTTTATTTTAAACTT CLK_2845 3744564 - 3743770 - | MerR family transcriptional regulator CLK_2846 3745412 - 3744573 - | putative creatinine amidohydrolase TERM 5196 3745526 - 3745499 - R 100 -11.4 -5.626 | opp_overlap 3745499 TATTTCATAAAAAAA GAAAACCAGGAG TAAT CTCCCGATTTTC TTGTAGGTTTATAAA CLK_2847 3746650 - 3745871 - | hypothetical protein CLK_2848 3747734 - 3746640 - | hypothetical protein TERM 5197 3746873 - 3746885 + g 70 -3.5 -5.01732 | CTTCAAATTTCCCCT TATTA ACA TAATA TTTTTTAAACGCATT CLK_2849 3749709 - 3748291 - | putative site-specific DNA-methyltransferase restriction-modification protein TERM 5198 3748714 - 3748728 + g 72 -5 -4.84921 | opp_overlap 3748709 3748714, overlap 3748709 TTCATTATAATAATA TGGGTA TAT TATCCA TTGTTTTTTATTATA CLK_2850 3750136 - 3749990 - | hypothetical protein CLK_2851 3750789 - 3750631 - | hypothetical protein CLK_2852 3751124 - 3750987 - | transposon Tn7 transposition protein TnsA TERM 5199 3751181 - 3751200 + r 86 -9.4 -3.95555 | opp_overlap 3751181 CCTAGTTATGGAACA TCCTGAAT TTTG ATTCAGGA TTTATACGTCCTTCT TERM 5200 3751200 - 3751181 - R 78 -9.4 -3.09878 | opp_overlap 3751181 CCTAGTTATGGAACA TCCTGAAT TTTG ATTCAGGA TTTATACGTCCTTCT TERM 5201 3751324 - 3751290 - R 100 -9.4 -5.24796 | opp_overlap 3751290, overlap 3751270 TTTATACAATAAAAA GCCGCACACTCTCA CAAATAT TGAGAATGTGCAAC TTTACTATATTGCTG glmS 3753210 - 3751384 - | glutamine-fructose-6-phosphate transaminase (isomerizing) TERM 5202 3752545 - 3752556 + g 71 -3 -5.27709 | overlap 3752552 TTCTTCTTTTTCATT GTAA ATTG TTAC TTTGTTTTTTTCTAA TERM 5203 3753251 - 3753217 - R 76 -4.5 -5.36441 | opp_overlap 3753223, overlap 3753219 3753246 TCCGCACATAAAAAA TCCTCCTTAGATTAT ATTTA ATAATTTAAGAAGAA AGTCCTCACTAAAGC TERM 5204 3753383 - 3753399 + r 72 -8.1 -3.16921 | AACTTAAGTGATACT CCAAATT TTC AATTTGG TTAGTAAAACTTACT TERM 5205 3753413 - 3753430 + r 76 -8.5 -3.81339 | opp_overlap 3753413 3753410 GGTTAGTAAAACTTA CTCAGAT GTTA ATCTGAG TTTCCCTTATAACTC TERM 5206 3753538 - 3753555 + r 79 -8.5 -4.15066 | opp_overlap 3753535 3753538 GACTAGTAGAACTTA CTCAGAT GTTA ATCTGAG TTTCCTTTATAACTC CLK_2854 3754552 - 3753875 - | putative transaldolase CLK_2855 3755218 - 3754571 - | haloacid dehalogenase, IA family protein srlD 3756027 - 3755242 - | sorbitol-6-phosphate 2-dehydrogenase TERM 5207 3755994 - 3756008 + g 90 -7.2 -5.64421 | AACTTTGAGCTCCTC CTGTTA TTA TAACAG TTTTTTCTTTAAAAT CLK_2857 3756412 - 3756047 - | PTS system, glucitol/sorbitol-specific, IIA component TERM 5208 3756518 - 3756564 + r 100 -12.8 -4.74132 | opp_overlap 3756523 3756528 3756531, overlap 3756523 GTATATTTAAATTAT TTAAATATAAGAATAAAAGAAT GTA ATCCTTTTATTCTTATATTTTA TTTTTAATCAAATCT TERM 5209 3756559 - 3756523 - R 100 -14.9 -3.74224 | opp_overlap 3756523 3756518, overlap 3756528 3756531 TTTAAATTATTTAAA TATAAGAATAAAAGAAT GTA ATCCTTTTATTCTTATA TTTTATTTTTAATCA TERM 5210 3756523 - 3756559 + r 100 -12.7 -5.3104 | opp_overlap 3756523 3756528 3756531, overlap 3756518 TTTAAATTATTTAAA TATAAGAATAAAAGAAT GTA ATCCTTTTATTCTTATA TTTTATTTTTAATCA TERM 5211 3756554 - 3756528 - R 95 -10.4 -3.84587 | opp_overlap 3756523 3756518, overlap 3756523 3756531 ATTATTTAAATATAA GAATAAAAGAAT GTA ATCCTTTTATTC TTATATTTTATTTTT CLK_2858 3757582 - 3756578 - | PTS system, glucitol/sorbitol-specific, IIBC component CLK_2859 3758140 - 3757595 - | PTS system, glucitol/sorbitol-specific, IIC component gutM 3758580 - 3758185 - | glucitol operon activator protein TERM 5212 3758302 - 3758338 + g 100 -14.8 -3.1355 | gap 1, opp_overlap 3758291 TATATTGGGATTTAT GC-TATGGAGATTTTGA TTAT TCAAAATCTCCATAGGC TTAAATCTAGCTAAA CLK_2861 3759643 - 3758594 - | putative L-iditol 2-dehydrogenase TERM 5213 3759668 - 3759680 + r 80 -3.5 -5.95286 | CTCCCTTCAAAGTTT TAAAT TAT ATTTA TTTTTTATTTTTAGT CLK_2862 3760649 - 3759678 - | putative glucitol operon regulator TERM 5214 3759821 - 3759832 + g 91 -4.4 -6.11019 | ATTCTGCTACAGCTA TGGA GTAT TCCA TTTTTTTTAATTTTT TERM 5215 3760760 - 3760782 + r 87 -7.2 -5.22104 | opp_overlap 3760780, overlap 3760780 TGAAATTTTGTTTTA TTGTTGTATT TAT AATATAACAA TTTTATTGTTTTTTC TERM 5216 3760985 - 3760928 - R 100 -22.8 -3.28447 | opp_overlap 3760933 3760976, overlap 3760933 TTATTTATTATAATA TAAAACATAAGGGCAATTTATAATTA ACCTAA TAATTATAAATTACCCTTATGTTTTA AAAATATAAATTAAT TERM 5217 3760980 - 3760933 - R 100 -18.3 -4.75289 | opp_overlap 3760933 3760976, overlap 3760928 TATTATAATATAAAA CATAAGGGCAATTTATAATTA ACCTAA TAATTATAAATTACCCTTATG TTTTAAAAATATAAA TERM 5218 3760933 - 3760980 + r 100 -16.1 -4.13014 | opp_overlap 3760933 3760928, overlap 3760976 TATTATAATATAAAA CATAAGGGCAATTTATAATTA ACCTAA TAATTATAAATTACCCTTATG TTTTAAAAATATAAA glmM 3762354 - 3761005 - | phosphoglucosamine mutase TERM 5219 3761500 - 3761518 + g 72 -2.5 -5.35815 | TCCAAGATTACTCAT TACAGTA ACTAC TATTGTA TTTTTCTTTAATCTA TERM 5220 3762475 - 3762449 - R 100 -13.1 -5.36364 | opp_overlap 3762448 3762447 TGAAAAATATAAAAA GCCAGTGAAGA TGTTT TCTCCACTGGC AATATTTAATTCATT CLK_2864 3763019 - 3762489 - | 2-oxoacid:acceptor oxidoreductase subunit gamma TERM 5221 3762522 - 3762542 + g 70 -4.1 -4.87291 | TCCAGCTTTAAGGGC TTCTTTG TTTAATT CAAAGAA TTTTTCCTTACCATG CLK_2865 3763770 - 3763021 - | putative 2-oxoacid:acceptor oxidoreductase, beta subunit CLK_2866 3764840 - 3763770 - | putative 2-oxoacid:acceptor oxidoreductase, alpha subunit CLK_2867 3765065 - 3764856 - | putative 2-oxoacid:acceptor oxidoreductase, delta subunit TERM 5222 3764969 - 3764989 + g 78 -6.3 -4.79949 | TATAACCTTTTACAT TTAGTTTTT CTG AAAAGCTAA TTATTTTTTTAGGGC CLK_2868 3765829 - 3765167 - | hypothetical protein buk 3767162 - 3766092 - | butyrate kinase ptb 3768102 - 3767191 - | phosphate butyryltransferase TERM 5223 3768060 - 3768070 + g 78 -6.8 -4.58303 | TAGTTCTTCTTTCTT GGCT CTT AGCC TTTTGTAGTATTTCA buk 3769189 - 3768095 - | butyrate kinase CLK_2872 3770888 - 3769290 - | oxidoreductase, FAD-binding CLK_2873 3772170 - 3770890 - | hypothetical protein TERM 5224 3771290 - 3771304 + gr 70 -7.2 -3.69992 | overlap 3771294 ACTAATATAACTCCT TTTGGT AAT ACCAAA TTACTTTCTATATTT TERM 5225 3771430 - 3771442 + gr 81 -4.9 -5.39905 | ATTTTGTAATGGTGT TATAG ATT CTATA TTTTTATTATTTGAT TERM 5226 3772041 - 3772055 + gr 82 -5 -5.36314 | CCTTATTTACTATGC TAACGG GAA CTGTTA TTTTTTGCTCTTTTA CLK_2874 3772988 - 3772140 - | hypothetical protein TERM 5227 3773268 - 3773291 + G 90 -8.4 -4.97312 | opp_overlap 3773271 ATTTTTTATTGGATG TAATTATAGT TTTA ACTATAATTA TTTTTAGTTCATTTT CLK_2875 3773243 - 3773776 + | cell wall hydrolase family protein TERM 5228 3773848 - 3773813 - T 70 -4.8 -4.90477 | opp_overlap 3773813 TATAAAAAATCAAAA GGATTTAGCGCAAAAT TCAA ATTGCATGCTAAATCC TATTTTATTTATTTT TERM 5229 3774126 - 3774100 - T 85 -11 -2.92144 | opp_overlap 3774101, overlap 3774097 CCTAAAGGATAACCA CTTCTTAGGAGT AGA ACTCCTAAGAAT TCTGTTAATAAGCTT TERM 5230 3774101 - 3774125 + T 100 -14.5 -3.71552 | opp_overlap 3774100 3774097 CTAAAGGATAACCAC TTCTTAGGAGT AGA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 5231 3774130 - 3774176 + T 77 -8.9 -3.38696 | gap 1, opp_overlap 3774138 ACTCCTAAGAATTCT GTTAATAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTAAG-AAC TCTGTTTATCTAAAT TERM 5232 3774169 - 3774138 - T 100 -16 -3.62522 | opp_overlap 3774130 GAATTCTGTTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGC TAAGAACTCTGTTTA CLK_2876 3775032 - 3774169 - | pyridine nucleotide-disulfide family oxidoreductase TERM 5233 3774416 - 3774426 + g 76 -2.6 -5.52909 | overlap 3774406 TCTATTTCTGAATCT TTAA GAA TTAA TTTTTTTACATGTTG TERM 5234 3775059 - 3775086 + r 88 -8.6 -4.88163 | opp_overlap 3775059 CTAAAAAATGTAAAA TTGAGAATAACA TTAA TGCTATTCTCAA TTTATTTTATATTAG TERM 5235 3775086 - 3775059 - R 100 -10.8 -4.5366 | opp_overlap 3775059 CTAAAAAATGTAAAA TTGAGAATAACA TTAA TGCTATTCTCAA TTTATTTTATATTAG trx 3775415 - 3775098 - | thioredoxin iadA 3776699 - 3775524 - | isoaspartyl dipeptidase CLK_2879 3778027 - 3776774 - | TPR repeat-containing protein TERM 5236 3778080 - 3778095 + r 73 -2.6 -5.76237 | AATTCTTTTACTTTA TCATTA GAAA TAGTGA TTTTTTCTTTATGTG CLK_2880 3778795 - 3778055 - | putative lipoprotein TERM 5237 3778553 - 3778571 + g 90 -7.6 -5.13354 | ATCTACTATCTCTTC TTTTTCTA CTT TAGAAAAA TTTGTTTTTTCTGAA TERM 5238 3778880 - 3778863 - R 73 -2.7 -5.75945 | ATTGTGTAAAAAAAA CTCCATG AAAA CATAAAG TTAACATGAAGCTTT ptsI 3780519 - 3778900 - | phosphoenolpyruvate-protein phosphotransferase CLK_2882 3780837 - 3782846 + | putative sensory box sigma-54 dependent transcriptional regulator TERM 5239 3782865 - 3782911 + T 95 -11.4 -3.76393 | opp_overlap 3782865 3782866 3782877, overlap 3782867 3782877 TTTATTATAAAAACA CCTAAATAAAAAGATTTAAAAT TAA ATTTTAAATCTTTTTATTTATC TTTAAATTCAACTAT TERM 5240 3782911 - 3782865 - T 100 -11.4 -4.08042 | opp_overlap 3782865 3782867 3782877, overlap 3782866 3782877 TTTATTATAAAAACA CCTAAATAAAAAGATTTAAAAT TAA ATTTTAAATCTTTTTATTTATC TTTAAATTCAACTAT TERM 5241 3782910 - 3782866 - T 100 -14.9 -3.04102 | opp_overlap 3782865 3782867 3782877, overlap 3782865 3782877 TTATTATAAAAACAC CTAAATAAAAAGATTTAAAAT TAA ATTTTAAATCTTTTTATTTAT CTTTAAATTCAACTA TERM 5242 3782867 - 3782909 + T 100 -18.4 -3.46336 | opp_overlap 3782866 3782865 3782877, overlap 3782865 3782877 TATTATAAAAACACC TAAATAAAAAGATTTAAAAT TAA ATTTTAAATCTTTTTATTTA TCTTTAAATTCAACT TERM 5243 3782877 - 3782899 + T 100 -9.4 -5.48623 | opp_overlap 3782866 3782865 3782877, overlap 3782867 3782865 ACACCTAAATAAAAA GATTTAAAAT TAA ATTTTAAATC TTTTTATTTATCTTT TERM 5244 3782899 - 3782877 - T 100 -9.4 -5.31519 | opp_overlap 3782877 3782867 3782865, overlap 3782866 3782865 ACACCTAAATAAAAA GATTTAAAAT TAA ATTTTAAATC TTTTTATTTATCTTT CLK_2883 3783690 - 3782983 - | TPR repeat-containing protein CLK_2884 3784323 - 3783760 - | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit CLK_2885 3785257 - 3784415 - | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit TERM 5245 3785359 - 3785394 + r 100 -15.2 -4.96106 | opp_overlap 3785359 3785363, overlap 3785349 CGGTCTTTATAAAAA TAAATTCATATATTTC CAAG GAAATATATGAATTTA TTTTTACTCTTTATC TERM 5246 3785394 - 3785359 - R 100 -15.2 -4.82901 | opp_overlap 3785349 3785359, overlap 3785363 CGGTCTTTATAAAAA TAAATTCATATATTTC CAAG GAAATATATGAATTTA TTTTTACTCTTTATC TERM 5247 3785390 - 3785363 - R 100 -11.6 -4.96501 | opp_overlap 3785359, overlap 3785359 CTTTATAAAAATAAA TTCATATATTTC CAAG GAAATATATGAA TTTATTTTTACTCTT CLK_2886 3786102 - 3785398 - | N-acetylmuramoyl-L-alanine amidase TERM 5248 3785867 - 3785878 + g 74 -3 -5.37171 | ACAACCTTATAACCT TCTT TTTT AAGA TTTTTCTTTAATATT TERM 5249 3786292 - 3786270 - R 91 -7.1 -5.61596 | opp_overlap 3786270 ATTTTCATAAAAAAA CTCTACTTA TTAAT TAAGCAGAG TTTTTCACAATATAA CLK_2887 3787978 - 3786362 - | Na/Pi-cotransporter family protein/PhoU family protein TERM 5250 3788270 - 3788248 - R 100 -9.2 -5.5604 | opp_overlap 3788248 TTAAGCAATAAAAAA GGAAAGACAA AAA TAGTCTTTCC TTTTGATTCCATATT TERM 5251 3788248 - 3788270 + r 93 -9.2 -4.45151 | opp_overlap 3788248 TTAAGCAATAAAAAA GGAAAGACAA AAA TAGTCTTTCC TTTTGATTCCATATT rpsI 3788676 - 3788284 - | ribosomal protein S9 rplM 3789136 - 3788702 - | ribosomal protein L13 truA 3790000 - 3789260 - | tRNA pseudouridine synthase A CLK_2891 3790803 - 3790000 - | cobalt ABC transporter permease CLK_2892 3791666 - 3790800 - | putative cobalt ABC transporter, ATP-binding protein CLK_2893 3792499 - 3791651 - | putative cobalt ABC transporter, ATP-binding protein TERM 5252 3792584 - 3792552 - R 93 -9.4 -4.38171 | gap 1 TATATTATAGCAAAA TGGGGACTAAGT-TA ACTT TATACTTAATCCCCA AAGAATTATACTAAT rplQ 3792931 - 3792590 - | ribosomal protein L17 rpoA 3793922 - 3792975 - | DNA-directed RNA polymerase, alpha subunit rpsD 3794610 - 3793990 - | ribosomal protein S4 rpsK 3795043 - 3794645 - | ribosomal protein S11 TERM 5253 3794835 - 3794862 + g 81 -6.4 -5.07486 | gap 1, overlap 3794821 3794832 3794839 TTAGCTGCTGTTTCT GCA-GCCATTTGT GCT GCAAATGGTGTGC TTTTTCTTGAACCTC TERM 5254 3794839 - 3794857 + g 72 -8.2 -3.25358 | overlap 3794821 3794832 3794835 CTGCTGTTTCTGCAG CCATTTGT GCT GCAAATGG TGTGCTTTTTCTTGA rpsM 3795432 - 3795061 - | ribosomal protein S13 TERM 5255 3795250 - 3795276 + g 75 -7.4 -4.05004 | AACTTTTACATTCTT GTTAACGTAATC TCT GATTGCATTAAC TTCTTCTTCTGATAA rpmJ 3795658 - 3795545 - | ribosomal protein L36 infA 3795893 - 3795675 - | translation initiation factor IF-1 CLK_2901 3796182 - 3795901 - | hypothetical protein map 3796946 - 3796197 - | methionine aminopeptidase, type I adk 3797596 - 3796946 - | adenylate kinase TERM 5256 3797153 - 3797171 + g 72 -8.2 -3.23183 | ACATATATCACATTT TCCTTCTA TTT TAGGAGGA TTAAATCTTATGTGA secY 3798897 - 3797620 - | preprotein translocase, SecY subunit rplO 3799338 - 3798898 - | ribosomal protein L15 TERM 5257 3798968 - 3798978 + g 86 -2.6 -6.08563 | GAGAATTTTGCTGCT TTAA CAG TTAA TTTTTTTTCTATATT rpmD 3799537 - 3799358 - | ribosomal protein L30 TERM 5258 3799413 - 3799427 + g 73 -8.6 -3.09648 | ATCATTCCACTTATT TGAGGA GTT TCCTCA TGTTCAACTATGTTA rpsE 3800048 - 3799551 - | ribosomal protein S5 TERM 5259 3799811 - 3799825 + g 84 -8.6 -4.2803 | overlap 3799807 TTATATCATGTGGTA CAGTAG TTC CTACTG TTTTAACTTCAACTA TERM 5260 3800088 - 3800104 + r 71 -6.6 -4.15577 | TCAAGACCTGCTTCT CTTGCA CCTTC TGCAAG TTCTTTAATTCTTCC rplR 3800425 - 3800066 - | ribosomal protein L18 rplF 3800986 - 3800444 - | ribosomal protein L6 rpsH 3801408 - 3801010 - | ribosomal protein S8 rpsN 3801623 - 3801438 - | ribosomal protein S14 rplE 3802182 - 3801640 - | ribosomal protein L5 rplX 3802522 - 3802205 - | ribosomal protein L24 rplN 3802914 - 3802546 - | ribosomal protein L14 rpsQ 3803203 - 3802949 - | ribosomal protein S17 rpmC 3803437 - 3803225 - | ribosomal protein L29 rplP 3803870 - 3803427 - | ribosomal protein L16 rpsC 3804559 - 3803888 - | ribosomal protein S3 rplV 3804912 - 3804577 - | ribosomal protein L22 rpsS 3805218 - 3804934 - | ribosomal protein S19 TERM 5261 3805254 - 3805290 + r 77 -7.6 -4.07107 | gap 1, opp_overlap 3805256 3805258, overlap 3805256 3805258 CAATCATATGATTAC AAGATT-GAAGAGAATA TTAA TATTCTCTTCAAATCTA TTTATCATGTCTTCT TERM 5262 3805256 - 3805288 + r 89 -10.2 -3.61777 | gap 1, opp_overlap 3805256 3805258, overlap 3805254 3805258 ATCATATGATTACAA GATT-GAAGAGAATA TTAA TATTCTCTTCAAATC TATTTATCATGTCTT TERM 5263 3805288 - 3805256 - R 87 -10.2 -3.46117 | gap 1, opp_overlap 3805256 3805254 3805258, overlap 3805258 ATCATATGATTACAA GATT-GAAGAGAATA TTAA TATTCTCTTCAAATC TATTTATCATGTCTT TERM 5264 3805285 - 3805258 - R 95 -13 -3.29987 | opp_overlap 3805258 3805256 3805254, overlap 3805256 CATATGATTACAAGA TTGAAGAGAATA TTAA TATTCTCTTCAA ATCTATTTATCATGT TERM 5265 3805258 - 3805285 + r 90 -13 -2.61656 | opp_overlap 3805256 3805258, overlap 3805256 3805254 CATATGATTACAAGA TTGAAGAGAATA TTAA TATTCTCTTCAA ATCTATTTATCATGT rplB 3806121 - 3805288 - | ribosomal protein L2 rplW 3806469 - 3806176 - | ribosomal protein L23 rplD 3807089 - 3806469 - | ribosomal protein L4 rplC 3807743 - 3807114 - | ribosomal protein L3 rpsJ 3808141 - 3807833 - | ribosomal protein S10 TERM 5266 3808364 - 3808379 + r 84 -4.8 -5.79595 | TTACATTACAACTTC TATAGT ATAC ACTATA TTTTTTATTTTGACA TERM 5267 3808463 - 3808494 + r 86 -11.8 -2.67485 | opp_overlap 3808450 3808464 3808469, overlap 3808469 3808492 AATTTATTTTTATAA ATAAAAGGAAAGAG CGTC CTCTTTCCTTTTAG ATATTATATATTTAT TERM 5268 3808493 - 3808464 - R 100 -15.3 -3.87994 | opp_overlap 3808463 3808469 3808492, overlap 3808450 3808469 ATTTATTTTTATAAA TAAAAGGAAAGAG CGTC CTCTTTCCTTTTA GATATTATATATTTA TERM 5269 3808469 - 3808488 + r 95 -10.8 -4.31043 | opp_overlap 3808464 3808469, overlap 3808463 TTTTTATAAATAAAA GGAAAGAG CGTC CTCTTTCC TTTTAGATATTATAT TERM 5270 3808488 - 3808469 - R 100 -10.8 -4.99043 | opp_overlap 3808469 3808463, overlap 3808464 TTTTTATAAATAAAA GGAAAGAG CGTC CTCTTTCC TTTTAGATATTATAT tuf 3809731 - 3808538 - | translation elongation factor Tu fusA 3811840 - 3809771 - | translation elongation factor G TERM 5271 3811875 - 3811911 + r 100 -18.3 -3.35912 | opp_overlap 3811882, overlap 3811877 3811882 TTCAAATTCAAATTT GACAAAACTGTTTTGGC ACA GCCAAAACAGTTTTGTA TTAGTATCTGTAATG TERM 5272 3811877 - 3811909 + r 100 -20.9 -3.24235 | opp_overlap 3811882, overlap 3811875 3811882 CAAATTCAAATTTGA CAAAACTGTTTTGGC ACA GCCAAAACAGTTTTG TATTAGTATCTGTAA TERM 5273 3811904 - 3811882 - R 100 -15 -4.44974 | opp_overlap 3811882 3811877 3811875 TCAAATTTGACAAAA CTGTTTTGGC ACA GCCAAAACAG TTTTGTATTAGTATC TERM 5274 3811882 - 3811904 + r 100 -15 -4.7219 | opp_overlap 3811882, overlap 3811877 3811875 TCAAATTTGACAAAA CTGTTTTGGC ACA GCCAAAACAG TTTTGTATTAGTATC rpsG 3812382 - 3811912 - | ribosomal protein S7 TERM 5275 3812152 - 3812174 + g 86 -10 -3.85505 | TCCACCTATTCTTCT TGCTTTTACT TCA AGTAAAGGCA TTATGTTGTTCATGG rpsL 3812920 - 3812543 - | ribosomal protein S12 CLK_2930 3813238 - 3812996 - | ribosomal protein L7Ae family protein TERM 5276 3813292 - 3813267 - R 95 -11.3 -3.73936 | opp_overlap 3813267 3813271, overlap 3813272 AAATTCCATTAATAA GGAAACAAAGT AATA ACTTTGCTTCC TATATTAAAACATAT TERM 5277 3813267 - 3813292 + r 74 -9.1 -3.07522 | opp_overlap 3813267 3813272, overlap 3813271 AAATTCCATTAATAA GGAAACAAAGT AATA ACTTTGCTTCC TATATTAAAACATAT rpoC 3816896 - 3813360 - | DNA-directed RNA polymerase, beta' subunit TERM 5278 3814906 - 3814918 + g 71 -2 -5.4111 | ATAAACCCTCTACGA TACA TTTTT TGTA TTTTTTCTACTTGTT TERM 5279 3816021 - 3816034 + g 72 -5.3 -4.76088 | TATTAAAGCATCTAC TGCTT CTTG AAGCA TTCTTTTTTCATTTC rpoB 3820636 - 3816917 - | DNA-directed RNA polymerase, beta subunit TERM 5280 3817889 - 3817907 + g 72 -5.3 -4.74285 | TAATTTATTAACTCC TGGTGGT AACTC ATCACCA TTTTCTCTTGTAAAT TERM 5281 3820873 - 3820894 + r 82 -10.2 -3.00022 | opp_overlap 3820873 AAGTATACTAAAAAA GGGGTACT TACTTT AGTACCCC TCTATGTAGAGTAAA TERM 5282 3820894 - 3820873 - R 100 -10.2 -5.2422 | opp_overlap 3820873 AAGTATACTAAAAAA GGGGTACT TACTTT AGTACCCC TCTATGTAGAGTAAA rplL 3821279 - 3820911 - | ribosomal protein L7/L12 rplJ 3821826 - 3821326 - | ribosomal protein L10 TERM 5283 3821896 - 3821872 - R 100 -15.1 -4.52415 | opp_overlap 3821869, overlap 3821895 ATTTATAATAATAAA GGTCTCTCCGT AAG ACAGAGAGACC CAATATACTTTATAT rplA 3822717 - 3822028 - | ribosomal protein L1 TERM 5284 3822691 - 3822705 + g 90 -7.2 -5.48303 | TTTATCAACTAATTT TACACT TTC AGTGTA TTTTTTTCCCATTCT rplK 3823199 - 3822774 - | ribosomal protein L11 TERM 5285 3823049 - 3823063 + g 70 -5.7 -4.20354 | opp_overlap 3823034 3823048, overlap 3823034 CAGGAATTATTAATC CTGCT TGGTT AGCAG TTTTAGCATTAAATT nusG 3823794 - 3823270 - | transcription termination/antitermination factor NusG TERM 5286 3823440 - 3823452 + g 78 -3.3 -5.62288 | CTCCAACCTCAACAT CTACC TCT GGTTG TTTTTCTTTTATTCC TERM 5287 3823653 - 3823668 + g 72 -7.6 -3.58905 | CTTTAACTTCAACCT GTTCCT CCAT AGGAAC TTGTATATCAAAAAT secE 3824068 - 3823841 - | preprotein translocase, SecE subunit rpmG 3824267 - 3824118 - | ribosomal protein L33 TERM 5288 3824300 - 3824310 + r 73 -5.4 -4.8855 | opp_overlap 3824291, overlap 3824291 ACATAACCTATATGT GTAG GTT CTAC TTCTTTTTATTTTTT TERM 5289 3824455 - 3824432 - R 86 -9.6 -4.1585 | opp_overlap 3824426, overlap 3824423 TCATAACCCTTAAAA GGACTAGGTC TAGA AACCCAGTCC CTATAATTTAAAATT tuf 3825662 - 3824469 - | translation elongation factor Tu TERM 5290 3825872 - 3825888 + r 80 -9.5 -3.22475 | opp_overlap 3825875, overlap 3825870 TCGAACCCGCGGCAA CTAGCTT GGG AAGCTAG TGTTCTACCACTGAA sigH 3826619 - 3825978 - | RNA polymerase sigma-H factor CLK_2944 3827202 - 3826693 - | hypothetical protein TERM 5291 3826993 - 3827006 + g 76 -2.5 -5.53079 | TGTAAACACCACTAT TAAAT TATC ATTTA TTTTTTCTGTATTTT CLK_2945 3827978 - 3827205 - | RNA methyltransferase TERM 5292 3827285 - 3827299 + g 73 -8.6 -3.08798 | TAAGAGATGTTATAT TCCCAA GCA TTGGGA TCTTAACTAAAACAT TERM 5293 3827535 - 3827553 + g 79 -7.4 -4.46675 | opp_overlap 3827534 3827536, overlap 3827536 AGATGTTTTATAAAC AGTAGGAG TAA CTCCTACA TTTCTTCTCTTAGGT TERM 5294 3827536 - 3827552 + g 87 -10.9 -3.26921 | opp_overlap 3827534 3827536, overlap 3827535 GATGTTTTATAAACA GTAGGAG TAA CTCCTAC ATTTCTTCTCTTAGG TERM 5295 3827552 - 3827536 - G 87 -10.9 -3.5241 | opp_overlap 3827536 3827535, overlap 3827534 GATGTTTTATAAACA GTAGGAG TAA CTCCTAC ATTTCTTCTCTTAGG thyX 3828733 - 3827981 - | thymidylate synthase, flavin-dependent TERM 5296 3828059 - 3828071 + g 71 -7.7 -3.5393 | overlap 3828054 GGACATTTTTCCTTC TGGAC AAG GTCCA TTTACGCAACCTGGT CLK_2947 3829163 - 3828723 - | RNase3 domain-containing protein cysS 3830609 - 3829212 - | cysteinyl-tRNA synthetase ilvA 3831855 - 3830638 - | threonine dehydratase TERM 5297 3831285 - 3831299 + g 74 -8.6 -3.27923 | CTGGCTTTATGGATT TAGCTG CTA CAGCTA TTCCTGATATTAGCC CLK_2950 3833564 - 3831927 - | putative prolyl-tRNA synthetase TERM 5298 3832217 - 3832201 - G 73 -9.5 -2.62616 | opp_overlap 3832201 TCATCCTTTACATTA GCTATAG TTA CTATAGC TTTAAATGCTGATGT TERM 5299 3832201 - 3832217 + g 81 -9.5 -3.6959 | opp_overlap 3832201 TCATCCTTTACATTA GCTATAG TTA CTATAGC TTTAAATGCTGATGT TERM 5300 3832355 - 3832371 + g 95 -8.1 -5.52096 | opp_overlap 3832355 TTCCCTTATTATCAA TGAATGT AGC ACATTCA TTTTTTATTAAGTTT TERM 5301 3832371 - 3832355 - G 70 -8.1 -3.21099 | opp_overlap 3832355 TTCCCTTATTATCAA TGAATGT AGC ACATTCA TTTTTTATTAAGTTT TERM 5302 3833362 - 3833374 + g 86 -3.4 -5.87688 | TAAGGTATTGATATT TTGG AACCA CCAA TTTTTTTTGAATTAT TERM 5303 3833671 - 3833641 - R 84 -9.1 -4.26393 | opp_overlap 3833641 3833646, overlap 3833646 CATACAATATATAAA CAAAACTCGCCCC TTATT AGGACGAGTTTTA TTGCTAAGTTAGCTT TERM 5304 3833666 - 3833646 - R 80 -6.8 -5.08878 | opp_overlap 3833641 3833646, overlap 3833641 AATATATAAACAAAA CTCGCCCC TTATT AGGACGAG TTTTATTGCTAAGTT TERM 5305 3833674 - 3833684 + r 71 -5.4 -4.59207 | AGGACGAGTTTTATT GCTA AGT TAGC TTTTCTAATATTTGT ispD 3834364 - 3833675 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLK_2952 3835463 - 3834366 - | PIN/TRAM domain-containing protein TERM 5306 3835477 - 3835504 + H 100 -11.6 -4.28589 | opp_overlap 3835503, overlap 3835503 ATCCATTTCACCTCC TCTTAATAATTG TTAA CAATTATTAAGA TTTTCAATCCTTTTT CLK_2953 3835868 - 3836266 + | hypothetical protein TERM 5307 3836257 - 3836314 + T 100 -19.7 -4.30793 | opp_overlap 3836264 3836268 ATTAGGCAAATATAG TATGAGATAAAGTATAGCACAAAGTAT TAAA ATACTTTGTGCTATACTTTATCTAGCA TTATTTGTTCTCTAA TERM 5308 3836307 - 3836264 - T 100 -23 -2.86722 | opp_overlap 3836257, overlap 3836268 AAATATAGTATGAGA TAAAGTATAGCACAAAGTAT TAAA ATACTTTGTGCTATACTTTA TCTAGCATTATTTGT TERM 5309 3836303 - 3836268 - T 100 -19.4 -4.10566 | opp_overlap 3836257, overlap 3836264 ATAGTATGAGATAAA GTATAGCACAAAGTAT TAAA ATACTTTGTGCTATAC TTTATCTAGCATTAT CLK_2954 3837359 - 3836298 - | putative DNA-binding protein radA 3838736 - 3837378 - | DNA repair protein radA TERM 5310 3837809 - 3837836 + g 71 -8.6 -2.83112 | overlap 3837813 3837815 CTTTCGTTTCACTTA CCAATGCTTGTA TTTC TATAAGTATTGG TCTAGTCCCTTCCAT TERM 5311 3838809 - 3838836 + r 95 -11.6 -3.67864 | opp_overlap 3838809, overlap 3838816 ATAATTTTAAAAAAA CCAATAATTAAA TAAA TTTAATTATTGG TTTAAAATTAAATTC TERM 5312 3838836 - 3838809 - R 100 -11.6 -5.48303 | opp_overlap 3838809 3838816 ATAATTTTAAAAAAA CCAATAATTAAA TAAA TTTAATTATTGG TTTAAAATTAAATTC clpC 3841292 - 3838857 - | negative regulator of genetic competence MecB/ClpC CLK_2957 3842337 - 3841294 - | ATP:guanido phosphotransferase domain-containing protein TERM 5313 3841550 - 3841525 - G 76 -9.1 -3.1634 | opp_overlap 3841520 CTCTAAATTATCTAA TAGTATTGCTG ATTT CAGCAATGCTA AGGATCTATATATTT CLK_2958 3842869 - 3842342 - | UVR domain-containing protein TERM 5314 3842482 - 3842499 + g 70 -4.1 -4.85129 | overlap 3842483 3842494 3842496 GTTTTATTATATATT GTCCTGA TTTT TCAGGAA TTTTTCCTGTATGCT TERM 5315 3842483 - 3842498 + g 71 -7.6 -3.49993 | overlap 3842482 3842494 3842496 TTTTATTATATATTG TCCTGA TTTT TCAGGA ATTTTTCCTGTATGC TERM 5316 3842494 - 3842508 + g 71 -8.6 -2.88236 | overlap 3842483 3842482 3842496 ATTGTCCTGATTTTT CAGGAA TTT TTCCTG TATGCTCTACATTTC ctsR 3843356 - 3842892 - | transciptional repressor CtsR CLK_2960 3843982 - 3843752 - | hypothetical protein TERM 5317 3844337 - 3844283 - R 100 -29.4 -4.17513 | opp_overlap 3844283 3844288, overlap 3844288 AATAAAAACACTAAA TAAAATATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATATTTTA TTTTTACTAGATAAT TERM 5318 3844283 - 3844337 + r 100 -29.4 -4.75372 | opp_overlap 3844283 3844288, overlap 3844288 AATAAAAACACTAAA TAAAATATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATATTTTA TTTTTACTAGATAAT TERM 5319 3844288 - 3844332 + r 100 -24.9 -5.3104 | opp_overlap 3844283 3844288, overlap 3844283 AAACACTAAATAAAA TATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATA TTTTATTTTTACTAG TERM 5320 3844332 - 3844288 - R 100 -24.9 -5.00923 | opp_overlap 3844288 3844283, overlap 3844283 AAACACTAAATAAAA TATAGTATAAAAATCACCTAG AAA CTAGGTGATTTTTATACTATA TTTTATTTTTACTAG fusA 3846400 - 3844328 - | translation elongation factor G TERM 5321 3846550 - 3846509 - R 100 -8.5 -5.82316 | gap 1, opp_overlap 3846515, overlap 3846510 3846515 ACTATGCAAAAAAAA TGAAAAGCTATTAAATATAT ATT ACATATCTAATAGCTTTT-A TTACAACTTTTTATA TERM 5322 3846550 - 3846510 - R 93 -10.1 -4.07763 | opp_overlap 3846515, overlap 3846509 3846515 CTATGCAAAAAAAAT GAAAAGCTATTAAATATAT ATT ACATATCTAATAGCTTTTA TTACAACTTTTTATA TERM 5323 3846545 - 3846515 - R 100 -10 -4.99665 | opp_overlap 3846515, overlap 3846509 3846510 CAAAAAAAATGAAAA GCTATTAAATATAT ATT ACATATCTAATAGC TTTTATTACAACTTT TERM 5324 3846515 - 3846545 + r 71 -5.6 -4.6635 | opp_overlap 3846515 3846509 3846510 CAAAAAAAATGAAAA GCTATTAAATATAT ATT ACATATCTAATAGC TTTTATTACAACTTT TERM 5325 3849351 - 3849362 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TTCC GGGG TTCTTTTCACCTTTC TERM 5326 3849425 - 3849440 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 5327 3849591 - 3849608 + r 76 -8.5 -3.695 | opp_overlap 3849590 GATCTATCCACAACC CCAGAAA CAAG TTTCTGG TTTGGGCTCTTTCCC TERM 5328 3849750 - 3849735 - R 75 -9 -3.23572 | opp_overlap 3849732 3849735, overlap 3849713 3849733 ATTCAGTGCATAATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5329 3849735 - 3849750 + r 72 -9 -2.69489 | opp_overlap 3849713 3849735 3849733, overlap 3849732 ATTCAGTGCATAATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5330 3850129 - 3850148 + r 75 -9.2 -2.65808 | opp_overlap 3850120 3850117, overlap 3850126 3850126 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 5331 3851829 - 3851813 - R 83 -3.6 -5.84381 | opp_overlap 3851813 TTAGTAATAAAAAAA CAGTCC TTAAT GGCCTG TTTAAATGGTGGAGA TERM 5332 3851869 - 3851885 + r 72 -8.7 -2.62616 | overlap 3851840 TCGAACTCCTGACCC CCTGCTT GCA AGGCAGG TGCTCTCCCAACTGA TERM 5333 3854580 - 3854591 + r 75 -7.2 -4.2354 | AGGTTCTATTTCACT CCCC TTCC GGGG TTCTTTTCACCTTTC TERM 5334 3854654 - 3854669 + r 81 -10.4 -2.71011 | GTAGTATTTAGCCTT GGGAGG TGGT CCTCCC TGCTTCCCACAAGGT TERM 5335 3854820 - 3854837 + r 76 -8.5 -3.695 | opp_overlap 3854819 GATCTATCCACAACC CCAGAAA CAAG TTTCTGG TTTGGGCTCTTTCCC TERM 5336 3854964 - 3854979 + r 72 -9 -2.69489 | opp_overlap 3854942 3854964 3854966, overlap 3854961 ATTCAGTGCATGATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5337 3854979 - 3854964 - R 73 -9 -2.79915 | opp_overlap 3854964 3854961, overlap 3854942 3854966 ATTCAGTGCATGATA CATGGG GTTA CCCATG TGAGTTTCCTCATTC TERM 5338 3855224 - 3855245 + r 79 -8.9 -3.66908 | TGGTACAATCACTTA GTTAAACAT ACTA ATGTTTAAC TTCATTTTGAGAGAA TERM 5339 3855343 - 3855362 + r 75 -9.2 -2.65808 | opp_overlap 3855334 3855331, overlap 3855340 3855340 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 5340 3856983 - 3856998 + r 80 -6.2 -5.1361 | CTTACCAAATCTGTT GTTCTT TGTC AAGAAC TTTTTTCAAATTTGT TERM 5341 3857273 - 3857230 - R 85 -8.4 -4.65969 | opp_overlap 3857232 3857235 3857264, overlap 3857232 AATAAAGAATTAAAA GAGAATCCTATCAGTATTAA TATT TTAAAACCAATAGGATTCTT CTATATCTAATATTA TERM 5342 3857271 - 3857232 - R 100 -11 -3.90987 | opp_overlap 3857232 3857235 3857264, overlap 3857230 TAAAGAATTAAAAGA GAATCCTATCAGTATTAA TATT TTAAAACCAATAGGATTC TTCTATATCTAATAT murD 3858780 - 3857404 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 5343 3859081 - 3859092 + r 73 -4.4 -5.20633 | ATAAATTTTTTATCC TTCC TATT GGAA TTTTTATCTCTTTTT TERM 5344 3859402 - 3859424 + r 100 -9.2 -5.81622 | CCCTATTTCATTCTA TCAGGTGATT CGG ATTCACCTGA TTTTTTTGCTTTTAT TERM 5345 3859519 - 3859555 + r 100 -15.5 -5.00138 | opp_overlap 3859520, overlap 3859520 TATAATTAAATTAAA ACTATGAATTATAGAGT AAT ACTCTATAATTCATAGC TTTTTAATTTAAATA TERM 5346 3859520 - 3859554 + r 100 -19 -3.58998 | opp_overlap 3859520, overlap 3859519 ATAATTAAATTAAAA CTATGAATTATAGAGT AAT ACTCTATAATTCATAG CTTTTTAATTTAAAT TERM 5347 3859554 - 3859520 - R 100 -19 -4.62957 | opp_overlap 3859520 3859519 ATAATTAAATTAAAA CTATGAATTATAGAGT AAT ACTCTATAATTCATAG CTTTTTAATTTAAAT glyS 3861006 - 3859615 - | glycyl-tRNA synthetase TERM 5348 3860052 - 3860070 + g 76 -9 -3.44206 | TTTCTTTAGTTGTTG GATCTAAA TAG TTTAGATC TTCTCCTGAATGTTC TERM 5349 3861110 - 3861055 - R 79 -4.8 -5.47159 | TTTTAATATAAAAAA GGCTATAGCAACAAAGGGACGA CTTAATCGCGGT TCCACCCTTTTTGGCTATAGCC CTACTTTCTAATTAA lysS 3862840 - 3861326 - | lysyl-tRNA synthetase greA 3863341 - 3862859 - | transcription elongation factor GreA CLK_2985 3864299 - 3863472 - | hypothetical protein TERM 5350 3863688 - 3863708 + g 73 -5.5 -4.64846 | opp_overlap 3863690, overlap 3863690 AACTCTATTATTATT AATATACCA TAC TGGTATATC TTTTATAATTTCTAC TERM 5351 3863690 - 3863706 + g 79 -8.1 -3.92414 | opp_overlap 3863690, overlap 3863688 CTCTATTATTATTAA TATACCA TAC TGGTATA TCTTTTATAATTTCT TERM 5352 3863706 - 3863690 - G 72 -8.1 -3.23216 | opp_overlap 3863690 3863688 CTCTATTATTATTAA TATACCA TAC TGGTATA TCTTTTATAATTTCT CLK_2986 3865320 - 3864349 - | dihydrouridine synthase CLK_2987 3866106 - 3865330 - | Baf family transcriptional regulator TERM 5353 3865452 - 3865430 - G 89 -9.2 -4.31379 | ATTAATTTAGCAAAA CCTCCTGTAG CAA CTACAAAAGG CTCCTCTTCCCCTAG TERM 5354 3866174 - 3866155 - R 73 -7.1 -4.11501 | opp_overlap 3866155 TTAAATACAATGAAA GAGCAGC CTTGCC GCTGCCC TTTATGCTTGATTTA fhs 3867934 - 3866261 - | formate--tetrahydrofolate ligase TERM 5355 3868129 - 3868106 - R 93 -7.5 -5.1615 | opp_overlap 3868101 3868106 TTAATATGTAAAAAA GAGCAGATG ATAAAA CATCTACTC TTTTATTCTAACTAT TERM 5356 3868106 - 3868129 + r 73 -5.3 -4.79955 | opp_overlap 3868106, overlap 3868101 TTAATATGTAAAAAA GAGCAGATG ATAAAA CATCTACTC TTTTATTCTAACTAT ftsH 3869942 - 3868137 - | ATP-dependent metalloprotease FtsH TERM 5357 3869497 - 3869507 + g 74 -6.8 -4.19735 | TTCTTATCCGGTGTG GCCA TTT TGGC TTTACTTTTCCCAAA hpt 3870569 - 3870024 - | hypoxanthine phosphoribosyltransferase tilS 3871959 - 3870553 - | tRNA(Ile)-lysidine synthetase TERM 5358 3871791 - 3871815 + g 70 -4.4 -4.95167 | CTCCTCTAACACCAT GATTTATATG AGCCA CATATATATC TTTTATTCTTAATTG spoIIE 3874495 - 3872108 - | stage II sporulation protein E TERM 5359 3874789 - 3874816 + r 100 -14.4 -5.00895 | opp_overlap 3874789 TATATTATAAAAAAA GAGAGATTCTAT TTAA ATAGAATCTCTC TTTTTATGTGGTAGC TERM 5360 3874816 - 3874789 - R 100 -14.4 -5.69473 | opp_overlap 3874789 TATATTATAAAAAAA GAGAGATTCTAT TTAA ATAGAATCTCTC TTTTTATGTGGTAGC TERM 5361 3875634 - 3875602 - R 73 -7.1 -4.10925 | opp_overlap 3875607 3875612, overlap 3875612 ATACATTTCTTAAAA TAAATAAAAAGGCCC CTA AGGCCTTTTATTTTA ATAGCTTTTCTTACT TERM 5362 3875607 - 3875629 + r 70 -6.3 -4.34771 | opp_overlap 3875602 3875612, overlap 3875612 TTTCTTAAAATAAAT AAAAAGGCC CCTAA GGCCTTTTA TTTTAATAGCTTTTC TERM 5363 3875612 - 3875624 + r 80 -6.2 -5.13722 | opp_overlap 3875612 3875602, overlap 3875607 TAAAATAAATAAAAA GGCC CCTAA GGCC TTTTATTTTAATAGC TERM 5364 3875624 - 3875612 - R 88 -6.9 -5.59962 | opp_overlap 3875607 3875612, overlap 3875602 TAAAATAAATAAAAA GGCCC CTA AGGCC TTTTATTTTAATAGC CLK_2998 3876036 - 3875632 - | putative general stress protein CLK_2999 3876367 - 3876098 - | putative cell division protein FtsL CLK_3000 3876860 - 3876462 - | hypothetical protein TERM 5365 3876572 - 3876543 - G 93 -8.2 -5.07567 | opp_overlap 3876536 TGATATTCTAAAAAA TTTATTTATGTT TTGGAC AACATAAATAAA TATAGGATTTAAATA yabP 3877165 - 3876875 - | sporulation protein YabP TERM 5366 3877274 - 3877227 - R 100 -10.4 -4.49981 | opp_overlap 3877227 3877232 3877270, overlap 3877232 3877269 TATATTACTATAAAA TAAAAGGTTCTAAAAAAT AGTATTTTAAAA ATTTTTTAGAACCTTTTA TTTTAAAAATTATAT TERM 5367 3877227 - 3877274 + r 95 -10.4 -4.16251 | opp_overlap 3877227 3877232 3877269, overlap 3877232 3877270 TATATTACTATAAAA TAAAAGGTTCTAAAAAAT AGTATTTTAAAA ATTTTTTAGAACCTTTTA TTTTAAAAATTATAT TERM 5368 3877269 - 3877232 - R 80 -5.9 -5.20781 | opp_overlap 3877232 3877227, overlap 3877227 TACTATAAAATAAAA GGTTCTAAAAAAT AGTATTTTAAAA ATTTTTTAGAACC TTTTATTTTAAAAAT TERM 5369 3877232 - 3877269 + r 78 -5.9 -5.08255 | opp_overlap 3877227 3877232, overlap 3877227 TACTATAAAATAAAA GGTTCTAAAAAAT AGTATTTTAAAA ATTTTTTAGAACC TTTTATTTTAAAAAT CLK_3002 3877523 - 3877284 - | S4 domain-containing protein TERM 5370 3877579 - 3877562 - R 83 -4.1 -5.85425 | TAAATAAACAAAAAA CCCAGAT TAAA ACCTAGG TTTTTTATATTTATT hup 3877875 - 3877597 - | DNA-binding protein HU TERM 5371 3877914 - 3877895 - R 77 -8 -4.08767 | opp_overlap 3877888 3877885 3877894 3877895 GTTACCTCCTTAAAA TTAAGTAG TTTC CTACTTAA AGTTTTATACATTAT CLK_3004 3879448 - 3878003 - | MazG family protein spoVB 3880998 - 3879463 - | stage V sporulation protein B TERM 5372 3881110 - 3881093 - R 100 -11.3 -4.71828 | opp_overlap 3881093 AGTTTATTAATAAAA CCTGTGC TTAA GCACAGG TTCATATTAAGTATA TERM 5373 3881093 - 3881110 + r 93 -11.3 -3.38786 | opp_overlap 3881093 AGTTTATTAATAAAA CCTGTGC TTAA GCACAGG TTCATATTAAGTATA CLK_3006 3881682 - 3881131 - | stage V sporulation protein T TERM 5374 3881838 - 3881880 + r 82 -9.5 -3.4745 | opp_overlap 3881848, overlap 3881839 3881848 TTTAAAATTTTCTTC CAAATAAAAATCATGTGTA ATTTA TACACATGATTTTTATTCA TTATAATAGATTTTT TERM 5375 3881839 - 3881879 + r 90 -13 -2.67386 | opp_overlap 3881848, overlap 3881838 3881848 TTAAAATTTTCTTCC AAATAAAAATCATGTGTA ATTTA TACACATGATTTTTATTC ATTATAATAGATTTT TERM 5376 3881870 - 3881848 - R 100 -9.3 -5.27335 | opp_overlap 3881839 3881838 3881848 TCTTCCAAATAAAAA TCATGTGTA ATTTA TACACATGA TTTTTATTCATTATA TERM 5377 3881848 - 3881870 + r 100 -9.3 -5.2204 | opp_overlap 3881848, overlap 3881839 3881838 TCTTCCAAATAAAAA TCATGTGTA ATTTA TACACATGA TTTTTATTCATTATA CLK_3007 3882888 - 3881881 - | foldase protein mfd 3886478 - 3882972 - | transcription-repair coupling factor pth 3887075 - 3886506 - | peptidyl-tRNA hydrolase TERM 5378 3887170 - 3887132 - R 100 -10.6 -4.3767 | opp_overlap 3887132 3887136, overlap 3887136 TTATACTATAATAAA TAAATAATAAAGAGACTT ATT AGGTCCCTTTACTATTTA TTATATATTATATTT TERM 5379 3887132 - 3887170 + r 76 -8.4 -3.77486 | opp_overlap 3887132 3887136, overlap 3887136 TTATACTATAATAAA TAAATAATAAAGAGACTT ATT AGGTCCCTTTACTATTTA TTATATATTATATTT TERM 5380 3887166 - 3887136 - R 81 -7 -4.7458 | opp_overlap 3887132 3887136, overlap 3887132 ACTATAATAAATAAA TAATAAAGAGACTT ATT AGGTCCCTTTACTA TTTATTATATATTAT CLK_3010 3888357 - 3887185 - | putative protease CLK_3011 3889801 - 3888392 - | sensor histidine kinase CLK_3012 3890488 - 3889802 - | DNA-binding response regulator TERM 5381 3890090 - 3890102 + g 74 -6.3 -4.48987 | opp_overlap 3890089 TAGCTGCTCAAAATT TAAGG CCT CCTTA TTTTCATTATCCACA TERM 5382 3890607 - 3890659 + r 93 -11.9 -3.20226 | gap 1, opp_overlap 3890615 3890619, overlap 3890615 3890619 TTACAAATAGTTAAC TATATAAATAAAGTACCCATAGAA TTTATT TTCTATGAGTACTTTATTT-TATA TGTATTGATTAATCT TERM 5383 3890615 - 3890652 + r 100 -11.6 -4.68124 | opp_overlap 3890615 3890619, overlap 3890607 3890619 AGTTAACTATATAAA TAAAGTACCCATAGAA TTTATT TTCTATGAGTACTTTA TTTTATATGTATTGA TERM 5384 3890652 - 3890615 - R 100 -13.8 -4.13872 | opp_overlap 3890615 3890607 3890619, overlap 3890619 AGTTAACTATATAAA TAAAGTACCCATAGAA TTTATT TTCTATGAGTACTTTA TTTTATATGTATTGA TERM 5385 3890619 - 3890648 + r 86 -8 -4.85653 | opp_overlap 3890615 3890619, overlap 3890615 3890607 AACTATATAAATAAA GTACCCATAGAA TTTATT TTCTATGAGTAC TTTATTTTATATGTA TERM 5386 3890648 - 3890619 - R 100 -10.2 -4.64952 | opp_overlap 3890619 3890615 3890607, overlap 3890615 AACTATATAAATAAA GTACCCATAGAA TTTATT TTCTATGAGTAC TTTATTTTATATGTA prsA 3891627 - 3890668 - | ribose-phosphate pyrophosphokinase glmU 3893021 - 3891648 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 5387 3892718 - 3892708 - G 71 -6.8 -3.91084 | TCATTGGTAATTAAA GGAG CAT CTCC TGTAAATATAGCTAC TERM 5388 3893155 - 3893170 + r 93 -9 -4.80396 | opp_overlap 3893155, overlap 3893145 TTCAAAAATAAAAAA GGAGCT TATA AGCTCC TTTTTAGATATTTTA TERM 5389 3893170 - 3893155 - R 100 -9 -5.93252 | opp_overlap 3893155 3893145 TTCAAAAATAAAAAA GGAGCT TATA AGCTCC TTTTTAGATATTTTA spoVG 3893470 - 3893183 - | stage V sporulation protein G TERM 5390 3893305 - 3893316 + g 77 -5.8 -4.91109 | CTATATCCTTATATT CACC ATCT GGTG TTTTTCTGCTAGGCA purR 3894388 - 3893573 - | pur operon repressor TERM 5391 3895881 - 3895871 - g 78 -4 -5.39721 | TGATGATATAAAAAA CTAT CTT ATAG AAAATGCTAAAGATG murC 3894588 - 3895964 + | UDP-N-acetylmuramate--alanine ligase CLK_3018 3896029 - 3896337 + | hypothetical protein TERM 5392 3896493 - 3896513 + F 100 -11.3 -6.18768 | opp_overlap 3896493 3896496 TGTCACCCCGACCAA GAACTACTT TAA AAGTAGTTC TTTTTTTTATATTTT TERM 5393 3896513 - 3896493 - f 90 -11.3 -3.15544 | opp_overlap 3896493, overlap 3896496 TGTCACCCCGACCAA GAACTACTT TAA AAGTAGTTC TTTTTTTTATATTTT TERM 5394 3896510 - 3896496 - f 70 -7.2 -3.72324 | opp_overlap 3896493, overlap 3896493 CACCCCGACCAAGAA CTACTT TAA AAGTAG TTCTTTTTTTTATAT CLK_3020 3896584 - 3897933 + | [Fe] hydrogenase TERM 5395 3898131 - 3898116 - g 72 -4.7 -4.87133 | ATTTTTTAAATAAAA GGAAC ATAAAG GTTCC TCAAGATTTAAAAGA CLK_3021 3898019 - 3898663 + | haloacid dehalogenase, IA family protein TERM 5396 3898726 - 3898680 - f 77 -8.9 -3.41602 | gap 2, overlap 3898693 TTTATCCGATGACAA CCCGCTCTAATAATCCCATCTTC TTT AAAG-TGGGAGTAA-AGAGCGGG TACGTCCCTGGATAA TERM 5397 3898793 - 3898742 - f 75 -8.8 -3.28924 | opp_overlap 3898742 3898743 3898746, overlap 3898743 3898745 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTAAATCCAAGAACTCT GTTTATAACATTAAT TERM 5398 3898743 - 3898792 + F 72 -7.9 -3.55191 | opp_overlap 3898742 3898743 3898745, overlap 3898742 3898746 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTAAATCCAAGAACTC TGTTTATAACATTAA TERM 5399 3898792 - 3898743 - f 86 -12.3 -2.57211 | opp_overlap 3898743 3898742 3898746, overlap 3898742 3898745 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTAAATCCAAGAACTC TGTTTATAACATTAA TERM 5400 3898790 - 3898745 - f 73 -9.1 -2.82623 | opp_overlap 3898743 3898742 3898746, overlap 3898743 3898742 GTCCCTGGATAACGA TTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTAAATCCAAGAAC TCTGTTTATAACATT CLK_3022 3898937 - 3899335 + | hypothetical protein TERM 5401 3899380 - 3899338 - T 70 -7.9 -3.30797 | opp_overlap 3899340, overlap 3899336 3899339 TCTAAATTTATAAGA TTTCTCCTAGATTTCATCA TATCT TTATGAAATCTAGGAGATT AAATTAATTATACTT TERM 5402 3899379 - 3899339 - T 83 -11.4 -2.57996 | opp_overlap 3899340, overlap 3899338 3899336 CTAAATTTATAAGAT TTCTCCTAGATTTCATCA TATCT TTATGAAATCTAGGAGAT TAAATTAATTATACT TERM 5403 3899340 - 3899378 + T 100 -14.9 -3.25356 | opp_overlap 3899339 3899338 3899336 TAAATTTATAAGATT TCTCCTAGATTTCATCA TATCT TTATGAAATCTAGGAGA TTAAATTAATTATAC CLK_3023 3900121 - 3899402 - | putative 2-phosphosulfolactate phosphatase TERM 5404 3900013 - 3900060 + g 74 -7.4 -3.98256 | overlap 3900012 ACCCATTATTTATTG CTGTAGTAATTACAGATGTA GCCCTTAA TATATCTATAATTATTACAG TCTTTTTAATCAACC CLK_3024 3901098 - 3900166 - | radical SAM family protein TERM 5405 3901120 - 3901149 + r 100 -10.3 -5.75342 | gap 1, opp_overlap 3901120 TTCCTCCAAAAAAAA GTATCTGTGA-ATA TTA TATGTCACAGATAC TTTTTTTTCAAAACA TERM 5406 3901149 - 3901120 - R 100 -10.3 -5.75342 | gap 1, opp_overlap 3901120 TTCCTCCAAAAAAAA GTATCTGTGA-ATA TTA TATGTCACAGATAC TTTTTTTTCAAAACA CLK_3025 3902293 - 3901166 - | putative phage head-tail adaptor TERM 5407 3902360 - 3902377 + H 82 -4.3 -5.77988 | AAAAGAAAATTTAAT TAAAAAT CATT ATTTTTA TTTTTTTATATATAT CLK_3026 3902432 - 3903478 + | hypothetical protein CLK_3027 3903511 - 3904407 + | radical SAM domain-containing protein TERM 5408 3904458 - 3904494 + T 75 -7.5 -3.87815 | opp_overlap 3904458 ATAACATAAATAAAA GCTATGAAATTTAGATA TTA TCTTTATATTTCATAGC TTTCTCAAAATAAAA TERM 5409 3904494 - 3904458 - T 78 -5.3 -5.11389 | opp_overlap 3904458 ATAACATAAATAAAA GCTATGAAATTTAGATA TTA TCTTTATATTTCATAGC TTTCTCAAAATAAAA CLK_3028 3906353 - 3904557 - | methyl-accepting chemotaxis protein TERM 5410 3905958 - 3905981 + g 76 -6.1 -4.64766 | overlap 3905959 AAACATTCCTCTTTT GGAGCTATA ACTGAA TATAGCTTC TTTTTCAGATATAGG TERM 5411 3906463 - 3906492 + r 82 -9.7 -3.35962 | opp_overlap 3906469 3906474, overlap 3906466 3906467 ACAAAGCTTTATCCT TAATTATAAAATA TATT TATTTTATAATTA TAATTTTTATCTAAA TERM 5412 3906466 - 3906489 + r 70 -7 -3.79689 | opp_overlap 3906469 3906474, overlap 3906463 3906467 AAGCTTTATCCTTAA TTATAAAATA TATT TATTTTATAA TTATAATTTTTATCT TERM 5413 3906586 - 3906539 - R 81 -5.3 -5.40072 | gap 1, opp_overlap 3906543, overlap 3906543 CCGTTTTCAAAAAAA TAAACACTATC-AACATTATTA AACTA CAATAATATTTGATAGTGTTTT AATGATTTTTTATTT TERM 5414 3906582 - 3906543 - R 80 -6.1 -5.20328 | gap 1, opp_overlap 3906543, overlap 3906539 TTTCAAAAAAATAAA CACTATC-AACATTATTA AACTA CAATAATATTTGATAGTG TTTTAATGATTTTTT CLK_3029 3907318 - 3906656 - | DNA-binding protein CLK_3030 3907707 - 3907333 - | hypothetical protein CLK_3031 3908243 - 3907725 - | putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type murI 3909162 - 3908389 - | glutamate racemase TERM 5415 3911039 - 3910997 - g 72 -6.5 -4.33819 | opp_overlap 3910997 ATTATGTAGAAGAAA TCAGAAGCTTTTCTCAATT ACATG AAGTAAACAAAGCTTCTGA TTTAGATATTCATAA TERM 5416 3911189 - 3911161 - g 78 -9.1 -3.2613 | overlap 3911162 AATAACGATTATGAA GCTATTTCTAATT TAC AATTAGAAATAGA TAAAAAAATGAAATT TERM 5417 3911188 - 3911162 - g 100 -12.6 -2.54955 | overlap 3911161 ATAACGATTATGAAG CTATTTCTAATT TAC AATTAGAAATAG ATAAAAAAATGAAAT CLK_3033 3909355 - 3911253 + | putative glutamine synthetase TERM 5418 3911254 - 3911289 + T 95 -12.1 -3.52341 | opp_overlap 3911256 3911261, overlap 3911256 3911261 CTTTTAGATATATAG AATAAAAGCACACCT AGTATC AGGTGTGCTTTTATC TTATAATATTAAAAT TERM 5419 3911256 - 3911287 + T 100 -14.7 -3.33348 | opp_overlap 3911256 3911261, overlap 3911254 3911261 TTTAGATATATAGAA TAAAAGCACACCT AGTATC AGGTGTGCTTTTA TCTTATAATATTAAA TERM 5420 3911287 - 3911256 - T 100 -15.4 -3.66896 | opp_overlap 3911256 3911254 3911261, overlap 3911261 TTTAGATATATAGAA TAAAAGCACACCTA GTAT CAGGTGTGCTTTTA TCTTATAATATTAAA TERM 5421 3911282 - 3911261 - T 100 -10.9 -4.88495 | opp_overlap 3911261 3911256 3911254, overlap 3911256 ATATATAGAATAAAA GCACACCTA GTAT CAGGTGTGC TTTTATCTTATAATA TERM 5422 3911261 - 3911282 + T 100 -10.2 -4.75289 | opp_overlap 3911256 3911261, overlap 3911256 3911254 ATATATAGAATAAAA GCACACCT AGTATC AGGTGTGC TTTTATCTTATAATA CLK_3034 3911846 - 3911298 - | hypothetical protein TERM 5423 3912275 - 3912263 - g 71 -6.9 -3.87792 | opp_overlap 3912263 3912264, overlap 3912261 3912258 AAATTAAAAATAACA GGAGG TAA CCCCC TCTTTGGAAAAGTTG murA 3912242 - 3913495 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 5424 3913479 - 3913495 + F 72 -8.1 -3.1996 | GATCTTTAGGGGCTA CTATAGT TAG ACTATAG TTAAGTTACAATTTA TERM 5425 3913939 - 3913929 - g 91 -5.4 -5.93252 | TCTAAAAATAAAAAA GCAA GCA TTGC TACAGATTTAGGTAT CLK_3036 3913521 - 3914306 + | metallo-beta-lactamase family protein CLK_3037 3914323 - 3914904 + | putative lipoprotein CLK_3038 3914919 - 3915422 + | SEC-C domain-containing protein TERM 5426 3915484 - 3915536 + F 70 -5.1 -4.89339 | opp_overlap 3915486, overlap 3915485 3915486 3915492 3915530 ATTTAATAAATATGG AACTAAGAGGTTTACCATTAAATAA AAT TTATTTAGTGCTAGGCCTTTTAGAG TTTTTCTAAATACTT TERM 5427 3915485 - 3915535 + F 75 -8.6 -3.52519 | opp_overlap 3915486, overlap 3915484 3915486 3915492 3915530 TTTAATAAATATGGA ACTAAGAGGTTTACCATTAAATAA AAT TTATTTAGTGCTAGGCCTTTTAGA GTTTTTCTAAATACT TERM 5428 3915486 - 3915534 + F 88 -12.1 -2.70788 | opp_overlap 3915486, overlap 3915485 3915484 3915492 3915530 TTAATAAATATGGAA CTAAGAGGTTTACCATTAAATAA AAT TTATTTAGTGCTAGGCCTTTTAG AGTTTTTCTAAATAC TERM 5429 3915492 - 3915528 + F 78 -7.5 -4.32233 | opp_overlap 3915486, overlap 3915486 3915485 3915484 AATATGGAACTAAGA GGTTTACCATTAAATAA AAT TTATTTAGTGCTAGGCC TTTTAGAGTTTTTCT CLK_3039 3915601 - 3916080 + | hypothetical protein TERM 5430 3916105 - 3916132 + T 100 -12.2 -5.10765 | gap 1, opp_overlap 3916105 ATAAGTTTACAGAAA TAGGGCCTAC-TA TGA TAGGTAGGCCCTA TTTTATTGTTTATTT TERM 5431 3916132 - 3916105 - T 100 -12.2 -4.06892 | gap 1, opp_overlap 3916105 ATAAGTTTACAGAAA TAGGGCCTAC-TA TGA TAGGTAGGCCCTA TTTTATTGTTTATTT CLK_3040 3916792 - 3916220 - | hypothetical protein TERM 5432 3917049 - 3917075 + H 73 -9 -2.84401 | opp_overlap 3917054, overlap 3917048 3917047 3917051 CGTATTTATTGTTTA TATCATAATAAG ATT TTTATTATGATA CTATTATTATTTTTT TERM 5433 3917487 - 3917475 - g 72 -4.1 -5.04222 | overlap 3917476 CAATTAAATGAAAAA CTGCA GCT TGCAA ATATAAAGCTTCAAC CLK_3041 3917103 - 3918137 + | sensor histidine kinase CLK_3042 3918140 - 3918799 + | transcriptional regulatory protein DegU (protease production enhancerprotein) TERM 5434 3918862 - 3918874 + F 70 -4.9 -4.8622 | opp_overlap 3918862 CTATTTATAATACTA GAAAA AGA TTTTC TTTTTAATTAAAAGC CLK_3043 3919140 - 3919526 + | AraC family transcriptional regulator map 3919558 - 3920433 + | methionine aminopeptidase, type I TERM 5435 3920503 - 3920449 - T 77 -6.8 -4.57353 | opp_overlap 3920449 CTTCATTATATAAAA TTTAATGCTGTAATTAAAAATATTAA TAA CTATAATTTTAAATTGCAGCATTAAA TTTAATGTAAATATA TERM 5436 3920449 - 3920503 + T 78 -8.3 -3.85539 | opp_overlap 3920449 CTTCATTATATAAAA TTTAATGCTGTAATTAAAAATATTA ATAAC TATAATTTTAAATTGCAGCATTAAA TTTAATGTAAATATA CLK_3045 3921062 - 3920523 - | nitroreductase family protein TERM 5437 3921262 - 3921222 - R 100 -10.7 -4.57569 | opp_overlap 3921220 3921222 3921252 TTATTCTTTTAAAAA GGGCACCTCAAAATAAA GGCTAAT TTTATTTTAAGACGCCC TCTTAATTTTATTTG TERM 5438 3921252 - 3921268 + r 70 -3.8 -5.15682 | opp_overlap 3921222, overlap 3921222 3921220 AAGGCTAATTTTATT TTAAGA CGCCC TCTTAA TTTTATTTGTATTTT CLK_3046 3922067 - 3921306 - | putative D-proline reductase proprotein PrdA CLK_3047 3922612 - 3922142 - | D-proline reductase proprotein PrdA TERM 5439 3922331 - 3922341 + g 72 -5.4 -4.69214 | TACAAAACTCATGCC TACC ACT GGTA TTTCTTTCTTCCCTA TERM 5440 3922727 - 3922768 + r 95 -10.5 -3.9901 | opp_overlap 3922736, overlap 3922720 3922764 ATAAAGAATTTATCT TTTTAAAAAGCACTAGA CCTAAAAA TCTAGTGCTTTCTAAAA TTATTAATTTTGCTT TERM 5441 3922759 - 3922736 - R 85 -8.2 -4.57569 | opp_overlap 3922727 3922720 TTATCTTTTTAAAAA GCACTAGACC TAAA AATCTAGTGC TTTCTAAAATTATTA prdB-2 3923517 - 3922792 - | D-proline reductase, PrdB subunit CLK_3049 3923735 - 3923544 - | hypothetical protein CLK_3050 3925483 - 3923738 - | glycine/sarcosine/betaine reductase, component B, subunits alpha and beta CLK_3051 3926876 - 3925590 - | respiratory-chain NADH dehydrogenase family protein TERM 5442 3926231 - 3926215 - G 81 -9.5 -3.66874 | GCAATTTTAGCCAAA GTCTCTA CAT TAGAGAC AACAGCATTAGCTTC CLK_3052 3927432 - 3928928 + | hypothetical protein TERM 5443 3928962 - 3928992 + G 90 -7.7 -5.055 | gap 1, overlap 3928964 3928968 AATACCTTTTAGTTC TGTAGATGGTCCTG GAAA CAGGACCG-CTATA TTTTTTCAAGGTTGC TERM 5444 3928964 - 3928990 + G 81 -8.1 -4.15235 | gap 1, overlap 3928962 3928968 TACCTTTTAGTTCTG TAGATGGTCCTG GAAA CAGGACCG-CTA TATTTTTTCAAGGTT TERM 5445 3928968 - 3928987 + G 76 -10 -2.78977 | overlap 3928964 3928962 TTTTAGTTCTGTAGA TGGTCCTG GAAA CAGGACCG CTATATTTTTTCAAG CLK_3053 3928921 - 3929757 + | radical SAM domain-containing protein TERM 5446 3929823 - 3929861 + F 83 -9.2 -3.48924 | overlap 3929827 AAATCAAATTTAGTT CAAATAATTAGAGAGG TTTTTTC CTTCTTTAATTATTTG TTCTCTAAAACATAC TERM 5447 3929935 - 3929947 + F 80 -6.3 -5.14626 | opp_overlap 3929935 TATAGTTTAAATTGA GGTAT TTT ATACC TTTTATTTTGGTACT TERM 5448 3929967 - 3929983 + F 100 -10.9 -5.84432 | ATTTTGGTACTTTAA CTTTCCC TTT GGGAAAG TTTTTTTATCTTATA CLK_3054 3930093 - 3930344 + | hypothetical protein CLK_3055 3930347 - 3931393 + | radical SAM domain-containing protein TERM 5449 3931600 - 3931610 + G 70 -4 -4.96388 | GAAATCTATATACGG CAAT AGA ATTG TTTTATTTGCTCCTT CLK_3056 3931394 - 3932770 + | ThiH/BioB family protein TERM 5450 3933770 - 3933754 - g 71 -3.1 -5.252 | CATGTGGATAAAAAA TTAAACT ATG AATTTAA AATGGGTGGAGATTT CLK_3057 3932779 - 3933972 + | GTP-binding protein TERM 5451 3934062 - 3934099 + F 100 -13.1 -4.93696 | opp_overlap 3934062 ATCTAATATAAAAAA TACACTTAATAAACAAA CTCA TATGTTTATTAAGTGTA TTTTTCATATTTGCG TERM 5452 3934099 - 3934062 - f 100 -13.1 -5.48063 | opp_overlap 3934062 ATCTAATATAAAAAA TACACTTAATAAACAAA CTCA TATGTTTATTAAGTGTA TTTTTCATATTTGCG TERM 5453 3935684 - 3935661 - g 73 -9 -3.18023 | overlap 3935659 GTATTACCATGAATA TACTTGCTAT GGCT ACAGCAAGTA AGAAGTTTAATTCTA CLK_3058 3934340 - 3935713 + | sodium:solute symporter family protein TERM 5454 3935887 - 3935858 - f 86 -2.3 -6.47325 | gap 1, overlap 3935886 AAAAAAGAAAAAAAA TACTCCACCTTCTG TAC CAGAAG-TAAAATA ATTTTTAGAGTATAA TERM 5455 3935925 - 3935891 - f 72 -8.8 -2.5111 | opp_overlap 3935895, overlap 3935890 3935886 3935900 AGAAGTAAAATAATT TTTAGAGTATAAAGTT TAA AACTTTATACTCTTTA TTTTATTATATATTA TERM 5456 3935895 - 3935921 + F 100 -14 -4.94168 | opp_overlap 3935891 3935890 3935886 3935900 GTAAAATAATTTTTA GAGTATAAAGTT TAA AACTTTATACTC TTTATTTTATTATAT TERM 5457 3936710 - 3936728 + G 73 -3.8 -5.32565 | overlap 3936712 ATGCTGGTAAACTAA GCTATTCC AAA GGAGTACC TTTTTTAATTAATTC CLK_3059 3936013 - 3937257 + | glycosyl transferase, group 1 family protein TERM 5458 3937451 - 3937499 + T 95 -11.7 -3.59981 | gap 1, opp_overlap 3937455 3937460, overlap 3937460 AAAAAAATATCTTAA TAAATAAAA-GAGATAATATTA AAAATC TAATATTATCTCTTTTTATTTA TATTTAATTATGATA TERM 5459 3937494 - 3937455 - T 95 -10.4 -4.21351 | opp_overlap 3937451 3937460, overlap 3937460 AAATATCTTAATAAA TAAAAGAGATAATATTAA AAAT CTAATATTATCTCTTTTT ATTTATATTTAATTA TERM 5460 3937489 - 3937460 - T 100 -10.3 -5.09762 | opp_overlap 3937460 3937451, overlap 3937455 TCTTAATAAATAAAA GAGATAATATTAA AAAT CTAATATTATCTC TTTTTATTTATATTT TERM 5461 3937460 - 3937489 + T 100 -9.6 -5.48623 | opp_overlap 3937455 3937460, overlap 3937451 TCTTAATAAATAAAA GAGATAATATTA AAAATC TAATATTATCTC TTTTTATTTATATTT CLK_3060 3938194 - 3937517 - | putative phosphoesterase TERM 5462 3938230 - 3938240 + H 79 -4 -5.67967 | opp_overlap 3938219 3938230, overlap 3938225 TTTATCACCATTATA TGAT AAT ATCA TTTTTTTATAATCAT CLK_3061 3938490 - 3938975 + | hypothetical protein TERM 5463 3939017 - 3938986 - f 95 -10.4 -3.90038 | opp_overlap 3938986, overlap 3938980 ATTAAAGAATTTAAA TGGATAACAAGT AAAAGACA ACTTGTTATCCA TTTTTTTATATAATA TERM 5464 3938986 - 3939017 + F 100 -10.4 -5.74122 | opp_overlap 3938986 3938980 ATTAAAGAATTTAAA TGGATAACAAGT AAAAGACA ACTTGTTATCCA TTTTTTTATATAATA CLK_3062 3939082 - 3939513 + | hypothetical protein TERM 5465 3939552 - 3939538 - f 90 -4.4 -6.26417 | opp_overlap 3939538 CATTATAAAAAAAAA TTATAA TTC TTATAA CTTATATAAATAACA CLK_3063 3939694 - 3940599 + | LysR family transcriptional regulator TERM 5466 3941212 - 3941202 - g 72 -8.2 -3.33492 | opp_overlap 3941190 TGATGGACTTTATAA GGGC ATT GCCC CTAAAAGCCATTTAT CLK_3064 3940687 - 3941883 + | subtilase family protein TERM 5467 3941886 - 3941920 + T 76 -9.7 -2.80472 | gap 1, opp_overlap 3941886 3941898, overlap 3941885 3941886 3941888 3941898 ACTTTTACCTTAAAA TATATAAAAAAAGAGC ATAT GCTCTTTTTTT-TATA CATTTTTTAATGCAA TERM 5468 3941920 - 3941886 - T 86 -9.7 -4.13945 | gap 1, opp_overlap 3941885 3941886 3941886 3941888 3941898, overlap 3941898 ACTTTTACCTTAAAA TATATAAAAAAAGAGC ATAT GCTCTTTTTTT-TATA CATTTTTTAATGCAA TERM 5469 3941886 - 3941922 + T 80 -6.2 -5.14563 | gap 1, opp_overlap 3941886 3941898, overlap 3941885 3941886 3941888 3941898 ACTTTTACCTTAAAA TATATAAAAA-AAGAGC ATAT GCTCTTTTTTTTATACA TTTTTTAATGCAAAC TERM 5470 3941909 - 3941898 - T 90 -5.8 -5.82281 | opp_overlap 3941888 3941886 3941885 3941886 3941898, overlap 3941886 AAATATATAAAAAAA GAGC ATAT GCTC TTTTTTTTATACATT TERM 5471 3941898 - 3941909 + T 90 -5.8 -5.97575 | opp_overlap 3941898 3941886, overlap 3941888 3941886 3941885 3941886 AAATATATAAAAAAA GAGC ATAT GCTC TTTTTTTTATACATT CLK_3065 3942797 - 3941916 - | LysR family transcriptional regulator TERM 5472 3941970 - 3941996 + g 71 -2.4 -5.48028 | opp_overlap 3941962, overlap 3941962 3941965 TAATGTAGATAAAAA CTTATCTTTATG ATA TATAAGTATAAG TTTTCTTTTTATTTC CLK_3066 3943773 - 3942826 - | D-isomer specific 2-hydroxyacid dehydrogenase TERM 5473 3943973 - 3944008 + r 72 -7.7 -3.60597 | opp_overlap 3943975, overlap 3943971 3943974 CAATAGAATTTTTAA AAGGAGTATTTAGTG CTTATT CACTAAATACTCCCA TGTTTCTAAATTTAT TERM 5474 3943974 - 3944007 + r 83 -11.2 -2.75274 | opp_overlap 3943975, overlap 3943973 3943971 AATAGAATTTTTAAA AGGAGTATTTAGTG CTTATT CACTAAATACTCCC ATGTTTCTAAATTTA TERM 5475 3944006 - 3943975 - R 100 -14.7 -4.16251 | opp_overlap 3943974 3943973 3943971 ATAGAATTTTTAAAA GGAGTATTTAGTG CTTATT CACTAAATACTCC CATGTTTCTAAATTT accA 3944828 - 3943989 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 5476 3944033 - 3944068 + g 79 -7.2 -4.42594 | gap 1, opp_overlap 3944042 3944045, overlap 3944029 3944037 3944042 ATTTATTATATCTTT TATCTAAAAGTATATCC AAA GGATATTCTTTTA-ATA TTTCTATTTCATTTA TERM 5477 3944037 - 3944065 + g 78 -10.5 -2.85831 | opp_overlap 3944042 3944045, overlap 3944029 3944033 3944042 ATTATATCTTTTATC TAAAAGTATATCC AAA GGATATTCTTTTA ATATTTCTATTTCAT TERM 5478 3944042 - 3944060 + g 73 -6 -4.5394 | opp_overlap 3944042 3944045, overlap 3944037 3944033 ATCTTTTATCTAAAA GTATATCC AAA GGATATTC TTTTAATATTTCTAT accD 3945744 - 3944875 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit accC 3947110 - 3945764 - | acetyl-CoA carboxylase, biotin carboxylase fabZ 3947576 - 3947142 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ accB 3948072 - 3947596 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 5479 3947760 - 3947772 + g 86 -6.3 -5.47431 | TAACCTTATCTCCTA CCTTA GCA TAAGG TTTTTTATCTATTCC fabF 3949314 - 3948076 - | 3-oxoacyl-(acyl-carrier-protein) synthase II fabG 3950080 - 3949334 - | 3-oxoacyl-[acyl-carrier-protein] reductase fabD 3951042 - 3950098 - | malonyl CoA-acyl carrier protein transacylase TERM 5480 3950818 - 3950860 + g 70 -4.2 -4.95843 | opp_overlap 3950828 3950832, overlap 3950819 3950825 3950828 GTACTTTTCCAATGC TTTCATAGCAGCAATACTAA GGG TTAGTATTGCTGGTTGGGTA TTTTCTGTTTTATCT TERM 5481 3950819 - 3950858 + g 75 -7.4 -4.07119 | gap 1, opp_overlap 3950828 3950832, overlap 3950818 3950825 3950828 TACTTTTCCAATGCT TTCATAGCAGCAATACTAA GGG TTAGTATTGCTGGT-TGGG TATTTTCTGTTTTAT TERM 5482 3950825 - 3950853 + g 95 -11.9 -3.31575 | opp_overlap 3950828 3950832, overlap 3950819 3950818 3950828 TCCAATGCTTTCATA GCAGCAATACTAA GGG TTAGTATTGCTGG TTGGGTATTTTCTGT TERM 5483 3950828 - 3950850 + g 100 -12.2 -2.81509 | opp_overlap 3950828 3950832, overlap 3950825 3950819 3950818 AATGCTTTCATAGCA GCAATACTAA GGG TTAGTATTGC TGGTTGGGTATTTTC TERM 5484 3950850 - 3950828 - G 100 -12.2 -2.62515 | opp_overlap 3950828 3950825 3950819 3950818, overlap 3950832 AATGCTTTCATAGCA GCAATACTAA GGG TTAGTATTGC TGGTTGGGTATTTTC CLK_3075 3951989 - 3951063 - | 2-nitropropane dioxygenase family oxidoreductase TERM 5485 3951244 - 3951254 + g 74 -5.4 -5.00846 | opp_overlap 3951234 3951244, overlap 3951236 TCAAATTCTTCTAAA GAAG CTC CTTC TTTTTCTAGTATTTG TERM 5486 3952080 - 3952098 + r 100 -8.8 -5.83226 | AAAATTTAATTTTGT GGACCATC TTA GATGGCCC TTTTTTTATTGACTT acpP 3952339 - 3952115 - | acyl carrier protein fabH 3953360 - 3952380 - | 3-oxoacyl-(acyl-carrier-protein) synthase III CLK_3078 3953829 - 3953353 - | MarR family transcriptional regulator CLK_3079 3954903 - 3953845 - | 2-nitropropane dioxygenase family oxidoreductase TERM 5487 3955004 - 3954951 - R 79 -8.7 -3.7108 | gap 1, opp_overlap 3954935 3954954 3954967, overlap 3954935 3954952 3954967 ATTTTGATAGTCAAA GTATATAATAAAAAAATATCACTGTC AAT GATAGTGATATTTTTTTATTAT-CAT TTTATATAAATTAAT TERM 5488 3955003 - 3954952 - R 89 -12.2 -2.82327 | gap 1, opp_overlap 3954935 3954954 3954967, overlap 3954935 3954951 3954967 TTTTGATAGTCAAAG TATATAATAAAAAAATATCACTGTC AAT GATAGTGATATTTTTTTATTAT-CA TTTTATATAAATTAA TERM 5489 3954954 - 3955003 + r 100 -15.7 -4.57474 | gap 1, opp_overlap 3954952 3954951 3954967, overlap 3954967 TTGATAGTCAAAGTA T-ATAATAAAAAAATATCACTGTC AAT GATAGTGATATTTTTTTATTATCA TTTTATATAAATTAA TERM 5490 3954967 - 3954989 + r 100 -10 -5.89921 | opp_overlap 3954952 3954951 3954967, overlap 3954954 TATATAATAAAAAAA TATCACTGTC AAT GATAGTGATA TTTTTTTATTATCAT TERM 5491 3954989 - 3954967 - R 100 -7.8 -5.9218 | opp_overlap 3954967 3954954, overlap 3954952 3954951 TATATAATAAAAAAA TATCACTGTC AAT GATAGTGATA TTTTTTTATTATCAT CLK_3080 3955936 - 3955001 - | putative peptidase TERM 5492 3955327 - 3955343 + g 74 -7.3 -3.89881 | opp_overlap 3955326, overlap 3955319 ACCTTTTTCCAAATT TGGATGT TAT GCATCCA TTTGTGGGCATTGCT TERM 5493 3955626 - 3955651 + g 90 -7.1 -5.626 | opp_overlap 3955650, overlap 3955628 3955650 TTGAAAGCTGTTACT TTTATATTAGA ATTT TCTAATATAGA TTTTTTTATAAAATC TERM 5494 3956755 - 3956739 - g 76 -3.7 -5.4593 | overlap 3956740 TCAAAATAAGAAAAA TCCTAAA TTA TTTAGGG GCAAAAGATGGCGAA TERM 5495 3956754 - 3956740 - g 71 -7.2 -3.85118 | overlap 3956739 CAAAATAAGAAAAAT CCTAAA TTA TTTAGG GGCAAAAGATGGCGA CLK_3081 3956117 - 3957103 + | putative DNA replication protein DnaD TERM 5496 3957823 - 3957803 - g 72 -7.7 -3.64357 | overlap 3957801 3957804 CGATAATGATAAACA CTTAGAAGA TAT TCTTCTAAA CTGCGATTTACTTAT TERM 5497 3957822 - 3957804 - g 71 -9 -2.77891 | overlap 3957803 3957801 GATAATGATAAACAC TTAGAAGA TAT TCTTCTAA ACTGCGATTTACTTA CLK_3082 3957096 - 3958073 + | putative DNA replication protein DnaC TERM 5498 3958111 - 3958058 - T 100 -12.1 -5.57054 | opp_overlap 3958071 3958075, overlap 3958071 AAGAATTCAAAAAAA TATACAAAATAAATAAAGTAGCTAG ATTT CTAGCTACTTTATTCTATATGTATA ATAAATAATAAAAAC TERM 5499 3958071 - 3958098 + T 100 -14.4 -3.67297 | opp_overlap 3958058 3958071, overlap 3958075 AATATACAAAATAAA TAAAGTAGCTAG ATTT CTAGCTACTTTA TTCTATATGTATAAT TERM 5500 3958098 - 3958071 - T 100 -14.4 -4.87008 | opp_overlap 3958071 3958075, overlap 3958058 AATATACAAAATAAA TAAAGTAGCTAG ATTT CTAGCTACTTTA TTCTATATGTATAAT TERM 5501 3958075 - 3958094 + T 100 -10.8 -4.4458 | opp_overlap 3958071 3958058, overlap 3958071 TACAAAATAAATAAA GTAGCTAG ATTT CTAGCTAC TTTATTCTATATGTA CLK_3095 3960126 - 3959317 - | hypothetical protein CLK_3096 3960513 - 3960139 - | CoA-binding protein TERM 5502 3961430 - 3961444 + G 70 -5 -4.58424 | opp_overlap 3961430 TTCTACAATTAAGTA GTTTAG TCT CTAGAC TTTTATATAATAATA CLK_3097 3960694 - 3961923 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 5503 3961985 - 3961933 - T 100 -8.3 -5.36181 | gap 2, opp_overlap 3961933 AAATAAAAAAATAAA TTGCTAGAAA-TGCTT-TTAATTAA TTTTT TTAATTAGCAAGCACTTTCTAGCAA TTTATAAATATATCA TERM 5504 3961933 - 3961985 + T 95 -10.5 -3.96531 | gap 2, opp_overlap 3961933 AAATAAAAAAATAAA TTGCTAGAAA-TGCTT-TTAATTAA TTTTT TTAATTAGCAAGCACTTTCTAGCAA TTTATAAATATATCA CLK_3098 3962773 - 3962024 - | acyl-ACP thioesterase family protein TERM 5505 3962846 - 3962865 + r 91 -5 -6.11229 | opp_overlap 3962846 AATTTAATAAAAAAA CTCCATAT TAAA ACATGGAG TTTTTTTCTTTTACT TERM 5506 3962865 - 3962846 - R 95 -7.2 -5.83226 | opp_overlap 3962846 AATTTAATAAAAAAA CTCCATAT TAAA ACATGGAG TTTTTTTCTTTTACT CLK_3099 3963061 - 3962876 - | hypothetical protein purA 3964472 - 3963186 - | adenylosuccinate synthetase TERM 5507 3964692 - 3964666 - R 100 -12.5 -5.43553 | opp_overlap 3964666 ATTTAAAAAATAAAA TATTGCAGCTA AATTA TAGCTGCAATA TTATTATTCCTTTAT TERM 5508 3964666 - 3964692 + r 100 -12.5 -4.07604 | opp_overlap 3964666 ATTTAAAAAATAAAA TATTGCAGCTA AATTA TAGCTGCAATA TTATTATTCCTTTAT CLK_3101 3966089 - 3964704 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 5509 3965668 - 3965688 + g 91 -11.3 -3.08211 | CCTAAATGCCTTACC TTTGCATCT AAA AGATGCAAA TCATTTTGGAGAGCT CLK_3102 3966474 - 3966259 - | hypothetical protein TERM 5510 3966577 - 3966541 - R 95 -10.3 -4.23054 | opp_overlap 3966540 3966541 ATATATTATCTAAAA TAGCCTACCACAGACTT TGA AAACTTGTAGTAGGCTA ATTGTTATTTCTATA CLK_3103 3968400 - 3966679 - | phosphoglucomutase/phosphomannomutase family protein TERM 5511 3968636 - 3968604 - R 73 -4.3 -5.16472 | opp_overlap 3968597 3968609 3968611, overlap 3968609 AAAAATGCTAAAAAA TAAAAGCCCTATA AAATAAA TATAGGACTTTTT ATGTTTTATTCTTGA TERM 5512 3968631 - 3968609 - R 76 -4.2 -5.42198 | opp_overlap 3968597 3968609 3968611, overlap 3968604 TGCTAAAAAATAAAA GCCCTATA AAATAAA TATAGGAC TTTTTATGTTTTATT dnaB 3969979 - 3968642 - | replicative DNA helicase TERM 5513 3969872 - 3969905 + g 77 -9.8 -2.98015 | opp_overlap 3969877, overlap 3969877 AAAATCTTCACTTTT TAAAACTTCCACAG ACTCTG CTATGGAAGTTTTA TCTATAATCATTGCC TERM 5514 3969900 - 3969877 - G 75 -7.5 -4.09685 | opp_overlap 3969872 3969877 CTTCACTTTTTAAAA CTTCCACAG ACTCTG CTATGGAAG TTTTATCTATAATCA TERM 5515 3969877 - 3969900 + g 70 -5.3 -4.62984 | opp_overlap 3969877, overlap 3969872 CTTCACTTTTTAAAA CTTCCACAG ACTCTG CTATGGAAG TTTTATCTATAATCA CLK_3105 3971929 - 3970010 - | ATP-dependent protease TERM 5516 3970104 - 3970115 + g 75 -4.4 -5.30686 | TTTATATTGTCTTTA GGTA TTAT TACC TTTTTTATGCCTCTT rplI 3972383 - 3971940 - | ribosomal protein L9 CLK_3107 3974368 - 3972383 - | DHH family protein TERM 5517 3973732 - 3973744 + g 72 -2.7 -5.4492 | GTCTTTCTATTTCTG CTATT ATT AATGG TTTTTTATCTATATC TERM 5518 3974157 - 3974179 + g 82 -4.3 -5.54264 | overlap 3974155 AATGCGCTATCCATT TTTGTAGAA AAATC TTCTATAAA TTTTTTTAGCTCTTT CLK_3108 3975373 - 3974369 - | hypothetical protein CLK_3109 3975702 - 3975385 - | hypothetical protein TERM 5519 3975810 - 3975831 + r 89 -8.8 -4.59081 | opp_overlap 3975810 GATATACAAAAAAAA CTGACTAC AAATTA GTAGTCAG TTTTATGTAAATTTA TERM 5520 3975831 - 3975810 - R 100 -8.8 -6.06529 | opp_overlap 3975810 GATATACAAAAAAAA CTGACTAC AAATTA GTAGTCAG TTTTATGTAAATTTA rpsR 3976093 - 3975851 - | ribosomal protein S18 TERM 5521 3975943 - 3975957 + g 77 -7.2 -4.33907 | opp_overlap 3975943 CACAGTTTCCTGAAA TTCTTC TTG GAAGAA TTTTGCCTCTTTCTG ssb 3976558 - 3976112 - | single-strand binding protein rpsF 3976858 - 3976574 - | ribosomal protein S6 TERM 5522 3976906 - 3976886 - R 80 -9.7 -3.18264 | opp_overlap 3976883 CTCCCCACGGACTAA CGGCTGTAC TTT GTACAGCAG GGATTTATCGTACAT CLK_3113 3978111 - 3976963 - | putative R-2-hydroxyglutaryl-CoA dehydratase subunit TERM 5523 3978360 - 3978337 - R 93 -6.9 -5.88565 | TTTATAACAAAAAAA CTATTGATA TTACTC TATCAATAG CTAATAAAAAAACTA CLK_3114 3978582 - 3978385 - | hypothetical protein CLK_3115 3979467 - 3978598 - | mechanosensitive ion channel family protein CLK_3116 3979719 - 3979474 - | hypothetical protein TERM 5524 3980346 - 3980321 - g 75 -5.6 -4.79075 | AAAAATGCAATAAAA GATAACACAA AATTAG TTGTATTATC TCATGCATCAAACAT CLK_3117 3979910 - 3981064 + | cysteine desulfurase family protein ytvI 3981078 - 3982133 + | sporulation integral membrane protein YtvI TERM 5525 3982151 - 3982183 + F 86 -5.8 -5.67063 | opp_overlap 3982146 3982151 GCAAAATGTATAAAA CCTCTT-TTAGTGGAT ATA ATCC-CTAACAGGAGG TTTTTTTATGATAAG CLK_3119 3982191 - 3982772 + | hypothetical protein CLK_3120 3983019 - 3982774 - | hypothetical protein TERM 5526 3983023 - 3983069 + r 100 -18.4 -3.72152 | opp_overlap 3983028, overlap 3983028 AAAAATATTCATTAT AAAAACCTCCCTTTATGAAATA TTA TTTTTCATAAAGGGAGGTTTTA TTCTAATTTTCATTA TERM 5527 3983028 - 3983064 + r 100 -18.3 -4.88258 | opp_overlap 3983028, overlap 3983023 TATTCATTATAAAAA CCTCCCTTTATGAAATA TTA TTTTTCATAAAGGGAGG TTTTATTCTAATTTT TERM 5528 3983064 - 3983028 - R 100 -18.3 -4.9218 | opp_overlap 3983028 3983023 TATTCATTATAAAAA CCTCCCTTTATGAAATA TTA TTTTTCATAAAGGGAGG TTTTATTCTAATTTT CLK_3121 3983581 - 3983072 - | hypothetical protein TERM 5529 3983601 - 3983616 + r 74 -6.2 -4.68539 | TATCTCCTCCGTCGA TGTTTC ACGT GAAACA TTTTATAATTTTAGT CLK_3122 3984467 - 3983619 - | stage 0 sporulation protein J soj 3985247 - 3984483 - | sporulation initiation inhibitor protein soj TERM 5530 3985308 - 3985263 - R 90 -11.7 -3.09516 | opp_overlap 3985262 3985261, overlap 3985267 3985290 TTCCTCACCACCTAA TTAATTATTCTACTTTTAATT ATAT AATTTAAAGTAAAATAATTAA AGTCTTTTACATATA TERM 5531 3985304 - 3985267 - R 74 -8.1 -3.38316 | opp_overlap 3985262 3985261, overlap 3985263 3985290 TCACCACCTAATTAA TTATTCTACTTTTAATT ATAT AATTTAAAGTAAAATAA TTAAAGTCTTTTACA TERM 5532 3985344 - 3985373 + r 74 -5.1 -5.17054 | opp_overlap 3985347, overlap 3985346 3985347 TTAAAATTTAATAAA AAATAGATGTTTC ACGT GAAACATCTACTA TTTTTTAGGTATTGT TERM 5533 3985346 - 3985371 + r 78 -7.7 -4.20118 | opp_overlap 3985347, overlap 3985344 3985347 AAAATTTAATAAAAA ATAGATGTTTC ACGT GAAACATCTAC TATTTTTTAGGTATT TERM 5534 3985370 - 3985347 - R 100 -11.2 -5.52096 | opp_overlap 3985346 3985344 3985347 AAATTTAATAAAAAA TAGATGTTTC ACGT GAAACATCTA CTATTTTTTAGGTAT TERM 5535 3985347 - 3985370 + r 87 -11.2 -3.10444 | opp_overlap 3985347, overlap 3985346 3985344 AAATTTAATAAAAAA TAGATGTTTC ACGT GAAACATCTA CTATTTTTTAGGTAT CLK_3124 3986150 - 3985371 - | parB family protein TERM 5536 3986129 - 3986139 + g 72 -2.6 -5.48825 | opp_overlap 3986129 TTTTATCAGTGGAAA TATA ATT TATA TTTTTTTGCATACTA gidB 3986969 - 3986250 - | methyltransferase GidB TERM 5537 3986555 - 3986576 + g 73 -9.5 -2.59527 | overlap 3986554 3986552 3986557 CATCATATTTTTGCC TATGCTCAG CTTC CTGAGCGTA ATCTTCTGCTCTTCC TERM 5538 3986758 - 3986777 + g 76 -7.8 -3.89368 | opp_overlap 3986753 3986752 TCAATTAAACTTTTA GCTTCTCC TATA GGTGAAGC TTTAAATATTTTTAT TERM 5539 3986842 - 3986852 + g 82 -4 -5.5074 | TCTTCAACAATAGCT GTTA AAT TAAC TTTTTTATTCCATTC gidA 3988870 - 3986993 - | glucose-inhibited division protein A TERM 5540 3987078 - 3987091 + g 74 -5.3 -4.94487 | ATTCTAGAAGCCTGG CCTAT ATTT ATAGG TTTTATCTTTTCTAA TERM 5541 3988261 - 3988272 + g 70 -5.8 -4.30441 | TTTTATTTATTCTTG CAGG GGTT CCTG TTTTAAATCTTCTAA trmE 3990264 - 3988879 - | tRNA modification GTPase TrmE TERM 5542 3990321 - 3990304 - R 100 -9.9 -5.23765 | CAAATAATATAAAAA GAAAGCC TTTA GGCTTTC CTCAAATTTATTACA jag 3990938 - 3990312 - | jag protein TERM 5543 3990446 - 3990457 + g 70 -5.8 -4.31904 | opp_overlap 3990446 TAGGTTCTAATTTAA CTGG TCTT CCAG TTTCTCTTACTTTAT oxaA 3991609 - 3990956 - | membrane protein OxaA TERM 5544 3991523 - 3991507 - G 71 -5.9 -4.45664 | TTAATGTAACTAAAA TTATGGC TAT ACCATAA GAAAAGTTAGGATTA CLK_3130 3991844 - 3991635 - | hypothetical protein TERM 5545 3991701 - 3991724 + g 72 -4.6 -5.00642 | gap 1, opp_overlap 3991704, overlap 3991704 TCTCTTTATTGATAT TAAGGTGC-CT TTT AGTGCACCATA TTTTTCTATAGCTTC rnpA 3992176 - 3991841 - | ribonuclease P protein component TERM 5546 3992229 - 3992214 - R 88 -8.2 -4.84359 | opp_overlap 3992213 3992214 GCATCTGCAGAAAAA GGCCAC TAAT GCGGCC CTTATGCTGTCAATC rpmH 3992365 - 3992231 - | ribosomal protein L34